# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- CRISPR_Cas2 PF09827.9 gi|530547473|ref|YP_008428001.1| - 2.5e-23 82.1 0.6 2.7e-23 81.9 0.6 1.0 1 0 0 1 1 1 1 CRISPR associated protein Cas2 SHOCT PF09851.9 gi|530547473|ref|YP_008428001.1| - 0.036 13.8 0.4 0.072 12.9 0.4 1.5 1 0 0 1 1 1 0 Short C-terminal domain Cas_Cas6 PF01881.16 gi|530547474|ref|YP_008428002.1| - 1e-21 78.0 0.1 1.8e-21 77.2 0.1 1.4 1 0 0 1 1 1 1 CRISPR associated protein Cas6 HTH_38 PF13936.6 gi|530547475|ref|YP_008428003.1| - 1.7e-06 27.6 0.1 3.8e-06 26.5 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 gi|530547475|ref|YP_008428003.1| - 0.00015 21.4 0.0 0.00037 20.2 0.0 1.7 1 0 0 1 1 1 1 Homeodomain-like domain Fe_dep_repress PF01325.19 gi|530547475|ref|YP_008428003.1| - 0.00019 21.6 0.1 0.00034 20.8 0.1 1.3 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain GerE PF00196.19 gi|530547475|ref|YP_008428003.1| - 0.0008 18.9 0.0 0.0016 17.9 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family TrmB PF01978.19 gi|530547475|ref|YP_008428003.1| - 0.0026 17.6 0.3 0.0057 16.5 0.1 1.6 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.6 gi|530547475|ref|YP_008428003.1| - 0.0027 18.2 0.1 0.014 15.8 0.0 2.0 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_5 PF01022.20 gi|530547475|ref|YP_008428003.1| - 0.004 17.0 0.0 0.011 15.6 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|530547475|ref|YP_008428003.1| - 0.005 16.7 0.0 0.013 15.3 0.0 1.8 1 0 0 1 1 1 1 MarR family HTH_50 PF18024.1 gi|530547475|ref|YP_008428003.1| - 0.0096 15.5 0.0 0.018 14.6 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|530547475|ref|YP_008428003.1| - 0.01 15.5 0.1 0.14 11.8 0.0 2.3 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_11 PF08279.12 gi|530547475|ref|YP_008428003.1| - 0.017 15.1 0.0 0.062 13.3 0.0 2.0 2 0 0 2 2 2 0 HTH domain Trp_repressor PF01371.19 gi|530547475|ref|YP_008428003.1| - 0.018 15.2 0.0 0.033 14.3 0.0 1.4 1 0 0 1 1 1 0 Trp repressor protein HTH_28 PF13518.6 gi|530547475|ref|YP_008428003.1| - 0.034 14.3 0.0 0.09 12.9 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_DeoR PF08220.12 gi|530547475|ref|YP_008428003.1| - 0.036 13.8 0.0 0.07 12.9 0.0 1.4 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_10 PF04967.12 gi|530547475|ref|YP_008428003.1| - 0.071 12.9 0.0 0.14 12.0 0.0 1.5 1 0 0 1 1 1 0 HTH DNA binding domain HTH_40 PF14493.6 gi|530547475|ref|YP_008428003.1| - 0.1 13.1 0.0 0.27 11.7 0.0 1.7 2 0 0 2 2 1 0 Helix-turn-helix domain MarR PF01047.22 gi|530547475|ref|YP_008428003.1| - 0.13 12.2 0.0 0.25 11.3 0.0 1.5 1 0 0 1 1 1 0 MarR family HTH_Tnp_ISL3 PF13542.6 gi|530547475|ref|YP_008428003.1| - 0.14 11.6 0.0 0.34 10.4 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HD PF01966.22 gi|530547476|ref|YP_008428004.1| - 1.1e-14 54.7 0.1 1.8e-14 54.0 0.1 1.4 1 0 0 1 1 1 1 HD domain HD_6 PF18019.1 gi|530547476|ref|YP_008428004.1| - 0.0048 17.0 0.0 0.0089 16.2 0.0 1.5 1 1 0 1 1 1 1 HD domain COG6 PF06419.11 gi|530547476|ref|YP_008428004.1| - 0.07 11.3 0.0 0.11 10.6 0.0 1.2 1 0 0 1 1 1 0 Conserved oligomeric complex COG6 DEAD PF00270.29 gi|530547478|ref|YP_008428006.1| - 3.5e-10 39.9 0.1 1.1e-09 38.3 0.1 1.8 1 1 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|530547478|ref|YP_008428006.1| - 9.2e-10 38.9 0.1 4.6e-09 36.6 0.1 2.1 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|530547478|ref|YP_008428006.1| - 5.7e-09 36.2 0.0 1.4e-08 34.9 0.0 1.7 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_22 PF13401.6 gi|530547478|ref|YP_008428006.1| - 0.0014 18.9 0.1 0.082 13.2 0.1 3.1 2 1 0 2 2 2 1 AAA domain PhoH PF02562.16 gi|530547478|ref|YP_008428006.1| - 0.0055 16.2 0.0 0.014 14.8 0.0 1.6 2 0 0 2 2 2 1 PhoH-like protein AAA PF00004.29 gi|530547478|ref|YP_008428006.1| - 0.041 14.3 0.8 0.75 10.2 0.4 2.8 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Nif11 PF07862.11 gi|530547478|ref|YP_008428006.1| - 0.052 13.9 0.2 7.5 6.9 0.0 3.6 4 0 0 4 4 4 0 Nif11 domain IstB_IS21 PF01695.17 gi|530547478|ref|YP_008428006.1| - 0.083 12.6 0.0 3.7 7.3 0.0 2.5 2 0 0 2 2 2 0 IstB-like ATP binding protein XylR_N PF06505.11 gi|530547478|ref|YP_008428006.1| - 0.096 12.4 0.0 0.21 11.4 0.0 1.5 1 0 0 1 1 1 0 Activator of aromatic catabolism Cas_Csx9 PF09658.10 gi|530547479|ref|YP_008428007.1| - 1.1e-243 808.2 1.2 1.2e-243 808.0 1.2 1.0 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Csx9) DevR PF01905.16 gi|530547482|ref|YP_008428010.1| - 6.7e-83 277.9 0.0 7.8e-83 277.6 0.0 1.0 1 0 0 1 1 1 1 CRISPR-associated negative auto-regulator DevR/Csa2 Cas_Csa5 PF09702.10 gi|530547483|ref|YP_008428011.1| - 4.7e-29 100.8 0.0 2.2e-28 98.6 0.0 1.8 1 1 0 1 1 1 1 CRISPR-associated protein (Cas_Csa5) Cas_Cas1 PF01867.16 gi|530547484|ref|YP_008428012.1| - 1.9e-84 283.1 0.7 2.3e-84 282.9 0.7 1.1 1 0 0 1 1 1 1 CRISPR associated protein Cas1 Cas_Cas4 PF01930.17 gi|530547485|ref|YP_008428013.1| - 8.2e-54 182.1 0.6 1e-53 181.8 0.6 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF83 PDDEXK_1 PF12705.7 gi|530547485|ref|YP_008428013.1| - 0.00032 20.7 0.4 0.00053 20.0 0.4 1.4 1 1 1 2 2 2 1 PD-(D/E)XK nuclease superfamily PDDEXK_3 PF13366.6 gi|530547485|ref|YP_008428013.1| - 0.009 16.4 0.2 0.015 15.6 0.2 1.4 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily HycI PF01750.18 gi|530547485|ref|YP_008428013.1| - 0.036 13.9 0.1 0.051 13.4 0.1 1.2 1 0 0 1 1 1 0 Hydrogenase maturation protease DEAD PF00270.29 gi|530547486|ref|YP_008428014.1| - 5.6e-14 52.3 0.0 1.5e-13 50.9 0.0 1.7 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|530547486|ref|YP_008428014.1| - 2.3e-08 34.4 0.0 6.5e-08 32.9 0.0 1.8 1 1 1 2 2 2 1 Helicase conserved C-terminal domain HD_6 PF18019.1 gi|530547486|ref|YP_008428014.1| - 0.00021 21.5 0.0 0.00084 19.5 0.0 2.1 1 1 0 1 1 1 1 HD domain HD PF01966.22 gi|530547486|ref|YP_008428014.1| - 0.00026 21.2 0.1 0.00063 20.0 0.1 1.6 1 0 0 1 1 1 1 HD domain ResIII PF04851.15 gi|530547486|ref|YP_008428014.1| - 0.0016 18.5 0.0 0.0037 17.3 0.0 1.6 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Cas_Cas5d PF09704.10 gi|530547487|ref|YP_008428015.1| - 2.9e-08 33.9 0.7 4.6e-07 30.0 0.7 2.1 1 1 0 1 1 1 1 CRISPR-associated protein (Cas_Cas5) DevR PF01905.16 gi|530547488|ref|YP_008428016.1| - 1.7e-15 56.8 0.0 1.9e-14 53.4 0.0 2.1 1 1 0 1 1 1 1 CRISPR-associated negative auto-regulator DevR/Csa2 Cas_CXXC_CXXC PF09706.10 gi|530547489|ref|YP_008428017.1| - 3.9e-05 23.8 0.3 0.00031 20.9 0.3 2.3 1 1 0 1 1 1 1 CRISPR-associated protein (Cas_CXXC_CXXC) PknG_TPR PF16918.5 gi|530547489|ref|YP_008428017.1| - 0.16 10.7 0.0 0.28 9.9 0.0 1.3 1 0 0 1 1 1 0 Protein kinase G tetratricopeptide repeat Cas_Cas6 PF01881.16 gi|530547490|ref|YP_008428018.1| - 4.2e-34 118.2 0.0 5.8e-34 117.7 0.0 1.2 1 0 0 1 1 1 1 CRISPR associated protein Cas6 DUF2924 PF11149.8 gi|530547490|ref|YP_008428018.1| - 0.0046 17.3 0.1 0.038 14.4 0.0 2.4 3 0 0 3 3 3 1 Protein of unknown function (DUF2924) Ribonuc_red_lgC PF02867.15 gi|530547491|ref|YP_008428019.1| - 9.2e-229 760.3 0.0 1.2e-228 759.9 0.0 1.2 1 0 0 1 1 1 1 Ribonucleotide reductase, barrel domain Ribonuc_red_lgN PF00317.21 gi|530547491|ref|YP_008428019.1| - 8.8e-31 105.8 0.1 2.9e-30 104.1 0.1 2.0 1 0 0 1 1 1 1 Ribonucleotide reductase, all-alpha domain LAGLIDADG_3 PF14528.6 gi|530547491|ref|YP_008428019.1| - 1.3e-25 89.5 1.2 1.7e-21 76.3 0.5 2.9 2 0 0 2 2 2 2 LAGLIDADG-like domain ATP-cone PF03477.16 gi|530547491|ref|YP_008428019.1| - 4.9e-22 78.3 1.9 1.5e-21 76.7 0.7 2.6 3 0 0 3 3 3 1 ATP cone domain Intein_splicing PF14890.6 gi|530547491|ref|YP_008428019.1| - 5.7e-19 68.4 0.0 3.7e-18 65.8 0.0 2.5 1 1 0 1 1 1 1 Intein splicing domain LAGLIDADG_WhiA PF14527.6 gi|530547491|ref|YP_008428019.1| - 4e-05 23.6 2.3 0.029 14.5 0.0 3.6 4 0 0 4 4 4 2 WhiA LAGLIDADG-like domain Hint_2 PF13403.6 gi|530547491|ref|YP_008428019.1| - 0.0056 17.0 0.0 2.2 8.6 0.0 2.5 2 0 0 2 2 2 2 Hint domain Rubrerythrin PF02915.17 gi|530547492|ref|YP_008428020.1| - 3.2e-09 37.3 9.6 9.3e-06 26.1 1.9 2.1 2 0 0 2 2 2 2 Rubrerythrin MiaE PF06175.11 gi|530547492|ref|YP_008428020.1| - 0.00035 20.3 2.0 0.00043 19.9 2.0 1.2 1 0 0 1 1 1 1 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) Cation_efflux PF01545.21 gi|530547493|ref|YP_008428021.1| - 1.2e-46 159.0 16.3 1.4e-46 158.8 16.3 1.1 1 0 0 1 1 1 1 Cation efflux family ZT_dimer PF16916.5 gi|530547493|ref|YP_008428021.1| - 3.2e-23 81.6 2.0 6.1e-23 80.7 2.0 1.5 1 0 0 1 1 1 1 Dimerisation domain of Zinc Transporter Na_H_Exchanger PF00999.21 gi|530547493|ref|YP_008428021.1| - 0.0034 16.2 1.7 0.0034 16.2 1.7 2.3 2 1 0 2 2 2 1 Sodium/hydrogen exchanger family BON PF04972.17 gi|530547493|ref|YP_008428021.1| - 0.0061 16.8 0.7 0.11 12.8 0.0 2.4 2 0 0 2 2 2 1 BON domain PAP2_C PF14360.6 gi|530547493|ref|YP_008428021.1| - 3.3 8.3 6.3 0.31 11.6 0.3 2.3 3 0 0 3 3 3 0 PAP2 superfamily C-terminal MtaB PF12176.8 gi|530547494|ref|YP_008428022.1| - 0.014 14.2 1.6 0.016 14.1 1.6 1.0 1 0 0 1 1 1 0 Methanol-cobalamin methyltransferase B subunit Radical_SAM PF04055.21 gi|530547495|ref|YP_008428023.1| - 6.6e-11 42.9 2.2 3.3e-08 34.1 0.3 2.4 2 1 1 3 3 3 2 Radical SAM superfamily Na_Ca_ex PF01699.24 gi|530547496|ref|YP_008428024.1| - 4.3e-51 172.8 36.4 1.4e-26 93.3 12.7 2.0 2 0 0 2 2 2 2 Sodium/calcium exchanger protein DUF739 PF05339.11 gi|530547496|ref|YP_008428024.1| - 0.078 13.1 0.0 0.46 10.7 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF739) DeoC PF01791.9 gi|530547497|ref|YP_008428025.1| - 2.4e-23 83.0 5.3 2.9e-23 82.7 5.3 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase NanE PF04131.14 gi|530547497|ref|YP_008428025.1| - 0.00021 20.6 1.1 0.00029 20.1 1.1 1.3 1 0 0 1 1 1 1 Putative N-acetylmannosamine-6-phosphate epimerase IMPDH PF00478.25 gi|530547497|ref|YP_008428025.1| - 0.0093 15.0 0.9 0.01 14.9 0.9 1.2 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain DHO_dh PF01180.21 gi|530547497|ref|YP_008428025.1| - 0.021 14.1 3.8 0.045 13.0 3.0 2.0 1 1 1 2 2 2 0 Dihydroorotate dehydrogenase DUF1884 PF08967.10 gi|530547498|ref|YP_008428026.1| - 4.2e-16 59.0 0.1 8.9e-16 57.9 0.1 1.6 1 1 0 1 1 1 1 Domain of unknown function (DUF1884) Host_attach PF10116.9 gi|530547498|ref|YP_008428026.1| - 0.12 13.0 0.0 0.19 12.3 0.0 1.4 1 0 0 1 1 1 0 Protein required for attachment to host cells Exog_C PF18026.1 gi|530547498|ref|YP_008428026.1| - 0.18 11.9 1.9 4.1 7.6 0.0 3.0 3 0 0 3 3 3 0 Endo/exonuclease (EXOG) C-terminal domain ECF-ribofla_trS PF07155.12 gi|530547499|ref|YP_008428027.1| - 1.3e-38 132.7 19.5 1.3e-38 132.7 19.5 1.4 1 1 0 1 1 1 1 ECF-type riboflavin transporter, S component ECF_trnsprt PF12822.7 gi|530547499|ref|YP_008428027.1| - 1.6e-06 28.3 18.6 1.6e-06 28.3 18.6 2.0 1 1 1 2 2 2 2 ECF transporter, substrate-specific component 7TM-7TMR_HD PF07698.11 gi|530547499|ref|YP_008428027.1| - 0.0011 18.8 9.9 0.0013 18.5 9.9 1.2 1 0 0 1 1 1 1 7TM receptor with intracellular HD hydrolase Gemini_mov PF01708.16 gi|530547499|ref|YP_008428027.1| - 0.5 10.2 2.4 1.1 9.1 2.4 1.7 1 0 0 1 1 1 0 Geminivirus putative movement protein MscL PF01741.18 gi|530547499|ref|YP_008428027.1| - 3.6 7.9 11.5 9.2 6.6 0.2 2.9 2 1 0 2 2 2 0 Large-conductance mechanosensitive channel, MscL Aminotran_3 PF00202.21 gi|530547500|ref|YP_008428028.1| - 1.1e-116 389.8 0.0 1.3e-116 389.6 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Pyr_redox_2 PF07992.14 gi|530547501|ref|YP_008428029.1| - 4.2e-58 196.9 2.6 4.9e-58 196.7 2.6 1.0 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|530547501|ref|YP_008428029.1| - 5.4e-29 101.4 3.5 3.7e-24 85.5 0.2 2.1 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|530547501|ref|YP_008428029.1| - 3.8e-23 81.8 8.6 4.6e-19 68.8 1.9 4.0 3 1 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|530547501|ref|YP_008428029.1| - 3.9e-16 59.1 0.4 8.7e-06 25.1 0.1 4.1 4 0 0 4 4 4 4 Glucose inhibited division protein A FAD_binding_2 PF00890.24 gi|530547501|ref|YP_008428029.1| - 1.9e-12 47.0 4.0 1.4e-05 24.4 0.1 4.7 3 2 2 5 5 5 3 FAD binding domain FAD_binding_3 PF01494.19 gi|530547501|ref|YP_008428029.1| - 1.2e-10 41.2 0.3 3.1e-05 23.4 0.0 2.3 2 0 0 2 2 2 2 FAD binding domain DAO PF01266.24 gi|530547501|ref|YP_008428029.1| - 4.7e-10 39.6 6.9 0.012 15.3 0.7 4.0 3 1 1 4 4 4 3 FAD dependent oxidoreductase FAD_oxidored PF12831.7 gi|530547501|ref|YP_008428029.1| - 9.5e-10 38.4 4.7 5.7e-07 29.2 0.1 3.1 2 1 1 3 3 3 1 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|530547501|ref|YP_008428029.1| - 4e-09 35.7 0.7 0.00035 19.4 0.2 3.7 4 0 0 4 4 4 3 HI0933-like protein NAD_binding_7 PF13241.6 gi|530547501|ref|YP_008428029.1| - 7.7e-08 32.7 0.8 0.0011 19.4 0.3 3.3 3 1 0 3 3 3 2 Putative NAD(P)-binding Thi4 PF01946.17 gi|530547501|ref|YP_008428029.1| - 1.9e-07 30.6 0.3 0.00038 19.8 0.1 2.5 2 0 0 2 2 2 2 Thi4 family Lycopene_cycl PF05834.12 gi|530547501|ref|YP_008428029.1| - 3.2e-06 26.5 0.4 0.18 10.8 0.1 3.6 4 0 0 4 4 4 2 Lycopene cyclase protein NAD_binding_8 PF13450.6 gi|530547501|ref|YP_008428029.1| - 6.7e-06 26.2 0.3 0.00095 19.4 0.1 2.5 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain K_oxygenase PF13434.6 gi|530547501|ref|YP_008428029.1| - 6.9e-05 22.1 0.0 0.009 15.2 0.0 3.3 2 1 2 4 4 4 1 L-lysine 6-monooxygenase (NADPH-requiring) Shikimate_DH PF01488.20 gi|530547501|ref|YP_008428029.1| - 0.00023 21.2 0.5 0.31 11.1 0.0 3.3 3 0 0 3 3 3 1 Shikimate / quinate 5-dehydrogenase AlaDh_PNT_C PF01262.21 gi|530547501|ref|YP_008428029.1| - 0.00087 18.6 4.6 0.038 13.3 0.0 2.7 3 0 0 3 3 3 2 Alanine dehydrogenase/PNT, C-terminal domain XdhC_C PF13478.6 gi|530547501|ref|YP_008428029.1| - 0.001 19.6 0.0 0.024 15.1 0.0 2.3 2 0 0 2 2 2 1 XdhC Rossmann domain PALP PF00291.25 gi|530547501|ref|YP_008428029.1| - 0.0025 17.3 0.3 0.041 13.3 0.1 2.4 2 1 0 2 2 2 1 Pyridoxal-phosphate dependent enzyme IlvN PF07991.12 gi|530547501|ref|YP_008428029.1| - 0.0028 17.3 0.2 0.0064 16.1 0.2 1.7 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain Trp_halogenase PF04820.14 gi|530547501|ref|YP_008428029.1| - 0.0063 15.4 3.5 0.18 10.6 0.2 2.6 2 1 1 3 3 3 1 Tryptophan halogenase 2-Hacid_dh_C PF02826.19 gi|530547501|ref|YP_008428029.1| - 0.077 12.4 1.9 2.2 7.6 0.1 2.8 3 0 0 3 3 3 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YdjM PF04307.14 gi|530547502|ref|YP_008428030.1| - 2.1e-12 46.7 4.4 2.8e-12 46.3 4.4 1.1 1 0 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase PAP_assoc PF03828.19 gi|530547502|ref|YP_008428030.1| - 0.13 12.5 0.2 0.31 11.3 0.2 1.7 1 0 0 1 1 1 0 Cid1 family poly A polymerase TctB PF07331.11 gi|530547502|ref|YP_008428030.1| - 0.71 10.2 16.2 0.023 15.0 10.3 1.6 2 1 0 2 2 2 0 Tripartite tricarboxylate transporter TctB family Na_Ca_ex PF01699.24 gi|530547502|ref|YP_008428030.1| - 3.8 7.4 11.9 0.32 10.9 3.1 2.5 3 0 0 3 3 3 0 Sodium/calcium exchanger protein ATPase_2 PF01637.18 gi|530547503|ref|YP_008428031.1| - 0.00032 20.7 0.2 0.0013 18.7 0.1 1.9 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea NACHT PF05729.12 gi|530547503|ref|YP_008428031.1| - 0.00091 19.2 0.1 0.36 10.7 0.0 2.9 3 0 0 3 3 3 1 NACHT domain AAA PF00004.29 gi|530547503|ref|YP_008428031.1| - 0.0024 18.3 0.4 0.013 15.9 0.4 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|530547503|ref|YP_008428031.1| - 0.0033 17.7 0.0 0.01 16.1 0.0 1.8 1 1 0 1 1 1 1 AAA domain CEP44 PF15007.6 gi|530547503|ref|YP_008428031.1| - 0.022 14.9 0.1 0.096 12.9 0.0 2.0 2 1 0 2 2 2 0 Centrosomal spindle body, CEP44 ATPase PF06745.13 gi|530547503|ref|YP_008428031.1| - 0.023 14.1 0.1 0.062 12.6 0.0 1.7 2 0 0 2 2 2 0 KaiC AAA_7 PF12775.7 gi|530547503|ref|YP_008428031.1| - 0.023 14.2 0.1 0.039 13.5 0.1 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_assoc_2 PF16193.5 gi|530547503|ref|YP_008428031.1| - 0.039 14.3 0.0 0.098 13.0 0.0 1.6 1 0 0 1 1 1 0 AAA C-terminal domain ResIII PF04851.15 gi|530547503|ref|YP_008428031.1| - 0.043 13.8 0.0 0.068 13.2 0.0 1.3 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit AAA_16 PF13191.6 gi|530547503|ref|YP_008428031.1| - 0.054 13.9 0.0 0.13 12.7 0.0 1.6 1 0 0 1 1 1 0 AAA ATPase domain NB-ARC PF00931.22 gi|530547503|ref|YP_008428031.1| - 0.077 12.2 0.0 0.94 8.6 0.0 2.3 2 0 0 2 2 2 0 NB-ARC domain TniB PF05621.11 gi|530547503|ref|YP_008428031.1| - 0.091 12.2 0.5 0.38 10.2 0.5 2.0 1 1 0 1 1 1 0 Bacterial TniB protein AAA_14 PF13173.6 gi|530547503|ref|YP_008428031.1| - 0.099 12.7 1.5 2.8 8.0 1.5 2.7 1 1 0 1 1 1 0 AAA domain Choline_kin_N PF04428.14 gi|530547503|ref|YP_008428031.1| - 0.17 11.6 0.0 0.55 9.9 0.0 1.9 2 0 0 2 2 2 0 Choline kinase N terminus THUMP PF02926.17 gi|530547504|ref|YP_008428032.1| - 1e-23 84.0 1.8 1.3e-23 83.7 1.8 1.1 1 0 0 1 1 1 1 THUMP domain RsbU_N PF08673.10 gi|530547504|ref|YP_008428032.1| - 0.097 12.8 0.5 0.84 9.8 0.1 2.2 2 0 0 2 2 2 0 Phosphoserine phosphatase RsbU, N-terminal domain QueC PF06508.13 gi|530547505|ref|YP_008428033.1| - 1.7e-63 213.9 0.0 2e-63 213.7 0.0 1.0 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC ATP_bind_3 PF01171.20 gi|530547505|ref|YP_008428033.1| - 3.7e-06 26.8 0.0 0.00019 21.3 0.0 2.1 2 0 0 2 2 2 1 PP-loop family ThiI PF02568.14 gi|530547505|ref|YP_008428033.1| - 3.8e-05 23.3 0.0 0.16 11.6 0.0 2.4 2 1 0 2 2 2 2 Thiamine biosynthesis protein (ThiI) Arginosuc_synth PF00764.19 gi|530547505|ref|YP_008428033.1| - 5.6e-05 22.6 0.0 9.9e-05 21.8 0.0 1.4 1 0 0 1 1 1 1 Arginosuccinate synthase Diphthami_syn_2 PF01902.17 gi|530547505|ref|YP_008428033.1| - 0.00056 19.5 0.1 0.0014 18.2 0.0 1.7 2 0 0 2 2 2 1 Diphthamide synthase PAPS_reduct PF01507.19 gi|530547505|ref|YP_008428033.1| - 0.0022 18.1 0.0 0.069 13.2 0.0 2.1 2 0 0 2 2 2 1 Phosphoadenosine phosphosulfate reductase family Asn_synthase PF00733.21 gi|530547505|ref|YP_008428033.1| - 0.0067 16.1 0.0 0.009 15.7 0.0 1.1 1 0 0 1 1 1 1 Asparagine synthase tRNA_Me_trans PF03054.16 gi|530547505|ref|YP_008428033.1| - 0.021 13.6 0.0 0.03 13.1 0.0 1.3 1 0 0 1 1 1 0 tRNA methyl transferase CAF1 PF04857.20 gi|530547505|ref|YP_008428033.1| - 0.058 12.6 0.0 0.079 12.1 0.0 1.2 1 0 0 1 1 1 0 CAF1 family ribonuclease NAD_synthase PF02540.17 gi|530547505|ref|YP_008428033.1| - 0.07 12.2 0.1 0.28 10.3 0.0 1.9 2 0 0 2 2 2 0 NAD synthase T6_Ig_like PF18002.1 gi|530547505|ref|YP_008428033.1| - 0.09 12.7 0.1 0.42 10.5 0.0 2.1 1 1 1 2 2 2 0 T6 antigen Ig like domain DUF4023 PF13215.6 gi|530547505|ref|YP_008428033.1| - 0.21 11.6 0.0 0.46 10.5 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF4023) ABC2_membrane_4 PF12730.7 gi|530547506|ref|YP_008428034.1| - 0.12 12.3 8.0 1.2 9.0 0.0 2.0 1 1 1 2 2 2 0 ABC-2 family transporter protein DUF2627 PF11118.8 gi|530547506|ref|YP_008428034.1| - 0.29 11.7 6.4 0.16 12.6 3.8 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2627) DUF99 PF01949.16 gi|530547508|ref|YP_008428036.1| - 1.5e-62 210.3 0.2 1.7e-62 210.1 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF99 CutA1 PF03091.15 gi|530547509|ref|YP_008428037.1| - 6.4e-33 112.6 0.4 7.1e-33 112.4 0.4 1.0 1 0 0 1 1 1 1 CutA1 divalent ion tolerance protein Acylphosphatase PF00708.18 gi|530547510|ref|YP_008428038.1| - 2e-28 98.6 0.0 2.2e-28 98.5 0.0 1.0 1 0 0 1 1 1 1 Acylphosphatase SbcD_C PF12320.8 gi|564287473|ref|YP_008428039.3| - 0.085 13.2 0.0 0.14 12.4 0.0 1.4 1 0 0 1 1 1 0 Type 5 capsule protein repressor C-terminal domain DUF460 PF04312.13 gi|530547512|ref|YP_008428040.1| - 1.7e-50 170.4 0.1 5.6e-50 168.7 0.1 2.0 1 0 0 1 1 1 1 Protein of unknown function (DUF460) acVLRF1 PF18859.1 gi|530547512|ref|YP_008428040.1| - 6.7e-06 26.4 0.0 1.8e-05 25.0 0.0 1.7 1 0 0 1 1 1 1 Actinobacteria/chloroflexi VLRF1 release factor RPW8 PF05659.11 gi|530547512|ref|YP_008428040.1| - 0.00084 19.0 9.4 0.0023 17.6 1.7 3.0 3 0 0 3 3 3 1 Arabidopsis broad-spectrum mildew resistance protein RPW8 DUF2797 PF10977.8 gi|530547512|ref|YP_008428040.1| - 0.002 18.1 1.4 0.002 18.1 1.4 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF2797) baeRF_family10 PF18854.1 gi|530547512|ref|YP_008428040.1| - 0.0041 17.4 1.7 0.16 12.2 0.1 2.7 2 0 0 2 2 2 1 Bacterial archaeo-eukaryotic release factor family 10 TSC22 PF01166.18 gi|530547512|ref|YP_008428040.1| - 0.014 15.7 1.2 0.014 15.7 1.2 2.9 3 0 0 3 3 3 0 TSC-22/dip/bun family HR1 PF02185.16 gi|530547512|ref|YP_008428040.1| - 0.045 13.9 11.9 0.092 12.9 10.8 2.2 1 1 0 1 1 1 0 Hr1 repeat RTBV_P46 PF06216.11 gi|530547512|ref|YP_008428040.1| - 0.46 9.3 6.3 0.054 12.4 2.0 1.5 2 0 0 2 2 2 0 Rice tungro bacilliform virus P46 protein TMPIT PF07851.13 gi|530547512|ref|YP_008428040.1| - 0.51 9.5 3.2 1 8.6 3.2 1.5 1 0 0 1 1 1 0 TMPIT-like protein PASTA PF03793.19 gi|530547512|ref|YP_008428040.1| - 1.3 8.9 5.1 12 5.8 0.0 4.5 5 1 0 5 5 5 0 PASTA domain SlyX PF04102.12 gi|530547512|ref|YP_008428040.1| - 5.9 7.6 16.3 0.35 11.5 5.0 3.7 3 1 0 4 4 3 0 SlyX FAM76 PF16046.5 gi|530547512|ref|YP_008428040.1| - 7.6 5.8 9.1 15 4.9 9.1 1.4 1 0 0 1 1 1 0 FAM76 protein HTH_34 PF13601.6 gi|530547513|ref|YP_008428041.1| - 9.3e-22 77.0 0.1 1.1e-21 76.8 0.1 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_5 PF01022.20 gi|530547513|ref|YP_008428041.1| - 7.9e-10 38.4 0.1 2.7e-09 36.8 0.0 1.9 3 0 0 3 3 3 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|530547513|ref|YP_008428041.1| - 1.1e-09 38.2 0.2 3.3e-09 36.7 0.1 1.8 1 1 1 2 2 2 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|530547513|ref|YP_008428041.1| - 0.001 18.9 0.0 0.0016 18.3 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|530547513|ref|YP_008428041.1| - 0.0014 18.1 0.0 0.0026 17.3 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding PadR PF03551.14 gi|530547513|ref|YP_008428041.1| - 0.0039 17.1 0.0 0.0053 16.7 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HxlR PF01638.17 gi|530547513|ref|YP_008428041.1| - 0.11 12.4 0.1 0.17 11.8 0.1 1.4 1 1 0 1 1 1 0 HxlR-like helix-turn-helix B-block_TFIIIC PF04182.12 gi|530547513|ref|YP_008428041.1| - 0.16 12.2 0.0 0.19 11.9 0.0 1.2 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC Radical_SAM PF04055.21 gi|530547515|ref|YP_008428043.1| - 1.1e-09 38.9 0.0 2e-09 38.1 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily zf-ribbon_3 PF13248.6 gi|530547515|ref|YP_008428043.1| - 9.4e-05 21.7 4.6 0.12 11.8 0.1 3.4 3 0 0 3 3 3 2 zinc-ribbon domain DZR PF12773.7 gi|530547515|ref|YP_008428043.1| - 0.00021 21.3 0.1 0.00021 21.3 0.1 2.8 3 0 0 3 3 3 1 Double zinc ribbon zf-C4_Topoisom PF01396.19 gi|530547515|ref|YP_008428043.1| - 0.00025 20.8 4.5 0.03 14.1 0.1 3.8 3 0 0 3 3 3 1 Topoisomerase DNA binding C4 zinc finger DiS_P_DiS PF06750.13 gi|530547515|ref|YP_008428043.1| - 0.00044 20.3 0.1 0.0011 19.1 0.1 1.7 1 0 0 1 1 1 1 Bacterial Peptidase A24 N-terminal domain zinc_ribbon_2 PF13240.6 gi|530547515|ref|YP_008428043.1| - 0.0012 18.5 9.3 0.093 12.5 0.2 3.4 3 0 0 3 3 3 2 zinc-ribbon domain ADK_lid PF05191.14 gi|530547515|ref|YP_008428043.1| - 0.0078 16.2 0.4 0.34 10.9 0.0 2.9 3 0 0 3 3 3 1 Adenylate kinase, active site lid NRDD PF13597.6 gi|530547515|ref|YP_008428043.1| - 0.023 13.5 0.2 0.035 12.9 0.2 1.3 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase Zn-ribbon_8 PF09723.10 gi|530547515|ref|YP_008428043.1| - 0.024 14.8 2.5 2 8.6 0.0 3.3 3 0 0 3 3 3 0 Zinc ribbon domain zf_UBZ PF18439.1 gi|530547515|ref|YP_008428043.1| - 0.043 13.4 4.5 0.63 9.7 0.1 3.0 3 0 0 3 3 3 0 Ubiquitin-Binding Zinc Finger CoiA PF06054.11 gi|530547515|ref|YP_008428043.1| - 0.06 12.5 0.2 0.06 12.5 0.2 1.7 2 0 0 2 2 1 0 Competence protein CoiA-like family zf-LITAF-like PF10601.9 gi|530547515|ref|YP_008428043.1| - 0.19 12.0 2.9 30 5.0 0.0 3.5 3 0 0 3 3 3 0 LITAF-like zinc ribbon domain zf-dskA_traR PF01258.17 gi|530547515|ref|YP_008428043.1| - 0.89 9.5 7.5 1.2 9.2 0.1 3.0 3 0 0 3 3 3 0 Prokaryotic dksA/traR C4-type zinc finger Zn_ribbon_SprT PF17283.2 gi|530547515|ref|YP_008428043.1| - 1.2 9.1 10.0 19 5.2 0.0 3.7 4 0 0 4 4 3 0 SprT-like zinc ribbon domain DNA_ligase_ZBD PF03119.16 gi|530547515|ref|YP_008428043.1| - 1.2 9.2 5.3 7.8 6.6 0.0 3.2 3 0 0 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain Ogr_Delta PF04606.12 gi|530547515|ref|YP_008428043.1| - 1.5 8.9 5.5 3.5 7.7 0.0 2.9 3 0 0 3 3 2 0 Ogr/Delta-like zinc finger zf-NADH-PPase PF09297.11 gi|530547515|ref|YP_008428043.1| - 1.8 8.3 0.0 1.8 8.3 0.0 3.7 4 0 0 4 4 4 0 NADH pyrophosphatase zinc ribbon domain HypA PF01155.19 gi|530547515|ref|YP_008428043.1| - 2.2 8.3 5.8 2 8.5 0.0 3.0 2 1 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA UPF0547 PF10571.9 gi|530547515|ref|YP_008428043.1| - 3.8 7.7 9.7 0.63 10.2 0.4 3.1 3 0 0 3 3 3 0 Uncharacterised protein family UPF0547 DpnI PF06044.12 gi|530547515|ref|YP_008428043.1| - 4.6 6.8 6.2 27 4.3 1.1 3.3 3 1 0 3 3 3 0 Dam-replacing family zf-ISL3 PF14690.6 gi|530547515|ref|YP_008428043.1| - 5.1 7.8 11.8 4.5 8.0 0.2 3.2 4 0 0 4 4 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 TF_Zn_Ribbon PF08271.12 gi|530547515|ref|YP_008428043.1| - 7.4 6.2 11.4 0.73 9.4 1.7 3.6 3 1 0 3 3 3 0 TFIIB zinc-binding CpXC PF14353.6 gi|530547515|ref|YP_008428043.1| - 9.2 6.3 6.8 9.5 6.3 0.0 2.8 2 1 1 3 3 2 0 CpXC protein ATP_bind_3 PF01171.20 gi|530547516|ref|YP_008428044.1| - 6.8e-16 58.5 0.0 1.6e-15 57.3 0.0 1.6 1 1 0 1 1 1 1 PP-loop family tRNA_Me_trans PF03054.16 gi|530547516|ref|YP_008428044.1| - 7.9e-05 21.6 0.0 0.00012 21.0 0.0 1.2 1 0 0 1 1 1 1 tRNA methyl transferase PAPS_reduct PF01507.19 gi|530547516|ref|YP_008428044.1| - 0.0027 17.8 0.0 0.0086 16.1 0.0 2.0 1 1 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family zn-ribbon_14 PF16503.5 gi|530547516|ref|YP_008428044.1| - 0.0069 15.9 2.6 0.0069 15.9 2.6 2.8 3 0 0 3 3 3 1 Zinc-ribbon CTU2 PF10288.9 gi|530547516|ref|YP_008428044.1| - 0.0082 16.4 0.9 0.061 13.6 0.1 2.5 2 1 0 2 2 2 1 Cytoplasmic tRNA 2-thiolation protein 2 RecR PF02132.15 gi|530547516|ref|YP_008428044.1| - 0.012 15.2 1.3 0.012 15.2 1.3 2.5 3 0 0 3 3 3 0 RecR protein QueC PF06508.13 gi|530547516|ref|YP_008428044.1| - 0.064 12.7 0.0 0.12 11.9 0.0 1.6 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC Asn_synthase PF00733.21 gi|530547516|ref|YP_008428044.1| - 0.068 12.8 0.0 0.17 11.5 0.0 1.6 2 0 0 2 2 2 0 Asparagine synthase NAD_synthase PF02540.17 gi|530547516|ref|YP_008428044.1| - 0.079 12.1 0.0 0.13 11.4 0.0 1.3 1 0 0 1 1 1 0 NAD synthase C1_2 PF03107.16 gi|530547516|ref|YP_008428044.1| - 0.087 13.2 0.3 0.087 13.2 0.3 2.8 3 0 0 3 3 3 0 C1 domain SopA PF13981.6 gi|530547516|ref|YP_008428044.1| - 0.14 12.5 0.0 0.25 11.8 0.0 1.3 1 0 0 1 1 1 0 SopA-like central domain ATPase PF06745.13 gi|530547517|ref|YP_008428045.1| - 4.4e-06 26.2 0.0 7.4e-06 25.5 0.0 1.4 1 0 0 1 1 1 1 KaiC LDcluster4 PF18306.1 gi|530547518|ref|YP_008428046.1| - 6.3e-34 116.8 0.1 7e-34 116.7 0.1 1.0 1 0 0 1 1 1 1 SLOG cluster4 family Lysine_decarbox PF03641.14 gi|530547518|ref|YP_008428046.1| - 8.8e-10 38.8 0.5 1.8e-08 34.5 0.1 2.1 1 1 1 2 2 2 1 Possible lysine decarboxylase TPALS PF18178.1 gi|530547518|ref|YP_008428046.1| - 0.00024 20.7 0.6 0.1 12.1 0.2 2.5 1 1 2 3 3 3 2 TIR- and PNP-associating SLOG family LSDAT_prok PF18171.1 gi|530547518|ref|YP_008428046.1| - 0.00036 19.8 0.0 0.021 14.1 0.0 2.0 2 0 0 2 2 2 1 SLOG in TRPM, prokaryote TP_methylase PF00590.20 gi|530547518|ref|YP_008428046.1| - 0.061 13.2 0.0 2.2 8.2 0.0 2.1 2 0 0 2 2 2 0 Tetrapyrrole (Corrin/Porphyrin) Methylases SPOUT_MTase_2 PF14419.6 gi|530547518|ref|YP_008428046.1| - 0.085 12.2 0.0 0.14 11.5 0.0 1.4 1 0 0 1 1 1 0 AF2226-like SPOUT RNA Methylase fused to THUMP GTP1_OBG PF01018.22 gi|530547518|ref|YP_008428046.1| - 0.087 12.4 0.0 0.17 11.4 0.0 1.4 1 0 0 1 1 1 0 GTP1/OBG DAGK_cat PF00781.24 gi|530547518|ref|YP_008428046.1| - 0.41 10.3 2.3 7.6 6.2 0.1 2.6 2 1 1 3 3 3 0 Diacylglycerol kinase catalytic domain Peptidase_M50 PF02163.22 gi|530547519|ref|YP_008428047.1| - 3e-23 82.4 3.2 6.5e-23 81.3 3.2 1.6 1 1 0 1 1 1 1 Peptidase family M50 PDZ_2 PF13180.6 gi|530547519|ref|YP_008428047.1| - 2e-10 40.9 0.0 3.2e-10 40.2 0.0 1.3 1 0 0 1 1 1 1 PDZ domain PDZ PF00595.24 gi|530547519|ref|YP_008428047.1| - 2.4e-08 34.2 0.2 4.5e-08 33.3 0.2 1.4 1 0 0 1 1 1 1 PDZ domain PDZ_6 PF17820.1 gi|530547519|ref|YP_008428047.1| - 5.6e-08 32.5 0.0 9.4e-08 31.8 0.0 1.4 1 0 0 1 1 1 1 PDZ domain Tricorn_PDZ PF14685.6 gi|530547519|ref|YP_008428047.1| - 0.0097 15.9 0.1 0.017 15.1 0.1 1.4 1 0 0 1 1 1 1 Tricorn protease PDZ domain BPL_LplA_LipB PF03099.19 gi|530547520|ref|YP_008428048.1| - 3e-14 53.0 0.0 5.1e-14 52.3 0.0 1.3 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family DUF674 PF05056.12 gi|530547520|ref|YP_008428048.1| - 0.036 13.0 0.0 0.047 12.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF674) Peptidase_S24 PF00717.23 gi|530547521|ref|YP_008428049.1| - 3.2e-08 33.4 0.4 9.4e-08 31.9 0.4 1.9 1 1 1 2 2 2 1 Peptidase S24-like HAS-barrel PF09378.10 gi|530547521|ref|YP_008428049.1| - 0.1 12.8 0.1 0.14 12.3 0.1 1.3 1 0 0 1 1 1 0 HAS barrel domain DUF531 PF04407.12 gi|530547522|ref|YP_008428050.1| - 6.4e-78 260.7 0.0 7.3e-78 260.5 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF531) SPOUT_MTase_2 PF14419.6 gi|530547522|ref|YP_008428050.1| - 0.00014 21.3 0.0 0.0002 20.8 0.0 1.2 1 0 0 1 1 1 1 AF2226-like SPOUT RNA Methylase fused to THUMP Methyltrn_RNA_4 PF09936.9 gi|530547522|ref|YP_008428050.1| - 0.06 13.2 0.0 0.22 11.4 0.0 1.7 2 0 0 2 2 2 0 SAM-dependent RNA methyltransferase TPR_12 PF13424.6 gi|530547523|ref|YP_008428051.1| - 9.7e-10 38.6 5.5 0.0029 17.9 1.0 5.1 5 1 1 6 6 5 2 Tetratricopeptide repeat TPR_1 PF00515.28 gi|530547523|ref|YP_008428051.1| - 1.5e-06 27.8 10.5 0.0014 18.4 1.6 4.6 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_7 PF13176.6 gi|530547523|ref|YP_008428051.1| - 2.3e-05 24.1 1.0 0.05 13.6 0.0 4.2 4 0 0 4 4 3 1 Tetratricopeptide repeat TPR_2 PF07719.17 gi|530547523|ref|YP_008428051.1| - 4.6e-05 23.2 15.9 0.0035 17.3 1.2 5.4 7 0 0 7 7 4 2 Tetratricopeptide repeat PPR PF01535.20 gi|530547523|ref|YP_008428051.1| - 0.00011 22.2 6.0 1.8 9.0 0.0 5.8 6 0 0 6 6 6 2 PPR repeat TPR_10 PF13374.6 gi|530547523|ref|YP_008428051.1| - 0.00021 21.0 0.6 0.047 13.6 0.0 4.1 5 0 0 5 5 3 1 Tetratricopeptide repeat RPN7 PF10602.9 gi|530547523|ref|YP_008428051.1| - 0.00031 20.5 2.0 0.0065 16.2 0.1 3.0 3 0 0 3 3 3 1 26S proteasome subunit RPN7 TPR_6 PF13174.6 gi|530547523|ref|YP_008428051.1| - 0.00086 19.8 3.0 0.039 14.6 0.4 4.3 5 0 0 5 5 3 1 Tetratricopeptide repeat SNAP PF14938.6 gi|530547523|ref|YP_008428051.1| - 0.0035 16.8 1.7 0.75 9.2 0.0 2.4 2 1 0 3 3 2 1 Soluble NSF attachment protein, SNAP TPR_8 PF13181.6 gi|530547523|ref|YP_008428051.1| - 0.0044 17.1 9.2 0.034 14.4 1.5 4.2 4 0 0 4 4 4 1 Tetratricopeptide repeat TPR_14 PF13428.6 gi|530547523|ref|YP_008428051.1| - 0.0053 17.5 2.1 31 5.7 0.1 5.2 5 0 0 5 5 5 0 Tetratricopeptide repeat ATP13 PF12921.7 gi|530547523|ref|YP_008428051.1| - 0.0086 15.9 0.6 6.8 6.6 0.0 3.4 2 1 1 3 3 3 1 Mitochondrial ATPase expression TPR_MalT PF17874.1 gi|530547523|ref|YP_008428051.1| - 0.012 15.0 0.1 0.23 10.8 0.0 2.5 1 1 1 2 2 2 0 MalT-like TPR region ANAPC3 PF12895.7 gi|530547523|ref|YP_008428051.1| - 0.013 15.8 6.1 5.5 7.3 0.7 3.8 4 0 0 4 4 4 0 Anaphase-promoting complex, cyclosome, subunit 3 SRP_TPR_like PF17004.5 gi|530547523|ref|YP_008428051.1| - 0.013 15.5 7.1 0.17 11.9 0.2 3.3 2 1 0 2 2 2 0 Putative TPR-like repeat PPR_2 PF13041.6 gi|530547523|ref|YP_008428051.1| - 0.022 15.0 4.1 22 5.3 0.0 4.9 5 0 0 5 5 5 0 PPR repeat family TPR_11 PF13414.6 gi|530547523|ref|YP_008428051.1| - 0.067 12.9 1.9 41 4.0 0.2 4.1 4 0 0 4 4 4 0 TPR repeat TPR_16 PF13432.6 gi|530547523|ref|YP_008428051.1| - 0.15 12.7 1.2 13 6.5 0.2 3.2 3 0 0 3 3 2 0 Tetratricopeptide repeat Vta1 PF04652.16 gi|530547523|ref|YP_008428051.1| - 0.19 11.7 0.2 0.19 11.7 0.2 2.6 3 1 0 3 3 3 0 Vta1 like TPR_19 PF14559.6 gi|530547523|ref|YP_008428051.1| - 0.3 11.6 10.1 9 6.9 0.5 4.5 4 1 1 5 5 5 0 Tetratricopeptide repeat DUF357 PF04010.13 gi|530547523|ref|YP_008428051.1| - 0.54 10.4 5.3 1.1 9.3 1.8 3.3 3 1 1 4 4 3 0 Protein of unknown function (DUF357) DUF1955 PF09205.10 gi|530547523|ref|YP_008428051.1| - 0.74 9.5 6.0 0.32 10.7 0.1 2.8 4 0 0 4 4 4 0 Domain of unknown function (DUF1955) DUF1771 PF08590.10 gi|530547523|ref|YP_008428051.1| - 0.89 10.0 3.5 4.2 7.8 1.0 2.8 2 1 1 3 3 3 0 Domain of unknown function (DUF1771) MIT PF04212.18 gi|530547523|ref|YP_008428051.1| - 1.2 9.2 10.6 15 5.7 0.0 4.2 4 1 1 5 5 4 0 MIT (microtubule interacting and transport) domain Peptidase_M19 PF01244.21 gi|530547524|ref|YP_008428052.1| - 8.3e-97 324.2 0.0 9.2e-97 324.0 0.0 1.0 1 0 0 1 1 1 1 Membrane dipeptidase (Peptidase family M19) Methyltransf_25 PF13649.6 gi|530547525|ref|YP_008428053.1| - 6.6e-10 39.6 0.0 1.2e-09 38.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|530547525|ref|YP_008428053.1| - 6.6e-10 39.5 0.0 1.2e-09 38.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|530547525|ref|YP_008428053.1| - 1.9e-07 31.0 0.0 2.8e-07 30.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.10 gi|530547525|ref|YP_008428053.1| - 3.1e-07 30.1 0.0 4.7e-07 29.5 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase MTS PF05175.14 gi|530547525|ref|YP_008428053.1| - 3.9e-07 29.8 0.0 6.1e-07 29.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Spermine_synth PF01564.17 gi|530547525|ref|YP_008428053.1| - 1.1e-06 28.2 0.0 1.7e-06 27.6 0.0 1.3 1 0 0 1 1 1 1 Spermine/spermidine synthase domain Cons_hypoth95 PF03602.15 gi|530547525|ref|YP_008428053.1| - 1.2e-06 28.3 0.0 1.9e-06 27.7 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_30 PF05430.11 gi|530547525|ref|YP_008428053.1| - 3.4e-05 23.7 0.0 7.2e-05 22.7 0.0 1.5 1 0 0 1 1 1 1 S-adenosyl-L-methionine-dependent methyltransferase Met_10 PF02475.16 gi|530547525|ref|YP_008428053.1| - 9.4e-05 22.2 0.0 0.00016 21.5 0.0 1.3 1 0 0 1 1 1 1 Met-10+ like-protein N6_N4_Mtase PF01555.18 gi|530547525|ref|YP_008428053.1| - 0.00047 19.9 0.0 0.015 15.0 0.0 2.4 2 0 0 2 2 2 1 DNA methylase Ubie_methyltran PF01209.18 gi|530547525|ref|YP_008428053.1| - 0.00072 19.0 0.0 0.0024 17.2 0.0 1.7 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_24 PF13578.6 gi|530547525|ref|YP_008428053.1| - 0.00091 20.2 0.0 0.0017 19.4 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain SAM_MT PF04445.13 gi|530547525|ref|YP_008428053.1| - 0.001 18.6 0.0 0.0018 17.7 0.0 1.4 1 0 0 1 1 1 1 Putative SAM-dependent methyltransferase Methyltransf_23 PF13489.6 gi|530547525|ref|YP_008428053.1| - 0.0013 18.6 0.0 0.0022 17.8 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain HicA_toxin PF07927.12 gi|530547525|ref|YP_008428053.1| - 0.0029 17.6 1.0 0.01 15.8 0.1 2.2 2 0 0 2 2 2 1 HicA toxin of bacterial toxin-antitoxin, UPF0020 PF01170.18 gi|530547525|ref|YP_008428053.1| - 0.0064 16.2 0.0 0.0096 15.6 0.0 1.3 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 RrnaAD PF00398.20 gi|530547525|ref|YP_008428053.1| - 0.023 13.8 0.0 0.032 13.3 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Methyltransf_4 PF02390.17 gi|530547525|ref|YP_008428053.1| - 0.03 13.8 0.0 0.072 12.5 0.0 1.6 1 1 0 1 1 1 0 Putative methyltransferase N6_Mtase PF02384.16 gi|530547525|ref|YP_008428053.1| - 0.037 13.3 0.0 0.072 12.3 0.0 1.5 1 0 0 1 1 1 0 N-6 DNA Methylase Methyltr_RsmB-F PF01189.17 gi|530547525|ref|YP_008428053.1| - 0.16 11.6 0.0 0.29 10.7 0.0 1.4 1 0 0 1 1 1 0 16S rRNA methyltransferase RsmB/F DUF1965 PF09248.10 gi|530547525|ref|YP_008428053.1| - 0.17 11.7 0.0 1.6 8.6 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF1965) ThiI PF02568.14 gi|530547526|ref|YP_008428054.1| - 5e-08 32.8 0.0 5.6e-07 29.3 0.0 2.6 1 1 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) QueC PF06508.13 gi|530547526|ref|YP_008428054.1| - 3.8e-07 29.8 0.0 3.7e-06 26.6 0.0 2.3 2 1 1 3 3 3 1 Queuosine biosynthesis protein QueC ATP_bind_3 PF01171.20 gi|530547526|ref|YP_008428054.1| - 4e-05 23.4 0.0 0.00028 20.7 0.0 2.1 1 1 0 1 1 1 1 PP-loop family PAPS_reduct PF01507.19 gi|530547526|ref|YP_008428054.1| - 0.00041 20.4 0.0 0.0014 18.7 0.0 1.8 1 1 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family NAD_synthase PF02540.17 gi|530547526|ref|YP_008428054.1| - 0.0016 17.6 0.0 0.0026 16.9 0.0 1.3 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.16 gi|530547526|ref|YP_008428054.1| - 0.0021 16.9 0.0 0.0068 15.2 0.0 1.9 2 0 0 2 2 2 1 tRNA methyl transferase Diphthami_syn_2 PF01902.17 gi|530547526|ref|YP_008428054.1| - 0.029 13.9 0.0 0.077 12.5 0.0 1.7 2 0 0 2 2 2 0 Diphthamide synthase AIRS PF00586.24 gi|530547527|ref|YP_008428055.1| - 3.2e-15 56.6 0.0 1e-14 54.9 0.0 1.8 2 0 0 2 2 2 1 AIR synthase related protein, N-terminal domain AIRS_C PF02769.22 gi|530547527|ref|YP_008428055.1| - 9.4e-15 55.1 0.3 2.9e-14 53.5 0.0 1.9 2 0 0 2 2 2 1 AIR synthase related protein, C-terminal domain eRF1_1 PF03463.15 gi|530547528|ref|YP_008428056.1| - 3.8e-31 107.8 0.7 6e-31 107.1 0.7 1.3 1 0 0 1 1 1 1 eRF1 domain 1 eRF1_3 PF03465.15 gi|530547528|ref|YP_008428056.1| - 4.2e-24 85.2 2.6 4.2e-24 85.2 2.6 2.0 2 1 0 2 2 2 1 eRF1 domain 3 eRF1_2 PF03464.15 gi|530547528|ref|YP_008428056.1| - 2.5e-16 60.2 0.2 5.8e-16 59.0 0.2 1.6 1 0 0 1 1 1 1 eRF1 domain 2 baeRF_family10 PF18854.1 gi|530547528|ref|YP_008428056.1| - 0.00032 21.0 0.1 0.0016 18.7 0.1 2.1 1 1 0 1 1 1 1 Bacterial archaeo-eukaryotic release factor family 10 baeRF_family12 PF18856.1 gi|530547528|ref|YP_008428056.1| - 0.0013 19.3 0.8 0.045 14.3 0.1 2.7 2 0 0 2 2 2 1 Bacterial archaeo-eukaryotic release factor family 12 WbqC PF08889.11 gi|530547528|ref|YP_008428056.1| - 0.017 15.0 0.1 6.9 6.5 0.0 2.3 2 0 0 2 2 2 0 WbqC-like protein family IQ_SEC7_PH PF16453.5 gi|530547528|ref|YP_008428056.1| - 0.08 12.9 0.6 0.39 10.7 0.5 2.0 1 1 1 2 2 2 0 PH domain DUF2183 PF09949.9 gi|530547528|ref|YP_008428056.1| - 0.14 12.5 0.1 0.79 10.1 0.0 2.2 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2183) Ribosomal_L15e PF00827.17 gi|530547529|ref|YP_008428057.1| - 1.1e-88 296.0 5.8 1.3e-88 295.8 5.8 1.0 1 0 0 1 1 1 1 Ribosomal L15 DUF4274 PF14096.6 gi|530547530|ref|YP_008428058.1| - 0.018 15.0 0.1 0.037 14.0 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4274) SQHop_cyclase_C PF13243.6 gi|530547531|ref|YP_008428059.1| - 1.2e-06 27.9 0.0 0.00011 21.4 0.0 2.6 3 0 0 3 3 3 2 Squalene-hopene cyclase C-terminal domain Prenyltrans PF00432.21 gi|530547531|ref|YP_008428059.1| - 0.00031 20.4 0.8 11 5.9 0.0 4.9 5 1 0 5 5 5 2 Prenyltransferase and squalene oxidase repeat DUF4855 PF16147.5 gi|530547533|ref|YP_008428061.1| - 6.9e-05 22.1 0.1 0.00021 20.5 0.1 1.7 2 0 0 2 2 2 1 Domain of unknown function (DUF4855) EF-hand_6 PF13405.6 gi|530547533|ref|YP_008428061.1| - 0.0049 16.7 0.3 0.27 11.3 0.1 2.5 2 0 0 2 2 2 1 EF-hand domain EF-hand_1 PF00036.32 gi|530547533|ref|YP_008428061.1| - 0.063 12.8 0.3 0.47 10.1 0.1 2.3 2 0 0 2 2 2 0 EF hand GlcV_C_terminal PF17847.1 gi|530547534|ref|YP_008428062.1| - 0.048 14.1 1.1 0.51 10.8 0.1 2.6 3 0 0 3 3 3 0 Glucose ABC transporter C-terminal domain SQHop_cyclase_C PF13243.6 gi|530547536|ref|YP_008428064.1| - 4.1e-08 32.7 0.0 6.1e-08 32.1 0.0 1.1 1 0 0 1 1 1 1 Squalene-hopene cyclase C-terminal domain Prenyltrans PF00432.21 gi|530547536|ref|YP_008428064.1| - 0.15 11.8 0.0 0.15 11.8 0.0 2.3 3 0 0 3 3 3 0 Prenyltransferase and squalene oxidase repeat DUF3149 PF11346.8 gi|530547537|ref|YP_008428065.1| - 0.047 13.3 0.2 0.096 12.3 0.2 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3149) DUF4855 PF16147.5 gi|530547538|ref|YP_008428066.1| - 3e-09 36.4 1.1 4.5e-09 35.8 1.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4855) Adeno_E3A PF05248.12 gi|530547538|ref|YP_008428066.1| - 0.12 12.4 0.1 0.18 11.8 0.1 1.3 1 0 0 1 1 1 0 Adenovirus E3A Gram_pos_anchor PF00746.21 gi|530547540|ref|YP_008428068.1| - 0.17 11.9 1.8 0.18 11.8 1.6 1.3 1 1 0 1 1 1 0 LPXTG cell wall anchor motif RNA_binding PF01877.17 gi|530547541|ref|YP_008428069.1| - 4e-41 140.0 1.4 5.3e-41 139.6 1.4 1.2 1 0 0 1 1 1 1 RNA binding DUF3552 PF12072.8 gi|530547541|ref|YP_008428069.1| - 0.02 14.3 0.9 0.027 13.9 0.4 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF3552) Maelstrom PF13017.6 gi|530547541|ref|YP_008428069.1| - 0.021 14.5 0.1 0.023 14.4 0.1 1.1 1 0 0 1 1 1 0 piRNA pathway germ-plasm component RNase_P_p30 PF01876.16 gi|530547542|ref|YP_008428070.1| - 1.7e-33 115.9 0.0 2e-33 115.7 0.0 1.0 1 0 0 1 1 1 1 RNase P subunit p30 Ribosomal_L29 PF00831.23 gi|530547542|ref|YP_008428070.1| - 0.0059 16.6 0.1 0.012 15.6 0.1 1.4 1 0 0 1 1 1 1 Ribosomal L29 protein DUF835 PF05763.12 gi|530547543|ref|YP_008428071.1| - 6.7e-32 110.1 1.1 1.2e-31 109.2 1.1 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF835) DUF3112 PF11309.8 gi|530547543|ref|YP_008428071.1| - 0.0029 17.1 1.0 0.29 10.5 0.0 2.7 2 0 0 2 2 2 2 Protein of unknown function (DUF3112) AMP-binding PF00501.28 gi|530547547|ref|YP_008428075.1| - 3e-10 39.3 0.0 4.3e-10 38.8 0.0 1.2 1 0 0 1 1 1 1 AMP-binding enzyme GH3 PF03321.13 gi|530547547|ref|YP_008428075.1| - 7.5e-05 21.8 0.0 0.0002 20.4 0.0 1.7 2 0 0 2 2 2 1 GH3 auxin-responsive promoter HD PF01966.22 gi|530547548|ref|YP_008428076.1| - 2.6e-18 66.4 0.9 7.1e-18 65.0 0.9 1.9 1 0 0 1 1 1 1 HD domain HDOD PF08668.12 gi|530547548|ref|YP_008428076.1| - 0.00028 20.4 0.0 0.00052 19.5 0.0 1.3 1 0 0 1 1 1 1 HDOD domain HTH_3 PF01381.22 gi|530547445|ref|YP_008428077.1| - 7.8e-13 48.3 0.9 3.2e-12 46.3 0.3 2.2 2 0 0 2 2 2 1 Helix-turn-helix HTH_31 PF13560.6 gi|530547445|ref|YP_008428077.1| - 4e-12 46.3 0.2 1.1e-11 44.9 0.1 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_19 PF12844.7 gi|530547445|ref|YP_008428077.1| - 1.1e-07 31.8 0.4 7.5e-07 29.1 0.2 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_17 PF12728.7 gi|530547445|ref|YP_008428077.1| - 0.00043 20.4 0.0 0.03 14.5 0.0 2.6 2 0 0 2 2 2 1 Helix-turn-helix domain MerR PF00376.23 gi|530547445|ref|YP_008428077.1| - 0.00045 19.9 0.0 0.0014 18.4 0.0 1.8 1 0 0 1 1 1 1 MerR family regulatory protein HTH_26 PF13443.6 gi|530547445|ref|YP_008428077.1| - 0.006 17.0 0.0 0.017 15.6 0.0 1.8 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain MerR_1 PF13411.6 gi|530547445|ref|YP_008428077.1| - 0.0061 16.6 0.0 0.025 14.7 0.0 2.1 1 0 0 1 1 1 1 MerR HTH family regulatory protein HTH_8 PF02954.19 gi|530547445|ref|YP_008428077.1| - 0.0072 16.1 0.1 0.019 14.7 0.1 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, Fis family HTH_11 PF08279.12 gi|530547445|ref|YP_008428077.1| - 0.01 15.8 0.0 0.035 14.0 0.0 2.0 1 0 0 1 1 1 1 HTH domain HTH_25 PF13413.6 gi|530547445|ref|YP_008428077.1| - 0.012 15.4 0.2 0.012 15.4 0.2 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_23 PF13384.6 gi|530547445|ref|YP_008428077.1| - 0.013 15.3 0.1 0.05 13.4 0.0 2.0 2 0 0 2 2 2 0 Homeodomain-like domain YdaS_antitoxin PF15943.5 gi|530547445|ref|YP_008428077.1| - 0.026 14.4 0.0 0.27 11.1 0.0 2.4 2 0 0 2 2 2 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_28 PF13518.6 gi|530547445|ref|YP_008428077.1| - 0.031 14.4 0.1 0.39 10.9 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|530547445|ref|YP_008428077.1| - 0.051 13.2 2.1 0.11 12.2 0.0 2.6 3 0 0 3 3 3 0 Sigma-70, region 4 HTH_7 PF02796.15 gi|530547445|ref|YP_008428077.1| - 0.053 13.6 0.1 0.87 9.7 0.0 2.6 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase HTH_10 PF04967.12 gi|530547445|ref|YP_008428077.1| - 0.093 12.6 0.1 2.1 8.2 0.0 2.6 2 0 0 2 2 2 0 HTH DNA binding domain DrrA_P4M PF14860.6 gi|530547445|ref|YP_008428077.1| - 2.3 8.1 5.1 15 5.5 0.2 2.7 3 0 0 3 3 3 0 DrrA phosphatidylinositol 4-phosphate binding domain DUF1743 PF08489.11 gi|530547549|ref|YP_008428078.1| - 1.3e-38 131.6 0.0 4.2e-38 130.0 0.0 1.9 3 0 0 3 3 2 1 Domain of unknown function (DUF1743) tRNA_anti-codon PF01336.25 gi|530547549|ref|YP_008428078.1| - 2e-09 37.3 0.1 3.8e-09 36.4 0.1 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA_anti_2 PF13742.6 gi|530547549|ref|YP_008428078.1| - 4.8e-05 23.5 0.0 0.00011 22.3 0.0 1.6 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain TF_Zn_Ribbon PF08271.12 gi|530547549|ref|YP_008428078.1| - 0.0051 16.3 0.4 0.015 14.8 0.4 1.8 1 0 0 1 1 1 1 TFIIB zinc-binding Prok-RING_1 PF14446.6 gi|530547549|ref|YP_008428078.1| - 0.0093 15.9 2.0 0.016 15.1 2.0 1.3 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 zinc-ribbons_6 PF07191.12 gi|530547549|ref|YP_008428078.1| - 0.011 15.7 0.8 0.017 15.1 0.8 1.2 1 0 0 1 1 1 0 zinc-ribbons Zn_Tnp_IS1595 PF12760.7 gi|530547549|ref|YP_008428078.1| - 0.023 14.6 1.6 0.052 13.5 1.6 1.6 1 0 0 1 1 1 0 Transposase zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|530547549|ref|YP_008428078.1| - 0.058 13.3 3.4 0.12 12.3 3.4 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain HypA PF01155.19 gi|530547549|ref|YP_008428078.1| - 0.067 13.2 0.4 0.16 12.0 0.2 1.7 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA IBR PF01485.21 gi|530547549|ref|YP_008428078.1| - 0.083 13.1 1.5 0.15 12.4 1.5 1.3 1 0 0 1 1 1 0 IBR domain, a half RING-finger domain DNA_RNApol_7kD PF03604.13 gi|530547549|ref|YP_008428078.1| - 0.097 12.4 3.9 0.3 10.8 3.9 1.8 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit Ribosomal_S27 PF01599.19 gi|530547549|ref|YP_008428078.1| - 0.12 12.6 3.0 0.24 11.6 3.0 1.6 1 0 0 1 1 1 0 Ribosomal protein S27a DZR PF12773.7 gi|530547549|ref|YP_008428078.1| - 0.13 12.3 1.6 0.24 11.5 1.6 1.3 1 0 0 1 1 1 0 Double zinc ribbon Zn-ribbon_8 PF09723.10 gi|530547549|ref|YP_008428078.1| - 0.52 10.5 5.8 5.8 7.1 0.7 2.4 1 1 1 2 2 2 0 Zinc ribbon domain zf-IS66 PF13005.7 gi|530547549|ref|YP_008428078.1| - 0.57 10.6 2.7 10 6.6 0.4 2.7 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 RNA_POL_M_15KD PF02150.16 gi|530547549|ref|YP_008428078.1| - 1.8 8.5 4.9 3.7 7.5 4.9 1.5 1 0 0 1 1 1 0 RNA polymerases M/15 Kd subunit zinc_ribbon_2 PF13240.6 gi|530547549|ref|YP_008428078.1| - 2.5 7.9 8.1 5.2 6.9 0.9 2.5 2 0 0 2 2 2 0 zinc-ribbon domain zf-C4_Topoisom PF01396.19 gi|530547549|ref|YP_008428078.1| - 3 7.7 7.7 2 8.3 1.0 2.3 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger YdjO PF14169.6 gi|530547549|ref|YP_008428078.1| - 3.7 7.3 4.9 3.7 7.3 1.4 2.2 1 1 1 2 2 2 0 Cold-inducible protein YdjO Zn_ribbon_recom PF13408.6 gi|530547549|ref|YP_008428078.1| - 5.6 7.6 7.5 13 6.4 0.9 2.6 1 1 1 2 2 2 0 Recombinase zinc beta ribbon domain Lyase_1 PF00206.20 gi|530547550|ref|YP_008428079.1| - 1.3e-60 205.4 0.4 1.8e-60 204.9 0.4 1.1 1 0 0 1 1 1 1 Lyase ADSL_C PF10397.9 gi|530547550|ref|YP_008428079.1| - 1.7e-19 70.2 0.8 4.4e-19 68.8 0.1 2.1 2 0 0 2 2 2 1 Adenylosuccinate lyase C-terminus ASL_C PF08328.11 gi|530547550|ref|YP_008428079.1| - 1e-08 35.2 0.1 2.7e-08 33.9 0.1 1.8 1 0 0 1 1 1 1 Adenylosuccinate lyase C-terminal FumaraseC_C PF10415.9 gi|530547550|ref|YP_008428079.1| - 0.039 14.4 0.1 0.17 12.3 0.1 2.2 1 0 0 1 1 1 0 Fumarase C C-terminus Alba PF01918.21 gi|530547551|ref|YP_008428080.1| - 1e-20 73.3 0.7 1.2e-20 73.0 0.7 1.1 1 0 0 1 1 1 1 Alba Rpp20 PF12328.8 gi|530547551|ref|YP_008428080.1| - 0.0057 16.6 0.1 0.0067 16.4 0.1 1.2 1 0 0 1 1 1 1 Rpp20 subunit of nuclear RNase MRP and P HTH_20 PF12840.7 gi|530547552|ref|YP_008428081.1| - 2e-13 50.2 0.0 3.8e-13 49.3 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|530547552|ref|YP_008428081.1| - 1.8e-09 37.3 0.2 3.9e-09 36.2 0.2 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|530547552|ref|YP_008428081.1| - 5.1e-08 32.3 0.1 1.3e-07 31.0 0.1 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|530547552|ref|YP_008428081.1| - 1.2e-07 31.4 0.0 2.4e-07 30.6 0.0 1.5 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|530547552|ref|YP_008428081.1| - 4.6e-07 29.6 0.2 1e-06 28.5 0.2 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|530547552|ref|YP_008428081.1| - 2.1e-06 27.4 0.1 5.1e-06 26.2 0.1 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_38 PF13936.6 gi|530547552|ref|YP_008428081.1| - 0.00022 20.9 0.0 0.00041 20.1 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.22 gi|530547552|ref|YP_008428081.1| - 0.00027 20.8 0.1 0.0006 19.7 0.1 1.5 1 0 0 1 1 1 1 MarR family Fe_dep_repress PF01325.19 gi|530547552|ref|YP_008428081.1| - 0.00027 21.1 0.1 0.00062 19.9 0.1 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain CENP-B_N PF04218.13 gi|530547552|ref|YP_008428081.1| - 0.00097 18.7 1.1 0.01 15.5 0.0 2.7 3 0 0 3 3 3 1 CENP-B N-terminal DNA-binding domain HTH_23 PF13384.6 gi|530547552|ref|YP_008428081.1| - 0.0013 18.5 0.0 0.0036 17.1 0.0 1.8 1 0 0 1 1 1 1 Homeodomain-like domain GerE PF00196.19 gi|530547552|ref|YP_008428081.1| - 0.0013 18.2 0.0 0.0036 16.8 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family Sigma70_r4_2 PF08281.12 gi|530547552|ref|YP_008428081.1| - 0.002 17.8 0.2 0.0052 16.4 0.0 1.7 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_27 PF13463.6 gi|530547552|ref|YP_008428081.1| - 0.0043 17.5 0.1 0.0074 16.8 0.1 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain Rrf2 PF02082.20 gi|530547552|ref|YP_008428081.1| - 0.0046 17.3 0.2 0.0094 16.3 0.2 1.5 1 0 0 1 1 1 1 Transcriptional regulator Sigma70_r4 PF04545.16 gi|530547552|ref|YP_008428081.1| - 0.0051 16.3 0.0 0.01 15.3 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_10 PF04967.12 gi|530547552|ref|YP_008428081.1| - 0.0067 16.2 0.2 0.027 14.3 0.0 2.0 2 0 0 2 2 2 1 HTH DNA binding domain HTH_40 PF14493.6 gi|530547552|ref|YP_008428081.1| - 0.0076 16.7 0.1 0.018 15.5 0.0 1.6 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|530547552|ref|YP_008428081.1| - 0.014 15.2 0.0 0.033 14.0 0.0 1.7 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|530547552|ref|YP_008428081.1| - 0.018 15.0 0.1 0.04 13.9 0.1 1.6 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_11 PF08279.12 gi|530547552|ref|YP_008428081.1| - 0.024 14.6 0.8 0.045 13.7 0.1 1.9 2 0 0 2 2 2 0 HTH domain DUF742 PF05331.11 gi|530547552|ref|YP_008428081.1| - 0.027 14.3 0.0 0.042 13.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF742) Dimerisation2 PF16864.5 gi|530547552|ref|YP_008428081.1| - 0.028 14.4 0.0 0.11 12.5 0.1 1.9 2 0 0 2 2 2 0 Dimerisation domain PBP_N PF17093.5 gi|530547552|ref|YP_008428081.1| - 0.058 13.6 0.0 0.088 13.1 0.0 1.2 1 0 0 1 1 1 0 Penicillin-binding protein N-terminus RP-C PF03428.13 gi|530547552|ref|YP_008428081.1| - 0.059 13.0 0.0 0.11 12.2 0.0 1.4 1 0 0 1 1 1 0 Replication protein C N-terminal domain HTH_3 PF01381.22 gi|530547552|ref|YP_008428081.1| - 0.064 13.3 0.4 0.14 12.3 0.0 1.7 2 0 0 2 2 1 0 Helix-turn-helix DUF2250 PF10007.9 gi|530547552|ref|YP_008428081.1| - 0.069 13.3 0.2 0.26 11.4 0.2 1.9 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) Sigma54_DBD PF04552.13 gi|530547552|ref|YP_008428081.1| - 0.088 12.5 0.1 0.13 11.9 0.1 1.2 1 0 0 1 1 1 0 Sigma-54, DNA binding domain CBS PF00571.28 gi|530547553|ref|YP_008428082.1| - 6e-23 81.1 6.4 4.7e-12 46.2 2.0 2.3 2 0 0 2 2 2 2 CBS domain Rubredoxin_2 PF18073.1 gi|530547553|ref|YP_008428082.1| - 0.025 14.3 0.9 0.91 9.3 0.0 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain Nudix_N_2 PF14803.6 gi|530547553|ref|YP_008428082.1| - 0.037 13.9 1.7 0.071 13.1 1.7 1.3 1 0 0 1 1 1 0 Nudix N-terminal zinc-ribbon_6 PF10005.9 gi|530547553|ref|YP_008428082.1| - 0.076 13.7 0.1 0.13 13.0 0.1 1.3 1 0 0 1 1 1 0 zinc-ribbon domain zf-dskA_traR PF01258.17 gi|530547553|ref|YP_008428082.1| - 0.21 11.6 3.6 1.5 8.8 3.7 2.1 1 1 0 1 1 1 0 Prokaryotic dksA/traR C4-type zinc finger ADK_lid PF05191.14 gi|530547553|ref|YP_008428082.1| - 0.23 11.5 1.1 13 5.9 0.2 2.4 2 0 0 2 2 2 0 Adenylate kinase, active site lid Desulfoferrod_N PF06397.12 gi|530547553|ref|YP_008428082.1| - 0.32 10.7 3.2 0.63 9.7 3.2 1.5 1 0 0 1 1 1 0 Desulfoferrodoxin, N-terminal domain Proteasome PF00227.26 gi|530547554|ref|YP_008428083.1| - 3.4e-52 176.7 0.1 3.8e-52 176.5 0.1 1.0 1 0 0 1 1 1 1 Proteasome subunit TSNR_N PF04705.12 gi|530547554|ref|YP_008428083.1| - 0.034 14.2 0.0 0.058 13.5 0.0 1.4 1 0 0 1 1 1 0 Thiostrepton-resistance methylase, N terminus DUF4157 PF13699.6 gi|530547555|ref|YP_008428084.1| - 7.8e-07 29.2 0.0 1.5e-06 28.4 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4157) DUF2268 PF10026.9 gi|530547555|ref|YP_008428084.1| - 0.0035 17.0 0.1 0.012 15.2 0.0 1.9 2 0 0 2 2 2 1 Predicted Zn-dependent protease (DUF2268) cobW PF02492.19 gi|530547556|ref|YP_008428085.1| - 7.8e-06 25.6 0.0 1.7e-05 24.5 0.0 1.6 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain PTS_IIB PF02302.17 gi|530547556|ref|YP_008428085.1| - 0.00053 20.6 3.1 1.5 9.6 0.0 4.0 4 1 1 5 5 4 2 PTS system, Lactose/Cellobiose specific IIB subunit B12-binding PF02310.19 gi|530547556|ref|YP_008428085.1| - 0.0082 16.2 0.1 2.2 8.3 0.0 3.6 4 0 0 4 4 4 1 B12 binding domain CbiA PF01656.23 gi|530547556|ref|YP_008428085.1| - 0.0094 16.0 0.9 0.035 14.2 0.6 2.2 2 1 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain PPK2 PF03976.14 gi|530547556|ref|YP_008428085.1| - 0.014 14.9 0.3 0.041 13.4 0.1 1.9 2 1 0 2 2 2 0 Polyphosphate kinase 2 (PPK2) Glyco_tran_WecB PF03808.13 gi|530547556|ref|YP_008428085.1| - 0.022 14.7 0.0 0.87 9.5 0.0 2.8 2 1 1 3 3 3 0 Glycosyl transferase WecB/TagA/CpsF family SWI2_SNF2 PF18766.1 gi|530547556|ref|YP_008428085.1| - 0.033 13.8 0.0 0.079 12.6 0.0 1.6 1 0 0 1 1 1 0 SWI2/SNF2 ATPase Thymidylate_kin PF02223.17 gi|530547556|ref|YP_008428085.1| - 0.068 12.8 0.1 0.16 11.6 0.0 1.6 2 0 0 2 2 2 0 Thymidylate kinase AAA_31 PF13614.6 gi|530547556|ref|YP_008428085.1| - 0.082 12.8 0.5 0.24 11.3 0.1 2.0 2 0 0 2 2 2 0 AAA domain UPF0180 PF03698.13 gi|530547556|ref|YP_008428085.1| - 0.084 13.1 0.1 3.2 8.0 0.0 3.4 4 0 0 4 4 4 0 Uncharacterised protein family (UPF0180) DUF2325 PF10087.9 gi|530547556|ref|YP_008428085.1| - 0.1 12.7 0.1 4.6 7.4 0.0 3.2 4 0 0 4 4 3 0 Uncharacterized protein conserved in bacteria (DUF2325) GTP-bdg_N PF13167.6 gi|530547556|ref|YP_008428085.1| - 0.11 13.2 0.1 1.8 9.3 0.0 2.7 3 0 0 3 3 2 0 GTP-binding GTPase N-terminal Zeta_toxin PF06414.12 gi|530547556|ref|YP_008428085.1| - 0.11 11.8 0.1 0.21 10.9 0.1 1.4 1 0 0 1 1 1 0 Zeta toxin MipZ PF09140.11 gi|530547556|ref|YP_008428085.1| - 0.12 11.7 0.0 0.29 10.4 0.0 1.7 2 0 0 2 2 2 0 ATPase MipZ ParA PF10609.9 gi|530547556|ref|YP_008428085.1| - 0.12 11.8 0.2 0.21 11.0 0.2 1.3 1 0 0 1 1 1 0 NUBPL iron-transfer P-loop NTPase AAA_5 PF07728.14 gi|530547556|ref|YP_008428085.1| - 0.15 12.1 0.0 1.5 8.9 0.0 2.2 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) DUF2179 PF10035.9 gi|530547556|ref|YP_008428085.1| - 0.19 11.5 4.2 6.9 6.5 0.1 3.5 3 0 0 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2179) HBB PF06777.11 gi|530547557|ref|YP_008428086.1| - 8.4e-68 227.8 0.0 1.7e-67 226.8 0.0 1.6 1 0 0 1 1 1 1 Helical and beta-bridge domain Helicase_C_2 PF13307.6 gi|530547557|ref|YP_008428086.1| - 9.6e-38 130.0 0.1 5.1e-37 127.7 0.0 2.1 2 1 0 2 2 2 1 Helicase C-terminal domain DEAD_2 PF06733.15 gi|530547557|ref|YP_008428086.1| - 9.8e-31 106.7 1.2 1.8e-30 105.8 1.2 1.5 1 0 0 1 1 1 1 DEAD_2 ResIII PF04851.15 gi|530547557|ref|YP_008428086.1| - 3.3e-09 37.0 0.8 1.3e-08 35.0 0.8 1.9 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit DEAD PF00270.29 gi|530547557|ref|YP_008428086.1| - 2e-07 30.9 0.1 3.7e-05 23.6 0.1 2.8 2 1 0 2 2 2 1 DEAD/DEAH box helicase AAA_30 PF13604.6 gi|530547557|ref|YP_008428086.1| - 0.0043 16.8 0.0 0.0082 15.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|530547557|ref|YP_008428086.1| - 0.031 14.6 0.2 3.1 8.1 0.0 2.6 1 1 1 2 2 2 0 AAA domain AAA_19 PF13245.6 gi|530547557|ref|YP_008428086.1| - 0.06 13.7 0.0 0.11 12.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain PhoH PF02562.16 gi|530547557|ref|YP_008428086.1| - 0.061 12.8 0.1 1.1 8.6 0.0 2.2 2 0 0 2 2 2 0 PhoH-like protein ECF_trnsprt PF12822.7 gi|530547558|ref|YP_008428087.1| - 0.0042 17.2 0.8 0.0053 16.9 0.8 1.1 1 0 0 1 1 1 1 ECF transporter, substrate-specific component DUF5366 PF17328.2 gi|530547558|ref|YP_008428087.1| - 0.12 12.5 3.7 0.29 11.2 0.4 2.0 1 1 1 2 2 2 0 Family of unknown function (DUF5366) Peptidase_M42 PF05343.14 gi|530547559|ref|YP_008428088.1| - 7e-115 383.0 0.3 8.1e-115 382.8 0.3 1.0 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.28 gi|530547559|ref|YP_008428088.1| - 1.9e-11 44.1 0.0 3.6e-11 43.2 0.0 1.5 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M28 PF04389.17 gi|530547559|ref|YP_008428088.1| - 3.8e-06 26.7 0.0 3.1e-05 23.7 0.0 2.0 2 0 0 2 2 2 1 Peptidase family M28 Peptidase_M18 PF02127.15 gi|530547559|ref|YP_008428088.1| - 0.021 13.6 0.0 0.11 11.3 0.0 1.9 2 0 0 2 2 2 0 Aminopeptidase I zinc metalloprotease (M18) SfsA PF03749.13 gi|530547560|ref|YP_008428089.1| - 1.1e-37 129.1 0.0 1.4e-37 128.7 0.0 1.2 1 0 0 1 1 1 1 Sugar fermentation stimulation protein RE domain SfsA_N PF17746.1 gi|530547560|ref|YP_008428089.1| - 8.5e-12 45.1 0.0 2e-11 43.9 0.0 1.7 1 0 0 1 1 1 1 SfsA N-terminal OB domain Toprim PF01751.22 gi|530547561|ref|YP_008428090.1| - 4.9e-08 33.1 2.5 7.6e-08 32.5 0.1 2.4 2 1 0 2 2 2 1 Toprim domain HALZ PF02183.18 gi|530547561|ref|YP_008428090.1| - 0.0012 19.1 11.9 0.0054 16.9 3.9 2.6 1 1 1 2 2 2 2 Homeobox associated leucine zipper ZapB PF06005.12 gi|530547561|ref|YP_008428090.1| - 0.0016 18.8 5.4 0.0016 18.8 5.4 2.6 2 0 0 2 2 2 1 Cell division protein ZapB Toprim_2 PF13155.6 gi|530547561|ref|YP_008428090.1| - 0.0078 16.6 0.0 0.016 15.6 0.0 1.6 1 0 0 1 1 1 1 Toprim-like Cluap1 PF10234.9 gi|530547561|ref|YP_008428090.1| - 0.027 13.9 5.7 1.3 8.3 2.7 2.1 2 0 0 2 2 2 0 Clusterin-associated protein-1 NEMO PF11577.8 gi|530547561|ref|YP_008428090.1| - 0.051 13.6 0.8 0.051 13.6 0.8 3.1 2 1 1 3 3 3 0 NF-kappa-B essential modulator NEMO YabA PF06156.13 gi|530547561|ref|YP_008428090.1| - 0.078 13.6 9.6 0.093 13.4 4.7 3.0 2 1 2 4 4 4 0 Initiation control protein YabA FapA PF03961.13 gi|530547561|ref|YP_008428090.1| - 0.25 9.9 7.6 0.14 10.7 5.9 1.5 1 1 0 1 1 1 0 Flagellar Assembly Protein A DUF4201 PF13870.6 gi|530547561|ref|YP_008428090.1| - 0.26 11.0 11.3 0.041 13.6 5.2 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4201) DASH_Dad3 PF08656.10 gi|530547561|ref|YP_008428090.1| - 0.27 11.4 7.2 1.8 8.7 1.6 2.5 1 1 1 2 2 2 0 DASH complex subunit Dad3 GIT_CC PF16559.5 gi|530547561|ref|YP_008428090.1| - 0.74 9.7 5.4 1.7 8.6 3.9 2.1 1 1 1 2 2 2 0 GIT coiled-coil Rho guanine nucleotide exchange factor DivIC PF04977.15 gi|530547561|ref|YP_008428090.1| - 1.5 8.6 11.0 0.11 12.3 0.8 3.0 2 1 1 3 3 3 0 Septum formation initiator BLOC1_2 PF10046.9 gi|530547561|ref|YP_008428090.1| - 1.9 8.9 9.3 0.53 10.6 4.2 2.4 2 0 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 ZapA PF05164.13 gi|530547561|ref|YP_008428090.1| - 2.5 8.6 7.2 1.1 9.7 0.2 2.7 2 1 0 2 2 2 0 Cell division protein ZapA Ku_C PF03730.14 gi|530547561|ref|YP_008428090.1| - 2.7 8.7 9.7 1.9 9.2 4.4 2.7 2 1 0 2 2 2 0 Ku70/Ku80 C-terminal arm Rootletin PF15035.6 gi|530547561|ref|YP_008428090.1| - 3.8 7.5 10.3 0.79 9.7 5.5 2.2 1 1 1 2 2 2 0 Ciliary rootlet component, centrosome cohesion GrpE PF01025.19 gi|530547561|ref|YP_008428090.1| - 3.8 7.1 11.9 1.4 8.5 3.2 2.9 3 0 0 3 3 3 0 GrpE TolA_bind_tri PF16331.5 gi|530547561|ref|YP_008428090.1| - 4.3 7.5 6.9 19 5.5 4.3 2.7 2 1 0 2 2 2 0 TolA binding protein trimerisation Cep57_CLD_2 PF14197.6 gi|530547561|ref|YP_008428090.1| - 6.8 6.9 13.9 0.12 12.5 6.2 2.0 2 0 0 2 2 1 0 Centrosome localisation domain of PPC89 Phage_integrase PF00589.22 gi|530547562|ref|YP_008428091.1| - 4e-52 176.5 0.0 6.1e-52 175.9 0.0 1.3 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_4 PF13495.6 gi|530547562|ref|YP_008428091.1| - 5.5e-08 33.2 0.6 2.5e-07 31.1 0.6 2.2 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.17 gi|530547562|ref|YP_008428091.1| - 1.3e-07 31.9 2.5 4.5e-07 30.1 1.0 2.6 2 1 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Phage_integr_3 PF16795.5 gi|530547562|ref|YP_008428091.1| - 1.3e-06 28.5 0.9 0.0023 17.9 0.1 2.4 2 0 0 2 2 2 2 Archaeal phage integrase Pox_D5 PF03288.16 gi|530547562|ref|YP_008428091.1| - 0.003 18.0 2.2 3.1 8.3 0.6 2.9 2 1 0 2 2 2 2 Poxvirus D5 protein-like Integrase_1 PF12835.7 gi|530547562|ref|YP_008428091.1| - 0.034 14.3 0.0 0.082 13.0 0.0 1.7 1 1 0 1 1 1 0 Integrase HTH_23 PF13384.6 gi|530547562|ref|YP_008428091.1| - 0.072 12.9 0.0 23 5.0 0.0 3.5 4 0 0 4 4 4 0 Homeodomain-like domain ADP_PFK_GK PF04587.15 gi|530547563|ref|YP_008428092.1| - 1.4e-107 359.9 0.0 1.6e-107 359.7 0.0 1.0 1 0 0 1 1 1 1 ADP-specific Phosphofructokinase/Glucokinase conserved region Phage_int_SAM_2 PF12834.7 gi|530547563|ref|YP_008428092.1| - 0.063 14.0 0.0 0.16 12.7 0.0 1.6 1 0 0 1 1 1 0 Phage integrase, N-terminal Amdase PF17645.1 gi|530547564|ref|YP_008428093.1| - 1.2e-37 129.6 0.0 1.4e-37 129.4 0.0 1.0 1 0 0 1 1 1 1 Arylmalonate decarboxylase Asp_Glu_race PF01177.22 gi|530547564|ref|YP_008428093.1| - 2.6e-15 56.9 0.0 3.8e-15 56.3 0.0 1.3 1 1 0 1 1 1 1 Asp/Glu/Hydantoin racemase AroM PF07302.11 gi|530547564|ref|YP_008428093.1| - 0.0012 18.3 0.0 0.5 9.7 0.0 2.5 1 1 1 2 2 2 2 AroM protein DeoRC PF00455.22 gi|530547564|ref|YP_008428093.1| - 0.03 14.3 0.0 0.9 9.5 0.0 2.4 2 0 0 2 2 2 0 DeoR C terminal sensor domain Pantoate_transf PF02548.15 gi|530547564|ref|YP_008428093.1| - 0.09 12.1 0.1 9.7 5.5 0.0 2.8 2 1 1 3 3 3 0 Ketopantoate hydroxymethyltransferase Memo PF01875.17 gi|530547565|ref|YP_008428094.1| - 7.7e-72 241.7 0.0 8.8e-72 241.5 0.0 1.0 1 0 0 1 1 1 1 Memo-like protein LigB PF02900.18 gi|530547565|ref|YP_008428094.1| - 8.9e-06 25.0 0.0 1.2e-05 24.5 0.0 1.3 1 0 0 1 1 1 1 Catalytic LigB subunit of aromatic ring-opening dioxygenase GHMP_kinases_N PF00288.26 gi|530547566|ref|YP_008428095.1| - 4.9e-17 61.9 3.2 9.9e-17 60.9 3.2 1.5 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|530547566|ref|YP_008428095.1| - 2.1e-13 50.5 0.5 2.1e-13 50.5 0.5 2.5 2 2 0 2 2 2 1 GHMP kinases C terminal GalKase_gal_bdg PF10509.9 gi|530547566|ref|YP_008428095.1| - 0.003 17.1 0.0 0.0096 15.5 0.0 1.9 1 0 0 1 1 1 1 Galactokinase galactose-binding signature VBS PF08913.10 gi|530547566|ref|YP_008428095.1| - 0.035 14.5 0.2 11 6.5 0.1 2.3 2 0 0 2 2 2 0 Vinculin Binding Site DUF2150 PF09920.9 gi|530547566|ref|YP_008428095.1| - 0.15 12.0 0.3 15 5.5 0.0 2.2 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2150) AA_kinase PF00696.28 gi|530547567|ref|YP_008428096.1| - 1.2e-46 159.3 0.0 1.4e-46 159.1 0.0 1.0 1 0 0 1 1 1 1 Amino acid kinase family GluRS_N PF18466.1 gi|530547567|ref|YP_008428096.1| - 0.066 13.6 0.2 0.46 10.9 0.0 2.4 3 0 0 3 3 3 0 Glutamate--tRNA ligase N-terminal domain G-patch PF01585.23 gi|530547569|ref|YP_008428098.1| - 0.1 12.5 0.1 0.16 11.9 0.1 1.3 1 0 0 1 1 1 0 G-patch domain DUF86 PF01934.17 gi|530547570|ref|YP_008428099.1| - 1.2e-14 54.2 0.0 1.5e-14 53.8 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF86 NTP_transf_2 PF01909.23 gi|530547570|ref|YP_008428099.1| - 0.062 13.6 0.0 0.072 13.4 0.0 1.3 1 1 0 1 1 1 0 Nucleotidyltransferase domain GalKase_gal_bdg PF10509.9 gi|530547571|ref|YP_008428100.1| - 0.0057 16.2 0.0 0.0085 15.6 0.0 1.2 1 0 0 1 1 1 1 Galactokinase galactose-binding signature DUF1525 PF07511.11 gi|530547571|ref|YP_008428100.1| - 0.066 13.4 0.0 0.09 12.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1525) GHMP_kinases_C PF08544.13 gi|530547572|ref|YP_008428101.1| - 7e-08 32.7 1.9 8.5e-08 32.5 1.9 1.1 1 0 0 1 1 1 1 GHMP kinases C terminal Ig_2 PF13895.6 gi|530547573|ref|YP_008428102.1| - 0.036 14.4 0.4 0.21 11.9 0.0 2.2 2 0 0 2 2 2 0 Immunoglobulin domain Wax2_C PF12076.8 gi|530547573|ref|YP_008428102.1| - 0.14 11.9 0.0 0.38 10.4 0.0 1.5 1 1 0 1 1 1 0 WAX2 C-terminal domain DUF5126 PF17166.4 gi|530547575|ref|YP_008428104.1| - 0.074 12.9 0.3 0.19 11.6 0.1 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF5126) Sdh_cyt PF01127.22 gi|530547576|ref|YP_008428105.1| - 0.0061 16.6 0.5 0.0061 16.6 0.5 1.6 2 0 0 2 2 2 1 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DUF3427 PF11907.8 gi|530547577|ref|YP_008428106.1| - 0.02 14.2 0.4 0.033 13.5 0.4 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3427) FMN_dh PF01070.18 gi|530547578|ref|YP_008428107.1| - 2.4e-31 109.0 0.2 2.6e-18 66.2 0.2 2.1 1 1 0 2 2 2 2 FMN-dependent dehydrogenase IMPDH PF00478.25 gi|530547578|ref|YP_008428107.1| - 1.2e-07 31.1 3.4 0.00099 18.2 0.2 3.5 3 1 0 3 3 3 3 IMP dehydrogenase / GMP reductase domain NMO PF03060.15 gi|530547578|ref|YP_008428107.1| - 6.4e-05 22.5 1.3 0.00014 21.4 0.5 1.8 2 0 0 2 2 2 1 Nitronate monooxygenase Glu_synthase PF01645.17 gi|530547578|ref|YP_008428107.1| - 0.0008 18.6 0.5 0.036 13.2 0.2 2.2 2 0 0 2 2 2 2 Conserved region in glutamate synthase His_biosynth PF00977.21 gi|530547578|ref|YP_008428107.1| - 0.0078 15.7 0.0 2.5 7.5 0.0 3.0 2 1 1 3 3 3 1 Histidine biosynthesis protein DUF561 PF04481.12 gi|530547578|ref|YP_008428107.1| - 0.017 14.3 0.0 0.028 13.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF561) RMMBL PF07521.12 gi|530547579|ref|YP_008428108.1| - 3.4e-15 55.7 0.3 2.8e-13 49.6 0.1 2.7 2 0 0 2 2 2 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B PF00753.27 gi|530547579|ref|YP_008428108.1| - 1.3e-14 54.7 0.0 2.4e-14 53.8 0.0 1.5 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|530547579|ref|YP_008428108.1| - 4.7e-08 32.8 0.0 9.3e-08 31.8 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 gi|530547579|ref|YP_008428108.1| - 0.015 14.7 0.1 0.035 13.6 0.1 1.7 1 1 0 1 1 1 0 Metallo-beta-lactamase superfamily domain PDEase_II PF02112.15 gi|530547579|ref|YP_008428108.1| - 0.037 13.1 0.3 0.13 11.3 0.1 1.8 1 1 0 2 2 2 0 cAMP phosphodiesterases class-II polyprenyl_synt PF00348.17 gi|530547580|ref|YP_008428109.1| - 1.7e-72 243.6 0.0 2.2e-72 243.2 0.0 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase SQS_PSY PF00494.19 gi|530547580|ref|YP_008428109.1| - 0.006 16.1 0.0 0.15 11.5 0.0 2.2 2 0 0 2 2 2 1 Squalene/phytoene synthase HTH_24 PF13412.6 gi|530547581|ref|YP_008428110.1| - 6.6e-23 80.0 3.4 4.8e-11 42.0 0.1 2.3 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|530547581|ref|YP_008428110.1| - 1.4e-16 60.1 0.5 8.9e-10 38.3 0.2 2.3 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family MarR PF01047.22 gi|530547581|ref|YP_008428110.1| - 1.8e-13 50.2 1.0 1.2e-07 31.5 0.1 2.7 3 0 0 3 3 3 2 MarR family HTH_20 PF12840.7 gi|530547581|ref|YP_008428110.1| - 1.1e-12 47.8 0.0 1.4e-05 25.0 0.0 2.2 2 0 0 2 2 2 2 Helix-turn-helix domain MarR_2 PF12802.7 gi|530547581|ref|YP_008428110.1| - 2.5e-11 43.3 0.0 4.7e-06 26.4 0.0 2.2 2 0 0 2 2 2 2 MarR family HTH_28 PF13518.6 gi|530547581|ref|YP_008428110.1| - 5.4e-08 32.8 0.1 9.1e-06 25.7 0.0 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_34 PF13601.6 gi|530547581|ref|YP_008428110.1| - 1.4e-07 31.6 0.1 0.00031 20.9 0.0 2.2 2 0 0 2 2 2 2 Winged helix DNA-binding domain HTH_38 PF13936.6 gi|530547581|ref|YP_008428110.1| - 1.9e-07 30.7 0.1 1.4e-05 24.7 0.1 2.5 2 0 0 2 2 2 1 Helix-turn-helix domain TrmB PF01978.19 gi|530547581|ref|YP_008428110.1| - 5e-07 29.5 0.0 0.00033 20.5 0.1 2.2 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_micro PF17007.5 gi|530547581|ref|YP_008428110.1| - 5.3e-07 28.8 0.8 1.4e-05 24.1 0.3 2.0 1 1 1 2 2 2 1 HTH-like GerE PF00196.19 gi|530547581|ref|YP_008428110.1| - 1.6e-06 27.6 0.1 4.6e-05 22.9 0.0 2.2 2 0 0 2 2 2 1 Bacterial regulatory proteins, luxR family HTH_11 PF08279.12 gi|530547581|ref|YP_008428110.1| - 1.8e-06 27.8 2.2 0.0053 16.7 0.4 2.4 2 0 0 2 2 2 2 HTH domain HTH_IclR PF09339.10 gi|530547581|ref|YP_008428110.1| - 5.3e-06 26.1 0.0 0.00054 19.7 0.0 2.2 2 0 0 2 2 2 1 IclR helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|530547581|ref|YP_008428110.1| - 6.6e-06 25.7 0.0 9.3e-05 22.0 0.0 2.2 2 0 0 2 2 2 1 Sigma-70, region 4 Rrf2 PF02082.20 gi|530547581|ref|YP_008428110.1| - 7.4e-06 26.2 0.1 0.0037 17.6 0.0 2.2 2 0 0 2 2 2 1 Transcriptional regulator HTH_10 PF04967.12 gi|530547581|ref|YP_008428110.1| - 3e-05 23.7 0.1 0.27 11.1 0.0 2.5 2 0 0 2 2 2 2 HTH DNA binding domain HTH_29 PF13551.6 gi|530547581|ref|YP_008428110.1| - 3e-05 23.9 0.0 5.4e-05 23.1 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn helix HTH_AsnC-type PF13404.6 gi|530547581|ref|YP_008428110.1| - 3.7e-05 23.5 0.0 0.06 13.2 0.0 2.5 2 0 0 2 2 2 2 AsnC-type helix-turn-helix domain B-block_TFIIIC PF04182.12 gi|530547581|ref|YP_008428110.1| - 4.4e-05 23.5 0.9 0.31 11.2 0.1 2.3 2 0 0 2 2 2 2 B-block binding subunit of TFIIIC HTH_27 PF13463.6 gi|530547581|ref|YP_008428110.1| - 6.4e-05 23.4 0.1 0.0012 19.2 0.1 2.2 2 0 0 2 2 2 1 Winged helix DNA-binding domain LexA_DNA_bind PF01726.16 gi|530547581|ref|YP_008428110.1| - 7.2e-05 22.5 0.4 0.018 14.8 0.1 2.6 2 1 0 2 2 2 1 LexA DNA binding domain FaeA PF04703.12 gi|530547581|ref|YP_008428110.1| - 0.00016 22.0 0.1 0.011 16.1 0.0 2.1 2 0 0 2 2 2 1 FaeA-like protein HTH_23 PF13384.6 gi|530547581|ref|YP_008428110.1| - 0.00022 20.9 0.0 0.0056 16.5 0.0 2.8 2 1 1 3 3 3 1 Homeodomain-like domain MerR_1 PF13411.6 gi|530547581|ref|YP_008428110.1| - 0.00039 20.5 0.1 0.56 10.3 0.0 2.4 2 0 0 2 2 2 2 MerR HTH family regulatory protein Penicillinase_R PF03965.16 gi|530547581|ref|YP_008428110.1| - 0.0007 19.9 0.0 0.03 14.7 0.0 2.3 1 1 0 2 2 2 1 Penicillinase repressor HTH_12 PF08461.10 gi|530547581|ref|YP_008428110.1| - 0.00086 19.2 1.5 1.1 9.3 0.1 2.6 2 0 0 2 2 2 2 Ribonuclease R winged-helix domain Sigma70_r4 PF04545.16 gi|530547581|ref|YP_008428110.1| - 0.0012 18.4 0.1 0.022 14.3 0.0 2.4 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_Crp_2 PF13545.6 gi|530547581|ref|YP_008428110.1| - 0.0015 18.4 0.1 0.037 14.0 0.0 2.3 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_7 PF02796.15 gi|530547581|ref|YP_008428110.1| - 0.0016 18.5 0.0 0.042 13.9 0.0 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain of resolvase HTH_Tnp_ISL3 PF13542.6 gi|530547581|ref|YP_008428110.1| - 0.002 17.5 0.0 0.022 14.2 0.0 2.6 4 0 0 4 4 3 1 Helix-turn-helix domain of transposase family ISL3 HTH_CodY PF08222.11 gi|530547581|ref|YP_008428110.1| - 0.0021 17.5 0.0 0.39 10.3 0.0 2.3 2 0 0 2 2 2 1 CodY helix-turn-helix domain HTH_36 PF13730.6 gi|530547581|ref|YP_008428110.1| - 0.0026 17.7 0.2 0.025 14.5 0.0 2.5 3 0 0 3 3 2 1 Helix-turn-helix domain HTH_40 PF14493.6 gi|530547581|ref|YP_008428110.1| - 0.003 18.0 0.5 0.24 11.9 0.0 2.3 1 1 1 2 2 2 1 Helix-turn-helix domain BLACT_WH PF17778.1 gi|530547581|ref|YP_008428110.1| - 0.0043 17.0 0.6 0.081 12.9 0.2 2.3 2 0 0 2 2 2 1 Beta-lactamase associated winged helix domain TnsD PF15978.5 gi|530547581|ref|YP_008428110.1| - 0.0053 15.8 0.1 0.054 12.5 0.1 1.9 1 1 0 2 2 2 1 Tn7-like transposition protein D MerR PF00376.23 gi|530547581|ref|YP_008428110.1| - 0.0093 15.7 0.2 4.3 7.2 0.1 2.8 2 1 0 2 2 2 0 MerR family regulatory protein Fe_dep_repress PF01325.19 gi|530547581|ref|YP_008428110.1| - 0.011 16.0 0.0 0.35 11.1 0.0 2.3 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain PheRS_DBD1 PF18552.1 gi|530547581|ref|YP_008428110.1| - 0.016 15.0 0.1 3.4 7.5 0.1 2.9 3 0 0 3 3 3 0 PheRS DNA binding domain 1 HTH_Tnp_Tc3_2 PF01498.18 gi|530547581|ref|YP_008428110.1| - 0.023 15.0 0.0 0.061 13.6 0.0 1.8 1 0 0 1 1 1 0 Transposase DUF4423 PF14394.6 gi|530547581|ref|YP_008428110.1| - 0.026 14.3 0.0 0.053 13.2 0.0 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_30 PF13556.6 gi|530547581|ref|YP_008428110.1| - 0.029 14.2 0.3 0.15 11.9 0.0 2.1 2 0 0 2 2 2 0 PucR C-terminal helix-turn-helix domain RepL PF05732.11 gi|530547581|ref|YP_008428110.1| - 0.056 12.9 0.1 4.3 6.7 0.1 2.1 1 1 0 2 2 2 0 Firmicute plasmid replication protein (RepL) PaaX PF07848.12 gi|530547581|ref|YP_008428110.1| - 0.062 13.5 0.0 3.3 8.0 0.0 2.5 3 0 0 3 3 2 0 PaaX-like protein HTH_41 PF14502.6 gi|530547581|ref|YP_008428110.1| - 0.075 12.7 0.1 0.39 10.4 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain RP-C PF03428.13 gi|530547581|ref|YP_008428110.1| - 0.087 12.5 0.0 4.2 7.0 0.0 2.4 3 0 0 3 3 2 0 Replication protein C N-terminal domain GntR PF00392.21 gi|530547581|ref|YP_008428110.1| - 0.087 12.5 0.0 3 7.6 0.0 2.3 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family RPA_C PF08784.11 gi|530547581|ref|YP_008428110.1| - 0.11 13.1 0.1 3.1 8.5 0.0 2.1 2 0 0 2 2 2 0 Replication protein A C terminal UTRA PF07702.13 gi|530547581|ref|YP_008428110.1| - 0.12 12.3 0.0 0.21 11.4 0.0 1.3 1 0 0 1 1 1 0 UTRA domain Bac_export_2 PF01312.19 gi|530547582|ref|YP_008428111.1| - 2.8 7.1 7.2 3.5 6.7 7.2 1.0 1 0 0 1 1 1 0 FlhB HrpN YscU SpaS Family VPDSG-CTERM PF18205.1 gi|530547582|ref|YP_008428111.1| - 6.8 6.6 9.2 0.47 10.3 1.2 2.5 2 0 0 2 2 2 0 VPDSG-CTERM motif NusG PF02357.19 gi|530547583|ref|YP_008428112.1| - 0.00077 19.9 0.0 0.00082 19.8 0.0 1.0 1 0 0 1 1 1 1 Transcription termination factor nusG AsnC_trans_reg PF01037.21 gi|530547583|ref|YP_008428112.1| - 0.0057 16.6 0.0 0.0064 16.4 0.0 1.0 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain Usp PF00582.26 gi|530547584|ref|YP_008428113.1| - 1.4e-18 67.8 0.0 1.8e-18 67.4 0.0 1.2 1 0 0 1 1 1 1 Universal stress protein family DUF5603 PF18231.1 gi|530547584|ref|YP_008428113.1| - 0.034 14.5 0.3 0.064 13.6 0.3 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF5603) DUF3110 PF11360.8 gi|530547584|ref|YP_008428113.1| - 0.24 11.6 0.6 11 6.3 0.5 2.6 1 1 1 2 2 2 0 Protein of unknown function (DUF3110) CitMHS PF03600.16 gi|530547585|ref|YP_008428114.1| - 4.2e-53 180.5 26.0 4.2e-53 180.5 26.0 1.7 1 1 1 2 2 2 1 Citrate transporter Na_sulph_symp PF00939.19 gi|530547585|ref|YP_008428114.1| - 1.3e-22 80.5 32.8 2.7e-12 46.5 17.5 2.0 1 1 1 2 2 2 2 Sodium:sulfate symporter transmembrane region ArsB PF02040.15 gi|530547585|ref|YP_008428114.1| - 8.6e-18 64.9 28.9 9.9e-18 64.7 28.9 1.0 1 0 0 1 1 1 1 Arsenical pump membrane protein NhaB PF06450.12 gi|530547585|ref|YP_008428114.1| - 1.8e-06 27.1 10.1 1.8e-06 27.1 10.1 2.7 2 1 0 2 2 2 1 Bacterial Na+/H+ antiporter B (NhaB) Usp PF00582.26 gi|530547586|ref|YP_008428115.1| - 0.0038 17.7 0.0 0.0072 16.8 0.0 1.4 1 1 0 1 1 1 1 Universal stress protein family Lon_C PF05362.13 gi|530547587|ref|YP_008428116.1| - 3e-15 56.3 1.1 5.6e-15 55.4 1.1 1.4 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain ChlI PF13541.6 gi|530547587|ref|YP_008428116.1| - 0.00023 21.0 0.2 0.00097 19.0 0.0 2.2 2 0 0 2 2 2 1 Subunit ChlI of Mg-chelatase Hypoth_Ymh PF09509.10 gi|530547587|ref|YP_008428116.1| - 0.025 14.5 0.5 1.8 8.5 0.0 2.6 2 0 0 2 2 2 0 Protein of unknown function (Hypoth_ymh) TMF_TATA_bd PF12325.8 gi|530547587|ref|YP_008428116.1| - 0.068 13.4 4.4 2.5 8.4 0.3 3.1 3 0 0 3 3 3 0 TATA element modulatory factor 1 TATA binding HEPN PF05168.14 gi|530547587|ref|YP_008428116.1| - 2.6 8.2 10.5 9.6 6.4 0.9 3.7 2 2 0 2 2 2 0 HEPN domain Nitroreductase PF00881.24 gi|530547588|ref|YP_008428117.1| - 5.1e-34 117.8 0.0 6e-34 117.5 0.0 1.1 1 0 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.6 gi|530547588|ref|YP_008428117.1| - 7.6e-09 35.5 0.1 0.0014 18.2 0.0 2.5 2 1 0 2 2 2 2 Putative TM nitroreductase DUF4079 PF13301.6 gi|530547589|ref|YP_008428118.1| - 0.0005 20.2 3.5 0.00056 20.1 3.5 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF4079) Cytochrom_B561 PF03188.16 gi|530547589|ref|YP_008428118.1| - 0.061 13.5 5.0 0.085 13.0 5.0 1.2 1 0 0 1 1 1 0 Eukaryotic cytochrome b561 DUF2206 PF09971.9 gi|530547589|ref|YP_008428118.1| - 0.087 11.6 7.2 0.095 11.4 7.2 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2206) Cupin_2 PF07883.11 gi|530547590|ref|YP_008428119.1| - 8.7e-17 60.6 0.1 1.4e-16 60.0 0.1 1.3 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.19 gi|530547590|ref|YP_008428119.1| - 6.1e-09 35.9 0.1 8.3e-09 35.5 0.1 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain MannoseP_isomer PF01050.18 gi|530547590|ref|YP_008428119.1| - 4.8e-06 26.5 0.0 5.3e-06 26.4 0.0 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase Auxin_BP PF02041.16 gi|530547590|ref|YP_008428119.1| - 0.00014 21.5 0.0 0.00037 20.2 0.0 1.6 1 1 0 1 1 1 1 Auxin binding protein Cupin_1 PF00190.22 gi|530547590|ref|YP_008428119.1| - 0.0002 21.0 0.0 0.00024 20.8 0.0 1.1 1 0 0 1 1 1 1 Cupin Cupin_3 PF05899.12 gi|530547590|ref|YP_008428119.1| - 0.0045 16.6 0.0 0.0063 16.2 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF861) Ectoine_synth PF06339.12 gi|530547590|ref|YP_008428119.1| - 0.0058 16.8 0.0 0.0064 16.7 0.0 1.0 1 0 0 1 1 1 1 Ectoine synthase PCO_ADO PF07847.12 gi|530547590|ref|YP_008428119.1| - 0.077 12.4 0.0 0.097 12.1 0.0 1.2 1 0 0 1 1 1 0 PCO_ADO Xan_ur_permease PF00860.20 gi|530547591|ref|YP_008428120.1| - 2.2e-96 323.0 39.1 2.5e-96 322.7 39.1 1.0 1 0 0 1 1 1 1 Permease family DUF2157 PF09925.9 gi|530547591|ref|YP_008428120.1| - 0.024 14.4 7.6 0.33 10.7 0.7 2.9 2 1 0 2 2 2 0 Predicted membrane protein (DUF2157) UPRTase PF14681.6 gi|530547592|ref|YP_008428121.1| - 1.2e-52 178.4 0.1 1.4e-52 178.2 0.1 1.0 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Pribosyltran PF00156.27 gi|530547592|ref|YP_008428121.1| - 3.1e-10 39.8 0.7 4.4e-10 39.3 0.7 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain PRTase_2 PF15609.6 gi|530547592|ref|YP_008428121.1| - 0.043 13.3 0.0 0.063 12.8 0.0 1.5 1 1 0 1 1 1 0 Phosphoribosyl transferase AAA_lid_8 PF17868.1 gi|530547592|ref|YP_008428121.1| - 0.09 12.7 0.2 0.38 10.7 0.0 2.1 2 0 0 2 2 2 0 AAA lid domain HTH_24 PF13412.6 gi|530547593|ref|YP_008428122.1| - 1.5e-10 40.5 0.7 8.7e-10 38.0 0.1 2.4 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|530547593|ref|YP_008428122.1| - 6.7e-09 35.4 0.0 9.7e-08 31.7 0.0 2.3 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain AsnC_trans_reg PF01037.21 gi|530547593|ref|YP_008428122.1| - 3.5e-07 30.1 0.0 6.1e-07 29.3 0.0 1.5 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_11 PF08279.12 gi|530547593|ref|YP_008428122.1| - 6.9e-05 22.7 0.1 0.00023 21.1 0.1 1.9 1 0 0 1 1 1 1 HTH domain MarR PF01047.22 gi|530547593|ref|YP_008428122.1| - 7.3e-05 22.6 0.0 0.00014 21.7 0.0 1.5 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|530547593|ref|YP_008428122.1| - 0.00066 19.5 0.0 0.0015 18.4 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_Mga PF08280.11 gi|530547593|ref|YP_008428122.1| - 0.0033 17.4 0.0 0.01 15.8 0.0 1.8 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain Dcc1 PF09724.9 gi|530547593|ref|YP_008428122.1| - 0.0059 15.9 0.1 0.02 14.2 0.0 1.7 1 1 0 2 2 2 1 Sister chromatid cohesion protein Dcc1 HTH_IclR PF09339.10 gi|530547593|ref|YP_008428122.1| - 0.0084 15.9 0.0 0.19 11.6 0.0 2.4 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_20 PF12840.7 gi|530547593|ref|YP_008428122.1| - 0.02 14.9 0.0 0.067 13.3 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_36 PF13730.6 gi|530547593|ref|YP_008428122.1| - 0.023 14.6 0.1 0.049 13.6 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_34 PF13601.6 gi|530547593|ref|YP_008428122.1| - 0.062 13.5 0.0 0.12 12.5 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain TrmB PF01978.19 gi|530547593|ref|YP_008428122.1| - 0.08 12.8 0.1 0.21 11.5 0.0 1.8 2 0 0 2 2 1 0 Sugar-specific transcriptional regulator TrmB T_hemolysin PF12261.8 gi|530547593|ref|YP_008428122.1| - 0.1 12.4 0.1 0.12 12.2 0.1 1.2 1 0 0 1 1 1 0 Thermostable hemolysin FeoC PF09012.10 gi|530547593|ref|YP_008428122.1| - 0.14 12.3 0.0 0.31 11.1 0.0 1.5 1 0 0 1 1 1 0 FeoC like transcriptional regulator Fe_dep_repress PF01325.19 gi|530547593|ref|YP_008428122.1| - 0.24 11.6 1.0 0.64 10.3 0.0 2.2 3 0 0 3 3 3 0 Iron dependent repressor, N-terminal DNA binding domain Peptidase_M1 PF01433.20 gi|530547594|ref|YP_008428123.1| - 1.6e-10 40.9 2.7 1.9e-09 37.4 1.7 2.2 2 0 0 2 2 2 2 Peptidase family M1 domain SPASM PF13186.6 gi|530547595|ref|YP_008428124.1| - 0.036 14.6 0.7 0.18 12.4 0.2 2.4 2 1 0 2 2 2 0 Iron-sulfur cluster-binding domain NUP214 PF16755.5 gi|530547596|ref|YP_008428125.1| - 0.019 14.2 0.0 0.021 14.1 0.0 1.0 1 0 0 1 1 1 0 Nucleoporin or Nuclear pore complex subunit NUP214=Nup159 Radical_SAM PF04055.21 gi|530547597|ref|YP_008428126.1| - 0.037 14.4 1.8 0.088 13.2 0.4 2.2 1 1 1 2 2 2 0 Radical SAM superfamily DUF4434 PF14488.6 gi|530547597|ref|YP_008428126.1| - 0.051 13.6 0.2 0.87 9.6 0.1 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4434) GHL6 PF14871.6 gi|530547597|ref|YP_008428126.1| - 0.12 12.5 0.4 0.37 10.9 0.3 1.9 1 1 0 1 1 1 0 Hypothetical glycosyl hydrolase 6 Fer4_12 PF13353.6 gi|530547598|ref|YP_008428127.1| - 1.5e-09 38.2 0.1 2.7e-09 37.4 0.1 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|530547598|ref|YP_008428127.1| - 4.9e-09 36.4 0.0 7.7e-09 35.7 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Radical_SAM PF04055.21 gi|530547598|ref|YP_008428127.1| - 1.2e-06 29.0 0.2 1.9e-06 28.4 0.2 1.3 1 0 0 1 1 1 1 Radical SAM superfamily pXO2-72 PF17443.2 gi|530547598|ref|YP_008428127.1| - 0.0046 17.2 0.2 2.1 8.6 0.0 2.6 3 0 0 3 3 3 2 Uncharacterized protein pXO2-72 DUF4932 PF16286.5 gi|530547599|ref|YP_008428128.1| - 1.4e-19 70.6 14.2 5.8e-19 68.5 14.2 1.9 1 1 0 1 1 1 1 Domain of unknown function (DUF4932) S_layer_C PF05124.12 gi|530547599|ref|YP_008428128.1| - 5.8e-13 49.4 1.2 9.3e-12 45.4 0.1 2.8 2 1 0 2 2 2 1 S-layer like family, C-terminal region BcsB PF03170.13 gi|530547599|ref|YP_008428128.1| - 0.068 11.5 0.0 0.086 11.2 0.0 1.1 1 0 0 1 1 1 0 Bacterial cellulose synthase subunit Fer4_12 PF13353.6 gi|530547600|ref|YP_008428129.1| - 2.1e-15 57.2 0.4 5.2e-15 55.9 0.0 1.8 2 0 0 2 2 2 1 4Fe-4S single cluster domain Radical_SAM PF04055.21 gi|530547600|ref|YP_008428129.1| - 7e-11 42.8 0.4 2e-10 41.3 0.0 2.0 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|530547600|ref|YP_008428129.1| - 3.1e-09 37.0 2.1 3.7e-09 36.8 0.0 2.2 3 0 0 3 3 3 1 4Fe-4S single cluster domain SPASM PF13186.6 gi|530547600|ref|YP_008428129.1| - 0.024 15.1 2.4 0.07 13.6 0.3 2.8 3 0 0 3 3 3 0 Iron-sulfur cluster-binding domain ABC2_membrane PF01061.24 gi|530547602|ref|YP_008428131.1| - 8.7e-08 31.8 21.4 8.7e-08 31.8 21.4 2.1 2 0 0 2 2 2 1 ABC-2 type transporter SMC_ScpB PF04079.16 gi|530547603|ref|YP_008428132.1| - 6.2e-07 29.2 0.2 7.5e-07 28.9 0.2 1.1 1 0 0 1 1 1 1 Segregation and condensation complex subunit ScpB Penicillinase_R PF03965.16 gi|530547603|ref|YP_008428132.1| - 5.8e-06 26.6 0.6 1.4e-05 25.4 0.6 1.6 1 1 0 1 1 1 1 Penicillinase repressor HTH_24 PF13412.6 gi|530547603|ref|YP_008428132.1| - 1.4e-05 24.6 0.3 0.0031 17.0 0.0 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|530547603|ref|YP_008428132.1| - 4.3e-05 23.3 0.0 0.00012 21.8 0.0 1.7 1 1 0 1 1 1 1 MarR family MarR PF01047.22 gi|530547603|ref|YP_008428132.1| - 9.7e-05 22.2 0.1 0.00024 20.9 0.1 1.7 1 1 0 1 1 1 1 MarR family TrmB PF01978.19 gi|530547603|ref|YP_008428132.1| - 0.00023 21.0 0.2 0.00037 20.3 0.2 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Sigma70_r4 PF04545.16 gi|530547603|ref|YP_008428132.1| - 0.0011 18.5 0.2 0.0022 17.5 0.2 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_DeoR PF08220.12 gi|530547603|ref|YP_008428132.1| - 0.014 15.1 0.2 0.049 13.4 0.2 1.8 1 1 0 1 1 1 0 DeoR-like helix-turn-helix domain LexA_DNA_bind PF01726.16 gi|530547603|ref|YP_008428132.1| - 0.016 14.9 1.4 0.23 11.3 1.4 2.1 1 1 0 1 1 1 0 LexA DNA binding domain FtsK_gamma PF09397.10 gi|530547603|ref|YP_008428132.1| - 0.025 14.4 0.1 0.056 13.2 0.1 1.6 1 1 0 1 1 1 0 Ftsk gamma domain FaeA PF04703.12 gi|530547603|ref|YP_008428132.1| - 0.039 14.3 0.1 0.07 13.5 0.1 1.4 1 1 0 1 1 1 0 FaeA-like protein TBPIP PF07106.13 gi|530547603|ref|YP_008428132.1| - 0.039 13.9 2.6 0.085 12.8 2.2 1.7 1 1 1 2 2 2 0 TBPIP/Hop2 winged helix domain ArsR PF09824.9 gi|530547603|ref|YP_008428132.1| - 0.06 12.9 0.1 0.073 12.7 0.1 1.1 1 0 0 1 1 1 0 ArsR transcriptional regulator HTH_Crp_2 PF13545.6 gi|530547603|ref|YP_008428132.1| - 0.063 13.3 0.2 0.11 12.5 0.2 1.5 1 1 0 1 1 1 0 Crp-like helix-turn-helix domain SBDS PF01172.18 gi|530547603|ref|YP_008428132.1| - 0.069 13.2 1.4 0.19 11.8 0.2 2.0 1 1 1 2 2 2 0 Shwachman-Bodian-Diamond syndrome (SBDS) protein HTH_27 PF13463.6 gi|530547603|ref|YP_008428132.1| - 0.077 13.5 0.1 0.15 12.6 0.1 1.5 1 1 0 1 1 1 0 Winged helix DNA-binding domain HTH_38 PF13936.6 gi|530547603|ref|YP_008428132.1| - 0.086 12.6 0.0 0.2 11.5 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Peptidase_M1 PF01433.20 gi|530547604|ref|YP_008428133.1| - 2.1e-13 50.4 0.0 8.6e-13 48.4 0.0 2.0 1 1 0 1 1 1 1 Peptidase family M1 domain Radical_SAM PF04055.21 gi|530547605|ref|YP_008428134.1| - 8.4e-16 58.8 0.0 1.5e-15 58.0 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|530547605|ref|YP_008428134.1| - 7e-09 36.1 0.0 1.5e-08 35.0 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|530547605|ref|YP_008428134.1| - 2.9e-08 33.9 0.6 1.3e-07 31.8 0.1 2.2 2 0 0 2 2 2 1 4Fe-4S single cluster domain Peptidase_M1 PF01433.20 gi|530547606|ref|YP_008428135.1| - 1.4e-14 54.2 0.0 4.5e-14 52.5 0.0 1.8 1 1 0 1 1 1 1 Peptidase family M1 domain WLM PF08325.10 gi|530547606|ref|YP_008428135.1| - 0.029 14.4 0.1 0.051 13.6 0.1 1.3 1 0 0 1 1 1 0 WLM domain Nitroreductase PF00881.24 gi|530547607|ref|YP_008428136.1| - 5.4e-30 104.7 0.0 6.9e-30 104.3 0.0 1.1 1 0 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.6 gi|530547607|ref|YP_008428136.1| - 0.0048 16.5 0.3 2.5 7.6 0.0 2.4 2 0 0 2 2 2 2 Putative TM nitroreductase YcaO PF02624.16 gi|530547608|ref|YP_008428137.1| - 2e-59 201.5 0.0 2.3e-59 201.3 0.0 1.0 1 0 0 1 1 1 1 YcaO cyclodehydratase, ATP-ad Mg2+-binding Succ_CoA_lig PF13607.6 gi|530547608|ref|YP_008428137.1| - 0.14 12.0 0.0 0.27 11.0 0.0 1.4 1 0 0 1 1 1 0 Succinyl-CoA ligase like flavodoxin domain ThiF PF00899.21 gi|530547609|ref|YP_008428138.1| - 1.4e-21 77.0 0.0 1.9e-21 76.5 0.0 1.1 1 0 0 1 1 1 1 ThiF family Shikimate_DH PF01488.20 gi|530547609|ref|YP_008428138.1| - 1.2e-05 25.3 0.2 4.9e-05 23.4 0.0 2.0 2 1 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase 2-Hacid_dh_C PF02826.19 gi|530547609|ref|YP_008428138.1| - 0.015 14.6 0.0 0.026 13.9 0.0 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 gi|530547609|ref|YP_008428138.1| - 0.13 12.4 0.0 0.21 11.8 0.0 1.4 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase Epimerase_2 PF02350.19 gi|530547609|ref|YP_008428138.1| - 0.24 10.2 0.0 0.4 9.5 0.0 1.3 1 0 0 1 1 1 0 UDP-N-acetylglucosamine 2-epimerase DUF3681 PF12442.8 gi|530547610|ref|YP_008428139.1| - 0.75 10.3 8.6 0.26 11.8 2.2 2.7 1 1 1 2 2 2 0 Protein of unknown function (DUF3681) ABC_tran PF00005.27 gi|530547611|ref|YP_008428140.1| - 3.5e-21 76.2 0.1 4.8e-21 75.7 0.1 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|530547611|ref|YP_008428140.1| - 8.7e-13 48.7 6.8 3.1e-09 37.1 0.1 2.4 2 1 0 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|530547611|ref|YP_008428140.1| - 8.2e-05 22.1 2.3 0.0095 15.4 2.3 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|530547611|ref|YP_008428140.1| - 0.0097 15.6 0.1 0.02 14.6 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain SbcCD_C PF13558.6 gi|530547611|ref|YP_008428140.1| - 0.012 15.8 0.0 0.14 12.4 0.0 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit T2SSE PF00437.20 gi|530547611|ref|YP_008428140.1| - 0.016 14.3 0.1 0.024 13.7 0.1 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein RsgA_GTPase PF03193.16 gi|530547611|ref|YP_008428140.1| - 0.017 15.0 0.3 0.032 14.2 0.3 1.4 1 0 0 1 1 1 0 RsgA GTPase DUF3584 PF12128.8 gi|530547611|ref|YP_008428140.1| - 0.017 12.7 0.3 0.026 12.0 0.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) AAA_23 PF13476.6 gi|530547611|ref|YP_008428140.1| - 0.019 15.5 2.3 0.02 15.4 0.4 1.9 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.6 gi|530547611|ref|YP_008428140.1| - 0.085 13.1 0.1 0.16 12.3 0.1 1.4 1 1 0 1 1 1 0 AAA domain DLIC PF05783.11 gi|530547611|ref|YP_008428140.1| - 0.089 11.6 0.3 0.13 11.0 0.3 1.3 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) NACHT PF05729.12 gi|530547611|ref|YP_008428140.1| - 0.096 12.6 0.6 0.21 11.5 0.6 1.5 1 0 0 1 1 1 0 NACHT domain AAA_30 PF13604.6 gi|530547611|ref|YP_008428140.1| - 0.1 12.3 0.0 0.15 11.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_27 PF13514.6 gi|530547611|ref|YP_008428140.1| - 0.11 12.1 0.1 0.3 10.7 0.1 1.6 2 0 0 2 2 2 0 AAA domain TrwB_AAD_bind PF10412.9 gi|530547611|ref|YP_008428140.1| - 0.12 11.2 0.2 0.23 10.3 0.2 1.4 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_28 PF13521.6 gi|530547611|ref|YP_008428140.1| - 0.13 12.5 0.2 0.2 11.9 0.2 1.3 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|530547611|ref|YP_008428140.1| - 0.14 12.2 0.3 0.25 11.4 0.3 1.6 1 1 0 1 1 1 0 50S ribosome-binding GTPase Mg_chelatase PF01078.21 gi|530547611|ref|YP_008428140.1| - 0.18 11.2 0.0 0.27 10.6 0.0 1.2 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_18 PF13238.6 gi|530547611|ref|YP_008428140.1| - 0.31 11.6 1.9 1 9.9 1.9 2.1 1 1 0 1 1 1 0 AAA domain AAA_15 PF13175.6 gi|530547611|ref|YP_008428140.1| - 2.9 7.5 9.6 1.1 9.0 5.6 1.9 1 1 0 2 2 2 0 AAA ATPase domain ABC_tran PF00005.27 gi|530547613|ref|YP_008428142.1| - 5.1e-24 85.4 0.0 8.6e-24 84.6 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|530547613|ref|YP_008428142.1| - 2.5e-12 47.3 2.3 1.2e-08 35.1 0.1 2.3 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|530547613|ref|YP_008428142.1| - 0.01 16.6 0.5 0.064 14.0 0.2 2.3 2 0 0 2 2 2 1 Domain of unknown function (DUF4162) AAA_24 PF13479.6 gi|530547613|ref|YP_008428142.1| - 0.013 15.2 0.1 0.043 13.5 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_15 PF13175.6 gi|530547613|ref|YP_008428142.1| - 0.03 14.0 7.4 0.041 13.6 0.2 2.9 2 1 1 3 3 3 0 AAA ATPase domain IstB_IS21 PF01695.17 gi|530547613|ref|YP_008428142.1| - 0.033 13.9 0.0 1.2 8.9 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_29 PF13555.6 gi|530547613|ref|YP_008428142.1| - 0.11 12.2 0.0 0.22 11.3 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|530547613|ref|YP_008428142.1| - 0.28 11.7 7.1 2.7 8.4 7.1 2.3 1 1 0 1 1 1 0 AAA domain DUF63 PF01889.17 gi|530547614|ref|YP_008428143.1| - 1e-69 235.8 21.4 1.1e-69 235.6 21.4 1.0 1 0 0 1 1 1 1 Membrane protein of unknown function DUF63 Yip1 PF04893.17 gi|530547615|ref|YP_008428144.1| - 0.086 12.6 32.2 0.015 15.0 27.4 1.8 1 1 1 2 2 2 0 Yip1 domain Fusion_F0 PF13044.6 gi|530547615|ref|YP_008428144.1| - 0.57 8.8 6.7 0.6 8.7 6.7 1.1 1 0 0 1 1 1 0 Fusion glycoprotein F0, Isavirus DUF4112 PF13430.6 gi|530547615|ref|YP_008428144.1| - 0.74 10.1 13.8 0.04 14.2 7.0 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF4112) DUF373 PF04123.13 gi|530547615|ref|YP_008428144.1| - 1.7 8.0 14.8 1.9 7.8 14.8 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF373) DUF5305 PF17231.2 gi|530547616|ref|YP_008428145.1| - 5.8e-11 42.2 2.6 1.6e-10 40.8 2.6 1.7 1 1 0 1 1 1 1 Family of unknown function (DUF5305) DUF11 PF01345.18 gi|530547617|ref|YP_008428146.1| - 2e-05 24.8 0.1 5e-05 23.5 0.1 1.6 1 0 0 1 1 1 1 Domain of unknown function DUF11 DUF4139 PF13598.6 gi|530547617|ref|YP_008428146.1| - 0.01 15.6 0.0 0.018 14.8 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4139) Chlam_PMP PF02415.17 gi|530547617|ref|YP_008428146.1| - 0.78 10.3 7.7 3.4 8.3 0.2 3.4 3 0 0 3 3 3 0 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat Peptidase_S24 PF00717.23 gi|530547618|ref|YP_008428147.1| - 1.9e-11 43.8 0.1 3.8e-11 42.8 0.1 1.5 1 0 0 1 1 1 1 Peptidase S24-like Tlr3_TMD PF17968.1 gi|530547618|ref|YP_008428147.1| - 0.055 13.6 3.0 0.2 11.9 3.0 1.9 1 0 0 1 1 1 0 Toll-like receptor 3 trans-membrane domain DUF1102 PF06510.11 gi|530547619|ref|YP_008428148.1| - 1.7e-34 119.1 0.9 2.1e-34 118.7 0.9 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1102) DUF1102 PF06510.11 gi|530547620|ref|YP_008428149.1| - 2.1e-37 128.5 4.2 2.8e-35 121.6 4.2 2.1 1 1 0 1 1 1 1 Protein of unknown function (DUF1102) DUF1102 PF06510.11 gi|530547621|ref|YP_008428150.1| - 1.4e-35 122.6 2.2 2.1e-34 118.7 2.2 2.0 1 1 0 1 1 1 1 Protein of unknown function (DUF1102) SH3_15 PF18346.1 gi|530547621|ref|YP_008428150.1| - 0.17 12.2 0.1 0.36 11.2 0.1 1.5 1 0 0 1 1 1 0 Mind bomb SH3 repeat domain DUF4777 PF16007.5 gi|530547622|ref|YP_008428151.1| - 0.058 13.6 0.0 0.089 13.1 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4777) YwiC PF14256.6 gi|530547622|ref|YP_008428151.1| - 0.085 13.2 0.1 0.12 12.7 0.1 1.2 1 0 0 1 1 1 0 YwiC-like protein Codanin-1_C PF15296.6 gi|530547622|ref|YP_008428151.1| - 0.13 12.4 0.0 0.18 11.9 0.0 1.2 1 0 0 1 1 1 0 Codanin-1 C-terminus HTH_20 PF12840.7 gi|530547623|ref|YP_008428152.1| - 0.006 16.6 0.0 0.0079 16.2 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain Replic_Relax PF13814.6 gi|530547623|ref|YP_008428152.1| - 0.015 15.4 0.6 0.017 15.2 0.6 1.0 1 0 0 1 1 1 0 Replication-relaxation TrmB PF01978.19 gi|530547623|ref|YP_008428152.1| - 0.019 14.8 0.1 0.038 13.9 0.1 1.6 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Penicillinase_R PF03965.16 gi|530547623|ref|YP_008428152.1| - 0.027 14.8 0.0 0.027 14.8 0.0 1.0 1 0 0 1 1 1 0 Penicillinase repressor HTH_Tnp_Tc3_2 PF01498.18 gi|530547623|ref|YP_008428152.1| - 0.039 14.2 0.0 0.05 13.9 0.0 1.2 1 0 0 1 1 1 0 Transposase Arg_repressor PF01316.21 gi|530547623|ref|YP_008428152.1| - 0.039 13.7 0.6 0.085 12.6 0.6 1.7 1 1 0 1 1 1 0 Arginine repressor, DNA binding domain MarR PF01047.22 gi|530547623|ref|YP_008428152.1| - 0.055 13.4 0.1 0.15 12.0 0.1 1.7 1 1 0 1 1 1 0 MarR family Gag_p10 PF02337.17 gi|530547623|ref|YP_008428152.1| - 0.094 12.7 0.0 0.19 11.7 0.0 1.5 1 1 1 2 2 2 0 Retroviral GAG p10 protein HTH_11 PF08279.12 gi|530547623|ref|YP_008428152.1| - 0.099 12.6 0.3 0.3 11.1 0.3 1.8 1 1 0 1 1 1 0 HTH domain MarR_2 PF12802.7 gi|530547623|ref|YP_008428152.1| - 0.12 12.3 0.1 0.39 10.6 0.1 1.8 1 1 0 1 1 1 0 MarR family Lipoprotein_19 PF13617.6 gi|530547623|ref|YP_008428152.1| - 0.39 10.5 1.9 0.59 10.0 0.7 1.9 2 0 0 2 2 2 0 YnbE-like lipoprotein CbiQ PF02361.16 gi|530547625|ref|YP_008428154.1| - 9.5e-27 94.0 15.0 9.5e-27 94.0 15.0 1.4 1 1 0 1 1 1 1 Cobalt transport protein ABC_tran PF00005.27 gi|530547626|ref|YP_008428155.1| - 3.8e-31 108.4 0.0 5.6e-31 107.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|530547626|ref|YP_008428155.1| - 2e-11 43.8 0.0 7.9e-11 41.8 0.0 1.7 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|530547626|ref|YP_008428155.1| - 2e-10 41.0 1.1 0.00022 21.1 0.0 2.4 2 1 0 3 3 2 2 AAA domain, putative AbiEii toxin, Type IV TA system Mg_chelatase PF01078.21 gi|530547626|ref|YP_008428155.1| - 4.4e-05 23.0 0.0 6.5e-05 22.4 0.0 1.3 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_23 PF13476.6 gi|530547626|ref|YP_008428155.1| - 7.2e-05 23.4 0.0 0.00012 22.7 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|530547626|ref|YP_008428155.1| - 0.00016 21.5 0.0 0.00018 21.4 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain SRP54 PF00448.22 gi|530547626|ref|YP_008428155.1| - 0.00041 20.0 0.0 0.00086 19.0 0.0 1.5 2 0 0 2 2 1 1 SRP54-type protein, GTPase domain AAA_18 PF13238.6 gi|530547626|ref|YP_008428155.1| - 0.00069 20.2 0.1 0.0033 18.0 0.0 2.0 2 1 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|530547626|ref|YP_008428155.1| - 0.00075 19.9 0.0 0.0017 18.8 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|530547626|ref|YP_008428155.1| - 0.001 19.4 0.1 0.0024 18.2 0.1 1.9 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|530547626|ref|YP_008428155.1| - 0.0019 18.4 0.0 0.0038 17.4 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|530547626|ref|YP_008428155.1| - 0.0022 18.2 0.1 0.01 16.1 0.1 2.1 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|530547626|ref|YP_008428155.1| - 0.003 18.0 0.0 0.012 16.0 0.0 1.9 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) NACHT PF05729.12 gi|530547626|ref|YP_008428155.1| - 0.0031 17.5 0.1 0.011 15.6 0.1 2.0 2 0 0 2 2 2 1 NACHT domain NTPase_1 PF03266.15 gi|530547626|ref|YP_008428155.1| - 0.0035 17.3 0.7 0.022 14.7 0.7 2.1 1 1 0 1 1 1 1 NTPase IstB_IS21 PF01695.17 gi|530547626|ref|YP_008428155.1| - 0.0035 17.1 0.1 0.28 10.9 0.0 2.2 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_24 PF13479.6 gi|530547626|ref|YP_008428155.1| - 0.0035 17.1 0.1 0.02 14.6 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_14 PF13173.6 gi|530547626|ref|YP_008428155.1| - 0.004 17.2 0.0 0.15 12.1 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.6 gi|530547626|ref|YP_008428155.1| - 0.004 16.9 0.0 0.0074 16.0 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_30 PF13604.6 gi|530547626|ref|YP_008428155.1| - 0.0046 16.7 0.0 0.0069 16.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_5 PF07728.14 gi|530547626|ref|YP_008428155.1| - 0.0058 16.6 0.0 0.01 15.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) SbcCD_C PF13558.6 gi|530547626|ref|YP_008428155.1| - 0.0063 16.7 0.0 0.28 11.5 0.0 2.3 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit RsgA_GTPase PF03193.16 gi|530547626|ref|YP_008428155.1| - 0.0086 16.0 0.0 0.015 15.2 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase NB-ARC PF00931.22 gi|530547626|ref|YP_008428155.1| - 0.013 14.7 0.1 0.024 13.8 0.1 1.4 1 0 0 1 1 1 0 NB-ARC domain AAA_13 PF13166.6 gi|530547626|ref|YP_008428155.1| - 0.016 13.9 0.0 0.2 10.3 0.1 2.0 1 1 1 2 2 2 0 AAA domain ATPase_2 PF01637.18 gi|530547626|ref|YP_008428155.1| - 0.019 14.8 0.2 0.052 13.5 0.1 1.9 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea PduV-EutP PF10662.9 gi|530547626|ref|YP_008428155.1| - 0.042 13.6 0.0 0.069 12.9 0.0 1.3 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation Zeta_toxin PF06414.12 gi|530547626|ref|YP_008428155.1| - 0.046 13.0 0.0 0.099 11.9 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin APS_kinase PF01583.20 gi|530547626|ref|YP_008428155.1| - 0.06 13.2 0.0 0.13 12.1 0.0 1.5 1 0 0 1 1 1 0 Adenylylsulphate kinase TsaE PF02367.17 gi|530547626|ref|YP_008428155.1| - 0.061 13.3 0.1 0.12 12.4 0.1 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE cobW PF02492.19 gi|530547626|ref|YP_008428155.1| - 0.063 12.9 0.1 0.095 12.3 0.1 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain ssDBP_DBD PF18361.1 gi|530547626|ref|YP_008428155.1| - 0.063 13.4 0.2 0.23 11.6 0.1 1.9 2 0 0 2 2 2 0 Single stranded DNA-binding protein ss DNA binding domain AAA_25 PF13481.6 gi|530547626|ref|YP_008428155.1| - 0.077 12.6 0.1 0.25 10.9 0.0 1.8 2 1 0 2 2 2 0 AAA domain RNA_helicase PF00910.22 gi|530547626|ref|YP_008428155.1| - 0.09 13.2 0.0 0.16 12.4 0.0 1.4 1 0 0 1 1 1 0 RNA helicase DLIC PF05783.11 gi|530547626|ref|YP_008428155.1| - 0.15 10.9 0.0 0.19 10.5 0.0 1.1 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) MobB PF03205.14 gi|530547626|ref|YP_008428155.1| - 0.16 11.9 0.7 0.35 10.8 0.0 1.9 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B BPL_LplA_LipB PF03099.19 gi|530547627|ref|YP_008428156.1| - 4.7e-13 49.2 0.0 8.8e-13 48.3 0.0 1.4 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family HTH_11 PF08279.12 gi|530547627|ref|YP_008428156.1| - 2.1e-12 46.8 0.3 9.1e-12 44.7 0.1 2.2 3 0 0 3 3 3 1 HTH domain BPL_LplA_LipB_2 PF16917.5 gi|530547627|ref|YP_008428156.1| - 0.0022 17.5 0.0 0.0028 17.2 0.0 1.2 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family HTH_24 PF13412.6 gi|530547627|ref|YP_008428156.1| - 0.038 13.6 0.1 0.094 12.3 0.1 1.7 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Rrf2 PF02082.20 gi|530547627|ref|YP_008428156.1| - 0.13 12.6 0.0 0.29 11.5 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator BioY PF02632.14 gi|530547628|ref|YP_008428157.1| - 5.7e-40 136.5 14.2 7.9e-40 136.0 14.2 1.2 1 0 0 1 1 1 1 BioY family ECF_trnsprt PF12822.7 gi|530547628|ref|YP_008428157.1| - 0.00026 21.2 22.8 0.00047 20.3 22.9 1.4 1 1 0 1 1 1 1 ECF transporter, substrate-specific component Colicin_V PF02674.16 gi|530547628|ref|YP_008428157.1| - 0.014 15.4 13.8 0.21 11.6 13.8 2.2 1 1 0 1 1 1 0 Colicin V production protein NTP_transf_3 PF12804.7 gi|530547629|ref|YP_008428158.1| - 4.7e-06 27.0 0.0 6.6e-06 26.6 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain FANC_SAP PF18081.1 gi|530547629|ref|YP_008428158.1| - 0.076 13.2 0.1 0.29 11.3 0.0 1.9 2 0 0 2 2 2 0 Fanconi anemia-associated nuclease SAP domain Prok-JAB PF14464.6 gi|530547631|ref|YP_008428160.1| - 1.6e-10 40.8 0.0 2.1e-10 40.4 0.0 1.2 1 0 0 1 1 1 1 Prokaryotic homologs of the JAB domain HTH_5 PF01022.20 gi|530547632|ref|YP_008428161.1| - 9.5e-12 44.6 1.3 1.3e-11 44.2 0.1 1.9 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|530547632|ref|YP_008428161.1| - 6.1e-08 32.6 0.1 1.7e-07 31.2 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain ArsR PF09824.9 gi|530547632|ref|YP_008428161.1| - 0.014 15.0 0.1 0.033 13.8 0.1 1.8 1 1 0 1 1 1 0 ArsR transcriptional regulator SUKH_5 PF14567.6 gi|530547632|ref|YP_008428161.1| - 0.033 13.9 0.1 0.05 13.3 0.1 1.3 1 0 0 1 1 1 0 SMI1-KNR4 cell-wall HTH_38 PF13936.6 gi|530547632|ref|YP_008428161.1| - 0.036 13.8 0.0 0.12 12.2 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain MazG PF03819.17 gi|530547633|ref|YP_008428162.1| - 2e-13 50.3 0.4 2.7e-13 49.9 0.4 1.2 1 0 0 1 1 1 1 MazG nucleotide pyrophosphohydrolase domain dUTPase_2 PF08761.11 gi|530547633|ref|YP_008428162.1| - 0.0036 17.5 0.0 0.0041 17.3 0.0 1.1 1 0 0 1 1 1 1 dUTPase MazG-like PF12643.7 gi|530547633|ref|YP_008428162.1| - 0.0075 16.5 0.2 0.011 16.0 0.2 1.3 1 0 0 1 1 1 1 MazG-like family HTH_24 PF13412.6 gi|530547634|ref|YP_008428163.1| - 5e-14 51.6 2.2 9.6e-14 50.7 2.2 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|530547634|ref|YP_008428163.1| - 2.2e-11 43.4 0.8 3.5e-11 42.7 0.8 1.3 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|530547634|ref|YP_008428163.1| - 7e-10 38.7 0.1 1.1e-09 38.2 0.1 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain MarR_2 PF12802.7 gi|530547634|ref|YP_008428163.1| - 1.3e-05 25.0 0.1 2.1e-05 24.3 0.1 1.3 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 gi|530547634|ref|YP_008428163.1| - 1.3e-05 25.0 0.1 2.8e-05 23.9 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_11 PF08279.12 gi|530547634|ref|YP_008428163.1| - 2.4e-05 24.2 0.5 2.4e-05 24.2 0.5 2.3 3 0 0 3 3 2 1 HTH domain MarR PF01047.22 gi|530547634|ref|YP_008428163.1| - 2.9e-05 23.9 1.3 4.3e-05 23.4 0.5 1.6 2 0 0 2 2 1 1 MarR family HTH_23 PF13384.6 gi|530547634|ref|YP_008428163.1| - 0.00014 21.5 0.7 0.00025 20.7 0.7 1.4 1 0 0 1 1 1 1 Homeodomain-like domain Crp PF00325.20 gi|530547634|ref|YP_008428163.1| - 0.00024 20.7 0.4 0.00037 20.1 0.4 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, crp family TrmB PF01978.19 gi|530547634|ref|YP_008428163.1| - 0.00028 20.7 0.1 0.00065 19.5 0.1 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_28 PF13518.6 gi|530547634|ref|YP_008428163.1| - 0.00045 20.3 0.4 0.00071 19.6 0.4 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Mga PF08280.11 gi|530547634|ref|YP_008428163.1| - 0.00075 19.5 0.9 0.0016 18.4 0.9 1.6 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain Replic_Relax PF13814.6 gi|530547634|ref|YP_008428163.1| - 0.0025 17.9 0.0 0.0027 17.8 0.0 1.2 1 0 0 1 1 1 1 Replication-relaxation HTH_20 PF12840.7 gi|530547634|ref|YP_008428163.1| - 0.0029 17.7 0.0 0.0052 16.8 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_34 PF13601.6 gi|530547634|ref|YP_008428163.1| - 0.0086 16.2 0.3 0.026 14.7 0.1 1.9 2 0 0 2 2 1 1 Winged helix DNA-binding domain HTH_27 PF13463.6 gi|530547634|ref|YP_008428163.1| - 0.017 15.6 0.6 0.23 12.0 0.2 2.2 2 0 0 2 2 2 0 Winged helix DNA-binding domain HxlR PF01638.17 gi|530547634|ref|YP_008428163.1| - 0.018 14.9 0.4 0.09 12.6 0.1 2.0 2 0 0 2 2 2 0 HxlR-like helix-turn-helix Phage_rep_O PF04492.13 gi|530547634|ref|YP_008428163.1| - 0.018 15.6 0.0 0.045 14.3 0.0 1.6 1 0 0 1 1 1 0 Bacteriophage replication protein O GntR PF00392.21 gi|530547634|ref|YP_008428163.1| - 0.024 14.3 0.3 0.054 13.1 0.3 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family DUF2250 PF10007.9 gi|530547634|ref|YP_008428163.1| - 0.024 14.7 0.3 0.024 14.7 0.3 1.9 2 1 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_DeoR PF08220.12 gi|530547634|ref|YP_008428163.1| - 0.025 14.3 2.9 0.03 14.1 1.2 2.0 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain HTH_IclR PF09339.10 gi|530547634|ref|YP_008428163.1| - 0.025 14.4 0.1 0.045 13.6 0.1 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain Sigma70_r4 PF04545.16 gi|530547634|ref|YP_008428163.1| - 0.028 14.0 0.3 0.052 13.1 0.3 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 EF1_GNE PF00736.19 gi|530547634|ref|YP_008428163.1| - 0.032 14.4 1.8 0.062 13.5 1.8 1.5 1 0 0 1 1 1 0 EF-1 guanine nucleotide exchange domain Rrf2 PF02082.20 gi|530547634|ref|YP_008428163.1| - 0.036 14.4 0.2 0.077 13.4 0.2 1.5 1 0 0 1 1 1 0 Transcriptional regulator FAM180 PF15173.6 gi|530547634|ref|YP_008428163.1| - 0.052 13.5 0.0 0.09 12.8 0.0 1.4 1 0 0 1 1 1 0 FAM180 family ATR13 PF16829.5 gi|530547634|ref|YP_008428163.1| - 0.11 12.9 0.6 0.28 11.6 0.0 1.9 2 1 1 3 3 3 0 Avirulence protein ATR13, RxLR effector FeoC PF09012.10 gi|530547634|ref|YP_008428163.1| - 0.12 12.5 0.0 0.21 11.7 0.0 1.3 1 0 0 1 1 1 0 FeoC like transcriptional regulator CLZ PF16526.5 gi|530547634|ref|YP_008428163.1| - 0.4 11.1 5.0 2.2 8.7 2.3 2.5 2 0 0 2 2 2 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels XhlA PF10779.9 gi|530547634|ref|YP_008428163.1| - 1 9.6 5.1 4.2 7.7 0.6 2.8 2 1 1 3 3 3 0 Haemolysin XhlA PhoU PF01895.19 gi|530547634|ref|YP_008428163.1| - 1.1 9.7 5.7 2 8.9 1.3 2.4 2 1 0 2 2 2 0 PhoU domain Osmo_CC PF08946.10 gi|530547634|ref|YP_008428163.1| - 3.5 8.0 5.9 52 4.2 0.1 3.2 3 0 0 3 3 3 0 Osmosensory transporter coiled coil DUF92 PF01940.16 gi|530547635|ref|YP_008428164.1| - 5.2e-52 176.6 11.9 8.9e-52 175.9 11.9 1.3 1 1 0 1 1 1 1 Integral membrane protein DUF92 DUF2933 PF11666.8 gi|530547635|ref|YP_008428164.1| - 0.86 9.7 0.1 0.86 9.7 0.1 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF2933) ThrE PF06738.12 gi|530547635|ref|YP_008428164.1| - 1.2 8.5 17.0 0.23 10.8 2.9 3.1 3 0 0 3 3 3 0 Putative threonine/serine exporter PDGLE PF13190.6 gi|530547635|ref|YP_008428164.1| - 2.9 7.8 13.7 13 5.8 0.1 4.4 5 0 0 5 5 5 0 PDGLE domain SLATT_1 PF18181.1 gi|530547635|ref|YP_008428164.1| - 5.6 6.9 11.1 2.3 8.2 0.6 2.8 3 1 1 4 4 4 0 SMODS and SLOG-associating 2TM effector domain 1 SPOUT_MTase_2 PF14419.6 gi|530547636|ref|YP_008428165.1| - 1.1e-81 272.3 0.1 1.6e-81 271.8 0.1 1.2 1 0 0 1 1 1 1 AF2226-like SPOUT RNA Methylase fused to THUMP THUMP PF02926.17 gi|530547636|ref|YP_008428165.1| - 1.8e-27 96.2 0.9 4.4e-27 94.9 0.9 1.7 1 0 0 1 1 1 1 THUMP domain Methyltrn_RNA_4 PF09936.9 gi|530547636|ref|YP_008428165.1| - 0.0012 18.7 0.0 0.0044 16.9 0.0 1.8 2 0 0 2 2 2 1 SAM-dependent RNA methyltransferase SPOUT_MTase PF02590.17 gi|530547636|ref|YP_008428165.1| - 0.022 14.7 0.0 0.045 13.7 0.0 1.7 1 0 0 1 1 1 0 Predicted SPOUT methyltransferase SpoU_methylase PF00588.19 gi|530547636|ref|YP_008428165.1| - 0.11 12.7 0.0 4.3 7.5 0.0 2.3 1 1 0 1 1 1 0 SpoU rRNA Methylase family Ribosomal_S3Ae PF01015.18 gi|530547637|ref|YP_008428166.1| - 6.4e-70 234.8 2.3 7.3e-70 234.7 2.3 1.0 1 0 0 1 1 1 1 Ribosomal S3Ae family Intein_splicing PF14890.6 gi|530547637|ref|YP_008428166.1| - 0.19 11.7 1.3 4.9 7.1 0.5 2.3 1 1 1 2 2 2 0 Intein splicing domain DHHA1 PF02272.19 gi|530547639|ref|YP_008428168.1| - 2.2e-22 80.0 2.7 2.2e-22 80.0 2.7 2.8 2 2 1 3 3 3 1 DHHA1 domain DHH PF01368.20 gi|530547639|ref|YP_008428168.1| - 0.0035 17.5 0.0 0.0082 16.4 0.0 1.6 1 0 0 1 1 1 1 DHH family YqzH PF14164.6 gi|530547639|ref|YP_008428168.1| - 0.081 13.0 0.2 0.42 10.7 0.0 2.2 2 0 0 2 2 2 0 YqzH-like protein Ribosomal_S13_N PF08069.12 gi|530547640|ref|YP_008428169.1| - 4.7e-28 97.0 0.0 1.5e-27 95.4 0.0 1.8 2 0 0 2 2 2 1 Ribosomal S13/S15 N-terminal domain Ribosomal_S15 PF00312.22 gi|530547640|ref|YP_008428169.1| - 1e-18 67.3 0.5 1.4e-18 66.9 0.5 1.2 1 0 0 1 1 1 1 Ribosomal protein S15 DUF5340 PF17275.2 gi|530547640|ref|YP_008428169.1| - 0.0059 16.7 0.0 0.52 10.5 0.0 2.3 2 0 0 2 2 2 1 Family of unknown function (DUF5340) MerR_1 PF13411.6 gi|530547640|ref|YP_008428169.1| - 0.034 14.2 0.0 0.95 9.6 0.0 2.6 2 0 0 2 2 2 0 MerR HTH family regulatory protein RHH_6 PF16762.5 gi|530547641|ref|YP_008428170.1| - 0.00025 21.6 0.0 0.00027 21.5 0.0 1.0 1 0 0 1 1 1 1 Ribbon-helix-helix domain RHH_1 PF01402.21 gi|530547641|ref|YP_008428170.1| - 0.042 13.8 0.3 4.5 7.3 0.0 2.2 2 0 0 2 2 2 0 Ribbon-helix-helix protein, copG family RHH_5 PF07878.11 gi|530547641|ref|YP_008428170.1| - 0.15 12.0 0.4 0.41 10.6 0.1 1.7 2 0 0 2 2 2 0 CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5 OrfB_IS605 PF01385.19 gi|530547446|ref|YP_008428171.1| - 9.8e-30 103.2 0.0 1.9e-29 102.3 0.0 1.5 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.11 gi|530547446|ref|YP_008428171.1| - 3.7e-18 65.2 0.0 7.2e-18 64.3 0.0 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain RuvX PF03652.15 gi|530547446|ref|YP_008428171.1| - 0.0033 17.8 0.0 0.01 16.3 0.0 1.8 1 1 0 1 1 1 1 Holliday junction resolvase DUF2256 PF10013.9 gi|530547446|ref|YP_008428171.1| - 0.37 10.9 4.7 0.43 10.7 0.1 3.1 3 0 0 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2256) Rad50_zn_hook PF04423.14 gi|530547446|ref|YP_008428171.1| - 0.96 9.3 3.3 1.8 8.5 0.2 2.7 2 1 0 2 2 2 0 Rad50 zinc hook motif 2-Hacid_dh_C PF02826.19 gi|530547642|ref|YP_008428172.1| - 1.5e-71 239.4 0.0 2.1e-71 239.0 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|530547642|ref|YP_008428172.1| - 2.3e-40 137.3 0.0 2.7e-40 137.1 0.0 1.0 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.15 gi|530547642|ref|YP_008428172.1| - 1.5e-07 31.7 0.0 3.2e-07 30.6 0.0 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase IlvN PF07991.12 gi|530547642|ref|YP_008428172.1| - 8.1e-06 25.5 0.1 9.3e-05 22.1 0.0 2.2 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain F420_oxidored PF03807.17 gi|530547642|ref|YP_008428172.1| - 0.00022 21.7 0.0 0.0006 20.3 0.0 1.8 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_7 PF13241.6 gi|530547642|ref|YP_008428172.1| - 0.025 15.0 0.0 0.13 12.7 0.0 2.0 2 0 0 2 2 2 0 Putative NAD(P)-binding Aminotran_1_2 PF00155.21 gi|530547643|ref|YP_008428173.1| - 1.2e-43 149.7 0.0 1.4e-43 149.5 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_MocR PF12897.7 gi|530547643|ref|YP_008428173.1| - 5.3e-09 35.4 0.0 1.6e-08 33.7 0.0 2.1 1 1 0 1 1 1 1 Alanine-glyoxylate amino-transferase Beta_elim_lyase PF01212.21 gi|530547643|ref|YP_008428173.1| - 2.6e-06 27.0 0.0 4.2e-06 26.3 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.17 gi|530547643|ref|YP_008428173.1| - 1.7e-05 24.3 0.0 2.6e-05 23.7 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.20 gi|530547643|ref|YP_008428173.1| - 0.082 11.4 0.0 0.73 8.3 0.0 1.9 2 0 0 2 2 2 0 Cys/Met metabolism PLP-dependent enzyme DDE_Tnp_IS66 PF03050.14 gi|530547644|ref|YP_008428174.1| - 0.0041 16.6 0.0 0.0043 16.6 0.0 1.1 1 0 0 1 1 1 1 Transposase IS66 family DDE_Tnp_1_2 PF13586.6 gi|530547645|ref|YP_008428175.1| - 0.052 13.9 0.0 0.068 13.5 0.0 1.1 1 0 0 1 1 1 0 Transposase DDE domain DDE_Tnp_1 PF01609.21 gi|530547645|ref|YP_008428175.1| - 0.16 11.6 0.0 0.18 11.4 0.0 1.3 1 1 0 1 1 1 0 Transposase DDE domain Penicillinase_R PF03965.16 gi|530547646|ref|YP_008428176.1| - 3.9e-12 46.5 0.0 4.2e-12 46.4 0.0 1.0 1 0 0 1 1 1 1 Penicillinase repressor MarR_2 PF12802.7 gi|530547646|ref|YP_008428176.1| - 0.04 13.8 0.1 0.067 13.1 0.1 1.4 1 0 0 1 1 1 0 MarR family FUR PF01475.19 gi|530547646|ref|YP_008428176.1| - 0.052 13.7 0.0 0.059 13.5 0.0 1.1 1 0 0 1 1 1 0 Ferric uptake regulator family MarR PF01047.22 gi|530547646|ref|YP_008428176.1| - 0.058 13.3 0.1 0.08 12.9 0.1 1.2 1 0 0 1 1 1 0 MarR family PPR_2 PF13041.6 gi|530547646|ref|YP_008428176.1| - 0.11 12.7 0.1 0.16 12.2 0.1 1.2 1 0 0 1 1 1 0 PPR repeat family Penicillinase_R PF03965.16 gi|530547647|ref|YP_008428177.1| - 0.03 14.7 0.2 0.03 14.7 0.2 1.0 1 0 0 1 1 1 0 Penicillinase repressor Acetyltransf_9 PF13527.7 gi|530547647|ref|YP_008428177.1| - 0.043 13.9 0.0 0.045 13.8 0.0 1.0 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Peptidase_M48 PF01435.18 gi|530547648|ref|YP_008428178.1| - 1.3e-23 83.8 0.0 1.7e-23 83.4 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.11 gi|530547648|ref|YP_008428178.1| - 0.00029 20.1 0.2 0.0011 18.2 0.1 2.0 1 1 1 2 2 2 1 BlaR1 peptidase M56 AGTRAP PF06396.11 gi|530547648|ref|YP_008428178.1| - 0.044 13.6 0.2 0.085 12.7 0.2 1.5 1 0 0 1 1 1 0 Angiotensin II, type I receptor-associated protein (AGTRAP) Zn_peptidase_2 PF04298.12 gi|530547648|ref|YP_008428178.1| - 0.047 13.1 2.0 0.089 12.2 1.3 1.9 1 1 0 1 1 1 0 Putative neutral zinc metallopeptidase Tetraspanin PF00335.20 gi|530547648|ref|YP_008428178.1| - 0.5 10.0 3.7 5.3 6.7 0.4 2.3 2 0 0 2 2 2 0 Tetraspanin family Phage_holin_3_6 PF07332.11 gi|530547648|ref|YP_008428178.1| - 1.3 9.1 5.9 0.62 10.1 2.4 2.0 2 0 0 2 2 2 0 Putative Actinobacterial Holin-X, holin superfamily III dCMP_cyt_deam_1 PF00383.23 gi|530547447|ref|YP_008428179.1| - 9.7e-28 96.0 0.3 1.6e-27 95.3 0.3 1.4 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region MafB19-deam PF14437.6 gi|530547447|ref|YP_008428179.1| - 2e-20 73.0 0.1 2.5e-20 72.6 0.1 1.1 1 0 0 1 1 1 1 MafB19-like deaminase Bd3614-deam PF14439.6 gi|530547447|ref|YP_008428179.1| - 0.0059 16.7 0.1 0.011 15.8 0.1 1.5 1 1 0 1 1 1 1 Bd3614-like deaminase APOBEC3 PF18771.1 gi|530547447|ref|YP_008428179.1| - 0.034 14.3 0.1 0.06 13.5 0.1 1.5 1 1 0 1 1 1 0 APOBEC3 DUF2304 PF10066.9 gi|530547649|ref|YP_008428180.1| - 4.1e-23 81.6 5.7 4.7e-23 81.4 5.7 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2304) DUF948 PF06103.11 gi|530547649|ref|YP_008428180.1| - 0.062 13.6 0.1 0.062 13.6 0.1 2.2 3 0 0 3 3 3 0 Bacterial protein of unknown function (DUF948) DUF4199 PF13858.6 gi|530547649|ref|YP_008428180.1| - 0.12 12.8 3.8 0.68 10.3 3.8 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF4199) Glycos_transf_2 PF00535.26 gi|530547650|ref|YP_008428181.1| - 1.1e-26 93.7 0.1 1e-24 87.3 0.0 2.7 3 0 0 3 3 3 1 Glycosyl transferase family 2 HAD_2 PF13419.6 gi|530547650|ref|YP_008428181.1| - 1.3e-24 87.2 0.0 5.2e-24 85.3 0.0 2.0 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|530547650|ref|YP_008428181.1| - 2.8e-16 60.4 0.2 9e-14 52.3 0.1 2.7 2 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|530547650|ref|YP_008428181.1| - 4.3e-10 40.3 0.0 1.1e-09 39.0 0.0 1.7 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Glyco_tranf_2_3 PF13641.6 gi|530547650|ref|YP_008428181.1| - 3.2e-06 27.2 0.0 6.6e-06 26.2 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Hydrolase_like PF13242.6 gi|530547650|ref|YP_008428181.1| - 4.4e-06 26.7 0.0 1.4e-05 25.0 0.0 1.9 2 0 0 2 2 2 1 HAD-hyrolase-like Hydrolase_6 PF13344.6 gi|530547650|ref|YP_008428181.1| - 3.5e-05 23.8 0.0 0.00054 20.0 0.0 2.9 2 1 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Glyco_tranf_2_4 PF13704.6 gi|530547650|ref|YP_008428181.1| - 5.5e-05 23.6 0.0 0.00013 22.4 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferase family 2 Hydrolase_3 PF08282.12 gi|530547650|ref|YP_008428181.1| - 0.01 15.6 0.0 34 4.0 0.0 3.4 3 0 0 3 3 3 0 haloacid dehalogenase-like hydrolase NIF PF03031.18 gi|530547650|ref|YP_008428181.1| - 0.048 13.4 0.0 0.57 9.9 0.0 2.3 1 1 0 1 1 1 0 NLI interacting factor-like phosphatase Acid_PPase PF12689.7 gi|530547650|ref|YP_008428181.1| - 0.12 12.2 0.1 2.8 7.8 0.1 2.4 1 1 0 1 1 1 0 Acid Phosphatase PDZ_3 PF17815.1 gi|530547650|ref|YP_008428181.1| - 0.14 12.0 0.1 4.3 7.2 0.0 2.4 2 0 0 2 2 2 0 PDZ domain S6PP PF05116.13 gi|530547650|ref|YP_008428181.1| - 0.16 11.5 0.0 17 4.8 0.0 2.9 3 0 0 3 3 3 0 Sucrose-6F-phosphate phosphohydrolase Glycos_transf_4 PF00953.21 gi|530547651|ref|YP_008428182.1| - 2.1e-32 112.3 16.2 3.6e-32 111.5 16.2 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 4 Cas_Cas6 PF01881.16 gi|530547652|ref|YP_008428183.1| - 2e-32 112.7 1.1 2e-32 112.7 1.1 1.6 2 0 0 2 2 2 1 CRISPR associated protein Cas6 OrfB_IS605 PF01385.19 gi|530547448|ref|YP_008428184.1| - 6.6e-31 107.0 0.1 1.1e-30 106.3 0.1 1.4 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.11 gi|530547448|ref|YP_008428184.1| - 3.3e-21 75.0 0.0 6.1e-21 74.1 0.0 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain RuvX PF03652.15 gi|530547448|ref|YP_008428184.1| - 0.0023 18.3 0.0 0.0062 16.9 0.0 1.7 1 1 0 1 1 1 1 Holliday junction resolvase MAP65_ASE1 PF03999.12 gi|530547448|ref|YP_008428184.1| - 0.056 12.1 0.3 0.081 11.6 0.3 1.1 1 0 0 1 1 1 0 Microtubule associated protein (MAP65/ASE1 family) DDE_Tnp_IS66 PF03050.14 gi|530547653|ref|YP_008428185.1| - 0.0041 16.6 0.0 0.0043 16.6 0.0 1.1 1 0 0 1 1 1 1 Transposase IS66 family Sec61_beta PF03911.16 gi|530547655|ref|YP_008428187.1| - 1.1e-14 54.1 0.4 1.3e-14 54.0 0.4 1.1 1 0 0 1 1 1 1 Sec61beta family UPF0242 PF06785.11 gi|530547656|ref|YP_008428188.1| - 2.2e-05 24.7 4.2 3e-05 24.2 4.2 1.2 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0242) N-terminus GAS PF13851.6 gi|530547656|ref|YP_008428188.1| - 7.8e-05 22.1 12.6 9.8e-05 21.8 12.6 1.1 1 0 0 1 1 1 1 Growth-arrest specific micro-tubule binding CENP-H PF05837.12 gi|530547656|ref|YP_008428188.1| - 0.0011 19.4 6.8 0.0017 18.7 6.8 1.3 1 0 0 1 1 1 1 Centromere protein H (CENP-H) Phage_GP20 PF06810.11 gi|530547656|ref|YP_008428188.1| - 0.0022 17.8 11.4 0.049 13.4 2.2 2.2 1 1 1 2 2 2 2 Phage minor structural protein GP20 Baculo_PEP_C PF04513.12 gi|530547656|ref|YP_008428188.1| - 0.0051 16.9 0.8 0.01 15.9 0.8 1.5 1 1 0 1 1 1 1 Baculovirus polyhedron envelope protein, PEP, C terminus MbeD_MobD PF04899.12 gi|530547656|ref|YP_008428188.1| - 0.0061 16.7 0.1 0.017 15.3 0.1 1.7 1 0 0 1 1 1 1 MbeD/MobD like V_ATPase_I PF01496.19 gi|530547656|ref|YP_008428188.1| - 0.0069 14.4 0.7 0.0079 14.2 0.7 1.1 1 0 0 1 1 1 1 V-type ATPase 116kDa subunit family DUF3450 PF11932.8 gi|530547656|ref|YP_008428188.1| - 0.0087 15.4 5.3 0.016 14.5 5.3 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF3450) DUF724 PF05266.14 gi|530547656|ref|YP_008428188.1| - 0.017 15.0 5.6 0.027 14.3 5.6 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF724) TMF_TATA_bd PF12325.8 gi|530547656|ref|YP_008428188.1| - 0.018 15.3 13.9 0.028 14.6 13.9 1.2 1 0 0 1 1 1 0 TATA element modulatory factor 1 TATA binding HALZ PF02183.18 gi|530547656|ref|YP_008428188.1| - 0.018 15.3 8.4 2.1 8.7 2.6 4.0 3 1 0 3 3 3 0 Homeobox associated leucine zipper TPR_MLP1_2 PF07926.12 gi|530547656|ref|YP_008428188.1| - 0.029 14.4 10.8 0.29 11.2 2.9 2.6 2 1 0 2 2 2 0 TPR/MLP1/MLP2-like protein DHR10 PF18595.1 gi|530547656|ref|YP_008428188.1| - 0.032 14.3 14.0 0.033 14.2 12.8 1.5 1 1 0 1 1 1 0 Designed helical repeat protein 10 domain NAPRTase_N PF17767.1 gi|530547656|ref|YP_008428188.1| - 0.038 14.4 0.4 0.06 13.7 0.4 1.4 1 0 0 1 1 1 0 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain SHE3 PF17078.5 gi|530547656|ref|YP_008428188.1| - 0.043 13.5 11.1 0.092 12.5 11.1 1.5 1 1 0 1 1 1 0 SWI5-dependent HO expression protein 3 Cas_DxTHG PF09455.10 gi|530547656|ref|YP_008428188.1| - 0.052 13.1 5.5 0.072 12.7 5.5 1.1 1 0 0 1 1 1 0 CRISPR-associated (Cas) DxTHG family Rootletin PF15035.6 gi|530547656|ref|YP_008428188.1| - 0.063 13.3 4.3 0.1 12.6 3.9 1.6 1 1 0 1 1 1 0 Ciliary rootlet component, centrosome cohesion DivIC PF04977.15 gi|530547656|ref|YP_008428188.1| - 0.064 13.0 12.9 2.3 8.1 10.1 3.1 1 1 1 2 2 2 0 Septum formation initiator FTA4 PF13093.6 gi|530547656|ref|YP_008428188.1| - 0.067 13.1 5.3 0.17 11.7 5.5 1.4 1 1 0 1 1 1 0 Kinetochore complex Fta4 of Sim4 subunit, or CENP-50 PCRF PF03462.18 gi|530547656|ref|YP_008428188.1| - 0.083 12.7 6.3 0.066 13.1 5.0 1.5 2 0 0 2 2 1 0 PCRF domain TolA_bind_tri PF16331.5 gi|530547656|ref|YP_008428188.1| - 0.11 12.6 6.6 0.68 10.0 4.7 2.5 1 1 1 2 2 2 0 TolA binding protein trimerisation HMMR_N PF15905.5 gi|530547656|ref|YP_008428188.1| - 0.13 11.7 11.9 0.18 11.3 11.9 1.1 1 0 0 1 1 1 0 Hyaluronan mediated motility receptor N-terminal JIP_LZII PF16471.5 gi|530547656|ref|YP_008428188.1| - 0.14 12.4 12.0 0.76 10.0 5.9 2.8 1 1 1 2 2 2 0 JNK-interacting protein leucine zipper II Fmp27_WPPW PF10359.9 gi|530547656|ref|YP_008428188.1| - 0.14 11.0 3.9 0.21 10.4 3.9 1.3 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain LPP PF04728.13 gi|530547656|ref|YP_008428188.1| - 0.15 12.5 1.8 33 5.0 0.3 3.5 3 1 0 3 3 3 0 Lipoprotein leucine-zipper SlyX PF04102.12 gi|530547656|ref|YP_008428188.1| - 0.16 12.6 7.2 1.6 9.4 4.7 2.5 1 1 1 2 2 2 0 SlyX Sec20 PF03908.13 gi|530547656|ref|YP_008428188.1| - 0.16 11.9 1.5 0.29 11.1 1.5 1.5 1 0 0 1 1 1 0 Sec20 Prefoldin_2 PF01920.20 gi|530547656|ref|YP_008428188.1| - 0.17 11.9 12.4 0.49 10.4 2.9 2.4 2 0 0 2 2 2 0 Prefoldin subunit Spc7 PF08317.11 gi|530547656|ref|YP_008428188.1| - 0.2 10.5 12.4 0.26 10.1 12.4 1.1 1 0 0 1 1 1 0 Spc7 kinetochore protein DUF948 PF06103.11 gi|530547656|ref|YP_008428188.1| - 0.25 11.6 2.3 5 7.5 1.0 2.4 1 1 0 2 2 2 0 Bacterial protein of unknown function (DUF948) DUF1664 PF07889.12 gi|530547656|ref|YP_008428188.1| - 0.3 11.1 6.8 4.5 7.3 6.8 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF1664) Snapin_Pallidin PF14712.6 gi|530547656|ref|YP_008428188.1| - 0.48 10.9 8.4 12 6.4 8.4 2.3 1 1 0 1 1 1 0 Snapin/Pallidin FlaC_arch PF05377.11 gi|530547656|ref|YP_008428188.1| - 0.51 10.8 14.6 0.37 11.2 4.3 3.0 2 1 1 3 3 2 0 Flagella accessory protein C (FlaC) BLOC1_2 PF10046.9 gi|530547656|ref|YP_008428188.1| - 0.55 10.6 11.3 0.72 10.2 3.3 2.7 1 1 1 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Sec34 PF04136.15 gi|530547656|ref|YP_008428188.1| - 0.63 9.9 6.0 1.4 8.8 5.1 1.8 1 1 0 1 1 1 0 Sec34-like family USP8_interact PF08941.10 gi|530547656|ref|YP_008428188.1| - 0.64 9.8 4.2 0.59 9.9 0.5 2.0 1 1 1 2 2 2 0 USP8 interacting TMPIT PF07851.13 gi|530547656|ref|YP_008428188.1| - 0.66 9.2 4.8 0.87 8.8 4.8 1.2 1 0 0 1 1 1 0 TMPIT-like protein Csm1_N PF18504.1 gi|530547656|ref|YP_008428188.1| - 0.69 10.3 10.6 0.94 9.9 8.8 2.2 2 0 0 2 2 1 0 Csm1 N-terminal domain bZIP_1 PF00170.21 gi|530547656|ref|YP_008428188.1| - 0.75 9.9 10.3 0.6 10.3 5.8 2.8 1 1 1 2 2 2 0 bZIP transcription factor HAUS6_N PF14661.6 gi|530547656|ref|YP_008428188.1| - 0.81 9.2 5.5 1.4 8.4 5.5 1.4 1 1 0 1 1 1 0 HAUS augmin-like complex subunit 6 N-terminus Fzo_mitofusin PF04799.13 gi|530547656|ref|YP_008428188.1| - 0.92 9.0 7.1 1.3 8.6 5.7 1.8 1 1 1 2 2 2 0 fzo-like conserved region PRKG1_interact PF15898.5 gi|530547656|ref|YP_008428188.1| - 1 10.3 10.4 10 7.1 6.3 2.7 1 1 1 2 2 2 0 cGMP-dependent protein kinase interacting domain DUF2203 PF09969.9 gi|530547656|ref|YP_008428188.1| - 1.2 9.8 6.2 2.2 9.0 2.6 2.1 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2203) Geminin PF07412.12 gi|530547656|ref|YP_008428188.1| - 1.5 8.5 11.3 2.4 7.8 11.3 1.3 1 0 0 1 1 1 0 Geminin Ead_Ea22 PF13935.6 gi|530547656|ref|YP_008428188.1| - 1.5 9.5 9.1 4.5 7.9 9.1 1.7 1 1 0 1 1 1 0 Ead/Ea22-like protein Fib_alpha PF08702.10 gi|530547656|ref|YP_008428188.1| - 1.6 8.9 6.2 3.6 7.8 6.2 1.6 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family APG6_N PF17675.1 gi|530547656|ref|YP_008428188.1| - 1.9 9.0 14.1 4.7 7.8 14.1 1.6 1 1 0 1 1 1 0 Apg6 coiled-coil region ZapB PF06005.12 gi|530547656|ref|YP_008428188.1| - 2 8.9 14.7 9.5 6.7 14.8 2.1 1 1 0 1 1 1 0 Cell division protein ZapB Cep57_MT_bd PF06657.13 gi|530547656|ref|YP_008428188.1| - 2.1 8.9 14.2 2.6 8.6 0.8 3.6 1 1 3 4 4 4 0 Centrosome microtubule-binding domain of Cep57 NPV_P10 PF05531.12 gi|530547656|ref|YP_008428188.1| - 2.3 8.8 5.3 21 5.7 5.4 2.5 1 1 0 1 1 1 0 Nucleopolyhedrovirus P10 protein Wtap PF17098.5 gi|530547656|ref|YP_008428188.1| - 2.4 8.1 9.7 0.85 9.5 4.3 2.2 1 1 1 2 2 2 0 WTAP/Mum2p family CC2-LZ PF16516.5 gi|530547656|ref|YP_008428188.1| - 2.9 8.3 11.6 1.1 9.6 4.6 2.3 1 1 1 2 2 2 0 Leucine zipper of domain CC2 of NEMO, NF-kappa-B essential modulator Rx_N PF18052.1 gi|530547656|ref|YP_008428188.1| - 3 8.2 9.9 3.1 8.1 0.1 3.0 1 1 2 3 3 3 0 Rx N-terminal domain ATG16 PF08614.11 gi|530547656|ref|YP_008428188.1| - 3.3 7.9 12.0 6.6 6.9 12.0 1.6 1 1 0 1 1 1 0 Autophagy protein 16 (ATG16) zf-C4H2 PF10146.9 gi|530547656|ref|YP_008428188.1| - 3.9 7.7 11.8 5.8 7.2 11.8 1.2 1 0 0 1 1 1 0 Zinc finger-containing protein DUF848 PF05852.11 gi|530547656|ref|YP_008428188.1| - 5.2 7.2 9.5 7.9 6.6 7.4 2.0 1 1 1 2 2 2 0 Gammaherpesvirus protein of unknown function (DUF848) YabA PF06156.13 gi|530547656|ref|YP_008428188.1| - 7.5 7.2 10.5 15 6.3 9.0 2.1 1 1 1 2 2 2 0 Initiation control protein YabA DUF4795 PF16043.5 gi|530547656|ref|YP_008428188.1| - 8.4 5.9 12.4 57 3.2 12.4 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF4795) MMR_HSR1 PF01926.23 gi|530547657|ref|YP_008428189.1| - 3.6e-18 65.7 0.0 5.5e-18 65.1 0.0 1.3 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|530547657|ref|YP_008428189.1| - 5.3e-12 45.5 0.2 5.1e-11 42.3 0.2 2.1 1 1 0 1 1 1 1 Ferrous iron transport protein B GTP_EFTU PF00009.27 gi|530547657|ref|YP_008428189.1| - 1.7e-08 34.3 0.1 1.2e-06 28.2 0.0 2.2 2 0 0 2 2 2 1 Elongation factor Tu GTP binding domain RsgA_GTPase PF03193.16 gi|530547657|ref|YP_008428189.1| - 9.1e-06 25.7 1.7 0.018 15.0 0.3 2.9 2 1 0 2 2 2 2 RsgA GTPase Ras PF00071.22 gi|530547657|ref|YP_008428189.1| - 0.00084 19.0 0.5 0.2 11.3 0.0 2.2 2 0 0 2 2 2 2 Ras family MeaB PF03308.16 gi|530547657|ref|YP_008428189.1| - 0.0013 17.8 0.6 0.38 9.7 0.2 2.2 2 0 0 2 2 2 2 Methylmalonyl Co-A mutase-associated GTPase MeaB Dynamin_N PF00350.23 gi|530547657|ref|YP_008428189.1| - 0.0019 18.3 1.2 0.032 14.3 0.0 2.4 2 1 1 3 3 3 1 Dynamin family MMR_HSR1_Xtn PF16897.5 gi|530547657|ref|YP_008428189.1| - 0.004 17.2 0.1 0.0074 16.3 0.1 1.4 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain Roc PF08477.13 gi|530547657|ref|YP_008428189.1| - 0.0096 16.1 0.4 0.071 13.3 0.0 2.3 2 1 0 2 2 2 1 Ras of Complex, Roc, domain of DAPkinase MobB PF03205.14 gi|530547657|ref|YP_008428189.1| - 0.014 15.3 0.1 0.027 14.3 0.1 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AIG1 PF04548.16 gi|530547657|ref|YP_008428189.1| - 0.024 14.0 0.0 0.039 13.3 0.0 1.3 1 0 0 1 1 1 0 AIG1 family SRPRB PF09439.10 gi|530547657|ref|YP_008428189.1| - 0.045 13.2 0.1 0.11 11.9 0.1 1.9 1 1 0 1 1 1 0 Signal recognition particle receptor beta subunit DUF5595 PF18077.1 gi|530547657|ref|YP_008428189.1| - 0.049 13.7 0.1 0.14 12.3 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF5595) S6PP_C PF08472.10 gi|530547657|ref|YP_008428189.1| - 0.071 13.0 0.0 0.11 12.4 0.0 1.3 1 0 0 1 1 1 0 Sucrose-6-phosphate phosphohydrolase C-terminal ILEI PF15711.5 gi|530547657|ref|YP_008428189.1| - 0.076 13.5 0.0 0.13 12.8 0.0 1.5 1 0 0 1 1 1 0 Interleukin-like EMT inducer PduV-EutP PF10662.9 gi|530547657|ref|YP_008428189.1| - 0.086 12.6 0.1 0.69 9.7 0.0 2.1 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation ATP_bind_1 PF03029.17 gi|530547657|ref|YP_008428189.1| - 0.086 12.6 0.8 1.4 8.7 0.1 2.6 2 1 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA_22 PF13401.6 gi|530547657|ref|YP_008428189.1| - 0.094 13.0 0.3 1.5 9.1 0.2 2.6 2 1 0 2 2 2 0 AAA domain Diphtheria_C PF02763.14 gi|530547657|ref|YP_008428189.1| - 0.18 11.4 0.0 0.32 10.6 0.0 1.4 1 0 0 1 1 1 0 Diphtheria toxin, C domain HTH_Crp_2 PF13545.6 gi|530547658|ref|YP_008428190.1| - 1.7e-09 37.5 0.6 2.4e-08 33.8 0.1 2.3 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain AsnC_trans_reg PF01037.21 gi|530547658|ref|YP_008428190.1| - 1.6e-08 34.4 0.6 3.5e-08 33.3 0.6 1.6 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain MarR_2 PF12802.7 gi|530547658|ref|YP_008428190.1| - 2.3e-08 33.8 0.0 6.3e-08 32.4 0.0 1.7 2 0 0 2 2 2 1 MarR family HTH_24 PF13412.6 gi|530547658|ref|YP_008428190.1| - 1.5e-07 30.9 0.1 4.1e-07 29.5 0.1 1.8 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|530547658|ref|YP_008428190.1| - 3.3e-07 30.1 0.1 1.7e-06 27.8 0.0 2.1 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_11 PF08279.12 gi|530547658|ref|YP_008428190.1| - 3.8e-07 29.9 1.8 1.8e-06 27.8 0.2 2.7 2 1 0 2 2 2 1 HTH domain HTH_20 PF12840.7 gi|530547658|ref|YP_008428190.1| - 2.1e-06 27.7 0.1 6e-06 26.2 0.1 1.9 2 1 0 2 2 1 1 Helix-turn-helix domain LexA_DNA_bind PF01726.16 gi|530547658|ref|YP_008428190.1| - 3.3e-05 23.6 0.1 7.8e-05 22.4 0.1 1.7 1 0 0 1 1 1 1 LexA DNA binding domain MarR PF01047.22 gi|530547658|ref|YP_008428190.1| - 3.6e-05 23.6 0.4 9.6e-05 22.2 0.4 1.7 1 1 0 1 1 1 1 MarR family HTH_10 PF04967.12 gi|530547658|ref|YP_008428190.1| - 5e-05 23.0 1.7 0.0031 17.3 0.1 2.7 3 0 0 3 3 2 1 HTH DNA binding domain TrmB PF01978.19 gi|530547658|ref|YP_008428190.1| - 0.00016 21.5 0.4 0.0083 16.0 0.0 2.8 2 1 1 3 3 3 1 Sugar-specific transcriptional regulator TrmB HTH_28 PF13518.6 gi|530547658|ref|YP_008428190.1| - 0.00022 21.3 0.3 0.015 15.4 0.0 3.2 3 1 1 4 4 3 1 Helix-turn-helix domain Sigma70_r4 PF04545.16 gi|530547658|ref|YP_008428190.1| - 0.00029 20.3 0.3 0.0017 17.8 0.3 2.4 1 1 0 1 1 1 1 Sigma-70, region 4 Rrf2 PF02082.20 gi|530547658|ref|YP_008428190.1| - 0.00031 21.1 0.3 0.001 19.4 0.1 2.0 2 0 0 2 2 2 1 Transcriptional regulator HTH_36 PF13730.6 gi|530547658|ref|YP_008428190.1| - 0.00055 19.8 1.4 0.0035 17.3 0.1 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_34 PF13601.6 gi|530547658|ref|YP_008428190.1| - 0.001 19.2 0.0 0.0022 18.1 0.0 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain UPF0122 PF04297.14 gi|530547658|ref|YP_008428190.1| - 0.0014 18.8 2.7 0.067 13.4 0.1 2.8 2 2 0 2 2 2 1 Putative helix-turn-helix protein, YlxM / p13 like HTH_IclR PF09339.10 gi|530547658|ref|YP_008428190.1| - 0.0017 18.1 0.1 0.0047 16.7 0.1 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_23 PF13384.6 gi|530547658|ref|YP_008428190.1| - 0.0033 17.2 0.2 0.013 15.3 0.0 2.1 2 1 0 2 2 1 1 Homeodomain-like domain HTH_27 PF13463.6 gi|530547658|ref|YP_008428190.1| - 0.0037 17.7 0.2 0.0091 16.5 0.2 1.8 1 1 0 1 1 1 1 Winged helix DNA-binding domain TxDE PF18711.1 gi|530547658|ref|YP_008428190.1| - 0.0076 16.3 0.0 0.02 15.0 0.0 1.8 1 0 0 1 1 1 1 Toxoflavin-degrading enzyme HTH_Mga PF08280.11 gi|530547658|ref|YP_008428190.1| - 0.0099 15.9 1.1 0.0099 15.9 1.1 2.0 2 1 0 2 2 1 1 M protein trans-acting positive regulator (MGA) HTH domain HTH_3 PF01381.22 gi|530547658|ref|YP_008428190.1| - 0.014 15.5 0.0 0.039 14.0 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix HTH_40 PF14493.6 gi|530547658|ref|YP_008428190.1| - 0.022 15.2 2.0 0.099 13.1 2.0 2.3 1 1 0 1 1 1 0 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|530547658|ref|YP_008428190.1| - 0.023 14.4 0.1 0.082 12.6 0.0 2.0 2 0 0 2 2 1 0 Sigma-70, region 4 HTH_1 PF00126.27 gi|530547658|ref|YP_008428190.1| - 0.029 14.3 0.3 0.24 11.4 0.1 2.6 3 1 0 3 3 2 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_38 PF13936.6 gi|530547658|ref|YP_008428190.1| - 0.029 14.1 0.1 0.14 11.9 0.1 2.1 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_CodY PF08222.11 gi|530547658|ref|YP_008428190.1| - 0.034 13.7 0.0 0.083 12.5 0.0 1.6 1 0 0 1 1 1 0 CodY helix-turn-helix domain KORA PF16509.5 gi|530547658|ref|YP_008428190.1| - 0.036 14.4 0.0 0.093 13.0 0.0 1.8 1 0 0 1 1 1 0 TrfB plasmid transcriptional repressor ssDNA-exonuc_C PF10141.9 gi|530547658|ref|YP_008428190.1| - 0.037 13.7 0.0 0.096 12.3 0.0 1.6 2 0 0 2 2 2 0 Single-strand DNA-specific exonuclease, C terminal domain KorB PF08535.10 gi|530547658|ref|YP_008428190.1| - 0.037 14.1 0.1 0.29 11.2 0.0 2.3 2 1 1 3 3 3 0 KorB domain RepL PF05732.11 gi|530547658|ref|YP_008428190.1| - 0.047 13.1 0.1 0.073 12.5 0.0 1.4 1 1 0 1 1 1 0 Firmicute plasmid replication protein (RepL) Mrr_N PF14338.6 gi|530547658|ref|YP_008428190.1| - 0.063 13.4 2.6 8.4 6.6 0.0 3.0 2 1 1 3 3 3 0 Mrr N-terminal domain Homeodomain PF00046.29 gi|530547658|ref|YP_008428190.1| - 0.068 13.0 0.2 0.16 11.9 0.2 1.7 1 0 0 1 1 1 0 Homeodomain HTH_8 PF02954.19 gi|530547658|ref|YP_008428190.1| - 0.071 12.9 0.0 0.17 11.7 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family NapD PF03927.13 gi|530547658|ref|YP_008428190.1| - 0.091 12.8 0.7 0.45 10.6 0.1 2.2 2 1 0 2 2 2 0 NapD protein HTH_29 PF13551.6 gi|530547658|ref|YP_008428190.1| - 0.096 12.7 0.1 0.35 10.9 0.0 1.9 2 0 0 2 2 2 0 Winged helix-turn helix GerE PF00196.19 gi|530547658|ref|YP_008428190.1| - 0.11 12.0 3.6 0.62 9.7 0.8 2.8 2 1 0 2 2 2 0 Bacterial regulatory proteins, luxR family HTH_7 PF02796.15 gi|530547658|ref|YP_008428190.1| - 0.14 12.2 1.1 2.1 8.5 0.1 2.6 2 1 0 2 2 1 0 Helix-turn-helix domain of resolvase CLP1_P PF16575.5 gi|530547659|ref|YP_008428191.1| - 5.3e-43 147.0 0.0 7.4e-43 146.5 0.0 1.2 1 0 0 1 1 1 1 mRNA cleavage and polyadenylation factor CLP1 P-loop SRP54 PF00448.22 gi|530547659|ref|YP_008428191.1| - 7.3e-05 22.5 0.2 0.3 10.7 0.1 2.3 2 0 0 2 2 2 2 SRP54-type protein, GTPase domain CbiA PF01656.23 gi|530547659|ref|YP_008428191.1| - 8.5e-05 22.6 0.0 0.00013 22.0 0.0 1.7 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MipZ PF09140.11 gi|530547659|ref|YP_008428191.1| - 0.0006 19.2 0.5 0.0077 15.5 0.2 2.5 2 1 0 2 2 2 1 ATPase MipZ ParA PF10609.9 gi|530547659|ref|YP_008428191.1| - 0.00083 18.9 0.1 0.0013 18.3 0.1 1.3 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase AAA_31 PF13614.6 gi|530547659|ref|YP_008428191.1| - 0.0043 17.0 0.1 0.021 14.7 0.1 2.0 2 0 0 2 2 2 1 AAA domain MobB PF03205.14 gi|530547659|ref|YP_008428191.1| - 0.0072 16.2 0.0 0.017 15.0 0.0 1.6 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B MMR_HSR1 PF01926.23 gi|530547659|ref|YP_008428191.1| - 0.012 15.7 0.2 1.4 9.0 0.0 2.5 2 0 0 2 2 2 0 50S ribosome-binding GTPase PduV-EutP PF10662.9 gi|530547659|ref|YP_008428191.1| - 0.022 14.5 0.0 0.043 13.5 0.0 1.4 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation DUF87 PF01935.17 gi|530547659|ref|YP_008428191.1| - 0.023 14.8 2.7 2.2 8.3 1.6 2.5 2 1 0 2 2 2 0 Helicase HerA, central domain G-alpha PF00503.20 gi|530547659|ref|YP_008428191.1| - 0.043 13.0 0.2 0.12 11.5 0.0 1.7 2 0 0 2 2 2 0 G-protein alpha subunit Arf PF00025.21 gi|530547659|ref|YP_008428191.1| - 0.053 13.0 0.2 0.49 9.8 0.1 2.3 2 0 0 2 2 2 0 ADP-ribosylation factor family LpxK PF02606.14 gi|530547659|ref|YP_008428191.1| - 0.074 12.1 0.0 0.18 10.9 0.0 1.6 2 0 0 2 2 2 0 Tetraacyldisaccharide-1-P 4'-kinase GTP_EFTU PF00009.27 gi|530547659|ref|YP_008428191.1| - 0.078 12.5 0.7 0.17 11.4 0.0 1.9 2 1 1 3 3 3 0 Elongation factor Tu GTP binding domain APS_kinase PF01583.20 gi|530547659|ref|YP_008428191.1| - 0.086 12.7 0.0 0.16 11.9 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase cobW PF02492.19 gi|530547659|ref|YP_008428191.1| - 0.1 12.2 0.4 0.96 9.0 0.4 2.2 1 1 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain T2SSE PF00437.20 gi|530547659|ref|YP_008428191.1| - 0.1 11.6 0.0 0.22 10.6 0.0 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein UbiA PF01040.18 gi|530547660|ref|YP_008428192.1| - 6.9e-45 153.3 12.7 6.9e-45 153.3 12.7 1.3 1 1 0 1 1 1 1 UbiA prenyltransferase family Nicastrin PF05450.15 gi|530547660|ref|YP_008428192.1| - 0.21 11.0 0.0 0.3 10.5 0.0 1.1 1 0 0 1 1 1 0 Nicastrin DUF3040 PF11239.8 gi|530547660|ref|YP_008428192.1| - 1.6 9.1 0.0 1.6 9.1 0.0 3.9 5 0 0 5 5 5 0 Protein of unknown function (DUF3040) tRNA_anti-codon PF01336.25 gi|530547662|ref|YP_008428194.1| - 1.8e-07 31.0 1.1 3.8e-07 30.0 1.1 1.6 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain RPA_C PF08784.11 gi|530547662|ref|YP_008428194.1| - 0.0038 17.9 0.0 0.0061 17.2 0.0 1.4 1 0 0 1 1 1 1 Replication protein A C terminal RMI2 PF16100.5 gi|530547662|ref|YP_008428194.1| - 0.0088 15.9 0.0 0.016 15.0 0.0 1.4 1 0 0 1 1 1 1 RecQ-mediated genome instability protein 2 PriC PF07445.12 gi|530547662|ref|YP_008428194.1| - 0.031 14.2 0.5 0.05 13.5 0.2 1.4 2 0 0 2 2 2 0 Primosomal replication protein priC Hrs_helical PF12210.8 gi|530547662|ref|YP_008428194.1| - 0.057 14.0 0.7 0.34 11.5 0.0 2.4 2 1 0 2 2 2 0 Hepatocyte growth factor-regulated tyrosine kinase substrate DUF2096 PF09869.9 gi|530547662|ref|YP_008428194.1| - 0.065 13.3 3.2 0.44 10.6 0.8 2.7 1 1 2 3 3 3 0 Uncharacterized protein conserved in archaea (DUF2096) tRNA_anti-like PF12869.7 gi|530547662|ref|YP_008428194.1| - 0.12 12.0 0.4 0.31 10.6 0.1 1.8 2 0 0 2 2 2 0 tRNA_anti-like Rep_fac-A_3 PF08661.11 gi|530547663|ref|YP_008428195.1| - 6.8e-05 23.2 0.1 8.4e-05 22.9 0.1 1.1 1 0 0 1 1 1 1 Replication factor A protein 3 BOF PF04076.13 gi|530547663|ref|YP_008428195.1| - 0.00025 21.0 1.1 0.00047 20.2 1.1 1.4 1 1 0 1 1 1 1 Bacterial OB fold (BOF) protein RMI2 PF16100.5 gi|530547663|ref|YP_008428195.1| - 0.0017 18.2 0.1 0.002 17.9 0.1 1.2 1 0 0 1 1 1 1 RecQ-mediated genome instability protein 2 tRNA_anti-codon PF01336.25 gi|530547663|ref|YP_008428195.1| - 0.068 13.2 2.2 0.17 11.9 2.2 1.9 1 1 0 1 1 1 0 OB-fold nucleic acid binding domain tRNA_anti-codon PF01336.25 gi|530547664|ref|YP_008428196.1| - 5.3e-15 55.2 0.4 1e-10 41.4 0.1 2.9 2 1 0 2 2 2 2 OB-fold nucleic acid binding domain Rep_fac-A_C PF08646.10 gi|530547664|ref|YP_008428196.1| - 8.4e-10 38.6 0.0 1.5e-09 37.7 0.0 1.5 1 0 0 1 1 1 1 Replication factor-A C terminal domain CDC24_OB3 PF17244.2 gi|530547664|ref|YP_008428196.1| - 7.6e-06 25.8 0.0 3e-05 23.9 0.0 1.8 2 0 0 2 2 2 1 Cell division control protein 24, OB domain 3 DUF2240 PF09999.9 gi|530547664|ref|YP_008428196.1| - 0.0015 18.2 0.7 0.0015 18.2 0.7 1.7 2 0 0 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2240) SPAM PF02090.15 gi|530547664|ref|YP_008428196.1| - 0.0022 17.8 2.3 0.0062 16.4 0.1 2.1 2 0 0 2 2 2 1 Salmonella surface presentation of antigen gene type M protein DUF4777 PF16007.5 gi|530547664|ref|YP_008428196.1| - 0.015 15.6 0.8 0.12 12.7 0.4 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4777) REPA_OB_2 PF16900.5 gi|530547664|ref|YP_008428196.1| - 0.016 15.1 0.0 0.66 9.9 0.0 2.4 2 0 0 2 2 2 0 Replication protein A OB domain DUF5521 PF17659.1 gi|530547664|ref|YP_008428196.1| - 0.025 12.5 0.0 0.033 12.1 0.0 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5521) SMC_ScpB PF04079.16 gi|530547665|ref|YP_008428197.1| - 1e-35 122.8 3.2 1.8e-35 121.9 1.1 1.9 1 1 1 2 2 2 1 Segregation and condensation complex subunit ScpB HTH_27 PF13463.6 gi|530547665|ref|YP_008428197.1| - 0.018 15.5 0.5 1.7 9.2 0.1 2.5 2 0 0 2 2 2 0 Winged helix DNA-binding domain TrmB PF01978.19 gi|530547665|ref|YP_008428197.1| - 0.03 14.2 0.6 0.18 11.7 0.0 2.3 2 1 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|530547665|ref|YP_008428197.1| - 0.042 13.4 0.1 3.4 7.3 0.1 2.5 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|530547665|ref|YP_008428197.1| - 0.061 13.2 0.2 3 7.8 0.1 2.5 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family MarR PF01047.22 gi|530547665|ref|YP_008428197.1| - 0.11 12.5 0.7 1.6 8.7 0.3 2.7 2 1 0 2 2 2 0 MarR family HTH_20 PF12840.7 gi|530547665|ref|YP_008428197.1| - 0.12 12.4 0.1 2.9 8.0 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain ABM PF03992.16 gi|530547666|ref|YP_008428198.1| - 0.0003 20.9 0.1 0.00041 20.4 0.1 1.2 1 0 0 1 1 1 1 Antibiotic biosynthesis monooxygenase HTH_50 PF18024.1 gi|530547666|ref|YP_008428198.1| - 0.13 11.9 0.0 0.36 10.5 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain TPR_12 PF13424.6 gi|530547667|ref|YP_008428199.1| - 2.5e-16 59.7 3.7 0.0029 17.9 0.0 5.5 5 0 0 5 5 5 3 Tetratricopeptide repeat TPR_1 PF00515.28 gi|530547667|ref|YP_008428199.1| - 4.7e-13 48.3 6.3 0.00065 19.4 0.0 6.1 5 1 0 6 6 6 3 Tetratricopeptide repeat TPR_2 PF07719.17 gi|530547667|ref|YP_008428199.1| - 5.7e-13 47.9 10.3 0.003 17.6 0.3 6.4 5 1 0 6 6 5 3 Tetratricopeptide repeat TPR_8 PF13181.6 gi|530547667|ref|YP_008428199.1| - 6.8e-10 38.4 9.0 0.04 14.1 0.2 5.6 5 0 0 5 5 4 3 Tetratricopeptide repeat TPR_MalT PF17874.1 gi|530547667|ref|YP_008428199.1| - 3.4e-09 36.5 0.1 3.6e-07 29.9 0.0 2.8 1 1 1 2 2 2 2 MalT-like TPR region TPR_16 PF13432.6 gi|530547667|ref|YP_008428199.1| - 4.3e-08 33.7 2.9 0.00026 21.5 1.1 4.4 2 2 1 3 3 3 1 Tetratricopeptide repeat HTH_20 PF12840.7 gi|530547667|ref|YP_008428199.1| - 4.9e-08 32.9 0.4 1.5e-07 31.4 0.0 2.1 2 0 0 2 2 1 1 Helix-turn-helix domain NB-ARC PF00931.22 gi|530547667|ref|YP_008428199.1| - 4.9e-08 32.5 0.0 5.9e-07 28.9 0.0 2.2 1 1 0 1 1 1 1 NB-ARC domain HTH_5 PF01022.20 gi|530547667|ref|YP_008428199.1| - 3e-07 30.2 0.7 8.1e-07 28.8 0.1 2.0 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family TPR_19 PF14559.6 gi|530547667|ref|YP_008428199.1| - 3e-07 30.8 0.4 0.19 12.3 0.1 4.1 3 1 0 3 3 3 2 Tetratricopeptide repeat TPR_10 PF13374.6 gi|530547667|ref|YP_008428199.1| - 3.2e-07 30.0 2.6 0.41 10.6 0.0 4.8 4 0 0 4 4 4 2 Tetratricopeptide repeat AAA_16 PF13191.6 gi|530547667|ref|YP_008428199.1| - 5.2e-07 30.2 0.0 0.00036 20.9 0.0 2.7 2 0 0 2 2 2 1 AAA ATPase domain TPR_7 PF13176.6 gi|530547667|ref|YP_008428199.1| - 2.2e-06 27.3 1.8 4.9 7.4 0.0 6.0 4 1 0 4 4 4 0 Tetratricopeptide repeat TrmB PF01978.19 gi|530547667|ref|YP_008428199.1| - 4e-06 26.6 1.9 0.0033 17.3 0.0 3.7 3 1 0 3 3 3 1 Sugar-specific transcriptional regulator TrmB TPR_14 PF13428.6 gi|530547667|ref|YP_008428199.1| - 4.1e-06 27.2 7.2 1 10.4 0.1 6.4 5 2 1 6 6 5 1 Tetratricopeptide repeat MarR PF01047.22 gi|530547667|ref|YP_008428199.1| - 5.7e-05 23.0 0.2 0.026 14.4 0.0 2.9 2 0 0 2 2 2 1 MarR family HTH_24 PF13412.6 gi|530547667|ref|YP_008428199.1| - 7.2e-05 22.3 0.4 0.00015 21.2 0.4 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|530547667|ref|YP_008428199.1| - 9.9e-05 22.2 0.3 0.0026 17.6 0.0 2.5 2 0 0 2 2 2 1 MarR family ATPase_2 PF01637.18 gi|530547667|ref|YP_008428199.1| - 0.00011 22.2 2.7 0.0047 16.9 0.0 3.7 4 1 0 4 4 3 1 ATPase domain predominantly from Archaea ComR_TPR PF18710.1 gi|530547667|ref|YP_008428199.1| - 0.00018 21.1 2.2 0.0062 16.1 0.0 3.1 3 0 0 3 3 3 1 ComR tetratricopeptide PPR PF01535.20 gi|530547667|ref|YP_008428199.1| - 0.0002 21.4 0.5 13 6.3 0.1 5.3 4 0 0 4 4 4 0 PPR repeat TPR_6 PF13174.6 gi|530547667|ref|YP_008428199.1| - 0.00058 20.3 3.0 2.8 8.8 0.2 5.2 4 1 0 4 4 3 1 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|530547667|ref|YP_008428199.1| - 0.00067 19.8 1.1 0.86 9.9 0.8 3.0 2 0 0 2 2 2 1 Anaphase-promoting complex, cyclosome, subunit 3 AAA_22 PF13401.6 gi|530547667|ref|YP_008428199.1| - 0.001 19.3 0.1 0.008 16.5 0.1 2.4 1 1 0 1 1 1 1 AAA domain DUF3856 PF12968.7 gi|530547667|ref|YP_008428199.1| - 0.0014 18.7 0.6 0.014 15.5 0.9 2.3 1 1 1 2 2 2 1 Domain of Unknown Function (DUF3856) ANAPC5 PF12862.7 gi|530547667|ref|YP_008428199.1| - 0.0039 17.2 0.1 1.6 8.8 0.0 3.5 2 1 1 3 3 3 1 Anaphase-promoting complex subunit 5 AAA_24 PF13479.6 gi|530547667|ref|YP_008428199.1| - 0.004 16.9 0.0 0.033 13.9 0.0 2.1 2 0 0 2 2 2 1 AAA domain HTH_Crp_2 PF13545.6 gi|530547667|ref|YP_008428199.1| - 0.0056 16.6 0.1 0.04 13.9 0.0 2.3 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain ArsR PF09824.9 gi|530547667|ref|YP_008428199.1| - 0.006 16.2 0.0 0.016 14.8 0.0 1.7 1 0 0 1 1 1 1 ArsR transcriptional regulator PadR PF03551.14 gi|530547667|ref|YP_008428199.1| - 0.0064 16.4 0.3 2.8 8.0 0.0 2.9 2 0 0 2 2 2 1 Transcriptional regulator PadR-like family B-block_TFIIIC PF04182.12 gi|530547667|ref|YP_008428199.1| - 0.013 15.7 0.0 2.7 8.2 0.0 2.5 2 0 0 2 2 2 0 B-block binding subunit of TFIIIC TPR_11 PF13414.6 gi|530547667|ref|YP_008428199.1| - 0.015 14.9 3.4 9.4 6.0 0.2 4.1 4 0 0 4 4 4 0 TPR repeat AAA_14 PF13173.6 gi|530547667|ref|YP_008428199.1| - 0.016 15.2 0.0 0.052 13.6 0.0 1.9 1 1 0 1 1 1 0 AAA domain TPR_4 PF07721.14 gi|530547667|ref|YP_008428199.1| - 0.027 15.1 0.1 1.4 9.7 0.0 3.8 5 0 0 5 5 1 0 Tetratricopeptide repeat AAA_18 PF13238.6 gi|530547667|ref|YP_008428199.1| - 0.035 14.7 0.4 16 6.0 0.1 2.9 2 1 0 2 2 2 0 AAA domain AAA PF00004.29 gi|530547667|ref|YP_008428199.1| - 0.051 14.0 0.0 0.12 12.8 0.0 1.6 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) HTH_36 PF13730.6 gi|530547667|ref|YP_008428199.1| - 0.059 13.3 0.4 0.56 10.2 0.0 2.6 3 0 0 3 3 2 0 Helix-turn-helix domain HTH_27 PF13463.6 gi|530547667|ref|YP_008428199.1| - 0.1 13.1 0.1 2.3 8.7 0.0 2.6 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_IclR PF09339.10 gi|530547667|ref|YP_008428199.1| - 0.12 12.2 0.1 1.3 8.9 0.0 2.4 2 0 0 2 2 2 0 IclR helix-turn-helix domain NACHT PF05729.12 gi|530547667|ref|YP_008428199.1| - 0.15 11.9 0.0 0.3 11.0 0.0 1.6 1 0 0 1 1 1 0 NACHT domain RNA_helicase PF00910.22 gi|530547667|ref|YP_008428199.1| - 0.16 12.4 0.0 16 5.9 0.0 3.0 3 0 0 3 3 3 0 RNA helicase RPN7 PF10602.9 gi|530547667|ref|YP_008428199.1| - 0.68 9.6 2.4 2.9 7.6 0.1 2.7 3 1 0 3 3 2 0 26S proteasome subunit RPN7 Transglut_core2 PF13369.6 gi|530547668|ref|YP_008428200.1| - 0.0073 15.9 0.0 0.013 15.0 0.0 1.3 1 0 0 1 1 1 1 Transglutaminase-like superfamily DUF2635 PF10948.8 gi|530547669|ref|YP_008428201.1| - 0.093 12.5 0.0 0.35 10.6 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2635) HTH_46 PF15977.5 gi|530547670|ref|YP_008428202.1| - 0.0021 18.0 0.0 0.0021 18.0 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA binding DUF2583 PF10762.9 gi|530547671|ref|YP_008428203.1| - 1.6 9.2 5.5 18 5.9 5.5 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF2583) DUF2070 PF09843.9 gi|530547672|ref|YP_008428204.1| - 3.8 5.7 9.5 0.5 8.6 5.3 1.6 1 1 0 1 1 1 0 Predicted membrane protein (DUF2070) TMEM132D_C PF15706.5 gi|530547673|ref|YP_008428205.1| - 0.028 14.2 0.0 0.03 14.1 0.0 1.1 1 0 0 1 1 1 0 Mature oligodendrocyte transmembrane protein, TMEM132D, C-term Synaptobrevin PF00957.21 gi|530547673|ref|YP_008428205.1| - 0.063 13.1 0.0 0.073 12.9 0.0 1.1 1 0 0 1 1 1 0 Synaptobrevin DUF5305 PF17231.2 gi|530547673|ref|YP_008428205.1| - 0.065 12.6 0.1 0.069 12.5 0.1 1.0 1 0 0 1 1 1 0 Family of unknown function (DUF5305) UL45 PF05473.12 gi|530547673|ref|YP_008428205.1| - 0.07 12.8 0.0 0.081 12.6 0.0 1.0 1 0 0 1 1 1 0 UL45 protein, carbohydrate-binding C-type lectin-like DUF2207 PF09972.9 gi|530547673|ref|YP_008428205.1| - 0.11 11.3 0.0 0.11 11.2 0.0 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) TrmB PF01978.19 gi|530547674|ref|YP_008428206.1| - 4.3e-25 87.4 0.1 7e-25 86.7 0.1 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|530547674|ref|YP_008428206.1| - 1.5e-05 24.7 0.0 2.7e-05 23.9 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain Regulator_TrmB PF11495.8 gi|530547674|ref|YP_008428206.1| - 0.00031 20.0 0.0 0.00051 19.3 0.0 1.5 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB MarR_2 PF12802.7 gi|530547674|ref|YP_008428206.1| - 0.0026 17.6 0.0 0.006 16.4 0.0 1.6 1 0 0 1 1 1 1 MarR family Rrf2 PF02082.20 gi|530547674|ref|YP_008428206.1| - 0.0044 17.3 0.0 0.026 14.9 0.0 2.3 3 0 0 3 3 3 1 Transcriptional regulator UBA_3 PF09288.10 gi|530547674|ref|YP_008428206.1| - 0.033 14.0 0.9 10 6.0 0.1 3.7 4 0 0 4 4 4 0 Fungal ubiquitin-associated domain Fe_dep_repress PF01325.19 gi|530547674|ref|YP_008428206.1| - 0.045 14.0 0.0 0.096 12.9 0.0 1.6 1 1 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain LexA_DNA_bind PF01726.16 gi|530547674|ref|YP_008428206.1| - 0.081 12.7 0.0 0.26 11.1 0.0 1.8 1 0 0 1 1 1 0 LexA DNA binding domain HTH_24 PF13412.6 gi|530547674|ref|YP_008428206.1| - 0.11 12.1 0.0 0.2 11.2 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Fer4_7 PF12838.7 gi|530547675|ref|YP_008428207.1| - 4.6e-08 33.5 10.4 8.7e-08 32.6 10.4 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|530547675|ref|YP_008428207.1| - 2.4e-06 27.3 12.4 4.6e-05 23.3 3.8 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Dehalogenase PF13486.6 gi|530547675|ref|YP_008428207.1| - 7.3e-06 25.6 0.0 1.2e-05 24.9 0.0 1.2 1 0 0 1 1 1 1 Reductive dehalogenase subunit Fer4 PF00037.27 gi|530547675|ref|YP_008428207.1| - 2e-05 24.2 2.4 2e-05 24.2 2.4 2.8 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_10 PF13237.6 gi|530547675|ref|YP_008428207.1| - 9.8e-05 22.4 9.9 0.00041 20.4 10.4 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|530547675|ref|YP_008428207.1| - 0.00052 20.9 12.4 0.0074 17.2 12.4 2.3 1 1 0 1 1 1 1 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|530547675|ref|YP_008428207.1| - 0.0011 19.0 9.7 0.0036 17.4 9.8 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|530547675|ref|YP_008428207.1| - 0.0049 16.9 2.5 0.0049 16.9 2.5 2.9 2 1 0 2 2 2 1 4Fe-4S binding domain Fer4_8 PF13183.6 gi|530547675|ref|YP_008428207.1| - 0.018 15.5 2.4 0.77 10.3 0.3 2.4 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|530547675|ref|YP_008428207.1| - 0.024 14.7 7.3 0.051 13.7 7.3 1.5 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|530547675|ref|YP_008428207.1| - 0.14 12.7 11.5 0.1 13.1 2.3 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_3 PF12798.7 gi|530547675|ref|YP_008428207.1| - 0.31 12.1 13.3 0.25 12.4 5.7 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_17 PF13534.6 gi|530547675|ref|YP_008428207.1| - 2.5 8.7 11.2 48 4.6 0.8 2.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain Mucin PF01456.17 gi|530547676|ref|YP_008428208.1| - 0.76 9.8 28.4 1.3 9.0 28.4 1.3 1 0 0 1 1 1 0 Mucin-like glycoprotein ASD2 PF08687.11 gi|530547676|ref|YP_008428208.1| - 1.2 8.6 4.1 1.8 8.0 4.1 1.1 1 0 0 1 1 1 0 Apx/Shroom domain ASD2 RP-C_C PF11800.8 gi|530547676|ref|YP_008428208.1| - 7.6 6.6 5.9 12 5.9 5.9 1.2 1 0 0 1 1 1 0 Replication protein C C-terminal region CPSF100_C PF13299.6 gi|530547676|ref|YP_008428208.1| - 8.5 6.5 6.3 15 5.7 6.3 1.3 1 0 0 1 1 1 0 Cleavage and polyadenylation factor 2 C-terminal adh_short_C2 PF13561.6 gi|530547677|ref|YP_008428209.1| - 1.5e-49 168.7 0.0 2.2e-49 168.2 0.0 1.2 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|530547677|ref|YP_008428209.1| - 6.6e-35 120.3 0.0 7.9e-35 120.1 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|530547677|ref|YP_008428209.1| - 2e-07 31.1 0.0 3.4e-07 30.4 0.0 1.4 1 0 0 1 1 1 1 KR domain NAD_binding_10 PF13460.6 gi|530547677|ref|YP_008428209.1| - 3.6e-06 27.0 0.0 4.9e-06 26.6 0.0 1.2 1 0 0 1 1 1 1 NAD(P)H-binding 3HCDH_N PF02737.18 gi|530547677|ref|YP_008428209.1| - 0.0012 18.7 0.0 0.0023 17.8 0.0 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Methyltransf_11 PF08241.12 gi|530547677|ref|YP_008428209.1| - 0.0037 17.9 0.0 0.04 14.6 0.0 2.3 2 0 0 2 2 2 1 Methyltransferase domain ADH_zinc_N PF00107.26 gi|530547677|ref|YP_008428209.1| - 0.0053 16.7 0.0 0.011 15.7 0.0 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Methyltransf_25 PF13649.6 gi|530547677|ref|YP_008428209.1| - 0.0077 16.9 0.0 0.087 13.5 0.0 2.2 2 0 0 2 2 2 1 Methyltransferase domain UDPG_MGDP_dh_N PF03721.14 gi|530547677|ref|YP_008428209.1| - 0.036 13.6 0.0 0.059 12.9 0.0 1.2 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DUF1776 PF08643.10 gi|530547677|ref|YP_008428209.1| - 0.041 13.2 0.0 0.062 12.6 0.0 1.2 1 0 0 1 1 1 0 Fungal family of unknown function (DUF1776) Methyltransf_31 PF13847.6 gi|530547677|ref|YP_008428209.1| - 0.048 13.5 0.0 2.9 7.7 0.0 2.2 2 0 0 2 2 2 0 Methyltransferase domain ApbA PF02558.16 gi|530547677|ref|YP_008428209.1| - 0.061 13.0 0.0 0.1 12.2 0.0 1.3 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Glyco_tran_WecB PF03808.13 gi|530547677|ref|YP_008428209.1| - 0.064 13.2 0.0 0.11 12.4 0.0 1.3 1 0 0 1 1 1 0 Glycosyl transferase WecB/TagA/CpsF family CoA_binding_2 PF13380.6 gi|530547677|ref|YP_008428209.1| - 0.12 12.9 0.0 1.1 9.8 0.0 2.0 2 0 0 2 2 2 0 CoA binding domain DFP PF04127.15 gi|530547677|ref|YP_008428209.1| - 0.13 12.1 0.0 0.21 11.4 0.0 1.3 1 0 0 1 1 1 0 DNA / pantothenate metabolism flavoprotein Lactamase_B PF00753.27 gi|530547678|ref|YP_008428210.1| - 7.3e-14 52.2 1.6 1.8e-13 51.0 1.6 1.7 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|530547678|ref|YP_008428210.1| - 5e-10 39.2 0.1 7.9e-10 38.6 0.1 1.7 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 gi|530547678|ref|YP_008428210.1| - 0.1 12.1 0.0 0.14 11.5 0.0 1.3 1 0 0 1 1 1 0 Metallo-beta-lactamase superfamily domain Nitro_FeMo-Co PF02579.17 gi|564287474|ref|YP_008428212.3| - 2.9e-23 82.0 0.1 3.5e-23 81.7 0.1 1.1 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor Nitro_FeMo-Co PF02579.17 gi|530547681|ref|YP_008428213.1| - 2.1e-20 72.9 0.1 2.6e-20 72.6 0.1 1.1 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor DUF4766 PF15973.5 gi|530547681|ref|YP_008428213.1| - 3.7 8.2 9.6 19 5.8 9.6 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF4766) CbiA PF01656.23 gi|530547682|ref|YP_008428214.1| - 3.1e-22 79.0 0.0 4.5e-22 78.5 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|530547682|ref|YP_008428214.1| - 1.4e-16 60.7 0.3 1.9e-09 37.3 0.0 2.9 2 1 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase Fer4_6 PF12837.7 gi|530547682|ref|YP_008428214.1| - 2.6e-11 43.1 14.2 7.4e-07 29.0 2.9 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.27 gi|530547682|ref|YP_008428214.1| - 2e-10 40.0 14.0 2e-06 27.4 3.1 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|530547682|ref|YP_008428214.1| - 1.1e-09 38.2 7.9 2e-09 37.4 7.9 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|530547682|ref|YP_008428214.1| - 2.5e-07 30.7 7.3 4.7e-07 29.9 7.3 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_NifH PF00142.18 gi|530547682|ref|YP_008428214.1| - 2.7e-07 30.3 0.5 0.0048 16.4 0.2 2.2 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family Fer4_17 PF13534.6 gi|530547682|ref|YP_008428214.1| - 7.1e-06 26.5 2.7 0.064 13.8 0.5 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|530547682|ref|YP_008428214.1| - 7.9e-06 26.7 8.4 0.021 15.7 3.2 2.5 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_7 PF12838.7 gi|530547682|ref|YP_008428214.1| - 8.6e-06 26.3 13.4 4.1e-05 24.1 13.9 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|530547682|ref|YP_008428214.1| - 4.9e-05 23.2 12.1 0.012 15.7 1.5 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|530547682|ref|YP_008428214.1| - 8.4e-05 22.8 11.2 0.0091 16.4 1.6 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|530547682|ref|YP_008428214.1| - 0.00012 22.1 13.3 0.011 15.9 15.2 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain AAA_31 PF13614.6 gi|530547682|ref|YP_008428214.1| - 0.00014 21.8 0.2 0.0011 18.9 0.0 2.2 2 1 0 2 2 2 1 AAA domain MipZ PF09140.11 gi|530547682|ref|YP_008428214.1| - 0.00048 19.5 0.0 0.0009 18.6 0.0 1.5 1 0 0 1 1 1 1 ATPase MipZ ArsA_ATPase PF02374.15 gi|530547682|ref|YP_008428214.1| - 0.008 15.4 1.1 0.12 11.6 0.2 2.2 2 0 0 2 2 2 1 Anion-transporting ATPase CBP_BcsQ PF06564.12 gi|530547682|ref|YP_008428214.1| - 0.0082 15.6 0.1 0.54 9.7 0.0 2.1 2 0 0 2 2 2 1 Cellulose biosynthesis protein BcsQ RsgA_GTPase PF03193.16 gi|530547682|ref|YP_008428214.1| - 0.022 14.7 1.3 0.14 12.0 0.1 2.2 2 0 0 2 2 2 0 RsgA GTPase PhoH PF02562.16 gi|530547682|ref|YP_008428214.1| - 0.03 13.8 0.4 2.1 7.7 0.3 2.3 2 0 0 2 2 2 0 PhoH-like protein AAA_25 PF13481.6 gi|530547682|ref|YP_008428214.1| - 0.06 12.9 0.1 0.15 11.6 0.1 1.7 1 0 0 1 1 1 0 AAA domain Fer4_3 PF12798.7 gi|530547682|ref|YP_008428214.1| - 0.076 14.0 16.9 0.56 11.3 5.4 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_8 PF13183.6 gi|530547682|ref|YP_008428214.1| - 0.079 13.4 14.7 1.8 9.1 3.5 2.4 1 1 2 3 3 3 0 4Fe-4S dicluster domain GTP_EFTU PF00009.27 gi|530547682|ref|YP_008428214.1| - 0.11 12.0 0.1 0.17 11.4 0.1 1.5 1 1 0 1 1 1 0 Elongation factor Tu GTP binding domain Fer4_22 PF17179.4 gi|530547682|ref|YP_008428214.1| - 0.13 13.1 6.8 1 10.3 0.3 2.3 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|530547682|ref|YP_008428214.1| - 2.9 8.1 10.5 2.9 8.1 1.8 2.6 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|530547682|ref|YP_008428214.1| - 4.6 7.9 11.6 2.4 8.8 2.1 2.4 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I CbiA PF01656.23 gi|530547683|ref|YP_008428215.1| - 1.3e-22 80.2 0.0 1.7e-22 79.8 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|530547683|ref|YP_008428215.1| - 8.8e-16 58.1 0.4 1.2e-08 34.7 0.0 2.9 2 1 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase Fer4 PF00037.27 gi|530547683|ref|YP_008428215.1| - 9e-11 41.1 19.8 1.7e-06 27.6 6.9 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|530547683|ref|YP_008428215.1| - 4.5e-10 39.5 14.0 4.5e-10 39.5 14.0 1.7 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|530547683|ref|YP_008428215.1| - 9.6e-08 32.9 3.8 0.0089 16.9 0.0 2.5 2 1 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|530547683|ref|YP_008428215.1| - 1.8e-07 30.8 12.7 0.0014 18.6 2.8 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain AAA_31 PF13614.6 gi|530547683|ref|YP_008428215.1| - 1e-06 28.8 0.0 0.00078 19.4 0.0 2.2 2 0 0 2 2 2 2 AAA domain Fer4_17 PF13534.6 gi|530547683|ref|YP_008428215.1| - 1.4e-06 28.7 2.7 0.0044 17.5 0.8 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|530547683|ref|YP_008428215.1| - 1.5e-06 28.2 13.2 0.0025 17.9 0.8 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|530547683|ref|YP_008428215.1| - 9.6e-06 26.1 14.2 3.2e-05 24.4 14.4 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain CBP_BcsQ PF06564.12 gi|530547683|ref|YP_008428215.1| - 1e-05 25.2 0.0 0.1 12.1 0.0 2.2 2 0 0 2 2 2 2 Cellulose biosynthesis protein BcsQ Fer4_NifH PF00142.18 gi|530547683|ref|YP_008428215.1| - 1.8e-05 24.4 0.1 0.0083 15.6 0.0 2.4 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family Fer4_9 PF13187.6 gi|530547683|ref|YP_008428215.1| - 0.00024 21.2 13.9 0.0011 19.1 14.3 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|530547683|ref|YP_008428215.1| - 0.00031 20.7 17.0 0.045 13.9 2.3 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain ArsA_ATPase PF02374.15 gi|530547683|ref|YP_008428215.1| - 0.0004 19.7 0.0 0.00083 18.6 0.0 1.5 1 0 0 1 1 1 1 Anion-transporting ATPase AAA_26 PF13500.6 gi|530547683|ref|YP_008428215.1| - 0.00048 20.0 0.2 0.29 10.9 0.0 2.2 2 0 0 2 2 2 2 AAA domain Fer4_8 PF13183.6 gi|530547683|ref|YP_008428215.1| - 0.022 15.2 12.8 0.97 9.9 1.1 2.3 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|530547683|ref|YP_008428215.1| - 0.029 14.9 12.5 0.081 13.5 1.3 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain DUF4088 PF13317.6 gi|530547683|ref|YP_008428215.1| - 0.049 13.2 0.0 0.07 12.7 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4088) Fer4_15 PF13459.6 gi|530547683|ref|YP_008428215.1| - 0.061 14.1 8.4 1.7 9.4 0.3 2.9 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|530547683|ref|YP_008428215.1| - 0.33 11.5 14.4 2.1 8.9 5.3 2.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_22 PF17179.4 gi|530547683|ref|YP_008428215.1| - 1.5 9.7 13.8 12 6.9 3.8 2.4 1 1 1 2 2 2 0 4Fe-4S dicluster domain Radical_SAM PF04055.21 gi|564287475|ref|YP_008428216.3| - 3.8e-14 53.4 0.0 5.7e-14 52.8 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|564287475|ref|YP_008428216.3| - 2.2e-08 34.4 0.1 3.4e-08 33.9 0.1 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|564287475|ref|YP_008428216.3| - 8.8e-05 22.6 0.1 0.00033 20.8 0.1 1.8 1 1 1 2 2 2 1 4Fe-4S single cluster domain DUF134 PF02001.16 gi|530547685|ref|YP_008428217.1| - 3e-26 91.8 0.0 4e-26 91.4 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF134 Sigma70_r4 PF04545.16 gi|530547685|ref|YP_008428217.1| - 3.6e-09 36.0 0.1 5.4e-09 35.4 0.1 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4_2 PF08281.12 gi|530547685|ref|YP_008428217.1| - 1e-08 34.7 0.1 1.5e-08 34.2 0.1 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_23 PF13384.6 gi|530547685|ref|YP_008428217.1| - 5.4e-06 26.0 0.0 9.2e-06 25.3 0.0 1.3 1 0 0 1 1 1 1 Homeodomain-like domain Sigma70_ECF PF07638.11 gi|530547685|ref|YP_008428217.1| - 0.00018 21.5 0.2 0.00023 21.1 0.2 1.1 1 0 0 1 1 1 1 ECF sigma factor HTH_31 PF13560.6 gi|530547685|ref|YP_008428217.1| - 0.0006 20.1 0.0 0.00068 19.9 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_1 PF00126.27 gi|530547685|ref|YP_008428217.1| - 0.0034 17.3 0.1 0.0049 16.8 0.1 1.2 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_11 PF08279.12 gi|530547685|ref|YP_008428217.1| - 0.008 16.1 0.0 0.012 15.6 0.0 1.3 1 0 0 1 1 1 1 HTH domain HTH_24 PF13412.6 gi|530547685|ref|YP_008428217.1| - 0.013 15.0 0.0 0.019 14.5 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_38 PF13936.6 gi|530547685|ref|YP_008428217.1| - 0.014 15.1 0.0 0.026 14.3 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_3 PF01381.22 gi|530547685|ref|YP_008428217.1| - 0.021 14.9 0.0 0.037 14.1 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix HTH_Crp_2 PF13545.6 gi|530547685|ref|YP_008428217.1| - 0.023 14.7 0.1 0.033 14.1 0.1 1.3 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain MarR_2 PF12802.7 gi|530547685|ref|YP_008428217.1| - 0.058 13.3 0.0 0.094 12.6 0.0 1.3 1 0 0 1 1 1 0 MarR family HTH_28 PF13518.6 gi|530547685|ref|YP_008428217.1| - 0.076 13.2 0.1 0.076 13.2 0.1 1.7 2 1 0 2 2 1 0 Helix-turn-helix domain HTH_Tnp_4 PF13613.6 gi|530547685|ref|YP_008428217.1| - 0.083 12.6 0.0 0.11 12.2 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix of DDE superfamily endonuclease TnsD PF15978.5 gi|530547685|ref|YP_008428217.1| - 0.12 11.4 0.0 0.14 11.1 0.0 1.1 1 0 0 1 1 1 0 Tn7-like transposition protein D HTH_10 PF04967.12 gi|530547685|ref|YP_008428217.1| - 0.12 12.2 0.0 0.19 11.6 0.0 1.3 1 0 0 1 1 1 0 HTH DNA binding domain HTH_29 PF13551.6 gi|530547685|ref|YP_008428217.1| - 0.25 11.4 0.1 0.25 11.4 0.1 1.8 2 0 0 2 2 2 0 Winged helix-turn helix ERCC4 PF02732.15 gi|530547686|ref|YP_008428218.1| - 2.5e-28 99.3 0.0 9.3e-28 97.4 0.0 2.0 1 0 0 1 1 1 1 ERCC4 domain Helicase_C PF00271.31 gi|530547686|ref|YP_008428218.1| - 3.1e-27 95.1 0.2 1.4e-24 86.5 0.1 3.0 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|530547686|ref|YP_008428218.1| - 1.5e-18 67.4 1.2 2.1e-17 63.7 0.0 2.8 2 1 0 2 2 2 1 Type III restriction enzyme, res subunit DEAD PF00270.29 gi|530547686|ref|YP_008428218.1| - 2.6e-18 66.4 1.6 2e-16 60.3 0.0 3.2 3 0 0 3 3 3 1 DEAD/DEAH box helicase HHH_2 PF12826.7 gi|530547686|ref|YP_008428218.1| - 1.3e-10 41.2 0.0 4e-10 39.6 0.0 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|530547686|ref|YP_008428218.1| - 1.7e-06 28.5 1.0 5.5e-06 26.9 0.1 2.4 2 0 0 2 2 2 1 Helix-hairpin-helix domain HHH PF00633.23 gi|530547686|ref|YP_008428218.1| - 4.7e-06 26.2 0.0 1.9e-05 24.3 0.0 2.2 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_3 PF12836.7 gi|530547686|ref|YP_008428218.1| - 0.002 18.4 0.0 0.081 13.2 0.0 3.6 3 0 0 3 3 3 1 Helix-hairpin-helix motif ERCC3_RAD25_C PF16203.5 gi|530547686|ref|YP_008428218.1| - 0.048 12.9 2.4 0.29 10.3 2.4 2.3 1 1 0 1 1 1 0 ERCC3/RAD25/XPB C-terminal helicase DUF257 PF03192.13 gi|530547687|ref|YP_008428219.1| - 2.1e-54 184.5 4.2 2.4e-54 184.3 4.2 1.0 1 0 0 1 1 1 1 Pyrococcus protein of unknown function, DUF257 EFG_C PF00679.24 gi|530547688|ref|YP_008428220.1| - 0.0021 18.0 0.0 0.0038 17.2 0.0 1.4 1 1 0 1 1 1 1 Elongation factor G C-terminus Peptidase_M55 PF04951.13 gi|530547689|ref|YP_008428221.1| - 4.1e-83 278.8 0.0 4.7e-83 278.6 0.0 1.0 1 0 0 1 1 1 1 D-aminopeptidase DUF3283 PF11686.8 gi|530547689|ref|YP_008428221.1| - 0.063 13.1 1.3 11 6.0 0.0 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF3283) PcrB PF01884.17 gi|530547690|ref|YP_008428222.1| - 2.1e-67 226.9 0.1 2.6e-67 226.6 0.1 1.0 1 0 0 1 1 1 1 PcrB family His_biosynth PF00977.21 gi|530547690|ref|YP_008428222.1| - 2.5e-09 36.9 0.1 1.5e-08 34.4 0.0 1.9 2 0 0 2 2 2 1 Histidine biosynthesis protein Trp_syntA PF00290.20 gi|530547690|ref|YP_008428222.1| - 1.3e-07 30.7 0.5 1.7e-05 23.8 0.4 2.1 2 0 0 2 2 2 2 Tryptophan synthase alpha chain ThiG PF05690.14 gi|530547690|ref|YP_008428222.1| - 3e-07 30.0 0.7 0.00012 21.5 0.1 2.1 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG DHO_dh PF01180.21 gi|530547690|ref|YP_008428222.1| - 1.3e-05 24.6 0.1 8.2e-05 22.0 0.2 1.9 2 0 0 2 2 2 1 Dihydroorotate dehydrogenase Dus PF01207.17 gi|530547690|ref|YP_008428222.1| - 5.4e-05 22.4 0.1 0.0014 17.8 0.1 2.1 2 0 0 2 2 2 1 Dihydrouridine synthase (Dus) NanE PF04131.14 gi|530547690|ref|YP_008428222.1| - 5.5e-05 22.4 0.1 0.025 13.8 0.1 2.3 2 0 0 2 2 2 2 Putative N-acetylmannosamine-6-phosphate epimerase G3P_antiterm PF04309.12 gi|530547690|ref|YP_008428222.1| - 0.00025 20.5 0.2 0.00094 18.6 0.2 1.9 2 0 0 2 2 2 1 Glycerol-3-phosphate responsive antiterminator IMPDH PF00478.25 gi|530547690|ref|YP_008428222.1| - 0.0013 17.8 0.3 0.065 12.2 0.2 2.1 2 0 0 2 2 2 1 IMP dehydrogenase / GMP reductase domain BtpA PF03437.15 gi|530547690|ref|YP_008428222.1| - 0.0015 18.1 0.6 0.014 14.8 0.1 2.0 2 0 0 2 2 2 1 BtpA family TMP-TENI PF02581.17 gi|530547690|ref|YP_008428222.1| - 0.0038 16.6 0.5 0.0083 15.5 0.2 1.7 2 0 0 2 2 2 1 Thiamine monophosphate synthase OMPdecase PF00215.24 gi|530547690|ref|YP_008428222.1| - 0.02 14.5 0.1 0.022 14.3 0.1 1.3 1 1 0 1 1 1 0 Orotidine 5'-phosphate decarboxylase / HUMPS family Ribul_P_3_epim PF00834.19 gi|530547690|ref|YP_008428222.1| - 0.025 14.0 0.2 0.045 13.1 0.2 1.4 1 0 0 1 1 1 0 Ribulose-phosphate 3 epimerase family Usp PF00582.26 gi|530547690|ref|YP_008428222.1| - 0.045 14.3 0.4 8.6 6.9 0.1 2.2 2 0 0 2 2 2 0 Universal stress protein family FMN_dh PF01070.18 gi|530547690|ref|YP_008428222.1| - 0.049 12.7 0.1 0.17 10.8 0.0 1.8 2 0 0 2 2 2 0 FMN-dependent dehydrogenase NMO PF03060.15 gi|530547690|ref|YP_008428222.1| - 0.079 12.3 3.3 0.25 10.7 0.4 2.1 2 0 0 2 2 2 0 Nitronate monooxygenase DpaA_N PF16924.5 gi|530547690|ref|YP_008428222.1| - 0.079 13.0 0.2 0.23 11.6 0.1 1.8 2 0 0 2 2 2 0 Dipicolinate synthase subunit A N-terminal domain DUF123 PF01986.16 gi|530547691|ref|YP_008428223.1| - 8.3e-22 77.5 0.1 1.3e-21 76.9 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF123 GIY-YIG PF01541.24 gi|530547691|ref|YP_008428223.1| - 0.00077 19.7 0.1 0.0013 18.9 0.1 1.6 1 0 0 1 1 1 1 GIY-YIG catalytic domain PRD_Mga PF08270.11 gi|530547691|ref|YP_008428223.1| - 0.014 15.0 0.1 0.024 14.3 0.1 1.3 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) PRD domain DUF2095 PF09868.9 gi|530547692|ref|YP_008428224.1| - 1.1e-62 209.7 8.9 1.3e-62 209.5 8.9 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2095) ydhR PF08803.11 gi|530547692|ref|YP_008428224.1| - 0.045 13.7 0.0 0.083 12.8 0.0 1.4 1 0 0 1 1 1 0 Putative mono-oxygenase ydhR PYNP_C PF07831.13 gi|530547693|ref|YP_008428225.1| - 1e-15 57.2 0.1 3.7e-15 55.3 0.1 2.1 1 0 0 1 1 1 1 Pyrimidine nucleoside phosphorylase C-terminal domain Glycos_trans_3N PF02885.17 gi|530547693|ref|YP_008428225.1| - 2.7e-15 56.0 0.2 1.6e-14 53.5 0.1 2.3 2 0 0 2 2 2 1 Glycosyl transferase family, helical bundle domain Glycos_transf_3 PF00591.21 gi|530547693|ref|YP_008428225.1| - 7.5e-15 55.2 1.2 4.1e-14 52.8 1.2 2.0 1 1 0 1 1 1 1 Glycosyl transferase family, a/b domain DUF2254 PF10011.9 gi|530547693|ref|YP_008428225.1| - 7e-06 25.1 0.0 1.1e-05 24.5 0.0 1.2 1 0 0 1 1 1 1 Predicted membrane protein (DUF2254) Molydop_binding PF01568.21 gi|530547693|ref|YP_008428225.1| - 2e-05 24.5 0.1 6.1e-05 23.0 0.1 1.7 2 0 0 2 2 2 1 Molydopterin dinucleotide binding domain CDC48_N PF02359.18 gi|530547693|ref|YP_008428225.1| - 0.003 17.7 1.5 0.0072 16.5 0.4 2.3 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), N-terminal domain Asp_protease_2 PF13650.6 gi|530547693|ref|YP_008428225.1| - 0.061 14.0 0.1 1 10.0 0.0 2.7 2 0 0 2 2 2 0 Aspartyl protease gag-asp_proteas PF13975.6 gi|530547693|ref|YP_008428225.1| - 0.11 13.0 0.0 0.46 11.1 0.0 2.1 1 0 0 1 1 1 0 gag-polyprotein putative aspartyl protease Mst1_SARAH PF11629.8 gi|530547694|ref|YP_008428226.1| - 3.5 7.8 6.4 2.3 8.3 0.3 2.2 1 1 1 2 2 2 0 C terminal SARAH domain of Mst1 CbiA PF01656.23 gi|530547695|ref|YP_008428227.1| - 1.2e-24 86.8 0.4 1.9e-24 86.1 0.4 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|530547695|ref|YP_008428227.1| - 4.5e-22 78.8 0.2 6.7e-22 78.3 0.2 1.2 1 0 0 1 1 1 1 AAA domain ParA PF10609.9 gi|530547695|ref|YP_008428227.1| - 9.1e-19 67.9 2.4 2.7e-18 66.3 2.4 1.8 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase Fer4_NifH PF00142.18 gi|530547695|ref|YP_008428227.1| - 3.7e-13 49.5 0.4 1.5e-07 31.2 0.1 2.2 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CBP_BcsQ PF06564.12 gi|530547695|ref|YP_008428227.1| - 1.9e-10 40.7 0.0 2.5e-10 40.2 0.0 1.3 1 1 0 1 1 1 1 Cellulose biosynthesis protein BcsQ MipZ PF09140.11 gi|530547695|ref|YP_008428227.1| - 6.5e-10 38.7 0.2 5.1e-06 26.0 0.2 2.1 2 0 0 2 2 2 2 ATPase MipZ ArsA_ATPase PF02374.15 gi|530547695|ref|YP_008428227.1| - 9.9e-07 28.2 0.4 9.9e-07 28.2 0.4 1.9 2 1 0 2 2 2 1 Anion-transporting ATPase AAA_26 PF13500.6 gi|530547695|ref|YP_008428227.1| - 4.3e-06 26.7 0.9 4.3e-06 26.7 0.9 2.1 2 1 0 2 2 2 1 AAA domain VirC1 PF07015.11 gi|530547695|ref|YP_008428227.1| - 0.0005 19.4 0.2 0.001 18.4 0.2 1.4 1 0 0 1 1 1 1 VirC1 protein AAA_30 PF13604.6 gi|530547695|ref|YP_008428227.1| - 0.0043 16.8 0.2 0.0079 15.9 0.2 1.4 1 0 0 1 1 1 1 AAA domain SRP54 PF00448.22 gi|530547695|ref|YP_008428227.1| - 0.013 15.1 0.9 0.031 13.9 0.4 1.8 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain APS_kinase PF01583.20 gi|530547695|ref|YP_008428227.1| - 0.1 12.5 0.1 0.19 11.6 0.1 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase HU-DNA_bdg PF14848.6 gi|530547695|ref|YP_008428227.1| - 0.12 12.4 0.0 0.21 11.6 0.0 1.3 1 0 0 1 1 1 0 DNA-binding domain AAA_24 PF13479.6 gi|530547695|ref|YP_008428227.1| - 0.18 11.5 0.0 0.27 10.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|530547695|ref|YP_008428227.1| - 0.19 11.3 0.1 0.59 9.7 0.1 1.8 2 0 0 2 2 2 0 AAA domain Zeta_toxin PF06414.12 gi|530547695|ref|YP_008428227.1| - 0.22 10.8 0.2 0.43 9.8 0.2 1.4 1 0 0 1 1 1 0 Zeta toxin Band_7 PF01145.25 gi|530547696|ref|YP_008428228.1| - 3.4e-38 131.4 7.0 4.6e-38 131.0 7.0 1.2 1 0 0 1 1 1 1 SPFH domain / Band 7 family Band_7_1 PF13421.6 gi|530547696|ref|YP_008428228.1| - 3.9e-05 23.5 1.4 0.00013 21.8 0.5 2.2 2 1 0 2 2 2 1 SPFH domain-Band 7 family NfeD PF01957.18 gi|530547697|ref|YP_008428229.1| - 1.2e-20 73.7 1.6 5.3e-20 71.6 1.6 2.2 1 0 0 1 1 1 1 NfeD-like C-terminal, partner-binding CLP_protease PF00574.23 gi|530547697|ref|YP_008428229.1| - 4e-10 39.9 0.4 6.1e-10 39.3 0.4 1.3 1 0 0 1 1 1 1 Clp protease SDH_sah PF01972.16 gi|530547697|ref|YP_008428229.1| - 0.0014 17.7 0.3 0.0014 17.7 0.3 1.7 2 0 0 2 2 2 1 Serine dehydrogenase proteinase Peripla_BP_4 PF13407.6 gi|530547697|ref|YP_008428229.1| - 0.018 14.6 0.3 0.031 13.8 0.3 1.4 1 0 0 1 1 1 0 Periplasmic binding protein domain DUF4547 PF15080.6 gi|530547698|ref|YP_008428230.1| - 0.0034 17.1 0.1 0.0039 16.8 0.1 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4547) HhH-GPD PF00730.25 gi|530547699|ref|YP_008428231.1| - 9.6e-16 58.2 0.0 1.6e-15 57.5 0.0 1.3 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein NYD-SP28_assoc PF14775.6 gi|530547700|ref|YP_008428232.1| - 0.061 13.4 2.8 0.061 13.4 2.8 2.5 1 1 1 2 2 2 0 Sperm tail C-terminal domain UPF0242 PF06785.11 gi|530547700|ref|YP_008428232.1| - 0.18 11.9 16.1 0.23 11.5 16.1 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus DUF3450 PF11932.8 gi|530547700|ref|YP_008428232.1| - 0.35 10.1 10.3 0.47 9.7 10.1 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3450) RasGAP_C PF03836.15 gi|530547700|ref|YP_008428232.1| - 0.4 10.8 11.9 0.44 10.7 8.7 1.9 1 1 1 2 2 2 0 RasGAP C-terminus Cep57_MT_bd PF06657.13 gi|530547700|ref|YP_008428232.1| - 0.5 10.8 15.9 0.43 11.1 13.9 1.9 1 1 1 2 2 2 0 Centrosome microtubule-binding domain of Cep57 OmpH PF03938.14 gi|530547700|ref|YP_008428232.1| - 0.68 10.3 20.4 2.2 8.6 9.9 2.1 1 1 1 2 2 2 0 Outer membrane protein (OmpH-like) DUF572 PF04502.13 gi|530547700|ref|YP_008428232.1| - 0.77 9.3 20.0 0.83 9.2 20.0 1.0 1 0 0 1 1 1 0 Family of unknown function (DUF572) FUSC-like PF12805.7 gi|530547700|ref|YP_008428232.1| - 0.87 8.6 3.1 1 8.4 3.1 1.1 1 0 0 1 1 1 0 FUSC-like inner membrane protein yccS zf-C4H2 PF10146.9 gi|530547700|ref|YP_008428232.1| - 1.2 9.4 16.0 1.3 9.3 16.0 1.0 1 0 0 1 1 1 0 Zinc finger-containing protein CCDC-167 PF15188.6 gi|530547700|ref|YP_008428232.1| - 1.5 9.2 24.7 3.7 8.0 16.0 2.1 1 1 1 2 2 2 0 Coiled-coil domain-containing protein 167 DUF5446 PF17522.2 gi|530547700|ref|YP_008428232.1| - 2 8.6 20.8 0.041 14.0 10.8 2.1 1 1 1 2 2 2 0 Family of unknown function (DUF5446) Prefoldin PF02996.17 gi|530547700|ref|YP_008428232.1| - 2 8.3 18.3 8.7 6.3 7.1 2.8 1 1 2 3 3 3 0 Prefoldin subunit PCRF PF03462.18 gi|530547700|ref|YP_008428232.1| - 2.3 8.1 11.3 2.9 7.7 11.3 1.1 1 0 0 1 1 1 0 PCRF domain V_ATPase_I PF01496.19 gi|530547700|ref|YP_008428232.1| - 2.3 6.0 9.2 2.4 6.0 9.2 1.0 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family Rx_N PF18052.1 gi|530547700|ref|YP_008428232.1| - 2.4 8.5 12.0 0.91 9.8 7.3 2.3 1 1 2 3 3 3 0 Rx N-terminal domain AAA_11 PF13086.6 gi|530547700|ref|YP_008428232.1| - 4.2 7.1 8.9 4.9 6.9 8.9 1.1 1 0 0 1 1 1 0 AAA domain ACCA PF03255.14 gi|530547700|ref|YP_008428232.1| - 4.7 7.1 9.7 9.5 6.1 9.5 1.6 1 1 0 1 1 1 0 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit FapA PF03961.13 gi|530547700|ref|YP_008428232.1| - 4.8 5.7 14.4 5.4 5.5 14.4 1.1 1 0 0 1 1 1 0 Flagellar Assembly Protein A Syntaxin-6_N PF09177.11 gi|530547700|ref|YP_008428232.1| - 5.1 7.7 11.3 5.6 7.6 3.4 2.2 1 1 1 2 2 2 0 Syntaxin 6, N-terminal YojJ PF10372.9 gi|530547700|ref|YP_008428232.1| - 5.2 7.2 11.5 8 6.6 0.6 3.0 1 1 2 3 3 3 0 Bacterial membrane-spanning protein N-terminus CorA PF01544.18 gi|530547700|ref|YP_008428232.1| - 5.7 6.2 10.8 7.4 5.8 10.8 1.1 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein Atg14 PF10186.9 gi|530547700|ref|YP_008428232.1| - 6.2 5.8 14.9 6.9 5.7 14.9 1.1 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 DUF883 PF05957.13 gi|530547700|ref|YP_008428232.1| - 9.1 7.0 9.7 3 8.5 6.3 1.8 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) GOLGA2L5 PF15070.6 gi|530547701|ref|YP_008428233.1| - 0.0015 17.3 0.8 0.0017 17.2 0.8 1.1 1 0 0 1 1 1 1 Putative golgin subfamily A member 2-like protein 5 YabA PF06156.13 gi|530547701|ref|YP_008428233.1| - 0.002 18.7 2.4 0.0022 18.6 1.1 1.7 2 0 0 2 2 1 1 Initiation control protein YabA UPF0242 PF06785.11 gi|530547701|ref|YP_008428233.1| - 0.0039 17.3 1.5 0.0048 17.0 1.5 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0242) N-terminus Ax_dynein_light PF10211.9 gi|530547701|ref|YP_008428233.1| - 0.0069 16.4 1.8 0.011 15.7 1.8 1.4 1 1 0 1 1 1 1 Axonemal dynein light chain ZapB PF06005.12 gi|530547701|ref|YP_008428233.1| - 0.0079 16.6 4.5 0.0079 16.6 4.5 2.1 1 1 1 2 2 2 1 Cell division protein ZapB Prominin PF05478.11 gi|530547701|ref|YP_008428233.1| - 0.018 13.0 0.4 0.021 12.8 0.4 1.0 1 0 0 1 1 1 0 Prominin DUF4472 PF14739.6 gi|530547701|ref|YP_008428233.1| - 0.02 15.7 3.9 0.037 14.8 2.3 1.8 1 1 1 2 2 2 0 Domain of unknown function (DUF4472) Taxilin PF09728.9 gi|530547701|ref|YP_008428233.1| - 0.025 13.8 4.8 0.035 13.3 4.8 1.3 1 0 0 1 1 1 0 Myosin-like coiled-coil protein Shugoshin_N PF07558.11 gi|530547701|ref|YP_008428233.1| - 0.045 13.6 7.8 0.34 10.8 0.1 3.1 2 1 0 2 2 2 0 Shugoshin N-terminal coiled-coil region BRI3BP PF14965.6 gi|530547701|ref|YP_008428233.1| - 0.063 12.8 0.1 0.1 12.1 0.1 1.4 1 0 0 1 1 1 0 Negative regulator of p53/TP53 BRE1 PF08647.11 gi|530547701|ref|YP_008428233.1| - 0.073 13.1 4.5 0.047 13.8 1.8 1.9 1 1 1 2 2 2 0 BRE1 E3 ubiquitin ligase BLOC1_2 PF10046.9 gi|530547701|ref|YP_008428233.1| - 0.1 12.9 0.4 0.1 12.9 0.4 2.0 2 1 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 V_ATPase_I PF01496.19 gi|530547701|ref|YP_008428233.1| - 0.12 10.3 0.5 0.13 10.1 0.5 1.0 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family CENP-F_leu_zip PF10473.9 gi|530547701|ref|YP_008428233.1| - 0.12 12.4 9.1 3.2 7.8 9.1 2.0 1 1 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 TSC22 PF01166.18 gi|530547701|ref|YP_008428233.1| - 0.12 12.7 8.1 0.22 11.9 0.7 3.1 2 1 1 3 3 3 0 TSC-22/dip/bun family APG6_N PF17675.1 gi|530547701|ref|YP_008428233.1| - 0.31 11.6 5.2 0.54 10.8 5.2 1.5 1 1 0 1 1 1 0 Apg6 coiled-coil region Prefoldin_2 PF01920.20 gi|530547701|ref|YP_008428233.1| - 0.42 10.6 5.6 0.53 10.3 0.6 2.5 2 1 0 2 2 2 0 Prefoldin subunit ATG16 PF08614.11 gi|530547701|ref|YP_008428233.1| - 0.42 10.8 7.7 7.7 6.7 7.7 2.3 1 1 0 1 1 1 0 Autophagy protein 16 (ATG16) TMF_TATA_bd PF12325.8 gi|530547701|ref|YP_008428233.1| - 0.78 10.0 8.5 1.7 8.9 6.0 2.3 1 1 0 2 2 2 0 TATA element modulatory factor 1 TATA binding GAS PF13851.6 gi|530547701|ref|YP_008428233.1| - 0.83 9.0 10.6 1.7 8.0 2.2 2.1 1 1 1 2 2 2 0 Growth-arrest specific micro-tubule binding TMF_DNA_bd PF12329.8 gi|530547701|ref|YP_008428233.1| - 0.89 9.6 13.6 0.24 11.4 1.8 3.0 1 1 3 4 4 4 0 TATA element modulatory factor 1 DNA binding Csm1_N PF18504.1 gi|530547701|ref|YP_008428233.1| - 1 9.8 9.1 4.8 7.6 1.1 2.8 2 1 1 3 3 3 0 Csm1 N-terminal domain FlaC_arch PF05377.11 gi|530547701|ref|YP_008428233.1| - 1.1 9.7 5.5 7.2 7.1 2.6 2.8 2 1 0 2 2 2 0 Flagella accessory protein C (FlaC) bZIP_2 PF07716.15 gi|530547701|ref|YP_008428233.1| - 1.4 9.1 12.8 0.18 11.9 0.9 3.0 3 1 0 3 3 3 0 Basic region leucine zipper DUF4635 PF15466.6 gi|530547701|ref|YP_008428233.1| - 2 8.0 6.2 0.25 10.8 2.1 1.6 2 1 0 2 2 2 0 Domain of unknown function (DUF4635) ABC_tran_CTD PF16326.5 gi|530547701|ref|YP_008428233.1| - 2 8.7 9.1 3 8.2 5.7 2.5 1 1 1 2 2 2 0 ABC transporter C-terminal domain DUF5595 PF18077.1 gi|530547701|ref|YP_008428233.1| - 2.4 8.3 5.4 1.3 9.1 1.4 2.3 2 1 0 2 2 2 0 Domain of unknown function (DUF5595) DEAD PF00270.29 gi|530547702|ref|YP_008428234.1| - 2.4e-23 82.8 0.0 4.9e-23 81.8 0.0 1.5 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|530547702|ref|YP_008428234.1| - 1.6e-19 70.3 0.0 8.2e-19 68.0 0.0 2.1 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DUF1998 PF09369.10 gi|530547702|ref|YP_008428234.1| - 7.5e-16 58.7 0.0 2.3e-15 57.1 0.0 1.9 1 0 0 1 1 1 1 Domain of unknown function (DUF1998) ResIII PF04851.15 gi|530547702|ref|YP_008428234.1| - 2.3e-08 34.2 0.0 5.8e-08 32.9 0.0 1.7 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Adeno_IVa2 PF02456.15 gi|530547702|ref|YP_008428234.1| - 0.16 10.7 0.0 0.26 10.0 0.0 1.2 1 0 0 1 1 1 0 Adenovirus IVa2 protein ABC_tran PF00005.27 gi|530547705|ref|YP_008428237.1| - 2.3e-44 151.2 0.0 8.3e-23 81.4 0.0 2.5 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 gi|530547705|ref|YP_008428237.1| - 1.4e-14 54.6 5.0 0.002 18.0 0.1 4.3 3 1 1 4 4 4 4 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|530547705|ref|YP_008428237.1| - 5.7e-13 48.8 6.2 2.9e-05 23.6 1.7 4.1 3 1 0 3 3 3 3 RecF/RecN/SMC N terminal domain RLI PF04068.15 gi|530547705|ref|YP_008428237.1| - 4.6e-12 45.5 2.0 9.8e-12 44.5 2.0 1.6 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI Fer4_6 PF12837.7 gi|530547705|ref|YP_008428237.1| - 2.2e-09 37.0 12.5 0.00016 21.6 3.0 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain AAA PF00004.29 gi|530547705|ref|YP_008428237.1| - 4.7e-07 30.3 0.7 0.012 16.0 0.0 3.3 2 1 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) Fer4 PF00037.27 gi|530547705|ref|YP_008428237.1| - 7.5e-07 28.7 3.5 7.5e-07 28.7 3.5 3.5 3 1 0 3 3 3 1 4Fe-4S binding domain Fer4_7 PF12838.7 gi|530547705|ref|YP_008428237.1| - 4.3e-06 27.2 7.2 0.00069 20.2 0.7 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Rad17 PF03215.15 gi|530547705|ref|YP_008428237.1| - 9.6e-06 25.6 0.0 0.092 12.7 0.0 2.3 2 0 0 2 2 2 2 Rad17 P-loop domain Fer4_21 PF14697.6 gi|530547705|ref|YP_008428237.1| - 9.8e-06 25.6 10.7 2.6e-05 24.2 10.7 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain AAA_18 PF13238.6 gi|530547705|ref|YP_008428237.1| - 1.3e-05 25.8 0.9 0.0089 16.6 0.1 3.9 3 1 1 4 4 4 1 AAA domain AAA_16 PF13191.6 gi|530547705|ref|YP_008428237.1| - 1.7e-05 25.3 0.2 0.12 12.7 0.0 2.8 2 1 0 2 2 2 2 AAA ATPase domain Fer4_10 PF13237.6 gi|530547705|ref|YP_008428237.1| - 2.2e-05 24.5 10.3 0.00087 19.4 10.8 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|530547705|ref|YP_008428237.1| - 3.5e-05 23.9 6.6 9.1e-05 22.5 6.8 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain AAA_24 PF13479.6 gi|530547705|ref|YP_008428237.1| - 4.2e-05 23.4 0.2 0.071 12.8 0.1 2.4 2 0 0 2 2 2 2 AAA domain AAA_15 PF13175.6 gi|530547705|ref|YP_008428237.1| - 4.6e-05 23.3 0.2 0.21 11.3 0.0 3.7 3 1 0 4 4 4 1 AAA ATPase domain Fer4_2 PF12797.7 gi|530547705|ref|YP_008428237.1| - 0.00012 21.9 11.3 0.0026 17.8 1.9 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain AAA_28 PF13521.6 gi|530547705|ref|YP_008428237.1| - 0.00039 20.7 0.1 1.1 9.5 0.0 2.9 3 0 0 3 3 2 2 AAA domain AAA_23 PF13476.6 gi|530547705|ref|YP_008428237.1| - 0.00051 20.6 8.1 0.18 12.3 0.0 3.0 2 1 0 2 2 2 1 AAA domain AAA_30 PF13604.6 gi|530547705|ref|YP_008428237.1| - 0.00069 19.4 1.4 0.62 9.7 0.0 2.9 3 1 0 3 3 2 2 AAA domain AAA_33 PF13671.6 gi|530547705|ref|YP_008428237.1| - 0.00091 19.4 1.5 0.44 10.7 0.1 2.9 2 1 0 2 2 2 1 AAA domain RNA_helicase PF00910.22 gi|530547705|ref|YP_008428237.1| - 0.0013 19.1 0.1 2.2 8.7 0.0 2.5 2 0 0 2 2 2 1 RNA helicase AAA_14 PF13173.6 gi|530547705|ref|YP_008428237.1| - 0.0015 18.5 0.8 1.3 9.1 0.0 3.6 4 0 0 4 4 3 1 AAA domain AAA_29 PF13555.6 gi|530547705|ref|YP_008428237.1| - 0.0018 18.0 0.3 2.1 8.1 0.1 2.4 2 0 0 2 2 2 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|530547705|ref|YP_008428237.1| - 0.0018 18.2 0.1 0.18 11.7 0.0 2.4 2 0 0 2 2 2 1 RsgA GTPase NACHT PF05729.12 gi|530547705|ref|YP_008428237.1| - 0.003 17.5 1.1 0.28 11.1 0.0 2.5 2 0 0 2 2 2 1 NACHT domain AAA_22 PF13401.6 gi|530547705|ref|YP_008428237.1| - 0.0044 17.3 2.6 0.49 10.7 0.0 3.0 3 1 0 3 3 2 1 AAA domain dNK PF01712.19 gi|530547705|ref|YP_008428237.1| - 0.0054 16.6 0.1 2.6 7.8 0.0 2.4 2 0 0 2 2 2 1 Deoxynucleoside kinase TsaE PF02367.17 gi|530547705|ref|YP_008428237.1| - 0.0061 16.6 0.8 0.58 10.2 0.0 3.1 3 0 0 3 3 3 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE SRP54 PF00448.22 gi|530547705|ref|YP_008428237.1| - 0.012 15.2 2.9 0.58 9.8 0.1 2.4 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain NB-ARC PF00931.22 gi|530547705|ref|YP_008428237.1| - 0.013 14.7 0.1 1.4 8.1 0.0 2.5 2 0 0 2 2 2 0 NB-ARC domain Fer4_16 PF13484.6 gi|530547705|ref|YP_008428237.1| - 0.015 16.2 10.1 0.055 14.4 3.1 2.5 1 1 2 3 3 3 0 4Fe-4S double cluster binding domain AAA_13 PF13166.6 gi|530547705|ref|YP_008428237.1| - 0.025 13.2 0.2 3.6 6.1 0.0 2.1 2 0 0 2 2 2 0 AAA domain PhoH PF02562.16 gi|530547705|ref|YP_008428237.1| - 0.034 13.6 0.2 9.9 5.5 0.0 2.5 2 0 0 2 2 2 0 PhoH-like protein AAA_7 PF12775.7 gi|530547705|ref|YP_008428237.1| - 0.034 13.6 0.1 9.3 5.7 0.0 2.4 2 0 0 2 2 2 0 P-loop containing dynein motor region RuvB_N PF05496.12 gi|530547705|ref|YP_008428237.1| - 0.039 13.7 0.3 12 5.6 0.1 2.7 2 1 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain DLIC PF05783.11 gi|530547705|ref|YP_008428237.1| - 0.044 12.6 0.3 0.34 9.7 0.1 2.0 2 0 0 2 2 2 0 Dynein light intermediate chain (DLIC) AAA_5 PF07728.14 gi|530547705|ref|YP_008428237.1| - 0.045 13.7 0.5 14 5.7 0.0 2.6 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) MMR_HSR1 PF01926.23 gi|530547705|ref|YP_008428237.1| - 0.061 13.4 0.6 3.2 7.9 0.0 2.8 3 1 0 3 3 2 0 50S ribosome-binding GTPase VirE PF05272.11 gi|530547705|ref|YP_008428237.1| - 0.062 13.0 0.0 5.3 6.7 0.0 2.3 2 0 0 2 2 2 0 Virulence-associated protein E ATPase PF06745.13 gi|530547705|ref|YP_008428237.1| - 0.075 12.4 0.8 2.5 7.4 0.1 2.4 2 0 0 2 2 2 0 KaiC AAA_25 PF13481.6 gi|530547705|ref|YP_008428237.1| - 0.077 12.6 4.8 2.6 7.6 0.1 3.3 4 0 0 4 4 4 0 AAA domain ATP_bind_1 PF03029.17 gi|530547705|ref|YP_008428237.1| - 0.079 12.7 0.2 6 6.6 0.1 2.7 3 0 0 3 3 2 0 Conserved hypothetical ATP binding protein ATPase_2 PF01637.18 gi|530547705|ref|YP_008428237.1| - 0.09 12.7 0.4 7.7 6.4 0.1 2.4 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea RNase_Zc3h12a PF11977.8 gi|530547705|ref|YP_008428237.1| - 0.09 12.5 0.0 0.3 10.9 0.0 1.9 1 0 0 1 1 1 0 Zc3h12a-like Ribonuclease NYN domain IstB_IS21 PF01695.17 gi|530547705|ref|YP_008428237.1| - 0.14 11.8 0.2 9.5 5.9 0.0 2.9 3 0 0 3 3 2 0 IstB-like ATP binding protein SbcCD_C PF13558.6 gi|530547705|ref|YP_008428237.1| - 0.15 12.4 0.2 13 6.1 0.1 2.9 2 2 0 2 2 2 0 Putative exonuclease SbcCD, C subunit MobB PF03205.14 gi|530547705|ref|YP_008428237.1| - 0.2 11.6 1.1 9.4 6.1 0.0 3.0 3 0 0 3 3 3 0 Molybdopterin guanine dinucleotide synthesis protein B Fer4_3 PF12798.7 gi|530547705|ref|YP_008428237.1| - 0.23 12.5 17.5 1 10.4 5.5 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain AAA_19 PF13245.6 gi|530547705|ref|YP_008428237.1| - 0.32 11.3 4.0 16 5.8 0.2 2.9 3 0 0 3 3 3 0 AAA domain Fer4_4 PF12800.7 gi|530547705|ref|YP_008428237.1| - 0.41 11.3 13.8 0.77 10.4 3.6 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_17 PF13534.6 gi|530547705|ref|YP_008428237.1| - 1.2 9.7 9.7 0.42 11.2 2.7 2.4 1 1 1 2 2 2 0 4Fe-4S dicluster domain NTPase_1 PF03266.15 gi|530547705|ref|YP_008428237.1| - 2 8.3 7.5 3.4 7.5 0.2 3.3 4 0 0 4 4 3 0 NTPase Fer4_8 PF13183.6 gi|530547705|ref|YP_008428237.1| - 5 7.6 11.6 1.7 9.1 3.5 2.4 1 1 1 2 2 2 0 4Fe-4S dicluster domain GHMP_kinases_C PF08544.13 gi|530547706|ref|YP_008428238.1| - 3.6e-07 30.4 0.0 8.7e-07 29.2 0.0 1.7 1 0 0 1 1 1 1 GHMP kinases C terminal GHMP_kinases_N PF00288.26 gi|530547706|ref|YP_008428238.1| - 9.1e-07 29.0 0.0 1.6e-06 28.3 0.0 1.4 1 0 0 1 1 1 1 GHMP kinases N terminal domain Pterin_bind PF00809.22 gi|530547707|ref|YP_008428239.1| - 1.1e-62 211.9 0.0 1.3e-62 211.7 0.0 1.0 1 0 0 1 1 1 1 Pterin binding enzyme CdhD PF03599.16 gi|530547707|ref|YP_008428239.1| - 1.2e-05 24.3 0.4 1.5e-05 23.9 0.4 1.1 1 0 0 1 1 1 1 CO dehydrogenase/acetyl-CoA synthase delta subunit DUF561 PF04481.12 gi|530547707|ref|YP_008428239.1| - 0.014 14.5 0.6 0.074 12.2 0.3 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF561) DUF4974 PF16344.5 gi|530547707|ref|YP_008428239.1| - 0.083 12.9 0.1 0.43 10.6 0.1 2.3 3 1 0 3 3 3 0 Domain of unknown function (DUF4974) PEP-utilizers PF00391.23 gi|530547707|ref|YP_008428239.1| - 0.11 12.2 0.1 0.35 10.6 0.0 2.0 2 0 0 2 2 2 0 PEP-utilising enzyme, mobile domain GATase_4 PF13230.6 gi|530547708|ref|YP_008428240.1| - 1.7e-08 33.7 0.0 2.2e-08 33.3 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferases class-II GATase_6 PF13522.6 gi|530547708|ref|YP_008428240.1| - 7.9e-07 29.3 0.0 1.1e-06 28.8 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase domain Sdh5 PF03937.16 gi|530547708|ref|YP_008428240.1| - 0.066 13.2 0.0 4 7.5 0.0 2.5 2 0 0 2 2 2 0 Flavinator of succinate dehydrogenase DUF364 PF04016.12 gi|530547709|ref|YP_008428241.1| - 1.3e-35 122.2 0.0 3.7e-35 120.7 0.0 1.6 2 0 0 2 2 2 1 Putative heavy-metal chelation DUF4213 PF13938.6 gi|530547709|ref|YP_008428241.1| - 9.7e-15 54.6 0.0 1.8e-14 53.7 0.0 1.5 1 0 0 1 1 1 1 Putative heavy-metal chelation HSDR_N PF04313.14 gi|530547710|ref|YP_008428242.1| - 4.4e-12 46.3 0.8 2.2e-08 34.3 0.8 2.3 1 1 0 1 1 1 1 Type I restriction enzyme R protein N terminus (HSDR_N) HSDR_N_2 PF13588.6 gi|530547710|ref|YP_008428242.1| - 8.5e-11 41.8 0.0 1.7e-10 40.9 0.0 1.5 1 0 0 1 1 1 1 Type I restriction enzyme R protein N terminus (HSDR_N) PDDEXK_9 PF08011.11 gi|530547710|ref|YP_008428242.1| - 0.0017 18.2 0.1 0.0037 17.1 0.1 1.7 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily HTH_33 PF13592.6 gi|530547710|ref|YP_008428242.1| - 0.064 12.9 0.1 0.62 9.7 0.1 2.5 2 1 0 2 2 2 0 Winged helix-turn helix BTHB PF18410.1 gi|530547710|ref|YP_008428242.1| - 0.074 12.9 0.3 1.2 9.0 0.0 2.6 2 0 0 2 2 2 0 Basic tilted helix bundle domain Epimerase PF01370.21 gi|530547712|ref|YP_008428244.1| - 4.4e-63 213.0 0.1 5.2e-63 212.7 0.1 1.0 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|530547712|ref|YP_008428244.1| - 6.3e-60 203.3 0.0 8.9e-60 202.8 0.0 1.2 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 gi|530547712|ref|YP_008428244.1| - 1.6e-24 86.4 0.5 3.6e-24 85.2 0.5 1.5 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.17 gi|530547712|ref|YP_008428244.1| - 7.6e-20 71.2 0.0 9.9e-20 70.8 0.0 1.0 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.15 gi|530547712|ref|YP_008428244.1| - 8.8e-16 57.9 1.4 1.2e-14 54.2 1.3 2.2 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.12 gi|530547712|ref|YP_008428244.1| - 8.4e-13 48.1 0.0 3.4e-09 36.3 0.0 2.4 1 1 1 2 2 2 2 Male sterility protein NAD_binding_10 PF13460.6 gi|530547712|ref|YP_008428244.1| - 2.9e-07 30.6 0.0 4.4e-07 30.0 0.0 1.3 1 0 0 1 1 1 1 NAD(P)H-binding adh_short PF00106.25 gi|530547712|ref|YP_008428244.1| - 7.3e-06 25.6 0.2 2e-05 24.1 0.2 1.8 1 1 0 1 1 1 1 short chain dehydrogenase Sacchrp_dh_NADP PF03435.18 gi|530547712|ref|YP_008428244.1| - 1.1e-05 25.7 0.6 2.6e-05 24.5 0.1 1.7 2 0 0 2 2 2 1 Saccharopine dehydrogenase NADP binding domain NmrA PF05368.13 gi|530547712|ref|YP_008428244.1| - 2e-05 24.3 0.2 3.6e-05 23.4 0.2 1.4 1 0 0 1 1 1 1 NmrA-like family TrkA_N PF02254.18 gi|530547712|ref|YP_008428244.1| - 0.00057 20.1 0.9 0.001 19.3 0.1 1.8 2 0 0 2 2 2 1 TrkA-N domain Shikimate_DH PF01488.20 gi|530547712|ref|YP_008428244.1| - 0.0065 16.5 0.5 0.012 15.7 0.1 1.7 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase DUF1188 PF06690.11 gi|530547712|ref|YP_008428244.1| - 0.014 15.0 0.1 0.021 14.4 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1188) KR PF08659.10 gi|530547712|ref|YP_008428244.1| - 0.067 13.1 0.8 0.82 9.6 0.3 2.4 2 1 0 2 2 2 0 KR domain NAD_binding_2 PF03446.15 gi|530547712|ref|YP_008428244.1| - 0.13 12.4 0.0 0.21 11.8 0.0 1.3 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase Prefoldin PF02996.17 gi|530547714|ref|YP_008428246.1| - 2.5e-28 98.4 7.2 3.4e-28 98.0 7.2 1.2 1 0 0 1 1 1 1 Prefoldin subunit Prefoldin_2 PF01920.20 gi|530547714|ref|YP_008428246.1| - 8.8e-05 22.4 15.7 0.0017 18.3 4.0 2.2 2 0 0 2 2 2 2 Prefoldin subunit Fib_alpha PF08702.10 gi|530547714|ref|YP_008428246.1| - 0.00013 22.2 4.7 0.00013 22.1 3.8 1.5 1 1 0 1 1 1 1 Fibrinogen alpha/beta chain family PriC PF07445.12 gi|530547714|ref|YP_008428246.1| - 0.001 19.0 6.3 0.0021 18.0 6.3 1.5 1 1 0 1 1 1 1 Primosomal replication protein priC KLRAQ PF10205.9 gi|530547714|ref|YP_008428246.1| - 0.0019 18.4 8.6 0.023 14.9 2.2 2.3 2 0 0 2 2 2 1 Predicted coiled-coil domain-containing protein PspA_IM30 PF04012.12 gi|530547714|ref|YP_008428246.1| - 0.002 17.8 3.4 0.002 17.8 3.4 2.1 2 0 0 2 2 2 1 PspA/IM30 family ERM PF00769.19 gi|530547714|ref|YP_008428246.1| - 0.0047 16.8 16.0 0.0085 15.9 7.3 2.0 2 0 0 2 2 2 1 Ezrin/radixin/moesin family OmpH PF03938.14 gi|530547714|ref|YP_008428246.1| - 0.012 16.0 4.2 0.012 16.0 4.2 2.2 2 0 0 2 2 2 0 Outer membrane protein (OmpH-like) FmiP_Thoc5 PF09766.9 gi|530547714|ref|YP_008428246.1| - 0.012 14.9 4.2 0.012 14.9 4.2 1.7 2 0 0 2 2 2 0 Fms-interacting protein/Thoc5 SlyX PF04102.12 gi|530547714|ref|YP_008428246.1| - 0.013 16.1 5.2 0.013 16.1 5.2 2.4 2 0 0 2 2 2 0 SlyX Med9 PF07544.13 gi|530547714|ref|YP_008428246.1| - 0.02 15.0 1.9 0.02 15.0 1.9 2.8 2 1 1 3 3 3 0 RNA polymerase II transcription mediator complex subunit 9 Jnk-SapK_ap_N PF09744.9 gi|530547714|ref|YP_008428246.1| - 0.021 15.0 2.8 0.021 15.0 2.8 2.1 2 0 0 2 2 2 0 JNK_SAPK-associated protein-1 Spc7 PF08317.11 gi|530547714|ref|YP_008428246.1| - 0.049 12.5 10.8 0.019 13.8 1.4 2.0 2 0 0 2 2 2 0 Spc7 kinetochore protein Noelin-1 PF12308.8 gi|530547714|ref|YP_008428246.1| - 0.059 13.4 4.9 0.45 10.5 0.9 2.1 2 0 0 2 2 2 0 Neurogenesis glycoprotein Fusion_gly PF00523.18 gi|530547714|ref|YP_008428246.1| - 0.068 11.4 0.7 0.1 10.8 0.7 1.4 1 0 0 1 1 1 0 Fusion glycoprotein F0 COG2 PF06148.11 gi|530547714|ref|YP_008428246.1| - 0.069 13.2 0.8 0.069 13.2 0.8 1.9 2 1 0 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 DUF1664 PF07889.12 gi|530547714|ref|YP_008428246.1| - 0.08 13.0 3.3 0.08 13.0 0.9 2.0 2 1 0 2 2 2 0 Protein of unknown function (DUF1664) CENP-K PF11802.8 gi|530547714|ref|YP_008428246.1| - 0.082 12.5 7.2 0.1 12.2 7.2 1.1 1 0 0 1 1 1 0 Centromere-associated protein K YkyA PF10368.9 gi|530547714|ref|YP_008428246.1| - 0.12 12.1 13.0 0.16 11.7 3.9 2.2 2 0 0 2 2 2 0 Putative cell-wall binding lipoprotein DUF5082 PF16888.5 gi|530547714|ref|YP_008428246.1| - 0.19 12.0 8.3 0.16 12.2 6.0 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF5082) Uso1_p115_C PF04871.13 gi|530547714|ref|YP_008428246.1| - 0.2 12.1 12.5 0.071 13.5 5.8 2.2 2 0 0 2 2 2 0 Uso1 / p115 like vesicle tethering protein, C terminal region FlaC_arch PF05377.11 gi|530547714|ref|YP_008428246.1| - 0.37 11.2 4.3 0.78 10.2 0.8 2.7 2 1 1 3 3 3 0 Flagella accessory protein C (FlaC) Uds1 PF15456.6 gi|530547714|ref|YP_008428246.1| - 0.52 10.5 10.1 3.3 7.9 10.1 2.1 1 1 0 1 1 1 0 Up-regulated During Septation SKA1 PF07160.12 gi|530547714|ref|YP_008428246.1| - 0.56 10.0 8.1 0.048 13.5 2.0 2.0 2 0 0 2 2 2 0 Spindle and kinetochore-associated protein 1 NPV_P10 PF05531.12 gi|530547714|ref|YP_008428246.1| - 0.65 10.5 4.7 2.8 8.5 0.9 2.2 2 0 0 2 2 2 0 Nucleopolyhedrovirus P10 protein PEP-utilisers_N PF05524.13 gi|530547714|ref|YP_008428246.1| - 0.65 10.2 5.7 0.13 12.4 0.7 2.1 2 1 0 2 2 2 0 PEP-utilising enzyme, N-terminal Glutaredoxin2_C PF04399.13 gi|530547714|ref|YP_008428246.1| - 0.82 9.5 4.8 0.15 11.9 0.8 1.8 2 0 0 2 2 2 0 Glutaredoxin 2, C terminal domain DUF724 PF05266.14 gi|530547714|ref|YP_008428246.1| - 0.93 9.3 10.3 0.035 14.0 4.2 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF724) Spc24 PF08286.11 gi|530547714|ref|YP_008428246.1| - 0.99 9.7 10.4 0.11 12.7 1.7 2.3 2 1 0 2 2 2 0 Spc24 subunit of Ndc80 V_ATPase_I PF01496.19 gi|530547714|ref|YP_008428246.1| - 1.1 7.1 5.7 0.071 11.0 0.4 1.6 2 0 0 2 2 2 0 V-type ATPase 116kDa subunit family HAUS-augmin3 PF14932.6 gi|530547714|ref|YP_008428246.1| - 1.5 8.3 17.0 0.61 9.6 3.4 2.0 2 0 0 2 2 2 0 HAUS augmin-like complex subunit 3 ADIP PF11559.8 gi|530547714|ref|YP_008428246.1| - 1.6 8.8 14.7 0.27 11.3 4.2 2.1 2 0 0 2 2 2 0 Afadin- and alpha -actinin-Binding DUF16 PF01519.16 gi|530547714|ref|YP_008428246.1| - 2.2 8.8 9.8 0.094 13.2 1.7 2.1 2 0 0 2 2 2 0 Protein of unknown function DUF16 FliD_N PF02465.18 gi|530547714|ref|YP_008428246.1| - 2.8 8.7 7.4 8.5 7.1 3.6 2.2 1 1 1 2 2 2 0 Flagellar hook-associated protein 2 N-terminus DUF4795 PF16043.5 gi|530547714|ref|YP_008428246.1| - 3.3 7.3 12.1 0.29 10.7 5.5 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4795) XhlA PF10779.9 gi|530547714|ref|YP_008428246.1| - 3.3 8.0 5.1 1.3 9.3 2.1 2.0 2 1 0 2 2 1 0 Haemolysin XhlA DUF2076 PF09849.9 gi|530547714|ref|YP_008428246.1| - 4.8 7.1 10.3 0.73 9.8 5.2 2.0 2 1 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2076) Atg14 PF10186.9 gi|530547714|ref|YP_008428246.1| - 6.1 5.8 9.3 13 4.7 9.3 1.7 1 1 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 TolA_bind_tri PF16331.5 gi|530547714|ref|YP_008428246.1| - 6.6 6.9 16.2 1.8 8.7 4.3 2.6 3 0 0 3 3 2 0 TolA binding protein trimerisation DHR10 PF18595.1 gi|530547714|ref|YP_008428246.1| - 7 6.7 18.2 0.083 13.0 5.4 2.5 2 1 0 2 2 2 0 Designed helical repeat protein 10 domain YabA PF06156.13 gi|530547714|ref|YP_008428246.1| - 9.3 7.0 11.5 0.58 10.8 2.1 2.2 2 0 0 2 2 2 0 Initiation control protein YabA CENP-H PF05837.12 gi|530547714|ref|YP_008428246.1| - 9.9 6.6 11.8 0.88 10.0 2.9 2.2 2 0 0 2 2 2 0 Centromere protein H (CENP-H) Ribosomal_L18A PF01775.17 gi|530547715|ref|YP_008428247.1| - 4.9e-11 42.8 0.2 6e-11 42.5 0.2 1.1 1 0 0 1 1 1 1 Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A eIF-6 PF01912.18 gi|530547716|ref|YP_008428248.1| - 1.2e-68 230.4 0.1 1.5e-68 230.1 0.1 1.1 1 0 0 1 1 1 1 eIF-6 family Ribosomal_L31e PF01198.19 gi|530547717|ref|YP_008428249.1| - 7.4e-13 48.5 1.3 9.2e-13 48.2 1.3 1.1 1 0 0 1 1 1 1 Ribosomal protein L31e Glyco_tranf_2_3 PF13641.6 gi|530547717|ref|YP_008428249.1| - 0.012 15.5 0.1 0.013 15.4 0.1 1.0 1 0 0 1 1 1 0 Glycosyltransferase like family 2 Ribosomal_L39 PF00832.20 gi|530547718|ref|YP_008428250.1| - 2.1e-21 75.3 14.1 2.6e-21 75.0 14.1 1.1 1 0 0 1 1 1 1 Ribosomal L39 protein UPF0258 PF06789.12 gi|530547718|ref|YP_008428250.1| - 0.02 15.0 0.1 0.022 14.9 0.1 1.0 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0258) DAO PF01266.24 gi|530547719|ref|YP_008428251.1| - 2.6e-79 267.4 0.0 3e-79 267.2 0.0 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|530547719|ref|YP_008428251.1| - 2.2e-11 43.5 0.0 3.2e-11 43.0 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.14 gi|530547719|ref|YP_008428251.1| - 7.1e-07 28.7 3.0 2.8e-05 23.5 3.0 2.3 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|530547719|ref|YP_008428251.1| - 2.5e-06 27.0 0.2 0.0009 18.6 0.0 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|530547719|ref|YP_008428251.1| - 2.8e-06 26.7 2.0 0.0003 20.0 0.1 2.4 2 0 0 2 2 2 2 Glucose inhibited division protein A HI0933_like PF03486.14 gi|530547719|ref|YP_008428251.1| - 4.9e-06 25.5 1.4 0.021 13.6 1.0 2.3 2 1 0 2 2 2 2 HI0933-like protein Pyr_redox PF00070.27 gi|530547719|ref|YP_008428251.1| - 6e-06 26.7 1.2 0.0011 19.5 0.1 2.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|530547719|ref|YP_008428251.1| - 2.6e-05 23.6 0.3 0.0072 15.6 0.1 2.2 2 0 0 2 2 2 2 Thi4 family NAD_binding_8 PF13450.6 gi|530547719|ref|YP_008428251.1| - 8.7e-05 22.7 0.1 0.0002 21.5 0.1 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain NAD_binding_7 PF13241.6 gi|530547719|ref|YP_008428251.1| - 0.00018 21.9 0.0 0.00068 20.0 0.0 1.9 1 1 0 1 1 1 1 Putative NAD(P)-binding FAD_oxidored PF12831.7 gi|530547719|ref|YP_008428251.1| - 0.00024 20.6 5.7 0.0065 15.9 5.7 2.3 1 1 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|530547719|ref|YP_008428251.1| - 0.00046 19.6 3.0 0.0013 18.1 1.3 2.1 2 1 0 2 2 2 1 FAD binding domain ApbA PF02558.16 gi|530547719|ref|YP_008428251.1| - 0.0025 17.4 0.1 0.0047 16.6 0.1 1.5 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA 3HCDH_N PF02737.18 gi|530547719|ref|YP_008428251.1| - 0.0038 17.1 0.0 0.0068 16.3 0.0 1.5 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Lycopene_cycl PF05834.12 gi|530547719|ref|YP_008428251.1| - 0.0072 15.4 0.0 0.011 14.8 0.0 1.4 1 0 0 1 1 1 1 Lycopene cyclase protein AlaDh_PNT_C PF01262.21 gi|530547719|ref|YP_008428251.1| - 0.013 14.9 1.0 0.024 13.9 0.3 1.7 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain Shikimate_DH PF01488.20 gi|530547719|ref|YP_008428251.1| - 0.031 14.3 1.3 0.15 12.1 0.2 2.4 2 2 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase NAD_Gly3P_dh_N PF01210.23 gi|530547719|ref|YP_008428251.1| - 0.032 14.2 0.0 0.062 13.3 0.0 1.6 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_9 PF13454.6 gi|530547719|ref|YP_008428251.1| - 0.067 13.2 2.4 0.4 10.7 0.3 2.3 2 0 0 2 2 2 0 FAD-NAD(P)-binding TrkA_N PF02254.18 gi|530547719|ref|YP_008428251.1| - 0.069 13.4 0.4 0.19 12.0 0.4 1.8 1 0 0 1 1 1 0 TrkA-N domain Trp_halogenase PF04820.14 gi|530547719|ref|YP_008428251.1| - 0.071 12.0 0.9 0.24 10.2 0.3 1.9 2 0 0 2 2 2 0 Tryptophan halogenase GMC_oxred_N PF00732.19 gi|530547719|ref|YP_008428251.1| - 0.2 11.0 0.2 1.5 8.1 0.0 2.0 2 0 0 2 2 2 0 GMC oxidoreductase Fer2_BFD PF04324.15 gi|530547720|ref|YP_008428252.1| - 4.4e-14 52.6 2.2 6.8e-14 51.9 2.2 1.3 1 0 0 1 1 1 1 BFD-like [2Fe-2S] binding domain SO_alpha_A3 PF17806.1 gi|530547720|ref|YP_008428252.1| - 3.3e-12 46.6 0.0 3.9e-12 46.3 0.0 1.0 1 0 0 1 1 1 1 Sarcosine oxidase A3 domain Fer4 PF00037.27 gi|530547721|ref|YP_008428253.1| - 3.8e-07 29.6 2.4 3.8e-07 29.6 2.4 2.8 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|530547721|ref|YP_008428253.1| - 4.8e-06 26.4 14.0 6.9e-05 22.8 1.9 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|530547721|ref|YP_008428253.1| - 7.2e-06 26.0 10.5 1.3e-05 25.2 10.5 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|530547721|ref|YP_008428253.1| - 4.3e-05 23.6 9.2 8.8e-05 22.6 9.2 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|530547721|ref|YP_008428253.1| - 5.9e-05 23.6 9.2 5.9e-05 23.6 9.2 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|530547721|ref|YP_008428253.1| - 0.00012 22.0 3.4 0.00012 22.0 3.4 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_10 PF13237.6 gi|530547721|ref|YP_008428253.1| - 0.0003 20.9 13.3 0.00064 19.8 13.4 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|530547721|ref|YP_008428253.1| - 0.00051 20.4 1.6 0.021 15.3 0.0 2.3 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|530547721|ref|YP_008428253.1| - 0.0023 18.8 14.0 0.017 16.1 5.2 2.5 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|530547721|ref|YP_008428253.1| - 0.0052 17.2 0.6 0.0052 17.2 0.6 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_13 PF13370.6 gi|530547721|ref|YP_008428253.1| - 0.0066 17.0 0.3 0.0066 17.0 0.3 2.5 2 1 0 2 2 2 1 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|530547721|ref|YP_008428253.1| - 0.024 15.4 1.1 0.024 15.4 1.1 2.3 2 2 0 2 2 2 0 4Fe-4S single cluster domain Fer4_16 PF13484.6 gi|530547721|ref|YP_008428253.1| - 0.027 15.4 13.3 0.75 10.8 2.1 2.3 1 1 2 3 3 3 0 4Fe-4S double cluster binding domain Fer4_22 PF17179.4 gi|530547721|ref|YP_008428253.1| - 4.2 8.3 10.3 0.76 10.7 1.9 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain Pyr_redox_2 PF07992.14 gi|530547722|ref|YP_008428254.1| - 1.1e-38 133.2 6.9 1.5e-38 132.8 6.9 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Fer2_4 PF13510.6 gi|530547722|ref|YP_008428254.1| - 5.1e-29 100.2 0.1 1.5e-28 98.7 0.0 1.9 2 0 0 2 2 1 1 2Fe-2S iron-sulfur cluster binding domain Pyr_redox_3 PF13738.6 gi|530547722|ref|YP_008428254.1| - 5.5e-17 62.0 2.1 1.9e-14 53.6 2.1 2.2 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|530547722|ref|YP_008428254.1| - 3.1e-15 56.2 9.9 1.3e-08 34.4 0.8 3.5 2 1 1 3 3 3 3 FAD binding domain HI0933_like PF03486.14 gi|530547722|ref|YP_008428254.1| - 3.8e-14 52.2 10.5 8.2e-10 37.9 1.1 3.2 3 0 0 3 3 3 3 HI0933-like protein Pyr_redox PF00070.27 gi|530547722|ref|YP_008428254.1| - 3.4e-13 50.0 8.1 7.5e-06 26.4 0.6 3.8 2 1 1 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|530547722|ref|YP_008428254.1| - 6.2e-13 48.9 0.9 6.2e-13 48.9 0.9 3.4 3 1 1 4 4 3 2 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|530547722|ref|YP_008428254.1| - 3e-11 43.4 2.1 5.8e-06 26.4 0.0 2.7 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain GIDA PF01134.22 gi|530547722|ref|YP_008428254.1| - 2.6e-10 39.9 18.5 8.6e-06 25.1 0.7 4.1 3 1 1 4 4 4 4 Glucose inhibited division protein A FAD_binding_3 PF01494.19 gi|530547722|ref|YP_008428254.1| - 6e-10 38.9 3.6 0.00019 20.8 0.2 2.7 2 0 0 2 2 2 2 FAD binding domain DAO PF01266.24 gi|530547722|ref|YP_008428254.1| - 1e-09 38.5 9.9 0.0016 18.1 0.1 4.0 3 1 1 4 4 4 3 FAD dependent oxidoreductase Thi4 PF01946.17 gi|530547722|ref|YP_008428254.1| - 7.9e-08 31.8 3.2 0.0019 17.5 0.0 3.2 3 0 0 3 3 3 2 Thi4 family NAD_binding_7 PF13241.6 gi|530547722|ref|YP_008428254.1| - 9e-08 32.5 1.6 0.019 15.4 0.2 3.3 3 0 0 3 3 3 2 Putative NAD(P)-binding AlaDh_PNT_C PF01262.21 gi|530547722|ref|YP_008428254.1| - 8e-06 25.3 0.1 8e-06 25.3 0.1 3.1 3 0 0 3 3 3 1 Alanine dehydrogenase/PNT, C-terminal domain Lycopene_cycl PF05834.12 gi|530547722|ref|YP_008428254.1| - 2.6e-05 23.5 2.4 0.011 14.8 0.2 2.4 2 0 0 2 2 2 2 Lycopene cyclase protein ELFV_dehydrog PF00208.21 gi|530547722|ref|YP_008428254.1| - 0.00091 19.0 0.2 0.051 13.3 0.1 2.5 2 0 0 2 2 2 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ApbA PF02558.16 gi|530547722|ref|YP_008428254.1| - 0.0019 17.9 6.1 0.0043 16.7 0.7 3.4 4 0 0 4 4 3 1 Ketopantoate reductase PanE/ApbA TrkA_N PF02254.18 gi|530547722|ref|YP_008428254.1| - 0.015 15.5 0.7 8.7 6.6 0.0 3.2 3 0 0 3 3 2 0 TrkA-N domain K_oxygenase PF13434.6 gi|530547722|ref|YP_008428254.1| - 0.015 14.4 0.1 0.26 10.4 0.0 2.2 2 0 0 2 2 2 0 L-lysine 6-monooxygenase (NADPH-requiring) Amino_oxidase PF01593.24 gi|530547722|ref|YP_008428254.1| - 0.02 14.2 0.0 1.8 7.7 0.0 2.7 3 0 0 3 3 3 0 Flavin containing amine oxidoreductase 3HCDH_N PF02737.18 gi|530547722|ref|YP_008428254.1| - 0.024 14.5 3.0 3.5 7.5 0.3 2.4 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain PALP PF00291.25 gi|530547722|ref|YP_008428254.1| - 0.038 13.4 0.8 0.18 11.2 0.4 2.2 2 0 0 2 2 2 0 Pyridoxal-phosphate dependent enzyme Trp_halogenase PF04820.14 gi|530547722|ref|YP_008428254.1| - 0.078 11.8 4.4 0.19 10.5 0.4 2.3 2 0 0 2 2 2 0 Tryptophan halogenase Fer2_3 PF13085.6 gi|530547722|ref|YP_008428254.1| - 0.091 12.8 0.0 0.16 12.0 0.0 1.4 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain ThiF PF00899.21 gi|530547722|ref|YP_008428254.1| - 0.16 11.3 0.1 0.48 9.7 0.1 1.7 1 0 0 1 1 1 0 ThiF family YdfZ PF14001.6 gi|530547722|ref|YP_008428254.1| - 0.2 12.1 1.6 2.4 8.6 0.0 3.0 3 0 0 3 3 2 0 YdfZ protein DHODB_Fe-S_bind PF10418.9 gi|530547722|ref|YP_008428254.1| - 0.22 11.3 1.8 0.41 10.5 1.8 1.4 1 0 0 1 1 1 0 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B F420_oxidored PF03807.17 gi|530547722|ref|YP_008428254.1| - 0.64 10.6 6.4 0.55 10.9 0.8 3.4 3 1 0 3 3 3 0 NADP oxidoreductase coenzyme F420-dependent NAD_binding_9 PF13454.6 gi|530547722|ref|YP_008428254.1| - 0.99 9.4 6.7 3.8 7.5 0.1 3.7 4 1 1 5 5 5 0 FAD-NAD(P)-binding UDPG_MGDP_dh_N PF03721.14 gi|530547722|ref|YP_008428254.1| - 1.6 8.2 4.9 7.4 6.1 1.5 2.8 2 1 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DAO PF01266.24 gi|530547723|ref|YP_008428255.1| - 1.4e-75 255.1 0.0 1.6e-75 254.9 0.0 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|530547723|ref|YP_008428255.1| - 1.8e-10 40.5 0.0 3.6e-10 39.5 0.0 1.4 1 1 0 1 1 1 1 FAD binding domain NAD_binding_8 PF13450.6 gi|530547723|ref|YP_008428255.1| - 1.1e-06 28.7 0.2 3.2e-06 27.3 0.2 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.6 gi|530547723|ref|YP_008428255.1| - 1.5e-06 27.7 2.0 0.0012 18.1 0.3 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|530547723|ref|YP_008428255.1| - 4.1e-06 26.2 0.6 0.0027 17.0 0.1 2.3 2 0 0 2 2 2 2 Thi4 family FAD_oxidored PF12831.7 gi|530547723|ref|YP_008428255.1| - 2.5e-05 23.8 2.5 0.00058 19.3 2.6 2.2 1 1 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|530547723|ref|YP_008428255.1| - 2.5e-05 23.7 1.6 0.00018 20.8 1.6 2.0 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|530547723|ref|YP_008428255.1| - 8.9e-05 23.0 0.8 0.00068 20.1 0.2 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|530547723|ref|YP_008428255.1| - 0.0001 21.7 0.8 0.00023 20.5 0.5 1.7 2 0 0 2 2 2 1 FAD binding domain HI0933_like PF03486.14 gi|530547723|ref|YP_008428255.1| - 0.00038 19.3 0.4 0.0096 14.7 0.2 2.2 2 0 0 2 2 2 1 HI0933-like protein GIDA PF01134.22 gi|530547723|ref|YP_008428255.1| - 0.0015 17.7 1.7 0.082 12.0 0.1 2.2 2 0 0 2 2 2 1 Glucose inhibited division protein A Lycopene_cycl PF05834.12 gi|530547723|ref|YP_008428255.1| - 0.0034 16.5 0.4 0.0052 15.9 0.4 1.2 1 0 0 1 1 1 1 Lycopene cyclase protein TrkA_N PF02254.18 gi|530547723|ref|YP_008428255.1| - 0.0089 16.3 0.5 0.018 15.3 0.5 1.5 1 0 0 1 1 1 1 TrkA-N domain Trp_halogenase PF04820.14 gi|530547723|ref|YP_008428255.1| - 0.028 13.3 1.0 0.084 11.7 1.0 1.8 1 1 0 1 1 1 0 Tryptophan halogenase NAD_binding_9 PF13454.6 gi|530547723|ref|YP_008428255.1| - 0.055 13.4 0.0 0.14 12.1 0.1 1.7 2 0 0 2 2 2 0 FAD-NAD(P)-binding F420_oxidored PF03807.17 gi|530547723|ref|YP_008428255.1| - 0.08 13.5 0.9 0.24 12.0 0.9 1.9 1 1 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent ApbA PF02558.16 gi|530547723|ref|YP_008428255.1| - 0.096 12.3 0.1 0.18 11.5 0.1 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Amino_oxidase PF01593.24 gi|530547723|ref|YP_008428255.1| - 0.17 11.1 0.0 0.25 10.6 0.0 1.2 1 0 0 1 1 1 0 Flavin containing amine oxidoreductase Pyr_redox_2 PF07992.14 gi|530547724|ref|YP_008428256.1| - 1.6e-20 73.5 0.2 6.2e-13 48.6 0.2 2.4 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Fer2_4 PF13510.6 gi|530547724|ref|YP_008428256.1| - 5.1e-13 48.9 0.0 1.2e-12 47.7 0.0 1.6 1 1 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain SO_alpha_A3 PF17806.1 gi|530547724|ref|YP_008428256.1| - 5.9e-09 36.1 0.0 1e-08 35.4 0.0 1.4 1 0 0 1 1 1 1 Sarcosine oxidase A3 domain FAD_oxidored PF12831.7 gi|530547724|ref|YP_008428256.1| - 9.2e-07 28.6 0.1 1.3e-06 28.0 0.1 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase DAO PF01266.24 gi|530547724|ref|YP_008428256.1| - 4.4e-05 23.2 4.3 0.0033 17.1 3.2 2.3 1 1 1 2 2 2 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|530547724|ref|YP_008428256.1| - 0.0051 17.0 0.0 0.016 15.4 0.0 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.17 gi|530547724|ref|YP_008428256.1| - 0.051 12.8 0.3 0.094 11.9 0.3 1.4 1 0 0 1 1 1 0 Thi4 family FAD_binding_3 PF01494.19 gi|530547724|ref|YP_008428256.1| - 0.068 12.4 0.4 0.1 11.8 0.4 1.2 1 0 0 1 1 1 0 FAD binding domain FAD_binding_2 PF00890.24 gi|530547724|ref|YP_008428256.1| - 0.07 12.2 4.5 0.23 10.5 1.7 2.4 2 1 0 3 3 3 0 FAD binding domain Pyr_redox_3 PF13738.6 gi|530547724|ref|YP_008428256.1| - 0.21 10.8 3.8 2.6 7.2 1.6 2.5 2 1 1 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.6 gi|530547724|ref|YP_008428256.1| - 0.36 10.8 1.2 20 5.2 0.2 2.9 3 0 0 3 3 3 0 FAD-NAD(P)-binding SBBP PF06739.11 gi|530547724|ref|YP_008428256.1| - 0.47 10.5 3.1 10 6.2 0.2 2.4 2 0 0 2 2 2 0 Beta-propeller repeat GIDA PF01134.22 gi|530547724|ref|YP_008428256.1| - 3.6 6.6 8.9 13 4.7 2.2 3.0 2 1 1 3 3 3 0 Glucose inhibited division protein A OCD_Mu_crystall PF02423.15 gi|530547725|ref|YP_008428257.1| - 1.2e-65 221.6 0.1 1.4e-65 221.3 0.1 1.0 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family Shikimate_DH PF01488.20 gi|530547725|ref|YP_008428257.1| - 2.2e-07 31.0 0.3 3.2e-07 30.5 0.3 1.2 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase GFO_IDH_MocA PF01408.22 gi|530547725|ref|YP_008428257.1| - 0.0055 17.5 0.1 0.0086 16.9 0.1 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold F420_oxidored PF03807.17 gi|530547725|ref|YP_008428257.1| - 0.0061 17.1 0.4 0.014 16.0 0.4 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NmrA PF05368.13 gi|530547725|ref|YP_008428257.1| - 0.051 13.1 0.2 0.097 12.2 0.1 1.5 2 0 0 2 2 2 0 NmrA-like family CoA_binding PF02629.19 gi|530547725|ref|YP_008428257.1| - 0.1 13.3 0.1 0.19 12.4 0.1 1.4 1 0 0 1 1 1 0 CoA binding domain DUF1947 PF09183.10 gi|530547725|ref|YP_008428257.1| - 0.68 10.3 3.8 21 5.5 0.1 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF1947) OCD_Mu_crystall PF02423.15 gi|530547726|ref|YP_008428258.1| - 6.2e-21 74.7 0.2 6.7e-21 74.5 0.2 1.0 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family Pro_racemase PF05544.11 gi|530547727|ref|YP_008428259.1| - 1.3e-107 359.6 0.1 1.5e-107 359.5 0.1 1.0 1 0 0 1 1 1 1 Proline racemase PhzC-PhzF PF02567.16 gi|530547727|ref|YP_008428259.1| - 5.7e-07 29.3 0.0 8.9e-07 28.6 0.0 1.2 1 0 0 1 1 1 1 Phenazine biosynthesis-like protein DAP_epimerase PF01678.19 gi|530547727|ref|YP_008428259.1| - 0.00014 22.0 0.1 0.24 11.6 0.0 2.3 2 0 0 2 2 2 2 Diaminopimelate epimerase SNF PF00209.18 gi|530547729|ref|YP_008428261.1| - 8.3e-56 189.7 43.6 3.4e-33 115.1 22.7 2.0 1 1 1 2 2 2 2 Sodium:neurotransmitter symporter family PFL-like PF02901.15 gi|530547730|ref|YP_008428262.1| - 1.7e-224 747.3 0.0 2.2e-224 746.9 0.0 1.1 1 0 0 1 1 1 1 Pyruvate formate lyase-like Gly_radical PF01228.21 gi|530547730|ref|YP_008428262.1| - 3.5e-29 101.4 0.0 1.7e-28 99.2 0.0 2.1 2 0 0 2 2 2 1 Glycine radical DUF3029 PF11230.8 gi|530547730|ref|YP_008428262.1| - 0.031 12.7 0.0 0.73 8.1 0.0 2.9 3 1 0 3 3 3 0 Protein of unknown function (DUF3029) TelA PF05816.11 gi|530547730|ref|YP_008428262.1| - 0.11 11.6 1.7 0.23 10.5 1.7 1.4 1 0 0 1 1 1 0 Toxic anion resistance protein (TelA) Pro_racemase PF05544.11 gi|530547731|ref|YP_008428263.1| - 1.9e-120 401.8 0.0 2.2e-120 401.6 0.0 1.0 1 0 0 1 1 1 1 Proline racemase PrpF PF04303.13 gi|530547731|ref|YP_008428263.1| - 0.00014 21.0 0.0 0.0007 18.7 0.0 1.8 2 0 0 2 2 2 1 PrpF protein PhzC-PhzF PF02567.16 gi|530547731|ref|YP_008428263.1| - 0.00097 18.7 0.0 0.0014 18.1 0.0 1.2 1 0 0 1 1 1 1 Phenazine biosynthesis-like protein DAP_epimerase PF01678.19 gi|530547731|ref|YP_008428263.1| - 0.097 12.9 0.0 0.47 10.6 0.0 1.9 2 0 0 2 2 2 0 Diaminopimelate epimerase Radical_SAM PF04055.21 gi|530547732|ref|YP_008428264.1| - 2.8e-26 92.9 3.0 6.6e-26 91.7 3.0 1.6 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|530547732|ref|YP_008428264.1| - 1.9e-16 60.6 7.0 5.3e-15 55.9 6.6 3.2 1 1 1 2 2 2 1 4Fe-4S single cluster domain Fer4 PF00037.27 gi|530547732|ref|YP_008428264.1| - 2.1e-16 59.0 9.6 1.4e-09 37.4 1.7 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|530547732|ref|YP_008428264.1| - 5.6e-11 42.4 10.6 1.1e-10 41.4 10.6 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|530547732|ref|YP_008428264.1| - 1.5e-10 40.5 10.0 7e-06 25.8 1.7 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|530547732|ref|YP_008428264.1| - 2.2e-10 40.9 12.9 2.2e-10 40.9 12.9 1.7 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|530547732|ref|YP_008428264.1| - 4.5e-10 40.3 6.7 0.00011 23.0 0.1 2.6 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_10 PF13237.6 gi|530547732|ref|YP_008428264.1| - 1.1e-09 38.2 22.3 2.6e-07 30.7 13.1 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|530547732|ref|YP_008428264.1| - 1.3e-09 37.7 14.5 4.2e-06 26.6 1.8 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|530547732|ref|YP_008428264.1| - 1.5e-08 34.7 12.1 1.5e-08 34.7 12.1 1.9 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|530547732|ref|YP_008428264.1| - 8.9e-06 26.2 11.6 0.0054 17.2 2.7 2.7 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_14 PF13394.6 gi|530547732|ref|YP_008428264.1| - 5e-05 23.4 7.2 0.0018 18.4 3.2 2.7 2 1 0 2 2 2 1 4Fe-4S single cluster domain Fer4_15 PF13459.6 gi|530547732|ref|YP_008428264.1| - 0.00011 22.8 6.8 0.00082 20.1 0.4 2.5 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_3 PF12798.7 gi|530547732|ref|YP_008428264.1| - 0.00027 21.6 22.4 0.0049 17.7 6.3 2.6 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_11 PF13247.6 gi|530547732|ref|YP_008428264.1| - 0.002 18.2 3.8 0.002 18.2 3.8 1.7 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|530547732|ref|YP_008428264.1| - 0.0025 18.2 13.0 0.096 13.1 1.2 2.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|530547732|ref|YP_008428264.1| - 0.0032 18.0 15.6 0.22 12.1 2.7 2.5 1 1 3 4 4 4 4 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|530547732|ref|YP_008428264.1| - 0.011 16.2 2.6 0.011 16.2 2.6 2.7 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|530547732|ref|YP_008428264.1| - 0.29 11.4 12.1 1.8 8.8 1.4 2.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|530547732|ref|YP_008428264.1| - 0.77 10.6 13.5 0.19 12.6 2.0 2.4 1 1 1 2 2 2 0 4Fe-4S dicluster domain GDE_C PF06202.14 gi|530547733|ref|YP_008428265.1| - 5.5e-14 51.9 0.0 1.5e-13 50.5 0.0 1.7 1 1 0 1 1 1 1 Amylo-alpha-1,6-glucosidase Glyco_hydro_100 PF12899.7 gi|530547733|ref|YP_008428265.1| - 6.9e-06 25.0 0.0 0.028 13.1 0.0 3.1 3 0 0 3 3 3 2 Alkaline and neutral invertase Bac_rhamnosid6H PF17389.2 gi|530547733|ref|YP_008428265.1| - 4.2e-05 23.0 0.0 5.6e-05 22.5 0.0 1.1 1 0 0 1 1 1 1 Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain GDE_N_bis PF14742.6 gi|530547733|ref|YP_008428265.1| - 0.086 12.4 0.1 0.14 11.7 0.1 1.3 1 0 0 1 1 1 0 N-terminal domain of (some) glycogen debranching enzymes Glyco_hydro_1 PF00232.18 gi|530547734|ref|YP_008428266.1| - 9e-80 268.3 3.8 4.6e-78 262.6 3.8 2.1 1 1 0 1 1 1 1 Glycosyl hydrolase family 1 Cellulase PF00150.18 gi|530547734|ref|YP_008428266.1| - 4.1e-06 26.4 0.0 2.4e-05 23.9 0.0 1.9 2 0 0 2 2 2 1 Cellulase (glycosyl hydrolase family 5) TGS PF02824.21 gi|530547735|ref|YP_008428267.1| - 8.7e-23 80.1 0.0 2.3e-22 78.8 0.0 1.8 1 0 0 1 1 1 1 TGS domain MMR_HSR1 PF01926.23 gi|530547735|ref|YP_008428267.1| - 2.7e-22 79.0 0.0 6.9e-22 77.7 0.0 1.7 1 0 0 1 1 1 1 50S ribosome-binding GTPase MMR_HSR1_Xtn PF16897.5 gi|530547735|ref|YP_008428267.1| - 8.2e-19 67.6 0.1 1.6e-18 66.7 0.1 1.5 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain FeoB_N PF02421.18 gi|530547735|ref|YP_008428267.1| - 2.5e-12 46.6 0.1 4.4e-11 42.5 0.0 2.3 2 0 0 2 2 2 1 Ferrous iron transport protein B YchF-GTPase_C PF06071.13 gi|530547735|ref|YP_008428267.1| - 0.0001 22.4 0.2 0.0086 16.2 0.2 2.6 1 1 0 1 1 1 1 Protein of unknown function (DUF933) MMR_HSR1_C PF08438.10 gi|530547735|ref|YP_008428267.1| - 0.00039 21.0 0.0 0.0013 19.3 0.0 1.9 1 0 0 1 1 1 1 GTPase of unknown function C-terminal RsgA_GTPase PF03193.16 gi|530547735|ref|YP_008428267.1| - 0.0015 18.4 3.6 2.1 8.3 0.2 3.7 2 2 1 3 3 3 2 RsgA GTPase Dynamin_N PF00350.23 gi|530547735|ref|YP_008428267.1| - 0.019 15.0 2.3 5 7.1 0.0 3.2 2 1 0 3 3 3 0 Dynamin family Arf PF00025.21 gi|530547735|ref|YP_008428267.1| - 0.082 12.4 0.2 1.2 8.6 0.1 2.5 1 1 1 2 2 2 0 ADP-ribosylation factor family SRPRB PF09439.10 gi|530547735|ref|YP_008428267.1| - 0.11 11.9 0.2 0.39 10.1 0.0 1.9 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit GTP_EFTU PF00009.27 gi|530547735|ref|YP_008428267.1| - 0.12 11.9 0.5 0.94 9.0 0.2 2.4 1 1 0 1 1 1 0 Elongation factor Tu GTP binding domain Kinase-PPPase PF03618.14 gi|530547735|ref|YP_008428267.1| - 0.21 11.3 0.8 0.79 9.4 0.0 2.3 3 0 0 3 3 3 0 Kinase/pyrophosphorylase Dus PF01207.17 gi|530547735|ref|YP_008428267.1| - 0.21 10.6 1.8 0.41 9.7 0.4 2.0 2 1 1 3 3 3 0 Dihydrouridine synthase (Dus) Myb_DNA-bind_4 PF13837.6 gi|530547735|ref|YP_008428267.1| - 0.53 10.7 4.1 7.7 7.0 0.1 2.8 2 1 1 3 3 3 0 Myb/SANT-like DNA-binding domain AsnC_trans_reg PF01037.21 gi|530547736|ref|YP_008428268.1| - 1.1e-20 73.4 0.2 1.6e-20 72.8 0.2 1.3 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_24 PF13412.6 gi|530547736|ref|YP_008428268.1| - 2.7e-17 62.0 1.7 5e-17 61.2 1.7 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|530547736|ref|YP_008428268.1| - 4.9e-17 61.5 0.5 9.1e-17 60.6 0.1 1.6 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain NapD PF03927.13 gi|530547736|ref|YP_008428268.1| - 3.2e-06 27.1 0.1 5.6e-06 26.3 0.1 1.3 1 0 0 1 1 1 1 NapD protein HTH_IclR PF09339.10 gi|530547736|ref|YP_008428268.1| - 5.4e-06 26.1 0.0 1.7e-05 24.5 0.0 1.7 2 0 0 2 2 2 1 IclR helix-turn-helix domain TrmB PF01978.19 gi|530547736|ref|YP_008428268.1| - 7.6e-06 25.7 0.4 1.5e-05 24.8 0.1 1.5 2 0 0 2 2 1 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.12 gi|530547736|ref|YP_008428268.1| - 3e-05 23.9 0.2 6e-05 22.9 0.2 1.5 1 0 0 1 1 1 1 HTH domain HTH_5 PF01022.20 gi|530547736|ref|YP_008428268.1| - 4.5e-05 23.2 0.1 6.8e-05 22.7 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|530547736|ref|YP_008428268.1| - 0.00016 21.7 0.0 0.00031 20.7 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|530547736|ref|YP_008428268.1| - 0.00027 20.8 0.1 0.00051 20.0 0.1 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain AsnC_trans_reg2 PF17805.1 gi|530547736|ref|YP_008428268.1| - 0.00028 21.0 0.1 0.0012 19.0 0.0 1.9 2 0 0 2 2 2 1 AsnC-like ligand binding domain HTH_28 PF13518.6 gi|530547736|ref|YP_008428268.1| - 0.00049 20.2 0.1 0.0013 18.8 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_Mga PF08280.11 gi|530547736|ref|YP_008428268.1| - 0.0011 18.9 0.3 0.0096 15.9 0.1 2.2 2 0 0 2 2 2 1 M protein trans-acting positive regulator (MGA) HTH domain HTH_23 PF13384.6 gi|530547736|ref|YP_008428268.1| - 0.0022 17.7 0.5 0.0042 16.9 0.1 1.7 2 0 0 2 2 1 1 Homeodomain-like domain MarR PF01047.22 gi|530547736|ref|YP_008428268.1| - 0.0027 17.6 0.2 0.0048 16.8 0.2 1.3 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|530547736|ref|YP_008428268.1| - 0.0037 17.7 0.1 0.0064 17.0 0.1 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain LexA_DNA_bind PF01726.16 gi|530547736|ref|YP_008428268.1| - 0.0087 15.8 0.2 0.018 14.8 0.2 1.6 1 1 0 1 1 1 1 LexA DNA binding domain Mga PF05043.13 gi|530547736|ref|YP_008428268.1| - 0.016 15.8 0.4 0.093 13.3 0.1 2.0 1 1 1 2 2 2 0 Mga helix-turn-helix domain Rrf2 PF02082.20 gi|530547736|ref|YP_008428268.1| - 0.02 15.2 0.5 0.28 11.5 0.1 2.5 3 0 0 3 3 3 0 Transcriptional regulator RepL PF05732.11 gi|530547736|ref|YP_008428268.1| - 0.021 14.3 0.0 0.034 13.6 0.0 1.3 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) MarR_2 PF12802.7 gi|530547736|ref|YP_008428268.1| - 0.027 14.4 0.0 0.05 13.5 0.0 1.4 1 0 0 1 1 1 0 MarR family HTH_36 PF13730.6 gi|530547736|ref|YP_008428268.1| - 0.033 14.1 0.1 0.054 13.5 0.1 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain Fe_dep_repress PF01325.19 gi|530547736|ref|YP_008428268.1| - 0.041 14.1 0.1 0.093 12.9 0.1 1.6 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_10 PF04967.12 gi|530547736|ref|YP_008428268.1| - 0.046 13.5 0.0 0.11 12.3 0.0 1.6 1 0 0 1 1 1 0 HTH DNA binding domain FUR PF01475.19 gi|530547736|ref|YP_008428268.1| - 0.065 13.4 0.1 0.14 12.3 0.0 1.7 1 1 0 1 1 1 0 Ferric uptake regulator family Sigma70_r4_2 PF08281.12 gi|530547736|ref|YP_008428268.1| - 0.066 12.9 2.8 0.78 9.5 0.3 2.5 2 1 0 2 2 2 0 Sigma-70, region 4 HTH_40 PF14493.6 gi|530547736|ref|YP_008428268.1| - 0.073 13.5 0.4 0.14 12.7 0.4 1.8 1 1 0 1 1 1 0 Helix-turn-helix domain P2 PF07194.11 gi|530547736|ref|YP_008428268.1| - 0.085 12.9 0.6 0.18 11.9 0.3 1.8 1 1 1 2 2 2 0 P2 response regulator binding domain HTH_9 PF08221.11 gi|530547736|ref|YP_008428268.1| - 0.087 12.9 0.0 0.19 11.9 0.0 1.6 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_50 PF18024.1 gi|530547736|ref|YP_008428268.1| - 0.54 9.9 2.5 0.66 9.6 0.1 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain ASCH PF04266.14 gi|530547737|ref|YP_008428269.1| - 3.7e-23 82.1 1.1 6e-23 81.5 1.1 1.3 1 0 0 1 1 1 1 ASCH domain HAD_2 PF13419.6 gi|530547738|ref|YP_008428270.1| - 3.3e-33 115.2 0.0 4.8e-33 114.7 0.0 1.2 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|530547738|ref|YP_008428270.1| - 4.4e-20 72.9 0.0 1e-18 68.4 0.0 2.2 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|530547738|ref|YP_008428270.1| - 2.4e-16 59.5 0.0 4.7e-16 58.6 0.0 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.7 gi|530547738|ref|YP_008428270.1| - 5.6e-07 30.2 0.0 7.8e-07 29.7 0.0 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase PGP_phosphatase PF09419.10 gi|530547738|ref|YP_008428270.1| - 0.00025 20.7 0.0 0.0014 18.3 0.0 2.0 2 0 0 2 2 2 1 Mitochondrial PGP phosphatase 5_nucleotid PF05761.14 gi|530547738|ref|YP_008428270.1| - 0.054 12.4 0.0 2.3 7.0 0.0 2.5 2 1 1 3 3 3 0 5' nucleotidase family Hydrolase_3 PF08282.12 gi|530547738|ref|YP_008428270.1| - 0.078 12.7 0.0 0.47 10.2 0.0 2.1 2 0 0 2 2 2 0 haloacid dehalogenase-like hydrolase PNK3P PF08645.11 gi|530547738|ref|YP_008428270.1| - 0.12 12.0 0.1 0.79 9.4 0.0 2.3 2 1 0 2 2 2 0 Polynucleotide kinase 3 phosphatase DUF3783 PF12646.7 gi|530547739|ref|YP_008428271.1| - 2.7e-19 68.8 0.2 1.1e-18 66.9 0.0 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF3783) SIR2 PF02146.17 gi|530547740|ref|YP_008428272.1| - 8.3e-60 201.7 0.0 1e-59 201.5 0.0 1.1 1 0 0 1 1 1 1 Sir2 family Zn-ribbon_8 PF09723.10 gi|530547740|ref|YP_008428272.1| - 0.00087 19.3 0.5 0.0022 18.1 0.5 1.6 1 0 0 1 1 1 1 Zinc ribbon domain TPP_enzyme_M PF00205.22 gi|530547740|ref|YP_008428272.1| - 0.011 15.4 0.0 0.071 12.9 0.0 2.0 2 0 0 2 2 2 0 Thiamine pyrophosphate enzyme, central domain DUF2250 PF10007.9 gi|530547740|ref|YP_008428272.1| - 0.053 13.6 0.1 0.093 12.8 0.1 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) ATP-grasp_3 PF02655.14 gi|530547740|ref|YP_008428272.1| - 0.056 13.5 0.0 0.088 12.9 0.0 1.3 1 0 0 1 1 1 0 ATP-grasp domain RNA_POL_M_15KD PF02150.16 gi|530547740|ref|YP_008428272.1| - 0.092 12.6 1.8 2.4 8.1 0.1 2.4 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit HypA PF01155.19 gi|530547740|ref|YP_008428272.1| - 0.14 12.2 0.1 0.32 11.0 0.0 1.6 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-RING_7 PF02591.15 gi|530547740|ref|YP_008428272.1| - 0.15 12.3 0.8 0.29 11.4 0.1 1.9 2 0 0 2 2 2 0 C4-type zinc ribbon domain zf-ribbon_3 PF13248.6 gi|530547740|ref|YP_008428272.1| - 0.19 11.2 0.3 0.19 11.2 0.3 1.9 2 0 0 2 2 2 0 zinc-ribbon domain A1_Propeptide PF07966.12 gi|530547740|ref|YP_008428272.1| - 0.45 10.4 1.7 4.7 7.2 0.8 2.5 2 0 0 2 2 2 0 A1 Propeptide SHMT PF00464.19 gi|530547741|ref|YP_008428273.1| - 1.5e-80 270.8 0.0 1.9e-80 270.4 0.0 1.0 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Aminotran_1_2 PF00155.21 gi|530547741|ref|YP_008428273.1| - 3.7e-11 42.8 0.0 5.7e-11 42.2 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.19 gi|530547741|ref|YP_008428273.1| - 7.4e-08 31.7 0.2 1.1e-07 31.1 0.2 1.4 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|530547741|ref|YP_008428273.1| - 1.3e-07 31.2 0.0 2.9e-07 30.1 0.0 1.5 1 1 0 1 1 1 1 Beta-eliminating lyase SelA PF03841.13 gi|530547741|ref|YP_008428273.1| - 0.00029 19.9 0.0 0.0012 17.9 0.0 1.8 2 0 0 2 2 2 1 L-seryl-tRNA selenium transferase Cys_Met_Meta_PP PF01053.20 gi|530547741|ref|YP_008428273.1| - 0.00035 19.2 0.0 0.0012 17.4 0.0 1.9 1 1 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.17 gi|530547741|ref|YP_008428273.1| - 0.0034 16.7 0.1 0.0051 16.2 0.1 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family CheD PF03975.13 gi|530547741|ref|YP_008428273.1| - 0.021 14.9 0.1 0.046 13.8 0.1 1.5 1 0 0 1 1 1 0 CheD chemotactic sensory transduction DUF3243 PF11588.8 gi|530547741|ref|YP_008428273.1| - 0.095 13.0 0.2 0.39 11.1 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3243) UbiD PF01977.16 gi|530547743|ref|YP_008428275.1| - 4.6e-97 325.5 0.1 5.6e-97 325.2 0.1 1.0 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase ResIII PF04851.15 gi|530547744|ref|YP_008428276.1| - 3.4e-18 66.2 0.0 1.1e-17 64.6 0.0 1.9 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit Helicase_C PF00271.31 gi|530547744|ref|YP_008428276.1| - 6e-13 49.1 0.1 3.2e-12 46.8 0.0 2.2 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DEAD PF00270.29 gi|530547744|ref|YP_008428276.1| - 5e-06 26.4 2.7 3.6e-05 23.6 0.1 3.2 3 1 0 3 3 3 1 DEAD/DEAH box helicase SWI2_SNF2 PF18766.1 gi|530547744|ref|YP_008428276.1| - 8.6e-05 22.3 0.0 0.00024 20.9 0.0 1.8 1 1 0 1 1 1 1 SWI2/SNF2 ATPase DUF2075 PF09848.9 gi|530547744|ref|YP_008428276.1| - 0.027 13.7 0.0 0.049 12.9 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Helicase_C_2 PF13307.6 gi|530547744|ref|YP_008428276.1| - 0.2 11.8 0.3 20 5.3 0.0 2.6 2 0 0 2 2 2 0 Helicase C-terminal domain PseudoU_synth_1 PF01416.20 gi|530547745|ref|YP_008428277.1| - 3.3e-27 95.1 0.0 3.6e-22 78.9 0.0 2.1 2 0 0 2 2 2 2 tRNA pseudouridine synthase Fumarate_red_C PF02300.17 gi|530547745|ref|YP_008428277.1| - 0.034 14.2 0.0 0.056 13.5 0.0 1.4 1 0 0 1 1 1 0 Fumarate reductase subunit C tRNA_synthFbeta PF17759.1 gi|530547747|ref|YP_008428279.1| - 1.1e-49 168.8 0.1 2e-49 167.9 0.1 1.4 1 0 0 1 1 1 1 Phenylalanyl tRNA synthetase beta chain CLM domain B5 PF03484.15 gi|530547747|ref|YP_008428279.1| - 3.3e-15 56.1 4.5 1.4e-14 54.1 0.4 2.9 3 0 0 3 3 3 1 tRNA synthetase B5 domain B3_4 PF03483.17 gi|530547747|ref|YP_008428279.1| - 4.6e-13 49.2 0.0 7.8e-13 48.5 0.0 1.4 1 0 0 1 1 1 1 B3/4 domain PhetRS_B1 PF18262.1 gi|530547747|ref|YP_008428279.1| - 6.4e-08 32.7 3.7 1.3e-06 28.5 0.0 4.0 4 1 0 4 4 4 1 Phe-tRNA synthetase beta subunit B1 domain tRNA-synt_2d PF01409.20 gi|530547747|ref|YP_008428279.1| - 0.00022 20.8 0.3 0.00086 18.9 0.3 2.0 1 1 0 1 1 1 1 tRNA synthetases class II core domain (F) Fe-ADH PF00465.19 gi|530547748|ref|YP_008428280.1| - 6.5e-94 314.7 0.1 7.4e-94 314.5 0.1 1.0 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH_2 PF13685.6 gi|530547748|ref|YP_008428280.1| - 5.4e-12 45.9 0.0 4.2e-07 29.9 0.0 2.1 2 0 0 2 2 2 2 Iron-containing alcohol dehydrogenase NGP1NT PF08153.12 gi|530547748|ref|YP_008428280.1| - 0.012 15.7 0.0 0.021 15.0 0.0 1.3 1 0 0 1 1 1 0 NGP1NT (NUC091) domain KH_8 PF17903.1 gi|530547748|ref|YP_008428280.1| - 0.057 13.5 0.0 0.12 12.4 0.0 1.5 1 0 0 1 1 1 0 Krr1 KH1 domain tRNA-synt_2d PF01409.20 gi|530547749|ref|YP_008428281.1| - 2.3e-83 279.4 0.0 3.1e-83 279.0 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) tRNA_synthFbeta PF17759.1 gi|530547749|ref|YP_008428281.1| - 0.00047 19.7 0.0 0.69 9.3 0.0 2.5 2 0 0 2 2 2 2 Phenylalanyl tRNA synthetase beta chain CLM domain tRNA-synt_2 PF00152.20 gi|530547749|ref|YP_008428281.1| - 0.0025 16.9 0.0 0.66 9.0 0.0 2.5 2 0 0 2 2 2 2 tRNA synthetases class II (D, K and N) TrmB PF01978.19 gi|530547749|ref|YP_008428281.1| - 0.023 14.6 2.7 1.6 8.7 0.1 3.9 4 0 0 4 4 4 0 Sugar-specific transcriptional regulator TrmB AbiEi_4 PF13338.6 gi|530547749|ref|YP_008428281.1| - 0.028 14.6 0.3 0.14 12.3 0.3 2.3 1 0 0 1 1 1 0 Transcriptional regulator, AbiEi antitoxin HTH_27 PF13463.6 gi|530547749|ref|YP_008428281.1| - 0.045 14.3 1.3 2 9.0 0.3 3.2 3 0 0 3 3 3 0 Winged helix DNA-binding domain TFIIE_alpha PF02002.17 gi|530547749|ref|YP_008428281.1| - 0.06 13.2 6.3 12 5.9 0.1 3.6 2 1 1 3 3 3 0 TFIIE alpha subunit DUF2582 PF10771.9 gi|530547749|ref|YP_008428281.1| - 0.4 10.9 3.7 9.2 6.5 0.1 2.8 3 0 0 3 3 3 0 Winged helix-turn-helix domain (DUF2582) ADH_N PF08240.12 gi|530547750|ref|YP_008428282.1| - 6.3e-36 122.6 2.7 6.3e-36 122.6 2.7 1.6 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|530547750|ref|YP_008428282.1| - 2e-31 108.7 0.0 4.6e-31 107.5 0.0 1.7 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Glu_dehyd_C PF16912.5 gi|530547750|ref|YP_008428282.1| - 1.5e-10 40.9 0.0 2.5e-10 40.2 0.0 1.3 1 0 0 1 1 1 1 Glucose dehydrogenase C-terminus ADH_zinc_N_2 PF13602.6 gi|530547750|ref|YP_008428282.1| - 7.3e-09 36.8 0.0 1.4e-08 35.8 0.0 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N_2 PF16884.5 gi|530547750|ref|YP_008428282.1| - 0.0016 18.3 0.0 0.0038 17.1 0.0 1.6 1 0 0 1 1 1 1 N-terminal domain of oxidoreductase AlaDh_PNT_C PF01262.21 gi|530547750|ref|YP_008428282.1| - 0.05 12.9 0.2 0.09 12.1 0.2 1.4 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain UPF0146 PF03686.13 gi|530547750|ref|YP_008428282.1| - 0.079 12.8 0.8 1.7 8.5 0.0 2.6 2 1 0 2 2 2 0 Uncharacterised protein family (UPF0146) NAD_binding_7 PF13241.6 gi|530547750|ref|YP_008428282.1| - 0.13 12.7 0.1 0.24 11.8 0.1 1.5 1 0 0 1 1 1 0 Putative NAD(P)-binding TRAM PF01938.20 gi|530547751|ref|YP_008428283.1| - 1.6e-13 50.4 2.5 2.3e-13 49.9 2.5 1.2 1 0 0 1 1 1 1 TRAM domain CbiA PF01656.23 gi|530547752|ref|YP_008428284.1| - 1.5e-19 70.3 0.0 2.2e-19 69.7 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|530547752|ref|YP_008428284.1| - 4e-14 52.9 0.0 6.9e-14 52.2 0.0 1.3 1 0 0 1 1 1 1 AAA domain ParA PF10609.9 gi|530547752|ref|YP_008428284.1| - 7.9e-09 35.3 0.0 8.1e-06 25.5 0.0 2.2 2 0 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase CBP_BcsQ PF06564.12 gi|530547752|ref|YP_008428284.1| - 1.2e-08 34.7 0.0 1.2e-06 28.2 0.0 2.2 2 1 0 2 2 2 1 Cellulose biosynthesis protein BcsQ Fer4_NifH PF00142.18 gi|530547752|ref|YP_008428284.1| - 2.2e-08 33.9 0.1 0.0016 17.9 0.0 2.1 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ArsA_ATPase PF02374.15 gi|530547752|ref|YP_008428284.1| - 1.8e-07 30.6 0.0 6.6e-07 28.8 0.0 1.8 1 1 0 1 1 1 1 Anion-transporting ATPase SRP54 PF00448.22 gi|530547752|ref|YP_008428284.1| - 8.2e-05 22.3 0.0 0.00017 21.3 0.0 1.5 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain KTI12 PF08433.10 gi|530547752|ref|YP_008428284.1| - 0.001 18.6 0.0 0.0016 18.0 0.0 1.3 1 0 0 1 1 1 1 Chromatin associated protein KTI12 GTP_EFTU PF00009.27 gi|530547752|ref|YP_008428284.1| - 0.002 17.7 0.1 0.64 9.5 0.0 2.2 2 0 0 2 2 2 2 Elongation factor Tu GTP binding domain APS_kinase PF01583.20 gi|530547752|ref|YP_008428284.1| - 0.0022 17.9 0.0 0.0085 16.0 0.0 1.9 2 0 0 2 2 2 1 Adenylylsulphate kinase AAA_26 PF13500.6 gi|530547752|ref|YP_008428284.1| - 0.0029 17.5 0.9 0.027 14.3 0.1 2.1 2 0 0 2 2 2 1 AAA domain DUF1611 PF07755.11 gi|530547752|ref|YP_008428284.1| - 0.0089 15.3 0.4 0.042 13.1 0.0 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF1611_C) P-loop domain PRK PF00485.18 gi|530547752|ref|YP_008428284.1| - 0.021 14.5 0.0 0.04 13.7 0.0 1.4 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA_25 PF13481.6 gi|530547752|ref|YP_008428284.1| - 0.022 14.3 0.2 0.11 12.1 0.1 2.1 2 1 0 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|530547752|ref|YP_008428284.1| - 0.04 13.6 0.1 0.082 12.6 0.1 1.6 1 1 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|530547752|ref|YP_008428284.1| - 0.05 12.9 0.0 0.09 12.0 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin AAA_28 PF13521.6 gi|530547752|ref|YP_008428284.1| - 0.11 12.7 0.0 0.5 10.6 0.0 1.9 2 0 0 2 2 2 0 AAA domain T2SSE PF00437.20 gi|530547752|ref|YP_008428284.1| - 0.14 11.1 0.1 0.23 10.5 0.1 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_30 PF13604.6 gi|530547752|ref|YP_008428284.1| - 0.16 11.7 0.0 0.25 11.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|530547752|ref|YP_008428284.1| - 0.17 11.0 0.2 2.7 7.1 0.1 2.1 2 0 0 2 2 2 0 NB-ARC domain AAA_22 PF13401.6 gi|530547752|ref|YP_008428284.1| - 0.22 11.8 0.0 0.67 10.2 0.0 1.8 2 0 0 2 2 2 0 AAA domain NTPase_1 PF03266.15 gi|530547752|ref|YP_008428284.1| - 0.32 10.9 1.9 0.86 9.5 0.2 2.2 2 0 0 2 2 2 0 NTPase HMG-CoA_red PF00368.18 gi|530547753|ref|YP_008428285.1| - 4.3e-140 466.9 1.4 4.8e-140 466.7 1.4 1.0 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A reductase Ferlin_C PF16165.5 gi|530547754|ref|YP_008428286.1| - 0.089 12.7 0.4 0.089 12.7 0.4 1.7 2 0 0 2 2 2 0 Ferlin C-terminus DUF2070 PF09843.9 gi|530547754|ref|YP_008428286.1| - 0.11 10.8 0.3 0.19 10.0 0.3 1.3 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) YtpI PF14007.6 gi|530547755|ref|YP_008428287.1| - 0.03 14.5 2.9 0.64 10.2 0.5 2.3 1 1 1 2 2 2 0 YtpI-like protein GatB_N PF02934.15 gi|530547756|ref|YP_008428288.1| - 2.7e-65 220.5 0.0 5e-65 219.6 0.0 1.5 1 1 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.18 gi|530547756|ref|YP_008428288.1| - 3.3e-26 91.9 10.8 1.1e-25 90.2 6.4 3.1 3 0 0 3 3 3 1 GatB domain GAD PF02938.14 gi|530547756|ref|YP_008428288.1| - 1.7e-17 63.4 2.3 3.3e-17 62.5 0.2 2.6 2 1 0 2 2 2 1 GAD domain YqeY PF09424.10 gi|530547756|ref|YP_008428288.1| - 7.5e-10 39.0 3.2 1.1e-09 38.5 1.5 2.3 2 0 0 2 2 2 1 Yqey-like protein NAD_Gly3P_dh_N PF01210.23 gi|530547756|ref|YP_008428288.1| - 0.089 12.8 0.7 0.56 10.2 0.4 2.4 2 1 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus FliG_C PF01706.16 gi|530547756|ref|YP_008428288.1| - 1.9 8.7 6.4 1.6 8.9 0.1 3.8 6 0 0 6 6 6 0 FliG C-terminal domain Asparaginase PF00710.20 gi|530547757|ref|YP_008428289.1| - 9.2e-61 204.7 0.1 2.1e-60 203.6 0.0 1.6 2 0 0 2 2 2 1 Asparaginase, N-terminal Asparaginase_C PF17763.1 gi|530547757|ref|YP_008428289.1| - 4.1e-37 126.9 0.1 8.8e-37 125.8 0.0 1.6 2 0 0 2 2 2 1 Glutaminase/Asparaginase C-terminal domain GatD_N PF18195.1 gi|530547757|ref|YP_008428289.1| - 6.1e-19 67.1 2.5 1.4e-18 66.0 2.5 1.6 1 0 0 1 1 1 1 GatD N-terminal domain DUF1460 PF07313.12 gi|530547757|ref|YP_008428289.1| - 0.14 11.5 0.0 0.25 10.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1460) DZR PF12773.7 gi|530547758|ref|YP_008428290.1| - 0.016 15.2 0.3 0.024 14.7 0.3 1.2 1 0 0 1 1 1 0 Double zinc ribbon HypA PF01155.19 gi|530547758|ref|YP_008428290.1| - 0.043 13.8 0.9 0.063 13.3 0.9 1.3 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn-ribbon_8 PF09723.10 gi|530547758|ref|YP_008428290.1| - 0.046 13.9 2.1 0.08 13.1 2.1 1.3 1 0 0 1 1 1 0 Zinc ribbon domain ADK_lid PF05191.14 gi|530547758|ref|YP_008428290.1| - 0.053 13.5 0.5 0.093 12.7 0.5 1.4 1 0 0 1 1 1 0 Adenylate kinase, active site lid Rubredoxin_2 PF18073.1 gi|530547758|ref|YP_008428290.1| - 0.058 13.1 4.5 0.2 11.4 4.5 1.8 1 1 0 1 1 1 0 Rubredoxin metal binding domain zinc_ribbon_4 PF13717.6 gi|530547758|ref|YP_008428290.1| - 0.14 12.1 4.6 2.5 8.1 0.6 2.4 2 0 0 2 2 2 0 zinc-ribbon domain UPF0547 PF10571.9 gi|530547758|ref|YP_008428290.1| - 0.29 11.3 7.8 0.29 11.2 0.4 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 PhnA_Zn_Ribbon PF08274.12 gi|530547758|ref|YP_008428290.1| - 0.4 10.7 0.3 0.4 10.7 0.3 2.0 2 0 0 2 2 2 0 PhnA Zinc-Ribbon HalOD2 PF18547.1 gi|530547758|ref|YP_008428290.1| - 1.2 9.1 3.2 6.3 6.8 0.4 2.2 2 0 0 2 2 2 0 Halobacterial output domain 2 DUF35_N PF12172.8 gi|530547758|ref|YP_008428290.1| - 3.3 7.7 6.4 93 3.0 6.4 2.2 1 1 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) THUMP PF02926.17 gi|530547759|ref|YP_008428291.1| - 6e-11 42.6 0.4 6e-11 42.6 0.4 2.6 2 1 0 2 2 2 1 THUMP domain Ribosomal_L21e PF01157.18 gi|530547760|ref|YP_008428292.1| - 1.7e-34 117.7 1.1 1.9e-34 117.5 1.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L21e RNA_pol_Rpb4 PF03874.16 gi|530547761|ref|YP_008428293.1| - 9.4e-09 35.6 1.0 1.6e-08 34.9 1.0 1.3 1 1 0 1 1 1 1 RNA polymerase Rpb4 DUF655 PF04919.12 gi|530547762|ref|YP_008428294.1| - 3.2e-69 232.5 0.4 4e-69 232.2 0.4 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF655) HHH_6 PF14579.6 gi|530547762|ref|YP_008428294.1| - 3.9e-05 23.8 0.0 7.6e-05 22.9 0.0 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_3 PF12836.7 gi|530547762|ref|YP_008428294.1| - 0.0012 19.0 0.0 0.0029 17.8 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix motif RrnaAD PF00398.20 gi|530547763|ref|YP_008428295.1| - 1.3e-59 201.4 0.5 1.5e-59 201.2 0.5 1.0 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_25 PF13649.6 gi|530547763|ref|YP_008428295.1| - 4.4e-08 33.7 0.0 1.1e-07 32.4 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|530547763|ref|YP_008428295.1| - 4.3e-06 27.3 0.0 1.2e-05 25.9 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|530547763|ref|YP_008428295.1| - 3.9e-05 23.3 0.0 8.9e-05 22.1 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase small domain Methyltransf_31 PF13847.6 gi|530547763|ref|YP_008428295.1| - 0.00034 20.5 0.0 0.00064 19.5 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|530547763|ref|YP_008428295.1| - 0.00062 19.6 0.0 0.0012 18.7 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain DREV PF05219.12 gi|530547763|ref|YP_008428295.1| - 0.0033 16.6 0.0 0.012 14.8 0.0 1.9 2 0 0 2 2 2 1 DREV methyltransferase Met_10 PF02475.16 gi|530547763|ref|YP_008428295.1| - 0.046 13.5 0.0 0.08 12.7 0.0 1.4 1 0 0 1 1 1 0 Met-10+ like-protein Methyltransf_12 PF08242.12 gi|530547763|ref|YP_008428295.1| - 0.047 14.4 0.0 0.11 13.3 0.0 1.7 1 0 0 1 1 1 0 Methyltransferase domain TrkA_N PF02254.18 gi|530547763|ref|YP_008428295.1| - 0.073 13.3 0.0 0.24 11.6 0.0 1.8 1 0 0 1 1 1 0 TrkA-N domain PCMT PF01135.19 gi|530547763|ref|YP_008428295.1| - 0.097 12.4 0.0 0.22 11.3 0.0 1.6 2 0 0 2 2 2 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) UPF0020 PF01170.18 gi|530547763|ref|YP_008428295.1| - 0.14 11.9 0.0 0.27 10.9 0.0 1.5 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 Rubrerythrin PF02915.17 gi|530547764|ref|YP_008428296.1| - 2.7e-14 53.7 8.1 3.6e-14 53.3 8.1 1.2 1 0 0 1 1 1 1 Rubrerythrin FCH PF00611.23 gi|530547764|ref|YP_008428296.1| - 0.023 15.0 2.3 0.19 12.0 0.3 2.3 2 0 0 2 2 2 0 Fes/CIP4, and EFC/F-BAR homology domain Ferritin_2 PF13668.6 gi|530547764|ref|YP_008428296.1| - 0.038 14.2 0.9 0.17 12.0 0.9 1.9 1 1 0 1 1 1 0 Ferritin-like domain Acetyltransf_11 PF13720.6 gi|530547764|ref|YP_008428296.1| - 0.04 14.4 1.6 3.7 8.1 0.1 2.9 1 1 2 3 3 3 0 Udp N-acetylglucosamine O-acyltransferase; Domain 2 FAD_SOX PF18371.1 gi|530547764|ref|YP_008428296.1| - 0.072 13.4 2.4 0.33 11.3 0.2 2.4 1 1 2 3 3 3 0 Flavin adenine dinucleotide (FAD)-dependent sulfhydryl oxidase DUF4535 PF15054.6 gi|530547764|ref|YP_008428296.1| - 0.15 11.8 1.8 0.36 10.6 0.2 2.4 3 1 1 4 4 4 0 Domain of unknown function (DUF4535) zf-C4H2 PF10146.9 gi|530547764|ref|YP_008428296.1| - 4.4 7.5 5.3 0.77 10.0 0.7 1.9 2 0 0 2 2 2 0 Zinc finger-containing protein S_layer_N PF05123.12 gi|530547766|ref|YP_008428298.1| - 6.3e-42 144.4 23.1 6.3e-42 144.4 23.1 2.7 2 1 0 2 2 2 1 S-layer like family, N-terminal region S_layer_C PF05124.12 gi|530547766|ref|YP_008428298.1| - 8.3e-37 127.3 8.6 8.3e-37 127.3 8.6 2.1 2 1 1 3 3 3 1 S-layer like family, C-terminal region P22_Tail-4 PF11650.8 gi|530547766|ref|YP_008428298.1| - 0.0076 16.2 2.0 0.016 15.2 0.5 2.5 2 1 0 2 2 2 1 P22 tail accessory factor GSH_synth_ATP PF03917.17 gi|530547766|ref|YP_008428298.1| - 0.078 11.7 0.0 0.11 11.2 0.0 1.2 1 0 0 1 1 1 0 Eukaryotic glutathione synthase, ATP binding domain Lipase_GDSL_3 PF14606.6 gi|530547767|ref|YP_008428299.1| - 0.066 13.4 1.4 0.67 10.1 0.3 2.1 2 0 0 2 2 2 0 GDSL-like Lipase/Acylhydrolase family Radical_SAM PF04055.21 gi|530547768|ref|YP_008428300.1| - 1.5e-23 84.0 1.4 1.2e-21 77.9 0.1 2.6 3 0 0 3 3 3 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|530547768|ref|YP_008428300.1| - 2.5e-07 31.0 0.1 5.2e-07 30.0 0.1 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain ADK_lid PF05191.14 gi|530547768|ref|YP_008428300.1| - 0.0029 17.6 0.5 0.92 9.5 0.0 2.5 2 0 0 2 2 2 2 Adenylate kinase, active site lid DiS_P_DiS PF06750.13 gi|530547768|ref|YP_008428300.1| - 0.0045 17.1 0.1 0.0045 17.1 0.1 1.8 2 0 0 2 2 2 1 Bacterial Peptidase A24 N-terminal domain zf-C4_Topoisom PF01396.19 gi|530547768|ref|YP_008428300.1| - 0.012 15.4 1.2 0.32 10.8 0.0 2.7 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger DZR PF12773.7 gi|530547768|ref|YP_008428300.1| - 0.015 15.3 1.9 0.03 14.3 0.1 2.3 2 0 0 2 2 2 0 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|530547768|ref|YP_008428300.1| - 0.081 12.7 0.6 0.081 12.7 0.6 2.8 3 0 0 3 3 3 0 zinc-ribbon domain ribosomal_L24 PF17136.4 gi|530547768|ref|YP_008428300.1| - 0.22 11.9 0.4 1.4 9.4 0.1 2.5 3 0 0 3 3 3 0 Ribosomal proteins 50S L24/mitochondrial 39S L24 zf_C2H2_13 PF18508.1 gi|530547768|ref|YP_008428300.1| - 0.43 10.2 3.7 7.2 6.3 0.5 2.6 2 0 0 2 2 2 0 Zinc finger domain zf-ribbon_3 PF13248.6 gi|530547768|ref|YP_008428300.1| - 1.6 8.3 11.0 0.23 10.9 0.2 2.8 3 0 0 3 3 3 0 zinc-ribbon domain ABC2_membrane_3 PF12698.7 gi|530547769|ref|YP_008428301.1| - 9.5e-09 34.8 22.1 1.6e-08 34.1 22.1 1.3 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|530547769|ref|YP_008428301.1| - 2.1e-05 24.5 17.2 7.1e-05 22.8 16.3 2.1 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|530547769|ref|YP_008428301.1| - 0.16 11.2 17.9 0.08 12.2 12.3 2.1 1 1 1 2 2 2 0 ABC-2 family transporter protein DUF3290 PF11694.8 gi|530547769|ref|YP_008428301.1| - 7.5 6.5 6.5 1 9.4 0.9 2.2 2 1 1 3 3 3 0 Protein of unknown function (DUF3290) ABC2_membrane_3 PF12698.7 gi|530547770|ref|YP_008428302.1| - 2.7e-06 26.7 18.3 5.5e-06 25.7 18.3 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|530547770|ref|YP_008428302.1| - 0.00047 19.6 12.4 0.00047 19.6 12.4 2.1 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_4 PF12730.7 gi|530547770|ref|YP_008428302.1| - 0.0048 16.9 7.9 0.0048 16.9 7.9 2.0 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC_tran PF00005.27 gi|530547771|ref|YP_008428303.1| - 8.4e-28 97.6 0.0 1.3e-27 97.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|530547771|ref|YP_008428303.1| - 1.2e-14 54.8 0.1 3e-10 40.4 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|530547771|ref|YP_008428303.1| - 8e-06 25.8 0.0 0.051 13.3 0.0 2.1 1 1 1 2 2 2 2 AAA ATPase domain AAA_23 PF13476.6 gi|530547771|ref|YP_008428303.1| - 0.00014 22.4 0.1 0.00029 21.4 0.1 1.4 1 0 0 1 1 1 1 AAA domain DUF4162 PF13732.6 gi|530547771|ref|YP_008428303.1| - 0.00033 21.3 1.3 0.002 18.8 0.4 2.3 1 1 1 2 2 2 1 Domain of unknown function (DUF4162) AAA PF00004.29 gi|530547771|ref|YP_008428303.1| - 0.0011 19.4 0.2 0.0076 16.7 0.1 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) SRP54 PF00448.22 gi|530547771|ref|YP_008428303.1| - 0.0065 16.1 0.0 0.012 15.2 0.0 1.4 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_30 PF13604.6 gi|530547771|ref|YP_008428303.1| - 0.034 13.9 0.0 0.061 13.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain Rad17 PF03215.15 gi|530547771|ref|YP_008428303.1| - 0.043 13.7 0.0 0.063 13.2 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain RsgA_GTPase PF03193.16 gi|530547771|ref|YP_008428303.1| - 0.047 13.6 0.0 0.089 12.7 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase dNK PF01712.19 gi|530547771|ref|YP_008428303.1| - 0.047 13.5 0.0 0.074 12.9 0.0 1.2 1 0 0 1 1 1 0 Deoxynucleoside kinase Thymidylate_kin PF02223.17 gi|530547771|ref|YP_008428303.1| - 0.12 12.1 0.3 0.83 9.3 0.1 2.3 2 0 0 2 2 2 0 Thymidylate kinase Pentapeptide_3 PF13576.6 gi|530547772|ref|YP_008428304.1| - 4.8e-15 55.4 24.7 0.019 15.1 0.2 6.1 3 1 1 4 4 4 4 Pentapeptide repeats (9 copies) Ion_trans_2 PF07885.16 gi|530547772|ref|YP_008428304.1| - 9e-14 51.2 3.9 2.1e-13 50.0 3.9 1.7 1 0 0 1 1 1 1 Ion channel Pentapeptide PF00805.22 gi|530547772|ref|YP_008428304.1| - 3.2e-13 49.0 4.5 0.0018 17.9 0.4 5.5 3 1 1 5 5 5 4 Pentapeptide repeats (8 copies) Pentapeptide_4 PF13599.6 gi|530547772|ref|YP_008428304.1| - 9.7e-12 44.9 16.0 0.072 13.3 0.3 4.6 3 1 0 4 4 4 3 Pentapeptide repeats (9 copies) Ion_trans PF00520.31 gi|530547772|ref|YP_008428304.1| - 0.00017 20.9 0.6 0.0003 20.1 0.6 1.3 1 0 0 1 1 1 1 Ion transport protein TPR_8 PF13181.6 gi|530547772|ref|YP_008428304.1| - 0.059 13.6 0.2 18 5.8 0.0 3.0 2 0 0 2 2 2 0 Tetratricopeptide repeat FtsQ PF03799.15 gi|530547772|ref|YP_008428304.1| - 0.14 13.0 0.0 1.3 9.9 0.0 2.2 1 1 1 2 2 2 0 Cell division protein FtsQ Methyltransf_25 PF13649.6 gi|530547773|ref|YP_008428305.1| - 8.1e-22 77.7 0.0 1.3e-21 77.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|530547773|ref|YP_008428305.1| - 2.9e-18 66.1 0.0 3.8e-18 65.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|530547773|ref|YP_008428305.1| - 4e-17 62.6 0.0 6.5e-17 62.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|530547773|ref|YP_008428305.1| - 3.6e-13 50.1 0.0 5.4e-13 49.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|530547773|ref|YP_008428305.1| - 7.8e-13 48.6 0.0 1.7e-12 47.5 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|530547773|ref|YP_008428305.1| - 4.1e-12 45.9 0.0 6.9e-12 45.2 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family CMAS PF02353.20 gi|530547773|ref|YP_008428305.1| - 2.1e-08 33.8 0.0 2.8e-08 33.4 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase MTS PF05175.14 gi|530547773|ref|YP_008428305.1| - 5.2e-08 32.6 0.0 1.1e-07 31.5 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase small domain TehB PF03848.14 gi|530547773|ref|YP_008428305.1| - 5.6e-08 32.4 0.0 7.7e-08 32.0 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB TPMT PF05724.11 gi|530547773|ref|YP_008428305.1| - 6.1e-06 26.1 0.0 1.3e-05 24.9 0.0 1.6 2 0 0 2 2 2 1 Thiopurine S-methyltransferase (TPMT) NodS PF05401.11 gi|530547773|ref|YP_008428305.1| - 1.6e-05 24.7 0.0 2e-05 24.3 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) RrnaAD PF00398.20 gi|530547773|ref|YP_008428305.1| - 1.7e-05 24.0 0.0 2.2e-05 23.7 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_18 PF12847.7 gi|530547773|ref|YP_008428305.1| - 8.4e-05 22.5 0.0 0.00015 21.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_9 PF08003.11 gi|530547773|ref|YP_008428305.1| - 0.00019 20.5 0.0 0.00031 19.8 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) Methyltransf_4 PF02390.17 gi|530547773|ref|YP_008428305.1| - 0.00021 20.8 0.0 0.00039 19.9 0.0 1.4 1 0 0 1 1 1 1 Putative methyltransferase PCMT PF01135.19 gi|530547773|ref|YP_008428305.1| - 0.0003 20.6 0.0 0.00055 19.7 0.0 1.4 2 0 0 2 2 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) N2227 PF07942.12 gi|530547773|ref|YP_008428305.1| - 0.0011 18.3 0.0 0.0015 17.8 0.0 1.3 1 0 0 1 1 1 1 N2227-like protein UPF0020 PF01170.18 gi|530547773|ref|YP_008428305.1| - 0.0024 17.6 0.0 0.0034 17.1 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_32 PF13679.6 gi|530547773|ref|YP_008428305.1| - 0.0037 17.3 0.0 0.0043 17.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain adh_short PF00106.25 gi|530547773|ref|YP_008428305.1| - 0.0045 16.5 0.1 0.0065 16.0 0.1 1.2 1 0 0 1 1 1 1 short chain dehydrogenase MetW PF07021.12 gi|530547773|ref|YP_008428305.1| - 0.0046 16.6 0.0 0.007 16.0 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_15 PF09445.10 gi|530547773|ref|YP_008428305.1| - 0.0057 16.2 0.0 0.0077 15.8 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Pox_MCEL PF03291.16 gi|530547773|ref|YP_008428305.1| - 0.0068 15.6 0.0 0.012 14.8 0.0 1.4 1 0 0 1 1 1 1 mRNA capping enzyme Met_10 PF02475.16 gi|530547773|ref|YP_008428305.1| - 0.0095 15.7 0.0 0.013 15.3 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_2 PF00891.18 gi|530547773|ref|YP_008428305.1| - 0.011 15.0 0.0 0.027 13.8 0.0 1.6 1 1 0 1 1 1 0 O-methyltransferase domain PrmA PF06325.13 gi|530547773|ref|YP_008428305.1| - 0.019 14.4 0.0 0.027 13.8 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) tRNA_U5-meth_tr PF05958.11 gi|530547773|ref|YP_008428305.1| - 0.044 12.8 0.0 0.058 12.4 0.0 1.1 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase AdoMet_MTase PF07757.13 gi|530547773|ref|YP_008428305.1| - 0.11 12.8 0.0 0.19 12.1 0.0 1.4 1 0 0 1 1 1 0 Predicted AdoMet-dependent methyltransferase Mur_ligase PF01225.25 gi|530547773|ref|YP_008428305.1| - 0.12 12.8 0.0 0.27 11.6 0.0 1.5 1 0 0 1 1 1 0 Mur ligase family, catalytic domain PIN PF01850.21 gi|530547774|ref|YP_008428306.1| - 6.4e-10 39.6 1.0 1.1e-09 38.8 1.0 1.4 1 1 0 1 1 1 1 PIN domain RHH_4 PF13467.6 gi|530547775|ref|YP_008428307.1| - 0.00091 19.1 0.5 0.0019 18.0 0.1 1.7 2 0 0 2 2 2 1 Ribbon-helix-helix domain RHH_1 PF01402.21 gi|530547775|ref|YP_008428307.1| - 0.011 15.6 7.8 0.012 15.6 0.4 2.9 3 0 0 3 3 3 0 Ribbon-helix-helix protein, copG family RHH_3 PF12651.7 gi|530547775|ref|YP_008428307.1| - 0.57 10.2 4.1 1.5 8.8 0.1 3.0 3 1 0 3 3 3 0 Ribbon-helix-helix domain HTH_10 PF04967.12 gi|530547776|ref|YP_008428308.1| - 1.7e-24 85.3 0.1 2.7e-24 84.7 0.1 1.3 1 0 0 1 1 1 1 HTH DNA binding domain HTH_24 PF13412.6 gi|530547776|ref|YP_008428308.1| - 1.9e-08 33.7 0.5 4.2e-08 32.6 0.1 1.8 1 1 1 2 2 2 1 Winged helix-turn-helix DNA-binding Sigma70_r4 PF04545.16 gi|530547776|ref|YP_008428308.1| - 0.00014 21.3 0.1 0.00028 20.3 0.1 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4_2 PF08281.12 gi|530547776|ref|YP_008428308.1| - 0.00016 21.3 0.1 0.00034 20.2 0.1 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_5 PF01022.20 gi|530547776|ref|YP_008428308.1| - 0.00025 20.9 0.0 0.00052 19.8 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_AsnC-type PF13404.6 gi|530547776|ref|YP_008428308.1| - 0.00055 19.7 1.6 0.00091 19.0 0.0 2.2 3 0 0 3 3 2 1 AsnC-type helix-turn-helix domain MarR_2 PF12802.7 gi|530547776|ref|YP_008428308.1| - 0.001 18.9 0.0 0.0021 17.9 0.0 1.5 1 0 0 1 1 1 1 MarR family LexA_DNA_bind PF01726.16 gi|530547776|ref|YP_008428308.1| - 0.0046 16.7 0.6 0.014 15.1 0.6 1.9 1 1 0 1 1 1 1 LexA DNA binding domain HTH_IclR PF09339.10 gi|530547776|ref|YP_008428308.1| - 0.0047 16.7 0.0 0.011 15.5 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_Mga PF08280.11 gi|530547776|ref|YP_008428308.1| - 0.0071 16.4 0.1 0.031 14.3 0.0 2.1 2 0 0 2 2 2 1 M protein trans-acting positive regulator (MGA) HTH domain HTH_17 PF12728.7 gi|530547776|ref|YP_008428308.1| - 0.0079 16.4 0.1 0.03 14.5 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain Fe_dep_repress PF01325.19 gi|530547776|ref|YP_008428308.1| - 0.012 15.8 0.0 0.042 14.0 0.0 2.0 2 0 0 2 2 1 0 Iron dependent repressor, N-terminal DNA binding domain GerE PF00196.19 gi|530547776|ref|YP_008428308.1| - 0.012 15.1 0.0 0.024 14.2 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family HTH_28 PF13518.6 gi|530547776|ref|YP_008428308.1| - 0.013 15.7 0.0 0.025 14.7 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_11 PF08279.12 gi|530547776|ref|YP_008428308.1| - 0.018 14.9 0.0 0.048 13.6 0.0 1.7 1 0 0 1 1 1 0 HTH domain HTH_Crp_2 PF13545.6 gi|530547776|ref|YP_008428308.1| - 0.022 14.7 0.0 0.044 13.8 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_23 PF13384.6 gi|530547776|ref|YP_008428308.1| - 0.032 14.0 0.0 0.061 13.1 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain CHASE9 PF17153.4 gi|530547776|ref|YP_008428308.1| - 0.038 14.1 0.0 0.071 13.3 0.0 1.4 1 0 0 1 1 1 0 Periplasmic sensor domain, extracellular HTH_38 PF13936.6 gi|530547776|ref|YP_008428308.1| - 0.045 13.5 0.2 0.097 12.4 0.2 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_20 PF12840.7 gi|530547776|ref|YP_008428308.1| - 0.058 13.5 0.0 0.11 12.6 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_40 PF14493.6 gi|530547776|ref|YP_008428308.1| - 0.068 13.6 0.8 0.19 12.2 0.1 2.0 3 0 0 3 3 1 0 Helix-turn-helix domain HTH_3 PF01381.22 gi|530547776|ref|YP_008428308.1| - 0.083 13.0 0.0 0.25 11.4 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix GntR PF00392.21 gi|530547776|ref|YP_008428308.1| - 0.095 12.4 0.0 0.23 11.1 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_36 PF13730.6 gi|530547776|ref|YP_008428308.1| - 0.1 12.6 0.0 0.22 11.5 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain AbiEi_4 PF13338.6 gi|530547776|ref|YP_008428308.1| - 0.15 12.2 0.1 0.54 10.5 0.0 1.9 2 0 0 2 2 1 0 Transcriptional regulator, AbiEi antitoxin HTH_35 PF13693.6 gi|530547776|ref|YP_008428308.1| - 0.16 12.0 0.0 0.31 11.1 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_26 PF13443.6 gi|530547776|ref|YP_008428308.1| - 0.16 12.4 0.0 0.45 11.0 0.0 1.7 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain adh_short PF00106.25 gi|530547777|ref|YP_008428309.1| - 9.3e-40 136.2 0.0 1.1e-39 135.9 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|530547777|ref|YP_008428309.1| - 1.3e-28 100.2 0.0 1.5e-28 100.0 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase Epimerase PF01370.21 gi|530547777|ref|YP_008428309.1| - 2e-07 30.7 0.1 0.0002 20.9 0.0 2.1 2 0 0 2 2 2 2 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.6 gi|530547777|ref|YP_008428309.1| - 3.6e-07 30.2 0.4 1.9e-05 24.6 0.4 2.3 1 1 0 1 1 1 1 NAD(P)H-binding KR PF08659.10 gi|530547777|ref|YP_008428309.1| - 1.5e-06 28.3 0.0 2.1e-06 27.8 0.0 1.2 1 0 0 1 1 1 1 KR domain TrkA_N PF02254.18 gi|530547777|ref|YP_008428309.1| - 0.00038 20.7 0.8 0.0013 19.0 0.3 2.1 2 1 0 2 2 2 1 TrkA-N domain GDP_Man_Dehyd PF16363.5 gi|530547777|ref|YP_008428309.1| - 0.0072 15.8 0.1 0.018 14.4 0.0 1.7 2 0 0 2 2 2 1 GDP-mannose 4,6 dehydratase ADH_zinc_N PF00107.26 gi|530547777|ref|YP_008428309.1| - 0.019 15.0 0.0 0.033 14.2 0.0 1.4 1 0 0 1 1 1 0 Zinc-binding dehydrogenase NAD_binding_2 PF03446.15 gi|530547777|ref|YP_008428309.1| - 0.089 13.0 0.0 0.27 11.4 0.0 1.8 2 1 1 3 3 3 0 NAD binding domain of 6-phosphogluconate dehydrogenase 3HCDH_N PF02737.18 gi|530547777|ref|YP_008428309.1| - 0.13 12.1 0.1 0.21 11.4 0.1 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.16 gi|530547777|ref|YP_008428309.1| - 0.14 11.8 0.0 0.53 9.9 0.0 2.0 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA AIRS PF00586.24 gi|530547778|ref|YP_008428310.1| - 2.4e-14 53.7 0.1 4.1e-14 53.0 0.1 1.4 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain AIRS_C PF02769.22 gi|530547778|ref|YP_008428310.1| - 1.9e-07 31.3 0.0 2.8e-07 30.8 0.0 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain DUF3201 PF11447.8 gi|530547778|ref|YP_008428310.1| - 0.016 14.8 0.8 2.5 7.6 0.3 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3201) KH_dom-like PF14714.6 gi|530547778|ref|YP_008428310.1| - 0.15 12.4 0.0 0.28 11.5 0.0 1.4 1 0 0 1 1 1 0 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal GHMP_kinases_C PF08544.13 gi|530547779|ref|YP_008428311.1| - 2.4e-15 56.7 0.1 4.1e-15 55.9 0.1 1.4 1 0 0 1 1 1 1 GHMP kinases C terminal GalKase_gal_bdg PF10509.9 gi|530547779|ref|YP_008428311.1| - 2.6e-15 55.7 0.0 7.5e-15 54.2 0.0 1.8 1 0 0 1 1 1 1 Galactokinase galactose-binding signature GHMP_kinases_N PF00288.26 gi|530547779|ref|YP_008428311.1| - 4.7e-13 49.2 3.1 1.3e-12 47.8 0.1 2.3 2 0 0 2 2 2 1 GHMP kinases N terminal domain Glyco_hydro_57 PF03065.15 gi|530547780|ref|YP_008428312.1| - 9e-47 159.8 0.0 1.8e-46 158.8 0.0 1.4 1 1 0 1 1 1 1 Glycosyl hydrolase family 57 Polysacc_deac_1 PF01522.21 gi|530547780|ref|YP_008428312.1| - 0.0043 17.0 0.0 0.0066 16.3 0.0 1.3 1 0 0 1 1 1 1 Polysaccharide deacetylase MFS_1 PF07690.16 gi|530547781|ref|YP_008428313.1| - 3.5e-57 193.9 26.9 1.4e-49 168.9 23.8 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|530547781|ref|YP_008428313.1| - 1.2e-12 47.4 23.3 6.2e-11 41.8 20.3 2.9 1 1 1 2 2 2 1 Sugar (and other) transporter MFS_1_like PF12832.7 gi|530547781|ref|YP_008428313.1| - 3.1e-06 26.3 8.8 3.1e-06 26.3 8.8 3.4 2 1 0 3 3 3 2 MFS_1 like family MFS_3 PF05977.13 gi|530547781|ref|YP_008428313.1| - 2.1e-05 23.2 4.9 2.4e-05 23.0 0.1 2.1 1 1 0 2 2 2 1 Transmembrane secretion effector ATG22 PF11700.8 gi|530547781|ref|YP_008428313.1| - 0.011 14.4 22.9 0.0082 14.8 7.3 3.5 1 1 1 3 3 3 0 Vacuole effluxer Atg22 like OATP PF03137.20 gi|530547781|ref|YP_008428313.1| - 0.076 11.3 25.2 2.5 6.3 12.8 3.8 2 1 1 3 3 3 0 Organic Anion Transporter Polypeptide (OATP) family TRI12 PF06609.13 gi|530547781|ref|YP_008428313.1| - 0.23 9.8 9.8 0.029 12.8 0.4 2.1 2 0 0 2 2 2 0 Fungal trichothecene efflux pump (TRI12) DUF3938 PF13074.6 gi|530547781|ref|YP_008428313.1| - 2.9 8.2 9.0 0.22 11.8 1.3 2.9 2 1 1 3 3 3 0 Protein of unknown function (DUF3938) Glyco_hydro_1 PF00232.18 gi|530547782|ref|YP_008428314.1| - 4.1e-91 305.7 10.1 8.2e-90 301.4 10.1 2.0 1 1 0 1 1 1 1 Glycosyl hydrolase family 1 Cellulase PF00150.18 gi|530547782|ref|YP_008428314.1| - 2.4e-07 30.5 0.1 1e-06 28.4 0.1 1.8 1 1 0 1 1 1 1 Cellulase (glycosyl hydrolase family 5) GalP_UDP_transf PF01087.22 gi|530547783|ref|YP_008428315.1| - 7.3e-26 91.7 0.0 3.9e-25 89.3 0.0 2.1 2 1 0 2 2 2 1 Galactose-1-phosphate uridyl transferase, N-terminal domain GalP_UDP_tr_C PF02744.17 gi|530547783|ref|YP_008428315.1| - 5.1e-18 65.3 0.0 9.3e-18 64.5 0.0 1.4 1 0 0 1 1 1 1 Galactose-1-phosphate uridyl transferase, C-terminal domain HIT PF01230.23 gi|530547783|ref|YP_008428315.1| - 3.8e-06 27.5 0.0 0.0029 18.3 0.0 2.5 2 0 0 2 2 2 2 HIT domain DUF4921 PF16268.5 gi|530547783|ref|YP_008428315.1| - 7e-06 25.1 0.0 1.2e-05 24.3 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4921) DcpS_C PF11969.8 gi|530547783|ref|YP_008428315.1| - 9.4e-05 22.9 0.1 0.00022 21.7 0.0 1.6 2 0 0 2 2 2 1 Scavenger mRNA decapping enzyme C-term binding Lambda_CIII PF02061.16 gi|530547783|ref|YP_008428315.1| - 0.1 12.7 0.1 0.21 11.6 0.1 1.5 1 0 0 1 1 1 0 Lambda Phage CIII DUF4931 PF16285.5 gi|530547783|ref|YP_008428315.1| - 0.11 11.8 0.0 0.28 10.4 0.0 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4931) LAGLIDADG_3 PF14528.6 gi|530547784|ref|YP_008428316.1| - 1.2e-06 28.8 0.2 4.6e-05 23.6 0.1 3.0 2 0 0 2 2 2 1 LAGLIDADG-like domain Intein_splicing PF14890.6 gi|530547784|ref|YP_008428316.1| - 3.5e-06 27.0 0.0 0.00067 19.6 0.0 2.5 2 0 0 2 2 2 1 Intein splicing domain PHP_C PF13263.6 gi|530547784|ref|YP_008428316.1| - 5e-05 23.0 0.5 0.00012 21.7 0.0 1.9 2 0 0 2 2 2 1 PHP-associated Hint_2 PF13403.6 gi|530547784|ref|YP_008428316.1| - 0.0031 17.8 0.0 0.0096 16.2 0.0 1.9 2 0 0 2 2 2 1 Hint domain TF_Zn_Ribbon PF08271.12 gi|530547784|ref|YP_008428316.1| - 0.0079 15.7 0.1 0.019 14.5 0.1 1.6 1 0 0 1 1 1 1 TFIIB zinc-binding Vint PF14623.6 gi|530547784|ref|YP_008428316.1| - 0.01 15.7 0.1 0.018 14.8 0.1 1.4 1 0 0 1 1 1 1 Hint-domain Cu_bind_like PF02298.17 gi|530547784|ref|YP_008428316.1| - 0.058 13.4 0.0 0.13 12.2 0.0 1.5 1 0 0 1 1 1 0 Plastocyanin-like domain zinc_ribbon_4 PF13717.6 gi|530547784|ref|YP_008428316.1| - 0.06 13.3 0.6 0.17 11.8 0.6 1.9 1 0 0 1 1 1 0 zinc-ribbon domain PAC2 PF09754.9 gi|530547785|ref|YP_008428317.1| - 4.6e-47 160.8 0.0 5.4e-47 160.6 0.0 1.0 1 0 0 1 1 1 1 PAC2 family Nop10p PF04135.12 gi|530547786|ref|YP_008428318.1| - 9.6e-28 96.0 4.1 1.1e-27 95.9 4.1 1.0 1 0 0 1 1 1 1 Nucleolar RNA-binding protein, Nop10p family RecR PF02132.15 gi|530547786|ref|YP_008428318.1| - 3.2e-05 23.4 0.9 4.1e-05 23.1 0.9 1.2 1 0 0 1 1 1 1 RecR protein DUF35_N PF12172.8 gi|530547786|ref|YP_008428318.1| - 0.00034 20.4 1.3 0.00076 19.3 1.3 1.6 1 1 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) PolC_DP2 PF03833.13 gi|530547786|ref|YP_008428318.1| - 0.00078 17.4 0.2 0.00078 17.4 0.2 1.0 1 0 0 1 1 1 1 DNA polymerase II large subunit DP2 zf-NADH-PPase PF09297.11 gi|530547786|ref|YP_008428318.1| - 0.0042 16.7 1.9 0.41 10.3 0.2 2.2 2 0 0 2 2 2 1 NADH pyrophosphatase zinc ribbon domain DNA_ligase_ZBD PF03119.16 gi|530547786|ref|YP_008428318.1| - 0.026 14.5 3.2 0.9 9.6 0.5 2.2 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zf-nanos PF05741.13 gi|530547786|ref|YP_008428318.1| - 0.029 14.6 1.7 0.094 13.0 1.7 1.8 1 1 0 1 1 1 0 Nanos RNA binding domain DZR PF12773.7 gi|530547786|ref|YP_008428318.1| - 0.034 14.2 2.5 0.051 13.6 2.5 1.3 1 1 0 1 1 1 0 Double zinc ribbon Cys_rich_KTR PF14205.6 gi|530547786|ref|YP_008428318.1| - 0.053 13.3 3.8 0.47 10.3 0.3 2.2 1 1 1 2 2 2 0 Cysteine-rich KTR NRDD PF13597.6 gi|530547786|ref|YP_008428318.1| - 0.055 12.3 1.1 0.06 12.1 1.1 1.0 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase zf-ribbon_3 PF13248.6 gi|530547786|ref|YP_008428318.1| - 0.059 12.8 7.4 1 8.9 0.4 2.2 1 1 0 1 1 1 0 zinc-ribbon domain zf-tcix PF14952.6 gi|530547786|ref|YP_008428318.1| - 0.094 12.3 9.3 2.4 7.8 9.3 2.3 1 1 0 1 1 1 0 Putative treble-clef, zinc-finger, Zn-binding zinc_ribbon_2 PF13240.6 gi|530547786|ref|YP_008428318.1| - 0.12 12.1 7.3 2.1 8.1 1.9 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-FPG_IleRS PF06827.14 gi|530547786|ref|YP_008428318.1| - 0.13 12.1 6.5 0.33 10.9 1.1 2.2 1 1 1 2 2 2 0 Zinc finger found in FPG and IleRS Zn-ribbon_8 PF09723.10 gi|530547786|ref|YP_008428318.1| - 0.14 12.3 5.4 1.9 8.7 0.3 2.3 1 1 1 2 2 2 0 Zinc ribbon domain zf-ISL3 PF14690.6 gi|530547786|ref|YP_008428318.1| - 0.17 12.6 6.4 2.4 8.9 0.8 2.3 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-RRN7 PF11781.8 gi|530547786|ref|YP_008428318.1| - 0.29 10.8 4.9 2.1 8.1 0.3 2.2 1 1 1 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 zf_CopZ PF18423.1 gi|530547786|ref|YP_008428318.1| - 0.37 10.8 4.1 2.4 8.2 0.4 2.2 2 0 0 2 2 2 0 Zinc binding domain TF_Zn_Ribbon PF08271.12 gi|530547786|ref|YP_008428318.1| - 0.4 10.2 6.8 3 7.4 6.8 2.0 1 1 0 1 1 1 0 TFIIB zinc-binding zf-TFIIB PF13453.6 gi|530547786|ref|YP_008428318.1| - 0.48 9.8 4.5 1.8 8.0 0.3 2.3 1 1 1 2 2 2 0 Transcription factor zinc-finger Cys_rich_CPCC PF14206.6 gi|530547786|ref|YP_008428318.1| - 0.56 10.1 3.3 1.4 8.8 3.3 1.7 1 1 0 1 1 1 0 Cysteine-rich CPCC CpXC PF14353.6 gi|530547786|ref|YP_008428318.1| - 0.68 10.0 3.1 9.1 6.4 0.1 2.1 1 1 1 2 2 2 0 CpXC protein Prim_Zn_Ribbon PF08273.12 gi|530547786|ref|YP_008428318.1| - 1 9.7 6.0 2 8.7 0.3 2.3 1 1 1 2 2 2 0 Zinc-binding domain of primase-helicase DUF1610 PF07754.11 gi|530547786|ref|YP_008428318.1| - 1 9.4 6.9 8.3 6.5 1.2 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) OrfB_Zn_ribbon PF07282.11 gi|530547786|ref|YP_008428318.1| - 1 9.3 4.5 3.2 7.8 0.2 2.2 1 1 1 2 2 2 0 Putative transposase DNA-binding domain zf-C2H2 PF00096.26 gi|530547786|ref|YP_008428318.1| - 1.1 9.9 4.2 15 6.3 0.1 2.3 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf_C2H2_10 PF18414.1 gi|530547786|ref|YP_008428318.1| - 1.1 8.8 5.1 3 7.4 0.7 2.3 1 1 1 2 2 2 0 C2H2 type zinc-finger Rad50_zn_hook PF04423.14 gi|530547786|ref|YP_008428318.1| - 1.2 9.1 5.9 10 6.0 0.1 2.6 3 0 0 3 3 3 0 Rad50 zinc hook motif Zn_Tnp_IS1595 PF12760.7 gi|530547786|ref|YP_008428318.1| - 1.3 9.0 5.8 6.3 6.9 0.3 2.2 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Lar_restr_allev PF14354.6 gi|530547786|ref|YP_008428318.1| - 1.9 8.9 6.8 10 6.6 0.4 2.2 1 1 1 2 2 2 0 Restriction alleviation protein Lar YhfH PF14149.6 gi|530547786|ref|YP_008428318.1| - 2.3 8.3 7.7 4.2 7.4 1.9 2.2 1 1 1 2 2 2 0 YhfH-like protein zf-C2HC_2 PF13913.6 gi|530547786|ref|YP_008428318.1| - 2.3 8.2 9.1 5.1 7.1 3.3 2.3 2 0 0 2 2 2 0 zinc-finger of a C2HC-type zf-C4H2 PF10146.9 gi|530547786|ref|YP_008428318.1| - 6 7.1 6.2 7.4 6.8 6.2 1.1 1 0 0 1 1 1 0 Zinc finger-containing protein Zn-C2H2_12 PF18112.1 gi|530547786|ref|YP_008428318.1| - 7.1 7.2 7.8 4.5 7.8 0.5 2.2 2 0 0 2 2 2 0 Autophagy receptor zinc finger-C2H2 domain zf-H2C2_2 PF13465.6 gi|530547786|ref|YP_008428318.1| - 9.3 6.9 9.3 6.5 7.4 0.5 2.6 3 0 0 3 3 2 0 Zinc-finger double domain EIF_2_alpha PF07541.12 gi|530547787|ref|YP_008428319.1| - 8.3e-23 80.7 0.1 3.3e-22 78.8 0.0 2.0 2 0 0 2 2 2 1 Eukaryotic translation initiation factor 2 alpha subunit S1 PF00575.23 gi|530547787|ref|YP_008428319.1| - 1.3e-12 47.9 0.1 3.3e-12 46.6 0.1 1.7 1 0 0 1 1 1 1 S1 RNA binding domain Ribosomal_S27e PF01667.17 gi|530547788|ref|YP_008428320.1| - 1.9e-26 91.5 0.7 2.1e-26 91.4 0.7 1.0 1 0 0 1 1 1 1 Ribosomal protein S27 TF_Zn_Ribbon PF08271.12 gi|530547788|ref|YP_008428320.1| - 0.0013 18.3 0.2 0.0014 18.1 0.2 1.2 1 0 0 1 1 1 1 TFIIB zinc-binding zinc_ribbon_6 PF14599.6 gi|530547788|ref|YP_008428320.1| - 0.002 18.1 0.1 0.0024 17.9 0.1 1.1 1 0 0 1 1 1 1 Zinc-ribbon HypA PF01155.19 gi|530547788|ref|YP_008428320.1| - 0.0076 16.3 0.1 0.0087 16.1 0.1 1.1 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA ADD_DNMT3 PF17980.1 gi|530547788|ref|YP_008428320.1| - 0.041 13.9 2.2 0.79 9.8 2.2 2.1 1 1 0 1 1 1 0 Cysteine rich ADD domain in DNMT3 Zn-ribbon_8 PF09723.10 gi|530547788|ref|YP_008428320.1| - 0.058 13.5 0.3 0.094 12.9 0.3 1.3 1 0 0 1 1 1 0 Zinc ribbon domain TackOD1 PF18551.1 gi|530547788|ref|YP_008428320.1| - 0.082 12.6 0.3 0.11 12.2 0.3 1.2 1 0 0 1 1 1 0 Thaumarchaeal output domain 1 zf-RanBP PF00641.18 gi|530547788|ref|YP_008428320.1| - 0.13 11.7 1.3 6.3 6.2 0.2 2.1 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others zf-BED PF02892.15 gi|530547788|ref|YP_008428320.1| - 0.13 12.3 0.1 3.2 7.9 0.0 2.1 2 0 0 2 2 2 0 BED zinc finger zf-CCHC_6 PF15288.6 gi|530547788|ref|YP_008428320.1| - 1.6 8.6 4.5 2.4 8.1 2.3 2.0 1 1 1 2 2 2 0 Zinc knuckle Ribosomal_L44 PF00935.19 gi|530547789|ref|YP_008428321.1| - 1.7e-26 92.5 5.2 2.2e-26 92.1 5.2 1.1 1 0 0 1 1 1 1 Ribosomal protein L44 Ribosomal_L33 PF00471.20 gi|530547789|ref|YP_008428321.1| - 7.2e-05 23.1 4.2 0.0015 19.0 2.0 2.4 2 0 0 2 2 2 1 Ribosomal protein L33 Elf1 PF05129.13 gi|530547789|ref|YP_008428321.1| - 0.0072 16.4 1.0 1 9.4 0.1 2.2 2 0 0 2 2 2 2 Transcription elongation factor Elf1 like Nudix_N_2 PF14803.6 gi|530547789|ref|YP_008428321.1| - 0.01 15.7 2.4 2.8 7.9 0.3 2.3 2 0 0 2 2 2 0 Nudix N-terminal NOB1_Zn_bind PF08772.11 gi|530547789|ref|YP_008428321.1| - 0.017 15.3 2.3 0.068 13.3 0.3 2.1 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like HypA PF01155.19 gi|530547789|ref|YP_008428321.1| - 0.018 15.0 0.5 0.075 13.1 0.5 1.8 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn-ribbon_8 PF09723.10 gi|530547789|ref|YP_008428321.1| - 0.036 14.2 2.6 3.3 7.9 0.3 2.4 2 0 0 2 2 2 0 Zinc ribbon domain zf-H2C2_2 PF13465.6 gi|530547789|ref|YP_008428321.1| - 0.041 14.3 4.5 4.7 7.8 0.6 2.5 2 0 0 2 2 2 0 Zinc-finger double domain Zn_Tnp_IS1595 PF12760.7 gi|530547789|ref|YP_008428321.1| - 0.043 13.8 3.3 1.2 9.1 0.6 2.2 2 0 0 2 2 2 0 Transposase zinc-ribbon domain Lar_restr_allev PF14354.6 gi|530547789|ref|YP_008428321.1| - 0.057 13.8 0.2 0.11 12.9 0.2 1.4 1 1 0 1 1 1 0 Restriction alleviation protein Lar zf-LITAF-like PF10601.9 gi|530547789|ref|YP_008428321.1| - 0.088 13.1 3.2 0.22 11.8 0.5 2.0 2 0 0 2 2 2 0 LITAF-like zinc ribbon domain Rubrerythrin PF02915.17 gi|530547790|ref|YP_008428322.1| - 0.0085 16.5 12.9 0.11 12.9 2.2 2.4 2 1 0 2 2 2 2 Rubrerythrin Ferritin PF00210.24 gi|530547790|ref|YP_008428322.1| - 0.011 15.7 7.2 0.034 14.1 0.3 2.3 2 1 0 2 2 2 0 Ferritin-like domain Act-Frag_cataly PF09192.10 gi|530547790|ref|YP_008428322.1| - 0.058 12.8 1.8 0.19 11.1 0.3 2.0 2 0 0 2 2 2 0 Actin-fragmin kinase, catalytic Rad33 PF08730.10 gi|530547790|ref|YP_008428322.1| - 0.069 13.1 0.5 0.069 13.1 0.5 2.3 3 0 0 3 3 3 0 Rad33 Sod_Fe_N PF00081.22 gi|530547790|ref|YP_008428322.1| - 0.095 13.2 0.4 0.095 13.2 0.4 1.8 2 1 0 2 2 2 0 Iron/manganese superoxide dismutases, alpha-hairpin domain CHAD PF05235.14 gi|530547790|ref|YP_008428322.1| - 0.11 12.5 3.8 0.14 12.1 0.8 2.0 2 0 0 2 2 2 0 CHAD domain Sulfotransfer_4 PF17784.1 gi|530547790|ref|YP_008428322.1| - 0.17 11.7 0.5 2 8.2 0.0 2.4 2 1 1 3 3 3 0 Sulfotransferase domain DUF4142 PF13628.6 gi|530547790|ref|YP_008428322.1| - 0.21 11.8 2.7 0.28 11.4 0.6 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4142) Cnd1 PF12717.7 gi|530547790|ref|YP_008428322.1| - 0.57 10.2 4.7 0.68 10.0 1.6 2.1 2 0 0 2 2 2 0 non-SMC mitotic condensation complex subunit 1 FapA PF03961.13 gi|530547790|ref|YP_008428322.1| - 0.89 8.1 11.5 0.57 8.7 0.4 2.0 2 0 0 2 2 2 0 Flagellar Assembly Protein A DUF2383 PF09537.10 gi|530547790|ref|YP_008428322.1| - 1.1 9.6 7.2 0.24 11.8 1.1 2.5 3 0 0 3 3 3 0 Domain of unknown function (DUF2383) DUF4358 PF14270.6 gi|530547790|ref|YP_008428322.1| - 1.3 9.4 11.6 1.1 9.6 0.8 3.4 2 2 1 3 3 3 0 Domain of unknown function (DUF4358) TcdB_N PF12918.7 gi|530547790|ref|YP_008428322.1| - 3.4 8.0 16.6 0.63 10.4 0.8 3.8 3 1 1 4 4 4 0 TcdB toxin N-terminal helical domain RNase_J_C PF17770.1 gi|530547790|ref|YP_008428322.1| - 5.6 8.1 6.9 4.1 8.5 1.0 3.1 2 2 2 4 4 4 0 Ribonuclease J C-terminal domain Lys_export PF03956.13 gi|530547791|ref|YP_008428323.1| - 1.8e-59 200.5 14.3 2.1e-59 200.2 14.3 1.0 1 0 0 1 1 1 1 Lysine exporter LysO Lys_export PF03956.13 gi|530547792|ref|YP_008428324.1| - 5.2e-05 22.9 3.7 6.4e-05 22.6 3.7 1.0 1 0 0 1 1 1 1 Lysine exporter LysO DUF554 PF04474.12 gi|530547792|ref|YP_008428324.1| - 0.0026 17.2 1.6 0.0033 16.9 1.0 1.4 1 1 1 2 2 2 1 Protein of unknown function (DUF554) Aldo_ket_red PF00248.21 gi|530547793|ref|YP_008428325.1| - 4.3e-65 219.8 0.1 2e-63 214.3 0.1 2.0 1 1 0 1 1 1 1 Aldo/keto reductase family AP2 PF00847.20 gi|530547793|ref|YP_008428325.1| - 0.012 15.9 0.0 0.03 14.6 0.0 1.6 1 0 0 1 1 1 0 AP2 domain TBPIP PF07106.13 gi|530547793|ref|YP_008428325.1| - 0.034 14.1 0.2 38 4.3 0.0 3.3 3 0 0 3 3 3 0 TBPIP/Hop2 winged helix domain FeS_assembly_P PF01883.19 gi|530547794|ref|YP_008428326.1| - 1.3e-10 41.3 0.1 2.1e-10 40.6 0.1 1.4 1 0 0 1 1 1 1 Iron-sulfur cluster assembly protein DUF3368 PF11848.8 gi|530547794|ref|YP_008428326.1| - 0.068 13.0 0.1 1.7 8.5 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF3368) FeS_assembly_P PF01883.19 gi|530547795|ref|YP_008428327.1| - 2e-05 24.7 0.0 2.8e-05 24.2 0.0 1.1 1 0 0 1 1 1 1 Iron-sulfur cluster assembly protein Molybdopterin PF00384.22 gi|530547796|ref|YP_008428328.1| - 4.4e-47 161.0 0.0 2.1e-46 158.8 0.0 1.9 1 1 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|530547796|ref|YP_008428328.1| - 6e-20 71.3 0.0 1.6e-19 70.0 0.0 1.7 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 gi|530547796|ref|YP_008428328.1| - 3.2e-07 30.2 0.0 8.1e-07 28.9 0.0 1.7 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain DUF2002 PF09400.10 gi|530547796|ref|YP_008428328.1| - 0.11 12.5 0.1 8.1 6.5 0.0 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2002) Sld5 PF05916.11 gi|530547797|ref|YP_008428329.1| - 0.015 15.8 1.1 0.024 15.1 1.1 1.4 1 0 0 1 1 1 0 GINS complex protein PCNA_N PF00705.18 gi|530547798|ref|YP_008428330.1| - 2.2e-19 69.4 0.0 1.1e-16 60.7 0.0 2.1 2 0 0 2 2 2 2 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.15 gi|530547798|ref|YP_008428330.1| - 8e-10 39.0 0.0 6.9e-09 35.9 0.0 2.2 2 0 0 2 2 2 1 Proliferating cell nuclear antigen, C-terminal domain Rad1 PF02144.16 gi|530547798|ref|YP_008428330.1| - 5e-09 35.6 0.0 4.3e-06 26.0 0.0 2.0 1 1 1 2 2 2 2 Repair protein Rad1/Rec1/Rad17 Rad9 PF04139.13 gi|530547798|ref|YP_008428330.1| - 0.0044 16.5 0.0 0.01 15.3 0.0 1.9 1 1 1 2 2 2 1 Rad9 TFIIS_C PF01096.18 gi|530547800|ref|YP_008428332.1| - 1.3e-21 76.2 15.4 2.8e-21 75.1 4.2 3.1 3 0 0 3 3 3 1 Transcription factor S-II (TFIIS) RNA_POL_M_15KD PF02150.16 gi|530547800|ref|YP_008428332.1| - 5.5e-14 51.7 12.9 2.9e-12 46.2 2.2 3.1 3 0 0 3 3 3 1 RNA polymerases M/15 Kd subunit TF_Zn_Ribbon PF08271.12 gi|530547800|ref|YP_008428332.1| - 1.3e-06 27.8 10.7 0.0016 17.9 1.7 2.9 2 1 0 2 2 2 2 TFIIB zinc-binding PhnA_Zn_Ribbon PF08274.12 gi|530547800|ref|YP_008428332.1| - 2.6e-06 27.3 2.9 0.053 13.5 0.2 2.9 2 1 0 2 2 2 2 PhnA Zinc-Ribbon OrfB_Zn_ribbon PF07282.11 gi|530547800|ref|YP_008428332.1| - 5.6e-06 26.2 7.8 0.00093 19.1 0.4 2.7 2 1 0 2 2 2 2 Putative transposase DNA-binding domain Zn_Tnp_IS1595 PF12760.7 gi|530547800|ref|YP_008428332.1| - 1.1e-05 25.3 13.7 0.0026 17.7 2.2 3.2 2 2 1 3 3 3 3 Transposase zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|530547800|ref|YP_008428332.1| - 1.3e-05 24.7 15.0 0.1 12.3 0.2 4.2 4 0 0 4 4 4 2 zinc-ribbon domain DZR PF12773.7 gi|530547800|ref|YP_008428332.1| - 2.1e-05 24.4 6.4 0.019 15.0 6.4 2.6 1 1 0 1 1 1 1 Double zinc ribbon Baculo_LEF5_C PF11792.8 gi|530547800|ref|YP_008428332.1| - 9.2e-05 22.0 0.0 9.2e-05 22.0 0.0 4.0 5 0 0 5 5 4 1 Baculoviridae late expression factor 5 C-terminal domain A2L_zn_ribbon PF08792.10 gi|530547800|ref|YP_008428332.1| - 0.00021 20.9 9.1 0.05 13.3 2.0 4.0 3 1 0 3 3 3 1 A2L zinc ribbon domain zf-ribbon_3 PF13248.6 gi|530547800|ref|YP_008428332.1| - 0.00047 19.5 17.4 0.053 12.9 4.7 4.0 3 1 0 3 3 3 2 zinc-ribbon domain zinc_ribbon_13 PF09855.9 gi|530547800|ref|YP_008428332.1| - 0.00084 19.5 12.0 1.5 9.1 0.1 4.0 2 2 1 3 3 3 2 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) IBR PF01485.21 gi|530547800|ref|YP_008428332.1| - 0.0016 18.6 10.0 0.014 15.6 1.3 2.9 2 1 0 2 2 2 1 IBR domain, a half RING-finger domain Lar_restr_allev PF14354.6 gi|530547800|ref|YP_008428332.1| - 0.0018 18.6 8.8 0.27 11.7 0.8 2.6 2 1 0 2 2 2 2 Restriction alleviation protein Lar zinc_ribbon_4 PF13717.6 gi|530547800|ref|YP_008428332.1| - 0.0022 17.8 13.7 0.47 10.4 0.2 4.2 3 1 0 3 3 3 2 zinc-ribbon domain Auto_anti-p27 PF06677.12 gi|530547800|ref|YP_008428332.1| - 0.0061 16.7 3.5 0.0061 16.7 3.5 2.8 3 0 0 3 3 3 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Rpr2 PF04032.16 gi|530547800|ref|YP_008428332.1| - 0.0076 16.5 5.4 0.14 12.5 5.4 2.5 1 1 0 1 1 1 1 RNAse P Rpr2/Rpp21/SNM1 subunit domain zf_C2H2_10 PF18414.1 gi|530547800|ref|YP_008428332.1| - 0.0087 15.6 14.1 2.3 7.8 0.7 4.3 4 0 0 4 4 4 1 C2H2 type zinc-finger Elf1 PF05129.13 gi|530547800|ref|YP_008428332.1| - 0.0088 16.1 2.6 0.23 11.6 0.1 2.4 1 1 1 2 2 2 1 Transcription elongation factor Elf1 like DUF35_N PF12172.8 gi|530547800|ref|YP_008428332.1| - 0.0091 15.9 8.7 6.4 6.8 0.1 4.0 4 0 0 4 4 4 0 Rubredoxin-like zinc ribbon domain (DUF35_N) HypA PF01155.19 gi|530547800|ref|YP_008428332.1| - 0.011 15.8 6.8 0.037 14.0 0.2 2.9 1 1 2 3 3 3 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-CHY PF05495.12 gi|530547800|ref|YP_008428332.1| - 0.026 15.0 2.5 0.05 14.1 0.3 2.5 1 1 0 1 1 1 0 CHY zinc finger zf-NADH-PPase PF09297.11 gi|530547800|ref|YP_008428332.1| - 0.032 13.9 9.5 0.065 12.9 1.6 3.4 3 1 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain DNA_RNApol_7kD PF03604.13 gi|530547800|ref|YP_008428332.1| - 0.039 13.6 10.5 1.4 8.6 1.7 3.4 3 1 0 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit Rubredoxin_2 PF18073.1 gi|530547800|ref|YP_008428332.1| - 0.046 13.5 19.9 0.38 10.5 0.1 4.1 4 0 0 4 4 4 0 Rubredoxin metal binding domain DUF2387 PF09526.10 gi|530547800|ref|YP_008428332.1| - 0.053 13.7 9.9 1.5 9.0 1.3 2.6 2 2 0 2 2 2 0 Probable metal-binding protein (DUF2387) Zn-ribbon_8 PF09723.10 gi|530547800|ref|YP_008428332.1| - 0.062 13.4 17.8 8.5 6.6 0.6 4.3 3 1 0 3 3 3 0 Zinc ribbon domain zf-Mss51 PF13824.6 gi|530547800|ref|YP_008428332.1| - 0.071 13.2 12.1 2.7 8.1 2.9 3.6 1 1 2 3 3 3 0 Zinc-finger of mitochondrial splicing suppressor 51 zf_UBZ PF18439.1 gi|530547800|ref|YP_008428332.1| - 0.078 12.6 11.6 1.4 8.5 0.2 4.1 4 0 0 4 4 4 0 Ubiquitin-Binding Zinc Finger UPF0547 PF10571.9 gi|530547800|ref|YP_008428332.1| - 0.095 12.8 16.9 5.5 7.2 0.6 4.2 4 0 0 4 4 4 0 Uncharacterised protein family UPF0547 Cys_rich_CPCC PF14206.6 gi|530547800|ref|YP_008428332.1| - 0.15 11.9 0.2 0.15 11.9 0.2 2.7 3 0 0 3 3 3 0 Cysteine-rich CPCC CK_II_beta PF01214.18 gi|530547800|ref|YP_008428332.1| - 0.19 11.5 1.9 1.6 8.5 0.2 2.1 1 1 1 2 2 2 0 Casein kinase II regulatory subunit Nudix_N_2 PF14803.6 gi|530547800|ref|YP_008428332.1| - 0.19 11.7 17.9 7.6 6.5 2.9 4.2 2 2 0 2 2 2 0 Nudix N-terminal zinc-ribbons_6 PF07191.12 gi|530547800|ref|YP_008428332.1| - 0.2 11.6 6.7 1.2 9.2 0.3 2.6 2 1 0 2 2 2 0 zinc-ribbons zf-ACC PF17848.1 gi|530547800|ref|YP_008428332.1| - 0.22 11.6 14.8 4.2 7.5 3.5 4.1 3 1 0 3 3 3 0 Acetyl-coA carboxylase zinc finger domain zinc_ribbon_10 PF10058.9 gi|530547800|ref|YP_008428332.1| - 0.25 11.1 13.6 0.38 10.5 2.4 3.8 2 2 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein TackOD1 PF18551.1 gi|530547800|ref|YP_008428332.1| - 0.31 10.7 6.3 0.43 10.2 2.2 2.6 1 1 1 2 2 2 0 Thaumarchaeal output domain 1 RPA_interact_C PF14768.6 gi|530547800|ref|YP_008428332.1| - 0.33 11.5 4.7 8.2 7.1 4.7 2.7 1 1 0 1 1 1 0 Replication protein A interacting C-terminal eIF-5_eIF-2B PF01873.17 gi|530547800|ref|YP_008428332.1| - 0.34 10.8 5.4 0.36 10.7 0.3 2.3 2 1 0 2 2 2 0 Domain found in IF2B/IF5 Ribosomal_L37ae PF01780.19 gi|530547800|ref|YP_008428332.1| - 0.37 10.9 9.1 1.6 8.9 0.5 3.1 2 2 0 2 2 2 0 Ribosomal L37ae protein family Ribosomal_S27e PF01667.17 gi|530547800|ref|YP_008428332.1| - 0.46 10.2 8.3 5.2 6.9 0.4 3.1 2 1 0 2 2 2 0 Ribosomal protein S27 zf-RING_7 PF02591.15 gi|530547800|ref|YP_008428332.1| - 0.5 10.6 6.3 17 5.7 0.0 3.8 5 0 0 5 5 4 0 C4-type zinc ribbon domain zf-TFIIB PF13453.6 gi|530547800|ref|YP_008428332.1| - 0.55 9.6 12.8 1.5 8.2 1.3 3.1 2 1 0 2 2 2 0 Transcription factor zinc-finger zinc_ribbon_15 PF17032.5 gi|530547800|ref|YP_008428332.1| - 0.73 10.6 11.0 3 8.6 3.8 3.1 2 1 0 2 2 2 0 zinc-ribbon family ADK_lid PF05191.14 gi|530547800|ref|YP_008428332.1| - 0.87 9.6 10.8 10 6.2 0.2 4.1 4 0 0 4 4 4 0 Adenylate kinase, active site lid zf-ISL3 PF14690.6 gi|530547800|ref|YP_008428332.1| - 0.88 10.3 14.2 6.7 7.5 0.1 4.0 3 1 1 4 4 4 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Zn_Tnp_IS1 PF03811.13 gi|530547800|ref|YP_008428332.1| - 0.92 9.3 11.0 0.73 9.6 1.8 3.8 3 1 0 3 3 3 0 InsA N-terminal domain CpXC PF14353.6 gi|530547800|ref|YP_008428332.1| - 1.6 8.8 12.5 2 8.5 0.1 3.9 1 1 2 4 4 4 0 CpXC protein DUF1610 PF07754.11 gi|530547800|ref|YP_008428332.1| - 1.9 8.5 15.6 2.5 8.2 0.6 4.1 4 0 0 4 4 4 0 Domain of unknown function (DUF1610) Opy2 PF09463.10 gi|530547800|ref|YP_008428332.1| - 2.3 8.6 0.1 2.3 8.6 0.1 3.4 4 0 0 4 4 3 0 Opy2 protein zf-tcix PF14952.6 gi|530547800|ref|YP_008428332.1| - 2.4 7.9 15.2 5 6.8 0.2 4.1 4 0 0 4 4 4 0 Putative treble-clef, zinc-finger, Zn-binding C1_1 PF00130.22 gi|530547800|ref|YP_008428332.1| - 2.4 8.1 10.4 0.45 10.4 1.4 2.6 2 1 0 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-C4_Topoisom PF01396.19 gi|530547800|ref|YP_008428332.1| - 2.6 7.9 16.2 2.5 7.9 3.1 3.3 2 2 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zf-RRN7 PF11781.8 gi|530547800|ref|YP_008428332.1| - 3.6 7.4 10.8 24 4.7 0.1 3.9 4 0 0 4 4 4 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 zf-H2C2_2 PF13465.6 gi|530547800|ref|YP_008428332.1| - 3.9 8.1 15.3 14 6.3 0.2 4.2 4 0 0 4 4 4 0 Zinc-finger double domain RNHCP PF12647.7 gi|530547800|ref|YP_008428332.1| - 5.3 7.1 7.3 6.6 6.8 0.1 3.2 1 1 0 2 2 2 0 RNHCP domain zf-HIT PF04438.16 gi|530547800|ref|YP_008428332.1| - 5.8 6.9 15.7 7.9 6.5 0.2 4.1 4 0 0 4 4 4 0 HIT zinc finger Prok-RING_1 PF14446.6 gi|530547800|ref|YP_008428332.1| - 6.9 6.7 10.0 2.8 7.9 1.2 3.0 3 0 0 3 3 3 0 Prokaryotic RING finger family 1 Ogr_Delta PF04606.12 gi|530547800|ref|YP_008428332.1| - 7.1 6.7 13.6 4 7.5 3.9 3.3 2 2 0 2 2 2 0 Ogr/Delta-like zinc finger DUF3797 PF12677.7 gi|530547800|ref|YP_008428332.1| - 7.6 6.5 14.5 0.81 9.6 4.6 3.0 2 2 0 2 2 2 0 Domain of unknown function (DUF3797) DUF3268 PF11672.8 gi|530547800|ref|YP_008428332.1| - 7.7 6.9 8.9 1.8 8.9 1.4 2.5 2 1 0 2 2 2 0 zinc-finger-containing domain GFA PF04828.14 gi|530547800|ref|YP_008428332.1| - 8.6 6.8 9.3 9 6.7 1.4 3.3 1 1 2 3 3 3 0 Glutathione-dependent formaldehyde-activating enzyme DNA_ligase_ZBD PF03119.16 gi|530547800|ref|YP_008428332.1| - 9.3 6.4 10.0 12 6.0 0.4 3.2 3 0 0 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain DUF3837 PF12939.7 gi|530547801|ref|YP_008428333.1| - 0.12 12.8 0.0 0.22 11.9 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3837) PPS_PS PF02006.16 gi|530547802|ref|YP_008428334.1| - 2.1e-75 252.1 1.1 2.6e-75 251.8 1.1 1.1 1 0 0 1 1 1 1 Phosphopantothenate/pantothenate synthetase HTH_19 PF12844.7 gi|530547803|ref|YP_008428335.1| - 4.1e-09 36.3 0.1 1.3e-08 34.7 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_3 PF01381.22 gi|530547803|ref|YP_008428335.1| - 6e-09 35.8 0.0 1.4e-08 34.6 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 gi|530547803|ref|YP_008428335.1| - 2.5e-08 34.1 0.0 5.7e-08 33.0 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|530547803|ref|YP_008428335.1| - 0.011 15.3 0.0 0.026 14.1 0.0 1.7 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding MqsA_antitoxin PF15731.5 gi|530547803|ref|YP_008428335.1| - 0.013 15.6 0.0 0.027 14.5 0.0 1.6 1 1 0 1 1 1 0 Antitoxin component of bacterial toxin-antitoxin system, MqsA YdaS_antitoxin PF15943.5 gi|530547803|ref|YP_008428335.1| - 0.096 12.6 0.0 0.54 10.2 0.0 2.1 2 0 0 2 2 2 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT Aminotran_1_2 PF00155.21 gi|530547804|ref|YP_008428336.1| - 1.6e-38 132.9 0.0 1.8e-38 132.7 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_MocR PF12897.7 gi|530547804|ref|YP_008428336.1| - 4.1e-14 52.2 0.0 6e-14 51.7 0.0 1.1 1 0 0 1 1 1 1 Alanine-glyoxylate amino-transferase IF-2B PF01008.17 gi|530547805|ref|YP_008428337.1| - 7.4e-91 304.3 1.4 8.5e-91 304.1 1.4 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family BtrH_N PF14399.6 gi|530547805|ref|YP_008428337.1| - 0.0013 19.0 0.4 0.32 11.2 0.0 2.7 1 1 1 2 2 2 2 Butirosin biosynthesis protein H, N-terminal PP_kinase_C_1 PF17941.1 gi|530547805|ref|YP_008428337.1| - 0.099 12.2 0.3 0.17 11.4 0.3 1.5 1 0 0 1 1 1 0 Polyphosphate kinase C-terminal domain 1 TYW3 PF02676.14 gi|530547806|ref|YP_008428338.1| - 1.1e-37 129.5 0.0 1.5e-37 129.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase TYW3 SipA PF09052.10 gi|530547807|ref|YP_008428339.1| - 0.014 15.1 0.3 0.41 10.2 0.0 2.4 2 0 0 2 2 2 0 SipA N-terminal domain DUF553 PF04473.12 gi|530547808|ref|YP_008428340.1| - 1.3e-26 93.0 3.5 1.3e-26 93.0 3.5 1.6 2 0 0 2 2 2 1 Transglutaminase-like domain MerR_1 PF13411.6 gi|530547808|ref|YP_008428340.1| - 0.65 10.1 3.6 1.9 8.6 0.1 2.9 3 0 0 3 3 3 0 MerR HTH family regulatory protein CbiQ PF02361.16 gi|530547808|ref|YP_008428340.1| - 2 8.0 15.1 3.6 7.1 15.1 1.4 1 0 0 1 1 1 0 Cobalt transport protein Helicase_C PF00271.31 gi|530547810|ref|YP_008428342.1| - 3.3e-18 66.0 0.0 1.2e-17 64.3 0.0 2.0 1 0 0 1 1 1 1 Helicase conserved C-terminal domain SNF2_N PF00176.23 gi|530547810|ref|YP_008428342.1| - 1.9e-14 53.2 0.0 4.8e-14 51.9 0.0 1.7 1 1 0 1 1 1 1 SNF2 family N-terminal domain DUF3883 PF13020.6 gi|530547810|ref|YP_008428342.1| - 3.4e-12 46.2 0.5 8.7e-12 44.9 0.5 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF3883) ResIII PF04851.15 gi|530547810|ref|YP_008428342.1| - 5.1e-12 46.1 0.4 4.7e-11 43.0 0.0 2.5 3 0 0 3 3 3 1 Type III restriction enzyme, res subunit DEAD PF00270.29 gi|530547810|ref|YP_008428342.1| - 0.00012 21.9 0.0 0.00032 20.5 0.0 1.7 1 0 0 1 1 1 1 DEAD/DEAH box helicase SWI2_SNF2 PF18766.1 gi|530547810|ref|YP_008428342.1| - 0.0003 20.5 0.0 0.0013 18.5 0.0 2.0 2 0 0 2 2 2 1 SWI2/SNF2 ATPase ERCC3_RAD25_C PF16203.5 gi|530547810|ref|YP_008428342.1| - 0.0021 17.3 0.0 0.0076 15.5 0.0 1.8 1 1 0 1 1 1 1 ERCC3/RAD25/XPB C-terminal helicase MEDS PF14417.6 gi|530547810|ref|YP_008428342.1| - 0.075 12.9 0.2 0.5 10.2 0.0 2.3 2 0 0 2 2 2 0 MEDS: MEthanogen/methylotroph, DcmR Sensory domain DUF499 PF04465.12 gi|530547812|ref|YP_008428344.1| - 1.4e-264 880.6 30.2 1.7e-264 880.3 30.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF499) DUF1156 PF06634.12 gi|530547813|ref|YP_008428345.1| - 2.1e-09 37.4 0.0 6.3e-09 35.8 0.0 1.8 1 0 0 1 1 1 1 Protein of unknown function (DUF1156) UPF0020 PF01170.18 gi|530547813|ref|YP_008428345.1| - 2.2e-07 30.7 0.0 0.0028 17.4 0.0 3.1 3 0 0 3 3 3 2 Putative RNA methylase family UPF0020 Cons_hypoth95 PF03602.15 gi|530547813|ref|YP_008428345.1| - 5.7e-05 22.8 0.0 0.31 10.7 0.0 2.8 2 0 0 2 2 2 2 Conserved hypothetical protein 95 MTS PF05175.14 gi|530547813|ref|YP_008428345.1| - 0.068 12.7 0.0 0.21 11.1 0.0 1.8 2 0 0 2 2 2 0 Methyltransferase small domain DUF365 PF04033.12 gi|564287476|ref|YP_008428346.3| - 5.7e-41 138.7 0.7 7.6e-41 138.3 0.7 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF365) EVE PF01878.18 gi|564287476|ref|YP_008428346.3| - 0.023 14.7 0.2 0.065 13.2 0.2 2.0 1 1 0 1 1 1 0 EVE domain DUF5344 PF17279.2 gi|530547815|ref|YP_008428347.1| - 0.011 16.3 0.6 0.012 16.2 0.6 1.0 1 0 0 1 1 1 0 Family of unknown function (DUF5344) HAUS2 PF15003.6 gi|530547815|ref|YP_008428347.1| - 0.016 15.0 0.2 0.017 14.8 0.2 1.0 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 2 FlaC_arch PF05377.11 gi|530547815|ref|YP_008428347.1| - 0.023 15.1 4.4 0.042 14.3 4.4 1.5 1 1 0 1 1 1 0 Flagella accessory protein C (FlaC) Bac_small_YrzI PF09501.10 gi|530547815|ref|YP_008428347.1| - 0.51 10.5 5.6 0.15 12.2 2.0 1.8 1 1 1 2 2 2 0 Probable sporulation protein (Bac_small_yrzI) Rx_N PF18052.1 gi|530547815|ref|YP_008428347.1| - 0.71 10.2 4.9 21 5.5 5.0 2.0 1 1 0 1 1 1 0 Rx N-terminal domain Med9 PF07544.13 gi|530547815|ref|YP_008428347.1| - 1 9.5 6.4 0.94 9.6 1.0 2.0 1 1 1 2 2 2 0 RNA polymerase II transcription mediator complex subunit 9 HTH_24 PF13412.6 gi|530547816|ref|YP_008428348.1| - 9.8e-05 21.8 0.2 0.00018 21.0 0.2 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_34 PF13601.6 gi|530547816|ref|YP_008428348.1| - 0.0011 19.0 0.2 0.0034 17.5 0.1 1.9 1 1 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.19 gi|530547816|ref|YP_008428348.1| - 0.0012 18.7 0.2 0.0033 17.3 0.2 1.8 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Ribosomal_S25 PF03297.15 gi|530547816|ref|YP_008428348.1| - 0.0023 18.1 0.2 0.0023 18.1 0.2 2.0 2 0 0 2 2 2 1 S25 ribosomal protein GntR PF00392.21 gi|530547816|ref|YP_008428348.1| - 0.0034 17.0 0.1 0.0096 15.6 0.0 1.8 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family MarR_2 PF12802.7 gi|530547816|ref|YP_008428348.1| - 0.0069 16.3 0.0 0.014 15.2 0.0 1.5 1 0 0 1 1 1 1 MarR family Fe_dep_repress PF01325.19 gi|530547816|ref|YP_008428348.1| - 0.016 15.4 0.2 0.051 13.8 0.2 1.9 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain DUF2115 PF09888.9 gi|530547816|ref|YP_008428348.1| - 0.022 15.3 3.1 2.1 8.8 1.0 2.5 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2115) Rrf2 PF02082.20 gi|530547816|ref|YP_008428348.1| - 0.079 13.3 0.3 0.24 11.8 0.1 1.9 2 0 0 2 2 2 0 Transcriptional regulator HTH_Crp_2 PF13545.6 gi|530547816|ref|YP_008428348.1| - 0.12 12.4 0.0 0.31 11.0 0.0 1.7 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain FeoC PF09012.10 gi|530547816|ref|YP_008428348.1| - 0.17 12.0 0.1 0.55 10.3 0.0 1.8 2 0 0 2 2 2 0 FeoC like transcriptional regulator AAA_16 PF13191.6 gi|530547816|ref|YP_008428348.1| - 0.18 12.1 0.0 0.32 11.4 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain RmuC PF02646.16 gi|530547817|ref|YP_008428349.1| - 3.1e-48 164.4 1.7 3.1e-48 164.4 1.7 1.6 1 1 1 2 2 2 1 RmuC family NPV_P10 PF05531.12 gi|530547817|ref|YP_008428349.1| - 4.8e-05 23.8 1.6 0.065 13.7 0.3 3.5 4 0 0 4 4 4 1 Nucleopolyhedrovirus P10 protein CENP-F_leu_zip PF10473.9 gi|530547817|ref|YP_008428349.1| - 0.0045 17.0 1.0 0.0045 17.0 1.0 2.6 3 0 0 3 3 3 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF1664 PF07889.12 gi|530547817|ref|YP_008428349.1| - 0.006 16.6 2.1 0.079 13.0 0.2 3.0 3 0 0 3 3 3 1 Protein of unknown function (DUF1664) DUF3450 PF11932.8 gi|530547817|ref|YP_008428349.1| - 0.0077 15.6 0.0 0.017 14.4 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF3450) Laminin_II PF06009.12 gi|530547817|ref|YP_008428349.1| - 0.012 15.6 5.2 0.015 15.4 0.4 2.9 3 1 1 4 4 3 0 Laminin Domain II DUF4618 PF15397.6 gi|530547817|ref|YP_008428349.1| - 0.014 14.8 2.5 0.049 13.0 0.2 2.5 2 1 0 2 2 2 0 Domain of unknown function (DUF4618) Tropomyosin_1 PF12718.7 gi|530547817|ref|YP_008428349.1| - 0.016 15.4 0.2 0.016 15.4 0.2 2.4 3 0 0 3 3 2 0 Tropomyosin like DUF948 PF06103.11 gi|530547817|ref|YP_008428349.1| - 0.018 15.3 2.2 1.2 9.5 0.1 3.0 3 1 0 3 3 2 0 Bacterial protein of unknown function (DUF948) Baculo_PEP_C PF04513.12 gi|530547817|ref|YP_008428349.1| - 0.047 13.7 2.6 0.19 11.8 0.4 2.6 2 1 1 3 3 3 0 Baculovirus polyhedron envelope protein, PEP, C terminus CLZ PF16526.5 gi|530547817|ref|YP_008428349.1| - 0.055 13.8 0.4 0.88 10.0 0.2 2.7 2 1 0 2 2 2 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels DUF4298 PF14131.6 gi|530547817|ref|YP_008428349.1| - 0.065 13.2 4.4 0.071 13.1 0.1 3.3 4 1 0 4 4 4 0 Domain of unknown function (DUF4298) FlaC_arch PF05377.11 gi|530547817|ref|YP_008428349.1| - 0.079 13.4 4.4 2.4 8.6 0.2 3.6 3 1 1 4 4 4 0 Flagella accessory protein C (FlaC) SCAB_CC PF16712.5 gi|530547817|ref|YP_008428349.1| - 0.097 12.5 1.2 3.2 7.6 0.0 3.0 3 0 0 3 3 3 0 Coiled-coil regions of plant-specific actin-binding protein LPP PF04728.13 gi|530547817|ref|YP_008428349.1| - 0.11 12.9 0.7 14 6.2 0.0 3.2 3 0 0 3 3 3 0 Lipoprotein leucine-zipper DUF2570 PF10828.8 gi|530547817|ref|YP_008428349.1| - 0.14 12.0 5.6 0.57 10.0 0.0 3.2 3 1 1 4 4 4 0 Protein of unknown function (DUF2570) Med22 PF06179.12 gi|530547817|ref|YP_008428349.1| - 0.15 12.3 2.7 0.5 10.6 0.2 2.7 2 1 1 3 3 3 0 Surfeit locus protein 5 subunit 22 of Mediator complex DHR10 PF18595.1 gi|530547817|ref|YP_008428349.1| - 0.15 12.1 0.3 0.15 12.1 0.3 2.6 3 0 0 3 3 3 0 Designed helical repeat protein 10 domain XhlA PF10779.9 gi|530547817|ref|YP_008428349.1| - 0.16 12.2 3.6 5.7 7.2 0.6 3.3 3 1 0 3 3 3 0 Haemolysin XhlA Bacillus_HBL PF05791.11 gi|530547817|ref|YP_008428349.1| - 0.62 9.9 5.1 0.45 10.3 0.8 2.5 2 1 1 3 3 3 0 Bacillus haemolytic enterotoxin (HBL) KxDL PF10241.9 gi|530547817|ref|YP_008428349.1| - 3.3 8.1 7.1 1.9 8.8 0.7 3.2 4 0 0 4 4 3 0 Uncharacterized conserved protein BLOC1_2 PF10046.9 gi|530547817|ref|YP_008428349.1| - 3.7 7.9 9.9 1.2 9.4 0.8 3.6 4 0 0 4 4 4 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF4200 PF13863.6 gi|530547817|ref|YP_008428349.1| - 8.4 6.8 8.9 0.52 10.7 0.7 2.7 3 1 0 3 3 3 0 Domain of unknown function (DUF4200) Phage_integrase PF00589.22 gi|530547818|ref|YP_008428350.1| - 1.5e-10 41.1 0.1 4.2e-10 39.7 0.0 1.7 2 0 0 2 2 2 1 Phage integrase family Phage_int_SAM_4 PF13495.6 gi|530547818|ref|YP_008428350.1| - 3.5 8.2 10.1 3.1 8.3 0.7 3.7 2 1 4 6 6 6 0 Phage integrase, N-terminal SAM-like domain AbiEii PF08843.11 gi|530547819|ref|YP_008428351.1| - 1.3e-19 71.1 0.9 1.8e-19 70.7 0.9 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase AbiEii toxin, Type IV TA system AbiEi_1 PF09407.10 gi|530547821|ref|YP_008428353.1| - 0.00095 19.5 0.0 0.0013 19.0 0.0 1.2 1 0 0 1 1 1 1 AbiEi antitoxin C-terminal domain AbiEi_3_N PF17194.4 gi|530547821|ref|YP_008428353.1| - 0.089 12.8 0.0 3.3 7.8 0.0 2.4 2 0 0 2 2 2 0 Transcriptional regulator, AbiEi antitoxin N-terminal domain Phage_integrase PF00589.22 gi|530547822|ref|YP_008428354.1| - 3.3e-14 53.0 2.1 6.3e-14 52.1 2.1 1.5 1 0 0 1 1 1 1 Phage integrase family Phage_integr_3 PF16795.5 gi|530547822|ref|YP_008428354.1| - 0.00091 19.2 1.9 0.00091 19.2 1.9 2.8 2 1 1 3 3 3 1 Archaeal phage integrase Phage_int_SAM_1 PF02899.17 gi|530547822|ref|YP_008428354.1| - 0.037 14.3 0.3 0.97 9.8 0.0 3.0 3 1 0 3 3 3 0 Phage integrase, N-terminal SAM-like domain CorA PF01544.18 gi|530547823|ref|YP_008428355.1| - 2.4e-58 197.8 3.6 2.9e-58 197.5 3.6 1.0 1 0 0 1 1 1 1 CorA-like Mg2+ transporter protein PAP_central PF04928.17 gi|530547823|ref|YP_008428355.1| - 0.042 12.8 0.0 0.072 12.1 0.0 1.3 1 0 0 1 1 1 0 Poly(A) polymerase central domain HisKA PF00512.25 gi|530547823|ref|YP_008428355.1| - 0.077 13.0 0.3 0.67 10.0 0.1 2.7 3 0 0 3 3 3 0 His Kinase A (phospho-acceptor) domain RHH_6 PF16762.5 gi|530547824|ref|YP_008428356.1| - 0.0015 19.1 0.0 0.0017 18.9 0.0 1.0 1 0 0 1 1 1 1 Ribbon-helix-helix domain VapB_antitoxin PF09957.9 gi|530547824|ref|YP_008428356.1| - 0.021 14.7 2.4 0.26 11.2 2.4 2.0 1 1 0 1 1 1 0 Bacterial antitoxin of type II TA system, VapB PG_binding_2 PF08823.11 gi|530547824|ref|YP_008428356.1| - 0.09 13.1 0.0 0.11 12.9 0.0 1.2 1 0 0 1 1 1 0 Putative peptidoglycan binding domain Asp_Glu_race PF01177.22 gi|530547825|ref|YP_008428357.1| - 1.7e-11 44.4 0.1 1.9e-11 44.3 0.1 1.0 1 0 0 1 1 1 1 Asp/Glu/Hydantoin racemase Asp_Glu_race PF01177.22 gi|530547826|ref|YP_008428358.1| - 5.9e-53 180.0 0.0 6.6e-53 179.8 0.0 1.0 1 0 0 1 1 1 1 Asp/Glu/Hydantoin racemase Pantoate_transf PF02548.15 gi|530547826|ref|YP_008428358.1| - 0.013 14.9 0.0 0.019 14.3 0.0 1.2 1 0 0 1 1 1 0 Ketopantoate hydroxymethyltransferase PEP_mutase PF13714.6 gi|530547826|ref|YP_008428358.1| - 0.03 13.8 0.0 0.037 13.5 0.0 1.1 1 0 0 1 1 1 0 Phosphoenolpyruvate phosphomutase Cob_adeno_trans PF01923.18 gi|530547827|ref|YP_008428359.1| - 1.4e-50 171.6 0.0 1.6e-50 171.5 0.0 1.0 1 0 0 1 1 1 1 Cobalamin adenosyltransferase DUF1451 PF07295.11 gi|530547827|ref|YP_008428359.1| - 0.074 13.1 0.0 0.12 12.5 0.0 1.4 1 0 0 1 1 1 0 Zinc-ribbon containing domain NOG1_N PF17835.1 gi|530547827|ref|YP_008428359.1| - 0.093 12.7 0.3 0.42 10.6 0.1 1.8 2 0 0 2 2 2 0 NOG1 N-terminal helical domain Hormone_3 PF00159.18 gi|530547827|ref|YP_008428359.1| - 0.094 12.8 0.1 2.4 8.3 0.0 2.4 2 0 0 2 2 2 0 Pancreatic hormone peptide PmbA_TldD PF01523.16 gi|530547828|ref|YP_008428360.1| - 1.1e-54 186.1 0.0 1.8e-54 185.5 0.0 1.3 1 0 0 1 1 1 1 Putative modulator of DNA gyrase PmbA_TldD PF01523.16 gi|530547829|ref|YP_008428361.1| - 1.2e-48 166.4 1.0 1.4e-48 166.1 1.0 1.1 1 0 0 1 1 1 1 Putative modulator of DNA gyrase Sm_multidrug_ex PF06695.11 gi|530547830|ref|YP_008428362.1| - 1.7e-29 102.9 2.6 2.1e-29 102.6 2.6 1.1 1 0 0 1 1 1 1 Putative small multi-drug export protein Arif-1 PF06770.11 gi|530547830|ref|YP_008428362.1| - 0.12 12.0 0.4 0.25 11.0 0.4 1.4 1 0 0 1 1 1 0 Actin-rearrangement-inducing factor (Arif-1) Virul_fac_BrkB PF03631.15 gi|530547830|ref|YP_008428362.1| - 0.26 10.9 9.0 0.5 9.9 8.5 1.6 1 1 0 1 1 1 0 Virulence factor BrkB Peptidase_C69 PF03577.15 gi|530547831|ref|YP_008428363.1| - 8.8e-13 47.9 0.1 1.8e-12 46.9 0.0 1.6 2 0 0 2 2 2 1 Peptidase family C69 AAT PF03417.16 gi|530547831|ref|YP_008428363.1| - 1.4e-07 31.4 0.0 4e-06 26.7 0.0 2.2 2 0 0 2 2 2 1 Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase NDK PF00334.19 gi|530547832|ref|YP_008428364.1| - 1.1e-58 197.0 0.0 1.6e-58 196.5 0.0 1.2 1 0 0 1 1 1 1 Nucleoside diphosphate kinase tRNA-synt_1c PF00749.21 gi|530547833|ref|YP_008428365.1| - 4.6e-84 282.0 0.0 6.5e-84 281.5 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1c_C PF03950.18 gi|530547833|ref|YP_008428365.1| - 1.9e-31 109.3 0.6 4.4e-31 108.1 0.0 1.9 2 0 0 2 2 2 1 tRNA synthetases class I (E and Q), anti-codon binding domain Asn_synthase PF00733.21 gi|530547834|ref|YP_008428366.1| - 4.3e-06 26.6 0.2 7.4e-05 22.6 0.0 2.0 1 1 1 2 2 2 1 Asparagine synthase QueC PF06508.13 gi|530547834|ref|YP_008428366.1| - 0.00028 20.4 0.0 0.00035 20.1 0.0 1.3 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.16 gi|530547834|ref|YP_008428366.1| - 0.0045 15.8 0.0 0.0073 15.1 0.0 1.4 1 0 0 1 1 1 1 tRNA methyl transferase ThiI PF02568.14 gi|530547834|ref|YP_008428366.1| - 0.014 15.0 0.0 0.058 13.0 0.0 1.9 2 0 0 2 2 2 0 Thiamine biosynthesis protein (ThiI) PAPS_reduct PF01507.19 gi|530547834|ref|YP_008428366.1| - 0.015 15.4 0.0 0.019 15.0 0.0 1.3 1 0 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family Diphthami_syn_2 PF01902.17 gi|530547834|ref|YP_008428366.1| - 0.024 14.1 0.0 0.037 13.5 0.0 1.4 1 0 0 1 1 1 0 Diphthamide synthase GTP_EFTU PF00009.27 gi|530547835|ref|YP_008428367.1| - 9.8e-34 116.6 0.1 6.2e-32 110.7 0.0 2.9 2 1 0 2 2 2 1 Elongation factor Tu GTP binding domain GTP_EFTU_D4 PF14578.6 gi|530547835|ref|YP_008428367.1| - 5.1e-31 106.4 1.1 5.1e-31 106.4 1.1 2.3 2 0 0 2 2 2 1 Elongation factor Tu domain 4 IF-2 PF11987.8 gi|530547835|ref|YP_008428367.1| - 7.3e-23 80.7 5.0 7.3e-23 80.7 5.0 1.9 2 0 0 2 2 2 1 Translation-initiation factor 2 GTP_EFTU_D2 PF03144.25 gi|530547835|ref|YP_008428367.1| - 2.2e-13 50.4 10.2 2.5e-12 47.0 0.1 4.0 4 1 0 4 4 4 2 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|530547835|ref|YP_008428367.1| - 4.7e-09 36.3 0.1 3.7e-08 33.4 0.0 2.4 2 0 0 2 2 2 1 50S ribosome-binding GTPase Roc PF08477.13 gi|530547835|ref|YP_008428367.1| - 0.0011 19.2 0.0 0.0059 16.8 0.0 2.3 1 1 0 1 1 1 1 Ras of Complex, Roc, domain of DAPkinase ATP_bind_1 PF03029.17 gi|530547835|ref|YP_008428367.1| - 0.013 15.3 0.0 0.085 12.6 0.0 2.2 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein MMR_HSR1_Xtn PF16897.5 gi|530547835|ref|YP_008428367.1| - 0.019 14.9 0.0 0.65 10.0 0.0 3.2 3 0 0 3 3 3 0 C-terminal region of MMR_HSR1 domain Ras PF00071.22 gi|530547835|ref|YP_008428367.1| - 0.02 14.5 0.0 0.065 12.8 0.0 1.8 1 1 0 1 1 1 0 Ras family MobB PF03205.14 gi|530547835|ref|YP_008428367.1| - 0.021 14.7 0.1 29 4.6 0.0 3.7 3 0 0 3 3 3 0 Molybdopterin guanine dinucleotide synthesis protein B Dynamin_N PF00350.23 gi|530547835|ref|YP_008428367.1| - 0.083 12.9 0.0 1.9 8.5 0.0 2.7 1 1 0 2 2 2 0 Dynamin family Na_Ca_ex_C PF16494.5 gi|530547835|ref|YP_008428367.1| - 0.13 12.8 0.3 0.52 10.8 0.3 2.0 1 0 0 1 1 1 0 C-terminal extension of sodium/calcium exchanger domain SWIM PF04434.17 gi|530547836|ref|YP_008428368.1| - 1.1e-05 25.0 0.1 1.9e-05 24.2 0.1 1.4 1 0 0 1 1 1 1 SWIM zinc finger DUF1978 PF09321.10 gi|530547837|ref|YP_008428369.1| - 3.4e-05 23.3 1.0 5.2e-05 22.7 1.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1978) Topoisom_bac PF01131.20 gi|530547838|ref|YP_008428370.1| - 3e-86 290.0 2.3 9.5e-85 285.1 2.3 2.3 1 1 0 1 1 1 1 DNA topoisomerase Toprim PF01751.22 gi|530547838|ref|YP_008428370.1| - 5.4e-26 90.8 0.5 4e-25 88.0 0.0 2.8 3 0 0 3 3 2 1 Toprim domain DEAD PF00270.29 gi|530547838|ref|YP_008428370.1| - 1.2e-12 48.0 0.0 6.4e-12 45.6 0.0 2.2 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|530547838|ref|YP_008428370.1| - 9e-11 42.1 2.8 6.2e-06 26.5 0.0 4.5 4 0 0 4 4 4 2 Helicase conserved C-terminal domain ResIII PF04851.15 gi|530547838|ref|YP_008428370.1| - 8.5e-09 35.6 5.8 7.7e-08 32.5 0.9 2.9 3 0 0 3 3 3 1 Type III restriction enzyme, res subunit zf_Rg PF17915.1 gi|530547838|ref|YP_008428370.1| - 2.4e-06 26.8 0.4 2.4e-06 26.8 0.4 2.1 2 0 0 2 2 2 1 Reverse gyrase zinc finger Zn-ribbon_8 PF09723.10 gi|530547838|ref|YP_008428370.1| - 0.0011 19.0 1.1 0.0011 19.0 1.1 2.2 2 0 0 2 2 2 1 Zinc ribbon domain HypA PF01155.19 gi|530547838|ref|YP_008428370.1| - 0.0032 17.5 0.9 0.034 14.2 0.0 2.7 2 0 0 2 2 2 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA OrfB_Zn_ribbon PF07282.11 gi|530547838|ref|YP_008428370.1| - 0.034 14.1 0.1 0.034 14.1 0.1 2.6 2 0 0 2 2 2 0 Putative transposase DNA-binding domain DctP PF03480.13 gi|530547838|ref|YP_008428370.1| - 0.036 13.4 0.0 0.089 12.1 0.0 1.7 1 0 0 1 1 1 0 Bacterial extracellular solute-binding protein, family 7 SNF2_N PF00176.23 gi|530547838|ref|YP_008428370.1| - 0.093 11.4 0.0 0.19 10.4 0.0 1.4 1 0 0 1 1 1 0 SNF2 family N-terminal domain Glyco_tran_WecB PF03808.13 gi|530547838|ref|YP_008428370.1| - 0.099 12.6 0.3 9.1 6.2 0.0 2.5 1 1 1 2 2 2 0 Glycosyl transferase WecB/TagA/CpsF family TackOD1 PF18551.1 gi|530547838|ref|YP_008428370.1| - 0.13 12.0 1.6 0.25 11.0 0.1 2.2 2 0 0 2 2 2 0 Thaumarchaeal output domain 1 Toprim_4 PF13662.6 gi|530547838|ref|YP_008428370.1| - 0.13 12.7 0.3 1.1 9.8 0.0 2.7 3 0 0 3 3 1 0 Toprim domain CAP_N PF01213.19 gi|530547838|ref|YP_008428370.1| - 0.14 11.7 0.7 0.28 10.6 0.7 1.5 1 0 0 1 1 1 0 Adenylate cyclase associated (CAP) N terminal Apolipoprotein PF01442.18 gi|530547838|ref|YP_008428370.1| - 0.15 11.9 1.9 10 5.9 0.0 3.4 3 0 0 3 3 3 0 Apolipoprotein A1/A4/E domain Rubredoxin_2 PF18073.1 gi|530547838|ref|YP_008428370.1| - 0.26 11.0 9.6 0.42 10.4 5.9 2.3 2 0 0 2 2 2 0 Rubredoxin metal binding domain FYVE PF01363.21 gi|530547838|ref|YP_008428370.1| - 0.34 11.1 2.3 2.1 8.5 0.1 2.2 2 0 0 2 2 2 0 FYVE zinc finger DZR PF12773.7 gi|530547838|ref|YP_008428370.1| - 0.67 10.0 4.5 0.42 10.7 0.3 2.1 2 0 0 2 2 2 0 Double zinc ribbon DUF35_N PF12172.8 gi|530547838|ref|YP_008428370.1| - 0.81 9.6 8.5 0.15 12.0 3.3 2.4 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Zn_Tnp_IS1595 PF12760.7 gi|530547838|ref|YP_008428370.1| - 1.8 8.6 7.8 0.92 9.5 0.1 3.3 3 0 0 3 3 3 0 Transposase zinc-ribbon domain zinc-ribbons_6 PF07191.12 gi|530547838|ref|YP_008428370.1| - 3.4 7.7 5.1 4.9 7.2 0.4 2.3 2 0 0 2 2 2 0 zinc-ribbons TF_Zn_Ribbon PF08271.12 gi|530547838|ref|YP_008428370.1| - 5.4 6.6 6.8 5.1 6.7 0.3 3.2 2 1 1 3 3 3 0 TFIIB zinc-binding XPA_N PF01286.18 gi|530547838|ref|YP_008428370.1| - 6.9 6.8 7.1 18 5.5 0.2 3.1 4 0 0 4 4 2 0 XPA protein N-terminal Succ_CoA_lig PF13607.6 gi|530547839|ref|YP_008428371.1| - 7.1e-56 187.8 1.4 1.2e-54 183.8 0.3 2.7 3 0 0 3 3 3 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|530547839|ref|YP_008428371.1| - 2.6e-22 79.5 0.5 1.7e-20 73.7 0.1 2.5 2 0 0 2 2 2 1 CoA binding domain CoA_binding PF02629.19 gi|530547839|ref|YP_008428371.1| - 6.9e-16 58.7 4.1 8.7e-16 58.4 1.1 2.5 2 0 0 2 2 2 1 CoA binding domain DUF4849 PF16141.5 gi|530547839|ref|YP_008428371.1| - 0.18 11.1 0.0 0.3 10.3 0.0 1.3 1 0 0 1 1 1 0 Putative glycoside hydrolase Family 18, chitinase_18 Semialdhyde_dh PF01118.24 gi|530547839|ref|YP_008428371.1| - 0.74 10.3 2.8 0.74 10.3 0.3 2.3 2 1 0 2 2 2 0 Semialdehyde dehydrogenase, NAD binding domain PsiE PF06146.12 gi|564287477|ref|YP_008428372.3| - 3.4e-12 46.6 8.7 3.4e-12 46.6 8.7 1.8 2 0 0 2 2 2 1 Phosphate-starvation-inducible E DUF2070 PF09843.9 gi|564287477|ref|YP_008428372.3| - 1.4 7.1 8.9 1.6 6.9 8.9 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) XPG_I PF00867.18 gi|530547841|ref|YP_008428373.1| - 9.9e-30 102.8 0.0 2e-29 101.8 0.0 1.5 1 0 0 1 1 1 1 XPG I-region XPG_N PF00752.17 gi|530547841|ref|YP_008428373.1| - 2.3e-23 82.6 0.0 4.7e-23 81.6 0.0 1.5 1 0 0 1 1 1 1 XPG N-terminal domain 5_3_exonuc_N PF02739.16 gi|530547841|ref|YP_008428373.1| - 0.15 12.0 0.0 0.59 10.0 0.0 2.0 1 1 0 1 1 1 0 5'-3' exonuclease, N-terminal resolvase-like domain 5_3_exonuc PF01367.20 gi|530547841|ref|YP_008428373.1| - 0.38 11.4 1.9 0.59 10.8 0.0 2.2 2 0 0 2 2 2 0 5'-3' exonuclease, C-terminal SAM fold TPR_2 PF07719.17 gi|530547841|ref|YP_008428373.1| - 1.2 9.4 5.3 3.8 7.9 1.7 3.0 1 1 1 2 2 2 0 Tetratricopeptide repeat DUF1771 PF08590.10 gi|530547841|ref|YP_008428373.1| - 2.6 8.5 12.7 0.33 11.4 6.8 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1771) TFIIB PF00382.19 gi|530547842|ref|YP_008428374.1| - 3.5e-43 145.5 1.2 9.3e-21 73.7 0.0 2.4 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|530547842|ref|YP_008428374.1| - 8.2e-18 63.6 1.2 1.3e-17 63.0 1.2 1.3 1 0 0 1 1 1 1 TFIIB zinc-binding Sigma70_r4 PF04545.16 gi|530547842|ref|YP_008428374.1| - 5.7e-05 22.6 1.3 0.0034 16.8 0.4 3.7 4 0 0 4 4 4 1 Sigma-70, region 4 zf-RRN7 PF11781.8 gi|530547842|ref|YP_008428374.1| - 0.00021 20.9 1.2 0.00034 20.2 1.2 1.4 1 0 0 1 1 1 1 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 A2L_zn_ribbon PF08792.10 gi|530547842|ref|YP_008428374.1| - 0.00048 19.8 0.6 0.00074 19.2 0.6 1.3 1 0 0 1 1 1 1 A2L zinc ribbon domain Prim_Zn_Ribbon PF08273.12 gi|530547842|ref|YP_008428374.1| - 0.00093 19.4 1.2 0.0017 18.6 1.2 1.4 1 0 0 1 1 1 1 Zinc-binding domain of primase-helicase HARE-HTH PF05066.13 gi|530547842|ref|YP_008428374.1| - 0.0026 18.1 0.1 5.1 7.6 0.0 3.0 2 1 1 3 3 3 1 HB1, ASXL, restriction endonuclease HTH domain HTH_11 PF08279.12 gi|530547842|ref|YP_008428374.1| - 0.0028 17.6 0.1 0.14 12.1 0.0 2.6 2 0 0 2 2 2 1 HTH domain HTH_AsnC-type PF13404.6 gi|530547842|ref|YP_008428374.1| - 0.0039 17.0 0.8 0.64 9.9 0.2 3.4 3 0 0 3 3 3 1 AsnC-type helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 gi|530547842|ref|YP_008428374.1| - 0.0085 15.5 0.1 1 8.9 0.1 3.4 3 1 1 4 4 4 1 Helix-turn-helix domain of transposase family ISL3 GerE PF00196.19 gi|530547842|ref|YP_008428374.1| - 0.0091 15.5 0.0 0.82 9.3 0.0 3.1 3 0 0 3 3 3 1 Bacterial regulatory proteins, luxR family DUF2318 PF10080.9 gi|530547842|ref|YP_008428374.1| - 0.011 15.8 0.4 0.021 14.9 0.4 1.4 1 0 0 1 1 1 0 Predicted membrane protein (DUF2318) HTH_29 PF13551.6 gi|530547842|ref|YP_008428374.1| - 0.012 15.6 0.7 9.2 6.4 0.0 3.9 5 0 0 5 5 4 0 Winged helix-turn helix RB_B PF01857.20 gi|530547842|ref|YP_008428374.1| - 0.012 15.6 0.0 0.02 14.9 0.0 1.5 1 0 0 1 1 1 0 Retinoblastoma-associated protein B domain zf-ribbon_3 PF13248.6 gi|530547842|ref|YP_008428374.1| - 0.016 14.6 2.9 0.17 11.3 2.9 2.2 1 1 0 1 1 1 0 zinc-ribbon domain Lar_restr_allev PF14354.6 gi|530547842|ref|YP_008428374.1| - 0.02 15.3 0.3 0.049 14.0 0.3 1.7 1 0 0 1 1 1 0 Restriction alleviation protein Lar FYDLN_acid PF09538.10 gi|530547842|ref|YP_008428374.1| - 0.021 15.5 0.0 0.039 14.6 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (FYDLN_acid) HTH_36 PF13730.6 gi|530547842|ref|YP_008428374.1| - 0.022 14.7 0.4 0.25 11.3 0.0 2.8 4 0 0 4 4 3 0 Helix-turn-helix domain Cyclin_N PF00134.23 gi|530547842|ref|YP_008428374.1| - 0.033 13.9 0.0 1.4 8.6 0.0 2.2 1 1 1 2 2 2 0 Cyclin, N-terminal domain OrfB_Zn_ribbon PF07282.11 gi|530547842|ref|YP_008428374.1| - 0.036 14.0 0.3 0.074 13.0 0.3 1.5 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Sigma70_r4_2 PF08281.12 gi|530547842|ref|YP_008428374.1| - 0.067 12.9 0.0 1.4 8.7 0.1 2.8 3 0 0 3 3 3 0 Sigma-70, region 4 Ribosomal_S27e PF01667.17 gi|530547842|ref|YP_008428374.1| - 0.19 11.4 0.7 0.34 10.7 0.7 1.3 1 0 0 1 1 1 0 Ribosomal protein S27 Auto_anti-p27 PF06677.12 gi|530547842|ref|YP_008428374.1| - 0.31 11.2 2.0 0.63 10.2 2.0 1.5 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-piccolo PF05715.13 gi|530547842|ref|YP_008428374.1| - 0.73 10.0 2.4 9.8 6.4 2.4 2.2 1 1 0 1 1 1 0 Piccolo Zn-finger Zn_Tnp_IS1595 PF12760.7 gi|530547842|ref|YP_008428374.1| - 4.4 7.4 5.5 0.51 10.3 0.9 1.9 2 0 0 2 2 1 0 Transposase zinc-ribbon domain dsDNA_bind PF01984.20 gi|530547844|ref|YP_008428376.1| - 2e-26 92.4 16.4 2.3e-26 92.3 16.4 1.0 1 0 0 1 1 1 1 Double-stranded DNA-binding domain CHIP_TPR_N PF18391.1 gi|530547844|ref|YP_008428376.1| - 0.12 13.2 15.6 0.052 14.3 9.7 2.7 1 1 1 2 2 2 0 CHIP N-terminal tetratricopeptide repeat domain Lipase_chap PF03280.14 gi|530547844|ref|YP_008428376.1| - 0.29 11.1 12.2 0.16 12.0 10.0 1.6 1 1 1 2 2 2 0 Proteobacterial lipase chaperone protein PP2C_C PF07830.13 gi|530547844|ref|YP_008428376.1| - 0.3 11.6 4.2 0.22 12.0 1.6 2.1 1 1 1 2 2 2 0 Protein serine/threonine phosphatase 2C, C-terminal domain CoA_transf_3 PF02515.17 gi|530547844|ref|YP_008428376.1| - 0.59 9.2 2.6 0.66 9.0 2.6 1.0 1 0 0 1 1 1 0 CoA-transferase family III DUF4713 PF15831.5 gi|530547845|ref|YP_008428377.1| - 0.59 10.6 2.8 19 5.8 0.3 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4713) Ribosomal_S19e PF01090.19 gi|530547846|ref|YP_008428378.1| - 4.5e-58 194.8 0.0 5.1e-58 194.6 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S19e GntR PF00392.21 gi|530547846|ref|YP_008428378.1| - 0.00078 19.0 0.2 0.0024 17.5 0.0 1.9 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_12 PF08461.10 gi|530547846|ref|YP_008428378.1| - 0.0048 16.8 0.0 0.023 14.6 0.0 2.1 3 0 0 3 3 3 1 Ribonuclease R winged-helix domain DUF505 PF04458.12 gi|530547846|ref|YP_008428378.1| - 0.039 12.3 0.0 0.051 11.9 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF505) HTH_45 PF14947.6 gi|530547846|ref|YP_008428378.1| - 0.066 13.2 0.0 0.099 12.6 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix CRS1_YhbY PF01985.21 gi|530547847|ref|YP_008428379.1| - 6e-15 55.2 0.1 6e-15 55.2 0.1 1.5 2 0 0 2 2 2 1 CRS1 / YhbY (CRM) domain Pellino PF04710.14 gi|530547847|ref|YP_008428379.1| - 0.11 11.2 0.0 0.12 11.0 0.0 1.1 1 0 0 1 1 1 0 Pellino DJ-1_PfpI PF01965.24 gi|530547848|ref|YP_008428380.1| - 4.5e-60 202.2 0.0 5e-60 202.0 0.0 1.0 1 0 0 1 1 1 1 DJ-1/PfpI family Catalase_C PF18011.1 gi|530547848|ref|YP_008428380.1| - 0.00054 19.6 0.0 0.00078 19.1 0.0 1.3 1 0 0 1 1 1 1 C-terminal domain found in long catalases GATase PF00117.28 gi|530547848|ref|YP_008428380.1| - 0.0015 18.4 0.1 0.0022 17.8 0.1 1.4 1 1 0 1 1 1 1 Glutamine amidotransferase class-I ThiJ_like PF17124.5 gi|530547848|ref|YP_008428380.1| - 0.0054 16.4 0.0 2.4 7.8 0.0 2.6 1 1 1 2 2 2 2 ThiJ/PfpI family-like GATase_3 PF07685.14 gi|530547848|ref|YP_008428380.1| - 0.14 11.8 0.0 0.18 11.4 0.0 1.3 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain DUF257 PF03192.13 gi|530547849|ref|YP_008428381.1| - 1.7e-37 129.2 1.0 2e-37 129.0 1.0 1.0 1 0 0 1 1 1 1 Pyrococcus protein of unknown function, DUF257 AAA PF00004.29 gi|530547850|ref|YP_008428382.1| - 1.4e-102 339.4 0.0 1.6e-51 174.2 0.0 3.0 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.18 gi|530547850|ref|YP_008428382.1| - 1.7e-36 124.3 0.2 2.5e-35 120.5 1.0 2.6 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), N-terminal domain AAA_lid_3 PF17862.1 gi|530547850|ref|YP_008428382.1| - 3e-33 113.4 8.6 2.8e-18 65.4 0.3 3.2 3 0 0 3 3 2 2 AAA+ lid domain RuvB_N PF05496.12 gi|530547850|ref|YP_008428382.1| - 8.3e-18 64.6 0.2 3.9e-08 33.2 0.0 4.1 4 0 0 4 4 3 2 Holliday junction DNA helicase RuvB P-loop domain AAA_2 PF07724.14 gi|530547850|ref|YP_008428382.1| - 9.1e-17 61.7 0.0 5.5e-09 36.4 0.0 3.0 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) CDC48_2 PF02933.17 gi|530547850|ref|YP_008428382.1| - 3.6e-16 58.7 0.7 1.8e-15 56.4 0.2 2.4 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), domain 2 AAA_16 PF13191.6 gi|530547850|ref|YP_008428382.1| - 1.2e-15 58.3 2.1 2e-06 28.3 0.0 4.4 3 1 1 4 4 4 2 AAA ATPase domain AAA_22 PF13401.6 gi|530547850|ref|YP_008428382.1| - 6.9e-12 45.8 5.9 0.00072 19.8 0.0 5.5 4 3 2 6 6 5 2 AAA domain AAA_14 PF13173.6 gi|530547850|ref|YP_008428382.1| - 1.6e-11 44.4 0.0 1.6e-05 24.9 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_5 PF07728.14 gi|530547850|ref|YP_008428382.1| - 1.6e-11 44.3 2.5 0.00017 21.6 0.1 4.4 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) TIP49 PF06068.13 gi|530547850|ref|YP_008428382.1| - 4.9e-11 42.4 0.1 0.00031 20.1 0.0 3.0 3 0 0 3 3 2 2 TIP49 P-loop domain AAA_33 PF13671.6 gi|530547850|ref|YP_008428382.1| - 5.6e-11 42.8 0.0 0.00039 20.6 0.0 2.7 2 0 0 2 2 2 2 AAA domain Vps4_C PF09336.10 gi|530547850|ref|YP_008428382.1| - 1.6e-10 40.8 0.2 2.9e-05 24.0 0.0 3.0 2 0 0 2 2 2 2 Vps4 C terminal oligomerisation domain AAA_18 PF13238.6 gi|530547850|ref|YP_008428382.1| - 2.9e-08 34.3 0.0 0.017 15.7 0.0 3.1 2 0 0 2 2 2 2 AAA domain RNA_helicase PF00910.22 gi|530547850|ref|YP_008428382.1| - 4.2e-08 33.5 0.0 0.013 15.9 0.0 2.6 2 0 0 2 2 2 2 RNA helicase IstB_IS21 PF01695.17 gi|530547850|ref|YP_008428382.1| - 4.8e-08 32.9 0.1 0.0091 15.7 0.0 2.6 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_24 PF13479.6 gi|530547850|ref|YP_008428382.1| - 5.9e-08 32.7 0.0 0.0058 16.4 0.0 2.6 2 0 0 2 2 2 2 AAA domain Sigma54_activat PF00158.26 gi|530547850|ref|YP_008428382.1| - 1e-07 31.8 0.1 0.031 14.0 0.0 3.9 3 1 0 3 3 3 2 Sigma-54 interaction domain Mg_chelatase PF01078.21 gi|530547850|ref|YP_008428382.1| - 5.2e-07 29.3 0.7 0.031 13.7 0.1 2.7 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_28 PF13521.6 gi|530547850|ref|YP_008428382.1| - 7.5e-07 29.5 0.0 0.023 14.9 0.0 3.0 2 0 0 2 2 2 2 AAA domain AAA_25 PF13481.6 gi|530547850|ref|YP_008428382.1| - 8.8e-07 28.7 6.1 0.1 12.2 2.1 4.5 3 1 0 3 3 3 2 AAA domain Bac_DnaA PF00308.18 gi|530547850|ref|YP_008428382.1| - 1.4e-06 28.3 0.0 0.033 14.0 0.0 3.3 3 1 0 3 3 3 2 Bacterial dnaA protein DUF815 PF05673.13 gi|530547850|ref|YP_008428382.1| - 2.2e-06 27.0 0.0 0.038 13.1 0.0 2.4 2 0 0 2 2 2 2 Protein of unknown function (DUF815) NACHT PF05729.12 gi|530547850|ref|YP_008428382.1| - 3.2e-06 27.2 0.1 1 9.3 0.0 4.3 4 0 0 4 4 4 2 NACHT domain ATPase_2 PF01637.18 gi|530547850|ref|YP_008428382.1| - 4.4e-06 26.8 2.8 0.0082 16.1 0.0 3.8 3 1 0 3 3 3 2 ATPase domain predominantly from Archaea AAA_7 PF12775.7 gi|530547850|ref|YP_008428382.1| - 5.2e-06 26.1 0.0 0.081 12.4 0.0 2.6 2 1 0 2 2 2 2 P-loop containing dynein motor region ATPase PF06745.13 gi|530547850|ref|YP_008428382.1| - 8.8e-06 25.2 3.8 0.25 10.7 0.1 4.2 2 2 1 4 4 4 2 KaiC ABC_tran PF00005.27 gi|530547850|ref|YP_008428382.1| - 1.2e-05 25.8 0.1 0.36 11.3 0.0 3.1 3 0 0 3 3 2 2 ABC transporter TsaE PF02367.17 gi|530547850|ref|YP_008428382.1| - 1.6e-05 24.9 0.0 0.14 12.1 0.0 2.8 2 1 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE Zeta_toxin PF06414.12 gi|530547850|ref|YP_008428382.1| - 5.6e-05 22.5 0.7 0.29 10.4 0.0 3.0 3 0 0 3 3 2 2 Zeta toxin PhoH PF02562.16 gi|530547850|ref|YP_008428382.1| - 6.3e-05 22.5 1.7 0.36 10.3 0.0 3.1 3 0 0 3 3 2 2 PhoH-like protein DUF2075 PF09848.9 gi|530547850|ref|YP_008428382.1| - 7.2e-05 22.2 0.0 0.09 12.0 0.0 2.4 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) AAA_3 PF07726.11 gi|530547850|ref|YP_008428382.1| - 7.4e-05 22.6 0.0 0.5 10.2 0.0 2.7 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) Parvo_NS1 PF01057.17 gi|530547850|ref|YP_008428382.1| - 8.3e-05 21.8 0.2 0.4 9.7 0.0 2.3 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 AAA_11 PF13086.6 gi|530547850|ref|YP_008428382.1| - 0.00053 19.9 1.1 0.57 9.9 0.1 2.8 3 1 0 3 3 2 2 AAA domain NB-ARC PF00931.22 gi|530547850|ref|YP_008428382.1| - 0.00056 19.2 0.0 0.75 8.9 0.0 2.8 2 0 0 2 2 2 2 NB-ARC domain AAA_30 PF13604.6 gi|530547850|ref|YP_008428382.1| - 0.00063 19.5 2.1 0.99 9.1 0.1 3.4 2 2 0 2 2 2 2 AAA domain AAA_17 PF13207.6 gi|530547850|ref|YP_008428382.1| - 0.0012 19.2 0.2 2.8 8.4 0.0 3.5 3 0 0 3 3 3 1 AAA domain AAA_19 PF13245.6 gi|530547850|ref|YP_008428382.1| - 0.0027 18.1 3.9 1.3 9.3 0.3 3.3 2 2 1 3 3 2 1 AAA domain NTPase_1 PF03266.15 gi|530547850|ref|YP_008428382.1| - 0.0059 16.5 3.9 7.8 6.4 0.0 4.4 3 2 2 5 5 4 0 NTPase Zot PF05707.12 gi|530547850|ref|YP_008428382.1| - 0.014 15.0 0.0 0.65 9.6 0.0 2.9 2 1 1 3 3 3 0 Zonular occludens toxin (Zot) Sigma54_activ_2 PF14532.6 gi|530547850|ref|YP_008428382.1| - 0.016 15.3 0.0 5.8 7.0 0.0 2.6 2 0 0 2 2 2 0 Sigma-54 interaction domain T2SSE PF00437.20 gi|530547850|ref|YP_008428382.1| - 0.018 14.1 0.0 6.4 5.8 0.0 2.6 2 1 0 2 2 2 0 Type II/IV secretion system protein DUF1905 PF08922.11 gi|530547850|ref|YP_008428382.1| - 0.023 14.8 0.5 13 6.0 0.0 3.0 3 0 0 3 3 2 0 Domain of unknown function (DUF1905) Cytidylate_kin PF02224.18 gi|530547850|ref|YP_008428382.1| - 0.023 14.4 0.1 5.9 6.6 0.0 2.8 2 0 0 2 2 2 0 Cytidylate kinase Viral_helicase1 PF01443.18 gi|530547850|ref|YP_008428382.1| - 0.031 14.0 0.0 1.7 8.3 0.0 2.2 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase ATP-synt_ab PF00006.25 gi|530547850|ref|YP_008428382.1| - 0.035 13.8 0.0 2.5 7.7 0.0 2.3 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain AFG1_ATPase PF03969.16 gi|530547850|ref|YP_008428382.1| - 0.058 12.3 0.0 7.2 5.4 0.0 2.4 2 0 0 2 2 2 0 AFG1-like ATPase ResIII PF04851.15 gi|530547850|ref|YP_008428382.1| - 0.061 13.3 0.0 9.2 6.2 0.0 2.7 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit cobW PF02492.19 gi|530547850|ref|YP_008428382.1| - 0.081 12.5 0.1 16 5.1 0.0 3.1 3 0 0 3 3 3 0 CobW/HypB/UreG, nucleotide-binding domain DAP3 PF10236.9 gi|530547850|ref|YP_008428382.1| - 0.088 12.0 0.0 23 4.0 0.0 3.0 3 1 0 3 3 3 0 Mitochondrial ribosomal death-associated protein 3 IPT PF01745.16 gi|530547850|ref|YP_008428382.1| - 0.098 12.0 0.5 15 4.9 0.0 3.0 3 0 0 3 3 3 0 Isopentenyl transferase SKI PF01202.22 gi|530547850|ref|YP_008428382.1| - 0.1 12.7 1.1 13 5.8 0.0 3.4 4 0 0 4 4 2 0 Shikimate kinase AAA_29 PF13555.6 gi|530547850|ref|YP_008428382.1| - 0.12 12.2 0.1 24 4.8 0.0 2.5 2 0 0 2 2 2 0 P-loop containing region of AAA domain TetR_C_30 PF17939.1 gi|530547850|ref|YP_008428382.1| - 0.13 12.5 0.9 35 4.7 0.2 3.8 3 1 1 4 4 3 0 Tetracyclin repressor-like, C-terminal domain TetR_C_11 PF16859.5 gi|530547850|ref|YP_008428382.1| - 0.56 10.5 5.8 2.1 8.7 0.9 3.0 2 0 0 2 2 2 0 Tetracyclin repressor-like, C-terminal domain HSP20 PF00011.21 gi|530547851|ref|YP_008428383.1| - 3.2e-20 72.2 1.2 4e-20 71.9 1.2 1.2 1 0 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|530547851|ref|YP_008428383.1| - 8.5e-15 54.1 0.1 1.2e-14 53.6 0.1 1.3 1 0 0 1 1 1 1 HSP20-like domain found in ArsA CS PF04969.16 gi|530547851|ref|YP_008428383.1| - 0.0015 19.5 0.0 0.0023 18.9 0.0 1.2 1 0 0 1 1 1 1 CS domain GvpH PF05455.11 gi|530547851|ref|YP_008428383.1| - 0.0087 16.2 0.0 0.086 12.9 0.0 2.0 2 0 0 2 2 2 1 GvpH PIH1_CS PF18201.1 gi|530547851|ref|YP_008428383.1| - 0.013 15.9 0.0 0.024 15.0 0.0 1.4 1 0 0 1 1 1 0 PIH1 CS-like domain Ribosomal_L35Ae PF01247.18 gi|564287478|ref|YP_008428384.3| - 1.1e-19 70.4 0.0 1.5e-19 70.0 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L35Ae RimM PF01782.18 gi|564287478|ref|YP_008428384.3| - 2e-09 37.6 0.0 0.00021 21.4 0.1 2.1 2 0 0 2 2 2 2 RimM N-terminal domain TRM PF02005.16 gi|530547853|ref|YP_008428385.1| - 2.6e-119 398.7 0.0 3.5e-119 398.4 0.0 1.1 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Met_10 PF02475.16 gi|530547853|ref|YP_008428385.1| - 2.2e-06 27.6 0.0 3.4e-06 26.9 0.0 1.3 1 0 0 1 1 1 1 Met-10+ like-protein Cons_hypoth95 PF03602.15 gi|530547853|ref|YP_008428385.1| - 0.12 12.0 0.0 0.26 10.9 0.0 1.5 1 0 0 1 1 1 0 Conserved hypothetical protein 95 MatE PF01554.18 gi|530547854|ref|YP_008428386.1| - 2.6e-72 241.7 33.3 6.1e-38 130.0 10.9 2.9 3 0 0 3 3 3 2 MatE MurJ PF03023.14 gi|530547854|ref|YP_008428386.1| - 7.1e-09 34.8 24.0 5.9e-07 28.5 11.2 2.8 2 2 0 2 2 2 2 Lipid II flippase MurJ Polysacc_synt_C PF14667.6 gi|530547854|ref|YP_008428386.1| - 1.2e-05 25.4 8.7 1.2e-05 25.4 8.7 4.2 3 2 1 4 4 4 2 Polysaccharide biosynthesis C-terminal domain VirB3 PF05101.13 gi|530547854|ref|YP_008428386.1| - 0.022 15.0 0.8 0.022 15.0 0.8 5.0 4 2 0 4 4 4 0 Type IV secretory pathway, VirB3-like protein NMT1_2 PF13379.6 gi|530547855|ref|YP_008428387.1| - 8.4e-10 38.8 0.0 4.3e-08 33.2 0.0 2.1 1 1 0 1 1 1 1 NMT1-like family GntR PF00392.21 gi|530547855|ref|YP_008428387.1| - 0.0014 18.3 0.0 0.0032 17.1 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family NMT1 PF09084.11 gi|530547855|ref|YP_008428387.1| - 0.0056 16.6 0.0 0.06 13.3 0.0 2.0 2 0 0 2 2 2 1 NMT1/THI5 like TBPIP PF07106.13 gi|530547855|ref|YP_008428387.1| - 0.0085 16.0 0.0 0.023 14.6 0.0 1.8 1 1 0 1 1 1 1 TBPIP/Hop2 winged helix domain SBP_bac_3 PF00497.20 gi|530547855|ref|YP_008428387.1| - 0.016 14.7 0.0 2.8 7.3 0.0 2.2 2 0 0 2 2 2 0 Bacterial extracellular solute-binding proteins, family 3 DUF5603 PF18231.1 gi|530547855|ref|YP_008428387.1| - 0.024 14.9 1.4 0.77 10.1 0.1 3.1 3 0 0 3 3 3 0 Domain of unknown function (DUF5603) TrmB PF01978.19 gi|530547855|ref|YP_008428387.1| - 0.033 14.1 0.3 0.38 10.7 0.0 2.8 3 0 0 3 3 3 0 Sugar-specific transcriptional regulator TrmB TFA2_Winged_2 PF18121.1 gi|530547855|ref|YP_008428387.1| - 0.099 12.3 0.3 1.9 8.2 0.1 2.9 3 0 0 3 3 3 0 TFA2 Winged helix domain 2 HTH_CodY PF08222.11 gi|530547855|ref|YP_008428387.1| - 0.1 12.2 0.0 0.49 10.0 0.0 2.1 2 0 0 2 2 2 0 CodY helix-turn-helix domain Ribosomal_L37e PF01907.19 gi|530547856|ref|YP_008428388.1| - 5.5e-21 74.5 12.6 6.4e-21 74.3 12.6 1.1 1 0 0 1 1 1 1 Ribosomal protein L37e HypA PF01155.19 gi|530547856|ref|YP_008428388.1| - 0.1 12.6 0.6 0.13 12.3 0.6 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA LSM PF01423.22 gi|530547857|ref|YP_008428389.1| - 9.8e-20 70.0 0.1 1.1e-19 69.9 0.1 1.0 1 0 0 1 1 1 1 LSM domain SM-ATX PF14438.6 gi|530547857|ref|YP_008428389.1| - 0.036 14.2 0.0 0.039 14.1 0.0 1.1 1 0 0 1 1 1 0 Ataxin 2 SM domain MMR_HSR1_C PF08438.10 gi|530547858|ref|YP_008428390.1| - 1.9e-35 121.8 0.0 3.2e-35 121.1 0.0 1.4 1 0 0 1 1 1 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.23 gi|530547858|ref|YP_008428390.1| - 2.4e-20 72.7 0.0 2.6e-19 69.4 0.0 2.2 1 1 0 2 2 2 1 50S ribosome-binding GTPase TGS PF02824.21 gi|530547858|ref|YP_008428390.1| - 5e-12 45.7 0.0 1.1e-11 44.6 0.0 1.6 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.18 gi|530547858|ref|YP_008428390.1| - 8.5e-10 38.4 0.1 2.8e-07 30.2 0.0 2.4 2 0 0 2 2 2 2 Ferrous iron transport protein B AAA_33 PF13671.6 gi|530547858|ref|YP_008428390.1| - 0.069 13.3 0.0 1.2 9.3 0.0 2.2 2 0 0 2 2 2 0 AAA domain YchF-GTPase_C PF06071.13 gi|530547858|ref|YP_008428390.1| - 0.12 12.6 0.0 1.5 9.1 0.0 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF933) MMR_HSR1_Xtn PF16897.5 gi|530547858|ref|YP_008428390.1| - 0.15 12.1 0.0 0.28 11.2 0.0 1.4 1 0 0 1 1 1 0 C-terminal region of MMR_HSR1 domain CYTH PF01928.21 gi|530547859|ref|YP_008428391.1| - 1.2e-25 90.5 6.5 1.4e-25 90.3 6.5 1.0 1 0 0 1 1 1 1 CYTH domain NTP_transf_5 PF14907.6 gi|530547859|ref|YP_008428391.1| - 0.011 15.4 0.7 0.13 11.9 0.1 2.1 1 1 1 2 2 2 0 Uncharacterised nucleotidyltransferase HEPN_DZIP3 PF18738.1 gi|530547859|ref|YP_008428391.1| - 0.077 12.7 0.6 1.2 8.8 0.0 2.4 1 1 0 2 2 2 0 DZIP3/ hRUL138-like HEPN Glyoxalase_5 PF14696.6 gi|530547859|ref|YP_008428391.1| - 0.092 12.9 0.1 0.16 12.1 0.1 1.3 1 0 0 1 1 1 0 Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal HTH_24 PF13412.6 gi|530547860|ref|YP_008428392.1| - 5.6e-16 57.8 0.5 8.7e-16 57.2 0.5 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|530547860|ref|YP_008428392.1| - 1.6e-12 47.0 0.2 2.5e-12 46.4 0.2 1.3 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_20 PF12840.7 gi|530547860|ref|YP_008428392.1| - 3.1e-07 30.4 0.0 5.1e-07 29.7 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|530547860|ref|YP_008428392.1| - 5.3e-06 26.1 0.0 9.3e-06 25.4 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_27 PF13463.6 gi|530547860|ref|YP_008428392.1| - 4.5e-05 23.8 0.1 9.8e-05 22.8 0.1 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.7 gi|530547860|ref|YP_008428392.1| - 8.2e-05 22.4 0.1 0.00016 21.5 0.1 1.5 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 gi|530547860|ref|YP_008428392.1| - 0.00011 22.0 0.0 0.00019 21.2 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|530547860|ref|YP_008428392.1| - 0.00011 22.0 0.1 0.00025 20.9 0.0 1.6 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.12 gi|530547860|ref|YP_008428392.1| - 0.00036 20.4 0.3 0.00064 19.6 0.3 1.4 1 0 0 1 1 1 1 HTH domain HTH_23 PF13384.6 gi|530547860|ref|YP_008428392.1| - 0.00075 19.2 0.0 0.0018 18.0 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain Sigma70_r4 PF04545.16 gi|530547860|ref|YP_008428392.1| - 0.00094 18.7 0.1 0.0018 17.8 0.1 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 Penicillinase_R PF03965.16 gi|530547860|ref|YP_008428392.1| - 0.0016 18.8 0.0 0.0031 17.8 0.0 1.5 1 0 0 1 1 1 1 Penicillinase repressor RuvB_C PF05491.13 gi|530547860|ref|YP_008428392.1| - 0.0019 18.0 0.2 0.0087 15.9 0.1 2.0 2 0 0 2 2 2 1 RuvB C-terminal winged helix domain NapD PF03927.13 gi|530547860|ref|YP_008428392.1| - 0.0039 17.2 0.0 0.0076 16.3 0.0 1.4 1 0 0 1 1 1 1 NapD protein AsnC_trans_reg PF01037.21 gi|530547860|ref|YP_008428392.1| - 0.0064 16.4 0.0 0.014 15.3 0.0 1.5 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain AMP-binding_C PF13193.6 gi|530547860|ref|YP_008428392.1| - 0.014 16.4 1.1 1.5 9.8 0.0 3.1 1 1 3 4 4 4 0 AMP-binding enzyme C-terminal domain MarR PF01047.22 gi|530547860|ref|YP_008428392.1| - 0.017 15.0 0.4 0.031 14.2 0.1 1.5 2 0 0 2 2 1 0 MarR family HTH_DeoR PF08220.12 gi|530547860|ref|YP_008428392.1| - 0.028 14.2 0.1 0.052 13.3 0.1 1.4 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_Tnp_Tc3_1 PF11427.8 gi|530547860|ref|YP_008428392.1| - 0.029 14.2 0.0 0.061 13.2 0.0 1.5 1 0 0 1 1 1 0 Tc3 transposase HTH_38 PF13936.6 gi|530547860|ref|YP_008428392.1| - 0.03 14.1 0.1 0.092 12.5 0.1 1.9 1 1 0 1 1 1 0 Helix-turn-helix domain Fe_dep_repress PF01325.19 gi|530547860|ref|YP_008428392.1| - 0.037 14.2 0.0 0.1 12.8 0.0 1.7 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain Thioredoxin_6 PF13848.6 gi|530547860|ref|YP_008428392.1| - 0.066 13.1 0.1 0.1 12.5 0.1 1.4 1 0 0 1 1 1 0 Thioredoxin-like domain Sigma70_r4_2 PF08281.12 gi|530547860|ref|YP_008428392.1| - 0.067 12.9 0.0 0.12 12.0 0.0 1.6 1 1 0 1 1 1 0 Sigma-70, region 4 B-block_TFIIIC PF04182.12 gi|530547860|ref|YP_008428392.1| - 0.16 12.2 0.0 0.22 11.7 0.0 1.4 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC LexA_DNA_bind PF01726.16 gi|530547860|ref|YP_008428392.1| - 0.18 11.6 0.3 4.7 7.1 0.0 2.3 2 0 0 2 2 2 0 LexA DNA binding domain Flavoprotein PF02441.19 gi|530547861|ref|YP_008428393.1| - 2.4e-30 105.4 0.1 3e-30 105.0 0.1 1.1 1 0 0 1 1 1 1 Flavoprotein DisA_N PF02457.16 gi|530547862|ref|YP_008428394.1| - 7.4e-24 83.6 0.0 1.3e-23 82.9 0.0 1.4 1 0 0 1 1 1 1 DisA bacterial checkpoint controller nucleotide-binding UIM PF02809.20 gi|530547862|ref|YP_008428394.1| - 0.22 11.5 1.7 0.74 9.9 0.1 2.3 2 0 0 2 2 2 0 Ubiquitin interaction motif NTP_transferase PF00483.23 gi|530547863|ref|YP_008428395.1| - 2.4e-48 164.9 0.0 3.1e-48 164.5 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.24 gi|530547863|ref|YP_008428395.1| - 2.1e-11 43.0 7.4 6.5e-05 22.5 1.4 3.3 2 1 2 4 4 4 4 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.7 gi|530547863|ref|YP_008428395.1| - 6.3e-10 39.6 0.0 8.4e-10 39.2 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|530547863|ref|YP_008428395.1| - 0.0081 15.9 0.0 0.014 15.2 0.0 1.3 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CTP_transf_3 PF02348.19 gi|530547863|ref|YP_008428395.1| - 0.012 15.5 0.1 0.048 13.6 0.0 1.9 2 0 0 2 2 2 0 Cytidylyltransferase Hexapep_2 PF14602.6 gi|530547863|ref|YP_008428395.1| - 1.1 9.1 5.9 12 5.7 1.9 3.4 2 2 1 3 3 3 0 Hexapeptide repeat of succinyl-transferase FeoC PF09012.10 gi|530547864|ref|YP_008428396.1| - 2.1e-05 24.5 0.1 2.4e-05 24.3 0.1 1.2 1 0 0 1 1 1 1 FeoC like transcriptional regulator DUF4423 PF14394.6 gi|530547864|ref|YP_008428396.1| - 0.00024 20.8 0.0 0.00027 20.7 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) MarR_2 PF12802.7 gi|530547864|ref|YP_008428396.1| - 0.00026 20.8 0.0 0.00031 20.6 0.0 1.1 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|530547864|ref|YP_008428396.1| - 0.00033 20.5 0.1 0.00039 20.2 0.1 1.1 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB DUF2250 PF10007.9 gi|530547864|ref|YP_008428396.1| - 0.0015 18.6 0.0 0.0016 18.5 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_20 PF12840.7 gi|530547864|ref|YP_008428396.1| - 0.0019 18.2 0.0 0.0022 18.0 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|530547864|ref|YP_008428396.1| - 0.0031 17.0 0.2 0.0045 16.5 0.2 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 gi|530547864|ref|YP_008428396.1| - 0.0048 16.7 0.0 0.0057 16.4 0.0 1.1 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_11 PF08279.12 gi|530547864|ref|YP_008428396.1| - 0.0074 16.2 0.2 0.0088 16.0 0.2 1.1 1 0 0 1 1 1 1 HTH domain Sigma70_r3 PF04539.16 gi|530547864|ref|YP_008428396.1| - 0.0076 16.3 0.2 0.014 15.5 0.2 1.4 1 0 0 1 1 1 1 Sigma-70 region 3 HTH_28 PF13518.6 gi|530547864|ref|YP_008428396.1| - 0.018 15.2 0.0 0.023 14.8 0.0 1.1 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 gi|530547864|ref|YP_008428396.1| - 0.032 13.7 0.0 0.049 13.0 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_5 PF01022.20 gi|530547864|ref|YP_008428396.1| - 0.04 13.8 0.1 0.067 13.1 0.1 1.4 1 1 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_9 PF08221.11 gi|530547864|ref|YP_008428396.1| - 0.041 14.0 0.0 0.052 13.6 0.0 1.2 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain Rrf2 PF02082.20 gi|530547864|ref|YP_008428396.1| - 0.05 14.0 0.1 0.061 13.7 0.1 1.1 1 0 0 1 1 1 0 Transcriptional regulator Cas_Cas4 PF01930.17 gi|530547864|ref|YP_008428396.1| - 0.054 13.6 0.0 0.057 13.5 0.0 1.0 1 0 0 1 1 1 0 Domain of unknown function DUF83 RNA_pol_Rpc34 PF05158.12 gi|530547864|ref|YP_008428396.1| - 0.054 12.9 0.1 0.079 12.3 0.1 1.4 1 1 0 1 1 1 0 RNA polymerase Rpc34 subunit Exonuc_VII_S PF02609.16 gi|530547864|ref|YP_008428396.1| - 0.067 13.3 0.3 0.37 10.9 0.1 2.0 1 1 1 2 2 2 0 Exonuclease VII small subunit DUF2802 PF10975.8 gi|530547864|ref|YP_008428396.1| - 0.071 13.3 0.1 0.11 12.6 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2802) PheRS_DBD1 PF18552.1 gi|530547864|ref|YP_008428396.1| - 0.073 12.8 0.1 0.086 12.6 0.1 1.1 1 0 0 1 1 1 0 PheRS DNA binding domain 1 PUB PF09409.10 gi|530547864|ref|YP_008428396.1| - 0.11 12.4 0.0 0.13 12.2 0.0 1.2 1 0 0 1 1 1 0 PUB domain FaeA PF04703.12 gi|530547864|ref|YP_008428396.1| - 0.11 12.8 0.0 0.13 12.6 0.0 1.1 1 0 0 1 1 1 0 FaeA-like protein MarR PF01047.22 gi|530547864|ref|YP_008428396.1| - 0.12 12.3 0.1 0.16 11.9 0.1 1.2 1 0 0 1 1 1 0 MarR family HTH_36 PF13730.6 gi|530547864|ref|YP_008428396.1| - 0.12 12.3 0.0 0.2 11.7 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain FeoB_N PF02421.18 gi|530547865|ref|YP_008428397.1| - 3.4e-64 215.1 0.4 5.3e-64 214.5 0.4 1.3 1 0 0 1 1 1 1 Ferrous iron transport protein B Gate PF07670.14 gi|530547865|ref|YP_008428397.1| - 2.4e-43 146.9 14.0 1.1e-27 96.5 2.7 2.8 2 0 0 2 2 2 2 Nucleoside recognition MMR_HSR1 PF01926.23 gi|530547865|ref|YP_008428397.1| - 5e-19 68.5 0.1 1.1e-18 67.3 0.1 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_C PF07664.12 gi|530547865|ref|YP_008428397.1| - 6.1e-18 64.3 2.0 2.9e-17 62.1 0.3 2.9 2 0 0 2 2 2 1 Ferrous iron transport protein B C terminus FeoB_Cyto PF17910.1 gi|530547865|ref|YP_008428397.1| - 2e-16 60.3 2.3 4.2e-16 59.3 2.3 1.6 1 0 0 1 1 1 1 FeoB cytosolic helical domain RsgA_GTPase PF03193.16 gi|530547865|ref|YP_008428397.1| - 1.1e-06 28.6 0.1 0.0032 17.4 0.0 2.4 2 0 0 2 2 2 2 RsgA GTPase SRPRB PF09439.10 gi|530547865|ref|YP_008428397.1| - 8.3e-06 25.3 0.4 2e-05 24.1 0.0 1.7 2 0 0 2 2 2 1 Signal recognition particle receptor beta subunit PduV-EutP PF10662.9 gi|530547865|ref|YP_008428397.1| - 0.00035 20.3 0.1 0.0036 17.1 0.1 2.7 3 1 0 3 3 3 1 Ethanolamine utilisation - propanediol utilisation GTP_EFTU PF00009.27 gi|530547865|ref|YP_008428397.1| - 0.0033 17.0 0.4 0.042 13.4 0.2 2.5 1 1 1 2 2 2 1 Elongation factor Tu GTP binding domain ATP_bind_1 PF03029.17 gi|530547865|ref|YP_008428397.1| - 0.019 14.8 0.4 0.24 11.2 0.1 2.5 2 1 0 2 2 2 0 Conserved hypothetical ATP binding protein Ras PF00071.22 gi|530547865|ref|YP_008428397.1| - 0.025 14.2 0.0 0.12 11.9 0.0 2.1 1 1 0 1 1 1 0 Ras family FeoA PF04023.14 gi|530547866|ref|YP_008428398.1| - 3.5e-19 68.8 0.9 3.8e-19 68.7 0.9 1.0 1 0 0 1 1 1 1 FeoA domain DUF2931 PF11153.8 gi|530547866|ref|YP_008428398.1| - 0.08 12.6 0.1 0.08 12.6 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2931) DUF4870 PF09685.10 gi|530547867|ref|YP_008428399.1| - 3.3e-08 33.6 4.5 4.2e-08 33.3 4.5 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4870) Cytochrome_B PF00033.19 gi|530547867|ref|YP_008428399.1| - 0.0095 15.8 1.9 0.0095 15.8 1.9 1.8 1 1 1 2 2 2 1 Cytochrome b/b6/petB TIC20 PF16166.5 gi|530547867|ref|YP_008428399.1| - 0.018 14.8 1.2 0.032 14.0 1.2 1.4 1 1 0 1 1 1 0 Chloroplast import apparatus Tic20-like DUF3180 PF11377.8 gi|530547867|ref|YP_008428399.1| - 0.78 9.9 4.3 11 6.1 0.3 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3180) AI-2E_transport PF01594.16 gi|530547868|ref|YP_008428400.1| - 1.4e-40 139.5 30.3 1.6e-40 139.2 30.3 1.0 1 0 0 1 1 1 1 AI-2E family transporter SCF PF02404.15 gi|530547868|ref|YP_008428400.1| - 0.15 11.4 0.7 0.25 10.7 0.1 1.7 2 0 0 2 2 2 0 Stem cell factor Ceramidase PF05875.12 gi|530547868|ref|YP_008428400.1| - 0.87 9.0 6.3 0.81 9.1 3.9 1.9 2 0 0 2 2 2 0 Ceramidase Ph1570 PF09638.10 gi|530547869|ref|YP_008428401.1| - 4.2e-16 59.2 0.6 4.4e-16 59.1 0.6 1.0 1 0 0 1 1 1 1 Ph1570 protein Ph1570 PF09638.10 gi|530547870|ref|YP_008428402.1| - 2.5e-43 147.6 1.1 3e-43 147.4 1.1 1.0 1 0 0 1 1 1 1 Ph1570 protein Peptidase_S49 PF01343.18 gi|530547871|ref|YP_008428403.1| - 3.1e-40 137.6 1.6 9.3e-40 136.1 0.1 2.1 2 0 0 2 2 2 1 Peptidase family S49 CLP_protease PF00574.23 gi|530547871|ref|YP_008428403.1| - 1.6e-10 41.1 0.0 4.3e-10 39.8 0.0 1.6 1 1 1 2 2 2 1 Clp protease SDH_sah PF01972.16 gi|530547871|ref|YP_008428403.1| - 5.1e-06 25.7 0.0 6.8e-06 25.3 0.0 1.3 1 0 0 1 1 1 1 Serine dehydrogenase proteinase ECH_1 PF00378.20 gi|530547871|ref|YP_008428403.1| - 0.0069 15.7 1.5 0.011 15.1 0.1 2.0 3 0 0 3 3 3 1 Enoyl-CoA hydratase/isomerase DUF1151 PF06625.11 gi|530547871|ref|YP_008428403.1| - 0.015 15.2 0.4 0.025 14.5 0.4 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1151) DUF3896 PF13035.6 gi|530547871|ref|YP_008428403.1| - 0.031 14.4 0.2 0.031 14.4 0.2 2.3 2 1 1 3 3 3 0 Protein of unknown function (DUF3896) Imm7 PF15585.6 gi|530547871|ref|YP_008428403.1| - 0.074 13.3 0.2 0.46 10.8 0.0 2.2 2 0 0 2 2 2 0 Immunity protein 7 Baculo_E25 PF05274.11 gi|530547871|ref|YP_008428403.1| - 0.089 12.6 0.3 0.21 11.4 0.3 1.6 1 0 0 1 1 1 0 Occlusion-derived virus envelope protein E25 GreA_GreB_N PF03449.15 gi|530547871|ref|YP_008428403.1| - 0.09 12.9 1.2 2.1 8.6 0.3 2.7 2 0 0 2 2 2 0 Transcription elongation factor, N-terminal AP_endonuc_2 PF01261.24 gi|530547872|ref|YP_008428404.1| - 6e-18 65.0 0.0 7.5e-18 64.7 0.0 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel Uricase PF01014.18 gi|530547872|ref|YP_008428404.1| - 0.013 15.8 0.0 0.03 14.6 0.0 1.6 2 0 0 2 2 2 0 Uricase CoA_binding_2 PF13380.6 gi|530547872|ref|YP_008428404.1| - 0.013 16.0 0.0 0.019 15.4 0.0 1.3 1 0 0 1 1 1 0 CoA binding domain UvdE PF03851.14 gi|530547872|ref|YP_008428404.1| - 0.025 13.8 0.0 0.036 13.3 0.0 1.2 1 0 0 1 1 1 0 UV-endonuclease UvdE MukF_C PF17193.4 gi|530547872|ref|YP_008428404.1| - 0.1 12.7 0.0 0.17 12.0 0.0 1.4 1 0 0 1 1 1 0 MukF C-terminal domain Hjc PF01870.18 gi|530547872|ref|YP_008428404.1| - 0.12 12.4 0.1 0.57 10.2 0.1 2.1 1 1 0 1 1 1 0 Archaeal holliday junction resolvase (hjc) Ribonucleas_3_2 PF11469.8 gi|530547873|ref|YP_008428405.1| - 2.8e-48 163.2 0.0 3.2e-48 163.1 0.0 1.0 1 0 0 1 1 1 1 Ribonuclease III RNA_pol_L_2 PF13656.6 gi|530547874|ref|YP_008428406.1| - 4.7e-20 71.1 0.1 6e-20 70.8 0.1 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain RNA_pol_L PF01193.24 gi|530547874|ref|YP_008428406.1| - 2.8e-10 39.5 0.0 4.3e-10 38.9 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Cadherin_pro PF08758.11 gi|530547874|ref|YP_008428406.1| - 0.0093 16.1 0.0 0.012 15.8 0.0 1.4 1 1 0 1 1 1 1 Cadherin prodomain like DUF2067 PF09840.9 gi|530547875|ref|YP_008428407.1| - 4.1e-48 163.4 6.1 4.7e-48 163.2 6.1 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2067) DUF2102 PF09875.9 gi|530547875|ref|YP_008428407.1| - 0.025 14.3 0.1 0.047 13.4 0.1 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2102) DUF2236 PF09995.9 gi|530547875|ref|YP_008428407.1| - 0.097 12.9 0.0 0.11 12.6 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2236) ECR1_N PF14382.6 gi|530547876|ref|YP_008428408.1| - 9.6e-10 38.1 0.0 2.3e-09 36.9 0.0 1.7 1 0 0 1 1 1 1 Exosome complex exonuclease RRP4 N-terminal region EXOSC1 PF10447.9 gi|530547876|ref|YP_008428408.1| - 1.2e-07 32.3 3.8 2.1e-05 25.1 0.1 2.9 2 1 1 3 3 3 2 Exosome component EXOSC1/CSL4 S1 PF00575.23 gi|530547876|ref|YP_008428408.1| - 4.1e-05 23.8 1.2 0.0013 19.0 1.2 2.4 1 1 0 1 1 1 1 S1 RNA binding domain Auto_anti-p27 PF06677.12 gi|530547876|ref|YP_008428408.1| - 0.0022 18.1 2.0 0.0037 17.4 2.0 1.3 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Prok-RING_1 PF14446.6 gi|530547876|ref|YP_008428408.1| - 0.0045 16.9 0.2 0.011 15.7 0.2 1.6 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 PCB_OB PF17092.5 gi|530547876|ref|YP_008428408.1| - 0.0058 17.4 0.3 0.023 15.5 0.0 1.9 2 0 0 2 2 2 1 Penicillin-binding protein OB-like domain DZR PF12773.7 gi|530547876|ref|YP_008428408.1| - 0.018 15.0 0.2 0.029 14.4 0.2 1.2 1 0 0 1 1 1 0 Double zinc ribbon DUF1610 PF07754.11 gi|530547876|ref|YP_008428408.1| - 0.042 13.8 1.7 0.09 12.8 1.7 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF1610) ADK_lid PF05191.14 gi|530547876|ref|YP_008428408.1| - 0.074 13.0 1.7 4.8 7.2 0.3 2.3 2 0 0 2 2 2 0 Adenylate kinase, active site lid TRAM PF01938.20 gi|530547876|ref|YP_008428408.1| - 0.12 12.4 0.3 5.7 7.0 0.1 2.7 2 0 0 2 2 2 0 TRAM domain zinc_ribbon_2 PF13240.6 gi|530547876|ref|YP_008428408.1| - 0.28 11.0 3.6 10 6.0 1.2 2.2 1 1 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|530547876|ref|YP_008428408.1| - 0.9 9.7 2.8 2.6 8.2 2.8 1.8 1 1 0 1 1 1 0 Zinc ribbon domain DDE_Tnp_IS66 PF03050.14 gi|530547878|ref|YP_008428410.1| - 0.0041 16.6 0.0 0.0043 16.6 0.0 1.1 1 0 0 1 1 1 1 Transposase IS66 family tRNA-Thr_ED PF08915.11 gi|530547879|ref|YP_008428411.1| - 1.3e-56 190.5 1.3 3.4e-56 189.1 1.3 1.8 1 0 0 1 1 1 1 Archaea-specific editing domain of threonyl-tRNA synthetase HGTP_anticodon PF03129.20 gi|530547879|ref|YP_008428411.1| - 6.4e-24 83.9 3.7 1.5e-23 82.7 1.9 2.5 2 0 0 2 2 2 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|530547879|ref|YP_008428411.1| - 4.9e-19 69.0 0.3 1e-18 67.9 0.3 1.6 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) TBPIP_N PF15517.6 gi|530547880|ref|YP_008428412.1| - 7.7e-37 125.3 0.3 1.2e-36 124.8 0.3 1.3 1 0 0 1 1 1 1 TBP-interacting protein N-terminus zf_UBZ PF18439.1 gi|530547880|ref|YP_008428412.1| - 0.00089 18.8 0.2 0.00089 18.8 0.2 1.8 2 0 0 2 2 2 1 Ubiquitin-Binding Zinc Finger zf_C2H2_13 PF18508.1 gi|530547880|ref|YP_008428412.1| - 0.0026 17.3 0.3 0.0061 16.1 0.3 1.6 1 1 0 1 1 1 1 Zinc finger domain Desulfoferrod_N PF06397.12 gi|530547880|ref|YP_008428412.1| - 0.08 12.6 0.3 0.14 11.8 0.3 1.3 1 0 0 1 1 1 0 Desulfoferrodoxin, N-terminal domain IF-2B PF01008.17 gi|530547881|ref|YP_008428413.1| - 4.9e-53 180.2 0.0 1.1e-52 179.0 0.0 1.6 1 1 0 1 1 1 1 Initiation factor 2 subunit family Regulator_TrmB PF11495.8 gi|530547881|ref|YP_008428413.1| - 0.03 13.5 0.0 0.083 12.1 0.0 1.6 1 1 1 2 2 2 0 Archaeal transcriptional regulator TrmB ANF_receptor PF01094.28 gi|530547881|ref|YP_008428413.1| - 0.16 11.0 0.1 4.4 6.3 0.0 2.0 1 1 1 2 2 2 0 Receptor family ligand binding region Asp_Glu_race PF01177.22 gi|530547882|ref|YP_008428414.1| - 2.7e-49 168.0 0.0 3.1e-49 167.8 0.0 1.0 1 0 0 1 1 1 1 Asp/Glu/Hydantoin racemase PTA_PTB PF01515.19 gi|530547882|ref|YP_008428414.1| - 0.085 12.2 0.2 0.1 11.9 0.2 1.2 1 0 0 1 1 1 0 Phosphate acetyl/butaryl transferase UPF0180 PF03698.13 gi|530547882|ref|YP_008428414.1| - 0.094 12.9 0.1 2 8.6 0.0 2.7 2 2 1 3 3 3 0 Uncharacterised protein family (UPF0180) OrfB_Zn_ribbon PF07282.11 gi|564287479|ref|YP_008428415.3| - 2.2e-12 46.7 0.0 7.1e-12 45.1 0.0 1.8 1 1 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|564287479|ref|YP_008428415.3| - 0.14 12.4 0.1 0.25 11.6 0.1 1.4 1 0 0 1 1 1 0 Probable transposase OrfB_IS605 PF01385.19 gi|530547884|ref|YP_008428416.1| - 3.7e-18 65.9 0.5 6.1e-18 65.2 0.0 1.6 2 0 0 2 2 2 1 Probable transposase ATPase PF06745.13 gi|530547885|ref|YP_008428417.1| - 1.6e-109 364.7 10.8 7.9e-66 221.7 1.4 2.2 2 0 0 2 2 2 2 KaiC AAA_25 PF13481.6 gi|530547885|ref|YP_008428417.1| - 2.8e-16 59.7 0.0 1e-08 35.0 0.0 2.3 2 0 0 2 2 2 2 AAA domain Rad51 PF08423.11 gi|530547885|ref|YP_008428417.1| - 5.3e-13 48.8 0.5 1.3e-09 37.8 0.1 2.6 1 1 0 2 2 2 2 Rad51 DnaB_C PF03796.15 gi|530547885|ref|YP_008428417.1| - 6e-12 45.4 0.7 4.5e-05 22.9 0.0 2.7 2 1 0 2 2 2 2 DnaB-like helicase C terminal domain NACHT PF05729.12 gi|530547885|ref|YP_008428417.1| - 3.8e-09 36.7 0.0 0.00036 20.5 0.0 2.7 2 1 0 2 2 2 2 NACHT domain AAA_24 PF13479.6 gi|530547885|ref|YP_008428417.1| - 2.3e-08 34.0 2.9 0.00029 20.6 0.1 3.1 2 2 0 2 2 2 2 AAA domain RecA PF00154.21 gi|530547885|ref|YP_008428417.1| - 3.2e-08 33.4 0.1 3.7e-06 26.6 0.0 2.5 2 1 0 2 2 2 1 recA bacterial DNA recombination protein IstB_IS21 PF01695.17 gi|530547885|ref|YP_008428417.1| - 4e-06 26.7 0.2 0.0023 17.7 0.0 2.7 3 0 0 3 3 3 1 IstB-like ATP binding protein ResIII PF04851.15 gi|530547885|ref|YP_008428417.1| - 6.6e-06 26.2 3.3 0.047 13.7 0.1 3.0 2 1 1 3 3 3 2 Type III restriction enzyme, res subunit AAA_16 PF13191.6 gi|530547885|ref|YP_008428417.1| - 2.6e-05 24.6 0.0 0.12 12.8 0.0 2.4 2 0 0 2 2 2 2 AAA ATPase domain T2SSE PF00437.20 gi|530547885|ref|YP_008428417.1| - 2.6e-05 23.4 0.0 0.0054 15.8 0.0 2.5 2 0 0 2 2 2 1 Type II/IV secretion system protein ABC_tran PF00005.27 gi|530547885|ref|YP_008428417.1| - 4.8e-05 23.9 2.3 0.55 10.8 0.6 3.5 3 1 0 3 3 3 2 ABC transporter AAA_22 PF13401.6 gi|530547885|ref|YP_008428417.1| - 7.3e-05 23.1 0.1 0.57 10.5 0.0 2.6 2 1 0 2 2 2 2 AAA domain AAA_7 PF12775.7 gi|530547885|ref|YP_008428417.1| - 8.4e-05 22.2 0.0 0.043 13.3 0.1 2.4 2 0 0 2 2 2 1 P-loop containing dynein motor region AAA PF00004.29 gi|530547885|ref|YP_008428417.1| - 9.7e-05 22.8 4.2 0.086 13.3 0.6 2.9 2 2 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 gi|530547885|ref|YP_008428417.1| - 0.00011 21.9 0.1 0.55 9.9 0.0 2.4 2 0 0 2 2 2 2 Sigma-54 interaction domain GvpD PF07088.11 gi|530547885|ref|YP_008428417.1| - 0.00016 20.4 5.0 0.016 13.8 1.0 3.3 1 1 1 2 2 2 1 GvpD gas vesicle protein AAA_14 PF13173.6 gi|530547885|ref|YP_008428417.1| - 0.00016 21.7 0.8 0.04 13.9 0.0 2.7 2 1 0 2 2 2 1 AAA domain Sigma54_activ_2 PF14532.6 gi|530547885|ref|YP_008428417.1| - 0.00042 20.4 0.5 3.5 7.7 0.2 3.3 2 1 0 2 2 2 1 Sigma-54 interaction domain RNA_helicase PF00910.22 gi|530547885|ref|YP_008428417.1| - 0.00044 20.6 0.0 0.25 11.8 0.0 3.1 3 0 0 3 3 3 1 RNA helicase AAA_18 PF13238.6 gi|530547885|ref|YP_008428417.1| - 0.0007 20.2 0.3 0.17 12.4 0.0 2.7 2 1 0 2 2 2 1 AAA domain AAA_33 PF13671.6 gi|530547885|ref|YP_008428417.1| - 0.00092 19.4 0.0 0.54 10.4 0.0 2.6 2 0 0 2 2 2 1 AAA domain TniB PF05621.11 gi|530547885|ref|YP_008428417.1| - 0.0011 18.4 1.2 0.012 15.0 0.2 2.7 2 2 0 2 2 2 1 Bacterial TniB protein TsaE PF02367.17 gi|530547885|ref|YP_008428417.1| - 0.0011 18.9 0.9 0.88 9.6 0.2 2.6 2 0 0 2 2 2 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE FtsK_SpoIIIE PF01580.18 gi|530547885|ref|YP_008428417.1| - 0.0011 18.3 0.1 0.57 9.5 0.0 2.6 3 0 0 3 3 2 1 FtsK/SpoIIIE family Elong_Iki1 PF10483.9 gi|530547885|ref|YP_008428417.1| - 0.0015 18.1 1.0 1.4 8.4 0.1 2.9 2 1 1 3 3 3 1 Elongator subunit Iki1 DEAD PF00270.29 gi|530547885|ref|YP_008428417.1| - 0.0018 18.1 1.8 0.13 12.0 0.3 3.0 2 2 0 2 2 2 1 DEAD/DEAH box helicase DUF2075 PF09848.9 gi|530547885|ref|YP_008428417.1| - 0.0042 16.4 0.1 0.47 9.6 0.0 2.3 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) AAA_5 PF07728.14 gi|530547885|ref|YP_008428417.1| - 0.0067 16.4 0.3 0.24 11.4 0.0 2.9 3 1 1 4 4 3 1 AAA domain (dynein-related subfamily) ATP-synt_ab PF00006.25 gi|530547885|ref|YP_008428417.1| - 0.009 15.7 0.1 3.4 7.3 0.0 2.3 2 0 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain Zeta_toxin PF06414.12 gi|530547885|ref|YP_008428417.1| - 0.011 15.0 0.9 0.51 9.6 0.1 2.7 2 1 1 3 3 3 0 Zeta toxin SRP54 PF00448.22 gi|530547885|ref|YP_008428417.1| - 0.011 15.3 0.2 0.19 11.3 0.1 2.6 2 1 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_30 PF13604.6 gi|530547885|ref|YP_008428417.1| - 0.012 15.3 0.0 0.86 9.3 0.0 2.4 2 0 0 2 2 2 0 AAA domain Roc PF08477.13 gi|530547885|ref|YP_008428417.1| - 0.019 15.2 0.0 11 6.3 0.0 2.5 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase NB-ARC PF00931.22 gi|530547885|ref|YP_008428417.1| - 0.039 13.1 2.1 0.98 8.5 0.2 2.9 2 1 0 2 2 2 0 NB-ARC domain Pox_A32 PF04665.12 gi|530547885|ref|YP_008428417.1| - 0.079 12.4 0.6 9.7 5.6 0.0 3.3 3 0 0 3 3 3 0 Poxvirus A32 protein Zot PF05707.12 gi|530547885|ref|YP_008428417.1| - 0.089 12.4 0.0 12 5.5 0.0 2.6 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) AAA_19 PF13245.6 gi|530547885|ref|YP_008428417.1| - 0.099 13.0 0.4 26 5.1 0.3 2.5 2 1 0 2 2 2 0 AAA domain CbiA PF01656.23 gi|530547885|ref|YP_008428417.1| - 0.21 11.7 4.0 1.1 9.4 0.7 2.8 2 2 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_29 PF13555.6 gi|530547885|ref|YP_008428417.1| - 0.27 11.0 4.5 3 7.7 0.6 2.8 3 0 0 3 3 2 0 P-loop containing region of AAA domain NitrOD5 PF11537.8 gi|530547886|ref|YP_008428418.1| - 5e-36 122.7 0.7 5.6e-36 122.6 0.7 1.0 1 0 0 1 1 1 1 Nitrosopumilus output domain 5 DFP PF04127.15 gi|530547888|ref|YP_008428420.1| - 5.9e-57 192.5 4.5 1.3e-55 188.1 0.9 2.2 2 0 0 2 2 2 2 DNA / pantothenate metabolism flavoprotein Flavoprotein PF02441.19 gi|530547888|ref|YP_008428420.1| - 3.5e-42 143.8 5.9 1.7e-41 141.6 2.6 2.3 2 0 0 2 2 2 1 Flavoprotein PTS_IIB PF02302.17 gi|530547888|ref|YP_008428420.1| - 0.0039 17.9 3.5 0.24 12.1 0.5 3.1 2 1 0 2 2 2 1 PTS system, Lactose/Cellobiose specific IIB subunit Radical_SAM PF04055.21 gi|530547888|ref|YP_008428420.1| - 0.011 16.2 1.4 0.5 10.7 0.0 3.4 1 1 2 3 3 3 0 Radical SAM superfamily GST_C PF00043.25 gi|530547888|ref|YP_008428420.1| - 0.018 15.3 0.1 12 6.2 0.0 3.0 2 0 0 2 2 2 0 Glutathione S-transferase, C-terminal domain Glyco_transf_4 PF13439.6 gi|530547888|ref|YP_008428420.1| - 0.029 14.4 0.1 4.5 7.2 0.0 3.0 2 2 0 2 2 2 0 Glycosyltransferase Family 4 Glyco_trans_4_2 PF13477.6 gi|530547888|ref|YP_008428420.1| - 0.054 13.5 2.4 4.5 7.3 0.1 3.4 3 2 1 4 4 4 0 Glycosyl transferase 4-like LpxI_N PF17930.1 gi|530547888|ref|YP_008428420.1| - 0.079 12.9 0.2 1.1 9.1 0.1 2.8 3 0 0 3 3 3 0 LpxI N-terminal domain Usp PF00582.26 gi|530547888|ref|YP_008428420.1| - 0.16 12.5 4.8 0.16 12.5 0.8 2.5 2 1 0 2 2 2 0 Universal stress protein family DUF835 PF05763.12 gi|530547889|ref|YP_008428421.1| - 1.6e-31 108.9 0.4 2.3e-31 108.3 0.4 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF835) DUF190 PF02641.15 gi|530547890|ref|YP_008428422.1| - 1e-38 131.5 0.4 5e-38 129.3 0.2 1.8 1 1 1 2 2 2 2 Uncharacterized ACR, COG1993 CRCB PF02537.15 gi|530547891|ref|YP_008428423.1| - 2.4e-24 85.4 7.5 3e-24 85.2 7.5 1.0 1 0 0 1 1 1 1 CrcB-like protein, Camphor Resistance (CrcB) Phage_holin_3_3 PF16083.5 gi|530547891|ref|YP_008428423.1| - 0.023 14.8 4.9 0.18 12.0 4.9 2.4 1 1 0 1 1 1 0 LydA holin phage, holin superfamily III Prenyltrans PF00432.21 gi|530547892|ref|YP_008428424.1| - 5.2e-07 29.3 0.0 0.39 10.5 0.0 5.5 6 0 0 6 6 6 2 Prenyltransferase and squalene oxidase repeat Ribophorin_II PF05817.14 gi|530547892|ref|YP_008428424.1| - 0.23 10.0 0.0 1.4 7.4 0.1 2.0 1 1 1 2 2 2 0 Oligosaccharyltransferase subunit Ribophorin II Peptidase_M54 PF07998.11 gi|530547893|ref|YP_008428425.1| - 5.1e-49 166.9 0.1 5.2e-48 163.6 0.1 1.9 1 1 0 1 1 1 1 Peptidase family M54 Peptidase_M10 PF00413.24 gi|530547893|ref|YP_008428425.1| - 0.00036 20.4 0.0 0.00042 20.2 0.0 1.3 1 0 0 1 1 1 1 Matrixin Metallopep PF12044.8 gi|530547893|ref|YP_008428425.1| - 0.0051 15.5 0.9 0.0082 14.8 0.9 1.2 1 0 0 1 1 1 1 Putative peptidase family Reprolysin_3 PF13582.6 gi|530547893|ref|YP_008428425.1| - 0.0076 16.8 0.2 0.024 15.1 0.1 1.9 2 0 0 2 2 2 1 Metallo-peptidase family M12B Reprolysin-like Reprolysin_5 PF13688.6 gi|530547893|ref|YP_008428425.1| - 0.0078 16.4 0.0 0.011 15.9 0.0 1.4 1 0 0 1 1 1 1 Metallo-peptidase family M12 Reprolysin_4 PF13583.6 gi|530547893|ref|YP_008428425.1| - 0.013 15.1 0.0 0.022 14.4 0.0 1.3 1 0 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like Peptidase_M66 PF10462.9 gi|530547893|ref|YP_008428425.1| - 0.038 12.9 0.1 0.055 12.4 0.1 1.2 1 0 0 1 1 1 0 Peptidase M66 Reprolysin_2 PF13574.6 gi|530547893|ref|YP_008428425.1| - 0.064 13.1 0.1 0.093 12.6 0.1 1.4 1 1 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like DUF4953 PF16313.5 gi|530547893|ref|YP_008428425.1| - 0.087 12.0 0.1 0.14 11.4 0.1 1.2 1 0 0 1 1 1 0 Met-zincin Glycos_transf_2 PF00535.26 gi|530547894|ref|YP_008428426.1| - 1.7e-38 132.1 0.0 2.1e-38 131.8 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|530547894|ref|YP_008428426.1| - 1.4e-13 51.2 0.0 1.9e-13 50.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|530547894|ref|YP_008428426.1| - 8.5e-08 32.0 0.0 1.3e-07 31.3 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|530547894|ref|YP_008428426.1| - 5e-05 23.7 0.0 8.9e-05 22.9 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 DUF374 PF04028.13 gi|530547894|ref|YP_008428426.1| - 0.0085 15.6 0.0 0.018 14.6 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF374) Fumerase PF05681.14 gi|530547895|ref|YP_008428427.1| - 5e-95 318.0 0.0 5.6e-95 317.8 0.0 1.0 1 0 0 1 1 1 1 Fumarate hydratase (Fumerase) Fumerase_C PF05683.12 gi|530547896|ref|YP_008428428.1| - 1.9e-40 138.4 0.0 2.1e-40 138.3 0.0 1.0 1 0 0 1 1 1 1 Fumarase C-terminus ThiS PF02597.20 gi|530547897|ref|YP_008428429.1| - 2.4e-09 37.7 0.0 2.7e-09 37.6 0.0 1.0 1 0 0 1 1 1 1 ThiS family Ub-Mut7C PF14451.6 gi|530547897|ref|YP_008428429.1| - 0.00016 21.4 0.1 0.00027 20.7 0.1 1.6 1 1 0 1 1 1 1 Mut7-C ubiquitin ThiS-like PF14453.6 gi|530547897|ref|YP_008428429.1| - 0.0066 16.5 0.0 0.0079 16.2 0.0 1.3 1 0 0 1 1 1 1 ThiS-like ubiquitin Spt5-NGN PF03439.13 gi|530547898|ref|YP_008428430.1| - 0.08 12.8 0.1 0.25 11.3 0.1 1.8 1 0 0 1 1 1 0 Early transcription elongation factor of RNA pol II, NGN section DUF4030 PF13222.6 gi|530547898|ref|YP_008428430.1| - 0.096 12.8 2.8 2.3 8.4 0.2 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF4030) AFOR_C PF01314.18 gi|530547899|ref|YP_008428431.1| - 1.2e-112 376.7 0.3 1.5e-112 376.4 0.3 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.15 gi|530547899|ref|YP_008428431.1| - 1.2e-76 257.0 1.1 1.6e-76 256.6 1.1 1.2 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain Radical_SAM PF04055.21 gi|530547900|ref|YP_008428432.1| - 8.6e-19 68.5 0.0 3.8e-18 66.4 0.0 2.0 1 1 1 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|530547900|ref|YP_008428432.1| - 1.4e-10 41.5 0.0 2.7e-10 40.7 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|530547900|ref|YP_008428432.1| - 1.3e-06 28.6 0.0 1.3e-06 28.6 0.0 1.7 2 0 0 2 2 2 1 4Fe-4S single cluster domain CBP_BcsF PF11120.8 gi|530547901|ref|YP_008428433.1| - 0.083 13.0 0.1 0.092 12.9 0.1 1.1 1 0 0 1 1 1 0 Cellulose biosynthesis protein BcsF ERGIC_N PF13850.6 gi|530547902|ref|YP_008428434.1| - 0.082 13.3 0.0 0.094 13.1 0.0 1.0 1 0 0 1 1 1 0 Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC) DUF104 PF01954.16 gi|530547903|ref|YP_008428435.1| - 0.015 15.7 0.2 0.024 15.1 0.2 1.3 1 0 0 1 1 1 0 Protein of unknown function DUF104 PK PF00224.21 gi|530547904|ref|YP_008428436.1| - 1.4e-119 399.0 7.7 2.3e-119 398.3 7.7 1.3 1 0 0 1 1 1 1 Pyruvate kinase, barrel domain PK_C PF02887.16 gi|530547904|ref|YP_008428436.1| - 3.7e-23 82.0 0.1 1.7e-21 76.6 0.0 2.9 3 1 0 3 3 3 1 Pyruvate kinase, alpha/beta domain HpcH_HpaI PF03328.14 gi|530547904|ref|YP_008428436.1| - 0.0019 17.4 0.1 0.006 15.7 0.1 1.8 1 1 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family IMPDH PF00478.25 gi|530547904|ref|YP_008428436.1| - 0.0022 17.0 0.2 0.0097 14.9 0.0 2.0 2 0 0 2 2 2 1 IMP dehydrogenase / GMP reductase domain DUF3006 PF11213.8 gi|530547904|ref|YP_008428436.1| - 0.056 13.7 0.6 2.6 8.3 0.1 3.3 2 1 1 3 3 3 0 Protein of unknown function (DUF3006) MoCF_biosynth PF00994.24 gi|530547905|ref|YP_008428437.1| - 2.8e-37 127.6 0.0 4.4e-37 126.9 0.0 1.3 1 0 0 1 1 1 1 Probable molybdopterin binding domain B12-binding PF02310.19 gi|530547905|ref|YP_008428437.1| - 0.055 13.5 0.0 0.097 12.7 0.0 1.5 1 0 0 1 1 1 0 B12 binding domain NIL PF09383.10 gi|530547905|ref|YP_008428437.1| - 0.17 11.8 0.1 1.1 9.2 0.0 2.2 1 1 1 2 2 2 0 NIL domain SHOCT PF09851.9 gi|530547906|ref|YP_008428438.1| - 0.021 14.5 1.5 0.067 12.9 0.1 2.5 3 1 0 3 3 3 0 Short C-terminal domain QueH PF02677.14 gi|530547906|ref|YP_008428438.1| - 0.13 12.3 0.0 0.32 11.1 0.0 1.6 2 0 0 2 2 2 0 Epoxyqueuosine reductase QueH Ribosomal_S3_C PF00189.20 gi|530547906|ref|YP_008428438.1| - 0.13 12.8 0.0 0.28 11.7 0.0 1.6 1 0 0 1 1 1 0 Ribosomal protein S3, C-terminal domain MFS_1 PF07690.16 gi|530547907|ref|YP_008428439.1| - 2.6e-53 181.2 43.3 1.7e-34 119.3 22.1 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|530547907|ref|YP_008428439.1| - 3.5e-21 75.5 26.8 3.5e-20 72.2 26.8 2.0 1 1 0 1 1 1 1 MFS_1 like family Sugar_tr PF00083.24 gi|530547907|ref|YP_008428439.1| - 2.4e-17 63.0 30.4 1.6e-10 40.5 7.7 2.3 2 0 0 2 2 2 2 Sugar (and other) transporter Nuc_H_symport PF03825.16 gi|530547907|ref|YP_008428439.1| - 1.9e-12 46.9 23.5 2.6e-12 46.4 23.5 1.1 1 0 0 1 1 1 1 Nucleoside H+ symporter MFS_3 PF05977.13 gi|530547907|ref|YP_008428439.1| - 4.8e-07 28.5 15.8 6.1e-07 28.2 15.8 1.1 1 0 0 1 1 1 1 Transmembrane secretion effector MFS_2 PF13347.6 gi|530547907|ref|YP_008428439.1| - 2.1e-06 26.6 24.4 3.1e-06 26.0 24.3 1.3 1 1 0 1 1 1 1 MFS/sugar transport protein FUSC-like PF12805.7 gi|530547907|ref|YP_008428439.1| - 1.1 8.3 4.6 2.3 7.2 4.6 1.5 1 0 0 1 1 1 0 FUSC-like inner membrane protein yccS Pam17 PF08566.10 gi|530547907|ref|YP_008428439.1| - 8.3 6.2 5.8 11 5.9 0.6 3.0 3 0 0 3 3 3 0 Mitochondrial import protein Pam17 UPF0020 PF01170.18 gi|530547908|ref|YP_008428440.1| - 3.3e-28 98.7 0.1 1.1e-26 93.7 0.0 2.7 2 1 0 2 2 2 1 Putative RNA methylase family UPF0020 THUMP PF02926.17 gi|530547908|ref|YP_008428440.1| - 1.5e-13 51.0 0.1 3.4e-13 49.9 0.1 1.6 1 0 0 1 1 1 1 THUMP domain Methyltransf_31 PF13847.6 gi|530547908|ref|YP_008428440.1| - 5.9e-10 39.1 0.0 9.1e-10 38.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|530547908|ref|YP_008428440.1| - 4.8e-08 33.6 0.0 1.1e-07 32.5 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|530547908|ref|YP_008428440.1| - 3.8e-07 29.9 0.0 6.4e-07 29.2 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_15 PF09445.10 gi|530547908|ref|YP_008428440.1| - 4.6e-07 29.6 0.0 7.7e-07 28.8 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase N6_Mtase PF02384.16 gi|530547908|ref|YP_008428440.1| - 1e-06 28.3 0.0 1.6e-06 27.7 0.0 1.2 1 0 0 1 1 1 1 N-6 DNA Methylase N6_N4_Mtase PF01555.18 gi|530547908|ref|YP_008428440.1| - 2.4e-05 24.2 0.0 0.00017 21.4 0.0 2.1 2 0 0 2 2 2 1 DNA methylase Methyltransf_11 PF08241.12 gi|530547908|ref|YP_008428440.1| - 0.00014 22.4 0.0 0.00031 21.3 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain AviRa PF11599.8 gi|530547908|ref|YP_008428440.1| - 0.0027 17.2 0.0 0.41 10.1 0.0 2.4 1 1 1 2 2 2 1 RRNA methyltransferase AviRa Methyltransf_23 PF13489.6 gi|530547908|ref|YP_008428440.1| - 0.011 15.6 0.0 0.018 14.9 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_4 PF02390.17 gi|530547908|ref|YP_008428440.1| - 0.015 14.7 0.0 0.027 14.0 0.0 1.4 1 0 0 1 1 1 0 Putative methyltransferase MTS PF05175.14 gi|530547908|ref|YP_008428440.1| - 0.048 13.2 0.0 0.097 12.2 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase small domain Ubie_methyltran PF01209.18 gi|530547908|ref|YP_008428440.1| - 0.066 12.5 0.0 0.11 11.8 0.0 1.5 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family Transp_cyt_pur PF02133.15 gi|530547909|ref|YP_008428441.1| - 1.2e-45 156.2 26.2 1.5e-45 155.8 26.2 1.1 1 0 0 1 1 1 1 Permease for cytosine/purines, uracil, thiamine, allantoin US30 PF17624.2 gi|530547909|ref|YP_008428441.1| - 0.22 10.5 1.6 0.21 10.6 0.2 1.6 2 0 0 2 2 2 0 Family of unknown function HK PF02110.15 gi|530547910|ref|YP_008428442.1| - 8e-86 287.4 0.4 9.9e-86 287.1 0.4 1.0 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family Carb_kinase PF01256.17 gi|530547910|ref|YP_008428442.1| - 3.4e-09 36.6 0.5 4.3e-09 36.2 0.5 1.1 1 0 0 1 1 1 1 Carbohydrate kinase Phos_pyr_kin PF08543.12 gi|530547910|ref|YP_008428442.1| - 7e-08 32.1 0.7 9.9e-08 31.7 0.7 1.2 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase PfkB PF00294.24 gi|530547910|ref|YP_008428442.1| - 0.024 13.9 0.1 0.033 13.5 0.1 1.2 1 0 0 1 1 1 0 pfkB family carbohydrate kinase DUF3392 PF11872.8 gi|530547910|ref|YP_008428442.1| - 0.08 13.2 0.0 0.14 12.4 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3392) TMP-TENI PF02581.17 gi|530547911|ref|YP_008428443.1| - 1.2e-63 213.7 0.5 1.5e-63 213.4 0.5 1.1 1 0 0 1 1 1 1 Thiamine monophosphate synthase NMO PF03060.15 gi|530547911|ref|YP_008428443.1| - 1.2e-07 31.4 0.8 1.7e-07 31.0 0.8 1.1 1 0 0 1 1 1 1 Nitronate monooxygenase His_biosynth PF00977.21 gi|530547911|ref|YP_008428443.1| - 0.00092 18.7 2.6 0.0043 16.5 0.7 2.1 1 1 1 2 2 2 1 Histidine biosynthesis protein QRPTase_C PF01729.19 gi|530547911|ref|YP_008428443.1| - 0.0014 18.4 0.3 0.0061 16.3 0.1 2.1 1 1 1 2 2 2 1 Quinolinate phosphoribosyl transferase, C-terminal domain NanE PF04131.14 gi|530547911|ref|YP_008428443.1| - 0.0029 16.8 0.9 0.0056 15.9 0.5 1.7 1 1 1 2 2 2 1 Putative N-acetylmannosamine-6-phosphate epimerase ThiG PF05690.14 gi|530547911|ref|YP_008428443.1| - 0.0029 16.9 0.9 0.0063 15.8 0.7 1.6 1 1 0 1 1 1 1 Thiazole biosynthesis protein ThiG IMPDH PF00478.25 gi|530547911|ref|YP_008428443.1| - 0.0035 16.4 1.2 0.0059 15.7 1.0 1.4 1 1 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain DUF561 PF04481.12 gi|530547911|ref|YP_008428443.1| - 0.011 14.9 2.5 0.024 13.8 1.2 2.1 2 1 0 2 2 2 0 Protein of unknown function (DUF561) BtpA PF03437.15 gi|530547911|ref|YP_008428443.1| - 0.013 14.9 1.1 0.025 14.0 1.0 1.5 1 1 1 2 2 2 0 BtpA family IGPS PF00218.21 gi|530547911|ref|YP_008428443.1| - 0.013 14.7 0.9 0.029 13.5 0.2 1.8 2 0 0 2 2 2 0 Indole-3-glycerol phosphate synthase FlpD PF02662.16 gi|530547911|ref|YP_008428443.1| - 0.053 13.5 1.3 0.2 11.7 0.1 2.4 3 0 0 3 3 3 0 Methyl-viologen-reducing hydrogenase, delta subunit Ribul_P_3_epim PF00834.19 gi|530547911|ref|YP_008428443.1| - 0.061 12.7 1.1 0.14 11.6 0.5 1.8 2 0 0 2 2 2 0 Ribulose-phosphate 3 epimerase family ThiW PF09512.10 gi|530547912|ref|YP_008428444.1| - 4.2e-43 147.0 13.3 4.7e-43 146.9 13.3 1.0 1 0 0 1 1 1 1 Thiamine-precursor transporter protein (ThiW) ECF_trnsprt PF12822.7 gi|530547912|ref|YP_008428444.1| - 2e-06 28.1 21.7 8.8e-06 25.9 21.8 1.9 1 1 0 1 1 1 1 ECF transporter, substrate-specific component 5TM-5TMR_LYT PF07694.12 gi|530547912|ref|YP_008428444.1| - 2.4e-05 23.9 11.8 3.4e-05 23.4 11.8 1.4 1 1 0 1 1 1 1 5TMR of 5TMR-LYT CbiM PF01891.16 gi|530547912|ref|YP_008428444.1| - 0.014 15.2 12.0 0.039 13.8 12.0 1.6 1 1 0 1 1 1 0 Cobalt uptake substrate-specific transmembrane region Phos_pyr_kin PF08543.12 gi|530547913|ref|YP_008428445.1| - 2e-93 312.3 0.9 2.4e-93 312.0 0.9 1.1 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase ThiP_synth PF10120.9 gi|530547913|ref|YP_008428445.1| - 7.7e-61 204.5 0.0 1.7e-60 203.4 0.0 1.6 1 0 0 1 1 1 1 Thiamine-phosphate synthase PfkB PF00294.24 gi|530547913|ref|YP_008428445.1| - 7.5e-13 48.4 0.8 1.3e-12 47.7 0.8 1.4 1 0 0 1 1 1 1 pfkB family carbohydrate kinase HK PF02110.15 gi|530547913|ref|YP_008428445.1| - 0.015 14.7 2.6 0.17 11.2 2.6 2.1 1 1 0 1 1 1 0 Hydroxyethylthiazole kinase family Carb_kinase PF01256.17 gi|530547913|ref|YP_008428445.1| - 0.36 10.3 2.9 0.7 9.3 2.7 1.5 1 1 0 1 1 1 0 Carbohydrate kinase DSHCT PF08148.12 gi|530547914|ref|YP_008428446.1| - 0.17 11.6 0.0 0.18 11.4 0.0 1.2 1 0 0 1 1 1 0 DSHCT (NUC185) domain Pyridoxal_deC PF00282.19 gi|530547915|ref|YP_008428447.1| - 2.3e-33 115.4 0.0 1.4e-32 112.9 0.0 1.8 1 1 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain Aminotran_5 PF00266.19 gi|530547915|ref|YP_008428447.1| - 9.4e-12 44.6 0.0 9.7e-09 34.6 0.0 2.1 2 0 0 2 2 2 2 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.17 gi|530547915|ref|YP_008428447.1| - 9.2e-08 31.8 0.0 1.8e-07 30.8 0.0 1.4 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.21 gi|530547915|ref|YP_008428447.1| - 0.00031 20.1 0.0 0.00055 19.3 0.0 1.4 1 1 0 1 1 1 1 Beta-eliminating lyase SepSecS PF05889.13 gi|530547915|ref|YP_008428447.1| - 0.00054 18.8 0.0 0.053 12.2 0.0 2.6 3 0 0 3 3 3 2 O-phosphoseryl-tRNA(Sec) selenium transferase, SepSecS Aminotran_1_2 PF00155.21 gi|530547915|ref|YP_008428447.1| - 0.0022 17.3 0.0 0.0043 16.3 0.0 1.5 2 0 0 2 2 2 1 Aminotransferase class I and II Na_H_Exchanger PF00999.21 gi|530547916|ref|YP_008428448.1| - 5.5e-54 183.4 47.1 7.1e-54 183.0 47.1 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family Ldr_toxin PF13940.6 gi|530547916|ref|YP_008428448.1| - 4 7.6 8.1 8.6 6.5 0.4 3.0 3 0 0 3 3 3 0 Toxin Ldr, type I toxin-antitoxin system DUF131 PF01998.17 gi|530547917|ref|YP_008428449.1| - 8.1e-15 54.2 9.0 8.1e-15 54.2 9.0 1.7 1 1 1 2 2 2 1 Protein of unknown function DUF131 SDF PF00375.18 gi|530547917|ref|YP_008428449.1| - 0.49 9.4 10.9 0.57 9.1 10.9 1.1 1 0 0 1 1 1 0 Sodium:dicarboxylate symporter family Fig1 PF12351.8 gi|530547917|ref|YP_008428449.1| - 2.2 8.1 8.3 7.5 6.4 8.4 1.7 1 1 0 1 1 1 0 Ca2+ regulator and membrane fusion protein Fig1 HAD_2 PF13419.6 gi|530547918|ref|YP_008428450.1| - 1.1e-25 90.7 0.1 1.7e-25 90.2 0.1 1.3 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|530547918|ref|YP_008428450.1| - 1.8e-14 54.5 0.0 4.1e-14 53.4 0.0 1.6 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|530547918|ref|YP_008428450.1| - 1.6e-11 44.1 0.0 4.4e-11 42.7 0.0 1.7 2 0 0 2 2 2 1 HAD-hyrolase-like HAD PF12710.7 gi|530547918|ref|YP_008428450.1| - 1.3e-08 35.4 0.1 2.2e-08 34.7 0.1 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase NIF PF03031.18 gi|530547918|ref|YP_008428450.1| - 7.3e-05 22.6 0.8 0.005 16.6 0.1 2.4 2 0 0 2 2 2 1 NLI interacting factor-like phosphatase Hydrolase_6 PF13344.6 gi|530547918|ref|YP_008428450.1| - 0.00013 22.1 0.1 0.0006 19.9 0.0 2.1 3 0 0 3 3 3 1 Haloacid dehalogenase-like hydrolase PGP_phosphatase PF09419.10 gi|530547918|ref|YP_008428450.1| - 0.00027 20.6 0.1 0.002 17.8 0.0 2.4 2 1 0 2 2 2 1 Mitochondrial PGP phosphatase NT5C PF06941.12 gi|530547918|ref|YP_008428450.1| - 0.00044 20.2 0.5 0.21 11.5 0.0 3.2 2 1 1 3 3 3 1 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) MCM6_C PF18263.1 gi|530547918|ref|YP_008428450.1| - 0.06 13.6 1.1 0.11 12.7 1.1 1.4 1 0 0 1 1 1 0 MCM6 C-terminal winged-helix domain DUF3985 PF13153.6 gi|530547919|ref|YP_008428451.1| - 4 7.5 9.7 0.55 10.3 2.9 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3985) DUF1926 PF09095.11 gi|530547920|ref|YP_008428452.1| - 7.7e-75 252.1 0.1 1.4e-74 251.2 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1926) Glyco_hydro_57 PF03065.15 gi|530547920|ref|YP_008428452.1| - 1.6e-62 211.6 3.4 5.4e-59 200.0 0.6 2.4 2 1 1 3 3 3 2 Glycosyl hydrolase family 57 DUF1925 PF09094.11 gi|530547920|ref|YP_008428452.1| - 1e-35 121.8 0.8 2.2e-35 120.8 0.8 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF1925) Glyco_hydro_38N PF01074.22 gi|530547920|ref|YP_008428452.1| - 1.7e-05 24.4 0.0 0.0037 16.7 0.0 2.3 2 0 0 2 2 2 2 Glycosyl hydrolases family 38 N-terminal domain CoA_binding_2 PF13380.6 gi|530547920|ref|YP_008428452.1| - 0.013 16.0 0.0 0.082 13.4 0.0 2.1 2 0 0 2 2 2 0 CoA binding domain ATP_bind_3 PF01171.20 gi|530547921|ref|YP_008428453.1| - 2.5e-12 46.9 0.0 4e-12 46.3 0.0 1.3 1 0 0 1 1 1 1 PP-loop family ThiI PF02568.14 gi|530547921|ref|YP_008428453.1| - 3.5e-08 33.3 0.0 7.7e-08 32.2 0.0 1.5 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) tRNA_Me_trans PF03054.16 gi|530547921|ref|YP_008428453.1| - 1.4e-07 30.7 0.1 6.1e-07 28.6 0.1 1.9 1 1 0 1 1 1 1 tRNA methyl transferase QueC PF06508.13 gi|530547921|ref|YP_008428453.1| - 3e-07 30.2 0.0 6.4e-06 25.8 0.0 2.3 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC PAPS_reduct PF01507.19 gi|530547921|ref|YP_008428453.1| - 3.2e-05 24.1 0.0 5.2e-05 23.3 0.0 1.3 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family NAD_synthase PF02540.17 gi|530547921|ref|YP_008428453.1| - 0.0023 17.1 0.0 0.0045 16.1 0.0 1.4 1 0 0 1 1 1 1 NAD synthase Transp_Tc5_C PF04236.15 gi|530547921|ref|YP_008428453.1| - 0.0076 16.6 0.7 0.0076 16.6 0.7 2.5 2 0 0 2 2 2 1 Tc5 transposase C-terminal domain Rhodanese PF00581.20 gi|530547921|ref|YP_008428453.1| - 0.011 16.2 0.0 0.023 15.2 0.0 1.5 1 0 0 1 1 1 0 Rhodanese-like domain C1_2 PF03107.16 gi|530547921|ref|YP_008428453.1| - 0.073 13.4 6.9 3 8.2 0.9 3.3 3 0 0 3 3 3 0 C1 domain Asn_synthase PF00733.21 gi|530547921|ref|YP_008428453.1| - 0.12 12.1 0.0 0.16 11.6 0.0 1.2 1 0 0 1 1 1 0 Asparagine synthase RecR PF02132.15 gi|530547921|ref|YP_008428453.1| - 0.26 10.9 6.9 0.21 11.2 0.6 3.0 3 0 0 3 3 3 0 RecR protein zf-C2H2_10 PF16588.5 gi|530547921|ref|YP_008428453.1| - 0.75 9.6 5.4 11 5.8 0.2 2.5 2 0 0 2 2 2 0 C2H2 zinc-finger Pyr_redox_2 PF07992.14 gi|530547922|ref|YP_008428454.1| - 1.9e-18 66.7 0.5 2.2e-06 27.1 0.0 3.1 3 0 0 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|530547922|ref|YP_008428454.1| - 6.6e-10 39.1 0.2 2.8e-05 23.9 0.1 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase GIDA PF01134.22 gi|530547922|ref|YP_008428454.1| - 5.6e-09 35.6 0.4 0.00031 19.9 0.0 2.4 2 0 0 2 2 2 2 Glucose inhibited division protein A HI0933_like PF03486.14 gi|530547922|ref|YP_008428454.1| - 7.5e-09 34.8 0.1 2e-05 23.5 0.0 2.2 2 0 0 2 2 2 2 HI0933-like protein Thi4 PF01946.17 gi|530547922|ref|YP_008428454.1| - 9.1e-08 31.6 0.0 2e-07 30.5 0.0 1.5 1 0 0 1 1 1 1 Thi4 family NAD_binding_8 PF13450.6 gi|530547922|ref|YP_008428454.1| - 1.7e-06 28.2 0.0 5e-05 23.5 0.0 3.0 3 0 0 3 3 3 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.24 gi|530547922|ref|YP_008428454.1| - 7.1e-06 25.4 0.7 3.5e-05 23.1 0.1 2.2 3 0 0 3 3 3 1 FAD binding domain FAD_binding_3 PF01494.19 gi|530547922|ref|YP_008428454.1| - 7.3e-05 22.2 0.0 0.0034 16.7 0.0 2.3 2 0 0 2 2 2 1 FAD binding domain Lycopene_cycl PF05834.12 gi|530547922|ref|YP_008428454.1| - 0.00077 18.6 0.1 0.0012 18.0 0.1 1.2 1 0 0 1 1 1 1 Lycopene cyclase protein Pyr_redox PF00070.27 gi|530547922|ref|YP_008428454.1| - 0.0019 18.7 0.5 0.89 10.2 0.1 2.6 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|530547922|ref|YP_008428454.1| - 0.0059 15.9 1.6 0.014 14.7 0.2 2.2 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.6 gi|530547922|ref|YP_008428454.1| - 0.0065 16.5 0.0 0.016 15.2 0.0 1.6 1 0 0 1 1 1 1 FAD-NAD(P)-binding FAD_oxidored PF12831.7 gi|530547922|ref|YP_008428454.1| - 0.012 15.0 0.2 0.32 10.3 0.1 2.1 2 0 0 2 2 2 0 FAD dependent oxidoreductase Glyoxalase PF00903.25 gi|530547922|ref|YP_008428454.1| - 0.086 13.0 0.0 0.34 11.1 0.0 1.9 1 1 0 1 1 1 0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AKAP95 PF04988.12 gi|530547922|ref|YP_008428454.1| - 0.15 12.3 0.0 0.24 11.6 0.0 1.3 1 0 0 1 1 1 0 A-kinase anchoring protein 95 (AKAP95) CBS PF00571.28 gi|530547923|ref|YP_008428455.1| - 6.9e-26 90.5 5.2 2.4e-13 50.3 1.5 2.2 2 0 0 2 2 2 2 CBS domain Acetyltransf_1 PF00583.25 gi|530547923|ref|YP_008428455.1| - 0.13 12.5 0.0 0.29 11.4 0.0 1.8 1 1 0 1 1 1 0 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|530547923|ref|YP_008428455.1| - 0.15 12.0 0.0 12 5.9 0.0 2.2 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain Na_H_Exchanger PF00999.21 gi|530547925|ref|YP_008428457.1| - 1.6e-55 188.5 31.1 1.8e-55 188.3 31.1 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family Na_H_Exchanger PF00999.21 gi|530547926|ref|YP_008428458.1| - 3.7e-70 236.6 41.8 5e-70 236.2 41.8 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family HTH_AsnC-type PF13404.6 gi|530547928|ref|YP_008428460.1| - 4.7e-16 58.3 0.2 7.5e-16 57.7 0.2 1.3 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|530547928|ref|YP_008428460.1| - 4.2e-15 55.0 0.2 7.3e-15 54.3 0.2 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding AsnC_trans_reg PF01037.21 gi|530547928|ref|YP_008428460.1| - 2.2e-13 49.9 0.0 3.9e-13 49.2 0.0 1.4 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_11 PF08279.12 gi|530547928|ref|YP_008428460.1| - 5.6e-08 32.6 0.2 9.9e-08 31.8 0.2 1.4 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.7 gi|530547928|ref|YP_008428460.1| - 4.4e-06 26.6 0.0 7.2e-06 26.0 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HxlR PF01638.17 gi|530547928|ref|YP_008428460.1| - 5.9e-06 26.0 0.1 9.9e-06 25.3 0.1 1.4 1 0 0 1 1 1 1 HxlR-like helix-turn-helix Sigma70_r4 PF04545.16 gi|530547928|ref|YP_008428460.1| - 0.00013 21.5 0.1 0.00023 20.6 0.1 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_Mga PF08280.11 gi|530547928|ref|YP_008428460.1| - 0.00016 21.6 0.1 0.00038 20.4 0.0 1.6 2 0 0 2 2 1 1 M protein trans-acting positive regulator (MGA) HTH domain MarR PF01047.22 gi|530547928|ref|YP_008428460.1| - 0.0002 21.2 0.0 0.00055 19.8 0.1 1.7 2 0 0 2 2 1 1 MarR family MarR_2 PF12802.7 gi|530547928|ref|YP_008428460.1| - 0.00021 21.1 0.0 0.0004 20.2 0.0 1.4 1 0 0 1 1 1 1 MarR family Sigma70_r4_2 PF08281.12 gi|530547928|ref|YP_008428460.1| - 0.00044 19.9 0.2 0.0022 17.6 0.2 2.0 1 1 0 1 1 1 1 Sigma-70, region 4 HTH_28 PF13518.6 gi|530547928|ref|YP_008428460.1| - 0.00051 20.1 0.0 0.00091 19.3 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|530547928|ref|YP_008428460.1| - 0.00075 19.3 0.0 0.0013 18.5 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_DeoR PF08220.12 gi|530547928|ref|YP_008428460.1| - 0.00092 18.9 0.1 0.0016 18.2 0.1 1.3 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_23 PF13384.6 gi|530547928|ref|YP_008428460.1| - 0.0012 18.6 0.0 0.0019 17.9 0.0 1.3 1 0 0 1 1 1 1 Homeodomain-like domain TrmB PF01978.19 gi|530547928|ref|YP_008428460.1| - 0.0013 18.5 0.1 0.0025 17.6 0.1 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 gi|530547928|ref|YP_008428460.1| - 0.0036 17.1 0.0 0.0059 16.5 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Rrf2 PF02082.20 gi|530547928|ref|YP_008428460.1| - 0.0041 17.4 0.1 0.013 15.9 0.0 1.8 2 0 0 2 2 1 1 Transcriptional regulator HTH_Crp_2 PF13545.6 gi|530547928|ref|YP_008428460.1| - 0.0053 16.7 0.1 0.011 15.7 0.1 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 gi|530547928|ref|YP_008428460.1| - 0.0054 16.1 0.1 0.0084 15.5 0.1 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 HTH_10 PF04967.12 gi|530547928|ref|YP_008428460.1| - 0.0071 16.1 0.0 0.017 14.9 0.0 1.6 1 0 0 1 1 1 1 HTH DNA binding domain NapD PF03927.13 gi|530547928|ref|YP_008428460.1| - 0.0089 16.1 0.0 0.018 15.1 0.0 1.4 1 0 0 1 1 1 1 NapD protein HTH_12 PF08461.10 gi|530547928|ref|YP_008428460.1| - 0.009 15.9 0.0 0.019 14.9 0.0 1.7 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain Mga PF05043.13 gi|530547928|ref|YP_008428460.1| - 0.0094 16.5 0.1 0.036 14.7 0.0 1.8 2 0 0 2 2 2 1 Mga helix-turn-helix domain LexA_DNA_bind PF01726.16 gi|530547928|ref|YP_008428460.1| - 0.0097 15.7 0.1 0.017 14.9 0.1 1.4 1 0 0 1 1 1 1 LexA DNA binding domain HTH_29 PF13551.6 gi|530547928|ref|YP_008428460.1| - 0.013 15.5 0.0 0.021 14.8 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn helix DUF2805 PF10985.8 gi|530547928|ref|YP_008428460.1| - 0.014 15.7 0.1 0.037 14.4 0.1 1.7 2 0 0 2 2 1 0 Protein of unknown function (DUF2805) HTH_27 PF13463.6 gi|530547928|ref|YP_008428460.1| - 0.018 15.5 0.1 0.028 14.9 0.1 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain FaeA PF04703.12 gi|530547928|ref|YP_008428460.1| - 0.026 14.9 0.1 0.045 14.1 0.1 1.3 1 0 0 1 1 1 0 FaeA-like protein HTH_36 PF13730.6 gi|530547928|ref|YP_008428460.1| - 0.029 14.3 0.0 0.068 13.1 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain GerE PF00196.19 gi|530547928|ref|YP_008428460.1| - 0.03 13.9 0.1 0.052 13.1 0.1 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family RepL PF05732.11 gi|530547928|ref|YP_008428460.1| - 0.038 13.4 0.4 0.05 13.0 0.1 1.5 2 0 0 2 2 1 0 Firmicute plasmid replication protein (RepL) DUF4423 PF14394.6 gi|530547928|ref|YP_008428460.1| - 0.049 13.4 0.1 0.11 12.2 0.0 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4423) TFIIE_alpha PF02002.17 gi|530547928|ref|YP_008428460.1| - 0.072 12.9 0.3 0.38 10.6 0.2 2.0 1 1 1 2 2 2 0 TFIIE alpha subunit HTH_1 PF00126.27 gi|530547928|ref|YP_008428460.1| - 0.075 13.0 0.0 0.13 12.2 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family B-block_TFIIIC PF04182.12 gi|530547928|ref|YP_008428460.1| - 0.077 13.2 0.1 0.81 9.9 0.1 2.1 1 1 0 1 1 1 0 B-block binding subunit of TFIIIC HTH_50 PF18024.1 gi|530547928|ref|YP_008428460.1| - 0.086 12.5 0.0 0.19 11.3 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_34 PF13601.6 gi|530547928|ref|YP_008428460.1| - 0.087 13.0 0.0 0.14 12.3 0.0 1.5 1 1 0 1 1 1 0 Winged helix DNA-binding domain Rio2_N PF09202.11 gi|530547928|ref|YP_008428460.1| - 0.094 12.9 0.0 0.23 11.7 0.0 1.6 1 1 0 1 1 1 0 Rio2, N-terminal DUF2774 PF11242.8 gi|530547928|ref|YP_008428460.1| - 0.095 12.9 0.0 0.2 11.9 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2774) RWP-RK PF02042.15 gi|530547928|ref|YP_008428460.1| - 0.11 12.4 0.0 0.2 11.6 0.0 1.5 1 0 0 1 1 1 0 RWP-RK domain tRNA_U5-meth_tr PF05958.11 gi|530547929|ref|YP_008428461.1| - 3.7e-24 85.4 0.1 2.4e-14 53.1 0.0 2.2 1 1 1 2 2 2 2 tRNA (Uracil-5-)-methyltransferase MTS PF05175.14 gi|530547929|ref|YP_008428461.1| - 9.2e-10 38.3 0.0 1.6e-09 37.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Met_10 PF02475.16 gi|530547929|ref|YP_008428461.1| - 9.1e-09 35.3 0.1 1.7e-08 34.5 0.1 1.4 1 0 0 1 1 1 1 Met-10+ like-protein PrmA PF06325.13 gi|530547929|ref|YP_008428461.1| - 3.6e-06 26.6 0.1 5.5e-06 26.0 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Cons_hypoth95 PF03602.15 gi|530547929|ref|YP_008428461.1| - 4.4e-06 26.5 0.0 1.6e-05 24.6 0.0 1.8 2 0 0 2 2 2 1 Conserved hypothetical protein 95 Methyltransf_31 PF13847.6 gi|530547929|ref|YP_008428461.1| - 3.4e-05 23.7 0.0 8.5e-05 22.4 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|530547929|ref|YP_008428461.1| - 5.8e-05 23.7 0.0 0.00018 22.1 0.0 1.9 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|530547929|ref|YP_008428461.1| - 0.00015 21.7 0.0 0.0004 20.3 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.7 gi|530547929|ref|YP_008428461.1| - 0.00018 21.5 0.0 0.00038 20.4 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.10 gi|530547929|ref|YP_008428461.1| - 0.00043 19.9 0.0 0.0011 18.6 0.0 1.7 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase TehB PF03848.14 gi|530547929|ref|YP_008428461.1| - 0.00056 19.4 0.0 0.00089 18.7 0.0 1.3 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_11 PF08241.12 gi|530547929|ref|YP_008428461.1| - 0.15 12.8 0.0 0.44 11.2 0.0 1.8 2 0 0 2 2 1 0 Methyltransferase domain HTH_20 PF12840.7 gi|530547930|ref|YP_008428462.1| - 0.00013 22.0 0.2 0.00017 21.6 0.2 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.19 gi|530547930|ref|YP_008428462.1| - 0.00019 21.3 0.1 0.00021 21.1 0.1 1.1 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.20 gi|530547930|ref|YP_008428462.1| - 0.00082 19.7 0.1 0.00088 19.6 0.1 1.1 1 0 0 1 1 1 1 Transcriptional regulator GntR PF00392.21 gi|530547930|ref|YP_008428462.1| - 0.0078 15.9 0.1 0.0097 15.5 0.1 1.2 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family Fe_dep_repress PF01325.19 gi|530547930|ref|YP_008428462.1| - 0.019 15.1 0.0 0.038 14.2 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_IclR PF09339.10 gi|530547930|ref|YP_008428462.1| - 0.03 14.1 0.2 0.041 13.7 0.2 1.1 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|530547930|ref|YP_008428462.1| - 0.032 14.1 0.4 0.051 13.5 0.4 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_CodY PF08222.11 gi|530547930|ref|YP_008428462.1| - 0.048 13.2 0.0 0.057 13.0 0.0 1.4 1 0 0 1 1 1 0 CodY helix-turn-helix domain MarR PF01047.22 gi|530547930|ref|YP_008428462.1| - 0.09 12.7 0.1 0.13 12.2 0.1 1.2 1 0 0 1 1 1 0 MarR family HxlR PF01638.17 gi|530547930|ref|YP_008428462.1| - 0.11 12.3 0.2 0.13 12.1 0.2 1.1 1 0 0 1 1 1 0 HxlR-like helix-turn-helix HTH_11 PF08279.12 gi|530547930|ref|YP_008428462.1| - 0.14 12.1 0.6 0.29 11.1 0.3 1.5 2 0 0 2 2 2 0 HTH domain Pribosyltran PF00156.27 gi|530547931|ref|YP_008428463.1| - 7.9e-21 74.2 0.7 1e-20 73.9 0.7 1.1 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|530547931|ref|YP_008428463.1| - 0.00089 18.8 0.0 0.0012 18.3 0.0 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase DUF2529 PF10740.9 gi|530547931|ref|YP_008428463.1| - 0.012 15.3 0.0 0.016 14.9 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF2529) OTCace_N PF02729.21 gi|530547932|ref|YP_008428464.1| - 4.7e-50 169.5 0.0 1.1e-49 168.2 0.0 1.6 2 0 0 2 2 2 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.24 gi|530547932|ref|YP_008428464.1| - 8.8e-30 103.9 0.0 1.3e-29 103.3 0.0 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain PyrI PF01948.18 gi|530547933|ref|YP_008428465.1| - 1.9e-33 114.6 3.2 3e-33 113.9 3.2 1.3 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, allosteric domain PyrI_C PF02748.15 gi|530547933|ref|YP_008428465.1| - 1.2e-19 69.9 4.1 2e-19 69.2 4.1 1.4 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, metal binding domain PriA_CRR PF18319.1 gi|530547933|ref|YP_008428465.1| - 0.017 15.1 0.4 0.031 14.3 0.4 1.4 1 0 0 1 1 1 0 PriA DNA helicase Cys-rich region (CRR) domain Amidohydro_1 PF01979.20 gi|530547934|ref|YP_008428466.1| - 1.4e-33 116.7 0.0 1.7e-33 116.4 0.0 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|530547934|ref|YP_008428466.1| - 5e-19 69.1 0.0 1.5e-09 37.8 0.0 2.3 2 0 0 2 2 2 2 Amidohydrolase family DHOase PF12890.7 gi|530547934|ref|YP_008428466.1| - 4.5e-11 42.9 0.0 8.4e-11 42.0 0.0 1.5 1 0 0 1 1 1 1 Dihydro-orotase-like DHODB_Fe-S_bind PF10418.9 gi|530547935|ref|YP_008428467.1| - 3.1e-13 49.3 3.3 5.1e-13 48.6 3.3 1.4 1 0 0 1 1 1 1 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B FAD_binding_6 PF00970.24 gi|530547935|ref|YP_008428467.1| - 0.00012 22.3 0.0 0.00024 21.4 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase FAD-binding domain Fer2 PF00111.27 gi|530547935|ref|YP_008428467.1| - 0.051 13.5 1.4 0.091 12.7 0.7 1.7 2 0 0 2 2 2 0 2Fe-2S iron-sulfur cluster binding domain FAD_binding_8 PF08022.12 gi|530547935|ref|YP_008428467.1| - 0.19 11.8 0.2 0.7 10.0 0.2 1.9 1 1 0 1 1 1 0 FAD-binding domain NAD_binding_1 PF00175.21 gi|530547935|ref|YP_008428467.1| - 0.32 11.7 1.0 23 5.7 0.3 2.4 1 1 0 2 2 2 0 Oxidoreductase NAD-binding domain DHO_dh PF01180.21 gi|530547936|ref|YP_008428468.1| - 3.3e-68 230.1 0.3 3.8e-68 229.9 0.3 1.0 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase DUF561 PF04481.12 gi|530547936|ref|YP_008428468.1| - 0.00045 19.5 0.6 0.017 14.3 0.1 2.3 2 0 0 2 2 2 1 Protein of unknown function (DUF561) NMO PF03060.15 gi|530547936|ref|YP_008428468.1| - 0.0013 18.2 6.1 0.0078 15.6 3.6 2.0 1 1 1 2 2 2 1 Nitronate monooxygenase DeoC PF01791.9 gi|530547936|ref|YP_008428468.1| - 0.011 15.3 0.4 0.062 12.9 0.3 1.9 1 1 1 2 2 2 0 DeoC/LacD family aldolase His_biosynth PF00977.21 gi|530547936|ref|YP_008428468.1| - 0.02 14.3 0.1 0.09 12.2 0.0 1.9 2 0 0 2 2 2 0 Histidine biosynthesis protein Dus PF01207.17 gi|530547936|ref|YP_008428468.1| - 0.03 13.4 1.0 0.26 10.3 1.0 2.0 1 1 0 1 1 1 0 Dihydrouridine synthase (Dus) FMN_dh PF01070.18 gi|530547936|ref|YP_008428468.1| - 0.033 13.2 6.9 1.3 7.9 5.3 2.8 2 1 0 2 2 2 0 FMN-dependent dehydrogenase IMPDH PF00478.25 gi|530547936|ref|YP_008428468.1| - 0.049 12.6 2.5 1 8.3 3.6 2.1 1 1 1 2 2 2 0 IMP dehydrogenase / GMP reductase domain Oxidored_FMN PF00724.20 gi|530547936|ref|YP_008428468.1| - 0.072 12.3 0.4 2.9 7.0 0.0 2.3 2 1 0 2 2 2 0 NADH:flavin oxidoreductase / NADH oxidase family TMP-TENI PF02581.17 gi|530547936|ref|YP_008428468.1| - 0.078 12.3 1.1 0.16 11.3 0.4 1.8 2 0 0 2 2 2 0 Thiamine monophosphate synthase OMPdecase PF00215.24 gi|530547937|ref|YP_008428469.1| - 4.7e-26 91.8 0.0 5.6e-26 91.5 0.0 1.1 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family Peptidase_S66C PF17676.1 gi|530547937|ref|YP_008428469.1| - 0.003 18.1 0.0 0.83 10.2 0.0 2.4 2 0 0 2 2 2 2 LD-carboxypeptidase C-terminal domain FeoB_Cyto PF17910.1 gi|530547937|ref|YP_008428469.1| - 0.077 13.5 0.5 1.2 9.8 0.0 2.6 3 0 0 3 3 3 0 FeoB cytosolic helical domain Hydrolase_3 PF08282.12 gi|530547938|ref|YP_008428470.1| - 2e-30 106.4 0.0 3.4e-19 69.6 0.0 2.2 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|530547938|ref|YP_008428470.1| - 1.8e-11 44.7 0.7 2.7e-07 31.1 0.0 3.0 2 1 1 3 3 3 2 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|530547938|ref|YP_008428470.1| - 0.00022 21.7 0.5 0.84 10.0 0.0 2.7 2 1 1 3 3 3 2 haloacid dehalogenase-like hydrolase S6PP PF05116.13 gi|530547938|ref|YP_008428470.1| - 0.00043 19.9 0.0 0.0081 15.7 0.0 2.1 2 0 0 2 2 2 1 Sucrose-6F-phosphate phosphohydrolase HAD_2 PF13419.6 gi|530547938|ref|YP_008428470.1| - 0.0027 17.8 0.0 0.0086 16.2 0.0 1.8 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 gi|530547938|ref|YP_008428470.1| - 0.02 15.0 0.0 0.083 13.0 0.0 2.0 2 0 0 2 2 2 0 Haloacid dehalogenase-like hydrolase TruD PF01142.18 gi|530547939|ref|YP_008428471.1| - 3.3e-135 451.1 0.1 3.9e-135 450.9 0.1 1.0 1 0 0 1 1 1 1 tRNA pseudouridine synthase D (TruD) PTH2 PF01981.16 gi|530547940|ref|YP_008428472.1| - 9.5e-45 151.7 0.1 1.1e-44 151.5 0.1 1.0 1 0 0 1 1 1 1 Peptidyl-tRNA hydrolase PTH2 TRAP_beta PF05753.14 gi|530547941|ref|YP_008428473.1| - 8.1e-06 25.3 1.9 0.00029 20.3 0.4 2.5 2 0 0 2 2 2 1 Translocon-associated protein beta (TRAPB) DUF4878 PF12870.7 gi|530547941|ref|YP_008428473.1| - 0.03 14.6 0.7 0.14 12.5 0.7 2.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4878) DUF11 PF01345.18 gi|530547941|ref|YP_008428473.1| - 0.034 14.4 0.6 0.26 11.6 0.1 2.7 3 0 0 3 3 3 0 Domain of unknown function DUF11 Rib PF08428.10 gi|530547941|ref|YP_008428473.1| - 0.048 13.7 0.1 8 6.5 0.1 2.7 2 0 0 2 2 2 0 Rib/alpha-like repeat FixG_C PF11614.8 gi|530547941|ref|YP_008428473.1| - 0.049 13.9 1.2 9.6 6.5 0.6 3.3 3 0 0 3 3 3 0 IG-like fold at C-terminal of FixG, putative oxidoreductase DUF4381 PF14316.6 gi|530547941|ref|YP_008428473.1| - 0.15 12.3 0.0 0.27 11.4 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4381) PrcB_C PF14343.6 gi|530547941|ref|YP_008428473.1| - 2.3 8.4 6.1 0.33 11.1 0.7 2.5 3 1 0 3 3 3 0 PrcB C-terminal tRNA-synt_2 PF00152.20 gi|530547942|ref|YP_008428474.1| - 1.4e-95 320.0 2.7 1.7e-95 319.7 2.7 1.0 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.25 gi|530547942|ref|YP_008428474.1| - 1.4e-13 50.6 0.4 2.8e-13 49.6 0.4 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain KH_5 PF13184.6 gi|530547942|ref|YP_008428474.1| - 0.12 12.4 0.0 0.32 11.1 0.0 1.7 1 0 0 1 1 1 0 NusA-like KH domain KH_5 PF13184.6 gi|530547943|ref|YP_008428475.1| - 9e-10 38.5 1.5 1.3e-09 38.0 0.3 1.9 2 0 0 2 2 2 1 NusA-like KH domain KH_2 PF07650.17 gi|530547943|ref|YP_008428475.1| - 7.6e-08 32.1 1.4 7.6e-08 32.1 1.4 1.7 2 0 0 2 2 2 1 KH domain KH_1 PF00013.29 gi|530547943|ref|YP_008428475.1| - 1.6e-05 24.6 0.2 3.3e-05 23.6 0.2 1.6 1 0 0 1 1 1 1 KH domain Ribosomal_S7e PF01251.18 gi|530547943|ref|YP_008428475.1| - 0.001 18.9 0.4 0.0039 17.0 0.1 2.0 2 0 0 2 2 2 1 Ribosomal protein S7e KH_4 PF13083.6 gi|530547943|ref|YP_008428475.1| - 0.022 14.6 1.1 0.047 13.6 0.4 2.0 2 0 0 2 2 2 0 KH domain HD PF01966.22 gi|530547944|ref|YP_008428476.1| - 7.5e-20 71.4 1.4 7.5e-20 71.4 1.4 2.0 2 0 0 2 2 2 1 HD domain HD_2 PF12917.7 gi|530547944|ref|YP_008428476.1| - 0.039 13.7 1.7 5.7 6.6 0.3 3.1 3 0 0 3 3 3 0 HD containing hydrolase-like enzyme DUF4392 PF14336.6 gi|530547945|ref|YP_008428477.1| - 2.1e-64 217.8 0.0 2.5e-62 211.0 0.0 2.0 1 1 0 1 1 1 1 Domain of unknown function (DUF4392) HAD_2 PF13419.6 gi|530547947|ref|YP_008428479.1| - 1.2e-32 113.5 0.0 1.6e-32 113.0 0.0 1.2 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|530547947|ref|YP_008428479.1| - 2.9e-19 70.2 0.0 8.4e-18 65.4 0.0 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|530547947|ref|YP_008428479.1| - 2.1e-10 40.5 0.0 3.8e-10 39.7 0.0 1.3 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.7 gi|530547947|ref|YP_008428479.1| - 4.1e-06 27.3 0.0 5.5e-06 26.9 0.0 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase PGP_phosphatase PF09419.10 gi|530547947|ref|YP_008428479.1| - 0.0038 16.9 0.0 0.0061 16.2 0.0 1.3 1 0 0 1 1 1 1 Mitochondrial PGP phosphatase Acid_phosphat_B PF03767.14 gi|530547947|ref|YP_008428479.1| - 0.027 14.1 0.1 0.14 11.7 0.1 1.9 2 1 0 2 2 2 0 HAD superfamily, subfamily IIIB (Acid phosphatase) OMPdecase PF00215.24 gi|530547949|ref|YP_008428481.1| - 3.6e-28 98.7 7.8 7.8e-28 97.6 6.7 2.0 2 0 0 2 2 2 1 Orotidine 5'-phosphate decarboxylase / HUMPS family SIS PF01380.22 gi|530547949|ref|YP_008428481.1| - 7.5e-22 77.6 0.1 1.8e-21 76.4 0.1 1.6 1 0 0 1 1 1 1 SIS domain SIS_2 PF13580.6 gi|530547949|ref|YP_008428481.1| - 5.8e-09 36.1 6.4 4.8e-08 33.1 0.2 3.2 2 1 1 3 3 3 1 SIS domain His_biosynth PF00977.21 gi|530547949|ref|YP_008428481.1| - 4.2e-06 26.4 1.1 3.1e-05 23.6 0.8 2.1 1 1 1 2 2 2 1 Histidine biosynthesis protein ThiG PF05690.14 gi|530547949|ref|YP_008428481.1| - 4.3e-06 26.2 1.4 9e-06 25.2 1.4 1.5 1 0 0 1 1 1 1 Thiazole biosynthesis protein ThiG TMP-TENI PF02581.17 gi|530547949|ref|YP_008428481.1| - 2.7e-05 23.6 5.8 0.00011 21.6 4.4 2.5 2 1 0 2 2 2 1 Thiamine monophosphate synthase DUF561 PF04481.12 gi|530547949|ref|YP_008428481.1| - 3.3e-05 23.2 0.8 0.00014 21.1 0.5 2.2 1 1 1 2 2 2 1 Protein of unknown function (DUF561) HMGL-like PF00682.19 gi|530547949|ref|YP_008428481.1| - 4.1e-05 23.3 3.4 0.0032 17.1 0.3 2.4 1 1 1 2 2 2 2 HMGL-like PEP_mutase PF13714.6 gi|530547949|ref|YP_008428481.1| - 0.00017 21.2 5.7 0.014 14.9 0.3 3.2 2 2 2 4 4 4 2 Phosphoenolpyruvate phosphomutase IGPS PF00218.21 gi|530547949|ref|YP_008428481.1| - 0.00025 20.3 1.3 0.00085 18.6 1.3 2.0 1 1 0 1 1 1 1 Indole-3-glycerol phosphate synthase NanE PF04131.14 gi|530547949|ref|YP_008428481.1| - 0.00068 18.9 2.6 0.0016 17.6 2.6 1.6 1 0 0 1 1 1 1 Putative N-acetylmannosamine-6-phosphate epimerase Ribul_P_3_epim PF00834.19 gi|530547949|ref|YP_008428481.1| - 0.0011 18.4 3.5 0.0025 17.3 3.5 1.7 1 0 0 1 1 1 1 Ribulose-phosphate 3 epimerase family ADH_zinc_N PF00107.26 gi|530547949|ref|YP_008428481.1| - 0.0013 18.7 1.1 0.0013 18.7 1.1 3.1 1 1 4 5 5 5 2 Zinc-binding dehydrogenase MutL PF13941.6 gi|530547949|ref|YP_008428481.1| - 0.0024 16.6 5.8 1.1 7.8 1.0 3.1 2 1 1 3 3 3 2 MutL protein 4HFCP_synth PF04476.13 gi|530547949|ref|YP_008428481.1| - 0.01 15.6 0.2 0.045 13.5 0.2 2.2 1 1 0 1 1 1 1 4-HFC-P synthase QRPTase_C PF01729.19 gi|530547949|ref|YP_008428481.1| - 0.025 14.3 4.2 0.15 11.8 2.0 2.4 1 1 1 2 2 2 0 Quinolinate phosphoribosyl transferase, C-terminal domain adh_short PF00106.25 gi|530547949|ref|YP_008428481.1| - 0.44 10.0 4.8 8.7 5.8 0.2 3.6 2 2 2 4 4 4 0 short chain dehydrogenase Dus PF01207.17 gi|530547949|ref|YP_008428481.1| - 1.7 7.7 5.1 1.8 7.6 1.6 2.4 2 1 0 2 2 2 0 Dihydrouridine synthase (Dus) Arginase PF00491.21 gi|530547950|ref|YP_008428482.1| - 3.2e-16 59.7 0.0 6.7e-16 58.6 0.0 1.5 1 1 0 1 1 1 1 Arginase family Auto_anti-p27 PF06677.12 gi|530547951|ref|YP_008428483.1| - 7e-14 51.7 0.4 1e-13 51.2 0.4 1.3 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-ribbon_3 PF13248.6 gi|530547951|ref|YP_008428483.1| - 0.00091 18.6 1.4 0.14 11.6 0.1 2.2 2 0 0 2 2 2 2 zinc-ribbon domain DNA_ligase_ZBD PF03119.16 gi|530547951|ref|YP_008428483.1| - 0.0048 16.9 1.9 0.051 13.6 0.2 2.3 2 0 0 2 2 2 1 NAD-dependent DNA ligase C4 zinc finger domain DZR PF12773.7 gi|530547951|ref|YP_008428483.1| - 0.0074 16.3 0.6 0.011 15.7 0.6 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-LITAF-like PF10601.9 gi|530547951|ref|YP_008428483.1| - 0.02 15.2 1.2 0.45 10.8 0.0 2.1 1 1 1 2 2 2 0 LITAF-like zinc ribbon domain zinc-ribbons_6 PF07191.12 gi|530547951|ref|YP_008428483.1| - 0.033 14.1 0.4 0.055 13.5 0.4 1.3 1 0 0 1 1 1 0 zinc-ribbons zinc_ribbon_2 PF13240.6 gi|530547951|ref|YP_008428483.1| - 0.041 13.6 4.2 0.16 11.8 4.2 1.9 1 1 0 1 1 1 0 zinc-ribbon domain TackOD1 PF18551.1 gi|530547951|ref|YP_008428483.1| - 0.055 13.1 0.1 0.078 12.6 0.1 1.2 1 0 0 1 1 1 0 Thaumarchaeal output domain 1 Prok-RING_1 PF14446.6 gi|530547951|ref|YP_008428483.1| - 0.07 13.1 0.5 0.1 12.5 0.5 1.3 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 Nudix_N_2 PF14803.6 gi|530547951|ref|YP_008428483.1| - 0.12 12.4 1.6 0.63 10.0 0.2 2.2 2 0 0 2 2 2 0 Nudix N-terminal zf-NADH-PPase PF09297.11 gi|530547951|ref|YP_008428483.1| - 0.17 11.6 4.8 0.87 9.3 4.8 1.9 1 1 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain TF_Zn_Ribbon PF08271.12 gi|530547951|ref|YP_008428483.1| - 0.18 11.4 2.9 2 8.0 3.1 2.1 1 1 1 2 2 2 0 TFIIB zinc-binding NOB1_Zn_bind PF08772.11 gi|530547951|ref|YP_008428483.1| - 0.19 11.9 2.1 3.4 7.9 2.1 2.2 1 1 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like RecR PF02132.15 gi|530547951|ref|YP_008428483.1| - 0.23 11.1 4.6 0.63 9.6 3.1 2.4 2 1 0 2 2 2 0 RecR protein Zn_ribbon_recom PF13408.6 gi|530547951|ref|YP_008428483.1| - 0.23 12.0 1.3 9.6 6.8 0.1 2.4 1 1 1 2 2 2 0 Recombinase zinc beta ribbon domain Zn-ribbon_8 PF09723.10 gi|530547951|ref|YP_008428483.1| - 0.67 10.1 4.0 1.9 8.7 0.4 2.3 1 1 1 2 2 2 0 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|530547951|ref|YP_008428483.1| - 3 7.9 6.0 9.5 6.3 0.6 2.2 1 1 1 2 2 2 0 Transposase zinc-ribbon domain HTH_IclR PF09339.10 gi|530547952|ref|YP_008428484.1| - 1.4e-06 27.9 0.7 1.9e-06 27.6 0.7 1.1 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|530547952|ref|YP_008428484.1| - 1.9e-05 24.1 0.9 3e-05 23.5 0.9 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding FaeA PF04703.12 gi|530547952|ref|YP_008428484.1| - 0.00012 22.4 0.0 0.00013 22.3 0.0 1.1 1 0 0 1 1 1 1 FaeA-like protein TrmB PF01978.19 gi|530547952|ref|YP_008428484.1| - 0.0027 17.5 0.1 0.0031 17.4 0.1 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Sigma70_r3 PF04539.16 gi|530547952|ref|YP_008428484.1| - 0.012 15.7 0.2 0.017 15.2 0.2 1.3 1 0 0 1 1 1 0 Sigma-70 region 3 HTH_40 PF14493.6 gi|530547952|ref|YP_008428484.1| - 0.021 15.2 0.2 0.022 15.2 0.2 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain TFIIE_alpha PF02002.17 gi|530547952|ref|YP_008428484.1| - 0.022 14.6 0.8 0.031 14.1 0.7 1.4 1 1 0 1 1 1 0 TFIIE alpha subunit HTH_Crp_2 PF13545.6 gi|530547952|ref|YP_008428484.1| - 0.049 13.6 0.2 0.058 13.4 0.2 1.2 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Rrf2 PF02082.20 gi|530547952|ref|YP_008428484.1| - 0.058 13.7 0.0 0.067 13.6 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator MarR_2 PF12802.7 gi|530547952|ref|YP_008428484.1| - 0.076 12.9 0.1 0.089 12.7 0.1 1.1 1 0 0 1 1 1 0 MarR family MarR PF01047.22 gi|530547952|ref|YP_008428484.1| - 0.08 12.9 0.5 0.1 12.6 0.5 1.2 1 0 0 1 1 1 0 MarR family HTH_5 PF01022.20 gi|530547952|ref|YP_008428484.1| - 0.099 12.5 0.4 0.21 11.5 0.4 1.6 1 1 0 1 1 1 0 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|530547953|ref|YP_008428485.1| - 2.6e-18 65.7 0.0 5.1e-18 64.7 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Regulator_TrmB PF11495.8 gi|530547953|ref|YP_008428485.1| - 4.8e-09 35.7 0.6 6.4e-09 35.3 0.6 1.2 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB PLDc_2 PF13091.6 gi|530547953|ref|YP_008428485.1| - 0.00066 19.6 0.9 0.0042 17.0 0.9 2.2 1 1 0 1 1 1 1 PLD-like domain FA_desaturase_2 PF03405.14 gi|530547953|ref|YP_008428485.1| - 0.027 13.3 0.0 0.047 12.5 0.0 1.3 1 0 0 1 1 1 0 Fatty acid desaturase RraB PF06877.11 gi|530547953|ref|YP_008428485.1| - 0.067 13.9 0.1 0.92 10.3 0.1 2.4 1 1 0 1 1 1 0 Regulator of ribonuclease activity B Toprim PF01751.22 gi|530547954|ref|YP_008428486.1| - 8e-06 26.0 0.2 1.9e-05 24.8 0.1 1.7 1 1 0 1 1 1 1 Toprim domain Toprim_4 PF13662.6 gi|530547954|ref|YP_008428486.1| - 0.00016 22.1 0.1 0.00033 21.1 0.1 1.6 1 1 0 1 1 1 1 Toprim domain Toprim_2 PF13155.6 gi|530547954|ref|YP_008428486.1| - 0.0015 18.9 0.0 0.0021 18.4 0.0 1.3 1 0 0 1 1 1 1 Toprim-like Toprim_3 PF13362.6 gi|530547954|ref|YP_008428486.1| - 0.025 14.9 0.0 0.03 14.7 0.0 1.3 1 0 0 1 1 1 0 Toprim domain Cas_APE2256 PF09651.10 gi|530547954|ref|YP_008428486.1| - 0.071 13.0 0.0 0.12 12.3 0.0 1.3 1 0 0 1 1 1 0 CRISPR-associated protein (Cas_APE2256) Toprim_4 PF13662.6 gi|530547955|ref|YP_008428487.1| - 2.5e-13 50.3 0.7 9.7e-13 48.4 0.4 2.1 2 0 0 2 2 2 1 Toprim domain Toprim_2 PF13155.6 gi|530547955|ref|YP_008428487.1| - 1.8e-06 28.3 0.0 5.5e-06 26.7 0.0 1.9 2 0 0 2 2 2 1 Toprim-like Toprim PF01751.22 gi|530547955|ref|YP_008428487.1| - 0.0007 19.8 0.3 0.0007 19.8 0.3 2.6 2 2 1 3 3 3 1 Toprim domain OxoGdeHyase_C PF16870.5 gi|530547955|ref|YP_008428487.1| - 0.064 12.9 0.2 0.2 11.3 0.2 1.9 1 1 0 1 1 1 0 2-oxoglutarate dehydrogenase C-terminal DUF2704 PF10866.8 gi|530547955|ref|YP_008428487.1| - 0.098 12.5 0.3 0.19 11.6 0.3 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2704) GatB_Yqey PF02637.18 gi|530547955|ref|YP_008428487.1| - 2.2 8.1 12.8 0.026 14.4 2.1 2.8 3 0 0 3 3 3 0 GatB domain Ribosomal_L24e PF01246.20 gi|530547956|ref|YP_008428488.1| - 1.3e-24 86.2 4.3 1.4e-24 86.1 4.3 1.0 1 0 0 1 1 1 1 Ribosomal protein L24e zf-FCS PF06467.14 gi|530547956|ref|YP_008428488.1| - 5e-05 23.1 2.6 7.9e-05 22.5 2.6 1.2 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif YHS PF04945.13 gi|530547956|ref|YP_008428488.1| - 0.00011 22.2 3.8 0.00017 21.6 3.8 1.2 1 0 0 1 1 1 1 YHS domain Arc_trans_TRASH PF08394.10 gi|530547956|ref|YP_008428488.1| - 0.00029 21.1 3.0 0.00059 20.1 3.0 1.5 1 1 0 1 1 1 1 Archaeal TRASH domain DUF3268 PF11672.8 gi|530547956|ref|YP_008428488.1| - 0.00093 19.5 0.4 0.00096 19.5 0.4 1.1 1 0 0 1 1 1 1 zinc-finger-containing domain zf-ribbon_3 PF13248.6 gi|530547956|ref|YP_008428488.1| - 0.034 13.5 0.1 0.066 12.6 0.1 1.5 1 0 0 1 1 1 0 zinc-ribbon domain zf-C2HC_2 PF13913.6 gi|530547956|ref|YP_008428488.1| - 0.7 9.9 0.3 0.7 9.9 0.3 2.5 3 0 0 3 3 3 0 zinc-finger of a C2HC-type VATC PF18716.1 gi|530547956|ref|YP_008428488.1| - 0.94 9.4 7.1 3.6 7.5 7.1 1.9 1 1 0 1 1 1 0 Vms1-associating treble clef domain Ribosomal_S28e PF01200.18 gi|530547957|ref|YP_008428489.1| - 8.6e-30 102.5 5.5 9.4e-30 102.4 5.5 1.0 1 0 0 1 1 1 1 Ribosomal protein S28e Ribosomal_L7Ae PF01248.26 gi|530547958|ref|YP_008428490.1| - 2.5e-32 110.5 0.2 3.1e-32 110.2 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family PELOTA_1 PF15608.6 gi|530547958|ref|YP_008428490.1| - 9.5e-05 22.2 0.1 0.00014 21.7 0.1 1.3 1 0 0 1 1 1 1 PELOTA RNA binding domain eRF1_3 PF03465.15 gi|530547958|ref|YP_008428490.1| - 0.017 15.6 0.0 0.02 15.4 0.0 1.3 1 0 0 1 1 1 0 eRF1 domain 3 DUF1269 PF06897.12 gi|530547958|ref|YP_008428490.1| - 0.11 12.7 0.1 1.1 9.6 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1269) OST_P2 PF18235.1 gi|530547959|ref|YP_008428491.1| - 9e-59 197.2 0.1 2.7e-58 195.6 0.1 1.9 2 0 0 2 2 2 1 Oligosaccharyltransferase Peripheral 2 domain OST_IS PF18246.1 gi|530547959|ref|YP_008428491.1| - 5.5e-31 106.7 1.1 1.3e-30 105.5 1.1 1.7 1 0 0 1 1 1 1 Oligosaccharyltransferase Insert domain PMT_2 PF13231.6 gi|530547959|ref|YP_008428491.1| - 1.9e-06 28.2 13.6 1.9e-06 28.2 13.6 3.6 2 1 0 3 3 3 1 Dolichyl-phosphate-mannose-protein mannosyltransferase SIS PF01380.22 gi|530547960|ref|YP_008428492.1| - 1.8e-58 196.1 2.0 8e-34 116.3 1.8 2.3 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.6 gi|530547960|ref|YP_008428492.1| - 2.1e-22 79.7 0.0 4.3e-22 78.8 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.6 gi|530547960|ref|YP_008428492.1| - 9.9e-21 73.9 0.0 2.2e-20 72.8 0.0 1.6 1 0 0 1 1 1 1 Glutamine amidotransferase domain bact-PGI_C PF10432.9 gi|530547960|ref|YP_008428492.1| - 0.0041 17.2 0.4 2.4 8.2 0.0 3.0 2 2 0 2 2 2 2 Bacterial phospho-glucose isomerase C-terminal SIS domain SIS_2 PF13580.6 gi|530547960|ref|YP_008428492.1| - 0.012 15.7 0.6 0.095 12.7 0.2 2.4 1 1 1 2 2 2 0 SIS domain SCF PF02404.15 gi|530547961|ref|YP_008428493.1| - 0.075 12.4 0.3 0.073 12.4 0.3 1.0 1 0 0 1 1 1 0 Stem cell factor Methyltransf_15 PF09445.10 gi|530547962|ref|YP_008428494.1| - 4.6e-13 49.1 0.0 7.4e-13 48.4 0.0 1.4 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_25 PF13649.6 gi|530547962|ref|YP_008428494.1| - 1.3e-06 29.0 0.0 3.5e-06 27.6 0.0 1.7 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_18 PF12847.7 gi|530547962|ref|YP_008428494.1| - 2.3e-06 27.6 0.1 4.4e-06 26.7 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|530547962|ref|YP_008428494.1| - 4.2e-06 26.6 0.0 7.6e-06 25.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|530547962|ref|YP_008428494.1| - 4.7e-05 22.9 0.1 8.2e-05 22.1 0.1 1.3 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) UPF0020 PF01170.18 gi|530547962|ref|YP_008428494.1| - 0.0013 18.4 0.0 0.0028 17.4 0.0 1.5 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 CmcI PF04989.12 gi|530547962|ref|YP_008428494.1| - 0.0013 18.4 0.0 0.0022 17.7 0.0 1.3 1 0 0 1 1 1 1 Cephalosporin hydroxylase Methyltransf_11 PF08241.12 gi|530547962|ref|YP_008428494.1| - 0.0015 19.2 0.0 0.0032 18.1 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|530547962|ref|YP_008428494.1| - 0.0024 17.4 0.0 0.0053 16.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase small domain Met_10 PF02475.16 gi|530547962|ref|YP_008428494.1| - 0.01 15.6 0.1 0.019 14.7 0.0 1.5 2 0 0 2 2 2 0 Met-10+ like-protein Thump_like PF18096.1 gi|530547962|ref|YP_008428494.1| - 0.015 15.3 0.4 0.036 14.0 0.4 1.7 1 0 0 1 1 1 0 THUMP domain-like AdoMet_MTase PF07757.13 gi|530547962|ref|YP_008428494.1| - 0.023 15.0 0.0 0.047 14.0 0.0 1.5 1 0 0 1 1 1 0 Predicted AdoMet-dependent methyltransferase Methyltransf_3 PF01596.17 gi|530547962|ref|YP_008428494.1| - 0.062 12.5 0.1 0.11 11.7 0.1 1.3 1 0 0 1 1 1 0 O-methyltransferase Ubie_methyltran PF01209.18 gi|530547962|ref|YP_008428494.1| - 0.062 12.6 0.0 0.1 11.9 0.0 1.3 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.6 gi|530547962|ref|YP_008428494.1| - 0.076 12.8 0.0 0.12 12.2 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Polyoma_coat2 PF00761.20 gi|530547962|ref|YP_008428494.1| - 0.15 11.8 0.0 0.22 11.2 0.0 1.2 1 0 0 1 1 1 0 Polyomavirus coat protein PMT_2 PF13231.6 gi|530547963|ref|YP_008428495.1| - 9.1e-05 22.7 8.7 9.1e-05 22.7 8.7 2.2 2 0 0 2 2 2 1 Dolichyl-phosphate-mannose-protein mannosyltransferase PMT PF02366.18 gi|530547963|ref|YP_008428495.1| - 0.00021 21.0 10.1 0.00021 21.0 10.1 3.2 2 1 0 2 2 2 1 Dolichyl-phosphate-mannose-protein mannosyltransferase GT87 PF09594.10 gi|530547963|ref|YP_008428495.1| - 0.012 15.3 6.0 0.012 15.3 6.0 2.5 3 0 0 3 3 3 0 Glycosyltransferase family 87 RNase_HII PF01351.18 gi|530547964|ref|YP_008428496.1| - 4.3e-52 176.8 0.0 5.2e-52 176.6 0.0 1.1 1 0 0 1 1 1 1 Ribonuclease HII SapB_1 PF05184.15 gi|530547964|ref|YP_008428496.1| - 0.14 12.2 0.3 0.14 12.2 0.3 1.9 3 0 0 3 3 3 0 Saposin-like type B, region 1 ABC-3 PF00950.17 gi|530547965|ref|YP_008428497.1| - 8.8e-27 94.2 35.0 1.2e-26 93.8 35.0 1.0 1 0 0 1 1 1 1 ABC 3 transport family FecCD PF01032.18 gi|530547965|ref|YP_008428497.1| - 0.00052 19.1 34.8 0.00052 19.1 34.8 1.5 1 1 1 2 2 2 1 FecCD transport family ABC_tran PF00005.27 gi|530547966|ref|YP_008428498.1| - 2.8e-29 102.4 0.0 3.8e-29 101.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|530547966|ref|YP_008428498.1| - 4e-13 49.8 0.5 5.9e-06 26.3 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|530547966|ref|YP_008428498.1| - 2.8e-07 30.2 0.0 3.1e-06 26.8 0.0 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|530547966|ref|YP_008428498.1| - 7e-06 26.0 0.0 0.00043 20.1 0.0 2.1 1 1 0 2 2 2 1 AAA ATPase domain AAA_23 PF13476.6 gi|530547966|ref|YP_008428498.1| - 0.0002 21.9 0.0 0.00035 21.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|530547966|ref|YP_008428498.1| - 0.0012 19.2 0.1 0.0018 18.7 0.1 1.4 1 1 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|530547966|ref|YP_008428498.1| - 0.0013 18.6 0.0 0.0027 17.6 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase DLIC PF05783.11 gi|530547966|ref|YP_008428498.1| - 0.002 17.0 0.0 0.0031 16.4 0.0 1.2 1 0 0 1 1 1 1 Dynein light intermediate chain (DLIC) AAA_29 PF13555.6 gi|530547966|ref|YP_008428498.1| - 0.0026 17.4 0.0 0.0052 16.5 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA PF00004.29 gi|530547966|ref|YP_008428498.1| - 0.0057 17.1 0.4 0.046 14.1 0.4 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|530547966|ref|YP_008428498.1| - 0.0081 16.4 0.1 0.046 14.0 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|530547966|ref|YP_008428498.1| - 0.019 14.7 0.0 0.034 13.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|530547966|ref|YP_008428498.1| - 0.02 14.8 0.0 0.038 13.9 0.0 1.5 1 0 0 1 1 1 0 NACHT domain SbcCD_C PF13558.6 gi|530547966|ref|YP_008428498.1| - 0.031 14.5 0.1 0.53 10.6 0.1 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_27 PF13514.6 gi|530547966|ref|YP_008428498.1| - 0.037 13.6 0.0 0.06 12.9 0.0 1.2 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 gi|530547966|ref|YP_008428498.1| - 0.072 12.8 0.0 1.1 9.0 0.0 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_13 PF13166.6 gi|530547966|ref|YP_008428498.1| - 0.074 11.7 0.0 0.55 8.8 0.0 1.9 2 0 0 2 2 2 0 AAA domain BCA_ABC_TP_C PF12399.8 gi|530547966|ref|YP_008428498.1| - 0.085 12.8 0.0 0.16 11.9 0.0 1.5 1 0 0 1 1 1 0 Branched-chain amino acid ATP-binding cassette transporter TsaE PF02367.17 gi|530547966|ref|YP_008428498.1| - 0.088 12.8 0.0 0.17 11.9 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_5 PF07728.14 gi|530547966|ref|YP_008428498.1| - 0.093 12.7 0.0 0.24 11.4 0.0 1.8 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) ATPase_2 PF01637.18 gi|530547966|ref|YP_008428498.1| - 0.14 12.0 0.0 0.21 11.5 0.0 1.3 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea DUF3584 PF12128.8 gi|530547966|ref|YP_008428498.1| - 0.15 9.5 0.1 0.21 9.1 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) AAA_24 PF13479.6 gi|530547966|ref|YP_008428498.1| - 0.18 11.5 0.1 0.78 9.4 0.1 1.9 2 0 0 2 2 2 0 AAA domain MarC PF01914.17 gi|530547967|ref|YP_008428499.1| - 5.3e-61 205.6 15.3 6e-61 205.4 15.3 1.0 1 0 0 1 1 1 1 MarC family integral membrane protein COX4_pro_2 PF07835.12 gi|530547967|ref|YP_008428499.1| - 0.033 14.3 0.1 0.033 14.3 0.1 2.7 2 0 0 2 2 2 0 Bacterial aa3 type cytochrome c oxidase subunit IV DUF2645 PF10840.8 gi|530547967|ref|YP_008428499.1| - 0.32 11.6 2.9 19 5.9 0.1 2.7 2 1 1 3 3 3 0 Protein of unknown function (DUF2645) SRP54 PF00448.22 gi|530547968|ref|YP_008428500.1| - 2.2e-78 262.4 0.3 2.2e-78 262.4 0.3 1.4 2 0 0 2 2 1 1 SRP54-type protein, GTPase domain SRP54_N PF02881.19 gi|530547968|ref|YP_008428500.1| - 8.6e-14 51.5 9.2 8.6e-14 51.5 9.2 1.9 2 0 0 2 2 1 1 SRP54-type protein, helical bundle domain AAA_30 PF13604.6 gi|530547968|ref|YP_008428500.1| - 3.3e-08 33.5 1.0 5.4e-08 32.8 1.0 1.4 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.12 gi|530547968|ref|YP_008428500.1| - 3.5e-07 29.7 0.1 9.2e-07 28.3 0.1 1.7 1 1 0 1 1 1 1 Zeta toxin MeaB PF03308.16 gi|530547968|ref|YP_008428500.1| - 1.4e-06 27.5 0.2 4e-06 26.0 0.1 1.8 1 1 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_17 PF13207.6 gi|530547968|ref|YP_008428500.1| - 2.8e-06 27.8 2.5 3.9e-06 27.3 0.1 2.2 2 1 0 2 2 2 1 AAA domain MobB PF03205.14 gi|530547968|ref|YP_008428500.1| - 6.9e-06 26.0 2.8 0.00065 19.6 0.1 2.5 1 1 1 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_33 PF13671.6 gi|530547968|ref|YP_008428500.1| - 1.1e-05 25.6 0.0 2.2e-05 24.6 0.0 1.6 1 1 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|530547968|ref|YP_008428500.1| - 1.3e-05 25.3 1.7 7.2e-05 22.8 0.5 2.6 1 1 1 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain cobW PF02492.19 gi|530547968|ref|YP_008428500.1| - 1.4e-05 24.8 1.0 3.9e-05 23.3 1.0 1.7 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain Peripla_BP_4 PF13407.6 gi|530547968|ref|YP_008428500.1| - 2.3e-05 24.1 6.8 0.12 11.9 0.2 3.1 1 1 1 3 3 3 2 Periplasmic binding protein domain AAA_22 PF13401.6 gi|530547968|ref|YP_008428500.1| - 5e-05 23.6 0.0 0.00012 22.4 0.0 1.6 1 0 0 1 1 1 1 AAA domain Thymidylate_kin PF02223.17 gi|530547968|ref|YP_008428500.1| - 7.3e-05 22.5 2.0 0.00076 19.2 0.1 3.1 1 1 2 3 3 3 1 Thymidylate kinase VirC1 PF07015.11 gi|530547968|ref|YP_008428500.1| - 9.4e-05 21.8 0.0 0.00015 21.1 0.0 1.4 1 0 0 1 1 1 1 VirC1 protein MMR_HSR1 PF01926.23 gi|530547968|ref|YP_008428500.1| - 0.00017 21.7 5.2 0.0004 20.4 0.7 2.7 2 1 0 2 2 2 1 50S ribosome-binding GTPase KTI12 PF08433.10 gi|530547968|ref|YP_008428500.1| - 0.00084 18.9 0.5 0.0029 17.1 0.0 1.9 2 0 0 2 2 2 1 Chromatin associated protein KTI12 APS_kinase PF01583.20 gi|530547968|ref|YP_008428500.1| - 0.0011 18.9 0.1 0.0059 16.5 0.0 2.1 2 0 0 2 2 2 1 Adenylylsulphate kinase 6PF2K PF01591.18 gi|530547968|ref|YP_008428500.1| - 0.0015 17.9 0.1 0.0032 16.8 0.1 1.7 1 1 0 1 1 1 1 6-phosphofructo-2-kinase CbiJ PF02571.14 gi|530547968|ref|YP_008428500.1| - 0.0019 17.8 0.1 0.0026 17.3 0.1 1.4 1 0 0 1 1 1 1 Precorrin-6x reductase CbiJ/CobK KdpD PF02702.17 gi|530547968|ref|YP_008428500.1| - 0.0019 17.7 3.4 0.0075 15.8 0.1 2.3 2 0 0 2 2 2 1 Osmosensitive K+ channel His kinase sensor domain CLP1_P PF16575.5 gi|530547968|ref|YP_008428500.1| - 0.0025 17.6 0.4 2 8.2 0.0 2.5 2 0 0 2 2 2 1 mRNA cleavage and polyadenylation factor CLP1 P-loop AAA_28 PF13521.6 gi|530547968|ref|YP_008428500.1| - 0.0038 17.5 0.0 0.008 16.4 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.6 gi|530547968|ref|YP_008428500.1| - 0.0049 17.2 0.3 0.013 15.8 0.3 1.7 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|530547968|ref|YP_008428500.1| - 0.0051 17.2 0.0 0.011 16.1 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain NTPase_1 PF03266.15 gi|530547968|ref|YP_008428500.1| - 0.0072 16.3 9.1 0.075 12.9 0.3 3.3 1 1 2 3 3 3 1 NTPase Glyco_trans_4_2 PF13477.6 gi|530547968|ref|YP_008428500.1| - 0.0085 16.1 0.1 0.48 10.5 0.1 2.4 1 1 0 1 1 1 1 Glycosyl transferase 4-like ANF_receptor PF01094.28 gi|530547968|ref|YP_008428500.1| - 0.012 14.7 0.1 0.24 10.5 0.1 2.1 1 1 0 1 1 1 0 Receptor family ligand binding region LpxK PF02606.14 gi|530547968|ref|YP_008428500.1| - 0.015 14.4 0.2 0.034 13.2 0.2 1.7 1 1 0 1 1 1 0 Tetraacyldisaccharide-1-P 4'-kinase RsgA_GTPase PF03193.16 gi|530547968|ref|YP_008428500.1| - 0.016 15.1 2.7 0.13 12.1 2.1 2.7 1 1 2 3 3 3 0 RsgA GTPase ResIII PF04851.15 gi|530547968|ref|YP_008428500.1| - 0.019 15.0 0.5 0.034 14.2 0.5 1.6 1 1 0 1 1 1 0 Type III restriction enzyme, res subunit PIF1 PF05970.14 gi|530547968|ref|YP_008428500.1| - 0.021 14.0 1.3 0.03 13.5 0.1 1.7 1 1 1 2 2 2 0 PIF1-like helicase CoA_binding_2 PF13380.6 gi|530547968|ref|YP_008428500.1| - 0.022 15.2 2.2 0.25 11.9 0.1 2.8 1 1 1 2 2 2 0 CoA binding domain DUF2855 PF11017.8 gi|530547968|ref|YP_008428500.1| - 0.023 14.5 0.1 0.057 13.2 0.0 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF2855) ATP_bind_1 PF03029.17 gi|530547968|ref|YP_008428500.1| - 0.023 14.5 0.1 0.1 12.4 0.1 2.2 1 1 0 1 1 1 0 Conserved hypothetical ATP binding protein Fe-ADH PF00465.19 gi|530547968|ref|YP_008428500.1| - 0.025 13.4 3.8 0.076 11.8 0.1 2.5 3 0 0 3 3 3 0 Iron-containing alcohol dehydrogenase Toprim_Crpt PF13342.6 gi|530547968|ref|YP_008428500.1| - 0.026 14.5 0.2 0.11 12.5 0.1 2.0 2 0 0 2 2 1 0 C-terminal repeat of topoisomerase ABC_tran PF00005.27 gi|530547968|ref|YP_008428500.1| - 0.027 15.0 0.0 0.054 14.0 0.0 1.7 1 0 0 1 1 1 0 ABC transporter ZnuA PF01297.17 gi|530547968|ref|YP_008428500.1| - 0.027 13.9 0.7 0.64 9.4 0.1 2.2 1 1 1 2 2 2 0 Zinc-uptake complex component A periplasmic Arf PF00025.21 gi|530547968|ref|YP_008428500.1| - 0.029 13.8 0.1 0.14 11.6 0.0 2.2 2 0 0 2 2 2 0 ADP-ribosylation factor family T2SSE PF00437.20 gi|530547968|ref|YP_008428500.1| - 0.033 13.2 0.4 0.088 11.9 0.0 1.8 1 1 1 2 2 2 0 Type II/IV secretion system protein Torsin PF06309.11 gi|530547968|ref|YP_008428500.1| - 0.034 14.3 0.5 0.28 11.3 0.5 2.2 1 1 0 1 1 1 0 Torsin ATPgrasp_N PF18130.1 gi|530547968|ref|YP_008428500.1| - 0.046 14.3 0.8 0.27 11.8 0.2 2.7 2 1 0 2 2 1 0 ATP-grasp N-terminal domain AAA PF00004.29 gi|530547968|ref|YP_008428500.1| - 0.046 14.1 0.5 0.15 12.5 0.2 2.1 1 1 1 2 2 2 0 ATPase family associated with various cellular activities (AAA) Glyco_transf_4 PF13439.6 gi|530547968|ref|YP_008428500.1| - 0.059 13.4 0.0 0.32 11.0 0.0 2.0 1 1 1 2 2 2 0 Glycosyltransferase Family 4 AAA_7 PF12775.7 gi|530547968|ref|YP_008428500.1| - 0.06 12.9 0.0 0.11 12.0 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region Pox_A32 PF04665.12 gi|530547968|ref|YP_008428500.1| - 0.06 12.8 0.1 0.16 11.4 0.1 1.6 1 0 0 1 1 1 0 Poxvirus A32 protein TrwB_AAD_bind PF10412.9 gi|530547968|ref|YP_008428500.1| - 0.061 12.2 0.0 0.12 11.3 0.0 1.5 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain TIR-like PF10137.9 gi|530547968|ref|YP_008428500.1| - 0.067 13.2 0.0 5.4 7.0 0.0 2.6 2 0 0 2 2 2 0 Predicted nucleotide-binding protein containing TIR-like domain AAA_24 PF13479.6 gi|530547968|ref|YP_008428500.1| - 0.086 12.6 1.6 0.14 11.9 0.0 2.1 2 1 0 2 2 2 0 AAA domain ATPase_2 PF01637.18 gi|530547968|ref|YP_008428500.1| - 0.086 12.7 0.2 0.086 12.7 0.2 2.3 1 1 1 2 2 2 0 ATPase domain predominantly from Archaea CmcI PF04989.12 gi|530547968|ref|YP_008428500.1| - 0.11 12.1 0.1 13 5.4 0.0 2.2 1 1 0 2 2 2 0 Cephalosporin hydroxylase LytR_C PF13399.6 gi|530547968|ref|YP_008428500.1| - 0.13 13.3 1.6 2.6 9.1 0.5 3.0 2 1 0 2 2 1 0 LytR cell envelope-related transcriptional attenuator NACHT PF05729.12 gi|530547968|ref|YP_008428500.1| - 0.15 12.0 0.0 0.34 10.8 0.0 1.6 1 0 0 1 1 1 0 NACHT domain AAA_31 PF13614.6 gi|530547968|ref|YP_008428500.1| - 0.15 12.0 3.0 0.13 12.2 0.3 2.2 1 1 0 2 2 2 0 AAA domain DUF166 PF02593.14 gi|530547968|ref|YP_008428500.1| - 0.58 9.7 3.2 18 4.8 0.0 2.9 3 0 0 3 3 3 0 Domain of unknown function AAA_15 PF13175.6 gi|530547968|ref|YP_008428500.1| - 0.73 9.5 6.2 0.14 11.8 0.4 2.1 1 1 1 2 2 2 0 AAA ATPase domain PTPlike_phytase PF14566.6 gi|530547968|ref|YP_008428500.1| - 0.78 9.8 4.2 19 5.3 1.5 2.6 2 1 1 3 3 2 0 Inositol hexakisphosphate PTS_IIB PF02302.17 gi|530547968|ref|YP_008428500.1| - 1.2 9.9 4.7 4.4 8.1 0.0 3.3 2 2 1 3 3 3 0 PTS system, Lactose/Cellobiose specific IIB subunit OrfB_Zn_ribbon PF07282.11 gi|530547969|ref|YP_008428501.1| - 2.7e-16 59.2 0.0 5.2e-16 58.3 0.0 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|530547969|ref|YP_008428501.1| - 0.00023 21.4 6.5 0.00049 20.3 0.0 2.9 3 1 0 3 3 3 1 Probable transposase Prok-RING_1 PF14446.6 gi|530547969|ref|YP_008428501.1| - 0.0049 16.8 0.2 0.0079 16.1 0.2 1.3 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 DNA_ligase_ZBD PF03119.16 gi|530547969|ref|YP_008428501.1| - 0.0093 16.0 0.8 0.019 15.0 0.8 1.5 1 0 0 1 1 1 1 NAD-dependent DNA ligase C4 zinc finger domain TackOD1 PF18551.1 gi|530547969|ref|YP_008428501.1| - 0.031 13.9 0.5 0.11 12.2 0.2 1.9 2 0 0 2 2 2 0 Thaumarchaeal output domain 1 DZR PF12773.7 gi|530547969|ref|YP_008428501.1| - 0.056 13.5 0.6 0.096 12.7 0.6 1.2 1 0 0 1 1 1 0 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|530547969|ref|YP_008428501.1| - 0.14 11.9 3.6 0.25 11.1 3.6 1.4 1 0 0 1 1 1 0 zinc-ribbon domain Rad50_zn_hook PF04423.14 gi|530547969|ref|YP_008428501.1| - 0.72 9.7 5.5 1.3 8.9 0.1 3.5 4 0 0 4 4 4 0 Rad50 zinc hook motif zf-ribbon_3 PF13248.6 gi|530547969|ref|YP_008428501.1| - 1.5 8.3 3.6 6 6.4 3.6 1.9 1 1 0 1 1 1 0 zinc-ribbon domain Resolvase PF00239.21 gi|530547449|ref|YP_008428502.1| - 1.8e-25 89.8 0.0 2.4e-25 89.4 0.0 1.1 1 0 0 1 1 1 1 Resolvase, N terminal domain HTH_17 PF12728.7 gi|530547449|ref|YP_008428502.1| - 5.3e-13 48.9 0.1 1.2e-12 47.8 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain MerR PF00376.23 gi|530547449|ref|YP_008428502.1| - 7.6e-11 41.6 0.6 2.9e-10 39.7 0.1 2.2 2 1 0 2 2 2 1 MerR family regulatory protein MerR_1 PF13411.6 gi|530547449|ref|YP_008428502.1| - 1.2e-09 38.1 0.1 2.9e-09 36.9 0.1 1.6 1 0 0 1 1 1 1 MerR HTH family regulatory protein HTH_23 PF13384.6 gi|530547449|ref|YP_008428502.1| - 0.00042 20.0 0.6 0.0035 17.1 0.0 2.5 3 0 0 3 3 3 1 Homeodomain-like domain RE_AlwI PF09491.10 gi|530547449|ref|YP_008428502.1| - 0.0055 15.6 1.9 0.0076 15.1 1.9 1.2 1 0 0 1 1 1 1 AlwI restriction endonuclease HTH_28 PF13518.6 gi|530547449|ref|YP_008428502.1| - 0.0084 16.2 0.0 0.018 15.1 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_29 PF13551.6 gi|530547449|ref|YP_008428502.1| - 0.0094 16.0 0.0 0.025 14.6 0.0 1.8 1 1 0 1 1 1 1 Winged helix-turn helix DUF1323 PF07037.11 gi|530547449|ref|YP_008428502.1| - 0.065 13.6 1.3 0.59 10.5 0.1 2.6 2 1 1 3 3 3 0 Putative transcription regulator (DUF1323) Terminase_5 PF06056.12 gi|530547449|ref|YP_008428502.1| - 0.067 13.1 0.2 0.26 11.2 0.0 2.0 2 0 0 2 2 2 0 Putative ATPase subunit of terminase (gpP-like) GAD PF02938.14 gi|530547449|ref|YP_008428502.1| - 0.067 13.4 0.3 1.1 9.5 0.1 2.7 1 1 3 4 4 4 0 GAD domain CbiG_mid PF11761.8 gi|530547449|ref|YP_008428502.1| - 0.074 13.2 0.0 0.11 12.6 0.0 1.5 1 0 0 1 1 1 0 Cobalamin biosynthesis central region Glyco_trans_4_2 PF13477.6 gi|530547449|ref|YP_008428502.1| - 0.092 12.8 0.6 1.3 9.0 0.3 2.3 1 1 0 2 2 2 0 Glycosyl transferase 4-like DUF3673 PF12425.8 gi|530547970|ref|YP_008428503.1| - 0.1 12.5 0.1 0.12 12.3 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3673) Amidohydro_3 PF07969.11 gi|530547971|ref|YP_008428504.1| - 8.9e-110 368.3 0.0 9.9e-110 368.2 0.0 1.0 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_1 PF01979.20 gi|530547971|ref|YP_008428504.1| - 2.5e-18 66.5 0.0 8.4e-14 51.6 0.0 2.3 2 0 0 2 2 2 2 Amidohydrolase family TatD_DNase PF01026.21 gi|530547971|ref|YP_008428504.1| - 0.037 13.4 0.0 0.61 9.4 0.0 2.6 3 0 0 3 3 3 0 TatD related DNase Peptidase_M24 PF00557.24 gi|530547972|ref|YP_008428505.1| - 9.6e-07 28.7 0.1 1.1e-06 28.6 0.1 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.18 gi|530547975|ref|YP_008428508.1| - 3.1e-22 79.7 0.0 4.2e-22 79.2 0.0 1.2 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain Peptidase_M24 PF00557.24 gi|530547975|ref|YP_008428508.1| - 1.6e-15 57.4 0.0 3.8e-15 56.1 0.0 1.6 2 0 0 2 2 2 1 Metallopeptidase family M24 Metallophos_2 PF12850.7 gi|530547977|ref|YP_008428510.1| - 0.02 15.1 0.0 0.31 11.2 0.0 2.1 1 1 0 1 1 1 0 Calcineurin-like phosphoesterase superfamily domain MatE PF01554.18 gi|530547978|ref|YP_008428511.1| - 5.1e-07 29.5 20.2 3.7e-05 23.4 0.7 4.0 2 2 2 4 4 4 3 MatE Polysacc_synt_3 PF13440.6 gi|530547978|ref|YP_008428511.1| - 4.2e-06 26.2 12.1 7e-06 25.5 11.4 1.7 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein FUN14 PF04930.15 gi|530547979|ref|YP_008428512.1| - 2.8e-13 50.1 6.9 4.2e-13 49.5 6.9 1.3 1 0 0 1 1 1 1 FUN14 family SPC12 PF06645.13 gi|530547979|ref|YP_008428512.1| - 0.066 13.3 2.0 0.066 13.3 2.0 2.0 2 0 0 2 2 2 0 Microsomal signal peptidase 12 kDa subunit (SPC12) Gly-zipper_OmpA PF13436.6 gi|530547979|ref|YP_008428512.1| - 0.89 9.4 6.8 0.33 10.8 2.3 2.2 2 0 0 2 2 2 0 Glycine-zipper domain FeoB_C PF07664.12 gi|530547979|ref|YP_008428512.1| - 0.91 9.3 3.2 3.9 7.2 0.5 2.3 1 1 1 2 2 2 0 Ferrous iron transport protein B C terminus Gly-zipper_Omp PF13488.6 gi|530547979|ref|YP_008428512.1| - 3.2 7.8 10.3 1.4 8.9 5.2 2.5 2 1 0 2 2 2 0 Glycine zipper PadR PF03551.14 gi|530547980|ref|YP_008428513.1| - 2.3e-18 65.9 1.0 3.1e-18 65.5 1.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family RTP PF02334.16 gi|530547980|ref|YP_008428513.1| - 1e-05 26.1 1.7 1.1e-05 26.0 1.7 1.1 1 0 0 1 1 1 1 Replication terminator protein Mrr_N PF14338.6 gi|530547980|ref|YP_008428513.1| - 0.00063 19.8 0.0 0.48 10.6 0.0 2.3 2 0 0 2 2 2 2 Mrr N-terminal domain DUF3116 PF11313.8 gi|530547980|ref|YP_008428513.1| - 0.0014 18.4 1.5 0.0023 17.8 1.5 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF3116) DUF505 PF04458.12 gi|530547980|ref|YP_008428513.1| - 0.0036 15.8 0.9 0.0037 15.7 0.9 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF505) HTH_34 PF13601.6 gi|530547980|ref|YP_008428513.1| - 0.008 16.3 0.1 0.011 15.9 0.1 1.4 1 1 0 1 1 1 1 Winged helix DNA-binding domain Replic_Relax PF13814.6 gi|530547980|ref|YP_008428513.1| - 0.011 15.9 0.0 0.012 15.7 0.0 1.1 1 0 0 1 1 1 0 Replication-relaxation HTH_27 PF13463.6 gi|530547980|ref|YP_008428513.1| - 0.013 16.0 0.0 0.02 15.4 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_45 PF14947.6 gi|530547980|ref|YP_008428513.1| - 0.021 14.8 0.1 0.034 14.1 0.1 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix Fe_dep_repress PF01325.19 gi|530547980|ref|YP_008428513.1| - 0.042 14.1 0.0 0.1 12.8 0.0 1.7 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_12 PF08461.10 gi|530547980|ref|YP_008428513.1| - 0.05 13.6 0.4 0.28 11.2 0.4 2.1 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain HTH_5 PF01022.20 gi|530547980|ref|YP_008428513.1| - 0.15 11.9 0.0 0.89 9.5 0.0 2.1 1 1 0 1 1 1 0 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|530547980|ref|YP_008428513.1| - 0.18 11.7 0.0 0.33 10.9 0.0 1.4 1 1 0 1 1 1 0 MarR family DNA_RNApol_7kD PF03604.13 gi|530547981|ref|YP_008428514.1| - 7.4e-05 22.3 3.8 0.00012 21.7 3.8 1.3 1 0 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit Ribosomal_L40e PF01020.17 gi|530547981|ref|YP_008428514.1| - 0.00018 21.3 4.3 0.00021 21.1 4.3 1.1 1 0 0 1 1 1 1 Ribosomal L40e family zinc_ribbon_2 PF13240.6 gi|530547981|ref|YP_008428514.1| - 0.001 18.7 2.5 0.0017 18.0 2.5 1.4 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|530547981|ref|YP_008428514.1| - 0.0012 18.8 0.5 0.0013 18.7 0.5 1.2 1 0 0 1 1 1 1 Double zinc ribbon Rubredoxin_2 PF18073.1 gi|530547981|ref|YP_008428514.1| - 0.0092 15.7 1.0 3.3 7.5 0.1 2.1 2 0 0 2 2 2 2 Rubredoxin metal binding domain Toxin_5 PF05294.13 gi|530547981|ref|YP_008428514.1| - 0.022 15.2 2.4 0.029 14.8 2.4 1.2 1 0 0 1 1 1 0 Scorpion short toxin zf-ribbon_3 PF13248.6 gi|530547981|ref|YP_008428514.1| - 0.032 13.6 2.4 0.048 13.1 2.4 1.3 1 0 0 1 1 1 0 zinc-ribbon domain zf-HIT PF04438.16 gi|530547981|ref|YP_008428514.1| - 0.042 13.7 3.0 0.6 10.0 0.2 2.1 2 0 0 2 2 2 0 HIT zinc finger zinc_ribbon_10 PF10058.9 gi|530547981|ref|YP_008428514.1| - 0.053 13.3 2.0 0.14 11.9 0.1 2.0 2 0 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein HypA PF01155.19 gi|530547981|ref|YP_008428514.1| - 0.19 11.8 0.8 0.21 11.6 0.8 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA RNA_POL_M_15KD PF02150.16 gi|530547981|ref|YP_008428514.1| - 0.58 10.1 4.4 1.6 8.6 1.3 2.2 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit PNP_UDP_1 PF01048.20 gi|530547982|ref|YP_008428515.1| - 3.6e-45 154.0 0.5 4.6e-45 153.7 0.5 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily PALP PF00291.25 gi|530547983|ref|YP_008428516.1| - 4.5e-65 219.9 0.0 5.6e-65 219.6 0.0 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Nre_N PF04894.12 gi|530547984|ref|YP_008428517.1| - 5.2e-105 351.1 0.0 6.5e-105 350.8 0.0 1.1 1 0 0 1 1 1 1 Archaeal Nre, N-terminal Nre_C PF04895.12 gi|530547984|ref|YP_008428517.1| - 5.6e-37 126.0 0.7 9.5e-37 125.3 0.7 1.4 1 0 0 1 1 1 1 Archaeal Nre, C-terminal Phosphodiest PF01663.22 gi|530547985|ref|YP_008428518.1| - 4.2e-49 168.0 0.1 4.8e-49 167.9 0.1 1.0 1 0 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Metalloenzyme PF01676.18 gi|530547985|ref|YP_008428518.1| - 5e-06 26.1 0.0 0.00011 21.7 0.0 2.1 2 0 0 2 2 2 1 Metalloenzyme superfamily Sulfatase PF00884.23 gi|530547985|ref|YP_008428518.1| - 4.1e-05 23.1 0.0 0.011 15.1 0.0 2.3 1 1 0 1 1 1 1 Sulfatase Bac_rhamnosid_C PF17390.2 gi|530547986|ref|YP_008428519.1| - 0.14 12.0 0.0 0.29 11.0 0.0 1.5 1 0 0 1 1 1 0 Bacterial alpha-L-rhamnosidase C-terminal domain TRAM_LAG1_CLN8 PF03798.16 gi|530547986|ref|YP_008428519.1| - 0.21 11.3 0.0 0.36 10.5 0.0 1.3 1 1 0 1 1 1 0 TLC domain Ribosomal_S7 PF00177.21 gi|530547987|ref|YP_008428520.1| - 5.2e-39 133.3 4.6 7.5e-39 132.8 4.6 1.2 1 0 0 1 1 1 1 Ribosomal protein S7p/S5e DUF1945 PF09178.10 gi|530547987|ref|YP_008428520.1| - 0.14 12.4 0.3 0.41 10.9 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF1945) Prok-TraM PF09228.10 gi|530547987|ref|YP_008428520.1| - 0.16 12.4 2.3 8 6.9 0.2 2.3 2 0 0 2 2 2 0 Prokaryotic Transcriptional repressor TraM Ribosom_S12_S23 PF00164.25 gi|530547988|ref|YP_008428521.1| - 8.3e-48 160.7 1.6 1e-47 160.4 1.6 1.1 1 0 0 1 1 1 1 Ribosomal protein S12/S23 KH_2 PF07650.17 gi|530547989|ref|YP_008428522.1| - 1.6e-22 79.1 3.2 3.5e-18 65.2 0.2 2.2 1 1 1 2 2 2 2 KH domain KH_5 PF13184.6 gi|530547989|ref|YP_008428522.1| - 3.1e-08 33.6 2.8 2.8e-07 30.5 0.2 2.6 1 1 2 3 3 3 1 NusA-like KH domain KH_4 PF13083.6 gi|530547989|ref|YP_008428522.1| - 9.2e-08 31.9 1.6 0.00013 21.8 0.5 2.2 2 0 0 2 2 2 2 KH domain KH_1 PF00013.29 gi|530547989|ref|YP_008428522.1| - 4.7e-06 26.3 3.0 0.025 14.4 1.1 2.9 2 1 0 2 2 2 2 KH domain Nic96 PF04097.14 gi|530547989|ref|YP_008428522.1| - 0.087 11.3 0.0 0.093 11.2 0.0 1.1 1 0 0 1 1 1 0 Nup93/Nic96 DNase-RNase PF02577.14 gi|530547989|ref|YP_008428522.1| - 0.15 11.7 0.0 0.22 11.2 0.0 1.3 1 0 0 1 1 1 0 Bifunctional nuclease Ribosomal_L7Ae PF01248.26 gi|530547990|ref|YP_008428523.1| - 1.9e-21 75.6 0.0 2.1e-21 75.5 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family RNA_pol_Rpb1_5 PF04998.17 gi|530547991|ref|YP_008428524.1| - 2.4e-56 191.1 1.8 3.4e-56 190.6 1.8 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 PG_binding_4 PF12229.8 gi|530547991|ref|YP_008428524.1| - 0.0026 18.0 1.4 0.034 14.4 0.1 2.4 2 0 0 2 2 2 1 Putative peptidoglycan binding domain DUF2807 PF10988.8 gi|530547991|ref|YP_008428524.1| - 0.039 13.7 0.2 0.077 12.8 0.2 1.5 1 0 0 1 1 1 0 Putative auto-transporter adhesin, head GIN domain DUF4533 PF15047.6 gi|530547991|ref|YP_008428524.1| - 0.069 12.7 1.6 1.2 8.6 0.6 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF4533) DUF2703 PF10865.8 gi|530547991|ref|YP_008428524.1| - 0.13 12.4 0.5 5.8 7.1 0.0 2.7 2 0 0 2 2 2 0 Domain of unknown function (DUF2703) Imm74 PF15603.6 gi|530547991|ref|YP_008428524.1| - 0.14 12.4 1.2 14 6.0 0.1 2.5 2 0 0 2 2 2 0 Immunity protein 74 Bac_DNA_binding PF00216.21 gi|530547991|ref|YP_008428524.1| - 0.24 11.7 2.7 0.83 9.9 0.2 2.8 3 0 0 3 3 3 0 Bacterial DNA-binding protein JCAD PF15351.6 gi|530547991|ref|YP_008428524.1| - 2 6.1 4.1 1 7.0 1.1 1.7 2 0 0 2 2 2 0 Junctional protein associated with coronary artery disease RNA_pol_Rpb1_1 PF04997.12 gi|530547992|ref|YP_008428525.1| - 1.1e-109 366.6 0.0 1.5e-109 366.1 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 1 RNA_pol_Rpb1_2 PF00623.20 gi|530547992|ref|YP_008428525.1| - 6.4e-75 250.9 0.1 1e-74 250.3 0.1 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 2 RNA_pol_Rpb1_3 PF04983.18 gi|530547992|ref|YP_008428525.1| - 1.1e-40 139.1 0.0 2e-40 138.3 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 3 RNA_pol_Rpb1_4 PF05000.17 gi|530547992|ref|YP_008428525.1| - 9.8e-32 109.1 0.0 2.2e-31 108.0 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 4 RNA_pol_Rpb1_5 PF04998.17 gi|530547992|ref|YP_008428525.1| - 2.8e-29 102.4 0.0 6.1e-29 101.3 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 TraB PF01963.17 gi|530547992|ref|YP_008428525.1| - 0.16 11.8 0.1 1 9.2 0.1 2.1 2 0 0 2 2 2 0 TraB family DIPSY PF11763.8 gi|530547992|ref|YP_008428525.1| - 0.21 11.8 0.0 0.44 10.7 0.0 1.5 1 0 0 1 1 1 0 Cell-wall adhesin ligand-binding C-terminal DZR PF12773.7 gi|530547992|ref|YP_008428525.1| - 0.26 11.4 1.3 6.1 7.0 0.3 2.3 2 0 0 2 2 2 0 Double zinc ribbon ADK_lid PF05191.14 gi|530547992|ref|YP_008428525.1| - 0.97 9.5 4.6 7.2 6.7 0.1 3.2 2 1 0 2 2 2 0 Adenylate kinase, active site lid Nudix_N_2 PF14803.6 gi|530547992|ref|YP_008428525.1| - 1.2 9.2 8.0 0.12 12.3 0.3 3.1 3 0 0 3 3 3 0 Nudix N-terminal zf-ribbon_3 PF13248.6 gi|530547992|ref|YP_008428525.1| - 1.5 8.4 4.1 1.4 8.4 0.1 2.7 3 0 0 3 3 3 0 zinc-ribbon domain zf-RING_7 PF02591.15 gi|530547992|ref|YP_008428525.1| - 3.9 7.7 7.6 45 4.4 0.6 3.8 4 0 0 4 4 4 0 C4-type zinc ribbon domain RNA_pol_Rpb2_6 PF00562.28 gi|530547993|ref|YP_008428526.1| - 3.1e-131 438.0 0.0 5.1e-131 437.3 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 6 RNA_pol_Rpb2_1 PF04563.15 gi|530547993|ref|YP_008428526.1| - 5.2e-53 179.6 0.0 7.7e-53 179.0 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase beta subunit RNA_pol_Rpb2_2 PF04561.14 gi|530547993|ref|YP_008428526.1| - 1.9e-39 135.3 0.1 3.9e-39 134.3 0.1 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 2 RNA_pol_Rpb2_7 PF04560.20 gi|530547993|ref|YP_008428526.1| - 5.8e-31 106.7 0.1 1.4e-30 105.5 0.1 1.7 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 7 RNA_pol_Rpb2_3 PF04565.16 gi|530547993|ref|YP_008428526.1| - 5.2e-30 103.4 0.1 9.6e-30 102.6 0.1 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 3 RNA_pol_Rpb2_4 PF04566.13 gi|530547993|ref|YP_008428526.1| - 1e-19 70.5 1.5 2.7e-19 69.2 1.5 1.8 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 4 RNA_pol_Rpb2_5 PF04567.17 gi|530547993|ref|YP_008428526.1| - 7e-09 36.1 2.7 2.9e-08 34.2 2.7 2.1 1 1 0 1 1 1 1 RNA polymerase Rpb2, domain 5 NOB1_Zn_bind PF08772.11 gi|530547993|ref|YP_008428526.1| - 0.0034 17.5 0.1 0.0097 16.0 0.1 1.8 1 0 0 1 1 1 1 Nin one binding (NOB1) Zn-ribbon like Auto_anti-p27 PF06677.12 gi|530547993|ref|YP_008428526.1| - 0.26 11.5 1.5 0.48 10.6 1.5 1.5 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) TF_Zn_Ribbon PF08271.12 gi|530547993|ref|YP_008428526.1| - 0.71 9.4 3.3 11 5.6 0.2 2.6 1 1 1 2 2 2 0 TFIIB zinc-binding RNA_pol_Rpb5_C PF01191.19 gi|530547994|ref|YP_008428527.1| - 5.5e-32 109.5 0.2 6.1e-32 109.3 0.2 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb5, C-terminal domain Rad50_zn_hook PF04423.14 gi|530547994|ref|YP_008428527.1| - 0.042 13.7 1.2 0.061 13.2 1.2 1.3 1 0 0 1 1 1 0 Rad50 zinc hook motif CDC48_N PF02359.18 gi|530547994|ref|YP_008428527.1| - 0.17 12.1 0.0 0.37 11.0 0.0 1.5 1 1 1 2 2 2 0 Cell division protein 48 (CDC48), N-terminal domain DDE_Tnp_IS66 PF03050.14 gi|530547995|ref|YP_008428528.1| - 0.0026 17.3 0.0 0.003 17.1 0.0 1.1 1 0 0 1 1 1 1 Transposase IS66 family dUTPase PF00692.19 gi|530547997|ref|YP_008428530.1| - 2.7e-15 56.2 0.0 3.2e-13 49.5 0.0 2.0 1 1 1 2 2 2 2 dUTPase DCD PF06559.11 gi|530547997|ref|YP_008428530.1| - 0.00036 19.4 0.0 0.46 9.2 0.0 2.5 1 1 1 2 2 2 2 2'-deoxycytidine 5'-triphosphate deaminase (DCD) Ribosomal_60s PF00428.19 gi|530547998|ref|YP_008428531.1| - 1.4e-22 80.0 21.8 1.7e-22 79.8 21.8 1.1 1 0 0 1 1 1 1 60s Acidic ribosomal protein TetR_C_31 PF17940.1 gi|530547998|ref|YP_008428531.1| - 7.7e-05 22.9 3.2 9.4e-05 22.6 3.2 1.4 1 1 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain PhetRS_B1 PF18262.1 gi|530547998|ref|YP_008428531.1| - 0.0033 17.6 0.4 0.011 15.9 0.4 2.0 1 1 0 1 1 1 1 Phe-tRNA synthetase beta subunit B1 domain DUF3391 PF11871.8 gi|530547998|ref|YP_008428531.1| - 2.5 8.7 5.6 3.1 8.3 5.6 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF3391) DUF1840 PF08895.11 gi|530547998|ref|YP_008428531.1| - 3.4 8.0 8.5 10 6.5 8.5 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF1840) RL10P_insert PF17777.1 gi|530547999|ref|YP_008428532.1| - 1.8e-23 82.3 0.2 3.9e-23 81.2 0.2 1.6 1 0 0 1 1 1 1 Insertion domain in 60S ribosomal protein L10P Ribosomal_L10 PF00466.20 gi|530547999|ref|YP_008428532.1| - 1.1e-21 76.8 0.6 2.6e-21 75.6 0.1 1.9 2 0 0 2 2 2 1 Ribosomal protein L10 Ribosomal_60s PF00428.19 gi|530547999|ref|YP_008428532.1| - 2.1e-05 25.0 21.1 3e-05 24.5 16.1 3.6 4 1 0 4 4 4 1 60s Acidic ribosomal protein 7TMR-HDED PF07697.11 gi|530547999|ref|YP_008428532.1| - 2.2 8.3 8.4 0.31 11.1 0.3 2.6 3 0 0 3 3 3 0 7TM-HD extracellular TFIIE-A_C PF11521.8 gi|530547999|ref|YP_008428532.1| - 5 7.5 13.0 6.2 7.2 0.5 2.4 2 0 0 2 2 2 0 C-terminal general transcription factor TFIIE alpha Ribosomal_L1 PF00687.21 gi|530548000|ref|YP_008428533.1| - 1.7e-49 168.3 0.2 2e-49 168.1 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein L1p/L10e family FAM91_C PF14648.6 gi|530548000|ref|YP_008428533.1| - 0.067 12.0 0.0 0.1 11.4 0.0 1.2 1 0 0 1 1 1 0 FAM91 C-terminus PTS_IIB PF02302.17 gi|530548000|ref|YP_008428533.1| - 0.14 12.9 2.1 0.69 10.6 0.1 2.7 2 1 1 3 3 3 0 PTS system, Lactose/Cellobiose specific IIB subunit Ribosomal_L11_N PF03946.14 gi|530548001|ref|YP_008428534.1| - 2.5e-24 84.9 2.5 2.6e-24 84.8 1.2 1.7 2 0 0 2 2 2 1 Ribosomal protein L11, N-terminal domain Ribosomal_L11 PF00298.19 gi|530548001|ref|YP_008428534.1| - 3.7e-24 85.0 2.0 6.1e-24 84.3 2.0 1.4 1 0 0 1 1 1 1 Ribosomal protein L11, RNA binding domain efThoc1 PF11957.8 gi|530548001|ref|YP_008428534.1| - 0.14 10.8 0.0 0.17 10.5 0.0 1.1 1 0 0 1 1 1 0 THO complex subunit 1 transcription elongation factor Spt5-NGN PF03439.13 gi|530548002|ref|YP_008428535.1| - 9.3e-24 83.1 0.1 1.6e-23 82.4 0.1 1.4 1 0 0 1 1 1 1 Early transcription elongation factor of RNA pol II, NGN section KOW PF00467.29 gi|530548002|ref|YP_008428535.1| - 1.3e-08 34.4 2.9 1.3e-08 34.4 0.9 2.1 3 0 0 3 3 3 1 KOW motif SecE PF00584.20 gi|530548003|ref|YP_008428536.1| - 4.1e-08 33.0 0.1 4.8e-08 32.8 0.1 1.1 1 0 0 1 1 1 1 SecE/Sec61-gamma subunits of protein translocation complex DUF2839 PF10999.8 gi|530548003|ref|YP_008428536.1| - 0.084 13.2 0.1 0.091 13.1 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2839) Tubulin PF00091.25 gi|530548004|ref|YP_008428537.1| - 4.6e-47 160.8 0.4 7.8e-47 160.0 0.4 1.4 1 0 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain FtsZ_C PF12327.8 gi|530548004|ref|YP_008428537.1| - 1.5e-33 115.0 2.6 7.3e-33 112.7 1.3 2.6 2 0 0 2 2 2 1 FtsZ family, C-terminal domain DUF4147 PF13660.6 gi|530548004|ref|YP_008428537.1| - 0.0046 16.5 4.5 0.057 13.0 0.6 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF4147) DUF3236 PF11576.8 gi|530548004|ref|YP_008428537.1| - 0.021 14.5 0.7 0.021 14.5 0.7 2.4 3 0 0 3 3 3 0 Protein of unknown function (DUF3236) ThiF PF00899.21 gi|530548004|ref|YP_008428537.1| - 0.037 13.4 0.1 0.14 11.4 0.0 1.9 2 0 0 2 2 2 0 ThiF family NAD_binding_7 PF13241.6 gi|530548004|ref|YP_008428537.1| - 0.069 13.6 0.5 0.52 10.8 0.1 2.5 2 1 0 2 2 2 0 Putative NAD(P)-binding NAD_binding_10 PF13460.6 gi|530548004|ref|YP_008428537.1| - 0.098 12.5 1.0 0.22 11.4 0.0 2.0 2 0 0 2 2 2 0 NAD(P)H-binding Peripla_BP_6 PF13458.6 gi|530548004|ref|YP_008428537.1| - 0.11 12.2 0.1 0.41 10.3 0.1 1.8 1 1 1 2 2 2 0 Periplasmic binding protein Tubulin_2 PF13809.6 gi|530548004|ref|YP_008428537.1| - 0.18 11.0 6.5 0.63 9.2 1.0 2.4 1 1 0 2 2 2 0 Tubulin like GCH_III PF05165.12 gi|530548004|ref|YP_008428537.1| - 1 8.6 4.4 2.1 7.5 1.3 2.5 2 1 0 2 2 2 0 GTP cyclohydrolase III tRNA_deacylase PF04414.12 gi|530548005|ref|YP_008428538.1| - 9.7e-69 231.0 0.5 1.2e-68 230.7 0.5 1.1 1 0 0 1 1 1 1 D-aminoacyl-tRNA deacylase NMT1_3 PF16868.5 gi|530548006|ref|YP_008428539.1| - 4.7e-86 288.8 3.9 5.5e-86 288.5 3.9 1.0 1 0 0 1 1 1 1 NMT1-like family NMT1 PF09084.11 gi|530548006|ref|YP_008428539.1| - 4.2e-12 46.5 0.8 2e-11 44.3 0.6 2.1 1 1 1 2 2 2 1 NMT1/THI5 like Phosphonate-bd PF12974.7 gi|530548006|ref|YP_008428539.1| - 1.8e-08 34.3 5.5 7.3e-08 32.3 5.5 1.8 1 1 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein SBP_bac_3 PF00497.20 gi|530548006|ref|YP_008428539.1| - 3.7e-06 26.6 1.7 2.8e-05 23.7 0.1 2.2 2 0 0 2 2 2 1 Bacterial extracellular solute-binding proteins, family 3 OpuAC PF04069.12 gi|530548006|ref|YP_008428539.1| - 0.0025 17.4 1.9 0.0038 16.8 1.9 1.3 1 0 0 1 1 1 1 Substrate binding domain of ABC-type glycine betaine transport system NMT1_2 PF13379.6 gi|530548006|ref|YP_008428539.1| - 0.0045 16.7 0.9 0.007 16.1 0.9 1.3 1 0 0 1 1 1 1 NMT1-like family TctC PF03401.14 gi|530548006|ref|YP_008428539.1| - 0.015 14.3 0.3 0.03 13.4 0.2 1.4 1 1 0 1 1 1 0 Tripartite tricarboxylate transporter family receptor DUF1850 PF08905.11 gi|530548007|ref|YP_008428540.1| - 1.1e-10 41.7 0.0 1.5e-10 41.2 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1850) 40S_S4_C PF16121.5 gi|530548007|ref|YP_008428540.1| - 0.014 15.0 0.0 0.025 14.2 0.0 1.4 1 0 0 1 1 1 0 40S ribosomal protein S4 C-terminus Glyoxalase_4 PF13669.6 gi|530548007|ref|YP_008428540.1| - 0.16 12.2 0.0 0.21 11.8 0.0 1.2 1 0 0 1 1 1 0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DctM PF06808.12 gi|530548008|ref|YP_008428541.1| - 1.1e-85 288.0 46.9 1e-55 189.3 22.6 2.6 1 1 1 2 2 2 2 Tripartite ATP-independent periplasmic transporter, DctM component S-antigen PF05756.11 gi|530548008|ref|YP_008428541.1| - 0.36 11.2 2.1 19 5.7 0.5 2.7 2 0 0 2 2 2 0 S-antigen protein Glycophorin_A PF01102.18 gi|530548008|ref|YP_008428541.1| - 6.1 7.1 6.8 24 5.2 0.1 3.1 3 0 0 3 3 3 0 Glycophorin A Class_IIIsignal PF04021.12 gi|530548009|ref|YP_008428542.1| - 0.00099 19.0 3.2 0.0015 18.5 3.2 1.3 1 0 0 1 1 1 1 Class III signal peptide MSC PF09402.10 gi|530548009|ref|YP_008428542.1| - 0.0023 17.5 2.6 0.0024 17.4 2.6 1.0 1 0 0 1 1 1 1 Man1-Src1p-C-terminal domain DUF4083 PF13314.6 gi|530548009|ref|YP_008428542.1| - 0.034 14.1 2.9 0.043 13.8 2.9 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4083) DUF4736 PF15883.5 gi|530548009|ref|YP_008428542.1| - 0.068 12.9 2.2 0.07 12.9 2.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4736) DUF2500 PF10694.9 gi|530548009|ref|YP_008428542.1| - 0.19 12.2 1.5 0.22 12.0 1.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2500) GerE PF00196.19 gi|530548010|ref|YP_008428543.1| - 0.022 14.3 0.3 5.8 6.5 0.0 2.1 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family DAGK_acc PF00609.19 gi|530548010|ref|YP_008428543.1| - 0.033 14.5 0.0 0.037 14.4 0.0 1.0 1 0 0 1 1 1 0 Diacylglycerol kinase accessory domain Arabinose_Isome PF02610.15 gi|530548011|ref|YP_008428544.1| - 6.5e-06 25.6 0.0 9.5e-06 25.1 0.0 1.2 1 0 0 1 1 1 1 L-arabinose isomerase PIN_5 PF08745.11 gi|530548012|ref|YP_008428545.1| - 6.9e-67 224.9 0.6 7.9e-67 224.7 0.6 1.0 1 0 0 1 1 1 1 PINc domain ribonuclease ALC PF17527.2 gi|530548012|ref|YP_008428545.1| - 0.018 14.7 0.0 0.025 14.2 0.0 1.5 1 0 0 1 1 1 0 Phage ALC protein Acetyltransf_1 PF00583.25 gi|530548014|ref|YP_008428547.1| - 5.9e-17 62.0 0.0 7.4e-17 61.7 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|530548014|ref|YP_008428547.1| - 3.5e-14 52.8 0.0 5.1e-14 52.3 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|530548014|ref|YP_008428547.1| - 8.8e-13 48.5 0.0 1.3e-12 47.9 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|530548014|ref|YP_008428547.1| - 7.1e-11 42.5 0.1 9.2e-11 42.1 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|530548014|ref|YP_008428547.1| - 5.7e-06 26.2 0.0 1e-05 25.4 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.7 gi|530548014|ref|YP_008428547.1| - 2.1e-05 24.6 0.0 3.1e-05 24.1 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.6 gi|530548014|ref|YP_008428547.1| - 3.1e-05 23.7 0.0 5.8e-05 22.8 0.0 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain PanZ PF12568.8 gi|530548014|ref|YP_008428547.1| - 9.2e-05 22.2 0.0 0.00016 21.4 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain, PanZ Acetyltransf_3 PF13302.7 gi|530548014|ref|YP_008428547.1| - 0.00091 19.9 0.0 0.0014 19.4 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain MqsR_toxin PF15723.5 gi|530548014|ref|YP_008428547.1| - 0.02 15.3 0.1 0.046 14.1 0.0 1.6 2 0 0 2 2 2 0 Motility quorum-sensing regulator, toxin of MqsA Acetyltransf_CG PF14542.6 gi|530548014|ref|YP_008428547.1| - 0.026 14.6 0.0 0.041 14.0 0.0 1.4 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase SHOCT PF09851.9 gi|530548015|ref|YP_008428548.1| - 4.9e-10 38.8 2.4 8.9e-10 38.0 2.4 1.5 1 1 0 1 1 1 1 Short C-terminal domain GvpG PF05120.12 gi|530548015|ref|YP_008428548.1| - 0.0022 18.0 0.4 0.0023 17.9 0.4 1.0 1 0 0 1 1 1 1 Gas vesicle protein G DUF1707 PF08044.11 gi|530548015|ref|YP_008428548.1| - 0.018 15.1 0.0 0.018 15.1 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1707) DMAP_binding PF06464.11 gi|530548015|ref|YP_008428548.1| - 0.056 14.2 3.3 0.064 14.1 3.3 1.1 1 0 0 1 1 1 0 DMAP1-binding Domain VPS28 PF03997.12 gi|530548015|ref|YP_008428548.1| - 0.079 12.6 0.4 0.09 12.4 0.4 1.1 1 0 0 1 1 1 0 VPS28 protein bPH_3 PF14470.6 gi|530548016|ref|YP_008428549.1| - 5.5e-09 36.3 0.2 6.5e-09 36.0 0.2 1.1 1 0 0 1 1 1 1 Bacterial PH domain PKD PF00801.20 gi|530548018|ref|YP_008428551.1| - 1.5e-38 130.5 7.0 5.4e-16 58.2 0.1 3.8 3 0 0 3 3 3 3 PKD domain FG-GAP PF01839.23 gi|530548018|ref|YP_008428551.1| - 2.1e-15 56.5 30.6 0.0031 17.6 0.1 6.9 6 0 0 6 6 6 5 FG-GAP repeat VCBS PF13517.6 gi|530548018|ref|YP_008428551.1| - 2.3e-14 53.7 39.4 1.1e-06 29.1 2.1 5.6 1 1 3 5 5 5 5 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella PKD_3 PF16820.5 gi|530548018|ref|YP_008428551.1| - 6.9e-05 22.5 3.1 0.078 12.7 0.1 3.9 3 0 0 3 3 3 2 PKD-like domain BBS2_Mid PF14783.6 gi|530548018|ref|YP_008428551.1| - 0.0049 16.9 3.8 19 5.3 0.0 5.1 5 1 1 6 6 6 0 Ciliary BBSome complex subunit 2, middle region fn3_3 PF14686.6 gi|530548018|ref|YP_008428551.1| - 0.084 12.7 2.8 0.16 11.8 0.1 2.9 3 0 0 3 3 3 0 Polysaccharide lyase family 4, domain II Spore_GerQ PF09671.10 gi|530548018|ref|YP_008428551.1| - 0.089 12.8 0.1 0.55 10.3 0.1 2.4 1 0 0 1 1 1 0 Spore coat protein (Spore_GerQ) RAP1 PF07218.11 gi|530548018|ref|YP_008428551.1| - 1.9 6.7 10.3 3.6 5.7 10.3 1.4 1 0 0 1 1 1 0 Rhoptry-associated protein 1 (RAP-1) GKAP PF03359.13 gi|530548018|ref|YP_008428551.1| - 1.9 8.0 5.2 47 3.4 0.0 2.2 2 0 0 2 2 2 0 Guanylate-kinase-associated protein (GKAP) protein Y_Y_Y PF07495.13 gi|530548018|ref|YP_008428551.1| - 3.4 7.7 7.6 29 4.7 0.1 4.5 5 0 0 5 5 4 0 Y_Y_Y domain KAR9 PF08580.10 gi|530548018|ref|YP_008428551.1| - 3.6 6.0 8.6 5.4 5.4 8.6 1.1 1 0 0 1 1 1 0 Yeast cortical protein KAR9 MGC-24 PF05283.11 gi|530548018|ref|YP_008428551.1| - 5.5 7.4 13.0 16 5.9 13.0 1.7 1 0 0 1 1 1 0 Multi-glycosylated core protein 24 (MGC-24), sialomucin BtpA PF03437.15 gi|530548019|ref|YP_008428552.1| - 1.8e-111 371.7 0.1 2e-111 371.5 0.1 1.0 1 0 0 1 1 1 1 BtpA family Bac_luciferase PF00296.20 gi|530548019|ref|YP_008428552.1| - 0.0042 16.6 0.0 0.032 13.6 0.0 2.0 2 0 0 2 2 2 1 Luciferase-like monooxygenase PcrB PF01884.17 gi|530548019|ref|YP_008428552.1| - 0.015 14.7 0.2 1.2 8.5 0.0 2.7 2 1 1 3 3 3 0 PcrB family Phage_integr_3 PF16795.5 gi|530548020|ref|YP_008428553.1| - 1.1e-47 162.0 2.4 1.1e-47 162.0 2.4 1.6 2 0 0 2 2 2 1 Archaeal phage integrase RHH_1 PF01402.21 gi|530548021|ref|YP_008428554.1| - 0.002 18.0 0.0 0.003 17.4 0.0 1.3 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family Class_IIIsignal PF04021.12 gi|530548022|ref|YP_008428555.1| - 3.3e-08 33.3 2.4 4e-08 33.0 2.4 1.1 1 0 0 1 1 1 1 Class III signal peptide DUF4184 PF13803.6 gi|530548023|ref|YP_008428556.1| - 0.023 14.4 1.0 0.028 14.1 1.0 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4184) CarbopepD_reg_2 PF13715.6 gi|530548024|ref|YP_008428557.1| - 2.6e-06 27.3 2.9 4.5e-05 23.4 0.2 3.7 3 0 0 3 3 3 1 CarboxypepD_reg-like domain PEGA PF08308.11 gi|530548024|ref|YP_008428557.1| - 0.00038 20.3 0.2 0.013 15.3 0.0 3.1 2 0 0 2 2 2 1 PEGA domain DUF3244 PF11589.8 gi|530548024|ref|YP_008428557.1| - 0.0067 16.5 2.9 0.036 14.1 0.1 3.5 3 1 0 3 3 3 1 Domain of unknown function (DUF3244) CarboxypepD_reg PF13620.6 gi|530548024|ref|YP_008428557.1| - 0.018 15.3 6.1 0.067 13.5 0.1 4.4 4 0 0 4 4 4 0 Carboxypeptidase regulatory-like domain CBM_35 PF16990.5 gi|530548024|ref|YP_008428557.1| - 0.022 15.0 1.8 0.55 10.5 0.1 3.4 2 1 1 3 3 3 0 Carbohydrate binding module (family 35) TrbC PF04956.13 gi|530548025|ref|YP_008428558.1| - 0.034 14.4 5.5 0.023 14.9 2.9 2.1 2 0 0 2 2 2 0 TrbC/VIRB2 family PhoU PF01895.19 gi|530548025|ref|YP_008428558.1| - 0.05 14.1 0.3 0.15 12.5 0.3 1.8 1 1 0 1 1 1 0 PhoU domain DUF2252 PF10009.9 gi|530548025|ref|YP_008428558.1| - 0.063 12.3 1.8 0.12 11.4 1.8 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2252) HHH_5 PF14520.6 gi|530548025|ref|YP_008428558.1| - 0.16 12.6 0.3 0.48 11.1 0.3 1.8 1 0 0 1 1 1 0 Helix-hairpin-helix domain Muted PF14942.6 gi|530548025|ref|YP_008428558.1| - 5.6 7.3 6.7 0.74 10.2 2.2 1.8 2 0 0 2 2 2 0 Organelle biogenesis, Muted-like protein DUF805 PF05656.14 gi|530548027|ref|YP_008428560.1| - 0.009 16.4 1.7 0.012 16.0 1.7 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF805) Glyco_transf_22 PF03901.17 gi|530548027|ref|YP_008428560.1| - 0.023 14.0 1.3 0.027 13.7 1.0 1.2 1 1 0 1 1 1 0 Alg9-like mannosyltransferase family fn3 PF00041.21 gi|530548029|ref|YP_008428562.1| - 0.0048 17.2 3.3 0.015 15.6 0.5 2.8 2 1 1 3 3 3 1 Fibronectin type III domain DUF1573 PF07610.11 gi|530548029|ref|YP_008428562.1| - 0.041 13.9 4.7 10 6.2 0.1 3.4 2 1 0 2 2 2 0 Protein of unknown function (DUF1573) Fe-S_biosyn PF01521.20 gi|530548029|ref|YP_008428562.1| - 0.049 13.8 0.1 0.18 12.0 0.1 1.8 1 1 0 1 1 1 0 Iron-sulphur cluster biosynthesis HlyD_3 PF13437.6 gi|530548029|ref|YP_008428562.1| - 0.053 14.2 0.2 22 5.8 0.0 2.8 2 1 1 3 3 3 0 HlyD family secretion protein DUF4625 PF15418.6 gi|530548029|ref|YP_008428562.1| - 0.088 13.0 2.6 2.1 8.6 0.7 3.0 2 2 0 2 2 2 0 Domain of unknown function (DUF4625) GPI-anchored PF10342.9 gi|530548029|ref|YP_008428562.1| - 0.11 13.2 0.3 0.11 13.2 0.3 3.2 1 1 1 3 3 3 0 Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family O-antigen_lig PF13425.6 gi|530548030|ref|YP_008428563.1| - 0.059 12.2 0.1 0.072 11.9 0.1 1.1 1 0 0 1 1 1 0 O-antigen ligase like membrane protein ZapB PF06005.12 gi|530548032|ref|YP_008428565.1| - 7e-08 32.8 25.8 1.2e-06 28.8 8.2 2.6 2 1 0 2 2 2 2 Cell division protein ZapB KASH_CCD PF14662.6 gi|530548032|ref|YP_008428565.1| - 1.3e-06 28.4 24.8 2.2e-06 27.6 24.8 1.3 1 0 0 1 1 1 1 Coiled-coil region of CCDC155 or KASH HALZ PF02183.18 gi|530548032|ref|YP_008428565.1| - 2e-06 27.9 28.6 0.0041 17.3 6.9 4.3 2 2 2 4 4 4 3 Homeobox associated leucine zipper DivIC PF04977.15 gi|530548032|ref|YP_008428565.1| - 2.5e-05 24.0 32.8 0.0014 18.4 0.2 4.6 2 1 3 5 5 4 3 Septum formation initiator RasGAP_C PF03836.15 gi|530548032|ref|YP_008428565.1| - 4.1e-05 23.7 22.4 0.001 19.2 11.1 2.2 1 1 1 2 2 2 2 RasGAP C-terminus GAS PF13851.6 gi|530548032|ref|YP_008428565.1| - 8.2e-05 22.0 26.0 0.00012 21.5 26.0 1.1 1 0 0 1 1 1 1 Growth-arrest specific micro-tubule binding bZIP_1 PF00170.21 gi|530548032|ref|YP_008428565.1| - 0.00014 21.9 25.8 0.0026 17.8 8.0 3.4 1 1 2 3 3 3 2 bZIP transcription factor APG6_N PF17675.1 gi|530548032|ref|YP_008428565.1| - 0.00094 19.7 25.9 0.001 19.6 7.6 2.2 1 1 1 2 2 2 1 Apg6 coiled-coil region Leu_zip PF15294.6 gi|530548032|ref|YP_008428565.1| - 0.0015 18.1 22.7 0.0042 16.6 22.3 1.7 1 1 0 1 1 1 1 Leucine zipper Spc7 PF08317.11 gi|530548032|ref|YP_008428565.1| - 0.0015 17.5 19.4 0.0023 16.9 19.4 1.2 1 0 0 1 1 1 1 Spc7 kinetochore protein GOLGA2L5 PF15070.6 gi|530548032|ref|YP_008428565.1| - 0.0033 16.2 15.0 0.0046 15.7 15.0 1.1 1 0 0 1 1 1 1 Putative golgin subfamily A member 2-like protein 5 Cnn_1N PF07989.11 gi|530548032|ref|YP_008428565.1| - 0.0046 17.1 12.2 0.0046 17.1 12.2 3.0 1 1 2 3 3 3 2 Centrosomin N-terminal motif 1 Nup54 PF13874.6 gi|530548032|ref|YP_008428565.1| - 0.0066 16.6 14.6 0.0066 16.6 14.6 1.7 1 1 1 2 2 2 2 Nucleoporin complex subunit 54 TMF_DNA_bd PF12329.8 gi|530548032|ref|YP_008428565.1| - 0.0072 16.3 14.0 0.0072 16.3 14.0 2.5 1 1 1 2 2 2 1 TATA element modulatory factor 1 DNA binding TPR_MLP1_2 PF07926.12 gi|530548032|ref|YP_008428565.1| - 0.008 16.2 24.7 0.013 15.6 24.7 1.2 1 0 0 1 1 1 1 TPR/MLP1/MLP2-like protein DUF4407 PF14362.6 gi|530548032|ref|YP_008428565.1| - 0.0084 15.5 11.4 0.013 14.9 11.4 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4407) Corona_S2 PF01601.16 gi|530548032|ref|YP_008428565.1| - 0.0087 14.6 0.8 0.011 14.3 0.8 1.2 1 0 0 1 1 1 1 Coronavirus S2 glycoprotein Prefoldin_2 PF01920.20 gi|530548032|ref|YP_008428565.1| - 0.0087 16.0 21.4 0.25 11.3 4.5 2.5 2 0 0 2 2 2 2 Prefoldin subunit DUF2730 PF10805.8 gi|530548032|ref|YP_008428565.1| - 0.009 16.1 6.1 0.016 15.3 4.1 2.2 1 1 1 2 2 2 1 Protein of unknown function (DUF2730) FPP PF05911.11 gi|530548032|ref|YP_008428565.1| - 0.012 13.9 14.8 0.014 13.6 14.8 1.0 1 0 0 1 1 1 0 Filament-like plant protein, long coiled-coil Ax_dynein_light PF10211.9 gi|530548032|ref|YP_008428565.1| - 0.016 15.1 22.0 0.12 12.3 5.6 2.5 1 1 1 2 2 2 0 Axonemal dynein light chain Tropomyosin_1 PF12718.7 gi|530548032|ref|YP_008428565.1| - 0.018 15.2 10.1 0.018 15.2 10.1 2.1 1 1 1 2 2 2 0 Tropomyosin like PRKG1_interact PF15898.5 gi|530548032|ref|YP_008428565.1| - 0.02 15.8 23.4 0.15 12.9 1.3 3.3 1 1 2 3 3 3 0 cGMP-dependent protein kinase interacting domain Snapin_Pallidin PF14712.6 gi|530548032|ref|YP_008428565.1| - 0.024 15.0 10.3 0.024 15.0 10.3 2.0 1 1 1 2 2 2 0 Snapin/Pallidin Pox_A30L_A26L PF06086.12 gi|530548032|ref|YP_008428565.1| - 0.025 14.3 0.1 0.049 13.3 0.1 1.4 1 0 0 1 1 1 0 Orthopoxvirus A26L/A30L protein Shugoshin_N PF07558.11 gi|530548032|ref|YP_008428565.1| - 0.031 14.2 17.1 0.31 10.9 3.3 3.5 2 1 1 3 3 3 0 Shugoshin N-terminal coiled-coil region Occludin_ELL PF07303.13 gi|530548032|ref|YP_008428565.1| - 0.031 15.0 14.7 0.23 12.2 6.3 2.2 1 1 1 2 2 2 0 Occludin homology domain bZIP_2 PF07716.15 gi|530548032|ref|YP_008428565.1| - 0.033 14.3 29.1 0.048 13.7 7.2 4.3 2 2 2 4 4 4 0 Basic region leucine zipper YabA PF06156.13 gi|530548032|ref|YP_008428565.1| - 0.038 14.6 22.8 0.18 12.4 6.9 2.3 1 1 1 2 2 2 0 Initiation control protein YabA MscS_porin PF12795.7 gi|530548032|ref|YP_008428565.1| - 0.039 13.5 24.0 0.06 12.9 24.0 1.2 1 0 0 1 1 1 0 Mechanosensitive ion channel porin domain Csm1_N PF18504.1 gi|530548032|ref|YP_008428565.1| - 0.04 14.3 22.3 0.056 13.8 7.5 2.9 1 1 1 2 2 2 0 Csm1 N-terminal domain DUF3450 PF11932.8 gi|530548032|ref|YP_008428565.1| - 0.044 13.1 25.0 0.033 13.5 7.0 2.6 2 1 1 3 3 2 0 Protein of unknown function (DUF3450) DUF4515 PF14988.6 gi|530548032|ref|YP_008428565.1| - 0.047 13.5 28.9 0.26 11.1 11.0 2.8 1 1 2 3 3 3 0 Domain of unknown function (DUF4515) ADIP PF11559.8 gi|530548032|ref|YP_008428565.1| - 0.052 13.6 27.1 0.042 13.9 8.1 2.1 1 1 1 2 2 2 0 Afadin- and alpha -actinin-Binding AAA_32 PF13654.6 gi|530548032|ref|YP_008428565.1| - 0.053 12.3 10.4 0.064 12.0 10.4 1.1 1 0 0 1 1 1 0 AAA domain CorA PF01544.18 gi|530548032|ref|YP_008428565.1| - 0.054 12.8 3.7 0.081 12.2 3.7 1.3 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein LMBR1 PF04791.16 gi|530548032|ref|YP_008428565.1| - 0.056 12.4 6.5 0.083 11.8 6.5 1.2 1 0 0 1 1 1 0 LMBR1-like membrane protein TMF_TATA_bd PF12325.8 gi|530548032|ref|YP_008428565.1| - 0.065 13.5 20.6 0.22 11.8 6.5 2.3 1 1 1 2 2 2 0 TATA element modulatory factor 1 TATA binding Spc24 PF08286.11 gi|530548032|ref|YP_008428565.1| - 0.066 13.5 21.2 0.87 9.9 6.3 2.6 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 DUF3584 PF12128.8 gi|530548032|ref|YP_008428565.1| - 0.078 10.5 13.0 0.1 10.1 13.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) Cep57_MT_bd PF06657.13 gi|530548032|ref|YP_008428565.1| - 0.089 13.3 15.8 0.33 11.4 4.4 2.5 1 1 1 2 2 2 0 Centrosome microtubule-binding domain of Cep57 DUF4315 PF14193.6 gi|530548032|ref|YP_008428565.1| - 0.091 12.8 11.5 1.4 9.0 11.0 3.1 2 1 0 2 2 2 0 Domain of unknown function (DUF4315) V_ATPase_I PF01496.19 gi|530548032|ref|YP_008428565.1| - 0.099 10.5 10.1 0.012 13.6 6.2 1.5 2 0 0 2 2 1 0 V-type ATPase 116kDa subunit family Rho_Binding PF08912.11 gi|530548032|ref|YP_008428565.1| - 0.11 13.4 26.1 0.15 12.9 5.2 3.3 2 2 1 3 3 3 0 Rho Binding STAT_alpha PF01017.20 gi|530548032|ref|YP_008428565.1| - 0.13 12.1 13.6 0.39 10.6 4.1 2.1 2 0 0 2 2 2 0 STAT protein, all-alpha domain LIN37 PF15306.6 gi|530548032|ref|YP_008428565.1| - 0.17 12.1 8.3 0.25 11.6 8.3 1.2 1 0 0 1 1 1 0 LIN37 FlaC_arch PF05377.11 gi|530548032|ref|YP_008428565.1| - 0.18 12.2 14.2 1.1 9.7 4.8 3.8 2 2 2 4 4 4 0 Flagella accessory protein C (FlaC) Cep57_CLD_2 PF14197.6 gi|530548032|ref|YP_008428565.1| - 0.22 11.7 20.1 2.6e+02 1.8 19.0 2.6 1 1 0 1 1 1 0 Centrosome localisation domain of PPC89 Jnk-SapK_ap_N PF09744.9 gi|530548032|ref|YP_008428565.1| - 0.22 11.7 20.3 2.9 8.1 20.4 2.1 1 1 0 1 1 1 0 JNK_SAPK-associated protein-1 DUF4763 PF15960.5 gi|530548032|ref|YP_008428565.1| - 0.23 10.8 18.6 0.13 11.5 5.4 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4763) SHE3 PF17078.5 gi|530548032|ref|YP_008428565.1| - 0.25 11.0 20.4 0.58 9.8 20.3 1.6 1 1 0 1 1 1 0 SWI5-dependent HO expression protein 3 ATG16 PF08614.11 gi|530548032|ref|YP_008428565.1| - 0.28 11.4 24.3 2.1 8.5 8.8 1.8 1 1 1 2 2 2 0 Autophagy protein 16 (ATG16) CENP-H PF05837.12 gi|530548032|ref|YP_008428565.1| - 0.29 11.6 26.1 0.28 11.6 8.9 2.3 1 1 1 2 2 2 0 Centromere protein H (CENP-H) SKA2 PF16740.5 gi|530548032|ref|YP_008428565.1| - 0.29 10.9 17.1 1.6 8.5 6.4 2.3 1 1 1 2 2 2 0 Spindle and kinetochore-associated protein 2 Exonuc_VII_L PF02601.15 gi|530548032|ref|YP_008428565.1| - 0.34 10.4 7.7 0.43 10.1 7.7 1.2 1 0 0 1 1 1 0 Exonuclease VII, large subunit DUF1640 PF07798.11 gi|530548032|ref|YP_008428565.1| - 0.4 10.7 18.5 0.25 11.4 13.1 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1640) GrpE PF01025.19 gi|530548032|ref|YP_008428565.1| - 0.49 10.0 24.9 0.97 9.1 8.5 2.5 1 1 2 3 3 3 0 GrpE BLOC1_2 PF10046.9 gi|530548032|ref|YP_008428565.1| - 0.54 10.6 19.6 0.32 11.3 6.5 2.3 1 1 1 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 HMMR_N PF15905.5 gi|530548032|ref|YP_008428565.1| - 0.57 9.6 22.4 0.83 9.1 22.4 1.2 1 0 0 1 1 1 0 Hyaluronan mediated motility receptor N-terminal MAD PF05557.13 gi|530548032|ref|YP_008428565.1| - 0.59 8.4 25.3 0.041 12.3 6.8 2.0 1 1 1 2 2 2 0 Mitotic checkpoint protein AAA_13 PF13166.6 gi|530548032|ref|YP_008428565.1| - 0.59 8.7 20.5 0.032 12.9 9.1 2.0 1 1 1 2 2 2 0 AAA domain UPF0242 PF06785.11 gi|530548032|ref|YP_008428565.1| - 0.65 10.1 23.7 0.23 11.6 6.9 2.2 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0242) N-terminus TSC22 PF01166.18 gi|530548032|ref|YP_008428565.1| - 0.67 10.3 18.7 0.2 12.0 5.7 3.5 1 1 1 2 2 2 0 TSC-22/dip/bun family DUF3138 PF11336.8 gi|530548032|ref|YP_008428565.1| - 0.68 8.5 4.7 0.99 7.9 4.7 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3138) DUF4140 PF13600.6 gi|530548032|ref|YP_008428565.1| - 0.68 10.4 11.3 5.4 7.5 1.3 2.6 1 1 1 2 2 2 0 N-terminal domain of unknown function (DUF4140) Mod_r PF07200.13 gi|530548032|ref|YP_008428565.1| - 0.69 10.0 26.4 0.091 12.9 8.4 2.1 1 1 1 2 2 2 0 Modifier of rudimentary (Mod(r)) protein Atg14 PF10186.9 gi|530548032|ref|YP_008428565.1| - 0.7 8.9 21.2 1.7 7.6 21.3 1.5 1 1 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 GIT_CC PF16559.5 gi|530548032|ref|YP_008428565.1| - 0.73 9.8 24.0 0.19 11.6 5.9 3.6 1 1 3 4 4 4 0 GIT coiled-coil Rho guanine nucleotide exchange factor CENP-F_leu_zip PF10473.9 gi|530548032|ref|YP_008428565.1| - 0.74 9.8 23.9 16 5.5 23.9 2.2 1 1 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Mto2_bdg PF12808.7 gi|530548032|ref|YP_008428565.1| - 1 9.7 18.6 1.3 9.3 0.4 3.5 3 1 0 3 3 2 0 Micro-tubular organiser Mto1 C-term Mto2-binding region NRBF2 PF08961.10 gi|530548032|ref|YP_008428565.1| - 1.1 8.9 16.6 3.3 7.3 3.1 2.7 1 1 2 3 3 3 0 Nuclear receptor-binding factor 2, autophagy regulator FapA PF03961.13 gi|530548032|ref|YP_008428565.1| - 1.1 7.8 20.0 7.3 5.1 20.0 1.9 1 1 0 1 1 1 0 Flagellar Assembly Protein A DUF2205 PF10224.9 gi|530548032|ref|YP_008428565.1| - 1.2 9.2 17.9 1 9.4 1.4 3.4 1 1 1 3 3 3 0 Short coiled-coil protein DUF1759 PF03564.15 gi|530548032|ref|YP_008428565.1| - 1.3 8.9 9.7 13 5.7 9.6 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF1759) JIP_LZII PF16471.5 gi|530548032|ref|YP_008428565.1| - 1.4 9.2 19.4 1.1 9.5 6.3 2.8 2 1 0 2 2 2 0 JNK-interacting protein leucine zipper II GCN5L1 PF06320.13 gi|530548032|ref|YP_008428565.1| - 1.4 9.1 16.4 0.034 14.3 5.2 2.6 1 1 1 2 2 2 0 GCN5-like protein 1 (GCN5L1) SlyX PF04102.12 gi|530548032|ref|YP_008428565.1| - 1.5 9.5 17.0 2.9 8.6 4.2 3.3 1 1 3 4 4 3 0 SlyX Lectin_N PF03954.14 gi|530548032|ref|YP_008428565.1| - 1.5 8.5 14.7 0.14 11.9 3.9 2.2 1 1 1 2 2 2 0 Hepatic lectin, N-terminal domain HAUS-augmin3 PF14932.6 gi|530548032|ref|YP_008428565.1| - 1.6 8.2 23.1 2.9 7.4 23.0 1.4 1 1 0 1 1 1 0 HAUS augmin-like complex subunit 3 Rootletin PF15035.6 gi|530548032|ref|YP_008428565.1| - 1.6 8.7 21.4 0.16 11.9 6.4 2.1 1 1 1 2 2 2 0 Ciliary rootlet component, centrosome cohesion DUF1664 PF07889.12 gi|530548032|ref|YP_008428565.1| - 1.6 8.7 10.5 1.6 8.8 2.8 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) Sec20 PF03908.13 gi|530548032|ref|YP_008428565.1| - 1.8 8.6 7.8 2.9 7.9 1.8 2.4 2 0 0 2 2 2 0 Sec20 Uso1_p115_C PF04871.13 gi|530548032|ref|YP_008428565.1| - 2 8.8 29.6 2.2 8.7 9.3 2.1 1 1 1 2 2 2 0 Uso1 / p115 like vesicle tethering protein, C terminal region Sipho_Gp157 PF05565.11 gi|530548032|ref|YP_008428565.1| - 2 8.4 20.4 4.7 7.2 5.6 2.3 1 1 1 2 2 2 0 Siphovirus Gp157 SIKE PF05769.11 gi|530548032|ref|YP_008428565.1| - 2.1 8.3 23.4 0.52 10.2 2.1 3.6 1 1 2 3 3 3 0 SIKE family DUF724 PF05266.14 gi|530548032|ref|YP_008428565.1| - 2.6 7.8 19.7 3.6 7.4 5.9 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF724) TolA_bind_tri PF16331.5 gi|530548032|ref|YP_008428565.1| - 2.6 8.2 18.3 0.29 11.2 4.1 2.9 1 1 1 2 2 2 0 TolA binding protein trimerisation FlxA PF14282.6 gi|530548032|ref|YP_008428565.1| - 2.8 8.0 28.3 7.2 6.7 7.7 2.5 1 1 1 2 2 2 0 FlxA-like protein Wtap PF17098.5 gi|530548032|ref|YP_008428565.1| - 2.9 7.8 19.3 4.7 7.1 5.8 2.4 1 1 0 2 2 2 0 WTAP/Mum2p family TLE_N PF03920.15 gi|530548032|ref|YP_008428565.1| - 3 7.9 11.1 9.6 6.3 11.2 1.8 1 1 0 1 1 1 0 Groucho/TLE N-terminal Q-rich domain NYD-SP28_assoc PF14775.6 gi|530548032|ref|YP_008428565.1| - 3.2 7.9 24.9 4.1 7.6 0.8 4.2 2 1 2 4 4 4 0 Sperm tail C-terminal domain Sulfatase_C PF14707.6 gi|530548032|ref|YP_008428565.1| - 4.2 8.1 8.1 11 6.8 0.6 2.2 1 1 1 2 2 2 0 C-terminal region of aryl-sulfatase T3SSipB PF16535.5 gi|530548032|ref|YP_008428565.1| - 4.3 7.8 18.8 2.2 8.8 4.3 2.1 1 1 1 2 2 2 0 Type III cell invasion protein SipB DUF2207 PF09972.9 gi|530548032|ref|YP_008428565.1| - 4.3 6.0 9.6 9.7 4.8 9.2 1.8 1 1 0 1 1 1 0 Predicted membrane protein (DUF2207) WXG100 PF06013.12 gi|530548032|ref|YP_008428565.1| - 4.7 7.5 9.4 5.3 7.4 3.1 2.5 1 1 1 2 2 2 0 Proteins of 100 residues with WXG HAP1_N PF04849.13 gi|530548032|ref|YP_008428565.1| - 5 6.2 22.5 16 4.5 22.0 1.9 1 1 0 1 1 1 0 HAP1 N-terminal conserved region DUF948 PF06103.11 gi|530548032|ref|YP_008428565.1| - 5.1 7.4 12.6 22 5.4 3.4 3.4 2 1 1 3 3 3 0 Bacterial protein of unknown function (DUF948) Ca_chan_IQ PF08763.11 gi|530548032|ref|YP_008428565.1| - 5.1 7.4 6.5 1.6 9.0 0.7 2.6 1 1 2 3 3 2 0 Voltage gated calcium channel IQ domain Prefoldin PF02996.17 gi|530548032|ref|YP_008428565.1| - 5.4 7.0 19.8 1.4 8.9 4.9 3.1 1 1 2 3 3 3 0 Prefoldin subunit PikAIV_N PF18605.1 gi|530548032|ref|YP_008428565.1| - 5.6 6.6 12.4 5.3 6.7 0.5 3.4 3 0 0 3 3 3 0 Narbonolide/10-deoxymethynolide synthase PikA4 N-terminal domain PspA_IM30 PF04012.12 gi|530548032|ref|YP_008428565.1| - 5.8 6.4 24.1 8.7 5.9 24.1 1.2 1 0 0 1 1 1 0 PspA/IM30 family DUF2935 PF11155.8 gi|530548032|ref|YP_008428565.1| - 6.5 7.1 11.7 9 6.7 8.5 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF2935) HemX PF04375.14 gi|530548032|ref|YP_008428565.1| - 6.5 5.9 23.1 0.38 10.0 6.5 2.1 1 1 1 2 2 2 0 HemX, putative uroporphyrinogen-III C-methyltransferase MctB PF11382.8 gi|530548032|ref|YP_008428565.1| - 6.7 6.3 12.9 1.3e+03 -1.2 12.9 2.7 1 1 0 1 1 1 0 Copper transport outer membrane protein, MctB Sec34 PF04136.15 gi|530548032|ref|YP_008428565.1| - 8.5 6.3 16.0 9.8 6.1 3.0 2.1 1 1 1 2 2 2 0 Sec34-like family Prp19 PF08606.11 gi|530548032|ref|YP_008428565.1| - 8.9 6.4 9.7 0.68 10.0 3.2 2.3 1 1 2 3 3 3 0 Prp19/Pso4-like Fmp27_WPPW PF10359.9 gi|530548032|ref|YP_008428565.1| - 9.1 5.0 16.4 24 3.6 16.3 1.5 1 1 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain DUF5595 PF18077.1 gi|530548032|ref|YP_008428565.1| - 9.3 6.4 14.8 10 6.3 0.4 3.8 1 1 3 4 4 4 0 Domain of unknown function (DUF5595) AAA_16 PF13191.6 gi|530548033|ref|YP_008428566.1| - 4.3e-06 27.2 0.0 0.00037 20.9 0.0 2.2 2 0 0 2 2 2 1 AAA ATPase domain DUF87 PF01935.17 gi|530548033|ref|YP_008428566.1| - 1.4e-05 25.3 0.4 0.0025 17.9 0.0 2.3 2 0 0 2 2 2 1 Helicase HerA, central domain AAA_22 PF13401.6 gi|530548033|ref|YP_008428566.1| - 0.00011 22.5 0.0 0.013 15.7 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_10 PF12846.7 gi|530548033|ref|YP_008428566.1| - 0.00015 20.8 0.2 0.1 11.5 0.0 2.2 2 0 0 2 2 2 2 AAA-like domain AAA PF00004.29 gi|530548033|ref|YP_008428566.1| - 0.00029 21.3 0.1 0.023 15.1 0.0 2.3 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.6 gi|530548033|ref|YP_008428566.1| - 0.0015 18.8 0.0 0.0027 18.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain DUF815 PF05673.13 gi|530548033|ref|YP_008428566.1| - 0.0044 16.2 0.0 0.0087 15.2 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_18 PF13238.6 gi|530548033|ref|YP_008428566.1| - 0.0049 17.4 0.1 0.018 15.6 0.0 2.0 2 1 0 2 2 2 1 AAA domain TrwB_AAD_bind PF10412.9 gi|530548033|ref|YP_008428566.1| - 0.0053 15.7 0.0 0.011 14.6 0.0 1.5 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain ABC_tran PF00005.27 gi|530548033|ref|YP_008428566.1| - 0.0067 16.9 0.0 0.012 16.1 0.0 1.5 1 0 0 1 1 1 1 ABC transporter RuvB_N PF05496.12 gi|530548033|ref|YP_008428566.1| - 0.01 15.6 0.0 0.02 14.7 0.0 1.5 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain PhoH PF02562.16 gi|530548033|ref|YP_008428566.1| - 0.011 15.2 0.0 0.41 10.1 0.0 2.3 2 0 0 2 2 2 0 PhoH-like protein FtsK_SpoIIIE PF01580.18 gi|530548033|ref|YP_008428566.1| - 0.019 14.3 0.0 0.034 13.5 0.0 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family ResIII PF04851.15 gi|530548033|ref|YP_008428566.1| - 0.037 14.0 2.6 0.048 13.7 0.2 2.3 3 1 0 3 3 3 0 Type III restriction enzyme, res subunit Cytidylate_kin PF02224.18 gi|530548033|ref|YP_008428566.1| - 0.044 13.5 0.1 0.14 11.9 0.0 1.8 2 0 0 2 2 2 0 Cytidylate kinase NB-ARC PF00931.22 gi|530548033|ref|YP_008428566.1| - 0.048 12.9 0.0 0.09 11.9 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain PRK PF00485.18 gi|530548033|ref|YP_008428566.1| - 0.059 13.1 0.0 0.11 12.3 0.0 1.4 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA_33 PF13671.6 gi|530548033|ref|YP_008428566.1| - 0.073 13.2 0.0 0.16 12.1 0.0 1.6 1 0 0 1 1 1 0 AAA domain RNA_pol_Rpb4 PF03874.16 gi|530548033|ref|YP_008428566.1| - 0.079 13.3 0.2 1.1 9.7 0.0 2.3 2 0 0 2 2 2 0 RNA polymerase Rpb4 Rad17 PF03215.15 gi|530548033|ref|YP_008428566.1| - 0.084 12.8 0.1 1.5 8.7 0.0 2.7 3 0 0 3 3 3 0 Rad17 P-loop domain AAA_7 PF12775.7 gi|530548033|ref|YP_008428566.1| - 0.093 12.2 0.0 0.16 11.5 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region RNA_helicase PF00910.22 gi|530548033|ref|YP_008428566.1| - 0.12 12.8 0.1 0.56 10.6 0.0 2.2 2 0 0 2 2 2 0 RNA helicase AAA_23 PF13476.6 gi|530548033|ref|YP_008428566.1| - 0.56 10.7 4.3 1.5 9.3 4.3 2.1 1 1 0 1 1 1 0 AAA domain Thioredoxin_6 PF13848.6 gi|530548033|ref|YP_008428566.1| - 0.71 9.7 5.8 14 5.6 0.8 2.9 2 1 1 3 3 3 0 Thioredoxin-like domain Baculo_E56 PF04639.12 gi|530548034|ref|YP_008428567.1| - 0.13 11.5 0.0 0.18 11.0 0.0 1.1 1 0 0 1 1 1 0 Baculoviral E56 protein, specific to ODV envelope EMP24_GP25L PF01105.24 gi|530548038|ref|YP_008428571.1| - 0.039 13.9 0.1 0.076 13.0 0.1 1.5 1 0 0 1 1 1 0 emp24/gp25L/p24 family/GOLD DUF3906 PF13046.6 gi|530548039|ref|YP_008428572.1| - 0.13 12.4 3.0 0.37 10.9 3.0 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF3906) DUF3995 PF13160.6 gi|530548040|ref|YP_008428573.1| - 0.0056 17.0 0.2 0.0063 16.9 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3995) DUF872 PF05915.12 gi|530548040|ref|YP_008428573.1| - 0.16 12.1 2.9 0.22 11.7 2.9 1.3 1 0 0 1 1 1 0 Eukaryotic protein of unknown function (DUF872) Vps55 PF04133.14 gi|530548040|ref|YP_008428573.1| - 0.17 11.9 5.6 0.38 10.7 5.6 1.6 1 1 0 1 1 1 0 Vacuolar protein sorting 55 DUF1129 PF06570.11 gi|530548040|ref|YP_008428573.1| - 0.38 10.2 3.5 0.4 10.1 3.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1129) LapA_dom PF06305.11 gi|530548040|ref|YP_008428573.1| - 0.48 10.3 5.8 1.9 8.4 1.4 2.1 2 0 0 2 2 2 0 Lipopolysaccharide assembly protein A domain DUF2207 PF09972.9 gi|530548040|ref|YP_008428573.1| - 2.2 6.9 5.4 2.3 6.9 5.4 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) Tom6 PF17112.5 gi|530548040|ref|YP_008428573.1| - 4.4 6.9 6.7 4.3 6.9 0.3 2.3 2 0 0 2 2 2 0 Mitochondrial import receptor subunit Tom6, fungal PHD_like PF12910.7 gi|530548041|ref|YP_008428574.1| - 0.00027 21.0 0.9 0.12 12.4 0.0 3.0 3 1 0 3 3 3 2 Antitoxin of toxin-antitoxin, RelE / RelB, TA system HicB_lk_antitox PF15919.5 gi|530548041|ref|YP_008428574.1| - 0.0067 16.5 0.0 0.018 15.1 0.0 1.7 1 0 0 1 1 1 1 HicB_like antitoxin of bacterial toxin-antitoxin system DUF3500 PF12006.8 gi|530548041|ref|YP_008428574.1| - 0.14 11.6 0.6 0.44 10.0 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3500) HicA_toxin PF07927.12 gi|530548042|ref|YP_008428575.1| - 2e-07 31.0 0.7 2.7e-07 30.5 0.7 1.2 1 0 0 1 1 1 1 HicA toxin of bacterial toxin-antitoxin, IF3_C PF00707.22 gi|530548042|ref|YP_008428575.1| - 0.013 15.5 0.6 0.013 15.5 0.6 1.5 1 1 0 1 1 1 0 Translation initiation factor IF-3, C-terminal domain MAM33 PF02330.16 gi|530548042|ref|YP_008428575.1| - 0.073 13.0 0.3 0.078 12.9 0.3 1.2 1 0 0 1 1 1 0 Mitochondrial glycoprotein LPD30 PF18850.1 gi|530548042|ref|YP_008428575.1| - 0.084 12.6 0.0 0.14 12.0 0.0 1.4 1 1 0 1 1 1 0 Large polyvalent protein associated domain 30 MazE_antitoxin PF04014.18 gi|530548043|ref|YP_008428576.1| - 0.00017 21.4 1.0 0.012 15.5 0.1 2.7 2 1 0 2 2 2 2 Antidote-toxin recognition MazE, bacterial antitoxin YabA PF06156.13 gi|530548045|ref|YP_008428578.1| - 0.0016 19.0 1.9 0.0016 19.0 1.9 1.9 2 0 0 2 2 2 1 Initiation control protein YabA TSC22 PF01166.18 gi|530548045|ref|YP_008428578.1| - 0.0054 17.0 6.6 0.94 9.8 1.7 2.6 2 0 0 2 2 2 2 TSC-22/dip/bun family SlyX PF04102.12 gi|530548045|ref|YP_008428578.1| - 0.0092 16.6 1.8 0.022 15.4 1.8 1.6 1 0 0 1 1 1 1 SlyX ZapB PF06005.12 gi|530548045|ref|YP_008428578.1| - 0.022 15.2 6.3 0.022 15.2 6.3 2.2 3 0 0 3 3 2 0 Cell division protein ZapB PRKG1_interact PF15898.5 gi|530548045|ref|YP_008428578.1| - 0.023 15.6 6.9 0.023 15.6 6.9 1.9 2 0 0 2 2 2 0 cGMP-dependent protein kinase interacting domain RE_HaeIII PF09556.10 gi|530548045|ref|YP_008428578.1| - 0.048 12.7 1.0 0.14 11.2 0.1 1.8 1 1 1 2 2 2 0 HaeIII restriction endonuclease HTH_Tnp_1 PF01527.20 gi|530548045|ref|YP_008428578.1| - 0.052 13.9 1.4 1.9 8.9 0.0 2.7 2 0 0 2 2 2 0 Transposase FAM76 PF16046.5 gi|530548045|ref|YP_008428578.1| - 0.081 12.3 2.4 0.12 11.7 2.4 1.3 1 0 0 1 1 1 0 FAM76 protein NRBF2 PF08961.10 gi|530548045|ref|YP_008428578.1| - 0.14 11.8 5.0 0.51 9.9 4.9 1.9 1 1 0 1 1 1 0 Nuclear receptor-binding factor 2, autophagy regulator bZIP_1 PF00170.21 gi|530548045|ref|YP_008428578.1| - 0.45 10.6 9.6 1.1 9.4 9.6 1.6 1 0 0 1 1 1 0 bZIP transcription factor YebG PF07130.12 gi|530548045|ref|YP_008428578.1| - 0.68 9.8 6.5 0.13 12.2 0.5 2.6 2 1 0 2 2 2 0 YebG protein Ead_Ea22 PF13935.6 gi|530548045|ref|YP_008428578.1| - 2.3 8.9 8.1 10 6.8 8.5 2.1 1 1 0 1 1 1 0 Ead/Ea22-like protein DivIC PF04977.15 gi|530548045|ref|YP_008428578.1| - 6.6 6.6 13.2 3.8 7.4 8.9 2.7 2 1 1 3 3 3 0 Septum formation initiator APG6_N PF17675.1 gi|530548045|ref|YP_008428578.1| - 7.3 7.1 15.1 0.3 11.6 8.3 2.0 2 0 0 2 2 2 0 Apg6 coiled-coil region VGPC1_C PF16799.5 gi|530548045|ref|YP_008428578.1| - 8.2 6.5 10.1 1.3e+02 2.6 8.9 2.9 2 1 0 2 2 2 0 C-terminal membrane-localisation domain of ion-channel, VCN1 Histone_HNS PF00816.21 gi|530548045|ref|YP_008428578.1| - 9 7.2 7.5 26 5.7 3.3 2.6 2 0 0 2 2 2 0 H-NS histone family DUF4423 PF14394.6 gi|530548047|ref|YP_008428580.1| - 0.0006 19.6 0.0 0.00064 19.5 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) DUF2250 PF10007.9 gi|530548047|ref|YP_008428580.1| - 0.036 14.2 0.0 0.037 14.1 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) MarR_2 PF12802.7 gi|530548047|ref|YP_008428580.1| - 0.045 13.7 0.1 0.063 13.2 0.1 1.4 1 1 0 1 1 1 0 MarR family z-alpha PF02295.17 gi|530548047|ref|YP_008428580.1| - 0.067 13.3 0.0 0.085 12.9 0.0 1.1 1 0 0 1 1 1 0 Adenosine deaminase z-alpha domain DUF2087 PF09860.9 gi|530548047|ref|YP_008428580.1| - 0.1 12.8 0.1 0.17 12.0 0.1 1.5 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2087) HTH_47 PF16221.5 gi|530548047|ref|YP_008428580.1| - 0.15 11.7 0.0 0.16 11.5 0.0 1.1 1 0 0 1 1 1 0 winged helix-turn-helix TrmB PF01978.19 gi|530548047|ref|YP_008428580.1| - 0.17 11.8 0.0 0.19 11.6 0.0 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB EAP30 PF04157.16 gi|530548047|ref|YP_008428580.1| - 0.17 11.1 0.1 0.17 11.1 0.1 1.1 1 0 0 1 1 1 0 EAP30/Vps36 family MetOD2 PF18548.1 gi|530548048|ref|YP_008428581.1| - 0.12 12.5 0.0 0.19 11.9 0.0 1.2 1 0 0 1 1 1 0 Metanogen output domain 2 BtpA PF03437.15 gi|530548048|ref|YP_008428581.1| - 0.19 11.1 0.0 0.25 10.7 0.0 1.2 1 0 0 1 1 1 0 BtpA family HTH_43 PF09904.9 gi|530548050|ref|YP_008428583.1| - 0.0056 16.6 0.0 0.011 15.6 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn helix HTH_11 PF08279.12 gi|530548050|ref|YP_008428583.1| - 0.0079 16.1 0.0 0.013 15.4 0.0 1.4 1 0 0 1 1 1 1 HTH domain HTH_23 PF13384.6 gi|530548050|ref|YP_008428583.1| - 0.038 13.8 0.0 0.083 12.7 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain HTH_28 PF13518.6 gi|530548050|ref|YP_008428583.1| - 0.052 13.7 0.0 0.13 12.5 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain DUF3038 PF11237.8 gi|530548050|ref|YP_008428583.1| - 0.1 12.7 0.0 0.12 12.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3038) ScsC_N PF18312.1 gi|530548051|ref|YP_008428584.1| - 0.023 14.5 0.5 0.072 12.9 0.0 1.8 1 1 1 2 2 2 0 Copper resistance protein ScsC N-terminal domain YolD PF08863.10 gi|530548055|ref|YP_008428588.1| - 0.056 13.5 0.6 0.085 12.9 0.6 1.4 1 1 0 1 1 1 0 YolD-like protein Poly_export PF02563.16 gi|530548055|ref|YP_008428588.1| - 0.12 12.6 0.0 0.24 11.6 0.0 1.4 1 0 0 1 1 1 0 Polysaccharide biosynthesis/export protein Nup35_RRM_2 PF14605.6 gi|530548057|ref|YP_008428590.1| - 0.0091 16.0 0.1 0.015 15.3 0.1 1.3 1 0 0 1 1 1 1 Nup53/35/40-type RNA recognition motif DUF960 PF06124.11 gi|530548057|ref|YP_008428590.1| - 0.081 13.6 0.0 0.092 13.4 0.0 1.1 1 0 0 1 1 1 0 Staphylococcal protein of unknown function (DUF960) Phage_integrase PF00589.22 gi|530548059|ref|YP_008428592.1| - 2.3e-07 30.7 2.9 8e-06 25.8 0.1 2.1 1 1 1 2 2 2 2 Phage integrase family VESA1_N PF12785.7 gi|530548059|ref|YP_008428592.1| - 0.035 13.1 0.0 0.053 12.5 0.0 1.3 1 0 0 1 1 1 0 Variant erythrocyte surface antigen-1 PHD_like PF12910.7 gi|530548060|ref|YP_008428593.1| - 0.098 12.7 0.0 0.11 12.5 0.0 1.1 1 0 0 1 1 1 0 Antitoxin of toxin-antitoxin, RelE / RelB, TA system DDE_Tnp_IS66 PF03050.14 gi|530548062|ref|YP_008428595.1| - 0.0059 16.1 0.0 0.0065 16.0 0.0 1.1 1 0 0 1 1 1 1 Transposase IS66 family SBP_bac_6 PF13343.6 gi|530548064|ref|YP_008428597.1| - 1.8e-35 122.5 1.7 2.2e-35 122.3 1.7 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 gi|530548064|ref|YP_008428597.1| - 4.8e-26 92.2 1.4 6.3e-26 91.8 1.4 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|530548064|ref|YP_008428597.1| - 8.3e-20 72.0 5.3 1.2e-19 71.4 5.3 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 gi|530548064|ref|YP_008428597.1| - 1.7e-19 70.5 0.0 2.4e-19 70.0 0.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein ABC_tran PF00005.27 gi|530548065|ref|YP_008428598.1| - 7.5e-36 123.7 0.0 1.5e-35 122.7 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|530548065|ref|YP_008428598.1| - 5.7e-11 42.8 0.1 3.5e-05 23.8 0.1 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system Rad17 PF03215.15 gi|530548065|ref|YP_008428598.1| - 3e-05 24.0 0.0 5e-05 23.3 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain SMC_N PF02463.19 gi|530548065|ref|YP_008428598.1| - 0.0021 17.5 0.0 0.029 13.8 0.0 2.0 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain ATPase_2 PF01637.18 gi|530548065|ref|YP_008428598.1| - 0.009 15.9 0.0 0.015 15.2 0.0 1.3 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_22 PF13401.6 gi|530548065|ref|YP_008428598.1| - 0.013 15.8 0.4 0.038 14.3 0.4 1.8 1 1 0 1 1 1 0 AAA domain AAA PF00004.29 gi|530548065|ref|YP_008428598.1| - 0.022 15.2 0.7 0.064 13.7 0.7 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|530548065|ref|YP_008428598.1| - 0.024 15.0 0.1 0.05 14.0 0.1 1.6 1 1 0 1 1 1 0 AAA ATPase domain SbcCD_C PF13558.6 gi|530548065|ref|YP_008428598.1| - 0.22 11.7 0.1 2.2 8.6 0.1 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit BPD_transp_1 PF00528.22 gi|530548066|ref|YP_008428599.1| - 5.9e-23 81.6 47.0 4e-16 59.3 17.0 3.9 3 1 1 4 4 4 2 Binding-protein-dependent transport system inner membrane component Glyco_hydro_130 PF04041.13 gi|530548067|ref|YP_008428600.1| - 4.8e-106 354.3 0.9 6e-106 354.0 0.9 1.0 1 0 0 1 1 1 1 beta-1,4-mannooligosaccharide phosphorylase Glyco_hydro_32N PF00251.20 gi|530548067|ref|YP_008428600.1| - 3.9e-07 29.9 0.0 0.00032 20.4 0.0 2.6 1 1 1 2 2 2 2 Glycosyl hydrolases family 32 N-terminal domain Glyco_hydro_43 PF04616.14 gi|530548067|ref|YP_008428600.1| - 1.2e-06 28.1 0.1 0.00035 20.0 0.0 2.6 2 1 1 3 3 3 2 Glycosyl hydrolases family 43 BNR_2 PF13088.6 gi|530548067|ref|YP_008428600.1| - 0.011 15.0 0.0 0.017 14.5 0.0 1.2 1 0 0 1 1 1 0 BNR repeat-like domain Archaeal_AmoA PF12942.7 gi|530548067|ref|YP_008428600.1| - 0.055 13.2 0.0 0.084 12.6 0.0 1.3 1 0 0 1 1 1 0 Archaeal ammonia monooxygenase subunit A (AmoA) GDE_N_bis PF14742.6 gi|530548068|ref|YP_008428601.1| - 5.2e-18 65.3 0.1 1.1e-17 64.2 0.1 1.5 1 1 0 1 1 1 1 N-terminal domain of (some) glycogen debranching enzymes GDE_C PF06202.14 gi|530548068|ref|YP_008428601.1| - 5.9e-18 65.0 0.0 2.6e-17 62.8 0.0 1.9 1 1 0 1 1 1 1 Amylo-alpha-1,6-glucosidase Glyco_hydro_100 PF12899.7 gi|530548068|ref|YP_008428601.1| - 2.2e-06 26.6 0.0 0.00015 20.6 0.0 2.5 3 0 0 3 3 3 2 Alkaline and neutral invertase Bac_rhamnosid6H PF17389.2 gi|530548068|ref|YP_008428601.1| - 0.00052 19.4 0.0 0.00083 18.7 0.0 1.3 1 0 0 1 1 1 1 Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain DUF1154 PF06631.11 gi|530548068|ref|YP_008428601.1| - 1 9.4 3.7 17 5.6 2.6 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1154) Fucose_iso_C PF02952.17 gi|530548069|ref|YP_008428602.1| - 1.6e-12 47.4 0.0 2.4e-12 46.8 0.0 1.3 1 0 0 1 1 1 1 L-fucose isomerase, C-terminal domain ABC_tran PF00005.27 gi|530548070|ref|YP_008428603.1| - 2.3e-29 102.7 0.0 3.3e-29 102.1 0.0 1.3 1 0 0 1 1 1 1 ABC transporter OB_MalK PF17912.1 gi|530548070|ref|YP_008428603.1| - 2.7e-17 63.4 0.0 8.7e-17 61.7 0.0 2.0 1 0 0 1 1 1 1 MalK OB fold domain TOBE_2 PF08402.10 gi|530548070|ref|YP_008428603.1| - 3.7e-07 30.2 0.4 1e-06 28.8 0.4 1.8 1 0 0 1 1 1 1 TOBE domain CysA_C_terminal PF17850.1 gi|530548070|ref|YP_008428603.1| - 4.5e-05 23.9 0.1 0.00021 21.8 0.1 2.2 1 0 0 1 1 1 1 CysA C-terminal regulatory domain TOBE PF03459.17 gi|530548070|ref|YP_008428603.1| - 0.00027 21.1 0.6 0.00027 21.1 0.6 2.0 2 0 0 2 2 2 1 TOBE domain SMC_N PF02463.19 gi|530548070|ref|YP_008428603.1| - 0.0029 17.1 0.0 0.012 15.0 0.0 2.0 3 0 0 3 3 3 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|530548070|ref|YP_008428603.1| - 0.0049 16.7 0.0 0.021 14.7 0.0 1.8 1 1 1 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system Rad17 PF03215.15 gi|530548070|ref|YP_008428603.1| - 0.012 15.5 0.0 0.018 14.9 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain Syntaxin PF00804.25 gi|530548070|ref|YP_008428603.1| - 0.028 14.1 0.6 0.049 13.3 0.6 1.4 1 1 0 1 1 1 0 Syntaxin Regulator_TrmB PF11495.8 gi|530548071|ref|YP_008428604.1| - 1.9e-59 200.7 0.6 2.7e-59 200.2 0.6 1.2 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB TrmB PF01978.19 gi|530548071|ref|YP_008428604.1| - 2.9e-22 78.3 0.2 7e-22 77.1 0.0 1.7 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_9 PF08221.11 gi|530548071|ref|YP_008428604.1| - 0.036 14.2 0.0 0.33 11.1 0.0 2.2 2 0 0 2 2 2 0 RNA polymerase III subunit RPC82 helix-turn-helix domain Rrf2 PF02082.20 gi|530548071|ref|YP_008428604.1| - 0.12 12.8 0.0 0.4 11.1 0.0 1.9 2 0 0 2 2 2 0 Transcriptional regulator Glycos_transf_1 PF00534.20 gi|530548072|ref|YP_008428605.1| - 3.9e-27 94.9 0.5 7.5e-27 93.9 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|530548072|ref|YP_008428605.1| - 1.8e-15 57.6 0.0 3.8e-15 56.5 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|530548072|ref|YP_008428605.1| - 2.7e-09 37.3 0.0 9.6e-09 35.5 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferases group 1 BPD_transp_1 PF00528.22 gi|530548073|ref|YP_008428606.1| - 9.6e-15 54.8 29.7 2.2e-13 50.4 29.7 2.2 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|530548074|ref|YP_008428607.1| - 5.6e-22 78.4 16.4 5.6e-22 78.4 16.4 2.0 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SUa-2TM PF18179.1 gi|530548074|ref|YP_008428607.1| - 0.16 11.3 0.1 0.16 11.3 0.1 1.7 2 0 0 2 2 2 0 SMODS- and Ubiquitin system-associated 2TM effector domain SBP_bac_1 PF01547.25 gi|530548075|ref|YP_008428608.1| - 2.5e-51 175.5 9.3 2.8e-51 175.4 8.6 1.4 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 gi|530548075|ref|YP_008428608.1| - 1.7e-34 119.9 1.3 2.3e-34 119.5 1.3 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein Polyoma_coat PF00718.20 gi|530548075|ref|YP_008428608.1| - 0.0018 17.6 0.0 0.0028 17.0 0.0 1.2 1 0 0 1 1 1 1 Polyomavirus coat protein YjbE PF11106.8 gi|530548075|ref|YP_008428608.1| - 0.091 13.0 2.2 0.15 12.3 2.2 1.3 1 0 0 1 1 1 0 Exopolysaccharide production protein YjbE PUA_2 PF14306.6 gi|530548075|ref|YP_008428608.1| - 0.15 11.8 0.0 0.31 10.7 0.0 1.5 1 0 0 1 1 1 0 PUA-like domain PfkB PF00294.24 gi|530548076|ref|YP_008428609.1| - 8.2e-59 199.4 0.0 1.1e-58 198.9 0.0 1.1 1 0 0 1 1 1 1 pfkB family carbohydrate kinase P53_tetramer PF07710.11 gi|530548076|ref|YP_008428609.1| - 0.026 13.9 0.6 0.054 12.8 0.6 1.5 1 0 0 1 1 1 0 P53 tetramerisation motif DUF2700 PF10912.8 gi|530548077|ref|YP_008428610.1| - 0.00062 19.8 0.6 0.0007 19.7 0.6 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2700) Tmemb_161AB PF10268.9 gi|530548077|ref|YP_008428610.1| - 0.098 11.3 1.0 0.091 11.4 1.0 1.1 1 0 0 1 1 1 0 Predicted transmembrane protein 161AB RseC_MucC PF04246.12 gi|530548077|ref|YP_008428610.1| - 6.2 6.8 7.2 0.79 9.7 2.1 1.8 1 1 1 2 2 2 0 Positive regulator of sigma(E), RseC/MucC PALP PF00291.25 gi|530548078|ref|YP_008428611.1| - 4.3e-47 160.9 0.0 3.1e-46 158.1 0.0 1.8 1 1 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Glucosamine_iso PF01182.20 gi|530548078|ref|YP_008428611.1| - 0.029 14.2 0.0 0.04 13.8 0.0 1.2 1 0 0 1 1 1 0 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase DUF2605 PF10792.9 gi|530548078|ref|YP_008428611.1| - 0.079 12.9 0.0 0.17 11.8 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2605) Frigida PF07899.11 gi|530548079|ref|YP_008428612.1| - 0.056 12.7 0.0 0.056 12.7 0.0 1.0 1 0 0 1 1 1 0 Frigida-like protein ThiI PF02568.14 gi|530548080|ref|YP_008428613.1| - 6.2e-58 195.6 0.0 7.2e-58 195.4 0.0 1.0 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) QueC PF06508.13 gi|530548080|ref|YP_008428613.1| - 7.8e-06 25.5 0.0 0.00057 19.4 0.0 2.3 1 1 0 1 1 1 1 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.16 gi|530548080|ref|YP_008428613.1| - 0.00047 19.1 0.0 0.0016 17.3 0.0 1.9 1 1 1 2 2 2 1 tRNA methyl transferase CoA_binding_2 PF13380.6 gi|530548080|ref|YP_008428613.1| - 0.019 15.5 0.0 0.03 14.8 0.0 1.3 1 0 0 1 1 1 0 CoA binding domain DUF998 PF06197.13 gi|530548081|ref|YP_008428614.1| - 2.6e-17 63.0 5.3 3.2e-17 62.7 5.3 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF998) MerC PF03203.14 gi|530548081|ref|YP_008428614.1| - 0.029 14.8 8.1 0.057 13.9 2.0 2.5 1 1 1 2 2 2 0 MerC mercury resistance protein 7TMR-DISM_7TM PF07695.11 gi|530548081|ref|YP_008428614.1| - 0.11 12.4 14.8 0.27 11.1 14.6 1.7 1 1 0 1 1 1 0 7TM diverse intracellular signalling DUF4282 PF14110.6 gi|530548081|ref|YP_008428614.1| - 9.7 7.0 12.8 2.4 8.9 5.4 2.5 1 1 1 2 2 2 0 Domain of unknown function (DUF4282) ThiI PF02568.14 gi|530548082|ref|YP_008428615.1| - 1e-64 217.8 0.0 1.6e-64 217.2 0.0 1.3 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) THUMP PF02926.17 gi|530548082|ref|YP_008428615.1| - 1.6e-25 89.9 5.7 3e-25 89.0 5.7 1.5 1 0 0 1 1 1 1 THUMP domain QueC PF06508.13 gi|530548082|ref|YP_008428615.1| - 3.8e-08 33.1 0.0 3.4e-06 26.7 0.0 2.4 1 1 0 1 1 1 1 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.16 gi|530548082|ref|YP_008428615.1| - 2.3e-05 23.4 0.0 0.0001 21.3 0.0 2.0 2 1 0 2 2 2 1 tRNA methyl transferase PAPS_reduct PF01507.19 gi|530548082|ref|YP_008428615.1| - 9.9e-05 22.5 0.0 0.00021 21.4 0.0 1.5 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family PrpR_N PF06506.11 gi|530548082|ref|YP_008428615.1| - 0.036 13.6 0.1 0.088 12.4 0.1 1.6 1 0 0 1 1 1 0 Propionate catabolism activator ATP_bind_3 PF01171.20 gi|530548082|ref|YP_008428615.1| - 0.1 12.3 0.0 2.3 8.0 0.0 2.2 2 0 0 2 2 2 0 PP-loop family Nitroreductase PF00881.24 gi|530548083|ref|YP_008428616.1| - 5.4e-31 107.9 0.0 6.3e-31 107.7 0.0 1.1 1 0 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.6 gi|530548083|ref|YP_008428616.1| - 3.7e-14 52.8 1.3 8.8e-07 28.7 0.0 2.8 2 1 0 2 2 2 2 Putative TM nitroreductase Ribosomal_S2 PF00318.20 gi|530548084|ref|YP_008428617.1| - 1.2e-27 96.6 0.1 4.7e-14 52.1 0.3 2.0 1 1 1 2 2 2 2 Ribosomal protein S2 Enolase_N PF03952.16 gi|530548085|ref|YP_008428618.1| - 1.4e-23 83.5 0.1 2.9e-22 79.3 0.1 2.3 1 1 0 1 1 1 1 Enolase, N-terminal domain Enolase_C PF00113.22 gi|530548085|ref|YP_008428618.1| - 5.2e-07 29.2 0.1 1.7e-06 27.5 0.0 1.7 2 0 0 2 2 2 1 Enolase, C-terminal TIM barrel domain RNA_pol_Rpb6 PF01192.22 gi|530548086|ref|YP_008428619.1| - 2.4e-11 43.4 0.1 2.7e-11 43.2 0.1 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb6 RNA_pol_N PF01194.17 gi|530548087|ref|YP_008428620.1| - 1.9e-31 108.1 0.8 2.1e-31 108.0 0.8 1.0 1 0 0 1 1 1 1 RNA polymerases N / 8 kDa subunit Chordopox_RPO7 PF05864.12 gi|530548087|ref|YP_008428620.1| - 0.0073 16.5 0.2 0.01 16.1 0.2 1.3 1 0 0 1 1 1 1 Chordopoxvirus DNA-directed RNA polymerase 7 kDa polypeptide (RPO7) Ribosomal_S9 PF00380.19 gi|530548088|ref|YP_008428621.1| - 3.4e-30 105.0 0.7 3.9e-30 104.9 0.7 1.0 1 0 0 1 1 1 1 Ribosomal protein S9/S16 Ribosomal_L13 PF00572.18 gi|530548089|ref|YP_008428622.1| - 3e-13 50.1 0.3 5.2e-11 42.9 0.3 2.3 1 1 0 1 1 1 1 Ribosomal protein L13 Ribosomal_L18 PF17135.4 gi|530548090|ref|YP_008428623.1| - 6.3e-15 55.0 0.0 7.5e-15 54.8 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein 60S L18 and 50S L18e Ribosomal_L27A PF00828.19 gi|530548090|ref|YP_008428623.1| - 1.1e-08 35.8 0.7 3e-08 34.4 0.7 1.8 1 1 0 1 1 1 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A RNA_pol_A_bac PF01000.26 gi|530548091|ref|YP_008428624.1| - 4.6e-28 97.8 0.0 1.1e-27 96.6 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb3/RpoA insert domain RNA_pol_L PF01193.24 gi|530548091|ref|YP_008428624.1| - 2.5e-18 65.3 0.0 3.7e-18 64.7 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Ribosomal_S11 PF00411.19 gi|530548092|ref|YP_008428625.1| - 7.6e-49 164.7 1.6 1e-48 164.3 1.6 1.2 1 0 0 1 1 1 1 Ribosomal protein S11 S4 PF01479.25 gi|530547450|ref|YP_008428626.1| - 8.9e-16 57.3 0.1 8.9e-16 57.3 0.1 2.2 2 0 0 2 2 2 1 S4 domain TruB_N PF01509.18 gi|530548093|ref|YP_008428627.1| - 2.6e-26 92.8 1.3 5.6e-16 59.2 0.1 3.1 1 1 1 2 2 2 2 TruB family pseudouridylate synthase (N terminal domain) TruB_C_2 PF16198.5 gi|530548093|ref|YP_008428627.1| - 1.2e-24 86.2 0.0 2.7e-24 85.1 0.0 1.6 1 0 0 1 1 1 1 tRNA pseudouridylate synthase B C-terminal domain PUA PF01472.20 gi|530548093|ref|YP_008428627.1| - 7.8e-21 73.8 0.3 1.7e-20 72.7 0.3 1.6 1 0 0 1 1 1 1 PUA domain DKCLD PF08068.12 gi|530548093|ref|YP_008428627.1| - 1.7e-17 63.2 0.0 4.6e-17 61.8 0.0 1.7 1 0 0 1 1 1 1 DKCLD (NUC011) domain UPF0113 PF03657.13 gi|530548093|ref|YP_008428627.1| - 8.7e-05 22.7 0.1 0.0003 21.0 0.0 1.9 2 0 0 2 2 2 1 UPF0113 PUA domain SIR2_2 PF13289.6 gi|530548093|ref|YP_008428627.1| - 0.16 12.1 0.0 0.38 10.9 0.0 1.6 2 0 0 2 2 2 0 SIR2-like domain Pyr_redox_2 PF07992.14 gi|530548094|ref|YP_008428628.1| - 4.5e-35 121.3 0.0 5.4e-35 121.1 0.0 1.0 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|530548094|ref|YP_008428628.1| - 5.1e-14 52.6 1.7 8.7e-09 35.8 0.0 3.4 3 1 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|530548094|ref|YP_008428628.1| - 3.4e-11 43.0 0.1 6.1e-09 35.6 0.0 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|530548094|ref|YP_008428628.1| - 3.3e-09 36.3 0.9 3.1e-07 29.8 0.5 2.5 2 1 0 2 2 2 1 Glucose inhibited division protein A 3HCDH_N PF02737.18 gi|530548094|ref|YP_008428628.1| - 1.2e-06 28.5 0.1 0.0051 16.7 0.3 2.3 2 0 0 2 2 2 2 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DAO PF01266.24 gi|530548094|ref|YP_008428628.1| - 1.2e-06 28.3 4.8 8.4e-05 22.3 1.1 2.9 2 1 1 3 3 3 1 FAD dependent oxidoreductase AlaDh_PNT_C PF01262.21 gi|530548094|ref|YP_008428628.1| - 1.6e-06 27.6 0.0 0.0017 17.7 0.4 2.2 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_8 PF13450.6 gi|530548094|ref|YP_008428628.1| - 2.3e-06 27.7 2.6 0.00071 19.8 0.4 2.3 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.24 gi|530548094|ref|YP_008428628.1| - 7.6e-06 25.3 1.1 7.6e-06 25.3 1.1 1.6 2 0 0 2 2 2 1 FAD binding domain Thi4 PF01946.17 gi|530548094|ref|YP_008428628.1| - 4.1e-05 22.9 0.3 0.00012 21.4 0.3 1.8 2 0 0 2 2 2 1 Thi4 family FAD_oxidored PF12831.7 gi|530548094|ref|YP_008428628.1| - 4.8e-05 22.9 2.1 0.00032 20.2 1.4 2.2 2 1 0 2 2 2 1 FAD dependent oxidoreductase NAD_binding_7 PF13241.6 gi|530548094|ref|YP_008428628.1| - 5.6e-05 23.5 0.0 0.0022 18.4 0.1 2.2 2 0 0 2 2 2 1 Putative NAD(P)-binding F420_oxidored PF03807.17 gi|530548094|ref|YP_008428628.1| - 0.00067 20.2 0.1 0.83 10.3 0.0 2.7 3 0 0 3 3 2 2 NADP oxidoreductase coenzyme F420-dependent Lycopene_cycl PF05834.12 gi|530548094|ref|YP_008428628.1| - 0.0015 17.7 0.3 0.023 13.8 0.3 2.4 2 1 0 2 2 2 1 Lycopene cyclase protein UDPG_MGDP_dh_N PF03721.14 gi|530548094|ref|YP_008428628.1| - 0.0024 17.5 0.2 0.93 9.0 0.2 2.2 2 0 0 2 2 2 2 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain HI0933_like PF03486.14 gi|530548094|ref|YP_008428628.1| - 0.0024 16.6 1.5 0.033 12.9 0.3 2.7 3 1 0 3 3 3 1 HI0933-like protein ApbA PF02558.16 gi|530548094|ref|YP_008428628.1| - 0.027 14.1 0.4 4.1 7.0 0.2 2.3 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA 2-Hacid_dh_C PF02826.19 gi|530548094|ref|YP_008428628.1| - 0.031 13.6 0.0 1.7 7.9 0.1 2.2 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|530548094|ref|YP_008428628.1| - 0.032 14.5 0.8 1.4 9.2 0.0 2.3 2 0 0 2 2 2 0 Saccharopine dehydrogenase NADP binding domain FAD_binding_3 PF01494.19 gi|530548094|ref|YP_008428628.1| - 0.049 12.9 0.0 0.18 11.0 0.0 1.8 2 0 0 2 2 2 0 FAD binding domain NAD_binding_9 PF13454.6 gi|530548094|ref|YP_008428628.1| - 0.053 13.5 0.0 0.78 9.7 0.1 2.5 3 0 0 3 3 3 0 FAD-NAD(P)-binding NAD_binding_2 PF03446.15 gi|530548094|ref|YP_008428628.1| - 0.086 13.0 0.0 1.3 9.2 0.0 2.2 2 0 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase Shikimate_DH PF01488.20 gi|530548094|ref|YP_008428628.1| - 0.11 12.5 0.0 11 6.0 0.0 2.3 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase XdhC_C PF13478.6 gi|530548094|ref|YP_008428628.1| - 0.17 12.4 0.1 20 5.7 0.0 2.3 2 1 0 2 2 2 0 XdhC Rossmann domain NTP_transf_9 PF04248.12 gi|530548095|ref|YP_008428629.1| - 8.2e-33 112.2 0.5 9.5e-33 112.0 0.5 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF427) Ribosomal_L14e PF01929.17 gi|530548096|ref|YP_008428630.1| - 6.9e-05 23.3 0.0 0.0001 22.8 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L14 KOW PF00467.29 gi|530548096|ref|YP_008428630.1| - 0.00041 20.2 4.5 0.00072 19.4 4.5 1.4 1 0 0 1 1 1 1 KOW motif XisI PF08869.11 gi|530548096|ref|YP_008428630.1| - 0.062 13.6 0.0 0.069 13.5 0.0 1.1 1 0 0 1 1 1 0 XisI protein Cytidylate_kin2 PF13189.6 gi|530548097|ref|YP_008428631.1| - 1.8e-28 99.9 0.6 1.1e-26 94.0 0.6 2.0 1 1 0 1 1 1 1 Cytidylate kinase-like family AAA_18 PF13238.6 gi|530548097|ref|YP_008428631.1| - 6.7e-16 59.0 0.1 8.6e-16 58.7 0.1 1.2 1 0 0 1 1 1 1 AAA domain Cytidylate_kin PF02224.18 gi|530548097|ref|YP_008428631.1| - 8.4e-16 58.3 3.5 1.2e-09 38.2 1.1 2.1 1 1 1 2 2 2 2 Cytidylate kinase AAA_17 PF13207.6 gi|530548097|ref|YP_008428631.1| - 4.8e-14 52.9 0.1 9.4e-14 52.0 0.1 1.6 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|530548097|ref|YP_008428631.1| - 2.9e-05 24.3 0.5 0.0022 18.2 0.5 2.1 1 1 0 1 1 1 1 AAA domain dNK PF01712.19 gi|530548097|ref|YP_008428631.1| - 0.00015 21.7 1.1 0.071 13.0 0.0 2.8 1 1 1 2 2 2 2 Deoxynucleoside kinase CoaE PF01121.20 gi|530548097|ref|YP_008428631.1| - 0.00015 21.5 1.0 0.36 10.5 0.5 2.1 1 1 1 2 2 2 2 Dephospho-CoA kinase ADK PF00406.22 gi|530548097|ref|YP_008428631.1| - 0.00024 21.2 0.1 0.00035 20.7 0.1 1.6 1 1 0 1 1 1 1 Adenylate kinase PRK PF00485.18 gi|530548097|ref|YP_008428631.1| - 0.00077 19.2 0.2 0.086 12.6 0.0 2.1 1 1 1 2 2 2 1 Phosphoribulokinase / Uridine kinase family AAA_28 PF13521.6 gi|530548097|ref|YP_008428631.1| - 0.0015 18.8 0.1 0.0064 16.8 0.0 1.9 2 0 0 2 2 2 1 AAA domain SKI PF01202.22 gi|530548097|ref|YP_008428631.1| - 0.0092 16.1 0.5 0.041 14.0 0.5 1.9 1 1 0 1 1 1 1 Shikimate kinase NB-ARC PF00931.22 gi|530548097|ref|YP_008428631.1| - 0.018 14.2 0.0 0.025 13.8 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain SinI PF08671.10 gi|530548097|ref|YP_008428631.1| - 0.025 14.4 0.7 1 9.2 0.1 2.4 2 0 0 2 2 2 0 Anti-repressor SinI AAA_22 PF13401.6 gi|530548097|ref|YP_008428631.1| - 0.07 13.4 0.1 0.087 13.1 0.1 1.3 1 1 0 1 1 1 0 AAA domain Thymidylate_kin PF02223.17 gi|530548097|ref|YP_008428631.1| - 0.081 12.6 0.2 7.2 6.2 0.0 2.3 2 1 0 2 2 2 0 Thymidylate kinase DHC PF09626.10 gi|530548097|ref|YP_008428631.1| - 0.14 13.0 0.1 0.41 11.5 0.1 1.7 1 1 0 1 1 1 0 Dihaem cytochrome c AAA_16 PF13191.6 gi|530548097|ref|YP_008428631.1| - 0.17 12.2 0.0 0.21 11.9 0.0 1.2 1 0 0 1 1 1 0 AAA ATPase domain Ribosomal_L34e PF01199.18 gi|530548098|ref|YP_008428632.1| - 4.2e-23 81.5 3.8 4.9e-23 81.3 3.8 1.0 1 0 0 1 1 1 1 Ribosomal protein L34e DZR PF12773.7 gi|530548098|ref|YP_008428632.1| - 0.0018 18.2 0.3 0.0025 17.8 0.3 1.2 1 0 0 1 1 1 1 Double zinc ribbon Sgf11 PF08209.11 gi|530548098|ref|YP_008428632.1| - 0.029 13.9 1.3 3 7.5 0.1 2.4 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) EMC3_TMCO1 PF01956.16 gi|530548099|ref|YP_008428633.1| - 1.7e-28 99.5 7.9 1.9e-28 99.4 7.9 1.0 1 0 0 1 1 1 1 Integral membrane protein EMC3/TMCO1-like 60KD_IMP PF02096.20 gi|530548099|ref|YP_008428633.1| - 1.5e-07 31.5 2.9 2.2e-07 31.0 2.9 1.2 1 0 0 1 1 1 1 60Kd inner membrane protein DUF4199 PF13858.6 gi|530548099|ref|YP_008428633.1| - 0.0013 19.2 1.0 0.0085 16.5 0.8 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF4199) DUF2208 PF09973.9 gi|530548099|ref|YP_008428633.1| - 0.048 13.3 4.3 0.069 12.8 3.8 1.5 1 1 0 1 1 1 0 Predicted membrane protein (DUF2208) DIOX_N PF14226.6 gi|530548099|ref|YP_008428633.1| - 0.065 14.0 1.1 0.11 13.2 1.1 1.3 1 0 0 1 1 1 0 non-haem dioxygenase in morphine synthesis N-terminal P5-ATPase PF12409.8 gi|530548099|ref|YP_008428633.1| - 0.15 12.2 3.3 0.42 10.7 0.6 2.3 2 1 0 2 2 2 0 P5-type ATPase cation transporter S_4TM PF18159.1 gi|530548099|ref|YP_008428633.1| - 0.34 10.2 4.7 0.2 10.9 0.5 2.1 2 1 0 2 2 2 0 SMODS-associating 4TM effector domain Swi5 PF07061.11 gi|530548099|ref|YP_008428633.1| - 0.67 10.1 7.3 0.96 9.6 7.3 1.2 1 0 0 1 1 1 0 Swi5 OmpH PF03938.14 gi|530548099|ref|YP_008428633.1| - 1.2 9.5 12.8 1.7 8.9 12.8 1.1 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) AAA_17 PF13207.6 gi|530548100|ref|YP_008428634.1| - 3.4e-34 118.2 0.2 5.3e-34 117.6 0.2 1.3 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|530548100|ref|YP_008428634.1| - 9.9e-10 39.1 0.3 3.2e-09 37.4 0.1 1.8 1 1 1 2 2 2 1 AAA domain AAA_5 PF07728.14 gi|530548100|ref|YP_008428634.1| - 0.00034 20.6 1.2 0.00067 19.7 0.1 1.9 1 1 1 2 2 2 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 gi|530548100|ref|YP_008428634.1| - 0.00086 19.7 0.3 0.0019 18.6 0.3 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|530548100|ref|YP_008428634.1| - 0.0021 18.5 0.0 0.0081 16.6 0.0 2.0 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) dNK PF01712.19 gi|530548100|ref|YP_008428634.1| - 0.0024 17.8 0.1 0.024 14.5 0.0 2.0 2 0 0 2 2 2 1 Deoxynucleoside kinase NB-ARC PF00931.22 gi|530548100|ref|YP_008428634.1| - 0.0028 16.9 0.0 0.0051 16.0 0.0 1.4 1 0 0 1 1 1 1 NB-ARC domain KTI12 PF08433.10 gi|530548100|ref|YP_008428634.1| - 0.0035 16.8 0.1 0.0068 15.9 0.0 1.3 1 1 0 1 1 1 1 Chromatin associated protein KTI12 AAA_28 PF13521.6 gi|530548100|ref|YP_008428634.1| - 0.0038 17.5 0.2 0.0058 16.9 0.2 1.6 1 1 0 1 1 1 1 AAA domain AAA_14 PF13173.6 gi|530548100|ref|YP_008428634.1| - 0.0059 16.6 0.4 0.021 14.8 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|530548100|ref|YP_008428634.1| - 0.012 15.8 2.9 0.088 13.1 0.2 2.2 1 1 1 2 2 2 0 AAA domain MeaB PF03308.16 gi|530548100|ref|YP_008428634.1| - 0.019 13.9 0.1 0.044 12.8 0.1 1.6 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_33 PF13671.6 gi|530548100|ref|YP_008428634.1| - 0.023 14.8 0.4 0.045 13.9 0.4 1.7 1 1 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|530548100|ref|YP_008428634.1| - 0.043 13.9 1.1 0.093 12.8 1.1 2.0 1 1 0 1 1 1 0 50S ribosome-binding GTPase Viral_helicase1 PF01443.18 gi|530548100|ref|YP_008428634.1| - 0.05 13.3 0.0 0.074 12.8 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase NTPase_1 PF03266.15 gi|530548100|ref|YP_008428634.1| - 0.052 13.4 0.5 0.052 13.4 0.5 1.9 2 2 1 3 3 3 0 NTPase PAS_9 PF13426.7 gi|530548100|ref|YP_008428634.1| - 0.057 13.7 0.0 0.098 12.9 0.0 1.5 1 0 0 1 1 1 0 PAS domain Zeta_toxin PF06414.12 gi|530548100|ref|YP_008428634.1| - 0.064 12.5 1.1 0.28 10.4 0.0 2.2 2 1 0 2 2 2 0 Zeta toxin AAA_3 PF07726.11 gi|530548100|ref|YP_008428634.1| - 0.1 12.4 0.1 0.46 10.4 0.0 2.0 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) ABC_tran PF00005.27 gi|530548100|ref|YP_008428634.1| - 0.11 13.0 0.0 0.16 12.5 0.0 1.5 1 1 0 1 1 1 0 ABC transporter APS_kinase PF01583.20 gi|530548100|ref|YP_008428634.1| - 0.11 12.4 0.8 0.64 9.9 0.0 2.2 2 1 0 2 2 2 0 Adenylylsulphate kinase SH3_11 PF18103.1 gi|530548100|ref|YP_008428634.1| - 0.13 12.4 0.0 0.28 11.4 0.0 1.5 1 0 0 1 1 1 0 Retroviral integrase C-terminal SH3 domain AAA_30 PF13604.6 gi|530548100|ref|YP_008428634.1| - 0.88 9.3 3.6 0.61 9.8 0.3 2.1 2 1 0 2 2 2 0 AAA domain SecY PF00344.20 gi|530548101|ref|YP_008428635.1| - 2.3e-72 243.9 16.7 2.8e-72 243.6 16.7 1.1 1 0 0 1 1 1 1 SecY translocase Plug_translocon PF10559.9 gi|530548101|ref|YP_008428635.1| - 3.6e-12 45.9 2.3 4.2e-12 45.7 0.4 2.3 2 0 0 2 2 2 1 Plug domain of Sec61p Ribosomal_L27A PF00828.19 gi|530547451|ref|YP_008428636.1| - 1.3e-19 71.2 0.5 2e-19 70.5 0.5 1.3 1 0 0 1 1 1 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A Ribosomal_L30 PF00327.20 gi|530548102|ref|YP_008428637.1| - 5.5e-17 61.4 1.2 9.5e-17 60.6 1.2 1.4 1 0 0 1 1 1 1 Ribosomal protein L30p/L7e zf-SCNM1 PF15803.5 gi|530548102|ref|YP_008428637.1| - 0.032 13.9 0.0 0.057 13.1 0.0 1.4 1 0 0 1 1 1 0 Zinc-finger of sodium channel modifier 1 Ribosomal_S5_C PF03719.15 gi|530548103|ref|YP_008428638.1| - 7.4e-22 76.6 0.0 1.5e-21 75.6 0.0 1.5 1 0 0 1 1 1 1 Ribosomal protein S5, C-terminal domain Ribosomal_S5 PF00333.20 gi|530548103|ref|YP_008428638.1| - 1.4e-21 76.2 1.2 2.9e-21 75.2 1.2 1.5 1 0 0 1 1 1 1 Ribosomal protein S5, N-terminal domain Ribosomal_L5e PF17144.4 gi|530547452|ref|YP_008428639.1| - 1.6e-27 96.5 0.1 8.6e-16 58.4 0.0 2.6 2 1 1 3 3 3 2 Ribosomal large subunit proteins 60S L5, and 50S L18 Ribosomal_L18_c PF14204.6 gi|530547452|ref|YP_008428639.1| - 1.5e-12 48.3 1.4 2.8e-12 47.4 1.4 1.4 1 0 0 1 1 1 1 Ribosomal L18 C-terminal region Ribosomal_L18p PF00861.22 gi|530547452|ref|YP_008428639.1| - 1.2e-08 35.3 0.0 1.7e-08 34.8 0.0 1.3 1 0 0 1 1 1 1 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast Ribosomal_L19e PF01280.20 gi|530548104|ref|YP_008428640.1| - 4.5e-58 195.4 15.3 4.9e-58 195.3 15.3 1.0 1 0 0 1 1 1 1 Ribosomal protein L19e Ribosomal_L32e PF01655.18 gi|530548105|ref|YP_008428641.1| - 2.8e-42 143.5 0.3 3.4e-42 143.2 0.3 1.1 1 0 0 1 1 1 1 Ribosomal protein L32 Ribosomal_L6 PF00347.23 gi|530548106|ref|YP_008428642.1| - 7e-36 122.8 10.4 8.3e-20 71.2 1.9 2.1 2 0 0 2 2 2 2 Ribosomal protein L6 Ribosomal_S8 PF00410.19 gi|530548107|ref|YP_008428643.1| - 4.8e-29 100.9 0.0 5.9e-29 100.6 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S8 Ribosomal_S14 PF00253.21 gi|530548108|ref|YP_008428644.1| - 6.6e-09 35.4 4.8 7.4e-09 35.2 4.8 1.1 1 0 0 1 1 1 1 Ribosomal protein S14p/S29e DUF2039 PF10217.9 gi|530548108|ref|YP_008428644.1| - 0.14 12.5 1.8 3.3 8.1 0.0 2.0 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2039) Ribosomal_L5_C PF00673.21 gi|530548109|ref|YP_008428645.1| - 2.2e-27 95.1 0.0 4.1e-27 94.2 0.0 1.4 1 0 0 1 1 1 1 ribosomal L5P family C-terminus Ribosomal_L5 PF00281.19 gi|530548109|ref|YP_008428645.1| - 1.2e-20 73.5 0.2 2.2e-20 72.7 0.2 1.4 1 0 0 1 1 1 1 Ribosomal protein L5 Ribosomal_S4e PF00900.20 gi|530548110|ref|YP_008428646.1| - 1.5e-24 85.7 0.2 4.3e-24 84.2 0.1 1.7 2 0 0 2 2 2 1 Ribosomal family S4e RS4NT PF08071.12 gi|530548110|ref|YP_008428646.1| - 1e-17 63.9 4.5 1.7e-17 63.2 4.5 1.4 1 0 0 1 1 1 1 RS4NT (NUC023) domain S4 PF01479.25 gi|530548110|ref|YP_008428646.1| - 5.3e-13 48.5 0.9 9.4e-13 47.7 0.1 1.8 2 0 0 2 2 2 1 S4 domain S4_2 PF13275.6 gi|530548110|ref|YP_008428646.1| - 0.0014 18.4 0.0 0.004 16.9 0.0 1.8 1 0 0 1 1 1 1 S4 domain KOW PF00467.29 gi|530548110|ref|YP_008428646.1| - 0.008 16.1 1.6 0.021 14.8 1.6 1.8 1 0 0 1 1 1 1 KOW motif DUF4920 PF16267.5 gi|530548110|ref|YP_008428646.1| - 0.038 14.0 0.0 0.25 11.3 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4920) Ribosomal_L26 PF16906.5 gi|530548111|ref|YP_008428647.1| - 7.6e-37 125.6 0.8 9.6e-37 125.3 0.8 1.1 1 0 0 1 1 1 1 Ribosomal proteins L26 eukaryotic, L24P archaeal KOW PF00467.29 gi|530548111|ref|YP_008428647.1| - 6.1e-10 38.7 3.7 6.1e-10 38.7 3.7 1.9 2 0 0 2 2 2 1 KOW motif Ribosomal_L14 PF00238.19 gi|530548112|ref|YP_008428648.1| - 2.3e-36 124.5 1.8 2.9e-36 124.3 1.8 1.0 1 0 0 1 1 1 1 Ribosomal protein L14p/L23e DUF5335 PF17269.2 gi|530548112|ref|YP_008428648.1| - 0.099 12.5 0.0 0.16 11.9 0.0 1.2 1 0 0 1 1 1 0 Family of unknown function (DUF5335) Ribosomal_S17 PF00366.20 gi|530548113|ref|YP_008428649.1| - 6.3e-25 87.1 0.5 8.2e-25 86.7 0.5 1.2 1 0 0 1 1 1 1 Ribosomal protein S17 Ribosomal_S17_N PF16205.5 gi|530548113|ref|YP_008428649.1| - 0.011 16.1 0.3 0.02 15.3 0.0 1.6 2 0 0 2 2 2 0 Ribosomal_S17 N-terminal UPF0086 PF01868.16 gi|530548114|ref|YP_008428650.1| - 6.7e-23 80.4 0.1 7.5e-23 80.3 0.1 1.0 1 0 0 1 1 1 1 Domain of unknown function UPF0086 SUI1 PF01253.22 gi|530548115|ref|YP_008428651.1| - 1.3e-19 70.4 0.5 1.6e-19 70.2 0.5 1.1 1 0 0 1 1 1 1 Translation initiation factor SUI1 Img2 PF05046.14 gi|530548115|ref|YP_008428651.1| - 0.00012 22.3 0.3 0.00017 21.8 0.3 1.3 1 1 0 1 1 1 1 Mitochondrial large subunit ribosomal protein (Img2) Ribosomal_L29 PF00831.23 gi|530548116|ref|YP_008428652.1| - 2.8e-18 65.6 3.9 3.2e-18 65.4 3.9 1.0 1 0 0 1 1 1 1 Ribosomal L29 protein DUF1192 PF06698.11 gi|530548116|ref|YP_008428652.1| - 0.014 15.4 3.2 0.054 13.6 0.3 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1192) Radical_SAM PF04055.21 gi|530548116|ref|YP_008428652.1| - 0.086 13.2 0.1 0.09 13.2 0.1 1.1 1 0 0 1 1 1 0 Radical SAM superfamily Ribosomal_S3_C PF00189.20 gi|530548117|ref|YP_008428653.1| - 3.6e-24 85.1 1.1 5.9e-24 84.4 1.1 1.3 1 0 0 1 1 1 1 Ribosomal protein S3, C-terminal domain KH_2 PF07650.17 gi|530548117|ref|YP_008428653.1| - 1.2e-15 57.1 0.2 3.1e-15 55.8 0.2 1.7 1 0 0 1 1 1 1 KH domain KH_1 PF00013.29 gi|530548117|ref|YP_008428653.1| - 0.038 13.8 2.8 0.058 13.2 0.2 2.5 3 0 0 3 3 3 0 KH domain Mucin_bdg PF03272.13 gi|530548117|ref|YP_008428653.1| - 0.044 13.8 0.0 0.067 13.2 0.0 1.2 1 0 0 1 1 1 0 Putative mucin or carbohydrate-binding module Ribosomal_L22 PF00237.19 gi|530548118|ref|YP_008428654.1| - 2.4e-30 104.8 0.0 2.8e-30 104.6 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L22p/L17e Ribosomal_S19 PF00203.21 gi|530548119|ref|YP_008428655.1| - 1.5e-35 120.9 0.4 1.9e-35 120.6 0.4 1.1 1 0 0 1 1 1 1 Ribosomal protein S19 Sas10 PF09368.10 gi|530548119|ref|YP_008428655.1| - 0.0052 17.2 1.8 0.012 16.1 1.8 1.6 1 0 0 1 1 1 1 Sas10 C-terminal domain pPIWI_RE_Z PF18155.1 gi|530548119|ref|YP_008428655.1| - 0.032 14.1 0.1 0.043 13.7 0.1 1.1 1 0 0 1 1 1 0 pPIWI RE three-gene island domain Z Myb_DNA-bind_7 PF15963.5 gi|530548119|ref|YP_008428655.1| - 0.033 14.1 0.2 0.048 13.6 0.2 1.3 1 0 0 1 1 1 0 Myb DNA-binding like Citrate_synt PF00285.21 gi|530548119|ref|YP_008428655.1| - 0.15 11.1 0.0 0.15 11.1 0.0 1.1 1 0 0 1 1 1 0 Citrate synthase, C-terminal domain bZIP_Maf PF03131.17 gi|530548119|ref|YP_008428655.1| - 0.23 12.0 3.9 0.44 11.1 3.9 1.5 1 1 0 1 1 1 0 bZIP Maf transcription factor Ribosomal_L2_C PF03947.18 gi|530548120|ref|YP_008428656.1| - 2.6e-43 147.2 1.1 4.4e-43 146.5 1.1 1.3 1 0 0 1 1 1 1 Ribosomal Proteins L2, C-terminal domain Ribosomal_L2 PF00181.23 gi|530548120|ref|YP_008428656.1| - 4.1e-21 74.7 0.0 1.1e-20 73.3 0.0 1.8 1 0 0 1 1 1 1 Ribosomal Proteins L2, RNA binding domain Ribosomal_L23 PF00276.20 gi|530548121|ref|YP_008428657.1| - 1e-19 70.7 8.6 1.1e-18 67.4 8.6 1.9 1 1 0 1 1 1 1 Ribosomal protein L23 TusA PF01206.17 gi|530548121|ref|YP_008428657.1| - 0.0036 17.1 0.4 0.0046 16.7 0.4 1.3 1 0 0 1 1 1 1 Sulfurtransferase TusA DNA_mis_repair PF01119.19 gi|530548121|ref|YP_008428657.1| - 0.011 15.4 0.2 0.012 15.3 0.2 1.2 1 0 0 1 1 1 0 DNA mismatch repair protein, C-terminal domain Ribosomal_L4 PF00573.22 gi|530548122|ref|YP_008428658.1| - 2.7e-49 167.5 0.3 3.1e-49 167.3 0.3 1.0 1 0 0 1 1 1 1 Ribosomal protein L4/L1 family DUF2149 PF09919.9 gi|530548122|ref|YP_008428658.1| - 0.015 15.5 0.1 0.027 14.7 0.1 1.5 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2149) Ribosomal_L3 PF00297.22 gi|530548123|ref|YP_008428659.1| - 8.4e-87 291.5 0.2 9.4e-87 291.4 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein L3 Methyltrn_RNA_3 PF02598.17 gi|530548124|ref|YP_008428660.1| - 1.6e-51 175.6 0.0 1.8e-51 175.4 0.0 1.0 1 0 0 1 1 1 1 Putative RNA methyltransferase SpoU_methylase PF00588.19 gi|530548124|ref|YP_008428660.1| - 3.6e-05 23.9 0.0 0.044 13.9 0.0 2.2 2 0 0 2 2 2 2 SpoU rRNA Methylase family HycI PF01750.18 gi|530548125|ref|YP_008428661.1| - 4e-21 75.2 1.3 4.6e-21 75.0 1.3 1.1 1 0 0 1 1 1 1 Hydrogenase maturation protease ACT PF01842.25 gi|530548125|ref|YP_008428661.1| - 0.092 12.5 0.1 3 7.7 0.0 2.6 1 1 1 2 2 2 0 ACT domain NiFeSe_Hases PF00374.19 gi|530548126|ref|YP_008428662.1| - 7.3e-28 97.7 0.0 8.8e-13 48.0 0.0 3.2 1 1 2 3 3 3 3 Nickel-dependent hydrogenase Citrate_synt PF00285.21 gi|530548126|ref|YP_008428662.1| - 0.055 12.5 0.1 0.35 9.9 0.0 2.0 2 0 0 2 2 2 0 Citrate synthase, C-terminal domain Oxidored_q6 PF01058.22 gi|530548127|ref|YP_008428663.1| - 1e-26 93.3 0.0 1.8e-26 92.5 0.0 1.4 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit eIF2_C PF09173.11 gi|530548127|ref|YP_008428663.1| - 0.014 15.7 0.0 0.028 14.6 0.0 1.5 1 0 0 1 1 1 0 Initiation factor eIF2 gamma, C terminal NAD_binding_1 PF00175.21 gi|530548128|ref|YP_008428664.1| - 1.5e-13 51.3 0.0 2.3e-13 50.7 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase NAD-binding domain DHODB_Fe-S_bind PF10418.9 gi|530548128|ref|YP_008428664.1| - 2.7e-13 49.5 2.6 4.4e-13 48.8 2.6 1.4 1 0 0 1 1 1 1 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B FAD_binding_6 PF00970.24 gi|530548128|ref|YP_008428664.1| - 6.8e-08 32.8 0.0 1.1e-07 32.2 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase FAD-binding domain NAD_binding_6 PF08030.12 gi|530548128|ref|YP_008428664.1| - 0.00022 21.4 0.0 0.28 11.3 0.0 2.2 1 1 1 2 2 2 2 Ferric reductase NAD binding domain FAD_binding_8 PF08022.12 gi|530548128|ref|YP_008428664.1| - 0.0092 16.1 0.3 0.092 12.8 0.0 2.6 3 1 0 3 3 3 1 FAD-binding domain Fer4_22 PF17179.4 gi|530548129|ref|YP_008428665.1| - 1.9e-27 96.0 14.5 6e-27 94.3 12.5 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|530548129|ref|YP_008428665.1| - 3.3e-07 30.3 10.5 0.0021 18.1 0.4 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|530548129|ref|YP_008428665.1| - 6.9e-07 29.8 7.7 0.0043 17.6 1.6 2.6 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|530548129|ref|YP_008428665.1| - 8.1e-07 29.4 10.2 2.7e-06 27.7 10.1 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|530548129|ref|YP_008428665.1| - 1.3e-06 28.2 12.5 0.0065 16.5 2.6 2.9 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|530548129|ref|YP_008428665.1| - 6.8e-06 26.5 11.5 0.0086 16.6 1.3 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|530548129|ref|YP_008428665.1| - 0.00011 21.8 13.3 0.0071 16.1 3.2 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|530548129|ref|YP_008428665.1| - 0.0002 21.4 12.3 0.0048 17.0 1.0 2.6 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|530548129|ref|YP_008428665.1| - 0.00071 19.9 2.0 0.00071 19.9 2.0 3.3 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_16 PF13484.6 gi|530548129|ref|YP_008428665.1| - 0.0028 18.5 9.6 0.29 12.1 0.8 2.8 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|530548129|ref|YP_008428665.1| - 0.0086 16.2 13.4 0.17 12.1 1.5 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|530548129|ref|YP_008428665.1| - 0.038 14.1 19.9 0.094 12.8 2.9 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|530548129|ref|YP_008428665.1| - 0.42 10.8 10.4 1.8 8.8 0.5 2.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain Molybdopterin PF00384.22 gi|530548130|ref|YP_008428666.1| - 1.8e-67 228.2 0.0 2.1e-67 227.9 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|530548130|ref|YP_008428666.1| - 1.6e-16 60.3 0.0 3e-16 59.4 0.0 1.4 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 gi|530548130|ref|YP_008428666.1| - 6.9e-07 29.2 0.1 1.4e-06 28.1 0.1 1.5 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain PUA_3 PF17785.1 gi|530548130|ref|YP_008428666.1| - 0.14 12.0 0.0 0.33 10.8 0.0 1.6 1 0 0 1 1 1 0 PUA-like domain Fer4_11 PF13247.6 gi|530548131|ref|YP_008428667.1| - 1.1e-22 80.0 10.1 1.1e-22 80.0 10.1 1.7 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|530548131|ref|YP_008428667.1| - 4.4e-10 39.2 35.0 3e-05 23.9 1.8 5.0 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_7 PF12838.7 gi|530548131|ref|YP_008428667.1| - 9.9e-10 38.9 29.4 3.3e-05 24.4 9.3 3.3 2 2 1 3 3 3 3 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|530548131|ref|YP_008428667.1| - 7.5e-09 35.6 28.9 4.4e-06 26.7 9.8 3.5 2 2 2 4 4 4 3 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|530548131|ref|YP_008428667.1| - 1.4e-08 34.3 31.1 0.003 17.6 2.2 4.4 4 1 0 4 4 4 4 4Fe-4S binding domain Fer4_9 PF13187.6 gi|530548131|ref|YP_008428667.1| - 6e-08 32.7 27.7 0.00019 21.5 10.4 3.2 1 1 4 5 5 5 5 4Fe-4S dicluster domain Fer4 PF00037.27 gi|530548131|ref|YP_008428667.1| - 1.3e-07 31.1 36.9 0.00014 21.5 2.0 5.3 6 0 0 6 6 6 4 4Fe-4S binding domain Fer4_21 PF14697.6 gi|530548131|ref|YP_008428667.1| - 1.3e-06 28.4 27.2 0.00042 20.4 8.9 3.8 2 1 3 5 5 5 3 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|530548131|ref|YP_008428667.1| - 2.5e-05 24.9 37.7 0.057 14.4 1.2 4.2 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_16 PF13484.6 gi|530548131|ref|YP_008428667.1| - 0.00034 21.5 26.5 0.53 11.3 0.0 4.5 3 1 3 6 6 6 4 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 gi|530548131|ref|YP_008428667.1| - 0.0012 19.2 35.7 0.04 14.4 4.3 4.6 4 1 0 4 4 4 3 4Fe-4S binding domain ETF_QO PF05187.13 gi|530548131|ref|YP_008428667.1| - 0.05 13.7 12.1 0.67 10.1 1.0 3.2 1 1 1 2 2 2 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_17 PF13534.6 gi|530548131|ref|YP_008428667.1| - 0.069 13.7 29.0 0.2 12.2 2.1 4.4 3 2 1 4 4 4 0 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|530548131|ref|YP_008428667.1| - 0.41 11.1 32.8 20 5.7 23.1 3.8 1 1 1 2 2 2 0 4Fe-4S dicluster domain Proton_antipo_M PF00361.20 gi|530548132|ref|YP_008428668.1| - 8.8e-46 156.4 20.0 8.8e-46 156.4 20.0 1.7 2 0 0 2 2 2 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|530548132|ref|YP_008428668.1| - 3.3e-05 23.9 2.8 5.7e-05 23.1 0.1 3.0 2 1 0 2 2 2 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Ninjurin PF04923.12 gi|530548132|ref|YP_008428668.1| - 8.7 6.4 12.8 0.18 11.7 0.3 3.7 4 0 0 4 4 4 0 Ninjurin Proton_antipo_M PF00361.20 gi|530548133|ref|YP_008428669.1| - 2.1e-58 197.8 26.8 2.1e-58 197.8 26.8 2.3 3 1 1 4 4 4 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|530548133|ref|YP_008428669.1| - 5.2e-05 23.2 1.5 5.2e-05 23.2 1.5 3.0 3 0 0 3 3 3 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus NADHdh PF00146.21 gi|530548134|ref|YP_008428670.1| - 1e-41 143.2 15.0 1.1e-41 143.1 15.0 1.0 1 0 0 1 1 1 1 NADH dehydrogenase Complex1_49kDa PF00346.19 gi|530548135|ref|YP_008428671.1| - 6e-67 225.6 0.0 7.1e-49 166.3 0.0 2.2 1 1 1 2 2 2 2 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Complex1_30kDa PF00329.19 gi|530548135|ref|YP_008428671.1| - 7.9e-24 84.6 0.0 1.7e-23 83.6 0.0 1.5 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit NiFeSe_Hases PF00374.19 gi|530548135|ref|YP_008428671.1| - 2.4e-17 63.0 3.7 9.9e-15 54.4 0.2 2.8 2 2 0 2 2 2 2 Nickel-dependent hydrogenase Fer4_7 PF12838.7 gi|530548136|ref|YP_008428672.1| - 9.3e-17 61.4 29.1 2.8e-13 50.2 9.5 2.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|530548136|ref|YP_008428672.1| - 8.1e-14 51.5 33.3 1.1e-08 35.0 10.7 3.0 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4 PF00037.27 gi|530548136|ref|YP_008428672.1| - 1.2e-13 50.2 29.5 5.1e-08 32.4 5.6 3.6 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|530548136|ref|YP_008428672.1| - 3.3e-12 46.3 23.4 3.4e-08 33.5 11.7 3.0 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|530548136|ref|YP_008428672.1| - 1.2e-10 40.9 15.9 4.2e-07 29.7 4.6 4.3 5 0 0 5 5 5 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|530548136|ref|YP_008428672.1| - 5e-09 37.0 15.9 2.2e-05 25.3 5.1 3.0 3 1 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|530548136|ref|YP_008428672.1| - 8.8e-09 35.0 25.7 9.1e-06 25.5 4.6 3.9 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|530548136|ref|YP_008428672.1| - 1.6e-08 34.6 7.7 1.6e-08 34.6 7.7 2.3 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|530548136|ref|YP_008428672.1| - 1.3e-07 31.9 11.7 0.0016 18.8 5.6 2.7 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|530548136|ref|YP_008428672.1| - 3.5e-06 27.1 24.9 0.00023 21.4 1.4 4.0 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|530548136|ref|YP_008428672.1| - 3.7e-05 24.2 17.2 0.012 16.2 1.9 3.3 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|530548136|ref|YP_008428672.1| - 0.0003 21.5 20.9 0.0062 17.4 8.3 3.3 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_22 PF17179.4 gi|530548136|ref|YP_008428672.1| - 0.00046 21.0 14.6 0.06 14.2 0.9 3.2 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|530548136|ref|YP_008428672.1| - 0.015 15.8 13.5 0.35 11.5 3.8 2.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_18 PF13746.6 gi|530548136|ref|YP_008428672.1| - 0.065 13.4 12.9 0.15 12.3 1.9 2.7 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|530548136|ref|YP_008428672.1| - 0.083 13.6 15.9 1.2 10.0 11.2 2.9 1 1 2 3 3 3 0 4Fe-4S single cluster domain Oxidored_q6 PF01058.22 gi|530548137|ref|YP_008428673.1| - 1.8e-27 95.7 0.0 2.5e-27 95.3 0.0 1.2 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit CRC_subunit PF08624.10 gi|530548137|ref|YP_008428673.1| - 0.091 13.2 0.1 0.15 12.5 0.1 1.2 1 0 0 1 1 1 0 Chromatin remodelling complex Rsc7/Swp82 subunit TetR_C_17 PF17922.1 gi|530548138|ref|YP_008428674.1| - 0.1 12.7 0.0 0.15 12.2 0.0 1.3 1 1 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain MrpF_PhaF PF04066.13 gi|530548139|ref|YP_008428675.1| - 2.9e-07 30.8 9.7 2.9e-07 30.8 9.7 2.0 2 0 0 2 2 2 1 Multiple resistance and pH regulation protein F (MrpF / PhaF) DUF4233 PF14017.6 gi|530548139|ref|YP_008428675.1| - 0.59 10.5 6.3 1.2 9.5 6.3 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF4233) PhaG_MnhG_YufB PF03334.14 gi|530548140|ref|YP_008428676.1| - 2.9e-18 65.9 8.8 2.9e-18 65.9 8.8 1.3 1 1 0 1 1 1 1 Na+/H+ antiporter subunit DUF4040 PF13244.6 gi|530548141|ref|YP_008428677.1| - 2.6e-10 40.3 11.6 3.2e-10 40.0 11.6 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4040) DUF2070 PF09843.9 gi|530548141|ref|YP_008428677.1| - 0.95 7.7 7.8 1 7.6 7.8 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) MnhB PF04039.13 gi|530548142|ref|YP_008428678.1| - 1.5e-20 73.7 14.0 1.5e-20 73.7 14.0 2.0 2 1 0 2 2 2 1 Domain related to MnhB subunit of Na+/H+ antiporter DUF2106 PF09879.9 gi|530548142|ref|YP_008428678.1| - 0.00022 20.8 0.1 0.00053 19.6 0.1 1.7 1 0 0 1 1 1 1 Predicted membrane protein (DUF2106) Oxidored_q2 PF00420.24 gi|530548143|ref|YP_008428679.1| - 1.9e-23 82.1 0.8 2.5e-23 81.7 0.8 1.1 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DUF4538 PF15061.6 gi|530548143|ref|YP_008428679.1| - 0.014 15.1 1.3 0.014 15.1 1.3 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4538) PDGLE PF13190.6 gi|530548143|ref|YP_008428679.1| - 0.027 14.3 0.0 0.027 14.3 0.0 1.8 2 0 0 2 2 2 0 PDGLE domain MNHE PF01899.16 gi|530548144|ref|YP_008428680.1| - 2.1e-34 118.4 0.4 2.4e-34 118.2 0.4 1.0 1 0 0 1 1 1 1 Na+/H+ ion antiporter subunit Proton_antipo_M PF00361.20 gi|530548145|ref|YP_008428681.1| - 5.5e-56 189.9 24.9 5.5e-56 189.9 24.9 1.7 2 0 0 2 2 2 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|530548145|ref|YP_008428681.1| - 0.00013 22.0 1.0 0.00013 22.0 1.0 3.2 3 0 0 3 3 3 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Pyr_redox_2 PF07992.14 gi|530548148|ref|YP_008428684.1| - 1.2e-33 116.6 0.0 1.5e-33 116.3 0.0 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|530548148|ref|YP_008428684.1| - 2.8e-09 36.7 0.0 3.1e-06 26.7 0.0 2.6 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|530548148|ref|YP_008428684.1| - 7.9e-08 32.7 2.3 0.0023 18.5 0.0 3.1 4 0 0 4 4 3 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|530548148|ref|YP_008428684.1| - 4.6e-07 30.0 0.3 1.7e-06 28.1 0.0 2.1 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|530548148|ref|YP_008428684.1| - 2.5e-05 24.0 0.3 0.074 12.6 0.1 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase FMO-like PF00743.19 gi|530548148|ref|YP_008428684.1| - 4.3e-05 22.1 0.0 0.0021 16.6 0.0 2.2 2 0 0 2 2 2 1 Flavin-binding monooxygenase-like AlaDh_PNT_C PF01262.21 gi|530548148|ref|YP_008428684.1| - 5.4e-05 22.6 0.0 0.3 10.3 0.0 2.2 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain Shikimate_DH PF01488.20 gi|530548148|ref|YP_008428684.1| - 0.00014 21.9 0.0 0.76 9.8 0.0 3.2 3 0 0 3 3 3 1 Shikimate / quinate 5-dehydrogenase FAD_binding_3 PF01494.19 gi|530548148|ref|YP_008428684.1| - 0.00044 19.6 0.0 0.0012 18.2 0.0 1.7 1 0 0 1 1 1 1 FAD binding domain GIDA PF01134.22 gi|530548148|ref|YP_008428684.1| - 0.0019 17.3 1.1 3 6.8 0.0 3.3 4 0 0 4 4 4 2 Glucose inhibited division protein A HI0933_like PF03486.14 gi|530548148|ref|YP_008428684.1| - 0.002 16.9 0.6 0.0042 15.8 0.0 1.9 3 0 0 3 3 3 1 HI0933-like protein FAD_binding_2 PF00890.24 gi|530548148|ref|YP_008428684.1| - 0.0031 16.7 2.2 0.18 10.9 0.0 2.5 3 0 0 3 3 3 2 FAD binding domain 2-Hacid_dh_C PF02826.19 gi|530548148|ref|YP_008428684.1| - 0.009 15.4 0.0 4.7 6.5 0.0 2.9 3 0 0 3 3 3 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_7 PF13241.6 gi|530548148|ref|YP_008428684.1| - 0.011 16.1 0.0 3.3 8.2 0.0 2.3 2 0 0 2 2 2 0 Putative NAD(P)-binding Thi4 PF01946.17 gi|530548148|ref|YP_008428684.1| - 0.018 14.3 0.1 0.041 13.1 0.0 1.5 2 0 0 2 2 2 0 Thi4 family NAD_binding_9 PF13454.6 gi|530548148|ref|YP_008428684.1| - 0.042 13.9 0.3 0.24 11.4 0.1 2.3 3 0 0 3 3 3 0 FAD-NAD(P)-binding MCRA PF06100.11 gi|530548148|ref|YP_008428684.1| - 0.095 11.5 0.0 0.12 11.1 0.0 1.1 1 0 0 1 1 1 0 MCRA family Fer4_11 PF13247.6 gi|530548149|ref|YP_008428685.1| - 3.1e-26 91.4 9.0 3.1e-26 91.4 9.0 1.4 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|530548149|ref|YP_008428685.1| - 1e-10 41.2 38.4 5.9e-06 26.1 3.4 5.0 4 1 0 4 4 3 3 4Fe-4S binding domain Fer4_9 PF13187.6 gi|530548149|ref|YP_008428685.1| - 1.5e-10 41.1 24.0 8.9e-06 25.8 7.1 2.7 1 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|530548149|ref|YP_008428685.1| - 2.2e-10 39.9 38.2 0.00013 21.6 1.5 5.7 6 0 0 6 6 6 4 4Fe-4S binding domain Fer4_7 PF12838.7 gi|530548149|ref|YP_008428685.1| - 4.9e-10 39.8 30.1 1.9e-05 25.2 10.9 4.2 2 2 2 4 4 4 4 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|530548149|ref|YP_008428685.1| - 1.4e-09 37.9 27.8 3.3e-05 23.9 11.2 3.6 1 1 3 4 4 4 3 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|530548149|ref|YP_008428685.1| - 5.3e-07 29.3 31.7 0.00015 21.6 1.2 4.3 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_16 PF13484.6 gi|530548149|ref|YP_008428685.1| - 2.6e-06 28.3 30.3 0.24 12.4 2.7 5.1 4 1 1 5 5 5 4 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|530548149|ref|YP_008428685.1| - 0.00013 22.0 28.7 0.0053 16.9 11.2 3.7 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|530548149|ref|YP_008428685.1| - 0.0021 18.9 41.5 0.31 12.1 4.8 4.3 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_17 PF13534.6 gi|530548149|ref|YP_008428685.1| - 0.0022 18.5 27.9 0.33 11.5 2.3 4.5 3 2 0 4 4 4 3 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|530548149|ref|YP_008428685.1| - 0.0097 16.6 23.5 0.12 13.1 9.4 3.7 2 2 0 2 2 2 1 4Fe-4S single cluster domain Fer4_4 PF12800.7 gi|530548149|ref|YP_008428685.1| - 0.031 14.8 34.0 0.11 13.0 2.4 4.6 5 0 0 5 5 5 0 4Fe-4S binding domain Fer4_8 PF13183.6 gi|530548149|ref|YP_008428685.1| - 0.097 13.1 32.6 19 5.8 11.5 4.4 2 2 1 3 3 3 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|530548149|ref|YP_008428685.1| - 1.9 8.7 21.6 1.8 8.8 7.3 3.4 2 1 1 3 3 3 0 4Fe-4S dicluster domain MFS_1 PF07690.16 gi|530548150|ref|YP_008428686.1| - 6.4e-53 179.9 46.5 1.1e-45 156.1 29.7 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|530548150|ref|YP_008428686.1| - 1.5e-10 40.5 26.3 5.5e-10 38.7 6.7 2.3 2 0 0 2 2 2 2 Sugar (and other) transporter DUF5090 PF17009.5 gi|530548150|ref|YP_008428686.1| - 0.42 10.6 4.7 0.18 11.8 1.9 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF5090) OATP PF03137.20 gi|530548150|ref|YP_008428686.1| - 0.47 8.7 16.9 0.23 9.7 3.4 3.2 2 1 1 3 3 3 0 Organic Anion Transporter Polypeptide (OATP) family Folate_carrier PF01770.18 gi|530548150|ref|YP_008428686.1| - 0.63 8.7 8.4 0.063 12.0 3.6 1.7 1 1 1 2 2 2 0 Reduced folate carrier MFS_1_like PF12832.7 gi|530548150|ref|YP_008428686.1| - 0.76 8.6 24.4 0.02 13.8 1.4 3.8 1 1 2 4 4 4 0 MFS_1 like family DHHC PF01529.20 gi|530548150|ref|YP_008428686.1| - 3.2 7.9 8.7 7.1 6.7 0.3 2.9 3 0 0 3 3 3 0 DHHC palmitoyltransferase RIO1 PF01163.22 gi|530548151|ref|YP_008428687.1| - 4e-48 163.5 0.1 5.1e-48 163.2 0.1 1.1 1 0 0 1 1 1 1 RIO1 family Rio2_N PF09202.11 gi|530548151|ref|YP_008428687.1| - 1.7e-24 85.8 0.0 3.6e-24 84.8 0.0 1.6 1 0 0 1 1 1 1 Rio2, N-terminal Pkinase PF00069.25 gi|530548151|ref|YP_008428687.1| - 4.5e-07 29.5 2.6 3.4e-06 26.6 2.6 1.9 1 1 0 1 1 1 1 Protein kinase domain APH PF01636.23 gi|530548151|ref|YP_008428687.1| - 3.3e-06 27.2 0.5 0.022 14.7 0.0 2.8 1 1 1 2 2 2 2 Phosphotransferase enzyme family Kdo PF06293.14 gi|530548151|ref|YP_008428687.1| - 5.4e-05 22.6 0.1 8.9e-05 21.9 0.1 1.4 1 0 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family Opacity PF02462.15 gi|530548151|ref|YP_008428687.1| - 0.021 14.9 0.1 0.037 14.1 0.1 1.3 1 0 0 1 1 1 0 Opacity family porin protein WaaY PF06176.11 gi|530548151|ref|YP_008428687.1| - 0.03 13.9 0.0 0.049 13.2 0.0 1.2 1 0 0 1 1 1 0 Lipopolysaccharide core biosynthesis protein (WaaY) La PF05383.17 gi|530548151|ref|YP_008428687.1| - 0.039 14.0 0.0 0.13 12.4 0.0 1.8 1 0 0 1 1 1 0 La domain MarR_2 PF12802.7 gi|530548151|ref|YP_008428687.1| - 0.11 12.3 0.0 0.29 11.0 0.0 1.6 1 0 0 1 1 1 0 MarR family FPRL1_inhibitor PF16104.5 gi|530548152|ref|YP_008428688.1| - 0.011 15.8 1.4 2.7 8.2 0.1 2.7 2 1 1 3 3 3 0 Formyl peptide receptor-like 1 inhibitory protein Radical_SAM PF04055.21 gi|530548153|ref|YP_008428689.1| - 1.1e-12 48.6 0.2 9.8e-12 45.6 0.0 2.2 2 0 0 2 2 2 1 Radical SAM superfamily MFS_1 PF07690.16 gi|530548154|ref|YP_008428690.1| - 1.3e-46 159.2 53.9 2e-44 152.0 45.4 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_3 PF05977.13 gi|530548154|ref|YP_008428690.1| - 3.7e-07 28.9 12.7 6.6e-07 28.1 12.7 1.3 1 1 0 1 1 1 1 Transmembrane secretion effector BT1 PF03092.16 gi|530548154|ref|YP_008428690.1| - 0.11 10.7 5.0 1.1 7.4 0.0 2.2 2 0 0 2 2 2 0 BT1 family PT-VENN PF04829.13 gi|530548154|ref|YP_008428690.1| - 0.17 12.0 0.0 8.6 6.5 0.0 2.5 2 0 0 2 2 2 0 Pre-toxin domain with VENN motif PUCC PF03209.15 gi|530548154|ref|YP_008428690.1| - 1.2 8.1 19.4 0.0072 15.4 9.6 2.1 2 1 1 3 3 3 0 PUCC protein Gly-zipper_Omp PF13488.6 gi|530548154|ref|YP_008428690.1| - 4.4 7.4 7.1 7.4 6.7 2.8 2.7 2 1 0 2 2 2 0 Glycine zipper Asparaginase_2 PF01112.18 gi|530548155|ref|YP_008428691.1| - 5.6e-93 311.3 1.4 6.8e-93 311.0 1.4 1.0 1 0 0 1 1 1 1 Asparaginase DUF1612 PF07756.12 gi|530548155|ref|YP_008428691.1| - 0.017 15.4 0.2 4.8 7.4 0.0 2.9 2 1 1 3 3 3 0 Protein of unknown function (DUF1612) OAM_dimer PF16554.5 gi|530548155|ref|YP_008428691.1| - 0.12 12.9 0.1 25 5.4 0.0 3.0 2 1 1 3 3 3 0 Dimerisation domain of d-ornithine 4,5-aminomutase PhoU PF01895.19 gi|530548156|ref|YP_008428692.1| - 5.5e-13 49.2 6.6 2.6e-11 43.8 0.6 2.4 2 0 0 2 2 2 2 PhoU domain MazE_antitoxin PF04014.18 gi|530548156|ref|YP_008428692.1| - 1.9e-09 37.2 0.3 6.2e-09 35.6 0.3 2.0 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin MatE PF01554.18 gi|530548157|ref|YP_008428693.1| - 1.4e-29 102.9 12.9 2.5e-26 92.3 7.4 3.2 4 0 0 4 4 4 2 MatE Polysacc_synt_C PF14667.6 gi|530548157|ref|YP_008428693.1| - 3.8e-09 36.8 4.7 3.8e-09 36.8 4.7 3.3 2 1 1 3 3 3 2 Polysaccharide biosynthesis C-terminal domain Pox_E8 PF03394.13 gi|530548157|ref|YP_008428693.1| - 0.077 12.5 0.7 4.8 6.7 0.1 2.2 2 0 0 2 2 2 0 Poxvirus E8 protein MatE PF01554.18 gi|530548158|ref|YP_008428694.1| - 2.8e-18 66.1 2.7 3.4e-18 65.8 2.7 1.0 1 0 0 1 1 1 1 MatE MatE PF01554.18 gi|530548159|ref|YP_008428695.1| - 9.6e-64 213.9 27.9 2.5e-35 121.5 10.5 2.7 4 0 0 4 4 4 2 MatE Polysacc_synt_C PF14667.6 gi|530548159|ref|YP_008428695.1| - 1.4e-09 38.2 34.5 5.3e-07 29.8 13.5 4.1 3 1 0 3 3 3 2 Polysaccharide biosynthesis C-terminal domain Corona_NS4 PF03905.13 gi|530548159|ref|YP_008428695.1| - 0.75 9.9 2.8 5 7.2 0.5 2.6 2 0 0 2 2 2 0 Coronavirus non-structural protein NS4 PPDK_N PF01326.19 gi|530548160|ref|YP_008428696.1| - 1.2e-118 396.2 2.1 1.9e-118 395.5 2.1 1.3 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers_C PF02896.18 gi|530548160|ref|YP_008428696.1| - 3.6e-99 331.6 0.0 6.5e-99 330.7 0.0 1.4 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilizers PF00391.23 gi|530548160|ref|YP_008428696.1| - 3.3e-29 100.4 1.1 8.2e-29 99.1 1.1 1.7 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain OST_P2 PF18235.1 gi|530548160|ref|YP_008428696.1| - 0.025 14.5 0.6 0.12 12.3 0.3 2.3 2 0 0 2 2 2 0 Oligosaccharyltransferase Peripheral 2 domain Mod_r PF07200.13 gi|530548160|ref|YP_008428696.1| - 0.096 12.8 0.3 0.2 11.8 0.3 1.5 1 0 0 1 1 1 0 Modifier of rudimentary (Mod(r)) protein Regulator_TrmB PF11495.8 gi|530548162|ref|YP_008428698.1| - 0.00042 19.6 0.3 0.0006 19.1 0.3 1.3 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB O_anti_polymase PF01901.16 gi|530548163|ref|YP_008428699.1| - 6.1e-58 196.7 21.4 7.4e-58 196.4 21.4 1.1 1 0 0 1 1 1 1 Putative O-antigen polymerase O_anti_polymase PF01901.16 gi|530548164|ref|YP_008428700.1| - 2.3e-15 56.7 20.7 3.5e-15 56.1 20.7 1.3 1 0 0 1 1 1 1 Putative O-antigen polymerase YlaC PF10777.9 gi|530548164|ref|YP_008428700.1| - 9.5 6.0 10.3 12 5.7 1.6 3.1 1 1 1 2 2 2 0 Inner membrane protein YlaC PMT_2 PF13231.6 gi|530548165|ref|YP_008428701.1| - 3.4e-19 69.6 14.0 3.4e-19 69.6 14.0 3.0 3 1 0 3 3 3 1 Dolichyl-phosphate-mannose-protein mannosyltransferase PMT PF02366.18 gi|530548165|ref|YP_008428701.1| - 1.3e-09 38.0 15.8 1.3e-09 38.0 15.8 2.9 1 1 1 2 2 2 1 Dolichyl-phosphate-mannose-protein mannosyltransferase Glyco_transf_22 PF03901.17 gi|530548165|ref|YP_008428701.1| - 1.4e-06 27.8 22.4 1.8e-06 27.5 2.1 2.3 2 1 0 2 2 2 2 Alg9-like mannosyltransferase family DUF2723 PF11028.8 gi|530548165|ref|YP_008428701.1| - 9e-05 22.5 7.1 0.00033 20.6 7.1 1.9 1 0 0 1 1 1 1 Protein of unknown function (DUF2723) O_anti_polymase PF01901.16 gi|530548166|ref|YP_008428702.1| - 3.7e-10 39.6 3.2 4.3e-10 39.4 3.2 1.1 1 0 0 1 1 1 1 Putative O-antigen polymerase DUF5060 PF16586.5 gi|530548166|ref|YP_008428702.1| - 0.078 13.4 0.1 0.11 12.9 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF5060) Peptidase_M20 PF01546.28 gi|530548167|ref|YP_008428703.1| - 9e-38 130.0 0.4 1.3e-37 129.5 0.4 1.2 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|530548167|ref|YP_008428703.1| - 1.2e-12 47.6 0.0 3.6e-12 46.2 0.0 1.8 1 0 0 1 1 1 1 Peptidase dimerisation domain DUF424 PF04242.13 gi|530548169|ref|YP_008428705.1| - 1.5e-32 111.7 0.1 1.6e-32 111.6 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF424) NMD3 PF04981.13 gi|530548171|ref|YP_008428707.1| - 7.1e-63 212.3 2.4 7.1e-63 212.3 2.4 1.6 2 0 0 2 2 2 1 NMD3 family EFP PF01132.20 gi|530548171|ref|YP_008428707.1| - 0.026 14.6 0.1 0.077 13.0 0.1 1.9 1 0 0 1 1 1 0 Elongation factor P (EF-P) OB domain Ubiquitin_3 PF14836.6 gi|530548171|ref|YP_008428707.1| - 0.036 14.0 0.6 0.15 12.1 0.3 2.2 2 0 0 2 2 2 0 Ubiquitin-like domain DUF555 PF04475.12 gi|530548171|ref|YP_008428707.1| - 0.037 14.3 0.1 0.095 13.0 0.1 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF555) GFA PF04828.14 gi|530548171|ref|YP_008428707.1| - 0.045 14.1 0.5 5.4 7.4 0.0 3.2 3 0 0 3 3 3 0 Glutathione-dependent formaldehyde-activating enzyme MafB19-deam PF14437.6 gi|530548171|ref|YP_008428707.1| - 0.074 12.8 1.3 0.6 9.9 0.2 2.5 2 0 0 2 2 2 0 MafB19-like deaminase zf-ribbon_3 PF13248.6 gi|530548171|ref|YP_008428707.1| - 0.31 10.5 2.4 13 5.4 0.0 3.1 3 0 0 3 3 3 0 zinc-ribbon domain Rpr2 PF04032.16 gi|530548171|ref|YP_008428707.1| - 0.51 10.7 5.2 7.2 7.0 0.1 2.9 3 0 0 3 3 3 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain Zn-ribbon_8 PF09723.10 gi|530548171|ref|YP_008428707.1| - 1.5 9.0 5.4 4.6 7.4 0.2 2.8 3 0 0 3 3 3 0 Zinc ribbon domain DZR PF12773.7 gi|530548171|ref|YP_008428707.1| - 1.7 8.7 6.5 35 4.5 3.8 2.9 2 1 0 2 2 2 0 Double zinc ribbon MCPsignal PF00015.21 gi|530548172|ref|YP_008428708.1| - 2.3e-32 112.2 24.9 4.4e-31 108.0 15.9 3.0 1 1 2 3 3 3 2 Methyl-accepting chemotaxis protein (MCP) signalling domain CheZ PF04344.13 gi|530548172|ref|YP_008428708.1| - 0.00025 21.0 5.3 0.00025 21.0 5.3 2.6 1 1 2 3 3 3 1 Chemotaxis phosphatase, CheZ Sec34 PF04136.15 gi|530548172|ref|YP_008428708.1| - 0.00032 20.6 13.0 0.0012 18.8 1.4 3.1 2 1 1 3 3 3 2 Sec34-like family Laminin_II PF06009.12 gi|530548172|ref|YP_008428708.1| - 0.00062 19.8 20.9 0.15 12.0 8.1 3.1 1 1 1 2 2 2 2 Laminin Domain II NPV_P10 PF05531.12 gi|530548172|ref|YP_008428708.1| - 0.0011 19.4 16.4 0.013 16.0 2.4 3.8 2 2 2 4 4 4 2 Nucleopolyhedrovirus P10 protein Effector_1 PF04518.12 gi|530548172|ref|YP_008428708.1| - 0.0012 18.1 3.4 0.0012 18.1 3.4 1.5 2 0 0 2 2 2 1 Effector from type III secretion system DUF948 PF06103.11 gi|530548172|ref|YP_008428708.1| - 0.0014 18.9 16.1 0.024 14.9 1.4 3.5 1 1 3 4 4 4 1 Bacterial protein of unknown function (DUF948) Syntaxin PF00804.25 gi|530548172|ref|YP_008428708.1| - 0.0023 17.6 3.2 0.0023 17.6 3.2 3.2 1 1 1 3 3 3 1 Syntaxin FlaC_arch PF05377.11 gi|530548172|ref|YP_008428708.1| - 0.005 17.2 20.5 0.15 12.5 1.6 4.9 2 2 2 4 4 4 1 Flagella accessory protein C (FlaC) BLOC1_2 PF10046.9 gi|530548172|ref|YP_008428708.1| - 0.0082 16.4 17.5 0.66 10.3 2.1 3.7 2 1 2 4 4 4 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 Syntaxin-6_N PF09177.11 gi|530548172|ref|YP_008428708.1| - 0.0094 16.5 14.9 1.2 9.7 3.3 3.5 2 1 1 3 3 3 2 Syntaxin 6, N-terminal Phage_HK97_TLTM PF06120.11 gi|530548172|ref|YP_008428708.1| - 0.019 14.1 16.3 0.038 13.2 9.7 2.0 2 0 0 2 2 2 0 Tail length tape measure protein Mce4_CUP1 PF11887.8 gi|530548172|ref|YP_008428708.1| - 0.024 14.1 2.7 0.056 12.9 1.8 2.0 1 1 0 1 1 1 0 Cholesterol uptake porter CUP1 of Mce4, putative SKA1 PF07160.12 gi|530548172|ref|YP_008428708.1| - 0.027 14.3 11.9 0.29 11.0 4.0 3.2 1 1 2 3 3 3 0 Spindle and kinetochore-associated protein 1 IFT46_B_C PF12317.8 gi|530548172|ref|YP_008428708.1| - 0.039 13.7 4.0 0.082 12.6 4.0 1.6 1 1 0 1 1 1 0 Intraflagellar transport complex B protein 46 C terminal T7SS_ESX_EspC PF10824.8 gi|530548172|ref|YP_008428708.1| - 0.044 14.3 7.0 0.11 12.9 0.3 3.0 1 1 1 3 3 3 0 Excreted virulence factor EspC, type VII ESX diderm RPW8 PF05659.11 gi|530548172|ref|YP_008428708.1| - 0.056 13.1 14.0 0.31 10.7 2.6 3.2 2 1 1 3 3 3 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 Mur_ligase_C PF02875.21 gi|530548172|ref|YP_008428708.1| - 0.064 13.5 0.6 0.64 10.3 0.1 2.4 1 1 2 3 3 3 0 Mur ligase family, glutamate ligase domain COG2 PF06148.11 gi|530548172|ref|YP_008428708.1| - 0.066 13.3 18.7 0.05 13.7 1.8 3.8 1 1 2 3 3 3 0 COG (conserved oligomeric Golgi) complex component, COG2 Gon7 PF08738.10 gi|530548172|ref|YP_008428708.1| - 0.075 13.1 2.6 0.84 9.8 0.3 2.4 2 0 0 2 2 2 0 Gon7 family HTH_46 PF15977.5 gi|530548172|ref|YP_008428708.1| - 0.076 13.0 1.7 3.4 7.8 0.0 3.2 3 0 0 3 3 2 0 Winged helix-turn-helix DNA binding DASH_Dad1 PF08649.10 gi|530548172|ref|YP_008428708.1| - 0.086 13.0 0.5 0.086 13.0 0.5 4.2 3 2 2 5 5 3 0 DASH complex subunit Dad1 Spc7 PF08317.11 gi|530548172|ref|YP_008428708.1| - 0.098 11.5 20.3 0.058 12.3 11.3 2.4 1 1 1 2 2 2 0 Spc7 kinetochore protein CorA PF01544.18 gi|530548172|ref|YP_008428708.1| - 0.1 11.9 13.8 0.064 12.6 1.9 2.2 1 1 1 2 2 2 0 CorA-like Mg2+ transporter protein HAP1_N PF04849.13 gi|530548172|ref|YP_008428708.1| - 0.1 11.8 13.9 0.022 14.0 7.5 2.0 2 0 0 2 2 2 0 HAP1 N-terminal conserved region DUF1664 PF07889.12 gi|530548172|ref|YP_008428708.1| - 0.11 12.6 19.7 0.79 9.8 1.8 3.2 2 1 0 3 3 3 0 Protein of unknown function (DUF1664) PhaP_Bmeg PF09602.10 gi|530548172|ref|YP_008428708.1| - 0.12 12.3 11.7 0.16 11.9 2.0 3.0 2 1 1 3 3 3 0 Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg) DUF2009 PF09418.10 gi|530548172|ref|YP_008428708.1| - 0.19 10.8 4.3 0.26 10.3 4.0 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF2009) Flagellin_N PF00669.20 gi|530548172|ref|YP_008428708.1| - 0.2 11.8 9.2 4.6 7.4 0.1 3.5 2 1 0 3 3 3 0 Bacterial flagellin N-terminal helical region Cytochrom_B562 PF07361.11 gi|530548172|ref|YP_008428708.1| - 0.28 11.9 8.5 2.7 8.7 0.7 3.6 2 1 1 3 3 3 0 Cytochrome b562 T3SSipB PF16535.5 gi|530548172|ref|YP_008428708.1| - 0.31 11.5 9.8 0.21 12.1 1.7 2.3 1 1 1 2 2 2 0 Type III cell invasion protein SipB APG17 PF04108.12 gi|530548172|ref|YP_008428708.1| - 0.31 10.1 17.0 0.86 8.6 1.9 3.0 1 1 2 3 3 3 0 Autophagy protein Apg17 HisKA PF00512.25 gi|530548172|ref|YP_008428708.1| - 0.37 10.9 10.8 6.8 6.8 0.1 4.4 2 1 0 2 2 2 0 His Kinase A (phospho-acceptor) domain DUF745 PF05335.13 gi|530548172|ref|YP_008428708.1| - 0.41 10.3 18.3 0.56 9.9 3.0 2.8 1 1 2 3 3 3 0 Protein of unknown function (DUF745) Med9 PF07544.13 gi|530548172|ref|YP_008428708.1| - 0.42 10.7 10.2 7.5 6.7 0.2 3.5 2 1 1 3 3 3 0 RNA polymerase II transcription mediator complex subunit 9 TraF_2 PF13729.6 gi|530548172|ref|YP_008428708.1| - 0.47 9.8 5.6 6.9 6.0 0.7 2.5 1 1 1 2 2 2 0 F plasmid transfer operon, TraF, protein DUF4795 PF16043.5 gi|530548172|ref|YP_008428708.1| - 0.49 10.0 16.0 32 4.1 15.4 2.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4795) CK2S PF15011.6 gi|530548172|ref|YP_008428708.1| - 0.49 10.3 5.3 0.63 9.9 0.9 2.8 2 1 0 2 2 2 0 Casein Kinase 2 substrate V_ATPase_I PF01496.19 gi|530548172|ref|YP_008428708.1| - 0.56 8.1 12.3 0.16 9.8 8.0 1.9 1 1 0 1 1 1 0 V-type ATPase 116kDa subunit family DHR10 PF18595.1 gi|530548172|ref|YP_008428708.1| - 0.57 10.2 23.2 3 7.9 1.0 3.8 2 1 1 3 3 3 0 Designed helical repeat protein 10 domain DUF4279 PF14106.6 gi|530548172|ref|YP_008428708.1| - 0.57 10.4 5.1 2.9 8.1 0.1 3.5 1 1 2 4 4 4 0 Domain of unknown function (DUF4279) IL2 PF00715.17 gi|530548172|ref|YP_008428708.1| - 0.58 10.1 7.1 3.5 7.6 0.2 3.2 2 1 1 3 3 3 0 Interleukin 2 Flu_M1_C PF08289.11 gi|530548172|ref|YP_008428708.1| - 0.6 10.4 5.6 1 9.6 0.3 2.7 2 1 0 2 2 2 0 Influenza Matrix protein (M1) C-terminal domain DUF2203 PF09969.9 gi|530548172|ref|YP_008428708.1| - 0.67 10.7 14.6 2.9 8.7 1.5 3.2 1 1 3 4 4 4 0 Uncharacterized conserved protein (DUF2203) eIF3_N PF09440.10 gi|530548172|ref|YP_008428708.1| - 0.72 10.3 12.3 0.25 11.8 1.5 3.0 1 1 1 3 3 3 0 eIF3 subunit 6 N terminal domain T2SSF PF00482.23 gi|530548172|ref|YP_008428708.1| - 0.73 9.8 5.3 0.84 9.6 0.6 2.7 1 1 3 4 4 4 0 Type II secretion system (T2SS), protein F HD_2 PF12917.7 gi|530548172|ref|YP_008428708.1| - 0.78 9.5 8.7 0.79 9.5 5.8 2.2 1 1 2 3 3 3 0 HD containing hydrolase-like enzyme TMPIT PF07851.13 gi|530548172|ref|YP_008428708.1| - 0.82 8.9 15.1 0.31 10.2 3.1 2.9 2 1 1 3 3 3 0 TMPIT-like protein DUF489 PF04356.12 gi|530548172|ref|YP_008428708.1| - 0.86 9.6 7.5 0.2 11.6 2.9 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF489) Prominin PF05478.11 gi|530548172|ref|YP_008428708.1| - 0.92 7.4 12.0 0.26 9.2 6.2 2.0 1 1 1 2 2 2 0 Prominin Prefoldin PF02996.17 gi|530548172|ref|YP_008428708.1| - 0.92 9.4 17.2 1.7 8.6 1.5 4.3 2 1 2 4 4 4 0 Prefoldin subunit Muted PF14942.6 gi|530548172|ref|YP_008428708.1| - 0.92 9.8 17.7 2.2 8.6 11.6 3.0 2 1 0 2 2 2 0 Organelle biogenesis, Muted-like protein Fib_alpha PF08702.10 gi|530548172|ref|YP_008428708.1| - 1.1 9.5 16.2 2.8 8.1 1.9 3.3 2 1 1 3 3 3 0 Fibrinogen alpha/beta chain family TMP_2 PF06791.13 gi|530548172|ref|YP_008428708.1| - 1.1 8.9 6.8 9.3 5.9 0.7 2.8 1 1 2 3 3 3 0 Prophage tail length tape measure protein DUF3837 PF12939.7 gi|530548172|ref|YP_008428708.1| - 1.4 9.4 7.6 1.7 9.1 0.8 3.3 1 1 3 4 4 3 0 Domain of unknown function (DUF3837) Vip3A_N PF12495.8 gi|530548172|ref|YP_008428708.1| - 1.4 8.8 9.7 9 6.2 2.6 2.8 1 1 2 3 3 3 0 Vegetative insecticide protein 3A N terminal CLZ PF16526.5 gi|530548172|ref|YP_008428708.1| - 1.4 9.3 11.2 3.9 7.9 0.8 3.7 2 1 0 3 3 3 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels HMMR_N PF15905.5 gi|530548172|ref|YP_008428708.1| - 1.4 8.3 18.9 0.33 10.4 11.8 2.1 2 0 0 2 2 2 0 Hyaluronan mediated motility receptor N-terminal DASH_Dam1 PF08653.10 gi|530548172|ref|YP_008428708.1| - 1.5 8.7 7.7 25 4.8 0.3 4.3 3 1 0 4 4 3 0 DASH complex subunit Dam1 AATF-Che1 PF13339.6 gi|530548172|ref|YP_008428708.1| - 1.7 9.3 10.4 2.4 8.8 3.1 2.3 1 1 1 2 2 2 0 Apoptosis antagonizing transcription factor ZnuA PF01297.17 gi|530548172|ref|YP_008428708.1| - 1.9 7.9 10.8 1.2 8.5 6.1 2.1 1 1 1 2 2 2 0 Zinc-uptake complex component A periplasmic Phage_GPO PF05929.11 gi|530548172|ref|YP_008428708.1| - 1.9 8.0 13.9 2.4 7.7 8.5 2.7 1 1 2 3 3 3 0 Phage capsid scaffolding protein (GPO) serine peptidase HrpB2 PF09487.10 gi|530548172|ref|YP_008428708.1| - 2 8.9 11.1 0.99 9.9 2.7 3.1 1 1 0 3 3 3 0 Bacterial type III secretion protein (HrpB2) Fzo_mitofusin PF04799.13 gi|530548172|ref|YP_008428708.1| - 2.5 7.6 14.9 0.61 9.6 1.6 3.1 2 1 1 3 3 3 0 fzo-like conserved region TMF_TATA_bd PF12325.8 gi|530548172|ref|YP_008428708.1| - 2.5 8.3 20.7 1.2 9.3 3.0 3.2 2 1 1 3 3 3 0 TATA element modulatory factor 1 TATA binding Rx_N PF18052.1 gi|530548172|ref|YP_008428708.1| - 2.7 8.3 10.3 3.3 8.0 0.4 3.8 1 1 2 3 3 3 0 Rx N-terminal domain BST2 PF16716.5 gi|530548172|ref|YP_008428708.1| - 3 8.5 12.7 3.1 8.4 0.4 3.2 2 1 0 3 3 3 0 Bone marrow stromal antigen 2 Takusan PF04822.13 gi|530548172|ref|YP_008428708.1| - 3.1 7.7 9.4 2.9 7.8 0.8 3.0 3 0 0 3 3 3 0 Takusan Goodbye PF17109.5 gi|530548172|ref|YP_008428708.1| - 3.2 8.2 10.6 32 5.0 0.2 3.3 2 1 2 4 4 4 0 fungal STAND N-terminal Goodbye domain KIP1 PF07765.12 gi|530548172|ref|YP_008428708.1| - 4.1 7.6 11.1 0.72 10.0 0.3 3.5 2 1 0 3 3 3 0 KIP1-like protein AAA_13 PF13166.6 gi|530548172|ref|YP_008428708.1| - 4.7 5.7 21.1 7.8 5.0 21.1 1.4 1 1 0 1 1 1 0 AAA domain Sec8_exocyst PF04048.14 gi|530548172|ref|YP_008428708.1| - 8.3 6.3 16.5 9.6 6.1 1.4 3.0 2 1 1 3 3 3 0 Sec8 exocyst complex component specific domain DUF724 PF05266.14 gi|530548172|ref|YP_008428708.1| - 9.6 6.0 17.7 2.5 7.9 10.1 2.2 1 1 0 2 2 2 0 Protein of unknown function (DUF724) ART PF01129.18 gi|530548173|ref|YP_008428709.1| - 0.12 11.6 0.0 0.15 11.3 0.0 1.1 1 0 0 1 1 1 0 NAD:arginine ADP-ribosyltransferase DUF1464 PF07318.12 gi|530548174|ref|YP_008428710.1| - 2.8e-132 440.8 0.2 3.2e-132 440.7 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1464) Pyr_redox_2 PF07992.14 gi|530548175|ref|YP_008428711.1| - 1.6e-58 198.3 1.3 2.3e-58 197.8 1.3 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|530548175|ref|YP_008428711.1| - 9.7e-22 77.3 8.3 3.4e-16 59.6 3.1 3.7 3 0 0 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|530548175|ref|YP_008428711.1| - 8.1e-21 74.3 0.0 2e-20 73.1 0.0 1.7 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox_3 PF13738.6 gi|530548175|ref|YP_008428711.1| - 1.2e-16 60.9 4.0 2.2e-14 53.5 0.8 2.3 1 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|530548175|ref|YP_008428711.1| - 2.5e-07 29.7 0.9 0.01 14.6 0.0 4.1 3 1 1 4 4 4 1 HI0933-like protein DAO PF01266.24 gi|530548175|ref|YP_008428711.1| - 3.5e-07 30.1 4.9 0.031 13.9 0.0 3.6 2 1 1 3 3 3 3 FAD dependent oxidoreductase NAD_binding_7 PF13241.6 gi|530548175|ref|YP_008428711.1| - 7e-07 29.6 1.1 0.00037 20.9 0.5 2.5 2 0 0 2 2 2 1 Putative NAD(P)-binding Lycopene_cycl PF05834.12 gi|530548175|ref|YP_008428711.1| - 6.2e-05 22.2 0.4 0.014 14.5 0.0 2.5 2 1 0 2 2 2 1 Lycopene cyclase protein NAD_binding_8 PF13450.6 gi|530548175|ref|YP_008428711.1| - 7.6e-05 22.9 0.1 0.0028 17.8 0.0 2.5 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain GIDA PF01134.22 gi|530548175|ref|YP_008428711.1| - 8.3e-05 21.8 4.9 0.017 14.2 1.0 2.9 2 1 2 4 4 4 2 Glucose inhibited division protein A UDPG_MGDP_dh_N PF03721.14 gi|530548175|ref|YP_008428711.1| - 0.0001 21.9 0.2 0.00021 20.9 0.2 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain FAD_binding_2 PF00890.24 gi|530548175|ref|YP_008428711.1| - 0.00011 21.4 1.4 0.095 11.8 0.0 2.8 2 1 0 2 2 2 2 FAD binding domain 3HCDH_N PF02737.18 gi|530548175|ref|YP_008428711.1| - 0.00012 22.0 1.8 0.00019 21.4 0.4 1.9 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TrkA_N PF02254.18 gi|530548175|ref|YP_008428711.1| - 0.00014 22.0 2.9 1.3 9.3 0.3 3.3 2 1 1 3 3 3 1 TrkA-N domain Amino_oxidase PF01593.24 gi|530548175|ref|YP_008428711.1| - 0.00056 19.3 0.0 0.8 8.9 0.1 2.6 1 1 1 3 3 3 2 Flavin containing amine oxidoreductase K_oxygenase PF13434.6 gi|530548175|ref|YP_008428711.1| - 0.0006 19.1 0.1 0.026 13.7 0.0 2.8 2 1 1 3 3 3 1 L-lysine 6-monooxygenase (NADPH-requiring) NAD_binding_9 PF13454.6 gi|530548175|ref|YP_008428711.1| - 0.001 19.1 0.7 0.59 10.1 0.0 3.2 3 1 1 4 4 4 1 FAD-NAD(P)-binding Thi4 PF01946.17 gi|530548175|ref|YP_008428711.1| - 0.003 16.9 1.8 0.17 11.1 0.0 3.1 4 0 0 4 4 4 1 Thi4 family Trp_halogenase PF04820.14 gi|530548175|ref|YP_008428711.1| - 0.0032 16.4 1.0 0.15 10.9 0.1 2.5 2 1 0 2 2 2 1 Tryptophan halogenase NAD_binding_2 PF03446.15 gi|530548175|ref|YP_008428711.1| - 0.01 16.0 0.2 0.043 14.0 0.2 1.9 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase FAD_binding_3 PF01494.19 gi|530548175|ref|YP_008428711.1| - 0.021 14.1 0.5 3.8 6.6 0.1 2.9 3 0 0 3 3 3 0 FAD binding domain F420_oxidored PF03807.17 gi|530548175|ref|YP_008428711.1| - 0.026 15.1 0.5 0.63 10.7 0.2 2.8 2 1 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent Mqo PF06039.15 gi|530548175|ref|YP_008428711.1| - 0.031 12.8 0.0 0.053 12.1 0.0 1.3 1 0 0 1 1 1 0 Malate:quinone oxidoreductase (Mqo) AlaDh_PNT_C PF01262.21 gi|530548175|ref|YP_008428711.1| - 0.032 13.5 4.0 0.67 9.2 0.0 2.5 2 1 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain Sacchrp_dh_NADP PF03435.18 gi|530548175|ref|YP_008428711.1| - 0.033 14.4 0.9 0.46 10.7 0.3 2.3 2 0 0 2 2 2 0 Saccharopine dehydrogenase NADP binding domain 2-Hacid_dh_C PF02826.19 gi|530548175|ref|YP_008428711.1| - 0.035 13.5 0.4 5.6 6.3 0.1 2.5 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.22 gi|530548175|ref|YP_008428711.1| - 0.036 14.9 0.1 0.63 10.9 0.0 2.4 2 0 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold ApbA PF02558.16 gi|530548175|ref|YP_008428711.1| - 0.089 12.4 0.6 0.21 11.3 0.2 1.8 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA Shikimate_DH PF01488.20 gi|530548175|ref|YP_008428711.1| - 0.25 11.4 3.9 0.19 11.8 0.5 2.3 2 1 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase DUF998 PF06197.13 gi|530548176|ref|YP_008428712.1| - 2.3e-10 40.4 17.2 2.8e-10 40.1 17.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF998) tRNA-synt_1 PF00133.22 gi|530548177|ref|YP_008428713.1| - 6.8e-67 226.1 2.2 4.6e-66 223.3 2.2 2.1 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|530548177|ref|YP_008428713.1| - 2.2e-29 102.4 1.5 6.2e-29 100.9 1.5 1.8 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 gi|530548177|ref|YP_008428713.1| - 1.8e-23 82.9 0.7 8.3e-11 41.3 0.1 2.8 3 0 0 3 3 3 2 tRNA synthetases class I (M) tRNA-synt_1e PF01406.19 gi|530548177|ref|YP_008428713.1| - 8.8e-10 38.4 1.2 0.00011 21.7 0.0 2.8 3 0 0 3 3 3 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1_2 PF13603.6 gi|530548177|ref|YP_008428713.1| - 1.2e-09 37.9 0.6 3e-09 36.7 0.0 1.9 2 0 0 2 2 2 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1f PF01921.18 gi|530548177|ref|YP_008428713.1| - 0.0004 19.4 0.5 0.025 13.5 0.0 2.6 3 0 0 3 3 3 1 tRNA synthetases class I (K) tRNA-synt_1d PF00750.19 gi|530548177|ref|YP_008428713.1| - 0.034 13.1 0.0 0.22 10.4 0.0 2.1 2 0 0 2 2 2 0 tRNA synthetases class I (R) Rep_fac_C PF08542.11 gi|530548177|ref|YP_008428713.1| - 0.19 12.2 0.4 12 6.4 0.0 3.6 4 1 0 4 4 4 0 Replication factor C C-terminal domain MFS_1 PF07690.16 gi|530548178|ref|YP_008428714.1| - 1.5e-07 30.7 5.4 1.7e-07 30.5 5.4 1.0 1 0 0 1 1 1 1 Major Facilitator Superfamily PUCC PF03209.15 gi|530548178|ref|YP_008428714.1| - 0.027 13.5 4.8 0.03 13.3 4.8 1.0 1 0 0 1 1 1 0 PUCC protein DUF3561 PF12084.8 gi|530548178|ref|YP_008428714.1| - 3.3 7.8 13.0 0.12 12.3 4.3 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3561) MFS_1 PF07690.16 gi|530548180|ref|YP_008428716.1| - 5.7e-25 88.0 13.0 6.6e-25 87.8 13.0 1.0 1 0 0 1 1 1 1 Major Facilitator Superfamily MFS_3 PF05977.13 gi|530548180|ref|YP_008428716.1| - 9.6e-25 87.0 2.3 1.2e-24 86.7 2.3 1.0 1 0 0 1 1 1 1 Transmembrane secretion effector MFS_2 PF13347.6 gi|530548180|ref|YP_008428716.1| - 1.9e-09 36.6 11.4 2.2e-09 36.4 11.4 1.1 1 0 0 1 1 1 1 MFS/sugar transport protein GCV_H PF01597.19 gi|530548181|ref|YP_008428717.1| - 7.2e-48 161.5 2.3 8.1e-48 161.3 2.3 1.0 1 0 0 1 1 1 1 Glycine cleavage H-protein Biotin_lipoyl PF00364.22 gi|530548181|ref|YP_008428717.1| - 3.6e-08 33.1 1.1 7.1e-08 32.2 1.1 1.5 1 0 0 1 1 1 1 Biotin-requiring enzyme RnfC_N PF13375.6 gi|530548181|ref|YP_008428717.1| - 4e-05 23.5 0.0 4.9e-05 23.2 0.0 1.3 1 0 0 1 1 1 1 RnfC Barrel sandwich hybrid domain Biotin_lipoyl_2 PF13533.6 gi|530548181|ref|YP_008428717.1| - 0.04 13.7 0.1 2.3 8.1 0.0 2.9 2 1 1 3 3 3 0 Biotin-lipoyl like Lactamase_B_2 PF12706.7 gi|530548182|ref|YP_008428718.1| - 0.0063 16.1 0.2 0.037 13.6 0.2 2.0 1 1 0 1 1 1 1 Beta-lactamase superfamily domain RMMBL PF07521.12 gi|530548182|ref|YP_008428718.1| - 0.043 13.8 0.0 0.14 12.1 0.0 1.9 1 0 0 1 1 1 0 Zn-dependent metallo-hydrolase RNA specificity domain ADP_PFK_GK PF04587.15 gi|530548183|ref|YP_008428719.1| - 5e-94 315.3 0.0 5.6e-94 315.1 0.0 1.0 1 0 0 1 1 1 1 ADP-specific Phosphofructokinase/Glucokinase conserved region Osmo_MPGsynth PF09488.10 gi|530548184|ref|YP_008428720.1| - 3.5e-155 516.5 0.1 4e-155 516.3 0.1 1.0 1 0 0 1 1 1 1 Mannosyl-3-phosphoglycerate synthase (osmo_MPGsynth) Hydrolase_3 PF08282.12 gi|530548185|ref|YP_008428721.1| - 5.6e-20 72.2 0.0 1.3e-18 67.6 0.0 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|530548185|ref|YP_008428721.1| - 0.00054 20.4 0.0 0.066 13.6 0.0 2.7 2 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|530548185|ref|YP_008428721.1| - 0.001 19.4 2.5 0.21 11.9 0.4 3.3 2 2 0 2 2 2 2 haloacid dehalogenase-like hydrolase S6PP PF05116.13 gi|530548185|ref|YP_008428721.1| - 0.0041 16.7 0.0 0.24 10.9 0.0 2.2 2 0 0 2 2 2 1 Sucrose-6F-phosphate phosphohydrolase Hydrolase_6 PF13344.6 gi|530548185|ref|YP_008428721.1| - 0.042 14.0 0.0 0.29 11.2 0.0 2.1 2 0 0 2 2 2 0 Haloacid dehalogenase-like hydrolase Cytidylate_kin2 PF13189.6 gi|530548185|ref|YP_008428721.1| - 0.042 14.0 0.0 0.071 13.2 0.0 1.3 1 0 0 1 1 1 0 Cytidylate kinase-like family MannoseP_isomer PF01050.18 gi|530548186|ref|YP_008428722.1| - 7.2e-66 220.7 0.4 1.6e-65 219.6 0.4 1.6 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase NTP_transferase PF00483.23 gi|530548186|ref|YP_008428722.1| - 5.3e-61 206.4 0.2 9.1e-61 205.6 0.1 1.4 2 0 0 2 2 2 1 Nucleotidyl transferase Cupin_2 PF07883.11 gi|530548186|ref|YP_008428722.1| - 6.3e-12 45.0 0.2 2.1e-11 43.4 0.1 2.0 2 0 0 2 2 2 1 Cupin domain NTP_transf_3 PF12804.7 gi|530548186|ref|YP_008428722.1| - 3e-07 31.0 0.0 6.3e-07 29.9 0.0 1.5 1 0 0 1 1 1 1 MobA-like NTP transferase domain AraC_binding PF02311.19 gi|530548186|ref|YP_008428722.1| - 0.00022 21.2 0.0 0.00041 20.2 0.0 1.3 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_3 PF05899.12 gi|530548186|ref|YP_008428722.1| - 0.003 17.2 0.1 0.0098 15.6 0.0 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF861) PGM_PMM_I PF02878.16 gi|530548188|ref|YP_008428724.1| - 4.4e-46 156.0 0.0 1e-45 154.8 0.0 1.7 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.16 gi|530548188|ref|YP_008428724.1| - 4.3e-30 104.4 0.0 9.3e-30 103.3 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.16 gi|530548188|ref|YP_008428724.1| - 3.8e-27 94.7 0.1 7.1e-27 93.9 0.1 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.20 gi|530548188|ref|YP_008428724.1| - 1.4e-14 54.0 0.3 4.2e-14 52.5 0.3 1.7 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain Voltage_CLC PF00654.20 gi|530548189|ref|YP_008428725.1| - 1.1e-81 274.9 39.6 1.1e-81 274.9 39.6 2.0 2 0 0 2 2 2 2 Voltage gated chloride channel CBS PF00571.28 gi|530548189|ref|YP_008428725.1| - 1.6e-14 54.1 0.0 2.2e-06 28.0 0.0 2.6 2 0 0 2 2 2 2 CBS domain Arginase PF00491.21 gi|530548190|ref|YP_008428726.1| - 1.2e-63 215.2 0.0 1.4e-63 215.0 0.0 1.0 1 0 0 1 1 1 1 Arginase family eIF-5a PF01287.20 gi|530548191|ref|YP_008428727.1| - 2.1e-10 40.6 0.6 3.4e-10 39.9 0.6 1.3 1 0 0 1 1 1 1 Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold EFP_N PF08207.12 gi|530548191|ref|YP_008428727.1| - 9.8e-05 22.3 0.0 0.00025 21.0 0.0 1.8 1 0 0 1 1 1 1 Elongation factor P (EF-P) KOW-like domain DNA_pol_B_3 PF08408.10 gi|530548191|ref|YP_008428727.1| - 0.059 13.6 0.0 0.11 12.7 0.0 1.5 1 1 0 1 1 1 0 DNA polymerase family B viral insert Herpes_UL32 PF06070.11 gi|530548191|ref|YP_008428727.1| - 0.14 9.9 0.0 0.17 9.6 0.0 1.0 1 0 0 1 1 1 0 Herpesvirus large structural phosphoprotein UL32 L_protein_N PF15518.6 gi|530548191|ref|YP_008428727.1| - 0.2 11.5 0.6 4.4 7.2 0.6 2.2 2 0 0 2 2 2 0 L protein N-terminus EMG1 PF03587.14 gi|530548192|ref|YP_008428728.1| - 1.5e-49 168.3 0.0 1.7e-49 168.1 0.0 1.0 1 0 0 1 1 1 1 EMG1/NEP1 methyltransferase Sacchrp_dh_C PF16653.5 gi|530548193|ref|YP_008428729.1| - 7.1e-32 111.6 0.0 9.1e-32 111.2 0.0 1.1 1 0 0 1 1 1 1 Saccharopine dehydrogenase C-terminal domain Sacchrp_dh_NADP PF03435.18 gi|530548193|ref|YP_008428729.1| - 3.3e-18 66.2 0.0 5.3e-18 65.5 0.0 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain NAD_binding_10 PF13460.6 gi|530548193|ref|YP_008428729.1| - 5.6e-05 23.1 0.0 0.00011 22.2 0.0 1.5 1 0 0 1 1 1 1 NAD(P)H-binding AlaDh_PNT_C PF01262.21 gi|530548193|ref|YP_008428729.1| - 0.0002 20.7 0.0 0.00034 20.0 0.0 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain F420_oxidored PF03807.17 gi|530548193|ref|YP_008428729.1| - 0.0023 18.5 0.0 0.0067 17.0 0.0 1.9 1 1 1 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent GFO_IDH_MocA PF01408.22 gi|530548193|ref|YP_008428729.1| - 0.0036 18.1 0.0 0.0061 17.4 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold TrkA_N PF02254.18 gi|530548193|ref|YP_008428729.1| - 0.0037 17.5 0.0 0.012 15.9 0.0 1.9 1 1 0 1 1 1 1 TrkA-N domain Shikimate_DH PF01488.20 gi|530548193|ref|YP_008428729.1| - 0.011 15.8 0.0 0.026 14.6 0.0 1.6 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase ApbA PF02558.16 gi|530548193|ref|YP_008428729.1| - 0.011 15.4 0.0 0.021 14.5 0.0 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Peripla_BP_6 PF13458.6 gi|530548193|ref|YP_008428729.1| - 0.098 12.3 0.0 0.14 11.8 0.0 1.2 1 0 0 1 1 1 0 Periplasmic binding protein Metallophos_2 PF12850.7 gi|530548194|ref|YP_008428730.1| - 1.3e-07 31.9 0.0 2e-07 31.4 0.0 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|530548194|ref|YP_008428730.1| - 1.9e-07 31.8 0.0 5.7e-07 30.2 0.0 1.7 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase YqgF PF14639.6 gi|530548194|ref|YP_008428730.1| - 0.068 13.0 0.1 0.1 12.4 0.1 1.2 1 0 0 1 1 1 0 Holliday-junction resolvase-like of SPT6 LUD_dom PF02589.15 gi|530548194|ref|YP_008428730.1| - 0.11 12.2 0.0 0.18 11.5 0.0 1.3 1 0 0 1 1 1 0 LUD domain Glyco_transf_9 PF01075.17 gi|530548194|ref|YP_008428730.1| - 0.16 11.3 0.0 0.23 10.7 0.0 1.2 1 0 0 1 1 1 0 Glycosyltransferase family 9 (heptosyltransferase) Methyltr_RsmB-F PF01189.17 gi|530548196|ref|YP_008428732.1| - 2.3e-58 197.2 0.0 2.8e-58 196.9 0.0 1.1 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F Methyltr_RsmF_N PF17125.5 gi|530548196|ref|YP_008428732.1| - 4.9e-20 71.8 0.0 1.3e-19 70.5 0.0 1.7 1 0 0 1 1 1 1 N-terminal domain of 16S rRNA methyltransferase RsmF FtsJ PF01728.19 gi|530548196|ref|YP_008428732.1| - 7.6e-07 29.4 0.0 1.2e-06 28.8 0.0 1.2 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_31 PF13847.6 gi|530548196|ref|YP_008428732.1| - 1.6e-06 28.0 0.0 2.4e-06 27.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.18 gi|530548196|ref|YP_008428732.1| - 0.058 13.1 0.0 2.8 7.6 0.0 2.4 1 1 1 2 2 2 0 Putative RNA methylase family UPF0020 DUF2431 PF10354.9 gi|530548196|ref|YP_008428732.1| - 0.13 12.5 0.0 0.2 11.9 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF2431) POR PF01558.18 gi|530548196|ref|YP_008428732.1| - 0.2 11.7 0.0 0.35 10.9 0.0 1.4 1 0 0 1 1 1 0 Pyruvate ferredoxin/flavodoxin oxidoreductase RPAP3_C PF13877.6 gi|530548197|ref|YP_008428733.1| - 0.07 13.7 0.0 0.15 12.6 0.0 1.6 1 0 0 1 1 1 0 Potential Monad-binding region of RPAP3 DUF3794 PF12673.7 gi|530548197|ref|YP_008428733.1| - 0.14 12.5 0.7 1.8 8.9 0.1 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF3794) FeS_assembly_P PF01883.19 gi|530548198|ref|YP_008428734.1| - 5.7e-05 23.2 0.3 0.0002 21.4 0.2 1.9 1 1 1 2 2 2 1 Iron-sulfur cluster assembly protein ArsA_ATPase PF02374.15 gi|530548199|ref|YP_008428735.1| - 1.3e-42 146.1 3.8 1.7e-42 145.6 3.8 1.1 1 0 0 1 1 1 1 Anion-transporting ATPase AAA_31 PF13614.6 gi|530548199|ref|YP_008428735.1| - 0.052 13.5 0.1 0.09 12.7 0.1 1.4 1 0 0 1 1 1 0 AAA domain FlaC_arch PF05377.11 gi|530548199|ref|YP_008428735.1| - 0.25 11.7 0.2 0.25 11.7 0.2 3.2 3 0 0 3 3 3 0 Flagella accessory protein C (FlaC) CAMSAP_CC1 PF17095.5 gi|530548199|ref|YP_008428735.1| - 1.1 9.2 8.5 1.3 8.9 2.3 2.5 2 0 0 2 2 2 0 Spectrin-binding region of Ca2+-Calmodulin ArsA_ATPase PF02374.15 gi|530548200|ref|YP_008428736.1| - 5.6e-08 32.3 0.3 6.5e-08 32.1 0.3 1.0 1 0 0 1 1 1 1 Anion-transporting ATPase CbiA PF01656.23 gi|530548200|ref|YP_008428736.1| - 9e-05 22.5 0.5 0.00011 22.3 0.5 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|530548200|ref|YP_008428736.1| - 0.0002 21.3 0.2 0.00023 21.1 0.2 1.1 1 0 0 1 1 1 1 AAA domain ParA PF10609.9 gi|530548200|ref|YP_008428736.1| - 0.001 18.6 0.2 0.0012 18.4 0.2 1.0 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase NB-ARC PF00931.22 gi|530548200|ref|YP_008428736.1| - 0.014 14.6 0.0 0.014 14.6 0.0 1.1 1 0 0 1 1 1 0 NB-ARC domain Fer4_NifH PF00142.18 gi|530548200|ref|YP_008428736.1| - 0.026 14.0 0.1 0.03 13.8 0.1 1.1 1 0 0 1 1 1 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family SRP54 PF00448.22 gi|530548200|ref|YP_008428736.1| - 0.042 13.5 0.0 0.044 13.4 0.0 1.0 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain NACHT PF05729.12 gi|530548200|ref|YP_008428736.1| - 0.062 13.2 0.0 0.07 13.1 0.0 1.1 1 0 0 1 1 1 0 NACHT domain AAA_25 PF13481.6 gi|530548200|ref|YP_008428736.1| - 0.076 12.6 0.0 0.076 12.6 0.0 1.0 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|530548200|ref|YP_008428736.1| - 0.12 12.8 0.0 0.12 12.8 0.0 1.1 1 0 0 1 1 1 0 AAA ATPase domain DBI_PRT PF02277.17 gi|530548200|ref|YP_008428736.1| - 0.13 11.5 0.0 0.15 11.3 0.0 1.0 1 0 0 1 1 1 0 Phosphoribosyltransferase CstA PF02554.14 gi|530548203|ref|YP_008428739.1| - 1.6e-108 363.0 28.6 1.6e-108 363.0 28.6 2.1 2 0 0 2 2 2 1 Carbon starvation protein CstA CstA_5TM PF13722.6 gi|530548203|ref|YP_008428739.1| - 5.8e-29 100.8 14.6 5.8e-29 100.8 14.6 3.1 3 0 0 3 3 3 1 5TM C-terminal transporter carbon starvation CstA PYC_OADA PF02436.18 gi|530548204|ref|YP_008428740.1| - 1e-60 204.9 1.4 2.2e-60 203.8 0.2 2.1 3 0 0 3 3 3 1 Conserved carboxylase domain HMGL-like PF00682.19 gi|530548204|ref|YP_008428740.1| - 1.7e-39 136.0 0.0 2.2e-39 135.6 0.0 1.1 1 0 0 1 1 1 1 HMGL-like Biotin_lipoyl PF00364.22 gi|530548204|ref|YP_008428740.1| - 1.6e-21 75.9 0.7 1.6e-21 75.9 0.7 2.2 3 0 0 3 3 3 1 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.6 gi|530548204|ref|YP_008428740.1| - 9.6e-12 44.6 0.7 0.00012 21.8 0.1 2.6 1 1 1 2 2 2 2 Biotin-lipoyl like HlyD_3 PF13437.6 gi|530548204|ref|YP_008428740.1| - 0.0005 20.7 0.4 0.4 11.4 0.0 2.6 2 0 0 2 2 2 2 HlyD family secretion protein HlyD_D23 PF16576.5 gi|530548204|ref|YP_008428740.1| - 0.0076 15.5 0.1 0.53 9.5 0.0 2.3 1 1 1 2 2 2 1 Barrel-sandwich domain of CusB or HlyD membrane-fusion RnfC_N PF13375.6 gi|530548204|ref|YP_008428740.1| - 0.012 15.6 0.3 0.95 9.5 0.0 2.7 1 1 1 2 2 2 0 RnfC Barrel sandwich hybrid domain PTS_EIIA_1 PF00358.20 gi|530548204|ref|YP_008428740.1| - 0.047 13.5 0.4 9.9 5.9 0.0 2.8 2 1 1 3 3 3 0 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 NQRA PF05896.11 gi|530548204|ref|YP_008428740.1| - 0.13 11.6 0.3 2.8 7.3 0.1 2.1 1 1 1 2 2 2 0 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) Ribosomal_L12_N PF16320.5 gi|530548204|ref|YP_008428740.1| - 1 9.1 0.0 1 9.1 0.0 2.9 2 0 0 2 2 2 0 Ribosomal protein L7/L12 dimerisation domain DeoC PF01791.9 gi|530548205|ref|YP_008428741.1| - 1.3e-34 119.9 0.0 1.5e-34 119.7 0.0 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase PucR PF07905.11 gi|530548205|ref|YP_008428741.1| - 0.045 14.0 0.0 3 8.2 0.0 2.4 2 0 0 2 2 2 0 Purine catabolism regulatory protein-like family Peripla_BP_4 PF13407.6 gi|530548205|ref|YP_008428741.1| - 0.084 12.4 0.0 0.15 11.6 0.0 1.4 1 0 0 1 1 1 0 Periplasmic binding protein domain BPL_LplA_LipB PF03099.19 gi|530548206|ref|YP_008428742.1| - 1.6e-20 73.3 0.0 2.6e-20 72.6 0.0 1.3 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family BPL_C PF02237.17 gi|530548206|ref|YP_008428742.1| - 6.1e-12 45.2 0.6 1.2e-11 44.4 0.6 1.5 1 0 0 1 1 1 1 Biotin protein ligase C terminal domain BPL_LplA_LipB_2 PF16917.5 gi|530548206|ref|YP_008428742.1| - 0.015 14.9 0.0 0.017 14.7 0.0 1.3 1 0 0 1 1 1 0 Biotin/lipoate A/B protein ligase family SDF PF00375.18 gi|530548207|ref|YP_008428743.1| - 1.8e-56 191.8 17.8 2e-56 191.7 17.8 1.0 1 0 0 1 1 1 1 Sodium:dicarboxylate symporter family SDF PF00375.18 gi|530548208|ref|YP_008428744.1| - 1.2e-62 212.2 15.9 1.3e-62 212.0 15.9 1.0 1 0 0 1 1 1 1 Sodium:dicarboxylate symporter family Ubiquitin_2 PF14560.6 gi|530548209|ref|YP_008428745.1| - 0.012 16.1 0.1 2.7 8.5 0.1 2.4 2 0 0 2 2 2 0 Ubiquitin-like domain Utp14 PF04615.13 gi|530548209|ref|YP_008428745.1| - 0.24 9.9 0.3 0.32 9.5 0.3 1.1 1 0 0 1 1 1 0 Utp14 protein tRNA-synt_2c PF01411.19 gi|530548210|ref|YP_008428746.1| - 2.9e-12 45.9 0.0 3.9e-12 45.5 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (A) tRNA_SAD PF07973.14 gi|530548210|ref|YP_008428746.1| - 1.6e-11 44.1 1.0 3.8e-11 42.9 1.0 1.6 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain Reg_prop PF07494.11 gi|530548210|ref|YP_008428746.1| - 0.14 12.5 0.1 0.32 11.4 0.1 1.6 1 0 0 1 1 1 0 Two component regulator propeller Ntox33 PF15533.6 gi|530548210|ref|YP_008428746.1| - 0.34 11.4 4.5 0.41 11.2 0.1 3.0 3 1 1 4 4 4 0 Bacterial toxin 33 DUF4352 PF11611.8 gi|530548211|ref|YP_008428747.1| - 1.1e-09 38.6 0.2 1.4e-08 35.0 0.0 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF4352) Mucin PF01456.17 gi|530548211|ref|YP_008428747.1| - 0.078 13.0 26.2 0.12 12.4 26.2 1.2 1 0 0 1 1 1 0 Mucin-like glycoprotein DGF-1_4 PF11024.8 gi|530548211|ref|YP_008428747.1| - 6.7 7.6 26.8 13 6.7 26.8 1.4 1 0 0 1 1 1 0 Dispersed gene family protein 1 of Trypanosoma cruzi region 4 tRNA-synt_1b PF00579.25 gi|530548212|ref|YP_008428748.1| - 9.3e-44 149.9 0.4 3.5e-43 148.0 0.4 1.7 1 1 0 1 1 1 1 tRNA synthetases class I (W and Y) ABC_transp_aux PF09822.9 gi|530548213|ref|YP_008428749.1| - 0.0001 21.9 0.0 0.00024 20.7 0.0 1.6 2 0 0 2 2 2 1 ABC-type uncharacterized transport system SBP_bac_8 PF13416.6 gi|530548214|ref|YP_008428750.1| - 9.4e-20 71.6 1.3 9.4e-20 71.6 1.3 1.6 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 gi|530548214|ref|YP_008428750.1| - 4e-18 65.7 0.4 6.8e-18 65.0 0.4 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|530548214|ref|YP_008428750.1| - 2.1e-13 50.9 3.3 4.3e-13 49.9 3.3 1.5 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 gi|530548214|ref|YP_008428750.1| - 0.0052 16.6 0.1 0.016 15.0 0.0 1.9 2 1 0 2 2 2 1 Bacterial extracellular solute-binding protein BPD_transp_1 PF00528.22 gi|530548215|ref|YP_008428751.1| - 1.3e-24 87.0 36.5 3.4e-14 53.0 18.1 4.1 3 2 1 4 4 4 2 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 gi|530548216|ref|YP_008428752.1| - 2.6e-34 118.7 0.0 4.3e-34 118.0 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|530548216|ref|YP_008428752.1| - 1.9e-07 31.2 0.1 0.0068 16.2 0.0 2.3 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system TOBE_2 PF08402.10 gi|530548216|ref|YP_008428752.1| - 3.6e-07 30.2 0.2 3.5e-06 27.1 0.0 2.6 3 0 0 3 3 3 1 TOBE domain Myosin_N PF02736.19 gi|530548216|ref|YP_008428752.1| - 0.0015 18.3 0.2 0.0069 16.2 0.2 2.2 1 0 0 1 1 1 1 Myosin N-terminal SH3-like domain Rad17 PF03215.15 gi|530548216|ref|YP_008428752.1| - 0.0019 18.1 0.0 0.0029 17.6 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_25 PF13481.6 gi|530548216|ref|YP_008428752.1| - 0.016 14.8 0.0 1.1 8.8 0.0 2.4 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.6 gi|530548216|ref|YP_008428752.1| - 0.061 13.1 0.0 0.15 11.8 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|530548216|ref|YP_008428752.1| - 0.08 13.4 0.0 0.18 12.3 0.0 1.7 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|530548216|ref|YP_008428752.1| - 0.082 12.8 0.0 0.32 10.9 0.0 1.9 2 0 0 2 2 2 0 RsgA GTPase VirE PF05272.11 gi|530548216|ref|YP_008428752.1| - 0.082 12.6 0.0 0.21 11.3 0.0 1.6 1 0 0 1 1 1 0 Virulence-associated protein E OB_MalK PF17912.1 gi|530548216|ref|YP_008428752.1| - 0.094 13.6 0.1 0.32 11.9 0.1 1.9 1 0 0 1 1 1 0 MalK OB fold domain AAA_22 PF13401.6 gi|530548216|ref|YP_008428752.1| - 0.1 12.9 1.3 0.55 10.5 1.3 2.1 1 1 0 1 1 1 0 AAA domain AAA PF00004.29 gi|530548216|ref|YP_008428752.1| - 0.15 12.5 0.0 0.71 10.3 0.0 2.0 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) DUF447 PF04289.12 gi|530548217|ref|YP_008428753.1| - 4.1e-29 101.6 0.0 4.8e-29 101.4 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF447) Metallophos PF00149.28 gi|530548218|ref|YP_008428754.1| - 1.4e-13 51.8 3.4 2.6e-13 51.0 3.4 1.5 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|530548218|ref|YP_008428754.1| - 8.4e-08 32.6 0.1 2.1e-07 31.3 0.1 1.7 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Mrr_cat PF04471.12 gi|530548220|ref|YP_008428756.1| - 5.9e-13 48.8 0.1 1.5e-12 47.5 0.1 1.8 1 0 0 1 1 1 1 Restriction endonuclease CitX PF03802.14 gi|530548220|ref|YP_008428756.1| - 0.061 13.1 0.1 0.18 11.6 0.1 1.8 1 0 0 1 1 1 0 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase PGK PF00162.19 gi|530548221|ref|YP_008428757.1| - 3.7e-109 365.2 0.0 4.2e-109 364.9 0.0 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase CheD PF03975.13 gi|530548221|ref|YP_008428757.1| - 0.13 12.4 1.3 4.1 7.6 0.0 3.6 4 2 2 6 6 6 0 CheD chemotactic sensory transduction ABC2_membrane PF01061.24 gi|530548222|ref|YP_008428758.1| - 1.5e-41 142.1 17.7 1.5e-41 142.1 17.7 1.5 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|530548222|ref|YP_008428758.1| - 1.3e-15 57.3 18.3 1.3e-15 57.3 18.3 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC_tran PF00005.27 gi|530548223|ref|YP_008428759.1| - 4.8e-34 117.8 0.0 6.9e-34 117.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|530548223|ref|YP_008428759.1| - 2.3e-10 40.8 0.9 5.2e-07 29.8 0.1 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|530548223|ref|YP_008428759.1| - 2.5e-08 34.5 0.0 5.4e-08 33.5 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_15 PF13175.6 gi|530548223|ref|YP_008428759.1| - 1.4e-05 25.0 0.1 0.15 11.7 0.1 2.1 1 1 1 2 2 2 2 AAA ATPase domain AAA_23 PF13476.6 gi|530548223|ref|YP_008428759.1| - 0.0014 19.1 0.4 0.0023 18.5 0.4 1.5 1 1 0 1 1 1 1 AAA domain SRP54 PF00448.22 gi|530548223|ref|YP_008428759.1| - 0.003 17.2 0.3 0.005 16.5 0.3 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain AAA PF00004.29 gi|530548223|ref|YP_008428759.1| - 0.0034 17.8 0.2 0.04 14.3 0.2 2.5 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.6 gi|530548223|ref|YP_008428759.1| - 0.0039 16.9 0.1 0.0072 16.1 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_27 PF13514.6 gi|530548223|ref|YP_008428759.1| - 0.009 15.6 0.1 0.018 14.6 0.1 1.4 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|530548223|ref|YP_008428759.1| - 0.043 13.3 0.0 0.26 10.7 0.0 1.9 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain Rad17 PF03215.15 gi|530548223|ref|YP_008428759.1| - 0.12 12.3 0.0 0.15 12.0 0.0 1.2 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_30 PF13604.6 gi|530548223|ref|YP_008428759.1| - 0.14 11.9 0.1 0.3 10.8 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_13 PF13166.6 gi|530548223|ref|YP_008428759.1| - 0.18 10.4 0.0 2.1 6.9 0.0 2.0 2 0 0 2 2 2 0 AAA domain PadR PF03551.14 gi|530548224|ref|YP_008428760.1| - 3.8e-19 68.4 1.5 7.7e-19 67.4 0.5 2.0 2 0 0 2 2 2 1 Transcriptional regulator PadR-like family RTP PF02334.16 gi|530548224|ref|YP_008428760.1| - 0.00026 21.6 0.2 0.0032 18.1 0.1 2.1 1 1 1 2 2 2 1 Replication terminator protein DUF4364 PF14277.6 gi|530548224|ref|YP_008428760.1| - 0.00041 20.1 0.5 0.00073 19.3 0.2 1.5 1 1 1 2 2 2 1 Domain of unknown function (DUF4364) HTH_45 PF14947.6 gi|530548224|ref|YP_008428760.1| - 0.0013 18.7 0.1 0.0026 17.7 0.1 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_34 PF13601.6 gi|530548224|ref|YP_008428760.1| - 0.0019 18.4 0.0 0.0039 17.3 0.0 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain HsdM_N PF12161.8 gi|530548224|ref|YP_008428760.1| - 0.0031 18.1 0.4 0.0047 17.6 0.4 1.2 1 0 0 1 1 1 1 HsdM N-terminal domain TrmB PF01978.19 gi|530548224|ref|YP_008428760.1| - 0.0047 16.8 0.0 0.015 15.2 0.0 1.8 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB DUF1495 PF07381.11 gi|530548224|ref|YP_008428760.1| - 0.0077 16.0 0.1 0.022 14.6 0.1 1.7 1 0 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) Mrr_N PF14338.6 gi|530548224|ref|YP_008428760.1| - 0.0084 16.2 1.8 0.13 12.4 0.2 2.8 3 0 0 3 3 3 1 Mrr N-terminal domain HTH_5 PF01022.20 gi|530548224|ref|YP_008428760.1| - 0.022 14.6 0.0 0.18 11.7 0.0 2.3 1 1 0 1 1 1 0 Bacterial regulatory protein, arsR family Imm6 PF14434.6 gi|530548224|ref|YP_008428760.1| - 0.023 14.6 0.1 0.048 13.6 0.2 1.4 1 1 1 2 2 2 0 Immunity protein Imm6 DUF2207 PF09972.9 gi|530548224|ref|YP_008428760.1| - 0.025 13.4 0.1 0.028 13.2 0.1 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) Stork_head PF10264.9 gi|530548224|ref|YP_008428760.1| - 0.039 14.1 0.0 0.29 11.3 0.0 2.1 2 0 0 2 2 2 0 Winged helix Storkhead-box1 domain Gp-FAR-1 PF05823.12 gi|530548224|ref|YP_008428760.1| - 0.044 14.1 1.0 0.066 13.6 1.0 1.2 1 0 0 1 1 1 0 Nematode fatty acid retinoid binding protein (Gp-FAR-1) HTH_27 PF13463.6 gi|530548224|ref|YP_008428760.1| - 0.058 13.9 0.0 0.13 12.8 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF3106 PF11304.8 gi|530548224|ref|YP_008428760.1| - 0.12 12.9 0.7 0.18 12.3 0.7 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3106) CDC48_2 PF02933.17 gi|530548225|ref|YP_008428761.1| - 1.3e-07 31.2 0.1 3.2e-07 30.0 0.1 1.6 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), domain 2 Rav1p_C PF12234.8 gi|530548225|ref|YP_008428761.1| - 0.035 12.5 0.1 0.043 12.2 0.1 1.0 1 0 0 1 1 1 0 RAVE protein 1 C terminal DUF2375 PF09558.10 gi|530548225|ref|YP_008428761.1| - 0.042 13.9 0.3 0.12 12.4 0.1 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2375) DUF3006 PF11213.8 gi|530548225|ref|YP_008428761.1| - 0.046 13.9 4.3 0.35 11.1 0.8 2.7 2 1 0 2 2 2 0 Protein of unknown function (DUF3006) HhH-GPD PF00730.25 gi|530548226|ref|YP_008428762.1| - 2.1e-17 63.5 0.0 3.8e-17 62.7 0.0 1.4 2 0 0 2 2 2 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.23 gi|530548226|ref|YP_008428762.1| - 2.3e-08 33.5 0.0 5.3e-08 32.3 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix motif EndIII_4Fe-2S PF10576.9 gi|530548226|ref|YP_008428762.1| - 6.8e-05 23.1 7.0 0.00011 22.4 7.0 1.4 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III HHH_2 PF12826.7 gi|530548226|ref|YP_008428762.1| - 0.0019 18.3 0.0 0.77 9.9 0.0 2.3 2 0 0 2 2 2 2 Helix-hairpin-helix motif DUF2400 PF09674.10 gi|530548226|ref|YP_008428762.1| - 0.048 13.6 0.0 0.12 12.3 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2400) HHH_3 PF12836.7 gi|530548226|ref|YP_008428762.1| - 0.096 13.0 0.0 0.83 10.0 0.0 2.3 2 0 0 2 2 2 0 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|530548226|ref|YP_008428762.1| - 0.11 13.1 0.1 1.5 9.4 0.0 2.7 3 0 0 3 3 3 0 Helix-hairpin-helix domain AIM24 PF01987.17 gi|530548227|ref|YP_008428763.1| - 2.6e-64 216.7 0.1 2.9e-64 216.6 0.1 1.0 1 0 0 1 1 1 1 Mitochondrial biogenesis AIM24 AP_endonuc_2 PF01261.24 gi|530548228|ref|YP_008428764.1| - 7.7e-30 103.9 0.0 9.2e-30 103.7 0.0 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel DUF692 PF05114.13 gi|530548228|ref|YP_008428764.1| - 0.00014 21.2 0.1 0.00025 20.4 0.1 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF692) Succ_CoA_lig PF13607.6 gi|530548229|ref|YP_008428765.1| - 1.2e-56 190.3 6.6 1.7e-55 186.6 0.8 3.0 4 0 0 4 4 4 2 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|530548229|ref|YP_008428765.1| - 1.7e-28 99.4 0.8 1.2e-26 93.5 0.0 3.1 3 0 0 3 3 3 1 CoA binding domain CoA_binding PF02629.19 gi|530548229|ref|YP_008428765.1| - 8.5e-16 58.4 3.3 9.4e-16 58.3 0.6 2.4 2 0 0 2 2 2 1 CoA binding domain Ligase_CoA PF00549.19 gi|530548229|ref|YP_008428765.1| - 0.0049 16.7 0.0 0.017 15.0 0.0 1.8 1 0 0 1 1 1 1 CoA-ligase B12-binding PF02310.19 gi|530548229|ref|YP_008428765.1| - 0.0054 16.8 0.2 0.17 11.9 0.0 3.1 2 1 1 3 3 3 1 B12 binding domain Asparaginase_C PF17763.1 gi|530548229|ref|YP_008428765.1| - 0.0088 16.3 0.2 0.11 12.7 0.0 2.7 3 0 0 3 3 3 1 Glutaminase/Asparaginase C-terminal domain GFO_IDH_MocA PF01408.22 gi|530548229|ref|YP_008428765.1| - 0.072 13.9 0.7 1.4 9.8 0.0 2.6 2 1 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold ATP-grasp_5 PF13549.6 gi|530548230|ref|YP_008428766.1| - 7.3e-80 267.6 0.1 8.3e-80 267.4 0.1 1.0 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_2 PF08442.10 gi|530548230|ref|YP_008428766.1| - 3e-05 23.7 0.1 6.4e-05 22.6 0.1 1.6 1 1 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.17 gi|530548230|ref|YP_008428766.1| - 0.0035 16.9 0.0 0.0062 16.1 0.0 1.6 1 1 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain DUF4390 PF14334.6 gi|530548230|ref|YP_008428766.1| - 0.071 12.5 0.0 0.47 9.9 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4390) ATP-grasp PF02222.22 gi|530548230|ref|YP_008428766.1| - 0.13 11.8 0.0 0.23 11.0 0.0 1.4 1 0 0 1 1 1 0 ATP-grasp domain SnoaL PF07366.12 gi|530548231|ref|YP_008428767.1| - 2.4e-39 134.0 0.1 2.8e-39 133.8 0.1 1.0 1 0 0 1 1 1 1 SnoaL-like polyketide cyclase SnoaL_2 PF12680.7 gi|530548231|ref|YP_008428767.1| - 8.4e-25 87.4 0.2 1e-24 87.1 0.2 1.0 1 0 0 1 1 1 1 SnoaL-like domain Lipoprotein_15 PF03640.15 gi|530548231|ref|YP_008428767.1| - 0.013 15.0 0.0 0.024 14.2 0.0 1.5 1 0 0 1 1 1 0 Secreted repeat of unknown function EcoEI_R_C PF08463.10 gi|530548231|ref|YP_008428767.1| - 0.017 15.2 0.0 0.063 13.4 0.0 1.8 1 1 1 2 2 2 0 EcoEI R protein C-terminal Spo0A_C PF08769.11 gi|530548231|ref|YP_008428767.1| - 0.018 15.1 0.1 0.034 14.2 0.1 1.5 1 0 0 1 1 1 0 Sporulation initiation factor Spo0A C terminal DUF2358 PF10184.9 gi|530548231|ref|YP_008428767.1| - 0.031 14.6 0.0 0.04 14.2 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2358) Lactamase_B PF00753.27 gi|530548233|ref|YP_008428769.1| - 0.00035 20.6 0.1 0.00041 20.4 0.1 1.0 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.6 gi|530548233|ref|YP_008428769.1| - 0.0013 18.6 0.0 0.0013 18.6 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|530548233|ref|YP_008428769.1| - 0.0019 17.7 0.0 0.0019 17.7 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Radical_SAM PF04055.21 gi|530548236|ref|YP_008428772.1| - 3.3e-23 82.9 0.2 5.5e-23 82.2 0.2 1.4 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|530548236|ref|YP_008428772.1| - 1.1e-08 35.4 0.0 2.1e-08 34.5 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|530548236|ref|YP_008428772.1| - 2e-06 27.9 0.0 4.6e-06 26.8 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain PqqD PF05402.12 gi|530548237|ref|YP_008428773.1| - 0.0032 17.7 0.0 0.0055 17.0 0.0 1.4 1 0 0 1 1 1 1 Coenzyme PQQ synthesis protein D (PqqD) bPH_5 PF10882.8 gi|530548238|ref|YP_008428774.1| - 4.1e-05 23.6 0.1 9e-05 22.5 0.1 1.6 1 1 1 2 2 2 1 Bacterial PH domain ABC2_membrane_2 PF12679.7 gi|530548239|ref|YP_008428775.1| - 3.6e-08 33.0 22.9 5.3e-08 32.5 22.9 1.3 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|530548239|ref|YP_008428775.1| - 1.3e-07 31.1 30.2 1.3e-07 31.1 30.2 2.0 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|530548239|ref|YP_008428775.1| - 0.0013 18.3 27.8 0.0013 18.3 27.8 1.8 2 0 0 2 2 2 1 ABC-2 family transporter protein PsaL PF02605.15 gi|530548239|ref|YP_008428775.1| - 0.18 11.5 2.4 1.1 8.9 0.3 2.4 1 1 1 2 2 2 0 Photosystem I reaction centre subunit XI ABC_tran PF00005.27 gi|530548240|ref|YP_008428776.1| - 9.9e-28 97.4 0.0 2.5e-27 96.1 0.0 1.6 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 gi|530548240|ref|YP_008428776.1| - 5.1e-11 42.9 1.9 4.6e-05 23.4 0.2 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|530548240|ref|YP_008428776.1| - 8e-05 23.2 0.7 8e-05 23.2 0.7 2.1 2 1 0 3 3 3 1 AAA domain AAA_15 PF13175.6 gi|530548240|ref|YP_008428776.1| - 0.00095 19.0 0.1 0.006 16.3 0.0 2.1 1 1 0 1 1 1 1 AAA ATPase domain AAA_27 PF13514.6 gi|530548240|ref|YP_008428776.1| - 0.0045 16.6 0.0 0.0074 15.9 0.0 1.3 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|530548240|ref|YP_008428776.1| - 0.018 14.4 0.1 0.22 10.9 0.0 2.2 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_30 PF13604.6 gi|530548240|ref|YP_008428776.1| - 0.033 13.9 0.1 0.055 13.2 0.1 1.5 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|530548240|ref|YP_008428776.1| - 0.041 13.6 0.1 0.075 12.8 0.1 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain SRP54 PF00448.22 gi|530548240|ref|YP_008428776.1| - 0.085 12.5 0.0 0.19 11.3 0.0 1.6 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Zeta_toxin PF06414.12 gi|530548240|ref|YP_008428776.1| - 0.11 11.8 0.0 0.22 10.8 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin AAA PF00004.29 gi|530548240|ref|YP_008428776.1| - 0.12 12.8 0.0 0.74 10.2 0.0 2.3 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.6 gi|530548240|ref|YP_008428776.1| - 0.12 12.6 0.0 0.35 11.1 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.6 gi|530548240|ref|YP_008428776.1| - 0.12 12.6 0.1 1.6 9.0 0.0 2.3 2 0 0 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 gi|530548240|ref|YP_008428776.1| - 0.13 12.2 0.5 0.56 10.1 0.0 2.0 2 0 0 2 2 2 0 RsgA GTPase AAA_19 PF13245.6 gi|530548240|ref|YP_008428776.1| - 0.16 12.3 0.2 0.93 9.8 0.1 2.1 2 0 0 2 2 2 0 AAA domain Peptidase_M16_M PF16187.5 gi|530548240|ref|YP_008428776.1| - 0.21 10.9 0.6 0.62 9.3 0.0 2.0 3 0 0 3 3 3 0 Middle or third domain of peptidase_M16 MFS_1 PF07690.16 gi|530548241|ref|YP_008428777.1| - 1.2e-26 93.5 27.7 1.6e-26 93.1 27.7 1.1 1 0 0 1 1 1 1 Major Facilitator Superfamily MFS_3 PF05977.13 gi|530548241|ref|YP_008428777.1| - 3.2e-07 29.1 4.5 3.8e-07 28.9 4.5 1.0 1 0 0 1 1 1 1 Transmembrane secretion effector Sugar_tr PF00083.24 gi|530548241|ref|YP_008428777.1| - 2.5e-06 26.6 15.7 3.7e-06 26.1 15.7 1.2 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1_like PF12832.7 gi|530548241|ref|YP_008428777.1| - 0.00069 18.6 12.7 0.0024 16.8 11.6 2.2 1 1 1 2 2 2 1 MFS_1 like family Folate_carrier PF01770.18 gi|530548241|ref|YP_008428777.1| - 0.006 15.4 4.9 0.0091 14.8 4.9 1.3 1 0 0 1 1 1 1 Reduced folate carrier TraA PF05513.11 gi|530548241|ref|YP_008428777.1| - 0.21 12.0 2.9 1.4 9.2 2.9 2.2 1 1 0 1 1 1 0 TraA DUF45 PF01863.17 gi|530548242|ref|YP_008428778.1| - 1.4e-46 159.1 1.1 1.8e-45 155.6 1.1 2.0 1 1 0 1 1 1 1 Protein of unknown function DUF45 WLM PF08325.10 gi|530548242|ref|YP_008428778.1| - 0.05 13.7 0.1 0.092 12.8 0.1 1.3 1 0 0 1 1 1 0 WLM domain Lactamase_B_2 PF12706.7 gi|530548243|ref|YP_008428779.1| - 3.7e-24 85.3 0.2 4.6e-24 85.1 0.2 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|530548243|ref|YP_008428779.1| - 2.4e-10 40.7 1.3 4.8e-10 39.8 1.3 1.6 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.6 gi|530548243|ref|YP_008428779.1| - 4e-06 26.8 0.1 6.1e-06 26.2 0.1 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain PDEase_II PF02112.15 gi|530548243|ref|YP_008428779.1| - 0.00045 19.4 0.1 0.015 14.4 0.4 2.1 1 1 1 2 2 2 1 cAMP phosphodiesterases class-II UPF0047 PF01894.17 gi|530548244|ref|YP_008428780.1| - 1.3e-34 118.8 0.0 1.5e-34 118.6 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 VanZ PF04892.12 gi|530548245|ref|YP_008428781.1| - 4e-10 40.4 3.3 5.7e-10 39.9 3.3 1.3 1 1 0 1 1 1 1 VanZ like family DUF2279 PF10043.9 gi|530548245|ref|YP_008428781.1| - 0.00024 21.8 0.5 0.0022 18.7 0.2 2.0 1 1 1 2 2 2 1 Predicted periplasmic lipoprotein (DUF2279) Rhomboid PF01694.22 gi|530548245|ref|YP_008428781.1| - 0.021 14.9 2.4 0.029 14.4 2.4 1.5 1 1 0 1 1 1 0 Rhomboid family ThiP_synth PF10120.9 gi|530548246|ref|YP_008428782.1| - 2.5e-50 170.3 0.1 4.6e-50 169.5 0.1 1.4 1 0 0 1 1 1 1 Thiamine-phosphate synthase HTH_3 PF01381.22 gi|530548246|ref|YP_008428782.1| - 1.4e-05 25.1 0.1 3.6e-05 23.7 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix HTH_37 PF13744.6 gi|530548246|ref|YP_008428782.1| - 4.2e-05 23.4 0.0 9.4e-05 22.3 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.7 gi|530548246|ref|YP_008428782.1| - 0.00026 21.0 0.1 0.00058 19.8 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain Terminase_5 PF06056.12 gi|530548246|ref|YP_008428782.1| - 0.002 18.0 0.0 0.0036 17.2 0.0 1.4 1 0 0 1 1 1 1 Putative ATPase subunit of terminase (gpP-like) HTH_31 PF13560.6 gi|530548246|ref|YP_008428782.1| - 0.003 17.9 0.0 0.0066 16.8 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain RepB PF07506.11 gi|530548246|ref|YP_008428782.1| - 0.0033 17.5 0.0 0.007 16.5 0.0 1.5 1 0 0 1 1 1 1 RepB plasmid partitioning protein YdaS_antitoxin PF15943.5 gi|530548246|ref|YP_008428782.1| - 0.0047 16.8 0.0 0.011 15.6 0.0 1.5 1 0 0 1 1 1 1 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT Sigma70_r4 PF04545.16 gi|530548246|ref|YP_008428782.1| - 0.0068 15.9 0.0 0.019 14.5 0.0 1.7 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_23 PF13384.6 gi|530548246|ref|YP_008428782.1| - 0.0074 16.1 0.0 0.016 14.9 0.0 1.7 1 0 0 1 1 1 1 Homeodomain-like domain HTH_7 PF02796.15 gi|530548246|ref|YP_008428782.1| - 0.018 15.1 0.0 0.13 12.3 0.1 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase HTH_38 PF13936.6 gi|530548246|ref|YP_008428782.1| - 0.02 14.7 0.1 0.039 13.7 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|530548246|ref|YP_008428782.1| - 0.026 14.5 0.0 0.41 10.6 0.0 2.8 3 0 0 3 3 3 0 Crp-like helix-turn-helix domain HTH_24 PF13412.6 gi|530548246|ref|YP_008428782.1| - 0.03 13.9 0.1 0.093 12.3 0.0 1.9 2 0 0 2 2 1 0 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|530548246|ref|YP_008428782.1| - 0.031 14.2 0.0 0.062 13.2 0.0 1.5 1 0 0 1 1 1 0 MarR family Cro PF09048.10 gi|530548246|ref|YP_008428782.1| - 0.069 13.2 0.0 0.16 12.0 0.0 1.5 1 0 0 1 1 1 0 Cro SpoIIID PF12116.8 gi|530548246|ref|YP_008428782.1| - 0.071 13.2 0.0 0.24 11.5 0.0 1.8 2 0 0 2 2 2 0 Stage III sporulation protein D HTH_26 PF13443.6 gi|530548246|ref|YP_008428782.1| - 0.1 13.1 0.0 0.21 12.0 0.0 1.5 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain GerE PF00196.19 gi|530548246|ref|YP_008428782.1| - 0.11 12.0 0.1 0.47 10.0 0.0 2.0 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family Sigma70_r4_2 PF08281.12 gi|530548246|ref|YP_008428782.1| - 0.12 12.1 0.0 0.34 10.6 0.0 1.8 1 0 0 1 1 1 0 Sigma-70, region 4 LacI PF00356.21 gi|530548246|ref|YP_008428782.1| - 0.13 12.1 0.1 0.36 10.7 0.1 1.8 1 0 0 1 1 1 0 Bacterial regulatory proteins, lacI family DUF2110 PF09883.9 gi|530548247|ref|YP_008428783.1| - 0.037 13.6 0.0 0.051 13.2 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2110) C5-epim_C PF06662.13 gi|530548248|ref|YP_008428784.1| - 3.9e-43 147.1 10.8 3.9e-43 147.1 10.8 1.6 2 0 0 2 2 2 1 D-glucuronyl C5-epimerase C-terminus Glyco_hydro_88 PF07470.13 gi|530548248|ref|YP_008428784.1| - 0.0064 15.6 3.7 0.12 11.5 0.5 2.3 1 1 0 2 2 2 2 Glycosyl Hydrolase Family 88 Glyco_hydro_127 PF07944.12 gi|530548248|ref|YP_008428784.1| - 0.026 13.0 1.0 2.7 6.4 0.1 2.1 1 1 0 2 2 2 0 Beta-L-arabinofuranosidase, GH127 C5-epim_C PF06662.13 gi|530548249|ref|YP_008428785.1| - 5.5e-41 140.1 8.3 8.7e-41 139.5 8.3 1.3 1 0 0 1 1 1 1 D-glucuronyl C5-epimerase C-terminus ECF_trnsprt PF12822.7 gi|530548250|ref|YP_008428786.1| - 0.00012 22.2 18.7 0.00014 22.0 18.7 1.1 1 0 0 1 1 1 1 ECF transporter, substrate-specific component Aminotran_5 PF00266.19 gi|530548252|ref|YP_008428788.1| - 1.3e-137 458.7 0.0 1.5e-137 458.5 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.17 gi|530548252|ref|YP_008428788.1| - 1.5e-05 24.5 0.0 2.2e-05 23.9 0.0 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.20 gi|530548252|ref|YP_008428788.1| - 1.9e-05 23.4 0.0 3.3e-05 22.6 0.0 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.21 gi|530548252|ref|YP_008428788.1| - 2.9e-05 23.5 0.0 3.7e-05 23.2 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_1_2 PF00155.21 gi|530548252|ref|YP_008428788.1| - 4e-05 23.0 0.0 0.00014 21.2 0.1 1.7 2 0 0 2 2 2 1 Aminotransferase class I and II YfdX PF10938.8 gi|530548253|ref|YP_008428789.1| - 0.00018 21.5 13.6 0.013 15.4 0.1 3.6 2 1 1 3 3 3 1 YfdX protein 4HB_MCP_1 PF12729.7 gi|530548253|ref|YP_008428789.1| - 0.021 14.3 21.1 0.095 12.2 16.2 3.2 1 1 2 3 3 3 0 Four helix bundle sensory module for signal transduction Sec8_exocyst PF04048.14 gi|530548253|ref|YP_008428789.1| - 0.045 13.6 4.6 0.47 10.3 0.4 3.5 1 1 3 4 4 4 0 Sec8 exocyst complex component specific domain SH3BP5 PF05276.14 gi|530548253|ref|YP_008428789.1| - 0.055 13.3 20.0 0.065 13.0 0.8 2.9 1 1 1 2 2 2 0 SH3 domain-binding protein 5 (SH3BP5) PPR_2 PF13041.6 gi|530548253|ref|YP_008428789.1| - 0.13 12.5 0.8 5.2 7.3 0.0 3.4 4 0 0 4 4 4 0 PPR repeat family DUF2664 PF10867.8 gi|530548253|ref|YP_008428789.1| - 0.21 12.0 2.8 2.5 8.6 0.3 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2664) PPR PF01535.20 gi|530548253|ref|YP_008428789.1| - 0.3 11.4 6.5 9.1 6.8 0.0 4.4 5 0 0 5 5 3 0 PPR repeat EzrA PF06160.12 gi|530548253|ref|YP_008428789.1| - 0.37 8.9 36.4 0.26 9.4 0.7 3.5 2 1 1 3 3 3 0 Septation ring formation regulator, EzrA BORCS7 PF16088.5 gi|530548253|ref|YP_008428789.1| - 0.48 10.7 4.0 1.6 9.0 0.1 3.3 4 0 0 4 4 4 0 BLOC-1-related complex sub-unit 7 Myb_DNA-bind_3 PF12776.7 gi|530548253|ref|YP_008428789.1| - 0.75 10.8 5.8 1.8 9.6 0.0 3.8 1 1 4 5 5 5 0 Myb/SANT-like DNA-binding domain TPR_2 PF07719.17 gi|530548253|ref|YP_008428789.1| - 0.81 10.0 11.0 18 5.7 0.4 5.4 5 0 0 5 5 5 0 Tetratricopeptide repeat DUF4781 PF16013.5 gi|530548253|ref|YP_008428789.1| - 1.2 7.9 5.0 0.97 8.2 0.6 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4781) DAPDH_C PF16654.5 gi|530548253|ref|YP_008428789.1| - 1.3 8.9 5.8 1.2 9.0 0.7 2.5 2 0 0 2 2 2 0 Diaminopimelic acid dehydrogenase C-terminal domain TPR_1 PF00515.28 gi|530548253|ref|YP_008428789.1| - 3.7 7.5 11.6 50 3.9 0.1 5.2 5 1 0 6 6 6 0 Tetratricopeptide repeat OrfB_IS605 PF01385.19 gi|530548253|ref|YP_008428789.1| - 6.8 6.9 8.3 0.74 10.0 0.3 3.0 2 1 1 3 3 3 0 Probable transposase TBP PF00352.21 gi|530548255|ref|YP_008428791.1| - 4.5e-06 26.5 0.2 5.4e-06 26.3 0.2 1.1 1 0 0 1 1 1 1 Transcription factor TFIID (or TATA-binding protein, TBP) Fanconi_A PF03511.14 gi|530548255|ref|YP_008428791.1| - 0.023 14.6 0.2 0.23 11.4 0.0 2.2 2 1 0 2 2 2 0 Fanconi anaemia group A protein UPF0180 PF03698.13 gi|530548255|ref|YP_008428791.1| - 0.036 14.2 0.0 0.061 13.5 0.0 1.4 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0180) IreB PF06135.12 gi|530548255|ref|YP_008428791.1| - 0.092 13.0 0.2 0.46 10.7 0.0 1.9 2 0 0 2 2 2 0 IreB regulatory phosphoprotein AAA_18 PF13238.6 gi|530548257|ref|YP_008428793.1| - 5.9e-21 75.4 0.2 9.3e-21 74.7 0.1 1.4 1 1 0 1 1 1 1 AAA domain dNK PF01712.19 gi|530548257|ref|YP_008428793.1| - 9.7e-06 25.6 0.3 0.13 12.1 0.2 2.3 2 0 0 2 2 2 2 Deoxynucleoside kinase AAA_17 PF13207.6 gi|530548257|ref|YP_008428793.1| - 8.9e-05 22.9 0.1 0.0003 21.2 0.1 1.8 1 1 0 1 1 1 1 AAA domain CoaE PF01121.20 gi|530548257|ref|YP_008428793.1| - 0.0001 22.0 0.0 0.0052 16.5 0.0 2.3 2 0 0 2 2 2 1 Dephospho-CoA kinase AAA_33 PF13671.6 gi|530548257|ref|YP_008428793.1| - 0.00048 20.3 0.0 0.0024 18.1 0.0 1.9 1 1 0 1 1 1 1 AAA domain NA37 PF04245.13 gi|530548257|ref|YP_008428793.1| - 0.016 14.7 0.2 0.02 14.4 0.2 1.2 1 0 0 1 1 1 0 37-kD nucleoid-associated bacterial protein SKI PF01202.22 gi|530548257|ref|YP_008428793.1| - 0.02 15.0 0.1 0.26 11.4 0.1 2.1 2 0 0 2 2 2 0 Shikimate kinase Guanylate_kin PF00625.21 gi|530548257|ref|YP_008428793.1| - 0.026 14.2 0.1 0.039 13.7 0.1 1.3 1 0 0 1 1 1 0 Guanylate kinase ATPase_2 PF01637.18 gi|530548258|ref|YP_008428794.1| - 1.7e-35 123.1 0.0 3.2e-35 122.1 0.0 1.5 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea DUF234 PF03008.14 gi|530548258|ref|YP_008428794.1| - 6.2e-35 119.6 0.3 1.5e-34 118.4 0.3 1.7 1 0 0 1 1 1 1 Archaea bacterial proteins of unknown function AAA_14 PF13173.6 gi|530548258|ref|YP_008428794.1| - 1.1e-09 38.4 0.0 2.3e-09 37.4 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|530548258|ref|YP_008428794.1| - 1.2e-07 32.3 0.1 5.4e-07 30.1 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain HTH_IclR PF09339.10 gi|530548258|ref|YP_008428794.1| - 5.1e-06 26.2 0.1 1.8e-05 24.5 0.0 1.9 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|530548258|ref|YP_008428794.1| - 1.2e-05 25.1 0.0 2.4e-05 24.1 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family UPF0102 PF02021.17 gi|530548258|ref|YP_008428794.1| - 0.0011 19.2 0.1 0.003 17.8 0.1 1.7 1 0 0 1 1 1 1 Uncharacterised protein family UPF0102 AAA_22 PF13401.6 gi|530548258|ref|YP_008428794.1| - 0.0013 19.0 0.0 0.0029 17.9 0.0 1.6 1 0 0 1 1 1 1 AAA domain TrmB PF01978.19 gi|530548258|ref|YP_008428794.1| - 0.0034 17.2 0.3 0.01 15.7 0.0 1.9 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|530548258|ref|YP_008428794.1| - 0.0047 16.8 0.4 0.022 14.6 0.1 2.1 2 0 0 2 2 2 1 MarR family HTH_45 PF14947.6 gi|530548258|ref|YP_008428794.1| - 0.0072 16.3 0.0 0.023 14.7 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix TniB PF05621.11 gi|530548258|ref|YP_008428794.1| - 0.013 14.9 0.0 0.023 14.1 0.0 1.4 1 1 0 1 1 1 0 Bacterial TniB protein AAA PF00004.29 gi|530548258|ref|YP_008428794.1| - 0.016 15.6 0.0 0.047 14.1 0.0 1.7 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) HTH_9 PF08221.11 gi|530548258|ref|YP_008428794.1| - 0.019 15.1 0.0 0.044 13.9 0.0 1.6 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain AAA_24 PF13479.6 gi|530548258|ref|YP_008428794.1| - 0.16 11.7 0.0 0.26 11.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain LysM PF01476.20 gi|530548259|ref|YP_008428795.1| - 3.3e-05 23.9 0.0 3.8e-05 23.7 0.0 1.2 1 0 0 1 1 1 1 LysM domain THB PF18362.1 gi|530548259|ref|YP_008428795.1| - 0.025 14.2 0.1 0.037 13.6 0.1 1.3 1 0 0 1 1 1 0 Tri-helix bundle domain Mor PF08765.11 gi|530548259|ref|YP_008428795.1| - 0.07 13.1 0.0 0.073 13.1 0.0 1.2 1 0 0 1 1 1 0 Mor transcription activator family EcoR124_C PF12008.8 gi|530548260|ref|YP_008428796.1| - 3.4e-05 23.6 1.4 0.0004 20.1 1.3 2.1 1 1 1 2 2 2 1 Type I restriction and modification enzyme - subunit R C terminal DUF2924 PF11149.8 gi|530548260|ref|YP_008428796.1| - 0.012 16.0 1.4 9.7 6.6 0.0 2.9 2 1 0 2 2 2 0 Protein of unknown function (DUF2924) DUF2096 PF09869.9 gi|530548260|ref|YP_008428796.1| - 0.035 14.2 2.2 0.056 13.5 0.4 1.9 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2096) DUF294_C PF10335.9 gi|530548260|ref|YP_008428796.1| - 0.05 13.4 0.4 0.53 10.1 0.1 2.3 2 0 0 2 2 2 0 Putative nucleotidyltransferase substrate binding domain Phasin PF05597.11 gi|530548260|ref|YP_008428796.1| - 0.099 12.6 2.6 0.098 12.7 0.7 2.0 2 0 0 2 2 2 0 Poly(hydroxyalcanoate) granule associated protein (phasin) Metal_resist PF13801.6 gi|530548260|ref|YP_008428796.1| - 0.2 11.9 1.4 0.38 10.9 0.0 2.0 2 1 1 3 3 3 0 Heavy-metal resistance DUF523 PF04463.12 gi|530548261|ref|YP_008428797.1| - 4.6e-07 29.9 0.0 8.5e-07 29.1 0.0 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF523) Flavodoxin_5 PF12724.7 gi|530548262|ref|YP_008428798.1| - 3.1e-11 43.7 0.0 4.1e-11 43.3 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin domain Flavodoxin_3 PF12641.7 gi|530548262|ref|YP_008428798.1| - 2.2e-09 37.2 0.0 1.8e-06 27.8 0.0 2.2 1 1 1 2 2 2 2 Flavodoxin domain Flavodoxin_1 PF00258.25 gi|530548262|ref|YP_008428798.1| - 0.15 12.2 0.1 2.6 8.3 0.0 2.5 1 1 1 2 2 2 0 Flavodoxin EamA PF00892.20 gi|530548263|ref|YP_008428799.1| - 1.8e-23 83.2 24.8 2e-23 83.1 24.8 1.0 1 0 0 1 1 1 1 EamA-like transporter family TPT PF03151.16 gi|530548263|ref|YP_008428799.1| - 0.0071 15.7 7.9 0.009 15.4 7.9 1.2 1 0 0 1 1 1 1 Triose-phosphate Transporter family PrgI PF12666.7 gi|530548263|ref|YP_008428799.1| - 0.043 14.5 4.6 0.043 14.5 4.6 2.9 1 1 2 3 3 3 0 PrgI family protein TMEM234 PF10639.9 gi|530548263|ref|YP_008428799.1| - 0.075 13.1 6.6 0.053 13.6 2.6 2.0 1 1 1 2 2 2 0 Putative transmembrane family 234 OST3_OST6 PF04756.13 gi|530548263|ref|YP_008428799.1| - 1.9 7.8 10.6 0.071 12.5 1.7 2.1 2 0 0 2 2 2 0 OST3 / OST6 family, transporter family PGM_PMM_I PF02878.16 gi|530548264|ref|YP_008428800.1| - 3.2e-45 153.2 0.0 6.2e-45 152.3 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.16 gi|530548264|ref|YP_008428800.1| - 9.9e-22 77.5 0.0 2.7e-21 76.1 0.0 1.8 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.16 gi|530548264|ref|YP_008428800.1| - 6.5e-19 68.2 0.0 1.4e-18 67.2 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.20 gi|530548264|ref|YP_008428800.1| - 5.1e-08 33.0 0.1 2e-07 31.1 0.0 2.0 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain CinA_KH PF18146.1 gi|530548264|ref|YP_008428800.1| - 0.18 12.0 0.8 0.61 10.3 0.1 2.3 2 0 0 2 2 2 0 Damage-inducible protein CinA KH domain Bmp PF02608.14 gi|530548266|ref|YP_008428802.1| - 2.2e-57 194.3 4.2 4.3e-57 193.4 4.2 1.4 1 0 0 1 1 1 1 ABC transporter substrate-binding protein PnrA-like Peripla_BP_1 PF00532.21 gi|530548266|ref|YP_008428802.1| - 0.048 13.1 0.0 0.1 12.0 0.0 1.6 1 0 0 1 1 1 0 Periplasmic binding proteins and sugar binding domain of LacI family ABC_tran PF00005.27 gi|530548267|ref|YP_008428803.1| - 2.8e-47 160.7 0.0 7.5e-28 97.7 0.0 2.2 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 gi|530548267|ref|YP_008428803.1| - 8.2e-09 35.7 0.5 0.002 18.0 0.1 2.4 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|530548267|ref|YP_008428803.1| - 0.00077 19.2 0.7 0.025 14.3 0.2 2.6 2 0 0 2 2 2 1 P-loop containing region of AAA domain Bac_DnaA PF00308.18 gi|530548267|ref|YP_008428803.1| - 0.0015 18.4 1.0 0.018 14.9 0.0 2.9 3 0 0 3 3 3 1 Bacterial dnaA protein AAA_30 PF13604.6 gi|530548267|ref|YP_008428803.1| - 0.0036 17.1 0.0 0.018 14.7 0.0 2.1 2 1 0 2 2 2 1 AAA domain AAA_23 PF13476.6 gi|530548267|ref|YP_008428803.1| - 0.02 15.4 0.1 0.02 15.4 0.1 2.1 3 0 0 3 3 3 0 AAA domain AAA_15 PF13175.6 gi|530548267|ref|YP_008428803.1| - 0.067 12.9 0.1 0.15 11.8 0.1 1.6 1 1 1 2 2 2 0 AAA ATPase domain RsgA_GTPase PF03193.16 gi|530548267|ref|YP_008428803.1| - 0.15 11.9 2.2 0.65 9.9 0.1 2.8 3 0 0 3 3 3 0 RsgA GTPase AAA_27 PF13514.6 gi|530548267|ref|YP_008428803.1| - 0.17 11.5 0.1 0.32 10.6 0.1 1.4 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|530548267|ref|YP_008428803.1| - 0.2 11.9 0.9 2.4 8.4 0.9 2.5 1 1 0 1 1 1 0 AAA domain SMC_N PF02463.19 gi|530548267|ref|YP_008428803.1| - 0.3 10.5 3.0 10 5.5 0.1 3.1 3 1 0 3 3 3 0 RecF/RecN/SMC N terminal domain AAA_24 PF13479.6 gi|530548267|ref|YP_008428803.1| - 0.44 10.2 3.8 16 5.2 3.8 2.8 1 1 0 1 1 1 0 AAA domain PduV-EutP PF10662.9 gi|530548267|ref|YP_008428803.1| - 0.5 10.1 4.4 6.3 6.5 0.1 3.6 5 0 0 5 5 5 0 Ethanolamine utilisation - propanediol utilisation DLIC PF05783.11 gi|530548267|ref|YP_008428803.1| - 0.82 8.4 3.1 0.53 9.1 0.3 2.0 3 0 0 3 3 3 0 Dynein light intermediate chain (DLIC) BPD_transp_2 PF02653.16 gi|530548268|ref|YP_008428804.1| - 4e-41 141.0 29.6 4e-41 141.0 29.6 1.9 2 0 0 2 2 2 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.16 gi|530548269|ref|YP_008428805.1| - 5.6e-40 137.2 29.3 6.8e-40 136.9 29.3 1.1 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component Gly-zipper_Omp PF13488.6 gi|530548269|ref|YP_008428805.1| - 0.013 15.5 0.6 0.013 15.5 0.6 3.4 3 1 0 3 3 3 0 Glycine zipper ZnuA PF01297.17 gi|530548270|ref|YP_008428806.1| - 1.6e-25 90.0 0.0 2.2e-25 89.6 0.0 1.2 1 0 0 1 1 1 1 Zinc-uptake complex component A periplasmic THUMP PF02926.17 gi|530548270|ref|YP_008428806.1| - 0.07 13.2 0.0 0.15 12.1 0.0 1.5 1 0 0 1 1 1 0 THUMP domain DUF4932 PF16286.5 gi|530548271|ref|YP_008428807.1| - 5e-16 58.9 14.5 4.6e-14 52.5 3.2 2.6 3 0 0 3 3 3 2 Domain of unknown function (DUF4932) S_layer_C PF05124.12 gi|530548271|ref|YP_008428807.1| - 2.3e-11 44.2 0.3 6e-10 39.5 0.3 2.5 1 1 0 1 1 1 1 S-layer like family, C-terminal region T6PP_N PF18572.1 gi|530548271|ref|YP_008428807.1| - 0.15 11.9 0.5 0.53 10.1 0.2 2.1 2 0 0 2 2 2 0 Trehalose-6-phosphate phosphatase N-terminal helical bundle domain THDPS_N PF14790.6 gi|530548272|ref|YP_008428808.1| - 0.067 13.0 0.1 0.067 13.0 0.1 1.2 1 0 0 1 1 1 0 Tetrahydrodipicolinate N-succinyltransferase N-terminal Pribosyltran PF00156.27 gi|530548273|ref|YP_008428809.1| - 1.8e-20 73.1 0.0 2.8e-20 72.4 0.0 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain DUF739 PF05339.11 gi|530548273|ref|YP_008428809.1| - 0.082 13.1 1.0 0.18 12.0 0.2 2.0 2 1 0 2 2 2 0 Protein of unknown function (DUF739) OST3_OST6 PF04756.13 gi|530548277|ref|YP_008428813.1| - 0.12 11.7 0.6 0.12 11.7 0.6 1.0 1 0 0 1 1 1 0 OST3 / OST6 family, transporter family BBS2_Mid PF14783.6 gi|530548279|ref|YP_008428815.1| - 0.085 12.9 0.1 0.12 12.4 0.1 1.3 1 0 0 1 1 1 0 Ciliary BBSome complex subunit 2, middle region Methyltransf_25 PF13649.6 gi|530548281|ref|YP_008428817.1| - 3.4e-07 30.9 0.0 1.6e-06 28.7 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|530548281|ref|YP_008428817.1| - 7.4e-07 28.7 0.0 1.6e-06 27.6 0.0 1.6 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.6 gi|530548281|ref|YP_008428817.1| - 4.8e-06 26.5 0.0 8.8e-06 25.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|530548281|ref|YP_008428817.1| - 2.7e-05 24.0 0.0 5e-05 23.2 0.0 1.4 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_11 PF08241.12 gi|530548281|ref|YP_008428817.1| - 3.1e-05 24.5 0.0 5.4e-05 23.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.12 gi|530548281|ref|YP_008428817.1| - 0.0028 17.3 0.0 0.006 16.2 0.0 1.6 1 1 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_31 PF13847.6 gi|530548281|ref|YP_008428817.1| - 0.052 13.4 0.0 0.12 12.2 0.0 1.7 1 1 0 1 1 1 0 Methyltransferase domain CMAS PF02353.20 gi|530548281|ref|YP_008428817.1| - 0.11 11.8 0.0 0.2 10.9 0.0 1.6 1 1 0 1 1 1 0 Mycolic acid cyclopropane synthetase RrnaAD PF00398.20 gi|530548281|ref|YP_008428817.1| - 0.12 11.5 0.0 0.15 11.1 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase DUF234 PF03008.14 gi|530548282|ref|YP_008428818.1| - 3e-29 101.4 0.2 9.5e-29 99.8 0.0 2.0 2 0 0 2 2 2 1 Archaea bacterial proteins of unknown function ATPase_2 PF01637.18 gi|530548282|ref|YP_008428818.1| - 2.9e-24 86.3 1.7 3.1e-23 82.9 0.3 2.5 2 1 0 2 2 2 1 ATPase domain predominantly from Archaea AAA_14 PF13173.6 gi|530548282|ref|YP_008428818.1| - 1.3e-09 38.1 1.1 3.5e-09 36.8 0.1 2.1 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|530548282|ref|YP_008428818.1| - 1e-06 29.2 0.0 2e-06 28.3 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain HTH_5 PF01022.20 gi|530548282|ref|YP_008428818.1| - 0.00035 20.4 0.0 0.0007 19.4 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TniB PF05621.11 gi|530548282|ref|YP_008428818.1| - 0.0038 16.7 0.0 0.011 15.2 0.0 1.7 2 0 0 2 2 2 1 Bacterial TniB protein HTH_45 PF14947.6 gi|530548282|ref|YP_008428818.1| - 0.026 14.5 0.3 0.061 13.3 0.3 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix AAA_22 PF13401.6 gi|530548282|ref|YP_008428818.1| - 0.11 12.8 0.0 0.23 11.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA PF00004.29 gi|530548282|ref|YP_008428818.1| - 0.13 12.7 0.0 0.38 11.2 0.0 1.8 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Peptidase_M20 PF01546.28 gi|530548283|ref|YP_008428819.1| - 1e-35 123.4 0.0 1.3e-35 122.9 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M28 PF04389.17 gi|530548283|ref|YP_008428819.1| - 4.2e-06 26.6 0.0 0.00011 22.0 0.0 2.1 2 0 0 2 2 2 1 Peptidase family M28 Peptidase_M42 PF05343.14 gi|530548283|ref|YP_008428819.1| - 8.5e-05 21.7 0.0 0.00089 18.4 0.0 2.4 3 0 0 3 3 3 1 M42 glutamyl aminopeptidase PIN PF01850.21 gi|530548285|ref|YP_008428821.1| - 2.7e-08 34.3 7.6 3.5e-08 34.0 7.6 1.1 1 0 0 1 1 1 1 PIN domain TPR_8 PF13181.6 gi|530548285|ref|YP_008428821.1| - 0.014 15.6 6.0 1.8 9.0 0.3 3.4 3 0 0 3 3 3 0 Tetratricopeptide repeat TPR_2 PF07719.17 gi|530548285|ref|YP_008428821.1| - 0.25 11.6 6.4 1.6 9.0 0.3 3.2 2 1 1 3 3 3 0 Tetratricopeptide repeat GP57 PF17594.2 gi|530548286|ref|YP_008428822.1| - 0.015 15.0 0.4 0.034 13.9 0.1 1.6 1 1 0 1 1 1 0 Phage Tail fiber assembly helper gene product 57 tRNA-synt_1e PF01406.19 gi|530548287|ref|YP_008428823.1| - 5.7e-138 459.3 0.0 5.7e-138 459.3 0.0 1.5 2 0 0 2 2 2 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1g PF09334.11 gi|530548287|ref|YP_008428823.1| - 4.8e-22 78.3 4.6 1.1e-11 44.1 0.3 2.8 3 0 0 3 3 3 2 tRNA synthetases class I (M) DALR_2 PF09190.11 gi|530548287|ref|YP_008428823.1| - 1.2e-16 60.9 1.0 5.2e-16 58.9 0.3 2.4 1 1 1 2 2 2 1 DALR domain tRNA-synt_1 PF00133.22 gi|530548287|ref|YP_008428823.1| - 4.8e-10 38.3 0.1 3e-07 29.1 0.0 2.6 2 1 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1f PF01921.18 gi|530548287|ref|YP_008428823.1| - 3e-08 33.0 2.3 4.2e-06 25.9 0.1 2.8 2 1 1 3 3 3 2 tRNA synthetases class I (K) tRNA-synt_1c PF00749.21 gi|530548287|ref|YP_008428823.1| - 0.022 13.7 0.5 0.082 11.8 0.5 2.0 1 1 0 1 1 1 0 tRNA synthetases class I (E and Q), catalytic domain CdvA PF18822.1 gi|530548287|ref|YP_008428823.1| - 0.04 13.8 8.7 1.3 8.9 0.1 3.5 3 0 0 3 3 3 0 CdvA-like coiled-coil domain EntA_Immun PF08951.10 gi|530548287|ref|YP_008428823.1| - 0.11 12.9 1.5 0.4 11.1 0.1 2.7 2 0 0 2 2 2 0 Enterocin A Immunity PARP_reg PF02877.14 gi|530548287|ref|YP_008428823.1| - 0.15 12.2 0.4 0.59 10.2 0.4 2.1 1 1 0 1 1 1 0 Poly(ADP-ribose) polymerase, regulatory domain Rx_N PF18052.1 gi|530548287|ref|YP_008428823.1| - 0.5 10.7 2.8 0.55 10.5 0.1 2.3 2 0 0 2 2 2 0 Rx N-terminal domain FKBP_C PF00254.28 gi|530548288|ref|YP_008428824.1| - 4.2e-17 62.2 0.0 1.2e-16 60.8 0.0 1.9 1 1 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase FKBP26_C PF18046.1 gi|530548288|ref|YP_008428824.1| - 2.2e-07 30.9 1.5 1.1e-06 28.6 0.7 2.4 2 0 0 2 2 2 1 FKBP26_C-terminal Borrelia_P83 PF05262.11 gi|530548288|ref|YP_008428824.1| - 7 5.0 15.2 9.4 4.6 15.2 1.2 1 0 0 1 1 1 0 Borrelia P83/100 protein Rol_Rep_N PF18106.1 gi|530548289|ref|YP_008428825.1| - 0.031 14.6 0.0 1.7 9.0 0.0 3.0 3 1 0 3 3 3 0 Rolling Circle replication initiation protein N-terminal domain CPBP PF02517.16 gi|530548290|ref|YP_008428826.1| - 9.3e-08 32.4 8.4 2.4e-07 31.0 8.4 1.9 1 1 0 1 1 1 1 CPBP intramembrane metalloprotease DUF4097 PF13349.6 gi|530548291|ref|YP_008428827.1| - 4.8e-13 49.0 10.7 1.8e-10 40.6 3.1 2.4 1 1 1 2 2 2 2 Putative adhesin Bactofilin PF04519.13 gi|530548291|ref|YP_008428827.1| - 0.00085 19.6 9.5 0.00085 19.6 9.5 3.1 3 1 1 4 4 4 1 Polymer-forming cytoskeletal DUF2154 PF09922.9 gi|530548291|ref|YP_008428827.1| - 0.0024 17.8 4.4 0.17 11.7 0.1 2.6 1 1 0 2 2 2 2 Cell wall-active antibiotics response 4TMS YvqF eIF2A PF08662.11 gi|530548291|ref|YP_008428827.1| - 0.055 13.3 0.3 0.12 12.2 0.2 1.5 1 1 0 1 1 1 0 Eukaryotic translation initiation factor eIF2A Toast_rack_N PF17115.5 gi|530548291|ref|YP_008428827.1| - 0.093 13.0 3.8 0.18 12.1 0.5 2.3 1 1 2 3 3 3 0 N-terminal domain of toast_rack, DUF2154 ABC_tran PF00005.27 gi|530548292|ref|YP_008428828.1| - 8.4e-19 68.4 0.0 2.5e-18 66.9 0.0 1.9 1 1 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|530548292|ref|YP_008428828.1| - 5e-07 29.8 1.6 0.014 15.2 0.0 2.8 2 1 0 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|530548292|ref|YP_008428828.1| - 4.1e-05 23.1 0.1 0.0013 18.2 0.0 1.9 1 1 0 2 2 2 1 RecF/RecN/SMC N terminal domain Acetyltransf_1 PF00583.25 gi|530548292|ref|YP_008428828.1| - 0.00017 21.8 0.0 0.00051 20.3 0.0 2.0 1 1 0 1 1 1 1 Acetyltransferase (GNAT) family AAA_22 PF13401.6 gi|530548292|ref|YP_008428828.1| - 0.0003 21.1 0.1 0.00079 19.7 0.0 1.7 2 0 0 2 2 1 1 AAA domain Acetyltransf_7 PF13508.7 gi|530548292|ref|YP_008428828.1| - 0.00054 20.3 0.0 0.0012 19.2 0.0 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|530548292|ref|YP_008428828.1| - 0.0021 18.0 0.0 0.0048 16.8 0.0 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain RsgA_GTPase PF03193.16 gi|530548292|ref|YP_008428828.1| - 0.0044 16.9 0.0 0.01 15.8 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_16 PF13191.6 gi|530548292|ref|YP_008428828.1| - 0.0057 17.1 0.4 0.015 15.7 0.3 1.6 1 1 0 1 1 1 1 AAA ATPase domain GNAT_acetyltr_2 PF13718.6 gi|530548292|ref|YP_008428828.1| - 0.0076 15.7 0.0 0.013 14.9 0.0 1.4 1 0 0 1 1 1 1 GNAT acetyltransferase 2 AAA_29 PF13555.6 gi|530548292|ref|YP_008428828.1| - 0.024 14.3 0.0 0.052 13.3 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|530548292|ref|YP_008428828.1| - 0.044 14.3 0.6 0.12 12.9 0.0 2.0 2 1 0 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|530548292|ref|YP_008428828.1| - 0.061 13.5 0.3 0.25 11.5 0.2 2.0 2 0 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.23 gi|530548292|ref|YP_008428828.1| - 0.068 13.3 0.0 0.16 12.0 0.0 1.6 1 0 0 1 1 1 0 50S ribosome-binding GTPase FR47 PF08445.10 gi|530548292|ref|YP_008428828.1| - 0.079 12.9 0.2 1.6 8.8 0.0 2.6 2 1 0 2 2 2 0 FR47-like protein Prim_Zn_Ribbon PF08273.12 gi|530548292|ref|YP_008428828.1| - 0.1 12.9 0.5 0.18 12.1 0.5 1.3 1 0 0 1 1 1 0 Zinc-binding domain of primase-helicase NB-ARC PF00931.22 gi|530548292|ref|YP_008428828.1| - 0.15 11.3 0.0 1.1 8.4 0.0 2.2 2 0 0 2 2 2 0 NB-ARC domain AAA_28 PF13521.6 gi|530548292|ref|YP_008428828.1| - 0.15 12.3 0.3 0.63 10.3 0.1 2.1 2 0 0 2 2 2 0 AAA domain Lar_restr_allev PF14354.6 gi|530548292|ref|YP_008428828.1| - 0.16 12.4 0.1 0.34 11.3 0.1 1.5 1 0 0 1 1 1 0 Restriction alleviation protein Lar Zn-ribbon_8 PF09723.10 gi|530548292|ref|YP_008428828.1| - 0.16 12.1 0.1 0.34 11.1 0.1 1.5 1 0 0 1 1 1 0 Zinc ribbon domain MobB PF03205.14 gi|530548292|ref|YP_008428828.1| - 0.18 11.7 0.2 0.51 10.2 0.2 1.8 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B TackOD1 PF18551.1 gi|530548292|ref|YP_008428828.1| - 0.18 11.5 0.0 0.32 10.6 0.0 1.4 1 0 0 1 1 1 0 Thaumarchaeal output domain 1 Peptidase_S9 PF00326.21 gi|530548293|ref|YP_008428829.1| - 1.1e-56 191.6 0.0 1.7e-56 191.1 0.0 1.3 1 0 0 1 1 1 1 Prolyl oligopeptidase family Peptidase_S9_N PF02897.15 gi|530548293|ref|YP_008428829.1| - 7.7e-25 87.5 0.0 1.3e-24 86.8 0.0 1.3 1 0 0 1 1 1 1 Prolyl oligopeptidase, N-terminal beta-propeller domain Hydrolase_4 PF12146.8 gi|530548293|ref|YP_008428829.1| - 0.016 14.5 0.0 0.049 12.9 0.0 1.7 2 0 0 2 2 2 0 Serine aminopeptidase, S33 MmoB_DmpM PF02406.17 gi|530548293|ref|YP_008428829.1| - 0.039 14.2 0.2 0.1 12.8 0.2 1.7 1 1 0 1 1 1 0 MmoB/DmpM family Abhydrolase_1 PF00561.20 gi|530548293|ref|YP_008428829.1| - 0.062 12.9 0.0 0.36 10.4 0.0 2.0 1 1 1 2 2 2 0 alpha/beta hydrolase fold PQQ_2 PF13360.6 gi|530548294|ref|YP_008428830.1| - 2.1e-09 37.3 0.2 3.2e-05 23.6 0.0 2.8 1 1 2 3 3 3 3 PQQ-like domain PQQ_3 PF13570.6 gi|530548294|ref|YP_008428830.1| - 0.016 15.6 3.5 5.9 7.5 0.0 4.1 5 0 0 5 5 5 0 PQQ-like domain WD40_like PF17005.5 gi|530548294|ref|YP_008428830.1| - 0.027 13.8 0.7 0.086 12.1 0.1 2.1 3 0 0 3 3 3 0 WD40-like domain DUF5449 PF17528.2 gi|530548294|ref|YP_008428830.1| - 0.11 12.2 0.0 0.19 11.5 0.0 1.3 1 0 0 1 1 1 0 Family of unknown function (DUF5449) DUF5122 PF17164.4 gi|530548294|ref|YP_008428830.1| - 0.93 9.8 4.6 14 6.0 0.1 3.5 3 0 0 3 3 3 0 Domain of unknown function (DUF5122) beta-propeller DEAD_assoc PF08494.11 gi|530548295|ref|YP_008428831.1| - 1.5e-55 188.0 0.3 2.7e-55 187.1 0.3 1.5 1 0 0 1 1 1 1 DEAD/H associated DEAD PF00270.29 gi|530548295|ref|YP_008428831.1| - 1.3e-29 103.2 0.3 1.1e-27 96.9 0.0 3.0 3 0 0 3 3 3 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|530548295|ref|YP_008428831.1| - 3.2e-17 62.9 0.1 1.7e-16 60.5 0.0 2.2 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|530548295|ref|YP_008428831.1| - 8.7e-12 45.4 0.0 5.6e-11 42.7 0.0 2.4 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit DUF1424 PF07232.11 gi|530548295|ref|YP_008428831.1| - 0.0047 16.0 0.0 0.0095 15.0 0.0 1.4 1 0 0 1 1 1 1 Putative rep protein (DUF1424) T2SSE PF00437.20 gi|530548295|ref|YP_008428831.1| - 0.016 14.3 0.2 0.36 9.9 0.0 2.5 2 0 0 2 2 2 0 Type II/IV secretion system protein SNF2_N PF00176.23 gi|530548295|ref|YP_008428831.1| - 0.036 12.8 0.0 0.096 11.4 0.0 1.7 2 0 0 2 2 2 0 SNF2 family N-terminal domain SWI2_SNF2 PF18766.1 gi|530548295|ref|YP_008428831.1| - 0.13 11.9 0.3 49 3.5 0.0 3.4 3 1 0 3 3 3 0 SWI2/SNF2 ATPase PhoH PF02562.16 gi|530548295|ref|YP_008428831.1| - 0.14 11.6 0.0 0.32 10.4 0.0 1.5 1 0 0 1 1 1 0 PhoH-like protein AAA_19 PF13245.6 gi|530548295|ref|YP_008428831.1| - 0.19 12.1 0.1 1.5 9.2 0.0 2.6 3 1 0 3 3 3 0 AAA domain Trp_Tyr_perm PF03222.13 gi|530548297|ref|YP_008428833.1| - 7.9e-36 123.9 31.6 1.9e-35 122.7 31.6 1.5 1 1 0 1 1 1 1 Tryptophan/tyrosine permease family Aa_trans PF01490.18 gi|530548297|ref|YP_008428833.1| - 7.9e-15 54.5 29.3 2.6e-13 49.5 29.3 2.8 1 1 0 1 1 1 1 Transmembrane amino acid transporter protein Spore_permease PF03845.13 gi|530548297|ref|YP_008428833.1| - 7.9e-12 44.6 15.0 7.9e-12 44.6 15.0 2.4 1 1 1 2 2 2 1 Spore germination protein TcdA_TcdB_pore PF12920.7 gi|530548297|ref|YP_008428833.1| - 0.019 13.2 0.9 0.031 12.5 0.9 1.3 1 0 0 1 1 1 0 TcdA/TcdB pore forming domain OrfB_Zn_ribbon PF07282.11 gi|530547453|ref|YP_008428834.1| - 6.9e-26 90.0 0.3 1.6e-25 88.8 0.0 1.8 2 0 0 2 2 2 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|530547453|ref|YP_008428834.1| - 8.1e-26 90.6 0.7 1.8e-25 89.5 0.0 1.9 2 0 0 2 2 2 1 Probable transposase HTH_OrfB_IS605 PF12323.8 gi|530547453|ref|YP_008428834.1| - 1.8e-10 40.1 0.5 4e-10 39.0 0.5 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain TF_Zn_Ribbon PF08271.12 gi|530547453|ref|YP_008428834.1| - 0.00014 21.3 1.5 0.37 10.3 0.2 2.5 1 1 1 2 2 2 2 TFIIB zinc-binding Zn-ribbon_8 PF09723.10 gi|530547453|ref|YP_008428834.1| - 0.14 12.3 0.5 0.28 11.3 0.5 1.5 1 0 0 1 1 1 0 Zinc ribbon domain DZR PF12773.7 gi|530547453|ref|YP_008428834.1| - 0.18 11.8 0.2 0.32 11.0 0.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon zf_UBZ PF18439.1 gi|530547453|ref|YP_008428834.1| - 0.28 10.8 0.5 11 5.7 0.1 2.3 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger zinc_ribbon_2 PF13240.6 gi|530547453|ref|YP_008428834.1| - 0.3 10.9 1.0 14 5.6 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.6 gi|530547453|ref|YP_008428834.1| - 1.1 9.3 2.8 9.7 6.2 2.7 2.4 1 1 1 2 2 2 0 zinc-ribbon domain DivIC PF04977.15 gi|530547453|ref|YP_008428834.1| - 1.1 9.1 6.9 3.3 7.5 1.6 3.0 3 0 0 3 3 3 0 Septum formation initiator zf-ribbon_3 PF13248.6 gi|530547453|ref|YP_008428834.1| - 2 8.0 3.6 22 4.6 3.7 2.1 1 1 0 1 1 1 0 zinc-ribbon domain DUF896 PF05979.12 gi|530547453|ref|YP_008428834.1| - 7 6.6 9.1 0.7 9.8 0.4 2.5 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF896) Y1_Tnp PF01797.16 gi|530547454|ref|YP_008428835.1| - 5.1e-08 33.1 0.0 5.3e-08 33.0 0.0 1.0 1 0 0 1 1 1 1 Transposase IS200 like ABC_tran PF00005.27 gi|530548298|ref|YP_008428836.1| - 4.6e-33 114.6 0.0 9.4e-33 113.6 0.0 1.5 1 0 0 1 1 1 1 ABC transporter TOBE PF03459.17 gi|530548298|ref|YP_008428836.1| - 4.2e-18 65.4 0.1 7.7e-18 64.6 0.1 1.5 1 0 0 1 1 1 1 TOBE domain TOBE_2 PF08402.10 gi|530548298|ref|YP_008428836.1| - 7.8e-12 45.2 0.0 9.3e-11 41.7 0.0 2.2 2 0 0 2 2 2 1 TOBE domain AAA_21 PF13304.6 gi|530548298|ref|YP_008428836.1| - 1.9e-05 24.7 1.9 0.02 14.7 0.2 2.3 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SbcCD_C PF13558.6 gi|530548298|ref|YP_008428836.1| - 5.9e-05 23.2 0.1 0.0013 18.9 0.1 2.3 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit SMC_N PF02463.19 gi|530548298|ref|YP_008428836.1| - 0.00036 20.0 0.0 0.0018 17.8 0.0 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|530548298|ref|YP_008428836.1| - 0.0026 18.3 0.5 0.0066 17.0 0.2 1.7 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|530548298|ref|YP_008428836.1| - 0.0065 16.2 0.0 0.012 15.3 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|530548298|ref|YP_008428836.1| - 0.01 16.2 0.0 0.019 15.3 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain CysA_C_terminal PF17850.1 gi|530548298|ref|YP_008428836.1| - 0.024 15.2 0.1 0.056 14.0 0.1 1.7 1 0 0 1 1 1 0 CysA C-terminal regulatory domain OB_MalK PF17912.1 gi|530548298|ref|YP_008428836.1| - 0.065 14.1 0.9 0.23 12.3 0.4 2.3 2 0 0 2 2 2 0 MalK OB fold domain Mg_chelatase PF01078.21 gi|530548298|ref|YP_008428836.1| - 0.088 12.2 0.0 0.15 11.4 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI IstB_IS21 PF01695.17 gi|530548298|ref|YP_008428836.1| - 0.1 12.3 0.0 0.37 10.5 0.0 1.9 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_22 PF13401.6 gi|530548298|ref|YP_008428836.1| - 0.13 12.6 0.0 0.45 10.8 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|530548298|ref|YP_008428836.1| - 0.17 11.6 0.0 0.39 10.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain DUF3226 PF11536.8 gi|530548299|ref|YP_008428837.1| - 3.4e-97 324.8 0.6 3.8e-97 324.6 0.6 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3226) ACCA PF03255.14 gi|530548299|ref|YP_008428837.1| - 0.16 11.8 0.1 2.1 8.2 0.0 2.3 2 1 1 3 3 3 0 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit AAA_15 PF13175.6 gi|530548300|ref|YP_008428838.1| - 2.6e-21 76.8 1.1 1.8e-10 41.1 0.9 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_21 PF13304.6 gi|530548300|ref|YP_008428838.1| - 2.5e-15 57.1 0.4 2.2e-08 34.3 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|530548300|ref|YP_008428838.1| - 3.5e-08 34.2 1.4 6e-08 33.4 1.4 1.4 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|530548300|ref|YP_008428838.1| - 8.8e-08 31.8 0.0 1.9e-07 30.8 0.0 1.6 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain DUF2813 PF11398.8 gi|530548300|ref|YP_008428838.1| - 3.8e-05 23.1 1.5 7.2e-05 22.2 0.4 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF2813) AAA_29 PF13555.6 gi|530548300|ref|YP_008428838.1| - 0.0033 17.1 0.0 0.0088 15.8 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_13 PF13166.6 gi|530548300|ref|YP_008428838.1| - 0.0044 15.7 0.3 0.069 11.8 0.1 2.0 2 0 0 2 2 2 1 AAA domain AAA_27 PF13514.6 gi|530548300|ref|YP_008428838.1| - 0.029 13.9 0.1 0.056 13.0 0.1 1.4 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|530548300|ref|YP_008428838.1| - 0.065 13.3 0.1 0.19 11.8 0.1 1.7 1 0 0 1 1 1 0 50S ribosome-binding GTPase ABC_tran PF00005.27 gi|530548300|ref|YP_008428838.1| - 0.12 12.9 0.0 0.25 11.9 0.0 1.6 1 0 0 1 1 1 0 ABC transporter BPD_transp_1 PF00528.22 gi|530548301|ref|YP_008428839.1| - 2.6e-21 76.2 12.9 2.6e-21 76.2 12.9 1.8 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_11 PF13531.6 gi|530548302|ref|YP_008428840.1| - 3.7e-36 125.0 0.0 4.8e-36 124.6 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|530548302|ref|YP_008428840.1| - 3.7e-11 43.5 0.8 1.1e-10 42.0 0.8 1.7 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 gi|530548302|ref|YP_008428840.1| - 0.031 13.7 0.0 0.097 12.1 0.0 1.7 2 0 0 2 2 2 0 Bacterial extracellular solute-binding protein AAA_26 PF13500.6 gi|530548303|ref|YP_008428841.1| - 0.08 12.8 0.3 0.23 11.3 0.1 1.9 2 0 0 2 2 2 0 AAA domain DUF1611 PF07755.11 gi|530548303|ref|YP_008428841.1| - 0.25 10.6 1.0 0.67 9.2 0.1 2.1 3 0 0 3 3 3 0 Domain of unknown function (DUF1611_C) P-loop domain ATP-cone PF03477.16 gi|530548304|ref|YP_008428842.1| - 3.6e-10 40.3 1.8 1.3e-09 38.5 0.2 2.5 2 1 0 2 2 2 1 ATP cone domain AAA_18 PF13238.6 gi|530548304|ref|YP_008428842.1| - 3.8e-06 27.5 0.0 1.2e-05 25.8 0.0 1.9 2 0 0 2 2 2 1 AAA domain Zeta_toxin PF06414.12 gi|530548304|ref|YP_008428842.1| - 1.7e-05 24.2 0.1 0.00018 20.8 0.0 2.5 1 1 1 2 2 2 1 Zeta toxin AAA_28 PF13521.6 gi|530548304|ref|YP_008428842.1| - 2.5e-05 24.6 0.4 9.7e-05 22.7 0.0 2.1 3 0 0 3 3 3 1 AAA domain AAA_33 PF13671.6 gi|530548304|ref|YP_008428842.1| - 5.1e-05 23.5 0.3 0.00034 20.8 0.1 2.5 2 1 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|530548304|ref|YP_008428842.1| - 0.0014 19.0 0.0 0.0028 18.1 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain AAA_5 PF07728.14 gi|530548304|ref|YP_008428842.1| - 0.0017 18.4 0.4 0.059 13.4 0.1 2.5 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_25 PF13481.6 gi|530548304|ref|YP_008428842.1| - 0.011 15.3 0.0 0.02 14.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain CbiA PF01656.23 gi|530548304|ref|YP_008428842.1| - 0.013 15.5 2.6 0.12 12.4 2.6 2.5 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|530548304|ref|YP_008428842.1| - 0.017 14.5 1.2 0.14 11.5 0.1 2.5 3 0 0 3 3 3 0 NUBPL iron-transfer P-loop NTPase RsgA_GTPase PF03193.16 gi|530548304|ref|YP_008428842.1| - 0.023 14.6 0.0 0.047 13.6 0.0 1.6 1 0 0 1 1 1 0 RsgA GTPase TsaE PF02367.17 gi|530548304|ref|YP_008428842.1| - 0.023 14.7 0.4 0.24 11.4 0.1 2.2 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE RuvB_N PF05496.12 gi|530548304|ref|YP_008428842.1| - 0.038 13.7 0.1 0.12 12.2 0.0 1.8 1 1 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain AAA_22 PF13401.6 gi|530548304|ref|YP_008428842.1| - 0.041 14.2 0.1 0.15 12.3 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA PF00004.29 gi|530548304|ref|YP_008428842.1| - 0.045 14.2 0.4 0.45 10.9 0.1 2.4 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) NACHT PF05729.12 gi|530548304|ref|YP_008428842.1| - 0.088 12.7 0.8 0.38 10.7 0.3 2.3 2 1 1 3 3 3 0 NACHT domain T2SSE PF00437.20 gi|530548304|ref|YP_008428842.1| - 0.094 11.8 0.0 0.18 10.8 0.0 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein RNA_helicase PF00910.22 gi|530548304|ref|YP_008428842.1| - 0.11 12.9 0.0 0.28 11.6 0.0 1.8 2 0 0 2 2 1 0 RNA helicase APS_kinase PF01583.20 gi|530548304|ref|YP_008428842.1| - 0.13 12.2 0.2 0.72 9.7 0.0 2.0 2 0 0 2 2 2 0 Adenylylsulphate kinase AAA_17 PF13207.6 gi|530548304|ref|YP_008428842.1| - 0.16 12.4 0.0 0.16 12.4 0.0 2.5 3 0 0 3 3 3 0 AAA domain AAA_29 PF13555.6 gi|530548304|ref|YP_008428842.1| - 0.18 11.6 0.0 0.34 10.7 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain SRP54 PF00448.22 gi|530548304|ref|YP_008428842.1| - 0.22 11.1 1.4 1.5 8.5 0.2 2.2 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain CBS PF00571.28 gi|530548305|ref|YP_008428843.1| - 6.2e-28 97.0 7.0 5.7e-16 58.7 0.6 2.1 2 0 0 2 2 2 2 CBS domain Metallophos PF00149.28 gi|530548306|ref|YP_008428844.1| - 6.6e-31 108.4 9.3 1.4e-21 78.0 4.7 2.4 2 0 0 2 2 2 2 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|530548306|ref|YP_008428844.1| - 3.6e-27 95.6 1.1 5.2e-17 62.5 0.8 2.6 2 1 0 2 2 2 2 Calcineurin-like phosphoesterase superfamily domain Metallophos_3 PF14582.6 gi|530548306|ref|YP_008428844.1| - 9.9e-05 21.8 2.2 0.33 10.3 0.1 3.1 3 1 0 3 3 3 2 Metallophosphoesterase, calcineurin superfamily PhoD PF09423.10 gi|530548306|ref|YP_008428844.1| - 0.00046 19.3 0.1 1.9 7.4 0.0 3.0 3 0 0 3 3 3 2 PhoD-like phosphatase DUF4847 PF16139.5 gi|530548307|ref|YP_008428845.1| - 0.049 13.6 0.3 0.093 12.6 0.1 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4847) RHD_dimer PF16179.5 gi|530548307|ref|YP_008428845.1| - 0.063 13.3 0.1 0.1 12.6 0.1 1.3 1 0 0 1 1 1 0 Rel homology dimerisation domain DUF1203 PF06718.11 gi|530548307|ref|YP_008428845.1| - 0.16 12.3 0.0 0.3 11.4 0.0 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF1203) TrkA_C PF02080.21 gi|530548308|ref|YP_008428846.1| - 8.9e-16 57.5 0.2 1.6e-15 56.7 0.2 1.5 1 0 0 1 1 1 1 TrkA-C domain PhoU PF01895.19 gi|530548308|ref|YP_008428846.1| - 2e-09 37.8 5.4 3.6e-09 36.9 5.4 1.4 1 0 0 1 1 1 1 PhoU domain PhoU PF01895.19 gi|530548309|ref|YP_008428847.1| - 1.6e-13 50.9 3.7 2.8e-13 50.1 3.7 1.4 1 0 0 1 1 1 1 PhoU domain TrkA_C PF02080.21 gi|530548309|ref|YP_008428847.1| - 3.2e-13 49.3 0.0 5.7e-13 48.5 0.0 1.5 1 0 0 1 1 1 1 TrkA-C domain PhoU_div PF01865.16 gi|530548309|ref|YP_008428847.1| - 0.0017 17.7 3.2 0.0025 17.2 3.2 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF47 MgtE PF01769.16 gi|530548310|ref|YP_008428848.1| - 1.5e-40 138.4 24.6 2.1e-22 79.8 9.5 3.6 4 0 0 4 4 4 2 Divalent cation transporter Hum_adeno_E3A PF05393.11 gi|530548310|ref|YP_008428848.1| - 0.025 14.6 0.6 1.8 8.6 0.1 2.8 3 0 0 3 3 3 0 Human adenovirus early E3A glycoprotein DUF2157 PF09925.9 gi|530548310|ref|YP_008428848.1| - 0.12 12.2 0.3 0.12 12.2 0.3 3.2 2 1 0 2 2 2 0 Predicted membrane protein (DUF2157) PEPCK_GTP PF00821.18 gi|530548311|ref|YP_008428849.1| - 7e-108 360.6 0.0 8.8e-108 360.3 0.0 1.1 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain PEPCK_N PF17297.2 gi|530548311|ref|YP_008428849.1| - 2.5e-60 203.8 0.0 3.4e-60 203.4 0.0 1.2 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxykinase N-terminal domain NTP_transferase PF00483.23 gi|530548312|ref|YP_008428850.1| - 4.5e-53 180.4 0.0 6.5e-53 179.8 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.24 gi|530548312|ref|YP_008428850.1| - 5.5e-20 70.3 11.8 5.6e-08 32.2 0.3 3.9 1 1 2 3 3 3 3 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.7 gi|530548312|ref|YP_008428850.1| - 5.9e-11 43.0 0.0 7.4e-11 42.7 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain DUF4954 PF16314.5 gi|530548312|ref|YP_008428850.1| - 0.00011 20.6 0.6 0.00011 20.6 0.6 1.4 2 0 0 2 2 2 1 Domain of unknown function (DUF4954) CTP_transf_3 PF02348.19 gi|530548312|ref|YP_008428850.1| - 0.0021 18.0 0.0 0.0043 17.0 0.0 1.4 1 0 0 1 1 1 1 Cytidylyltransferase Fucokinase PF07959.12 gi|530548312|ref|YP_008428850.1| - 0.041 12.8 0.1 0.47 9.3 0.1 2.1 2 0 0 2 2 2 0 L-fucokinase Hexapep_2 PF14602.6 gi|530548312|ref|YP_008428850.1| - 1.5 8.6 22.5 0.13 12.0 8.3 4.2 4 2 0 4 4 4 0 Hexapeptide repeat of succinyl-transferase PGM_PMM_I PF02878.16 gi|530548313|ref|YP_008428851.1| - 6.6e-07 29.1 0.0 1.2e-06 28.2 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Thymidylate_kin PF02223.17 gi|530548314|ref|YP_008428852.1| - 9.3e-53 178.7 0.0 1.1e-52 178.4 0.0 1.0 1 0 0 1 1 1 1 Thymidylate kinase AAA_28 PF13521.6 gi|530548314|ref|YP_008428852.1| - 6.6e-07 29.7 0.0 1.3e-06 28.7 0.0 1.5 1 1 0 1 1 1 1 AAA domain dNK PF01712.19 gi|530548314|ref|YP_008428852.1| - 4.1e-06 26.8 0.4 0.095 12.5 0.1 2.6 2 1 0 2 2 2 2 Deoxynucleoside kinase AAA_33 PF13671.6 gi|530548314|ref|YP_008428852.1| - 0.00066 19.9 0.0 0.001 19.2 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|530548314|ref|YP_008428852.1| - 0.00067 19.9 0.0 0.0026 18.0 0.0 1.9 1 1 1 2 2 2 1 AAA domain AAA_17 PF13207.6 gi|530548314|ref|YP_008428852.1| - 0.0022 18.4 0.0 0.005 17.3 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|530548314|ref|YP_008428852.1| - 0.0027 18.2 0.1 0.013 16.1 0.1 2.2 1 1 0 1 1 1 1 AAA domain SKI PF01202.22 gi|530548314|ref|YP_008428852.1| - 0.0032 17.6 0.5 0.93 9.6 0.1 2.2 2 0 0 2 2 2 2 Shikimate kinase SRP54 PF00448.22 gi|530548314|ref|YP_008428852.1| - 0.0035 17.0 0.0 0.007 16.0 0.0 1.4 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain KTI12 PF08433.10 gi|530548314|ref|YP_008428852.1| - 0.005 16.3 0.0 0.024 14.1 0.0 2.0 2 0 0 2 2 2 1 Chromatin associated protein KTI12 APS_kinase PF01583.20 gi|530548314|ref|YP_008428852.1| - 0.014 15.3 0.4 0.13 12.2 0.0 2.4 2 1 1 3 3 3 0 Adenylylsulphate kinase BBP1_C PF15272.6 gi|530548314|ref|YP_008428852.1| - 0.016 15.0 0.1 0.025 14.4 0.1 1.2 1 0 0 1 1 1 0 Spindle pole body component BBP1, C-terminal AAA_30 PF13604.6 gi|530548314|ref|YP_008428852.1| - 0.018 14.8 0.1 0.026 14.2 0.1 1.4 1 0 0 1 1 1 0 AAA domain PPK2 PF03976.14 gi|530548314|ref|YP_008428852.1| - 0.019 14.5 0.0 0.045 13.2 0.0 1.6 2 0 0 2 2 2 0 Polyphosphate kinase 2 (PPK2) CbiA PF01656.23 gi|530548314|ref|YP_008428852.1| - 0.047 13.7 0.0 0.057 13.5 0.0 1.4 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain LytR_C PF13399.6 gi|530548314|ref|YP_008428852.1| - 0.094 13.7 0.0 0.16 13.0 0.0 1.4 1 0 0 1 1 1 0 LytR cell envelope-related transcriptional attenuator ABC_tran PF00005.27 gi|530548314|ref|YP_008428852.1| - 0.14 12.7 0.1 0.35 11.4 0.0 1.8 2 0 0 2 2 2 0 ABC transporter Succ_CoA_lig PF13607.6 gi|530548315|ref|YP_008428853.1| - 2e-58 196.1 2.4 1.5e-57 193.2 1.2 2.5 2 0 0 2 2 2 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|530548315|ref|YP_008428853.1| - 1e-27 97.0 0.4 2.6e-25 89.2 0.1 2.4 2 0 0 2 2 2 2 CoA binding domain CoA_binding PF02629.19 gi|530548315|ref|YP_008428853.1| - 2.6e-15 56.9 1.7 4.4e-15 56.1 0.3 2.1 2 0 0 2 2 2 1 CoA binding domain DUF4849 PF16141.5 gi|530548315|ref|YP_008428853.1| - 0.01 15.1 0.1 0.026 13.8 0.1 1.7 2 0 0 2 2 2 0 Putative glycoside hydrolase Family 18, chitinase_18 GFO_IDH_MocA PF01408.22 gi|530548315|ref|YP_008428853.1| - 0.012 16.4 0.5 7.3 7.4 0.0 2.9 2 1 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold NAD_Gly3P_dh_N PF01210.23 gi|530548315|ref|YP_008428853.1| - 0.062 13.3 0.4 0.27 11.2 0.0 2.1 3 0 0 3 3 3 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus TPP_enzyme_C PF02775.21 gi|530548316|ref|YP_008428854.1| - 2.4e-30 105.3 0.2 5.2e-30 104.3 0.2 1.6 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.19 gi|530548316|ref|YP_008428854.1| - 4.7e-16 59.2 0.1 7.2e-16 58.6 0.1 1.2 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Fer4_7 PF12838.7 gi|530548316|ref|YP_008428854.1| - 2.6e-08 34.3 12.7 1.1e-06 29.1 11.7 3.3 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|530548316|ref|YP_008428854.1| - 5.4e-08 32.3 17.9 4.5e-06 26.2 2.6 3.1 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|530548316|ref|YP_008428854.1| - 3.2e-06 27.2 11.8 3.3e-06 27.2 10.2 1.9 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|530548316|ref|YP_008428854.1| - 5.8e-06 26.3 11.2 5.8e-06 26.3 11.2 2.0 3 0 0 3 3 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|530548316|ref|YP_008428854.1| - 3.6e-05 23.8 8.7 0.0004 20.5 9.2 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|530548316|ref|YP_008428854.1| - 0.00016 21.6 2.7 0.00016 21.6 2.7 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|530548316|ref|YP_008428854.1| - 0.00061 19.8 17.0 0.014 15.4 2.1 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Transket_pyr PF02779.24 gi|530548316|ref|YP_008428854.1| - 0.0027 17.4 0.7 0.022 14.5 0.2 2.3 2 0 0 2 2 2 1 Transketolase, pyrimidine binding domain DXP_synthase_N PF13292.6 gi|530548316|ref|YP_008428854.1| - 0.013 14.7 0.2 0.052 12.8 0.2 1.8 1 1 1 2 2 2 0 1-deoxy-D-xylulose-5-phosphate synthase Fer4_13 PF13370.6 gi|530548316|ref|YP_008428854.1| - 0.065 13.8 11.2 0.48 11.0 1.6 3.7 3 1 1 4 4 3 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_16 PF13484.6 gi|530548316|ref|YP_008428854.1| - 0.22 12.5 12.9 0.23 12.4 2.0 3.3 2 1 3 5 5 5 0 4Fe-4S double cluster binding domain Fer4_15 PF13459.6 gi|530548316|ref|YP_008428854.1| - 2 9.2 6.8 29 5.5 0.5 3.2 3 0 0 3 3 3 0 4Fe-4S single cluster domain Fer4_17 PF13534.6 gi|530548316|ref|YP_008428854.1| - 2.6 8.7 14.7 75 4.0 10.6 3.1 3 1 0 3 3 2 0 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|530548316|ref|YP_008428854.1| - 7.8 7.0 13.1 7.9e+02 0.6 13.1 2.7 1 1 0 1 1 1 0 4Fe-4S dicluster domain POR PF01558.18 gi|530548317|ref|YP_008428855.1| - 2.6e-41 141.6 0.1 3e-41 141.4 0.1 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase IstB_IS21 PF01695.17 gi|530548317|ref|YP_008428855.1| - 0.19 11.4 0.2 0.3 10.8 0.2 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein Hist_deacetyl PF00850.19 gi|530548318|ref|YP_008428856.1| - 2.4e-14 53.5 0.0 2.8e-14 53.3 0.0 1.1 1 0 0 1 1 1 1 Histone deacetylase domain MoaF_C PF17409.2 gi|530548318|ref|YP_008428856.1| - 0.11 12.2 0.0 0.16 11.6 0.0 1.4 1 0 0 1 1 1 0 MoaF C-terminal domain Hist_deacetyl PF00850.19 gi|530548319|ref|YP_008428857.1| - 0.032 13.7 0.0 0.032 13.7 0.0 1.0 1 0 0 1 1 1 0 Histone deacetylase domain Hist_deacetyl PF00850.19 gi|530548320|ref|YP_008428858.1| - 1.1e-06 28.3 0.0 1.1e-06 28.3 0.0 1.1 1 0 0 1 1 1 1 Histone deacetylase domain TBP PF00352.21 gi|530548321|ref|YP_008428859.1| - 1.1e-57 192.0 0.0 2.6e-28 97.8 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.8 gi|530548321|ref|YP_008428859.1| - 3.2e-08 33.6 0.0 0.00012 22.2 0.0 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) AIRS_C PF02769.22 gi|530548321|ref|YP_008428859.1| - 0.043 14.0 0.0 1.5 9.0 0.0 2.1 2 0 0 2 2 2 0 AIR synthase related protein, C-terminal domain S_layer_C PF05124.12 gi|530548323|ref|YP_008428861.1| - 4.4e-14 53.0 0.3 2.5e-13 50.5 0.3 1.8 1 1 0 1 1 1 1 S-layer like family, C-terminal region DUF4932 PF16286.5 gi|530548324|ref|YP_008428862.1| - 2.8e-17 63.0 16.1 9.7e-17 61.2 16.1 1.7 1 1 0 1 1 1 1 Domain of unknown function (DUF4932) Peptidase_M42 PF05343.14 gi|530548325|ref|YP_008428863.1| - 1.7e-90 303.0 0.2 2e-90 302.8 0.2 1.0 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.28 gi|530548325|ref|YP_008428863.1| - 2.6e-12 46.9 0.0 6.2e-12 45.7 0.0 1.7 1 1 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M28 PF04389.17 gi|530548325|ref|YP_008428863.1| - 1.6e-05 24.7 0.0 0.00047 19.9 0.0 2.3 2 1 0 2 2 2 1 Peptidase family M28 Peptidase_M18 PF02127.15 gi|530548325|ref|YP_008428863.1| - 0.0015 17.4 0.1 0.64 8.7 0.0 2.1 2 0 0 2 2 2 2 Aminopeptidase I zinc metalloprotease (M18) TauE PF01925.19 gi|530548326|ref|YP_008428864.1| - 7.3e-61 205.8 29.4 8.4e-61 205.6 29.4 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE YajC PF02699.15 gi|530548326|ref|YP_008428864.1| - 0.062 13.2 0.1 0.062 13.2 0.1 1.7 2 0 0 2 2 2 0 Preprotein translocase subunit TauE PF01925.19 gi|530548327|ref|YP_008428865.1| - 1.7e-55 188.3 26.0 1.9e-55 188.1 26.0 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE DUF4477 PF14780.6 gi|530548328|ref|YP_008428866.1| - 0.068 12.8 2.1 0.099 12.3 0.5 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4477) IL31 PF15209.6 gi|530548328|ref|YP_008428866.1| - 0.41 10.4 4.3 22 4.8 0.1 3.6 3 1 0 3 3 3 0 Interleukin 31 WbqC PF08889.11 gi|530548328|ref|YP_008428866.1| - 0.63 9.9 4.2 0.27 11.1 1.1 1.9 1 1 0 2 2 2 0 WbqC-like protein family TPR_2 PF07719.17 gi|530548328|ref|YP_008428866.1| - 8.4 6.8 7.0 11 6.4 1.8 3.7 4 1 0 4 4 4 0 Tetratricopeptide repeat TrmB PF01978.19 gi|530548329|ref|YP_008428867.1| - 4e-10 39.4 0.0 7.2e-10 38.6 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|530548329|ref|YP_008428867.1| - 1.8e-08 33.8 0.0 3.6e-08 32.8 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|530548329|ref|YP_008428867.1| - 1e-05 25.3 0.1 2e-05 24.4 0.1 1.4 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|530548329|ref|YP_008428867.1| - 0.00031 20.5 0.1 0.00053 19.7 0.1 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain Rrf2 PF02082.20 gi|530548329|ref|YP_008428867.1| - 0.0011 19.2 0.0 0.0023 18.3 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator Fe_dep_repress PF01325.19 gi|530548329|ref|YP_008428867.1| - 0.0015 18.7 0.1 0.0041 17.3 0.0 1.8 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain MarR PF01047.22 gi|530548329|ref|YP_008428867.1| - 0.0028 17.6 0.0 0.0056 16.6 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_23 PF13384.6 gi|530548329|ref|YP_008428867.1| - 0.008 16.0 0.2 0.014 15.1 0.2 1.4 1 0 0 1 1 1 1 Homeodomain-like domain HTH_AsnC-type PF13404.6 gi|530548329|ref|YP_008428867.1| - 0.0081 16.0 0.0 0.014 15.2 0.0 1.3 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_27 PF13463.6 gi|530548329|ref|YP_008428867.1| - 0.014 15.9 0.0 0.027 15.0 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_Tnp_ISL3 PF13542.6 gi|530548329|ref|YP_008428867.1| - 0.04 13.3 0.0 0.062 12.7 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 DUF4897 PF16238.5 gi|530548329|ref|YP_008428867.1| - 0.072 12.9 1.0 3.8 7.3 0.1 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4897) tRNA-synt_1g PF09334.11 gi|530548330|ref|YP_008428868.1| - 3.2e-160 533.2 0.0 4e-160 532.8 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (M) tRNA_bind PF01588.20 gi|530548330|ref|YP_008428868.1| - 3.2e-32 110.5 0.1 6.5e-32 109.5 0.1 1.5 1 0 0 1 1 1 1 Putative tRNA binding domain tRNA-synt_1 PF00133.22 gi|530548330|ref|YP_008428868.1| - 1.2e-16 60.2 0.1 2.9e-08 32.4 0.1 3.4 3 1 0 3 3 3 2 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|530548330|ref|YP_008428868.1| - 3.8e-13 49.6 0.1 7.2e-13 48.8 0.1 1.5 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1e PF01406.19 gi|530548330|ref|YP_008428868.1| - 0.00013 21.4 0.0 0.45 9.8 0.0 2.4 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain DZR PF12773.7 gi|530548330|ref|YP_008428868.1| - 0.017 15.2 4.1 0.032 14.3 4.1 1.4 1 0 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|530548330|ref|YP_008428868.1| - 2.5 7.6 11.9 11 5.6 0.3 3.3 2 1 0 3 3 3 0 zinc-ribbon domain PTPS PF01242.19 gi|530548332|ref|YP_008428870.1| - 9.4e-25 87.0 0.1 1.1e-24 86.7 0.1 1.0 1 0 0 1 1 1 1 6-pyruvoyl tetrahydropterin synthase QRPTase_C PF01729.19 gi|530548333|ref|YP_008428871.1| - 3.1e-27 95.4 0.0 4.7e-27 94.8 0.0 1.3 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain NAPRTase_C PF17956.1 gi|530548333|ref|YP_008428871.1| - 4.2e-07 30.4 0.0 1.3e-06 28.8 0.0 1.8 1 0 0 1 1 1 1 Nicotinate phosphoribosyltransferase C-terminal domain QRPTase_N PF02749.16 gi|530548333|ref|YP_008428871.1| - 4.3e-05 23.5 0.0 9.1e-05 22.4 0.0 1.5 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain NAPRTase_N PF17767.1 gi|530548333|ref|YP_008428871.1| - 0.0031 17.9 0.0 0.037 14.4 0.0 2.1 1 1 1 2 2 2 1 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain Zn-ribbon_8 PF09723.10 gi|530548333|ref|YP_008428871.1| - 0.019 15.1 0.3 0.042 14.0 0.3 1.6 1 0 0 1 1 1 0 Zinc ribbon domain NIR_SIR_ferr PF03460.17 gi|530548333|ref|YP_008428871.1| - 0.047 13.5 0.0 0.15 11.9 0.0 1.8 1 0 0 1 1 1 0 Nitrite/Sulfite reductase ferredoxin-like half domain DNA_ligase_ZBD PF03119.16 gi|530548333|ref|YP_008428871.1| - 0.091 12.8 1.6 0.43 10.6 0.6 2.2 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Fer4_13 PF13370.6 gi|530548334|ref|YP_008428872.1| - 1.9e-18 66.7 7.8 2.5e-18 66.3 7.8 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|530548334|ref|YP_008428872.1| - 1.6e-17 64.0 10.0 2.4e-17 63.4 10.0 1.3 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4 PF00037.27 gi|530548334|ref|YP_008428872.1| - 2e-09 36.9 9.4 1.2e-06 28.1 6.0 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|530548334|ref|YP_008428872.1| - 2e-07 30.8 9.3 4.8e-07 29.6 3.2 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_19 PF06902.11 gi|530548334|ref|YP_008428872.1| - 2.6e-07 30.6 1.7 3e-07 30.4 1.7 1.1 1 0 0 1 1 1 1 Divergent 4Fe-4S mono-cluster Fer4_7 PF12838.7 gi|530548334|ref|YP_008428872.1| - 2.3e-06 28.1 17.2 0.00073 20.1 7.1 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|530548334|ref|YP_008428872.1| - 3.6e-06 27.1 3.4 5.2e-06 26.6 0.9 2.2 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_2 PF12797.7 gi|530548334|ref|YP_008428872.1| - 7.6e-06 25.7 2.7 7.6e-06 25.7 2.7 2.1 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_9 PF13187.6 gi|530548334|ref|YP_008428872.1| - 9e-05 22.6 4.2 0.00017 21.7 4.2 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|530548334|ref|YP_008428872.1| - 9.1e-05 22.5 7.1 0.00021 21.3 7.1 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|530548334|ref|YP_008428872.1| - 0.00012 22.2 6.9 0.00032 20.8 6.9 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|530548334|ref|YP_008428872.1| - 0.0013 19.1 4.4 0.0021 18.4 4.4 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|530548334|ref|YP_008428872.1| - 0.0037 17.8 2.2 0.0071 16.9 2.2 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|530548334|ref|YP_008428872.1| - 0.0065 17.4 8.9 0.17 12.8 3.7 2.2 1 1 2 3 3 3 3 4Fe-4S double cluster binding domain Fer4_22 PF17179.4 gi|530548334|ref|YP_008428872.1| - 0.058 14.2 2.7 0.058 14.2 2.7 1.5 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|530548334|ref|YP_008428872.1| - 0.062 14.3 10.2 0.61 11.1 4.6 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_13 PF13370.6 gi|530548335|ref|YP_008428873.1| - 5.4e-18 65.3 7.2 6.1e-18 65.1 7.2 1.0 1 0 0 1 1 1 1 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|530548335|ref|YP_008428873.1| - 1.1e-15 58.0 7.6 1.3e-15 57.8 7.6 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4 PF00037.27 gi|530548335|ref|YP_008428873.1| - 0.00064 19.4 9.2 0.0027 17.5 2.0 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_19 PF06902.11 gi|530548335|ref|YP_008428873.1| - 0.00082 19.4 2.6 0.0012 18.9 2.6 1.3 1 1 0 1 1 1 1 Divergent 4Fe-4S mono-cluster Fer4_21 PF14697.6 gi|530548335|ref|YP_008428873.1| - 0.0095 16.0 7.0 0.048 13.8 7.2 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|530548335|ref|YP_008428873.1| - 0.013 15.6 4.7 0.021 15.0 4.7 1.4 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|530548335|ref|YP_008428873.1| - 0.026 15.1 3.3 0.11 13.1 3.6 1.8 1 1 2 3 3 3 0 4Fe-4S dicluster domain FeS_assembly_P PF01883.19 gi|530548336|ref|YP_008428874.1| - 5.2e-22 77.8 0.0 6.5e-22 77.5 0.0 1.1 1 0 0 1 1 1 1 Iron-sulfur cluster assembly protein NifU PF01106.17 gi|530548336|ref|YP_008428874.1| - 0.0095 16.1 0.1 0.072 13.3 0.1 2.0 1 1 1 2 2 2 1 NifU-like domain HMA PF00403.26 gi|530548336|ref|YP_008428874.1| - 0.42 11.1 2.2 1.1 9.8 0.1 2.6 2 2 0 2 2 2 0 Heavy-metal-associated domain DUF43 PF01861.16 gi|530548337|ref|YP_008428875.1| - 5.1e-119 395.9 0.3 6.4e-119 395.6 0.3 1.1 1 0 0 1 1 1 1 Branched-chain polyamine synthase A C-terminal domain N6-adenineMlase PF10237.9 gi|530548337|ref|YP_008428875.1| - 0.004 17.0 0.0 0.006 16.4 0.0 1.3 1 0 0 1 1 1 1 Probable N6-adenine methyltransferase DUF1217 PF06748.12 gi|530548337|ref|YP_008428875.1| - 0.013 15.6 0.0 0.019 15.0 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1217) Methyltr_RsmB-F PF01189.17 gi|530548337|ref|YP_008428875.1| - 0.13 11.9 0.0 0.24 11.0 0.0 1.4 1 0 0 1 1 1 0 16S rRNA methyltransferase RsmB/F Methyltransf_31 PF13847.6 gi|530548337|ref|YP_008428875.1| - 0.13 12.1 0.0 0.35 10.6 0.0 1.7 1 1 0 1 1 1 0 Methyltransferase domain SRP1_TIP1 PF00660.17 gi|530548337|ref|YP_008428875.1| - 0.16 12.0 0.0 0.55 10.3 0.0 1.9 2 0 0 2 2 2 0 Seripauperin and TIP1 family TP_methylase PF00590.20 gi|530548338|ref|YP_008428876.1| - 1.3e-20 74.3 0.0 1.6e-20 74.0 0.0 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases DUF1788 PF08747.11 gi|530548338|ref|YP_008428876.1| - 0.053 13.5 0.0 0.097 12.7 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1788) malic PF00390.19 gi|530548339|ref|YP_008428877.1| - 1.1e-30 106.8 0.6 1.3e-22 80.5 0.5 2.6 1 1 1 2 2 2 2 Malic enzyme, N-terminal domain Malic_M PF03949.15 gi|530548339|ref|YP_008428877.1| - 4.3e-26 91.7 4.4 3.2e-25 88.9 4.4 2.3 1 1 0 1 1 1 1 Malic enzyme, NAD binding domain Shikimate_DH PF01488.20 gi|530548339|ref|YP_008428877.1| - 0.00038 20.5 0.2 0.0012 18.9 0.2 1.9 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase AlaDh_PNT_C PF01262.21 gi|530548339|ref|YP_008428877.1| - 0.00052 19.4 1.9 0.00099 18.5 1.9 1.4 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain ThiF PF00899.21 gi|530548339|ref|YP_008428877.1| - 0.0011 18.4 1.8 0.0023 17.3 1.8 1.5 1 0 0 1 1 1 1 ThiF family ELFV_dehydrog PF00208.21 gi|530548339|ref|YP_008428877.1| - 0.0015 18.3 1.4 0.0044 16.8 0.7 2.0 1 1 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase FAD_binding_3 PF01494.19 gi|530548339|ref|YP_008428877.1| - 0.019 14.3 0.7 0.031 13.5 0.7 1.3 1 0 0 1 1 1 0 FAD binding domain NAD_Gly3P_dh_N PF01210.23 gi|530548339|ref|YP_008428877.1| - 0.11 12.5 0.1 0.26 11.2 0.1 1.7 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Band_7 PF01145.25 gi|530548339|ref|YP_008428877.1| - 0.12 12.4 0.0 0.43 10.6 0.0 2.0 2 0 0 2 2 2 0 SPFH domain / Band 7 family 2-Hacid_dh_C PF02826.19 gi|530548339|ref|YP_008428877.1| - 0.6 9.4 6.5 0.15 11.4 0.9 2.7 2 1 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Xan_ur_permease PF00860.20 gi|530548340|ref|YP_008428878.1| - 1.8e-46 158.6 37.5 2.2e-46 158.3 37.5 1.1 1 0 0 1 1 1 1 Permease family Sulfate_transp PF00916.20 gi|530548340|ref|YP_008428878.1| - 0.13 11.0 27.6 2.8 6.6 27.6 3.1 1 1 0 1 1 1 0 Sulfate permease family Fe_dep_repr_C PF02742.15 gi|530548341|ref|YP_008428879.1| - 9.9e-20 70.4 1.8 1.5e-19 69.8 0.9 1.7 1 1 1 2 2 2 1 Iron dependent repressor, metal binding and dimerisation domain Fe_dep_repress PF01325.19 gi|530548341|ref|YP_008428879.1| - 8.5e-18 64.3 0.5 1.5e-17 63.5 0.5 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain MarR_2 PF12802.7 gi|530548341|ref|YP_008428879.1| - 3.5e-06 26.8 0.0 6.4e-06 26.0 0.0 1.4 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|530548341|ref|YP_008428879.1| - 5.4e-06 26.2 0.0 1e-05 25.4 0.0 1.4 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|530548341|ref|YP_008428879.1| - 4.3e-05 23.3 0.4 7.2e-05 22.6 0.4 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 gi|530548341|ref|YP_008428879.1| - 0.00019 21.2 0.0 0.00048 19.9 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Rrf2 PF02082.20 gi|530548341|ref|YP_008428879.1| - 0.00034 20.9 0.0 0.0006 20.1 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator HTH_24 PF13412.6 gi|530548341|ref|YP_008428879.1| - 0.00044 19.8 0.0 0.00082 18.9 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.6 gi|530548341|ref|YP_008428879.1| - 0.00046 20.1 0.0 0.00082 19.3 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain DUF2250 PF10007.9 gi|530548341|ref|YP_008428879.1| - 0.0011 19.0 1.4 0.0025 17.9 1.4 1.5 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) TFIIE_alpha PF02002.17 gi|530548341|ref|YP_008428879.1| - 0.0011 18.8 3.7 0.0012 18.7 0.6 2.1 2 1 0 2 2 2 1 TFIIE alpha subunit DUF4423 PF14394.6 gi|530548341|ref|YP_008428879.1| - 0.0032 17.2 0.2 0.0048 16.6 0.2 1.5 1 1 0 1 1 1 1 Domain of unknown function (DUF4423) LexA_DNA_bind PF01726.16 gi|530548341|ref|YP_008428879.1| - 0.0034 17.1 0.3 0.022 14.5 0.0 2.5 3 1 0 3 3 2 1 LexA DNA binding domain IF2_N PF04760.15 gi|530548341|ref|YP_008428879.1| - 0.0039 17.0 0.0 0.012 15.4 0.0 1.8 1 0 0 1 1 1 1 Translation initiation factor IF-2, N-terminal region HTH_micro PF17007.5 gi|530548341|ref|YP_008428879.1| - 0.0058 15.5 0.9 0.0094 14.8 0.9 1.4 1 0 0 1 1 1 1 HTH-like HTH_36 PF13730.6 gi|530548341|ref|YP_008428879.1| - 0.0071 16.3 0.0 0.016 15.2 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.6 gi|530548341|ref|YP_008428879.1| - 0.0098 16.4 0.1 0.016 15.7 0.1 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_28 PF13518.6 gi|530548341|ref|YP_008428879.1| - 0.011 15.9 0.0 0.019 15.1 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_12 PF08461.10 gi|530548341|ref|YP_008428879.1| - 0.011 15.7 0.3 0.038 13.9 0.3 2.0 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain HTH_29 PF13551.6 gi|530548341|ref|YP_008428879.1| - 0.013 15.5 0.0 0.019 15.0 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn helix HTH_11 PF08279.12 gi|530548341|ref|YP_008428879.1| - 0.017 15.1 0.0 0.036 14.0 0.0 1.6 1 0 0 1 1 1 0 HTH domain HTH_10 PF04967.12 gi|530548341|ref|YP_008428879.1| - 0.024 14.4 0.0 0.54 10.1 0.0 2.6 2 0 0 2 2 2 0 HTH DNA binding domain Mnd1 PF03962.15 gi|530548341|ref|YP_008428879.1| - 0.027 14.8 1.4 0.2 12.0 0.2 2.3 2 0 0 2 2 2 0 Mnd1 HTH domain GntR PF00392.21 gi|530548341|ref|YP_008428879.1| - 0.028 14.1 0.0 0.048 13.3 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family Penicillinase_R PF03965.16 gi|530548341|ref|YP_008428879.1| - 0.051 13.9 1.1 0.46 10.8 0.1 2.1 2 0 0 2 2 2 0 Penicillinase repressor Mrr_N PF14338.6 gi|530548341|ref|YP_008428879.1| - 0.058 13.5 0.1 0.28 11.3 0.0 2.1 2 0 0 2 2 2 0 Mrr N-terminal domain HTH_Tnp_IS630 PF01710.16 gi|530548341|ref|YP_008428879.1| - 0.064 13.3 1.0 0.095 12.7 0.2 1.8 2 0 0 2 2 2 0 Transposase HTH_23 PF13384.6 gi|530548341|ref|YP_008428879.1| - 0.073 12.9 0.0 0.17 11.8 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain DDRGK PF09756.9 gi|530548341|ref|YP_008428879.1| - 0.078 12.6 0.1 0.078 12.6 0.1 2.3 2 2 0 2 2 2 0 DDRGK domain LPD22 PF18834.1 gi|530548341|ref|YP_008428879.1| - 0.097 12.9 0.0 4.2 7.6 0.0 2.2 2 0 0 2 2 2 0 Large polyvalent protein associated domain 22 Rio2_N PF09202.11 gi|530548341|ref|YP_008428879.1| - 0.098 12.9 1.1 2 8.7 0.2 2.1 2 0 0 2 2 2 0 Rio2, N-terminal POR PF01558.18 gi|530548342|ref|YP_008428880.1| - 4.6e-35 121.3 0.0 5.3e-35 121.1 0.0 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Methyltransf_25 PF13649.6 gi|530548343|ref|YP_008428881.1| - 2.5e-25 89.0 0.0 4e-25 88.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|530548343|ref|YP_008428881.1| - 1.5e-22 80.1 0.0 2.7e-22 79.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|530548343|ref|YP_008428881.1| - 1.4e-20 73.6 0.1 1.9e-20 73.2 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|530548343|ref|YP_008428881.1| - 6.2e-14 51.9 0.1 1e-13 51.2 0.1 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|530548343|ref|YP_008428881.1| - 1.8e-13 51.0 0.0 2.8e-13 50.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|530548343|ref|YP_008428881.1| - 3.5e-12 46.5 0.0 4.6e-12 46.1 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 gi|530548343|ref|YP_008428881.1| - 1.7e-08 34.1 0.1 2.1e-08 33.8 0.1 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase TehB PF03848.14 gi|530548343|ref|YP_008428881.1| - 4e-07 29.6 0.0 5.5e-07 29.2 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB MTS PF05175.14 gi|530548343|ref|YP_008428881.1| - 7.5e-07 28.9 0.0 1.1e-06 28.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_29 PF03141.16 gi|530548343|ref|YP_008428881.1| - 1.7e-05 23.6 0.0 2.3e-05 23.2 0.0 1.1 1 0 0 1 1 1 1 Putative S-adenosyl-L-methionine-dependent methyltransferase N6_N4_Mtase PF01555.18 gi|530548343|ref|YP_008428881.1| - 3.1e-05 23.8 0.3 0.0017 18.1 0.1 2.1 2 0 0 2 2 2 1 DNA methylase MetW PF07021.12 gi|530548343|ref|YP_008428881.1| - 3.3e-05 23.6 0.0 4.7e-05 23.1 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_15 PF09445.10 gi|530548343|ref|YP_008428881.1| - 5.5e-05 22.8 0.1 0.0015 18.1 0.1 2.1 1 1 1 2 2 2 1 RNA cap guanine-N2 methyltransferase Methyltransf_32 PF13679.6 gi|530548343|ref|YP_008428881.1| - 0.00016 21.7 0.0 0.00024 21.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_33 PF10017.9 gi|530548343|ref|YP_008428881.1| - 0.00017 20.9 0.0 0.00021 20.5 0.0 1.2 1 0 0 1 1 1 1 Histidine-specific methyltransferase, SAM-dependent Met_10 PF02475.16 gi|530548343|ref|YP_008428881.1| - 0.00031 20.5 0.2 0.001 18.8 0.1 1.8 1 1 1 2 2 2 1 Met-10+ like-protein FtsJ PF01728.19 gi|530548343|ref|YP_008428881.1| - 0.00068 19.8 0.0 0.0016 18.6 0.0 1.6 1 1 0 1 1 1 1 FtsJ-like methyltransferase RrnaAD PF00398.20 gi|530548343|ref|YP_008428881.1| - 0.0044 16.1 0.0 0.0045 16.1 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase CheR PF01739.18 gi|530548343|ref|YP_008428881.1| - 0.0057 16.1 0.1 2.1 7.8 0.0 2.3 1 1 1 2 2 2 2 CheR methyltransferase, SAM binding domain HGTP_anticodon PF03129.20 gi|530548343|ref|YP_008428881.1| - 0.0061 16.7 0.2 0.13 12.5 0.1 2.4 2 1 0 2 2 2 1 Anticodon binding domain Methyltransf_8 PF05148.15 gi|530548343|ref|YP_008428881.1| - 0.0063 16.4 0.0 0.015 15.2 0.0 1.8 1 1 0 1 1 1 1 Hypothetical methyltransferase DNA_methylase PF00145.17 gi|530548343|ref|YP_008428881.1| - 0.0078 15.6 0.1 0.012 15.0 0.1 1.3 1 0 0 1 1 1 1 C-5 cytosine-specific DNA methylase Pox_MCEL PF03291.16 gi|530548343|ref|YP_008428881.1| - 0.013 14.7 0.1 0.035 13.2 0.1 1.8 1 1 0 1 1 1 0 mRNA capping enzyme NodS PF05401.11 gi|530548343|ref|YP_008428881.1| - 0.013 15.1 0.0 0.016 14.8 0.0 1.2 1 0 0 1 1 1 0 Nodulation protein S (NodS) Methyltransf_5 PF01795.19 gi|530548343|ref|YP_008428881.1| - 0.014 14.9 0.0 0.032 13.7 0.0 1.5 2 0 0 2 2 2 0 MraW methylase family UPF0020 PF01170.18 gi|530548343|ref|YP_008428881.1| - 0.014 15.1 0.0 0.037 13.7 0.0 1.8 1 1 0 1 1 1 0 Putative RNA methylase family UPF0020 PrmA PF06325.13 gi|530548343|ref|YP_008428881.1| - 0.016 14.7 0.0 0.023 14.1 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Spermine_synth PF01564.17 gi|530548343|ref|YP_008428881.1| - 0.073 12.5 0.2 0.1 12.0 0.2 1.2 1 0 0 1 1 1 0 Spermine/spermidine synthase domain TPMT PF05724.11 gi|530548343|ref|YP_008428881.1| - 0.12 12.0 0.0 0.28 10.8 0.0 1.7 1 1 0 1 1 1 0 Thiopurine S-methyltransferase (TPMT) tRNA-synt_1f PF01921.18 gi|530548344|ref|YP_008428882.1| - 1.9e-138 461.3 0.9 2.6e-138 460.9 0.9 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (K) tRNA-synt_1g PF09334.11 gi|530548344|ref|YP_008428882.1| - 2.8e-08 32.9 0.7 0.0043 15.9 0.0 3.1 3 0 0 3 3 3 2 tRNA synthetases class I (M) tRNA-synt_1e PF01406.19 gi|530548344|ref|YP_008428882.1| - 0.00018 21.0 0.1 1.2 8.4 0.0 3.0 3 0 0 3 3 3 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1b PF00579.25 gi|530548344|ref|YP_008428882.1| - 0.0033 16.8 0.0 0.29 10.4 0.0 2.3 2 0 0 2 2 2 1 tRNA synthetases class I (W and Y) HypA PF01155.19 gi|530548344|ref|YP_008428882.1| - 0.0034 17.4 0.1 0.0077 16.2 0.1 1.6 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_10 PF10058.9 gi|530548344|ref|YP_008428882.1| - 0.015 15.0 0.5 0.033 13.9 0.5 1.6 1 0 0 1 1 1 0 Predicted integral membrane zinc-ribbon metal-binding protein zf-LITAF-like PF10601.9 gi|530548344|ref|YP_008428882.1| - 0.059 13.6 0.3 17 5.7 0.2 2.2 2 0 0 2 2 2 0 LITAF-like zinc ribbon domain zinc_ribbon_2 PF13240.6 gi|530548344|ref|YP_008428882.1| - 0.12 12.2 2.4 6.9 6.5 0.2 2.4 2 0 0 2 2 2 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|530548344|ref|YP_008428882.1| - 0.18 11.8 3.1 0.43 10.6 3.1 1.6 1 0 0 1 1 1 0 Transposase zinc-ribbon domain HCV_NS5a_1a PF08300.13 gi|530548344|ref|YP_008428882.1| - 0.22 11.7 0.6 0.44 10.7 0.6 1.4 1 0 0 1 1 1 0 Hepatitis C virus non-structural 5a zinc finger domain Tmemb_14 PF03647.13 gi|530548345|ref|YP_008428883.1| - 0.023 15.4 4.6 0.61 10.9 0.1 2.7 2 1 0 2 2 2 0 Transmembrane proteins 14C Phage_holin_4_1 PF05105.12 gi|530548345|ref|YP_008428883.1| - 0.033 14.3 0.3 0.033 14.3 0.3 1.6 2 0 0 2 2 2 0 Bacteriophage holin family DUF366 PF04017.12 gi|530548346|ref|YP_008428884.1| - 8.8e-68 227.4 0.9 9.7e-68 227.3 0.9 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF366) PEGA PF08308.11 gi|530548346|ref|YP_008428884.1| - 0.15 12.0 0.1 0.27 11.2 0.1 1.5 1 0 0 1 1 1 0 PEGA domain NIF PF03031.18 gi|530548347|ref|YP_008428885.1| - 1.4e-08 34.7 0.0 2.2e-08 34.0 0.0 1.3 1 1 0 1 1 1 1 NLI interacting factor-like phosphatase Acid_PPase PF12689.7 gi|530548347|ref|YP_008428885.1| - 6.9e-08 32.5 0.1 1.9e-07 31.1 0.1 1.7 1 1 0 1 1 1 1 Acid Phosphatase HAD_2 PF13419.6 gi|530548347|ref|YP_008428885.1| - 6.1e-07 29.7 0.0 0.0001 22.4 0.0 2.2 1 1 1 2 2 2 2 Haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|530548347|ref|YP_008428885.1| - 0.00016 22.2 0.7 0.022 15.1 0.0 2.2 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase DUF2608 PF11019.8 gi|530548347|ref|YP_008428885.1| - 0.0011 18.5 1.2 0.026 14.0 0.1 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF2608) Hydrolase PF00702.26 gi|530548347|ref|YP_008428885.1| - 0.0013 19.1 0.0 0.28 11.4 0.0 2.1 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase DUF917 PF06032.12 gi|530548347|ref|YP_008428885.1| - 0.15 10.8 0.0 0.19 10.5 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF917) Pribosyltran_N PF13793.6 gi|530548348|ref|YP_008428886.1| - 1.4e-25 89.5 0.0 2.1e-22 79.2 0.0 2.2 2 0 0 2 2 2 2 N-terminal domain of ribose phosphate pyrophosphokinase Pribosyltran PF00156.27 gi|530548348|ref|YP_008428886.1| - 2.3e-20 72.7 0.5 3.8e-19 68.7 0.2 2.2 2 0 0 2 2 2 1 Phosphoribosyl transferase domain Pribosyl_synth PF14572.6 gi|530548348|ref|YP_008428886.1| - 1.2e-17 64.6 1.7 2e-17 63.8 1.2 1.6 1 1 1 2 2 2 1 Phosphoribosyl synthetase-associated domain UPRTase PF14681.6 gi|530548348|ref|YP_008428886.1| - 3e-07 30.1 0.1 4.5e-07 29.5 0.1 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase EIIA-man PF03610.16 gi|530548348|ref|YP_008428886.1| - 0.0066 16.7 0.7 2.7 8.3 0.0 3.1 3 0 0 3 3 3 1 PTS system fructose IIA component PRTase_2 PF15609.6 gi|530548348|ref|YP_008428886.1| - 0.015 14.8 0.1 0.021 14.3 0.1 1.3 1 0 0 1 1 1 0 Phosphoribosyl transferase DUF1614 PF07758.11 gi|530548349|ref|YP_008428887.1| - 3.9e-57 193.0 9.8 3.9e-57 193.0 9.8 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF1614) LrgB PF04172.16 gi|530548349|ref|YP_008428887.1| - 0.054 13.0 7.5 0.18 11.3 7.5 2.1 1 1 0 1 1 1 0 LrgB-like family ASCH PF04266.14 gi|530548350|ref|YP_008428888.1| - 1.4e-09 38.5 0.2 1.8e-09 38.2 0.2 1.1 1 0 0 1 1 1 1 ASCH domain Sdh5 PF03937.16 gi|530548350|ref|YP_008428888.1| - 0.023 14.7 0.0 0.034 14.1 0.0 1.2 1 0 0 1 1 1 0 Flavinator of succinate dehydrogenase Lactamase_B_3 PF13483.6 gi|530548351|ref|YP_008428889.1| - 7.5e-31 107.2 0.1 9.2e-31 106.9 0.1 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|530548351|ref|YP_008428889.1| - 1.1e-17 64.3 0.0 1.6e-17 63.7 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|530548351|ref|YP_008428889.1| - 2.5e-09 37.4 0.4 8e-09 35.8 0.4 1.8 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Rad51 PF08423.11 gi|530548352|ref|YP_008428890.1| - 3.6e-38 131.3 0.1 5.3e-38 130.7 0.1 1.3 1 1 0 1 1 1 1 Rad51 ATPase PF06745.13 gi|530548352|ref|YP_008428890.1| - 4.6e-11 42.5 0.4 6.9e-11 41.9 0.4 1.3 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|530548352|ref|YP_008428890.1| - 1.8e-09 37.4 0.1 1.5e-08 34.5 0.1 2.0 1 1 0 1 1 1 1 AAA domain RecA PF00154.21 gi|530548352|ref|YP_008428890.1| - 3.3e-09 36.6 0.0 4.1e-09 36.3 0.0 1.2 1 0 0 1 1 1 1 recA bacterial DNA recombination protein AAA_24 PF13479.6 gi|530548352|ref|YP_008428890.1| - 7.9e-07 29.0 0.1 1.2e-06 28.4 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|530548352|ref|YP_008428890.1| - 0.00022 21.8 0.1 0.00076 20.0 0.1 1.8 1 1 1 2 2 2 1 AAA domain DnaB_C PF03796.15 gi|530548352|ref|YP_008428890.1| - 0.021 14.1 1.6 1.5 8.1 0.2 2.1 1 1 1 2 2 2 0 DnaB-like helicase C terminal domain DUF402 PF04167.13 gi|530548353|ref|YP_008428891.1| - 5.4e-14 52.1 6.5 9e-14 51.4 3.7 2.4 2 0 0 2 2 2 1 Protein of unknown function (DUF402) RNase_E_G PF10150.9 gi|530548353|ref|YP_008428891.1| - 1.4e-11 44.4 0.0 2.2e-11 43.7 0.0 1.3 1 0 0 1 1 1 1 Ribonuclease E/G family S1 PF00575.23 gi|530548353|ref|YP_008428891.1| - 0.27 11.6 0.1 0.27 11.6 0.1 3.1 3 0 0 3 3 3 0 S1 RNA binding domain TrmB PF01978.19 gi|530548354|ref|YP_008428892.1| - 0.00031 20.6 1.3 0.0031 17.3 0.2 2.7 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB DegS PF05384.11 gi|530548354|ref|YP_008428892.1| - 0.024 14.1 0.8 0.058 12.9 0.1 2.1 2 1 0 2 2 2 0 Sensor protein DegS Radical_SAM PF04055.21 gi|530548355|ref|YP_008428893.1| - 4.9e-29 101.9 0.2 1e-28 100.8 0.1 1.6 2 0 0 2 2 2 1 Radical SAM superfamily Mob_synth_C PF06463.13 gi|530548355|ref|YP_008428893.1| - 3.4e-22 78.8 0.1 5.3e-22 78.1 0.1 1.3 1 0 0 1 1 1 1 Molybdenum Cofactor Synthesis C Fer4_12 PF13353.6 gi|530548355|ref|YP_008428893.1| - 8.1e-09 35.9 0.0 1.9e-08 34.7 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|530548355|ref|YP_008428893.1| - 3e-07 30.6 0.0 7.2e-07 29.4 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain BSD PF03909.17 gi|530548355|ref|YP_008428893.1| - 0.031 14.3 0.1 0.065 13.2 0.1 1.5 1 0 0 1 1 1 0 BSD domain DUF777 PF05606.11 gi|530548355|ref|YP_008428893.1| - 0.085 12.6 0.0 0.19 11.5 0.0 1.5 1 0 0 1 1 1 0 Borrelia burgdorferi protein of unknown function (DUF777) Cytochrome_CBB3 PF13442.6 gi|530548355|ref|YP_008428893.1| - 0.15 12.4 0.0 4.3 7.7 0.0 2.7 2 0 0 2 2 2 0 Cytochrome C oxidase, cbb3-type, subunit III DUF835 PF05763.12 gi|530548356|ref|YP_008428894.1| - 4.6e-35 120.3 0.0 6.9e-35 119.7 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF835) Peptidase_A8 PF01252.18 gi|530548356|ref|YP_008428894.1| - 0.073 13.3 1.0 0.29 11.4 1.0 2.0 1 1 0 1 1 1 0 Signal peptidase (SPase) II TnpB_IS66 PF05717.13 gi|530548356|ref|YP_008428894.1| - 0.12 12.3 0.0 1.3 9.0 0.0 2.1 2 0 0 2 2 2 0 IS66 Orf2 like protein Met_10 PF02475.16 gi|530548357|ref|YP_008428895.1| - 5.2e-42 143.9 0.2 8.5e-42 143.2 0.1 1.4 1 1 0 1 1 1 1 Met-10+ like-protein Trm5_N PF18093.1 gi|530548357|ref|YP_008428895.1| - 4.2e-08 33.0 1.5 1.8e-07 30.9 1.5 2.1 1 0 0 1 1 1 1 tRNA methyltransferase 5 N-terminal domain Nepo_coat_C PF03688.14 gi|530548357|ref|YP_008428895.1| - 0.0011 18.8 0.0 0.0023 17.8 0.0 1.5 1 0 0 1 1 1 1 Nepovirus coat protein, C-terminal domain Methyltrans_SAM PF10672.9 gi|530548357|ref|YP_008428895.1| - 0.0067 15.6 0.0 0.01 15.0 0.0 1.2 1 0 0 1 1 1 1 S-adenosylmethionine-dependent methyltransferase Methyltransf_25 PF13649.6 gi|530548357|ref|YP_008428895.1| - 0.02 15.6 0.0 0.08 13.7 0.0 2.0 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_31 PF13847.6 gi|530548357|ref|YP_008428895.1| - 0.044 13.6 0.1 0.49 10.2 0.0 2.4 2 1 0 2 2 2 0 Methyltransferase domain MTS PF05175.14 gi|530548357|ref|YP_008428895.1| - 0.064 12.8 0.0 0.11 12.0 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase small domain PrmA PF06325.13 gi|530548357|ref|YP_008428895.1| - 0.11 11.9 0.0 0.2 11.0 0.0 1.4 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) AAA PF00004.29 gi|530548358|ref|YP_008428896.1| - 1.7e-14 54.4 1.3 2.7e-14 53.7 0.0 2.0 2 1 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.15 gi|530548358|ref|YP_008428896.1| - 9.9e-13 48.4 0.3 5.2e-12 46.1 0.0 2.4 2 1 1 3 3 3 1 Rad17 P-loop domain AAA_14 PF13173.6 gi|530548358|ref|YP_008428896.1| - 3.1e-07 30.5 1.7 5.8e-07 29.6 0.0 2.3 3 0 0 3 3 2 1 AAA domain AAA_22 PF13401.6 gi|530548358|ref|YP_008428896.1| - 2.9e-06 27.6 0.1 0.0024 18.1 0.0 3.1 2 1 1 3 3 3 2 AAA domain RuvB_N PF05496.12 gi|530548358|ref|YP_008428896.1| - 3.6e-06 26.8 0.0 7e-06 25.9 0.0 1.5 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|530548358|ref|YP_008428896.1| - 2.1e-05 25.0 1.1 0.00011 22.7 0.0 2.7 2 1 0 2 2 2 1 AAA ATPase domain AAA_5 PF07728.14 gi|530548358|ref|YP_008428896.1| - 2.6e-05 24.2 0.0 0.0004 20.4 0.0 2.5 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) Zeta_toxin PF06414.12 gi|530548358|ref|YP_008428896.1| - 0.00027 20.3 0.0 0.00064 19.1 0.0 1.6 1 0 0 1 1 1 1 Zeta toxin DUF815 PF05673.13 gi|530548358|ref|YP_008428896.1| - 0.00068 18.9 0.0 0.00068 18.9 0.0 2.2 3 0 0 3 3 2 1 Protein of unknown function (DUF815) T2SSE PF00437.20 gi|530548358|ref|YP_008428896.1| - 0.00077 18.6 0.5 0.0017 17.5 0.0 1.8 2 0 0 2 2 1 1 Type II/IV secretion system protein PPV_E1_C PF00519.17 gi|530548358|ref|YP_008428896.1| - 0.0013 17.7 0.0 0.0023 16.8 0.0 1.4 1 0 0 1 1 1 1 Papillomavirus helicase AAA_25 PF13481.6 gi|530548358|ref|YP_008428896.1| - 0.0019 17.8 0.1 0.0062 16.1 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_24 PF13479.6 gi|530548358|ref|YP_008428896.1| - 0.0021 17.8 0.0 0.0057 16.4 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|530548358|ref|YP_008428896.1| - 0.0026 17.9 0.0 0.0062 16.7 0.0 1.8 1 1 0 1 1 1 1 AAA domain ResIII PF04851.15 gi|530548358|ref|YP_008428896.1| - 0.0027 17.8 2.2 0.0098 15.9 0.0 2.7 2 1 1 3 3 3 1 Type III restriction enzyme, res subunit DNA_pol3_delta PF06144.13 gi|530548358|ref|YP_008428896.1| - 0.0039 17.0 0.7 0.04 13.7 0.0 2.8 2 1 0 2 2 2 1 DNA polymerase III, delta subunit AAA_18 PF13238.6 gi|530548358|ref|YP_008428896.1| - 0.0065 17.0 1.2 0.021 15.4 0.0 2.6 2 1 0 2 2 1 1 AAA domain AAA_30 PF13604.6 gi|530548358|ref|YP_008428896.1| - 0.007 16.1 0.0 0.027 14.2 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|530548358|ref|YP_008428896.1| - 0.0075 16.7 0.0 0.0075 16.7 0.0 3.1 4 0 0 4 4 1 1 AAA domain AAA_28 PF13521.6 gi|530548358|ref|YP_008428896.1| - 0.012 15.8 1.4 0.042 14.1 0.0 2.4 2 0 0 2 2 2 0 AAA domain AAA_11 PF13086.6 gi|530548358|ref|YP_008428896.1| - 0.014 15.2 0.0 0.014 15.2 0.0 2.8 2 1 0 2 2 1 0 AAA domain AAA_assoc_2 PF16193.5 gi|530548358|ref|YP_008428896.1| - 0.015 15.6 0.5 0.052 13.9 0.1 2.2 2 0 0 2 2 1 0 AAA C-terminal domain TsaE PF02367.17 gi|530548358|ref|YP_008428896.1| - 0.028 14.4 0.0 0.058 13.4 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE SRP54 PF00448.22 gi|530548358|ref|YP_008428896.1| - 0.028 14.0 0.0 0.059 13.0 0.0 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_7 PF12775.7 gi|530548358|ref|YP_008428896.1| - 0.032 13.8 0.0 0.061 12.8 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region NAC PF01849.18 gi|530548358|ref|YP_008428896.1| - 0.047 13.7 1.2 0.11 12.4 1.2 1.7 1 0 0 1 1 1 0 NAC domain AAA_6 PF12774.7 gi|530548358|ref|YP_008428896.1| - 0.057 12.4 0.2 0.19 10.7 0.0 1.8 2 0 0 2 2 2 0 Hydrolytic ATP binding site of dynein motor region AAA_19 PF13245.6 gi|530548358|ref|YP_008428896.1| - 0.06 13.7 0.1 0.06 13.7 0.1 2.6 2 2 1 3 3 3 0 AAA domain AAA_29 PF13555.6 gi|530548358|ref|YP_008428896.1| - 0.11 12.3 0.0 0.2 11.4 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain Viral_helicase1 PF01443.18 gi|530548358|ref|YP_008428896.1| - 0.15 11.8 0.0 0.31 10.7 0.0 1.5 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase ABC_tran PF00005.27 gi|530548358|ref|YP_008428896.1| - 0.2 12.2 0.0 0.2 12.2 0.0 2.6 2 1 1 3 3 2 0 ABC transporter AnfO_nitrog PF09582.10 gi|530548358|ref|YP_008428896.1| - 0.48 9.7 8.9 1.5 8.1 8.9 1.8 1 0 0 1 1 1 0 Iron only nitrogenase protein AnfO (AnfO_nitrog) Hydin_ADK PF17213.3 gi|530548358|ref|YP_008428896.1| - 0.72 10.1 0.0 0.72 10.1 0.0 2.2 2 0 0 2 2 1 0 Hydin Adenylate kinase-like domain DUF1664 PF07889.12 gi|530548358|ref|YP_008428896.1| - 1.7 8.7 4.7 4.6 7.3 4.7 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) Intein_splicing PF14890.6 gi|530548359|ref|YP_008428897.1| - 1.1e-55 187.2 0.9 1.8e-21 76.5 0.1 3.4 3 0 0 3 3 3 3 Intein splicing domain LAGLIDADG_3 PF14528.6 gi|530548359|ref|YP_008428897.1| - 4.6e-50 167.9 6.6 1.5e-18 66.9 0.2 7.1 7 0 0 7 7 6 6 LAGLIDADG-like domain Rep_fac_C PF08542.11 gi|530548359|ref|YP_008428897.1| - 4e-20 72.0 0.2 1.5e-19 70.2 0.1 2.1 2 0 0 2 2 1 1 Replication factor C C-terminal domain HTH_3 PF01381.22 gi|530548359|ref|YP_008428897.1| - 1.8e-09 37.5 5.2 7.6e-07 29.1 0.1 4.6 6 0 0 6 6 3 1 Helix-turn-helix Hom_end PF05204.14 gi|530548359|ref|YP_008428897.1| - 5.1e-07 29.8 0.1 0.015 15.5 0.0 5.4 6 0 0 6 6 5 1 Homing endonuclease MarR_2 PF12802.7 gi|530548359|ref|YP_008428897.1| - 1.4e-06 28.0 0.3 8.4e-05 22.4 0.1 3.4 3 0 0 3 3 3 1 MarR family TrmB PF01978.19 gi|530548359|ref|YP_008428897.1| - 1.8e-06 27.8 1.4 8.4e-06 25.6 0.5 2.7 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB DNA_pol3_delta2 PF13177.6 gi|530548359|ref|YP_008428897.1| - 4.7e-06 26.5 1.6 0.015 15.0 0.0 3.7 4 0 0 4 4 3 1 DNA polymerase III, delta subunit HTH_24 PF13412.6 gi|530548359|ref|YP_008428897.1| - 5.9e-06 25.8 0.5 0.00011 21.7 0.2 3.0 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding HTH_19 PF12844.7 gi|530548359|ref|YP_008428897.1| - 1.1e-05 25.3 1.3 0.0019 18.2 0.1 3.5 2 0 0 2 2 2 1 Helix-turn-helix domain RuvB_N PF05496.12 gi|530548359|ref|YP_008428897.1| - 4.3e-05 23.3 0.2 0.00058 19.6 0.0 2.7 3 0 0 3 3 3 1 Holliday junction DNA helicase RuvB P-loop domain AAA PF00004.29 gi|530548359|ref|YP_008428897.1| - 8.2e-05 23.0 0.6 0.059 13.8 0.0 3.5 3 0 0 3 3 2 1 ATPase family associated with various cellular activities (AAA) DprA_WH PF17782.1 gi|530548359|ref|YP_008428897.1| - 0.00032 20.8 0.0 0.00088 19.3 0.0 1.7 1 0 0 1 1 1 1 DprA winged helix domain AAA_assoc_2 PF16193.5 gi|530548359|ref|YP_008428897.1| - 0.00033 20.9 0.3 0.0015 18.8 0.3 2.2 1 0 0 1 1 1 1 AAA C-terminal domain LAGLIDADG_WhiA PF14527.6 gi|530548359|ref|YP_008428897.1| - 0.00036 20.6 0.6 1.4 9.0 0.1 4.0 2 1 1 3 3 3 1 WhiA LAGLIDADG-like domain Hint PF01079.20 gi|530548359|ref|YP_008428897.1| - 0.00063 19.3 0.0 0.44 10.0 0.0 3.0 3 0 0 3 3 3 1 Hint module Rad17 PF03215.15 gi|530548359|ref|YP_008428897.1| - 0.00087 19.3 0.0 0.0023 17.9 0.0 1.6 1 0 0 1 1 1 1 Rad17 P-loop domain LexA_DNA_bind PF01726.16 gi|530548359|ref|YP_008428897.1| - 0.0017 18.1 0.8 0.0073 16.0 0.8 2.2 1 0 0 1 1 1 1 LexA DNA binding domain MarR PF01047.22 gi|530548359|ref|YP_008428897.1| - 0.002 18.0 0.3 0.0061 16.5 0.3 1.9 1 0 0 1 1 1 1 MarR family HTH_26 PF13443.6 gi|530548359|ref|YP_008428897.1| - 0.0035 17.7 0.6 0.67 10.4 0.0 3.8 4 0 0 4 4 3 1 Cro/C1-type HTH DNA-binding domain AAA_16 PF13191.6 gi|530548359|ref|YP_008428897.1| - 0.005 17.3 0.7 0.89 9.9 0.0 2.9 3 0 0 3 3 2 1 AAA ATPase domain PT-HINT PF07591.11 gi|530548359|ref|YP_008428897.1| - 0.0053 17.0 0.0 3.3 7.9 0.0 3.3 2 0 0 2 2 2 1 Pretoxin HINT domain HTH_34 PF13601.6 gi|530548359|ref|YP_008428897.1| - 0.0098 16.1 0.1 0.045 13.9 0.0 2.1 2 0 0 2 2 1 1 Winged helix DNA-binding domain DUF4364 PF14277.6 gi|530548359|ref|YP_008428897.1| - 0.015 15.1 0.0 0.1 12.4 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4364) HTH_45 PF14947.6 gi|530548359|ref|YP_008428897.1| - 0.016 15.2 0.0 0.092 12.7 0.0 2.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA_pol3_delta PF06144.13 gi|530548359|ref|YP_008428897.1| - 0.018 14.8 0.3 0.16 11.8 0.0 2.5 2 0 0 2 2 2 0 DNA polymerase III, delta subunit HTH_Crp_2 PF13545.6 gi|530548359|ref|YP_008428897.1| - 0.021 14.8 0.4 0.1 12.6 0.4 2.3 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_36 PF13730.6 gi|530548359|ref|YP_008428897.1| - 0.023 14.7 0.1 0.075 13.0 0.1 1.9 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_IclR PF09339.10 gi|530548359|ref|YP_008428897.1| - 0.024 14.5 0.0 0.2 11.5 0.0 2.7 1 0 0 1 1 1 0 IclR helix-turn-helix domain Mg_chelatase PF01078.21 gi|530548359|ref|YP_008428897.1| - 0.032 13.6 0.0 3.2 7.1 0.0 2.5 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI HNH_repeat PF18780.1 gi|530548359|ref|YP_008428897.1| - 0.055 13.3 0.2 0.22 11.4 0.2 2.2 1 0 0 1 1 1 0 Homing endonuclease repeat Rrf2 PF02082.20 gi|530548359|ref|YP_008428897.1| - 0.13 12.6 0.1 0.4 11.1 0.1 1.9 1 0 0 1 1 1 0 Transcriptional regulator HTH_20 PF12840.7 gi|530548359|ref|YP_008428897.1| - 0.14 12.3 2.7 0.25 11.4 0.1 2.9 3 0 0 3 3 2 0 Helix-turn-helix domain Sigma70_r4 PF04545.16 gi|530548359|ref|YP_008428897.1| - 0.24 11.0 2.2 2.3 7.8 1.0 2.9 2 0 0 2 2 2 0 Sigma-70, region 4 GntR PF00392.21 gi|530548359|ref|YP_008428897.1| - 0.46 10.2 3.3 5.4 6.8 0.3 3.4 3 0 0 3 3 3 0 Bacterial regulatory proteins, gntR family HTH_28 PF13518.6 gi|530548359|ref|YP_008428897.1| - 2.3 8.4 5.2 4.1 7.6 0.2 4.0 5 0 0 5 5 3 0 Helix-turn-helix domain Aminotran_1_2 PF00155.21 gi|530548360|ref|YP_008428898.1| - 1.8e-72 244.5 0.0 2e-72 244.3 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.20 gi|530548360|ref|YP_008428898.1| - 1.5e-06 27.0 0.0 2.4e-06 26.3 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.21 gi|530548360|ref|YP_008428898.1| - 7.6e-06 25.4 0.0 1.3e-05 24.6 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.19 gi|530548360|ref|YP_008428898.1| - 2.5e-05 23.4 0.0 4e-05 22.7 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V OKR_DC_1 PF01276.20 gi|530548360|ref|YP_008428898.1| - 0.00078 18.3 0.0 0.0012 17.7 0.0 1.2 1 0 0 1 1 1 1 Orn/Lys/Arg decarboxylase, major domain DegT_DnrJ_EryC1 PF01041.17 gi|530548360|ref|YP_008428898.1| - 0.0028 17.0 0.0 0.021 14.1 0.0 2.0 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family DUF835 PF05763.12 gi|530548361|ref|YP_008428899.1| - 7.3e-36 122.9 0.0 1e-35 122.4 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF835) tRNA_int_endo PF01974.17 gi|530548362|ref|YP_008428900.1| - 1.6e-30 105.0 1.1 3e-30 104.1 1.1 1.4 1 0 0 1 1 1 1 tRNA intron endonuclease, catalytic C-terminal domain tRNA_int_endo_N PF02778.14 gi|530548362|ref|YP_008428900.1| - 2.4e-19 68.8 0.4 4.5e-19 67.9 0.4 1.5 1 0 0 1 1 1 1 tRNA intron endonuclease, N-terminal domain Sen15 PF09631.10 gi|530548362|ref|YP_008428900.1| - 0.014 15.6 0.0 0.021 15.1 0.0 1.4 1 0 0 1 1 1 0 Sen15 protein Acetyltransf_1 PF00583.25 gi|530548363|ref|YP_008428901.1| - 3.7e-28 98.1 0.1 4.6e-28 97.8 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|530548363|ref|YP_008428901.1| - 2.9e-18 66.1 0.1 4e-18 65.6 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|530548363|ref|YP_008428901.1| - 3.4e-17 62.6 0.1 4e-17 62.3 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|530548363|ref|YP_008428901.1| - 4.3e-11 42.6 0.0 6.1e-11 42.1 0.0 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_4 PF13420.7 gi|530548363|ref|YP_008428901.1| - 1.2e-09 38.5 0.0 1.3e-09 38.3 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|530548363|ref|YP_008428901.1| - 6e-09 36.0 0.0 1.8e-07 31.3 0.0 2.1 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.6 gi|530548363|ref|YP_008428901.1| - 4.7e-08 32.8 0.0 1.6e-07 31.1 0.0 1.8 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|530548363|ref|YP_008428901.1| - 4.4e-06 27.4 0.0 6.4e-06 26.9 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain GNAT_acetyltran PF12746.7 gi|530548363|ref|YP_008428901.1| - 0.00013 21.7 0.0 0.00016 21.3 0.0 1.1 1 0 0 1 1 1 1 GNAT acetyltransferase Acetyltransf_6 PF13480.7 gi|530548363|ref|YP_008428901.1| - 0.00013 22.1 0.0 0.00018 21.7 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|530548363|ref|YP_008428901.1| - 0.00014 21.9 0.0 0.00022 21.3 0.0 1.3 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_15 PF17013.5 gi|530548363|ref|YP_008428901.1| - 0.0088 15.5 0.0 0.023 14.2 0.0 1.5 1 1 0 1 1 1 1 Putative acetyl-transferase Acetyltransf_18 PF18014.1 gi|530548363|ref|YP_008428901.1| - 0.12 12.2 0.1 0.41 10.5 0.1 1.7 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Alpha-amylase PF00128.24 gi|530548364|ref|YP_008428902.1| - 3.3e-41 142.0 0.1 3.1e-23 82.9 0.0 2.1 1 1 1 2 2 2 2 Alpha amylase, catalytic domain hDGE_amylase PF14701.6 gi|530548364|ref|YP_008428902.1| - 1e-17 64.4 0.0 1.8e-13 50.4 0.0 2.1 1 1 1 2 2 2 2 Glycogen debranching enzyme, glucanotransferase domain Bac_A_amyl_C PF18612.1 gi|530548364|ref|YP_008428902.1| - 3.6e-06 26.7 1.0 3.6e-06 26.7 1.0 1.7 2 0 0 2 2 2 1 Bacterial Alpha amylase C-terminal domain GHL6 PF14871.6 gi|530548364|ref|YP_008428902.1| - 0.00024 21.3 0.0 0.00052 20.2 0.0 1.5 1 0 0 1 1 1 1 Hypothetical glycosyl hydrolase 6 Melibiase PF02065.18 gi|530548364|ref|YP_008428902.1| - 0.0035 16.3 0.0 0.0056 15.7 0.0 1.2 1 0 0 1 1 1 1 Melibiase DUF4125 PF13526.6 gi|530548364|ref|YP_008428902.1| - 0.045 13.4 0.2 1.8 8.1 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF4125) DUF4838 PF16126.5 gi|530548364|ref|YP_008428902.1| - 0.049 13.0 0.0 0.078 12.3 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4838) DUF87 PF01935.17 gi|530548365|ref|YP_008428903.1| - 3.2e-53 181.2 0.4 3.2e-53 181.2 0.4 2.3 1 1 1 2 2 2 1 Helicase HerA, central domain HAS-barrel PF09378.10 gi|530548365|ref|YP_008428903.1| - 3.8e-17 62.2 1.5 2.4e-16 59.7 0.2 3.0 3 0 0 3 3 3 1 HAS barrel domain DUF853 PF05872.12 gi|530548365|ref|YP_008428903.1| - 5.1e-07 28.7 0.8 0.0003 19.5 0.1 2.8 2 1 1 3 3 3 2 Bacterial protein of unknown function (DUF853) TrwB_AAD_bind PF10412.9 gi|530548365|ref|YP_008428903.1| - 2.1e-05 23.7 0.0 0.0014 17.6 0.0 2.5 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain DEAD PF00270.29 gi|530548365|ref|YP_008428903.1| - 0.0012 18.7 0.1 0.76 9.5 0.0 2.5 2 0 0 2 2 2 2 DEAD/DEAH box helicase DUF1323 PF07037.11 gi|530548365|ref|YP_008428903.1| - 0.0046 17.3 1.0 0.087 13.2 0.1 2.5 2 0 0 2 2 2 1 Putative transcription regulator (DUF1323) Prefoldin PF02996.17 gi|530548365|ref|YP_008428903.1| - 0.029 14.3 5.9 3.3 7.6 0.0 2.9 2 1 0 2 2 2 0 Prefoldin subunit FtsK_SpoIIIE PF01580.18 gi|530548365|ref|YP_008428903.1| - 0.043 13.2 1.5 3.6 6.9 0.0 2.3 2 0 0 2 2 2 0 FtsK/SpoIIIE family AAA_22 PF13401.6 gi|530548365|ref|YP_008428903.1| - 0.11 12.8 0.1 6.7 7.0 0.1 2.8 3 0 0 3 3 3 0 AAA domain Prominin PF05478.11 gi|530548365|ref|YP_008428903.1| - 0.14 10.1 0.1 0.23 9.4 0.1 1.2 1 0 0 1 1 1 0 Prominin Syntaxin-6_N PF09177.11 gi|530548365|ref|YP_008428903.1| - 0.27 11.8 3.1 0.61 10.7 0.2 3.0 3 0 0 3 3 3 0 Syntaxin 6, N-terminal DUF724 PF05266.14 gi|530548365|ref|YP_008428903.1| - 1.5 8.6 5.7 0.32 10.8 1.5 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF724) Metallophos PF00149.28 gi|530548366|ref|YP_008428904.1| - 5.3e-16 59.7 0.0 1.1e-15 58.7 0.0 1.6 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|530548366|ref|YP_008428904.1| - 1.3e-12 48.2 0.0 6.1e-12 46.0 0.0 2.0 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain NIF3 PF01784.18 gi|530548366|ref|YP_008428904.1| - 0.14 11.8 0.0 0.15 11.6 0.0 1.2 1 0 0 1 1 1 0 NIF3 (NGG1p interacting factor 3) Citrate_synt PF00285.21 gi|530548366|ref|YP_008428904.1| - 0.22 10.6 0.3 0.37 9.8 0.3 1.3 1 0 0 1 1 1 0 Citrate synthase, C-terminal domain AAA_23 PF13476.6 gi|530548367|ref|YP_008428905.1| - 2.2e-17 64.3 28.6 2.2e-17 64.3 28.6 8.6 1 1 5 6 6 5 1 AAA domain AAA_15 PF13175.6 gi|530548367|ref|YP_008428905.1| - 1.1e-12 48.3 91.5 1.4e-11 44.7 32.2 3.9 1 1 1 2 2 1 1 AAA ATPase domain Rad50_zn_hook PF04423.14 gi|530548367|ref|YP_008428905.1| - 9.9e-12 44.5 0.6 9.9e-12 44.5 0.6 10.9 13 3 2 15 15 10 1 Rad50 zinc hook motif AAA_21 PF13304.6 gi|530548367|ref|YP_008428905.1| - 4.2e-09 36.7 17.1 1.4e-05 25.1 0.1 4.3 3 2 2 5 5 4 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_13 PF13166.6 gi|530548367|ref|YP_008428905.1| - 8.4e-09 34.6 103.8 0.0015 17.3 31.0 5.4 2 1 3 5 5 5 3 AAA domain DUF3584 PF12128.8 gi|530548367|ref|YP_008428905.1| - 3.7e-07 28.1 41.0 3.7e-07 28.1 41.0 3.1 2 1 1 3 3 3 1 Protein of unknown function (DUF3584) AAA_29 PF13555.6 gi|530548367|ref|YP_008428905.1| - 9.3e-07 28.5 0.0 1.9e-06 27.5 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|530548367|ref|YP_008428905.1| - 2.6e-05 23.8 70.4 0.00044 19.8 70.4 2.7 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain Baculo_PEP_C PF04513.12 gi|530548367|ref|YP_008428905.1| - 0.00013 22.0 28.8 0.051 13.6 4.2 6.4 4 4 1 5 5 5 2 Baculovirus polyhedron envelope protein, PEP, C terminus EzrA PF06160.12 gi|530548367|ref|YP_008428905.1| - 0.00019 19.8 35.7 0.00019 19.8 35.7 4.8 1 1 3 4 4 4 2 Septation ring formation regulator, EzrA ABC_tran PF00005.27 gi|530548367|ref|YP_008428905.1| - 0.00027 21.5 32.9 6.7 7.2 5.9 6.2 2 2 0 2 2 2 0 ABC transporter NPV_P10 PF05531.12 gi|530548367|ref|YP_008428905.1| - 0.00081 19.8 38.3 0.018 15.5 0.8 8.4 4 2 3 7 7 7 2 Nucleopolyhedrovirus P10 protein Spc7 PF08317.11 gi|530548367|ref|YP_008428905.1| - 0.0009 18.2 145.8 0.0012 17.8 24.5 6.6 1 1 4 6 6 5 3 Spc7 kinetochore protein SbcCD_C PF13558.6 gi|530548367|ref|YP_008428905.1| - 0.0022 18.2 0.0 0.0056 16.9 0.0 1.7 1 0 0 1 1 1 1 Putative exonuclease SbcCD, C subunit Spectrin PF00435.21 gi|530548367|ref|YP_008428905.1| - 0.0025 18.3 7.9 0.0025 18.3 7.9 7.8 2 2 4 6 6 5 2 Spectrin repeat LXG PF04740.12 gi|530548367|ref|YP_008428905.1| - 0.0034 17.1 16.7 0.0034 17.1 16.7 6.7 2 2 4 6 6 5 2 LXG domain of WXG superfamily HemX PF04375.14 gi|530548367|ref|YP_008428905.1| - 0.0037 16.6 4.2 0.0037 16.6 4.2 7.1 2 2 5 7 7 7 1 HemX, putative uroporphyrinogen-III C-methyltransferase Syntaxin_2 PF14523.6 gi|530548367|ref|YP_008428905.1| - 0.0046 17.3 10.4 0.0046 17.3 10.4 8.3 1 1 6 7 7 5 1 Syntaxin-like protein Cluap1 PF10234.9 gi|530548367|ref|YP_008428905.1| - 0.0055 16.1 3.0 0.0055 16.1 3.0 7.7 1 1 5 6 6 3 1 Clusterin-associated protein-1 TACC_C PF05010.14 gi|530548367|ref|YP_008428905.1| - 0.0056 16.5 20.3 0.0056 16.5 20.3 5.8 3 2 3 6 6 5 2 Transforming acidic coiled-coil-containing protein (TACC), C-terminal DUF1664 PF07889.12 gi|530548367|ref|YP_008428905.1| - 0.0088 16.1 7.8 0.0088 16.1 7.8 8.2 4 3 4 8 8 8 4 Protein of unknown function (DUF1664) Laminin_II PF06009.12 gi|530548367|ref|YP_008428905.1| - 0.013 15.5 82.7 0.025 14.6 3.1 7.0 3 2 4 7 7 7 0 Laminin Domain II GAS PF13851.6 gi|530548367|ref|YP_008428905.1| - 0.024 14.0 158.3 0.022 14.1 44.7 6.8 1 1 5 6 6 6 0 Growth-arrest specific micro-tubule binding APG17 PF04108.12 gi|530548367|ref|YP_008428905.1| - 0.04 13.0 78.6 0.041 13.0 4.2 6.1 1 1 4 5 5 4 0 Autophagy protein Apg17 FtsK_SpoIIIE PF01580.18 gi|530548367|ref|YP_008428905.1| - 0.059 12.7 0.0 0.059 12.7 0.0 3.8 5 0 0 5 5 5 0 FtsK/SpoIIIE family DUF4407 PF14362.6 gi|530548367|ref|YP_008428905.1| - 0.13 11.6 81.0 0.073 12.4 6.0 5.0 1 1 2 4 4 4 0 Domain of unknown function (DUF4407) Snapin_Pallidin PF14712.6 gi|530548367|ref|YP_008428905.1| - 0.37 11.2 98.5 0.53 10.7 4.1 8.1 3 3 5 8 8 8 0 Snapin/Pallidin MscS_porin PF12795.7 gi|530548367|ref|YP_008428905.1| - 0.42 10.1 100.0 0.32 10.5 14.5 5.0 2 2 3 5 5 5 0 Mechanosensitive ion channel porin domain RsgA_GTPase PF03193.16 gi|530548367|ref|YP_008428905.1| - 0.71 9.8 0.0 0.71 9.8 0.0 4.7 6 1 1 7 7 4 0 RsgA GTPase WXG100 PF06013.12 gi|530548367|ref|YP_008428905.1| - 0.91 9.8 23.5 0.16 12.2 0.7 7.8 5 4 2 7 7 7 0 Proteins of 100 residues with WXG AAA_16 PF13191.6 gi|530548367|ref|YP_008428905.1| - 1 9.7 0.0 1 9.7 0.0 5.6 3 2 0 3 3 1 0 AAA ATPase domain FUSC PF04632.12 gi|530548367|ref|YP_008428905.1| - 1.1 7.7 16.0 0.61 8.6 2.8 3.1 2 1 0 2 2 2 0 Fusaric acid resistance protein family DUF948 PF06103.11 gi|530548367|ref|YP_008428905.1| - 2.2 8.6 41.7 1.2 9.5 0.5 7.9 3 3 4 7 7 7 0 Bacterial protein of unknown function (DUF948) PilJ PF13675.6 gi|530548367|ref|YP_008428905.1| - 8 6.5 32.4 7.9 6.5 2.1 6.4 2 2 6 8 8 8 0 Type IV pili methyl-accepting chemotaxis transducer N-term BLOC1_2 PF10046.9 gi|530548367|ref|YP_008428905.1| - 8.4 6.8 104.8 0.039 14.2 4.0 10.1 3 3 6 9 9 8 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Mce4_CUP1 PF11887.8 gi|530548367|ref|YP_008428905.1| - 9.9 5.5 6.0 21 4.4 0.0 3.5 4 1 0 4 4 4 0 Cholesterol uptake porter CUP1 of Mce4, putative NurA PF09376.10 gi|530548368|ref|YP_008428906.1| - 4.8e-54 183.6 3.0 7.3e-54 183.0 3.0 1.3 1 0 0 1 1 1 1 NurA domain DegS PF05384.11 gi|530548368|ref|YP_008428906.1| - 0.022 14.2 1.8 0.065 12.7 0.5 2.4 2 0 0 2 2 2 0 Sensor protein DegS DUF4268 PF14088.6 gi|530548368|ref|YP_008428906.1| - 0.19 11.6 0.9 3.1 7.7 0.0 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4268) TGT PF01702.18 gi|530548369|ref|YP_008428907.1| - 3.4e-78 263.3 0.0 4.6e-78 262.8 0.0 1.1 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase TGT_C1 PF14809.6 gi|530548369|ref|YP_008428907.1| - 9.6e-40 134.8 3.5 2.1e-39 133.7 1.6 2.3 2 0 0 2 2 2 1 C1 domain of tRNA-guanine transglycosylase dimerisation TGT_C2 PF14810.6 gi|530548369|ref|YP_008428907.1| - 4.7e-23 81.1 0.0 4.8e-22 77.9 0.0 2.7 2 0 0 2 2 2 1 Patch-forming domain C2 of tRNA-guanine transglycosylase PUA PF01472.20 gi|530548369|ref|YP_008428907.1| - 3.9e-17 62.0 0.1 1.8e-16 59.8 0.1 2.2 2 0 0 2 2 2 1 PUA domain UPF0113 PF03657.13 gi|530548369|ref|YP_008428907.1| - 0.00029 21.1 0.0 0.00072 19.8 0.0 1.7 1 0 0 1 1 1 1 UPF0113 PUA domain PUA_3 PF17785.1 gi|530548369|ref|YP_008428907.1| - 0.0003 20.5 0.1 0.082 12.7 0.0 3.3 3 0 0 3 3 3 1 PUA-like domain ThiS-like PF14453.6 gi|530548369|ref|YP_008428907.1| - 0.05 13.7 3.2 0.33 11.0 0.4 3.6 4 1 0 4 4 4 0 ThiS-like ubiquitin Glycos_transf_2 PF00535.26 gi|530548370|ref|YP_008428908.1| - 4.2e-38 130.8 0.0 5.9e-38 130.3 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|530548370|ref|YP_008428908.1| - 8.5e-35 120.7 0.0 1.1e-34 120.4 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 gi|530548370|ref|YP_008428908.1| - 2.6e-17 63.4 0.1 4.7e-17 62.6 0.1 1.4 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.6 gi|530548370|ref|YP_008428908.1| - 1.9e-14 53.5 0.0 2.8e-14 53.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_2 PF10111.9 gi|530548370|ref|YP_008428908.1| - 3e-12 46.6 0.0 7e-12 45.4 0.0 1.5 2 0 0 2 2 2 1 Glycosyltransferase like family 2 Chitin_synth_2 PF03142.15 gi|530548370|ref|YP_008428908.1| - 6.7e-05 21.7 0.0 0.31 9.6 0.0 3.0 2 1 1 3 3 3 2 Chitin synthase Glyco_tranf_2_4 PF13704.6 gi|530548370|ref|YP_008428908.1| - 0.0047 17.4 0.0 0.0093 16.5 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase family 2 SOR PF07682.11 gi|530548370|ref|YP_008428908.1| - 0.11 11.4 0.0 0.16 10.9 0.0 1.2 1 0 0 1 1 1 0 Sulphur oxygenase reductase UPF0180 PF03698.13 gi|530548371|ref|YP_008428909.1| - 0.071 13.3 0.1 0.11 12.6 0.1 1.3 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0180) Lon_C PF05362.13 gi|530548372|ref|YP_008428910.1| - 8.2e-37 126.7 3.9 1.4e-36 126.0 3.9 1.4 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain AAA_32 PF13654.6 gi|530548372|ref|YP_008428910.1| - 3.4e-25 88.8 0.0 1.4e-18 67.1 0.1 3.0 3 0 0 3 3 3 2 AAA domain Sigma54_activat PF00158.26 gi|530548372|ref|YP_008428910.1| - 7.3e-18 64.8 0.1 3.7e-11 43.0 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain Mg_chelatase PF01078.21 gi|530548372|ref|YP_008428910.1| - 3.6e-17 62.4 0.1 7.6e-09 35.3 0.1 2.3 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_5 PF07728.14 gi|530548372|ref|YP_008428910.1| - 1.3e-11 44.6 0.1 0.00022 21.3 0.0 2.9 3 0 0 3 3 2 2 AAA domain (dynein-related subfamily) ChlI PF13541.6 gi|530548372|ref|YP_008428910.1| - 7.4e-11 42.0 1.5 1.6e-10 40.9 0.9 1.9 2 0 0 2 2 1 1 Subunit ChlI of Mg-chelatase LAGLIDADG_3 PF14528.6 gi|530548372|ref|YP_008428910.1| - 2.5e-07 30.9 2.4 7.7e-05 22.9 0.0 3.3 3 0 0 3 3 2 1 LAGLIDADG-like domain AAA PF00004.29 gi|530548372|ref|YP_008428910.1| - 5.6e-07 30.1 0.0 0.066 13.6 0.0 3.0 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) MCM PF00493.23 gi|530548372|ref|YP_008428910.1| - 6.8e-07 28.6 0.0 0.016 14.3 0.0 2.6 2 0 0 2 2 2 2 MCM P-loop domain AAA_22 PF13401.6 gi|530548372|ref|YP_008428910.1| - 7e-06 26.4 0.0 0.00082 19.7 0.0 2.7 2 0 0 2 2 2 1 AAA domain RuvB_N PF05496.12 gi|530548372|ref|YP_008428910.1| - 7.1e-06 25.8 0.1 0.085 12.6 0.1 2.7 2 0 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain Sigma54_activ_2 PF14532.6 gi|530548372|ref|YP_008428910.1| - 4.2e-05 23.7 0.0 0.25 11.5 0.0 2.6 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_3 PF07726.11 gi|530548372|ref|YP_008428910.1| - 0.0002 21.2 0.0 0.15 12.0 0.0 2.4 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_7 PF12775.7 gi|530548372|ref|YP_008428910.1| - 0.00045 19.8 0.0 0.00092 18.8 0.0 1.4 1 0 0 1 1 1 1 P-loop containing dynein motor region AAA_30 PF13604.6 gi|530548372|ref|YP_008428910.1| - 0.0019 18.0 0.0 0.079 12.7 0.0 2.5 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|530548372|ref|YP_008428910.1| - 0.0023 18.3 0.0 0.0088 16.4 0.0 2.0 2 0 0 2 2 1 1 AAA ATPase domain NACHT PF05729.12 gi|530548372|ref|YP_008428910.1| - 0.0052 16.7 0.1 0.015 15.2 0.0 1.8 2 0 0 2 2 1 1 NACHT domain AAA_19 PF13245.6 gi|530548372|ref|YP_008428910.1| - 0.0063 16.9 0.0 1.9 8.8 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_lid_3 PF17862.1 gi|530548372|ref|YP_008428910.1| - 0.017 14.9 0.1 0.16 11.8 0.0 2.5 2 0 0 2 2 2 0 AAA+ lid domain S_4TM PF18159.1 gi|530548372|ref|YP_008428910.1| - 0.023 14.0 0.5 0.044 13.1 0.1 1.6 2 0 0 2 2 2 0 SMODS-associating 4TM effector domain DUF815 PF05673.13 gi|530548372|ref|YP_008428910.1| - 0.027 13.6 0.0 0.37 9.9 0.0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF815) AAA_PrkA PF08298.11 gi|530548372|ref|YP_008428910.1| - 0.029 13.3 0.4 1.7 7.5 0.0 2.8 3 0 0 3 3 3 0 PrkA AAA domain AAA_10 PF12846.7 gi|530548372|ref|YP_008428910.1| - 0.037 13.0 0.0 0.25 10.2 0.0 2.3 2 0 0 2 2 2 0 AAA-like domain PhoH PF02562.16 gi|530548372|ref|YP_008428910.1| - 0.06 12.8 0.0 0.22 11.0 0.0 1.9 2 0 0 2 2 2 0 PhoH-like protein ABC_tran PF00005.27 gi|530548372|ref|YP_008428910.1| - 0.11 13.0 0.0 0.37 11.3 0.0 2.0 1 0 0 1 1 1 0 ABC transporter IstB_IS21 PF01695.17 gi|530548372|ref|YP_008428910.1| - 0.12 12.1 0.0 0.31 10.8 0.0 1.7 1 0 0 1 1 1 0 IstB-like ATP binding protein Phage_terminase PF10668.9 gi|530548372|ref|YP_008428910.1| - 0.15 12.1 0.4 0.56 10.3 0.4 1.9 1 0 0 1 1 1 0 Phage terminase small subunit AAA_29 PF13555.6 gi|530548372|ref|YP_008428910.1| - 0.17 11.6 0.0 0.41 10.4 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain Ac81 PF05820.11 gi|530548372|ref|YP_008428910.1| - 0.28 10.7 1.9 0.5 9.9 1.9 1.3 1 0 0 1 1 1 0 Baculoviridae AC81 HTH_Tnp_1 PF01527.20 gi|530548372|ref|YP_008428910.1| - 5.2 7.5 5.5 0.93 9.9 0.4 2.4 3 0 0 3 3 2 0 Transposase DUF2666 PF10869.8 gi|530548373|ref|YP_008428911.1| - 2.1e-52 176.9 10.0 1.7e-38 131.9 1.7 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF2666) DUF4846 PF16138.5 gi|530548373|ref|YP_008428911.1| - 0.11 12.0 0.0 0.17 11.4 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (4846) zf-DBF PF07535.12 gi|530548373|ref|YP_008428911.1| - 0.11 12.6 0.2 3.9 7.7 0.0 2.5 2 0 0 2 2 2 0 DBF zinc finger Ribonuc_L-PSP PF01042.21 gi|530548374|ref|YP_008428912.1| - 2.4e-45 153.4 0.1 2.7e-45 153.3 0.1 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP YtxH PF12732.7 gi|530548374|ref|YP_008428912.1| - 0.1 13.1 0.0 0.15 12.6 0.0 1.3 1 0 0 1 1 1 0 YtxH-like protein LrgA PF03788.14 gi|530548375|ref|YP_008428913.1| - 5e-31 106.5 5.3 5.9e-31 106.3 5.3 1.1 1 0 0 1 1 1 1 LrgA family 2HCT PF03390.15 gi|530548375|ref|YP_008428913.1| - 0.0037 16.0 4.1 0.0041 15.8 4.1 1.0 1 0 0 1 1 1 1 2-hydroxycarboxylate transporter family CbiQ PF02361.16 gi|530548375|ref|YP_008428913.1| - 0.012 15.3 3.8 0.016 14.8 3.8 1.2 1 0 0 1 1 1 0 Cobalt transport protein YbjM PF11045.8 gi|530548375|ref|YP_008428913.1| - 0.073 13.2 1.5 0.099 12.8 1.5 1.2 1 0 0 1 1 1 0 Putative inner membrane protein of Enterobacteriaceae 7TMR-DISM_7TM PF07695.11 gi|530548375|ref|YP_008428913.1| - 0.13 12.1 6.4 0.16 11.9 6.4 1.0 1 0 0 1 1 1 0 7TM diverse intracellular signalling Pox_A14 PF05767.12 gi|530548375|ref|YP_008428913.1| - 0.32 11.2 1.9 0.28 11.4 0.3 1.8 1 1 1 2 2 2 0 Poxvirus virion envelope protein A14 LrgB PF04172.16 gi|530548376|ref|YP_008428914.1| - 2.9e-75 252.5 15.1 3.3e-75 252.3 15.1 1.0 1 0 0 1 1 1 1 LrgB-like family Phage_r1t_holin PF16945.5 gi|530548376|ref|YP_008428914.1| - 3 8.1 7.3 1.4 9.2 0.3 3.2 3 1 0 3 3 3 0 Putative lactococcus lactis phage r1t holin TFX_C PF14601.6 gi|530548377|ref|YP_008428915.1| - 3.6e-22 78.1 0.2 5e-22 77.7 0.2 1.2 1 0 0 1 1 1 1 DNA_binding protein, TFX, C-term Sigma70_r4 PF04545.16 gi|530548377|ref|YP_008428915.1| - 5.6e-07 29.0 2.4 5.6e-07 29.0 2.4 1.8 2 0 0 2 2 2 1 Sigma-70, region 4 GerE PF00196.19 gi|530548377|ref|YP_008428915.1| - 2.2e-06 27.1 1.0 3.5e-06 26.5 1.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family Sigma70_r4_2 PF08281.12 gi|530548377|ref|YP_008428915.1| - 3.8e-05 23.3 0.5 8.3e-05 22.2 0.5 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_38 PF13936.6 gi|530548377|ref|YP_008428915.1| - 0.00048 19.8 0.5 0.00099 18.8 0.5 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 gi|530548377|ref|YP_008428915.1| - 0.00049 19.8 0.5 0.0011 18.7 0.4 1.7 2 0 0 2 2 2 1 Homeodomain-like domain HTH_37 PF13744.6 gi|530548377|ref|YP_008428915.1| - 0.0007 19.5 0.6 0.0021 18.0 0.3 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain KORA PF16509.5 gi|530548377|ref|YP_008428915.1| - 0.0019 18.5 0.3 0.0031 17.8 0.3 1.5 1 0 0 1 1 1 1 TrfB plasmid transcriptional repressor HTH_3 PF01381.22 gi|530548377|ref|YP_008428915.1| - 0.0053 16.8 1.1 0.012 15.7 1.1 1.7 1 1 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 gi|530548377|ref|YP_008428915.1| - 0.0081 16.2 1.2 0.013 15.5 0.4 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|530548377|ref|YP_008428915.1| - 0.011 16.0 0.2 0.03 14.7 0.1 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_7 PF02796.15 gi|530548377|ref|YP_008428915.1| - 0.013 15.5 0.1 0.036 14.1 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase MarR PF01047.22 gi|530548377|ref|YP_008428915.1| - 0.025 14.5 0.1 0.068 13.1 0.1 1.8 1 0 0 1 1 1 0 MarR family UPF0122 PF04297.14 gi|530548377|ref|YP_008428915.1| - 0.027 14.7 1.2 0.042 14.1 0.4 1.8 2 0 0 2 2 2 0 Putative helix-turn-helix protein, YlxM / p13 like HTH_28 PF13518.6 gi|530548377|ref|YP_008428915.1| - 0.029 14.5 0.3 0.054 13.6 0.3 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain KorB PF08535.10 gi|530548377|ref|YP_008428915.1| - 0.041 13.9 0.1 0.074 13.1 0.1 1.5 1 0 0 1 1 1 0 KorB domain HTH_29 PF13551.6 gi|530548377|ref|YP_008428915.1| - 0.044 13.8 0.1 0.073 13.1 0.1 1.4 1 0 0 1 1 1 0 Winged helix-turn helix SRP54 PF00448.22 gi|530548377|ref|YP_008428915.1| - 0.057 13.0 0.1 0.067 12.8 0.1 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain MarR_2 PF12802.7 gi|530548377|ref|YP_008428915.1| - 0.077 12.9 0.1 0.16 11.9 0.1 1.6 1 0 0 1 1 1 0 MarR family Pex14_N PF04695.13 gi|530548377|ref|YP_008428915.1| - 0.24 12.1 0.3 0.4 11.3 0.3 1.4 1 0 0 1 1 1 0 Peroxisomal membrane anchor protein (Pex14p) conserved region DUF553 PF04473.12 gi|530548378|ref|YP_008428916.1| - 1.4e-42 144.8 0.0 2.3e-42 144.2 0.0 1.3 1 0 0 1 1 1 1 Transglutaminase-like domain Transglut_core PF01841.19 gi|530548378|ref|YP_008428916.1| - 0.0055 17.1 0.0 0.015 15.8 0.0 1.8 1 1 0 1 1 1 1 Transglutaminase-like superfamily GAS PF13851.6 gi|530548380|ref|YP_008428918.1| - 0.00033 20.1 5.4 0.00034 20.0 5.4 1.0 1 0 0 1 1 1 1 Growth-arrest specific micro-tubule binding Prefoldin PF02996.17 gi|530548380|ref|YP_008428918.1| - 0.0029 17.5 7.1 0.023 14.6 2.9 2.0 1 1 1 2 2 2 1 Prefoldin subunit NPV_P10 PF05531.12 gi|530548380|ref|YP_008428918.1| - 0.0073 16.7 0.7 0.0085 16.5 0.7 1.2 1 0 0 1 1 1 1 Nucleopolyhedrovirus P10 protein Spore_III_AB PF09548.10 gi|530548380|ref|YP_008428918.1| - 0.0091 16.1 3.0 0.01 16.0 3.0 1.1 1 0 0 1 1 1 1 Stage III sporulation protein AB (spore_III_AB) Baculo_PEP_C PF04513.12 gi|530548380|ref|YP_008428918.1| - 0.019 15.0 1.5 0.022 14.8 1.5 1.1 1 0 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus KxDL PF10241.9 gi|530548380|ref|YP_008428918.1| - 0.019 15.2 3.1 0.025 14.8 3.1 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein FlaC_arch PF05377.11 gi|530548380|ref|YP_008428918.1| - 0.027 14.9 6.7 0.037 14.4 3.1 2.0 1 1 1 2 2 2 0 Flagella accessory protein C (FlaC) Prefoldin_3 PF13758.6 gi|530548380|ref|YP_008428918.1| - 0.033 14.3 2.6 0.37 10.9 0.4 2.1 1 1 1 2 2 2 0 Prefoldin subunit Prefoldin_2 PF01920.20 gi|530548380|ref|YP_008428918.1| - 0.042 13.8 10.2 0.75 9.8 4.3 2.0 1 1 1 2 2 2 0 Prefoldin subunit Fzo_mitofusin PF04799.13 gi|530548380|ref|YP_008428918.1| - 0.047 13.2 1.9 0.047 13.2 1.9 1.2 1 0 0 1 1 1 0 fzo-like conserved region DUF1664 PF07889.12 gi|530548380|ref|YP_008428918.1| - 0.051 13.6 2.1 0.063 13.3 2.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) XhlA PF10779.9 gi|530548380|ref|YP_008428918.1| - 0.071 13.3 8.0 0.46 10.7 8.0 1.9 1 1 0 1 1 1 0 Haemolysin XhlA Cauli_AT PF03233.13 gi|530548380|ref|YP_008428918.1| - 0.073 13.0 1.3 0.087 12.8 1.3 1.1 1 0 0 1 1 1 0 Aphid transmission protein bZIP_2 PF07716.15 gi|530548380|ref|YP_008428918.1| - 0.088 12.9 0.9 0.088 12.9 0.9 2.1 2 0 0 2 2 2 0 Basic region leucine zipper CCDC-167 PF15188.6 gi|530548380|ref|YP_008428918.1| - 0.11 12.8 7.8 0.15 12.5 7.8 1.1 1 0 0 1 1 1 0 Coiled-coil domain-containing protein 167 BLI1 PF17324.2 gi|530548380|ref|YP_008428918.1| - 0.12 13.1 6.8 0.15 12.8 6.8 1.2 1 0 0 1 1 1 0 BLOC-1 interactor 1 DUF4988 PF16378.5 gi|530548380|ref|YP_008428918.1| - 0.17 11.5 3.3 0.64 9.7 1.7 1.8 1 1 1 2 2 2 0 Domain of unknown function Atg14 PF10186.9 gi|530548380|ref|YP_008428918.1| - 0.18 10.9 4.1 0.19 10.8 4.1 1.0 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 ABC_tran_CTD PF16326.5 gi|530548380|ref|YP_008428918.1| - 0.22 11.8 10.6 0.68 10.2 8.7 2.2 1 1 1 2 2 2 0 ABC transporter C-terminal domain DASH_Dam1 PF08653.10 gi|530548380|ref|YP_008428918.1| - 0.26 11.1 1.7 0.87 9.4 1.7 1.8 1 1 0 1 1 1 0 DASH complex subunit Dam1 YabA PF06156.13 gi|530548380|ref|YP_008428918.1| - 1.1 9.9 4.9 3 8.5 4.9 1.7 1 1 0 1 1 1 0 Initiation control protein YabA Osmo_CC PF08946.10 gi|530548380|ref|YP_008428918.1| - 1.7 8.9 13.7 2.5 8.4 8.1 2.3 1 1 1 2 2 2 0 Osmosensory transporter coiled coil HR1 PF02185.16 gi|530548380|ref|YP_008428918.1| - 2.4 8.4 11.3 3.1 8.0 1.2 2.2 1 1 1 2 2 2 0 Hr1 repeat GTP-bdg_M PF16360.5 gi|530548380|ref|YP_008428918.1| - 5.7 7.6 9.6 8 7.1 0.4 2.6 1 1 2 3 3 3 0 GTP-binding GTPase Middle Region AAA_23 PF13476.6 gi|530548380|ref|YP_008428918.1| - 7.6 7.0 11.4 8.4 6.8 11.4 1.2 1 0 0 1 1 1 0 AAA domain CCDC106 PF15794.5 gi|530548380|ref|YP_008428918.1| - 8.5 6.0 9.3 16 5.2 0.5 2.0 1 1 1 2 2 2 0 Coiled-coil domain-containing protein 106 SlyX PF04102.12 gi|530548380|ref|YP_008428918.1| - 9.4 6.9 9.7 2.1e+02 2.6 9.7 2.3 1 1 0 1 1 1 0 SlyX MarC PF01914.17 gi|530548381|ref|YP_008428919.1| - 4.3e-30 104.6 21.7 4.9e-30 104.4 21.7 1.0 1 0 0 1 1 1 1 MarC family integral membrane protein Proton_antipo_N PF00662.20 gi|530548381|ref|YP_008428919.1| - 0.28 11.3 2.1 0.64 10.1 2.1 1.7 1 0 0 1 1 1 0 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus OST3_OST6 PF04756.13 gi|530548381|ref|YP_008428919.1| - 4.9 6.4 6.5 9.6 5.5 6.5 1.4 1 0 0 1 1 1 0 OST3 / OST6 family, transporter family DUF1461 PF07314.11 gi|530548381|ref|YP_008428919.1| - 9.5 6.1 10.5 0.79 9.6 0.6 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1461) tRNA-synt_His PF13393.6 gi|530548382|ref|YP_008428920.1| - 1.4e-64 218.3 0.0 1.8e-64 217.9 0.0 1.1 1 0 0 1 1 1 1 Histidyl-tRNA synthetase HGTP_anticodon PF03129.20 gi|530548382|ref|YP_008428920.1| - 1.7e-17 63.3 2.7 1.7e-17 63.3 2.7 1.8 2 0 0 2 2 2 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|530548382|ref|YP_008428920.1| - 1.2e-14 54.7 0.0 1.4e-13 51.2 0.0 2.3 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) tRNA-synt_2 PF00152.20 gi|530548382|ref|YP_008428920.1| - 1.3e-06 27.8 0.6 0.00042 19.5 0.2 2.7 2 1 0 2 2 2 2 tRNA synthetases class II (D, K and N) tRNA-synt_2d PF01409.20 gi|530548382|ref|YP_008428920.1| - 0.0041 16.7 0.0 0.016 14.7 0.0 2.0 2 1 0 2 2 2 1 tRNA synthetases class II core domain (F) Pkip-1 PF06878.11 gi|530548382|ref|YP_008428920.1| - 0.049 13.7 0.1 0.09 12.9 0.1 1.4 1 0 0 1 1 1 0 Pkip-1 protein NUFIP1 PF10453.9 gi|530548383|ref|YP_008428921.1| - 0.016 15.1 3.7 0.026 14.4 3.7 1.3 1 0 0 1 1 1 0 Nuclear fragile X mental retardation-interacting protein 1 (NUFIP1) DUF2950 PF11453.8 gi|530548383|ref|YP_008428921.1| - 0.13 11.4 0.3 0.16 11.2 0.3 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2950) PadR PF03551.14 gi|530548384|ref|YP_008428922.1| - 5.7e-22 77.5 1.6 8.1e-22 77.0 1.6 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family DUF505 PF04458.12 gi|530548384|ref|YP_008428922.1| - 0.00013 20.5 0.9 0.00013 20.5 0.9 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF505) DUF4364 PF14277.6 gi|530548384|ref|YP_008428922.1| - 0.0074 16.0 0.1 0.019 14.8 0.1 1.7 1 1 1 2 2 2 1 Domain of unknown function (DUF4364) HTH_45 PF14947.6 gi|530548384|ref|YP_008428922.1| - 0.016 15.1 0.5 0.034 14.1 0.5 1.7 1 1 0 1 1 1 0 Winged helix-turn-helix HTH_34 PF13601.6 gi|530548384|ref|YP_008428922.1| - 0.017 15.3 0.6 0.034 14.3 0.6 1.6 1 1 0 1 1 1 0 Winged helix DNA-binding domain DDE_Tnp_1_assoc PF13808.6 gi|530548384|ref|YP_008428922.1| - 0.053 13.6 0.0 13 5.9 0.0 2.2 1 1 1 2 2 2 0 DDE_Tnp_1-associated HxlR PF01638.17 gi|530548384|ref|YP_008428922.1| - 0.069 13.0 0.4 0.093 12.6 0.4 1.3 1 1 0 1 1 1 0 HxlR-like helix-turn-helix DUF3887 PF13026.6 gi|530548385|ref|YP_008428923.1| - 2.1e-10 41.3 0.4 3.4e-10 40.6 0.4 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF3887) YhfC PF10086.9 gi|530548385|ref|YP_008428923.1| - 2e-07 30.6 10.9 0.00021 20.7 0.1 2.2 1 1 1 2 2 2 2 YhfC intramembrane metalloprotease Diphthamide_syn PF01866.17 gi|530548386|ref|YP_008428924.1| - 3.8e-79 266.3 0.0 4.4e-79 266.1 0.0 1.0 1 0 0 1 1 1 1 Putative diphthamide synthesis protein DUF1847 PF08901.11 gi|530548386|ref|YP_008428924.1| - 0.0018 18.0 0.2 0.46 10.1 0.0 3.0 3 0 0 3 3 3 1 Protein of unknown function (DUF1847) DUF2007 PF09413.10 gi|530548386|ref|YP_008428924.1| - 0.0084 16.2 0.1 1.1 9.4 0.0 2.9 3 0 0 3 3 3 1 Putative prokaryotic signal transducing protein Fe-ADH PF00465.19 gi|530548386|ref|YP_008428924.1| - 0.07 11.9 0.1 8.9 5.0 0.0 2.6 3 0 0 3 3 3 0 Iron-containing alcohol dehydrogenase Amdase PF17645.1 gi|530548386|ref|YP_008428924.1| - 0.21 11.2 0.0 11 5.6 0.0 2.2 2 0 0 2 2 2 0 Arylmalonate decarboxylase MTS PF05175.14 gi|530548388|ref|YP_008428926.1| - 6.2e-14 51.9 0.0 9.9e-14 51.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.13 gi|530548388|ref|YP_008428926.1| - 1.6e-13 50.7 0.7 2.2e-13 50.3 0.7 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Cons_hypoth95 PF03602.15 gi|530548388|ref|YP_008428926.1| - 6e-10 39.1 0.0 7.4e-10 38.8 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_31 PF13847.6 gi|530548388|ref|YP_008428926.1| - 2.5e-09 37.1 0.1 3.3e-09 36.7 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|530548388|ref|YP_008428926.1| - 2.4e-07 31.4 0.0 5.6e-07 30.2 0.0 1.6 1 1 1 2 2 2 1 Methyltransferase domain UPF0020 PF01170.18 gi|530548388|ref|YP_008428926.1| - 1.3e-06 28.2 0.8 5e-06 26.3 0.8 1.8 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Met_10 PF02475.16 gi|530548388|ref|YP_008428926.1| - 7.3e-06 25.9 2.4 2.1e-05 24.4 0.8 1.9 1 1 1 2 2 2 1 Met-10+ like-protein Methyltransf_15 PF09445.10 gi|530548388|ref|YP_008428926.1| - 0.00019 21.0 0.0 0.0003 20.4 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase GidB PF02527.15 gi|530548388|ref|YP_008428926.1| - 0.00052 19.4 0.0 0.00074 18.9 0.0 1.2 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G DNA_methylase PF00145.17 gi|530548388|ref|YP_008428926.1| - 0.00069 19.1 0.0 0.0011 18.4 0.0 1.2 1 0 0 1 1 1 1 C-5 cytosine-specific DNA methylase N6_Mtase PF02384.16 gi|530548388|ref|YP_008428926.1| - 0.0034 16.7 0.0 0.0045 16.3 0.0 1.3 1 0 0 1 1 1 1 N-6 DNA Methylase tRNA_U5-meth_tr PF05958.11 gi|530548388|ref|YP_008428926.1| - 0.004 16.2 0.1 0.0071 15.4 0.1 1.3 1 0 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase Methyltransf_32 PF13679.6 gi|530548388|ref|YP_008428926.1| - 0.0058 16.6 0.0 0.007 16.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.7 gi|530548388|ref|YP_008428926.1| - 0.0074 16.2 0.3 0.017 15.1 0.1 1.6 2 0 0 2 2 2 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|530548388|ref|YP_008428926.1| - 0.016 14.5 0.2 0.023 14.0 0.2 1.3 1 1 0 1 1 1 0 ubiE/COQ5 methyltransferase family N6-adenineMlase PF10237.9 gi|530548388|ref|YP_008428926.1| - 0.022 14.6 0.2 0.044 13.6 0.2 1.5 1 1 1 2 2 2 0 Probable N6-adenine methyltransferase Methyltransf_12 PF08242.12 gi|530548388|ref|YP_008428926.1| - 0.023 15.4 0.0 0.042 14.6 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Methyltr_RsmB-F PF01189.17 gi|530548388|ref|YP_008428926.1| - 0.036 13.7 0.0 0.049 13.3 0.0 1.3 1 0 0 1 1 1 0 16S rRNA methyltransferase RsmB/F RrnaAD PF00398.20 gi|530548388|ref|YP_008428926.1| - 0.076 12.1 0.0 0.12 11.4 0.0 1.3 1 1 0 1 1 1 0 Ribosomal RNA adenine dimethylase Methyltransf_4 PF02390.17 gi|530548388|ref|YP_008428926.1| - 0.077 12.5 0.2 0.12 11.8 0.2 1.3 1 0 0 1 1 1 0 Putative methyltransferase PCMT PF01135.19 gi|530548388|ref|YP_008428926.1| - 0.14 11.9 0.1 0.18 11.5 0.1 1.1 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltr_RsmB-F PF01189.17 gi|530548389|ref|YP_008428927.1| - 1.2e-65 221.0 0.0 1.7e-65 220.4 0.0 1.2 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F Methyltransf_31 PF13847.6 gi|530548389|ref|YP_008428927.1| - 6.7e-11 42.2 0.0 1.1e-10 41.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltr_RsmF_N PF17125.5 gi|530548389|ref|YP_008428927.1| - 2.1e-08 34.5 0.0 5.7e-08 33.2 0.0 1.8 1 0 0 1 1 1 1 N-terminal domain of 16S rRNA methyltransferase RsmF FtsJ PF01728.19 gi|530548389|ref|YP_008428927.1| - 1.1e-07 32.1 0.0 2e-07 31.3 0.0 1.4 1 0 0 1 1 1 1 FtsJ-like methyltransferase Ubie_methyltran PF01209.18 gi|530548389|ref|YP_008428927.1| - 7e-05 22.3 0.0 0.001 18.4 0.0 2.1 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_25 PF13649.6 gi|530548389|ref|YP_008428927.1| - 0.0003 21.5 0.0 0.0044 17.7 0.0 2.3 2 0 0 2 2 2 1 Methyltransferase domain Fibrillarin PF01269.17 gi|530548389|ref|YP_008428927.1| - 0.0012 18.1 0.0 0.0019 17.3 0.0 1.3 1 0 0 1 1 1 1 Fibrillarin NusB PF01029.18 gi|530548389|ref|YP_008428927.1| - 0.0013 18.9 0.0 0.0036 17.5 0.0 1.7 1 0 0 1 1 1 1 NusB family MTS PF05175.14 gi|530548389|ref|YP_008428927.1| - 0.0033 17.0 0.0 0.13 11.8 0.0 2.2 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_5 PF01795.19 gi|530548389|ref|YP_008428927.1| - 0.0084 15.6 0.0 0.25 10.8 0.0 2.2 2 0 0 2 2 2 1 MraW methylase family PCMT PF01135.19 gi|530548389|ref|YP_008428927.1| - 0.032 14.0 0.0 0.069 12.9 0.0 1.5 2 0 0 2 2 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_11 PF08241.12 gi|530548389|ref|YP_008428927.1| - 0.036 14.7 0.0 2.8 8.6 0.0 2.4 2 0 0 2 2 2 0 Methyltransferase domain DUF3801 PF12687.7 gi|530548389|ref|YP_008428927.1| - 0.1 12.6 0.0 0.23 11.5 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3801) GCD14 PF08704.10 gi|530548389|ref|YP_008428927.1| - 0.13 12.0 0.0 0.2 11.3 0.0 1.2 1 0 0 1 1 1 0 tRNA methyltransferase complex GCD14 subunit Exonuc_VII_L PF02601.15 gi|530548389|ref|YP_008428927.1| - 0.16 11.5 0.0 0.23 11.0 0.0 1.3 1 0 0 1 1 1 0 Exonuclease VII, large subunit Methyltransf_24 PF13578.6 gi|530548389|ref|YP_008428927.1| - 0.19 12.8 0.0 1.1 10.3 0.0 2.1 1 1 0 1 1 1 0 Methyltransferase domain PRA-PH PF01503.17 gi|530548389|ref|YP_008428927.1| - 0.25 11.8 2.1 2.8 8.4 0.0 3.0 4 0 0 4 4 2 0 Phosphoribosyl-ATP pyrophosphohydrolase MS_channel PF00924.18 gi|530548390|ref|YP_008428928.1| - 6.9e-61 205.4 0.5 1.4e-60 204.3 0.5 1.5 1 0 0 1 1 1 1 Mechanosensitive ion channel TM_helix PF05552.12 gi|530548390|ref|YP_008428928.1| - 0.0066 16.4 7.9 0.04 13.9 0.8 3.3 4 0 0 4 4 4 2 Conserved TM helix DUF432 PF04254.13 gi|530548391|ref|YP_008428929.1| - 1.1e-27 96.6 0.0 3.6e-27 95.0 0.0 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF432) DUF5616 PF18481.1 gi|530548392|ref|YP_008428930.1| - 9.4e-42 142.7 0.0 1.2e-41 142.3 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF5616) DUF434 PF04256.12 gi|530548392|ref|YP_008428930.1| - 5.7e-25 86.8 3.7 1e-24 86.0 3.7 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF434) HD PF01966.22 gi|530548393|ref|YP_008428931.1| - 4.1e-06 27.0 0.0 7.1e-06 26.2 0.0 1.4 1 0 0 1 1 1 1 HD domain DUF1935 PF09149.10 gi|530548393|ref|YP_008428931.1| - 0.049 14.0 0.1 0.094 13.1 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1935) Molybdopterin PF00384.22 gi|530548394|ref|YP_008428932.1| - 3.5e-89 299.7 0.0 4.2e-89 299.5 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|530548394|ref|YP_008428932.1| - 4.3e-17 62.1 0.0 7.1e-17 61.4 0.0 1.3 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 gi|530548394|ref|YP_008428932.1| - 1.2e-06 28.4 0.2 2.2e-06 27.5 0.2 1.5 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain GATase_7 PF13537.6 gi|530548395|ref|YP_008428933.1| - 4.1e-18 65.5 0.0 6.4e-18 64.9 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_6 PF13522.6 gi|530548395|ref|YP_008428933.1| - 1.2e-15 57.9 0.0 2.5e-15 56.8 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain Pribosyltran PF00156.27 gi|530548395|ref|YP_008428933.1| - 9.5e-10 38.2 0.1 1.9e-09 37.3 0.1 1.5 1 0 0 1 1 1 1 Phosphoribosyl transferase domain GATase_4 PF13230.6 gi|530548395|ref|YP_008428933.1| - 3.3e-07 29.5 0.0 4.9e-07 28.9 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferases class-II PRTase_2 PF15609.6 gi|530548395|ref|YP_008428933.1| - 0.096 12.2 0.1 0.23 10.9 0.1 1.6 2 0 0 2 2 2 0 Phosphoribosyl transferase SAICAR_synt PF01259.18 gi|530547455|ref|YP_008428934.1| - 2.1e-69 234.0 0.6 2.3e-69 233.8 0.6 1.0 1 0 0 1 1 1 1 SAICAR synthetase Myb_CC_LHEQLE PF14379.6 gi|564287480|ref|YP_008428935.3| - 0.069 12.9 3.4 0.073 12.8 0.3 2.4 1 1 1 2 2 2 0 MYB-CC type transfactor, LHEQLE motif Apolipoprotein PF01442.18 gi|564287480|ref|YP_008428935.3| - 0.23 11.3 5.6 0.069 13.0 2.3 1.8 2 0 0 2 2 2 0 Apolipoprotein A1/A4/E domain DUF4455 PF14643.6 gi|564287480|ref|YP_008428935.3| - 1 7.9 9.2 0.03 13.0 1.9 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4455) DNA_ligase_A_N PF04675.14 gi|564287480|ref|YP_008428935.3| - 1.8 8.9 5.0 5.2 7.4 0.3 2.8 3 0 0 3 3 3 0 DNA ligase N terminus Xpo1 PF08389.12 gi|564287480|ref|YP_008428935.3| - 4.1 7.4 7.1 2.7 8.1 0.8 3.2 2 1 1 3 3 3 0 Exportin 1-like protein AIRS_C PF02769.22 gi|530547456|ref|YP_008428936.1| - 1e-26 94.0 0.0 1.7e-26 93.2 0.0 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|530547456|ref|YP_008428936.1| - 4.2e-19 69.0 1.7 7e-19 68.3 1.7 1.3 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain DUF4478 PF14793.6 gi|530547456|ref|YP_008428936.1| - 0.13 12.2 0.0 0.59 10.0 0.0 2.0 2 0 0 2 2 2 0 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases ATP-grasp PF02222.22 gi|530548397|ref|YP_008428937.1| - 5.4e-55 185.6 0.0 8.7e-55 184.9 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.17 gi|530548397|ref|YP_008428937.1| - 3.3e-08 33.3 0.0 5.4e-08 32.6 0.0 1.2 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain Dala_Dala_lig_C PF07478.13 gi|530548397|ref|YP_008428937.1| - 8.4e-08 32.0 0.0 1.3e-07 31.3 0.0 1.3 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus GARS_A PF01071.19 gi|530548397|ref|YP_008428937.1| - 8.3e-05 22.4 0.1 0.0016 18.2 0.0 2.3 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain 2-Hacid_dh_C PF02826.19 gi|530548397|ref|YP_008428937.1| - 0.0018 17.7 0.0 0.0037 16.6 0.0 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Epimerase PF01370.21 gi|530548397|ref|YP_008428937.1| - 0.0038 16.7 0.0 0.006 16.1 0.0 1.4 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family DUF3460 PF11943.8 gi|530548397|ref|YP_008428937.1| - 0.033 14.5 0.9 1.1 9.6 0.0 2.6 3 0 0 3 3 3 0 Protein of unknown function (DUF3460) ATP-grasp_3 PF02655.14 gi|530548397|ref|YP_008428937.1| - 0.16 12.0 0.0 0.29 11.2 0.0 1.6 1 1 0 1 1 1 0 ATP-grasp domain AIRC PF00731.20 gi|530548398|ref|YP_008428938.1| - 8.9e-57 190.8 0.5 9.8e-57 190.7 0.5 1.0 1 0 0 1 1 1 1 AIR carboxylase Fe-ADH_2 PF13685.6 gi|530548398|ref|YP_008428938.1| - 0.0014 18.4 0.2 0.0018 18.0 0.2 1.1 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase PrpR_N PF06506.11 gi|530548398|ref|YP_008428938.1| - 0.0032 17.0 0.0 0.0044 16.6 0.0 1.3 1 0 0 1 1 1 1 Propionate catabolism activator GARS_A PF01071.19 gi|530548399|ref|YP_008428939.1| - 4e-60 202.9 0.0 7.5e-60 202.0 0.0 1.5 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain GARS_N PF02844.15 gi|530548399|ref|YP_008428939.1| - 7e-26 90.9 0.3 2.4e-24 85.9 0.1 2.3 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, N domain GARS_C PF02843.16 gi|530548399|ref|YP_008428939.1| - 3.3e-15 56.1 0.7 7.9e-14 51.7 0.1 3.0 3 0 0 3 3 3 1 Phosphoribosylglycinamide synthetase, C domain ATP-grasp_3 PF02655.14 gi|530548399|ref|YP_008428939.1| - 5.9e-05 23.2 0.0 0.00021 21.4 0.0 1.9 1 1 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.17 gi|530548399|ref|YP_008428939.1| - 0.00014 21.4 0.0 0.00054 19.5 0.0 1.9 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, ATP binding domain Dala_Dala_lig_C PF07478.13 gi|530548399|ref|YP_008428939.1| - 0.00019 21.0 0.0 0.00037 20.1 0.0 1.4 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus ATP-grasp PF02222.22 gi|530548399|ref|YP_008428939.1| - 0.00072 19.2 0.1 0.0014 18.2 0.1 1.5 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_2 PF08442.10 gi|530548399|ref|YP_008428939.1| - 0.0025 17.4 0.1 0.0055 16.3 0.1 1.5 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_4 PF13535.6 gi|530548399|ref|YP_008428939.1| - 0.0049 16.5 0.2 0.047 13.3 0.5 2.4 2 1 0 2 2 2 1 ATP-grasp domain ATPgrasp_ST PF14397.6 gi|530548399|ref|YP_008428939.1| - 0.043 13.1 0.0 0.11 11.8 0.0 1.6 2 0 0 2 2 2 0 Sugar-transfer associated ATP-grasp ATP-grasp_5 PF13549.6 gi|530548399|ref|YP_008428939.1| - 0.05 13.1 0.1 0.36 10.2 0.0 2.2 2 0 0 2 2 2 0 ATP-grasp domain DUF1297 PF06973.12 gi|530548400|ref|YP_008428940.1| - 1.5e-80 269.2 0.0 2.1e-80 268.7 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1297) DUF1246 PF06849.12 gi|530548400|ref|YP_008428940.1| - 1.4e-43 147.7 0.0 2.3e-43 147.0 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1246) Radical_SAM PF04055.21 gi|530548403|ref|YP_008428943.1| - 8e-16 58.9 0.1 2.3e-15 57.4 0.0 1.8 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|530548403|ref|YP_008428943.1| - 5.8e-08 33.1 0.2 1.6e-07 31.7 0.0 1.8 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|530548403|ref|YP_008428943.1| - 0.002 18.2 0.0 0.0057 16.8 0.0 1.7 1 0 0 1 1 1 1 4Fe-4S single cluster domain ABC_tran PF00005.27 gi|530548404|ref|YP_008428944.1| - 6.5e-32 110.9 0.0 1.4e-31 109.8 0.0 1.6 1 0 0 1 1 1 1 ABC transporter ABC_membrane PF00664.23 gi|530548404|ref|YP_008428944.1| - 1.5e-24 87.1 16.8 1.9e-24 86.8 16.8 1.1 1 0 0 1 1 1 1 ABC transporter transmembrane region SMC_N PF02463.19 gi|530548404|ref|YP_008428944.1| - 1.3e-07 31.3 4.3 1.4e-06 27.9 0.5 2.3 1 1 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|530548404|ref|YP_008428944.1| - 4.9e-05 23.3 0.5 0.0044 16.9 0.0 2.4 1 1 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|530548404|ref|YP_008428944.1| - 5.4e-05 23.5 1.3 0.00089 19.5 1.3 2.3 1 1 0 1 1 1 1 AAA domain AAA_14 PF13173.6 gi|530548404|ref|YP_008428944.1| - 0.00011 22.3 0.2 0.0015 18.6 0.0 2.4 1 1 1 2 2 2 1 AAA domain IstB_IS21 PF01695.17 gi|530548404|ref|YP_008428944.1| - 0.0031 17.3 0.6 1.6 8.4 0.0 2.3 2 0 0 2 2 2 2 IstB-like ATP binding protein cobW PF02492.19 gi|530548404|ref|YP_008428944.1| - 0.0057 16.3 0.1 0.016 14.8 0.1 1.7 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain ATPase_2 PF01637.18 gi|530548404|ref|YP_008428944.1| - 0.0088 16.0 0.9 0.037 13.9 0.9 2.0 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_29 PF13555.6 gi|530548404|ref|YP_008428944.1| - 0.025 14.3 0.1 0.062 13.1 0.1 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_18 PF13238.6 gi|530548404|ref|YP_008428944.1| - 0.025 15.1 1.1 0.13 12.8 1.1 2.2 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|530548404|ref|YP_008428944.1| - 0.046 14.1 0.1 0.11 12.8 0.1 1.6 1 1 0 1 1 1 0 AAA ATPase domain ResIII PF04851.15 gi|530548404|ref|YP_008428944.1| - 0.096 12.7 0.2 0.65 10.0 0.0 2.2 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit PhoH PF02562.16 gi|530548404|ref|YP_008428944.1| - 0.097 12.1 0.1 0.35 10.3 0.0 1.9 2 0 0 2 2 2 0 PhoH-like protein AAA PF00004.29 gi|530548404|ref|YP_008428944.1| - 0.13 12.7 1.8 1.6 9.1 1.8 2.4 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_23 PF13476.6 gi|530548404|ref|YP_008428944.1| - 0.13 12.7 0.5 0.13 12.7 0.5 2.1 3 0 0 3 3 3 0 AAA domain AAA_24 PF13479.6 gi|530548404|ref|YP_008428944.1| - 0.15 11.8 0.1 0.25 11.0 0.1 1.5 1 1 0 1 1 1 0 AAA domain TrwB_AAD_bind PF10412.9 gi|530548404|ref|YP_008428944.1| - 0.32 9.9 1.3 4.7 6.0 0.1 2.2 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain PurS PF02700.14 gi|530548405|ref|YP_008428945.1| - 2.6e-25 88.4 0.1 2.9e-25 88.2 0.1 1.0 1 0 0 1 1 1 1 Phosphoribosylformylglycinamidine (FGAM) synthase GATase_5 PF13507.6 gi|530548406|ref|YP_008428946.1| - 1.6e-25 89.7 0.0 1.8e-25 89.5 0.0 1.1 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain GATase_3 PF07685.14 gi|530548406|ref|YP_008428946.1| - 8.6e-10 38.5 0.0 9.9e-10 38.3 0.0 1.1 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain DJ-1_PfpI PF01965.24 gi|530548406|ref|YP_008428946.1| - 9.7e-09 35.2 0.0 1.2e-08 34.9 0.0 1.2 1 0 0 1 1 1 1 DJ-1/PfpI family GATase PF00117.28 gi|530548406|ref|YP_008428946.1| - 1.1e-08 35.1 0.0 1.4e-08 34.8 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferase class-I SNO PF01174.19 gi|530548406|ref|YP_008428946.1| - 2.9e-07 30.5 0.0 3.7e-07 30.2 0.0 1.0 1 0 0 1 1 1 1 SNO glutamine amidotransferase family Peptidase_C26 PF07722.13 gi|530548406|ref|YP_008428946.1| - 7.2e-05 22.6 0.1 0.00028 20.7 0.1 1.8 1 1 0 1 1 1 1 Peptidase C26 DUF4131 PF13567.6 gi|530548406|ref|YP_008428946.1| - 0.00027 20.6 0.0 0.00034 20.3 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4131) GATase_5 PF13507.6 gi|530548407|ref|YP_008428947.1| - 1.8e-17 63.3 0.0 2e-17 63.1 0.0 1.1 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain Gly_radical PF01228.21 gi|530548408|ref|YP_008428948.1| - 0.15 12.6 0.0 1.3 9.6 0.0 2.5 3 0 0 3 3 3 0 Glycine radical AIRS_C PF02769.22 gi|530547457|ref|YP_008428950.1| - 1.5e-57 194.1 4.0 1.9e-34 119.0 0.1 2.7 3 0 0 3 3 3 2 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|530547457|ref|YP_008428950.1| - 2.3e-48 162.8 0.2 7.7e-25 87.4 0.1 2.3 2 0 0 2 2 2 2 AIR synthase related protein, N-terminal domain FGAR-AT_linker PF18072.1 gi|530547457|ref|YP_008428950.1| - 2.3e-07 31.2 1.7 5.5e-07 30.0 0.3 2.3 2 0 0 2 2 2 1 Formylglycinamide ribonucleotide amidotransferase linker domain DUF3801 PF12687.7 gi|530547457|ref|YP_008428950.1| - 0.25 11.4 0.0 33 4.5 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3801) FAD_binding_2 PF00890.24 gi|530548410|ref|YP_008428951.1| - 3.5e-64 217.4 0.0 4.3e-64 217.1 0.0 1.0 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.14 gi|530548410|ref|YP_008428951.1| - 2.8e-12 46.5 0.0 2.1e-06 27.2 0.0 2.6 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Succ_DH_flav_C PF02910.20 gi|530548410|ref|YP_008428951.1| - 1.5e-10 41.1 0.2 6.6e-06 26.1 0.1 2.3 1 1 1 2 2 2 2 Fumarate reductase flavoprotein C-term DAO PF01266.24 gi|530548410|ref|YP_008428951.1| - 3.7e-08 33.3 1.6 0.0032 17.1 1.2 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase GIDA PF01134.22 gi|530548410|ref|YP_008428951.1| - 1.3e-05 24.5 0.9 0.0031 16.7 0.7 2.2 2 0 0 2 2 2 2 Glucose inhibited division protein A HI0933_like PF03486.14 gi|530548410|ref|YP_008428951.1| - 4.8e-05 22.2 0.5 0.1 11.2 0.9 2.2 2 0 0 2 2 2 2 HI0933-like protein NAD_binding_8 PF13450.6 gi|530548410|ref|YP_008428951.1| - 0.00067 19.8 0.9 0.0021 18.2 0.9 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain UDPG_MGDP_dh_N PF03721.14 gi|530548410|ref|YP_008428951.1| - 0.023 14.3 0.3 0.044 13.4 0.3 1.4 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain FAD_binding_3 PF01494.19 gi|530548410|ref|YP_008428951.1| - 0.037 13.3 0.5 0.055 12.7 0.5 1.2 1 0 0 1 1 1 0 FAD binding domain ApbA PF02558.16 gi|530548410|ref|YP_008428951.1| - 0.12 12.1 0.4 0.24 11.0 0.4 1.5 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA 3HCDH_N PF02737.18 gi|530548410|ref|YP_008428951.1| - 0.17 11.8 0.4 0.3 11.0 0.4 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Thi4 PF01946.17 gi|530548410|ref|YP_008428951.1| - 0.19 10.9 1.2 0.43 9.8 0.4 2.0 2 0 0 2 2 2 0 Thi4 family Pyr_redox PF00070.27 gi|530548410|ref|YP_008428951.1| - 0.43 11.2 2.0 1.2 9.7 0.9 2.3 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase NadA PF02445.16 gi|530548411|ref|YP_008428952.1| - 1.3e-111 372.6 0.8 1.4e-111 372.4 0.8 1.0 1 0 0 1 1 1 1 Quinolinate synthetase A protein Formin_GBD_N PF18382.1 gi|530548411|ref|YP_008428952.1| - 0.1 13.1 0.0 0.21 12.1 0.0 1.5 1 0 0 1 1 1 0 Formin N-terminal GTPase-binding domain QRPTase_C PF01729.19 gi|530548412|ref|YP_008428953.1| - 4.4e-51 173.0 1.2 6e-51 172.6 1.2 1.2 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.16 gi|530548412|ref|YP_008428953.1| - 3.7e-30 103.8 0.1 6.8e-30 103.0 0.1 1.5 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain B12-binding PF02310.19 gi|530548412|ref|YP_008428953.1| - 0.00033 20.7 2.0 0.0086 16.1 0.2 2.6 2 1 1 3 3 3 1 B12 binding domain CCDC73 PF15818.5 gi|530548412|ref|YP_008428953.1| - 0.0022 16.0 2.1 0.0029 15.6 2.1 1.1 1 0 0 1 1 1 1 Coiled-coil domain-containing protein 73 family Ribul_P_3_epim PF00834.19 gi|530548412|ref|YP_008428953.1| - 0.0031 16.9 0.2 0.0096 15.3 0.1 1.8 1 1 1 2 2 2 1 Ribulose-phosphate 3 epimerase family Radical_SAM PF04055.21 gi|530548412|ref|YP_008428953.1| - 0.0085 16.5 0.1 0.059 13.7 0.1 2.2 1 1 0 1 1 1 1 Radical SAM superfamily ALAD PF00490.21 gi|530548412|ref|YP_008428953.1| - 0.012 14.8 0.0 0.019 14.1 0.0 1.2 1 0 0 1 1 1 0 Delta-aminolevulinic acid dehydratase Biotin_lipoyl_2 PF13533.6 gi|530548412|ref|YP_008428953.1| - 0.018 14.9 0.1 0.018 14.9 0.1 2.3 3 0 0 3 3 3 0 Biotin-lipoyl like TMP-TENI PF02581.17 gi|530548412|ref|YP_008428953.1| - 0.025 13.9 0.1 0.06 12.7 0.1 1.6 1 1 0 1 1 1 0 Thiamine monophosphate synthase DUF3783 PF12646.7 gi|530548412|ref|YP_008428953.1| - 0.06 13.3 0.1 0.14 12.1 0.1 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF3783) SBD_N PF07005.11 gi|530548412|ref|YP_008428953.1| - 0.12 12.1 0.2 0.21 11.3 0.2 1.4 1 0 0 1 1 1 0 Sugar-binding N-terminal domain RibD_C PF01872.17 gi|564287481|ref|YP_008428954.3| - 5.8e-29 101.4 0.0 8.1e-29 100.9 0.0 1.2 1 0 0 1 1 1 1 RibD C-terminal domain dCMP_cyt_deam_1 PF00383.23 gi|564287481|ref|YP_008428954.3| - 4.4e-21 74.7 0.0 5.9e-20 71.0 0.0 2.4 3 0 0 3 3 3 1 Cytidine and deoxycytidylate deaminase zinc-binding region MafB19-deam PF14437.6 gi|564287481|ref|YP_008428954.3| - 1.8e-16 60.1 0.0 3.2e-16 59.3 0.0 1.4 1 0 0 1 1 1 1 MafB19-like deaminase Inv-AAD PF18785.1 gi|564287481|ref|YP_008428954.3| - 7.4e-09 35.6 0.0 2.4e-08 33.9 0.0 1.9 1 1 0 1 1 1 1 Invertebrate-AID/APOBEC-deaminase APOBEC_N PF08210.11 gi|564287481|ref|YP_008428954.3| - 0.022 14.7 0.1 0.17 11.7 0.0 2.3 2 1 0 2 2 2 0 APOBEC-like N-terminal domain DHFR_1 PF00186.19 gi|564287481|ref|YP_008428954.3| - 0.062 13.0 0.0 0.1 12.3 0.0 1.3 1 0 0 1 1 1 0 Dihydrofolate reductase APOBEC3 PF18771.1 gi|564287481|ref|YP_008428954.3| - 0.089 12.9 0.0 0.35 11.0 0.0 1.9 2 0 0 2 2 2 0 APOBEC3 Lum_binding PF00677.17 gi|530548414|ref|YP_008428955.1| - 1.2e-36 124.6 0.0 4.4e-22 77.9 0.0 2.1 2 0 0 2 2 2 2 Lumazine binding domain GTP_cyclohydro2 PF00925.20 gi|530548415|ref|YP_008428956.1| - 2.5e-66 222.3 0.0 3.8e-66 221.7 0.0 1.2 1 0 0 1 1 1 1 GTP cyclohydrolase II DHBP_synthase PF00926.19 gi|530548415|ref|YP_008428956.1| - 2e-48 164.5 0.0 2.7e-48 164.1 0.0 1.1 1 0 0 1 1 1 1 3,4-dihydroxy-2-butanone 4-phosphate synthase DUF4224 PF13986.6 gi|530548415|ref|YP_008428956.1| - 0.18 11.7 0.0 0.92 9.5 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4224) DMRL_synthase PF00885.19 gi|530548416|ref|YP_008428957.1| - 2.5e-51 173.2 0.0 2.9e-51 173.0 0.0 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase IMP_cyclohyd PF07826.11 gi|530548417|ref|YP_008428958.1| - 1.6e-48 164.9 0.0 1.8e-48 164.7 0.0 1.0 1 0 0 1 1 1 1 IMP cyclohydrolase-like protein DUF1297 PF06973.12 gi|530548418|ref|YP_008428959.1| - 1.5e-37 129.0 0.0 2.7e-37 128.2 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1297) DUF1246 PF06849.12 gi|530548418|ref|YP_008428959.1| - 2.6e-32 111.4 0.0 4.6e-32 110.6 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1246) SAICAR_synt PF01259.18 gi|530548419|ref|YP_008428960.1| - 2.1e-32 112.7 0.2 4e-32 111.8 0.2 1.4 1 1 0 1 1 1 1 SAICAR synthetase ThiC_Rad_SAM PF01964.18 gi|530548420|ref|YP_008428961.1| - 7.1e-181 601.5 0.0 8e-181 601.4 0.0 1.0 1 0 0 1 1 1 1 Radical SAM ThiC family Cdc6_C PF09079.11 gi|530548420|ref|YP_008428961.1| - 0.026 14.5 0.0 7.2 6.7 0.0 2.7 2 0 0 2 2 2 0 CDC6, C terminal winged helix domain PEP_mutase PF13714.6 gi|530548420|ref|YP_008428961.1| - 0.095 12.1 0.4 0.28 10.6 0.3 1.9 2 0 0 2 2 2 0 Phosphoenolpyruvate phosphomutase Thi4 PF01946.17 gi|530548421|ref|YP_008428962.1| - 1.9e-82 276.0 2.3 2.2e-82 275.8 2.3 1.1 1 0 0 1 1 1 1 Thi4 family FAD_oxidored PF12831.7 gi|530548421|ref|YP_008428962.1| - 3.3e-11 43.2 1.7 4.4e-11 42.8 1.7 1.1 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|530548421|ref|YP_008428962.1| - 1.2e-08 34.5 8.3 5.6e-05 22.4 2.2 2.8 2 1 0 3 3 3 2 FAD binding domain DAO PF01266.24 gi|530548421|ref|YP_008428962.1| - 1.5e-08 34.6 7.4 0.00077 19.1 3.7 2.1 1 1 1 2 2 2 2 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|530548421|ref|YP_008428962.1| - 4.2e-08 33.3 1.5 1.1e-07 32.0 1.5 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.14 gi|530548421|ref|YP_008428962.1| - 2.7e-06 26.9 0.2 3.6e-06 26.4 0.2 1.3 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|530548421|ref|YP_008428962.1| - 2.8e-06 26.3 5.3 7.4e-06 24.9 4.2 1.9 1 1 1 2 2 2 1 HI0933-like protein FAD_binding_3 PF01494.19 gi|530548421|ref|YP_008428962.1| - 7.5e-06 25.4 1.0 3.7e-05 23.1 1.0 2.0 1 1 0 1 1 1 1 FAD binding domain GIDA PF01134.22 gi|530548421|ref|YP_008428962.1| - 0.0094 15.1 2.5 0.0094 15.1 2.5 1.6 2 0 0 2 2 2 1 Glucose inhibited division protein A NAD_binding_9 PF13454.6 gi|530548421|ref|YP_008428962.1| - 0.017 15.1 0.8 0.19 11.7 1.4 2.3 2 0 0 2 2 2 0 FAD-NAD(P)-binding Pyr_redox PF00070.27 gi|530548421|ref|YP_008428962.1| - 0.11 13.1 1.0 0.11 13.1 1.0 2.4 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Amino_oxidase PF01593.24 gi|530548421|ref|YP_008428962.1| - 0.16 11.2 0.2 0.56 9.4 0.1 1.8 2 0 0 2 2 2 0 Flavin containing amine oxidoreductase Trp_halogenase PF04820.14 gi|530548421|ref|YP_008428962.1| - 0.17 10.7 1.0 7.4 5.3 0.6 2.1 2 0 0 2 2 2 0 Tryptophan halogenase Pyr_redox_3 PF13738.6 gi|530548421|ref|YP_008428962.1| - 0.24 10.6 4.9 0.14 11.4 2.3 1.9 2 1 1 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase SOR_SNZ PF01680.17 gi|530548422|ref|YP_008428963.1| - 1.2e-98 329.0 7.1 4.1e-95 317.4 6.1 2.3 1 1 1 2 2 2 2 SOR/SNZ family ThiG PF05690.14 gi|530548422|ref|YP_008428963.1| - 1.7e-10 40.6 5.4 4.8e-08 32.6 0.3 2.4 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG Dus PF01207.17 gi|530548422|ref|YP_008428963.1| - 0.00096 18.3 1.1 0.27 10.3 0.0 2.4 2 1 0 2 2 2 2 Dihydrouridine synthase (Dus) NanE PF04131.14 gi|530548422|ref|YP_008428963.1| - 0.0027 16.9 3.4 0.034 13.3 0.0 2.8 2 1 0 2 2 2 1 Putative N-acetylmannosamine-6-phosphate epimerase IGPS PF00218.21 gi|530548422|ref|YP_008428963.1| - 0.0055 15.9 0.1 0.19 10.9 0.0 2.4 2 0 0 2 2 2 1 Indole-3-glycerol phosphate synthase NMO PF03060.15 gi|530548422|ref|YP_008428963.1| - 0.045 13.1 5.6 0.5 9.7 0.0 2.3 2 0 0 2 2 2 0 Nitronate monooxygenase TetR_C_27 PF17935.1 gi|530548422|ref|YP_008428963.1| - 0.055 13.5 0.0 0.14 12.3 0.0 1.6 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain OMPdecase PF00215.24 gi|530548422|ref|YP_008428963.1| - 0.056 13.0 0.4 0.16 11.6 0.0 1.9 2 1 0 2 2 2 0 Orotidine 5'-phosphate decarboxylase / HUMPS family SNO PF01174.19 gi|530548423|ref|YP_008428964.1| - 1.5e-57 194.5 0.0 1.7e-57 194.3 0.0 1.0 1 0 0 1 1 1 1 SNO glutamine amidotransferase family GATase_3 PF07685.14 gi|530548423|ref|YP_008428964.1| - 1e-11 44.8 0.0 1.4e-11 44.4 0.0 1.3 1 1 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.28 gi|530548423|ref|YP_008428964.1| - 1.1e-08 35.0 0.0 1.8e-08 34.4 0.0 1.3 1 1 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_S51 PF03575.17 gi|530548423|ref|YP_008428964.1| - 3.1e-06 27.0 0.1 4.1e-06 26.6 0.1 1.2 1 0 0 1 1 1 1 Peptidase family S51 DJ-1_PfpI PF01965.24 gi|530548423|ref|YP_008428964.1| - 0.0011 18.7 0.1 0.0015 18.4 0.1 1.2 1 0 0 1 1 1 1 DJ-1/PfpI family DUF1297 PF06973.12 gi|530548424|ref|YP_008428965.1| - 4.1e-74 248.2 0.1 5.5e-74 247.8 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1297) DUF1246 PF06849.12 gi|530548424|ref|YP_008428965.1| - 2.6e-34 117.8 0.0 4.2e-34 117.1 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1246) CPSase_L_D2 PF02786.17 gi|530548424|ref|YP_008428965.1| - 0.0058 16.1 0.0 0.016 14.7 0.0 1.7 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp_3 PF02655.14 gi|530548424|ref|YP_008428965.1| - 0.016 15.2 0.0 0.12 12.4 0.0 2.1 1 1 0 1 1 1 0 ATP-grasp domain DDE_Tnp_IS66 PF03050.14 gi|530548425|ref|YP_008428966.1| - 0.0062 16.1 0.0 0.0067 15.9 0.0 1.1 1 0 0 1 1 1 1 Transposase IS66 family DDE_Tnp_1_2 PF13586.6 gi|530548426|ref|YP_008428967.1| - 0.091 13.1 0.0 0.12 12.8 0.0 1.1 1 0 0 1 1 1 0 Transposase DDE domain IMPDH PF00478.25 gi|530548428|ref|YP_008428969.1| - 5.7e-148 492.5 12.8 6.5e-148 492.3 12.8 1.0 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain CBS PF00571.28 gi|530548428|ref|YP_008428969.1| - 1e-29 102.7 8.4 3e-17 62.8 1.0 3.3 3 1 0 3 3 3 2 CBS domain NMO PF03060.15 gi|530548428|ref|YP_008428969.1| - 9.2e-08 31.8 9.0 0.012 15.1 6.8 3.2 3 1 0 3 3 3 2 Nitronate monooxygenase FMN_dh PF01070.18 gi|530548428|ref|YP_008428969.1| - 2.7e-07 29.9 10.7 1.3e-06 27.7 9.4 2.6 2 1 0 2 2 2 1 FMN-dependent dehydrogenase Glu_synthase PF01645.17 gi|530548428|ref|YP_008428969.1| - 9.3e-07 28.3 5.1 1.8e-06 27.3 5.1 1.5 1 0 0 1 1 1 1 Conserved region in glutamate synthase His_biosynth PF00977.21 gi|530548428|ref|YP_008428969.1| - 0.0006 19.3 3.7 0.0035 16.8 3.5 2.3 1 1 0 1 1 1 1 Histidine biosynthesis protein Zeta_toxin PF06414.12 gi|530548428|ref|YP_008428969.1| - 0.06 12.6 0.0 0.38 10.0 0.0 2.3 2 0 0 2 2 2 0 Zeta toxin ThiG PF05690.14 gi|530548428|ref|YP_008428969.1| - 0.11 11.8 10.5 0.026 13.8 3.0 2.9 2 1 1 3 3 3 0 Thiazole biosynthesis protein ThiG AFT PF08731.11 gi|530548428|ref|YP_008428969.1| - 0.13 12.7 0.0 0.27 11.7 0.0 1.6 1 0 0 1 1 1 0 Transcription factor AFT DUF3659 PF12396.8 gi|530548428|ref|YP_008428969.1| - 0.27 11.2 2.0 4.9 7.1 0.1 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3659) GMP_synt_C PF00958.22 gi|530548429|ref|YP_008428970.1| - 1.3e-34 118.1 0.0 2.5e-34 117.2 0.0 1.5 1 0 0 1 1 1 1 GMP synthase C terminal domain NAD_synthase PF02540.17 gi|530548429|ref|YP_008428970.1| - 1.2e-12 47.5 0.0 5.9e-06 25.6 0.0 2.2 2 0 0 2 2 2 2 NAD synthase ThiI PF02568.14 gi|530548429|ref|YP_008428970.1| - 4.7e-05 23.1 0.0 0.0001 22.0 0.0 1.5 1 1 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) tRNA_Me_trans PF03054.16 gi|530548429|ref|YP_008428970.1| - 7.3e-05 21.7 0.1 0.012 14.4 0.0 2.2 2 0 0 2 2 2 2 tRNA methyl transferase QueC PF06508.13 gi|530548429|ref|YP_008428970.1| - 7.9e-05 22.2 0.0 0.004 16.7 0.0 2.3 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC PAPS_reduct PF01507.19 gi|530548429|ref|YP_008428970.1| - 0.0016 18.5 0.0 0.0028 17.7 0.0 1.4 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family ATP_bind_3 PF01171.20 gi|530548429|ref|YP_008428970.1| - 0.018 14.8 0.0 0.04 13.7 0.0 1.6 1 1 0 1 1 1 0 PP-loop family Asn_synthase PF00733.21 gi|530548429|ref|YP_008428970.1| - 0.031 13.9 0.1 0.062 13.0 0.0 1.5 2 0 0 2 2 2 0 Asparagine synthase GATase PF00117.28 gi|530548430|ref|YP_008428971.1| - 1.8e-45 155.1 0.1 2.2e-45 154.8 0.1 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|530548430|ref|YP_008428971.1| - 2.4e-14 53.6 0.2 6.1e-13 49.0 0.1 2.6 1 1 1 2 2 2 1 Peptidase C26 SNO PF01174.19 gi|530548430|ref|YP_008428971.1| - 0.029 14.2 0.0 0.77 9.6 0.0 2.1 1 1 0 1 1 1 0 SNO glutamine amidotransferase family GST_N_2 PF13409.6 gi|530548430|ref|YP_008428971.1| - 0.067 13.5 0.0 0.41 11.0 0.0 2.1 2 0 0 2 2 2 0 Glutathione S-transferase, N-terminal domain DUF1264 PF06884.11 gi|530548430|ref|YP_008428971.1| - 0.11 12.1 0.1 0.16 11.6 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1264) PS_pyruv_trans PF04230.13 gi|530548430|ref|YP_008428971.1| - 0.18 11.7 0.0 0.28 11.0 0.0 1.2 1 0 0 1 1 1 0 Polysaccharide pyruvyl transferase DUF5012 PF16404.5 gi|530548430|ref|YP_008428971.1| - 0.22 11.7 0.0 0.3 11.2 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF5012) DUF2101 PF09874.9 gi|530548431|ref|YP_008428972.1| - 7.7e-62 208.7 14.5 8.7e-62 208.5 14.5 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2101) FA_desaturase PF00487.24 gi|530548431|ref|YP_008428972.1| - 0.27 11.1 6.2 0.3 10.9 6.2 1.1 1 0 0 1 1 1 0 Fatty acid desaturase SLAC1 PF03595.17 gi|530548431|ref|YP_008428972.1| - 0.78 8.9 7.1 1 8.6 7.1 1.1 1 0 0 1 1 1 0 Voltage-dependent anion channel DHHC PF01529.20 gi|530548431|ref|YP_008428972.1| - 9.6 6.3 14.7 3.3 7.8 7.4 2.1 1 1 1 2 2 2 0 DHHC palmitoyltransferase DUF2101 PF09874.9 gi|530548432|ref|YP_008428973.1| - 4.5e-06 26.5 0.7 5.4e-06 26.3 0.7 1.1 1 0 0 1 1 1 1 Predicted membrane protein (DUF2101) DUF2341 PF10102.9 gi|530548433|ref|YP_008428974.1| - 2.1e-12 47.4 6.3 2.5e-12 47.2 4.0 2.4 2 0 0 2 2 2 1 Domain of unknown function (DUF2341) Sox17_18_mid PF12067.8 gi|530548434|ref|YP_008428975.1| - 0.041 13.9 0.1 0.13 12.3 0.1 1.8 2 0 0 2 2 2 0 Sox 17/18 central domain DUF4245 PF14030.6 gi|530548435|ref|YP_008428976.1| - 0.09 12.8 0.0 0.14 12.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4245) ABC2_membrane_3 PF12698.7 gi|530548436|ref|YP_008428977.1| - 0.016 14.4 4.1 0.019 14.1 4.1 1.0 1 0 0 1 1 1 0 ABC-2 family transporter protein Class_IIIsignal PF04021.12 gi|530548438|ref|YP_008428979.1| - 1.2e-05 25.1 0.6 2.3e-05 24.2 0.6 1.5 1 0 0 1 1 1 1 Class III signal peptide TadF PF16964.5 gi|530548438|ref|YP_008428979.1| - 0.014 15.1 1.1 0.026 14.3 1.1 1.4 1 0 0 1 1 1 0 Putative tight adherence pilin protein F Tubulin PF00091.25 gi|530548440|ref|YP_008428981.1| - 1.3e-29 103.8 0.2 5.5e-27 95.2 0.0 2.3 1 1 1 2 2 2 2 Tubulin/FtsZ family, GTPase domain Tubulin_2 PF13809.6 gi|530548440|ref|YP_008428981.1| - 0.054 12.7 0.0 0.14 11.4 0.0 1.6 1 1 0 1 1 1 0 Tubulin like RPN6_C_helix PF18503.1 gi|530548440|ref|YP_008428981.1| - 0.073 12.8 0.1 0.16 11.8 0.1 1.6 1 0 0 1 1 1 0 26S proteasome subunit RPN6 C-terminal helix domain Zn_peptidase_2 PF04298.12 gi|530548440|ref|YP_008428981.1| - 0.095 12.1 0.0 0.19 11.1 0.0 1.4 1 0 0 1 1 1 0 Putative neutral zinc metallopeptidase 2-Hacid_dh_C PF02826.19 gi|530548440|ref|YP_008428981.1| - 0.11 11.8 0.0 0.21 11.0 0.0 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SQHop_cyclase_N PF13249.6 gi|530548441|ref|YP_008428982.1| - 3.2e-14 52.7 0.1 0.0043 16.2 0.1 5.7 6 0 0 6 6 6 3 Squalene-hopene cyclase N-terminal domain SQHop_cyclase_C PF13243.6 gi|530548441|ref|YP_008428982.1| - 1e-11 44.5 0.7 1.1e-05 24.7 0.0 4.9 3 2 1 5 5 5 3 Squalene-hopene cyclase C-terminal domain Prenyltrans PF00432.21 gi|530548441|ref|YP_008428982.1| - 5.6e-09 35.6 1.6 0.011 15.5 0.0 4.3 3 0 0 3 3 3 3 Prenyltransferase and squalene oxidase repeat TED_complement PF07678.14 gi|530548441|ref|YP_008428982.1| - 0.0015 17.6 0.3 4 6.4 0.0 3.7 3 1 1 4 4 4 2 A-macroglobulin TED domain Radical_SAM PF04055.21 gi|530548442|ref|YP_008428983.1| - 1.6e-25 90.4 0.1 4.1e-25 89.1 0.1 1.7 1 1 0 1 1 1 1 Radical SAM superfamily Wyosine_form PF08608.12 gi|530548442|ref|YP_008428983.1| - 2.9e-19 69.2 0.0 5.3e-19 68.3 0.0 1.5 1 0 0 1 1 1 1 Wyosine base formation Fer4_12 PF13353.6 gi|530548442|ref|YP_008428983.1| - 2.3e-05 24.7 0.3 0.0096 16.2 0.3 2.4 2 1 0 2 2 2 2 4Fe-4S single cluster domain DUF1776 PF08643.10 gi|530548442|ref|YP_008428983.1| - 0.015 14.7 0.0 0.023 14.1 0.0 1.3 1 0 0 1 1 1 0 Fungal family of unknown function (DUF1776) Hydrolase PF00702.26 gi|530548442|ref|YP_008428983.1| - 0.12 12.6 0.0 0.2 11.9 0.0 1.4 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|530548442|ref|YP_008428983.1| - 0.13 12.6 0.0 0.28 11.6 0.0 1.5 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase MTS PF05175.14 gi|530548444|ref|YP_008428985.1| - 9.7e-20 70.8 0.0 6.8e-19 68.0 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.6 gi|530548444|ref|YP_008428985.1| - 1.7e-19 70.1 0.0 2.3e-19 69.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|530548444|ref|YP_008428985.1| - 3.6e-13 49.6 0.6 5.8e-13 48.9 0.2 1.4 2 0 0 2 2 2 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_25 PF13649.6 gi|530548444|ref|YP_008428985.1| - 1.4e-11 45.0 0.0 4.7e-11 43.2 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|530548444|ref|YP_008428985.1| - 1.1e-09 38.8 0.0 3.2e-09 37.3 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.16 gi|530548444|ref|YP_008428985.1| - 5.1e-09 36.2 0.1 6.6e-09 35.8 0.1 1.3 1 1 0 1 1 1 1 Met-10+ like-protein Methyltransf_23 PF13489.6 gi|530548444|ref|YP_008428985.1| - 2.7e-08 33.8 0.0 5.4e-08 32.8 0.0 1.4 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_18 PF12847.7 gi|530548444|ref|YP_008428985.1| - 9e-07 28.9 0.0 2.7e-06 27.4 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain PCMT PF01135.19 gi|530548444|ref|YP_008428985.1| - 1.6e-06 28.0 0.0 2.5e-06 27.4 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_12 PF08242.12 gi|530548444|ref|YP_008428985.1| - 4.5e-06 27.3 0.0 1.1e-05 26.1 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|530548444|ref|YP_008428985.1| - 1.7e-05 24.3 0.2 3.4e-05 23.3 0.1 1.4 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family CMAS PF02353.20 gi|530548444|ref|YP_008428985.1| - 9.8e-05 21.8 0.0 0.0003 20.2 0.0 1.6 1 1 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_4 PF02390.17 gi|530548444|ref|YP_008428985.1| - 0.00017 21.1 0.2 0.0056 16.2 0.1 2.2 2 0 0 2 2 2 1 Putative methyltransferase UPF0020 PF01170.18 gi|530548444|ref|YP_008428985.1| - 0.00019 21.2 0.0 0.00032 20.4 0.0 1.5 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 TRM PF02005.16 gi|530548444|ref|YP_008428985.1| - 0.00063 19.0 0.2 0.0022 17.2 0.1 1.7 1 1 0 2 2 2 1 N2,N2-dimethylguanosine tRNA methyltransferase Methyltransf_15 PF09445.10 gi|530548444|ref|YP_008428985.1| - 0.0019 17.8 0.0 0.0021 17.6 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase rRNA_methylase PF06962.12 gi|530548444|ref|YP_008428985.1| - 0.0031 17.5 0.0 0.098 12.6 0.0 2.2 2 1 0 2 2 2 1 Putative rRNA methylase N6_Mtase PF02384.16 gi|530548444|ref|YP_008428985.1| - 0.0033 16.8 0.0 0.0052 16.1 0.0 1.2 1 0 0 1 1 1 1 N-6 DNA Methylase Sigma_reg_C PF13791.6 gi|530548444|ref|YP_008428985.1| - 0.0076 16.5 0.1 0.011 16.0 0.1 1.2 1 0 0 1 1 1 1 Sigma factor regulator C-terminal TPMT PF05724.11 gi|530548444|ref|YP_008428985.1| - 0.0079 15.9 0.0 0.011 15.4 0.0 1.2 1 0 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) DOT1 PF08123.13 gi|530548444|ref|YP_008428985.1| - 0.015 14.8 0.0 0.023 14.2 0.0 1.3 1 0 0 1 1 1 0 Histone methylation protein DOT1 AviRa PF11599.8 gi|530548444|ref|YP_008428985.1| - 0.031 13.7 0.0 0.12 11.9 0.0 1.8 2 0 0 2 2 2 0 RRNA methyltransferase AviRa Methyltransf_24 PF13578.6 gi|530548444|ref|YP_008428985.1| - 0.04 14.9 0.0 0.062 14.3 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain tRNA_U5-meth_tr PF05958.11 gi|530548444|ref|YP_008428985.1| - 0.042 12.8 0.1 0.061 12.3 0.1 1.2 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase DUF2431 PF10354.9 gi|530548444|ref|YP_008428985.1| - 0.05 13.9 0.0 0.068 13.4 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF2431) MethyltransfD12 PF02086.15 gi|530548444|ref|YP_008428985.1| - 0.081 12.6 0.2 0.14 11.8 0.0 1.5 2 0 0 2 2 2 0 D12 class N6 adenine-specific DNA methyltransferase Methyltransf_16 PF10294.9 gi|530548444|ref|YP_008428985.1| - 0.098 12.4 0.2 0.18 11.5 0.1 1.4 2 0 0 2 2 1 0 Lysine methyltransferase Methyltr_RsmB-F PF01189.17 gi|530548444|ref|YP_008428985.1| - 0.099 12.3 0.0 0.17 11.5 0.0 1.3 1 0 0 1 1 1 0 16S rRNA methyltransferase RsmB/F NodS PF05401.11 gi|530548444|ref|YP_008428985.1| - 0.16 11.5 0.0 0.41 10.2 0.0 1.6 2 0 0 2 2 2 0 Nodulation protein S (NodS) LexA_DNA_bind PF01726.16 gi|530548444|ref|YP_008428985.1| - 0.2 11.5 0.0 0.35 10.7 0.0 1.5 1 0 0 1 1 1 0 LexA DNA binding domain Ribosomal_S27 PF01599.19 gi|530548445|ref|YP_008428986.1| - 8.1e-23 80.3 2.6 9.2e-23 80.2 2.6 1.1 1 0 0 1 1 1 1 Ribosomal protein S27a Ribosomal_L37e PF01907.19 gi|530548445|ref|YP_008428986.1| - 0.00093 19.3 2.4 0.0015 18.7 2.4 1.4 1 0 0 1 1 1 1 Ribosomal protein L37e RNA_POL_M_15KD PF02150.16 gi|530548445|ref|YP_008428986.1| - 0.0024 17.7 2.5 0.0066 16.3 2.5 1.7 1 1 0 1 1 1 1 RNA polymerases M/15 Kd subunit GFA PF04828.14 gi|530548445|ref|YP_008428986.1| - 0.0044 17.3 1.7 0.037 14.4 0.5 2.0 1 1 1 2 2 2 1 Glutathione-dependent formaldehyde-activating enzyme zf-NADH-PPase PF09297.11 gi|530548445|ref|YP_008428986.1| - 0.005 16.5 0.6 0.005 16.5 0.6 2.3 2 0 0 2 2 2 1 NADH pyrophosphatase zinc ribbon domain DZR PF12773.7 gi|530548445|ref|YP_008428986.1| - 0.018 15.0 3.0 28 4.8 0.2 1.8 1 1 0 1 1 1 0 Double zinc ribbon Zn_Tnp_IS1595 PF12760.7 gi|530548445|ref|YP_008428986.1| - 0.029 14.3 5.6 0.039 13.9 5.3 1.4 1 1 0 1 1 1 0 Transposase zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|530548445|ref|YP_008428986.1| - 0.029 14.3 1.0 0.035 14.0 1.0 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Nudix_N_2 PF14803.6 gi|530548445|ref|YP_008428986.1| - 0.056 13.4 6.8 0.32 11.0 6.8 2.0 1 1 0 1 1 1 0 Nudix N-terminal zinc_ribbon_2 PF13240.6 gi|530548445|ref|YP_008428986.1| - 0.18 11.5 0.4 0.18 11.5 0.4 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf_UBZ PF18439.1 gi|530548445|ref|YP_008428986.1| - 0.21 11.2 3.2 7.2 6.3 0.2 2.3 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger Ribosomal_S24e PF01282.19 gi|530548446|ref|YP_008428987.1| - 1.2e-25 89.3 0.0 1.4e-25 89.0 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S24e DUF359 PF04019.12 gi|530548447|ref|YP_008428988.1| - 4.8e-40 136.1 0.0 6.6e-40 135.7 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF359) Spt4 PF06093.13 gi|530548448|ref|YP_008428989.1| - 2.4e-16 59.6 0.0 2.9e-16 59.3 0.0 1.1 1 0 0 1 1 1 1 Spt4/RpoE2 zinc finger RecR PF02132.15 gi|530548448|ref|YP_008428989.1| - 0.0023 17.5 3.7 0.0032 17.0 3.7 1.2 1 0 0 1 1 1 1 RecR protein Prok-RING_4 PF14447.6 gi|530548448|ref|YP_008428989.1| - 0.021 14.7 1.7 0.028 14.3 1.7 1.2 1 0 0 1 1 1 0 Prokaryotic RING finger family 4 zf-ribbon_3 PF13248.6 gi|530548448|ref|YP_008428989.1| - 0.054 12.9 2.6 0.24 10.9 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain Rad50_zn_hook PF04423.14 gi|530548448|ref|YP_008428989.1| - 0.058 13.2 0.2 0.13 12.1 0.2 1.6 2 0 0 2 2 2 0 Rad50 zinc hook motif NRDD PF13597.6 gi|530548448|ref|YP_008428989.1| - 0.071 11.9 1.0 0.075 11.8 1.0 1.0 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase zf-RRN7 PF11781.8 gi|530548448|ref|YP_008428989.1| - 0.1 12.3 0.1 0.1 12.3 0.1 2.2 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 HypA PF01155.19 gi|530548448|ref|YP_008428989.1| - 0.17 11.9 2.2 0.24 11.4 2.2 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Prim_Zn_Ribbon PF08273.12 gi|530548448|ref|YP_008428989.1| - 0.18 12.1 0.8 0.18 12.1 0.8 2.1 1 1 1 2 2 2 0 Zinc-binding domain of primase-helicase DUF35_N PF12172.8 gi|530548448|ref|YP_008428989.1| - 1.4 8.9 6.9 4 7.4 6.9 1.7 1 1 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) SHS2_Rpb7-N PF03876.17 gi|530548449|ref|YP_008428990.1| - 6.4e-20 71.3 0.1 1.3e-19 70.4 0.1 1.5 1 0 0 1 1 1 1 SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 S1 PF00575.23 gi|530548449|ref|YP_008428990.1| - 2.1e-15 56.8 1.2 7.9e-15 55.0 1.2 1.9 1 1 0 1 1 1 1 S1 RNA binding domain Pyrophosphatase PF00719.19 gi|530548450|ref|YP_008428991.1| - 3.4e-57 192.7 0.4 3.9e-57 192.5 0.4 1.0 1 0 0 1 1 1 1 Inorganic pyrophosphatase SpoIIM PF01944.17 gi|530548451|ref|YP_008428992.1| - 4e-06 26.9 2.3 4e-06 26.9 2.3 1.1 1 0 0 1 1 1 1 Stage II sporulation protein M SpoIIM PF01944.17 gi|530548452|ref|YP_008428993.1| - 6.5e-15 55.5 4.6 6.9e-15 55.4 4.6 1.0 1 0 0 1 1 1 1 Stage II sporulation protein M AAA_14 PF13173.6 gi|530548453|ref|YP_008428994.1| - 4.1e-38 130.4 0.6 2.1e-37 128.1 0.2 2.3 2 0 0 2 2 2 1 AAA domain DUF4143 PF13635.6 gi|530548453|ref|YP_008428994.1| - 6e-12 45.8 0.0 1.1e-11 45.0 0.0 1.6 1 1 0 1 1 1 1 Domain of unknown function (DUF4143) AAA_22 PF13401.6 gi|530548453|ref|YP_008428994.1| - 7.4e-05 23.0 0.0 0.0028 17.9 0.0 2.9 2 1 0 2 2 2 1 AAA domain ATPase_2 PF01637.18 gi|530548453|ref|YP_008428994.1| - 9.5e-05 22.4 0.3 0.027 14.4 0.1 2.8 2 1 1 3 3 3 2 ATPase domain predominantly from Archaea AAA_18 PF13238.6 gi|530548453|ref|YP_008428994.1| - 0.0028 18.2 0.2 4 8.0 0.0 3.0 2 1 0 2 2 2 2 AAA domain RNA_helicase PF00910.22 gi|530548453|ref|YP_008428994.1| - 0.0055 17.1 0.0 0.081 13.3 0.0 2.6 3 0 0 3 3 3 1 RNA helicase AAA_24 PF13479.6 gi|530548453|ref|YP_008428994.1| - 0.01 15.6 0.1 0.099 12.4 0.0 2.4 3 0 0 3 3 3 0 AAA domain MobB PF03205.14 gi|530548453|ref|YP_008428994.1| - 0.16 11.9 0.0 0.43 10.5 0.0 1.7 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B Epimerase PF01370.21 gi|530548454|ref|YP_008428995.1| - 2.8e-56 190.7 0.0 3.7e-56 190.3 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|530548454|ref|YP_008428995.1| - 1.1e-53 182.8 0.1 3e-53 181.4 0.1 1.6 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 gi|530548454|ref|YP_008428995.1| - 1.2e-24 86.8 0.0 1.5e-24 86.5 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.17 gi|530548454|ref|YP_008428995.1| - 1.7e-18 66.8 0.0 2.6e-18 66.1 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.15 gi|530548454|ref|YP_008428995.1| - 1e-16 61.0 0.0 7.8e-16 58.1 0.0 1.9 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.6 gi|530548454|ref|YP_008428995.1| - 3.8e-14 53.0 0.0 5.8e-14 52.4 0.0 1.2 1 0 0 1 1 1 1 NAD(P)H-binding NmrA PF05368.13 gi|530548454|ref|YP_008428995.1| - 3.7e-12 46.3 0.0 5.1e-09 36.0 0.0 2.2 2 0 0 2 2 2 2 NmrA-like family NAD_binding_4 PF07993.12 gi|530548454|ref|YP_008428995.1| - 7.2e-12 45.0 0.1 6.3e-10 38.6 0.1 2.5 1 1 0 1 1 1 1 Male sterility protein adh_short PF00106.25 gi|530548454|ref|YP_008428995.1| - 4.3e-08 32.8 0.2 6.4e-07 29.0 0.0 2.4 3 0 0 3 3 3 1 short chain dehydrogenase KR PF08659.10 gi|530548454|ref|YP_008428995.1| - 0.003 17.5 0.2 0.021 14.7 0.2 2.1 1 1 0 1 1 1 1 KR domain TrkA_N PF02254.18 gi|530548454|ref|YP_008428995.1| - 0.0038 17.5 0.0 0.007 16.6 0.0 1.4 1 0 0 1 1 1 1 TrkA-N domain Sacchrp_dh_NADP PF03435.18 gi|530548454|ref|YP_008428995.1| - 0.028 14.7 0.0 0.045 14.0 0.0 1.3 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain PHB_acc_N PF07879.11 gi|530548454|ref|YP_008428995.1| - 0.09 12.9 0.0 20 5.3 0.0 2.6 2 0 0 2 2 2 0 PHB/PHA accumulation regulator DNA-binding domain NAD_binding_2 PF03446.15 gi|530548454|ref|YP_008428995.1| - 0.14 12.3 0.0 0.28 11.3 0.0 1.4 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase DUF1805 PF08827.11 gi|530548454|ref|YP_008428995.1| - 0.16 12.3 1.1 1.3 9.4 0.0 2.8 3 0 0 3 3 3 0 Domain of unknown function (DUF1805) NTP_transferase PF00483.23 gi|530548455|ref|YP_008428996.1| - 3.2e-39 135.0 0.0 3.8e-39 134.8 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|530548455|ref|YP_008428996.1| - 4.4e-11 43.4 0.0 5.6e-11 43.0 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.24 gi|530548455|ref|YP_008428996.1| - 6.7e-06 25.6 3.2 0.0014 18.3 0.9 3.7 3 1 1 4 4 4 2 Bacterial transferase hexapeptide (six repeats) YAcAr PF10686.9 gi|530548455|ref|YP_008428996.1| - 0.064 13.2 0.0 0.23 11.4 0.0 1.9 2 0 0 2 2 2 0 YspA, cpYpsA-related SLOG family TrmK PF04816.12 gi|530548455|ref|YP_008428996.1| - 0.13 11.8 0.1 0.34 10.4 0.1 1.6 2 0 0 2 2 2 0 tRNA (adenine(22)-N(1))-methyltransferase Trans_coact PF16805.5 gi|530548455|ref|YP_008428996.1| - 0.13 12.3 1.3 0.31 11.2 0.1 2.1 2 0 0 2 2 2 0 Phage late-transcription coactivator Polysacc_synt PF01943.17 gi|530548456|ref|YP_008428997.1| - 7.9e-30 104.2 20.4 7.9e-30 104.2 20.4 2.1 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.6 gi|530548456|ref|YP_008428997.1| - 1.3e-17 64.2 7.5 1.3e-17 64.2 7.5 4.4 2 1 1 4 4 4 1 Polysaccharide biosynthesis C-terminal domain Polysacc_synt_3 PF13440.6 gi|530548456|ref|YP_008428997.1| - 6.9e-14 51.7 15.2 6.9e-14 51.7 15.2 1.8 1 1 1 2 2 2 1 Polysaccharide biosynthesis protein MatE PF01554.18 gi|530548456|ref|YP_008428997.1| - 7.8e-06 25.6 11.8 7.8e-06 25.6 11.8 3.4 2 1 1 3 3 3 1 MatE UDPG_MGDP_dh_N PF03721.14 gi|530548457|ref|YP_008428998.1| - 5.9e-64 215.1 0.6 8.3e-64 214.6 0.6 1.2 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.19 gi|530548457|ref|YP_008428998.1| - 4.8e-39 132.5 0.0 9.2e-39 131.6 0.0 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.15 gi|530548457|ref|YP_008428998.1| - 9.5e-29 99.9 0.2 1.9e-26 92.5 0.0 3.1 2 1 1 3 3 3 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain F420_oxidored PF03807.17 gi|530548457|ref|YP_008428998.1| - 2.1e-06 28.2 2.4 0.58 10.8 0.0 4.7 4 1 0 5 5 5 3 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 gi|530548457|ref|YP_008428998.1| - 0.00063 20.0 0.1 2.1 8.5 0.1 3.3 2 1 0 3 3 3 1 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.19 gi|530548457|ref|YP_008428998.1| - 0.0043 16.4 0.7 3.6 6.9 0.1 3.1 2 1 0 2 2 2 2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ApbA PF02558.16 gi|530548457|ref|YP_008428998.1| - 0.01 15.5 0.3 0.53 9.9 0.1 2.9 2 1 0 2 2 2 0 Ketopantoate reductase PanE/ApbA Pyr_redox_2 PF07992.14 gi|530548457|ref|YP_008428998.1| - 0.016 14.5 0.0 0.038 13.2 0.0 1.7 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|530548457|ref|YP_008428998.1| - 0.019 15.5 0.6 0.068 13.7 0.1 2.3 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.18 gi|530548457|ref|YP_008428998.1| - 0.048 13.5 0.0 0.11 12.4 0.0 1.6 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NTP_transferase PF00483.23 gi|530548458|ref|YP_008428999.1| - 1.1e-35 123.4 0.0 1.4e-35 123.1 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|530548458|ref|YP_008428999.1| - 4e-10 40.3 0.0 7.8e-10 39.3 0.0 1.5 1 1 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|530548458|ref|YP_008428999.1| - 0.0079 16.0 0.0 0.071 12.8 0.0 2.0 2 0 0 2 2 2 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Smr PF01713.21 gi|530548458|ref|YP_008428999.1| - 0.17 12.2 0.0 0.35 11.3 0.0 1.5 1 0 0 1 1 1 0 Smr domain GDP_Man_Dehyd PF16363.5 gi|530548459|ref|YP_008429000.1| - 6.9e-57 193.3 0.0 8.9e-57 193.0 0.0 1.1 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase Epimerase PF01370.21 gi|530548459|ref|YP_008429000.1| - 1.6e-53 181.6 0.0 2e-53 181.3 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|530548459|ref|YP_008429000.1| - 6.8e-14 51.5 0.0 9.5e-14 51.1 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.12 gi|530548459|ref|YP_008429000.1| - 1.5e-11 44.0 0.0 2.8e-08 33.3 0.0 2.4 2 1 0 2 2 2 2 Male sterility protein Polysacc_synt_2 PF02719.15 gi|530548459|ref|YP_008429000.1| - 1.5e-11 44.0 0.0 1.5e-05 24.3 0.0 2.3 2 1 0 2 2 2 2 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.17 gi|530548459|ref|YP_008429000.1| - 1.1e-09 37.9 0.0 1.5e-09 37.4 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain adh_short PF00106.25 gi|530548459|ref|YP_008429000.1| - 1.2e-05 24.8 0.0 2.3e-05 24.0 0.0 1.4 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|530548459|ref|YP_008429000.1| - 0.026 14.5 0.0 0.17 11.8 0.0 2.1 1 1 0 1 1 1 0 KR domain Glycos_transf_1 PF00534.20 gi|530548460|ref|YP_008429001.1| - 8.6e-27 93.8 0.0 1.3e-26 93.1 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|530548460|ref|YP_008429001.1| - 3.8e-26 92.1 0.0 7.6e-26 91.1 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|530548460|ref|YP_008429001.1| - 3.1e-09 37.1 0.0 5.3e-09 36.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|530548460|ref|YP_008429001.1| - 0.0002 21.4 0.0 0.00068 19.7 0.0 2.0 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glycos_transf_2 PF00535.26 gi|530548461|ref|YP_008429002.1| - 5e-39 133.8 0.1 7e-39 133.3 0.1 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|530548461|ref|YP_008429002.1| - 6.5e-28 98.2 0.0 9e-28 97.7 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|530548461|ref|YP_008429002.1| - 4.6e-17 62.4 0.0 9.2e-17 61.4 0.0 1.4 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 gi|530548461|ref|YP_008429002.1| - 2.2e-11 44.0 0.0 2.9e-11 43.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.6 gi|530548461|ref|YP_008429002.1| - 4.4e-08 32.8 0.0 1.3e-07 31.3 0.0 1.6 2 0 0 2 2 2 1 Glycosyl transferase family 21 Glyco_transf_7C PF02709.14 gi|530548461|ref|YP_008429002.1| - 1.2e-05 24.8 0.0 2.2e-05 24.0 0.0 1.4 1 0 0 1 1 1 1 N-terminal domain of galactosyltransferase Glyco_tranf_2_4 PF13704.6 gi|530548461|ref|YP_008429002.1| - 1.8e-05 25.2 0.0 0.00018 21.9 0.0 2.2 2 0 0 2 2 2 1 Glycosyl transferase family 2 Glyco_tranf_2_5 PF13712.6 gi|530548461|ref|YP_008429002.1| - 0.00091 19.0 0.1 0.0047 16.6 0.0 1.9 2 0 0 2 2 2 1 Glycosyltransferase like family Glyco_transf_49 PF13896.6 gi|530548461|ref|YP_008429002.1| - 0.005 16.2 0.0 0.0069 15.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyl-transferase for dystroglycan Chitin_synth_2 PF03142.15 gi|530548461|ref|YP_008429002.1| - 0.023 13.3 0.0 3 6.4 0.0 2.1 1 1 0 2 2 2 0 Chitin synthase Anp1 PF03452.14 gi|530548461|ref|YP_008429002.1| - 0.11 11.9 0.7 0.51 9.7 0.1 1.9 1 1 0 2 2 2 0 Anp1 Glyco_transf_64 PF09258.10 gi|530548461|ref|YP_008429002.1| - 0.13 11.5 0.0 0.23 10.7 0.0 1.3 1 0 0 1 1 1 0 Glycosyl transferase family 64 domain Glycos_transf_1 PF00534.20 gi|530548462|ref|YP_008429003.1| - 5.6e-18 65.1 0.0 1e-17 64.2 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|530548462|ref|YP_008429003.1| - 4.6e-16 59.5 0.0 5.7e-15 55.9 0.0 2.1 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|530548462|ref|YP_008429003.1| - 1.8e-06 28.1 0.0 4.6e-06 26.7 0.0 1.7 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|530548462|ref|YP_008429003.1| - 2.3e-06 28.2 0.0 6.5e-06 26.7 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glycos_transf_1 PF00534.20 gi|530548463|ref|YP_008429004.1| - 2.4e-41 141.1 0.0 4e-41 140.4 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|530548463|ref|YP_008429004.1| - 2.1e-29 102.6 0.0 3.8e-29 101.8 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|530548463|ref|YP_008429004.1| - 1.5e-12 47.8 0.1 2.6e-12 47.1 0.1 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.6 gi|530548463|ref|YP_008429004.1| - 8.9e-09 35.6 0.0 3.4e-08 33.8 0.0 2.0 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 gi|530548463|ref|YP_008429004.1| - 7.6e-05 22.8 0.8 0.00017 21.7 0.3 1.9 2 0 0 2 2 2 1 Glycosyl transferase 4-like Glyco_trans_4_4 PF13579.6 gi|530548463|ref|YP_008429004.1| - 0.00019 21.9 0.0 0.00027 21.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glycos_transf_1 PF00534.20 gi|530548464|ref|YP_008429005.1| - 3.9e-19 68.8 0.0 7.1e-19 68.0 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|530548464|ref|YP_008429005.1| - 4.9e-17 62.4 0.0 1.8e-09 37.8 0.0 3.3 2 1 0 2 2 2 2 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.6 gi|530548464|ref|YP_008429005.1| - 2.1e-15 57.3 0.0 4.7e-15 56.2 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_5 PF08323.11 gi|530548464|ref|YP_008429005.1| - 3.6e-08 33.4 0.0 5.9e-08 32.7 0.0 1.3 1 0 0 1 1 1 1 Starch synthase catalytic domain Glyco_trans_4_4 PF13579.6 gi|530548464|ref|YP_008429005.1| - 8.4e-06 26.3 0.0 2.2e-05 25.0 0.0 1.8 1 1 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.6 gi|530548464|ref|YP_008429005.1| - 9e-06 25.8 0.2 0.00017 21.6 0.2 2.3 1 1 0 1 1 1 1 Glycosyl transferase 4-like Glycos_transf_1 PF00534.20 gi|530548465|ref|YP_008429006.1| - 9e-23 80.7 0.0 1.4e-22 80.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|530548465|ref|YP_008429006.1| - 2.5e-16 60.3 0.0 3.9e-16 59.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|530548465|ref|YP_008429006.1| - 1.9e-10 41.0 0.0 2e-07 31.2 0.0 2.2 1 1 1 2 2 2 2 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|530548465|ref|YP_008429006.1| - 0.033 14.6 0.0 5.4 7.4 0.0 2.1 2 0 0 2 2 2 0 Glycosyl transferase 4-like domain Glycos_transf_1 PF00534.20 gi|530548466|ref|YP_008429007.1| - 2.9e-40 137.6 1.3 8.9e-40 136.0 0.5 2.0 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|530548466|ref|YP_008429007.1| - 2.3e-31 109.0 0.2 5.3e-30 104.6 0.1 2.1 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|530548466|ref|YP_008429007.1| - 6.1e-24 84.9 0.1 9.5e-24 84.3 0.1 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|530548466|ref|YP_008429007.1| - 9.6e-10 39.1 0.0 1.6e-09 38.4 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|530548466|ref|YP_008429007.1| - 5.2e-05 23.6 0.0 0.0001 22.6 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 DUF3880 PF12996.7 gi|530548466|ref|YP_008429007.1| - 0.15 12.2 0.0 0.31 11.1 0.0 1.5 1 0 0 1 1 1 0 DUF based on E. rectale Gene description (DUF3880) Hexapep PF00132.24 gi|530548467|ref|YP_008429008.1| - 1.3e-24 84.9 13.5 9.1e-09 34.7 0.7 4.1 3 1 1 4 4 4 4 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|530548467|ref|YP_008429008.1| - 2e-16 59.5 16.2 1e-09 38.0 5.0 4.1 4 0 0 4 4 4 3 Hexapeptide repeat of succinyl-transferase Desulfoferrod_N PF06397.12 gi|530548467|ref|YP_008429008.1| - 0.0051 16.4 1.8 0.012 15.2 0.2 2.5 2 0 0 2 2 2 1 Desulfoferrodoxin, N-terminal domain Nudix_N_2 PF14803.6 gi|530548467|ref|YP_008429008.1| - 0.049 13.6 2.5 0.77 9.7 0.1 2.4 2 0 0 2 2 2 0 Nudix N-terminal Acetyltransf_11 PF13720.6 gi|530548467|ref|YP_008429008.1| - 0.051 14.0 0.0 0.086 13.3 0.0 1.3 1 0 0 1 1 1 0 Udp N-acetylglucosamine O-acyltransferase; Domain 2 DUF951 PF06107.11 gi|530548467|ref|YP_008429008.1| - 0.081 12.9 1.0 0.18 11.8 0.2 2.0 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF951) DUF2613 PF11021.8 gi|530548467|ref|YP_008429008.1| - 0.14 12.3 2.1 0.24 11.5 2.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2613) zinc_ribbon_2 PF13240.6 gi|530548467|ref|YP_008429008.1| - 0.2 11.4 4.2 0.44 10.3 0.5 2.9 3 0 0 3 3 3 0 zinc-ribbon domain DegT_DnrJ_EryC1 PF01041.17 gi|530548469|ref|YP_008429010.1| - 8.2e-143 476.1 0.0 9.3e-143 475.9 0.0 1.0 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.21 gi|530548469|ref|YP_008429010.1| - 3.6e-09 36.3 0.1 6.2e-09 35.5 0.1 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_1_2 PF00155.21 gi|530548469|ref|YP_008429010.1| - 1e-06 28.2 0.2 2.3e-06 27.1 0.1 1.5 2 0 0 2 2 2 1 Aminotransferase class I and II Aminotran_5 PF00266.19 gi|530548469|ref|YP_008429010.1| - 8.6e-05 21.7 0.1 0.0002 20.4 0.0 1.5 2 0 0 2 2 2 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|530548469|ref|YP_008429010.1| - 0.004 15.7 0.1 0.0064 15.1 0.1 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Rotamase_2 PF13145.6 gi|530548469|ref|YP_008429010.1| - 0.12 13.2 1.0 0.3 11.9 0.6 1.9 2 0 0 2 2 2 0 PPIC-type PPIASE domain HEPN PF05168.14 gi|530548470|ref|YP_008429011.1| - 5.2e-33 113.7 1.3 6.1e-33 113.5 1.3 1.0 1 0 0 1 1 1 1 HEPN domain DUF4202 PF13875.6 gi|530548470|ref|YP_008429011.1| - 0.033 14.1 0.1 0.054 13.4 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4202) Cas_Cas02710 PF09670.10 gi|530548470|ref|YP_008429011.1| - 0.056 12.2 0.1 0.061 12.1 0.1 1.2 1 0 0 1 1 1 0 CRISPR-associated protein (Cas_Cas02710) NTP_transf_2 PF01909.23 gi|530548471|ref|YP_008429012.1| - 2.1e-13 50.3 0.1 3.6e-13 49.6 0.1 1.5 1 1 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|530548471|ref|YP_008429012.1| - 6.4e-08 32.6 0.0 8.9e-08 32.1 0.0 1.3 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DNA_pol_B_palm PF14792.6 gi|530548471|ref|YP_008429012.1| - 0.00012 22.3 0.0 0.00017 21.7 0.0 1.3 1 1 0 1 1 1 1 DNA polymerase beta palm GFO_IDH_MocA PF01408.22 gi|530548472|ref|YP_008429013.1| - 2.3e-30 105.9 2.0 3.2e-30 105.4 2.0 1.2 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold F420_oxidored PF03807.17 gi|530548472|ref|YP_008429013.1| - 1.2e-06 29.0 0.6 6e-06 26.8 0.3 2.2 2 1 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent GFO_IDH_MocA_C PF02894.17 gi|530548472|ref|YP_008429013.1| - 3.7e-06 26.9 0.0 7.8e-06 25.9 0.0 1.6 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain NAD_binding_3 PF03447.16 gi|530548472|ref|YP_008429013.1| - 3.9e-05 24.3 0.9 3.9e-05 24.3 0.9 1.5 2 0 0 2 2 2 1 Homoserine dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 gi|530548472|ref|YP_008429013.1| - 0.00022 21.4 0.7 0.0017 18.5 0.7 2.1 1 1 1 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase Shikimate_DH PF01488.20 gi|530548472|ref|YP_008429013.1| - 0.00047 20.2 3.0 0.0011 19.0 0.1 2.5 2 1 1 3 3 3 1 Shikimate / quinate 5-dehydrogenase OCD_Mu_crystall PF02423.15 gi|530548472|ref|YP_008429013.1| - 0.00095 18.2 0.1 0.012 14.6 0.4 2.0 2 0 0 2 2 2 1 Ornithine cyclodeaminase/mu-crystallin family CoA_binding PF02629.19 gi|530548472|ref|YP_008429013.1| - 0.015 16.0 1.0 0.027 15.1 0.4 1.8 1 1 0 1 1 1 0 CoA binding domain Semialdhyde_dh PF01118.24 gi|530548472|ref|YP_008429013.1| - 0.032 14.7 0.3 0.064 13.7 0.3 1.5 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain DUF234 PF03008.14 gi|530548473|ref|YP_008429014.1| - 3.8e-26 91.4 0.7 1.2e-25 89.8 0.7 1.9 1 0 0 1 1 1 1 Archaea bacterial proteins of unknown function ATPase_2 PF01637.18 gi|530548473|ref|YP_008429014.1| - 5.5e-15 55.9 3.4 5.5e-15 55.9 3.4 2.6 2 1 0 2 2 2 1 ATPase domain predominantly from Archaea AAA_14 PF13173.6 gi|530548473|ref|YP_008429014.1| - 2.9e-10 40.3 0.4 8.9e-10 38.7 0.4 1.8 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|530548473|ref|YP_008429014.1| - 2.1e-05 25.0 0.1 0.0002 21.8 0.1 2.2 1 1 1 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|530548473|ref|YP_008429014.1| - 2.9e-05 24.4 0.0 7.3e-05 23.1 0.0 1.7 1 0 0 1 1 1 1 AAA domain MarR PF01047.22 gi|530548473|ref|YP_008429014.1| - 0.019 14.9 0.3 0.14 12.1 0.0 2.3 2 0 0 2 2 2 0 MarR family DegS PF05384.11 gi|530548473|ref|YP_008429014.1| - 0.08 12.4 1.5 12 5.3 0.0 3.5 4 0 0 4 4 4 0 Sensor protein DegS DUF433 PF04255.14 gi|530548475|ref|YP_008429016.1| - 1e-22 79.7 0.0 1.2e-22 79.5 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF433) DUF1858 PF08984.11 gi|530548475|ref|YP_008429016.1| - 0.064 13.4 0.0 0.099 12.8 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1858) DUF5615 PF18480.1 gi|530548476|ref|YP_008429017.1| - 1.5e-17 63.1 0.0 1.6e-17 63.0 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF5615) PIN_10 PF18478.1 gi|530548476|ref|YP_008429017.1| - 2.8e-05 24.2 0.0 3.2e-05 24.1 0.0 1.1 1 0 0 1 1 1 1 PIN like domain Mut7-C PF01927.16 gi|530548476|ref|YP_008429017.1| - 0.012 15.7 0.0 0.012 15.7 0.0 1.1 1 0 0 1 1 1 0 Mut7-C RNAse domain DUF4776 PF16003.5 gi|530548476|ref|YP_008429017.1| - 0.034 13.2 0.0 0.034 13.2 0.0 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4776) Polysacc_synt PF01943.17 gi|530548477|ref|YP_008429018.1| - 6.6e-07 29.0 6.0 7.8e-07 28.8 6.0 1.0 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein MrpF_PhaF PF04066.13 gi|530548477|ref|YP_008429018.1| - 0.022 15.1 5.0 1.1 9.7 0.3 2.1 2 0 0 2 2 2 0 Multiple resistance and pH regulation protein F (MrpF / PhaF) Phage_holin_3_6 PF07332.11 gi|530548477|ref|YP_008429018.1| - 0.06 13.4 1.8 0.071 13.2 1.8 1.1 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III SecE PF00584.20 gi|530548477|ref|YP_008429018.1| - 0.15 12.0 0.6 0.15 12.0 0.6 2.0 2 0 0 2 2 2 0 SecE/Sec61-gamma subunits of protein translocation complex Polysacc_synt PF01943.17 gi|530548478|ref|YP_008429019.1| - 4.2e-07 29.6 28.6 4.2e-07 29.6 28.6 2.3 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.6 gi|530548478|ref|YP_008429019.1| - 3e-05 24.1 8.8 3e-05 24.1 8.8 4.8 2 1 3 5 5 5 2 Polysaccharide biosynthesis C-terminal domain DUF2206 PF09971.9 gi|530548479|ref|YP_008429020.1| - 4.9e-09 35.4 24.2 4.9e-09 35.4 24.2 2.3 2 1 0 2 2 2 1 Predicted membrane protein (DUF2206) FrhB_FdhB_C PF04432.13 gi|530548480|ref|YP_008429021.1| - 1.5e-34 119.1 0.4 2.8e-34 118.2 0.0 1.6 2 0 0 2 2 2 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus Fer4_7 PF12838.7 gi|530548480|ref|YP_008429021.1| - 2.1e-08 34.6 9.7 2.1e-08 34.6 9.7 1.7 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|530548480|ref|YP_008429021.1| - 2.8e-08 33.2 17.1 0.00029 20.5 4.0 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain FrhB_FdhB_N PF04422.13 gi|530548480|ref|YP_008429021.1| - 2.9e-08 33.7 0.0 4.7e-08 33.1 0.0 1.4 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4_21 PF14697.6 gi|530548480|ref|YP_008429021.1| - 3.9e-08 33.3 7.9 1e-07 31.9 7.9 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|530548480|ref|YP_008429021.1| - 3.7e-07 30.2 9.7 5.8e-07 29.6 8.3 1.9 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|530548480|ref|YP_008429021.1| - 1.9e-06 27.9 10.3 1.9e-06 27.9 10.3 2.0 2 1 1 3 3 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|530548480|ref|YP_008429021.1| - 4.4e-05 23.3 16.4 0.0039 17.2 2.4 2.8 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|530548480|ref|YP_008429021.1| - 0.00015 21.7 2.9 0.00015 21.7 2.9 2.7 3 0 0 3 3 2 1 4Fe-4S binding domain Fer4_8 PF13183.6 gi|530548480|ref|YP_008429021.1| - 0.0002 21.7 9.8 0.034 14.6 0.2 2.7 3 0 0 3 3 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|530548480|ref|YP_008429021.1| - 0.00021 22.1 12.9 0.013 16.4 1.2 2.6 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Pox_D5 PF03288.16 gi|530548480|ref|YP_008429021.1| - 0.0025 18.3 0.2 0.0046 17.4 0.2 1.4 1 0 0 1 1 1 1 Poxvirus D5 protein-like Fer4_22 PF17179.4 gi|530548480|ref|YP_008429021.1| - 0.039 14.8 3.4 4.4 8.2 0.4 2.6 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|530548480|ref|YP_008429021.1| - 0.042 14.4 18.9 0.15 12.6 3.7 2.8 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_13 PF13370.6 gi|530548480|ref|YP_008429021.1| - 0.097 13.2 10.7 1.2 9.7 2.2 2.4 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|530548480|ref|YP_008429021.1| - 0.43 11.4 6.5 2 9.2 0.6 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_3 PF12798.7 gi|530548480|ref|YP_008429021.1| - 1 10.5 19.3 0.44 11.6 5.0 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_17 PF13534.6 gi|530548480|ref|YP_008429021.1| - 2 9.0 17.5 0.57 10.8 2.4 2.6 2 1 2 4 4 3 0 4Fe-4S dicluster domain PS_pyruv_trans PF04230.13 gi|530548481|ref|YP_008429022.1| - 1.2e-16 61.5 2.9 1.6e-16 61.1 2.9 1.2 1 0 0 1 1 1 1 Polysaccharide pyruvyl transferase Glyco_trans_1_4 PF13692.6 gi|530548482|ref|YP_008429023.1| - 7.7e-21 74.9 0.1 1.3e-20 74.2 0.1 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 gi|530548482|ref|YP_008429023.1| - 3.6e-11 42.9 0.1 1.1e-10 41.3 0.1 1.8 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|530548482|ref|YP_008429023.1| - 5e-10 39.7 0.0 1.1e-09 38.6 0.0 1.5 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.6 gi|530548482|ref|YP_008429023.1| - 2.2e-07 31.2 0.0 4.5e-07 30.2 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 gi|530548482|ref|YP_008429023.1| - 3.2e-05 24.0 0.0 0.0041 17.2 0.0 2.4 2 0 0 2 2 2 2 Glycosyl transferase 4-like Glycos_transf_2 PF00535.26 gi|530548483|ref|YP_008429024.1| - 1.4e-20 73.8 0.0 2e-20 73.3 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|530548483|ref|YP_008429024.1| - 5.5e-09 36.2 0.0 7.4e-09 35.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|530548483|ref|YP_008429024.1| - 2.3e-05 24.8 0.0 7.6e-05 23.2 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferase family 2 DUF2157 PF09925.9 gi|530548483|ref|YP_008429024.1| - 0.028 14.2 2.7 0.05 13.4 2.7 1.4 1 0 0 1 1 1 0 Predicted membrane protein (DUF2157) Phage_holin_3_6 PF07332.11 gi|530548483|ref|YP_008429024.1| - 0.035 14.1 1.4 0.063 13.3 1.4 1.3 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III ABC2_membrane_3 PF12698.7 gi|530548483|ref|YP_008429024.1| - 0.05 12.7 3.3 0.2 10.7 3.2 1.8 2 0 0 2 2 2 0 ABC-2 family transporter protein Arg_repressor_C PF02863.18 gi|530548483|ref|YP_008429024.1| - 0.11 12.4 0.3 0.28 11.1 0.1 1.8 2 0 0 2 2 2 0 Arginine repressor, C-terminal domain ResB PF05140.14 gi|530548483|ref|YP_008429024.1| - 0.15 10.8 0.0 0.15 10.7 0.0 1.2 1 0 0 1 1 1 0 ResB-like family Glycos_transf_2 PF00535.26 gi|530548484|ref|YP_008429025.1| - 1.7e-27 96.3 0.1 2e-27 96.1 0.1 1.0 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|530548484|ref|YP_008429025.1| - 9.2e-05 22.4 0.0 0.00012 22.1 0.0 1.0 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|530548484|ref|YP_008429025.1| - 0.00014 22.3 0.0 0.00019 21.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_2 PF10111.9 gi|530548484|ref|YP_008429025.1| - 0.00065 19.2 0.0 0.00079 19.0 0.0 1.0 1 0 0 1 1 1 1 Glycosyltransferase like family 2 DUF374 PF04028.13 gi|530548484|ref|YP_008429025.1| - 0.014 14.9 0.1 0.024 14.2 0.1 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF374) Glyco_transf_21 PF13506.6 gi|530548484|ref|YP_008429025.1| - 0.11 12.0 0.0 0.14 11.7 0.0 1.2 1 0 0 1 1 1 0 Glycosyl transferase family 21 PIN_3 PF13470.6 gi|530548485|ref|YP_008429026.1| - 9e-18 65.1 0.2 1.2e-17 64.8 0.2 1.2 1 0 0 1 1 1 1 PIN domain PIN PF01850.21 gi|530548485|ref|YP_008429026.1| - 0.1 13.1 2.1 0.32 11.5 2.1 1.8 1 1 0 1 1 1 0 PIN domain DUF1682 PF07946.14 gi|530548486|ref|YP_008429027.1| - 0.03 13.5 3.7 0.035 13.3 3.7 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1682) DIT1_PvcA PF05141.12 gi|530548486|ref|YP_008429027.1| - 0.035 13.6 0.1 0.037 13.5 0.1 1.0 1 0 0 1 1 1 0 Pyoverdine/dityrosine biosynthesis protein WavE PF07507.11 gi|530548486|ref|YP_008429027.1| - 0.15 11.2 0.0 0.16 11.1 0.0 1.0 1 0 0 1 1 1 0 WavE lipopolysaccharide synthesis DUF4411 PF14367.6 gi|530548486|ref|YP_008429027.1| - 0.17 11.8 0.7 0.32 10.9 0.4 1.6 1 1 1 2 2 2 0 Domain of unknown function (DUF4411) DUF3420 PF11900.8 gi|530548486|ref|YP_008429027.1| - 0.23 11.6 2.9 3.4 7.9 0.3 2.6 1 1 1 2 2 2 0 Domain of unknown function (DUF3420) RHH_1 PF01402.21 gi|530548486|ref|YP_008429027.1| - 0.27 11.3 0.0 0.27 11.3 0.0 3.0 3 0 0 3 3 3 0 Ribbon-helix-helix protein, copG family LcrG PF07216.12 gi|530548486|ref|YP_008429027.1| - 0.6 10.1 4.8 2.2 8.3 0.2 2.2 1 1 1 2 2 2 0 LcrG protein NTP_transf_2 PF01909.23 gi|530548487|ref|YP_008429028.1| - 6.5e-15 55.2 0.3 8.3e-15 54.9 0.3 1.1 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|530548487|ref|YP_008429028.1| - 1.3e-08 34.8 0.1 1.7e-08 34.4 0.1 1.2 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DNA_pol_B_palm PF14792.6 gi|530548487|ref|YP_008429028.1| - 0.0079 16.4 0.1 0.0099 16.1 0.1 1.3 1 1 0 1 1 1 1 DNA polymerase beta palm RBD-FIP PF09457.10 gi|530548487|ref|YP_008429028.1| - 0.025 14.5 1.7 0.069 13.1 1.7 1.7 1 1 0 1 1 1 0 FIP domain EAP30 PF04157.16 gi|530548487|ref|YP_008429028.1| - 0.11 11.7 0.0 0.13 11.5 0.0 1.2 1 0 0 1 1 1 0 EAP30/Vps36 family DUF417 PF04224.12 gi|530548487|ref|YP_008429028.1| - 0.18 11.4 0.0 0.22 11.0 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function, DUF417 FixS PF03597.15 gi|530548488|ref|YP_008429029.1| - 0.17 11.6 0.0 0.19 11.5 0.0 1.1 1 0 0 1 1 1 0 Cytochrome oxidase maturation protein cbb3-type HGD-D PF06050.13 gi|530548489|ref|YP_008429030.1| - 0.039 13.7 0.1 0.044 13.6 0.1 1.1 1 0 0 1 1 1 0 2-hydroxyglutaryl-CoA dehydratase, D-component STT3 PF02516.14 gi|530548490|ref|YP_008429031.1| - 1.6e-11 43.9 37.0 9.6e-10 38.0 0.0 3.0 2 1 1 3 3 3 2 Oligosaccharyl transferase STT3 subunit PMT_2 PF13231.6 gi|530548490|ref|YP_008429031.1| - 0.0046 17.2 19.0 0.0046 17.2 19.0 3.5 3 0 0 3 3 3 1 Dolichyl-phosphate-mannose-protein mannosyltransferase DUF805 PF05656.14 gi|530548491|ref|YP_008429032.1| - 9.7 6.7 8.2 13 6.2 0.3 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF805) DUF58 PF01882.18 gi|530548492|ref|YP_008429033.1| - 1.1e-23 83.4 0.1 2e-23 82.5 0.1 1.5 1 0 0 1 1 1 1 Protein of unknown function DUF58 VWA_2 PF13519.6 gi|530548492|ref|YP_008429033.1| - 0.0002 22.0 0.0 0.00038 21.1 0.0 1.5 1 0 0 1 1 1 1 von Willebrand factor type A domain AAA_3 PF07726.11 gi|530548493|ref|YP_008429034.1| - 1e-63 213.0 0.1 1.5e-63 212.4 0.1 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_2 PF17863.1 gi|530548493|ref|YP_008429034.1| - 5.1e-19 67.9 1.0 9.1e-19 67.1 1.0 1.4 1 0 0 1 1 1 1 AAA lid domain AAA_5 PF07728.14 gi|530548493|ref|YP_008429034.1| - 1.6e-16 60.5 0.0 3.3e-16 59.6 0.0 1.5 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|530548493|ref|YP_008429034.1| - 1.1e-07 32.4 0.0 7.1e-07 29.7 0.0 2.1 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) MCM PF00493.23 gi|530548493|ref|YP_008429034.1| - 2.2e-06 27.0 0.0 4.1e-06 26.1 0.0 1.4 1 1 0 1 1 1 1 MCM P-loop domain Sigma54_activat PF00158.26 gi|530548493|ref|YP_008429034.1| - 0.00011 21.9 0.1 0.00084 19.1 0.1 2.1 1 1 0 1 1 1 1 Sigma-54 interaction domain RuvB_N PF05496.12 gi|530548493|ref|YP_008429034.1| - 0.00014 21.7 0.0 0.0014 18.4 0.0 2.2 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain Mg_chelatase PF01078.21 gi|530548493|ref|YP_008429034.1| - 0.0002 20.8 0.2 0.04 13.3 0.1 2.2 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_16 PF13191.6 gi|530548493|ref|YP_008429034.1| - 0.032 14.6 0.1 0.26 11.6 0.0 2.1 1 1 1 2 2 2 0 AAA ATPase domain AAA_30 PF13604.6 gi|530548493|ref|YP_008429034.1| - 0.16 11.7 0.0 0.99 9.1 0.0 2.0 2 0 0 2 2 2 0 AAA domain DUF4350 PF14258.6 gi|530548494|ref|YP_008429035.1| - 1.8e-07 31.5 0.0 3.4e-07 30.6 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4350) DUF2194 PF09960.9 gi|530548494|ref|YP_008429035.1| - 0.0047 15.3 0.0 0.0096 14.3 0.0 1.4 1 1 0 1 1 1 1 Uncharacterised protein conserved in bacteria (DUF2194) ABC_transp_aux PF09822.9 gi|530548494|ref|YP_008429035.1| - 0.068 12.6 0.0 0.11 11.9 0.0 1.4 1 0 0 1 1 1 0 ABC-type uncharacterized transport system Big_3_5 PF16640.5 gi|530548495|ref|YP_008429036.1| - 1e-09 38.4 1.0 0.00057 20.0 0.0 3.3 3 0 0 3 3 3 2 Bacterial Ig-like domain (group 3) DUF4129 PF13559.6 gi|530548495|ref|YP_008429036.1| - 1.7e-06 28.2 0.0 1.2e-05 25.5 0.0 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF4129) Big_1 PF02369.16 gi|530548495|ref|YP_008429036.1| - 0.019 15.0 0.0 0.055 13.5 0.0 1.8 1 0 0 1 1 1 0 Bacterial Ig-like domain (group 1) Phage_Arf PF17585.2 gi|530548495|ref|YP_008429036.1| - 0.17 11.8 1.2 1.3 9.0 0.5 2.5 2 0 0 2 2 2 0 Accessory recombination function protein YpmT PF17431.2 gi|530548496|ref|YP_008429037.1| - 0.0051 16.8 0.0 0.009 16.0 0.0 1.4 1 0 0 1 1 1 1 Uncharacterized YmpT-like DUF3040 PF11239.8 gi|530548496|ref|YP_008429037.1| - 0.01 16.1 0.0 0.017 15.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3040) DUF202 PF02656.15 gi|530548496|ref|YP_008429037.1| - 0.12 12.8 0.0 0.33 11.4 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF202) SirB PF04247.12 gi|530548497|ref|YP_008429038.1| - 0.014 15.5 2.7 0.017 15.2 2.7 1.1 1 0 0 1 1 1 0 Invasion gene expression up-regulator, SirB DUF1516 PF07457.11 gi|530548497|ref|YP_008429038.1| - 0.027 14.6 4.4 0.035 14.3 4.4 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1516) Ost5 PF05251.12 gi|530548497|ref|YP_008429038.1| - 0.053 13.8 0.8 0.053 13.8 0.8 1.7 1 1 1 2 2 2 0 Oligosaccharyltransferase subunit 5 SWIM PF04434.17 gi|530548498|ref|YP_008429039.1| - 3.2e-07 29.9 0.6 3.9e-06 26.4 0.1 2.4 2 0 0 2 2 2 1 SWIM zinc finger ScsC_N PF18312.1 gi|530548498|ref|YP_008429039.1| - 0.11 12.4 2.6 0.38 10.6 2.6 2.0 1 0 0 1 1 1 0 Copper resistance protein ScsC N-terminal domain SinI PF08671.10 gi|530548498|ref|YP_008429039.1| - 0.63 9.9 6.6 0.32 10.8 0.4 3.0 3 0 0 3 3 3 0 Anti-repressor SinI THB PF18362.1 gi|530548498|ref|YP_008429039.1| - 3.7 7.2 6.0 12 5.6 0.6 3.8 4 0 0 4 4 4 0 Tri-helix bundle domain ATPase_2 PF01637.18 gi|530548499|ref|YP_008429040.1| - 8.3e-13 48.8 0.4 2.4e-12 47.3 0.4 1.8 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_16 PF13191.6 gi|530548499|ref|YP_008429040.1| - 6.6e-11 42.9 0.3 2.6e-10 41.0 0.1 1.9 1 1 1 2 2 2 1 AAA ATPase domain AAA_14 PF13173.6 gi|530548499|ref|YP_008429040.1| - 1.1e-10 41.7 0.4 5.3e-05 23.3 0.1 2.8 1 1 1 2 2 2 2 AAA domain HTH_24 PF13412.6 gi|530548499|ref|YP_008429040.1| - 4.3e-06 26.2 0.6 2.3e-05 23.8 0.2 2.4 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 gi|530548499|ref|YP_008429040.1| - 2.3e-05 24.1 0.1 8e-05 22.4 0.1 1.9 1 0 0 1 1 1 1 IclR helix-turn-helix domain AAA_35 PF14516.6 gi|530548499|ref|YP_008429040.1| - 4.4e-05 22.5 0.2 0.00028 19.9 0.2 2.2 1 1 0 1 1 1 1 AAA-like domain HTH_5 PF01022.20 gi|530548499|ref|YP_008429040.1| - 5.2e-05 23.0 0.1 0.00015 21.5 0.1 1.8 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Mrr_cat PF04471.12 gi|530548499|ref|YP_008429040.1| - 6.9e-05 22.9 0.0 0.00014 21.9 0.0 1.6 1 0 0 1 1 1 1 Restriction endonuclease HTH_20 PF12840.7 gi|530548499|ref|YP_008429040.1| - 0.00021 21.2 0.0 0.0007 19.6 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.19 gi|530548499|ref|YP_008429040.1| - 0.00061 19.6 1.1 0.0014 18.4 0.0 2.2 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB Sigma70_r4_2 PF08281.12 gi|530548499|ref|YP_008429040.1| - 0.00075 19.1 0.6 0.0036 16.9 0.0 2.5 3 0 0 3 3 2 1 Sigma-70, region 4 AAA_22 PF13401.6 gi|530548499|ref|YP_008429040.1| - 0.00092 19.5 0.0 0.0036 17.6 0.0 2.0 1 1 0 1 1 1 1 AAA domain DUF4423 PF14394.6 gi|530548499|ref|YP_008429040.1| - 0.00095 18.9 0.0 0.0022 17.7 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) MarR_2 PF12802.7 gi|530548499|ref|YP_008429040.1| - 0.0015 18.4 0.0 0.0041 17.0 0.0 1.7 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|530548499|ref|YP_008429040.1| - 0.0039 17.1 0.1 0.013 15.4 0.1 1.9 1 0 0 1 1 1 1 MarR family Sigma70_r4 PF04545.16 gi|530548499|ref|YP_008429040.1| - 0.011 15.2 0.3 0.075 12.6 0.0 2.6 2 0 0 2 2 2 0 Sigma-70, region 4 TniB PF05621.11 gi|530548499|ref|YP_008429040.1| - 0.051 13.0 0.1 0.85 9.0 0.0 2.3 2 0 0 2 2 2 0 Bacterial TniB protein HTH_38 PF13936.6 gi|530548499|ref|YP_008429040.1| - 0.083 12.7 0.3 0.28 11.0 0.1 2.2 2 0 0 2 2 1 0 Helix-turn-helix domain HTH_45 PF14947.6 gi|530548499|ref|YP_008429040.1| - 0.1 12.6 0.6 0.5 10.4 0.0 2.5 3 0 0 3 3 3 0 Winged helix-turn-helix UPF0102 PF02021.17 gi|530548499|ref|YP_008429040.1| - 0.12 12.6 0.2 0.61 10.4 0.1 2.1 1 1 1 2 2 2 0 Uncharacterised protein family UPF0102 DUF234 PF03008.14 gi|530548500|ref|YP_008429041.1| - 9.1e-21 74.2 2.2 1.8e-20 73.2 0.2 2.5 2 0 0 2 2 2 1 Archaea bacterial proteins of unknown function ATPase_2 PF01637.18 gi|530548500|ref|YP_008429041.1| - 1.6e-19 70.8 6.7 1.9e-18 67.2 2.8 2.9 2 1 0 2 2 2 1 ATPase domain predominantly from Archaea AAA_14 PF13173.6 gi|530548500|ref|YP_008429041.1| - 3.4e-11 43.3 1.7 5.5e-11 42.6 0.1 2.2 2 1 1 3 3 3 1 AAA domain AAA_16 PF13191.6 gi|530548500|ref|YP_008429041.1| - 5.9e-08 33.3 0.6 9.4e-07 29.4 0.6 2.5 1 1 0 1 1 1 1 AAA ATPase domain DUF4143 PF13635.6 gi|530548500|ref|YP_008429041.1| - 4.1e-05 23.7 0.1 7.6e-05 22.9 0.1 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4143) AAA_22 PF13401.6 gi|530548500|ref|YP_008429041.1| - 7e-05 23.1 0.0 0.00026 21.3 0.0 1.9 2 0 0 2 2 2 1 AAA domain HTH_24 PF13412.6 gi|530548500|ref|YP_008429041.1| - 0.00013 21.5 0.1 0.0044 16.5 0.0 2.5 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding AHJR-like PF18743.1 gi|530548500|ref|YP_008429041.1| - 0.00029 20.4 0.1 0.0015 18.1 0.0 2.1 2 0 0 2 2 2 1 REase_AHJR-like UPF0102 PF02021.17 gi|530548500|ref|YP_008429041.1| - 0.0012 19.0 0.0 0.0029 17.8 0.0 1.6 1 0 0 1 1 1 1 Uncharacterised protein family UPF0102 Mrr_cat PF04471.12 gi|530548500|ref|YP_008429041.1| - 0.0023 18.0 0.0 0.0069 16.4 0.0 1.8 1 0 0 1 1 1 1 Restriction endonuclease Hormone_3 PF00159.18 gi|530548500|ref|YP_008429041.1| - 0.0096 16.0 0.0 0.022 14.8 0.0 1.6 1 0 0 1 1 1 1 Pancreatic hormone peptide DegS PF05384.11 gi|530548500|ref|YP_008429041.1| - 0.017 14.6 0.1 0.031 13.8 0.1 1.4 1 0 0 1 1 1 0 Sensor protein DegS TniB PF05621.11 gi|530548500|ref|YP_008429041.1| - 0.021 14.2 0.0 0.083 12.3 0.0 2.1 1 1 0 1 1 1 0 Bacterial TniB protein Hjc PF01870.18 gi|530548500|ref|YP_008429041.1| - 0.051 13.6 0.0 0.13 12.2 0.0 1.7 1 0 0 1 1 1 0 Archaeal holliday junction resolvase (hjc) Complex1_LYR_2 PF13233.6 gi|530548500|ref|YP_008429041.1| - 0.056 14.2 3.1 0.2 12.4 0.2 2.8 2 1 0 2 2 2 0 Complex1_LYR-like HTH_Tnp_Tc3_2 PF01498.18 gi|530548500|ref|YP_008429041.1| - 0.07 13.4 1.3 0.21 11.9 0.1 2.3 2 0 0 2 2 2 0 Transposase HTH_IclR PF09339.10 gi|530548500|ref|YP_008429041.1| - 0.086 12.7 0.0 0.25 11.2 0.0 1.8 2 0 0 2 2 2 0 IclR helix-turn-helix domain MarR PF01047.22 gi|530548500|ref|YP_008429041.1| - 0.086 12.8 0.0 0.28 11.1 0.0 1.9 1 0 0 1 1 1 0 MarR family AAA_14 PF13173.6 gi|530548501|ref|YP_008429042.1| - 4.6e-35 120.5 0.1 1e-34 119.4 0.1 1.6 1 0 0 1 1 1 1 AAA domain DUF4143 PF13635.6 gi|530548501|ref|YP_008429042.1| - 6.6e-14 52.1 0.0 1.2e-13 51.2 0.0 1.6 1 1 0 1 1 1 1 Domain of unknown function (DUF4143) AAA_22 PF13401.6 gi|530548501|ref|YP_008429042.1| - 1.5e-05 25.2 0.1 0.02 15.2 0.0 2.7 1 1 1 2 2 2 2 AAA domain ATPase_2 PF01637.18 gi|530548501|ref|YP_008429042.1| - 0.00032 20.7 1.5 0.14 12.0 0.0 2.8 1 1 1 2 2 2 2 ATPase domain predominantly from Archaea ATPase PF06745.13 gi|530548501|ref|YP_008429042.1| - 0.0066 15.8 0.1 0.049 13.0 0.1 2.3 1 1 0 1 1 1 1 KaiC Roc PF08477.13 gi|530548501|ref|YP_008429042.1| - 0.0088 16.3 0.3 3.8 7.8 0.0 2.4 2 0 0 2 2 2 2 Ras of Complex, Roc, domain of DAPkinase Mrr_cat PF04471.12 gi|530548501|ref|YP_008429042.1| - 0.011 15.8 0.0 0.12 12.3 0.0 2.4 2 0 0 2 2 2 0 Restriction endonuclease AAA_24 PF13479.6 gi|530548501|ref|YP_008429042.1| - 0.019 14.7 0.0 0.032 13.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|530548501|ref|YP_008429042.1| - 0.022 15.1 0.3 0.79 10.1 0.0 2.3 1 1 1 2 2 2 0 AAA ATPase domain NB-ARC PF00931.22 gi|530548501|ref|YP_008429042.1| - 0.034 13.3 0.2 5.6 6.1 0.1 2.3 2 0 0 2 2 2 0 NB-ARC domain DUF1616 PF07760.11 gi|530548502|ref|YP_008429043.1| - 2.1e-99 332.6 0.2 2.6e-99 332.3 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) MFS_1 PF07690.16 gi|530548502|ref|YP_008429043.1| - 0.003 16.6 4.7 0.0044 16.0 4.7 1.2 1 0 0 1 1 1 1 Major Facilitator Superfamily DUF5362 PF17319.2 gi|530548502|ref|YP_008429043.1| - 0.15 11.9 2.7 0.37 10.7 2.7 1.6 1 0 0 1 1 1 0 Family of unknown function (DUF5362) 7TMR-DISM_7TM PF07695.11 gi|530548502|ref|YP_008429043.1| - 0.25 11.2 10.0 0.31 10.9 7.6 2.0 2 0 0 2 2 2 0 7TM diverse intracellular signalling STT3 PF02516.14 gi|530548503|ref|YP_008429044.1| - 1.5e-08 34.1 40.3 1.5e-07 30.7 0.6 3.1 2 1 1 3 3 3 2 Oligosaccharyl transferase STT3 subunit Polysacc_synt PF01943.17 gi|530548504|ref|YP_008429045.1| - 2e-18 66.7 25.8 2e-18 66.7 25.8 2.7 2 1 1 3 3 3 1 Polysaccharide biosynthesis protein Polysacc_synt_3 PF13440.6 gi|530548504|ref|YP_008429045.1| - 3.8e-11 42.8 11.9 3.8e-11 42.8 11.9 2.6 2 2 0 2 2 2 1 Polysaccharide biosynthesis protein Glycos_transf_2 PF00535.26 gi|530548505|ref|YP_008429046.1| - 9.1e-35 120.0 0.0 1.2e-34 119.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|530548505|ref|YP_008429046.1| - 2.6e-14 53.7 0.0 3.2e-14 53.4 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|530548505|ref|YP_008429046.1| - 2.3e-08 33.9 0.8 1e-07 31.7 0.0 2.0 1 1 1 2 2 2 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|530548505|ref|YP_008429046.1| - 0.00072 20.0 0.0 0.0013 19.2 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_transf_21 PF13506.6 gi|530548505|ref|YP_008429046.1| - 0.0009 18.8 0.0 0.0015 18.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 21 GP44 PF17510.2 gi|530548505|ref|YP_008429046.1| - 0.025 14.9 0.1 0.34 11.2 0.0 2.2 2 0 0 2 2 2 0 Gene product 44 VWA_3 PF13768.6 gi|530548505|ref|YP_008429046.1| - 0.049 13.6 0.0 0.07 13.1 0.0 1.3 1 0 0 1 1 1 0 von Willebrand factor type A domain Glycos_transf_1 PF00534.20 gi|530548506|ref|YP_008429047.1| - 1.5e-33 115.7 0.7 1.1e-32 112.9 0.1 2.4 2 1 1 3 3 3 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|530548506|ref|YP_008429047.1| - 4.6e-21 75.7 0.0 9.6e-21 74.6 0.0 1.6 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|530548506|ref|YP_008429047.1| - 3e-15 56.6 0.0 5.1e-15 55.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.6 gi|530548506|ref|YP_008429047.1| - 5.5e-09 36.3 0.0 1.5e-08 34.9 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|530548506|ref|YP_008429047.1| - 1.8e-05 25.2 0.0 6.3e-05 23.5 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.6 gi|530548506|ref|YP_008429047.1| - 0.0004 20.4 0.2 0.001 19.1 0.1 1.6 1 1 0 1 1 1 1 Glycosyl transferase 4-like Glycos_transf_2 PF00535.26 gi|530548507|ref|YP_008429048.1| - 8.8e-09 35.4 0.0 9.2e-09 35.3 0.0 1.0 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|530548507|ref|YP_008429048.1| - 2.2e-07 31.0 0.0 2.3e-07 31.0 0.0 1.0 1 0 0 1 1 1 1 Glycosyltransferase like family 2 GNT-I PF03071.15 gi|530548507|ref|YP_008429048.1| - 0.0062 15.3 0.0 0.0063 15.3 0.0 1.0 1 0 0 1 1 1 1 GNT-I family Chitin_synth_2 PF03142.15 gi|530548507|ref|YP_008429048.1| - 0.11 11.0 0.0 0.11 11.0 0.0 1.0 1 0 0 1 1 1 0 Chitin synthase Glyco_trans_2_3 PF13632.6 gi|530548508|ref|YP_008429049.1| - 2.5e-05 24.3 0.0 3.6e-05 23.8 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_tranf_2_3 PF13641.6 gi|530548508|ref|YP_008429049.1| - 0.0012 18.8 0.0 0.0016 18.3 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_4 PF13439.6 gi|530548509|ref|YP_008429050.1| - 3e-09 37.1 0.0 3.8e-09 36.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|530548509|ref|YP_008429050.1| - 0.0076 16.7 0.0 0.025 15.0 0.0 1.7 1 1 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.6 gi|530548509|ref|YP_008429050.1| - 0.011 15.7 0.3 0.024 14.7 0.3 1.6 1 1 0 1 1 1 0 Glycosyl transferase 4-like Glycos_transf_1 PF00534.20 gi|530548510|ref|YP_008429051.1| - 1.6e-18 66.8 0.4 2.1e-18 66.4 0.4 1.1 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|530548510|ref|YP_008429051.1| - 1.5e-08 35.2 0.0 1.8e-08 34.9 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferases group 1 TrwB_AAD_bind PF10412.9 gi|530548511|ref|YP_008429052.1| - 0.0038 16.2 0.0 0.006 15.5 0.0 1.2 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain Hpr_kinase_C PF07475.12 gi|530548511|ref|YP_008429052.1| - 0.015 14.9 0.0 0.027 14.0 0.0 1.4 1 0 0 1 1 1 0 HPr Serine kinase C-terminal domain CbiA PF01656.23 gi|530548511|ref|YP_008429052.1| - 0.019 15.0 2.8 0.062 13.4 1.2 2.2 2 1 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_25 PF13481.6 gi|530548511|ref|YP_008429052.1| - 0.03 13.9 0.1 0.051 13.1 0.1 1.3 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|530548511|ref|YP_008429052.1| - 0.065 12.4 0.1 0.11 11.6 0.1 1.4 1 0 0 1 1 1 0 NB-ARC domain Zeta_toxin PF06414.12 gi|530548511|ref|YP_008429052.1| - 0.07 12.4 0.0 0.13 11.6 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin RsgA_GTPase PF03193.16 gi|530548511|ref|YP_008429052.1| - 0.1 12.5 0.2 0.25 11.3 0.2 1.6 1 0 0 1 1 1 0 RsgA GTPase AAA_33 PF13671.6 gi|530548511|ref|YP_008429052.1| - 0.12 12.6 0.0 0.22 11.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|530548511|ref|YP_008429052.1| - 0.13 12.6 0.0 0.25 11.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.6 gi|530548511|ref|YP_008429052.1| - 0.16 12.3 0.0 0.31 11.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain CBM_6 PF03422.15 gi|530548512|ref|YP_008429053.1| - 0.013 15.8 0.1 1.7 8.9 0.0 3.4 3 0 0 3 3 3 0 Carbohydrate binding module (family 6) OspE PF02471.17 gi|530548512|ref|YP_008429053.1| - 0.059 13.6 0.6 0.16 12.2 0.6 1.7 1 0 0 1 1 1 0 Borrelia outer surface protein E DUF3302 PF11742.8 gi|530548512|ref|YP_008429053.1| - 0.13 12.4 6.3 0.51 10.5 1.0 3.7 3 0 0 3 3 3 0 Protein of unknown function (DUF3302) DUF3368 PF11848.8 gi|530548513|ref|YP_008429054.1| - 2.3e-05 24.1 0.2 0.00014 21.6 0.1 2.3 2 0 0 2 2 2 1 Domain of unknown function (DUF3368) PPR PF01535.20 gi|530548513|ref|YP_008429054.1| - 0.024 14.9 0.2 1.3 9.4 0.1 2.5 2 0 0 2 2 2 0 PPR repeat UPF0175 PF03683.13 gi|530548514|ref|YP_008429055.1| - 4.1e-16 58.5 0.1 5e-16 58.2 0.1 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0175) ANT PF03374.14 gi|530548514|ref|YP_008429055.1| - 0.048 14.0 0.0 0.074 13.4 0.0 1.3 1 1 0 1 1 1 0 Phage antirepressor protein KilAC domain HTH_28 PF13518.6 gi|530548514|ref|YP_008429055.1| - 0.15 12.2 0.0 0.64 10.2 0.0 2.1 2 1 0 2 2 2 0 Helix-turn-helix domain IF2_N PF04760.15 gi|530548514|ref|YP_008429055.1| - 0.15 11.9 0.9 0.77 9.6 0.1 2.1 2 0 0 2 2 2 0 Translation initiation factor IF-2, N-terminal region DUF2283 PF10049.9 gi|530548516|ref|YP_008429057.1| - 1.1e-09 38.4 1.7 2.1e-08 34.2 1.7 2.3 1 1 0 1 1 1 1 Protein of unknown function (DUF2283) UPF0175 PF03683.13 gi|530548518|ref|YP_008429059.1| - 0.0016 18.1 0.1 0.0019 17.9 0.1 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0175) DUF1206 PF06724.11 gi|530548519|ref|YP_008429060.1| - 0.014 15.5 1.2 0.014 15.5 1.2 1.5 2 0 0 2 2 2 0 Domain of Unknown Function (DUF1206) Tetraspanin PF00335.20 gi|530548519|ref|YP_008429060.1| - 2.5 7.7 6.1 4.1 7.1 6.1 1.3 1 1 0 1 1 1 0 Tetraspanin family Resolvase PF00239.21 gi|530547458|ref|YP_008429061.1| - 5e-25 88.3 0.0 6.5e-25 87.9 0.0 1.1 1 0 0 1 1 1 1 Resolvase, N terminal domain HTH_17 PF12728.7 gi|530547458|ref|YP_008429061.1| - 3.3e-12 46.4 0.2 7.5e-12 45.3 0.2 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain MerR PF00376.23 gi|530547458|ref|YP_008429061.1| - 1.3e-09 37.6 0.1 1.3e-09 37.6 0.1 1.9 2 0 0 2 2 2 1 MerR family regulatory protein MerR_1 PF13411.6 gi|530547458|ref|YP_008429061.1| - 1.9e-09 37.5 0.1 4.4e-09 36.3 0.1 1.6 1 0 0 1 1 1 1 MerR HTH family regulatory protein HTH_23 PF13384.6 gi|530547458|ref|YP_008429061.1| - 0.0013 18.4 0.3 0.011 15.5 0.0 2.4 3 0 0 3 3 3 1 Homeodomain-like domain RE_AlwI PF09491.10 gi|530547458|ref|YP_008429061.1| - 0.0055 15.6 1.9 0.0076 15.1 1.9 1.2 1 0 0 1 1 1 1 AlwI restriction endonuclease HTH_28 PF13518.6 gi|530547458|ref|YP_008429061.1| - 0.025 14.7 0.0 0.055 13.6 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain DUF1323 PF07037.11 gi|530547458|ref|YP_008429061.1| - 0.053 13.9 0.9 0.54 10.6 0.1 2.6 2 1 1 3 3 3 0 Putative transcription regulator (DUF1323) GAD PF02938.14 gi|530547458|ref|YP_008429061.1| - 0.054 13.7 0.2 0.99 9.7 0.0 2.6 1 1 2 3 3 3 0 GAD domain HTH_29 PF13551.6 gi|530547458|ref|YP_008429061.1| - 0.059 13.4 0.0 0.16 12.0 0.0 1.8 1 1 0 1 1 1 0 Winged helix-turn helix CbiG_mid PF11761.8 gi|530547458|ref|YP_008429061.1| - 0.076 13.1 0.0 0.11 12.6 0.0 1.4 1 0 0 1 1 1 0 Cobalamin biosynthesis central region Glyco_trans_4_2 PF13477.6 gi|530547458|ref|YP_008429061.1| - 0.093 12.8 0.6 1.3 9.0 0.3 2.2 1 1 0 2 2 2 0 Glycosyl transferase 4-like Terminase_5 PF06056.12 gi|530547458|ref|YP_008429061.1| - 0.13 12.1 0.7 0.49 10.3 0.1 2.2 3 0 0 3 3 3 0 Putative ATPase subunit of terminase (gpP-like) OrfB_Zn_ribbon PF07282.11 gi|530548520|ref|YP_008429062.1| - 3e-16 59.1 0.0 5.7e-16 58.2 0.0 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|530548520|ref|YP_008429062.1| - 0.00028 21.1 6.5 0.00055 20.2 0.0 2.9 3 1 0 3 3 3 1 Probable transposase Prok-RING_1 PF14446.6 gi|530548520|ref|YP_008429062.1| - 0.0054 16.6 0.2 0.0085 16.0 0.2 1.3 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 DNA_ligase_ZBD PF03119.16 gi|530548520|ref|YP_008429062.1| - 0.012 15.7 0.8 0.022 14.8 0.8 1.4 1 0 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain TackOD1 PF18551.1 gi|530548520|ref|YP_008429062.1| - 0.035 13.8 0.4 0.12 12.1 0.2 1.9 2 0 0 2 2 2 0 Thaumarchaeal output domain 1 DZR PF12773.7 gi|530548520|ref|YP_008429062.1| - 0.061 13.4 0.6 0.1 12.6 0.6 1.2 1 0 0 1 1 1 0 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|530548520|ref|YP_008429062.1| - 0.15 11.8 3.6 0.27 11.0 3.6 1.4 1 0 0 1 1 1 0 zinc-ribbon domain Rad50_zn_hook PF04423.14 gi|530548520|ref|YP_008429062.1| - 1.4 8.8 6.1 1.4 8.8 0.1 3.4 4 0 0 4 4 4 0 Rad50 zinc hook motif zf-ribbon_3 PF13248.6 gi|530548520|ref|YP_008429062.1| - 1.4 8.4 3.4 5.4 6.6 3.4 1.9 1 1 0 1 1 1 0 zinc-ribbon domain NPCBM_assoc PF10633.9 gi|530548522|ref|YP_008429064.1| - 3.3e-34 117.0 8.6 7.8e-18 64.5 0.2 6.1 5 1 0 5 5 4 4 NPCBM-associated, NEW3 domain of alpha-galactosidase CarboxypepD_reg PF13620.6 gi|530548522|ref|YP_008429064.1| - 2.3e-12 47.0 8.6 2.4e-11 43.8 0.1 4.8 4 1 0 4 4 3 1 Carboxypeptidase regulatory-like domain FixG_C PF11614.8 gi|530548522|ref|YP_008429064.1| - 9.2e-12 45.2 2.5 0.12 12.6 0.0 5.5 4 1 2 6 6 6 4 IG-like fold at C-terminal of FixG, putative oxidoreductase DUF11 PF01345.18 gi|530548522|ref|YP_008429064.1| - 1.2e-11 44.8 9.1 0.0024 18.1 0.8 6.7 5 2 0 6 6 6 2 Domain of unknown function DUF11 CARDB PF07705.11 gi|530548522|ref|YP_008429064.1| - 6.7e-08 32.7 10.3 0.00015 22.0 0.9 5.0 3 2 3 6 6 6 2 CARDB MG2 PF01835.19 gi|530548522|ref|YP_008429064.1| - 6.4e-06 26.5 0.1 1.6 9.3 0.0 5.7 2 2 3 5 5 5 1 MG2 domain DUF4625 PF15418.6 gi|530548522|ref|YP_008429064.1| - 2.5e-05 24.6 0.1 0.032 14.5 0.0 3.5 3 1 0 3 3 3 1 Domain of unknown function (DUF4625) DUF4832 PF16116.5 gi|530548522|ref|YP_008429064.1| - 4.3e-05 23.5 2.0 0.014 15.3 0.1 3.9 4 1 1 5 5 5 1 Domain of unknown function (DUF4832) Transglut_N PF00868.20 gi|530548522|ref|YP_008429064.1| - 4.9e-05 23.7 0.3 1.5 9.2 0.0 3.9 3 0 0 3 3 3 1 Transglutaminase family Alpha_adaptinC2 PF02883.20 gi|530548522|ref|YP_008429064.1| - 6.5e-05 23.2 0.1 0.0048 17.2 0.0 3.6 3 1 0 3 3 3 1 Adaptin C-terminal domain fn3_5 PF06280.12 gi|530548522|ref|YP_008429064.1| - 0.0003 21.4 4.3 14 6.4 0.1 5.1 4 1 0 4 4 4 0 Fn3-like domain PEGA PF08308.11 gi|530548522|ref|YP_008429064.1| - 0.001 18.9 1.6 0.021 14.7 0.1 3.6 3 0 0 3 3 2 1 PEGA domain DUF1416 PF07210.12 gi|530548522|ref|YP_008429064.1| - 0.0013 18.6 0.0 0.0052 16.6 0.0 2.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1416) CarbopepD_reg_2 PF13715.6 gi|530548522|ref|YP_008429064.1| - 0.0015 18.5 0.2 0.0015 18.5 0.2 3.8 4 0 0 4 4 4 1 CarboxypepD_reg-like domain Cupredoxin_1 PF13473.6 gi|530548522|ref|YP_008429064.1| - 0.006 16.7 3.5 9.4 6.4 0.0 5.7 6 2 1 7 7 6 0 Cupredoxin-like domain fn3_6 PF17766.1 gi|530548522|ref|YP_008429064.1| - 0.0084 16.3 0.3 0.82 9.9 0.1 3.7 3 0 0 3 3 3 1 Fibronectin type-III domain He_PIG PF05345.12 gi|530548522|ref|YP_008429064.1| - 0.02 15.1 9.3 8.5 6.7 0.1 5.8 6 1 1 7 7 5 0 Putative Ig domain Arrestin_C PF02752.22 gi|530548522|ref|YP_008429064.1| - 0.052 14.0 0.3 0.49 10.9 0.0 2.8 2 1 0 2 2 2 0 Arrestin (or S-antigen), C-terminal domain Alph_Pro_TM PF09608.10 gi|530548522|ref|YP_008429064.1| - 0.068 13.0 0.3 0.2 11.4 0.1 1.9 2 0 0 2 2 2 0 Putative transmembrane protein (Alph_Pro_TM) Fn3-like PF14310.6 gi|530548522|ref|YP_008429064.1| - 0.083 13.0 0.8 26 5.0 0.0 4.4 4 0 0 4 4 3 0 Fibronectin type III-like domain T2SSF PF00482.23 gi|530548522|ref|YP_008429064.1| - 0.086 12.8 0.0 0.2 11.6 0.0 1.5 1 0 0 1 1 1 0 Type II secretion system (T2SS), protein F A2M PF00207.22 gi|530548522|ref|YP_008429064.1| - 0.088 12.7 0.1 26 4.8 0.0 4.0 4 0 0 4 4 3 0 Alpha-2-macroglobulin family DUF4469 PF14734.6 gi|530548522|ref|YP_008429064.1| - 0.095 12.9 2.1 8.8 6.6 0.0 4.2 5 0 0 5 5 4 0 Domain of unknown function (DUF4469) with IG-like fold DUF3324 PF11797.8 gi|530548522|ref|YP_008429064.1| - 0.097 12.6 1.3 1.9 8.4 0.0 3.1 3 0 0 3 3 3 0 Protein of unknown function C-terminal (DUF3324) DM13 PF10517.9 gi|530548522|ref|YP_008429064.1| - 0.11 13.1 0.1 2.5 8.7 0.1 3.1 3 0 0 3 3 3 0 Electron transfer DM13 I-set PF07679.16 gi|530548522|ref|YP_008429064.1| - 0.11 12.6 1.2 85 3.3 0.1 4.7 6 1 1 7 7 4 0 Immunoglobulin I-set domain DUF4232 PF14016.6 gi|530548522|ref|YP_008429064.1| - 0.14 12.3 0.2 33 4.6 0.0 3.8 2 1 1 4 4 4 0 Protein of unknown function (DUF4232) BACON PF13004.7 gi|530548522|ref|YP_008429064.1| - 1.6 8.8 14.0 0.14 12.2 0.7 5.2 6 1 0 6 6 6 0 Putative binding domain, N-terminal Big_3 PF07523.12 gi|530548522|ref|YP_008429064.1| - 6.1 7.2 12.0 5.6 7.4 0.1 5.3 6 0 0 6 6 5 0 Bacterial Ig-like domain (group 3) ABC2_membrane_2 PF12679.7 gi|530548523|ref|YP_008429065.1| - 1.7e-49 168.7 8.4 2.1e-49 168.4 8.4 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|530548523|ref|YP_008429065.1| - 2.9e-08 33.9 12.5 2.9e-08 33.9 12.5 2.2 2 1 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|530548523|ref|YP_008429065.1| - 1.2e-06 27.8 23.0 1.2e-06 27.8 23.0 1.9 2 1 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|530548523|ref|YP_008429065.1| - 7.3e-06 25.7 14.6 7.3e-06 25.7 14.6 2.8 3 1 0 3 3 3 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|530548523|ref|YP_008429065.1| - 7.3e-05 22.3 18.6 7.3e-05 22.3 18.6 2.0 2 1 0 2 2 2 1 ABC-2 type transporter CcmB PF03379.13 gi|530548523|ref|YP_008429065.1| - 0.0044 16.5 7.5 0.0084 15.6 7.5 1.4 1 0 0 1 1 1 1 CcmB protein DUF373 PF04123.13 gi|530548523|ref|YP_008429065.1| - 2.2 7.6 15.7 15 4.9 15.7 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF373) ABC_tran PF00005.27 gi|530548524|ref|YP_008429066.1| - 2.7e-32 112.1 0.0 4e-32 111.6 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|530548524|ref|YP_008429066.1| - 1.5e-14 54.5 1.4 3.3e-11 43.6 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|530548524|ref|YP_008429066.1| - 9.5e-09 35.9 0.5 4e-08 33.9 0.1 2.2 3 0 0 3 3 3 1 Domain of unknown function (DUF4162) Rad17 PF03215.15 gi|530548524|ref|YP_008429066.1| - 0.0047 16.9 0.0 0.011 15.7 0.0 1.5 1 1 1 2 2 2 1 Rad17 P-loop domain AAA PF00004.29 gi|530548524|ref|YP_008429066.1| - 0.017 15.5 1.3 0.31 11.5 1.2 2.4 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) SRP54 PF00448.22 gi|530548524|ref|YP_008429066.1| - 0.037 13.7 0.1 0.089 12.4 0.1 1.6 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_15 PF13175.6 gi|530548524|ref|YP_008429066.1| - 0.052 13.2 0.0 4.2 7.0 0.0 2.2 1 1 1 2 2 2 0 AAA ATPase domain AAA_23 PF13476.6 gi|530548524|ref|YP_008429066.1| - 0.059 13.9 0.1 0.059 13.9 0.1 2.0 1 1 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.23 gi|530548524|ref|YP_008429066.1| - 0.068 13.3 0.1 0.22 11.6 0.0 2.1 2 1 0 2 2 2 0 50S ribosome-binding GTPase SbcCD_C PF13558.6 gi|530548524|ref|YP_008429066.1| - 0.11 12.7 0.0 0.24 11.6 0.0 1.6 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_29 PF13555.6 gi|530548524|ref|YP_008429066.1| - 0.12 12.2 0.1 0.21 11.3 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain HTH_24 PF13412.6 gi|530548525|ref|YP_008429067.1| - 1.6e-05 24.4 0.2 3.1e-05 23.4 0.2 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|530548525|ref|YP_008429067.1| - 6.7e-05 22.7 0.0 0.00014 21.7 0.0 1.5 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|530548525|ref|YP_008429067.1| - 0.0001 22.1 0.3 0.00022 21.0 0.3 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|530548525|ref|YP_008429067.1| - 0.0013 18.6 0.1 0.0026 17.6 0.1 1.4 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|530548525|ref|YP_008429067.1| - 0.0024 17.6 0.0 0.0046 16.7 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain DUF4897 PF16238.5 gi|530548525|ref|YP_008429067.1| - 0.0037 17.1 1.0 0.011 15.6 0.1 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF4897) NusG_II PF07009.11 gi|530548525|ref|YP_008429067.1| - 0.0091 16.2 0.3 3.4 7.9 0.1 2.5 2 0 0 2 2 2 1 NusG domain II TFIIE_alpha PF02002.17 gi|530548525|ref|YP_008429067.1| - 0.022 14.6 0.2 0.047 13.6 0.2 1.5 1 0 0 1 1 1 0 TFIIE alpha subunit Phage_holin_5_2 PF16079.5 gi|530548525|ref|YP_008429067.1| - 0.061 13.7 0.3 0.31 11.4 0.0 2.2 2 0 0 2 2 2 0 Phage holin family Hol44, in holin superfamily V Trm5_N PF18093.1 gi|530548525|ref|YP_008429067.1| - 0.063 13.2 2.0 5.8 6.9 0.4 3.2 3 0 0 3 3 3 0 tRNA methyltransferase 5 N-terminal domain Fe_dep_repress PF01325.19 gi|530548525|ref|YP_008429067.1| - 0.064 13.5 0.0 0.21 11.8 0.0 1.9 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_27 PF13463.6 gi|530548525|ref|YP_008429067.1| - 0.12 12.9 0.1 0.28 11.7 0.1 1.7 1 0 0 1 1 1 0 Winged helix DNA-binding domain Lyx_isomer PF07385.12 gi|530548526|ref|YP_008429068.1| - 0.009 15.3 0.1 0.015 14.6 0.1 1.3 1 0 0 1 1 1 1 D-lyxose isomerase TPR_12 PF13424.6 gi|530548526|ref|YP_008429068.1| - 0.023 15.0 7.2 4.4 7.7 0.2 3.7 2 2 1 3 3 3 0 Tetratricopeptide repeat NAGidase PF07555.13 gi|530548526|ref|YP_008429068.1| - 0.074 12.4 0.5 0.3 10.4 0.1 2.1 1 1 1 2 2 2 0 beta-N-acetylglucosaminidase HEPN PF05168.14 gi|530548526|ref|YP_008429068.1| - 0.14 12.2 7.7 0.23 11.6 0.4 3.1 1 1 1 3 3 3 0 HEPN domain TPR_10 PF13374.6 gi|530548526|ref|YP_008429068.1| - 0.6 10.0 4.9 7.8 6.5 0.1 3.7 3 1 1 4 4 4 0 Tetratricopeptide repeat DUF771 PF05595.11 gi|530548527|ref|YP_008429069.1| - 0.018 15.0 0.2 0.02 14.9 0.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF771) DUF4870 PF09685.10 gi|530548529|ref|YP_008429071.1| - 4.9 7.3 13.6 0.52 10.4 0.2 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF4870) DUF4855 PF16147.5 gi|530548535|ref|YP_008429077.1| - 9.8e-09 34.7 2.5 4.5e-08 32.6 2.5 2.1 1 1 0 1 1 1 1 Domain of unknown function (DUF4855) Macro PF01661.21 gi|530548536|ref|YP_008429078.1| - 2.3e-35 121.2 0.2 3e-35 120.8 0.2 1.2 1 0 0 1 1 1 1 Macro domain SseB_C PF14581.6 gi|530548536|ref|YP_008429078.1| - 0.096 12.8 0.2 0.4 10.8 0.0 2.0 2 1 0 2 2 2 0 SseB protein C-terminal domain FAM25 PF15825.5 gi|530548536|ref|YP_008429078.1| - 2.8 8.4 7.1 17 5.8 0.2 3.0 3 0 0 3 3 3 0 FAM25 family Amidohydro_1 PF01979.20 gi|530548537|ref|YP_008429079.1| - 6.2e-84 282.2 0.3 7.2e-84 282.0 0.3 1.0 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|530548537|ref|YP_008429079.1| - 8.4e-22 78.3 0.1 3.2e-15 56.6 0.0 2.2 2 0 0 2 2 2 2 Amidohydrolase family A_deaminase PF00962.22 gi|530548537|ref|YP_008429079.1| - 0.0022 17.4 0.0 0.0039 16.6 0.0 1.3 1 0 0 1 1 1 1 Adenosine/AMP deaminase HTH_24 PF13412.6 gi|530548538|ref|YP_008429080.1| - 2.3e-06 27.1 0.1 2.3e-06 27.1 0.1 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|530548538|ref|YP_008429080.1| - 0.00083 19.1 0.1 0.0016 18.2 0.1 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_IclR PF09339.10 gi|530548538|ref|YP_008429080.1| - 0.003 17.3 0.0 0.0048 16.7 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|530548538|ref|YP_008429080.1| - 0.0033 17.3 0.0 0.0058 16.5 0.0 1.3 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|530548538|ref|YP_008429080.1| - 0.035 14.0 0.1 0.27 11.1 0.0 2.3 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 gi|530548538|ref|YP_008429080.1| - 0.088 12.7 0.0 0.19 11.6 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|530548538|ref|YP_008429080.1| - 0.1 12.7 0.0 0.18 11.9 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HrcA_DNA-bdg PF03444.15 gi|530548538|ref|YP_008429080.1| - 0.13 12.0 0.0 0.38 10.4 0.0 1.8 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_36 PF13730.6 gi|530548538|ref|YP_008429080.1| - 0.15 12.1 0.1 0.35 10.8 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain SPASM PF13186.6 gi|530548539|ref|YP_008429081.1| - 5.8e-06 26.7 0.1 1.4e-05 25.5 0.1 1.6 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain PAC2 PF09754.9 gi|530548540|ref|YP_008429082.1| - 6.1e-42 144.0 0.0 7e-42 143.8 0.0 1.0 1 0 0 1 1 1 1 PAC2 family EMP24_GP25L PF01105.24 gi|530548540|ref|YP_008429082.1| - 0.034 14.1 0.1 0.048 13.6 0.1 1.1 1 0 0 1 1 1 0 emp24/gp25L/p24 family/GOLD DUF473 PF04322.12 gi|530548541|ref|YP_008429083.1| - 9e-36 122.3 0.4 1e-35 122.1 0.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF473) FIST_C PF10442.9 gi|530548541|ref|YP_008429083.1| - 0.12 12.4 0.0 0.12 12.3 0.0 1.2 1 0 0 1 1 1 0 FIST C domain NucS PF01939.16 gi|530548542|ref|YP_008429084.1| - 3.5e-86 288.3 0.0 4e-86 288.1 0.0 1.0 1 0 0 1 1 1 1 Endonuclease NucS MazE_antitoxin PF04014.18 gi|530548542|ref|YP_008429084.1| - 0.0012 18.7 4.7 0.043 13.8 0.1 3.3 2 1 1 3 3 3 1 Antidote-toxin recognition MazE, bacterial antitoxin DUF4263 PF14082.6 gi|530548542|ref|YP_008429084.1| - 0.0085 16.4 0.1 0.043 14.1 0.1 2.0 1 1 0 1 1 1 1 Domain of unknown function (DUF4263) HSDR_N PF04313.14 gi|530548542|ref|YP_008429084.1| - 0.03 14.3 0.0 0.043 13.8 0.0 1.3 1 0 0 1 1 1 0 Type I restriction enzyme R protein N terminus (HSDR_N) Cas_Csa5 PF09702.10 gi|530548542|ref|YP_008429084.1| - 0.033 14.5 0.0 0.062 13.5 0.0 1.5 1 0 0 1 1 1 0 CRISPR-associated protein (Cas_Csa5) Rad51 PF08423.11 gi|530548543|ref|YP_008429085.1| - 2.5e-85 285.8 0.3 7.9e-70 235.0 0.0 2.2 2 0 0 2 2 2 2 Rad51 Intein_splicing PF14890.6 gi|530548543|ref|YP_008429085.1| - 2.3e-20 72.9 0.1 2.3e-20 72.9 0.1 2.1 3 0 0 3 3 3 1 Intein splicing domain LAGLIDADG_3 PF14528.6 gi|530548543|ref|YP_008429085.1| - 2.8e-15 56.4 0.7 6.5e-13 48.8 0.2 2.9 2 0 0 2 2 2 1 LAGLIDADG-like domain HHH_5 PF14520.6 gi|530548543|ref|YP_008429085.1| - 1.8e-11 44.4 1.2 1.8e-11 44.4 1.2 2.5 2 0 0 2 2 1 1 Helix-hairpin-helix domain RecA PF00154.21 gi|530548543|ref|YP_008429085.1| - 1.2e-06 28.2 0.1 0.027 14.0 0.0 2.3 2 0 0 2 2 2 2 recA bacterial DNA recombination protein Hom_end PF05204.14 gi|530548543|ref|YP_008429085.1| - 1.6e-06 28.3 1.0 4.1e-06 26.9 0.0 2.2 3 0 0 3 3 2 1 Homing endonuclease Cdd1 PF11731.8 gi|530548543|ref|YP_008429085.1| - 1.6e-05 25.0 0.0 3.8e-05 23.8 0.0 1.6 1 0 0 1 1 1 1 Pathogenicity locus ATPase PF06745.13 gi|530548543|ref|YP_008429085.1| - 1.9e-05 24.1 0.1 0.093 12.1 0.1 2.5 2 0 0 2 2 2 2 KaiC HHH PF00633.23 gi|530548543|ref|YP_008429085.1| - 2.3e-05 24.0 1.3 0.0096 15.7 0.0 2.9 2 0 0 2 2 2 1 Helix-hairpin-helix motif SPOR PF05036.13 gi|530548543|ref|YP_008429085.1| - 0.0003 21.1 0.0 0.056 13.8 0.0 2.8 2 0 0 2 2 2 1 Sporulation related domain HHH_2 PF12826.7 gi|530548543|ref|YP_008429085.1| - 0.0016 18.5 0.1 0.0016 18.5 0.1 2.8 3 0 0 3 3 3 1 Helix-hairpin-helix motif DNA_pol_lambd_f PF10391.9 gi|530548543|ref|YP_008429085.1| - 0.0026 17.6 0.0 0.012 15.5 0.0 2.2 1 1 1 2 2 2 1 Fingers domain of DNA polymerase lambda IMS_HHH PF11798.8 gi|530548543|ref|YP_008429085.1| - 0.0082 16.4 0.0 0.042 14.2 0.0 2.3 2 0 0 2 2 1 1 IMS family HHH motif PT-HINT PF07591.11 gi|530548543|ref|YP_008429085.1| - 0.0083 16.4 0.5 0.022 15.0 0.0 2.0 2 0 0 2 2 1 1 Pretoxin HINT domain HHH_8 PF14716.6 gi|530548543|ref|YP_008429085.1| - 0.011 16.1 2.6 0.14 12.5 0.1 3.6 3 1 0 3 3 3 0 Helix-hairpin-helix domain CPSase_L_D3 PF02787.19 gi|530548543|ref|YP_008429085.1| - 0.021 15.1 0.2 0.095 13.1 0.2 2.1 1 0 0 1 1 1 0 Carbamoyl-phosphate synthetase large chain, oligomerisation domain HHH_3 PF12836.7 gi|530548543|ref|YP_008429085.1| - 0.19 12.0 2.2 28 5.0 0.1 3.9 4 0 0 4 4 4 0 Helix-hairpin-helix motif Surp PF01805.20 gi|530548546|ref|YP_008429088.1| - 0.11 12.5 0.1 0.14 12.2 0.1 1.2 1 0 0 1 1 1 0 Surp module YbjN PF10722.9 gi|530548547|ref|YP_008429089.1| - 0.012 15.7 0.0 0.019 15.0 0.0 1.5 1 0 0 1 1 1 0 Putative bacterial sensory transduction regulator PIN_4 PF13638.6 gi|530548548|ref|YP_008429090.1| - 7.8e-07 29.4 1.2 1.1e-06 28.9 1.2 1.2 1 0 0 1 1 1 1 PIN domain Cas_Cas02710 PF09670.10 gi|530548549|ref|YP_008429091.1| - 1.2e-06 27.6 0.0 1.4e-06 27.4 0.0 1.0 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Cas02710) Cas_DxTHG PF09455.10 gi|530548549|ref|YP_008429091.1| - 0.0031 17.2 0.1 0.0036 17.0 0.1 1.1 1 0 0 1 1 1 1 CRISPR-associated (Cas) DxTHG family DUF2334 PF10096.9 gi|530548549|ref|YP_008429091.1| - 0.054 13.1 0.0 0.081 12.6 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2334) Cas_APE2256 PF09651.10 gi|530548549|ref|YP_008429091.1| - 0.084 12.8 0.0 0.16 11.8 0.0 1.4 1 0 0 1 1 1 0 CRISPR-associated protein (Cas_APE2256) HAD_2 PF13419.6 gi|530548549|ref|YP_008429091.1| - 0.12 12.4 0.0 0.14 12.2 0.0 1.2 1 0 0 1 1 1 0 Haloacid dehalogenase-like hydrolase DUF2284 PF10050.9 gi|530548550|ref|YP_008429092.1| - 3.8e-34 117.8 0.9 4.7e-34 117.5 0.9 1.0 1 0 0 1 1 1 1 Predicted metal-binding protein (DUF2284) DUF1065 PF06358.11 gi|530548550|ref|YP_008429092.1| - 0.089 12.7 0.1 0.41 10.6 0.0 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF1065) adh_short_C2 PF13561.6 gi|530548551|ref|YP_008429093.1| - 1.5e-60 204.6 1.9 1.9e-60 204.4 1.9 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|530548551|ref|YP_008429093.1| - 2.7e-58 196.7 2.7 3.2e-58 196.4 2.7 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|530548551|ref|YP_008429093.1| - 5.7e-16 59.0 0.4 1.1e-15 58.0 0.3 1.5 1 1 1 2 2 2 1 KR domain Epimerase PF01370.21 gi|530548551|ref|YP_008429093.1| - 7.9e-06 25.5 0.8 2.7e-05 23.7 0.8 1.9 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family PALP PF00291.25 gi|530548551|ref|YP_008429093.1| - 0.00028 20.4 0.4 0.00041 19.9 0.3 1.3 1 1 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme THF_DHG_CYH_C PF02882.19 gi|530548551|ref|YP_008429093.1| - 0.00091 18.6 0.2 0.0022 17.4 0.2 1.8 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain 2-Hacid_dh_C PF02826.19 gi|530548551|ref|YP_008429093.1| - 0.0015 17.9 2.9 0.0037 16.6 0.3 2.6 3 0 0 3 3 3 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Polysacc_synt_2 PF02719.15 gi|530548551|ref|YP_008429093.1| - 0.0096 15.1 0.2 0.012 14.8 0.2 1.2 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein SepSecS PF05889.13 gi|530548551|ref|YP_008429093.1| - 0.012 14.3 0.2 0.019 13.6 0.2 1.2 1 0 0 1 1 1 0 O-phosphoseryl-tRNA(Sec) selenium transferase, SepSecS NAD_binding_10 PF13460.6 gi|530548551|ref|YP_008429093.1| - 0.027 14.3 0.1 0.05 13.5 0.1 1.6 2 0 0 2 2 2 0 NAD(P)H-binding TPP_enzyme_C PF02775.21 gi|530548551|ref|YP_008429093.1| - 0.075 12.8 0.8 0.19 11.5 0.2 1.9 1 1 1 2 2 2 0 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain GDP_Man_Dehyd PF16363.5 gi|530548551|ref|YP_008429093.1| - 0.11 11.8 0.0 0.17 11.2 0.0 1.2 1 0 0 1 1 1 0 GDP-mannose 4,6 dehydratase Wax2_C PF12076.8 gi|530548551|ref|YP_008429093.1| - 0.15 11.8 0.1 0.23 11.1 0.1 1.3 1 0 0 1 1 1 0 WAX2 C-terminal domain LAB_N PF07578.11 gi|530548552|ref|YP_008429094.1| - 1.7e-05 24.8 0.9 1.9e-05 24.7 0.9 1.0 1 0 0 1 1 1 1 Lipid A Biosynthesis N-terminal domain PQ-loop PF04193.14 gi|530548552|ref|YP_008429094.1| - 6.3e-05 22.7 1.1 9.1e-05 22.1 1.0 1.3 1 1 0 1 1 1 1 PQ loop repeat P5-ATPase PF12409.8 gi|530548552|ref|YP_008429094.1| - 0.014 15.5 0.9 0.016 15.3 0.5 1.3 1 1 0 1 1 1 0 P5-type ATPase cation transporter BDV_M PF16520.5 gi|530548552|ref|YP_008429094.1| - 0.044 14.1 0.1 0.05 14.0 0.1 1.2 1 0 0 1 1 1 0 ssRNA-binding matrix protein of Bornaviridae TPR_5 PF12688.7 gi|530548553|ref|YP_008429095.1| - 0.00029 21.1 0.3 0.17 12.1 0.0 2.2 1 1 1 2 2 2 2 Tetratrico peptide repeat TPR_12 PF13424.6 gi|530548553|ref|YP_008429095.1| - 0.00082 19.6 0.2 6.5 7.1 0.0 3.8 1 1 3 4 4 4 1 Tetratricopeptide repeat TPR_19 PF14559.6 gi|530548553|ref|YP_008429095.1| - 0.0012 19.3 0.1 0.56 10.8 0.0 2.6 2 0 0 2 2 2 1 Tetratricopeptide repeat PPR PF01535.20 gi|530548553|ref|YP_008429095.1| - 0.0014 18.8 0.0 1 9.7 0.0 3.3 3 0 0 3 3 3 1 PPR repeat TPR_14 PF13428.6 gi|530548553|ref|YP_008429095.1| - 0.0015 19.2 0.3 3.1 8.9 0.0 3.5 3 1 1 4 4 3 1 Tetratricopeptide repeat SgrR_N PF12793.7 gi|530548553|ref|YP_008429095.1| - 0.0063 16.7 0.2 2 8.6 0.1 2.6 2 1 1 3 3 3 1 Sugar transport-related sRNA regulator N-term Type_III_YscG PF09477.10 gi|530548553|ref|YP_008429095.1| - 0.0069 16.4 0.2 1.3 9.1 0.0 2.7 1 1 2 3 3 3 1 Bacterial type II secretion system chaperone protein (type_III_yscG) TPR_1 PF00515.28 gi|530548553|ref|YP_008429095.1| - 0.0071 16.1 0.2 1.2 9.0 0.0 3.3 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_2 PF07719.17 gi|530548553|ref|YP_008429095.1| - 0.011 15.7 0.2 19 5.7 0.0 3.7 4 0 0 4 4 4 0 Tetratricopeptide repeat ATP13 PF12921.7 gi|530548553|ref|YP_008429095.1| - 0.018 14.9 0.1 7.8 6.4 0.0 2.9 2 1 1 3 3 3 0 Mitochondrial ATPase expression ANAPC3 PF12895.7 gi|530548553|ref|YP_008429095.1| - 0.018 15.2 0.0 3.6 7.9 0.0 2.7 1 1 2 3 3 3 0 Anaphase-promoting complex, cyclosome, subunit 3 TPR_20 PF14561.6 gi|530548553|ref|YP_008429095.1| - 0.023 15.0 0.7 2.3 8.6 0.1 2.5 2 1 0 2 2 2 0 Tetratricopeptide repeat YqaH PF17448.2 gi|530548553|ref|YP_008429095.1| - 0.031 14.6 0.2 0.28 11.5 0.0 2.4 1 1 0 2 2 2 0 Uncharacterized YqaH-like RPN7 PF10602.9 gi|530548553|ref|YP_008429095.1| - 0.038 13.7 0.1 2.9 7.6 0.1 2.7 1 1 0 1 1 1 0 26S proteasome subunit RPN7 PPR_2 PF13041.6 gi|530548553|ref|YP_008429095.1| - 0.041 14.1 0.0 2.1 8.6 0.0 2.8 3 0 0 3 3 3 0 PPR repeat family LysE PF01810.18 gi|530548554|ref|YP_008429096.1| - 0.0031 17.0 15.1 0.0031 17.0 15.1 1.7 2 0 0 2 2 2 1 LysE type translocator DUF4220 PF13968.6 gi|530548554|ref|YP_008429096.1| - 1.2 8.5 4.9 0.44 9.9 0.4 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF4220) DUF373 PF04123.13 gi|530548554|ref|YP_008429096.1| - 1.6 8.1 26.3 0.56 9.6 19.3 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF373) Thioredoxin_2 PF13098.6 gi|530548555|ref|YP_008429097.1| - 0.00073 20.0 0.5 0.0031 17.9 0.5 1.9 1 1 0 1 1 1 1 Thioredoxin-like domain Glutaredoxin PF00462.24 gi|530548555|ref|YP_008429097.1| - 0.0018 18.4 0.0 0.0045 17.2 0.0 1.7 1 1 0 1 1 1 1 Glutaredoxin Thioredoxin_4 PF13462.6 gi|530548555|ref|YP_008429097.1| - 0.044 13.9 0.1 0.098 12.8 0.1 1.5 1 0 0 1 1 1 0 Thioredoxin Mycoplasma_p37 PF06646.11 gi|530548555|ref|YP_008429097.1| - 0.051 12.8 0.0 0.064 12.5 0.0 1.1 1 0 0 1 1 1 0 High affinity transport system protein p37 Thioredoxin PF00085.20 gi|530548555|ref|YP_008429097.1| - 0.063 13.3 0.0 0.11 12.6 0.0 1.4 1 1 0 1 1 1 0 Thioredoxin Thioredoxin_3 PF13192.6 gi|530548555|ref|YP_008429097.1| - 0.14 12.2 0.0 0.33 11.0 0.0 1.6 1 0 0 1 1 1 0 Thioredoxin domain CBS PF00571.28 gi|530548556|ref|YP_008429098.1| - 1.2e-17 64.0 4.9 9.7e-10 38.7 0.3 2.3 2 0 0 2 2 2 2 CBS domain Na_H_Exchanger PF00999.21 gi|530548557|ref|YP_008429099.1| - 3.1e-50 171.1 39.9 4.2e-50 170.6 39.9 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family DUF308 PF03729.13 gi|530548557|ref|YP_008429099.1| - 0.0063 16.8 9.8 0.0063 16.8 9.8 3.5 4 0 0 4 4 4 1 Short repeat of unknown function (DUF308) CBP_BcsG PF11658.8 gi|530548557|ref|YP_008429099.1| - 1.6 7.0 2.8 6.9 4.9 0.1 2.1 2 0 0 2 2 2 0 Cellulose biosynthesis protein BcsG PepSY_TM PF03929.16 gi|530548557|ref|YP_008429099.1| - 5.2 6.6 9.0 19 4.8 9.0 2.1 1 1 0 1 1 1 0 PepSY-associated TM region SepZ PF06066.11 gi|530548557|ref|YP_008429099.1| - 7 6.9 7.4 4.9 7.4 0.5 2.8 2 1 0 2 2 2 0 SepZ HTH_24 PF13412.6 gi|530548558|ref|YP_008429100.1| - 2.8e-19 68.4 1.0 6.1e-19 67.3 1.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|530548558|ref|YP_008429100.1| - 7.8e-18 64.0 0.4 1.2e-17 63.4 0.4 1.3 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain AsnC_trans_reg PF01037.21 gi|530548558|ref|YP_008429100.1| - 5.7e-15 55.1 0.1 8.5e-15 54.5 0.1 1.3 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_IclR PF09339.10 gi|530548558|ref|YP_008429100.1| - 2e-07 30.7 0.0 3.8e-07 29.8 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_20 PF12840.7 gi|530548558|ref|YP_008429100.1| - 3e-07 30.4 0.0 5.9e-07 29.4 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4 PF04545.16 gi|530548558|ref|YP_008429100.1| - 4.6e-07 29.3 0.5 8.4e-07 28.4 0.5 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_23 PF13384.6 gi|530548558|ref|YP_008429100.1| - 8.3e-07 28.6 0.1 1.5e-06 27.8 0.1 1.3 1 0 0 1 1 1 1 Homeodomain-like domain Sigma70_r4_2 PF08281.12 gi|530548558|ref|YP_008429100.1| - 9e-07 28.5 0.3 2.6e-06 27.0 0.1 1.8 2 0 0 2 2 2 1 Sigma-70, region 4 MarR PF01047.22 gi|530548558|ref|YP_008429100.1| - 3.4e-06 26.9 0.0 1.8e-05 24.5 0.0 2.0 2 0 0 2 2 2 1 MarR family HTH_28 PF13518.6 gi|530548558|ref|YP_008429100.1| - 4.9e-06 26.6 0.0 8.2e-06 25.9 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|530548558|ref|YP_008429100.1| - 1.3e-05 25.0 0.0 2.1e-05 24.3 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|530548558|ref|YP_008429100.1| - 1.9e-05 24.4 0.1 7.7e-05 22.5 0.0 2.0 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.12 gi|530548558|ref|YP_008429100.1| - 2.2e-05 24.3 0.4 0.00018 21.4 0.1 2.2 2 0 0 2 2 2 1 HTH domain MarR_2 PF12802.7 gi|530548558|ref|YP_008429100.1| - 4.3e-05 23.3 0.1 0.00012 21.9 0.1 1.7 2 0 0 2 2 2 1 MarR family CENP-B_N PF04218.13 gi|530548558|ref|YP_008429100.1| - 0.00016 21.2 0.1 0.00038 20.0 0.0 1.7 2 0 0 2 2 1 1 CENP-B N-terminal DNA-binding domain HTH_38 PF13936.6 gi|530548558|ref|YP_008429100.1| - 0.00033 20.4 0.1 0.0006 19.5 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_DeoR PF08220.12 gi|530548558|ref|YP_008429100.1| - 0.00042 20.0 0.3 0.0018 18.0 0.1 2.0 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain RPA_C PF08784.11 gi|530548558|ref|YP_008429100.1| - 0.0014 19.3 0.1 0.067 13.9 0.0 2.2 2 0 0 2 2 2 1 Replication protein A C terminal Fe_dep_repress PF01325.19 gi|530548558|ref|YP_008429100.1| - 0.0018 18.5 0.0 0.0045 17.2 0.0 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain DUF742 PF05331.11 gi|530548558|ref|YP_008429100.1| - 0.0022 17.8 0.0 0.005 16.6 0.0 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF742) HTH_Mga PF08280.11 gi|530548558|ref|YP_008429100.1| - 0.0024 17.8 0.1 0.024 14.7 0.0 2.1 2 0 0 2 2 2 1 M protein trans-acting positive regulator (MGA) HTH domain Methyltransf_33 PF10017.9 gi|530548558|ref|YP_008429100.1| - 0.0028 16.8 0.0 0.0031 16.7 0.0 1.1 1 0 0 1 1 1 1 Histidine-specific methyltransferase, SAM-dependent HTH_47 PF16221.5 gi|530548558|ref|YP_008429100.1| - 0.0034 16.9 0.1 0.027 14.0 0.0 2.2 2 1 1 3 3 3 1 winged helix-turn-helix HTH_Crp_2 PF13545.6 gi|530548558|ref|YP_008429100.1| - 0.0036 17.2 0.1 0.027 14.4 0.1 2.1 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain Rrf2 PF02082.20 gi|530548558|ref|YP_008429100.1| - 0.0044 17.3 0.0 0.019 15.3 0.0 1.9 2 0 0 2 2 2 1 Transcriptional regulator HxlR PF01638.17 gi|530548558|ref|YP_008429100.1| - 0.0052 16.6 0.0 0.012 15.4 0.0 1.7 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_Tnp_ISL3 PF13542.6 gi|530548558|ref|YP_008429100.1| - 0.0065 15.9 0.0 0.011 15.2 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 HTH_CodY PF08222.11 gi|530548558|ref|YP_008429100.1| - 0.013 15.0 0.3 0.045 13.3 0.1 1.9 2 0 0 2 2 2 0 CodY helix-turn-helix domain RuvB_C PF05491.13 gi|530548558|ref|YP_008429100.1| - 0.018 14.9 0.1 0.085 12.7 0.0 2.1 2 1 0 2 2 1 0 RuvB C-terminal winged helix domain HTH_psq PF05225.16 gi|530548558|ref|YP_008429100.1| - 0.02 14.6 0.0 0.041 13.6 0.0 1.4 1 0 0 1 1 1 0 helix-turn-helix, Psq domain DUF1804 PF08822.11 gi|530548558|ref|YP_008429100.1| - 0.022 14.7 0.0 4.7 7.2 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1804) HTH_27 PF13463.6 gi|530548558|ref|YP_008429100.1| - 0.024 15.1 0.1 0.049 14.1 0.1 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_7 PF02796.15 gi|530548558|ref|YP_008429100.1| - 0.036 14.1 0.1 0.41 10.8 0.0 2.3 1 1 1 2 2 2 0 Helix-turn-helix domain of resolvase HTH_36 PF13730.6 gi|530548558|ref|YP_008429100.1| - 0.049 13.6 0.1 0.2 11.7 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain GerE PF00196.19 gi|530548558|ref|YP_008429100.1| - 0.05 13.1 0.0 0.092 12.3 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family HTH_29 PF13551.6 gi|530548558|ref|YP_008429100.1| - 0.065 13.3 0.0 0.1 12.6 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn helix HTH_40 PF14493.6 gi|530548558|ref|YP_008429100.1| - 0.078 13.4 0.0 0.14 12.7 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain FeoC PF09012.10 gi|530548558|ref|YP_008429100.1| - 0.085 12.9 0.0 0.18 11.9 0.0 1.5 1 0 0 1 1 1 0 FeoC like transcriptional regulator HTH_26 PF13443.6 gi|530548558|ref|YP_008429100.1| - 0.13 12.7 0.2 0.32 11.4 0.0 1.8 2 0 0 2 2 1 0 Cro/C1-type HTH DNA-binding domain HTH_12 PF08461.10 gi|530548558|ref|YP_008429100.1| - 0.13 12.2 0.9 0.41 10.6 0.9 1.8 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain Aminotran_3 PF00202.21 gi|530548559|ref|YP_008429101.1| - 7.9e-113 377.2 0.0 9.5e-113 376.9 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Methyltransf_33 PF10017.9 gi|530548559|ref|YP_008429101.1| - 0.0055 15.9 0.0 0.011 14.9 0.0 1.4 1 0 0 1 1 1 1 Histidine-specific methyltransferase, SAM-dependent MFS_1 PF07690.16 gi|530548560|ref|YP_008429102.1| - 1.5e-15 57.0 17.8 1.8e-15 56.7 17.8 1.1 1 0 0 1 1 1 1 Major Facilitator Superfamily MFS_2 PF13347.6 gi|530548560|ref|YP_008429102.1| - 5.3e-06 25.3 7.6 5.3e-06 25.3 7.6 1.8 1 1 1 2 2 2 1 MFS/sugar transport protein MFS_1_like PF12832.7 gi|530548560|ref|YP_008429102.1| - 8.1e-06 24.9 9.4 2e-05 23.7 9.3 1.6 1 1 0 1 1 1 1 MFS_1 like family Nuc_H_symport PF03825.16 gi|530548560|ref|YP_008429102.1| - 3.4e-05 23.0 7.6 4.1e-05 22.7 7.6 1.1 1 0 0 1 1 1 1 Nucleoside H+ symporter MFS_1 PF07690.16 gi|530548561|ref|YP_008429103.1| - 3.6e-06 26.2 35.3 0.00023 20.2 13.7 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily AAA_12 PF13087.6 gi|530548562|ref|YP_008429104.1| - 3.9e-60 202.9 0.0 6.1e-60 202.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_11 PF13086.6 gi|530548562|ref|YP_008429104.1| - 3.3e-55 187.7 0.1 5.4e-55 187.0 0.1 1.4 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|530548562|ref|YP_008429104.1| - 1.8e-12 47.4 0.1 1.5e-09 37.9 0.0 3.2 2 2 1 3 3 3 1 AAA domain Viral_helicase1 PF01443.18 gi|530548562|ref|YP_008429104.1| - 1.5e-07 31.5 0.3 0.062 13.0 0.0 3.4 4 0 0 4 4 4 2 Viral (Superfamily 1) RNA helicase AAA_19 PF13245.6 gi|530548562|ref|YP_008429104.1| - 1.7e-07 31.7 0.0 2.3e-06 28.0 0.0 2.7 2 1 0 2 2 2 1 AAA domain UvrD-helicase PF00580.21 gi|530548562|ref|YP_008429104.1| - 0.00013 21.7 1.0 0.00083 19.0 1.0 2.3 1 1 0 1 1 1 1 UvrD/REP helicase N-terminal domain AAA_22 PF13401.6 gi|530548562|ref|YP_008429104.1| - 0.00035 20.9 0.9 0.0059 16.9 0.0 3.2 4 0 0 4 4 4 1 AAA domain PIF1 PF05970.14 gi|530548562|ref|YP_008429104.1| - 0.00063 19.0 0.0 0.011 14.9 0.0 2.4 2 0 0 2 2 2 1 PIF1-like helicase T2SSE PF00437.20 gi|530548562|ref|YP_008429104.1| - 0.0022 17.1 0.0 0.0042 16.2 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein ResIII PF04851.15 gi|530548562|ref|YP_008429104.1| - 0.0022 18.0 0.1 0.012 15.6 0.1 2.1 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_RecD PF05127.14 gi|530548562|ref|YP_008429104.1| - 0.0032 17.3 0.8 0.24 11.2 0.0 2.5 2 0 0 2 2 2 1 Helicase DEAD PF00270.29 gi|530548562|ref|YP_008429104.1| - 0.011 15.5 0.0 0.026 14.3 0.0 1.7 1 1 0 1 1 1 0 DEAD/DEAH box helicase PhoH PF02562.16 gi|530548562|ref|YP_008429104.1| - 0.015 14.8 0.0 1.9 7.9 0.0 2.5 2 0 0 2 2 2 0 PhoH-like protein AAA_16 PF13191.6 gi|530548562|ref|YP_008429104.1| - 0.021 15.2 0.3 0.2 12.0 0.1 2.5 1 1 0 2 2 2 0 AAA ATPase domain UvrD_C_2 PF13538.6 gi|530548562|ref|YP_008429104.1| - 0.042 13.7 0.0 0.11 12.3 0.0 1.7 1 0 0 1 1 1 0 UvrD-like helicase C-terminal domain DUF2121 PF09894.9 gi|530548562|ref|YP_008429104.1| - 0.062 12.8 0.4 1.8 8.1 0.1 2.9 3 0 0 3 3 3 0 Uncharacterized protein conserved in archaea (DUF2121) AAA PF00004.29 gi|530548562|ref|YP_008429104.1| - 0.074 13.5 0.0 0.23 11.9 0.0 1.9 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Hydrolase_6 PF13344.6 gi|530548563|ref|YP_008429105.1| - 1e-34 118.6 0.0 1.2e-33 115.2 0.0 2.3 2 1 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|530548563|ref|YP_008429105.1| - 4.6e-19 68.3 0.0 1.6e-18 66.6 0.0 1.9 2 0 0 2 2 2 1 HAD-hyrolase-like Hydrolase PF00702.26 gi|530548563|ref|YP_008429105.1| - 2.1e-07 31.4 0.3 2.6e-05 24.6 0.1 3.5 2 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|530548563|ref|YP_008429105.1| - 2.1e-05 24.7 7.5 0.012 15.7 0.1 3.5 3 1 1 4 4 4 2 Haloacid dehalogenase-like hydrolase PGP_phosphatase PF09419.10 gi|530548563|ref|YP_008429105.1| - 5e-05 23.0 0.0 0.00059 19.5 0.0 2.7 4 0 0 4 4 4 1 Mitochondrial PGP phosphatase DUF3293 PF11697.8 gi|530548563|ref|YP_008429105.1| - 0.028 14.9 0.1 0.17 12.4 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3293) Hydrolase_3 PF08282.12 gi|530548563|ref|YP_008429105.1| - 0.029 14.1 0.0 0.051 13.3 0.0 1.4 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase SpoU_sub_bind PF08032.12 gi|530548563|ref|YP_008429105.1| - 0.047 14.0 0.3 6.4 7.1 0.0 2.9 4 0 0 4 4 4 0 RNA 2'-O ribose methyltransferase substrate binding Peptidase_M73 PF12389.8 gi|530548564|ref|YP_008429106.1| - 1.2e-08 35.1 2.6 1.7e-08 34.5 2.6 1.5 1 1 0 1 1 1 1 Camelysin metallo-endopeptidase CusF_Ec PF11604.8 gi|530548564|ref|YP_008429106.1| - 0.0059 16.6 0.0 0.012 15.6 0.0 1.4 1 0 0 1 1 1 1 Copper binding periplasmic protein CusF DUF1344 PF07076.11 gi|530548564|ref|YP_008429106.1| - 0.065 13.1 0.1 0.14 12.1 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1344) DUF3221 PF11518.8 gi|530548564|ref|YP_008429106.1| - 0.098 13.0 0.1 0.57 10.6 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3221) Glycos_transf_2 PF00535.26 gi|530548565|ref|YP_008429107.1| - 1.6e-26 93.1 0.0 2.6e-26 92.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|530548565|ref|YP_008429107.1| - 3.4e-07 30.4 0.0 5.5e-07 29.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 DUF373 PF04123.13 gi|530548565|ref|YP_008429107.1| - 0.0054 16.2 10.3 0.0054 16.2 10.3 1.6 2 0 0 2 2 2 1 Domain of unknown function (DUF373) DUF5362 PF17319.2 gi|530548565|ref|YP_008429107.1| - 0.01 15.6 4.5 0.01 15.6 4.5 2.3 2 1 0 2 2 2 0 Family of unknown function (DUF5362) ATP1G1_PLM_MAT8 PF02038.16 gi|530548565|ref|YP_008429107.1| - 0.021 14.3 7.0 2.1 7.9 2.6 2.6 2 0 0 2 2 2 0 ATP1G1/PLM/MAT8 family Glyco_transf_7N PF13733.6 gi|530548565|ref|YP_008429107.1| - 0.032 13.9 0.0 0.066 12.8 0.0 1.4 1 0 0 1 1 1 0 N-terminal region of glycosyl transferase group 7 DUF2371 PF10177.9 gi|530548565|ref|YP_008429107.1| - 0.037 14.2 0.8 0.08 13.1 0.8 1.5 1 1 0 1 1 1 0 Uncharacterised conserved protein (DUF2371) Sensor PF13796.6 gi|530548565|ref|YP_008429107.1| - 0.13 12.3 0.2 0.13 12.3 0.2 2.3 2 1 0 2 2 2 0 Putative sensor DUF981 PF06168.11 gi|530548565|ref|YP_008429107.1| - 0.97 9.3 10.6 4 7.3 10.6 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF981) DUF308 PF03729.13 gi|530548565|ref|YP_008429107.1| - 1.6 9.1 18.1 0.11 12.8 3.6 2.5 2 1 0 2 2 2 0 Short repeat of unknown function (DUF308) Tetraspanin PF00335.20 gi|530548565|ref|YP_008429107.1| - 4.3 7.0 13.2 0.32 10.7 2.7 2.1 2 0 0 2 2 2 0 Tetraspanin family DUF3185 PF11381.8 gi|530548565|ref|YP_008429107.1| - 5.2 7.1 14.4 1.9 8.5 0.2 3.3 3 0 0 3 3 3 0 Protein of unknown function (DUF3185) Glycos_transf_1 PF00534.20 gi|530548566|ref|YP_008429108.1| - 5.6e-38 130.2 0.2 9.5e-38 129.4 0.2 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|530548566|ref|YP_008429108.1| - 5.2e-29 101.4 0.1 8.3e-29 100.7 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|530548566|ref|YP_008429108.1| - 5.3e-20 72.1 0.0 1.1e-19 71.0 0.0 1.5 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_2 PF13477.6 gi|530548566|ref|YP_008429108.1| - 1.8e-11 44.2 0.2 8e-11 42.1 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferase 4-like Glyco_trans_4_4 PF13579.6 gi|530548566|ref|YP_008429108.1| - 1e-10 42.3 0.0 2.2e-10 41.2 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|530548566|ref|YP_008429108.1| - 4.2e-10 39.9 0.0 2.6e-09 37.3 0.0 2.3 3 0 0 3 3 3 1 Glycosyl transferases group 1 PMT_2 PF13231.6 gi|530548567|ref|YP_008429109.1| - 2.6e-07 31.0 9.5 2.6e-07 31.0 9.5 2.7 3 1 0 3 3 3 1 Dolichyl-phosphate-mannose-protein mannosyltransferase DUF2880 PF11082.8 gi|530548568|ref|YP_008429110.1| - 0.038 14.3 0.0 0.038 14.3 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2880) DUF3368 PF11848.8 gi|530548570|ref|YP_008429112.1| - 4.7e-06 26.3 0.2 2.1e-05 24.2 0.1 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF3368) PIN_9 PF18477.1 gi|530548570|ref|YP_008429112.1| - 0.00029 21.1 0.2 0.00053 20.3 0.2 1.4 1 0 0 1 1 1 1 PIN like domain DsrH PF04077.12 gi|530548570|ref|YP_008429112.1| - 0.076 13.2 0.0 0.11 12.6 0.0 1.3 1 0 0 1 1 1 0 DsrH like protein Stk19 PF10494.9 gi|530548570|ref|YP_008429112.1| - 0.1 12.3 0.1 0.11 12.2 0.1 1.2 1 0 0 1 1 1 0 Serine-threonine protein kinase 19 UPF0175 PF03683.13 gi|530548571|ref|YP_008429113.1| - 0.004 16.8 1.0 0.006 16.3 1.0 1.4 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0175) WbqC PF08889.11 gi|530548571|ref|YP_008429113.1| - 0.059 13.3 0.2 0.07 13.0 0.2 1.0 1 0 0 1 1 1 0 WbqC-like protein family DUF3644 PF12358.8 gi|530548572|ref|YP_008429114.1| - 0.026 15.0 0.1 0.031 14.8 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3644) DUF3164 PF11363.8 gi|530548573|ref|YP_008429115.1| - 0.0086 15.7 0.0 0.013 15.1 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF3164) Carb_kinase PF01256.17 gi|530548576|ref|YP_008429118.1| - 6.4e-50 169.9 0.0 9.3e-50 169.4 0.0 1.2 1 0 0 1 1 1 1 Carbohydrate kinase YjeF_N PF03853.15 gi|530548576|ref|YP_008429118.1| - 3.3e-33 115.0 0.0 1.2e-32 113.1 0.0 1.9 2 0 0 2 2 2 1 YjeF-related protein N-terminus Phos_pyr_kin PF08543.12 gi|530548576|ref|YP_008429118.1| - 0.0083 15.5 0.0 0.015 14.7 0.0 1.4 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase HK PF02110.15 gi|530548576|ref|YP_008429118.1| - 0.011 15.1 0.0 0.016 14.6 0.0 1.3 1 0 0 1 1 1 0 Hydroxyethylthiazole kinase family HTH_5 PF01022.20 gi|530548577|ref|YP_008429119.1| - 1.7e-15 56.6 0.1 3.2e-15 55.7 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|530548577|ref|YP_008429119.1| - 6.4e-12 45.4 0.0 2.5e-11 43.5 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|530548577|ref|YP_008429119.1| - 4.6e-07 29.3 0.0 7.8e-07 28.6 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|530548577|ref|YP_008429119.1| - 1.5e-06 28.0 0.1 5.8e-06 26.1 0.0 1.9 3 0 0 3 3 3 1 MarR family TrmB PF01978.19 gi|530548577|ref|YP_008429119.1| - 4.2e-06 26.5 0.1 1.4e-05 24.9 0.1 1.8 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.12 gi|530548577|ref|YP_008429119.1| - 2.4e-05 24.2 0.0 5.7e-05 23.0 0.0 1.7 1 0 0 1 1 1 1 HTH domain HTH_IclR PF09339.10 gi|530548577|ref|YP_008429119.1| - 9.3e-05 22.1 0.0 0.00025 20.8 0.0 1.7 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_38 PF13936.6 gi|530548577|ref|YP_008429119.1| - 0.00011 21.8 0.1 0.00022 20.9 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain FUR PF01475.19 gi|530548577|ref|YP_008429119.1| - 0.00039 20.6 0.0 0.001 19.2 0.0 1.6 1 1 0 1 1 1 1 Ferric uptake regulator family HTH_29 PF13551.6 gi|530548577|ref|YP_008429119.1| - 0.00081 19.4 0.1 0.0017 18.3 0.0 1.6 2 0 0 2 2 2 1 Winged helix-turn helix MarR PF01047.22 gi|530548577|ref|YP_008429119.1| - 0.0013 18.6 0.0 0.0026 17.6 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_23 PF13384.6 gi|530548577|ref|YP_008429119.1| - 0.0023 17.7 0.0 0.0055 16.5 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_36 PF13730.6 gi|530548577|ref|YP_008429119.1| - 0.0051 16.7 0.0 0.01 15.8 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain Rrf2 PF02082.20 gi|530548577|ref|YP_008429119.1| - 0.0064 16.8 0.0 0.013 15.9 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator HTH_34 PF13601.6 gi|530548577|ref|YP_008429119.1| - 0.0093 16.1 0.0 0.023 14.9 0.0 1.6 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_28 PF13518.6 gi|530548577|ref|YP_008429119.1| - 0.01 16.0 0.0 0.021 15.0 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain Fe_dep_repress PF01325.19 gi|530548577|ref|YP_008429119.1| - 0.02 15.1 0.0 0.043 14.0 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_DeoR PF08220.12 gi|530548577|ref|YP_008429119.1| - 0.044 13.5 0.0 0.08 12.7 0.0 1.4 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_27 PF13463.6 gi|530548577|ref|YP_008429119.1| - 0.055 14.0 0.1 0.13 12.8 0.1 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain TetR_C_1 PF02909.17 gi|530548577|ref|YP_008429119.1| - 0.088 12.6 0.0 0.18 11.6 0.0 1.5 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain DUF211 PF02680.14 gi|530548578|ref|YP_008429120.1| - 4.9e-38 129.2 3.1 5.5e-38 129.0 3.1 1.0 1 0 0 1 1 1 1 Uncharacterized ArCR, COG1888 Streptin-Immun PF11083.8 gi|530548578|ref|YP_008429120.1| - 0.016 15.6 0.3 0.022 15.2 0.0 1.5 2 0 0 2 2 2 0 Lantibiotic streptin immunity protein BRCT PF00533.26 gi|530548578|ref|YP_008429120.1| - 0.042 14.2 0.0 0.058 13.8 0.0 1.3 1 0 0 1 1 1 0 BRCA1 C Terminus (BRCT) domain HMA PF00403.26 gi|530548578|ref|YP_008429120.1| - 0.046 14.2 0.3 0.099 13.1 0.3 1.5 1 0 0 1 1 1 0 Heavy-metal-associated domain HTH_5 PF01022.20 gi|530548579|ref|YP_008429121.1| - 5.4e-16 58.2 1.1 1e-15 57.3 0.2 1.9 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|530548579|ref|YP_008429121.1| - 1.2e-15 57.3 0.1 3.8e-15 55.7 0.1 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|530548579|ref|YP_008429121.1| - 2.9e-09 36.3 0.7 6.8e-09 35.2 0.7 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|530548579|ref|YP_008429121.1| - 7.4e-08 32.2 0.3 2.6e-07 30.4 0.1 1.9 2 0 0 2 2 2 1 MarR family HTH_11 PF08279.12 gi|530548579|ref|YP_008429121.1| - 1.1e-07 31.7 0.5 3.1e-07 30.2 0.5 1.8 1 0 0 1 1 1 1 HTH domain TrmB PF01978.19 gi|530548579|ref|YP_008429121.1| - 2e-06 27.6 0.2 5.1e-06 26.3 0.2 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_29 PF13551.6 gi|530548579|ref|YP_008429121.1| - 9.6e-06 25.5 0.1 2.1e-05 24.5 0.1 1.6 1 0 0 1 1 1 1 Winged helix-turn helix HTH_23 PF13384.6 gi|530548579|ref|YP_008429121.1| - 1.5e-05 24.7 0.1 3.3e-05 23.6 0.1 1.6 1 0 0 1 1 1 1 Homeodomain-like domain DUF2513 PF10711.9 gi|530548579|ref|YP_008429121.1| - 1.6e-05 25.1 2.3 0.0012 19.1 0.1 2.2 2 0 0 2 2 2 1 Hypothetical protein (DUF2513) HTH_38 PF13936.6 gi|530548579|ref|YP_008429121.1| - 3.4e-05 23.5 0.4 0.00011 21.9 0.4 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain ArsR PF09824.9 gi|530548579|ref|YP_008429121.1| - 6.9e-05 22.5 1.1 0.00023 20.8 0.6 2.1 1 1 1 2 2 2 1 ArsR transcriptional regulator HTH_28 PF13518.6 gi|530548579|ref|YP_008429121.1| - 0.00011 22.3 0.3 0.00039 20.5 0.1 2.0 3 0 0 3 3 1 1 Helix-turn-helix domain HTH_27 PF13463.6 gi|530548579|ref|YP_008429121.1| - 0.00026 21.4 0.2 0.00096 19.6 0.2 1.9 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_Crp_2 PF13545.6 gi|530548579|ref|YP_008429121.1| - 0.00032 20.6 0.8 0.0014 18.6 0.4 2.1 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain Fe_dep_repress PF01325.19 gi|530548579|ref|YP_008429121.1| - 0.0014 18.7 0.1 0.0047 17.1 0.1 1.9 2 0 0 2 2 1 1 Iron dependent repressor, N-terminal DNA binding domain Sigma70_r4_2 PF08281.12 gi|530548579|ref|YP_008429121.1| - 0.0015 18.1 0.3 0.0049 16.5 0.3 1.9 1 0 0 1 1 1 1 Sigma-70, region 4 TFIIE_alpha PF02002.17 gi|530548579|ref|YP_008429121.1| - 0.0017 18.2 1.0 0.0017 18.2 1.0 2.4 1 1 2 3 3 3 1 TFIIE alpha subunit HTH_40 PF14493.6 gi|530548579|ref|YP_008429121.1| - 0.0025 18.3 2.4 0.0029 18.0 0.6 2.1 1 1 1 2 2 2 1 Helix-turn-helix domain HTH_34 PF13601.6 gi|530548579|ref|YP_008429121.1| - 0.0026 17.9 0.6 0.0077 16.4 0.1 2.0 3 0 0 3 3 1 1 Winged helix DNA-binding domain Sigma70_r4 PF04545.16 gi|530548579|ref|YP_008429121.1| - 0.0032 16.9 0.4 0.0087 15.6 0.4 1.8 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_IclR PF09339.10 gi|530548579|ref|YP_008429121.1| - 0.0053 16.5 0.1 0.014 15.2 0.1 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain Rrf2 PF02082.20 gi|530548579|ref|YP_008429121.1| - 0.0093 16.3 0.1 0.027 14.8 0.1 1.8 1 0 0 1 1 1 1 Transcriptional regulator MarR PF01047.22 gi|530548579|ref|YP_008429121.1| - 0.013 15.4 0.5 0.028 14.3 0.5 1.6 1 0 0 1 1 1 0 MarR family HTH_DeoR PF08220.12 gi|530548579|ref|YP_008429121.1| - 0.02 14.6 1.7 0.029 14.1 0.5 1.9 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain HTH_Mga PF08280.11 gi|530548579|ref|YP_008429121.1| - 0.027 14.5 0.1 0.11 12.6 0.1 2.0 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain Pathogen_betaC1 PF09593.10 gi|530548579|ref|YP_008429121.1| - 0.032 14.2 1.2 0.4 10.6 0.1 2.3 1 1 1 2 2 2 0 Beta-satellite pathogenicity beta C1 protein DUF4099 PF13351.6 gi|530548579|ref|YP_008429121.1| - 0.04 14.2 2.4 38 4.6 0.1 3.3 2 1 1 3 3 3 0 Protein of unknown function (DUF4099) Ribonuc_red_lgC PF02867.15 gi|530548579|ref|YP_008429121.1| - 0.048 12.2 0.5 0.094 11.2 0.1 1.5 2 0 0 2 2 2 0 Ribonucleotide reductase, barrel domain PadR PF03551.14 gi|530548579|ref|YP_008429121.1| - 0.052 13.5 1.0 0.5 10.4 0.2 2.3 2 0 0 2 2 2 0 Transcriptional regulator PadR-like family HTH_17 PF12728.7 gi|530548579|ref|YP_008429121.1| - 0.056 13.6 0.0 0.2 11.9 0.0 2.0 1 0 0 1 1 1 0 Helix-turn-helix domain mTERF PF02536.14 gi|530548579|ref|YP_008429121.1| - 0.057 12.3 0.7 0.73 8.7 0.2 2.3 2 1 0 2 2 2 0 mTERF HTH_7 PF02796.15 gi|530548579|ref|YP_008429121.1| - 0.067 13.3 0.1 0.17 12.0 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_35 PF13693.6 gi|530548579|ref|YP_008429121.1| - 0.075 13.1 0.4 1.2 9.2 0.1 2.3 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_CodY PF08222.11 gi|530548579|ref|YP_008429121.1| - 0.1 12.2 0.0 0.22 11.1 0.0 1.5 1 0 0 1 1 1 0 CodY helix-turn-helix domain AAA_23 PF13476.6 gi|530548579|ref|YP_008429121.1| - 0.36 11.3 6.5 0.48 10.9 6.5 1.2 1 0 0 1 1 1 0 AAA domain HTH_WhiA PF02650.14 gi|530548579|ref|YP_008429121.1| - 4.4 7.7 7.0 0.79 10.1 0.9 2.5 3 1 0 3 3 2 0 WhiA C-terminal HTH domain Succ_CoA_lig PF13607.6 gi|530548580|ref|YP_008429122.1| - 1.6e-59 199.7 4.4 1.2e-58 196.8 0.8 3.5 4 0 0 4 4 4 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|530548580|ref|YP_008429122.1| - 1.5e-27 96.3 1.9 2.3e-25 89.4 0.4 2.9 3 0 0 3 3 3 1 CoA binding domain CoA_binding PF02629.19 gi|530548580|ref|YP_008429122.1| - 2.5e-17 63.3 4.8 4.3e-17 62.6 1.5 2.6 2 1 1 3 3 3 1 CoA binding domain F420_oxidored PF03807.17 gi|530548580|ref|YP_008429122.1| - 0.022 15.4 1.2 0.022 15.4 1.2 3.4 5 1 0 5 5 5 0 NADP oxidoreductase coenzyme F420-dependent Catalase_C PF18011.1 gi|530548580|ref|YP_008429122.1| - 0.031 13.9 1.5 0.81 9.3 0.0 3.4 3 1 1 4 4 4 0 C-terminal domain found in long catalases Hpr_kinase_N PF02603.16 gi|530548580|ref|YP_008429122.1| - 0.045 13.8 0.0 0.45 10.6 0.0 2.5 2 0 0 2 2 2 0 HPr Serine kinase N terminus NAD_Gly3P_dh_N PF01210.23 gi|530548580|ref|YP_008429122.1| - 0.046 13.7 0.1 0.11 12.4 0.1 1.6 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus GTP_CH_N PF12471.8 gi|530548580|ref|YP_008429122.1| - 0.064 13.0 0.2 0.38 10.5 0.1 2.0 1 1 1 2 2 2 0 GTP cyclohydrolase N terminal TPR_19 PF14559.6 gi|530548581|ref|YP_008429123.1| - 0.027 15.0 7.2 0.26 11.8 0.2 4.2 3 1 2 5 5 5 0 Tetratricopeptide repeat TPR_2 PF07719.17 gi|530548581|ref|YP_008429123.1| - 1 9.6 8.2 8.5 6.8 0.0 5.0 5 0 0 5 5 5 0 Tetratricopeptide repeat TPR_8 PF13181.6 gi|530548581|ref|YP_008429123.1| - 3 8.3 9.5 16 6.0 0.1 4.7 5 0 0 5 5 5 0 Tetratricopeptide repeat tRNA-synt_1b PF00579.25 gi|530548582|ref|YP_008429124.1| - 2.7e-25 89.3 0.0 3.7e-25 88.8 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (W and Y) Aromatic_hydrox PF11723.8 gi|530548582|ref|YP_008429124.1| - 0.081 12.4 0.0 0.22 11.0 0.0 1.7 2 0 0 2 2 2 0 Homotrimeric ring hydroxylase FAA_hydrolase PF01557.18 gi|530548583|ref|YP_008429125.1| - 6.9e-71 238.4 0.0 7.8e-71 238.2 0.0 1.0 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family KH_2 PF07650.17 gi|530548583|ref|YP_008429125.1| - 0.074 12.9 0.2 0.17 11.7 0.2 1.6 1 0 0 1 1 1 0 KH domain ABC2_membrane_3 PF12698.7 gi|530548584|ref|YP_008429126.1| - 1e-35 123.5 6.9 1.2e-35 123.2 6.9 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|530548584|ref|YP_008429126.1| - 2.3e-22 79.5 20.6 1.5e-21 76.8 10.2 2.5 3 0 0 3 3 3 2 ABC-2 type transporter ABC2_membrane_2 PF12679.7 gi|530548584|ref|YP_008429126.1| - 2.8e-16 59.7 1.2 4.3e-16 59.0 1.2 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|530548584|ref|YP_008429126.1| - 0.93 9.4 15.5 0.1 12.6 6.0 3.2 3 1 0 3 3 3 0 ABC-2 family transporter protein ABC_tran PF00005.27 gi|530548585|ref|YP_008429127.1| - 3.3e-30 105.4 0.0 5.7e-30 104.6 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|530548585|ref|YP_008429127.1| - 1.1e-16 61.6 0.1 5.2e-09 36.3 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|530548585|ref|YP_008429127.1| - 8.1e-07 29.7 0.0 2e-06 28.4 0.0 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_23 PF13476.6 gi|530548585|ref|YP_008429127.1| - 5.3e-05 23.8 0.1 9e-05 23.1 0.1 1.6 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|530548585|ref|YP_008429127.1| - 0.00013 22.3 0.0 0.00032 21.0 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|530548585|ref|YP_008429127.1| - 0.00089 19.7 0.0 0.0018 18.6 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.19 gi|530548585|ref|YP_008429127.1| - 0.00093 18.7 0.0 0.72 9.3 0.0 2.1 1 1 1 2 2 2 2 RecF/RecN/SMC N terminal domain AAA PF00004.29 gi|530548585|ref|YP_008429127.1| - 0.0026 18.2 0.0 0.012 16.0 0.0 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) TsaE PF02367.17 gi|530548585|ref|YP_008429127.1| - 0.0027 17.7 0.0 0.0058 16.6 0.0 1.5 1 0 0 1 1 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_29 PF13555.6 gi|530548585|ref|YP_008429127.1| - 0.0029 17.3 0.0 0.006 16.3 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_30 PF13604.6 gi|530548585|ref|YP_008429127.1| - 0.004 16.9 0.0 0.011 15.5 0.0 1.8 1 1 1 2 2 2 1 AAA domain AAA_18 PF13238.6 gi|530548585|ref|YP_008429127.1| - 0.0046 17.5 0.0 0.0091 16.5 0.0 1.7 1 1 0 1 1 1 1 AAA domain Rad17 PF03215.15 gi|530548585|ref|YP_008429127.1| - 0.0054 16.7 0.0 0.0096 15.9 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_28 PF13521.6 gi|530548585|ref|YP_008429127.1| - 0.0061 16.8 0.0 0.011 16.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|530548585|ref|YP_008429127.1| - 0.0062 16.5 0.0 0.012 15.5 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_15 PF13175.6 gi|530548585|ref|YP_008429127.1| - 0.013 15.2 0.0 0.93 9.1 0.0 2.2 1 1 0 2 2 2 0 AAA ATPase domain AAA_27 PF13514.6 gi|530548585|ref|YP_008429127.1| - 0.02 14.5 0.0 0.043 13.4 0.0 1.5 2 0 0 2 2 1 0 AAA domain ATPase_2 PF01637.18 gi|530548585|ref|YP_008429127.1| - 0.023 14.6 0.1 0.12 12.2 0.0 2.0 1 1 1 2 2 2 0 ATPase domain predominantly from Archaea IstB_IS21 PF01695.17 gi|530548585|ref|YP_008429127.1| - 0.026 14.3 0.0 1.5 8.5 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_14 PF13173.6 gi|530548585|ref|YP_008429127.1| - 0.057 13.5 0.1 1.2 9.2 0.1 2.7 1 1 1 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|530548585|ref|YP_008429127.1| - 0.058 13.1 0.1 1.9 8.1 0.0 2.1 2 0 0 2 2 2 0 AAA domain NACHT PF05729.12 gi|530548585|ref|YP_008429127.1| - 0.061 13.2 0.0 0.13 12.1 0.0 1.6 2 0 0 2 2 1 0 NACHT domain NTPase_1 PF03266.15 gi|530548585|ref|YP_008429127.1| - 0.063 13.2 0.0 0.41 10.5 0.0 2.1 2 0 0 2 2 2 0 NTPase AAA_5 PF07728.14 gi|530548585|ref|YP_008429127.1| - 0.072 13.1 0.1 0.3 11.1 0.0 2.0 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_25 PF13481.6 gi|530548585|ref|YP_008429127.1| - 0.082 12.5 0.0 0.16 11.5 0.0 1.6 1 1 0 1 1 1 0 AAA domain SRP54 PF00448.22 gi|530548585|ref|YP_008429127.1| - 0.13 11.9 0.0 0.2 11.2 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_13 PF13166.6 gi|530548585|ref|YP_008429127.1| - 0.13 10.8 0.1 0.36 9.4 0.0 1.6 2 0 0 2 2 2 0 AAA domain cobW PF02492.19 gi|530548585|ref|YP_008429127.1| - 0.15 11.7 0.2 0.84 9.2 0.0 2.0 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain RNA_helicase PF00910.22 gi|530548585|ref|YP_008429127.1| - 0.16 12.3 0.0 0.34 11.3 0.0 1.6 1 0 0 1 1 1 0 RNA helicase AAA_33 PF13671.6 gi|530548585|ref|YP_008429127.1| - 0.17 12.1 0.0 0.29 11.3 0.0 1.7 1 1 0 1 1 1 0 AAA domain DEAD PF00270.29 gi|530548585|ref|YP_008429127.1| - 0.17 11.7 0.0 0.62 9.8 0.0 1.8 1 1 0 1 1 1 0 DEAD/DEAH box helicase PhoU PF01895.19 gi|530548586|ref|YP_008429128.1| - 7.8e-20 71.1 8.1 3.8e-11 43.3 0.8 2.2 2 0 0 2 2 2 2 PhoU domain Shikimate_dh_N PF08501.11 gi|530548586|ref|YP_008429128.1| - 0.023 14.9 0.0 0.7 10.2 0.0 2.7 2 1 0 2 2 2 0 Shikimate dehydrogenase substrate binding domain Dpoe2NT PF12213.8 gi|530548586|ref|YP_008429128.1| - 0.089 13.1 0.4 2.2 8.6 0.1 2.4 2 0 0 2 2 2 0 DNA polymerases epsilon N terminal TetR_C_3 PF08362.11 gi|530548586|ref|YP_008429128.1| - 0.093 12.7 0.0 0.18 11.8 0.0 1.5 1 0 0 1 1 1 0 YcdC-like protein, C-terminal region ABC_tran PF00005.27 gi|530548587|ref|YP_008429129.1| - 4.2e-32 111.5 0.0 6e-32 111.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|530548587|ref|YP_008429129.1| - 2.4e-08 34.2 0.0 5.6e-05 23.1 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|530548587|ref|YP_008429129.1| - 7.9e-05 22.9 0.0 0.00018 21.8 0.0 1.7 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|530548587|ref|YP_008429129.1| - 8.3e-05 22.1 0.0 0.001 18.5 0.0 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|530548587|ref|YP_008429129.1| - 0.00045 19.9 0.0 0.00084 19.0 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|530548587|ref|YP_008429129.1| - 0.0018 18.6 0.0 0.0027 18.1 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|530548587|ref|YP_008429129.1| - 0.008 16.1 0.0 0.017 15.0 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase PRK PF00485.18 gi|530548587|ref|YP_008429129.1| - 0.0092 15.7 0.0 0.015 15.0 0.0 1.3 1 0 0 1 1 1 1 Phosphoribulokinase / Uridine kinase family AAA_23 PF13476.6 gi|530548587|ref|YP_008429129.1| - 0.0094 16.5 0.0 0.016 15.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_24 PF13479.6 gi|530548587|ref|YP_008429129.1| - 0.014 15.1 0.0 0.033 13.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain Rad17 PF03215.15 gi|530548587|ref|YP_008429129.1| - 0.016 15.1 0.0 0.028 14.3 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_30 PF13604.6 gi|530548587|ref|YP_008429129.1| - 0.017 14.9 0.0 0.09 12.5 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA PF00004.29 gi|530548587|ref|YP_008429129.1| - 0.029 14.8 0.0 2.9 8.3 0.0 2.3 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.6 gi|530548587|ref|YP_008429129.1| - 0.041 13.5 0.3 0.13 11.8 0.0 1.9 2 1 0 2 2 2 0 AAA domain AAA_5 PF07728.14 gi|530548587|ref|YP_008429129.1| - 0.041 13.9 0.0 0.083 12.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) RNA_helicase PF00910.22 gi|530548587|ref|YP_008429129.1| - 0.099 13.0 0.0 0.28 11.6 0.0 1.7 2 0 0 2 2 2 0 RNA helicase AAA_15 PF13175.6 gi|530548587|ref|YP_008429129.1| - 0.1 12.3 0.0 2.7 7.6 0.0 2.1 1 1 0 2 2 2 0 AAA ATPase domain ABC_ATPase PF09818.9 gi|530548587|ref|YP_008429129.1| - 0.16 10.7 0.0 4.7 5.9 0.0 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class BPD_transp_1 PF00528.22 gi|530548588|ref|YP_008429130.1| - 1.1e-14 54.6 14.1 1.1e-14 54.6 14.1 2.4 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|530548589|ref|YP_008429131.1| - 3.9e-12 46.3 18.7 3.9e-12 46.3 18.7 2.4 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component AP_endonuc_2 PF01261.24 gi|530548590|ref|YP_008429132.1| - 3.1e-25 88.9 0.1 3.8e-25 88.6 0.1 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel Alk_phosphatase PF00245.20 gi|530548591|ref|YP_008429133.1| - 3.5e-88 296.3 0.8 5e-88 295.8 0.8 1.1 1 0 0 1 1 1 1 Alkaline phosphatase Metalloenzyme PF01676.18 gi|530548591|ref|YP_008429133.1| - 1.5e-07 31.1 1.7 1.6e-05 24.4 1.0 2.8 2 1 0 2 2 2 2 Metalloenzyme superfamily Sulfatase PF00884.23 gi|530548591|ref|YP_008429133.1| - 0.00024 20.6 0.0 0.00054 19.5 0.0 1.6 1 1 0 1 1 1 1 Sulfatase Dockerin_1 PF00404.18 gi|530548591|ref|YP_008429133.1| - 0.00045 20.3 2.5 0.0012 18.9 2.5 1.8 1 0 0 1 1 1 1 Dockerin type I domain PBP_like_2 PF12849.7 gi|530548592|ref|YP_008429134.1| - 2.9e-55 187.9 2.6 3.6e-55 187.6 2.6 1.1 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_1 PF01547.25 gi|530548592|ref|YP_008429134.1| - 8.4e-20 71.9 7.3 1.1e-19 71.5 7.3 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein PBP_like PF12727.7 gi|530548592|ref|YP_008429134.1| - 3.2e-06 26.4 0.0 2.7e-05 23.4 0.0 2.2 1 1 0 1 1 1 1 PBP superfamily domain UPF0020 PF01170.18 gi|530548593|ref|YP_008429135.1| - 4.4e-39 134.2 0.0 3.8e-38 131.2 0.0 2.0 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 THUMP PF02926.17 gi|530548593|ref|YP_008429135.1| - 1.6e-27 96.3 1.4 2.8e-27 95.6 1.4 1.4 1 0 0 1 1 1 1 THUMP domain Methyltransf_31 PF13847.6 gi|530548593|ref|YP_008429135.1| - 1.8e-10 40.8 0.0 3e-10 40.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|530548593|ref|YP_008429135.1| - 1.1e-07 32.5 0.0 2.6e-07 31.3 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.10 gi|530548593|ref|YP_008429135.1| - 3.8e-07 29.8 0.0 6e-07 29.2 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_11 PF08241.12 gi|530548593|ref|YP_008429135.1| - 6.7e-06 26.7 0.0 2e-05 25.2 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain N6_N4_Mtase PF01555.18 gi|530548593|ref|YP_008429135.1| - 1.1e-05 25.2 0.0 2.1e-05 24.3 0.0 1.4 1 0 0 1 1 1 1 DNA methylase N6_Mtase PF02384.16 gi|530548593|ref|YP_008429135.1| - 2.3e-05 23.8 0.0 4e-05 23.0 0.0 1.3 1 0 0 1 1 1 1 N-6 DNA Methylase Methyltransf_4 PF02390.17 gi|530548593|ref|YP_008429135.1| - 0.0017 17.8 0.0 0.0039 16.7 0.0 1.6 1 0 0 1 1 1 1 Putative methyltransferase MTS PF05175.14 gi|530548593|ref|YP_008429135.1| - 0.0021 17.6 0.0 0.0034 17.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Ubie_methyltran PF01209.18 gi|530548593|ref|YP_008429135.1| - 0.012 14.9 0.0 0.019 14.3 0.0 1.3 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family Cons_hypoth95 PF03602.15 gi|530548593|ref|YP_008429135.1| - 0.013 15.2 0.0 0.024 14.3 0.0 1.5 1 0 0 1 1 1 0 Conserved hypothetical protein 95 MethyltransfD12 PF02086.15 gi|530548593|ref|YP_008429135.1| - 0.045 13.4 0.0 0.075 12.7 0.0 1.3 1 0 0 1 1 1 0 D12 class N6 adenine-specific DNA methyltransferase Methyltransf_18 PF12847.7 gi|530548593|ref|YP_008429135.1| - 0.12 12.3 0.0 1.4 8.9 0.0 2.1 2 0 0 2 2 2 0 Methyltransferase domain BPD_transp_1 PF00528.22 gi|530548595|ref|YP_008429137.1| - 6.2e-21 75.0 20.5 6.2e-21 75.0 20.5 2.0 2 1 1 3 3 3 1 Binding-protein-dependent transport system inner membrane component DUF4179 PF13786.6 gi|530548595|ref|YP_008429137.1| - 0.55 10.7 0.0 0.55 10.7 0.0 2.7 3 1 0 3 3 3 0 Domain of unknown function (DUF4179) BPD_transp_1 PF00528.22 gi|530548596|ref|YP_008429138.1| - 2.4e-10 40.4 20.1 2.4e-10 40.4 20.1 1.9 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF2070 PF09843.9 gi|530548596|ref|YP_008429138.1| - 3.8 5.7 9.8 6.2 5.0 9.8 1.3 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) MMR_HSR1 PF01926.23 gi|530548597|ref|YP_008429139.1| - 1.6e-15 57.2 0.5 8.3e-13 48.4 0.0 2.5 2 0 0 2 2 2 2 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|530548597|ref|YP_008429139.1| - 1.9e-12 47.0 0.7 1.7e-06 27.6 0.1 2.3 2 0 0 2 2 2 2 Ferrous iron transport protein B RsgA_GTPase PF03193.16 gi|530548597|ref|YP_008429139.1| - 7.1e-11 42.3 0.2 2.2e-10 40.7 0.2 1.8 1 1 0 1 1 1 1 RsgA GTPase Dynamin_N PF00350.23 gi|530548597|ref|YP_008429139.1| - 4.8e-08 33.2 0.5 0.011 15.8 0.0 3.6 2 1 1 3 3 3 2 Dynamin family Arf PF00025.21 gi|530548597|ref|YP_008429139.1| - 7.5e-06 25.5 1.7 0.0011 18.4 0.1 2.3 2 0 0 2 2 2 2 ADP-ribosylation factor family GTP_EFTU PF00009.27 gi|530548597|ref|YP_008429139.1| - 1.2e-05 24.9 0.5 0.0005 19.7 0.3 2.9 2 1 1 3 3 3 1 Elongation factor Tu GTP binding domain MMR_HSR1_Xtn PF16897.5 gi|530548597|ref|YP_008429139.1| - 0.0067 16.4 0.0 0.023 14.7 0.0 1.9 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain Roc PF08477.13 gi|530548597|ref|YP_008429139.1| - 0.041 14.1 1.2 0.41 10.9 0.2 2.6 2 1 1 3 3 3 0 Ras of Complex, Roc, domain of DAPkinase cobW PF02492.19 gi|530548597|ref|YP_008429139.1| - 0.066 12.8 1.4 0.57 9.8 0.1 2.2 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain Ras PF00071.22 gi|530548597|ref|YP_008429139.1| - 0.075 12.6 1.0 3.3 7.3 0.3 2.5 2 0 0 2 2 2 0 Ras family AAA_18 PF13238.6 gi|530548597|ref|YP_008429139.1| - 0.088 13.4 0.0 0.27 11.8 0.0 1.9 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|530548597|ref|YP_008429139.1| - 0.1 11.7 0.2 0.59 9.3 0.2 2.0 2 0 0 2 2 2 0 NB-ARC domain G-alpha PF00503.20 gi|530548597|ref|YP_008429139.1| - 0.12 11.5 0.1 0.3 10.2 0.1 1.8 1 1 0 1 1 1 0 G-protein alpha subunit DAP3 PF10236.9 gi|530548597|ref|YP_008429139.1| - 0.15 11.2 0.5 0.31 10.1 0.5 1.5 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 HGD-D PF06050.13 gi|530548597|ref|YP_008429139.1| - 0.55 9.9 2.5 1.2 8.8 0.0 2.4 2 1 0 2 2 2 0 2-hydroxyglutaryl-CoA dehydratase, D-component DUF3783 PF12646.7 gi|530548597|ref|YP_008429139.1| - 7.1 6.7 6.0 1.7 8.6 1.4 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF3783) DUF515 PF04415.12 gi|530548600|ref|YP_008429142.1| - 1.6e-127 425.6 29.2 1.8e-127 425.4 29.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF515) Cadherin_C_2 PF16492.5 gi|530548600|ref|YP_008429142.1| - 0.046 14.5 1.8 0.61 10.9 0.2 2.6 2 1 0 2 2 2 0 Cadherin cytoplasmic C-terminal GA PF01468.17 gi|530548600|ref|YP_008429142.1| - 0.37 11.1 16.6 2.9 8.2 5.3 4.1 3 2 0 3 3 3 0 GA module RcpC PF16976.5 gi|530548600|ref|YP_008429142.1| - 2.8 8.0 9.6 0.05 13.6 1.1 2.6 2 1 0 3 3 3 0 Flp pilus assembly protein RcpC/CpaB DUF4330 PF14221.6 gi|530548600|ref|YP_008429142.1| - 5 7.3 15.0 0.2 11.9 4.1 3.0 3 0 0 3 3 3 0 Domain of unknown function (DUF4330) T2SSE PF00437.20 gi|530548602|ref|YP_008429144.1| - 4.5e-55 186.6 0.0 9.3e-52 175.8 0.0 2.4 2 0 0 2 2 2 2 Type II/IV secretion system protein Intein_splicing PF14890.6 gi|530548602|ref|YP_008429144.1| - 2e-24 86.1 0.0 5.3e-24 84.7 0.0 1.8 1 1 0 1 1 1 1 Intein splicing domain LAGLIDADG_3 PF14528.6 gi|530548602|ref|YP_008429144.1| - 1.4e-19 70.2 0.1 8.1e-16 58.1 0.1 2.8 2 0 0 2 2 2 2 LAGLIDADG-like domain Hom_end PF05204.14 gi|530548602|ref|YP_008429144.1| - 5e-07 29.9 0.0 2.1e-05 24.6 0.0 2.7 2 0 0 2 2 2 1 Homing endonuclease FtsK_SpoIIIE PF01580.18 gi|530548602|ref|YP_008429144.1| - 0.0001 21.8 1.7 0.00031 20.2 0.2 2.2 2 0 0 2 2 2 1 FtsK/SpoIIIE family HTH_31 PF13560.6 gi|530548602|ref|YP_008429144.1| - 0.0011 19.3 0.9 0.01 16.2 0.4 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain Zeta_toxin PF06414.12 gi|530548602|ref|YP_008429144.1| - 0.0024 17.2 0.0 0.0057 16.0 0.0 1.6 1 0 0 1 1 1 1 Zeta toxin DEAD PF00270.29 gi|530548602|ref|YP_008429144.1| - 0.0028 17.5 0.1 1.8 8.3 0.0 2.4 2 0 0 2 2 2 2 DEAD/DEAH box helicase AAA_29 PF13555.6 gi|530548602|ref|YP_008429144.1| - 0.0045 16.7 0.1 0.012 15.3 0.1 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain LAGLIDADG_WhiA PF14527.6 gi|530548602|ref|YP_008429144.1| - 0.0094 16.0 0.2 9.5 6.4 0.0 3.3 3 0 0 3 3 3 1 WhiA LAGLIDADG-like domain PT-HINT PF07591.11 gi|530548602|ref|YP_008429144.1| - 0.012 15.9 0.1 0.36 11.1 0.0 2.4 2 0 0 2 2 2 0 Pretoxin HINT domain ABC_tran PF00005.27 gi|530548602|ref|YP_008429144.1| - 0.016 15.7 0.0 0.048 14.2 0.0 1.8 1 0 0 1 1 1 0 ABC transporter DUF5427 PF10310.9 gi|530548602|ref|YP_008429144.1| - 0.059 12.3 0.0 0.11 11.4 0.0 1.3 1 0 0 1 1 1 0 Family of unknown function (DUF5427) AAA_16 PF13191.6 gi|530548602|ref|YP_008429144.1| - 0.063 13.7 0.0 0.2 12.0 0.0 1.9 1 0 0 1 1 1 0 AAA ATPase domain AAA_19 PF13245.6 gi|530548602|ref|YP_008429144.1| - 0.087 13.2 0.3 0.26 11.6 0.3 1.7 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|530548602|ref|YP_008429144.1| - 0.11 12.8 0.1 0.27 11.5 0.1 1.7 1 0 0 1 1 1 0 AAA domain T2SSF PF00482.23 gi|530548603|ref|YP_008429145.1| - 2e-22 79.5 0.9 2e-22 79.5 0.9 3.1 3 0 0 3 3 3 1 Type II secretion system (T2SS), protein F DUF2207 PF09972.9 gi|530548603|ref|YP_008429145.1| - 0.002 17.0 3.0 0.37 9.5 0.1 2.1 2 0 0 2 2 2 2 Predicted membrane protein (DUF2207) MPC PF03650.13 gi|530548603|ref|YP_008429145.1| - 0.087 13.0 0.0 0.2 11.8 0.0 1.6 1 0 0 1 1 1 0 Mitochondrial pyruvate carriers MacB_PCD PF12704.7 gi|530548603|ref|YP_008429145.1| - 0.13 12.6 0.1 0.24 11.7 0.1 1.6 1 0 0 1 1 1 0 MacB-like periplasmic core domain T2SSF PF00482.23 gi|530548604|ref|YP_008429146.1| - 1.3e-17 63.9 1.6 1.3e-17 63.9 1.6 2.8 3 0 0 3 3 3 1 Type II secretion system (T2SS), protein F SEA PF01390.20 gi|530548604|ref|YP_008429146.1| - 0.12 12.4 0.0 0.2 11.8 0.0 1.3 1 0 0 1 1 1 0 SEA domain Phage_holin_3_3 PF16083.5 gi|530548604|ref|YP_008429146.1| - 0.67 10.1 0.1 0.67 10.1 0.1 3.9 4 1 0 4 4 4 0 LydA holin phage, holin superfamily III CrgA PF06781.12 gi|530548604|ref|YP_008429146.1| - 3.5 7.8 8.4 0.75 9.9 0.2 3.3 2 1 1 3 3 3 0 Cell division protein CrgA FKBP_C PF00254.28 gi|530548605|ref|YP_008429147.1| - 1.3e-20 73.5 0.3 2.1e-20 72.9 0.3 1.4 1 0 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase DUF2118 PF09891.9 gi|530548607|ref|YP_008429149.1| - 9.6e-43 145.7 0.8 1.1e-42 145.5 0.8 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2118) YjzC PF14168.6 gi|530548607|ref|YP_008429149.1| - 0.17 12.3 0.0 0.74 10.2 0.0 2.1 2 0 0 2 2 2 0 YjzC-like protein DUF4129 PF13559.6 gi|530548608|ref|YP_008429150.1| - 4.1e-07 30.2 1.2 5.3e-07 29.8 0.2 1.7 2 0 0 2 2 2 1 Domain of unknown function (DUF4129) DUF5305 PF17231.2 gi|530548608|ref|YP_008429150.1| - 0.45 9.9 3.6 0.59 9.5 0.0 2.4 3 0 0 3 3 3 0 Family of unknown function (DUF5305) DHHC PF01529.20 gi|530548608|ref|YP_008429150.1| - 0.6 10.2 3.3 56 3.8 5.5 2.4 1 1 1 2 2 2 0 DHHC palmitoyltransferase TssO PF17561.2 gi|530548608|ref|YP_008429150.1| - 2.3 8.3 6.1 27 4.9 0.0 2.9 2 1 0 2 2 2 0 Type VI secretion system, TssO Yip1 PF04893.17 gi|530548608|ref|YP_008429150.1| - 6.7 6.4 14.5 1.1e+02 2.5 15.0 2.5 1 1 0 1 1 1 0 Yip1 domain Img2 PF05046.14 gi|530548609|ref|YP_008429151.1| - 0.014 15.7 0.1 0.021 15.1 0.1 1.3 1 0 0 1 1 1 0 Mitochondrial large subunit ribosomal protein (Img2) AAA_25 PF13481.6 gi|530548609|ref|YP_008429151.1| - 0.034 13.7 0.0 0.038 13.6 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_3 PF07726.11 gi|530548610|ref|YP_008429152.1| - 3e-68 227.7 0.1 4.9e-68 227.0 0.1 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_2 PF17863.1 gi|530548610|ref|YP_008429152.1| - 2.2e-21 75.5 0.1 4.3e-21 74.5 0.1 1.5 1 0 0 1 1 1 1 AAA lid domain AAA_5 PF07728.14 gi|530548610|ref|YP_008429152.1| - 5.3e-14 52.4 0.1 1.2e-12 47.9 0.0 2.5 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|530548610|ref|YP_008429152.1| - 1.6e-05 25.3 0.0 2.8e-05 24.5 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 gi|530548610|ref|YP_008429152.1| - 0.00019 21.2 0.0 0.00059 19.6 0.0 1.8 1 1 0 1 1 1 1 Sigma-54 interaction domain RuvB_N PF05496.12 gi|530548610|ref|YP_008429152.1| - 0.00065 19.5 0.4 0.0081 15.9 0.0 2.5 2 1 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain MCM PF00493.23 gi|530548610|ref|YP_008429152.1| - 0.0035 16.5 0.0 0.0072 15.4 0.0 1.5 1 1 0 1 1 1 1 MCM P-loop domain MCM_lid PF17855.1 gi|530548610|ref|YP_008429152.1| - 0.015 15.7 0.2 0.03 14.7 0.2 1.5 1 0 0 1 1 1 0 MCM AAA-lid domain AAA_lid_8 PF17868.1 gi|530548610|ref|YP_008429152.1| - 0.023 14.6 0.3 0.11 12.5 0.0 2.3 2 1 0 2 2 2 0 AAA lid domain Mg_chelatase PF01078.21 gi|530548610|ref|YP_008429152.1| - 0.092 12.1 0.7 6.3 6.1 0.0 2.3 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI TIP49_C PF17856.1 gi|530548610|ref|YP_008429152.1| - 0.11 12.6 2.5 5 7.3 0.1 3.3 1 1 1 2 2 2 0 TIP49 AAA-lid domain DUF58 PF01882.18 gi|530548611|ref|YP_008429153.1| - 3.2e-21 75.4 0.0 6.5e-21 74.4 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function DUF58 MNHE PF01899.16 gi|530548611|ref|YP_008429153.1| - 0.11 12.3 0.8 0.21 11.4 0.8 1.4 1 0 0 1 1 1 0 Na+/H+ ion antiporter subunit MASE1 PF05231.14 gi|530548612|ref|YP_008429154.1| - 0.034 13.3 15.4 0.043 13.0 15.4 1.1 1 0 0 1 1 1 0 MASE1 NEMP PF10225.9 gi|530548612|ref|YP_008429154.1| - 0.051 13.2 9.4 0.017 14.8 6.8 1.5 1 1 1 2 2 2 0 NEMP family DUF3742 PF12553.8 gi|530548612|ref|YP_008429154.1| - 8.6 6.5 7.5 0.39 10.9 0.4 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3742) PfkB PF00294.24 gi|530548613|ref|YP_008429155.1| - 3.2e-46 158.0 0.0 4.2e-46 157.6 0.0 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.12 gi|530548613|ref|YP_008429155.1| - 9.2e-11 41.6 0.0 1.8e-10 40.6 0.0 1.4 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase Toprim_3 PF13362.6 gi|530548613|ref|YP_008429155.1| - 0.085 13.2 0.0 0.26 11.7 0.0 1.8 2 1 0 2 2 2 0 Toprim domain Mac PF12464.8 gi|530548613|ref|YP_008429155.1| - 0.089 13.0 0.0 0.23 11.7 0.0 1.7 1 0 0 1 1 1 0 Maltose acetyltransferase GP3_package PF16677.5 gi|530548613|ref|YP_008429155.1| - 0.11 12.6 0.1 0.21 11.7 0.1 1.4 1 0 0 1 1 1 0 DNA-packaging protein gp3 DUF1580 PF07618.11 gi|530548614|ref|YP_008429156.1| - 0.0078 15.8 0.0 0.014 15.0 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1580) LAGLIDADG_3 PF14528.6 gi|530548614|ref|YP_008429156.1| - 0.013 15.8 0.0 0.024 14.9 0.0 1.5 1 0 0 1 1 1 0 LAGLIDADG-like domain LAGLIDADG_3 PF14528.6 gi|530548615|ref|YP_008429157.1| - 1.5e-17 63.7 0.7 2.5e-17 62.9 0.7 1.4 1 1 0 1 1 1 1 LAGLIDADG-like domain NPV_P10 PF05531.12 gi|530548616|ref|YP_008429158.1| - 6.2e-07 29.8 13.3 0.0088 16.5 0.2 4.6 1 1 3 4 4 4 3 Nucleopolyhedrovirus P10 protein Baculo_PEP_C PF04513.12 gi|530548616|ref|YP_008429158.1| - 0.00011 22.3 13.3 0.21 11.6 3.9 4.1 1 1 3 4 4 4 3 Baculovirus polyhedron envelope protein, PEP, C terminus JIP_LZII PF16471.5 gi|530548616|ref|YP_008429158.1| - 0.00038 20.6 2.5 0.00038 20.6 2.5 5.2 4 2 0 4 4 4 1 JNK-interacting protein leucine zipper II ZapB PF06005.12 gi|530548616|ref|YP_008429158.1| - 0.00066 20.1 8.8 0.00066 20.1 8.8 5.2 2 2 1 3 3 2 1 Cell division protein ZapB DivIC PF04977.15 gi|530548616|ref|YP_008429158.1| - 0.0018 18.0 3.2 0.0018 18.0 3.2 4.8 4 1 1 5 5 4 1 Septum formation initiator MtrG PF04210.13 gi|530548616|ref|YP_008429158.1| - 0.002 17.9 10.0 0.67 9.8 0.0 5.1 2 2 3 5 5 5 1 Tetrahydromethanopterin S-methyltransferase, subunit G DUF2205 PF10224.9 gi|530548616|ref|YP_008429158.1| - 0.0047 16.9 1.5 0.0047 16.9 1.5 4.9 2 1 4 6 6 6 1 Short coiled-coil protein Csm1_N PF18504.1 gi|530548616|ref|YP_008429158.1| - 0.0068 16.7 3.5 0.0068 16.7 3.5 5.0 4 2 1 5 5 4 1 Csm1 N-terminal domain DUF948 PF06103.11 gi|530548616|ref|YP_008429158.1| - 0.011 15.9 10.7 0.9 9.8 0.2 4.2 1 1 2 3 3 3 0 Bacterial protein of unknown function (DUF948) PikAIV_N PF18605.1 gi|530548616|ref|YP_008429158.1| - 0.012 15.2 4.3 0.012 15.2 4.3 3.0 3 0 0 3 3 2 0 Narbonolide/10-deoxymethynolide synthase PikA4 N-terminal domain DUF4363 PF14276.6 gi|530548616|ref|YP_008429158.1| - 0.014 15.5 4.7 0.014 15.5 4.7 3.6 1 1 1 3 3 3 0 Domain of unknown function (DUF4363) TPR_MLP1_2 PF07926.12 gi|530548616|ref|YP_008429158.1| - 0.015 15.3 34.8 0.022 14.8 8.0 3.9 2 1 0 3 3 3 0 TPR/MLP1/MLP2-like protein DUF3450 PF11932.8 gi|530548616|ref|YP_008429158.1| - 0.017 14.4 20.6 0.032 13.6 0.8 3.4 3 1 0 3 3 3 0 Protein of unknown function (DUF3450) Med9 PF07544.13 gi|530548616|ref|YP_008429158.1| - 0.02 15.0 3.3 0.02 15.0 3.3 4.7 2 1 3 5 5 5 0 RNA polymerase II transcription mediator complex subunit 9 Lebercilin PF15619.6 gi|530548616|ref|YP_008429158.1| - 0.025 14.2 2.9 0.025 14.2 2.9 4.2 2 1 1 4 4 4 0 Ciliary protein causing Leber congenital amaurosis disease AIP3 PF03915.13 gi|530548616|ref|YP_008429158.1| - 0.033 13.3 23.8 0.079 12.0 3.2 2.9 1 1 0 2 2 2 0 Actin interacting protein 3 DASH_Dad4 PF08650.10 gi|530548616|ref|YP_008429158.1| - 0.035 14.1 12.4 2.1 8.4 0.1 4.8 3 1 2 5 5 5 0 DASH complex subunit Dad4 PilJ PF13675.6 gi|530548616|ref|YP_008429158.1| - 0.035 14.1 7.1 2.6 8.1 0.1 4.0 2 1 1 4 4 4 0 Type IV pili methyl-accepting chemotaxis transducer N-term Prp19 PF08606.11 gi|530548616|ref|YP_008429158.1| - 0.042 13.8 0.3 0.042 13.8 0.3 3.2 3 1 0 3 3 2 0 Prp19/Pso4-like VPS13_C PF16909.5 gi|530548616|ref|YP_008429158.1| - 0.068 12.9 1.8 2.3 8.0 0.2 2.2 2 0 0 2 2 2 0 Vacuolar-sorting-associated 13 protein C-terminal SPACA9 PF15120.6 gi|530548616|ref|YP_008429158.1| - 0.078 12.7 4.8 3.2 7.5 0.5 3.2 1 1 2 3 3 3 0 Sperm acrosome-associated protein 9 Noelin-1 PF12308.8 gi|530548616|ref|YP_008429158.1| - 0.09 12.8 0.4 0.09 12.8 0.4 3.9 3 1 1 4 4 4 0 Neurogenesis glycoprotein DASH_Dam1 PF08653.10 gi|530548616|ref|YP_008429158.1| - 0.094 12.5 9.0 8.7 6.2 0.3 4.9 3 2 1 4 4 4 0 DASH complex subunit Dam1 KxDL PF10241.9 gi|530548616|ref|YP_008429158.1| - 0.094 13.0 21.1 6.7 7.1 0.1 5.6 2 1 3 5 5 5 0 Uncharacterized conserved protein Prominin PF05478.11 gi|530548616|ref|YP_008429158.1| - 0.1 10.5 25.0 0.0069 14.4 5.1 3.0 1 1 0 3 3 3 0 Prominin DivIVA PF05103.13 gi|530548616|ref|YP_008429158.1| - 0.12 12.4 30.4 0.11 12.6 5.7 5.0 2 1 3 5 5 5 0 DivIVA protein DUF4140 PF13600.6 gi|530548616|ref|YP_008429158.1| - 0.13 12.7 24.3 0.63 10.5 2.2 4.5 2 2 0 3 3 3 0 N-terminal domain of unknown function (DUF4140) DHR10 PF18595.1 gi|530548616|ref|YP_008429158.1| - 0.14 12.2 37.4 0.42 10.7 11.6 4.1 2 1 2 4 4 4 0 Designed helical repeat protein 10 domain UPF0242 PF06785.11 gi|530548616|ref|YP_008429158.1| - 0.16 12.0 39.2 0.13 12.4 10.0 3.2 1 1 2 3 3 3 0 Uncharacterised protein family (UPF0242) N-terminus Nup54 PF13874.6 gi|530548616|ref|YP_008429158.1| - 0.18 11.9 27.0 0.71 10.0 5.9 3.8 2 1 0 3 3 3 0 Nucleoporin complex subunit 54 GAS PF13851.6 gi|530548616|ref|YP_008429158.1| - 0.21 10.9 43.9 0.17 11.2 9.7 3.9 2 1 1 3 3 3 0 Growth-arrest specific micro-tubule binding Rootletin PF15035.6 gi|530548616|ref|YP_008429158.1| - 0.24 11.4 33.3 0.47 10.5 10.6 3.2 1 1 1 2 2 2 0 Ciliary rootlet component, centrosome cohesion DUF4407 PF14362.6 gi|530548616|ref|YP_008429158.1| - 0.32 10.3 14.8 1.7e+02 1.3 14.8 2.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) Leu_zip PF15294.6 gi|530548616|ref|YP_008429158.1| - 0.38 10.2 36.9 0.12 11.8 6.9 3.1 1 1 2 3 3 3 0 Leucine zipper BLOC1_2 PF10046.9 gi|530548616|ref|YP_008429158.1| - 0.42 11.0 33.9 0.053 13.8 4.4 5.3 3 2 3 6 6 5 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 GARP PF16731.5 gi|530548616|ref|YP_008429158.1| - 0.61 9.7 14.6 0.81 9.3 3.9 3.6 3 2 1 4 4 3 0 Glutamic acid/alanine-rich protein of Trypanosoma Allexi_40kDa PF05549.11 gi|530548616|ref|YP_008429158.1| - 0.63 9.5 15.9 0.18 11.3 0.9 3.2 1 1 1 3 3 3 0 Allexivirus 40kDa protein DUF3800 PF12686.7 gi|530548616|ref|YP_008429158.1| - 0.72 10.5 4.0 14 6.4 3.9 2.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3800) GIT_CC PF16559.5 gi|530548616|ref|YP_008429158.1| - 0.9 9.5 13.8 0.32 10.9 0.4 4.7 4 2 0 5 5 5 0 GIT coiled-coil Rho guanine nucleotide exchange factor FlaC_arch PF05377.11 gi|530548616|ref|YP_008429158.1| - 0.92 10.0 35.8 0.11 12.9 1.6 6.1 4 2 1 5 5 5 0 Flagella accessory protein C (FlaC) DUF1664 PF07889.12 gi|530548616|ref|YP_008429158.1| - 1.1 9.3 23.6 0.64 10.1 2.6 4.2 1 1 4 5 5 5 0 Protein of unknown function (DUF1664) CENP-H PF05837.12 gi|530548616|ref|YP_008429158.1| - 1.2 9.6 27.5 2.4 8.6 2.0 3.7 3 1 0 3 3 3 0 Centromere protein H (CENP-H) LXG PF04740.12 gi|530548616|ref|YP_008429158.1| - 1.3 8.7 20.1 0.26 11.0 1.7 4.2 2 1 2 4 4 4 0 LXG domain of WXG superfamily ACP_PD PF04336.12 gi|530548616|ref|YP_008429158.1| - 1.4 9.4 8.9 3.5 8.1 0.3 3.5 3 2 0 3 3 3 0 Acyl carrier protein phosphodiesterase Serine_rich PF08824.10 gi|530548616|ref|YP_008429158.1| - 1.7 8.6 9.9 2.2 8.2 1.1 3.4 3 1 0 3 3 3 0 Serine rich protein interaction domain Seryl_tRNA_N PF02403.22 gi|530548616|ref|YP_008429158.1| - 1.7 8.9 34.7 0.88 9.8 2.9 3.7 3 1 0 3 3 3 0 Seryl-tRNA synthetase N-terminal domain LPP PF04728.13 gi|530548616|ref|YP_008429158.1| - 1.9 8.9 10.1 3.2 8.2 0.6 4.1 4 1 0 4 4 3 0 Lipoprotein leucine-zipper DUF4200 PF13863.6 gi|530548616|ref|YP_008429158.1| - 2 8.9 43.5 0.19 12.1 8.9 3.8 1 1 0 3 3 3 0 Domain of unknown function (DUF4200) Laminin_II PF06009.12 gi|530548616|ref|YP_008429158.1| - 2 8.4 25.2 3.6 7.6 7.9 3.8 1 1 2 3 3 3 0 Laminin Domain II APG17 PF04108.12 gi|530548616|ref|YP_008429158.1| - 2.1 7.4 24.1 65 2.5 16.0 3.0 1 1 1 2 2 2 0 Autophagy protein Apg17 LMBR1 PF04791.16 gi|530548616|ref|YP_008429158.1| - 2.4 7.0 19.8 0.95 8.3 4.6 2.0 1 1 1 2 2 2 0 LMBR1-like membrane protein PRKG1_interact PF15898.5 gi|530548616|ref|YP_008429158.1| - 3 8.8 36.7 3.1 8.8 18.4 4.1 2 2 0 2 2 2 0 cGMP-dependent protein kinase interacting domain FliD_C PF07195.12 gi|530548616|ref|YP_008429158.1| - 3.2 7.1 17.1 4.3 6.7 4.3 3.4 2 1 1 3 3 3 0 Flagellar hook-associated protein 2 C-terminus Tweety PF04906.13 gi|530548616|ref|YP_008429158.1| - 3.3 6.3 10.5 3.5 6.2 1.3 3.2 2 1 3 5 5 5 0 Tweety Atg14 PF10186.9 gi|530548616|ref|YP_008429158.1| - 3.3 6.7 32.0 0.08 12.0 6.6 3.1 1 1 2 3 3 2 0 Vacuolar sorting 38 and autophagy-related subunit 14 FlxA PF14282.6 gi|530548616|ref|YP_008429158.1| - 3.5 7.7 22.7 0.76 9.8 1.4 4.1 4 0 0 4 4 4 0 FlxA-like protein Exonuc_VII_L PF02601.15 gi|530548616|ref|YP_008429158.1| - 5.2 6.5 22.6 6.6e+03 -3.6 22.6 2.3 1 1 0 1 1 0 0 Exonuclease VII, large subunit Herpes_UL25 PF01499.16 gi|530548616|ref|YP_008429158.1| - 5.4 5.4 9.8 0.083 11.4 1.6 1.9 2 0 0 2 2 2 0 Herpesvirus UL25 family Spc7 PF08317.11 gi|530548616|ref|YP_008429158.1| - 5.5 5.8 40.8 3.9 6.3 17.1 3.2 1 1 2 3 3 3 0 Spc7 kinetochore protein DUF489 PF04356.12 gi|530548616|ref|YP_008429158.1| - 5.6 6.9 13.4 1.7 8.6 1.7 3.0 1 1 2 3 3 3 0 Protein of unknown function (DUF489) FapA PF03961.13 gi|530548616|ref|YP_008429158.1| - 6 5.3 38.5 0.38 9.3 12.2 3.3 1 1 2 3 3 3 0 Flagellar Assembly Protein A L31 PF09784.9 gi|530548616|ref|YP_008429158.1| - 6.3 7.3 8.1 4.9 7.6 0.4 2.9 2 1 1 3 3 2 0 Mitochondrial ribosomal protein L31 DUF2802 PF10975.8 gi|530548616|ref|YP_008429158.1| - 7.8 6.7 16.0 4 7.6 1.1 4.4 4 1 1 5 5 4 0 Protein of unknown function (DUF2802) YabA PF06156.13 gi|530548616|ref|YP_008429158.1| - 8.5 7.1 35.3 0.34 11.6 3.9 5.4 1 1 3 4 4 3 0 Initiation control protein YabA GCN5L1 PF06320.13 gi|530548616|ref|YP_008429158.1| - 9.7 6.4 18.1 3.5 7.8 0.2 4.2 2 1 1 4 4 4 0 GCN5-like protein 1 (GCN5L1) HEAT_UF PF18817.1 gi|530548617|ref|YP_008429159.1| - 4.5e-21 74.8 0.8 4.5e-21 74.8 0.8 3.6 4 1 1 5 5 5 1 Repeat of uncharacterized protein PH0542 Adaptin_N PF01602.20 gi|530548617|ref|YP_008429159.1| - 6.8e-10 38.1 4.9 8.9e-10 37.7 4.9 1.1 1 0 0 1 1 1 1 Adaptin N terminal region Cnd1 PF12717.7 gi|530548617|ref|YP_008429159.1| - 2.9e-05 24.2 3.2 0.27 11.3 0.2 3.2 1 1 1 2 2 2 2 non-SMC mitotic condensation complex subunit 1 HEAT_2 PF13646.6 gi|530548617|ref|YP_008429159.1| - 7.7e-05 23.0 0.0 0.017 15.5 0.0 3.1 1 1 3 5 5 5 1 HEAT repeats HEAT PF02985.22 gi|530548617|ref|YP_008429159.1| - 0.00035 20.6 1.1 1.3 9.5 0.1 5.0 7 0 0 7 7 7 1 HEAT repeat Glyco_transf_54 PF04666.13 gi|530548617|ref|YP_008429159.1| - 0.013 14.4 0.1 0.096 11.5 0.0 2.1 2 1 0 2 2 2 0 N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region HEAT_EZ PF13513.6 gi|530548617|ref|YP_008429159.1| - 0.032 14.7 0.1 66 4.2 0.0 4.2 4 1 1 5 5 5 0 HEAT-like repeat LepB_GAP_C PF18227.1 gi|530548617|ref|YP_008429159.1| - 0.041 14.4 1.0 11 6.6 0.0 3.1 3 0 0 3 3 3 0 LepB GAP domain C-terminal subdomain XPC-binding PF09280.11 gi|530548617|ref|YP_008429159.1| - 0.13 12.1 1.1 3 7.6 0.0 3.2 3 1 0 3 3 3 0 XPC-binding domain PQQ PF01011.21 gi|530548618|ref|YP_008429160.1| - 1.7e-09 37.1 8.6 0.053 13.5 0.0 6.5 6 0 0 6 6 6 3 PQQ enzyme repeat PQQ_3 PF13570.6 gi|530548618|ref|YP_008429160.1| - 4.4e-08 33.4 18.2 0.78 10.3 0.0 9.1 8 2 0 8 8 8 4 PQQ-like domain PQQ_2 PF13360.6 gi|530548618|ref|YP_008429160.1| - 4.2e-07 29.8 0.5 0.00085 19.0 0.0 3.3 1 1 0 2 2 2 2 PQQ-like domain DUF3106 PF11304.8 gi|530548619|ref|YP_008429161.1| - 0.11 13.0 0.0 0.15 12.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3106) DUF919 PF06034.11 gi|530548619|ref|YP_008429161.1| - 8.7 6.3 9.1 0.34 10.8 1.0 2.5 3 0 0 3 3 3 0 Nucleopolyhedrovirus protein of unknown function (DUF919) CheF-arch PF04283.12 gi|530548620|ref|YP_008429162.1| - 3.2e-13 49.9 0.0 6.3e-13 49.0 0.0 1.3 1 1 0 1 1 1 1 Chemotaxis signal transduction system protein F from archaea Phasin PF05597.11 gi|530548621|ref|YP_008429163.1| - 0.0018 18.3 8.2 0.013 15.5 0.7 2.3 2 0 0 2 2 2 2 Poly(hydroxyalcanoate) granule associated protein (phasin) DUF4407 PF14362.6 gi|530548621|ref|YP_008429163.1| - 0.17 11.2 4.2 0.41 9.9 0.8 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4407) Sec3_C_2 PF15278.6 gi|530548621|ref|YP_008429163.1| - 0.23 11.8 2.2 0.69 10.3 0.7 2.2 2 0 0 2 2 2 0 Sec3 exocyst complex subunit ZapA PF05164.13 gi|530548621|ref|YP_008429163.1| - 0.51 10.8 8.1 1.8 9.1 0.8 2.7 2 1 0 2 2 2 0 Cell division protein ZapA Syntaxin-6_N PF09177.11 gi|530548621|ref|YP_008429163.1| - 0.72 10.4 6.8 0.55 10.8 0.5 2.5 2 0 0 2 2 2 0 Syntaxin 6, N-terminal UCH PF00443.29 gi|530548621|ref|YP_008429163.1| - 4.8 6.6 6.9 2.8 7.4 3.1 1.8 1 1 0 2 2 2 0 Ubiquitin carboxyl-terminal hydrolase MCPsignal PF00015.21 gi|530548622|ref|YP_008429164.1| - 2.7e-42 144.5 52.2 8.4e-38 129.9 19.1 4.6 1 1 4 5 5 5 3 Methyl-accepting chemotaxis protein (MCP) signalling domain dCache_1 PF02743.18 gi|530548622|ref|YP_008429164.1| - 2.9e-34 119.0 1.5 2.9e-34 119.0 1.5 4.4 2 1 2 4 4 4 1 Cache domain TACC_C PF05010.14 gi|530548622|ref|YP_008429164.1| - 7.6e-09 35.6 35.1 0.0028 17.5 10.3 3.3 2 1 1 3 3 3 3 Transforming acidic coiled-coil-containing protein (TACC), C-terminal dCache_2 PF08269.11 gi|530548622|ref|YP_008429164.1| - 9e-09 34.9 1.4 9e-09 34.9 1.4 4.9 3 3 1 4 4 4 1 Cache domain HAMP PF00672.25 gi|530548622|ref|YP_008429164.1| - 1.4e-08 35.0 3.2 3.1e-06 27.5 0.0 4.6 4 1 1 5 5 3 1 HAMP domain sCache_2 PF17200.4 gi|530548622|ref|YP_008429164.1| - 1.2e-06 28.5 0.1 1.2e-06 28.5 0.1 4.3 5 2 1 6 6 4 1 Single Cache domain 2 DUF948 PF06103.11 gi|530548622|ref|YP_008429164.1| - 5.4e-06 26.6 41.6 0.19 12.0 3.1 6.2 3 2 3 6 6 6 4 Bacterial protein of unknown function (DUF948) Laminin_I PF06008.14 gi|530548622|ref|YP_008429164.1| - 6.2e-06 26.1 41.7 0.0045 16.7 5.0 4.0 1 1 3 4 4 4 3 Laminin Domain I BLOC1_2 PF10046.9 gi|530548622|ref|YP_008429164.1| - 0.00014 22.1 35.5 0.0012 19.0 2.1 5.3 3 2 1 5 5 5 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 sCache_3_2 PF17203.4 gi|530548622|ref|YP_008429164.1| - 0.00032 20.8 9.3 0.019 15.1 0.0 4.1 4 1 1 5 5 3 1 Single cache domain 3 GAPES1 PF17155.4 gi|530548622|ref|YP_008429164.1| - 0.00038 19.9 0.1 0.0017 17.7 0.1 2.2 1 1 0 1 1 1 1 Gammaproteobacterial periplasmic sensor domain ApoLp-III PF07464.11 gi|530548622|ref|YP_008429164.1| - 0.00052 20.1 45.2 0.0042 17.2 11.8 4.8 1 1 4 5 5 5 3 Apolipophorin-III precursor (apoLp-III) HSBP1 PF06825.12 gi|530548622|ref|YP_008429164.1| - 0.00079 19.2 1.9 0.095 12.6 0.2 3.9 3 0 0 3 3 3 1 Heat shock factor binding protein 1 DUF1664 PF07889.12 gi|530548622|ref|YP_008429164.1| - 0.00092 19.2 41.1 0.019 15.0 3.7 5.4 2 2 3 5 5 5 3 Protein of unknown function (DUF1664) Spc7 PF08317.11 gi|530548622|ref|YP_008429164.1| - 0.001 18.0 43.3 0.0052 15.7 13.4 3.5 3 1 1 4 4 4 3 Spc7 kinetochore protein DUF812 PF05667.11 gi|530548622|ref|YP_008429164.1| - 0.0013 17.7 36.0 0.019 13.9 17.2 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF812) EzrA PF06160.12 gi|530548622|ref|YP_008429164.1| - 0.0026 16.0 36.2 0.11 10.7 36.2 2.9 1 1 0 1 1 1 1 Septation ring formation regulator, EzrA Prominin PF05478.11 gi|530548622|ref|YP_008429164.1| - 0.0048 14.9 27.0 0.07 11.1 13.2 2.1 1 1 1 2 2 2 2 Prominin Sec8_exocyst PF04048.14 gi|530548622|ref|YP_008429164.1| - 0.0067 16.3 2.8 0.0067 16.3 2.8 4.2 3 2 1 4 4 3 1 Sec8 exocyst complex component specific domain Laminin_II PF06009.12 gi|530548622|ref|YP_008429164.1| - 0.0068 16.4 47.3 0.014 15.4 5.7 5.5 1 1 6 7 7 7 1 Laminin Domain II Syntaxin-6_N PF09177.11 gi|530548622|ref|YP_008429164.1| - 0.013 16.0 35.5 0.27 11.8 3.1 5.3 2 1 1 4 4 4 0 Syntaxin 6, N-terminal GAF_2 PF13185.6 gi|530548622|ref|YP_008429164.1| - 0.015 15.6 0.7 0.35 11.2 0.0 3.3 3 1 1 4 4 3 0 GAF domain AIP3 PF03915.13 gi|530548622|ref|YP_008429164.1| - 0.022 13.9 35.6 0.15 11.2 8.2 3.6 1 1 2 3 3 3 0 Actin interacting protein 3 FlgN PF05130.12 gi|530548622|ref|YP_008429164.1| - 0.1 13.1 37.4 0.61 10.6 7.0 4.3 1 1 3 4 4 4 0 FlgN protein RecG_N PF17190.4 gi|530548622|ref|YP_008429164.1| - 0.12 13.1 16.6 3.9 8.3 0.2 5.3 2 2 2 5 5 5 0 RecG N-terminal helical domain Fib_alpha PF08702.10 gi|530548622|ref|YP_008429164.1| - 0.16 12.2 30.8 2.3 8.4 1.0 5.0 2 2 3 5 5 5 0 Fibrinogen alpha/beta chain family CheZ PF04344.13 gi|530548622|ref|YP_008429164.1| - 0.18 11.7 30.3 0.19 11.6 7.6 4.3 2 1 3 5 5 5 0 Chemotaxis phosphatase, CheZ DUF3584 PF12128.8 gi|530548622|ref|YP_008429164.1| - 0.18 9.3 32.7 0.26 8.8 31.9 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3584) Mod_r PF07200.13 gi|530548622|ref|YP_008429164.1| - 0.24 11.5 30.5 0.84 9.7 0.9 4.1 2 2 2 4 4 4 0 Modifier of rudimentary (Mod(r)) protein YkyA PF10368.9 gi|530548622|ref|YP_008429164.1| - 0.27 10.9 42.7 0.041 13.6 14.2 4.0 2 2 1 3 3 3 0 Putative cell-wall binding lipoprotein WXG100 PF06013.12 gi|530548622|ref|YP_008429164.1| - 0.51 10.6 27.7 0.27 11.5 2.1 6.6 2 2 4 6 6 6 0 Proteins of 100 residues with WXG ISG65-75 PF11727.8 gi|530548622|ref|YP_008429164.1| - 0.58 9.3 35.2 2.1 7.5 5.3 3.5 1 1 3 4 4 4 0 Invariant surface glycoprotein APG17 PF04108.12 gi|530548622|ref|YP_008429164.1| - 0.61 9.1 37.6 0.22 10.6 14.1 3.9 1 1 2 3 3 3 0 Autophagy protein Apg17 Baculo_PEP_C PF04513.12 gi|530548622|ref|YP_008429164.1| - 0.67 10.0 34.1 15 5.6 3.3 5.2 1 1 3 4 4 4 0 Baculovirus polyhedron envelope protein, PEP, C terminus Goodbye PF17109.5 gi|530548622|ref|YP_008429164.1| - 0.69 10.4 20.1 1.4 9.4 2.4 4.3 1 1 2 4 4 4 0 fungal STAND N-terminal Goodbye domain Sec34 PF04136.15 gi|530548622|ref|YP_008429164.1| - 0.71 9.7 24.4 3.3 7.6 1.8 4.8 3 2 1 5 5 4 0 Sec34-like family RPW8 PF05659.11 gi|530548622|ref|YP_008429164.1| - 0.71 9.6 19.3 0.08 12.6 0.8 4.8 2 2 3 5 5 5 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 Snapin_Pallidin PF14712.6 gi|530548622|ref|YP_008429164.1| - 0.97 9.9 28.3 0.48 10.9 0.9 5.7 4 2 3 7 7 6 0 Snapin/Pallidin FliJ PF02050.16 gi|530548622|ref|YP_008429164.1| - 2.3 8.5 23.9 1.8 8.8 3.7 4.5 2 2 2 4 4 4 0 Flagellar FliJ protein NPV_P10 PF05531.12 gi|530548622|ref|YP_008429164.1| - 2.4 8.7 31.6 4 8.0 0.3 6.2 4 3 2 6 6 6 0 Nucleopolyhedrovirus P10 protein MAD PF05557.13 gi|530548622|ref|YP_008429164.1| - 2.4 6.4 37.5 0.16 10.3 11.4 2.9 1 1 1 3 3 3 0 Mitotic checkpoint protein FUSC PF04632.12 gi|530548622|ref|YP_008429164.1| - 2.8 6.4 14.6 3.4 6.1 7.9 2.2 1 1 0 2 2 2 0 Fusaric acid resistance protein family ING PF12998.7 gi|530548622|ref|YP_008429164.1| - 2.8 8.6 17.7 3.8 8.2 1.4 4.8 2 2 2 4 4 4 0 Inhibitor of growth proteins N-terminal histone-binding ERM PF00769.19 gi|530548622|ref|YP_008429164.1| - 3 7.6 41.9 0.18 11.6 10.5 3.6 1 1 1 3 3 3 0 Ezrin/radixin/moesin family ANAPC4 PF12896.7 gi|530548622|ref|YP_008429164.1| - 3.1 7.2 11.7 0.48 9.9 0.9 4.0 2 2 3 5 5 5 0 Anaphase-promoting complex, cyclosome, subunit 4 TMPIT PF07851.13 gi|530548622|ref|YP_008429164.1| - 3.4 6.8 27.7 0.92 8.7 4.8 3.6 1 1 1 3 3 3 0 TMPIT-like protein T3SSipB PF16535.5 gi|530548622|ref|YP_008429164.1| - 4 7.9 32.4 0.3 11.6 1.1 4.3 2 1 2 4 4 2 0 Type III cell invasion protein SipB Rx_N PF18052.1 gi|530548622|ref|YP_008429164.1| - 4.1 7.7 26.0 2 8.8 4.7 4.6 1 1 1 4 4 4 0 Rx N-terminal domain ATG16 PF08614.11 gi|530548622|ref|YP_008429164.1| - 5.1 7.3 39.9 0.57 10.4 9.0 3.7 1 1 3 4 4 4 0 Autophagy protein 16 (ATG16) Uteroglobin PF01099.17 gi|530548622|ref|YP_008429164.1| - 6.7 7.1 8.8 8 6.9 0.0 4.2 4 2 0 4 4 3 0 Uteroglobin family CorA PF01544.18 gi|530548622|ref|YP_008429164.1| - 6.8 5.9 23.5 3.7 6.8 3.8 3.2 1 1 1 3 3 3 0 CorA-like Mg2+ transporter protein Med9 PF07544.13 gi|530548622|ref|YP_008429164.1| - 9.7 6.4 22.3 0.4 10.8 1.2 5.6 4 3 1 5 5 5 0 RNA polymerase II transcription mediator complex subunit 9 CheD PF03975.13 gi|530548624|ref|YP_008429166.1| - 1.2e-33 115.4 0.3 1.7e-33 115.0 0.3 1.2 1 0 0 1 1 1 1 CheD chemotactic sensory transduction Cu-oxidase_4 PF02578.15 gi|530548624|ref|YP_008429166.1| - 0.14 11.7 0.0 0.16 11.6 0.0 1.2 1 0 0 1 1 1 0 Multi-copper polyphenol oxidoreductase laccase CheC PF04509.12 gi|530548625|ref|YP_008429167.1| - 4.8e-12 45.6 3.0 1.2e-05 25.1 0.3 3.2 3 0 0 3 3 3 2 CheC-like family CheX PF13690.6 gi|530548625|ref|YP_008429167.1| - 6.2e-11 42.3 0.6 6.7e-08 32.6 0.2 2.5 2 1 1 3 3 3 2 Chemotaxis phosphatase CheX Phage_Capsid_P3 PF09018.11 gi|530548625|ref|YP_008429167.1| - 0.04 12.7 0.0 0.054 12.3 0.0 1.2 1 0 0 1 1 1 0 P3 major capsid protein CheC PF04509.12 gi|530548626|ref|YP_008429168.1| - 3.6e-18 65.2 3.6 4.6e-11 42.4 0.8 2.3 2 0 0 2 2 2 2 CheC-like family CheX PF13690.6 gi|530548626|ref|YP_008429168.1| - 1.4e-08 34.8 0.8 6.6e-08 32.6 0.2 2.0 2 0 0 2 2 2 1 Chemotaxis phosphatase CheX YnfE PF17452.2 gi|530548626|ref|YP_008429168.1| - 0.11 12.9 0.0 0.26 11.6 0.0 1.6 1 0 0 1 1 1 0 Uncharacterized YnfE-like Glyoxalase PF00903.25 gi|530548626|ref|YP_008429168.1| - 0.15 12.3 0.0 0.34 11.1 0.0 1.8 1 1 0 1 1 1 0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily P2 PF07194.11 gi|530548627|ref|YP_008429169.1| - 1.1e-39 134.3 7.1 5.6e-23 80.8 1.0 2.9 2 0 0 2 2 2 2 P2 response regulator binding domain CheW PF01584.19 gi|530548627|ref|YP_008429169.1| - 1e-25 90.0 0.8 2.3e-25 88.8 0.8 1.6 1 0 0 1 1 1 1 CheW-like domain Hpt PF01627.23 gi|530548627|ref|YP_008429169.1| - 1.6e-22 79.5 0.6 4.2e-22 78.2 0.0 2.0 2 0 0 2 2 2 1 Hpt domain HATPase_c PF02518.26 gi|530548627|ref|YP_008429169.1| - 2.1e-18 66.9 0.1 9.3e-18 64.8 0.1 2.1 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H-kinase_dim PF02895.14 gi|530548627|ref|YP_008429169.1| - 2.4e-16 59.9 2.3 7.9e-16 58.2 2.3 2.0 1 0 0 1 1 1 1 Signal transducing histidine kinase, homodimeric domain HATPase_c_3 PF13589.6 gi|530548627|ref|YP_008429169.1| - 0.0021 17.9 0.0 0.0057 16.5 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PgdA_N PF18627.1 gi|530548627|ref|YP_008429169.1| - 0.0041 16.8 1.4 0.012 15.3 1.4 1.8 1 0 0 1 1 1 1 Peptidoglycan GlcNAc deacetylase N-terminal domain CheB_methylest PF01339.17 gi|530548628|ref|YP_008429170.1| - 2.8e-62 209.4 0.2 6.9e-62 208.1 0.2 1.7 2 0 0 2 2 2 1 CheB methylesterase Response_reg PF00072.24 gi|530548628|ref|YP_008429170.1| - 1.1e-25 90.0 0.2 6.7e-25 87.4 0.0 2.3 2 0 0 2 2 2 1 Response regulator receiver domain Response_reg PF00072.24 gi|530548629|ref|YP_008429171.1| - 4.2e-32 110.6 1.8 4.7e-32 110.5 1.8 1.0 1 0 0 1 1 1 1 Response regulator receiver domain MTD PF01993.18 gi|530548629|ref|YP_008429171.1| - 0.0032 16.8 0.9 0.0039 16.6 0.9 1.1 1 0 0 1 1 1 1 methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase AlaDh_PNT_N PF05222.15 gi|530548629|ref|YP_008429171.1| - 0.044 14.1 0.4 0.064 13.6 0.4 1.2 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, N-terminal domain CheR PF01739.18 gi|530548630|ref|YP_008429172.1| - 1e-56 191.5 0.0 1.2e-56 191.2 0.0 1.1 1 0 0 1 1 1 1 CheR methyltransferase, SAM binding domain CheR_N PF03705.15 gi|530548630|ref|YP_008429172.1| - 9e-12 44.5 2.5 1.7e-11 43.6 2.5 1.5 1 0 0 1 1 1 1 CheR methyltransferase, all-alpha domain Methyltransf_31 PF13847.6 gi|530548630|ref|YP_008429172.1| - 2.6e-05 24.1 0.0 0.0057 16.5 0.0 2.2 2 0 0 2 2 2 2 Methyltransferase domain Methyltransf_12 PF08242.12 gi|530548630|ref|YP_008429172.1| - 0.00062 20.5 0.0 0.0037 18.0 0.0 2.2 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|530548630|ref|YP_008429172.1| - 0.00077 20.1 0.0 0.052 14.3 0.0 2.4 1 1 1 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|530548630|ref|YP_008429172.1| - 0.00087 19.2 0.0 0.0013 18.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|530548630|ref|YP_008429172.1| - 0.0019 18.8 0.0 0.0075 16.9 0.0 2.1 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_2 PF00891.18 gi|530548630|ref|YP_008429172.1| - 0.0078 15.5 0.0 0.011 15.1 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase domain CheW PF01584.19 gi|530548631|ref|YP_008429173.1| - 1.1e-35 122.2 0.2 1.3e-35 122.0 0.2 1.0 1 0 0 1 1 1 1 CheW-like domain Rsd_AlgQ PF04353.13 gi|530548632|ref|YP_008429174.1| - 0.047 13.7 1.0 0.061 13.3 1.0 1.4 1 1 0 1 1 1 0 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Golgin_A5 PF09787.9 gi|530548633|ref|YP_008429175.1| - 0.0021 17.6 23.3 0.0024 17.4 22.5 1.5 1 1 0 1 1 1 1 Golgin subfamily A member 5 DUF1400 PF07176.11 gi|530548633|ref|YP_008429175.1| - 0.0063 16.8 0.8 0.0063 16.8 0.8 2.2 1 1 1 2 2 2 1 Alpha/beta hydrolase of unknown function (DUF1400) DUF5082 PF16888.5 gi|530548633|ref|YP_008429175.1| - 0.01 16.1 20.0 0.12 12.6 0.7 3.4 1 1 2 3 3 3 0 Domain of unknown function (DUF5082) MscS_porin PF12795.7 gi|530548633|ref|YP_008429175.1| - 0.021 14.4 15.5 0.11 12.1 6.0 2.2 1 1 1 2 2 2 0 Mechanosensitive ion channel porin domain Spc7 PF08317.11 gi|530548633|ref|YP_008429175.1| - 0.022 13.7 26.3 0.025 13.5 24.4 1.8 1 1 0 1 1 1 0 Spc7 kinetochore protein Baculo_PEP_C PF04513.12 gi|530548633|ref|YP_008429175.1| - 0.031 14.3 5.7 1.3 9.1 0.4 2.7 1 1 1 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus ApoO PF09769.9 gi|530548633|ref|YP_008429175.1| - 0.073 13.0 4.0 6.5 6.7 1.3 3.0 1 1 1 2 2 2 0 Apolipoprotein O DUF883 PF05957.13 gi|530548633|ref|YP_008429175.1| - 0.1 13.2 5.7 9.4 6.9 0.1 3.7 3 1 0 3 3 3 0 Bacterial protein of unknown function (DUF883) DUF948 PF06103.11 gi|530548633|ref|YP_008429175.1| - 0.29 11.4 6.6 1.5 9.2 1.4 2.7 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF948) SidE PF12252.8 gi|530548633|ref|YP_008429175.1| - 0.32 8.5 16.8 0.44 8.0 16.8 1.3 1 0 0 1 1 1 0 Dot/Icm substrate protein AI-2E_transport PF01594.16 gi|530548633|ref|YP_008429175.1| - 0.33 10.0 1.0 0.48 9.5 0.3 1.6 1 1 1 2 2 2 0 AI-2E family transporter NPV_P10 PF05531.12 gi|530548633|ref|YP_008429175.1| - 0.35 11.4 9.3 1.7 9.1 2.6 3.1 2 1 0 2 2 2 0 Nucleopolyhedrovirus P10 protein DUF3573 PF12097.8 gi|530548633|ref|YP_008429175.1| - 0.43 9.3 4.1 0.37 9.6 3.2 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3573) Prominin PF05478.11 gi|530548633|ref|YP_008429175.1| - 0.59 8.0 16.9 0.28 9.1 14.3 1.7 1 1 0 2 2 2 0 Prominin OmpH PF03938.14 gi|530548633|ref|YP_008429175.1| - 0.61 10.4 22.8 1.4 9.3 5.1 2.5 1 1 1 2 2 2 0 Outer membrane protein (OmpH-like) Atg14 PF10186.9 gi|530548633|ref|YP_008429175.1| - 0.66 9.0 15.3 0.95 8.5 15.3 1.3 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 DUF1664 PF07889.12 gi|530548633|ref|YP_008429175.1| - 0.74 9.9 18.0 0.86 9.6 5.2 3.2 1 1 2 3 3 3 0 Protein of unknown function (DUF1664) Fzo_mitofusin PF04799.13 gi|530548633|ref|YP_008429175.1| - 0.92 9.0 18.6 0.77 9.3 5.2 3.2 1 1 2 3 3 3 0 fzo-like conserved region DUF4407 PF14362.6 gi|530548633|ref|YP_008429175.1| - 1.2 8.4 6.3 5.8 6.2 6.3 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) Mt_ATP-synt_D PF05873.12 gi|530548633|ref|YP_008429175.1| - 1.8 8.4 16.4 0.27 11.1 6.0 2.8 1 1 2 3 3 3 0 ATP synthase D chain, mitochondrial (ATP5H) DUF4795 PF16043.5 gi|530548633|ref|YP_008429175.1| - 2 8.0 27.9 90 2.6 27.9 2.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4795) DUF3450 PF11932.8 gi|530548633|ref|YP_008429175.1| - 2 7.6 15.6 4.3 6.6 15.6 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF3450) DLP_helical PF18709.1 gi|530548633|ref|YP_008429175.1| - 3.5 6.7 20.7 0.6 9.3 1.5 3.0 1 1 2 3 3 3 0 Dynamin-like helical domain GIT_CC PF16559.5 gi|530548633|ref|YP_008429175.1| - 3.6 7.5 15.1 0.18 11.7 0.9 3.9 3 2 1 4 4 4 0 GIT coiled-coil Rho guanine nucleotide exchange factor DUF4527 PF15030.6 gi|530548633|ref|YP_008429175.1| - 4 6.8 11.9 2.1 7.7 0.4 3.0 2 1 0 3 3 3 0 Protein of unknown function (DUF4527) Rx_N PF18052.1 gi|530548633|ref|YP_008429175.1| - 6.2 7.2 17.3 1.2 9.4 0.6 3.8 2 1 1 4 4 4 0 Rx N-terminal domain DUF1495 PF07381.11 gi|530548634|ref|YP_008429176.1| - 1.8e-33 114.2 0.8 2.1e-33 114.0 0.8 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) DUF4364 PF14277.6 gi|530548634|ref|YP_008429176.1| - 0.027 14.2 0.1 0.042 13.6 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) DUF505 PF04458.12 gi|530548634|ref|YP_008429176.1| - 0.066 11.6 0.1 0.089 11.1 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF505) HTH_IclR PF09339.10 gi|530548634|ref|YP_008429176.1| - 0.092 12.6 0.1 0.87 9.4 0.0 2.3 2 1 0 2 2 2 0 IclR helix-turn-helix domain Methyltransf_31 PF13847.6 gi|530548635|ref|YP_008429177.1| - 7.9e-16 58.2 0.0 1.3e-15 57.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|530548635|ref|YP_008429177.1| - 3.2e-13 50.2 0.0 1.5e-12 48.1 0.0 2.1 3 0 0 3 3 3 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|530548635|ref|YP_008429177.1| - 1.2e-12 48.3 0.0 2.9e-12 47.1 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|530548635|ref|YP_008429177.1| - 6.5e-12 45.3 0.0 1.7e-11 43.9 0.0 1.6 1 1 1 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_25 PF13649.6 gi|530548635|ref|YP_008429177.1| - 7e-12 45.9 0.0 3.3e-11 43.8 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|530548635|ref|YP_008429177.1| - 2.8e-11 43.5 0.0 6e-11 42.4 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|530548635|ref|YP_008429177.1| - 2e-05 24.4 0.0 3.9e-05 23.5 0.0 1.4 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_2 PF00891.18 gi|530548635|ref|YP_008429177.1| - 0.011 15.0 0.0 0.017 14.4 0.0 1.4 1 0 0 1 1 1 0 O-methyltransferase domain NodS PF05401.11 gi|530548635|ref|YP_008429177.1| - 0.011 15.3 0.0 0.016 14.8 0.0 1.2 1 0 0 1 1 1 0 Nodulation protein S (NodS) Methyltransf_4 PF02390.17 gi|530548635|ref|YP_008429177.1| - 0.032 13.7 0.0 0.17 11.4 0.0 2.1 2 1 0 2 2 2 0 Putative methyltransferase MTS PF05175.14 gi|530548635|ref|YP_008429177.1| - 0.09 12.3 0.0 0.3 10.6 0.0 1.8 1 1 0 1 1 1 0 Methyltransferase small domain Arch_flagellin PF01917.16 gi|530548636|ref|YP_008429178.1| - 6e-46 156.6 10.2 6.1e-45 153.4 10.2 2.1 1 1 0 1 1 1 1 Archaebacterial flagellin WVELL PF14043.6 gi|530548636|ref|YP_008429178.1| - 0.12 12.2 0.1 0.27 11.1 0.1 1.5 1 0 0 1 1 1 0 WVELL protein Arch_flagellin PF01917.16 gi|530548637|ref|YP_008429179.1| - 3.1e-43 147.8 2.0 4.2e-43 147.4 2.0 1.2 1 0 0 1 1 1 1 Archaebacterial flagellin DUF4330 PF14221.6 gi|530548637|ref|YP_008429179.1| - 0.044 14.0 0.3 0.078 13.2 0.3 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4330) BNR_4 PF15892.5 gi|530548637|ref|YP_008429179.1| - 0.093 12.1 0.0 0.13 11.6 0.0 1.2 1 0 0 1 1 1 0 BNR repeat-containing family member FlaC_arch PF05377.11 gi|530548638|ref|YP_008429180.1| - 1.2e-19 70.4 17.6 2e-18 66.5 3.8 3.3 2 1 1 3 3 3 2 Flagella accessory protein C (FlaC) EzrA PF06160.12 gi|530548638|ref|YP_008429180.1| - 8.4e-05 20.9 3.2 8.4e-05 20.9 3.2 2.5 1 1 1 2 2 2 1 Septation ring formation regulator, EzrA Laminin_II PF06009.12 gi|530548638|ref|YP_008429180.1| - 0.00022 21.2 7.9 0.00071 19.6 6.8 2.2 1 1 0 1 1 1 1 Laminin Domain II GAS PF13851.6 gi|530548638|ref|YP_008429180.1| - 0.0013 18.2 17.1 0.012 14.9 4.3 2.0 1 1 1 2 2 2 2 Growth-arrest specific micro-tubule binding DUF1664 PF07889.12 gi|530548638|ref|YP_008429180.1| - 0.0016 18.5 12.1 0.054 13.5 5.5 2.2 1 1 1 2 2 2 2 Protein of unknown function (DUF1664) Fez1 PF06818.15 gi|530548638|ref|YP_008429180.1| - 0.0017 18.9 12.0 0.0022 18.5 12.0 1.1 1 0 0 1 1 1 1 Fez1 CENP-F_leu_zip PF10473.9 gi|530548638|ref|YP_008429180.1| - 0.0025 17.8 21.9 0.26 11.3 17.0 2.1 1 1 1 2 2 2 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 TPR_MLP1_2 PF07926.12 gi|530548638|ref|YP_008429180.1| - 0.0029 17.7 5.4 0.0029 17.7 5.4 2.8 1 1 1 2 2 2 1 TPR/MLP1/MLP2-like protein Phage_GPO PF05929.11 gi|530548638|ref|YP_008429180.1| - 0.003 17.3 7.7 0.23 11.0 0.6 2.0 1 1 1 2 2 2 2 Phage capsid scaffolding protein (GPO) serine peptidase Tektin PF03148.14 gi|530548638|ref|YP_008429180.1| - 0.0038 16.0 15.3 0.093 11.5 7.8 2.0 1 1 1 2 2 2 2 Tektin family Spc7 PF08317.11 gi|530548638|ref|YP_008429180.1| - 0.004 16.1 18.2 0.071 12.0 10.6 2.0 1 1 1 2 2 2 2 Spc7 kinetochore protein Pterin_bind PF00809.22 gi|530548638|ref|YP_008429180.1| - 0.0044 16.7 2.6 0.011 15.4 2.6 1.8 1 1 0 1 1 1 1 Pterin binding enzyme DUF211 PF02680.14 gi|530548638|ref|YP_008429180.1| - 0.0048 17.0 4.5 0.018 15.2 0.9 2.2 2 0 0 2 2 2 1 Uncharacterized ArCR, COG1888 DHR10 PF18595.1 gi|530548638|ref|YP_008429180.1| - 0.005 16.9 8.3 0.005 16.9 8.3 2.2 1 1 1 2 2 2 1 Designed helical repeat protein 10 domain Exonuc_VII_L PF02601.15 gi|530548638|ref|YP_008429180.1| - 0.0058 16.2 2.7 0.0076 15.9 2.7 1.2 1 0 0 1 1 1 1 Exonuclease VII, large subunit Fib_alpha PF08702.10 gi|530548638|ref|YP_008429180.1| - 0.0072 16.5 14.1 0.03 14.5 5.4 2.4 1 1 2 3 3 3 2 Fibrinogen alpha/beta chain family Baculo_PEP_C PF04513.12 gi|530548638|ref|YP_008429180.1| - 0.0073 16.4 1.5 0.018 15.0 1.3 1.8 1 1 1 2 2 2 2 Baculovirus polyhedron envelope protein, PEP, C terminus LPP PF04728.13 gi|530548638|ref|YP_008429180.1| - 0.012 16.0 2.5 4 7.9 0.4 2.9 2 2 0 2 2 2 0 Lipoprotein leucine-zipper Sec34 PF04136.15 gi|530548638|ref|YP_008429180.1| - 0.013 15.4 7.0 0.029 14.3 4.7 2.4 1 1 0 1 1 1 0 Sec34-like family Med30 PF11315.8 gi|530548638|ref|YP_008429180.1| - 0.016 15.4 13.7 0.021 15.0 13.7 1.1 1 0 0 1 1 1 0 Mediator complex subunit 30 BLOC1_2 PF10046.9 gi|530548638|ref|YP_008429180.1| - 0.018 15.3 5.2 0.018 15.3 5.2 2.2 1 1 1 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 IFT57 PF10498.9 gi|530548638|ref|YP_008429180.1| - 0.025 13.6 16.1 0.044 12.8 16.1 1.4 1 1 0 1 1 1 0 Intra-flagellar transport protein 57 Csm1_N PF18504.1 gi|530548638|ref|YP_008429180.1| - 0.025 14.9 1.1 0.025 14.9 1.1 3.4 2 1 2 4 4 4 0 Csm1 N-terminal domain DUF4618 PF15397.6 gi|530548638|ref|YP_008429180.1| - 0.032 13.6 16.9 0.82 9.0 2.6 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4618) ACR_tran PF00873.19 gi|530548638|ref|YP_008429180.1| - 0.041 11.6 4.4 0.047 11.3 4.4 1.0 1 0 0 1 1 1 0 AcrB/AcrD/AcrF family Seryl_tRNA_N PF02403.22 gi|530548638|ref|YP_008429180.1| - 0.042 14.1 16.6 0.28 11.4 1.5 2.5 1 1 1 2 2 2 0 Seryl-tRNA synthetase N-terminal domain DUF948 PF06103.11 gi|530548638|ref|YP_008429180.1| - 0.046 14.0 4.9 1.7 9.0 4.1 2.7 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF948) CALCOCO1 PF07888.11 gi|530548638|ref|YP_008429180.1| - 0.057 12.3 15.5 0.1 11.5 15.6 1.4 1 1 0 1 1 1 0 Calcium binding and coiled-coil domain (CALCOCO1) like PspA_IM30 PF04012.12 gi|530548638|ref|YP_008429180.1| - 0.06 12.9 12.4 0.075 12.6 3.7 2.5 1 1 1 3 3 3 0 PspA/IM30 family DUF2730 PF10805.8 gi|530548638|ref|YP_008429180.1| - 0.067 13.3 12.2 1.8 8.7 0.5 2.7 1 1 1 2 2 2 0 Protein of unknown function (DUF2730) DUF4140 PF13600.6 gi|530548638|ref|YP_008429180.1| - 0.067 13.6 11.8 1.3 9.5 0.1 2.9 2 1 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) HMMR_N PF15905.5 gi|530548638|ref|YP_008429180.1| - 0.07 12.6 18.1 0.11 11.9 18.1 1.3 1 0 0 1 1 1 0 Hyaluronan mediated motility receptor N-terminal DUF745 PF05335.13 gi|530548638|ref|YP_008429180.1| - 0.077 12.7 6.3 0.12 12.1 6.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF745) PIN_8 PF18476.1 gi|530548638|ref|YP_008429180.1| - 0.08 12.8 8.3 0.11 12.4 8.3 1.2 1 0 0 1 1 1 0 PIN like domain COG5 PF10392.9 gi|530548638|ref|YP_008429180.1| - 0.085 13.0 9.3 2.2 8.5 2.7 2.5 1 1 1 2 2 2 0 Golgi transport complex subunit 5 Med9 PF07544.13 gi|530548638|ref|YP_008429180.1| - 0.088 12.9 14.6 1 9.5 0.5 3.2 1 1 2 3 3 3 0 RNA polymerase II transcription mediator complex subunit 9 Tmemb_cc2 PF10267.9 gi|530548638|ref|YP_008429180.1| - 0.1 11.7 19.3 0.077 12.1 12.5 2.0 1 1 1 2 2 2 0 Predicted transmembrane and coiled-coil 2 protein FPP PF05911.11 gi|530548638|ref|YP_008429180.1| - 0.1 10.8 16.8 0.13 10.4 16.8 1.1 1 0 0 1 1 1 0 Filament-like plant protein, long coiled-coil PRP1_N PF06424.12 gi|530548638|ref|YP_008429180.1| - 0.11 12.9 12.7 0.042 14.2 5.9 2.1 1 1 1 2 2 2 0 PRP1 splicing factor, N-terminal Cnn_1N PF07989.11 gi|530548638|ref|YP_008429180.1| - 0.13 12.5 18.3 0.9 9.7 7.2 2.6 1 1 0 2 2 2 0 Centrosomin N-terminal motif 1 Occludin_ELL PF07303.13 gi|530548638|ref|YP_008429180.1| - 0.14 12.9 12.7 0.12 13.1 5.5 2.4 1 1 1 2 2 2 0 Occludin homology domain DUF1917 PF08939.10 gi|530548638|ref|YP_008429180.1| - 0.15 11.9 3.7 0.19 11.6 3.7 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF1917) SKA2 PF16740.5 gi|530548638|ref|YP_008429180.1| - 0.2 11.4 13.3 1.8 8.4 6.6 2.4 1 1 1 2 2 2 0 Spindle and kinetochore-associated protein 2 Prefoldin_2 PF01920.20 gi|530548638|ref|YP_008429180.1| - 0.22 11.5 22.8 0.13 12.2 2.9 3.8 1 1 3 4 4 4 0 Prefoldin subunit TBCC_N PF16752.5 gi|530548638|ref|YP_008429180.1| - 0.22 12.0 12.2 0.23 11.9 5.5 2.2 1 1 1 2 2 2 0 Tubulin-specific chaperone C N-terminal domain DUF4407 PF14362.6 gi|530548638|ref|YP_008429180.1| - 0.25 10.6 2.6 0.49 9.7 2.6 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) FapA PF03961.13 gi|530548638|ref|YP_008429180.1| - 0.25 9.9 15.9 0.025 13.2 8.1 2.0 1 1 1 2 2 2 0 Flagellar Assembly Protein A Phage_GP20 PF06810.11 gi|530548638|ref|YP_008429180.1| - 0.26 11.1 9.2 4 7.2 8.7 2.3 1 1 0 1 1 1 0 Phage minor structural protein GP20 CENP-H PF05837.12 gi|530548638|ref|YP_008429180.1| - 0.27 11.6 16.4 0.049 14.0 3.0 2.1 1 1 1 2 2 2 0 Centromere protein H (CENP-H) XhlA PF10779.9 gi|530548638|ref|YP_008429180.1| - 0.32 11.2 14.3 0.19 11.9 2.4 3.1 2 1 1 3 3 3 0 Haemolysin XhlA HemX PF04375.14 gi|530548638|ref|YP_008429180.1| - 0.32 10.2 9.0 0.16 11.2 2.0 2.0 1 1 1 2 2 2 0 HemX, putative uroporphyrinogen-III C-methyltransferase DUF2203 PF09969.9 gi|530548638|ref|YP_008429180.1| - 0.35 11.6 10.6 0.34 11.6 1.9 2.2 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2203) KxDL PF10241.9 gi|530548638|ref|YP_008429180.1| - 0.37 11.1 8.5 1.3 9.4 0.9 2.8 1 1 2 3 3 3 0 Uncharacterized conserved protein DUF2205 PF10224.9 gi|530548638|ref|YP_008429180.1| - 0.37 10.8 12.8 0.8 9.8 1.1 2.4 1 1 0 2 2 2 0 Short coiled-coil protein DUF4988 PF16378.5 gi|530548638|ref|YP_008429180.1| - 0.37 10.4 5.3 7.8 6.1 0.1 2.5 2 1 1 3 3 3 0 Domain of unknown function ISG65-75 PF11727.8 gi|530548638|ref|YP_008429180.1| - 0.39 9.9 5.0 0.55 9.4 3.5 1.8 1 1 1 2 2 2 0 Invariant surface glycoprotein Hemerythrin PF01814.23 gi|530548638|ref|YP_008429180.1| - 0.4 11.3 6.4 1.1 9.9 6.4 1.8 1 1 0 1 1 1 0 Hemerythrin HHE cation binding domain AAA_13 PF13166.6 gi|530548638|ref|YP_008429180.1| - 0.4 9.3 12.5 0.15 10.7 7.9 1.6 1 1 0 1 1 1 0 AAA domain COG2 PF06148.11 gi|530548638|ref|YP_008429180.1| - 0.42 10.7 12.5 14 5.8 0.2 2.9 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 COG7 PF10191.9 gi|530548638|ref|YP_008429180.1| - 0.44 8.7 9.1 1.5 6.9 9.1 1.8 1 1 0 1 1 1 0 Golgi complex component 7 (COG7) DUF812 PF05667.11 gi|530548638|ref|YP_008429180.1| - 0.45 9.3 20.3 3.8 6.3 20.4 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF812) Type2_restr_D3 PF16902.5 gi|530548638|ref|YP_008429180.1| - 0.45 10.5 0.2 0.45 10.5 0.2 2.5 2 1 0 2 2 2 0 Type-2 restriction enzyme D3 domain CAMP_factor PF07373.11 gi|530548638|ref|YP_008429180.1| - 0.47 10.0 4.9 0.49 10.0 1.0 2.1 1 1 1 2 2 2 0 CAMP factor (Cfa) V_ATPase_I PF01496.19 gi|530548638|ref|YP_008429180.1| - 0.5 8.2 13.6 1.4 6.8 13.7 1.6 1 1 0 1 1 1 0 V-type ATPase 116kDa subunit family DUF16 PF01519.16 gi|530548638|ref|YP_008429180.1| - 0.53 10.8 13.5 1.3 9.5 7.6 2.4 1 1 1 2 2 2 0 Protein of unknown function DUF16 ADIP PF11559.8 gi|530548638|ref|YP_008429180.1| - 0.54 10.3 10.6 1.3 9.1 4.4 2.3 1 1 1 2 2 2 0 Afadin- and alpha -actinin-Binding NPV_P10 PF05531.12 gi|530548638|ref|YP_008429180.1| - 0.54 10.7 7.2 3.5 8.2 1.6 2.7 1 1 1 2 2 2 0 Nucleopolyhedrovirus P10 protein TMPIT PF07851.13 gi|530548638|ref|YP_008429180.1| - 0.59 9.3 12.7 0.56 9.4 9.2 1.9 1 1 1 2 2 2 0 TMPIT-like protein DivIC PF04977.15 gi|530548638|ref|YP_008429180.1| - 0.61 9.9 14.3 0.44 10.3 1.0 2.9 1 1 2 3 3 3 0 Septum formation initiator Peptidase_S46 PF10459.9 gi|530548638|ref|YP_008429180.1| - 0.61 8.7 5.0 0.73 8.4 5.0 1.0 1 0 0 1 1 1 0 Peptidase S46 Prominin PF05478.11 gi|530548638|ref|YP_008429180.1| - 0.61 8.0 7.8 1.5 6.7 7.8 1.5 1 1 0 1 1 1 0 Prominin MCPsignal PF00015.21 gi|530548638|ref|YP_008429180.1| - 0.63 9.8 7.4 0.76 9.6 3.7 2.1 1 1 1 2 2 2 0 Methyl-accepting chemotaxis protein (MCP) signalling domain Rx_N PF18052.1 gi|530548638|ref|YP_008429180.1| - 0.65 10.3 12.8 1.2 9.5 0.7 3.4 1 1 2 3 3 3 0 Rx N-terminal domain DUF5344 PF17279.2 gi|530548638|ref|YP_008429180.1| - 0.66 10.6 12.3 1.9 9.1 0.3 3.4 1 1 1 3 3 3 0 Family of unknown function (DUF5344) DUF5339 PF17274.2 gi|530548638|ref|YP_008429180.1| - 0.69 10.8 7.9 7.5 7.5 1.4 3.2 2 1 0 2 2 2 0 Family of unknown function (DUF5339) DUF4349 PF14257.6 gi|530548638|ref|YP_008429180.1| - 0.7 9.3 15.1 0.87 9.0 0.4 2.9 2 1 1 3 3 3 0 Domain of unknown function (DUF4349) HIP1_clath_bdg PF16515.5 gi|530548638|ref|YP_008429180.1| - 0.74 10.5 18.9 0.27 11.9 6.8 2.6 1 1 1 2 2 2 0 Clathrin-binding domain of Huntingtin-interacting protein 1 THOC7 PF05615.13 gi|530548638|ref|YP_008429180.1| - 0.74 10.1 14.4 1.9 8.8 14.2 1.8 1 1 1 2 2 2 0 Tho complex subunit 7 ABC_tran_CTD PF16326.5 gi|530548638|ref|YP_008429180.1| - 0.86 9.9 21.4 3.5 7.9 3.3 3.3 2 1 0 2 2 2 0 ABC transporter C-terminal domain ATG16 PF08614.11 gi|530548638|ref|YP_008429180.1| - 0.86 9.8 14.7 7.4 6.7 14.8 1.9 1 1 0 1 1 1 0 Autophagy protein 16 (ATG16) End3 PF12761.7 gi|530548638|ref|YP_008429180.1| - 0.93 9.6 13.7 2.1 8.4 6.3 2.2 1 1 0 2 2 2 0 Actin cytoskeleton-regulatory complex protein END3 HeLo PF14479.6 gi|530548638|ref|YP_008429180.1| - 0.94 9.3 5.8 1.4 8.7 5.8 1.2 1 0 0 1 1 1 0 Prion-inhibition and propagation DUF3349 PF11829.8 gi|530548638|ref|YP_008429180.1| - 0.95 10.3 6.1 7.7 7.4 0.4 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF3349) Prefoldin PF02996.17 gi|530548638|ref|YP_008429180.1| - 1.1 9.2 14.1 0.15 11.9 0.9 3.2 2 1 1 3 3 3 0 Prefoldin subunit DLP_helical PF18709.1 gi|530548638|ref|YP_008429180.1| - 1.2 8.3 12.4 1.2 8.3 6.9 2.1 1 1 1 2 2 2 0 Dynamin-like helical domain MSA-2c PF12238.8 gi|530548638|ref|YP_008429180.1| - 1.2 9.1 4.0 1.4 8.9 3.0 1.5 1 1 0 1 1 1 0 Merozoite surface antigen 2c DUF3450 PF11932.8 gi|530548638|ref|YP_008429180.1| - 1.3 8.2 15.5 2.9 7.2 9.6 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF3450) APG6_N PF17675.1 gi|530548638|ref|YP_008429180.1| - 1.4 9.5 21.3 85 3.7 21.4 2.2 1 1 0 1 1 1 0 Apg6 coiled-coil region Uso1_p115_C PF04871.13 gi|530548638|ref|YP_008429180.1| - 1.4 9.3 15.0 6.7 7.1 8.4 2.1 1 1 1 2 2 2 0 Uso1 / p115 like vesicle tethering protein, C terminal region MutS_III PF05192.18 gi|530548638|ref|YP_008429180.1| - 1.4 9.1 3.6 2 8.6 3.6 1.3 1 0 0 1 1 1 0 MutS domain III TSC22 PF01166.18 gi|530548638|ref|YP_008429180.1| - 1.5 9.2 18.3 0.41 11.0 1.4 4.1 1 1 2 3 3 3 0 TSC-22/dip/bun family DUF5082 PF16888.5 gi|530548638|ref|YP_008429180.1| - 1.5 9.1 16.4 1.2 9.4 0.9 3.3 1 1 2 3 3 3 0 Domain of unknown function (DUF5082) DUF4795 PF16043.5 gi|530548638|ref|YP_008429180.1| - 1.7 8.2 19.1 0.54 9.8 12.3 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4795) Phlebovirus_NSM PF07246.11 gi|530548638|ref|YP_008429180.1| - 1.7 7.9 9.5 8.4 5.7 9.2 1.9 1 1 0 1 1 1 0 Phlebovirus nonstructural protein NS-M DELLA PF12041.8 gi|530548638|ref|YP_008429180.1| - 1.9 8.5 6.0 4 7.4 0.0 3.1 3 1 0 3 3 3 0 Transcriptional regulator DELLA protein N terminal MapZ_EC1 PF18041.1 gi|530548638|ref|YP_008429180.1| - 2 8.7 6.3 1.1 9.5 1.3 2.2 1 1 0 2 2 2 0 MapZ extracellular domain 1 DUF244 PF03112.14 gi|530548638|ref|YP_008429180.1| - 2.1 8.2 7.4 2.8 7.8 2.9 2.3 1 1 1 2 2 2 0 Uncharacterized protein family (ORF7) DUF Cob_adeno_trans PF01923.18 gi|530548638|ref|YP_008429180.1| - 2.1 8.4 8.7 1.8 8.7 2.8 2.5 1 1 2 3 3 3 0 Cobalamin adenosyltransferase FAM76 PF16046.5 gi|530548638|ref|YP_008429180.1| - 2.1 7.6 10.3 2.9 7.2 10.3 1.1 1 0 0 1 1 1 0 FAM76 protein YabA PF06156.13 gi|530548638|ref|YP_008429180.1| - 2.2 9.0 15.9 7.5e+02 0.8 15.9 2.8 1 1 0 1 1 1 0 Initiation control protein YabA Spc24 PF08286.11 gi|530548638|ref|YP_008429180.1| - 2.4 8.4 14.8 1.9 8.8 1.2 3.1 1 1 2 3 3 3 0 Spc24 subunit of Ndc80 DUF4446 PF14584.6 gi|530548638|ref|YP_008429180.1| - 2.6 8.0 11.0 6.5 6.7 4.0 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF4446) HAP1_N PF04849.13 gi|530548638|ref|YP_008429180.1| - 2.7 7.1 19.6 4.7 6.3 19.4 1.4 1 1 0 1 1 1 0 HAP1 N-terminal conserved region Halogen_Hydrol PF10112.9 gi|530548638|ref|YP_008429180.1| - 2.7 8.0 12.4 1.6 8.7 0.4 3.0 1 1 2 3 3 3 0 5-bromo-4-chloroindolyl phosphate hydrolysis protein Snapin_Pallidin PF14712.6 gi|530548638|ref|YP_008429180.1| - 2.9 8.4 15.5 2.2 8.8 5.0 2.4 1 1 1 2 2 2 0 Snapin/Pallidin FlxA PF14282.6 gi|530548638|ref|YP_008429180.1| - 3 7.9 15.7 0.71 9.9 3.9 2.9 1 1 2 3 3 3 0 FlxA-like protein Enkurin PF13864.6 gi|530548638|ref|YP_008429180.1| - 3 8.3 19.0 3 8.4 10.3 2.3 1 1 1 2 2 2 0 Calmodulin-binding Atg14 PF10186.9 gi|530548638|ref|YP_008429180.1| - 3.2 6.8 12.3 12 4.9 12.3 1.7 1 1 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 SlyX PF04102.12 gi|530548638|ref|YP_008429180.1| - 3.9 8.2 16.5 6.9 7.4 1.2 3.1 1 1 1 2 2 2 0 SlyX MetOD2 PF18548.1 gi|530548638|ref|YP_008429180.1| - 4.1 7.6 18.4 1.5 8.9 4.4 3.0 1 1 2 3 3 3 0 Metanogen output domain 2 TolA_bind_tri PF16331.5 gi|530548638|ref|YP_008429180.1| - 4.1 7.5 18.0 17 5.6 7.9 2.6 1 1 1 2 2 2 0 TolA binding protein trimerisation Goodbye PF17109.5 gi|530548638|ref|YP_008429180.1| - 4.4 7.8 8.3 2.7 8.5 0.4 2.9 1 1 2 3 3 3 0 fungal STAND N-terminal Goodbye domain Nup88 PF10168.9 gi|530548638|ref|YP_008429180.1| - 5 4.8 17.7 8 4.1 17.7 1.3 1 1 0 1 1 1 0 Nuclear pore component DUF241 PF03087.14 gi|530548638|ref|YP_008429180.1| - 6.7 6.5 14.7 0.36 10.6 6.3 2.4 1 1 0 2 2 2 0 Arabidopsis protein of unknown function DASH_Dam1 PF08653.10 gi|530548638|ref|YP_008429180.1| - 6.7 6.6 7.0 5.5 6.9 0.1 3.1 3 1 0 3 3 3 0 DASH complex subunit Dam1 DUF4763 PF15960.5 gi|530548638|ref|YP_008429180.1| - 7.1 5.9 17.8 54 3.0 17.8 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4763) DUF4559 PF15112.6 gi|530548638|ref|YP_008429180.1| - 7.8 6.1 12.0 9.9 5.7 12.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4559) DUF2508 PF10704.9 gi|530548638|ref|YP_008429180.1| - 7.9 6.7 16.4 1.2 9.3 2.5 3.4 1 1 1 3 3 3 0 Protein of unknown function (DUF2508) Cauli_AT PF03233.13 gi|530548638|ref|YP_008429180.1| - 7.9 6.4 14.8 10 6.1 5.5 2.2 1 1 1 2 2 2 0 Aphid transmission protein GrpE PF01025.19 gi|530548638|ref|YP_008429180.1| - 8.4 6.0 15.7 13 5.4 1.3 2.4 1 1 1 2 2 2 0 GrpE ZapB PF06005.12 gi|530548638|ref|YP_008429180.1| - 8.5 6.9 21.1 0.73 10.3 6.9 3.0 1 1 1 2 2 2 0 Cell division protein ZapB USP8_interact PF08941.10 gi|530548638|ref|YP_008429180.1| - 8.7 6.1 9.4 18 5.1 0.4 2.4 1 1 1 2 2 2 0 USP8 interacting bZIP_1 PF00170.21 gi|530548638|ref|YP_008429180.1| - 8.9 6.5 16.9 2.4 8.3 2.1 3.3 2 1 0 2 2 2 0 bZIP transcription factor UPF0242 PF06785.11 gi|530548638|ref|YP_008429180.1| - 9.1 6.3 21.7 1.1e+02 2.8 21.7 2.0 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus Bap31_Bap29_C PF18035.1 gi|530548638|ref|YP_008429180.1| - 9.1 6.4 15.2 1.8 8.6 0.3 3.9 1 1 3 4 4 4 0 Bap31/Bap29 cytoplasmic coiled-coil domain Baculo_PEP_C PF04513.12 gi|530548639|ref|YP_008429181.1| - 2.8e-06 27.4 3.8 0.014 15.5 0.6 2.8 1 1 2 3 3 3 2 Baculovirus polyhedron envelope protein, PEP, C terminus IFT57 PF10498.9 gi|530548639|ref|YP_008429181.1| - 2.5e-05 23.4 6.1 2.5e-05 23.4 6.1 2.0 1 1 1 2 2 2 1 Intra-flagellar transport protein 57 Apolipoprotein PF01442.18 gi|530548639|ref|YP_008429181.1| - 4.9e-05 23.3 15.5 9.8e-05 22.3 15.5 1.5 1 1 0 1 1 1 1 Apolipoprotein A1/A4/E domain NPV_P10 PF05531.12 gi|530548639|ref|YP_008429181.1| - 0.00011 22.5 7.9 0.2 12.2 1.9 3.4 1 1 1 3 3 3 1 Nucleopolyhedrovirus P10 protein H-kinase_dim PF02895.14 gi|530548639|ref|YP_008429181.1| - 0.00038 20.8 7.3 0.0027 18.1 5.3 2.8 2 1 0 2 2 2 1 Signal transducing histidine kinase, homodimeric domain Nup54 PF13874.6 gi|530548639|ref|YP_008429181.1| - 0.00057 20.0 9.1 0.00066 19.8 7.2 1.9 1 1 1 2 2 2 1 Nucleoporin complex subunit 54 HSBP1 PF06825.12 gi|530548639|ref|YP_008429181.1| - 0.0006 19.6 7.9 0.084 12.7 0.0 4.0 3 1 1 4 4 4 1 Heat shock factor binding protein 1 ZapB PF06005.12 gi|530548639|ref|YP_008429181.1| - 0.0013 19.2 21.0 0.003 18.0 0.8 3.4 1 1 2 3 3 3 1 Cell division protein ZapB CLZ PF16526.5 gi|530548639|ref|YP_008429181.1| - 0.002 18.5 14.0 0.036 14.4 1.5 3.4 1 1 2 3 3 3 1 C-terminal leucine zipper domain of cyclic nucleotide-gated channels Exonuc_VII_L PF02601.15 gi|530548639|ref|YP_008429181.1| - 0.0023 17.5 4.9 0.0033 17.0 4.9 1.2 1 0 0 1 1 1 1 Exonuclease VII, large subunit SPACA9 PF15120.6 gi|530548639|ref|YP_008429181.1| - 0.0034 17.2 1.0 0.0078 16.0 0.6 1.7 2 0 0 2 2 1 1 Sperm acrosome-associated protein 9 DUF812 PF05667.11 gi|530548639|ref|YP_008429181.1| - 0.0037 16.2 12.2 0.0045 15.9 12.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF812) AAA_15 PF13175.6 gi|530548639|ref|YP_008429181.1| - 0.004 16.9 9.6 0.0045 16.7 9.6 1.1 1 0 0 1 1 1 1 AAA ATPase domain Occludin_ELL PF07303.13 gi|530548639|ref|YP_008429181.1| - 0.0042 17.8 9.4 1.3 9.8 0.2 2.8 1 1 2 3 3 3 2 Occludin homology domain AAA_13 PF13166.6 gi|530548639|ref|YP_008429181.1| - 0.0043 15.8 10.6 0.0052 15.5 10.6 1.0 1 0 0 1 1 1 1 AAA domain Prominin PF05478.11 gi|530548639|ref|YP_008429181.1| - 0.0054 14.8 4.8 0.0064 14.5 4.8 1.2 1 0 0 1 1 1 1 Prominin ABC_tran_CTD PF16326.5 gi|530548639|ref|YP_008429181.1| - 0.0057 16.9 25.2 0.7 10.2 17.9 3.6 1 1 2 3 3 3 1 ABC transporter C-terminal domain DUF2397 PF09660.10 gi|530548639|ref|YP_008429181.1| - 0.0061 15.5 2.0 0.0061 15.5 2.0 1.6 1 1 1 2 2 2 1 Protein of unknown function (DUF2397) Spc7 PF08317.11 gi|530548639|ref|YP_008429181.1| - 0.0065 15.4 17.8 0.0075 15.2 17.3 1.4 1 1 0 1 1 1 1 Spc7 kinetochore protein DUF1664 PF07889.12 gi|530548639|ref|YP_008429181.1| - 0.0066 16.5 10.8 0.013 15.6 6.1 2.3 1 1 1 2 2 2 1 Protein of unknown function (DUF1664) MscS_porin PF12795.7 gi|530548639|ref|YP_008429181.1| - 0.0066 16.0 14.1 0.024 14.2 1.5 2.3 1 1 1 2 2 2 1 Mechanosensitive ion channel porin domain HrpB7 PF09486.10 gi|530548639|ref|YP_008429181.1| - 0.0082 16.5 2.5 0.0082 16.5 2.5 2.4 1 1 1 2 2 2 1 Bacterial type III secretion protein (HrpB7) WXG100 PF06013.12 gi|530548639|ref|YP_008429181.1| - 0.009 16.2 1.4 2.3 8.5 0.4 3.7 1 1 1 2 2 2 0 Proteins of 100 residues with WXG Nsp1_C PF05064.13 gi|530548639|ref|YP_008429181.1| - 0.01 15.6 12.0 0.29 11.0 12.0 2.2 1 1 0 1 1 1 0 Nsp1-like C-terminal region Peptidase_S46 PF10459.9 gi|530548639|ref|YP_008429181.1| - 0.011 14.5 5.1 0.013 14.2 5.1 1.0 1 0 0 1 1 1 0 Peptidase S46 RmuC PF02646.16 gi|530548639|ref|YP_008429181.1| - 0.011 14.9 8.9 0.092 11.9 3.5 2.3 1 1 1 2 2 2 0 RmuC family Syntaxin-6_N PF09177.11 gi|530548639|ref|YP_008429181.1| - 0.014 15.9 11.3 0.024 15.2 3.1 2.6 1 1 1 2 2 2 0 Syntaxin 6, N-terminal Salt_tol_Pase PF09506.10 gi|530548639|ref|YP_008429181.1| - 0.015 14.0 1.1 0.044 12.6 0.1 1.9 1 1 0 2 2 2 0 Glucosylglycerol-phosphate phosphatase (Salt_tol_Pase) MCPsignal PF00015.21 gi|530548639|ref|YP_008429181.1| - 0.016 15.0 3.3 0.15 11.9 0.2 2.1 1 1 1 2 2 2 0 Methyl-accepting chemotaxis protein (MCP) signalling domain Med10 PF09748.9 gi|530548639|ref|YP_008429181.1| - 0.018 15.0 4.1 1.8 8.6 3.9 2.5 1 1 0 1 1 1 0 Transcription factor subunit Med10 of Mediator complex Atg14 PF10186.9 gi|530548639|ref|YP_008429181.1| - 0.018 14.1 12.7 0.11 11.5 12.7 2.0 1 1 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 CRISPR_Cas9_WED PF18061.1 gi|530548639|ref|YP_008429181.1| - 0.021 14.9 4.2 0.029 14.5 0.1 2.1 2 0 0 2 2 2 0 CRISPR-Cas9 WED domain HLH PF00010.26 gi|530548639|ref|YP_008429181.1| - 0.023 14.6 0.0 3.6 7.6 0.0 3.6 1 1 2 3 3 3 0 Helix-loop-helix DNA-binding domain GAS PF13851.6 gi|530548639|ref|YP_008429181.1| - 0.025 14.0 16.7 0.16 11.3 16.0 1.9 1 1 0 1 1 1 0 Growth-arrest specific micro-tubule binding Syntaxin_2 PF14523.6 gi|530548639|ref|YP_008429181.1| - 0.027 14.9 6.9 1 9.7 1.1 2.7 1 1 1 2 2 2 0 Syntaxin-like protein DUF885 PF05960.11 gi|530548639|ref|YP_008429181.1| - 0.032 13.9 2.0 0.047 13.3 2.0 1.2 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF885) V-SNARE_C PF12352.8 gi|530548639|ref|YP_008429181.1| - 0.034 14.4 0.6 0.22 11.8 0.3 2.5 3 0 0 3 3 1 0 Snare region anchored in the vesicle membrane C-terminus DUF848 PF05852.11 gi|530548639|ref|YP_008429181.1| - 0.034 14.2 16.6 0.23 11.5 9.9 2.6 1 1 2 3 3 3 0 Gammaherpesvirus protein of unknown function (DUF848) XRCC4 PF06632.12 gi|530548639|ref|YP_008429181.1| - 0.034 13.0 13.4 0.084 11.7 13.4 1.6 1 1 0 1 1 1 0 DNA double-strand break repair and V(D)J recombination protein XRCC4 Sec8_exocyst PF04048.14 gi|530548639|ref|YP_008429181.1| - 0.037 13.9 9.3 0.086 12.7 6.5 2.1 1 1 1 2 2 2 0 Sec8 exocyst complex component specific domain YtxH PF12732.7 gi|530548639|ref|YP_008429181.1| - 0.037 14.5 11.9 1.7e+02 2.8 11.9 3.5 1 1 0 1 1 1 0 YtxH-like protein Allexi_40kDa PF05549.11 gi|530548639|ref|YP_008429181.1| - 0.051 13.1 7.8 0.89 9.0 3.1 2.0 1 1 1 2 2 2 0 Allexivirus 40kDa protein phiKZ_IP PF12699.7 gi|530548639|ref|YP_008429181.1| - 0.053 12.7 9.1 1.6 7.8 0.1 2.3 1 1 1 2 2 2 0 phiKZ-like phage internal head proteins Snapin_Pallidin PF14712.6 gi|530548639|ref|YP_008429181.1| - 0.063 13.7 13.3 0.48 10.9 4.9 2.7 1 1 2 3 3 3 0 Snapin/Pallidin Nup88 PF10168.9 gi|530548639|ref|YP_008429181.1| - 0.066 11.0 12.3 0.1 10.4 12.3 1.3 1 0 0 1 1 1 0 Nuclear pore component LPP PF04728.13 gi|530548639|ref|YP_008429181.1| - 0.071 13.5 5.4 7.5 7.0 0.0 3.9 3 2 1 4 4 3 0 Lipoprotein leucine-zipper XhlA PF10779.9 gi|530548639|ref|YP_008429181.1| - 0.079 13.2 14.0 0.83 9.9 4.6 3.4 1 1 2 3 3 3 0 Haemolysin XhlA Phage_GP20 PF06810.11 gi|530548639|ref|YP_008429181.1| - 0.086 12.6 13.2 0.55 10.0 9.9 2.5 1 1 1 2 2 2 0 Phage minor structural protein GP20 Alpha-E PF04168.12 gi|530548639|ref|YP_008429181.1| - 0.087 12.6 5.5 0.78 9.5 2.1 2.0 1 1 1 2 2 2 0 A predicted alpha-helical domain with a conserved ER motif. DUF948 PF06103.11 gi|530548639|ref|YP_008429181.1| - 0.1 12.9 3.3 1.3 9.3 0.4 2.9 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF948) FlxA PF14282.6 gi|530548639|ref|YP_008429181.1| - 0.11 12.6 15.0 0.12 12.4 8.1 2.4 1 1 1 2 2 2 0 FlxA-like protein BLOC1_2 PF10046.9 gi|530548639|ref|YP_008429181.1| - 0.11 12.9 12.7 2.3 8.6 0.4 2.5 1 1 1 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 HAUS6_N PF14661.6 gi|530548639|ref|YP_008429181.1| - 0.11 12.0 7.6 0.24 11.0 7.5 1.6 1 1 0 1 1 1 0 HAUS augmin-like complex subunit 6 N-terminus Acetyltransf_16 PF05301.11 gi|530548639|ref|YP_008429181.1| - 0.12 12.2 1.6 0.77 9.5 0.1 2.4 1 1 0 2 2 2 0 GNAT acetyltransferase, Mec-17 KxDL PF10241.9 gi|530548639|ref|YP_008429181.1| - 0.13 12.6 6.2 1.9 8.8 1.8 2.8 1 1 1 2 2 2 0 Uncharacterized conserved protein ALMT PF11744.8 gi|530548639|ref|YP_008429181.1| - 0.13 11.1 2.2 0.14 10.9 2.2 1.2 1 0 0 1 1 1 0 Aluminium activated malate transporter DUF2333 PF10095.9 gi|530548639|ref|YP_008429181.1| - 0.15 11.0 1.5 0.7 8.8 0.7 1.9 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2333) UPF0184 PF03670.13 gi|530548639|ref|YP_008429181.1| - 0.15 12.5 0.5 0.15 12.5 0.5 2.9 2 2 1 3 3 2 0 Uncharacterised protein family (UPF0184) MbeD_MobD PF04899.12 gi|530548639|ref|YP_008429181.1| - 0.16 12.1 3.5 1.5 9.0 0.2 3.0 2 1 1 3 3 2 0 MbeD/MobD like DHR10 PF18595.1 gi|530548639|ref|YP_008429181.1| - 0.16 12.0 17.7 1.7 8.8 8.2 3.4 1 1 1 2 2 2 0 Designed helical repeat protein 10 domain Mer2 PF09074.10 gi|530548639|ref|YP_008429181.1| - 0.16 11.7 9.9 0.96 9.2 6.6 2.3 1 1 0 1 1 1 0 Mer2 V_ATPase_I PF01496.19 gi|530548639|ref|YP_008429181.1| - 0.18 9.7 6.5 0.23 9.3 6.5 1.2 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family ZnuA PF01297.17 gi|530548639|ref|YP_008429181.1| - 0.19 11.1 4.9 2.8 7.3 2.1 2.4 1 1 1 2 2 2 0 Zinc-uptake complex component A periplasmic Fmp27_WPPW PF10359.9 gi|530548639|ref|YP_008429181.1| - 0.21 10.4 13.2 0.098 11.5 7.5 2.0 1 1 1 2 2 2 0 RNA pol II promoter Fmp27 protein domain Spectrin PF00435.21 gi|530548639|ref|YP_008429181.1| - 0.23 11.9 12.4 3.9 8.0 9.3 2.6 1 1 2 3 3 2 0 Spectrin repeat TMPIT PF07851.13 gi|530548639|ref|YP_008429181.1| - 0.29 10.4 8.3 1.2 8.3 8.3 1.8 1 1 0 1 1 1 0 TMPIT-like protein DUF4795 PF16043.5 gi|530548639|ref|YP_008429181.1| - 0.33 10.5 17.3 11 5.5 17.2 2.2 1 1 0 1 1 1 0 Domain of unknown function (DUF4795) PMC2NT PF08066.12 gi|530548639|ref|YP_008429181.1| - 0.35 11.6 4.6 1.9 9.2 4.4 2.3 1 1 0 1 1 1 0 PMC2NT (NUC016) domain DASH_Duo1 PF08651.10 gi|530548639|ref|YP_008429181.1| - 0.37 10.6 6.3 4.5 7.1 0.3 3.7 1 1 3 4 4 4 0 DASH complex subunit Duo1 Osmo_CC PF08946.10 gi|530548639|ref|YP_008429181.1| - 0.37 11.1 24.2 4 7.8 6.2 4.6 3 2 2 5 5 4 0 Osmosensory transporter coiled coil DUF5344 PF17279.2 gi|530548639|ref|YP_008429181.1| - 0.38 11.3 11.5 0.26 11.9 4.9 3.0 1 1 2 3 3 3 0 Family of unknown function (DUF5344) UTP15_C PF09384.10 gi|530548639|ref|YP_008429181.1| - 0.42 10.3 5.6 1.3 8.7 0.0 2.9 1 1 1 2 2 2 0 UTP15 C terminal HalX PF08663.10 gi|530548639|ref|YP_008429181.1| - 0.42 11.0 0.2 0.42 11.0 0.2 4.2 2 2 2 4 4 4 0 HalX domain Cob_adeno_trans PF01923.18 gi|530548639|ref|YP_008429181.1| - 0.44 10.7 6.4 0.33 11.1 1.3 1.9 1 1 1 2 2 2 0 Cobalamin adenosyltransferase OmpH PF03938.14 gi|530548639|ref|YP_008429181.1| - 0.47 10.8 16.8 0.3 11.4 12.9 2.3 1 1 1 2 2 2 0 Outer membrane protein (OmpH-like) Phage_GPO PF05929.11 gi|530548639|ref|YP_008429181.1| - 0.48 10.0 6.6 0.18 11.4 2.6 1.8 1 1 1 2 2 2 0 Phage capsid scaffolding protein (GPO) serine peptidase Jnk-SapK_ap_N PF09744.9 gi|530548639|ref|YP_008429181.1| - 0.53 10.5 19.3 0.14 12.3 5.5 2.1 1 1 1 2 2 2 0 JNK_SAPK-associated protein-1 Noelin-1 PF12308.8 gi|530548639|ref|YP_008429181.1| - 0.59 10.1 4.2 1.2 9.2 1.2 2.5 1 1 1 2 2 2 0 Neurogenesis glycoprotein DUF16 PF01519.16 gi|530548639|ref|YP_008429181.1| - 0.62 10.6 15.8 2.4e+02 2.2 15.8 3.0 1 1 0 1 1 1 0 Protein of unknown function DUF16 SlyX PF04102.12 gi|530548639|ref|YP_008429181.1| - 0.67 10.6 12.3 5.1 7.8 1.9 3.6 1 1 2 3 3 3 0 SlyX MutS_III PF05192.18 gi|530548639|ref|YP_008429181.1| - 0.74 10.0 7.0 1 9.6 7.0 1.2 1 0 0 1 1 1 0 MutS domain III Uds1 PF15456.6 gi|530548639|ref|YP_008429181.1| - 0.83 9.8 11.0 3.8 7.7 10.4 2.6 1 1 1 2 2 2 0 Up-regulated During Septation FlaC_arch PF05377.11 gi|530548639|ref|YP_008429181.1| - 0.85 10.1 19.5 4.6e+02 1.3 0.2 4.2 1 1 1 2 2 1 0 Flagella accessory protein C (FlaC) DPM3 PF08285.11 gi|530548639|ref|YP_008429181.1| - 1.1 9.5 3.1 1.5 9.1 0.2 2.2 2 0 0 2 2 2 0 Dolichol-phosphate mannosyltransferase subunit 3 (DPM3) DOG1 PF14144.6 gi|530548639|ref|YP_008429181.1| - 1.1 9.6 3.0 10 6.4 0.1 2.9 2 1 1 3 3 3 0 Seed dormancy control LUC7 PF03194.15 gi|530548639|ref|YP_008429181.1| - 1.1 8.8 12.9 0.97 9.0 8.5 2.0 1 1 1 2 2 2 0 LUC7 N_terminus Myb_DNA-binding PF00249.31 gi|530548639|ref|YP_008429181.1| - 1.2 9.4 6.1 5 7.4 0.2 3.2 3 0 0 3 3 3 0 Myb-like DNA-binding domain FlgN PF05130.12 gi|530548639|ref|YP_008429181.1| - 1.2 9.6 12.6 1.3e+02 3.0 12.6 2.2 1 1 0 1 1 1 0 FlgN protein FapA PF03961.13 gi|530548639|ref|YP_008429181.1| - 1.2 7.6 17.0 1.8 7.0 2.1 2.0 1 1 1 2 2 2 0 Flagellar Assembly Protein A K-box PF01486.17 gi|530548639|ref|YP_008429181.1| - 1.2 9.3 16.9 0.055 13.6 6.3 2.9 1 1 1 2 2 2 0 K-box region Matrilin_ccoil PF10393.9 gi|530548639|ref|YP_008429181.1| - 1.3 9.0 9.8 15 5.5 0.3 4.1 2 2 1 3 3 3 0 Trimeric coiled-coil oligomerisation domain of matrilin DUF4407 PF14362.6 gi|530548639|ref|YP_008429181.1| - 1.3 8.3 6.4 1.9 7.7 6.4 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) CorA PF01544.18 gi|530548639|ref|YP_008429181.1| - 1.3 8.3 12.5 7.6 5.8 12.4 2.5 1 1 0 1 1 1 0 CorA-like Mg2+ transporter protein FliJ PF02050.16 gi|530548639|ref|YP_008429181.1| - 1.3 9.2 13.4 0.63 10.3 6.5 2.5 1 1 1 2 2 2 0 Flagellar FliJ protein Seryl_tRNA_N PF02403.22 gi|530548639|ref|YP_008429181.1| - 1.3 9.3 18.0 1.6 9.0 12.0 3.1 1 1 1 2 2 2 0 Seryl-tRNA synthetase N-terminal domain YkyA PF10368.9 gi|530548639|ref|YP_008429181.1| - 1.3 8.6 20.6 3.7 7.2 20.3 1.8 1 1 1 2 2 2 0 Putative cell-wall binding lipoprotein TssO PF17561.2 gi|530548639|ref|YP_008429181.1| - 1.3 9.1 9.0 2 8.5 4.1 2.8 1 1 2 3 3 3 0 Type VI secretion system, TssO Carbpep_Y_N PF05388.11 gi|530548639|ref|YP_008429181.1| - 1.4 9.5 5.2 14 6.2 5.2 2.3 1 1 0 1 1 1 0 Carboxypeptidase Y pro-peptide Rootletin PF15035.6 gi|530548639|ref|YP_008429181.1| - 1.6 8.7 12.6 2.6 8.0 12.6 1.5 1 1 0 1 1 1 0 Ciliary rootlet component, centrosome cohesion DUF4559 PF15112.6 gi|530548639|ref|YP_008429181.1| - 1.8 8.2 11.9 7.7 6.1 12.0 1.7 1 1 1 2 2 2 0 Domain of unknown function (DUF4559) MtrG PF04210.13 gi|530548639|ref|YP_008429181.1| - 2 8.4 13.7 12 5.8 1.6 4.2 1 1 4 5 5 4 0 Tetrahydromethanopterin S-methyltransferase, subunit G Ran-binding PF05508.11 gi|530548639|ref|YP_008429181.1| - 2 7.3 8.6 3 6.7 8.4 1.4 1 1 0 1 1 1 0 RanGTP-binding protein COG2 PF06148.11 gi|530548639|ref|YP_008429181.1| - 2.1 8.5 13.1 1.4e+02 2.5 13.1 2.7 1 1 0 1 1 1 0 COG (conserved oligomeric Golgi) complex component, COG2 Rota_NSP3 PF01665.16 gi|530548639|ref|YP_008429181.1| - 2.1 7.4 11.7 1.3 8.0 8.4 1.9 1 1 1 2 2 2 0 Rotavirus non-structural protein NSP3 SLATT_5 PF18160.1 gi|530548639|ref|YP_008429181.1| - 2.5 7.4 4.6 0.85 8.9 1.3 1.8 1 1 1 2 2 2 0 SMODS and SLOG-associating 2TM effector domain family 5 GHMP_kinases_C PF08544.13 gi|530548639|ref|YP_008429181.1| - 2.5 8.5 4.3 37 4.8 4.0 2.7 1 1 0 1 1 1 0 GHMP kinases C terminal FlgM PF04316.13 gi|530548639|ref|YP_008429181.1| - 2.6 8.5 11.9 0.52 10.7 1.5 2.9 3 0 0 3 3 2 0 Anti-sigma-28 factor, FlgM Rx_N PF18052.1 gi|530548639|ref|YP_008429181.1| - 2.7 8.3 8.7 23 5.3 7.3 2.5 1 1 1 2 2 2 0 Rx N-terminal domain Baculo_p24 PF05073.12 gi|530548639|ref|YP_008429181.1| - 2.9 7.7 8.6 28 4.4 6.7 2.4 1 1 1 2 2 2 0 Baculovirus P24 capsid protein DUF2203 PF09969.9 gi|530548639|ref|YP_008429181.1| - 3.4 8.4 11.4 4e+02 1.7 11.4 2.6 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2203) AAA_23 PF13476.6 gi|530548639|ref|YP_008429181.1| - 3.6 8.0 21.8 6.6 7.2 21.8 1.4 1 1 0 1 1 1 0 AAA domain TcpS PF17456.2 gi|530548639|ref|YP_008429181.1| - 3.6 7.6 13.1 1.4 9.0 9.6 2.0 1 1 1 2 2 1 0 Toxin-coregulated pilus protein S Fib_alpha PF08702.10 gi|530548639|ref|YP_008429181.1| - 3.9 7.7 10.5 3.5 7.8 7.7 2.1 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family DUF1690 PF07956.11 gi|530548639|ref|YP_008429181.1| - 4 7.9 16.3 11 6.5 7.8 2.8 1 1 2 3 3 3 0 Protein of Unknown function (DUF1690) Hemagglutinin PF00509.18 gi|530548639|ref|YP_008429181.1| - 4 5.7 5.5 6.2 5.1 5.3 1.4 1 1 0 1 1 1 0 Haemagglutinin Rho_Binding PF08912.11 gi|530548639|ref|YP_008429181.1| - 4.2 8.3 20.0 3.1 8.7 0.6 3.8 1 1 2 3 3 3 0 Rho Binding Lipoprotein_2 PF00921.17 gi|530548639|ref|YP_008429181.1| - 4.4 6.8 9.9 11 5.4 8.1 2.0 1 1 1 2 2 2 0 Borrelia lipoprotein DUF2120 PF09893.9 gi|530548639|ref|YP_008429181.1| - 4.5 7.4 13.6 37 4.4 10.3 2.5 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2120) FemAB PF02388.16 gi|530548639|ref|YP_008429181.1| - 4.7 6.0 10.8 3.6 6.4 7.5 1.9 1 1 1 2 2 2 0 FemAB family bZIP_1 PF00170.21 gi|530548639|ref|YP_008429181.1| - 5.9 7.1 16.2 24 5.1 0.3 3.5 1 1 1 2 2 2 0 bZIP transcription factor ECH_2 PF16113.5 gi|530548639|ref|YP_008429181.1| - 6.5 6.1 7.8 19 4.6 5.2 1.9 1 1 1 2 2 2 0 Enoyl-CoA hydratase/isomerase MerR-DNA-bind PF09278.11 gi|530548639|ref|YP_008429181.1| - 7 7.3 11.7 31 5.2 0.4 3.9 1 1 3 4 4 4 0 MerR, DNA binding Swi5 PF07061.11 gi|530548639|ref|YP_008429181.1| - 7.6 6.7 15.3 14 5.9 6.7 3.5 1 1 2 3 3 3 0 Swi5 Med9 PF07544.13 gi|530548639|ref|YP_008429181.1| - 7.9 6.7 17.5 15 5.7 8.2 3.8 1 1 3 4 4 3 0 RNA polymerase II transcription mediator complex subunit 9 YabA PF06156.13 gi|530548639|ref|YP_008429181.1| - 8 7.2 13.1 40 4.9 6.4 3.1 1 1 2 3 3 2 0 Initiation control protein YabA Fzo_mitofusin PF04799.13 gi|530548639|ref|YP_008429181.1| - 8 6.0 9.5 1.6 8.3 2.8 2.4 1 1 1 2 2 2 0 fzo-like conserved region CSN5_C PF18323.1 gi|530548639|ref|YP_008429181.1| - 8.1 7.4 7.5 44 5.1 0.1 3.4 1 1 1 2 2 2 0 Cop9 signalosome subunit 5 C-terminal domain Arch_fla_DE PF04659.13 gi|530548640|ref|YP_008429182.1| - 3e-30 103.9 0.0 1.1e-29 102.1 0.0 1.8 2 0 0 2 2 2 1 Archaeal flagella protein DUF5622 PF18533.1 gi|530548640|ref|YP_008429182.1| - 0.16 12.2 0.5 0.38 10.9 0.5 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF5622) DUF5580 PF17743.1 gi|530548640|ref|YP_008429182.1| - 0.58 8.6 2.6 2.2 6.7 0.1 2.0 2 0 0 2 2 2 0 Family of unknown function (DUF5580) Arch_flagellin PF01917.16 gi|530548641|ref|YP_008429183.1| - 6.5e-08 32.9 0.1 7.8e-08 32.7 0.1 1.1 1 0 0 1 1 1 1 Archaebacterial flagellin CARDB PF07705.11 gi|530548641|ref|YP_008429183.1| - 0.046 14.0 0.3 0.076 13.3 0.3 1.3 1 0 0 1 1 1 0 CARDB MYCBPAP PF14646.6 gi|530548641|ref|YP_008429183.1| - 0.091 11.7 0.0 0.11 11.5 0.0 1.0 1 0 0 1 1 1 0 MYCBP-associated protein family Arch_flagellin PF01917.16 gi|530548642|ref|YP_008429184.1| - 1.1e-19 71.2 1.4 1.2e-19 71.1 1.4 1.0 1 0 0 1 1 1 1 Archaebacterial flagellin ATPase PF06745.13 gi|530548643|ref|YP_008429185.1| - 9.9e-20 70.9 0.0 1.4e-19 70.4 0.0 1.1 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|530548643|ref|YP_008429185.1| - 0.00045 19.9 0.0 0.014 15.0 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA PF00004.29 gi|530548643|ref|YP_008429185.1| - 0.00065 20.1 0.0 0.0018 18.7 0.0 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) NACHT PF05729.12 gi|530548643|ref|YP_008429185.1| - 0.0019 18.2 0.2 0.12 12.3 0.0 2.2 2 0 0 2 2 2 1 NACHT domain TsaE PF02367.17 gi|530548643|ref|YP_008429185.1| - 0.0098 15.9 0.0 0.017 15.1 0.0 1.3 1 0 0 1 1 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE IstB_IS21 PF01695.17 gi|530548643|ref|YP_008429185.1| - 0.012 15.4 0.2 0.37 10.5 0.0 2.2 1 1 0 2 2 2 0 IstB-like ATP binding protein AAA_16 PF13191.6 gi|530548643|ref|YP_008429185.1| - 0.015 15.7 0.1 0.036 14.4 0.1 1.7 1 1 0 1 1 1 0 AAA ATPase domain AAA_5 PF07728.14 gi|530548643|ref|YP_008429185.1| - 0.022 14.7 0.0 0.048 13.7 0.0 1.5 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) ELP6 PF09807.9 gi|530548643|ref|YP_008429185.1| - 0.03 13.7 0.0 0.039 13.4 0.0 1.2 1 0 0 1 1 1 0 Elongation complex protein 6 AAA_10 PF12846.7 gi|530548643|ref|YP_008429185.1| - 0.048 12.6 0.0 0.073 12.0 0.0 1.2 1 0 0 1 1 1 0 AAA-like domain GvpD PF07088.11 gi|530548643|ref|YP_008429185.1| - 0.055 12.1 0.1 0.1 11.2 0.1 1.3 1 0 0 1 1 1 0 GvpD gas vesicle protein AAA_14 PF13173.6 gi|530548643|ref|YP_008429185.1| - 0.066 13.2 0.2 0.26 11.3 0.2 2.0 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|530548643|ref|YP_008429185.1| - 0.098 12.9 0.1 0.23 11.7 0.1 1.8 1 1 0 1 1 1 0 AAA domain Sigma54_activat PF00158.26 gi|530548643|ref|YP_008429185.1| - 0.1 12.3 0.1 0.39 10.4 0.0 1.9 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA_18 PF13238.6 gi|530548643|ref|YP_008429185.1| - 0.12 12.9 0.1 0.41 11.2 0.1 1.8 1 1 0 1 1 1 0 AAA domain AAA_7 PF12775.7 gi|530548643|ref|YP_008429185.1| - 0.13 11.8 0.0 0.21 11.1 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region Sigma54_activ_2 PF14532.6 gi|530548643|ref|YP_008429185.1| - 0.13 12.3 0.1 11 6.2 0.0 2.2 2 0 0 2 2 2 0 Sigma-54 interaction domain T2SSE PF00437.20 gi|530548644|ref|YP_008429186.1| - 3.8e-48 163.9 0.0 6.5e-48 163.1 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_15 PF13175.6 gi|530548644|ref|YP_008429186.1| - 0.0047 16.7 0.0 0.22 11.2 0.0 2.2 2 0 0 2 2 2 1 AAA ATPase domain ABC_tran PF00005.27 gi|530548644|ref|YP_008429186.1| - 0.0073 16.8 0.0 0.03 14.8 0.0 1.9 2 0 0 2 2 2 1 ABC transporter AAA_29 PF13555.6 gi|530548644|ref|YP_008429186.1| - 0.024 14.4 0.0 0.051 13.3 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain FtsK_SpoIIIE PF01580.18 gi|530548644|ref|YP_008429186.1| - 0.1 11.9 0.0 0.2 11.0 0.0 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family DEAD PF00270.29 gi|530548644|ref|YP_008429186.1| - 0.12 12.2 0.0 0.28 10.9 0.0 1.6 1 0 0 1 1 1 0 DEAD/DEAH box helicase AAA_7 PF12775.7 gi|530548644|ref|YP_008429186.1| - 0.12 11.9 0.0 1.3 8.5 0.0 2.1 2 0 0 2 2 2 0 P-loop containing dynein motor region Ten1_2 PF15490.6 gi|530548644|ref|YP_008429186.1| - 0.13 12.0 0.6 5.3 6.8 0.1 2.7 2 1 0 2 2 2 0 Telomere-capping, CST complex subunit Microtub_bd PF16796.5 gi|530548644|ref|YP_008429186.1| - 0.15 12.0 0.0 0.31 11.0 0.0 1.5 1 0 0 1 1 1 0 Microtubule binding AAA_23 PF13476.6 gi|530548644|ref|YP_008429186.1| - 0.24 11.9 3.9 0.12 12.8 0.6 2.0 2 0 0 2 2 2 0 AAA domain T2SSF PF00482.23 gi|530548645|ref|YP_008429187.1| - 2.4e-17 63.1 1.1 3.2e-09 36.8 0.1 4.0 5 0 0 5 5 5 2 Type II secretion system (T2SS), protein F DUF21 PF01595.20 gi|530548645|ref|YP_008429187.1| - 0.0091 15.7 3.0 0.0091 15.7 3.0 2.8 2 0 0 2 2 2 1 Cyclin M transmembrane N-terminal domain DUF521 PF04412.13 gi|530548647|ref|YP_008429189.1| - 8.1e-148 492.4 0.0 1e-147 492.1 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF521) Aconitase PF00330.20 gi|530548647|ref|YP_008429189.1| - 0.019 14.0 0.0 0.03 13.3 0.0 1.2 1 0 0 1 1 1 0 Aconitase family (aconitate hydratase) Borrelia_orfA PF02414.15 gi|530548647|ref|YP_008429189.1| - 0.11 12.1 0.1 0.17 11.5 0.1 1.2 1 0 0 1 1 1 0 Borrelia ORF-A DUF126 PF01989.16 gi|530548648|ref|YP_008429190.1| - 1.5e-36 124.0 0.4 1.5e-36 124.0 0.4 1.6 2 0 0 2 2 2 1 Aconitase X swivel domain DDR_swiveling PF18427.1 gi|530548648|ref|YP_008429190.1| - 0.0049 16.9 2.1 0.0059 16.6 2.1 1.1 1 0 0 1 1 1 1 DD-reactivating factor swiveling domain GATase_2 PF00310.21 gi|530548648|ref|YP_008429190.1| - 0.094 11.4 0.1 0.11 11.2 0.1 1.1 1 0 0 1 1 1 0 Glutamine amidotransferases class-II KOW PF00467.29 gi|530548648|ref|YP_008429190.1| - 0.19 11.7 2.4 0.6 10.1 0.3 2.6 2 0 0 2 2 2 0 KOW motif Peptidase_M50 PF02163.22 gi|530548649|ref|YP_008429191.1| - 4.1e-11 42.6 8.8 1.3e-06 27.9 0.3 2.5 1 1 1 2 2 2 2 Peptidase family M50 Zn-ribbon_8 PF09723.10 gi|530548649|ref|YP_008429191.1| - 0.0013 18.8 0.5 0.0025 17.9 0.5 1.4 1 0 0 1 1 1 1 Zinc ribbon domain TF_Zn_Ribbon PF08271.12 gi|530548649|ref|YP_008429191.1| - 0.0073 15.8 2.1 0.012 15.1 2.1 1.3 1 0 0 1 1 1 1 TFIIB zinc-binding zf-C4_Topoisom PF01396.19 gi|530548649|ref|YP_008429191.1| - 0.13 12.0 0.2 0.13 12.0 0.2 1.7 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger TackOD1 PF18551.1 gi|530548649|ref|YP_008429191.1| - 0.23 11.1 0.1 0.36 10.5 0.1 1.3 1 0 0 1 1 1 0 Thaumarchaeal output domain 1 TFIIS_C PF01096.18 gi|530548649|ref|YP_008429191.1| - 0.25 11.2 1.4 4.9 7.1 0.2 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-ribbon_3 PF13248.6 gi|530548649|ref|YP_008429191.1| - 0.29 10.6 3.7 5.2 6.6 3.7 2.2 1 1 0 1 1 1 0 zinc-ribbon domain zf-IS66 PF13005.7 gi|530548649|ref|YP_008429191.1| - 0.51 10.8 2.4 0.78 10.2 0.1 2.3 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 PIN PF01850.21 gi|530548650|ref|YP_008429192.1| - 3.7e-07 30.7 0.0 9.1e-07 29.4 0.0 1.6 1 1 0 1 1 1 1 PIN domain MazE_antitoxin PF04014.18 gi|530548651|ref|YP_008429193.1| - 1.5e-11 43.9 0.1 2.2e-11 43.4 0.1 1.4 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin PrlF_antitoxin PF15937.5 gi|530548651|ref|YP_008429193.1| - 1.2e-06 28.8 0.2 1.7e-06 28.3 0.2 1.4 1 1 0 1 1 1 1 prlF antitoxin for toxin YhaV_toxin ID PF18543.1 gi|530548651|ref|YP_008429193.1| - 0.0086 16.1 0.0 0.014 15.4 0.0 1.4 1 0 0 1 1 1 1 Intracellular delivery domain ApoLp-III PF07464.11 gi|530548651|ref|YP_008429193.1| - 0.035 14.2 0.0 0.046 13.8 0.0 1.1 1 0 0 1 1 1 0 Apolipophorin-III precursor (apoLp-III) DUF1905 PF08922.11 gi|530548651|ref|YP_008429193.1| - 0.041 13.9 0.0 0.074 13.1 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1905) Peptidase_S24 PF00717.23 gi|530548651|ref|YP_008429193.1| - 0.076 13.0 0.4 0.088 12.8 0.4 1.3 1 1 0 1 1 1 0 Peptidase S24-like RHH_5 PF07878.11 gi|530548651|ref|YP_008429193.1| - 0.1 12.5 0.1 0.27 11.2 0.0 1.7 2 0 0 2 2 2 0 CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5 Tsc35 PF15079.6 gi|530548651|ref|YP_008429193.1| - 0.16 11.5 1.8 0.18 11.4 1.8 1.1 1 0 0 1 1 1 0 Testis-specific protein 35 HTH_11 PF08279.12 gi|530548652|ref|YP_008429194.1| - 6.3e-05 22.8 0.3 0.00015 21.6 0.1 1.8 2 0 0 2 2 2 1 HTH domain GSCFA PF08885.11 gi|530548652|ref|YP_008429194.1| - 0.0013 18.5 0.0 0.0014 18.4 0.0 1.3 1 0 0 1 1 1 1 GSCFA family HTH_23 PF13384.6 gi|530548652|ref|YP_008429194.1| - 0.0014 18.4 0.0 0.0034 17.1 0.0 1.7 1 0 0 1 1 1 1 Homeodomain-like domain UPF0122 PF04297.14 gi|530548652|ref|YP_008429194.1| - 0.0058 16.8 0.7 0.023 14.9 0.0 2.2 2 0 0 2 2 2 1 Putative helix-turn-helix protein, YlxM / p13 like Cas9_PI PF16595.5 gi|530548652|ref|YP_008429194.1| - 0.011 15.6 0.2 0.019 14.8 0.2 1.5 1 1 0 1 1 1 0 PAM-interacting domain of CRISPR-associated endonuclease Cas9 HTH_38 PF13936.6 gi|530548652|ref|YP_008429194.1| - 0.014 15.1 0.5 0.3 10.9 0.5 2.3 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_28 PF13518.6 gi|530548652|ref|YP_008429194.1| - 0.015 15.4 0.0 0.035 14.2 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_7 PF02796.15 gi|530548652|ref|YP_008429194.1| - 0.016 15.3 0.0 0.044 13.9 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_29 PF13551.6 gi|530548652|ref|YP_008429194.1| - 0.016 15.2 0.0 0.032 14.2 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn helix HTH_22 PF13309.6 gi|530548652|ref|YP_008429194.1| - 0.022 14.8 0.1 0.16 12.1 0.0 2.3 2 0 0 2 2 2 0 HTH domain HTH_17 PF12728.7 gi|530548652|ref|YP_008429194.1| - 0.081 13.1 0.0 0.18 12.0 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Class_IIIsignal PF04021.12 gi|530548653|ref|YP_008429195.1| - 1.3e-08 34.5 2.7 2.5e-08 33.6 2.7 1.5 1 0 0 1 1 1 1 Class III signal peptide DUF3285 PF11688.8 gi|530548653|ref|YP_008429195.1| - 0.0031 17.4 0.0 0.0048 16.8 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF3285) Class_IIIsignal PF04021.12 gi|530548654|ref|YP_008429196.1| - 1.9e-08 34.0 3.3 2.8e-08 33.4 3.3 1.3 1 0 0 1 1 1 1 Class III signal peptide DUF2275 PF10039.9 gi|530548654|ref|YP_008429196.1| - 0.14 12.3 0.0 0.14 12.2 0.0 1.2 1 0 0 1 1 1 0 Predicted integral membrane protein (DUF2275) Resolvase PF00239.21 gi|530547459|ref|YP_008429198.1| - 2.1e-24 86.3 0.0 2.8e-24 85.9 0.0 1.1 1 0 0 1 1 1 1 Resolvase, N terminal domain HTH_17 PF12728.7 gi|530547459|ref|YP_008429198.1| - 2.1e-12 47.1 0.2 4.3e-12 46.0 0.2 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain MerR PF00376.23 gi|530547459|ref|YP_008429198.1| - 8.5e-10 38.2 0.2 8.5e-10 38.2 0.2 1.9 2 0 0 2 2 2 1 MerR family regulatory protein MerR_1 PF13411.6 gi|530547459|ref|YP_008429198.1| - 2.3e-09 37.2 0.1 5.2e-09 36.1 0.1 1.6 1 0 0 1 1 1 1 MerR HTH family regulatory protein HTH_23 PF13384.6 gi|530547459|ref|YP_008429198.1| - 0.0013 18.5 0.2 0.012 15.4 0.0 2.4 3 0 0 3 3 3 1 Homeodomain-like domain RE_AlwI PF09491.10 gi|530547459|ref|YP_008429198.1| - 0.0021 17.0 0.9 0.0026 16.6 0.9 1.2 1 0 0 1 1 1 1 AlwI restriction endonuclease HTH_28 PF13518.6 gi|530547459|ref|YP_008429198.1| - 0.023 14.8 0.0 0.062 13.4 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain Glyco_trans_4_2 PF13477.6 gi|530547459|ref|YP_008429198.1| - 0.04 13.9 0.1 3.5 7.7 0.0 2.3 2 0 0 2 2 2 0 Glycosyl transferase 4-like POTRA_1 PF08478.10 gi|530547459|ref|YP_008429198.1| - 0.056 13.8 0.1 0.18 12.1 0.1 1.9 1 0 0 1 1 1 0 POTRA domain, FtsQ-type HTH_29 PF13551.6 gi|530547459|ref|YP_008429198.1| - 0.067 13.2 0.0 0.18 11.8 0.0 1.8 1 1 0 1 1 1 0 Winged helix-turn helix Terminase_5 PF06056.12 gi|530547459|ref|YP_008429198.1| - 0.14 12.0 1.0 0.47 10.4 0.0 2.2 2 1 1 3 3 3 0 Putative ATPase subunit of terminase (gpP-like) OrfB_Zn_ribbon PF07282.11 gi|530548656|ref|YP_008429199.1| - 7e-17 61.1 0.1 1.3e-16 60.2 0.1 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|530548656|ref|YP_008429199.1| - 1.1e-05 25.6 0.0 1.1e-05 25.6 0.0 2.8 3 1 1 4 4 4 1 Probable transposase Prok-RING_1 PF14446.6 gi|530548656|ref|YP_008429199.1| - 0.00012 21.9 0.4 0.00019 21.3 0.4 1.3 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 DZR PF12773.7 gi|530548656|ref|YP_008429199.1| - 0.008 16.2 0.6 0.013 15.5 0.6 1.2 1 0 0 1 1 1 1 Double zinc ribbon DNA_ligase_ZBD PF03119.16 gi|530548656|ref|YP_008429199.1| - 0.015 15.3 1.5 0.027 14.5 1.5 1.4 1 0 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain TF_Zn_Ribbon PF08271.12 gi|530548656|ref|YP_008429199.1| - 0.067 12.7 3.2 0.15 11.6 3.2 1.5 1 0 0 1 1 1 0 TFIIB zinc-binding zinc_ribbon_2 PF13240.6 gi|530548656|ref|YP_008429199.1| - 0.067 12.9 2.3 0.14 12.0 2.3 1.5 1 0 0 1 1 1 0 zinc-ribbon domain PHD PF00628.29 gi|530548656|ref|YP_008429199.1| - 0.18 11.7 1.0 0.29 11.1 1.0 1.3 1 0 0 1 1 1 0 PHD-finger zf-ribbon_3 PF13248.6 gi|530548656|ref|YP_008429199.1| - 0.24 10.8 2.9 0.54 9.7 2.9 1.5 1 1 0 1 1 1 0 zinc-ribbon domain zf-RRN7 PF11781.8 gi|530548656|ref|YP_008429199.1| - 0.28 10.9 1.2 0.54 10.0 1.2 1.4 1 0 0 1 1 1 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Rad50_zn_hook PF04423.14 gi|530548656|ref|YP_008429199.1| - 4.4 7.2 7.2 1.4 8.8 0.1 3.4 4 0 0 4 4 4 0 Rad50 zinc hook motif PIN_2 PF10130.9 gi|530548657|ref|YP_008429200.1| - 9.6e-29 100.3 0.1 1.1e-28 100.1 0.1 1.0 1 0 0 1 1 1 1 PIN domain PIN PF01850.21 gi|530548657|ref|YP_008429200.1| - 1.1e-07 32.3 0.1 1.5e-07 32.0 0.1 1.1 1 0 0 1 1 1 1 PIN domain PIN_12 PF16289.5 gi|530548657|ref|YP_008429200.1| - 1.9e-05 25.2 0.9 2.7e-05 24.8 0.9 1.4 1 1 0 1 1 1 1 PIN domain PIN_8 PF18476.1 gi|530548657|ref|YP_008429200.1| - 0.00099 19.0 0.0 0.0013 18.7 0.0 1.2 1 0 0 1 1 1 1 PIN like domain PIN_3 PF13470.6 gi|530548657|ref|YP_008429200.1| - 0.022 15.5 0.1 0.049 14.4 0.0 1.7 2 1 0 2 2 2 0 PIN domain Bac_small_YrzI PF09501.10 gi|530548658|ref|YP_008429201.1| - 0.0075 16.4 1.1 0.0075 16.4 1.1 2.1 1 1 1 2 2 2 1 Probable sporulation protein (Bac_small_yrzI) GAD-like PF08887.11 gi|530548658|ref|YP_008429201.1| - 0.1 12.4 0.0 0.13 12.0 0.0 1.1 1 0 0 1 1 1 0 GAD-like domain Cactin_mid PF10312.9 gi|530548660|ref|YP_008429203.1| - 0.084 12.6 0.0 0.091 12.5 0.0 1.1 1 0 0 1 1 1 0 Conserved mid region of cactin Polbeta PF18765.1 gi|530548661|ref|YP_008429204.1| - 3.7e-07 30.1 0.1 5.8e-07 29.5 0.1 1.3 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 gi|530548661|ref|YP_008429204.1| - 0.0022 18.2 0.1 0.0036 17.6 0.1 1.3 1 0 0 1 1 1 1 Nucleotidyltransferase domain DUF2283 PF10049.9 gi|530548662|ref|YP_008429205.1| - 2.2e-18 66.2 3.6 3.1e-18 65.7 3.6 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2283) KTSC PF13619.6 gi|530548662|ref|YP_008429205.1| - 0.015 15.1 0.0 0.13 12.1 0.1 2.0 1 1 1 2 2 2 0 KTSC domain RHH_1 PF01402.21 gi|530548663|ref|YP_008429206.1| - 0.0036 17.2 1.1 0.0036 17.2 1.1 1.6 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family Cwf_Cwc_15 PF04889.12 gi|530548663|ref|YP_008429206.1| - 0.05 13.3 2.2 0.059 13.1 2.2 1.0 1 0 0 1 1 1 0 Cwf15/Cwc15 cell cycle control protein HK97-gp10_like PF04883.12 gi|530548663|ref|YP_008429206.1| - 0.068 14.2 0.2 0.078 14.0 0.2 1.2 1 0 0 1 1 1 0 Bacteriophage HK97-gp10, putative tail-component PIN PF01850.21 gi|530548664|ref|YP_008429207.1| - 1.7e-18 67.3 0.2 1.9e-18 67.1 0.2 1.0 1 0 0 1 1 1 1 PIN domain PIN_12 PF16289.5 gi|530548664|ref|YP_008429207.1| - 0.00011 22.7 0.6 0.00014 22.4 0.6 1.2 1 0 0 1 1 1 1 PIN domain Sel1 PF08238.12 gi|530548664|ref|YP_008429207.1| - 0.11 13.2 0.0 5.8 7.7 0.0 2.4 2 0 0 2 2 2 0 Sel1 repeat MazE_antitoxin PF04014.18 gi|530548665|ref|YP_008429208.1| - 3.1e-07 30.1 0.3 6.6e-07 29.1 0.3 1.5 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin MraZ PF02381.18 gi|530548665|ref|YP_008429208.1| - 0.0037 17.2 0.0 0.0067 16.4 0.0 1.4 1 0 0 1 1 1 1 MraZ protein, putative antitoxin-like AbrB-like PF14250.6 gi|530548665|ref|YP_008429208.1| - 0.049 13.7 0.2 0.17 12.0 0.0 1.8 2 0 0 2 2 2 0 AbrB-like transcriptional regulator PrlF_antitoxin PF15937.5 gi|530548665|ref|YP_008429208.1| - 0.052 14.0 0.5 0.24 11.8 0.5 1.9 1 1 0 1 1 1 0 prlF antitoxin for toxin YhaV_toxin Thump_like PF18096.1 gi|530548665|ref|YP_008429208.1| - 0.15 12.0 0.3 0.15 12.0 0.3 2.1 2 1 1 3 3 3 0 THUMP domain-like PIN PF01850.21 gi|530548666|ref|YP_008429209.1| - 6.8e-09 36.3 0.2 8.9e-09 35.9 0.2 1.2 1 0 0 1 1 1 1 PIN domain PIN_2 PF10130.9 gi|530548666|ref|YP_008429209.1| - 0.059 13.6 0.0 0.072 13.3 0.0 1.3 1 0 0 1 1 1 0 PIN domain DUF5615 PF18480.1 gi|530548666|ref|YP_008429209.1| - 0.093 12.5 0.0 0.12 12.1 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF5615) Luteo_coat PF00894.18 gi|530548666|ref|YP_008429209.1| - 0.15 12.0 0.0 0.21 11.5 0.0 1.2 1 0 0 1 1 1 0 Luteovirus coat protein MazG PF03819.17 gi|530548667|ref|YP_008429210.1| - 3.1e-15 56.1 0.1 6.3e-15 55.1 0.0 1.5 2 0 0 2 2 2 1 MazG nucleotide pyrophosphohydrolase domain MazG-like PF12643.7 gi|530548667|ref|YP_008429210.1| - 4.8e-06 26.7 0.1 6.7e-06 26.3 0.1 1.2 1 0 0 1 1 1 1 MazG-like family PRA-PH PF01503.17 gi|530548667|ref|YP_008429210.1| - 0.0011 19.3 0.7 0.0014 19.0 0.7 1.3 1 1 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase Resolvase PF00239.21 gi|530547460|ref|YP_008429211.1| - 1.1e-24 87.2 0.3 1.6e-24 86.7 0.3 1.2 1 0 0 1 1 1 1 Resolvase, N terminal domain HTH_17 PF12728.7 gi|530547460|ref|YP_008429211.1| - 4.9e-12 45.8 0.6 1.3e-11 44.5 0.2 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain MerR PF00376.23 gi|530547460|ref|YP_008429211.1| - 5.8e-11 42.0 0.4 2.5e-10 40.0 0.1 2.2 2 0 0 2 2 2 1 MerR family regulatory protein MerR_1 PF13411.6 gi|530547460|ref|YP_008429211.1| - 1.4e-10 41.1 0.7 5e-10 39.3 0.3 2.1 2 0 0 2 2 2 1 MerR HTH family regulatory protein Helicase_C PF00271.31 gi|530547460|ref|YP_008429211.1| - 0.0052 17.1 0.9 0.032 14.6 0.2 2.1 2 0 0 2 2 2 1 Helicase conserved C-terminal domain Phage_Nu1 PF07471.12 gi|530547460|ref|YP_008429211.1| - 0.014 15.2 0.2 0.035 13.9 0.2 1.6 1 1 0 1 1 1 0 Phage DNA packaging protein Nu1 HTH_23 PF13384.6 gi|530547460|ref|YP_008429211.1| - 0.031 14.1 0.4 0.16 11.8 0.0 2.3 3 0 0 3 3 3 0 Homeodomain-like domain HTH_3 PF01381.22 gi|530547460|ref|YP_008429211.1| - 0.056 13.5 0.2 1.1 9.3 0.0 3.1 3 1 0 3 3 3 0 Helix-turn-helix HTH_28 PF13518.6 gi|530547460|ref|YP_008429211.1| - 0.058 13.5 0.0 0.16 12.1 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain GP3_package PF16677.5 gi|530547460|ref|YP_008429211.1| - 0.081 13.1 0.6 4 7.6 0.0 2.9 2 1 0 3 3 3 0 DNA-packaging protein gp3 Sec7 PF01369.20 gi|530548668|ref|YP_008429212.1| - 0.014 15.1 0.1 0.016 14.9 0.1 1.1 1 0 0 1 1 1 0 Sec7 domain EcoEI_R_C PF08463.10 gi|530548668|ref|YP_008429212.1| - 0.015 15.4 0.2 0.018 15.2 0.2 1.1 1 0 0 1 1 1 0 EcoEI R protein C-terminal Lipoprotein_3 PF00938.17 gi|530548668|ref|YP_008429212.1| - 0.057 13.6 0.8 0.15 12.2 0.2 1.8 1 1 1 2 2 2 0 Lipoprotein OrfB_Zn_ribbon PF07282.11 gi|530548669|ref|YP_008429213.1| - 0.0004 20.3 0.1 0.00075 19.4 0.1 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HEAT_2 PF13646.6 gi|530548670|ref|YP_008429214.1| - 3.4e-08 33.8 0.0 0.0016 18.8 0.0 2.7 1 1 0 2 2 2 2 HEAT repeats RTP1_C1 PF10363.9 gi|530548670|ref|YP_008429214.1| - 4.7e-05 23.5 0.0 0.0001 22.5 0.0 1.6 1 1 0 1 1 1 1 Required for nuclear transport of RNA pol II C-terminus 1 HEAT PF02985.22 gi|530548670|ref|YP_008429214.1| - 6.4e-05 22.9 0.0 0.022 15.0 0.0 2.8 2 0 0 2 2 2 1 HEAT repeat Cnd1 PF12717.7 gi|530548670|ref|YP_008429214.1| - 0.0002 21.4 0.0 0.00035 20.6 0.0 1.5 1 1 0 1 1 1 1 non-SMC mitotic condensation complex subunit 1 Adaptin_N PF01602.20 gi|530548670|ref|YP_008429214.1| - 0.00021 20.0 0.0 0.0032 16.1 0.0 2.1 1 1 1 2 2 2 2 Adaptin N terminal region CLASP_N PF12348.8 gi|530548670|ref|YP_008429214.1| - 0.0011 18.6 0.0 0.0015 18.1 0.0 1.1 1 0 0 1 1 1 1 CLASP N terminal V-ATPase_H_C PF11698.8 gi|530548670|ref|YP_008429214.1| - 0.0024 18.0 0.0 3.2 7.9 0.0 2.8 2 1 1 3 3 3 2 V-ATPase subunit H V-ATPase_H_N PF03224.14 gi|530548670|ref|YP_008429214.1| - 0.0084 15.4 0.0 0.011 15.0 0.0 1.1 1 0 0 1 1 1 1 V-ATPase subunit H HEAT_EZ PF13513.6 gi|530548670|ref|YP_008429214.1| - 0.0089 16.5 0.0 0.046 14.2 0.0 2.2 2 1 1 3 3 3 1 HEAT-like repeat B56 PF01603.20 gi|530548670|ref|YP_008429214.1| - 0.094 11.7 0.0 0.14 11.1 0.0 1.2 1 0 0 1 1 1 0 Protein phosphatase 2A regulatory B subunit (B56 family) BofA PF07441.11 gi|530548671|ref|YP_008429215.1| - 0.00023 21.3 23.0 0.00035 20.7 23.0 1.3 1 0 0 1 1 1 1 SigmaK-factor processing regulatory protein BofA eRF1_2 PF03464.15 gi|530548672|ref|YP_008429216.1| - 2.6e-49 166.9 0.1 4.7e-49 166.1 0.1 1.4 1 0 0 1 1 1 1 eRF1 domain 2 eRF1_3 PF03465.15 gi|530548672|ref|YP_008429216.1| - 1.3e-35 122.3 1.3 2.6e-35 121.3 0.3 2.1 2 0 0 2 2 1 1 eRF1 domain 3 baeRF_family10 PF18854.1 gi|530548672|ref|YP_008429216.1| - 2.1e-15 57.2 0.0 4.5e-15 56.1 0.0 1.6 1 1 0 1 1 1 1 Bacterial archaeo-eukaryotic release factor family 10 acVLRF1 PF18859.1 gi|530548672|ref|YP_008429216.1| - 6.5e-15 55.6 0.0 2.4e-14 53.8 0.0 1.9 1 1 1 2 2 2 1 Actinobacteria/chloroflexi VLRF1 release factor eRF1_1 PF03463.15 gi|530548672|ref|YP_008429216.1| - 1.2e-10 41.4 0.0 2.1e-10 40.7 0.0 1.4 1 0 0 1 1 1 1 eRF1 domain 1 HypA PF01155.19 gi|530548672|ref|YP_008429216.1| - 0.0013 18.8 0.1 0.0027 17.7 0.1 1.7 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Lar_restr_allev PF14354.6 gi|530548672|ref|YP_008429216.1| - 0.0034 17.7 0.2 0.085 13.3 0.0 2.4 2 0 0 2 2 2 1 Restriction alleviation protein Lar baeRF_family12 PF18856.1 gi|530548672|ref|YP_008429216.1| - 0.007 17.0 0.0 0.016 15.8 0.0 1.6 1 0 0 1 1 1 1 Bacterial archaeo-eukaryotic release factor family 12 zf-ribbon_3 PF13248.6 gi|530548672|ref|YP_008429216.1| - 0.015 14.7 2.3 0.48 9.9 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|530548672|ref|YP_008429216.1| - 0.023 14.8 1.8 0.04 14.1 0.6 2.0 2 0 0 2 2 2 0 Zinc ribbon domain MCM6_C PF18263.1 gi|530548672|ref|YP_008429216.1| - 0.024 14.9 2.4 0.59 10.4 0.1 2.4 2 0 0 2 2 2 0 MCM6 C-terminal winged-helix domain DZR PF12773.7 gi|530548672|ref|YP_008429216.1| - 0.07 13.2 0.4 0.12 12.4 0.4 1.3 1 0 0 1 1 1 0 Double zinc ribbon zf-IS66 PF13005.7 gi|530548672|ref|YP_008429216.1| - 0.51 10.8 2.4 26 5.3 0.0 3.5 4 0 0 4 4 4 0 zinc-finger binding domain of transposase IS66 zf-ACC PF17848.1 gi|530548672|ref|YP_008429216.1| - 0.9 9.7 5.3 2 8.6 0.5 2.5 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain zinc_ribbon_2 PF13240.6 gi|530548672|ref|YP_008429216.1| - 2.4 8.0 6.5 2.8 7.8 0.3 2.4 2 0 0 2 2 2 0 zinc-ribbon domain GFD1 PF17331.2 gi|530548672|ref|YP_008429216.1| - 3.5 7.9 8.4 2.3 8.5 1.6 3.4 2 0 0 2 2 2 0 GFD1 mRNA transport factor DHDPS PF00701.22 gi|530548673|ref|YP_008429217.1| - 2.7e-63 213.4 0.0 3e-63 213.2 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family DHquinase_I PF01487.15 gi|530548673|ref|YP_008429217.1| - 0.17 12.1 0.0 0.26 11.5 0.0 1.3 1 0 0 1 1 1 0 Type I 3-dehydroquinase tRNA-synt_1d PF00750.19 gi|530548674|ref|YP_008429218.1| - 1.8e-40 139.0 3.3 3.5e-26 92.0 2.2 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (R) DALR_1 PF05746.15 gi|530548674|ref|YP_008429218.1| - 5.6e-35 120.1 1.9 1e-34 119.3 0.4 2.3 2 0 0 2 2 2 1 DALR anticodon binding domain Arg_tRNA_synt_N PF03485.16 gi|530548674|ref|YP_008429218.1| - 1.2e-21 77.0 0.2 8e-21 74.4 0.0 2.6 2 0 0 2 2 2 1 Arginyl tRNA synthetase N terminal domain tRNA-synt_1e PF01406.19 gi|530548674|ref|YP_008429218.1| - 8.8e-05 22.0 0.0 0.0002 20.8 0.0 1.7 1 0 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1 PF00133.22 gi|530548674|ref|YP_008429218.1| - 0.0027 16.1 0.1 0.0027 16.1 0.1 1.6 2 0 0 2 2 2 1 tRNA synthetases class I (I, L, M and V) ApoLp-III PF07464.11 gi|530548674|ref|YP_008429218.1| - 0.03 14.4 0.7 0.03 14.4 0.7 2.3 3 1 0 3 3 3 0 Apolipophorin-III precursor (apoLp-III) tRNA-synt_1g PF09334.11 gi|530548674|ref|YP_008429218.1| - 0.043 12.6 0.2 0.31 9.8 0.0 2.2 2 0 0 2 2 2 0 tRNA synthetases class I (M) Lip_prot_lig_C PF10437.9 gi|530548675|ref|YP_008429219.1| - 2e-07 30.9 2.0 2.8e-07 30.4 2.0 1.3 1 1 0 1 1 1 1 Bacterial lipoate protein ligase C-terminus SpoIIM PF01944.17 gi|530548676|ref|YP_008429220.1| - 3e-32 111.8 19.7 3.6e-32 111.6 19.7 1.0 1 0 0 1 1 1 1 Stage II sporulation protein M DUF354 PF04007.12 gi|530548678|ref|YP_008429222.1| - 9.3e-90 301.1 0.0 1.1e-89 300.8 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF354) Glyco_transf_4 PF13439.6 gi|530548678|ref|YP_008429222.1| - 0.00071 19.6 0.0 0.0017 18.4 0.0 1.7 1 0 0 1 1 1 1 Glycosyltransferase Family 4 LpxB PF02684.15 gi|530548678|ref|YP_008429222.1| - 0.014 14.2 0.0 0.16 10.7 0.0 2.1 2 0 0 2 2 2 0 Lipid-A-disaccharide synthetase Glyco_trans_4_2 PF13477.6 gi|530548678|ref|YP_008429222.1| - 0.033 14.2 0.0 0.086 12.9 0.0 1.6 2 0 0 2 2 2 0 Glycosyl transferase 4-like Epimerase_2 PF02350.19 gi|530548678|ref|YP_008429222.1| - 0.05 12.5 0.0 0.081 11.8 0.0 1.3 1 0 0 1 1 1 0 UDP-N-acetylglucosamine 2-epimerase Hydrolase_3 PF08282.12 gi|530548678|ref|YP_008429222.1| - 0.22 11.2 0.0 0.37 10.5 0.0 1.3 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase UDPG_MGDP_dh_N PF03721.14 gi|530548679|ref|YP_008429223.1| - 1.9e-53 180.8 0.2 3.7e-53 179.9 0.2 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh_C PF03720.15 gi|530548679|ref|YP_008429223.1| - 2e-27 95.6 0.0 3.1e-26 91.8 0.0 2.5 2 1 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain UDPG_MGDP_dh PF00984.19 gi|530548679|ref|YP_008429223.1| - 1.6e-25 89.1 0.0 3.3e-25 88.1 0.0 1.6 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain NAD_binding_2 PF03446.15 gi|530548679|ref|YP_008429223.1| - 3.3e-07 30.6 0.1 1.2e-06 28.8 0.1 1.9 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 3HCDH_N PF02737.18 gi|530548679|ref|YP_008429223.1| - 6.8e-06 26.1 0.0 1.6e-05 24.9 0.0 1.6 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.21 gi|530548679|ref|YP_008429223.1| - 0.0001 21.7 0.1 0.00022 20.6 0.1 1.5 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain NAD_Gly3P_dh_N PF01210.23 gi|530548679|ref|YP_008429223.1| - 0.00058 19.9 0.0 0.018 15.0 0.0 2.4 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 2-Hacid_dh_C PF02826.19 gi|530548679|ref|YP_008429223.1| - 0.00084 18.7 0.1 0.0066 15.8 0.1 2.2 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|530548679|ref|YP_008429223.1| - 0.0018 18.8 0.6 6.8 7.3 0.0 3.3 2 1 0 2 2 2 2 NADP oxidoreductase coenzyme F420-dependent Pyr_redox_2 PF07992.14 gi|530548679|ref|YP_008429223.1| - 0.011 15.0 0.1 0.018 14.3 0.1 1.3 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase ApbA PF02558.16 gi|530548679|ref|YP_008429223.1| - 0.025 14.2 0.0 0.044 13.4 0.0 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Pyr_redox PF00070.27 gi|530548679|ref|YP_008429223.1| - 0.063 13.8 0.1 0.2 12.2 0.1 1.9 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_11 PF14833.6 gi|530548679|ref|YP_008429223.1| - 0.16 12.2 0.1 0.45 10.8 0.1 1.7 2 0 0 2 2 2 0 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase Epimerase_2 PF02350.19 gi|530548680|ref|YP_008429224.1| - 5.3e-122 407.0 0.1 6.2e-122 406.8 0.1 1.0 1 0 0 1 1 1 1 UDP-N-acetylglucosamine 2-epimerase Glyco_trans_4_2 PF13477.6 gi|530548680|ref|YP_008429224.1| - 0.0025 17.9 0.0 0.006 16.6 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferase 4-like Glyco_transf_4 PF13439.6 gi|530548680|ref|YP_008429224.1| - 0.0028 17.7 0.0 0.0058 16.7 0.0 1.5 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_transf_28 PF03033.20 gi|530548680|ref|YP_008429224.1| - 0.0097 16.0 0.1 0.052 13.6 0.1 2.0 2 0 0 2 2 2 1 Glycosyltransferase family 28 N-terminal domain AIRC PF00731.20 gi|530548680|ref|YP_008429224.1| - 0.0097 15.5 0.1 0.19 11.3 0.0 2.2 2 0 0 2 2 2 1 AIR carboxylase Pyr_redox PF00070.27 gi|530548680|ref|YP_008429224.1| - 0.026 15.1 0.3 9.2 6.9 0.1 3.1 2 1 1 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase AMPK1_CBM PF16561.5 gi|530548681|ref|YP_008429225.1| - 0.00042 20.5 1.4 0.0011 19.1 0.8 1.8 2 0 0 2 2 2 1 Glycogen recognition site of AMP-activated protein kinase CBM_48 PF02922.18 gi|530548681|ref|YP_008429225.1| - 0.12 12.8 0.2 0.26 11.7 0.1 1.5 1 1 1 2 2 2 0 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) MepB PF08877.10 gi|530548682|ref|YP_008429226.1| - 0.083 12.6 0.3 1 9.0 0.1 2.4 1 1 1 2 2 2 0 MepB protein Radical_SAM PF04055.21 gi|564287482|ref|YP_008429227.3| - 7.7e-26 91.4 0.0 1e-24 87.8 0.0 2.1 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|564287482|ref|YP_008429227.3| - 0.0096 16.0 0.2 0.05 13.7 0.1 2.1 2 1 0 2 2 2 1 4Fe-4S single cluster domain DUF5010 PF16402.5 gi|564287482|ref|YP_008429227.3| - 0.22 10.3 0.0 0.35 9.6 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF5010) TRAM PF01938.20 gi|564287482|ref|YP_008429227.3| - 0.4 10.7 2.9 1.1 9.4 2.9 1.8 1 1 0 1 1 1 0 TRAM domain ACT PF01842.25 gi|530548684|ref|YP_008429228.1| - 4.3e-07 29.6 0.1 7.5e-07 28.8 0.1 1.4 1 0 0 1 1 1 1 ACT domain ACT_7 PF13840.6 gi|530548684|ref|YP_008429228.1| - 0.013 15.3 0.1 0.023 14.5 0.1 1.4 1 0 0 1 1 1 0 ACT domain ACT_4 PF13291.6 gi|530548684|ref|YP_008429228.1| - 0.045 14.3 0.2 0.2 12.3 0.2 2.0 1 1 0 1 1 1 0 ACT domain HU-CCDC81_euk_2 PF18289.1 gi|530548684|ref|YP_008429228.1| - 0.082 13.1 0.0 0.19 11.9 0.0 1.6 1 0 0 1 1 1 0 CCDC81 eukaryotic HU domain 2 MNHE PF01899.16 gi|530548685|ref|YP_008429229.1| - 2.9e-48 163.3 0.3 3.3e-48 163.2 0.3 1.0 1 0 0 1 1 1 1 Na+/H+ ion antiporter subunit SirB PF04247.12 gi|530548685|ref|YP_008429229.1| - 0.089 12.9 1.5 0.14 12.3 1.5 1.2 1 0 0 1 1 1 0 Invasion gene expression up-regulator, SirB MrpF_PhaF PF04066.13 gi|530548686|ref|YP_008429230.1| - 2.7e-20 72.5 12.9 2.7e-20 72.5 12.9 2.0 2 0 0 2 2 2 1 Multiple resistance and pH regulation protein F (MrpF / PhaF) IncD PF17628.2 gi|530548686|ref|YP_008429230.1| - 0.018 14.8 3.2 0.02 14.7 3.2 1.2 1 0 0 1 1 1 0 Inclusion membrane protein D DUF2417 PF10329.9 gi|530548686|ref|YP_008429230.1| - 0.37 10.2 4.5 0.43 9.9 4.5 1.0 1 0 0 1 1 1 0 Region of unknown function (DUF2417) DUF1700 PF08006.11 gi|530548686|ref|YP_008429230.1| - 2.1 7.8 5.8 2.3 7.7 5.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1700) PhaG_MnhG_YufB PF03334.14 gi|530548687|ref|YP_008429231.1| - 1.6e-24 85.9 4.8 2e-24 85.6 4.8 1.1 1 0 0 1 1 1 1 Na+/H+ antiporter subunit DUF4040 PF13244.6 gi|530548688|ref|YP_008429232.1| - 5.7e-18 64.8 11.0 7e-18 64.5 11.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4040) TspO_MBR PF03073.15 gi|530548688|ref|YP_008429232.1| - 0.0085 16.2 6.4 0.011 15.8 6.4 1.1 1 0 0 1 1 1 1 TspO/MBR family DUF2070 PF09843.9 gi|530548688|ref|YP_008429232.1| - 0.76 8.0 5.5 0.84 7.9 5.5 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) DUF2721 PF11026.8 gi|530548688|ref|YP_008429232.1| - 0.97 9.3 9.9 0.29 11.0 6.6 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2721) MnhB PF04039.13 gi|530548689|ref|YP_008429233.1| - 3e-23 82.5 13.9 3e-23 82.5 13.9 2.1 2 1 0 2 2 2 1 Domain related to MnhB subunit of Na+/H+ antiporter DUF5134 PF17197.4 gi|530548689|ref|YP_008429233.1| - 0.046 13.6 3.1 0.26 11.2 1.0 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF5134) DUF2157 PF09925.9 gi|530548689|ref|YP_008429233.1| - 5.1 6.9 10.0 0.59 9.9 1.2 2.8 2 1 1 3 3 3 0 Predicted membrane protein (DUF2157) Oxidored_q2 PF00420.24 gi|530548690|ref|YP_008429234.1| - 1.2e-32 111.6 2.7 1.5e-32 111.4 2.7 1.0 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DUF2108 PF09881.9 gi|530548690|ref|YP_008429234.1| - 0.0016 18.4 1.7 0.0016 18.4 1.7 1.8 2 0 0 2 2 2 1 Predicted membrane protein (DUF2108) Proton_antipo_M PF00361.20 gi|530548691|ref|YP_008429235.1| - 7.9e-62 209.1 25.7 7.9e-62 209.1 25.7 2.5 3 0 0 3 3 3 1 Proton-conducting membrane transporter NADHdeh_related PF10125.9 gi|530548691|ref|YP_008429235.1| - 2.5e-06 27.1 10.7 2.5e-06 27.1 10.7 2.8 3 2 0 3 3 3 1 NADH dehydrogenase I, subunit N related protein PIRT PF15099.6 gi|530548691|ref|YP_008429235.1| - 0.014 15.0 0.2 0.014 15.0 0.2 3.1 4 0 0 4 4 4 0 Phosphoinositide-interacting protein family DUF3318 PF11780.8 gi|530548691|ref|YP_008429235.1| - 0.15 12.0 1.0 1.6 8.6 0.0 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3318) Proton_antipo_M PF00361.20 gi|530548692|ref|YP_008429236.1| - 3.1e-61 207.1 32.1 3.1e-61 207.1 32.1 1.7 2 0 0 2 2 2 1 Proton-conducting membrane transporter Trp_oprn_chp PF09534.10 gi|530548692|ref|YP_008429236.1| - 1.3 8.8 12.1 2.2 8.0 0.0 4.8 4 1 1 5 5 5 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) NADHdh PF00146.21 gi|530548693|ref|YP_008429237.1| - 1.3e-51 175.7 27.8 1.5e-51 175.5 27.8 1.0 1 0 0 1 1 1 1 NADH dehydrogenase Oxidored_q6 PF01058.22 gi|530548694|ref|YP_008429238.1| - 4.4e-19 68.6 0.0 6.2e-19 68.1 0.0 1.2 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit RE_NgoFVII PF09565.10 gi|530548694|ref|YP_008429238.1| - 0.034 13.5 0.0 0.048 13.0 0.0 1.2 1 0 0 1 1 1 0 NgoFVII restriction endonuclease Complex1_30kDa PF00329.19 gi|530548695|ref|YP_008429239.1| - 1.5e-22 80.5 0.5 1.9e-22 80.2 0.5 1.1 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Complex1_49kDa PF00346.19 gi|530548696|ref|YP_008429240.1| - 1.7e-72 243.8 0.0 1.4e-70 237.5 0.0 2.2 1 1 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Fer4 PF00037.27 gi|530548697|ref|YP_008429241.1| - 1e-13 50.5 10.5 7.6e-08 31.9 1.9 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|530548697|ref|YP_008429241.1| - 4.2e-11 43.3 11.3 8e-11 42.4 11.3 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|530548697|ref|YP_008429241.1| - 2e-10 40.6 19.3 9.3e-08 32.1 9.7 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|530548697|ref|YP_008429241.1| - 7.1e-09 36.5 5.1 0.00062 20.7 0.1 2.7 3 0 0 3 3 2 2 4Fe-4S double cluster binding domain Fer4_10 PF13237.6 gi|530548697|ref|YP_008429241.1| - 5.6e-08 32.8 19.3 5e-06 26.5 11.4 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|530548697|ref|YP_008429241.1| - 6.2e-08 32.7 9.6 1.1e-07 31.9 9.6 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|530548697|ref|YP_008429241.1| - 5.3e-05 23.7 9.6 0.017 15.6 1.4 2.3 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|530548697|ref|YP_008429241.1| - 7.1e-05 22.7 13.9 0.0096 16.0 4.4 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|530548697|ref|YP_008429241.1| - 0.00028 20.8 14.6 0.004 17.2 1.9 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.6 gi|530548697|ref|YP_008429241.1| - 0.00049 20.8 5.6 0.36 11.6 0.8 2.5 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|530548697|ref|YP_008429241.1| - 0.0006 20.3 7.5 0.12 12.9 2.1 2.5 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_18 PF13746.6 gi|530548697|ref|YP_008429241.1| - 0.0019 18.4 9.2 0.049 13.8 1.5 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|530548697|ref|YP_008429241.1| - 0.0021 18.9 17.6 0.027 15.4 4.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_22 PF17179.4 gi|530548697|ref|YP_008429241.1| - 0.0028 18.5 3.9 0.24 12.3 0.4 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|530548697|ref|YP_008429241.1| - 0.029 14.9 14.1 0.3 11.7 3.6 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_8 PF13183.6 gi|530548697|ref|YP_008429241.1| - 0.04 14.4 13.4 1.5 9.3 13.6 2.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_20 PF14691.6 gi|530548697|ref|YP_008429241.1| - 7.3 6.4 9.0 6.8 6.5 1.2 2.3 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AGOG PF09171.10 gi|530548698|ref|YP_008429242.1| - 1.6e-85 286.4 0.1 2.2e-85 285.9 0.1 1.2 1 0 0 1 1 1 1 N-glycosylase/DNA lyase SAP PF02037.27 gi|530548698|ref|YP_008429242.1| - 0.037 13.8 0.4 0.38 10.6 0.1 2.5 2 0 0 2 2 2 0 SAP domain HeH PF12949.7 gi|530548698|ref|YP_008429242.1| - 0.08 12.7 0.0 3.3 7.5 0.0 2.5 2 0 0 2 2 2 0 HeH/LEM domain HTH_45 PF14947.6 gi|530548698|ref|YP_008429242.1| - 0.085 12.8 0.1 0.16 12.0 0.1 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix AhpC-TSA PF00578.21 gi|530548699|ref|YP_008429243.1| - 3.8e-31 107.6 0.0 5.5e-31 107.1 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|530548699|ref|YP_008429243.1| - 5.5e-15 55.3 0.0 7.3e-15 55.0 0.0 1.1 1 0 0 1 1 1 1 Redoxin 1-cysPrx_C PF10417.9 gi|530548699|ref|YP_008429243.1| - 3.1e-09 36.5 0.2 5.3e-09 35.8 0.2 1.4 1 0 0 1 1 1 1 C-terminal domain of 1-Cys peroxiredoxin POR_N PF01855.19 gi|530548700|ref|YP_008429244.1| - 1.2e-58 198.6 0.0 1.8e-58 198.0 0.0 1.2 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.18 gi|530548700|ref|YP_008429244.1| - 1e-31 110.4 0.8 1.8e-31 109.5 0.1 1.8 2 0 0 2 2 2 1 Pyruvate ferredoxin/flavodoxin oxidoreductase PFOR_II PF17147.4 gi|530548700|ref|YP_008429244.1| - 0.00022 21.5 0.0 0.00068 19.9 0.0 1.9 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II TPP_enzyme_N PF02776.18 gi|530548700|ref|YP_008429244.1| - 0.002 17.8 0.4 0.0056 16.3 0.4 1.6 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Chordopox_A20R PF05941.13 gi|530548700|ref|YP_008429244.1| - 0.12 11.3 0.2 1.2 8.0 0.1 2.5 3 0 0 3 3 3 0 Chordopoxvirus A20R protein TPP_enzyme_C PF02775.21 gi|530548701|ref|YP_008429245.1| - 9.8e-32 109.9 0.2 2.6e-31 108.5 0.2 1.6 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.8 gi|530548701|ref|YP_008429245.1| - 1.8e-24 85.6 1.4 2.6e-24 85.1 0.8 1.6 2 0 0 2 2 2 1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal Pet100 PF09803.9 gi|530548701|ref|YP_008429245.1| - 0.0029 18.1 1.2 2.1 8.9 0.1 2.4 2 0 0 2 2 2 2 Pet100 AhpC-TSA PF00578.21 gi|530548702|ref|YP_008429246.1| - 1.1e-34 119.0 0.0 1.3e-34 118.8 0.0 1.0 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|530548702|ref|YP_008429246.1| - 2.9e-22 79.0 0.0 3.2e-22 78.8 0.0 1.0 1 0 0 1 1 1 1 Redoxin SCO1-SenC PF02630.14 gi|530548702|ref|YP_008429246.1| - 1.3e-05 25.1 0.0 1.9e-05 24.6 0.0 1.2 1 0 0 1 1 1 1 SCO1/SenC GSHPx PF00255.19 gi|530548702|ref|YP_008429246.1| - 0.014 14.9 0.0 0.02 14.5 0.0 1.2 1 0 0 1 1 1 0 Glutathione peroxidase Lactamase_B PF00753.27 gi|530548703|ref|YP_008429247.1| - 5.2e-08 33.1 0.7 1.2e-07 32.0 0.6 1.7 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|530548703|ref|YP_008429247.1| - 3.1e-06 26.9 0.1 4.8e-06 26.2 0.1 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Flavodoxin_1 PF00258.25 gi|530548703|ref|YP_008429247.1| - 0.00079 19.7 0.0 0.0014 18.8 0.0 1.5 1 0 0 1 1 1 1 Flavodoxin PrlF_antitoxin PF15937.5 gi|530548703|ref|YP_008429247.1| - 0.099 13.1 0.0 0.24 11.9 0.0 1.6 1 0 0 1 1 1 0 prlF antitoxin for toxin YhaV_toxin DUF1122 PF06557.11 gi|530548704|ref|YP_008429248.1| - 1.3e-58 197.3 0.3 1.7e-58 197.0 0.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1122) CheR PF01739.18 gi|530548704|ref|YP_008429248.1| - 0.034 13.6 0.0 0.052 13.0 0.0 1.2 1 0 0 1 1 1 0 CheR methyltransferase, SAM binding domain Rubrerythrin PF02915.17 gi|530548706|ref|YP_008429250.1| - 0.0009 19.6 0.1 0.0009 19.6 0.1 1.1 1 0 0 1 1 1 1 Rubrerythrin Rubrerythrin PF02915.17 gi|530548707|ref|YP_008429251.1| - 2.7e-18 66.7 3.6 4e-18 66.1 3.6 1.3 1 0 0 1 1 1 1 Rubrerythrin Ferritin_2 PF13668.6 gi|530548707|ref|YP_008429251.1| - 0.0069 16.6 5.1 0.015 15.5 1.0 2.2 1 1 1 2 2 2 2 Ferritin-like domain DUF2202 PF09968.9 gi|530548707|ref|YP_008429251.1| - 0.037 13.9 1.0 2.8 7.8 0.0 2.2 2 0 0 2 2 2 0 Uncharacterized protein domain (DUF2202) Ald_deCOase PF11266.8 gi|530548707|ref|YP_008429251.1| - 0.15 11.8 1.4 1.5 8.4 0.1 2.1 2 0 0 2 2 2 0 Long-chain fatty aldehyde decarbonylase Pyr_redox_2 PF07992.14 gi|530548708|ref|YP_008429252.1| - 6.9e-55 186.3 0.7 8.6e-55 186.0 0.7 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|530548708|ref|YP_008429252.1| - 3.7e-23 81.9 3.5 8.2e-19 68.0 0.4 3.2 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|530548708|ref|YP_008429252.1| - 1.1e-08 34.7 0.1 3.3e-06 26.6 0.0 2.1 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|530548708|ref|YP_008429252.1| - 1.8e-06 27.8 0.3 0.39 10.2 0.3 4.0 4 0 0 4 4 4 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|530548708|ref|YP_008429252.1| - 1.7e-05 24.3 0.3 0.012 14.9 0.1 2.3 2 0 0 2 2 2 2 FAD binding domain Rubredoxin_C PF18267.1 gi|530548708|ref|YP_008429252.1| - 0.0003 20.7 2.8 0.0003 20.7 0.6 2.2 2 0 0 2 2 2 1 Rubredoxin NAD+ reductase C-terminal domain K_oxygenase PF13434.6 gi|530548708|ref|YP_008429252.1| - 0.00039 19.7 0.0 0.0018 17.5 0.0 1.8 2 0 0 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) TrkA_N PF02254.18 gi|530548708|ref|YP_008429252.1| - 0.00048 20.4 0.7 2.1 8.6 0.0 3.2 3 0 0 3 3 3 2 TrkA-N domain NAD_binding_7 PF13241.6 gi|530548708|ref|YP_008429252.1| - 0.0018 18.7 0.0 0.09 13.2 0.0 2.6 2 1 0 2 2 2 1 Putative NAD(P)-binding ApbA PF02558.16 gi|530548708|ref|YP_008429252.1| - 0.0024 17.6 0.5 0.017 14.8 0.3 2.3 2 1 0 2 2 2 1 Ketopantoate reductase PanE/ApbA Lycopene_cycl PF05834.12 gi|530548708|ref|YP_008429252.1| - 0.0038 16.3 0.2 1.3 8.0 0.1 2.3 2 0 0 2 2 2 2 Lycopene cyclase protein FAD_binding_2 PF00890.24 gi|530548708|ref|YP_008429252.1| - 0.0089 15.1 3.3 1.4 7.9 0.4 3.5 4 0 0 4 4 4 1 FAD binding domain 3HCDH_N PF02737.18 gi|530548708|ref|YP_008429252.1| - 0.012 15.5 0.3 0.022 14.7 0.0 1.6 2 0 0 2 2 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GIDA PF01134.22 gi|530548708|ref|YP_008429252.1| - 0.015 14.4 0.7 0.084 11.9 0.1 2.3 3 0 0 3 3 3 0 Glucose inhibited division protein A HI0933_like PF03486.14 gi|530548708|ref|YP_008429252.1| - 0.025 13.3 0.1 4.4 5.9 0.1 3.0 3 0 0 3 3 3 0 HI0933-like protein NAD_binding_8 PF13450.6 gi|530548708|ref|YP_008429252.1| - 0.027 14.7 0.5 0.45 10.8 0.6 2.5 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain DUF3725 PF12523.8 gi|530548708|ref|YP_008429252.1| - 0.048 14.0 0.1 0.34 11.2 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3725) ThiF PF00899.21 gi|530548708|ref|YP_008429252.1| - 0.071 12.4 0.2 0.85 8.9 0.1 2.2 2 0 0 2 2 2 0 ThiF family Thi4 PF01946.17 gi|530548708|ref|YP_008429252.1| - 0.094 11.9 1.8 7.5 5.7 0.0 2.9 3 0 0 3 3 3 0 Thi4 family Rubrerythrin PF02915.17 gi|530548709|ref|YP_008429253.1| - 9.4e-27 94.1 9.1 1.6e-25 90.1 9.1 2.1 1 1 0 1 1 1 1 Rubrerythrin Ferritin PF00210.24 gi|530548709|ref|YP_008429253.1| - 0.00014 21.8 6.8 0.00033 20.6 6.8 1.5 1 1 0 1 1 1 1 Ferritin-like domain zinc_ribbon_15 PF17032.5 gi|530548709|ref|YP_008429253.1| - 0.0036 18.0 0.3 0.0056 17.4 0.3 1.3 1 0 0 1 1 1 1 zinc-ribbon family Cys_rich_CPCC PF14206.6 gi|530548709|ref|YP_008429253.1| - 0.0084 15.9 4.0 0.03 14.1 2.6 2.2 2 0 0 2 2 2 1 Cysteine-rich CPCC DZR PF12773.7 gi|530548709|ref|YP_008429253.1| - 0.0094 16.0 0.1 0.015 15.3 0.1 1.3 1 0 0 1 1 1 1 Double zinc ribbon DNA_ligase_ZBD PF03119.16 gi|530548709|ref|YP_008429253.1| - 0.019 15.0 4.0 1.5 8.9 0.3 2.5 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zinc_ribbon_2 PF13240.6 gi|530548709|ref|YP_008429253.1| - 0.022 14.5 2.7 0.061 13.1 2.7 1.8 1 1 0 1 1 1 0 zinc-ribbon domain 3Beta_HSD PF01073.19 gi|530548709|ref|YP_008429253.1| - 0.063 12.3 0.1 0.072 12.1 0.1 1.2 1 0 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family Zn-ribbon_8 PF09723.10 gi|530548709|ref|YP_008429253.1| - 0.065 13.4 2.8 1.1 9.4 2.7 2.4 1 1 1 2 2 2 0 Zinc ribbon domain Exonuc_X-T_C PF08411.10 gi|530548709|ref|YP_008429253.1| - 0.066 12.3 0.0 0.11 11.6 0.0 1.3 1 0 0 1 1 1 0 Exonuclease C-terminal zf-ribbon_3 PF13248.6 gi|530548709|ref|YP_008429253.1| - 0.085 12.3 3.1 1.8 8.1 0.5 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-FPG_IleRS PF06827.14 gi|530548709|ref|YP_008429253.1| - 0.12 12.2 2.1 4.9 7.1 0.2 2.8 3 0 0 3 3 3 0 Zinc finger found in FPG and IleRS Nudix_N_2 PF14803.6 gi|530548709|ref|YP_008429253.1| - 0.13 12.2 1.8 6.1 6.8 0.2 2.4 2 0 0 2 2 2 0 Nudix N-terminal FdhE PF04216.12 gi|530548709|ref|YP_008429253.1| - 0.19 11.6 3.8 1.9 8.3 0.1 2.2 1 1 1 2 2 2 0 Protein involved in formate dehydrogenase formation RecR PF02132.15 gi|530548709|ref|YP_008429253.1| - 0.22 11.1 0.3 0.55 9.8 0.3 1.7 1 0 0 1 1 1 0 RecR protein zf-NADH-PPase PF09297.11 gi|530548709|ref|YP_008429253.1| - 0.31 10.7 1.5 3 7.6 0.1 2.3 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Rubredoxin PF00301.20 gi|530548709|ref|YP_008429253.1| - 0.43 10.7 6.0 2.2 8.4 0.5 2.3 1 1 1 2 2 2 0 Rubredoxin Prim_Zn_Ribbon PF08273.12 gi|530548709|ref|YP_008429253.1| - 1.2 9.5 2.9 19 5.6 0.2 2.3 2 0 0 2 2 2 0 Zinc-binding domain of primase-helicase Zn-C2H2_12 PF18112.1 gi|530548709|ref|YP_008429253.1| - 3.2 8.3 5.0 16 6.0 0.5 2.7 2 0 0 2 2 2 0 Autophagy receptor zinc finger-C2H2 domain Auto_anti-p27 PF06677.12 gi|530548709|ref|YP_008429253.1| - 8 6.7 6.4 9.6 6.5 0.6 2.2 1 1 2 3 3 3 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Rubredoxin PF00301.20 gi|530548710|ref|YP_008429254.1| - 4.1e-26 90.7 4.5 4.5e-26 90.6 4.5 1.0 1 0 0 1 1 1 1 Rubredoxin zf-RanBP PF00641.18 gi|530548710|ref|YP_008429254.1| - 0.001 18.3 3.8 0.34 10.2 0.2 2.2 2 0 0 2 2 2 2 Zn-finger in Ran binding protein and others zf-Sec23_Sec24 PF04810.15 gi|530548710|ref|YP_008429254.1| - 0.0013 18.8 0.3 0.25 11.4 0.0 2.1 2 0 0 2 2 2 2 Sec23/Sec24 zinc finger Vps36-NZF-N PF16988.5 gi|530548710|ref|YP_008429254.1| - 0.0037 16.6 1.7 0.37 10.2 0.0 2.1 2 0 0 2 2 2 2 Vacuolar protein sorting 36 NZF-N zinc-finger domain A2L_zn_ribbon PF08792.10 gi|530548710|ref|YP_008429254.1| - 0.0085 15.8 1.0 2.6 7.9 0.0 2.1 2 0 0 2 2 2 2 A2L zinc ribbon domain zinc_ribbon_10 PF10058.9 gi|530548710|ref|YP_008429254.1| - 0.014 15.1 0.4 0.93 9.3 0.0 2.1 2 0 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein PHD_4 PF16866.5 gi|530548710|ref|YP_008429254.1| - 0.027 14.5 2.1 0.086 12.9 2.1 1.8 1 1 0 1 1 1 0 PHD-finger Prok-RING_1 PF14446.6 gi|530548710|ref|YP_008429254.1| - 0.077 12.9 2.5 1 9.3 2.5 2.0 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 TF_Zn_Ribbon PF08271.12 gi|530548710|ref|YP_008429254.1| - 0.081 12.5 1.7 7.8 6.1 0.0 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding ADK_lid PF05191.14 gi|530548710|ref|YP_008429254.1| - 0.15 12.1 1.7 1.1 9.2 1.7 2.0 1 1 0 1 1 1 0 Adenylate kinase, active site lid zf-MIZ PF02891.20 gi|530548710|ref|YP_008429254.1| - 0.17 11.7 3.4 1.8 8.4 0.2 2.1 2 0 0 2 2 2 0 MIZ/SP-RING zinc finger RbpA PF13397.6 gi|530548710|ref|YP_008429254.1| - 0.33 11.6 0.5 3.3 8.4 0.1 2.0 1 1 1 2 2 2 0 RNA polymerase-binding protein Zn_ribbon_SprT PF17283.2 gi|530548710|ref|YP_008429254.1| - 0.64 10.0 4.0 4.9 7.1 0.1 2.1 2 0 0 2 2 2 0 SprT-like zinc ribbon domain Desulfoferrodox PF01880.18 gi|530548711|ref|YP_008429255.1| - 5e-32 110.4 0.3 5.8e-32 110.2 0.3 1.0 1 0 0 1 1 1 1 Desulfoferrodoxin Rubrerythrin PF02915.17 gi|530548713|ref|YP_008429257.1| - 2.2e-25 89.6 9.6 2.6e-25 89.4 9.6 1.1 1 0 0 1 1 1 1 Rubrerythrin Ferritin PF00210.24 gi|530548713|ref|YP_008429257.1| - 0.00033 20.6 1.6 0.13 12.2 0.2 2.1 2 0 0 2 2 2 2 Ferritin-like domain Mn_catalase PF05067.12 gi|530548713|ref|YP_008429257.1| - 0.0013 17.8 0.5 0.0079 15.2 0.1 1.9 1 1 1 2 2 2 1 Manganese containing catalase Ferritin_2 PF13668.6 gi|530548713|ref|YP_008429257.1| - 0.0034 17.6 2.2 0.08 13.1 0.1 2.1 1 1 1 2 2 2 2 Ferritin-like domain DUF2383 PF09537.10 gi|530548713|ref|YP_008429257.1| - 0.0081 16.5 0.5 0.19 12.1 0.1 2.3 2 0 0 2 2 2 1 Domain of unknown function (DUF2383) Fmp27_WPPW PF10359.9 gi|530548713|ref|YP_008429257.1| - 0.084 11.7 0.1 0.24 10.2 0.1 1.6 1 1 1 2 2 2 0 RNA pol II promoter Fmp27 protein domain CofC PF01983.16 gi|530548713|ref|YP_008429257.1| - 0.11 11.7 0.0 0.21 10.7 0.0 1.4 1 0 0 1 1 1 0 Guanylyl transferase CofC like RuBisCO_large PF00016.20 gi|530548714|ref|YP_008429258.1| - 4.4e-97 324.9 0.0 5.3e-97 324.6 0.0 1.1 1 0 0 1 1 1 1 Ribulose bisphosphate carboxylase large chain, catalytic domain RuBisCO_large_N PF02788.16 gi|530548714|ref|YP_008429258.1| - 2.6e-44 150.2 0.0 8.9e-44 148.5 0.0 1.9 2 0 0 2 2 2 1 Ribulose bisphosphate carboxylase large chain, N-terminal domain LigA PF07746.11 gi|530548714|ref|YP_008429258.1| - 0.011 15.8 0.1 2.3 8.4 0.0 2.5 2 0 0 2 2 2 0 Aromatic-ring-opening dioxygenase LigAB, LigA subunit Zip PF02535.22 gi|530548715|ref|YP_008429259.1| - 1.3e-24 87.1 26.1 1.5e-20 73.7 7.1 2.7 1 1 0 2 2 2 2 ZIP Zinc transporter SRTM1 PF15872.5 gi|530548715|ref|YP_008429259.1| - 0.27 11.4 1.8 0.65 10.2 1.8 1.7 1 0 0 1 1 1 0 Serine-rich and transmembrane domain-containing protein 1 Halogen_Hydrol PF10112.9 gi|530548715|ref|YP_008429259.1| - 3.1 7.8 8.5 2.1 8.3 0.7 2.8 2 1 0 2 2 2 0 5-bromo-4-chloroindolyl phosphate hydrolysis protein OpuAC PF04069.12 gi|530548716|ref|YP_008429260.1| - 4.5e-70 236.2 0.3 5.2e-70 236.0 0.3 1.0 1 0 0 1 1 1 1 Substrate binding domain of ABC-type glycine betaine transport system ABC_tran PF00005.27 gi|530547461|ref|YP_008429261.1| - 6.8e-36 123.8 0.0 1.1e-35 123.1 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|530547461|ref|YP_008429261.1| - 4.3e-10 39.9 0.6 0.00039 20.3 0.0 2.4 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|530547461|ref|YP_008429261.1| - 1.2e-06 29.0 0.0 3e-06 27.7 0.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain CBS PF00571.28 gi|530547461|ref|YP_008429261.1| - 2.6e-06 27.8 0.0 0.00016 22.1 0.0 2.9 1 1 1 2 2 2 1 CBS domain SMC_N PF02463.19 gi|530547461|ref|YP_008429261.1| - 4.6e-05 23.0 0.0 0.0093 15.4 0.0 2.3 1 1 1 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|530547461|ref|YP_008429261.1| - 0.0002 21.0 0.0 0.00035 20.3 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_5 PF07728.14 gi|530547461|ref|YP_008429261.1| - 0.00054 20.0 0.0 0.0011 19.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_30 PF13604.6 gi|530547461|ref|YP_008429261.1| - 0.00055 19.7 0.0 0.0011 18.7 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|530547461|ref|YP_008429261.1| - 0.00069 19.9 0.1 0.0014 18.9 0.1 1.8 1 1 0 1 1 1 1 AAA domain Mg_chelatase PF01078.21 gi|530547461|ref|YP_008429261.1| - 0.00086 18.7 0.0 0.0016 17.9 0.0 1.4 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI NACHT PF05729.12 gi|530547461|ref|YP_008429261.1| - 0.0023 17.9 0.0 0.0043 17.0 0.0 1.5 1 0 0 1 1 1 1 NACHT domain TIP49 PF06068.13 gi|530547461|ref|YP_008429261.1| - 0.004 16.4 1.1 0.066 12.4 0.0 2.1 2 0 0 2 2 2 1 TIP49 P-loop domain G-alpha PF00503.20 gi|530547461|ref|YP_008429261.1| - 0.005 16.0 0.0 0.0056 15.9 0.0 1.2 1 0 0 1 1 1 1 G-protein alpha subunit AAA_33 PF13671.6 gi|530547461|ref|YP_008429261.1| - 0.0064 16.7 0.0 0.019 15.1 0.0 1.8 2 0 0 2 2 1 1 AAA domain RsgA_GTPase PF03193.16 gi|530547461|ref|YP_008429261.1| - 0.0065 16.4 0.1 0.02 14.8 0.0 1.8 2 0 0 2 2 2 1 RsgA GTPase AAA_24 PF13479.6 gi|530547461|ref|YP_008429261.1| - 0.01 15.6 0.0 0.1 12.3 0.0 2.2 2 0 0 2 2 2 0 AAA domain Rad17 PF03215.15 gi|530547461|ref|YP_008429261.1| - 0.012 15.6 0.0 0.025 14.5 0.0 1.6 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_15 PF13175.6 gi|530547461|ref|YP_008429261.1| - 0.014 15.2 0.2 0.029 14.1 0.0 1.6 2 0 0 2 2 2 0 AAA ATPase domain AAA_18 PF13238.6 gi|530547461|ref|YP_008429261.1| - 0.014 16.0 0.1 0.066 13.8 0.0 2.1 2 0 0 2 2 2 0 AAA domain T2SSE PF00437.20 gi|530547461|ref|YP_008429261.1| - 0.02 14.0 0.2 0.043 12.9 0.0 1.6 2 0 0 2 2 2 0 Type II/IV secretion system protein AAA_23 PF13476.6 gi|530547461|ref|YP_008429261.1| - 0.021 15.3 1.6 0.046 14.2 0.1 2.0 2 0 0 2 2 2 0 AAA domain cobW PF02492.19 gi|530547461|ref|YP_008429261.1| - 0.023 14.3 0.0 0.048 13.3 0.0 1.6 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_27 PF13514.6 gi|530547461|ref|YP_008429261.1| - 0.025 14.2 0.0 0.063 12.9 0.0 1.6 2 0 0 2 2 2 0 AAA domain ATPase_2 PF01637.18 gi|530547461|ref|YP_008429261.1| - 0.031 14.2 0.0 0.076 12.9 0.0 1.6 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_25 PF13481.6 gi|530547461|ref|YP_008429261.1| - 0.032 13.8 0.1 0.15 11.7 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA PF00004.29 gi|530547461|ref|YP_008429261.1| - 0.044 14.2 0.0 0.12 12.8 0.0 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) PduV-EutP PF10662.9 gi|530547461|ref|YP_008429261.1| - 0.061 13.1 0.0 0.22 11.2 0.1 1.8 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation AAA_19 PF13245.6 gi|530547461|ref|YP_008429261.1| - 0.066 13.6 0.0 0.16 12.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain TsaE PF02367.17 gi|530547461|ref|YP_008429261.1| - 0.079 13.0 0.1 0.2 11.7 0.0 1.7 2 0 0 2 2 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE NTPase_1 PF03266.15 gi|530547461|ref|YP_008429261.1| - 0.13 12.2 0.9 0.42 10.5 0.0 2.2 3 0 0 3 3 2 0 NTPase Zeta_toxin PF06414.12 gi|530547461|ref|YP_008429261.1| - 0.13 11.5 0.0 0.24 10.6 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin AAA_14 PF13173.6 gi|530547461|ref|YP_008429261.1| - 0.14 12.2 0.0 0.28 11.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|530547461|ref|YP_008429261.1| - 0.16 12.2 0.0 0.36 11.1 0.0 1.6 1 0 0 1 1 1 0 AAA domain BPD_transp_1 PF00528.22 gi|530548717|ref|YP_008429262.1| - 6.1e-20 71.7 5.9 7.8e-20 71.4 5.9 1.1 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component HTH_AsnC-type PF13404.6 gi|530548717|ref|YP_008429262.1| - 0.041 13.7 0.1 0.085 12.7 0.1 1.5 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain ATPase_gene1 PF09527.10 gi|530548717|ref|YP_008429262.1| - 0.11 12.6 1.6 0.26 11.5 1.6 1.7 1 1 0 1 1 1 0 Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter BPD_transp_1 PF00528.22 gi|530548718|ref|YP_008429263.1| - 6e-25 88.1 14.6 7.8e-25 87.7 14.6 1.1 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component OpuAC PF04069.12 gi|530548719|ref|YP_008429264.1| - 4.7e-46 157.4 0.0 5.5e-46 157.2 0.0 1.0 1 0 0 1 1 1 1 Substrate binding domain of ABC-type glycine betaine transport system FliG_M PF14841.6 gi|530548719|ref|YP_008429264.1| - 0.023 14.9 0.0 0.046 13.9 0.0 1.5 1 0 0 1 1 1 0 FliG middle domain DUF2018 PF09442.10 gi|530548719|ref|YP_008429264.1| - 0.11 13.4 0.0 0.26 12.3 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF2018) MS_channel PF00924.18 gi|530548720|ref|YP_008429265.1| - 7e-51 172.7 1.0 1e-50 172.2 1.0 1.2 1 0 0 1 1 1 1 Mechanosensitive ion channel TM_helix PF05552.12 gi|530548720|ref|YP_008429265.1| - 0.00034 20.5 2.1 0.00034 20.5 2.1 2.7 2 1 1 3 3 3 1 Conserved TM helix Rubrerythrin PF02915.17 gi|530548721|ref|YP_008429266.1| - 9.5e-07 29.3 9.7 1.2e-06 28.9 9.7 1.1 1 0 0 1 1 1 1 Rubrerythrin DUF2383 PF09537.10 gi|530548721|ref|YP_008429266.1| - 2.6e-05 24.5 4.2 7.5e-05 23.0 0.2 2.6 3 0 0 3 3 3 1 Domain of unknown function (DUF2383) Ferritin_2 PF13668.6 gi|530548721|ref|YP_008429266.1| - 0.00012 22.3 1.3 0.00017 21.8 1.3 1.2 1 0 0 1 1 1 1 Ferritin-like domain ERp29 PF07749.12 gi|530548721|ref|YP_008429266.1| - 0.8 10.6 6.3 5.6 7.9 0.4 2.8 1 1 1 2 2 2 0 Endoplasmic reticulum protein ERp29, C-terminal domain DsrD PF08679.11 gi|530548722|ref|YP_008429267.1| - 0.047 14.0 0.3 0.41 10.9 0.1 2.4 2 0 0 2 2 2 0 Dissimilatory sulfite reductase D (DsrD) Linocin_M18 PF04454.12 gi|530548723|ref|YP_008429268.1| - 2.9e-20 72.7 0.0 4.6e-20 72.0 0.0 1.3 1 0 0 1 1 1 1 Encapsulating protein for peroxidase Rubrerythrin PF02915.17 gi|530548723|ref|YP_008429268.1| - 5.2e-07 30.1 1.9 9.1e-07 29.3 1.9 1.5 1 0 0 1 1 1 1 Rubrerythrin DUF2383 PF09537.10 gi|530548723|ref|YP_008429268.1| - 0.0047 17.3 0.1 0.012 15.9 0.1 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF2383) Ferritin PF00210.24 gi|530548723|ref|YP_008429268.1| - 0.0081 16.1 0.8 0.031 14.2 0.2 2.0 2 0 0 2 2 2 1 Ferritin-like domain Phage_capsid PF05065.13 gi|530548723|ref|YP_008429268.1| - 0.01 15.1 0.0 0.015 14.6 0.0 1.3 1 0 0 1 1 1 0 Phage capsid family DUF455 PF04305.14 gi|530548723|ref|YP_008429268.1| - 0.1 12.1 0.1 0.16 11.5 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF455) DUF2202 PF09968.9 gi|530548723|ref|YP_008429268.1| - 0.11 12.4 0.2 0.47 10.3 0.1 2.0 2 1 1 3 3 3 0 Uncharacterized protein domain (DUF2202) Herpes_IR6 PF06307.12 gi|530548723|ref|YP_008429268.1| - 0.16 11.5 0.0 0.33 10.5 0.0 1.5 1 0 0 1 1 1 0 Herpesvirus IR6 protein FUR PF01475.19 gi|564287483|ref|YP_008429271.3| - 1.6e-21 76.6 0.1 1.9e-21 76.4 0.1 1.0 1 0 0 1 1 1 1 Ferric uptake regulator family Dimerisation PF08100.11 gi|564287483|ref|YP_008429271.3| - 0.057 13.4 0.3 0.92 9.6 0.0 2.5 3 0 0 3 3 3 0 Dimerisation domain PadR PF03551.14 gi|564287483|ref|YP_008429271.3| - 0.062 13.3 0.1 0.22 11.5 0.0 1.9 2 0 0 2 2 2 0 Transcriptional regulator PadR-like family DUF2806 PF10987.8 gi|564287483|ref|YP_008429271.3| - 0.063 13.2 0.0 0.07 13.0 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2806) XPC-binding PF09280.11 gi|564287483|ref|YP_008429271.3| - 0.1 12.3 0.0 1.2 8.9 0.0 2.1 2 0 0 2 2 2 0 XPC-binding domain Rubrerythrin PF02915.17 gi|530548727|ref|YP_008429272.1| - 4.8e-16 59.4 16.8 5.6e-16 59.2 16.8 1.1 1 0 0 1 1 1 1 Rubrerythrin Ferritin_2 PF13668.6 gi|530548727|ref|YP_008429272.1| - 2.2e-07 31.1 4.9 0.002 18.3 0.6 2.1 2 0 0 2 2 2 2 Ferritin-like domain DUF2383 PF09537.10 gi|530548727|ref|YP_008429272.1| - 9.6e-07 29.1 3.8 0.00067 20.0 0.4 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF2383) DUF1657 PF07870.11 gi|530548727|ref|YP_008429272.1| - 0.014 15.3 1.8 1.1 9.2 0.6 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1657) SKA2 PF16740.5 gi|530548727|ref|YP_008429272.1| - 0.018 14.8 0.5 0.037 13.8 0.5 1.5 1 0 0 1 1 1 0 Spindle and kinetochore-associated protein 2 DUF2202 PF09968.9 gi|530548727|ref|YP_008429272.1| - 0.021 14.7 2.8 0.043 13.7 2.8 1.5 1 1 0 1 1 1 0 Uncharacterized protein domain (DUF2202) ECH_2 PF16113.5 gi|530548727|ref|YP_008429272.1| - 0.024 14.2 0.5 0.029 13.9 0.5 1.1 1 0 0 1 1 1 0 Enoyl-CoA hydratase/isomerase DUF3231 PF11553.8 gi|530548727|ref|YP_008429272.1| - 0.026 14.2 3.2 1.9 8.1 0.3 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3231) OS-D PF03392.13 gi|530548727|ref|YP_008429272.1| - 0.24 11.5 3.6 5.2 7.2 0.4 2.3 2 0 0 2 2 2 0 Insect pheromone-binding family, A10/OS-D AhpC-TSA PF00578.21 gi|530548728|ref|YP_008429273.1| - 2e-35 121.4 0.0 2.4e-35 121.2 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|530548728|ref|YP_008429273.1| - 1.7e-18 66.7 0.0 2.2e-18 66.4 0.0 1.0 1 0 0 1 1 1 1 Redoxin AhpC-TSA_2 PF13911.6 gi|530548728|ref|YP_008429273.1| - 1.9e-07 31.2 0.0 4.8e-07 29.9 0.0 1.6 1 1 0 1 1 1 1 AhpC/TSA antioxidant enzyme DUF899 PF05988.12 gi|530548728|ref|YP_008429273.1| - 0.00038 20.1 0.0 0.00042 19.9 0.0 1.1 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF899) Thioredoxin_8 PF13905.6 gi|530548728|ref|YP_008429273.1| - 0.00097 19.4 0.0 0.0013 19.0 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin-like SCO1-SenC PF02630.14 gi|530548728|ref|YP_008429273.1| - 0.053 13.4 0.0 0.08 12.9 0.0 1.2 1 0 0 1 1 1 0 SCO1/SenC DUF3970 PF13113.6 gi|530548728|ref|YP_008429273.1| - 0.062 13.5 0.4 15 5.8 0.0 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3970) Acetyltransf_1 PF00583.25 gi|530548729|ref|YP_008429274.1| - 2.6e-17 63.1 0.2 3.4e-17 62.8 0.2 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|530548729|ref|YP_008429274.1| - 1.1e-10 41.7 0.2 1.9e-10 41.0 0.2 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|530548729|ref|YP_008429274.1| - 3.1e-09 36.8 0.0 1.1e-08 35.1 0.0 1.8 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|530548729|ref|YP_008429274.1| - 2.9e-06 27.4 0.1 9.9e-06 25.7 0.1 2.0 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|530548729|ref|YP_008429274.1| - 0.00027 21.0 0.0 0.00043 20.4 0.0 1.6 1 1 0 1 1 1 1 GCN5-related N-acetyl-transferase FR47 PF08445.10 gi|530548729|ref|YP_008429274.1| - 0.0015 18.4 0.0 0.0024 17.8 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_3 PF13302.7 gi|530548729|ref|YP_008429274.1| - 0.0062 17.2 0.0 0.008 16.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_15 PF17013.5 gi|530548729|ref|YP_008429274.1| - 0.017 14.6 0.1 0.031 13.8 0.1 1.6 1 1 0 1 1 1 0 Putative acetyl-transferase EamA PF00892.20 gi|530548730|ref|YP_008429275.1| - 0.00024 21.3 6.6 0.00026 21.2 5.8 1.5 1 1 0 1 1 1 1 EamA-like transporter family DUF420 PF04238.12 gi|530548730|ref|YP_008429275.1| - 0.0031 17.8 12.9 0.0064 16.8 6.2 2.1 1 1 1 2 2 2 1 Protein of unknown function (DUF420) Transmemb_17 PF09799.9 gi|530548730|ref|YP_008429275.1| - 0.0062 17.1 5.1 0.0062 17.1 5.1 1.9 1 1 1 2 2 2 1 Predicted membrane protein CBP_BcsF PF11120.8 gi|530548730|ref|YP_008429275.1| - 0.045 13.9 3.8 0.063 13.4 0.0 2.3 2 0 0 2 2 2 0 Cellulose biosynthesis protein BcsF Keratin_assoc PF09775.9 gi|530548730|ref|YP_008429275.1| - 0.054 13.2 0.2 0.054 13.2 0.2 1.8 2 0 0 2 2 2 0 Keratinocyte-associated protein 2 Acyl_transf_3 PF01757.22 gi|530548730|ref|YP_008429275.1| - 0.098 11.7 14.1 0.23 10.5 14.1 1.5 1 1 0 1 1 1 0 Acyltransferase family Cytochrom_B561 PF03188.16 gi|530548730|ref|YP_008429275.1| - 0.13 12.4 14.9 0.22 11.6 2.9 2.9 1 1 2 3 3 3 0 Eukaryotic cytochrome b561 DUF4079 PF13301.6 gi|530548730|ref|YP_008429275.1| - 0.46 10.6 10.9 0.07 13.3 5.5 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF4079) DUF1772 PF08592.11 gi|530548730|ref|YP_008429275.1| - 0.58 10.5 7.5 0.9 9.9 1.0 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF1772) DUF4131 PF13567.6 gi|530548730|ref|YP_008429275.1| - 1.7 8.2 11.0 0.85 9.2 0.8 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4131) TMEM208_SND2 PF05620.11 gi|530548730|ref|YP_008429275.1| - 1.8 8.3 8.9 0.14 11.9 1.3 2.1 1 1 0 2 2 2 0 SRP-independent targeting protein 2/TMEM208 DOMON PF03351.17 gi|530548731|ref|YP_008429276.1| - 9.9e-30 103.3 0.0 1.6e-29 102.6 0.0 1.3 1 0 0 1 1 1 1 DOMON domain EB_dh PF09459.10 gi|530548731|ref|YP_008429276.1| - 3.4e-07 30.5 0.2 4.5e-07 30.1 0.2 1.2 1 0 0 1 1 1 1 Ethylbenzene dehydrogenase CDH-cyt PF16010.5 gi|530548731|ref|YP_008429276.1| - 0.02 14.6 0.4 0.055 13.2 0.1 1.9 1 1 1 2 2 2 0 Cytochrome domain of cellobiose dehydrogenase LPAM_1 PF08139.12 gi|530548731|ref|YP_008429276.1| - 5.2 7.7 5.3 0.96 10.1 1.1 1.9 2 0 0 2 2 2 0 Prokaryotic membrane lipoprotein lipid attachment site Rubrerythrin PF02915.17 gi|530548732|ref|YP_008429277.1| - 4.8e-13 49.7 18.2 8.7e-13 48.9 18.2 1.4 1 1 0 1 1 1 1 Rubrerythrin Ferritin_2 PF13668.6 gi|530548732|ref|YP_008429277.1| - 0.0052 17.0 4.7 0.016 15.4 4.7 1.7 1 1 0 1 1 1 1 Ferritin-like domain FAD_binding_1 PF00667.20 gi|530548732|ref|YP_008429277.1| - 0.029 14.0 3.9 0.095 12.3 1.2 2.1 1 1 1 2 2 2 0 FAD binding domain TMF_DNA_bd PF12329.8 gi|530548732|ref|YP_008429277.1| - 0.03 14.3 2.2 0.03 14.3 2.2 2.6 2 2 0 2 2 2 0 TATA element modulatory factor 1 DNA binding Ferritin PF00210.24 gi|530548732|ref|YP_008429277.1| - 0.066 13.1 12.0 0.34 10.9 11.2 2.0 1 1 0 1 1 1 0 Ferritin-like domain Fe_hyd_lg_C PF02906.14 gi|530548732|ref|YP_008429277.1| - 0.18 11.5 2.2 0.35 10.5 0.2 2.1 1 1 0 2 2 2 0 Iron only hydrogenase large subunit, C-terminal domain PNK3P PF08645.11 gi|530548732|ref|YP_008429277.1| - 0.66 9.7 4.6 0.69 9.6 0.6 2.1 1 1 1 2 2 2 0 Polynucleotide kinase 3 phosphatase Aldedh PF00171.22 gi|530548733|ref|YP_008429278.1| - 4e-104 348.7 0.0 5e-104 348.4 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.14 gi|530548733|ref|YP_008429278.1| - 0.002 17.2 0.0 0.0069 15.5 0.0 1.9 1 1 0 1 1 1 1 Acyl-CoA reductase (LuxC) DUF1487 PF07368.11 gi|530548733|ref|YP_008429278.1| - 0.14 11.6 0.0 0.23 10.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1487) Hydrolase_3 PF08282.12 gi|530548733|ref|YP_008429278.1| - 0.14 11.9 0.3 0.34 10.6 0.2 1.6 2 0 0 2 2 2 0 haloacid dehalogenase-like hydrolase Aldedh PF00171.22 gi|564287484|ref|YP_008429279.3| - 0.088 11.3 0.1 0.094 11.2 0.1 1.0 1 0 0 1 1 1 0 Aldehyde dehydrogenase family Resolvase PF00239.21 gi|530547462|ref|YP_008429280.1| - 1e-24 87.3 0.2 1.3e-24 86.9 0.2 1.1 1 0 0 1 1 1 1 Resolvase, N terminal domain HTH_17 PF12728.7 gi|530547462|ref|YP_008429280.1| - 5.4e-12 45.7 0.2 1.2e-11 44.6 0.2 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain MerR PF00376.23 gi|530547462|ref|YP_008429280.1| - 3.4e-05 23.5 0.0 7.8e-05 22.4 0.0 1.6 1 0 0 1 1 1 1 MerR family regulatory protein MerR_1 PF13411.6 gi|530547462|ref|YP_008429280.1| - 0.00056 19.9 0.1 0.0012 18.9 0.1 1.6 1 0 0 1 1 1 1 MerR HTH family regulatory protein HTH_23 PF13384.6 gi|530547462|ref|YP_008429280.1| - 0.00059 19.5 0.1 0.0015 18.3 0.1 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_DeoR PF08220.12 gi|530547462|ref|YP_008429280.1| - 0.0064 16.2 0.1 0.016 15.0 0.1 1.6 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain AbiEi_4 PF13338.6 gi|530547462|ref|YP_008429280.1| - 0.0094 16.1 0.1 0.042 14.0 0.1 2.0 2 0 0 2 2 2 1 Transcriptional regulator, AbiEi antitoxin DUF2797 PF10977.8 gi|530547462|ref|YP_008429280.1| - 0.048 13.6 0.2 0.072 13.0 0.2 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF2797) B12-binding PF02310.19 gi|530547462|ref|YP_008429280.1| - 0.11 12.6 0.0 1.1 9.4 0.0 2.3 2 1 1 3 3 3 0 B12 binding domain Ish1 PF10281.9 gi|530547462|ref|YP_008429280.1| - 0.14 12.5 0.1 9 6.7 0.0 2.9 2 0 0 2 2 2 0 Putative stress-responsive nuclear envelope protein Serpin PF00079.20 gi|530548735|ref|YP_008429281.1| - 7.1e-119 397.4 0.0 8e-119 397.2 0.0 1.0 1 0 0 1 1 1 1 Serpin (serine protease inhibitor) FTH PF01827.27 gi|530548735|ref|YP_008429281.1| - 0.072 12.9 0.0 0.12 12.2 0.0 1.3 1 0 0 1 1 1 0 FTH domain OPT PF03169.15 gi|530548736|ref|YP_008429282.1| - 1.3e-104 351.1 50.9 1.5e-104 350.8 50.9 1.1 1 0 0 1 1 1 1 OPT oligopeptide transporter protein Mannosyl_trans2 PF04188.13 gi|530548736|ref|YP_008429282.1| - 0.11 11.8 1.7 1.2 8.3 2.3 2.2 2 0 0 2 2 2 0 Mannosyltransferase (PIG-V) Lactamase_B_2 PF12706.7 gi|530548737|ref|YP_008429283.1| - 6.2e-24 84.6 0.1 7.9e-24 84.3 0.1 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|530548737|ref|YP_008429283.1| - 1.8e-08 34.5 0.1 4e-08 33.3 0.1 1.6 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|530548737|ref|YP_008429283.1| - 0.0052 16.8 0.4 0.0069 16.4 0.4 1.5 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily PGM_PMM_I PF02878.16 gi|530548738|ref|YP_008429284.1| - 5e-41 139.6 0.1 1.5e-40 138.1 0.0 1.8 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.16 gi|530548738|ref|YP_008429284.1| - 3.2e-25 88.7 0.0 7.1e-25 87.6 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.20 gi|530548738|ref|YP_008429284.1| - 5.4e-13 48.9 0.1 1.5e-12 47.5 0.1 1.7 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain PGM_PMM_III PF02880.16 gi|530548738|ref|YP_008429284.1| - 4.1e-09 36.6 0.0 9.9e-09 35.4 0.0 1.7 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III UPF0146 PF03686.13 gi|530548739|ref|YP_008429285.1| - 3.7e-25 88.3 0.0 4.6e-25 88.0 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0146) TrkA_N PF02254.18 gi|530548739|ref|YP_008429285.1| - 0.0032 17.7 0.0 0.0049 17.1 0.0 1.2 1 0 0 1 1 1 1 TrkA-N domain ADH_zinc_N PF00107.26 gi|530548739|ref|YP_008429285.1| - 0.028 14.4 0.1 0.057 13.4 0.0 1.6 1 1 1 2 2 2 0 Zinc-binding dehydrogenase ABC_tran PF00005.27 gi|530548740|ref|YP_008429286.1| - 8e-31 107.4 0.0 1.2e-30 106.8 0.0 1.3 1 0 0 1 1 1 1 ABC transporter OB_MalK PF17912.1 gi|530548740|ref|YP_008429286.1| - 2.6e-17 63.4 0.0 8.7e-17 61.7 0.0 2.0 1 0 0 1 1 1 1 MalK OB fold domain TOBE_2 PF08402.10 gi|530548740|ref|YP_008429286.1| - 3.7e-07 30.2 0.4 1e-06 28.8 0.4 1.8 1 0 0 1 1 1 1 TOBE domain AAA_21 PF13304.6 gi|530548740|ref|YP_008429286.1| - 2.4e-06 27.6 0.0 0.019 14.8 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system CysA_C_terminal PF17850.1 gi|530548740|ref|YP_008429286.1| - 3.9e-05 24.1 0.2 0.00021 21.8 0.1 2.3 2 0 0 2 2 2 1 CysA C-terminal regulatory domain TOBE PF03459.17 gi|530548740|ref|YP_008429286.1| - 9.6e-05 22.6 0.6 0.00027 21.1 0.6 1.8 1 0 0 1 1 1 1 TOBE domain SMC_N PF02463.19 gi|530548740|ref|YP_008429286.1| - 0.0002 20.9 0.1 0.0033 16.9 0.0 2.4 2 1 0 2 2 2 1 RecF/RecN/SMC N terminal domain Rad17 PF03215.15 gi|530548740|ref|YP_008429286.1| - 0.00056 19.9 0.0 0.00085 19.3 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_16 PF13191.6 gi|530548740|ref|YP_008429286.1| - 0.0011 19.3 0.0 0.0021 18.5 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|530548740|ref|YP_008429286.1| - 0.0025 18.1 0.2 0.0066 16.7 0.2 1.8 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|530548740|ref|YP_008429286.1| - 0.0073 16.7 0.0 0.021 15.2 0.0 1.8 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Syntaxin PF00804.25 gi|530548740|ref|YP_008429286.1| - 0.028 14.1 0.6 0.049 13.3 0.6 1.4 1 1 0 1 1 1 0 Syntaxin AAA_30 PF13604.6 gi|530548740|ref|YP_008429286.1| - 0.04 13.6 0.2 0.12 12.1 0.0 1.7 2 1 0 2 2 2 0 AAA domain AAA_29 PF13555.6 gi|530548740|ref|YP_008429286.1| - 0.058 13.1 0.0 0.31 10.8 0.0 2.0 2 0 0 2 2 2 0 P-loop containing region of AAA domain AAA_25 PF13481.6 gi|530548740|ref|YP_008429286.1| - 0.061 12.9 0.1 1.1 8.8 0.0 2.2 2 0 0 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 gi|530548740|ref|YP_008429286.1| - 0.077 12.9 0.0 0.17 11.8 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase NACHT PF05729.12 gi|530548740|ref|YP_008429286.1| - 0.1 12.5 0.1 0.33 10.9 0.0 1.8 2 0 0 2 2 2 0 NACHT domain AAA_19 PF13245.6 gi|530548740|ref|YP_008429286.1| - 0.13 12.6 0.0 0.3 11.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|530548740|ref|YP_008429286.1| - 0.14 12.2 0.1 0.34 10.9 0.1 1.7 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_28 PF13521.6 gi|530548740|ref|YP_008429286.1| - 0.14 12.3 0.2 0.51 10.6 0.0 1.9 2 0 0 2 2 2 0 AAA domain Glyco_hydro_57 PF03065.15 gi|530548741|ref|YP_008429287.1| - 5.8e-110 367.5 7.2 8.7e-110 366.9 7.2 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 57 Glucodextran_C PF09985.9 gi|530548741|ref|YP_008429287.1| - 9.8e-69 231.3 0.8 2.3e-68 230.0 0.3 1.9 2 0 0 2 2 2 1 C-terminal binding-module, SLH-like, of glucodextranase BPD_transp_1 PF00528.22 gi|530548742|ref|YP_008429288.1| - 3.3e-17 62.8 19.2 1e-16 61.2 15.1 2.2 2 0 0 2 2 2 2 Binding-protein-dependent transport system inner membrane component Orf78 PF06024.12 gi|530548742|ref|YP_008429288.1| - 0.16 12.3 0.3 1 9.7 0.1 2.4 2 0 0 2 2 2 0 Orf78 (ac78) BPD_transp_1 PF00528.22 gi|530548743|ref|YP_008429289.1| - 9.2e-18 64.6 17.8 9.2e-18 64.6 17.8 2.0 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component TM_PBP2_N PF16296.5 gi|530548743|ref|YP_008429289.1| - 0.0026 17.8 1.4 0.007 16.5 1.4 1.7 1 0 0 1 1 1 1 N-terminal of TM subunit in PBP-dependent ABC transporters Flavi_M PF01004.19 gi|530548743|ref|YP_008429289.1| - 0.6 9.9 4.9 1.3 8.9 0.4 2.7 2 1 0 2 2 2 0 Flavivirus envelope glycoprotein M GTA_holin_3TM PF11351.8 gi|530548743|ref|YP_008429289.1| - 3 8.4 5.9 6.6 7.3 1.6 3.0 1 1 1 2 2 2 0 Holin of 3TMs, for gene-transfer release SBP_bac_8 PF13416.6 gi|530548744|ref|YP_008429290.1| - 1.6e-53 182.4 3.1 2.3e-53 181.8 3.1 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|530548744|ref|YP_008429290.1| - 2e-38 133.1 9.9 3e-38 132.5 9.9 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 gi|530548744|ref|YP_008429290.1| - 5.3e-09 35.9 0.2 6.7e-07 29.0 0.1 2.2 2 0 0 2 2 2 2 Bacterial extracellular solute-binding protein DUF2785 PF10978.8 gi|530548744|ref|YP_008429290.1| - 0.037 13.8 0.0 0.084 12.6 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2785) Mucin PF01456.17 gi|530548744|ref|YP_008429290.1| - 0.11 12.5 11.6 0.18 11.8 11.6 1.3 1 0 0 1 1 1 0 Mucin-like glycoprotein DUF4834 PF16118.5 gi|530548744|ref|YP_008429290.1| - 0.14 13.1 0.0 0.24 12.4 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4834) SSP160 PF06933.11 gi|530548744|ref|YP_008429290.1| - 0.2 9.8 5.1 0.27 9.4 5.1 1.1 1 0 0 1 1 1 0 Special lobe-specific silk protein SSP160 DUF3439 PF11921.8 gi|530548744|ref|YP_008429290.1| - 1.4 8.9 9.5 2.6 8.0 9.5 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3439) Alpha-amylase PF00128.24 gi|530548745|ref|YP_008429291.1| - 6e-71 239.7 0.3 8.5e-71 239.2 0.3 1.2 1 0 0 1 1 1 1 Alpha amylase, catalytic domain Alpha-amylase_N PF02903.14 gi|530548745|ref|YP_008429291.1| - 3.6e-10 40.1 4.1 5.2e-10 39.5 0.9 2.5 2 0 0 2 2 2 1 Alpha amylase, N-terminal ig-like domain AMPK1_CBM PF16561.5 gi|530548745|ref|YP_008429291.1| - 7e-06 26.2 0.0 1.6e-05 25.0 0.0 1.6 1 0 0 1 1 1 1 Glycogen recognition site of AMP-activated protein kinase CBM_48 PF02922.18 gi|530548745|ref|YP_008429291.1| - 0.0022 18.3 0.2 3.4 8.1 0.0 2.6 2 0 0 2 2 2 2 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Malt_amylase_C PF16657.5 gi|530548745|ref|YP_008429291.1| - 0.013 15.6 0.0 0.029 14.5 0.0 1.6 1 0 0 1 1 1 0 Maltogenic Amylase, C-terminal domain DUF3459 PF11941.8 gi|530548745|ref|YP_008429291.1| - 0.097 13.0 0.0 0.17 12.2 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3459) Regulator_TrmB PF11495.8 gi|530548746|ref|YP_008429292.1| - 4.3e-51 173.3 0.3 5.5e-51 173.0 0.3 1.1 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB TrmB PF01978.19 gi|530548746|ref|YP_008429292.1| - 1.6e-23 82.4 0.0 3.1e-23 81.4 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_9 PF08221.11 gi|530548746|ref|YP_008429292.1| - 0.049 13.7 0.0 0.13 12.4 0.0 1.6 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain Prot_ATP_OB_N PF17758.1 gi|530548746|ref|YP_008429292.1| - 0.073 12.7 0.0 0.14 11.8 0.0 1.4 1 0 0 1 1 1 0 Proteasomal ATPase OB N-terminal domain LexA_DNA_bind PF01726.16 gi|530548746|ref|YP_008429292.1| - 0.12 12.2 0.0 0.36 10.6 0.0 1.9 2 0 0 2 2 2 0 LexA DNA binding domain PASTA PF03793.19 gi|530548746|ref|YP_008429292.1| - 0.21 11.4 1.4 4.7 7.1 0.0 2.7 3 0 0 3 3 3 0 PASTA domain Glyco_transf_5 PF08323.11 gi|530548747|ref|YP_008429293.1| - 6e-37 127.6 0.1 8.8e-37 127.1 0.1 1.2 1 0 0 1 1 1 1 Starch synthase catalytic domain Glycos_transf_1 PF00534.20 gi|530548747|ref|YP_008429293.1| - 3.7e-25 88.4 0.0 1.4e-24 86.5 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|530548747|ref|YP_008429293.1| - 2.5e-24 86.2 0.0 5.6e-24 85.1 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|530548747|ref|YP_008429293.1| - 1.1e-15 58.0 0.1 5.1e-14 52.6 0.1 2.9 2 1 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|530548747|ref|YP_008429293.1| - 5e-08 33.6 0.0 3.5e-07 30.8 0.0 2.2 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glycogen_syn PF05693.13 gi|530548747|ref|YP_008429293.1| - 0.0014 17.3 0.0 1.3 7.5 0.0 2.6 3 0 0 3 3 3 2 Glycogen synthase Glyco_trans_4_2 PF13477.6 gi|530548747|ref|YP_008429293.1| - 0.0081 16.2 0.1 0.052 13.6 0.1 2.1 2 0 0 2 2 2 1 Glycosyl transferase 4-like AmpE PF17113.5 gi|530548747|ref|YP_008429293.1| - 0.023 14.0 0.0 0.041 13.2 0.0 1.3 1 0 0 1 1 1 0 Regulatory signalling modulator protein AmpE CRAL_TRIO_N PF03765.15 gi|530548747|ref|YP_008429293.1| - 0.098 12.9 0.2 0.21 11.8 0.2 1.6 1 0 0 1 1 1 0 CRAL/TRIO, N-terminal domain HIT PF01230.23 gi|530548748|ref|YP_008429294.1| - 2.1e-24 86.1 0.0 2.7e-24 85.7 0.0 1.1 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.8 gi|530548748|ref|YP_008429294.1| - 8.4e-14 52.0 0.0 1.4e-13 51.3 0.0 1.3 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.15 gi|530548748|ref|YP_008429294.1| - 0.012 15.5 0.6 0.028 14.3 0.6 1.7 1 1 0 1 1 1 0 Protein similar to CwfJ C-terminus 1 DUF1289 PF06945.13 gi|530548748|ref|YP_008429294.1| - 0.14 12.0 0.3 0.25 11.2 0.3 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1289) tRNA_edit PF04073.15 gi|530548749|ref|YP_008429295.1| - 3.7e-26 91.6 0.2 7.8e-26 90.6 0.0 1.6 2 0 0 2 2 2 1 Aminoacyl-tRNA editing domain MazG-like PF12643.7 gi|530548749|ref|YP_008429295.1| - 1.5e-19 70.0 4.5 3.8e-19 68.7 4.5 1.7 1 0 0 1 1 1 1 MazG-like family MazG PF03819.17 gi|530548749|ref|YP_008429295.1| - 1.5e-06 28.3 3.4 5.6e-06 26.4 3.4 2.0 1 1 0 1 1 1 1 MazG nucleotide pyrophosphohydrolase domain dUTPase_2 PF08761.11 gi|530548749|ref|YP_008429295.1| - 0.0011 19.1 0.6 0.0017 18.5 0.6 1.3 1 0 0 1 1 1 1 dUTPase PRA-PH PF01503.17 gi|530548749|ref|YP_008429295.1| - 0.021 15.3 0.1 0.047 14.1 0.1 1.6 1 0 0 1 1 1 0 Phosphoribosyl-ATP pyrophosphohydrolase Diphtheria_C PF02763.14 gi|530548749|ref|YP_008429295.1| - 0.068 12.8 0.1 0.1 12.2 0.1 1.2 1 0 0 1 1 1 0 Diphtheria toxin, C domain DUF4363 PF14276.6 gi|530548750|ref|YP_008429296.1| - 0.17 12.0 5.2 0.2 11.8 5.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4363) SdpI PF13630.6 gi|530548751|ref|YP_008429297.1| - 0.091 12.9 5.0 0.13 12.4 5.0 1.3 1 0 0 1 1 1 0 SdpI/YhfL protein family Phage_holin_3_6 PF07332.11 gi|530548752|ref|YP_008429298.1| - 0.13 12.3 3.8 0.15 12.1 3.8 1.1 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III DUF3951 PF13131.6 gi|530548752|ref|YP_008429298.1| - 0.18 12.0 3.3 7.8 6.8 0.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3951) SieB PF14163.6 gi|530548752|ref|YP_008429298.1| - 2.1 7.9 4.5 25 4.4 4.8 1.9 1 1 1 2 2 2 0 Super-infection exclusion protein B Glycophorin_A PF01102.18 gi|530548752|ref|YP_008429298.1| - 2.3 8.5 5.0 1.3 9.3 3.1 1.5 1 1 1 2 2 2 0 Glycophorin A NapE PF06796.11 gi|530548752|ref|YP_008429298.1| - 4.1 7.0 10.6 1.2 8.7 2.6 2.4 1 1 1 2 2 2 0 Periplasmic nitrate reductase protein NapE TPP_enzyme_C PF02775.21 gi|530548753|ref|YP_008429299.1| - 5.8e-32 110.6 0.3 1.3e-31 109.4 0.1 1.7 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.19 gi|530548753|ref|YP_008429299.1| - 2.3e-14 53.7 0.0 3.6e-14 53.1 0.0 1.3 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Fer4 PF00037.27 gi|530548753|ref|YP_008429299.1| - 8.4e-11 41.2 9.6 2.4e-07 30.3 2.3 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|530548753|ref|YP_008429299.1| - 6.1e-07 29.9 6.4 1.7e-06 28.5 6.4 1.8 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|530548753|ref|YP_008429299.1| - 9.3e-07 28.6 14.5 0.00024 21.0 0.6 2.9 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|530548753|ref|YP_008429299.1| - 1.7e-06 28.1 7.3 3.9e-06 26.9 7.3 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|530548753|ref|YP_008429299.1| - 0.00014 21.9 10.3 0.0034 17.5 11.3 2.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|530548753|ref|YP_008429299.1| - 0.00021 21.2 14.8 0.0011 18.9 1.3 2.7 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|530548753|ref|YP_008429299.1| - 0.00027 21.0 11.2 0.0025 17.9 10.5 2.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain PFOR_II PF17147.4 gi|530548753|ref|YP_008429299.1| - 0.00033 20.9 0.1 0.00077 19.7 0.1 1.6 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II TPP_enzyme_N PF02776.18 gi|530548753|ref|YP_008429299.1| - 0.00054 19.6 0.1 0.081 12.5 0.1 2.2 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Transketolase_C PF02780.20 gi|530548753|ref|YP_008429299.1| - 0.0075 16.2 0.1 0.027 14.4 0.0 2.0 2 0 0 2 2 2 1 Transketolase, C-terminal domain Fer4_3 PF12798.7 gi|530548753|ref|YP_008429299.1| - 0.011 16.6 3.4 0.011 16.6 3.4 2.8 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_4 PF12800.7 gi|530548753|ref|YP_008429299.1| - 0.025 15.1 11.1 0.71 10.5 2.1 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_16 PF13484.6 gi|530548753|ref|YP_008429299.1| - 0.026 15.5 7.6 0.079 13.9 1.2 2.7 2 0 0 2 2 2 0 4Fe-4S double cluster binding domain Fer4_17 PF13534.6 gi|530548753|ref|YP_008429299.1| - 2 9.0 12.3 0.82 10.3 2.2 2.6 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|530548753|ref|YP_008429299.1| - 3.1 8.4 7.7 13 6.4 1.3 2.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_8 PF13183.6 gi|530548753|ref|YP_008429299.1| - 5.3 7.6 12.4 4.9 7.7 2.6 2.5 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|530548753|ref|YP_008429299.1| - 6.8 7.6 7.5 0.9 10.4 0.5 2.5 2 0 0 2 2 2 0 4Fe-4S dicluster domain DUF4152 PF13680.6 gi|530548754|ref|YP_008429300.1| - 9.2e-117 388.3 0.2 1e-116 388.1 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF4152) Diphthami_syn_2 PF01902.17 gi|530548755|ref|YP_008429301.1| - 5.8e-85 284.2 2.3 6.4e-85 284.1 2.3 1.0 1 0 0 1 1 1 1 Diphthamide synthase QueC PF06508.13 gi|530548755|ref|YP_008429301.1| - 5.5e-05 22.8 0.0 8.7e-05 22.1 0.0 1.5 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.16 gi|530548755|ref|YP_008429301.1| - 0.0071 15.2 0.0 0.022 13.6 0.0 1.8 1 1 1 2 2 2 1 tRNA methyl transferase ThiI PF02568.14 gi|530548755|ref|YP_008429301.1| - 0.0095 15.5 0.0 0.02 14.5 0.0 1.6 2 0 0 2 2 2 1 Thiamine biosynthesis protein (ThiI) PAPS_reduct PF01507.19 gi|530548755|ref|YP_008429301.1| - 0.12 12.4 0.2 1.7 8.7 0.2 2.2 1 1 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family ABC_tran PF00005.27 gi|530548756|ref|YP_008429302.1| - 4.8e-35 121.1 0.0 7.4e-35 120.4 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|530548756|ref|YP_008429302.1| - 4.7e-08 33.2 0.9 0.0064 16.3 0.1 2.4 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system OB_MalK PF17912.1 gi|530548756|ref|YP_008429302.1| - 1e-07 32.7 0.0 3.5e-07 31.0 0.0 2.0 1 0 0 1 1 1 1 MalK OB fold domain TOBE_2 PF08402.10 gi|530548756|ref|YP_008429302.1| - 1.1e-06 28.7 0.2 2.2e-06 27.7 0.2 1.6 1 0 0 1 1 1 1 TOBE domain AAA_29 PF13555.6 gi|530548756|ref|YP_008429302.1| - 2.1e-05 24.2 0.0 4.4e-05 23.1 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|530548756|ref|YP_008429302.1| - 0.00028 20.4 0.1 0.092 12.2 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 gi|530548756|ref|YP_008429302.1| - 0.0011 18.9 0.0 0.0023 17.8 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_15 PF13175.6 gi|530548756|ref|YP_008429302.1| - 0.0052 16.5 0.0 0.0074 16.0 0.0 1.2 1 0 0 1 1 1 1 AAA ATPase domain Rad17 PF03215.15 gi|530548756|ref|YP_008429302.1| - 0.0061 16.5 0.0 0.0097 15.8 0.0 1.2 1 0 0 1 1 1 1 Rad17 P-loop domain T2SSE PF00437.20 gi|530548756|ref|YP_008429302.1| - 0.012 14.6 0.0 0.023 13.8 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_16 PF13191.6 gi|530548756|ref|YP_008429302.1| - 0.018 15.4 0.1 0.039 14.3 0.1 1.7 1 1 0 1 1 1 0 AAA ATPase domain CysA_C_terminal PF17850.1 gi|530548756|ref|YP_008429302.1| - 0.019 15.5 0.0 0.048 14.2 0.0 1.8 1 0 0 1 1 1 0 CysA C-terminal regulatory domain AAA_22 PF13401.6 gi|530548756|ref|YP_008429302.1| - 0.033 14.5 0.4 0.11 12.8 0.4 1.9 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|530548756|ref|YP_008429302.1| - 0.034 13.7 0.0 0.17 11.4 0.0 2.1 3 0 0 3 3 2 0 AAA domain AAA_23 PF13476.6 gi|530548756|ref|YP_008429302.1| - 0.036 14.6 0.5 0.036 14.6 0.5 1.9 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|530548756|ref|YP_008429302.1| - 0.058 13.1 0.0 0.14 11.9 0.0 1.6 1 1 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|530548756|ref|YP_008429302.1| - 0.063 12.5 0.0 0.11 11.7 0.0 1.4 1 1 0 1 1 1 0 NB-ARC domain G-alpha PF00503.20 gi|530548756|ref|YP_008429302.1| - 0.068 12.3 0.0 0.079 12.1 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit AAA_27 PF13514.6 gi|530548756|ref|YP_008429302.1| - 0.12 12.0 0.0 0.24 11.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|530548756|ref|YP_008429302.1| - 0.12 12.3 0.2 0.34 10.8 0.0 1.8 2 0 0 2 2 2 0 NACHT domain TniB PF05621.11 gi|530548756|ref|YP_008429302.1| - 0.13 11.7 0.3 3.1 7.2 0.1 2.4 1 1 1 2 2 2 0 Bacterial TniB protein AAA_24 PF13479.6 gi|530548756|ref|YP_008429302.1| - 0.15 11.7 0.1 0.46 10.2 0.1 1.7 2 0 0 2 2 2 0 AAA domain AAA PF00004.29 gi|530548756|ref|YP_008429302.1| - 0.16 12.4 0.0 0.67 10.4 0.0 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) MMR_HSR1 PF01926.23 gi|530548756|ref|YP_008429302.1| - 0.19 11.8 0.0 0.45 10.6 0.0 1.7 1 1 0 1 1 1 0 50S ribosome-binding GTPase BPD_transp_1 PF00528.22 gi|530548757|ref|YP_008429303.1| - 1.5e-08 34.6 16.1 1.5e-08 34.6 16.1 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component Sigma_reg_N PF13800.6 gi|530548757|ref|YP_008429303.1| - 0.76 10.1 7.0 3.1 8.2 1.1 2.5 2 1 0 2 2 2 0 Sigma factor regulator N-terminal BPD_transp_1 PF00528.22 gi|530548758|ref|YP_008429304.1| - 4.8e-13 49.3 17.4 4.8e-13 49.3 17.4 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component ESSS PF10183.9 gi|530548758|ref|YP_008429304.1| - 0.079 13.2 0.5 0.51 10.6 0.0 2.1 1 1 1 2 2 2 0 ESSS subunit of NADH:ubiquinone oxidoreductase (complex I) SBP_bac_1 PF01547.25 gi|530548759|ref|YP_008429305.1| - 1.7e-21 77.5 14.8 3.6e-20 73.2 14.8 2.2 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein Inos-1-P_synth PF01658.17 gi|530548760|ref|YP_008429306.1| - 5e-20 71.8 0.0 1e-19 70.7 0.0 1.5 1 0 0 1 1 1 1 Myo-inositol-1-phosphate synthase NAD_binding_5 PF07994.12 gi|530548760|ref|YP_008429306.1| - 3.6e-15 56.1 0.0 9.7e-15 54.8 0.0 1.7 1 1 0 1 1 1 1 Myo-inositol-1-phosphate synthase Cas_TM1802 PF09484.10 gi|530548760|ref|YP_008429306.1| - 0.14 10.9 0.1 0.18 10.5 0.1 1.1 1 0 0 1 1 1 0 CRISPR-associated protein TM1802 (cas_TM1802) DHHA1 PF02272.19 gi|530548761|ref|YP_008429307.1| - 6.5e-15 55.8 3.2 1.1e-14 55.0 3.2 1.4 1 0 0 1 1 1 1 DHHA1 domain tRNA-synt_2c PF01411.19 gi|530548761|ref|YP_008429307.1| - 1.9e-13 49.8 0.0 3e-13 49.1 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetases class II (A) tRNA_SAD PF07973.14 gi|530548761|ref|YP_008429307.1| - 7.8e-13 48.3 0.6 1.6e-12 47.3 0.6 1.6 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain Takusan PF04822.13 gi|530548761|ref|YP_008429307.1| - 0.0043 16.9 0.7 0.013 15.4 0.5 1.9 2 0 0 2 2 2 1 Takusan CorC_HlyC PF03471.17 gi|530548761|ref|YP_008429307.1| - 0.026 14.5 0.1 0.48 10.5 0.0 2.7 2 0 0 2 2 2 0 Transporter associated domain Fungal_TACC PF12709.7 gi|530548761|ref|YP_008429307.1| - 0.16 12.4 3.0 0.4 11.2 3.0 1.6 1 0 0 1 1 1 0 Fungal Transforming acidic coiled-coil (TACC) proteins ATP-synt_D PF01813.17 gi|530548762|ref|YP_008429308.1| - 3.5e-62 209.7 13.0 4e-62 209.5 13.0 1.0 1 0 0 1 1 1 1 ATP synthase subunit D HNOBA PF07701.14 gi|530548762|ref|YP_008429308.1| - 0.042 13.3 0.1 0.079 12.4 0.1 1.4 1 0 0 1 1 1 0 Heme NO binding associated CCDC92 PF14916.6 gi|530548762|ref|YP_008429308.1| - 0.045 13.5 1.1 0.071 12.9 0.1 1.8 2 0 0 2 2 2 0 Coiled-coil domain of unknown function MutS_IV PF05190.18 gi|530548762|ref|YP_008429308.1| - 0.053 13.9 5.8 1.3 9.4 0.1 3.3 2 2 1 3 3 3 0 MutS family domain IV DUF16 PF01519.16 gi|530548762|ref|YP_008429308.1| - 0.074 13.5 2.4 0.1 13.1 0.2 2.1 2 1 0 2 2 2 0 Protein of unknown function DUF16 DUF948 PF06103.11 gi|530548762|ref|YP_008429308.1| - 0.47 10.8 2.6 4.6 7.6 0.4 2.6 2 1 0 2 2 2 0 Bacterial protein of unknown function (DUF948) GAS PF13851.6 gi|530548762|ref|YP_008429308.1| - 1.1 8.6 13.5 0.14 11.5 1.4 2.4 2 1 0 2 2 2 0 Growth-arrest specific micro-tubule binding Atg14 PF10186.9 gi|530548762|ref|YP_008429308.1| - 5.3 6.0 6.5 0.72 8.9 1.1 2.0 2 0 0 2 2 2 0 Vacuolar sorting 38 and autophagy-related subunit 14 Cnn_1N PF07989.11 gi|530548762|ref|YP_008429308.1| - 5.6 7.2 12.6 21 5.3 0.7 3.3 3 0 0 3 3 3 0 Centrosomin N-terminal motif 1 ATP-synt_ab PF00006.25 gi|530548763|ref|YP_008429309.1| - 7.8e-69 231.6 0.0 1e-68 231.2 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_N PF02874.23 gi|530548763|ref|YP_008429309.1| - 1.9e-13 50.7 3.4 1.9e-13 50.7 3.4 1.9 2 0 0 2 2 2 1 ATP synthase alpha/beta family, beta-barrel domain HAS-barrel PF09378.10 gi|530548763|ref|YP_008429309.1| - 3.6e-05 23.8 3.5 0.00012 22.2 1.7 2.4 2 0 0 2 2 2 1 HAS barrel domain ATP-synt_ab PF00006.25 gi|530548764|ref|YP_008429310.1| - 6.5e-87 290.6 0.0 2.2e-80 269.3 0.0 2.2 2 0 0 2 2 2 2 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_Xtn PF16886.5 gi|530548764|ref|YP_008429310.1| - 6.4e-50 168.1 0.3 1.5e-49 166.8 0.3 1.7 1 0 0 1 1 1 1 ATPsynthase alpha/beta subunit N-term extension LAGLIDADG_3 PF14528.6 gi|530548764|ref|YP_008429310.1| - 3.4e-18 65.8 1.9 1.7e-12 47.5 0.4 2.5 2 0 0 2 2 2 2 LAGLIDADG-like domain Intein_splicing PF14890.6 gi|530548764|ref|YP_008429310.1| - 9.4e-18 64.5 0.3 2.1e-17 63.3 0.3 1.6 1 0 0 1 1 1 1 Intein splicing domain ATP-synt_ab_N PF02874.23 gi|530548764|ref|YP_008429310.1| - 6e-14 52.3 4.8 2.5e-13 50.3 4.8 2.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain Hint PF01079.20 gi|530548764|ref|YP_008429310.1| - 0.0018 17.9 0.0 0.0069 15.9 0.0 2.0 2 0 0 2 2 2 1 Hint module Sigma70_r3 PF04539.16 gi|530548764|ref|YP_008429310.1| - 0.28 11.3 1.2 0.72 10.0 0.1 2.2 2 0 0 2 2 2 0 Sigma-70 region 3 ATP-synt_F PF01990.17 gi|530548765|ref|YP_008429311.1| - 4.5e-20 71.8 0.4 6.9e-20 71.2 0.4 1.4 1 1 0 1 1 1 1 ATP synthase (F/14-kDa) subunit vATP-synt_AC39 PF01992.16 gi|530548766|ref|YP_008429312.1| - 2e-66 224.8 14.1 2.3e-66 224.6 14.1 1.0 1 0 0 1 1 1 1 ATP synthase (C/AC39) subunit vATP-synt_E PF01991.18 gi|530548767|ref|YP_008429313.1| - 2.4e-39 134.8 22.2 2.7e-39 134.7 22.2 1.0 1 0 0 1 1 1 1 ATP synthase (E/31 kDa) subunit Thioredoxin_5 PF13743.6 gi|530548767|ref|YP_008429313.1| - 0.0081 15.9 0.4 0.31 10.7 0.0 2.7 2 1 1 3 3 3 1 Thioredoxin PHA_gran_rgn PF09650.10 gi|530548767|ref|YP_008429313.1| - 0.019 15.2 2.7 0.12 12.7 3.0 2.2 2 0 0 2 2 2 0 Putative polyhydroxyalkanoic acid system protein (PHA_gran_rgn) ATP-synt_B PF00430.18 gi|530548767|ref|YP_008429313.1| - 0.022 14.8 17.7 0.022 14.8 17.7 2.8 2 1 1 3 3 3 0 ATP synthase B/B' CF(0) DUF1884 PF08967.10 gi|530548767|ref|YP_008429313.1| - 0.034 14.4 2.3 0.034 14.4 2.3 2.6 2 1 0 2 2 2 0 Domain of unknown function (DUF1884) HrpE PF06188.12 gi|530548767|ref|YP_008429313.1| - 0.085 12.7 6.4 0.12 12.3 6.4 1.3 1 0 0 1 1 1 0 HrpE/YscL/FliH and V-type ATPase subunit E DUF3552 PF12072.8 gi|530548767|ref|YP_008429313.1| - 0.13 11.7 33.3 0.68 9.3 7.5 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF3552) DUF1780 PF08682.10 gi|530548767|ref|YP_008429313.1| - 0.18 11.4 2.7 0.31 10.7 2.7 1.3 1 0 0 1 1 1 0 Putative endonuclease, protein of unknown function (DUF1780) DUF4799 PF16056.5 gi|530548767|ref|YP_008429313.1| - 0.59 9.2 1.9 0.85 8.7 1.9 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4799) DUF5401 PF17380.2 gi|530548767|ref|YP_008429313.1| - 0.73 7.8 21.0 0.9 7.5 21.0 1.0 1 0 0 1 1 1 0 Family of unknown function (DUF5401) AAA_13 PF13166.6 gi|530548767|ref|YP_008429313.1| - 0.81 8.3 12.3 1.1 7.8 12.3 1.1 1 0 0 1 1 1 0 AAA domain Prismane PF03063.20 gi|530548767|ref|YP_008429313.1| - 1.1 7.8 6.0 1.7 7.2 5.9 1.4 1 1 0 1 1 1 0 Prismane/CO dehydrogenase family NolV PF06635.12 gi|530548767|ref|YP_008429313.1| - 1.3 8.4 9.1 6.4 6.1 8.5 1.9 1 1 1 2 2 2 0 Nodulation protein NolV PdaC PF13739.6 gi|530548767|ref|YP_008429313.1| - 1.8 9.6 7.5 36 5.4 4.1 2.6 1 1 1 2 2 2 0 Deacetylase PdaC YtxH PF12732.7 gi|530548767|ref|YP_008429313.1| - 2.4 8.7 13.3 4.1 8.0 5.7 3.0 2 1 0 2 2 2 0 YtxH-like protein ATP-synt_C PF00137.21 gi|530548768|ref|YP_008429314.1| - 1.7e-29 101.9 28.3 2.6e-16 59.7 11.2 2.3 2 0 0 2 2 2 2 ATP synthase subunit C DUF759 PF05537.11 gi|530548768|ref|YP_008429314.1| - 0.12 11.3 0.1 0.16 10.9 0.1 1.2 1 0 0 1 1 1 0 Borrelia burgdorferi protein of unknown function (DUF759) V_ATPase_I PF01496.19 gi|530548769|ref|YP_008429315.1| - 3.1e-36 124.7 13.4 1e-21 76.7 0.0 3.8 3 1 0 4 4 4 3 V-type ATPase 116kDa subunit family Fez1 PF06818.15 gi|530548769|ref|YP_008429315.1| - 0.0022 18.5 0.3 0.0048 17.4 0.3 1.5 1 1 0 1 1 1 1 Fez1 Prefoldin PF02996.17 gi|530548769|ref|YP_008429315.1| - 0.0025 17.7 4.4 0.52 10.2 0.7 2.7 2 0 0 2 2 2 2 Prefoldin subunit V_ATPase_I_N PF18670.1 gi|530548769|ref|YP_008429315.1| - 0.0028 18.0 0.1 0.0088 16.4 0.1 1.8 1 0 0 1 1 1 1 V-type ATPase subunit I, N-terminal domain DUF4140 PF13600.6 gi|530548769|ref|YP_008429315.1| - 0.008 16.6 1.1 2.5 8.6 0.2 2.6 2 0 0 2 2 2 1 N-terminal domain of unknown function (DUF4140) DUF5082 PF16888.5 gi|530548769|ref|YP_008429315.1| - 0.014 15.7 1.2 0.67 10.2 0.1 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF5082) FlaC_arch PF05377.11 gi|530548769|ref|YP_008429315.1| - 0.026 14.9 5.0 0.19 12.1 2.1 2.6 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) CLZ PF16526.5 gi|530548769|ref|YP_008429315.1| - 0.028 14.8 0.8 0.89 10.0 0.1 2.5 2 0 0 2 2 2 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels Prefoldin_2 PF01920.20 gi|530548769|ref|YP_008429315.1| - 0.032 14.2 8.8 0.71 9.8 0.9 2.7 2 1 0 2 2 2 0 Prefoldin subunit APG6_N PF17675.1 gi|530548769|ref|YP_008429315.1| - 0.038 14.5 7.8 0.65 10.5 1.3 2.3 2 0 0 2 2 2 0 Apg6 coiled-coil region DivIC PF04977.15 gi|530548769|ref|YP_008429315.1| - 0.045 13.5 4.2 7.3 6.4 0.1 3.4 3 0 0 3 3 3 0 Septum formation initiator Tropomyosin_1 PF12718.7 gi|530548769|ref|YP_008429315.1| - 0.054 13.7 7.0 0.1 12.8 0.6 2.3 2 0 0 2 2 2 0 Tropomyosin like Val_tRNA-synt_C PF10458.9 gi|530548769|ref|YP_008429315.1| - 0.056 13.7 8.1 0.14 12.4 1.5 3.9 3 1 0 3 3 3 0 Valyl tRNA synthetase tRNA binding arm CorA PF01544.18 gi|530548769|ref|YP_008429315.1| - 0.085 12.2 2.4 0.22 10.8 0.1 2.4 1 1 1 2 2 2 0 CorA-like Mg2+ transporter protein DUF1192 PF06698.11 gi|530548769|ref|YP_008429315.1| - 0.085 12.9 8.8 2.2 8.4 0.5 2.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1192) DUF4618 PF15397.6 gi|530548769|ref|YP_008429315.1| - 0.087 12.2 5.2 0.33 10.3 5.1 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4618) ZapB PF06005.12 gi|530548769|ref|YP_008429315.1| - 0.1 13.1 9.1 0.75 10.3 3.7 2.5 2 0 0 2 2 2 0 Cell division protein ZapB DUF1759 PF03564.15 gi|530548769|ref|YP_008429315.1| - 0.11 12.4 0.3 0.25 11.3 0.3 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1759) DUF4094 PF13334.6 gi|530548769|ref|YP_008429315.1| - 0.29 11.6 0.0 0.29 11.6 0.0 2.9 3 0 0 3 3 3 0 Domain of unknown function (DUF4094) DUF4200 PF13863.6 gi|530548769|ref|YP_008429315.1| - 0.33 11.4 9.7 3.5 8.1 0.7 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4200) BST2 PF16716.5 gi|530548769|ref|YP_008429315.1| - 0.35 11.5 1.9 9.8 6.8 0.1 2.5 2 0 0 2 2 2 0 Bone marrow stromal antigen 2 DUF641 PF04859.12 gi|530548769|ref|YP_008429315.1| - 0.37 11.1 2.9 19 5.6 0.1 2.4 2 0 0 2 2 2 0 Plant protein of unknown function (DUF641) zf-C4H2 PF10146.9 gi|530548769|ref|YP_008429315.1| - 0.9 9.8 7.0 1.4 9.2 0.3 2.2 2 0 0 2 2 2 0 Zinc finger-containing protein PHM7_cyt PF14703.6 gi|530548769|ref|YP_008429315.1| - 1.1 9.5 5.8 0.55 10.4 1.5 2.2 1 1 1 2 2 2 0 Cytosolic domain of 10TM putative phosphate transporter DUF16 PF01519.16 gi|530548769|ref|YP_008429315.1| - 1.1 9.8 3.3 1.1 9.8 0.3 2.3 2 0 0 2 2 2 0 Protein of unknown function DUF16 SlyX PF04102.12 gi|530548769|ref|YP_008429315.1| - 1.2 9.8 5.2 4.4 8.0 0.4 2.5 2 0 0 2 2 2 0 SlyX TRAF_BIRC3_bd PF16673.5 gi|530548769|ref|YP_008429315.1| - 1.3 8.9 5.1 1.9 8.4 0.9 2.6 2 0 0 2 2 2 0 TNF receptor-associated factor BIRC3 binding domain TMF_DNA_bd PF12329.8 gi|530548769|ref|YP_008429315.1| - 1.4 9.0 7.1 3.7 7.6 0.7 2.7 2 0 0 2 2 2 0 TATA element modulatory factor 1 DNA binding Paralemmin PF03285.15 gi|530548769|ref|YP_008429315.1| - 1.6 8.2 4.0 14 5.2 0.3 2.1 2 0 0 2 2 2 0 Paralemmin ABC_tran_CTD PF16326.5 gi|530548769|ref|YP_008429315.1| - 2.7 8.3 16.7 4.4 7.6 3.8 3.7 3 0 0 3 3 3 0 ABC transporter C-terminal domain DUF4795 PF16043.5 gi|530548769|ref|YP_008429315.1| - 2.8 7.5 5.8 11 5.6 5.8 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4795) CEP63 PF17045.5 gi|530548769|ref|YP_008429315.1| - 5.5 6.8 7.6 11 5.9 1.8 2.2 2 0 0 2 2 2 0 Centrosomal protein of 63 kDa IFT20 PF14931.6 gi|530548769|ref|YP_008429315.1| - 7.1 6.8 7.7 3.8 7.7 0.7 2.6 2 0 0 2 2 2 0 Intraflagellar transport complex B, subunit 20 DUF5595 PF18077.1 gi|530548769|ref|YP_008429315.1| - 9.2 6.4 9.5 19 5.4 0.8 3.2 3 0 0 3 3 3 0 Domain of unknown function (DUF5595) V-ATPase_G_2 PF16999.5 gi|530548770|ref|YP_008429316.1| - 2.2e-07 31.2 24.3 2.6e-07 31.0 24.3 1.1 1 0 0 1 1 1 1 Vacuolar (H+)-ATPase G subunit ATP-synt_B PF00430.18 gi|530548770|ref|YP_008429316.1| - 8.7e-06 25.9 27.4 1.6e-05 25.0 20.5 2.0 1 1 1 2 2 2 2 ATP synthase B/B' CF(0) V-ATPase_G PF03179.15 gi|530548770|ref|YP_008429316.1| - 0.0038 17.7 26.1 0.0059 17.1 26.1 1.3 1 1 0 1 1 1 1 Vacuolar (H+)-ATPase G subunit DivIVA PF05103.13 gi|530548770|ref|YP_008429316.1| - 0.006 16.7 22.7 0.81 9.8 22.9 2.2 1 1 0 1 1 1 1 DivIVA protein DUF883 PF05957.13 gi|530548770|ref|YP_008429316.1| - 0.0077 16.8 11.6 0.038 14.6 3.5 2.1 1 1 1 2 2 2 2 Bacterial protein of unknown function (DUF883) DUF3552 PF12072.8 gi|530548770|ref|YP_008429316.1| - 0.04 13.3 25.7 0.049 13.1 19.7 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF3552) GARP PF16731.5 gi|530548770|ref|YP_008429316.1| - 0.19 11.4 13.8 0.23 11.1 13.8 1.1 1 0 0 1 1 1 0 Glutamic acid/alanine-rich protein of Trypanosoma HrpE PF06188.12 gi|530548770|ref|YP_008429316.1| - 0.67 9.8 9.4 0.4 10.5 6.4 1.9 1 1 1 2 2 2 0 HrpE/YscL/FliH and V-type ATPase subunit E Borrelia_P83 PF05262.11 gi|530548770|ref|YP_008429316.1| - 1.2 7.5 20.3 1.4 7.4 20.3 1.0 1 0 0 1 1 1 0 Borrelia P83/100 protein MAJIN PF15077.6 gi|530548770|ref|YP_008429316.1| - 1.3 8.8 5.6 1.5 8.6 5.6 1.0 1 0 0 1 1 1 0 Membrane-anchored junction protein NARP1 PF12569.8 gi|530548770|ref|YP_008429316.1| - 1.3 7.8 13.1 1.5 7.7 13.1 1.0 1 0 0 1 1 1 0 NMDA receptor-regulated protein 1 OmpH PF03938.14 gi|530548770|ref|YP_008429316.1| - 1.7 9.0 20.4 2 8.8 20.4 1.0 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) DUF262 PF03235.14 gi|530548770|ref|YP_008429316.1| - 2.1 8.5 10.5 2.3 8.3 10.5 1.0 1 0 0 1 1 1 0 Protein of unknown function DUF262 Phage_min_cap2 PF06152.11 gi|530548770|ref|YP_008429316.1| - 3 6.7 12.3 3.5 6.4 12.3 1.1 1 0 0 1 1 1 0 Phage minor capsid protein 2 DUF2252 PF10009.9 gi|530548770|ref|YP_008429316.1| - 3.3 6.7 6.3 3.8 6.5 6.3 1.0 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2252) vATP-synt_E PF01991.18 gi|530548770|ref|YP_008429316.1| - 3.7 6.9 34.8 1.2 8.5 9.2 2.2 1 1 1 2 2 2 0 ATP synthase (E/31 kDa) subunit YtxH PF12732.7 gi|530548770|ref|YP_008429316.1| - 4.6 7.9 17.4 2.4 8.8 9.7 2.3 1 1 1 2 2 2 0 YtxH-like protein Mitofilin PF09731.9 gi|530548770|ref|YP_008429316.1| - 5.5 5.7 21.9 6.5 5.5 21.9 1.0 1 0 0 1 1 1 0 Mitochondrial inner membrane protein hDGE_amylase PF14701.6 gi|530548770|ref|YP_008429316.1| - 6.8 5.7 8.2 7.1 5.6 8.2 1.0 1 0 0 1 1 1 0 Glycogen debranching enzyme, glucanotransferase domain TrkA_N PF02254.18 gi|530548771|ref|YP_008429317.1| - 4.3e-31 107.6 1.1 6.4e-31 107.0 0.6 1.6 2 0 0 2 2 2 1 TrkA-N domain TrkA_C PF02080.21 gi|530548771|ref|YP_008429317.1| - 1.3e-11 44.2 0.2 1.9e-10 40.4 0.1 2.5 3 0 0 3 3 2 1 TrkA-C domain ApbA PF02558.16 gi|530548771|ref|YP_008429317.1| - 3.2e-07 30.1 0.1 5.9e-07 29.3 0.1 1.5 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA UDPG_MGDP_dh_N PF03721.14 gi|530548771|ref|YP_008429317.1| - 8.2e-07 28.8 0.3 1.1e-05 25.1 0.1 2.2 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NmrA PF05368.13 gi|530548771|ref|YP_008429317.1| - 9.9e-06 25.3 0.2 4.1e-05 23.3 0.1 2.0 2 0 0 2 2 2 1 NmrA-like family NAD_binding_10 PF13460.6 gi|530548771|ref|YP_008429317.1| - 6.5e-05 22.9 0.1 0.00011 22.2 0.1 1.4 1 0 0 1 1 1 1 NAD(P)H-binding Sacchrp_dh_NADP PF03435.18 gi|530548771|ref|YP_008429317.1| - 7e-05 23.1 0.2 0.00011 22.4 0.2 1.5 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain AlaDh_PNT_C PF01262.21 gi|530548771|ref|YP_008429317.1| - 0.00019 20.8 0.3 0.00027 20.3 0.4 1.4 1 1 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain 3HCDH_N PF02737.18 gi|530548771|ref|YP_008429317.1| - 0.00035 20.5 0.1 0.00072 19.5 0.1 1.6 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Shikimate_DH PF01488.20 gi|530548771|ref|YP_008429317.1| - 0.00038 20.5 0.4 0.00092 19.3 0.3 1.8 1 1 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase XdhC_C PF13478.6 gi|530548771|ref|YP_008429317.1| - 0.001 19.6 0.0 0.0017 18.9 0.0 1.4 1 0 0 1 1 1 1 XdhC Rossmann domain Pyr_redox PF00070.27 gi|530548771|ref|YP_008429317.1| - 0.0033 17.9 0.3 0.013 16.0 0.1 2.1 2 0 0 2 2 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_Gly3P_dh_N PF01210.23 gi|530548771|ref|YP_008429317.1| - 0.004 17.1 0.1 0.018 15.0 0.0 2.0 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_7 PF13241.6 gi|530548771|ref|YP_008429317.1| - 0.0047 17.3 0.5 0.014 15.8 0.5 2.0 1 1 0 1 1 1 1 Putative NAD(P)-binding F420_oxidored PF03807.17 gi|530548771|ref|YP_008429317.1| - 0.0085 16.7 0.1 0.022 15.3 0.1 1.8 1 1 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent DapB_N PF01113.20 gi|530548771|ref|YP_008429317.1| - 0.015 15.4 0.9 1.4 9.0 0.3 2.3 1 1 1 2 2 2 0 Dihydrodipicolinate reductase, N-terminus Epimerase PF01370.21 gi|530548771|ref|YP_008429317.1| - 0.017 14.6 0.1 0.025 14.1 0.1 1.2 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family PglD_N PF17836.1 gi|530548771|ref|YP_008429317.1| - 0.017 15.8 0.5 0.047 14.3 0.2 1.9 2 0 0 2 2 1 0 PglD N-terminal domain 2-Hacid_dh_C PF02826.19 gi|530548771|ref|YP_008429317.1| - 0.018 14.4 0.1 0.03 13.7 0.1 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain adh_short_C2 PF13561.6 gi|530548771|ref|YP_008429317.1| - 0.018 14.6 0.2 0.048 13.2 0.2 1.6 2 0 0 2 2 2 0 Enoyl-(Acyl carrier protein) reductase Pyr_redox_2 PF07992.14 gi|530548771|ref|YP_008429317.1| - 0.023 14.0 0.1 0.027 13.7 0.1 1.3 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_2 PF03446.15 gi|530548771|ref|YP_008429317.1| - 0.038 14.1 0.1 0.079 13.1 0.1 1.7 2 1 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase UPF0146 PF03686.13 gi|530548771|ref|YP_008429317.1| - 0.04 13.8 0.1 0.095 12.6 0.1 1.6 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0146) Thi4 PF01946.17 gi|530548771|ref|YP_008429317.1| - 0.048 12.9 0.2 0.091 12.0 0.2 1.5 1 1 0 1 1 1 0 Thi4 family FAD_binding_3 PF01494.19 gi|530548771|ref|YP_008429317.1| - 0.061 12.6 0.0 0.096 11.9 0.0 1.3 1 0 0 1 1 1 0 FAD binding domain Gp_dh_N PF00044.24 gi|530548771|ref|YP_008429317.1| - 0.088 13.2 0.1 0.16 12.3 0.1 1.5 1 0 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain B12-binding PF02310.19 gi|530548771|ref|YP_008429317.1| - 0.094 12.8 0.1 0.23 11.5 0.1 1.8 1 1 0 1 1 1 0 B12 binding domain AdoHcyase_NAD PF00670.21 gi|530548771|ref|YP_008429317.1| - 0.13 12.4 0.1 0.23 11.5 0.1 1.5 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain adh_short PF00106.25 gi|530548771|ref|YP_008429317.1| - 0.14 11.6 0.2 0.21 11.0 0.2 1.3 1 0 0 1 1 1 0 short chain dehydrogenase Rossmann-like PF10727.9 gi|530548771|ref|YP_008429317.1| - 0.16 11.8 0.0 0.29 11.0 0.0 1.5 1 0 0 1 1 1 0 Rossmann-like domain NAD_binding_8 PF13450.6 gi|530548771|ref|YP_008429317.1| - 0.17 12.2 0.0 0.37 11.1 0.0 1.5 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain Trp_halogenase PF04820.14 gi|530548771|ref|YP_008429317.1| - 0.19 10.5 0.0 0.27 10.1 0.0 1.1 1 0 0 1 1 1 0 Tryptophan halogenase SecD_SecF PF02355.16 gi|530548772|ref|YP_008429318.1| - 5.5e-18 65.0 6.5 1.2e-17 63.9 6.5 1.5 1 0 0 1 1 1 1 Protein export membrane protein Sec_GG PF07549.14 gi|530548772|ref|YP_008429318.1| - 2.6e-06 26.7 0.1 6.4e-06 25.5 0.1 1.7 1 0 0 1 1 1 1 SecD/SecF GG Motif MMPL PF03176.15 gi|530548772|ref|YP_008429318.1| - 5.8e-06 25.5 6.4 5.8e-06 25.5 6.4 1.5 2 0 0 2 2 2 1 MMPL family ACR_tran PF00873.19 gi|530548772|ref|YP_008429318.1| - 0.0014 16.4 7.5 0.0022 15.8 7.5 1.2 1 0 0 1 1 1 1 AcrB/AcrD/AcrF family Patched PF02460.18 gi|530548772|ref|YP_008429318.1| - 0.0026 15.9 6.4 0.0035 15.5 6.4 1.1 1 0 0 1 1 1 1 Patched family DctP PF03480.13 gi|530548772|ref|YP_008429318.1| - 0.081 12.3 0.0 0.13 11.6 0.0 1.2 1 0 0 1 1 1 0 Bacterial extracellular solute-binding protein, family 7 SecD_SecF PF02355.16 gi|530548773|ref|YP_008429319.1| - 5.4e-30 104.2 10.0 8.9e-30 103.5 10.0 1.3 1 0 0 1 1 1 1 Protein export membrane protein Patched PF02460.18 gi|530548773|ref|YP_008429319.1| - 2.7e-06 25.8 5.9 3.6e-06 25.4 5.9 1.2 1 0 0 1 1 1 1 Patched family BAT PF15915.5 gi|530548773|ref|YP_008429319.1| - 0.0011 18.8 0.1 0.0021 17.9 0.1 1.5 1 0 0 1 1 1 1 GAF and HTH_10 associated domain Sec_GG PF07549.14 gi|530548773|ref|YP_008429319.1| - 0.066 12.7 0.7 0.38 10.3 0.1 2.4 2 0 0 2 2 2 0 SecD/SecF GG Motif MMPL PF03176.15 gi|530548773|ref|YP_008429319.1| - 0.066 12.1 14.5 0.0038 16.2 9.5 1.5 2 0 0 2 2 2 0 MMPL family AdoMet_dc PF02675.15 gi|530547463|ref|YP_008429320.1| - 1.6e-38 131.2 0.0 1.9e-38 130.9 0.0 1.1 1 0 0 1 1 1 1 S-adenosylmethionine decarboxylase Spc7 PF08317.11 gi|530547464|ref|YP_008429321.1| - 8.9e-08 31.4 55.0 5.5e-06 25.5 34.5 2.4 1 1 1 2 2 2 2 Spc7 kinetochore protein HTH_38 PF13936.6 gi|530547464|ref|YP_008429321.1| - 1.6e-05 24.5 3.8 8.7e-05 22.2 0.6 2.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_40 PF14493.6 gi|530547464|ref|YP_008429321.1| - 4.3e-05 23.9 3.9 4.3e-05 23.9 3.9 4.0 1 1 1 2 2 1 1 Helix-turn-helix domain CENP-F_leu_zip PF10473.9 gi|530547464|ref|YP_008429321.1| - 8.4e-05 22.6 66.3 0.0067 16.5 30.4 3.7 1 1 1 2 2 2 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 HTH_23 PF13384.6 gi|530547464|ref|YP_008429321.1| - 0.00017 21.3 0.1 0.00051 19.8 0.1 1.8 1 0 0 1 1 1 1 Homeodomain-like domain HTH_20 PF12840.7 gi|530547464|ref|YP_008429321.1| - 0.00026 21.0 0.3 0.0011 19.0 0.0 2.2 2 0 0 2 2 1 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|530547464|ref|YP_008429321.1| - 0.00028 20.5 0.1 0.0012 18.5 0.1 2.1 1 0 0 1 1 1 1 Sigma-70, region 4 bZIP_2 PF07716.15 gi|530547464|ref|YP_008429321.1| - 0.0015 18.6 7.0 0.0015 18.6 7.0 6.4 4 1 2 6 6 3 1 Basic region leucine zipper HTH_29 PF13551.6 gi|530547464|ref|YP_008429321.1| - 0.0016 18.4 0.0 0.0039 17.2 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn helix GerE PF00196.19 gi|530547464|ref|YP_008429321.1| - 0.002 17.7 0.7 0.0076 15.8 0.1 2.2 2 0 0 2 2 2 1 Bacterial regulatory proteins, luxR family HTH_24 PF13412.6 gi|530547464|ref|YP_008429321.1| - 0.002 17.6 0.7 0.0053 16.3 0.1 2.1 2 0 0 2 2 1 1 Winged helix-turn-helix DNA-binding TACC_C PF05010.14 gi|530547464|ref|YP_008429321.1| - 0.0025 17.6 20.9 0.0025 17.6 20.9 2.5 1 1 1 2 2 2 1 Transforming acidic coiled-coil-containing protein (TACC), C-terminal HTH_11 PF08279.12 gi|530547464|ref|YP_008429321.1| - 0.0047 16.9 0.1 0.0047 16.9 0.1 3.2 3 0 0 3 3 2 1 HTH domain HTH_5 PF01022.20 gi|530547464|ref|YP_008429321.1| - 0.0089 15.9 0.4 0.35 10.8 0.0 2.6 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|530547464|ref|YP_008429321.1| - 0.0099 15.8 0.1 0.023 14.6 0.1 1.6 1 0 0 1 1 1 1 MarR family HTH_28 PF13518.6 gi|530547464|ref|YP_008429321.1| - 0.011 15.8 0.7 0.037 14.2 0.1 2.2 3 0 0 3 3 1 0 Helix-turn-helix domain TPR_MLP1_2 PF07926.12 gi|530547464|ref|YP_008429321.1| - 0.013 15.6 54.1 0.51 10.4 20.1 3.9 1 1 2 3 3 3 0 TPR/MLP1/MLP2-like protein Laminin_II PF06009.12 gi|530547464|ref|YP_008429321.1| - 0.013 15.5 9.6 0.013 15.5 9.6 3.6 1 1 3 4 4 4 0 Laminin Domain II GAS PF13851.6 gi|530547464|ref|YP_008429321.1| - 0.016 14.6 64.6 0.082 12.3 14.2 3.0 1 1 2 3 3 3 0 Growth-arrest specific micro-tubule binding HTH_31 PF13560.6 gi|530547464|ref|YP_008429321.1| - 0.018 15.4 0.5 0.054 13.8 0.5 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain DUF1664 PF07889.12 gi|530547464|ref|YP_008429321.1| - 0.022 14.8 5.0 0.022 14.8 5.0 3.1 1 1 2 3 3 3 0 Protein of unknown function (DUF1664) ATG16 PF08614.11 gi|530547464|ref|YP_008429321.1| - 0.027 14.7 40.5 0.8 9.9 37.9 2.5 1 1 1 2 2 2 0 Autophagy protein 16 (ATG16) HTH_Tnp_Tc3_1 PF11427.8 gi|530547464|ref|YP_008429321.1| - 0.056 13.3 0.1 0.27 11.1 0.0 2.2 2 0 0 2 2 2 0 Tc3 transposase HTH_DeoR PF08220.12 gi|530547464|ref|YP_008429321.1| - 0.08 12.7 0.5 0.35 10.6 0.1 2.3 2 0 0 2 2 1 0 DeoR-like helix-turn-helix domain DUF3584 PF12128.8 gi|530547464|ref|YP_008429321.1| - 0.1 10.1 34.1 0.14 9.7 34.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) Seryl_tRNA_N PF02403.22 gi|530547464|ref|YP_008429321.1| - 0.16 12.2 57.3 0.48 10.7 11.7 3.4 1 1 2 3 3 3 0 Seryl-tRNA synthetase N-terminal domain FlaC_arch PF05377.11 gi|530547464|ref|YP_008429321.1| - 0.19 12.2 50.9 1.8 9.1 1.7 7.0 4 2 3 7 7 6 0 Flagella accessory protein C (FlaC) NPV_P10 PF05531.12 gi|530547464|ref|YP_008429321.1| - 0.21 12.0 12.0 3.4 8.2 0.8 3.7 2 1 1 3 3 3 0 Nucleopolyhedrovirus P10 protein FapA PF03961.13 gi|530547464|ref|YP_008429321.1| - 0.24 10.0 48.8 0.3 9.7 23.4 2.3 1 1 1 2 2 2 0 Flagellar Assembly Protein A DUF4407 PF14362.6 gi|530547464|ref|YP_008429321.1| - 0.24 10.7 25.8 3.4 6.9 11.8 2.5 1 1 1 2 2 2 0 Domain of unknown function (DUF4407) APG6_N PF17675.1 gi|530547464|ref|YP_008429321.1| - 0.24 11.9 68.8 0.037 14.6 31.1 3.5 1 1 2 3 3 3 0 Apg6 coiled-coil region UPF0242 PF06785.11 gi|530547464|ref|YP_008429321.1| - 0.27 11.3 58.4 0.11 12.6 26.4 3.0 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0242) N-terminus DUF3450 PF11932.8 gi|530547464|ref|YP_008429321.1| - 0.29 10.4 39.7 0.6 9.4 11.3 3.3 1 1 2 3 3 3 0 Protein of unknown function (DUF3450) WXG100 PF06013.12 gi|530547464|ref|YP_008429321.1| - 0.3 11.3 10.3 1.4 9.2 0.4 4.1 3 1 0 3 3 2 0 Proteins of 100 residues with WXG Bacillus_HBL PF05791.11 gi|530547464|ref|YP_008429321.1| - 0.41 10.5 20.8 1.3 8.8 5.7 2.7 1 1 1 2 2 2 0 Bacillus haemolytic enterotoxin (HBL) Retrotrans_gag PF03732.17 gi|530547464|ref|YP_008429321.1| - 0.64 10.3 15.4 2.5 8.4 0.5 3.3 1 1 3 4 4 4 0 Retrotransposon gag protein SHE3 PF17078.5 gi|530547464|ref|YP_008429321.1| - 1.2 8.8 38.5 4.3 7.0 25.5 2.5 1 1 1 2 2 2 0 SWI5-dependent HO expression protein 3 Fzo_mitofusin PF04799.13 gi|530547464|ref|YP_008429321.1| - 1.3 8.6 34.5 0.34 10.5 4.5 3.9 1 1 4 5 5 5 0 fzo-like conserved region THOC7 PF05615.13 gi|530547464|ref|YP_008429321.1| - 1.3 9.3 45.9 0.15 12.3 20.0 3.1 1 1 1 2 2 2 0 Tho complex subunit 7 HemX PF04375.14 gi|530547464|ref|YP_008429321.1| - 1.5 8.0 24.8 1.3 8.2 5.5 2.9 1 1 2 3 3 3 0 HemX, putative uroporphyrinogen-III C-methyltransferase KASH_CCD PF14662.6 gi|530547464|ref|YP_008429321.1| - 1.7 8.4 54.1 0.68 9.7 24.7 2.6 1 1 1 2 2 2 0 Coiled-coil region of CCDC155 or KASH CALCOCO1 PF07888.11 gi|530547464|ref|YP_008429321.1| - 1.8 7.4 52.2 7.1 5.4 34.2 2.2 1 1 1 2 2 2 0 Calcium binding and coiled-coil domain (CALCOCO1) like DUF812 PF05667.11 gi|530547464|ref|YP_008429321.1| - 1.9 7.3 54.2 4.6 6.0 54.3 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF812) Peptidase_M2 PF01401.18 gi|530547464|ref|YP_008429321.1| - 2.9 6.4 13.4 4 5.9 13.4 1.3 1 0 0 1 1 1 0 Angiotensin-converting enzyme Rootletin PF15035.6 gi|530547464|ref|YP_008429321.1| - 3.2 7.7 41.6 1.4 8.9 25.2 3.0 1 1 1 2 2 2 0 Ciliary rootlet component, centrosome cohesion Fez1 PF06818.15 gi|530547464|ref|YP_008429321.1| - 3.6 8.0 51.8 0.094 13.2 36.7 2.8 1 1 2 3 3 3 0 Fez1 AAA_13 PF13166.6 gi|530547464|ref|YP_008429321.1| - 3.7 6.1 42.1 2.9 6.4 26.2 2.1 1 1 1 2 2 2 0 AAA domain DivIC PF04977.15 gi|530547464|ref|YP_008429321.1| - 5.9 6.7 55.5 1.8 8.4 8.2 5.7 3 3 3 6 6 4 0 Septum formation initiator TolA_bind_tri PF16331.5 gi|530547464|ref|YP_008429321.1| - 7.3 6.8 30.4 1 9.5 2.3 4.8 1 1 4 5 5 5 0 TolA binding protein trimerisation Peptidase_S46 PF10459.9 gi|530547464|ref|YP_008429321.1| - 7.3 5.1 29.0 0.063 11.9 15.2 2.1 1 1 1 2 2 2 0 Peptidase S46 DUF4201 PF13870.6 gi|530547464|ref|YP_008429321.1| - 7.8 6.2 56.9 2.9 7.6 19.9 3.9 1 1 2 3 3 3 0 Domain of unknown function (DUF4201) YabA PF06156.13 gi|530547464|ref|YP_008429321.1| - 8.7 7.0 46.2 3.1 8.5 7.1 4.4 1 1 4 5 5 4 0 Initiation control protein YabA ATPase PF06745.13 gi|530548774|ref|YP_008429322.1| - 6.7e-93 310.3 0.1 7.6e-93 310.1 0.1 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|530548774|ref|YP_008429322.1| - 1.5e-08 34.5 0.0 3.2e-08 33.4 0.0 1.5 1 1 0 1 1 1 1 AAA domain GvpD PF07088.11 gi|530548774|ref|YP_008429322.1| - 5e-08 32.0 0.0 7.3e-08 31.5 0.0 1.1 1 0 0 1 1 1 1 GvpD gas vesicle protein Rad51 PF08423.11 gi|530548774|ref|YP_008429322.1| - 0.00047 19.5 0.3 0.004 16.4 0.1 2.1 2 0 0 2 2 2 1 Rad51 T2SSE PF00437.20 gi|530548774|ref|YP_008429322.1| - 0.0071 15.4 0.0 0.013 14.6 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein DnaB_C PF03796.15 gi|530548774|ref|YP_008429322.1| - 0.022 14.1 0.0 0.028 13.8 0.0 1.2 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain AAA_24 PF13479.6 gi|530548774|ref|YP_008429322.1| - 0.023 14.4 0.5 0.16 11.6 0.7 2.1 2 1 0 2 2 2 0 AAA domain AAA_19 PF13245.6 gi|530548774|ref|YP_008429322.1| - 0.025 14.9 0.6 0.051 13.9 0.6 1.8 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|530548774|ref|YP_008429322.1| - 0.077 13.4 0.1 0.16 12.3 0.0 1.6 1 1 0 1 1 1 0 AAA ATPase domain AAA_7 PF12775.7 gi|530548774|ref|YP_008429322.1| - 0.15 11.5 0.0 0.3 10.6 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region PPV_E1_C PF00519.17 gi|530548774|ref|YP_008429322.1| - 0.2 10.5 0.0 0.37 9.6 0.0 1.3 1 0 0 1 1 1 0 Papillomavirus helicase UPF0113 PF03657.13 gi|530548775|ref|YP_008429323.1| - 5.1e-17 61.9 0.1 8.3e-17 61.2 0.1 1.3 1 0 0 1 1 1 1 UPF0113 PUA domain UPF0113_N PF17833.1 gi|530548775|ref|YP_008429323.1| - 1.2e-06 29.0 0.2 2.3e-06 28.1 0.2 1.5 1 0 0 1 1 1 1 UPF0113 Pre-PUA domain CxxCxxCC PF03692.15 gi|530548776|ref|YP_008429324.1| - 5.3e-14 52.7 0.3 7.6e-14 52.2 0.3 1.2 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain SapC PF07277.11 gi|530548776|ref|YP_008429324.1| - 0.034 13.7 0.0 0.047 13.3 0.0 1.2 1 0 0 1 1 1 0 SapC Peptidase_M1 PF01433.20 gi|530548777|ref|YP_008429325.1| - 4.3e-09 36.3 0.3 4.3e-08 33.0 0.3 2.2 1 1 0 1 1 1 1 Peptidase family M1 domain FUSC_2 PF13515.6 gi|530548778|ref|YP_008429326.1| - 0.4 10.8 7.9 0.49 10.5 7.9 1.2 1 0 0 1 1 1 0 Fusaric acid resistance protein-like CPP1-like PF11833.8 gi|530548779|ref|YP_008429327.1| - 0.5 10.0 4.8 0.68 9.6 4.8 1.2 1 0 0 1 1 1 0 Protein CHAPERONE-LIKE PROTEIN OF POR1-like CLU PF13236.6 gi|530548780|ref|YP_008429328.1| - 0.15 11.8 0.0 0.2 11.4 0.0 1.1 1 0 0 1 1 1 0 Clustered mitochondria Radical_SAM PF04055.21 gi|530548781|ref|YP_008429329.1| - 8.3e-31 107.6 0.3 2.7e-29 102.7 0.0 3.3 2 1 0 2 2 2 1 Radical SAM superfamily Radical_SAM_C PF16199.5 gi|530548781|ref|YP_008429329.1| - 4.3e-29 100.4 0.6 1.1e-28 99.0 0.6 1.7 1 0 0 1 1 1 1 Radical_SAM C-terminal domain Acetyltransf_1 PF00583.25 gi|530548781|ref|YP_008429329.1| - 1.9e-09 37.8 0.3 5.5e-09 36.3 0.3 1.9 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|530548781|ref|YP_008429329.1| - 2.3e-05 24.3 0.1 8e-05 22.6 0.1 1.9 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|530548781|ref|YP_008429329.1| - 0.0075 16.7 0.1 0.016 15.7 0.1 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain TctA PF01970.16 gi|530548782|ref|YP_008429330.1| - 6.6e-31 107.4 39.7 8.7e-31 107.0 39.7 1.1 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter TctA family Spore_YhaL PF14147.6 gi|530548782|ref|YP_008429330.1| - 0.035 13.8 1.4 0.11 12.2 1.4 1.9 1 0 0 1 1 1 0 Sporulation protein YhaL COX14 PF14880.6 gi|530548782|ref|YP_008429330.1| - 0.074 12.9 0.4 0.25 11.2 0.4 2.0 1 0 0 1 1 1 0 Cytochrome oxidase c assembly TatC PF00902.18 gi|530548783|ref|YP_008429331.1| - 0.052 13.4 0.4 0.06 13.2 0.4 1.1 1 0 0 1 1 1 0 Sec-independent protein translocase protein (TatC) NIF3 PF01784.18 gi|530548784|ref|YP_008429332.1| - 5.8e-60 203.0 0.0 7e-60 202.7 0.0 1.0 1 0 0 1 1 1 1 NIF3 (NGG1p interacting factor 3) AP_endonuc_2 PF01261.24 gi|530548784|ref|YP_008429332.1| - 0.14 11.6 0.0 0.21 11.0 0.0 1.3 1 0 0 1 1 1 0 Xylose isomerase-like TIM barrel DUF4932 PF16286.5 gi|530548786|ref|YP_008429334.1| - 1.1e-57 195.8 5.8 1.2e-57 195.6 4.7 1.5 2 0 0 2 2 2 1 Domain of unknown function (DUF4932) TGS PF02824.21 gi|530548786|ref|YP_008429334.1| - 0.075 13.1 0.0 0.69 10.0 0.0 2.3 1 1 1 2 2 2 0 TGS domain DUF5069 PF16798.5 gi|530548786|ref|YP_008429334.1| - 0.11 12.7 0.4 0.34 11.1 0.0 2.0 3 0 0 3 3 3 0 Domain of unknown function (DUF5069) DUF771 PF05595.11 gi|530548788|ref|YP_008429336.1| - 0.018 15.0 0.1 0.03 14.3 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF771) tRNA-synt_2c PF01411.19 gi|530548789|ref|YP_008429337.1| - 5.8e-152 507.0 0.0 7.6e-152 506.6 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (A) DHHA1 PF02272.19 gi|530548789|ref|YP_008429337.1| - 1.2e-18 67.8 9.5 1.2e-18 67.8 9.5 2.0 2 0 0 2 2 2 1 DHHA1 domain tRNA_SAD PF07973.14 gi|530548789|ref|YP_008429337.1| - 2.8e-15 56.2 0.2 9.3e-15 54.5 0.2 1.9 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain DKNYY PF13644.6 gi|530548789|ref|YP_008429337.1| - 0.043 14.6 0.4 0.086 13.6 0.4 1.5 1 0 0 1 1 1 0 DKNYY family YabA PF06156.13 gi|530548790|ref|YP_008429338.1| - 4.3e-07 30.5 4.7 5.5e-07 30.2 4.7 1.2 1 0 0 1 1 1 1 Initiation control protein YabA TTKRSYEDQ PF10212.9 gi|530548790|ref|YP_008429338.1| - 0.00058 19.0 0.5 0.00059 19.0 0.5 1.0 1 0 0 1 1 1 1 Predicted coiled-coil domain-containing protein CtIP_N PF10482.9 gi|530548790|ref|YP_008429338.1| - 0.0013 18.8 2.8 0.0015 18.6 2.8 1.2 1 0 0 1 1 1 1 Tumour-suppressor protein CtIP N-terminal domain TolA_bind_tri PF16331.5 gi|530548790|ref|YP_008429338.1| - 0.0015 18.6 7.3 0.0018 18.3 7.3 1.1 1 0 0 1 1 1 1 TolA binding protein trimerisation ADIP PF11559.8 gi|530548790|ref|YP_008429338.1| - 0.0017 18.5 2.3 0.002 18.2 2.3 1.1 1 0 0 1 1 1 1 Afadin- and alpha -actinin-Binding Ax_dynein_light PF10211.9 gi|530548790|ref|YP_008429338.1| - 0.002 18.1 7.6 0.0024 17.8 7.6 1.1 1 0 0 1 1 1 1 Axonemal dynein light chain ATG16 PF08614.11 gi|530548790|ref|YP_008429338.1| - 0.0039 17.4 2.6 0.005 17.1 2.6 1.1 1 0 0 1 1 1 1 Autophagy protein 16 (ATG16) Med9 PF07544.13 gi|530548790|ref|YP_008429338.1| - 0.0045 17.0 1.8 0.0045 17.0 1.8 2.1 1 1 1 2 2 2 1 RNA polymerase II transcription mediator complex subunit 9 Mod_r PF07200.13 gi|530548790|ref|YP_008429338.1| - 0.0079 16.3 5.5 0.01 15.9 5.5 1.1 1 0 0 1 1 1 1 Modifier of rudimentary (Mod(r)) protein Tropomyosin_1 PF12718.7 gi|530548790|ref|YP_008429338.1| - 0.0095 16.1 5.1 0.013 15.7 5.1 1.2 1 0 0 1 1 1 1 Tropomyosin like PI3K_P85_iSH2 PF16454.5 gi|530548790|ref|YP_008429338.1| - 0.01 15.4 6.0 0.013 15.2 6.0 1.1 1 0 0 1 1 1 0 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain AAA_28 PF13521.6 gi|530548790|ref|YP_008429338.1| - 0.015 15.5 0.1 0.018 15.3 0.1 1.1 1 0 0 1 1 1 0 AAA domain bZIP_2 PF07716.15 gi|530548790|ref|YP_008429338.1| - 0.015 15.3 7.1 0.68 10.1 0.3 2.4 1 1 0 2 2 2 0 Basic region leucine zipper DUF16 PF01519.16 gi|530548790|ref|YP_008429338.1| - 0.016 15.7 4.0 0.022 15.2 4.0 1.2 1 0 0 1 1 1 0 Protein of unknown function DUF16 UPF0242 PF06785.11 gi|530548790|ref|YP_008429338.1| - 0.017 15.3 4.7 0.018 15.1 4.7 1.1 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus Fez1 PF06818.15 gi|530548790|ref|YP_008429338.1| - 0.017 15.5 3.8 0.018 15.5 3.8 1.0 1 0 0 1 1 1 0 Fez1 KLRAQ PF10205.9 gi|530548790|ref|YP_008429338.1| - 0.023 14.9 3.3 0.027 14.7 3.3 1.2 1 0 0 1 1 1 0 Predicted coiled-coil domain-containing protein DUF2968 PF11180.8 gi|530548790|ref|YP_008429338.1| - 0.023 14.3 0.2 0.027 14.1 0.2 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2968) FapA PF03961.13 gi|530548790|ref|YP_008429338.1| - 0.024 13.3 6.6 0.029 13.0 6.6 1.0 1 0 0 1 1 1 0 Flagellar Assembly Protein A UPF0175 PF03683.13 gi|530548790|ref|YP_008429338.1| - 0.026 14.2 0.3 0.038 13.7 0.3 1.5 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0175) Lzipper-MIP1 PF14389.6 gi|530548790|ref|YP_008429338.1| - 0.027 14.8 3.6 0.027 14.8 3.6 2.2 2 0 0 2 2 2 0 Leucine-zipper of ternary complex factor MIP1 DUF1447 PF07288.11 gi|530548790|ref|YP_008429338.1| - 0.033 14.2 0.5 0.033 14.2 0.5 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF1447) Csm1_N PF18504.1 gi|530548790|ref|YP_008429338.1| - 0.035 14.4 6.2 0.39 11.1 1.3 2.1 2 0 0 2 2 2 0 Csm1 N-terminal domain FAM76 PF16046.5 gi|530548790|ref|YP_008429338.1| - 0.038 13.4 5.7 0.046 13.1 5.7 1.0 1 0 0 1 1 1 0 FAM76 protein TMF_DNA_bd PF12329.8 gi|530548790|ref|YP_008429338.1| - 0.038 14.0 10.7 0.055 13.5 10.7 1.3 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding Swi5 PF07061.11 gi|530548790|ref|YP_008429338.1| - 0.047 13.8 6.1 0.15 12.2 1.3 2.1 1 1 1 2 2 2 0 Swi5 CCDC92 PF14916.6 gi|530548790|ref|YP_008429338.1| - 0.05 13.4 7.0 0.79 9.5 1.2 2.7 1 1 1 2 2 2 0 Coiled-coil domain of unknown function Fmp27_WPPW PF10359.9 gi|530548790|ref|YP_008429338.1| - 0.071 11.9 3.8 0.076 11.9 3.8 1.0 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain DivIC PF04977.15 gi|530548790|ref|YP_008429338.1| - 0.08 12.7 5.2 0.12 12.1 4.4 1.7 1 1 0 1 1 1 0 Septum formation initiator LRRFIP PF09738.9 gi|530548790|ref|YP_008429338.1| - 0.088 12.3 8.2 0.094 12.2 8.2 1.0 1 0 0 1 1 1 0 LRRFIP family FlxA PF14282.6 gi|530548790|ref|YP_008429338.1| - 0.11 12.5 5.9 0.16 12.0 5.9 1.3 1 0 0 1 1 1 0 FlxA-like protein ZapB PF06005.12 gi|530548790|ref|YP_008429338.1| - 0.12 12.9 11.6 1.2 9.6 11.9 2.0 1 1 1 2 2 2 0 Cell division protein ZapB DUF745 PF05335.13 gi|530548790|ref|YP_008429338.1| - 0.12 12.1 0.9 0.15 11.8 0.9 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF745) Baculo_E66 PF04850.12 gi|530548790|ref|YP_008429338.1| - 0.12 11.1 0.1 0.14 10.9 0.1 1.0 1 0 0 1 1 1 0 Baculovirus E66 occlusion-derived virus envelope protein PEP-utilisers_N PF05524.13 gi|530548790|ref|YP_008429338.1| - 0.13 12.5 1.2 0.19 11.9 1.2 1.5 1 1 0 1 1 1 0 PEP-utilising enzyme, N-terminal DUF4988 PF16378.5 gi|530548790|ref|YP_008429338.1| - 0.14 11.8 1.5 0.18 11.5 1.5 1.1 1 0 0 1 1 1 0 Domain of unknown function GvpK PF05121.12 gi|530548790|ref|YP_008429338.1| - 0.16 12.1 4.5 0.083 12.9 1.3 1.9 1 1 1 2 2 2 0 Gas vesicle protein K bZIP_1 PF00170.21 gi|530548790|ref|YP_008429338.1| - 0.16 12.1 9.7 2.3 8.4 3.1 2.2 1 1 1 2 2 2 0 bZIP transcription factor DUF4709 PF15821.5 gi|530548790|ref|YP_008429338.1| - 0.18 12.1 6.4 0.25 11.6 6.4 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4709) DUF465 PF04325.13 gi|530548790|ref|YP_008429338.1| - 0.21 11.7 10.7 0.41 10.7 1.8 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF465) JAKMIP_CC3 PF16034.5 gi|530548790|ref|YP_008429338.1| - 0.22 11.5 7.0 0.27 11.1 7.0 1.1 1 0 0 1 1 1 0 JAKMIP CC3 domain E2F_CC-MB PF16421.5 gi|530548790|ref|YP_008429338.1| - 0.22 11.9 6.4 2.4 8.6 6.5 1.9 1 1 1 2 2 2 0 E2F transcription factor CC-MB domain FlaC_arch PF05377.11 gi|530548790|ref|YP_008429338.1| - 0.23 11.9 8.8 1.4 9.4 5.2 2.3 1 1 1 2 2 2 0 Flagella accessory protein C (FlaC) DUF5082 PF16888.5 gi|530548790|ref|YP_008429338.1| - 0.32 11.3 7.5 0.16 12.2 1.4 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF5082) APG6_N PF17675.1 gi|530548790|ref|YP_008429338.1| - 0.37 11.3 10.2 1.2 9.7 10.3 1.7 1 1 0 1 1 1 0 Apg6 coiled-coil region SOGA PF11365.8 gi|530548790|ref|YP_008429338.1| - 0.37 11.9 11.1 0.58 11.3 5.1 2.3 1 1 1 2 2 2 0 Protein SOGA Nup54 PF13874.6 gi|530548790|ref|YP_008429338.1| - 0.39 10.8 4.7 0.49 10.5 4.7 1.1 1 0 0 1 1 1 0 Nucleoporin complex subunit 54 BLOC1_2 PF10046.9 gi|530548790|ref|YP_008429338.1| - 0.4 11.0 8.9 2.6 8.4 1.1 2.1 1 1 1 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Val_tRNA-synt_C PF10458.9 gi|530548790|ref|YP_008429338.1| - 0.41 11.0 5.1 1.7 9.0 5.1 2.0 1 1 0 1 1 1 0 Valyl tRNA synthetase tRNA binding arm DivIVA PF05103.13 gi|530548790|ref|YP_008429338.1| - 0.47 10.5 8.2 1.6 8.8 1.3 2.0 1 1 1 2 2 2 0 DivIVA protein KIP1 PF07765.12 gi|530548790|ref|YP_008429338.1| - 0.52 10.5 4.9 0.79 9.9 4.9 1.5 1 1 0 1 1 1 0 KIP1-like protein SlyX PF04102.12 gi|530548790|ref|YP_008429338.1| - 0.58 10.8 7.2 2.1 9.0 7.2 1.9 1 1 0 1 1 1 0 SlyX Spc24 PF08286.11 gi|530548790|ref|YP_008429338.1| - 0.96 9.7 7.7 8.5 6.7 7.7 2.0 1 1 0 1 1 1 0 Spc24 subunit of Ndc80 Med4 PF10018.9 gi|530548790|ref|YP_008429338.1| - 5.7 6.6 9.1 9.1 5.9 2.2 2.0 1 1 1 2 2 2 0 Vitamin-D-receptor interacting Mediator subunit 4 CN_hydrolase PF00795.22 gi|530548791|ref|YP_008429339.1| - 1.3e-53 182.1 0.0 1.5e-53 181.8 0.0 1.0 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase Ribosomal_L41 PF05162.13 gi|530548792|ref|YP_008429340.1| - 0.0041 17.2 17.0 0.0041 17.2 17.0 2.6 1 1 1 2 2 2 1 Ribosomal protein L41 Metallophos PF00149.28 gi|530548793|ref|YP_008429341.1| - 3.1e-10 40.9 0.0 4.8e-10 40.3 0.0 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|530548793|ref|YP_008429341.1| - 6.3e-07 29.7 0.0 8.5e-07 29.3 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos_3 PF14582.6 gi|530548793|ref|YP_008429341.1| - 0.029 13.7 0.1 0.071 12.4 0.0 1.5 1 1 0 1 1 1 0 Metallophosphoesterase, calcineurin superfamily Lar_N PF09861.9 gi|530548793|ref|YP_008429341.1| - 0.1 11.7 0.0 0.16 11.1 0.0 1.3 1 0 0 1 1 1 0 Lactate racemase N-terminal domain TrmB PF01978.19 gi|530548794|ref|YP_008429342.1| - 7.7e-11 41.7 0.6 7.7e-11 41.7 0.6 2.0 2 1 1 3 3 3 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.12 gi|530548794|ref|YP_008429342.1| - 2.3e-05 24.3 0.5 2.3e-05 24.3 0.5 1.8 2 0 0 2 2 2 1 HTH domain FaeA PF04703.12 gi|530548794|ref|YP_008429342.1| - 4.5e-05 23.7 1.3 6.3e-05 23.3 0.1 1.7 2 0 0 2 2 2 1 FaeA-like protein HTH_24 PF13412.6 gi|530548794|ref|YP_008429342.1| - 6.8e-05 22.3 0.3 0.00015 21.2 0.3 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_Mga PF08280.11 gi|530548794|ref|YP_008429342.1| - 0.00031 20.7 0.3 0.00079 19.4 0.3 1.7 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain HTH_5 PF01022.20 gi|530548794|ref|YP_008429342.1| - 0.00079 19.2 1.7 0.0017 18.2 0.2 2.0 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|530548794|ref|YP_008429342.1| - 0.0015 18.6 0.1 0.0036 17.3 0.2 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain PaaX PF07848.12 gi|530548794|ref|YP_008429342.1| - 0.004 17.3 0.1 0.015 15.5 0.0 1.8 2 0 0 2 2 2 1 PaaX-like protein HTH_IclR PF09339.10 gi|530548794|ref|YP_008429342.1| - 0.0041 16.9 0.0 0.0093 15.7 0.0 1.6 1 1 0 1 1 1 1 IclR helix-turn-helix domain GerE PF00196.19 gi|530548794|ref|YP_008429342.1| - 0.0094 15.5 0.4 0.021 14.4 0.0 1.7 2 0 0 2 2 2 1 Bacterial regulatory proteins, luxR family HTH_23 PF13384.6 gi|530548794|ref|YP_008429342.1| - 0.013 15.2 0.1 0.022 14.5 0.1 1.4 1 0 0 1 1 1 0 Homeodomain-like domain Fe_dep_repress PF01325.19 gi|530548794|ref|YP_008429342.1| - 0.015 15.5 0.3 0.046 13.9 0.1 1.9 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain HTH_DeoR PF08220.12 gi|530548794|ref|YP_008429342.1| - 0.015 15.1 0.1 0.033 13.9 0.1 1.5 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain Rrf2 PF02082.20 gi|530548794|ref|YP_008429342.1| - 0.036 14.4 0.1 0.075 13.4 0.0 1.6 2 0 0 2 2 2 0 Transcriptional regulator HTH_40 PF14493.6 gi|530548794|ref|YP_008429342.1| - 0.037 14.5 0.3 0.06 13.8 0.3 1.5 1 1 0 1 1 1 0 Helix-turn-helix domain LexA_DNA_bind PF01726.16 gi|530548794|ref|YP_008429342.1| - 0.047 13.5 0.1 0.088 12.6 0.1 1.5 1 0 0 1 1 1 0 LexA DNA binding domain MarR PF01047.22 gi|530548794|ref|YP_008429342.1| - 0.052 13.5 0.2 0.13 12.2 0.1 1.8 1 1 0 1 1 1 0 MarR family Mga PF05043.13 gi|530548794|ref|YP_008429342.1| - 0.055 14.0 0.5 0.21 12.2 0.1 1.9 2 0 0 2 2 2 0 Mga helix-turn-helix domain GntR PF00392.21 gi|530548794|ref|YP_008429342.1| - 0.056 13.1 0.5 0.29 10.8 0.3 2.2 1 1 1 2 2 2 0 Bacterial regulatory proteins, gntR family Penicillinase_R PF03965.16 gi|530548794|ref|YP_008429342.1| - 0.061 13.7 0.4 0.087 13.2 0.4 1.2 1 0 0 1 1 1 0 Penicillinase repressor HTH_36 PF13730.6 gi|530548794|ref|YP_008429342.1| - 1.5 8.9 7.4 2.6 8.0 0.4 3.3 3 1 0 3 3 3 0 Helix-turn-helix domain Peptidase_M28 PF04389.17 gi|530548795|ref|YP_008429343.1| - 2.3e-17 63.3 0.0 4.2e-17 62.5 0.0 1.4 1 0 0 1 1 1 1 Peptidase family M28 DUF4910 PF16254.5 gi|530548795|ref|YP_008429343.1| - 1.4e-09 37.2 0.0 1.5e-08 33.8 0.0 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF4910) PA PF02225.22 gi|530548795|ref|YP_008429343.1| - 2.4e-06 27.5 0.0 4.9e-06 26.5 0.0 1.5 1 0 0 1 1 1 1 PA domain HTH_10 PF04967.12 gi|530548796|ref|YP_008429344.1| - 0.0076 16.0 1.2 2.1 8.2 0.1 3.0 2 1 1 3 3 3 2 HTH DNA binding domain ATPase PF06745.13 gi|530548797|ref|YP_008429345.1| - 2.2e-29 102.5 4.1 2.4e-29 102.3 4.1 1.0 1 0 0 1 1 1 1 KaiC ATPase PF06745.13 gi|530548798|ref|YP_008429346.1| - 3.5e-17 62.5 1.1 4.1e-17 62.3 1.1 1.0 1 0 0 1 1 1 1 KaiC RecA PF00154.21 gi|530548798|ref|YP_008429346.1| - 2.5e-06 27.2 0.1 2.6e-06 27.1 0.1 1.0 1 0 0 1 1 1 1 recA bacterial DNA recombination protein DnaB_C PF03796.15 gi|530548798|ref|YP_008429346.1| - 3.1e-05 23.4 0.0 3.3e-05 23.3 0.0 1.0 1 0 0 1 1 1 1 DnaB-like helicase C terminal domain AAA_25 PF13481.6 gi|530548798|ref|YP_008429346.1| - 4.3e-05 23.2 0.0 4.3e-05 23.2 0.0 1.0 1 0 0 1 1 1 1 AAA domain Rad51 PF08423.11 gi|530548798|ref|YP_008429346.1| - 7.2e-05 22.2 0.1 7.2e-05 22.2 0.1 1.0 1 0 0 1 1 1 1 Rad51 DUF2075 PF09848.9 gi|530548798|ref|YP_008429346.1| - 0.00026 20.4 0.2 0.00027 20.3 0.2 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) cobW PF02492.19 gi|530548798|ref|YP_008429346.1| - 0.0019 17.8 0.1 0.0023 17.6 0.1 1.1 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain ATPase_2 PF01637.18 gi|530548798|ref|YP_008429346.1| - 0.0035 17.3 0.1 0.0035 17.3 0.1 1.1 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_22 PF13401.6 gi|530548798|ref|YP_008429346.1| - 0.0053 17.0 0.1 0.0061 16.8 0.1 1.1 1 0 0 1 1 1 1 AAA domain ABC_tran PF00005.27 gi|530548798|ref|YP_008429346.1| - 0.008 16.7 0.5 0.0098 16.4 0.5 1.1 1 0 0 1 1 1 1 ABC transporter AAA_30 PF13604.6 gi|530548798|ref|YP_008429346.1| - 0.013 15.2 0.1 0.014 15.1 0.1 1.1 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|530548798|ref|YP_008429346.1| - 0.013 16.0 0.2 0.017 15.7 0.2 1.2 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|530548798|ref|YP_008429346.1| - 0.014 15.8 0.2 0.014 15.8 0.2 1.1 1 0 0 1 1 1 0 AAA ATPase domain NTPase_1 PF03266.15 gi|530548798|ref|YP_008429346.1| - 0.014 15.3 0.2 0.017 15.1 0.2 1.1 1 0 0 1 1 1 0 NTPase AAA_19 PF13245.6 gi|530548798|ref|YP_008429346.1| - 0.016 15.6 0.4 0.018 15.4 0.4 1.1 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|530548798|ref|YP_008429346.1| - 0.016 15.0 0.0 0.022 14.5 0.0 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain Zot PF05707.12 gi|530548798|ref|YP_008429346.1| - 0.024 14.3 0.0 0.029 14.0 0.0 1.2 1 0 0 1 1 1 0 Zonular occludens toxin (Zot) NACHT PF05729.12 gi|530548798|ref|YP_008429346.1| - 0.024 14.5 0.0 0.029 14.3 0.0 1.2 1 0 0 1 1 1 0 NACHT domain Herpes_Helicase PF02689.14 gi|530548798|ref|YP_008429346.1| - 0.042 11.8 0.0 0.042 11.8 0.0 1.0 1 0 0 1 1 1 0 Helicase GvpD PF07088.11 gi|530548798|ref|YP_008429346.1| - 0.043 12.4 0.2 0.045 12.4 0.2 1.2 1 0 0 1 1 1 0 GvpD gas vesicle protein T2SSE PF00437.20 gi|530548798|ref|YP_008429346.1| - 0.045 12.8 0.1 0.045 12.8 0.1 1.1 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_33 PF13671.6 gi|530548798|ref|YP_008429346.1| - 0.048 13.8 0.1 0.05 13.8 0.1 1.1 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|530548798|ref|YP_008429346.1| - 0.057 13.1 0.1 0.071 12.8 0.1 1.1 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|530548798|ref|YP_008429346.1| - 0.068 13.4 0.1 0.081 13.2 0.1 1.1 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.6 gi|530548798|ref|YP_008429346.1| - 0.098 12.7 0.1 0.12 12.4 0.1 1.2 1 0 0 1 1 1 0 AAA domain AAA PF00004.29 gi|530548798|ref|YP_008429346.1| - 0.14 12.6 0.1 0.18 12.3 0.1 1.2 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) PAXNEB PF05625.11 gi|530548798|ref|YP_008429346.1| - 0.16 11.1 0.3 0.16 11.1 0.3 1.1 1 0 0 1 1 1 0 PAXNEB protein Viral_helicase1 PF01443.18 gi|530548798|ref|YP_008429346.1| - 0.16 11.7 0.0 0.19 11.4 0.0 1.1 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase DAP3 PF10236.9 gi|530548798|ref|YP_008429346.1| - 0.2 10.8 0.0 0.23 10.6 0.0 1.1 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 IstB_IS21 PF01695.17 gi|530548798|ref|YP_008429346.1| - 0.2 11.4 0.1 0.2 11.4 0.1 1.1 1 0 0 1 1 1 0 IstB-like ATP binding protein TIP49 PF06068.13 gi|530548798|ref|YP_008429346.1| - 0.2 10.8 0.1 0.22 10.7 0.1 1.1 1 0 0 1 1 1 0 TIP49 P-loop domain RNA12 PF10443.9 gi|530548798|ref|YP_008429346.1| - 0.2 10.3 0.1 0.22 10.2 0.1 1.1 1 0 0 1 1 1 0 RNA12 protein PhoH PF02562.16 gi|530548798|ref|YP_008429346.1| - 0.25 10.8 0.1 0.3 10.5 0.1 1.1 1 0 0 1 1 1 0 PhoH-like protein Herpes_ori_bp PF02399.15 gi|530548798|ref|YP_008429346.1| - 0.26 9.3 0.0 0.29 9.1 0.0 1.0 1 0 0 1 1 1 0 Origin of replication binding protein Glycos_transf_2 PF00535.26 gi|530548799|ref|YP_008429347.1| - 2e-38 131.9 0.0 4.1e-38 130.8 0.0 1.5 2 0 0 2 2 2 1 Glycosyl transferase family 2 GtrA PF04138.14 gi|530548799|ref|YP_008429347.1| - 2.2e-25 89.2 7.1 3.3e-25 88.6 7.1 1.3 1 0 0 1 1 1 1 GtrA-like protein Glyco_tranf_2_3 PF13641.6 gi|530548799|ref|YP_008429347.1| - 4.4e-13 49.6 0.0 5.4e-13 49.4 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|530548799|ref|YP_008429347.1| - 6.9e-05 22.5 0.0 9.7e-05 22.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.6 gi|530548799|ref|YP_008429347.1| - 0.018 14.5 0.0 0.033 13.7 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase family 21 HGTP_anticodon PF03129.20 gi|530548799|ref|YP_008429347.1| - 0.15 12.2 0.3 1.9 8.7 0.3 2.3 1 1 0 1 1 1 0 Anticodon binding domain Glyco_transf_7N PF13733.6 gi|530548799|ref|YP_008429347.1| - 0.22 11.2 0.1 0.47 10.1 0.0 1.6 2 0 0 2 2 2 0 N-terminal region of glycosyl transferase group 7 RNA_Me_trans PF04252.13 gi|530548800|ref|YP_008429348.1| - 1.1e-43 149.1 0.1 1.4e-43 148.9 0.1 1.1 1 0 0 1 1 1 1 Predicted SAM-dependent RNA methyltransferase DUF2103 PF09876.9 gi|530548802|ref|YP_008429350.1| - 3.4e-19 68.6 0.9 4e-19 68.4 0.9 1.0 1 0 0 1 1 1 1 Predicted metal-binding protein (DUF2103) ABC2_membrane_2 PF12679.7 gi|530548803|ref|YP_008429351.1| - 1.4e-29 103.3 7.0 3.2e-29 102.1 7.0 1.6 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|530548803|ref|YP_008429351.1| - 0.00015 21.0 17.3 0.00015 21.0 17.3 2.7 3 0 0 3 3 3 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|530548803|ref|YP_008429351.1| - 0.00043 19.8 11.9 0.00043 19.8 11.9 2.4 2 1 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_4 PF12730.7 gi|530548803|ref|YP_008429351.1| - 0.0017 18.3 13.3 0.0017 18.3 13.3 2.4 2 1 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|530548803|ref|YP_008429351.1| - 3.5 7.1 24.1 0.023 14.3 11.6 2.8 3 0 0 3 3 3 0 ABC-2 family transporter protein MNSV_P7B PF06692.11 gi|530548803|ref|YP_008429351.1| - 5.6 7.0 5.6 2 8.5 0.7 2.6 2 0 0 2 2 2 0 Melon necrotic spot virus P7B protein ABC2_membrane_5 PF13346.6 gi|530548807|ref|YP_008429355.1| - 9.6e-06 25.3 12.6 9.6e-06 25.3 12.6 1.8 2 1 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|530548807|ref|YP_008429355.1| - 3.8e-05 23.0 15.3 3.8e-05 23.0 15.3 1.8 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|530548807|ref|YP_008429355.1| - 0.18 11.0 18.6 0.069 12.4 16.1 1.5 1 1 0 1 1 1 0 ABC-2 family transporter protein DUF373 PF04123.13 gi|530548807|ref|YP_008429355.1| - 1.1 8.6 6.8 0.61 9.5 4.9 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF373) ABC2_membrane_4 PF12730.7 gi|530548807|ref|YP_008429355.1| - 2 8.3 20.5 2.2 8.2 16.7 2.7 1 1 1 2 2 2 0 ABC-2 family transporter protein ABC_tran PF00005.27 gi|530548809|ref|YP_008429357.1| - 2.5e-20 73.4 0.0 3.3e-20 73.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|530548809|ref|YP_008429357.1| - 1.3e-06 28.5 0.2 0.029 14.2 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|530548809|ref|YP_008429357.1| - 1e-05 25.1 0.3 0.0076 15.7 0.1 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|530548809|ref|YP_008429357.1| - 1.1e-05 26.1 0.5 1.6e-05 25.5 0.5 1.3 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|530548809|ref|YP_008429357.1| - 0.00077 19.2 0.1 0.0014 18.4 0.1 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_27 PF13514.6 gi|530548809|ref|YP_008429357.1| - 0.0016 18.1 0.1 0.0022 17.6 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|530548809|ref|YP_008429357.1| - 0.039 13.7 0.0 0.045 13.5 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain RsgA_GTPase PF03193.16 gi|530548809|ref|YP_008429357.1| - 0.12 12.3 0.0 0.2 11.6 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA_30 PF13604.6 gi|530548809|ref|YP_008429357.1| - 0.16 11.7 0.0 0.24 11.1 0.0 1.6 1 1 0 1 1 1 0 AAA domain ABC_ATPase PF09818.9 gi|530548809|ref|YP_008429357.1| - 0.34 9.6 0.8 0.65 8.7 0.1 1.6 2 0 0 2 2 2 0 Predicted ATPase of the ABC class PEGA PF08308.11 gi|530548810|ref|YP_008429358.1| - 3.9e-52 174.0 1.0 8.4e-14 51.2 0.0 6.2 5 1 1 6 6 6 5 PEGA domain CarboxypepD_reg PF13620.6 gi|530548810|ref|YP_008429358.1| - 2.1e-06 27.9 0.0 0.16 12.3 0.0 4.7 4 0 0 4 4 4 2 Carboxypeptidase regulatory-like domain CarbopepD_reg_2 PF13715.6 gi|530548810|ref|YP_008429358.1| - 0.0014 18.5 0.0 17 5.5 0.1 4.0 2 1 1 3 3 3 2 CarboxypepD_reg-like domain Calycin_like PF13944.6 gi|530548810|ref|YP_008429358.1| - 0.043 14.1 1.3 2 8.7 0.7 3.0 3 0 0 3 3 3 0 Calycin-like beta-barrel domain DUF4399 PF14347.6 gi|530548810|ref|YP_008429358.1| - 0.19 12.1 0.0 4.7 7.6 0.0 2.7 3 0 0 3 3 3 0 Domain of unknown function (DUF4399) DUF5591 PF17884.1 gi|530548811|ref|YP_008429359.1| - 6.2e-50 169.0 0.1 1.7e-49 167.6 0.0 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF5591) PUA PF01472.20 gi|530548811|ref|YP_008429359.1| - 1.4e-10 41.0 2.0 2.5e-10 40.2 2.0 1.4 1 0 0 1 1 1 1 PUA domain TGT_C2 PF14810.6 gi|530548811|ref|YP_008429359.1| - 9.5e-06 25.7 0.0 1.8e-05 24.8 0.0 1.5 1 0 0 1 1 1 1 Patch-forming domain C2 of tRNA-guanine transglycosylase MscS_porin PF12795.7 gi|530548812|ref|YP_008429360.1| - 2.9e-05 23.7 44.5 0.014 15.0 20.9 3.3 1 1 2 3 3 3 3 Mechanosensitive ion channel porin domain DUF1664 PF07889.12 gi|530548812|ref|YP_008429360.1| - 3.5e-05 23.9 32.8 0.046 13.8 5.1 3.8 2 1 2 4 4 4 3 Protein of unknown function (DUF1664) Laminin_I PF06008.14 gi|530548812|ref|YP_008429360.1| - 5.2e-05 23.1 12.0 5.2e-05 23.1 12.0 2.7 1 1 2 3 3 3 2 Laminin Domain I Laminin_II PF06009.12 gi|530548812|ref|YP_008429360.1| - 0.00018 21.5 32.1 0.26 11.3 1.9 4.0 1 1 3 4 4 4 4 Laminin Domain II AAA_13 PF13166.6 gi|530548812|ref|YP_008429360.1| - 0.00022 20.0 46.2 0.025 13.2 26.4 2.1 1 1 1 2 2 2 2 AAA domain WXG100 PF06013.12 gi|530548812|ref|YP_008429360.1| - 0.0015 18.7 16.4 5.2 7.4 0.3 4.9 3 1 1 4 4 4 0 Proteins of 100 residues with WXG DUF4140 PF13600.6 gi|530548812|ref|YP_008429360.1| - 0.0031 17.9 1.9 0.0031 17.9 1.9 5.4 3 1 2 5 5 5 1 N-terminal domain of unknown function (DUF4140) Prefoldin_2 PF01920.20 gi|530548812|ref|YP_008429360.1| - 0.0052 16.7 6.1 0.0052 16.7 6.1 6.5 2 1 2 5 5 5 2 Prefoldin subunit DUF2968 PF11180.8 gi|530548812|ref|YP_008429360.1| - 0.012 15.2 12.6 0.012 15.2 12.6 3.3 2 1 1 3 3 3 0 Protein of unknown function (DUF2968) Syntaxin-6_N PF09177.11 gi|530548812|ref|YP_008429360.1| - 0.014 16.0 4.0 0.014 16.0 4.0 4.5 1 1 2 4 4 4 0 Syntaxin 6, N-terminal HDV_ag PF01517.18 gi|530548812|ref|YP_008429360.1| - 0.017 14.9 2.4 0.017 14.9 2.4 4.1 2 2 2 4 4 3 0 Hepatitis delta virus delta antigen DUF724 PF05266.14 gi|530548812|ref|YP_008429360.1| - 0.024 14.5 48.2 0.013 15.3 17.9 3.1 2 1 1 3 3 3 0 Protein of unknown function (DUF724) Seryl_tRNA_N PF02403.22 gi|530548812|ref|YP_008429360.1| - 0.05 13.8 54.1 0.028 14.6 14.9 4.3 1 1 1 3 3 3 0 Seryl-tRNA synthetase N-terminal domain CENP-H PF05837.12 gi|530548812|ref|YP_008429360.1| - 0.071 13.5 49.9 0.054 13.9 4.2 4.1 2 2 2 4 4 4 0 Centromere protein H (CENP-H) ATG16 PF08614.11 gi|530548812|ref|YP_008429360.1| - 0.092 13.0 44.8 0.28 11.4 11.9 2.5 1 1 0 2 2 2 0 Autophagy protein 16 (ATG16) CENP-F_leu_zip PF10473.9 gi|530548812|ref|YP_008429360.1| - 0.11 12.5 59.6 1.3 9.1 20.0 4.3 1 1 3 4 4 4 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF5082 PF16888.5 gi|530548812|ref|YP_008429360.1| - 0.12 12.6 44.8 0.37 11.1 12.0 4.7 2 1 2 4 4 4 0 Domain of unknown function (DUF5082) Uds1 PF15456.6 gi|530548812|ref|YP_008429360.1| - 0.12 12.5 39.9 0.17 12.0 12.4 3.0 1 1 2 3 3 2 0 Up-regulated During Septation DUF3450 PF11932.8 gi|530548812|ref|YP_008429360.1| - 0.16 11.3 42.3 0.46 9.7 12.7 3.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3450) PE PF00934.20 gi|530548812|ref|YP_008429360.1| - 0.22 11.9 0.7 3.9 7.9 0.4 2.9 2 0 0 2 2 2 0 PE family Snapin_Pallidin PF14712.6 gi|530548812|ref|YP_008429360.1| - 0.32 11.4 45.4 0.55 10.7 5.4 4.5 1 1 1 4 4 4 0 Snapin/Pallidin PLU-1 PF08429.11 gi|530548812|ref|YP_008429360.1| - 0.39 9.8 41.2 0.47 9.6 34.6 2.9 1 1 1 2 2 2 0 PLU-1-like protein T3SSipB PF16535.5 gi|530548812|ref|YP_008429360.1| - 0.47 10.9 27.9 1.8 9.0 9.9 3.2 1 1 0 2 2 2 0 Type III cell invasion protein SipB NPV_P10 PF05531.12 gi|530548812|ref|YP_008429360.1| - 0.48 10.9 21.1 8.4 6.9 0.6 4.7 2 2 0 4 4 4 0 Nucleopolyhedrovirus P10 protein DUF948 PF06103.11 gi|530548812|ref|YP_008429360.1| - 0.53 10.6 13.9 1.2 9.5 1.8 4.0 2 2 2 4 4 4 0 Bacterial protein of unknown function (DUF948) FapA PF03961.13 gi|530548812|ref|YP_008429360.1| - 0.63 8.6 52.9 0.034 12.8 20.4 3.5 1 1 3 4 4 4 0 Flagellar Assembly Protein A Sec34 PF04136.15 gi|530548812|ref|YP_008429360.1| - 0.83 9.5 26.6 1.4 8.8 5.1 3.8 2 2 2 4 4 4 0 Sec34-like family Fib_alpha PF08702.10 gi|530548812|ref|YP_008429360.1| - 1.4 9.1 41.6 0.77 9.9 12.9 3.4 1 1 1 3 3 3 0 Fibrinogen alpha/beta chain family TPR_MLP1_2 PF07926.12 gi|530548812|ref|YP_008429360.1| - 1.5 8.9 52.8 2.1 8.4 4.1 4.1 1 1 2 4 4 4 0 TPR/MLP1/MLP2-like protein DUF4201 PF13870.6 gi|530548812|ref|YP_008429360.1| - 1.7 8.4 58.1 0.13 12.0 21.0 3.5 1 1 3 4 4 4 0 Domain of unknown function (DUF4201) Baculo_PEP_C PF04513.12 gi|530548812|ref|YP_008429360.1| - 1.9 8.5 10.0 3.6 7.6 1.1 3.0 2 1 1 3 3 3 0 Baculovirus polyhedron envelope protein, PEP, C terminus TMPIT PF07851.13 gi|530548812|ref|YP_008429360.1| - 2 7.6 44.0 0.31 10.3 15.6 3.0 1 1 1 2 2 2 0 TMPIT-like protein FlaC_arch PF05377.11 gi|530548812|ref|YP_008429360.1| - 2.2 8.7 31.6 1 9.8 0.8 5.7 2 2 3 6 6 6 0 Flagella accessory protein C (FlaC) Atg14 PF10186.9 gi|530548812|ref|YP_008429360.1| - 3 6.9 57.2 7 5.6 18.8 3.8 1 1 2 3 3 3 0 Vacuolar sorting 38 and autophagy-related subunit 14 Fez1 PF06818.15 gi|530548812|ref|YP_008429360.1| - 3.2 8.1 51.6 1.2 9.6 7.3 3.0 1 1 1 2 2 1 0 Fez1 YabA PF06156.13 gi|530548812|ref|YP_008429360.1| - 3.3 8.4 44.1 2.9 8.6 6.6 4.3 1 1 3 4 4 4 0 Initiation control protein YabA GAS PF13851.6 gi|530548812|ref|YP_008429360.1| - 3.9 6.8 65.6 1.4 8.3 12.8 4.0 1 1 3 4 4 4 0 Growth-arrest specific micro-tubule binding Spc7 PF08317.11 gi|530548812|ref|YP_008429360.1| - 4 6.2 59.3 1.7 7.5 27.7 3.0 1 1 2 3 3 3 0 Spc7 kinetochore protein ERM PF00769.19 gi|530548812|ref|YP_008429360.1| - 4.4 7.0 65.4 20 4.9 32.5 3.0 1 1 1 2 2 2 0 Ezrin/radixin/moesin family UPF0242 PF06785.11 gi|530548812|ref|YP_008429360.1| - 4.6 7.3 59.1 22 5.1 29.5 2.4 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0242) N-terminus MCPsignal PF00015.21 gi|530548812|ref|YP_008429360.1| - 5.8 6.7 18.8 8.1 6.2 3.5 3.2 2 1 0 2 2 2 0 Methyl-accepting chemotaxis protein (MCP) signalling domain DUF4407 PF14362.6 gi|530548812|ref|YP_008429360.1| - 5.8 6.2 38.7 0.07 12.5 16.3 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF4407) Tropomyosin_1 PF12718.7 gi|530548812|ref|YP_008429360.1| - 7.7 6.7 63.0 2.3 8.4 4.3 4.6 2 1 4 6 6 6 0 Tropomyosin like DegS PF05384.11 gi|530548812|ref|YP_008429360.1| - 8 5.9 56.8 3.2 7.2 19.6 2.6 1 1 0 2 2 2 0 Sensor protein DegS LPP PF04728.13 gi|530548812|ref|YP_008429360.1| - 8.9 6.8 19.5 12 6.3 0.2 5.3 4 1 2 6 6 5 0 Lipoprotein leucine-zipper Syntaxin PF00804.25 gi|530548812|ref|YP_008429360.1| - 9.2 5.9 47.7 7.8 6.1 3.4 4.4 1 1 3 4 4 4 0 Syntaxin Radical_SAM PF04055.21 gi|530548813|ref|YP_008429361.1| - 1.4e-18 67.9 0.0 2.1e-18 67.2 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|530548813|ref|YP_008429361.1| - 2.4e-13 50.5 0.2 4e-13 49.8 0.2 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|530548813|ref|YP_008429361.1| - 1.3e-12 47.9 0.2 2.3e-12 47.1 0.2 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain NRDD PF13597.6 gi|530548814|ref|YP_008429362.1| - 5.6e-150 500.8 0.0 6.4e-150 500.6 0.0 1.0 1 0 0 1 1 1 1 Anaerobic ribonucleoside-triphosphate reductase HypA PF01155.19 gi|530548814|ref|YP_008429362.1| - 0.00089 19.3 0.1 0.002 18.1 0.1 1.5 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA TackOD1 PF18551.1 gi|530548814|ref|YP_008429362.1| - 0.0041 16.8 0.0 0.0075 16.0 0.0 1.3 1 0 0 1 1 1 1 Thaumarchaeal output domain 1 Rubredoxin_2 PF18073.1 gi|530548814|ref|YP_008429362.1| - 0.3 10.8 2.5 0.64 9.8 2.5 1.5 1 0 0 1 1 1 0 Rubredoxin metal binding domain Succ_CoA_lig PF13607.6 gi|530548815|ref|YP_008429363.1| - 8.8e-61 203.7 2.4 6.3e-57 191.2 0.2 3.8 4 0 0 4 4 4 2 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|530548815|ref|YP_008429363.1| - 9.9e-28 97.0 2.6 1.4e-25 90.1 0.3 3.1 3 0 0 3 3 3 1 CoA binding domain CoA_binding PF02629.19 gi|530548815|ref|YP_008429363.1| - 6.7e-19 68.4 6.1 1.3e-18 67.5 1.7 3.1 3 0 0 3 3 3 1 CoA binding domain Semialdhyde_dh PF01118.24 gi|530548815|ref|YP_008429363.1| - 0.0013 19.1 0.6 2.3 8.6 1.1 4.1 3 2 0 3 3 3 1 Semialdehyde dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.22 gi|530548815|ref|YP_008429363.1| - 0.0031 18.3 0.8 0.1 13.4 0.1 3.1 2 1 1 3 3 3 1 Oxidoreductase family, NAD-binding Rossmann fold Catalase_C PF18011.1 gi|530548815|ref|YP_008429363.1| - 0.0061 16.2 0.5 0.45 10.1 0.0 3.1 3 1 0 3 3 3 1 C-terminal domain found in long catalases NAD_Gly3P_dh_N PF01210.23 gi|530548815|ref|YP_008429363.1| - 0.0094 15.9 0.0 0.022 14.7 0.0 1.6 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Asparaginase_C PF17763.1 gi|530548815|ref|YP_008429363.1| - 0.016 15.4 1.8 0.46 10.7 0.2 3.5 3 2 0 3 3 3 0 Glutaminase/Asparaginase C-terminal domain F420_oxidored PF03807.17 gi|530548815|ref|YP_008429363.1| - 0.02 15.5 1.3 0.02 15.5 1.3 3.2 3 2 1 4 4 4 0 NADP oxidoreductase coenzyme F420-dependent Hpr_kinase_N PF02603.16 gi|530548815|ref|YP_008429363.1| - 0.052 13.6 0.0 0.19 11.7 0.0 2.0 2 0 0 2 2 2 0 HPr Serine kinase N terminus DUF4849 PF16141.5 gi|530548815|ref|YP_008429363.1| - 0.061 12.6 0.1 0.21 10.8 0.0 1.8 2 0 0 2 2 2 0 Putative glycoside hydrolase Family 18, chitinase_18 PucR PF07905.11 gi|530548815|ref|YP_008429363.1| - 0.068 13.5 0.1 13 6.1 0.0 2.5 2 0 0 2 2 2 0 Purine catabolism regulatory protein-like family SDH_sah PF01972.16 gi|530548816|ref|YP_008429364.1| - 5.4e-157 521.1 1.1 6e-157 521.0 1.1 1.0 1 0 0 1 1 1 1 Serine dehydrogenase proteinase CLP_protease PF00574.23 gi|530548816|ref|YP_008429364.1| - 1.5e-07 31.5 0.2 9.6e-07 28.9 0.0 2.0 2 0 0 2 2 2 1 Clp protease Peptidase_S49 PF01343.18 gi|530548816|ref|YP_008429364.1| - 0.0037 17.2 0.0 0.0073 16.3 0.0 1.4 1 0 0 1 1 1 1 Peptidase family S49 ECH_1 PF00378.20 gi|530548816|ref|YP_008429364.1| - 0.0038 16.6 0.1 0.0091 15.3 0.0 1.6 1 1 0 1 1 1 1 Enoyl-CoA hydratase/isomerase Calmodulin_bind PF07887.11 gi|530548816|ref|YP_008429364.1| - 0.016 14.6 0.0 0.021 14.1 0.0 1.1 1 0 0 1 1 1 0 Calmodulin binding protein-like DUF1688 PF07958.11 gi|530548816|ref|YP_008429364.1| - 0.11 11.2 0.0 0.18 10.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1688) AA_kinase PF00696.28 gi|530548817|ref|YP_008429365.1| - 6.3e-30 104.5 0.1 8.7e-30 104.1 0.1 1.2 1 0 0 1 1 1 1 Amino acid kinase family Pyr_redox_2 PF07992.14 gi|530548818|ref|YP_008429366.1| - 0.00044 19.6 0.3 0.0019 17.5 0.1 1.9 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Amino_oxidase PF01593.24 gi|530548818|ref|YP_008429366.1| - 0.0064 15.8 0.0 0.019 14.3 0.0 2.0 1 1 0 1 1 1 1 Flavin containing amine oxidoreductase DUF5381 PF17353.2 gi|530548818|ref|YP_008429366.1| - 0.034 13.9 0.1 0.056 13.2 0.1 1.3 1 0 0 1 1 1 0 Family of unknown function (DUF5381) NAD_binding_8 PF13450.6 gi|530548819|ref|YP_008429367.1| - 2.2e-12 47.0 0.1 3.3e-12 46.5 0.1 1.3 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Amino_oxidase PF01593.24 gi|530548819|ref|YP_008429367.1| - 4.6e-07 29.5 0.0 4.6e-07 29.5 0.0 1.0 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase Pyr_redox_2 PF07992.14 gi|530548819|ref|YP_008429367.1| - 1.5e-05 24.4 0.0 1.7e-05 24.2 0.0 1.0 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|530548819|ref|YP_008429367.1| - 2.5e-05 23.6 0.1 2.9e-05 23.3 0.1 1.1 1 0 0 1 1 1 1 FAD binding domain FAD_binding_3 PF01494.19 gi|530548819|ref|YP_008429367.1| - 0.00017 21.0 0.3 0.00023 20.5 0.3 1.2 1 0 0 1 1 1 1 FAD binding domain DAO PF01266.24 gi|530548819|ref|YP_008429367.1| - 0.00021 21.0 0.0 0.00021 21.0 0.0 1.1 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_oxidored PF12831.7 gi|530548819|ref|YP_008429367.1| - 0.00093 18.6 0.1 0.0012 18.3 0.1 1.1 1 0 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|530548819|ref|YP_008429367.1| - 0.0016 17.2 0.2 0.0023 16.7 0.2 1.2 1 0 0 1 1 1 1 HI0933-like protein Pyr_redox PF00070.27 gi|530548819|ref|YP_008429367.1| - 0.003 18.1 0.3 0.0072 16.9 0.2 1.7 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase UDPG_MGDP_dh_N PF03721.14 gi|530548819|ref|YP_008429367.1| - 0.012 15.2 0.0 0.019 14.5 0.0 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain MCRA PF06100.11 gi|530548819|ref|YP_008429367.1| - 0.017 14.0 0.0 0.019 13.8 0.0 1.1 1 0 0 1 1 1 0 MCRA family Thi4 PF01946.17 gi|530548819|ref|YP_008429367.1| - 0.1 11.8 0.1 0.15 11.3 0.1 1.3 1 0 0 1 1 1 0 Thi4 family ApbA PF02558.16 gi|530548819|ref|YP_008429367.1| - 0.11 12.1 0.2 0.16 11.6 0.2 1.3 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA CTP_transf_like PF01467.26 gi|530548820|ref|YP_008429368.1| - 6e-15 55.7 0.0 7.4e-15 55.4 0.0 1.1 1 0 0 1 1 1 1 Cytidylyltransferase-like FAD_syn PF06574.12 gi|530548820|ref|YP_008429368.1| - 0.00053 19.9 0.1 0.00089 19.2 0.1 1.4 1 0 0 1 1 1 1 FAD synthetase Succ_CoA_lig PF13607.6 gi|530548821|ref|YP_008429369.1| - 3.2e-54 182.5 0.5 5.6e-54 181.7 0.2 1.5 2 0 0 2 2 2 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|530548821|ref|YP_008429369.1| - 6.4e-19 68.6 0.2 1.7e-18 67.2 0.2 1.7 1 0 0 1 1 1 1 CoA binding domain CoA_binding PF02629.19 gi|530548821|ref|YP_008429369.1| - 7.2e-07 29.8 1.3 1.6e-06 28.7 1.3 1.6 1 0 0 1 1 1 1 CoA binding domain F420_oxidored PF03807.17 gi|530548821|ref|YP_008429369.1| - 0.018 15.6 0.1 0.045 14.3 0.1 1.7 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent NAD_Gly3P_dh_N PF01210.23 gi|530548821|ref|YP_008429369.1| - 0.086 12.8 0.2 0.17 11.9 0.2 1.4 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Flavin_Reduct PF01613.18 gi|530548823|ref|YP_008429371.1| - 4.5e-24 85.2 0.0 5.2e-24 85.0 0.0 1.1 1 0 0 1 1 1 1 Flavin reductase like domain Peptidase_M22 PF00814.25 gi|530548824|ref|YP_008429372.1| - 3.2e-99 332.0 0.1 3.8e-99 331.8 0.1 1.0 1 0 0 1 1 1 1 Glycoprotease family Carbam_trans_N PF02543.15 gi|530548824|ref|YP_008429372.1| - 0.0045 16.7 0.0 0.12 12.1 0.0 2.2 2 0 0 2 2 2 1 Carbamoyltransferase N-terminus NAD_kinase PF01513.21 gi|530548825|ref|YP_008429373.1| - 7.4e-69 232.2 0.1 1.5e-68 231.1 0.1 1.5 1 1 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.24 gi|530548825|ref|YP_008429373.1| - 0.021 14.4 0.0 0.033 13.8 0.0 1.3 1 0 0 1 1 1 0 Diacylglycerol kinase catalytic domain PBSX_XtrA PF17356.2 gi|530548825|ref|YP_008429373.1| - 0.099 12.5 0.0 0.52 10.2 0.0 2.0 2 0 0 2 2 2 0 Phage-like element PBSX protein XtrA LPG_synthase_TM PF03706.13 gi|530548826|ref|YP_008429374.1| - 1.1e-57 195.9 23.6 1.2e-57 195.7 23.6 1.0 1 0 0 1 1 1 1 Lysylphosphatidylglycerol synthase TM region RabGAP-TBC PF00566.18 gi|530548826|ref|YP_008429374.1| - 0.023 14.4 1.6 0.04 13.6 1.6 1.3 1 0 0 1 1 1 0 Rab-GTPase-TBC domain Methyltr_RsmB-F PF01189.17 gi|530548827|ref|YP_008429375.1| - 2.6e-57 193.7 0.0 3.4e-57 193.3 0.0 1.1 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F PUA PF01472.20 gi|530548827|ref|YP_008429375.1| - 3.4e-19 68.6 1.1 8.3e-19 67.3 1.1 1.6 1 0 0 1 1 1 1 PUA domain Methyltransf_31 PF13847.6 gi|530548827|ref|YP_008429375.1| - 6e-11 42.4 0.0 9e-11 41.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltr_RsmF_N PF17125.5 gi|530548827|ref|YP_008429375.1| - 2.8e-08 34.2 0.2 1.2e-06 28.9 0.1 2.4 2 0 0 2 2 2 1 N-terminal domain of 16S rRNA methyltransferase RsmF Methyltransf_25 PF13649.6 gi|530548827|ref|YP_008429375.1| - 1.3e-05 25.9 0.0 2.9e-05 24.7 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|530548827|ref|YP_008429375.1| - 4.1e-05 23.0 0.0 8.4e-05 22.0 0.0 1.4 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family PCMT PF01135.19 gi|530548827|ref|YP_008429375.1| - 0.00077 19.3 0.0 0.002 17.9 0.0 1.7 2 0 0 2 2 2 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_4 PF02390.17 gi|530548827|ref|YP_008429375.1| - 0.00086 18.8 0.1 0.061 12.8 0.0 2.3 2 0 0 2 2 2 1 Putative methyltransferase FtsJ PF01728.19 gi|530548827|ref|YP_008429375.1| - 0.0067 16.6 0.0 0.017 15.3 0.0 1.7 1 1 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_15 PF09445.10 gi|530548827|ref|YP_008429375.1| - 0.011 15.3 0.0 0.016 14.8 0.0 1.3 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase UPF0113 PF03657.13 gi|530548827|ref|YP_008429375.1| - 0.033 14.5 0.1 0.082 13.2 0.1 1.7 1 0 0 1 1 1 0 UPF0113 PUA domain MCD_N PF17408.2 gi|530548827|ref|YP_008429375.1| - 0.045 13.9 0.0 0.11 12.7 0.0 1.6 1 0 0 1 1 1 0 Malonyl-CoA decarboxylase N-terminal domain DUF1967 PF09269.11 gi|530548827|ref|YP_008429375.1| - 0.072 13.0 2.2 3.9 7.5 0.1 3.4 3 0 0 3 3 3 0 Domain of unknown function (DUF1967) Methyltransf_11 PF08241.12 gi|530548827|ref|YP_008429375.1| - 0.14 12.8 0.0 0.6 10.8 0.0 2.1 1 1 0 1 1 1 0 Methyltransferase domain N6_Mtase PF02384.16 gi|530548827|ref|YP_008429375.1| - 0.17 11.1 0.0 0.27 10.4 0.0 1.5 1 1 0 1 1 1 0 N-6 DNA Methylase DUF3201 PF11447.8 gi|530548828|ref|YP_008429376.1| - 2.2e-60 202.5 7.0 2.6e-60 202.3 7.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3201) LEA_2 PF03168.13 gi|530548829|ref|YP_008429377.1| - 1.7e-11 44.6 0.2 8.1e-10 39.1 0.1 2.6 3 0 0 3 3 3 2 Late embryogenesis abundant protein CARDB PF07705.11 gi|530548830|ref|YP_008429378.1| - 3.9e-19 68.8 1.7 0.0025 18.1 0.0 7.0 5 2 1 6 6 6 5 CARDB NPCBM_assoc PF10633.9 gi|530548830|ref|YP_008429378.1| - 7.5e-16 58.2 0.0 0.05 13.9 0.0 7.8 7 2 0 7 7 7 4 NPCBM-associated, NEW3 domain of alpha-galactosidase DUF11 PF01345.18 gi|530548830|ref|YP_008429378.1| - 3.6e-11 43.2 0.0 0.23 11.8 0.1 6.2 5 1 0 5 5 5 3 Domain of unknown function DUF11 MG2 PF01835.19 gi|530548830|ref|YP_008429378.1| - 2e-06 28.2 0.0 0.11 13.0 0.0 4.4 3 1 0 3 3 3 2 MG2 domain Cohesin PF00963.18 gi|530548830|ref|YP_008429378.1| - 2.3e-05 24.6 7.5 0.072 13.3 0.3 5.0 5 0 0 5 5 5 2 Cohesin domain TRAP_beta PF05753.14 gi|530548830|ref|YP_008429378.1| - 3.1e-05 23.5 0.3 0.49 9.8 0.1 4.0 4 1 1 5 5 5 2 Translocon-associated protein beta (TRAPB) DUF1735 PF08522.10 gi|530548830|ref|YP_008429378.1| - 0.00055 20.5 5.2 0.0032 18.1 0.1 4.4 4 2 0 4 4 4 1 Domain of unknown function (DUF1735) DUF4832 PF16116.5 gi|530548830|ref|YP_008429378.1| - 0.00056 19.8 0.4 12 5.6 0.0 5.2 5 1 0 5 5 5 1 Domain of unknown function (DUF4832) Peptidase_M73 PF12389.8 gi|530548830|ref|YP_008429378.1| - 0.025 14.4 0.4 5.7 6.7 0.0 3.3 4 0 0 4 4 4 0 Camelysin metallo-endopeptidase A2M PF00207.22 gi|530548830|ref|YP_008429378.1| - 0.064 13.1 0.1 11 5.9 0.0 3.5 3 0 0 3 3 3 0 Alpha-2-macroglobulin family REJ PF02010.15 gi|530548830|ref|YP_008429378.1| - 0.1 11.4 0.0 0.22 10.3 0.0 1.5 1 0 0 1 1 1 0 REJ domain Rib PF08428.10 gi|530548830|ref|YP_008429378.1| - 0.39 10.7 4.3 1.4 8.9 0.0 3.5 3 1 1 4 4 4 0 Rib/alpha-like repeat DUF5643 PF18705.1 gi|530548830|ref|YP_008429378.1| - 3.4 7.6 6.9 8.9 6.3 0.0 4.2 4 0 0 4 4 4 0 Family of unknown function (DUF5643) MMPL PF03176.15 gi|530548831|ref|YP_008429379.1| - 2.3e-57 194.5 3.8 2.7e-32 112.0 2.3 2.2 2 0 0 2 2 2 2 MMPL family Patched PF02460.18 gi|530548831|ref|YP_008429379.1| - 2.5e-16 59.0 25.1 2.5e-10 39.1 6.7 2.9 3 0 0 3 3 3 2 Patched family SecD_SecF PF02355.16 gi|530548831|ref|YP_008429379.1| - 1.6e-14 53.7 17.4 4.6e-10 39.2 7.5 2.5 2 0 0 2 2 2 2 Protein export membrane protein Sterol-sensing PF12349.8 gi|530548831|ref|YP_008429379.1| - 7.8e-09 35.6 9.0 0.00069 19.5 0.2 2.6 2 0 0 2 2 2 2 Sterol-sensing domain of SREBP cleavage-activation ACR_tran PF00873.19 gi|530548831|ref|YP_008429379.1| - 5.5e-07 27.7 15.7 0.00037 18.3 10.8 2.3 2 0 0 2 2 2 2 AcrB/AcrD/AcrF family CorC_HlyC PF03471.17 gi|530548831|ref|YP_008429379.1| - 0.0027 17.7 0.4 2.3 8.3 0.0 3.2 3 0 0 3 3 3 2 Transporter associated domain Radical_SAM PF04055.21 gi|530548832|ref|YP_008429380.1| - 3.1e-19 69.9 0.1 8.8e-19 68.5 0.0 1.8 2 0 0 2 2 2 1 Radical SAM superfamily B12-binding PF02310.19 gi|530548832|ref|YP_008429380.1| - 0.021 14.9 0.0 0.051 13.6 0.0 1.7 1 0 0 1 1 1 0 B12 binding domain AF2331-like PF14556.6 gi|530548832|ref|YP_008429380.1| - 0.069 13.7 0.0 0.19 12.3 0.0 1.7 1 0 0 1 1 1 0 AF2331-like B12-binding PF02310.19 gi|530548833|ref|YP_008429381.1| - 1.2e-25 89.8 0.6 6.1e-24 84.4 0.3 2.3 2 0 0 2 2 2 1 B12 binding domain Radical_SAM PF04055.21 gi|530548833|ref|YP_008429381.1| - 5.6e-20 72.4 0.1 1.3e-18 68.0 0.0 2.6 2 1 0 2 2 2 1 Radical SAM superfamily PFK PF00365.20 gi|530548833|ref|YP_008429381.1| - 0.057 12.7 0.1 9.4 5.5 0.0 2.5 2 1 1 3 3 3 0 Phosphofructokinase AsnC_trans_reg PF01037.21 gi|530548834|ref|YP_008429382.1| - 7.2e-10 38.7 0.0 7.9e-10 38.6 0.0 1.1 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain ACT_4 PF13291.6 gi|530548834|ref|YP_008429382.1| - 0.025 15.2 0.0 1.9 9.1 0.0 2.1 2 0 0 2 2 2 0 ACT domain PDZ_2 PF13180.6 gi|530548834|ref|YP_008429382.1| - 0.068 13.5 0.0 0.071 13.4 0.0 1.2 1 0 0 1 1 1 0 PDZ domain MarR PF01047.22 gi|530548835|ref|YP_008429383.1| - 2.3e-08 33.8 0.0 4.5e-08 32.9 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|530548835|ref|YP_008429383.1| - 1.7e-07 30.7 0.2 1.8e-05 24.2 0.0 2.9 2 1 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|530548835|ref|YP_008429383.1| - 4.1e-07 29.8 0.0 7.3e-07 29.0 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|530548835|ref|YP_008429383.1| - 1.5e-06 27.9 0.1 2.5e-05 24.0 0.0 2.5 3 0 0 3 3 3 1 IclR helix-turn-helix domain TrmB PF01978.19 gi|530548835|ref|YP_008429383.1| - 1.6e-06 27.9 1.1 4.1e-06 26.6 0.1 2.1 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.6 gi|530548835|ref|YP_008429383.1| - 3.1e-06 27.6 0.0 8.3e-06 26.2 0.0 1.7 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_20 PF12840.7 gi|530548835|ref|YP_008429383.1| - 4e-05 23.6 0.0 0.00013 22.0 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|530548835|ref|YP_008429383.1| - 7.6e-05 22.5 1.3 0.00019 21.2 0.0 2.3 3 0 0 3 3 2 1 Bacterial regulatory protein, arsR family Penicillinase_R PF03965.16 gi|530548835|ref|YP_008429383.1| - 0.00037 20.8 1.3 0.00057 20.2 0.3 1.8 2 0 0 2 2 2 1 Penicillinase repressor RepL PF05732.11 gi|530548835|ref|YP_008429383.1| - 0.00096 18.6 1.8 0.012 15.0 0.0 2.2 2 0 0 2 2 2 1 Firmicute plasmid replication protein (RepL) Sigma70_r4 PF04545.16 gi|530548835|ref|YP_008429383.1| - 0.0011 18.5 2.3 0.0075 15.8 0.0 3.0 4 0 0 4 4 4 1 Sigma-70, region 4 GntR PF00392.21 gi|530548835|ref|YP_008429383.1| - 0.0015 18.1 0.5 0.0066 16.1 0.0 2.2 3 0 0 3 3 3 1 Bacterial regulatory proteins, gntR family DprA_WH PF17782.1 gi|530548835|ref|YP_008429383.1| - 0.0024 18.0 0.0 0.0098 16.0 0.0 2.0 2 0 0 2 2 2 1 DprA winged helix domain HTH_Crp_2 PF13545.6 gi|530548835|ref|YP_008429383.1| - 0.0027 17.7 0.0 0.0085 16.0 0.0 1.9 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain Rrf2 PF02082.20 gi|530548835|ref|YP_008429383.1| - 0.0043 17.4 0.0 0.012 16.0 0.0 1.7 1 0 0 1 1 1 1 Transcriptional regulator HTH_11 PF08279.12 gi|530548835|ref|YP_008429383.1| - 0.0053 16.7 0.5 0.023 14.6 0.0 2.4 2 1 1 3 3 3 1 HTH domain HTH_29 PF13551.6 gi|530548835|ref|YP_008429383.1| - 0.0084 16.1 0.0 0.021 14.9 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn helix HTH_36 PF13730.6 gi|530548835|ref|YP_008429383.1| - 0.0096 15.9 0.2 0.036 14.0 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_28 PF13518.6 gi|530548835|ref|YP_008429383.1| - 0.015 15.4 0.2 0.17 12.0 0.0 2.6 3 0 0 3 3 3 0 Helix-turn-helix domain HTH_AraC PF00165.23 gi|530548835|ref|YP_008429383.1| - 0.015 15.4 0.0 0.039 14.1 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix proteins, AraC family FUR PF01475.19 gi|530548835|ref|YP_008429383.1| - 0.032 14.4 0.4 0.3 11.2 0.0 2.2 1 1 0 2 2 2 0 Ferric uptake regulator family DUF2250 PF10007.9 gi|530548835|ref|YP_008429383.1| - 0.032 14.3 1.8 0.083 13.0 0.4 2.1 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) DNA_primase_lrg PF04104.14 gi|530548835|ref|YP_008429383.1| - 0.062 12.7 1.9 0.08 12.3 1.9 1.3 1 0 0 1 1 1 0 Eukaryotic and archaeal DNA primase, large subunit 7TMR-HDED PF07697.11 gi|530548835|ref|YP_008429383.1| - 0.12 12.5 5.4 0.17 12.0 5.4 1.2 1 0 0 1 1 1 0 7TM-HD extracellular TFIID_NTD2 PF04494.15 gi|530548835|ref|YP_008429383.1| - 0.13 12.5 3.0 0.2 11.9 3.0 1.3 1 0 0 1 1 1 0 WD40 associated region in TFIID subunit, NTD2 domain DUF883 PF05957.13 gi|530548835|ref|YP_008429383.1| - 0.15 12.7 2.0 0.3 11.7 2.0 1.5 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF883) CarS-like PF01864.17 gi|530548836|ref|YP_008429384.1| - 3.2e-60 203.1 2.0 3.5e-60 202.9 2.0 1.0 1 0 0 1 1 1 1 CDP-archaeol synthase CTP_transf_1 PF01148.20 gi|530548836|ref|YP_008429384.1| - 3.9e-10 39.9 2.5 3.9e-10 39.9 2.5 1.6 2 0 0 2 2 2 1 Cytidylyltransferase family Flavi_M PF01004.19 gi|530548836|ref|YP_008429384.1| - 0.29 10.9 1.8 0.28 11.0 0.4 1.6 2 0 0 2 2 2 0 Flavivirus envelope glycoprotein M ThiS PF02597.20 gi|530548837|ref|YP_008429385.1| - 4.9e-20 71.9 0.0 5.5e-20 71.8 0.0 1.0 1 0 0 1 1 1 1 ThiS family RDM PF11002.8 gi|530548837|ref|YP_008429385.1| - 0.01 15.8 0.1 0.016 15.2 0.1 1.3 1 0 0 1 1 1 0 RFPL defining motif (RDM) Ub-Mut7C PF14451.6 gi|530548837|ref|YP_008429385.1| - 0.066 13.1 0.0 0.17 11.8 0.0 1.6 2 0 0 2 2 2 0 Mut7-C ubiquitin TGS PF02824.21 gi|530548837|ref|YP_008429385.1| - 0.1 12.7 0.0 15 5.7 0.0 2.1 2 0 0 2 2 2 0 TGS domain ThiF PF00899.21 gi|530548838|ref|YP_008429386.1| - 1.3e-55 188.4 0.0 1.5e-55 188.2 0.0 1.0 1 0 0 1 1 1 1 ThiF family 2-Hacid_dh_C PF02826.19 gi|530548838|ref|YP_008429386.1| - 0.00012 21.5 0.1 0.0017 17.7 0.0 2.4 3 0 0 3 3 3 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ApbA PF02558.16 gi|530548838|ref|YP_008429386.1| - 0.00054 19.6 0.0 0.0009 18.9 0.0 1.5 1 1 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Sacchrp_dh_NADP PF03435.18 gi|530548838|ref|YP_008429386.1| - 0.00083 19.6 0.0 0.0037 17.5 0.0 2.0 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain 3HCDH_N PF02737.18 gi|530548838|ref|YP_008429386.1| - 0.0011 18.9 0.0 0.0017 18.3 0.0 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_7 PF13241.6 gi|530548838|ref|YP_008429386.1| - 0.0011 19.3 0.0 0.0026 18.2 0.0 1.6 1 0 0 1 1 1 1 Putative NAD(P)-binding UDPG_MGDP_dh_N PF03721.14 gi|530548838|ref|YP_008429386.1| - 0.0015 18.1 0.0 0.0027 17.3 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DAO PF01266.24 gi|530548838|ref|YP_008429386.1| - 0.036 13.7 0.4 0.092 12.3 0.3 1.7 1 1 1 2 2 2 0 FAD dependent oxidoreductase Shikimate_DH PF01488.20 gi|530548838|ref|YP_008429386.1| - 0.051 13.6 0.1 0.38 10.8 0.0 2.2 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase NAD_binding_2 PF03446.15 gi|530548838|ref|YP_008429386.1| - 0.079 13.1 0.0 0.24 11.6 0.0 2.0 1 1 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase Pyr_redox_2 PF07992.14 gi|530548838|ref|YP_008429386.1| - 0.13 11.5 0.1 0.24 10.6 0.1 1.5 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|530548838|ref|YP_008429386.1| - 0.13 11.5 0.1 0.17 11.1 0.1 1.1 1 0 0 1 1 1 0 FAD binding domain Ldh_1_N PF00056.23 gi|530548838|ref|YP_008429386.1| - 0.17 11.9 2.2 1.4 9.1 0.1 2.7 3 0 0 3 3 3 0 lactate/malate dehydrogenase, NAD binding domain MoaE PF02391.17 gi|530548839|ref|YP_008429387.1| - 3.8e-37 127.0 0.1 4.7e-37 126.7 0.1 1.0 1 0 0 1 1 1 1 MoaE protein Adenosine_kin PF04008.14 gi|530548841|ref|YP_008429389.1| - 1.7e-62 209.8 0.5 1.9e-62 209.6 0.5 1.0 1 0 0 1 1 1 1 Adenosine specific kinase Ham1p_like PF01725.16 gi|530548842|ref|YP_008429390.1| - 3.9e-51 173.7 0.0 4.3e-51 173.5 0.0 1.0 1 0 0 1 1 1 1 Ham1 family DUF5405 PF17399.2 gi|530548842|ref|YP_008429390.1| - 0.14 12.4 0.0 0.3 11.4 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF5405) HTH_24 PF13412.6 gi|530548843|ref|YP_008429391.1| - 1.7e-17 62.7 1.9 5.9e-15 54.6 1.2 2.2 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding AsnC_trans_reg PF01037.21 gi|530548843|ref|YP_008429391.1| - 2.2e-15 56.4 0.1 3.2e-15 55.9 0.1 1.3 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_AsnC-type PF13404.6 gi|530548843|ref|YP_008429391.1| - 1.4e-12 47.2 0.2 4.8e-11 42.3 0.1 2.3 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain TrmB PF01978.19 gi|530548843|ref|YP_008429391.1| - 2.5e-05 24.1 0.4 5.3e-05 23.0 0.1 1.7 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|530548843|ref|YP_008429391.1| - 3.8e-05 23.4 0.0 0.00015 21.5 0.0 1.8 2 0 0 2 2 2 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|530548843|ref|YP_008429391.1| - 4.3e-05 23.3 0.1 0.00029 20.7 0.0 2.1 2 0 0 2 2 2 1 MarR family HTH_5 PF01022.20 gi|530548843|ref|YP_008429391.1| - 0.00019 21.2 0.3 0.0003 20.6 0.3 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR PF01047.22 gi|530548843|ref|YP_008429391.1| - 0.0004 20.2 0.1 0.00081 19.3 0.1 1.5 1 0 0 1 1 1 1 MarR family HTH_8 PF02954.19 gi|530548843|ref|YP_008429391.1| - 0.00041 20.1 0.1 0.0007 19.3 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, Fis family HTH_20 PF12840.7 gi|530548843|ref|YP_008429391.1| - 0.00061 19.8 0.0 0.0019 18.2 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|530548843|ref|YP_008429391.1| - 0.00071 19.5 1.6 0.0011 18.9 0.4 1.9 2 0 0 2 2 2 1 HTH domain HTH_23 PF13384.6 gi|530548843|ref|YP_008429391.1| - 0.00074 19.2 0.1 0.045 13.6 0.0 2.3 2 0 0 2 2 2 1 Homeodomain-like domain B-block_TFIIIC PF04182.12 gi|530548843|ref|YP_008429391.1| - 0.00089 19.4 0.1 0.0047 17.1 0.1 1.9 1 1 1 2 2 2 1 B-block binding subunit of TFIIIC HTH_30 PF13556.6 gi|530548843|ref|YP_008429391.1| - 0.0011 18.7 0.1 0.009 15.8 0.0 2.1 2 0 0 2 2 2 1 PucR C-terminal helix-turn-helix domain HTH_27 PF13463.6 gi|530548843|ref|YP_008429391.1| - 0.0011 19.4 0.0 0.0033 17.9 0.0 1.7 1 0 0 1 1 1 1 Winged helix DNA-binding domain Mga PF05043.13 gi|530548843|ref|YP_008429391.1| - 0.0084 16.7 0.2 0.014 16.0 0.2 1.4 1 0 0 1 1 1 1 Mga helix-turn-helix domain HTH_3 PF01381.22 gi|530548843|ref|YP_008429391.1| - 0.011 15.8 0.2 4 7.6 0.1 2.8 3 0 0 3 3 2 0 Helix-turn-helix Sigma70_r4 PF04545.16 gi|530548843|ref|YP_008429391.1| - 0.014 14.9 0.1 5.9 6.5 0.0 2.6 2 0 0 2 2 2 0 Sigma-70, region 4 HEPN PF05168.14 gi|530548843|ref|YP_008429391.1| - 0.021 14.9 0.2 0.042 14.0 0.1 1.5 1 1 0 1 1 1 0 HEPN domain DUF2250 PF10007.9 gi|530548843|ref|YP_008429391.1| - 0.027 14.6 0.4 0.052 13.7 0.2 1.5 2 0 0 2 2 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_10 PF04967.12 gi|530548843|ref|YP_008429391.1| - 0.028 14.2 0.1 0.064 13.1 0.0 1.6 2 0 0 2 2 1 0 HTH DNA binding domain PTPS PF01242.19 gi|530548843|ref|YP_008429391.1| - 0.033 14.2 0.0 0.099 12.6 0.0 1.8 2 0 0 2 2 2 0 6-pyruvoyl tetrahydropterin synthase GntR PF00392.21 gi|530548843|ref|YP_008429391.1| - 0.036 13.7 0.0 0.44 10.2 0.0 2.4 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family HTH_micro PF17007.5 gi|530548843|ref|YP_008429391.1| - 0.038 12.8 0.2 0.054 12.3 0.2 1.2 1 1 0 1 1 1 0 HTH-like HTH_28 PF13518.6 gi|530548843|ref|YP_008429391.1| - 0.045 13.9 0.0 0.18 12.0 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_19 PF12844.7 gi|530548843|ref|YP_008429391.1| - 0.068 13.2 0.5 8.7 6.5 0.1 2.9 3 0 0 3 3 3 0 Helix-turn-helix domain HTH_41 PF14502.6 gi|530548843|ref|YP_008429391.1| - 0.073 12.8 0.0 0.26 11.0 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain Rrf2 PF02082.20 gi|530548843|ref|YP_008429391.1| - 0.11 12.9 0.2 1.3 9.4 0.1 2.1 2 0 0 2 2 2 0 Transcriptional regulator HTH_Crp_2 PF13545.6 gi|530548843|ref|YP_008429391.1| - 0.12 12.3 0.0 0.43 10.6 0.0 1.9 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain HTH_1 PF00126.27 gi|530548843|ref|YP_008429391.1| - 0.12 12.3 0.0 15 5.7 0.0 2.3 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family DDE_Tnp_IS66 PF03050.14 gi|530548844|ref|YP_008429392.1| - 0.0042 16.6 0.0 0.0045 16.5 0.0 1.1 1 0 0 1 1 1 1 Transposase IS66 family DDE_Tnp_1_2 PF13586.6 gi|530548845|ref|YP_008429393.1| - 0.097 13.1 0.0 0.13 12.7 0.0 1.1 1 0 0 1 1 1 0 Transposase DDE domain FmdE PF02663.14 gi|530548846|ref|YP_008429394.1| - 3.1e-36 124.3 0.0 4.2e-36 123.9 0.0 1.2 1 0 0 1 1 1 1 FmdE, Molybdenum formylmethanofuran dehydrogenase operon zf-dskA_traR PF01258.17 gi|530548846|ref|YP_008429394.1| - 1.3e-07 31.4 0.6 2.5e-07 30.5 0.2 1.7 2 0 0 2 2 2 1 Prokaryotic dksA/traR C4-type zinc finger TrmO PF01980.16 gi|530548847|ref|YP_008429395.1| - 2.4e-35 121.3 0.0 2.9e-35 121.0 0.0 1.1 1 0 0 1 1 1 1 tRNA-methyltransferase O Peripla_BP_2 PF01497.18 gi|530548848|ref|YP_008429396.1| - 1.3e-28 100.2 0.0 1.9e-28 99.7 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein FecCD PF01032.18 gi|530548849|ref|YP_008429397.1| - 6.6e-98 327.5 34.2 8.2e-98 327.2 34.2 1.0 1 0 0 1 1 1 1 FecCD transport family ABC-3 PF00950.17 gi|530548849|ref|YP_008429397.1| - 2.5e-05 23.9 21.6 4.7e-05 23.0 21.6 1.4 1 0 0 1 1 1 1 ABC 3 transport family KASH PF10541.9 gi|530548849|ref|YP_008429397.1| - 0.16 12.3 0.2 0.16 12.3 0.2 2.6 2 0 0 2 2 2 0 Nuclear envelope localisation domain ABC_tran PF00005.27 gi|530548850|ref|YP_008429398.1| - 6.6e-31 107.6 0.0 9.5e-31 107.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|530548850|ref|YP_008429398.1| - 2.1e-11 44.2 0.2 1.6e-05 24.9 0.1 2.3 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|530548850|ref|YP_008429398.1| - 1.3e-05 24.7 0.3 0.01 15.3 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|530548850|ref|YP_008429398.1| - 2e-05 25.2 0.2 3.7e-05 24.3 0.2 1.3 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|530548850|ref|YP_008429398.1| - 3e-05 23.9 0.3 0.012 15.3 0.1 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.6 gi|530548850|ref|YP_008429398.1| - 4.9e-05 23.0 0.0 0.00011 21.9 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_27 PF13514.6 gi|530548850|ref|YP_008429398.1| - 0.0011 18.7 0.0 0.002 17.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|530548850|ref|YP_008429398.1| - 0.0024 18.2 0.1 0.012 15.9 0.1 1.9 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|530548850|ref|YP_008429398.1| - 0.0038 17.6 0.0 0.0055 17.1 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|530548850|ref|YP_008429398.1| - 0.0039 17.1 0.1 0.01 15.8 0.0 1.7 2 0 0 2 2 2 1 RsgA GTPase NTPase_1 PF03266.15 gi|530548850|ref|YP_008429398.1| - 0.0039 17.1 0.2 0.048 13.6 0.0 2.5 2 1 0 3 3 3 1 NTPase ATPase_2 PF01637.18 gi|530548850|ref|YP_008429398.1| - 0.0099 15.8 0.0 0.014 15.3 0.0 1.4 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_30 PF13604.6 gi|530548850|ref|YP_008429398.1| - 0.014 15.1 0.0 0.024 14.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA PF00004.29 gi|530548850|ref|YP_008429398.1| - 0.017 15.5 0.2 0.11 13.0 0.2 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) NACHT PF05729.12 gi|530548850|ref|YP_008429398.1| - 0.025 14.5 0.0 0.043 13.7 0.0 1.3 1 0 0 1 1 1 0 NACHT domain Thymidylate_kin PF02223.17 gi|530548850|ref|YP_008429398.1| - 0.045 13.4 0.0 0.082 12.6 0.0 1.4 1 0 0 1 1 1 0 Thymidylate kinase TniB PF05621.11 gi|530548850|ref|YP_008429398.1| - 0.07 12.5 0.3 0.43 10.0 0.1 1.9 2 0 0 2 2 2 0 Bacterial TniB protein NB-ARC PF00931.22 gi|530548850|ref|YP_008429398.1| - 0.071 12.3 0.1 0.79 8.9 0.0 2.0 2 0 0 2 2 2 0 NB-ARC domain SbcCD_C PF13558.6 gi|530548850|ref|YP_008429398.1| - 0.077 13.2 0.0 0.69 10.2 0.0 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit Cytidylate_kin PF02224.18 gi|530548850|ref|YP_008429398.1| - 0.11 12.2 0.0 0.27 11.0 0.0 1.8 2 1 0 2 2 2 0 Cytidylate kinase ABC_ATPase PF09818.9 gi|530548850|ref|YP_008429398.1| - 0.13 11.0 0.9 4.1 6.1 0.1 2.6 2 1 0 2 2 2 0 Predicted ATPase of the ABC class MMR_HSR1 PF01926.23 gi|530548850|ref|YP_008429398.1| - 0.13 12.3 0.2 0.37 10.9 0.1 1.7 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_18 PF13238.6 gi|530548850|ref|YP_008429398.1| - 0.18 12.4 0.4 0.51 10.9 0.4 2.0 1 1 0 1 1 1 0 AAA domain VIT1 PF01988.19 gi|530548851|ref|YP_008429399.1| - 9.1e-49 166.2 4.9 1.4e-48 165.6 4.9 1.3 1 0 0 1 1 1 1 VIT family Rubrerythrin PF02915.17 gi|530548851|ref|YP_008429399.1| - 9.7e-06 26.0 3.3 9.7e-06 26.0 3.3 2.3 2 1 0 2 2 2 1 Rubrerythrin DUF1269 PF06897.12 gi|530548851|ref|YP_008429399.1| - 0.66 10.3 5.0 5.7 7.3 0.0 3.3 3 1 1 4 4 4 0 Protein of unknown function (DUF1269) Rrf2 PF02082.20 gi|530548852|ref|YP_008429400.1| - 7e-05 23.1 0.0 8e-05 22.9 0.0 1.1 1 0 0 1 1 1 1 Transcriptional regulator HTH_11 PF08279.12 gi|530548852|ref|YP_008429400.1| - 0.00028 20.8 0.0 0.00033 20.5 0.0 1.0 1 0 0 1 1 1 1 HTH domain TrmB PF01978.19 gi|530548852|ref|YP_008429400.1| - 0.00032 20.5 0.1 0.00037 20.3 0.1 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB TBPIP PF07106.13 gi|530548852|ref|YP_008429400.1| - 0.00049 20.0 0.1 0.00074 19.4 0.1 1.2 1 0 0 1 1 1 1 TBPIP/Hop2 winged helix domain z-alpha PF02295.17 gi|530548852|ref|YP_008429400.1| - 0.0024 17.9 0.2 0.0026 17.8 0.2 1.0 1 0 0 1 1 1 1 Adenosine deaminase z-alpha domain HTH_Crp_2 PF13545.6 gi|530548852|ref|YP_008429400.1| - 0.0025 17.8 0.0 0.0027 17.7 0.0 1.1 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_24 PF13412.6 gi|530548852|ref|YP_008429400.1| - 0.0027 17.2 0.1 0.0035 16.9 0.1 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HARE-HTH PF05066.13 gi|530548852|ref|YP_008429400.1| - 0.0045 17.3 0.2 0.0063 16.9 0.2 1.4 1 1 0 1 1 1 1 HB1, ASXL, restriction endonuclease HTH domain RNA_pol_Rpc34 PF05158.12 gi|530548852|ref|YP_008429400.1| - 0.0074 15.7 0.1 0.0079 15.6 0.1 1.0 1 0 0 1 1 1 1 RNA polymerase Rpc34 subunit FaeA PF04703.12 gi|530548852|ref|YP_008429400.1| - 0.0078 16.6 0.0 0.0087 16.4 0.0 1.1 1 0 0 1 1 1 1 FaeA-like protein SMC_ScpB PF04079.16 gi|530548852|ref|YP_008429400.1| - 0.0079 15.8 0.1 0.0091 15.6 0.1 1.0 1 0 0 1 1 1 1 Segregation and condensation complex subunit ScpB DUF2336 PF10098.9 gi|530548852|ref|YP_008429400.1| - 0.0088 15.6 0.0 0.0097 15.4 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein conserved in bacteria (DUF2336) TFIIE_alpha PF02002.17 gi|530548852|ref|YP_008429400.1| - 0.0096 15.8 0.1 0.01 15.7 0.1 1.1 1 0 0 1 1 1 1 TFIIE alpha subunit MarR PF01047.22 gi|530548852|ref|YP_008429400.1| - 0.012 15.6 0.0 0.013 15.4 0.0 1.1 1 0 0 1 1 1 0 MarR family HTH_IclR PF09339.10 gi|530548852|ref|YP_008429400.1| - 0.013 15.3 0.0 0.015 15.1 0.0 1.1 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|530548852|ref|YP_008429400.1| - 0.014 15.2 0.0 0.019 14.8 0.0 1.3 1 1 0 1 1 1 0 Bacterial regulatory protein, arsR family DUF3783 PF12646.7 gi|530548852|ref|YP_008429400.1| - 0.018 15.0 0.0 0.042 13.8 0.0 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF3783) MarR_2 PF12802.7 gi|530548852|ref|YP_008429400.1| - 0.02 14.8 0.0 0.024 14.5 0.0 1.1 1 0 0 1 1 1 0 MarR family TFIIE_beta PF02186.15 gi|530548852|ref|YP_008429400.1| - 0.027 14.8 0.0 0.029 14.6 0.0 1.1 1 0 0 1 1 1 0 TFIIE beta subunit core domain Phage_rep_O PF04492.13 gi|530548852|ref|YP_008429400.1| - 0.04 14.5 0.0 0.045 14.3 0.0 1.1 1 0 0 1 1 1 0 Bacteriophage replication protein O Phage_pRha PF09669.10 gi|530548852|ref|YP_008429400.1| - 0.045 14.3 0.0 0.051 14.1 0.0 1.1 1 0 0 1 1 1 0 Phage regulatory protein Rha (Phage_pRha) GntR PF00392.21 gi|530548852|ref|YP_008429400.1| - 0.047 13.3 0.0 0.054 13.2 0.0 1.1 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family Fe_dep_repress PF01325.19 gi|530548852|ref|YP_008429400.1| - 0.05 13.8 0.1 0.057 13.6 0.1 1.1 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HrcA_DNA-bdg PF03444.15 gi|530548852|ref|YP_008429400.1| - 0.052 13.2 0.0 0.057 13.1 0.0 1.1 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_20 PF12840.7 gi|530548852|ref|YP_008429400.1| - 0.054 13.6 0.0 0.076 13.1 0.0 1.3 1 1 0 1 1 1 0 Helix-turn-helix domain Sigma70_r3 PF04539.16 gi|530548852|ref|YP_008429400.1| - 0.07 13.2 0.1 0.086 13.0 0.1 1.3 1 0 0 1 1 1 0 Sigma-70 region 3 RHH_6 PF16762.5 gi|530548853|ref|YP_008429401.1| - 0.0015 19.1 0.0 0.0017 18.9 0.0 1.0 1 0 0 1 1 1 1 Ribbon-helix-helix domain VapB_antitoxin PF09957.9 gi|530548853|ref|YP_008429401.1| - 0.021 14.7 2.4 0.26 11.2 2.4 2.0 1 1 0 1 1 1 0 Bacterial antitoxin of type II TA system, VapB PG_binding_2 PF08823.11 gi|530548853|ref|YP_008429401.1| - 0.09 13.1 0.0 0.11 12.9 0.0 1.2 1 0 0 1 1 1 0 Putative peptidoglycan binding domain OrfB_Zn_ribbon PF07282.11 gi|530548854|ref|YP_008429402.1| - 6.9e-25 86.8 0.3 2.2e-24 85.2 0.0 2.0 2 0 0 2 2 2 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|530548854|ref|YP_008429402.1| - 3.8e-06 27.1 0.2 3.8e-06 27.1 0.2 2.0 2 1 0 2 2 2 1 Probable transposase C1_1 PF00130.22 gi|530548854|ref|YP_008429402.1| - 0.0068 16.3 0.1 0.013 15.4 0.1 1.4 1 0 0 1 1 1 1 Phorbol esters/diacylglycerol binding domain (C1 domain) Baculo_ME53 PF06061.11 gi|530548854|ref|YP_008429402.1| - 0.0083 15.4 0.0 0.015 14.5 0.0 1.4 1 0 0 1 1 1 1 Baculoviridae ME53 DZR PF12773.7 gi|530548854|ref|YP_008429402.1| - 0.028 14.4 0.5 0.05 13.6 0.5 1.3 1 0 0 1 1 1 0 Double zinc ribbon zf_Rg PF17915.1 gi|530548854|ref|YP_008429402.1| - 0.16 11.4 0.9 0.36 10.3 0.9 1.5 1 0 0 1 1 1 0 Reverse gyrase zinc finger Prok-RING_1 PF14446.6 gi|530548854|ref|YP_008429402.1| - 0.17 11.8 0.3 0.3 11.0 0.3 1.4 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 Vps36-NZF-N PF16988.5 gi|530548854|ref|YP_008429402.1| - 0.23 10.9 0.3 0.77 9.2 0.3 1.9 1 1 0 1 1 1 0 Vacuolar protein sorting 36 NZF-N zinc-finger domain zf-Mss51 PF13824.6 gi|530548854|ref|YP_008429402.1| - 0.3 11.2 1.2 0.65 10.1 1.2 1.6 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-NADH-PPase PF09297.11 gi|530548854|ref|YP_008429402.1| - 0.33 10.7 1.6 0.66 9.7 1.6 1.5 1 0 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain Rad50_zn_hook PF04423.14 gi|530548854|ref|YP_008429402.1| - 2.1 8.2 4.4 4 7.3 0.1 2.8 2 1 0 2 2 2 0 Rad50 zinc hook motif Methyltransf_10 PF05971.12 gi|530548855|ref|YP_008429403.1| - 4.1e-10 39.5 0.0 1.5e-09 37.6 0.0 1.8 1 1 0 1 1 1 1 RNA methyltransferase Methyltransf_31 PF13847.6 gi|530548855|ref|YP_008429403.1| - 1.7e-08 34.4 0.0 2.6e-08 33.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|530548855|ref|YP_008429403.1| - 2.9e-08 33.5 0.0 3.9e-08 33.0 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_25 PF13649.6 gi|530548855|ref|YP_008429403.1| - 4.3e-07 30.5 0.0 7.4e-07 29.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|530548855|ref|YP_008429403.1| - 1.1e-06 28.3 0.0 4.4e-06 26.3 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase small domain Methyltransf_12 PF08242.12 gi|530548855|ref|YP_008429403.1| - 0.00011 22.9 0.0 0.00019 22.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.7 gi|530548855|ref|YP_008429403.1| - 0.00012 22.1 0.0 0.00027 20.9 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|530548855|ref|YP_008429403.1| - 0.00034 20.3 0.0 0.00069 19.3 0.0 1.5 2 0 0 2 2 2 1 Conserved hypothetical protein 95 PCMT PF01135.19 gi|530548855|ref|YP_008429403.1| - 0.00045 20.0 0.0 0.00067 19.5 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_11 PF08241.12 gi|530548855|ref|YP_008429403.1| - 0.00046 20.8 0.0 0.0012 19.5 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 gi|530548855|ref|YP_008429403.1| - 0.004 16.2 0.0 0.0057 15.8 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_16 PF10294.9 gi|530548855|ref|YP_008429403.1| - 0.0079 16.0 0.0 0.011 15.5 0.0 1.2 1 0 0 1 1 1 1 Lysine methyltransferase Methyltransf_4 PF02390.17 gi|530548855|ref|YP_008429403.1| - 0.015 14.8 0.0 0.025 14.1 0.0 1.3 1 0 0 1 1 1 0 Putative methyltransferase Methyltransf_23 PF13489.6 gi|530548855|ref|YP_008429403.1| - 0.03 14.2 0.0 0.056 13.3 0.0 1.4 2 0 0 2 2 2 0 Methyltransferase domain CMAS PF02353.20 gi|530548855|ref|YP_008429403.1| - 0.033 13.5 0.0 0.047 13.0 0.0 1.1 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Methyltrans_SAM PF10672.9 gi|530548856|ref|YP_008429404.1| - 8.1e-22 77.7 0.0 1.2e-21 77.2 0.0 1.2 1 0 0 1 1 1 1 S-adenosylmethionine-dependent methyltransferase Met_10 PF02475.16 gi|530548856|ref|YP_008429404.1| - 4.4e-20 72.3 0.2 7.2e-20 71.6 0.2 1.3 1 0 0 1 1 1 1 Met-10+ like-protein PUA_3 PF17785.1 gi|530548856|ref|YP_008429404.1| - 3e-17 62.2 0.1 6.4e-17 61.1 0.1 1.6 1 0 0 1 1 1 1 PUA-like domain Methyltransf_31 PF13847.6 gi|530548856|ref|YP_008429404.1| - 1.4e-15 57.4 0.1 2.6e-15 56.5 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain PUA PF01472.20 gi|530548856|ref|YP_008429404.1| - 1.7e-14 53.5 0.3 4.1e-14 52.3 0.3 1.7 1 0 0 1 1 1 1 PUA domain Cons_hypoth95 PF03602.15 gi|530548856|ref|YP_008429404.1| - 3.2e-14 53.0 0.0 7.1e-14 51.9 0.0 1.6 1 0 0 1 1 1 1 Conserved hypothetical protein 95 PrmA PF06325.13 gi|530548856|ref|YP_008429404.1| - 3.3e-13 49.7 0.2 5.5e-13 49.0 0.2 1.3 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_15 PF09445.10 gi|530548856|ref|YP_008429404.1| - 3e-12 46.4 0.0 5e-12 45.7 0.0 1.4 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_25 PF13649.6 gi|530548856|ref|YP_008429404.1| - 2.4e-10 41.0 0.0 5.3e-10 39.9 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_3 PF01596.17 gi|530548856|ref|YP_008429404.1| - 6.9e-10 38.5 0.7 1.4e-09 37.4 0.7 1.6 1 0 0 1 1 1 1 O-methyltransferase TRM PF02005.16 gi|530548856|ref|YP_008429404.1| - 1.8e-07 30.7 0.0 2.4e-07 30.3 0.0 1.2 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase MTS PF05175.14 gi|530548856|ref|YP_008429404.1| - 1.7e-06 27.7 0.1 2.9e-06 26.9 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase small domain UPF0020 PF01170.18 gi|530548856|ref|YP_008429404.1| - 2.3e-06 27.4 0.1 9.5e-05 22.2 0.0 2.7 2 1 0 2 2 2 1 Putative RNA methylase family UPF0020 Methyltransf_18 PF12847.7 gi|530548856|ref|YP_008429404.1| - 3.7e-06 27.0 0.0 7.4e-06 26.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|530548856|ref|YP_008429404.1| - 5.5e-05 23.7 0.0 0.00014 22.4 0.0 1.8 1 0 0 1 1 1 1 Methyltransferase domain Methyltr_RsmB-F PF01189.17 gi|530548856|ref|YP_008429404.1| - 0.00041 20.1 0.0 0.016 14.9 0.0 2.3 1 1 0 1 1 1 1 16S rRNA methyltransferase RsmB/F FtsJ PF01728.19 gi|530548856|ref|YP_008429404.1| - 0.0011 19.2 0.1 0.0021 18.2 0.1 1.4 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_24 PF13578.6 gi|530548856|ref|YP_008429404.1| - 0.0022 19.0 0.0 0.0053 17.8 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|530548856|ref|YP_008429404.1| - 0.0044 16.9 0.0 0.0076 16.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain UPF0113 PF03657.13 gi|530548856|ref|YP_008429404.1| - 0.034 14.4 0.1 0.13 12.5 0.1 2.1 1 1 0 1 1 1 0 UPF0113 PUA domain ADH_zinc_N PF00107.26 gi|530548856|ref|YP_008429404.1| - 0.039 13.9 0.5 0.11 12.5 0.2 2.0 2 0 0 2 2 2 0 Zinc-binding dehydrogenase TypeIII_RM_meth PF12564.8 gi|530548857|ref|YP_008429405.1| - 0.1 12.7 0.7 0.22 11.7 0.7 1.5 1 0 0 1 1 1 0 Type III restriction/modification enzyme methylation subunit TctA PF01970.16 gi|530548858|ref|YP_008429406.1| - 5.2e-43 147.3 35.3 7.3e-43 146.8 35.3 1.2 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter TctA family Rep_fac-A_3 PF08661.11 gi|530548859|ref|YP_008429407.1| - 0.034 14.5 0.1 17 5.8 0.0 3.3 2 1 1 3 3 3 0 Replication factor A protein 3 ATPase PF06745.13 gi|530548860|ref|YP_008429408.1| - 2.2e-30 105.7 0.0 3.8e-30 104.9 0.0 1.4 1 1 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|530548860|ref|YP_008429408.1| - 2e-05 24.3 0.0 9.1e-05 22.1 0.0 1.9 2 0 0 2 2 2 1 AAA domain PAXNEB PF05625.11 gi|530548860|ref|YP_008429408.1| - 0.0004 19.6 0.1 0.0022 17.2 0.0 1.8 2 0 0 2 2 2 1 PAXNEB protein Roc PF08477.13 gi|530548860|ref|YP_008429408.1| - 0.0006 20.0 0.1 0.011 15.9 0.0 2.2 2 0 0 2 2 2 1 Ras of Complex, Roc, domain of DAPkinase AAA_24 PF13479.6 gi|530548860|ref|YP_008429408.1| - 0.0025 17.6 0.3 0.037 13.7 0.0 2.1 2 0 0 2 2 2 1 AAA domain RecA PF00154.21 gi|530548860|ref|YP_008429408.1| - 0.017 14.6 0.1 0.032 13.7 0.1 1.4 1 0 0 1 1 1 0 recA bacterial DNA recombination protein Rad51 PF08423.11 gi|530548860|ref|YP_008429408.1| - 0.017 14.4 0.1 0.04 13.2 0.0 1.6 2 0 0 2 2 2 0 Rad51 AAA_14 PF13173.6 gi|530548860|ref|YP_008429408.1| - 0.083 12.9 0.1 0.17 11.9 0.0 1.7 2 0 0 2 2 2 0 AAA domain G-alpha PF00503.20 gi|530548860|ref|YP_008429408.1| - 0.091 11.9 0.4 0.38 9.9 0.0 1.9 2 1 0 2 2 2 0 G-protein alpha subunit FtsK_SpoIIIE PF01580.18 gi|530548860|ref|YP_008429408.1| - 0.11 11.9 0.1 0.95 8.8 0.0 2.1 2 0 0 2 2 2 0 FtsK/SpoIIIE family AAA_29 PF13555.6 gi|530548860|ref|YP_008429408.1| - 0.16 11.7 0.0 0.47 10.2 0.1 1.7 2 0 0 2 2 2 0 P-loop containing region of AAA domain ATPase PF06745.13 gi|530548861|ref|YP_008429409.1| - 2.2e-79 266.0 0.2 2.5e-79 265.9 0.2 1.0 1 0 0 1 1 1 1 KaiC GvpD PF07088.11 gi|530548861|ref|YP_008429409.1| - 1.3e-10 40.6 0.5 2.3e-10 39.7 0.5 1.3 1 1 0 1 1 1 1 GvpD gas vesicle protein AAA_25 PF13481.6 gi|530548861|ref|YP_008429409.1| - 7.2e-09 35.5 0.0 9.9e-09 35.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain Sigma54_activat PF00158.26 gi|530548861|ref|YP_008429409.1| - 0.00058 19.6 0.0 0.001 18.8 0.0 1.3 1 0 0 1 1 1 1 Sigma-54 interaction domain AAA_19 PF13245.6 gi|530548861|ref|YP_008429409.1| - 0.0018 18.6 0.1 0.0026 18.1 0.1 1.3 1 1 0 1 1 1 1 AAA domain T2SSE PF00437.20 gi|530548861|ref|YP_008429409.1| - 0.0031 16.6 0.1 0.0049 16.0 0.1 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_14 PF13173.6 gi|530548861|ref|YP_008429409.1| - 0.0045 17.0 0.0 0.0073 16.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain DnaB_C PF03796.15 gi|530548861|ref|YP_008429409.1| - 0.0049 16.2 0.0 0.0093 15.3 0.0 1.4 1 0 0 1 1 1 1 DnaB-like helicase C terminal domain AAA_16 PF13191.6 gi|530548861|ref|YP_008429409.1| - 0.0064 16.9 0.0 0.012 16.0 0.0 1.3 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|530548861|ref|YP_008429409.1| - 0.0064 16.8 0.2 0.011 16.0 0.2 1.5 1 1 0 1 1 1 1 AAA domain ResIII PF04851.15 gi|530548861|ref|YP_008429409.1| - 0.0069 16.4 0.0 0.0091 16.0 0.0 1.3 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_7 PF12775.7 gi|530548861|ref|YP_008429409.1| - 0.0082 15.7 0.1 0.013 15.1 0.1 1.2 1 0 0 1 1 1 1 P-loop containing dynein motor region AAA_24 PF13479.6 gi|530548861|ref|YP_008429409.1| - 0.014 15.2 0.0 0.016 14.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|530548861|ref|YP_008429409.1| - 0.014 15.3 0.2 0.023 14.6 0.2 1.8 1 1 0 1 1 1 0 NACHT domain AAA_29 PF13555.6 gi|530548861|ref|YP_008429409.1| - 0.018 14.8 0.2 0.04 13.7 0.2 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_30 PF13604.6 gi|530548861|ref|YP_008429409.1| - 0.036 13.8 0.0 0.054 13.2 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|530548861|ref|YP_008429409.1| - 0.037 14.2 0.1 0.055 13.6 0.1 1.4 1 1 0 1 1 1 0 AAA domain cobW PF02492.19 gi|530548861|ref|YP_008429409.1| - 0.052 13.1 0.1 0.11 12.1 0.1 1.5 2 0 0 2 2 1 0 CobW/HypB/UreG, nucleotide-binding domain TrwB_AAD_bind PF10412.9 gi|530548861|ref|YP_008429409.1| - 0.055 12.4 0.1 0.087 11.7 0.1 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_18 PF13238.6 gi|530548861|ref|YP_008429409.1| - 0.062 13.9 0.4 0.19 12.3 0.4 1.8 1 1 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 gi|530548861|ref|YP_008429409.1| - 0.069 13.0 0.9 0.13 12.2 0.8 1.5 1 1 0 1 1 1 0 NTPase DEAD PF00270.29 gi|530548861|ref|YP_008429409.1| - 0.075 12.8 0.0 0.11 12.3 0.0 1.3 1 0 0 1 1 1 0 DEAD/DEAH box helicase TsaE PF02367.17 gi|530548861|ref|YP_008429409.1| - 0.1 12.6 0.1 0.4 10.7 0.1 1.9 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_28 PF13521.6 gi|530548861|ref|YP_008429409.1| - 0.1 12.8 0.1 0.18 12.1 0.1 1.4 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.27 gi|530548861|ref|YP_008429409.1| - 0.13 12.8 0.0 0.21 12.1 0.0 1.4 1 0 0 1 1 1 0 ABC transporter FtsK_SpoIIIE PF01580.18 gi|530548861|ref|YP_008429409.1| - 0.17 11.3 0.1 0.28 10.5 0.1 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_23 PF13476.6 gi|530548861|ref|YP_008429409.1| - 0.35 11.3 2.1 0.81 10.2 2.1 1.5 1 0 0 1 1 1 0 AAA domain DNA_primase_lrg PF04104.14 gi|530548862|ref|YP_008429410.1| - 3.5e-31 108.6 0.0 1.1e-30 106.9 0.0 1.6 1 1 0 1 1 1 1 Eukaryotic and archaeal DNA primase, large subunit Lipoprotein_3 PF00938.17 gi|530548862|ref|YP_008429410.1| - 0.0064 16.6 0.1 0.015 15.5 0.1 1.5 1 0 0 1 1 1 1 Lipoprotein DNA_primase_S PF01896.19 gi|530548863|ref|YP_008429411.1| - 4.5e-16 59.4 0.1 4.5e-15 56.1 0.0 2.2 2 1 0 2 2 2 1 DNA primase small subunit EamA PF00892.20 gi|530548864|ref|YP_008429412.1| - 3.6e-37 127.6 39.1 1e-18 67.8 13.7 2.0 2 0 0 2 2 2 2 EamA-like transporter family SirB PF04247.12 gi|530548864|ref|YP_008429412.1| - 4.6 7.4 16.7 0.18 11.9 9.4 2.3 1 1 2 3 3 3 0 Invasion gene expression up-regulator, SirB DUF2157 PF09925.9 gi|530548864|ref|YP_008429412.1| - 6.6 6.5 18.1 40 4.0 15.4 3.0 1 1 1 2 2 2 0 Predicted membrane protein (DUF2157) BatD PF13584.6 gi|530548865|ref|YP_008429413.1| - 0.017 13.9 0.0 0.056 12.2 0.0 1.8 2 0 0 2 2 2 0 Oxygen tolerance Alph_Pro_TM PF09608.10 gi|530548865|ref|YP_008429413.1| - 0.022 14.6 0.1 0.066 13.0 0.0 1.9 3 0 0 3 3 3 0 Putative transmembrane protein (Alph_Pro_TM) DUF4625 PF15418.6 gi|530548865|ref|YP_008429413.1| - 0.023 15.0 0.0 0.74 10.1 0.0 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4625) Plasmodium_Vir PF05795.11 gi|530548865|ref|YP_008429413.1| - 0.039 13.4 0.3 0.056 12.9 0.3 1.2 1 0 0 1 1 1 0 Plasmodium vivax Vir protein DUF3324 PF11797.8 gi|530548865|ref|YP_008429413.1| - 0.078 12.9 0.4 9.6 6.2 0.0 3.4 4 0 0 4 4 4 0 Protein of unknown function C-terminal (DUF3324) Glyco_hydro_2 PF00703.21 gi|530548865|ref|YP_008429413.1| - 0.083 13.6 0.1 7.2 7.3 0.0 3.2 2 1 1 3 3 3 0 Glycosyl hydrolases family 2 MFS_1 PF07690.16 gi|530548865|ref|YP_008429413.1| - 0.088 11.7 0.0 0.15 11.0 0.0 1.3 1 0 0 1 1 1 0 Major Facilitator Superfamily SR-25 PF10500.9 gi|530548865|ref|YP_008429413.1| - 0.16 11.5 5.8 0.27 10.8 5.8 1.2 1 0 0 1 1 1 0 Nuclear RNA-splicing-associated protein RseC_MucC PF04246.12 gi|530548866|ref|YP_008429414.1| - 1.9 8.5 8.0 0.53 10.2 5.3 1.5 1 1 1 2 2 2 0 Positive regulator of sigma(E), RseC/MucC DUF61 PF01886.16 gi|564287485|ref|YP_008429415.3| - 2.7e-37 127.6 1.1 3e-37 127.5 1.1 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF61 Gln-synt_C PF00120.24 gi|530548868|ref|YP_008429416.1| - 1.1e-125 419.2 0.0 1.3e-125 419.0 0.0 1.1 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.19 gi|530548868|ref|YP_008429416.1| - 2.2e-20 72.2 0.1 5.3e-20 70.9 0.0 1.7 2 0 0 2 2 2 1 Glutamine synthetase, beta-Grasp domain Gln-synt_N_2 PF16952.5 gi|530548868|ref|YP_008429416.1| - 0.033 14.0 0.0 0.088 12.6 0.0 1.8 1 1 0 1 1 1 0 Glutamine synthetase N-terminal domain EamA PF00892.20 gi|530548869|ref|YP_008429417.1| - 2.6e-50 170.2 41.7 4.9e-26 91.5 11.9 2.0 2 0 0 2 2 2 2 EamA-like transporter family TPT PF03151.16 gi|530548869|ref|YP_008429417.1| - 1.2e-07 31.4 16.1 0.001 18.5 7.0 2.1 1 1 1 2 2 2 2 Triose-phosphate Transporter family TMEM234 PF10639.9 gi|530548869|ref|YP_008429417.1| - 2.6e-05 24.2 12.1 0.0022 18.0 0.5 2.7 2 1 1 3 3 3 2 Putative transmembrane family 234 PUNUT PF16913.5 gi|530548869|ref|YP_008429417.1| - 0.0047 16.2 18.5 0.032 13.4 0.3 2.7 2 1 0 2 2 2 2 Purine nucleobase transmembrane transport UAA PF08449.11 gi|530548869|ref|YP_008429417.1| - 0.078 12.2 20.3 3.8 6.6 20.3 2.5 1 1 0 1 1 1 0 UAA transporter family IspA PF04279.15 gi|530548869|ref|YP_008429417.1| - 0.2 11.8 14.2 0.18 12.0 1.5 2.5 2 0 0 2 2 2 0 Intracellular septation protein A SLC35F PF06027.12 gi|530548869|ref|YP_008429417.1| - 3.9 6.9 21.1 0.26 10.8 12.6 2.5 2 1 0 2 2 2 0 Solute carrier family 35 NAD_synthase PF02540.17 gi|530548870|ref|YP_008429418.1| - 1.5e-91 305.9 0.1 1.6e-91 305.7 0.1 1.0 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.16 gi|530548870|ref|YP_008429418.1| - 5.6e-08 32.0 0.5 3.2e-05 22.9 0.2 3.3 3 1 0 3 3 3 1 tRNA methyl transferase QueC PF06508.13 gi|530548870|ref|YP_008429418.1| - 6.6e-08 32.3 0.1 0.00012 21.6 0.0 2.3 2 0 0 2 2 2 2 Queuosine biosynthesis protein QueC Asn_synthase PF00733.21 gi|530548870|ref|YP_008429418.1| - 0.00014 21.6 0.0 0.00016 21.5 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase ATP_bind_3 PF01171.20 gi|530548870|ref|YP_008429418.1| - 0.013 15.3 0.0 0.048 13.4 0.0 1.9 1 1 0 1 1 1 0 PP-loop family PAPS_reduct PF01507.19 gi|530548870|ref|YP_008429418.1| - 0.032 14.3 0.9 3.2 7.8 0.0 2.7 3 0 0 3 3 3 0 Phosphoadenosine phosphosulfate reductase family HTH_23 PF13384.6 gi|530548870|ref|YP_008429418.1| - 0.062 13.1 0.0 15 5.6 0.0 3.0 3 1 0 3 3 3 0 Homeodomain-like domain ThiI PF02568.14 gi|530548870|ref|YP_008429418.1| - 0.064 12.8 0.1 8.4 5.9 0.0 2.3 2 0 0 2 2 2 0 Thiamine biosynthesis protein (ThiI) ABC_tran PF00005.27 gi|530548872|ref|YP_008429420.1| - 1.9e-32 112.6 0.0 2.5e-32 112.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|530548872|ref|YP_008429420.1| - 1.1e-18 67.4 0.1 2.3e-18 66.5 0.1 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|530548872|ref|YP_008429420.1| - 0.0024 17.8 0.1 0.059 13.2 0.0 2.1 1 1 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|530548872|ref|YP_008429420.1| - 0.0028 17.9 0.4 0.0087 16.3 0.4 1.9 1 1 0 1 1 1 1 AAA domain SRP54 PF00448.22 gi|530548872|ref|YP_008429420.1| - 0.0036 17.0 0.0 0.017 14.7 0.0 2.0 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain AAA PF00004.29 gi|530548872|ref|YP_008429420.1| - 0.0038 17.7 0.0 0.0079 16.6 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) SMC_N PF02463.19 gi|530548872|ref|YP_008429420.1| - 0.0056 16.1 0.0 0.024 14.1 0.0 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain PRK PF00485.18 gi|530548872|ref|YP_008429420.1| - 0.023 14.4 0.0 0.036 13.8 0.0 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family Rad17 PF03215.15 gi|530548872|ref|YP_008429420.1| - 0.053 13.4 0.0 0.076 12.9 0.0 1.2 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_16 PF13191.6 gi|530548872|ref|YP_008429420.1| - 0.081 13.3 0.0 0.14 12.5 0.0 1.5 2 0 0 2 2 1 0 AAA ATPase domain RNA_helicase PF00910.22 gi|530548872|ref|YP_008429420.1| - 0.093 13.1 0.0 0.18 12.2 0.0 1.5 1 0 0 1 1 1 0 RNA helicase ATPase PF06745.13 gi|530548872|ref|YP_008429420.1| - 0.11 11.8 0.2 5.5 6.3 0.1 2.3 2 0 0 2 2 2 0 KaiC Mg_chelatase PF01078.21 gi|530548872|ref|YP_008429420.1| - 0.12 11.8 0.0 0.21 11.0 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_25 PF13481.6 gi|530548872|ref|YP_008429420.1| - 0.19 11.3 0.1 3.9 7.0 0.0 2.9 4 0 0 4 4 4 0 AAA domain AAA_13 PF13166.6 gi|530548872|ref|YP_008429420.1| - 0.24 10.0 0.0 2.2 6.8 0.0 1.9 2 0 0 2 2 2 0 AAA domain ABC_tran PF00005.27 gi|530548873|ref|YP_008429421.1| - 1e-28 100.6 0.0 1.4e-28 100.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|530548873|ref|YP_008429421.1| - 1.6e-20 73.3 0.6 2.7e-20 72.7 0.6 1.3 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|530548873|ref|YP_008429421.1| - 5.8e-06 26.3 0.1 0.00011 22.1 0.0 2.1 2 0 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system RsgA_GTPase PF03193.16 gi|530548873|ref|YP_008429421.1| - 0.0083 16.0 0.0 0.02 14.8 0.0 1.6 1 0 0 1 1 1 1 RsgA GTPase DnaB_C PF03796.15 gi|530548873|ref|YP_008429421.1| - 0.22 10.8 0.1 6.8 5.9 0.0 2.1 2 0 0 2 2 2 0 DnaB-like helicase C terminal domain BPD_transp_1 PF00528.22 gi|530548874|ref|YP_008429422.1| - 2.9e-26 92.3 16.2 2.9e-26 92.3 16.2 1.6 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|530548874|ref|YP_008429422.1| - 3.4e-07 30.1 0.1 3.4e-07 30.1 0.1 3.2 3 0 0 3 3 3 1 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.22 gi|530548875|ref|YP_008429423.1| - 2e-38 132.0 15.8 2e-38 132.0 15.8 1.8 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_5 PF00496.22 gi|564287486|ref|YP_008429424.3| - 4.9e-17 62.0 9.8 8.3e-10 38.2 1.8 2.6 2 1 0 2 2 2 2 Bacterial extracellular solute-binding proteins, family 5 Middle FlgD_ig PF13860.6 gi|564287486|ref|YP_008429424.3| - 0.0004 20.2 0.2 0.0011 18.8 0.2 1.7 1 0 0 1 1 1 1 FlgD Ig-like domain MG2 PF01835.19 gi|564287486|ref|YP_008429424.3| - 0.16 12.4 0.0 0.64 10.5 0.0 2.0 1 0 0 1 1 1 0 MG2 domain VGPC1_C PF16799.5 gi|530548878|ref|YP_008429426.1| - 0.18 11.8 3.0 0.14 12.2 1.0 1.8 2 0 0 2 2 2 0 C-terminal membrane-localisation domain of ion-channel, VCN1 EF1_GNE PF00736.19 gi|530548879|ref|YP_008429427.1| - 5.1e-16 58.6 0.0 6.2e-16 58.4 0.0 1.1 1 0 0 1 1 1 1 EF-1 guanine nucleotide exchange domain DUF4777 PF16007.5 gi|530548879|ref|YP_008429427.1| - 0.031 14.5 0.1 0.74 10.1 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4777) TPR_12 PF13424.6 gi|530548881|ref|YP_008429429.1| - 1.4e-21 76.6 23.7 1e-10 41.7 2.7 4.4 2 1 3 5 5 5 4 Tetratricopeptide repeat TPR_7 PF13176.6 gi|530548881|ref|YP_008429429.1| - 7.5e-13 47.5 9.0 1.1e-05 25.2 0.1 5.3 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_14 PF13428.6 gi|530548881|ref|YP_008429429.1| - 8e-13 48.1 14.4 0.0026 18.4 0.1 6.6 5 2 1 7 7 6 3 Tetratricopeptide repeat TPR_6 PF13174.6 gi|530548881|ref|YP_008429429.1| - 1.2e-11 44.4 6.6 8.6e-05 22.9 0.0 5.8 5 1 1 6 6 4 1 Tetratricopeptide repeat TPR_19 PF14559.6 gi|530548881|ref|YP_008429429.1| - 6e-10 39.5 11.8 4.9e-05 23.8 0.2 4.5 2 1 3 5 5 4 2 Tetratricopeptide repeat TPR_8 PF13181.6 gi|530548881|ref|YP_008429429.1| - 6.8e-10 38.4 24.2 4.5e-05 23.3 0.2 6.5 7 0 0 7 7 5 3 Tetratricopeptide repeat TPR_2 PF07719.17 gi|530548881|ref|YP_008429429.1| - 1.4e-09 37.3 25.1 0.00019 21.3 0.6 6.4 7 0 0 7 7 4 4 Tetratricopeptide repeat TPR_1 PF00515.28 gi|530548881|ref|YP_008429429.1| - 5.4e-08 32.3 19.4 9.1e-05 22.1 0.3 6.4 6 1 0 6 6 5 2 Tetratricopeptide repeat TPR_16 PF13432.6 gi|530548881|ref|YP_008429429.1| - 1.7e-07 31.7 4.6 0.00014 22.4 0.4 3.0 2 1 1 3 3 3 3 Tetratricopeptide repeat TPR_10 PF13374.6 gi|530548881|ref|YP_008429429.1| - 2.1e-06 27.4 5.2 0.057 13.3 0.0 5.0 4 1 0 5 5 5 2 Tetratricopeptide repeat SNAP PF14938.6 gi|530548881|ref|YP_008429429.1| - 2.6e-06 27.1 5.2 2.6e-06 27.1 5.2 2.3 1 1 1 2 2 2 1 Soluble NSF attachment protein, SNAP TPR_MalT PF17874.1 gi|530548881|ref|YP_008429429.1| - 4.7e-05 22.9 1.8 0.02 14.3 0.1 2.3 1 1 0 2 2 2 1 MalT-like TPR region TPR_17 PF13431.6 gi|530548881|ref|YP_008429429.1| - 9.4e-05 22.5 3.5 0.42 11.1 0.1 4.5 4 0 0 4 4 3 1 Tetratricopeptide repeat RPN7 PF10602.9 gi|530548881|ref|YP_008429429.1| - 0.0001 22.1 16.1 0.013 15.3 0.3 4.0 2 1 2 4 4 4 2 26S proteasome subunit RPN7 ANAPC5 PF12862.7 gi|530548881|ref|YP_008429429.1| - 0.00047 20.2 12.7 0.1 12.7 0.0 3.9 2 2 1 3 3 3 2 Anaphase-promoting complex subunit 5 TPR_4 PF07721.14 gi|530548881|ref|YP_008429429.1| - 0.00072 20.0 0.0 0.82 10.5 0.0 3.5 3 0 0 3 3 3 1 Tetratricopeptide repeat LppC PF04348.13 gi|530548881|ref|YP_008429429.1| - 0.0019 17.1 0.1 0.0075 15.1 0.1 1.9 1 1 1 2 2 2 1 LppC putative lipoprotein ANAPC3 PF12895.7 gi|530548881|ref|YP_008429429.1| - 0.0036 17.5 0.2 0.0036 17.5 0.2 3.8 2 1 2 4 4 4 1 Anaphase-promoting complex, cyclosome, subunit 3 Sec5 PF15469.6 gi|530548881|ref|YP_008429429.1| - 0.004 17.0 10.7 1.2 9.0 1.7 3.4 1 1 2 3 3 3 2 Exocyst complex component Sec5 PPR PF01535.20 gi|530548881|ref|YP_008429429.1| - 0.0044 17.2 12.0 2.1 8.8 0.0 5.9 5 1 1 6 6 5 1 PPR repeat TPR_21 PF09976.9 gi|530548881|ref|YP_008429429.1| - 0.0073 16.0 1.1 0.0073 16.0 1.1 3.1 2 1 1 3 3 3 1 Tetratricopeptide repeat-like domain DUF3856 PF12968.7 gi|530548881|ref|YP_008429429.1| - 0.0077 16.3 8.5 0.008 16.2 0.2 3.6 2 2 1 3 3 3 1 Domain of Unknown Function (DUF3856) DUF948 PF06103.11 gi|530548881|ref|YP_008429429.1| - 0.011 15.9 0.2 8.2 6.8 0.0 2.8 3 0 0 3 3 2 0 Bacterial protein of unknown function (DUF948) MIT PF04212.18 gi|530548881|ref|YP_008429429.1| - 0.014 15.5 1.1 0.014 15.5 1.1 4.8 4 3 1 6 6 5 0 MIT (microtubule interacting and transport) domain ATP13 PF12921.7 gi|530548881|ref|YP_008429429.1| - 0.023 14.5 0.0 0.37 10.7 0.0 2.6 1 1 1 2 2 2 0 Mitochondrial ATPase expression Syntaxin_2 PF14523.6 gi|530548881|ref|YP_008429429.1| - 0.037 14.4 3.3 5 7.5 0.1 3.5 3 1 0 3 3 3 0 Syntaxin-like protein Occludin_ELL PF07303.13 gi|530548881|ref|YP_008429429.1| - 0.048 14.4 2.8 0.048 14.4 2.8 4.1 3 1 1 4 4 3 0 Occludin homology domain MINDY_DUB PF04424.13 gi|530548881|ref|YP_008429429.1| - 0.056 13.5 0.7 0.91 9.6 0.1 2.6 2 0 0 2 2 2 0 MINDY deubiquitinase DXP_synthase_N PF13292.6 gi|530548881|ref|YP_008429429.1| - 0.071 12.3 1.2 0.21 10.8 0.2 2.1 2 0 0 2 2 2 0 1-deoxy-D-xylulose-5-phosphate synthase Fib_alpha PF08702.10 gi|530548881|ref|YP_008429429.1| - 0.16 12.2 3.0 7.7 6.7 0.5 2.6 2 0 0 2 2 2 0 Fibrinogen alpha/beta chain family DHR10 PF18595.1 gi|530548881|ref|YP_008429429.1| - 0.19 11.8 23.2 0.036 14.1 4.3 3.5 3 1 0 3 3 3 0 Designed helical repeat protein 10 domain PAPS_reduct PF01507.19 gi|530548881|ref|YP_008429429.1| - 0.36 10.9 5.9 6.6 6.7 0.6 2.4 2 0 0 2 2 2 0 Phosphoadenosine phosphosulfate reductase family SPOB_a PF14689.6 gi|530548881|ref|YP_008429429.1| - 0.44 10.3 14.9 2.2 8.0 0.0 5.5 6 0 0 6 6 6 0 Sensor_kinase_SpoOB-type, alpha-helical domain Foie-gras_1 PF11817.8 gi|530548881|ref|YP_008429429.1| - 0.45 10.1 9.0 0.58 9.7 0.4 3.0 2 1 2 4 4 4 0 Foie gras liver health family 1 DUF2225 PF09986.9 gi|530548881|ref|YP_008429429.1| - 0.53 10.0 13.9 0.019 14.7 2.9 3.2 1 1 2 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2225) Tricorn_C1 PF14684.6 gi|530548881|ref|YP_008429429.1| - 0.93 9.6 7.3 2.2 8.4 0.1 3.7 3 1 1 4 4 4 0 Tricorn protease C1 domain GCP_N_terminal PF17681.1 gi|530548881|ref|YP_008429429.1| - 1.3 8.6 8.2 0.65 9.6 1.4 2.6 2 1 1 3 3 3 0 Gamma tubulin complex component N-terminal LOH1CR12 PF10158.9 gi|530548881|ref|YP_008429429.1| - 2.1 8.4 6.3 1.2 9.2 0.5 2.8 3 1 0 3 3 2 0 Tumour suppressor protein DUF2203 PF09969.9 gi|530548881|ref|YP_008429429.1| - 2.3 8.9 14.5 1.3 9.8 0.5 3.8 2 1 0 2 2 2 0 Uncharacterized conserved protein (DUF2203) DASH_Dam1 PF08653.10 gi|530548881|ref|YP_008429429.1| - 2.8 7.8 5.6 5.1 7.0 0.1 4.0 5 0 0 5 5 4 0 DASH complex subunit Dam1 Laminin_II PF06009.12 gi|530548881|ref|YP_008429429.1| - 3.3 7.7 5.7 29 4.7 0.2 3.2 2 1 1 3 3 3 0 Laminin Domain II Vps51 PF08700.11 gi|530548881|ref|YP_008429429.1| - 4 7.6 10.8 2.6 8.2 0.1 4.4 4 1 0 4 4 4 0 Vps51/Vps67 CTNNBL PF08216.11 gi|530548881|ref|YP_008429429.1| - 6.9 6.9 13.5 1.6 8.9 0.5 3.8 2 1 2 4 4 4 0 Catenin-beta-like, Arm-motif containing nuclear COMM_domain PF07258.14 gi|530548881|ref|YP_008429429.1| - 8 6.7 9.7 21 5.4 0.0 4.5 4 1 0 4 4 3 0 COMM domain Cpn60_TCP1 PF00118.24 gi|530548882|ref|YP_008429430.1| - 2e-188 627.0 25.9 2.3e-188 626.8 25.9 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family Phage_tube PF04985.14 gi|530548882|ref|YP_008429430.1| - 0.018 14.8 2.9 1.1 8.9 0.1 2.5 2 0 0 2 2 2 0 Phage tail tube protein FII AAA_5 PF07728.14 gi|530548882|ref|YP_008429430.1| - 0.061 13.3 0.2 0.2 11.6 0.0 2.0 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) ABC_tran PF00005.27 gi|530548883|ref|YP_008429431.1| - 6.8e-24 84.9 0.0 1.2e-23 84.1 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|530548883|ref|YP_008429431.1| - 1.1e-15 58.2 0.8 4e-07 30.1 0.1 2.3 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|530548883|ref|YP_008429431.1| - 9.9e-10 38.2 0.1 3e-05 23.6 0.0 2.8 3 0 0 3 3 3 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|530548883|ref|YP_008429431.1| - 9.4e-07 29.5 0.0 1.6e-06 28.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|530548883|ref|YP_008429431.1| - 0.0015 18.2 0.1 0.0028 17.4 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|530548883|ref|YP_008429431.1| - 0.0021 17.8 0.0 0.02 14.6 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|530548883|ref|YP_008429431.1| - 0.0048 17.2 0.0 0.0084 16.4 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|530548883|ref|YP_008429431.1| - 0.0052 17.2 0.0 0.0077 16.6 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_28 PF13521.6 gi|530548883|ref|YP_008429431.1| - 0.008 16.4 0.5 0.067 13.4 0.2 2.7 2 1 0 2 2 2 1 AAA domain AAA_30 PF13604.6 gi|530548883|ref|YP_008429431.1| - 0.01 15.6 0.0 0.017 14.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|530548883|ref|YP_008429431.1| - 0.017 15.0 0.0 0.03 14.2 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase MMR_HSR1 PF01926.23 gi|530548883|ref|YP_008429431.1| - 0.027 14.5 0.1 0.049 13.7 0.1 1.8 1 1 0 1 1 1 0 50S ribosome-binding GTPase IstB_IS21 PF01695.17 gi|530548883|ref|YP_008429431.1| - 0.034 13.9 0.1 3 7.5 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_27 PF13514.6 gi|530548883|ref|YP_008429431.1| - 0.077 12.6 0.0 0.18 11.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain MeaB PF03308.16 gi|530548883|ref|YP_008429431.1| - 0.11 11.4 0.0 0.15 11.0 0.0 1.2 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB Thymidylate_kin PF02223.17 gi|530548883|ref|YP_008429431.1| - 0.12 12.1 0.0 0.32 10.6 0.0 1.7 1 0 0 1 1 1 0 Thymidylate kinase MobB PF03205.14 gi|530548883|ref|YP_008429431.1| - 0.13 12.2 0.0 0.23 11.3 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_13 PF13166.6 gi|530548883|ref|YP_008429431.1| - 0.25 9.9 0.0 0.37 9.4 0.0 1.1 1 0 0 1 1 1 0 AAA domain DUF3584 PF12128.8 gi|530548883|ref|YP_008429431.1| - 0.32 8.5 0.1 0.42 8.1 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) AAA_18 PF13238.6 gi|530548883|ref|YP_008429431.1| - 0.9 10.1 3.2 0.33 11.5 0.6 2.0 2 1 0 2 2 1 0 AAA domain DUF5379 PF17350.2 gi|530548884|ref|YP_008429432.1| - 0.12 12.7 0.6 0.12 12.7 0.6 3.1 3 2 0 3 3 3 0 Family of unknown function (DUF5379) TYW3 PF02676.14 gi|530548885|ref|YP_008429433.1| - 1.5e-46 158.4 0.2 2e-46 158.0 0.2 1.1 1 0 0 1 1 1 1 Methyltransferase TYW3 Nas2_N PF18265.1 gi|530548885|ref|YP_008429433.1| - 0.046 13.6 0.1 0.62 10.0 0.0 2.4 2 0 0 2 2 2 0 Nas2 N_terminal domain Thioredoxin_3 PF13192.6 gi|530548886|ref|YP_008429434.1| - 1.3e-11 44.4 0.6 2.2e-11 43.6 0.1 1.6 2 0 0 2 2 2 1 Thioredoxin domain Glutaredoxin PF00462.24 gi|530548886|ref|YP_008429434.1| - 2e-06 27.9 0.0 5e-06 26.6 0.0 1.7 1 0 0 1 1 1 1 Glutaredoxin DSBA PF01323.20 gi|530548886|ref|YP_008429434.1| - 7.6e-05 22.6 0.1 0.056 13.2 0.0 2.3 1 1 1 2 2 2 2 DSBA-like thioredoxin domain Thioredoxin_4 PF13462.6 gi|530548886|ref|YP_008429434.1| - 0.00026 21.2 0.5 0.13 12.4 0.0 2.1 1 1 1 2 2 2 2 Thioredoxin Thioredoxin PF00085.20 gi|530548886|ref|YP_008429434.1| - 0.002 18.1 0.0 0.0023 17.9 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|530548886|ref|YP_008429434.1| - 0.037 14.5 0.5 0.72 10.3 0.5 2.2 1 1 0 1 1 1 0 Thioredoxin-like domain zf-HC3 PF16827.5 gi|530548886|ref|YP_008429434.1| - 0.069 13.4 0.1 0.12 12.6 0.1 1.4 1 0 0 1 1 1 0 zinc-finger DUF1223 PF06764.11 gi|530548886|ref|YP_008429434.1| - 0.17 11.9 0.0 1.3 9.0 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1223) SDF PF00375.18 gi|530548887|ref|YP_008429435.1| - 2.3e-23 82.8 3.9 2.7e-23 82.7 3.9 1.0 1 0 0 1 1 1 1 Sodium:dicarboxylate symporter family TPPK_C PF12555.8 gi|530548887|ref|YP_008429435.1| - 0.032 14.3 2.0 0.41 10.7 0.9 2.4 2 0 0 2 2 2 0 Thiamine pyrophosphokinase C terminal SpoIIM PF01944.17 gi|530548887|ref|YP_008429435.1| - 0.23 11.5 8.9 0.4 10.7 8.9 1.3 1 0 0 1 1 1 0 Stage II sporulation protein M Prominin PF05478.11 gi|530548887|ref|YP_008429435.1| - 0.28 9.1 2.2 0.33 8.9 2.2 1.0 1 0 0 1 1 1 0 Prominin SDF PF00375.18 gi|530548888|ref|YP_008429436.1| - 1.6e-81 274.4 19.6 1.9e-81 274.1 19.6 1.0 1 0 0 1 1 1 1 Sodium:dicarboxylate symporter family HTH_37 PF13744.6 gi|530548890|ref|YP_008429438.1| - 0.00069 19.5 0.0 0.00097 19.0 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.22 gi|530548890|ref|YP_008429438.1| - 0.0012 18.8 0.3 0.0012 18.8 0.3 1.6 2 0 0 2 2 2 1 Helix-turn-helix HTH_24 PF13412.6 gi|530548890|ref|YP_008429438.1| - 0.0013 18.3 0.3 0.0024 17.4 0.3 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|530548890|ref|YP_008429438.1| - 0.0026 17.6 0.1 0.0046 16.8 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_19 PF12844.7 gi|530548890|ref|YP_008429438.1| - 0.0079 16.2 0.6 0.016 15.2 0.6 1.6 1 1 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.22 gi|530548890|ref|YP_008429438.1| - 0.015 15.2 0.0 0.048 13.6 0.0 1.7 2 0 0 2 2 2 0 MarR family MarR_2 PF12802.7 gi|530548890|ref|YP_008429438.1| - 0.024 14.5 0.1 0.037 13.9 0.1 1.3 1 0 0 1 1 1 0 MarR family HTH_31 PF13560.6 gi|530548890|ref|YP_008429438.1| - 0.037 14.4 0.1 0.053 13.9 0.1 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_38 PF13936.6 gi|530548890|ref|YP_008429438.1| - 0.048 13.4 1.0 0.087 12.6 1.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Sigma70_ECF PF07638.11 gi|530548890|ref|YP_008429438.1| - 0.082 12.8 0.1 0.15 12.0 0.1 1.5 1 1 0 1 1 1 0 ECF sigma factor HTH_23 PF13384.6 gi|530548890|ref|YP_008429438.1| - 0.13 12.1 0.2 0.22 11.4 0.2 1.4 1 0 0 1 1 1 0 Homeodomain-like domain Prismane PF03063.20 gi|530548891|ref|YP_008429439.1| - 7.8e-117 391.1 0.0 2.8e-99 333.1 0.0 2.0 1 1 1 2 2 2 2 Prismane/CO dehydrogenase family UPF0102 PF02021.17 gi|530548893|ref|YP_008429441.1| - 2.8e-05 24.3 0.2 5e-05 23.4 0.2 1.5 1 0 0 1 1 1 1 Uncharacterised protein family UPF0102 DUF4143 PF13635.6 gi|530548893|ref|YP_008429441.1| - 0.00076 19.6 0.1 0.0032 17.6 0.0 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF4143) Mrr_cat PF04471.12 gi|530548893|ref|YP_008429441.1| - 0.00094 19.2 0.0 0.0022 18.0 0.0 1.6 1 0 0 1 1 1 1 Restriction endonuclease Hjc PF01870.18 gi|530548893|ref|YP_008429441.1| - 0.012 15.6 0.2 0.026 14.5 0.2 1.7 1 1 0 1 1 1 0 Archaeal holliday junction resolvase (hjc) HTH_ParB PF17762.1 gi|530548893|ref|YP_008429441.1| - 0.032 14.1 0.1 11 5.9 0.0 2.6 2 0 0 2 2 2 0 HTH domain found in ParB protein PASTA PF03793.19 gi|530548893|ref|YP_008429441.1| - 0.094 12.6 0.1 4.3 7.3 0.0 2.8 2 1 0 2 2 2 0 PASTA domain AHJR-like PF18743.1 gi|530548893|ref|YP_008429441.1| - 0.11 12.1 0.0 0.18 11.4 0.0 1.4 1 0 0 1 1 1 0 REase_AHJR-like DDE_Tnp_1 PF01609.21 gi|530548895|ref|YP_008429443.1| - 0.00039 20.1 0.0 0.00069 19.3 0.0 1.4 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.6 gi|530548895|ref|YP_008429443.1| - 0.018 15.1 0.0 0.021 14.9 0.0 1.1 1 0 0 1 1 1 0 Transposase DDE domain GDE_N_bis PF14742.6 gi|530548900|ref|YP_008429448.1| - 0.14 11.7 0.0 0.45 10.1 0.0 1.8 2 0 0 2 2 2 0 N-terminal domain of (some) glycogen debranching enzymes DUF4878 PF12870.7 gi|530548901|ref|YP_008429449.1| - 0.13 12.6 0.1 0.47 10.8 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4878) DUF4258 PF14076.6 gi|530548902|ref|YP_008429450.1| - 0.0066 16.8 0.3 0.019 15.3 0.1 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF4258) PBECR1 PF18809.1 gi|530548902|ref|YP_008429450.1| - 0.076 13.7 0.6 0.11 13.2 0.6 1.4 1 1 0 1 1 1 0 phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease1 DUF4144 PF13642.6 gi|530548902|ref|YP_008429450.1| - 0.085 13.4 0.0 0.12 13.0 0.0 1.1 1 0 0 1 1 1 0 protein structure with unknown function Ca_bind_SSO6904 PF18249.1 gi|530548902|ref|YP_008429450.1| - 0.17 12.2 0.9 17 5.8 0.1 2.2 2 0 0 2 2 2 0 Calcium binding protein SSO6904 TrbE PF11100.8 gi|530548908|ref|YP_008429456.1| - 0.58 10.4 2.0 1.8 8.9 2.0 1.9 1 1 0 1 1 1 0 Conjugal transfer protein TrbE SpoV PF08183.11 gi|530548908|ref|YP_008429456.1| - 2.3 8.2 5.7 4.4 7.4 0.0 2.8 3 0 0 3 3 3 0 Stage V sporulation protein family FtsQ PF03799.15 gi|530548913|ref|YP_008429461.1| - 0.0068 17.2 0.1 0.048 14.5 0.0 2.1 2 1 0 2 2 2 1 Cell division protein FtsQ DUF1858 PF08984.11 gi|530548915|ref|YP_008429463.1| - 3.5e-16 59.1 0.0 6.8e-16 58.2 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1858) TusA PF01206.17 gi|530548915|ref|YP_008429463.1| - 1.1e-10 41.2 0.0 2.4e-10 40.1 0.0 1.6 1 0 0 1 1 1 1 Sulfurtransferase TusA DUF2249 PF10006.9 gi|530548915|ref|YP_008429463.1| - 1.5e-07 31.2 0.1 6.9e-07 29.0 0.0 2.1 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2249) DNA_methylase PF00145.17 gi|530548915|ref|YP_008429463.1| - 0.00076 18.9 0.1 0.051 12.9 0.0 2.1 1 1 1 2 2 2 2 C-5 cytosine-specific DNA methylase She2p PF11435.8 gi|530548915|ref|YP_008429463.1| - 0.016 14.9 0.4 0.022 14.5 0.4 1.2 1 0 0 1 1 1 0 RNA binding protein She2p DUF4927 PF16279.5 gi|530548915|ref|YP_008429463.1| - 0.054 14.5 1.6 0.062 14.3 0.7 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4927) Lactamase_B PF00753.27 gi|530548916|ref|YP_008429464.1| - 1.8e-11 44.5 0.0 4.7e-11 43.1 0.0 1.7 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Flavodoxin_1 PF00258.25 gi|530548916|ref|YP_008429464.1| - 0.00014 22.1 0.0 0.00066 19.9 0.0 2.2 2 1 0 2 2 2 1 Flavodoxin Lactamase_B_2 PF12706.7 gi|530548916|ref|YP_008429464.1| - 0.0002 20.9 0.0 0.0004 19.9 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|530548916|ref|YP_008429464.1| - 0.026 14.4 0.0 0.048 13.5 0.0 1.5 1 0 0 1 1 1 0 Beta-lactamase superfamily domain DUF438 PF04282.13 gi|530548917|ref|YP_008429465.1| - 2.3e-24 85.1 2.0 5.2e-24 84.0 2.0 1.7 1 0 0 1 1 1 1 Family of unknown function (DUF438) PAS_10 PF13596.6 gi|530548917|ref|YP_008429465.1| - 3e-22 79.2 0.0 1.1e-21 77.4 0.0 2.0 2 0 0 2 2 2 1 PAS domain Hemerythrin PF01814.23 gi|530548917|ref|YP_008429465.1| - 3.2e-21 76.3 1.7 3.2e-21 76.3 1.7 1.6 2 0 0 2 2 2 1 Hemerythrin HHE cation binding domain PAS_4 PF08448.10 gi|530548917|ref|YP_008429465.1| - 0.00082 19.6 0.0 0.0026 18.0 0.0 1.8 2 0 0 2 2 2 1 PAS fold TFIIS_M PF07500.14 gi|530548917|ref|YP_008429465.1| - 0.089 13.3 1.4 0.19 12.2 0.2 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS), central domain dCache_1 PF02743.18 gi|530548917|ref|YP_008429465.1| - 0.1 12.4 0.0 0.36 10.6 0.0 1.8 2 0 0 2 2 2 0 Cache domain HEAT_UF PF18817.1 gi|530548917|ref|YP_008429465.1| - 0.1 12.9 0.5 3.5 8.0 0.0 2.5 2 0 0 2 2 2 0 Repeat of uncharacterized protein PH0542 HTH_7 PF02796.15 gi|530548917|ref|YP_008429465.1| - 0.17 12.0 0.3 15 5.8 0.0 3.0 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase HTH_40 PF14493.6 gi|530548917|ref|YP_008429465.1| - 0.19 12.2 1.8 24 5.5 0.0 3.7 4 0 0 4 4 4 0 Helix-turn-helix domain Cupin_2 PF07883.11 gi|530548918|ref|YP_008429466.1| - 3.8e-15 55.3 0.0 5.6e-15 54.8 0.0 1.3 1 0 0 1 1 1 1 Cupin domain MannoseP_isomer PF01050.18 gi|530548918|ref|YP_008429466.1| - 2.1e-07 31.0 0.0 2.3e-07 30.8 0.0 1.0 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase AraC_binding PF02311.19 gi|530548918|ref|YP_008429466.1| - 0.00026 20.9 0.0 0.00032 20.6 0.0 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain Pirin_C PF05726.13 gi|530548918|ref|YP_008429466.1| - 0.0014 18.9 0.0 0.0021 18.4 0.0 1.3 1 0 0 1 1 1 1 Pirin C-terminal cupin domain 3-HAO PF06052.12 gi|530548918|ref|YP_008429466.1| - 0.021 14.5 0.0 0.026 14.2 0.0 1.1 1 0 0 1 1 1 0 3-hydroxyanthranilic acid dioxygenase Cupin_1 PF00190.22 gi|530548918|ref|YP_008429466.1| - 0.028 14.0 0.0 0.054 13.1 0.0 1.4 1 1 0 1 1 1 0 Cupin Cupin_3 PF05899.12 gi|530548918|ref|YP_008429466.1| - 0.032 13.9 0.0 0.038 13.7 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF861) DUF4085 PF13315.6 gi|530548918|ref|YP_008429466.1| - 0.041 13.5 0.0 0.05 13.2 0.0 1.2 1 1 0 1 1 1 0 Protein of unknown function (DUF4085) KduI PF04962.12 gi|530548918|ref|YP_008429466.1| - 0.093 12.0 0.0 0.095 12.0 0.0 1.1 1 0 0 1 1 1 0 KduI/IolB family Auxin_BP PF02041.16 gi|530548918|ref|YP_008429466.1| - 0.17 11.5 0.0 0.37 10.4 0.0 1.6 1 1 0 1 1 1 0 Auxin binding protein Peptidase_M24 PF00557.24 gi|530548919|ref|YP_008429467.1| - 1.2e-31 110.0 1.1 1.8e-31 109.5 1.1 1.2 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.18 gi|530548919|ref|YP_008429467.1| - 2.9e-18 66.8 0.1 2.7e-14 54.0 0.1 2.5 2 1 0 2 2 2 2 Creatinase/Prolidase N-terminal domain WEMBL PF05701.11 gi|530548919|ref|YP_008429467.1| - 0.045 12.4 0.2 0.08 11.6 0.2 1.3 1 0 0 1 1 1 0 Weak chloroplast movement under blue light NAD_binding_2 PF03446.15 gi|530548920|ref|YP_008429468.1| - 0.095 12.9 0.2 5.1 7.2 0.1 2.8 3 0 0 3 3 3 0 NAD binding domain of 6-phosphogluconate dehydrogenase PDDEXK_1 PF12705.7 gi|530548920|ref|YP_008429468.1| - 0.1 12.5 0.0 0.14 12.0 0.0 1.3 1 0 0 1 1 1 0 PD-(D/E)XK nuclease superfamily DeoRC PF00455.22 gi|530548920|ref|YP_008429468.1| - 0.16 11.9 0.1 0.26 11.2 0.1 1.3 1 0 0 1 1 1 0 DeoR C terminal sensor domain PMSR PF01625.21 gi|530548921|ref|YP_008429469.1| - 1.1e-60 204.2 0.0 1.4e-60 204.0 0.0 1.1 1 0 0 1 1 1 1 Peptide methionine sulfoxide reductase SelR PF01641.18 gi|530548922|ref|YP_008429470.1| - 9.7e-39 132.2 0.0 1.1e-38 132.0 0.0 1.0 1 0 0 1 1 1 1 SelR domain DUF302 PF03625.14 gi|530548923|ref|YP_008429471.1| - 1.8e-16 59.7 0.5 5.2e-16 58.3 0.5 1.8 1 1 0 1 1 1 1 Domain of unknown function DUF302 DsbD PF02683.15 gi|530548924|ref|YP_008429472.1| - 3.5e-09 36.9 1.8 4.5e-09 36.5 1.8 1.2 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region DsbD_2 PF13386.6 gi|530548924|ref|YP_008429472.1| - 1.2e-07 31.9 1.0 1.7e-07 31.3 1.0 1.3 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region DUF4040 PF13244.6 gi|530548924|ref|YP_008429472.1| - 0.035 14.3 1.6 0.035 14.3 1.6 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4040) DUF202 PF02656.15 gi|530548924|ref|YP_008429472.1| - 4.8 7.7 5.7 53 4.4 5.7 2.2 1 1 0 1 1 1 0 Domain of unknown function (DUF202) Thioredoxin_2 PF13098.6 gi|530548925|ref|YP_008429473.1| - 0.0004 20.8 0.0 0.00079 19.8 0.0 1.5 1 1 0 1 1 1 1 Thioredoxin-like domain DUF2847 PF11009.8 gi|530548925|ref|YP_008429473.1| - 0.0008 19.3 0.0 0.0013 18.6 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF2847) Thioredoxin_4 PF13462.6 gi|530548925|ref|YP_008429473.1| - 0.011 16.0 0.1 0.048 13.8 0.0 1.9 2 0 0 2 2 2 0 Thioredoxin DsbD PF02683.15 gi|530548925|ref|YP_008429473.1| - 0.029 14.3 7.4 0.2 11.5 7.4 2.1 1 1 0 1 1 1 0 Cytochrome C biogenesis protein transmembrane region DUF836 PF05768.14 gi|530548925|ref|YP_008429473.1| - 0.044 14.2 0.0 0.075 13.4 0.0 1.3 1 0 0 1 1 1 0 Glutaredoxin-like domain (DUF836) Thioredoxin_7 PF13899.6 gi|530548925|ref|YP_008429473.1| - 0.048 13.8 0.0 0.078 13.2 0.0 1.4 1 0 0 1 1 1 0 Thioredoxin-like TraF PF13728.6 gi|530548925|ref|YP_008429473.1| - 0.087 12.6 0.0 1.1 9.1 0.0 2.0 2 0 0 2 2 2 0 F plasmid transfer operon protein Nif11 PF07862.11 gi|530548927|ref|YP_008429475.1| - 0.012 15.9 0.1 0.031 14.6 0.0 1.6 2 0 0 2 2 2 0 Nif11 domain Tautomerase PF01361.21 gi|530548929|ref|YP_008429477.1| - 4.8e-08 32.8 1.5 6.7e-08 32.3 1.5 1.3 1 1 0 1 1 1 1 Tautomerase enzyme DUF1904 PF08921.11 gi|530548929|ref|YP_008429477.1| - 0.082 13.2 0.0 0.087 13.1 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1904) Spore_YhcN_YlaJ PF09580.10 gi|530548929|ref|YP_008429477.1| - 0.095 12.8 0.7 0.12 12.5 0.7 1.1 1 0 0 1 1 1 0 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) MatE PF01554.18 gi|530548930|ref|YP_008429478.1| - 1.3e-59 200.5 32.5 1.3e-36 125.7 6.8 3.0 4 0 0 4 4 4 2 MatE Polysacc_synt_C PF14667.6 gi|530548930|ref|YP_008429478.1| - 1.1e-10 41.7 30.3 3.2e-10 40.2 13.8 4.8 2 2 3 5 5 5 2 Polysaccharide biosynthesis C-terminal domain MarR_2 PF12802.7 gi|530548932|ref|YP_008429480.1| - 6.1e-09 35.6 0.1 7.7e-09 35.3 0.1 1.1 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|530548932|ref|YP_008429480.1| - 1.2e-08 34.7 0.1 1.5e-08 34.4 0.1 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|530548932|ref|YP_008429480.1| - 3.5e-08 33.2 0.1 4.7e-08 32.8 0.1 1.3 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 gi|530548932|ref|YP_008429480.1| - 1.6e-05 24.8 0.3 2e-05 24.6 0.3 1.3 1 1 0 1 1 1 1 Helix-turn-helix domain GntR PF00392.21 gi|530548932|ref|YP_008429480.1| - 6.1e-05 22.6 0.6 8.4e-05 22.1 0.6 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_27 PF13463.6 gi|530548932|ref|YP_008429480.1| - 0.00019 21.8 0.1 0.00024 21.5 0.1 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_5 PF01022.20 gi|530548932|ref|YP_008429480.1| - 0.00054 19.8 0.6 0.0014 18.5 0.1 1.8 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family Fe_dep_repress PF01325.19 gi|530548932|ref|YP_008429480.1| - 0.00062 19.9 0.1 0.00083 19.5 0.1 1.2 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Penicillinase_R PF03965.16 gi|530548932|ref|YP_008429480.1| - 0.00092 19.6 0.2 0.0012 19.1 0.1 1.3 1 1 0 1 1 1 1 Penicillinase repressor HTH_IclR PF09339.10 gi|530548932|ref|YP_008429480.1| - 0.0024 17.6 0.1 0.0038 17.0 0.1 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|530548932|ref|YP_008429480.1| - 0.0035 16.9 0.9 0.0042 16.6 0.1 1.5 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.6 gi|530548932|ref|YP_008429480.1| - 0.0061 16.5 0.5 0.0076 16.2 0.5 1.3 1 1 0 1 1 1 1 Crp-like helix-turn-helix domain HxlR PF01638.17 gi|530548932|ref|YP_008429480.1| - 0.0064 16.3 0.2 0.0089 15.9 0.2 1.2 1 0 0 1 1 1 1 HxlR-like helix-turn-helix Rrf2 PF02082.20 gi|530548932|ref|YP_008429480.1| - 0.0067 16.8 0.1 0.009 16.3 0.1 1.3 1 0 0 1 1 1 1 Transcriptional regulator HTH_36 PF13730.6 gi|530548932|ref|YP_008429480.1| - 0.0077 16.2 0.1 0.011 15.7 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_29 PF13551.6 gi|530548932|ref|YP_008429480.1| - 0.014 15.4 0.2 0.02 14.9 0.2 1.2 1 0 0 1 1 1 0 Winged helix-turn helix HTH_DeoR PF08220.12 gi|530548932|ref|YP_008429480.1| - 0.017 14.8 0.1 0.024 14.4 0.1 1.2 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_11 PF08279.12 gi|530548932|ref|YP_008429480.1| - 0.025 14.5 0.1 0.036 14.0 0.1 1.3 1 0 0 1 1 1 0 HTH domain LexA_DNA_bind PF01726.16 gi|530548932|ref|YP_008429480.1| - 0.027 14.2 0.2 0.038 13.8 0.2 1.3 1 0 0 1 1 1 0 LexA DNA binding domain HTH_41 PF14502.6 gi|530548932|ref|YP_008429480.1| - 0.041 13.6 0.2 0.073 12.8 0.2 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain MCM_lid PF17855.1 gi|530548932|ref|YP_008429480.1| - 0.058 13.8 0.0 0.071 13.5 0.0 1.2 1 0 0 1 1 1 0 MCM AAA-lid domain LacI PF00356.21 gi|530548932|ref|YP_008429480.1| - 0.13 12.0 0.1 0.2 11.5 0.1 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, lacI family Flavodoxin_5 PF12724.7 gi|530548933|ref|YP_008429481.1| - 2.8e-10 40.6 0.0 0.00019 21.7 0.0 2.2 1 1 0 2 2 2 2 Flavodoxin domain Flavodoxin_4 PF12682.7 gi|530548933|ref|YP_008429481.1| - 1.3e-07 31.5 0.0 1.3e-05 25.0 0.0 2.1 1 1 0 1 1 1 1 Flavodoxin FMN_red PF03358.15 gi|530548933|ref|YP_008429481.1| - 2.8e-05 23.9 0.0 4.9e-05 23.1 0.0 1.4 1 1 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_3 PF12641.7 gi|530548933|ref|YP_008429481.1| - 0.00036 20.3 0.0 0.087 12.5 0.0 2.3 1 1 1 2 2 2 2 Flavodoxin domain Flavodoxin_1 PF00258.25 gi|530548933|ref|YP_008429481.1| - 0.0023 18.2 0.1 0.054 13.7 0.0 2.6 3 0 0 3 3 3 1 Flavodoxin ArsA_ATPase PF02374.15 gi|530548933|ref|YP_008429481.1| - 0.04 13.1 0.1 0.072 12.3 0.1 1.4 1 0 0 1 1 1 0 Anion-transporting ATPase Flavodoxin_2 PF02525.17 gi|530548933|ref|YP_008429481.1| - 0.13 11.9 0.0 0.34 10.6 0.0 1.6 1 1 0 1 1 1 0 Flavodoxin-like fold Nitroreductase PF00881.24 gi|530548934|ref|YP_008429482.1| - 1.8e-31 109.5 0.6 1.3e-17 64.3 0.3 2.0 1 1 1 2 2 2 2 Nitroreductase family TM1586_NiRdase PF14512.6 gi|530548934|ref|YP_008429482.1| - 2.7e-13 50.0 0.1 8.4e-05 22.2 0.0 3.3 1 1 2 3 3 3 3 Putative TM nitroreductase NAD_binding_2 PF03446.15 gi|530548935|ref|YP_008429483.1| - 5.6e-30 104.6 0.0 9.2e-30 103.9 0.0 1.3 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_11 PF14833.6 gi|530548935|ref|YP_008429483.1| - 1.9e-25 89.5 0.2 2.5e-25 89.1 0.2 1.2 1 0 0 1 1 1 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase F420_oxidored PF03807.17 gi|530548935|ref|YP_008429483.1| - 8.9e-08 32.6 0.0 3e-07 30.9 0.0 1.9 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.19 gi|530548935|ref|YP_008429483.1| - 0.00079 18.8 0.0 0.0015 17.9 0.0 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|530548935|ref|YP_008429483.1| - 0.017 15.4 0.0 0.043 14.1 0.0 1.7 2 0 0 2 2 2 0 Saccharopine dehydrogenase NADP binding domain DMP12 PF16779.5 gi|530548935|ref|YP_008429483.1| - 0.031 14.3 0.1 0.3 11.1 0.0 2.2 2 0 0 2 2 2 0 DNA-mimic protein Shikimate_DH PF01488.20 gi|530548935|ref|YP_008429483.1| - 0.15 12.2 0.0 0.25 11.4 0.0 1.5 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase ThiF PF00899.21 gi|530548936|ref|YP_008429484.1| - 1.3e-44 152.4 0.0 2.1e-44 151.7 0.0 1.2 1 0 0 1 1 1 1 ThiF family TBP PF00352.21 gi|530548936|ref|YP_008429484.1| - 0.00064 19.6 0.0 0.0011 18.8 0.0 1.4 1 0 0 1 1 1 1 Transcription factor TFIID (or TATA-binding protein, TBP) Shikimate_DH PF01488.20 gi|530548936|ref|YP_008429484.1| - 0.0051 16.9 0.0 0.01 15.9 0.0 1.5 1 1 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase DAO PF01266.24 gi|530548936|ref|YP_008429484.1| - 0.05 13.2 0.2 0.093 12.3 0.2 1.4 1 0 0 1 1 1 0 FAD dependent oxidoreductase NAD_binding_7 PF13241.6 gi|530548936|ref|YP_008429484.1| - 0.051 14.0 0.0 0.099 13.1 0.0 1.4 1 0 0 1 1 1 0 Putative NAD(P)-binding ThiI PF02568.14 gi|530548937|ref|YP_008429485.1| - 2.3e-52 177.4 0.0 3.5e-52 176.9 0.0 1.2 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) THUMP PF02926.17 gi|530548937|ref|YP_008429485.1| - 6.2e-22 78.3 3.1 6.2e-22 78.3 3.1 1.9 2 0 0 2 2 2 1 THUMP domain QueC PF06508.13 gi|530548937|ref|YP_008429485.1| - 1.3e-09 37.9 0.0 4.9e-07 29.4 0.0 2.6 1 1 0 1 1 1 1 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.16 gi|530548937|ref|YP_008429485.1| - 7.5e-05 21.7 0.1 0.00012 21.0 0.1 1.3 1 0 0 1 1 1 1 tRNA methyl transferase PAPS_reduct PF01507.19 gi|530548937|ref|YP_008429485.1| - 0.00039 20.5 0.0 0.00075 19.6 0.0 1.5 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family ATP_bind_3 PF01171.20 gi|530548937|ref|YP_008429485.1| - 0.012 15.4 0.0 5.5 6.7 0.0 2.3 2 0 0 2 2 2 0 PP-loop family QueH PF02677.14 gi|530548937|ref|YP_008429485.1| - 0.07 13.2 0.0 0.11 12.5 0.0 1.3 1 0 0 1 1 1 0 Epoxyqueuosine reductase QueH NAD_synthase PF02540.17 gi|530548937|ref|YP_008429485.1| - 0.14 11.3 0.0 0.23 10.5 0.0 1.3 1 0 0 1 1 1 0 NAD synthase Asn_synthase PF00733.21 gi|530548937|ref|YP_008429485.1| - 0.2 11.2 0.0 0.33 10.6 0.0 1.3 1 0 0 1 1 1 0 Asparagine synthase FAM76 PF16046.5 gi|530548938|ref|YP_008429486.1| - 0.0014 18.0 0.4 0.0021 17.5 0.4 1.1 1 0 0 1 1 1 1 FAM76 protein DUF4131 PF13567.6 gi|530548938|ref|YP_008429486.1| - 0.053 13.2 0.1 0.13 11.9 0.1 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) Ferritin PF00210.24 gi|530548939|ref|YP_008429487.1| - 2.4e-47 160.4 4.5 2.8e-47 160.2 4.5 1.0 1 0 0 1 1 1 1 Ferritin-like domain Lipoprotein_10 PF03202.13 gi|530548939|ref|YP_008429487.1| - 0.013 16.0 0.1 0.023 15.1 0.1 1.4 1 0 0 1 1 1 0 Putative mycoplasma lipoprotein, C-terminal region Acid_phosphat_B PF03767.14 gi|530548939|ref|YP_008429487.1| - 0.021 14.4 0.1 0.36 10.4 0.0 2.0 2 0 0 2 2 2 0 HAD superfamily, subfamily IIIB (Acid phosphatase) N6_Mtase PF02384.16 gi|530548940|ref|YP_008429488.1| - 2.3e-16 59.9 0.0 3.8e-16 59.2 0.0 1.2 1 0 0 1 1 1 1 N-6 DNA Methylase Eco57I PF07669.11 gi|530548940|ref|YP_008429488.1| - 6.2e-08 33.1 0.0 1.8e-07 31.6 0.0 1.7 2 0 0 2 2 2 1 Eco57I restriction-modification methylase UPF0020 PF01170.18 gi|530548940|ref|YP_008429488.1| - 0.023 14.4 0.0 0.77 9.4 0.0 2.7 1 1 0 1 1 1 0 Putative RNA methylase family UPF0020 MTS PF05175.14 gi|530548940|ref|YP_008429488.1| - 0.04 13.5 0.0 11 5.6 0.0 2.4 1 1 1 2 2 2 0 Methyltransferase small domain Methyltransf_25 PF13649.6 gi|530548940|ref|YP_008429488.1| - 0.14 12.8 0.0 0.46 11.2 0.0 1.9 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_31 PF13847.6 gi|530548940|ref|YP_008429488.1| - 0.15 11.8 0.0 0.32 10.8 0.0 1.6 1 1 0 1 1 1 0 Methyltransferase domain TAN PF11640.8 gi|530548941|ref|YP_008429489.1| - 0.09 12.9 0.0 0.21 11.7 0.0 1.6 1 0 0 1 1 1 0 Telomere-length maintenance and DNA damage repair TPP_enzyme_C PF02775.21 gi|530548942|ref|YP_008429490.1| - 1e-25 90.3 0.0 4e-25 88.4 0.1 2.0 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.19 gi|530548942|ref|YP_008429490.1| - 3.5e-13 49.8 0.0 6e-13 49.1 0.0 1.4 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Fer4 PF00037.27 gi|530548942|ref|YP_008429490.1| - 5.4e-07 29.2 3.1 5.4e-07 29.2 3.1 2.1 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_16 PF13484.6 gi|530548942|ref|YP_008429490.1| - 0.00018 22.4 0.2 0.0005 21.0 0.2 1.8 1 0 0 1 1 1 1 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|530548942|ref|YP_008429490.1| - 0.00058 19.9 6.5 0.0012 19.0 6.5 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain TPP_enzyme_N PF02776.18 gi|530548942|ref|YP_008429490.1| - 0.00085 19.0 1.0 0.052 13.2 0.1 2.3 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Fer4_10 PF13237.6 gi|530548942|ref|YP_008429490.1| - 0.00087 19.4 6.7 0.0097 16.0 7.7 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|530548942|ref|YP_008429490.1| - 0.00096 19.1 1.7 0.00096 19.1 1.7 2.7 3 0 0 3 3 2 1 4Fe-4S binding domain Fer4_9 PF13187.6 gi|530548942|ref|YP_008429490.1| - 0.0016 18.6 6.3 0.0036 17.4 6.3 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Transketolase_C PF02780.20 gi|530548942|ref|YP_008429490.1| - 0.028 14.3 0.0 0.071 13.0 0.0 1.7 1 0 0 1 1 1 0 Transketolase, C-terminal domain PFOR_II PF17147.4 gi|530548942|ref|YP_008429490.1| - 0.032 14.6 0.0 0.16 12.3 0.0 2.2 2 0 0 2 2 2 0 Pyruvate:ferredoxin oxidoreductase core domain II DXP_synthase_N PF13292.6 gi|530548942|ref|YP_008429490.1| - 0.053 12.7 0.7 0.14 11.4 0.5 1.7 2 0 0 2 2 2 0 1-deoxy-D-xylulose-5-phosphate synthase Transket_pyr PF02779.24 gi|530548942|ref|YP_008429490.1| - 0.064 12.9 0.3 0.2 11.3 0.0 2.0 2 0 0 2 2 2 0 Transketolase, pyrimidine binding domain Fer4_22 PF17179.4 gi|530548942|ref|YP_008429490.1| - 0.072 13.9 0.4 0.17 12.7 0.4 1.6 1 0 0 1 1 1 0 4Fe-4S dicluster domain DUF1024 PF06260.12 gi|530548942|ref|YP_008429490.1| - 0.11 12.8 0.2 1.5 9.1 0.0 2.7 2 1 0 2 2 2 0 Protein of unknown function (DUF1024) Fer4_7 PF12838.7 gi|530548942|ref|YP_008429490.1| - 0.34 11.5 11.1 0.092 13.4 7.0 2.2 2 1 0 2 2 1 0 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|530548942|ref|YP_008429490.1| - 0.34 11.1 11.2 0.036 14.1 3.1 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_17 PF13534.6 gi|530548942|ref|YP_008429490.1| - 0.82 10.3 4.5 0.79 10.3 1.7 2.0 1 1 1 2 2 2 0 4Fe-4S dicluster domain POR PF01558.18 gi|530548943|ref|YP_008429491.1| - 1.2e-39 136.2 0.2 1.5e-39 135.9 0.2 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase ABC_tran PF00005.27 gi|530548944|ref|YP_008429492.1| - 4.5e-22 79.1 0.0 6.2e-22 78.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|530548944|ref|YP_008429492.1| - 2.4e-10 40.7 0.4 8.3e-06 25.8 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|530548944|ref|YP_008429492.1| - 3.9e-06 26.4 0.1 0.068 12.6 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|530548944|ref|YP_008429492.1| - 0.0012 19.1 0.4 0.022 15.0 0.4 2.2 1 1 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 gi|530548944|ref|YP_008429492.1| - 0.002 17.9 0.1 0.48 10.1 0.0 2.2 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_29 PF13555.6 gi|530548944|ref|YP_008429492.1| - 0.0022 17.7 0.0 0.0042 16.8 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_25 PF13481.6 gi|530548944|ref|YP_008429492.1| - 0.003 17.1 0.0 0.0068 16.0 0.0 1.6 2 0 0 2 2 2 1 AAA domain AAA_14 PF13173.6 gi|530548944|ref|YP_008429492.1| - 0.0049 16.9 0.1 0.036 14.1 0.0 2.3 1 1 1 2 2 2 1 AAA domain RsgA_GTPase PF03193.16 gi|530548944|ref|YP_008429492.1| - 0.0055 16.6 0.0 0.012 15.6 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_27 PF13514.6 gi|530548944|ref|YP_008429492.1| - 0.0058 16.2 0.0 0.01 15.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|530548944|ref|YP_008429492.1| - 0.0066 16.6 0.0 0.0089 16.2 0.0 1.3 1 0 0 1 1 1 1 AAA domain NACHT PF05729.12 gi|530548944|ref|YP_008429492.1| - 0.018 14.9 0.3 0.61 10.0 0.0 2.2 2 1 0 2 2 2 0 NACHT domain AAA PF00004.29 gi|530548944|ref|YP_008429492.1| - 0.028 14.8 0.2 0.19 12.1 0.2 2.3 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_13 PF13166.6 gi|530548944|ref|YP_008429492.1| - 0.045 12.4 0.0 1.4 7.5 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.6 gi|530548944|ref|YP_008429492.1| - 0.05 14.1 0.0 0.11 12.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|530548944|ref|YP_008429492.1| - 0.082 12.6 0.0 0.17 11.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|530548944|ref|YP_008429492.1| - 0.092 13.3 0.1 0.27 11.8 0.0 2.1 2 1 0 2 2 2 0 AAA domain AAA_16 PF13191.6 gi|530548944|ref|YP_008429492.1| - 0.092 13.1 0.0 0.13 12.6 0.0 1.6 1 1 0 1 1 1 0 AAA ATPase domain AAA_28 PF13521.6 gi|530548944|ref|YP_008429492.1| - 0.11 12.7 0.0 0.18 12.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain Cytidylate_kin PF02224.18 gi|530548944|ref|YP_008429492.1| - 0.11 12.2 0.0 0.21 11.3 0.0 1.5 1 0 0 1 1 1 0 Cytidylate kinase ACT_7 PF13840.6 gi|530548944|ref|YP_008429492.1| - 0.13 12.0 0.0 0.25 11.2 0.0 1.4 1 0 0 1 1 1 0 ACT domain UPF0051 PF01458.17 gi|530548945|ref|YP_008429493.1| - 6.8e-64 215.5 0.1 8.5e-64 215.2 0.1 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) UPF0051 PF01458.17 gi|530548946|ref|YP_008429494.1| - 1.2e-32 113.4 0.3 1.6e-32 113.0 0.3 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) GTP_EFTU_D3 PF03143.17 gi|530548947|ref|YP_008429495.1| - 1.6e-05 25.1 2.5 1.1 9.5 0.1 3.8 3 0 0 3 3 3 2 Elongation factor Tu C-terminal domain Bac_DNA_binding PF00216.21 gi|530548947|ref|YP_008429495.1| - 0.0026 17.9 0.7 40 4.5 0.0 4.4 4 0 0 4 4 4 3 Bacterial DNA-binding protein IGPS PF00218.21 gi|564287487|ref|YP_008429497.3| - 3.1e-58 196.9 0.0 3.6e-58 196.7 0.0 1.0 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase Glycos_transf_3 PF00591.21 gi|530548950|ref|YP_008429498.1| - 6.9e-81 271.6 0.0 8.5e-81 271.3 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.17 gi|530548950|ref|YP_008429498.1| - 4.4e-12 45.7 0.3 1.6e-11 43.9 0.1 2.0 2 0 0 2 2 2 1 Glycosyl transferase family, helical bundle domain Chorismate_bind PF00425.18 gi|530548951|ref|YP_008429499.1| - 2.1e-92 309.3 0.0 3e-91 305.6 0.1 2.2 2 0 0 2 2 2 1 chorismate binding enzyme Anth_synt_I_N PF04715.13 gi|530548951|ref|YP_008429499.1| - 3.6e-16 59.7 0.2 2.7e-14 53.6 0.0 2.7 3 0 0 3 3 3 1 Anthranilate synthase component I, N terminal region GATase PF00117.28 gi|530548952|ref|YP_008429500.1| - 1.4e-44 152.1 0.0 1.7e-44 151.9 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|530548952|ref|YP_008429500.1| - 2.6e-12 47.0 0.4 2.2e-11 44.0 0.4 1.9 1 1 0 1 1 1 1 Peptidase C26 PRAI PF00697.22 gi|530548953|ref|YP_008429501.1| - 9.8e-31 107.0 0.0 1.2e-30 106.8 0.0 1.1 1 0 0 1 1 1 1 N-(5'phosphoribosyl)anthranilate (PRA) isomerase DUF4287 PF14117.6 gi|530548953|ref|YP_008429501.1| - 0.17 12.0 0.0 0.56 10.4 0.0 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF4287) PALP PF00291.25 gi|530548954|ref|YP_008429502.1| - 5.1e-48 164.0 0.7 7e-48 163.5 0.7 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Trp_syntA PF00290.20 gi|530548955|ref|YP_008429503.1| - 2.8e-78 262.4 0.0 3.3e-78 262.1 0.0 1.0 1 0 0 1 1 1 1 Tryptophan synthase alpha chain His_biosynth PF00977.21 gi|530548955|ref|YP_008429503.1| - 3.2e-08 33.3 0.0 1.5e-07 31.2 0.0 1.9 1 1 1 2 2 2 1 Histidine biosynthesis protein Ribul_P_3_epim PF00834.19 gi|530548955|ref|YP_008429503.1| - 0.00063 19.2 0.0 0.00088 18.7 0.0 1.2 1 0 0 1 1 1 1 Ribulose-phosphate 3 epimerase family PcrB PF01884.17 gi|530548955|ref|YP_008429503.1| - 0.0025 17.3 0.0 0.0054 16.2 0.0 1.6 2 0 0 2 2 2 1 PcrB family TMP-TENI PF02581.17 gi|530548955|ref|YP_008429503.1| - 0.0046 16.3 0.0 0.012 15.0 0.0 1.6 1 0 0 1 1 1 1 Thiamine monophosphate synthase NMO PF03060.15 gi|530548955|ref|YP_008429503.1| - 0.016 14.6 0.0 0.03 13.7 0.0 1.4 1 0 0 1 1 1 0 Nitronate monooxygenase PA PF02225.22 gi|530548955|ref|YP_008429503.1| - 0.032 14.3 0.0 7.2 6.7 0.0 2.2 2 0 0 2 2 2 0 PA domain FMN_dh PF01070.18 gi|530548955|ref|YP_008429503.1| - 0.069 12.2 0.0 0.096 11.7 0.0 1.2 1 0 0 1 1 1 0 FMN-dependent dehydrogenase Radical_SAM PF04055.21 gi|530548955|ref|YP_008429503.1| - 0.087 13.2 0.0 0.77 10.1 0.0 2.1 1 1 1 2 2 2 0 Radical SAM superfamily HisG_C PF08029.11 gi|530548955|ref|YP_008429503.1| - 0.11 12.6 0.0 12 6.1 0.0 2.4 2 0 0 2 2 2 0 HisG, C-terminal domain PDH PF02153.17 gi|530548957|ref|YP_008429505.1| - 3.1e-05 23.1 0.0 3.6e-05 22.9 0.0 1.1 1 0 0 1 1 1 1 Prephenate dehydrogenase Aminotran_1_2 PF00155.21 gi|530548958|ref|YP_008429506.1| - 9.7e-40 136.8 0.0 1.3e-39 136.4 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II Alliinase_C PF04864.13 gi|530548958|ref|YP_008429506.1| - 0.0058 15.5 0.0 0.0094 14.9 0.0 1.3 1 0 0 1 1 1 1 Allinase CM_2 PF01817.21 gi|530548959|ref|YP_008429507.1| - 8.7e-10 38.8 0.0 1.1e-09 38.5 0.0 1.1 1 0 0 1 1 1 1 Chorismate mutase type II Chorismate_synt PF01264.21 gi|530548960|ref|YP_008429508.1| - 9.1e-123 409.1 0.0 1e-122 409.0 0.0 1.0 1 0 0 1 1 1 1 Chorismate synthase EPSP_synthase PF00275.20 gi|530548961|ref|YP_008429509.1| - 1.2e-101 340.4 0.0 1.4e-101 340.3 0.0 1.0 1 0 0 1 1 1 1 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) GHMP_kinases_N PF00288.26 gi|530548962|ref|YP_008429510.1| - 1.9e-08 34.4 5.5 1.3e-07 31.7 4.6 2.3 2 1 1 3 3 3 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|530548962|ref|YP_008429510.1| - 0.0012 19.2 0.2 0.02 15.2 0.0 2.4 2 1 0 2 2 2 1 GHMP kinases C terminal PHA_gran_rgn PF09650.10 gi|530548963|ref|YP_008429511.1| - 0.18 12.1 0.0 0.2 12.0 0.0 1.1 1 0 0 1 1 1 0 Putative polyhydroxyalkanoic acid system protein (PHA_gran_rgn) Shikimate_dh_N PF08501.11 gi|530548964|ref|YP_008429512.1| - 4.8e-32 110.0 0.0 8.2e-32 109.3 0.0 1.4 1 0 0 1 1 1 1 Shikimate dehydrogenase substrate binding domain SDH_C PF18317.1 gi|530548964|ref|YP_008429512.1| - 9.4e-13 47.7 0.4 2e-12 46.7 0.4 1.6 1 0 0 1 1 1 1 Shikimate 5'-dehydrogenase C-terminal domain Shikimate_DH PF01488.20 gi|530548964|ref|YP_008429512.1| - 2e-10 40.9 0.0 2.9e-10 40.3 0.0 1.2 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase Sacchrp_dh_NADP PF03435.18 gi|530548964|ref|YP_008429512.1| - 3.9e-05 23.9 0.0 7e-05 23.1 0.0 1.4 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain ApbA PF02558.16 gi|530548964|ref|YP_008429512.1| - 4.4e-05 23.2 0.1 6.9e-05 22.5 0.1 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA F420_oxidored PF03807.17 gi|530548964|ref|YP_008429512.1| - 0.00011 22.7 0.1 0.00024 21.6 0.1 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent TrkA_N PF02254.18 gi|530548964|ref|YP_008429512.1| - 0.00014 22.1 0.1 0.00023 21.4 0.1 1.4 1 0 0 1 1 1 1 TrkA-N domain DAO PF01266.24 gi|530548964|ref|YP_008429512.1| - 0.00082 19.1 0.0 0.0012 18.5 0.0 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase DUF1188 PF06690.11 gi|530548964|ref|YP_008429512.1| - 0.0086 15.7 0.0 0.012 15.1 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1188) FMO-like PF00743.19 gi|530548964|ref|YP_008429512.1| - 0.011 14.2 0.0 0.033 12.6 0.0 1.6 2 0 0 2 2 2 0 Flavin-binding monooxygenase-like PglD_N PF17836.1 gi|530548964|ref|YP_008429512.1| - 0.012 16.2 0.0 0.028 15.1 0.0 1.6 1 0 0 1 1 1 0 PglD N-terminal domain AlaDh_PNT_C PF01262.21 gi|530548964|ref|YP_008429512.1| - 0.016 14.5 0.0 0.033 13.5 0.0 1.5 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_7 PF13241.6 gi|530548964|ref|YP_008429512.1| - 0.021 15.3 0.0 0.032 14.7 0.0 1.3 1 0 0 1 1 1 0 Putative NAD(P)-binding 2-Hacid_dh_C PF02826.19 gi|530548964|ref|YP_008429512.1| - 0.026 13.9 0.1 0.042 13.2 0.1 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GARS_N PF02844.15 gi|530548964|ref|YP_008429512.1| - 0.027 15.3 0.1 0.045 14.5 0.1 1.4 1 0 0 1 1 1 0 Phosphoribosylglycinamide synthetase, N domain FAD_binding_2 PF00890.24 gi|530548964|ref|YP_008429512.1| - 0.055 12.5 0.1 0.077 12.1 0.1 1.2 1 0 0 1 1 1 0 FAD binding domain adh_short PF00106.25 gi|530548964|ref|YP_008429512.1| - 0.086 12.3 0.1 0.2 11.1 0.1 1.6 2 0 0 2 2 2 0 short chain dehydrogenase NAD_binding_8 PF13450.6 gi|530548964|ref|YP_008429512.1| - 0.088 13.1 0.0 0.2 11.9 0.0 1.6 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain NAD_binding_10 PF13460.6 gi|530548964|ref|YP_008429512.1| - 0.1 12.5 0.0 0.34 10.8 0.0 1.7 1 1 1 2 2 2 0 NAD(P)H-binding FAD_binding_3 PF01494.19 gi|530548964|ref|YP_008429512.1| - 0.13 11.4 0.0 0.23 10.6 0.0 1.3 1 0 0 1 1 1 0 FAD binding domain DHquinase_I PF01487.15 gi|530548965|ref|YP_008429513.1| - 1.9e-39 136.2 0.0 2.1e-39 136.1 0.0 1.0 1 0 0 1 1 1 1 Type I 3-dehydroquinase HMGL-like PF00682.19 gi|530548965|ref|YP_008429513.1| - 0.21 11.1 0.0 0.28 10.7 0.0 1.1 1 0 0 1 1 1 0 HMGL-like DHquinase_I PF01487.15 gi|530548966|ref|YP_008429514.1| - 0.0089 16.3 0.0 0.0094 16.2 0.0 1.0 1 0 0 1 1 1 1 Type I 3-dehydroquinase Response_reg PF00072.24 gi|530548966|ref|YP_008429514.1| - 0.066 13.4 0.0 0.078 13.2 0.0 1.1 1 0 0 1 1 1 0 Response regulator receiver domain DHQ_synthase PF01761.20 gi|530548967|ref|YP_008429515.1| - 9.4e-80 267.5 0.0 1.2e-79 267.2 0.0 1.1 1 0 0 1 1 1 1 3-dehydroquinate synthase Fe-ADH_2 PF13685.6 gi|530548967|ref|YP_008429515.1| - 8.8e-07 28.9 0.0 1.4e-06 28.2 0.0 1.4 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.19 gi|530548967|ref|YP_008429515.1| - 2.5e-05 23.3 0.0 0.00027 19.9 0.0 2.1 2 0 0 2 2 2 1 Iron-containing alcohol dehydrogenase DAHP_synth_1 PF00793.20 gi|530548968|ref|YP_008429516.1| - 5.2e-79 265.0 0.0 6.8e-79 264.6 0.0 1.0 1 0 0 1 1 1 1 DAHP synthetase I family NeuB PF03102.14 gi|530548968|ref|YP_008429516.1| - 1.7e-06 27.7 0.0 5.2e-06 26.1 0.0 1.6 2 0 0 2 2 2 1 NeuB family ComA PF02679.15 gi|530548968|ref|YP_008429516.1| - 0.017 14.6 0.0 0.086 12.3 0.0 1.9 1 1 0 1 1 1 0 (2R)-phospho-3-sulfolactate synthase (ComA) DUF1018 PF06252.12 gi|530548968|ref|YP_008429516.1| - 0.076 14.0 0.0 0.61 11.1 0.0 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF1018) Transket_pyr PF02779.24 gi|530548969|ref|YP_008429517.1| - 1.9e-38 131.9 0.3 9.9e-38 129.6 0.0 2.0 2 1 0 2 2 2 1 Transketolase, pyrimidine binding domain Transketolase_C PF02780.20 gi|530548969|ref|YP_008429517.1| - 1.2e-32 112.4 0.2 2.4e-32 111.4 0.2 1.5 1 0 0 1 1 1 1 Transketolase, C-terminal domain PFOR_II PF17147.4 gi|530548969|ref|YP_008429517.1| - 1.5e-06 28.4 0.0 3.2e-06 27.4 0.0 1.5 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_N PF00456.21 gi|530548970|ref|YP_008429518.1| - 3.7e-29 101.7 0.0 7e-29 100.8 0.0 1.3 1 1 0 1 1 1 1 Transketolase, thiamine diphosphate binding domain E1_dh PF00676.20 gi|530548970|ref|YP_008429518.1| - 2.6e-07 29.9 0.0 4e-07 29.3 0.0 1.3 1 0 0 1 1 1 1 Dehydrogenase E1 component DXP_synthase_N PF13292.6 gi|530548970|ref|YP_008429518.1| - 5.1e-07 29.2 0.0 5.4e-07 29.1 0.0 1.2 1 0 0 1 1 1 1 1-deoxy-D-xylulose-5-phosphate synthase TPP_enzyme_C PF02775.21 gi|530548970|ref|YP_008429518.1| - 8.4e-07 28.9 0.1 3.5e-06 26.9 0.1 1.8 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain XFP_N PF09364.10 gi|530548970|ref|YP_008429518.1| - 5.1e-05 22.2 0.0 6.4e-05 21.9 0.0 1.2 1 0 0 1 1 1 1 XFP N-terminal domain TIR_2 PF13676.6 gi|530548970|ref|YP_008429518.1| - 0.08 13.6 0.0 0.31 11.6 0.0 2.0 2 1 0 2 2 2 0 TIR domain FAF PF11250.8 gi|530548971|ref|YP_008429519.1| - 0.058 13.6 0.5 1.1 9.6 0.1 2.2 2 0 0 2 2 2 0 Fantastic Four meristem regulator AhpC-TSA PF00578.21 gi|530548973|ref|YP_008429521.1| - 2e-38 131.1 0.0 2.5e-38 130.8 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|530548973|ref|YP_008429521.1| - 6.4e-19 68.1 0.0 8e-19 67.8 0.0 1.1 1 0 0 1 1 1 1 Redoxin 1-cysPrx_C PF10417.9 gi|530548973|ref|YP_008429521.1| - 2.1e-06 27.5 0.0 4.2e-06 26.5 0.0 1.5 1 0 0 1 1 1 1 C-terminal domain of 1-Cys peroxiredoxin SCO1-SenC PF02630.14 gi|530548973|ref|YP_008429521.1| - 0.00027 20.9 0.0 0.00057 19.8 0.0 1.5 1 0 0 1 1 1 1 SCO1/SenC Thioredoxin_8 PF13905.6 gi|530548973|ref|YP_008429521.1| - 0.00074 19.8 0.0 0.0012 19.1 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin-like AhpC-TSA_2 PF13911.6 gi|530548973|ref|YP_008429521.1| - 0.0039 17.3 0.0 0.0055 16.8 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA antioxidant enzyme CN_hydrolase PF00795.22 gi|530548973|ref|YP_008429521.1| - 0.013 14.9 0.0 0.018 14.4 0.0 1.2 1 0 0 1 1 1 0 Carbon-nitrogen hydrolase SeqA_N PF17206.3 gi|530548973|ref|YP_008429521.1| - 0.077 12.3 0.1 0.14 11.5 0.1 1.4 1 0 0 1 1 1 0 SeqA protein N-terminal domain FTR1 PF03239.14 gi|530548974|ref|YP_008429522.1| - 6.6e-66 222.6 21.2 7.8e-66 222.3 21.2 1.0 1 0 0 1 1 1 1 Iron permease FTR1 family Peptidase_U4 PF03419.13 gi|530548974|ref|YP_008429522.1| - 0.0092 15.3 1.0 0.0092 15.3 1.0 2.7 2 1 0 3 3 3 1 Sporulation factor SpoIIGA DUF2919 PF11143.8 gi|530548974|ref|YP_008429522.1| - 0.1 12.9 0.2 0.1 12.9 0.2 2.3 3 0 0 3 3 3 0 Protein of unknown function (DUF2919) GHMP_kinases_N PF00288.26 gi|530548974|ref|YP_008429522.1| - 0.77 10.0 4.2 4.2 7.7 0.3 3.1 3 0 0 3 3 3 0 GHMP kinases N terminal domain DUF2569 PF10754.9 gi|530548974|ref|YP_008429522.1| - 1.7 9.1 9.9 1.4 9.4 0.6 3.4 3 1 1 4 4 4 0 Protein of unknown function (DUF2569) CoA_binding_2 PF13380.6 gi|530548975|ref|YP_008429523.1| - 2.8e-35 121.3 0.0 3.1e-35 121.2 0.0 1.0 1 0 0 1 1 1 1 CoA binding domain CoA_binding PF02629.19 gi|530548975|ref|YP_008429523.1| - 1.1e-12 48.5 0.0 1.5e-12 48.0 0.0 1.1 1 0 0 1 1 1 1 CoA binding domain GFO_IDH_MocA PF01408.22 gi|530548975|ref|YP_008429523.1| - 0.017 16.0 0.0 0.021 15.6 0.0 1.5 1 1 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold SpoU_sub_bind PF08032.12 gi|530548975|ref|YP_008429523.1| - 0.051 13.8 0.1 0.2 12.0 0.0 1.8 2 0 0 2 2 2 0 RNA 2'-O ribose methyltransferase substrate binding EcoEI_R_C PF08463.10 gi|530548975|ref|YP_008429523.1| - 0.057 13.5 0.0 0.062 13.4 0.0 1.1 1 0 0 1 1 1 0 EcoEI R protein C-terminal ABC_transp_aux PF09822.9 gi|530548975|ref|YP_008429523.1| - 0.11 11.9 0.0 0.18 11.2 0.0 1.5 1 1 0 1 1 1 0 ABC-type uncharacterized transport system DpaA_N PF16924.5 gi|530548975|ref|YP_008429523.1| - 0.13 12.4 0.0 0.2 11.8 0.0 1.4 1 0 0 1 1 1 0 Dipicolinate synthase subunit A N-terminal domain DUF302 PF03625.14 gi|530548976|ref|YP_008429524.1| - 1.1e-05 25.3 0.0 1.9e-05 24.5 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function DUF302 HMA PF00403.26 gi|530548977|ref|YP_008429525.1| - 1.6e-12 47.7 0.4 2.4e-12 47.1 0.4 1.3 1 1 0 1 1 1 1 Heavy-metal-associated domain TusA PF01206.17 gi|530548977|ref|YP_008429525.1| - 0.0025 17.6 0.1 0.015 15.1 0.1 1.9 1 1 0 1 1 1 1 Sulfurtransferase TusA YHS PF04945.13 gi|530548978|ref|YP_008429526.1| - 5.4e-18 64.8 0.5 8.6e-18 64.2 0.5 1.3 1 0 0 1 1 1 1 YHS domain zf-FCS PF06467.14 gi|530548978|ref|YP_008429526.1| - 0.00098 19.0 0.1 0.00098 19.0 0.1 1.6 2 0 0 2 2 2 1 MYM-type Zinc finger with FCS sequence motif Arc_trans_TRASH PF08394.10 gi|530548978|ref|YP_008429526.1| - 0.004 17.5 0.1 0.004 17.5 0.1 1.8 2 0 0 2 2 2 1 Archaeal TRASH domain FAP206 PF12018.8 gi|530548978|ref|YP_008429526.1| - 0.0073 15.9 0.1 0.0091 15.5 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function Pyr_redox_2 PF07992.14 gi|530548979|ref|YP_008429527.1| - 1.4e-59 201.7 1.5 1.4e-59 201.7 1.5 1.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|530548979|ref|YP_008429527.1| - 2.3e-31 108.3 0.9 1.2e-30 106.0 0.2 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox_3 PF13738.6 gi|530548979|ref|YP_008429527.1| - 2.9e-16 59.6 1.8 1.3e-15 57.4 1.8 1.9 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|530548979|ref|YP_008429527.1| - 4.3e-13 49.6 2.1 6.3e-11 42.7 0.2 2.9 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|530548979|ref|YP_008429527.1| - 2e-09 37.0 2.8 5.4e-07 29.0 0.2 2.9 2 1 0 2 2 2 2 Glucose inhibited division protein A FAD_oxidored PF12831.7 gi|530548979|ref|YP_008429527.1| - 2.4e-06 27.2 2.9 1.3e-05 24.8 0.5 2.4 2 1 1 3 3 3 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|530548979|ref|YP_008429527.1| - 6.5e-05 22.2 4.6 0.00023 20.4 0.5 2.7 3 0 0 3 3 3 1 FAD binding domain HI0933_like PF03486.14 gi|530548979|ref|YP_008429527.1| - 8.6e-05 21.4 1.2 0.005 15.6 0.4 2.7 3 0 0 3 3 3 1 HI0933-like protein FAD_binding_3 PF01494.19 gi|530548979|ref|YP_008429527.1| - 0.0028 16.9 0.6 1.7 7.8 0.1 2.5 2 1 0 2 2 2 2 FAD binding domain DAO PF01266.24 gi|530548979|ref|YP_008429527.1| - 0.02 14.5 0.1 0.26 10.8 0.0 2.2 2 0 0 2 2 2 0 FAD dependent oxidoreductase AAA_21 PF13304.6 gi|530548981|ref|YP_008429529.1| - 1.5e-10 41.4 0.0 2.2e-10 40.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain, putative AbiEii toxin, Type IV TA system ABC_tran PF00005.27 gi|530548981|ref|YP_008429529.1| - 7.5e-08 33.0 0.0 1.4e-07 32.1 0.0 1.4 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|530548981|ref|YP_008429529.1| - 0.003 17.0 0.0 0.004 16.6 0.0 1.2 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain EamA PF00892.20 gi|530548983|ref|YP_008429531.1| - 3.4e-33 114.7 35.7 6.3e-18 65.3 7.1 2.0 2 0 0 2 2 2 2 EamA-like transporter family EmrE PF13536.6 gi|530548983|ref|YP_008429531.1| - 1.1e-08 35.0 3.0 1.1e-08 35.0 3.0 1.4 1 1 0 1 1 1 1 Putative multidrug resistance efflux transporter PUNUT PF16913.5 gi|530548983|ref|YP_008429531.1| - 9.1e-05 21.8 2.6 9.1e-05 21.8 2.6 2.1 2 0 0 2 2 2 1 Purine nucleobase transmembrane transport SLC35F PF06027.12 gi|530548983|ref|YP_008429531.1| - 0.0019 17.7 17.6 0.034 13.7 4.0 2.4 1 1 0 2 2 2 2 Solute carrier family 35 TMEM234 PF10639.9 gi|530548983|ref|YP_008429531.1| - 0.016 15.2 1.1 0.016 15.2 1.1 2.7 2 1 0 2 2 2 0 Putative transmembrane family 234 CRT-like PF08627.10 gi|530548983|ref|YP_008429531.1| - 0.084 11.8 9.5 0.015 14.3 5.8 1.6 1 1 0 1 1 1 0 CRT-like, chloroquine-resistance transporter-like Multi_Drug_Res PF00893.19 gi|530548983|ref|YP_008429531.1| - 0.78 10.5 16.9 0.54 11.0 0.8 3.2 3 0 0 3 3 3 0 Small Multidrug Resistance protein Nucleos_tra2_C PF07662.13 gi|530548983|ref|YP_008429531.1| - 5.8 6.7 13.5 0.15 11.9 1.0 2.8 1 1 1 2 2 2 0 Na+ dependent nucleoside transporter C-terminus Acetyltransf_1 PF00583.25 gi|530548984|ref|YP_008429532.1| - 4.8e-17 62.3 0.0 8.6e-17 61.4 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|530548984|ref|YP_008429532.1| - 3.6e-11 43.1 0.1 1.4e-10 41.2 0.1 1.7 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|530548984|ref|YP_008429532.1| - 1.5e-08 35.0 0.2 2.4e-08 34.3 0.2 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|530548984|ref|YP_008429532.1| - 6e-05 22.9 0.1 9.8e-05 22.2 0.1 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.7 gi|530548984|ref|YP_008429532.1| - 0.0006 19.9 0.0 0.037 14.1 0.0 2.3 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.6 gi|530548984|ref|YP_008429532.1| - 0.0011 18.7 0.0 0.013 15.2 0.0 2.0 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|530548984|ref|YP_008429532.1| - 0.039 14.1 0.1 0.19 11.9 0.0 2.0 1 1 1 2 2 2 0 GCN5-related N-acetyl-transferase Acetyltransf_4 PF13420.7 gi|530548984|ref|YP_008429532.1| - 0.058 13.5 0.1 0.1 12.7 0.1 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain MarR PF01047.22 gi|530548985|ref|YP_008429533.1| - 2.7e-07 30.4 0.0 5.4e-07 29.4 0.0 1.5 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|530548985|ref|YP_008429533.1| - 2.7e-07 30.4 0.0 5.8e-07 29.3 0.0 1.5 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|530548985|ref|YP_008429533.1| - 1.6e-06 27.9 0.0 4.4e-06 26.5 0.0 1.7 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|530548985|ref|YP_008429533.1| - 1.5e-05 24.4 0.0 3.4e-05 23.3 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.6 gi|530548985|ref|YP_008429533.1| - 0.0034 17.3 0.0 0.025 14.6 0.0 2.1 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain Fe_dep_repress PF01325.19 gi|530548985|ref|YP_008429533.1| - 0.0072 16.5 0.6 0.017 15.3 0.0 1.9 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_27 PF13463.6 gi|530548985|ref|YP_008429533.1| - 0.0091 16.5 0.0 0.02 15.3 0.0 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_11 PF08279.12 gi|530548985|ref|YP_008429533.1| - 0.016 15.1 0.0 0.032 14.2 0.0 1.5 1 0 0 1 1 1 0 HTH domain HTH_IclR PF09339.10 gi|530548985|ref|YP_008429533.1| - 0.022 14.6 0.0 0.04 13.7 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain Rrf2 PF02082.20 gi|530548985|ref|YP_008429533.1| - 0.025 14.9 0.0 0.097 13.0 0.0 1.9 2 0 0 2 2 2 0 Transcriptional regulator HTH_23 PF13384.6 gi|530548985|ref|YP_008429533.1| - 0.082 12.7 0.0 0.14 12.0 0.0 1.3 1 0 0 1 1 1 0 Homeodomain-like domain DUF4897 PF16238.5 gi|530548985|ref|YP_008429533.1| - 0.09 12.6 0.4 0.21 11.4 0.3 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4897) Crp PF00325.20 gi|530548985|ref|YP_008429533.1| - 0.11 12.1 0.2 0.3 10.8 0.1 1.8 2 0 0 2 2 2 0 Bacterial regulatory proteins, crp family EF-hand_8 PF13833.6 gi|530548985|ref|YP_008429533.1| - 0.18 11.7 0.0 0.42 10.5 0.0 1.6 1 0 0 1 1 1 0 EF-hand domain pair Focal_AT PF03623.13 gi|530548986|ref|YP_008429534.1| - 0.0048 16.9 5.3 0.048 13.7 0.3 2.8 2 0 0 2 2 2 1 Focal adhesion targeting region Rep_fac_C PF08542.11 gi|530548986|ref|YP_008429534.1| - 0.0099 16.3 1.9 6.3 7.3 0.3 3.0 2 0 0 2 2 2 2 Replication factor C C-terminal domain Cytochrom_B562 PF07361.11 gi|530548986|ref|YP_008429534.1| - 0.051 14.2 6.9 0.3 11.7 0.1 3.8 2 2 0 3 3 3 0 Cytochrome b562 NAAA-beta PF15508.6 gi|530548986|ref|YP_008429534.1| - 0.066 13.5 0.0 0.73 10.2 0.0 2.7 2 1 1 3 3 2 0 beta subunit of N-acylethanolamine-hydrolyzing acid amidase Cbl_N PF02262.16 gi|530548986|ref|YP_008429534.1| - 0.15 12.1 2.6 0.16 12.0 0.4 2.2 2 1 0 2 2 2 0 CBL proto-oncogene N-terminal domain 1 YfdX PF10938.8 gi|530548986|ref|YP_008429534.1| - 0.18 11.7 3.8 0.68 9.9 1.0 2.7 1 1 1 2 2 2 0 YfdX protein YtxH PF12732.7 gi|530548986|ref|YP_008429534.1| - 0.19 12.3 6.5 3.8 8.1 0.2 4.1 2 2 1 3 3 3 0 YtxH-like protein YqaH PF17448.2 gi|530548986|ref|YP_008429534.1| - 0.27 11.6 4.9 0.49 10.7 0.3 3.0 3 1 0 3 3 3 0 Uncharacterized YqaH-like PAH PF02671.21 gi|530548986|ref|YP_008429534.1| - 0.58 10.4 4.2 2.5 8.3 1.9 3.3 2 1 0 2 2 2 0 Paired amphipathic helix repeat HisKA_3 PF07730.13 gi|530548986|ref|YP_008429534.1| - 0.75 10.4 7.8 41 4.8 0.6 4.3 3 2 1 4 4 4 0 Histidine kinase Exo84_C PF16528.5 gi|530548986|ref|YP_008429534.1| - 1.1 9.1 11.7 0.072 12.9 1.3 2.6 3 0 0 3 3 3 0 Exocyst component 84 C-terminal Syntaxin_2 PF14523.6 gi|530548986|ref|YP_008429534.1| - 1.5 9.2 5.8 4.2 7.8 0.7 3.6 2 2 0 2 2 2 0 Syntaxin-like protein TPR_2 PF07719.17 gi|530548986|ref|YP_008429534.1| - 4.5 7.6 7.2 23 5.4 0.1 3.7 3 0 0 3 3 2 0 Tetratricopeptide repeat HTH_5 PF01022.20 gi|530548987|ref|YP_008429535.1| - 1.3e-17 63.3 0.2 2e-17 62.8 0.2 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|530548987|ref|YP_008429535.1| - 5.7e-09 35.9 0.0 9e-09 35.3 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|530548987|ref|YP_008429535.1| - 0.0004 19.9 0.4 0.0013 18.3 0.4 1.9 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_34 PF13601.6 gi|530548987|ref|YP_008429535.1| - 0.0098 16.1 0.1 0.016 15.4 0.1 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain TFIIE_alpha PF02002.17 gi|530548987|ref|YP_008429535.1| - 0.014 15.3 0.8 0.014 15.3 0.8 2.0 1 1 1 2 2 2 0 TFIIE alpha subunit ER PF01133.17 gi|530548987|ref|YP_008429535.1| - 0.033 14.2 1.0 0.13 12.3 1.0 1.9 1 1 0 1 1 1 0 Enhancer of rudimentary Trp_repressor PF01371.19 gi|530548987|ref|YP_008429535.1| - 0.092 12.9 0.0 0.14 12.4 0.0 1.4 1 0 0 1 1 1 0 Trp repressor protein MarR_2 PF12802.7 gi|530548987|ref|YP_008429535.1| - 0.14 12.0 0.0 0.22 11.4 0.0 1.3 1 0 0 1 1 1 0 MarR family E1-E2_ATPase PF00122.20 gi|530548988|ref|YP_008429536.1| - 9e-53 178.5 0.2 9e-53 178.5 0.2 2.0 2 0 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.26 gi|530548988|ref|YP_008429536.1| - 8.2e-40 137.3 4.4 1.4e-39 136.6 3.4 1.8 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HMA PF00403.26 gi|530548988|ref|YP_008429536.1| - 1.8e-10 41.1 2.0 5.5e-10 39.6 0.5 2.5 2 0 0 2 2 2 1 Heavy-metal-associated domain HAD PF12710.7 gi|530548988|ref|YP_008429536.1| - 2.1e-05 25.0 0.0 0.00018 22.0 0.0 2.5 2 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|530548988|ref|YP_008429536.1| - 4.6e-05 23.3 1.5 0.00032 20.5 0.2 2.7 2 1 1 3 3 3 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|530548988|ref|YP_008429536.1| - 0.11 12.6 0.4 0.32 11.1 0.4 1.9 1 1 0 1 1 1 0 Haloacid dehalogenase-like hydrolase DUF302 PF03625.14 gi|530548989|ref|YP_008429537.1| - 1.1e-19 70.0 0.0 2e-19 69.3 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function DUF302 SHOCT PF09851.9 gi|530548990|ref|YP_008429538.1| - 1.3e-10 40.7 7.2 1.7e-10 40.3 7.2 1.2 1 0 0 1 1 1 1 Short C-terminal domain DUF1707 PF08044.11 gi|530548990|ref|YP_008429538.1| - 2.1e-05 24.5 0.8 2.8e-05 24.1 0.8 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1707) GvpG PF05120.12 gi|530548990|ref|YP_008429538.1| - 4.8e-05 23.3 0.5 6e-05 23.0 0.5 1.1 1 0 0 1 1 1 1 Gas vesicle protein G Saf_2TM PF18303.1 gi|530548990|ref|YP_008429538.1| - 0.018 14.6 0.2 0.021 14.4 0.2 1.2 1 0 0 1 1 1 0 SAVED-fused 2TM effector domain HemY_N PF07219.13 gi|530548990|ref|YP_008429538.1| - 0.023 14.9 0.1 0.029 14.6 0.1 1.2 1 0 0 1 1 1 0 HemY protein N-terminus DUF21 PF01595.20 gi|530548990|ref|YP_008429538.1| - 0.026 14.2 0.0 0.032 13.9 0.0 1.1 1 0 0 1 1 1 0 Cyclin M transmembrane N-terminal domain VbhA PF18495.1 gi|530548990|ref|YP_008429538.1| - 0.064 13.1 1.0 0.088 12.7 1.0 1.2 1 0 0 1 1 1 0 Antitoxin VbhA DUF4381 PF14316.6 gi|530548990|ref|YP_008429538.1| - 0.077 13.2 0.2 0.092 13.0 0.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4381) OAD_gamma PF04277.13 gi|530548990|ref|YP_008429538.1| - 0.12 13.0 0.0 0.15 12.6 0.0 1.2 1 0 0 1 1 1 0 Oxaloacetate decarboxylase, gamma chain Methyltransf_31 PF13847.6 gi|530548991|ref|YP_008429539.1| - 1.7e-14 53.9 0.6 6.5e-14 52.0 0.0 2.1 2 1 0 2 2 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|530548991|ref|YP_008429539.1| - 2.1e-14 53.7 0.0 3e-14 53.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|530548991|ref|YP_008429539.1| - 8.1e-14 52.1 0.0 2.3e-13 50.6 0.0 1.8 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|530548991|ref|YP_008429539.1| - 9.7e-13 48.7 0.0 2.9e-12 47.2 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|530548991|ref|YP_008429539.1| - 3.4e-12 46.9 0.0 1e-11 45.4 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|530548991|ref|YP_008429539.1| - 2.7e-11 43.3 0.2 1.6e-10 40.7 0.1 1.9 1 1 1 2 2 2 1 ubiE/COQ5 methyltransferase family DREV PF05219.12 gi|530548991|ref|YP_008429539.1| - 4.8e-05 22.6 0.2 0.00014 21.0 0.2 1.8 1 1 0 1 1 1 1 DREV methyltransferase CheR PF01739.18 gi|530548991|ref|YP_008429539.1| - 0.0008 18.9 0.2 0.44 10.0 0.0 2.7 1 1 2 3 3 3 2 CheR methyltransferase, SAM binding domain OpuAC PF04069.12 gi|530548991|ref|YP_008429539.1| - 0.00097 18.8 0.0 0.0087 15.7 0.0 2.3 3 0 0 3 3 3 1 Substrate binding domain of ABC-type glycine betaine transport system FtsJ PF01728.19 gi|530548991|ref|YP_008429539.1| - 0.002 18.3 0.0 0.0039 17.3 0.0 1.4 1 1 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_32 PF13679.6 gi|530548991|ref|YP_008429539.1| - 0.0027 17.7 0.0 0.0051 16.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_9 PF08003.11 gi|530548991|ref|YP_008429539.1| - 0.0031 16.5 0.0 0.0046 15.9 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) NNMT_PNMT_TEMT PF01234.17 gi|530548991|ref|YP_008429539.1| - 0.0049 16.1 0.0 0.029 13.6 0.0 2.0 2 0 0 2 2 2 1 NNMT/PNMT/TEMT family MTS PF05175.14 gi|530548991|ref|YP_008429539.1| - 0.014 14.9 0.1 0.075 12.6 0.1 1.9 1 1 0 1 1 1 0 Methyltransferase small domain RrnaAD PF00398.20 gi|530548991|ref|YP_008429539.1| - 0.014 14.4 0.0 0.023 13.8 0.0 1.3 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase DUF2194 PF09960.9 gi|530548991|ref|YP_008429539.1| - 0.022 13.1 0.0 0.03 12.7 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised protein conserved in bacteria (DUF2194) PCMT PF01135.19 gi|530548991|ref|YP_008429539.1| - 0.025 14.3 0.0 0.057 13.2 0.0 1.6 1 1 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) PRMT5 PF05185.16 gi|530548991|ref|YP_008429539.1| - 0.03 14.2 0.2 0.041 13.7 0.2 1.2 1 0 0 1 1 1 0 PRMT5 arginine-N-methyltransferase N6_Mtase PF02384.16 gi|530548991|ref|YP_008429539.1| - 0.032 13.5 0.1 0.088 12.1 0.0 1.7 1 1 1 2 2 2 0 N-6 DNA Methylase MerR-DNA-bind PF09278.11 gi|530548991|ref|YP_008429539.1| - 0.033 14.7 0.3 0.58 10.7 0.0 2.5 2 0 0 2 2 2 0 MerR, DNA binding Nitro_FeMo-Co PF02579.17 gi|530548991|ref|YP_008429539.1| - 0.087 13.2 0.0 0.66 10.3 0.0 2.4 2 1 0 2 2 2 0 Dinitrogenase iron-molybdenum cofactor DUF2703 PF10865.8 gi|530548991|ref|YP_008429539.1| - 0.096 12.9 0.1 3.9 7.7 0.0 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF2703) Glutaredoxin PF00462.24 gi|530548991|ref|YP_008429539.1| - 0.15 12.3 0.6 31 4.9 0.0 3.1 3 1 0 3 3 3 0 Glutaredoxin Cys_Met_Meta_PP PF01053.20 gi|530548992|ref|YP_008429540.1| - 1e-166 554.2 0.0 1.2e-166 554.0 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.17 gi|530548992|ref|YP_008429540.1| - 2.4e-10 40.3 0.0 1.3e-09 37.9 0.0 2.1 1 1 1 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_1_2 PF00155.21 gi|530548992|ref|YP_008429540.1| - 8.7e-10 38.3 0.0 1.2e-09 37.9 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 gi|530548992|ref|YP_008429540.1| - 6e-08 32.3 0.0 2.4e-07 30.3 0.0 1.9 1 1 0 1 1 1 1 Beta-eliminating lyase Met_gamma_lyase PF06838.11 gi|530548992|ref|YP_008429540.1| - 1.2e-07 30.6 0.0 1.9e-07 30.0 0.0 1.2 1 0 0 1 1 1 1 Methionine gamma-lyase Aminotran_5 PF00266.19 gi|530548992|ref|YP_008429540.1| - 2.5e-07 30.0 0.0 3.9e-07 29.4 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V GDC-P PF02347.16 gi|530548992|ref|YP_008429540.1| - 0.014 14.2 0.0 0.021 13.6 0.0 1.2 1 0 0 1 1 1 0 Glycine cleavage system P-protein PALP PF00291.25 gi|530548993|ref|YP_008429541.1| - 1.2e-64 218.5 0.1 2.5e-63 214.2 0.1 2.0 1 1 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Peripla_BP_4 PF13407.6 gi|530548993|ref|YP_008429541.1| - 0.051 13.1 0.4 3.9 7.0 0.0 2.6 2 1 1 3 3 3 0 Periplasmic binding protein domain Methyltransf_11 PF08241.12 gi|530548994|ref|YP_008429542.1| - 4.2e-25 88.2 0.0 6.6e-25 87.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|530548994|ref|YP_008429542.1| - 1e-23 83.9 0.0 2e-23 83.0 0.0 1.4 1 1 1 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_31 PF13847.6 gi|530548994|ref|YP_008429542.1| - 1.8e-22 79.8 0.0 2.3e-22 79.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|530548994|ref|YP_008429542.1| - 2.7e-22 79.3 0.0 5.7e-22 78.3 0.0 1.5 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|530548994|ref|YP_008429542.1| - 5.1e-21 75.2 0.0 6.3e-21 74.9 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|530548994|ref|YP_008429542.1| - 4.6e-18 65.8 0.0 7.5e-18 65.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 gi|530548994|ref|YP_008429542.1| - 5.1e-07 29.3 0.0 7.7e-07 28.7 0.0 1.3 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase TehB PF03848.14 gi|530548994|ref|YP_008429542.1| - 1.6e-06 27.7 0.0 2e-06 27.4 0.0 1.1 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_4 PF02390.17 gi|530548994|ref|YP_008429542.1| - 4.1e-06 26.4 0.0 6.8e-06 25.7 0.0 1.3 1 0 0 1 1 1 1 Putative methyltransferase PCMT PF01135.19 gi|530548994|ref|YP_008429542.1| - 9.4e-06 25.5 0.0 1.6e-05 24.8 0.0 1.4 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MetW PF07021.12 gi|530548994|ref|YP_008429542.1| - 0.00065 19.3 0.0 0.00097 18.8 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW UPF0020 PF01170.18 gi|530548994|ref|YP_008429542.1| - 0.0016 18.1 0.0 0.0039 16.9 0.0 1.6 2 0 0 2 2 2 1 Putative RNA methylase family UPF0020 Methyltransf_9 PF08003.11 gi|530548994|ref|YP_008429542.1| - 0.018 14.0 0.0 0.024 13.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) Methyltransf_8 PF05148.15 gi|530548994|ref|YP_008429542.1| - 0.059 13.2 0.0 0.1 12.4 0.0 1.6 1 1 0 1 1 1 0 Hypothetical methyltransferase DUF1043 PF06295.12 gi|530548995|ref|YP_008429543.1| - 0.71 9.9 2.5 5.7 7.0 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1043) SOXp PF12336.8 gi|530548995|ref|YP_008429543.1| - 3.6 8.7 9.0 5.5 8.1 9.0 1.4 1 1 0 1 1 1 0 SOX transcription factor SfLAP PF11139.8 gi|530548997|ref|YP_008429545.1| - 1.6e-08 34.3 12.0 3.2e-08 33.3 12.0 1.4 1 1 0 1 1 1 1 Sap, sulfolipid-1-addressing protein Arc_trans_TRASH PF08394.10 gi|530548998|ref|YP_008429546.1| - 1.7e-18 66.6 9.7 3e-18 65.8 9.7 1.4 1 0 0 1 1 1 1 Archaeal TRASH domain HTH_24 PF13412.6 gi|530548998|ref|YP_008429546.1| - 2.1e-15 56.0 2.1 3.3e-15 55.4 2.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|530548998|ref|YP_008429546.1| - 1.8e-14 53.3 1.8 2.6e-14 52.8 1.8 1.2 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.12 gi|530548998|ref|YP_008429546.1| - 1e-08 35.0 2.1 1.1e-08 34.8 0.4 1.8 2 0 0 2 2 2 1 HTH domain MarR PF01047.22 gi|530548998|ref|YP_008429546.1| - 2.2e-08 33.9 0.7 1.5e-07 31.2 0.2 2.1 2 0 0 2 2 2 1 MarR family MarR_2 PF12802.7 gi|530548998|ref|YP_008429546.1| - 1.1e-07 31.7 0.2 7.3e-07 29.0 0.2 2.1 2 1 0 2 2 2 1 MarR family HTH_5 PF01022.20 gi|530548998|ref|YP_008429546.1| - 1.5e-07 31.2 0.3 2.6e-07 30.4 0.3 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family GntR PF00392.21 gi|530548998|ref|YP_008429546.1| - 5.3e-07 29.2 0.8 1.1e-06 28.2 0.3 1.7 2 0 0 2 2 1 1 Bacterial regulatory proteins, gntR family HTH_Crp_2 PF13545.6 gi|530548998|ref|YP_008429546.1| - 6.8e-07 29.2 0.5 3e-06 27.1 0.4 2.1 2 0 0 2 2 1 1 Crp-like helix-turn-helix domain HTH_23 PF13384.6 gi|530548998|ref|YP_008429546.1| - 7.4e-07 28.8 0.2 2.2e-06 27.3 0.2 1.8 1 0 0 1 1 1 1 Homeodomain-like domain HTH_DeoR PF08220.12 gi|530548998|ref|YP_008429546.1| - 1.9e-06 27.5 0.3 3.3e-06 26.7 0.3 1.4 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_IclR PF09339.10 gi|530548998|ref|YP_008429546.1| - 2.3e-06 27.3 0.1 3.9e-06 26.6 0.1 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|530548998|ref|YP_008429546.1| - 4.4e-06 26.3 0.1 1.1e-05 25.1 0.1 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_28 PF13518.6 gi|530548998|ref|YP_008429546.1| - 1.1e-05 25.5 0.1 2e-05 24.6 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_20 PF12840.7 gi|530548998|ref|YP_008429546.1| - 1.5e-05 25.0 0.1 2.5e-05 24.2 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Mga PF08280.11 gi|530548998|ref|YP_008429546.1| - 1.6e-05 24.9 0.2 3.1e-05 23.9 0.2 1.5 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain Fe_dep_repress PF01325.19 gi|530548998|ref|YP_008429546.1| - 1.8e-05 24.8 0.1 3.9e-05 23.7 0.1 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_29 PF13551.6 gi|530548998|ref|YP_008429546.1| - 4.2e-05 23.5 0.0 9e-05 22.4 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn helix HTH_17 PF12728.7 gi|530548998|ref|YP_008429546.1| - 9.3e-05 22.5 0.2 0.00025 21.1 0.1 1.8 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_30 PF13556.6 gi|530548998|ref|YP_008429546.1| - 0.00026 20.7 0.0 0.00048 19.9 0.0 1.4 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain TrmB PF01978.19 gi|530548998|ref|YP_008429546.1| - 0.00038 20.3 0.1 0.00087 19.1 0.1 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Sigma70_r4 PF04545.16 gi|530548998|ref|YP_008429546.1| - 0.00039 19.9 1.2 0.00051 19.5 0.1 1.8 2 0 0 2 2 1 1 Sigma-70, region 4 zf-FCS PF06467.14 gi|530548998|ref|YP_008429546.1| - 0.00044 20.1 6.0 0.00093 19.1 6.0 1.5 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif HTH_36 PF13730.6 gi|530548998|ref|YP_008429546.1| - 0.00067 19.6 0.0 0.0017 18.3 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_8 PF02954.19 gi|530548998|ref|YP_008429546.1| - 0.002 17.9 0.0 0.005 16.6 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, Fis family HTH_3 PF01381.22 gi|530548998|ref|YP_008429546.1| - 0.0032 17.5 0.1 0.0072 16.4 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix Rrf2 PF02082.20 gi|530548998|ref|YP_008429546.1| - 0.0036 17.6 0.4 0.011 16.1 0.0 1.9 2 0 0 2 2 1 1 Transcriptional regulator LIM PF00412.22 gi|530548998|ref|YP_008429546.1| - 0.0056 16.9 3.8 0.0097 16.1 3.8 1.5 1 0 0 1 1 1 1 LIM domain HTH_10 PF04967.12 gi|530548998|ref|YP_008429546.1| - 0.0066 16.2 0.0 0.016 15.0 0.0 1.6 1 0 0 1 1 1 1 HTH DNA binding domain HTH_31 PF13560.6 gi|530548998|ref|YP_008429546.1| - 0.0086 16.4 0.1 0.019 15.3 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain FaeA PF04703.12 gi|530548998|ref|YP_008429546.1| - 0.0089 16.4 1.5 0.028 14.8 0.1 2.4 3 0 0 3 3 2 1 FaeA-like protein DUF3853 PF12964.7 gi|530548998|ref|YP_008429546.1| - 0.01 16.0 0.1 0.059 13.5 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3853) DUF977 PF06163.11 gi|530548998|ref|YP_008429546.1| - 0.01 15.8 0.1 0.025 14.5 0.0 1.6 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF977) MerR PF00376.23 gi|530548998|ref|YP_008429546.1| - 0.011 15.5 0.8 0.032 14.0 0.8 1.8 1 1 0 1 1 1 0 MerR family regulatory protein HTH_1 PF00126.27 gi|530548998|ref|YP_008429546.1| - 0.015 15.2 0.0 0.027 14.4 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family YHS PF04945.13 gi|530548998|ref|YP_008429546.1| - 0.02 15.0 4.8 0.041 14.0 4.8 1.5 1 0 0 1 1 1 0 YHS domain HTH_22 PF13309.6 gi|530548998|ref|YP_008429546.1| - 0.027 14.5 0.3 0.14 12.2 0.0 2.4 2 1 0 2 2 2 0 HTH domain HTH_Tnp_ISL3 PF13542.6 gi|530548998|ref|YP_008429546.1| - 0.028 13.8 0.0 0.044 13.2 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 DUF2089 PF09862.9 gi|530548998|ref|YP_008429546.1| - 0.028 14.4 1.8 0.029 14.4 0.1 2.0 2 1 0 2 2 1 0 Protein of unknown function (DUF2089) RuvB_C PF05491.13 gi|530548998|ref|YP_008429546.1| - 0.03 14.2 0.7 0.1 12.5 0.1 2.2 3 0 0 3 3 2 0 RuvB C-terminal winged helix domain Glyco_hydro_4 PF02056.16 gi|530548998|ref|YP_008429546.1| - 0.031 13.8 0.1 0.045 13.3 0.1 1.2 1 0 0 1 1 1 0 Family 4 glycosyl hydrolase AsnC_trans_reg PF01037.21 gi|530548998|ref|YP_008429546.1| - 0.033 14.2 0.0 0.099 12.6 0.0 1.9 1 1 0 1 1 1 0 Lrp/AsnC ligand binding domain HTH_37 PF13744.6 gi|530548998|ref|YP_008429546.1| - 0.058 13.4 0.0 0.32 11.0 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain UPF0175 PF03683.13 gi|530548998|ref|YP_008429546.1| - 0.059 13.1 0.0 0.14 11.8 0.0 1.7 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0175) HTH_19 PF12844.7 gi|530548998|ref|YP_008429546.1| - 0.061 13.3 0.5 0.061 13.3 0.5 2.0 2 0 0 2 2 1 0 Helix-turn-helix domain Peptidase_C3 PF00548.20 gi|530548998|ref|YP_008429546.1| - 0.066 13.1 0.0 0.1 12.5 0.0 1.2 1 0 0 1 1 1 0 3C cysteine protease (picornain 3C) PaaX PF07848.12 gi|530548998|ref|YP_008429546.1| - 0.068 13.4 0.1 0.12 12.6 0.1 1.4 1 0 0 1 1 1 0 PaaX-like protein FeoC PF09012.10 gi|530548998|ref|YP_008429546.1| - 0.072 13.2 0.1 0.31 11.1 0.0 2.1 2 0 0 2 2 1 0 FeoC like transcriptional regulator NUMOD1 PF07453.13 gi|530548998|ref|YP_008429546.1| - 0.086 13.1 0.2 0.41 11.0 0.0 2.1 2 0 0 2 2 2 0 NUMOD1 domain Mga PF05043.13 gi|530548998|ref|YP_008429546.1| - 0.092 13.3 1.2 0.28 11.8 0.0 2.2 3 0 0 3 3 2 0 Mga helix-turn-helix domain Sgf11 PF08209.11 gi|530548998|ref|YP_008429546.1| - 0.097 12.3 3.9 1.4 8.6 0.1 2.3 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) HTH_WhiA PF02650.14 gi|530548998|ref|YP_008429546.1| - 0.12 12.7 0.3 0.12 12.7 0.3 2.7 3 1 0 3 3 3 0 WhiA C-terminal HTH domain YdaS_antitoxin PF15943.5 gi|530548998|ref|YP_008429546.1| - 0.13 12.1 0.0 0.48 10.3 0.0 1.9 1 1 1 2 2 2 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT Ta0938 PF11494.8 gi|530548998|ref|YP_008429546.1| - 1.2 9.4 5.7 1.7 8.9 3.4 2.3 1 1 1 3 3 2 0 Ta0938 E1-E2_ATPase PF00122.20 gi|530548999|ref|YP_008429547.1| - 3.7e-60 202.5 2.2 3.7e-60 202.5 2.2 2.4 2 0 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.26 gi|530548999|ref|YP_008429547.1| - 6.2e-48 163.9 6.4 1.2e-47 162.9 6.4 1.5 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.26 gi|530548999|ref|YP_008429547.1| - 2.1e-36 124.2 5.9 2e-18 66.6 0.2 3.3 2 0 0 2 2 2 2 Heavy-metal-associated domain Hydrolase_3 PF08282.12 gi|530548999|ref|YP_008429547.1| - 7.4e-07 29.2 8.0 0.0012 18.7 0.6 3.6 2 1 1 3 3 3 2 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|530548999|ref|YP_008429547.1| - 1.4e-06 28.5 1.9 8.9e-06 25.9 0.3 2.7 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|530548999|ref|YP_008429547.1| - 1.1e-05 25.9 0.1 6.4e-05 23.4 0.0 2.3 1 1 1 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 gi|530548999|ref|YP_008429547.1| - 0.00066 19.8 0.1 0.015 15.4 0.0 3.0 2 1 1 3 3 3 1 Haloacid dehalogenase-like hydrolase FeS_assembly_P PF01883.19 gi|530548999|ref|YP_008429547.1| - 0.0011 19.1 0.3 2.9 8.1 0.0 3.9 3 0 0 3 3 3 1 Iron-sulfur cluster assembly protein Tox-PL-2 PF15643.6 gi|530548999|ref|YP_008429547.1| - 0.0058 16.7 0.3 2.2 8.4 0.1 2.8 2 0 0 2 2 2 1 Papain fold toxin 2 Thioredoxin_3 PF13192.6 gi|530548999|ref|YP_008429547.1| - 0.01 15.9 3.3 0.46 10.6 1.0 3.3 2 0 0 2 2 2 0 Thioredoxin domain RRM_3 PF08777.11 gi|530548999|ref|YP_008429547.1| - 0.042 13.9 1.7 1.6 8.8 0.1 3.1 3 0 0 3 3 3 0 RNA binding motif DUF3213 PF11491.8 gi|530548999|ref|YP_008429547.1| - 0.22 11.7 7.0 0.6 10.3 0.3 3.7 2 1 1 3 3 3 0 Protein of unknown function (DUF3213) IF2_N PF04760.15 gi|530548999|ref|YP_008429547.1| - 0.33 10.8 4.2 44 4.0 0.1 4.6 4 0 0 4 4 4 0 Translation initiation factor IF-2, N-terminal region DUF4059 PF13268.6 gi|530548999|ref|YP_008429547.1| - 0.51 10.8 3.3 1.8 9.0 0.2 2.9 2 0 0 2 2 2 0 Protein of unknown function (DUF4059) Fer2_BFD PF04324.15 gi|530548999|ref|YP_008429547.1| - 0.68 10.3 7.4 2.5 8.5 0.9 3.7 3 0 0 3 3 3 0 BFD-like [2Fe-2S] binding domain Thioredoxin PF00085.20 gi|530549000|ref|YP_008429548.1| - 3.6e-13 49.4 0.0 4.2e-13 49.2 0.0 1.0 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|530549000|ref|YP_008429548.1| - 3.6e-06 27.4 0.1 0.00011 22.7 0.1 2.1 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_3 PF13192.6 gi|530549000|ref|YP_008429548.1| - 2.8e-05 24.1 0.0 4e-05 23.6 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin domain HyaE PF07449.11 gi|530549000|ref|YP_008429548.1| - 0.00043 20.2 0.0 0.0005 20.0 0.0 1.1 1 0 0 1 1 1 1 Hydrogenase-1 expression protein HyaE Glutaredoxin PF00462.24 gi|530549000|ref|YP_008429548.1| - 0.001 19.2 0.0 0.0015 18.7 0.0 1.3 1 0 0 1 1 1 1 Glutaredoxin Redoxin PF08534.10 gi|530549000|ref|YP_008429548.1| - 0.0028 17.4 0.0 0.0032 17.2 0.0 1.3 1 1 0 1 1 1 1 Redoxin Thioredoxin_8 PF13905.6 gi|530549000|ref|YP_008429548.1| - 0.0029 17.9 0.0 0.023 15.0 0.0 2.0 1 1 0 1 1 1 1 Thioredoxin-like AhpC-TSA PF00578.21 gi|530549000|ref|YP_008429548.1| - 0.0049 16.8 0.0 0.0058 16.6 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA family DUF4160 PF13711.6 gi|530549000|ref|YP_008429548.1| - 0.0066 16.7 0.4 0.015 15.6 0.3 1.6 1 1 1 2 2 2 1 Domain of unknown function (DUF4160) DUF836 PF05768.14 gi|530549000|ref|YP_008429548.1| - 0.012 16.0 0.1 0.015 15.7 0.1 1.2 1 0 0 1 1 1 0 Glutaredoxin-like domain (DUF836) Nitroreductase PF00881.24 gi|530549002|ref|YP_008429550.1| - 5.9e-34 117.6 0.0 6.6e-34 117.4 0.0 1.0 1 0 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.6 gi|530549002|ref|YP_008429550.1| - 9.1e-07 28.7 0.0 0.012 15.2 0.0 2.1 2 0 0 2 2 2 2 Putative TM nitroreductase SBF PF01758.16 gi|530549003|ref|YP_008429551.1| - 1.5e-46 158.6 13.8 1.5e-46 158.6 13.8 2.0 2 0 0 2 2 2 1 Sodium Bile acid symporter family SBF_like PF13593.6 gi|530549003|ref|YP_008429551.1| - 1.5e-11 44.2 21.0 3.6e-11 42.9 21.0 1.6 1 1 0 1 1 1 1 SBF-like CPA transporter family (DUF4137) LMWPc PF01451.21 gi|530549004|ref|YP_008429552.1| - 4.8e-26 91.8 0.0 7e-26 91.3 0.0 1.2 1 0 0 1 1 1 1 Low molecular weight phosphotyrosine protein phosphatase HTH_5 PF01022.20 gi|530549005|ref|YP_008429553.1| - 2.7e-07 30.3 0.0 1.9e-06 27.6 0.0 2.1 1 1 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|530549005|ref|YP_008429553.1| - 3.8e-07 30.1 0.0 5.8e-07 29.5 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_12 PF08461.10 gi|530549005|ref|YP_008429553.1| - 6.8e-06 25.9 0.1 8.7e-06 25.6 0.1 1.2 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain FUR PF01475.19 gi|530549005|ref|YP_008429553.1| - 2.5e-05 24.4 0.0 3.6e-05 23.9 0.0 1.2 1 0 0 1 1 1 1 Ferric uptake regulator family PadR PF03551.14 gi|530549005|ref|YP_008429553.1| - 0.00015 21.7 0.1 0.0002 21.3 0.1 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_24 PF13412.6 gi|530549005|ref|YP_008429553.1| - 0.0017 17.9 0.0 0.007 15.9 0.0 2.0 2 1 0 2 2 2 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|530549005|ref|YP_008429553.1| - 0.014 15.3 0.0 0.027 14.4 0.0 1.6 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB RP-C PF03428.13 gi|530549005|ref|YP_008429553.1| - 0.054 13.1 0.0 0.087 12.5 0.0 1.3 1 0 0 1 1 1 0 Replication protein C N-terminal domain HTH_IclR PF09339.10 gi|530549005|ref|YP_008429553.1| - 0.068 13.0 0.0 0.13 12.1 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain GAF_2 PF13185.6 gi|530549006|ref|YP_008429554.1| - 0.18 12.1 0.0 4.2 7.7 0.0 2.1 2 0 0 2 2 2 0 GAF domain SBF PF01758.16 gi|530549007|ref|YP_008429555.1| - 2.3e-37 128.6 17.0 2.3e-37 128.6 17.0 2.3 1 1 1 2 2 2 1 Sodium Bile acid symporter family SBF_like PF13593.6 gi|530549007|ref|YP_008429555.1| - 6.5e-16 58.5 23.8 8.3e-16 58.2 23.8 1.0 1 0 0 1 1 1 1 SBF-like CPA transporter family (DUF4137) Stevor PF17410.2 gi|530549007|ref|YP_008429555.1| - 0.13 11.7 2.8 0.23 11.0 2.8 1.3 1 0 0 1 1 1 0 Subtelomeric Variable Open Reading frame DUF2530 PF10745.9 gi|530549007|ref|YP_008429555.1| - 0.78 10.0 6.4 1.9 8.8 0.1 3.5 3 0 0 3 3 3 0 Protein of unknown function (DUF2530) Orai-1 PF07856.12 gi|530549007|ref|YP_008429555.1| - 5.5 6.6 10.3 2.9 7.5 0.6 3.1 3 0 0 3 3 3 0 Mediator of CRAC channel activity OsmC PF02566.19 gi|530549008|ref|YP_008429556.1| - 2.7e-20 72.7 0.0 3.9e-20 72.2 0.0 1.2 1 0 0 1 1 1 1 OsmC-like protein Cation_efflux PF01545.21 gi|530549009|ref|YP_008429557.1| - 2.1e-50 171.2 13.2 2.5e-50 171.0 13.2 1.1 1 0 0 1 1 1 1 Cation efflux family ZT_dimer PF16916.5 gi|530549009|ref|YP_008429557.1| - 1.4e-11 44.3 0.5 2.7e-11 43.4 0.5 1.4 1 0 0 1 1 1 1 Dimerisation domain of Zinc Transporter DUF5422 PF17459.2 gi|530549009|ref|YP_008429557.1| - 0.079 13.1 0.8 0.14 12.3 0.1 1.7 2 0 0 2 2 2 0 Family of unknown function (DUF5422) Radical_SAM PF04055.21 gi|530549009|ref|YP_008429557.1| - 0.096 13.1 0.0 0.16 12.3 0.0 1.4 1 0 0 1 1 1 0 Radical SAM superfamily CD20 PF04103.15 gi|530549009|ref|YP_008429557.1| - 0.11 12.6 0.1 0.11 12.6 0.1 2.5 2 1 0 2 2 2 0 CD20-like family NrfD PF03916.14 gi|530549009|ref|YP_008429557.1| - 0.18 11.4 6.6 0.23 11.1 6.6 1.2 1 0 0 1 1 1 0 Polysulphide reductase, NrfD Nitro_FeMo-Co PF02579.17 gi|530549010|ref|YP_008429558.1| - 3.1e-13 49.9 0.1 3.5e-13 49.7 0.1 1.0 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor Fer4 PF00037.27 gi|530549011|ref|YP_008429559.1| - 1.1e-09 37.6 16.9 4.8e-08 32.5 3.0 2.8 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|530549011|ref|YP_008429559.1| - 6.5e-09 35.8 9.7 8.9e-09 35.3 9.7 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|530549011|ref|YP_008429559.1| - 8e-09 35.2 12.3 1.8e-05 24.6 1.9 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|530549011|ref|YP_008429559.1| - 2.4e-08 33.6 13.0 2e-06 27.5 2.4 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|530549011|ref|YP_008429559.1| - 6.3e-08 33.1 23.7 1e-05 26.0 13.1 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|530549011|ref|YP_008429559.1| - 2e-07 31.0 10.4 2.6e-07 30.7 10.4 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|530549011|ref|YP_008429559.1| - 4.2e-06 26.8 9.2 6.4e-06 26.2 9.2 1.3 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|530549011|ref|YP_008429559.1| - 0.00024 22.0 11.2 0.025 15.5 3.2 2.1 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 gi|530549011|ref|YP_008429559.1| - 0.00032 21.0 13.0 0.0015 18.9 1.3 2.5 2 1 0 2 2 2 1 4Fe-4S binding domain Fer4_15 PF13459.6 gi|530549011|ref|YP_008429559.1| - 0.0019 18.9 6.7 0.017 15.8 6.7 2.0 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|530549011|ref|YP_008429559.1| - 0.015 15.8 11.2 0.21 12.1 11.2 2.1 1 1 0 1 1 1 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_17 PF13534.6 gi|530549011|ref|YP_008429559.1| - 0.025 15.1 12.5 0.087 13.4 2.4 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_19 PF06902.11 gi|530549011|ref|YP_008429559.1| - 0.079 13.0 3.1 0.095 12.8 3.1 1.1 1 0 0 1 1 1 0 Divergent 4Fe-4S mono-cluster Fer4_8 PF13183.6 gi|530549011|ref|YP_008429559.1| - 0.09 13.2 13.0 0.16 12.4 3.2 2.1 1 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|530549011|ref|YP_008429559.1| - 0.23 12.5 17.6 1.8 9.7 5.6 2.8 2 1 0 2 2 2 0 4Fe-4S binding domain ETF_QO PF05187.13 gi|530549011|ref|YP_008429559.1| - 0.32 11.2 6.0 1.8 8.8 6.0 2.1 1 1 1 2 2 2 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S DUF3079 PF11278.8 gi|530549011|ref|YP_008429559.1| - 0.53 10.1 7.2 1.1 9.2 1.3 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF3079) Fer4_18 PF13746.6 gi|530549011|ref|YP_008429559.1| - 1 9.6 8.5 1.3 9.2 4.4 1.9 1 1 1 2 2 2 0 4Fe-4S dicluster domain DGC PF08859.11 gi|530549013|ref|YP_008429561.1| - 8.8e-29 99.7 1.5 1.1e-28 99.4 1.5 1.1 1 0 0 1 1 1 1 DGC domain ABC_tran PF00005.27 gi|530549014|ref|YP_008429562.1| - 1.5e-27 96.8 0.0 2.1e-27 96.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|530549014|ref|YP_008429562.1| - 1.6e-07 31.5 0.4 0.0069 16.2 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|530549014|ref|YP_008429562.1| - 2.3e-07 30.5 0.0 0.0048 16.3 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|530549014|ref|YP_008429562.1| - 0.0057 16.4 0.0 0.01 15.6 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|530549014|ref|YP_008429562.1| - 0.0061 17.1 0.1 0.009 16.5 0.1 1.3 1 0 0 1 1 1 1 AAA domain PIG-L PF02585.17 gi|530549014|ref|YP_008429562.1| - 0.039 14.6 0.0 0.14 12.8 0.0 1.7 1 1 0 1 1 1 0 GlcNAc-PI de-N-acetylase RsgA_GTPase PF03193.16 gi|530549014|ref|YP_008429562.1| - 0.05 13.5 0.0 0.41 10.5 0.0 2.0 2 0 0 2 2 2 0 RsgA GTPase Peptidase_C3G PF12381.8 gi|530549014|ref|YP_008429562.1| - 0.096 12.1 0.0 0.14 11.6 0.0 1.2 1 0 0 1 1 1 0 Tungro spherical virus-type peptidase STAS PF01740.21 gi|530549014|ref|YP_008429562.1| - 0.14 11.8 0.0 0.33 10.6 0.0 1.6 2 0 0 2 2 2 0 STAS domain Mg_chelatase PF01078.21 gi|530549014|ref|YP_008429562.1| - 0.17 11.2 0.0 0.31 10.4 0.0 1.4 1 1 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_15 PF13175.6 gi|530549014|ref|YP_008429562.1| - 0.2 11.4 0.1 0.27 10.9 0.1 1.2 1 0 0 1 1 1 0 AAA ATPase domain AAA_24 PF13479.6 gi|530549014|ref|YP_008429562.1| - 0.2 11.3 0.9 2.8 7.6 0.2 2.1 2 0 0 2 2 2 0 AAA domain UPF0051 PF01458.17 gi|530549015|ref|YP_008429563.1| - 3.1e-33 115.3 2.7 4e-33 115.0 2.7 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) Nitro_FeMo-Co PF02579.17 gi|530549016|ref|YP_008429564.1| - 9.9e-23 80.3 0.4 9.9e-23 80.3 0.4 1.6 2 0 0 2 2 2 1 Dinitrogenase iron-molybdenum cofactor Syntaxin-6_N PF09177.11 gi|530549017|ref|YP_008429565.1| - 0.37 11.4 2.8 0.84 10.2 0.6 2.0 1 1 1 2 2 2 0 Syntaxin 6, N-terminal FBPase_3 PF01950.16 gi|530549018|ref|YP_008429566.1| - 5.8e-186 617.9 0.0 6.5e-186 617.7 0.0 1.0 1 0 0 1 1 1 1 Fructose-1,6-bisphosphatase DUF1617 PF07761.12 gi|530549018|ref|YP_008429566.1| - 0.15 12.1 0.0 0.42 10.7 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1617) Thioredoxin PF00085.20 gi|530549018|ref|YP_008429566.1| - 0.17 11.8 0.2 0.93 9.5 0.0 2.1 1 1 1 2 2 2 0 Thioredoxin AFOR_N PF02730.15 gi|530549019|ref|YP_008429567.1| - 6e-41 140.5 0.1 2.1e-40 138.8 0.0 1.9 3 0 0 3 3 3 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain AFOR_C PF01314.18 gi|530549019|ref|YP_008429567.1| - 2.3e-20 73.0 0.0 6.1e-20 71.6 0.0 1.6 1 1 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 Peptidase_M19 PF01244.21 gi|530549019|ref|YP_008429567.1| - 0.078 12.1 0.0 0.13 11.4 0.0 1.2 1 0 0 1 1 1 0 Membrane dipeptidase (Peptidase family M19) TIM PF00121.18 gi|530549020|ref|YP_008429568.1| - 8.5e-12 44.9 0.1 5.3e-11 42.4 0.0 1.9 1 1 1 2 2 2 1 Triosephosphate isomerase ThiG PF05690.14 gi|530549020|ref|YP_008429568.1| - 3e-06 26.7 0.8 5.4e-06 25.9 0.1 1.7 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG FMN_dh PF01070.18 gi|530549020|ref|YP_008429568.1| - 0.00022 20.4 0.4 0.00038 19.6 0.1 1.5 2 0 0 2 2 2 1 FMN-dependent dehydrogenase IGPS PF00218.21 gi|530549020|ref|YP_008429568.1| - 0.00048 19.4 0.0 0.00097 18.4 0.0 1.4 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase DHO_dh PF01180.21 gi|530549020|ref|YP_008429568.1| - 0.0043 16.3 0.1 0.0071 15.6 0.1 1.3 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase His_biosynth PF00977.21 gi|530549020|ref|YP_008429568.1| - 0.0064 16.0 0.2 0.022 14.2 0.1 1.9 2 0 0 2 2 2 1 Histidine biosynthesis protein B12-binding PF02310.19 gi|530549020|ref|YP_008429568.1| - 0.012 15.7 0.3 0.027 14.5 0.1 1.7 2 0 0 2 2 2 0 B12 binding domain NanE PF04131.14 gi|530549020|ref|YP_008429568.1| - 0.16 11.1 1.6 0.22 10.7 0.3 1.8 2 1 0 2 2 2 0 Putative N-acetylmannosamine-6-phosphate epimerase RNA_pol_inhib PF16857.5 gi|530549020|ref|YP_008429568.1| - 0.52 10.2 2.4 1.6 8.6 0.0 2.7 3 0 0 3 3 3 0 RNA polymerase inhibitor Regulator_TrmB PF11495.8 gi|530549021|ref|YP_008429569.1| - 8.3e-48 162.6 0.2 1e-47 162.3 0.2 1.1 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB TrmB PF01978.19 gi|530549021|ref|YP_008429569.1| - 1.3e-22 79.4 0.1 4.1e-22 77.8 0.1 1.9 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|530549021|ref|YP_008429569.1| - 0.019 14.8 0.0 0.046 13.6 0.0 1.6 1 1 0 1 1 1 0 MarR family MarR PF01047.22 gi|530549021|ref|YP_008429569.1| - 0.024 14.6 0.0 0.063 13.2 0.0 1.6 1 0 0 1 1 1 0 MarR family HTH_9 PF08221.11 gi|530549021|ref|YP_008429569.1| - 0.031 14.4 0.0 0.087 12.9 0.0 1.7 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain ADH_N_assoc PF13823.6 gi|530549021|ref|YP_008429569.1| - 0.085 12.8 2.6 0.47 10.4 1.0 2.5 2 0 0 2 2 2 0 Alcohol dehydrogenase GroES-associated SLED PF12140.8 gi|530549021|ref|YP_008429569.1| - 0.098 13.2 0.1 0.21 12.1 0.1 1.5 1 0 0 1 1 1 0 SLED domain ABC_tran PF00005.27 gi|530549022|ref|YP_008429570.1| - 3e-34 118.5 0.0 4.7e-34 117.8 0.0 1.3 1 0 0 1 1 1 1 ABC transporter OB_MalK PF17912.1 gi|530549022|ref|YP_008429570.1| - 3e-13 50.4 0.1 1.4e-12 48.3 0.0 2.2 2 0 0 2 2 2 1 MalK OB fold domain TOBE_2 PF08402.10 gi|530549022|ref|YP_008429570.1| - 1.3e-12 47.6 0.2 4.5e-12 46.0 0.0 2.0 2 0 0 2 2 2 1 TOBE domain TOBE PF03459.17 gi|530549022|ref|YP_008429570.1| - 9.5e-06 25.8 0.2 2.6e-05 24.4 0.2 1.8 1 0 0 1 1 1 1 TOBE domain AAA_21 PF13304.6 gi|530549022|ref|YP_008429570.1| - 1.2e-05 25.2 0.0 0.097 12.5 0.0 2.3 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system Rad17 PF03215.15 gi|530549022|ref|YP_008429570.1| - 0.001 19.0 0.0 0.0018 18.2 0.0 1.5 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_16 PF13191.6 gi|530549022|ref|YP_008429570.1| - 0.002 18.5 0.3 0.0074 16.7 0.1 2.0 2 1 0 2 2 2 1 AAA ATPase domain SMC_N PF02463.19 gi|530549022|ref|YP_008429570.1| - 0.002 17.6 0.1 0.098 12.1 0.0 2.2 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA PF00004.29 gi|530549022|ref|YP_008429570.1| - 0.002 18.5 0.3 0.05 14.0 0.0 2.4 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|530549022|ref|YP_008429570.1| - 0.0025 18.1 0.1 0.0055 17.0 0.1 1.6 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|530549022|ref|YP_008429570.1| - 0.022 14.5 0.0 0.062 13.0 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|530549022|ref|YP_008429570.1| - 0.038 14.5 0.0 0.085 13.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|530549022|ref|YP_008429570.1| - 0.048 13.2 0.1 0.14 11.7 0.0 1.7 2 0 0 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 gi|530549022|ref|YP_008429570.1| - 0.053 13.4 0.0 0.13 12.2 0.0 1.6 1 0 0 1 1 1 0 RsgA GTPase AAA_28 PF13521.6 gi|530549022|ref|YP_008429570.1| - 0.056 13.7 0.0 0.11 12.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain G-alpha PF00503.20 gi|530549022|ref|YP_008429570.1| - 0.064 12.4 0.0 0.075 12.2 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit CysA_C_terminal PF17850.1 gi|530549022|ref|YP_008429570.1| - 0.16 12.6 0.0 0.45 11.1 0.0 1.9 1 0 0 1 1 1 0 CysA C-terminal regulatory domain AAA_29 PF13555.6 gi|530549022|ref|YP_008429570.1| - 0.16 11.7 0.1 0.33 10.7 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain BPD_transp_1 PF00528.22 gi|530549023|ref|YP_008429571.1| - 7.1e-18 65.0 21.9 7.1e-18 65.0 21.9 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|530549024|ref|YP_008429572.1| - 1.3e-09 38.0 17.9 1.3e-09 38.0 17.9 2.3 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_8 PF13416.6 gi|530549025|ref|YP_008429573.1| - 1.5e-40 139.8 0.7 2.4e-40 139.1 0.7 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|530549025|ref|YP_008429573.1| - 1.4e-39 137.0 5.1 2.2e-39 136.3 5.1 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 gi|530549025|ref|YP_008429573.1| - 1.2e-07 31.4 0.1 8.3e-06 25.4 0.0 2.3 2 0 0 2 2 2 2 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 gi|530549025|ref|YP_008429573.1| - 0.00017 21.4 0.0 0.0016 18.2 0.0 2.5 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein GFO_IDH_MocA PF01408.22 gi|530549026|ref|YP_008429574.1| - 5.3e-22 78.9 0.1 8.3e-22 78.3 0.1 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 gi|530549026|ref|YP_008429574.1| - 1.8e-07 31.1 0.0 4.5e-07 29.9 0.0 1.7 1 1 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain NAD_binding_3 PF03447.16 gi|530549026|ref|YP_008429574.1| - 0.07 13.8 0.5 0.12 13.1 0.5 1.3 1 0 0 1 1 1 0 Homoserine dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.22 gi|530549027|ref|YP_008429575.1| - 2.6e-29 102.5 0.2 4.6e-29 101.7 0.2 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold NAD_binding_3 PF03447.16 gi|530549027|ref|YP_008429575.1| - 3.7e-07 30.8 0.2 6.9e-07 29.9 0.2 1.4 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain GFO_IDH_MocA_C PF02894.17 gi|530549027|ref|YP_008429575.1| - 1.1e-06 28.6 0.0 1.9e-06 27.8 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain F420_oxidored PF03807.17 gi|530549027|ref|YP_008429575.1| - 0.0032 18.0 1.1 0.0045 17.5 0.2 1.8 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent Glycos_transf_2 PF00535.26 gi|530549028|ref|YP_008429576.1| - 4.3e-09 36.4 0.0 6.9e-09 35.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|530549028|ref|YP_008429576.1| - 4.6e-06 26.7 0.0 8.3e-06 25.9 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase like family 2 YbjQ_1 PF01906.17 gi|530549028|ref|YP_008429576.1| - 0.15 12.7 0.0 0.58 10.8 0.0 2.0 2 0 0 2 2 2 0 Putative heavy-metal-binding DUF3226 PF11536.8 gi|530549029|ref|YP_008429577.1| - 2.4e-12 47.0 0.0 3.1e-12 46.7 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3226) DUF3226 PF11536.8 gi|530549030|ref|YP_008429578.1| - 1.9e-25 89.9 0.0 2.3e-25 89.6 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3226) RHH_1 PF01402.21 gi|530549031|ref|YP_008429579.1| - 0.015 15.3 0.3 0.027 14.4 0.3 1.4 1 0 0 1 1 1 0 Ribbon-helix-helix protein, copG family OrfB_IS605 PF01385.19 gi|530547465|ref|YP_008429580.1| - 1.5e-30 105.9 0.0 3.1e-30 104.9 0.0 1.5 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.11 gi|530547465|ref|YP_008429580.1| - 3.3e-18 65.4 0.0 5.8e-18 64.6 0.0 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.8 gi|530547465|ref|YP_008429580.1| - 0.0067 15.9 0.1 0.02 14.4 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain RuvX PF03652.15 gi|530547465|ref|YP_008429580.1| - 0.058 13.8 0.0 0.16 12.4 0.0 1.7 1 1 0 1 1 1 0 Holliday junction resolvase MAP65_ASE1 PF03999.12 gi|530547465|ref|YP_008429580.1| - 0.063 12.0 0.1 0.09 11.5 0.1 1.2 1 0 0 1 1 1 0 Microtubule associated protein (MAP65/ASE1 family) RepL PF05732.11 gi|530547465|ref|YP_008429580.1| - 0.076 12.4 0.0 0.15 11.5 0.0 1.4 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) Rad51 PF08423.11 gi|530547465|ref|YP_008429580.1| - 0.089 12.0 0.0 0.22 10.8 0.0 1.4 1 1 0 1 1 1 0 Rad51 DUF2391 PF09622.10 gi|530549033|ref|YP_008429582.1| - 2.1e-14 53.5 0.6 2.6e-14 53.2 0.6 1.0 1 0 0 1 1 1 1 Putative integral membrane protein (DUF2391) DUF2205 PF10224.9 gi|530549033|ref|YP_008429582.1| - 0.0031 17.5 2.2 0.0053 16.7 1.6 1.8 2 0 0 2 2 2 1 Short coiled-coil protein THOC7 PF05615.13 gi|530549033|ref|YP_008429582.1| - 0.011 16.0 3.0 0.011 16.0 3.0 1.6 2 0 0 2 2 2 0 Tho complex subunit 7 Phage_GP20 PF06810.11 gi|530549033|ref|YP_008429582.1| - 0.013 15.3 1.1 0.02 14.7 1.1 1.4 1 0 0 1 1 1 0 Phage minor structural protein GP20 bZIP_Maf PF03131.17 gi|530549033|ref|YP_008429582.1| - 0.022 15.3 1.4 0.031 14.8 1.4 1.2 1 0 0 1 1 1 0 bZIP Maf transcription factor Prefoldin PF02996.17 gi|530549033|ref|YP_008429582.1| - 0.045 13.7 4.2 0.068 13.1 4.2 1.3 1 0 0 1 1 1 0 Prefoldin subunit FlxA PF14282.6 gi|530549033|ref|YP_008429582.1| - 0.045 13.7 0.4 0.067 13.2 0.4 1.2 1 0 0 1 1 1 0 FlxA-like protein DNA_repr_REX1B PF14966.6 gi|530549033|ref|YP_008429582.1| - 0.066 13.9 0.1 0.11 13.1 0.1 1.3 1 0 0 1 1 1 0 DNA repair REX1-B Tektin PF03148.14 gi|530549033|ref|YP_008429582.1| - 0.068 11.9 3.1 0.091 11.5 3.1 1.1 1 0 0 1 1 1 0 Tektin family Translin PF01997.16 gi|530549033|ref|YP_008429582.1| - 0.072 13.1 0.2 0.16 12.0 0.1 1.5 1 1 1 2 2 2 0 Translin family Vinculin PF01044.19 gi|530549033|ref|YP_008429582.1| - 0.11 10.7 0.5 0.14 10.4 0.5 1.0 1 0 0 1 1 1 0 Vinculin family MbeD_MobD PF04899.12 gi|530549033|ref|YP_008429582.1| - 0.14 12.3 0.3 0.22 11.7 0.3 1.3 1 0 0 1 1 1 0 MbeD/MobD like DivIC PF04977.15 gi|530549033|ref|YP_008429582.1| - 0.17 11.6 1.4 0.35 10.7 1.4 1.5 1 0 0 1 1 1 0 Septum formation initiator Prefoldin_2 PF01920.20 gi|530549033|ref|YP_008429582.1| - 0.18 11.8 5.0 0.29 11.1 5.0 1.3 1 0 0 1 1 1 0 Prefoldin subunit DASH_Hsk3 PF08227.11 gi|530549033|ref|YP_008429582.1| - 0.19 12.1 0.1 0.36 11.2 0.1 1.4 1 0 0 1 1 1 0 DASH complex subunit Hsk3 like PRP1_N PF06424.12 gi|530549033|ref|YP_008429582.1| - 0.2 12.0 4.1 6.8 7.1 0.0 2.1 2 0 0 2 2 2 0 PRP1 splicing factor, N-terminal APG6_N PF17675.1 gi|530549033|ref|YP_008429582.1| - 0.27 11.7 5.0 0.36 11.3 5.0 1.2 1 0 0 1 1 1 0 Apg6 coiled-coil region FlaC_arch PF05377.11 gi|530549033|ref|YP_008429582.1| - 0.67 10.4 4.3 1.5 9.3 4.3 1.5 1 0 0 1 1 1 0 Flagella accessory protein C (FlaC) DUF2207 PF09972.9 gi|530549033|ref|YP_008429582.1| - 6.1 5.5 7.3 15 4.2 7.3 1.6 1 1 0 1 1 1 0 Predicted membrane protein (DUF2207) TauE PF01925.19 gi|530549034|ref|YP_008429583.1| - 2.6e-34 118.9 35.9 3e-34 118.7 35.9 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE S_layer_C PF05124.12 gi|530549035|ref|YP_008429584.1| - 9e-11 42.2 1.3 9e-11 42.2 1.3 1.9 2 0 0 2 2 2 1 S-layer like family, C-terminal region TcpS PF17456.2 gi|530549035|ref|YP_008429584.1| - 0.0041 17.2 1.2 3.3 7.8 0.1 2.6 2 0 0 2 2 2 2 Toxin-coregulated pilus protein S BcsB PF03170.13 gi|530549035|ref|YP_008429584.1| - 0.047 12.1 0.0 0.083 11.3 0.0 1.4 1 0 0 1 1 1 0 Bacterial cellulose synthase subunit MFS_1 PF07690.16 gi|564287488|ref|YP_008429585.3| - 6.6e-26 91.1 75.1 4.8e-19 68.5 40.2 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1 PF07690.16 gi|530549037|ref|YP_008429586.1| - 3.5e-37 128.1 65.2 4.4e-30 104.8 37.5 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|530549037|ref|YP_008429586.1| - 2e-11 43.5 8.3 2e-11 43.5 8.3 2.0 2 1 0 2 2 2 1 Sugar (and other) transporter MFS_1_like PF12832.7 gi|530549037|ref|YP_008429586.1| - 9.8e-09 34.5 19.2 0.0023 16.9 9.1 3.2 2 1 1 3 3 3 3 MFS_1 like family AAA_lid_5 PF17865.1 gi|530549037|ref|YP_008429586.1| - 0.3 11.2 1.2 8.3 6.5 0.1 2.3 2 0 0 2 2 2 0 Midasin AAA lid domain CLU_N PF15044.6 gi|530549039|ref|YP_008429588.1| - 0.054 13.9 0.4 0.16 12.4 0.1 2.0 2 0 0 2 2 2 0 Mitochondrial function, CLU-N-term DUF463 PF04317.12 gi|530549039|ref|YP_008429588.1| - 0.082 11.8 0.0 0.14 11.1 0.0 1.3 1 0 0 1 1 1 0 YcjX-like family, DUF463 DUF1939 PF09154.10 gi|530549042|ref|YP_008429591.1| - 0.0072 16.5 0.0 0.011 15.9 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1939) FixQ PF05545.11 gi|530549042|ref|YP_008429591.1| - 0.76 9.8 5.6 0.97 9.4 0.5 2.7 2 1 1 3 3 3 0 Cbb3-type cytochrome oxidase component FixQ tRNA_anti-codon PF01336.25 gi|530549044|ref|YP_008429593.1| - 1.5e-10 40.9 0.2 3.6e-10 39.7 0.2 1.7 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain S1 PF00575.23 gi|530549044|ref|YP_008429593.1| - 8.3e-10 38.9 2.6 2.5e-09 37.3 2.6 1.9 1 0 0 1 1 1 1 S1 RNA binding domain DnaJ_CXXCXGXG PF00684.19 gi|530549044|ref|YP_008429593.1| - 1.8e-07 31.4 28.4 1.3e-06 28.7 13.2 2.6 1 1 1 2 2 2 2 DnaJ central domain DHH PF01368.20 gi|530549044|ref|YP_008429593.1| - 4e-05 23.8 0.1 0.00018 21.7 0.0 1.9 2 0 0 2 2 2 1 DHH family TackOD1 PF18551.1 gi|530549044|ref|YP_008429593.1| - 0.00082 19.1 0.5 0.00082 19.1 0.5 2.0 2 0 0 2 2 2 1 Thaumarchaeal output domain 1 tRNA_anti_2 PF13742.6 gi|530549044|ref|YP_008429593.1| - 0.0057 16.8 0.0 0.012 15.8 0.0 1.6 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain Rep_fac-A_3 PF08661.11 gi|530549044|ref|YP_008429593.1| - 0.0085 16.4 0.0 0.022 15.1 0.0 1.7 1 0 0 1 1 1 1 Replication factor A protein 3 DHHA1 PF02272.19 gi|530549044|ref|YP_008429593.1| - 0.0094 16.4 0.0 0.03 14.7 0.0 1.9 1 0 0 1 1 1 1 DHHA1 domain Anti-TRAP PF15777.5 gi|530549044|ref|YP_008429593.1| - 0.019 14.9 25.4 0.097 12.7 0.5 4.2 2 1 1 3 3 3 0 Tryptophan RNA-binding attenuator protein inhibitory protein S1_2 PF13509.6 gi|530549044|ref|YP_008429593.1| - 0.11 12.5 0.2 0.57 10.3 0.3 2.2 2 0 0 2 2 2 0 S1 domain DUF2851 PF11013.8 gi|530549044|ref|YP_008429593.1| - 0.2 10.6 0.0 0.32 10.0 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2851) zinc-ribbons_6 PF07191.12 gi|530549044|ref|YP_008429593.1| - 1.1 9.3 12.1 9.3 6.3 0.4 3.1 2 1 1 3 3 3 0 zinc-ribbons Cytochrome_C7 PF14522.6 gi|530549044|ref|YP_008429593.1| - 1.5 8.8 5.5 16 5.6 2.6 2.4 2 0 0 2 2 2 0 Cytochrome c7 and related cytochrome c DZR PF12773.7 gi|530549044|ref|YP_008429593.1| - 4.2 7.5 15.0 5.1 7.2 7.5 2.9 1 1 1 2 2 2 0 Double zinc ribbon DUF3829 PF12889.7 gi|530549045|ref|YP_008429594.1| - 0.035 13.6 0.2 0.11 11.9 0.0 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF3829) DUF4288 PF14119.6 gi|530549045|ref|YP_008429594.1| - 0.047 14.1 0.6 0.11 13.0 0.6 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4288) KIX PF02172.16 gi|530549045|ref|YP_008429594.1| - 0.091 13.0 0.8 0.14 12.5 0.5 1.6 1 1 0 1 1 1 0 KIX domain Asparaginase PF00710.20 gi|530549046|ref|YP_008429595.1| - 1.3e-60 204.3 0.0 2e-60 203.7 0.0 1.3 1 0 0 1 1 1 1 Asparaginase, N-terminal Asparaginase_C PF17763.1 gi|530549046|ref|YP_008429595.1| - 4.4e-31 107.4 0.0 1.5e-30 105.7 0.0 1.8 2 0 0 2 2 2 1 Glutaminase/Asparaginase C-terminal domain BTRD1 PF17660.1 gi|530549046|ref|YP_008429595.1| - 0.13 12.1 0.1 0.28 11.0 0.1 1.5 1 0 0 1 1 1 0 Bacterial tandem repeat domain 1 MFS_1 PF07690.16 gi|530549047|ref|YP_008429596.1| - 1.2e-42 146.2 29.4 1.9e-27 96.2 8.3 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|530549047|ref|YP_008429596.1| - 2.7e-07 29.8 24.1 7.2e-06 25.1 2.5 3.0 2 1 0 2 2 2 2 Sugar (and other) transporter MFS_1_like PF12832.7 gi|530549047|ref|YP_008429596.1| - 5.9e-07 28.7 19.1 4.7e-06 25.7 19.1 1.9 1 1 0 1 1 1 1 MFS_1 like family MFS_2 PF13347.6 gi|530549047|ref|YP_008429596.1| - 0.00064 18.4 19.7 0.00064 18.4 19.7 2.7 1 1 0 1 1 1 1 MFS/sugar transport protein PadR PF03551.14 gi|530549048|ref|YP_008429597.1| - 8.1e-16 57.8 0.2 1e-15 57.4 0.2 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family RTP PF02334.16 gi|530549048|ref|YP_008429597.1| - 1.1e-05 26.0 0.1 1.4e-05 25.7 0.1 1.1 1 0 0 1 1 1 1 Replication terminator protein HTH_34 PF13601.6 gi|530549048|ref|YP_008429597.1| - 0.00053 20.1 0.0 0.00091 19.4 0.0 1.4 1 1 0 1 1 1 1 Winged helix DNA-binding domain HTH_12 PF08461.10 gi|530549048|ref|YP_008429597.1| - 0.01 15.7 0.0 0.019 14.9 0.0 1.5 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain FUR PF01475.19 gi|530549048|ref|YP_008429597.1| - 0.11 12.6 0.0 0.12 12.5 0.0 1.2 1 0 0 1 1 1 0 Ferric uptake regulator family HTH_5 PF01022.20 gi|530549048|ref|YP_008429597.1| - 0.12 12.2 0.7 9 6.3 0.1 2.2 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family MnhB PF04039.13 gi|530549049|ref|YP_008429598.1| - 0.24 11.7 7.6 0.083 13.2 2.6 2.1 1 1 0 2 2 2 0 Domain related to MnhB subunit of Na+/H+ antiporter Claudin_3 PF06653.11 gi|530549049|ref|YP_008429598.1| - 0.96 9.4 14.9 2.6 8.0 1.5 2.3 1 1 1 2 2 2 0 Tight junction protein, Claudin-like 4HBT PF03061.22 gi|530549050|ref|YP_008429599.1| - 1.2e-08 35.2 0.0 2.1e-08 34.4 0.0 1.4 1 0 0 1 1 1 1 Thioesterase superfamily MaoC_dehydratas PF01575.19 gi|530549050|ref|YP_008429599.1| - 7.7e-07 28.7 0.1 1.1e-06 28.2 0.1 1.2 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.6 gi|530549050|ref|YP_008429599.1| - 0.0032 17.6 0.1 0.006 16.7 0.1 1.7 1 1 0 1 1 1 1 N-terminal half of MaoC dehydratase DUF3615 PF12274.8 gi|530549050|ref|YP_008429599.1| - 0.049 14.1 0.2 0.19 12.2 0.1 1.8 1 1 0 2 2 2 0 Protein of unknown function (DUF3615) Totivirus_coat PF05518.11 gi|530549050|ref|YP_008429599.1| - 0.092 10.8 0.0 0.13 10.3 0.0 1.0 1 0 0 1 1 1 0 Totivirus coat protein DUF2240 PF09999.9 gi|530549051|ref|YP_008429600.1| - 1.3e-09 37.8 0.0 1.3e-07 31.4 0.0 2.0 1 1 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2240) SelB-wing_2 PF09106.11 gi|530549051|ref|YP_008429600.1| - 0.055 13.7 0.0 0.11 12.7 0.0 1.5 1 0 0 1 1 1 0 Elongation factor SelB, winged helix Isochorismatase PF00857.20 gi|530549052|ref|YP_008429601.1| - 2.2e-47 161.5 0.0 2.5e-47 161.3 0.0 1.0 1 0 0 1 1 1 1 Isochorismatase family Put_DNA-bind_N PF06971.13 gi|530549052|ref|YP_008429601.1| - 0.052 13.6 0.2 0.28 11.2 0.1 2.1 2 0 0 2 2 2 0 Putative DNA-binding protein N-terminus PFK PF00365.20 gi|530549052|ref|YP_008429601.1| - 0.058 12.7 0.0 0.14 11.5 0.0 1.5 1 1 0 1 1 1 0 Phosphofructokinase DUF2150 PF09920.9 gi|530549052|ref|YP_008429601.1| - 0.061 13.3 0.3 0.095 12.7 0.3 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2150) HTH_41 PF14502.6 gi|530549052|ref|YP_008429601.1| - 0.18 11.5 0.3 2.5 7.9 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain AI-2E_transport PF01594.16 gi|530549053|ref|YP_008429602.1| - 2.1e-39 135.6 31.4 3.4e-39 134.9 31.4 1.3 1 1 0 1 1 1 1 AI-2E family transporter Fez1 PF06818.15 gi|530549054|ref|YP_008429603.1| - 0.016 15.6 4.2 0.023 15.1 3.9 1.4 1 1 0 1 1 1 0 Fez1 HTH_26 PF13443.6 gi|530549054|ref|YP_008429603.1| - 0.056 13.9 0.4 0.14 12.6 0.4 1.6 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain DUF4795 PF16043.5 gi|530549054|ref|YP_008429603.1| - 0.11 12.1 7.8 0.023 14.3 3.6 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4795) OmpH PF03938.14 gi|530549054|ref|YP_008429603.1| - 0.16 12.3 3.6 0.33 11.3 3.6 1.4 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) FlxA PF14282.6 gi|530549054|ref|YP_008429603.1| - 0.55 10.2 3.9 1.1 9.3 3.9 1.4 1 0 0 1 1 1 0 FlxA-like protein Tex_N PF09371.10 gi|530549054|ref|YP_008429603.1| - 0.62 9.7 5.7 4 7.1 0.1 2.2 2 0 0 2 2 2 0 Tex-like protein N-terminal domain PQQ PF01011.21 gi|530549055|ref|YP_008429604.1| - 0.041 13.8 0.3 0.083 12.9 0.0 1.7 2 0 0 2 2 2 0 PQQ enzyme repeat KASH PF10541.9 gi|530549055|ref|YP_008429604.1| - 0.061 13.6 0.3 0.094 13.0 0.3 1.3 1 0 0 1 1 1 0 Nuclear envelope localisation domain ETRAMP PF09716.10 gi|530549055|ref|YP_008429604.1| - 0.11 12.5 0.0 0.12 12.5 0.0 1.2 1 0 0 1 1 1 0 Malarial early transcribed membrane protein (ETRAMP) PQQ_3 PF13570.6 gi|564287489|ref|YP_008429605.3| - 0.1 13.1 8.3 1.4 9.5 0.6 3.3 3 1 0 3 3 3 0 PQQ-like domain DSPn PF14671.6 gi|530549057|ref|YP_008429606.1| - 0.022 15.2 0.2 1.7 9.1 0.0 2.1 2 0 0 2 2 2 0 Dual specificity protein phosphatase, N-terminal half DUF995 PF06191.12 gi|530549057|ref|YP_008429606.1| - 0.097 12.4 0.0 0.13 12.0 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF995) QueC PF06508.13 gi|530549058|ref|YP_008429607.1| - 3.1e-11 43.2 0.0 4.8e-11 42.6 0.0 1.3 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC ATP_bind_3 PF01171.20 gi|530549058|ref|YP_008429607.1| - 6.2e-08 32.6 0.0 1.2e-07 31.7 0.0 1.5 1 0 0 1 1 1 1 PP-loop family tRNA_Me_trans PF03054.16 gi|530549058|ref|YP_008429607.1| - 2.1e-07 30.1 0.0 3.5e-07 29.4 0.0 1.3 1 0 0 1 1 1 1 tRNA methyl transferase PAPS_reduct PF01507.19 gi|530549058|ref|YP_008429607.1| - 2.6e-06 27.6 0.0 3.3e-06 27.2 0.0 1.3 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family NAD_synthase PF02540.17 gi|530549058|ref|YP_008429607.1| - 3.8e-05 22.9 0.0 5.6e-05 22.4 0.0 1.2 1 0 0 1 1 1 1 NAD synthase Diphthami_syn_2 PF01902.17 gi|530549058|ref|YP_008429607.1| - 0.00014 21.4 0.0 0.00026 20.6 0.0 1.4 1 0 0 1 1 1 1 Diphthamide synthase Arginosuc_synth PF00764.19 gi|530549058|ref|YP_008429607.1| - 0.00033 20.1 0.0 0.00055 19.3 0.0 1.3 1 0 0 1 1 1 1 Arginosuccinate synthase ThiI PF02568.14 gi|530549058|ref|YP_008429607.1| - 0.001 18.7 0.0 0.0021 17.7 0.0 1.5 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) Asn_synthase PF00733.21 gi|530549058|ref|YP_008429607.1| - 0.014 15.0 0.0 0.017 14.8 0.0 1.1 1 0 0 1 1 1 0 Asparagine synthase DNA_pol_B_thumb PF14791.6 gi|530549058|ref|YP_008429607.1| - 0.034 14.3 0.4 1.2 9.4 0.0 3.0 3 1 0 3 3 3 0 DNA polymerase beta thumb zf-RRPl_C4 PF17026.5 gi|530549058|ref|YP_008429607.1| - 0.038 14.1 1.5 2.6 8.2 0.2 2.3 2 0 0 2 2 2 0 Putative ribonucleoprotein zinc-finger pf C4 type Enkurin PF13864.6 gi|530549058|ref|YP_008429607.1| - 0.064 13.7 0.1 22 5.5 0.0 2.6 2 0 0 2 2 2 0 Calmodulin-binding Radical_SAM PF04055.21 gi|530549059|ref|YP_008429608.1| - 3.3e-16 60.1 4.7 1.7e-14 54.6 3.2 2.7 2 1 0 2 2 2 1 Radical SAM superfamily TBP PF00352.21 gi|530549059|ref|YP_008429608.1| - 0.0014 18.5 0.1 0.0036 17.2 0.1 1.7 1 0 0 1 1 1 1 Transcription factor TFIID (or TATA-binding protein, TBP) Fer4_14 PF13394.6 gi|530549059|ref|YP_008429608.1| - 0.0044 17.1 0.8 0.42 10.8 0.8 2.9 1 1 0 1 1 1 1 4Fe-4S single cluster domain Flot PF15975.5 gi|530549060|ref|YP_008429609.1| - 0.2 11.9 0.0 0.2 11.9 0.0 1.1 1 0 0 1 1 1 0 Flotillin Met_10 PF02475.16 gi|530549061|ref|YP_008429610.1| - 1.9e-68 230.2 0.6 2.3e-68 229.9 0.6 1.1 1 0 0 1 1 1 1 Met-10+ like-protein RrnaAD PF00398.20 gi|530549061|ref|YP_008429610.1| - 0.00021 20.5 0.0 0.00026 20.2 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase PrmA PF06325.13 gi|530549061|ref|YP_008429610.1| - 0.00066 19.2 0.0 0.00093 18.7 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Cons_hypoth95 PF03602.15 gi|530549061|ref|YP_008429610.1| - 0.00098 18.8 0.0 0.0016 18.2 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_15 PF09445.10 gi|530549061|ref|YP_008429610.1| - 0.0038 16.8 0.0 0.0059 16.2 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase MTS PF05175.14 gi|530549061|ref|YP_008429610.1| - 0.0063 16.1 0.0 0.012 15.2 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_25 PF13649.6 gi|530549061|ref|YP_008429610.1| - 0.0084 16.8 0.0 0.015 16.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain DNA_methylase PF00145.17 gi|530549061|ref|YP_008429610.1| - 0.0098 15.3 0.0 0.015 14.6 0.0 1.3 1 0 0 1 1 1 1 C-5 cytosine-specific DNA methylase ADH_zinc_N PF00107.26 gi|530549061|ref|YP_008429610.1| - 0.026 14.5 0.0 0.05 13.6 0.0 1.5 1 0 0 1 1 1 0 Zinc-binding dehydrogenase DNA_pol3_a_NII PF11490.8 gi|530549062|ref|YP_008429611.1| - 0.019 14.8 0.1 0.055 13.4 0.0 1.9 1 1 0 1 1 1 0 DNA polymerase III polC-type N-terminus II D5_N PF08706.11 gi|530549062|ref|YP_008429611.1| - 0.054 13.7 0.1 0.081 13.2 0.1 1.3 1 1 0 1 1 1 0 D5 N terminal like PDDEXK_1 PF12705.7 gi|530549063|ref|YP_008429612.1| - 6.1e-05 23.1 0.2 0.00036 20.5 0.1 1.8 1 1 1 2 2 2 1 PD-(D/E)XK nuclease superfamily Cas_Cas4 PF01930.17 gi|530549063|ref|YP_008429612.1| - 0.0002 21.5 0.1 0.0028 17.8 0.1 2.3 1 1 0 1 1 1 1 Domain of unknown function DUF83 Lactamase_B PF00753.27 gi|530549064|ref|YP_008429613.1| - 5e-13 49.5 0.0 7.4e-13 49.0 0.0 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|530549064|ref|YP_008429613.1| - 0.0012 18.4 0.0 0.0015 18.0 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|530549064|ref|YP_008429613.1| - 0.0012 18.7 0.0 0.0017 18.2 0.0 1.5 1 1 0 1 1 1 1 Beta-lactamase superfamily domain HD_3 PF13023.6 gi|530549065|ref|YP_008429614.1| - 6.2e-30 104.3 0.1 7.1e-30 104.1 0.1 1.1 1 0 0 1 1 1 1 HD domain HD_2 PF12917.7 gi|530549065|ref|YP_008429614.1| - 1.7e-17 63.8 0.2 4.6e-17 62.4 0.2 1.6 1 1 0 1 1 1 1 HD containing hydrolase-like enzyme HD PF01966.22 gi|530549065|ref|YP_008429614.1| - 2e-10 40.9 0.4 4.2e-09 36.7 0.4 2.1 1 1 0 1 1 1 1 HD domain tRNA_anti-like PF12869.7 gi|530549066|ref|YP_008429615.1| - 0.018 14.7 0.0 0.023 14.3 0.0 1.2 1 0 0 1 1 1 0 tRNA_anti-like MMR_HSR1 PF01926.23 gi|530549067|ref|YP_008429616.1| - 3.1e-22 78.8 0.1 4.9e-22 78.2 0.1 1.3 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|530549067|ref|YP_008429616.1| - 3.3e-11 42.9 0.4 7.3e-11 41.8 0.4 1.5 1 1 0 1 1 1 1 Ferrous iron transport protein B GTP_EFTU PF00009.27 gi|530549067|ref|YP_008429616.1| - 8e-10 38.6 0.2 2.4e-06 27.2 0.0 2.3 2 1 0 2 2 2 2 Elongation factor Tu GTP binding domain Dynamin_N PF00350.23 gi|530549067|ref|YP_008429616.1| - 4.9e-09 36.5 0.2 1.7e-05 24.9 0.1 2.5 2 1 1 3 3 3 2 Dynamin family RsgA_GTPase PF03193.16 gi|530549067|ref|YP_008429616.1| - 3e-07 30.5 1.5 0.018 15.0 0.1 2.6 2 2 0 2 2 2 2 RsgA GTPase cobW PF02492.19 gi|530549067|ref|YP_008429616.1| - 3.6e-07 29.9 0.3 5.4e-06 26.1 0.0 2.0 1 1 1 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain Arf PF00025.21 gi|530549067|ref|YP_008429616.1| - 9.4e-07 28.4 0.9 0.015 14.7 0.1 2.2 2 0 0 2 2 2 2 ADP-ribosylation factor family Roc PF08477.13 gi|530549067|ref|YP_008429616.1| - 2.1e-05 24.7 0.1 0.0064 16.7 0.0 2.3 2 0 0 2 2 2 1 Ras of Complex, Roc, domain of DAPkinase PduV-EutP PF10662.9 gi|530549067|ref|YP_008429616.1| - 2.8e-05 23.9 0.4 0.07 12.9 0.0 2.2 2 1 0 2 2 2 2 Ethanolamine utilisation - propanediol utilisation MMR_HSR1_Xtn PF16897.5 gi|530549067|ref|YP_008429616.1| - 0.00038 20.4 0.2 0.00067 19.6 0.2 1.4 1 1 0 1 1 1 1 C-terminal region of MMR_HSR1 domain Septin PF00735.18 gi|530549067|ref|YP_008429616.1| - 0.00055 19.3 0.8 0.009 15.3 0.8 2.3 1 1 0 1 1 1 1 Septin GBP PF02263.19 gi|530549067|ref|YP_008429616.1| - 0.0011 18.3 0.0 0.0017 17.6 0.0 1.3 1 0 0 1 1 1 1 Guanylate-binding protein, N-terminal domain Ras PF00071.22 gi|530549067|ref|YP_008429616.1| - 0.0036 16.9 0.1 0.033 13.8 0.1 2.2 1 1 0 1 1 1 1 Ras family AAA_28 PF13521.6 gi|530549067|ref|YP_008429616.1| - 0.0049 17.1 0.2 0.018 15.3 0.1 1.9 2 0 0 2 2 2 1 AAA domain ATP_bind_1 PF03029.17 gi|530549067|ref|YP_008429616.1| - 0.0057 16.5 0.0 0.2 11.4 0.0 2.4 2 1 0 2 2 2 1 Conserved hypothetical ATP binding protein ABC_tran PF00005.27 gi|530549067|ref|YP_008429616.1| - 0.023 15.2 0.5 0.03 14.8 0.5 1.5 1 1 0 1 1 1 0 ABC transporter AIG1 PF04548.16 gi|530549067|ref|YP_008429616.1| - 0.025 13.9 0.1 0.039 13.3 0.1 1.5 1 1 0 1 1 1 0 AIG1 family Gtr1_RagA PF04670.12 gi|530549067|ref|YP_008429616.1| - 0.04 13.3 0.6 0.051 12.9 0.6 1.4 1 1 0 1 1 1 0 Gtr1/RagA G protein conserved region AAA_29 PF13555.6 gi|530549067|ref|YP_008429616.1| - 0.091 12.5 0.1 0.17 11.6 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|530549067|ref|YP_008429616.1| - 0.093 12.4 0.0 0.12 12.1 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain AAA_22 PF13401.6 gi|530549067|ref|YP_008429616.1| - 0.11 12.8 0.3 0.41 10.9 0.3 1.9 1 1 0 1 1 1 0 AAA domain NOG1 PF06858.14 gi|530549067|ref|YP_008429616.1| - 0.11 12.3 2.8 0.34 10.7 0.6 2.5 2 1 0 2 2 2 0 Nucleolar GTP-binding protein 1 (NOG1) PB1 PF00564.24 gi|530549067|ref|YP_008429616.1| - 0.15 12.0 0.2 0.94 9.5 0.1 2.1 2 0 0 2 2 2 0 PB1 domain EcoEI_R_C PF08463.10 gi|530549068|ref|YP_008429617.1| - 0.00024 21.3 0.2 0.00038 20.6 0.2 1.4 1 1 0 1 1 1 1 EcoEI R protein C-terminal DUF2009 PF09418.10 gi|530549068|ref|YP_008429617.1| - 0.0017 17.5 1.0 0.0024 17.0 1.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2009) GCIP PF13324.6 gi|530549068|ref|YP_008429617.1| - 0.0024 17.5 1.2 0.0038 16.9 1.2 1.3 1 0 0 1 1 1 1 Grap2 and cyclin-D-interacting GAT PF03127.14 gi|530549068|ref|YP_008429617.1| - 0.01 16.1 2.3 0.076 13.3 0.2 2.6 1 1 1 2 2 2 0 GAT domain Fib_alpha PF08702.10 gi|530549068|ref|YP_008429617.1| - 0.011 15.9 6.0 0.013 15.6 4.7 1.7 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family Dynein_AAA_lid PF17852.1 gi|530549068|ref|YP_008429617.1| - 0.012 15.7 0.3 0.026 14.6 0.3 1.7 1 1 0 1 1 1 0 Dynein heavy chain AAA lid domain DASH_Duo1 PF08651.10 gi|530549068|ref|YP_008429617.1| - 0.047 13.5 1.2 0.14 11.9 1.1 2.0 1 1 0 1 1 1 0 DASH complex subunit Duo1 Cas_Cas1 PF01867.16 gi|530549068|ref|YP_008429617.1| - 0.063 12.4 0.7 0.11 11.6 0.7 1.4 1 0 0 1 1 1 0 CRISPR associated protein Cas1 HBM PF16591.5 gi|530549068|ref|YP_008429617.1| - 0.079 12.4 0.1 0.11 11.9 0.1 1.3 1 0 0 1 1 1 0 Helical bimodular sensor domain NADH_4Fe-4S PF10589.9 gi|530549068|ref|YP_008429617.1| - 0.083 13.0 0.2 0.38 10.9 0.0 2.2 1 1 1 2 2 2 0 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region FliS PF02561.14 gi|530549068|ref|YP_008429617.1| - 0.14 12.4 2.8 1.1 9.5 0.8 3.0 1 1 2 3 3 3 0 Flagellar protein FliS EppA_BapA PF07268.11 gi|530549068|ref|YP_008429617.1| - 0.3 11.0 5.1 2.8 7.9 0.3 3.2 2 1 0 3 3 3 0 Exported protein precursor (EppA/BapA) DUF2004 PF09406.10 gi|530549068|ref|YP_008429617.1| - 0.33 11.3 5.1 0.45 10.9 2.8 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2004) Herpes_UL6 PF01763.16 gi|530549068|ref|YP_008429617.1| - 0.34 9.4 2.2 0.38 9.2 1.7 1.3 1 1 0 1 1 1 0 Herpesvirus UL6 like DUF4238 PF14022.6 gi|530549068|ref|YP_008429617.1| - 0.39 10.2 4.4 3 7.3 3.9 2.2 1 1 0 1 1 1 0 Protein of unknown function (DUF4238) FlxA PF14282.6 gi|530549068|ref|YP_008429617.1| - 0.49 10.4 5.0 1.3 9.1 4.9 1.8 1 1 0 1 1 1 0 FlxA-like protein DNA_primase_lrg PF04104.14 gi|530549068|ref|YP_008429617.1| - 0.64 9.4 3.6 1.3 8.3 3.5 1.6 1 1 0 1 1 1 0 Eukaryotic and archaeal DNA primase, large subunit PCRF PF03462.18 gi|530549068|ref|YP_008429617.1| - 0.74 9.7 8.5 0.15 11.9 3.7 2.0 1 1 1 2 2 2 0 PCRF domain DUF4795 PF16043.5 gi|530549068|ref|YP_008429617.1| - 0.87 9.2 14.0 3 7.4 3.7 2.5 1 1 1 2 2 2 0 Domain of unknown function (DUF4795) YpjP PF14005.6 gi|530549068|ref|YP_008429617.1| - 0.89 9.6 8.1 0.72 9.9 5.6 2.1 1 1 0 2 2 2 0 YpjP-like protein HR1 PF02185.16 gi|530549068|ref|YP_008429617.1| - 0.98 9.6 8.1 2.4 8.3 7.7 2.0 1 1 0 1 1 1 0 Hr1 repeat COG2 PF06148.11 gi|530549068|ref|YP_008429617.1| - 1.4 9.0 7.0 4.9 7.3 5.0 2.4 1 1 2 3 3 3 0 COG (conserved oligomeric Golgi) complex component, COG2 DUF758 PF05527.11 gi|530549068|ref|YP_008429617.1| - 2.3 8.2 9.6 0.57 10.1 4.5 2.4 2 1 1 3 3 3 0 Domain of unknown function (DUF758) PP2C_C PF07830.13 gi|530549068|ref|YP_008429617.1| - 5.8 7.5 10.0 12 6.4 4.3 2.9 1 1 1 2 2 2 0 Protein serine/threonine phosphatase 2C, C-terminal domain Penicillinase_R PF03965.16 gi|530549069|ref|YP_008429618.1| - 0.00091 19.6 0.3 0.0017 18.7 0.1 1.5 2 0 0 2 2 2 1 Penicillinase repressor RP-C PF03428.13 gi|530549069|ref|YP_008429618.1| - 0.032 13.9 1.7 0.41 10.3 0.1 2.1 2 0 0 2 2 2 0 Replication protein C N-terminal domain AATF-Che1 PF13339.6 gi|530549069|ref|YP_008429618.1| - 0.035 14.8 0.0 0.062 14.0 0.0 1.4 1 1 0 1 1 1 0 Apoptosis antagonizing transcription factor DASH_Dad4 PF08650.10 gi|530549069|ref|YP_008429618.1| - 0.043 13.8 0.4 0.094 12.7 0.4 1.5 1 0 0 1 1 1 0 DASH complex subunit Dad4 Swi5 PF07061.11 gi|530549069|ref|YP_008429618.1| - 0.068 13.3 2.6 4.7 7.4 0.3 2.2 2 0 0 2 2 2 0 Swi5 PurL_C PF16904.5 gi|530549069|ref|YP_008429618.1| - 0.071 13.4 0.0 0.17 12.2 0.0 1.7 1 1 1 2 2 2 0 Phosphoribosylformylglycinamidine synthase II C-terminus GntR PF00392.21 gi|530549069|ref|YP_008429618.1| - 0.11 12.2 0.4 11 5.7 0.1 2.5 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family Syntaxin_2 PF14523.6 gi|530549069|ref|YP_008429618.1| - 0.11 12.9 1.0 13 6.2 0.2 2.2 2 0 0 2 2 2 0 Syntaxin-like protein HTH_11 PF08279.12 gi|530549069|ref|YP_008429618.1| - 0.13 12.3 1.0 0.81 9.7 0.3 2.6 2 2 0 2 2 2 0 HTH domain FlaC_arch PF05377.11 gi|530549069|ref|YP_008429618.1| - 0.16 12.4 0.6 0.16 12.4 0.6 1.9 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) Streptin-Immun PF11083.8 gi|530549069|ref|YP_008429618.1| - 0.27 11.7 2.6 0.23 11.9 0.5 1.9 2 1 0 2 2 2 0 Lantibiotic streptin immunity protein DUF257 PF03192.13 gi|530549070|ref|YP_008429619.1| - 1.5e-28 100.1 2.3 1.6e-28 99.9 2.3 1.0 1 0 0 1 1 1 1 Pyrococcus protein of unknown function, DUF257 UPF0047 PF01894.17 gi|530549071|ref|YP_008429620.1| - 6.1e-40 136.0 0.0 7.1e-40 135.8 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 Methyltransf_25 PF13649.6 gi|530549072|ref|YP_008429621.1| - 1e-07 32.5 0.1 1.8e-07 31.8 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|530549072|ref|YP_008429621.1| - 0.01 15.7 0.0 0.023 14.6 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|530549072|ref|YP_008429621.1| - 0.014 14.9 0.0 0.022 14.3 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase small domain GidB PF02527.15 gi|530549072|ref|YP_008429621.1| - 0.11 11.8 0.0 0.18 11.1 0.0 1.3 1 0 0 1 1 1 0 rRNA small subunit methyltransferase G UPF0020 PF01170.18 gi|530549073|ref|YP_008429622.1| - 7e-15 55.2 0.0 8.8e-13 48.4 0.0 3.4 2 1 0 2 2 2 1 Putative RNA methylase family UPF0020 N6_N4_Mtase PF01555.18 gi|530549073|ref|YP_008429622.1| - 3.3e-06 27.0 0.0 4.6e-05 23.2 0.0 2.2 2 1 0 2 2 2 1 DNA methylase Methyltransf_31 PF13847.6 gi|530549073|ref|YP_008429622.1| - 8.3e-05 22.4 0.0 0.00013 21.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|530549073|ref|YP_008429622.1| - 0.0017 18.2 0.0 0.0033 17.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.10 gi|530549073|ref|YP_008429622.1| - 0.013 15.1 0.0 0.02 14.5 0.0 1.3 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Cons_hypoth95 PF03602.15 gi|530549073|ref|YP_008429622.1| - 0.018 14.7 0.0 0.039 13.6 0.0 1.5 1 0 0 1 1 1 0 Conserved hypothetical protein 95 Methyltransf_12 PF08242.12 gi|530549073|ref|YP_008429622.1| - 0.026 15.2 0.0 0.15 12.8 0.0 2.0 2 0 0 2 2 2 0 Methyltransferase domain MTS PF05175.14 gi|530549073|ref|YP_008429622.1| - 0.033 13.7 0.0 0.057 13.0 0.0 1.4 1 1 0 1 1 1 0 Methyltransferase small domain AviRa PF11599.8 gi|530549073|ref|YP_008429622.1| - 0.041 13.3 0.0 0.066 12.7 0.0 1.3 1 0 0 1 1 1 0 RRNA methyltransferase AviRa Methyltransf_11 PF08241.12 gi|530549073|ref|YP_008429622.1| - 0.056 14.1 0.0 0.49 11.1 0.0 2.1 2 0 0 2 2 2 0 Methyltransferase domain MethyltransfD12 PF02086.15 gi|530549073|ref|YP_008429622.1| - 0.059 13.0 0.0 0.2 11.3 0.0 1.9 3 0 0 3 3 3 0 D12 class N6 adenine-specific DNA methyltransferase Methyltransf_5 PF01795.19 gi|530549073|ref|YP_008429622.1| - 0.096 12.2 0.0 0.23 10.9 0.0 1.6 2 0 0 2 2 2 0 MraW methylase family HEM4 PF02602.15 gi|530549073|ref|YP_008429622.1| - 0.16 11.3 0.0 0.31 10.4 0.0 1.4 1 0 0 1 1 1 0 Uroporphyrinogen-III synthase HemD PIN PF01850.21 gi|530549074|ref|YP_008429623.1| - 9.4e-17 61.7 1.6 1e-16 61.5 1.6 1.0 1 0 0 1 1 1 1 PIN domain PIN_3 PF13470.6 gi|530549074|ref|YP_008429623.1| - 0.00044 21.0 0.0 0.00054 20.7 0.0 1.1 1 0 0 1 1 1 1 PIN domain DUF4411 PF14367.6 gi|530549074|ref|YP_008429623.1| - 0.032 14.1 0.0 0.039 13.9 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4411) MazE_antitoxin PF04014.18 gi|530549075|ref|YP_008429624.1| - 1.4e-12 47.2 2.2 2e-12 46.7 2.2 1.3 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin AbrB-like PF14250.6 gi|530549075|ref|YP_008429624.1| - 0.0095 16.0 0.0 0.013 15.6 0.0 1.2 1 0 0 1 1 1 1 AbrB-like transcriptional regulator CDC48_N PF02359.18 gi|530549075|ref|YP_008429624.1| - 0.034 14.3 0.0 0.042 14.0 0.0 1.1 1 0 0 1 1 1 0 Cell division protein 48 (CDC48), N-terminal domain GTP_EFTU_D2 PF03144.25 gi|530549075|ref|YP_008429624.1| - 0.052 13.9 0.2 0.18 12.2 0.1 1.9 2 1 0 2 2 2 0 Elongation factor Tu domain 2 ThiS PF02597.20 gi|530549075|ref|YP_008429624.1| - 0.066 13.9 0.8 0.82 10.4 0.1 2.2 2 1 0 2 2 2 0 ThiS family PALP PF00291.25 gi|530549076|ref|YP_008429625.1| - 1.8e-66 224.6 1.5 2.1e-66 224.3 1.5 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme HypA PF01155.19 gi|530549076|ref|YP_008429625.1| - 0.015 15.3 0.3 0.027 14.5 0.3 1.4 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_2 PF13240.6 gi|530549076|ref|YP_008429625.1| - 0.03 14.0 3.4 0.14 11.9 3.6 2.0 1 1 0 1 1 1 0 zinc-ribbon domain DZR PF12773.7 gi|530549076|ref|YP_008429625.1| - 0.071 13.1 0.6 0.12 12.4 0.6 1.3 1 0 0 1 1 1 0 Double zinc ribbon Prok-RING_1 PF14446.6 gi|530549076|ref|YP_008429625.1| - 0.095 12.6 0.5 0.2 11.6 0.5 1.5 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 C1_2 PF03107.16 gi|530549076|ref|YP_008429625.1| - 0.2 12.0 0.5 0.33 11.3 0.5 1.3 1 0 0 1 1 1 0 C1 domain Zn_Tnp_IS1595 PF12760.7 gi|530549076|ref|YP_008429625.1| - 0.3 11.1 1.6 0.88 9.6 1.6 1.7 1 0 0 1 1 1 0 Transposase zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|530549076|ref|YP_008429625.1| - 0.75 10.0 3.4 3.7 7.8 3.2 2.1 1 1 0 1 1 1 0 Zinc ribbon domain Desulfoferrod_N PF06397.12 gi|530549076|ref|YP_008429625.1| - 4 7.1 6.2 6.7 6.4 1.1 2.7 1 1 0 2 2 2 0 Desulfoferrodoxin, N-terminal domain DUF3093 PF11292.8 gi|530549077|ref|YP_008429626.1| - 0.06 13.6 0.1 0.11 12.8 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3093) NfeD PF01957.18 gi|530549078|ref|YP_008429627.1| - 4.7e-15 55.7 2.4 4.7e-15 55.7 2.4 1.4 2 0 0 2 2 2 1 NfeD-like C-terminal, partner-binding DUF1624 PF07786.12 gi|530549079|ref|YP_008429628.1| - 7.1e-68 228.5 13.3 8.2e-68 228.3 13.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1624) OpgC_C PF10129.9 gi|530549079|ref|YP_008429628.1| - 1.3 7.8 17.7 0.53 9.1 4.8 3.1 1 1 2 3 3 3 0 OpgC protein DUF3675 PF12428.8 gi|530549080|ref|YP_008429629.1| - 0.74 10.4 4.7 1.7 9.2 4.7 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3675) Radical_SAM PF04055.21 gi|530549081|ref|YP_008429630.1| - 7.7e-12 45.9 0.2 1.9e-11 44.6 0.0 1.7 2 0 0 2 2 2 1 Radical SAM superfamily DUF5131 PF07505.11 gi|530549081|ref|YP_008429630.1| - 0.073 12.5 0.5 0.16 11.4 0.5 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF5131) DUF1848 PF08902.11 gi|530549081|ref|YP_008429630.1| - 1.8 8.2 9.3 11 5.6 5.3 2.8 2 1 0 2 2 2 0 Domain of unknown function (DUF1848) Peptidase_M23 PF01551.22 gi|530549082|ref|YP_008429631.1| - 0.049 13.8 0.0 0.11 12.7 0.0 1.6 2 0 0 2 2 2 0 Peptidase family M23 E1_dh PF00676.20 gi|530549083|ref|YP_008429632.1| - 1.1e-84 283.9 0.0 1.4e-84 283.6 0.0 1.1 1 0 0 1 1 1 1 Dehydrogenase E1 component DXP_synthase_N PF13292.6 gi|530549083|ref|YP_008429632.1| - 7.2e-09 35.2 0.2 1.5e-08 34.2 0.2 1.6 1 0 0 1 1 1 1 1-deoxy-D-xylulose-5-phosphate synthase TPP_enzyme_C PF02775.21 gi|530549083|ref|YP_008429632.1| - 6.7e-08 32.5 1.8 8e-07 29.0 1.2 2.7 2 1 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Transketolase_N PF00456.21 gi|530549083|ref|YP_008429632.1| - 0.00098 18.2 0.0 0.0017 17.4 0.0 1.3 1 0 0 1 1 1 1 Transketolase, thiamine diphosphate binding domain SpoVS PF04232.12 gi|530549083|ref|YP_008429632.1| - 0.096 12.4 0.3 0.26 11.0 0.3 1.7 1 0 0 1 1 1 0 Stage V sporulation protein S (SpoVS) Transket_pyr PF02779.24 gi|530549084|ref|YP_008429633.1| - 4e-48 163.4 0.2 1e-47 162.1 0.2 1.7 2 0 0 2 2 2 1 Transketolase, pyrimidine binding domain Transketolase_C PF02780.20 gi|530549084|ref|YP_008429633.1| - 1.1e-39 135.2 0.3 1.7e-39 134.5 0.3 1.3 1 0 0 1 1 1 1 Transketolase, C-terminal domain PFOR_II PF17147.4 gi|530549084|ref|YP_008429633.1| - 0.00074 19.8 0.7 0.0024 18.2 0.1 2.0 2 0 0 2 2 2 1 Pyruvate:ferredoxin oxidoreductase core domain II Biotin_lipoyl PF00364.22 gi|530549085|ref|YP_008429634.1| - 1.2e-13 50.7 7.1 1.7e-13 50.2 6.9 1.4 1 1 0 1 1 1 1 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.6 gi|530549085|ref|YP_008429634.1| - 2.4e-07 30.5 1.6 0.011 15.5 0.3 2.2 1 1 1 2 2 2 2 Biotin-lipoyl like RnfC_N PF13375.6 gi|530549085|ref|YP_008429634.1| - 0.00025 21.0 0.8 0.0015 18.4 0.8 2.0 1 1 0 1 1 1 1 RnfC Barrel sandwich hybrid domain QRPTase_N PF02749.16 gi|530549085|ref|YP_008429634.1| - 0.0052 16.8 0.2 0.17 12.0 0.1 2.1 1 1 1 2 2 2 1 Quinolinate phosphoribosyl transferase, N-terminal domain Peptidase_M23 PF01551.22 gi|530549085|ref|YP_008429634.1| - 0.031 14.5 0.6 6.5 7.0 0.1 2.4 1 1 2 3 3 3 0 Peptidase family M23 BPL_LplA_LipB PF03099.19 gi|530549086|ref|YP_008429635.1| - 1.1e-09 38.3 0.0 1.6e-09 37.7 0.0 1.3 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family NAD_kinase PF01513.21 gi|530549087|ref|YP_008429636.1| - 3.3e-13 49.5 0.2 4.4e-12 45.8 0.1 2.1 2 0 0 2 2 2 1 ATP-NAD kinase DAGK_cat PF00781.24 gi|530549087|ref|YP_008429636.1| - 1.3e-06 28.1 0.5 8.1e-06 25.5 0.3 2.1 2 0 0 2 2 2 1 Diacylglycerol kinase catalytic domain Lin0512_fam PF09585.10 gi|530549088|ref|YP_008429637.1| - 1.4e-32 112.1 0.1 1.6e-32 111.9 0.1 1.0 1 0 0 1 1 1 1 Conserved hypothetical protein (Lin0512_fam) 2-oxoacid_dh PF00198.23 gi|530549089|ref|YP_008429638.1| - 4e-79 265.4 0.1 4.6e-79 265.1 0.1 1.0 1 0 0 1 1 1 1 2-oxoacid dehydrogenases acyltransferase (catalytic domain) E3_binding PF02817.17 gi|530549089|ref|YP_008429638.1| - 3.3e-08 33.7 0.0 8.6e-08 32.4 0.0 1.7 1 0 0 1 1 1 1 e3 binding domain VasI PF11319.8 gi|530549089|ref|YP_008429638.1| - 0.17 11.5 0.1 0.29 10.8 0.1 1.4 1 0 0 1 1 1 0 Type VI secretion system VasI, EvfG, VC_A0118 Biotin_lipoyl PF00364.22 gi|530549090|ref|YP_008429639.1| - 1.6e-17 63.1 7.3 1.8e-17 62.9 7.3 1.0 1 0 0 1 1 1 1 Biotin-requiring enzyme GCV_H PF01597.19 gi|530549090|ref|YP_008429639.1| - 6.5e-07 29.3 3.1 1.9e-06 27.7 2.0 1.9 1 1 1 2 2 2 1 Glycine cleavage H-protein Biotin_lipoyl_2 PF13533.6 gi|530549090|ref|YP_008429639.1| - 1.8e-05 24.4 0.2 0.09 12.6 0.0 2.1 1 1 1 2 2 2 2 Biotin-lipoyl like HlyD_3 PF13437.6 gi|530549090|ref|YP_008429639.1| - 0.00014 22.5 1.4 0.059 14.1 0.1 2.1 1 1 1 2 2 2 2 HlyD family secretion protein PYNP_C PF07831.13 gi|530549090|ref|YP_008429639.1| - 0.0015 18.1 1.5 0.56 9.9 0.2 2.3 1 1 1 2 2 2 2 Pyrimidine nucleoside phosphorylase C-terminal domain RnfC_N PF13375.6 gi|530549090|ref|YP_008429639.1| - 0.013 15.5 0.4 0.1 12.6 0.4 1.9 1 1 0 1 1 1 0 RnfC Barrel sandwich hybrid domain DUF2118 PF09891.9 gi|530549090|ref|YP_008429639.1| - 0.016 15.2 0.2 0.19 11.7 0.2 2.0 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2118) HlyD_D23 PF16576.5 gi|530549090|ref|YP_008429639.1| - 0.067 12.4 0.2 5.5 6.1 0.0 2.0 1 1 1 2 2 2 0 Barrel-sandwich domain of CusB or HlyD membrane-fusion E1_dh PF00676.20 gi|530549091|ref|YP_008429640.1| - 8.4e-96 320.4 0.0 9.9e-96 320.2 0.0 1.0 1 0 0 1 1 1 1 Dehydrogenase E1 component TPP_enzyme_C PF02775.21 gi|530549091|ref|YP_008429640.1| - 1.5e-08 34.5 2.9 3.2e-07 30.3 2.9 2.2 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Transketolase_N PF00456.21 gi|530549091|ref|YP_008429640.1| - 0.00089 18.3 0.0 0.0014 17.7 0.0 1.2 1 0 0 1 1 1 1 Transketolase, thiamine diphosphate binding domain DXP_synthase_N PF13292.6 gi|530549091|ref|YP_008429640.1| - 0.047 12.9 0.1 0.11 11.6 0.1 1.7 1 1 0 1 1 1 0 1-deoxy-D-xylulose-5-phosphate synthase DUF1451 PF07295.11 gi|530549091|ref|YP_008429640.1| - 0.061 13.3 0.1 0.11 12.6 0.1 1.3 1 0 0 1 1 1 0 Zinc-ribbon containing domain Transket_pyr PF02779.24 gi|530549092|ref|YP_008429641.1| - 7e-53 178.9 0.0 9.8e-53 178.5 0.0 1.2 1 0 0 1 1 1 1 Transketolase, pyrimidine binding domain Transketolase_C PF02780.20 gi|530549092|ref|YP_008429641.1| - 5.2e-42 142.7 0.7 1.3e-41 141.3 0.2 1.9 2 0 0 2 2 2 1 Transketolase, C-terminal domain PFOR_II PF17147.4 gi|530549092|ref|YP_008429641.1| - 0.0002 21.6 0.1 0.00053 20.2 0.1 1.7 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Ribosomal_S22 PF08136.11 gi|530549092|ref|YP_008429641.1| - 0.018 15.4 0.0 10 6.5 0.0 2.4 2 0 0 2 2 2 0 30S ribosomal protein subunit S22 family Rpp20 PF12328.8 gi|530549092|ref|YP_008429641.1| - 0.038 14.0 0.0 0.079 12.9 0.0 1.5 1 0 0 1 1 1 0 Rpp20 subunit of nuclear RNase MRP and P Aldolase PF01081.19 gi|530549093|ref|YP_008429642.1| - 0.013 15.0 0.1 0.015 14.7 0.1 1.2 1 0 0 1 1 1 0 KDPG and KHG aldolase OsmC PF02566.19 gi|530549094|ref|YP_008429643.1| - 4.4e-22 78.5 0.0 4.6e-21 75.2 0.0 1.9 2 0 0 2 2 2 1 OsmC-like protein OB_aCoA_assoc PF01796.17 gi|530549094|ref|YP_008429643.1| - 0.075 13.0 0.1 0.12 12.4 0.1 1.3 1 0 0 1 1 1 0 DUF35 OB-fold domain, acyl-CoA-associated FmdA_AmdA PF03069.15 gi|530549095|ref|YP_008429644.1| - 6.6e-55 186.5 0.0 1.3e-53 182.2 0.0 2.0 1 1 0 1 1 1 1 Acetamidase/Formamidase family Prok-RING_1 PF14446.6 gi|530549095|ref|YP_008429644.1| - 0.046 13.7 0.9 0.087 12.8 0.9 1.4 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 tRNA-synt_1g PF09334.11 gi|530549095|ref|YP_008429644.1| - 0.05 12.3 0.0 0.09 11.5 0.0 1.4 1 1 0 1 1 1 0 tRNA synthetases class I (M) DNA_RNApol_7kD PF03604.13 gi|530549095|ref|YP_008429644.1| - 0.071 12.8 0.9 0.14 11.8 0.9 1.5 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit zf-ribbon_3 PF13248.6 gi|530549095|ref|YP_008429644.1| - 0.13 11.8 3.0 6 6.4 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain DZR PF12773.7 gi|530549095|ref|YP_008429644.1| - 0.15 12.1 0.2 0.29 11.2 0.2 1.4 1 0 0 1 1 1 0 Double zinc ribbon Zn-ribbon_8 PF09723.10 gi|530549095|ref|YP_008429644.1| - 0.52 10.5 3.1 1.5 9.0 3.0 1.8 1 1 1 2 2 2 0 Zinc ribbon domain PALP PF00291.25 gi|530549097|ref|YP_008429646.1| - 4.6e-44 151.0 0.3 5.7e-44 150.7 0.3 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme MazE_antitoxin PF04014.18 gi|530549098|ref|YP_008429647.1| - 5.1e-15 55.0 0.8 7.1e-15 54.5 0.8 1.2 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin PrlF_antitoxin PF15937.5 gi|530549098|ref|YP_008429647.1| - 3.2e-07 30.7 0.1 4.8e-07 30.1 0.1 1.3 1 1 0 1 1 1 1 prlF antitoxin for toxin YhaV_toxin DUF1905 PF08922.11 gi|530549098|ref|YP_008429647.1| - 0.012 15.6 0.0 0.023 14.8 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF1905) PIN PF01850.21 gi|530549099|ref|YP_008429648.1| - 8.4e-16 58.6 0.3 9.5e-16 58.4 0.3 1.0 1 0 0 1 1 1 1 PIN domain PIN_9 PF18477.1 gi|530549099|ref|YP_008429648.1| - 0.00039 20.7 0.0 0.063 13.6 0.0 2.1 1 1 0 1 1 1 1 PIN like domain PIN_4 PF13638.6 gi|530549099|ref|YP_008429648.1| - 0.0019 18.5 0.0 0.031 14.6 0.0 2.2 1 1 0 1 1 1 1 PIN domain PIN_12 PF16289.5 gi|530549099|ref|YP_008429648.1| - 0.0082 16.7 0.1 0.014 15.9 0.1 1.6 1 1 0 1 1 1 1 PIN domain PIN_5 PF08745.11 gi|530549099|ref|YP_008429648.1| - 0.075 12.4 0.1 1.3 8.4 0.0 2.2 1 1 0 2 2 2 0 PINc domain ribonuclease Lactamase_B PF00753.27 gi|530549100|ref|YP_008429649.1| - 2e-32 112.8 0.8 2.3e-32 112.6 0.8 1.1 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_5 PF14597.6 gi|530549100|ref|YP_008429649.1| - 3.7e-11 42.9 0.0 5.2e-11 42.4 0.0 1.3 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|530549100|ref|YP_008429649.1| - 1.3e-06 28.1 0.0 1.6e-06 27.8 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|530549100|ref|YP_008429649.1| - 0.00069 19.6 0.1 0.0018 18.2 0.1 1.8 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 gi|530549100|ref|YP_008429649.1| - 0.002 17.6 0.0 0.0031 17.0 0.0 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily domain FGAR-AT_linker PF18072.1 gi|530549100|ref|YP_008429649.1| - 0.09 13.3 0.2 1.5 9.4 0.0 2.3 2 0 0 2 2 2 0 Formylglycinamide ribonucleotide amidotransferase linker domain HTH_5 PF01022.20 gi|530549101|ref|YP_008429650.1| - 1.9e-14 53.3 0.3 4.3e-14 52.1 0.3 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|530549101|ref|YP_008429650.1| - 8.6e-12 44.9 0.2 1.9e-11 43.8 0.2 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain ArsR PF09824.9 gi|530549101|ref|YP_008429650.1| - 8.8e-06 25.4 0.4 0.018 14.6 0.0 2.3 2 0 0 2 2 2 2 ArsR transcriptional regulator PadR PF03551.14 gi|530549101|ref|YP_008429650.1| - 6.7e-05 22.8 0.1 0.00053 19.9 0.1 2.5 1 1 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_24 PF13412.6 gi|530549101|ref|YP_008429650.1| - 0.00027 20.4 2.0 0.0041 16.7 2.0 2.6 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|530549101|ref|YP_008429650.1| - 0.00031 20.6 0.1 0.00071 19.4 0.1 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|530549101|ref|YP_008429650.1| - 0.00047 20.0 0.1 0.00094 19.0 0.1 1.5 1 0 0 1 1 1 1 MarR family HTH_CodY PF08222.11 gi|530549101|ref|YP_008429650.1| - 0.00063 19.2 0.0 0.0032 17.0 0.0 2.0 2 0 0 2 2 2 1 CodY helix-turn-helix domain HTH_11 PF08279.12 gi|530549101|ref|YP_008429650.1| - 0.0049 16.8 0.8 0.014 15.3 0.1 2.1 2 0 0 2 2 2 1 HTH domain HTH_10 PF04967.12 gi|530549101|ref|YP_008429650.1| - 0.0071 16.1 0.3 0.035 13.9 0.0 2.3 3 0 0 3 3 3 1 HTH DNA binding domain PCRF PF03462.18 gi|530549101|ref|YP_008429650.1| - 0.025 14.5 6.4 0.033 14.0 6.4 1.1 1 0 0 1 1 1 0 PCRF domain DUF2513 PF10711.9 gi|530549101|ref|YP_008429650.1| - 0.029 14.7 0.7 0.42 10.9 0.0 2.4 2 0 0 2 2 2 0 Hypothetical protein (DUF2513) FliJ PF02050.16 gi|530549101|ref|YP_008429650.1| - 0.039 14.2 5.9 0.067 13.4 5.9 1.3 1 0 0 1 1 1 0 Flagellar FliJ protein IF2_N PF04760.15 gi|530549101|ref|YP_008429650.1| - 0.039 13.8 1.0 0.085 12.7 0.1 2.0 2 0 0 2 2 2 0 Translation initiation factor IF-2, N-terminal region HxlR PF01638.17 gi|530549101|ref|YP_008429650.1| - 0.041 13.7 3.0 0.054 13.3 0.1 2.5 2 1 0 3 3 3 0 HxlR-like helix-turn-helix GntR PF00392.21 gi|530549101|ref|YP_008429650.1| - 0.046 13.4 0.6 0.28 10.8 0.1 2.4 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family Apolipoprotein PF01442.18 gi|530549101|ref|YP_008429650.1| - 0.054 13.4 4.5 0.076 12.9 4.5 1.2 1 0 0 1 1 1 0 Apolipoprotein A1/A4/E domain SRP1_TIP1 PF00660.17 gi|530549101|ref|YP_008429650.1| - 0.062 13.4 0.0 0.1 12.7 0.0 1.3 1 0 0 1 1 1 0 Seripauperin and TIP1 family Prominin PF05478.11 gi|530549101|ref|YP_008429650.1| - 0.068 11.1 0.9 0.087 10.8 0.9 1.1 1 0 0 1 1 1 0 Prominin HTH_34 PF13601.6 gi|530549101|ref|YP_008429650.1| - 0.069 13.3 0.0 0.21 11.8 0.0 1.8 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF2383 PF09537.10 gi|530549101|ref|YP_008429650.1| - 0.069 13.5 1.1 0.12 12.8 1.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF2383) SchA_CurD PF04486.12 gi|530549101|ref|YP_008429650.1| - 0.099 12.8 0.1 0.17 12.0 0.1 1.5 1 0 0 1 1 1 0 SchA/CurD like domain Med4 PF10018.9 gi|530549101|ref|YP_008429650.1| - 0.12 12.0 3.8 0.11 12.2 2.9 1.4 1 1 0 1 1 1 0 Vitamin-D-receptor interacting Mediator subunit 4 MCPsignal PF00015.21 gi|530549101|ref|YP_008429650.1| - 0.22 11.3 0.2 0.33 10.7 0.2 1.2 1 0 0 1 1 1 0 Methyl-accepting chemotaxis protein (MCP) signalling domain DUF2205 PF10224.9 gi|530549101|ref|YP_008429650.1| - 0.47 10.5 5.7 0.57 10.2 4.8 1.6 1 1 0 1 1 1 0 Short coiled-coil protein XhlA PF10779.9 gi|530549101|ref|YP_008429650.1| - 8.2 6.7 8.0 1.1 9.6 0.7 2.8 2 1 1 3 3 3 0 Haemolysin XhlA Ribosomal_S17e PF00833.18 gi|530549102|ref|YP_008429651.1| - 1e-15 57.7 0.6 1.2e-15 57.5 0.6 1.0 1 0 0 1 1 1 1 Ribosomal S17 DUF371 PF04027.13 gi|530549105|ref|YP_008429654.1| - 2.9e-52 176.2 1.6 3.2e-52 176.0 1.6 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF371) Mating_C PF12737.7 gi|530549105|ref|YP_008429654.1| - 1.5 7.9 2.8 9.7 5.3 0.2 2.0 2 0 0 2 2 2 0 C-terminal domain of homeodomain 1 AAA_14 PF13173.6 gi|530549106|ref|YP_008429655.1| - 1.9e-11 44.1 0.0 2.5e-09 37.2 0.0 2.4 1 1 0 1 1 1 1 AAA domain ATPase_2 PF01637.18 gi|530549106|ref|YP_008429655.1| - 3.7e-10 40.1 0.0 7.6e-10 39.1 0.0 1.4 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_16 PF13191.6 gi|530549106|ref|YP_008429655.1| - 2.9e-07 31.0 0.2 7.8e-07 29.6 0.1 1.8 2 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|530549106|ref|YP_008429655.1| - 8.7e-05 22.8 0.0 0.00019 21.7 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|530549106|ref|YP_008429655.1| - 0.0035 17.8 0.0 0.0079 16.6 0.0 1.6 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RsgA_GTPase PF03193.16 gi|530549106|ref|YP_008429655.1| - 0.014 15.3 0.0 0.027 14.4 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase TrmB PF01978.19 gi|530549106|ref|YP_008429655.1| - 0.041 13.8 0.0 0.14 12.0 0.0 1.9 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Clathrin_H_link PF13838.6 gi|530549106|ref|YP_008429655.1| - 0.067 13.1 0.0 0.16 11.9 0.0 1.6 1 0 0 1 1 1 0 Clathrin-H-link CobA_CobO_BtuR PF02572.15 gi|530549106|ref|YP_008429655.1| - 0.074 13.3 0.0 0.12 12.7 0.0 1.3 1 0 0 1 1 1 0 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP AAA_35 PF14516.6 gi|530549106|ref|YP_008429655.1| - 0.16 10.8 0.0 0.36 9.6 0.0 1.7 1 0 0 1 1 1 0 AAA-like domain Roc PF08477.13 gi|530549106|ref|YP_008429655.1| - 0.19 12.0 0.0 0.46 10.7 0.0 1.6 1 0 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase DUF4147 PF13660.6 gi|530549107|ref|YP_008429656.1| - 3.4e-82 275.4 0.1 4.9e-82 274.9 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4147) MOFRL PF05161.13 gi|530549107|ref|YP_008429656.1| - 1.4e-35 121.8 1.0 4e-35 120.3 1.0 1.8 1 0 0 1 1 1 1 MOFRL family AA_kinase PF00696.28 gi|530549108|ref|YP_008429657.1| - 1.3e-45 155.9 0.0 1.7e-45 155.5 0.0 1.1 1 0 0 1 1 1 1 Amino acid kinase family GHMP_kinases_N PF00288.26 gi|530549109|ref|YP_008429658.1| - 4e-13 49.4 1.2 1.2e-12 47.9 1.2 1.9 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|530549109|ref|YP_008429658.1| - 2.8e-12 46.8 0.0 7e-12 45.6 0.0 1.7 1 0 0 1 1 1 1 GHMP kinases C terminal PALP PF00291.25 gi|530549110|ref|YP_008429659.1| - 6.2e-80 268.8 0.0 7.1e-80 268.6 0.0 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Semialdhyde_dh PF01118.24 gi|530549111|ref|YP_008429660.1| - 4e-30 104.7 0.0 7.3e-30 103.9 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.18 gi|530549111|ref|YP_008429660.1| - 7.7e-26 91.3 0.0 1.3e-25 90.5 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain Gp_dh_C PF02800.20 gi|530549111|ref|YP_008429660.1| - 0.0079 15.8 0.0 0.017 14.7 0.0 1.5 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DapB_N PF01113.20 gi|530549111|ref|YP_008429660.1| - 0.014 15.5 0.0 0.031 14.4 0.0 1.6 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus Sacchrp_dh_NADP PF03435.18 gi|530549111|ref|YP_008429660.1| - 0.028 14.7 0.0 0.069 13.4 0.0 1.7 2 0 0 2 2 2 0 Saccharopine dehydrogenase NADP binding domain GFO_IDH_MocA PF01408.22 gi|530549111|ref|YP_008429660.1| - 0.039 14.8 0.0 0.076 13.8 0.0 1.5 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold DXP_reductoisom PF02670.16 gi|530549111|ref|YP_008429660.1| - 0.056 14.1 0.0 0.21 12.3 0.0 2.0 2 0 0 2 2 2 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase Epimerase PF01370.21 gi|530549111|ref|YP_008429660.1| - 0.16 11.4 0.0 0.22 10.9 0.0 1.2 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family tRNA_SAD PF07973.14 gi|530549112|ref|YP_008429661.1| - 8.3e-05 22.6 0.1 0.00017 21.6 0.1 1.5 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain TK PF00265.18 gi|530549113|ref|YP_008429662.1| - 2.4e-54 183.9 0.0 2.7e-54 183.7 0.0 1.0 1 0 0 1 1 1 1 Thymidine kinase AAA_14 PF13173.6 gi|530549113|ref|YP_008429662.1| - 0.0035 17.4 0.1 0.0063 16.5 0.1 1.4 1 1 0 1 1 1 1 AAA domain zf-C4_ClpX PF06689.13 gi|530549113|ref|YP_008429662.1| - 0.019 14.8 0.0 0.044 13.7 0.0 1.6 1 0 0 1 1 1 0 ClpX C4-type zinc finger CBFD_NFYB_HMF PF00808.23 gi|530549114|ref|YP_008429663.1| - 9.9e-21 73.8 2.9 1.1e-20 73.7 2.9 1.0 1 0 0 1 1 1 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Histone PF00125.24 gi|530549114|ref|YP_008429663.1| - 8.2e-10 39.2 0.4 9.2e-10 39.0 0.4 1.1 1 0 0 1 1 1 1 Core histone H2A/H2B/H3/H4 TAF PF02969.17 gi|530549114|ref|YP_008429663.1| - 1.7e-07 31.3 0.6 1.8e-07 31.2 0.6 1.1 1 0 0 1 1 1 1 TATA box binding protein associated factor (TAF) CENP-S PF15630.6 gi|530549114|ref|YP_008429663.1| - 1.7e-05 25.1 0.1 1.8e-05 25.0 0.1 1.1 1 0 0 1 1 1 1 CENP-S protein CENP-T_C PF15511.6 gi|530549114|ref|YP_008429663.1| - 2.1e-05 24.6 0.2 2.2e-05 24.5 0.2 1.1 1 0 0 1 1 1 1 Centromere kinetochore component CENP-T histone fold TFIID-31kDa PF02291.15 gi|530549114|ref|YP_008429663.1| - 0.00021 21.3 0.0 0.00023 21.2 0.0 1.1 1 0 0 1 1 1 1 Transcription initiation factor IID, 31kD subunit TFIID-18kDa PF02269.16 gi|530549114|ref|YP_008429663.1| - 0.00044 20.2 0.0 0.00048 20.1 0.0 1.1 1 0 0 1 1 1 1 Transcription initiation factor IID, 18kD subunit TFIID_20kDa PF03847.13 gi|530549114|ref|YP_008429663.1| - 0.0017 18.8 0.2 0.0018 18.7 0.2 1.1 1 0 0 1 1 1 1 Transcription initiation factor TFIID subunit A DUF1931 PF09123.11 gi|530549114|ref|YP_008429663.1| - 0.0018 18.4 0.6 0.0022 18.1 0.6 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1931) Bromo_TP PF07524.13 gi|530549114|ref|YP_008429663.1| - 0.11 12.6 0.0 0.11 12.5 0.0 1.1 1 0 0 1 1 1 0 Bromodomain associated CaM_bdg_C0 PF10562.9 gi|530549114|ref|YP_008429663.1| - 0.4 10.8 0.3 0.4 10.8 0.3 2.1 1 1 0 2 2 2 0 Calmodulin-binding domain C0 of NMDA receptor NR1 subunit Radical_SAM PF04055.21 gi|530549115|ref|YP_008429664.1| - 5e-27 95.3 0.1 1e-26 94.3 0.0 1.6 2 0 0 2 2 2 1 Radical SAM superfamily B12-binding PF02310.19 gi|530549115|ref|YP_008429664.1| - 1.4e-11 44.5 0.0 2.5e-11 43.7 0.0 1.4 1 0 0 1 1 1 1 B12 binding domain Metallophos_2 PF12850.7 gi|530549116|ref|YP_008429665.1| - 1.7e-32 112.9 0.0 2e-32 112.7 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|530549116|ref|YP_008429665.1| - 1.4e-15 58.4 0.1 1.7e-15 58.1 0.1 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_3 PF14582.6 gi|530549116|ref|YP_008429665.1| - 0.0012 18.3 0.1 0.65 9.3 0.0 2.4 2 1 0 2 2 2 2 Metallophosphoesterase, calcineurin superfamily NAGLU_N PF12971.7 gi|530549116|ref|YP_008429665.1| - 0.1 12.4 0.0 0.18 11.6 0.0 1.4 1 0 0 1 1 1 0 Alpha-N-acetylglucosaminidase (NAGLU) N-terminal domain Sua5_yciO_yrdC PF01300.18 gi|530549117|ref|YP_008429666.1| - 9.9e-46 155.5 0.0 1.6e-45 154.8 0.0 1.3 1 0 0 1 1 1 1 Telomere recombination zf-HYPF PF07503.12 gi|530549117|ref|YP_008429666.1| - 7.3e-32 108.8 19.7 1.6e-16 59.8 2.8 2.4 2 0 0 2 2 2 2 HypF finger HypF_C PF17788.1 gi|530549117|ref|YP_008429666.1| - 1e-29 103.2 0.2 2.1e-29 102.2 0.2 1.5 1 0 0 1 1 1 1 HypF Kae1-like domain Acylphosphatase PF00708.18 gi|530549117|ref|YP_008429666.1| - 2.6e-27 95.0 0.2 1.7e-25 89.2 0.1 2.9 2 0 0 2 2 2 1 Acylphosphatase Peptidase_M22 PF00814.25 gi|530549117|ref|YP_008429666.1| - 2.7e-06 27.3 0.1 9.2e-05 22.3 0.0 2.2 2 0 0 2 2 2 1 Glycoprotease family Carbam_trans_N PF02543.15 gi|530549117|ref|YP_008429666.1| - 0.0029 17.3 1.1 0.027 14.1 1.1 2.1 1 1 0 1 1 1 1 Carbamoyltransferase N-terminus NMD3 PF04981.13 gi|530549117|ref|YP_008429666.1| - 0.36 10.2 4.9 0.3 10.5 0.2 2.2 1 1 0 2 2 2 0 NMD3 family AIRS_C PF02769.22 gi|530549118|ref|YP_008429667.1| - 6.4e-32 110.8 1.3 8.7e-32 110.4 1.3 1.2 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|530549118|ref|YP_008429667.1| - 1.1e-17 64.5 0.2 2.3e-17 63.4 0.2 1.6 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain SurE PF01975.17 gi|530549118|ref|YP_008429667.1| - 0.13 12.0 0.0 0.23 11.2 0.0 1.3 1 0 0 1 1 1 0 Survival protein SurE AsnC_trans_reg PF01037.21 gi|530549119|ref|YP_008429668.1| - 1.2e-09 38.0 0.1 1.4e-09 37.8 0.1 1.1 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain AsnC_trans_reg2 PF17805.1 gi|530549119|ref|YP_008429668.1| - 0.044 13.9 0.0 0.05 13.8 0.0 1.0 1 0 0 1 1 1 0 AsnC-like ligand binding domain AsnC_trans_reg PF01037.21 gi|530549120|ref|YP_008429669.1| - 2.6e-17 62.5 0.2 3.8e-17 62.0 0.2 1.3 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_24 PF13412.6 gi|530549120|ref|YP_008429669.1| - 2.6e-13 49.3 0.2 4.9e-13 48.4 0.2 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|530549120|ref|YP_008429669.1| - 1.8e-11 43.7 0.1 2.8e-11 43.0 0.1 1.3 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.12 gi|530549120|ref|YP_008429669.1| - 2.5e-08 33.7 1.1 9.8e-05 22.2 0.1 2.2 2 0 0 2 2 2 2 HTH domain MarR PF01047.22 gi|530549120|ref|YP_008429669.1| - 2e-07 30.8 0.1 4.7e-07 29.6 0.1 1.7 1 0 0 1 1 1 1 MarR family HTH_Mga PF08280.11 gi|530549120|ref|YP_008429669.1| - 3.1e-07 30.3 1.2 0.00073 19.5 0.1 2.2 2 0 0 2 2 2 2 M protein trans-acting positive regulator (MGA) HTH domain HTH_20 PF12840.7 gi|530549120|ref|YP_008429669.1| - 7.6e-05 22.7 0.0 0.00012 22.1 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|530549120|ref|YP_008429669.1| - 9.7e-05 22.2 0.1 0.00021 21.1 0.0 1.6 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_19 PF12844.7 gi|530549120|ref|YP_008429669.1| - 0.00013 21.9 0.8 0.00036 20.5 0.8 1.9 1 1 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|530549120|ref|YP_008429669.1| - 0.0018 18.1 0.0 0.004 17.0 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 gi|530549120|ref|YP_008429669.1| - 0.0022 17.9 0.0 0.0056 16.6 0.0 1.7 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_DeoR PF08220.12 gi|530549120|ref|YP_008429669.1| - 0.0026 17.5 0.5 0.12 12.2 0.0 2.2 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain HTH_30 PF13556.6 gi|530549120|ref|YP_008429669.1| - 0.0059 16.4 0.0 0.011 15.6 0.0 1.4 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain HTH_IclR PF09339.10 gi|530549120|ref|YP_008429669.1| - 0.0069 16.2 0.0 0.012 15.4 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_1 PF00126.27 gi|530549120|ref|YP_008429669.1| - 0.0079 16.1 0.0 0.025 14.5 0.0 1.8 2 1 0 2 2 2 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_12 PF08461.10 gi|530549120|ref|YP_008429669.1| - 0.0094 15.9 1.2 0.025 14.5 0.2 2.2 2 1 0 2 2 2 1 Ribonuclease R winged-helix domain HTH_Tnp_IS630 PF01710.16 gi|530549120|ref|YP_008429669.1| - 0.011 15.7 0.1 0.023 14.7 0.1 1.5 1 0 0 1 1 1 0 Transposase HTH_28 PF13518.6 gi|530549120|ref|YP_008429669.1| - 0.017 15.2 0.0 0.077 13.1 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_10 PF04967.12 gi|530549120|ref|YP_008429669.1| - 0.021 14.6 0.0 0.042 13.7 0.0 1.4 1 0 0 1 1 1 0 HTH DNA binding domain HTH_31 PF13560.6 gi|530549120|ref|YP_008429669.1| - 0.024 15.0 0.0 0.038 14.3 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|530549120|ref|YP_008429669.1| - 0.052 13.2 0.0 0.12 12.0 0.0 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_3 PF01381.22 gi|530549120|ref|YP_008429669.1| - 0.073 13.1 0.1 0.2 11.8 0.0 1.8 1 1 0 1 1 1 0 Helix-turn-helix DUF501 PF04417.12 gi|530549120|ref|YP_008429669.1| - 0.12 12.2 0.0 0.23 11.2 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF501) Aminotran_1_2 PF00155.21 gi|530549121|ref|YP_008429670.1| - 2.4e-60 204.6 0.0 2.7e-60 204.5 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Rsbr_N PF08678.10 gi|530549121|ref|YP_008429670.1| - 0.0046 17.0 1.2 0.017 15.2 0.3 2.2 2 1 0 2 2 2 1 Rsbr N terminal Cys_Met_Meta_PP PF01053.20 gi|530549121|ref|YP_008429670.1| - 0.0057 15.2 0.0 0.0085 14.7 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.21 gi|530549121|ref|YP_008429670.1| - 0.008 15.5 0.1 0.026 13.8 0.0 1.7 2 0 0 2 2 2 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.17 gi|530549121|ref|YP_008429670.1| - 0.04 13.2 0.0 0.065 12.5 0.0 1.3 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family RQC PF09382.10 gi|530549121|ref|YP_008429670.1| - 0.083 12.7 0.3 0.31 10.8 0.0 2.0 2 0 0 2 2 2 0 RQC domain FdtA PF05523.11 gi|530549121|ref|YP_008429670.1| - 0.11 12.3 0.1 0.29 10.9 0.0 1.7 1 1 1 2 2 2 0 WxcM-like, C-terminal TctC PF03401.14 gi|530549122|ref|YP_008429671.1| - 2.7e-43 148.0 0.0 3.5e-43 147.6 0.0 1.1 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter family receptor SBP_bac_3 PF00497.20 gi|530549122|ref|YP_008429671.1| - 0.15 11.5 0.0 0.65 9.4 0.0 2.0 1 1 1 2 2 2 0 Bacterial extracellular solute-binding proteins, family 3 TctC PF03401.14 gi|530549123|ref|YP_008429672.1| - 0.0003 20.0 0.0 0.00031 19.9 0.0 1.0 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter family receptor TctB PF07331.11 gi|530549124|ref|YP_008429673.1| - 4.7e-13 49.6 25.0 7.8e-13 48.9 25.0 1.3 1 1 0 1 1 1 1 Tripartite tricarboxylate transporter TctB family Promethin PF16015.5 gi|530549124|ref|YP_008429673.1| - 0.0092 15.9 13.2 0.0092 15.9 13.2 2.3 2 1 0 2 2 2 1 Promethin TctA PF01970.16 gi|530549125|ref|YP_008429674.1| - 4.9e-128 427.3 43.0 6e-128 427.1 43.0 1.1 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter TctA family PfkB PF00294.24 gi|530549126|ref|YP_008429675.1| - 1.6e-50 172.2 0.0 2e-50 171.8 0.0 1.2 1 0 0 1 1 1 1 pfkB family carbohydrate kinase DHDPS PF00701.22 gi|530549127|ref|YP_008429676.1| - 3.7e-83 278.6 0.0 4.1e-83 278.4 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family DUF61 PF01886.16 gi|530549127|ref|YP_008429676.1| - 0.22 11.6 1.1 0.36 10.9 0.1 1.8 2 0 0 2 2 2 0 Protein of unknown function DUF61 Fe-ADH PF00465.19 gi|530549128|ref|YP_008429677.1| - 7.1e-112 373.8 0.0 8.6e-112 373.6 0.0 1.0 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH_2 PF13685.6 gi|530549128|ref|YP_008429677.1| - 4.8e-19 69.0 0.9 1.9e-10 40.9 0.2 2.1 2 0 0 2 2 2 2 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.20 gi|530549128|ref|YP_008429677.1| - 0.12 11.6 0.0 4.1 6.5 0.1 2.8 3 1 0 3 3 3 0 3-dehydroquinate synthase Peptidase_M24 PF00557.24 gi|530549131|ref|YP_008429680.1| - 2.1e-44 151.8 0.0 2.3e-44 151.6 0.0 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 ATP-cone PF03477.16 gi|530549131|ref|YP_008429680.1| - 0.00032 21.2 0.1 0.66 10.6 0.0 2.4 2 0 0 2 2 2 2 ATP cone domain TrkH PF02386.16 gi|530549132|ref|YP_008429681.1| - 2.8e-66 224.0 24.5 2.2e-65 221.1 24.5 1.9 1 1 0 1 1 1 1 Cation transport protein ABC_tran PF00005.27 gi|530549133|ref|YP_008429682.1| - 8.2e-27 94.4 0.0 1.2e-26 93.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|530549133|ref|YP_008429682.1| - 3.1e-07 30.1 0.2 1.3e-05 24.8 0.2 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain TniB PF05621.11 gi|530549133|ref|YP_008429682.1| - 4.7e-05 22.9 0.2 0.0092 15.4 0.0 3.0 2 1 1 3 3 3 1 Bacterial TniB protein AAA_21 PF13304.6 gi|530549133|ref|YP_008429682.1| - 0.0001 22.2 4.7 0.0028 17.5 0.1 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|530549133|ref|YP_008429682.1| - 0.00066 20.0 0.2 0.0088 16.3 0.2 2.4 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|530549133|ref|YP_008429682.1| - 0.0056 16.4 0.2 0.012 15.3 0.2 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|530549133|ref|YP_008429682.1| - 0.012 16.0 0.0 0.022 15.2 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain ABC_ATPase PF09818.9 gi|530549133|ref|YP_008429682.1| - 0.015 14.1 0.3 0.26 10.0 0.0 2.5 2 1 0 2 2 2 0 Predicted ATPase of the ABC class AAA_24 PF13479.6 gi|530549133|ref|YP_008429682.1| - 0.016 14.9 0.1 1.4 8.6 0.1 2.2 2 0 0 2 2 2 0 AAA domain ATPase PF06745.13 gi|530549133|ref|YP_008429682.1| - 0.029 13.7 0.5 3.8 6.8 0.2 2.3 2 0 0 2 2 2 0 KaiC RsgA_GTPase PF03193.16 gi|530549133|ref|YP_008429682.1| - 0.085 12.8 0.1 0.17 11.8 0.1 1.5 1 0 0 1 1 1 0 RsgA GTPase DUF87 PF01935.17 gi|530549133|ref|YP_008429682.1| - 0.53 10.3 2.7 1.9 8.5 0.3 2.5 3 0 0 3 3 3 0 Helicase HerA, central domain CYTH PF01928.21 gi|530549134|ref|YP_008429683.1| - 2.8e-32 112.1 7.2 3.2e-32 111.9 7.2 1.0 1 0 0 1 1 1 1 CYTH domain LMP PF04778.12 gi|530549134|ref|YP_008429683.1| - 0.026 14.5 1.1 0.029 14.3 0.2 1.6 2 0 0 2 2 2 0 LMP repeated region PUB PF09409.10 gi|530549134|ref|YP_008429683.1| - 0.043 13.8 0.2 0.14 12.1 0.1 2.0 2 0 0 2 2 2 0 PUB domain Nas2_N PF18265.1 gi|530549134|ref|YP_008429683.1| - 0.24 11.4 2.0 6.1 6.8 0.1 2.6 2 1 0 2 2 2 0 Nas2 N_terminal domain Peptidase_M54 PF07998.11 gi|530549135|ref|YP_008429684.1| - 1.5e-05 25.1 0.1 4.8e-05 23.4 0.1 1.7 1 1 0 1 1 1 1 Peptidase family M54 SpoIISA_toxin PF14171.6 gi|530549135|ref|YP_008429684.1| - 0.048 13.4 0.0 0.055 13.2 0.0 1.1 1 0 0 1 1 1 0 Toxin SpoIISA, type II toxin-antitoxin system DUF86 PF01934.17 gi|530549136|ref|YP_008429685.1| - 6.5e-15 55.0 0.8 7.8e-15 54.8 0.8 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF86 DUF5355 PF17306.2 gi|530549136|ref|YP_008429685.1| - 0.0017 17.5 2.6 0.002 17.2 2.6 1.1 1 0 0 1 1 1 1 Family of unknown function (DUF5355) Lipoprotein_Ltp PF07553.11 gi|530549136|ref|YP_008429685.1| - 0.051 13.8 0.1 5.9 7.2 0.0 2.6 2 0 0 2 2 2 0 Host cell surface-exposed lipoprotein Peptidase_M42 PF05343.14 gi|530549137|ref|YP_008429686.1| - 5.5e-101 337.4 0.3 6.3e-101 337.2 0.3 1.0 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.28 gi|530549137|ref|YP_008429686.1| - 5.8e-08 32.7 0.1 1.4e-07 31.4 0.1 1.7 1 1 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M18 PF02127.15 gi|530549137|ref|YP_008429686.1| - 7.8e-05 21.6 0.2 0.0061 15.4 0.0 2.6 2 1 1 3 3 3 2 Aminopeptidase I zinc metalloprotease (M18) Peptidase_M28 PF04389.17 gi|530549137|ref|YP_008429686.1| - 0.0031 17.2 0.8 0.42 10.3 0.0 2.4 2 1 0 2 2 2 2 Peptidase family M28 Chlam_OMP6 PF03504.13 gi|530549138|ref|YP_008429687.1| - 0.0086 16.3 0.0 0.009 16.3 0.0 1.2 1 0 0 1 1 1 1 Chlamydia cysteine-rich outer membrane protein 6 DUF2674 PF10879.8 gi|530549138|ref|YP_008429687.1| - 0.1 12.2 0.1 0.17 11.5 0.1 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF2674) Big_1 PF02369.16 gi|530549139|ref|YP_008429688.1| - 1.5e-07 31.3 1.5 0.0058 16.6 0.1 3.1 3 0 0 3 3 3 2 Bacterial Ig-like domain (group 1) CarboxypepD_reg PF13620.6 gi|530549139|ref|YP_008429688.1| - 4.2e-07 30.1 6.6 0.00051 20.2 0.5 3.4 4 0 0 4 4 4 2 Carboxypeptidase regulatory-like domain CARDB PF07705.11 gi|530549139|ref|YP_008429688.1| - 1.2e-05 25.5 0.1 4e-05 23.8 0.0 1.9 2 0 0 2 2 2 1 CARDB MG4 PF17789.1 gi|530549139|ref|YP_008429688.1| - 9.9e-05 22.4 0.2 1.2 9.3 0.0 3.5 3 0 0 3 3 3 2 Macroglobulin domain MG4 Invasin_D3 PF09134.10 gi|530549139|ref|YP_008429688.1| - 0.00032 20.9 1.2 0.42 11.0 0.0 2.8 1 1 1 2 2 2 2 Invasin, domain 3 NPCBM_assoc PF10633.9 gi|530549139|ref|YP_008429688.1| - 0.0013 18.9 0.0 0.03 14.6 0.0 3.3 4 1 0 4 4 4 1 NPCBM-associated, NEW3 domain of alpha-galactosidase Coatamer_beta_C PF07718.12 gi|530549139|ref|YP_008429688.1| - 0.0077 16.1 0.1 0.018 15.0 0.1 1.7 1 0 0 1 1 1 1 Coatomer beta C-terminal region DUF11 PF01345.18 gi|530549139|ref|YP_008429688.1| - 0.016 15.5 0.0 0.14 12.5 0.0 2.6 3 0 0 3 3 2 0 Domain of unknown function DUF11 DUF824 PF05688.11 gi|530549139|ref|YP_008429688.1| - 0.035 13.9 0.3 20 5.1 0.0 3.3 4 0 0 4 4 4 0 Salmonella repeat of unknown function (DUF824) DUF3244 PF11589.8 gi|530549139|ref|YP_008429688.1| - 0.071 13.2 3.3 14 5.8 0.0 4.3 4 1 1 5 5 5 0 Domain of unknown function (DUF3244) GSDH PF07995.11 gi|530549139|ref|YP_008429688.1| - 0.09 12.1 0.0 0.15 11.4 0.0 1.2 1 0 0 1 1 1 0 Glucose / Sorbosone dehydrogenase Cohesin PF00963.18 gi|530549139|ref|YP_008429688.1| - 0.13 12.5 0.1 0.13 12.5 0.1 3.2 3 1 0 3 3 3 0 Cohesin domain Big_3_5 PF16640.5 gi|530549139|ref|YP_008429688.1| - 0.4 10.9 2.6 16 5.7 0.5 3.4 4 0 0 4 4 4 0 Bacterial Ig-like domain (group 3) DPBB_1 PF03330.18 gi|530549140|ref|YP_008429689.1| - 0.096 13.0 0.0 0.098 12.9 0.0 1.0 1 0 0 1 1 1 0 Lytic transglycolase Hjc PF01870.18 gi|530549141|ref|YP_008429690.1| - 1.5e-29 101.8 0.3 1.7e-29 101.7 0.3 1.0 1 0 0 1 1 1 1 Archaeal holliday junction resolvase (hjc) UPF0102 PF02021.17 gi|530549141|ref|YP_008429690.1| - 0.00025 21.2 0.1 0.00031 20.9 0.1 1.2 1 0 0 1 1 1 1 Uncharacterised protein family UPF0102 HicA_toxin PF07927.12 gi|530549141|ref|YP_008429690.1| - 0.0019 18.2 0.1 0.0038 17.2 0.1 1.5 1 0 0 1 1 1 1 HicA toxin of bacterial toxin-antitoxin, Smr PF01713.21 gi|530549141|ref|YP_008429690.1| - 0.013 15.9 0.1 0.017 15.5 0.1 1.1 1 0 0 1 1 1 0 Smr domain DUF3883 PF13020.6 gi|530549141|ref|YP_008429690.1| - 0.048 13.7 0.1 0.058 13.4 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3883) PDDEXK_4 PF14281.6 gi|530549141|ref|YP_008429690.1| - 0.083 13.0 0.0 0.083 13.0 0.0 1.1 1 0 0 1 1 1 0 PD-(D/E)XK nuclease superfamily Hexapep PF00132.24 gi|530549142|ref|YP_008429691.1| - 2.1e-18 65.2 15.7 1.6e-08 33.9 6.2 4.2 3 1 1 4 4 4 4 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|530549142|ref|YP_008429691.1| - 5.3e-06 26.1 13.1 3.2e-05 23.6 2.9 3.5 4 0 0 4 4 4 2 Hexapeptide repeat of succinyl-transferase HupF_HypC PF01455.18 gi|530549142|ref|YP_008429691.1| - 0.68 10.1 5.4 6.5 7.0 0.9 3.5 2 1 1 3 3 3 0 HupF/HypC family Prenyltransf PF01255.19 gi|530549143|ref|YP_008429692.1| - 4.2e-81 271.8 0.1 4.8e-81 271.5 0.1 1.0 1 0 0 1 1 1 1 Putative undecaprenyl diphosphate synthase Seryl_tRNA_N PF02403.22 gi|530549143|ref|YP_008429692.1| - 0.013 15.7 0.2 0.027 14.7 0.1 1.5 1 1 0 1 1 1 0 Seryl-tRNA synthetase N-terminal domain GTP_EFTU PF00009.27 gi|530549144|ref|YP_008429693.1| - 1e-64 217.7 0.0 1.6e-64 217.1 0.0 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 gi|530549144|ref|YP_008429693.1| - 2.8e-27 94.9 0.1 1.9e-26 92.2 0.0 2.4 3 0 0 3 3 3 1 Elongation factor G, domain IV EFG_II PF14492.6 gi|530549144|ref|YP_008429693.1| - 1.5e-25 89.1 0.3 3e-25 88.1 0.3 1.6 1 0 0 1 1 1 1 Elongation Factor G, domain II EFG_C PF00679.24 gi|530549144|ref|YP_008429693.1| - 1.8e-24 85.6 0.0 7.3e-24 83.6 0.0 2.1 1 0 0 1 1 1 1 Elongation factor G C-terminus GTP_EFTU_D2 PF03144.25 gi|530549144|ref|YP_008429693.1| - 3.1e-15 56.3 0.7 7.3e-15 55.1 0.7 1.7 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|530549144|ref|YP_008429693.1| - 0.0026 17.8 0.0 0.0071 16.4 0.0 1.8 1 0 0 1 1 1 1 50S ribosome-binding GTPase RF3_C PF16658.5 gi|530549144|ref|YP_008429693.1| - 0.0068 16.2 0.0 0.016 15.0 0.0 1.6 1 0 0 1 1 1 1 Class II release factor RF3, C-terminal domain DUF2283 PF10049.9 gi|530549144|ref|YP_008429693.1| - 0.11 12.7 0.0 0.41 10.9 0.0 2.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2283) tRNA-synt_2 PF00152.20 gi|530549145|ref|YP_008429694.1| - 2.3e-44 151.8 0.0 2.6e-44 151.6 0.0 1.0 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA-synt_2d PF01409.20 gi|530549145|ref|YP_008429694.1| - 0.07 12.6 0.2 1.5 8.2 0.0 2.7 3 0 0 3 3 3 0 tRNA synthetases class II core domain (F) SQHop_cyclase_C PF13243.6 gi|530549146|ref|YP_008429695.1| - 1.8e-05 24.0 0.0 0.0025 17.0 0.0 2.2 2 0 0 2 2 2 2 Squalene-hopene cyclase C-terminal domain TED_complement PF07678.14 gi|530549146|ref|YP_008429695.1| - 0.025 13.6 0.1 2.9 6.8 0.1 2.2 2 0 0 2 2 2 0 A-macroglobulin TED domain Prenyltrans PF00432.21 gi|530549146|ref|YP_008429695.1| - 0.1 12.4 0.0 4.2 7.2 0.0 3.1 3 0 0 3 3 3 0 Prenyltransferase and squalene oxidase repeat DUF2270 PF10028.9 gi|530549146|ref|YP_008429695.1| - 0.13 11.9 0.0 0.24 11.0 0.0 1.4 1 0 0 1 1 1 0 Predicted integral membrane protein (DUF2270) Nitroreductase PF00881.24 gi|530549147|ref|YP_008429696.1| - 2e-31 109.3 1.1 1e-16 61.4 0.2 2.1 1 1 1 2 2 2 2 Nitroreductase family TM1586_NiRdase PF14512.6 gi|530549147|ref|YP_008429696.1| - 1e-14 54.7 0.9 0.00015 21.4 0.0 3.3 1 1 2 3 3 3 3 Putative TM nitroreductase Pyr_redox_2 PF07992.14 gi|530549148|ref|YP_008429697.1| - 2.7e-41 141.8 2.0 4.7e-41 140.9 2.0 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Fer4_20 PF14691.6 gi|530549148|ref|YP_008429697.1| - 2.2e-23 82.2 4.3 8.7e-19 67.4 0.0 2.6 2 0 0 2 2 2 2 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Pyr_redox_3 PF13738.6 gi|530549148|ref|YP_008429697.1| - 1.1e-19 70.8 1.2 4.9e-14 52.3 0.1 2.7 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|530549148|ref|YP_008429697.1| - 1.3e-18 67.3 5.9 8e-11 42.3 0.7 3.4 3 0 0 3 3 2 2 Pyridine nucleotide-disulphide oxidoreductase Fer2_4 PF13510.6 gi|530549148|ref|YP_008429697.1| - 1.9e-11 43.9 0.0 6e-11 42.2 0.0 2.0 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain NAD_binding_8 PF13450.6 gi|530549148|ref|YP_008429697.1| - 3.8e-11 43.0 0.3 2.7e-09 37.1 0.0 3.2 4 0 0 4 4 2 1 NAD(P)-binding Rossmann-like domain NAD_binding_7 PF13241.6 gi|530549148|ref|YP_008429697.1| - 5.3e-09 36.5 0.5 2.7e-05 24.5 0.0 3.0 3 0 0 3 3 2 2 Putative NAD(P)-binding FAD_oxidored PF12831.7 gi|530549148|ref|YP_008429697.1| - 2.7e-08 33.6 1.6 8.3e-06 25.4 0.0 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase AlaDh_PNT_C PF01262.21 gi|530549148|ref|YP_008429697.1| - 2.4e-07 30.3 0.4 0.0017 17.7 0.1 2.4 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain DAO PF01266.24 gi|530549148|ref|YP_008429697.1| - 4.6e-07 29.7 4.3 4.4e-05 23.2 0.1 3.5 4 0 0 4 4 3 1 FAD dependent oxidoreductase PALP PF00291.25 gi|530549148|ref|YP_008429697.1| - 2.3e-06 27.2 0.0 0.018 14.4 0.0 2.5 3 0 0 3 3 3 2 Pyridoxal-phosphate dependent enzyme FAD_binding_2 PF00890.24 gi|530549148|ref|YP_008429697.1| - 2.8e-06 26.7 1.6 3.2e-05 23.2 0.1 2.6 3 0 0 3 3 3 1 FAD binding domain Oxidored_nitro PF00148.19 gi|530549148|ref|YP_008429697.1| - 3.8e-06 25.9 0.4 0.034 12.9 0.2 3.1 3 0 0 3 3 3 2 Nitrogenase component 1 type Oxidoreductase HI0933_like PF03486.14 gi|530549148|ref|YP_008429697.1| - 6.1e-06 25.2 1.1 5.4e-05 22.1 0.1 2.2 2 0 0 2 2 2 1 HI0933-like protein 2-Hacid_dh_C PF02826.19 gi|530549148|ref|YP_008429697.1| - 9.2e-06 25.1 0.1 0.02 14.3 0.1 2.5 2 0 0 2 2 2 2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FAD_binding_3 PF01494.19 gi|530549148|ref|YP_008429697.1| - 1.1e-05 24.9 1.4 0.00047 19.5 0.2 2.2 2 0 0 2 2 2 1 FAD binding domain Amino_oxidase PF01593.24 gi|530549148|ref|YP_008429697.1| - 5.4e-05 22.7 0.0 0.00038 19.9 0.0 2.2 3 0 0 3 3 2 1 Flavin containing amine oxidoreductase GIDA PF01134.22 gi|530549148|ref|YP_008429697.1| - 7.7e-05 21.9 1.7 0.05 12.7 0.2 3.2 3 0 0 3 3 3 1 Glucose inhibited division protein A XdhC_C PF13478.6 gi|530549148|ref|YP_008429697.1| - 0.00013 22.5 0.0 0.089 13.3 0.0 2.4 2 0 0 2 2 2 1 XdhC Rossmann domain Thi4 PF01946.17 gi|530549148|ref|YP_008429697.1| - 0.00019 20.7 0.6 0.00038 19.8 0.0 1.7 2 0 0 2 2 2 1 Thi4 family TrkA_N PF02254.18 gi|530549148|ref|YP_008429697.1| - 0.0011 19.2 2.6 3.3 8.0 0.0 4.2 5 0 0 5 5 3 1 TrkA-N domain FMO-like PF00743.19 gi|530549148|ref|YP_008429697.1| - 0.0014 17.2 0.0 0.24 9.8 0.0 2.1 2 0 0 2 2 2 1 Flavin-binding monooxygenase-like F420_oxidored PF03807.17 gi|530549148|ref|YP_008429697.1| - 0.0019 18.7 0.3 1.8 9.2 0.1 3.6 2 1 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent Molybdop_Fe4S4 PF04879.16 gi|530549148|ref|YP_008429697.1| - 0.0026 17.7 3.4 0.024 14.6 0.7 2.9 2 0 0 2 2 2 1 Molybdopterin oxidoreductase Fe4S4 domain NADH-G_4Fe-4S_3 PF10588.9 gi|530549148|ref|YP_008429697.1| - 0.007 15.9 2.8 0.024 14.2 0.0 2.6 2 0 0 2 2 2 1 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Fer4 PF00037.27 gi|530549148|ref|YP_008429697.1| - 0.025 14.4 1.0 0.025 14.4 1.0 4.7 5 0 0 5 5 4 0 4Fe-4S binding domain K_oxygenase PF13434.6 gi|530549148|ref|YP_008429697.1| - 0.029 13.5 0.0 0.48 9.5 0.0 2.1 2 0 0 2 2 2 0 L-lysine 6-monooxygenase (NADPH-requiring) IlvN PF07991.12 gi|530549148|ref|YP_008429697.1| - 0.035 13.7 0.0 0.78 9.3 0.0 2.4 2 0 0 2 2 2 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain Lycopene_cycl PF05834.12 gi|530549148|ref|YP_008429697.1| - 0.035 13.1 0.3 0.11 11.6 0.1 1.8 2 0 0 2 2 2 0 Lycopene cyclase protein 3HCDH_N PF02737.18 gi|530549148|ref|YP_008429697.1| - 0.042 13.7 1.3 2.2 8.1 0.2 2.5 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Shikimate_DH PF01488.20 gi|530549148|ref|YP_008429697.1| - 0.065 13.3 0.1 1.5 8.9 0.1 2.5 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase GPP34 PF05719.11 gi|530549148|ref|YP_008429697.1| - 0.077 13.0 0.3 0.17 11.9 0.0 1.6 2 0 0 2 2 1 0 Golgi phosphoprotein 3 (GPP34) YjeF_N PF03853.15 gi|530549148|ref|YP_008429697.1| - 0.08 12.8 0.1 14 5.5 0.0 2.4 2 0 0 2 2 2 0 YjeF-related protein N-terminus DFP PF04127.15 gi|530549148|ref|YP_008429697.1| - 0.11 12.3 2.2 2.2 8.1 0.1 2.6 3 0 0 3 3 2 0 DNA / pantothenate metabolism flavoprotein ELFV_dehydrog PF00208.21 gi|530549148|ref|YP_008429697.1| - 0.15 11.8 0.8 8.3 6.1 0.2 2.8 3 0 0 3 3 3 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Fer4_15 PF13459.6 gi|530549148|ref|YP_008429697.1| - 0.16 12.7 3.2 0.39 11.5 0.7 3.1 2 1 0 2 2 1 0 4Fe-4S single cluster domain AdoHcyase_NAD PF00670.21 gi|530549148|ref|YP_008429697.1| - 0.21 11.7 3.1 0.93 9.5 0.2 3.0 3 0 0 3 3 2 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Fer4_10 PF13237.6 gi|530549148|ref|YP_008429697.1| - 1.6 8.9 14.8 2.2 8.4 0.5 4.7 4 0 0 4 4 4 0 4Fe-4S dicluster domain Complex1_51K PF01512.17 gi|530549149|ref|YP_008429698.1| - 3.6e-51 173.0 0.0 1e-50 171.6 0.0 1.8 2 0 0 2 2 1 1 Respiratory-chain NADH dehydrogenase 51 Kd subunit NADH_4Fe-4S PF10589.9 gi|530549149|ref|YP_008429698.1| - 1.5e-32 111.5 0.0 1.5e-32 111.5 0.0 2.8 3 0 0 3 3 3 1 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Fer4 PF00037.27 gi|530549149|ref|YP_008429698.1| - 5.3e-11 41.9 15.9 2.7e-07 30.1 3.1 3.9 4 0 0 4 4 4 2 4Fe-4S binding domain SLBB PF10531.9 gi|530549149|ref|YP_008429698.1| - 9e-09 35.1 0.7 1.7e-08 34.2 0.7 1.5 1 0 0 1 1 1 1 SLBB domain Fer4_7 PF12838.7 gi|530549149|ref|YP_008429698.1| - 2.9e-07 31.0 15.4 3.3e-07 30.8 10.4 2.9 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|530549149|ref|YP_008429698.1| - 1e-05 25.5 13.5 1e-05 25.5 13.5 3.4 2 2 1 3 3 3 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|530549149|ref|YP_008429698.1| - 1.3e-05 25.2 14.1 1.3e-05 25.2 14.1 2.8 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|530549149|ref|YP_008429698.1| - 1.3e-05 25.0 16.7 0.00013 21.8 4.2 4.5 5 0 0 5 5 5 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|530549149|ref|YP_008429698.1| - 1.7e-05 24.9 26.0 0.0015 18.6 3.3 3.9 4 0 0 4 4 4 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|530549149|ref|YP_008429698.1| - 9.8e-05 22.2 25.1 0.0062 16.6 3.0 4.3 3 1 0 3 3 3 2 4Fe-4S binding domain 2Fe-2S_thioredx PF01257.19 gi|530549149|ref|YP_008429698.1| - 0.00014 21.7 0.1 0.00049 20.0 0.1 1.9 2 0 0 2 2 2 1 Thioredoxin-like [2Fe-2S] ferredoxin Suc_Fer-like PF06999.12 gi|530549149|ref|YP_008429698.1| - 0.0073 16.2 0.1 0.013 15.4 0.1 1.4 1 0 0 1 1 1 1 Sucrase/ferredoxin-like Fer4_4 PF12800.7 gi|530549149|ref|YP_008429698.1| - 0.0078 16.7 23.1 0.05 14.1 3.6 3.5 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|530549149|ref|YP_008429698.1| - 0.018 15.9 21.1 0.03 15.3 5.1 3.7 2 1 1 3 3 3 0 4Fe-4S double cluster binding domain Fer4_8 PF13183.6 gi|530549149|ref|YP_008429698.1| - 0.74 10.3 21.5 0.27 11.7 1.1 3.3 2 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|530549149|ref|YP_008429698.1| - 2.3 8.8 21.0 0.6 10.7 3.9 3.4 3 0 0 3 3 3 0 4Fe-4S single cluster domain of Ferredoxin I 2Fe-2S_thioredx PF01257.19 gi|530549150|ref|YP_008429699.1| - 7.3e-54 181.6 0.0 8.5e-54 181.4 0.0 1.0 1 0 0 1 1 1 1 Thioredoxin-like [2Fe-2S] ferredoxin Fer4_22 PF17179.4 gi|530549151|ref|YP_008429700.1| - 1.1e-24 87.1 13.5 2.5e-24 85.9 13.5 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|530549151|ref|YP_008429700.1| - 2.8e-05 24.1 16.9 0.0012 18.9 0.3 2.8 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|530549151|ref|YP_008429700.1| - 0.00052 20.1 15.8 0.064 13.4 16.2 2.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|530549151|ref|YP_008429700.1| - 0.00065 20.1 14.3 0.011 16.1 15.0 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|530549151|ref|YP_008429700.1| - 0.0012 18.8 10.8 0.0057 16.7 1.7 3.2 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|530549151|ref|YP_008429700.1| - 0.0014 19.2 18.1 0.029 15.0 2.7 2.9 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|530549151|ref|YP_008429700.1| - 0.004 17.3 15.7 0.14 12.3 0.6 2.6 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|530549151|ref|YP_008429700.1| - 0.017 14.9 3.7 0.017 14.9 3.7 3.2 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_16 PF13484.6 gi|530549151|ref|YP_008429700.1| - 0.038 14.9 19.0 0.13 13.3 3.0 2.9 1 1 1 2 2 2 0 4Fe-4S double cluster binding domain Fer4_6 PF12837.7 gi|530549151|ref|YP_008429700.1| - 0.073 13.2 20.9 0.081 13.0 4.4 3.3 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_17 PF13534.6 gi|530549151|ref|YP_008429700.1| - 0.074 13.6 19.8 1.4 9.5 19.8 2.5 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|530549151|ref|YP_008429700.1| - 2.7 8.7 20.6 0.4 11.3 2.8 3.2 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_3 PF12798.7 gi|530549151|ref|YP_008429700.1| - 3.5 8.8 23.8 2.7 9.1 3.5 3.6 2 1 1 3 3 3 0 4Fe-4S binding domain DHODB_Fe-S_bind PF10418.9 gi|530549152|ref|YP_008429701.1| - 1e-13 50.8 2.1 3.2e-13 49.2 2.1 1.8 1 0 0 1 1 1 1 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B NAD_binding_1 PF00175.21 gi|530549152|ref|YP_008429701.1| - 1.1e-13 51.8 0.0 2e-13 50.9 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase NAD-binding domain FAD_binding_6 PF00970.24 gi|530549152|ref|YP_008429701.1| - 3.1e-09 37.1 0.0 5.2e-09 36.3 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase FAD-binding domain FAD_binding_8 PF08022.12 gi|530549152|ref|YP_008429701.1| - 0.0073 16.4 0.0 0.017 15.2 0.0 1.6 1 1 0 1 1 1 1 FAD-binding domain NAD_binding_6 PF08030.12 gi|530549152|ref|YP_008429701.1| - 0.029 14.5 0.0 0.23 11.6 0.0 2.0 2 0 0 2 2 2 0 Ferric reductase NAD binding domain tRNA_anti-codon PF01336.25 gi|530549152|ref|YP_008429701.1| - 0.16 11.9 0.0 0.4 10.7 0.0 1.6 1 0 0 1 1 1 0 OB-fold nucleic acid binding domain Oxidored_q6 PF01058.22 gi|530549153|ref|YP_008429702.1| - 1e-23 83.6 0.0 1.5e-23 83.1 0.0 1.3 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit NiFeSe_Hases PF00374.19 gi|530549154|ref|YP_008429703.1| - 9.6e-35 120.4 0.0 1.2e-18 67.3 0.0 2.7 1 1 2 3 3 3 2 Nickel-dependent hydrogenase DUF257 PF03192.13 gi|530549155|ref|YP_008429704.1| - 6.1e-61 205.8 0.4 7e-61 205.6 0.4 1.0 1 0 0 1 1 1 1 Pyrococcus protein of unknown function, DUF257 DUF257 PF03192.13 gi|530549156|ref|YP_008429705.1| - 5.1e-55 186.5 1.4 6.1e-55 186.2 1.4 1.0 1 0 0 1 1 1 1 Pyrococcus protein of unknown function, DUF257 GTP_EFTU_D4 PF14578.6 gi|530549157|ref|YP_008429706.1| - 5.2e-12 45.5 0.5 6.4e-12 45.2 0.5 1.1 1 0 0 1 1 1 1 Elongation factor Tu domain 4 TatD_DNase PF01026.21 gi|530549158|ref|YP_008429707.1| - 1.2e-31 110.1 0.1 1.4e-31 109.8 0.1 1.0 1 0 0 1 1 1 1 TatD related DNase AP_endonuc_2 PF01261.24 gi|530549158|ref|YP_008429707.1| - 0.0099 15.3 0.1 0.019 14.4 0.1 1.4 1 1 0 1 1 1 1 Xylose isomerase-like TIM barrel NTP_transf_2 PF01909.23 gi|530549159|ref|YP_008429708.1| - 2.8e-12 46.8 1.1 3.4e-12 46.5 1.1 1.2 1 1 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|530549159|ref|YP_008429708.1| - 1.5e-08 34.6 0.1 1.6e-08 34.5 0.1 1.2 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DNA_pol_B_palm PF14792.6 gi|530549159|ref|YP_008429708.1| - 0.0073 16.5 0.0 0.01 16.0 0.0 1.3 1 0 0 1 1 1 1 DNA polymerase beta palm RlaP PF10127.9 gi|530549159|ref|YP_008429708.1| - 0.051 13.2 0.0 0.051 13.2 0.0 1.1 1 0 0 1 1 1 0 RNA repair pathway DNA polymerase beta family DUF294 PF03445.13 gi|530549159|ref|YP_008429708.1| - 0.12 12.2 0.0 0.15 11.9 0.0 1.3 1 0 0 1 1 1 0 Putative nucleotidyltransferase DUF294 HEPN PF05168.14 gi|530549160|ref|YP_008429709.1| - 7.2e-25 87.4 4.4 8.8e-25 87.1 4.4 1.0 1 0 0 1 1 1 1 HEPN domain YaaC PF14175.6 gi|530549160|ref|YP_008429709.1| - 0.0032 16.8 0.0 0.0052 16.1 0.0 1.4 1 0 0 1 1 1 1 YaaC-like Protein Vezatin PF12632.7 gi|530549160|ref|YP_008429709.1| - 0.037 13.4 0.0 0.084 12.2 0.0 1.5 1 1 0 2 2 2 0 Mysoin-binding motif of peroxisomes PaREP1 PF05942.11 gi|530549160|ref|YP_008429709.1| - 0.037 14.0 3.1 0.044 13.7 0.3 2.1 2 0 0 2 2 2 0 Archaeal PaREP1/PaREP8 family DUF1819 PF08849.11 gi|530549160|ref|YP_008429709.1| - 0.063 13.1 0.4 0.094 12.5 0.4 1.4 1 1 0 1 1 1 0 Putative inner membrane protein (DUF1819) TctB PF07331.11 gi|530549161|ref|YP_008429710.1| - 0.037 14.3 0.2 0.05 13.9 0.2 1.2 1 0 0 1 1 1 0 Tripartite tricarboxylate transporter TctB family DctM PF06808.12 gi|530549161|ref|YP_008429710.1| - 0.063 12.1 0.1 0.076 11.8 0.1 1.0 1 0 0 1 1 1 0 Tripartite ATP-independent periplasmic transporter, DctM component DUF3368 PF11848.8 gi|564287490|ref|YP_008429711.3| - 9.6e-10 38.1 0.2 1.5e-09 37.4 0.2 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF3368) IF-2 PF11987.8 gi|564287490|ref|YP_008429711.3| - 0.11 12.7 0.2 0.38 10.9 0.0 1.8 2 0 0 2 2 2 0 Translation-initiation factor 2 UPF0175 PF03683.13 gi|530549163|ref|YP_008429712.1| - 1.7e-28 98.2 0.3 2e-28 97.9 0.3 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0175) RTC PF01137.21 gi|530549164|ref|YP_008429713.1| - 3.7e-78 261.7 0.0 4.3e-78 261.5 0.0 1.0 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase RTC_insert PF05189.13 gi|530549164|ref|YP_008429713.1| - 1.8e-25 89.4 0.0 3.2e-25 88.6 0.0 1.4 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase (RTC), insert domain RBD PF02196.15 gi|530549165|ref|YP_008429714.1| - 0.041 14.0 0.0 1.2 9.2 0.0 2.6 2 0 0 2 2 2 0 Raf-like Ras-binding domain DUF87 PF01935.17 gi|530549165|ref|YP_008429714.1| - 0.068 13.2 1.5 0.38 10.8 0.5 2.2 1 1 1 2 2 2 0 Helicase HerA, central domain Metallophos_2 PF12850.7 gi|530549166|ref|YP_008429715.1| - 1.4e-31 109.9 0.0 1.6e-31 109.7 0.0 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|530549166|ref|YP_008429715.1| - 1.1e-09 39.1 1.7 2.1e-07 31.7 0.1 2.2 1 1 1 2 2 2 2 Calcineurin-like phosphoesterase Metallophos_3 PF14582.6 gi|530549166|ref|YP_008429715.1| - 5.7e-05 22.6 0.3 0.00066 19.1 0.1 2.0 1 1 1 2 2 2 1 Metallophosphoesterase, calcineurin superfamily Sld5 PF05916.11 gi|530549167|ref|YP_008429716.1| - 9.3e-08 32.5 2.0 1.2e-07 32.2 2.0 1.1 1 0 0 1 1 1 1 GINS complex protein MCM PF00493.23 gi|530549168|ref|YP_008429717.1| - 4.7e-88 294.1 2.1 2.8e-44 150.9 0.1 4.1 4 0 0 4 4 4 3 MCM P-loop domain Intein_splicing PF14890.6 gi|530549168|ref|YP_008429717.1| - 9e-50 168.1 6.3 2.5e-26 92.2 0.1 3.3 3 0 0 3 3 3 2 Intein splicing domain MCM_OB PF17207.3 gi|530549168|ref|YP_008429717.1| - 3.4e-35 120.6 0.0 6.5e-35 119.7 0.0 1.4 1 0 0 1 1 1 1 MCM OB domain MCM_lid PF17855.1 gi|530549168|ref|YP_008429717.1| - 9.2e-32 109.3 1.5 2.8e-31 107.8 1.5 1.9 1 0 0 1 1 1 1 MCM AAA-lid domain MCM_N PF14551.6 gi|530549168|ref|YP_008429717.1| - 2.9e-12 47.1 0.1 1.1e-11 45.2 0.1 2.1 1 0 0 1 1 1 1 MCM N-terminal domain LAGLIDADG_3 PF14528.6 gi|530549168|ref|YP_008429717.1| - 6.7e-08 32.7 2.5 6.3e-05 23.2 0.1 4.7 4 0 0 4 4 4 1 LAGLIDADG-like domain Zn-ribbon_8 PF09723.10 gi|530549168|ref|YP_008429717.1| - 0.0015 18.6 0.4 0.0036 17.4 0.4 1.6 1 0 0 1 1 1 1 Zinc ribbon domain Mg_chelatase PF01078.21 gi|530549168|ref|YP_008429717.1| - 0.0015 17.9 0.0 0.009 15.4 0.0 2.1 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_3 PF07726.11 gi|530549168|ref|YP_008429717.1| - 0.0023 17.8 0.0 0.022 14.6 0.0 2.3 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Hint PF01079.20 gi|530549168|ref|YP_008429717.1| - 0.021 14.3 0.0 0.22 11.0 0.0 2.2 2 0 0 2 2 2 0 Hint module LAGLIDADG_1 PF00961.19 gi|530549168|ref|YP_008429717.1| - 0.032 15.2 0.2 0.33 12.0 0.0 2.7 2 0 0 2 2 2 0 LAGLIDADG endonuclease AAA_5 PF07728.14 gi|530549168|ref|YP_008429717.1| - 0.034 14.1 0.1 3.9 7.5 0.0 3.1 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) HypA PF01155.19 gi|530549168|ref|YP_008429717.1| - 0.035 14.1 0.1 0.1 12.6 0.1 1.8 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DUF3987 PF13148.6 gi|530549168|ref|YP_008429717.1| - 0.072 12.1 0.2 0.14 11.2 0.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3987) TackOD1 PF18551.1 gi|530549168|ref|YP_008429717.1| - 0.072 12.8 0.3 0.15 11.7 0.3 1.4 1 0 0 1 1 1 0 Thaumarchaeal output domain 1 PhnA_Zn_Ribbon PF08274.12 gi|530549168|ref|YP_008429717.1| - 0.17 11.9 0.8 1.6 8.8 0.0 2.3 2 0 0 2 2 2 0 PhnA Zinc-Ribbon eIF-5_eIF-2B PF01873.17 gi|530549169|ref|YP_008429718.1| - 3.2e-37 127.0 0.0 3.7e-37 126.8 0.0 1.0 1 0 0 1 1 1 1 Domain found in IF2B/IF5 Lar_restr_allev PF14354.6 gi|530549169|ref|YP_008429718.1| - 0.0026 18.1 0.7 0.0046 17.3 0.7 1.4 1 0 0 1 1 1 1 Restriction alleviation protein Lar FdhE PF04216.12 gi|530549169|ref|YP_008429718.1| - 0.0061 16.5 0.1 0.0061 16.5 0.1 1.3 1 1 0 1 1 1 1 Protein involved in formate dehydrogenase formation Tmemb_55A PF09788.9 gi|530549169|ref|YP_008429718.1| - 0.0066 15.6 0.0 0.0083 15.2 0.0 1.1 1 0 0 1 1 1 1 Transmembrane protein 55A Zn-ribbon_8 PF09723.10 gi|530549169|ref|YP_008429718.1| - 0.01 15.9 0.2 1 9.6 0.0 2.6 2 0 0 2 2 2 0 Zinc ribbon domain Elf1 PF05129.13 gi|530549169|ref|YP_008429718.1| - 0.011 15.7 0.2 0.018 15.1 0.2 1.3 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like zf-TFIIB PF13453.6 gi|530549169|ref|YP_008429718.1| - 0.013 14.8 1.2 0.013 14.8 1.2 2.0 2 0 0 2 2 2 0 Transcription factor zinc-finger Zn_Tnp_IS1595 PF12760.7 gi|530549169|ref|YP_008429718.1| - 0.02 14.9 0.5 0.033 14.1 0.5 1.4 1 0 0 1 1 1 0 Transposase zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|530549169|ref|YP_008429718.1| - 0.078 12.7 2.9 6.9 6.5 0.1 2.6 3 0 0 3 3 3 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|530549169|ref|YP_008429718.1| - 0.083 12.4 1.8 0.26 10.8 1.8 1.9 1 1 0 1 1 1 0 TFIIB zinc-binding Vps36-NZF-N PF16988.5 gi|530549169|ref|YP_008429718.1| - 0.14 11.5 0.7 0.28 10.6 0.7 1.6 1 1 0 1 1 1 0 Vacuolar protein sorting 36 NZF-N zinc-finger domain Prok-RING_1 PF14446.6 gi|530549169|ref|YP_008429718.1| - 0.15 12.0 0.7 0.91 9.5 0.1 2.1 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 zf-ribbon_3 PF13248.6 gi|530549169|ref|YP_008429718.1| - 0.2 11.1 2.6 0.78 9.2 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DUF35_N PF12172.8 gi|530549169|ref|YP_008429718.1| - 0.58 10.1 4.0 12 5.9 0.2 2.4 1 1 1 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf_C2H2_13 PF18508.1 gi|530549169|ref|YP_008429718.1| - 1.8 8.2 4.8 3.2 7.4 0.2 2.7 2 1 1 3 3 3 0 Zinc finger domain Carboxyl_trans PF01039.22 gi|530549170|ref|YP_008429719.1| - 5.2e-205 681.7 0.3 6e-205 681.6 0.3 1.0 1 0 0 1 1 1 1 Carboxyl transferase domain MdcE PF06833.11 gi|530549170|ref|YP_008429719.1| - 3.4e-07 30.0 0.1 7.4e-07 28.9 0.1 1.5 1 0 0 1 1 1 1 Malonate decarboxylase gamma subunit (MdcE) OAD_gamma PF04277.13 gi|530549171|ref|YP_008429720.1| - 2e-12 47.5 0.5 2.7e-12 47.1 0.5 1.2 1 0 0 1 1 1 1 Oxaloacetate decarboxylase, gamma chain TNFR_16_TM PF18422.1 gi|530549171|ref|YP_008429720.1| - 4.9 7.2 6.5 13 5.9 3.6 2.3 2 1 0 2 2 2 0 Tumor necrosis factor receptor member 16 trans-membrane domain Biotin_lipoyl PF00364.22 gi|530549172|ref|YP_008429721.1| - 1.4e-25 88.9 1.5 4.8e-25 87.2 0.9 2.3 2 1 0 2 2 2 1 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.6 gi|530549172|ref|YP_008429721.1| - 2e-15 56.3 0.5 1.1e-06 28.3 0.0 2.5 1 1 1 2 2 2 2 Biotin-lipoyl like HlyD_3 PF13437.6 gi|530549172|ref|YP_008429721.1| - 8.4e-06 26.4 2.9 0.04 14.6 0.0 3.3 4 0 0 4 4 4 2 HlyD family secretion protein HlyD_D23 PF16576.5 gi|530549172|ref|YP_008429721.1| - 0.00012 21.3 0.1 0.092 12.0 0.0 2.3 1 1 1 2 2 2 2 Barrel-sandwich domain of CusB or HlyD membrane-fusion RnfC_N PF13375.6 gi|530549172|ref|YP_008429721.1| - 0.00048 20.0 0.6 0.1 12.6 0.0 2.7 1 1 1 3 3 3 2 RnfC Barrel sandwich hybrid domain PTS_EIIA_1 PF00358.20 gi|530549172|ref|YP_008429721.1| - 0.00073 19.3 0.0 0.86 9.4 0.0 2.5 1 1 1 2 2 2 2 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 NQRA PF05896.11 gi|530549172|ref|YP_008429721.1| - 0.0025 17.3 0.2 0.18 11.2 0.1 2.1 1 1 1 2 2 2 2 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) Peptidase_M23 PF01551.22 gi|530549172|ref|YP_008429721.1| - 0.12 12.6 0.2 1.4 9.2 0.2 2.7 1 1 0 1 1 1 0 Peptidase family M23 YqfD PF06898.11 gi|530549172|ref|YP_008429721.1| - 0.25 10.1 1.1 0.84 8.4 0.1 2.1 1 1 1 2 2 2 0 Putative stage IV sporulation protein YqfD DUF4813 PF16072.5 gi|530549172|ref|YP_008429721.1| - 2.3 7.8 17.2 3.6 7.2 16.8 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4813) OAD_beta PF03977.13 gi|530549173|ref|YP_008429722.1| - 9.4e-156 518.2 29.4 1.1e-155 518.0 29.4 1.0 1 0 0 1 1 1 1 Na+-transporting oxaloacetate decarboxylase beta subunit UPF0029 PF01205.19 gi|530549174|ref|YP_008429723.1| - 8.1e-33 112.9 0.0 1.4e-32 112.1 0.0 1.4 1 0 0 1 1 1 1 Uncharacterized protein family UPF0029 DUF1949 PF09186.11 gi|530549174|ref|YP_008429723.1| - 6e-08 32.5 0.0 1.3e-07 31.4 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF1949) Sigma70_r4_2 PF08281.12 gi|530549175|ref|YP_008429724.1| - 0.0001 21.9 0.3 0.00016 21.3 0.3 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_10 PF04967.12 gi|530549175|ref|YP_008429724.1| - 0.00016 21.4 0.7 0.00028 20.6 0.3 1.6 2 0 0 2 2 2 1 HTH DNA binding domain HTH_11 PF08279.12 gi|530549175|ref|YP_008429724.1| - 0.0013 18.7 0.0 0.002 18.0 0.0 1.3 1 0 0 1 1 1 1 HTH domain HTH_24 PF13412.6 gi|530549175|ref|YP_008429724.1| - 0.0018 17.8 0.1 0.0032 17.0 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Sigma70_r4 PF04545.16 gi|530549175|ref|YP_008429724.1| - 0.005 16.3 0.2 0.0073 15.8 0.2 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 GntR PF00392.21 gi|530549175|ref|YP_008429724.1| - 0.0077 15.9 0.2 0.019 14.6 0.2 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family MarR_2 PF12802.7 gi|530549175|ref|YP_008429724.1| - 0.017 15.0 0.1 0.028 14.3 0.1 1.3 1 0 0 1 1 1 0 MarR family KORA PF16509.5 gi|530549175|ref|YP_008429724.1| - 0.02 15.1 0.0 0.033 14.5 0.0 1.4 1 0 0 1 1 1 0 TrfB plasmid transcriptional repressor DUF134 PF02001.16 gi|530549175|ref|YP_008429724.1| - 0.024 15.2 0.1 0.036 14.6 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function DUF134 HTH_23 PF13384.6 gi|530549175|ref|YP_008429724.1| - 0.036 13.9 0.0 0.065 13.0 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain GerE PF00196.19 gi|530549175|ref|YP_008429724.1| - 0.04 13.5 0.2 0.062 12.9 0.2 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family HTH_Crp_2 PF13545.6 gi|530549175|ref|YP_008429724.1| - 0.042 13.8 0.0 0.075 13.0 0.0 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain UPF0122 PF04297.14 gi|530549175|ref|YP_008429724.1| - 0.044 14.0 0.1 0.068 13.4 0.1 1.3 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like HTH_29 PF13551.6 gi|530549175|ref|YP_008429724.1| - 0.05 13.6 0.0 0.086 12.9 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix Sigma70_ECF PF07638.11 gi|530549175|ref|YP_008429724.1| - 0.051 13.5 0.2 0.078 12.9 0.2 1.3 1 0 0 1 1 1 0 ECF sigma factor HTH_22 PF13309.6 gi|530549175|ref|YP_008429724.1| - 0.11 12.6 0.0 11 6.2 0.0 2.4 2 0 0 2 2 2 0 HTH domain TrmB PF01978.19 gi|530549175|ref|YP_008429724.1| - 0.11 12.4 0.1 0.21 11.5 0.1 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_7 PF02796.15 gi|530549175|ref|YP_008429724.1| - 0.14 12.2 0.0 0.24 11.5 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase PUA PF01472.20 gi|530549175|ref|YP_008429724.1| - 0.15 12.1 0.6 0.51 10.3 0.1 2.1 1 1 1 2 2 2 0 PUA domain Sigma70_r3 PF04539.16 gi|530549175|ref|YP_008429724.1| - 0.15 12.2 0.3 0.23 11.6 0.3 1.3 1 0 0 1 1 1 0 Sigma-70 region 3 MAPEG PF01124.18 gi|530549176|ref|YP_008429725.1| - 1.9 8.4 8.5 0.49 10.3 2.5 2.4 2 1 0 2 2 2 0 MAPEG family bPH_5 PF10882.8 gi|530549177|ref|YP_008429726.1| - 0.015 15.3 0.1 0.038 14.1 0.0 1.7 2 0 0 2 2 2 0 Bacterial PH domain bPH_4 PF06713.11 gi|530549177|ref|YP_008429726.1| - 0.023 14.8 0.0 0.045 13.8 0.0 1.4 1 0 0 1 1 1 0 Bacterial PH domain EbsA PF17255.2 gi|530549177|ref|YP_008429726.1| - 0.091 13.1 0.1 0.091 13.1 0.1 2.8 1 1 1 3 3 3 0 EbsA-like protein PadR PF03551.14 gi|530549178|ref|YP_008429727.1| - 1.7e-22 79.2 0.5 2.3e-22 78.7 0.5 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_34 PF13601.6 gi|530549178|ref|YP_008429727.1| - 0.0025 17.9 0.0 0.0085 16.2 0.0 1.8 1 1 0 1 1 1 1 Winged helix DNA-binding domain DUF505 PF04458.12 gi|530549178|ref|YP_008429727.1| - 0.015 13.7 0.1 0.015 13.7 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF505) ArsR PF09824.9 gi|530549178|ref|YP_008429727.1| - 0.051 13.2 0.0 0.11 12.1 0.0 1.6 1 1 0 1 1 1 0 ArsR transcriptional regulator HxlR PF01638.17 gi|530549178|ref|YP_008429727.1| - 0.089 12.7 0.1 0.12 12.2 0.1 1.4 1 0 0 1 1 1 0 HxlR-like helix-turn-helix TrmB PF01978.19 gi|530549178|ref|YP_008429727.1| - 0.11 12.4 0.7 0.72 9.8 0.7 2.3 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Replic_Relax PF13814.6 gi|530549178|ref|YP_008429727.1| - 0.15 12.1 0.0 0.18 11.9 0.0 1.1 1 0 0 1 1 1 0 Replication-relaxation DUF1648 PF07853.11 gi|530549179|ref|YP_008429728.1| - 4.8e-13 48.5 1.0 4.8e-13 48.5 1.0 3.5 4 0 0 4 4 4 1 Protein of unknown function (DUF1648) SdpI PF13630.6 gi|530549179|ref|YP_008429728.1| - 5.2e-10 39.3 0.8 5.2e-10 39.3 0.8 3.7 3 1 0 3 3 3 1 SdpI/YhfL protein family TMEM100 PF16311.5 gi|530549179|ref|YP_008429728.1| - 8.5 6.0 6.1 0.62 9.6 0.1 2.1 3 0 0 3 3 3 0 Transmembrane protein 100 RIO1 PF01163.22 gi|530549180|ref|YP_008429729.1| - 4.4e-15 55.8 0.1 6.2e-15 55.3 0.1 1.2 1 0 0 1 1 1 1 RIO1 family Kdo PF06293.14 gi|530549180|ref|YP_008429729.1| - 4.2e-13 49.1 0.2 7e-13 48.4 0.2 1.4 1 0 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family Pkinase PF00069.25 gi|530549180|ref|YP_008429729.1| - 6.2e-13 48.7 0.4 7.9e-13 48.4 0.4 1.1 1 0 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.17 gi|530549180|ref|YP_008429729.1| - 3.3e-11 43.0 0.1 3.8e-11 42.8 0.1 1.1 1 0 0 1 1 1 1 Protein tyrosine kinase APH PF01636.23 gi|530549180|ref|YP_008429729.1| - 4.1e-09 36.7 0.2 0.00015 21.8 0.0 2.2 1 1 1 2 2 2 2 Phosphotransferase enzyme family WaaY PF06176.11 gi|530549180|ref|YP_008429729.1| - 0.00028 20.6 0.2 0.0011 18.6 0.2 1.8 1 1 0 1 1 1 1 Lipopolysaccharide core biosynthesis protein (WaaY) Choline_kinase PF01633.20 gi|530549180|ref|YP_008429729.1| - 0.013 15.1 0.0 0.035 13.7 0.0 1.6 1 1 1 2 2 2 0 Choline/ethanolamine kinase Gemini_mov PF01708.16 gi|530549181|ref|YP_008429730.1| - 7.4 6.4 5.7 9.9 6.0 0.1 3.0 3 0 0 3 3 3 0 Geminivirus putative movement protein MutS_V PF00488.21 gi|530549182|ref|YP_008429731.1| - 4e-07 30.3 0.0 6.6e-07 29.5 0.0 1.4 1 0 0 1 1 1 1 MutS domain V AAA_14 PF13173.6 gi|530549182|ref|YP_008429731.1| - 0.00018 21.5 0.0 0.00069 19.7 0.0 2.0 1 0 0 1 1 1 1 AAA domain AAA_21 PF13304.6 gi|530549182|ref|YP_008429731.1| - 0.0012 18.7 7.6 0.07 12.9 0.2 3.5 4 0 0 4 4 4 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|530549182|ref|YP_008429731.1| - 0.0026 18.2 1.6 2.1 8.7 0.2 3.3 2 1 1 3 3 3 1 AAA ATPase domain CPT PF07931.12 gi|530549182|ref|YP_008429731.1| - 0.01 15.7 0.0 0.029 14.2 0.0 1.8 1 1 0 1 1 1 0 Chloramphenicol phosphotransferase-like protein AAA_28 PF13521.6 gi|530549182|ref|YP_008429731.1| - 0.012 15.8 0.3 0.073 13.3 0.0 2.4 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.6 gi|530549182|ref|YP_008429731.1| - 0.019 15.3 0.1 0.46 10.8 0.1 3.2 2 1 0 2 2 1 0 AAA domain AAA PF00004.29 gi|530549182|ref|YP_008429731.1| - 0.032 14.7 2.3 0.041 14.3 0.0 2.3 3 1 0 3 3 2 0 ATPase family associated with various cellular activities (AAA) HAD PF12710.7 gi|530549182|ref|YP_008429731.1| - 0.064 13.7 0.5 0.77 10.1 0.0 2.8 2 1 1 3 3 3 0 haloacid dehalogenase-like hydrolase PRP1_N PF06424.12 gi|530549182|ref|YP_008429731.1| - 0.3 11.5 1.4 0.95 9.9 1.4 1.8 1 0 0 1 1 1 0 PRP1 splicing factor, N-terminal DUF4061 PF13270.6 gi|530549182|ref|YP_008429731.1| - 0.42 10.9 6.5 0.26 11.6 0.2 2.8 3 0 0 3 3 2 0 Domain of unknown function (DUF4061) DUF3510 PF12022.8 gi|530549182|ref|YP_008429731.1| - 0.57 10.6 5.6 0.13 12.6 0.7 2.4 2 1 0 2 2 2 0 Domain of unknown function (DUF3510) ABC_tran PF00005.27 gi|530549182|ref|YP_008429731.1| - 4.7 7.7 5.2 1.7 9.2 0.2 2.7 4 0 0 4 4 3 0 ABC transporter AAA_23 PF13476.6 gi|530549182|ref|YP_008429731.1| - 8.5 6.8 30.5 0.28 11.7 0.9 3.6 3 1 0 3 3 3 0 AAA domain MoaC PF01967.21 gi|530549183|ref|YP_008429732.1| - 8.8e-52 174.8 0.5 9.9e-52 174.6 0.5 1.0 1 0 0 1 1 1 1 MoaC family YbjQ_1 PF01906.17 gi|530549184|ref|YP_008429733.1| - 5e-38 129.9 3.4 5.5e-38 129.8 3.4 1.0 1 0 0 1 1 1 1 Putative heavy-metal-binding SeleniumBinding PF11524.8 gi|530549184|ref|YP_008429733.1| - 0.001 19.4 1.0 0.42 11.1 0.3 2.1 1 1 0 2 2 2 2 Selenium binding protein Fe-ADH PF00465.19 gi|530549184|ref|YP_008429733.1| - 0.016 14.1 0.1 0.019 13.8 0.1 1.1 1 0 0 1 1 1 0 Iron-containing alcohol dehydrogenase ABC2_membrane_2 PF12679.7 gi|530549185|ref|YP_008429734.1| - 0.01 15.1 0.0 0.01 15.1 0.0 1.0 1 0 0 1 1 1 0 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|530549186|ref|YP_008429735.1| - 1.9e-41 142.3 24.1 2.2e-41 142.1 24.1 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|530549186|ref|YP_008429735.1| - 1.9e-13 50.3 26.1 1.9e-13 50.3 26.1 1.5 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|530549186|ref|YP_008429735.1| - 2.3e-11 44.0 16.7 2.3e-11 44.0 16.7 1.9 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|530549186|ref|YP_008429735.1| - 2.8e-08 33.5 19.1 2.8e-08 33.5 19.1 1.8 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_5 PF13346.6 gi|530549186|ref|YP_008429735.1| - 0.0016 18.1 17.2 0.0016 18.1 17.2 2.7 2 1 1 3 3 3 1 ABC-2 family transporter protein ABC_tran PF00005.27 gi|530549187|ref|YP_008429736.1| - 9.4e-33 113.6 0.0 3.3e-32 111.9 0.0 1.8 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 gi|530549187|ref|YP_008429736.1| - 1.3e-10 41.6 2.5 1.2e-07 31.9 0.0 2.5 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|530549187|ref|YP_008429736.1| - 8.3e-10 39.2 3.1 2.1e-09 37.9 3.1 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_23 PF13476.6 gi|530549187|ref|YP_008429736.1| - 0.0038 17.7 10.3 0.037 14.5 10.3 2.3 1 1 0 1 1 1 1 AAA domain SRP54 PF00448.22 gi|530549187|ref|YP_008429736.1| - 0.0094 15.6 0.0 0.023 14.4 0.0 1.6 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_13 PF13166.6 gi|530549187|ref|YP_008429736.1| - 0.016 13.9 0.2 0.71 8.4 0.0 2.5 2 1 0 2 2 2 0 AAA domain TcdB_N PF12918.7 gi|530549187|ref|YP_008429736.1| - 0.026 14.8 0.1 0.073 13.4 0.1 1.7 1 0 0 1 1 1 0 TcdB toxin N-terminal helical domain MukB PF04310.12 gi|530549187|ref|YP_008429736.1| - 0.026 14.3 0.4 0.064 13.0 0.0 1.8 2 1 1 3 3 3 0 MukB N-terminal AAA_29 PF13555.6 gi|530549187|ref|YP_008429736.1| - 0.028 14.1 0.1 0.055 13.2 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain SMC_N PF02463.19 gi|530549187|ref|YP_008429736.1| - 0.04 13.3 1.2 6 6.2 0.1 2.7 3 0 0 3 3 3 0 RecF/RecN/SMC N terminal domain CTD_bind PF04818.13 gi|530549187|ref|YP_008429736.1| - 0.11 13.3 0.1 7.4 7.5 0.0 2.8 3 0 0 3 3 3 0 RNA polymerase II-binding domain. NPCBM_assoc PF10633.9 gi|530549188|ref|YP_008429737.1| - 1.7e-32 111.5 0.5 8.5e-10 38.7 1.0 7.3 6 1 0 6 6 6 4 NPCBM-associated, NEW3 domain of alpha-galactosidase CarboxypepD_reg PF13620.6 gi|530549188|ref|YP_008429737.1| - 1.3e-15 57.4 3.8 2e-11 44.0 0.0 4.0 4 0 0 4 4 3 2 Carboxypeptidase regulatory-like domain FixG_C PF11614.8 gi|530549188|ref|YP_008429737.1| - 3e-11 43.6 5.8 0.0045 17.2 0.0 6.8 2 2 5 8 8 8 2 IG-like fold at C-terminal of FixG, putative oxidoreductase PEGA PF08308.11 gi|530549188|ref|YP_008429737.1| - 1.1e-08 34.8 2.4 3.3e-07 30.1 0.3 4.0 3 0 0 3 3 3 1 PEGA domain DUF4625 PF15418.6 gi|530549188|ref|YP_008429737.1| - 2e-07 31.3 0.1 0.012 15.9 0.0 4.9 6 0 0 6 6 5 2 Domain of unknown function (DUF4625) DUF916 PF06030.12 gi|530549188|ref|YP_008429737.1| - 1.3e-06 28.5 7.3 0.22 11.6 0.8 5.7 5 0 0 5 5 5 1 Bacterial protein of unknown function (DUF916) MG2 PF01835.19 gi|530549188|ref|YP_008429737.1| - 5.9e-06 26.7 0.1 3.4 8.2 0.0 5.5 5 1 1 6 6 5 2 MG2 domain CARDB PF07705.11 gi|530549188|ref|YP_008429737.1| - 2.1e-05 24.7 5.7 0.076 13.3 0.0 5.8 5 2 1 6 6 6 1 CARDB Transglut_N PF00868.20 gi|530549188|ref|YP_008429737.1| - 4.7e-05 23.7 0.0 3.3 8.1 0.0 4.5 4 0 0 4 4 3 1 Transglutaminase family DUF4832 PF16116.5 gi|530549188|ref|YP_008429737.1| - 8.2e-05 22.5 0.2 1.2 8.9 0.1 4.5 3 1 2 5 5 5 2 Domain of unknown function (DUF4832) CarbopepD_reg_2 PF13715.6 gi|530549188|ref|YP_008429737.1| - 0.00026 20.9 0.8 0.00026 20.9 0.8 4.5 6 0 0 6 6 6 1 CarboxypepD_reg-like domain Fn3-like PF14310.6 gi|530549188|ref|YP_008429737.1| - 0.0013 18.8 1.3 10 6.3 0.0 5.4 5 0 0 5 5 4 0 Fibronectin type III-like domain Alpha_adaptinC2 PF02883.20 gi|530549188|ref|YP_008429737.1| - 0.0014 18.9 0.1 0.12 12.7 0.0 3.6 3 1 0 3 3 3 1 Adaptin C-terminal domain Wzt_C PF14524.6 gi|530549188|ref|YP_008429737.1| - 0.0018 18.3 1.0 0.55 10.3 0.0 4.3 5 0 0 5 5 5 1 Wzt C-terminal domain FlgD_ig PF13860.6 gi|530549188|ref|YP_008429737.1| - 0.0041 17.0 1.4 2.2 8.2 0.1 4.7 4 0 0 4 4 4 1 FlgD Ig-like domain BsuPI PF12690.7 gi|530549188|ref|YP_008429737.1| - 0.0042 17.1 2.2 22 5.2 0.0 5.6 6 1 1 7 7 6 0 Intracellular proteinase inhibitor DUF4981 PF16353.5 gi|530549188|ref|YP_008429737.1| - 0.014 15.8 0.6 15 6.2 0.0 4.7 4 1 1 5 5 5 0 Domain of unknown function(DUF4981) Big_1 PF02369.16 gi|530549188|ref|YP_008429737.1| - 0.028 14.4 4.8 0.32 11.0 0.1 4.0 2 2 1 3 3 3 0 Bacterial Ig-like domain (group 1) Big_3 PF07523.12 gi|530549188|ref|YP_008429737.1| - 0.053 13.8 11.8 0.1 12.9 0.3 5.9 6 1 1 7 7 6 0 Bacterial Ig-like domain (group 3) I-set PF07679.16 gi|530549188|ref|YP_008429737.1| - 0.06 13.4 0.3 12 6.0 0.0 4.4 5 0 0 5 5 4 0 Immunoglobulin I-set domain MBG_2 PF18676.1 gi|530549188|ref|YP_008429737.1| - 0.062 13.9 3.1 2.3 8.9 0.1 4.0 4 0 0 4 4 3 0 MBG domain (YGX type) DUF4397 PF14344.6 gi|530549188|ref|YP_008429737.1| - 0.18 12.6 4.2 4.6 8.0 0.4 4.1 5 1 0 5 5 3 0 Domain of unknown function (DUF4397) A2M PF00207.22 gi|530549188|ref|YP_008429737.1| - 0.2 11.5 0.8 2.4 8.1 0.1 3.2 4 0 0 4 4 4 0 Alpha-2-macroglobulin family DUF1533 PF07550.11 gi|530549188|ref|YP_008429737.1| - 0.31 11.0 2.8 16 5.4 0.2 4.6 4 0 0 4 4 4 0 Protein of unknown function (DUF1533) DUF2271 PF10029.9 gi|530549188|ref|YP_008429737.1| - 0.5 10.0 2.9 6.1 6.5 0.2 3.8 4 1 1 5 5 5 0 Predicted periplasmic protein (DUF2271) Cohesin PF00963.18 gi|530549188|ref|YP_008429737.1| - 1.5 9.0 13.8 0.78 10.0 0.5 4.6 4 2 0 4 4 4 0 Cohesin domain He_PIG PF05345.12 gi|530549188|ref|YP_008429737.1| - 5.9 7.2 11.0 12 6.1 1.2 4.3 4 1 1 5 5 3 0 Putative Ig domain ABC2_membrane_2 PF12679.7 gi|530549189|ref|YP_008429738.1| - 4.8e-53 180.3 18.3 5.4e-53 180.1 18.3 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|530549189|ref|YP_008429738.1| - 3.5e-09 36.3 23.4 3.5e-09 36.3 23.4 1.6 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|530549189|ref|YP_008429738.1| - 9.5e-09 35.5 13.9 9.5e-09 35.5 13.9 2.4 2 1 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|530549189|ref|YP_008429738.1| - 8.7e-08 31.8 14.8 8.7e-08 31.8 14.8 2.5 3 1 0 3 3 3 1 ABC-2 type transporter ABC2_membrane_5 PF13346.6 gi|530549189|ref|YP_008429738.1| - 3.1e-07 30.1 11.8 3.1e-07 30.1 11.8 2.8 3 0 0 3 3 3 1 ABC-2 family transporter protein RtcB PF01139.17 gi|530549190|ref|YP_008429739.1| - 4.4e-181 602.6 0.8 4.9e-181 602.4 0.8 1.0 1 0 0 1 1 1 1 tRNA-splicing ligase RtcB Lig_C PF18330.1 gi|530549190|ref|YP_008429739.1| - 0.0012 18.8 0.0 0.0025 17.8 0.0 1.4 1 0 0 1 1 1 1 Ligase Pab1020 C-terminal region Complex1_LYR PF05347.15 gi|530549190|ref|YP_008429739.1| - 0.17 12.0 0.1 0.38 10.8 0.1 1.6 1 0 0 1 1 1 0 Complex 1 protein (LYR family) Methyltranf_PUA PF13636.6 gi|530549191|ref|YP_008429740.1| - 2.4e-14 53.0 0.9 3.9e-14 52.4 0.9 1.4 1 0 0 1 1 1 1 RNA-binding PUA-like domain of methyltransferase RsmF Methyltr_RsmB-F PF01189.17 gi|530549192|ref|YP_008429741.1| - 2.5e-55 187.3 0.0 3.3e-55 186.8 0.0 1.2 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F Methyltr_RsmF_N PF17125.5 gi|530549192|ref|YP_008429741.1| - 4.8e-17 62.2 0.1 1.4e-16 60.7 0.0 1.8 2 0 0 2 2 2 1 N-terminal domain of 16S rRNA methyltransferase RsmF FtsJ PF01728.19 gi|530549192|ref|YP_008429741.1| - 0.00015 22.0 0.0 0.00019 21.6 0.0 1.2 1 0 0 1 1 1 1 FtsJ-like methyltransferase Met_10 PF02475.16 gi|530549192|ref|YP_008429741.1| - 0.0034 17.1 0.0 0.0055 16.5 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_31 PF13847.6 gi|530549192|ref|YP_008429741.1| - 0.0035 17.2 0.0 0.005 16.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|530549192|ref|YP_008429741.1| - 0.02 15.6 0.0 0.17 12.6 0.0 2.2 1 1 0 1 1 1 0 Methyltransferase domain V_ATPase_prox PF18274.1 gi|530549192|ref|YP_008429741.1| - 0.076 13.0 0.4 1.3 9.1 0.2 2.5 2 1 0 2 2 2 0 Vacuolar ATPase Subunit I N-terminal proximal lobe Archease PF01951.16 gi|530549193|ref|YP_008429742.1| - 6.3e-46 156.1 0.9 7e-46 155.9 0.9 1.0 1 0 0 1 1 1 1 Archease protein family (MTH1598/TM1083) SPOUT_MTase_2 PF14419.6 gi|530549193|ref|YP_008429742.1| - 0.089 12.2 0.1 0.12 11.7 0.1 1.3 1 0 0 1 1 1 0 AF2226-like SPOUT RNA Methylase fused to THUMP Pantoate_transf PF02548.15 gi|530549194|ref|YP_008429743.1| - 5.5e-108 360.3 0.6 6.3e-108 360.1 0.6 1.0 1 0 0 1 1 1 1 Ketopantoate hydroxymethyltransferase PEP_mutase PF13714.6 gi|530549194|ref|YP_008429743.1| - 2.8e-08 33.5 0.7 5e-07 29.4 0.1 2.1 2 0 0 2 2 2 1 Phosphoenolpyruvate phosphomutase Amdase PF17645.1 gi|530549194|ref|YP_008429743.1| - 0.048 13.3 0.6 0.53 9.9 0.2 2.2 2 0 0 2 2 2 0 Arylmalonate decarboxylase Peptidase_U32 PF01136.19 gi|530549194|ref|YP_008429743.1| - 0.07 12.3 0.1 0.12 11.5 0.1 1.4 1 0 0 1 1 1 0 Peptidase family U32 Aminotran_1_2 PF00155.21 gi|530549195|ref|YP_008429744.1| - 6.5e-47 160.5 0.0 7.6e-47 160.2 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Met_gamma_lyase PF06838.11 gi|530549195|ref|YP_008429744.1| - 0.0002 20.0 0.0 0.00031 19.4 0.0 1.3 1 0 0 1 1 1 1 Methionine gamma-lyase Alliinase_C PF04864.13 gi|530549195|ref|YP_008429744.1| - 0.002 17.1 0.0 0.011 14.7 0.0 2.0 2 0 0 2 2 2 1 Allinase Cys_Met_Meta_PP PF01053.20 gi|530549195|ref|YP_008429744.1| - 0.011 14.3 0.0 0.015 13.9 0.0 1.2 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.19 gi|530549195|ref|YP_008429744.1| - 0.018 14.0 0.0 0.03 13.3 0.0 1.2 1 0 0 1 1 1 0 Aminotransferase class-V 14-3-3 PF00244.20 gi|530549195|ref|YP_008429744.1| - 0.036 13.6 0.1 0.074 12.5 0.1 1.4 1 0 0 1 1 1 0 14-3-3 protein Beta_elim_lyase PF01212.21 gi|530549195|ref|YP_008429744.1| - 0.037 13.3 0.0 0.051 12.9 0.0 1.2 1 0 0 1 1 1 0 Beta-eliminating lyase EamA PF00892.20 gi|530549196|ref|YP_008429745.1| - 1.7e-08 34.7 7.0 2e-08 34.5 7.0 1.2 1 0 0 1 1 1 1 EamA-like transporter family CD47 PF04549.14 gi|530549196|ref|YP_008429745.1| - 0.014 15.6 2.6 0.019 15.1 2.6 1.2 1 0 0 1 1 1 0 CD47 transmembrane region EamA PF00892.20 gi|530549197|ref|YP_008429746.1| - 1e-23 84.1 12.9 1.2e-23 83.9 12.9 1.0 1 0 0 1 1 1 1 EamA-like transporter family EmrE PF13536.6 gi|530549197|ref|YP_008429746.1| - 0.015 14.9 6.6 0.015 14.9 5.4 1.5 1 1 0 1 1 1 0 Putative multidrug resistance efflux transporter DMT_YdcZ PF04657.13 gi|530549197|ref|YP_008429746.1| - 0.036 14.3 2.1 0.063 13.5 2.1 1.4 1 0 0 1 1 1 0 Putative inner membrane exporter, YdcZ Ribosomal_S10 PF00338.22 gi|530549198|ref|YP_008429747.1| - 6.1e-28 96.9 0.1 6.8e-28 96.8 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e PriA_C PF18074.1 gi|530549198|ref|YP_008429747.1| - 0.014 16.2 0.2 0.023 15.5 0.1 1.4 2 0 0 2 2 2 0 Primosomal protein N C-terminal domain GTP_EFTU PF00009.27 gi|530549199|ref|YP_008429748.1| - 5.3e-60 202.3 0.1 7.3e-60 201.8 0.1 1.1 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.17 gi|530549199|ref|YP_008429748.1| - 6.3e-39 132.8 0.2 1.5e-38 131.6 0.2 1.7 1 0 0 1 1 1 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.25 gi|530549199|ref|YP_008429748.1| - 1.3e-18 67.1 2.7 2.4e-17 63.1 0.4 2.9 3 0 0 3 3 3 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|530549199|ref|YP_008429748.1| - 7.2e-06 26.1 0.1 2.8e-05 24.2 0.1 1.9 1 1 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|530549199|ref|YP_008429748.1| - 0.0048 16.4 0.5 0.036 13.6 0.2 2.5 2 1 0 2 2 2 1 Ferrous iron transport protein B RsgA_GTPase PF03193.16 gi|530549199|ref|YP_008429748.1| - 0.005 16.7 0.5 0.14 12.1 0.2 2.4 1 1 1 2 2 2 1 RsgA GTPase Dynamin_N PF00350.23 gi|530549199|ref|YP_008429748.1| - 0.046 13.8 0.1 9.9 6.2 0.0 2.8 2 1 1 3 3 3 0 Dynamin family GTP_EFTU_D4 PF14578.6 gi|530549199|ref|YP_008429748.1| - 0.072 13.0 0.2 0.2 11.6 0.2 1.7 1 0 0 1 1 1 0 Elongation factor Tu domain 4 Gtr1_RagA PF04670.12 gi|530549199|ref|YP_008429748.1| - 0.074 12.4 0.1 1.4 8.2 0.1 2.3 1 1 0 1 1 1 0 Gtr1/RagA G protein conserved region SRPRB PF09439.10 gi|530549199|ref|YP_008429748.1| - 0.2 11.1 0.2 3.4 7.1 0.0 2.4 1 1 0 2 2 2 0 Signal recognition particle receptor beta subunit Transglut_core PF01841.19 gi|530549200|ref|YP_008429749.1| - 0.015 15.7 0.0 0.022 15.2 0.0 1.2 1 0 0 1 1 1 0 Transglutaminase-like superfamily MFS_1 PF07690.16 gi|530549201|ref|YP_008429750.1| - 1.5e-32 112.9 30.4 1.5e-32 112.9 30.4 1.8 1 1 1 2 2 2 1 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|530549201|ref|YP_008429750.1| - 2.3e-07 30.1 11.6 2.3e-07 30.1 11.6 2.2 1 1 1 2 2 2 2 Sugar (and other) transporter DUF2985 PF11204.8 gi|530549201|ref|YP_008429750.1| - 0.13 12.4 6.3 0.14 12.4 1.7 3.2 2 2 0 2 2 2 0 Protein of unknown function (DUF2985) Radical_SAM PF04055.21 gi|530549202|ref|YP_008429751.1| - 1.7e-20 74.1 0.0 2.5e-20 73.5 0.0 1.2 1 0 0 1 1 1 1 Radical SAM superfamily SPASM PF13186.6 gi|530549202|ref|YP_008429751.1| - 1.9e-07 31.5 0.1 5.7e-07 30.0 0.1 1.9 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.6 gi|530549202|ref|YP_008429751.1| - 4.3e-06 27.1 1.3 2.4e-05 24.6 0.0 2.3 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|530549202|ref|YP_008429751.1| - 8.7e-06 25.9 0.0 1.8e-05 24.9 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_2 PF12797.7 gi|530549202|ref|YP_008429751.1| - 7.7 6.8 6.4 6.2 7.1 1.4 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain PqqD PF05402.12 gi|530549203|ref|YP_008429752.1| - 5.8e-08 32.9 0.1 7.4e-08 32.6 0.1 1.1 1 0 0 1 1 1 1 Coenzyme PQQ synthesis protein D (PqqD) Streptin-Immun PF11083.8 gi|530549203|ref|YP_008429752.1| - 0.0034 17.8 0.1 0.0041 17.5 0.1 1.1 1 0 0 1 1 1 1 Lantibiotic streptin immunity protein T2SSE PF00437.20 gi|530549207|ref|YP_008429756.1| - 5.8e-07 28.8 0.1 8.4e-07 28.3 0.1 1.1 1 0 0 1 1 1 1 Type II/IV secretion system protein Creatinase_N_2 PF16189.5 gi|530549207|ref|YP_008429756.1| - 0.0022 18.1 0.1 0.0044 17.1 0.1 1.5 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain AAA_16 PF13191.6 gi|530549207|ref|YP_008429756.1| - 0.0024 18.3 0.0 0.0031 17.9 0.0 1.3 1 1 0 1 1 1 1 AAA ATPase domain ABC_tran PF00005.27 gi|530549207|ref|YP_008429756.1| - 0.0024 18.4 0.0 0.004 17.7 0.0 1.6 1 1 0 1 1 1 1 ABC transporter CPT PF07931.12 gi|530549207|ref|YP_008429756.1| - 0.0048 16.8 0.0 0.0073 16.2 0.0 1.2 1 0 0 1 1 1 1 Chloramphenicol phosphotransferase-like protein AAA_25 PF13481.6 gi|530549207|ref|YP_008429756.1| - 0.0092 15.6 0.2 0.19 11.3 0.0 2.1 1 1 0 2 2 2 1 AAA domain MobB PF03205.14 gi|530549207|ref|YP_008429756.1| - 0.01 15.7 0.2 0.031 14.2 0.0 1.8 1 1 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B DMRL_synthase PF00885.19 gi|530549207|ref|YP_008429756.1| - 0.013 15.3 0.0 0.022 14.6 0.0 1.4 1 0 0 1 1 1 0 6,7-dimethyl-8-ribityllumazine synthase AAA_7 PF12775.7 gi|530549207|ref|YP_008429756.1| - 0.016 14.8 0.5 0.32 10.5 0.0 2.6 1 1 2 3 3 3 0 P-loop containing dynein motor region MMR_HSR1 PF01926.23 gi|530549207|ref|YP_008429756.1| - 0.017 15.2 0.2 0.035 14.2 0.2 1.8 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_22 PF13401.6 gi|530549207|ref|YP_008429756.1| - 0.019 15.3 0.1 0.044 14.1 0.1 1.7 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|530549207|ref|YP_008429756.1| - 0.035 13.8 0.0 0.07 12.9 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain Kinase-PPPase PF03618.14 gi|530549207|ref|YP_008429756.1| - 0.039 13.7 1.1 1.2 8.9 0.1 2.1 1 1 0 2 2 2 0 Kinase/pyrophosphorylase TniB PF05621.11 gi|530549207|ref|YP_008429756.1| - 0.039 13.4 0.5 0.4 10.0 0.5 2.2 1 1 0 1 1 1 0 Bacterial TniB protein DUF4423 PF14394.6 gi|530549207|ref|YP_008429756.1| - 0.048 13.4 0.1 0.096 12.4 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) AAA_18 PF13238.6 gi|530549207|ref|YP_008429756.1| - 0.075 13.6 0.2 0.16 12.5 0.2 1.6 1 1 0 1 1 1 0 AAA domain SRP54 PF00448.22 gi|530549207|ref|YP_008429756.1| - 0.077 12.6 0.5 0.35 10.5 0.5 1.8 1 1 0 1 1 1 0 SRP54-type protein, GTPase domain FtsK_SpoIIIE PF01580.18 gi|530549207|ref|YP_008429756.1| - 0.14 11.5 0.0 0.29 10.5 0.0 1.5 1 0 0 1 1 1 0 FtsK/SpoIIIE family Aminotran_5 PF00266.19 gi|530549208|ref|YP_008429757.1| - 4.3e-36 124.7 0.0 5.1e-36 124.4 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.21 gi|530549208|ref|YP_008429757.1| - 1.7e-08 34.0 0.0 3e-08 33.2 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.20 gi|530549208|ref|YP_008429757.1| - 2.2e-07 29.8 0.0 3.3e-07 29.2 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme GDC-P PF02347.16 gi|530549208|ref|YP_008429757.1| - 2.1e-05 23.6 0.0 2.8e-05 23.2 0.0 1.2 1 0 0 1 1 1 1 Glycine cleavage system P-protein Beta_elim_lyase PF01212.21 gi|530549208|ref|YP_008429757.1| - 0.0015 17.9 0.0 0.0039 16.5 0.0 1.8 1 1 0 1 1 1 1 Beta-eliminating lyase Peptidase_C26 PF07722.13 gi|530549210|ref|YP_008429759.1| - 1.1e-45 156.1 0.0 1.3e-45 155.8 0.0 1.0 1 0 0 1 1 1 1 Peptidase C26 GATase PF00117.28 gi|530549210|ref|YP_008429759.1| - 1.7e-18 67.1 0.0 3.5e-18 66.0 0.0 1.5 1 1 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.14 gi|530549210|ref|YP_008429759.1| - 0.00063 19.4 0.4 0.0013 18.3 0.0 1.9 2 1 0 2 2 2 1 CobB/CobQ-like glutamine amidotransferase domain AtuA PF07287.11 gi|530549211|ref|YP_008429760.1| - 2e-31 109.0 0.0 2.5e-31 108.7 0.0 1.2 1 0 0 1 1 1 1 Acyclic terpene utilisation family protein AtuA DUF4387 PF14330.6 gi|530549212|ref|YP_008429761.1| - 5.5e-37 126.4 0.0 6.3e-37 126.2 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4387) NAD_binding_6 PF08030.12 gi|530549212|ref|YP_008429761.1| - 0.055 13.6 0.0 0.07 13.3 0.0 1.1 1 0 0 1 1 1 0 Ferric reductase NAD binding domain DcuC PF03606.15 gi|530549213|ref|YP_008429762.1| - 1.2e-88 297.6 21.2 1.5e-88 297.3 21.2 1.0 1 0 0 1 1 1 1 C4-dicarboxylate anaerobic carrier ABG_transport PF03806.13 gi|530549213|ref|YP_008429762.1| - 6.4e-10 37.9 18.5 1.5e-07 30.0 7.1 2.3 2 0 0 2 2 2 2 AbgT putative transporter family Na_H_antiporter PF03553.14 gi|530549213|ref|YP_008429762.1| - 4.4e-09 36.0 12.8 4.4e-09 36.0 12.8 2.3 1 1 1 2 2 2 2 Na+/H+ antiporter family SCFA_trans PF02667.14 gi|530549213|ref|YP_008429762.1| - 3.3e-07 29.7 9.2 3.3e-07 29.7 9.2 2.1 2 0 0 2 2 2 1 Short chain fatty acid transporter OATP PF03137.20 gi|530549213|ref|YP_008429762.1| - 0.02 13.2 0.2 0.038 12.3 0.2 1.5 1 0 0 1 1 1 0 Organic Anion Transporter Polypeptide (OATP) family Ala_racemase_N PF01168.20 gi|530549214|ref|YP_008429763.1| - 7.9e-19 68.2 0.0 9.8e-19 67.9 0.0 1.1 1 0 0 1 1 1 1 Alanine racemase, N-terminal domain UDPG_MGDP_dh PF00984.19 gi|530549214|ref|YP_008429763.1| - 0.045 14.0 0.1 0.087 13.0 0.1 1.4 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, central domain NRD1_2 PF01995.16 gi|530549215|ref|YP_008429764.1| - 2e-57 194.2 3.4 2.5e-57 193.9 3.4 1.1 1 0 0 1 1 1 1 NrpR regulatory domains NRD1 and 2 HTH_12 PF08461.10 gi|530549215|ref|YP_008429764.1| - 4.3e-16 58.6 1.5 1.1e-15 57.3 0.2 2.3 2 0 0 2 2 2 1 Ribonuclease R winged-helix domain MarR PF01047.22 gi|530549215|ref|YP_008429764.1| - 5.9e-05 22.9 0.2 0.00047 20.0 0.0 2.7 3 1 0 3 3 3 1 MarR family HTH_20 PF12840.7 gi|530549215|ref|YP_008429764.1| - 0.00092 19.2 0.0 0.0021 18.1 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|530549215|ref|YP_008429764.1| - 0.00096 18.7 0.0 0.004 16.7 0.0 2.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_Tnp_Tc3_2 PF01498.18 gi|530549215|ref|YP_008429764.1| - 0.017 15.4 0.1 0.038 14.2 0.1 1.6 1 0 0 1 1 1 0 Transposase HTH_11 PF08279.12 gi|530549215|ref|YP_008429764.1| - 0.023 14.6 0.6 0.18 11.8 0.1 2.7 2 1 0 2 2 2 0 HTH domain DUF505 PF04458.12 gi|530549215|ref|YP_008429764.1| - 0.029 12.8 0.0 0.045 12.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF505) Penicillinase_R PF03965.16 gi|530549215|ref|YP_008429764.1| - 0.034 14.5 0.0 0.071 13.5 0.0 1.5 1 0 0 1 1 1 0 Penicillinase repressor LexA_DNA_bind PF01726.16 gi|530549215|ref|YP_008429764.1| - 0.05 13.4 0.0 1.6 8.5 0.0 2.9 2 1 1 3 3 3 0 LexA DNA binding domain Mrr_N PF14338.6 gi|530549215|ref|YP_008429764.1| - 0.11 12.6 0.0 0.32 11.1 0.0 1.8 1 0 0 1 1 1 0 Mrr N-terminal domain PaaX PF07848.12 gi|530549215|ref|YP_008429764.1| - 0.14 12.4 0.0 0.32 11.3 0.0 1.6 1 0 0 1 1 1 0 PaaX-like protein Ribosomal_L16 PF00252.18 gi|530549216|ref|YP_008429765.1| - 1.3e-30 106.1 0.1 1.6e-30 105.8 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L16p/L10e CbiZ PF01955.18 gi|530549217|ref|YP_008429766.1| - 1.1e-35 123.5 0.8 1.2e-35 123.3 0.8 1.0 1 0 0 1 1 1 1 Adenosylcobinamide amidohydrolase Peripla_BP_2 PF01497.18 gi|530549219|ref|YP_008429768.1| - 2.2e-44 151.8 0.1 3.4e-44 151.2 0.1 1.3 1 0 0 1 1 1 1 Periplasmic binding protein GATase_3 PF07685.14 gi|530549220|ref|YP_008429769.1| - 9.6e-50 168.9 0.0 1.4e-49 168.4 0.0 1.3 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.23 gi|530549220|ref|YP_008429769.1| - 3e-21 75.8 0.0 6.6e-21 74.7 0.0 1.5 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.6 gi|530549220|ref|YP_008429769.1| - 3.3e-17 63.0 0.0 2.2e-16 60.3 0.0 2.0 1 1 0 1 1 1 1 AAA domain TMEM131_like PF12371.8 gi|530549220|ref|YP_008429769.1| - 0.059 13.6 0.0 0.11 12.8 0.0 1.4 1 0 0 1 1 1 0 Transmembrane protein 131-like CdhC PF03598.15 gi|530549220|ref|YP_008429769.1| - 0.06 13.2 0.1 0.14 12.0 0.1 1.6 1 0 0 1 1 1 0 CO dehydrogenase/acetyl-CoA synthase complex beta subunit GATase PF00117.28 gi|530549220|ref|YP_008429769.1| - 0.14 11.9 0.0 0.3 10.8 0.0 1.5 1 0 0 1 1 1 0 Glutamine amidotransferase class-I GATase_5 PF13507.6 gi|530549220|ref|YP_008429769.1| - 0.17 11.0 0.0 0.29 10.2 0.0 1.3 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain NTP_transf_3 PF12804.7 gi|530549221|ref|YP_008429770.1| - 4.8e-14 53.0 0.0 5.1e-14 52.9 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain CTP_transf_3 PF02348.19 gi|530549221|ref|YP_008429770.1| - 0.00097 19.1 0.0 0.0019 18.1 0.0 1.6 1 1 0 1 1 1 1 Cytidylyltransferase DUF910 PF06014.11 gi|530549221|ref|YP_008429770.1| - 0.14 12.1 0.0 0.33 11.0 0.0 1.6 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF910) CPDase PF07823.11 gi|530549221|ref|YP_008429770.1| - 0.15 11.7 0.0 0.17 11.6 0.0 1.2 1 0 0 1 1 1 0 Cyclic phosphodiesterase-like protein PIN PF01850.21 gi|530549222|ref|YP_008429771.1| - 2.5e-14 53.8 0.2 3.1e-14 53.5 0.2 1.0 1 0 0 1 1 1 1 PIN domain DUF5615 PF18480.1 gi|530549222|ref|YP_008429771.1| - 0.01 15.6 0.0 0.026 14.3 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF5615) DUF2281 PF10047.9 gi|530549223|ref|YP_008429772.1| - 2.8e-13 50.3 1.2 4.4e-13 49.7 1.2 1.3 1 1 0 1 1 1 1 Protein of unknown function (DUF2281) CobS PF02654.15 gi|530549224|ref|YP_008429773.1| - 3.9e-38 131.7 5.2 4.6e-38 131.5 5.2 1.0 1 0 0 1 1 1 1 Cobalamin-5-phosphate synthase PgpA PF04608.13 gi|530549225|ref|YP_008429774.1| - 8.2e-10 38.9 0.0 9.8e-10 38.6 0.0 1.1 1 0 0 1 1 1 1 Phosphatidylglycerophosphatase A Diphthami_syn_2 PF01902.17 gi|530549226|ref|YP_008429775.1| - 1.5e-40 139.1 0.0 1.7e-40 138.9 0.0 1.0 1 0 0 1 1 1 1 Diphthamide synthase Lar_restr_allev PF14354.6 gi|530549227|ref|YP_008429776.1| - 7.4e-06 26.3 0.5 1.2e-05 25.6 0.5 1.4 1 1 0 1 1 1 1 Restriction alleviation protein Lar zf-C2HC5 PF06221.13 gi|530549227|ref|YP_008429776.1| - 0.0025 17.8 0.4 0.75 9.8 0.0 2.1 2 0 0 2 2 2 2 Putative zinc finger motif, C2HC5-type Zn-ribbon_8 PF09723.10 gi|530549227|ref|YP_008429776.1| - 0.13 12.4 0.7 3 8.1 0.1 2.2 2 0 0 2 2 2 0 Zinc ribbon domain TF_Zn_Ribbon PF08271.12 gi|530549227|ref|YP_008429776.1| - 0.16 11.5 1.6 2.8 7.5 0.2 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding A2L_zn_ribbon PF08792.10 gi|530549227|ref|YP_008429776.1| - 0.26 11.0 1.6 10 6.0 0.1 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain zf-ribbon_3 PF13248.6 gi|530549227|ref|YP_008429776.1| - 0.3 10.6 3.7 0.97 8.9 0.3 2.2 2 0 0 2 2 2 0 zinc-ribbon domain UDG PF03167.19 gi|530549228|ref|YP_008429777.1| - 1.6e-21 76.9 0.0 2.6e-21 76.2 0.0 1.3 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily HEM4 PF02602.15 gi|530549228|ref|YP_008429777.1| - 0.13 11.6 0.0 0.21 10.9 0.0 1.2 1 0 0 1 1 1 0 Uroporphyrinogen-III synthase HemD CobD_Cbib PF03186.13 gi|530549229|ref|YP_008429778.1| - 3.7e-79 265.8 0.0 4.5e-79 265.5 0.0 1.0 1 0 0 1 1 1 1 CobD/Cbib protein DUF373 PF04123.13 gi|530549229|ref|YP_008429778.1| - 0.0032 17.0 0.7 0.006 16.1 0.7 1.5 1 1 0 1 1 1 1 Domain of unknown function (DUF373) Aminotran_1_2 PF00155.21 gi|530549230|ref|YP_008429779.1| - 6.3e-34 117.7 0.0 7.9e-34 117.4 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II Alliinase_C PF04864.13 gi|530549230|ref|YP_008429779.1| - 0.0077 15.2 0.0 0.021 13.7 0.0 1.6 2 0 0 2 2 2 1 Allinase RE_Bsp6I PF09504.10 gi|530549230|ref|YP_008429779.1| - 0.063 12.9 0.0 0.12 11.9 0.0 1.4 1 0 0 1 1 1 0 Bsp6I restriction endonuclease TM231 PF10149.9 gi|530549231|ref|YP_008429780.1| - 0.018 14.4 2.1 0.019 14.3 2.1 1.0 1 0 0 1 1 1 0 Transmembrane protein 231 DUF2207 PF09972.9 gi|530549231|ref|YP_008429780.1| - 0.51 9.1 4.4 0.54 9.0 4.4 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) PhosphMutase PF10143.9 gi|530549232|ref|YP_008429781.1| - 3.9e-53 179.8 0.0 6.8e-53 179.0 0.0 1.4 1 0 0 1 1 1 1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Metalloenzyme PF01676.18 gi|530549232|ref|YP_008429781.1| - 4.6e-50 170.3 0.0 5.4e-50 170.1 0.0 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily Phosphodiest PF01663.22 gi|530549232|ref|YP_008429781.1| - 9.7e-09 35.3 0.0 1.8e-07 31.1 0.0 2.0 2 0 0 2 2 2 1 Type I phosphodiesterase / nucleotide pyrophosphatase Sulfatase PF00884.23 gi|530549232|ref|YP_008429781.1| - 0.00085 18.8 0.0 0.011 15.2 0.0 2.1 2 1 0 2 2 2 1 Sulfatase Alk_phosphatase PF00245.20 gi|530549232|ref|YP_008429781.1| - 0.0037 16.3 0.0 0.0075 15.3 0.0 1.5 1 0 0 1 1 1 1 Alkaline phosphatase DUF4023 PF13215.6 gi|530549232|ref|YP_008429781.1| - 0.047 13.7 0.6 0.11 12.6 0.6 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF4023) DUF2384 PF09722.10 gi|530549232|ref|YP_008429781.1| - 0.18 11.9 0.0 0.41 10.7 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2384) HIT PF01230.23 gi|530549233|ref|YP_008429782.1| - 4.2e-15 56.3 0.0 5.8e-15 55.8 0.0 1.2 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.8 gi|530549233|ref|YP_008429782.1| - 2.1e-07 31.4 0.0 3.4e-07 30.7 0.0 1.3 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.15 gi|530549233|ref|YP_008429782.1| - 0.00012 21.9 0.0 0.00017 21.4 0.0 1.3 1 0 0 1 1 1 1 Protein similar to CwfJ C-terminus 1 Alpha-amylase_C PF02806.18 gi|530549233|ref|YP_008429782.1| - 0.088 13.3 0.0 0.16 12.4 0.0 1.4 1 0 0 1 1 1 0 Alpha amylase, C-terminal all-beta domain DUF257 PF03192.13 gi|530549234|ref|YP_008429783.1| - 3e-51 174.2 3.7 3.3e-51 174.0 3.7 1.0 1 0 0 1 1 1 1 Pyrococcus protein of unknown function, DUF257 Thy1 PF02511.15 gi|530547466|ref|YP_008429784.1| - 2.1e-62 210.3 2.2 2.6e-62 210.0 2.2 1.0 1 0 0 1 1 1 1 Thymidylate synthase complementing protein OTCace PF00185.24 gi|530549235|ref|YP_008429785.1| - 2.3e-65 219.5 0.1 3.1e-65 219.0 0.1 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain OTCace_N PF02729.21 gi|530549235|ref|YP_008429785.1| - 4e-52 176.2 0.0 1.1e-51 174.8 0.0 1.7 2 0 0 2 2 2 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain THF_DHG_CYH_C PF02882.19 gi|530549235|ref|YP_008429785.1| - 0.055 12.8 0.0 0.13 11.6 0.0 1.6 1 0 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain HAD_2 PF13419.6 gi|530549236|ref|YP_008429786.1| - 1.1e-15 58.2 0.1 1.8e-15 57.5 0.1 1.4 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|530549236|ref|YP_008429786.1| - 1.3e-09 38.6 0.0 1.8e-09 38.2 0.0 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|530549236|ref|YP_008429786.1| - 0.00011 22.2 0.0 0.00021 21.3 0.0 1.5 1 0 0 1 1 1 1 HAD-hyrolase-like AAA_5 PF07728.14 gi|530549237|ref|YP_008429787.1| - 1.9e-06 27.9 0.0 4.3e-06 26.8 0.0 1.5 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 gi|530549237|ref|YP_008429787.1| - 1.7e-05 25.1 0.0 0.00016 22.0 0.0 2.5 3 0 0 3 3 3 1 AAA domain AAA_18 PF13238.6 gi|530549237|ref|YP_008429787.1| - 8.9e-05 23.0 0.3 0.012 16.2 0.0 3.3 3 1 0 3 3 3 1 AAA domain Utp13 PF08625.11 gi|530549237|ref|YP_008429787.1| - 0.0011 18.9 2.8 0.0073 16.2 0.2 3.1 4 0 0 4 4 4 1 Utp13 specific WD40 associated domain ResIII PF04851.15 gi|530549237|ref|YP_008429787.1| - 0.0027 17.7 0.0 0.0091 16.0 0.0 1.9 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_16 PF13191.6 gi|530549237|ref|YP_008429787.1| - 0.0044 17.4 0.1 0.038 14.4 0.0 2.5 2 1 1 3 3 3 1 AAA ATPase domain AAA PF00004.29 gi|530549237|ref|YP_008429787.1| - 0.0093 16.4 0.0 0.2 12.1 0.0 2.8 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.6 gi|530549237|ref|YP_008429787.1| - 0.021 14.9 0.0 0.1 12.6 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_7 PF12775.7 gi|530549237|ref|YP_008429787.1| - 0.024 14.1 0.1 0.42 10.1 0.0 2.7 3 0 0 3 3 3 0 P-loop containing dynein motor region AAA_30 PF13604.6 gi|530549237|ref|YP_008429787.1| - 0.054 13.2 0.0 0.085 12.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain T2SSE PF00437.20 gi|530549237|ref|YP_008429787.1| - 0.058 12.4 0.0 0.1 11.6 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein SMI1_KNR4 PF09346.10 gi|530549237|ref|YP_008429787.1| - 0.075 13.4 0.7 1.4 9.3 0.0 3.0 2 1 1 3 3 3 0 SMI1 / KNR4 family (SUKH-1) DUF5109 PF17134.4 gi|530549237|ref|YP_008429787.1| - 0.075 12.9 0.2 0.075 12.9 0.2 2.2 3 0 0 3 3 3 0 Domain of unknown function (DUF5109) DUF2357 PF09823.9 gi|530549238|ref|YP_008429788.1| - 2.1e-37 128.7 4.0 4.3e-36 124.5 4.0 2.2 1 1 0 1 1 1 1 Domain of unknown function (DUF2357) PDDEXK_7 PF04411.12 gi|530549238|ref|YP_008429788.1| - 8.7e-19 68.1 0.1 1.9e-18 67.0 0.1 1.6 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily DUF1542 PF07564.11 gi|530549238|ref|YP_008429788.1| - 0.024 14.7 0.0 0.081 13.0 0.0 1.9 1 0 0 1 1 1 0 Domain of Unknown Function (DUF1542) Prok-RING_1 PF14446.6 gi|530549239|ref|YP_008429789.1| - 0.09 12.7 0.2 0.14 12.1 0.2 1.2 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 zf-C2H2_3 PF13878.6 gi|530549239|ref|YP_008429789.1| - 0.27 11.1 1.1 0.44 10.4 0.0 1.8 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO PolC_DP2 PF03833.13 gi|530549240|ref|YP_008429790.1| - 0 1250.9 0.1 0 1250.9 0.1 1.7 2 0 0 2 2 2 1 DNA polymerase II large subunit DP2 zinc-ribbons_6 PF07191.12 gi|530549240|ref|YP_008429790.1| - 4.1e-05 23.5 10.5 0.17 11.9 4.9 3.3 2 1 1 3 3 3 3 zinc-ribbons HypA PF01155.19 gi|530549240|ref|YP_008429790.1| - 0.0029 17.6 14.2 0.36 10.9 0.1 3.6 2 1 1 3 3 3 3 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn-ribbon_8 PF09723.10 gi|530549240|ref|YP_008429790.1| - 0.019 15.1 24.3 0.63 10.2 2.2 4.0 3 1 0 3 3 3 0 Zinc ribbon domain DZR PF12773.7 gi|530549240|ref|YP_008429790.1| - 0.032 14.2 17.3 1.3 9.1 0.7 2.6 2 0 0 2 2 2 0 Double zinc ribbon Ogr_Delta PF04606.12 gi|530549240|ref|YP_008429790.1| - 0.67 10.0 10.5 12 5.9 0.2 4.4 4 0 0 4 4 4 0 Ogr/Delta-like zinc finger zf-CHY PF05495.12 gi|530549240|ref|YP_008429790.1| - 0.9 10.1 11.2 2.3 8.8 3.9 3.0 2 1 1 3 3 3 0 CHY zinc finger zf-C4_Topoisom PF01396.19 gi|530549240|ref|YP_008429790.1| - 1.4 8.8 20.1 0.14 11.9 0.2 4.5 3 1 1 4 4 4 0 Topoisomerase DNA binding C4 zinc finger zf-ribbon_3 PF13248.6 gi|530549240|ref|YP_008429790.1| - 3.6 7.1 27.7 0.088 12.2 1.0 4.3 3 2 0 3 3 3 0 zinc-ribbon domain NRDD PF13597.6 gi|530549240|ref|YP_008429790.1| - 4.6 5.9 17.1 0.72 8.6 2.2 3.3 2 1 1 3 3 3 0 Anaerobic ribonucleoside-triphosphate reductase Zn_Tnp_IS91 PF14319.6 gi|530549240|ref|YP_008429790.1| - 5.4 7.1 10.8 5.7 7.1 3.6 3.1 2 1 1 3 3 3 0 Transposase zinc-binding domain PhnA_Zn_Ribbon PF08274.12 gi|530549240|ref|YP_008429790.1| - 6.5 6.8 13.6 1.1e+02 2.8 0.1 3.5 2 1 0 2 2 2 0 PhnA Zinc-Ribbon DNA_pol_E_B PF04042.16 gi|530549241|ref|YP_008429791.1| - 4.3e-16 58.9 0.0 7.9e-16 58.0 0.0 1.4 1 0 0 1 1 1 1 DNA polymerase alpha/epsilon subunit B Metallophos PF00149.28 gi|530549241|ref|YP_008429791.1| - 3.8e-11 43.9 0.2 7e-11 43.0 0.2 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase tRNA_anti-codon PF01336.25 gi|530549241|ref|YP_008429791.1| - 0.00014 21.8 0.1 0.00033 20.6 0.1 1.6 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain Metallophos_2 PF12850.7 gi|530549241|ref|YP_008429791.1| - 0.00022 21.5 0.0 0.00063 20.0 0.0 1.7 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain ASD2 PF08687.11 gi|530549241|ref|YP_008429791.1| - 0.29 10.6 6.8 0.43 10.1 6.8 1.2 1 0 0 1 1 1 0 Apx/Shroom domain ASD2 Cdc6_C PF09079.11 gi|530549242|ref|YP_008429792.1| - 3.6e-26 91.0 0.0 1e-25 89.5 0.0 1.8 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain AAA_16 PF13191.6 gi|530549242|ref|YP_008429792.1| - 7e-10 39.5 0.3 1.3e-08 35.4 0.0 2.5 2 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|530549242|ref|YP_008429792.1| - 4e-09 36.8 0.0 1.2e-08 35.3 0.0 1.8 2 0 0 2 2 1 1 AAA domain AAA PF00004.29 gi|530549242|ref|YP_008429792.1| - 5.6e-09 36.5 0.2 2.3e-08 34.5 0.1 2.1 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) TniB PF05621.11 gi|530549242|ref|YP_008429792.1| - 7.6e-07 28.7 0.1 1.9e-06 27.5 0.1 1.6 1 0 0 1 1 1 1 Bacterial TniB protein ATPase_2 PF01637.18 gi|530549242|ref|YP_008429792.1| - 6.5e-05 23.0 2.4 0.00028 20.9 2.4 2.0 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea NB-ARC PF00931.22 gi|530549242|ref|YP_008429792.1| - 0.00022 20.5 0.1 0.00046 19.4 0.1 1.5 1 0 0 1 1 1 1 NB-ARC domain DEAD PF00270.29 gi|530549242|ref|YP_008429792.1| - 0.0026 17.5 1.2 0.47 10.2 0.1 2.4 1 1 0 2 2 2 1 DEAD/DEAH box helicase DUF2075 PF09848.9 gi|530549242|ref|YP_008429792.1| - 0.0029 16.9 0.0 0.0044 16.3 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) Kinesin PF00225.23 gi|530549242|ref|YP_008429792.1| - 0.0043 16.0 0.0 0.0069 15.3 0.0 1.3 1 0 0 1 1 1 1 Kinesin motor domain AAA_32 PF13654.6 gi|530549242|ref|YP_008429792.1| - 0.0053 15.6 1.7 0.015 14.1 0.1 2.0 2 0 0 2 2 2 1 AAA domain NACHT PF05729.12 gi|530549242|ref|YP_008429792.1| - 0.0064 16.4 0.0 0.019 14.9 0.0 1.8 2 0 0 2 2 2 1 NACHT domain DUF815 PF05673.13 gi|530549242|ref|YP_008429792.1| - 0.0082 15.3 0.1 0.032 13.4 0.0 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF815) AAA_24 PF13479.6 gi|530549242|ref|YP_008429792.1| - 0.0093 15.7 0.3 0.019 14.7 0.3 1.5 1 1 0 1 1 1 1 AAA domain Microtub_bd PF16796.5 gi|530549242|ref|YP_008429792.1| - 0.0098 15.8 0.0 0.024 14.5 0.0 1.7 1 0 0 1 1 1 1 Microtubule binding AAA_2 PF07724.14 gi|530549242|ref|YP_008429792.1| - 0.014 15.5 0.0 0.06 13.5 0.0 2.0 2 1 0 2 2 2 0 AAA domain (Cdc48 subfamily) Sigma54_activat PF00158.26 gi|530549242|ref|YP_008429792.1| - 0.016 14.9 0.0 0.074 12.8 0.0 2.0 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA_assoc_2 PF16193.5 gi|530549242|ref|YP_008429792.1| - 0.022 15.1 0.5 0.069 13.5 0.1 2.0 2 1 0 2 2 2 0 AAA C-terminal domain DUF87 PF01935.17 gi|530549242|ref|YP_008429792.1| - 0.028 14.5 0.1 0.27 11.3 0.0 2.4 2 0 0 2 2 2 0 Helicase HerA, central domain PIF1 PF05970.14 gi|530549242|ref|YP_008429792.1| - 0.036 13.3 0.0 0.071 12.3 0.0 1.4 1 0 0 1 1 1 0 PIF1-like helicase RNA_helicase PF00910.22 gi|530549242|ref|YP_008429792.1| - 0.051 14.0 0.0 0.12 12.8 0.0 1.6 1 0 0 1 1 1 0 RNA helicase AAA_7 PF12775.7 gi|530549242|ref|YP_008429792.1| - 0.073 12.6 0.0 0.13 11.8 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region FtsK_SpoIIIE PF01580.18 gi|530549242|ref|YP_008429792.1| - 0.11 11.8 0.1 0.48 9.7 0.0 1.9 2 0 0 2 2 2 0 FtsK/SpoIIIE family TIP49 PF06068.13 gi|530549243|ref|YP_008429793.1| - 8.6e-141 469.2 2.3 1e-140 468.9 2.3 1.1 1 0 0 1 1 1 1 TIP49 P-loop domain TIP49_C PF17856.1 gi|530549243|ref|YP_008429793.1| - 9.5e-23 80.1 0.1 3.8e-22 78.2 0.1 2.1 2 0 0 2 2 1 1 TIP49 AAA-lid domain AAA PF00004.29 gi|530549243|ref|YP_008429793.1| - 5.8e-11 43.0 0.2 9.9e-07 29.2 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 gi|530549243|ref|YP_008429793.1| - 1.3e-08 34.7 0.2 3.9e-05 23.4 0.1 2.4 2 0 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_22 PF13401.6 gi|530549243|ref|YP_008429793.1| - 0.00014 22.1 0.0 0.87 9.9 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.6 gi|530549243|ref|YP_008429793.1| - 0.00016 22.1 0.2 0.001 19.5 0.2 2.2 1 1 0 1 1 1 1 AAA ATPase domain AAA_19 PF13245.6 gi|530549243|ref|YP_008429793.1| - 0.00049 20.5 0.2 0.57 10.5 0.0 2.3 2 0 0 2 2 2 2 AAA domain ResIII PF04851.15 gi|530549243|ref|YP_008429793.1| - 0.00067 19.7 0.1 0.045 13.8 0.0 2.4 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit AAA_5 PF07728.14 gi|530549243|ref|YP_008429793.1| - 0.0012 18.9 0.1 0.023 14.7 0.0 2.5 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) DnaB_C PF03796.15 gi|530549243|ref|YP_008429793.1| - 0.0016 17.8 0.1 0.004 16.5 0.0 1.7 2 0 0 2 2 2 1 DnaB-like helicase C terminal domain Zeta_toxin PF06414.12 gi|530549243|ref|YP_008429793.1| - 0.0019 17.5 0.2 0.0055 16.0 0.2 1.7 1 0 0 1 1 1 1 Zeta toxin Mg_chelatase PF01078.21 gi|530549243|ref|YP_008429793.1| - 0.0021 17.5 1.0 0.06 12.7 0.3 2.4 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.26 gi|530549243|ref|YP_008429793.1| - 0.0021 17.8 0.2 0.13 11.9 0.1 2.5 2 0 0 2 2 2 1 Sigma-54 interaction domain DNA_pol3_delta PF06144.13 gi|530549243|ref|YP_008429793.1| - 0.0032 17.3 0.1 0.015 15.1 0.1 2.0 2 0 0 2 2 2 1 DNA polymerase III, delta subunit AAA_25 PF13481.6 gi|530549243|ref|YP_008429793.1| - 0.0045 16.6 0.0 0.0088 15.6 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_7 PF12775.7 gi|530549243|ref|YP_008429793.1| - 0.0056 16.2 0.1 0.016 14.7 0.0 1.7 2 0 0 2 2 2 1 P-loop containing dynein motor region TsaE PF02367.17 gi|530549243|ref|YP_008429793.1| - 0.0059 16.6 0.2 0.016 15.2 0.2 1.7 1 0 0 1 1 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE T2SSE PF00437.20 gi|530549243|ref|YP_008429793.1| - 0.0065 15.6 1.7 0.069 12.2 0.2 2.6 2 1 1 3 3 3 1 Type II/IV secretion system protein Bac_DnaA PF00308.18 gi|530549243|ref|YP_008429793.1| - 0.017 15.0 0.3 0.16 11.7 0.1 2.2 2 0 0 2 2 2 0 Bacterial dnaA protein AAA_18 PF13238.6 gi|530549243|ref|YP_008429793.1| - 0.026 15.1 0.0 0.14 12.7 0.0 2.2 2 0 0 2 2 2 0 AAA domain ABC_tran PF00005.27 gi|530549243|ref|YP_008429793.1| - 0.034 14.7 0.2 0.087 13.3 0.1 1.8 2 0 0 2 2 1 0 ABC transporter DEAD PF00270.29 gi|530549243|ref|YP_008429793.1| - 0.039 13.7 3.0 0.19 11.5 1.3 2.6 2 1 0 2 2 2 0 DEAD/DEAH box helicase AAA_17 PF13207.6 gi|530549243|ref|YP_008429793.1| - 0.04 14.3 0.3 0.28 11.6 0.1 2.5 3 0 0 3 3 2 0 AAA domain RNA_helicase PF00910.22 gi|530549243|ref|YP_008429793.1| - 0.048 14.1 0.0 0.094 13.1 0.0 1.5 1 0 0 1 1 1 0 RNA helicase AAA_23 PF13476.6 gi|530549243|ref|YP_008429793.1| - 0.056 13.9 5.1 0.14 12.6 5.1 2.0 1 1 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|530549243|ref|YP_008429793.1| - 0.062 13.2 0.0 0.12 12.3 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_33 PF13671.6 gi|530549243|ref|YP_008429793.1| - 0.065 13.4 0.0 0.16 12.2 0.0 1.7 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 gi|530549243|ref|YP_008429793.1| - 0.088 12.5 0.1 0.19 11.4 0.1 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein Gar1 PF04410.14 gi|530549244|ref|YP_008429794.1| - 6.6e-10 39.0 0.0 7e-10 38.9 0.0 1.0 1 0 0 1 1 1 1 Gar1/Naf1 RNA binding region TFIIB PF00382.19 gi|530549245|ref|YP_008429795.1| - 4.2e-40 135.6 1.5 9.9e-20 70.4 0.1 2.2 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|530549245|ref|YP_008429795.1| - 5.9e-17 60.9 0.3 1.2e-16 59.9 0.3 1.5 1 0 0 1 1 1 1 TFIIB zinc-binding Sigma70_r4 PF04545.16 gi|530549245|ref|YP_008429795.1| - 0.00014 21.3 0.6 0.0016 17.9 0.1 2.8 2 0 0 2 2 2 1 Sigma-70, region 4 Cyclin_N PF00134.23 gi|530549245|ref|YP_008429795.1| - 0.00038 20.2 0.0 0.21 11.4 0.0 2.2 2 0 0 2 2 2 2 Cyclin, N-terminal domain Ribosomal_S27e PF01667.17 gi|530549245|ref|YP_008429795.1| - 0.0011 18.6 0.1 0.0018 17.9 0.1 1.3 1 0 0 1 1 1 1 Ribosomal protein S27 Lar_restr_allev PF14354.6 gi|530549245|ref|YP_008429795.1| - 0.0065 16.8 0.2 0.019 15.3 0.2 1.8 1 0 0 1 1 1 1 Restriction alleviation protein Lar HTH_3 PF01381.22 gi|530549245|ref|YP_008429795.1| - 0.0093 16.0 0.6 0.53 10.4 0.1 3.3 3 0 0 3 3 3 1 Helix-turn-helix zf-ribbon_3 PF13248.6 gi|530549245|ref|YP_008429795.1| - 0.015 14.7 3.9 0.18 11.3 3.9 2.2 1 1 0 1 1 1 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|530549245|ref|YP_008429795.1| - 0.015 15.2 0.2 0.033 14.1 0.2 1.5 1 0 0 1 1 1 0 Putative transposase DNA-binding domain HTH_11 PF08279.12 gi|530549245|ref|YP_008429795.1| - 0.018 14.9 0.2 5.8 6.9 0.0 2.7 2 0 0 2 2 2 0 HTH domain HTH_Tnp_ISL3 PF13542.6 gi|530549245|ref|YP_008429795.1| - 0.026 13.9 0.2 0.085 12.3 0.2 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 GerE PF00196.19 gi|530549245|ref|YP_008429795.1| - 0.029 13.9 0.1 0.88 9.2 0.1 2.6 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family zf-tcix PF14952.6 gi|530549245|ref|YP_008429795.1| - 0.029 14.0 0.2 0.077 12.6 0.2 1.7 1 0 0 1 1 1 0 Putative treble-clef, zinc-finger, Zn-binding RB_B PF01857.20 gi|530549245|ref|YP_008429795.1| - 0.029 14.4 0.0 0.065 13.3 0.0 1.6 1 0 0 1 1 1 0 Retinoblastoma-associated protein B domain PADR1 PF08063.12 gi|530549245|ref|YP_008429795.1| - 0.03 14.1 0.6 0.05 13.4 0.6 1.3 1 0 0 1 1 1 0 PADR1 (NUC008) domain Sigma70_r4_2 PF08281.12 gi|530549245|ref|YP_008429795.1| - 0.031 14.0 0.2 0.27 10.9 0.1 2.7 3 0 0 3 3 2 0 Sigma-70, region 4 HTH_AsnC-type PF13404.6 gi|530549245|ref|YP_008429795.1| - 0.043 13.6 3.5 0.3 10.9 0.1 3.6 4 0 0 4 4 4 0 AsnC-type helix-turn-helix domain DUF2318 PF10080.9 gi|530549245|ref|YP_008429795.1| - 0.13 12.4 0.1 0.26 11.4 0.1 1.4 1 0 0 1 1 1 0 Predicted membrane protein (DUF2318) UMPH-1 PF05822.12 gi|530549245|ref|YP_008429795.1| - 0.14 11.6 0.0 0.21 11.1 0.0 1.2 1 0 0 1 1 1 0 Pyrimidine 5'-nucleotidase (UMPH-1) DZR PF12773.7 gi|530549245|ref|YP_008429795.1| - 0.16 12.1 0.1 0.28 11.3 0.1 1.3 1 0 0 1 1 1 0 Double zinc ribbon TrmB PF01978.19 gi|530549245|ref|YP_008429795.1| - 0.17 11.8 1.5 6.8 6.7 0.3 2.8 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB PhnA_Zn_Ribbon PF08274.12 gi|530549245|ref|YP_008429795.1| - 0.18 11.8 0.5 0.37 10.8 0.5 1.4 1 0 0 1 1 1 0 PhnA Zinc-Ribbon Cyclin_C PF02984.19 gi|530549245|ref|YP_008429795.1| - 0.21 11.7 0.0 18 5.5 0.0 2.2 2 0 0 2 2 2 0 Cyclin, C-terminal domain zinc_ribbon_2 PF13240.6 gi|530549245|ref|YP_008429795.1| - 0.22 11.3 0.8 9.3 6.1 0.0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Metallophos_2 PF12850.7 gi|530549246|ref|YP_008429796.1| - 1.1e-30 107.0 0.0 1.4e-30 106.7 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|530549246|ref|YP_008429796.1| - 4.7e-08 33.8 1.9 1.3e-05 25.8 0.9 2.3 1 1 1 2 2 2 2 Calcineurin-like phosphoesterase CBFD_NFYB_HMF PF00808.23 gi|530549247|ref|YP_008429797.1| - 4.3e-20 71.8 0.5 4.7e-20 71.6 0.5 1.0 1 0 0 1 1 1 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Histone PF00125.24 gi|530549247|ref|YP_008429797.1| - 2.2e-10 41.0 0.2 2.4e-10 40.9 0.2 1.1 1 0 0 1 1 1 1 Core histone H2A/H2B/H3/H4 CENP-T_C PF15511.6 gi|530549247|ref|YP_008429797.1| - 9.7e-08 32.1 0.1 9.7e-08 32.1 0.1 1.0 1 0 0 1 1 1 1 Centromere kinetochore component CENP-T histone fold CENP-S PF15630.6 gi|530549247|ref|YP_008429797.1| - 4.3e-07 30.2 0.0 4.5e-07 30.2 0.0 1.1 1 0 0 1 1 1 1 CENP-S protein Bromo_TP PF07524.13 gi|530549247|ref|YP_008429797.1| - 1.9e-06 27.8 0.0 2.1e-06 27.6 0.0 1.0 1 0 0 1 1 1 1 Bromodomain associated TFIID-31kDa PF02291.15 gi|530549247|ref|YP_008429797.1| - 4.4e-06 26.8 0.0 4.9e-06 26.6 0.0 1.0 1 0 0 1 1 1 1 Transcription initiation factor IID, 31kD subunit TAF PF02969.17 gi|530549247|ref|YP_008429797.1| - 5.3e-06 26.5 0.2 5.6e-06 26.4 0.2 1.1 1 0 0 1 1 1 1 TATA box binding protein associated factor (TAF) TFIID-18kDa PF02269.16 gi|530549247|ref|YP_008429797.1| - 8e-05 22.6 0.0 8.7e-05 22.5 0.0 1.1 1 0 0 1 1 1 1 Transcription initiation factor IID, 18kD subunit TFIID_20kDa PF03847.13 gi|530549247|ref|YP_008429797.1| - 0.00025 21.5 0.0 0.00028 21.3 0.0 1.1 1 0 0 1 1 1 1 Transcription initiation factor TFIID subunit A DUF1931 PF09123.11 gi|530549247|ref|YP_008429797.1| - 0.03 14.4 0.3 0.037 14.1 0.3 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1931) PE PF00934.20 gi|530549247|ref|YP_008429797.1| - 0.034 14.5 0.0 0.04 14.2 0.0 1.1 1 0 0 1 1 1 0 PE family CENP-X PF09415.10 gi|530549247|ref|YP_008429797.1| - 0.084 13.2 1.1 0.1 13.0 1.1 1.1 1 0 0 1 1 1 0 CENP-S associating Centromere protein X DUF4923 PF16270.5 gi|530549247|ref|YP_008429797.1| - 0.12 12.2 0.1 0.13 12.1 0.1 1.1 1 0 0 1 1 1 0 Lipocalin-like domain (DUF4923) PCP_red PF08369.10 gi|530549247|ref|YP_008429797.1| - 0.13 12.5 3.8 2.2 8.6 1.6 2.9 1 1 1 2 2 2 0 Proto-chlorophyllide reductase 57 kD subunit SepF PF04472.12 gi|530549248|ref|YP_008429798.1| - 3.4e-15 56.1 0.4 4.7e-15 55.6 0.4 1.2 1 0 0 1 1 1 1 Cell division protein SepF Peptidase_C39_2 PF13529.6 gi|530549248|ref|YP_008429798.1| - 0.039 14.5 0.0 0.045 14.3 0.0 1.1 1 0 0 1 1 1 0 Peptidase_C39 like family zf-ZPR1 PF03367.13 gi|530549249|ref|YP_008429799.1| - 8.8e-40 136.2 0.2 1e-39 135.9 0.2 1.1 1 0 0 1 1 1 1 ZPR1 zinc-finger domain Lar_restr_allev PF14354.6 gi|530549249|ref|YP_008429799.1| - 4.1e-05 23.9 0.1 9.1e-05 22.8 0.1 1.5 1 0 0 1 1 1 1 Restriction alleviation protein Lar TF_Zn_Ribbon PF08271.12 gi|530549249|ref|YP_008429799.1| - 0.025 14.1 1.3 0.11 12.0 1.3 2.1 1 1 0 1 1 1 0 TFIIB zinc-binding Prim_Zn_Ribbon PF08273.12 gi|530549249|ref|YP_008429799.1| - 0.029 14.6 2.8 0.33 11.3 2.8 2.1 1 1 0 1 1 1 0 Zinc-binding domain of primase-helicase PhnA_Zn_Ribbon PF08274.12 gi|530549249|ref|YP_008429799.1| - 0.048 13.6 0.1 0.079 12.9 0.1 1.3 1 0 0 1 1 1 0 PhnA Zinc-Ribbon Rubredoxin_2 PF18073.1 gi|530549249|ref|YP_008429799.1| - 0.067 12.9 0.2 14 5.5 0.1 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain ASCH PF04266.14 gi|530549250|ref|YP_008429800.1| - 6.9e-06 26.6 0.1 1e-05 26.1 0.1 1.3 1 0 0 1 1 1 1 ASCH domain WVELL PF14043.6 gi|530549250|ref|YP_008429800.1| - 0.087 12.7 0.4 2.7 7.9 0.3 2.3 2 0 0 2 2 2 0 WVELL protein Homoserine_dh PF00742.19 gi|530549251|ref|YP_008429801.1| - 3.4e-49 167.1 0.0 4.7e-49 166.6 0.0 1.2 1 0 0 1 1 1 1 Homoserine dehydrogenase NAD_binding_3 PF03447.16 gi|530549251|ref|YP_008429801.1| - 3.6e-11 43.7 0.1 8.7e-11 42.5 0.1 1.7 1 1 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain ELFV_dehydrog PF00208.21 gi|530549251|ref|YP_008429801.1| - 2.5e-05 24.1 0.1 5.3e-05 23.0 0.1 1.6 1 1 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Sacchrp_dh_NADP PF03435.18 gi|530549251|ref|YP_008429801.1| - 0.0065 16.7 0.1 0.024 14.9 0.1 2.0 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain HIGH_NTase1_ass PF16581.5 gi|530549251|ref|YP_008429801.1| - 0.012 15.6 0.1 0.039 13.9 0.1 1.8 2 0 0 2 2 2 0 Cytidyltransferase-related C-terminal region T2SSF PF00482.23 gi|530549251|ref|YP_008429801.1| - 0.08 12.9 0.0 17 5.4 0.0 2.5 3 0 0 3 3 3 0 Type II secretion system (T2SS), protein F CBS PF00571.28 gi|530549252|ref|YP_008429802.1| - 1.4e-43 147.1 14.8 5.5e-14 52.4 0.9 4.2 4 0 0 4 4 4 4 CBS domain PRC PF05239.16 gi|530549252|ref|YP_008429802.1| - 0.035 14.2 3.0 2.6 8.2 0.1 3.5 3 1 0 3 3 3 0 PRC-barrel domain potato_inhibit PF00280.18 gi|530549252|ref|YP_008429802.1| - 0.039 14.6 0.6 0.096 13.4 0.3 1.9 2 0 0 2 2 2 0 Potato inhibitor I family sCache_3_2 PF17203.4 gi|530549252|ref|YP_008429802.1| - 0.088 12.9 0.2 24 5.0 0.0 3.4 4 0 0 4 4 4 0 Single cache domain 3 SurE PF01975.17 gi|530549253|ref|YP_008429803.1| - 5.1e-55 186.3 0.0 6.7e-55 185.9 0.0 1.1 1 0 0 1 1 1 1 Survival protein SurE DUF996 PF06195.13 gi|530549254|ref|YP_008429804.1| - 1.4e-27 96.6 16.8 1.4e-27 96.6 16.8 1.4 2 0 0 2 2 2 1 Protein of unknown function (DUF996) MotA_ExbB PF01618.16 gi|530549254|ref|YP_008429804.1| - 0.0036 17.0 6.0 0.013 15.3 2.8 2.2 2 0 0 2 2 2 1 MotA/TolQ/ExbB proton channel family LapA_dom PF06305.11 gi|530549254|ref|YP_008429804.1| - 0.022 14.5 0.1 0.022 14.5 0.1 4.0 4 1 0 4 4 4 0 Lipopolysaccharide assembly protein A domain L6_membrane PF05805.12 gi|530549254|ref|YP_008429804.1| - 0.046 13.3 0.7 0.046 13.3 0.7 1.6 2 0 0 2 2 2 0 L6 membrane protein Cyt_bd_oxida_II PF02322.15 gi|530549254|ref|YP_008429804.1| - 0.085 12.2 13.1 0.11 11.8 13.1 1.2 1 0 0 1 1 1 0 Cytochrome bd terminal oxidase subunit II DHHC PF01529.20 gi|530549254|ref|YP_008429804.1| - 1.3 9.1 9.1 3.6 7.7 2.2 2.1 2 0 0 2 2 2 0 DHHC palmitoyltransferase FA_desaturase PF00487.24 gi|530549254|ref|YP_008429804.1| - 7.6 6.3 8.0 8.7 6.1 7.0 1.6 1 1 1 2 2 2 0 Fatty acid desaturase Virul_fac_BrkB PF03631.15 gi|530549254|ref|YP_008429804.1| - 9.5 5.7 22.5 2.8 7.5 15.5 2.5 1 1 1 2 2 2 0 Virulence factor BrkB Radical_SAM PF04055.21 gi|530549255|ref|YP_008429805.1| - 3.3e-09 37.3 0.1 1e-08 35.7 0.1 1.8 1 1 1 2 2 2 1 Radical SAM superfamily Radical_SAM_C PF16199.5 gi|530549255|ref|YP_008429805.1| - 0.16 12.1 0.0 0.96 9.5 0.0 2.2 2 0 0 2 2 2 0 Radical_SAM C-terminal domain Fer4 PF00037.27 gi|530549256|ref|YP_008429806.1| - 1.2e-11 43.9 11.7 3.7e-06 26.5 1.8 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|530549256|ref|YP_008429806.1| - 3.8e-11 43.4 5.8 5.3e-11 42.9 5.8 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|530549256|ref|YP_008429806.1| - 1.5e-08 34.7 16.3 1.2e-05 25.3 9.1 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|530549256|ref|YP_008429806.1| - 2.9e-08 33.7 6.4 0.00057 20.0 0.8 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|530549256|ref|YP_008429806.1| - 2.2e-06 27.5 10.4 0.0062 16.6 1.3 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|530549256|ref|YP_008429806.1| - 3e-06 27.0 11.1 0.00086 19.3 1.6 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|530549256|ref|YP_008429806.1| - 4.5e-06 27.5 7.0 0.0038 18.1 0.2 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_13 PF13370.6 gi|530549256|ref|YP_008429806.1| - 4.9e-06 27.0 5.6 0.0093 16.5 0.2 2.2 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_10 PF13237.6 gi|530549256|ref|YP_008429806.1| - 2e-05 24.6 9.4 0.00024 21.2 9.9 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|530549256|ref|YP_008429806.1| - 2e-05 24.9 3.9 0.053 14.0 0.3 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|530549256|ref|YP_008429806.1| - 5.3e-05 23.7 9.6 0.0099 16.4 11.1 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain ETF_QO PF05187.13 gi|530549256|ref|YP_008429806.1| - 6.4e-05 23.0 1.6 7.5e-05 22.8 1.6 1.2 1 1 0 1 1 1 1 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_22 PF17179.4 gi|530549256|ref|YP_008429806.1| - 0.00011 23.0 3.7 0.024 15.5 0.4 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|530549256|ref|YP_008429806.1| - 0.00022 21.5 10.3 0.039 14.5 2.2 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.6 gi|530549256|ref|YP_008429806.1| - 0.00057 20.6 6.7 0.004 17.8 0.4 2.2 2 0 0 2 2 2 1 4Fe-4S single cluster domain DUF3343 PF11823.8 gi|530549256|ref|YP_008429806.1| - 0.016 14.6 0.1 0.022 14.2 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3343) Fer4_3 PF12798.7 gi|530549256|ref|YP_008429806.1| - 0.029 15.3 15.3 0.19 12.8 4.4 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|530549256|ref|YP_008429806.1| - 0.51 10.6 9.4 1.5 9.0 1.0 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain POR_N PF01855.19 gi|530549257|ref|YP_008429807.1| - 6.1e-77 258.5 0.0 7.7e-77 258.1 0.0 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 gi|530549257|ref|YP_008429807.1| - 5.1e-17 62.1 0.1 8.3e-17 61.4 0.1 1.3 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|530549257|ref|YP_008429807.1| - 2.8e-06 27.2 0.0 6e-06 26.1 0.0 1.5 1 0 0 1 1 1 1 Transketolase, C-terminal domain TPP_enzyme_N PF02776.18 gi|530549257|ref|YP_008429807.1| - 0.078 12.6 0.0 0.16 11.6 0.0 1.6 2 0 0 2 2 2 0 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.21 gi|530549258|ref|YP_008429808.1| - 4.1e-39 133.8 0.2 5.8e-39 133.3 0.2 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR PF01558.18 gi|530549259|ref|YP_008429809.1| - 1.8e-36 125.9 0.6 2.8e-36 125.2 0.6 1.3 1 1 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase POR_N PF01855.19 gi|530549260|ref|YP_008429810.1| - 7.3e-82 274.6 0.2 9.3e-82 274.2 0.2 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 gi|530549260|ref|YP_008429810.1| - 6.6e-21 74.5 0.1 1.1e-19 70.6 0.1 2.2 2 0 0 2 2 2 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|530549260|ref|YP_008429810.1| - 1.4e-10 41.1 0.0 2.9e-10 40.1 0.0 1.5 1 0 0 1 1 1 1 Transketolase, C-terminal domain TPP_enzyme_N PF02776.18 gi|530549260|ref|YP_008429810.1| - 1.3e-06 28.2 0.4 2e-06 27.6 0.4 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.21 gi|530549261|ref|YP_008429811.1| - 6.6e-38 129.9 0.1 1.1e-37 129.2 0.1 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain XFP_N PF09364.10 gi|530549261|ref|YP_008429811.1| - 0.034 13.0 0.1 0.054 12.3 0.1 1.2 1 0 0 1 1 1 0 XFP N-terminal domain POR PF01558.18 gi|530549262|ref|YP_008429812.1| - 1.7e-36 126.0 0.1 2e-36 125.7 0.1 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Pyr_redox_2 PF07992.14 gi|530549263|ref|YP_008429813.1| - 1.4e-39 136.1 1.2 2.3e-39 135.4 1.2 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Fer4_20 PF14691.6 gi|530549263|ref|YP_008429813.1| - 1.6e-38 131.0 0.3 2.5e-38 130.3 0.3 1.3 1 0 0 1 1 1 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Pyr_redox PF00070.27 gi|530549263|ref|YP_008429813.1| - 4.8e-14 52.7 4.2 4.4e-06 27.2 0.2 3.6 3 1 0 3 3 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|530549263|ref|YP_008429813.1| - 1.4e-12 47.5 2.2 1.3e-07 31.2 0.1 3.1 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|530549263|ref|YP_008429813.1| - 3.5e-09 36.7 0.5 2.4e-08 34.1 0.0 2.3 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain AlaDh_PNT_C PF01262.21 gi|530549263|ref|YP_008429813.1| - 1.7e-07 30.8 0.1 0.0092 15.3 0.0 2.4 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain GIDA PF01134.22 gi|530549263|ref|YP_008429813.1| - 1.4e-06 27.7 0.7 0.0016 17.6 0.1 2.4 2 0 0 2 2 2 2 Glucose inhibited division protein A Thi4 PF01946.17 gi|530549263|ref|YP_008429813.1| - 2.3e-06 27.1 1.3 5.5e-06 25.8 0.1 2.0 2 0 0 2 2 2 1 Thi4 family HI0933_like PF03486.14 gi|530549263|ref|YP_008429813.1| - 2.4e-06 26.5 4.2 2.6e-05 23.1 0.6 2.4 2 0 0 2 2 2 1 HI0933-like protein FAD_oxidored PF12831.7 gi|530549263|ref|YP_008429813.1| - 4.1e-06 26.4 2.3 0.0018 17.7 0.0 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|530549263|ref|YP_008429813.1| - 4.7e-05 22.6 5.0 8.3e-05 21.8 0.3 2.6 3 0 0 3 3 3 1 FAD binding domain FAD_binding_3 PF01494.19 gi|530549263|ref|YP_008429813.1| - 0.00012 21.5 1.1 0.00018 20.9 0.1 1.7 2 0 0 2 2 2 1 FAD binding domain DAO PF01266.24 gi|530549263|ref|YP_008429813.1| - 0.00012 21.8 1.8 0.0032 17.1 0.2 3.1 3 1 0 4 4 4 1 FAD dependent oxidoreductase NAD_binding_7 PF13241.6 gi|530549263|ref|YP_008429813.1| - 0.00031 21.1 0.7 0.32 11.5 0.1 2.8 2 1 0 2 2 2 2 Putative NAD(P)-binding Shikimate_DH PF01488.20 gi|530549263|ref|YP_008429813.1| - 0.00075 19.6 2.0 2.4 8.2 0.1 3.9 4 0 0 4 4 4 1 Shikimate / quinate 5-dehydrogenase Amino_oxidase PF01593.24 gi|530549263|ref|YP_008429813.1| - 0.00081 18.8 0.1 0.0082 15.5 0.0 2.2 2 0 0 2 2 2 1 Flavin containing amine oxidoreductase 2-Hacid_dh_C PF02826.19 gi|530549263|ref|YP_008429813.1| - 0.0021 17.5 0.3 0.92 8.8 0.0 2.9 3 0 0 3 3 3 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain XdhC_C PF13478.6 gi|530549263|ref|YP_008429813.1| - 0.0022 18.5 0.0 1.8 9.0 0.0 2.5 2 0 0 2 2 2 1 XdhC Rossmann domain FMO-like PF00743.19 gi|530549263|ref|YP_008429813.1| - 0.0046 15.4 0.0 0.026 13.0 0.0 1.9 2 0 0 2 2 2 1 Flavin-binding monooxygenase-like PALP PF00291.25 gi|530549263|ref|YP_008429813.1| - 0.0082 15.6 0.0 4.9 6.5 0.0 2.4 2 1 0 2 2 2 2 Pyridoxal-phosphate dependent enzyme F420_oxidored PF03807.17 gi|530549263|ref|YP_008429813.1| - 0.011 16.3 2.7 0.45 11.1 0.4 3.5 3 1 0 3 3 2 0 NADP oxidoreductase coenzyme F420-dependent 3HCDH_N PF02737.18 gi|530549263|ref|YP_008429813.1| - 0.016 15.1 0.4 0.49 10.3 0.0 2.3 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Lycopene_cycl PF05834.12 gi|530549263|ref|YP_008429813.1| - 0.02 13.9 0.1 0.04 13.0 0.1 1.4 1 0 0 1 1 1 0 Lycopene cyclase protein NAD_binding_9 PF13454.6 gi|530549263|ref|YP_008429813.1| - 0.053 13.5 0.4 0.54 10.2 0.2 2.5 2 1 1 3 3 3 0 FAD-NAD(P)-binding AdoHcyase_NAD PF00670.21 gi|530549263|ref|YP_008429813.1| - 0.075 13.1 0.4 10 6.1 0.1 2.7 2 0 0 2 2 2 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain IlvN PF07991.12 gi|530549263|ref|YP_008429813.1| - 0.13 11.8 0.2 12 5.5 0.0 2.5 2 0 0 2 2 2 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain Fer4_10 PF13237.6 gi|530549263|ref|YP_008429813.1| - 2 8.6 7.1 4.7 7.4 7.1 1.7 1 1 0 1 1 1 0 4Fe-4S dicluster domain DHODB_Fe-S_bind PF10418.9 gi|530549264|ref|YP_008429814.1| - 2.2e-11 43.3 0.6 3.8e-11 42.6 0.6 1.4 1 0 0 1 1 1 1 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B Glycos_transf_3 PF00591.21 gi|530549264|ref|YP_008429814.1| - 0.085 12.4 0.0 11 5.5 0.0 2.3 2 0 0 2 2 2 0 Glycosyl transferase family, a/b domain Peripla_BP_6 PF13458.6 gi|530549264|ref|YP_008429814.1| - 0.1 12.3 0.0 0.21 11.2 0.0 1.5 2 0 0 2 2 2 0 Periplasmic binding protein Fer2_3 PF13085.6 gi|530549264|ref|YP_008429814.1| - 0.11 12.5 0.1 0.35 10.9 0.1 1.8 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain ETF PF01012.21 gi|530549264|ref|YP_008429814.1| - 0.12 12.2 0.1 0.3 10.9 0.1 1.7 1 1 1 2 2 2 0 Electron transfer flavoprotein domain DUF192 PF02643.15 gi|530549265|ref|YP_008429815.1| - 1.2e-17 63.8 0.0 1.5e-17 63.5 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized ACR, COG1430 Met_10 PF02475.16 gi|530549266|ref|YP_008429816.1| - 4.4e-72 242.0 0.5 6.5e-72 241.5 0.5 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Trm5_N PF18093.1 gi|530549266|ref|YP_008429816.1| - 2.7e-19 68.8 0.5 7.9e-19 67.3 0.5 1.8 1 0 0 1 1 1 1 tRNA methyltransferase 5 N-terminal domain PrmA PF06325.13 gi|530549266|ref|YP_008429816.1| - 6.5e-07 29.0 0.0 1.5e-06 27.8 0.0 1.6 2 0 0 2 2 2 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltr_RsmB-F PF01189.17 gi|530549266|ref|YP_008429816.1| - 9.7e-06 25.4 0.0 0.00034 20.3 0.0 2.3 1 1 1 2 2 2 2 16S rRNA methyltransferase RsmB/F MTS PF05175.14 gi|530549266|ref|YP_008429816.1| - 1.1e-05 25.1 0.0 2.2e-05 24.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase small domain TRM PF02005.16 gi|530549266|ref|YP_008429816.1| - 3.1e-05 23.3 0.0 4.7e-05 22.7 0.0 1.3 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Methyltransf_15 PF09445.10 gi|530549266|ref|YP_008429816.1| - 4e-05 23.2 0.0 5.8e-05 22.7 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_25 PF13649.6 gi|530549266|ref|YP_008429816.1| - 7.1e-05 23.4 0.0 0.0016 19.1 0.0 2.4 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|530549266|ref|YP_008429816.1| - 0.00043 20.1 0.0 0.0093 15.8 0.0 2.2 2 0 0 2 2 2 1 Methyltransferase domain DNA_methylase PF00145.17 gi|530549266|ref|YP_008429816.1| - 0.00054 19.4 0.0 0.00085 18.8 0.0 1.3 1 0 0 1 1 1 1 C-5 cytosine-specific DNA methylase tRNA_U5-meth_tr PF05958.11 gi|530549266|ref|YP_008429816.1| - 0.015 14.3 0.1 0.089 11.8 0.0 2.0 1 1 1 2 2 2 0 tRNA (Uracil-5-)-methyltransferase Cons_hypoth95 PF03602.15 gi|530549266|ref|YP_008429816.1| - 0.025 14.2 0.0 0.046 13.4 0.0 1.5 1 0 0 1 1 1 0 Conserved hypothetical protein 95 Methyltransf_11 PF08241.12 gi|530549266|ref|YP_008429816.1| - 0.033 14.8 0.0 0.79 10.4 0.0 2.7 2 1 0 2 2 2 0 Methyltransferase domain Methyltransf_18 PF12847.7 gi|530549266|ref|YP_008429816.1| - 0.042 13.8 0.1 0.44 10.5 0.0 2.5 3 0 0 3 3 3 0 Methyltransferase domain PRMT5 PF05185.16 gi|530549266|ref|YP_008429816.1| - 0.11 12.3 0.2 0.78 9.6 0.0 2.1 2 0 0 2 2 2 0 PRMT5 arginine-N-methyltransferase FecCD PF01032.18 gi|530549267|ref|YP_008429817.1| - 5.6e-90 301.5 27.6 6.8e-90 301.2 27.6 1.0 1 0 0 1 1 1 1 FecCD transport family TMEM37 PF15108.6 gi|530549267|ref|YP_008429817.1| - 0.77 9.6 8.5 2.7 7.8 8.5 2.1 1 1 0 1 1 1 0 Voltage-dependent calcium channel gamma-like subunit protein family Phage_holin_3_1 PF05106.12 gi|530549267|ref|YP_008429817.1| - 2.3 8.7 7.4 10 6.6 1.2 2.7 2 1 0 2 2 2 0 Phage holin family (Lysis protein S) ABC_tran PF00005.27 gi|530549268|ref|YP_008429818.1| - 9.2e-31 107.2 0.0 1.9e-30 106.2 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|530549268|ref|YP_008429818.1| - 5.4e-09 36.3 1.6 2.5e-05 24.3 0.1 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|530549268|ref|YP_008429818.1| - 1.4e-07 31.2 0.1 0.013 15.0 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|530549268|ref|YP_008429818.1| - 5.5e-06 27.0 0.0 9.5e-06 26.3 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|530549268|ref|YP_008429818.1| - 1.2e-05 25.0 0.1 2.9e-05 23.7 0.0 1.7 2 0 0 2 2 2 1 P-loop containing region of AAA domain ABC_ATPase PF09818.9 gi|530549268|ref|YP_008429818.1| - 0.00015 20.7 0.8 0.37 9.5 0.0 2.7 2 1 1 3 3 3 2 Predicted ATPase of the ABC class Rad17 PF03215.15 gi|530549268|ref|YP_008429818.1| - 0.00019 21.4 0.0 0.00037 20.5 0.0 1.5 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_27 PF13514.6 gi|530549268|ref|YP_008429818.1| - 0.00091 18.9 0.0 0.0023 17.5 0.0 1.6 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.6 gi|530549268|ref|YP_008429818.1| - 0.0013 18.9 0.0 0.0028 17.8 0.0 1.8 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|530549268|ref|YP_008429818.1| - 0.0015 18.5 0.2 0.0031 17.4 0.0 1.6 2 0 0 2 2 2 1 RsgA GTPase AAA_16 PF13191.6 gi|530549268|ref|YP_008429818.1| - 0.0016 18.9 0.1 0.0025 18.2 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_15 PF13175.6 gi|530549268|ref|YP_008429818.1| - 0.0019 18.0 0.0 0.0067 16.2 0.0 1.7 1 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|530549268|ref|YP_008429818.1| - 0.002 18.4 0.1 0.0045 17.3 0.1 1.6 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|530549268|ref|YP_008429818.1| - 0.0028 17.4 0.0 0.0063 16.2 0.0 1.7 1 1 0 1 1 1 1 AAA domain NTPase_1 PF03266.15 gi|530549268|ref|YP_008429818.1| - 0.0051 16.7 0.9 0.38 10.6 0.0 2.5 2 1 0 2 2 2 1 NTPase Mg_chelatase PF01078.21 gi|530549268|ref|YP_008429818.1| - 0.014 14.7 0.0 0.02 14.3 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA PF00004.29 gi|530549268|ref|YP_008429818.1| - 0.015 15.7 0.0 0.033 14.6 0.0 1.8 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) SbcCD_C PF13558.6 gi|530549268|ref|YP_008429818.1| - 0.045 14.0 0.1 0.58 10.4 0.1 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit MMR_HSR1 PF01926.23 gi|530549268|ref|YP_008429818.1| - 0.057 13.5 0.7 0.12 12.5 0.1 1.8 2 0 0 2 2 2 0 50S ribosome-binding GTPase MobB PF03205.14 gi|530549268|ref|YP_008429818.1| - 0.088 12.7 0.0 0.19 11.6 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B NACHT PF05729.12 gi|530549268|ref|YP_008429818.1| - 0.093 12.6 0.0 0.18 11.7 0.0 1.5 1 0 0 1 1 1 0 NACHT domain Zeta_toxin PF06414.12 gi|530549268|ref|YP_008429818.1| - 0.13 11.5 0.0 0.19 11.0 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin AAA_25 PF13481.6 gi|530549268|ref|YP_008429818.1| - 0.13 11.8 0.4 0.37 10.3 0.0 1.8 2 0 0 2 2 2 0 AAA domain NTPase_1 PF03266.15 gi|530549269|ref|YP_008429819.1| - 1.1e-55 188.0 0.4 1.3e-55 187.9 0.4 1.0 1 0 0 1 1 1 1 NTPase DUF2478 PF10649.9 gi|530549269|ref|YP_008429819.1| - 2e-08 34.0 0.0 5.4e-08 32.6 0.0 1.6 1 1 0 1 1 1 1 Protein of unknown function (DUF2478) AAA PF00004.29 gi|530549269|ref|YP_008429819.1| - 6.1e-07 29.9 0.0 1.1e-06 29.0 0.0 1.4 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|530549269|ref|YP_008429819.1| - 1.2e-06 28.8 0.0 3.3e-06 27.4 0.0 1.6 1 1 1 2 2 2 1 AAA domain AAA_18 PF13238.6 gi|530549269|ref|YP_008429819.1| - 3.9e-06 27.4 0.2 8.4e-06 26.4 0.2 1.8 1 1 0 1 1 1 1 AAA domain RuvB_N PF05496.12 gi|530549269|ref|YP_008429819.1| - 5.6e-05 22.9 1.0 0.034 13.9 0.1 2.2 2 0 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_17 PF13207.6 gi|530549269|ref|YP_008429819.1| - 6.9e-05 23.3 0.7 0.00014 22.3 0.6 1.8 1 1 0 1 1 1 1 AAA domain AAA_24 PF13479.6 gi|530549269|ref|YP_008429819.1| - 0.0004 20.2 0.4 0.00077 19.2 0.4 1.5 1 1 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 gi|530549269|ref|YP_008429819.1| - 0.0016 18.2 0.1 1.8 8.3 0.0 2.2 2 0 0 2 2 2 2 IstB-like ATP binding protein APS_kinase PF01583.20 gi|530549269|ref|YP_008429819.1| - 0.0017 18.3 0.0 0.0037 17.2 0.0 1.6 1 0 0 1 1 1 1 Adenylylsulphate kinase AAA_30 PF13604.6 gi|530549269|ref|YP_008429819.1| - 0.0019 18.0 1.0 0.0074 16.0 1.0 1.8 1 1 0 1 1 1 1 AAA domain NACHT PF05729.12 gi|530549269|ref|YP_008429819.1| - 0.0025 17.8 0.1 0.033 14.1 0.2 2.0 2 0 0 2 2 2 1 NACHT domain ADK PF00406.22 gi|530549269|ref|YP_008429819.1| - 0.0027 17.8 0.1 0.011 15.8 0.1 1.9 1 1 1 2 2 2 1 Adenylate kinase AAA_14 PF13173.6 gi|530549269|ref|YP_008429819.1| - 0.0047 17.0 0.8 0.43 10.6 0.2 2.3 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|530549269|ref|YP_008429819.1| - 0.0057 17.1 0.3 0.017 15.5 0.3 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_33 PF13671.6 gi|530549269|ref|YP_008429819.1| - 0.0062 16.7 0.1 0.0064 16.7 0.1 1.4 1 1 0 1 1 1 1 AAA domain SRP54 PF00448.22 gi|530549269|ref|YP_008429819.1| - 0.011 15.4 0.9 0.36 10.4 0.3 2.1 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain MeaB PF03308.16 gi|530549269|ref|YP_008429819.1| - 0.013 14.5 0.5 0.033 13.2 0.1 1.9 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB NB-ARC PF00931.22 gi|530549269|ref|YP_008429819.1| - 0.013 14.7 0.1 0.021 14.0 0.1 1.3 1 0 0 1 1 1 0 NB-ARC domain MobB PF03205.14 gi|530549269|ref|YP_008429819.1| - 0.014 15.3 0.9 0.037 13.9 0.2 1.9 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B MMR_HSR1 PF01926.23 gi|530549269|ref|YP_008429819.1| - 0.014 15.4 0.4 0.035 14.2 0.4 1.8 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_25 PF13481.6 gi|530549269|ref|YP_008429819.1| - 0.017 14.7 2.7 0.99 8.9 0.2 2.3 2 1 0 2 2 2 0 AAA domain AAA_28 PF13521.6 gi|530549269|ref|YP_008429819.1| - 0.028 14.7 0.5 0.068 13.4 0.5 1.8 1 1 0 1 1 1 0 AAA domain cobW PF02492.19 gi|530549269|ref|YP_008429819.1| - 0.029 14.0 1.0 0.24 11.0 0.2 2.1 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain KdpD PF02702.17 gi|530549269|ref|YP_008429819.1| - 0.038 13.5 0.4 0.077 12.5 0.4 1.7 1 1 0 1 1 1 0 Osmosensitive K+ channel His kinase sensor domain DnaB_C PF03796.15 gi|530549269|ref|YP_008429819.1| - 0.038 13.3 0.0 0.74 9.1 0.0 2.1 2 0 0 2 2 2 0 DnaB-like helicase C terminal domain KTI12 PF08433.10 gi|530549269|ref|YP_008429819.1| - 0.048 13.1 0.4 0.12 11.8 0.0 1.8 2 1 0 2 2 2 0 Chromatin associated protein KTI12 ATPase PF06745.13 gi|530549269|ref|YP_008429819.1| - 0.058 12.7 1.7 0.35 10.2 1.7 2.0 1 1 0 1 1 1 0 KaiC ATPase_2 PF01637.18 gi|530549269|ref|YP_008429819.1| - 0.059 13.3 0.9 0.11 12.4 0.9 1.9 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea DUF2075 PF09848.9 gi|530549269|ref|YP_008429819.1| - 0.062 12.5 0.5 0.093 12.0 0.2 1.4 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) AAA_5 PF07728.14 gi|530549269|ref|YP_008429819.1| - 0.07 13.1 0.6 0.53 10.3 0.1 2.2 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) 6PF2K PF01591.18 gi|530549269|ref|YP_008429819.1| - 0.082 12.2 0.5 0.35 10.1 0.1 2.0 2 0 0 2 2 2 0 6-phosphofructo-2-kinase Viral_helicase1 PF01443.18 gi|530549269|ref|YP_008429819.1| - 0.23 11.2 0.2 1.1 8.9 0.1 1.9 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase AAA_19 PF13245.6 gi|530549269|ref|YP_008429819.1| - 0.29 11.5 2.1 3.5 8.0 2.0 2.3 1 1 0 1 1 1 0 AAA domain T2SSE PF00437.20 gi|530549269|ref|YP_008429819.1| - 0.37 9.8 1.4 8.9 5.3 0.5 2.3 2 1 0 2 2 2 0 Type II/IV secretion system protein CW_binding_2 PF04122.12 gi|530549270|ref|YP_008429820.1| - 3.9e-06 27.4 2.0 0.0032 18.1 0.0 2.8 3 0 0 3 3 3 2 Putative cell wall binding repeat 2 DUF1771 PF08590.10 gi|530549270|ref|YP_008429820.1| - 0.00016 22.0 10.0 0.066 13.6 0.3 2.6 2 0 0 2 2 2 2 Domain of unknown function (DUF1771) Tuberin PF03542.16 gi|530549270|ref|YP_008429820.1| - 0.065 12.3 0.4 0.51 9.4 0.0 2.2 2 1 0 2 2 2 0 Tuberin DUF3533 PF12051.8 gi|530549270|ref|YP_008429820.1| - 0.57 9.0 2.9 1.1 8.2 2.9 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3533) PTS_IIA PF02255.16 gi|530549270|ref|YP_008429820.1| - 2.3 8.3 9.5 4.5 7.4 2.4 2.7 2 1 0 2 2 2 0 PTS system, Lactose/Cellobiose specific IIA subunit DUF4363 PF14276.6 gi|530549270|ref|YP_008429820.1| - 4.6 7.4 15.8 1.7 8.8 2.6 3.5 3 0 0 3 3 3 0 Domain of unknown function (DUF4363) IF-2B PF01008.17 gi|530549271|ref|YP_008429821.1| - 5.3e-83 278.5 0.0 6.3e-83 278.2 0.0 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family Fe-ADH PF00465.19 gi|530549272|ref|YP_008429822.1| - 2.3e-95 319.5 0.0 2.6e-95 319.3 0.0 1.0 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH_2 PF13685.6 gi|530549272|ref|YP_008429822.1| - 1.3e-15 57.8 0.0 1.4e-08 34.8 0.0 2.2 2 0 0 2 2 2 2 Iron-containing alcohol dehydrogenase B12-binding PF02310.19 gi|530549272|ref|YP_008429822.1| - 0.099 12.7 0.0 0.54 10.3 0.0 2.2 2 0 0 2 2 2 0 B12 binding domain TyeA PF09059.10 gi|530549272|ref|YP_008429822.1| - 0.14 12.3 0.0 6.5 6.9 0.0 3.0 3 0 0 3 3 3 0 TyeA DEAD PF00270.29 gi|530549273|ref|YP_008429823.1| - 1.1e-29 103.5 0.0 5.2e-28 98.0 0.0 2.3 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|530549273|ref|YP_008429823.1| - 1.2e-19 70.7 0.0 6e-19 68.4 0.1 2.3 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DEAD_assoc PF08494.11 gi|530549273|ref|YP_008429823.1| - 2.8e-19 69.7 0.2 4.1e-18 65.9 0.1 2.6 2 1 0 2 2 2 1 DEAD/H associated ResIII PF04851.15 gi|530549273|ref|YP_008429823.1| - 1.4e-06 28.5 0.0 3.4e-06 27.2 0.0 1.6 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit AAA_30 PF13604.6 gi|530549273|ref|YP_008429823.1| - 0.00058 19.6 0.0 0.0026 17.5 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.6 gi|530549273|ref|YP_008429823.1| - 0.0015 18.9 0.0 0.055 13.8 0.0 2.5 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.6 gi|530549273|ref|YP_008429823.1| - 0.0081 15.8 0.3 0.17 11.4 0.0 2.4 2 0 0 2 2 2 1 AAA domain zinc_ribbon_10 PF10058.9 gi|530549273|ref|YP_008429823.1| - 0.027 14.2 0.2 0.066 13.0 0.2 1.7 1 0 0 1 1 1 0 Predicted integral membrane zinc-ribbon metal-binding protein UvrD-helicase PF00580.21 gi|530549273|ref|YP_008429823.1| - 0.06 12.9 0.0 0.18 11.3 0.0 1.8 1 1 1 2 2 2 0 UvrD/REP helicase N-terminal domain HypA PF01155.19 gi|530549273|ref|YP_008429823.1| - 0.16 12.0 0.0 0.42 10.7 0.0 1.7 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Peptidase_M20 PF01546.28 gi|530549274|ref|YP_008429824.1| - 8.2e-25 87.7 0.1 1.1e-24 87.3 0.1 1.2 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|530549274|ref|YP_008429824.1| - 9.9e-10 38.3 0.0 1.4e-08 34.7 0.0 2.3 1 1 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M42 PF05343.14 gi|530549274|ref|YP_008429824.1| - 1.2e-07 31.1 0.1 0.0012 17.9 0.1 2.1 2 0 0 2 2 2 2 M42 glutamyl aminopeptidase Peptidase_M28 PF04389.17 gi|530549274|ref|YP_008429824.1| - 5.1e-07 29.6 0.0 1.4e-05 24.9 0.0 2.0 2 0 0 2 2 2 1 Peptidase family M28 Amidohydro_1 PF01979.20 gi|530549275|ref|YP_008429825.1| - 3.3e-18 66.1 0.1 4.8e-18 65.6 0.1 1.4 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|530549275|ref|YP_008429825.1| - 2.7e-15 56.8 0.0 3.3e-15 56.5 0.0 1.3 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|530549276|ref|YP_008429826.1| - 3.4e-05 23.5 0.0 4.5e-05 23.1 0.0 1.2 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_1 PF01979.20 gi|530549276|ref|YP_008429826.1| - 0.024 14.0 0.6 0.038 13.3 0.1 1.6 2 0 0 2 2 2 0 Amidohydrolase family BPD_transp_1 PF00528.22 gi|530549277|ref|YP_008429827.1| - 7.8e-33 113.8 12.9 1.3e-32 113.0 12.9 1.4 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|530549277|ref|YP_008429827.1| - 0.0027 17.6 1.4 0.0027 17.6 1.4 3.1 2 1 0 2 2 2 1 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.22 gi|530549278|ref|YP_008429828.1| - 4.9e-42 143.7 16.3 4.9e-42 143.7 16.3 2.3 3 0 0 3 3 3 2 Binding-protein-dependent transport system inner membrane component PetG PF02529.15 gi|530549278|ref|YP_008429828.1| - 1.7 8.5 0.0 1.7 8.5 0.0 3.9 4 0 0 4 4 4 0 Cytochrome B6-F complex subunit 5 SBP_bac_5 PF00496.22 gi|530549279|ref|YP_008429829.1| - 2.2e-63 214.5 0.0 2.8e-63 214.1 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle SBP_bac_3 PF00497.20 gi|530549279|ref|YP_008429829.1| - 0.012 15.1 0.0 0.068 12.6 0.0 2.0 2 0 0 2 2 2 0 Bacterial extracellular solute-binding proteins, family 3 NERD PF08378.11 gi|530549279|ref|YP_008429829.1| - 0.089 13.3 0.1 0.34 11.4 0.1 1.9 2 0 0 2 2 2 0 Nuclease-related domain CAP18_C PF12153.8 gi|530549279|ref|YP_008429829.1| - 0.26 11.2 1.0 15 5.6 0.2 2.4 2 0 0 2 2 2 0 LPS binding domain of CAP18 (C terminal) SBP_bac_5 PF00496.22 gi|530549280|ref|YP_008429830.1| - 1.8e-19 70.0 1.6 2.2e-19 69.7 1.6 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle DUF5003 PF16394.5 gi|530549280|ref|YP_008429830.1| - 0.0021 17.2 0.3 0.0025 17.0 0.3 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF5003) HTH_AsnC-type PF13404.6 gi|530549281|ref|YP_008429831.1| - 2.1e-11 43.5 0.4 3.3e-11 42.8 0.4 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|530549281|ref|YP_008429831.1| - 1.7e-10 40.3 0.4 3e-10 39.5 0.4 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding AsnC_trans_reg PF01037.21 gi|530549281|ref|YP_008429831.1| - 2.3e-06 27.4 0.0 3.1e-06 27.1 0.0 1.2 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_23 PF13384.6 gi|530549281|ref|YP_008429831.1| - 0.00039 20.1 0.4 0.00081 19.1 0.4 1.5 1 0 0 1 1 1 1 Homeodomain-like domain Sigma70_r4 PF04545.16 gi|530549281|ref|YP_008429831.1| - 0.0042 16.6 0.1 0.0071 15.8 0.1 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 MarR PF01047.22 gi|530549281|ref|YP_008429831.1| - 0.025 14.5 0.0 0.042 13.8 0.0 1.4 1 0 0 1 1 1 0 MarR family CENP-B_N PF04218.13 gi|530549281|ref|YP_008429831.1| - 0.029 14.0 0.0 0.07 12.8 0.0 1.6 1 0 0 1 1 1 0 CENP-B N-terminal DNA-binding domain HTH_IclR PF09339.10 gi|530549281|ref|YP_008429831.1| - 0.032 14.0 0.0 0.047 13.5 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|530549281|ref|YP_008429831.1| - 0.083 12.8 0.0 0.14 12.1 0.0 1.3 1 0 0 1 1 1 0 MarR family LexA_DNA_bind PF01726.16 gi|530549281|ref|YP_008429831.1| - 0.13 12.0 0.1 0.27 11.0 0.1 1.5 1 1 0 1 1 1 0 LexA DNA binding domain GerE PF00196.19 gi|530549281|ref|YP_008429831.1| - 0.18 11.4 0.2 0.33 10.5 0.2 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family HTH_31 PF13560.6 gi|530549281|ref|YP_008429831.1| - 0.19 12.1 0.2 0.29 11.5 0.2 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain Asp_Glu_race PF01177.22 gi|530549282|ref|YP_008429832.1| - 3.4e-13 50.0 0.2 6.6e-13 49.0 0.2 1.4 1 1 0 1 1 1 1 Asp/Glu/Hydantoin racemase AroM PF07302.11 gi|530549282|ref|YP_008429832.1| - 5e-06 26.1 0.0 8.8e-06 25.3 0.0 1.3 1 1 0 1 1 1 1 AroM protein Pantoate_transf PF02548.15 gi|530549282|ref|YP_008429832.1| - 1.1e-05 25.0 1.9 0.0004 19.9 0.1 2.1 2 0 0 2 2 2 2 Ketopantoate hydroxymethyltransferase HAD PF12710.7 gi|530549282|ref|YP_008429832.1| - 7.7e-05 23.2 0.2 0.4 11.0 0.0 2.1 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase Amdase PF17645.1 gi|530549282|ref|YP_008429832.1| - 0.0029 17.3 0.3 0.14 11.8 0.1 2.1 2 0 0 2 2 2 1 Arylmalonate decarboxylase Radical_SAM PF04055.21 gi|530549282|ref|YP_008429832.1| - 0.024 15.0 0.1 0.05 14.0 0.1 1.5 1 1 0 1 1 1 0 Radical SAM superfamily Redoxin PF08534.10 gi|530549282|ref|YP_008429832.1| - 0.066 12.9 0.0 0.26 11.0 0.0 1.9 2 0 0 2 2 2 0 Redoxin Peripla_BP_1 PF00532.21 gi|530549282|ref|YP_008429832.1| - 0.085 12.3 0.2 0.82 9.0 0.0 2.0 1 1 1 2 2 2 0 Periplasmic binding proteins and sugar binding domain of LacI family DUF917 PF06032.12 gi|530549283|ref|YP_008429833.1| - 5.3e-58 196.5 3.8 6.6e-58 196.2 3.8 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF917) Cecropin PF00272.19 gi|530549283|ref|YP_008429833.1| - 0.017 14.8 0.9 0.079 12.7 0.9 2.2 1 0 0 1 1 1 0 Cecropin family DUF1177 PF06675.11 gi|530549284|ref|YP_008429834.1| - 2.5e-144 479.1 0.9 3e-144 478.8 0.9 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1177) AroM PF07302.11 gi|530549285|ref|YP_008429835.1| - 2e-80 269.3 0.1 2.2e-80 269.2 0.1 1.0 1 0 0 1 1 1 1 AroM protein ATP-cone PF03477.16 gi|530549285|ref|YP_008429835.1| - 0.0075 16.8 0.4 0.058 14.0 0.0 2.5 3 0 0 3 3 3 1 ATP cone domain Cas_Csn2 PF09711.10 gi|530549285|ref|YP_008429835.1| - 0.042 13.5 0.5 5.3 6.6 0.1 2.4 2 0 0 2 2 2 0 CRISPR-associated protein (Cas_Csn2) FtsQ PF03799.15 gi|530549285|ref|YP_008429835.1| - 0.15 12.9 0.0 0.33 11.8 0.0 1.5 1 0 0 1 1 1 0 Cell division protein FtsQ Peptidase_M29 PF02073.15 gi|530549286|ref|YP_008429836.1| - 2.6e-15 56.1 0.0 9.1e-13 47.7 0.0 2.1 1 1 0 2 2 2 2 Thermophilic metalloprotease (M29) M20_dimer PF07687.14 gi|530549287|ref|YP_008429837.1| - 4.8e-09 36.1 0.0 1.1e-08 35.0 0.0 1.5 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M20 PF01546.28 gi|530549287|ref|YP_008429837.1| - 6.1e-05 22.8 0.0 7.3e-05 22.6 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 FeoB_associated PF12669.7 gi|530549288|ref|YP_008429838.1| - 0.00069 20.0 1.6 0.12 12.7 0.0 2.1 2 0 0 2 2 2 2 FeoB-associated Cys-rich membrane protein DUF3784 PF12650.7 gi|530549288|ref|YP_008429838.1| - 0.0066 16.6 0.2 0.0085 16.3 0.2 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF3784) Syndecan PF01034.20 gi|530549288|ref|YP_008429838.1| - 0.0072 16.2 1.4 0.97 9.4 0.6 2.1 2 0 0 2 2 2 2 Syndecan domain Chordopox_A13L PF05961.11 gi|530549288|ref|YP_008429838.1| - 0.052 13.8 0.1 2.4 8.5 0.1 2.0 2 0 0 2 2 2 0 Chordopoxvirus A13L protein NVEALA PF14055.6 gi|530549288|ref|YP_008429838.1| - 0.11 12.5 0.7 2.6 8.1 0.5 2.0 2 0 0 2 2 2 0 NVEALA protein ABC_tran PF00005.27 gi|530549289|ref|YP_008429839.1| - 5e-57 192.2 0.0 1.5e-29 103.3 0.0 2.4 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 gi|530549289|ref|YP_008429839.1| - 3.6e-25 89.4 3.9 6.9e-10 39.2 0.0 4.2 2 2 1 4 4 4 4 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|530549289|ref|YP_008429839.1| - 3e-13 49.7 6.2 2.6e-06 27.0 0.0 4.1 3 1 0 3 3 3 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|530549289|ref|YP_008429839.1| - 4e-09 36.1 0.1 0.0024 17.6 0.0 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|530549289|ref|YP_008429839.1| - 1.1e-08 35.6 0.0 0.0051 17.2 0.0 2.5 2 1 0 2 2 2 2 AAA ATPase domain NTPase_1 PF03266.15 gi|530549289|ref|YP_008429839.1| - 1e-06 28.8 0.5 0.034 14.1 0.1 2.9 2 0 0 2 2 2 2 NTPase ATPase PF06745.13 gi|530549289|ref|YP_008429839.1| - 1.7e-06 27.5 1.2 0.071 12.5 0.0 3.1 3 0 0 3 3 3 2 KaiC AAA_30 PF13604.6 gi|530549289|ref|YP_008429839.1| - 2e-06 27.6 0.0 0.022 14.5 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_24 PF13479.6 gi|530549289|ref|YP_008429839.1| - 8.6e-06 25.6 1.6 0.072 12.8 0.1 3.2 3 0 0 3 3 3 2 AAA domain AAA_13 PF13166.6 gi|530549289|ref|YP_008429839.1| - 8.7e-06 24.7 0.4 0.71 8.4 0.0 3.9 4 0 0 4 4 4 2 AAA domain AAA_22 PF13401.6 gi|530549289|ref|YP_008429839.1| - 1.8e-05 25.0 3.9 0.085 13.1 0.4 3.7 2 2 1 3 3 2 2 AAA domain RsgA_GTPase PF03193.16 gi|530549289|ref|YP_008429839.1| - 2.5e-05 24.3 0.2 0.18 11.7 0.0 2.8 3 0 0 3 3 2 2 RsgA GTPase Mg_chelatase PF01078.21 gi|530549289|ref|YP_008429839.1| - 2.9e-05 23.5 0.0 0.072 12.5 0.0 2.3 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI NACHT PF05729.12 gi|530549289|ref|YP_008429839.1| - 5.2e-05 23.2 0.1 0.075 12.9 0.1 2.7 2 0 0 2 2 2 1 NACHT domain TniB PF05621.11 gi|530549289|ref|YP_008429839.1| - 0.0001 21.8 1.0 2.1 7.7 0.0 3.9 4 1 1 5 5 4 2 Bacterial TniB protein AAA_23 PF13476.6 gi|530549289|ref|YP_008429839.1| - 0.00012 22.7 7.9 0.072 13.6 0.3 3.0 2 1 1 3 3 3 2 AAA domain AAA_18 PF13238.6 gi|530549289|ref|YP_008429839.1| - 0.00019 22.0 0.8 0.074 13.6 0.2 3.2 3 0 0 3 3 2 1 AAA domain AAA_25 PF13481.6 gi|530549289|ref|YP_008429839.1| - 0.0003 20.4 0.2 0.14 11.7 0.0 2.7 3 0 0 3 3 2 1 AAA domain T2SSE PF00437.20 gi|530549289|ref|YP_008429839.1| - 0.0004 19.5 0.0 0.11 11.5 0.0 2.4 2 0 0 2 2 2 1 Type II/IV secretion system protein AAA_5 PF07728.14 gi|530549289|ref|YP_008429839.1| - 0.0006 19.8 0.3 0.87 9.6 0.1 3.3 3 0 0 3 3 2 1 AAA domain (dynein-related subfamily) ATPase_2 PF01637.18 gi|530549289|ref|YP_008429839.1| - 0.00063 19.7 3.2 0.44 10.4 0.5 3.5 2 1 0 2 2 2 1 ATPase domain predominantly from Archaea TsaE PF02367.17 gi|530549289|ref|YP_008429839.1| - 0.00064 19.7 0.1 1.1 9.3 0.0 2.4 2 0 0 2 2 2 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE PduV-EutP PF10662.9 gi|530549289|ref|YP_008429839.1| - 0.00078 19.2 0.1 0.56 9.9 0.0 2.5 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation AAA_7 PF12775.7 gi|530549289|ref|YP_008429839.1| - 0.0011 18.5 0.2 0.29 10.6 0.0 2.6 2 0 0 2 2 2 1 P-loop containing dynein motor region AAA_28 PF13521.6 gi|530549289|ref|YP_008429839.1| - 0.0012 19.1 0.8 0.41 10.9 0.1 2.6 2 0 0 2 2 2 1 AAA domain G-alpha PF00503.20 gi|530549289|ref|YP_008429839.1| - 0.0012 18.1 0.0 0.078 12.1 0.0 2.4 2 0 0 2 2 2 1 G-protein alpha subunit Zeta_toxin PF06414.12 gi|530549289|ref|YP_008429839.1| - 0.0012 18.1 0.1 0.45 9.8 0.1 2.4 2 0 0 2 2 2 1 Zeta toxin ATP_bind_1 PF03029.17 gi|530549289|ref|YP_008429839.1| - 0.0021 17.9 1.2 2.1 8.1 0.1 2.9 3 0 0 3 3 2 2 Conserved hypothetical ATP binding protein DLIC PF05783.11 gi|530549289|ref|YP_008429839.1| - 0.0024 16.8 0.2 0.37 9.6 0.0 2.3 2 0 0 2 2 2 1 Dynein light intermediate chain (DLIC) RNA_helicase PF00910.22 gi|530549289|ref|YP_008429839.1| - 0.0036 17.7 0.1 5.5 7.4 0.0 3.0 2 0 0 2 2 2 0 RNA helicase NB-ARC PF00931.22 gi|530549289|ref|YP_008429839.1| - 0.0042 16.3 0.5 0.9 8.7 0.0 2.8 3 0 0 3 3 3 1 NB-ARC domain IstB_IS21 PF01695.17 gi|530549289|ref|YP_008429839.1| - 0.0044 16.8 1.5 0.73 9.5 0.0 3.6 4 0 0 4 4 4 1 IstB-like ATP binding protein Roc PF08477.13 gi|530549289|ref|YP_008429839.1| - 0.0049 17.1 1.1 0.96 9.7 0.1 2.7 2 0 0 2 2 2 1 Ras of Complex, Roc, domain of DAPkinase AAA_14 PF13173.6 gi|530549289|ref|YP_008429839.1| - 0.0053 16.8 0.4 4.1 7.4 0.0 3.2 3 0 0 3 3 2 0 AAA domain cobW PF02492.19 gi|530549289|ref|YP_008429839.1| - 0.0056 16.3 3.6 1.5 8.4 0.1 3.0 3 0 0 3 3 3 2 CobW/HypB/UreG, nucleotide-binding domain SbcCD_C PF13558.6 gi|530549289|ref|YP_008429839.1| - 0.0065 16.7 0.0 2.5 8.4 0.0 3.2 2 1 0 2 2 2 1 Putative exonuclease SbcCD, C subunit AAA PF00004.29 gi|530549289|ref|YP_008429839.1| - 0.0085 16.5 3.1 1.8 9.0 0.1 3.3 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) ATP-synt_ab PF00006.25 gi|530549289|ref|YP_008429839.1| - 0.009 15.7 0.3 3.8 7.1 0.0 2.7 3 0 0 3 3 3 0 ATP synthase alpha/beta family, nucleotide-binding domain SRP54 PF00448.22 gi|530549289|ref|YP_008429839.1| - 0.0093 15.6 0.7 2 8.0 0.1 2.6 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain MeaB PF03308.16 gi|530549289|ref|YP_008429839.1| - 0.014 14.4 0.1 3.3 6.6 0.0 2.4 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB RuvB_N PF05496.12 gi|530549289|ref|YP_008429839.1| - 0.016 14.9 0.1 0.2 11.4 0.0 2.4 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain ResIII PF04851.15 gi|530549289|ref|YP_008429839.1| - 0.018 15.1 0.7 1.9 8.5 0.0 3.3 4 0 0 4 4 2 0 Type III restriction enzyme, res subunit Sigma54_activat PF00158.26 gi|530549289|ref|YP_008429839.1| - 0.021 14.5 0.1 0.65 9.7 0.0 2.5 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA_19 PF13245.6 gi|530549289|ref|YP_008429839.1| - 0.021 15.1 1.8 5.8 7.2 0.0 3.1 3 0 0 3 3 3 0 AAA domain AAA_33 PF13671.6 gi|530549289|ref|YP_008429839.1| - 0.023 14.8 1.5 6.1 7.0 0.3 2.5 2 0 0 2 2 2 0 AAA domain PRK PF00485.18 gi|530549289|ref|YP_008429839.1| - 0.028 14.2 0.1 8.4 6.1 0.0 2.4 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family Rad17 PF03215.15 gi|530549289|ref|YP_008429839.1| - 0.034 14.1 0.0 0.84 9.5 0.0 2.3 2 0 0 2 2 2 0 Rad17 P-loop domain Pox_A32 PF04665.12 gi|530549289|ref|YP_008429839.1| - 0.039 13.4 0.3 16 4.8 0.0 3.3 3 0 0 3 3 3 0 Poxvirus A32 protein MobB PF03205.14 gi|530549289|ref|YP_008429839.1| - 0.042 13.8 1.7 2 8.3 0.1 3.0 3 0 0 3 3 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_15 PF13175.6 gi|530549289|ref|YP_008429839.1| - 0.049 13.3 11.9 0.41 10.3 0.1 3.7 4 1 1 5 5 4 0 AAA ATPase domain APS_kinase PF01583.20 gi|530549289|ref|YP_008429839.1| - 0.058 13.3 0.1 3.7 7.4 0.0 2.5 2 0 0 2 2 2 0 Adenylylsulphate kinase DUF3584 PF12128.8 gi|530549289|ref|YP_008429839.1| - 0.061 10.8 0.7 4.5 4.7 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3584) Gemin6 PF06372.12 gi|530549289|ref|YP_008429839.1| - 0.084 12.4 0.0 3.7 7.1 0.0 2.3 2 0 0 2 2 2 0 Gemin6 protein DEAD PF00270.29 gi|530549289|ref|YP_008429839.1| - 0.099 12.4 0.4 2.6 7.8 0.0 2.7 3 0 0 3 3 2 0 DEAD/DEAH box helicase PhoH PF02562.16 gi|530549289|ref|YP_008429839.1| - 0.1 12.0 0.5 7.1 6.0 0.1 2.9 2 1 0 2 2 2 0 PhoH-like protein Gtr1_RagA PF04670.12 gi|530549289|ref|YP_008429839.1| - 0.13 11.6 0.1 1.5 8.1 0.0 2.5 2 0 0 2 2 2 0 Gtr1/RagA G protein conserved region Arf PF00025.21 gi|530549289|ref|YP_008429839.1| - 0.15 11.5 0.2 19 4.7 0.0 2.7 2 0 0 2 2 2 0 ADP-ribosylation factor family MMR_HSR1 PF01926.23 gi|530549289|ref|YP_008429839.1| - 0.17 12.0 0.3 26 5.0 0.0 3.0 3 0 0 3 3 2 0 50S ribosome-binding GTPase DAP3 PF10236.9 gi|530549289|ref|YP_008429839.1| - 0.35 10.0 1.3 9.7 5.2 0.1 3.0 3 0 0 3 3 3 0 Mitochondrial ribosomal death-associated protein 3 AAA_17 PF13207.6 gi|530549289|ref|YP_008429839.1| - 0.72 10.3 3.5 12 6.4 0.2 3.2 2 1 1 3 3 2 0 AAA domain CbiQ PF02361.16 gi|530549290|ref|YP_008429840.1| - 8.7e-29 100.7 6.2 1.4e-28 100.1 6.2 1.2 1 0 0 1 1 1 1 Cobalt transport protein 5TM-5TMR_LYT PF07694.12 gi|530549291|ref|YP_008429841.1| - 0.0036 16.8 6.2 0.0051 16.3 5.8 1.5 1 1 0 1 1 1 1 5TMR of 5TMR-LYT Nitroreductase PF00881.24 gi|530549292|ref|YP_008429842.1| - 9.5e-38 129.9 0.1 3.4e-18 66.3 0.0 2.0 1 1 1 2 2 2 2 Nitroreductase family TM1586_NiRdase PF14512.6 gi|530549292|ref|YP_008429842.1| - 8e-15 55.0 0.0 1.4e-05 24.8 0.0 3.2 1 1 2 3 3 3 3 Putative TM nitroreductase HTH_AsnC-type PF13404.6 gi|530549294|ref|YP_008429844.1| - 5.9e-13 48.4 1.7 1e-12 47.7 1.7 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|530549294|ref|YP_008429844.1| - 2.1e-12 46.4 1.5 4.9e-12 45.2 1.5 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|530549294|ref|YP_008429844.1| - 1.5e-06 28.0 0.6 3.3e-06 27.0 0.6 1.6 1 0 0 1 1 1 1 HTH domain HTH_DeoR PF08220.12 gi|530549294|ref|YP_008429844.1| - 6.7e-06 25.8 1.6 8.3e-06 25.5 0.7 1.7 2 0 0 2 2 1 1 DeoR-like helix-turn-helix domain HTH_23 PF13384.6 gi|530549294|ref|YP_008429844.1| - 8.5e-06 25.4 0.1 2.2e-05 24.1 0.1 1.7 1 0 0 1 1 1 1 Homeodomain-like domain HTH_7 PF02796.15 gi|530549294|ref|YP_008429844.1| - 0.0007 19.6 0.1 0.015 15.3 0.0 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain of resolvase HTH_38 PF13936.6 gi|530549294|ref|YP_008429844.1| - 0.00095 18.9 0.1 0.0026 17.5 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain Trp_repressor PF01371.19 gi|530549294|ref|YP_008429844.1| - 0.001 19.2 0.1 0.0027 17.8 0.1 1.7 1 0 0 1 1 1 1 Trp repressor protein TrmB PF01978.19 gi|530549294|ref|YP_008429844.1| - 0.0011 18.8 0.6 0.02 14.8 0.0 2.3 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB GntR PF00392.21 gi|530549294|ref|YP_008429844.1| - 0.0011 18.5 0.1 0.0024 17.5 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_Tnp_ISL3 PF13542.6 gi|530549294|ref|YP_008429844.1| - 0.0041 16.5 0.0 0.0072 15.7 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 HTH_28 PF13518.6 gi|530549294|ref|YP_008429844.1| - 0.0045 17.1 0.0 0.0093 16.1 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_29 PF13551.6 gi|530549294|ref|YP_008429844.1| - 0.009 16.0 0.1 0.018 15.1 0.1 1.5 1 0 0 1 1 1 1 Winged helix-turn helix HTH_IclR PF09339.10 gi|530549294|ref|YP_008429844.1| - 0.012 15.4 0.0 0.022 14.5 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain Fe_dep_repress PF01325.19 gi|530549294|ref|YP_008429844.1| - 0.021 15.0 0.0 0.041 14.1 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_36 PF13730.6 gi|530549294|ref|YP_008429844.1| - 0.032 14.2 0.1 0.062 13.3 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|530549294|ref|YP_008429844.1| - 0.043 13.5 0.0 0.1 12.3 0.0 1.7 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_3 PF01381.22 gi|530549294|ref|YP_008429844.1| - 0.044 13.9 0.1 0.11 12.5 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix Mga PF05043.13 gi|530549294|ref|YP_008429844.1| - 0.046 14.3 0.4 0.4 11.3 0.0 2.4 2 1 0 2 2 2 0 Mga helix-turn-helix domain AsnC_trans_reg PF01037.21 gi|530549294|ref|YP_008429844.1| - 0.047 13.7 0.0 0.079 12.9 0.0 1.4 1 0 0 1 1 1 0 Lrp/AsnC ligand binding domain DUF603 PF04645.12 gi|530549294|ref|YP_008429844.1| - 0.047 13.4 0.0 0.17 11.6 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function, DUF603 HTH_Crp_2 PF13545.6 gi|530549294|ref|YP_008429844.1| - 0.049 13.6 0.3 0.098 12.6 0.3 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_50 PF18024.1 gi|530549294|ref|YP_008429844.1| - 0.049 13.2 0.1 0.14 11.8 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain MarR PF01047.22 gi|530549294|ref|YP_008429844.1| - 0.055 13.4 0.1 0.11 12.4 0.1 1.5 1 0 0 1 1 1 0 MarR family HTH_20 PF12840.7 gi|530549294|ref|YP_008429844.1| - 0.079 13.0 0.2 0.28 11.3 0.0 2.0 3 0 0 3 3 2 0 Helix-turn-helix domain HTH_Mga PF08280.11 gi|530549294|ref|YP_008429844.1| - 0.084 12.9 0.4 0.19 11.8 0.1 1.8 2 0 0 2 2 2 0 M protein trans-acting positive regulator (MGA) HTH domain DUF3311 PF11755.8 gi|530549295|ref|YP_008429845.1| - 5.2e-11 42.3 4.9 6.6e-11 42.0 4.9 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3311) SSF PF00474.17 gi|530549296|ref|YP_008429846.1| - 4.9e-40 137.6 33.7 7.5e-40 137.0 33.7 1.3 1 0 0 1 1 1 1 Sodium:solute symporter family Peptidase_M20 PF01546.28 gi|530549297|ref|YP_008429847.1| - 1.7e-37 129.2 0.1 2.7e-37 128.5 0.1 1.3 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|530549297|ref|YP_008429847.1| - 3.4e-12 46.2 0.4 2.1e-11 43.7 0.0 2.1 2 0 0 2 2 2 1 Peptidase dimerisation domain Peptidase_M28 PF04389.17 gi|530549297|ref|YP_008429847.1| - 0.0017 18.1 0.1 0.003 17.3 0.1 1.4 1 0 0 1 1 1 1 Peptidase family M28 Peptidase_C15 PF01470.17 gi|530549298|ref|YP_008429848.1| - 3e-72 243.0 0.1 3.6e-72 242.8 0.1 1.0 1 0 0 1 1 1 1 Pyroglutamyl peptidase NYN PF01936.18 gi|530549299|ref|YP_008429849.1| - 7.2e-12 46.0 0.0 9.3e-12 45.7 0.0 1.1 1 0 0 1 1 1 1 NYN domain SpoU_methylase PF00588.19 gi|530549299|ref|YP_008429849.1| - 0.013 15.7 0.0 0.018 15.2 0.0 1.3 1 1 0 1 1 1 0 SpoU rRNA Methylase family CoA_binding_2 PF13380.6 gi|530549299|ref|YP_008429849.1| - 0.041 14.4 0.2 0.077 13.5 0.2 1.5 1 1 0 1 1 1 0 CoA binding domain HTH_AsnC-type PF13404.6 gi|530549300|ref|YP_008429850.1| - 6.5e-10 38.7 1.4 1e-09 38.1 1.4 1.3 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|530549300|ref|YP_008429850.1| - 8.9e-10 38.0 0.4 1.5e-09 37.2 0.2 1.5 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding BpuJI_N PF11564.8 gi|530549300|ref|YP_008429850.1| - 0.00034 19.9 0.8 0.00048 19.4 0.8 1.2 1 0 0 1 1 1 1 Restriction endonuclease BpuJI - N terminal AsnC_trans_reg PF01037.21 gi|530549300|ref|YP_008429850.1| - 0.00092 19.1 0.0 0.0014 18.6 0.0 1.3 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_11 PF08279.12 gi|530549300|ref|YP_008429850.1| - 0.057 13.4 0.1 0.13 12.2 0.1 1.6 1 0 0 1 1 1 0 HTH domain TrmB PF01978.19 gi|530549300|ref|YP_008429850.1| - 0.064 13.2 0.0 0.13 12.2 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_DeoR PF08220.12 gi|530549300|ref|YP_008429850.1| - 0.083 12.6 0.0 0.16 11.7 0.0 1.5 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain SBP_bac_5 PF00496.22 gi|530549301|ref|YP_008429851.1| - 6.4e-93 311.7 3.0 6.4e-93 311.7 3.0 1.4 2 0 0 2 2 2 1 Bacterial extracellular solute-binding proteins, family 5 Middle MIT PF04212.18 gi|530549301|ref|YP_008429851.1| - 0.18 11.9 0.1 0.43 10.7 0.1 1.6 1 0 0 1 1 1 0 MIT (microtubule interacting and transport) domain BPD_transp_1 PF00528.22 gi|530549302|ref|YP_008429852.1| - 1.8e-42 145.2 17.4 1.8e-42 145.2 17.4 2.0 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|530549303|ref|YP_008429853.1| - 9.4e-32 110.2 9.1 9.4e-32 110.2 9.1 2.3 3 0 0 3 3 3 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|530549303|ref|YP_008429853.1| - 3e-12 46.3 0.2 3e-12 46.3 0.2 2.8 2 1 0 2 2 2 1 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.22 gi|530549304|ref|YP_008429854.1| - 0.00068 19.4 0.0 0.00068 19.4 0.0 1.0 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 gi|530549305|ref|YP_008429855.1| - 1.3e-31 110.0 0.0 1.7e-31 109.6 0.0 1.1 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|530549305|ref|YP_008429855.1| - 2.8e-22 79.0 0.3 5.5e-22 78.1 0.3 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|530549305|ref|YP_008429855.1| - 4.3e-05 23.5 3.1 8e-05 22.6 1.1 2.0 1 1 1 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|530549305|ref|YP_008429855.1| - 4.5e-05 23.0 0.0 6.7e-05 22.4 0.0 1.2 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|530549305|ref|YP_008429855.1| - 0.00022 21.5 0.6 0.0021 18.4 0.6 2.1 1 1 0 1 1 1 1 AAA domain AIG1 PF04548.16 gi|530549305|ref|YP_008429855.1| - 0.014 14.7 0.2 0.055 12.8 0.1 1.9 1 1 1 2 2 2 0 AIG1 family AAA_7 PF12775.7 gi|530549305|ref|YP_008429855.1| - 0.024 14.1 0.0 0.047 13.2 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region Mg_chelatase PF01078.21 gi|530549305|ref|YP_008429855.1| - 0.042 13.2 0.0 0.19 11.1 0.0 1.9 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_16 PF13191.6 gi|530549305|ref|YP_008429855.1| - 0.083 13.3 0.0 0.15 12.4 0.0 1.6 1 1 0 1 1 1 0 AAA ATPase domain DUF87 PF01935.17 gi|530549305|ref|YP_008429855.1| - 0.091 12.8 1.6 0.23 11.5 1.6 1.9 1 1 0 1 1 1 0 Helicase HerA, central domain AAA PF00004.29 gi|530549305|ref|YP_008429855.1| - 0.097 13.1 0.1 0.31 11.5 0.1 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) ABC_tran PF00005.27 gi|530549306|ref|YP_008429856.1| - 2.8e-34 118.6 0.0 3.7e-34 118.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|530549306|ref|YP_008429856.1| - 1.6e-19 70.2 0.2 3.6e-19 69.0 0.2 1.6 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|530549306|ref|YP_008429856.1| - 8.2e-08 32.4 0.9 0.00032 20.6 0.1 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|530549306|ref|YP_008429856.1| - 1.6e-05 24.5 0.4 0.00032 20.2 0.4 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|530549306|ref|YP_008429856.1| - 1.7e-05 25.1 0.2 0.00019 21.7 0.2 2.0 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|530549306|ref|YP_008429856.1| - 0.00018 21.9 0.0 0.00029 21.3 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|530549306|ref|YP_008429856.1| - 0.0012 18.6 0.1 0.0019 17.9 0.1 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_5 PF07728.14 gi|530549306|ref|YP_008429856.1| - 0.011 15.7 0.3 0.24 11.4 0.1 2.2 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) G-alpha PF00503.20 gi|530549306|ref|YP_008429856.1| - 0.012 14.8 0.0 0.012 14.7 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit RsgA_GTPase PF03193.16 gi|530549306|ref|YP_008429856.1| - 0.035 14.0 0.0 0.055 13.4 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase SbcCD_C PF13558.6 gi|530549306|ref|YP_008429856.1| - 0.16 12.2 0.1 0.61 10.4 0.1 1.9 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit Asp_Glu_race PF01177.22 gi|530549307|ref|YP_008429857.1| - 3.4e-10 40.1 0.0 4.9e-10 39.6 0.0 1.2 1 0 0 1 1 1 1 Asp/Glu/Hydantoin racemase AroM PF07302.11 gi|530549307|ref|YP_008429857.1| - 0.0002 20.8 0.0 0.00037 20.0 0.0 1.3 1 1 0 1 1 1 1 AroM protein DRTGG PF07085.12 gi|530549307|ref|YP_008429857.1| - 0.16 11.8 0.0 18 5.2 0.0 2.3 2 0 0 2 2 2 0 DRTGG domain DUF917 PF06032.12 gi|530549308|ref|YP_008429858.1| - 4.1e-108 361.3 0.0 4.6e-108 361.2 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF917) Asp_Glu_race PF01177.22 gi|530549309|ref|YP_008429859.1| - 3.9e-12 46.5 0.6 4.8e-12 46.2 0.6 1.1 1 0 0 1 1 1 1 Asp/Glu/Hydantoin racemase AroM PF07302.11 gi|530549309|ref|YP_008429859.1| - 0.0052 16.2 0.1 0.0086 15.5 0.1 1.6 1 1 0 1 1 1 1 AroM protein AIRC PF00731.20 gi|530549309|ref|YP_008429859.1| - 0.019 14.5 0.2 0.044 13.4 0.1 1.7 2 1 0 2 2 2 0 AIR carboxylase Pantoate_transf PF02548.15 gi|530549309|ref|YP_008429859.1| - 0.071 12.5 0.6 0.11 11.8 0.2 1.5 2 0 0 2 2 2 0 Ketopantoate hydroxymethyltransferase Peptidase_M29 PF02073.15 gi|530549310|ref|YP_008429860.1| - 0.016 14.0 0.1 2.5 6.8 0.0 2.1 2 0 0 2 2 2 0 Thermophilic metalloprotease (M29) Urease_beta PF00699.20 gi|530549310|ref|YP_008429860.1| - 0.18 11.9 0.0 3.4 7.8 0.0 2.3 2 0 0 2 2 2 0 Urease beta subunit Lactamase_B PF00753.27 gi|530549312|ref|YP_008429862.1| - 9.3e-28 97.6 0.8 1.3e-27 97.1 0.8 1.1 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|530549312|ref|YP_008429862.1| - 2.6e-07 30.4 0.0 3.9e-07 29.8 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain MJ1316 PF04457.12 gi|530549313|ref|YP_008429863.1| - 3.7e-14 53.2 0.4 4e-14 53.1 0.4 1.0 1 0 0 1 1 1 1 MJ1316 RNA cyclic group end recognition domain DUF835 PF05763.12 gi|530549314|ref|YP_008429864.1| - 4.2e-26 91.3 0.1 8.1e-26 90.4 0.1 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF835) Rubrerythrin PF02915.17 gi|530549314|ref|YP_008429864.1| - 0.0012 19.2 3.1 0.0021 18.5 3.1 1.4 1 0 0 1 1 1 1 Rubrerythrin DUF2383 PF09537.10 gi|530549314|ref|YP_008429864.1| - 0.1 13.0 0.5 7.3 7.0 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF2383) GST_N_5 PF18485.1 gi|530549314|ref|YP_008429864.1| - 0.11 12.9 0.8 0.85 10.0 0.1 2.3 2 0 0 2 2 2 0 Glutathione S-transferase, N-terminal domain TatD_DNase PF01026.21 gi|530549315|ref|YP_008429865.1| - 6.5e-56 189.5 0.2 7.4e-56 189.4 0.2 1.0 1 0 0 1 1 1 1 TatD related DNase Amidohydro_2 PF04909.14 gi|530549315|ref|YP_008429865.1| - 2.4e-05 24.2 0.8 0.015 15.1 0.0 2.8 1 1 0 3 3 3 2 Amidohydrolase Amidohydro_1 PF01979.20 gi|530549315|ref|YP_008429865.1| - 0.00047 19.6 0.7 0.0018 17.7 0.7 1.8 1 1 0 1 1 1 1 Amidohydrolase family DUF3216 PF11505.8 gi|530549316|ref|YP_008429866.1| - 1.1e-34 118.5 3.8 1.2e-34 118.4 3.8 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3216) DUF3654 PF12376.8 gi|530549316|ref|YP_008429866.1| - 0.011 15.9 0.9 0.014 15.6 0.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3654) Com_YlbF PF06133.11 gi|530549316|ref|YP_008429866.1| - 0.063 13.9 2.1 4 8.1 0.2 2.1 2 0 0 2 2 2 0 Control of competence regulator ComK, YlbF/YmcA DUF4315 PF14193.6 gi|530549316|ref|YP_008429866.1| - 0.48 10.5 5.2 0.37 10.8 1.1 2.2 2 1 0 2 2 2 0 Domain of unknown function (DUF4315) Pterin_bind PF00809.22 gi|530549317|ref|YP_008429867.1| - 1e-05 25.3 0.0 2.5e-05 24.1 0.0 1.6 1 0 0 1 1 1 1 Pterin binding enzyme DUF4346 PF14251.6 gi|530549317|ref|YP_008429867.1| - 5.7e-05 23.1 0.0 0.00013 22.0 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4346) CdhD PF03599.16 gi|530549317|ref|YP_008429867.1| - 0.073 11.8 0.0 1.9 7.1 0.0 2.2 2 0 0 2 2 2 0 CO dehydrogenase/acetyl-CoA synthase delta subunit DUF4830 PF16112.5 gi|530549317|ref|YP_008429867.1| - 0.11 13.0 0.0 0.28 11.7 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4830) ABC_tran PF00005.27 gi|530549318|ref|YP_008429868.1| - 1.1e-27 97.2 0.0 2e-27 96.4 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|530549318|ref|YP_008429868.1| - 1.7e-13 51.0 4.3 2.2e-08 34.3 0.3 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|530549318|ref|YP_008429868.1| - 0.00023 21.7 0.3 0.0033 17.9 0.3 2.1 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|530549318|ref|YP_008429868.1| - 0.0031 17.8 0.6 2.7 8.3 0.0 2.5 3 0 0 3 3 3 2 AAA domain AAA_29 PF13555.6 gi|530549318|ref|YP_008429868.1| - 0.0072 16.0 0.3 0.014 15.1 0.3 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|530549318|ref|YP_008429868.1| - 0.0082 15.6 0.2 0.73 9.2 0.1 2.2 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_30 PF13604.6 gi|530549318|ref|YP_008429868.1| - 0.026 14.2 0.1 0.089 12.5 0.1 1.9 1 1 0 1 1 1 0 AAA domain MeaB PF03308.16 gi|530549318|ref|YP_008429868.1| - 0.039 12.9 0.1 0.064 12.2 0.1 1.3 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB SbcCD_C PF13558.6 gi|530549318|ref|YP_008429868.1| - 0.045 14.0 0.0 0.092 13.0 0.0 1.6 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_16 PF13191.6 gi|530549318|ref|YP_008429868.1| - 0.088 13.2 0.1 0.34 11.3 0.1 1.9 1 1 0 1 1 1 0 AAA ATPase domain SRP54 PF00448.22 gi|530549318|ref|YP_008429868.1| - 0.09 12.4 0.0 0.17 11.5 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Rad17 PF03215.15 gi|530549318|ref|YP_008429868.1| - 0.13 12.2 0.0 0.27 11.2 0.0 1.6 1 0 0 1 1 1 0 Rad17 P-loop domain DUF87 PF01935.17 gi|530549318|ref|YP_008429868.1| - 0.14 12.2 1.3 0.5 10.4 1.3 2.2 1 1 0 1 1 1 0 Helicase HerA, central domain AAA PF00004.29 gi|530549318|ref|YP_008429868.1| - 0.16 12.4 1.3 0.96 9.9 0.4 2.5 1 1 1 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_15 PF13175.6 gi|530549318|ref|YP_008429868.1| - 0.2 11.4 4.2 0.55 9.9 0.1 2.6 2 1 1 3 3 3 0 AAA ATPase domain 12TM_1 PF09847.9 gi|530549319|ref|YP_008429869.1| - 7.8e-60 203.2 44.3 9.3e-60 203.0 44.3 1.0 1 0 0 1 1 1 1 Membrane protein of 12 TMs DUF498 PF04430.14 gi|530549320|ref|YP_008429870.1| - 9.3e-15 54.6 0.0 1e-14 54.5 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF498/DUF598) NUDIX PF00293.28 gi|530549321|ref|YP_008429871.1| - 5.8e-25 87.8 0.0 8.9e-25 87.2 0.0 1.2 1 0 0 1 1 1 1 NUDIX domain NUDIX_4 PF14815.6 gi|530549321|ref|YP_008429871.1| - 0.0035 17.3 0.0 0.0055 16.7 0.0 1.4 1 1 0 1 1 1 1 NUDIX domain DUF4916 PF16262.5 gi|530549321|ref|YP_008429871.1| - 0.095 12.2 0.0 2.2 7.7 0.0 2.1 1 1 0 1 1 1 0 Domain of unknown function (DUF4916) DUF2521 PF10730.9 gi|530549321|ref|YP_008429871.1| - 0.14 12.2 0.0 0.41 10.7 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2521) PfkB PF00294.24 gi|530549322|ref|YP_008429872.1| - 6.4e-12 45.4 0.0 2.5e-07 30.3 0.0 2.1 2 0 0 2 2 2 2 pfkB family carbohydrate kinase MCR_beta_N PF02783.15 gi|530549322|ref|YP_008429872.1| - 0.0068 16.1 0.2 0.015 15.0 0.1 1.5 2 0 0 2 2 2 1 Methyl-coenzyme M reductase beta subunit, N-terminal domain DHDPS PF00701.22 gi|530549323|ref|YP_008429873.1| - 1.9e-69 233.6 0.0 2.1e-69 233.4 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family WHIM1 PF15612.6 gi|530549323|ref|YP_008429873.1| - 0.043 13.4 0.1 0.17 11.5 0.0 2.0 2 0 0 2 2 2 0 WSTF, HB1, Itc1p, MBD9 motif 1 HupF_HypC PF01455.18 gi|530549324|ref|YP_008429874.1| - 2.1e-28 98.3 0.2 2.4e-28 98.1 0.2 1.1 1 0 0 1 1 1 1 HupF/HypC family 4HBT PF03061.22 gi|530549324|ref|YP_008429874.1| - 0.057 13.8 0.1 0.076 13.4 0.1 1.3 1 0 0 1 1 1 0 Thioesterase superfamily HypD PF01924.16 gi|530549325|ref|YP_008429875.1| - 1.5e-137 458.4 0.0 1.7e-137 458.2 0.0 1.0 1 0 0 1 1 1 1 Hydrogenase formation hypA family DUF624 PF04854.14 gi|530549325|ref|YP_008429875.1| - 0.11 12.7 0.0 0.28 11.3 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function, DUF624 Aminotran_1_2 PF00155.21 gi|530549326|ref|YP_008429876.1| - 4.1e-57 194.0 0.0 5e-57 193.7 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 gi|530549326|ref|YP_008429876.1| - 5.2e-06 26.0 0.0 8.5e-06 25.3 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.17 gi|530549326|ref|YP_008429876.1| - 1e-05 25.1 0.0 2.8e-05 23.6 0.0 1.7 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 gi|530549326|ref|YP_008429876.1| - 0.0045 16.0 0.0 0.038 13.0 0.0 2.1 2 0 0 2 2 2 1 Aminotransferase class-V ThiS PF02597.20 gi|530549327|ref|YP_008429877.1| - 2.7e-10 40.8 0.3 2.9e-10 40.6 0.3 1.0 1 0 0 1 1 1 1 ThiS family TGS PF02824.21 gi|530549327|ref|YP_008429877.1| - 0.0026 17.8 0.1 0.0032 17.5 0.1 1.3 1 1 0 1 1 1 1 TGS domain Ub-Mut7C PF14451.6 gi|530549327|ref|YP_008429877.1| - 0.0029 17.4 0.1 0.0032 17.3 0.1 1.1 1 0 0 1 1 1 1 Mut7-C ubiquitin DUF835 PF05763.12 gi|530549328|ref|YP_008429878.1| - 3.2e-31 107.9 0.1 4.6e-31 107.4 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF835) DUF4956 PF16316.5 gi|530549328|ref|YP_008429878.1| - 0.2 11.3 1.8 0.54 9.9 1.5 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4956) DUF2583 PF10762.9 gi|530549328|ref|YP_008429878.1| - 1.1 9.7 4.2 0.67 10.4 0.6 2.5 2 1 1 3 3 3 0 Protein of unknown function (DUF2583) HTH_24 PF13412.6 gi|530549329|ref|YP_008429879.1| - 2.9e-19 68.3 0.7 2.9e-19 68.3 0.7 1.8 2 0 0 2 2 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|530549329|ref|YP_008429879.1| - 4.1e-18 64.9 0.1 7e-18 64.2 0.1 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain AsnC_trans_reg PF01037.21 gi|530549329|ref|YP_008429879.1| - 7.7e-15 54.6 0.1 1.2e-14 54.1 0.1 1.3 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_23 PF13384.6 gi|530549329|ref|YP_008429879.1| - 3.5e-07 29.8 0.2 6.7e-07 28.9 0.2 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_11 PF08279.12 gi|530549329|ref|YP_008429879.1| - 7.3e-07 29.0 0.0 1.5e-06 28.1 0.0 1.5 1 0 0 1 1 1 1 HTH domain HTH_28 PF13518.6 gi|530549329|ref|YP_008429879.1| - 9.2e-07 28.9 0.1 1.8e-06 28.0 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_20 PF12840.7 gi|530549329|ref|YP_008429879.1| - 6.9e-06 26.0 0.0 1.1e-05 25.3 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|530549329|ref|YP_008429879.1| - 2.6e-05 23.8 0.1 4.7e-05 23.0 0.1 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 MarR PF01047.22 gi|530549329|ref|YP_008429879.1| - 3.3e-05 23.7 0.1 8.9e-05 22.3 0.0 1.7 2 0 0 2 2 1 1 MarR family HTH_38 PF13936.6 gi|530549329|ref|YP_008429879.1| - 4.2e-05 23.2 0.2 4.2e-05 23.2 0.2 2.0 3 0 0 3 3 2 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|530549329|ref|YP_008429879.1| - 4.5e-05 23.2 0.0 7.4e-05 22.5 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_29 PF13551.6 gi|530549329|ref|YP_008429879.1| - 0.00018 21.5 0.0 0.00032 20.7 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn helix GntR PF00392.21 gi|530549329|ref|YP_008429879.1| - 0.00029 20.4 0.3 0.00067 19.3 0.2 1.6 2 0 0 2 2 1 1 Bacterial regulatory proteins, gntR family TrmB PF01978.19 gi|530549329|ref|YP_008429879.1| - 0.001 18.9 0.2 0.0031 17.4 0.0 1.8 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.6 gi|530549329|ref|YP_008429879.1| - 0.0012 18.7 0.0 0.0033 17.4 0.0 1.7 2 0 0 2 2 1 1 Crp-like helix-turn-helix domain HTH_IclR PF09339.10 gi|530549329|ref|YP_008429879.1| - 0.0016 18.2 0.0 0.0024 17.6 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain TetR_N PF00440.23 gi|530549329|ref|YP_008429879.1| - 0.0035 17.1 0.1 0.011 15.5 0.1 1.8 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family HTH_50 PF18024.1 gi|530549329|ref|YP_008429879.1| - 0.0068 16.0 0.1 0.018 14.7 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_36 PF13730.6 gi|530549329|ref|YP_008429879.1| - 0.0075 16.2 0.0 0.012 15.5 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_40 PF14493.6 gi|530549329|ref|YP_008429879.1| - 0.014 15.8 0.2 0.035 14.6 0.1 1.8 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_30 PF13556.6 gi|530549329|ref|YP_008429879.1| - 0.015 15.0 0.0 0.029 14.2 0.0 1.4 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain AsnC_trans_reg2 PF17805.1 gi|530549329|ref|YP_008429879.1| - 0.022 14.9 0.0 0.04 14.1 0.0 1.4 1 0 0 1 1 1 0 AsnC-like ligand binding domain HTH_41 PF14502.6 gi|530549329|ref|YP_008429879.1| - 0.022 14.4 0.1 0.062 13.0 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain TnsD PF15978.5 gi|530549329|ref|YP_008429879.1| - 0.025 13.6 0.1 0.035 13.1 0.1 1.1 1 0 0 1 1 1 0 Tn7-like transposition protein D MarR_2 PF12802.7 gi|530549329|ref|YP_008429879.1| - 0.026 14.4 0.0 0.049 13.5 0.0 1.4 1 0 0 1 1 1 0 MarR family RepL PF05732.11 gi|530549329|ref|YP_008429879.1| - 0.031 13.7 0.0 0.077 12.4 0.0 1.6 2 0 0 2 2 2 0 Firmicute plasmid replication protein (RepL) HTH_DeoR PF08220.12 gi|530549329|ref|YP_008429879.1| - 0.04 13.7 0.0 0.082 12.7 0.0 1.5 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 gi|530549329|ref|YP_008429879.1| - 0.045 13.2 0.0 0.067 12.6 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 PadR PF03551.14 gi|530549329|ref|YP_008429879.1| - 0.048 13.6 0.0 0.086 12.8 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family GYD PF08734.11 gi|530549329|ref|YP_008429879.1| - 0.049 13.6 0.1 0.24 11.4 0.0 1.9 2 0 0 2 2 2 0 GYD domain HTH_CodY PF08222.11 gi|530549329|ref|YP_008429879.1| - 0.052 13.1 0.0 0.099 12.2 0.0 1.5 1 0 0 1 1 1 0 CodY helix-turn-helix domain FUR PF01475.19 gi|530549329|ref|YP_008429879.1| - 0.055 13.6 0.0 0.089 12.9 0.0 1.6 1 1 0 1 1 1 0 Ferric uptake regulator family Sigma70_r4 PF04545.16 gi|530549329|ref|YP_008429879.1| - 0.059 12.9 0.2 0.13 11.9 0.2 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 LexA_DNA_bind PF01726.16 gi|530549329|ref|YP_008429879.1| - 0.062 13.1 0.0 0.1 12.4 0.0 1.4 1 0 0 1 1 1 0 LexA DNA binding domain HTH_32 PF13565.6 gi|530549329|ref|YP_008429879.1| - 0.072 13.7 0.1 1.4 9.6 0.1 2.2 1 1 1 2 2 2 0 Homeodomain-like domain HTH_34 PF13601.6 gi|530549329|ref|YP_008429879.1| - 0.097 12.9 0.0 0.25 11.6 0.0 1.6 2 0 0 2 2 1 0 Winged helix DNA-binding domain Crp PF00325.20 gi|530549329|ref|YP_008429879.1| - 0.12 12.0 0.5 0.32 10.7 0.1 1.9 2 0 0 2 2 2 0 Bacterial regulatory proteins, crp family Pribosyltran PF00156.27 gi|530549331|ref|YP_008429881.1| - 7.7e-11 41.8 0.1 1.2e-10 41.1 0.1 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain HTH_3 PF01381.22 gi|530549331|ref|YP_008429881.1| - 3.2e-07 30.3 0.5 7.2e-07 29.2 0.5 1.6 1 0 0 1 1 1 1 Helix-turn-helix UPRTase PF14681.6 gi|530549331|ref|YP_008429881.1| - 0.018 14.5 0.0 0.029 13.8 0.0 1.4 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase HTH_24 PF13412.6 gi|530549331|ref|YP_008429881.1| - 0.019 14.5 0.4 0.063 12.8 0.4 1.9 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Trp_repressor PF01371.19 gi|530549331|ref|YP_008429881.1| - 0.03 14.4 0.4 0.64 10.2 0.2 2.5 2 0 0 2 2 2 0 Trp repressor protein HTH_26 PF13443.6 gi|530549331|ref|YP_008429881.1| - 0.099 13.1 0.0 0.23 11.9 0.0 1.6 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain CxxCxxCC PF03692.15 gi|530549332|ref|YP_008429882.1| - 1.6e-16 60.7 0.6 2.3e-16 60.2 0.6 1.2 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain AsnC_trans_reg PF01037.21 gi|530549333|ref|YP_008429883.1| - 1.9e-15 56.6 0.2 2.2e-15 56.4 0.2 1.0 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain NapD PF03927.13 gi|530549333|ref|YP_008429883.1| - 0.009 16.0 0.1 0.017 15.2 0.1 1.4 1 1 0 1 1 1 1 NapD protein Imm39 PF15568.6 gi|530549333|ref|YP_008429883.1| - 0.023 14.8 0.5 0.025 14.7 0.5 1.1 1 0 0 1 1 1 0 Immunity protein 39 SRP54 PF00448.22 gi|530549334|ref|YP_008429884.1| - 3.1e-76 255.4 0.0 6e-76 254.5 0.0 1.5 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP_SPB PF02978.19 gi|530549334|ref|YP_008429884.1| - 2.7e-34 117.7 4.2 3.6e-34 117.3 2.2 2.3 3 0 0 3 3 1 1 Signal peptide binding domain SRP54_N PF02881.19 gi|530549334|ref|YP_008429884.1| - 7.2e-20 71.0 2.5 7.2e-20 71.0 2.5 3.0 3 0 0 3 3 2 1 SRP54-type protein, helical bundle domain CbiA PF01656.23 gi|530549334|ref|YP_008429884.1| - 3.8e-06 27.0 0.0 1.1e-05 25.5 0.0 1.8 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_22 PF13401.6 gi|530549334|ref|YP_008429884.1| - 4.3e-05 23.8 0.2 0.00026 21.3 0.0 2.3 3 0 0 3 3 3 1 AAA domain cobW PF02492.19 gi|530549334|ref|YP_008429884.1| - 0.00025 20.7 0.5 0.5 9.9 0.1 2.8 3 0 0 3 3 3 2 CobW/HypB/UreG, nucleotide-binding domain MobB PF03205.14 gi|530549334|ref|YP_008429884.1| - 0.00052 19.9 0.5 0.0019 18.1 0.1 2.1 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B IMPDH PF00478.25 gi|530549334|ref|YP_008429884.1| - 0.0024 17.0 0.4 0.0048 15.9 0.4 1.5 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain Zeta_toxin PF06414.12 gi|530549334|ref|YP_008429884.1| - 0.003 16.9 0.1 0.0087 15.4 0.1 1.8 1 1 0 1 1 1 1 Zeta toxin AAA_16 PF13191.6 gi|530549334|ref|YP_008429884.1| - 0.0052 17.2 0.0 0.019 15.3 0.0 2.0 1 1 1 2 2 2 1 AAA ATPase domain AAA_30 PF13604.6 gi|530549334|ref|YP_008429884.1| - 0.0069 16.1 0.9 0.015 15.1 0.1 2.0 2 1 0 2 2 1 1 AAA domain MeaB PF03308.16 gi|530549334|ref|YP_008429884.1| - 0.0077 15.3 0.1 0.065 12.2 0.0 2.2 2 0 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB NTPase_1 PF03266.15 gi|530549334|ref|YP_008429884.1| - 0.008 16.1 0.9 0.064 13.2 0.0 2.4 2 0 0 2 2 2 1 NTPase AAA_17 PF13207.6 gi|530549334|ref|YP_008429884.1| - 0.0084 16.5 1.3 0.0084 16.5 1.3 2.9 3 1 0 3 3 2 1 AAA domain AAA_33 PF13671.6 gi|530549334|ref|YP_008429884.1| - 0.012 15.7 0.0 0.024 14.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain RNase_Zc3h12a PF11977.8 gi|530549334|ref|YP_008429884.1| - 0.018 14.9 0.0 1.7 8.4 0.0 2.6 1 1 1 2 2 2 0 Zc3h12a-like Ribonuclease NYN domain ATP_bind_1 PF03029.17 gi|530549334|ref|YP_008429884.1| - 0.026 14.3 0.7 0.058 13.2 0.1 1.9 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein Fe-ADH PF00465.19 gi|530549334|ref|YP_008429884.1| - 0.029 13.2 0.0 0.057 12.2 0.0 1.5 1 0 0 1 1 1 0 Iron-containing alcohol dehydrogenase tRNA_lig_kinase PF08303.11 gi|530549334|ref|YP_008429884.1| - 0.03 14.4 1.4 0.83 9.7 0.0 2.9 3 0 0 3 3 3 0 tRNA ligase kinase domain Glyco_transf_4 PF13439.6 gi|530549334|ref|YP_008429884.1| - 0.034 14.1 0.0 0.1 12.6 0.0 1.8 2 0 0 2 2 2 0 Glycosyltransferase Family 4 Thymidylate_kin PF02223.17 gi|530549334|ref|YP_008429884.1| - 0.036 13.7 1.6 0.057 13.1 0.1 2.0 2 0 0 2 2 2 0 Thymidylate kinase LpxK PF02606.14 gi|530549334|ref|YP_008429884.1| - 0.038 13.1 0.6 0.11 11.5 0.1 1.9 2 0 0 2 2 2 0 Tetraacyldisaccharide-1-P 4'-kinase KTI12 PF08433.10 gi|530549334|ref|YP_008429884.1| - 0.041 13.3 0.6 0.19 11.2 0.0 2.3 3 0 0 3 3 3 0 Chromatin associated protein KTI12 ResIII PF04851.15 gi|530549334|ref|YP_008429884.1| - 0.049 13.6 0.2 1.6 8.7 0.1 2.6 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit MMR_HSR1 PF01926.23 gi|530549334|ref|YP_008429884.1| - 0.059 13.4 0.2 0.31 11.1 0.2 2.3 1 1 0 1 1 1 0 50S ribosome-binding GTPase ParA PF10609.9 gi|530549334|ref|YP_008429884.1| - 0.067 12.6 0.0 0.16 11.4 0.0 1.6 1 0 0 1 1 1 0 NUBPL iron-transfer P-loop NTPase CLP1_P PF16575.5 gi|530549334|ref|YP_008429884.1| - 0.068 13.0 0.1 6.5 6.5 0.0 2.6 2 0 0 2 2 2 0 mRNA cleavage and polyadenylation factor CLP1 P-loop APS_kinase PF01583.20 gi|530549334|ref|YP_008429884.1| - 0.092 12.6 0.1 0.39 10.6 0.0 2.1 2 0 0 2 2 2 0 Adenylylsulphate kinase RNA_helicase PF00910.22 gi|530549334|ref|YP_008429884.1| - 0.092 13.1 0.0 0.34 11.3 0.0 1.9 1 1 0 1 1 1 0 RNA helicase 6PF2K PF01591.18 gi|530549334|ref|YP_008429884.1| - 0.12 11.7 1.1 0.4 10.0 0.0 2.4 2 2 0 2 2 2 0 6-phosphofructo-2-kinase AAA PF00004.29 gi|530549334|ref|YP_008429884.1| - 0.15 12.5 0.7 2.7 8.4 0.1 3.0 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) MFS_1 PF07690.16 gi|530549336|ref|YP_008429886.1| - 6.9e-43 146.9 54.3 1.8e-29 102.8 33.4 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|530549336|ref|YP_008429886.1| - 3.4e-41 141.6 30.5 4.1e-41 141.3 30.5 1.1 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_4 PF06779.14 gi|530549336|ref|YP_008429886.1| - 0.041 13.2 36.4 10 5.3 36.4 2.1 1 1 0 1 1 1 0 Uncharacterised MFS-type transporter YbfB DUF89 PF01937.19 gi|530549337|ref|YP_008429887.1| - 2.6e-50 171.4 0.2 2.8e-50 171.2 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF89 Ycf54 PF10674.9 gi|530549338|ref|YP_008429888.1| - 0.12 12.7 0.0 0.13 12.5 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2488) DUF4889 PF16230.5 gi|530549338|ref|YP_008429888.1| - 0.38 11.0 6.0 5.5 7.3 0.4 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4889) TPR_1 PF00515.28 gi|530549339|ref|YP_008429889.1| - 0.25 11.2 1.6 5.6 7.0 0.0 2.9 3 0 0 3 3 3 0 Tetratricopeptide repeat RPN7 PF10602.9 gi|530549340|ref|YP_008429890.1| - 0.00039 20.2 0.4 9.9 5.8 0.0 3.8 1 1 2 3 3 3 2 26S proteasome subunit RPN7 ATP13 PF12921.7 gi|530549340|ref|YP_008429890.1| - 0.00094 19.0 0.0 0.4 10.6 0.0 3.3 2 2 1 3 3 3 1 Mitochondrial ATPase expression PPR_2 PF13041.6 gi|530549340|ref|YP_008429890.1| - 0.0014 18.8 1.3 6.5 7.0 0.0 4.4 6 0 0 6 6 6 2 PPR repeat family PPR PF01535.20 gi|530549340|ref|YP_008429890.1| - 0.0049 17.0 4.3 18 5.8 0.0 5.3 6 0 0 6 6 6 1 PPR repeat TPR_6 PF13174.6 gi|530549340|ref|YP_008429890.1| - 0.042 14.5 2.4 85 4.1 0.1 4.9 5 1 0 5 5 5 0 Tetratricopeptide repeat Toprim_N PF08275.11 gi|530549340|ref|YP_008429890.1| - 0.089 12.9 0.0 0.19 11.8 0.0 1.5 1 0 0 1 1 1 0 DNA primase catalytic core, N-terminal domain TPR_1 PF00515.28 gi|530549340|ref|YP_008429890.1| - 0.69 9.8 5.4 14 5.7 0.0 4.0 4 0 0 4 4 4 0 Tetratricopeptide repeat Clathrin PF00637.20 gi|530549340|ref|YP_008429890.1| - 0.8 9.6 4.6 15 5.4 0.8 3.6 1 1 2 3 3 3 0 Region in Clathrin and VPS TPR_2 PF07719.17 gi|530549340|ref|YP_008429890.1| - 0.84 9.9 5.5 27 5.2 0.0 4.0 4 0 0 4 4 4 0 Tetratricopeptide repeat PNP_UDP_1 PF01048.20 gi|530549341|ref|YP_008429891.1| - 1e-51 175.4 0.0 1.2e-51 175.3 0.0 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily DUF835 PF05763.12 gi|530549342|ref|YP_008429892.1| - 3.8e-29 101.2 0.0 6.6e-29 100.4 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF835) Elong_Iki1 PF10483.9 gi|530549342|ref|YP_008429892.1| - 0.0088 15.6 0.0 0.012 15.2 0.0 1.1 1 0 0 1 1 1 1 Elongator subunit Iki1 NTP_transf_2 PF01909.23 gi|530549343|ref|YP_008429893.1| - 2.7e-09 37.2 0.9 2.7e-08 34.0 0.9 2.3 1 1 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|530549343|ref|YP_008429893.1| - 2.7e-05 24.2 0.3 0.00011 22.2 0.1 2.1 2 1 0 2 2 2 1 Polymerase beta, Nucleotidyltransferase DUF4269 PF14091.6 gi|530549343|ref|YP_008429893.1| - 0.00073 19.8 0.0 0.0014 18.9 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4269) SNAP PF14938.6 gi|530549345|ref|YP_008429895.1| - 0.0016 18.0 15.3 0.087 12.2 0.9 4.3 2 1 2 4 4 4 3 Soluble NSF attachment protein, SNAP TPR_1 PF00515.28 gi|530549345|ref|YP_008429895.1| - 0.036 13.9 0.3 0.036 13.9 0.3 5.0 6 0 0 6 6 6 0 Tetratricopeptide repeat Sua5_yciO_yrdC PF01300.18 gi|530549346|ref|YP_008429896.1| - 2.5e-60 203.0 0.0 4.9e-60 202.1 0.0 1.5 1 0 0 1 1 1 1 Telomere recombination SUA5 PF03481.13 gi|530549346|ref|YP_008429896.1| - 7.8e-37 126.8 0.1 1.2e-36 126.2 0.1 1.3 1 0 0 1 1 1 1 Putative GTP-binding controlling metal-binding Isochorismatase PF00857.20 gi|530549346|ref|YP_008429896.1| - 0.13 12.5 0.1 7.6 6.7 0.0 2.5 2 1 0 2 2 2 0 Isochorismatase family Glyco_transf_4 PF13439.6 gi|530549347|ref|YP_008429897.1| - 7e-31 107.5 0.1 1.1e-30 106.9 0.1 1.2 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glycos_transf_1 PF00534.20 gi|530549347|ref|YP_008429897.1| - 1.9e-29 102.4 0.0 6.5e-29 100.7 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|530549347|ref|YP_008429897.1| - 1.8e-25 89.9 0.0 5.8e-25 88.3 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|530549347|ref|YP_008429897.1| - 7.6e-18 65.5 0.0 1.1e-17 64.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.6 gi|530549347|ref|YP_008429897.1| - 4.8e-15 55.8 0.1 9.7e-15 54.8 0.1 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.6 gi|530549347|ref|YP_008429897.1| - 8.9e-09 35.6 0.0 2.3e-08 34.3 0.0 1.6 2 0 0 2 2 2 1 Glycosyl transferases group 1 DUF3492 PF11997.8 gi|530549347|ref|YP_008429897.1| - 0.00055 19.8 1.4 0.05 13.3 0.3 2.7 3 0 0 3 3 3 1 Domain of unknown function (DUF3492) Glyco_transf_5 PF08323.11 gi|530549347|ref|YP_008429897.1| - 0.04 13.6 0.0 0.26 11.0 0.0 1.8 1 1 0 2 2 2 0 Starch synthase catalytic domain CW_binding_2 PF04122.12 gi|530549348|ref|YP_008429898.1| - 2.3e-08 34.6 3.1 0.0051 17.4 0.0 3.4 4 0 0 4 4 4 2 Putative cell wall binding repeat 2 DUF4398 PF14346.6 gi|530549348|ref|YP_008429898.1| - 0.013 16.1 0.4 0.013 16.1 0.4 3.2 3 1 1 4 4 4 0 Domain of unknown function (DUF4398) HEPN PF05168.14 gi|530549348|ref|YP_008429898.1| - 0.02 15.0 5.1 4.7 7.4 3.9 3.9 3 1 0 3 3 3 0 HEPN domain DUF2524 PF10732.9 gi|530549348|ref|YP_008429898.1| - 0.029 14.7 2.8 0.31 11.4 0.2 2.6 1 1 1 2 2 2 0 Protein of unknown function (DUF2524) YfdX PF10938.8 gi|530549348|ref|YP_008429898.1| - 0.039 13.9 12.2 0.12 12.3 12.2 1.9 1 1 0 1 1 1 0 YfdX protein DUF4363 PF14276.6 gi|530549348|ref|YP_008429898.1| - 0.05 13.7 0.6 0.05 13.7 0.6 2.8 3 1 0 3 3 3 0 Domain of unknown function (DUF4363) CbiG_N PF11760.8 gi|530549348|ref|YP_008429898.1| - 0.13 12.3 1.1 0.36 10.9 0.2 2.2 2 0 0 2 2 2 0 Cobalamin synthesis G N-terminal SBP_bac_5 PF00496.22 gi|530549348|ref|YP_008429898.1| - 0.54 9.2 4.8 1.1 8.2 4.7 1.5 1 1 0 1 1 1 0 Bacterial extracellular solute-binding proteins, family 5 Middle UDPG_MGDP_dh_C PF03720.15 gi|530549348|ref|YP_008429898.1| - 5.8 7.4 7.1 6.3 7.3 0.1 3.2 3 1 0 3 3 3 0 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain PTS_IIA PF02255.16 gi|530549348|ref|YP_008429898.1| - 5.9 7.0 7.8 1.6 8.9 0.6 2.9 2 1 0 2 2 2 0 PTS system, Lactose/Cellobiose specific IIA subunit Asn_synthase PF00733.21 gi|530549349|ref|YP_008429899.1| - 7.6e-57 193.6 0.1 9.7e-36 124.1 0.0 2.1 1 1 1 2 2 2 2 Asparagine synthase GATase_7 PF13537.6 gi|530549349|ref|YP_008429899.1| - 8.1e-27 93.6 0.0 1.4e-26 92.8 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_6 PF13522.6 gi|530549349|ref|YP_008429899.1| - 9e-21 74.5 0.0 1.8e-20 73.5 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain NAD_synthase PF02540.17 gi|530549349|ref|YP_008429899.1| - 0.00013 21.2 0.0 0.00023 20.4 0.0 1.3 1 0 0 1 1 1 1 NAD synthase QueC PF06508.13 gi|530549349|ref|YP_008429899.1| - 0.011 15.3 0.0 0.018 14.6 0.0 1.3 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC ATP_bind_1 PF03029.17 gi|530549350|ref|YP_008429900.1| - 2.2e-59 201.2 0.0 2.5e-59 201.0 0.0 1.0 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein SRP54 PF00448.22 gi|530549350|ref|YP_008429900.1| - 1.1e-06 28.4 0.3 0.00035 20.2 0.2 2.7 3 0 0 3 3 3 1 SRP54-type protein, GTPase domain GTP_EFTU PF00009.27 gi|530549350|ref|YP_008429900.1| - 7.3e-06 25.7 0.1 0.095 12.2 0.0 2.7 2 1 0 2 2 2 2 Elongation factor Tu GTP binding domain AAA_24 PF13479.6 gi|530549350|ref|YP_008429900.1| - 1.7e-05 24.7 0.1 2.5e-05 24.1 0.1 1.2 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|530549350|ref|YP_008429900.1| - 1.7e-05 24.9 0.0 2.2e-05 24.5 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|530549350|ref|YP_008429900.1| - 4.6e-05 23.4 0.4 0.016 15.1 0.4 2.2 1 1 0 1 1 1 1 AAA domain cobW PF02492.19 gi|530549350|ref|YP_008429900.1| - 8.2e-05 22.3 0.3 0.31 10.6 0.1 2.4 2 1 0 2 2 2 2 CobW/HypB/UreG, nucleotide-binding domain RsgA_GTPase PF03193.16 gi|530549350|ref|YP_008429900.1| - 0.00095 19.1 0.0 3.2 7.6 0.1 3.3 4 0 0 4 4 3 1 RsgA GTPase AAA_16 PF13191.6 gi|530549350|ref|YP_008429900.1| - 0.0018 18.7 0.0 0.0034 17.8 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain MipZ PF09140.11 gi|530549350|ref|YP_008429900.1| - 0.0021 17.4 0.0 0.0045 16.3 0.0 1.6 1 1 0 1 1 1 1 ATPase MipZ AAA_18 PF13238.6 gi|530549350|ref|YP_008429900.1| - 0.0048 17.4 0.0 0.0083 16.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_14 PF13173.6 gi|530549350|ref|YP_008429900.1| - 0.0055 16.7 0.9 0.034 14.2 0.9 2.1 1 1 0 1 1 1 1 AAA domain MeaB PF03308.16 gi|530549350|ref|YP_008429900.1| - 0.0097 14.9 0.0 0.032 13.2 0.1 1.7 2 0 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB NTPase_1 PF03266.15 gi|530549350|ref|YP_008429900.1| - 0.011 15.6 1.5 0.093 12.6 1.5 2.1 1 1 0 1 1 1 0 NTPase KTI12 PF08433.10 gi|530549350|ref|YP_008429900.1| - 0.017 14.5 0.0 0.024 14.1 0.0 1.2 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA_30 PF13604.6 gi|530549350|ref|YP_008429900.1| - 0.024 14.4 0.0 0.028 14.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain MobB PF03205.14 gi|530549350|ref|YP_008429900.1| - 0.026 14.4 0.2 0.05 13.5 0.2 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_22 PF13401.6 gi|530549350|ref|YP_008429900.1| - 0.027 14.7 0.1 0.06 13.6 0.1 1.6 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|530549350|ref|YP_008429900.1| - 0.028 14.7 0.3 0.096 12.9 0.3 1.9 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|530549350|ref|YP_008429900.1| - 0.04 14.1 0.2 0.061 13.5 0.2 1.4 1 1 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 gi|530549350|ref|YP_008429900.1| - 0.052 13.4 0.3 0.1 12.5 0.3 1.5 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea MMR_HSR1 PF01926.23 gi|530549350|ref|YP_008429900.1| - 0.057 13.5 0.2 0.91 9.6 0.2 2.2 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_7 PF12775.7 gi|530549350|ref|YP_008429900.1| - 0.067 12.7 0.1 0.1 12.1 0.1 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region IstB_IS21 PF01695.17 gi|530549350|ref|YP_008429900.1| - 0.067 12.9 0.0 0.21 11.3 0.0 1.8 1 1 1 2 2 2 0 IstB-like ATP binding protein CLP1_P PF16575.5 gi|530549350|ref|YP_008429900.1| - 0.072 12.9 0.0 0.7 9.7 0.0 2.1 1 1 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop PduV-EutP PF10662.9 gi|530549350|ref|YP_008429900.1| - 0.078 12.7 0.1 0.64 9.8 0.0 2.3 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation AAA_5 PF07728.14 gi|530549350|ref|YP_008429900.1| - 0.11 12.5 0.0 0.16 12.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) T2SSE PF00437.20 gi|530549350|ref|YP_008429900.1| - 0.11 11.5 0.1 0.15 11.1 0.1 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_15 PF13175.6 gi|530549350|ref|YP_008429900.1| - 0.13 11.9 0.0 0.13 11.9 0.0 1.1 1 0 0 1 1 1 0 AAA ATPase domain AAA_31 PF13614.6 gi|530549351|ref|YP_008429901.1| - 9.8e-26 90.7 0.0 1.5e-25 90.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain ParA PF10609.9 gi|530549351|ref|YP_008429901.1| - 1.1e-25 90.5 1.0 8.8e-25 87.6 1.0 2.2 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|530549351|ref|YP_008429901.1| - 5.1e-24 84.7 0.0 7.2e-24 84.3 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain CBP_BcsQ PF06564.12 gi|530549351|ref|YP_008429901.1| - 3.5e-17 62.7 0.0 4.9e-16 58.9 0.0 2.0 1 1 0 1 1 1 1 Cellulose biosynthesis protein BcsQ Fer4_NifH PF00142.18 gi|530549351|ref|YP_008429901.1| - 2.7e-13 50.0 0.1 9.6e-07 28.5 0.0 2.1 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family MipZ PF09140.11 gi|530549351|ref|YP_008429901.1| - 6.5e-10 38.7 0.1 1.5e-09 37.6 0.1 1.6 1 1 0 1 1 1 1 ATPase MipZ ArsA_ATPase PF02374.15 gi|530549351|ref|YP_008429901.1| - 4.5e-07 29.4 0.2 6.9e-05 22.2 0.3 2.2 2 0 0 2 2 2 1 Anion-transporting ATPase AAA_26 PF13500.6 gi|530549351|ref|YP_008429901.1| - 1.7e-06 28.0 1.7 3.1e-05 23.9 0.0 2.5 2 1 0 2 2 2 1 AAA domain AAA_30 PF13604.6 gi|530549351|ref|YP_008429901.1| - 8e-06 25.7 0.1 0.00011 22.0 0.0 2.1 2 0 0 2 2 2 1 AAA domain APS_kinase PF01583.20 gi|530549351|ref|YP_008429901.1| - 0.0024 17.8 0.3 0.0055 16.6 0.2 1.5 1 1 1 2 2 2 1 Adenylylsulphate kinase SRP54 PF00448.22 gi|530549351|ref|YP_008429901.1| - 0.025 14.2 2.0 0.065 12.9 0.9 2.0 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain VirC1 PF07015.11 gi|530549351|ref|YP_008429901.1| - 0.033 13.5 0.5 0.064 12.5 0.5 1.4 1 0 0 1 1 1 0 VirC1 protein CLP1_P PF16575.5 gi|530549351|ref|YP_008429901.1| - 0.042 13.7 0.1 0.063 13.1 0.1 1.2 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop AAA_25 PF13481.6 gi|530549351|ref|YP_008429901.1| - 0.057 13.0 1.3 0.093 12.3 1.3 1.6 1 1 0 1 1 1 0 AAA domain ATP_bind_1 PF03029.17 gi|530549351|ref|YP_008429901.1| - 0.093 12.5 0.5 1.4 8.6 0.5 2.1 1 1 0 1 1 1 0 Conserved hypothetical ATP binding protein KH_7 PF17214.3 gi|530549351|ref|YP_008429901.1| - 0.13 12.2 0.1 0.32 11.0 0.1 1.6 1 0 0 1 1 1 0 KH domain Intein_splicing PF14890.6 gi|530549352|ref|YP_008429902.1| - 5e-20 71.8 1.4 9.2e-20 71.0 0.2 2.0 2 0 0 2 2 2 1 Intein splicing domain LAGLIDADG_3 PF14528.6 gi|530549352|ref|YP_008429902.1| - 2.8e-13 50.0 1.9 2.3e-12 47.0 0.8 3.1 3 0 0 3 3 3 1 LAGLIDADG-like domain LAGLIDADG_WhiA PF14527.6 gi|530549352|ref|YP_008429902.1| - 1.3e-07 31.5 1.1 2.2e-06 27.6 0.2 3.2 3 0 0 3 3 3 1 WhiA LAGLIDADG-like domain Vint PF14623.6 gi|530549352|ref|YP_008429902.1| - 8.1e-06 25.7 0.0 1.9e-05 24.5 0.0 1.6 1 0 0 1 1 1 1 Hint-domain PIN_9 PF18477.1 gi|530549352|ref|YP_008429902.1| - 2.6e-05 24.5 2.2 0.0092 16.3 2.2 2.8 1 1 0 1 1 1 1 PIN like domain Hint PF01079.20 gi|530549352|ref|YP_008429902.1| - 5.7e-05 22.7 0.0 0.00011 21.8 0.0 1.4 1 0 0 1 1 1 1 Hint module KH_1 PF00013.29 gi|530549352|ref|YP_008429902.1| - 7.2e-05 22.5 0.2 0.00025 20.8 0.2 1.9 1 0 0 1 1 1 1 KH domain PIN_4 PF13638.6 gi|530549352|ref|YP_008429902.1| - 0.00045 20.5 0.1 0.0014 18.9 0.1 1.9 1 0 0 1 1 1 1 PIN domain KH_2 PF07650.17 gi|530549352|ref|YP_008429902.1| - 0.0009 19.0 6.2 0.0026 17.5 0.4 3.4 2 1 0 2 2 2 1 KH domain KH_5 PF13184.6 gi|530549352|ref|YP_008429902.1| - 0.044 13.9 0.2 0.044 13.9 0.2 2.6 3 0 0 3 3 3 0 NusA-like KH domain Maf PF02545.14 gi|530549353|ref|YP_008429903.1| - 6.6e-59 198.5 0.0 7.8e-59 198.2 0.0 1.0 1 0 0 1 1 1 1 Maf-like protein DAPG_hydrolase PF18089.1 gi|530549353|ref|YP_008429903.1| - 0.079 12.5 0.0 0.12 11.9 0.0 1.2 1 0 0 1 1 1 0 DAPG hydrolase PhiG domain DUF553 PF04473.12 gi|530549354|ref|YP_008429904.1| - 3.3e-47 159.8 5.5 3.3e-47 159.8 5.5 2.2 2 0 0 2 2 2 1 Transglutaminase-like domain Binary_toxB PF03495.14 gi|530549354|ref|YP_008429904.1| - 0.0015 18.7 22.9 0.029 14.6 2.0 5.6 1 1 5 6 6 6 4 Clostridial binary toxin B/anthrax toxin PA Ca-binding domain DUF5031 PF16434.5 gi|530549354|ref|YP_008429904.1| - 0.0037 16.5 0.0 0.03 13.5 0.0 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF5031) Transglut_core PF01841.19 gi|530549354|ref|YP_008429904.1| - 0.035 14.5 0.0 0.53 10.8 0.0 2.2 1 1 0 1 1 1 0 Transglutaminase-like superfamily DUF5365 PF17326.2 gi|530549354|ref|YP_008429904.1| - 0.087 13.2 1.0 1.9 8.9 0.2 2.7 2 0 0 2 2 2 0 Family of unknown function (DUF5365) Cauli_VI PF01693.16 gi|530549354|ref|YP_008429904.1| - 0.1 12.9 0.1 0.24 11.8 0.1 1.6 1 0 0 1 1 1 0 Caulimovirus viroplasmin PHP PF02811.19 gi|530549355|ref|YP_008429905.1| - 1.5e-12 48.1 0.3 3.2e-12 47.1 0.3 1.5 1 1 0 1 1 1 1 PHP domain PHP_C PF13263.6 gi|530549355|ref|YP_008429905.1| - 0.0038 16.9 0.0 0.014 15.1 0.0 2.0 2 0 0 2 2 2 1 PHP-associated B12-binding PF02310.19 gi|530549356|ref|YP_008429906.1| - 8.6e-25 87.1 0.2 1.1e-24 86.8 0.2 1.1 1 0 0 1 1 1 1 B12 binding domain Nitro_FeMo-Co PF02579.17 gi|530549356|ref|YP_008429906.1| - 0.035 14.4 0.1 11 6.5 0.0 2.8 2 2 0 2 2 2 0 Dinitrogenase iron-molybdenum cofactor MoCF_biosynth PF00994.24 gi|530549356|ref|YP_008429906.1| - 0.056 13.1 0.1 0.18 11.5 0.0 1.8 2 1 0 2 2 2 0 Probable molybdopterin binding domain TPP_enzyme_N PF02776.18 gi|530549356|ref|YP_008429906.1| - 0.13 11.9 0.0 5.4 6.6 0.0 2.1 2 0 0 2 2 2 0 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain MeaB PF03308.16 gi|530549357|ref|YP_008429907.1| - 1.8e-102 341.9 2.4 2.3e-102 341.6 2.4 1.0 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB cobW PF02492.19 gi|530549357|ref|YP_008429907.1| - 9.9e-08 31.8 3.0 8.4e-07 28.7 3.0 2.3 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain GTP_EFTU PF00009.27 gi|530549357|ref|YP_008429907.1| - 3.9e-06 26.6 0.1 2.6e-05 23.9 0.1 2.1 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain NTPase_1 PF03266.15 gi|530549357|ref|YP_008429907.1| - 1.3e-05 25.2 0.4 4.5e-05 23.4 0.1 2.1 2 0 0 2 2 1 1 NTPase ATP_bind_1 PF03029.17 gi|530549357|ref|YP_008429907.1| - 1.8e-05 24.6 0.1 0.00026 20.8 0.0 2.2 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein SRP54 PF00448.22 gi|530549357|ref|YP_008429907.1| - 3.9e-05 23.4 0.3 0.0002 21.0 0.3 2.1 1 1 0 1 1 1 1 SRP54-type protein, GTPase domain ABC_tran PF00005.27 gi|530549357|ref|YP_008429907.1| - 0.00028 21.4 0.1 0.00057 20.4 0.1 1.5 1 0 0 1 1 1 1 ABC transporter AAA_22 PF13401.6 gi|530549357|ref|YP_008429907.1| - 0.00037 20.8 0.0 0.00079 19.7 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|530549357|ref|YP_008429907.1| - 0.00053 20.4 0.0 0.0012 19.2 0.0 1.6 1 0 0 1 1 1 1 AAA ATPase domain AAA_18 PF13238.6 gi|530549357|ref|YP_008429907.1| - 0.00054 20.5 0.1 0.0027 18.3 0.1 2.2 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.6 gi|530549357|ref|YP_008429907.1| - 0.00061 19.5 0.0 0.0012 18.6 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain KAP_NTPase PF07693.14 gi|530549357|ref|YP_008429907.1| - 0.0016 17.7 0.0 0.0017 17.7 0.0 1.2 1 1 0 1 1 1 1 KAP family P-loop domain AAA_30 PF13604.6 gi|530549357|ref|YP_008429907.1| - 0.0019 17.9 0.0 0.0046 16.7 0.0 1.6 1 0 0 1 1 1 1 AAA domain MobB PF03205.14 gi|530549357|ref|YP_008429907.1| - 0.0028 17.5 0.1 0.01 15.8 0.0 1.9 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B MMR_HSR1 PF01926.23 gi|530549357|ref|YP_008429907.1| - 0.0031 17.6 0.7 0.02 15.0 0.7 2.3 1 1 0 1 1 1 1 50S ribosome-binding GTPase ATPase_2 PF01637.18 gi|530549357|ref|YP_008429907.1| - 0.0032 17.4 0.7 0.0084 16.1 0.1 1.9 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea AAA_19 PF13245.6 gi|530549357|ref|YP_008429907.1| - 0.0046 17.3 0.1 0.079 13.3 0.1 2.4 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.6 gi|530549357|ref|YP_008429907.1| - 0.0055 16.9 0.0 0.013 15.6 0.0 1.6 1 0 0 1 1 1 1 AAA domain NB-ARC PF00931.22 gi|530549357|ref|YP_008429907.1| - 0.0072 15.5 0.0 0.013 14.7 0.0 1.4 1 0 0 1 1 1 1 NB-ARC domain RecA PF00154.21 gi|530549357|ref|YP_008429907.1| - 0.0084 15.6 0.2 2.4 7.6 0.0 2.4 2 0 0 2 2 2 1 recA bacterial DNA recombination protein RsgA_GTPase PF03193.16 gi|530549357|ref|YP_008429907.1| - 0.0087 16.0 0.0 0.12 12.3 0.0 2.4 3 0 0 3 3 2 1 RsgA GTPase TrwB_AAD_bind PF10412.9 gi|530549357|ref|YP_008429907.1| - 0.01 14.8 0.2 0.03 13.2 0.0 1.7 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain KTI12 PF08433.10 gi|530549357|ref|YP_008429907.1| - 0.011 15.3 0.1 0.037 13.5 0.0 1.8 2 0 0 2 2 2 0 Chromatin associated protein KTI12 NACHT PF05729.12 gi|530549357|ref|YP_008429907.1| - 0.011 15.7 0.0 0.025 14.5 0.0 1.6 1 0 0 1 1 1 0 NACHT domain AAA_17 PF13207.6 gi|530549357|ref|YP_008429907.1| - 0.012 16.0 1.4 0.05 14.0 0.1 2.5 2 0 0 2 2 2 0 AAA domain RNA12 PF10443.9 gi|530549357|ref|YP_008429907.1| - 0.016 13.9 0.0 0.031 13.0 0.0 1.4 1 0 0 1 1 1 0 RNA12 protein DUF87 PF01935.17 gi|530549357|ref|YP_008429907.1| - 0.017 15.2 0.7 0.048 13.7 0.1 1.9 2 0 0 2 2 2 0 Helicase HerA, central domain AAA_14 PF13173.6 gi|530549357|ref|YP_008429907.1| - 0.018 15.1 0.0 0.039 14.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|530549357|ref|YP_008429907.1| - 0.023 15.1 0.0 0.056 13.8 0.0 1.6 1 0 0 1 1 1 0 RNA helicase AAA_24 PF13479.6 gi|530549357|ref|YP_008429907.1| - 0.03 14.1 0.2 0.24 11.1 0.1 2.4 3 0 0 3 3 3 0 AAA domain Zeta_toxin PF06414.12 gi|530549357|ref|YP_008429907.1| - 0.034 13.4 0.1 0.064 12.5 0.1 1.4 1 0 0 1 1 1 0 Zeta toxin PIF1 PF05970.14 gi|530549357|ref|YP_008429907.1| - 0.047 12.9 0.0 0.077 12.2 0.0 1.3 1 0 0 1 1 1 0 PIF1-like helicase AAA PF00004.29 gi|530549357|ref|YP_008429907.1| - 0.05 14.0 0.2 0.17 12.3 0.0 2.1 2 1 1 3 3 1 0 ATPase family associated with various cellular activities (AAA) AAA_23 PF13476.6 gi|530549357|ref|YP_008429907.1| - 0.072 13.6 1.0 0.25 11.8 0.1 2.1 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.6 gi|530549357|ref|YP_008429907.1| - 0.099 12.9 0.1 0.21 11.9 0.1 1.5 1 0 0 1 1 1 0 AAA domain T2SSE PF00437.20 gi|530549357|ref|YP_008429907.1| - 0.1 11.7 0.1 0.21 10.6 0.0 1.5 2 0 0 2 2 2 0 Type II/IV secretion system protein AAA_5 PF07728.14 gi|530549357|ref|YP_008429907.1| - 0.12 12.3 0.0 0.26 11.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) Viral_helicase1 PF01443.18 gi|530549357|ref|YP_008429907.1| - 0.14 11.9 0.1 0.26 11.0 0.1 1.4 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_11 PF13086.6 gi|530549357|ref|YP_008429907.1| - 0.15 11.8 0.2 0.43 10.3 0.0 1.8 2 1 0 2 2 2 0 AAA domain Glyoxalase_4 PF13669.6 gi|530549358|ref|YP_008429908.1| - 1.2e-25 89.9 0.0 1.4e-25 89.7 0.0 1.0 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase PF00903.25 gi|530549358|ref|YP_008429908.1| - 4.9e-15 55.8 0.0 5.4e-15 55.7 0.0 1.0 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.6 gi|530549358|ref|YP_008429908.1| - 4.3e-10 40.0 0.0 4.6e-10 39.9 0.0 1.0 1 0 0 1 1 1 1 Glyoxalase-like domain Osmo_CC PF08946.10 gi|530549358|ref|YP_008429908.1| - 0.07 13.4 0.3 0.07 13.4 0.3 2.8 2 2 1 3 3 3 0 Osmosensory transporter coiled coil Peptidase_S66 PF02016.15 gi|530549358|ref|YP_008429908.1| - 0.094 12.8 0.1 0.44 10.7 0.0 1.8 1 1 1 2 2 2 0 LD-carboxypeptidase N-terminal domain DUF1338 PF07063.13 gi|530549358|ref|YP_008429908.1| - 0.18 11.0 0.0 0.46 9.6 0.0 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF1338) Rpr2 PF04032.16 gi|530549359|ref|YP_008429909.1| - 3.2e-18 65.8 0.2 3.2e-18 65.8 0.2 1.6 2 0 0 2 2 2 1 RNAse P Rpr2/Rpp21/SNM1 subunit domain NMD3 PF04981.13 gi|530549359|ref|YP_008429909.1| - 0.0086 15.6 2.6 0.012 15.1 2.6 1.5 1 1 0 1 1 1 1 NMD3 family DUF4674 PF15719.5 gi|530549359|ref|YP_008429909.1| - 5.5 7.0 9.3 0.73 9.8 0.7 2.5 2 1 1 3 3 3 0 Domain of unknown function (DUF4674) tRNA-synt_2b PF00587.25 gi|530549360|ref|YP_008429910.1| - 1.1e-38 133.0 0.0 1.8e-38 132.3 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) Seryl_tRNA_N PF02403.22 gi|530549360|ref|YP_008429910.1| - 1.4e-26 92.9 8.1 2.4e-26 92.0 8.1 1.4 1 0 0 1 1 1 1 Seryl-tRNA synthetase N-terminal domain CENP-F_leu_zip PF10473.9 gi|530549360|ref|YP_008429910.1| - 0.032 14.2 4.7 0.077 13.0 4.7 1.6 1 0 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF3450 PF11932.8 gi|530549360|ref|YP_008429910.1| - 0.13 11.5 0.4 0.22 10.8 0.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3450) DUF4164 PF13747.6 gi|530549360|ref|YP_008429910.1| - 0.73 10.2 5.9 2.3 8.6 5.9 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4164) TSP_NTD PF17804.1 gi|530549360|ref|YP_008429910.1| - 0.98 9.6 6.8 0.26 11.5 3.6 1.6 2 0 0 2 2 2 0 Tail specific protease N-terminal domain MoeA_N PF03453.17 gi|530549361|ref|YP_008429911.1| - 5.3e-45 153.0 0.4 4.4e-44 150.0 0.1 2.0 2 0 0 2 2 2 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|530549361|ref|YP_008429911.1| - 2.3e-26 92.2 0.1 4e-26 91.4 0.1 1.4 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.15 gi|530549361|ref|YP_008429911.1| - 5.2e-19 68.2 0.0 2.1e-18 66.2 0.0 2.1 2 0 0 2 2 2 1 MoeA C-terminal region (domain IV) MutL PF13941.6 gi|530549361|ref|YP_008429911.1| - 0.16 10.5 0.6 0.63 8.6 0.1 1.9 2 0 0 2 2 2 0 MutL protein RuvX PF03652.15 gi|530549364|ref|YP_008429914.1| - 0.054 13.9 0.0 0.11 12.9 0.0 1.5 1 0 0 1 1 1 0 Holliday junction resolvase AAA PF00004.29 gi|530549365|ref|YP_008429915.1| - 6.6e-102 337.2 0.1 2.4e-51 173.6 0.0 3.0 3 0 0 3 3 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.18 gi|530549365|ref|YP_008429915.1| - 2.7e-33 114.0 0.1 6.8e-32 109.5 0.7 3.0 3 0 0 3 3 3 1 Cell division protein 48 (CDC48), N-terminal domain AAA_lid_3 PF17862.1 gi|530549365|ref|YP_008429915.1| - 6.2e-32 109.1 1.6 1.6e-16 59.8 0.5 3.0 2 0 0 2 2 2 2 AAA+ lid domain RuvB_N PF05496.12 gi|530549365|ref|YP_008429915.1| - 1.9e-16 60.2 0.0 6.8e-08 32.4 0.0 3.1 3 1 0 3 3 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_2 PF07724.14 gi|530549365|ref|YP_008429915.1| - 3.3e-16 59.9 0.0 1.1e-08 35.3 0.0 2.7 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_16 PF13191.6 gi|530549365|ref|YP_008429915.1| - 1.2e-15 58.4 0.6 2.7e-06 27.9 0.0 4.4 3 2 1 4 4 3 2 AAA ATPase domain CDC48_2 PF02933.17 gi|530549365|ref|YP_008429915.1| - 1.6e-13 50.2 0.1 4.8e-13 48.7 0.1 1.8 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), domain 2 AAA_22 PF13401.6 gi|530549365|ref|YP_008429915.1| - 1.3e-12 48.1 1.8 0.00028 21.2 0.0 4.7 3 2 0 3 3 2 2 AAA domain AAA_5 PF07728.14 gi|530549365|ref|YP_008429915.1| - 5.2e-12 45.9 2.1 0.0001 22.3 0.1 4.3 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) TIP49 PF06068.13 gi|530549365|ref|YP_008429915.1| - 1.8e-11 43.8 0.1 0.00029 20.2 0.0 3.5 3 0 0 3 3 3 2 TIP49 P-loop domain AAA_14 PF13173.6 gi|530549365|ref|YP_008429915.1| - 7.9e-11 42.1 0.0 5.7e-05 23.2 0.0 2.7 2 0 0 2 2 2 2 AAA domain AAA_33 PF13671.6 gi|530549365|ref|YP_008429915.1| - 2e-10 41.0 0.0 0.00041 20.5 0.0 2.7 2 0 0 2 2 2 2 AAA domain AAA_18 PF13238.6 gi|530549365|ref|YP_008429915.1| - 9.8e-09 35.8 0.1 0.012 16.1 0.0 3.5 3 1 0 3 3 2 2 AAA domain RNA_helicase PF00910.22 gi|530549365|ref|YP_008429915.1| - 3.6e-08 33.8 0.0 0.011 16.1 0.0 2.7 2 0 0 2 2 2 2 RNA helicase AAA_24 PF13479.6 gi|530549365|ref|YP_008429915.1| - 4.7e-08 33.0 0.0 0.0089 15.8 0.0 2.7 2 0 0 2 2 2 2 AAA domain IstB_IS21 PF01695.17 gi|530549365|ref|YP_008429915.1| - 5.8e-08 32.7 0.0 0.0083 15.9 0.0 2.5 2 0 0 2 2 2 2 IstB-like ATP binding protein Sigma54_activat PF00158.26 gi|530549365|ref|YP_008429915.1| - 6.4e-08 32.5 0.1 0.036 13.8 0.0 4.0 3 1 0 3 3 3 2 Sigma-54 interaction domain Vps4_C PF09336.10 gi|530549365|ref|YP_008429915.1| - 1.9e-07 31.0 1.3 0.0031 17.5 0.1 3.3 3 0 0 3 3 3 2 Vps4 C terminal oligomerisation domain Bac_DnaA PF00308.18 gi|530549365|ref|YP_008429915.1| - 3.8e-07 30.2 0.0 0.014 15.3 0.0 3.3 4 0 0 4 4 2 2 Bacterial dnaA protein AAA_28 PF13521.6 gi|530549365|ref|YP_008429915.1| - 6.1e-07 29.8 0.3 0.025 14.8 0.0 2.9 3 0 0 3 3 2 2 AAA domain Mg_chelatase PF01078.21 gi|530549365|ref|YP_008429915.1| - 6.5e-07 28.9 0.3 0.038 13.4 0.0 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI DUF815 PF05673.13 gi|530549365|ref|YP_008429915.1| - 1.5e-06 27.5 0.0 0.044 12.9 0.0 2.5 2 0 0 2 2 2 2 Protein of unknown function (DUF815) AAA_25 PF13481.6 gi|530549365|ref|YP_008429915.1| - 2.7e-06 27.1 5.6 0.14 11.8 1.3 4.3 3 1 0 3 3 3 2 AAA domain AAA_7 PF12775.7 gi|530549365|ref|YP_008429915.1| - 6.6e-06 25.8 0.0 0.096 12.2 0.0 2.7 3 0 0 3 3 2 2 P-loop containing dynein motor region TsaE PF02367.17 gi|530549365|ref|YP_008429915.1| - 1.2e-05 25.3 0.0 0.14 12.1 0.0 2.7 2 1 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE NACHT PF05729.12 gi|530549365|ref|YP_008429915.1| - 1.4e-05 25.1 0.3 1 9.2 0.0 4.5 4 1 0 4 4 4 2 NACHT domain ATPase_2 PF01637.18 gi|530549365|ref|YP_008429915.1| - 1.6e-05 24.9 8.1 0.0048 16.8 0.0 4.4 4 1 1 5 5 5 2 ATPase domain predominantly from Archaea ATPase PF06745.13 gi|530549365|ref|YP_008429915.1| - 2.4e-05 23.8 5.6 0.31 10.4 0.1 4.8 4 1 0 4 4 4 2 KaiC ABC_tran PF00005.27 gi|530549365|ref|YP_008429915.1| - 2.6e-05 24.8 0.0 0.59 10.6 0.0 3.1 3 0 0 3 3 2 2 ABC transporter Zeta_toxin PF06414.12 gi|530549365|ref|YP_008429915.1| - 3.6e-05 23.1 0.2 0.32 10.2 0.0 2.9 3 0 0 3 3 2 2 Zeta toxin DUF2075 PF09848.9 gi|530549365|ref|YP_008429915.1| - 5.1e-05 22.7 0.0 0.073 12.3 0.0 2.4 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) Parvo_NS1 PF01057.17 gi|530549365|ref|YP_008429915.1| - 6.8e-05 22.1 0.1 0.36 9.9 0.0 2.3 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 AAA_3 PF07726.11 gi|530549365|ref|YP_008429915.1| - 8.6e-05 22.4 0.0 0.55 10.1 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) PhoH PF02562.16 gi|530549365|ref|YP_008429915.1| - 0.0001 21.9 0.4 0.37 10.2 0.0 2.6 2 0 0 2 2 2 2 PhoH-like protein NB-ARC PF00931.22 gi|530549365|ref|YP_008429915.1| - 0.00018 20.8 0.0 0.82 8.8 0.0 2.9 2 0 0 2 2 2 2 NB-ARC domain AAA_30 PF13604.6 gi|530549365|ref|YP_008429915.1| - 0.0003 20.6 0.3 1.3 8.7 0.0 2.9 2 1 0 2 2 2 2 AAA domain AAA_11 PF13086.6 gi|530549365|ref|YP_008429915.1| - 0.00046 20.1 2.7 0.72 9.6 0.3 3.3 3 1 0 3 3 3 2 AAA domain NTPase_1 PF03266.15 gi|530549365|ref|YP_008429915.1| - 0.00084 19.3 1.5 3.9 7.3 0.0 4.5 3 2 2 5 5 4 0 NTPase AAA_19 PF13245.6 gi|530549365|ref|YP_008429915.1| - 0.0029 17.9 3.0 3.2 8.1 0.1 3.2 2 2 1 4 4 3 0 AAA domain Sigma54_activ_2 PF14532.6 gi|530549365|ref|YP_008429915.1| - 0.0063 16.6 0.0 6.5 6.9 0.0 2.7 2 0 0 2 2 2 0 Sigma-54 interaction domain SKI PF01202.22 gi|530549365|ref|YP_008429915.1| - 0.0089 16.2 1.0 9.1 6.4 0.0 4.2 5 0 0 5 5 4 0 Shikimate kinase Cytidylate_kin PF02224.18 gi|530549365|ref|YP_008429915.1| - 0.0092 15.7 0.2 6.1 6.5 0.0 3.2 3 0 0 3 3 3 0 Cytidylate kinase AFG1_ATPase PF03969.16 gi|530549365|ref|YP_008429915.1| - 0.01 14.7 0.0 5.5 5.8 0.0 2.7 2 0 0 2 2 2 0 AFG1-like ATPase Viral_helicase1 PF01443.18 gi|530549365|ref|YP_008429915.1| - 0.014 15.1 0.0 0.63 9.7 0.0 2.4 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase AAA_17 PF13207.6 gi|530549365|ref|YP_008429915.1| - 0.015 15.8 6.3 3.2 8.2 0.0 4.5 4 1 0 4 4 3 0 AAA domain T2SSE PF00437.20 gi|530549365|ref|YP_008429915.1| - 0.019 14.0 0.0 5.4 6.0 0.0 2.6 2 1 0 2 2 2 0 Type II/IV secretion system protein TniB PF05621.11 gi|530549365|ref|YP_008429915.1| - 0.019 14.4 0.1 16 4.9 0.0 3.7 3 1 1 4 4 4 0 Bacterial TniB protein IPT PF01745.16 gi|530549365|ref|YP_008429915.1| - 0.034 13.5 0.5 15 4.9 0.0 3.5 3 0 0 3 3 3 0 Isopentenyl transferase Zot PF05707.12 gi|530549365|ref|YP_008429915.1| - 0.038 13.6 0.0 1.5 8.4 0.0 2.7 2 1 0 2 2 2 0 Zonular occludens toxin (Zot) ResIII PF04851.15 gi|530549365|ref|YP_008429915.1| - 0.039 14.0 0.0 11 5.9 0.0 3.0 3 1 0 3 3 2 0 Type III restriction enzyme, res subunit FAA_hydrolase_N PF09298.11 gi|530549365|ref|YP_008429915.1| - 0.11 12.7 0.7 0.71 10.1 0.1 2.4 2 0 0 2 2 2 0 Fumarylacetoacetase N-terminal PduV-EutP PF10662.9 gi|530549365|ref|YP_008429915.1| - 0.13 12.1 0.0 22 4.8 0.0 2.6 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation AAA_29 PF13555.6 gi|530549365|ref|YP_008429915.1| - 0.14 11.9 0.0 26 4.6 0.0 2.4 2 0 0 2 2 2 0 P-loop containing region of AAA domain cobW PF02492.19 gi|530549365|ref|YP_008429915.1| - 0.14 11.7 0.0 16 5.0 0.0 2.6 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain DUF1905 PF08922.11 gi|530549365|ref|YP_008429915.1| - 0.16 12.1 0.2 31 4.7 0.0 3.0 3 0 0 3 3 2 0 Domain of unknown function (DUF1905) Ins134_P3_kin_N PF17927.1 gi|530549365|ref|YP_008429915.1| - 0.28 11.6 1.1 54 4.3 0.0 3.6 3 1 0 4 4 3 0 Inositol 1,3,4-trisphosphate 5/6-kinase pre-ATP-grasp domain Spore_III_AB PF09548.10 gi|530549365|ref|YP_008429915.1| - 0.33 11.0 3.4 14 5.8 0.1 3.6 3 0 0 3 3 3 0 Stage III sporulation protein AB (spore_III_AB) PRC PF05239.16 gi|530549366|ref|YP_008429916.1| - 4.9e-14 52.2 0.3 5.8e-14 51.9 0.3 1.1 1 0 0 1 1 1 1 PRC-barrel domain DUF4401 PF14351.6 gi|530549367|ref|YP_008429917.1| - 0.023 14.0 4.3 0.035 13.4 4.3 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4401) DUF2070 PF09843.9 gi|530549367|ref|YP_008429917.1| - 0.33 9.2 5.9 0.41 8.9 5.9 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) DUF202 PF02656.15 gi|530549367|ref|YP_008429917.1| - 4.5 7.8 6.1 18 5.9 0.4 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF202) DUF2178 PF09946.9 gi|530549368|ref|YP_008429918.1| - 1.1e-11 44.8 2.4 1.4e-11 44.5 2.4 1.2 1 0 0 1 1 1 1 Predicted membrane protein (DUF2178) RseC_MucC PF04246.12 gi|530549368|ref|YP_008429918.1| - 0.14 12.1 5.8 0.77 9.7 0.2 2.1 1 1 1 2 2 2 0 Positive regulator of sigma(E), RseC/MucC Tom6 PF17112.5 gi|530549368|ref|YP_008429918.1| - 0.15 11.6 1.1 0.23 11.0 0.1 1.8 2 0 0 2 2 2 0 Mitochondrial import receptor subunit Tom6, fungal HTH_3 PF01381.22 gi|530547467|ref|YP_008429919.1| - 5.6e-22 77.6 0.2 6.3e-22 77.4 0.2 1.0 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 gi|530547467|ref|YP_008429919.1| - 3.7e-16 58.9 0.8 4.4e-16 58.6 0.8 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|530547467|ref|YP_008429919.1| - 1e-13 51.4 0.0 1.2e-13 51.2 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.6 gi|530547467|ref|YP_008429919.1| - 3.7e-09 36.9 0.0 4.6e-09 36.6 0.0 1.1 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_25 PF13413.6 gi|530547467|ref|YP_008429919.1| - 5.8e-08 32.5 1.3 7.7e-08 32.1 1.3 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|530547467|ref|YP_008429919.1| - 3.3e-05 23.7 0.3 5.1e-05 23.1 0.3 1.3 1 0 0 1 1 1 1 HTH domain HTH_24 PF13412.6 gi|530547467|ref|YP_008429919.1| - 4.5e-05 22.9 0.1 6e-05 22.5 0.1 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Sigma70_r4 PF04545.16 gi|530547467|ref|YP_008429919.1| - 5.9e-05 22.5 1.2 0.0001 21.7 1.2 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_37 PF13744.6 gi|530547467|ref|YP_008429919.1| - 0.00022 21.1 0.1 0.00033 20.6 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 gi|530547467|ref|YP_008429919.1| - 0.0003 20.5 0.1 0.00067 19.4 0.1 1.5 2 0 0 2 2 2 1 Homeodomain-like domain HTH_Crp_2 PF13545.6 gi|530547467|ref|YP_008429919.1| - 0.00068 19.6 0.1 0.0013 18.7 0.1 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain MarR PF01047.22 gi|530547467|ref|YP_008429919.1| - 0.0016 18.4 0.0 0.007 16.3 0.0 1.8 2 0 0 2 2 2 1 MarR family MarR_2 PF12802.7 gi|530547467|ref|YP_008429919.1| - 0.0028 17.5 0.1 0.0045 16.8 0.1 1.3 1 0 0 1 1 1 1 MarR family HTH_38 PF13936.6 gi|530547467|ref|YP_008429919.1| - 0.0029 17.3 0.3 0.011 15.5 0.2 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain YdaS_antitoxin PF15943.5 gi|530547467|ref|YP_008429919.1| - 0.0034 17.2 0.0 0.0046 16.8 0.0 1.2 1 0 0 1 1 1 1 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT TnsD PF15978.5 gi|530547467|ref|YP_008429919.1| - 0.0041 16.2 0.0 0.0041 16.2 0.0 1.1 1 0 0 1 1 1 1 Tn7-like transposition protein D HTH_7 PF02796.15 gi|530547467|ref|YP_008429919.1| - 0.0096 16.0 0.5 0.028 14.5 0.1 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain of resolvase GntR PF00392.21 gi|530547467|ref|YP_008429919.1| - 0.017 14.8 0.2 0.036 13.7 0.2 1.6 1 1 1 2 2 2 0 Bacterial regulatory proteins, gntR family Sigma70_r4_2 PF08281.12 gi|530547467|ref|YP_008429919.1| - 0.022 14.4 0.1 0.052 13.2 0.0 1.6 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_AsnC-type PF13404.6 gi|530547467|ref|YP_008429919.1| - 0.037 13.9 0.3 0.052 13.4 0.3 1.2 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_20 PF12840.7 gi|530547467|ref|YP_008429919.1| - 0.037 14.1 0.1 0.053 13.6 0.1 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_17 PF12728.7 gi|530547467|ref|YP_008429919.1| - 0.042 14.0 0.0 0.062 13.5 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_29 PF13551.6 gi|530547467|ref|YP_008429919.1| - 0.052 13.6 0.0 0.085 12.9 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn helix Crp PF00325.20 gi|530547467|ref|YP_008429919.1| - 0.077 12.7 0.1 0.15 11.7 0.1 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, crp family HTH_10 PF04967.12 gi|530547467|ref|YP_008429919.1| - 0.08 12.8 0.1 0.17 11.7 0.0 1.6 1 1 1 2 2 2 0 HTH DNA binding domain HTH_28 PF13518.6 gi|530547467|ref|YP_008429919.1| - 0.092 12.9 0.0 0.16 12.1 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain DUF1323 PF07037.11 gi|530547467|ref|YP_008429919.1| - 0.11 12.8 0.0 0.15 12.4 0.0 1.2 1 0 0 1 1 1 0 Putative transcription regulator (DUF1323) ABC_tran PF00005.27 gi|530549370|ref|YP_008429921.1| - 6.2e-27 94.8 0.0 8.3e-27 94.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|530549370|ref|YP_008429921.1| - 5.5e-12 46.1 0.4 6.2e-05 23.0 0.1 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|530549370|ref|YP_008429921.1| - 4.5e-05 23.1 0.2 9.5e-05 22.1 0.2 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|530549370|ref|YP_008429921.1| - 6.2e-05 23.6 0.4 7.8e-05 23.3 0.4 1.4 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|530549370|ref|YP_008429921.1| - 0.0018 18.1 0.1 0.0039 17.0 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.19 gi|530549370|ref|YP_008429921.1| - 0.0024 17.3 0.2 1.4 8.3 0.1 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain Rad17 PF03215.15 gi|530549370|ref|YP_008429921.1| - 0.0049 16.8 0.0 0.0092 15.9 0.0 1.4 1 0 0 1 1 1 1 Rad17 P-loop domain SRP54 PF00448.22 gi|530549370|ref|YP_008429921.1| - 0.016 14.9 0.1 0.2 11.2 0.1 2.1 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_27 PF13514.6 gi|530549370|ref|YP_008429921.1| - 0.02 14.5 0.2 0.039 13.5 0.1 1.5 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|530549370|ref|YP_008429921.1| - 0.024 14.4 0.3 0.033 13.9 0.3 1.5 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|530549370|ref|YP_008429921.1| - 0.027 14.7 0.1 0.053 13.8 0.1 1.6 1 1 0 1 1 1 0 AAA domain MeaB PF03308.16 gi|530549370|ref|YP_008429921.1| - 0.059 12.3 0.1 0.1 11.6 0.1 1.4 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_8 PF12780.7 gi|530549370|ref|YP_008429921.1| - 0.06 12.7 0.2 0.53 9.6 0.0 2.3 3 0 0 3 3 3 0 P-loop containing dynein motor region D4 AAA_18 PF13238.6 gi|530549370|ref|YP_008429921.1| - 0.067 13.7 0.1 0.14 12.7 0.1 1.5 1 0 0 1 1 1 0 AAA domain Thymidylate_kin PF02223.17 gi|530549370|ref|YP_008429921.1| - 0.081 12.6 0.0 0.13 12.0 0.0 1.4 1 0 0 1 1 1 0 Thymidylate kinase AAA_17 PF13207.6 gi|530549370|ref|YP_008429921.1| - 0.096 13.1 0.2 0.27 11.6 0.1 1.8 1 1 0 1 1 1 0 AAA domain RTTN_N PF14726.6 gi|530549370|ref|YP_008429921.1| - 0.14 12.9 0.0 0.36 11.7 0.0 1.7 1 0 0 1 1 1 0 Rotatin, an armadillo repeat protein, centriole functioning AAA_28 PF13521.6 gi|530549370|ref|YP_008429921.1| - 0.18 12.1 0.1 0.34 11.1 0.1 1.4 1 0 0 1 1 1 0 AAA domain ABC2_membrane_3 PF12698.7 gi|530549371|ref|YP_008429922.1| - 2.6e-41 141.9 23.6 3e-41 141.7 23.6 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|530549371|ref|YP_008429922.1| - 1.7e-26 93.2 20.5 2.6e-26 92.6 20.5 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|530549371|ref|YP_008429922.1| - 5.7e-14 52.0 27.1 1.4e-12 47.5 22.0 2.6 2 1 0 2 2 2 2 ABC-2 type transporter ABC2_membrane_4 PF12730.7 gi|530549371|ref|YP_008429922.1| - 2.8e-05 24.2 14.8 2.8e-05 24.2 14.8 3.2 2 1 1 3 3 3 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|530549371|ref|YP_008429922.1| - 0.00015 21.4 30.2 0.00021 20.9 26.8 2.8 2 1 0 2 2 2 1 ABC-2 family transporter protein PHO4 PF01384.20 gi|530549372|ref|YP_008429923.1| - 3.6e-35 121.6 21.2 2.4e-34 118.9 21.2 1.8 1 1 0 1 1 1 1 Phosphate transporter family PHO4 PF01384.20 gi|530549373|ref|YP_008429924.1| - 3e-28 98.9 8.8 3.8e-28 98.5 8.8 1.1 1 0 0 1 1 1 1 Phosphate transporter family POR PF01558.18 gi|530549374|ref|YP_008429925.1| - 3.6e-45 154.2 0.6 4.2e-45 154.0 0.6 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase MAF_flag10 PF01973.18 gi|530549374|ref|YP_008429925.1| - 0.025 14.3 0.0 0.036 13.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function DUF115 SepF PF04472.12 gi|530549374|ref|YP_008429925.1| - 0.063 13.6 0.0 0.15 12.3 0.0 1.6 1 0 0 1 1 1 0 Cell division protein SepF Fer4 PF00037.27 gi|530549375|ref|YP_008429926.1| - 3.4e-15 55.1 16.5 3.3e-08 33.0 4.1 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|530549375|ref|YP_008429926.1| - 1.3e-11 44.4 8.9 1.7e-11 44.0 8.9 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|530549375|ref|YP_008429926.1| - 5.5e-10 38.9 15.7 4.4e-05 23.4 4.4 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|530549375|ref|YP_008429926.1| - 4e-09 36.5 5.0 5.8e-09 36.0 5.0 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|530549375|ref|YP_008429926.1| - 7.8e-08 32.8 10.7 1.7e-07 31.7 10.8 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|530549375|ref|YP_008429926.1| - 1.3e-07 31.6 23.7 4.3e-06 26.7 13.2 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|530549375|ref|YP_008429926.1| - 2.1e-07 30.6 11.1 0.00076 19.4 2.9 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|530549375|ref|YP_008429926.1| - 3.7e-07 31.0 10.5 0.00044 21.1 3.0 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_13 PF13370.6 gi|530549375|ref|YP_008429926.1| - 8.7e-06 26.2 10.2 0.00095 19.7 1.2 2.5 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|530549375|ref|YP_008429926.1| - 0.00015 22.5 10.8 0.099 13.4 1.1 2.8 1 1 1 2 2 2 2 4Fe-4S single cluster domain Fer4_17 PF13534.6 gi|530549375|ref|YP_008429926.1| - 0.015 15.8 11.9 0.46 11.1 3.0 2.2 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|530549375|ref|YP_008429926.1| - 0.021 15.3 12.8 0.32 11.6 4.0 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_8 PF13183.6 gi|530549375|ref|YP_008429926.1| - 0.04 14.4 12.9 0.23 11.9 3.5 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|530549375|ref|YP_008429926.1| - 0.11 13.4 9.7 0.43 11.4 2.1 2.2 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|530549375|ref|YP_008429926.1| - 1.9 8.7 8.6 23 5.2 1.4 2.0 1 1 1 2 2 2 0 4Fe-4S dicluster domain POR_N PF01855.19 gi|530549376|ref|YP_008429927.1| - 9.5e-78 261.1 1.4 1.2e-77 260.7 1.4 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 gi|530549376|ref|YP_008429927.1| - 8e-34 116.0 0.0 2e-33 114.7 0.0 1.7 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|530549376|ref|YP_008429927.1| - 6.5e-06 26.0 0.0 2.2e-05 24.3 0.0 1.8 2 0 0 2 2 2 1 Transketolase, C-terminal domain TPP_enzyme_N PF02776.18 gi|530549376|ref|YP_008429927.1| - 0.021 14.4 1.3 0.038 13.6 1.3 1.4 1 0 0 1 1 1 0 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Syntaxin_2 PF14523.6 gi|530549376|ref|YP_008429927.1| - 0.059 13.7 0.0 0.31 11.4 0.0 2.0 2 0 0 2 2 2 0 Syntaxin-like protein Tenui_NS4 PF03300.13 gi|530549376|ref|YP_008429927.1| - 0.071 12.5 0.0 0.12 11.8 0.0 1.2 1 0 0 1 1 1 0 Tenuivirus non-structural, movement protein NS4 TPP_enzyme_C PF02775.21 gi|530549377|ref|YP_008429928.1| - 8.2e-19 67.9 0.0 1.2e-18 67.4 0.0 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Fer4 PF00037.27 gi|530549378|ref|YP_008429929.1| - 9.8e-13 47.3 13.9 1.9e-08 33.8 4.8 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|530549378|ref|YP_008429929.1| - 3.7e-12 45.8 12.9 1.5e-06 28.0 3.2 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|530549378|ref|YP_008429929.1| - 1.5e-10 41.1 6.2 2e-10 40.7 6.2 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|530549378|ref|YP_008429929.1| - 1.6e-09 37.3 11.1 0.00012 22.0 2.8 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|530549378|ref|YP_008429929.1| - 7.9e-09 36.0 22.9 6.7e-07 29.8 11.4 1.7 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|530549378|ref|YP_008429929.1| - 1.8e-07 31.9 8.6 0.00049 21.0 3.0 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|530549378|ref|YP_008429929.1| - 2.3e-07 30.8 18.7 3.5e-06 27.1 9.7 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|530549378|ref|YP_008429929.1| - 1.3e-06 28.4 22.5 0.00014 21.9 12.6 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|530549378|ref|YP_008429929.1| - 0.00017 22.2 9.4 0.12 13.2 2.9 2.6 2 1 0 2 2 2 2 4Fe-4S single cluster domain Fer4_22 PF17179.4 gi|530549378|ref|YP_008429929.1| - 0.00028 21.7 4.1 0.11 13.4 0.3 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|530549378|ref|YP_008429929.1| - 0.003 18.0 13.5 0.24 11.9 3.5 2.2 1 1 3 4 4 3 3 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|530549378|ref|YP_008429929.1| - 0.0041 17.5 12.5 0.32 11.6 4.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|530549378|ref|YP_008429929.1| - 0.0056 17.2 12.2 0.58 10.7 3.1 2.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|530549378|ref|YP_008429929.1| - 0.091 13.3 13.4 0.36 11.4 2.1 2.4 1 1 1 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I POR_N PF01855.19 gi|530549379|ref|YP_008429930.1| - 1.2e-79 267.3 0.5 1.6e-79 266.9 0.5 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 gi|530549379|ref|YP_008429930.1| - 1.2e-26 93.0 0.0 2.4e-26 92.0 0.0 1.5 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|530549379|ref|YP_008429930.1| - 1.2e-06 28.4 0.3 2.9e-06 27.2 0.1 1.8 2 0 0 2 2 2 1 Transketolase, C-terminal domain TPP_enzyme_C PF02775.21 gi|530549380|ref|YP_008429931.1| - 5.7e-26 91.1 0.1 1e-25 90.3 0.1 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DXP_synthase_N PF13292.6 gi|530549380|ref|YP_008429931.1| - 0.057 12.6 0.1 0.1 11.8 0.1 1.3 1 0 0 1 1 1 0 1-deoxy-D-xylulose-5-phosphate synthase Rep_1B PF17873.1 gi|530549380|ref|YP_008429931.1| - 0.2 11.6 1.2 0.33 10.8 0.0 2.0 2 0 0 2 2 2 0 Replicase polyprotein 1ab ParA PF10609.9 gi|530549381|ref|YP_008429932.1| - 4e-95 318.0 1.0 4.8e-95 317.7 1.0 1.1 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|530549381|ref|YP_008429932.1| - 9.5e-16 58.0 0.0 2.8e-15 56.5 0.0 1.7 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|530549381|ref|YP_008429932.1| - 1e-11 45.1 0.5 4.5e-11 43.0 0.5 1.9 1 1 0 1 1 1 1 AAA domain MipZ PF09140.11 gi|530549381|ref|YP_008429932.1| - 7.2e-08 32.0 0.1 7.4e-07 28.7 0.0 2.1 2 0 0 2 2 2 1 ATPase MipZ ArsA_ATPase PF02374.15 gi|530549381|ref|YP_008429932.1| - 5.1e-07 29.2 0.3 3.5e-05 23.1 0.3 2.3 2 0 0 2 2 2 1 Anion-transporting ATPase Fer4_NifH PF00142.18 gi|530549381|ref|YP_008429932.1| - 2.3e-06 27.3 0.7 1.6e-05 24.5 0.7 2.0 1 1 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_25 PF13481.6 gi|530549381|ref|YP_008429932.1| - 4.6e-05 23.1 0.0 7.1e-05 22.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain APS_kinase PF01583.20 gi|530549381|ref|YP_008429932.1| - 0.00019 21.3 0.0 0.00031 20.7 0.0 1.3 1 0 0 1 1 1 1 Adenylylsulphate kinase CLP1_P PF16575.5 gi|530549381|ref|YP_008429932.1| - 0.0017 18.2 0.0 0.0038 17.0 0.0 1.6 2 0 0 2 2 2 1 mRNA cleavage and polyadenylation factor CLP1 P-loop RsgA_GTPase PF03193.16 gi|530549381|ref|YP_008429932.1| - 0.0074 16.2 0.1 0.016 15.1 0.1 1.5 1 0 0 1 1 1 1 RsgA GTPase CBP_BcsQ PF06564.12 gi|530549381|ref|YP_008429932.1| - 0.0075 15.8 0.2 0.022 14.3 0.2 1.7 1 1 0 1 1 1 1 Cellulose biosynthesis protein BcsQ AAA_16 PF13191.6 gi|530549381|ref|YP_008429932.1| - 0.01 16.2 0.0 0.018 15.4 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain VirC1 PF07015.11 gi|530549381|ref|YP_008429932.1| - 0.015 14.6 0.0 0.027 13.8 0.0 1.3 1 0 0 1 1 1 0 VirC1 protein MeaB PF03308.16 gi|530549381|ref|YP_008429932.1| - 0.016 14.2 0.9 0.021 13.8 0.1 1.6 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB DAP3 PF10236.9 gi|530549381|ref|YP_008429932.1| - 0.03 13.5 0.1 0.047 12.9 0.1 1.2 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 DnaB_C PF03796.15 gi|530549381|ref|YP_008429932.1| - 0.031 13.6 0.0 0.051 12.9 0.0 1.3 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain SRP54 PF00448.22 gi|530549381|ref|YP_008429932.1| - 0.033 13.8 0.8 0.073 12.7 0.1 1.9 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain TIP49 PF06068.13 gi|530549381|ref|YP_008429932.1| - 0.035 13.3 0.1 0.057 12.6 0.1 1.3 1 0 0 1 1 1 0 TIP49 P-loop domain Zeta_toxin PF06414.12 gi|530549381|ref|YP_008429932.1| - 0.036 13.4 0.1 0.069 12.4 0.1 1.4 1 0 0 1 1 1 0 Zeta toxin NTPase_1 PF03266.15 gi|530549381|ref|YP_008429932.1| - 0.054 13.4 0.1 0.15 12.0 0.1 1.7 1 0 0 1 1 1 0 NTPase AAA_18 PF13238.6 gi|530549381|ref|YP_008429932.1| - 0.054 14.0 0.1 0.13 12.8 0.1 1.6 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|530549381|ref|YP_008429932.1| - 0.078 13.4 0.0 0.2 12.0 0.0 1.7 1 0 0 1 1 1 0 RNA helicase KTI12 PF08433.10 gi|530549381|ref|YP_008429932.1| - 0.099 12.1 0.0 0.17 11.3 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 NB-ARC PF00931.22 gi|530549381|ref|YP_008429932.1| - 0.1 11.7 0.1 0.19 10.9 0.1 1.4 1 0 0 1 1 1 0 NB-ARC domain zinc_ribbon_2 PF13240.6 gi|530549381|ref|YP_008429932.1| - 0.11 12.2 0.3 0.18 11.5 0.3 1.3 1 0 0 1 1 1 0 zinc-ribbon domain IstB_IS21 PF01695.17 gi|530549381|ref|YP_008429932.1| - 0.13 12.0 0.1 0.29 10.8 0.1 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein NACHT PF05729.12 gi|530549381|ref|YP_008429932.1| - 0.14 12.0 0.4 0.25 11.3 0.4 1.3 1 0 0 1 1 1 0 NACHT domain AAA_30 PF13604.6 gi|530549381|ref|YP_008429932.1| - 0.15 11.8 0.1 0.28 10.9 0.1 1.4 1 0 0 1 1 1 0 AAA domain DUF2110 PF09883.9 gi|530549383|ref|YP_008429934.1| - 1.9e-72 243.5 0.2 2.1e-72 243.3 0.2 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2110) DUF4160 PF13711.6 gi|530549383|ref|YP_008429934.1| - 0.11 12.9 0.2 0.52 10.7 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4160) TFIIE_alpha PF02002.17 gi|530549384|ref|YP_008429935.1| - 1.2e-24 86.2 5.7 1.2e-24 86.2 5.7 1.9 2 0 0 2 2 2 1 TFIIE alpha subunit Rad50_zn_hook PF04423.14 gi|530549384|ref|YP_008429935.1| - 8.1e-06 25.6 0.7 8.1e-06 25.6 0.7 3.3 3 1 1 4 4 4 1 Rad50 zinc hook motif TF_Zn_Ribbon PF08271.12 gi|530549384|ref|YP_008429935.1| - 0.00022 20.7 0.1 0.00052 19.5 0.1 1.6 1 0 0 1 1 1 1 TFIIB zinc-binding Sigma70_r3 PF04539.16 gi|530549384|ref|YP_008429935.1| - 0.00077 19.5 0.2 0.00077 19.5 0.2 2.3 3 0 0 3 3 3 1 Sigma-70 region 3 Sigma70_r4_2 PF08281.12 gi|530549384|ref|YP_008429935.1| - 0.0011 18.6 0.2 0.13 11.9 0.1 2.5 2 0 0 2 2 2 1 Sigma-70, region 4 TrmB PF01978.19 gi|530549384|ref|YP_008429935.1| - 0.0014 18.5 0.2 0.0036 17.1 0.2 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Prefoldin_2 PF01920.20 gi|530549384|ref|YP_008429935.1| - 0.0021 18.0 7.1 0.074 13.0 0.1 3.2 3 0 0 3 3 3 1 Prefoldin subunit HTH_Crp_2 PF13545.6 gi|530549384|ref|YP_008429935.1| - 0.0041 17.1 0.0 0.0093 15.9 0.0 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain Rrf2 PF02082.20 gi|530549384|ref|YP_008429935.1| - 0.013 15.8 0.1 0.025 14.9 0.1 1.4 1 0 0 1 1 1 0 Transcriptional regulator HTH_23 PF13384.6 gi|530549384|ref|YP_008429935.1| - 0.017 14.9 0.0 0.04 13.7 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain PLC-beta_C PF08703.10 gi|530549384|ref|YP_008429935.1| - 0.023 14.7 1.7 0.023 14.7 1.7 3.2 2 1 1 3 3 3 0 PLC-beta C terminal RPAP3_C PF13877.6 gi|530549384|ref|YP_008429935.1| - 0.026 15.1 0.1 0.43 11.1 0.1 2.4 1 1 1 2 2 2 0 Potential Monad-binding region of RPAP3 HTH_9 PF08221.11 gi|530549384|ref|YP_008429935.1| - 0.034 14.2 0.0 0.077 13.1 0.0 1.6 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain zf-ISL3 PF14690.6 gi|530549384|ref|YP_008429935.1| - 0.069 13.8 0.1 4.7 8.0 0.0 2.5 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 WAC_Acf1_DNA_bd PF10537.9 gi|530549384|ref|YP_008429935.1| - 0.11 13.0 3.2 0.15 12.6 0.8 2.2 1 1 1 2 2 2 0 ATP-utilising chromatin assembly and remodelling N-terminal HTH_IclR PF09339.10 gi|530549384|ref|YP_008429935.1| - 0.13 12.1 0.0 0.26 11.1 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|530549384|ref|YP_008429935.1| - 0.14 11.7 0.0 0.14 11.7 0.0 2.7 3 2 0 3 3 3 0 Winged helix-turn-helix DNA-binding UPF0167 PF03691.14 gi|530549384|ref|YP_008429935.1| - 0.16 11.7 1.0 0.84 9.4 0.1 2.1 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0167) dCache_2 PF08269.11 gi|530549384|ref|YP_008429935.1| - 0.23 10.6 4.3 1.1 8.3 0.8 2.4 1 1 2 3 3 3 0 Cache domain MerR-DNA-bind PF09278.11 gi|530549384|ref|YP_008429935.1| - 0.61 10.7 0.0 0.61 10.7 0.0 3.4 3 1 1 4 4 4 0 MerR, DNA binding HTH_3 PF01381.22 gi|530549384|ref|YP_008429935.1| - 1.1 9.3 0.0 1.1 9.3 0.0 2.9 3 1 0 3 3 3 0 Helix-turn-helix 4HB_MCP_1 PF12729.7 gi|530549384|ref|YP_008429935.1| - 9.1 5.8 10.9 0.1 12.1 1.8 2.1 3 0 0 3 3 3 0 Four helix bundle sensory module for signal transduction Gcw_chp PF09694.10 gi|530549385|ref|YP_008429936.1| - 0.017 15.1 0.0 0.019 15.0 0.0 1.0 1 0 0 1 1 1 0 Bacterial protein of unknown function (Gcw_chp) ABC_tran PF00005.27 gi|530549386|ref|YP_008429937.1| - 3e-32 112.0 0.0 5.4e-32 111.2 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|530549386|ref|YP_008429937.1| - 2.3e-12 47.3 2.7 1.8e-08 34.6 0.0 2.5 2 1 1 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|530549386|ref|YP_008429937.1| - 3.6e-07 30.8 0.3 3.4e-06 27.7 0.1 2.7 2 1 0 2 2 2 1 Domain of unknown function (DUF4162) AAA_22 PF13401.6 gi|530549386|ref|YP_008429937.1| - 0.00068 19.9 0.3 0.0024 18.1 0.3 1.9 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|530549386|ref|YP_008429937.1| - 0.0013 18.4 0.0 0.034 13.9 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_15 PF13175.6 gi|530549386|ref|YP_008429937.1| - 0.0019 18.0 0.0 0.29 10.8 0.0 2.2 1 1 1 2 2 2 1 AAA ATPase domain NTPase_1 PF03266.15 gi|530549386|ref|YP_008429937.1| - 0.0025 17.7 0.4 0.25 11.2 0.0 2.2 1 1 1 2 2 2 1 NTPase AAA_29 PF13555.6 gi|530549386|ref|YP_008429937.1| - 0.0026 17.5 0.0 0.0061 16.3 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|530549386|ref|YP_008429937.1| - 0.0031 18.0 2.1 0.0062 17.1 1.9 1.6 1 1 0 1 1 1 1 AAA domain SRP54 PF00448.22 gi|530549386|ref|YP_008429937.1| - 0.0043 16.7 0.1 0.062 12.9 0.0 2.5 2 1 1 3 3 3 1 SRP54-type protein, GTPase domain AAA_19 PF13245.6 gi|530549386|ref|YP_008429937.1| - 0.0081 16.5 0.0 0.014 15.7 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|530549386|ref|YP_008429937.1| - 0.028 14.9 0.4 0.16 12.4 0.4 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.15 gi|530549386|ref|YP_008429937.1| - 0.04 13.8 0.0 0.069 13.1 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_24 PF13479.6 gi|530549386|ref|YP_008429937.1| - 0.041 13.6 0.1 0.19 11.4 0.0 2.0 2 1 0 2 2 2 0 AAA domain BON PF04972.17 gi|530549386|ref|YP_008429937.1| - 0.053 13.8 0.0 1.7 9.0 0.0 2.4 2 0 0 2 2 2 0 BON domain AAA_16 PF13191.6 gi|530549386|ref|YP_008429937.1| - 0.1 13.0 0.0 0.23 11.9 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain AAA_13 PF13166.6 gi|530549386|ref|YP_008429937.1| - 0.15 10.7 0.1 9 4.8 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_7 PF12775.7 gi|530549386|ref|YP_008429937.1| - 0.19 11.3 0.0 0.5 9.9 0.0 1.6 2 0 0 2 2 2 0 P-loop containing dynein motor region ABC2_membrane PF01061.24 gi|530549388|ref|YP_008429939.1| - 1.8e-15 57.0 22.9 7.5e-15 54.9 19.5 2.0 2 0 0 2 2 2 2 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|530549388|ref|YP_008429939.1| - 0.00094 18.4 26.0 0.0011 18.1 26.0 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|530549389|ref|YP_008429940.1| - 9.4e-14 51.3 24.7 9.4e-14 51.3 24.7 2.1 1 1 1 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|530549389|ref|YP_008429940.1| - 1.9e-07 30.5 32.5 1.9e-07 30.5 32.5 1.6 1 1 1 2 2 2 1 ABC-2 family transporter protein PfkB PF00294.24 gi|530549390|ref|YP_008429941.1| - 3e-47 161.4 0.2 3.6e-47 161.1 0.2 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase PmbA_TldD PF01523.16 gi|530549391|ref|YP_008429942.1| - 3.3e-43 148.5 0.5 4.9e-43 148.0 0.3 1.3 2 0 0 2 2 2 1 Putative modulator of DNA gyrase PmbA_TldD PF01523.16 gi|530549392|ref|YP_008429943.1| - 6.4e-49 167.3 0.2 1e-48 166.6 0.2 1.3 1 0 0 1 1 1 1 Putative modulator of DNA gyrase DUF512 PF04459.12 gi|530549393|ref|YP_008429944.1| - 1.3e-11 44.2 0.0 5.6e-11 42.1 0.0 2.0 3 0 0 3 3 3 1 Protein of unknown function (DUF512) Radical_SAM PF04055.21 gi|530549393|ref|YP_008429944.1| - 3.6e-07 30.7 0.3 3.6e-07 30.7 0.3 2.9 2 1 1 3 3 3 1 Radical SAM superfamily DUF835 PF05763.12 gi|530549394|ref|YP_008429945.1| - 5.6e-20 71.5 0.6 5.6e-20 71.5 0.6 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF835) Rubrerythrin PF02915.17 gi|530549394|ref|YP_008429945.1| - 4.6e-12 46.5 4.0 4.6e-12 46.5 4.0 2.2 2 1 0 2 2 2 1 Rubrerythrin Acetyltransf_4 PF13420.7 gi|530549394|ref|YP_008429945.1| - 0.0082 16.3 0.1 0.018 15.2 0.1 1.7 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain NOG1_N PF17835.1 gi|530549396|ref|YP_008429947.1| - 4.8e-52 176.1 1.4 8.6e-52 175.3 1.4 1.4 1 0 0 1 1 1 1 NOG1 N-terminal helical domain NOG1 PF06858.14 gi|530549396|ref|YP_008429947.1| - 5.4e-25 87.0 0.0 1.3e-24 85.7 0.0 1.7 1 0 0 1 1 1 1 Nucleolar GTP-binding protein 1 (NOG1) MMR_HSR1 PF01926.23 gi|530549396|ref|YP_008429947.1| - 2.1e-21 76.1 0.0 4.8e-21 75.0 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|530549396|ref|YP_008429947.1| - 1.3e-19 70.2 0.0 2e-19 69.6 0.0 1.3 1 0 0 1 1 1 1 Ferrous iron transport protein B RsgA_GTPase PF03193.16 gi|530549396|ref|YP_008429947.1| - 7.7e-10 38.9 0.1 0.00011 22.2 0.0 2.8 2 1 0 2 2 2 2 RsgA GTPase MMR_HSR1_Xtn PF16897.5 gi|530549396|ref|YP_008429947.1| - 1.1e-07 31.8 0.0 2.1e-06 27.7 0.0 2.5 2 0 0 2 2 2 1 C-terminal region of MMR_HSR1 domain PduV-EutP PF10662.9 gi|530549396|ref|YP_008429947.1| - 3.2e-07 30.2 0.4 2.7e-05 23.9 0.2 3.1 2 1 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation Arf PF00025.21 gi|530549396|ref|YP_008429947.1| - 3.1e-06 26.8 0.0 6.3e-05 22.5 0.0 2.4 1 1 0 1 1 1 1 ADP-ribosylation factor family Ras PF00071.22 gi|530549396|ref|YP_008429947.1| - 3.7e-06 26.6 0.0 2.1e-05 24.2 0.0 2.0 1 1 0 1 1 1 1 Ras family GTP_EFTU PF00009.27 gi|530549396|ref|YP_008429947.1| - 4.1e-06 26.5 0.6 0.16 11.5 0.0 3.5 2 2 1 3 3 3 2 Elongation factor Tu GTP binding domain cobW PF02492.19 gi|530549396|ref|YP_008429947.1| - 0.00091 18.9 0.0 0.51 9.9 0.0 2.3 2 0 0 2 2 2 2 CobW/HypB/UreG, nucleotide-binding domain ATP_bind_1 PF03029.17 gi|530549396|ref|YP_008429947.1| - 0.0014 18.4 0.0 0.12 12.2 0.0 2.7 1 1 1 2 2 2 1 Conserved hypothetical ATP binding protein Roc PF08477.13 gi|530549396|ref|YP_008429947.1| - 0.003 17.8 0.0 0.045 14.0 0.0 2.3 1 1 0 1 1 1 1 Ras of Complex, Roc, domain of DAPkinase G-alpha PF00503.20 gi|530549396|ref|YP_008429947.1| - 0.0048 16.1 0.3 0.11 11.6 0.0 2.6 2 1 0 2 2 2 1 G-protein alpha subunit SRPRB PF09439.10 gi|530549396|ref|YP_008429947.1| - 0.012 15.0 0.0 0.026 13.9 0.0 1.6 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit AAA_16 PF13191.6 gi|530549396|ref|YP_008429947.1| - 0.012 16.0 0.0 0.08 13.3 0.0 2.3 1 1 1 2 2 2 0 AAA ATPase domain AAA_18 PF13238.6 gi|530549396|ref|YP_008429947.1| - 0.014 16.0 0.0 0.047 14.2 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.6 gi|530549396|ref|YP_008429947.1| - 0.024 14.9 0.0 0.061 13.6 0.0 1.8 1 0 0 1 1 1 0 AAA domain Dynamin_N PF00350.23 gi|530549396|ref|YP_008429947.1| - 0.034 14.2 0.2 8.8 6.4 0.0 2.9 2 2 1 3 3 3 0 Dynamin family AIG1 PF04548.16 gi|530549396|ref|YP_008429947.1| - 0.044 13.1 0.0 0.12 11.7 0.0 1.8 2 0 0 2 2 2 0 AIG1 family NTPase_1 PF03266.15 gi|530549396|ref|YP_008429947.1| - 0.051 13.5 0.2 0.32 10.9 0.0 2.4 2 1 0 3 3 3 0 NTPase RNA_helicase PF00910.22 gi|530549396|ref|YP_008429947.1| - 0.077 13.4 0.0 0.14 12.5 0.0 1.5 1 0 0 1 1 1 0 RNA helicase TniB PF05621.11 gi|530549396|ref|YP_008429947.1| - 0.082 12.3 0.0 0.33 10.3 0.0 2.0 2 0 0 2 2 2 0 Bacterial TniB protein DZR PF12773.7 gi|530549397|ref|YP_008429948.1| - 4.1e-09 36.3 10.5 5.8e-09 35.8 10.5 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_15 PF17032.5 gi|530549397|ref|YP_008429948.1| - 6.9e-07 29.9 8.2 0.00053 20.7 0.8 2.6 2 0 0 2 2 2 2 zinc-ribbon family zinc_ribbon_2 PF13240.6 gi|530549397|ref|YP_008429948.1| - 5.1e-06 26.0 19.3 0.00037 20.1 5.2 2.7 2 1 0 2 2 2 2 zinc-ribbon domain 60KD_IMP PF02096.20 gi|530549397|ref|YP_008429948.1| - 0.00041 20.3 6.2 0.00082 19.3 3.2 2.4 2 1 0 2 2 2 1 60Kd inner membrane protein zf-ribbon_3 PF13248.6 gi|530549397|ref|YP_008429948.1| - 0.0012 18.2 20.1 0.095 12.1 4.7 3.2 1 1 1 3 3 3 3 zinc-ribbon domain DUF2524 PF10732.9 gi|530549397|ref|YP_008429948.1| - 0.0031 17.8 13.2 0.061 13.6 6.6 2.3 1 1 1 2 2 2 2 Protein of unknown function (DUF2524) DUF2207 PF09972.9 gi|530549397|ref|YP_008429948.1| - 0.0045 15.8 7.1 0.0088 14.8 7.0 1.6 1 1 0 1 1 1 1 Predicted membrane protein (DUF2207) Cys_rich_KTR PF14205.6 gi|530549397|ref|YP_008429948.1| - 0.066 13.0 2.7 0.11 12.3 2.7 1.4 1 0 0 1 1 1 0 Cysteine-rich KTR DUF624 PF04854.14 gi|530549397|ref|YP_008429948.1| - 0.066 13.3 0.3 0.066 13.3 0.3 2.9 3 1 1 4 4 3 0 Protein of unknown function, DUF624 CALCOCO1 PF07888.11 gi|530549397|ref|YP_008429948.1| - 0.11 11.4 6.6 0.14 11.0 6.6 1.0 1 0 0 1 1 1 0 Calcium binding and coiled-coil domain (CALCOCO1) like AAA_15 PF13175.6 gi|530549397|ref|YP_008429948.1| - 0.12 12.1 2.8 0.16 11.7 2.8 1.1 1 0 0 1 1 1 0 AAA ATPase domain Syntaxin_2 PF14523.6 gi|530549397|ref|YP_008429948.1| - 0.13 12.6 2.6 0.2 12.1 0.1 2.2 2 1 0 2 2 2 0 Syntaxin-like protein zf-NADH-PPase PF09297.11 gi|530549397|ref|YP_008429948.1| - 0.14 11.9 8.1 3.4 7.4 1.5 3.1 2 1 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Lipase_3 PF01764.25 gi|530549397|ref|YP_008429948.1| - 0.14 12.0 0.1 4.7 7.1 0.0 2.3 2 0 0 2 2 2 0 Lipase (class 3) UPF0184 PF03670.13 gi|530549397|ref|YP_008429948.1| - 0.16 12.4 0.1 0.34 11.3 0.1 1.5 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0184) HypA PF01155.19 gi|530549397|ref|YP_008429948.1| - 2 8.4 9.4 0.87 9.6 0.6 2.6 2 1 1 3 3 3 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-RING_7 PF02591.15 gi|530549397|ref|YP_008429948.1| - 2.9 8.2 12.8 6.3 7.1 0.1 3.9 4 0 0 4 4 3 0 C4-type zinc ribbon domain UPF0547 PF10571.9 gi|530549397|ref|YP_008429948.1| - 3.4 7.8 14.6 36 4.6 9.1 3.1 2 1 0 2 2 2 0 Uncharacterised protein family UPF0547 Virulence_fact PF13769.6 gi|530549397|ref|YP_008429948.1| - 7.3 6.9 7.4 10 6.4 0.6 2.3 2 0 0 2 2 2 0 Virulence factor Ribosomal_S8e PF01201.22 gi|530549398|ref|YP_008429949.1| - 5.2e-34 117.4 4.0 5.9e-34 117.2 4.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S8e DDE_Tnp_IS66 PF03050.14 gi|530549399|ref|YP_008429950.1| - 0.0042 16.6 0.0 0.0045 16.5 0.0 1.1 1 0 0 1 1 1 1 Transposase IS66 family DDE_Tnp_1 PF01609.21 gi|530549400|ref|YP_008429951.1| - 0.13 11.9 0.0 0.13 11.9 0.0 1.2 1 1 0 1 1 1 0 Transposase DDE domain CTP_synth_N PF06418.14 gi|530549402|ref|YP_008429953.1| - 2.2e-127 423.8 0.3 2.9e-127 423.5 0.3 1.1 1 0 0 1 1 1 1 CTP synthase N-terminus GATase PF00117.28 gi|530549402|ref|YP_008429953.1| - 4.5e-57 192.9 0.0 1.1e-56 191.7 0.0 1.6 2 0 0 2 2 2 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|530549402|ref|YP_008429953.1| - 1.3e-05 25.1 0.0 5.7e-05 23.0 0.0 2.1 2 1 0 2 2 2 1 Peptidase C26 CbiA PF01656.23 gi|530549402|ref|YP_008429953.1| - 0.028 14.5 0.0 0.048 13.7 0.0 1.7 2 1 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain Phage_integrase PF00589.22 gi|530549403|ref|YP_008429954.1| - 5.9e-16 58.7 0.0 1.4e-15 57.5 0.0 1.5 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_4 PF13495.6 gi|530549403|ref|YP_008429954.1| - 2.4e-05 24.7 1.7 0.00017 22.0 1.7 2.3 1 1 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.17 gi|530549403|ref|YP_008429954.1| - 0.0011 19.2 0.1 0.005 17.1 0.1 2.1 1 1 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain DUF2244 PF10003.9 gi|530549405|ref|YP_008429956.1| - 0.074 12.7 0.6 0.15 11.7 0.6 1.5 1 0 0 1 1 1 0 Integral membrane protein (DUF2244) DUF2706 PF10913.8 gi|530549405|ref|YP_008429956.1| - 0.49 10.3 2.1 2.9 7.8 2.1 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF2706) UMPH-1 PF05822.12 gi|530549406|ref|YP_008429957.1| - 0.095 12.2 0.0 0.19 11.2 0.0 1.4 1 0 0 1 1 1 0 Pyrimidine 5'-nucleotidase (UMPH-1) HTH_17 PF12728.7 gi|530549408|ref|YP_008429959.1| - 6.7e-14 51.8 0.1 8.2e-14 51.5 0.1 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.6 gi|530549408|ref|YP_008429959.1| - 0.0073 16.7 0.0 0.014 15.9 0.0 1.6 1 1 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_3 PF01381.22 gi|530549408|ref|YP_008429959.1| - 0.031 14.3 0.0 0.064 13.3 0.0 1.5 2 0 0 2 2 2 0 Helix-turn-helix Phage_Nu1 PF07471.12 gi|530549408|ref|YP_008429959.1| - 0.041 13.6 0.1 0.045 13.5 0.1 1.1 1 0 0 1 1 1 0 Phage DNA packaging protein Nu1 Terminase_5 PF06056.12 gi|530549408|ref|YP_008429959.1| - 0.062 13.2 0.1 0.082 12.8 0.1 1.3 1 0 0 1 1 1 0 Putative ATPase subunit of terminase (gpP-like) DUF1323 PF07037.11 gi|530549408|ref|YP_008429959.1| - 0.078 13.4 0.1 0.095 13.1 0.1 1.1 1 0 0 1 1 1 0 Putative transcription regulator (DUF1323) MerR PF00376.23 gi|530549408|ref|YP_008429959.1| - 0.082 12.7 0.0 0.18 11.6 0.0 1.6 2 0 0 2 2 2 0 MerR family regulatory protein MerR_1 PF13411.6 gi|530549408|ref|YP_008429959.1| - 0.1 12.7 0.1 0.16 12.1 0.1 1.4 1 0 0 1 1 1 0 MerR HTH family regulatory protein Get5_bdg PF16843.5 gi|530549408|ref|YP_008429959.1| - 0.14 11.7 0.1 0.28 10.7 0.0 1.6 2 0 0 2 2 2 0 Binding domain to Get4 on Get5, Golgi to ER traffic protein AbrB-like PF14250.6 gi|530549409|ref|YP_008429960.1| - 0.053 13.6 0.0 0.075 13.1 0.0 1.3 1 0 0 1 1 1 0 AbrB-like transcriptional regulator ABC_transp_aux PF09822.9 gi|530549410|ref|YP_008429961.1| - 2.7e-08 33.6 0.5 7.3e-08 32.2 0.3 1.8 2 0 0 2 2 2 1 ABC-type uncharacterized transport system ThuA PF06283.11 gi|530549410|ref|YP_008429961.1| - 9.3e-06 26.0 0.0 0.00014 22.1 0.0 2.7 2 1 0 2 2 2 1 Trehalose utilisation DDOST_48kD PF03345.14 gi|530549410|ref|YP_008429961.1| - 0.00034 19.6 0.0 0.00063 18.7 0.0 1.4 1 0 0 1 1 1 1 Oligosaccharyltransferase 48 kDa subunit beta DUF2194 PF09960.9 gi|530549410|ref|YP_008429961.1| - 0.00063 18.2 0.2 0.0012 17.3 0.2 1.3 1 0 0 1 1 1 1 Uncharacterised protein conserved in bacteria (DUF2194) TcdB_toxin_midN PF12256.8 gi|530549410|ref|YP_008429961.1| - 0.024 14.0 0.0 0.15 11.4 0.0 2.2 3 0 0 3 3 3 0 Insecticide toxin TcdB middle/N-terminal region DUF4350 PF14258.6 gi|530549410|ref|YP_008429961.1| - 0.087 13.3 0.0 0.23 11.9 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4350) LEA_2 PF03168.13 gi|530549411|ref|YP_008429962.1| - 2.8e-20 72.7 0.1 1.2e-10 41.8 0.0 2.4 2 0 0 2 2 2 2 Late embryogenesis abundant protein DNMT1-RFD PF12047.8 gi|530549411|ref|YP_008429962.1| - 0.058 13.4 1.9 0.13 12.3 0.2 2.2 3 0 0 3 3 3 0 Cytosine specific DNA methyltransferase replication foci domain Phage_integr_3 PF16795.5 gi|530549412|ref|YP_008429963.1| - 0.00021 21.2 0.1 0.00021 21.2 0.1 1.0 1 0 0 1 1 1 1 Archaeal phage integrase DDE_Tnp_IS240 PF13610.6 gi|530549413|ref|YP_008429964.1| - 9.6e-20 71.2 0.4 1.5e-19 70.6 0.4 1.3 1 0 0 1 1 1 1 DDE domain HTH_23 PF13384.6 gi|530549413|ref|YP_008429964.1| - 9.9e-06 25.2 0.1 9.9e-06 25.2 0.1 2.8 3 0 0 3 3 2 1 Homeodomain-like domain Sigma70_r4_2 PF08281.12 gi|530549413|ref|YP_008429964.1| - 4.5e-05 23.0 0.0 0.0001 21.9 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 rve PF00665.26 gi|530549413|ref|YP_008429964.1| - 6.2e-05 23.2 0.5 0.00041 20.5 0.5 2.1 1 1 0 1 1 1 1 Integrase core domain DDE_Tnp_IS66 PF03050.14 gi|530549413|ref|YP_008429964.1| - 0.0012 18.4 0.2 0.0019 17.8 0.1 1.4 1 1 0 1 1 1 1 Transposase IS66 family HTH_38 PF13936.6 gi|530549413|ref|YP_008429964.1| - 0.0016 18.1 0.0 0.0041 16.9 0.0 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain Terminase_5 PF06056.12 gi|530549413|ref|YP_008429964.1| - 0.0047 16.8 0.2 0.0047 16.8 0.2 2.3 3 0 0 3 3 3 1 Putative ATPase subunit of terminase (gpP-like) HTH_24 PF13412.6 gi|530549413|ref|YP_008429964.1| - 0.016 14.7 0.0 0.029 13.9 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding PAX PF00292.18 gi|530549413|ref|YP_008429964.1| - 0.018 15.0 0.1 0.025 14.5 0.1 1.1 1 0 0 1 1 1 0 'Paired box' domain HTH_28 PF13518.6 gi|530549413|ref|YP_008429964.1| - 0.034 14.3 0.2 0.09 12.9 0.2 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain GerE PF00196.19 gi|530549413|ref|YP_008429964.1| - 0.035 13.6 0.0 0.084 12.4 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family DDE_3 PF13358.6 gi|530549413|ref|YP_008429964.1| - 0.049 13.4 0.2 0.88 9.3 0.2 2.5 1 1 1 2 2 2 0 DDE superfamily endonuclease HTH_40 PF14493.6 gi|530549413|ref|YP_008429964.1| - 0.053 14.0 0.1 0.086 13.3 0.1 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_29 PF13551.6 gi|530549413|ref|YP_008429964.1| - 0.13 12.3 0.1 0.45 10.6 0.1 2.0 1 1 1 2 2 2 0 Winged helix-turn helix HTH_7 PF02796.15 gi|530549413|ref|YP_008429964.1| - 0.14 12.3 0.0 0.25 11.4 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_AsnC-type PF13404.6 gi|530549413|ref|YP_008429964.1| - 0.14 12.0 0.1 0.14 12.0 0.1 1.7 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain DDE_Tnp_1 PF01609.21 gi|530549413|ref|YP_008429964.1| - 1.7 8.2 4.3 6.1 6.4 3.0 2.1 2 0 0 2 2 2 0 Transposase DDE domain HTH_17 PF12728.7 gi|530549413|ref|YP_008429964.1| - 1.9 8.7 7.1 3.4 7.9 0.6 3.9 5 1 0 5 5 5 0 Helix-turn-helix domain Transglut_C PF00927.22 gi|530549415|ref|YP_008429966.1| - 0.034 14.3 0.0 0.26 11.4 0.0 2.0 1 1 0 1 1 1 0 Transglutaminase family, C-terminal ig like domain bPH_1 PF08000.11 gi|530549416|ref|YP_008429967.1| - 0.00074 19.6 0.1 0.0015 18.7 0.1 1.6 1 1 0 1 1 1 1 Bacterial PH domain bPH_3 PF14470.6 gi|530549416|ref|YP_008429967.1| - 0.0019 18.5 0.1 0.0022 18.3 0.1 1.1 1 0 0 1 1 1 1 Bacterial PH domain Knl1_RWD_C PF18210.1 gi|530549417|ref|YP_008429968.1| - 0.036 14.5 0.0 0.13 12.7 0.0 2.0 2 0 0 2 2 2 0 Knl1 RWD C-terminal domain CBP4 PF07960.11 gi|564287491|ref|YP_008429970.3| - 0.016 15.0 0.0 0.023 14.6 0.0 1.2 1 0 0 1 1 1 0 CBP4 RasGAP_C PF03836.15 gi|564287491|ref|YP_008429970.3| - 0.052 13.7 0.7 0.07 13.3 0.7 1.3 1 0 0 1 1 1 0 RasGAP C-terminus LepB_GAP_N PF18172.1 gi|530549421|ref|YP_008429972.1| - 0.0034 17.3 0.2 0.0065 16.4 0.2 1.4 1 0 0 1 1 1 1 LepB GAP domain N-terminal subdomain Gp_dh_C PF02800.20 gi|530549421|ref|YP_008429972.1| - 0.093 12.3 0.0 0.16 11.5 0.0 1.3 1 0 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DUF3368 PF11848.8 gi|530549422|ref|YP_008429973.1| - 0.28 11.0 1.1 0.37 10.6 0.1 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF3368) UPF0175 PF03683.13 gi|530549423|ref|YP_008429974.1| - 0.043 13.5 0.8 0.14 11.9 0.1 2.0 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0175) Nop PF01798.18 gi|530549423|ref|YP_008429974.1| - 0.12 11.8 0.0 0.15 11.5 0.0 1.2 1 0 0 1 1 1 0 snoRNA binding domain, fibrillarin PLU-1 PF08429.11 gi|530549424|ref|YP_008429975.1| - 0.044 12.9 0.1 0.63 9.2 0.1 2.0 1 1 0 1 1 1 0 PLU-1-like protein Lip_prot_lig_C PF10437.9 gi|530549424|ref|YP_008429975.1| - 0.086 12.8 2.6 2.9 7.9 0.2 2.7 2 1 0 2 2 2 0 Bacterial lipoate protein ligase C-terminus ENTH PF01417.20 gi|530549424|ref|YP_008429975.1| - 0.12 12.4 3.1 1.8 8.6 0.2 2.6 2 1 0 2 2 2 0 ENTH domain PhoU PF01895.19 gi|530549424|ref|YP_008429975.1| - 0.44 11.0 3.1 0.61 10.6 0.2 2.3 2 0 0 2 2 2 0 PhoU domain DUF3467 PF11950.8 gi|530549426|ref|YP_008429977.1| - 2e-12 47.1 0.0 3.3e-12 46.4 0.0 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF3467) BssS PF13991.6 gi|530549426|ref|YP_008429977.1| - 0.082 13.0 0.0 0.13 12.3 0.0 1.2 1 0 0 1 1 1 0 BssS protein family NYN PF01936.18 gi|530549427|ref|YP_008429978.1| - 4.5e-14 53.2 0.0 5.3e-14 52.9 0.0 1.1 1 0 0 1 1 1 1 NYN domain DUF919 PF06034.11 gi|530549428|ref|YP_008429979.1| - 0.022 14.6 1.5 2.9 7.8 0.4 2.3 2 1 0 2 2 2 0 Nucleopolyhedrovirus protein of unknown function (DUF919) CHD5 PF04420.14 gi|530549428|ref|YP_008429979.1| - 0.081 12.8 0.6 0.15 11.9 0.6 1.6 1 1 0 1 1 1 0 CHD5-like protein Vac_Fusion PF02346.16 gi|530549428|ref|YP_008429979.1| - 1.7 8.3 5.4 8.9 6.0 0.6 2.4 3 0 0 3 3 3 0 Chordopoxvirus multifunctional envelope protein A27 DUF555 PF04475.12 gi|530549429|ref|YP_008429980.1| - 6.2e-42 142.0 0.7 7.8e-42 141.7 0.7 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF555) FdhE PF04216.12 gi|530549429|ref|YP_008429980.1| - 0.046 13.6 0.0 0.069 13.0 0.0 1.2 1 0 0 1 1 1 0 Protein involved in formate dehydrogenase formation Rad50_zn_hook PF04423.14 gi|530549429|ref|YP_008429980.1| - 0.049 13.5 0.1 0.14 12.0 0.1 1.8 1 0 0 1 1 1 0 Rad50 zinc hook motif DNA_ligase_ZBD PF03119.16 gi|530549429|ref|YP_008429980.1| - 0.077 13.0 0.9 0.16 12.0 0.9 1.6 1 0 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain ArgJ PF01960.18 gi|530549429|ref|YP_008429980.1| - 0.099 11.4 0.8 1.6 7.4 0.1 2.0 2 0 0 2 2 2 0 ArgJ family DUF357 PF04010.13 gi|530549430|ref|YP_008429981.1| - 1.4e-29 101.9 2.0 1.7e-29 101.7 2.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF357) DNA_methylase PF00145.17 gi|530549431|ref|YP_008429982.1| - 6.5e-51 173.7 0.0 1.3e-48 166.1 0.0 2.0 1 1 0 1 1 1 1 C-5 cytosine-specific DNA methylase Methyltransf_15 PF09445.10 gi|530549431|ref|YP_008429982.1| - 0.035 13.7 0.0 0.051 13.1 0.0 1.3 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase AAA_15 PF13175.6 gi|530549432|ref|YP_008429983.1| - 4.7e-27 95.6 9.8 4.4e-26 92.5 9.8 2.1 1 1 0 1 1 1 1 AAA ATPase domain AAA_21 PF13304.6 gi|530549432|ref|YP_008429983.1| - 4.7e-24 85.7 6.1 1.5e-22 80.8 6.1 2.5 1 1 0 1 1 1 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|530549432|ref|YP_008429983.1| - 1e-13 52.3 1.0 1e-13 52.3 1.0 1.7 2 0 0 2 2 2 1 AAA domain SMC_N PF02463.19 gi|530549432|ref|YP_008429983.1| - 8.9e-12 44.9 0.0 5.7e-11 42.3 0.0 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain DUF2813 PF11398.8 gi|530549432|ref|YP_008429983.1| - 1.5e-09 37.6 0.2 8.3e-06 25.3 0.0 2.4 2 0 0 2 2 2 2 Protein of unknown function (DUF2813) AAA_29 PF13555.6 gi|530549432|ref|YP_008429983.1| - 5e-06 26.2 0.0 9.2e-06 25.3 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_27 PF13514.6 gi|530549432|ref|YP_008429983.1| - 0.0018 17.9 0.0 0.0035 16.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_13 PF13166.6 gi|530549432|ref|YP_008429983.1| - 0.011 14.5 0.6 1.4 7.5 0.0 2.4 2 0 0 2 2 2 0 AAA domain ABC_tran PF00005.27 gi|530549432|ref|YP_008429983.1| - 0.077 13.5 0.0 0.17 12.4 0.0 1.7 1 0 0 1 1 1 0 ABC transporter SPOB_a PF14689.6 gi|530549432|ref|YP_008429983.1| - 0.09 12.5 0.4 0.82 9.4 0.0 2.8 2 0 0 2 2 2 0 Sensor_kinase_SpoOB-type, alpha-helical domain AAA_25 PF13481.6 gi|530549432|ref|YP_008429983.1| - 0.099 12.2 0.0 0.2 11.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain DUF763 PF05559.11 gi|530549435|ref|YP_008429986.1| - 1.9e-115 385.4 0.0 2.3e-115 385.1 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF763) HHH PF00633.23 gi|530549435|ref|YP_008429986.1| - 0.025 14.4 0.0 1.3 9.0 0.0 2.7 2 0 0 2 2 2 0 Helix-hairpin-helix motif RNase_P_Rpp14 PF01900.19 gi|530549436|ref|YP_008429987.1| - 3.8e-24 84.9 0.1 4.3e-24 84.7 0.1 1.0 1 0 0 1 1 1 1 Rpp14/Pop5 family Proteasome PF00227.26 gi|530549438|ref|YP_008429989.1| - 1.6e-69 233.2 2.8 3.5e-69 232.1 0.0 2.0 2 0 0 2 2 2 1 Proteasome subunit Proteasome_A_N PF10584.9 gi|530549438|ref|YP_008429989.1| - 4.8e-13 48.5 0.8 1.2e-12 47.2 0.2 1.9 2 0 0 2 2 2 1 Proteasome subunit A N-terminal signature Peptidase_M22 PF00814.25 gi|530549438|ref|YP_008429989.1| - 0.068 12.9 0.1 5.1 6.7 0.0 2.4 2 1 0 2 2 2 0 Glycoprotease family ATP-cone PF03477.16 gi|530549438|ref|YP_008429989.1| - 0.15 12.6 2.7 0.16 12.5 1.4 1.7 2 1 0 2 2 2 0 ATP cone domain KH_6 PF15985.5 gi|530549439|ref|YP_008429990.1| - 3e-09 37.1 2.2 7.4e-09 35.8 0.8 2.1 2 0 0 2 2 2 1 KH domain KH_1 PF00013.29 gi|530549439|ref|YP_008429990.1| - 8e-07 28.8 0.2 1.6e-06 27.8 0.2 1.5 1 0 0 1 1 1 1 KH domain ECR1_N PF14382.6 gi|530549439|ref|YP_008429990.1| - 2.4e-06 27.2 0.1 4e-06 26.5 0.1 1.4 1 0 0 1 1 1 1 Exosome complex exonuclease RRP4 N-terminal region KH_2 PF07650.17 gi|530549439|ref|YP_008429990.1| - 7.1e-06 25.8 2.3 8.3e-06 25.5 0.7 2.0 2 0 0 2 2 2 1 KH domain KH_4 PF13083.6 gi|530549439|ref|YP_008429990.1| - 0.027 14.3 0.1 0.065 13.1 0.1 1.6 1 0 0 1 1 1 0 KH domain RNase_PH PF01138.21 gi|530549440|ref|YP_008429991.1| - 5.9e-36 123.9 0.0 9e-36 123.3 0.0 1.3 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.15 gi|530549440|ref|YP_008429991.1| - 7.6e-17 61.1 0.3 1.4e-16 60.3 0.3 1.4 1 0 0 1 1 1 1 3' exoribonuclease family, domain 2 Pinin_SDK_N PF04697.13 gi|530549440|ref|YP_008429991.1| - 0.094 13.4 0.1 0.19 12.4 0.1 1.4 1 0 0 1 1 1 0 pinin/SDK conserved region RNase_PH PF01138.21 gi|530549441|ref|YP_008429992.1| - 1.3e-29 103.4 0.0 2e-29 102.7 0.0 1.3 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.15 gi|530549441|ref|YP_008429992.1| - 2.1e-15 56.5 0.3 7.2e-15 54.8 0.0 2.0 2 0 0 2 2 2 1 3' exoribonuclease family, domain 2 2TM PF13239.6 gi|530549443|ref|YP_008429994.1| - 0.13 12.6 8.3 0.11 12.8 6.2 2.0 1 1 0 1 1 1 0 2TM domain Adipogenin PF15202.6 gi|530549443|ref|YP_008429994.1| - 0.79 9.8 5.6 1.5 8.9 3.9 2.0 1 1 1 2 2 2 0 Adipogenin Ribosomal_L37ae PF01780.19 gi|530549445|ref|YP_008429996.1| - 3.7e-35 119.9 5.1 4e-35 119.8 5.1 1.0 1 0 0 1 1 1 1 Ribosomal L37ae protein family Zn_Tnp_IS1595 PF12760.7 gi|530549445|ref|YP_008429996.1| - 6.7e-06 26.0 3.2 1e-05 25.4 3.2 1.3 1 0 0 1 1 1 1 Transposase zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|530549445|ref|YP_008429996.1| - 0.00012 22.0 0.8 0.00016 21.5 0.8 1.2 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Rep_fac-A_C PF08646.10 gi|530549445|ref|YP_008429996.1| - 0.00075 19.3 0.4 0.00089 19.0 0.4 1.1 1 0 0 1 1 1 1 Replication factor-A C terminal domain Zn-ribbon_8 PF09723.10 gi|530549445|ref|YP_008429996.1| - 0.0009 19.3 2.0 0.098 12.8 0.4 2.2 2 0 0 2 2 2 1 Zinc ribbon domain Lar_restr_allev PF14354.6 gi|530549445|ref|YP_008429996.1| - 0.0037 17.6 0.5 0.0054 17.1 0.5 1.3 1 0 0 1 1 1 1 Restriction alleviation protein Lar C1_1 PF00130.22 gi|530549445|ref|YP_008429996.1| - 0.0069 16.3 1.7 0.0093 15.8 1.7 1.1 1 0 0 1 1 1 1 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-H2C2_2 PF13465.6 gi|530549445|ref|YP_008429996.1| - 0.017 15.5 2.9 5.3 7.7 2.9 2.2 1 1 0 1 1 1 0 Zinc-finger double domain zf-RRN7 PF11781.8 gi|530549445|ref|YP_008429996.1| - 0.02 14.6 0.4 0.032 13.9 0.4 1.4 1 0 0 1 1 1 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Elf1 PF05129.13 gi|530549445|ref|YP_008429996.1| - 0.026 14.6 2.5 0.047 13.7 2.5 1.4 1 1 0 1 1 1 0 Transcription elongation factor Elf1 like RPA_interact_C PF14768.6 gi|530549445|ref|YP_008429996.1| - 0.029 14.9 0.1 0.039 14.5 0.1 1.2 1 0 0 1 1 1 0 Replication protein A interacting C-terminal ADK_lid PF05191.14 gi|530549445|ref|YP_008429996.1| - 0.032 14.2 0.5 3.9 7.5 0.0 2.2 2 0 0 2 2 2 0 Adenylate kinase, active site lid DNA_ligase_ZBD PF03119.16 gi|530549445|ref|YP_008429996.1| - 0.036 14.1 2.4 0.072 13.1 2.4 1.5 1 1 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain Ogr_Delta PF04606.12 gi|530549445|ref|YP_008429996.1| - 0.047 13.7 3.3 1.9 8.6 3.3 2.2 1 1 0 1 1 1 0 Ogr/Delta-like zinc finger TF_Zn_Ribbon PF08271.12 gi|530549445|ref|YP_008429996.1| - 0.052 13.1 0.7 0.14 11.7 0.9 1.6 1 1 1 2 2 2 0 TFIIB zinc-binding Rad50_zn_hook PF04423.14 gi|530549445|ref|YP_008429996.1| - 0.062 13.2 0.2 0.09 12.6 0.2 1.3 1 0 0 1 1 1 0 Rad50 zinc hook motif zf-C2H2 PF00096.26 gi|530549445|ref|YP_008429996.1| - 0.065 13.7 1.3 7.8 7.2 0.1 2.3 2 0 0 2 2 2 0 Zinc finger, C2H2 type A2L_zn_ribbon PF08792.10 gi|530549445|ref|YP_008429996.1| - 0.067 12.9 2.3 0.26 11.1 2.3 1.8 1 1 0 1 1 1 0 A2L zinc ribbon domain zf-C2H2_3 PF13878.6 gi|530549445|ref|YP_008429996.1| - 0.076 12.8 0.7 13 5.7 0.0 2.2 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO DUF4379 PF14311.6 gi|530549445|ref|YP_008429996.1| - 0.1 13.0 1.8 3.1 8.2 0.1 2.2 2 0 0 2 2 2 0 Probable Zinc-ribbon domain zf-C2H2_4 PF13894.6 gi|530549445|ref|YP_008429996.1| - 0.11 13.4 1.3 15 6.7 0.1 2.3 2 0 0 2 2 2 0 C2H2-type zinc finger DZR PF12773.7 gi|530549445|ref|YP_008429996.1| - 0.16 12.0 2.9 1.3 9.1 3.2 1.8 1 1 1 2 2 2 0 Double zinc ribbon NOB1_Zn_bind PF08772.11 gi|530549445|ref|YP_008429996.1| - 0.19 11.9 3.3 0.19 11.9 0.7 1.9 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zf-C2HC_2 PF13913.6 gi|530549445|ref|YP_008429996.1| - 0.2 11.6 5.7 1.7 8.6 1.0 2.3 2 0 0 2 2 2 0 zinc-finger of a C2HC-type zf-RING_13 PF17977.1 gi|530549445|ref|YP_008429996.1| - 0.2 11.8 3.1 0.26 11.5 3.1 1.2 1 0 0 1 1 1 0 RING/Ubox like zinc-binding domain zf-C2H2_6 PF13912.6 gi|530549445|ref|YP_008429996.1| - 0.2 11.7 2.6 7 6.8 0.1 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger zf_UBZ PF18439.1 gi|530549445|ref|YP_008429996.1| - 0.26 10.9 0.9 4.5 6.9 0.0 2.2 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger HalOD2 PF18547.1 gi|530549445|ref|YP_008429996.1| - 0.27 11.2 5.1 0.57 10.1 5.1 1.7 1 1 0 1 1 1 0 Halobacterial output domain 2 Rubredoxin_2 PF18073.1 gi|530549445|ref|YP_008429996.1| - 0.31 10.8 4.3 0.64 9.8 0.6 2.1 2 0 0 2 2 2 0 Rubredoxin metal binding domain zinc_ribbon_2 PF13240.6 gi|530549445|ref|YP_008429996.1| - 0.34 10.7 3.7 8.1 6.3 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Nudix_N_2 PF14803.6 gi|530549445|ref|YP_008429996.1| - 0.48 10.4 4.9 4.8 7.2 1.1 2.6 2 1 1 3 3 3 0 Nudix N-terminal zf-C2H2_11 PF16622.5 gi|530549445|ref|YP_008429996.1| - 0.67 9.8 0.2 0.67 9.8 0.2 2.0 2 0 0 2 2 2 0 zinc-finger C2H2-type zf-tcix PF14952.6 gi|530549445|ref|YP_008429996.1| - 0.91 9.2 6.2 0.62 9.7 0.4 2.5 1 1 1 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding CpXC PF14353.6 gi|530549445|ref|YP_008429996.1| - 0.94 9.5 3.7 11 6.1 0.2 2.2 1 1 1 2 2 2 0 CpXC protein Prim_Zn_Ribbon PF08273.12 gi|530549445|ref|YP_008429996.1| - 1 9.7 7.6 4.3 7.7 7.6 1.9 1 1 0 1 1 1 0 Zinc-binding domain of primase-helicase DNA_RNApol_7kD PF03604.13 gi|530549446|ref|YP_008429997.1| - 4.8e-09 35.7 6.0 7.2e-09 35.2 6.0 1.3 1 0 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit Zn-ribbon_8 PF09723.10 gi|530549446|ref|YP_008429997.1| - 1.3e-05 25.2 0.5 1.9e-05 24.7 0.5 1.2 1 0 0 1 1 1 1 Zinc ribbon domain zf-ribbon_3 PF13248.6 gi|530549446|ref|YP_008429997.1| - 9.3e-05 21.7 3.2 0.0062 15.9 0.1 2.1 2 0 0 2 2 2 1 zinc-ribbon domain HypA PF01155.19 gi|530549446|ref|YP_008429997.1| - 0.00019 21.4 0.3 0.0002 21.3 0.3 1.1 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Cys_rich_CPXG PF14255.6 gi|530549446|ref|YP_008429997.1| - 0.00068 19.5 1.0 0.26 11.2 0.4 2.1 2 0 0 2 2 2 1 Cysteine-rich CPXCG Zn_ribbon_SprT PF17283.2 gi|530549446|ref|YP_008429997.1| - 0.00089 19.1 1.6 0.0011 18.8 0.8 1.6 1 1 1 2 2 2 2 SprT-like zinc ribbon domain Ogr_Delta PF04606.12 gi|530549446|ref|YP_008429997.1| - 0.00099 19.0 0.4 0.61 10.1 0.2 2.1 2 0 0 2 2 2 2 Ogr/Delta-like zinc finger zf_UBZ PF18439.1 gi|530549446|ref|YP_008429997.1| - 0.0011 18.5 0.9 0.052 13.1 0.0 2.1 2 0 0 2 2 2 1 Ubiquitin-Binding Zinc Finger DZR PF12773.7 gi|530549446|ref|YP_008429997.1| - 0.0016 18.5 0.6 0.0024 17.8 0.6 1.4 1 1 0 1 1 1 1 Double zinc ribbon DUF951 PF06107.11 gi|530549446|ref|YP_008429997.1| - 0.0026 17.6 1.5 0.067 13.1 0.1 2.0 1 1 1 2 2 2 1 Bacterial protein of unknown function (DUF951) zinc_ribbon_2 PF13240.6 gi|530549446|ref|YP_008429997.1| - 0.0032 17.2 5.8 0.083 12.6 0.1 2.1 2 0 0 2 2 2 1 zinc-ribbon domain DUF4379 PF14311.6 gi|530549446|ref|YP_008429997.1| - 0.0033 17.7 0.2 0.0047 17.3 0.2 1.3 1 0 0 1 1 1 1 Probable Zinc-ribbon domain zf-C2HC_2 PF13913.6 gi|530549446|ref|YP_008429997.1| - 0.0043 16.9 2.3 0.85 9.6 0.0 2.2 2 0 0 2 2 2 1 zinc-finger of a C2HC-type zf-H2C2_2 PF13465.6 gi|530549446|ref|YP_008429997.1| - 0.0045 17.3 3.1 0.23 11.9 0.5 2.1 2 0 0 2 2 2 1 Zinc-finger double domain TFIIS_C PF01096.18 gi|530549446|ref|YP_008429997.1| - 0.0049 16.7 2.6 0.2 11.6 0.3 2.1 2 0 0 2 2 2 1 Transcription factor S-II (TFIIS) CpXC PF14353.6 gi|530549446|ref|YP_008429997.1| - 0.0052 16.8 1.4 1.3 9.0 0.1 2.1 1 1 1 2 2 2 2 CpXC protein zinc_ribbon_4 PF13717.6 gi|530549446|ref|YP_008429997.1| - 0.0083 16.0 3.0 0.28 11.1 3.0 2.2 1 1 0 1 1 1 1 zinc-ribbon domain FYVE PF01363.21 gi|530549446|ref|YP_008429997.1| - 0.011 15.9 0.2 0.011 15.9 0.2 1.1 1 0 0 1 1 1 0 FYVE zinc finger zf-C2H2_6 PF13912.6 gi|530549446|ref|YP_008429997.1| - 0.011 15.7 2.5 0.17 11.9 0.2 2.1 2 0 0 2 2 2 0 C2H2-type zinc finger Zn_Tnp_IS1595 PF12760.7 gi|530549446|ref|YP_008429997.1| - 0.012 15.6 2.4 1.3 9.0 0.1 2.1 2 0 0 2 2 2 0 Transposase zinc-ribbon domain zinc_ribbon_5 PF13719.6 gi|530549446|ref|YP_008429997.1| - 0.012 15.3 2.4 1.4 8.7 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-C2H2 PF00096.26 gi|530549446|ref|YP_008429997.1| - 0.013 16.0 4.4 0.44 11.1 0.9 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type Prok-RING_1 PF14446.6 gi|530549446|ref|YP_008429997.1| - 0.014 15.3 1.2 0.023 14.6 1.2 1.4 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 zf-C3HC4_3 PF13920.6 gi|530549446|ref|YP_008429997.1| - 0.016 15.0 1.1 0.021 14.7 1.1 1.1 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) TF_Zn_Ribbon PF08271.12 gi|530549446|ref|YP_008429997.1| - 0.018 14.5 1.2 0.039 13.5 1.2 1.5 1 1 0 1 1 1 0 TFIIB zinc-binding DUF3268 PF11672.8 gi|530549446|ref|YP_008429997.1| - 0.018 15.3 0.4 0.24 11.8 0.0 2.0 2 0 0 2 2 2 0 zinc-finger-containing domain zf-AN1 PF01428.16 gi|530549446|ref|YP_008429997.1| - 0.021 15.0 0.7 3.1 8.0 0.1 2.1 2 0 0 2 2 2 0 AN1-like Zinc finger OrfB_Zn_ribbon PF07282.11 gi|530549446|ref|YP_008429997.1| - 0.023 14.6 1.0 0.065 13.2 1.1 1.6 1 1 1 2 2 2 0 Putative transposase DNA-binding domain zf-C2H2_4 PF13894.6 gi|530549446|ref|YP_008429997.1| - 0.024 15.5 1.5 4 8.6 0.1 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger zf-NADH-PPase PF09297.11 gi|530549446|ref|YP_008429997.1| - 0.025 14.2 0.3 0.063 13.0 0.4 1.6 1 1 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain zf-C4_Topoisom PF01396.19 gi|530549446|ref|YP_008429997.1| - 0.026 14.3 2.9 0.18 11.6 0.2 2.1 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zinc-ribbons_6 PF07191.12 gi|530549446|ref|YP_008429997.1| - 0.032 14.2 0.8 0.06 13.3 0.8 1.4 1 1 0 1 1 1 0 zinc-ribbons zf-C2HC5 PF06221.13 gi|530549446|ref|YP_008429997.1| - 0.035 14.1 0.7 0.062 13.3 0.7 1.5 1 1 0 1 1 1 0 Putative zinc finger motif, C2HC5-type YacG PF03884.14 gi|530549446|ref|YP_008429997.1| - 0.036 13.8 0.5 0.89 9.3 0.1 2.1 2 0 0 2 2 2 0 DNA gyrase inhibitor YacG UPF0547 PF10571.9 gi|530549446|ref|YP_008429997.1| - 0.037 14.1 1.8 6.1 7.0 0.2 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 DUF2072 PF09845.9 gi|530549446|ref|YP_008429997.1| - 0.039 14.2 0.4 0.043 14.1 0.4 1.1 1 0 0 1 1 1 0 Zn-ribbon containing protein YhfH PF14149.6 gi|530549446|ref|YP_008429997.1| - 0.055 13.4 2.8 1.7 8.7 0.4 2.1 2 0 0 2 2 2 0 YhfH-like protein zf-BED PF02892.15 gi|530549446|ref|YP_008429997.1| - 0.062 13.3 2.5 2.4 8.2 0.2 2.1 1 1 1 2 2 2 0 BED zinc finger NinF PF05810.12 gi|530549446|ref|YP_008429997.1| - 0.063 13.1 0.3 0.091 12.6 0.3 1.3 1 1 0 1 1 1 0 NinF protein Zn_ribbon_recom PF13408.6 gi|530549446|ref|YP_008429997.1| - 0.066 13.7 4.5 0.34 11.4 0.3 2.1 1 1 1 2 2 2 0 Recombinase zinc beta ribbon domain zf-CHCC PF10276.9 gi|530549446|ref|YP_008429997.1| - 0.08 13.0 2.2 0.15 12.1 0.1 2.0 2 0 0 2 2 2 0 Zinc-finger domain zinc_ribbon_10 PF10058.9 gi|530549446|ref|YP_008429997.1| - 0.086 12.6 1.0 8.7 6.2 0.1 2.1 2 0 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein FYDLN_acid PF09538.10 gi|530549446|ref|YP_008429997.1| - 0.1 13.3 0.8 0.14 12.9 0.8 1.2 1 0 0 1 1 1 0 Protein of unknown function (FYDLN_acid) zf-Di19 PF05605.12 gi|530549446|ref|YP_008429997.1| - 0.11 12.8 1.0 0.99 9.7 0.2 2.0 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding Desulfoferrod_N PF06397.12 gi|530549446|ref|YP_008429997.1| - 0.14 11.8 2.1 0.82 9.3 0.2 2.1 2 0 0 2 2 2 0 Desulfoferrodoxin, N-terminal domain zf-tcix PF14952.6 gi|530549446|ref|YP_008429997.1| - 0.32 10.7 6.8 4.9 6.9 0.1 2.8 3 0 0 3 3 3 0 Putative treble-clef, zinc-finger, Zn-binding PyrI_C PF02748.15 gi|530549446|ref|YP_008429997.1| - 0.36 10.8 4.9 1.2 9.1 0.3 2.1 1 1 1 2 2 2 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain Pcc1 PF09341.10 gi|530549448|ref|YP_008429999.1| - 6.5e-15 55.0 0.0 7e-15 54.9 0.0 1.0 1 0 0 1 1 1 1 Transcription factor Pcc1 Myb_DNA-bind_5 PF13873.6 gi|530549448|ref|YP_008429999.1| - 0.021 14.9 0.0 0.036 14.2 0.0 1.4 1 0 0 1 1 1 0 Myb/SANT-like DNA-binding domain Prefoldin_2 PF01920.20 gi|530549449|ref|YP_008430000.1| - 5.2e-23 81.0 20.2 6e-23 80.8 20.2 1.0 1 0 0 1 1 1 1 Prefoldin subunit FPP PF05911.11 gi|530549449|ref|YP_008430000.1| - 0.00046 18.5 12.9 0.00055 18.3 12.9 1.0 1 0 0 1 1 1 1 Filament-like plant protein, long coiled-coil CENP-F_leu_zip PF10473.9 gi|530549449|ref|YP_008430000.1| - 0.0015 18.6 14.1 0.039 14.0 4.8 2.0 2 0 0 2 2 2 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 HlyD_2 PF12700.7 gi|530549449|ref|YP_008430000.1| - 0.002 17.0 9.0 0.0025 16.6 9.0 1.0 1 0 0 1 1 1 1 HlyD family secretion protein FlaC_arch PF05377.11 gi|530549449|ref|YP_008430000.1| - 0.0045 17.3 12.3 0.007 16.7 4.3 2.6 2 1 0 2 2 2 1 Flagella accessory protein C (FlaC) CdvA PF18822.1 gi|530549449|ref|YP_008430000.1| - 0.011 15.6 15.1 0.052 13.4 1.3 2.4 2 1 0 2 2 2 0 CdvA-like coiled-coil domain XhlA PF10779.9 gi|530549449|ref|YP_008430000.1| - 0.011 15.9 5.7 0.011 15.9 5.7 2.2 2 0 0 2 2 2 0 Haemolysin XhlA AAA_11 PF13086.6 gi|530549449|ref|YP_008430000.1| - 0.013 15.4 5.2 0.014 15.2 5.2 1.0 1 0 0 1 1 1 0 AAA domain DUF3416 PF11896.8 gi|530549449|ref|YP_008430000.1| - 0.014 15.7 1.3 0.019 15.2 1.3 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3416) ALIX_LYPXL_bnd PF13949.6 gi|530549449|ref|YP_008430000.1| - 0.019 14.3 8.1 0.024 13.9 8.1 1.1 1 0 0 1 1 1 0 ALIX V-shaped domain binding to HIV DUF3584 PF12128.8 gi|530549449|ref|YP_008430000.1| - 0.024 12.2 9.4 0.028 12.0 9.4 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) DHR10 PF18595.1 gi|530549449|ref|YP_008430000.1| - 0.026 14.6 22.4 0.43 10.6 22.4 2.0 1 1 0 1 1 1 0 Designed helical repeat protein 10 domain ADIP PF11559.8 gi|530549449|ref|YP_008430000.1| - 0.03 14.4 5.6 0.03 14.4 5.6 2.1 2 0 0 2 2 2 0 Afadin- and alpha -actinin-Binding DUF3450 PF11932.8 gi|530549449|ref|YP_008430000.1| - 0.03 13.6 16.4 0.029 13.7 5.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3450) FUSC PF04632.12 gi|530549449|ref|YP_008430000.1| - 0.032 12.8 1.2 0.033 12.7 1.2 1.0 1 0 0 1 1 1 0 Fusaric acid resistance protein family DUF4404 PF14357.6 gi|530549449|ref|YP_008430000.1| - 0.04 14.6 10.3 0.75 10.5 0.5 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4404) MCM_N PF14551.6 gi|530549449|ref|YP_008430000.1| - 0.042 14.4 1.8 1.5 9.5 0.1 2.1 2 0 0 2 2 2 0 MCM N-terminal domain DUF2120 PF09893.9 gi|530549449|ref|YP_008430000.1| - 0.044 13.9 6.7 0.032 14.4 3.6 1.8 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2120) V_ATPase_I PF01496.19 gi|530549449|ref|YP_008430000.1| - 0.045 11.7 6.2 0.066 11.1 6.2 1.3 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family Prominin PF05478.11 gi|530549449|ref|YP_008430000.1| - 0.059 11.3 9.7 0.09 10.7 9.7 1.2 1 1 0 1 1 1 0 Prominin Laminin_II PF06009.12 gi|530549449|ref|YP_008430000.1| - 0.066 13.2 13.8 0.1 12.6 13.6 1.4 1 1 1 2 2 2 0 Laminin Domain II DUF4407 PF14362.6 gi|530549449|ref|YP_008430000.1| - 0.069 12.5 6.9 0.077 12.3 6.9 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) DUF4988 PF16378.5 gi|530549449|ref|YP_008430000.1| - 0.071 12.8 1.2 0.071 12.8 1.2 1.9 2 0 0 2 2 2 0 Domain of unknown function Ead_Ea22 PF13935.6 gi|530549449|ref|YP_008430000.1| - 0.095 13.4 10.7 0.87 10.2 10.7 2.0 1 1 0 1 1 1 0 Ead/Ea22-like protein PilJ PF13675.6 gi|530549449|ref|YP_008430000.1| - 0.11 12.5 7.4 0.11 12.5 0.8 2.1 1 1 1 2 2 2 0 Type IV pili methyl-accepting chemotaxis transducer N-term Spc7 PF08317.11 gi|530549449|ref|YP_008430000.1| - 0.12 11.3 19.4 1.1 8.0 19.4 1.9 1 1 0 1 1 1 0 Spc7 kinetochore protein SRP54 PF00448.22 gi|530549449|ref|YP_008430000.1| - 0.13 11.9 4.8 0.16 11.6 4.8 1.1 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain TolA_bind_tri PF16331.5 gi|530549449|ref|YP_008430000.1| - 0.13 12.3 16.2 0.63 10.2 5.3 2.2 2 0 0 2 2 2 0 TolA binding protein trimerisation APG6_N PF17675.1 gi|530549449|ref|YP_008430000.1| - 0.14 12.7 20.4 1 9.9 9.6 2.0 2 0 0 2 2 2 0 Apg6 coiled-coil region NPV_P10 PF05531.12 gi|530549449|ref|YP_008430000.1| - 0.17 12.4 9.7 0.37 11.3 0.8 2.3 2 0 0 2 2 2 0 Nucleopolyhedrovirus P10 protein OmpH PF03938.14 gi|530549449|ref|YP_008430000.1| - 0.17 12.2 16.3 0.25 11.7 16.3 1.2 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) Prefoldin PF02996.17 gi|530549449|ref|YP_008430000.1| - 0.18 11.7 17.8 0.23 11.4 6.9 2.3 1 1 1 2 2 2 0 Prefoldin subunit Exonuc_VII_L PF02601.15 gi|530549449|ref|YP_008430000.1| - 0.19 11.3 6.6 0.22 11.0 6.6 1.1 1 0 0 1 1 1 0 Exonuclease VII, large subunit YabA PF06156.13 gi|530549449|ref|YP_008430000.1| - 0.19 12.4 14.2 0.33 11.6 2.7 2.1 1 1 1 2 2 2 0 Initiation control protein YabA DASH_Dam1 PF08653.10 gi|530549449|ref|YP_008430000.1| - 0.2 11.5 2.9 0.22 11.4 0.3 2.3 2 2 0 2 2 2 0 DASH complex subunit Dam1 Filament PF00038.21 gi|530549449|ref|YP_008430000.1| - 0.21 11.2 16.3 2.3 7.7 16.4 1.9 1 1 0 1 1 1 0 Intermediate filament protein FapA PF03961.13 gi|530549449|ref|YP_008430000.1| - 0.3 9.6 10.3 0.38 9.3 10.3 1.2 1 0 0 1 1 1 0 Flagellar Assembly Protein A T3SSipB PF16535.5 gi|530549449|ref|YP_008430000.1| - 0.31 11.5 9.1 0.19 12.2 1.4 2.0 1 1 1 2 2 2 0 Type III cell invasion protein SipB Baculo_PEP_C PF04513.12 gi|530549449|ref|YP_008430000.1| - 0.45 10.5 10.3 0.25 11.4 1.7 2.1 1 1 0 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus Seryl_tRNA_N PF02403.22 gi|530549449|ref|YP_008430000.1| - 0.46 10.7 17.4 0.17 12.1 6.7 2.1 1 1 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain AAA_13 PF13166.6 gi|530549449|ref|YP_008430000.1| - 0.52 8.9 12.3 1 7.9 12.3 1.5 1 1 0 1 1 1 0 AAA domain NPL PF17800.1 gi|530549449|ref|YP_008430000.1| - 0.6 10.7 2.6 0.45 11.1 0.4 1.8 1 1 1 2 2 2 0 Nucleoplasmin-like domain YscO PF07321.12 gi|530549449|ref|YP_008430000.1| - 0.63 10.0 20.7 0.98 9.4 5.4 2.1 1 1 0 2 2 2 0 Type III secretion protein YscO COG2 PF06148.11 gi|530549449|ref|YP_008430000.1| - 0.64 10.1 8.0 6 7.0 1.9 2.2 2 0 0 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 TPR_MLP1_2 PF07926.12 gi|530549449|ref|YP_008430000.1| - 0.66 10.0 20.5 0.44 10.6 8.0 2.1 1 1 0 2 2 2 0 TPR/MLP1/MLP2-like protein PilO PF04350.13 gi|530549449|ref|YP_008430000.1| - 0.69 10.1 11.2 2.4 8.3 1.4 2.3 2 0 0 2 2 2 0 Pilus assembly protein, PilO Spc24 PF08286.11 gi|530549449|ref|YP_008430000.1| - 0.75 10.1 16.3 0.95 9.7 5.9 2.2 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 Laminin_I PF06008.14 gi|530549449|ref|YP_008430000.1| - 0.77 9.4 16.2 2.8 7.6 4.9 2.0 1 1 0 2 2 2 0 Laminin Domain I DUF1664 PF07889.12 gi|530549449|ref|YP_008430000.1| - 0.79 9.8 10.9 6.7 6.8 10.9 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF1664) PI3K_P85_iSH2 PF16454.5 gi|530549449|ref|YP_008430000.1| - 0.82 9.3 16.4 18 4.9 16.6 2.0 1 1 0 1 1 1 0 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain GAS PF13851.6 gi|530549449|ref|YP_008430000.1| - 0.84 9.0 19.4 12 5.2 19.5 1.9 1 1 0 1 1 1 0 Growth-arrest specific micro-tubule binding DUF3958 PF13125.6 gi|530549449|ref|YP_008430000.1| - 0.88 9.8 15.7 1.4 9.2 15.7 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3958) Sec34 PF04136.15 gi|530549449|ref|YP_008430000.1| - 0.89 9.4 12.3 2.5 8.0 1.9 2.1 1 1 0 2 2 2 0 Sec34-like family DUF4618 PF15397.6 gi|530549449|ref|YP_008430000.1| - 1.1 8.6 18.7 0.22 10.9 6.1 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4618) FACT-Spt16_Nlob PF14826.6 gi|530549449|ref|YP_008430000.1| - 1.1 9.0 7.1 0.34 10.7 2.9 1.8 1 1 1 2 2 2 0 FACT complex subunit SPT16 N-terminal lobe domain Tektin PF03148.14 gi|530549449|ref|YP_008430000.1| - 1.1 7.9 15.1 2 7.1 5.0 2.0 2 0 0 2 2 2 0 Tektin family DUF948 PF06103.11 gi|530549449|ref|YP_008430000.1| - 1.3 9.4 9.4 0.36 11.1 2.0 2.1 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF948) SlyX PF04102.12 gi|530549449|ref|YP_008430000.1| - 1.4 9.6 14.8 0.16 12.6 3.1 2.4 2 0 0 2 2 2 0 SlyX DUF4795 PF16043.5 gi|530549449|ref|YP_008430000.1| - 1.6 8.3 15.9 0.93 9.1 4.7 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4795) Snapin_Pallidin PF14712.6 gi|530549449|ref|YP_008430000.1| - 1.7 9.1 20.2 1.2 9.6 5.9 2.1 1 1 1 2 2 2 0 Snapin/Pallidin DUF4140 PF13600.6 gi|530549449|ref|YP_008430000.1| - 1.8 9.0 14.6 0.56 10.7 5.5 2.3 1 1 1 2 2 2 0 N-terminal domain of unknown function (DUF4140) Fib_alpha PF08702.10 gi|530549449|ref|YP_008430000.1| - 1.9 8.7 13.8 4.7 7.4 13.8 1.7 1 1 0 1 1 1 0 Fibrinogen alpha/beta chain family Spectrin PF00435.21 gi|530549449|ref|YP_008430000.1| - 1.9 9.0 15.7 2.1 8.9 11.8 2.1 1 1 1 2 2 2 0 Spectrin repeat Med9 PF07544.13 gi|530549449|ref|YP_008430000.1| - 2 8.6 14.3 5e+02 0.9 14.3 2.3 1 1 0 1 1 1 0 RNA polymerase II transcription mediator complex subunit 9 E2F_CC-MB PF16421.5 gi|530549449|ref|YP_008430000.1| - 2.1 8.8 12.3 0.74 10.2 2.9 2.5 1 1 1 2 2 2 0 E2F transcription factor CC-MB domain L27_1 PF09058.10 gi|530549449|ref|YP_008430000.1| - 2.1 8.4 12.7 4.4 7.4 2.1 3.1 2 1 1 3 3 3 0 L27_1 zf-CpG_bind_C PF12269.8 gi|530549449|ref|YP_008430000.1| - 2.8 7.6 12.7 2.2 8.0 4.3 2.0 1 1 1 2 2 2 0 CpG binding protein zinc finger C terminal domain WXG100 PF06013.12 gi|530549449|ref|YP_008430000.1| - 3 8.2 8.9 3.3 8.0 2.1 2.7 2 1 0 2 2 2 0 Proteins of 100 residues with WXG Syntaxin-6_N PF09177.11 gi|530549449|ref|YP_008430000.1| - 3.2 8.4 9.6 7.5 7.2 7.8 2.0 1 1 1 2 2 2 0 Syntaxin 6, N-terminal CinA_KH PF18146.1 gi|530549449|ref|YP_008430000.1| - 3.3 7.9 6.7 0.96 9.6 0.9 2.4 1 1 2 3 3 2 0 Damage-inducible protein CinA KH domain CREPT PF16566.5 gi|530549449|ref|YP_008430000.1| - 4 7.6 14.6 4.1 7.6 4.8 2.1 1 1 0 2 2 2 0 Cell-cycle alteration and expression-elevated protein in tumour MCU PF04678.13 gi|530549449|ref|YP_008430000.1| - 4.3 7.4 11.2 12 6.0 6.0 2.0 1 1 1 2 2 2 0 Mitochondrial calcium uniporter bZIP_1 PF00170.21 gi|530549449|ref|YP_008430000.1| - 4.4 7.5 14.5 0.099 12.8 5.4 2.5 2 1 0 2 2 2 0 bZIP transcription factor Fmp27_WPPW PF10359.9 gi|530549449|ref|YP_008430000.1| - 4.8 5.9 11.1 7.6 5.3 11.1 1.3 1 1 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain Allexi_40kDa PF05549.11 gi|530549449|ref|YP_008430000.1| - 5 6.5 7.0 19 4.7 7.0 1.7 1 1 0 1 1 1 0 Allexivirus 40kDa protein GP41 PF00517.17 gi|530549449|ref|YP_008430000.1| - 6.7 6.6 13.8 5.4 6.9 2.3 2.0 1 1 1 2 2 2 0 Retroviral envelope protein HemX PF04375.14 gi|530549449|ref|YP_008430000.1| - 6.7 5.9 17.4 32 3.7 17.4 1.8 1 1 0 1 1 1 0 HemX, putative uroporphyrinogen-III C-methyltransferase DUF16 PF01519.16 gi|530549449|ref|YP_008430000.1| - 6.9 7.2 18.9 0.31 11.5 5.3 2.1 1 1 1 2 2 2 0 Protein of unknown function DUF16 Cauli_AT PF03233.13 gi|530549449|ref|YP_008430000.1| - 7.4 6.5 12.4 5.5 6.9 3.8 2.0 1 1 1 2 2 2 0 Aphid transmission protein TMPIT PF07851.13 gi|530549449|ref|YP_008430000.1| - 9.3 5.4 10.7 38 3.4 10.7 1.8 1 1 0 1 1 1 0 TMPIT-like protein DivIC PF04977.15 gi|530549449|ref|YP_008430000.1| - 9.7 6.0 20.1 1.3 8.9 6.0 2.2 2 0 0 2 2 2 0 Septum formation initiator DUF3194 PF11419.8 gi|530549450|ref|YP_008430001.1| - 1.1e-24 86.6 5.8 1.3e-24 86.3 5.8 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3194) Ribosomal_S30AE PF02482.19 gi|530549450|ref|YP_008430001.1| - 0.013 16.3 3.7 0.016 15.9 3.7 1.1 1 0 0 1 1 1 0 Sigma 54 modulation protein / S30EA ribosomal protein Ribosomal_L5 PF00281.19 gi|530549450|ref|YP_008430001.1| - 0.11 12.9 0.0 0.22 11.9 0.0 1.5 1 0 0 1 1 1 0 Ribosomal protein L5 FKBP_N_2 PF18023.1 gi|530549450|ref|YP_008430001.1| - 0.14 12.2 2.8 0.15 12.1 1.0 1.8 1 1 1 2 2 2 0 BDBT FKBP like N-terminal DHHA1 PF02272.19 gi|530549451|ref|YP_008430002.1| - 3.8e-14 53.3 2.8 1e-12 48.6 3.1 2.3 2 0 0 2 2 2 1 DHHA1 domain DHH PF01368.20 gi|530549451|ref|YP_008430002.1| - 1.8e-12 47.4 0.0 3.5e-12 46.5 0.0 1.6 1 0 0 1 1 1 1 DHH family SPOC PF07744.13 gi|530549451|ref|YP_008430002.1| - 0.016 15.1 0.1 5.6 6.9 0.0 2.3 2 0 0 2 2 2 0 SPOC domain Acid_PPase PF12689.7 gi|530549451|ref|YP_008430002.1| - 0.082 12.8 0.0 0.18 11.7 0.0 1.6 2 0 0 2 2 2 0 Acid Phosphatase zf-ribbon_3 PF13248.6 gi|530549452|ref|YP_008430003.1| - 0.0005 19.4 1.0 0.69 9.4 0.1 2.2 2 0 0 2 2 2 2 zinc-ribbon domain zf-ACC PF17848.1 gi|530549452|ref|YP_008430003.1| - 0.0006 19.8 0.6 0.36 10.9 0.1 2.3 2 0 0 2 2 2 1 Acetyl-coA carboxylase zinc finger domain zf-C2H2 PF00096.26 gi|530549452|ref|YP_008430003.1| - 0.0024 18.2 0.8 1.6 9.4 0.1 2.4 2 0 0 2 2 2 1 Zinc finger, C2H2 type YacG PF03884.14 gi|530549452|ref|YP_008430003.1| - 0.0028 17.4 0.3 0.28 10.9 0.1 2.2 2 0 0 2 2 2 1 DNA gyrase inhibitor YacG zf_UBZ PF18439.1 gi|530549452|ref|YP_008430003.1| - 0.0036 16.9 2.4 0.83 9.3 0.2 2.5 2 0 0 2 2 2 2 Ubiquitin-Binding Zinc Finger TF_Zn_Ribbon PF08271.12 gi|530549452|ref|YP_008430003.1| - 0.005 16.3 1.2 0.44 10.1 0.1 2.4 2 0 0 2 2 2 1 TFIIB zinc-binding zf-Di19 PF05605.12 gi|530549452|ref|YP_008430003.1| - 0.0052 17.0 0.4 2.6 8.4 0.0 2.2 2 0 0 2 2 2 1 Drought induced 19 protein (Di19), zinc-binding DNA_ligase_ZBD PF03119.16 gi|530549452|ref|YP_008430003.1| - 0.0087 16.1 0.3 3.2 7.9 0.0 2.3 2 0 0 2 2 2 1 NAD-dependent DNA ligase C4 zinc finger domain zf-C2H2_4 PF13894.6 gi|530549452|ref|YP_008430003.1| - 0.015 16.0 1.6 2.5 9.2 0.2 2.4 2 0 0 2 2 2 0 C2H2-type zinc finger zinc_ribbon_2 PF13240.6 gi|530549452|ref|YP_008430003.1| - 0.019 14.6 4.2 1 9.2 0.6 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Ogr_Delta PF04606.12 gi|530549452|ref|YP_008430003.1| - 0.031 14.3 0.3 1.3 9.0 0.0 2.2 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger Prok-RING_1 PF14446.6 gi|530549452|ref|YP_008430003.1| - 0.041 13.8 0.8 3.8 7.5 0.1 2.2 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 DiS_P_DiS PF06750.13 gi|530549452|ref|YP_008430003.1| - 0.06 13.5 0.2 0.67 10.1 0.1 2.1 2 0 0 2 2 2 0 Bacterial Peptidase A24 N-terminal domain DUF1610 PF07754.11 gi|530549452|ref|YP_008430003.1| - 0.065 13.2 4.8 0.095 12.7 0.3 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) OrfB_Zn_ribbon PF07282.11 gi|530549452|ref|YP_008430003.1| - 0.075 13.0 0.1 3.2 7.7 0.0 2.4 2 0 0 2 2 2 0 Putative transposase DNA-binding domain Mu-like_Com PF10122.9 gi|530549452|ref|YP_008430003.1| - 0.085 12.3 1.5 0.28 10.7 0.0 2.1 2 0 0 2 2 2 0 Mu-like prophage protein Com zf-C2H2_6 PF13912.6 gi|530549452|ref|YP_008430003.1| - 0.097 12.7 4.5 1.2 9.3 0.8 2.3 2 0 0 2 2 2 0 C2H2-type zinc finger Prok-RING_4 PF14447.6 gi|530549452|ref|YP_008430003.1| - 0.11 12.4 0.2 1.6 8.7 0.0 2.1 2 0 0 2 2 2 0 Prokaryotic RING finger family 4 Zn-ribbon_8 PF09723.10 gi|530549452|ref|YP_008430003.1| - 0.12 12.5 4.3 1.5 9.0 1.5 2.4 2 1 0 2 2 2 0 Zinc ribbon domain Zn_ribbon_SprT PF17283.2 gi|530549452|ref|YP_008430003.1| - 0.12 12.3 1.3 2.6 8.0 0.1 2.2 2 0 0 2 2 2 0 SprT-like zinc ribbon domain zf-LITAF-like PF10601.9 gi|530549452|ref|YP_008430003.1| - 0.15 12.4 0.1 5.7 7.3 0.0 2.1 2 0 0 2 2 2 0 LITAF-like zinc ribbon domain Adeno_shaft PF00608.17 gi|530549452|ref|YP_008430003.1| - 0.16 11.8 0.1 0.25 11.2 0.1 1.2 1 0 0 1 1 1 0 Adenoviral fibre protein (repeat/shaft region) DUF2321 PF10083.9 gi|530549452|ref|YP_008430003.1| - 0.17 11.5 0.0 1.3 8.7 0.0 1.9 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2321) zinc_ribbon_10 PF10058.9 gi|530549452|ref|YP_008430003.1| - 0.18 11.5 0.8 0.79 9.5 0.0 2.1 2 0 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein YhfH PF14149.6 gi|530549452|ref|YP_008430003.1| - 0.19 11.8 3.0 4.3 7.4 0.3 2.4 2 0 0 2 2 2 0 YhfH-like protein CpXC PF14353.6 gi|530549452|ref|YP_008430003.1| - 0.2 11.7 2.2 4.3 7.4 2.3 2.3 1 1 0 1 1 1 0 CpXC protein Sgf11 PF08209.11 gi|530549452|ref|YP_008430003.1| - 0.29 10.7 2.2 5.9 6.5 0.1 2.2 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) Cys_rich_CPXG PF14255.6 gi|530549452|ref|YP_008430003.1| - 0.44 10.5 1.8 30 4.6 0.0 2.6 3 0 0 3 3 3 0 Cysteine-rich CPXCG zf-NADH-PPase PF09297.11 gi|530549452|ref|YP_008430003.1| - 0.51 10.0 3.0 2.4 7.9 0.2 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zf-H2C2_2 PF13465.6 gi|530549452|ref|YP_008430003.1| - 1.5 9.4 5.9 7.9 7.1 1.7 2.2 2 0 0 2 2 2 0 Zinc-finger double domain Zn-C2H2_12 PF18112.1 gi|530549452|ref|YP_008430003.1| - 4.9 7.7 5.6 7.7 7.1 0.3 2.4 2 0 0 2 2 2 0 Autophagy receptor zinc finger-C2H2 domain TPR_12 PF13424.6 gi|530549453|ref|YP_008430004.1| - 0.0016 18.7 13.9 0.0028 17.9 1.7 4.7 5 2 0 5 5 5 1 Tetratricopeptide repeat TPR_MalT PF17874.1 gi|530549453|ref|YP_008430004.1| - 0.0023 17.3 0.0 0.0035 16.8 0.0 1.4 1 0 0 1 1 1 1 MalT-like TPR region Utp13 PF08625.11 gi|530549453|ref|YP_008430004.1| - 0.022 14.6 0.3 0.092 12.6 0.0 2.2 2 1 0 2 2 2 0 Utp13 specific WD40 associated domain MRP-S22 PF10245.9 gi|530549453|ref|YP_008430004.1| - 0.028 14.2 0.2 1.9 8.1 0.0 2.5 2 1 0 2 2 2 0 Mitochondrial 28S ribosomal protein S22 SeleniumBinding PF11524.8 gi|530549453|ref|YP_008430004.1| - 0.045 14.2 0.0 3.9 8.0 0.0 2.7 2 0 0 2 2 2 0 Selenium binding protein Spatacsin_C PF14649.6 gi|530549453|ref|YP_008430004.1| - 0.085 11.9 1.7 0.094 11.8 0.6 1.7 2 0 0 2 2 2 0 Spatacsin C-terminus TPR_2 PF07719.17 gi|530549453|ref|YP_008430004.1| - 0.36 11.0 14.8 44 4.5 6.3 5.7 6 0 0 6 6 6 0 Tetratricopeptide repeat Alpha_Helical PF18489.1 gi|530549454|ref|YP_008430005.1| - 7.1e-55 184.6 0.5 9.3e-55 184.2 0.5 1.2 1 0 0 1 1 1 1 Alpha helical domain tRNA_bind PF01588.20 gi|530549454|ref|YP_008430005.1| - 2.9e-20 72.2 0.1 4.8e-20 71.5 0.1 1.3 1 0 0 1 1 1 1 Putative tRNA binding domain Trep_dent_lipo PF09710.10 gi|530549454|ref|YP_008430005.1| - 0.077 11.9 0.2 0.52 9.2 0.0 2.0 2 0 0 2 2 2 0 Treponema clustered lipoprotein (Trep_dent_lipo) Big_7 PF17957.1 gi|530549455|ref|YP_008430006.1| - 0.0055 17.4 0.6 1.1 10.0 0.0 2.8 2 0 0 2 2 2 1 Bacterial Ig domain MelC1 PF06236.11 gi|530549455|ref|YP_008430006.1| - 0.041 13.9 0.0 0.081 13.0 0.0 1.5 1 0 0 1 1 1 0 Tyrosinase co-factor MelC1 Glyco_hyd_65N_2 PF14498.6 gi|530549455|ref|YP_008430006.1| - 0.085 12.7 0.3 0.21 11.4 0.1 1.7 2 0 0 2 2 2 0 Glycosyl hydrolase family 65, N-terminal domain Imm3 PF14425.6 gi|530549456|ref|YP_008430007.1| - 0.062 13.3 0.1 0.17 11.9 0.1 1.7 1 0 0 1 1 1 0 Immunity protein Imm3 DUF5373 PF17343.2 gi|530549457|ref|YP_008430008.1| - 0.14 11.9 0.1 0.16 11.8 0.1 1.0 1 0 0 1 1 1 0 Family of unknown function (DUF5373) SPOR PF05036.13 gi|530549459|ref|YP_008430010.1| - 0.024 15.0 0.0 6.7 7.2 0.0 2.3 2 0 0 2 2 2 0 Sporulation related domain Lig_C PF18330.1 gi|530549460|ref|YP_008430011.1| - 6.4e-28 97.3 0.2 1.2e-27 96.4 0.2 1.5 1 0 0 1 1 1 1 Ligase Pab1020 C-terminal region RNA_ligase PF09414.10 gi|530549460|ref|YP_008430011.1| - 1.9e-19 70.6 0.6 2.8e-19 70.0 0.3 1.5 2 0 0 2 2 2 1 RNA ligase DNA_ligase_A_M PF01068.21 gi|530549460|ref|YP_008430011.1| - 1.6e-07 31.2 0.1 0.02 14.5 0.0 2.3 2 0 0 2 2 2 2 ATP dependent DNA ligase domain DUF4443 PF14544.6 gi|530549461|ref|YP_008430012.1| - 6.4e-41 139.1 0.0 9.3e-41 138.5 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4443) Fe_dep_repress PF01325.19 gi|530549461|ref|YP_008430012.1| - 0.0003 20.9 0.0 0.00057 20.0 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_45 PF14947.6 gi|530549461|ref|YP_008430012.1| - 0.00043 20.2 0.0 0.00077 19.4 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix Ribosomal_S19e PF01090.19 gi|530549461|ref|YP_008430012.1| - 0.00066 19.4 0.1 0.001 18.8 0.1 1.3 1 0 0 1 1 1 1 Ribosomal protein S19e HrcA_DNA-bdg PF03444.15 gi|530549461|ref|YP_008430012.1| - 0.0008 19.0 0.1 0.0019 17.8 0.1 1.6 1 1 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding TrmB PF01978.19 gi|530549461|ref|YP_008430012.1| - 0.00083 19.2 0.1 0.0017 18.2 0.1 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_12 PF08461.10 gi|530549461|ref|YP_008430012.1| - 0.0018 18.2 0.2 0.0041 17.0 0.1 1.7 2 0 0 2 2 1 1 Ribonuclease R winged-helix domain HTH_5 PF01022.20 gi|530549461|ref|YP_008430012.1| - 0.0025 17.6 0.2 0.0076 16.1 0.1 1.8 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_41 PF14502.6 gi|530549461|ref|YP_008430012.1| - 0.004 16.8 0.5 0.012 15.3 0.5 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|530549461|ref|YP_008430012.1| - 0.0096 15.5 0.3 0.019 14.5 0.3 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding GntR PF00392.21 gi|530549461|ref|YP_008430012.1| - 0.012 15.3 1.6 0.032 13.9 0.1 2.3 3 0 0 3 3 3 0 Bacterial regulatory proteins, gntR family Rrf2 PF02082.20 gi|530549461|ref|YP_008430012.1| - 0.015 15.6 0.1 0.03 14.6 0.1 1.5 1 0 0 1 1 1 0 Transcriptional regulator PadR PF03551.14 gi|530549461|ref|YP_008430012.1| - 0.038 14.0 0.2 0.34 10.9 0.1 2.2 1 1 1 2 2 2 0 Transcriptional regulator PadR-like family HTH_28 PF13518.6 gi|530549461|ref|YP_008430012.1| - 0.041 14.0 0.0 0.07 13.3 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_27 PF13463.6 gi|530549461|ref|YP_008430012.1| - 0.049 14.1 0.0 0.094 13.2 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain Sigma70_r4_2 PF08281.12 gi|530549461|ref|YP_008430012.1| - 0.05 13.3 0.5 0.25 11.0 0.0 2.2 2 0 0 2 2 2 0 Sigma-70, region 4 MarR_2 PF12802.7 gi|530549461|ref|YP_008430012.1| - 0.055 13.4 0.0 0.12 12.3 0.0 1.5 1 0 0 1 1 1 0 MarR family GerE PF00196.19 gi|530549461|ref|YP_008430012.1| - 0.061 12.9 0.0 0.18 11.4 0.0 1.8 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family TFIIE_alpha PF02002.17 gi|530549461|ref|YP_008430012.1| - 0.063 13.1 0.3 0.16 11.9 0.0 1.8 2 0 0 2 2 2 0 TFIIE alpha subunit HTH_IclR PF09339.10 gi|530549461|ref|YP_008430012.1| - 0.064 13.1 0.0 0.15 11.9 0.0 1.6 1 0 0 1 1 1 0 IclR helix-turn-helix domain PaaX PF07848.12 gi|530549461|ref|YP_008430012.1| - 0.066 13.4 0.0 0.14 12.4 0.0 1.5 1 0 0 1 1 1 0 PaaX-like protein Penicillinase_R PF03965.16 gi|530549461|ref|YP_008430012.1| - 0.076 13.4 0.1 0.15 12.4 0.1 1.4 1 0 0 1 1 1 0 Penicillinase repressor DUF742 PF05331.11 gi|530549461|ref|YP_008430012.1| - 0.14 11.9 0.0 0.24 11.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF742) HTH_11 PF08279.12 gi|530549461|ref|YP_008430012.1| - 0.15 12.0 0.5 0.37 10.8 0.5 1.7 1 1 0 1 1 1 0 HTH domain PUA PF01472.20 gi|530549462|ref|YP_008430013.1| - 1.4e-23 82.6 1.3 1.4e-23 82.6 1.3 1.8 2 0 0 2 2 2 1 PUA domain DUF1947 PF09183.10 gi|530549462|ref|YP_008430013.1| - 1.3e-05 25.4 2.0 8.6e-05 22.8 2.0 2.3 1 1 0 1 1 1 1 Domain of unknown function (DUF1947) UPF0113 PF03657.13 gi|530549462|ref|YP_008430013.1| - 1.5e-05 25.2 0.4 4.1e-05 23.8 0.1 1.8 2 0 0 2 2 2 1 UPF0113 PUA domain Pre-PUA PF17832.1 gi|530549462|ref|YP_008430013.1| - 6.7e-05 23.5 0.1 0.00011 22.8 0.1 1.4 1 0 0 1 1 1 1 Pre-PUA-like domain CTP_transf_like PF01467.26 gi|530547468|ref|YP_008430014.1| - 1e-21 77.6 0.0 1.2e-21 77.4 0.0 1.0 1 0 0 1 1 1 1 Cytidylyltransferase-like FAD_syn PF06574.12 gi|530547468|ref|YP_008430014.1| - 0.00039 20.3 0.6 0.0026 17.6 0.6 2.1 1 1 0 1 1 1 1 FAD synthetase Peripla_BP_2 PF01497.18 gi|530547468|ref|YP_008430014.1| - 0.011 15.4 0.0 0.013 15.1 0.0 1.2 1 0 0 1 1 1 0 Periplasmic binding protein HIGH_NTase1 PF05636.11 gi|530547468|ref|YP_008430014.1| - 0.026 13.7 0.0 0.036 13.3 0.0 1.2 1 0 0 1 1 1 0 HIGH Nucleotidyl Transferase Tubulin PF00091.25 gi|530549463|ref|YP_008430015.1| - 2.6e-41 142.0 0.1 6.4e-41 140.7 0.1 1.7 1 0 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain FtsZ_C PF12327.8 gi|530549463|ref|YP_008430015.1| - 1.6e-23 82.8 1.1 1.6e-23 82.8 1.1 2.2 3 0 0 3 3 3 1 FtsZ family, C-terminal domain NAD_binding_10 PF13460.6 gi|530549463|ref|YP_008430015.1| - 0.066 13.1 0.0 0.14 12.0 0.0 1.7 1 0 0 1 1 1 0 NAD(P)H-binding Tubulin_2 PF13809.6 gi|530549463|ref|YP_008430015.1| - 0.54 9.4 5.2 2.1 7.5 0.2 3.1 2 1 0 3 3 3 0 Tubulin like RHH_1 PF01402.21 gi|530547469|ref|YP_008430016.1| - 2.9e-09 36.5 0.0 4.4e-09 35.9 0.0 1.2 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_8 PF17723.1 gi|530547469|ref|YP_008430016.1| - 2.7e-05 24.3 0.0 2.9e-05 24.2 0.0 1.1 1 0 0 1 1 1 1 Ribbon-Helix-Helix transcriptional regulator family VapB_antitoxin PF09957.9 gi|530547469|ref|YP_008430016.1| - 0.02 14.8 1.0 0.038 13.9 1.0 1.6 1 1 0 1 1 1 0 Bacterial antitoxin of type II TA system, VapB DUF5440 PF17509.2 gi|530547469|ref|YP_008430016.1| - 0.035 13.7 0.0 0.042 13.5 0.0 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5440) CGI-121 PF08617.10 gi|530549464|ref|YP_008430017.1| - 2.7e-09 37.4 0.2 3e-09 37.2 0.2 1.2 1 0 0 1 1 1 1 Kinase binding protein CGI-121 Aminotran_1_2 PF00155.21 gi|530549465|ref|YP_008430018.1| - 1.1e-72 245.2 0.0 1.3e-72 245.0 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|530549465|ref|YP_008430018.1| - 4.2e-09 36.2 0.0 7.1e-09 35.4 0.0 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 gi|530549465|ref|YP_008430018.1| - 1.3e-07 30.9 0.0 1.4e-05 24.2 0.0 2.1 2 0 0 2 2 2 2 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|530549465|ref|YP_008430018.1| - 7.9e-06 25.4 0.0 1.4e-05 24.5 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.20 gi|530549465|ref|YP_008430018.1| - 0.0016 17.0 0.0 0.0027 16.3 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Alliinase_C PF04864.13 gi|530549465|ref|YP_008430018.1| - 0.0043 16.0 0.1 0.2 10.5 0.1 2.5 1 1 1 2 2 2 1 Allinase HU-CCDC81_bac_1 PF18174.1 gi|530549465|ref|YP_008430018.1| - 0.023 14.6 0.0 0.21 11.5 0.0 2.2 2 0 0 2 2 2 0 CCDC81-like prokaryotic HU domain 1 UPF0016 PF01169.19 gi|530549466|ref|YP_008430019.1| - 3.7e-23 81.6 5.9 4.2e-23 81.5 5.9 1.0 1 0 0 1 1 1 1 Uncharacterized protein family UPF0016 DUF4064 PF13273.6 gi|530549466|ref|YP_008430019.1| - 1.8 8.9 9.6 4.4 7.6 9.6 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF4064) MFS_1 PF07690.16 gi|530549467|ref|YP_008430020.1| - 3.9e-20 72.1 40.6 5.6e-20 71.6 40.6 1.1 1 0 0 1 1 1 1 Major Facilitator Superfamily DUF2700 PF10912.8 gi|530549468|ref|YP_008430021.1| - 0.0018 18.3 8.4 0.0018 18.3 8.4 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF2700) DPM3 PF08285.11 gi|530549468|ref|YP_008430021.1| - 8.2 6.7 6.9 2.3 8.5 1.9 2.1 1 1 1 2 2 2 0 Dolichol-phosphate mannosyltransferase subunit 3 (DPM3) tRNA_U5-meth_tr PF05958.11 gi|530549469|ref|YP_008430022.1| - 6.7e-24 84.5 0.1 1.7e-15 56.8 0.0 2.9 2 1 1 3 3 3 2 tRNA (Uracil-5-)-methyltransferase MTS PF05175.14 gi|530549469|ref|YP_008430022.1| - 1.7e-09 37.5 0.0 2.8e-09 36.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Met_10 PF02475.16 gi|530549469|ref|YP_008430022.1| - 9.8e-09 35.2 0.1 2.6e-08 33.9 0.1 1.6 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_31 PF13847.6 gi|530549469|ref|YP_008430022.1| - 2.4e-08 33.9 0.0 5.2e-08 32.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|530549469|ref|YP_008430022.1| - 3e-07 31.0 0.0 2.7e-06 28.0 0.0 2.3 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_15 PF09445.10 gi|530549469|ref|YP_008430022.1| - 7.3e-05 22.4 0.0 0.00011 21.8 0.0 1.4 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase PrmA PF06325.13 gi|530549469|ref|YP_008430022.1| - 0.00012 21.6 0.0 0.00017 21.1 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_11 PF08241.12 gi|530549469|ref|YP_008430022.1| - 0.0006 20.4 0.0 0.0036 17.9 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain N6_N4_Mtase PF01555.18 gi|530549469|ref|YP_008430022.1| - 0.013 15.2 0.1 0.02 14.6 0.1 1.6 1 1 0 1 1 1 0 DNA methylase Ubie_methyltran PF01209.18 gi|530549469|ref|YP_008430022.1| - 0.058 12.7 0.0 0.18 11.1 0.0 1.8 1 1 0 1 1 1 0 ubiE/COQ5 methyltransferase family Cons_hypoth95 PF03602.15 gi|530549469|ref|YP_008430022.1| - 0.096 12.3 0.0 0.16 11.6 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical protein 95 Methyltransf_23 PF13489.6 gi|530549469|ref|YP_008430022.1| - 0.1 12.4 0.0 0.19 11.5 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain DOT1 PF08123.13 gi|530549469|ref|YP_008430022.1| - 0.13 11.8 0.0 0.28 10.7 0.0 1.5 1 0 0 1 1 1 0 Histone methylation protein DOT1 TehB PF03848.14 gi|530549469|ref|YP_008430022.1| - 0.14 11.5 0.0 0.35 10.2 0.0 1.6 2 0 0 2 2 2 0 Tellurite resistance protein TehB Aminotran_1_2 PF00155.21 gi|530549470|ref|YP_008430023.1| - 7.9e-16 58.2 0.0 9.9e-16 57.9 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Alliinase_C PF04864.13 gi|530549470|ref|YP_008430023.1| - 0.0076 15.2 0.0 0.5 9.2 0.0 2.1 1 1 1 2 2 2 2 Allinase DUF2232 PF09991.9 gi|530549470|ref|YP_008430023.1| - 0.012 14.8 0.0 0.015 14.5 0.0 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2232) FtsK_SpoIIIE_N PF12538.8 gi|530549470|ref|YP_008430023.1| - 0.11 12.7 0.0 0.15 12.2 0.0 1.2 1 0 0 1 1 1 0 DNA transporter Aminotran_1_2 PF00155.21 gi|530549471|ref|YP_008430024.1| - 1.2e-09 37.9 0.0 1.3e-09 37.8 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II SNF PF00209.18 gi|530549473|ref|YP_008430026.1| - 2.1e-63 214.8 32.2 2.1e-37 129.0 15.0 2.2 1 1 1 2 2 2 2 Sodium:neurotransmitter symporter family PTS_2-RNA PF01885.16 gi|564287492|ref|YP_008430027.3| - 3.3e-30 105.5 0.2 3.9e-30 105.2 0.2 1.0 1 0 0 1 1 1 1 RNA 2'-phosphotransferase, Tpt1 / KptA family PARP PF00644.20 gi|564287492|ref|YP_008430027.3| - 0.0047 16.5 0.0 0.0058 16.3 0.0 1.3 1 0 0 1 1 1 1 Poly(ADP-ribose) polymerase catalytic domain Pyr_redox_2 PF07992.14 gi|530549475|ref|YP_008430028.1| - 1.4e-68 231.3 1.5 1.9e-68 230.8 1.5 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|530549475|ref|YP_008430028.1| - 4.8e-23 81.5 6.5 7.1e-17 61.7 0.8 4.3 4 0 0 4 4 4 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|530549475|ref|YP_008430028.1| - 5.8e-18 65.2 0.1 1.4e-17 63.9 0.0 1.7 2 0 0 2 2 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox_3 PF13738.6 gi|530549475|ref|YP_008430028.1| - 7.9e-11 41.7 1.9 1.3e-09 37.7 0.5 2.8 1 1 1 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|530549475|ref|YP_008430028.1| - 4.4e-07 29.0 5.8 0.4 9.3 0.0 4.1 3 1 1 4 4 4 3 HI0933-like protein DAO PF01266.24 gi|530549475|ref|YP_008430028.1| - 2.7e-06 27.2 7.3 0.19 11.2 0.1 4.1 4 0 0 4 4 4 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|530549475|ref|YP_008430028.1| - 6.8e-06 25.4 5.1 0.032 13.3 1.4 3.7 3 1 1 4 4 4 2 FAD binding domain GIDA PF01134.22 gi|530549475|ref|YP_008430028.1| - 2.1e-05 23.8 0.4 0.096 11.7 0.0 3.2 3 0 0 3 3 3 2 Glucose inhibited division protein A AlaDh_PNT_C PF01262.21 gi|530549475|ref|YP_008430028.1| - 5.7e-05 22.5 0.1 0.13 11.5 0.0 2.5 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_8 PF13450.6 gi|530549475|ref|YP_008430028.1| - 0.00033 20.8 0.8 0.63 10.3 0.2 2.6 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain 3HCDH_N PF02737.18 gi|530549475|ref|YP_008430028.1| - 0.0079 16.1 0.4 0.15 12.0 0.1 2.4 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Glu_dehyd_C PF16912.5 gi|530549475|ref|YP_008430028.1| - 0.012 15.1 0.7 0.39 10.2 0.3 2.6 1 1 1 2 2 2 0 Glucose dehydrogenase C-terminus UDPG_MGDP_dh_N PF03721.14 gi|530549475|ref|YP_008430028.1| - 0.014 15.0 0.3 0.089 12.4 0.1 2.2 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Lycopene_cycl PF05834.12 gi|530549475|ref|YP_008430028.1| - 0.06 12.4 3.4 2.4 7.1 0.0 3.1 2 1 1 3 3 3 0 Lycopene cyclase protein NAD_binding_7 PF13241.6 gi|530549475|ref|YP_008430028.1| - 0.11 12.9 1.3 4.9 7.6 0.3 2.6 2 1 0 2 2 2 0 Putative NAD(P)-binding GFO_IDH_MocA PF01408.22 gi|530549475|ref|YP_008430028.1| - 0.22 12.3 0.8 5.6 7.8 0.0 2.9 3 1 0 3 3 2 0 Oxidoreductase family, NAD-binding Rossmann fold Trp_halogenase PF04820.14 gi|530549475|ref|YP_008430028.1| - 0.77 8.5 0.0 0.77 8.5 0.0 2.3 3 0 0 3 3 3 0 Tryptophan halogenase FAD_binding_3 PF01494.19 gi|530549475|ref|YP_008430028.1| - 1.6 7.9 3.8 4.4 6.5 1.5 2.5 2 1 1 3 3 3 0 FAD binding domain AA_kinase PF00696.28 gi|530549476|ref|YP_008430029.1| - 6.5e-36 124.1 0.5 1.3e-35 123.2 0.5 1.4 1 1 0 1 1 1 1 Amino acid kinase family Phosphorylase PF00343.20 gi|530549477|ref|YP_008430030.1| - 2.6e-40 138.4 0.0 1.4e-28 99.6 0.0 4.0 2 1 1 3 3 3 3 Carbohydrate phosphorylase DUF3417 PF11897.8 gi|530549477|ref|YP_008430030.1| - 6.1e-31 107.1 3.0 6.1e-31 107.1 3.0 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF3417) Glyco_hydro_71 PF03659.14 gi|530549477|ref|YP_008430030.1| - 0.24 10.2 1.3 0.43 9.4 1.3 1.3 1 0 0 1 1 1 0 Glycosyl hydrolase family 71 Sda PF08970.10 gi|530549477|ref|YP_008430030.1| - 1 9.2 5.2 1.6 8.6 0.7 2.7 2 0 0 2 2 2 0 Sporulation inhibitor A ABC_tran PF00005.27 gi|530549478|ref|YP_008430031.1| - 8e-31 107.4 0.0 1.1e-30 107.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|530549478|ref|YP_008430031.1| - 7e-10 39.2 0.9 7.2e-05 22.7 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|530549478|ref|YP_008430031.1| - 5.2e-08 32.6 0.1 2.1e-07 30.6 0.1 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|530549478|ref|YP_008430031.1| - 0.00013 22.5 0.8 0.00019 22.0 0.8 1.6 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|530549478|ref|YP_008430031.1| - 0.00051 19.7 0.0 0.0009 18.9 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|530549478|ref|YP_008430031.1| - 0.0036 17.2 0.0 0.0066 16.4 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase NTPase_1 PF03266.15 gi|530549478|ref|YP_008430031.1| - 0.0043 17.0 0.8 0.4 10.6 0.1 2.2 1 1 1 2 2 2 1 NTPase Rad17 PF03215.15 gi|530549478|ref|YP_008430031.1| - 0.0083 16.1 0.1 0.022 14.7 0.0 1.7 1 1 1 2 2 2 1 Rad17 P-loop domain MeaB PF03308.16 gi|530549478|ref|YP_008430031.1| - 0.0089 15.0 0.0 0.015 14.3 0.0 1.4 1 1 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_15 PF13175.6 gi|530549478|ref|YP_008430031.1| - 0.037 13.8 0.3 0.079 12.6 0.2 1.6 1 1 0 1 1 1 0 AAA ATPase domain cobW PF02492.19 gi|530549478|ref|YP_008430031.1| - 0.043 13.4 0.2 0.067 12.8 0.2 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain SbcCD_C PF13558.6 gi|530549478|ref|YP_008430031.1| - 0.078 13.2 0.2 1.4 9.2 0.2 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit IstB_IS21 PF01695.17 gi|530549478|ref|YP_008430031.1| - 0.082 12.6 0.0 6.5 6.4 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein DUF5331 PF17265.2 gi|530549478|ref|YP_008430031.1| - 0.089 12.5 0.1 1.3 8.8 0.0 2.1 2 0 0 2 2 2 0 Family of unknown function (DUF5331) MMR_HSR1 PF01926.23 gi|530549478|ref|YP_008430031.1| - 0.11 12.6 0.1 0.18 11.9 0.1 1.6 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_30 PF13604.6 gi|530549478|ref|YP_008430031.1| - 0.14 11.8 0.0 0.25 11.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|530549478|ref|YP_008430031.1| - 0.17 12.3 0.0 0.22 11.9 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain CbiQ PF02361.16 gi|530549479|ref|YP_008430032.1| - 1.5e-27 96.6 13.5 1.9e-27 96.3 13.5 1.1 1 0 0 1 1 1 1 Cobalt transport protein PDGLE PF13190.6 gi|530549480|ref|YP_008430033.1| - 4.2e-06 26.6 3.5 1.1e-05 25.2 0.0 2.1 1 1 1 2 2 2 1 PDGLE domain PsbX PF06596.11 gi|530549480|ref|YP_008430033.1| - 0.8 9.8 4.2 1.4 9.0 0.2 2.1 2 0 0 2 2 2 0 Photosystem II reaction centre X protein (PsbX) DUF3930 PF13067.6 gi|530549480|ref|YP_008430033.1| - 1.5 9.1 3.3 22 5.4 0.2 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3930) CbiM PF01891.16 gi|530549481|ref|YP_008430034.1| - 1.6e-62 211.1 20.9 1.7e-62 210.9 20.9 1.0 1 0 0 1 1 1 1 Cobalt uptake substrate-specific transmembrane region Transgly_assoc PF04226.13 gi|530549481|ref|YP_008430034.1| - 0.00083 19.6 2.7 0.00083 19.6 2.7 3.9 2 2 1 3 3 3 1 Transglycosylase associated protein DUF3149 PF11346.8 gi|530549481|ref|YP_008430034.1| - 0.0036 16.9 1.0 2.2 8.0 0.0 3.9 3 0 0 3 3 3 1 Protein of unknown function (DUF3149) DUF2371 PF10177.9 gi|530549481|ref|YP_008430034.1| - 0.83 9.8 2.9 1.7 8.8 1.1 2.2 2 1 0 2 2 2 0 Uncharacterised conserved protein (DUF2371) DUF2238 PF09997.9 gi|530549482|ref|YP_008430035.1| - 0.0074 16.1 0.3 0.016 15.0 0.3 1.6 1 0 0 1 1 1 1 Predicted membrane protein (DUF2238) COX7a PF02238.15 gi|530549482|ref|YP_008430035.1| - 0.012 16.0 1.8 0.035 14.5 0.1 2.6 3 0 0 3 3 3 0 Cytochrome c oxidase subunit VII VanZ PF04892.12 gi|530549482|ref|YP_008430035.1| - 0.032 14.9 6.8 0.029 15.0 1.9 2.5 1 1 1 2 2 2 0 VanZ like family Ndc1_Nup PF09531.10 gi|530549482|ref|YP_008430035.1| - 1.5 7.4 3.7 1.9 7.1 3.7 1.0 1 0 0 1 1 1 0 Nucleoporin protein Ndc1-Nup DUF5379 PF17350.2 gi|530549482|ref|YP_008430035.1| - 1.6 9.0 5.7 16 5.8 0.5 2.6 3 0 0 3 3 3 0 Family of unknown function (DUF5379) YitT_membrane PF02588.15 gi|530549482|ref|YP_008430035.1| - 2.2 7.6 6.5 2 7.7 0.3 2.8 1 1 2 3 3 3 0 Uncharacterised 5xTM membrane BCR, YitT family COG1284 CBS PF00571.28 gi|530549483|ref|YP_008430036.1| - 2.2e-43 146.5 14.5 1.2e-16 60.8 0.2 4.4 4 0 0 4 4 4 4 CBS domain Hrs_helical PF12210.8 gi|530549483|ref|YP_008430036.1| - 0.026 15.0 0.0 0.069 13.7 0.0 1.6 1 0 0 1 1 1 0 Hepatocyte growth factor-regulated tyrosine kinase substrate GAF PF01590.26 gi|530549483|ref|YP_008430036.1| - 0.094 13.3 0.0 4 8.1 0.0 2.4 2 0 0 2 2 2 0 GAF domain DUF835 PF05763.12 gi|530549484|ref|YP_008430037.1| - 6.3e-33 113.4 0.5 9.3e-33 112.8 0.5 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF835) VEGFR-2_TMD PF17988.1 gi|530549484|ref|YP_008430037.1| - 0.97 8.9 4.5 5.3 6.6 0.7 3.0 3 0 0 3 3 3 0 VEGFR-2 Transmembrane domain NTP_transferase PF00483.23 gi|530549485|ref|YP_008430038.1| - 2.8e-43 148.3 0.1 3.7e-43 147.9 0.1 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.24 gi|530549485|ref|YP_008430038.1| - 7e-19 66.8 24.6 1.5e-08 34.0 0.8 4.7 3 1 0 4 4 4 4 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.7 gi|530549485|ref|YP_008430038.1| - 9.6e-16 58.5 0.0 1.4e-15 58.1 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep_2 PF14602.6 gi|530549485|ref|YP_008430038.1| - 2.6e-11 43.1 14.2 5.1e-07 29.3 0.3 4.5 4 0 0 4 4 4 2 Hexapeptide repeat of succinyl-transferase IspD PF01128.19 gi|530549485|ref|YP_008430038.1| - 0.00024 20.9 0.0 0.00041 20.2 0.0 1.4 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Glycos_transf_2 PF00535.26 gi|530549485|ref|YP_008430038.1| - 0.0061 16.4 0.0 0.011 15.6 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 DUF4954 PF16314.5 gi|530549485|ref|YP_008430038.1| - 0.067 11.3 1.1 0.12 10.4 1.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4954) BacA PF02673.18 gi|530549486|ref|YP_008430039.1| - 7.2e-54 183.2 13.3 8.3e-54 183.0 13.3 1.0 1 0 0 1 1 1 1 Bacitracin resistance protein BacA DUF5316 PF17247.2 gi|530549486|ref|YP_008430039.1| - 3.5 7.7 10.7 6.1 6.9 0.0 4.0 4 0 0 4 4 4 0 Family of unknown function (DUF5316) TRAM PF01938.20 gi|530549487|ref|YP_008430040.1| - 8.6e-15 54.5 2.8 9.7e-15 54.3 2.8 1.0 1 0 0 1 1 1 1 TRAM domain Hexapep PF00132.24 gi|530549487|ref|YP_008430040.1| - 0.033 13.9 2.6 0.071 12.9 0.8 2.2 2 1 0 2 2 2 0 Bacterial transferase hexapeptide (six repeats) MNHE PF01899.16 gi|530549488|ref|YP_008430041.1| - 8.2e-42 142.4 0.3 9.3e-42 142.2 0.3 1.0 1 0 0 1 1 1 1 Na+/H+ ion antiporter subunit DUF3494 PF11999.8 gi|530549488|ref|YP_008430041.1| - 0.074 12.7 0.0 0.084 12.5 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3494) AMIN PF11741.8 gi|530549488|ref|YP_008430041.1| - 0.15 12.2 0.0 0.2 11.8 0.0 1.2 1 0 0 1 1 1 0 AMIN domain MrpF_PhaF PF04066.13 gi|530549489|ref|YP_008430042.1| - 1.2e-20 73.6 6.3 1.2e-20 73.6 6.3 2.0 2 0 0 2 2 2 1 Multiple resistance and pH regulation protein F (MrpF / PhaF) DUF2108 PF09881.9 gi|530549489|ref|YP_008430042.1| - 3 7.9 11.8 0.48 10.4 6.8 2.0 2 1 0 2 2 2 0 Predicted membrane protein (DUF2108) PhaG_MnhG_YufB PF03334.14 gi|530549490|ref|YP_008430043.1| - 4.6e-24 84.4 4.8 5.6e-24 84.2 4.8 1.1 1 0 0 1 1 1 1 Na+/H+ antiporter subunit MASE3 PF17159.4 gi|530549490|ref|YP_008430043.1| - 0.0036 17.0 3.2 0.0039 16.8 3.2 1.1 1 0 0 1 1 1 1 Membrane-associated sensor domain LHC PF00556.20 gi|530549490|ref|YP_008430043.1| - 0.007 16.5 9.1 0.24 11.6 0.1 2.8 3 0 0 3 3 3 2 Antenna complex alpha/beta subunit 7TM_GPCR_Sri PF10327.9 gi|530549490|ref|YP_008430043.1| - 0.024 13.9 0.3 0.024 13.9 0.3 1.6 2 0 0 2 2 2 0 Serpentine type 7TM GPCR chemoreceptor Sri DUF1541 PF07563.11 gi|530549490|ref|YP_008430043.1| - 0.11 12.3 0.0 0.18 11.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1541) Rhomboid PF01694.22 gi|530549490|ref|YP_008430043.1| - 0.16 12.0 4.2 0.27 11.2 4.2 1.3 1 1 0 1 1 1 0 Rhomboid family DUF3021 PF11457.8 gi|530549490|ref|YP_008430043.1| - 0.21 11.9 3.9 0.26 11.6 3.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3021) DUF4040 PF13244.6 gi|530549491|ref|YP_008430044.1| - 1.2e-17 63.8 5.2 1.5e-17 63.5 5.2 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4040) Oxidored_q3 PF00499.20 gi|530549491|ref|YP_008430044.1| - 0.0043 16.8 0.0 0.0062 16.3 0.0 1.3 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 TspO_MBR PF03073.15 gi|530549491|ref|YP_008430044.1| - 0.026 14.6 3.7 0.031 14.3 3.7 1.1 1 0 0 1 1 1 0 TspO/MBR family DUF2070 PF09843.9 gi|530549491|ref|YP_008430044.1| - 0.11 10.7 1.0 0.11 10.7 1.0 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) DUF3487 PF11990.8 gi|530549491|ref|YP_008430044.1| - 0.35 10.8 3.2 0.3 11.0 0.5 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF3487) DUF2106 PF09879.9 gi|530549492|ref|YP_008430045.1| - 0.088 12.3 0.1 0.11 12.0 0.1 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2106) MnhB PF04039.13 gi|530549493|ref|YP_008430046.1| - 1.2e-27 96.6 11.4 1.5e-27 96.4 11.4 1.1 1 0 0 1 1 1 1 Domain related to MnhB subunit of Na+/H+ antiporter TMEM100 PF16311.5 gi|530549493|ref|YP_008430046.1| - 0.098 12.2 0.1 0.15 11.7 0.1 1.3 1 0 0 1 1 1 0 Transmembrane protein 100 Oxidored_q2 PF00420.24 gi|530549494|ref|YP_008430047.1| - 1.7e-26 91.9 4.2 2.1e-26 91.6 4.2 1.0 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DUF2108 PF09881.9 gi|530549494|ref|YP_008430047.1| - 0.00055 19.8 1.9 0.00055 19.8 1.9 1.8 2 0 0 2 2 2 1 Predicted membrane protein (DUF2108) Saf_2TM PF18303.1 gi|530549494|ref|YP_008430047.1| - 0.14 11.7 1.5 0.26 10.9 1.2 1.6 1 1 0 1 1 1 0 SAVED-fused 2TM effector domain Adeno_E3_CR2 PF02439.15 gi|530549494|ref|YP_008430047.1| - 2.1 8.2 6.5 2.4 8.0 0.6 2.3 2 0 0 2 2 2 0 Adenovirus E3 region protein CR2 Proton_antipo_M PF00361.20 gi|530549495|ref|YP_008430048.1| - 1.1e-55 188.9 37.0 1.4e-32 113.1 17.7 3.5 2 1 1 3 3 3 2 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|530549495|ref|YP_008430048.1| - 7.5e-11 41.9 0.2 3.3e-10 39.9 0.2 2.2 1 0 0 1 1 1 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus NADHdeh_related PF10125.9 gi|530549495|ref|YP_008430048.1| - 1.2e-08 34.6 6.0 1.2e-08 34.6 6.0 2.8 2 1 0 2 2 2 2 NADH dehydrogenase I, subunit N related protein Proton_antipo_C PF01010.19 gi|530549495|ref|YP_008430048.1| - 0.81 9.3 4.4 1.4 8.5 0.1 2.6 2 1 0 2 2 2 0 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus Glucos_trans_II PF14264.6 gi|564287493|ref|YP_008430049.3| - 0.012 15.0 0.2 0.014 14.8 0.2 1.0 1 0 0 1 1 1 0 Glucosyl transferase GtrII UcrQ PF02939.16 gi|564287493|ref|YP_008430049.3| - 0.16 11.9 0.3 0.41 10.6 0.1 1.7 2 0 0 2 2 2 0 UcrQ family LapA_dom PF06305.11 gi|564287493|ref|YP_008430049.3| - 1 9.2 6.1 2.1 8.2 0.1 2.2 2 0 0 2 2 2 0 Lipopolysaccharide assembly protein A domain Oxidored_q6 PF01058.22 gi|530549497|ref|YP_008430050.1| - 7.5e-27 93.7 0.0 9.6e-27 93.4 0.0 1.1 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Complex1_30kDa PF00329.19 gi|530549498|ref|YP_008430051.1| - 2.4e-22 79.8 0.0 3.4e-22 79.3 0.0 1.1 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit DUF2179 PF10035.9 gi|530549498|ref|YP_008430051.1| - 0.012 15.3 0.0 0.019 14.7 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2179) KAR9 PF08580.10 gi|530549498|ref|YP_008430051.1| - 0.099 11.2 0.0 0.13 10.8 0.0 1.1 1 0 0 1 1 1 0 Yeast cortical protein KAR9 Complex1_49kDa PF00346.19 gi|530549499|ref|YP_008430052.1| - 5.1e-58 196.3 0.0 1.1e-56 192.0 0.0 2.1 1 1 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NiFeSe_Hases PF00374.19 gi|530549499|ref|YP_008430052.1| - 7.2e-19 68.0 1.4 8.5e-13 48.0 0.1 2.9 2 2 1 3 3 3 2 Nickel-dependent hydrogenase DUF1722 PF08349.11 gi|530549499|ref|YP_008430052.1| - 0.12 12.6 0.0 0.24 11.7 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1722) NADHdh PF00146.21 gi|530549500|ref|YP_008430053.1| - 1.1e-57 195.7 19.4 1.3e-57 195.4 19.4 1.0 1 0 0 1 1 1 1 NADH dehydrogenase Fer4 PF00037.27 gi|530549501|ref|YP_008430054.1| - 5.4e-30 102.0 32.7 1.1e-08 34.5 4.1 4.2 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_7 PF12838.7 gi|530549501|ref|YP_008430054.1| - 2.3e-27 95.3 60.4 1.8e-09 38.0 11.2 3.2 1 1 3 4 4 4 4 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|530549501|ref|YP_008430054.1| - 1.9e-18 65.6 35.5 1.8e-06 27.8 3.6 4.2 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_16 PF13484.6 gi|530549501|ref|YP_008430054.1| - 1.1e-16 61.4 25.5 1.9e-05 25.5 0.1 4.1 3 1 1 4 4 4 4 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|530549501|ref|YP_008430054.1| - 1.2e-16 60.5 33.5 3e-08 33.7 11.3 3.9 2 2 1 3 3 3 3 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|530549501|ref|YP_008430054.1| - 3e-16 59.3 27.5 8e-10 38.7 7.2 2.8 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|530549501|ref|YP_008430054.1| - 4.7e-16 57.8 28.3 1.6e-05 24.7 1.2 4.2 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_10 PF13237.6 gi|530549501|ref|YP_008430054.1| - 1.5e-15 57.0 62.7 1.3e-07 31.6 10.8 3.1 1 1 3 4 4 4 4 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|530549501|ref|YP_008430054.1| - 5e-12 46.1 20.8 8.6e-06 26.1 7.5 3.4 3 1 0 3 3 3 3 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|530549501|ref|YP_008430054.1| - 5.7e-11 42.8 23.1 6.3e-05 23.4 10.4 3.6 3 1 1 4 4 4 4 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|530549501|ref|YP_008430054.1| - 3.6e-09 36.4 34.6 0.0039 17.6 2.3 4.2 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_13 PF13370.6 gi|530549501|ref|YP_008430054.1| - 2e-07 31.5 24.2 0.00068 20.1 0.2 4.2 4 0 0 4 4 4 3 4Fe-4S single cluster domain of Ferredoxin I Fer4_3 PF12798.7 gi|530549501|ref|YP_008430054.1| - 4.5e-07 30.4 45.9 0.0055 17.6 6.4 4.2 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_15 PF13459.6 gi|530549501|ref|YP_008430054.1| - 0.00022 21.9 28.0 0.22 12.3 0.8 4.3 3 1 1 4 4 4 3 4Fe-4S single cluster domain Fer4_22 PF17179.4 gi|530549501|ref|YP_008430054.1| - 0.0015 19.3 30.8 0.28 12.0 1.9 4.1 3 1 1 4 4 4 3 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|530549501|ref|YP_008430054.1| - 0.0047 17.1 31.8 0.22 11.7 3.3 4.0 1 1 2 3 3 3 2 4Fe-4S dicluster domain ETF_QO PF05187.13 gi|530549501|ref|YP_008430054.1| - 0.52 10.5 19.5 0.14 12.3 1.7 3.7 1 1 3 4 4 4 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S MNHE PF01899.16 gi|530549502|ref|YP_008430055.1| - 1.2e-37 128.9 0.1 1.3e-37 128.8 0.1 1.0 1 0 0 1 1 1 1 Na+/H+ ion antiporter subunit Rhomboid PF01694.22 gi|530549502|ref|YP_008430055.1| - 0.2 11.7 2.3 0.27 11.2 2.3 1.2 1 0 0 1 1 1 0 Rhomboid family MrpF_PhaF PF04066.13 gi|530549503|ref|YP_008430056.1| - 9.9e-18 64.3 9.0 9.9e-18 64.3 9.0 1.8 2 0 0 2 2 2 1 Multiple resistance and pH regulation protein F (MrpF / PhaF) MtN3_slv PF03083.16 gi|530549503|ref|YP_008430056.1| - 0.21 11.6 3.0 0.3 11.1 3.0 1.3 1 1 0 1 1 1 0 Sugar efflux transporter for intercellular exchange PhaG_MnhG_YufB PF03334.14 gi|530549504|ref|YP_008430057.1| - 9.2e-27 93.1 5.7 1.1e-26 92.8 5.7 1.1 1 0 0 1 1 1 1 Na+/H+ antiporter subunit Virul_fac_BrkB PF03631.15 gi|530549504|ref|YP_008430057.1| - 3.3e-05 23.6 4.8 3.6e-05 23.5 4.8 1.0 1 0 0 1 1 1 1 Virulence factor BrkB DUF4191 PF13829.6 gi|530549504|ref|YP_008430057.1| - 0.06 12.7 0.4 0.068 12.5 0.2 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4191) O-antigen_lig PF13425.6 gi|530549504|ref|YP_008430057.1| - 0.063 12.1 1.6 0.068 11.9 1.6 1.0 1 0 0 1 1 1 0 O-antigen ligase like membrane protein DUF2537 PF10801.8 gi|530549504|ref|YP_008430057.1| - 0.28 11.4 4.0 0.9 9.8 4.0 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF2537) SPT_ssu-like PF11779.8 gi|530549504|ref|YP_008430057.1| - 0.56 9.9 5.3 0.12 12.0 1.3 2.0 2 1 0 2 2 2 0 Small subunit of serine palmitoyltransferase-like DUF4040 PF13244.6 gi|530549505|ref|YP_008430058.1| - 9.1e-20 70.6 6.0 1.1e-19 70.3 6.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4040) CopD PF05425.13 gi|530549506|ref|YP_008430059.1| - 0.42 11.0 3.7 1.2 9.6 0.0 2.1 2 0 0 2 2 2 0 Copper resistance protein D MnhB PF04039.13 gi|530549507|ref|YP_008430060.1| - 2.5e-27 95.6 7.7 3.2e-27 95.3 7.7 1.1 1 0 0 1 1 1 1 Domain related to MnhB subunit of Na+/H+ antiporter DUF2105 PF09878.9 gi|530549507|ref|YP_008430060.1| - 0.0088 15.8 1.2 0.0088 15.8 1.2 1.6 2 0 0 2 2 2 1 Predicted membrane protein (DUF2105) DUF1515 PF07439.11 gi|530549507|ref|YP_008430060.1| - 0.088 12.8 0.0 0.13 12.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1515) Oxidored_q2 PF00420.24 gi|530549508|ref|YP_008430061.1| - 2.3e-29 101.1 3.6 2.7e-29 100.9 3.6 1.0 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Proton_antipo_M PF00361.20 gi|530549509|ref|YP_008430062.1| - 1.9e-54 184.8 24.0 1.9e-54 184.8 24.0 2.8 3 1 0 3 3 3 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|530549509|ref|YP_008430062.1| - 0.00017 21.6 1.5 0.00017 21.6 1.5 4.1 3 0 0 3 3 3 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus PRA1 PF03208.19 gi|530549510|ref|YP_008430063.1| - 0.07 12.7 0.0 0.13 11.9 0.0 1.5 1 1 0 1 1 1 0 PRA1 family protein BatD PF13584.6 gi|530549510|ref|YP_008430063.1| - 0.29 9.9 1.3 0.29 9.9 0.2 1.5 1 1 1 2 2 2 0 Oxygen tolerance DUF4064 PF13273.6 gi|530549510|ref|YP_008430063.1| - 0.95 9.8 6.7 1.4 9.3 1.2 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF4064) Oxidored_q6 PF01058.22 gi|530549511|ref|YP_008430064.1| - 5e-29 100.8 0.1 5.8e-29 100.6 0.1 1.0 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Complex1_30kDa PF00329.19 gi|530549512|ref|YP_008430065.1| - 2e-19 70.4 0.0 2.7e-19 70.0 0.0 1.1 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit DEK_C PF08766.11 gi|530549512|ref|YP_008430065.1| - 0.11 12.5 1.3 3.1 7.8 0.0 3.2 4 0 0 4 4 4 0 DEK C terminal domain DUF4863 PF16155.5 gi|530549512|ref|YP_008430065.1| - 0.11 12.4 0.0 0.21 11.4 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4863) Anticodon_1 PF08264.13 gi|530549512|ref|YP_008430065.1| - 0.16 11.9 0.4 0.71 9.8 0.0 2.1 2 1 0 2 2 2 0 Anticodon-binding domain of tRNA Skp1 PF01466.19 gi|530549512|ref|YP_008430065.1| - 0.41 10.8 4.5 2.6 8.2 0.0 2.6 3 0 0 3 3 3 0 Skp1 family, dimerisation domain Complex1_49kDa PF00346.19 gi|530549513|ref|YP_008430066.1| - 1.2e-62 211.5 0.0 7.5e-61 205.6 0.0 2.1 1 1 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NiFeSe_Hases PF00374.19 gi|530549513|ref|YP_008430066.1| - 2e-17 63.3 3.4 1e-13 51.0 0.0 3.3 2 1 0 3 3 3 3 Nickel-dependent hydrogenase NADHdh PF00146.21 gi|530549514|ref|YP_008430067.1| - 6.7e-66 222.6 24.0 8e-66 222.4 24.0 1.0 1 0 0 1 1 1 1 NADH dehydrogenase DUF997 PF06196.12 gi|530549514|ref|YP_008430067.1| - 8.6 6.5 15.3 4.2 7.4 2.6 3.3 3 0 0 3 3 3 0 Protein of unknown function (DUF997) Fer4_7 PF12838.7 gi|530549515|ref|YP_008430068.1| - 4e-14 52.9 19.6 2e-09 37.9 10.5 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|530549515|ref|YP_008430068.1| - 1.2e-13 50.3 11.2 4.2e-09 35.8 2.0 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|530549515|ref|YP_008430068.1| - 7.1e-11 42.1 7.2 1e-10 41.6 7.2 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|530549515|ref|YP_008430068.1| - 5.2e-10 39.3 5.7 9e-10 38.5 5.7 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|530549515|ref|YP_008430068.1| - 3.1e-09 36.4 10.8 1.4e-07 31.2 1.6 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|530549515|ref|YP_008430068.1| - 1.2e-08 34.9 8.7 1.9e-08 34.3 8.7 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|530549515|ref|YP_008430068.1| - 1.2e-08 34.6 12.7 5.5e-08 32.6 2.2 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|530549515|ref|YP_008430068.1| - 7.4e-06 26.8 12.9 0.0014 19.5 2.5 2.3 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 gi|530549515|ref|YP_008430068.1| - 2.5e-05 24.4 12.8 0.00046 20.5 2.4 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|530549515|ref|YP_008430068.1| - 6.2e-05 23.5 9.8 0.049 14.2 0.8 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|530549515|ref|YP_008430068.1| - 0.00013 22.6 17.7 0.038 14.9 4.8 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.6 gi|530549515|ref|YP_008430068.1| - 0.001 19.8 7.4 0.065 14.0 0.7 2.3 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_8 PF13183.6 gi|530549515|ref|YP_008430068.1| - 0.0018 18.7 10.3 0.2 12.2 1.3 2.2 1 1 2 3 3 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|530549515|ref|YP_008430068.1| - 0.014 15.9 11.9 0.082 13.5 2.8 2.2 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_18 PF13746.6 gi|530549515|ref|YP_008430068.1| - 0.022 14.9 10.5 0.18 12.0 10.6 1.9 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|530549515|ref|YP_008430068.1| - 0.16 12.8 8.1 0.52 11.2 0.9 2.2 2 0 0 2 2 2 0 4Fe-4S dicluster domain DUF72 PF01904.18 gi|530549517|ref|YP_008430070.1| - 1.7e-24 87.1 0.5 2.2e-24 86.8 0.5 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF72 WGR PF05406.15 gi|530549517|ref|YP_008430070.1| - 0.37 10.9 2.7 18 5.5 0.1 2.7 3 0 0 3 3 3 0 WGR domain DUF72 PF01904.18 gi|530549518|ref|YP_008430071.1| - 4.5e-09 36.8 0.7 5.4e-09 36.5 0.7 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF72 RHH_1 PF01402.21 gi|530549519|ref|YP_008430072.1| - 0.015 15.3 0.3 0.027 14.4 0.3 1.4 1 0 0 1 1 1 0 Ribbon-helix-helix protein, copG family DDE_Tnp_1 PF01609.21 gi|530549520|ref|YP_008430073.1| - 0.13 11.9 0.0 0.13 11.9 0.0 1.2 1 1 0 1 1 1 0 Transposase DDE domain DDE_Tnp_IS66 PF03050.14 gi|530549521|ref|YP_008430074.1| - 0.0054 16.2 0.0 0.0058 16.1 0.0 1.1 1 0 0 1 1 1 1 Transposase IS66 family AAA_17 PF13207.6 gi|530549522|ref|YP_008430075.1| - 7.6e-21 75.0 0.0 1.1e-20 74.4 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|530549522|ref|YP_008430075.1| - 9.4e-11 42.4 0.0 1.6e-10 41.6 0.0 1.4 1 0 0 1 1 1 1 AAA domain ADK PF00406.22 gi|530549522|ref|YP_008430075.1| - 2.1e-07 31.2 0.0 2.2e-07 31.1 0.0 1.2 1 0 0 1 1 1 1 Adenylate kinase AAA_33 PF13671.6 gi|530549522|ref|YP_008430075.1| - 0.00086 19.5 0.0 0.002 18.3 0.0 1.6 1 1 0 1 1 1 1 AAA domain Zeta_toxin PF06414.12 gi|530549522|ref|YP_008430075.1| - 0.027 13.7 0.0 0.035 13.4 0.0 1.2 1 0 0 1 1 1 0 Zeta toxin ABC_tran PF00005.27 gi|530549522|ref|YP_008430075.1| - 0.11 13.0 0.0 0.48 10.9 0.0 1.9 1 1 0 1 1 1 0 ABC transporter PI-TkoII_IV PF18714.1 gi|530549523|ref|YP_008430076.1| - 1.5e-73 245.2 5.2 6.8e-73 243.1 5.2 2.3 1 0 0 1 1 1 1 DNA polymerase II intein Domain IV DNA_pol_B PF00136.21 gi|530549523|ref|YP_008430076.1| - 2.4e-64 217.7 0.7 1.7e-27 96.3 0.3 3.3 3 0 0 3 3 3 3 DNA polymerase family B DNA_pol_B_exo1 PF03104.19 gi|530549523|ref|YP_008430076.1| - 1.3e-49 169.2 3.4 6e-37 127.5 0.0 3.2 2 1 1 3 3 3 2 DNA polymerase family B, exonuclease domain Intein_splicing PF14890.6 gi|530549523|ref|YP_008430076.1| - 3.2e-49 166.3 4.9 1.2e-33 115.9 0.8 2.8 2 0 0 2 2 2 2 Intein splicing domain LAGLIDADG_3 PF14528.6 gi|530549523|ref|YP_008430076.1| - 1.9e-27 95.4 2.4 7.2e-13 48.7 0.1 5.1 4 0 0 4 4 4 3 LAGLIDADG-like domain DNA_pol_B_exo2 PF10108.9 gi|530549523|ref|YP_008430076.1| - 6.6e-10 39.0 0.0 1.4e-09 37.9 0.0 1.5 1 0 0 1 1 1 1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB RNase_H_2 PF13482.6 gi|530549523|ref|YP_008430076.1| - 1.7e-07 31.4 1.9 3e-07 30.6 0.1 2.5 2 0 0 2 2 2 1 RNase_H superfamily Hom_end PF05204.14 gi|530549523|ref|YP_008430076.1| - 0.0019 18.3 0.0 0.05 13.8 0.0 2.9 3 0 0 3 3 3 1 Homing endonuclease Methyltr_RsmB-F PF01189.17 gi|530549524|ref|YP_008430077.1| - 4.3e-54 183.2 0.0 6.9e-54 182.5 0.0 1.3 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F NusB PF01029.18 gi|530549524|ref|YP_008430077.1| - 2.2e-18 66.8 0.9 4.7e-18 65.7 0.9 1.6 1 0 0 1 1 1 1 NusB family Methyltransf_31 PF13847.6 gi|530549524|ref|YP_008430077.1| - 2.9e-15 56.4 0.0 1.1e-14 54.5 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|530549524|ref|YP_008430077.1| - 2.2e-11 43.5 0.2 6e-10 38.8 0.0 2.5 2 1 0 2 2 2 1 ubiE/COQ5 methyltransferase family PCMT PF01135.19 gi|530549524|ref|YP_008430077.1| - 8.8e-11 42.0 0.1 7e-10 39.0 0.0 2.2 2 0 0 2 2 2 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_25 PF13649.6 gi|530549524|ref|YP_008430077.1| - 1.3e-08 35.4 0.0 1.3e-07 32.2 0.0 2.6 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|530549524|ref|YP_008430077.1| - 2.9e-07 30.2 0.2 4.7e-05 23.0 0.1 2.8 2 1 0 2 2 2 1 Methyltransferase small domain FtsJ PF01728.19 gi|530549524|ref|YP_008430077.1| - 1.8e-05 24.9 0.0 3.5e-05 24.0 0.0 1.4 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltr_RsmF_N PF17125.5 gi|530549524|ref|YP_008430077.1| - 0.00034 21.1 0.0 0.0017 18.8 0.0 2.2 2 0 0 2 2 2 1 N-terminal domain of 16S rRNA methyltransferase RsmF Fibrillarin PF01269.17 gi|530549524|ref|YP_008430077.1| - 0.00087 18.5 0.3 0.0025 16.9 0.0 1.8 2 0 0 2 2 2 1 Fibrillarin Methyltransf_11 PF08241.12 gi|530549524|ref|YP_008430077.1| - 0.0039 17.8 0.0 0.016 15.9 0.0 2.2 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_4 PF02390.17 gi|530549524|ref|YP_008430077.1| - 0.0049 16.4 0.3 0.017 14.6 0.2 2.0 2 1 0 2 2 2 1 Putative methyltransferase Methyltransf_12 PF08242.12 gi|530549524|ref|YP_008430077.1| - 0.0097 16.6 0.0 0.11 13.3 0.0 2.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.10 gi|530549524|ref|YP_008430077.1| - 0.06 12.9 0.1 0.39 10.3 0.0 2.3 2 0 0 2 2 2 0 RNA cap guanine-N2 methyltransferase GldH_lipo PF14109.6 gi|530549524|ref|YP_008430077.1| - 0.077 13.8 0.1 0.33 11.7 0.1 1.9 2 0 0 2 2 2 0 GldH lipoprotein DUF938 PF06080.12 gi|530549524|ref|YP_008430077.1| - 0.083 12.6 0.0 0.15 11.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF938) DUF4581 PF15167.6 gi|530549524|ref|YP_008430077.1| - 0.15 12.2 0.0 1.6 8.9 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4581) AMMECR1 PF01871.17 gi|530549526|ref|YP_008430079.1| - 1.1e-54 184.6 0.0 1.2e-54 184.4 0.0 1.0 1 0 0 1 1 1 1 AMMECR1 Thiamine_BP PF01910.17 gi|530549527|ref|YP_008430080.1| - 9.1e-31 105.6 0.2 1e-30 105.5 0.2 1.0 1 0 0 1 1 1 1 Thiamine-binding protein DUF373 PF04123.13 gi|530549528|ref|YP_008430081.1| - 2.2e-98 329.8 8.5 2.6e-98 329.6 8.5 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF373) DUF443 PF04276.12 gi|530549528|ref|YP_008430081.1| - 0.047 13.5 2.8 0.12 12.2 2.8 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF443) Spc7 PF08317.11 gi|530549529|ref|YP_008430082.1| - 0.00032 19.7 17.5 0.00032 19.7 17.5 3.2 2 1 1 3 3 3 2 Spc7 kinetochore protein HemX PF04375.14 gi|530549529|ref|YP_008430082.1| - 0.021 14.1 26.1 0.038 13.3 3.5 3.3 1 1 0 3 3 3 0 HemX, putative uroporphyrinogen-III C-methyltransferase Baculo_PEP_C PF04513.12 gi|530549529|ref|YP_008430082.1| - 0.035 14.1 12.7 1.7 8.7 0.4 4.3 2 2 2 4 4 4 0 Baculovirus polyhedron envelope protein, PEP, C terminus Globin PF00042.22 gi|530549529|ref|YP_008430082.1| - 0.053 14.1 5.0 2.1 9.0 0.4 4.2 2 2 0 3 3 3 0 Globin BLOC1_2 PF10046.9 gi|530549529|ref|YP_008430082.1| - 0.06 13.7 48.8 0.76 10.1 4.8 5.5 3 2 2 5 5 5 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Bacillus_HBL PF05791.11 gi|530549529|ref|YP_008430082.1| - 0.15 11.8 31.7 0.23 11.3 4.6 4.0 2 1 1 3 3 3 0 Bacillus haemolytic enterotoxin (HBL) TraF_2 PF13729.6 gi|530549529|ref|YP_008430082.1| - 0.16 11.3 5.5 7.6 5.8 0.5 3.6 2 2 1 4 4 4 0 F plasmid transfer operon, TraF, protein DUF948 PF06103.11 gi|530549529|ref|YP_008430082.1| - 0.41 10.9 17.6 0.62 10.4 1.0 4.9 2 2 2 4 4 4 0 Bacterial protein of unknown function (DUF948) Laminin_II PF06009.12 gi|530549529|ref|YP_008430082.1| - 0.58 10.2 39.6 0.22 11.6 8.1 3.8 3 2 0 3 3 3 0 Laminin Domain II DUF4349 PF14257.6 gi|530549529|ref|YP_008430082.1| - 0.7 9.3 13.9 0.33 10.4 0.8 3.0 3 0 0 3 3 3 0 Domain of unknown function (DUF4349) MscS_porin PF12795.7 gi|530549529|ref|YP_008430082.1| - 0.77 9.3 38.3 1.3 8.6 6.3 4.1 3 1 0 3 3 3 0 Mechanosensitive ion channel porin domain Y_phosphatase3 PF13350.6 gi|530549529|ref|YP_008430082.1| - 0.83 9.6 6.7 3.7 7.5 0.7 2.8 2 1 0 2 2 2 0 Tyrosine phosphatase family ADIP PF11559.8 gi|530549529|ref|YP_008430082.1| - 1.9 8.6 39.2 0.099 12.7 9.6 3.5 3 0 0 3 3 3 0 Afadin- and alpha -actinin-Binding SpecificRecomb PF10136.9 gi|530549529|ref|YP_008430082.1| - 2.3 6.4 10.2 4.1 5.6 10.2 1.4 1 0 0 1 1 1 0 Site-specific recombinase FliD_C PF07195.12 gi|530549529|ref|YP_008430082.1| - 3.6 6.9 31.3 0.12 11.8 7.9 3.7 1 1 0 2 2 2 0 Flagellar hook-associated protein 2 C-terminus AAA_13 PF13166.6 gi|530549529|ref|YP_008430082.1| - 4.1 5.9 50.4 0.085 11.5 31.7 2.1 1 1 1 2 2 2 0 AAA domain EzrA PF06160.12 gi|530549529|ref|YP_008430082.1| - 4.3 5.4 62.8 0.02 13.1 23.8 3.0 1 1 0 2 2 2 0 Septation ring formation regulator, EzrA FOXP-CC PF16159.5 gi|530549529|ref|YP_008430082.1| - 6.2 7.5 15.1 3.1 8.5 0.8 4.0 4 0 0 4 4 4 0 FOXP coiled-coil domain PI3K_P85_iSH2 PF16454.5 gi|530549529|ref|YP_008430082.1| - 7 6.2 55.3 0.77 9.3 12.5 4.4 2 1 2 4 4 4 0 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain WXG100 PF06013.12 gi|530549529|ref|YP_008430082.1| - 7.4 6.9 13.2 2.3 8.5 0.5 4.8 6 2 0 6 6 4 0 Proteins of 100 residues with WXG AP_endonuc_2 PF01261.24 gi|530549530|ref|YP_008430083.1| - 8.9e-21 74.3 0.1 1.2e-20 73.9 0.1 1.2 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel Amidohydro_1 PF01979.20 gi|530549530|ref|YP_008430083.1| - 0.00089 18.7 0.2 0.013 14.8 0.0 2.2 1 1 0 2 2 2 1 Amidohydrolase family DUF5446 PF17522.2 gi|530549530|ref|YP_008430083.1| - 0.0095 16.1 0.8 0.049 13.8 0.1 2.5 2 1 1 3 3 3 1 Family of unknown function (DUF5446) DUF2345 PF10106.9 gi|530549530|ref|YP_008430083.1| - 0.055 13.3 0.0 0.092 12.6 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2345) Peptidase_M29 PF02073.15 gi|530549530|ref|YP_008430083.1| - 0.06 12.1 0.1 1.1 7.9 0.0 2.5 2 1 1 3 3 3 0 Thermophilic metalloprotease (M29) Aminotran_5 PF00266.19 gi|530549531|ref|YP_008430084.1| - 2.2e-30 105.9 0.0 5e-30 104.7 0.0 1.5 1 1 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|530549531|ref|YP_008430084.1| - 0.00018 20.1 0.0 0.00026 19.7 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.17 gi|530549531|ref|YP_008430084.1| - 0.00061 19.2 0.0 0.001 18.4 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_1_2 PF00155.21 gi|530549531|ref|YP_008430084.1| - 0.014 14.6 0.0 0.15 11.2 0.0 2.0 2 0 0 2 2 2 0 Aminotransferase class I and II Aminotran_3 PF00202.21 gi|530549531|ref|YP_008430084.1| - 0.14 10.8 0.0 2.9 6.4 0.0 2.1 2 0 0 2 2 2 0 Aminotransferase class-III Pyridoxal_deC PF00282.19 gi|530549531|ref|YP_008430084.1| - 0.17 10.6 0.0 0.26 9.9 0.0 1.2 1 0 0 1 1 1 0 Pyridoxal-dependent decarboxylase conserved domain Peptidase_S58 PF03576.14 gi|530549532|ref|YP_008430085.1| - 4.7e-120 400.6 0.6 5.4e-120 400.4 0.6 1.0 1 0 0 1 1 1 1 Peptidase family S58 CobA_CobO_BtuR PF02572.15 gi|530549533|ref|YP_008430086.1| - 2.8e-61 206.8 0.2 3.2e-61 206.6 0.2 1.0 1 0 0 1 1 1 1 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP RecA PF00154.21 gi|530549533|ref|YP_008430086.1| - 0.013 15.0 0.0 0.021 14.3 0.0 1.3 1 0 0 1 1 1 0 recA bacterial DNA recombination protein IstB_IS21 PF01695.17 gi|530549533|ref|YP_008430086.1| - 0.07 12.9 0.1 3.8 7.2 0.0 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein PGM_PMM_II PF02879.16 gi|530549533|ref|YP_008430086.1| - 0.11 13.2 0.1 0.34 11.6 0.0 2.0 1 1 1 2 2 2 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AAA_25 PF13481.6 gi|530549533|ref|YP_008430086.1| - 0.12 11.9 0.2 0.4 10.2 0.2 1.8 1 1 0 1 1 1 0 AAA domain ResIII PF04851.15 gi|530549533|ref|YP_008430086.1| - 0.48 10.4 1.6 7.9 6.5 1.6 2.1 1 1 0 1 1 1 0 Type III restriction enzyme, res subunit UPF0147 PF03685.13 gi|530549534|ref|YP_008430087.1| - 2.5e-33 114.0 3.6 2.7e-33 113.9 3.6 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0147) RRF PF01765.19 gi|530549534|ref|YP_008430087.1| - 0.039 13.9 0.7 0.045 13.7 0.7 1.1 1 0 0 1 1 1 0 Ribosome recycling factor DUF86 PF01934.17 gi|530549534|ref|YP_008430087.1| - 0.057 13.3 0.4 0.068 13.0 0.3 1.2 1 1 0 1 1 1 0 Protein of unknown function DUF86 HEAT_PBS PF03130.16 gi|530549534|ref|YP_008430087.1| - 0.26 12.1 2.3 7.9 7.5 0.0 3.3 4 0 0 4 4 4 0 PBS lyase HEAT-like repeat Aldolase_II PF00596.21 gi|530549535|ref|YP_008430088.1| - 4.7e-46 157.1 0.0 5.5e-46 156.8 0.0 1.0 1 0 0 1 1 1 1 Class II Aldolase and Adducin N-terminal domain A2L_zn_ribbon PF08792.10 gi|530549536|ref|YP_008430089.1| - 0.016 14.9 0.7 0.038 13.7 0.7 1.6 1 0 0 1 1 1 0 A2L zinc ribbon domain RPA_interact_C PF14768.6 gi|530549536|ref|YP_008430089.1| - 0.029 14.9 0.2 0.042 14.4 0.2 1.3 1 0 0 1 1 1 0 Replication protein A interacting C-terminal zf-RING_7 PF02591.15 gi|530549536|ref|YP_008430089.1| - 0.034 14.3 0.0 3.7 7.8 0.0 2.3 2 0 0 2 2 2 0 C4-type zinc ribbon domain zinc_ribbon_2 PF13240.6 gi|530549536|ref|YP_008430089.1| - 0.2 11.4 4.0 3.3 7.6 0.2 2.6 3 0 0 3 3 3 0 zinc-ribbon domain zf-RRN7 PF11781.8 gi|530549536|ref|YP_008430089.1| - 0.84 9.4 3.4 1 9.1 0.1 2.2 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 DctM PF06808.12 gi|530549537|ref|YP_008430090.1| - 7.5e-24 84.3 17.0 8.3e-24 84.2 17.0 1.0 1 0 0 1 1 1 1 Tripartite ATP-independent periplasmic transporter, DctM component DctM PF06808.12 gi|530549538|ref|YP_008430091.1| - 1.1e-50 172.7 18.6 1.4e-50 172.4 18.6 1.0 1 0 0 1 1 1 1 Tripartite ATP-independent periplasmic transporter, DctM component DctQ PF04290.12 gi|530549539|ref|YP_008430092.1| - 2.5e-21 76.0 8.6 3.2e-21 75.6 8.6 1.1 1 0 0 1 1 1 1 Tripartite ATP-independent periplasmic transporters, DctQ component DHHC PF01529.20 gi|530549539|ref|YP_008430092.1| - 2.7 8.1 5.6 11 6.1 2.9 2.5 2 1 0 2 2 2 0 DHHC palmitoyltransferase DctP PF03480.13 gi|530549540|ref|YP_008430093.1| - 1.4e-46 159.1 0.1 2.2e-46 158.5 0.1 1.3 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein, family 7 DUF3106 PF11304.8 gi|530549540|ref|YP_008430093.1| - 0.089 13.3 0.2 1 9.9 0.2 2.2 1 1 0 1 1 1 0 Protein of unknown function (DUF3106) Cnn_1N PF07989.11 gi|530549540|ref|YP_008430093.1| - 0.16 12.1 0.0 0.34 11.1 0.0 1.5 1 0 0 1 1 1 0 Centrosomin N-terminal motif 1 DDE_Tnp_1_2 PF13586.6 gi|530549541|ref|YP_008430094.1| - 0.098 13.0 0.0 0.13 12.7 0.0 1.1 1 0 0 1 1 1 0 Transposase DDE domain DDE_Tnp_IS66 PF03050.14 gi|530549542|ref|YP_008430095.1| - 0.0042 16.6 0.0 0.0045 16.5 0.0 1.1 1 0 0 1 1 1 1 Transposase IS66 family Ribosomal_S6e PF01092.19 gi|530549543|ref|YP_008430096.1| - 2.3e-38 131.0 0.1 7.8e-38 129.3 0.1 1.7 1 1 0 1 1 1 1 Ribosomal protein S6e GTP_EFTU PF00009.27 gi|530549544|ref|YP_008430097.1| - 4.8e-32 111.1 0.4 2.9e-31 108.5 0.4 1.9 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain eIF2_C PF09173.11 gi|530549544|ref|YP_008430097.1| - 1.1e-31 108.9 0.1 2.4e-31 107.8 0.1 1.6 1 0 0 1 1 1 1 Initiation factor eIF2 gamma, C terminal GTP_EFTU_D2 PF03144.25 gi|530549544|ref|YP_008430097.1| - 9.8e-11 41.9 1.5 2.6e-10 40.5 1.5 1.8 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|530549544|ref|YP_008430097.1| - 5.3e-05 23.3 0.0 8.8e-05 22.6 0.0 1.4 1 0 0 1 1 1 1 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 gi|530549544|ref|YP_008430097.1| - 6.8e-05 22.8 0.1 0.00094 19.1 0.0 2.2 2 0 0 2 2 2 1 RsgA GTPase Nop10p PF04135.12 gi|530549544|ref|YP_008430097.1| - 0.00031 20.7 0.8 0.00056 19.9 0.8 1.4 1 0 0 1 1 1 1 Nucleolar RNA-binding protein, Nop10p family PduV-EutP PF10662.9 gi|530549544|ref|YP_008430097.1| - 0.00065 19.5 0.4 0.42 10.3 0.0 2.4 2 0 0 2 2 2 2 Ethanolamine utilisation - propanediol utilisation RecR PF02132.15 gi|530549544|ref|YP_008430097.1| - 0.002 17.7 0.3 0.0051 16.4 0.3 1.7 1 0 0 1 1 1 1 RecR protein PolC_DP2 PF03833.13 gi|530549544|ref|YP_008430097.1| - 0.0022 15.9 0.0 0.0029 15.6 0.0 1.1 1 0 0 1 1 1 1 DNA polymerase II large subunit DP2 DUF35_N PF12172.8 gi|530549544|ref|YP_008430097.1| - 0.019 14.8 2.1 0.035 14.0 2.1 1.5 1 0 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) FeoB_N PF02421.18 gi|530549544|ref|YP_008430097.1| - 0.028 14.0 0.5 4.9 6.7 0.1 2.4 2 0 0 2 2 2 0 Ferrous iron transport protein B HypA PF01155.19 gi|530549544|ref|YP_008430097.1| - 0.031 14.3 0.0 0.075 13.0 0.0 1.7 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA PhnA_Zn_Ribbon PF08274.12 gi|530549544|ref|YP_008430097.1| - 0.043 13.8 0.2 0.36 10.8 0.0 2.2 2 0 0 2 2 2 0 PhnA Zinc-Ribbon NRDD PF13597.6 gi|530549544|ref|YP_008430097.1| - 0.061 12.1 0.2 0.087 11.6 0.2 1.2 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase zf-RING_7 PF02591.15 gi|530549544|ref|YP_008430097.1| - 0.069 13.4 2.4 2.8 8.2 0.1 2.6 2 0 0 2 2 2 0 C4-type zinc ribbon domain zf-ribbon_3 PF13248.6 gi|530549544|ref|YP_008430097.1| - 0.076 12.4 6.9 0.19 11.2 6.9 1.7 1 1 0 1 1 1 0 zinc-ribbon domain G-alpha PF00503.20 gi|530549544|ref|YP_008430097.1| - 0.085 12.0 0.1 0.13 11.4 0.1 1.3 1 0 0 1 1 1 0 G-protein alpha subunit zinc_ribbon_2 PF13240.6 gi|530549544|ref|YP_008430097.1| - 0.14 11.9 7.3 0.38 10.5 7.3 1.8 1 1 0 1 1 1 0 zinc-ribbon domain zf-tcix PF14952.6 gi|530549544|ref|YP_008430097.1| - 0.2 11.3 6.2 0.32 10.6 0.2 2.3 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding zf-NADH-PPase PF09297.11 gi|530549544|ref|YP_008430097.1| - 0.27 10.9 2.4 5.8 6.7 0.2 2.4 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Zn-ribbon_8 PF09723.10 gi|530549544|ref|YP_008430097.1| - 0.67 10.1 4.4 8.4 6.6 0.4 2.7 1 1 1 2 2 2 0 Zinc ribbon domain TF_Zn_Ribbon PF08271.12 gi|530549544|ref|YP_008430097.1| - 1.6 8.3 3.9 5.9 6.5 0.2 2.4 2 0 0 2 2 2 0 TFIIB zinc-binding PIN_9 PF18477.1 gi|530549545|ref|YP_008430098.1| - 1.6e-32 112.3 0.2 1.9e-32 112.0 0.2 1.0 1 0 0 1 1 1 1 PIN like domain Fcf1 PF04900.12 gi|530549545|ref|YP_008430098.1| - 2.9e-06 27.6 0.0 4.4e-06 27.0 0.0 1.3 1 0 0 1 1 1 1 Fcf1 PIN_4 PF13638.6 gi|530549545|ref|YP_008430098.1| - 0.00035 20.9 1.5 0.43 10.9 0.4 2.2 1 1 1 2 2 2 2 PIN domain PIN PF01850.21 gi|530549545|ref|YP_008430098.1| - 0.041 14.4 0.2 0.46 11.0 0.1 2.0 1 1 1 2 2 2 0 PIN domain Ins134_P3_kin_N PF17927.1 gi|530549545|ref|YP_008430098.1| - 0.058 13.8 0.3 3.3 8.2 0.0 2.3 1 1 1 2 2 2 0 Inositol 1,3,4-trisphosphate 5/6-kinase pre-ATP-grasp domain PIN_12 PF16289.5 gi|530549545|ref|YP_008430098.1| - 0.071 13.6 0.2 0.28 11.7 0.2 1.8 1 1 0 1 1 1 0 PIN domain SMC_N PF02463.19 gi|530549546|ref|YP_008430099.1| - 3.3e-68 229.4 49.7 2.8e-66 223.1 49.7 3.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain SMC_hinge PF06470.13 gi|530549546|ref|YP_008430099.1| - 1.3e-32 112.6 1.2 5.2e-32 110.6 0.1 2.7 2 0 0 2 2 2 1 SMC proteins Flexible Hinge Domain AAA_15 PF13175.6 gi|530549546|ref|YP_008430099.1| - 4.5e-19 69.4 72.9 1.5e-16 61.1 0.0 4.4 2 2 2 4 4 4 2 AAA ATPase domain AAA_23 PF13476.6 gi|530549546|ref|YP_008430099.1| - 2.8e-16 60.6 20.7 2.8e-16 60.6 20.7 8.5 2 2 3 5 5 2 1 AAA domain AAA_21 PF13304.6 gi|530549546|ref|YP_008430099.1| - 9.4e-10 38.8 35.8 1.3e-05 25.2 0.0 4.8 3 2 0 3 3 2 2 AAA domain, putative AbiEii toxin, Type IV TA system APG6_N PF17675.1 gi|530549546|ref|YP_008430099.1| - 2.9e-08 34.3 185.3 0.00013 22.5 29.3 9.7 2 2 6 8 8 8 3 Apg6 coiled-coil region Spc7 PF08317.11 gi|530549546|ref|YP_008430099.1| - 2.8e-07 29.7 166.4 0.0018 17.2 26.4 8.3 2 2 8 10 10 10 7 Spc7 kinetochore protein ATG16 PF08614.11 gi|530549546|ref|YP_008430099.1| - 7.1e-06 26.4 155.5 0.012 15.9 20.9 7.9 2 2 5 7 7 7 4 Autophagy protein 16 (ATG16) AAA_29 PF13555.6 gi|530549546|ref|YP_008430099.1| - 1.1e-05 25.0 0.0 2.4e-05 24.0 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain MscS_porin PF12795.7 gi|530549546|ref|YP_008430099.1| - 1.8e-05 24.4 110.3 0.00011 21.9 9.8 6.7 2 2 4 6 6 6 4 Mechanosensitive ion channel porin domain AAA_13 PF13166.6 gi|530549546|ref|YP_008430099.1| - 2.5e-05 23.1 30.0 2.5e-05 23.1 30.0 6.9 4 2 3 8 8 8 3 AAA domain ABC_tran_CTD PF16326.5 gi|530549546|ref|YP_008430099.1| - 6.7e-05 23.1 7.0 6.7e-05 23.1 7.0 13.5 3 3 8 13 13 11 2 ABC transporter C-terminal domain EzrA PF06160.12 gi|530549546|ref|YP_008430099.1| - 0.00043 18.6 34.6 0.00043 18.6 34.6 6.4 2 2 2 4 4 4 2 Septation ring formation regulator, EzrA Laminin_I PF06008.14 gi|530549546|ref|YP_008430099.1| - 0.00069 19.4 23.3 0.00069 19.4 23.3 5.9 2 2 3 5 5 5 2 Laminin Domain I Atg14 PF10186.9 gi|530549546|ref|YP_008430099.1| - 0.00084 18.5 137.9 0.0016 17.6 14.2 6.8 2 2 5 7 7 7 4 Vacuolar sorting 38 and autophagy-related subunit 14 DASH_Ask1 PF08655.10 gi|530549546|ref|YP_008430099.1| - 0.00085 19.2 1.1 8.2 6.4 0.0 4.6 4 0 0 4 4 4 0 DASH complex subunit Ask1 GAS PF13851.6 gi|530549546|ref|YP_008430099.1| - 0.0018 17.7 14.3 0.0018 17.7 14.3 8.4 2 2 5 8 8 8 3 Growth-arrest specific micro-tubule binding CENP-F_leu_zip PF10473.9 gi|530549546|ref|YP_008430099.1| - 0.0052 16.8 23.8 0.0052 16.8 23.8 7.7 2 2 5 7 7 6 3 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF5082 PF16888.5 gi|530549546|ref|YP_008430099.1| - 0.0059 16.9 7.3 0.0059 16.9 7.3 11.3 4 4 4 8 8 6 1 Domain of unknown function (DUF5082) DUF1664 PF07889.12 gi|530549546|ref|YP_008430099.1| - 0.019 15.0 93.4 0.083 12.9 2.0 10.1 2 2 6 10 10 10 0 Protein of unknown function (DUF1664) Baculo_PEP_C PF04513.12 gi|530549546|ref|YP_008430099.1| - 0.024 14.7 41.1 0.14 12.2 0.3 7.0 3 2 4 7 7 7 0 Baculovirus polyhedron envelope protein, PEP, C terminus ADIP PF11559.8 gi|530549546|ref|YP_008430099.1| - 0.58 10.2 135.6 0.047 13.8 11.4 9.4 2 2 6 9 9 7 0 Afadin- and alpha -actinin-Binding Seryl_tRNA_N PF02403.22 gi|530549546|ref|YP_008430099.1| - 3.1 8.1 152.3 0.32 11.2 20.1 9.9 3 2 5 9 9 9 0 Seryl-tRNA synthetase N-terminal domain IFT57 PF10498.9 gi|530549546|ref|YP_008430099.1| - 3.2 6.6 117.3 0.026 13.5 10.7 7.3 3 2 5 8 8 8 0 Intra-flagellar transport protein 57 DUF4201 PF13870.6 gi|530549546|ref|YP_008430099.1| - 3.4 7.4 157.4 0.56 9.9 26.7 8.8 2 2 7 9 9 8 0 Domain of unknown function (DUF4201) Flagellin_C PF00700.21 gi|530549546|ref|YP_008430099.1| - 4.8 7.6 14.4 12 6.3 0.4 5.8 5 2 1 6 6 5 0 Bacterial flagellin C-terminal helical region TMPIT PF07851.13 gi|530549546|ref|YP_008430099.1| - 5.9 6.0 113.4 0.35 10.1 14.0 7.6 3 2 5 8 8 8 0 TMPIT-like protein DUF948 PF06103.11 gi|530549546|ref|YP_008430099.1| - 8.5 6.7 47.1 3.5 8.0 0.6 9.2 3 2 4 8 8 8 0 Bacterial protein of unknown function (DUF948) SMC_ScpA PF02616.14 gi|530549547|ref|YP_008430100.1| - 1.3e-18 67.8 4.1 1.5e-11 44.7 2.8 2.1 1 1 1 2 2 2 2 Segregation and condensation protein ScpA Rad21_Rec8 PF04824.16 gi|530549547|ref|YP_008430100.1| - 0.00013 21.2 0.0 0.00022 20.5 0.0 1.4 1 0 0 1 1 1 1 Conserved region of Rad21 / Rec8 like protein CNDH2_C PF16858.5 gi|530549547|ref|YP_008430100.1| - 0.00055 19.9 0.3 0.0036 17.2 0.0 2.0 1 1 1 2 2 2 1 Condensin II complex subunit CAP-H2 or CNDH2, C-term DUF4470 PF14737.6 gi|530549547|ref|YP_008430100.1| - 0.0011 19.2 0.1 0.1 12.8 0.0 2.4 2 0 0 2 2 2 1 Domain of unknown function (DUF4470) CofC PF01983.16 gi|530549548|ref|YP_008430101.1| - 0.00097 18.4 0.1 0.0016 17.7 0.1 1.2 1 0 0 1 1 1 1 Guanylyl transferase CofC like MucB_RseB PF03888.14 gi|530549548|ref|YP_008430101.1| - 0.038 13.5 0.0 0.052 13.1 0.0 1.2 1 0 0 1 1 1 0 MucB/RseB N-terminal domain zf-CW PF07496.15 gi|530549548|ref|YP_008430101.1| - 0.1 12.6 0.4 0.19 11.8 0.4 1.4 1 0 0 1 1 1 0 CW-type Zinc Finger Inositol_P PF00459.25 gi|530549549|ref|YP_008430102.1| - 2.2e-33 115.9 0.0 2.8e-33 115.6 0.0 1.2 1 0 0 1 1 1 1 Inositol monophosphatase family FBPase PF00316.20 gi|530549549|ref|YP_008430102.1| - 0.00014 21.4 0.0 0.00024 20.7 0.0 1.3 1 0 0 1 1 1 1 Fructose-1-6-bisphosphatase, N-terminal domain DUF63 PF01889.17 gi|530549550|ref|YP_008430103.1| - 3.7e-88 296.3 16.8 4.1e-88 296.1 16.8 1.0 1 0 0 1 1 1 1 Membrane protein of unknown function DUF63 BofA PF07441.11 gi|530549550|ref|YP_008430103.1| - 0.23 11.7 5.5 0.18 12.0 0.9 3.0 2 1 0 2 2 2 0 SigmaK-factor processing regulatory protein BofA Fe-ADH_2 PF13685.6 gi|530549551|ref|YP_008430104.1| - 4.9e-74 249.2 0.8 6.1e-74 248.9 0.8 1.1 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.19 gi|530549551|ref|YP_008430104.1| - 1.4e-28 99.8 0.7 3e-27 95.4 0.7 2.0 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.20 gi|530549551|ref|YP_008430104.1| - 2.5e-10 40.0 0.8 1e-09 38.0 0.8 1.8 1 1 0 1 1 1 1 3-dehydroquinate synthase PrpR_N PF06506.11 gi|530549551|ref|YP_008430104.1| - 0.018 14.6 0.2 0.21 11.2 0.0 2.4 3 0 0 3 3 3 0 Propionate catabolism activator UPF0179 PF03684.13 gi|530549552|ref|YP_008430105.1| - 3.3e-42 143.7 0.1 3.7e-42 143.5 0.1 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0179) CT_A_B PF02626.15 gi|530549553|ref|YP_008430106.1| - 2.7e-88 296.0 0.0 3.1e-88 295.8 0.0 1.0 1 0 0 1 1 1 1 Carboxyltransferase domain, subdomain A and B CT_C_D PF02682.16 gi|530549554|ref|YP_008430107.1| - 3.3e-77 258.8 0.0 3.9e-77 258.6 0.0 1.0 1 0 0 1 1 1 1 Carboxyltransferase domain, subdomain C and D PIN PF01850.21 gi|530549555|ref|YP_008430108.1| - 5.2e-19 68.9 0.4 6.2e-19 68.7 0.4 1.1 1 0 0 1 1 1 1 PIN domain DUF5615 PF18480.1 gi|530549555|ref|YP_008430108.1| - 0.0065 16.2 0.0 0.013 15.3 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF5615) DUF4411 PF14367.6 gi|530549555|ref|YP_008430108.1| - 0.012 15.5 0.1 0.016 15.1 0.1 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4411) Fer4_12 PF13353.6 gi|530549555|ref|YP_008430108.1| - 0.13 12.5 0.0 0.21 11.8 0.0 1.3 1 1 0 1 1 1 0 4Fe-4S single cluster domain DUF104 PF01954.16 gi|530549556|ref|YP_008430109.1| - 9.6e-11 42.0 5.4 1.2e-10 41.6 5.4 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF104 LamB_YcsF PF03746.16 gi|530549557|ref|YP_008430110.1| - 4.5e-106 353.9 0.0 5.1e-106 353.7 0.0 1.0 1 0 0 1 1 1 1 LamB/YcsF family PIN_6 PF17146.4 gi|530549558|ref|YP_008430111.1| - 4.4e-15 55.9 0.1 6.9e-15 55.3 0.1 1.3 1 0 0 1 1 1 1 PIN domain of ribonuclease PIN_5 PF08745.11 gi|530549558|ref|YP_008430111.1| - 1.3e-05 24.7 0.1 2.1e-05 24.1 0.1 1.3 1 0 0 1 1 1 1 PINc domain ribonuclease HypA PF01155.19 gi|530549558|ref|YP_008430111.1| - 0.00029 20.8 0.0 0.0005 20.1 0.0 1.5 1 1 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn-ribbon_8 PF09723.10 gi|530549558|ref|YP_008430111.1| - 0.0012 18.9 0.1 0.0024 18.0 0.1 1.5 1 0 0 1 1 1 1 Zinc ribbon domain NOB1_Zn_bind PF08772.11 gi|530549558|ref|YP_008430111.1| - 0.0053 16.9 2.1 0.0061 16.7 1.0 1.6 2 0 0 2 2 2 1 Nin one binding (NOB1) Zn-ribbon like Zn_ribbon_SprT PF17283.2 gi|530549558|ref|YP_008430111.1| - 0.006 16.5 3.1 0.2 11.6 0.4 2.2 2 0 0 2 2 2 1 SprT-like zinc ribbon domain DZR PF12773.7 gi|530549558|ref|YP_008430111.1| - 0.022 14.8 0.1 0.034 14.2 0.1 1.3 1 0 0 1 1 1 0 Double zinc ribbon Nudix_N_2 PF14803.6 gi|530549558|ref|YP_008430111.1| - 0.03 14.2 1.1 5.7 6.9 0.2 2.4 2 0 0 2 2 2 0 Nudix N-terminal zinc-ribbons_6 PF07191.12 gi|530549558|ref|YP_008430111.1| - 0.041 13.9 0.1 0.07 13.1 0.1 1.3 1 0 0 1 1 1 0 zinc-ribbons ADK_lid PF05191.14 gi|530549558|ref|YP_008430111.1| - 0.051 13.6 2.0 0.093 12.7 2.0 1.4 1 0 0 1 1 1 0 Adenylate kinase, active site lid Prok-RING_1 PF14446.6 gi|530549558|ref|YP_008430111.1| - 0.064 13.2 0.8 0.1 12.5 0.8 1.3 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 Sigma70_r4 PF04545.16 gi|530549558|ref|YP_008430111.1| - 0.12 11.9 0.3 0.53 9.8 0.0 2.2 2 1 1 3 3 3 0 Sigma-70, region 4 zf-C2H2 PF00096.26 gi|530549558|ref|YP_008430111.1| - 1.1 9.9 2.9 8.3 7.1 0.2 2.6 3 0 0 3 3 3 0 Zinc finger, C2H2 type TF_Zn_Ribbon PF08271.12 gi|530549558|ref|YP_008430111.1| - 3.3 7.3 5.2 1.2e+02 2.3 0.5 2.3 1 1 0 1 1 1 0 TFIIB zinc-binding YhfH PF14149.6 gi|530549558|ref|YP_008430111.1| - 7.3 6.7 7.0 0.38 10.8 0.6 2.2 1 1 1 2 2 2 0 YhfH-like protein Hydrolase_3 PF08282.12 gi|530549559|ref|YP_008430112.1| - 4.8e-05 23.2 0.2 0.013 15.2 0.2 2.2 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|530549559|ref|YP_008430112.1| - 0.0011 19.3 1.1 0.05 13.9 0.1 2.4 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 gi|530549559|ref|YP_008430112.1| - 0.032 14.3 0.1 0.12 12.5 0.1 2.2 1 1 1 2 2 2 0 Haloacid dehalogenase-like hydrolase ATG16 PF08614.11 gi|530549559|ref|YP_008430112.1| - 0.039 14.2 0.0 0.062 13.5 0.0 1.2 1 0 0 1 1 1 0 Autophagy protein 16 (ATG16) DUF3970 PF13113.6 gi|530549559|ref|YP_008430112.1| - 0.054 13.7 0.1 0.1 12.9 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3970) RmuC PF02646.16 gi|530549559|ref|YP_008430112.1| - 0.069 12.3 0.0 0.1 11.7 0.0 1.2 1 0 0 1 1 1 0 RmuC family DivIVA PF05103.13 gi|530549559|ref|YP_008430112.1| - 0.069 13.2 0.6 0.12 12.4 0.6 1.3 1 0 0 1 1 1 0 DivIVA protein NIF PF03031.18 gi|530549559|ref|YP_008430112.1| - 0.084 12.6 0.1 0.43 10.3 0.1 2.0 1 1 0 1 1 1 0 NLI interacting factor-like phosphatase HAD PF12710.7 gi|530549559|ref|YP_008430112.1| - 0.15 12.5 0.1 1.6 9.1 0.0 2.1 1 1 1 2 2 2 0 haloacid dehalogenase-like hydrolase Flavoprotein PF02441.19 gi|530549560|ref|YP_008430113.1| - 6.3e-18 65.0 0.0 1.1e-17 64.2 0.0 1.4 1 1 0 1 1 1 1 Flavoprotein bMG6 PF17962.1 gi|530549561|ref|YP_008430114.1| - 0.06 13.5 0.0 0.12 12.6 0.0 1.5 1 0 0 1 1 1 0 Bacterial macroglobulin domain 6 Band_7_C PF16200.5 gi|530549561|ref|YP_008430114.1| - 0.17 12.0 0.1 0.29 11.2 0.1 1.3 1 0 0 1 1 1 0 C-terminal region of band_7 DUF2393 PF09624.10 gi|530549562|ref|YP_008430115.1| - 0.019 15.0 0.2 0.081 12.9 0.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2393) NikR_C PF08753.11 gi|530549563|ref|YP_008430116.1| - 1.1e-33 115.1 4.9 1.7e-33 114.6 4.9 1.2 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_1 PF01402.21 gi|530549563|ref|YP_008430116.1| - 1e-08 34.8 0.1 2.7e-08 33.5 0.1 1.7 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family HicB_lk_antitox PF15919.5 gi|530549563|ref|YP_008430116.1| - 0.027 14.6 0.1 0.082 13.0 0.0 1.8 2 1 0 2 2 2 0 HicB_like antitoxin of bacterial toxin-antitoxin system C9orf72-like PF15019.6 gi|530549563|ref|YP_008430116.1| - 0.084 12.4 0.0 0.1 12.1 0.0 1.1 1 0 0 1 1 1 0 C9orf72-like protein family Nre_N PF04894.12 gi|530549564|ref|YP_008430117.1| - 7.2e-85 285.1 0.0 9.4e-85 284.7 0.0 1.1 1 0 0 1 1 1 1 Archaeal Nre, N-terminal Nre_C PF04895.12 gi|530549564|ref|YP_008430117.1| - 9.3e-36 122.1 0.0 1.4e-35 121.5 0.0 1.3 1 0 0 1 1 1 1 Archaeal Nre, C-terminal YwiC PF14256.6 gi|530549565|ref|YP_008430118.1| - 0.0046 17.3 1.9 0.0074 16.6 1.4 1.5 1 1 0 1 1 1 1 YwiC-like protein DUF3967 PF13152.6 gi|530549567|ref|YP_008430120.1| - 0.18 11.6 1.7 3 7.7 0.6 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3967) zf-H2C2_5 PF13909.6 gi|530549568|ref|YP_008430121.1| - 5.6e-06 26.0 0.0 7.5e-06 25.6 0.0 1.1 1 0 0 1 1 1 1 C2H2-type zinc-finger domain zf-Di19 PF05605.12 gi|530549568|ref|YP_008430121.1| - 2.1e-05 24.7 0.1 2.5e-05 24.5 0.1 1.1 1 0 0 1 1 1 1 Drought induced 19 protein (Di19), zinc-binding Actin_micro PF17003.5 gi|530549568|ref|YP_008430121.1| - 0.00015 21.1 0.2 0.00015 21.1 0.2 1.0 1 0 0 1 1 1 1 Putative actin-like family zf_C2H2_ZHX PF18387.1 gi|530549568|ref|YP_008430121.1| - 0.00016 21.2 0.0 0.00017 21.1 0.0 1.1 1 0 0 1 1 1 1 Zinc-fingers and homeoboxes C2H2 finger domain zf-C2H2 PF00096.26 gi|530549568|ref|YP_008430121.1| - 0.00036 20.8 0.2 0.00057 20.2 0.2 1.4 1 0 0 1 1 1 1 Zinc finger, C2H2 type zf-C2H2_9 PF16293.5 gi|530549568|ref|YP_008430121.1| - 0.00075 19.3 0.0 0.00088 19.1 0.0 1.1 1 0 0 1 1 1 1 C2H2 type zinc-finger (1 copy) zf-C2H2_4 PF13894.6 gi|530549568|ref|YP_008430121.1| - 0.00087 19.9 0.3 0.0012 19.5 0.3 1.2 1 0 0 1 1 1 1 C2H2-type zinc finger zf-C2H2_2 PF12756.7 gi|530549568|ref|YP_008430121.1| - 0.0015 18.8 0.1 0.0015 18.8 0.1 1.1 1 0 0 1 1 1 1 C2H2 type zinc-finger (2 copies) zf-C2H2_12 PF18658.1 gi|530549568|ref|YP_008430121.1| - 0.0037 16.8 0.0 0.0044 16.6 0.0 1.1 1 0 0 1 1 1 1 Zinc-finger C2H2-type zf-H2C2_2 PF13465.6 gi|530549568|ref|YP_008430121.1| - 0.0052 17.2 2.0 0.074 13.5 0.2 2.1 2 0 0 2 2 2 1 Zinc-finger double domain DUF629 PF04780.12 gi|530549568|ref|YP_008430121.1| - 0.0057 15.2 0.1 0.0059 15.2 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF629) ARS2 PF04959.13 gi|530549568|ref|YP_008430121.1| - 0.012 16.0 0.1 0.012 16.0 0.1 1.0 1 0 0 1 1 1 0 Arsenite-resistance protein 2 zf-C2HE PF16278.5 gi|530549568|ref|YP_008430121.1| - 0.02 15.3 0.8 0.025 15.0 0.8 1.2 1 0 0 1 1 1 0 C2HE / C2H2 / C2HC zinc-binding finger zf_C2H2_10 PF18414.1 gi|530549568|ref|YP_008430121.1| - 0.03 13.9 0.0 0.042 13.4 0.0 1.2 1 0 0 1 1 1 0 C2H2 type zinc-finger Zn_Tnp_IS1595 PF12760.7 gi|530549568|ref|YP_008430121.1| - 0.054 13.5 0.1 0.055 13.4 0.1 1.3 1 1 0 1 1 1 0 Transposase zinc-ribbon domain zf-MYST PF17772.1 gi|530549568|ref|YP_008430121.1| - 0.076 12.6 0.1 0.11 12.2 0.1 1.3 1 0 0 1 1 1 0 MYST family zinc finger domain zf-C2H2_3rep PF18868.1 gi|530549568|ref|YP_008430121.1| - 0.077 13.7 0.2 0.13 12.9 0.2 1.4 1 1 0 1 1 1 0 Zinc finger C2H2-type, 3 repeats TF_Zn_Ribbon PF08271.12 gi|530549568|ref|YP_008430121.1| - 0.081 12.5 0.0 0.11 12.0 0.0 1.3 1 0 0 1 1 1 0 TFIIB zinc-binding zf-BED PF02892.15 gi|530549568|ref|YP_008430121.1| - 0.11 12.6 0.1 0.15 12.1 0.1 1.3 1 0 0 1 1 1 0 BED zinc finger PTPS PF01242.19 gi|530549569|ref|YP_008430122.1| - 1.5e-27 96.0 0.1 2e-27 95.6 0.1 1.2 1 0 0 1 1 1 1 6-pyruvoyl tetrahydropterin synthase DUF4988 PF16378.5 gi|530549569|ref|YP_008430122.1| - 0.042 13.5 0.1 0.054 13.2 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function DUF296 PF03479.15 gi|530549570|ref|YP_008430123.1| - 7.8e-22 77.7 0.0 8.8e-22 77.5 0.0 1.0 1 0 0 1 1 1 1 Plants and Prokaryotes Conserved (PCC) domain Peptidase_C26 PF07722.13 gi|530549572|ref|YP_008430125.1| - 8.9e-54 182.5 0.0 1.1e-53 182.2 0.0 1.1 1 0 0 1 1 1 1 Peptidase C26 GATase PF00117.28 gi|530549572|ref|YP_008430125.1| - 1.1e-06 28.6 0.0 3.4e-06 27.0 0.0 1.9 1 1 0 1 1 1 1 Glutamine amidotransferase class-I Radical_SAM PF04055.21 gi|530549573|ref|YP_008430126.1| - 3.3e-14 53.6 0.1 6.5e-14 52.6 0.1 1.5 2 0 0 2 2 2 1 Radical SAM superfamily DUF1848 PF08902.11 gi|530549573|ref|YP_008430126.1| - 0.00094 19.0 7.0 0.82 9.3 5.6 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF1848) Fer4_12 PF13353.6 gi|530549573|ref|YP_008430126.1| - 0.074 13.3 0.1 0.21 11.9 0.1 1.9 2 1 0 2 2 2 0 4Fe-4S single cluster domain SpoU_sub_bind PF08032.12 gi|530549573|ref|YP_008430126.1| - 0.15 12.4 0.3 1 9.7 0.0 2.4 2 0 0 2 2 2 0 RNA 2'-O ribose methyltransferase substrate binding OsmC PF02566.19 gi|530549574|ref|YP_008430127.1| - 2.9e-17 63.0 0.0 3.6e-17 62.7 0.0 1.1 1 0 0 1 1 1 1 OsmC-like protein DUF1884 PF08967.10 gi|530549575|ref|YP_008430128.1| - 4.6e-36 122.9 2.0 5.1e-36 122.8 2.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1884) CitG PF01874.16 gi|530549576|ref|YP_008430129.1| - 1.1e-46 159.8 0.0 1.2e-46 159.6 0.0 1.0 1 0 0 1 1 1 1 ATP:dephospho-CoA triphosphoribosyl transferase DUF2154 PF09922.9 gi|530549577|ref|YP_008430130.1| - 0.01 15.7 1.6 18 5.2 0.1 3.6 2 1 2 4 4 4 0 Cell wall-active antibiotics response 4TMS YvqF DUF4097 PF13349.6 gi|530549577|ref|YP_008430130.1| - 0.13 11.5 1.4 0.32 10.3 1.4 1.7 1 1 0 1 1 1 0 Putative adhesin DUF4418 PF14387.6 gi|530549577|ref|YP_008430130.1| - 0.2 11.9 0.9 0.47 10.7 0.9 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4418) DUF308 PF03729.13 gi|530549577|ref|YP_008430130.1| - 1.7 9.0 7.9 0.16 12.3 1.5 2.1 2 0 0 2 2 2 0 Short repeat of unknown function (DUF308) PspC PF04024.12 gi|530549578|ref|YP_008430131.1| - 4e-20 71.4 0.4 4e-20 71.4 0.4 2.2 2 1 0 2 2 2 1 PspC domain DUF443 PF04276.12 gi|530549578|ref|YP_008430131.1| - 0.067 13.0 0.8 0.34 10.7 0.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF443) DUF4574 PF15141.6 gi|530549578|ref|YP_008430131.1| - 0.11 12.4 0.5 0.3 11.0 0.4 1.9 1 1 0 1 1 1 0 Ubiquinol-cytochrome-c reductase complex assembly factor 3 UPF0239 PF06783.11 gi|530549578|ref|YP_008430131.1| - 0.18 12.0 0.1 0.18 12.0 0.1 1.7 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0239) DUF373 PF04123.13 gi|530549578|ref|YP_008430131.1| - 0.42 10.0 3.8 0.4 10.1 2.1 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF373) DUF1676 PF07898.13 gi|530549578|ref|YP_008430131.1| - 0.72 9.9 5.9 0.15 12.0 2.7 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1676) DUF2207 PF09972.9 gi|530549578|ref|YP_008430131.1| - 0.83 8.3 3.5 2.1 7.0 3.5 1.7 1 1 0 1 1 1 0 Predicted membrane protein (DUF2207) PspC PF04024.12 gi|530549579|ref|YP_008430132.1| - 1.2e-24 85.8 1.4 1.4e-24 85.6 1.4 1.0 1 0 0 1 1 1 1 PspC domain Potass_KdpF PF09604.10 gi|530549579|ref|YP_008430132.1| - 0.11 12.5 4.8 0.18 11.8 4.8 1.4 1 0 0 1 1 1 0 F subunit of K+-transporting ATPase (Potass_KdpF) His_Phos_1 PF00300.22 gi|530549580|ref|YP_008430133.1| - 8.5e-39 133.3 0.0 7e-20 71.5 0.0 2.0 1 1 1 2 2 2 2 Histidine phosphatase superfamily (branch 1) Prok-JAB PF14464.6 gi|530549582|ref|YP_008430135.1| - 1.2e-15 57.3 0.0 1.4e-15 57.1 0.0 1.0 1 0 0 1 1 1 1 Prokaryotic homologs of the JAB domain JAB PF01398.21 gi|530549582|ref|YP_008430135.1| - 0.00094 19.1 0.0 0.0022 17.9 0.0 1.6 1 1 0 1 1 1 1 JAB1/Mov34/MPN/PAD-1 ubiquitin protease MobB PF03205.14 gi|530549583|ref|YP_008430136.1| - 3.7e-19 68.9 1.3 4.5e-19 68.7 0.3 1.6 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B FeS PF04060.13 gi|530549583|ref|YP_008430136.1| - 9.8e-09 34.7 0.8 1.7e-08 33.9 0.8 1.4 1 0 0 1 1 1 1 Putative Fe-S cluster SRP54 PF00448.22 gi|530549583|ref|YP_008430136.1| - 0.00065 19.4 0.5 0.0014 18.3 0.3 1.6 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain KTI12 PF08433.10 gi|530549583|ref|YP_008430136.1| - 0.006 16.1 0.1 0.013 14.9 0.0 1.6 2 0 0 2 2 2 1 Chromatin associated protein KTI12 MeaB PF03308.16 gi|530549583|ref|YP_008430136.1| - 0.0074 15.3 0.2 0.012 14.6 0.2 1.3 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_26 PF13500.6 gi|530549583|ref|YP_008430136.1| - 0.0088 15.9 0.0 0.016 15.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_14 PF13173.6 gi|530549583|ref|YP_008430136.1| - 0.012 15.7 0.0 0.02 14.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 gi|530549583|ref|YP_008430136.1| - 0.013 15.5 0.2 0.037 13.9 0.1 1.8 2 0 0 2 2 2 0 NTPase AAA PF00004.29 gi|530549583|ref|YP_008430136.1| - 0.043 14.2 0.1 0.2 12.1 0.0 2.0 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.6 gi|530549583|ref|YP_008430136.1| - 0.054 13.7 0.0 0.12 12.5 0.0 1.5 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.6 gi|530549583|ref|YP_008430136.1| - 0.11 12.9 0.1 0.15 12.4 0.1 1.4 1 1 0 1 1 1 0 AAA ATPase domain DUF150_C PF17384.2 gi|530549584|ref|YP_008430137.1| - 0.0006 19.9 0.1 0.00083 19.4 0.1 1.2 1 0 0 1 1 1 1 RimP C-terminal SH3 domain LSM PF01423.22 gi|530549584|ref|YP_008430137.1| - 0.034 13.8 0.1 0.041 13.6 0.1 1.3 1 0 0 1 1 1 0 LSM domain DUF515 PF04415.12 gi|530549585|ref|YP_008430138.1| - 0.046 12.1 1.9 0.063 11.7 1.9 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF515) SelB-wing_2 PF09106.11 gi|530549585|ref|YP_008430138.1| - 0.067 13.4 0.1 0.57 10.4 0.0 2.7 3 0 0 3 3 3 0 Elongation factor SelB, winged helix DUF5362 PF17319.2 gi|530549586|ref|YP_008430139.1| - 0.00017 21.4 7.7 0.00027 20.7 7.7 1.4 1 1 0 1 1 1 1 Family of unknown function (DUF5362) MotA_ExbB PF01618.16 gi|530549586|ref|YP_008430139.1| - 0.041 13.6 0.2 0.065 13.0 0.2 1.4 1 0 0 1 1 1 0 MotA/TolQ/ExbB proton channel family DUF2371 PF10177.9 gi|530549586|ref|YP_008430139.1| - 0.1 12.8 1.8 0.2 11.8 1.7 1.6 1 1 0 1 1 1 0 Uncharacterised conserved protein (DUF2371) DUF4234 PF14018.6 gi|530549586|ref|YP_008430139.1| - 0.17 12.0 2.2 0.72 10.0 1.8 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4234) AIRS_C PF02769.22 gi|530549587|ref|YP_008430140.1| - 9.7e-31 107.0 1.9 1.8e-30 106.1 1.9 1.4 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|530549587|ref|YP_008430140.1| - 5.2e-17 62.3 0.1 1.1e-16 61.3 0.1 1.5 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain Aminotran_1_2 PF00155.21 gi|530549588|ref|YP_008430141.1| - 3.1e-75 253.6 0.0 3.5e-75 253.5 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|530549588|ref|YP_008430141.1| - 2.5e-08 33.7 0.0 3.4e-08 33.2 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 gi|530549588|ref|YP_008430141.1| - 1.4e-05 24.3 0.0 5.4e-05 22.3 0.0 1.8 2 0 0 2 2 2 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|530549588|ref|YP_008430141.1| - 0.0052 15.4 0.1 0.0091 14.6 0.1 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.21 gi|530549588|ref|YP_008430141.1| - 0.011 15.0 0.0 0.018 14.3 0.0 1.3 1 0 0 1 1 1 0 Beta-eliminating lyase Carbam_trans_C PF16861.5 gi|530549589|ref|YP_008430142.1| - 1.5e-64 216.6 0.0 2.2e-64 216.2 0.0 1.2 1 0 0 1 1 1 1 Carbamoyltransferase C-terminus Carbam_trans_N PF02543.15 gi|530549589|ref|YP_008430142.1| - 1.1e-50 173.2 1.0 1.6e-41 143.1 0.3 2.2 1 1 1 2 2 2 2 Carbamoyltransferase N-terminus Peptidase_M22 PF00814.25 gi|530549589|ref|YP_008430142.1| - 7.8e-07 29.1 0.0 2.1e-06 27.7 0.0 1.7 1 0 0 1 1 1 1 Glycoprotease family Cupin_2 PF07883.11 gi|530549590|ref|YP_008430143.1| - 1.2e-18 66.5 0.0 1.6e-18 66.2 0.0 1.1 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.19 gi|530549590|ref|YP_008430143.1| - 2.4e-12 46.9 0.0 3.1e-12 46.6 0.0 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_1 PF00190.22 gi|530549590|ref|YP_008430143.1| - 7.6e-06 25.6 0.0 1.3e-05 24.8 0.0 1.4 1 1 0 1 1 1 1 Cupin MannoseP_isomer PF01050.18 gi|530549590|ref|YP_008430143.1| - 2.3e-05 24.4 0.0 2.4e-05 24.3 0.0 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase CENP-C_C PF11699.8 gi|530549590|ref|YP_008430143.1| - 0.00031 20.9 0.0 0.00039 20.6 0.0 1.1 1 0 0 1 1 1 1 Mif2/CENP-C like Cupin_3 PF05899.12 gi|530549590|ref|YP_008430143.1| - 0.00098 18.8 0.1 0.0017 18.0 0.1 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF861) Ectoine_synth PF06339.12 gi|530549590|ref|YP_008430143.1| - 0.0098 16.1 0.0 0.012 15.8 0.0 1.1 1 0 0 1 1 1 1 Ectoine synthase Asp_Arg_Hydrox PF05118.15 gi|530549590|ref|YP_008430143.1| - 0.01 15.7 0.0 0.013 15.4 0.0 1.2 1 0 0 1 1 1 0 Aspartyl/Asparaginyl beta-hydroxylase Cupin_7 PF12973.7 gi|530549590|ref|YP_008430143.1| - 0.071 13.0 0.0 0.088 12.7 0.0 1.3 1 0 0 1 1 1 0 ChrR Cupin-like domain Auxin_BP PF02041.16 gi|530549590|ref|YP_008430143.1| - 0.095 12.4 0.0 0.12 12.0 0.0 1.1 1 0 0 1 1 1 0 Auxin binding protein AraC_binding_2 PF14525.6 gi|530549590|ref|YP_008430143.1| - 0.26 10.9 0.0 0.26 10.9 0.0 1.1 1 0 0 1 1 1 0 AraC-binding-like domain Mem_trans PF03547.18 gi|530549592|ref|YP_008430145.1| - 2.3e-14 52.6 18.7 4.7e-08 31.8 4.9 2.1 1 1 1 2 2 2 2 Membrane transport protein SSF PF00474.17 gi|530549594|ref|YP_008430147.1| - 3.5e-48 164.5 25.5 5.1e-48 163.9 25.5 1.2 1 0 0 1 1 1 1 Sodium:solute symporter family RmuC PF02646.16 gi|530549597|ref|YP_008430150.1| - 0.003 16.7 0.0 0.0045 16.2 0.0 1.2 1 0 0 1 1 1 1 RmuC family NUFIP1 PF10453.9 gi|530549597|ref|YP_008430150.1| - 0.027 14.3 0.3 11 6.0 0.2 2.5 2 0 0 2 2 2 0 Nuclear fragile X mental retardation-interacting protein 1 (NUFIP1) DUF2862 PF11061.8 gi|530549598|ref|YP_008430151.1| - 0.03 14.2 0.3 0.064 13.1 0.2 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2862) SesA PF17107.5 gi|530549599|ref|YP_008430152.1| - 0.14 12.4 0.3 9.3 6.5 0.0 2.6 3 0 0 3 3 3 0 N-terminal domain on NACHT_NTPase and P-loop NTPases DUF257 PF03192.13 gi|530549602|ref|YP_008430155.1| - 7.5e-51 172.9 0.3 8.9e-51 172.6 0.3 1.1 1 0 0 1 1 1 1 Pyrococcus protein of unknown function, DUF257 Enolase_C PF00113.22 gi|530549604|ref|YP_008430157.1| - 1.7e-129 431.3 0.4 2.2e-129 430.9 0.4 1.1 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.16 gi|530549604|ref|YP_008430157.1| - 3.3e-60 202.0 0.0 5.5e-60 201.3 0.0 1.4 1 0 0 1 1 1 1 Enolase, N-terminal domain MR_MLE_C PF13378.6 gi|530549604|ref|YP_008430157.1| - 2.3e-07 30.6 0.0 3.3e-07 30.1 0.0 1.3 1 0 0 1 1 1 1 Enolase C-terminal domain-like MAAL_C PF07476.11 gi|530549604|ref|YP_008430157.1| - 3.1e-05 23.3 0.1 0.00011 21.5 0.0 1.8 2 0 0 2 2 2 1 Methylaspartate ammonia-lyase C-terminus DpnD-PcfM PF14207.6 gi|530549604|ref|YP_008430157.1| - 0.035 14.0 0.0 0.085 12.7 0.0 1.7 1 0 0 1 1 1 0 DpnD/PcfM-like protein Radical_SAM PF04055.21 gi|530549606|ref|YP_008430159.1| - 2e-19 70.6 0.0 4.4e-19 69.5 0.0 1.6 1 0 0 1 1 1 1 Radical SAM superfamily SPASM PF13186.6 gi|530549606|ref|YP_008430159.1| - 1.3e-08 35.2 0.1 4.1e-08 33.6 0.1 1.9 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.6 gi|530549606|ref|YP_008430159.1| - 1.5e-08 35.0 0.1 4.2e-08 33.5 0.0 1.8 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|530549606|ref|YP_008430159.1| - 1.6e-08 34.7 0.0 7e-08 32.6 0.0 2.0 2 0 0 2 2 2 1 4Fe-4S single cluster domain TrmB PF01978.19 gi|530549606|ref|YP_008430159.1| - 0.091 12.7 0.3 0.51 10.3 0.1 2.3 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB ABC_tran PF00005.27 gi|530549607|ref|YP_008430160.1| - 1.1e-25 90.7 0.0 1.7e-25 90.1 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|530549607|ref|YP_008430160.1| - 1.5e-09 38.1 5.8 0.00013 21.9 0.3 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|530549607|ref|YP_008430160.1| - 0.0018 18.0 0.2 0.0038 17.0 0.2 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.6 gi|530549607|ref|YP_008430160.1| - 0.0039 17.7 5.4 0.0076 16.8 5.4 1.7 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|530549607|ref|YP_008430160.1| - 0.0056 17.1 0.2 0.028 14.8 0.2 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.15 gi|530549607|ref|YP_008430160.1| - 0.029 14.3 0.0 0.044 13.7 0.0 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_30 PF13604.6 gi|530549607|ref|YP_008430160.1| - 0.094 12.4 0.0 0.18 11.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain SMC_N PF02463.19 gi|530549607|ref|YP_008430160.1| - 0.12 11.8 0.6 1.6 8.1 0.1 2.3 2 1 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|530549607|ref|YP_008430160.1| - 0.13 12.0 0.0 0.23 11.2 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain SRP54 PF00448.22 gi|530549607|ref|YP_008430160.1| - 0.13 11.8 0.1 0.45 10.1 0.1 1.8 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_19 PF13245.6 gi|530549607|ref|YP_008430160.1| - 0.15 12.4 0.2 0.34 11.2 0.0 1.6 2 0 0 2 2 2 0 AAA domain SbcCD_C PF13558.6 gi|530549607|ref|YP_008430160.1| - 0.18 12.1 0.0 0.3 11.3 0.0 1.4 1 0 0 1 1 1 0 Putative exonuclease SbcCD, C subunit NTPase_1 PF03266.15 gi|530549607|ref|YP_008430160.1| - 0.22 11.4 0.9 0.68 9.8 0.2 2.0 2 1 0 2 2 2 0 NTPase ABC2_membrane PF01061.24 gi|530549608|ref|YP_008430161.1| - 3e-21 75.8 21.4 3e-21 75.8 21.4 1.9 1 1 1 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|530549608|ref|YP_008430161.1| - 2.3e-10 40.1 27.8 2.3e-10 40.1 27.8 1.9 1 1 1 2 2 2 1 ABC-2 family transporter protein ISK_Channel PF02060.15 gi|530549608|ref|YP_008430161.1| - 0.026 14.2 0.2 0.059 13.1 0.2 1.6 1 0 0 1 1 1 0 Slow voltage-gated potassium channel Fibrillarin PF01269.17 gi|530549609|ref|YP_008430162.1| - 2.5e-102 340.8 0.0 2.9e-102 340.6 0.0 1.0 1 0 0 1 1 1 1 Fibrillarin PCMT PF01135.19 gi|530549609|ref|YP_008430162.1| - 5.8e-05 22.9 0.0 7.3e-05 22.6 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) GCD14 PF08704.10 gi|530549609|ref|YP_008430162.1| - 0.0017 18.1 0.0 0.0031 17.2 0.0 1.4 1 1 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit FtsJ PF01728.19 gi|530549609|ref|YP_008430162.1| - 0.019 15.1 0.0 0.028 14.5 0.0 1.4 1 1 0 1 1 1 0 FtsJ-like methyltransferase TehB PF03848.14 gi|530549609|ref|YP_008430162.1| - 0.11 11.9 0.0 0.14 11.5 0.0 1.3 1 0 0 1 1 1 0 Tellurite resistance protein TehB Nop PF01798.18 gi|530549610|ref|YP_008430163.1| - 2e-74 249.9 0.1 2.9e-74 249.4 0.1 1.2 1 0 0 1 1 1 1 snoRNA binding domain, fibrillarin Coilin_N PF15862.5 gi|530549610|ref|YP_008430163.1| - 0.009 15.8 9.4 0.59 9.9 8.2 2.2 2 0 0 2 2 2 2 Coilin N-terminus Snf7 PF03357.21 gi|530549610|ref|YP_008430163.1| - 0.028 14.0 1.4 0.028 14.0 1.4 2.9 3 1 0 3 3 3 0 Snf7 RuvB_N PF05496.12 gi|530549610|ref|YP_008430163.1| - 0.14 11.9 0.1 1 9.1 0.0 2.1 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain OmpH PF03938.14 gi|530549610|ref|YP_008430163.1| - 3.1 8.1 13.2 6.6 7.1 0.1 2.6 2 0 0 2 2 2 0 Outer membrane protein (OmpH-like) ACP_syn_III_C PF08541.10 gi|530549611|ref|YP_008430164.1| - 9.3e-12 45.0 0.1 7.2e-11 42.1 0.0 2.5 3 0 0 3 3 3 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ACP_syn_III PF08545.10 gi|530549611|ref|YP_008430164.1| - 6.8e-05 22.6 2.3 0.00029 20.6 0.5 2.3 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III HMG_CoA_synt_N PF01154.17 gi|530549611|ref|YP_008430164.1| - 0.00011 22.1 0.0 0.0002 21.3 0.0 1.4 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A synthase N terminal HMG_CoA_synt_C PF08540.10 gi|530549611|ref|YP_008430164.1| - 0.00056 19.6 0.1 0.023 14.3 0.0 2.2 1 1 1 2 2 2 1 Hydroxymethylglutaryl-coenzyme A synthase C terminal Thiolase_N PF00108.23 gi|530549611|ref|YP_008430164.1| - 0.0016 17.8 0.0 0.0023 17.3 0.0 1.1 1 0 0 1 1 1 1 Thiolase, N-terminal domain ketoacyl-synt PF00109.26 gi|530549611|ref|YP_008430164.1| - 0.13 11.9 1.5 16 5.0 0.6 2.5 1 1 0 2 2 2 0 Beta-ketoacyl synthase, N-terminal domain Thiolase_N PF00108.23 gi|530549612|ref|YP_008430165.1| - 8.1e-27 94.2 0.0 1.4e-26 93.4 0.0 1.4 1 0 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|530549612|ref|YP_008430165.1| - 1.2e-10 41.1 0.4 1.2e-10 41.1 0.4 2.8 3 1 0 3 3 3 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 gi|530549612|ref|YP_008430165.1| - 2.9e-05 23.8 8.1 8e-05 22.3 2.3 3.1 3 1 1 4 4 4 1 Beta-ketoacyl synthase, N-terminal domain ACP_syn_III PF08545.10 gi|530549612|ref|YP_008430165.1| - 0.0092 15.8 1.3 3.9 7.4 0.0 2.4 2 0 0 2 2 2 2 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Ketoacyl-synt_C PF02801.22 gi|530549612|ref|YP_008430165.1| - 0.012 15.6 1.9 0.97 9.5 0.0 3.4 3 1 0 3 3 3 0 Beta-ketoacyl synthase, C-terminal domain OB_aCoA_assoc PF01796.17 gi|530549613|ref|YP_008430166.1| - 6.3e-22 77.3 0.2 8.5e-22 76.9 0.2 1.2 1 0 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated DUF35_N PF12172.8 gi|530549613|ref|YP_008430166.1| - 3.8e-14 52.2 1.6 5.2e-14 51.8 1.6 1.2 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) TackOD1 PF18551.1 gi|530549613|ref|YP_008430166.1| - 0.00037 20.2 0.5 0.00051 19.8 0.5 1.2 1 0 0 1 1 1 1 Thaumarchaeal output domain 1 zinc-ribbons_6 PF07191.12 gi|530549613|ref|YP_008430166.1| - 0.008 16.1 0.2 0.011 15.7 0.2 1.2 1 0 0 1 1 1 1 zinc-ribbons DZR PF12773.7 gi|530549613|ref|YP_008430166.1| - 0.013 15.5 0.6 0.019 15.0 0.6 1.2 1 0 0 1 1 1 0 Double zinc ribbon HypA PF01155.19 gi|530549613|ref|YP_008430166.1| - 0.022 14.8 1.2 0.057 13.4 0.4 1.8 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Nudix_N_2 PF14803.6 gi|530549613|ref|YP_008430166.1| - 0.035 14.0 2.6 2.7 8.0 0.2 2.4 2 0 0 2 2 2 0 Nudix N-terminal Zn_Tnp_IS1595 PF12760.7 gi|530549613|ref|YP_008430166.1| - 0.039 13.9 0.4 0.039 13.9 0.4 2.2 1 1 1 2 2 2 0 Transposase zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|530549613|ref|YP_008430166.1| - 0.058 12.9 3.8 0.47 10.0 0.1 2.8 3 0 0 3 3 3 0 TFIIB zinc-binding Ribosomal_L32p PF01783.23 gi|530549613|ref|YP_008430166.1| - 0.058 13.7 1.3 0.092 13.0 1.3 1.3 1 0 0 1 1 1 0 Ribosomal L32p protein family zf-RRN7 PF11781.8 gi|530549613|ref|YP_008430166.1| - 0.084 12.6 0.2 0.084 12.6 0.2 2.4 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 SoxD PF04267.12 gi|530549613|ref|YP_008430166.1| - 0.094 12.8 0.1 0.25 11.5 0.1 1.7 1 0 0 1 1 1 0 Sarcosine oxidase, delta subunit family Zn-ribbon_8 PF09723.10 gi|530549613|ref|YP_008430166.1| - 0.095 12.8 6.2 0.35 11.0 6.2 2.0 1 1 0 1 1 1 0 Zinc ribbon domain zinc_ribbon_13 PF09855.9 gi|530549613|ref|YP_008430166.1| - 0.2 11.8 0.5 8.9 6.6 0.0 2.3 2 0 0 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) zf-ribbon_3 PF13248.6 gi|530549613|ref|YP_008430166.1| - 0.58 9.6 6.2 2.5 7.6 6.3 1.8 1 1 1 2 2 2 0 zinc-ribbon domain zf-NADH-PPase PF09297.11 gi|530549613|ref|YP_008430166.1| - 0.86 9.3 5.4 3.7 7.3 0.5 2.6 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zinc_ribbon_2 PF13240.6 gi|530549613|ref|YP_008430166.1| - 1.1 9.1 6.6 2.4 8.0 6.6 1.6 1 1 0 1 1 1 0 zinc-ribbon domain zf-ACC PF17848.1 gi|530549613|ref|YP_008430166.1| - 5.7 7.1 6.1 19 5.5 0.3 2.4 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain Rubredoxin_2 PF18073.1 gi|530549613|ref|YP_008430166.1| - 7.4 6.4 7.8 16 5.3 1.1 2.2 1 1 1 2 2 2 0 Rubredoxin metal binding domain Acetyltransf_1 PF00583.25 gi|530549614|ref|YP_008430167.1| - 3e-22 79.0 0.4 3.7e-22 78.8 0.4 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|530549614|ref|YP_008430167.1| - 4.4e-16 59.0 0.0 6.2e-16 58.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|530549614|ref|YP_008430167.1| - 2.3e-15 56.8 0.2 3.5e-15 56.2 0.2 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|530549614|ref|YP_008430167.1| - 9.1e-08 32.0 0.0 1.4e-07 31.4 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_4 PF13420.7 gi|530549614|ref|YP_008430167.1| - 2.6e-07 30.9 0.1 3e-07 30.7 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|530549614|ref|YP_008430167.1| - 3.4e-05 23.9 0.1 4.1e-05 23.7 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|530549614|ref|YP_008430167.1| - 0.00024 21.2 0.0 0.00045 20.3 0.0 1.5 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_3 PF13302.7 gi|530549614|ref|YP_008430167.1| - 0.00057 20.6 0.2 0.00067 20.3 0.2 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_15 PF17013.5 gi|530549614|ref|YP_008430167.1| - 0.002 17.6 0.0 0.0023 17.4 0.0 1.3 1 0 0 1 1 1 1 Putative acetyl-transferase Acetyltransf_8 PF13523.6 gi|530549614|ref|YP_008430167.1| - 0.011 15.5 0.0 0.014 15.1 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain HTH_3 PF01381.22 gi|530549615|ref|YP_008430168.1| - 4.1e-10 39.6 0.2 7.1e-10 38.8 0.2 1.3 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 gi|530549615|ref|YP_008430168.1| - 1.6e-05 24.8 0.7 3.3e-05 23.8 0.7 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|530549615|ref|YP_008430168.1| - 0.00015 22.0 0.0 0.00036 20.8 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain DUF4428 PF14471.6 gi|530549615|ref|YP_008430168.1| - 0.0017 18.3 0.1 0.003 17.4 0.1 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4428) HTH_26 PF13443.6 gi|530549615|ref|YP_008430168.1| - 0.054 13.9 0.0 0.084 13.3 0.0 1.3 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain ArsR PF09824.9 gi|530549615|ref|YP_008430168.1| - 0.057 13.0 0.0 0.11 12.1 0.0 1.4 1 0 0 1 1 1 0 ArsR transcriptional regulator HTH_24 PF13412.6 gi|530549615|ref|YP_008430168.1| - 0.075 12.6 0.0 0.14 11.8 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding zf-UDP PF14569.6 gi|530549615|ref|YP_008430168.1| - 0.16 12.1 0.7 0.32 11.1 0.7 1.5 1 1 0 1 1 1 0 Zinc-binding RING-finger DUF356 PF04009.12 gi|530549616|ref|YP_008430169.1| - 1.1e-35 122.0 0.0 1.3e-35 121.8 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF356) ABC_tran PF00005.27 gi|530549617|ref|YP_008430170.1| - 7.8e-29 100.9 0.0 1.5e-28 100.0 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|530549617|ref|YP_008430170.1| - 6.9e-10 39.2 0.3 1.4e-05 25.0 0.0 2.3 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|530549617|ref|YP_008430170.1| - 0.0029 17.4 0.8 1.2 8.8 0.0 2.6 2 1 1 3 3 3 2 AAA ATPase domain SMC_N PF02463.19 gi|530549617|ref|YP_008430170.1| - 0.009 15.5 0.2 0.22 10.9 0.2 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|530549617|ref|YP_008430170.1| - 0.022 15.3 5.7 0.066 13.7 5.7 2.2 1 1 0 1 1 1 0 AAA domain SRP54 PF00448.22 gi|530549617|ref|YP_008430170.1| - 0.024 14.3 0.2 0.15 11.7 0.1 2.0 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA PF00004.29 gi|530549617|ref|YP_008430170.1| - 0.034 14.6 0.1 0.066 13.6 0.1 1.6 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|530549617|ref|YP_008430170.1| - 0.049 13.9 0.1 0.17 12.1 0.1 1.9 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|530549617|ref|YP_008430170.1| - 0.062 13.0 0.2 0.14 11.9 0.2 1.7 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|530549617|ref|YP_008430170.1| - 0.089 12.5 0.0 0.17 11.7 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain RNA_helicase PF00910.22 gi|530549617|ref|YP_008430170.1| - 0.15 12.4 0.0 0.4 11.1 0.0 1.7 2 0 0 2 2 1 0 RNA helicase AAA_28 PF13521.6 gi|530549617|ref|YP_008430170.1| - 0.2 11.9 0.2 0.56 10.4 0.2 1.7 1 1 0 1 1 1 0 AAA domain ABC2_membrane_2 PF12679.7 gi|530549618|ref|YP_008430171.1| - 6.1e-16 58.5 20.0 1.2e-15 57.6 20.0 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|530549618|ref|YP_008430171.1| - 4.5e-08 33.3 13.7 4.5e-08 33.3 13.7 1.9 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|530549618|ref|YP_008430171.1| - 0.0033 17.0 20.7 0.078 12.5 16.7 3.4 2 1 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|530549618|ref|YP_008430171.1| - 1.1 8.3 28.5 2.7 7.0 28.5 1.7 1 1 0 1 1 1 0 ABC-2 family transporter protein MM_CoA_mutase PF01642.22 gi|530549620|ref|YP_008430173.1| - 1.4e-243 809.1 0.3 1.6e-243 808.9 0.3 1.0 1 0 0 1 1 1 1 Methylmalonyl-CoA mutase GPI PF06560.11 gi|530549621|ref|YP_008430174.1| - 4.3e-43 146.7 0.2 5e-43 146.5 0.2 1.0 1 0 0 1 1 1 1 Glucose-6-phosphate isomerase (GPI) Cupin_2 PF07883.11 gi|530549621|ref|YP_008430174.1| - 9.2e-08 31.7 0.0 2.3e-07 30.4 0.0 1.7 1 0 0 1 1 1 1 Cupin domain Cupin_1 PF00190.22 gi|530549621|ref|YP_008430174.1| - 1.2e-05 25.0 0.0 1.5e-05 24.7 0.0 1.2 1 0 0 1 1 1 1 Cupin Cupin_3 PF05899.12 gi|530549621|ref|YP_008430174.1| - 0.0012 18.5 0.1 0.004 16.8 0.0 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF861) JmjC PF02373.22 gi|530549621|ref|YP_008430174.1| - 0.062 13.7 0.0 0.17 12.3 0.0 1.7 2 0 0 2 2 2 0 JmjC domain, hydroxylase Cupin_8 PF13621.6 gi|530549621|ref|YP_008430174.1| - 0.14 11.8 0.0 0.26 11.0 0.0 1.3 1 1 0 1 1 1 0 Cupin-like domain DMSP_lyase PF16867.5 gi|530549621|ref|YP_008430174.1| - 0.17 11.5 0.0 0.25 11.0 0.0 1.2 1 0 0 1 1 1 0 Dimethlysulfonioproprionate lyase Peptidase_M50 PF02163.22 gi|530549622|ref|YP_008430175.1| - 5.3e-09 35.7 9.0 3.9e-07 29.6 0.4 3.2 2 1 1 3 3 3 3 Peptidase family M50 KH_2 PF07650.17 gi|530549623|ref|YP_008430176.1| - 1.9e-06 27.6 1.3 2e-06 27.6 1.3 1.0 1 0 0 1 1 1 1 KH domain KH_7 PF17214.3 gi|530549623|ref|YP_008430176.1| - 0.0011 18.9 0.6 0.0013 18.6 0.6 1.3 1 1 0 1 1 1 1 KH domain KH_5 PF13184.6 gi|530549623|ref|YP_008430176.1| - 0.04 14.0 0.9 0.061 13.4 0.9 1.3 1 0 0 1 1 1 0 NusA-like KH domain DUF2108 PF09881.9 gi|530549624|ref|YP_008430177.1| - 0.0018 18.2 0.1 0.0033 17.4 0.0 1.5 2 0 0 2 2 2 1 Predicted membrane protein (DUF2108) V-ATPase_C PF03223.15 gi|530549625|ref|YP_008430178.1| - 0.016 14.6 3.5 0.017 14.5 3.5 1.0 1 0 0 1 1 1 0 V-ATPase subunit C Cupin_2 PF07883.11 gi|530549626|ref|YP_008430179.1| - 1.1e-09 37.9 0.0 1.4e-09 37.6 0.0 1.2 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.19 gi|530549626|ref|YP_008430179.1| - 2.6e-05 24.1 0.0 3.1e-05 23.9 0.0 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_3 PF05899.12 gi|530549626|ref|YP_008430179.1| - 4e-05 23.2 0.0 5.4e-05 22.8 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF861) DMSP_lyase PF16867.5 gi|530549626|ref|YP_008430179.1| - 9.8e-05 22.1 0.0 0.00013 21.6 0.0 1.1 1 0 0 1 1 1 1 Dimethlysulfonioproprionate lyase Cupin_1 PF00190.22 gi|530549626|ref|YP_008430179.1| - 0.054 13.1 0.0 0.076 12.6 0.0 1.3 1 0 0 1 1 1 0 Cupin Hydant_A_N PF05378.13 gi|530549627|ref|YP_008430180.1| - 2.7e-48 164.0 0.0 4.2e-48 163.4 0.0 1.3 1 0 0 1 1 1 1 Hydantoinase/oxoprolinase N-terminal region Hydantoinase_A PF01968.18 gi|530549627|ref|YP_008430180.1| - 3.1e-48 164.5 0.1 9.3e-48 163.0 0.0 1.8 2 0 0 2 2 2 1 Hydantoinase/oxoprolinase MutL PF13941.6 gi|530549627|ref|YP_008430180.1| - 0.065 11.8 0.2 5.4 5.5 0.0 2.2 2 0 0 2 2 2 0 MutL protein BcrAD_BadFG PF01869.20 gi|530549627|ref|YP_008430180.1| - 0.084 12.4 0.0 7.8 5.9 0.0 2.2 2 0 0 2 2 2 0 BadF/BadG/BcrA/BcrD ATPase family DeoRC PF00455.22 gi|530549627|ref|YP_008430180.1| - 0.11 12.5 0.1 0.88 9.5 0.1 2.1 2 0 0 2 2 2 0 DeoR C terminal sensor domain Hydantoinase_A PF01968.18 gi|530549628|ref|YP_008430181.1| - 3.6e-29 101.9 0.0 4.5e-29 101.6 0.0 1.1 1 0 0 1 1 1 1 Hydantoinase/oxoprolinase Hydantoinase_B PF02538.14 gi|530549629|ref|YP_008430182.1| - 1.4e-160 535.2 0.0 1.6e-160 534.9 0.0 1.0 1 0 0 1 1 1 1 Hydantoinase B/oxoprolinase Peptidase_M24 PF00557.24 gi|530549630|ref|YP_008430183.1| - 2.6e-71 239.6 0.1 3.3e-71 239.3 0.1 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.18 gi|530549630|ref|YP_008430183.1| - 1.1e-17 64.9 0.0 2.1e-17 64.0 0.0 1.5 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain PIN_9 PF18477.1 gi|530549630|ref|YP_008430183.1| - 0.005 17.1 0.8 0.011 16.1 0.4 1.7 2 0 0 2 2 2 1 PIN like domain PsbU PF06514.11 gi|530549630|ref|YP_008430183.1| - 0.047 13.7 0.0 0.11 12.6 0.0 1.6 1 0 0 1 1 1 0 Photosystem II 12 kDa extrinsic protein (PsbU) F-box_4 PF15966.5 gi|530549630|ref|YP_008430183.1| - 0.11 12.3 0.0 0.23 11.3 0.0 1.4 1 0 0 1 1 1 0 F-box Transp_cyt_pur PF02133.15 gi|530549631|ref|YP_008430184.1| - 4.6e-16 58.6 47.6 2.3e-15 56.3 47.6 1.9 1 1 0 1 1 1 1 Permease for cytosine/purines, uracil, thiamine, allantoin DcuC PF03606.15 gi|530549632|ref|YP_008430185.1| - 3e-109 365.6 39.0 3.8e-109 365.2 39.0 1.1 1 0 0 1 1 1 1 C4-dicarboxylate anaerobic carrier ABG_transport PF03806.13 gi|530549632|ref|YP_008430185.1| - 4.1e-11 41.8 35.1 8.5e-08 30.9 14.5 2.2 2 1 0 2 2 2 2 AbgT putative transporter family SCFA_trans PF02667.14 gi|530549632|ref|YP_008430185.1| - 5.1e-08 32.3 18.0 1.2e-07 31.2 16.9 2.0 2 0 0 2 2 2 1 Short chain fatty acid transporter Na_H_antiporter PF03553.14 gi|530549632|ref|YP_008430185.1| - 4.6e-06 26.1 37.3 2.2e-05 23.9 18.0 2.4 1 1 1 2 2 2 2 Na+/H+ antiporter family Peptidase_M20 PF01546.28 gi|530549633|ref|YP_008430186.1| - 4.2e-37 127.9 0.0 5.3e-37 127.5 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|530549633|ref|YP_008430186.1| - 3.8e-17 62.2 0.0 2.7e-16 59.4 0.0 2.3 2 1 1 3 3 3 1 Peptidase dimerisation domain Peptidase_M28 PF04389.17 gi|530549633|ref|YP_008430186.1| - 0.00056 19.7 0.0 0.00097 18.9 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M28 NitrOD2 PF18550.1 gi|530549633|ref|YP_008430186.1| - 0.039 14.1 0.0 0.47 10.6 0.0 2.7 3 0 0 3 3 3 0 Nitrososphaera output domain 2 HTH_24 PF13412.6 gi|530549634|ref|YP_008430187.1| - 7.2e-13 47.9 0.9 3.2e-12 45.8 1.1 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|530549634|ref|YP_008430187.1| - 4.2e-12 45.7 0.8 4.2e-12 45.7 0.8 1.7 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.12 gi|530549634|ref|YP_008430187.1| - 3.2e-07 30.2 1.2 6e-07 29.3 1.2 1.4 1 0 0 1 1 1 1 HTH domain HTH_DeoR PF08220.12 gi|530549634|ref|YP_008430187.1| - 9e-06 25.3 0.7 1.7e-05 24.4 0.7 1.5 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_23 PF13384.6 gi|530549634|ref|YP_008430187.1| - 2.1e-05 24.2 0.2 4.2e-05 23.2 0.2 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.6 gi|530549634|ref|YP_008430187.1| - 9.7e-05 22.4 0.0 0.00033 20.7 0.1 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain GntR PF00392.21 gi|530549634|ref|YP_008430187.1| - 0.00029 20.4 0.1 0.00065 19.3 0.1 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family Trp_repressor PF01371.19 gi|530549634|ref|YP_008430187.1| - 0.00086 19.4 0.2 0.0019 18.3 0.2 1.6 1 0 0 1 1 1 1 Trp repressor protein HTH_38 PF13936.6 gi|530549634|ref|YP_008430187.1| - 0.0013 18.5 0.3 0.0027 17.4 0.3 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_29 PF13551.6 gi|530549634|ref|YP_008430187.1| - 0.0016 18.4 0.2 0.0026 17.7 0.2 1.4 1 0 0 1 1 1 1 Winged helix-turn helix TrmB PF01978.19 gi|530549634|ref|YP_008430187.1| - 0.0017 18.2 0.2 0.0062 16.4 0.0 1.9 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_7 PF02796.15 gi|530549634|ref|YP_008430187.1| - 0.0036 17.3 0.2 0.013 15.6 0.1 1.9 1 1 1 2 2 2 1 Helix-turn-helix domain of resolvase MarR PF01047.22 gi|530549634|ref|YP_008430187.1| - 0.0066 16.3 0.1 0.015 15.2 0.1 1.6 1 0 0 1 1 1 1 MarR family HTH_Tnp_ISL3 PF13542.6 gi|530549634|ref|YP_008430187.1| - 0.0069 15.8 0.0 0.013 14.9 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 HTH_20 PF12840.7 gi|530549634|ref|YP_008430187.1| - 0.012 15.7 0.0 1.3 9.2 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|530549634|ref|YP_008430187.1| - 0.013 15.2 0.0 0.026 14.2 0.0 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 Fe_dep_repress PF01325.19 gi|530549634|ref|YP_008430187.1| - 0.014 15.6 0.0 0.03 14.5 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_50 PF18024.1 gi|530549634|ref|YP_008430187.1| - 0.022 14.3 0.0 0.05 13.2 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_5 PF01022.20 gi|530549634|ref|YP_008430187.1| - 0.024 14.5 0.0 0.66 9.9 0.0 2.3 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family HTH_Crp_2 PF13545.6 gi|530549634|ref|YP_008430187.1| - 0.025 14.5 0.5 0.054 13.5 0.5 1.6 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_3 PF01381.22 gi|530549634|ref|YP_008430187.1| - 0.038 14.1 0.1 0.077 13.1 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix HTH_IclR PF09339.10 gi|530549634|ref|YP_008430187.1| - 0.04 13.7 0.1 0.094 12.5 0.1 1.6 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_Mga PF08280.11 gi|530549634|ref|YP_008430187.1| - 0.047 13.7 0.1 0.079 13.0 0.1 1.4 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain TFIIE_alpha PF02002.17 gi|530549634|ref|YP_008430187.1| - 0.075 12.9 1.9 0.084 12.7 0.4 1.9 2 0 0 2 2 1 0 TFIIE alpha subunit DUF603 PF04645.12 gi|530549634|ref|YP_008430187.1| - 0.11 12.2 0.7 0.35 10.6 0.0 2.0 2 1 1 3 3 3 0 Protein of unknown function, DUF603 HTH_psq PF05225.16 gi|530549634|ref|YP_008430187.1| - 0.17 11.7 0.0 0.32 10.8 0.0 1.4 1 0 0 1 1 1 0 helix-turn-helix, Psq domain Lar_restr_allev PF14354.6 gi|530549635|ref|YP_008430188.1| - 2.5e-06 27.8 0.2 2.7e-06 27.6 0.2 1.1 1 0 0 1 1 1 1 Restriction alleviation protein Lar TF_Zn_Ribbon PF08271.12 gi|530549635|ref|YP_008430188.1| - 0.00014 21.3 0.1 0.33 10.5 0.0 2.2 2 0 0 2 2 2 2 TFIIB zinc-binding zinc_ribbon_13 PF09855.9 gi|530549635|ref|YP_008430188.1| - 0.00049 20.2 1.7 0.0013 18.8 1.7 1.7 1 1 0 1 1 1 1 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) Ribosomal_L37e PF01907.19 gi|530549635|ref|YP_008430188.1| - 0.0018 18.4 1.0 0.025 14.8 0.0 2.1 1 1 1 2 2 2 1 Ribosomal protein L37e zf-RRN7 PF11781.8 gi|530549635|ref|YP_008430188.1| - 0.0073 16.0 0.7 0.13 11.9 0.0 2.2 2 0 0 2 2 2 1 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 PhnA_Zn_Ribbon PF08274.12 gi|530549635|ref|YP_008430188.1| - 0.02 14.8 0.4 3.8 7.5 0.0 2.1 2 0 0 2 2 2 0 PhnA Zinc-Ribbon UPF0547 PF10571.9 gi|530549635|ref|YP_008430188.1| - 0.021 14.9 1.5 5.2 7.2 0.1 2.4 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Prim_Zn_Ribbon PF08273.12 gi|530549635|ref|YP_008430188.1| - 0.024 14.9 0.5 0.32 11.3 0.1 2.1 2 0 0 2 2 2 0 Zinc-binding domain of primase-helicase zf-piccolo PF05715.13 gi|530549635|ref|YP_008430188.1| - 0.036 14.2 0.1 0.047 13.8 0.1 1.2 1 0 0 1 1 1 0 Piccolo Zn-finger Ribosomal_L32p PF01783.23 gi|530549635|ref|YP_008430188.1| - 0.043 14.1 0.3 0.71 10.2 0.0 2.2 2 0 0 2 2 2 0 Ribosomal L32p protein family DNA_RNApol_7kD PF03604.13 gi|530549635|ref|YP_008430188.1| - 0.089 12.5 2.7 0.35 10.6 0.4 2.1 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zinc_ribbon_5 PF13719.6 gi|530549635|ref|YP_008430188.1| - 0.095 12.5 2.6 1.2 8.9 2.5 2.1 1 1 0 1 1 1 0 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|530549635|ref|YP_008430188.1| - 0.097 12.1 2.6 2.6 7.6 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain HypA PF01155.19 gi|530549635|ref|YP_008430188.1| - 0.13 12.3 1.2 1.3 9.1 0.1 2.0 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Sgf11 PF08209.11 gi|530549635|ref|YP_008430188.1| - 0.13 11.9 1.3 7.9 6.1 0.2 2.3 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) Herpes_UL49_1 PF03117.14 gi|530549635|ref|YP_008430188.1| - 0.14 11.4 0.7 0.2 10.9 0.7 1.3 1 1 0 1 1 1 0 UL49 family zf-TFIIB PF13453.6 gi|530549635|ref|YP_008430188.1| - 0.17 11.2 1.8 0.91 8.9 1.8 1.9 1 1 0 1 1 1 0 Transcription factor zinc-finger zf-C3HC PF07967.13 gi|530549635|ref|YP_008430188.1| - 0.24 11.5 1.1 2.2 8.3 0.1 2.0 1 1 1 2 2 2 0 C3HC zinc finger-like TraB PF01963.17 gi|530549636|ref|YP_008430189.1| - 6.5e-15 55.7 0.4 6.9e-14 52.4 0.4 2.0 1 1 0 1 1 1 1 TraB family DUF1825 PF08855.10 gi|530549636|ref|YP_008430189.1| - 0.096 12.6 0.3 0.23 11.4 0.3 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF1825) Lactamase_B_2 PF12706.7 gi|530549637|ref|YP_008430190.1| - 6.2e-20 71.6 0.0 9.5e-09 35.1 0.0 2.1 2 0 0 2 2 2 2 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|530549637|ref|YP_008430190.1| - 1.2e-08 35.3 0.2 7.6e-08 32.6 0.2 2.2 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_4 PF13691.6 gi|530549637|ref|YP_008430190.1| - 3.3e-05 23.5 0.0 6e-05 22.6 0.0 1.4 1 0 0 1 1 1 1 tRNase Z endonuclease TPR_12 PF13424.6 gi|530549640|ref|YP_008430193.1| - 5.5e-08 33.0 4.6 5.5e-08 33.0 4.6 2.6 3 1 1 4 4 4 1 Tetratricopeptide repeat TPR_19 PF14559.6 gi|530549640|ref|YP_008430193.1| - 2.3e-05 24.8 13.0 0.0068 16.9 0.2 3.5 4 1 0 4 4 3 2 Tetratricopeptide repeat RPN7 PF10602.9 gi|530549640|ref|YP_008430193.1| - 4.1e-05 23.4 2.3 4.1e-05 23.4 2.3 2.2 2 0 0 2 2 2 1 26S proteasome subunit RPN7 TPR_1 PF00515.28 gi|530549640|ref|YP_008430193.1| - 4.7e-05 23.0 13.3 0.015 15.1 0.3 3.9 4 1 0 4 4 3 2 Tetratricopeptide repeat TPR_2 PF07719.17 gi|530549640|ref|YP_008430193.1| - 0.00011 22.0 8.1 0.0037 17.3 0.8 5.1 6 0 0 6 6 4 2 Tetratricopeptide repeat TPR_6 PF13174.6 gi|530549640|ref|YP_008430193.1| - 0.00011 22.6 6.4 0.056 14.1 0.4 4.3 3 1 0 3 3 3 1 Tetratricopeptide repeat TPR_7 PF13176.6 gi|530549640|ref|YP_008430193.1| - 0.00015 21.5 7.2 0.19 11.8 0.1 3.6 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_21 PF09976.9 gi|530549640|ref|YP_008430193.1| - 0.0021 17.8 2.9 0.0021 17.8 2.9 2.1 2 1 0 2 2 2 1 Tetratricopeptide repeat-like domain TPR_MalT PF17874.1 gi|530549640|ref|YP_008430193.1| - 0.0053 16.2 2.3 0.012 15.0 2.1 1.6 1 1 0 1 1 1 1 MalT-like TPR region TPR_16 PF13432.6 gi|530549640|ref|YP_008430193.1| - 0.0081 16.8 3.2 0.028 15.1 0.3 2.9 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_20 PF14561.6 gi|530549640|ref|YP_008430193.1| - 0.0089 16.3 4.4 0.14 12.5 0.3 2.9 1 1 1 2 2 2 1 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|530549640|ref|YP_008430193.1| - 0.041 14.1 5.6 0.17 12.1 1.8 3.1 1 1 1 2 2 2 0 Anaphase-promoting complex, cyclosome, subunit 3 TPR_11 PF13414.6 gi|530549640|ref|YP_008430193.1| - 0.063 13.0 6.0 0.89 9.3 0.3 4.0 3 1 1 4 4 3 0 TPR repeat SRP_TPR_like PF17004.5 gi|530549640|ref|YP_008430193.1| - 0.073 13.1 15.9 0.03 14.4 3.5 3.2 1 1 2 3 3 3 0 Putative TPR-like repeat DUF1039 PF06287.11 gi|530549640|ref|YP_008430193.1| - 0.092 13.2 2.2 0.26 11.7 0.1 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF1039) TPR_8 PF13181.6 gi|530549640|ref|YP_008430193.1| - 0.098 12.9 21.3 0.13 12.6 0.7 5.0 5 1 0 5 5 4 0 Tetratricopeptide repeat LppC PF04348.13 gi|530549640|ref|YP_008430193.1| - 0.11 11.2 0.5 0.16 10.8 0.5 1.1 1 0 0 1 1 1 0 LppC putative lipoprotein DUF1955 PF09205.10 gi|530549640|ref|YP_008430193.1| - 0.12 12.2 1.4 0.96 9.2 0.0 2.6 1 1 1 3 3 3 0 Domain of unknown function (DUF1955) TPR_4 PF07721.14 gi|530549640|ref|YP_008430193.1| - 0.14 12.9 0.2 0.63 10.8 0.0 2.3 2 0 0 2 2 1 0 Tetratricopeptide repeat HisKA_2 PF07568.12 gi|530549640|ref|YP_008430193.1| - 0.15 12.2 4.1 45 4.2 0.1 4.4 4 1 1 5 5 5 0 Histidine kinase TPR_10 PF13374.6 gi|530549640|ref|YP_008430193.1| - 0.21 11.5 10.6 0.45 10.5 0.2 3.8 3 0 0 3 3 3 0 Tetratricopeptide repeat TPR_17 PF13431.6 gi|530549640|ref|YP_008430193.1| - 0.21 12.1 1.9 54 4.5 0.1 3.9 4 0 0 4 4 2 0 Tetratricopeptide repeat TPR_14 PF13428.6 gi|530549640|ref|YP_008430193.1| - 0.46 11.4 12.5 0.51 11.3 0.4 4.5 2 1 2 4 4 4 0 Tetratricopeptide repeat CorA PF01544.18 gi|530549640|ref|YP_008430193.1| - 0.56 9.5 6.3 0.2 10.9 3.3 1.7 2 0 0 2 2 2 0 CorA-like Mg2+ transporter protein DUF327 PF03885.13 gi|530549640|ref|YP_008430193.1| - 0.86 9.6 11.7 0.088 12.8 1.6 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF327) Acetyltransf_1 PF00583.25 gi|530549641|ref|YP_008430194.1| - 1.3e-12 48.0 0.5 2.7e-12 47.0 0.1 1.8 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|530549641|ref|YP_008430194.1| - 4.2e-12 46.1 0.0 2.4e-11 43.7 0.0 1.9 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|530549641|ref|YP_008430194.1| - 2.5e-10 40.6 0.4 7.2e-10 39.2 0.1 1.8 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|530549641|ref|YP_008430194.1| - 2.3e-05 24.3 0.0 4.3e-05 23.4 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.7 gi|530549641|ref|YP_008430194.1| - 9.2e-05 22.5 0.0 0.00017 21.7 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|530549641|ref|YP_008430194.1| - 0.0036 17.4 0.1 0.049 13.8 0.0 2.2 2 0 0 2 2 2 1 GCN5-related N-acetyl-transferase NTP_transf_3 PF12804.7 gi|530549642|ref|YP_008430195.1| - 2.5e-27 96.2 0.0 3e-27 95.9 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|530549642|ref|YP_008430195.1| - 3.3e-05 23.7 0.0 4.3e-05 23.4 0.0 1.2 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CTP_transf_3 PF02348.19 gi|530549642|ref|YP_008430195.1| - 0.00034 20.6 0.0 0.00047 20.1 0.0 1.4 1 1 0 1 1 1 1 Cytidylyltransferase NTP_transferase PF00483.23 gi|530549642|ref|YP_008430195.1| - 0.016 14.8 0.0 0.025 14.1 0.0 1.4 1 0 0 1 1 1 0 Nucleotidyl transferase Orthopox_A43R PF06517.11 gi|530549644|ref|YP_008430197.1| - 0.063 13.1 0.0 15 5.3 0.0 2.3 2 0 0 2 2 2 0 Orthopoxvirus A43R protein DUF4932 PF16286.5 gi|530549645|ref|YP_008430198.1| - 1.2e-28 100.4 13.3 2.1e-28 99.6 13.3 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4932) S_layer_C PF05124.12 gi|530549645|ref|YP_008430198.1| - 2.9e-07 30.7 0.2 0.02 14.9 0.1 2.3 2 0 0 2 2 2 2 S-layer like family, C-terminal region Adenylsucc_synt PF00709.21 gi|530549646|ref|YP_008430199.1| - 2.4e-91 306.8 1.9 1.4e-43 149.4 0.0 3.0 1 1 2 3 3 3 3 Adenylosuccinate synthetase DUF2268 PF10026.9 gi|530549647|ref|YP_008430200.1| - 0.021 14.4 0.3 0.05 13.2 0.3 1.7 1 1 0 1 1 1 0 Predicted Zn-dependent protease (DUF2268) DUF4110 PF13422.6 gi|530549647|ref|YP_008430200.1| - 0.07 13.2 2.2 13 5.9 0.0 2.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4110) Hydrolase_4 PF12146.8 gi|530549649|ref|YP_008430202.1| - 6.4e-70 235.1 0.0 7.5e-70 234.9 0.0 1.0 1 0 0 1 1 1 1 Serine aminopeptidase, S33 Abhydrolase_1 PF00561.20 gi|530549649|ref|YP_008430202.1| - 1.5e-24 87.0 0.0 2.7e-21 76.4 0.0 2.1 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|530549649|ref|YP_008430202.1| - 9.1e-19 68.9 0.0 1.1e-18 68.6 0.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Peptidase_S9 PF00326.21 gi|530549649|ref|YP_008430202.1| - 2.4e-08 33.7 0.0 0.00031 20.3 0.0 2.3 2 1 0 2 2 2 2 Prolyl oligopeptidase family Abhydrolase_2 PF02230.16 gi|530549649|ref|YP_008430202.1| - 5.8e-05 23.0 0.1 0.0044 16.8 0.0 2.4 1 1 1 2 2 2 1 Phospholipase/Carboxylesterase Abhydrolase_5 PF12695.7 gi|530549649|ref|YP_008430202.1| - 0.00025 20.9 0.0 0.0034 17.2 0.0 2.4 2 1 0 2 2 2 1 Alpha/beta hydrolase family Ser_hydrolase PF06821.13 gi|530549649|ref|YP_008430202.1| - 0.00076 19.4 0.0 0.0017 18.2 0.0 1.5 1 0 0 1 1 1 1 Serine hydrolase Thioesterase PF00975.20 gi|530549649|ref|YP_008430202.1| - 0.00098 19.3 0.0 0.0016 18.6 0.0 1.3 1 0 0 1 1 1 1 Thioesterase domain Esterase PF00756.20 gi|530549649|ref|YP_008430202.1| - 0.0015 18.3 0.0 0.0018 18.0 0.0 1.3 1 1 0 1 1 1 1 Putative esterase Peptidase_S15 PF02129.18 gi|530549649|ref|YP_008430202.1| - 0.0019 17.9 0.0 0.083 12.5 0.0 2.6 1 1 0 1 1 1 1 X-Pro dipeptidyl-peptidase (S15 family) Abhydrolase_4 PF08386.10 gi|530549649|ref|YP_008430202.1| - 0.0053 16.8 0.0 0.014 15.5 0.0 1.7 1 0 0 1 1 1 1 TAP-like protein FSH1 PF03959.13 gi|530549649|ref|YP_008430202.1| - 0.039 13.6 0.0 0.14 11.8 0.0 1.8 1 1 0 1 1 1 0 Serine hydrolase (FSH1) DLH PF01738.18 gi|530549649|ref|YP_008430202.1| - 0.045 13.3 0.0 0.23 11.0 0.0 1.9 2 0 0 2 2 2 0 Dienelactone hydrolase family AXE1 PF05448.12 gi|530549649|ref|YP_008430202.1| - 0.049 12.3 0.0 0.15 10.7 0.0 1.7 2 0 0 2 2 2 0 Acetyl xylan esterase (AXE1) DpaA_N PF16924.5 gi|530549649|ref|YP_008430202.1| - 0.06 13.4 0.0 0.15 12.1 0.0 1.6 2 0 0 2 2 2 0 Dipicolinate synthase subunit A N-terminal domain DUF1749 PF08538.10 gi|530549649|ref|YP_008430202.1| - 0.09 11.8 0.0 0.14 11.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1749) UPF0227 PF05728.12 gi|530549649|ref|YP_008430202.1| - 0.12 12.3 0.0 0.24 11.3 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0227) RMMBL PF07521.12 gi|530549649|ref|YP_008430202.1| - 0.13 12.2 0.0 0.65 10.0 0.0 2.0 2 0 0 2 2 2 0 Zn-dependent metallo-hydrolase RNA specificity domain PhoPQ_related PF10142.9 gi|530549649|ref|YP_008430202.1| - 0.21 10.2 0.0 0.3 9.7 0.0 1.2 1 0 0 1 1 1 0 PhoPQ-activated pathogenicity-related protein TrmO PF01980.16 gi|530549650|ref|YP_008430203.1| - 7.9e-29 100.3 0.0 9.2e-29 100.1 0.0 1.0 1 0 0 1 1 1 1 tRNA-methyltransferase O AdoHcyase PF05221.17 gi|530549651|ref|YP_008430204.1| - 1e-67 228.5 0.0 2.2e-36 125.5 0.0 2.0 1 1 1 2 2 2 2 S-adenosyl-L-homocysteine hydrolase AdoHcyase_NAD PF00670.21 gi|530549651|ref|YP_008430204.1| - 4e-51 173.3 0.0 6.6e-51 172.6 0.0 1.3 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|530549651|ref|YP_008430204.1| - 1.6e-08 34.1 0.0 4e-08 32.8 0.0 1.6 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.12 gi|530549651|ref|YP_008430204.1| - 9.9e-06 25.2 0.0 1.9e-05 24.3 0.0 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain 3HCDH_N PF02737.18 gi|530549651|ref|YP_008430204.1| - 0.0023 17.9 1.8 0.21 11.5 0.5 2.4 2 0 0 2 2 2 2 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TrkA_N PF02254.18 gi|530549651|ref|YP_008430204.1| - 0.018 15.3 0.2 0.046 14.0 0.1 1.8 2 0 0 2 2 2 0 TrkA-N domain Pyr_redox_2 PF07992.14 gi|530549651|ref|YP_008430204.1| - 0.024 13.9 0.0 0.047 12.9 0.0 1.5 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 gi|530549651|ref|YP_008430204.1| - 0.039 13.2 0.2 0.082 12.2 0.2 1.5 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain THF_DHG_CYH_C PF02882.19 gi|530549651|ref|YP_008430204.1| - 0.041 13.2 0.2 0.29 10.4 0.2 2.0 1 1 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain DUF2268 PF10026.9 gi|530549652|ref|YP_008430205.1| - 1.4e-10 41.1 0.0 4e-10 39.6 0.0 1.7 1 1 0 1 1 1 1 Predicted Zn-dependent protease (DUF2268) Cyclase PF04199.13 gi|530549653|ref|YP_008430206.1| - 1.3e-25 90.3 0.0 2.3e-25 89.4 0.0 1.4 1 1 0 1 1 1 1 Putative cyclase AbrB_C PF18277.1 gi|530549653|ref|YP_008430206.1| - 0.079 12.6 0.0 0.21 11.2 0.0 1.6 1 0 0 1 1 1 0 AbrB C-terminal domain NPP PF08384.10 gi|530549653|ref|YP_008430206.1| - 0.16 12.0 0.1 0.28 11.3 0.1 1.3 1 0 0 1 1 1 0 Pro-opiomelanocortin, N-terminal region EamA PF00892.20 gi|530549654|ref|YP_008430207.1| - 0.0001 22.5 2.2 0.00012 22.3 2.2 1.0 1 0 0 1 1 1 1 EamA-like transporter family RseC_MucC PF04246.12 gi|530549654|ref|YP_008430207.1| - 0.018 15.0 0.5 0.018 15.0 0.5 1.1 1 0 0 1 1 1 0 Positive regulator of sigma(E), RseC/MucC DUF3169 PF11368.8 gi|530549654|ref|YP_008430207.1| - 0.031 13.8 0.8 0.038 13.5 0.8 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3169) TPT PF03151.16 gi|530549654|ref|YP_008430207.1| - 0.038 13.3 0.6 0.038 13.3 0.6 1.0 1 0 0 1 1 1 0 Triose-phosphate Transporter family GCV_T PF01571.21 gi|530549655|ref|YP_008430208.1| - 8.1e-98 326.9 0.0 9.8e-98 326.6 0.0 1.1 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain GCV_T_C PF08669.11 gi|530549655|ref|YP_008430208.1| - 4.4e-21 74.6 0.0 1e-20 73.4 0.0 1.6 1 0 0 1 1 1 1 Glycine cleavage T-protein C-terminal barrel domain Usp PF00582.26 gi|530549656|ref|YP_008430209.1| - 1.8e-44 151.6 4.6 1.9e-26 93.2 0.2 2.6 2 1 0 2 2 2 2 Universal stress protein family UPF0180 PF03698.13 gi|530549656|ref|YP_008430209.1| - 0.018 15.2 0.6 0.11 12.6 0.1 2.3 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0180) ParBc PF02195.18 gi|530549656|ref|YP_008430209.1| - 0.074 13.4 0.9 0.73 10.2 0.3 2.4 2 0 0 2 2 2 0 ParB-like nuclease domain DUF2207 PF09972.9 gi|530549657|ref|YP_008430210.1| - 0.066 12.0 0.2 0.076 11.8 0.2 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) Ac76 PF05814.11 gi|530549657|ref|YP_008430210.1| - 0.12 12.5 2.2 0.38 10.8 2.2 2.0 1 1 1 2 2 2 0 Orf76 (Ac76) Creatininase PF02633.14 gi|530549658|ref|YP_008430211.1| - 5.3e-64 216.0 0.0 6e-64 215.8 0.0 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase Glycos_transf_1 PF00534.20 gi|530549659|ref|YP_008430212.1| - 1.4e-48 164.7 0.0 3e-48 163.6 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|530549659|ref|YP_008430212.1| - 1e-38 132.8 0.2 2.3e-38 131.6 0.2 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|530549659|ref|YP_008430212.1| - 6.3e-27 94.6 0.0 4.6e-26 91.8 0.1 2.0 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.6 gi|530549659|ref|YP_008430212.1| - 4.5e-15 55.8 0.0 4.4e-14 52.6 0.0 2.2 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|530549659|ref|YP_008430212.1| - 6.2e-10 39.7 0.0 2.2e-09 38.0 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_transf_5 PF08323.11 gi|530549659|ref|YP_008430212.1| - 5.1e-07 29.6 0.2 0.0016 18.2 0.0 2.3 2 0 0 2 2 2 2 Starch synthase catalytic domain Glyco_trans_4_2 PF13477.6 gi|530549659|ref|YP_008430212.1| - 7.3e-07 29.3 0.1 1.2e-06 28.6 0.1 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like PIGA PF08288.12 gi|530549659|ref|YP_008430212.1| - 0.00023 21.7 0.5 0.00058 20.4 0.5 1.6 1 0 0 1 1 1 1 PIGA (GPI anchor biosynthesis) Glyco_trans_4_5 PF16994.5 gi|530549659|ref|YP_008430212.1| - 0.0015 18.1 0.0 0.0033 17.1 0.0 1.5 1 0 0 1 1 1 1 Glycosyl-transferase family 4 HAD_2 PF13419.6 gi|530549659|ref|YP_008430212.1| - 0.0046 17.1 0.5 0.7 10.0 0.0 3.1 3 0 0 3 3 3 1 Haloacid dehalogenase-like hydrolase Glyco_transf_28 PF03033.20 gi|530549659|ref|YP_008430212.1| - 0.06 13.4 0.3 0.19 11.8 0.0 2.0 2 0 0 2 2 2 0 Glycosyltransferase family 28 N-terminal domain Hydrolase_6 PF13344.6 gi|530549659|ref|YP_008430212.1| - 0.12 12.4 0.0 7.4 6.8 0.0 2.4 2 0 0 2 2 2 0 Haloacid dehalogenase-like hydrolase LPG_synthase_TM PF03706.13 gi|530549660|ref|YP_008430213.1| - 1.9e-22 80.2 29.5 2.4e-22 79.9 29.5 1.1 1 0 0 1 1 1 1 Lysylphosphatidylglycerol synthase TM region Pertus-S5-tox PF09276.10 gi|530549660|ref|YP_008430213.1| - 0.16 12.0 0.1 0.41 10.7 0.1 1.7 1 1 0 1 1 1 0 Pertussis toxin S5 subunit UbiA PF01040.18 gi|530549661|ref|YP_008430214.1| - 7.4e-33 113.9 11.7 9.1e-33 113.6 11.7 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family Gemini_mov PF01708.16 gi|530549661|ref|YP_008430214.1| - 1.2 8.9 0.0 1.2 8.9 0.0 3.2 2 2 1 3 3 3 0 Geminivirus putative movement protein TrmB PF01978.19 gi|530549662|ref|YP_008430215.1| - 2.4e-11 43.3 0.5 3.6e-11 42.8 0.5 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 gi|530549662|ref|YP_008430215.1| - 4.4e-06 26.5 1.5 7.8e-06 25.7 1.5 1.5 1 1 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|530549662|ref|YP_008430215.1| - 3.2e-05 23.9 0.3 4.5e-05 23.4 0.3 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HxlR PF01638.17 gi|530549662|ref|YP_008430215.1| - 4.6e-05 23.2 0.7 6.1e-05 22.8 0.7 1.2 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_11 PF08279.12 gi|530549662|ref|YP_008430215.1| - 4.8e-05 23.2 0.3 7.6e-05 22.6 0.3 1.4 1 0 0 1 1 1 1 HTH domain HTH_24 PF13412.6 gi|530549662|ref|YP_008430215.1| - 0.0008 18.9 1.5 0.0017 17.8 1.5 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TFIIE_alpha PF02002.17 gi|530549662|ref|YP_008430215.1| - 0.00095 19.0 2.0 0.0011 18.8 2.0 1.2 1 0 0 1 1 1 1 TFIIE alpha subunit Dimerisation2 PF16864.5 gi|530549662|ref|YP_008430215.1| - 0.0015 18.5 0.1 0.0018 18.2 0.1 1.2 1 0 0 1 1 1 1 Dimerisation domain DUF2250 PF10007.9 gi|530549662|ref|YP_008430215.1| - 0.0036 17.4 0.9 0.0081 16.3 0.4 1.8 1 1 1 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2250) Replic_Relax PF13814.6 gi|530549662|ref|YP_008430215.1| - 0.004 17.2 0.0 0.0046 17.0 0.0 1.2 1 0 0 1 1 1 1 Replication-relaxation MarR_2 PF12802.7 gi|530549662|ref|YP_008430215.1| - 0.004 17.0 0.1 0.0071 16.2 0.1 1.5 1 0 0 1 1 1 1 MarR family HTH_40 PF14493.6 gi|530549662|ref|YP_008430215.1| - 0.0068 16.8 0.4 0.01 16.2 0.4 1.4 1 1 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.22 gi|530549662|ref|YP_008430215.1| - 0.0074 16.2 0.4 0.015 15.2 0.3 1.7 1 1 0 1 1 1 1 MarR family HTH_9 PF08221.11 gi|530549662|ref|YP_008430215.1| - 0.01 15.9 0.4 0.02 15.0 0.3 1.5 1 1 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain GntR PF00392.21 gi|530549662|ref|YP_008430215.1| - 0.01 15.5 0.3 0.016 14.9 0.3 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_23 PF13384.6 gi|530549662|ref|YP_008430215.1| - 0.011 15.5 0.0 0.019 14.7 0.0 1.3 1 0 0 1 1 1 0 Homeodomain-like domain HTH_Mga PF08280.11 gi|530549662|ref|YP_008430215.1| - 0.015 15.3 4.3 0.019 15.0 1.6 2.2 2 0 0 2 2 2 0 M protein trans-acting positive regulator (MGA) HTH domain HTH_29 PF13551.6 gi|530549662|ref|YP_008430215.1| - 0.02 14.9 0.0 0.03 14.3 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn helix HrcA_DNA-bdg PF03444.15 gi|530549662|ref|YP_008430215.1| - 0.024 14.3 0.0 0.031 13.9 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_38 PF13936.6 gi|530549662|ref|YP_008430215.1| - 0.034 13.9 0.2 0.096 12.5 0.1 1.8 1 1 0 2 2 2 0 Helix-turn-helix domain GerE PF00196.19 gi|530549662|ref|YP_008430215.1| - 0.036 13.6 0.0 0.074 12.6 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family Rrf2 PF02082.20 gi|530549662|ref|YP_008430215.1| - 0.066 13.6 0.2 0.11 12.8 0.1 1.5 1 1 0 1 1 1 0 Transcriptional regulator FaeA PF04703.12 gi|530549662|ref|YP_008430215.1| - 0.083 13.3 0.0 0.13 12.6 0.0 1.4 1 0 0 1 1 1 0 FaeA-like protein EAP30 PF04157.16 gi|530549662|ref|YP_008430215.1| - 0.18 11.1 1.2 1.4 8.2 0.0 2.1 2 0 0 2 2 2 0 EAP30/Vps36 family Spermine_synth PF01564.17 gi|530549663|ref|YP_008430216.1| - 2.1e-50 170.7 0.0 2.9e-50 170.3 0.0 1.2 1 0 0 1 1 1 1 Spermine/spermidine synthase domain Spermine_synt_N PF17284.2 gi|530549663|ref|YP_008430216.1| - 7.3e-12 45.0 0.4 1.6e-11 43.9 0.4 1.6 1 0 0 1 1 1 1 Spermidine synthase tetramerisation domain Methyltransf_25 PF13649.6 gi|530549663|ref|YP_008430216.1| - 0.0024 18.5 0.0 0.007 17.0 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_30 PF05430.11 gi|530549663|ref|YP_008430216.1| - 0.096 12.6 0.0 0.15 12.0 0.0 1.3 1 0 0 1 1 1 0 S-adenosyl-L-methionine-dependent methyltransferase Methyltransf_12 PF08242.12 gi|530549663|ref|YP_008430216.1| - 0.12 13.1 0.0 0.34 11.7 0.0 1.8 1 0 0 1 1 1 0 Methyltransferase domain AdoMet_dc PF02675.15 gi|530547470|ref|YP_008430217.1| - 6.2e-43 145.4 0.1 7e-43 145.2 0.1 1.0 1 0 0 1 1 1 1 S-adenosylmethionine decarboxylase PvlArgDC PF01862.16 gi|530549664|ref|YP_008430218.1| - 8.7e-41 139.4 0.1 1e-40 139.2 0.1 1.0 1 0 0 1 1 1 1 Pyruvoyl-dependent arginine decarboxylase (PvlArgDC) Na_H_Exchanger PF00999.21 gi|530549665|ref|YP_008430219.1| - 6.1e-28 97.7 39.2 7.6e-28 97.4 39.2 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family ACT PF01842.25 gi|530549666|ref|YP_008430220.1| - 6.3e-11 41.9 0.5 9.4e-11 41.3 0.5 1.3 1 0 0 1 1 1 1 ACT domain ACT_4 PF13291.6 gi|530549666|ref|YP_008430220.1| - 5e-06 27.0 1.2 8.6e-06 26.3 1.2 1.4 1 0 0 1 1 1 1 ACT domain ACT_6 PF13740.6 gi|530549666|ref|YP_008430220.1| - 0.0038 17.2 0.1 0.0095 15.9 0.1 1.8 1 1 0 1 1 1 1 ACT domain ACT_7 PF13840.6 gi|530549666|ref|YP_008430220.1| - 0.0064 16.3 0.0 0.011 15.5 0.0 1.4 1 0 0 1 1 1 1 ACT domain Proton_antipo_M PF00361.20 gi|530549667|ref|YP_008430221.1| - 3.3e-47 161.1 21.6 3.3e-47 161.1 21.6 2.2 2 0 0 2 2 2 1 Proton-conducting membrane transporter NADHdeh_related PF10125.9 gi|530549667|ref|YP_008430221.1| - 7e-07 28.8 2.2 7e-07 28.8 2.2 2.2 2 1 0 2 2 2 1 NADH dehydrogenase I, subunit N related protein Oxidored_q2 PF00420.24 gi|530549668|ref|YP_008430222.1| - 8.7e-20 70.3 2.1 1e-19 70.1 2.1 1.0 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DUF4418 PF14387.6 gi|530549668|ref|YP_008430222.1| - 0.0006 20.0 2.4 0.00086 19.5 2.5 1.3 1 1 0 1 1 1 1 Domain of unknown function (DUF4418) LtrA PF06772.11 gi|530549668|ref|YP_008430222.1| - 0.075 12.2 1.8 0.091 12.0 1.8 1.0 1 0 0 1 1 1 0 Bacterial low temperature requirement A protein (LtrA) DUF4040 PF13244.6 gi|530549668|ref|YP_008430222.1| - 0.73 10.0 7.7 0.68 10.1 1.5 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4040) MnhB PF04039.13 gi|530549669|ref|YP_008430223.1| - 1.5e-25 89.9 12.3 1.7e-25 89.7 12.3 1.1 1 0 0 1 1 1 1 Domain related to MnhB subunit of Na+/H+ antiporter Pox_A14 PF05767.12 gi|530549670|ref|YP_008430224.1| - 0.11 12.7 0.0 0.17 12.1 0.0 1.3 1 0 0 1 1 1 0 Poxvirus virion envelope protein A14 DUF4040 PF13244.6 gi|530549671|ref|YP_008430225.1| - 3.4e-11 43.1 7.7 3.9e-11 42.9 7.7 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4040) DUF4491 PF14898.6 gi|530549671|ref|YP_008430225.1| - 0.21 12.0 3.5 0.23 11.9 3.5 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4491) Coiled-coil_56 PF09813.9 gi|530549671|ref|YP_008430225.1| - 0.67 10.0 2.3 1.2 9.3 0.2 2.1 1 1 2 3 3 3 0 Coiled-coil domain-containing protein 56 PhaG_MnhG_YufB PF03334.14 gi|530549672|ref|YP_008430226.1| - 5.3e-23 81.1 6.2 6.1e-23 80.9 6.2 1.0 1 0 0 1 1 1 1 Na+/H+ antiporter subunit MrpF_PhaF PF04066.13 gi|530549673|ref|YP_008430227.1| - 6e-14 52.2 4.1 6e-14 52.2 4.1 1.6 2 0 0 2 2 2 1 Multiple resistance and pH regulation protein F (MrpF / PhaF) MNHE PF01899.16 gi|530549674|ref|YP_008430228.1| - 1e-38 132.4 1.3 1.2e-38 132.1 1.3 1.1 1 0 0 1 1 1 1 Na+/H+ ion antiporter subunit NYN PF01936.18 gi|530549675|ref|YP_008430229.1| - 5.3e-18 65.9 0.0 6.8e-18 65.5 0.0 1.1 1 0 0 1 1 1 1 NYN domain DUF374 PF04028.13 gi|530549675|ref|YP_008430229.1| - 0.0048 16.4 0.1 0.033 13.7 0.1 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF374) NYN PF01936.18 gi|530549676|ref|YP_008430230.1| - 2.4e-22 80.0 0.0 3e-22 79.7 0.0 1.1 1 0 0 1 1 1 1 NYN domain DUF460 PF04312.13 gi|530549676|ref|YP_008430230.1| - 0.017 14.8 0.7 0.42 10.3 0.1 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF460) DUF2258 PF10015.9 gi|530549677|ref|YP_008430231.1| - 7.7e-23 80.4 2.7 1.2e-22 79.8 0.1 2.3 2 1 1 3 3 3 1 Uncharacterized protein conserved in archaea (DUF2258) Nmad5 PF18757.1 gi|530549677|ref|YP_008430231.1| - 0.00018 21.8 2.7 0.00023 21.5 2.7 1.0 1 0 0 1 1 1 1 Nucleotide modification associated domain 5 Lipoprotein_7 PF01540.16 gi|530549677|ref|YP_008430231.1| - 0.0027 17.1 3.5 0.0028 17.0 3.5 1.1 1 0 0 1 1 1 1 Adhesin lipoprotein DUF1967 PF09269.11 gi|530549677|ref|YP_008430231.1| - 0.022 14.7 0.6 0.054 13.4 0.1 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF1967) DUF3139 PF11337.8 gi|530549677|ref|YP_008430231.1| - 0.024 15.3 0.1 0.039 14.6 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3139) EFG_II PF14492.6 gi|530549677|ref|YP_008430231.1| - 0.19 11.8 2.8 2.8 8.1 0.4 2.4 1 1 1 2 2 2 0 Elongation Factor G, domain II AAA_23 PF13476.6 gi|530549677|ref|YP_008430231.1| - 0.19 12.2 7.4 0.24 11.9 7.4 1.1 1 0 0 1 1 1 0 AAA domain DUF4140 PF13600.6 gi|530549677|ref|YP_008430231.1| - 3.1 8.3 6.2 13 6.3 6.2 2.1 1 1 0 1 1 1 0 N-terminal domain of unknown function (DUF4140) Med21 PF11221.8 gi|530549677|ref|YP_008430231.1| - 4.6 7.5 10.3 4.3 7.6 9.4 1.5 1 1 0 1 1 1 0 Subunit 21 of Mediator complex ADK PF00406.22 gi|530549678|ref|YP_008430232.1| - 7.4e-39 133.3 0.0 9.1e-39 133.0 0.0 1.1 1 0 0 1 1 1 1 Adenylate kinase AAA_17 PF13207.6 gi|530549678|ref|YP_008430232.1| - 1.4e-19 70.8 0.0 2.3e-19 70.2 0.0 1.3 1 0 0 1 1 1 1 AAA domain ADK_lid PF05191.14 gi|530549678|ref|YP_008430232.1| - 8.1e-18 64.1 2.9 1.2e-17 63.5 2.9 1.3 1 0 0 1 1 1 1 Adenylate kinase, active site lid AAA_33 PF13671.6 gi|530549678|ref|YP_008430232.1| - 1.3e-06 28.7 0.0 1.9e-06 28.1 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|530549678|ref|YP_008430232.1| - 8.8e-06 26.3 0.0 1.9e-05 25.2 0.0 1.6 1 0 0 1 1 1 1 AAA domain Cytidylate_kin PF02224.18 gi|530549678|ref|YP_008430232.1| - 0.0038 17.0 0.0 0.0068 16.2 0.0 1.4 1 0 0 1 1 1 1 Cytidylate kinase AAA_22 PF13401.6 gi|530549678|ref|YP_008430232.1| - 0.029 14.7 0.0 0.048 13.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain A2L_zn_ribbon PF08792.10 gi|530549678|ref|YP_008430232.1| - 0.042 13.6 0.7 2 8.2 0.0 2.3 2 0 0 2 2 2 0 A2L zinc ribbon domain AAA PF00004.29 gi|530549678|ref|YP_008430232.1| - 0.089 13.2 0.0 0.13 12.7 0.0 1.3 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Zeta_toxin PF06414.12 gi|530549678|ref|YP_008430232.1| - 0.11 11.7 0.0 0.94 8.7 0.0 2.0 1 1 0 1 1 1 0 Zeta toxin AAA_24 PF13479.6 gi|530549678|ref|YP_008430232.1| - 0.13 12.0 0.0 0.27 10.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 gi|530549678|ref|YP_008430232.1| - 0.13 11.6 0.0 0.21 10.9 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_29 PF13555.6 gi|530549678|ref|YP_008430232.1| - 0.18 11.6 0.0 0.3 10.8 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain ABC_tran PF00005.27 gi|530549678|ref|YP_008430232.1| - 0.21 12.1 0.0 0.26 11.8 0.0 1.3 1 0 0 1 1 1 0 ABC transporter zf-RRN7 PF11781.8 gi|530549678|ref|YP_008430232.1| - 0.22 11.2 4.3 0.53 10.0 0.3 2.3 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Prok-RING_1 PF14446.6 gi|530549678|ref|YP_008430232.1| - 0.77 9.7 3.1 4.6 7.2 0.2 2.2 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 Thiamine_BP PF01910.17 gi|530549679|ref|YP_008430233.1| - 3.6e-32 110.1 0.1 4e-32 110.0 0.1 1.0 1 0 0 1 1 1 1 Thiamine-binding protein Ykof PF07615.11 gi|530549679|ref|YP_008430233.1| - 0.097 13.2 0.0 0.12 12.9 0.0 1.2 1 0 0 1 1 1 0 YKOF-related Family Methyltransf_11 PF08241.12 gi|530549680|ref|YP_008430234.1| - 1.6e-30 105.6 0.0 2.7e-30 104.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|530549680|ref|YP_008430234.1| - 1.5e-28 99.4 0.0 2.3e-28 98.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|530549680|ref|YP_008430234.1| - 1.4e-25 90.0 0.0 1.7e-25 89.8 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|530549680|ref|YP_008430234.1| - 6.7e-24 84.4 0.0 9.1e-24 84.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|530549680|ref|YP_008430234.1| - 6.9e-20 71.4 0.0 2.7e-19 69.4 0.0 1.8 1 1 1 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|530549680|ref|YP_008430234.1| - 1.1e-16 61.3 0.0 1.7e-16 60.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.12 gi|530549680|ref|YP_008430234.1| - 8.5e-08 32.0 0.0 1.5e-07 31.3 0.0 1.4 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW TehB PF03848.14 gi|530549680|ref|YP_008430234.1| - 9.3e-08 31.7 0.0 1.3e-07 31.3 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB CMAS PF02353.20 gi|530549680|ref|YP_008430234.1| - 1.8e-07 30.7 0.0 2.2e-07 30.5 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase MTS PF05175.14 gi|530549680|ref|YP_008430234.1| - 1.1e-06 28.3 0.0 1.6e-06 27.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain FtsJ PF01728.19 gi|530549680|ref|YP_008430234.1| - 2e-06 28.0 0.0 7.3e-05 22.9 0.0 2.1 1 1 0 2 2 2 1 FtsJ-like methyltransferase Methyltransf_29 PF03141.16 gi|530549680|ref|YP_008430234.1| - 1.9e-05 23.5 0.0 2.5e-05 23.1 0.0 1.1 1 0 0 1 1 1 1 Putative S-adenosyl-L-methionine-dependent methyltransferase DREV PF05219.12 gi|530549680|ref|YP_008430234.1| - 1.9e-05 23.9 0.0 2.8e-05 23.4 0.0 1.2 1 0 0 1 1 1 1 DREV methyltransferase NodS PF05401.11 gi|530549680|ref|YP_008430234.1| - 2.6e-05 23.9 0.0 3.5e-05 23.5 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_8 PF05148.15 gi|530549680|ref|YP_008430234.1| - 0.00037 20.4 0.0 0.00095 19.1 0.0 1.7 1 1 0 1 1 1 1 Hypothetical methyltransferase Methyltransf_9 PF08003.11 gi|530549680|ref|YP_008430234.1| - 0.0012 17.8 0.0 0.0024 16.9 0.0 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF1698) RrnaAD PF00398.20 gi|530549680|ref|YP_008430234.1| - 0.0024 17.0 0.0 0.0032 16.6 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase tRNA_U5-meth_tr PF05958.11 gi|530549680|ref|YP_008430234.1| - 0.0025 16.9 0.0 0.0034 16.4 0.0 1.1 1 0 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase PCMT PF01135.19 gi|530549680|ref|YP_008430234.1| - 0.0075 16.0 0.0 0.013 15.2 0.0 1.4 2 0 0 2 2 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_32 PF13679.6 gi|530549680|ref|YP_008430234.1| - 0.01 15.8 0.0 0.015 15.3 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain TPMT PF05724.11 gi|530549680|ref|YP_008430234.1| - 0.015 14.9 0.0 0.031 13.9 0.0 1.7 1 1 0 1 1 1 0 Thiopurine S-methyltransferase (TPMT) Methyltransf_33 PF10017.9 gi|530549680|ref|YP_008430234.1| - 0.025 13.7 0.0 0.4 9.8 0.0 2.0 1 1 1 2 2 2 0 Histidine-specific methyltransferase, SAM-dependent Methyltransf_18 PF12847.7 gi|530549680|ref|YP_008430234.1| - 0.031 14.2 0.0 0.046 13.7 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|530549680|ref|YP_008430234.1| - 0.033 13.8 0.0 0.05 13.3 0.0 1.2 1 0 0 1 1 1 0 Conserved hypothetical protein 95 Pox_MCEL PF03291.16 gi|530549680|ref|YP_008430234.1| - 0.039 13.0 0.0 0.9 8.6 0.0 2.1 1 1 0 1 1 1 0 mRNA capping enzyme Methyltransf_4 PF02390.17 gi|530549680|ref|YP_008430234.1| - 0.11 12.0 0.0 0.27 10.7 0.0 1.7 2 0 0 2 2 2 0 Putative methyltransferase PrmA PF06325.13 gi|530549680|ref|YP_008430234.1| - 0.11 11.9 0.0 0.15 11.4 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) ParBc PF02195.18 gi|530549681|ref|YP_008430235.1| - 4.4e-10 39.7 0.0 7.2e-10 39.0 0.0 1.4 1 1 0 1 1 1 1 ParB-like nuclease domain ParBc_2 PF08857.11 gi|530549681|ref|YP_008430235.1| - 0.0014 18.8 0.1 0.0054 16.8 0.1 1.8 1 1 0 1 1 1 1 Putative ParB-like nuclease Nre_C PF04895.12 gi|530549681|ref|YP_008430235.1| - 0.073 13.0 0.0 0.11 12.4 0.0 1.3 1 0 0 1 1 1 0 Archaeal Nre, C-terminal Ion_trans_2 PF07885.16 gi|530549682|ref|YP_008430236.1| - 1.8e-13 50.2 7.0 4.3e-13 49.0 6.9 1.7 1 1 0 1 1 1 1 Ion channel zf-C3Hc3H PF13891.6 gi|530549682|ref|YP_008430236.1| - 0.0048 17.3 0.1 0.008 16.5 0.1 1.3 1 0 0 1 1 1 1 Potential DNA-binding domain Pentapeptide_3 PF13576.6 gi|530549682|ref|YP_008430236.1| - 0.0058 16.8 0.0 2.2 8.5 0.0 3.8 4 0 0 4 4 4 1 Pentapeptide repeats (9 copies) NAD_kinase PF01513.21 gi|530549683|ref|YP_008430237.1| - 2.7e-47 161.4 0.0 3.1e-47 161.2 0.0 1.0 1 0 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.24 gi|530549683|ref|YP_008430237.1| - 6.1e-06 25.9 0.1 4e-05 23.2 0.0 2.5 3 0 0 3 3 3 1 Diacylglycerol kinase catalytic domain WXG100 PF06013.12 gi|530549684|ref|YP_008430238.1| - 0.087 13.1 0.1 4.5 7.6 0.0 2.7 3 0 0 3 3 3 0 Proteins of 100 residues with WXG NdhM PF10664.9 gi|530549684|ref|YP_008430238.1| - 0.18 12.1 2.0 0.22 11.8 0.3 2.1 2 0 0 2 2 2 0 Cyanobacterial and plastid NDH-1 subunit M Glyoxalase_2 PF12681.7 gi|530549684|ref|YP_008430238.1| - 0.19 11.7 4.7 0.22 11.4 0.4 2.8 2 1 0 3 3 3 0 Glyoxalase-like domain HalX PF08663.10 gi|530549684|ref|YP_008430238.1| - 7.8 6.9 10.4 0.66 10.3 0.3 2.9 3 0 0 3 3 3 0 HalX domain zf-C2H2 PF00096.26 gi|530549685|ref|YP_008430239.1| - 3e-06 27.4 1.5 4.3e-06 26.9 1.5 1.2 1 0 0 1 1 1 1 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 gi|530549685|ref|YP_008430239.1| - 0.00015 22.4 0.8 0.00021 21.9 0.8 1.3 1 0 0 1 1 1 1 C2H2-type zinc finger DUF629 PF04780.12 gi|530549685|ref|YP_008430239.1| - 0.0054 15.3 0.0 0.0054 15.3 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF629) GAGA PF09237.11 gi|530549685|ref|YP_008430239.1| - 0.014 15.2 0.1 0.016 15.0 0.1 1.2 1 0 0 1 1 1 0 GAGA factor zf-Mss51 PF13824.6 gi|530549685|ref|YP_008430239.1| - 0.038 14.1 0.1 0.044 13.9 0.1 1.3 1 1 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 FOXP-CC PF16159.5 gi|530549685|ref|YP_008430239.1| - 0.051 14.2 0.1 0.066 13.9 0.1 1.1 1 0 0 1 1 1 0 FOXP coiled-coil domain zf-FPG_IleRS PF06827.14 gi|530549685|ref|YP_008430239.1| - 0.055 13.3 1.0 0.097 12.5 1.0 1.6 1 1 0 1 1 1 0 Zinc finger found in FPG and IleRS zf-Di19 PF05605.12 gi|530549685|ref|YP_008430239.1| - 0.081 13.2 0.2 0.11 12.9 0.2 1.1 1 0 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding zf-CSL PF05207.13 gi|530549685|ref|YP_008430239.1| - 0.13 12.0 0.0 0.13 12.0 0.0 1.1 1 0 0 1 1 1 0 CSL zinc finger CW_binding_2 PF04122.12 gi|530549686|ref|YP_008430240.1| - 1.9e-10 41.2 0.1 0.00052 20.6 0.1 2.2 2 0 0 2 2 2 2 Putative cell wall binding repeat 2 HTH_Crp_2 PF13545.6 gi|530549686|ref|YP_008430240.1| - 1.6e-06 28.0 0.0 3.3e-06 27.0 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain MarR PF01047.22 gi|530549686|ref|YP_008430240.1| - 5.6e-06 26.2 0.0 1.1e-05 25.3 0.0 1.4 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|530549686|ref|YP_008430240.1| - 9.8e-06 25.4 0.0 1.8e-05 24.5 0.0 1.4 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|530549686|ref|YP_008430240.1| - 4.2e-05 23.3 0.4 9.1e-05 22.3 0.4 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|530549686|ref|YP_008430240.1| - 0.0001 22.0 0.0 0.00018 21.2 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|530549686|ref|YP_008430240.1| - 0.00011 21.7 0.1 0.00026 20.5 0.1 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Penicillinase_R PF03965.16 gi|530549686|ref|YP_008430240.1| - 0.00078 19.8 0.5 0.0016 18.7 0.5 1.5 1 0 0 1 1 1 1 Penicillinase repressor HTH_36 PF13730.6 gi|530549686|ref|YP_008430240.1| - 0.0014 18.5 0.0 0.003 17.5 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain GntR PF00392.21 gi|530549686|ref|YP_008430240.1| - 0.0056 16.3 0.1 0.011 15.4 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family Fe_dep_repress PF01325.19 gi|530549686|ref|YP_008430240.1| - 0.0061 16.7 1.6 0.013 15.7 0.1 2.3 3 0 0 3 3 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_DeoR PF08220.12 gi|530549686|ref|YP_008430240.1| - 0.0091 15.7 0.0 0.02 14.6 0.0 1.5 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain TFIIE_alpha PF02002.17 gi|530549686|ref|YP_008430240.1| - 0.0093 15.8 0.4 0.05 13.5 0.1 2.2 2 0 0 2 2 2 1 TFIIE alpha subunit DUF1670 PF07900.11 gi|530549686|ref|YP_008430240.1| - 0.018 14.4 0.0 0.03 13.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1670) OPT PF03169.15 gi|530549686|ref|YP_008430240.1| - 0.057 12.1 2.7 1.2 7.7 0.0 2.8 3 0 0 3 3 3 0 OPT oligopeptide transporter protein HTH_27 PF13463.6 gi|530549686|ref|YP_008430240.1| - 0.071 13.6 0.1 0.15 12.6 0.1 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain Rrf2 PF02082.20 gi|530549686|ref|YP_008430240.1| - 0.14 12.5 0.1 0.3 11.4 0.1 1.5 1 0 0 1 1 1 0 Transcriptional regulator Lactamase_B_3 PF13483.6 gi|530549687|ref|YP_008430241.1| - 5.4e-37 127.2 0.0 6.6e-37 126.9 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|530549687|ref|YP_008430241.1| - 3.8e-26 91.8 0.0 4.9e-26 91.5 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|530549687|ref|YP_008430241.1| - 7.7e-15 55.4 2.3 3.3e-14 53.4 1.1 2.2 2 1 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_5 PF14597.6 gi|530549687|ref|YP_008430241.1| - 0.021 14.3 0.0 0.029 13.9 0.0 1.2 1 0 0 1 1 1 0 Metallo-beta-lactamase superfamily Lactamase_B_6 PF16661.5 gi|530549687|ref|YP_008430241.1| - 0.13 11.6 0.0 0.22 10.9 0.0 1.3 1 0 0 1 1 1 0 Metallo-beta-lactamase superfamily domain AAA PF00004.29 gi|530549688|ref|YP_008430242.1| - 7.6e-44 149.3 0.0 1.5e-43 148.4 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|530549688|ref|YP_008430242.1| - 5.7e-15 54.9 0.4 1.1e-14 53.9 0.4 1.5 1 0 0 1 1 1 1 AAA+ lid domain Prot_ATP_ID_OB PF16450.5 gi|530549688|ref|YP_008430242.1| - 8.8e-12 44.8 0.0 1.9e-11 43.7 0.0 1.5 1 0 0 1 1 1 1 Proteasomal ATPase OB C-terminal domain AAA_5 PF07728.14 gi|530549688|ref|YP_008430242.1| - 9.2e-08 32.2 0.1 1.4e-06 28.4 0.1 2.7 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 gi|530549688|ref|YP_008430242.1| - 5e-07 30.3 0.1 0.00025 21.5 0.0 3.0 2 1 1 3 3 3 1 AAA ATPase domain Prot_ATP_OB_N PF17758.1 gi|530549688|ref|YP_008430242.1| - 8e-07 28.6 0.0 2.3e-06 27.2 0.0 1.7 1 0 0 1 1 1 1 Proteasomal ATPase OB N-terminal domain RuvB_N PF05496.12 gi|530549688|ref|YP_008430242.1| - 8.3e-07 28.9 0.0 1.8e-06 27.8 0.0 1.5 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_2 PF07724.14 gi|530549688|ref|YP_008430242.1| - 1.4e-06 28.5 0.0 5.3e-06 26.7 0.0 1.9 2 0 0 2 2 2 1 AAA domain (Cdc48 subfamily) AAA_22 PF13401.6 gi|530549688|ref|YP_008430242.1| - 0.00015 22.1 0.1 0.0074 16.6 0.1 2.6 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|530549688|ref|YP_008430242.1| - 0.00018 21.8 0.0 0.00048 20.4 0.0 1.8 1 0 0 1 1 1 1 AAA domain DUF815 PF05673.13 gi|530549688|ref|YP_008430242.1| - 0.00029 20.1 0.0 0.00052 19.2 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF815) RNA_helicase PF00910.22 gi|530549688|ref|YP_008430242.1| - 0.00058 20.2 0.0 0.0012 19.3 0.0 1.5 1 0 0 1 1 1 1 RNA helicase AAA_14 PF13173.6 gi|530549688|ref|YP_008430242.1| - 0.0018 18.3 0.0 0.0035 17.4 0.0 1.5 1 0 0 1 1 1 1 AAA domain ATPase PF06745.13 gi|530549688|ref|YP_008430242.1| - 0.0028 17.0 0.2 0.18 11.2 0.0 2.7 2 1 1 3 3 3 1 KaiC TIP49 PF06068.13 gi|530549688|ref|YP_008430242.1| - 0.0031 16.8 0.0 0.0055 16.0 0.0 1.3 1 0 0 1 1 1 1 TIP49 P-loop domain IstB_IS21 PF01695.17 gi|530549688|ref|YP_008430242.1| - 0.0033 17.2 0.0 0.0065 16.2 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_18 PF13238.6 gi|530549688|ref|YP_008430242.1| - 0.0047 17.5 0.5 0.01 16.4 0.0 1.9 2 0 0 2 2 1 1 AAA domain Mg_chelatase PF01078.21 gi|530549688|ref|YP_008430242.1| - 0.006 16.0 0.1 0.012 15.1 0.1 1.4 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_3 PF07726.11 gi|530549688|ref|YP_008430242.1| - 0.0061 16.4 0.0 0.012 15.4 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) ATPase_2 PF01637.18 gi|530549688|ref|YP_008430242.1| - 0.009 16.0 0.3 0.18 11.7 0.0 2.8 2 1 0 2 2 2 1 ATPase domain predominantly from Archaea AAA_17 PF13207.6 gi|530549688|ref|YP_008430242.1| - 0.0091 16.4 0.0 0.02 15.3 0.0 1.7 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.12 gi|530549688|ref|YP_008430242.1| - 0.019 14.2 0.0 0.037 13.3 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin AAA_25 PF13481.6 gi|530549688|ref|YP_008430242.1| - 0.023 14.3 0.6 0.098 12.2 0.0 2.3 3 0 0 3 3 3 0 AAA domain AAA_33 PF13671.6 gi|530549688|ref|YP_008430242.1| - 0.026 14.7 0.0 0.065 13.4 0.0 1.7 1 0 0 1 1 1 0 AAA domain Rad17 PF03215.15 gi|530549688|ref|YP_008430242.1| - 0.033 14.1 0.0 0.066 13.1 0.0 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain Parvo_NS1 PF01057.17 gi|530549688|ref|YP_008430242.1| - 0.037 13.1 0.0 0.062 12.4 0.0 1.3 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 AAA_24 PF13479.6 gi|530549688|ref|YP_008430242.1| - 0.042 13.6 0.0 0.098 12.4 0.0 1.6 1 1 0 1 1 1 0 AAA domain BAG PF02179.16 gi|530549688|ref|YP_008430242.1| - 0.046 14.2 0.4 0.23 11.9 0.0 2.3 2 0 0 2 2 2 0 BAG domain ABC_tran PF00005.27 gi|530549688|ref|YP_008430242.1| - 0.055 14.0 0.0 0.13 12.8 0.0 1.6 1 0 0 1 1 1 0 ABC transporter Sigma54_activ_2 PF14532.6 gi|530549688|ref|YP_008430242.1| - 0.057 13.5 0.0 0.19 11.8 0.0 1.9 1 1 0 1 1 1 0 Sigma-54 interaction domain AAA_7 PF12775.7 gi|530549688|ref|YP_008430242.1| - 0.058 12.9 0.0 0.12 11.9 0.0 1.5 1 0 0 1 1 1 0 P-loop containing dynein motor region TsaE PF02367.17 gi|530549688|ref|YP_008430242.1| - 0.065 13.2 0.0 0.12 12.4 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE NRBF2 PF08961.10 gi|530549688|ref|YP_008430242.1| - 0.071 12.7 0.2 0.13 11.8 0.2 1.4 1 0 0 1 1 1 0 Nuclear receptor-binding factor 2, autophagy regulator NACHT PF05729.12 gi|530549688|ref|YP_008430242.1| - 0.083 12.8 0.0 0.3 11.0 0.0 1.9 2 0 0 2 2 2 0 NACHT domain KAP_NTPase PF07693.14 gi|530549688|ref|YP_008430242.1| - 0.12 11.6 0.0 2.6 7.2 0.0 2.2 1 1 0 2 2 2 0 KAP family P-loop domain Sigma54_activat PF00158.26 gi|530549688|ref|YP_008430242.1| - 0.13 12.0 0.0 0.7 9.6 0.0 2.2 2 1 0 2 2 2 0 Sigma-54 interaction domain HALZ PF02183.18 gi|530549688|ref|YP_008430242.1| - 0.43 10.8 4.6 0.85 9.9 0.4 2.9 3 0 0 3 3 2 0 Homeobox associated leucine zipper CBS PF00571.28 gi|530547471|ref|YP_008430244.1| - 1.3e-21 76.8 1.5 3.2e-10 40.3 0.1 2.3 2 0 0 2 2 2 2 CBS domain HTH_3 PF01381.22 gi|530547471|ref|YP_008430244.1| - 8.4e-16 57.8 1.2 1.2e-15 57.3 0.6 1.6 2 0 0 2 2 2 1 Helix-turn-helix HTH_19 PF12844.7 gi|530547471|ref|YP_008430244.1| - 2.3e-12 46.7 0.3 5.7e-12 45.5 0.3 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|530547471|ref|YP_008430244.1| - 2.7e-11 43.6 0.0 4.5e-11 42.9 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.6 gi|530547471|ref|YP_008430244.1| - 4.6e-05 23.8 0.3 0.0001 22.7 0.1 1.6 2 0 0 2 2 2 1 Cro/C1-type HTH DNA-binding domain HTH_37 PF13744.6 gi|530547471|ref|YP_008430244.1| - 0.00019 21.3 0.0 0.00035 20.5 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MqsA_antitoxin PF15731.5 gi|530547471|ref|YP_008430244.1| - 0.0003 20.9 0.0 0.00077 19.6 0.0 1.6 1 0 0 1 1 1 1 Antitoxin component of bacterial toxin-antitoxin system, MqsA HTH_25 PF13413.6 gi|530547471|ref|YP_008430244.1| - 0.00051 19.9 0.1 0.00092 19.0 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Phage_TAC_12 PF12363.8 gi|530547471|ref|YP_008430244.1| - 0.049 14.1 0.0 0.1 13.0 0.0 1.6 1 0 0 1 1 1 0 Phage tail assembly chaperone protein, TAC DUF682 PF05081.12 gi|530549690|ref|YP_008430245.1| - 0.045 13.5 0.3 0.067 12.9 0.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF682) Phage_int_SAM_4 PF13495.6 gi|530549690|ref|YP_008430245.1| - 0.086 13.3 0.1 0.22 12.0 0.0 1.6 2 0 0 2 2 2 0 Phage integrase, N-terminal SAM-like domain FliG_N PF14842.6 gi|530549690|ref|YP_008430245.1| - 0.1 13.1 0.7 0.36 11.4 0.0 2.0 3 0 0 3 3 3 0 FliG N-terminal domain Radical_SAM PF04055.21 gi|530549692|ref|YP_008430247.1| - 5.3e-16 59.4 0.0 6.6e-16 59.1 0.0 1.1 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|530549692|ref|YP_008430247.1| - 1.2e-09 38.3 0.0 2.7e-09 37.2 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|530549692|ref|YP_008430247.1| - 4.4e-09 36.7 0.0 7.9e-09 35.9 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain DUF4924 PF16271.5 gi|530549692|ref|YP_008430247.1| - 0.049 13.7 0.2 0.11 12.4 0.1 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4924) Helicase_RecD PF05127.14 gi|530549693|ref|YP_008430248.1| - 7.1e-55 185.6 0.0 1.4e-54 184.7 0.0 1.5 1 0 0 1 1 1 1 Helicase GNAT_acetyltr_2 PF13718.6 gi|530549693|ref|YP_008430248.1| - 3.2e-48 164.1 0.0 2.2e-34 118.8 0.0 2.5 1 1 1 2 2 2 2 GNAT acetyltransferase 2 DUF1726 PF08351.11 gi|530549693|ref|YP_008430248.1| - 1.3e-34 118.0 0.0 4.9e-34 116.1 0.0 2.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1726) tRNA_bind_2 PF13725.6 gi|530549693|ref|YP_008430248.1| - 0.00015 21.6 0.3 0.0015 18.3 0.0 2.7 3 1 0 3 3 3 1 Possible tRNA binding domain Acetyltransf_1 PF00583.25 gi|530549693|ref|YP_008430248.1| - 0.011 16.0 0.1 0.036 14.3 0.1 2.1 1 1 0 1 1 1 0 Acetyltransferase (GNAT) family DEAD PF00270.29 gi|530549693|ref|YP_008430248.1| - 0.11 12.3 0.0 0.47 10.2 0.1 2.0 2 0 0 2 2 2 0 DEAD/DEAH box helicase SUIM_assoc PF16619.5 gi|530549693|ref|YP_008430248.1| - 0.21 11.7 0.0 0.44 10.7 0.0 1.5 1 0 0 1 1 1 0 Unstructured region C-term to UIM in Ataxin3 Peptidase_S9 PF00326.21 gi|530549694|ref|YP_008430249.1| - 6e-59 199.1 0.0 9.1e-59 198.5 0.0 1.3 1 0 0 1 1 1 1 Prolyl oligopeptidase family DPPIV_N PF00930.21 gi|530549694|ref|YP_008430249.1| - 1.7e-15 56.7 0.2 1e-09 37.7 0.0 3.9 2 2 2 4 4 4 2 Dipeptidyl peptidase IV (DPP IV) N-terminal region PD40 PF07676.12 gi|530549694|ref|YP_008430249.1| - 1.9e-14 53.1 1.2 7.6e-07 28.9 0.0 4.2 4 0 0 4 4 4 3 WD40-like Beta Propeller Repeat Peptidase_S15 PF02129.18 gi|530549694|ref|YP_008430249.1| - 1.1e-09 38.3 0.0 3.9e-07 29.9 0.0 2.2 1 1 1 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) AXE1 PF05448.12 gi|530549694|ref|YP_008430249.1| - 2.3e-08 33.1 0.2 2.5e-06 26.4 0.2 2.2 1 1 0 1 1 1 1 Acetyl xylan esterase (AXE1) DUF5050 PF16472.5 gi|530549694|ref|YP_008430249.1| - 4e-06 26.3 0.0 0.012 14.9 0.0 2.6 2 1 0 2 2 2 2 Domain of unknown function (DUF5050) SGL PF08450.12 gi|530549694|ref|YP_008430249.1| - 0.0006 19.5 0.1 0.083 12.5 0.0 3.2 1 1 2 3 3 3 1 SMP-30/Gluconolactonase/LRE-like region DLH PF01738.18 gi|530549694|ref|YP_008430249.1| - 0.00074 19.1 0.0 0.003 17.2 0.0 1.8 1 1 0 1 1 1 1 Dienelactone hydrolase family Abhydrolase_1 PF00561.20 gi|530549694|ref|YP_008430249.1| - 0.0013 18.4 0.2 0.0036 17.0 0.1 1.7 1 1 1 2 2 2 1 alpha/beta hydrolase fold DUF2920 PF11144.8 gi|530549694|ref|YP_008430249.1| - 0.0019 17.4 0.0 0.051 12.8 0.0 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF2920) Hydrolase_4 PF12146.8 gi|530549694|ref|YP_008430249.1| - 0.078 12.2 0.2 1.6 8.0 0.0 2.2 2 0 0 2 2 2 0 Serine aminopeptidase, S33 UPRTase PF14681.6 gi|530549695|ref|YP_008430250.1| - 2.8e-12 46.5 0.0 8.2e-12 45.0 0.0 1.6 1 1 0 1 1 1 1 Uracil phosphoribosyltransferase DUF4062 PF13271.6 gi|530549696|ref|YP_008430251.1| - 7.5e-13 48.7 0.0 1.9e-12 47.4 0.0 1.7 1 1 0 1 1 1 1 Domain of unknown function (DUF4062) DUF1931 PF09123.11 gi|530549697|ref|YP_008430252.1| - 3.4e-45 153.6 1.6 3.8e-45 153.4 1.6 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1931) PEPcase_2 PF14010.6 gi|530549698|ref|YP_008430253.1| - 2.7e-177 590.2 1.6 3.1e-177 590.0 1.6 1.0 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxylase HpcH_HpaI PF03328.14 gi|530549698|ref|YP_008430253.1| - 0.0043 16.2 0.0 0.0095 15.1 0.0 1.5 2 0 0 2 2 2 1 HpcH/HpaI aldolase/citrate lyase family DUF2139 PF09910.9 gi|530549699|ref|YP_008430254.1| - 1.4e-155 517.6 0.1 1.7e-155 517.4 0.1 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2139) DUF3213 PF11491.8 gi|530549700|ref|YP_008430255.1| - 1e-31 108.9 0.2 1.2e-31 108.8 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3213) Intein_splicing PF14890.6 gi|530549701|ref|YP_008430256.1| - 8.3e-24 84.0 0.2 2.2e-23 82.7 0.2 1.7 1 0 0 1 1 1 1 Intein splicing domain Radical_SAM PF04055.21 gi|530549701|ref|YP_008430256.1| - 2.5e-17 63.8 6.6 3.4e-14 53.6 0.0 3.3 3 0 0 3 3 3 2 Radical SAM superfamily LAGLIDADG_3 PF14528.6 gi|530549701|ref|YP_008430256.1| - 1.6e-12 47.6 0.1 9.2e-10 38.7 0.0 2.6 2 0 0 2 2 2 2 LAGLIDADG-like domain Fer4_12 PF13353.6 gi|530549701|ref|YP_008430256.1| - 2.2e-05 24.8 0.2 0.043 14.1 0.0 2.9 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|530549701|ref|YP_008430256.1| - 0.024 14.8 5.5 0.48 10.6 0.0 3.3 3 1 1 4 4 4 0 4Fe-4S single cluster domain DDE_Tnp_IS66 PF03050.14 gi|530549703|ref|YP_008430258.1| - 0.0069 15.9 0.0 0.0076 15.7 0.0 1.1 1 0 0 1 1 1 1 Transposase IS66 family TINF2_N PF14973.6 gi|530549704|ref|YP_008430259.1| - 0.026 14.9 0.8 0.095 13.1 0.8 2.0 1 1 0 1 1 1 0 TERF1-interacting nuclear factor 2 N-terminus DUF4355 PF14265.6 gi|530549704|ref|YP_008430259.1| - 0.035 14.4 0.0 0.046 14.0 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4355) Glyco_hydro_46 PF01374.18 gi|530549704|ref|YP_008430259.1| - 0.035 13.7 0.0 0.041 13.5 0.0 1.2 1 0 0 1 1 1 0 Glycosyl hydrolase family 46 MecA_N PF05223.11 gi|530549704|ref|YP_008430259.1| - 0.044 14.1 0.1 7 7.0 0.0 2.3 2 1 0 2 2 2 0 NTF2-like N-terminal transpeptidase domain UDG PF03167.19 gi|530549705|ref|YP_008430260.1| - 9.4e-45 152.4 0.0 1.2e-44 152.0 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily Na_H_antiporter PF03553.14 gi|530549706|ref|YP_008430261.1| - 4e-75 252.9 26.4 4e-75 252.9 26.4 2.0 2 0 0 2 2 2 1 Na+/H+ antiporter family Amidinotransf PF02274.17 gi|530549707|ref|YP_008430262.1| - 2.3e-31 109.1 0.0 3.4e-29 102.0 0.0 2.3 1 1 0 1 1 1 1 Amidinotransferase UPF0180 PF03698.13 gi|530549707|ref|YP_008430262.1| - 0.027 14.6 0.0 1.7 8.8 0.0 2.9 3 0 0 3 3 3 0 Uncharacterised protein family (UPF0180) PAD_porph PF04371.15 gi|530549707|ref|YP_008430262.1| - 0.069 12.4 0.0 3 7.0 0.0 2.4 2 1 1 3 3 3 0 Porphyromonas-type peptidyl-arginine deiminase Radical_SAM PF04055.21 gi|530549707|ref|YP_008430262.1| - 0.11 12.8 0.0 0.23 11.8 0.0 1.4 1 0 0 1 1 1 0 Radical SAM superfamily ComA PF02679.15 gi|530549707|ref|YP_008430262.1| - 0.12 11.8 0.1 0.34 10.4 0.1 1.7 2 0 0 2 2 2 0 (2R)-phospho-3-sulfolactate synthase (ComA) GHMP_kinases_N PF00288.26 gi|530549708|ref|YP_008430263.1| - 5.9e-07 29.6 0.1 1.6e-06 28.2 0.1 1.8 1 0 0 1 1 1 1 GHMP kinases N terminal domain Amino_oxidase PF01593.24 gi|530549708|ref|YP_008430263.1| - 0.018 14.4 0.0 0.029 13.7 0.0 1.2 1 0 0 1 1 1 0 Flavin containing amine oxidoreductase Sda PF08970.10 gi|530549708|ref|YP_008430263.1| - 0.14 11.9 0.1 0.37 10.6 0.1 1.6 1 0 0 1 1 1 0 Sporulation inhibitor A UCR_UQCRX_QCR9 PF05365.12 gi|530549709|ref|YP_008430264.1| - 0.75 9.8 2.5 22 5.1 0.4 2.2 2 0 0 2 2 2 0 Ubiquinol-cytochrome C reductase, UQCRX/QCR9 like DNA_ligase_A_M PF01068.21 gi|530549710|ref|YP_008430265.1| - 6.5e-62 208.8 0.6 1.3e-61 207.8 0.6 1.5 1 0 0 1 1 1 1 ATP dependent DNA ligase domain DNA_ligase_A_N PF04675.14 gi|530549710|ref|YP_008430265.1| - 9.2e-41 140.0 0.5 1.7e-40 139.2 0.5 1.5 1 0 0 1 1 1 1 DNA ligase N terminus DNA_ligase_A_C PF04679.15 gi|530549710|ref|YP_008430265.1| - 8.3e-23 80.9 0.0 5.3e-22 78.3 0.0 2.4 2 0 0 2 2 2 1 ATP dependent DNA ligase C terminal region RNA_ligase PF09414.10 gi|530549710|ref|YP_008430265.1| - 1.2e-06 28.9 0.8 2e-06 28.2 0.8 1.4 1 0 0 1 1 1 1 RNA ligase DNA_ligase_OB_2 PF14743.6 gi|530549710|ref|YP_008430265.1| - 0.028 14.5 0.0 0.1 12.6 0.0 2.0 1 1 0 1 1 1 0 DNA ligase OB-like domain FeS_assembly_P PF01883.19 gi|530549710|ref|YP_008430265.1| - 0.04 14.1 0.7 1 9.6 0.0 2.8 3 0 0 3 3 3 0 Iron-sulfur cluster assembly protein TPR_1 PF00515.28 gi|530549710|ref|YP_008430265.1| - 0.056 13.3 0.4 0.52 10.2 0.0 2.6 3 0 0 3 3 3 0 Tetratricopeptide repeat Sel1 PF08238.12 gi|530549710|ref|YP_008430265.1| - 0.059 14.1 0.0 0.16 12.7 0.0 1.7 1 0 0 1 1 1 0 Sel1 repeat TPR_12 PF13424.6 gi|530549710|ref|YP_008430265.1| - 0.059 13.7 0.4 9.1 6.7 0.0 2.8 3 0 0 3 3 3 0 Tetratricopeptide repeat Flavin_Reduct PF01613.18 gi|530549711|ref|YP_008430266.1| - 2.9e-17 63.1 0.0 3.8e-17 62.8 0.0 1.1 1 0 0 1 1 1 1 Flavin reductase like domain PIG-H PF10181.9 gi|530549711|ref|YP_008430266.1| - 0.085 12.7 0.0 0.26 11.2 0.0 1.8 1 1 0 1 1 1 0 GPI-GlcNAc transferase complex, PIG-H component HAD_2 PF13419.6 gi|530549713|ref|YP_008430268.1| - 3e-23 82.8 0.0 4.2e-23 82.4 0.0 1.2 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|530549713|ref|YP_008430268.1| - 1.1e-12 48.7 0.1 1.5e-11 45.0 0.1 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|530549713|ref|YP_008430268.1| - 1.5e-10 41.0 0.1 3.2e-10 39.9 0.1 1.5 1 1 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.7 gi|530549713|ref|YP_008430268.1| - 4.7e-06 27.1 0.1 6e-06 26.8 0.1 1.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase NIF PF03031.18 gi|530549713|ref|YP_008430268.1| - 0.064 13.0 0.0 1.1 9.0 0.0 2.1 2 0 0 2 2 2 0 NLI interacting factor-like phosphatase PALP PF00291.25 gi|530549714|ref|YP_008430269.1| - 1.5e-84 283.9 0.0 1.6e-84 283.8 0.0 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme GatB_Yqey PF02637.18 gi|530549714|ref|YP_008430269.1| - 0.048 13.5 0.1 0.1 12.5 0.1 1.6 1 0 0 1 1 1 0 GatB domain Lactamase_B_3 PF13483.6 gi|530549714|ref|YP_008430269.1| - 0.19 11.6 0.0 0.37 10.7 0.0 1.4 1 0 0 1 1 1 0 Beta-lactamase superfamily domain Aminotran_1_2 PF00155.21 gi|530549715|ref|YP_008430270.1| - 8.7e-45 153.5 0.0 1.1e-44 153.2 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.19 gi|530549715|ref|YP_008430270.1| - 2.2e-07 30.2 0.0 3.8e-07 29.4 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|530549715|ref|YP_008430270.1| - 9.2e-06 24.4 0.0 1.4e-05 23.8 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Alliinase_C PF04864.13 gi|530549715|ref|YP_008430270.1| - 0.002 17.1 0.0 0.0029 16.5 0.0 1.2 1 0 0 1 1 1 1 Allinase RMMBL PF07521.12 gi|530549715|ref|YP_008430270.1| - 0.023 14.6 0.0 0.12 12.3 0.0 2.2 2 0 0 2 2 2 0 Zn-dependent metallo-hydrolase RNA specificity domain SHMT PF00464.19 gi|530549715|ref|YP_008430270.1| - 0.15 10.6 0.0 0.42 9.1 0.0 1.7 1 1 0 1 1 1 0 Serine hydroxymethyltransferase DUF5603 PF18231.1 gi|530549716|ref|YP_008430271.1| - 3.9e-48 162.1 3.8 3.9e-48 162.1 3.8 1.6 2 0 0 2 2 2 1 Domain of unknown function (DUF5603) ParBc PF02195.18 gi|530549716|ref|YP_008430271.1| - 3.3e-09 36.9 0.0 7.2e-09 35.8 0.0 1.6 1 0 0 1 1 1 1 ParB-like nuclease domain DUF1015 PF06245.11 gi|530549716|ref|YP_008430271.1| - 2.7e-05 23.2 0.0 0.039 12.8 0.1 2.5 2 1 0 2 2 2 2 Protein of unknown function (DUF1015) Proteasome PF00227.26 gi|530549717|ref|YP_008430272.1| - 2e-55 187.2 0.9 2e-55 187.2 0.9 1.3 2 0 0 2 2 2 1 Proteasome subunit KH_7 PF17214.3 gi|530549718|ref|YP_008430273.1| - 1.7e-30 104.8 8.6 2.5e-28 97.8 2.3 2.7 2 0 0 2 2 2 2 KH domain Beta-Casp PF10996.8 gi|530549718|ref|YP_008430273.1| - 3.5e-26 91.7 0.0 7e-26 90.7 0.0 1.5 1 0 0 1 1 1 1 Beta-Casp domain RMMBL PF07521.12 gi|530549718|ref|YP_008430273.1| - 7.3e-20 70.7 0.1 4.3e-19 68.2 0.0 2.3 2 0 0 2 2 2 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B_6 PF16661.5 gi|530549718|ref|YP_008430273.1| - 1.7e-09 37.4 0.0 3.1e-09 36.5 0.0 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|530549718|ref|YP_008430273.1| - 1.3e-07 31.8 3.0 2.7e-06 27.5 3.0 2.6 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|530549718|ref|YP_008430273.1| - 8.9e-06 25.4 0.1 2.2e-05 24.0 0.1 1.6 1 0 0 1 1 1 1 Beta-lactamase superfamily domain KH_1 PF00013.29 gi|530549718|ref|YP_008430273.1| - 6.2e-05 22.7 0.1 0.01 15.7 0.1 2.7 2 0 0 2 2 2 1 KH domain KH_2 PF07650.17 gi|530549718|ref|YP_008430273.1| - 0.00065 19.5 10.6 0.00097 18.9 1.0 3.1 2 1 1 3 3 3 2 KH domain KH_4 PF13083.6 gi|530549718|ref|YP_008430273.1| - 0.00073 19.4 1.1 0.0044 16.9 0.1 2.6 2 0 0 2 2 2 1 KH domain Lactamase_B_3 PF13483.6 gi|530549718|ref|YP_008430273.1| - 0.065 13.1 0.0 0.17 11.8 0.0 1.6 1 0 0 1 1 1 0 Beta-lactamase superfamily domain RPEL PF02755.15 gi|530549718|ref|YP_008430273.1| - 0.071 12.8 0.6 0.25 11.1 0.0 2.2 2 0 0 2 2 2 0 RPEL repeat PALP PF00291.25 gi|530549719|ref|YP_008430274.1| - 1.3e-21 77.3 0.0 1.6e-21 77.0 0.0 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme PALP PF00291.25 gi|530549720|ref|YP_008430275.1| - 1.6e-35 123.0 0.0 2.2e-35 122.5 0.0 1.2 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme PadR PF03551.14 gi|530549720|ref|YP_008430275.1| - 3.6e-11 42.8 5.6 3.2e-10 39.8 3.7 2.5 2 0 0 2 2 2 1 Transcriptional regulator PadR-like family HTH_5 PF01022.20 gi|530549720|ref|YP_008430275.1| - 1.8e-05 24.5 0.0 4e-05 23.4 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family DUF4364 PF14277.6 gi|530549720|ref|YP_008430275.1| - 3.5e-05 23.6 0.3 0.00018 21.3 0.1 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF4364) HTH_27 PF13463.6 gi|530549720|ref|YP_008430275.1| - 0.00012 22.5 0.1 0.0054 17.2 0.1 2.4 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_45 PF14947.6 gi|530549720|ref|YP_008430275.1| - 0.0003 20.7 1.5 0.00057 19.8 0.4 2.1 3 0 0 3 3 3 1 Winged helix-turn-helix DUF505 PF04458.12 gi|530549720|ref|YP_008430275.1| - 0.00077 18.0 0.5 0.0012 17.3 0.5 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF505) TrmB PF01978.19 gi|530549720|ref|YP_008430275.1| - 0.0013 18.6 0.7 0.011 15.6 0.5 2.2 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB DUF2250 PF10007.9 gi|530549720|ref|YP_008430275.1| - 0.0015 18.6 2.8 0.15 12.2 0.4 2.6 1 1 1 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_20 PF12840.7 gi|530549720|ref|YP_008430275.1| - 0.0021 18.1 0.0 0.05 13.7 0.0 2.6 3 0 0 3 3 3 1 Helix-turn-helix domain SMC_ScpB PF04079.16 gi|530549720|ref|YP_008430275.1| - 0.0044 16.7 0.0 0.28 10.8 0.0 2.4 2 0 0 2 2 2 1 Segregation and condensation complex subunit ScpB Cdc6_C PF09079.11 gi|530549720|ref|YP_008430275.1| - 0.0091 15.9 0.0 0.018 15.0 0.0 1.5 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain Replic_Relax PF13814.6 gi|530549720|ref|YP_008430275.1| - 0.016 15.2 0.1 0.024 14.7 0.1 1.3 1 0 0 1 1 1 0 Replication-relaxation HxlR PF01638.17 gi|530549720|ref|YP_008430275.1| - 0.017 15.0 0.3 0.031 14.1 0.3 1.5 1 0 0 1 1 1 0 HxlR-like helix-turn-helix ACP_syn_III_C PF08541.10 gi|530549720|ref|YP_008430275.1| - 0.029 14.6 0.0 0.056 13.6 0.0 1.4 1 0 0 1 1 1 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HTH_12 PF08461.10 gi|530549720|ref|YP_008430275.1| - 0.039 13.9 1.8 0.11 12.4 1.8 1.9 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain DUF1495 PF07381.11 gi|530549720|ref|YP_008430275.1| - 0.086 12.7 0.1 0.21 11.5 0.1 1.7 1 0 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) HTH_24 PF13412.6 gi|530549720|ref|YP_008430275.1| - 0.093 12.3 0.1 2.7 7.6 0.0 2.4 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding Rab5ip PF07019.12 gi|530549721|ref|YP_008430276.1| - 4.3 8.0 11.8 45 4.7 2.7 2.1 1 1 1 2 2 2 0 Rab5-interacting protein (Rab5ip) Rib_5-P_isom_A PF06026.14 gi|530549722|ref|YP_008430277.1| - 6.1e-67 224.5 0.1 7.6e-67 224.2 0.1 1.1 1 0 0 1 1 1 1 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DeoRC PF00455.22 gi|530549722|ref|YP_008430277.1| - 3.8e-07 30.2 0.1 5.7e-05 23.1 0.0 2.2 2 0 0 2 2 2 2 DeoR C terminal sensor domain Sugar-bind PF04198.13 gi|530549722|ref|YP_008430277.1| - 0.14 11.3 0.1 0.23 10.6 0.1 1.3 1 0 0 1 1 1 0 Putative sugar-binding domain DDE_Tnp_IS66 PF03050.14 gi|530549723|ref|YP_008430278.1| - 0.0042 16.6 0.0 0.0045 16.5 0.0 1.1 1 0 0 1 1 1 1 Transposase IS66 family DEAD PF00270.29 gi|530549725|ref|YP_008430280.1| - 4.2e-26 91.8 0.0 1e-25 90.5 0.0 1.7 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|530549725|ref|YP_008430280.1| - 4.3e-13 49.6 0.0 8.8e-11 42.1 0.0 3.6 2 1 0 2 2 2 1 Helicase conserved C-terminal domain HHH_5 PF14520.6 gi|530549725|ref|YP_008430280.1| - 2.4e-11 44.0 0.1 1.4e-10 41.6 0.1 2.4 1 0 0 1 1 1 1 Helix-hairpin-helix domain ResIII PF04851.15 gi|530549725|ref|YP_008430280.1| - 4.6e-11 43.0 0.0 1.8e-10 41.1 0.0 2.0 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit HHH_2 PF12826.7 gi|530549725|ref|YP_008430280.1| - 1.5e-05 25.0 0.0 5.8e-05 23.1 0.0 2.0 1 0 0 1 1 1 1 Helix-hairpin-helix motif DNA_pol_lambd_f PF10391.9 gi|530549725|ref|YP_008430280.1| - 2.2e-05 24.2 0.0 0.0001 22.0 0.0 2.2 2 0 0 2 2 2 1 Fingers domain of DNA polymerase lambda HHH PF00633.23 gi|530549725|ref|YP_008430280.1| - 0.00014 21.5 0.1 0.19 11.7 0.1 3.1 2 0 0 2 2 2 2 Helix-hairpin-helix motif Cdd1 PF11731.8 gi|530549725|ref|YP_008430280.1| - 0.00015 21.9 0.0 0.00038 20.6 0.0 1.7 1 0 0 1 1 1 1 Pathogenicity locus RNA_pol_A_CTD PF03118.15 gi|530549725|ref|YP_008430280.1| - 0.0043 16.8 0.1 0.42 10.4 0.0 2.6 2 0 0 2 2 2 1 Bacterial RNA polymerase, alpha chain C terminal domain MAAL_N PF05034.13 gi|530549725|ref|YP_008430280.1| - 0.18 11.5 0.1 8.2 6.0 0.0 2.6 3 0 0 3 3 3 0 Methylaspartate ammonia-lyase N-terminus AsnC_trans_reg PF01037.21 gi|530549727|ref|YP_008430282.1| - 1e-15 57.5 0.2 1.1e-15 57.3 0.2 1.0 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain NapD PF03927.13 gi|530549727|ref|YP_008430282.1| - 0.00011 22.2 0.9 0.00021 21.3 0.9 1.4 1 1 0 1 1 1 1 NapD protein ACT_4 PF13291.6 gi|530549727|ref|YP_008430282.1| - 0.02 15.5 0.8 3 8.5 0.1 2.2 2 0 0 2 2 2 0 ACT domain SRP19 PF01922.17 gi|530549728|ref|YP_008430283.1| - 5.9e-14 52.8 0.1 7.3e-14 52.5 0.1 1.1 1 0 0 1 1 1 1 SRP19 protein SpoU_sub_bind PF08032.12 gi|530549728|ref|YP_008430283.1| - 0.02 15.2 0.2 0.05 13.9 0.0 1.7 2 0 0 2 2 2 0 RNA 2'-O ribose methyltransferase substrate binding DUF257 PF03192.13 gi|530549729|ref|YP_008430284.1| - 2.9e-09 37.0 0.0 4.9e-09 36.3 0.0 1.4 1 1 0 1 1 1 1 Pyrococcus protein of unknown function, DUF257 GCD14 PF08704.10 gi|530549730|ref|YP_008430285.1| - 6.9e-29 101.2 0.0 2.5e-26 92.8 0.0 2.1 1 1 1 2 2 2 2 tRNA methyltransferase complex GCD14 subunit Methyltransf_31 PF13847.6 gi|530549730|ref|YP_008430285.1| - 3.8e-10 39.8 0.0 5.1e-10 39.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|530549730|ref|YP_008430285.1| - 8.5e-10 38.7 0.0 1.1e-09 38.3 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) GCD14_N PF14801.6 gi|530549730|ref|YP_008430285.1| - 7.4e-09 35.3 0.2 1.6e-08 34.2 0.2 1.6 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit N-term Methyltransf_25 PF13649.6 gi|530549730|ref|YP_008430285.1| - 3.5e-06 27.6 0.0 6.2e-06 26.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|530549730|ref|YP_008430285.1| - 0.00015 22.4 0.0 0.00031 21.3 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|530549730|ref|YP_008430285.1| - 0.00097 18.5 0.0 0.0015 17.9 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|530549730|ref|YP_008430285.1| - 0.0011 19.6 0.0 0.0022 18.7 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 gi|530549730|ref|YP_008430285.1| - 0.0014 17.7 0.0 0.0021 17.2 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_3 PF01596.17 gi|530549730|ref|YP_008430285.1| - 0.0027 16.9 0.0 0.0047 16.1 0.0 1.4 1 0 0 1 1 1 1 O-methyltransferase Tenui_NCP PF04876.12 gi|530549730|ref|YP_008430285.1| - 0.004 16.8 0.1 0.0082 15.7 0.1 1.5 2 0 0 2 2 2 1 Tenuivirus major non-capsid protein Methyltransf_4 PF02390.17 gi|530549730|ref|YP_008430285.1| - 0.0054 16.2 0.0 0.16 11.4 0.0 2.2 1 1 1 2 2 2 1 Putative methyltransferase Methyltransf_24 PF13578.6 gi|530549730|ref|YP_008430285.1| - 0.0099 16.9 0.0 0.019 16.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|530549730|ref|YP_008430285.1| - 0.01 15.4 0.0 0.044 13.3 0.0 2.0 2 1 0 2 2 2 0 Methyltransferase small domain PSK PF06404.12 gi|530549730|ref|YP_008430285.1| - 0.019 16.0 0.2 0.032 15.2 0.2 1.3 1 0 0 1 1 1 0 Phytosulfokine precursor protein (PSK) Methyltr_RsmB-F PF01189.17 gi|530549730|ref|YP_008430285.1| - 0.026 14.2 0.0 0.22 11.2 0.0 2.0 1 1 1 2 2 2 0 16S rRNA methyltransferase RsmB/F UPF0020 PF01170.18 gi|530549730|ref|YP_008430285.1| - 0.058 13.1 0.1 1.5 8.5 0.1 2.5 1 1 1 2 2 2 0 Putative RNA methylase family UPF0020 Methyltransf_23 PF13489.6 gi|530549730|ref|YP_008430285.1| - 0.074 12.9 0.0 0.17 11.7 0.0 1.6 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_18 PF12847.7 gi|530549730|ref|YP_008430285.1| - 0.14 12.1 0.0 0.24 11.3 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain DHODB_Fe-S_bind PF10418.9 gi|530549731|ref|YP_008430286.1| - 3.7e-12 45.8 3.2 5.8e-12 45.2 3.2 1.3 1 0 0 1 1 1 1 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B Peptidase_C15 PF01470.17 gi|530549731|ref|YP_008430286.1| - 0.09 12.9 0.0 0.17 12.0 0.0 1.4 1 0 0 1 1 1 0 Pyroglutamyl peptidase Fer2_3 PF13085.6 gi|530549731|ref|YP_008430286.1| - 0.1 12.6 0.1 0.2 11.7 0.1 1.4 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain Fer4_20 PF14691.6 gi|530549732|ref|YP_008430287.1| - 7.6e-41 138.4 1.0 1.2e-40 137.8 1.0 1.3 1 0 0 1 1 1 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Pyr_redox_2 PF07992.14 gi|530549732|ref|YP_008430287.1| - 1.3e-37 129.6 2.6 2.2e-37 128.9 2.6 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|530549732|ref|YP_008430287.1| - 8.6e-16 58.0 4.3 5.2e-10 39.1 0.4 3.1 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|530549732|ref|YP_008430287.1| - 1.3e-14 54.5 8.0 1.4e-07 31.9 0.4 3.7 3 1 0 3 3 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|530549732|ref|YP_008430287.1| - 2.5e-12 46.8 1.9 5.8e-10 39.3 0.1 2.4 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain AlaDh_PNT_C PF01262.21 gi|530549732|ref|YP_008430287.1| - 1.4e-09 37.6 0.2 2.3e-05 23.8 0.1 2.4 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain HI0933_like PF03486.14 gi|530549732|ref|YP_008430287.1| - 6.3e-09 35.0 5.4 3.2e-07 29.4 0.3 2.8 3 0 0 3 3 3 2 HI0933-like protein FAD_binding_2 PF00890.24 gi|530549732|ref|YP_008430287.1| - 1.9e-08 33.8 5.1 2.6e-06 26.8 0.0 3.2 2 1 1 3 3 3 2 FAD binding domain Thi4 PF01946.17 gi|530549732|ref|YP_008430287.1| - 5.7e-08 32.3 0.1 1.7e-06 27.4 0.0 2.2 2 0 0 2 2 2 1 Thi4 family GIDA PF01134.22 gi|530549732|ref|YP_008430287.1| - 1.3e-07 31.1 3.8 0.00021 20.5 0.0 2.7 3 0 0 3 3 3 2 Glucose inhibited division protein A Shikimate_DH PF01488.20 gi|530549732|ref|YP_008430287.1| - 3.4e-07 30.4 0.5 0.43 10.6 0.1 3.4 3 0 0 3 3 3 2 Shikimate / quinate 5-dehydrogenase FAD_binding_3 PF01494.19 gi|530549732|ref|YP_008430287.1| - 8.9e-07 28.5 0.4 6.6e-05 22.3 0.0 2.2 2 0 0 2 2 2 1 FAD binding domain FAD_oxidored PF12831.7 gi|530549732|ref|YP_008430287.1| - 1.9e-06 27.5 1.4 0.0013 18.2 0.0 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase FMO-like PF00743.19 gi|530549732|ref|YP_008430287.1| - 2e-06 26.5 0.0 0.0011 17.4 0.0 2.1 2 0 0 2 2 2 2 Flavin-binding monooxygenase-like PALP PF00291.25 gi|530549732|ref|YP_008430287.1| - 4.9e-06 26.2 0.0 0.025 14.0 0.0 2.3 2 0 0 2 2 2 2 Pyridoxal-phosphate dependent enzyme DAO PF01266.24 gi|530549732|ref|YP_008430287.1| - 5.5e-06 26.2 5.1 4.3e-05 23.3 0.3 3.5 3 1 1 4 4 4 1 FAD dependent oxidoreductase NAD_binding_7 PF13241.6 gi|530549732|ref|YP_008430287.1| - 6.4e-06 26.6 2.3 0.049 14.1 0.8 2.9 2 1 0 2 2 2 2 Putative NAD(P)-binding YjeF_N PF03853.15 gi|530549732|ref|YP_008430287.1| - 5.4e-05 23.2 0.1 0.19 11.6 0.0 2.6 3 0 0 3 3 2 2 YjeF-related protein N-terminus XdhC_C PF13478.6 gi|530549732|ref|YP_008430287.1| - 5.9e-05 23.6 0.0 0.05 14.1 0.0 2.4 2 0 0 2 2 2 1 XdhC Rossmann domain IlvN PF07991.12 gi|530549732|ref|YP_008430287.1| - 6.5e-05 22.6 0.1 0.11 12.0 0.1 2.5 2 0 0 2 2 2 2 Acetohydroxy acid isomeroreductase, NADPH-binding domain 2-Hacid_dh_C PF02826.19 gi|530549732|ref|YP_008430287.1| - 9e-05 21.9 0.1 0.046 13.1 0.0 2.8 3 0 0 3 3 3 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Amino_oxidase PF01593.24 gi|530549732|ref|YP_008430287.1| - 9.2e-05 21.9 1.0 0.0027 17.1 0.0 2.8 2 1 1 3 3 3 1 Flavin containing amine oxidoreductase NAD_binding_9 PF13454.6 gi|530549732|ref|YP_008430287.1| - 0.00017 21.6 0.4 0.0088 16.0 0.1 2.5 2 0 0 2 2 2 1 FAD-NAD(P)-binding 3HCDH_N PF02737.18 gi|530549732|ref|YP_008430287.1| - 0.00027 20.9 0.3 0.021 14.7 0.0 2.4 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|530549732|ref|YP_008430287.1| - 0.0009 19.8 3.4 0.6 10.7 0.8 3.4 3 1 0 3 3 2 1 NADP oxidoreductase coenzyme F420-dependent K_oxygenase PF13434.6 gi|530549732|ref|YP_008430287.1| - 0.0012 18.0 0.0 0.64 9.1 0.0 2.9 3 0 0 3 3 3 1 L-lysine 6-monooxygenase (NADPH-requiring) Lycopene_cycl PF05834.12 gi|530549732|ref|YP_008430287.1| - 0.0031 16.6 0.2 0.0031 16.6 0.2 2.0 3 0 0 3 3 3 1 Lycopene cyclase protein Fer4_10 PF13237.6 gi|530549732|ref|YP_008430287.1| - 0.0059 16.7 7.4 0.011 15.8 7.4 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain UDPG_MGDP_dh_N PF03721.14 gi|530549732|ref|YP_008430287.1| - 0.019 14.6 0.3 0.1 12.2 0.1 2.4 2 1 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain PrpR_N PF06506.11 gi|530549732|ref|YP_008430287.1| - 0.026 14.1 0.2 0.57 9.7 0.0 3.0 3 0 0 3 3 3 0 Propionate catabolism activator TrkA_N PF02254.18 gi|530549732|ref|YP_008430287.1| - 0.029 14.6 1.6 2.2 8.6 0.0 3.2 4 0 0 4 4 2 0 TrkA-N domain TrkA_C PF02080.21 gi|530549732|ref|YP_008430287.1| - 0.036 13.9 0.0 11 6.0 0.0 2.8 2 0 0 2 2 2 0 TrkA-C domain Glyco_transf_4 PF13439.6 gi|530549732|ref|YP_008430287.1| - 0.037 14.0 0.1 5.7 6.9 0.1 2.3 2 0 0 2 2 2 0 Glycosyltransferase Family 4 ApbA PF02558.16 gi|530549732|ref|YP_008430287.1| - 0.093 12.4 0.3 0.3 10.7 0.1 2.0 2 0 0 2 2 1 0 Ketopantoate reductase PanE/ApbA AdoHcyase_NAD PF00670.21 gi|530549732|ref|YP_008430287.1| - 0.1 12.6 1.7 6.7 6.7 0.1 2.9 3 0 0 3 3 3 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Hydrolase_6 PF13344.6 gi|530549732|ref|YP_008430287.1| - 0.16 12.1 0.0 1.6 8.9 0.0 2.4 2 0 0 2 2 2 0 Haloacid dehalogenase-like hydrolase OTCace PF00185.24 gi|530549732|ref|YP_008430287.1| - 0.17 12.0 0.0 0.34 11.0 0.0 1.5 1 0 0 1 1 1 0 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Fer4_2 PF12797.7 gi|530549732|ref|YP_008430287.1| - 1 9.6 7.7 0.14 12.3 3.2 2.0 2 0 0 2 2 1 0 4Fe-4S binding domain Methyltransf_25 PF13649.6 gi|530549733|ref|YP_008430288.1| - 1.5e-26 92.9 0.0 3.1e-26 91.9 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|530549733|ref|YP_008430288.1| - 4e-26 91.6 0.0 5.4e-26 91.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|530549733|ref|YP_008430288.1| - 7.9e-26 90.6 0.1 1.4e-25 89.8 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|530549733|ref|YP_008430288.1| - 1.3e-18 67.2 0.0 2.1e-18 66.5 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.6 gi|530549733|ref|YP_008430288.1| - 7.3e-16 58.4 0.0 1.2e-15 57.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|530549733|ref|YP_008430288.1| - 2.2e-13 50.8 0.0 4e-13 49.9 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.12 gi|530549733|ref|YP_008430288.1| - 4.5e-08 32.9 0.0 5.6e-08 32.6 0.0 1.3 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW CMAS PF02353.20 gi|530549733|ref|YP_008430288.1| - 6.1e-07 29.0 0.0 8.4e-07 28.6 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase PCMT PF01135.19 gi|530549733|ref|YP_008430288.1| - 3.1e-06 27.1 0.0 4.8e-06 26.5 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) UPF0020 PF01170.18 gi|530549733|ref|YP_008430288.1| - 3.2e-06 27.0 0.0 7.8e-05 22.4 0.0 2.1 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 MTS PF05175.14 gi|530549733|ref|YP_008430288.1| - 3e-05 23.6 0.0 4.6e-05 23.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_18 PF12847.7 gi|530549733|ref|YP_008430288.1| - 7.6e-05 22.7 0.0 0.00013 21.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_29 PF03141.16 gi|530549733|ref|YP_008430288.1| - 8.5e-05 21.3 0.0 9.7e-05 21.1 0.0 1.1 1 0 0 1 1 1 1 Putative S-adenosyl-L-methionine-dependent methyltransferase TehB PF03848.14 gi|530549733|ref|YP_008430288.1| - 9.1e-05 21.9 0.0 0.00013 21.5 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_32 PF13679.6 gi|530549733|ref|YP_008430288.1| - 0.00015 21.8 0.0 0.00021 21.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|530549733|ref|YP_008430288.1| - 0.00015 21.3 0.0 0.00018 21.0 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_15 PF09445.10 gi|530549733|ref|YP_008430288.1| - 0.00037 20.1 0.0 0.00052 19.6 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_8 PF05148.15 gi|530549733|ref|YP_008430288.1| - 0.00066 19.6 0.1 0.0015 18.4 0.1 1.7 1 1 0 1 1 1 1 Hypothetical methyltransferase ADH_zinc_N PF00107.26 gi|530549733|ref|YP_008430288.1| - 0.005 16.8 0.1 0.012 15.6 0.1 1.6 1 1 0 1 1 1 1 Zinc-binding dehydrogenase DUF938 PF06080.12 gi|530549733|ref|YP_008430288.1| - 0.013 15.2 0.0 0.02 14.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF938) Methyltransf_24 PF13578.6 gi|530549733|ref|YP_008430288.1| - 0.017 16.2 0.0 0.12 13.4 0.0 2.1 2 0 0 2 2 2 0 Methyltransferase domain RrnaAD PF00398.20 gi|530549733|ref|YP_008430288.1| - 0.019 14.1 0.0 0.026 13.6 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Methyltransf_9 PF08003.11 gi|530549733|ref|YP_008430288.1| - 0.02 13.8 0.0 0.034 13.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) DOT1 PF08123.13 gi|530549733|ref|YP_008430288.1| - 0.02 14.4 0.0 0.035 13.6 0.0 1.4 1 0 0 1 1 1 0 Histone methylation protein DOT1 TPMT PF05724.11 gi|530549733|ref|YP_008430288.1| - 0.022 14.4 0.1 0.033 13.8 0.1 1.4 1 1 0 1 1 1 0 Thiopurine S-methyltransferase (TPMT) SAM_MT PF04445.13 gi|530549733|ref|YP_008430288.1| - 0.048 13.1 0.1 0.076 12.4 0.1 1.3 1 0 0 1 1 1 0 Putative SAM-dependent methyltransferase Methyltransf_20 PF12147.8 gi|530549733|ref|YP_008430288.1| - 0.2 10.8 0.0 0.3 10.2 0.0 1.2 1 0 0 1 1 1 0 Putative methyltransferase CheR PF01739.18 gi|530549733|ref|YP_008430288.1| - 0.21 11.0 0.2 1.3 8.4 0.0 2.1 1 1 0 2 2 2 0 CheR methyltransferase, SAM binding domain DUF3322 PF11795.8 gi|530549734|ref|YP_008430289.1| - 0.068 13.2 0.0 0.086 12.8 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria N-term (DUF3322) DS PF01916.17 gi|530549734|ref|YP_008430289.1| - 0.18 11.0 0.4 0.23 10.7 0.4 1.1 1 0 0 1 1 1 0 Deoxyhypusine synthase PmbA_TldD PF01523.16 gi|530549735|ref|YP_008430290.1| - 4.5e-49 167.8 1.1 5.5e-49 167.5 1.1 1.1 1 0 0 1 1 1 1 Putative modulator of DNA gyrase Ribosomal_L19 PF01245.20 gi|530549735|ref|YP_008430290.1| - 0.04 13.9 0.0 0.11 12.4 0.0 1.7 1 0 0 1 1 1 0 Ribosomal protein L19 PmbA_TldD PF01523.16 gi|530549737|ref|YP_008430292.1| - 6.6e-61 206.6 0.3 1.1e-60 205.9 0.3 1.4 1 0 0 1 1 1 1 Putative modulator of DNA gyrase GDC-P PF02347.16 gi|530549738|ref|YP_008430293.1| - 3.4e-13 49.2 0.0 8.1e-10 38.1 0.0 2.1 2 0 0 2 2 2 2 Glycine cleavage system P-protein Aminotran_5 PF00266.19 gi|530549738|ref|YP_008430293.1| - 3.2e-09 36.2 0.0 8.7e-09 34.8 0.0 1.6 1 1 0 1 1 1 1 Aminotransferase class-V Pyridoxal_deC PF00282.19 gi|530549738|ref|YP_008430293.1| - 2.7e-05 23.1 0.0 0.0002 20.2 0.0 1.9 1 1 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain Beta_elim_lyase PF01212.21 gi|530549738|ref|YP_008430293.1| - 0.00018 20.9 0.0 0.00026 20.4 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.17 gi|530549738|ref|YP_008430293.1| - 0.012 15.0 0.1 0.1 11.9 0.0 2.0 2 0 0 2 2 2 0 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.20 gi|530549738|ref|YP_008430293.1| - 0.061 11.8 0.0 0.096 11.2 0.0 1.2 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme GDC-P PF02347.16 gi|530549739|ref|YP_008430294.1| - 2e-122 409.1 0.0 2.5e-122 408.8 0.0 1.0 1 0 0 1 1 1 1 Glycine cleavage system P-protein Aminotran_5 PF00266.19 gi|530549739|ref|YP_008430294.1| - 4.8e-06 25.8 0.1 9.2e-06 24.8 0.1 1.4 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.21 gi|530549739|ref|YP_008430294.1| - 0.0016 17.7 0.0 0.013 14.7 0.0 2.0 2 0 0 2 2 2 1 Aminotransferase class I and II HAD_2 PF13419.6 gi|530549740|ref|YP_008430295.1| - 7.5e-11 42.4 0.1 2e-10 41.0 0.1 1.7 1 1 1 2 2 2 1 Haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|530549740|ref|YP_008430295.1| - 0.00021 21.8 0.1 0.00032 21.2 0.1 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|530549740|ref|YP_008430295.1| - 0.00071 19.9 0.0 0.0065 16.8 0.0 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|530549740|ref|YP_008430295.1| - 0.002 17.9 0.0 0.045 13.5 0.0 2.2 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase NT5C PF06941.12 gi|530549740|ref|YP_008430295.1| - 0.051 13.5 0.1 0.62 9.9 0.1 2.3 1 1 0 1 1 1 0 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) Hydrolase_6 PF13344.6 gi|530549740|ref|YP_008430295.1| - 0.066 13.3 0.0 3.3 7.9 0.0 2.3 2 0 0 2 2 2 0 Haloacid dehalogenase-like hydrolase Metallophos PF00149.28 gi|530549742|ref|YP_008430297.1| - 2.7e-05 24.7 0.3 5.9e-05 23.7 0.3 1.7 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|530549742|ref|YP_008430297.1| - 8.4e-05 22.8 0.0 0.00012 22.3 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain PrsW-protease PF13367.6 gi|530549743|ref|YP_008430298.1| - 8e-32 110.3 18.1 1.1e-31 109.9 18.1 1.1 1 0 0 1 1 1 1 PrsW family intramembrane metalloprotease YhfC PF10086.9 gi|530549743|ref|YP_008430298.1| - 0.0011 18.3 10.1 0.0016 17.9 5.6 2.4 2 1 0 2 2 2 1 YhfC intramembrane metalloprotease DUF2418 PF10332.9 gi|530549743|ref|YP_008430298.1| - 0.28 11.8 2.0 0.37 11.4 0.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2418) Lebercilin PF15619.6 gi|530549744|ref|YP_008430299.1| - 0.014 15.1 0.3 0.016 14.9 0.3 1.1 1 0 0 1 1 1 0 Ciliary protein causing Leber congenital amaurosis disease Rad9 PF04139.13 gi|530549744|ref|YP_008430299.1| - 0.016 14.7 0.2 0.016 14.7 0.2 1.0 1 0 0 1 1 1 0 Rad9 HMMR_C PF15908.5 gi|530549744|ref|YP_008430299.1| - 0.021 15.1 0.4 0.022 15.0 0.4 1.2 1 0 0 1 1 1 0 Hyaluronan mediated motility receptor C-terminal Bacillus_HBL PF05791.11 gi|530549744|ref|YP_008430299.1| - 0.046 13.5 0.0 0.047 13.5 0.0 1.1 1 0 0 1 1 1 0 Bacillus haemolytic enterotoxin (HBL) OPT PF03169.15 gi|530549745|ref|YP_008430300.1| - 8.6e-64 216.2 52.8 9.9e-64 216.0 52.8 1.0 1 0 0 1 1 1 1 OPT oligopeptide transporter protein TACC_C PF05010.14 gi|530549746|ref|YP_008430301.1| - 0.0031 17.3 0.7 0.004 17.0 0.7 1.2 1 0 0 1 1 1 1 Transforming acidic coiled-coil-containing protein (TACC), C-terminal DUF2959 PF11172.8 gi|530549746|ref|YP_008430301.1| - 0.014 15.5 0.2 0.021 15.0 0.2 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2959) TBCA PF02970.16 gi|530549746|ref|YP_008430301.1| - 0.044 14.1 2.5 0.074 13.4 2.5 1.3 1 0 0 1 1 1 0 Tubulin binding cofactor A T3SS_needle_E PF08988.10 gi|530549746|ref|YP_008430301.1| - 0.052 13.7 0.3 0.19 11.9 0.3 1.9 2 0 0 2 2 2 0 Type III secretion system, cytoplasmic E component of needle Fzo_mitofusin PF04799.13 gi|530549746|ref|YP_008430301.1| - 0.055 13.0 0.1 0.081 12.5 0.1 1.4 1 0 0 1 1 1 0 fzo-like conserved region THUMP PF02926.17 gi|530549748|ref|YP_008430303.1| - 0.072 13.2 0.0 0.18 11.9 0.0 1.8 2 0 0 2 2 2 0 THUMP domain LPAM_1 PF08139.12 gi|530549749|ref|YP_008430304.1| - 0.024 15.1 1.0 0.04 14.4 1.0 1.4 1 0 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site DUF1667 PF07892.11 gi|530549750|ref|YP_008430305.1| - 3.9e-30 103.7 2.7 3.9e-30 103.7 2.7 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF1667) Molybdop_Fe4S4 PF04879.16 gi|530549750|ref|YP_008430305.1| - 0.00046 20.1 3.0 0.00046 20.1 3.0 2.1 2 1 0 2 2 2 1 Molybdopterin oxidoreductase Fe4S4 domain Pyr_redox_2 PF07992.14 gi|530549751|ref|YP_008430306.1| - 1.9e-29 102.8 0.3 2.7e-29 102.3 0.3 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|530549751|ref|YP_008430306.1| - 5.6e-14 52.1 1.6 1.3e-05 24.6 0.0 2.8 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|530549751|ref|YP_008430306.1| - 1.8e-13 50.7 0.4 2.1e-11 43.8 0.0 2.4 2 1 1 3 3 3 1 FAD dependent oxidoreductase Pyr_redox PF00070.27 gi|530549751|ref|YP_008430306.1| - 5.2e-12 46.2 2.1 0.00015 22.3 0.6 3.6 3 0 0 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|530549751|ref|YP_008430306.1| - 4e-10 39.8 0.1 2.1e-06 27.9 0.0 2.5 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.14 gi|530549751|ref|YP_008430306.1| - 1.4e-08 33.9 4.9 3e-07 29.5 0.2 3.3 4 0 0 4 4 4 1 HI0933-like protein FAD_binding_2 PF00890.24 gi|530549751|ref|YP_008430306.1| - 4.2e-08 32.7 9.6 1.9e-06 27.3 0.7 3.9 3 1 2 5 5 5 2 FAD binding domain Thi4 PF01946.17 gi|530549751|ref|YP_008430306.1| - 2.7e-07 30.1 0.1 0.0012 18.1 0.0 2.4 2 0 0 2 2 2 2 Thi4 family GIDA PF01134.22 gi|530549751|ref|YP_008430306.1| - 6.5e-06 25.5 1.2 1.6e-05 24.2 0.0 2.2 3 0 0 3 3 3 1 Glucose inhibited division protein A DAO PF01266.24 gi|530549751|ref|YP_008430306.1| - 8.2e-06 25.6 5.0 0.0027 17.4 0.3 3.6 3 1 0 4 4 4 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|530549751|ref|YP_008430306.1| - 1.2e-05 24.7 0.6 0.01 15.1 0.1 2.3 2 0 0 2 2 2 2 FAD binding domain Lycopene_cycl PF05834.12 gi|530549751|ref|YP_008430306.1| - 5.4e-05 22.4 3.5 0.0018 17.4 0.3 2.6 3 0 0 3 3 3 2 Lycopene cyclase protein NAD_binding_7 PF13241.6 gi|530549751|ref|YP_008430306.1| - 0.00017 22.0 0.1 0.018 15.5 0.2 2.6 2 0 0 2 2 2 1 Putative NAD(P)-binding AlaDh_PNT_C PF01262.21 gi|530549751|ref|YP_008430306.1| - 0.00029 20.2 5.0 0.002 17.5 0.1 2.4 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain 2-Hacid_dh_C PF02826.19 gi|530549751|ref|YP_008430306.1| - 0.0057 16.0 1.3 0.83 9.0 0.3 2.3 2 0 0 2 2 2 2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ELFV_dehydrog PF00208.21 gi|530549751|ref|YP_008430306.1| - 0.018 14.8 0.0 0.055 13.2 0.0 1.9 1 0 0 1 1 1 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase UDPG_MGDP_dh_N PF03721.14 gi|530549751|ref|YP_008430306.1| - 0.11 12.1 0.4 1.9 8.0 0.2 2.3 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DAO PF01266.24 gi|530549752|ref|YP_008430307.1| - 9.1e-67 226.1 0.1 1.1e-66 225.9 0.1 1.1 1 0 0 1 1 1 1 FAD dependent oxidoreductase Fer2_BFD PF04324.15 gi|530549752|ref|YP_008430307.1| - 1.1e-13 51.3 1.6 2.6e-13 50.1 1.6 1.7 1 0 0 1 1 1 1 BFD-like [2Fe-2S] binding domain Pyr_redox_2 PF07992.14 gi|530549752|ref|YP_008430307.1| - 5.3e-08 32.5 0.4 0.0039 16.5 0.0 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|530549752|ref|YP_008430307.1| - 1e-07 32.1 0.0 2e-07 31.1 0.0 1.5 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.27 gi|530549752|ref|YP_008430307.1| - 3.3e-05 24.4 4.6 0.028 15.0 0.2 2.5 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|530549752|ref|YP_008430307.1| - 0.00019 20.3 0.8 0.35 9.5 0.1 2.2 2 0 0 2 2 2 2 HI0933-like protein Thi4 PF01946.17 gi|530549752|ref|YP_008430307.1| - 0.0003 20.1 1.3 0.00064 19.0 0.2 2.0 2 0 0 2 2 2 1 Thi4 family Pyr_redox_3 PF13738.6 gi|530549752|ref|YP_008430307.1| - 0.0014 17.9 0.9 0.053 12.8 0.0 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.6 gi|530549752|ref|YP_008430307.1| - 0.0014 18.6 0.8 0.013 15.5 0.1 2.2 2 0 0 2 2 2 1 FAD-NAD(P)-binding FAD_binding_3 PF01494.19 gi|530549752|ref|YP_008430307.1| - 0.0042 16.4 0.1 0.016 14.5 0.0 1.8 2 0 0 2 2 2 1 FAD binding domain 3HCDH_N PF02737.18 gi|530549752|ref|YP_008430307.1| - 0.014 15.3 0.1 0.029 14.3 0.1 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FAD_binding_2 PF00890.24 gi|530549752|ref|YP_008430307.1| - 0.022 13.9 0.7 2.6 7.0 0.0 2.1 2 0 0 2 2 2 0 FAD binding domain Trp_halogenase PF04820.14 gi|530549752|ref|YP_008430307.1| - 0.029 13.2 3.4 0.82 8.4 0.4 2.2 2 0 0 2 2 2 0 Tryptophan halogenase TrkA_N PF02254.18 gi|530549752|ref|YP_008430307.1| - 0.038 14.3 0.1 0.11 12.7 0.1 1.8 1 0 0 1 1 1 0 TrkA-N domain Lycopene_cycl PF05834.12 gi|530549752|ref|YP_008430307.1| - 0.072 12.1 0.1 0.38 9.8 0.1 2.2 3 0 0 3 3 3 0 Lycopene cyclase protein FMO-like PF00743.19 gi|530549752|ref|YP_008430307.1| - 0.11 11.0 0.0 0.17 10.3 0.0 1.2 1 0 0 1 1 1 0 Flavin-binding monooxygenase-like Sigma54_activat PF00158.26 gi|530549753|ref|YP_008430308.1| - 0.058 13.1 0.0 0.093 12.4 0.0 1.3 1 0 0 1 1 1 0 Sigma-54 interaction domain GP17 PF17420.2 gi|530549753|ref|YP_008430308.1| - 0.092 12.9 0.4 0.19 11.9 0.1 1.7 2 1 0 2 2 2 0 Superinfection exclusion gene product 17 GDPD PF03009.17 gi|530549755|ref|YP_008430310.1| - 5.1e-33 114.9 0.0 6.5e-31 108.0 0.0 2.2 1 1 0 1 1 1 1 Glycerophosphoryl diester phosphodiesterase family PI-PLC-X PF00388.19 gi|530549755|ref|YP_008430310.1| - 0.026 14.1 0.0 0.054 13.1 0.0 1.5 1 0 0 1 1 1 0 Phosphatidylinositol-specific phospholipase C, X domain THUMP PF02926.17 gi|530549755|ref|YP_008430310.1| - 0.048 13.8 0.4 0.085 13.0 0.4 1.4 1 0 0 1 1 1 0 THUMP domain GDPD PF03009.17 gi|530549756|ref|YP_008430311.1| - 1.3e-13 51.3 0.0 9.1e-13 48.5 0.0 2.0 1 1 1 2 2 2 2 Glycerophosphoryl diester phosphodiesterase family AAA_31 PF13614.6 gi|530549758|ref|YP_008430313.1| - 1.1e-63 214.4 0.2 2.1e-63 213.5 0.2 1.4 2 0 0 2 2 2 1 AAA domain CbiA PF01656.23 gi|530549758|ref|YP_008430313.1| - 2.4e-26 92.3 0.1 3.1e-26 91.9 0.1 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|530549758|ref|YP_008430313.1| - 7.2e-17 61.7 0.0 1e-16 61.1 0.0 1.3 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CBP_BcsQ PF06564.12 gi|530549758|ref|YP_008430313.1| - 4.9e-15 55.6 0.0 9.2e-15 54.8 0.0 1.4 1 1 0 1 1 1 1 Cellulose biosynthesis protein BcsQ Fer4_NifH PF00142.18 gi|530549758|ref|YP_008430313.1| - 8.7e-14 51.6 0.1 4.1e-13 49.4 0.1 1.8 1 1 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family MipZ PF09140.11 gi|530549758|ref|YP_008430313.1| - 1.8e-12 47.1 1.0 5.1e-11 42.4 0.4 2.5 1 1 1 2 2 2 1 ATPase MipZ ArsA_ATPase PF02374.15 gi|530549758|ref|YP_008430313.1| - 3.9e-07 29.6 0.9 0.00016 21.0 0.4 2.3 2 0 0 2 2 2 2 Anion-transporting ATPase VirC1 PF07015.11 gi|530549758|ref|YP_008430313.1| - 0.00018 20.9 0.2 0.00086 18.7 0.1 2.0 2 0 0 2 2 2 1 VirC1 protein ATP_bind_1 PF03029.17 gi|530549758|ref|YP_008430313.1| - 0.0019 18.0 0.2 0.015 15.1 0.2 2.0 1 1 0 1 1 1 1 Conserved hypothetical ATP binding protein AAA_24 PF13479.6 gi|530549758|ref|YP_008430313.1| - 0.0025 17.5 0.0 0.0047 16.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain CLP1_P PF16575.5 gi|530549758|ref|YP_008430313.1| - 0.0071 16.2 0.0 0.013 15.3 0.0 1.4 1 0 0 1 1 1 1 mRNA cleavage and polyadenylation factor CLP1 P-loop MeaB PF03308.16 gi|530549758|ref|YP_008430313.1| - 0.0074 15.3 0.2 0.012 14.7 0.2 1.2 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_25 PF13481.6 gi|530549758|ref|YP_008430313.1| - 0.019 14.6 0.4 0.049 13.2 0.4 1.8 1 1 0 1 1 1 0 AAA domain DUF1611 PF07755.11 gi|530549758|ref|YP_008430313.1| - 0.039 13.2 0.0 0.066 12.5 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1611_C) P-loop domain SRP54 PF00448.22 gi|530549758|ref|YP_008430313.1| - 0.1 12.2 1.9 0.75 9.4 0.2 2.4 2 1 0 2 2 2 0 SRP54-type protein, GTPase domain MFS_1 PF07690.16 gi|530549759|ref|YP_008430314.1| - 3.3e-59 200.6 44.9 1.8e-42 145.6 20.4 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.6 gi|530549759|ref|YP_008430314.1| - 2.2e-33 115.4 27.5 3.1e-33 115.0 27.5 1.2 1 0 0 1 1 1 1 MFS/sugar transport protein LacY_symp PF01306.19 gi|530549759|ref|YP_008430314.1| - 1.3e-08 34.1 28.7 2.4e-08 33.2 8.6 3.0 3 0 0 3 3 3 2 LacY proton/sugar symporter Sugar_tr PF00083.24 gi|530549759|ref|YP_008430314.1| - 8.9e-08 31.4 26.5 4.8e-06 25.7 16.6 2.4 1 1 1 2 2 2 2 Sugar (and other) transporter PUCC PF03209.15 gi|530549759|ref|YP_008430314.1| - 1.8e-07 30.6 10.7 4.1e-07 29.3 10.7 1.5 1 1 0 1 1 1 1 PUCC protein MFS_3 PF05977.13 gi|530549759|ref|YP_008430314.1| - 0.0038 15.7 3.1 0.0038 15.7 3.1 1.8 2 0 0 2 2 2 1 Transmembrane secretion effector OATP PF03137.20 gi|530549759|ref|YP_008430314.1| - 0.0053 15.1 20.7 0.005 15.2 5.1 3.7 3 1 1 4 4 4 2 Organic Anion Transporter Polypeptide (OATP) family MFS_1 PF07690.16 gi|530549760|ref|YP_008430315.1| - 1.7e-24 86.4 43.2 4.1e-13 49.0 21.5 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.6 gi|530549760|ref|YP_008430315.1| - 4.6e-14 51.8 20.6 4.6e-14 51.8 20.6 1.4 1 1 0 1 1 1 1 MFS/sugar transport protein BT1 PF03092.16 gi|530549760|ref|YP_008430315.1| - 0.44 8.7 7.7 0.034 12.4 0.5 2.3 2 0 0 2 2 2 0 BT1 family DUF2663 PF10864.8 gi|530549760|ref|YP_008430315.1| - 8.8 6.8 6.1 9.3 6.7 1.2 3.0 2 1 2 4 4 4 0 Protein of unknown function (DUF2663) Hydrolase_4 PF12146.8 gi|530549761|ref|YP_008430316.1| - 2.7e-18 66.1 0.0 3.9e-13 49.2 0.0 2.1 1 1 1 2 2 2 2 Serine aminopeptidase, S33 Peptidase_S15 PF02129.18 gi|530549761|ref|YP_008430316.1| - 5.5e-18 65.5 0.0 7.1e-14 52.0 0.0 2.1 2 0 0 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) Abhydrolase_1 PF00561.20 gi|530549761|ref|YP_008430316.1| - 1e-16 61.4 0.0 4.4e-14 52.8 0.0 2.1 1 1 1 2 2 2 2 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|530549761|ref|YP_008430316.1| - 9.4e-15 55.8 0.0 1.7e-14 54.9 0.0 1.5 1 1 0 1 1 1 1 Alpha/beta hydrolase family Peptidase_S9 PF00326.21 gi|530549761|ref|YP_008430316.1| - 1.8e-13 50.5 0.0 2.5e-13 50.0 0.0 1.1 1 0 0 1 1 1 1 Prolyl oligopeptidase family DLH PF01738.18 gi|530549761|ref|YP_008430316.1| - 4.7e-11 42.7 0.0 6.4e-10 39.0 0.0 2.4 1 1 0 1 1 1 1 Dienelactone hydrolase family Abhydrolase_2 PF02230.16 gi|530549761|ref|YP_008430316.1| - 2.3e-06 27.6 0.0 0.011 15.5 0.0 2.8 2 1 1 3 3 3 2 Phospholipase/Carboxylesterase FSH1 PF03959.13 gi|530549761|ref|YP_008430316.1| - 5.9e-05 22.8 0.0 0.0018 18.0 0.0 2.8 1 1 1 3 3 3 1 Serine hydrolase (FSH1) BAAT_C PF08840.11 gi|530549761|ref|YP_008430316.1| - 0.0011 19.0 0.0 0.0061 16.5 0.0 2.1 1 1 0 1 1 1 1 BAAT / Acyl-CoA thioester hydrolase C terminal Acyl_transf_2 PF02273.15 gi|530549761|ref|YP_008430316.1| - 0.0014 17.9 0.0 0.0022 17.3 0.0 1.3 1 0 0 1 1 1 1 Acyl transferase DUF829 PF05705.14 gi|530549761|ref|YP_008430316.1| - 0.0047 16.9 0.0 0.0074 16.2 0.0 1.4 1 1 0 1 1 1 1 Eukaryotic protein of unknown function (DUF829) PAF-AH_p_II PF03403.13 gi|530549761|ref|YP_008430316.1| - 0.0084 14.7 0.0 0.043 12.3 0.0 2.1 2 1 1 3 3 3 1 Platelet-activating factor acetylhydrolase, isoform II AXE1 PF05448.12 gi|530549761|ref|YP_008430316.1| - 0.0084 14.8 0.1 3 6.4 0.0 2.5 1 1 1 2 2 2 2 Acetyl xylan esterase (AXE1) PGAP1 PF07819.13 gi|530549761|ref|YP_008430316.1| - 0.031 14.0 0.0 0.049 13.4 0.0 1.2 1 0 0 1 1 1 0 PGAP1-like protein LIP PF03583.14 gi|530549761|ref|YP_008430316.1| - 0.093 12.0 0.0 0.57 9.5 0.0 2.0 2 0 0 2 2 2 0 Secretory lipase Esterase PF00756.20 gi|530549761|ref|YP_008430316.1| - 0.1 12.3 0.0 0.13 11.9 0.0 1.2 1 0 0 1 1 1 0 Putative esterase DUF676 PF05057.14 gi|530549761|ref|YP_008430316.1| - 0.12 11.9 0.0 0.17 11.4 0.0 1.2 1 0 0 1 1 1 0 Putative serine esterase (DUF676) Lipase PF00151.19 gi|530549761|ref|YP_008430316.1| - 0.12 11.7 0.0 0.18 11.1 0.0 1.2 1 0 0 1 1 1 0 Lipase Gp_dh_C PF02800.20 gi|530549762|ref|YP_008430317.1| - 3.1e-32 111.3 0.1 4.4e-32 110.8 0.1 1.2 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DapB_N PF01113.20 gi|530549762|ref|YP_008430317.1| - 1.7e-15 57.2 0.7 1.4e-14 54.2 0.2 2.2 1 1 1 2 2 2 1 Dihydrodipicolinate reductase, N-terminus Gp_dh_N PF00044.24 gi|530549762|ref|YP_008430317.1| - 5.2e-06 26.7 0.3 3.3e-05 24.2 0.0 2.5 3 0 0 3 3 3 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|530549762|ref|YP_008430317.1| - 8.3e-05 22.0 0.1 0.021 14.2 0.1 2.4 1 1 1 2 2 2 2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.22 gi|530549762|ref|YP_008430317.1| - 0.00096 20.0 0.0 0.0033 18.2 0.0 2.0 1 1 1 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold NAD_binding_3 PF03447.16 gi|530549762|ref|YP_008430317.1| - 0.002 18.7 0.1 0.26 12.0 0.0 2.9 3 1 0 3 3 3 1 Homoserine dehydrogenase, NAD binding domain DUF4538 PF15061.6 gi|530549763|ref|YP_008430318.1| - 6.2 6.6 5.6 10 5.9 2.4 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4538) DUF167 PF02594.16 gi|530549764|ref|YP_008430319.1| - 1.3e-25 89.3 0.5 1.5e-25 89.1 0.5 1.1 1 0 0 1 1 1 1 Uncharacterised ACR, YggU family COG1872 NosD PF05048.13 gi|530549765|ref|YP_008430320.1| - 3.6e-23 82.1 12.3 1.3e-14 54.0 0.1 2.4 1 1 1 2 2 2 2 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.6 gi|530549765|ref|YP_008430320.1| - 3.9e-10 39.8 18.9 7.9e-06 25.8 12.8 2.3 1 1 1 2 2 2 2 Right handed beta helix region DUF402 PF04167.13 gi|530549766|ref|YP_008430321.1| - 1.2e-14 54.2 0.8 1.9e-14 53.6 0.8 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF402) HGTP_anticodon PF03129.20 gi|530549767|ref|YP_008430322.1| - 4.8e-25 87.5 2.2 3.1e-24 84.9 0.2 2.7 2 0 0 2 2 2 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|530549767|ref|YP_008430322.1| - 8.6e-11 42.1 0.1 4.6e-10 39.8 0.1 2.4 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) tRNA-synt_2 PF00152.20 gi|530549767|ref|YP_008430322.1| - 1.2e-05 24.6 0.8 0.048 12.7 0.1 2.4 2 0 0 2 2 2 2 tRNA synthetases class II (D, K and N) tRNA_synthFbeta PF17759.1 gi|530549767|ref|YP_008430322.1| - 0.004 16.6 0.0 0.035 13.6 0.0 2.3 1 1 0 1 1 1 1 Phenylalanyl tRNA synthetase beta chain CLM domain Zn-ribbon_8 PF09723.10 gi|530549767|ref|YP_008430322.1| - 0.0067 16.5 0.3 6.3 7.0 0.1 2.6 2 0 0 2 2 2 2 Zinc ribbon domain tRNA-synt_2d PF01409.20 gi|530549767|ref|YP_008430322.1| - 0.016 14.7 0.9 0.3 10.5 0.0 3.1 3 1 0 3 3 3 0 tRNA synthetases class II core domain (F) PadR PF03551.14 gi|530549767|ref|YP_008430322.1| - 0.055 13.4 0.1 9.6 6.3 0.0 2.9 2 0 0 2 2 2 0 Transcriptional regulator PadR-like family Plectin PF00681.20 gi|530549767|ref|YP_008430322.1| - 0.16 11.9 0.0 15 5.6 0.0 2.4 2 0 0 2 2 2 0 Plectin repeat DNA_RNApol_7kD PF03604.13 gi|530549767|ref|YP_008430322.1| - 0.19 11.5 2.5 7.5 6.3 0.2 2.5 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit TF_Zn_Ribbon PF08271.12 gi|530549767|ref|YP_008430322.1| - 0.19 11.3 0.6 6.8 6.3 0.1 2.5 2 0 0 2 2 2 0 TFIIB zinc-binding Tugs PF17840.1 gi|530549767|ref|YP_008430322.1| - 0.25 11.6 0.6 0.7 10.1 0.6 1.8 1 0 0 1 1 1 0 Tethering Ubl4a to BAGS domain XPA_N PF01286.18 gi|530549767|ref|YP_008430322.1| - 0.25 11.4 1.3 16 5.6 0.1 2.3 2 0 0 2 2 2 0 XPA protein N-terminal DUF257 PF03192.13 gi|530549768|ref|YP_008430323.1| - 1.3e-36 126.3 2.0 1.5e-36 126.2 2.0 1.0 1 0 0 1 1 1 1 Pyrococcus protein of unknown function, DUF257 Methyltransf_8 PF05148.15 gi|530549768|ref|YP_008430323.1| - 0.063 13.1 0.1 0.085 12.7 0.1 1.2 1 0 0 1 1 1 0 Hypothetical methyltransferase Metallophos_2 PF12850.7 gi|530549769|ref|YP_008430324.1| - 1.1e-23 84.2 0.0 2.5e-23 83.1 0.0 1.5 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|530549769|ref|YP_008430324.1| - 3.3e-21 76.7 0.3 4.9e-21 76.2 0.3 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_3 PF14582.6 gi|530549769|ref|YP_008430324.1| - 8.3e-20 71.2 1.6 1.4e-12 47.5 0.4 2.3 1 1 1 2 2 2 2 Metallophosphoesterase, calcineurin superfamily NPA PF16469.5 gi|530549770|ref|YP_008430325.1| - 0.08 13.5 0.1 0.11 13.1 0.1 1.2 1 0 0 1 1 1 0 Nematode polyprotein allergen ABA-1 DS PF01916.17 gi|530549771|ref|YP_008430326.1| - 7.7e-114 379.8 0.0 9e-114 379.6 0.0 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase BLI1 PF17324.2 gi|530549771|ref|YP_008430326.1| - 0.047 14.4 0.0 0.095 13.4 0.0 1.5 1 0 0 1 1 1 0 BLOC-1 interactor 1 Glyco_hydro_80 PF13647.6 gi|530549771|ref|YP_008430326.1| - 0.15 11.5 0.0 0.27 10.7 0.0 1.3 1 0 0 1 1 1 0 Glycosyl hydrolase family 80 of chitosanase A DUF86 PF01934.17 gi|530549772|ref|YP_008430327.1| - 7.4e-21 74.2 4.6 8.8e-21 74.0 4.2 1.2 1 1 0 1 1 1 1 Protein of unknown function DUF86 RRM_9 PF18444.1 gi|530549772|ref|YP_008430327.1| - 0.01 15.6 0.0 0.018 14.9 0.0 1.3 1 0 0 1 1 1 0 RNA recognition motif DUF4145 PF13643.6 gi|530549772|ref|YP_008430327.1| - 0.019 15.0 0.4 0.035 14.2 0.3 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4145) HA2 PF04408.23 gi|530549772|ref|YP_008430327.1| - 0.044 14.1 0.0 0.062 13.6 0.0 1.2 1 0 0 1 1 1 0 Helicase associated domain (HA2) Peptidase_C10 PF01640.17 gi|530549772|ref|YP_008430327.1| - 0.07 13.4 0.0 0.077 13.3 0.0 1.1 1 0 0 1 1 1 0 Peptidase C10 family Polbeta PF18765.1 gi|530549773|ref|YP_008430328.1| - 4.3e-09 36.3 0.1 1.7e-08 34.4 0.0 2.0 2 1 0 2 2 2 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 gi|530549773|ref|YP_008430328.1| - 4.7e-07 30.0 0.6 1.3e-06 28.6 0.6 1.8 1 1 0 1 1 1 1 Nucleotidyltransferase domain MoeA_N PF03453.17 gi|530549774|ref|YP_008430329.1| - 6.2e-45 152.8 0.1 8.9e-45 152.3 0.1 1.2 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|530549774|ref|YP_008430329.1| - 1.7e-17 63.4 0.0 4.1e-17 62.2 0.0 1.7 1 1 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.15 gi|530549774|ref|YP_008430329.1| - 8.6e-16 57.9 0.0 3.1e-15 56.1 0.0 2.0 1 0 0 1 1 1 1 MoeA C-terminal region (domain IV) Cyanate_lyase PF02560.14 gi|530549774|ref|YP_008430329.1| - 0.044 13.6 0.1 0.15 11.9 0.0 1.9 2 0 0 2 2 2 0 Cyanate lyase C-terminal domain MoCF_biosynth PF00994.24 gi|530549775|ref|YP_008430330.1| - 1.6e-39 134.8 0.2 1.8e-39 134.7 0.2 1.0 1 0 0 1 1 1 1 Probable molybdopterin binding domain LacAB_rpiB PF02502.18 gi|530549775|ref|YP_008430330.1| - 0.029 14.3 0.1 6.1 6.8 0.0 2.1 2 0 0 2 2 2 0 Ribose/Galactose Isomerase GATase_3 PF07685.14 gi|530549775|ref|YP_008430330.1| - 0.084 12.5 0.0 0.14 11.7 0.0 1.4 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain Methyltransf_25 PF13649.6 gi|530549776|ref|YP_008430331.1| - 3.7e-25 88.5 0.0 8.1e-25 87.4 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|530549776|ref|YP_008430331.1| - 2.9e-19 69.5 0.0 6.1e-19 68.5 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|530549776|ref|YP_008430331.1| - 7.6e-19 68.0 0.0 1e-18 67.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|530549776|ref|YP_008430331.1| - 1.4e-13 50.8 0.0 1.8e-13 50.4 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|530549776|ref|YP_008430331.1| - 3.5e-12 46.9 0.0 7.1e-12 45.9 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|530549776|ref|YP_008430331.1| - 3.2e-09 36.9 0.0 3.8e-09 36.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|530549776|ref|YP_008430331.1| - 1.2e-08 34.7 0.0 1.7e-08 34.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain TehB PF03848.14 gi|530549776|ref|YP_008430331.1| - 5.4e-07 29.2 0.0 6.7e-07 28.9 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB CMAS PF02353.20 gi|530549776|ref|YP_008430331.1| - 2.9e-05 23.5 0.0 5.1e-05 22.7 0.0 1.3 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_32 PF13679.6 gi|530549776|ref|YP_008430331.1| - 0.00053 20.0 0.0 0.0007 19.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MethyltransfD12 PF02086.15 gi|530549776|ref|YP_008430331.1| - 0.00075 19.3 0.0 0.00098 18.9 0.0 1.2 1 0 0 1 1 1 1 D12 class N6 adenine-specific DNA methyltransferase NodS PF05401.11 gi|530549776|ref|YP_008430331.1| - 0.00075 19.2 0.0 0.0013 18.4 0.0 1.3 1 0 0 1 1 1 1 Nodulation protein S (NodS) TPMT PF05724.11 gi|530549776|ref|YP_008430331.1| - 0.0012 18.6 0.0 0.0019 17.9 0.0 1.2 1 0 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) Methyltransf_15 PF09445.10 gi|530549776|ref|YP_008430331.1| - 0.0024 17.5 0.0 0.0039 16.8 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_2 PF00891.18 gi|530549776|ref|YP_008430331.1| - 0.0048 16.2 0.0 0.0069 15.7 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase domain RrnaAD PF00398.20 gi|530549776|ref|YP_008430331.1| - 0.0049 16.0 0.0 0.0068 15.5 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase CheR PF01739.18 gi|530549776|ref|YP_008430331.1| - 0.0092 15.5 0.1 0.32 10.4 0.0 2.5 1 1 1 2 2 2 1 CheR methyltransferase, SAM binding domain UPF0020 PF01170.18 gi|530549776|ref|YP_008430331.1| - 0.017 14.8 0.0 0.037 13.7 0.0 1.5 1 1 0 1 1 1 0 Putative RNA methylase family UPF0020 Methyltransf_18 PF12847.7 gi|530549776|ref|YP_008430331.1| - 0.038 13.9 0.0 0.061 13.3 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain PrmA PF06325.13 gi|530549776|ref|YP_008430331.1| - 0.12 11.8 0.0 0.16 11.3 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) OrfB_IS605 PF01385.19 gi|530547472|ref|YP_008430332.1| - 5.6e-29 100.8 1.5 7.5e-29 100.4 0.0 1.9 2 0 0 2 2 2 1 Probable transposase OrfB_Zn_ribbon PF07282.11 gi|530547472|ref|YP_008430332.1| - 7.1e-21 73.9 0.0 1.3e-20 73.1 0.0 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.8 gi|530547472|ref|YP_008430332.1| - 0.0022 17.4 0.1 0.0054 16.2 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain RuvX PF03652.15 gi|530547472|ref|YP_008430332.1| - 0.0066 16.8 0.0 0.019 15.4 0.0 1.7 1 1 0 1 1 1 1 Holliday junction resolvase MAP65_ASE1 PF03999.12 gi|530547472|ref|YP_008430332.1| - 0.028 13.2 0.1 0.042 12.6 0.1 1.2 1 0 0 1 1 1 0 Microtubule associated protein (MAP65/ASE1 family) Flu_PA PF00603.17 gi|530547472|ref|YP_008430332.1| - 0.076 11.1 0.0 0.12 10.5 0.0 1.2 1 0 0 1 1 1 0 Influenza RNA-dependent RNA polymerase subunit PA DUF2256 PF10013.9 gi|530547472|ref|YP_008430332.1| - 0.26 11.4 1.6 0.42 10.8 0.1 2.1 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2256) RHH_6 PF16762.5 gi|530549777|ref|YP_008430333.1| - 0.0021 18.6 0.1 0.0023 18.5 0.1 1.0 1 0 0 1 1 1 1 Ribbon-helix-helix domain RHH_1 PF01402.21 gi|530549777|ref|YP_008430333.1| - 0.021 14.8 0.2 0.037 14.0 0.2 1.4 1 0 0 1 1 1 0 Ribbon-helix-helix protein, copG family tRNA-synt_1 PF00133.22 gi|530549778|ref|YP_008430334.1| - 1.9e-146 488.8 0.7 2.7e-145 485.0 0.7 2.0 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|530549778|ref|YP_008430334.1| - 1.5e-37 128.9 0.9 3.4e-37 127.7 0.9 1.6 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 gi|530549778|ref|YP_008430334.1| - 1.5e-25 89.8 3.9 7.5e-16 57.9 0.0 3.8 4 0 0 4 4 4 3 tRNA synthetases class I (M) tRNA-synt_1e PF01406.19 gi|530549778|ref|YP_008430334.1| - 6.9e-06 25.6 0.0 0.039 13.3 0.0 2.5 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1_2 PF13603.6 gi|530549778|ref|YP_008430334.1| - 9.9e-06 25.2 0.0 4.3e-05 23.1 0.0 2.0 1 1 1 2 2 2 1 Leucyl-tRNA synthetase, Domain 2 HypA PF01155.19 gi|530549778|ref|YP_008430334.1| - 0.0057 16.7 0.2 0.44 10.6 0.2 2.4 2 0 0 2 2 2 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DUF2250 PF10007.9 gi|530549778|ref|YP_008430334.1| - 0.012 15.7 0.5 5.2 7.3 0.0 2.7 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) Zn-ribbon_8 PF09723.10 gi|530549778|ref|YP_008430334.1| - 0.013 15.6 2.5 0.089 12.9 0.7 2.5 2 0 0 2 2 2 0 Zinc ribbon domain zf-TFIIB PF13453.6 gi|530549778|ref|YP_008430334.1| - 0.022 14.1 2.3 3 7.2 0.0 3.0 3 0 0 3 3 3 0 Transcription factor zinc-finger DZR PF12773.7 gi|530549778|ref|YP_008430334.1| - 0.054 13.5 0.6 1.5 8.9 0.2 2.3 2 0 0 2 2 2 0 Double zinc ribbon TF_Zn_Ribbon PF08271.12 gi|530549778|ref|YP_008430334.1| - 0.089 12.3 4.6 1.4 8.5 0.2 3.1 3 0 0 3 3 3 0 TFIIB zinc-binding zf-FPG_IleRS PF06827.14 gi|530549778|ref|YP_008430334.1| - 0.32 10.9 2.1 6.1 6.8 0.1 2.6 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS zinc_ribbon_2 PF13240.6 gi|530549778|ref|YP_008430334.1| - 0.34 10.7 7.6 0.92 9.3 0.7 3.3 3 0 0 3 3 3 0 zinc-ribbon domain DUF35_N PF12172.8 gi|530549778|ref|YP_008430334.1| - 0.7 9.8 7.1 0.44 10.5 0.2 3.1 3 0 0 3 3 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf_UBZ PF18439.1 gi|530549778|ref|YP_008430334.1| - 0.71 9.5 5.0 7.6 6.2 0.1 3.4 3 0 0 3 3 3 0 Ubiquitin-Binding Zinc Finger zf-ACC PF17848.1 gi|530549778|ref|YP_008430334.1| - 3.4 7.8 7.8 29 4.9 0.6 3.7 3 0 0 3 3 3 0 Acetyl-coA carboxylase zinc finger domain RNA_Me_trans PF04252.13 gi|530549779|ref|YP_008430335.1| - 7.9e-07 28.9 0.0 1.7e-06 27.8 0.0 1.5 1 0 0 1 1 1 1 Predicted SAM-dependent RNA methyltransferase FGGY_N PF00370.21 gi|530549779|ref|YP_008430335.1| - 0.053 13.1 0.0 0.084 12.4 0.0 1.3 1 0 0 1 1 1 0 FGGY family of carbohydrate kinases, N-terminal domain DUF2515 PF10720.9 gi|530549780|ref|YP_008430336.1| - 0.027 13.7 0.1 0.043 13.0 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2515) Nodulin_late PF07127.11 gi|530549780|ref|YP_008430336.1| - 0.76 10.2 8.5 0.55 10.6 3.7 2.6 2 0 0 2 2 2 0 Late nodulin protein CRPA PF05745.11 gi|530549781|ref|YP_008430337.1| - 0.35 10.9 5.3 0.24 11.4 3.9 1.5 1 1 0 1 1 1 0 Chlamydia 15 kDa cysteine-rich outer membrane protein (CRPA) SH PF01445.17 gi|530549781|ref|YP_008430337.1| - 5.3 7.1 7.8 0.44 10.5 2.4 2.0 2 1 0 2 2 2 0 Viral small hydrophobic protein DUF4793 PF16041.5 gi|530549782|ref|YP_008430338.1| - 0.032 14.4 0.0 0.065 13.4 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4793) Peptidase_M48 PF01435.18 gi|530549783|ref|YP_008430339.1| - 9.1e-37 126.7 0.0 1.6e-36 125.9 0.0 1.4 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.11 gi|530549783|ref|YP_008430339.1| - 4.7e-05 22.7 0.0 7.7e-05 22.0 0.0 1.4 1 0 0 1 1 1 1 BlaR1 peptidase M56 FBPase_glpX PF03320.13 gi|530549783|ref|YP_008430339.1| - 0.014 14.3 0.0 0.021 13.7 0.0 1.2 1 0 0 1 1 1 0 Bacterial fructose-1,6-bisphosphatase, glpX-encoded Abhydrolase_9_N PF15420.6 gi|530549783|ref|YP_008430339.1| - 2.7 7.9 7.8 3.6 7.5 0.8 2.3 2 0 0 2 2 2 0 Alpha/beta-hydrolase family N-terminus MadM PF03818.13 gi|530549783|ref|YP_008430339.1| - 3.1 7.7 9.2 0.6 10.0 0.5 3.0 2 1 1 3 3 3 0 Malonate/sodium symporter MadM subunit AAA_18 PF13238.6 gi|530549784|ref|YP_008430340.1| - 2.4e-21 76.6 0.1 5e-21 75.6 0.1 1.5 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|530549784|ref|YP_008430340.1| - 9.1e-08 32.6 0.8 1.5e-06 28.7 0.1 2.6 1 1 1 2 2 2 1 AAA domain SKI PF01202.22 gi|530549784|ref|YP_008430340.1| - 1.2e-07 32.0 0.1 0.00013 22.1 0.0 2.2 1 1 1 2 2 2 2 Shikimate kinase Cytidylate_kin PF02224.18 gi|530549784|ref|YP_008430340.1| - 1.9e-06 27.8 0.1 0.0022 17.8 0.0 2.2 2 0 0 2 2 2 2 Cytidylate kinase AAA_28 PF13521.6 gi|530549784|ref|YP_008430340.1| - 5.5e-06 26.7 0.1 4.4e-05 23.8 0.1 2.0 1 1 1 2 2 2 1 AAA domain Cytidylate_kin2 PF13189.6 gi|530549784|ref|YP_008430340.1| - 7.4e-06 26.2 0.1 2.2e-05 24.7 0.0 1.9 2 0 0 2 2 2 1 Cytidylate kinase-like family AAA PF00004.29 gi|530549784|ref|YP_008430340.1| - 1.4e-05 25.6 0.1 2.3e-05 24.8 0.1 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) dNK PF01712.19 gi|530549784|ref|YP_008430340.1| - 2e-05 24.6 0.0 0.011 15.6 0.0 2.2 2 0 0 2 2 2 2 Deoxynucleoside kinase AAA_33 PF13671.6 gi|530549784|ref|YP_008430340.1| - 7.5e-05 22.9 0.0 0.0017 18.5 0.0 2.2 1 1 1 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|530549784|ref|YP_008430340.1| - 0.00013 22.2 0.3 0.001 19.3 0.3 2.1 1 1 0 1 1 1 1 AAA domain AAA_5 PF07728.14 gi|530549784|ref|YP_008430340.1| - 0.00021 21.3 1.3 0.031 14.3 0.0 2.2 1 1 1 2 2 2 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 gi|530549784|ref|YP_008430340.1| - 0.00056 20.3 0.1 0.0012 19.3 0.1 1.7 1 1 0 1 1 1 1 AAA ATPase domain Thymidylate_kin PF02223.17 gi|530549784|ref|YP_008430340.1| - 0.00061 19.5 0.2 1 9.0 0.0 2.2 2 0 0 2 2 2 2 Thymidylate kinase Zeta_toxin PF06414.12 gi|530549784|ref|YP_008430340.1| - 0.005 16.1 0.2 0.069 12.4 0.0 2.3 2 1 1 3 3 3 1 Zeta toxin ATP_bind_2 PF03668.15 gi|530549784|ref|YP_008430340.1| - 0.0056 16.0 0.3 0.01 15.2 0.3 1.4 1 1 0 1 1 1 1 P-loop ATPase protein family NTPase_1 PF03266.15 gi|530549784|ref|YP_008430340.1| - 0.0065 16.4 0.0 0.017 15.0 0.0 1.9 2 0 0 2 2 2 1 NTPase RuvB_N PF05496.12 gi|530549784|ref|YP_008430340.1| - 0.012 15.3 0.0 0.028 14.2 0.0 1.5 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain CoaE PF01121.20 gi|530549784|ref|YP_008430340.1| - 0.015 15.0 0.0 0.024 14.3 0.0 1.3 1 0 0 1 1 1 0 Dephospho-CoA kinase DUF87 PF01935.17 gi|530549784|ref|YP_008430340.1| - 0.02 15.0 0.2 2.2 8.3 0.2 2.2 1 1 1 2 2 2 0 Helicase HerA, central domain NACHT PF05729.12 gi|530549784|ref|YP_008430340.1| - 0.026 14.4 0.0 0.034 14.1 0.0 1.3 1 0 0 1 1 1 0 NACHT domain Rad17 PF03215.15 gi|530549784|ref|YP_008430340.1| - 0.033 14.1 0.0 0.04 13.8 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_3 PF07726.11 gi|530549784|ref|YP_008430340.1| - 0.035 13.9 0.1 0.17 11.8 0.0 1.9 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) PRK PF00485.18 gi|530549784|ref|YP_008430340.1| - 0.038 13.7 0.0 0.15 11.8 0.0 1.9 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family RNA_helicase PF00910.22 gi|530549784|ref|YP_008430340.1| - 0.045 14.2 0.0 0.077 13.4 0.0 1.4 1 0 0 1 1 1 0 RNA helicase TsaE PF02367.17 gi|530549784|ref|YP_008430340.1| - 0.087 12.8 0.4 0.24 11.4 0.0 1.9 2 1 1 3 3 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_24 PF13479.6 gi|530549784|ref|YP_008430340.1| - 0.096 12.4 0.1 0.15 11.7 0.1 1.6 1 1 1 2 2 2 0 AAA domain KTI12 PF08433.10 gi|530549784|ref|YP_008430340.1| - 0.11 12.0 0.1 0.22 11.0 0.0 1.6 2 0 0 2 2 2 0 Chromatin associated protein KTI12 ACDC PF14733.6 gi|530549784|ref|YP_008430340.1| - 0.11 12.8 0.0 0.23 11.8 0.0 1.4 1 0 0 1 1 1 0 AP2-coincident C-terminal CbiA PF01656.23 gi|530549784|ref|YP_008430340.1| - 0.13 12.4 0.2 0.34 11.0 0.0 1.7 2 1 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_14 PF13173.6 gi|530549784|ref|YP_008430340.1| - 0.13 12.3 0.1 0.65 10.0 0.0 2.0 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.22 gi|530549784|ref|YP_008430340.1| - 0.14 11.4 0.2 0.25 10.5 0.2 1.4 1 0 0 1 1 1 0 NB-ARC domain Proho_convert PF12177.8 gi|530549785|ref|YP_008430341.1| - 0.12 12.3 0.2 0.18 11.8 0.2 1.3 1 0 0 1 1 1 0 Prohormone convertase enzyme AdoMet_Synthase PF01941.19 gi|530549786|ref|YP_008430342.1| - 4.2e-180 598.7 6.4 4.8e-180 598.5 6.4 1.0 1 0 0 1 1 1 1 S-adenosylmethionine synthetase (AdoMet synthetase) S-AdoMet_synt_N PF00438.20 gi|530549786|ref|YP_008430342.1| - 0.073 13.8 2.2 0.14 12.8 0.0 2.6 3 1 0 3 3 3 0 S-adenosylmethionine synthetase, N-terminal domain Translin PF01997.16 gi|530549787|ref|YP_008430343.1| - 5.3e-17 62.5 1.3 2.4e-15 57.0 1.3 2.4 1 1 0 1 1 1 1 Translin family Stathmin PF00836.19 gi|530549787|ref|YP_008430343.1| - 0.023 14.7 4.9 0.023 14.7 4.9 1.7 2 0 0 2 2 2 0 Stathmin family Gas_vesicle_C PF01304.17 gi|530549787|ref|YP_008430343.1| - 0.024 14.6 0.5 0.07 13.1 0.4 1.9 2 0 0 2 2 2 0 Gas vesicles protein GVPc repeated domain FliS PF02561.14 gi|530549787|ref|YP_008430343.1| - 0.051 13.8 0.8 0.051 13.8 0.8 3.6 2 2 2 4 4 4 0 Flagellar protein FliS DUF1771 PF08590.10 gi|530549787|ref|YP_008430343.1| - 0.06 13.7 0.9 0.088 13.2 0.1 1.7 2 0 0 2 2 1 0 Domain of unknown function (DUF1771) LUC7 PF03194.15 gi|530549787|ref|YP_008430343.1| - 0.35 10.5 3.2 0.26 10.9 0.5 1.9 2 1 0 2 2 2 0 LUC7 N_terminus YtxC PF08812.11 gi|530549787|ref|YP_008430343.1| - 0.54 9.8 5.0 0.14 11.8 0.5 2.2 2 2 0 2 2 2 0 YtxC-like family PhoU PF01895.19 gi|530549787|ref|YP_008430343.1| - 0.59 10.6 11.8 6.7 7.2 0.4 3.3 2 2 1 3 3 3 0 PhoU domain PPR PF01535.20 gi|530549787|ref|YP_008430343.1| - 1.2 9.6 6.0 13 6.3 0.4 3.4 3 0 0 3 3 3 0 PPR repeat CENP-F_leu_zip PF10473.9 gi|530549787|ref|YP_008430343.1| - 1.9 8.5 15.8 0.3 11.1 9.1 2.1 2 0 0 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Phage_GP20 PF06810.11 gi|530549787|ref|YP_008430343.1| - 2.6 7.8 8.9 3.7 7.3 1.5 2.5 2 1 0 2 2 2 0 Phage minor structural protein GP20 FapA PF03961.13 gi|530549787|ref|YP_008430343.1| - 3.1 6.3 6.7 0.59 8.7 3.2 1.5 2 0 0 2 2 2 0 Flagellar Assembly Protein A Endonuclease_5 PF04493.14 gi|530549788|ref|YP_008430344.1| - 9.2e-41 139.7 0.0 2.1e-34 118.9 0.0 2.0 1 1 1 2 2 2 2 Endonuclease V CTP-dep_RFKase PF01982.16 gi|530549789|ref|YP_008430345.1| - 6.9e-39 132.7 0.0 1.1e-38 132.0 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF120 HTH_24 PF13412.6 gi|530549789|ref|YP_008430345.1| - 2.9e-06 26.8 0.1 4.9e-06 26.0 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Fe_dep_repress PF01325.19 gi|530549789|ref|YP_008430345.1| - 0.00013 22.0 0.2 0.00013 22.0 0.2 1.7 2 0 0 2 2 1 1 Iron dependent repressor, N-terminal DNA binding domain MarR_2 PF12802.7 gi|530549789|ref|YP_008430345.1| - 0.00014 21.7 0.0 0.00027 20.8 0.0 1.4 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|530549789|ref|YP_008430345.1| - 0.00062 19.6 0.2 0.0011 18.8 0.2 1.4 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|530549789|ref|YP_008430345.1| - 0.00087 19.7 0.1 0.0015 19.0 0.1 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.19 gi|530549789|ref|YP_008430345.1| - 0.00098 19.0 0.3 0.0024 17.7 0.3 1.7 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_34 PF13601.6 gi|530549789|ref|YP_008430345.1| - 0.0013 18.8 0.1 0.0083 16.3 0.0 2.2 3 0 0 3 3 3 1 Winged helix DNA-binding domain HTH_Crp_2 PF13545.6 gi|530549789|ref|YP_008430345.1| - 0.0014 18.5 0.0 0.0022 17.9 0.0 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain LexA_DNA_bind PF01726.16 gi|530549789|ref|YP_008430345.1| - 0.0042 16.8 1.9 0.26 11.1 0.1 3.1 3 0 0 3 3 3 1 LexA DNA binding domain HTH_11 PF08279.12 gi|530549789|ref|YP_008430345.1| - 0.0094 15.9 0.0 0.02 14.8 0.0 1.5 1 0 0 1 1 1 1 HTH domain FeoC PF09012.10 gi|530549789|ref|YP_008430345.1| - 0.017 15.2 0.2 0.029 14.5 0.2 1.3 1 0 0 1 1 1 0 FeoC like transcriptional regulator IF2_N PF04760.15 gi|530549789|ref|YP_008430345.1| - 0.019 14.8 0.3 0.044 13.6 0.3 1.6 1 0 0 1 1 1 0 Translation initiation factor IF-2, N-terminal region HTH_10 PF04967.12 gi|530549789|ref|YP_008430345.1| - 0.033 14.0 0.0 0.062 13.1 0.0 1.4 1 0 0 1 1 1 0 HTH DNA binding domain RepL PF05732.11 gi|530549789|ref|YP_008430345.1| - 0.043 13.3 0.0 0.062 12.7 0.0 1.2 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) HTH_IclR PF09339.10 gi|530549789|ref|YP_008430345.1| - 0.087 12.6 0.0 0.15 11.9 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|530549789|ref|YP_008430345.1| - 0.089 12.6 0.0 0.14 12.0 0.0 1.4 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_20 PF12840.7 gi|530549789|ref|YP_008430345.1| - 0.12 12.4 0.0 0.23 11.5 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Rrf2 PF02082.20 gi|530549789|ref|YP_008430345.1| - 0.15 12.4 0.1 0.25 11.7 0.1 1.3 1 0 0 1 1 1 0 Transcriptional regulator DUF104 PF01954.16 gi|530549789|ref|YP_008430345.1| - 0.16 12.5 3.6 1.1 9.7 0.4 2.7 2 0 0 2 2 2 0 Protein of unknown function DUF104 DUF4423 PF14394.6 gi|530549789|ref|YP_008430345.1| - 0.16 11.6 0.0 0.24 11.1 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) PRC PF05239.16 gi|530549791|ref|YP_008430347.1| - 8.7e-13 48.2 2.0 9.7e-13 48.0 2.0 1.1 1 0 0 1 1 1 1 PRC-barrel domain Imm-NTF2-2 PF15631.6 gi|530549791|ref|YP_008430347.1| - 0.086 13.1 0.9 9.2 6.6 0.2 2.2 1 1 1 2 2 2 0 NTF2 fold immunity protein TrkA_N PF02254.18 gi|530549792|ref|YP_008430348.1| - 1.3e-18 67.4 1.4 2.7e-18 66.3 0.2 2.2 2 0 0 2 2 2 1 TrkA-N domain DHHA1 PF02272.19 gi|530549792|ref|YP_008430348.1| - 1.1e-13 51.8 4.7 7.5e-13 49.1 0.1 3.0 2 1 1 3 3 3 1 DHHA1 domain DHH PF01368.20 gi|530549792|ref|YP_008430348.1| - 6.1e-10 39.2 0.0 1.5e-09 38.0 0.0 1.6 1 0 0 1 1 1 1 DHH family Sacchrp_dh_NADP PF03435.18 gi|530549792|ref|YP_008430348.1| - 7.6e-05 23.0 0.3 0.00023 21.4 0.3 1.9 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain NmrA PF05368.13 gi|530549792|ref|YP_008430348.1| - 0.0012 18.5 0.2 0.003 17.1 0.2 1.7 1 0 0 1 1 1 1 NmrA-like family DAO PF01266.24 gi|530549792|ref|YP_008430348.1| - 0.0056 16.3 0.2 0.01 15.4 0.2 1.6 1 1 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_7 PF13241.6 gi|530549792|ref|YP_008430348.1| - 0.012 16.1 0.1 0.044 14.2 0.0 2.1 1 1 1 2 2 2 0 Putative NAD(P)-binding PTPS PF01242.19 gi|530549792|ref|YP_008430348.1| - 0.034 14.1 0.8 6.3 6.8 0.1 2.7 2 1 0 2 2 2 0 6-pyruvoyl tetrahydropterin synthase AlaDh_PNT_C PF01262.21 gi|530549792|ref|YP_008430348.1| - 0.039 13.3 0.2 0.075 12.3 0.2 1.5 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain ApbA PF02558.16 gi|530549792|ref|YP_008430348.1| - 0.039 13.6 0.1 0.079 12.6 0.1 1.5 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA AdoHcyase_NAD PF00670.21 gi|530549792|ref|YP_008430348.1| - 0.043 13.9 2.6 0.13 12.4 0.2 2.7 3 0 0 3 3 3 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain F420_oxidored PF03807.17 gi|530549792|ref|YP_008430348.1| - 0.22 12.1 4.0 1.2 9.8 0.4 3.5 2 1 1 3 3 3 0 NADP oxidoreductase coenzyme F420-dependent Pyr_redox PF00070.27 gi|530549792|ref|YP_008430348.1| - 0.49 11.0 2.3 5.1 7.7 0.1 3.5 3 0 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase AAA_11 PF13086.6 gi|530549793|ref|YP_008430349.1| - 2.2 8.0 10.4 1.5 8.5 4.9 2.4 2 0 0 2 2 2 0 AAA domain EamA PF00892.20 gi|530549794|ref|YP_008430350.1| - 6.7e-46 155.9 43.6 5.4e-24 84.9 13.2 2.0 2 0 0 2 2 2 2 EamA-like transporter family TPT PF03151.16 gi|530549794|ref|YP_008430350.1| - 3.6e-05 23.3 15.8 0.0024 17.3 4.6 2.1 1 1 1 2 2 2 2 Triose-phosphate Transporter family RTX PF02382.15 gi|530549794|ref|YP_008430350.1| - 0.0038 17.0 0.9 0.006 16.3 0.9 1.2 1 0 0 1 1 1 1 N-terminal domain in RTX protein TMEM234 PF10639.9 gi|530549794|ref|YP_008430350.1| - 0.005 16.9 10.4 0.1 12.6 5.4 2.5 2 0 0 2 2 2 2 Putative transmembrane family 234 Topoisom_bac PF01131.20 gi|530549795|ref|YP_008430351.1| - 3.2e-51 174.6 0.0 2.8e-50 171.5 0.0 2.1 2 0 0 2 2 2 1 DNA topoisomerase Intein_splicing PF14890.6 gi|530549795|ref|YP_008430351.1| - 5.3e-22 78.2 0.8 1.4e-21 76.8 0.0 2.0 2 0 0 2 2 2 1 Intein splicing domain Toprim PF01751.22 gi|530549795|ref|YP_008430351.1| - 9.4e-20 70.8 0.0 4.3e-19 68.7 0.0 2.2 1 0 0 1 1 1 1 Toprim domain LAGLIDADG_3 PF14528.6 gi|530549795|ref|YP_008430351.1| - 9e-18 64.4 3.0 2e-14 53.7 0.0 3.3 3 1 0 3 3 3 2 LAGLIDADG-like domain Hom_end PF05204.14 gi|530549795|ref|YP_008430351.1| - 9.2e-05 22.6 0.0 0.0009 19.4 0.0 2.3 2 0 0 2 2 2 1 Homing endonuclease LAGLIDADG_1 PF00961.19 gi|530549795|ref|YP_008430351.1| - 0.41 11.7 0.1 0.41 11.7 0.1 2.7 3 0 0 3 3 3 0 LAGLIDADG endonuclease Topoisom_bac PF01131.20 gi|530549796|ref|YP_008430352.1| - 8.1e-68 229.3 0.5 8.1e-68 229.3 0.5 1.7 2 0 0 2 2 2 1 DNA topoisomerase zf-C4_Topoisom PF01396.19 gi|530549796|ref|YP_008430352.1| - 1.2e-15 57.0 10.2 4.5e-14 51.9 2.0 2.6 2 0 0 2 2 2 2 Topoisomerase DNA binding C4 zinc finger Zn-ribbon_8 PF09723.10 gi|530549796|ref|YP_008430352.1| - 0.00069 19.7 0.6 0.72 10.0 0.2 2.6 2 0 0 2 2 2 2 Zinc ribbon domain Lar_restr_allev PF14354.6 gi|530549796|ref|YP_008430352.1| - 0.0035 17.7 7.1 0.43 11.0 1.4 2.5 2 0 0 2 2 2 2 Restriction alleviation protein Lar Zn_Tnp_IS1595 PF12760.7 gi|530549796|ref|YP_008430352.1| - 0.01 15.8 3.8 1 9.4 0.4 2.4 2 0 0 2 2 2 0 Transposase zinc-ribbon domain DUF4364 PF14277.6 gi|530549796|ref|YP_008430352.1| - 0.015 15.1 1.0 0.015 15.1 1.0 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4364) DUF1272 PF06906.11 gi|530549796|ref|YP_008430352.1| - 0.053 13.6 2.6 0.084 13.0 0.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1272) zinc_ribbon_9 PF14369.6 gi|530549796|ref|YP_008430352.1| - 0.059 13.6 0.3 12 6.3 0.0 2.5 2 0 0 2 2 2 0 zinc-ribbon zf-ribbon_3 PF13248.6 gi|530549796|ref|YP_008430352.1| - 0.069 12.6 6.0 1.3 8.5 0.2 2.7 2 0 0 2 2 2 0 zinc-ribbon domain zf-IS66 PF13005.7 gi|530549796|ref|YP_008430352.1| - 0.08 13.4 6.4 1.6 9.2 0.1 3.3 3 0 0 3 3 3 0 zinc-finger binding domain of transposase IS66 AAA_11 PF13086.6 gi|530549796|ref|YP_008430352.1| - 0.15 11.8 6.2 0.23 11.2 6.2 1.2 1 0 0 1 1 1 0 AAA domain zf-TFIIB PF13453.6 gi|530549796|ref|YP_008430352.1| - 0.19 11.1 3.2 2.6 7.5 0.0 2.5 2 0 0 2 2 2 0 Transcription factor zinc-finger TF_Zn_Ribbon PF08271.12 gi|530549796|ref|YP_008430352.1| - 0.25 10.9 11.6 1.6 8.3 0.1 3.7 4 0 0 4 4 4 0 TFIIB zinc-binding Ogr_Delta PF04606.12 gi|530549796|ref|YP_008430352.1| - 0.28 11.2 0.1 0.28 11.2 0.1 2.8 2 1 0 2 2 2 0 Ogr/Delta-like zinc finger Na_Ca_ex_C PF16494.5 gi|530549796|ref|YP_008430352.1| - 0.36 11.3 9.9 0.21 12.0 5.3 2.4 2 1 0 2 2 2 0 C-terminal extension of sodium/calcium exchanger domain ADK_lid PF05191.14 gi|530549796|ref|YP_008430352.1| - 0.43 10.6 3.4 0.74 9.8 0.1 2.6 3 0 0 3 3 2 0 Adenylate kinase, active site lid zf-FPG_IleRS PF06827.14 gi|530549796|ref|YP_008430352.1| - 0.46 10.4 6.4 0.37 10.7 1.3 2.5 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS NFACT-C PF11923.8 gi|530549796|ref|YP_008430352.1| - 0.63 10.0 8.3 0.21 11.5 4.6 2.0 1 1 1 2 2 2 0 NFACT protein C-terminal domain zf-ISL3 PF14690.6 gi|530549796|ref|YP_008430352.1| - 0.98 10.1 5.7 18 6.1 1.1 3.0 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 YhfH PF14149.6 gi|530549796|ref|YP_008430352.1| - 1.3 9.1 4.0 3.6 7.6 0.1 2.7 2 0 0 2 2 2 0 YhfH-like protein Nop10p PF04135.12 gi|530549796|ref|YP_008430352.1| - 1.3 9.1 4.0 1e+02 3.0 0.0 3.7 4 0 0 4 4 4 0 Nucleolar RNA-binding protein, Nop10p family DNA_ligase_ZBD PF03119.16 gi|530549796|ref|YP_008430352.1| - 1.9 8.6 8.0 15 5.8 0.2 2.9 2 1 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Auto_anti-p27 PF06677.12 gi|530549796|ref|YP_008430352.1| - 2 8.6 7.1 1.4 9.2 0.4 2.7 2 1 1 3 3 3 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) FAD_binding_3 PF01494.19 gi|530549797|ref|YP_008430353.1| - 6.5e-17 61.8 2.0 1.1e-14 54.5 2.0 2.9 1 1 0 1 1 1 1 FAD binding domain Lycopene_cycl PF05834.12 gi|530549797|ref|YP_008430353.1| - 3.1e-14 52.8 0.0 4.9e-14 52.2 0.0 1.3 1 1 0 1 1 1 1 Lycopene cyclase protein FAD_binding_2 PF00890.24 gi|530549797|ref|YP_008430353.1| - 1.6e-10 40.7 0.5 1.2e-05 24.7 0.2 2.4 3 0 0 3 3 3 2 FAD binding domain FAD_oxidored PF12831.7 gi|530549797|ref|YP_008430353.1| - 2.9e-10 40.1 1.1 1.2e-09 38.1 0.4 2.2 3 1 0 3 3 3 1 FAD dependent oxidoreductase DAO PF01266.24 gi|530549797|ref|YP_008430353.1| - 3.6e-10 40.0 1.9 0.00027 20.6 0.6 2.4 1 1 0 2 2 2 2 FAD dependent oxidoreductase Trp_halogenase PF04820.14 gi|530549797|ref|YP_008430353.1| - 1.5e-07 30.7 0.3 0.00045 19.2 0.0 2.2 2 0 0 2 2 2 2 Tryptophan halogenase Pyr_redox_2 PF07992.14 gi|530549797|ref|YP_008430353.1| - 1.9e-06 27.3 3.9 0.00045 19.5 0.1 3.1 3 1 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|530549797|ref|YP_008430353.1| - 4.4e-05 23.6 0.9 0.00012 22.2 0.1 2.2 2 1 0 2 2 2 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.14 gi|530549797|ref|YP_008430353.1| - 0.00011 21.1 0.4 0.00067 18.5 0.1 2.0 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox PF00070.27 gi|530549797|ref|YP_008430353.1| - 0.0013 19.2 1.6 3.4 8.3 0.1 3.4 3 1 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|530549797|ref|YP_008430353.1| - 0.0046 16.2 2.8 0.013 14.8 0.2 2.5 3 0 0 3 3 3 1 Thi4 family GIDA PF01134.22 gi|530549797|ref|YP_008430353.1| - 0.0049 16.0 1.1 0.0099 15.0 0.2 1.9 2 0 0 2 2 2 1 Glucose inhibited division protein A 3HCDH_N PF02737.18 gi|530549797|ref|YP_008430353.1| - 0.011 15.6 0.4 0.027 14.4 0.1 1.8 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain SE PF08491.10 gi|530549797|ref|YP_008430353.1| - 0.061 12.4 0.0 0.13 11.3 0.0 1.5 2 0 0 2 2 2 0 Squalene epoxidase GDI PF00996.18 gi|530549797|ref|YP_008430353.1| - 0.066 11.7 0.1 0.25 9.8 0.0 1.8 2 0 0 2 2 2 0 GDP dissociation inhibitor DUF596 PF04591.12 gi|530549797|ref|YP_008430353.1| - 0.11 12.6 0.0 0.32 11.2 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function, DUF596 Fer4 PF00037.27 gi|530549798|ref|YP_008430354.1| - 6.6e-16 57.4 11.7 1.5e-08 34.1 1.2 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|530549798|ref|YP_008430354.1| - 1e-12 48.4 31.8 4.1e-07 30.5 12.2 2.0 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|530549798|ref|YP_008430354.1| - 6.2e-11 41.9 12.2 4.9e-07 29.6 2.5 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|530549798|ref|YP_008430354.1| - 5.2e-10 38.8 10.1 2.1e-05 24.3 1.1 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|530549798|ref|YP_008430354.1| - 2.3e-09 38.0 7.3 0.00027 21.8 2.1 2.1 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_10 PF13237.6 gi|530549798|ref|YP_008430354.1| - 8.1e-09 35.5 22.6 2.5e-06 27.5 12.0 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|530549798|ref|YP_008430354.1| - 1.2e-08 35.0 8.6 2e-08 34.2 8.7 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|530549798|ref|YP_008430354.1| - 5.2e-08 32.9 19.7 5.2e-06 26.5 11.1 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|530549798|ref|YP_008430354.1| - 8.2e-06 26.2 7.8 0.0058 17.0 1.0 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|530549798|ref|YP_008430354.1| - 2.7e-05 24.3 12.4 0.0016 18.8 3.6 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.6 gi|530549798|ref|YP_008430354.1| - 0.0001 22.5 6.3 0.00014 22.1 6.3 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|530549798|ref|YP_008430354.1| - 0.0007 20.1 12.3 0.088 13.4 4.3 2.2 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_17 PF13534.6 gi|530549798|ref|YP_008430354.1| - 0.0022 18.5 12.6 0.17 12.5 2.9 2.1 1 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|530549798|ref|YP_008430354.1| - 0.026 15.4 17.5 0.054 14.4 4.3 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_15 PF13459.6 gi|530549798|ref|YP_008430354.1| - 0.4 11.4 14.5 1.6 9.5 3.1 2.8 2 2 1 3 3 3 0 4Fe-4S single cluster domain Fer4_22 PF17179.4 gi|530549798|ref|YP_008430354.1| - 0.48 11.3 13.4 1.4 9.8 2.8 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain HTH_20 PF12840.7 gi|530549799|ref|YP_008430355.1| - 2.4e-10 40.3 0.0 2.2e-06 27.6 0.0 2.3 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_5 PF01022.20 gi|530549799|ref|YP_008430355.1| - 1.1e-07 31.6 3.6 4.3e-05 23.3 0.7 2.8 3 0 0 3 3 3 2 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|530549799|ref|YP_008430355.1| - 1.8e-05 24.2 0.2 0.0013 18.3 0.0 2.8 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding HTH_34 PF13601.6 gi|530549799|ref|YP_008430355.1| - 4.7e-05 23.5 0.3 0.28 11.4 0.0 2.5 2 0 0 2 2 2 2 Winged helix DNA-binding domain MarR PF01047.22 gi|530549799|ref|YP_008430355.1| - 0.00073 19.4 0.2 0.01 15.7 0.0 2.4 2 0 0 2 2 2 1 MarR family HTH_11 PF08279.12 gi|530549799|ref|YP_008430355.1| - 0.0034 17.3 1.4 0.15 12.0 0.0 2.6 2 0 0 2 2 2 1 HTH domain FliJ PF02050.16 gi|530549799|ref|YP_008430355.1| - 0.0052 17.0 1.5 0.0075 16.5 1.5 1.3 1 0 0 1 1 1 1 Flagellar FliJ protein PadR PF03551.14 gi|530549799|ref|YP_008430355.1| - 0.0067 16.4 0.2 0.02 14.8 0.0 1.8 2 0 0 2 2 2 1 Transcriptional regulator PadR-like family FUR PF01475.19 gi|530549799|ref|YP_008430355.1| - 0.0071 16.5 0.7 0.016 15.3 0.1 1.9 2 0 0 2 2 2 1 Ferric uptake regulator family HTH_27 PF13463.6 gi|530549799|ref|YP_008430355.1| - 0.02 15.4 0.6 1.1 9.9 0.0 2.7 3 0 0 3 3 3 0 Winged helix DNA-binding domain MarR_2 PF12802.7 gi|530549799|ref|YP_008430355.1| - 0.1 12.5 0.0 3.8 7.5 0.0 2.3 2 0 0 2 2 2 0 MarR family SlyX PF04102.12 gi|530549799|ref|YP_008430355.1| - 0.18 12.5 1.6 3.4 8.4 0.5 2.3 2 0 0 2 2 2 0 SlyX Thioredoxin_3 PF13192.6 gi|530549800|ref|YP_008430356.1| - 3.4e-24 84.7 0.0 2.1e-14 53.3 0.0 2.3 2 0 0 2 2 2 2 Thioredoxin domain ABC_transp_aux PF09822.9 gi|530549800|ref|YP_008430356.1| - 4.9e-13 49.1 0.0 2e-05 24.2 0.0 2.0 2 0 0 2 2 2 2 ABC-type uncharacterized transport system Glutaredoxin PF00462.24 gi|530549800|ref|YP_008430356.1| - 4.5e-11 42.8 2.0 2e-05 24.7 0.2 2.8 2 1 0 2 2 2 2 Glutaredoxin Thioredoxin PF00085.20 gi|530549800|ref|YP_008430356.1| - 1.2e-10 41.3 0.2 0.00058 19.8 0.0 2.1 2 0 0 2 2 2 2 Thioredoxin Thioredoxin_2 PF13098.6 gi|530549800|ref|YP_008430356.1| - 5.5e-10 39.7 3.3 0.00011 22.6 0.3 4.1 3 1 0 3 3 3 2 Thioredoxin-like domain Thioredoxin_9 PF14595.6 gi|530549800|ref|YP_008430356.1| - 2.1e-07 30.8 0.1 0.0049 16.6 0.1 2.3 2 1 0 2 2 2 2 Thioredoxin DUF836 PF05768.14 gi|530549800|ref|YP_008430356.1| - 6e-06 26.6 0.6 0.00033 21.0 0.2 2.4 2 1 0 2 2 2 1 Glutaredoxin-like domain (DUF836) TraF PF13728.6 gi|530549800|ref|YP_008430356.1| - 0.00067 19.5 0.1 0.07 12.9 0.0 2.5 2 1 0 2 2 2 1 F plasmid transfer operon protein Thioredoxin_8 PF13905.6 gi|530549800|ref|YP_008430356.1| - 0.014 15.7 0.1 3.1 8.2 0.0 3.1 2 1 1 3 3 3 0 Thioredoxin-like Methyltrn_RNA_2 PF04013.12 gi|530549801|ref|YP_008430357.1| - 8e-49 166.0 0.0 9.5e-49 165.8 0.0 1.0 1 0 0 1 1 1 1 Putative SAM-dependent RNA methyltransferase Amidohydro_1 PF01979.20 gi|530549803|ref|YP_008430359.1| - 4.3e-42 144.7 0.0 5.4e-42 144.3 0.0 1.0 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|530549803|ref|YP_008430359.1| - 0.18 11.2 1.2 0.52 9.7 0.3 2.1 1 1 0 2 2 2 0 Amidohydrolase family tRNA-synt_2 PF00152.20 gi|530549805|ref|YP_008430361.1| - 2.5e-85 286.3 0.0 3.1e-85 286.0 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.25 gi|530549805|ref|YP_008430361.1| - 6.3e-15 54.9 1.0 1.9e-14 53.4 1.2 1.7 2 0 0 2 2 2 1 OB-fold nucleic acid binding domain HycI PF01750.18 gi|530549806|ref|YP_008430362.1| - 4.3e-19 68.6 0.1 6.4e-19 68.1 0.1 1.2 1 0 0 1 1 1 1 Hydrogenase maturation protease ParA PF10609.9 gi|530549807|ref|YP_008430363.1| - 1.7e-57 194.7 0.1 9.7e-57 192.2 0.1 1.8 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|530549807|ref|YP_008430363.1| - 8.5e-17 61.4 0.0 1.2e-16 60.9 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|530549807|ref|YP_008430363.1| - 1.1e-11 45.0 0.1 1e-07 32.1 0.0 2.2 2 0 0 2 2 2 2 AAA domain ArsA_ATPase PF02374.15 gi|530549807|ref|YP_008430363.1| - 1.3e-07 31.1 6.4 7.8e-06 25.3 0.4 2.9 2 1 1 3 3 3 2 Anion-transporting ATPase Fer4_NifH PF00142.18 gi|530549807|ref|YP_008430363.1| - 1.4e-07 31.3 0.0 0.011 15.2 0.0 2.2 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family MipZ PF09140.11 gi|530549807|ref|YP_008430363.1| - 1.5e-06 27.7 0.0 2.7e-06 26.8 0.0 1.5 1 1 0 1 1 1 1 ATPase MipZ AAA_26 PF13500.6 gi|530549807|ref|YP_008430363.1| - 3.5e-06 27.0 2.1 0.0027 17.6 0.0 2.1 2 0 0 2 2 2 2 AAA domain MeaB PF03308.16 gi|530549807|ref|YP_008430363.1| - 0.048 12.6 0.2 0.074 12.0 0.2 1.2 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB Sigma_reg_C PF13791.6 gi|530549807|ref|YP_008430363.1| - 0.083 13.1 0.0 0.13 12.5 0.0 1.4 1 0 0 1 1 1 0 Sigma factor regulator C-terminal CLP1_P PF16575.5 gi|530549807|ref|YP_008430363.1| - 0.088 12.6 0.1 0.22 11.3 0.1 1.7 2 0 0 2 2 2 0 mRNA cleavage and polyadenylation factor CLP1 P-loop RsgA_GTPase PF03193.16 gi|530549807|ref|YP_008430363.1| - 0.15 12.0 0.5 8.2 6.3 0.1 2.1 2 0 0 2 2 2 0 RsgA GTPase NTPase_1 PF03266.15 gi|530549807|ref|YP_008430363.1| - 0.76 9.7 4.9 6.7 6.6 0.5 2.6 3 0 0 3 3 3 0 NTPase HypA PF01155.19 gi|530549808|ref|YP_008430364.1| - 6.7e-27 93.7 0.2 7.7e-27 93.5 0.2 1.0 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA TF_Zn_Ribbon PF08271.12 gi|530549808|ref|YP_008430364.1| - 0.00022 20.7 1.4 0.12 11.9 0.0 2.3 2 0 0 2 2 2 2 TFIIB zinc-binding Trm112p PF03966.16 gi|530549808|ref|YP_008430364.1| - 0.00055 20.5 0.0 0.09 13.4 0.0 2.2 2 0 0 2 2 2 1 Trm112p-like protein Zn_Tnp_IS1595 PF12760.7 gi|530549808|ref|YP_008430364.1| - 0.0012 18.7 0.2 0.53 10.3 0.1 2.2 2 0 0 2 2 2 1 Transposase zinc-ribbon domain DUF2318 PF10080.9 gi|530549808|ref|YP_008430364.1| - 0.0037 17.4 0.1 0.12 12.5 0.0 2.2 2 0 0 2 2 2 1 Predicted membrane protein (DUF2318) Lar_restr_allev PF14354.6 gi|530549808|ref|YP_008430364.1| - 0.008 16.5 0.1 0.83 10.1 0.0 2.2 2 0 0 2 2 2 1 Restriction alleviation protein Lar zf-ISL3 PF14690.6 gi|530549808|ref|YP_008430364.1| - 0.01 16.5 0.2 7.2 7.4 0.1 2.4 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 TFIIS_C PF01096.18 gi|530549808|ref|YP_008430364.1| - 0.012 15.5 4.0 0.74 9.7 1.1 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) MCM_OB PF17207.3 gi|530549808|ref|YP_008430364.1| - 0.012 15.4 0.0 0.018 14.9 0.0 1.3 1 0 0 1 1 1 0 MCM OB domain zf-ZPR1 PF03367.13 gi|530549808|ref|YP_008430364.1| - 0.022 14.6 0.9 0.089 12.6 0.5 2.1 1 1 1 2 2 2 0 ZPR1 zinc-finger domain zf-ribbon_3 PF13248.6 gi|530549808|ref|YP_008430364.1| - 0.027 13.9 0.8 2.5 7.6 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|530549808|ref|YP_008430364.1| - 0.03 14.4 4.6 0.95 9.6 4.6 2.3 1 1 0 1 1 1 0 Zinc ribbon domain zinc_ribbon_2 PF13240.6 gi|530549808|ref|YP_008430364.1| - 0.037 13.8 4.0 3 7.7 0.4 2.4 2 0 0 2 2 2 0 zinc-ribbon domain PhnA_Zn_Ribbon PF08274.12 gi|530549808|ref|YP_008430364.1| - 0.04 13.9 0.9 10 6.2 0.0 2.4 2 0 0 2 2 2 0 PhnA Zinc-Ribbon KGK PF08872.10 gi|530549808|ref|YP_008430364.1| - 0.045 14.2 1.3 0.073 13.6 1.1 1.4 1 1 0 1 1 1 0 KGK domain DNA_RNApol_7kD PF03604.13 gi|530549808|ref|YP_008430364.1| - 0.048 13.3 0.4 5.6 6.7 0.0 2.5 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zinc_ribbon_4 PF13717.6 gi|530549808|ref|YP_008430364.1| - 0.056 13.4 1.1 3.3 7.7 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain eIF-5_eIF-2B PF01873.17 gi|530549808|ref|YP_008430364.1| - 0.073 13.0 0.5 0.97 9.3 0.0 2.2 2 1 0 2 2 2 0 Domain found in IF2B/IF5 DpnI PF06044.12 gi|530549808|ref|YP_008430364.1| - 0.099 12.3 1.2 0.5 10.0 0.2 2.1 1 1 1 2 2 2 0 Dam-replacing family zf-3CxxC PF13695.6 gi|530549808|ref|YP_008430364.1| - 0.1 13.1 0.4 0.22 12.0 0.4 1.5 1 1 0 1 1 1 0 Zinc-binding domain OrfB_Zn_ribbon PF07282.11 gi|530549808|ref|YP_008430364.1| - 0.1 12.5 0.2 5.8 6.9 0.0 2.2 2 0 0 2 2 2 0 Putative transposase DNA-binding domain zf-RRN7 PF11781.8 gi|530549808|ref|YP_008430364.1| - 0.15 11.8 3.9 1 9.1 0.1 2.5 3 0 0 3 3 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 zf-HYPF PF07503.12 gi|530549808|ref|YP_008430364.1| - 0.16 11.8 0.7 2.2 8.1 0.1 2.2 2 0 0 2 2 2 0 HypF finger DUF1610 PF07754.11 gi|530549808|ref|YP_008430364.1| - 0.19 11.7 3.4 5 7.2 0.1 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) DUF35_N PF12172.8 gi|530549808|ref|YP_008430364.1| - 0.28 11.1 3.8 0.51 10.3 0.2 2.2 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Aminotran_3 PF00202.21 gi|530549809|ref|YP_008430365.1| - 5.5e-100 334.9 0.0 6.8e-100 334.6 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Na_Ala_symp PF01235.17 gi|530549810|ref|YP_008430366.1| - 3.3e-128 428.4 37.4 6e-92 309.0 20.7 2.1 1 1 1 2 2 2 2 Sodium:alanine symporter family SPASM PF13186.6 gi|530549811|ref|YP_008430367.1| - 2.3e-17 63.3 0.4 6.8e-17 61.8 0.4 1.9 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Radical_SAM PF04055.21 gi|530549811|ref|YP_008430367.1| - 3.1e-17 63.4 0.2 4.5e-17 62.9 0.2 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|530549811|ref|YP_008430367.1| - 2.6e-09 37.2 0.0 5.7e-09 36.1 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|530549811|ref|YP_008430367.1| - 8.2e-09 35.9 0.1 1.9e-07 31.5 0.0 2.6 3 0 0 3 3 3 1 4Fe-4S single cluster domain B12-binding PF02310.19 gi|530549811|ref|YP_008430367.1| - 0.17 12.0 0.1 4.2 7.4 0.0 2.2 1 1 1 2 2 2 0 B12 binding domain ThiS PF02597.20 gi|530549812|ref|YP_008430368.1| - 1.2e-19 70.7 0.3 1.3e-19 70.5 0.3 1.0 1 0 0 1 1 1 1 ThiS family DUF348 PF03990.14 gi|530549812|ref|YP_008430368.1| - 0.0018 18.0 1.0 1 9.2 0.0 2.6 2 1 1 3 3 3 2 G5-linked-Ubiquitin-like domain Urm1 PF09138.11 gi|530549812|ref|YP_008430368.1| - 0.0018 18.6 0.0 0.002 18.5 0.0 1.2 1 0 0 1 1 1 1 Urm1 (Ubiquitin related modifier) TGS PF02824.21 gi|530549812|ref|YP_008430368.1| - 0.016 15.2 0.1 0.038 14.0 0.1 1.7 1 1 1 2 2 2 0 TGS domain DUF1043 PF06295.12 gi|530549812|ref|YP_008430368.1| - 0.057 13.4 0.2 0.072 13.1 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1043) Transposase_mut PF00872.18 gi|530549812|ref|YP_008430368.1| - 0.059 12.2 0.0 0.2 10.5 0.0 1.7 1 1 0 1 1 1 0 Transposase, Mutator family tRNA_anti-codon PF01336.25 gi|530549812|ref|YP_008430368.1| - 0.11 12.5 0.3 2.7 8.0 0.1 2.4 1 1 1 2 2 2 0 OB-fold nucleic acid binding domain AFOR_C PF01314.18 gi|530549813|ref|YP_008430369.1| - 5.9e-151 502.8 0.0 7.4e-151 502.5 0.0 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.15 gi|530549813|ref|YP_008430369.1| - 5e-91 303.9 0.2 7.4e-91 303.4 0.2 1.3 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain NTP_transf_3 PF12804.7 gi|530549814|ref|YP_008430370.1| - 3.5e-14 53.5 0.0 5.7e-14 52.8 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain NTP_transferase PF00483.23 gi|530549814|ref|YP_008430370.1| - 3.6e-13 49.7 0.0 2.7e-12 46.8 0.0 2.0 1 1 0 1 1 1 1 Nucleotidyl transferase CDP-OH_P_transf PF01066.21 gi|530549814|ref|YP_008430370.1| - 2e-09 38.1 2.3 1e-08 35.8 0.1 2.8 3 1 0 3 3 3 1 CDP-alcohol phosphatidyltransferase IspD PF01128.19 gi|530549814|ref|YP_008430370.1| - 3.2e-05 23.8 0.0 7.4e-05 22.6 0.0 1.6 2 0 0 2 2 2 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Peptidase_M32 PF02074.15 gi|530549815|ref|YP_008430371.1| - 1.5e-170 568.2 0.0 1.7e-170 568.0 0.0 1.0 1 0 0 1 1 1 1 Carboxypeptidase Taq (M32) metallopeptidase Peptidase_M3 PF01432.20 gi|530549815|ref|YP_008430371.1| - 0.08 12.2 1.5 1 8.5 0.2 2.7 3 0 0 3 3 3 0 Peptidase family M3 ASCH PF04266.14 gi|530549816|ref|YP_008430372.1| - 2.7e-16 60.1 1.3 3.4e-16 59.8 1.3 1.1 1 0 0 1 1 1 1 ASCH domain S4_2 PF13275.6 gi|530549816|ref|YP_008430372.1| - 0.0056 16.5 0.5 0.0095 15.7 0.5 1.4 1 0 0 1 1 1 1 S4 domain FAD_binding_3 PF01494.19 gi|530549817|ref|YP_008430373.1| - 2.6e-15 56.5 0.5 4e-11 42.8 0.2 2.9 2 1 0 2 2 2 2 FAD binding domain NAD_binding_8 PF13450.6 gi|530549817|ref|YP_008430373.1| - 2.2e-06 27.8 0.9 0.00054 20.1 0.2 2.9 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.17 gi|530549817|ref|YP_008430373.1| - 7.3e-06 25.4 1.7 2.4e-05 23.7 0.4 2.0 1 1 1 2 2 2 1 Thi4 family Trp_halogenase PF04820.14 gi|530549817|ref|YP_008430373.1| - 2.8e-05 23.2 3.1 0.014 14.3 0.1 2.9 1 1 1 2 2 2 2 Tryptophan halogenase HI0933_like PF03486.14 gi|530549817|ref|YP_008430373.1| - 0.00016 20.5 0.3 0.0003 19.6 0.3 1.4 1 0 0 1 1 1 1 HI0933-like protein Lycopene_cycl PF05834.12 gi|530549817|ref|YP_008430373.1| - 0.00032 19.9 0.0 0.00077 18.6 0.0 1.6 2 0 0 2 2 2 1 Lycopene cyclase protein DAO PF01266.24 gi|530549817|ref|YP_008430373.1| - 0.00034 20.3 2.0 0.02 14.5 1.4 2.3 1 1 0 2 2 2 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|530549817|ref|YP_008430373.1| - 0.017 14.4 0.9 0.064 12.5 0.9 1.9 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|530549817|ref|YP_008430373.1| - 0.12 11.7 0.1 0.17 11.2 0.1 1.2 1 0 0 1 1 1 0 FAD dependent oxidoreductase Peptidase_C15 PF01470.17 gi|530549818|ref|YP_008430374.1| - 3e-80 269.2 0.8 3.3e-80 269.1 0.8 1.0 1 0 0 1 1 1 1 Pyroglutamyl peptidase Pox_ser-thr_kin PF05445.11 gi|530549818|ref|YP_008430374.1| - 0.19 10.7 0.0 0.2 10.6 0.0 1.1 1 0 0 1 1 1 0 Poxvirus serine/threonine protein kinase tRNA-synt_2b PF00587.25 gi|530549819|ref|YP_008430375.1| - 8.7e-23 81.2 0.2 2e-22 80.0 0.0 1.6 2 0 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.20 gi|530549819|ref|YP_008430375.1| - 2.3e-22 79.0 0.7 5.2e-22 77.8 0.7 1.7 1 0 0 1 1 1 1 Anticodon binding domain ProRS-C_1 PF09180.11 gi|530549819|ref|YP_008430375.1| - 2.2e-15 56.6 0.9 2e-14 53.5 0.9 2.3 2 0 0 2 2 2 1 Prolyl-tRNA synthetase, C-terminal ProRS-C_2 PF09181.10 gi|530549819|ref|YP_008430375.1| - 0.0012 18.9 0.3 0.01 15.9 0.1 2.6 2 1 0 2 2 2 1 Prolyl-tRNA synthetase, C-terminal TIR_2 PF13676.6 gi|530549819|ref|YP_008430375.1| - 0.0032 18.1 0.0 0.011 16.3 0.0 2.0 1 0 0 1 1 1 1 TIR domain YhfH PF14149.6 gi|530549819|ref|YP_008430375.1| - 6.9 6.7 9.8 0.84 9.7 0.6 3.1 3 0 0 3 3 3 0 YhfH-like protein 2-Hacid_dh_C PF02826.19 gi|530549820|ref|YP_008430376.1| - 1.5e-54 184.0 0.0 2.3e-54 183.5 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|530549820|ref|YP_008430376.1| - 4.6e-34 117.0 0.0 5.3e-34 116.8 0.0 1.0 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.15 gi|530549820|ref|YP_008430376.1| - 1.4e-08 35.1 0.0 2.4e-08 34.3 0.0 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 gi|530549820|ref|YP_008430376.1| - 2.6e-08 34.3 0.0 5.2e-08 33.4 0.0 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent IlvN PF07991.12 gi|530549820|ref|YP_008430376.1| - 5.1e-06 26.2 0.0 1.4e-05 24.7 0.0 1.7 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain NAD_Gly3P_dh_N PF01210.23 gi|530549820|ref|YP_008430376.1| - 0.0004 20.4 0.1 0.023 14.7 0.1 2.4 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Shikimate_DH PF01488.20 gi|530549820|ref|YP_008430376.1| - 0.0029 17.7 0.0 0.0074 16.4 0.0 1.6 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase Rossmann-like PF10727.9 gi|530549820|ref|YP_008430376.1| - 0.023 14.6 0.0 0.05 13.5 0.0 1.5 1 0 0 1 1 1 0 Rossmann-like domain AdoHcyase_NAD PF00670.21 gi|530549820|ref|YP_008430376.1| - 0.035 14.2 0.0 0.18 11.8 0.0 2.1 1 1 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain DpaA_N PF16924.5 gi|530549820|ref|YP_008430376.1| - 0.052 13.6 0.0 0.14 12.2 0.0 1.7 1 0 0 1 1 1 0 Dipicolinate synthase subunit A N-terminal domain NAD_binding_7 PF13241.6 gi|530549820|ref|YP_008430376.1| - 0.082 13.3 0.0 0.32 11.5 0.0 1.9 2 0 0 2 2 2 0 Putative NAD(P)-binding 2-Hacid_dh_C PF02826.19 gi|530549821|ref|YP_008430377.1| - 3e-72 241.7 0.0 9.9e-72 240.0 0.0 1.8 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|530549821|ref|YP_008430377.1| - 5.7e-39 132.9 0.2 6.5e-39 132.7 0.2 1.0 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.15 gi|530549821|ref|YP_008430377.1| - 1.3e-05 25.4 0.1 9.1e-05 22.7 0.0 2.2 2 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase IlvN PF07991.12 gi|530549821|ref|YP_008430377.1| - 0.0005 19.7 0.0 0.0039 16.8 0.0 2.3 2 1 1 3 3 3 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain AlaDh_PNT_C PF01262.21 gi|530549821|ref|YP_008430377.1| - 0.00077 18.8 0.0 0.0024 17.2 0.0 1.8 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain NmrA PF05368.13 gi|530549821|ref|YP_008430377.1| - 0.00084 19.0 0.3 0.0019 17.8 0.3 1.6 1 0 0 1 1 1 1 NmrA-like family AdoHcyase_NAD PF00670.21 gi|530549821|ref|YP_008430377.1| - 0.0039 17.3 0.0 0.011 15.8 0.0 1.7 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain XdhC_C PF13478.6 gi|530549821|ref|YP_008430377.1| - 0.012 16.1 0.0 0.041 14.4 0.0 1.9 2 0 0 2 2 2 0 XdhC Rossmann domain 3HCDH_N PF02737.18 gi|530549821|ref|YP_008430377.1| - 0.028 14.3 0.2 0.19 11.6 0.0 2.3 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_10 PF13460.6 gi|530549821|ref|YP_008430377.1| - 0.04 13.8 0.3 0.13 12.1 0.1 1.9 1 1 0 1 1 1 0 NAD(P)H-binding Nitro_FeMo-Co PF02579.17 gi|530549821|ref|YP_008430377.1| - 0.047 14.0 1.8 4.6 7.6 0.1 3.2 3 0 0 3 3 3 0 Dinitrogenase iron-molybdenum cofactor UDPG_MGDP_dh_C PF03720.15 gi|530549821|ref|YP_008430377.1| - 0.12 12.8 0.0 1.2 9.5 0.0 2.3 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain PhoU_div PF01865.16 gi|530549822|ref|YP_008430378.1| - 3.5e-46 157.2 6.2 3.9e-46 157.1 6.2 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF47 PhoU PF01895.19 gi|530549822|ref|YP_008430378.1| - 6.2e-05 23.4 9.7 0.053 14.0 1.8 2.4 2 0 0 2 2 2 2 PhoU domain LUC7 PF03194.15 gi|530549822|ref|YP_008430378.1| - 0.00039 20.2 3.3 0.0026 17.5 3.3 2.0 1 1 0 1 1 1 1 LUC7 N_terminus Spectrin PF00435.21 gi|530549822|ref|YP_008430378.1| - 0.0023 18.4 0.7 0.42 11.1 0.0 2.2 2 0 0 2 2 2 1 Spectrin repeat PCI PF01399.27 gi|530549822|ref|YP_008430378.1| - 0.005 17.3 0.0 0.015 15.8 0.0 1.8 1 0 0 1 1 1 1 PCI domain BAR_2 PF10455.9 gi|530549822|ref|YP_008430378.1| - 0.0067 15.6 1.8 0.014 14.6 1.5 1.5 1 1 1 2 2 2 1 Bin/amphiphysin/Rvs domain for vesicular trafficking FCD PF07729.12 gi|530549822|ref|YP_008430378.1| - 0.0081 16.6 5.2 2.1 8.8 0.0 3.4 4 0 0 4 4 3 1 FCD domain CCDC106 PF15794.5 gi|530549822|ref|YP_008430378.1| - 0.015 15.0 0.1 0.03 14.1 0.1 1.5 1 0 0 1 1 1 0 Coiled-coil domain-containing protein 106 DUF948 PF06103.11 gi|530549822|ref|YP_008430378.1| - 0.055 13.7 2.6 1.1 9.5 0.3 3.2 3 1 0 3 3 3 0 Bacterial protein of unknown function (DUF948) Rnk_N PF14760.6 gi|530549822|ref|YP_008430378.1| - 0.067 13.7 6.5 0.1 13.1 0.1 3.2 2 1 0 2 2 2 0 Rnk N-terminus MethyltransfD12 PF02086.15 gi|530549822|ref|YP_008430378.1| - 0.1 12.3 0.5 0.21 11.2 0.5 1.5 1 0 0 1 1 1 0 D12 class N6 adenine-specific DNA methyltransferase Mis12 PF05859.12 gi|530549822|ref|YP_008430378.1| - 0.11 12.6 5.5 3.6 7.7 0.2 3.5 2 1 0 3 3 3 0 Mis12 protein KfrA_N PF11740.8 gi|530549822|ref|YP_008430378.1| - 0.16 12.7 8.5 0.33 11.6 0.1 2.9 3 1 0 3 3 2 0 Plasmid replication region DNA-binding N-term bZIP_2 PF07716.15 gi|530549822|ref|YP_008430378.1| - 0.28 11.3 5.4 0.15 12.2 2.4 2.0 2 0 0 2 2 2 0 Basic region leucine zipper GlutR_dimer PF00745.20 gi|530549822|ref|YP_008430378.1| - 0.32 11.5 6.6 0.11 12.9 0.8 2.7 2 2 0 2 2 2 0 Glutamyl-tRNAGlu reductase, dimerisation domain 4HB_MCP_1 PF12729.7 gi|530549822|ref|YP_008430378.1| - 0.37 10.3 7.6 2 8.0 0.3 2.4 2 0 0 2 2 2 0 Four helix bundle sensory module for signal transduction DegS PF05384.11 gi|530549822|ref|YP_008430378.1| - 0.51 9.8 7.0 1.2 8.6 0.4 2.6 3 1 0 3 3 3 0 Sensor protein DegS DUF1451 PF07295.11 gi|530549822|ref|YP_008430378.1| - 2.4 8.2 8.5 1.7 8.7 2.0 2.8 2 2 0 2 2 2 0 Zinc-ribbon containing domain ApbA PF02558.16 gi|530549823|ref|YP_008430379.1| - 2.1e-37 128.1 0.0 4.1e-37 127.2 0.0 1.5 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA ApbA_C PF08546.11 gi|530549823|ref|YP_008430379.1| - 1e-31 109.7 0.1 1.7e-31 109.0 0.1 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA C terminal Pyr_redox PF00070.27 gi|530549823|ref|YP_008430379.1| - 0.00082 19.9 0.2 0.0022 18.5 0.2 1.7 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_Gly3P_dh_N PF01210.23 gi|530549823|ref|YP_008430379.1| - 0.00094 19.2 0.1 0.0035 17.3 0.0 2.0 2 1 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus UDPG_MGDP_dh_N PF03721.14 gi|530549823|ref|YP_008430379.1| - 0.014 15.0 0.1 0.024 14.2 0.1 1.4 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Pyr_redox_2 PF07992.14 gi|530549823|ref|YP_008430379.1| - 0.03 13.6 0.1 0.059 12.6 0.1 1.5 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase TrkA_N PF02254.18 gi|530549823|ref|YP_008430379.1| - 0.09 13.0 0.0 0.18 12.1 0.0 1.5 1 0 0 1 1 1 0 TrkA-N domain Gram_pos_anchor PF00746.21 gi|530549824|ref|YP_008430380.1| - 0.041 13.8 6.4 1.3 9.0 0.4 3.4 3 0 0 3 3 3 0 LPXTG cell wall anchor motif DUF4491 PF14898.6 gi|530549824|ref|YP_008430380.1| - 3 8.3 7.7 15 6.1 0.5 3.0 2 1 1 3 3 3 0 Domain of unknown function (DUF4491) SpoU_methylase PF00588.19 gi|564287495|ref|YP_008430381.3| - 1.3e-37 129.1 0.0 1.8e-37 128.7 0.0 1.2 1 0 0 1 1 1 1 SpoU rRNA Methylase family Methyltrn_RNA_4 PF09936.9 gi|564287495|ref|YP_008430381.3| - 0.0052 16.7 0.0 0.15 11.9 0.0 2.2 1 1 0 1 1 1 1 SAM-dependent RNA methyltransferase DNA_binding_1 PF01035.20 gi|530549826|ref|YP_008430382.1| - 2.9e-25 88.2 0.0 4.4e-25 87.6 0.0 1.3 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain DUF1938 PF09153.10 gi|530549826|ref|YP_008430382.1| - 1e-23 83.2 0.9 9.6e-23 80.1 0.5 2.0 1 1 1 2 2 2 1 Domain of unknown function (DUF1938) UPF0728 PF15092.6 gi|530549826|ref|YP_008430382.1| - 0.051 13.4 0.1 0.097 12.5 0.1 1.6 1 1 0 1 1 1 0 Uncharacterised protein family UPF0728 Pyr_excise PF03013.14 gi|530549826|ref|YP_008430382.1| - 0.084 12.8 0.0 0.12 12.4 0.0 1.2 1 0 0 1 1 1 0 Pyrimidine dimer DNA glycosylase EPSP_synthase PF00275.20 gi|530549826|ref|YP_008430382.1| - 0.13 10.9 0.0 0.18 10.5 0.0 1.1 1 0 0 1 1 1 0 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) TPR_2 PF07719.17 gi|530549827|ref|YP_008430383.1| - 2.6e-09 36.5 48.8 0.00062 19.7 1.5 8.1 6 3 2 8 8 8 5 Tetratricopeptide repeat TPR_15 PF13429.6 gi|530549827|ref|YP_008430383.1| - 7.5e-09 35.2 20.4 7.2e-07 28.7 8.7 3.5 1 1 3 4 4 4 3 Tetratricopeptide repeat TPR_6 PF13174.6 gi|530549827|ref|YP_008430383.1| - 1.7e-08 34.6 33.0 0.072 13.8 0.4 7.4 5 2 1 6 6 6 4 Tetratricopeptide repeat TPR_8 PF13181.6 gi|530549827|ref|YP_008430383.1| - 2.6e-07 30.3 40.9 0.018 15.2 0.7 6.7 5 1 0 6 6 6 4 Tetratricopeptide repeat TPR_16 PF13432.6 gi|530549827|ref|YP_008430383.1| - 3e-05 24.6 27.4 0.18 12.5 3.2 5.9 3 3 3 6 6 6 4 Tetratricopeptide repeat SNAP PF14938.6 gi|530549827|ref|YP_008430383.1| - 0.00026 20.5 27.8 0.00026 20.5 27.8 2.5 1 1 1 2 2 2 1 Soluble NSF attachment protein, SNAP TPR_1 PF00515.28 gi|530549827|ref|YP_008430383.1| - 0.00033 20.4 36.1 0.071 13.0 1.1 6.9 5 2 2 7 7 7 3 Tetratricopeptide repeat TPR_19 PF14559.6 gi|530549827|ref|YP_008430383.1| - 0.0049 17.4 20.7 0.23 12.0 1.5 4.2 2 1 2 4 4 4 3 Tetratricopeptide repeat TPR_12 PF13424.6 gi|530549827|ref|YP_008430383.1| - 0.0054 17.0 2.2 0.0054 17.0 2.2 5.1 1 1 4 5 5 5 3 Tetratricopeptide repeat TPR_14 PF13428.6 gi|530549827|ref|YP_008430383.1| - 0.011 16.5 25.8 0.61 11.1 0.3 6.4 1 1 5 7 7 7 0 Tetratricopeptide repeat TPR_9 PF13371.6 gi|530549827|ref|YP_008430383.1| - 0.027 14.6 7.7 3.3 7.9 1.0 4.9 2 2 2 5 5 5 0 Tetratricopeptide repeat TPR_7 PF13176.6 gi|530549827|ref|YP_008430383.1| - 0.05 13.7 32.9 0.099 12.7 1.8 7.5 5 2 1 6 6 6 0 Tetratricopeptide repeat DUF4316 PF14195.6 gi|530549827|ref|YP_008430383.1| - 0.22 11.3 3.7 0.87 9.4 0.2 2.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4316) Clathrin PF00637.20 gi|530549827|ref|YP_008430383.1| - 0.23 11.4 13.5 0.5 10.2 2.7 3.5 1 1 3 4 4 4 0 Region in Clathrin and VPS TPR_10 PF13374.6 gi|530549827|ref|YP_008430383.1| - 0.77 9.7 16.5 0.089 12.7 1.1 4.5 2 1 0 3 3 3 0 Tetratricopeptide repeat DUF883 PF05957.13 gi|530549827|ref|YP_008430383.1| - 2.4 8.8 6.0 19 6.0 0.7 3.3 2 1 0 2 2 2 0 Bacterial protein of unknown function (DUF883) NAC PF01849.18 gi|530549828|ref|YP_008430384.1| - 1.6e-14 53.6 5.6 1.6e-14 53.6 4.3 1.7 1 1 1 2 2 2 1 NAC domain DUF2089 PF09862.9 gi|530549828|ref|YP_008430384.1| - 0.03 14.4 2.6 2.4 8.2 1.0 2.2 1 1 0 2 2 2 0 Protein of unknown function (DUF2089) UBA_4 PF14555.6 gi|530549828|ref|YP_008430384.1| - 0.03 14.1 0.0 0.046 13.6 0.0 1.3 1 0 0 1 1 1 0 UBA-like domain RTC4 PF14474.6 gi|530549828|ref|YP_008430384.1| - 0.04 14.1 0.3 0.083 13.1 0.3 1.6 1 1 0 1 1 1 0 RTC4-like domain Sigma54_CBD PF04963.13 gi|530549828|ref|YP_008430384.1| - 0.042 13.7 0.9 0.19 11.6 0.2 2.0 1 1 1 2 2 2 0 Sigma-54 factor, core binding domain HOIP-UBA PF16678.5 gi|530549828|ref|YP_008430384.1| - 0.046 13.7 0.7 0.078 13.0 0.3 1.7 1 1 0 1 1 1 0 HOIP UBA domain pair CUE PF02845.16 gi|530549828|ref|YP_008430384.1| - 0.056 13.2 0.0 0.66 9.8 0.0 2.4 1 1 1 2 2 2 0 CUE domain DUF3389 PF11869.8 gi|530549828|ref|YP_008430384.1| - 0.14 12.4 1.5 9.7 6.5 0.4 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF3389) PhageMin_Tail PF10145.9 gi|530549828|ref|YP_008430384.1| - 0.14 11.9 2.1 0.62 9.9 2.1 2.0 1 1 0 1 1 1 0 Phage-related minor tail protein CMD PF02627.20 gi|530549829|ref|YP_008430385.1| - 1.1e-17 63.8 1.0 1.3e-17 63.7 1.0 1.0 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family GTP-bdg_N PF13167.6 gi|530549830|ref|YP_008430386.1| - 8.7e-22 77.6 0.1 3.6e-21 75.6 0.1 2.1 1 0 0 1 1 1 1 GTP-binding GTPase N-terminal MMR_HSR1 PF01926.23 gi|530549830|ref|YP_008430386.1| - 4.8e-21 75.0 0.1 1.8e-20 73.1 0.1 2.0 2 0 0 2 2 2 1 50S ribosome-binding GTPase GTP-bdg_M PF16360.5 gi|530549830|ref|YP_008430386.1| - 6.4e-20 71.5 6.7 1.7e-19 70.1 6.7 1.8 1 0 0 1 1 1 1 GTP-binding GTPase Middle Region FeoB_N PF02421.18 gi|530549830|ref|YP_008430386.1| - 3.5e-09 36.4 0.1 8.1e-09 35.2 0.1 1.7 1 0 0 1 1 1 1 Ferrous iron transport protein B RsgA_GTPase PF03193.16 gi|530549830|ref|YP_008430386.1| - 6.7e-08 32.6 2.2 0.0016 18.4 0.0 2.9 3 0 0 3 3 3 2 RsgA GTPase GTP_EFTU PF00009.27 gi|530549830|ref|YP_008430386.1| - 1.6e-06 27.8 0.1 2.3e-05 24.0 0.1 2.3 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain Dynamin_N PF00350.23 gi|530549830|ref|YP_008430386.1| - 1.8e-05 24.9 0.3 0.0051 16.9 0.0 3.0 2 1 1 3 3 3 1 Dynamin family Arf PF00025.21 gi|530549830|ref|YP_008430386.1| - 4.2e-05 23.1 2.0 0.00012 21.6 1.5 2.0 1 1 0 1 1 1 1 ADP-ribosylation factor family Septin PF00735.18 gi|530549830|ref|YP_008430386.1| - 0.0001 21.7 2.3 0.11 11.7 0.4 2.3 2 0 0 2 2 2 2 Septin Roc PF08477.13 gi|530549830|ref|YP_008430386.1| - 0.00036 20.7 0.1 0.0021 18.2 0.1 2.1 1 1 0 1 1 1 1 Ras of Complex, Roc, domain of DAPkinase Ras PF00071.22 gi|530549830|ref|YP_008430386.1| - 0.00059 19.5 0.0 0.0016 18.0 0.0 1.7 1 1 0 1 1 1 1 Ras family SRPRB PF09439.10 gi|530549830|ref|YP_008430386.1| - 0.00076 19.0 1.1 0.0016 17.9 1.1 1.5 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit PduV-EutP PF10662.9 gi|530549830|ref|YP_008430386.1| - 0.00081 19.2 0.5 1 9.1 0.1 2.7 2 0 0 2 2 2 2 Ethanolamine utilisation - propanediol utilisation cobW PF02492.19 gi|530549830|ref|YP_008430386.1| - 0.0012 18.5 1.5 0.53 9.9 0.2 2.9 2 1 1 3 3 3 2 CobW/HypB/UreG, nucleotide-binding domain Spore_IV_A PF09547.10 gi|530549830|ref|YP_008430386.1| - 0.0025 16.9 1.2 0.0048 15.9 0.4 1.8 2 0 0 2 2 2 1 Stage IV sporulation protein A (spore_IV_A) HSDR_N PF04313.14 gi|530549830|ref|YP_008430386.1| - 0.011 15.6 0.6 0.62 10.0 0.3 2.8 1 1 1 2 2 2 0 Type I restriction enzyme R protein N terminus (HSDR_N) ABC_tran PF00005.27 gi|530549830|ref|YP_008430386.1| - 0.026 15.0 0.4 0.064 13.8 0.1 2.0 2 1 0 2 2 2 0 ABC transporter ZnuA PF01297.17 gi|530549830|ref|YP_008430386.1| - 0.032 13.6 1.5 1.3 8.4 0.0 2.9 3 1 1 4 4 4 0 Zinc-uptake complex component A periplasmic Kinase-PolyVal PF18762.1 gi|530549830|ref|YP_008430386.1| - 0.046 13.7 0.0 0.12 12.3 0.0 1.7 2 0 0 2 2 1 0 Serine/Threonine/Tyrosine Kinase found in polyvalent proteins CLP1_P PF16575.5 gi|530549830|ref|YP_008430386.1| - 0.17 11.7 0.3 7.3 6.3 0.1 3.1 2 1 1 3 3 3 0 mRNA cleavage and polyadenylation factor CLP1 P-loop RNA_binding PF01877.17 gi|564287496|ref|YP_008430387.3| - 6e-17 62.0 0.1 8.2e-17 61.6 0.1 1.2 1 0 0 1 1 1 1 RNA binding ACOX PF01756.19 gi|564287496|ref|YP_008430387.3| - 0.16 11.5 0.0 0.41 10.2 0.0 1.5 1 1 0 2 2 2 0 Acyl-CoA oxidase Peptidase_M24 PF00557.24 gi|530549832|ref|YP_008430388.1| - 1.9e-70 236.8 0.7 2.8e-70 236.3 0.7 1.2 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.18 gi|530549832|ref|YP_008430388.1| - 3.3e-19 69.9 0.2 5.5e-19 69.1 0.2 1.4 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain Radical_SAM PF04055.21 gi|530549833|ref|YP_008430389.1| - 9.9e-27 94.3 0.9 6.9e-25 88.4 0.2 2.3 2 0 0 2 2 2 1 Radical SAM superfamily UPF0004 PF00919.20 gi|530549833|ref|YP_008430389.1| - 3.1e-20 72.0 0.0 7.5e-20 70.8 0.0 1.7 1 0 0 1 1 1 1 Uncharacterized protein family UPF0004 TRAM PF01938.20 gi|530549833|ref|YP_008430389.1| - 3.8e-10 39.6 0.0 1.7e-09 37.5 0.1 2.2 2 0 0 2 2 2 1 TRAM domain HMGL-like PF00682.19 gi|530549833|ref|YP_008430389.1| - 0.0044 16.6 0.0 0.049 13.2 0.0 2.2 2 0 0 2 2 2 1 HMGL-like TRAM_2 PF18693.1 gi|530549833|ref|YP_008430389.1| - 0.013 15.6 0.1 0.26 11.5 0.1 2.6 1 1 0 1 1 1 0 TRAM domain Glyco_trans_4_2 PF13477.6 gi|530549833|ref|YP_008430389.1| - 0.03 14.4 0.0 11 6.0 0.0 3.2 3 0 0 3 3 3 0 Glycosyl transferase 4-like RraB PF06877.11 gi|530549833|ref|YP_008430389.1| - 0.05 14.3 0.0 49 4.7 0.0 3.4 3 1 0 3 3 3 0 Regulator of ribonuclease activity B DUF4131 PF13567.6 gi|530549834|ref|YP_008430390.1| - 0.053 13.2 3.6 0.056 13.1 3.6 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) DUF2976 PF11190.8 gi|530549834|ref|YP_008430390.1| - 0.35 10.7 7.6 0.73 9.7 7.6 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF2976) S_2TMBeta PF18153.1 gi|530549834|ref|YP_008430390.1| - 0.41 10.4 2.4 0.48 10.2 2.4 1.1 1 0 0 1 1 1 0 SMODS-associating 2TM, beta-strand rich effector domain PrgI PF12666.7 gi|530549834|ref|YP_008430390.1| - 0.43 11.3 6.0 0.48 11.2 6.0 1.1 1 0 0 1 1 1 0 PrgI family protein RseC_MucC PF04246.12 gi|530549834|ref|YP_008430390.1| - 1.1 9.2 5.6 1.3 9.0 5.6 1.1 1 0 0 1 1 1 0 Positive regulator of sigma(E), RseC/MucC adh_short_C2 PF13561.6 gi|530549835|ref|YP_008430391.1| - 4.1e-57 193.4 0.0 5.3e-57 193.1 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|530549835|ref|YP_008430391.1| - 5.8e-44 149.9 0.0 6.8e-44 149.7 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|530549835|ref|YP_008430391.1| - 6.2e-07 29.5 0.0 1.1e-06 28.7 0.0 1.3 1 1 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|530549835|ref|YP_008430391.1| - 3.8e-05 23.3 0.1 0.00013 21.5 0.1 1.8 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family Ldh_1_N PF00056.23 gi|530549835|ref|YP_008430391.1| - 0.07 13.2 0.2 0.14 12.2 0.1 1.6 2 0 0 2 2 2 0 lactate/malate dehydrogenase, NAD binding domain DUF43 PF01861.16 gi|530549835|ref|YP_008430391.1| - 0.12 11.6 0.0 0.2 10.9 0.0 1.3 1 0 0 1 1 1 0 Branched-chain polyamine synthase A C-terminal domain P5CR_dimer PF14748.6 gi|530549835|ref|YP_008430391.1| - 0.13 12.5 0.3 0.43 10.8 0.0 1.8 2 0 0 2 2 2 0 Pyrroline-5-carboxylate reductase dimerisation PGF-CTERM PF18204.1 gi|530549836|ref|YP_008430392.1| - 0.57 10.2 4.6 1.4 9.0 4.6 1.7 1 0 0 1 1 1 0 PGF-CTERM motif DUF4855 PF16147.5 gi|530549838|ref|YP_008430394.1| - 1.9e-07 30.5 2.8 2.6e-07 30.1 2.8 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4855) Lactamase_B_2 PF12706.7 gi|530549840|ref|YP_008430396.1| - 1.7e-05 24.4 0.0 2.5e-05 23.9 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|530549840|ref|YP_008430396.1| - 4.6e-05 23.4 0.0 7.3e-05 22.7 0.0 1.4 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|530549840|ref|YP_008430396.1| - 0.003 17.6 0.0 0.031 14.3 0.0 2.2 2 1 0 2 2 2 1 Metallo-beta-lactamase superfamily Metallophos_3 PF14582.6 gi|530549840|ref|YP_008430396.1| - 0.045 13.1 0.0 0.081 12.2 0.0 1.4 1 0 0 1 1 1 0 Metallophosphoesterase, calcineurin superfamily DUF835 PF05763.12 gi|530549841|ref|YP_008430397.1| - 1.3e-34 118.9 0.1 1.7e-34 118.4 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF835) DUF5357 PF17310.2 gi|530549841|ref|YP_008430397.1| - 1.3 7.5 4.1 2.3 6.7 4.1 1.3 1 0 0 1 1 1 0 Family of unknown function (DUF5357) DEAD PF00270.29 gi|530549842|ref|YP_008430398.1| - 1e-48 165.4 0.0 2e-48 164.5 0.0 1.5 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|530549842|ref|YP_008430398.1| - 4.2e-32 110.8 0.3 1.1e-29 103.0 0.1 3.1 2 1 1 3 3 3 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|530549842|ref|YP_008430398.1| - 2.1e-08 34.4 0.0 3.9e-08 33.5 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit CMS1 PF14617.6 gi|530549842|ref|YP_008430398.1| - 0.0064 15.9 0.1 0.016 14.5 0.0 1.7 2 0 0 2 2 2 1 U3-containing 90S pre-ribosomal complex subunit UTP25 PF06862.12 gi|530549842|ref|YP_008430398.1| - 0.024 13.4 0.1 0.15 10.8 0.0 2.2 3 0 0 3 3 3 0 Utp25, U3 small nucleolar RNA-associated SSU processome protein 25 CAP18_C PF12153.8 gi|530549842|ref|YP_008430398.1| - 0.042 13.7 3.2 0.22 11.4 3.2 2.4 1 1 0 1 1 1 0 LPS binding domain of CAP18 (C terminal) SMC_N PF02463.19 gi|530549842|ref|YP_008430398.1| - 0.15 11.5 0.1 7.5 5.9 0.0 2.3 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain Metallophos PF00149.28 gi|530549844|ref|YP_008430400.1| - 7.8e-14 52.6 0.7 1.8e-13 51.5 0.7 1.6 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|530549844|ref|YP_008430400.1| - 7.1e-05 23.1 0.0 0.00015 22.0 0.0 1.5 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain DUF1833 PF08875.11 gi|530549844|ref|YP_008430400.1| - 0.012 15.2 0.0 0.021 14.4 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1833) PHO4 PF01384.20 gi|530549845|ref|YP_008430401.1| - 2e-110 369.0 38.3 2.4e-110 368.8 38.3 1.1 1 0 0 1 1 1 1 Phosphate transporter family Ytca PF17090.5 gi|530549845|ref|YP_008430401.1| - 0.0051 17.3 3.3 0.042 14.4 0.0 3.6 3 0 0 3 3 3 1 Uncharacterised protein family INSIG PF07281.12 gi|530549845|ref|YP_008430401.1| - 0.078 12.6 5.3 1.5 8.4 0.1 2.9 2 0 0 2 2 2 0 Insulin-induced protein (INSIG) SieB PF14163.6 gi|530549845|ref|YP_008430401.1| - 4.8 6.7 5.2 1.4 8.4 1.3 2.1 2 0 0 2 2 2 0 Super-infection exclusion protein B PhoU_div PF01865.16 gi|530549846|ref|YP_008430402.1| - 3e-46 157.4 7.3 3.4e-46 157.3 7.3 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF47 PhoU PF01895.19 gi|530549846|ref|YP_008430402.1| - 9e-09 35.7 9.9 0.00053 20.4 2.0 2.8 2 1 0 2 2 2 2 PhoU domain TPR_8 PF13181.6 gi|530549846|ref|YP_008430402.1| - 0.12 12.7 0.9 2.2 8.7 0.1 2.9 2 0 0 2 2 2 0 Tetratricopeptide repeat ERp29 PF07749.12 gi|530549846|ref|YP_008430402.1| - 0.28 12.1 4.3 0.25 12.3 0.7 2.4 1 1 2 3 3 3 0 Endoplasmic reticulum protein ERp29, C-terminal domain ArdA PF07275.11 gi|530549846|ref|YP_008430402.1| - 2.9 8.4 6.5 17 5.9 6.5 2.1 1 1 0 1 1 1 0 Antirestriction protein (ArdA) AsnC_trans_reg PF01037.21 gi|530549847|ref|YP_008430403.1| - 1.2e-18 66.9 0.4 1.3e-18 66.7 0.4 1.0 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain Spore_YhcN_YlaJ PF09580.10 gi|530549847|ref|YP_008430403.1| - 0.0081 16.3 0.0 0.012 15.7 0.0 1.3 1 1 0 1 1 1 1 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) GYD PF08734.11 gi|530549847|ref|YP_008430403.1| - 0.061 13.3 1.1 0.23 11.5 0.3 2.0 1 1 1 2 2 2 0 GYD domain FERM_M PF00373.18 gi|530549848|ref|YP_008430404.1| - 0.054 13.9 0.0 0.066 13.6 0.0 1.1 1 0 0 1 1 1 0 FERM central domain FmdA_AmdA PF03069.15 gi|530549849|ref|YP_008430405.1| - 5.6e-39 134.0 2.9 4.1e-21 75.3 1.6 2.0 1 1 1 2 2 2 2 Acetamidase/Formamidase family APH PF01636.23 gi|530549850|ref|YP_008430406.1| - 0.00018 21.5 0.2 0.00078 19.4 0.0 1.8 1 1 0 2 2 2 1 Phosphotransferase enzyme family Choline_kinase PF01633.20 gi|530549850|ref|YP_008430406.1| - 0.014 15.0 0.3 0.29 10.7 0.1 2.2 1 1 0 2 2 2 0 Choline/ethanolamine kinase PIP49_N PF14875.6 gi|530549850|ref|YP_008430406.1| - 0.11 12.4 0.0 0.18 11.6 0.0 1.3 1 0 0 1 1 1 0 N-term cysteine-rich ER, FAM69 Kdo PF06293.14 gi|530549850|ref|YP_008430406.1| - 0.12 11.7 0.3 0.25 10.7 0.2 1.9 1 1 0 1 1 1 0 Lipopolysaccharide kinase (Kdo/WaaP) family PVL_ORF50 PF07768.11 gi|530549850|ref|YP_008430406.1| - 0.13 12.6 1.0 8.6 6.7 0.0 2.8 2 1 0 2 2 2 0 PVL ORF-50-like family Ribo_biogen_C PF04034.13 gi|530549850|ref|YP_008430406.1| - 0.17 11.6 0.0 0.27 11.0 0.0 1.3 1 0 0 1 1 1 0 Ribosome biogenesis protein, C-terminal MreD PF04093.12 gi|530549851|ref|YP_008430407.1| - 0.027 14.5 5.6 0.032 14.3 5.6 1.1 1 0 0 1 1 1 0 rod shape-determining protein MreD Pam17 PF08566.10 gi|530549851|ref|YP_008430407.1| - 0.091 12.6 0.3 0.11 12.3 0.3 1.1 1 0 0 1 1 1 0 Mitochondrial import protein Pam17 PRA1 PF03208.19 gi|530549851|ref|YP_008430407.1| - 0.35 10.5 4.7 0.42 10.2 4.7 1.1 1 0 0 1 1 1 0 PRA1 family protein VirB3 PF05101.13 gi|530549851|ref|YP_008430407.1| - 0.83 9.9 5.0 3.4 8.0 0.2 2.1 2 0 0 2 2 2 0 Type IV secretory pathway, VirB3-like protein TctB PF07331.11 gi|530549851|ref|YP_008430407.1| - 3.2 8.0 11.7 11 6.3 11.8 1.7 1 1 0 1 1 1 0 Tripartite tricarboxylate transporter TctB family Peptidase_S9 PF00326.21 gi|530549852|ref|YP_008430408.1| - 1.4e-53 181.5 0.0 1.9e-53 181.1 0.0 1.2 1 0 0 1 1 1 1 Prolyl oligopeptidase family Peptidase_S15 PF02129.18 gi|530549852|ref|YP_008430408.1| - 2.7e-11 43.6 0.0 4.4e-08 33.0 0.0 2.2 1 1 1 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) PD40 PF07676.12 gi|530549852|ref|YP_008430408.1| - 4.1e-06 26.6 0.0 0.098 12.6 0.0 2.8 2 0 0 2 2 2 2 WD40-like Beta Propeller Repeat Hydrolase_4 PF12146.8 gi|530549852|ref|YP_008430408.1| - 2.4e-05 23.7 0.1 0.0021 17.3 0.0 2.2 2 0 0 2 2 2 1 Serine aminopeptidase, S33 Abhydrolase_1 PF00561.20 gi|530549852|ref|YP_008430408.1| - 7.5e-05 22.5 0.0 0.00026 20.7 0.0 1.8 1 1 1 2 2 2 1 alpha/beta hydrolase fold DLH PF01738.18 gi|530549852|ref|YP_008430408.1| - 0.00016 21.3 0.0 0.00036 20.2 0.0 1.5 1 1 0 1 1 1 1 Dienelactone hydrolase family AXE1 PF05448.12 gi|530549852|ref|YP_008430408.1| - 0.00017 20.3 0.4 0.028 13.1 0.5 2.9 2 1 0 2 2 2 1 Acetyl xylan esterase (AXE1) Abhydrolase_6 PF12697.7 gi|530549852|ref|YP_008430408.1| - 0.012 16.2 0.0 0.032 14.8 0.0 1.7 2 0 0 2 2 2 0 Alpha/beta hydrolase family DUF2920 PF11144.8 gi|530549852|ref|YP_008430408.1| - 0.014 14.6 0.0 4.6 6.3 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2920) Abhydrolase_2 PF02230.16 gi|530549852|ref|YP_008430408.1| - 0.017 14.9 0.1 0.36 10.6 0.0 2.7 2 1 0 2 2 2 0 Phospholipase/Carboxylesterase Op_neuropeptide PF08035.11 gi|530549852|ref|YP_008430408.1| - 0.023 14.5 0.3 3.9 7.4 0.3 2.9 3 0 0 3 3 3 0 Opioids neuropeptide Coatomer_WDAD PF04053.14 gi|530549852|ref|YP_008430408.1| - 0.044 12.8 0.3 0.073 12.1 0.3 1.3 1 0 0 1 1 1 0 Coatomer WD associated region BofC_C PF08955.10 gi|530549852|ref|YP_008430408.1| - 0.094 12.8 0.0 8.6 6.5 0.0 2.7 2 0 0 2 2 2 0 BofC C-terminal domain PAF-AH_p_II PF03403.13 gi|530549852|ref|YP_008430408.1| - 0.16 10.5 0.0 7 5.1 0.0 2.3 1 1 1 2 2 2 0 Platelet-activating factor acetylhydrolase, isoform II DUF3860 PF12976.7 gi|564287497|ref|YP_008430409.3| - 0.16 12.0 0.5 6.9 6.8 0.1 2.3 2 0 0 2 2 2 0 Domain of Unknown Function with PDB structure (DUF3860) MAF_flag10 PF01973.18 gi|564287498|ref|YP_008430410.3| - 1.3e-33 116.1 0.0 1.9e-33 115.6 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF115 TPK_catalytic PF04263.16 gi|564287498|ref|YP_008430410.3| - 0.036 14.1 0.0 0.052 13.6 0.0 1.5 1 1 0 1 1 1 0 Thiamin pyrophosphokinase, catalytic domain SBP_bac_5 PF00496.22 gi|530549855|ref|YP_008430411.1| - 6.8e-106 354.4 5.0 8.3e-106 354.1 5.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle OpuAC PF04069.12 gi|530549855|ref|YP_008430411.1| - 0.01 15.4 0.2 0.62 9.6 0.2 2.5 2 0 0 2 2 2 0 Substrate binding domain of ABC-type glycine betaine transport system Fungus-induced PF10917.8 gi|530549855|ref|YP_008430411.1| - 0.09 13.1 0.7 0.17 12.3 0.7 1.4 1 0 0 1 1 1 0 Fungus-induced protein BPD_transp_1 PF00528.22 gi|530549856|ref|YP_008430412.1| - 2.6e-47 161.0 11.5 2.6e-47 161.0 11.5 2.1 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|530549857|ref|YP_008430413.1| - 3.6e-28 98.5 11.6 3.6e-28 98.5 11.6 2.1 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|530549857|ref|YP_008430413.1| - 4.1e-08 33.1 3.3 4.1e-08 33.1 3.3 4.0 5 0 0 5 5 5 1 N-terminal TM domain of oligopeptide transport permease C Ac76 PF05814.11 gi|530549857|ref|YP_008430413.1| - 4 7.5 0.0 4 7.5 0.0 3.1 4 0 0 4 4 4 0 Orf76 (Ac76) ABC_tran PF00005.27 gi|530549858|ref|YP_008430414.1| - 6.4e-30 104.5 0.0 8.9e-30 104.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|530549858|ref|YP_008430414.1| - 2.6e-19 69.5 0.0 5.2e-19 68.5 0.0 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|530549858|ref|YP_008430414.1| - 2.4e-08 34.2 1.1 9.8e-06 25.6 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|530549858|ref|YP_008430414.1| - 7.1e-07 28.9 0.1 1.9e-06 27.5 0.1 1.6 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain tRNA_lig_kinase PF08303.11 gi|530549858|ref|YP_008430414.1| - 0.00026 21.1 0.0 0.00085 19.4 0.0 1.8 2 0 0 2 2 2 1 tRNA ligase kinase domain AAA_15 PF13175.6 gi|530549858|ref|YP_008430414.1| - 0.00031 20.6 0.1 0.16 11.6 0.0 2.2 1 1 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.6 gi|530549858|ref|YP_008430414.1| - 0.00081 19.1 0.0 0.0017 18.1 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|530549858|ref|YP_008430414.1| - 0.014 15.7 0.1 0.098 12.9 0.1 2.0 1 1 0 1 1 1 0 AAA domain T2SSE PF00437.20 gi|530549858|ref|YP_008430414.1| - 0.021 13.9 0.0 0.032 13.3 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein RsgA_GTPase PF03193.16 gi|530549858|ref|YP_008430414.1| - 0.028 14.3 0.0 0.06 13.3 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase AAA_7 PF12775.7 gi|530549858|ref|YP_008430414.1| - 0.037 13.5 0.0 0.071 12.6 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region Mg_chelatase PF01078.21 gi|530549858|ref|YP_008430414.1| - 0.056 12.8 0.0 1 8.7 0.0 2.2 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_16 PF13191.6 gi|530549858|ref|YP_008430414.1| - 0.066 13.6 0.0 0.092 13.1 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain IstB_IS21 PF01695.17 gi|530549858|ref|YP_008430414.1| - 0.073 12.8 0.1 0.27 11.0 0.0 1.8 2 0 0 2 2 2 0 IstB-like ATP binding protein Polyoma_lg_T_C PF06431.11 gi|530549858|ref|YP_008430414.1| - 0.096 11.5 0.0 0.14 11.0 0.0 1.2 1 0 0 1 1 1 0 Polyomavirus large T antigen C-terminus DUF4320 PF14208.6 gi|530549858|ref|YP_008430414.1| - 0.11 12.6 0.0 0.54 10.4 0.0 2.1 3 0 0 3 3 3 0 Domain of unknown function (DUF4320) SAM_3 PF18016.1 gi|530549858|ref|YP_008430414.1| - 0.11 12.3 0.0 0.27 11.1 0.0 1.6 1 0 0 1 1 1 0 SAM domain (Sterile alpha motif) ABC_ATPase PF09818.9 gi|530549858|ref|YP_008430414.1| - 0.14 10.9 0.0 0.25 10.1 0.0 1.4 1 0 0 1 1 1 0 Predicted ATPase of the ABC class AAA_33 PF13671.6 gi|530549858|ref|YP_008430414.1| - 0.15 12.2 0.0 0.22 11.7 0.0 1.6 1 1 0 1 1 1 0 AAA domain APS_kinase PF01583.20 gi|530549858|ref|YP_008430414.1| - 0.17 11.8 0.0 0.41 10.5 0.0 1.7 2 0 0 2 2 2 0 Adenylylsulphate kinase ABC_tran PF00005.27 gi|530549859|ref|YP_008430415.1| - 9.6e-32 110.4 0.0 1.3e-31 109.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|530549859|ref|YP_008430415.1| - 5.4e-21 74.9 0.2 1.2e-20 73.7 0.2 1.6 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_22 PF13401.6 gi|530549859|ref|YP_008430415.1| - 4.5e-05 23.7 1.5 0.00071 19.9 1.5 2.2 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|530549859|ref|YP_008430415.1| - 0.0047 17.3 0.0 0.0073 16.7 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA_19 PF13245.6 gi|530549859|ref|YP_008430415.1| - 0.049 14.0 0.0 0.1 12.9 0.0 1.5 1 1 0 1 1 1 0 AAA domain Rad17 PF03215.15 gi|530549859|ref|YP_008430415.1| - 0.061 13.2 0.0 0.12 12.2 0.0 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain ATP-synt_ab PF00006.25 gi|530549859|ref|YP_008430415.1| - 0.074 12.7 0.0 0.076 12.7 0.0 1.2 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain IstB_IS21 PF01695.17 gi|530549859|ref|YP_008430415.1| - 0.1 12.3 0.1 0.35 10.6 0.0 1.8 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_30 PF13604.6 gi|530549859|ref|YP_008430415.1| - 0.16 11.7 0.1 2.6 7.7 0.0 2.1 2 0 0 2 2 2 0 AAA domain Mut7-C PF01927.16 gi|530549860|ref|YP_008430416.1| - 1e-45 155.4 0.0 1.2e-45 155.2 0.0 1.0 1 0 0 1 1 1 1 Mut7-C RNAse domain DUF5615 PF18480.1 gi|530549860|ref|YP_008430416.1| - 5.9e-07 29.2 0.0 1.7e-06 27.7 0.0 1.7 1 1 0 1 1 1 1 Domain of unknown function (DUF5615) PIN_10 PF18478.1 gi|530549860|ref|YP_008430416.1| - 0.0074 16.5 0.2 0.031 14.5 0.2 1.9 1 1 0 1 1 1 1 PIN like domain Zn-ribbon_8 PF09723.10 gi|530549860|ref|YP_008430416.1| - 0.0076 16.4 0.5 1 9.5 0.0 2.5 2 0 0 2 2 2 1 Zinc ribbon domain Rubredoxin PF00301.20 gi|530549860|ref|YP_008430416.1| - 0.0086 16.1 0.9 2.4 8.3 0.0 2.4 2 0 0 2 2 2 2 Rubredoxin zf_CopZ PF18423.1 gi|530549860|ref|YP_008430416.1| - 0.0088 16.0 0.4 0.015 15.2 0.4 1.4 1 0 0 1 1 1 1 Zinc binding domain Zn_ribbon_SprT PF17283.2 gi|530549860|ref|YP_008430416.1| - 0.037 13.9 1.2 0.21 11.5 1.2 2.0 1 1 0 1 1 1 0 SprT-like zinc ribbon domain Med27 PF11571.8 gi|530549860|ref|YP_008430416.1| - 0.05 14.0 0.5 0.099 13.0 0.1 1.6 1 1 1 2 2 2 0 Mediator complex subunit 27 ADK_lid PF05191.14 gi|530549860|ref|YP_008430416.1| - 0.1 12.6 0.1 13 5.9 0.0 2.3 2 0 0 2 2 2 0 Adenylate kinase, active site lid DUF35_N PF12172.8 gi|530549860|ref|YP_008430416.1| - 0.29 11.1 3.9 14 5.7 0.5 2.9 3 0 0 3 3 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) TF_Zn_Ribbon PF08271.12 gi|530549860|ref|YP_008430416.1| - 0.82 9.2 4.6 12 5.5 4.6 2.3 1 1 0 1 1 1 0 TFIIB zinc-binding Lactamase_B_2 PF12706.7 gi|530549861|ref|YP_008430417.1| - 1.3e-18 67.3 0.2 1.6e-18 67.0 0.2 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|530549861|ref|YP_008430417.1| - 1.4e-07 31.7 2.0 3.3e-07 30.5 1.6 1.8 1 1 1 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.6 gi|530549861|ref|YP_008430417.1| - 0.016 15.1 0.1 0.022 14.6 0.1 1.3 1 0 0 1 1 1 0 Beta-lactamase superfamily domain Nitroreductase PF00881.24 gi|530549862|ref|YP_008430418.1| - 1e-27 97.2 0.0 1.3e-27 96.9 0.0 1.1 1 0 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.6 gi|530549862|ref|YP_008430418.1| - 1.1e-11 44.7 0.5 1.4e-05 24.8 1.3 2.7 1 1 1 2 2 2 2 Putative TM nitroreductase RecX PF02631.16 gi|530549862|ref|YP_008430418.1| - 0.0074 16.7 0.1 0.013 15.9 0.1 1.4 1 0 0 1 1 1 1 RecX family HTH_33 PF13592.6 gi|530549862|ref|YP_008430418.1| - 0.064 12.9 0.1 0.15 11.8 0.1 1.5 1 0 0 1 1 1 0 Winged helix-turn helix Protamine_3 PF08188.11 gi|530549862|ref|YP_008430418.1| - 0.067 13.4 3.0 0.63 10.3 0.0 2.2 2 0 0 2 2 2 0 Spermatozal protamine family Shisa PF13908.6 gi|530549863|ref|YP_008430419.1| - 0.0029 17.9 2.7 0.0052 17.1 2.7 1.3 1 0 0 1 1 1 1 Wnt and FGF inhibitory regulator Mucin PF01456.17 gi|530549863|ref|YP_008430419.1| - 0.17 11.8 43.9 0.29 11.1 43.9 1.3 1 0 0 1 1 1 0 Mucin-like glycoprotein DSPc PF00782.20 gi|530549864|ref|YP_008430420.1| - 2.1e-20 72.9 0.0 2.5e-20 72.7 0.0 1.1 1 0 0 1 1 1 1 Dual specificity phosphatase, catalytic domain Y_phosphatase PF00102.27 gi|530549864|ref|YP_008430420.1| - 1.4e-08 34.7 0.0 1.6e-08 34.4 0.0 1.2 1 0 0 1 1 1 1 Protein-tyrosine phosphatase CDKN3 PF05706.12 gi|530549864|ref|YP_008430420.1| - 5.7e-06 26.1 0.0 7.2e-06 25.8 0.0 1.2 1 0 0 1 1 1 1 Cyclin-dependent kinase inhibitor 3 (CDKN3) PTPlike_phytase PF14566.6 gi|530549864|ref|YP_008430420.1| - 0.0001 22.5 0.0 0.00022 21.4 0.0 1.6 2 0 0 2 2 2 1 Inositol hexakisphosphate Y_phosphatase3 PF13350.6 gi|530549864|ref|YP_008430420.1| - 0.0072 16.3 0.0 0.0083 16.1 0.0 1.2 1 0 0 1 1 1 1 Tyrosine phosphatase family Init_tRNA_PT PF04179.12 gi|530549864|ref|YP_008430420.1| - 0.077 13.3 0.0 0.13 12.6 0.0 1.4 1 0 0 1 1 1 0 Rit1 DUSP-like domain IF-2B PF01008.17 gi|530549864|ref|YP_008430420.1| - 0.15 11.3 0.0 0.23 10.6 0.0 1.4 1 1 0 1 1 1 0 Initiation factor 2 subunit family DcuC PF03606.15 gi|530549865|ref|YP_008430421.1| - 0.069 11.6 0.7 0.1 11.0 0.7 1.2 1 0 0 1 1 1 0 C4-dicarboxylate anaerobic carrier EI24 PF07264.11 gi|530549865|ref|YP_008430421.1| - 0.077 13.2 3.5 0.13 12.5 3.5 1.3 1 0 0 1 1 1 0 Etoposide-induced protein 2.4 (EI24) XK-related PF09815.9 gi|530549865|ref|YP_008430421.1| - 0.2 10.7 2.1 0.29 10.2 2.1 1.2 1 0 0 1 1 1 0 XK-related protein E1-E2_ATPase PF00122.20 gi|530549866|ref|YP_008430422.1| - 0.32 10.5 3.1 0.63 9.5 3.1 1.5 1 0 0 1 1 1 0 E1-E2 ATPase DUF2070 PF09843.9 gi|530549866|ref|YP_008430422.1| - 1.8 6.8 10.5 2.5 6.3 10.5 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) IRK PF01007.20 gi|530549866|ref|YP_008430422.1| - 3 7.6 6.3 0.33 10.7 0.5 2.1 2 1 0 2 2 2 0 Inward rectifier potassium channel transmembrane domain DPM3 PF08285.11 gi|530549866|ref|YP_008430422.1| - 7.3 6.9 8.1 1.1 9.5 3.5 2.0 1 1 1 2 2 2 0 Dolichol-phosphate mannosyltransferase subunit 3 (DPM3) EI24 PF07264.11 gi|530549867|ref|YP_008430423.1| - 0.068 13.4 7.4 0.1 12.8 7.4 1.3 1 0 0 1 1 1 0 Etoposide-induced protein 2.4 (EI24) AA_permease_2 PF13520.6 gi|530549867|ref|YP_008430423.1| - 4.4 6.0 11.2 9.1 5.0 11.2 1.5 1 1 0 1 1 1 0 Amino acid permease DUF2981 PF11200.8 gi|530549867|ref|YP_008430423.1| - 8.8 6.0 7.0 6.5 6.4 1.5 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2981) LigB PF02900.18 gi|530549868|ref|YP_008430424.1| - 3.5e-16 59.1 0.0 4.1e-16 58.9 0.0 1.0 1 0 0 1 1 1 1 Catalytic LigB subunit of aromatic ring-opening dioxygenase PALP PF00291.25 gi|530549869|ref|YP_008430425.1| - 1.3e-72 244.7 0.0 1.5e-72 244.5 0.0 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Arginase PF00491.21 gi|530549870|ref|YP_008430426.1| - 5.2e-73 246.0 0.0 6.7e-73 245.6 0.0 1.1 1 0 0 1 1 1 1 Arginase family zf-RING_9 PF13901.6 gi|530549870|ref|YP_008430426.1| - 0.084 12.8 0.0 0.13 12.3 0.0 1.2 1 0 0 1 1 1 0 Putative zinc-RING and/or ribbon tRNA_bind PF01588.20 gi|530549871|ref|YP_008430427.1| - 1e-25 89.6 0.0 1.2e-25 89.5 0.0 1.0 1 0 0 1 1 1 1 Putative tRNA binding domain MFS_1 PF07690.16 gi|530549872|ref|YP_008430428.1| - 3.7e-30 105.0 43.7 8.5e-21 74.3 33.7 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|530549872|ref|YP_008430428.1| - 1.4e-07 30.8 29.0 4.4e-07 29.1 29.0 1.8 1 1 0 1 1 1 1 MFS_1 like family BT1 PF03092.16 gi|530549872|ref|YP_008430428.1| - 0.00073 17.9 5.5 0.00073 17.9 5.5 2.5 2 1 1 3 3 3 3 BT1 family NADH-u_ox-rdase PF10785.9 gi|530549872|ref|YP_008430428.1| - 1.6 9.4 9.5 0.89 10.3 0.1 3.7 3 1 0 3 3 3 0 NADH-ubiquinone oxidoreductase complex I, 21 kDa subunit PALP PF00291.25 gi|530549874|ref|YP_008430430.1| - 1.1e-50 172.8 0.0 1.3e-50 172.5 0.0 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme CdiA_C_tRNase PF18664.1 gi|530549874|ref|YP_008430430.1| - 0.15 12.3 0.0 2.2 8.5 0.0 2.3 2 0 0 2 2 2 0 CdiA C-terminal tRNase domain DUF1611 PF07755.11 gi|530549875|ref|YP_008430431.1| - 1.9e-67 226.4 0.0 2.7e-67 226.0 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1611_C) P-loop domain DUF1611_N PF17396.2 gi|530549875|ref|YP_008430431.1| - 2.8e-32 110.8 0.0 8.7e-32 109.2 0.0 1.9 1 0 0 1 1 1 1 Domain of unknown function (DUF1611_N) Rossmann-like domain DapB_N PF01113.20 gi|530549875|ref|YP_008430431.1| - 0.00087 19.4 0.1 0.13 12.4 0.0 2.6 2 0 0 2 2 2 1 Dihydrodipicolinate reductase, N-terminus CmcI PF04989.12 gi|530549875|ref|YP_008430431.1| - 0.045 13.4 0.0 0.078 12.7 0.0 1.4 1 0 0 1 1 1 0 Cephalosporin hydroxylase PK_C PF02887.16 gi|530549875|ref|YP_008430431.1| - 0.064 13.5 0.0 0.36 11.1 0.0 2.3 3 1 0 3 3 3 0 Pyruvate kinase, alpha/beta domain CbiA PF01656.23 gi|530549875|ref|YP_008430431.1| - 0.18 11.9 0.2 2.5 8.2 0.0 2.8 3 1 0 3 3 3 0 CobQ/CobB/MinD/ParA nucleotide binding domain Oxidored_nitro PF00148.19 gi|530549876|ref|YP_008430432.1| - 0.11 11.1 0.0 3.5 6.3 0.0 2.0 2 0 0 2 2 2 0 Nitrogenase component 1 type Oxidoreductase Acetyltransf_1 PF00583.25 gi|530549877|ref|YP_008430433.1| - 1.1e-18 67.5 0.4 1.3e-18 67.3 0.4 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|530549877|ref|YP_008430433.1| - 8.5e-12 45.1 0.0 1e-11 44.9 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|530549877|ref|YP_008430433.1| - 5.6e-09 36.3 0.2 7.9e-09 35.8 0.2 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|530549877|ref|YP_008430433.1| - 0.00019 21.3 0.0 0.00032 20.6 0.0 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_CG PF14542.6 gi|530549877|ref|YP_008430433.1| - 0.0012 18.9 0.0 0.0022 18.1 0.0 1.5 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_9 PF13527.7 gi|530549877|ref|YP_008430433.1| - 0.0041 17.2 0.0 0.0063 16.6 0.0 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.7 gi|530549877|ref|YP_008430433.1| - 0.0073 16.5 0.1 0.011 15.9 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain CN_hydrolase PF00795.22 gi|530549878|ref|YP_008430434.1| - 2.4e-16 59.9 0.0 3e-16 59.5 0.0 1.1 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase DUF257 PF03192.13 gi|530549879|ref|YP_008430435.1| - 2.4e-24 86.3 2.2 2.7e-24 86.1 2.2 1.0 1 0 0 1 1 1 1 Pyrococcus protein of unknown function, DUF257 RcbX PF02341.15 gi|530549879|ref|YP_008430435.1| - 0.094 13.0 0.1 0.15 12.4 0.1 1.3 1 0 0 1 1 1 0 RbcX protein DUF257 PF03192.13 gi|530549880|ref|YP_008430436.1| - 0.0004 20.3 0.0 0.00043 20.2 0.0 1.0 1 0 0 1 1 1 1 Pyrococcus protein of unknown function, DUF257 Methyltransf_25 PF13649.6 gi|530549882|ref|YP_008430438.1| - 1.2e-20 73.9 0.0 1.9e-20 73.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|530549882|ref|YP_008430438.1| - 8.9e-20 71.1 0.0 1.2e-19 70.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|530549882|ref|YP_008430438.1| - 2.6e-19 69.5 0.0 3.4e-19 69.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|530549882|ref|YP_008430438.1| - 9e-13 48.8 0.0 1.3e-12 48.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|530549882|ref|YP_008430438.1| - 3.8e-11 43.1 0.0 4.5e-11 42.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|530549882|ref|YP_008430438.1| - 8.8e-11 41.6 0.0 1.1e-10 41.3 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_29 PF03141.16 gi|530549882|ref|YP_008430438.1| - 2e-05 23.3 0.0 4.9e-05 22.1 0.0 1.5 1 1 0 1 1 1 1 Putative S-adenosyl-L-methionine-dependent methyltransferase CMAS PF02353.20 gi|530549882|ref|YP_008430438.1| - 5.3e-05 22.7 0.0 6.9e-05 22.3 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase PrmA PF06325.13 gi|530549882|ref|YP_008430438.1| - 0.0003 20.3 0.0 0.00041 19.9 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) TehB PF03848.14 gi|530549882|ref|YP_008430438.1| - 0.00038 19.9 0.0 0.00049 19.6 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_32 PF13679.6 gi|530549882|ref|YP_008430438.1| - 0.0009 19.3 0.0 0.0014 18.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|530549882|ref|YP_008430438.1| - 0.0014 18.3 0.0 0.0043 16.6 0.0 1.8 2 1 0 2 2 2 1 Methyltransferase small domain Methyltransf_PK PF05891.12 gi|530549882|ref|YP_008430438.1| - 0.0025 17.4 0.0 0.004 16.7 0.0 1.3 1 0 0 1 1 1 1 AdoMet dependent proline di-methyltransferase Methyltransf_18 PF12847.7 gi|530549882|ref|YP_008430438.1| - 0.0045 16.9 0.0 0.026 14.5 0.0 2.1 1 1 0 1 1 1 1 Methyltransferase domain N6_N4_Mtase PF01555.18 gi|530549882|ref|YP_008430438.1| - 0.011 15.5 0.0 0.4 10.3 0.0 2.3 2 1 0 2 2 2 0 DNA methylase UPF0020 PF01170.18 gi|530549882|ref|YP_008430438.1| - 0.023 14.4 0.0 0.26 10.9 0.0 1.9 2 0 0 2 2 2 0 Putative RNA methylase family UPF0020 rRNA_methylase PF06962.12 gi|530549882|ref|YP_008430438.1| - 0.025 14.5 0.0 0.071 13.1 0.0 1.7 2 0 0 2 2 2 0 Putative rRNA methylase CheR PF01739.18 gi|530549882|ref|YP_008430438.1| - 0.031 13.8 0.0 5.7 6.4 0.0 2.2 1 1 1 2 2 2 0 CheR methyltransferase, SAM binding domain DUF2188 PF09954.9 gi|530549882|ref|YP_008430438.1| - 0.051 13.7 0.2 0.11 12.6 0.1 1.6 2 0 0 2 2 1 0 Uncharacterized protein conserved in bacteria (DUF2188) NodS PF05401.11 gi|530549882|ref|YP_008430438.1| - 0.053 13.1 0.0 0.065 12.8 0.0 1.1 1 0 0 1 1 1 0 Nodulation protein S (NodS) AdoMet_MTase PF07757.13 gi|530549882|ref|YP_008430438.1| - 0.098 13.0 0.0 0.2 12.0 0.0 1.6 1 0 0 1 1 1 0 Predicted AdoMet-dependent methyltransferase GABP-alpha PF11620.8 gi|530549882|ref|YP_008430438.1| - 0.13 12.5 0.1 2.2 8.5 0.0 2.4 1 1 2 3 3 3 0 GA-binding protein alpha chain adh_short_C2 PF13561.6 gi|530549882|ref|YP_008430438.1| - 0.13 11.7 0.1 0.22 11.0 0.1 1.3 1 0 0 1 1 1 0 Enoyl-(Acyl carrier protein) reductase Trypsin_2 PF13365.6 gi|530549883|ref|YP_008430439.1| - 0.0066 17.3 0.0 0.011 16.6 0.0 1.3 1 0 0 1 1 1 1 Trypsin-like peptidase domain Leader_CPA1 PF08252.11 gi|530549883|ref|YP_008430439.1| - 0.22 11.0 0.8 0.45 9.9 0.8 1.4 1 0 0 1 1 1 0 arg-2/CPA1 leader peptide DUF4767 PF15983.5 gi|530549884|ref|YP_008430440.1| - 0.09 13.0 0.0 0.13 12.5 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4767) CD47 PF04549.14 gi|530549885|ref|YP_008430441.1| - 0.061 13.5 0.7 0.061 13.5 0.7 1.5 2 0 0 2 2 2 0 CD47 transmembrane region BTP PF05232.12 gi|530549885|ref|YP_008430441.1| - 7.8 6.6 11.9 0.39 10.8 1.9 2.4 3 0 0 3 3 3 0 Chlorhexidine efflux transporter DUF1846 PF08903.11 gi|530549888|ref|YP_008430444.1| - 0.023 13.2 0.0 0.03 12.9 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1846) Acetyltransf_1 PF00583.25 gi|530549889|ref|YP_008430445.1| - 4.5e-13 49.5 0.1 8.8e-13 48.5 0.1 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|530549889|ref|YP_008430445.1| - 4.9e-07 30.1 0.0 8e-07 29.4 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|530549889|ref|YP_008430445.1| - 0.0001 23.0 0.0 0.00021 22.0 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|530549889|ref|YP_008430445.1| - 0.00052 19.9 0.0 0.0012 18.8 0.0 1.5 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.7 gi|530549889|ref|YP_008430445.1| - 0.003 17.6 0.0 0.043 13.9 0.0 2.5 2 1 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|530549889|ref|YP_008430445.1| - 0.0045 16.9 0.0 0.012 15.6 0.0 1.6 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.7 gi|530549889|ref|YP_008430445.1| - 0.0099 16.0 0.0 0.017 15.2 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain GNAT_acetyltran PF12746.7 gi|530549889|ref|YP_008430445.1| - 0.039 13.5 0.0 0.062 12.9 0.0 1.3 1 0 0 1 1 1 0 GNAT acetyltransferase DUF515 PF04415.12 gi|530549889|ref|YP_008430445.1| - 0.099 11.0 0.1 0.14 10.5 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF515) PanZ PF12568.8 gi|530549889|ref|YP_008430445.1| - 0.21 11.3 0.0 0.33 10.7 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain, PanZ Matrilin_ccoil PF10393.9 gi|530549890|ref|YP_008430446.1| - 0.013 15.4 0.1 0.018 14.9 0.1 1.2 1 0 0 1 1 1 0 Trimeric coiled-coil oligomerisation domain of matrilin NPV_P10 PF05531.12 gi|530549890|ref|YP_008430446.1| - 0.035 14.6 0.0 0.048 14.1 0.0 1.2 1 0 0 1 1 1 0 Nucleopolyhedrovirus P10 protein Trns_repr_metal PF02583.17 gi|530549890|ref|YP_008430446.1| - 0.045 14.1 0.1 0.08 13.3 0.1 1.5 1 1 0 1 1 1 0 Metal-sensitive transcriptional repressor HTH_5 PF01022.20 gi|530549891|ref|YP_008430447.1| - 1.4e-10 40.9 0.5 4.2e-10 39.3 0.2 1.8 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|530549891|ref|YP_008430447.1| - 7.7e-10 38.7 0.1 1.1e-09 38.3 0.1 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|530549891|ref|YP_008430447.1| - 8.7e-07 28.4 0.2 1.4e-06 27.7 0.2 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|530549891|ref|YP_008430447.1| - 0.00014 21.7 0.0 0.00021 21.1 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_34 PF13601.6 gi|530549891|ref|YP_008430447.1| - 0.00016 21.8 0.1 0.00019 21.5 0.1 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain Rrf2 PF02082.20 gi|530549891|ref|YP_008430447.1| - 0.00018 21.8 0.1 0.00026 21.3 0.1 1.2 1 0 0 1 1 1 1 Transcriptional regulator HTH_IclR PF09339.10 gi|530549891|ref|YP_008430447.1| - 0.0002 21.1 0.0 0.00051 19.8 0.0 1.6 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_CodY PF08222.11 gi|530549891|ref|YP_008430447.1| - 0.00046 19.7 0.1 0.00069 19.1 0.1 1.3 1 0 0 1 1 1 1 CodY helix-turn-helix domain FaeA PF04703.12 gi|530549891|ref|YP_008430447.1| - 0.0008 19.7 0.0 0.00096 19.5 0.0 1.2 1 0 0 1 1 1 1 FaeA-like protein MarR_2 PF12802.7 gi|530549891|ref|YP_008430447.1| - 0.001 18.9 0.1 0.0015 18.4 0.1 1.4 1 1 0 1 1 1 1 MarR family HTH_11 PF08279.12 gi|530549891|ref|YP_008430447.1| - 0.0023 17.9 0.2 0.0034 17.3 0.2 1.3 1 0 0 1 1 1 1 HTH domain TrmB PF01978.19 gi|530549891|ref|YP_008430447.1| - 0.0053 16.6 0.1 0.0079 16.1 0.1 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.6 gi|530549891|ref|YP_008430447.1| - 0.057 13.4 0.1 0.074 13.0 0.1 1.4 1 1 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_10 PF04967.12 gi|530549891|ref|YP_008430447.1| - 0.09 12.6 0.3 0.15 11.9 0.1 1.6 2 0 0 2 2 2 0 HTH DNA binding domain LexA_DNA_bind PF01726.16 gi|530549891|ref|YP_008430447.1| - 0.091 12.6 0.1 0.11 12.2 0.1 1.3 1 0 0 1 1 1 0 LexA DNA binding domain MFS_1 PF07690.16 gi|530549892|ref|YP_008430448.1| - 9.3e-11 41.2 46.8 4.4e-10 39.0 26.4 2.8 1 1 1 2 2 2 2 Major Facilitator Superfamily Nitroreductase PF00881.24 gi|530549893|ref|YP_008430449.1| - 3.2e-29 102.1 0.0 4.4e-29 101.7 0.0 1.2 1 0 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.6 gi|530549893|ref|YP_008430449.1| - 2.6e-12 46.8 0.0 5.9e-07 29.3 0.3 2.3 1 1 1 2 2 2 2 Putative TM nitroreductase AAA_14 PF13173.6 gi|530549894|ref|YP_008430450.1| - 6.3e-22 78.0 0.0 9.9e-22 77.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain ATPase_2 PF01637.18 gi|530549894|ref|YP_008430450.1| - 0.00025 21.0 0.0 0.0023 17.9 0.0 2.1 1 1 1 2 2 2 1 ATPase domain predominantly from Archaea AAA_22 PF13401.6 gi|530549894|ref|YP_008430450.1| - 0.0079 16.5 0.0 0.022 15.1 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|530549894|ref|YP_008430450.1| - 0.013 15.9 0.0 0.028 14.8 0.0 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|530549894|ref|YP_008430450.1| - 0.038 14.4 0.0 0.1 13.0 0.0 1.7 1 1 0 1 1 1 0 AAA ATPase domain HTH_29 PF13551.6 gi|530549894|ref|YP_008430450.1| - 0.045 13.8 0.0 0.11 12.6 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn helix HTH_23 PF13384.6 gi|530549894|ref|YP_008430450.1| - 0.08 12.8 0.0 0.35 10.7 0.0 2.1 2 0 0 2 2 2 0 Homeodomain-like domain FaeA PF04703.12 gi|530549894|ref|YP_008430450.1| - 0.13 12.7 0.0 0.31 11.4 0.0 1.6 1 0 0 1 1 1 0 FaeA-like protein DUF234 PF03008.14 gi|530549895|ref|YP_008430451.1| - 1.1e-31 109.2 0.1 2.6e-31 108.0 0.1 1.7 1 0 0 1 1 1 1 Archaea bacterial proteins of unknown function ATPase_2 PF01637.18 gi|530549895|ref|YP_008430451.1| - 1.2e-27 97.4 0.4 1.2e-25 90.8 0.4 2.3 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_14 PF13173.6 gi|530549895|ref|YP_008430451.1| - 4.7e-10 39.6 0.0 1.7e-09 37.8 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|530549895|ref|YP_008430451.1| - 3.5e-05 24.3 0.1 0.00012 22.5 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain UPF0102 PF02021.17 gi|530549895|ref|YP_008430451.1| - 0.001 19.2 0.2 0.0042 17.3 0.1 2.1 2 0 0 2 2 2 1 Uncharacterised protein family UPF0102 AAA_22 PF13401.6 gi|530549895|ref|YP_008430451.1| - 0.0033 17.7 0.0 0.019 15.3 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|530549895|ref|YP_008430451.1| - 0.035 14.5 0.0 0.11 12.9 0.0 1.8 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) MarR_2 PF12802.7 gi|530549895|ref|YP_008430451.1| - 0.1 12.5 0.0 0.21 11.5 0.0 1.5 1 0 0 1 1 1 0 MarR family TniB PF05621.11 gi|530549895|ref|YP_008430451.1| - 0.15 11.5 0.0 7.2 6.0 0.0 2.3 2 0 0 2 2 2 0 Bacterial TniB protein Rad50_zn_hook PF04423.14 gi|530549897|ref|YP_008430453.1| - 8.2 6.3 6.7 48 3.9 0.2 3.5 3 0 0 3 3 3 0 Rad50 zinc hook motif NTP_transf_2 PF01909.23 gi|530549898|ref|YP_008430454.1| - 1.6e-08 34.7 0.0 2.1e-08 34.4 0.0 1.3 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|530549898|ref|YP_008430454.1| - 1.6e-07 31.3 0.0 1.9e-07 31.1 0.0 1.2 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DNA_pol_B_palm PF14792.6 gi|530549898|ref|YP_008430454.1| - 0.02 15.1 0.0 0.029 14.6 0.0 1.3 1 0 0 1 1 1 0 DNA polymerase beta palm Adenyl_cycl_N PF12633.7 gi|530549898|ref|YP_008430454.1| - 0.086 12.7 0.0 0.087 12.7 0.0 1.1 1 0 0 1 1 1 0 Adenylate cyclase NT domain MdcG PF10620.9 gi|530549898|ref|YP_008430454.1| - 0.16 11.8 0.0 0.24 11.2 0.0 1.3 1 1 0 1 1 1 0 Phosphoribosyl-dephospho-CoA transferase MdcG HEPN PF05168.14 gi|530549899|ref|YP_008430455.1| - 1e-28 99.8 3.8 1.2e-28 99.6 3.8 1.0 1 0 0 1 1 1 1 HEPN domain DUF5113 PF17140.4 gi|530549899|ref|YP_008430455.1| - 0.012 15.4 0.6 0.019 14.8 0.4 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF5113) TPR_2 PF07719.17 gi|530549899|ref|YP_008430455.1| - 0.012 15.6 3.2 0.026 14.6 1.5 2.5 2 0 0 2 2 2 0 Tetratricopeptide repeat HEPN_AbiU2 PF18734.1 gi|530549899|ref|YP_008430455.1| - 0.065 12.7 0.6 5 6.6 0.0 2.3 1 1 1 2 2 2 0 AbiU2 DUF4398 PF14346.6 gi|530549899|ref|YP_008430455.1| - 0.13 12.9 1.1 0.24 12.0 1.1 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4398) TPR_1 PF00515.28 gi|530549899|ref|YP_008430455.1| - 0.19 11.6 4.6 0.14 12.0 1.2 2.5 2 1 1 3 3 3 0 Tetratricopeptide repeat TPR_14 PF13428.6 gi|530549899|ref|YP_008430455.1| - 0.8 10.7 4.2 5.4 8.1 0.6 2.5 1 1 2 3 3 3 0 Tetratricopeptide repeat ABC_membrane PF00664.23 gi|530549900|ref|YP_008430456.1| - 2.1e-54 185.0 10.4 2.8e-54 184.6 10.4 1.1 1 0 0 1 1 1 1 ABC transporter transmembrane region ABC_tran PF00005.27 gi|530549900|ref|YP_008430456.1| - 5.1e-32 111.3 0.0 8.4e-32 110.5 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA PF00004.29 gi|530549900|ref|YP_008430456.1| - 0.0018 18.7 0.2 0.019 15.4 0.2 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) SMC_N PF02463.19 gi|530549900|ref|YP_008430456.1| - 0.018 14.5 0.0 0.082 12.3 0.0 1.9 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain EI24 PF07264.11 gi|530549900|ref|YP_008430456.1| - 0.021 15.1 12.5 0.68 10.2 12.5 2.1 1 1 0 1 1 1 0 Etoposide-induced protein 2.4 (EI24) DUF87 PF01935.17 gi|530549900|ref|YP_008430456.1| - 0.022 14.9 0.2 0.069 13.2 0.1 1.9 2 0 0 2 2 2 0 Helicase HerA, central domain AAA_22 PF13401.6 gi|530549900|ref|YP_008430456.1| - 0.038 14.2 0.2 0.22 11.8 0.2 2.3 1 1 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|530549900|ref|YP_008430456.1| - 0.091 11.9 0.0 0.24 10.5 0.0 1.6 1 0 0 1 1 1 0 NB-ARC domain Ribosomal_S9 PF00380.19 gi|530549900|ref|YP_008430456.1| - 0.099 13.2 0.0 0.61 10.6 0.0 2.3 3 0 0 3 3 3 0 Ribosomal protein S9/S16 MMR_HSR1 PF01926.23 gi|530549900|ref|YP_008430456.1| - 0.1 12.7 0.0 0.32 11.1 0.0 1.9 1 0 0 1 1 1 0 50S ribosome-binding GTPase ABC_membrane_2 PF06472.15 gi|530549900|ref|YP_008430456.1| - 0.63 9.4 8.6 0.048 13.1 3.5 1.7 2 0 0 2 2 2 0 ABC transporter transmembrane region 2 ABC_membrane PF00664.23 gi|530549901|ref|YP_008430457.1| - 1.5e-43 149.5 12.0 2.2e-43 148.9 12.0 1.2 1 0 0 1 1 1 1 ABC transporter transmembrane region ABC_tran PF00005.27 gi|530549901|ref|YP_008430457.1| - 1.5e-35 122.7 0.0 2.7e-35 121.9 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_16 PF13191.6 gi|530549901|ref|YP_008430457.1| - 2.6e-05 24.6 0.0 5.9e-05 23.5 0.0 1.6 1 0 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|530549901|ref|YP_008430457.1| - 7.5e-05 22.4 0.0 0.00017 21.3 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_21 PF13304.6 gi|530549901|ref|YP_008430457.1| - 0.00042 20.2 0.6 0.28 11.0 0.0 2.4 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_30 PF13604.6 gi|530549901|ref|YP_008430457.1| - 0.00043 20.0 0.0 0.0012 18.6 0.0 1.7 1 0 0 1 1 1 1 AAA domain T2SSE PF00437.20 gi|530549901|ref|YP_008430457.1| - 0.00065 18.8 0.0 0.0015 17.6 0.0 1.6 1 0 0 1 1 1 1 Type II/IV secretion system protein NTPase_1 PF03266.15 gi|530549901|ref|YP_008430457.1| - 0.00083 19.3 0.5 0.0022 17.9 0.0 1.9 2 0 0 2 2 2 1 NTPase AAA_22 PF13401.6 gi|530549901|ref|YP_008430457.1| - 0.0014 18.9 0.0 0.0049 17.1 0.0 1.9 2 0 0 2 2 1 1 AAA domain AAA_18 PF13238.6 gi|530549901|ref|YP_008430457.1| - 0.0014 19.2 0.0 0.0039 17.7 0.0 1.8 1 0 0 1 1 1 1 AAA domain Rad17 PF03215.15 gi|530549901|ref|YP_008430457.1| - 0.0014 18.6 0.0 0.0036 17.3 0.0 1.6 1 0 0 1 1 1 1 Rad17 P-loop domain SMC_N PF02463.19 gi|530549901|ref|YP_008430457.1| - 0.0022 17.4 0.1 0.38 10.2 0.1 2.4 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA PF00004.29 gi|530549901|ref|YP_008430457.1| - 0.0023 18.4 0.1 0.012 16.1 0.1 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Zeta_toxin PF06414.12 gi|530549901|ref|YP_008430457.1| - 0.0045 16.3 0.0 0.015 14.6 0.0 1.8 1 0 0 1 1 1 1 Zeta toxin AAA_5 PF07728.14 gi|530549901|ref|YP_008430457.1| - 0.0075 16.3 0.0 0.021 14.8 0.0 1.8 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) cobW PF02492.19 gi|530549901|ref|YP_008430457.1| - 0.0086 15.7 0.1 0.062 12.9 0.0 2.1 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain ABC_membrane_3 PF13748.6 gi|530549901|ref|YP_008430457.1| - 0.01 15.1 2.5 0.041 13.1 0.3 2.3 2 0 0 2 2 2 0 ABC transporter transmembrane region DUF815 PF05673.13 gi|530549901|ref|YP_008430457.1| - 0.018 14.2 0.0 0.034 13.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_19 PF13245.6 gi|530549901|ref|YP_008430457.1| - 0.02 15.2 0.0 0.066 13.6 0.0 1.9 1 0 0 1 1 1 0 AAA domain RuvB_N PF05496.12 gi|530549901|ref|YP_008430457.1| - 0.02 14.6 0.1 0.073 12.8 0.0 1.9 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain AAA_28 PF13521.6 gi|530549901|ref|YP_008430457.1| - 0.021 15.1 0.0 0.043 14.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|530549901|ref|YP_008430457.1| - 0.024 14.4 0.0 0.04 13.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|530549901|ref|YP_008430457.1| - 0.031 14.2 0.1 0.096 12.6 0.0 1.8 2 0 0 2 2 1 0 NACHT domain AAA_23 PF13476.6 gi|530549901|ref|YP_008430457.1| - 0.048 14.2 0.1 0.11 13.0 0.1 1.5 1 0 0 1 1 1 0 AAA domain AAA_13 PF13166.6 gi|530549901|ref|YP_008430457.1| - 0.051 12.2 0.0 1.7 7.2 0.0 2.1 2 0 0 2 2 2 0 AAA domain ATPase_2 PF01637.18 gi|530549901|ref|YP_008430457.1| - 0.059 13.3 0.0 0.14 12.0 0.0 1.6 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_10 PF12846.7 gi|530549901|ref|YP_008430457.1| - 0.06 12.3 0.0 0.088 11.7 0.0 1.2 1 0 0 1 1 1 0 AAA-like domain Mg_chelatase PF01078.21 gi|530549901|ref|YP_008430457.1| - 0.068 12.5 0.0 0.13 11.7 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI DAP3 PF10236.9 gi|530549901|ref|YP_008430457.1| - 0.071 12.3 0.0 0.12 11.5 0.0 1.3 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 G-alpha PF00503.20 gi|530549901|ref|YP_008430457.1| - 0.073 12.2 0.0 0.11 11.6 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit MCM PF00493.23 gi|530549901|ref|YP_008430457.1| - 0.075 12.1 0.0 0.14 11.2 0.0 1.4 1 0 0 1 1 1 0 MCM P-loop domain AAA_33 PF13671.6 gi|530549901|ref|YP_008430457.1| - 0.081 13.1 0.1 0.25 11.5 0.0 1.8 2 0 0 2 2 1 0 AAA domain RuvA_C PF07499.13 gi|530549901|ref|YP_008430457.1| - 0.097 13.1 0.2 18 5.9 0.2 2.8 2 0 0 2 2 2 0 RuvA, C-terminal domain AAA_17 PF13207.6 gi|530549901|ref|YP_008430457.1| - 0.1 13.0 0.0 0.24 11.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain DUF3584 PF12128.8 gi|530549901|ref|YP_008430457.1| - 0.11 9.9 0.0 0.16 9.4 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) AAA_14 PF13173.6 gi|530549901|ref|YP_008430457.1| - 0.14 12.2 0.0 0.35 10.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain Viral_helicase1 PF01443.18 gi|530549901|ref|YP_008430457.1| - 0.17 11.6 0.0 0.26 11.0 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase RNA_helicase PF00910.22 gi|530549901|ref|YP_008430457.1| - 0.2 12.0 0.0 0.64 10.4 0.0 1.9 2 0 0 2 2 1 0 RNA helicase Phage_holin_3_6 PF07332.11 gi|530549902|ref|YP_008430458.1| - 5 7.2 13.8 1.1 9.3 1.8 2.4 1 1 0 2 2 2 0 Putative Actinobacterial Holin-X, holin superfamily III DUF4079 PF13301.6 gi|530549902|ref|YP_008430458.1| - 6 7.0 7.9 22 5.2 7.9 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF4079) CTP_transf_like PF01467.26 gi|530549903|ref|YP_008430459.1| - 3.5e-19 69.4 0.0 4.2e-18 65.9 0.0 2.2 1 1 0 1 1 1 1 Cytidylyltransferase-like HIGH_NTase1 PF05636.11 gi|530549903|ref|YP_008430459.1| - 0.0023 17.2 0.0 0.75 8.9 0.0 2.1 2 0 0 2 2 2 2 HIGH Nucleotidyl Transferase SAM_adeno_trans PF01887.16 gi|530549904|ref|YP_008430460.1| - 4.9e-79 265.1 0.0 5.5e-79 264.9 0.0 1.0 1 0 0 1 1 1 1 S-adenosyl-l-methionine hydroxide adenosyltransferase PDZ_6 PF17820.1 gi|530549904|ref|YP_008430460.1| - 0.14 12.0 0.1 0.28 11.1 0.1 1.4 1 0 0 1 1 1 0 PDZ domain Transglut_core PF01841.19 gi|530549905|ref|YP_008430461.1| - 1.1e-07 32.3 0.0 2.1e-07 31.4 0.0 1.4 1 0 0 1 1 1 1 Transglutaminase-like superfamily N_BRCA1_IG PF16158.5 gi|530549905|ref|YP_008430461.1| - 3.1e-05 24.6 0.0 0.11 13.2 0.0 2.6 2 0 0 2 2 2 2 Ig-like domain from next to BRCA1 gene NPCBM_assoc PF10633.9 gi|530549905|ref|YP_008430461.1| - 0.00036 20.7 0.0 0.13 12.5 0.0 2.5 2 0 0 2 2 2 2 NPCBM-associated, NEW3 domain of alpha-galactosidase CARDB PF07705.11 gi|530549905|ref|YP_008430461.1| - 0.001 19.3 0.0 2.4 8.5 0.0 2.5 2 0 0 2 2 2 2 CARDB DUF11 PF01345.18 gi|530549905|ref|YP_008430461.1| - 0.16 12.3 0.1 14 6.1 0.0 2.5 2 0 0 2 2 2 0 Domain of unknown function DUF11 Trm56 PF01994.16 gi|530549906|ref|YP_008430462.1| - 4.7e-52 174.9 0.3 7.6e-52 174.3 0.3 1.3 1 0 0 1 1 1 1 tRNA ribose 2'-O-methyltransferase, aTrm56 SpoU_methylase PF00588.19 gi|530549906|ref|YP_008430462.1| - 0.0059 16.8 0.2 0.01 16.0 0.0 1.5 2 0 0 2 2 2 1 SpoU rRNA Methylase family Peptidase_C3 PF00548.20 gi|530549906|ref|YP_008430462.1| - 0.016 15.1 0.1 0.084 12.8 0.0 1.9 2 0 0 2 2 2 0 3C cysteine protease (picornain 3C) CDP-OH_P_transf PF01066.21 gi|530549907|ref|YP_008430463.1| - 4.4e-14 53.0 1.2 4.4e-14 53.0 1.2 1.9 2 1 0 2 2 2 1 CDP-alcohol phosphatidyltransferase HAD_2 PF13419.6 gi|530549908|ref|YP_008430464.1| - 4.1e-30 105.2 0.3 6.3e-30 104.6 0.3 1.3 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|530549908|ref|YP_008430464.1| - 3.1e-19 70.1 0.0 8.1e-19 68.7 0.0 1.7 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|530549908|ref|YP_008430464.1| - 2.5e-09 37.1 0.0 2.9e-08 33.7 0.0 2.2 2 0 0 2 2 2 1 HAD-hyrolase-like HAD PF12710.7 gi|530549908|ref|YP_008430464.1| - 4.4e-09 37.0 0.0 6.3e-09 36.5 0.0 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Mad3_BUB1_I PF08311.12 gi|530549908|ref|YP_008430464.1| - 0.001 19.1 0.2 0.0036 17.3 0.3 1.8 2 0 0 2 2 2 1 Mad3/BUB1 homology region 1 Hydrolase_6 PF13344.6 gi|530549908|ref|YP_008430464.1| - 0.015 15.4 0.0 0.074 13.2 0.0 2.1 2 1 0 2 2 2 0 Haloacid dehalogenase-like hydrolase 5_nucleotid PF05761.14 gi|530549908|ref|YP_008430464.1| - 0.015 14.2 0.0 0.35 9.7 0.0 2.2 1 1 1 2 2 2 0 5' nucleotidase family Put_Phosphatase PF06888.12 gi|530549908|ref|YP_008430464.1| - 0.018 14.4 0.1 0.74 9.2 0.0 2.8 3 0 0 3 3 3 0 Putative Phosphatase PGM_PMM_II PF02879.16 gi|530549908|ref|YP_008430464.1| - 0.087 13.5 0.0 0.53 10.9 0.0 2.2 1 1 1 2 2 2 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AsnC_trans_reg PF01037.21 gi|530549909|ref|YP_008430465.1| - 9.9e-05 22.2 0.0 0.00012 22.0 0.0 1.2 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain ASCH PF04266.14 gi|530549910|ref|YP_008430466.1| - 3.6e-18 66.1 0.3 2.2e-17 63.6 0.1 1.9 2 0 0 2 2 2 1 ASCH domain SAP30_Sin3_bdg PF13867.6 gi|530549910|ref|YP_008430466.1| - 0.00055 20.2 0.4 0.0037 17.6 0.1 2.3 2 0 0 2 2 2 1 Sin3 binding region of histone deacetylase complex subunit SAP30 M20_dimer PF07687.14 gi|530549910|ref|YP_008430466.1| - 0.11 12.5 0.0 0.63 10.0 0.0 2.1 1 1 1 2 2 2 0 Peptidase dimerisation domain ASCH PF04266.14 gi|530549911|ref|YP_008430467.1| - 5.3e-14 52.7 0.3 6.3e-14 52.4 0.3 1.1 1 0 0 1 1 1 1 ASCH domain Class_IIIsignal PF04021.12 gi|530549912|ref|YP_008430468.1| - 8.7e-08 31.9 2.0 1.2e-07 31.4 2.0 1.3 1 0 0 1 1 1 1 Class III signal peptide Baculo_11_kDa PF06143.11 gi|530549912|ref|YP_008430468.1| - 0.03 13.9 1.0 0.027 14.0 1.0 1.1 1 0 0 1 1 1 0 Baculovirus 11 kDa family Spem1 PF15670.5 gi|530549912|ref|YP_008430468.1| - 0.039 13.5 0.1 0.041 13.5 0.1 1.0 1 0 0 1 1 1 0 Spermatid maturation protein 1 Arc_PepC PF06819.11 gi|530549913|ref|YP_008430469.1| - 1.1e-29 102.8 1.2 1.6e-29 102.3 1.2 1.2 1 0 0 1 1 1 1 Archaeal Peptidase A24 C-terminal Domain Arc_PepC_II PF06847.11 gi|530549913|ref|YP_008430469.1| - 1.2e-06 29.0 0.0 4.1e-06 27.2 0.0 2.0 1 0 0 1 1 1 1 Archaeal Peptidase A24 C-terminus Type II Peptidase_A24 PF01478.18 gi|530549913|ref|YP_008430469.1| - 1.5e-06 28.5 9.2 1.5e-06 28.5 9.2 2.6 3 0 0 3 3 3 1 Type IV leader peptidase family HAD PF12710.7 gi|530549914|ref|YP_008430470.1| - 1.3e-18 68.1 0.1 1.5e-18 67.8 0.1 1.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|530549914|ref|YP_008430470.1| - 2.4e-15 57.4 0.0 1.2e-14 55.1 0.0 1.8 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|530549914|ref|YP_008430470.1| - 1.4e-08 34.8 0.0 1.9e-06 27.8 0.0 2.7 3 0 0 3 3 3 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|530549914|ref|YP_008430470.1| - 1.8e-07 31.4 0.0 3.6e-06 27.2 0.0 2.5 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase UMPH-1 PF05822.12 gi|530549914|ref|YP_008430470.1| - 0.0058 16.2 0.0 0.0084 15.6 0.0 1.3 1 0 0 1 1 1 1 Pyrimidine 5'-nucleotidase (UMPH-1) Put_Phosphatase PF06888.12 gi|530549914|ref|YP_008430470.1| - 0.01 15.3 0.0 0.058 12.8 0.0 2.0 1 1 0 1 1 1 0 Putative Phosphatase Acid_PPase PF12689.7 gi|530549914|ref|YP_008430470.1| - 0.045 13.6 0.0 0.1 12.5 0.0 1.6 1 1 0 1 1 1 0 Acid Phosphatase DUF4392 PF14336.6 gi|530549914|ref|YP_008430470.1| - 0.082 12.3 0.0 0.12 11.8 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4392) S6PP PF05116.13 gi|530549914|ref|YP_008430470.1| - 0.13 11.8 0.0 0.3 10.6 0.0 1.7 2 0 0 2 2 2 0 Sucrose-6F-phosphate phosphohydrolase PCMT PF01135.19 gi|530549915|ref|YP_008430471.1| - 8e-69 231.6 0.0 9e-69 231.4 0.0 1.0 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_31 PF13847.6 gi|530549915|ref|YP_008430471.1| - 2.1e-07 30.9 0.0 2.9e-07 30.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|530549915|ref|YP_008430471.1| - 1.8e-06 28.6 0.0 2.8e-06 27.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 gi|530549915|ref|YP_008430471.1| - 1.6e-05 24.1 0.0 2.1e-05 23.7 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_23 PF13489.6 gi|530549915|ref|YP_008430471.1| - 3.8e-05 23.6 0.0 5.2e-05 23.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_3 PF01596.17 gi|530549915|ref|YP_008430471.1| - 0.00019 20.7 0.0 0.00042 19.6 0.0 1.5 1 1 0 1 1 1 1 O-methyltransferase Methyltransf_11 PF08241.12 gi|530549915|ref|YP_008430471.1| - 0.00031 21.3 0.0 0.00053 20.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain GCD14 PF08704.10 gi|530549915|ref|YP_008430471.1| - 0.0017 18.1 0.0 0.0023 17.7 0.0 1.1 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit CMAS PF02353.20 gi|530549915|ref|YP_008430471.1| - 0.002 17.5 0.0 0.0031 16.9 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_18 PF12847.7 gi|530549915|ref|YP_008430471.1| - 0.0042 17.0 0.0 0.0067 16.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_24 PF13578.6 gi|530549915|ref|YP_008430471.1| - 0.017 16.2 0.0 0.025 15.6 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Met_10 PF02475.16 gi|530549915|ref|YP_008430471.1| - 0.018 14.8 0.0 0.03 14.1 0.0 1.3 1 0 0 1 1 1 0 Met-10+ like-protein PrmA PF06325.13 gi|530549915|ref|YP_008430471.1| - 0.05 13.0 0.0 0.073 12.4 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) MTS PF05175.14 gi|530549915|ref|YP_008430471.1| - 0.061 12.9 0.0 0.096 12.2 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain Methyltransf_16 PF10294.9 gi|530549915|ref|YP_008430471.1| - 0.095 12.4 0.0 0.13 11.9 0.0 1.2 1 0 0 1 1 1 0 Lysine methyltransferase UPF0020 PF01170.18 gi|530549915|ref|YP_008430471.1| - 0.12 12.0 0.0 0.2 11.3 0.0 1.4 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 TF_Zn_Ribbon PF08271.12 gi|530549916|ref|YP_008430472.1| - 6.9e-05 22.3 2.0 0.00019 20.9 2.0 1.7 1 1 0 1 1 1 1 TFIIB zinc-binding Zn_Tnp_IS1595 PF12760.7 gi|530549916|ref|YP_008430472.1| - 0.00031 20.6 0.9 0.00055 19.9 0.9 1.4 1 0 0 1 1 1 1 Transposase zinc-ribbon domain zinc_ribbon_4 PF13717.6 gi|530549916|ref|YP_008430472.1| - 0.00039 20.3 3.4 0.0028 17.5 3.4 2.4 1 1 0 1 1 1 1 zinc-ribbon domain Elf1 PF05129.13 gi|530549916|ref|YP_008430472.1| - 0.00065 19.7 0.5 0.0012 18.8 0.1 1.7 2 0 0 2 2 1 1 Transcription elongation factor Elf1 like eIF-5_eIF-2B PF01873.17 gi|530549916|ref|YP_008430472.1| - 0.00089 19.1 0.9 0.00089 19.1 0.9 1.6 2 0 0 2 2 1 1 Domain found in IF2B/IF5 UPF0547 PF10571.9 gi|530549916|ref|YP_008430472.1| - 0.0042 17.1 5.7 0.037 14.1 0.2 2.4 2 0 0 2 2 2 1 Uncharacterised protein family UPF0547 DUF951 PF06107.11 gi|530549916|ref|YP_008430472.1| - 0.008 16.1 0.3 0.008 16.1 0.3 2.3 3 0 0 3 3 2 1 Bacterial protein of unknown function (DUF951) zinc_ribbon_5 PF13719.6 gi|530549916|ref|YP_008430472.1| - 0.014 15.2 2.4 0.028 14.2 1.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|530549916|ref|YP_008430472.1| - 0.016 14.6 0.9 5.1 6.6 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain TFIIS_C PF01096.18 gi|530549916|ref|YP_008430472.1| - 0.021 14.7 3.5 0.4 10.6 3.5 2.1 1 1 0 1 1 1 0 Transcription factor S-II (TFIIS) DUF3006 PF11213.8 gi|530549916|ref|YP_008430472.1| - 0.024 14.9 2.7 0.62 10.3 0.6 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3006) Ribosomal_L27A PF00828.19 gi|530549916|ref|YP_008430472.1| - 0.026 15.2 0.1 0.048 14.3 0.1 1.4 1 0 0 1 1 1 0 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A Nudix_N_2 PF14803.6 gi|530549916|ref|YP_008430472.1| - 0.041 13.8 3.0 0.089 12.7 3.0 1.5 1 0 0 1 1 1 0 Nudix N-terminal PhnA_Zn_Ribbon PF08274.12 gi|530549916|ref|YP_008430472.1| - 0.046 13.7 4.9 0.33 10.9 0.6 2.3 2 0 0 2 2 2 0 PhnA Zinc-Ribbon OrfB_Zn_ribbon PF07282.11 gi|530549916|ref|YP_008430472.1| - 0.054 13.4 1.0 0.1 12.6 1.0 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain PTSIIA_gutA PF03829.13 gi|530549916|ref|YP_008430472.1| - 0.073 12.9 0.5 6.5 6.7 0.0 2.5 3 0 0 3 3 2 0 PTS system glucitol/sorbitol-specific IIA component DUF4379 PF14311.6 gi|530549916|ref|YP_008430472.1| - 0.09 13.2 2.2 0.14 12.5 1.0 1.9 1 1 1 2 2 2 0 Probable Zinc-ribbon domain CcmF_C PF16327.5 gi|530549916|ref|YP_008430472.1| - 0.094 12.0 0.0 0.16 11.2 0.0 1.3 1 1 0 1 1 1 0 Cytochrome c-type biogenesis protein CcmF C-terminal Ribosomal_S17 PF00366.20 gi|530549916|ref|YP_008430472.1| - 0.11 12.6 0.5 0.35 11.0 0.0 2.1 3 0 0 3 3 1 0 Ribosomal protein S17 Lar_restr_allev PF14354.6 gi|530549916|ref|YP_008430472.1| - 0.11 12.9 0.2 0.19 12.2 0.2 1.4 1 0 0 1 1 1 0 Restriction alleviation protein Lar DZR PF12773.7 gi|530549916|ref|YP_008430472.1| - 0.11 12.5 0.2 0.2 11.7 0.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon Zn-ribbon_8 PF09723.10 gi|530549916|ref|YP_008430472.1| - 0.12 12.5 3.8 4.2 7.6 0.4 2.4 1 1 0 2 2 2 0 Zinc ribbon domain FdhE PF04216.12 gi|530549916|ref|YP_008430472.1| - 0.15 12.0 0.6 0.21 11.4 0.6 1.2 1 0 0 1 1 1 0 Protein involved in formate dehydrogenase formation zinc_ribbon_10 PF10058.9 gi|530549916|ref|YP_008430472.1| - 0.17 11.7 0.9 0.4 10.4 0.9 1.6 1 1 0 1 1 1 0 Predicted integral membrane zinc-ribbon metal-binding protein HypA PF01155.19 gi|530549916|ref|YP_008430472.1| - 0.17 11.9 3.5 0.88 9.6 0.1 2.6 2 1 1 3 3 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DUF1610 PF07754.11 gi|530549916|ref|YP_008430472.1| - 0.19 11.8 2.6 1.6 8.8 0.5 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) zf_UBZ PF18439.1 gi|530549916|ref|YP_008430472.1| - 0.21 11.2 1.6 4.4 7.0 0.2 2.3 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger zinc_ribbon_2 PF13240.6 gi|530549916|ref|YP_008430472.1| - 0.3 10.9 2.6 10 6.0 0.4 2.5 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_12 PF11331.8 gi|530549916|ref|YP_008430472.1| - 0.48 10.3 1.8 1.2 8.9 1.8 1.8 1 1 0 1 1 1 0 Probable zinc-ribbon domain DUF35_N PF12172.8 gi|530549916|ref|YP_008430472.1| - 0.59 10.1 4.0 8.2 6.4 0.3 2.3 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-RRN7 PF11781.8 gi|530549916|ref|YP_008430472.1| - 0.72 9.6 3.4 4.3 7.1 0.2 2.3 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Rubredoxin_2 PF18073.1 gi|530549916|ref|YP_008430472.1| - 0.75 9.6 3.6 18 5.2 0.1 2.3 2 0 0 2 2 2 0 Rubredoxin metal binding domain DNA_ligase_ZBD PF03119.16 gi|530549916|ref|YP_008430472.1| - 1.2 9.2 4.9 3.4 7.8 4.9 1.8 1 1 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain A2L_zn_ribbon PF08792.10 gi|530549916|ref|YP_008430472.1| - 1.5 8.7 4.0 2.3 8.1 0.6 2.3 1 1 1 2 2 2 0 A2L zinc ribbon domain DNA_RNApol_7kD PF03604.13 gi|530549916|ref|YP_008430472.1| - 1.5 8.5 4.9 9.4 6.0 4.9 2.3 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit zf-NADH-PPase PF09297.11 gi|530549916|ref|YP_008430472.1| - 1.8 8.3 5.2 45 3.8 5.2 2.2 1 1 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain zf-ACC PF17848.1 gi|530549916|ref|YP_008430472.1| - 2.7 8.2 5.0 6.5 6.9 0.5 3.0 3 0 0 3 3 3 0 Acetyl-coA carboxylase zinc finger domain MarR_2 PF12802.7 gi|530549917|ref|YP_008430473.1| - 9.6e-08 31.8 0.0 1.8e-07 30.9 0.0 1.4 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|530549917|ref|YP_008430473.1| - 3.5e-07 30.0 0.6 7.2e-07 29.0 0.6 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|530549917|ref|YP_008430473.1| - 9.7e-07 28.6 0.0 2e-06 27.6 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 gi|530549917|ref|YP_008430473.1| - 8e-06 25.6 0.1 1.4e-05 24.8 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family DprA_WH PF17782.1 gi|530549917|ref|YP_008430473.1| - 0.00011 22.3 0.0 0.00015 21.8 0.0 1.2 1 0 0 1 1 1 1 DprA winged helix domain HTH_27 PF13463.6 gi|530549917|ref|YP_008430473.1| - 0.00012 22.5 0.2 0.00024 21.5 0.2 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_Crp_2 PF13545.6 gi|530549917|ref|YP_008430473.1| - 0.00051 20.0 0.1 0.00092 19.1 0.1 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain DUF3857 PF12969.7 gi|530549917|ref|YP_008430473.1| - 0.00088 19.4 0.3 0.0018 18.4 0.1 1.6 1 1 0 1 1 1 1 Domain of Unknown Function with PDB structure (DUF3857) HTH_24 PF13412.6 gi|530549917|ref|YP_008430473.1| - 0.00098 18.6 0.0 0.0016 17.9 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|530549917|ref|YP_008430473.1| - 0.0015 18.6 0.1 0.0023 17.9 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|530549917|ref|YP_008430473.1| - 0.005 16.6 0.0 0.0077 16.0 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain DUF2250 PF10007.9 gi|530549917|ref|YP_008430473.1| - 0.0099 16.0 0.2 0.022 14.8 0.2 1.5 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) Penicillinase_R PF03965.16 gi|530549917|ref|YP_008430473.1| - 0.11 12.9 0.1 0.22 11.9 0.1 1.4 1 0 0 1 1 1 0 Penicillinase repressor PAPS_reduct PF01507.19 gi|530549918|ref|YP_008430474.1| - 6.6e-46 156.5 0.0 1.6e-44 152.0 0.0 2.5 2 0 0 2 2 2 1 Phosphoadenosine phosphosulfate reductase family PUA PF01472.20 gi|530549918|ref|YP_008430474.1| - 5.6e-12 45.4 1.3 5.6e-12 45.4 1.3 1.9 2 0 0 2 2 2 1 PUA domain Fer4_7 PF12838.7 gi|530549918|ref|YP_008430474.1| - 4e-10 40.1 12.4 1.4e-09 38.4 12.4 2.0 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|530549918|ref|YP_008430474.1| - 1.3e-09 37.4 16.2 0.00013 21.6 3.9 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|530549918|ref|YP_008430474.1| - 3.9e-08 33.3 10.6 1.2e-07 31.7 10.6 1.9 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|530549918|ref|YP_008430474.1| - 3.1e-07 30.2 15.4 1.4e-05 25.0 2.4 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|530549918|ref|YP_008430474.1| - 3.4e-07 30.3 25.8 1.7e-05 24.8 14.2 2.3 2 1 1 3 3 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|530549918|ref|YP_008430474.1| - 1.1e-06 28.9 6.8 0.011 16.2 1.4 3.0 3 0 0 3 3 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|530549918|ref|YP_008430474.1| - 1.8e-06 27.7 10.0 0.00086 19.3 1.6 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|530549918|ref|YP_008430474.1| - 2.7e-06 27.4 10.8 2.7e-06 27.4 10.8 2.1 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|530549918|ref|YP_008430474.1| - 4.6e-06 27.1 8.3 0.0064 17.0 0.2 3.0 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|530549918|ref|YP_008430474.1| - 0.0018 19.2 17.9 0.029 15.3 3.6 3.8 3 1 1 4 4 4 2 4Fe-4S double cluster binding domain Fer4_13 PF13370.6 gi|530549918|ref|YP_008430474.1| - 0.0057 17.2 8.3 0.18 12.3 1.5 2.9 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_3 PF12798.7 gi|530549918|ref|YP_008430474.1| - 0.017 16.0 3.7 0.017 16.0 3.7 3.1 3 0 0 3 3 2 0 4Fe-4S binding domain QueC PF06508.13 gi|530549918|ref|YP_008430474.1| - 0.08 12.4 0.7 0.18 11.3 0.0 1.9 2 0 0 2 2 1 0 Queuosine biosynthesis protein QueC ATP_bind_3 PF01171.20 gi|530549918|ref|YP_008430474.1| - 0.1 12.3 0.0 0.24 11.2 0.0 1.6 1 0 0 1 1 1 0 PP-loop family Fer4_22 PF17179.4 gi|530549918|ref|YP_008430474.1| - 0.16 12.9 11.4 0.16 12.8 0.4 3.2 4 0 0 4 4 2 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|530549918|ref|YP_008430474.1| - 0.46 11.1 23.7 0.14 12.7 1.8 3.2 4 0 0 4 4 3 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|530549918|ref|YP_008430474.1| - 0.84 9.9 16.2 0.3 11.3 2.6 3.1 2 1 1 3 3 3 0 4Fe-4S dicluster domain Arm-DNA-bind_5 PF17293.2 gi|530549918|ref|YP_008430474.1| - 8.8 6.9 9.6 18 5.9 0.1 3.4 3 0 0 3 3 3 0 Arm DNA-binding domain DUF1495 PF07381.11 gi|530549919|ref|YP_008430475.1| - 2e-13 50.0 0.0 5.7e-13 48.5 0.0 1.8 1 0 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) Methyltransf_31 PF13847.6 gi|530549919|ref|YP_008430475.1| - 3.8e-13 49.5 0.0 8.4e-13 48.4 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|530549919|ref|YP_008430475.1| - 2e-12 46.9 0.0 5.2e-12 45.6 0.0 1.6 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.6 gi|530549919|ref|YP_008430475.1| - 7.4e-12 45.4 0.0 1.3e-11 44.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|530549919|ref|YP_008430475.1| - 8.1e-12 45.8 0.0 2e-11 44.5 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|530549919|ref|YP_008430475.1| - 6.5e-11 42.8 0.0 1.4e-10 41.8 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|530549919|ref|YP_008430475.1| - 1.2e-10 41.9 0.0 2.9e-10 40.7 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|530549919|ref|YP_008430475.1| - 1.8e-08 34.4 0.0 3e-08 33.7 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) TehB PF03848.14 gi|530549919|ref|YP_008430475.1| - 5.5e-06 25.9 0.0 9e-06 25.2 0.0 1.3 1 0 0 1 1 1 1 Tellurite resistance protein TehB MTS PF05175.14 gi|530549919|ref|YP_008430475.1| - 1.5e-05 24.6 0.0 5e-05 22.9 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase small domain NodS PF05401.11 gi|530549919|ref|YP_008430475.1| - 0.00019 21.1 0.0 0.00031 20.4 0.0 1.3 1 0 0 1 1 1 1 Nodulation protein S (NodS) PrmA PF06325.13 gi|530549919|ref|YP_008430475.1| - 0.0015 18.0 0.0 0.0025 17.3 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) CMAS PF02353.20 gi|530549919|ref|YP_008430475.1| - 0.072 12.4 0.0 0.14 11.4 0.0 1.4 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase HTH_15 PF12324.8 gi|530549919|ref|YP_008430475.1| - 0.078 12.9 0.0 0.21 11.5 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain of alkylmercury lyase HTH_5 PF01022.20 gi|530549919|ref|YP_008430475.1| - 0.1 12.5 0.0 0.63 9.9 0.0 2.3 3 0 0 3 3 3 0 Bacterial regulatory protein, arsR family DDE_Tnp_IS66 PF03050.14 gi|530549921|ref|YP_008430477.1| - 0.0041 16.6 0.0 0.0043 16.6 0.0 1.1 1 0 0 1 1 1 1 Transposase IS66 family DUF4139 PF13598.6 gi|530549923|ref|YP_008430479.1| - 1.7e-05 24.6 0.0 0.00037 20.3 0.0 2.3 1 1 0 1 1 1 1 Domain of unknown function (DUF4139) LSM PF01423.22 gi|530549923|ref|YP_008430479.1| - 0.04 13.6 1.0 0.15 11.8 0.0 2.4 2 0 0 2 2 2 0 LSM domain ATP-grasp_5 PF13549.6 gi|530549924|ref|YP_008430480.1| - 3.1e-84 281.9 0.3 3.5e-84 281.7 0.3 1.0 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_2 PF08442.10 gi|530549924|ref|YP_008430480.1| - 1.2e-09 38.1 0.3 1.9e-09 37.4 0.3 1.4 1 1 0 1 1 1 1 ATP-grasp domain ATP-grasp PF02222.22 gi|530549924|ref|YP_008430480.1| - 0.00016 21.3 0.0 0.00026 20.6 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain GARS_A PF01071.19 gi|530549924|ref|YP_008430480.1| - 0.0002 21.2 0.0 0.00042 20.2 0.0 1.5 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CPSase_L_D2 PF02786.17 gi|530549924|ref|YP_008430480.1| - 0.00044 19.8 0.1 0.00099 18.7 0.1 1.7 1 1 1 2 2 2 1 Carbamoyl-phosphate synthase L chain, ATP binding domain DUF5126 PF17166.4 gi|530549924|ref|YP_008430480.1| - 0.018 14.9 0.0 0.031 14.1 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF5126) RimK PF08443.11 gi|530549924|ref|YP_008430480.1| - 0.04 13.5 0.0 0.07 12.7 0.0 1.4 1 0 0 1 1 1 0 RimK-like ATP-grasp domain Fer4_NifH PF00142.18 gi|530549924|ref|YP_008430480.1| - 0.081 12.4 0.1 0.13 11.7 0.1 1.3 1 0 0 1 1 1 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family PI_PP_C PF18365.1 gi|530549924|ref|YP_008430480.1| - 0.18 11.8 0.0 0.32 11.0 0.0 1.3 1 0 0 1 1 1 0 Phosphoinositide phosphatase C-terminal domain GCHY-1 PF02649.14 gi|530549925|ref|YP_008430481.1| - 3.3e-66 223.4 6.1 3.7e-66 223.3 6.1 1.0 1 0 0 1 1 1 1 Type I GTP cyclohydrolase folE2 DUF4129 PF13559.6 gi|530549926|ref|YP_008430482.1| - 1.9e-06 28.0 0.0 5.9e-05 23.3 0.0 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF4129) Syntaxin-6_N PF09177.11 gi|530549926|ref|YP_008430482.1| - 0.0043 17.6 0.0 0.007 16.9 0.0 1.3 1 0 0 1 1 1 1 Syntaxin 6, N-terminal Ribosomal_L33 PF00471.20 gi|530549926|ref|YP_008430482.1| - 0.073 13.5 0.0 0.19 12.2 0.0 1.6 1 0 0 1 1 1 0 Ribosomal protein L33 DUF1129 PF06570.11 gi|530549926|ref|YP_008430482.1| - 0.16 11.4 2.0 0.28 10.7 2.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1129) DUF2142 PF09913.9 gi|530549926|ref|YP_008430482.1| - 0.29 10.0 8.7 9.8 4.9 8.7 2.0 1 1 0 1 1 1 0 Predicted membrane protein (DUF2142) DUF3810 PF12725.7 gi|530549926|ref|YP_008430482.1| - 1.5 8.1 5.1 0.82 9.0 2.3 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3810) RDD PF06271.12 gi|530549926|ref|YP_008430482.1| - 3.2 7.9 9.0 15 5.8 3.8 2.2 2 0 0 2 2 2 0 RDD family DUF1699 PF08004.11 gi|530549927|ref|YP_008430483.1| - 1.5e-07 31.1 0.1 2.8e-07 30.3 0.1 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF1699) HTH_23 PF13384.6 gi|530549927|ref|YP_008430483.1| - 9.4e-06 25.3 0.0 1.9e-05 24.3 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_7 PF02796.15 gi|530549927|ref|YP_008430483.1| - 3.2e-05 23.9 0.1 6.1e-05 23.0 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase HTH_32 PF13565.6 gi|530549927|ref|YP_008430483.1| - 0.00018 22.0 0.1 0.0005 20.6 0.0 1.8 2 1 0 2 2 2 1 Homeodomain-like domain HTH_29 PF13551.6 gi|530549927|ref|YP_008430483.1| - 0.00058 19.8 0.0 1.2 9.2 0.0 2.2 1 1 1 2 2 2 2 Winged helix-turn helix TrmB PF01978.19 gi|530549927|ref|YP_008430483.1| - 0.0008 19.3 0.7 0.069 13.0 0.0 3.0 3 1 0 3 3 3 1 Sugar-specific transcriptional regulator TrmB HTH_28 PF13518.6 gi|530549927|ref|YP_008430483.1| - 0.00095 19.2 0.0 0.0042 17.2 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|530549927|ref|YP_008430483.1| - 0.00099 18.6 0.2 0.0034 16.9 0.0 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_3 PF01381.22 gi|530549927|ref|YP_008430483.1| - 0.0064 16.5 1.3 0.34 11.0 0.0 3.2 4 0 0 4 4 4 1 Helix-turn-helix MerR_1 PF13411.6 gi|530549927|ref|YP_008430483.1| - 0.017 15.2 0.0 0.039 14.0 0.0 1.6 1 0 0 1 1 1 0 MerR HTH family regulatory protein DUF498 PF04430.14 gi|530549927|ref|YP_008430483.1| - 0.022 14.8 0.0 0.035 14.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF498/DUF598) HTH_38 PF13936.6 gi|530549927|ref|YP_008430483.1| - 0.046 13.5 0.4 0.11 12.3 0.1 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|530549927|ref|YP_008430483.1| - 0.051 13.2 0.0 0.14 11.8 0.0 1.7 1 0 0 1 1 1 0 Sigma-70, region 4 GerE PF00196.19 gi|530549927|ref|YP_008430483.1| - 0.07 12.7 0.0 0.14 11.7 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family HTH_40 PF14493.6 gi|530549927|ref|YP_008430483.1| - 0.075 13.5 0.3 1.9 9.0 0.0 2.6 2 1 1 3 3 3 0 Helix-turn-helix domain IF2_N PF04760.15 gi|530549927|ref|YP_008430483.1| - 0.086 12.7 1.8 1.5 8.7 0.2 2.7 3 0 0 3 3 3 0 Translation initiation factor IF-2, N-terminal region HTH_11 PF08279.12 gi|530549927|ref|YP_008430483.1| - 0.12 12.4 0.4 1.5 8.8 0.1 2.4 2 0 0 2 2 2 0 HTH domain DUF530 PF04409.12 gi|530549928|ref|YP_008430484.1| - 1.6e-25 89.5 14.1 1.2e-19 70.1 6.5 3.8 1 1 1 2 2 2 2 Protein of unknown function (DUF530) TP6A_N PF04406.14 gi|530549929|ref|YP_008430485.1| - 1.3e-19 69.9 0.0 2.3e-19 69.2 0.0 1.4 1 0 0 1 1 1 1 Type IIB DNA topoisomerase DUF2399 PF09664.10 gi|530549929|ref|YP_008430485.1| - 0.0024 17.8 0.0 0.0046 16.9 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function C-terminus (DUF2399) Topo-VIb_trans PF09239.11 gi|530549930|ref|YP_008430486.1| - 6.4e-56 188.6 0.0 1.1e-55 187.8 0.0 1.4 1 0 0 1 1 1 1 Topoisomerase VI B subunit, transducer HATPase_c PF02518.26 gi|530549930|ref|YP_008430486.1| - 4.8e-11 43.2 0.2 9.6e-11 42.2 0.2 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.6 gi|530549930|ref|YP_008430486.1| - 1.3e-09 38.0 0.0 2.6e-09 37.0 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KH_1 PF00013.29 gi|530549931|ref|YP_008430487.1| - 3.4e-17 62.0 9.4 7.7e-10 38.5 0.4 2.3 2 0 0 2 2 2 2 KH domain KH_8 PF17903.1 gi|530549931|ref|YP_008430487.1| - 2.7e-08 33.8 0.0 4.7e-08 33.0 0.0 1.4 1 0 0 1 1 1 1 Krr1 KH1 domain KH_2 PF07650.17 gi|530549931|ref|YP_008430487.1| - 6.1e-07 29.2 9.7 4.2e-05 23.3 1.9 2.6 2 1 0 2 2 2 2 KH domain KH_4 PF13083.6 gi|530549931|ref|YP_008430487.1| - 0.0024 17.7 7.3 0.052 13.4 0.6 2.8 2 1 0 2 2 2 2 KH domain KH_5 PF13184.6 gi|530549931|ref|YP_008430487.1| - 0.93 9.6 6.3 7.2 6.8 0.4 2.5 2 0 0 2 2 2 0 NusA-like KH domain RIO1 PF01163.22 gi|530549932|ref|YP_008430488.1| - 1e-53 181.8 0.1 1.6e-53 181.1 0.1 1.3 1 0 0 1 1 1 1 RIO1 family APH PF01636.23 gi|530549932|ref|YP_008430488.1| - 0.00025 21.1 0.0 0.0017 18.3 0.0 2.0 1 1 1 2 2 2 1 Phosphotransferase enzyme family Pkinase PF00069.25 gi|530549932|ref|YP_008430488.1| - 0.015 14.7 0.0 0.05 13.0 0.0 1.9 1 1 0 1 1 1 0 Protein kinase domain Pkinase_fungal PF17667.1 gi|530549932|ref|YP_008430488.1| - 0.062 12.1 0.0 0.1 11.4 0.0 1.4 1 0 0 1 1 1 0 Fungal protein kinase eIF-1a PF01176.19 gi|530549933|ref|YP_008430489.1| - 1.2e-22 79.5 1.3 1.9e-22 78.9 1.3 1.3 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 RsgA_N PF16745.5 gi|530549933|ref|YP_008430489.1| - 2.2e-06 27.3 0.2 3.5e-06 26.7 0.2 1.4 1 0 0 1 1 1 1 RsgA N-terminal domain DUF4863 PF16155.5 gi|530549933|ref|YP_008430489.1| - 0.15 11.9 0.0 0.19 11.6 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4863) AAA_17 PF13207.6 gi|530549934|ref|YP_008430490.1| - 0.003 18.0 0.0 0.0076 16.7 0.0 1.7 2 0 0 2 2 2 1 AAA domain SRP54_N PF02881.19 gi|530549934|ref|YP_008430490.1| - 0.44 10.8 2.5 0.7 10.2 0.7 2.3 3 0 0 3 3 3 0 SRP54-type protein, helical bundle domain ELFV_dehydrog PF00208.21 gi|530549935|ref|YP_008430491.1| - 1.8e-76 257.1 2.4 2.7e-76 256.5 2.4 1.2 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.18 gi|530549935|ref|YP_008430491.1| - 9.9e-54 180.7 0.1 2.8e-53 179.3 0.0 1.8 2 0 0 2 2 2 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.19 gi|530549935|ref|YP_008430491.1| - 2.2e-05 23.9 0.1 4.9e-05 22.8 0.1 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.12 gi|530549935|ref|YP_008430491.1| - 0.037 13.6 0.0 0.16 11.5 0.1 2.1 2 0 0 2 2 2 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain Gp_dh_N PF00044.24 gi|530549935|ref|YP_008430491.1| - 0.1 13.0 0.0 0.2 12.0 0.0 1.6 1 0 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain SNF PF00209.18 gi|530549936|ref|YP_008430492.1| - 5e-24 84.9 13.3 8.6e-24 84.1 13.3 1.3 1 1 0 1 1 1 1 Sodium:neurotransmitter symporter family DUF938 PF06080.12 gi|530549936|ref|YP_008430492.1| - 0.15 11.8 0.0 0.17 11.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF938) SNF PF00209.18 gi|530549937|ref|YP_008430493.1| - 1.5e-27 96.5 11.9 1.9e-27 96.2 11.9 1.0 1 0 0 1 1 1 1 Sodium:neurotransmitter symporter family Herpes_HEPA PF03324.14 gi|530549937|ref|YP_008430493.1| - 0.18 12.3 1.0 4.3 7.9 0.2 2.6 2 1 0 2 2 2 0 Herpesvirus DNA helicase/primase complex associated protein NKAIN PF05640.14 gi|530549938|ref|YP_008430494.1| - 0.036 13.3 0.1 0.036 13.3 0.1 1.0 1 0 0 1 1 1 0 Na,K-Atpase Interacting protein DUF4515 PF14988.6 gi|530549939|ref|YP_008430495.1| - 0.013 15.4 0.8 0.016 15.1 0.8 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4515) YozD PF14162.6 gi|530549939|ref|YP_008430495.1| - 0.015 15.6 0.0 0.044 14.1 0.0 1.8 1 0 0 1 1 1 0 YozD-like protein TINF2_N PF14973.6 gi|530549939|ref|YP_008430495.1| - 0.049 14.0 0.9 0.081 13.3 0.9 1.4 1 0 0 1 1 1 0 TERF1-interacting nuclear factor 2 N-terminus REC104 PF17378.2 gi|530549939|ref|YP_008430495.1| - 0.099 12.4 0.1 0.15 11.9 0.1 1.2 1 0 0 1 1 1 0 Meiotic recombination protein REC104 P-II PF00543.22 gi|530549940|ref|YP_008430496.1| - 6.2e-29 100.6 1.1 1.4e-28 99.4 1.1 1.5 1 1 0 1 1 1 1 Nitrogen regulatory protein P-II DUF2007 PF09413.10 gi|530549940|ref|YP_008430496.1| - 0.023 14.8 0.2 0.058 13.6 0.1 1.6 1 1 1 2 2 2 0 Putative prokaryotic signal transducing protein gp45-slide_C PF09116.10 gi|530549940|ref|YP_008430496.1| - 0.048 13.7 0.0 0.059 13.4 0.0 1.1 1 0 0 1 1 1 0 gp45 sliding clamp, C terminal ACT_7 PF13840.6 gi|530549940|ref|YP_008430496.1| - 0.26 11.1 2.2 10 6.0 0.4 2.2 2 0 0 2 2 2 0 ACT domain Glyco_hydro_57 PF03065.15 gi|530549941|ref|YP_008430497.1| - 3.5e-76 256.5 3.4 3.5e-76 256.5 3.4 2.3 2 1 0 2 2 2 1 Glycosyl hydrolase family 57 DUF1957 PF09210.11 gi|530549941|ref|YP_008430497.1| - 1.9e-30 105.2 1.0 1e-28 99.7 0.0 3.2 3 0 0 3 3 3 1 Domain of unknown function (DUF1957) HHH_5 PF14520.6 gi|530549941|ref|YP_008430497.1| - 3.7e-10 40.2 1.8 1e-09 38.9 1.8 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix domain DNA_pol_lambd_f PF10391.9 gi|530549941|ref|YP_008430497.1| - 4e-06 26.6 0.0 3.2e-05 23.7 0.0 2.4 3 0 0 3 3 3 1 Fingers domain of DNA polymerase lambda Cdd1 PF11731.8 gi|530549941|ref|YP_008430497.1| - 0.00076 19.7 0.1 0.0061 16.8 0.0 2.1 2 0 0 2 2 2 1 Pathogenicity locus Cpn60_TCP1 PF00118.24 gi|530549941|ref|YP_008430497.1| - 0.018 13.7 0.6 0.018 13.7 0.6 1.4 2 0 0 2 2 2 0 TCP-1/cpn60 chaperonin family DUF1285 PF06938.11 gi|530549941|ref|YP_008430497.1| - 0.023 14.8 0.1 0.023 14.8 0.1 1.8 2 0 0 2 2 1 0 Protein of unknown function (DUF1285) HHH PF00633.23 gi|530549941|ref|YP_008430497.1| - 0.048 13.5 0.3 0.16 11.9 0.3 2.0 2 0 0 2 2 2 0 Helix-hairpin-helix motif DUF4332 PF14229.6 gi|530549941|ref|YP_008430497.1| - 0.048 13.9 0.1 0.11 12.8 0.1 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4332) TfoX_C PF04994.13 gi|530549941|ref|YP_008430497.1| - 0.061 13.4 0.1 0.14 12.3 0.1 1.6 1 0 0 1 1 1 0 TfoX C-terminal domain IMS_HHH PF11798.8 gi|530549941|ref|YP_008430497.1| - 0.11 12.8 0.3 0.45 11.0 0.3 2.0 1 0 0 1 1 1 0 IMS family HHH motif RHH_3 PF12651.7 gi|530549941|ref|YP_008430497.1| - 0.72 9.9 3.9 23 5.1 0.0 3.5 3 0 0 3 3 3 0 Ribbon-helix-helix domain HHH_3 PF12836.7 gi|530549941|ref|YP_008430497.1| - 0.91 9.8 3.9 0.94 9.8 0.2 2.9 4 0 0 4 4 4 0 Helix-hairpin-helix motif FbpA PF05833.11 gi|530549942|ref|YP_008430498.1| - 7.5e-88 295.3 22.1 9.8e-88 294.9 22.1 1.1 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) NFACT-R_1 PF05670.13 gi|530549942|ref|YP_008430498.1| - 2e-28 99.2 0.0 4.8e-28 98.0 0.0 1.7 1 0 0 1 1 1 1 NFACT protein RNA binding domain H2TH PF06831.14 gi|530549942|ref|YP_008430498.1| - 0.00015 21.7 0.0 0.00049 20.0 0.0 1.9 1 0 0 1 1 1 1 Formamidopyrimidine-DNA glycosylase H2TH domain Ribosomal_S13 PF00416.22 gi|530549942|ref|YP_008430498.1| - 0.0027 18.1 0.0 0.0027 18.1 0.0 2.8 2 1 0 3 3 3 1 Ribosomal protein S13/S18 ABC_sub_bind PF04392.12 gi|530549942|ref|YP_008430498.1| - 0.045 13.0 0.8 0.14 11.3 0.5 1.9 2 0 0 2 2 2 0 ABC transporter substrate binding protein LMBR1 PF04791.16 gi|530549942|ref|YP_008430498.1| - 0.06 12.3 6.2 0.081 11.8 6.2 1.2 1 0 0 1 1 1 0 LMBR1-like membrane protein FliD_N PF02465.18 gi|530549942|ref|YP_008430498.1| - 0.14 12.9 0.6 19 6.0 0.0 2.9 2 0 0 2 2 2 0 Flagellar hook-associated protein 2 N-terminus NFACT-C PF11923.8 gi|530549942|ref|YP_008430498.1| - 0.4 10.6 0.1 0.4 10.6 0.1 3.1 3 1 0 3 3 3 0 NFACT protein C-terminal domain Radical_SAM PF04055.21 gi|530549944|ref|YP_008430500.1| - 2.3e-12 47.6 0.1 1.5e-11 44.9 0.0 2.0 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|530549944|ref|YP_008430500.1| - 4.3e-06 26.9 0.0 7.9e-06 26.0 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|530549944|ref|YP_008430500.1| - 8.5e-05 22.8 0.0 0.0003 21.1 0.0 1.8 2 0 0 2 2 2 1 4Fe-4S single cluster domain tRNA-synt_1 PF00133.22 gi|530549945|ref|YP_008430501.1| - 1e-193 644.9 8.0 1.4e-193 644.4 8.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|530549945|ref|YP_008430501.1| - 3.1e-38 131.1 0.7 8.3e-38 129.7 0.7 1.7 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 gi|530549945|ref|YP_008430501.1| - 1.2e-24 86.8 4.2 9.3e-09 34.5 0.0 4.0 3 1 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1e PF01406.19 gi|530549945|ref|YP_008430501.1| - 4.3e-08 32.8 0.1 4.4e-05 23.0 0.0 3.3 4 0 0 4 4 4 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.18 gi|530549945|ref|YP_008430501.1| - 6.6e-05 22.0 0.0 0.024 13.6 0.0 2.4 2 0 0 2 2 2 2 tRNA synthetases class I (K) tRNA-synt_1_2 PF13603.6 gi|530549945|ref|YP_008430501.1| - 0.00013 21.5 0.0 0.00034 20.2 0.0 1.7 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 DUF4720 PF15846.5 gi|530549945|ref|YP_008430501.1| - 0.0032 17.3 0.1 0.88 9.5 0.0 2.6 2 0 0 2 2 2 1 Domain of unknown function (DUF4720) zf-TFIIB PF13453.6 gi|530549945|ref|YP_008430501.1| - 0.025 13.9 1.9 6.5 6.2 0.0 3.5 3 0 0 3 3 3 0 Transcription factor zinc-finger DUF1153 PF06627.11 gi|530549945|ref|YP_008430501.1| - 0.042 14.0 0.1 0.17 12.0 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1153) zf-FPG_IleRS PF06827.14 gi|530549945|ref|YP_008430501.1| - 0.19 11.7 0.1 0.19 11.7 0.1 3.2 4 0 0 4 4 3 0 Zinc finger found in FPG and IleRS Methyltransf_13 PF08421.11 gi|530549945|ref|YP_008430501.1| - 0.49 10.7 1.8 31 4.9 0.4 3.1 2 1 1 3 3 3 0 Putative zinc binding domain Zn-ribbon_8 PF09723.10 gi|530549945|ref|YP_008430501.1| - 1 9.5 5.7 6.8 6.9 2.5 3.2 2 1 0 2 2 2 0 Zinc ribbon domain TF_Zn_Ribbon PF08271.12 gi|530549945|ref|YP_008430501.1| - 1.7 8.2 5.0 24 4.5 0.3 3.2 3 0 0 3 3 3 0 TFIIB zinc-binding zf-IS66 PF13005.7 gi|530549945|ref|YP_008430501.1| - 4.6 7.7 6.4 6.4 7.3 0.2 3.8 4 0 0 4 4 4 0 zinc-finger binding domain of transposase IS66 DUF3140 PF11338.8 gi|530549946|ref|YP_008430502.1| - 0.014 15.8 0.3 0.034 14.6 0.1 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3140) DUF401 PF04165.12 gi|530549947|ref|YP_008430503.1| - 1.5e-66 225.4 30.6 1.9e-66 225.0 30.6 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF401) DUF835 PF05763.12 gi|530549949|ref|YP_008430505.1| - 4.9e-32 110.5 0.3 7.3e-32 110.0 0.3 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF835) DUF116 PF01976.17 gi|530549950|ref|YP_008430506.1| - 2.2e-42 144.2 0.1 2.6e-42 144.0 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF116 HalOD2 PF18547.1 gi|530549950|ref|YP_008430506.1| - 0.046 13.6 1.8 0.088 12.7 1.8 1.4 1 0 0 1 1 1 0 Halobacterial output domain 2 EamA PF00892.20 gi|530549951|ref|YP_008430507.1| - 1.9e-37 128.5 35.5 1.9e-20 73.4 14.7 2.0 2 0 0 2 2 2 2 EamA-like transporter family TPT PF03151.16 gi|530549951|ref|YP_008430507.1| - 0.0001 21.8 11.2 0.00012 21.5 6.5 2.2 1 1 1 2 2 2 1 Triose-phosphate Transporter family Fer4_6 PF12837.7 gi|530549952|ref|YP_008430508.1| - 1.1e-12 47.4 33.9 4.9e-05 23.2 4.2 4.3 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_7 PF12838.7 gi|530549952|ref|YP_008430508.1| - 5.1e-12 46.2 21.6 4e-07 30.5 12.4 3.2 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|530549952|ref|YP_008430508.1| - 6.4e-12 45.4 49.6 3e-07 30.5 12.1 3.0 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_11 PF13247.6 gi|530549952|ref|YP_008430508.1| - 6.3e-11 42.3 13.0 6.3e-11 42.3 13.0 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|530549952|ref|YP_008430508.1| - 6.7e-11 41.6 35.9 5.3e-06 26.2 3.0 4.2 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_10 PF13237.6 gi|530549952|ref|YP_008430508.1| - 1.9e-08 34.3 30.2 5.5e-05 23.2 15.2 3.5 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|530549952|ref|YP_008430508.1| - 2.2e-08 34.1 28.0 0.0026 17.8 13.1 3.6 1 1 4 5 5 5 5 4Fe-4S dicluster domain Fer4 PF00037.27 gi|530549952|ref|YP_008430508.1| - 5.8e-08 32.2 15.4 2.3e-06 27.2 5.3 5.2 6 0 0 6 6 6 3 4Fe-4S binding domain Fer4_4 PF12800.7 gi|530549952|ref|YP_008430508.1| - 1.5e-06 28.3 32.4 0.0052 17.2 2.4 4.2 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_3 PF12798.7 gi|530549952|ref|YP_008430508.1| - 3e-05 24.6 42.1 0.035 15.0 4.2 4.3 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_8 PF13183.6 gi|530549952|ref|YP_008430508.1| - 7.7e-05 23.1 23.5 0.27 11.7 6.4 3.7 2 2 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|530549952|ref|YP_008430508.1| - 0.0023 18.8 29.3 0.062 14.2 1.5 4.3 3 1 0 4 4 4 2 4Fe-4S double cluster binding domain Fer4_17 PF13534.6 gi|530549952|ref|YP_008430508.1| - 0.017 15.7 25.0 0.28 11.7 0.6 4.1 3 1 0 3 3 3 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|530549952|ref|YP_008430508.1| - 0.086 13.4 4.7 0.086 13.4 4.7 4.1 4 0 0 4 4 3 0 4Fe-4S single cluster domain of Ferredoxin I Glycoprotein_G PF00802.19 gi|530549952|ref|YP_008430508.1| - 0.09 12.1 0.2 0.15 11.4 0.2 1.3 1 0 0 1 1 1 0 Pneumovirus attachment glycoprotein G Fer4_15 PF13459.6 gi|530549952|ref|YP_008430508.1| - 3.7 8.4 22.1 0.14 12.9 2.9 4.2 3 1 1 4 4 4 0 4Fe-4S single cluster domain AFOR_C PF01314.18 gi|530549953|ref|YP_008430509.1| - 1.2e-80 271.4 0.0 1.8e-80 270.8 0.0 1.2 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.15 gi|530549953|ref|YP_008430509.1| - 1.5e-62 211.0 0.4 2.1e-62 210.5 0.4 1.2 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain OsmC PF02566.19 gi|530549954|ref|YP_008430510.1| - 2.8e-26 91.9 0.1 5e-26 91.1 0.0 1.4 2 0 0 2 2 2 1 OsmC-like protein Cupredoxin_1 PF13473.6 gi|530549954|ref|YP_008430510.1| - 0.088 12.9 0.1 0.24 11.5 0.0 1.9 1 1 0 1 1 1 0 Cupredoxin-like domain DUF2277 PF10041.9 gi|530549955|ref|YP_008430511.1| - 0.092 13.1 0.0 0.12 12.7 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2277) CW_binding_1 PF01473.20 gi|530549955|ref|YP_008430511.1| - 0.24 11.8 5.8 0.5 10.8 5.8 1.6 1 0 0 1 1 1 0 Putative cell wall binding repeat ThiS PF02597.20 gi|530549956|ref|YP_008430512.1| - 5e-12 46.3 0.1 5.5e-12 46.1 0.1 1.0 1 0 0 1 1 1 1 ThiS family TGS PF02824.21 gi|530549956|ref|YP_008430512.1| - 0.0054 16.8 0.1 0.027 14.5 0.1 1.9 1 1 0 1 1 1 1 TGS domain Ub-Mut7C PF14451.6 gi|530549956|ref|YP_008430512.1| - 0.013 15.4 0.1 0.019 14.8 0.1 1.4 1 1 0 1 1 1 0 Mut7-C ubiquitin FHA PF00498.26 gi|530549956|ref|YP_008430512.1| - 0.032 14.6 0.1 0.059 13.7 0.1 1.5 1 1 0 1 1 1 0 FHA domain QRPTase_N PF02749.16 gi|530549956|ref|YP_008430512.1| - 0.053 13.6 0.1 0.071 13.2 0.1 1.2 1 0 0 1 1 1 0 Quinolinate phosphoribosyl transferase, N-terminal domain ThiS-like PF14453.6 gi|530549956|ref|YP_008430512.1| - 0.12 12.4 0.0 0.19 11.8 0.0 1.4 1 0 0 1 1 1 0 ThiS-like ubiquitin Phage_H_T_join PF05521.11 gi|530549957|ref|YP_008430513.1| - 0.088 13.3 0.1 0.12 13.0 0.1 1.2 1 0 0 1 1 1 0 Phage head-tail joining protein Glyco_hydro_57 PF03065.15 gi|530549958|ref|YP_008430514.1| - 2.1e-07 30.4 0.2 2.1e-07 30.4 0.2 1.8 2 0 0 2 2 2 1 Glycosyl hydrolase family 57 tRNA_NucTransf2 PF09249.11 gi|530549959|ref|YP_008430515.1| - 6.4e-39 132.7 0.0 1.2e-38 131.8 0.0 1.5 1 0 0 1 1 1 1 tRNA nucleotidyltransferase, second domain NTP_transf_2 PF01909.23 gi|530549959|ref|YP_008430515.1| - 1.3e-11 44.6 0.1 4.8e-11 42.8 0.1 2.0 1 0 0 1 1 1 1 Nucleotidyltransferase domain SMODS PF18144.1 gi|530549959|ref|YP_008430515.1| - 0.0025 18.0 0.0 0.0074 16.5 0.0 1.7 1 1 0 1 1 1 1 Second Messenger Oligonucleotide or Dinucleotide Synthetase domain LigT_PEase PF02834.16 gi|530549960|ref|YP_008430516.1| - 1.3e-34 118.2 0.3 1.1e-20 73.6 0.1 2.1 2 0 0 2 2 2 2 LigT like Phosphoesterase AKAP7_NLS PF10469.9 gi|530549960|ref|YP_008430516.1| - 5.7e-16 59.0 3.0 7e-16 58.7 3.0 1.1 1 0 0 1 1 1 1 AKAP7 2'5' RNA ligase-like domain 2_5_RNA_ligase2 PF13563.6 gi|530549960|ref|YP_008430516.1| - 6.5e-14 52.1 0.0 8.6e-14 51.7 0.0 1.1 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily HVSL PF09749.9 gi|530549960|ref|YP_008430516.1| - 0.0019 17.7 0.3 0.0022 17.5 0.3 1.1 1 0 0 1 1 1 1 Uncharacterised conserved protein DUF2680 PF10925.8 gi|530549960|ref|YP_008430516.1| - 0.0025 17.8 1.4 0.0061 16.5 0.2 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF2680) RBFA PF02033.18 gi|530549960|ref|YP_008430516.1| - 0.0026 18.2 1.3 0.0081 16.6 0.5 2.2 1 1 1 2 2 2 2 Ribosome-binding factor A DUF4600 PF15372.6 gi|530549960|ref|YP_008430516.1| - 0.022 15.2 1.5 0.046 14.2 1.5 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4600) PYRIN PF02758.16 gi|530549960|ref|YP_008430516.1| - 0.32 11.2 3.4 5 7.4 0.4 2.6 2 0 0 2 2 2 0 PAAD/DAPIN/Pyrin domain MnmE_helical PF12631.7 gi|530549960|ref|YP_008430516.1| - 0.55 10.4 3.6 0.75 9.9 1.1 1.9 1 1 0 1 1 1 0 MnmE helical domain CFAP91 PF14738.6 gi|530549960|ref|YP_008430516.1| - 1 9.4 6.8 0.3 11.1 3.7 1.6 2 0 0 2 2 2 0 Cilia- and flagella-associated protein 91 # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Thermococcus_litoralis_DSM_5473_uid82997/NC_022084.faa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Thermococcus_litoralis_DSM_5473_uid82997/NC_022084.PFam32-A --tblout /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Thermococcus_litoralis_DSM_5473_uid82997/NC_022084.PFam32-A.tblout --cpu 20 /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Thermococcus_litoralis_DSM_5473_uid82997/NC_022084.faa # Current dir: /oak/stanford/groups/akundaje/marinovg/genomes # Date: Mon Mar 25 16:14:44 2019 # [ok]