# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- DUF3368 PF11848.3 gi|57642241|ref|YP_182413.1| - 5.1e-11 41.9 2.0 9.5e-11 41.0 0.1 2.3 3 0 0 3 3 3 1 Domain of unknown function (DUF3368) PPR PF01535.15 gi|57642241|ref|YP_182413.1| - 0.06 13.3 0.0 0.26 11.3 0.0 2.1 2 0 0 2 2 2 0 PPR repeat FeoA PF04023.9 gi|57642241|ref|YP_182413.1| - 0.13 12.2 0.3 7.5 6.6 0.1 2.6 2 1 0 2 2 2 0 FeoA domain DNA_pol_B PF00136.16 gi|57639936|ref|YP_182414.1| - 6.3e-99 331.8 3.1 3.3e-67 227.2 1.4 3.5 3 0 0 3 3 3 3 DNA polymerase family B DNA_pol_B_exo1 PF03104.14 gi|57639936|ref|YP_182414.1| - 8.4e-51 172.7 3.1 4.2e-35 121.1 0.0 2.9 2 1 1 3 3 3 2 DNA polymerase family B, exonuclease domain LAGLIDADG_3 PF14528.1 gi|57639936|ref|YP_182414.1| - 1.3e-25 89.4 8.4 6e-08 32.8 0.1 5.6 4 0 0 4 4 4 4 LAGLIDADG-like domain Intein_splicing PF14890.1 gi|57639936|ref|YP_182414.1| - 8e-17 61.1 0.0 2.2e-09 36.6 0.0 5.0 2 1 1 3 3 3 2 Intein splicing domain RNase_H_2 PF13482.1 gi|57639936|ref|YP_182414.1| - 1.8e-09 37.5 0.1 6.1e-09 35.8 0.1 1.9 1 0 0 1 1 1 1 RNase_H superfamily DNA_pol_B_exo2 PF10108.4 gi|57639936|ref|YP_182414.1| - 9.7e-09 35.0 0.0 1.9e-08 34.0 0.0 1.4 1 0 0 1 1 1 1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB LAGLIDADG_WhiA PF14527.1 gi|57639936|ref|YP_182414.1| - 0.00017 21.3 2.8 1.6 8.6 0.0 5.1 4 0 0 4 4 4 1 WhiA LAGLIDADG-like domain Hom_end_hint PF05203.11 gi|57639936|ref|YP_182414.1| - 0.00026 20.8 0.2 0.0015 18.3 0.1 2.2 1 1 0 1 1 1 1 Hom_end-associated Hint Vint PF14623.1 gi|57639936|ref|YP_182414.1| - 0.0005 19.5 0.1 0.0013 18.2 0.0 1.7 1 0 0 1 1 1 1 Hint-domain Hint PF01079.15 gi|57639936|ref|YP_182414.1| - 0.003 16.7 0.0 0.84 8.7 0.0 2.4 2 0 0 2 2 2 2 Hint module DUF2012 PF09430.5 gi|57639936|ref|YP_182414.1| - 0.082 12.7 0.1 0.86 9.4 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2012) LamB_YcsF PF03746.11 gi|57639936|ref|YP_182414.1| - 0.33 10.0 0.0 0.62 9.1 0.0 1.4 1 0 0 1 1 1 0 LamB/YcsF family DUF45 PF01863.12 gi|57639937|ref|YP_182415.1| - 1.6e-51 175.0 0.0 2.2e-51 174.5 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF45 WLM PF08325.5 gi|57639937|ref|YP_182415.1| - 1.4e-05 25.0 0.1 2.2e-05 24.4 0.1 1.2 1 0 0 1 1 1 1 WLM domain SprT-like PF10263.4 gi|57639937|ref|YP_182415.1| - 0.064 12.9 0.0 0.096 12.3 0.0 1.2 1 0 0 1 1 1 0 SprT-like family DUF4414 PF14377.1 gi|57639937|ref|YP_182415.1| - 0.11 12.4 0.2 4.2 7.3 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4414) Peptidase_M56 PF05569.6 gi|57639937|ref|YP_182415.1| - 0.14 11.0 0.2 0.2 10.5 0.1 1.1 1 0 0 1 1 1 0 BlaR1 peptidase M56 NfeD PF01957.13 gi|57639938|ref|YP_182416.1| - 8.3e-12 45.4 0.3 9.8e-12 45.2 0.2 1.1 1 0 0 1 1 1 1 NfeD-like C-terminal, partner-binding bPH_5 PF10882.3 gi|57639939|ref|YP_182417.1| - 0.014 15.2 0.1 0.041 13.6 0.0 1.7 1 1 1 2 2 2 0 Bacterial PH domain DUF4564 PF15169.1 gi|57639939|ref|YP_182417.1| - 0.019 14.7 0.4 0.025 14.2 0.2 1.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4564) CoA_binding_2 PF13380.1 gi|57639940|ref|YP_182418.1| - 1.5e-39 134.7 0.0 1.8e-39 134.4 0.0 1.1 1 0 0 1 1 1 1 CoA binding domain CoA_binding PF02629.14 gi|57639940|ref|YP_182418.1| - 1.2e-09 38.5 0.0 1.7e-09 38.0 0.0 1.3 1 0 0 1 1 1 1 CoA binding domain LisH PF08513.6 gi|57639940|ref|YP_182418.1| - 0.17 11.7 0.3 0.32 10.8 0.2 1.5 1 0 0 1 1 1 0 LisH PIN_2 PF10130.4 gi|57639941|ref|YP_182419.1| - 7.9e-09 35.6 0.0 8.6e-09 35.5 0.0 1.0 1 0 0 1 1 1 1 PIN domain RHH_1 PF01402.16 gi|57639942|ref|YP_182420.1| - 0.44 10.5 2.2 27 4.8 0.3 2.7 1 1 2 3 3 3 0 Ribbon-helix-helix protein, copG family UPF0020 PF01170.13 gi|57639943|ref|YP_182421.1| - 3.5e-16 59.2 0.0 2.8e-15 56.3 0.0 2.3 2 1 0 2 2 2 1 Putative RNA methylase family UPF0020 Methyltransf_26 PF13659.1 gi|57639943|ref|YP_182421.1| - 1.8e-10 40.8 0.0 2.6e-10 40.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain N6_N4_Mtase PF01555.13 gi|57639943|ref|YP_182421.1| - 3.2e-07 30.0 0.0 0.00023 20.7 0.0 2.9 2 1 0 2 2 2 1 DNA methylase Methyltransf_31 PF13847.1 gi|57639943|ref|YP_182421.1| - 9.3e-06 25.2 0.0 1.5e-05 24.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|57639943|ref|YP_182421.1| - 0.012 16.1 0.0 0.095 13.2 0.0 2.2 2 0 0 2 2 2 0 Methyltransferase domain Methyltransf_5 PF01795.14 gi|57639943|ref|YP_182421.1| - 0.018 14.3 0.0 0.036 13.3 0.0 1.5 2 0 0 2 2 2 0 MraW methylase family Methyltransf_15 PF09445.5 gi|57639943|ref|YP_182421.1| - 0.019 14.4 0.0 0.029 13.9 0.0 1.4 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Methyltransf_25 PF13649.1 gi|57639943|ref|YP_182421.1| - 0.024 15.0 0.0 0.047 14.0 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_23 PF13489.1 gi|57639943|ref|YP_182421.1| - 0.04 13.6 0.0 0.19 11.4 0.0 2.1 2 1 0 2 2 2 0 Methyltransferase domain N6_Mtase PF02384.11 gi|57639943|ref|YP_182421.1| - 0.064 12.3 0.0 0.1 11.6 0.0 1.2 1 0 0 1 1 1 0 N-6 DNA Methylase AdoMet_MTase PF07757.8 gi|57639943|ref|YP_182421.1| - 0.12 12.5 0.1 19 5.4 0.0 2.4 2 0 0 2 2 2 0 Predicted AdoMet-dependent methyltransferase Apc3 PF12895.2 gi|57639944|ref|YP_182422.1| - 1e-06 28.7 0.0 0.066 13.3 0.0 3.7 3 0 0 3 3 3 2 Anaphase-promoting complex, cyclosome, subunit 3 TPR_19 PF14559.1 gi|57639944|ref|YP_182422.1| - 1.1e-05 25.6 3.2 1.4 9.2 0.1 5.3 5 0 0 5 5 5 1 Tetratricopeptide repeat TPR_14 PF13428.1 gi|57639944|ref|YP_182422.1| - 2.2e-05 24.6 10.6 2.2 9.1 0.0 6.3 6 0 0 6 6 6 1 Tetratricopeptide repeat TPR_2 PF07719.12 gi|57639944|ref|YP_182422.1| - 0.0011 18.6 3.2 1.6 8.8 0.0 5.2 6 0 0 6 6 5 1 Tetratricopeptide repeat TPR_4 PF07721.9 gi|57639944|ref|YP_182422.1| - 0.0021 18.3 1.7 26 5.6 0.0 5.8 6 0 0 6 6 6 0 Tetratricopeptide repeat TPR_21 PF09976.4 gi|57639944|ref|YP_182422.1| - 0.004 17.1 3.7 0.43 10.5 0.3 2.6 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_1 PF00515.23 gi|57639944|ref|YP_182422.1| - 0.005 16.3 2.4 2.5 7.8 0.0 4.7 5 0 0 5 5 5 1 Tetratricopeptide repeat TPR_20 PF14561.1 gi|57639944|ref|YP_182422.1| - 0.0059 16.6 3.6 4.1 7.5 0.0 3.9 5 0 0 5 5 5 2 Tetratricopeptide repeat Foie-gras_1 PF11817.3 gi|57639944|ref|YP_182422.1| - 0.0062 16.0 0.0 3.6 6.9 0.0 3.2 3 1 0 3 3 3 1 Foie gras liver health family 1 TPR_6 PF13174.1 gi|57639944|ref|YP_182422.1| - 0.012 16.0 1.1 17 6.1 0.0 4.6 4 0 0 4 4 4 0 Tetratricopeptide repeat TPR_16 PF13432.1 gi|57639944|ref|YP_182422.1| - 0.047 14.3 13.8 1.9 9.2 0.2 5.1 6 0 0 6 6 6 0 Tetratricopeptide repeat YrbL-PhoP_reg PF10707.4 gi|57639944|ref|YP_182422.1| - 0.055 12.8 0.0 0.082 12.2 0.0 1.2 1 0 0 1 1 1 0 PhoP regulatory network protein YrbL IDEAL PF08858.5 gi|57639944|ref|YP_182422.1| - 0.1 12.0 0.4 0.37 10.3 0.3 1.9 1 0 0 1 1 1 0 IDEAL domain TPR_7 PF13176.1 gi|57639944|ref|YP_182422.1| - 0.19 11.5 2.1 62 3.7 0.0 4.6 6 0 0 6 6 6 0 Tetratricopeptide repeat UPF0047 PF01894.12 gi|57639946|ref|YP_182424.1| - 3.7e-38 129.9 0.1 4.2e-38 129.7 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 MMR_HSR1 PF01926.18 gi|57639947|ref|YP_182425.1| - 3.9e-23 81.5 0.1 5.4e-23 81.1 0.0 1.2 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|57639947|ref|YP_182425.1| - 2.3e-14 52.9 0.1 3.5e-14 52.3 0.1 1.3 1 1 0 1 1 1 1 Ferrous iron transport protein B GTP_EFTU PF00009.22 gi|57639947|ref|YP_182425.1| - 4.5e-10 39.2 0.3 9.2e-07 28.4 0.0 2.2 2 0 0 2 2 2 2 Elongation factor Tu GTP binding domain Dynamin_N PF00350.18 gi|57639947|ref|YP_182425.1| - 2.8e-09 37.0 0.7 0.00092 19.0 0.1 2.4 2 1 1 3 3 2 2 Dynamin family Miro PF08477.8 gi|57639947|ref|YP_182425.1| - 5.7e-08 33.2 0.0 1e-07 32.4 0.0 1.4 1 0 0 1 1 1 1 Miro-like protein PduV-EutP PF10662.4 gi|57639947|ref|YP_182425.1| - 9.2e-07 28.4 0.3 0.00061 19.2 0.0 2.2 2 0 0 2 2 2 2 Ethanolamine utilisation - propanediol utilisation cobW PF02492.14 gi|57639947|ref|YP_182425.1| - 2.1e-05 24.0 0.6 0.00015 21.2 0.0 1.9 1 1 1 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain Arf PF00025.16 gi|57639947|ref|YP_182425.1| - 3.1e-05 23.3 0.8 0.015 14.5 0.1 2.1 2 0 0 2 2 2 2 ADP-ribosylation factor family CbiA PF01656.18 gi|57639947|ref|YP_182425.1| - 0.0004 19.8 0.2 0.0011 18.4 0.0 1.7 2 0 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain GBP PF02263.14 gi|57639947|ref|YP_182425.1| - 0.00098 18.2 0.0 0.0022 17.1 0.0 1.6 1 0 0 1 1 1 1 Guanylate-binding protein, N-terminal domain Septin PF00735.13 gi|57639947|ref|YP_182425.1| - 0.0011 18.0 2.1 0.083 11.8 0.0 2.2 1 1 1 2 2 2 2 Septin Ras PF00071.17 gi|57639947|ref|YP_182425.1| - 0.0015 17.9 0.2 0.023 14.0 0.1 2.2 1 1 0 1 1 1 1 Ras family AAA_17 PF13207.1 gi|57639947|ref|YP_182425.1| - 0.0052 17.5 0.7 0.019 15.7 0.5 1.8 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|57639947|ref|YP_182425.1| - 0.0066 15.6 0.3 0.022 13.9 0.2 2.0 1 1 0 1 1 1 1 Protein of unknown function, DUF258 MobB PF03205.9 gi|57639947|ref|YP_182425.1| - 0.0098 15.6 0.7 0.073 12.7 0.1 2.4 2 1 1 3 3 3 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_28 PF13521.1 gi|57639947|ref|YP_182425.1| - 0.01 15.8 0.3 0.019 14.9 0.0 1.7 2 1 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|57639947|ref|YP_182425.1| - 0.021 14.9 0.4 0.25 11.4 0.3 2.1 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|57639947|ref|YP_182425.1| - 0.026 14.0 0.1 0.047 13.2 0.0 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain ATP_bind_1 PF03029.12 gi|57639947|ref|YP_182425.1| - 0.033 13.7 0.2 0.91 9.0 0.0 2.5 2 1 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA_14 PF13173.1 gi|57639947|ref|YP_182425.1| - 0.049 13.5 0.1 0.09 12.6 0.1 1.9 1 1 0 1 1 1 0 AAA domain AIG1 PF04548.11 gi|57639947|ref|YP_182425.1| - 0.05 12.7 0.2 0.095 11.7 0.1 1.6 1 1 0 1 1 1 0 AIG1 family AAA_15 PF13175.1 gi|57639947|ref|YP_182425.1| - 0.055 12.5 0.1 0.062 12.3 0.1 1.1 1 0 0 1 1 1 0 AAA ATPase domain ABC_tran PF00005.22 gi|57639947|ref|YP_182425.1| - 0.085 13.1 1.3 0.11 12.7 0.9 1.6 1 1 0 1 1 1 0 ABC transporter PB1 PF00564.19 gi|57639947|ref|YP_182425.1| - 0.085 12.5 0.3 0.17 11.5 0.0 1.7 2 0 0 2 2 1 0 PB1 domain NOG1 PF06858.9 gi|57639947|ref|YP_182425.1| - 0.13 12.1 1.0 0.36 10.7 0.2 2.1 2 1 0 2 2 2 0 Nucleolar GTP-binding protein 1 (NOG1) HD_3 PF13023.1 gi|57639949|ref|YP_182427.1| - 1.9e-34 118.7 0.0 2.2e-34 118.5 0.0 1.1 1 0 0 1 1 1 1 HD domain HD PF01966.17 gi|57639949|ref|YP_182427.1| - 1e-11 44.9 0.1 2.7e-11 43.5 0.1 1.7 1 1 0 1 1 1 1 HD domain HD_2 PF12917.2 gi|57639949|ref|YP_182427.1| - 7.8e-08 32.3 0.0 9.9e-08 32.0 0.0 1.1 1 0 0 1 1 1 1 HD containing hydrolase-like enzyme HDOD PF08668.7 gi|57639949|ref|YP_182427.1| - 4.9e-05 22.6 0.0 7.7e-05 22.0 0.0 1.2 1 0 0 1 1 1 1 HDOD domain SBP_bac_11 PF13531.1 gi|57639950|ref|YP_182428.1| - 4.9e-34 117.9 0.0 6.3e-34 117.6 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|57639950|ref|YP_182428.1| - 2.2e-14 53.9 0.4 4.9e-14 52.7 0.3 1.5 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.1 gi|57639950|ref|YP_182428.1| - 0.0011 18.3 0.0 0.0039 16.5 0.0 1.8 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.1 gi|57639950|ref|YP_182428.1| - 0.0018 18.1 0.2 0.014 15.1 0.0 2.1 1 1 0 2 2 2 1 Bacterial extracellular solute-binding protein PIN PF01850.16 gi|57639951|ref|YP_182429.1| - 3e-24 85.6 0.6 4.7e-24 85.0 0.4 1.3 1 1 0 1 1 1 1 PIN domain DUF2540 PF10802.3 gi|57639951|ref|YP_182429.1| - 0.077 12.6 0.6 0.13 11.9 0.4 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2540) MraZ PF02381.13 gi|57639952|ref|YP_182430.1| - 1.1e-05 25.0 1.0 5e-05 22.9 0.7 1.9 1 1 0 1 1 1 1 MraZ protein Antitoxin-MazE PF04014.13 gi|57639952|ref|YP_182430.1| - 0.00022 20.8 1.9 0.00025 20.6 0.5 1.8 1 1 1 2 2 2 1 Antidote-toxin recognition MazE BPD_transp_1 PF00528.17 gi|57639953|ref|YP_182431.1| - 5e-21 75.0 11.3 5e-21 75.0 7.8 1.9 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component AAA_21 PF13304.1 gi|57639954|ref|YP_182432.1| - 2.1e-21 77.1 7.0 1.7e-20 74.2 4.9 2.0 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|57639954|ref|YP_182432.1| - 5.6e-15 55.3 5.7 2.7e-09 36.5 1.1 2.3 1 1 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.1 gi|57639954|ref|YP_182432.1| - 1.1e-08 35.6 2.0 1.1e-08 35.6 1.4 1.7 2 1 0 2 2 2 1 AAA domain DUF2813 PF11398.3 gi|57639954|ref|YP_182432.1| - 4.1e-08 32.7 1.2 1.3e-07 31.0 0.5 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF2813) SMC_N PF02463.14 gi|57639954|ref|YP_182432.1| - 3.1e-06 26.6 0.2 8.2e-06 25.2 0.1 1.8 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|57639954|ref|YP_182432.1| - 0.00058 19.3 0.1 0.0014 18.1 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_13 PF13166.1 gi|57639954|ref|YP_182432.1| - 0.016 13.7 0.4 0.68 8.3 0.1 2.2 2 0 0 2 2 2 0 AAA domain ABC_tran PF00005.22 gi|57639954|ref|YP_182432.1| - 0.031 14.5 0.0 0.06 13.6 0.0 1.5 1 0 0 1 1 1 0 ABC transporter MMR_HSR1 PF01926.18 gi|57639954|ref|YP_182432.1| - 0.05 13.5 0.3 0.15 12.0 0.1 1.8 2 0 0 2 2 2 0 50S ribosome-binding GTPase MobB PF03205.9 gi|57639954|ref|YP_182432.1| - 0.086 12.5 0.1 14 5.4 0.0 2.4 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B DUF3226 PF11536.3 gi|57639955|ref|YP_182433.1| - 7e-112 372.6 0.8 7.9e-112 372.5 0.5 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3226) ABC_tran PF00005.22 gi|57639956|ref|YP_182434.1| - 2.1e-34 118.7 0.0 5.8e-34 117.3 0.0 1.7 3 0 0 3 3 1 1 ABC transporter AAA_21 PF13304.1 gi|57639956|ref|YP_182434.1| - 4.2e-06 26.9 0.1 0.0054 16.7 0.1 2.2 1 1 0 1 1 1 1 AAA domain SbcCD_C PF13558.1 gi|57639956|ref|YP_182434.1| - 7.1e-05 22.6 0.1 0.0011 18.8 0.0 2.4 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit SMC_N PF02463.14 gi|57639956|ref|YP_182434.1| - 0.00015 21.0 0.0 0.064 12.4 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|57639956|ref|YP_182434.1| - 0.00042 20.3 0.0 0.00076 19.5 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_25 PF13481.1 gi|57639956|ref|YP_182434.1| - 0.0018 17.7 0.0 0.35 10.2 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|57639956|ref|YP_182434.1| - 0.0019 17.7 0.0 0.0033 16.9 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|57639956|ref|YP_182434.1| - 0.0036 17.6 0.0 0.0055 17.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|57639956|ref|YP_182434.1| - 0.0053 16.4 0.0 0.025 14.3 0.0 2.0 2 0 0 2 2 2 1 Part of AAA domain AAA_10 PF12846.2 gi|57639956|ref|YP_182434.1| - 0.0079 15.6 0.0 0.093 12.1 0.0 2.0 2 0 0 2 2 2 1 AAA-like domain T2SE PF00437.15 gi|57639956|ref|YP_182434.1| - 0.01 14.7 0.0 0.016 14.0 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein ATP-synt_ab PF00006.20 gi|57639956|ref|YP_182434.1| - 0.013 14.9 0.0 0.017 14.6 0.0 1.2 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_15 PF13175.1 gi|57639956|ref|YP_182434.1| - 0.017 14.2 0.0 1.8 7.5 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain AAA_22 PF13401.1 gi|57639956|ref|YP_182434.1| - 0.025 14.7 0.1 0.16 12.0 0.0 1.9 2 0 0 2 2 2 0 AAA domain TOBE_2 PF08402.5 gi|57639956|ref|YP_182434.1| - 0.027 14.4 0.1 0.45 10.5 0.0 2.3 2 0 0 2 2 2 0 TOBE domain DUF258 PF03193.11 gi|57639956|ref|YP_182434.1| - 0.041 13.0 0.0 0.1 11.8 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function, DUF258 Mg_chelatase PF01078.16 gi|57639956|ref|YP_182434.1| - 0.043 12.9 0.0 0.069 12.3 0.0 1.2 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI IstB_IS21 PF01695.12 gi|57639956|ref|YP_182434.1| - 0.048 13.0 0.0 0.084 12.2 0.0 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_5 PF07728.9 gi|57639956|ref|YP_182434.1| - 0.066 12.9 0.0 0.32 10.7 0.0 2.1 3 0 0 3 3 2 0 AAA domain (dynein-related subfamily) FtsK_SpoIIIE PF01580.13 gi|57639956|ref|YP_182434.1| - 0.075 12.5 0.0 0.14 11.5 0.0 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family DUF815 PF05673.8 gi|57639956|ref|YP_182434.1| - 0.095 11.6 0.0 1.7 7.5 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF815) AAA_30 PF13604.1 gi|57639956|ref|YP_182434.1| - 0.098 12.2 0.0 0.18 11.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain Arch_ATPase PF01637.13 gi|57639956|ref|YP_182434.1| - 0.13 11.9 0.0 0.22 11.1 0.0 1.3 1 0 0 1 1 1 0 Archaeal ATPase Band_7_1 PF13421.1 gi|57639957|ref|YP_182435.1| - 4.5e-38 130.8 0.1 6.7e-38 130.3 0.1 1.2 1 0 0 1 1 1 1 SPFH domain-Band 7 family Band_7 PF01145.20 gi|57639957|ref|YP_182435.1| - 3.4e-20 72.6 0.1 3.4e-20 72.6 0.0 1.4 2 0 0 2 2 1 1 SPFH domain / Band 7 family zf-ribbon_3 PF13248.1 gi|57639957|ref|YP_182435.1| - 2.1e-13 49.0 13.5 1.7e-09 36.5 2.6 2.6 2 1 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|57639957|ref|YP_182435.1| - 6.6e-13 47.6 15.7 2.4e-09 36.3 3.9 2.6 3 0 0 3 3 2 2 zinc-ribbon domain DZR PF12773.2 gi|57639957|ref|YP_182435.1| - 4.9e-10 39.0 7.9 2e-06 27.5 1.5 2.0 1 1 0 2 2 2 2 Double zinc ribbon UPF0547 PF10571.4 gi|57639957|ref|YP_182435.1| - 2.6e-06 27.0 17.9 0.00057 19.5 4.4 2.5 2 0 0 2 2 2 2 Uncharacterised protein family UPF0547 zf-NADH-PPase PF09297.6 gi|57639957|ref|YP_182435.1| - 0.0017 17.7 10.9 0.14 11.7 0.4 3.7 4 0 0 4 4 4 2 NADH pyrophosphatase zinc ribbon domain zf-DHHC PF01529.15 gi|57639957|ref|YP_182435.1| - 0.087 12.2 4.3 0.052 12.9 1.3 1.6 1 1 1 2 2 2 0 DHHC palmitoyltransferase Nudix_N_2 PF14803.1 gi|57639957|ref|YP_182435.1| - 0.15 11.7 10.4 2.1 8.1 0.1 3.3 3 0 0 3 3 3 0 Nudix N-terminal DNA_ligase_ZBD PF03119.11 gi|57639957|ref|YP_182435.1| - 0.3 10.8 15.2 1.1 9.0 0.1 4.1 4 1 0 4 4 4 0 NAD-dependent DNA ligase C4 zinc finger domain DUF2116 PF09889.4 gi|57639957|ref|YP_182435.1| - 0.75 9.6 7.3 3.5 7.4 2.3 2.4 2 0 0 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) Rad50_zn_hook PF04423.9 gi|57639957|ref|YP_182435.1| - 1.7 8.1 7.5 15 5.1 0.1 3.0 2 1 1 3 3 3 0 Rad50 zinc hook motif zf-C3HC4_3 PF13920.1 gi|57639957|ref|YP_182435.1| - 3.4 7.4 7.3 9.8 5.9 1.8 2.5 1 1 1 2 2 2 0 Zinc finger, C3HC4 type (RING finger) zf-CHCC PF10276.4 gi|57639957|ref|YP_182435.1| - 3.7 7.4 8.3 3.2 7.6 0.2 2.7 3 0 0 3 3 3 0 Zinc-finger domain Cys_rich_CPXG PF14255.1 gi|57639957|ref|YP_182435.1| - 3.7 7.4 12.0 1.7 8.5 0.5 3.3 3 0 0 3 3 3 0 Cysteine-rich CPXCG Cript PF10235.4 gi|57639957|ref|YP_182435.1| - 4.7 7.6 6.4 38 4.7 4.5 2.3 1 1 0 1 1 1 0 Microtubule-associated protein CRIPT Auto_anti-p27 PF06677.7 gi|57639957|ref|YP_182435.1| - 5 6.9 10.5 5.3 6.8 2.9 2.6 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DUF2256 PF10013.4 gi|57639957|ref|YP_182435.1| - 7.1 6.4 6.0 29 4.5 0.1 3.1 3 0 0 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2256) Cytokin-bind PF09265.5 gi|57639958|ref|YP_182436.1| - 0.0046 16.1 0.1 0.0053 15.9 0.0 1.1 1 0 0 1 1 1 1 Cytokinin dehydrogenase 1, FAD and cytokinin binding zinc_ribbon_5 PF13719.1 gi|57639959|ref|YP_182437.1| - 4.7e-06 26.0 1.4 1.9e-05 24.1 1.0 1.9 1 1 1 2 2 2 2 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|57639959|ref|YP_182437.1| - 1.1e-05 24.9 1.1 6.6e-05 22.5 0.9 2.0 1 1 1 2 2 2 2 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|57639959|ref|YP_182437.1| - 0.00031 19.8 4.2 0.00088 18.4 2.9 1.8 1 1 1 2 2 2 2 zinc-ribbon domain Prok-RING_1 PF14446.1 gi|57639959|ref|YP_182437.1| - 0.0085 15.8 0.8 0.014 15.1 0.6 1.3 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 zf-C2H2_6 PF13912.1 gi|57639959|ref|YP_182437.1| - 0.013 15.4 0.4 4 7.4 0.0 2.3 2 0 0 2 2 2 0 C2H2-type zinc finger zf-IS66 PF13005.2 gi|57639959|ref|YP_182437.1| - 0.014 15.3 0.2 0.92 9.5 0.0 3.1 3 0 0 3 3 3 0 zinc-finger binding domain of transposase IS66 zf-H2C2_2 PF13465.1 gi|57639959|ref|YP_182437.1| - 0.015 15.5 3.1 2.5 8.5 0.2 2.5 2 0 0 2 2 2 0 Zinc-finger double domain zf-C2H2_4 PF13894.1 gi|57639959|ref|YP_182437.1| - 0.03 14.6 2.1 4.6 7.8 0.2 2.5 2 0 0 2 2 2 0 C2H2-type zinc finger zf-C2H2 PF00096.21 gi|57639959|ref|YP_182437.1| - 0.041 14.2 1.4 6.8 7.2 0.2 2.5 2 0 0 2 2 2 0 Zinc finger, C2H2 type HypA PF01155.14 gi|57639959|ref|YP_182437.1| - 0.043 13.5 0.4 0.078 12.6 0.3 1.4 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-CHCC PF10276.4 gi|57639959|ref|YP_182437.1| - 0.044 13.6 2.1 0.082 12.7 0.2 2.1 1 1 1 2 2 2 0 Zinc-finger domain Cys_rich_CPXG PF14255.1 gi|57639959|ref|YP_182437.1| - 0.19 11.5 1.4 0.84 9.5 0.1 2.2 2 0 0 2 2 2 0 Cysteine-rich CPXCG zf-Di19 PF05605.7 gi|57639959|ref|YP_182437.1| - 0.2 11.7 7.0 1.8 8.7 0.5 2.3 1 1 1 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding zf-RING_3 PF14369.1 gi|57639959|ref|YP_182437.1| - 0.6 10.1 3.0 2.1 8.3 2.2 1.8 1 1 1 2 2 2 0 zinc-finger Zn_Tnp_IS1 PF03811.8 gi|57639959|ref|YP_182437.1| - 0.66 9.5 2.4 11 5.6 0.3 2.5 2 0 0 2 2 2 0 InsA N-terminal domain zinc_ribbon_2 PF13240.1 gi|57639959|ref|YP_182437.1| - 0.83 9.2 4.2 3.7 7.1 3.0 2.0 1 1 0 1 1 1 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|57639959|ref|YP_182437.1| - 0.91 8.8 3.6 3.1 7.2 2.5 1.9 1 1 0 1 1 1 0 TFIIB zinc-binding CpXC PF14353.1 gi|57639959|ref|YP_182437.1| - 1.6 8.6 5.1 4.5 7.2 0.1 2.5 2 1 1 3 3 2 0 CpXC protein zf-ribbon_3 PF13248.1 gi|57639960|ref|YP_182438.1| - 0.00056 19.0 1.9 0.0011 18.0 1.3 1.5 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|57639960|ref|YP_182438.1| - 0.00095 18.5 1.2 0.0028 17.0 0.8 1.8 1 1 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|57639960|ref|YP_182438.1| - 0.017 14.9 0.2 0.017 14.9 0.1 1.6 2 0 0 2 2 2 0 Double zinc ribbon zf-NADH-PPase PF09297.6 gi|57639960|ref|YP_182438.1| - 0.017 14.5 0.4 0.035 13.6 0.3 1.5 1 0 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain Prok-RING_1 PF14446.1 gi|57639960|ref|YP_182438.1| - 0.11 12.2 0.2 0.11 12.2 0.1 1.8 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 DNA_RNApol_7kD PF03604.8 gi|57639960|ref|YP_182438.1| - 0.11 11.9 0.5 0.24 10.9 0.3 1.6 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit DUF1451 PF07295.6 gi|57639960|ref|YP_182438.1| - 0.16 11.7 2.0 0.25 11.0 0.2 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1451) zf-Mss51 PF13824.1 gi|57639960|ref|YP_182438.1| - 0.23 11.3 4.5 9.9 6.1 0.9 2.6 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 Zn-ribbon_8 PF09723.5 gi|57639960|ref|YP_182438.1| - 0.39 10.7 2.1 1.6 8.7 1.4 2.1 1 1 0 1 1 1 0 Zinc ribbon domain HAD_2 PF13419.1 gi|57639961|ref|YP_182439.1| - 4.2e-21 75.9 0.0 5.4e-21 75.5 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|57639961|ref|YP_182439.1| - 1.2e-09 37.7 0.0 2.1e-09 36.9 0.0 1.5 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.21 gi|57639961|ref|YP_182439.1| - 5e-08 33.6 0.0 2.5e-07 31.3 0.0 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|57639961|ref|YP_182439.1| - 0.0001 22.5 0.0 0.00016 21.8 0.0 1.3 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase NIF PF03031.13 gi|57639961|ref|YP_182439.1| - 0.0019 17.8 0.0 0.098 12.3 0.0 2.2 1 1 0 1 1 1 1 NLI interacting factor-like phosphatase Hydrolase_3 PF08282.7 gi|57639961|ref|YP_182439.1| - 0.1 12.1 0.0 0.61 9.6 0.0 2.0 2 0 0 2 2 2 0 haloacid dehalogenase-like hydrolase UPF0066 PF01980.11 gi|57639962|ref|YP_182440.1| - 2.4e-35 121.0 0.1 2.2e-34 118.0 0.0 2.0 2 0 0 2 2 2 1 Uncharacterised protein family UPF0066 AdoHcyase PF05221.12 gi|57639963|ref|YP_182441.1| - 3.6e-69 232.6 0.0 4.1e-69 232.5 0.0 1.0 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase AdoHcyase_NAD PF00670.16 gi|57639963|ref|YP_182441.1| - 6.7e-51 172.3 0.2 1.1e-50 171.6 0.1 1.3 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|57639963|ref|YP_182441.1| - 1.1e-09 37.6 0.0 2.8e-09 36.3 0.0 1.6 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.7 gi|57639963|ref|YP_182441.1| - 3.5e-07 29.7 0.1 7.2e-07 28.7 0.0 1.5 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain 3HCDH_N PF02737.13 gi|57639963|ref|YP_182441.1| - 0.0041 16.7 3.0 0.13 11.8 0.8 2.4 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain THF_DHG_CYH_C PF02882.14 gi|57639963|ref|YP_182441.1| - 0.0053 15.8 0.4 0.032 13.3 0.2 2.0 1 1 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AlaDh_PNT_C PF01262.16 gi|57639963|ref|YP_182441.1| - 0.006 16.1 0.2 0.012 15.1 0.1 1.5 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain TrkA_N PF02254.13 gi|57639963|ref|YP_182441.1| - 0.0081 16.1 0.6 0.016 15.1 0.1 1.8 2 0 0 2 2 2 1 TrkA-N domain Pyr_redox_2 PF07992.9 gi|57639963|ref|YP_182441.1| - 0.015 15.1 0.5 0.036 13.9 0.2 1.8 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Shikimate_DH PF01488.15 gi|57639963|ref|YP_182441.1| - 0.028 14.5 0.2 0.11 12.5 0.1 2.0 2 1 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase NifT PF06988.6 gi|57639963|ref|YP_182441.1| - 0.031 13.7 0.0 0.086 12.3 0.0 1.8 1 0 0 1 1 1 0 NifT/FixU protein GTP-bdg_N PF13167.1 gi|57639963|ref|YP_182441.1| - 0.1 12.7 0.0 0.24 11.5 0.0 1.6 1 0 0 1 1 1 0 GTP-binding GTPase N-terminal Lactamase_B PF00753.22 gi|57639964|ref|YP_182442.1| - 1.1e-10 41.5 0.5 2.1e-10 40.5 0.4 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|57639964|ref|YP_182442.1| - 0.0055 16.2 0.1 0.0084 15.6 0.1 1.4 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Cyclase PF04199.8 gi|57639965|ref|YP_182443.1| - 5.4e-25 88.0 0.0 6.5e-23 81.2 0.0 2.2 1 1 0 1 1 1 1 Putative cyclase Rpr2 PF04032.11 gi|57639966|ref|YP_182444.1| - 1.1e-21 76.4 0.2 1.7e-21 75.9 0.1 1.3 1 0 0 1 1 1 1 RNAse P Rpr2/Rpp21/SNM1 subunit domain DUF164 PF02591.10 gi|57639966|ref|YP_182444.1| - 0.021 14.6 0.3 0.044 13.6 0.2 1.5 1 0 0 1 1 1 0 Putative zinc ribbon domain Cytochrome_C7 PF14522.1 gi|57639966|ref|YP_182444.1| - 0.078 12.6 0.0 0.21 11.2 0.0 1.6 1 1 0 1 1 1 0 Cytochrome c7 NMD3 PF04981.8 gi|57639966|ref|YP_182444.1| - 0.087 11.9 2.1 0.18 10.8 1.5 1.8 1 1 0 1 1 1 0 NMD3 family zf-ribbon_3 PF13248.1 gi|57639966|ref|YP_182444.1| - 0.091 12.0 0.7 2.9 7.2 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain RNA_POL_M_15KD PF02150.11 gi|57639966|ref|YP_182444.1| - 0.11 12.1 0.2 7.2 6.3 0.0 2.3 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit RecR PF02132.10 gi|57639966|ref|YP_182444.1| - 0.9 9.0 3.3 4.4 6.8 0.1 2.3 2 0 0 2 2 2 0 RecR protein EF-hand_5 PF13202.1 gi|57639967|ref|YP_182445.1| - 0.11 11.8 0.1 0.66 9.4 0.0 2.3 2 0 0 2 2 2 0 EF hand NPV_P10 PF05531.7 gi|57639968|ref|YP_182446.1| - 0.0013 18.9 4.2 0.15 12.3 0.1 4.6 1 1 2 4 4 4 1 Nucleopolyhedrovirus P10 protein HALZ PF02183.13 gi|57639968|ref|YP_182446.1| - 0.0013 18.3 3.7 0.0013 18.3 2.6 5.1 3 1 1 4 4 4 1 Homeobox associated leucine zipper Phage_GP20 PF06810.6 gi|57639968|ref|YP_182446.1| - 0.008 15.6 7.1 0.008 15.6 4.9 3.3 1 1 2 3 3 3 1 Phage minor structural protein GP20 STAT_int PF02865.12 gi|57639968|ref|YP_182446.1| - 0.014 15.3 1.3 0.014 15.3 0.9 3.2 3 2 1 4 4 4 0 STAT protein, protein interaction domain NAS PF03059.11 gi|57639968|ref|YP_182446.1| - 0.064 12.4 2.6 3.3 6.7 0.1 2.4 2 0 0 2 2 2 0 Nicotianamine synthase protein DUF2721 PF11026.3 gi|57639968|ref|YP_182446.1| - 0.081 12.5 10.9 0.67 9.6 0.7 2.9 2 1 1 3 3 3 0 Protein of unknown function (DUF2721) GP41 PF00517.12 gi|57639968|ref|YP_182446.1| - 0.089 12.3 1.4 0.21 11.0 0.1 2.4 1 1 0 1 1 1 0 Retroviral envelope protein FlgM PF04316.8 gi|57639968|ref|YP_182446.1| - 0.1 12.5 2.7 0.22 11.4 0.6 2.7 1 1 1 2 2 2 0 Anti-sigma-28 factor, FlgM DUF2937 PF11157.3 gi|57639968|ref|YP_182446.1| - 0.42 9.9 3.1 0.66 9.2 0.3 2.5 1 1 1 3 3 3 0 Protein of unknown function (DUF2937) Transposase_22 PF02994.9 gi|57639968|ref|YP_182446.1| - 0.57 8.6 40.3 0.088 11.2 14.6 3.0 1 1 2 3 3 3 0 L1 transposable element Seadorna_VP6 PF07407.6 gi|57639968|ref|YP_182446.1| - 0.83 8.3 12.7 0.28 9.8 1.1 2.4 2 0 0 2 2 2 0 Seadornavirus VP6 protein DUF972 PF06156.8 gi|57639968|ref|YP_182446.1| - 1.4 9.2 41.2 0.062 13.6 4.2 5.1 1 1 3 5 5 4 0 Protein of unknown function (DUF972) Cep57_CLD_2 PF14197.1 gi|57639968|ref|YP_182446.1| - 2 8.4 42.4 0.09 12.7 3.7 4.5 2 1 1 3 3 3 0 Centrosome localisation domain of PPC89 MtrG PF04210.8 gi|57639968|ref|YP_182446.1| - 2.2 7.9 0.0 2.2 7.9 0.0 4.3 3 1 2 5 5 5 0 Tetrahydromethanopterin S-methyltransferase, subunit G DASH_Dam1 PF08653.5 gi|57639968|ref|YP_182446.1| - 3 7.6 10.3 0.68 9.7 0.1 4.5 5 1 1 6 6 6 0 DASH complex subunit Dam1 IncA PF04156.9 gi|57639968|ref|YP_182446.1| - 6.4 6.3 47.6 0.1 12.2 5.6 3.5 1 1 2 3 3 3 0 IncA protein SLA_LP_auto_ag PF05889.8 gi|57639968|ref|YP_182446.1| - 6.7 5.0 9.4 0.15 10.4 0.1 2.4 1 1 1 2 2 2 0 Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) DUF4559 PF15112.1 gi|57639968|ref|YP_182446.1| - 7.1 5.7 24.9 1.1 8.3 3.9 2.7 1 1 2 3 3 3 0 Domain of unknown function (DUF4559) HEAT_2 PF13646.1 gi|57639969|ref|YP_182447.1| - 1.9e-14 53.6 1.4 1.7e-08 34.6 0.1 3.2 2 1 1 3 3 3 2 HEAT repeats HEAT PF02985.17 gi|57639969|ref|YP_182447.1| - 5.2e-11 41.6 0.2 1.5e-05 24.6 0.0 3.6 3 0 0 3 3 3 2 HEAT repeat Adaptin_N PF01602.15 gi|57639969|ref|YP_182447.1| - 4.5e-10 38.4 1.5 9.1e-10 37.4 1.1 1.5 1 1 0 1 1 1 1 Adaptin N terminal region HEAT_EZ PF13513.1 gi|57639969|ref|YP_182447.1| - 4.7e-09 36.4 2.8 0.00017 22.0 0.1 4.4 3 1 2 5 5 5 2 HEAT-like repeat Cnd1 PF12717.2 gi|57639969|ref|YP_182447.1| - 4.1e-07 30.0 3.6 2.6e-05 24.1 0.2 3.0 1 1 2 3 3 3 1 non-SMC mitotic condensation complex subunit 1 Nipped-B_C PF12830.2 gi|57639969|ref|YP_182447.1| - 5.4e-05 22.9 0.1 0.00047 19.8 0.0 2.1 2 0 0 2 2 2 1 Sister chromatid cohesion C-terminus RIX1 PF08167.7 gi|57639969|ref|YP_182447.1| - 0.00029 20.5 0.1 0.0013 18.4 0.0 1.9 2 0 0 2 2 2 1 rRNA processing/ribosome biogenesis DUF2435 PF10363.4 gi|57639969|ref|YP_182447.1| - 0.0017 18.2 0.7 1.3 8.9 0.0 2.7 2 1 0 2 2 2 2 Protein of unknown function (DUF2435) DUF3730 PF12530.3 gi|57639969|ref|YP_182447.1| - 0.014 15.2 0.1 0.17 11.7 0.0 2.4 2 1 1 3 3 3 0 Protein of unknown function (DUF3730) Vac14_Fab1_bd PF12755.2 gi|57639969|ref|YP_182447.1| - 0.019 15.3 0.2 0.083 13.2 0.0 2.2 2 2 0 2 2 2 0 Vacuolar 14 Fab1-binding region Proteasom_PSMB PF10508.4 gi|57639969|ref|YP_182447.1| - 0.033 12.4 1.6 0.13 10.4 0.2 2.1 2 0 0 2 2 2 0 Proteasome non-ATPase 26S subunit Cas6 PF09559.5 gi|57639969|ref|YP_182447.1| - 0.1 12.3 1.2 0.16 11.6 0.1 1.8 2 0 0 2 2 2 0 Cas6 Crispr GatB_Yqey PF02637.13 gi|57639969|ref|YP_182447.1| - 0.12 12.0 5.9 0.17 11.5 0.2 2.7 2 1 0 2 2 2 0 GatB domain PQQ_2 PF13360.1 gi|57639970|ref|YP_182448.1| - 1.9e-13 50.4 3.3 0.00096 18.6 0.2 4.2 1 1 4 5 5 5 5 PQQ-like domain PQQ_3 PF13570.1 gi|57639970|ref|YP_182448.1| - 7.9e-10 38.6 32.7 7.9e-07 29.1 0.0 7.8 6 2 0 6 6 6 4 PQQ-like domain PQQ PF01011.16 gi|57639970|ref|YP_182448.1| - 3.2e-05 23.2 2.9 0.7 9.5 0.0 5.9 7 0 0 7 7 7 2 PQQ enzyme repeat LVIVD PF08309.6 gi|57639970|ref|YP_182448.1| - 0.046 12.7 0.3 0.046 12.7 0.2 2.4 2 0 0 2 2 2 0 LVIVD repeat DUF1495 PF07381.6 gi|57639971|ref|YP_182449.1| - 9.6e-36 121.3 1.1 1.1e-35 121.1 0.8 1.0 1 0 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) HTH_IclR PF09339.5 gi|57639971|ref|YP_182449.1| - 0.04 13.5 0.0 0.42 10.2 0.0 2.2 2 0 0 2 2 2 0 IclR helix-turn-helix domain HTH_5 PF01022.15 gi|57639971|ref|YP_182449.1| - 0.047 13.3 0.1 0.11 12.2 0.0 1.6 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family HTH_45 PF14947.1 gi|57639971|ref|YP_182449.1| - 0.054 13.3 0.2 0.19 11.5 0.1 1.8 2 0 0 2 2 2 0 Winged helix-turn-helix Methyltransf_23 PF13489.1 gi|57639972|ref|YP_182450.1| - 1.2e-12 47.8 0.0 3e-12 46.5 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|57639972|ref|YP_182450.1| - 3.9e-12 46.4 0.0 2.1e-11 44.1 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|57639972|ref|YP_182450.1| - 6.4e-12 45.8 0.0 5.9e-11 42.7 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|57639972|ref|YP_182450.1| - 1.4e-09 37.7 0.0 2.8e-09 36.7 0.0 1.5 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|57639972|ref|YP_182450.1| - 1.8e-08 34.9 0.0 3.9e-08 33.8 0.0 1.6 2 0 0 2 2 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|57639972|ref|YP_182450.1| - 4.9e-08 32.3 0.0 7.4e-08 31.7 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family PCMT PF01135.14 gi|57639972|ref|YP_182450.1| - 1.3e-05 24.8 0.0 2e-05 24.2 0.0 1.4 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) TehB PF03848.9 gi|57639972|ref|YP_182450.1| - 0.00048 19.3 0.0 0.00071 18.7 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_25 PF13649.1 gi|57639972|ref|YP_182450.1| - 0.0018 18.6 0.0 0.0036 17.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.15 gi|57639972|ref|YP_182450.1| - 0.0026 16.8 0.0 0.037 13.1 0.0 2.1 2 0 0 2 2 2 1 Mycolic acid cyclopropane synthetase Methyltransf_26 PF13659.1 gi|57639972|ref|YP_182450.1| - 0.0052 16.8 0.0 0.012 15.6 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.7 gi|57639972|ref|YP_182450.1| - 0.012 15.0 0.0 0.046 13.1 0.0 1.9 1 1 0 1 1 1 0 Methionine biosynthesis protein MetW NNMT_PNMT_TEMT PF01234.12 gi|57639972|ref|YP_182450.1| - 0.07 12.0 0.0 0.15 11.0 0.0 1.5 2 0 0 2 2 2 0 NNMT/PNMT/TEMT family FmrO PF07091.6 gi|57639972|ref|YP_182450.1| - 0.076 11.9 0.0 0.12 11.3 0.0 1.3 1 0 0 1 1 1 0 Ribosomal RNA methyltransferase (FmrO) MTS PF05175.9 gi|57639972|ref|YP_182450.1| - 0.079 12.3 0.0 0.17 11.2 0.0 1.5 1 1 0 1 1 1 0 Methyltransferase small domain NodS PF05401.6 gi|57639972|ref|YP_182450.1| - 0.086 12.2 0.0 0.13 11.6 0.0 1.2 1 0 0 1 1 1 0 Nodulation protein S (NodS) Sedlin_N PF04628.8 gi|57639972|ref|YP_182450.1| - 0.13 12.1 0.0 0.27 11.0 0.0 1.6 1 0 0 1 1 1 0 Sedlin, N-terminal conserved region Arch_flagellin PF01917.11 gi|57639973|ref|YP_182451.1| - 1.2e-74 250.0 4.7 1.5e-74 249.7 3.3 1.1 1 0 0 1 1 1 1 Archaebacterial flagellin Tad PF13400.1 gi|57639973|ref|YP_182451.1| - 0.11 12.5 3.7 0.21 11.6 2.5 1.4 1 0 0 1 1 1 0 Putative Flp pilus-assembly TadE/G-like Arch_flagellin PF01917.11 gi|57639974|ref|YP_182452.1| - 6.9e-65 218.2 15.5 1.2e-45 155.4 7.3 2.6 1 1 0 2 2 2 2 Archaebacterial flagellin CarboxypepD_reg PF13620.1 gi|57639974|ref|YP_182452.1| - 0.01 15.8 2.2 0.97 9.5 0.2 3.7 2 0 0 2 2 2 0 Carboxypeptidase regulatory-like domain Arch_flagellin PF01917.11 gi|57639975|ref|YP_182453.1| - 4.2e-70 235.2 4.4 4.8e-70 235.0 3.0 1.0 1 0 0 1 1 1 1 Archaebacterial flagellin EF-hand_6 PF13405.1 gi|57639975|ref|YP_182453.1| - 0.093 12.6 1.1 6.5 6.9 0.0 2.7 2 0 0 2 2 2 0 EF-hand domain EF-hand_1 PF00036.27 gi|57639975|ref|YP_182453.1| - 0.39 10.1 2.0 12 5.4 0.4 2.7 2 0 0 2 2 2 0 EF hand Arch_flagellin PF01917.11 gi|57639976|ref|YP_182454.1| - 2.8e-60 203.1 2.5 3.3e-60 202.9 1.8 1.0 1 0 0 1 1 1 1 Archaebacterial flagellin DUF1049 PF06305.6 gi|57639976|ref|YP_182454.1| - 0.14 11.6 0.5 0.22 10.9 0.3 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1049) Arch_flagellin PF01917.11 gi|57639977|ref|YP_182455.1| - 3.5e-63 212.6 0.1 4.1e-63 212.4 0.1 1.0 1 0 0 1 1 1 1 Archaebacterial flagellin DUF1049 PF06305.6 gi|57639977|ref|YP_182455.1| - 0.099 12.1 0.7 0.17 11.3 0.5 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1049) FlaC_arch PF05377.6 gi|57639978|ref|YP_182456.1| - 2.5e-26 91.2 19.0 1.5e-24 85.6 1.3 3.2 3 1 0 3 3 3 2 Flagella accessory protein C (FlaC) WEMBL PF05701.6 gi|57639978|ref|YP_182456.1| - 8.9e-06 24.4 8.6 1.1e-05 24.1 6.0 1.1 1 0 0 1 1 1 1 Weak chloroplast movement under blue light Reo_sigmaC PF04582.7 gi|57639978|ref|YP_182456.1| - 0.00017 20.9 0.4 0.00043 19.5 0.3 1.5 1 1 0 1 1 1 1 Reovirus sigma C capsid protein CENP-F_leu_zip PF10473.4 gi|57639978|ref|YP_182456.1| - 0.00045 20.0 16.6 0.029 14.2 7.7 2.1 1 1 1 2 2 2 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Laminin_II PF06009.7 gi|57639978|ref|YP_182456.1| - 0.00067 19.4 6.7 0.0013 18.4 4.7 1.5 1 1 0 1 1 1 1 Laminin Domain II DHC_N2 PF08393.8 gi|57639978|ref|YP_182456.1| - 0.001 17.6 5.6 0.058 11.8 0.2 2.1 1 1 1 2 2 2 2 Dynein heavy chain, N-terminal region 2 Baculo_PEP_C PF04513.7 gi|57639978|ref|YP_182456.1| - 0.001 18.8 3.7 0.0023 17.7 2.6 1.5 1 1 0 1 1 1 1 Baculovirus polyhedron envelope protein, PEP, C terminus Syntaxin-6_N PF09177.6 gi|57639978|ref|YP_182456.1| - 0.0013 19.1 11.2 0.008 16.5 1.5 2.8 1 1 1 2 2 2 1 Syntaxin 6, N-terminal Spc7 PF08317.6 gi|57639978|ref|YP_182456.1| - 0.0016 17.1 16.9 0.046 12.3 7.0 2.0 1 1 1 2 2 2 2 Spc7 kinetochore protein Nsp1_C PF05064.8 gi|57639978|ref|YP_182456.1| - 0.0018 17.9 2.6 0.0018 17.9 1.8 2.7 1 1 2 3 3 3 1 Nsp1-like C-terminal region AAA_13 PF13166.1 gi|57639978|ref|YP_182456.1| - 0.0027 16.2 7.6 0.0042 15.6 5.3 1.3 1 0 0 1 1 1 1 AAA domain CCDC155 PF14662.1 gi|57639978|ref|YP_182456.1| - 0.0027 17.3 13.0 0.0063 16.1 9.2 1.4 1 1 0 1 1 1 1 Coiled-coil region of CCDC155 EzrA PF06160.7 gi|57639978|ref|YP_182456.1| - 0.0031 15.7 12.7 0.041 12.0 3.7 2.0 1 1 1 2 2 2 2 Septation ring formation regulator, EzrA DUF4140 PF13600.1 gi|57639978|ref|YP_182456.1| - 0.0036 17.7 12.2 0.39 11.1 0.3 3.4 1 1 2 3 3 3 1 N-terminal domain of unknown function (DUF4140) DUF4618 PF15397.1 gi|57639978|ref|YP_182456.1| - 0.0043 16.4 11.0 0.3 10.4 0.3 2.3 1 1 1 2 2 2 2 Domain of unknown function (DUF4618) DUF1664 PF07889.7 gi|57639978|ref|YP_182456.1| - 0.0049 16.6 10.5 0.14 11.9 1.2 2.3 1 1 1 2 2 2 2 Protein of unknown function (DUF1664) DUF2730 PF10805.3 gi|57639978|ref|YP_182456.1| - 0.005 16.5 10.6 1 9.1 4.1 3.0 1 1 2 3 3 3 1 Protein of unknown function (DUF2730) MscS_porin PF12795.2 gi|57639978|ref|YP_182456.1| - 0.0055 16.0 3.4 0.0055 16.0 2.4 2.1 1 1 1 2 2 2 1 Mechanosensitive ion channel porin domain Fib_alpha PF08702.5 gi|57639978|ref|YP_182456.1| - 0.0057 16.7 4.6 0.0057 16.7 3.2 2.1 1 1 1 2 2 2 1 Fibrinogen alpha/beta chain family Seryl_tRNA_N PF02403.17 gi|57639978|ref|YP_182456.1| - 0.0059 16.6 16.2 0.32 11.0 1.3 2.3 1 1 1 2 2 2 2 Seryl-tRNA synthetase N-terminal domain Fmp27_WPPW PF10359.4 gi|57639978|ref|YP_182456.1| - 0.0063 14.9 6.0 0.008 14.6 4.1 1.3 1 0 0 1 1 1 1 RNA pol II promoter Fmp27 protein domain Mnd1 PF03962.10 gi|57639978|ref|YP_182456.1| - 0.01 15.5 8.4 0.025 14.2 5.8 1.7 1 1 0 1 1 1 0 Mnd1 family ADIP PF11559.3 gi|57639978|ref|YP_182456.1| - 0.011 15.6 9.4 0.013 15.3 1.7 2.1 1 1 1 2 2 2 0 Afadin- and alpha -actinin-Binding Perilipin PF03036.11 gi|57639978|ref|YP_182456.1| - 0.012 14.4 0.7 0.015 14.1 0.5 1.1 1 0 0 1 1 1 0 Perilipin family AAA_27 PF13514.1 gi|57639978|ref|YP_182456.1| - 0.014 13.1 6.6 0.019 12.6 4.5 1.2 1 0 0 1 1 1 0 AAA domain DivIC PF04977.10 gi|57639978|ref|YP_182456.1| - 0.015 14.7 13.7 0.18 11.3 0.7 3.1 2 1 1 3 3 3 0 Septum formation initiator Vps53_N PF04100.7 gi|57639978|ref|YP_182456.1| - 0.018 13.8 8.8 0.026 13.3 5.9 1.4 1 1 0 1 1 1 0 Vps53-like, N-terminal Nup54 PF13874.1 gi|57639978|ref|YP_182456.1| - 0.019 14.6 4.6 0.047 13.3 3.5 1.5 1 1 0 1 1 1 0 Nucleoporin complex subunit 54 Phlebovirus_NSM PF07246.6 gi|57639978|ref|YP_182456.1| - 0.02 14.0 6.8 1.3 8.0 4.6 2.0 1 1 0 1 1 1 0 Phlebovirus nonstructural protein NS-M DASH_Dam1 PF08653.5 gi|57639978|ref|YP_182456.1| - 0.022 14.5 0.4 0.022 14.5 0.3 3.1 2 1 1 3 3 3 0 DASH complex subunit Dam1 DUF3584 PF12128.3 gi|57639978|ref|YP_182456.1| - 0.031 11.6 7.0 0.038 11.3 4.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) LOH1CR12 PF10158.4 gi|57639978|ref|YP_182456.1| - 0.033 13.9 4.4 0.34 10.7 0.2 2.2 1 1 1 2 2 2 0 Tumour suppressor protein Cep57_MT_bd PF06657.8 gi|57639978|ref|YP_182456.1| - 0.033 14.1 7.7 1.5 8.7 0.1 3.0 2 1 0 2 2 2 0 Centrosome microtubule-binding domain of Cep57 IncA PF04156.9 gi|57639978|ref|YP_182456.1| - 0.036 13.6 15.0 0.081 12.5 10.4 1.6 1 1 0 1 1 1 0 IncA protein DUF1843 PF08898.5 gi|57639978|ref|YP_182456.1| - 0.04 13.9 4.0 0.57 10.2 0.1 3.0 2 1 1 3 3 2 0 Domain of unknown function (DUF1843) DUF1319 PF07028.6 gi|57639978|ref|YP_182456.1| - 0.04 14.1 12.0 0.16 12.1 3.9 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF1319) DUF1192 PF06698.6 gi|57639978|ref|YP_182456.1| - 0.042 13.6 0.9 0.042 13.6 0.6 2.9 2 2 1 3 3 2 0 Protein of unknown function (DUF1192) DUF2450 PF10475.4 gi|57639978|ref|YP_182456.1| - 0.046 12.6 6.6 0.041 12.7 0.9 2.0 1 1 1 2 2 2 0 Protein of unknown function N-terminal domain (DUF2450) APG6 PF04111.7 gi|57639978|ref|YP_182456.1| - 0.047 12.7 12.9 0.13 11.2 9.0 1.7 1 1 0 1 1 1 0 Autophagy protein Apg6 TBPIP PF07106.8 gi|57639978|ref|YP_182456.1| - 0.056 13.0 17.1 1.8 8.1 11.9 2.2 1 1 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Erp_C PF06780.6 gi|57639978|ref|YP_182456.1| - 0.059 13.2 11.6 0.39 10.5 2.9 2.3 1 1 1 2 2 2 0 Erp protein C-terminus IFT57 PF10498.4 gi|57639978|ref|YP_182456.1| - 0.06 12.0 14.8 0.14 10.8 10.3 1.5 1 1 0 1 1 1 0 Intra-flagellar transport protein 57 DUF3450 PF11932.3 gi|57639978|ref|YP_182456.1| - 0.063 12.5 6.2 0.2 10.8 4.5 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF3450) YPEB PF14620.1 gi|57639978|ref|YP_182456.1| - 0.067 12.1 9.1 0.056 12.4 0.9 2.4 1 1 2 3 3 3 0 YpeB sporulation Hemerythrin PF01814.18 gi|57639978|ref|YP_182456.1| - 0.069 13.3 4.0 0.4 10.8 2.5 2.4 1 1 1 2 2 1 0 Hemerythrin HHE cation binding domain bZIP_1 PF00170.16 gi|57639978|ref|YP_182456.1| - 0.071 13.0 16.5 0.11 12.5 0.1 3.4 2 1 1 3 3 3 0 bZIP transcription factor Sec8_exocyst PF04048.9 gi|57639978|ref|YP_182456.1| - 0.072 12.7 4.2 0.17 11.5 2.0 1.9 1 1 1 2 2 2 0 Sec8 exocyst complex component specific domain PilJ PF13675.1 gi|57639978|ref|YP_182456.1| - 0.073 13.3 0.6 0.46 10.8 0.4 2.1 1 1 0 1 1 1 0 Type IV pili methyl-accepting chemotaxis transducer N-term CENP-Q PF13094.1 gi|57639978|ref|YP_182456.1| - 0.075 13.0 11.9 0.11 12.4 8.2 1.4 1 1 0 1 1 1 0 CENP-Q, a CENPA-CAD centromere complex subunit DUF342 PF03961.8 gi|57639978|ref|YP_182456.1| - 0.076 11.4 13.6 0.018 13.5 4.9 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF342) MutS_III PF05192.13 gi|57639978|ref|YP_182456.1| - 0.077 12.7 1.0 0.098 12.4 0.7 1.1 1 0 0 1 1 1 0 MutS domain III GAS PF13851.1 gi|57639978|ref|YP_182456.1| - 0.078 12.1 15.1 0.36 9.9 6.5 2.1 1 1 1 2 2 2 0 Growth-arrest specific micro-tubule binding LRS4 PF10422.4 gi|57639978|ref|YP_182456.1| - 0.088 12.1 6.7 0.11 11.8 4.6 1.1 1 0 0 1 1 1 0 Monopolin complex subunit LRS4 Atg14 PF10186.4 gi|57639978|ref|YP_182456.1| - 0.089 11.7 12.8 0.11 11.3 3.6 2.0 1 1 1 2 2 2 0 UV radiation resistance protein and autophagy-related subunit 14 COG5 PF10392.4 gi|57639978|ref|YP_182456.1| - 0.089 12.7 6.7 1.1 9.2 0.6 2.3 1 1 1 2 2 2 0 Golgi transport complex subunit 5 BLOC1_2 PF10046.4 gi|57639978|ref|YP_182456.1| - 0.09 12.9 12.6 0.4 10.8 3.6 2.5 1 1 1 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF4200 PF13863.1 gi|57639978|ref|YP_182456.1| - 0.091 12.7 17.2 0.069 13.0 3.7 3.1 1 1 0 2 2 2 0 Domain of unknown function (DUF4200) NPV_P10 PF05531.7 gi|57639978|ref|YP_182456.1| - 0.1 12.8 10.6 53 4.1 7.3 2.8 1 1 0 1 1 1 0 Nucleopolyhedrovirus P10 protein DUF812 PF05667.6 gi|57639978|ref|YP_182456.1| - 0.1 11.0 14.0 1.7 7.0 9.2 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF812) MAD PF05557.8 gi|57639978|ref|YP_182456.1| - 0.12 10.3 13.5 0.26 9.3 9.4 1.5 1 1 0 1 1 1 0 Mitotic checkpoint protein ATG16 PF08614.6 gi|57639978|ref|YP_182456.1| - 0.13 12.0 15.7 0.13 12.1 6.3 2.0 1 1 1 2 2 2 0 Autophagy protein 16 (ATG16) DUF677 PF05055.7 gi|57639978|ref|YP_182456.1| - 0.14 10.8 8.8 0.15 10.6 4.4 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF677) DUF1043 PF06295.7 gi|57639978|ref|YP_182456.1| - 0.14 11.7 6.2 0.21 11.2 0.5 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF1043) MCPsignal PF00015.16 gi|57639978|ref|YP_182456.1| - 0.14 11.6 2.8 0.61 9.6 2.1 1.8 1 1 0 1 1 1 0 Methyl-accepting chemotaxis protein (MCP) signalling domain DUF848 PF05852.6 gi|57639978|ref|YP_182456.1| - 0.16 11.7 9.1 0.25 11.1 5.9 1.6 1 1 0 1 1 1 0 Gammaherpesvirus protein of unknown function (DUF848) DUF2321 PF10083.4 gi|57639978|ref|YP_182456.1| - 0.18 11.2 4.1 0.23 10.9 0.7 2.0 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2321) Bap31 PF05529.7 gi|57639978|ref|YP_182456.1| - 0.19 11.1 11.2 0.67 9.3 2.2 2.2 1 1 1 2 2 2 0 B-cell receptor-associated protein 31-like Bacillus_HBL PF05791.6 gi|57639978|ref|YP_182456.1| - 0.2 11.0 9.1 0.53 9.6 5.0 2.0 1 1 0 1 1 1 0 Bacillus haemolytic enterotoxin (HBL) FliD_N PF02465.13 gi|57639978|ref|YP_182456.1| - 0.21 11.9 2.4 4.6 7.6 0.2 2.6 1 1 1 2 2 2 0 Flagellar hook-associated protein 2 N-terminus DUF948 PF06103.6 gi|57639978|ref|YP_182456.1| - 0.21 11.4 8.3 0.38 10.6 1.1 2.9 1 1 2 3 3 3 0 Bacterial protein of unknown function (DUF948) Microtub_assoc PF07989.6 gi|57639978|ref|YP_182456.1| - 0.21 11.4 12.9 1.7 8.5 1.1 2.9 2 2 0 2 2 2 0 Microtubule associated MbeD_MobD PF04899.7 gi|57639978|ref|YP_182456.1| - 0.26 11.2 2.9 4.5 7.2 0.5 2.9 2 1 0 2 2 2 0 MbeD/MobD like Viral_P18 PF04521.8 gi|57639978|ref|YP_182456.1| - 0.27 10.6 5.3 1.4 8.3 0.7 2.6 1 1 1 2 2 2 0 ssRNA positive strand viral 18kD cysteine rich protein WXG100 PF06013.7 gi|57639978|ref|YP_182456.1| - 0.28 11.2 3.0 6.6 6.8 0.0 3.0 1 1 1 3 3 3 0 Proteins of 100 residues with WXG Enkurin PF13864.1 gi|57639978|ref|YP_182456.1| - 0.31 11.2 14.6 1.1 9.5 5.0 2.3 1 1 1 2 2 2 0 Calmodulin-binding DUF972 PF06156.8 gi|57639978|ref|YP_182456.1| - 0.33 11.3 12.0 9.4 6.6 7.2 2.7 1 1 1 2 2 2 0 Protein of unknown function (DUF972) TMF_DNA_bd PF12329.3 gi|57639978|ref|YP_182456.1| - 0.36 10.6 18.1 0.1 12.4 4.2 2.7 2 1 1 3 3 2 0 TATA element modulatory factor 1 DNA binding DOG1 PF14144.1 gi|57639978|ref|YP_182456.1| - 0.38 10.8 1.6 11 6.0 0.1 2.4 2 1 0 2 2 2 0 Seed dormancy control TPR_MLP1_2 PF07926.7 gi|57639978|ref|YP_182456.1| - 0.38 10.4 12.3 0.24 11.1 3.8 2.4 1 1 1 2 2 2 0 TPR/MLP1/MLP2-like protein Adeno_PIX PF03955.9 gi|57639978|ref|YP_182456.1| - 0.4 11.2 4.0 3.7 8.1 0.4 2.2 1 1 1 2 2 2 0 Adenovirus hexon-associated protein (IX) DASH_Dad2 PF08654.5 gi|57639978|ref|YP_182456.1| - 0.4 10.7 8.3 0.42 10.6 1.3 2.9 1 1 3 4 4 4 0 DASH complex subunit Dad2 DUF2051 PF09738.4 gi|57639978|ref|YP_182456.1| - 0.44 9.7 10.8 0.13 11.4 3.3 2.1 1 1 1 2 2 2 0 Double stranded RNA binding protein (DUF2051) Prefoldin PF02996.12 gi|57639978|ref|YP_182456.1| - 0.47 10.1 13.4 0.17 11.5 0.6 3.2 2 1 1 3 3 3 0 Prefoldin subunit Vps51 PF08700.6 gi|57639978|ref|YP_182456.1| - 0.47 10.3 7.0 9.7 6.1 1.5 2.9 2 1 0 2 2 2 0 Vps51/Vps67 AKNA PF12443.3 gi|57639978|ref|YP_182456.1| - 0.48 10.4 9.2 2.4 8.2 2.5 2.7 1 1 1 2 2 2 0 AT-hook-containing transcription factor Lectin_N PF03954.9 gi|57639978|ref|YP_182456.1| - 0.48 9.8 2.5 1.2 8.5 0.7 2.1 1 1 1 2 2 2 0 Hepatic lectin, N-terminal domain End3 PF12761.2 gi|57639978|ref|YP_182456.1| - 0.5 9.9 7.9 0.9 9.1 2.5 2.1 2 0 0 2 2 2 0 Actin cytoskeleton-regulatory complex protein END3 RIC3 PF15361.1 gi|57639978|ref|YP_182456.1| - 0.51 10.5 2.8 0.37 10.9 0.8 1.5 2 0 0 2 2 1 0 Resistance to inhibitors of cholinesterase homologue 3 KAR9 PF08580.5 gi|57639978|ref|YP_182456.1| - 0.52 8.5 8.0 0.75 7.9 5.6 1.2 1 0 0 1 1 1 0 Yeast cortical protein KAR9 Occludin_ELL PF07303.8 gi|57639978|ref|YP_182456.1| - 0.55 10.9 8.3 13 6.5 5.4 2.6 1 1 0 1 1 1 0 Occludin homology domain FemAB PF02388.11 gi|57639978|ref|YP_182456.1| - 0.69 8.5 5.3 0.37 9.4 1.0 1.9 1 1 1 2 2 2 0 FemAB family Syntaxin PF00804.20 gi|57639978|ref|YP_182456.1| - 0.76 9.9 16.7 1.1 9.3 7.0 2.5 1 1 1 2 2 2 0 Syntaxin Allexi_40kDa PF05549.6 gi|57639978|ref|YP_182456.1| - 0.81 8.9 5.7 1.8 7.8 3.1 1.8 1 1 1 2 2 2 0 Allexivirus 40kDa protein Shugoshin_N PF07558.6 gi|57639978|ref|YP_182456.1| - 0.83 9.4 5.4 0.56 9.9 0.1 2.9 2 1 0 2 2 1 0 Shugoshin N-terminal coiled-coil region DUF1640 PF07798.6 gi|57639978|ref|YP_182456.1| - 0.83 9.6 11.8 54 3.7 8.2 2.2 1 1 0 1 1 1 0 Protein of unknown function (DUF1640) Prefoldin_2 PF01920.15 gi|57639978|ref|YP_182456.1| - 0.87 9.3 16.8 9.1 6.1 6.5 3.3 1 1 1 2 2 2 0 Prefoldin subunit IZUMO PF15005.1 gi|57639978|ref|YP_182456.1| - 0.94 9.5 4.1 1.5 8.8 2.8 1.3 1 0 0 1 1 1 0 Izumo sperm-egg fusion Prominin PF05478.6 gi|57639978|ref|YP_182456.1| - 0.97 6.8 5.0 1.3 6.4 0.6 1.8 1 1 1 2 2 2 0 Prominin GrpE PF01025.14 gi|57639978|ref|YP_182456.1| - 1 8.8 12.6 3.7 7.0 7.7 2.1 1 1 1 2 2 2 0 GrpE FlxA PF14282.1 gi|57639978|ref|YP_182456.1| - 1 9.3 14.2 2.6 8.0 2.2 2.6 1 1 1 2 2 2 0 FlxA-like protein Mitofilin PF09731.4 gi|57639978|ref|YP_182456.1| - 1 7.9 10.5 1.4 7.5 7.3 1.1 1 0 0 1 1 1 0 Mitochondrial inner membrane protein HALZ PF02183.13 gi|57639978|ref|YP_182456.1| - 1.1 9.0 9.3 1.4 8.6 0.0 3.3 3 0 0 3 3 3 0 Homeobox associated leucine zipper V_ATPase_I PF01496.14 gi|57639978|ref|YP_182456.1| - 1.1 6.9 12.3 3.6 5.3 8.5 1.7 1 1 0 1 1 1 0 V-type ATPase 116kDa subunit family Tmemb_cc2 PF10267.4 gi|57639978|ref|YP_182456.1| - 1.1 7.7 12.1 46 2.4 8.5 2.1 1 1 0 1 1 1 0 Predicted transmembrane and coiled-coil 2 protein DUF4559 PF15112.1 gi|57639978|ref|YP_182456.1| - 1.2 8.2 13.2 3.5 6.7 9.0 1.6 1 1 1 2 2 2 0 Domain of unknown function (DUF4559) LXG PF04740.7 gi|57639978|ref|YP_182456.1| - 1.3 8.7 12.1 12 5.6 4.3 2.9 1 1 2 3 3 3 0 LXG domain of WXG superfamily Sigma70_ner PF04546.8 gi|57639978|ref|YP_182456.1| - 1.4 8.4 10.8 2 7.9 7.5 1.2 1 0 0 1 1 1 0 Sigma-70, non-essential region Spc24 PF08286.6 gi|57639978|ref|YP_182456.1| - 1.6 8.4 13.0 3.9 7.1 3.7 2.7 1 1 2 3 3 3 0 Spc24 subunit of Ndc80 KxDL PF10241.4 gi|57639978|ref|YP_182456.1| - 1.7 8.5 4.9 2.8 7.9 0.4 2.3 1 1 1 2 2 2 0 Uncharacterized conserved protein IL2 PF00715.12 gi|57639978|ref|YP_182456.1| - 1.9 8.1 6.6 15 5.3 0.1 2.3 1 1 1 2 2 2 0 Interleukin 2 Corona_S2 PF01601.11 gi|57639978|ref|YP_182456.1| - 2.1 6.3 7.3 3 5.8 1.5 2.0 1 1 1 2 2 2 0 Coronavirus S2 glycoprotein BRE1 PF08647.6 gi|57639978|ref|YP_182456.1| - 2.1 8.3 12.0 0.98 9.4 4.4 2.4 1 1 1 2 2 2 0 BRE1 E3 ubiquitin ligase Halogen_Hydrol PF10112.4 gi|57639978|ref|YP_182456.1| - 2.2 7.6 6.8 2.8 7.2 0.2 2.7 1 1 2 3 3 3 0 5-bromo-4-chloroindolyl phosphate hydrolysis protein Orthopox_A5L PF06193.6 gi|57639978|ref|YP_182456.1| - 2.3 8.1 11.0 1.7 8.5 1.2 2.1 1 1 1 2 2 2 0 Orthopoxvirus A5L protein-like Ded_cyto PF06920.8 gi|57639978|ref|YP_182456.1| - 2.3 7.4 7.4 10 5.3 0.2 2.6 1 1 2 3 3 3 0 Dedicator of cytokinesis COG2 PF06148.6 gi|57639978|ref|YP_182456.1| - 2.4 8.0 7.9 30 4.4 0.2 2.8 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 Phage_GP20 PF06810.6 gi|57639978|ref|YP_182456.1| - 2.5 7.4 16.5 4e+02 0.3 11.4 2.8 1 1 0 1 1 1 0 Phage minor structural protein GP20 Tnp_P_element PF12017.3 gi|57639978|ref|YP_182456.1| - 2.6 7.2 6.6 0.89 8.7 0.4 2.4 1 1 2 3 3 3 0 Transposase protein 5_nucleotid PF05761.9 gi|57639978|ref|YP_182456.1| - 2.6 6.4 5.5 8.7 4.7 3.8 1.7 1 1 0 1 1 1 0 5' nucleotidase family DUF4349 PF14257.1 gi|57639978|ref|YP_182456.1| - 2.9 7.0 9.9 4 6.5 2.7 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4349) DUF3573 PF12097.3 gi|57639978|ref|YP_182456.1| - 3 6.3 5.9 9.8 4.6 1.8 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3573) THOC7 PF05615.8 gi|57639978|ref|YP_182456.1| - 3.6 7.8 15.2 0.4 10.9 0.6 3.0 1 1 2 3 3 3 0 Tho complex subunit 7 HalX PF08663.5 gi|57639978|ref|YP_182456.1| - 3.8 7.5 10.6 17 5.5 0.2 3.3 2 1 1 3 3 3 0 HalX domain DUF2408 PF10303.4 gi|57639978|ref|YP_182456.1| - 3.9 7.5 10.4 17 5.4 7.2 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF2408) DUF4407 PF14362.1 gi|57639978|ref|YP_182456.1| - 4.6 6.1 6.4 1.7 7.5 1.3 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF4407) SbcD_C PF12320.3 gi|57639978|ref|YP_182456.1| - 4.9 7.2 13.0 0.57 10.2 1.7 2.9 1 1 2 3 3 2 0 Type 5 capsule protein repressor C-terminal domain TMPIT PF07851.8 gi|57639978|ref|YP_182456.1| - 5 6.1 8.5 0.98 8.4 2.6 1.8 1 1 1 2 2 2 0 TMPIT-like protein DUF641 PF04859.7 gi|57639978|ref|YP_182456.1| - 5.6 6.7 8.1 4 7.1 1.6 2.3 1 1 1 2 2 2 0 Plant protein of unknown function (DUF641) TMF_TATA_bd PF12325.3 gi|57639978|ref|YP_182456.1| - 5.9 6.6 17.8 8.6 6.1 4.4 2.3 1 1 1 2 2 2 0 TATA element modulatory factor 1 TATA binding PRP1_N PF06424.7 gi|57639978|ref|YP_182456.1| - 7.2 6.9 10.8 3.3 8.0 2.9 2.1 1 1 1 2 2 2 0 PRP1 splicing factor, N-terminal Kinetocho_Slk19 PF12709.2 gi|57639978|ref|YP_182456.1| - 7.3 6.7 14.9 5.3 7.1 0.2 3.4 1 1 3 4 4 4 0 Central kinetochore-associated DUF4164 PF13747.1 gi|57639978|ref|YP_182456.1| - 7.4 6.7 12.8 7.6 6.7 5.4 2.6 1 1 1 2 2 2 0 Domain of unknown function (DUF4164) TSC22 PF01166.13 gi|57639978|ref|YP_182456.1| - 7.6 6.5 17.1 0.19 11.7 0.4 3.8 1 1 3 4 4 3 0 TSC-22/dip/bun family DUF2205 PF10224.4 gi|57639978|ref|YP_182456.1| - 8.2 6.0 15.4 8.8 5.9 5.1 2.3 1 1 1 2 2 2 0 Predicted coiled-coil protein (DUF2205) DUF4446 PF14584.1 gi|57639978|ref|YP_182456.1| - 9 6.1 8.2 14 5.4 1.8 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF4446) Latarcin PF10279.4 gi|57639978|ref|YP_182456.1| - 9.1 6.5 12.9 32 4.8 8.9 2.0 1 1 0 1 1 1 0 Latarcin precursor MSA-2c PF12238.3 gi|57639978|ref|YP_182456.1| - 9.9 5.7 8.0 3.7 7.1 1.7 2.1 1 1 1 2 2 2 0 Merozoite surface antigen 2c Arch_fla_DE PF04659.8 gi|57639979|ref|YP_182457.1| - 1.1e-36 124.6 1.3 2.6e-35 120.2 0.0 3.1 2 1 0 2 2 2 1 Archaeal flagella protein NPV_P10 PF05531.7 gi|57639979|ref|YP_182457.1| - 0.00036 20.7 14.7 0.15 12.3 1.2 4.6 2 1 2 4 4 3 2 Nucleopolyhedrovirus P10 protein Baculo_PEP_C PF04513.7 gi|57639979|ref|YP_182457.1| - 0.0054 16.5 4.9 0.11 12.3 0.3 2.8 1 1 1 2 2 2 2 Baculovirus polyhedron envelope protein, PEP, C terminus HSBP1 PF06825.7 gi|57639979|ref|YP_182457.1| - 0.0098 15.4 10.8 0.26 10.8 0.1 4.5 3 2 2 5 5 5 2 Heat shock factor binding protein 1 Reo_sigmaC PF04582.7 gi|57639979|ref|YP_182457.1| - 0.0098 15.1 0.3 0.017 14.3 0.2 1.4 1 0 0 1 1 1 1 Reovirus sigma C capsid protein Syntaxin-6_N PF09177.6 gi|57639979|ref|YP_182457.1| - 0.06 13.7 21.7 0.17 12.3 1.9 4.3 2 1 2 4 4 4 0 Syntaxin 6, N-terminal Occludin_ELL PF07303.8 gi|57639979|ref|YP_182457.1| - 0.14 12.8 0.4 0.14 12.8 0.3 3.9 2 1 2 4 4 3 0 Occludin homology domain PMC2NT PF08066.7 gi|57639979|ref|YP_182457.1| - 0.29 11.4 3.9 0.33 11.2 0.2 2.5 2 0 0 2 2 2 0 PMC2NT (NUC016) domain Translin PF01997.11 gi|57639979|ref|YP_182457.1| - 0.29 10.6 17.1 0.26 10.8 4.1 3.0 1 1 2 3 3 3 0 Translin family PilJ PF13675.1 gi|57639979|ref|YP_182457.1| - 0.31 11.3 3.3 1.4 9.2 0.7 2.8 1 1 2 3 3 3 0 Type IV pili methyl-accepting chemotaxis transducer N-term BLOC1_2 PF10046.4 gi|57639979|ref|YP_182457.1| - 0.36 10.9 21.5 0.24 11.5 5.1 4.1 2 1 2 4 4 4 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF4254 PF14063.1 gi|57639979|ref|YP_182457.1| - 0.39 10.3 9.2 0.84 9.2 3.3 2.8 2 0 0 2 2 2 0 Protein of unknown function (DUF4254) DUF3384 PF11864.3 gi|57639979|ref|YP_182457.1| - 0.41 9.0 2.8 0.65 8.3 2.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3384) FemAB PF02388.11 gi|57639979|ref|YP_182457.1| - 0.41 9.2 17.6 0.17 10.5 0.9 2.3 1 1 1 2 2 2 0 FemAB family DUF479 PF04336.7 gi|57639979|ref|YP_182457.1| - 0.49 10.5 4.7 5.6 7.1 0.0 3.8 4 1 0 4 4 3 0 Protein of unknown function, DUF479 Allexi_40kDa PF05549.6 gi|57639979|ref|YP_182457.1| - 0.59 9.3 11.2 3.5 6.8 1.0 2.4 1 1 1 2 2 2 0 Allexivirus 40kDa protein Sec34 PF04136.10 gi|57639979|ref|YP_182457.1| - 0.73 9.5 15.2 0.3 10.7 3.4 2.8 1 1 1 2 2 2 0 Sec34-like family Fib_alpha PF08702.5 gi|57639979|ref|YP_182457.1| - 1.2 9.2 14.7 9.8 6.2 3.3 3.4 2 1 1 3 3 3 0 Fibrinogen alpha/beta chain family AAA_13 PF13166.1 gi|57639979|ref|YP_182457.1| - 1.5 7.2 26.7 2.6 6.3 18.2 1.5 1 1 0 1 1 1 0 AAA domain COG5 PF10392.4 gi|57639979|ref|YP_182457.1| - 2.5 8.0 12.3 6.4 6.7 2.6 3.0 2 1 1 3 3 2 0 Golgi transport complex subunit 5 tRNA-synt_His PF13393.1 gi|57639979|ref|YP_182457.1| - 2.6 6.9 10.5 2.6 7.0 5.7 2.0 1 1 1 2 2 2 0 Histidyl-tRNA synthetase Nup54 PF13874.1 gi|57639979|ref|YP_182457.1| - 2.7 7.6 18.7 1.4 8.5 2.3 2.8 1 1 1 2 2 2 0 Nucleoporin complex subunit 54 Phage_GPO PF05929.6 gi|57639979|ref|YP_182457.1| - 2.7 7.1 21.7 5.8 6.0 1.1 2.5 1 1 0 2 2 2 0 Phage capsid scaffolding protein (GPO) serine peptidase AAA_11 PF13086.1 gi|57639979|ref|YP_182457.1| - 3.7 7.0 8.6 6.6 6.2 6.0 1.5 1 0 0 1 1 1 0 AAA domain GTPase_Cys_C PF12631.2 gi|57639979|ref|YP_182457.1| - 4 7.9 11.2 1.3 9.4 2.2 3.3 1 1 2 3 3 3 0 Catalytic cysteine-containing C-terminus of GTPase, MnmE AATF-Che1 PF13339.1 gi|57639979|ref|YP_182457.1| - 5.5 7.1 20.3 2.3 8.4 2.0 3.0 1 1 1 2 2 2 0 Apoptosis antagonizing transcription factor HisKA_3 PF07730.8 gi|57639979|ref|YP_182457.1| - 6 7.2 14.2 5.7 7.3 0.0 3.9 2 1 0 2 2 1 0 Histidine kinase TMF_DNA_bd PF12329.3 gi|57639979|ref|YP_182457.1| - 6.3 6.6 49.7 0.84 9.4 2.2 5.6 2 1 1 4 4 4 0 TATA element modulatory factor 1 DNA binding DUF948 PF06103.6 gi|57639979|ref|YP_182457.1| - 6.7 6.6 14.9 0.66 9.8 1.5 3.7 3 1 0 4 4 3 0 Bacterial protein of unknown function (DUF948) Plasmid_stabil PF05016.9 gi|57639979|ref|YP_182457.1| - 7.5 7.0 7.6 1.6 9.1 1.4 2.9 3 1 1 4 4 1 0 Plasmid stabilisation system protein COG2 PF06148.6 gi|57639979|ref|YP_182457.1| - 9.1 6.1 20.9 29 4.5 5.8 3.4 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 DUF4559 PF15112.1 gi|57639979|ref|YP_182457.1| - 9.4 5.2 17.2 15 4.6 11.3 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4559) Exonuc_VII_L PF02601.10 gi|57639979|ref|YP_182457.1| - 9.8 5.2 19.8 3.5e+02 0.1 13.8 2.3 1 1 0 1 1 1 0 Exonuclease VII, large subunit Baculo_p24 PF05073.7 gi|57639979|ref|YP_182457.1| - 10 5.6 11.1 5.3 6.5 1.9 2.4 1 1 1 2 2 2 0 Baculovirus P24 capsid protein Arch_flagellin PF01917.11 gi|57639980|ref|YP_182458.1| - 7.1e-11 42.0 2.1 1.7e-10 40.8 1.5 1.6 1 1 0 1 1 1 1 Archaebacterial flagellin Arch_flagellin PF01917.11 gi|57639981|ref|YP_182459.1| - 7.5e-14 51.7 1.8 5.1e-13 49.0 1.3 1.8 1 1 0 1 1 1 1 Archaebacterial flagellin CARDB PF07705.6 gi|57639981|ref|YP_182459.1| - 0.013 15.5 0.3 0.02 14.9 0.2 1.2 1 0 0 1 1 1 0 CARDB KaiC PF06745.8 gi|57639982|ref|YP_182460.1| - 1.3e-18 67.0 0.0 1.5e-18 66.7 0.0 1.0 1 0 0 1 1 1 1 KaiC NACHT PF05729.7 gi|57639982|ref|YP_182460.1| - 0.00017 21.2 0.1 0.00056 19.6 0.1 1.7 1 1 0 1 1 1 1 NACHT domain AAA_25 PF13481.1 gi|57639982|ref|YP_182460.1| - 0.00023 20.6 0.0 0.0061 15.9 0.0 2.1 2 0 0 2 2 2 1 AAA domain UPF0079 PF02367.12 gi|57639982|ref|YP_182460.1| - 0.00026 20.6 0.0 0.00039 20.0 0.0 1.3 1 0 0 1 1 1 1 Uncharacterised P-loop hydrolase UPF0079 DUF2348 PF09807.4 gi|57639982|ref|YP_182460.1| - 0.013 14.6 0.1 0.024 13.7 0.0 1.4 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2348) AAA_16 PF13191.1 gi|57639982|ref|YP_182460.1| - 0.028 14.4 0.1 0.059 13.3 0.0 1.5 2 0 0 2 2 2 0 AAA ATPase domain AAA_10 PF12846.2 gi|57639982|ref|YP_182460.1| - 0.038 13.4 0.3 0.058 12.8 0.2 1.5 1 1 0 1 1 1 0 AAA-like domain AAA_22 PF13401.1 gi|57639982|ref|YP_182460.1| - 0.056 13.5 0.0 0.083 13.0 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|57639982|ref|YP_182460.1| - 0.093 12.2 0.1 0.48 9.9 0.0 2.1 2 0 0 2 2 2 0 P-loop containing region of AAA domain FtsK_SpoIIIE PF01580.13 gi|57639982|ref|YP_182460.1| - 0.15 11.4 0.0 0.27 10.7 0.0 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family T2SE PF00437.15 gi|57639983|ref|YP_182461.1| - 1.7e-48 164.8 0.0 2.6e-48 164.2 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.1 gi|57639983|ref|YP_182461.1| - 0.00014 21.2 0.2 0.00035 20.0 0.0 1.7 2 0 0 2 2 2 1 P-loop containing region of AAA domain ABC_tran PF00005.22 gi|57639983|ref|YP_182461.1| - 0.0054 17.0 0.0 0.027 14.7 0.0 2.1 2 0 0 2 2 2 1 ABC transporter MobB PF03205.9 gi|57639983|ref|YP_182461.1| - 0.026 14.2 0.0 0.055 13.1 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B CheR_N PF03705.10 gi|57639983|ref|YP_182461.1| - 0.033 13.5 2.8 0.1 12.0 0.1 2.8 3 0 0 3 3 3 0 CheR methyltransferase, all-alpha domain AAA_23 PF13476.1 gi|57639983|ref|YP_182461.1| - 0.034 14.4 0.9 0.13 12.5 0.0 2.1 2 0 0 2 2 2 0 AAA domain Miro PF08477.8 gi|57639983|ref|YP_182461.1| - 0.056 13.9 0.0 0.13 12.7 0.0 1.7 1 0 0 1 1 1 0 Miro-like protein Arch_ATPase PF01637.13 gi|57639983|ref|YP_182461.1| - 0.057 13.1 0.7 1.5 8.4 0.0 2.2 2 0 0 2 2 2 0 Archaeal ATPase FtsK_SpoIIIE PF01580.13 gi|57639983|ref|YP_182461.1| - 0.079 12.4 0.0 0.21 11.0 0.0 1.6 1 0 0 1 1 1 0 FtsK/SpoIIIE family Dynamin_N PF00350.18 gi|57639983|ref|YP_182461.1| - 0.11 12.3 0.0 0.21 11.3 0.0 1.5 1 0 0 1 1 1 0 Dynamin family MMR_HSR1 PF01926.18 gi|57639983|ref|YP_182461.1| - 0.16 11.8 0.0 0.32 10.9 0.0 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_16 PF13191.1 gi|57639983|ref|YP_182461.1| - 0.18 11.7 0.0 0.73 9.7 0.0 1.9 2 0 0 2 2 2 0 AAA ATPase domain T2SF PF00482.18 gi|57639984|ref|YP_182462.1| - 3e-16 59.4 2.0 7.3e-10 38.8 0.0 3.9 5 0 0 5 5 5 2 Type II secretion system (T2SS), protein F CARDB PF07705.6 gi|57639985|ref|YP_182463.1| - 4e-09 36.4 8.4 0.00069 19.6 0.0 4.5 4 0 0 4 4 4 2 CARDB Transglut_C PF00927.17 gi|57639985|ref|YP_182463.1| - 5.8e-09 35.9 3.4 0.00085 19.3 0.0 4.2 3 1 0 3 3 3 2 Transglutaminase family, C-terminal ig like domain Trs65 PF12735.2 gi|57639985|ref|YP_182463.1| - 0.00031 20.1 8.5 0.003 16.9 1.1 2.6 1 1 1 2 2 2 2 TRAPP trafficking subunit Trs65 TRAP_beta PF05753.9 gi|57639985|ref|YP_182463.1| - 0.018 14.2 1.6 0.38 9.8 0.0 3.5 3 1 1 4 4 4 0 Translocon-associated protein beta (TRAPB) DUF4236 PF14020.1 gi|57639985|ref|YP_182463.1| - 0.049 13.7 0.3 1.2 9.2 0.1 3.2 2 1 1 3 3 3 0 Protein of unknown function (DUF4236) H_lectin PF09458.5 gi|57639985|ref|YP_182463.1| - 0.057 13.0 3.0 1.4 8.5 0.0 2.8 2 0 0 2 2 2 0 H-type lectin domain PCMT PF01135.14 gi|57639986|ref|YP_182464.1| - 3e-58 196.8 0.0 3.6e-58 196.5 0.0 1.0 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_31 PF13847.1 gi|57639986|ref|YP_182464.1| - 6.4e-10 38.8 0.0 8.2e-10 38.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|57639986|ref|YP_182464.1| - 2.7e-08 34.3 0.0 3.9e-08 33.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|57639986|ref|YP_182464.1| - 7e-08 32.5 0.0 1.1e-07 31.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|57639986|ref|YP_182464.1| - 1.3e-06 28.1 0.0 1.8e-06 27.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|57639986|ref|YP_182464.1| - 3.1e-06 26.6 0.0 4.8e-06 26.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain RrnaAD PF00398.15 gi|57639986|ref|YP_182464.1| - 8.7e-06 24.9 0.0 1e-05 24.6 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_4 PF02390.12 gi|57639986|ref|YP_182464.1| - 0.00077 18.5 0.0 0.00093 18.2 0.0 1.2 1 0 0 1 1 1 1 Putative methyltransferase CMAS PF02353.15 gi|57639986|ref|YP_182464.1| - 0.00096 18.3 0.0 0.0014 17.8 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase GCD14 PF08704.5 gi|57639986|ref|YP_182464.1| - 0.0012 18.3 0.0 0.0015 18.0 0.0 1.1 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit PrmA PF06325.8 gi|57639986|ref|YP_182464.1| - 0.0028 16.8 0.0 0.0034 16.5 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Fibrillarin PF01269.12 gi|57639986|ref|YP_182464.1| - 0.0028 16.5 0.0 0.0037 16.2 0.0 1.1 1 0 0 1 1 1 1 Fibrillarin Met_10 PF02475.11 gi|57639986|ref|YP_182464.1| - 0.003 17.1 0.0 0.0041 16.7 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_11 PF08241.7 gi|57639986|ref|YP_182464.1| - 0.0033 17.8 0.0 0.0049 17.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_3 PF01596.12 gi|57639986|ref|YP_182464.1| - 0.0076 15.3 0.0 0.011 14.8 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_25 PF13649.1 gi|57639986|ref|YP_182464.1| - 0.013 15.8 0.0 0.021 15.1 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Ubie_methyltran PF01209.13 gi|57639986|ref|YP_182464.1| - 0.032 13.3 0.0 0.045 12.8 0.0 1.2 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family UPF0020 PF01170.13 gi|57639986|ref|YP_182464.1| - 0.056 13.0 0.0 0.084 12.4 0.0 1.3 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 tRNA_U5-meth_tr PF05958.6 gi|57639986|ref|YP_182464.1| - 0.086 11.5 0.0 0.1 11.2 0.0 1.1 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase HAD PF12710.2 gi|57639987|ref|YP_182465.1| - 4.7e-18 66.0 0.1 7.3e-18 65.4 0.0 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|57639987|ref|YP_182465.1| - 2.7e-11 44.2 0.0 3.9e-09 37.2 0.0 2.1 1 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|57639987|ref|YP_182465.1| - 2.2e-08 34.4 0.0 4.9e-08 33.4 0.0 1.6 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|57639987|ref|YP_182465.1| - 5e-08 32.8 0.0 0.0002 20.9 0.0 2.8 2 1 0 2 2 2 2 haloacid dehalogenase-like hydrolase AAA_17 PF13207.1 gi|57639987|ref|YP_182465.1| - 0.074 13.8 0.4 0.68 10.7 0.0 2.4 2 1 0 2 2 2 0 AAA domain Hydrolase_6 PF13344.1 gi|57639987|ref|YP_182465.1| - 0.12 12.2 0.7 0.39 10.6 0.5 1.9 1 1 0 1 1 1 0 Haloacid dehalogenase-like hydrolase Arc_PepC PF06819.6 gi|57639988|ref|YP_182466.1| - 5.3e-38 129.3 3.3 9.2e-38 128.5 2.3 1.4 1 0 0 1 1 1 1 Archaeal Peptidase A24 C-terminal Domain TSC22 PF01166.13 gi|57639988|ref|YP_182466.1| - 0.068 13.1 3.1 0.22 11.5 0.1 2.3 2 0 0 2 2 2 0 TSC-22/dip/bun family Class_IIIsignal PF04021.7 gi|57639989|ref|YP_182467.1| - 4.9e-09 35.5 1.5 6.5e-09 35.2 1.0 1.2 1 0 0 1 1 1 1 Class III signal peptide UPF0118 PF01594.11 gi|57639989|ref|YP_182467.1| - 0.085 11.8 0.0 0.085 11.8 0.0 1.0 1 0 0 1 1 1 0 Domain of unknown function DUF20 Arch_flagellin PF01917.11 gi|57639989|ref|YP_182467.1| - 0.092 12.3 0.2 0.092 12.3 0.1 1.0 1 0 0 1 1 1 0 Archaebacterial flagellin ASCH PF04266.9 gi|57639990|ref|YP_182468.1| - 4.5e-15 55.9 0.1 5.3e-15 55.7 0.0 1.1 1 0 0 1 1 1 1 ASCH domain HSDR_N PF04313.9 gi|57639990|ref|YP_182468.1| - 0.044 13.5 0.1 0.044 13.5 0.1 1.2 1 0 0 1 1 1 0 Type I restriction enzyme R protein N terminus (HSDR_N) DUF3850 PF12961.2 gi|57639990|ref|YP_182468.1| - 0.052 13.5 0.4 0.11 12.4 0.2 1.7 1 1 0 1 1 1 0 Domain of Unknown Function with PDB structure (DUF3850) ASCH PF04266.9 gi|57639991|ref|YP_182469.1| - 5.4e-18 65.3 0.0 1.1e-17 64.3 0.0 1.5 2 0 0 2 2 2 1 ASCH domain RHH_1 PF01402.16 gi|57639991|ref|YP_182469.1| - 0.062 13.2 1.2 2.1 8.3 0.5 2.8 2 0 0 2 2 2 0 Ribbon-helix-helix protein, copG family AsnC_trans_reg PF01037.16 gi|57639992|ref|YP_182470.1| - 0.0093 15.6 0.0 0.014 15.0 0.0 1.3 1 0 0 1 1 1 1 AsnC family HAD_2 PF13419.1 gi|57639993|ref|YP_182471.1| - 9.5e-33 113.8 0.0 1.2e-32 113.5 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|57639993|ref|YP_182471.1| - 1.3e-14 55.0 0.1 1.8e-13 51.4 0.0 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|57639993|ref|YP_182471.1| - 1e-11 44.3 0.0 3.9e-11 42.5 0.0 1.8 2 0 0 2 2 2 1 HAD-hyrolase-like HAD PF12710.2 gi|57639993|ref|YP_182471.1| - 2.5e-07 31.0 0.0 3.5e-07 30.5 0.0 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Put_Phosphatase PF06888.7 gi|57639993|ref|YP_182471.1| - 0.00015 21.0 0.0 0.0056 15.8 0.0 2.7 2 1 1 3 3 3 1 Putative Phosphatase CDP-OH_P_transf PF01066.16 gi|57639994|ref|YP_182472.1| - 1e-17 64.2 8.9 1.8e-17 63.5 6.1 1.5 1 1 0 1 1 1 1 CDP-alcohol phosphatidyltransferase MtrC PF04211.8 gi|57639994|ref|YP_182472.1| - 0.078 12.0 5.8 2.8 6.9 1.2 2.8 2 1 1 3 3 3 0 Tetrahydromethanopterin S-methyltransferase, subunit C Trm56 PF01994.11 gi|57639995|ref|YP_182473.1| - 7e-54 180.7 0.0 9.7e-54 180.2 0.0 1.2 1 0 0 1 1 1 1 tRNA ribose 2'-O-methyltransferase, aTrm56 SpoU_methylase PF00588.14 gi|57639995|ref|YP_182473.1| - 0.003 17.4 0.0 0.0042 16.9 0.0 1.2 1 0 0 1 1 1 1 SpoU rRNA Methylase family SPOUT_MTase_2 PF14419.1 gi|57639995|ref|YP_182473.1| - 0.0034 16.5 0.1 0.008 15.3 0.0 1.6 2 0 0 2 2 2 1 AF2226-like SPOUT RNA Methylase fused to THUMP Transglut_core PF01841.14 gi|57639996|ref|YP_182474.1| - 2.6e-07 30.8 0.0 4.9e-07 29.9 0.0 1.5 1 0 0 1 1 1 1 Transglutaminase-like superfamily Arrestin_C PF02752.17 gi|57639996|ref|YP_182474.1| - 0.028 14.5 0.3 0.35 10.9 0.0 2.6 3 0 0 3 3 3 0 Arrestin (or S-antigen), C-terminal domain DUF11 PF01345.13 gi|57639996|ref|YP_182474.1| - 0.045 13.7 1.5 1.3 9.1 0.2 2.4 2 0 0 2 2 2 0 Domain of unknown function DUF11 Cohesin PF00963.13 gi|57639996|ref|YP_182474.1| - 0.15 11.9 2.0 0.29 10.9 0.3 2.1 2 0 0 2 2 2 0 Cohesin domain SAM_adeno_trans PF01887.11 gi|57639997|ref|YP_182475.1| - 1.4e-82 276.6 0.0 1.5e-82 276.5 0.0 1.0 1 0 0 1 1 1 1 S-adenosyl-l-methionine hydroxide adenosyltransferase TOBE PF03459.12 gi|57639997|ref|YP_182475.1| - 0.04 14.0 0.1 0.12 12.5 0.0 1.8 1 0 0 1 1 1 0 TOBE domain NTP_transf_2 PF01909.18 gi|57639998|ref|YP_182476.1| - 7.3e-11 42.2 0.0 1.7e-10 41.0 0.0 1.6 1 0 0 1 1 1 1 Nucleotidyltransferase domain HTH_5 PF01022.15 gi|57639998|ref|YP_182476.1| - 3.9e-05 23.2 0.1 6.7e-05 22.4 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|57639998|ref|YP_182476.1| - 0.00035 19.8 0.1 0.00071 18.9 0.1 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|57639998|ref|YP_182476.1| - 0.0032 17.1 2.2 0.0042 16.7 0.1 2.0 2 1 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.1 gi|57639998|ref|YP_182476.1| - 0.0055 17.0 0.0 0.012 15.9 0.0 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_Crp_2 PF13545.1 gi|57639998|ref|YP_182476.1| - 0.01 15.5 0.1 0.025 14.3 0.0 1.7 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain HTH_IclR PF09339.5 gi|57639998|ref|YP_182476.1| - 0.031 13.8 0.0 0.056 13.0 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|57639998|ref|YP_182476.1| - 0.045 13.4 0.0 0.08 12.6 0.0 1.4 1 0 0 1 1 1 0 MarR family DUF977 PF06163.6 gi|57639998|ref|YP_182476.1| - 0.063 13.0 0.1 0.1 12.3 0.0 1.3 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF977) FaeA PF04703.7 gi|57639998|ref|YP_182476.1| - 0.065 13.4 0.0 0.12 12.5 0.0 1.4 1 0 0 1 1 1 0 FaeA-like protein HemN_C PF06969.11 gi|57639998|ref|YP_182476.1| - 0.069 13.2 0.5 0.2 11.7 0.3 1.7 1 0 0 1 1 1 0 HemN C-terminal domain HTH_Mga PF08280.6 gi|57639998|ref|YP_182476.1| - 0.095 12.4 0.1 0.26 11.0 0.0 1.7 2 0 0 2 2 2 0 M protein trans-acting positive regulator (MGA) HTH domain DUF294 PF03445.8 gi|57639998|ref|YP_182476.1| - 0.11 12.0 0.0 0.17 11.5 0.0 1.2 1 0 0 1 1 1 0 Putative nucleotidyltransferase DUF294 Adenyl_cycl_N PF12633.2 gi|57639998|ref|YP_182476.1| - 0.13 11.7 0.0 0.17 11.3 0.0 1.2 1 0 0 1 1 1 0 Adenylate cyclase NT domain HEPN PF05168.9 gi|57639999|ref|YP_182477.1| - 2.1e-23 82.4 0.0 2.3e-23 82.2 0.0 1.0 1 0 0 1 1 1 1 HEPN domain PIN PF01850.16 gi|57640001|ref|YP_182479.1| - 9.4e-24 84.0 0.1 1.1e-23 83.8 0.1 1.1 1 0 0 1 1 1 1 PIN domain XPC-binding PF09280.6 gi|57640001|ref|YP_182479.1| - 0.053 12.9 0.0 0.08 12.4 0.0 1.3 1 0 0 1 1 1 0 XPC-binding domain CTP_transf_2 PF01467.21 gi|57640002|ref|YP_182480.1| - 1.9e-21 76.7 0.1 4.6e-21 75.4 0.0 1.6 2 0 0 2 2 2 1 Cytidylyltransferase MARVEL PF01284.18 gi|57640003|ref|YP_182481.1| - 0.0091 15.8 4.9 0.0091 15.8 3.4 1.6 1 1 0 1 1 1 1 Membrane-associating domain DUF4131 PF13567.1 gi|57640003|ref|YP_182481.1| - 0.077 12.4 0.7 0.092 12.1 0.5 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) Herpes_UL20 PF04544.7 gi|57640003|ref|YP_182481.1| - 0.12 12.2 7.7 1.4 8.7 5.3 2.0 1 1 0 1 1 1 0 Herpesvirus egress protein UL20 DUF204 PF02659.10 gi|57640003|ref|YP_182481.1| - 0.2 11.7 4.1 0.67 10.1 2.9 1.9 1 1 0 1 1 1 0 Domain of unknown function DUF PDDEXK_1 PF12705.2 gi|57640004|ref|YP_182482.1| - 1.1e-05 25.0 0.7 3.1e-05 23.4 0.1 1.8 1 1 1 2 2 2 1 PD-(D/E)XK nuclease superfamily Cas_Cas4 PF01930.12 gi|57640004|ref|YP_182482.1| - 2.1e-05 24.5 0.2 0.0051 16.7 0.0 2.3 2 1 0 2 2 2 2 Domain of unknown function DUF83 Ndufs5 PF10200.4 gi|57640004|ref|YP_182482.1| - 0.074 13.0 0.0 0.14 12.1 0.0 1.4 1 0 0 1 1 1 0 NADH:ubiquinone oxidoreductase, NDUFS5-15kDa Met_10 PF02475.11 gi|57640006|ref|YP_182484.1| - 3.9e-66 222.4 0.1 4.8e-66 222.1 0.1 1.1 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_18 PF12847.2 gi|57640006|ref|YP_182484.1| - 0.00013 22.4 0.0 0.00023 21.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|57640006|ref|YP_182484.1| - 0.0028 17.0 0.0 0.0046 16.3 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_26 PF13659.1 gi|57640006|ref|YP_182484.1| - 0.0093 15.9 0.0 0.018 15.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|57640006|ref|YP_182484.1| - 0.017 14.1 0.0 0.024 13.6 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase DNA_methylase PF00145.12 gi|57640006|ref|YP_182484.1| - 0.018 14.2 0.0 0.025 13.7 0.0 1.2 1 0 0 1 1 1 0 C-5 cytosine-specific DNA methylase PrmA PF06325.8 gi|57640006|ref|YP_182484.1| - 0.019 14.0 0.0 0.027 13.5 0.0 1.1 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_15 PF09445.5 gi|57640006|ref|YP_182484.1| - 0.02 14.4 0.0 0.03 13.8 0.0 1.3 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase AFOR_C PF01314.13 gi|57640007|ref|YP_182485.1| - 3.9e-129 430.6 0.2 4.6e-129 430.4 0.2 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.10 gi|57640007|ref|YP_182485.1| - 2e-69 233.0 0.1 2.8e-69 232.5 0.1 1.2 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain EcoEI_R_C PF08463.5 gi|57640008|ref|YP_182486.1| - 0.015 15.1 0.7 4 7.2 0.1 2.7 2 1 1 3 3 3 0 EcoEI R protein C-terminal Laminin_G_3 PF13385.1 gi|57640009|ref|YP_182487.1| - 1.5e-13 51.2 2.9 4.1e-13 49.8 2.0 1.7 1 0 0 1 1 1 1 Concanavalin A-like lectin/glucanases superfamily Y_Y_Y PF07495.8 gi|57640010|ref|YP_182488.1| - 0.0067 16.1 0.2 0.032 13.9 0.0 2.3 2 0 0 2 2 2 1 Y_Y_Y domain FG-GAP PF01839.18 gi|57640010|ref|YP_182488.1| - 0.0094 15.6 3.0 1.2 8.9 0.0 2.8 2 0 0 2 2 2 2 FG-GAP repeat DUF1967 PF09269.6 gi|57640010|ref|YP_182488.1| - 0.055 13.1 0.4 0.16 11.6 0.1 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF1967) DUF3110 PF11360.3 gi|57640010|ref|YP_182488.1| - 0.096 12.5 0.2 0.23 11.2 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3110) Peptidase_S8 PF00082.17 gi|57640011|ref|YP_182489.1| - 6.4e-59 199.4 0.2 9e-59 198.9 0.1 1.2 1 0 0 1 1 1 1 Subtilase family COX4_pro PF03626.9 gi|57640012|ref|YP_182490.1| - 0.16 12.1 5.3 0.2 11.8 3.7 1.1 1 0 0 1 1 1 0 Prokaryotic Cytochrome C oxidase subunit IV vMSA PF00695.14 gi|57640012|ref|YP_182490.1| - 0.24 10.5 4.3 0.22 10.6 3.0 1.1 1 0 0 1 1 1 0 Major surface antigen from hepadnavirus Phage_holin_4 PF05105.7 gi|57640014|ref|YP_182492.1| - 0.37 10.4 5.7 0.17 11.5 0.3 2.2 2 0 0 2 2 2 0 Holin family Herpes_HEPA PF03324.9 gi|57640015|ref|YP_182493.1| - 2.8 8.0 6.2 8.2 6.5 0.4 3.2 2 1 1 3 3 3 0 Herpesvirus DNA helicase/primase complex associated protein DUF423 PF04241.10 gi|57640015|ref|YP_182493.1| - 7.6 6.5 14.5 0.74 9.7 2.8 2.9 2 1 1 3 3 3 0 Protein of unknown function (DUF423) DUF1049 PF06305.6 gi|57640017|ref|YP_182495.1| - 0.036 13.5 0.0 0.041 13.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1049) DUF1634 PF07843.6 gi|57640018|ref|YP_182496.1| - 2 8.1 6.0 4.1 7.0 4.2 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF1634) Pex24p PF06398.6 gi|57640018|ref|YP_182496.1| - 3.3 6.3 5.4 3.8 6.2 3.7 1.4 1 0 0 1 1 1 0 Integral peroxisomal membrane peroxin Spc24 PF08286.6 gi|57640019|ref|YP_182497.1| - 0.038 13.6 0.2 0.038 13.6 0.1 1.0 1 0 0 1 1 1 0 Spc24 subunit of Ndc80 vATP-synt_E PF01991.13 gi|57640019|ref|YP_182497.1| - 0.052 12.8 1.5 0.055 12.7 1.0 1.0 1 0 0 1 1 1 0 ATP synthase (E/31 kDa) subunit Prefoldin PF02996.12 gi|57640019|ref|YP_182497.1| - 0.06 12.9 0.6 0.074 12.7 0.4 1.0 1 0 0 1 1 1 0 Prefoldin subunit Cep57_MT_bd PF06657.8 gi|57640019|ref|YP_182497.1| - 0.092 12.7 0.1 0.11 12.4 0.1 1.3 1 0 0 1 1 1 0 Centrosome microtubule-binding domain of Cep57 DUF1049 PF06305.6 gi|57640019|ref|YP_182497.1| - 0.62 9.5 2.3 0.92 9.0 1.6 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1049) HTH_5 PF01022.15 gi|57640021|ref|YP_182499.1| - 2.7e-06 26.9 0.3 4.7e-06 26.1 0.2 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|57640021|ref|YP_182499.1| - 2e-05 24.2 0.2 6.3e-05 22.6 0.1 1.8 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|57640021|ref|YP_182499.1| - 7.8e-05 22.3 0.2 0.00018 21.1 0.1 1.6 1 0 0 1 1 1 1 MarR family HTH_38 PF13936.1 gi|57640021|ref|YP_182499.1| - 0.0061 16.0 0.6 0.016 14.7 0.2 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_34 PF13601.1 gi|57640021|ref|YP_182499.1| - 0.0095 15.9 1.4 0.037 14.0 0.0 2.2 2 0 0 2 2 2 1 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|57640021|ref|YP_182499.1| - 0.018 14.6 0.1 0.046 13.3 0.0 1.6 2 0 0 2 2 2 0 MarR family HrcA_DNA-bdg PF03444.10 gi|57640021|ref|YP_182499.1| - 0.053 12.9 0.0 0.11 11.9 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding TFIIE_alpha PF02002.12 gi|57640021|ref|YP_182499.1| - 0.062 12.8 1.6 0.092 12.2 0.1 2.1 2 1 0 2 2 2 0 TFIIE alpha subunit Phage_terminase PF10668.4 gi|57640021|ref|YP_182499.1| - 0.062 13.0 0.4 0.2 11.4 0.0 1.9 2 0 0 2 2 2 0 Phage terminase small subunit KorB PF08535.5 gi|57640021|ref|YP_182499.1| - 0.068 13.3 0.4 0.51 10.5 0.0 2.2 2 1 0 2 2 2 0 KorB domain HTH_24 PF13412.1 gi|57640021|ref|YP_182499.1| - 0.098 12.0 0.1 0.19 11.1 0.1 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_11 PF08279.7 gi|57640021|ref|YP_182499.1| - 0.18 11.5 0.9 0.25 11.0 0.1 1.6 2 0 0 2 2 2 0 HTH domain AAA_22 PF13401.1 gi|57640022|ref|YP_182500.1| - 0.00031 20.8 0.0 0.00066 19.8 0.0 1.5 1 0 0 1 1 1 1 AAA domain FtsK_SpoIIIE PF01580.13 gi|57640022|ref|YP_182500.1| - 0.0005 19.5 0.5 0.0015 18.0 0.0 2.0 2 2 0 2 2 2 1 FtsK/SpoIIIE family AAA_10 PF12846.2 gi|57640022|ref|YP_182500.1| - 0.00075 19.0 0.0 0.0037 16.7 0.0 2.2 1 1 0 1 1 1 1 AAA-like domain DUF87 PF01935.12 gi|57640022|ref|YP_182500.1| - 0.00081 19.2 0.0 0.073 12.8 0.0 2.3 2 0 0 2 2 2 1 Domain of unknown function DUF87 AAA_18 PF13238.1 gi|57640022|ref|YP_182500.1| - 0.002 18.4 0.0 0.025 14.8 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|57640022|ref|YP_182500.1| - 0.0034 18.2 0.1 0.028 15.2 0.0 2.5 2 2 1 3 3 3 1 AAA domain T2SE PF00437.15 gi|57640022|ref|YP_182500.1| - 0.018 13.9 0.0 0.028 13.3 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein PduV-EutP PF10662.4 gi|57640022|ref|YP_182500.1| - 0.019 14.4 0.1 0.046 13.2 0.0 1.6 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation ABC_tran PF00005.22 gi|57640022|ref|YP_182500.1| - 0.022 15.0 0.0 0.047 13.9 0.0 1.5 1 0 0 1 1 1 0 ABC transporter ATP_bind_1 PF03029.12 gi|57640022|ref|YP_182500.1| - 0.039 13.4 0.0 0.085 12.3 0.0 1.5 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein Zeta_toxin PF06414.7 gi|57640022|ref|YP_182500.1| - 0.043 12.9 0.0 0.088 11.8 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin Viral_helicase1 PF01443.13 gi|57640022|ref|YP_182500.1| - 0.053 13.0 0.0 0.09 12.2 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase NACHT PF05729.7 gi|57640022|ref|YP_182500.1| - 0.056 13.0 0.1 0.14 11.7 0.1 1.6 1 0 0 1 1 1 0 NACHT domain TrwB_AAD_bind PF10412.4 gi|57640022|ref|YP_182500.1| - 0.077 11.6 0.0 0.14 10.7 0.0 1.3 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain DUF258 PF03193.11 gi|57640022|ref|YP_182500.1| - 0.11 11.7 0.0 0.21 10.7 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_24 PF13479.1 gi|57640022|ref|YP_182500.1| - 0.11 12.0 0.0 0.25 10.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain Sigma54_activat PF00158.21 gi|57640022|ref|YP_182500.1| - 0.13 11.7 0.0 0.22 11.0 0.0 1.3 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_29 PF13555.1 gi|57640022|ref|YP_182500.1| - 0.13 11.8 0.0 0.25 10.8 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|57640022|ref|YP_182500.1| - 0.15 12.0 0.0 0.21 11.5 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain Mg_chelatase PF01078.16 gi|57640022|ref|YP_182500.1| - 0.19 10.8 0.0 0.31 10.1 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_23 PF13476.1 gi|57640022|ref|YP_182500.1| - 0.36 11.1 3.4 1.6 9.0 2.3 2.0 1 1 0 1 1 1 0 AAA domain GAS PF13851.1 gi|57640023|ref|YP_182501.1| - 0.00032 19.9 14.6 0.00032 19.9 10.1 2.6 3 0 0 3 3 3 1 Growth-arrest specific micro-tubule binding DUF4201 PF13870.1 gi|57640023|ref|YP_182501.1| - 0.0031 16.9 14.7 0.0031 16.9 10.2 3.0 2 2 0 2 2 1 1 Domain of unknown function (DUF4201) gpW PF02831.10 gi|57640023|ref|YP_182501.1| - 0.0057 16.1 1.2 11 5.7 0.0 3.6 3 1 0 3 3 3 0 gpW ATG16 PF08614.6 gi|57640023|ref|YP_182501.1| - 0.011 15.5 11.8 0.011 15.5 8.2 2.2 3 0 0 3 3 3 0 Autophagy protein 16 (ATG16) DUF3287 PF11690.3 gi|57640023|ref|YP_182501.1| - 0.021 14.8 7.8 0.75 9.8 0.2 2.8 1 1 1 2 2 2 0 Protein of unknown function (DUF3287) V-set_CD47 PF08204.6 gi|57640023|ref|YP_182501.1| - 0.081 12.6 1.3 8.8 6.1 0.0 2.5 1 1 1 2 2 2 0 CD47 immunoglobulin-like domain DivIC PF04977.10 gi|57640023|ref|YP_182501.1| - 0.15 11.5 31.7 0.032 13.6 2.7 4.4 3 2 2 5 5 5 0 Septum formation initiator HR1 PF02185.11 gi|57640023|ref|YP_182501.1| - 0.16 11.7 27.5 0.13 12.0 4.0 4.0 4 0 0 4 4 4 0 Hr1 repeat Macoilin PF09726.4 gi|57640023|ref|YP_182501.1| - 0.25 9.6 15.8 0.0046 15.3 6.0 1.6 2 0 0 2 2 2 0 Transmembrane protein Bcr-Abl_Oligo PF09036.5 gi|57640023|ref|YP_182501.1| - 0.43 10.5 5.3 5.1 7.1 0.3 2.6 1 1 1 2 2 2 0 Bcr-Abl oncoprotein oligomerisation domain DUF4187 PF13821.1 gi|57640023|ref|YP_182501.1| - 0.58 9.7 2.8 0.92 9.1 0.7 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4187) TMF_TATA_bd PF12325.3 gi|57640023|ref|YP_182501.1| - 0.98 9.1 26.1 6.3 6.5 12.5 3.3 2 1 0 2 2 2 0 TATA element modulatory factor 1 TATA binding DUF2968 PF11180.3 gi|57640023|ref|YP_182501.1| - 0.99 8.7 20.1 2 7.7 13.7 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF2968) ABC_tran PF00005.22 gi|57640023|ref|YP_182501.1| - 1.1 9.5 4.6 0.69 10.2 1.1 2.2 2 0 0 2 2 2 0 ABC transporter IncA PF04156.9 gi|57640023|ref|YP_182501.1| - 3.1 7.3 30.3 0.017 14.7 13.0 2.4 3 0 0 3 3 3 0 IncA protein Cortex-I_coil PF09304.5 gi|57640023|ref|YP_182501.1| - 3.3 7.7 28.6 0.11 12.4 12.1 3.4 3 1 0 3 3 3 0 Cortexillin I, coiled coil Cob_adeno_trans PF01923.13 gi|57640023|ref|YP_182501.1| - 3.4 7.4 7.7 1.4 8.7 3.0 1.9 2 0 0 2 2 2 0 Cobalamin adenosyltransferase ADIP PF11559.3 gi|57640023|ref|YP_182501.1| - 4 7.3 24.9 19 5.1 12.9 2.6 2 1 0 2 2 2 0 Afadin- and alpha -actinin-Binding DUF489 PF04356.7 gi|57640023|ref|YP_182501.1| - 4.2 6.9 9.0 3.2 7.3 1.1 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF489) Tbf5 PF06331.7 gi|57640023|ref|YP_182501.1| - 5 6.9 10.0 3.3 7.5 0.2 3.3 4 0 0 4 4 4 0 Transcription factor TFIIH complex subunit Tfb5 DUF2203 PF09969.4 gi|57640023|ref|YP_182501.1| - 5.5 7.2 12.7 0.62 10.2 4.9 2.2 3 0 0 3 3 3 0 Uncharacterized conserved protein (DUF2203) DUF2997 PF11211.3 gi|57640023|ref|YP_182501.1| - 8.2 5.8 9.2 1.3 8.4 1.0 3.0 2 1 1 3 3 3 0 Protein of unknown function (DUF2997) ACT_5 PF13710.1 gi|57640024|ref|YP_182502.1| - 0.0021 17.8 0.0 0.0035 17.1 0.0 1.4 1 0 0 1 1 1 1 ACT domain S_layer_C PF05124.7 gi|57640025|ref|YP_182503.1| - 7.8e-06 25.6 0.7 4.6e-05 23.1 0.5 2.0 1 1 0 1 1 1 1 S-layer like family, C-terminal region DUF1297 PF06973.7 gi|57640026|ref|YP_182504.1| - 0.03 13.6 0.0 0.06 12.6 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF1297) FixQ PF05545.6 gi|57640027|ref|YP_182505.1| - 0.054 13.1 0.7 0.11 12.2 0.5 1.5 1 0 0 1 1 1 0 Cbb3-type cytochrome oxidase component FixQ DUF3522 PF12036.3 gi|57640027|ref|YP_182505.1| - 0.091 12.5 0.4 0.11 12.2 0.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3522) DUF4396 PF14342.1 gi|57640028|ref|YP_182506.1| - 0.11 12.5 2.4 0.12 12.4 1.7 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4396) Antitoxin-MazE PF04014.13 gi|57640029|ref|YP_182507.1| - 1e-10 41.0 0.5 7.9e-07 28.6 0.1 2.3 2 0 0 2 2 2 2 Antidote-toxin recognition MazE MraZ PF02381.13 gi|57640029|ref|YP_182507.1| - 0.0031 17.2 0.0 0.27 11.0 0.0 2.2 2 0 0 2 2 2 1 MraZ protein UFD1 PF03152.9 gi|57640029|ref|YP_182507.1| - 0.0075 15.4 0.0 0.15 11.2 0.0 2.0 2 0 0 2 2 2 1 Ubiquitin fusion degradation protein UFD1 CDC48_N PF02359.13 gi|57640029|ref|YP_182507.1| - 0.041 13.8 0.2 0.54 10.2 0.0 2.1 2 0 0 2 2 2 0 Cell division protein 48 (CDC48), N-terminal domain TOBE PF03459.12 gi|57640029|ref|YP_182507.1| - 0.081 13.0 0.0 0.65 10.1 0.0 2.1 2 0 0 2 2 2 0 TOBE domain MCM PF00493.18 gi|57640031|ref|YP_182509.1| - 1.2e-70 237.9 0.0 1.8e-70 237.3 0.0 1.2 1 0 0 1 1 1 1 MCM2/3/5 family MCM_N PF14551.1 gi|57640031|ref|YP_182509.1| - 1.1e-19 71.0 0.3 8.2e-19 68.2 0.0 2.6 3 0 0 3 3 3 1 MCM N-terminal domain Mg_chelatase PF01078.16 gi|57640031|ref|YP_182509.1| - 1.7e-05 24.1 0.0 0.0003 20.0 0.0 2.3 1 1 1 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_5 PF07728.9 gi|57640031|ref|YP_182509.1| - 3.5e-05 23.5 0.0 0.0027 17.4 0.0 2.7 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) Sigma54_activat PF00158.21 gi|57640031|ref|YP_182509.1| - 0.00084 18.8 0.0 0.028 13.9 0.0 2.5 2 0 0 2 2 2 1 Sigma-54 interaction domain Zn-ribbon_8 PF09723.5 gi|57640031|ref|YP_182509.1| - 0.0027 17.6 0.4 0.0058 16.5 0.3 1.5 1 0 0 1 1 1 1 Zinc ribbon domain zf-ribbon_3 PF13248.1 gi|57640031|ref|YP_182509.1| - 0.0045 16.1 1.1 0.84 8.9 0.1 2.3 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|57640031|ref|YP_182509.1| - 0.084 12.3 3.5 1.8 8.1 2.4 2.3 1 1 2 3 3 3 0 zinc-ribbon domain PhnA_Zn_Ribbon PF08274.7 gi|57640031|ref|YP_182509.1| - 0.094 12.5 0.0 0.094 12.5 0.0 1.9 2 0 0 2 2 2 0 PhnA Zinc-Ribbon DZR PF12773.2 gi|57640031|ref|YP_182509.1| - 0.11 12.3 0.6 0.32 10.8 0.4 1.7 1 1 0 1 1 1 0 Double zinc ribbon AAA_16 PF13191.1 gi|57640031|ref|YP_182509.1| - 0.15 12.0 5.1 4 7.3 0.0 3.7 3 2 0 3 3 3 0 AAA ATPase domain HypA PF01155.14 gi|57640031|ref|YP_182509.1| - 0.15 11.7 0.1 0.37 10.4 0.1 1.6 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family DUF1610 PF07754.6 gi|57640031|ref|YP_182509.1| - 0.31 11.2 4.6 0.73 10.0 0.9 2.7 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) UPF0547 PF10571.4 gi|57640031|ref|YP_182509.1| - 0.91 9.2 4.2 5.8 6.7 2.9 2.1 1 1 1 2 2 2 0 Uncharacterised protein family UPF0547 AAA_22 PF13401.1 gi|57640031|ref|YP_182509.1| - 1.5 8.9 3.4 8.3 6.5 0.0 3.7 5 1 0 5 5 4 0 AAA domain Zn_Tnp_IS1595 PF12760.2 gi|57640031|ref|YP_182509.1| - 1.7 8.4 3.0 6.2 6.7 0.2 2.4 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Neuropep_like PF15161.1 gi|57640032|ref|YP_182510.1| - 0.0074 15.7 0.1 0.046 13.2 0.0 2.0 2 0 0 2 2 2 1 Neuropeptide-like Sec66 PF09802.4 gi|57640035|ref|YP_182513.1| - 0.087 12.2 0.1 0.11 11.9 0.0 1.2 1 0 0 1 1 1 0 Preprotein translocase subunit Sec66 WHG PF13305.1 gi|57640035|ref|YP_182513.1| - 0.11 13.1 0.0 0.17 12.4 0.0 1.3 1 0 0 1 1 1 0 WHG domain NaeI PF09126.5 gi|57640036|ref|YP_182514.1| - 0.028 13.0 0.1 0.03 12.9 0.0 1.0 1 0 0 1 1 1 0 Restriction endonuclease NaeI Hs1pro-1_C PF07014.7 gi|57640036|ref|YP_182514.1| - 0.067 12.5 0.1 0.067 12.5 0.1 1.0 1 0 0 1 1 1 0 Hs1pro-1 protein C-terminus Annexin PF00191.15 gi|57640036|ref|YP_182514.1| - 0.24 11.3 1.3 0.85 9.5 0.9 1.9 1 1 0 1 1 1 0 Annexin VWA_CoxE PF05762.9 gi|57640038|ref|YP_182516.1| - 0.07 12.2 0.0 0.34 10.0 0.0 1.7 1 1 1 2 2 2 0 VWA domain containing CoxE-like protein DUF3334 PF11813.3 gi|57640038|ref|YP_182516.1| - 0.11 12.0 0.0 0.13 11.7 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3334) Phage_integrase PF00589.17 gi|57640039|ref|YP_182517.1| - 2.6e-07 30.4 1.9 5.5e-06 26.1 1.3 2.1 1 1 0 1 1 1 1 Phage integrase family DUF4415 PF14384.1 gi|57640040|ref|YP_182518.1| - 0.15 12.2 0.5 0.48 10.6 0.4 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4415) TP_methylase PF00590.15 gi|57640041|ref|YP_182519.1| - 1.2e-18 67.5 0.0 1.5e-18 67.2 0.0 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases DUF1788 PF08747.6 gi|57640041|ref|YP_182519.1| - 0.054 13.3 0.0 0.12 12.2 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF1788) Fe_dep_repr_C PF02742.10 gi|57640042|ref|YP_182520.1| - 1.5e-20 72.6 0.1 2.9e-20 71.7 0.1 1.5 1 1 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain Fe_dep_repress PF01325.14 gi|57640042|ref|YP_182520.1| - 1.2e-17 63.5 0.6 2.2e-17 62.7 0.4 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain MarR PF01047.17 gi|57640042|ref|YP_182520.1| - 2.1e-08 33.7 0.0 4.6e-08 32.6 0.0 1.5 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.2 gi|57640042|ref|YP_182520.1| - 3.3e-08 33.0 0.0 6.8e-08 32.0 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|57640042|ref|YP_182520.1| - 2.4e-07 30.9 0.0 3.3e-07 30.5 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.14 gi|57640042|ref|YP_182520.1| - 4e-06 26.4 0.3 7e-06 25.6 0.2 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|57640042|ref|YP_182520.1| - 1.2e-05 24.5 0.0 2.9e-05 23.3 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.1 gi|57640042|ref|YP_182520.1| - 2e-05 24.2 0.0 3.8e-05 23.3 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain Rrf2 PF02082.15 gi|57640042|ref|YP_182520.1| - 4.4e-05 23.5 0.1 0.00027 20.9 0.0 2.0 2 0 0 2 2 2 1 Transcriptional regulator DUF2250 PF10007.4 gi|57640042|ref|YP_182520.1| - 0.00056 19.7 1.2 0.00087 19.1 0.8 1.3 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_45 PF14947.1 gi|57640042|ref|YP_182520.1| - 0.00056 19.6 0.3 0.001 18.8 0.2 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix GntR PF00392.16 gi|57640042|ref|YP_182520.1| - 0.00097 18.5 0.0 0.0019 17.5 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family LexA_DNA_bind PF01726.11 gi|57640042|ref|YP_182520.1| - 0.0011 18.5 0.1 0.0048 16.4 0.0 2.2 2 1 0 2 2 1 1 LexA DNA binding domain HTH_5 PF01022.15 gi|57640042|ref|YP_182520.1| - 0.0016 18.0 0.0 0.0036 16.9 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family IF2_N PF04760.10 gi|57640042|ref|YP_182520.1| - 0.0019 17.7 0.0 0.0046 16.5 0.0 1.6 1 0 0 1 1 1 1 Translation initiation factor IF-2, N-terminal region HTH_12 PF08461.5 gi|57640042|ref|YP_182520.1| - 0.0021 17.7 0.7 0.0087 15.7 0.5 2.0 1 1 0 1 1 1 1 Ribonuclease R winged-helix domain TFIIE_alpha PF02002.12 gi|57640042|ref|YP_182520.1| - 0.0033 16.8 1.5 0.0043 16.5 0.3 1.7 2 0 0 2 2 2 1 TFIIE alpha subunit HTH_20 PF12840.2 gi|57640042|ref|YP_182520.1| - 0.0051 16.5 0.0 0.011 15.4 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HxlR PF01638.12 gi|57640042|ref|YP_182520.1| - 0.0099 15.4 0.1 0.19 11.3 0.0 2.3 2 1 0 2 2 2 1 HxlR-like helix-turn-helix HTH_23 PF13384.1 gi|57640042|ref|YP_182520.1| - 0.013 15.1 0.0 0.032 13.8 0.0 1.7 1 0 0 1 1 1 0 Homeodomain-like domain Penicillinase_R PF03965.11 gi|57640042|ref|YP_182520.1| - 0.014 15.4 0.5 0.049 13.7 0.1 1.9 2 0 0 2 2 2 0 Penicillinase repressor HemN_C PF06969.11 gi|57640042|ref|YP_182520.1| - 0.018 15.0 0.2 0.041 13.9 0.0 1.8 2 0 0 2 2 1 0 HemN C-terminal domain HTH_36 PF13730.1 gi|57640042|ref|YP_182520.1| - 0.018 15.1 0.0 0.036 14.1 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain B-block_TFIIIC PF04182.7 gi|57640042|ref|YP_182520.1| - 0.022 14.6 0.0 0.04 13.7 0.0 1.4 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC Mrr_N PF14338.1 gi|57640042|ref|YP_182520.1| - 0.034 14.2 0.3 0.27 11.3 0.0 2.2 2 0 0 2 2 2 0 Mrr N-terminal domain Rio2_N PF09202.6 gi|57640042|ref|YP_182520.1| - 0.035 14.1 0.3 0.54 10.3 0.1 2.1 2 0 0 2 2 2 0 Rio2, N-terminal HTH_29 PF13551.1 gi|57640042|ref|YP_182520.1| - 0.044 13.9 0.0 0.089 12.9 0.0 1.5 2 0 0 2 2 1 0 Winged helix-turn helix ATPgrasp_ST PF14397.1 gi|57640042|ref|YP_182520.1| - 0.089 11.8 0.3 0.12 11.4 0.2 1.1 1 0 0 1 1 1 0 Sugar-transfer associated ATP-grasp HTH_10 PF04967.7 gi|57640042|ref|YP_182520.1| - 0.093 12.3 0.0 0.69 9.5 0.0 2.3 2 0 0 2 2 2 0 HTH DNA binding domain DUF2391 PF09622.5 gi|57640043|ref|YP_182521.1| - 1.2e-09 37.7 0.8 1.8e-09 37.1 0.6 1.2 1 0 0 1 1 1 1 Putative integral membrane protein (DUF2391) Matrilin_ccoil PF10393.4 gi|57640043|ref|YP_182521.1| - 0.11 11.8 0.2 0.21 10.9 0.2 1.4 1 0 0 1 1 1 0 Trimeric coiled-coil oligomerisation domain of matrilin Cation_ATPase_C PF00689.16 gi|57640043|ref|YP_182521.1| - 0.19 11.2 5.0 0.25 10.8 3.5 1.5 1 1 0 1 1 1 0 Cation transporting ATPase, C-terminus DUF3226 PF11536.3 gi|57640044|ref|YP_182522.1| - 1.3e-102 342.3 0.1 1.7e-102 341.9 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3226) HAD_2 PF13419.1 gi|57640045|ref|YP_182523.1| - 4.3e-22 79.1 0.0 5.6e-22 78.8 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|57640045|ref|YP_182523.1| - 1.1e-07 31.5 0.0 2.5e-07 30.2 0.0 1.6 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.21 gi|57640045|ref|YP_182523.1| - 2.8e-07 31.1 0.1 5.8e-07 30.1 0.1 1.6 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase DUF1610 PF07754.6 gi|57640046|ref|YP_182524.1| - 2.6e-21 75.3 16.6 7.1e-14 51.5 3.0 2.1 2 0 0 2 2 2 2 Domain of unknown function (DUF1610) PolC_DP2 PF03833.8 gi|57640046|ref|YP_182524.1| - 0.00012 19.9 4.7 0.00013 19.8 3.3 1.0 1 0 0 1 1 1 1 DNA polymerase II large subunit DP2 zinc_ribbon_2 PF13240.1 gi|57640046|ref|YP_182524.1| - 0.00041 19.7 9.4 0.0016 17.8 3.0 3.3 3 1 1 4 4 4 3 zinc-ribbon domain DZR PF12773.2 gi|57640046|ref|YP_182524.1| - 0.0015 18.2 12.0 0.0043 16.8 4.2 2.4 1 1 1 2 2 2 2 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|57640046|ref|YP_182524.1| - 0.0022 17.1 17.9 0.015 14.4 3.8 3.6 3 1 1 4 4 4 3 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|57640046|ref|YP_182524.1| - 0.0069 16.0 1.7 0.0069 16.0 1.2 2.8 1 1 2 3 3 3 1 Putative transposase DNA-binding domain zf-RING_3 PF14369.1 gi|57640046|ref|YP_182524.1| - 0.0073 16.2 1.4 0.0073 16.2 1.0 2.5 1 1 1 2 2 2 1 zinc-finger PhnA_Zn_Ribbon PF08274.7 gi|57640046|ref|YP_182524.1| - 0.0083 15.8 14.5 0.4 10.5 0.3 3.9 3 1 1 4 4 4 1 PhnA Zinc-Ribbon zf-B_box PF00643.19 gi|57640046|ref|YP_182524.1| - 0.0093 15.8 10.4 0.19 11.6 3.5 2.7 1 1 1 2 2 2 1 B-box zinc finger Prok-RING_1 PF14446.1 gi|57640046|ref|YP_182524.1| - 0.014 15.0 1.1 0.014 15.0 0.8 2.6 1 1 0 2 2 2 0 Prokaryotic RING finger family 1 DUF3039 PF11238.3 gi|57640046|ref|YP_182524.1| - 0.017 14.5 1.0 0.017 14.5 0.7 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3039) DUF1272 PF06906.6 gi|57640046|ref|YP_182524.1| - 0.047 13.5 10.1 17 5.3 7.0 2.7 1 1 0 1 1 1 0 Protein of unknown function (DUF1272) HypA PF01155.14 gi|57640046|ref|YP_182524.1| - 0.049 13.3 10.1 0.76 9.4 7.0 2.1 1 1 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-C3HC4_4 PF15227.1 gi|57640046|ref|YP_182524.1| - 0.054 13.3 1.1 0.054 13.3 0.8 2.3 2 1 0 2 2 2 0 zinc finger of C3HC4-type, RING YhfH PF14149.1 gi|57640046|ref|YP_182524.1| - 0.072 12.8 12.2 0.27 11.0 1.3 3.2 2 1 1 3 3 3 0 YhfH-like protein zf-C2H2 PF00096.21 gi|57640046|ref|YP_182524.1| - 0.081 13.3 11.7 4.6 7.7 0.3 3.9 4 0 0 4 4 4 0 Zinc finger, C2H2 type zf-MYND PF01753.13 gi|57640046|ref|YP_182524.1| - 0.1 12.4 6.8 0.42 10.5 0.1 2.2 1 1 1 2 2 2 0 MYND finger DUF3505 PF12013.3 gi|57640046|ref|YP_182524.1| - 0.12 12.6 0.6 0.12 12.6 0.4 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3505) zf-TFIIB PF13453.1 gi|57640046|ref|YP_182524.1| - 0.13 11.4 15.1 1.6 8.0 6.0 3.3 2 1 0 2 2 2 0 Transcription factor zinc-finger IBR PF01485.16 gi|57640046|ref|YP_182524.1| - 0.21 11.4 10.6 0.053 13.4 3.4 2.0 1 1 1 2 2 2 0 IBR domain Sgf11 PF08209.6 gi|57640046|ref|YP_182524.1| - 0.26 10.6 0.5 0.26 10.6 0.4 3.7 3 1 1 4 4 4 0 Sgf11 (transcriptional regulation protein) zf-C2HC5 PF06221.8 gi|57640046|ref|YP_182524.1| - 0.36 10.6 9.1 0.042 13.5 2.3 2.1 1 1 1 2 2 2 0 Putative zinc finger motif, C2HC5-type Zn_Tnp_IS1595 PF12760.2 gi|57640046|ref|YP_182524.1| - 0.38 10.6 21.6 9.4 6.1 10.9 3.7 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zf-Mss51 PF13824.1 gi|57640046|ref|YP_182524.1| - 0.39 10.6 12.6 0.77 9.6 1.3 2.5 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 DUF35_N PF12172.3 gi|57640046|ref|YP_182524.1| - 0.39 10.6 16.1 6 6.9 3.0 3.8 2 2 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Tnp_zf-ribbon_2 PF13842.1 gi|57640046|ref|YP_182524.1| - 0.48 10.8 10.1 33 5.0 7.3 2.3 1 1 0 1 1 1 0 DDE_Tnp_1-like zinc-ribbon DUF2296 PF10058.4 gi|57640046|ref|YP_182524.1| - 0.59 9.9 15.9 4.7 7.0 2.2 3.8 1 1 2 3 3 3 0 Predicted integral membrane metal-binding protein (DUF2296) TF_Zn_Ribbon PF08271.7 gi|57640046|ref|YP_182524.1| - 0.65 9.3 18.8 0.24 10.7 4.0 3.4 3 1 1 4 4 4 0 TFIIB zinc-binding C1_3 PF07649.7 gi|57640046|ref|YP_182524.1| - 0.71 9.9 12.0 3.4 7.7 2.1 2.4 2 1 0 2 2 2 0 C1-like domain zf-HIT PF04438.11 gi|57640046|ref|YP_182524.1| - 0.71 9.5 15.9 1 9.0 3.5 3.1 1 1 1 2 2 2 0 HIT zinc finger zf-NADH-PPase PF09297.6 gi|57640046|ref|YP_182524.1| - 0.74 9.3 14.8 1.9 8.0 3.6 3.7 3 1 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain zf-C4_Topoisom PF01396.14 gi|57640046|ref|YP_182524.1| - 0.76 9.3 13.3 4.6 6.8 0.6 3.6 3 1 1 4 4 4 0 Topoisomerase DNA binding C4 zinc finger Ribosomal_L37ae PF01780.14 gi|57640046|ref|YP_182524.1| - 0.82 9.5 10.9 0.39 10.6 0.3 2.9 1 1 1 2 2 2 0 Ribosomal L37ae protein family FUR PF01475.14 gi|57640046|ref|YP_182524.1| - 0.85 9.5 2.5 0.7 9.8 0.2 1.8 1 1 1 2 2 2 0 Ferric uptake regulator family NOB1_Zn_bind PF08772.6 gi|57640046|ref|YP_182524.1| - 0.9 9.4 11.6 0.45 10.3 3.9 2.3 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like Rubredoxin PF00301.15 gi|57640046|ref|YP_182524.1| - 0.92 9.4 17.2 3.2 7.7 2.0 3.9 2 2 1 3 3 3 0 Rubredoxin zf-CHY PF05495.7 gi|57640046|ref|YP_182524.1| - 1 9.5 8.9 0.53 10.4 0.7 2.1 1 1 1 2 2 2 0 CHY zinc finger zf-AN1 PF01428.11 gi|57640046|ref|YP_182524.1| - 1.1 9.1 11.5 5.3 7.0 1.1 3.0 2 2 1 3 3 3 0 AN1-like Zinc finger ADK_lid PF05191.9 gi|57640046|ref|YP_182524.1| - 1.4 8.6 10.8 5.9 6.6 0.2 3.5 3 1 0 3 3 3 0 Adenylate kinase, active site lid TFIIS_C PF01096.13 gi|57640046|ref|YP_182524.1| - 1.4 8.5 13.9 6.7 6.4 0.1 3.8 3 1 0 4 4 4 0 Transcription factor S-II (TFIIS) Zn_Tnp_IS91 PF14319.1 gi|57640046|ref|YP_182524.1| - 1.6 8.2 10.5 0.24 10.9 0.8 2.3 1 1 1 2 2 2 0 Transposase zinc-binding domain NinF PF05810.7 gi|57640046|ref|YP_182524.1| - 1.9 8.3 5.2 1 9.2 2.0 1.7 1 1 1 2 2 2 0 NinF protein zf-ISL3 PF14690.1 gi|57640046|ref|YP_182524.1| - 1.9 8.5 16.8 7.9 6.6 0.5 3.8 3 1 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 C1_1 PF00130.17 gi|57640046|ref|YP_182524.1| - 2 8.2 11.4 72 3.2 7.9 2.6 1 1 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) FYVE PF01363.16 gi|57640046|ref|YP_182524.1| - 2.1 8.3 9.4 5.4 6.9 6.5 1.6 1 1 0 1 1 1 0 FYVE zinc finger DUF2256 PF10013.4 gi|57640046|ref|YP_182524.1| - 2.4 7.9 9.7 2.6 7.8 0.9 3.1 2 1 1 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2256) zf-H2C2_2 PF13465.1 gi|57640046|ref|YP_182524.1| - 2.4 8.6 16.3 3.7 8.0 1.3 3.9 3 1 1 4 4 4 0 Zinc-finger double domain zf-C3HC4_3 PF13920.1 gi|57640046|ref|YP_182524.1| - 2.4 7.8 13.2 2.5e+02 1.4 9.1 2.6 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) Nop10p PF04135.7 gi|57640046|ref|YP_182524.1| - 2.5 7.8 5.1 6.3 6.6 0.3 2.5 1 1 1 2 2 2 0 Nucleolar RNA-binding protein, Nop10p family UPF0547 PF10571.4 gi|57640046|ref|YP_182524.1| - 2.7 7.7 17.7 17 5.2 8.5 3.3 2 1 0 2 2 2 0 Uncharacterised protein family UPF0547 Chordopox_RPO7 PF05864.7 gi|57640046|ref|YP_182524.1| - 2.8 8.0 4.7 16 5.6 2.3 2.4 1 1 0 1 1 1 0 Chordopoxvirus DNA-directed RNA polymerase 7 kDa polypeptide (RPO7) zinc-ribbons_6 PF07191.7 gi|57640046|ref|YP_182524.1| - 3 7.7 10.0 2.6 7.9 3.0 2.3 1 1 1 2 2 2 0 zinc-ribbons zf-RING_5 PF14634.1 gi|57640046|ref|YP_182524.1| - 3 7.6 12.5 31 4.3 8.6 2.4 1 1 0 1 1 1 0 zinc-RING finger domain Zn-ribbon_8 PF09723.5 gi|57640046|ref|YP_182524.1| - 3.1 7.8 19.1 0.71 9.8 2.7 3.5 2 2 1 4 4 4 0 Zinc ribbon domain FYVE_2 PF02318.11 gi|57640046|ref|YP_182524.1| - 3.2 7.6 6.0 7.3 6.5 4.1 1.6 1 1 0 1 1 1 0 FYVE-type zinc finger DUF2039 PF10217.4 gi|57640046|ref|YP_182524.1| - 3.4 7.7 8.1 1 9.4 2.2 1.9 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2039) DUF2072 PF09845.4 gi|57640046|ref|YP_182524.1| - 3.9 7.4 9.7 0.45 10.4 0.8 2.2 1 1 1 2 2 2 0 Zn-ribbon containing protein (DUF2072) LIM PF00412.17 gi|57640046|ref|YP_182524.1| - 4 7.5 10.8 6.4 6.9 1.7 3.0 1 1 2 3 3 3 0 LIM domain DUF329 PF03884.9 gi|57640046|ref|YP_182524.1| - 4.4 6.9 13.3 39 3.8 3.7 3.1 1 1 1 2 2 2 0 Domain of unknown function (DUF329) Gin PF10764.4 gi|57640046|ref|YP_182524.1| - 4.5 7.0 9.3 5.8 6.7 1.5 2.8 1 1 1 2 2 2 0 Inhibitor of sigma-G Gin Elf1 PF05129.8 gi|57640046|ref|YP_182524.1| - 4.6 7.0 9.8 5.7 6.7 3.1 2.8 1 1 1 2 2 2 0 Transcription elongation factor Elf1 like zf-tcix PF14952.1 gi|57640046|ref|YP_182524.1| - 4.8 6.6 13.3 2.6 7.4 0.5 3.1 3 0 0 3 3 3 0 Putative treble-clef, zinc-finger, Zn-binding Nudix_N_2 PF14803.1 gi|57640046|ref|YP_182524.1| - 7.9 6.2 16.9 4.4 7.0 0.6 3.8 2 1 2 4 4 4 0 Nudix N-terminal EF1_GNE PF00736.14 gi|57640047|ref|YP_182525.1| - 1e-22 79.5 0.3 1.1e-22 79.5 0.2 1.0 1 0 0 1 1 1 1 EF-1 guanine nucleotide exchange domain AA_permease_C PF13906.1 gi|57640049|ref|YP_182527.1| - 0.022 14.6 0.3 0.026 14.3 0.2 1.1 1 0 0 1 1 1 0 C-terminus of AA_permease Chs3p PF12271.3 gi|57640049|ref|YP_182527.1| - 0.15 10.9 0.2 0.16 10.8 0.1 1.1 1 0 0 1 1 1 0 Chitin synthase III catalytic subunit SSF PF00474.12 gi|57640050|ref|YP_182528.1| - 4.9e-84 282.3 24.8 6.3e-84 281.9 17.2 1.1 1 0 0 1 1 1 1 Sodium:solute symporter family Fer2_4 PF13510.1 gi|57640051|ref|YP_182529.1| - 7.2e-13 48.1 0.0 1.5e-12 47.1 0.0 1.6 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Pyr_redox_2 PF07992.9 gi|57640051|ref|YP_182529.1| - 8.5e-13 48.6 0.0 2.4e-12 47.1 0.0 1.9 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|57640051|ref|YP_182529.1| - 3.9e-05 22.8 0.3 0.00012 21.3 0.3 1.7 2 0 0 2 2 2 1 Thi4 family NAD_binding_9 PF13454.1 gi|57640051|ref|YP_182529.1| - 0.00046 19.9 1.1 1.1 9.0 0.5 3.3 3 0 0 3 3 3 1 FAD-NAD(P)-binding HI0933_like PF03486.9 gi|57640051|ref|YP_182529.1| - 0.0069 14.8 0.4 0.028 12.9 0.1 2.0 2 1 1 3 3 3 1 HI0933-like protein Pyr_redox_3 PF13738.1 gi|57640051|ref|YP_182529.1| - 0.03 14.3 1.8 4.9 7.1 1.0 2.6 3 0 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.7 gi|57640051|ref|YP_182529.1| - 0.15 10.9 0.2 0.4 9.5 0.3 1.6 2 0 0 2 2 2 0 Lycopene cyclase protein DAO PF01266.19 gi|57640052|ref|YP_182530.1| - 1.2e-87 294.1 0.0 1.4e-87 293.9 0.0 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|57640052|ref|YP_182530.1| - 1.7e-06 27.9 0.2 4.2e-06 26.7 0.1 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.19 gi|57640052|ref|YP_182530.1| - 5.9e-06 25.3 0.2 1.8e-05 23.7 0.1 1.8 1 1 0 1 1 1 1 FAD binding domain Thi4 PF01946.12 gi|57640052|ref|YP_182530.1| - 1.9e-05 23.8 0.2 0.0036 16.4 0.0 2.2 2 0 0 2 2 2 1 Thi4 family Pyr_redox PF00070.22 gi|57640052|ref|YP_182530.1| - 2e-05 24.8 1.7 5e-05 23.6 1.2 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|57640052|ref|YP_182530.1| - 0.0004 19.5 0.2 0.00075 18.6 0.2 1.4 1 0 0 1 1 1 1 FAD binding domain ApbA PF02558.11 gi|57640052|ref|YP_182530.1| - 0.0011 18.4 0.1 0.0018 17.7 0.1 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Pyr_redox_2 PF07992.9 gi|57640052|ref|YP_182530.1| - 0.0013 18.6 1.4 0.0024 17.7 0.5 1.7 1 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_7 PF13241.1 gi|57640052|ref|YP_182530.1| - 0.002 18.3 0.0 0.0038 17.4 0.0 1.5 1 0 0 1 1 1 1 Putative NAD(P)-binding TrkA_N PF02254.13 gi|57640052|ref|YP_182530.1| - 0.0042 17.0 1.1 0.0087 16.0 0.7 1.5 1 0 0 1 1 1 1 TrkA-N domain Pyr_redox_3 PF13738.1 gi|57640052|ref|YP_182530.1| - 0.0044 17.1 0.0 0.033 14.2 0.0 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.13 gi|57640052|ref|YP_182530.1| - 0.0056 16.3 0.1 0.0097 15.5 0.1 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.9 gi|57640052|ref|YP_182530.1| - 0.0073 15.7 0.2 0.013 14.9 0.1 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_Gly3P_dh_N PF01210.18 gi|57640052|ref|YP_182530.1| - 0.0085 15.8 0.1 0.016 14.9 0.0 1.5 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus HI0933_like PF03486.9 gi|57640052|ref|YP_182530.1| - 0.012 14.1 0.3 0.029 12.8 0.1 1.6 2 0 0 2 2 2 0 HI0933-like protein Phage_XkdX PF09693.5 gi|57640052|ref|YP_182530.1| - 0.02 14.4 0.2 0.082 12.4 0.0 2.1 2 0 0 2 2 2 0 Phage uncharacterised protein (Phage_XkdX) F420_oxidored PF03807.12 gi|57640052|ref|YP_182530.1| - 0.02 15.2 0.1 0.049 14.0 0.0 1.8 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent Trp_halogenase PF04820.9 gi|57640052|ref|YP_182530.1| - 0.021 13.4 2.7 0.07 11.7 1.9 2.0 1 1 0 1 1 1 0 Tryptophan halogenase NAD_binding_9 PF13454.1 gi|57640052|ref|YP_182530.1| - 0.045 13.5 0.0 0.074 12.8 0.0 1.4 1 0 0 1 1 1 0 FAD-NAD(P)-binding GIDA PF01134.17 gi|57640052|ref|YP_182530.1| - 0.053 12.3 1.6 0.4 9.4 0.1 2.2 2 0 0 2 2 2 0 Glucose inhibited division protein A FAD_oxidored PF12831.2 gi|57640052|ref|YP_182530.1| - 0.098 11.7 0.0 0.73 8.8 0.0 2.0 2 0 0 2 2 2 0 FAD dependent oxidoreductase Fer2_4 PF13510.1 gi|57640054|ref|YP_182532.1| - 1.8e-30 104.5 0.0 4.7e-30 103.2 0.0 1.8 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Pyr_redox_2 PF07992.9 gi|57640054|ref|YP_182532.1| - 1.7e-25 90.1 0.0 3.4e-25 89.1 0.0 1.8 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|57640054|ref|YP_182532.1| - 7.5e-15 54.6 14.1 3.7e-09 35.9 1.8 3.5 2 1 1 3 3 3 3 FAD binding domain Pyr_redox_3 PF13738.1 gi|57640054|ref|YP_182532.1| - 4.2e-14 53.0 10.2 6e-06 26.4 0.1 3.1 1 1 2 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|57640054|ref|YP_182532.1| - 4.9e-13 49.2 9.3 8.3e-05 22.9 0.7 3.9 2 1 1 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|57640054|ref|YP_182532.1| - 4.9e-13 48.3 12.5 2.2e-10 39.5 0.9 3.2 3 0 0 3 3 3 3 HI0933-like protein FAD_oxidored PF12831.2 gi|57640054|ref|YP_182532.1| - 8.4e-13 48.1 1.5 8.4e-13 48.1 1.1 3.6 2 2 2 4 4 4 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|57640054|ref|YP_182532.1| - 2.4e-11 43.4 3.6 5.7e-06 26.2 0.2 2.8 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain DAO PF01266.19 gi|57640054|ref|YP_182532.1| - 5.1e-10 38.7 16.2 1.1e-06 27.8 0.3 3.9 4 0 0 4 4 4 2 FAD dependent oxidoreductase GIDA PF01134.17 gi|57640054|ref|YP_182532.1| - 1.6e-09 37.1 20.7 5e-06 25.6 1.4 4.1 3 1 1 4 4 4 3 Glucose inhibited division protein A Thi4 PF01946.12 gi|57640054|ref|YP_182532.1| - 5.9e-09 35.3 0.8 0.00016 20.8 0.0 2.5 2 0 0 2 2 2 2 Thi4 family FAD_binding_3 PF01494.14 gi|57640054|ref|YP_182532.1| - 7.5e-09 35.0 10.6 4.3e-05 22.7 0.4 3.1 4 0 0 4 4 4 2 FAD binding domain NAD_binding_7 PF13241.1 gi|57640054|ref|YP_182532.1| - 7.8e-09 35.7 1.3 0.013 15.7 0.1 3.3 3 0 0 3 3 3 2 Putative NAD(P)-binding AlaDh_PNT_C PF01262.16 gi|57640054|ref|YP_182532.1| - 4.8e-06 26.2 6.1 0.00026 20.5 0.2 2.4 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain Lycopene_cycl PF05834.7 gi|57640054|ref|YP_182532.1| - 1.1e-05 24.4 6.8 0.00028 19.9 0.8 2.4 2 1 0 2 2 2 2 Lycopene cyclase protein ApbA PF02558.11 gi|57640054|ref|YP_182532.1| - 0.00019 20.9 6.8 0.0068 15.8 0.6 4.0 4 1 0 4 4 4 1 Ketopantoate reductase PanE/ApbA 3HCDH_N PF02737.13 gi|57640054|ref|YP_182532.1| - 0.00059 19.5 6.3 0.067 12.8 0.2 2.5 2 0 0 2 2 2 2 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_9 PF13454.1 gi|57640054|ref|YP_182532.1| - 0.002 17.9 4.5 0.24 11.1 0.1 3.5 3 0 0 3 3 3 1 FAD-NAD(P)-binding NAD_Gly3P_dh_N PF01210.18 gi|57640054|ref|YP_182532.1| - 0.0027 17.4 0.7 2.2 7.9 0.0 2.4 2 0 0 2 2 2 2 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Amino_oxidase PF01593.19 gi|57640054|ref|YP_182532.1| - 0.0036 16.4 0.1 1.8 7.5 0.0 2.4 2 0 0 2 2 2 2 Flavin containing amine oxidoreductase UDPG_MGDP_dh_N PF03721.9 gi|57640054|ref|YP_182532.1| - 0.0042 16.4 1.6 1.8 7.9 0.1 2.3 2 0 0 2 2 2 2 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain F420_oxidored PF03807.12 gi|57640054|ref|YP_182532.1| - 0.0081 16.5 2.9 0.074 13.4 0.1 3.2 4 0 0 4 4 3 1 NADP oxidoreductase coenzyme F420-dependent Shikimate_DH PF01488.15 gi|57640054|ref|YP_182532.1| - 0.0094 16.0 1.7 1.3 9.0 0.2 2.6 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase K_oxygenase PF13434.1 gi|57640054|ref|YP_182532.1| - 0.012 14.5 0.1 0.67 8.7 0.0 2.2 2 0 0 2 2 2 0 L-lysine 6-monooxygenase (NADPH-requiring) ELFV_dehydrog PF00208.16 gi|57640054|ref|YP_182532.1| - 0.028 14.0 0.2 0.28 10.7 0.0 2.2 2 0 0 2 2 2 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase TrkA_N PF02254.13 gi|57640054|ref|YP_182532.1| - 0.035 14.0 1.1 4.7 7.2 0.2 2.8 2 0 0 2 2 2 0 TrkA-N domain Fer2 PF00111.22 gi|57640054|ref|YP_182532.1| - 0.058 13.1 1.5 0.18 11.5 1.0 1.9 1 1 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain Trp_halogenase PF04820.9 gi|57640054|ref|YP_182532.1| - 0.085 11.4 6.8 0.033 12.8 0.5 2.1 2 0 0 2 2 2 0 Tryptophan halogenase Glyco_trans_4_4 PF13579.1 gi|57640054|ref|YP_182532.1| - 0.1 12.7 0.9 0.68 10.0 0.3 2.2 2 0 0 2 2 2 0 Glycosyl transferase 4-like domain Fer2_3 PF13085.1 gi|57640054|ref|YP_182532.1| - 0.1 12.4 0.0 0.17 11.7 0.0 1.3 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain XdhC_C PF13478.1 gi|57640054|ref|YP_182532.1| - 0.1 12.8 1.1 17 5.7 0.1 2.9 3 0 0 3 3 3 0 XdhC Rossmann domain NAD_binding_10 PF13460.1 gi|57640054|ref|YP_182532.1| - 0.12 12.3 5.2 0.13 12.2 0.4 2.3 2 0 0 2 2 2 0 NADH(P)-binding DHODB_Fe-S_bind PF10418.4 gi|57640054|ref|YP_182532.1| - 0.16 11.4 1.4 0.29 10.6 1.0 1.4 1 0 0 1 1 1 0 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B ThiF PF00899.16 gi|57640054|ref|YP_182532.1| - 0.4 10.5 5.4 0.069 12.9 0.5 2.1 2 0 0 2 2 2 0 ThiF family NAD_binding_2 PF03446.10 gi|57640054|ref|YP_182532.1| - 0.96 9.2 5.1 5 6.9 0.0 2.7 3 0 0 3 3 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase Fer4 PF00037.22 gi|57640055|ref|YP_182533.1| - 1.8e-07 30.4 19.5 3e-07 29.7 1.6 2.8 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|57640055|ref|YP_182533.1| - 2.1e-07 30.5 22.0 6.2e-05 22.7 0.3 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|57640055|ref|YP_182533.1| - 1.5e-06 28.5 10.5 2.7e-06 27.6 7.3 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|57640055|ref|YP_182533.1| - 1.7e-06 27.6 13.8 4.4e-05 23.1 0.7 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|57640055|ref|YP_182533.1| - 1.8e-05 24.9 10.9 5.8e-05 23.2 7.5 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|57640055|ref|YP_182533.1| - 3.6e-05 23.4 2.9 3.6e-05 23.4 2.0 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_21 PF14697.1 gi|57640055|ref|YP_182533.1| - 5e-05 23.0 14.2 0.00013 21.7 8.4 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|57640055|ref|YP_182533.1| - 0.0002 21.3 4.5 0.0041 17.1 0.0 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|57640055|ref|YP_182533.1| - 0.00025 21.7 10.4 0.063 14.0 7.3 2.3 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|57640055|ref|YP_182533.1| - 0.00091 19.3 0.6 0.00091 19.3 0.4 2.5 2 1 0 2 2 2 1 4Fe-4S binding domain Fer4_15 PF13459.1 gi|57640055|ref|YP_182533.1| - 0.0011 19.5 5.1 0.0018 18.8 0.1 2.7 2 1 0 2 2 2 1 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|57640055|ref|YP_182533.1| - 0.002 18.5 19.9 0.14 12.8 3.9 2.8 2 1 1 3 3 3 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|57640055|ref|YP_182533.1| - 0.0039 17.5 9.5 0.072 13.5 1.7 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|57640055|ref|YP_182533.1| - 0.0088 16.4 0.3 0.0088 16.4 0.2 2.6 2 1 0 2 2 2 1 4Fe-4S single cluster domain Fer4_11 PF13247.1 gi|57640055|ref|YP_182533.1| - 0.0096 15.7 2.2 0.014 15.2 1.5 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|57640055|ref|YP_182533.1| - 0.36 11.2 11.1 0.24 11.7 1.2 2.5 1 1 1 3 3 3 0 4Fe-4S dicluster domain Fer2_BFD PF04324.10 gi|57640056|ref|YP_182534.1| - 1.2e-10 41.2 1.8 1.6e-10 40.9 1.3 1.2 1 0 0 1 1 1 1 BFD-like [2Fe-2S] binding domain DAO PF01266.19 gi|57640057|ref|YP_182535.1| - 5.6e-85 285.3 0.0 6.3e-85 285.2 0.0 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|57640057|ref|YP_182535.1| - 3.2e-07 29.5 1.3 3.4e-06 26.1 0.9 2.0 1 1 0 1 1 1 1 FAD binding domain NAD_binding_8 PF13450.1 gi|57640057|ref|YP_182535.1| - 2.1e-05 24.4 1.1 6.8e-05 22.8 0.2 2.3 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.22 gi|57640057|ref|YP_182535.1| - 9.3e-05 22.7 1.2 0.0016 18.7 0.1 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|57640057|ref|YP_182535.1| - 0.00012 22.1 0.1 0.021 14.8 0.1 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|57640057|ref|YP_182535.1| - 0.016 14.3 1.1 0.081 11.9 0.2 2.0 2 0 0 2 2 2 0 Thi4 family FAD_oxidored PF12831.2 gi|57640057|ref|YP_182535.1| - 0.034 13.2 0.3 0.18 10.8 0.2 2.0 1 1 0 1 1 1 0 FAD dependent oxidoreductase NAD_binding_9 PF13454.1 gi|57640057|ref|YP_182535.1| - 0.048 13.4 1.4 0.097 12.4 0.2 1.9 2 0 0 2 2 2 0 FAD-NAD(P)-binding FAD_binding_3 PF01494.14 gi|57640057|ref|YP_182535.1| - 0.062 12.3 0.9 0.55 9.2 0.2 2.1 2 0 0 2 2 2 0 FAD binding domain Pyr_redox_2 PF07992.9 gi|57640057|ref|YP_182535.1| - 0.13 12.1 2.5 0.24 11.2 0.5 2.0 1 1 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|57640057|ref|YP_182535.1| - 0.23 9.8 0.7 13 4.1 0.3 2.1 2 0 0 2 2 2 0 HI0933-like protein MFS_1 PF07690.11 gi|57640058|ref|YP_182536.1| - 1.1e-42 145.9 57.5 1.2e-24 86.6 20.8 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_3 PF05977.8 gi|57640058|ref|YP_182536.1| - 1.5e-08 33.2 25.4 2e-08 32.8 17.6 1.2 1 0 0 1 1 1 1 Transmembrane secretion effector Sugar_tr PF00083.19 gi|57640058|ref|YP_182536.1| - 4.1e-07 28.9 44.3 3.8e-05 22.4 9.0 4.1 2 1 2 4 4 4 4 Sugar (and other) transporter MFS_1_like PF12832.2 gi|57640058|ref|YP_182536.1| - 4.8e-07 29.4 3.7 4.8e-07 29.4 2.5 3.4 3 1 0 3 3 3 1 MFS_1 like family DUF3733 PF12534.3 gi|57640058|ref|YP_182536.1| - 3e-05 23.2 1.1 0.00012 21.2 0.7 2.0 1 0 0 1 1 1 1 Leucine-rich repeat containing protein 8 MFS_2 PF13347.1 gi|57640058|ref|YP_182536.1| - 0.00031 19.2 32.9 0.018 13.4 9.8 2.3 1 1 1 2 2 2 2 MFS/sugar transport protein DUF373 PF04123.8 gi|57640058|ref|YP_182536.1| - 1 8.2 22.2 0.0075 15.3 7.8 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF373) DUF4358 PF14270.1 gi|57640059|ref|YP_182537.1| - 0.052 13.4 0.2 0.076 12.9 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4358) HTH_45 PF14947.1 gi|57640059|ref|YP_182537.1| - 0.056 13.2 0.3 0.088 12.6 0.2 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix Acetyltransf_1 PF00583.19 gi|57640060|ref|YP_182538.1| - 3.4e-21 75.0 0.3 6.7e-21 74.1 0.2 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|57640060|ref|YP_182538.1| - 9.8e-16 57.6 0.9 1.7e-15 56.9 0.7 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|57640060|ref|YP_182538.1| - 4.3e-12 46.1 0.1 5.4e-12 45.8 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|57640060|ref|YP_182538.1| - 7.5e-09 35.6 0.1 8.3e-09 35.4 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|57640060|ref|YP_182538.1| - 1.9e-08 34.3 0.1 2.5e-08 34.0 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|57640060|ref|YP_182538.1| - 1.1e-06 28.9 0.3 1.5e-06 28.4 0.2 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|57640060|ref|YP_182538.1| - 2.2e-06 27.5 0.2 3.4e-06 26.9 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|57640060|ref|YP_182538.1| - 1.1e-05 25.0 0.0 1.8e-05 24.3 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_CG PF14542.1 gi|57640060|ref|YP_182538.1| - 1.9e-05 24.4 0.5 5.1e-05 23.0 0.1 1.9 1 1 1 2 2 2 1 GCN5-related N-acetyl-transferase Acetyltransf_6 PF13480.1 gi|57640060|ref|YP_182538.1| - 0.014 15.3 0.0 0.03 14.2 0.0 1.5 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Mec-17 PF05301.6 gi|57640060|ref|YP_182538.1| - 0.088 12.7 0.2 0.49 10.3 0.0 2.0 1 1 1 2 2 2 0 Touch receptor neuron protein Mec-17 HTH_3 PF01381.17 gi|57640061|ref|YP_182539.1| - 1.5e-06 27.9 0.1 2.6e-06 27.1 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix DZR PF12773.2 gi|57640061|ref|YP_182539.1| - 0.054 13.3 0.3 0.089 12.6 0.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon HTH_19 PF12844.2 gi|57640061|ref|YP_182539.1| - 0.056 13.5 0.3 0.17 11.9 0.2 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain Motilin_ghrelin PF04644.7 gi|57640062|ref|YP_182540.1| - 0.49 10.2 2.1 0.54 10.1 0.3 1.8 2 0 0 2 2 2 0 Motilin/ghrelin PIN PF01850.16 gi|57640063|ref|YP_182541.1| - 5.4e-24 84.8 0.1 6.2e-24 84.6 0.1 1.0 1 0 0 1 1 1 1 PIN domain DUF356 PF04009.7 gi|57640064|ref|YP_182542.1| - 2.4e-41 140.1 0.0 3.2e-41 139.7 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF356) SDH_sah PF01972.11 gi|57640065|ref|YP_182543.1| - 5.6e-155 514.2 0.2 6.2e-155 514.1 0.1 1.0 1 0 0 1 1 1 1 Serine dehydrogenase proteinase CLP_protease PF00574.18 gi|57640065|ref|YP_182543.1| - 1.2e-09 38.1 0.1 2.4e-09 37.1 0.0 1.6 2 0 0 2 2 2 1 Clp protease ECH PF00378.15 gi|57640065|ref|YP_182543.1| - 0.00019 20.6 0.0 0.00029 20.0 0.0 1.4 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family Peptidase_S49 PF01343.13 gi|57640065|ref|YP_182543.1| - 0.0007 19.4 0.0 0.0014 18.4 0.0 1.5 1 0 0 1 1 1 1 Peptidase family S49 DUF505 PF04458.7 gi|57640066|ref|YP_182544.1| - 7.1e-240 797.1 24.7 7.9e-240 796.9 17.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF505) AAA_assoc_C PF09821.4 gi|57640066|ref|YP_182544.1| - 1.3e-05 25.4 5.3 0.0031 17.7 0.0 4.3 5 0 0 5 5 5 1 C-terminal AAA-associated domain HTH_45 PF14947.1 gi|57640066|ref|YP_182544.1| - 0.00022 20.9 11.0 1.2 8.9 0.0 6.7 7 0 0 7 7 7 1 Winged helix-turn-helix HemN_C PF06969.11 gi|57640066|ref|YP_182544.1| - 0.015 15.3 0.6 10 6.3 0.0 4.0 4 0 0 4 4 4 0 HemN C-terminal domain Leucyl-specific PF14795.1 gi|57640066|ref|YP_182544.1| - 0.024 14.4 1.2 0.1 12.4 0.0 2.7 3 0 0 3 3 3 0 Leucine-tRNA synthetase-specific domain HTH_27 PF13463.1 gi|57640066|ref|YP_182544.1| - 0.16 12.3 4.9 19 5.6 0.0 4.2 4 0 0 4 4 4 0 Winged helix DNA-binding domain HA2 PF04408.18 gi|57640066|ref|YP_182544.1| - 0.28 11.2 1.5 12 6.0 0.1 3.7 4 0 0 4 4 4 0 Helicase associated domain (HA2) TBP PF00352.16 gi|57640067|ref|YP_182545.1| - 1.3e-64 213.4 0.0 1.1e-31 107.9 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.3 gi|57640067|ref|YP_182545.1| - 6.7e-07 29.2 0.0 0.00074 19.5 0.0 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) Lip_prot_lig_C PF10437.4 gi|57640067|ref|YP_182545.1| - 0.027 14.1 0.0 0.5 10.0 0.0 2.4 2 0 0 2 2 2 0 Bacterial lipoate protein ligase C-terminus AIRS_C PF02769.17 gi|57640067|ref|YP_182545.1| - 0.077 13.0 0.0 0.96 9.4 0.0 2.1 2 0 0 2 2 2 0 AIR synthase related protein, C-terminal domain DUF2250 PF10007.4 gi|57640067|ref|YP_182545.1| - 0.15 12.0 0.2 0.33 10.8 0.0 1.6 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) HemN_C PF06969.11 gi|57640067|ref|YP_182545.1| - 0.17 11.9 0.4 0.38 10.8 0.1 1.7 2 0 0 2 2 2 0 HemN C-terminal domain CcmH PF03918.9 gi|57640068|ref|YP_182546.1| - 0.021 13.7 0.0 0.082 11.9 0.0 1.8 2 0 0 2 2 2 0 Cytochrome C biogenesis protein PqqD PF05402.7 gi|57640068|ref|YP_182546.1| - 0.05 13.6 0.6 0.13 12.2 0.0 2.0 2 0 0 2 2 2 0 Coenzyme PQQ synthesis protein D (PqqD) DUF167 PF02594.11 gi|57640068|ref|YP_182546.1| - 0.11 12.4 0.0 0.35 10.8 0.0 1.8 1 1 0 1 1 1 0 Uncharacterised ACR, YggU family COG1872 Hist_deacetyl PF00850.14 gi|57640069|ref|YP_182547.1| - 9.3e-74 248.5 0.0 1.2e-73 248.0 0.0 1.0 1 0 0 1 1 1 1 Histone deacetylase domain POR PF01558.13 gi|57640070|ref|YP_182548.1| - 3.9e-37 127.8 0.1 4.6e-37 127.5 0.1 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_C PF02775.16 gi|57640071|ref|YP_182549.1| - 1.2e-28 99.6 1.6 1.5e-28 99.3 0.3 1.8 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.14 gi|57640071|ref|YP_182549.1| - 3e-15 56.3 0.1 4.7e-15 55.7 0.1 1.3 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Fer4_7 PF12838.2 gi|57640071|ref|YP_182549.1| - 1.7e-09 37.9 12.1 1.7e-09 37.9 8.4 2.5 3 0 0 3 3 2 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|57640071|ref|YP_182549.1| - 3e-08 32.9 19.3 3.4e-07 29.5 2.0 3.0 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|57640071|ref|YP_182549.1| - 3.7e-07 29.8 12.1 9.7e-07 28.4 8.4 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|57640071|ref|YP_182549.1| - 1e-06 28.8 12.5 4.2e-06 26.9 8.2 2.3 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|57640071|ref|YP_182549.1| - 3.9e-06 26.4 13.3 0.008 16.0 2.1 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|57640071|ref|YP_182549.1| - 1.8e-05 24.4 10.1 0.014 15.2 1.4 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain DXP_synthase_N PF13292.1 gi|57640071|ref|YP_182549.1| - 0.0014 17.6 0.4 0.023 13.6 0.2 2.2 1 1 1 2 2 2 1 1-deoxy-D-xylulose-5-phosphate synthase Fer4_6 PF12837.2 gi|57640071|ref|YP_182549.1| - 0.0032 17.2 18.7 0.021 14.6 1.4 3.0 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|57640071|ref|YP_182549.1| - 0.007 16.3 9.4 0.025 14.6 6.5 2.0 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|57640071|ref|YP_182549.1| - 0.0087 16.5 5.9 0.0087 16.5 4.1 3.6 4 0 0 4 4 3 1 4Fe-4S binding domain Fer4_11 PF13247.1 gi|57640071|ref|YP_182549.1| - 0.013 15.3 6.2 0.038 13.8 3.7 2.0 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|57640071|ref|YP_182549.1| - 0.069 13.5 9.1 2.9 8.3 0.8 3.8 4 0 0 4 4 3 0 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|57640071|ref|YP_182549.1| - 0.14 12.5 13.0 2.2e+02 2.3 9.0 2.7 1 1 0 1 1 1 0 4Fe-4S dicluster domain Transket_pyr PF02779.19 gi|57640071|ref|YP_182549.1| - 0.15 11.5 0.6 0.93 8.9 0.2 2.3 2 1 0 2 2 2 0 Transketolase, pyrimidine binding domain Fer4_15 PF13459.1 gi|57640071|ref|YP_182549.1| - 0.48 11.0 11.6 1.1 9.9 1.5 3.3 2 1 1 3 3 3 0 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|57640071|ref|YP_182549.1| - 0.95 9.8 10.8 2.5e+02 2.1 7.5 2.8 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|57640071|ref|YP_182549.1| - 1.6 9.3 19.0 0.76 10.2 1.0 2.8 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_16 PF13484.1 gi|57640071|ref|YP_182549.1| - 6.7 7.5 15.4 0.94 10.2 2.5 3.0 2 1 2 4 4 3 0 4Fe-4S double cluster binding domain PIN PF01850.16 gi|57640072|ref|YP_182550.1| - 1.4e-12 47.9 2.1 1.9e-12 47.5 1.5 1.1 1 0 0 1 1 1 1 PIN domain UPF0278 PF08745.6 gi|57640072|ref|YP_182550.1| - 0.00044 19.5 0.1 0.26 10.5 0.0 2.2 1 1 1 2 2 2 2 UPF0278 family eIF-3c_N PF05470.7 gi|57640072|ref|YP_182550.1| - 0.0068 14.5 0.0 0.0087 14.2 0.0 1.1 1 0 0 1 1 1 1 Eukaryotic translation initiation factor 3 subunit 8 N-terminus PIN_2 PF10130.4 gi|57640072|ref|YP_182550.1| - 0.013 15.5 0.6 0.024 14.6 0.4 1.4 1 1 0 1 1 1 0 PIN domain Mut7-C PF01927.11 gi|57640072|ref|YP_182550.1| - 0.028 14.4 0.0 0.038 13.9 0.0 1.3 1 0 0 1 1 1 0 Mut7-C RNAse domain Succ_CoA_lig PF13607.1 gi|57640074|ref|YP_182552.1| - 2.6e-55 185.8 1.2 5.6e-55 184.7 0.5 1.8 3 0 0 3 3 3 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.1 gi|57640074|ref|YP_182552.1| - 1.2e-27 96.4 0.3 2.4e-25 88.9 0.1 2.4 2 0 0 2 2 2 2 CoA binding domain CoA_binding PF02629.14 gi|57640074|ref|YP_182552.1| - 3.7e-19 69.0 4.0 3.7e-19 69.0 1.5 2.1 2 0 0 2 2 2 1 CoA binding domain GFO_IDH_MocA PF01408.17 gi|57640074|ref|YP_182552.1| - 0.035 14.6 0.0 2.9 8.4 0.0 3.0 2 1 1 3 3 3 0 Oxidoreductase family, NAD-binding Rossmann fold Arch_ATPase PF01637.13 gi|57640075|ref|YP_182553.1| - 4.3e-34 118.2 0.1 9.9e-34 117.0 0.0 1.6 1 0 0 1 1 1 1 Archaeal ATPase DUF234 PF03008.9 gi|57640075|ref|YP_182553.1| - 1.1e-31 108.8 1.5 2.1e-31 107.9 1.0 1.5 1 0 0 1 1 1 1 Archaea bacterial proteins of unknown function AAA_14 PF13173.1 gi|57640075|ref|YP_182553.1| - 1.3e-08 34.8 0.0 7.3e-08 32.3 0.0 2.2 2 0 0 2 2 2 1 AAA domain TrmB PF01978.14 gi|57640075|ref|YP_182553.1| - 6e-07 29.0 0.2 3.4e-06 26.6 0.0 2.2 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB AAA_22 PF13401.1 gi|57640075|ref|YP_182553.1| - 1.4e-05 25.2 0.0 4.4e-05 23.6 0.0 1.8 2 0 0 2 2 2 1 AAA domain HTH_45 PF14947.1 gi|57640075|ref|YP_182553.1| - 4.7e-05 23.1 0.0 0.00011 21.9 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_IclR PF09339.5 gi|57640075|ref|YP_182553.1| - 5.5e-05 22.6 0.0 0.00012 21.5 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain AAA_16 PF13191.1 gi|57640075|ref|YP_182553.1| - 0.0003 20.8 0.0 0.0081 16.1 0.0 2.3 1 1 0 2 2 2 1 AAA ATPase domain NDUF_B5 PF09781.4 gi|57640075|ref|YP_182553.1| - 0.07 12.3 0.0 0.12 11.6 0.0 1.3 1 0 0 1 1 1 0 NADH:ubiquinone oxidoreductase, NDUFB5/SGDH subunit PadR PF03551.9 gi|57640075|ref|YP_182553.1| - 0.1 12.3 0.0 0.48 10.2 0.0 2.2 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family Lactamase_B_3 PF13483.1 gi|57640076|ref|YP_182554.1| - 1.2e-33 116.1 0.0 1.5e-33 115.8 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.2 gi|57640076|ref|YP_182554.1| - 1.2e-18 67.4 0.1 1.5e-18 67.0 0.1 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|57640076|ref|YP_182554.1| - 1.2e-14 54.4 2.3 2.1e-14 53.6 1.6 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily CW_binding_2 PF04122.7 gi|57640077|ref|YP_182555.1| - 3.6e-22 78.3 0.0 9.9e-16 57.7 0.0 2.5 2 0 0 2 2 2 2 Putative cell wall binding repeat 2 MarR_2 PF12802.2 gi|57640077|ref|YP_182555.1| - 2.1e-07 30.4 0.1 6.5e-07 28.9 0.0 1.9 2 0 0 2 2 2 1 MarR family MarR PF01047.17 gi|57640077|ref|YP_182555.1| - 1.1e-06 28.2 0.1 2.3e-06 27.2 0.1 1.5 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|57640077|ref|YP_182555.1| - 2.4e-06 26.8 0.2 5.3e-06 25.7 0.1 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|57640077|ref|YP_182555.1| - 1.5e-05 24.6 0.4 3.5e-05 23.4 0.3 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Penicillinase_R PF03965.11 gi|57640077|ref|YP_182555.1| - 7.4e-05 22.8 0.4 0.00015 21.8 0.3 1.5 1 0 0 1 1 1 1 Penicillinase repressor HTH_27 PF13463.1 gi|57640077|ref|YP_182555.1| - 0.00013 22.2 0.1 0.00032 20.9 0.1 1.7 1 0 0 1 1 1 1 Winged helix DNA-binding domain GntR PF00392.16 gi|57640077|ref|YP_182555.1| - 0.00027 20.3 0.4 0.00073 18.9 0.1 1.9 2 0 0 2 2 1 1 Bacterial regulatory proteins, gntR family HTH_Crp_2 PF13545.1 gi|57640077|ref|YP_182555.1| - 0.00033 20.3 0.0 0.00083 19.0 0.0 1.7 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_IclR PF09339.5 gi|57640077|ref|YP_182555.1| - 0.00091 18.7 0.0 0.0018 17.8 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_36 PF13730.1 gi|57640077|ref|YP_182555.1| - 0.0044 17.1 0.0 0.016 15.3 0.0 2.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_DeoR PF08220.7 gi|57640077|ref|YP_182555.1| - 0.006 16.0 0.0 0.012 15.1 0.0 1.4 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain TFIIE_alpha PF02002.12 gi|57640077|ref|YP_182555.1| - 0.0091 15.4 0.1 0.019 14.4 0.0 1.5 1 0 0 1 1 1 1 TFIIE alpha subunit Fe_dep_repress PF01325.14 gi|57640077|ref|YP_182555.1| - 0.016 15.0 0.5 0.077 12.9 0.1 2.2 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain HTH_26 PF13443.1 gi|57640077|ref|YP_182555.1| - 0.02 15.0 0.0 2.1 8.6 0.0 2.6 2 0 0 2 2 2 0 Cro/C1-type HTH DNA-binding domain HTH_11 PF08279.7 gi|57640077|ref|YP_182555.1| - 0.022 14.4 0.1 0.058 13.0 0.1 1.7 1 0 0 1 1 1 0 HTH domain Peripla_BP_1 PF00532.16 gi|57640077|ref|YP_182555.1| - 0.032 13.4 0.0 0.059 12.5 0.0 1.4 1 0 0 1 1 1 0 Periplasmic binding proteins and sugar binding domain of LacI family LytR_C PF13399.1 gi|57640077|ref|YP_182555.1| - 0.042 14.2 0.0 3.7 7.9 0.0 2.5 2 0 0 2 2 2 0 LytR cell envelope-related transcriptional attenuator HTH_3 PF01381.17 gi|57640077|ref|YP_182555.1| - 0.05 13.4 0.1 0.21 11.4 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix DUF1323 PF07037.6 gi|57640077|ref|YP_182555.1| - 0.051 13.7 0.0 0.25 11.5 0.0 2.1 2 0 0 2 2 2 0 Putative transcription regulator (DUF1323) DUF4224 PF13986.1 gi|57640077|ref|YP_182555.1| - 0.083 12.4 0.2 0.86 9.2 0.1 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4224) Rrf2 PF02082.15 gi|57640077|ref|YP_182555.1| - 0.14 12.3 0.2 0.35 11.0 0.1 1.7 2 0 0 2 2 1 0 Transcriptional regulator Sigma70_r4 PF04545.11 gi|57640077|ref|YP_182555.1| - 0.21 10.9 1.0 0.46 9.8 0.3 1.8 2 0 0 2 2 2 0 Sigma-70, region 4 zf-C2H2 PF00096.21 gi|57640078|ref|YP_182556.1| - 1.2e-05 25.3 0.5 1.7e-05 24.8 0.4 1.2 1 0 0 1 1 1 1 Zinc finger, C2H2 type zf-C2H2_4 PF13894.1 gi|57640078|ref|YP_182556.1| - 1.4e-05 25.0 0.6 1.9e-05 24.6 0.4 1.2 1 0 0 1 1 1 1 C2H2-type zinc finger zf-C2H2_6 PF13912.1 gi|57640078|ref|YP_182556.1| - 0.00054 19.7 0.1 0.00069 19.4 0.1 1.2 1 0 0 1 1 1 1 C2H2-type zinc finger zf-FPG_IleRS PF06827.9 gi|57640078|ref|YP_182556.1| - 0.0056 16.2 0.1 0.0081 15.7 0.1 1.2 1 0 0 1 1 1 1 Zinc finger found in FPG and IleRS zinc_ribbon_5 PF13719.1 gi|57640078|ref|YP_182556.1| - 0.034 13.7 0.0 0.046 13.3 0.0 1.3 1 0 0 1 1 1 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|57640078|ref|YP_182556.1| - 0.035 13.9 0.0 0.035 13.9 0.0 1.2 1 0 0 1 1 1 0 Transposase zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|57640078|ref|YP_182556.1| - 0.047 13.3 0.0 0.065 12.9 0.0 1.3 1 0 0 1 1 1 0 zinc-ribbon domain zf-C2H2_jaz PF12171.3 gi|57640078|ref|YP_182556.1| - 0.068 13.3 0.1 0.084 13.0 0.1 1.2 1 0 0 1 1 1 0 Zinc-finger double-stranded RNA-binding zf-met PF12874.2 gi|57640078|ref|YP_182556.1| - 0.072 13.3 0.0 0.11 12.6 0.0 1.3 1 0 0 1 1 1 0 Zinc-finger of C2H2 type zf-Mss51 PF13824.1 gi|57640078|ref|YP_182556.1| - 0.09 12.6 0.0 0.098 12.5 0.0 1.3 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-C2H2_2 PF12756.2 gi|57640078|ref|YP_182556.1| - 0.091 12.8 0.0 0.091 12.8 0.0 1.1 1 0 0 1 1 1 0 C2H2 type zinc-finger (2 copies) DUF629 PF04780.7 gi|57640078|ref|YP_182556.1| - 0.13 10.7 0.0 0.13 10.7 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF629) HemN_C PF06969.11 gi|57640079|ref|YP_182557.1| - 0.0051 16.8 4.2 0.31 11.1 0.0 3.4 3 0 0 3 3 3 1 HemN C-terminal domain Phage_term_smal PF05944.7 gi|57640079|ref|YP_182557.1| - 0.028 14.0 0.1 0.046 13.4 0.1 1.3 1 0 0 1 1 1 0 Phage small terminase subunit Transcrip_reg PF01709.15 gi|57640079|ref|YP_182557.1| - 0.092 11.8 0.3 0.22 10.5 0.2 1.7 1 1 0 1 1 1 0 Transcriptional regulator DUF2857 PF11198.3 gi|57640079|ref|YP_182557.1| - 0.13 11.8 1.3 0.31 10.5 0.6 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF2857) Glucos_trans_II PF14264.1 gi|57640080|ref|YP_182558.1| - 0.01 14.8 0.1 0.014 14.4 0.1 1.1 1 0 0 1 1 1 0 Glucosyl transferase GtrII RDD PF06271.7 gi|57640080|ref|YP_182558.1| - 0.02 14.7 0.4 0.03 14.2 0.3 1.2 1 0 0 1 1 1 0 RDD family DUF2762 PF10960.3 gi|57640080|ref|YP_182558.1| - 0.2 11.3 1.3 0.65 9.7 0.3 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2762) UPF0104 PF03706.8 gi|57640081|ref|YP_182559.1| - 4.2e-11 42.6 27.7 7.1e-11 41.9 19.2 1.4 1 1 0 1 1 1 1 Uncharacterised protein family (UPF0104) SM-ATX PF14438.1 gi|57640081|ref|YP_182559.1| - 0.09 12.7 0.6 0.23 11.3 0.4 1.6 1 0 0 1 1 1 0 Ataxin 2 SM domain COX7a PF02238.10 gi|57640081|ref|YP_182559.1| - 5.8 6.7 6.0 4.8 6.9 0.0 3.1 3 0 0 3 3 3 0 Cytochrome c oxidase subunit VIIa Spermine_synth PF01564.12 gi|57640082|ref|YP_182560.1| - 8.7e-75 250.8 0.0 1.1e-74 250.4 0.0 1.0 1 0 0 1 1 1 1 Spermine/spermidine synthase Methyltransf_18 PF12847.2 gi|57640082|ref|YP_182560.1| - 0.00032 21.2 0.0 0.00062 20.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_30 PF05430.6 gi|57640082|ref|YP_182560.1| - 0.0045 16.6 0.0 0.0085 15.7 0.0 1.5 1 0 0 1 1 1 1 S-adenosyl-L-methionine-dependent methyltransferase Methyltransf_26 PF13659.1 gi|57640082|ref|YP_182560.1| - 0.011 15.8 0.0 0.018 15.0 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain PvlArgDC PF01862.11 gi|57640084|ref|YP_182562.1| - 3.9e-42 143.6 0.1 4.5e-42 143.4 0.1 1.0 1 0 0 1 1 1 1 Pyruvoyl-dependent arginine decarboxylase (PvlArgDC) GCV_H PF01597.14 gi|57640085|ref|YP_182563.1| - 1.1e-50 170.3 0.9 1.3e-50 170.1 0.6 1.0 1 0 0 1 1 1 1 Glycine cleavage H-protein Biotin_lipoyl PF00364.17 gi|57640085|ref|YP_182563.1| - 3.2e-08 33.0 0.7 7.1e-08 31.9 0.5 1.5 1 0 0 1 1 1 1 Biotin-requiring enzyme RnfC_N PF13375.1 gi|57640085|ref|YP_182563.1| - 0.00016 21.3 0.0 0.00018 21.1 0.0 1.3 1 0 0 1 1 1 1 RnfC Barrel sandwich hybrid domain Biotin_lipoyl_2 PF13533.1 gi|57640085|ref|YP_182563.1| - 0.0017 18.0 0.9 0.1 12.3 0.0 2.7 2 1 1 3 3 3 1 Biotin-lipoyl like DUF2118 PF09891.4 gi|57640085|ref|YP_182563.1| - 0.04 13.6 0.0 0.048 13.3 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2118) NQRA PF05896.6 gi|57640085|ref|YP_182563.1| - 0.068 12.3 0.1 0.089 11.9 0.0 1.2 1 0 0 1 1 1 0 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) PspC PF04024.7 gi|57640086|ref|YP_182564.1| - 7.4e-21 73.3 0.1 7.4e-21 73.3 0.1 2.2 2 1 0 2 2 2 1 PspC domain DUF872 PF05915.7 gi|57640086|ref|YP_182564.1| - 0.029 14.2 3.3 0.025 14.4 1.5 1.6 1 1 0 1 1 1 0 Eukaryotic protein of unknown function (DUF872) DUF3169 PF11368.3 gi|57640086|ref|YP_182564.1| - 0.036 13.2 0.1 0.049 12.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3169) Glucos_trans_II PF14264.1 gi|57640086|ref|YP_182564.1| - 0.062 12.2 2.3 0.57 9.1 1.7 1.9 1 1 0 1 1 1 0 Glucosyl transferase GtrII V_ATPase_I PF01496.14 gi|57640086|ref|YP_182564.1| - 0.12 10.2 0.4 0.21 9.3 0.2 1.4 1 1 0 1 1 1 0 V-type ATPase 116kDa subunit family NfeD PF01957.13 gi|57640086|ref|YP_182564.1| - 0.83 9.7 8.5 1.9 8.6 4.0 2.0 2 0 0 2 2 2 0 NfeD-like C-terminal, partner-binding DUF3185 PF11381.3 gi|57640086|ref|YP_182564.1| - 2 8.2 11.7 6.9 6.5 1.6 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF3185) DUF973 PF06157.6 gi|57640086|ref|YP_182564.1| - 3.1 6.6 9.5 0.22 10.4 3.4 1.4 2 0 0 2 2 2 0 Protein of unknown function (DUF973) PhaG_MnhG_YufB PF03334.9 gi|57640087|ref|YP_182565.1| - 0.22 11.6 5.7 4.4 7.4 1.0 2.0 1 1 1 2 2 2 0 Na+/H+ antiporter subunit DUF1625 PF07787.7 gi|57640087|ref|YP_182565.1| - 0.28 10.4 2.4 0.66 9.1 1.5 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF1625) DUF3784 PF12650.2 gi|57640087|ref|YP_182565.1| - 2.9 7.8 6.6 4.1 7.3 1.7 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF3784) COPI_assoc PF08507.5 gi|57640087|ref|YP_182565.1| - 3.3 7.4 6.3 52 3.5 4.3 2.0 1 1 0 1 1 1 0 COPI associated protein CitG PF01874.11 gi|57640088|ref|YP_182566.1| - 3.5e-58 196.9 0.0 4e-58 196.7 0.0 1.0 1 0 0 1 1 1 1 ATP:dephospho-CoA triphosphoribosyl transferase DUF1884 PF08967.5 gi|57640089|ref|YP_182567.1| - 3.2e-34 116.8 0.2 3.5e-34 116.7 0.1 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1884) DHH PF01368.15 gi|57640090|ref|YP_182568.1| - 3.3e-14 52.7 0.2 6.5e-14 51.7 0.0 1.6 2 0 0 2 2 2 1 DHH family S1 PF00575.18 gi|57640090|ref|YP_182568.1| - 2.8e-12 46.5 1.3 9.8e-12 44.7 0.9 2.0 1 0 0 1 1 1 1 S1 RNA binding domain tRNA_anti-codon PF01336.20 gi|57640090|ref|YP_182568.1| - 7.6e-12 44.9 0.3 2e-11 43.5 0.2 1.8 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain DnaJ_CXXCXGXG PF00684.14 gi|57640090|ref|YP_182568.1| - 4e-05 23.5 18.1 0.0023 17.9 1.0 2.9 2 1 1 3 3 3 3 DnaJ central domain Rep_fac-A_3 PF08661.6 gi|57640090|ref|YP_182568.1| - 0.01 15.7 0.0 0.022 14.6 0.0 1.5 1 0 0 1 1 1 0 Replication factor A protein 3 Cytochrom_c3_2 PF14537.1 gi|57640090|ref|YP_182568.1| - 0.023 15.0 0.4 0.061 13.6 0.3 1.7 1 0 0 1 1 1 0 Cytochrome c3 DUF1885 PF08968.5 gi|57640090|ref|YP_182568.1| - 0.046 13.4 0.0 0.11 12.1 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF1885) S1_2 PF13509.1 gi|57640090|ref|YP_182568.1| - 0.13 12.2 1.6 2.3 8.1 0.1 3.0 3 0 0 3 3 3 0 S1 domain PolC_DP2 PF03833.8 gi|57640090|ref|YP_182568.1| - 0.48 8.0 5.3 0.27 8.8 1.5 1.8 1 1 1 2 2 2 0 DNA polymerase II large subunit DP2 HypA PF01155.14 gi|57640090|ref|YP_182568.1| - 0.97 9.1 9.7 6.6 6.4 0.3 3.1 2 1 0 2 2 2 0 Hydrogenase expression/synthesis hypA family DUF1356 PF07092.7 gi|57640090|ref|YP_182568.1| - 1.2 8.2 9.1 0.75 8.9 1.1 3.0 1 1 0 2 2 2 0 Protein of unknown function (DUF1356) DUF4428 PF14471.1 gi|57640090|ref|YP_182568.1| - 5.4 6.8 7.7 0.62 9.8 1.5 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4428) MCPsignal PF00015.16 gi|57640091|ref|YP_182569.1| - 3.2e-41 141.2 48.8 2.7e-39 134.9 22.6 3.3 2 1 0 3 3 3 2 Methyl-accepting chemotaxis protein (MCP) signalling domain Cache_1 PF02743.13 gi|57640091|ref|YP_182569.1| - 9.4e-23 79.5 0.7 2.9e-22 77.9 0.5 1.9 1 0 0 1 1 1 1 Cache domain HAMP PF00672.20 gi|57640091|ref|YP_182569.1| - 4.5e-08 33.1 0.0 4.5e-08 33.1 0.0 5.1 4 1 2 6 6 5 1 HAMP domain Arfaptin PF06456.8 gi|57640091|ref|YP_182569.1| - 0.00015 21.1 9.1 0.00037 19.9 1.7 2.9 1 1 2 3 3 3 1 Arfaptin-like domain Cache_2 PF08269.6 gi|57640091|ref|YP_182569.1| - 0.00026 20.8 7.9 0.0038 17.1 0.0 3.7 3 0 0 3 3 3 1 Cache domain DUF948 PF06103.6 gi|57640091|ref|YP_182569.1| - 0.00066 19.4 24.3 0.063 13.1 0.2 5.8 4 2 1 6 6 5 2 Bacterial protein of unknown function (DUF948) NPV_P10 PF05531.7 gi|57640091|ref|YP_182569.1| - 0.0012 19.0 10.8 5.6 7.2 0.0 5.8 4 2 1 5 5 4 0 Nucleopolyhedrovirus P10 protein Syntaxin PF00804.20 gi|57640091|ref|YP_182569.1| - 0.0015 18.6 25.0 0.21 11.7 1.8 4.2 3 1 1 4 4 3 2 Syntaxin Sec8_exocyst PF04048.9 gi|57640091|ref|YP_182569.1| - 0.0025 17.4 1.0 0.0025 17.4 0.7 3.9 3 2 1 5 5 5 1 Sec8 exocyst complex component specific domain Sec5 PF15469.1 gi|57640091|ref|YP_182569.1| - 0.0029 17.3 0.7 0.0029 17.3 0.5 3.3 2 1 1 3 3 2 1 Exocyst complex component Sec5 Spc7 PF08317.6 gi|57640091|ref|YP_182569.1| - 0.0083 14.8 23.1 0.02 13.5 6.7 3.0 1 1 3 4 4 4 3 Spc7 kinetochore protein IFT20 PF14931.1 gi|57640091|ref|YP_182569.1| - 0.0085 15.9 8.7 0.0085 15.9 6.0 4.7 1 1 4 5 5 5 1 Intraflagellar transport complex B, subunit 20 DUF1664 PF07889.7 gi|57640091|ref|YP_182569.1| - 0.0097 15.7 24.4 0.05 13.4 2.5 5.2 3 2 2 5 5 5 1 Protein of unknown function (DUF1664) Cytochrom_B562 PF07361.6 gi|57640091|ref|YP_182569.1| - 0.016 15.5 19.1 1.6 9.1 0.0 5.4 2 1 4 6 6 6 0 Cytochrome b562 DUF3418 PF11898.3 gi|57640091|ref|YP_182569.1| - 0.084 11.2 9.6 0.036 12.4 4.6 1.7 1 1 1 2 2 2 0 Domain of unknown function (DUF3418) LXG PF04740.7 gi|57640091|ref|YP_182569.1| - 0.1 12.3 18.2 0.094 12.4 6.6 3.3 1 1 1 2 2 2 0 LXG domain of WXG superfamily Laminin_I PF06008.9 gi|57640091|ref|YP_182569.1| - 0.17 11.1 31.2 1.3 8.3 1.7 3.6 1 1 0 3 3 3 0 Laminin Domain I Fib_alpha PF08702.5 gi|57640091|ref|YP_182569.1| - 0.35 10.9 18.3 4.6 7.3 1.7 4.3 2 2 2 4 4 4 0 Fibrinogen alpha/beta chain family PilJ PF13675.1 gi|57640091|ref|YP_182569.1| - 0.42 10.9 14.1 0.23 11.7 3.8 3.7 2 1 1 3 3 3 0 Type IV pili methyl-accepting chemotaxis transducer N-term YjcZ PF13990.1 gi|57640091|ref|YP_182569.1| - 0.46 9.5 13.2 0.84 8.7 0.1 3.2 2 1 0 2 2 2 0 YjcZ-like protein AAA_13 PF13166.1 gi|57640091|ref|YP_182569.1| - 0.5 8.7 23.8 0.75 8.1 9.2 2.2 1 1 1 2 2 2 0 AAA domain Cache_3 PF14827.1 gi|57640091|ref|YP_182569.1| - 0.83 9.5 14.6 1.2 9.0 0.0 4.7 5 0 0 5 5 5 0 Sensory domain of two-component sensor kinase ISG65-75 PF11727.3 gi|57640091|ref|YP_182569.1| - 1.2 8.1 22.3 1.9 7.4 0.8 3.0 1 1 3 4 4 4 0 Invariant surface glycoprotein Laminin_II PF06009.7 gi|57640091|ref|YP_182569.1| - 1.4 8.6 30.8 0.27 10.9 4.9 4.9 2 1 3 6 6 5 0 Laminin Domain II Vps53_N PF04100.7 gi|57640091|ref|YP_182569.1| - 1.8 7.2 23.1 0.45 9.2 3.4 3.2 2 2 1 3 3 3 0 Vps53-like, N-terminal SNARE PF05739.14 gi|57640091|ref|YP_182569.1| - 1.8 8.3 20.9 3.8 7.2 0.5 5.3 4 2 1 5 5 5 0 SNARE domain Med30 PF11315.3 gi|57640091|ref|YP_182569.1| - 1.8 8.6 13.7 0.15 12.1 3.9 2.7 2 1 1 3 3 3 0 Mediator complex subunit 30 DUF2422 PF10337.4 gi|57640091|ref|YP_182569.1| - 1.9 7.2 9.9 1.2 7.8 1.8 2.6 1 1 1 2 2 2 0 Protein of unknown function (DUF2422) CorA PF01544.13 gi|57640091|ref|YP_182569.1| - 2.5 7.0 14.8 0.093 11.7 0.9 3.2 1 1 1 3 3 3 0 CorA-like Mg2+ transporter protein Prominin PF05478.6 gi|57640091|ref|YP_182569.1| - 2.7 5.3 16.5 2.1 5.7 4.4 2.7 1 1 2 3 3 3 0 Prominin Syntaxin-6_N PF09177.6 gi|57640091|ref|YP_182569.1| - 6.7 7.1 24.1 9.8 6.6 3.8 4.5 1 1 2 4 4 4 0 Syntaxin 6, N-terminal HisKA_3 PF07730.8 gi|57640091|ref|YP_182569.1| - 9.4 6.6 26.6 5.1 7.5 0.1 6.7 3 3 2 5 5 5 0 Histidine kinase Xan_ur_permease PF00860.15 gi|57640092|ref|YP_182570.1| - 1.1e-38 132.7 36.2 2.5e-37 128.2 25.1 2.1 1 1 0 1 1 1 1 Permease family DUF1435 PF07256.7 gi|57640092|ref|YP_182570.1| - 0.11 12.4 2.1 2.6 8.1 0.1 2.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1435) ABC_tran PF00005.22 gi|57640093|ref|YP_182571.1| - 8.9e-37 126.4 0.0 1.6e-36 125.5 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|57640093|ref|YP_182571.1| - 1.6e-10 41.4 0.0 5e-06 26.6 0.0 2.3 1 1 1 2 2 2 2 AAA domain AAA PF00004.24 gi|57640093|ref|YP_182571.1| - 0.0022 18.1 0.6 0.014 15.5 0.4 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|57640093|ref|YP_182571.1| - 0.0029 17.7 0.1 0.027 14.5 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|57640093|ref|YP_182571.1| - 0.0039 17.2 0.0 0.0068 16.4 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_15 PF13175.1 gi|57640093|ref|YP_182571.1| - 0.0039 16.2 0.0 0.14 11.1 0.0 2.1 1 1 1 2 2 2 1 AAA ATPase domain SMC_N PF02463.14 gi|57640093|ref|YP_182571.1| - 0.0044 16.2 0.0 0.068 12.3 0.0 2.0 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain Rad17 PF03215.10 gi|57640093|ref|YP_182571.1| - 0.0087 14.7 0.0 0.012 14.3 0.0 1.1 1 0 0 1 1 1 1 Rad17 cell cycle checkpoint protein Arch_ATPase PF01637.13 gi|57640093|ref|YP_182571.1| - 0.028 14.1 0.0 0.042 13.5 0.0 1.3 1 0 0 1 1 1 0 Archaeal ATPase AAA_29 PF13555.1 gi|57640093|ref|YP_182571.1| - 0.047 13.2 0.0 0.084 12.4 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_19 PF13245.1 gi|57640093|ref|YP_182571.1| - 0.048 13.4 0.0 0.11 12.2 0.0 1.5 1 0 0 1 1 1 0 Part of AAA domain AAA_23 PF13476.1 gi|57640093|ref|YP_182571.1| - 0.078 13.2 0.2 0.2 11.9 0.1 1.8 1 1 0 1 1 1 0 AAA domain Herpes_U59 PF04529.7 gi|57640093|ref|YP_182571.1| - 0.082 11.7 0.0 0.12 11.1 0.0 1.1 1 0 0 1 1 1 0 Herpesvirus U59 protein AAA_25 PF13481.1 gi|57640093|ref|YP_182571.1| - 0.086 12.2 0.0 1.5 8.1 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.1 gi|57640093|ref|YP_182571.1| - 0.099 12.9 0.0 0.21 11.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|57640093|ref|YP_182571.1| - 0.1 12.5 0.0 0.24 11.3 0.0 1.7 1 0 0 1 1 1 0 AAA domain BPD_transp_1 PF00528.17 gi|57640094|ref|YP_182572.1| - 3e-28 98.5 39.9 1.4e-15 57.2 10.7 3.4 3 1 0 3 3 3 2 Binding-protein-dependent transport system inner membrane component Peptidase_S58 PF03576.9 gi|57640095|ref|YP_182573.1| - 8.9e-116 386.6 0.3 1e-115 386.4 0.2 1.0 1 0 0 1 1 1 1 Peptidase family S58 ABC_tran PF00005.22 gi|57640096|ref|YP_182574.1| - 1.5e-21 77.1 0.0 1.9e-21 76.8 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|57640096|ref|YP_182574.1| - 2.4e-10 40.8 0.1 6.1e-05 23.1 0.0 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|57640096|ref|YP_182574.1| - 1.9e-05 24.0 0.0 0.0029 16.8 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|57640096|ref|YP_182574.1| - 2.4e-05 24.7 0.0 3.2e-05 24.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|57640096|ref|YP_182574.1| - 0.001 18.5 0.1 0.0018 17.7 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain MutS_V PF00488.16 gi|57640096|ref|YP_182574.1| - 0.023 14.0 0.0 0.038 13.3 0.0 1.3 1 0 0 1 1 1 0 MutS domain V AAA_25 PF13481.1 gi|57640096|ref|YP_182574.1| - 0.047 13.0 0.0 0.092 12.1 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|57640096|ref|YP_182574.1| - 0.048 13.2 0.0 0.076 12.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|57640096|ref|YP_182574.1| - 0.052 12.9 0.2 0.082 12.3 0.1 1.3 1 0 0 1 1 1 0 AAA-like domain AAA_22 PF13401.1 gi|57640096|ref|YP_182574.1| - 0.14 12.3 0.1 0.18 11.9 0.0 1.5 1 1 0 1 1 1 0 AAA domain AAA_15 PF13175.1 gi|57640096|ref|YP_182574.1| - 0.17 10.8 0.0 6.2 5.7 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain ABC2_membrane_4 PF12730.2 gi|57640098|ref|YP_182576.1| - 1.6e-10 40.5 22.8 3.1e-10 39.6 15.8 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|57640098|ref|YP_182576.1| - 6.8e-06 25.5 7.0 6.8e-06 25.5 4.8 2.7 3 1 0 3 3 3 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|57640098|ref|YP_182576.1| - 3.5e-05 22.7 18.1 6.2e-05 21.9 12.5 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein PufQ PF05398.6 gi|57640098|ref|YP_182576.1| - 0.019 14.9 0.8 3.9 7.5 0.1 2.6 2 0 0 2 2 2 0 PufQ cytochrome subunit ABC2_membrane_3 PF12698.2 gi|57640098|ref|YP_182576.1| - 0.17 10.8 18.0 0.0061 15.6 7.8 1.8 1 1 1 2 2 2 0 ABC-2 family transporter protein PEGA PF08308.6 gi|57640099|ref|YP_182577.1| - 1.3e-26 92.1 6.5 2.7e-16 59.0 0.1 4.9 3 2 1 4 4 4 4 PEGA domain CarboxypepD_reg PF13620.1 gi|57640099|ref|YP_182577.1| - 2.1e-05 24.4 6.8 0.0032 17.4 0.0 4.7 5 0 0 5 5 5 1 Carboxypeptidase regulatory-like domain DUF4493 PF14900.1 gi|57640099|ref|YP_182577.1| - 0.0001 22.0 6.2 0.073 12.6 0.0 3.9 4 0 0 4 4 4 2 Domain of unknown function (DUF4493) Wzt_C PF14524.1 gi|57640099|ref|YP_182577.1| - 0.009 15.7 0.1 1.7 8.3 0.0 3.9 4 0 0 4 4 4 1 Wzt C-terminal domain DUF4399 PF14347.1 gi|57640099|ref|YP_182577.1| - 0.011 15.7 0.0 4.4 7.3 0.0 3.5 4 0 0 4 4 4 0 Domain of unknown function (DUF4399) Radical_SAM PF04055.16 gi|57640102|ref|YP_182580.1| - 3.9e-15 56.4 0.0 9.1e-15 55.2 0.0 1.7 2 0 0 2 2 2 1 Radical SAM superfamily B12-binding PF02310.14 gi|57640102|ref|YP_182580.1| - 0.0033 17.2 0.0 0.012 15.4 0.0 2.0 1 1 0 1 1 1 1 B12 binding domain AsnC_trans_reg PF01037.16 gi|57640103|ref|YP_182581.1| - 5.3e-10 38.8 0.1 6.2e-10 38.6 0.1 1.1 1 0 0 1 1 1 1 AsnC family MarR PF01047.17 gi|57640104|ref|YP_182582.1| - 1.6e-07 30.8 0.0 4.1e-07 29.6 0.0 1.7 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|57640104|ref|YP_182582.1| - 3.2e-07 29.9 3.4 1.8e-06 27.5 0.1 2.5 2 1 1 3 3 3 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|57640104|ref|YP_182582.1| - 9.7e-07 28.2 0.1 1.8e-05 24.2 0.0 2.5 3 0 0 3 3 3 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|57640104|ref|YP_182582.1| - 2.5e-06 27.0 0.0 7.2e-06 25.5 0.0 1.8 2 0 0 2 2 2 1 MarR family HTH_27 PF13463.1 gi|57640104|ref|YP_182582.1| - 2.8e-06 27.5 0.1 5.8e-05 23.3 0.0 2.2 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_24 PF13412.1 gi|57640104|ref|YP_182582.1| - 3.1e-06 26.4 0.2 2.1e-05 23.8 0.0 2.5 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|57640104|ref|YP_182582.1| - 5.7e-05 22.7 0.8 0.00044 19.8 0.0 2.5 3 0 0 3 3 3 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|57640104|ref|YP_182582.1| - 0.00011 21.8 0.2 0.0013 18.4 0.0 2.5 2 1 1 3 3 3 1 Helix-turn-helix domain DUF4423 PF14394.1 gi|57640104|ref|YP_182582.1| - 0.0024 17.4 1.8 0.073 12.6 0.0 2.9 1 1 2 3 3 3 1 Domain of unknown function (DUF4423) Sigma70_r4 PF04545.11 gi|57640104|ref|YP_182582.1| - 0.0054 16.0 0.4 0.054 12.8 0.0 2.6 3 1 0 3 3 3 1 Sigma-70, region 4 HTH_36 PF13730.1 gi|57640104|ref|YP_182582.1| - 0.0071 16.4 0.1 0.68 10.1 0.0 2.7 2 0 0 2 2 2 1 Helix-turn-helix domain Rrf2 PF02082.15 gi|57640104|ref|YP_182582.1| - 0.013 15.6 0.0 0.041 14.0 0.0 1.8 2 1 0 2 2 2 0 Transcriptional regulator Gluconate_2-dh3 PF13618.1 gi|57640104|ref|YP_182582.1| - 0.014 15.4 0.1 0.019 15.1 0.1 1.2 1 0 0 1 1 1 0 Gluconate 2-dehydrogenase subunit 3 HTH_11 PF08279.7 gi|57640104|ref|YP_182582.1| - 0.036 13.7 0.4 0.39 10.4 0.0 2.6 2 1 0 2 2 2 0 HTH domain HTH_AraC PF00165.18 gi|57640104|ref|YP_182582.1| - 0.055 13.3 0.0 0.14 12.0 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix proteins, AraC family GntR PF00392.16 gi|57640104|ref|YP_182582.1| - 0.07 12.5 0.3 0.67 9.4 0.0 2.5 2 1 0 2 2 2 0 Bacterial regulatory proteins, gntR family HTH_38 PF13936.1 gi|57640104|ref|YP_182582.1| - 0.08 12.5 0.1 8.9 5.9 0.3 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain VHS PF00790.14 gi|57640104|ref|YP_182582.1| - 0.11 12.1 0.0 0.26 10.9 0.0 1.5 1 0 0 1 1 1 0 VHS domain DUF3213 PF11491.3 gi|57640104|ref|YP_182582.1| - 0.13 12.1 2.1 0.43 10.4 1.1 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3213) DUF2250 PF10007.4 gi|57640104|ref|YP_182582.1| - 0.37 10.7 2.9 0.64 9.9 0.1 2.3 1 1 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) AP_endonuc_2 PF01261.19 gi|57640105|ref|YP_182583.1| - 1.3e-19 70.3 0.0 1.7e-19 69.9 0.0 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel DUF2345 PF10106.4 gi|57640105|ref|YP_182583.1| - 0.016 14.7 0.0 0.031 13.8 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2345) PAH PF02671.16 gi|57640105|ref|YP_182583.1| - 0.052 13.1 0.1 0.88 9.2 0.0 2.3 2 0 0 2 2 2 0 Paired amphipathic helix repeat DeoC PF01791.4 gi|57640105|ref|YP_182583.1| - 0.057 12.7 0.0 0.074 12.3 0.0 1.1 1 0 0 1 1 1 0 DeoC/LacD family aldolase IncA PF04156.9 gi|57640106|ref|YP_182584.1| - 0.17 11.4 51.1 0.6 9.6 10.5 4.0 1 1 2 3 3 3 0 IncA protein Mnd1 PF03962.10 gi|57640106|ref|YP_182584.1| - 0.26 10.9 31.1 0.13 11.8 4.4 3.2 3 0 0 3 3 3 0 Mnd1 family Filament PF00038.16 gi|57640106|ref|YP_182584.1| - 0.89 8.9 40.6 0.037 13.5 7.0 2.3 2 1 0 2 2 2 0 Intermediate filament protein Baculo_PEP_C PF04513.7 gi|57640106|ref|YP_182584.1| - 0.94 9.3 9.9 4.5 7.0 1.3 3.6 3 2 0 3 3 3 0 Baculovirus polyhedron envelope protein, PEP, C terminus Atg14 PF10186.4 gi|57640106|ref|YP_182584.1| - 1 8.2 34.4 0.025 13.5 6.8 3.0 3 0 0 3 3 3 0 UV radiation resistance protein and autophagy-related subunit 14 APG6 PF04111.7 gi|57640106|ref|YP_182584.1| - 1.2 8.1 38.6 0.22 10.5 6.3 3.1 3 0 0 3 3 3 0 Autophagy protein Apg6 NPV_P10 PF05531.7 gi|57640106|ref|YP_182584.1| - 1.3 9.3 14.2 15 5.9 0.5 5.2 2 2 1 3 3 3 0 Nucleopolyhedrovirus P10 protein Reo_sigmaC PF04582.7 gi|57640106|ref|YP_182584.1| - 1.4 8.0 3.9 7.4 5.6 0.2 2.2 1 1 0 2 2 2 0 Reovirus sigma C capsid protein Synaptobrevin PF00957.16 gi|57640106|ref|YP_182584.1| - 1.4 8.5 5.7 0.88 9.2 1.4 2.6 2 0 0 2 2 2 0 Synaptobrevin Allexi_40kDa PF05549.6 gi|57640106|ref|YP_182584.1| - 2.6 7.2 13.7 1.2 8.3 1.4 2.8 3 0 0 3 3 3 0 Allexivirus 40kDa protein CENP-F_leu_zip PF10473.4 gi|57640106|ref|YP_182584.1| - 4.4 7.1 53.0 0.2 11.4 11.6 3.6 3 1 0 3 3 3 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF2203 PF09969.4 gi|57640106|ref|YP_182584.1| - 5.3 7.2 22.7 6.5 6.9 2.0 3.7 3 1 0 3 3 3 0 Uncharacterized conserved protein (DUF2203) FliJ PF02050.11 gi|57640106|ref|YP_182584.1| - 5.7 7.0 31.8 3.4 7.7 5.5 3.7 3 1 0 3 3 3 0 Flagellar FliJ protein DUF373 PF04123.8 gi|57640107|ref|YP_182585.1| - 1.9e-112 375.7 12.2 2.2e-112 375.4 8.4 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF373) DUF77 PF01910.12 gi|57640108|ref|YP_182586.1| - 2.5e-33 113.6 1.1 2.8e-33 113.4 0.8 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF77 DeoC PF01791.4 gi|57640108|ref|YP_182586.1| - 0.03 13.6 0.1 0.034 13.4 0.1 1.1 1 0 0 1 1 1 0 DeoC/LacD family aldolase NIF PF03031.13 gi|57640108|ref|YP_182586.1| - 0.031 13.9 0.0 0.035 13.7 0.0 1.1 1 0 0 1 1 1 0 NLI interacting factor-like phosphatase HGTP_anticodon PF03129.15 gi|57640108|ref|YP_182586.1| - 0.22 11.4 1.6 2.1 8.3 1.1 2.1 1 1 0 1 1 1 0 Anticodon binding domain AMMECR1 PF01871.12 gi|57640109|ref|YP_182587.1| - 1.3e-62 209.9 0.0 1.5e-62 209.7 0.0 1.0 1 0 0 1 1 1 1 AMMECR1 TYW3 PF02676.9 gi|57640110|ref|YP_182588.1| - 1.6e-60 203.8 0.1 1.7e-60 203.6 0.0 1.0 1 0 0 1 1 1 1 Methyltransferase TYW3 PIN PF01850.16 gi|57640111|ref|YP_182589.1| - 5.4e-08 33.1 0.3 5.6e-07 29.9 0.2 2.2 1 1 0 1 1 1 1 PIN domain Spore_IV_A PF09547.5 gi|57640112|ref|YP_182590.1| - 0.013 14.2 0.3 0.015 13.9 0.2 1.0 1 0 0 1 1 1 0 Stage IV sporulation protein A (spore_IV_A) AAA_12 PF13087.1 gi|57640113|ref|YP_182591.1| - 1.9e-58 197.1 0.0 2.8e-58 196.5 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_11 PF13086.1 gi|57640113|ref|YP_182591.1| - 1.2e-53 182.1 0.0 2.7e-53 180.9 0.0 1.6 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.1 gi|57640113|ref|YP_182591.1| - 1.8e-11 43.9 0.5 5.4e-08 32.6 0.0 3.0 3 0 0 3 3 3 2 AAA domain AAA_19 PF13245.1 gi|57640113|ref|YP_182591.1| - 1.1e-10 41.0 0.3 2.8e-10 39.7 0.2 1.7 1 0 0 1 1 1 1 Part of AAA domain Viral_helicase1 PF01443.13 gi|57640113|ref|YP_182591.1| - 1.3e-07 31.3 0.0 0.039 13.4 0.0 3.2 3 0 0 3 3 3 3 Viral (Superfamily 1) RNA helicase PIF1 PF05970.9 gi|57640113|ref|YP_182591.1| - 1.6e-05 24.0 0.0 0.00043 19.3 0.0 2.2 2 0 0 2 2 2 1 PIF1-like helicase AAA_16 PF13191.1 gi|57640113|ref|YP_182591.1| - 0.0015 18.5 0.4 0.0063 16.5 0.3 2.2 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|57640113|ref|YP_182591.1| - 0.0064 16.6 0.2 0.086 12.9 0.0 2.6 1 1 1 2 2 2 1 AAA domain UvrD-helicase PF00580.16 gi|57640113|ref|YP_182591.1| - 0.014 14.6 0.2 0.057 12.7 0.0 1.8 1 1 0 1 1 1 0 UvrD/REP helicase N-terminal domain Helicase_RecD PF05127.9 gi|57640113|ref|YP_182591.1| - 0.019 14.5 0.3 1.6 8.3 0.0 2.4 2 0 0 2 2 2 0 Helicase TrwB_AAD_bind PF10412.4 gi|57640113|ref|YP_182591.1| - 0.023 13.3 0.0 0.039 12.5 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain Flavi_DEAD PF07652.9 gi|57640113|ref|YP_182591.1| - 0.062 13.0 0.2 1.3 8.7 0.0 2.2 2 0 0 2 2 2 0 Flavivirus DEAD domain DEAD PF00270.24 gi|57640113|ref|YP_182591.1| - 0.069 12.6 0.2 0.23 10.9 0.0 1.9 2 0 0 2 2 2 0 DEAD/DEAH box helicase DUF35 PF01796.12 gi|57640114|ref|YP_182592.1| - 2.4e-19 69.3 0.1 3.2e-19 68.9 0.1 1.2 1 0 0 1 1 1 1 DUF35 OB-fold domain DUF35_N PF12172.3 gi|57640114|ref|YP_182592.1| - 5.3e-09 35.7 0.3 8.8e-09 35.0 0.2 1.4 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) Zn_Tnp_IS1595 PF12760.2 gi|57640114|ref|YP_182592.1| - 0.0021 17.8 0.1 0.0036 17.0 0.0 1.4 1 0 0 1 1 1 1 Transposase zinc-ribbon domain SoxD PF04267.7 gi|57640114|ref|YP_182592.1| - 0.044 13.6 0.0 0.094 12.5 0.0 1.5 1 0 0 1 1 1 0 Sarcosine oxidase, delta subunit family Thiolase_C PF02803.13 gi|57640115|ref|YP_182593.1| - 1.1e-11 44.2 0.6 3.9e-11 42.4 0.4 2.0 1 1 0 1 1 1 1 Thiolase, C-terminal domain Thiolase_N PF00108.18 gi|57640115|ref|YP_182593.1| - 2.1e-10 40.0 1.1 2.1e-09 36.7 0.1 2.2 2 0 0 2 2 2 1 Thiolase, N-terminal domain Ketoacyl-synt_C PF02801.17 gi|57640115|ref|YP_182593.1| - 0.0054 16.5 5.4 0.05 13.4 0.3 3.6 3 1 0 3 3 3 1 Beta-ketoacyl synthase, C-terminal domain ACP_syn_III PF08545.5 gi|57640115|ref|YP_182593.1| - 0.024 14.2 1.5 2.5 7.8 0.2 2.4 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ketoacyl-synt PF00109.21 gi|57640115|ref|YP_182593.1| - 0.055 12.9 6.7 0.034 13.6 1.5 2.4 2 1 1 3 3 3 0 Beta-ketoacyl synthase, N-terminal domain ACP_syn_III_C PF08541.5 gi|57640116|ref|YP_182594.1| - 1.6e-10 40.8 0.2 1e-09 38.2 0.0 2.2 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ACP_syn_III PF08545.5 gi|57640116|ref|YP_182594.1| - 1.3e-05 24.7 3.1 9.8e-05 21.9 0.4 2.4 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III HMG_CoA_synt_C PF08540.5 gi|57640116|ref|YP_182594.1| - 0.00061 19.3 0.1 0.037 13.5 0.0 2.1 1 1 1 2 2 2 2 Hydroxymethylglutaryl-coenzyme A synthase C terminal HMG_CoA_synt_N PF01154.12 gi|57640116|ref|YP_182594.1| - 0.0014 18.2 0.0 0.0025 17.3 0.0 1.5 1 1 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A synthase N terminal PTCRA PF15028.1 gi|57640116|ref|YP_182594.1| - 0.087 12.3 0.1 0.15 11.6 0.0 1.3 1 0 0 1 1 1 0 Pre-T-cell antigen receptor AIM24 PF01987.12 gi|57640117|ref|YP_182595.1| - 1.1e-67 227.7 0.5 1.2e-67 227.5 0.3 1.0 1 0 0 1 1 1 1 Mitochondrial biogenesis AIM24 Fibrillarin PF01269.12 gi|57640118|ref|YP_182596.1| - 1.7e-97 324.8 0.0 2e-97 324.6 0.0 1.0 1 0 0 1 1 1 1 Fibrillarin PCMT PF01135.14 gi|57640118|ref|YP_182596.1| - 3.5e-07 29.9 0.0 4.4e-07 29.6 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) GCD14 PF08704.5 gi|57640118|ref|YP_182596.1| - 0.00035 20.1 0.0 0.00052 19.5 0.0 1.2 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit FtsJ PF01728.14 gi|57640118|ref|YP_182596.1| - 0.054 13.4 0.0 0.088 12.7 0.0 1.4 1 1 0 1 1 1 0 FtsJ-like methyltransferase Nop PF01798.13 gi|57640119|ref|YP_182597.1| - 2.2e-59 199.0 0.3 3.3e-59 198.5 0.2 1.2 1 0 0 1 1 1 1 Putative snoRNA binding domain NOSIC PF08060.8 gi|57640119|ref|YP_182597.1| - 5.3e-24 83.7 0.8 8.4e-24 83.1 0.0 1.8 2 0 0 2 2 2 1 NOSIC (NUC001) domain FliT PF05400.8 gi|57640119|ref|YP_182597.1| - 0.0089 16.4 1.5 0.068 13.5 0.2 2.6 2 0 0 2 2 2 1 Flagellar protein FliT V_ATPase_I PF01496.14 gi|57640119|ref|YP_182597.1| - 0.16 9.7 1.0 0.82 7.4 0.0 2.2 3 0 0 3 3 3 0 V-type ATPase 116kDa subunit family IF-2B PF01008.12 gi|57640120|ref|YP_182598.1| - 3.9e-93 311.5 0.3 4.5e-93 311.3 0.2 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family Aminotran_1_2 PF00155.16 gi|57640121|ref|YP_182599.1| - 1.2e-38 132.9 0.0 1.4e-38 132.8 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_MocR PF12897.2 gi|57640121|ref|YP_182599.1| - 3.2e-17 62.2 0.0 4.6e-17 61.6 0.0 1.1 1 0 0 1 1 1 1 Alanine-glyoxylate amino-transferase Beta_elim_lyase PF01212.16 gi|57640121|ref|YP_182599.1| - 0.064 12.3 0.0 0.098 11.7 0.0 1.2 1 0 0 1 1 1 0 Beta-eliminating lyase Peptidase_C26 PF07722.8 gi|57640122|ref|YP_182600.1| - 8.1e-51 172.5 0.0 1.3e-50 171.9 0.0 1.3 1 0 0 1 1 1 1 Peptidase C26 GATase PF00117.23 gi|57640122|ref|YP_182600.1| - 2.7e-09 36.7 0.0 4.9e-09 35.9 0.0 1.5 1 1 0 1 1 1 1 Glutamine amidotransferase class-I Radical_SAM PF04055.16 gi|57640123|ref|YP_182601.1| - 1.3e-16 61.2 0.3 2.2e-16 60.4 0.0 1.5 2 0 0 2 2 2 1 Radical SAM superfamily DUF1848 PF08902.6 gi|57640123|ref|YP_182601.1| - 0.0047 16.5 5.0 0.66 9.4 3.0 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF1848) Fer4_12 PF13353.1 gi|57640123|ref|YP_182601.1| - 0.033 14.2 0.0 0.097 12.7 0.0 1.8 2 0 0 2 2 2 0 4Fe-4S single cluster domain OsmC PF02566.14 gi|57640124|ref|YP_182602.1| - 1.5e-17 63.6 0.0 1.9e-17 63.3 0.0 1.1 1 0 0 1 1 1 1 OsmC-like protein GATase PF00117.23 gi|57640125|ref|YP_182603.1| - 1.4e-47 161.6 0.0 1.5e-47 161.5 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|57640125|ref|YP_182603.1| - 1.8e-14 53.7 0.0 9.3e-14 51.3 0.0 2.1 1 1 0 1 1 1 1 Peptidase C26 GST_N_2 PF13409.1 gi|57640125|ref|YP_182603.1| - 0.07 13.1 0.0 0.17 11.9 0.0 1.6 2 0 0 2 2 2 0 Glutathione S-transferase, N-terminal domain PIN PF01850.16 gi|57640126|ref|YP_182604.1| - 3e-10 40.4 0.4 5.9e-10 39.5 0.3 1.5 1 1 0 1 1 1 1 PIN domain PIN_4 PF13638.1 gi|57640126|ref|YP_182604.1| - 0.0084 16.2 0.0 0.041 13.9 0.0 1.9 2 0 0 2 2 2 1 PIN domain cIII PF08134.6 gi|57640126|ref|YP_182604.1| - 0.061 12.9 0.4 0.26 10.9 0.0 2.2 3 0 0 3 3 3 0 cIII protein family DUF104 PF01954.11 gi|57640127|ref|YP_182605.1| - 8.5e-19 67.3 6.0 1.1e-18 67.0 4.1 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF104 GMP_synt_C PF00958.17 gi|57640128|ref|YP_182606.1| - 1e-34 118.1 0.0 2.2e-34 117.0 0.0 1.5 1 0 0 1 1 1 1 GMP synthase C terminal domain NAD_synthase PF02540.12 gi|57640128|ref|YP_182606.1| - 5.1e-14 51.7 0.0 1.3e-06 27.5 0.0 2.3 2 0 0 2 2 2 2 NAD synthase Asn_synthase PF00733.16 gi|57640128|ref|YP_182606.1| - 9.4e-06 25.2 0.0 1.8e-05 24.3 0.0 1.4 1 0 0 1 1 1 1 Asparagine synthase ThiI PF02568.9 gi|57640128|ref|YP_182606.1| - 1e-05 25.1 0.0 2.3e-05 23.9 0.0 1.6 1 1 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) QueC PF06508.8 gi|57640128|ref|YP_182606.1| - 1.4e-05 24.4 0.0 0.0019 17.5 0.0 2.2 1 1 0 1 1 1 1 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.11 gi|57640128|ref|YP_182606.1| - 1.7e-05 23.5 0.1 0.0055 15.3 0.0 2.2 2 0 0 2 2 2 2 tRNA methyl transferase ATP_bind_3 PF01171.15 gi|57640128|ref|YP_182606.1| - 0.0025 17.3 0.0 0.0046 16.4 0.0 1.4 1 0 0 1 1 1 1 PP-loop family PAPS_reduct PF01507.14 gi|57640128|ref|YP_182606.1| - 0.034 13.9 0.0 0.061 13.1 0.0 1.4 1 0 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family IMPDH PF00478.20 gi|57640129|ref|YP_182607.1| - 4.1e-138 460.0 7.0 4.7e-138 459.8 4.8 1.0 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain CBS PF00571.23 gi|57640129|ref|YP_182607.1| - 1.1e-33 114.7 4.0 1.2e-17 63.3 0.4 2.7 2 0 0 2 2 2 2 CBS domain NMO PF03060.10 gi|57640129|ref|YP_182607.1| - 9.5e-10 38.1 11.0 3.8e-07 29.5 7.6 3.0 1 1 0 1 1 1 1 Nitronate monooxygenase FMN_dh PF01070.13 gi|57640129|ref|YP_182607.1| - 8.4e-08 31.4 7.5 3.4e-07 29.4 4.6 2.3 3 1 0 3 3 3 1 FMN-dependent dehydrogenase His_biosynth PF00977.16 gi|57640129|ref|YP_182607.1| - 1.4e-05 24.4 4.1 6.5e-05 22.2 2.8 2.0 1 1 0 1 1 1 1 Histidine biosynthesis protein Glu_synthase PF01645.12 gi|57640129|ref|YP_182607.1| - 4.3e-05 22.6 4.1 7.9e-05 21.7 2.8 1.4 1 0 0 1 1 1 1 Conserved region in glutamate synthase DHO_dh PF01180.16 gi|57640129|ref|YP_182607.1| - 0.019 13.9 0.9 0.041 12.8 0.6 1.6 1 0 0 1 1 1 0 Dihydroorotate dehydrogenase DEDD_Tnp_IS110 PF01548.12 gi|57640129|ref|YP_182607.1| - 0.083 12.5 0.7 0.21 11.2 0.5 1.6 1 0 0 1 1 1 0 Transposase PRC PF05239.11 gi|57640129|ref|YP_182607.1| - 0.17 11.7 4.8 5.6 6.8 0.6 2.9 2 1 0 2 2 2 0 PRC-barrel domain ThiG PF05690.9 gi|57640129|ref|YP_182607.1| - 0.2 10.7 10.9 0.03 13.4 1.5 3.0 2 1 1 3 3 3 0 Thiazole biosynthesis protein ThiG PcrB PF01884.12 gi|57640129|ref|YP_182607.1| - 0.32 10.2 11.4 0.55 9.4 0.9 3.0 3 1 0 3 3 3 0 PcrB family DUF835 PF05763.7 gi|57640130|ref|YP_182608.1| - 7.8e-36 122.6 0.0 1.1e-35 122.1 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF835) DUF1297 PF06973.7 gi|57640131|ref|YP_182609.1| - 2.4e-70 235.7 0.0 3e-70 235.3 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1297) DUF1246 PF06849.7 gi|57640131|ref|YP_182609.1| - 2.2e-35 121.1 0.0 3.4e-35 120.4 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1246) ATP-grasp_4 PF13535.1 gi|57640131|ref|YP_182609.1| - 4.8e-10 39.4 0.1 6.5e-09 35.7 0.0 2.2 1 1 0 1 1 1 1 ATP-grasp domain ATP-grasp_3 PF02655.9 gi|57640131|ref|YP_182609.1| - 0.0081 16.0 0.0 0.037 13.9 0.0 2.1 1 1 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.12 gi|57640131|ref|YP_182609.1| - 0.025 13.8 0.0 0.057 12.6 0.0 1.6 2 0 0 2 2 2 0 Carbamoyl-phosphate synthase L chain, ATP binding domain AIRS_C PF02769.17 gi|57640132|ref|YP_182610.1| - 2.3e-55 186.8 3.6 9.4e-32 110.1 0.0 2.8 3 0 0 3 3 3 2 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|57640132|ref|YP_182610.1| - 1.3e-45 153.5 0.6 4.3e-25 87.7 0.0 2.5 2 0 0 2 2 2 2 AIR synthase related protein, N-terminal domain MFS_1 PF07690.11 gi|57640133|ref|YP_182611.1| - 1.2e-10 40.6 23.9 1.3e-10 40.4 16.5 1.0 1 0 0 1 1 1 1 Major Facilitator Superfamily MFS_3 PF05977.8 gi|57640133|ref|YP_182611.1| - 1.8e-09 36.2 10.0 2.2e-09 36.0 6.9 1.0 1 0 0 1 1 1 1 Transmembrane secretion effector MFS_3 PF05977.8 gi|57640134|ref|YP_182612.1| - 1.3e-17 63.0 3.7 1.6e-17 62.8 2.6 1.0 1 0 0 1 1 1 1 Transmembrane secretion effector MFS_1 PF07690.11 gi|57640134|ref|YP_182612.1| - 2.9e-15 55.8 7.6 3.2e-15 55.7 5.3 1.0 1 0 0 1 1 1 1 Major Facilitator Superfamily MFS_2 PF13347.1 gi|57640134|ref|YP_182612.1| - 1e-05 24.1 6.9 1.2e-05 23.8 4.8 1.1 1 0 0 1 1 1 1 MFS/sugar transport protein FPN1 PF06963.7 gi|57640134|ref|YP_182612.1| - 0.0025 16.2 8.7 0.0041 15.5 6.0 1.4 1 1 0 1 1 1 1 Ferroportin1 (FPN1) DUF791 PF05631.9 gi|57640134|ref|YP_182612.1| - 0.0079 14.9 1.6 0.028 13.1 0.2 2.1 1 1 1 2 2 2 1 Protein of unknown function (DUF791) PsbH PF00737.15 gi|57640134|ref|YP_182612.1| - 0.06 12.9 3.7 0.32 10.6 0.2 2.9 2 0 0 2 2 2 0 Photosystem II 10 kDa phosphoprotein CTP_transf_1 PF01148.15 gi|57640134|ref|YP_182612.1| - 0.062 12.9 8.2 0.038 13.6 4.3 1.6 2 0 0 2 2 2 0 Cytidylyltransferase family FixQ PF05545.6 gi|57640134|ref|YP_182612.1| - 0.13 11.9 0.0 0.13 11.9 0.0 2.5 3 0 0 3 3 3 0 Cbb3-type cytochrome oxidase component FixQ PPDK_N PF01326.14 gi|57640135|ref|YP_182613.1| - 1.5e-59 201.7 0.3 1.9e-58 198.0 0.1 2.6 2 1 0 2 2 2 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers PF00391.18 gi|57640135|ref|YP_182613.1| - 3.3e-22 77.8 0.2 2.4e-20 71.8 0.2 2.4 2 0 0 2 2 2 1 PEP-utilising enzyme, mobile domain PEP-utilisers_N PF05524.8 gi|57640135|ref|YP_182613.1| - 0.095 12.5 0.0 0.31 10.8 0.0 1.9 1 0 0 1 1 1 0 PEP-utilising enzyme, N-terminal GATase_5 PF13507.1 gi|57640136|ref|YP_182614.1| - 2e-52 177.6 0.0 2.3e-52 177.4 0.0 1.1 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain DJ-1_PfpI PF01965.19 gi|57640136|ref|YP_182614.1| - 1.1e-10 41.1 0.0 1.3e-10 40.9 0.0 1.4 1 1 0 1 1 1 1 DJ-1/PfpI family GATase PF00117.23 gi|57640136|ref|YP_182614.1| - 1.3e-10 41.0 0.0 2.5e-10 40.1 0.0 1.5 1 1 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.9 gi|57640136|ref|YP_182614.1| - 2.2e-10 40.3 0.0 1.8e-09 37.4 0.0 2.1 2 0 0 2 2 2 1 CobB/CobQ-like glutamine amidotransferase domain SNO PF01174.14 gi|57640136|ref|YP_182614.1| - 1.8e-09 37.5 0.0 3.7e-08 33.2 0.0 2.0 2 0 0 2 2 2 1 SNO glutamine amidotransferase family DUF4066 PF13278.1 gi|57640136|ref|YP_182614.1| - 2.4e-05 23.6 0.0 3.7e-05 23.0 0.0 1.3 1 0 0 1 1 1 1 Putative amidotransferase Peptidase_C26 PF07722.8 gi|57640136|ref|YP_182614.1| - 0.00011 21.7 0.0 0.00027 20.4 0.0 1.6 1 1 0 1 1 1 1 Peptidase C26 DUF4131 PF13567.1 gi|57640136|ref|YP_182614.1| - 0.11 11.9 0.0 0.18 11.2 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) PurS PF02700.9 gi|57640137|ref|YP_182615.1| - 3e-26 91.1 0.0 3.4e-26 90.9 0.0 1.0 1 0 0 1 1 1 1 Phosphoribosylformylglycinamidine (FGAM) synthase DUF1297 PF06973.7 gi|57640138|ref|YP_182616.1| - 5.9e-81 270.2 0.0 8.1e-81 269.8 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1297) DUF1246 PF06849.7 gi|57640138|ref|YP_182616.1| - 1.3e-45 154.1 0.0 2e-45 153.5 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1246) ATP-grasp_4 PF13535.1 gi|57640138|ref|YP_182616.1| - 0.00014 21.7 0.0 0.0033 17.1 0.0 2.2 1 1 0 1 1 1 1 ATP-grasp domain GARS_A PF01071.14 gi|57640139|ref|YP_182617.1| - 9.7e-60 201.4 0.0 1.5e-59 200.8 0.0 1.3 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain GARS_N PF02844.10 gi|57640139|ref|YP_182617.1| - 6.1e-29 100.4 0.2 2.8e-28 98.3 0.1 2.0 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, N domain GARS_C PF02843.11 gi|57640139|ref|YP_182617.1| - 1e-17 64.0 2.5 2.3e-17 62.9 0.1 2.6 3 0 0 3 3 3 1 Phosphoribosylglycinamide synthetase, C domain ATP-grasp_4 PF13535.1 gi|57640139|ref|YP_182617.1| - 5.2e-15 55.6 0.0 9.3e-15 54.8 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain Dala_Dala_lig_C PF07478.8 gi|57640139|ref|YP_182617.1| - 1.2e-05 24.8 0.0 2e-05 24.0 0.0 1.3 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus ATP-grasp_3 PF02655.9 gi|57640139|ref|YP_182617.1| - 1.3e-05 25.0 0.0 2.6e-05 24.1 0.0 1.5 1 1 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|57640139|ref|YP_182617.1| - 0.0026 16.5 0.0 0.031 13.0 0.0 2.1 2 0 0 2 2 2 1 ATP-grasp in the biosynthetic pathway with Ter operon CPSase_L_D2 PF02786.12 gi|57640139|ref|YP_182617.1| - 0.0037 16.5 0.0 0.022 14.0 0.0 2.2 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp PF02222.17 gi|57640139|ref|YP_182617.1| - 0.0039 16.5 0.1 0.0081 15.5 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_ST PF14397.1 gi|57640139|ref|YP_182617.1| - 0.017 14.2 0.0 0.032 13.3 0.0 1.4 1 0 0 1 1 1 0 Sugar-transfer associated ATP-grasp ATP-grasp_2 PF08442.5 gi|57640139|ref|YP_182617.1| - 0.049 13.0 0.0 0.091 12.1 0.0 1.3 1 0 0 1 1 1 0 ATP-grasp domain Vps4_C PF09336.5 gi|57640139|ref|YP_182617.1| - 0.11 12.4 0.0 0.44 10.4 0.0 2.0 2 0 0 2 2 2 0 Vps4 C terminal oligomerisation domain TPR_8 PF13181.1 gi|57640139|ref|YP_182617.1| - 0.23 11.3 2.7 8.5 6.4 0.5 2.7 2 0 0 2 2 2 0 Tetratricopeptide repeat KaiC PF06745.8 gi|57640141|ref|YP_182619.1| - 0.06 12.4 0.1 1.5 7.8 0.0 2.3 2 1 0 2 2 2 0 KaiC ATP-grasp PF02222.17 gi|57640142|ref|YP_182620.1| - 4.2e-56 189.0 0.0 6.3e-56 188.4 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_4 PF13535.1 gi|57640142|ref|YP_182620.1| - 2.1e-15 56.9 0.1 3.3e-15 56.2 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain Dala_Dala_lig_C PF07478.8 gi|57640142|ref|YP_182620.1| - 6.8e-09 35.4 0.0 1.1e-08 34.7 0.0 1.3 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus CPSase_L_D2 PF02786.12 gi|57640142|ref|YP_182620.1| - 1.6e-08 34.1 0.0 2.4e-08 33.5 0.0 1.3 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATPgrasp_Ter PF15632.1 gi|57640142|ref|YP_182620.1| - 0.00015 20.6 0.0 0.00056 18.7 0.0 1.8 2 0 0 2 2 2 1 ATP-grasp in the biosynthetic pathway with Ter operon 2-Hacid_dh_C PF02826.14 gi|57640142|ref|YP_182620.1| - 0.00016 20.8 0.0 0.00028 20.0 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CPSase_L_chain PF00289.17 gi|57640142|ref|YP_182620.1| - 0.0006 19.8 0.1 0.0015 18.5 0.0 1.7 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, N-terminal domain Epimerase PF01370.16 gi|57640142|ref|YP_182620.1| - 0.0016 17.8 0.0 0.0027 17.1 0.0 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family ATP-grasp_3 PF02655.9 gi|57640142|ref|YP_182620.1| - 0.021 14.7 0.0 0.044 13.6 0.0 1.6 1 1 0 1 1 1 0 ATP-grasp domain 3HCDH_N PF02737.13 gi|57640142|ref|YP_182620.1| - 0.12 11.9 0.0 0.27 10.8 0.0 1.6 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AIRS_C PF02769.17 gi|57640143|ref|YP_182621.1| - 1.4e-24 86.8 0.0 2.4e-24 86.0 0.0 1.4 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|57640143|ref|YP_182621.1| - 4.4e-19 68.5 1.1 9.2e-19 67.4 0.8 1.6 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain DUF2874 PF11396.3 gi|57640144|ref|YP_182622.1| - 0.057 13.3 0.0 0.084 12.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2874) SAICAR_synt PF01259.13 gi|57640145|ref|YP_182623.1| - 1.3e-65 220.9 0.0 1.5e-65 220.7 0.0 1.0 1 0 0 1 1 1 1 SAICAR synthetase GATase_7 PF13537.1 gi|57640146|ref|YP_182624.1| - 8.7e-20 70.7 0.0 1.4e-19 70.0 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_6 PF13522.1 gi|57640146|ref|YP_182624.1| - 6e-19 68.3 0.0 1.2e-18 67.3 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|57640146|ref|YP_182624.1| - 8.4e-18 64.2 0.0 2.5e-11 42.8 0.0 3.1 1 1 1 2 2 2 2 Glutamine amidotransferases class-II Pribosyltran PF00156.22 gi|57640146|ref|YP_182624.1| - 1.4e-14 53.8 0.2 2.5e-14 53.0 0.2 1.4 1 0 0 1 1 1 1 Phosphoribosyl transferase domain GATase_4 PF13230.1 gi|57640146|ref|YP_182624.1| - 7.1e-08 31.4 0.0 1.5e-07 30.3 0.0 1.5 2 0 0 2 2 2 1 Glutamine amidotransferases class-II PRTase_2 PF15609.1 gi|57640146|ref|YP_182624.1| - 0.09 12.0 0.0 0.19 10.9 0.0 1.5 1 0 0 1 1 1 0 Phosphoribosyl transferase DUF3368 PF11848.3 gi|57640147|ref|YP_182625.1| - 5.6e-12 45.0 0.2 1.1e-11 44.0 0.1 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF3368) PIN PF01850.16 gi|57640147|ref|YP_182625.1| - 0.37 11.1 3.7 1.2 9.5 0.7 2.5 2 1 0 2 2 2 0 PIN domain UPF0175 PF03683.8 gi|57640148|ref|YP_182626.1| - 1.3e-27 95.0 0.1 1.4e-27 94.9 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0175) Nup54 PF13874.1 gi|57640148|ref|YP_182626.1| - 0.021 14.5 0.1 0.032 13.8 0.0 1.3 1 0 0 1 1 1 0 Nucleoporin complex subunit 54 DUF4095 PF13338.1 gi|57640148|ref|YP_182626.1| - 0.055 13.6 0.0 0.058 13.5 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4095) GIDA_assoc_3 PF13932.1 gi|57640148|ref|YP_182626.1| - 0.095 12.7 0.1 0.16 12.0 0.0 1.6 1 1 0 1 1 1 0 GidA associated domain 3 Endonuc-dimeris PF09124.5 gi|57640148|ref|YP_182626.1| - 0.11 12.0 0.1 0.24 11.0 0.0 1.5 2 0 0 2 2 2 0 T4 recombination endonuclease VII, dimerisation Molybdopterin PF00384.17 gi|57640149|ref|YP_182627.1| - 6.7e-86 288.7 0.0 8.1e-86 288.4 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|57640149|ref|YP_182627.1| - 1.6e-24 85.8 0.0 4.1e-24 84.5 0.0 1.7 2 0 0 2 2 2 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.11 gi|57640149|ref|YP_182627.1| - 1.2e-09 37.8 0.6 2.4e-09 36.8 0.4 1.5 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain CDC48_N PF02359.13 gi|57640149|ref|YP_182627.1| - 0.055 13.4 0.0 0.19 11.7 0.0 1.8 2 0 0 2 2 2 0 Cell division protein 48 (CDC48), N-terminal domain PduL PF06130.7 gi|57640149|ref|YP_182627.1| - 0.066 13.0 0.0 0.15 11.9 0.0 1.5 1 0 0 1 1 1 0 Propanediol utilisation protein PduL S_layer_C PF05124.7 gi|57640150|ref|YP_182628.1| - 2.1e-05 24.2 0.0 5.4e-05 22.9 0.0 1.6 1 1 0 1 1 1 1 S-layer like family, C-terminal region BcsB PF03170.8 gi|57640150|ref|YP_182628.1| - 0.00094 17.3 0.0 0.0013 16.9 0.0 1.1 1 0 0 1 1 1 1 Bacterial cellulose synthase subunit SSP160 PF06933.6 gi|57640150|ref|YP_182628.1| - 0.75 7.7 5.3 1.1 7.2 3.7 1.1 1 0 0 1 1 1 0 Special lobe-specific silk protein SSP160 SNO PF01174.14 gi|57640151|ref|YP_182629.1| - 1.2e-57 194.5 0.0 1.4e-57 194.4 0.0 1.0 1 0 0 1 1 1 1 SNO glutamine amidotransferase family GATase_3 PF07685.9 gi|57640151|ref|YP_182629.1| - 1.6e-11 44.0 0.0 2e-11 43.7 0.0 1.1 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.23 gi|57640151|ref|YP_182629.1| - 3.2e-09 36.5 0.0 1.2e-08 34.6 0.0 1.7 1 1 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_S51 PF03575.12 gi|57640151|ref|YP_182629.1| - 1.2e-05 25.0 0.0 1.5e-05 24.7 0.0 1.2 1 0 0 1 1 1 1 Peptidase family S51 DJ-1_PfpI PF01965.19 gi|57640151|ref|YP_182629.1| - 0.0078 15.6 0.0 0.011 15.2 0.0 1.2 1 0 0 1 1 1 1 DJ-1/PfpI family DUF4066 PF13278.1 gi|57640151|ref|YP_182629.1| - 0.097 11.9 0.0 0.14 11.4 0.0 1.1 1 0 0 1 1 1 0 Putative amidotransferase SOR_SNZ PF01680.12 gi|57640152|ref|YP_182630.1| - 3e-105 350.4 7.5 2e-103 344.4 4.9 2.3 1 1 1 2 2 2 1 SOR/SNZ family ThiG PF05690.9 gi|57640152|ref|YP_182630.1| - 2.9e-10 39.6 6.1 3.9e-08 32.6 0.1 2.7 3 0 0 3 3 3 2 Thiazole biosynthesis protein ThiG Dus PF01207.12 gi|57640152|ref|YP_182630.1| - 8.9e-05 21.4 1.5 0.14 10.9 0.3 2.2 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) NanE PF04131.9 gi|57640152|ref|YP_182630.1| - 0.003 16.5 2.1 0.046 12.6 0.0 2.7 2 1 0 2 2 2 1 Putative N-acetylmannosamine-6-phosphate epimerase NMO PF03060.10 gi|57640152|ref|YP_182630.1| - 0.0032 16.6 4.0 0.069 12.2 0.0 2.7 2 1 0 2 2 2 1 Nitronate monooxygenase IGPS PF00218.16 gi|57640152|ref|YP_182630.1| - 0.016 14.2 0.4 0.11 11.5 0.0 2.2 3 0 0 3 3 3 0 Indole-3-glycerol phosphate synthase His_biosynth PF00977.16 gi|57640152|ref|YP_182630.1| - 0.035 13.3 0.5 0.43 9.8 0.0 2.4 2 0 0 2 2 2 0 Histidine biosynthesis protein QRPTase_C PF01729.14 gi|57640153|ref|YP_182631.1| - 1.8e-56 190.3 1.2 2.8e-56 189.6 0.8 1.3 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.11 gi|57640153|ref|YP_182631.1| - 3.7e-30 103.5 0.1 6.7e-30 102.7 0.1 1.4 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain B12-binding PF02310.14 gi|57640153|ref|YP_182631.1| - 0.00025 20.8 3.9 0.00093 19.0 0.3 2.6 2 1 0 2 2 2 1 B12 binding domain Ribul_P_3_epim PF00834.14 gi|57640153|ref|YP_182631.1| - 0.0047 16.0 0.1 0.018 14.1 0.0 1.9 1 1 1 2 2 2 1 Ribulose-phosphate 3 epimerase family IMPDH PF00478.20 gi|57640153|ref|YP_182631.1| - 0.0088 14.9 0.6 0.012 14.5 0.4 1.1 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain PRAI PF00697.17 gi|57640153|ref|YP_182631.1| - 0.0091 15.5 0.0 0.016 14.7 0.0 1.3 1 0 0 1 1 1 1 N-(5'phosphoribosyl)anthranilate (PRA) isomerase TMP-TENI PF02581.12 gi|57640153|ref|YP_182631.1| - 0.017 14.2 0.0 0.039 13.0 0.0 1.6 1 0 0 1 1 1 0 Thiamine monophosphate synthase/TENI DUF3783 PF12646.2 gi|57640153|ref|YP_182631.1| - 0.021 14.5 0.0 0.058 13.1 0.0 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF3783) Biotin_lipoyl PF00364.17 gi|57640153|ref|YP_182631.1| - 0.03 13.9 1.8 7.1 6.3 0.2 2.7 2 0 0 2 2 2 0 Biotin-requiring enzyme Glu_synthase PF01645.12 gi|57640153|ref|YP_182631.1| - 0.04 12.8 0.4 0.13 11.1 0.0 2.0 2 1 1 3 3 3 0 Conserved region in glutamate synthase Response_reg PF00072.19 gi|57640153|ref|YP_182631.1| - 0.094 12.7 0.4 0.83 9.6 0.1 2.3 2 0 0 2 2 2 0 Response regulator receiver domain Radical_SAM PF04055.16 gi|57640153|ref|YP_182631.1| - 0.11 12.6 0.1 0.35 11.0 0.1 1.9 1 1 0 1 1 1 0 Radical SAM superfamily NTP_transferase PF00483.18 gi|57640154|ref|YP_182632.1| - 1.6e-40 138.9 0.0 2.2e-40 138.5 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.19 gi|57640154|ref|YP_182632.1| - 1.5e-08 33.7 14.1 0.0021 17.4 0.1 4.6 1 1 3 4 4 4 3 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.2 gi|57640154|ref|YP_182632.1| - 0.1 12.6 0.0 0.3 11.1 0.0 1.9 2 0 0 2 2 2 0 MobA-like NTP transferase domain Hexapep_2 PF14602.1 gi|57640154|ref|YP_182632.1| - 0.54 9.8 14.0 2 8.0 1.7 3.8 1 1 3 4 4 4 0 Hexapeptide repeat of succinyl-transferase CMV_US PF08001.6 gi|57640155|ref|YP_182633.1| - 0.018 14.0 0.4 0.024 13.7 0.3 1.3 1 0 0 1 1 1 0 CMV US TMEM169 PF15052.1 gi|57640155|ref|YP_182633.1| - 0.25 11.2 0.1 0.25 11.2 0.1 2.5 3 0 0 3 3 3 0 TMEM169 protein family DUF4131 PF13567.1 gi|57640155|ref|YP_182633.1| - 0.31 10.4 6.3 0.48 9.8 4.2 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4131) Tic20 PF09685.5 gi|57640155|ref|YP_182633.1| - 1.5 8.8 6.9 0.33 10.9 2.4 1.7 2 1 0 2 2 2 0 Tic20-like protein HEPN PF05168.9 gi|57640156|ref|YP_182634.1| - 2.3e-27 95.2 5.8 2.8e-27 94.9 4.0 1.0 1 0 0 1 1 1 1 HEPN domain TPR_11 PF13414.1 gi|57640156|ref|YP_182634.1| - 0.00082 18.9 2.3 0.0032 17.0 1.5 2.0 1 1 0 1 1 1 1 TPR repeat TPR_2 PF07719.12 gi|57640156|ref|YP_182634.1| - 0.009 15.8 2.0 0.04 13.8 0.3 2.7 2 1 0 2 2 2 1 Tetratricopeptide repeat DUF4398 PF14346.1 gi|57640156|ref|YP_182634.1| - 0.033 14.2 1.7 0.039 14.0 0.2 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4398) PLU-1 PF08429.6 gi|57640156|ref|YP_182634.1| - 0.079 11.8 0.1 0.11 11.3 0.1 1.3 1 0 0 1 1 1 0 PLU-1-like protein YppF PF14178.1 gi|57640156|ref|YP_182634.1| - 0.086 12.3 0.2 9.6 5.8 0.0 2.6 1 1 1 2 2 2 0 YppF-like protein HEM4 PF02602.10 gi|57640156|ref|YP_182634.1| - 0.091 11.9 0.3 0.13 11.4 0.2 1.5 1 1 0 1 1 1 0 Uroporphyrinogen-III synthase HemD TPR_1 PF00515.23 gi|57640156|ref|YP_182634.1| - 0.26 10.9 3.9 0.45 10.2 0.2 2.7 2 1 1 3 3 3 0 Tetratricopeptide repeat PAH PF02671.16 gi|57640156|ref|YP_182634.1| - 0.33 10.6 1.5 3.4 7.3 0.0 2.8 3 0 0 3 3 3 0 Paired amphipathic helix repeat NTP_transf_2 PF01909.18 gi|57640157|ref|YP_182635.1| - 2.8e-12 46.8 0.1 3.6e-12 46.4 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyltransferase domain DNA_pol_B_palm PF14792.1 gi|57640157|ref|YP_182635.1| - 0.078 13.0 0.0 0.11 12.5 0.0 1.2 1 0 0 1 1 1 0 DNA polymerase beta palm MdcG PF10620.4 gi|57640157|ref|YP_182635.1| - 0.15 11.5 0.0 0.2 11.1 0.0 1.3 1 0 0 1 1 1 0 Phosphoribosyl-dephospho-CoA transferase MdcG MFS_1 PF07690.11 gi|57640158|ref|YP_182636.1| - 3.1e-11 42.5 27.6 3.1e-11 42.5 19.2 2.8 1 1 1 2 2 2 2 Major Facilitator Superfamily DUF4536 PF15055.1 gi|57640158|ref|YP_182636.1| - 0.1 12.6 0.1 0.81 9.8 0.0 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4536) Methyltransf_11 PF08241.7 gi|57640159|ref|YP_182637.1| - 7.4e-20 71.2 0.0 1.1e-19 70.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|57640159|ref|YP_182637.1| - 3.6e-14 52.7 0.0 5e-14 52.3 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|57640159|ref|YP_182637.1| - 2.8e-11 43.2 0.0 3.7e-11 42.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|57640159|ref|YP_182637.1| - 3.1e-11 43.5 0.0 4.9e-11 42.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|57640159|ref|YP_182637.1| - 5e-11 42.9 0.0 8.8e-11 42.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|57640159|ref|YP_182637.1| - 8.9e-10 39.1 0.0 2.3e-09 37.8 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|57640159|ref|YP_182637.1| - 4.6e-08 32.4 0.0 5.1e-07 29.0 0.0 2.0 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_26 PF13659.1 gi|57640159|ref|YP_182637.1| - 1.9e-06 27.9 0.0 3.4e-06 27.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_8 PF05148.10 gi|57640159|ref|YP_182637.1| - 2e-06 27.5 0.0 1.1e-05 25.2 0.0 1.9 1 1 0 1 1 1 1 Hypothetical methyltransferase MetW PF07021.7 gi|57640159|ref|YP_182637.1| - 0.00028 20.3 0.0 0.0004 19.8 0.0 1.4 1 1 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_2 PF00891.13 gi|57640159|ref|YP_182637.1| - 0.0025 17.0 0.2 0.0094 15.1 0.2 1.7 1 1 0 1 1 1 1 O-methyltransferase NNMT_PNMT_TEMT PF01234.12 gi|57640159|ref|YP_182637.1| - 0.0093 14.9 0.0 0.015 14.2 0.0 1.4 1 0 0 1 1 1 1 NNMT/PNMT/TEMT family CMAS PF02353.15 gi|57640159|ref|YP_182637.1| - 0.015 14.4 0.1 0.11 11.4 0.1 2.0 1 1 0 1 1 1 0 Mycolic acid cyclopropane synthetase MTS PF05175.9 gi|57640159|ref|YP_182637.1| - 0.016 14.5 0.0 0.19 11.1 0.0 2.0 2 0 0 2 2 2 0 Methyltransferase small domain Methyltransf_9 PF08003.6 gi|57640159|ref|YP_182637.1| - 0.032 12.9 0.0 0.043 12.5 0.0 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF1698) TehB PF03848.9 gi|57640159|ref|YP_182637.1| - 0.076 12.1 0.0 5.3 6.1 0.0 2.1 2 0 0 2 2 2 0 Tellurite resistance protein TehB Bin3 PF06859.7 gi|57640159|ref|YP_182637.1| - 0.13 12.3 0.0 0.43 10.5 0.0 1.8 2 0 0 2 2 2 0 Bicoid-interacting protein 3 (Bin3) AdoMet_MTase PF07757.8 gi|57640159|ref|YP_182637.1| - 0.13 12.3 0.0 0.22 11.6 0.0 1.4 1 0 0 1 1 1 0 Predicted AdoMet-dependent methyltransferase Methyltransf_29 PF03141.11 gi|57640159|ref|YP_182637.1| - 0.16 10.2 0.1 0.41 8.9 0.0 1.6 2 0 0 2 2 2 0 Putative S-adenosyl-L-methionine-dependent methyltransferase HTH_20 PF12840.2 gi|57640160|ref|YP_182638.1| - 5.7e-05 22.8 0.6 0.00011 21.9 0.1 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain Penicillinase_R PF03965.11 gi|57640160|ref|YP_182638.1| - 0.00013 22.0 0.0 0.00024 21.1 0.0 1.4 1 0 0 1 1 1 1 Penicillinase repressor HTH_5 PF01022.15 gi|57640160|ref|YP_182638.1| - 0.0015 18.1 0.1 0.0073 15.9 0.1 2.1 1 1 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|57640160|ref|YP_182638.1| - 0.0065 15.8 0.5 0.012 14.9 0.1 1.7 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_12 PF08461.5 gi|57640160|ref|YP_182638.1| - 0.011 15.4 1.3 0.011 15.4 0.9 1.8 2 0 0 2 2 2 0 Ribonuclease R winged-helix domain HTH_11 PF08279.7 gi|57640160|ref|YP_182638.1| - 0.012 15.2 0.7 0.089 12.4 0.2 2.6 2 1 0 2 2 2 0 HTH domain HTH_27 PF13463.1 gi|57640160|ref|YP_182638.1| - 0.015 15.6 0.2 0.041 14.1 0.1 1.8 1 1 1 2 2 2 0 Winged helix DNA-binding domain FUR PF01475.14 gi|57640160|ref|YP_182638.1| - 0.017 15.0 0.0 0.028 14.3 0.0 1.4 1 0 0 1 1 1 0 Ferric uptake regulator family Replic_Relax PF13814.1 gi|57640160|ref|YP_182638.1| - 0.04 13.7 0.0 0.058 13.2 0.0 1.2 1 0 0 1 1 1 0 Replication-relaxation HTH_36 PF13730.1 gi|57640160|ref|YP_182638.1| - 0.092 12.8 0.2 0.54 10.4 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain Ribosomal_S19e PF01090.14 gi|57640160|ref|YP_182638.1| - 0.1 12.0 0.1 0.17 11.2 0.1 1.4 1 0 0 1 1 1 0 Ribosomal protein S19e DUF2250 PF10007.4 gi|57640160|ref|YP_182638.1| - 0.1 12.5 0.1 0.24 11.3 0.0 1.7 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) RasGAP_C PF03836.10 gi|57640160|ref|YP_182638.1| - 0.12 12.0 0.4 12 5.6 0.0 2.1 2 0 0 2 2 2 0 RasGAP C-terminus Ftsk_gamma PF09397.5 gi|57640160|ref|YP_182638.1| - 0.14 11.8 0.8 0.48 10.1 0.6 1.9 1 1 0 1 1 1 0 Ftsk gamma domain MarR_2 PF12802.2 gi|57640160|ref|YP_182638.1| - 0.15 11.7 1.8 1.3 8.7 1.3 2.3 1 1 0 1 1 1 0 MarR family TrmB PF01978.14 gi|57640160|ref|YP_182638.1| - 0.45 10.2 3.3 0.29 10.8 0.4 2.1 2 2 1 3 3 3 0 Sugar-specific transcriptional regulator TrmB RFC1 PF08519.7 gi|57640161|ref|YP_182639.1| - 0.01 15.6 1.0 0.022 14.4 0.2 1.7 1 1 1 2 2 2 1 Replication factor RFC1 C terminal domain CorA PF01544.13 gi|57640161|ref|YP_182639.1| - 0.078 11.9 0.4 0.11 11.5 0.3 1.2 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein RP-C_C PF11800.3 gi|57640161|ref|YP_182639.1| - 0.21 11.2 1.4 1.6 8.4 1.0 2.0 1 1 0 1 1 1 0 Replication protein C C-terminal region Spectrin PF00435.16 gi|57640161|ref|YP_182639.1| - 0.21 11.8 2.6 0.82 9.9 1.6 2.2 1 1 0 1 1 1 0 Spectrin repeat DUF4168 PF13767.1 gi|57640161|ref|YP_182639.1| - 0.35 11.5 2.2 2.2 8.9 0.4 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4168) Phasin PF05597.6 gi|57640161|ref|YP_182639.1| - 0.35 10.6 3.9 0.56 9.9 0.8 2.2 2 0 0 2 2 2 0 Poly(hydroxyalcanoate) granule associated protein (phasin) RecX PF02631.11 gi|57640162|ref|YP_182640.1| - 0.073 13.2 0.0 0.081 13.1 0.0 1.1 1 0 0 1 1 1 0 RecX family Acetyltransf_7 PF13508.1 gi|57640164|ref|YP_182642.1| - 0.001 19.1 0.0 0.0014 18.7 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|57640164|ref|YP_182642.1| - 0.0026 17.7 0.0 0.0051 16.8 0.0 1.5 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family ABC_tran PF00005.22 gi|57640165|ref|YP_182643.1| - 1.5e-25 90.1 0.0 3.4e-25 88.9 0.0 1.6 2 0 0 2 2 1 1 ABC transporter AAA_21 PF13304.1 gi|57640165|ref|YP_182643.1| - 7.7e-10 39.2 4.1 1.5e-07 31.6 0.2 2.8 2 1 0 2 2 2 1 AAA domain AAA PF00004.24 gi|57640165|ref|YP_182643.1| - 2.6e-05 24.4 0.1 0.0035 17.5 0.0 2.5 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|57640165|ref|YP_182643.1| - 6.6e-05 22.6 0.2 0.036 13.7 0.0 2.8 3 1 0 3 3 2 1 AAA domain (dynein-related subfamily) AAA_23 PF13476.1 gi|57640165|ref|YP_182643.1| - 0.00014 22.2 0.2 0.0007 19.9 0.0 2.1 2 0 0 2 2 2 1 AAA domain UPF0079 PF02367.12 gi|57640165|ref|YP_182643.1| - 0.00014 21.4 0.0 0.00023 20.7 0.0 1.3 1 0 0 1 1 1 1 Uncharacterised P-loop hydrolase UPF0079 SMC_N PF02463.14 gi|57640165|ref|YP_182643.1| - 0.00021 20.6 0.0 0.022 14.0 0.0 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain IstB_IS21 PF01695.12 gi|57640165|ref|YP_182643.1| - 0.00049 19.5 0.0 0.33 10.3 0.0 2.2 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_17 PF13207.1 gi|57640165|ref|YP_182643.1| - 0.0005 20.8 0.1 0.0017 19.1 0.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|57640165|ref|YP_182643.1| - 0.00091 19.2 0.0 0.0013 18.8 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.1 gi|57640165|ref|YP_182643.1| - 0.0018 17.7 0.0 0.004 16.6 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF258 PF03193.11 gi|57640165|ref|YP_182643.1| - 0.0022 17.1 0.0 0.0037 16.4 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_22 PF13401.1 gi|57640165|ref|YP_182643.1| - 0.0025 17.9 0.0 0.0064 16.6 0.0 1.9 1 1 0 1 1 1 1 AAA domain Arch_ATPase PF01637.13 gi|57640165|ref|YP_182643.1| - 0.0027 17.4 0.3 0.011 15.3 0.0 2.3 1 1 1 2 2 2 1 Archaeal ATPase AAA_14 PF13173.1 gi|57640165|ref|YP_182643.1| - 0.0056 16.5 0.4 0.16 11.8 0.0 2.8 2 1 0 3 3 3 1 AAA domain AAA_28 PF13521.1 gi|57640165|ref|YP_182643.1| - 0.012 15.5 0.0 0.027 14.4 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|57640165|ref|YP_182643.1| - 0.013 15.3 0.0 0.022 14.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_13 PF13166.1 gi|57640165|ref|YP_182643.1| - 0.016 13.7 0.0 0.028 12.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain SRP54 PF00448.17 gi|57640165|ref|YP_182643.1| - 0.016 14.6 0.0 0.026 13.9 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Rad17 PF03215.10 gi|57640165|ref|YP_182643.1| - 0.024 13.3 0.0 0.038 12.6 0.0 1.2 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein Zeta_toxin PF06414.7 gi|57640165|ref|YP_182643.1| - 0.026 13.6 0.0 0.043 12.9 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin NACHT PF05729.7 gi|57640165|ref|YP_182643.1| - 0.031 13.9 0.0 0.055 13.1 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_18 PF13238.1 gi|57640165|ref|YP_182643.1| - 0.033 14.4 0.0 0.068 13.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_PrkA PF08298.6 gi|57640165|ref|YP_182643.1| - 0.038 12.6 0.0 0.061 12.0 0.0 1.3 1 0 0 1 1 1 0 PrkA AAA domain AAA_2 PF07724.9 gi|57640165|ref|YP_182643.1| - 0.054 13.3 0.2 9.9 6.0 0.0 2.4 2 1 0 2 2 2 0 AAA domain (Cdc48 subfamily) APS_kinase PF01583.15 gi|57640165|ref|YP_182643.1| - 0.055 13.1 0.0 0.099 12.3 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_19 PF13245.1 gi|57640165|ref|YP_182643.1| - 0.059 13.1 0.0 0.13 12.0 0.0 1.6 1 0 0 1 1 1 0 Part of AAA domain AAA_30 PF13604.1 gi|57640165|ref|YP_182643.1| - 0.062 12.8 0.0 0.14 11.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.16 gi|57640165|ref|YP_182643.1| - 0.069 12.3 0.0 0.49 9.5 0.0 2.1 2 1 0 2 2 2 0 Magnesium chelatase, subunit ChlI RNA_helicase PF00910.17 gi|57640165|ref|YP_182643.1| - 0.084 13.0 0.0 0.26 11.4 0.0 1.8 2 0 0 2 2 1 0 RNA helicase Thymidylate_kin PF02223.12 gi|57640165|ref|YP_182643.1| - 0.088 12.1 0.0 0.22 10.8 0.0 1.7 2 0 0 2 2 2 0 Thymidylate kinase RuvB_N PF05496.7 gi|57640165|ref|YP_182643.1| - 0.11 11.5 0.1 0.24 10.4 0.0 1.6 2 0 0 2 2 2 0 Holliday junction DNA helicase ruvB N-terminus PhoH PF02562.11 gi|57640165|ref|YP_182643.1| - 0.12 11.5 0.0 0.89 8.7 0.0 2.0 2 0 0 2 2 2 0 PhoH-like protein cobW PF02492.14 gi|57640165|ref|YP_182643.1| - 0.14 11.5 0.0 0.22 10.9 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_25 PF13481.1 gi|57640165|ref|YP_182643.1| - 0.14 11.5 0.0 0.33 10.3 0.0 1.6 2 0 0 2 2 1 0 AAA domain ABC2_membrane PF01061.19 gi|57640166|ref|YP_182644.1| - 9.5e-12 44.5 28.0 1.3e-11 44.0 19.4 1.2 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|57640166|ref|YP_182644.1| - 1.2e-05 24.5 38.7 1.2e-05 24.5 26.8 1.6 1 1 1 2 2 2 1 ABC-2 family transporter protein Keratin_assoc PF09775.4 gi|57640166|ref|YP_182644.1| - 4.9 6.7 10.8 2.6 7.6 4.0 2.5 2 0 0 2 2 2 0 Keratinocyte-associated protein 2 zf-DHHC PF01529.15 gi|57640166|ref|YP_182644.1| - 7 6.0 5.4 14 5.0 3.7 1.6 1 0 0 1 1 1 0 DHHC palmitoyltransferase Acetyltransf_1 PF00583.19 gi|57640167|ref|YP_182645.1| - 2.9e-14 52.8 0.1 1.4e-13 50.6 0.1 2.0 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_3 PF13302.1 gi|57640167|ref|YP_182645.1| - 8.6e-07 29.2 0.2 1.8e-06 28.1 0.0 1.6 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|57640167|ref|YP_182645.1| - 3.2e-06 27.2 0.1 4.4e-05 23.5 0.0 2.3 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|57640167|ref|YP_182645.1| - 4.7e-06 26.7 0.0 7.4e-06 26.0 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|57640167|ref|YP_182645.1| - 3.3e-05 23.8 0.0 0.00095 19.1 0.0 2.2 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|57640167|ref|YP_182645.1| - 0.00023 21.0 0.0 0.00051 19.8 0.0 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|57640167|ref|YP_182645.1| - 0.00035 20.2 0.0 0.00068 19.3 0.0 1.5 1 0 0 1 1 1 1 FR47-like protein LytTR PF04397.10 gi|57640167|ref|YP_182645.1| - 0.14 12.2 0.0 7.3 6.7 0.0 2.3 2 0 0 2 2 2 0 LytTr DNA-binding domain Acetyltransf_3 PF13302.1 gi|57640168|ref|YP_182646.1| - 8.9e-32 110.1 0.3 1.3e-31 109.7 0.2 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|57640168|ref|YP_182646.1| - 3.6e-23 82.2 0.1 4.7e-23 81.8 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|57640168|ref|YP_182646.1| - 4.2e-12 45.9 0.1 7.1e-12 45.1 0.1 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_8 PF13523.1 gi|57640168|ref|YP_182646.1| - 1.1e-08 35.0 0.0 1.9e-08 34.3 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|57640168|ref|YP_182646.1| - 2.9e-06 27.3 0.1 5.1e-06 26.5 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|57640168|ref|YP_182646.1| - 0.069 12.9 0.0 0.16 11.7 0.0 1.7 1 0 0 1 1 1 0 FR47-like protein Methyltransf_31 PF13847.1 gi|57640169|ref|YP_182647.1| - 1.3e-21 76.7 0.0 1.6e-21 76.4 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|57640169|ref|YP_182647.1| - 6.2e-15 55.7 0.0 1e-14 55.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|57640169|ref|YP_182647.1| - 1.1e-14 54.6 0.1 1.8e-14 54.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|57640169|ref|YP_182647.1| - 5.2e-13 49.0 0.0 6.6e-13 48.6 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|57640169|ref|YP_182647.1| - 6.9e-13 48.8 0.0 1.1e-12 48.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|57640169|ref|YP_182647.1| - 1.7e-12 47.0 0.0 2.5e-12 46.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_12 PF08242.7 gi|57640169|ref|YP_182647.1| - 1.3e-11 44.7 0.0 1.9e-11 44.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|57640169|ref|YP_182647.1| - 3.5e-09 36.1 0.2 4.5e-09 35.7 0.1 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_26 PF13659.1 gi|57640169|ref|YP_182647.1| - 2.6e-08 33.8 0.0 5.1e-08 32.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_4 PF02390.12 gi|57640169|ref|YP_182647.1| - 2.1e-06 26.9 0.0 7.8e-06 25.0 0.0 1.7 2 0 0 2 2 2 1 Putative methyltransferase FmrO PF07091.6 gi|57640169|ref|YP_182647.1| - 2.2e-06 26.8 0.0 2.8e-06 26.5 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA methyltransferase (FmrO) Methyltransf_32 PF13679.1 gi|57640169|ref|YP_182647.1| - 2.9e-06 27.0 0.0 4e-06 26.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_9 PF08003.6 gi|57640169|ref|YP_182647.1| - 4.8e-06 25.4 0.1 6e-06 25.1 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) MetW PF07021.7 gi|57640169|ref|YP_182647.1| - 7e-06 25.5 0.1 9.7e-06 25.0 0.1 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW PrmA PF06325.8 gi|57640169|ref|YP_182647.1| - 1.4e-05 24.3 0.0 1.7e-05 24.1 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) PCMT PF01135.14 gi|57640169|ref|YP_182647.1| - 1.4e-05 24.7 0.0 2.1e-05 24.1 0.0 1.3 1 1 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_2 PF00891.13 gi|57640169|ref|YP_182647.1| - 4.9e-05 22.6 0.1 6.4e-05 22.2 0.1 1.1 1 0 0 1 1 1 1 O-methyltransferase NodS PF05401.6 gi|57640169|ref|YP_182647.1| - 5.9e-05 22.5 0.0 7.7e-05 22.1 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) ADH_zinc_N PF00107.21 gi|57640169|ref|YP_182647.1| - 0.00038 20.0 0.0 0.00091 18.7 0.0 1.7 1 1 0 1 1 1 1 Zinc-binding dehydrogenase CMAS PF02353.15 gi|57640169|ref|YP_182647.1| - 0.00039 19.6 0.1 0.00049 19.2 0.1 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase TehB PF03848.9 gi|57640169|ref|YP_182647.1| - 0.00041 19.5 0.0 0.00057 19.1 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB RrnaAD PF00398.15 gi|57640169|ref|YP_182647.1| - 0.00087 18.3 0.0 0.0012 17.9 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase FtsJ PF01728.14 gi|57640169|ref|YP_182647.1| - 0.0069 16.3 0.1 0.019 14.9 0.0 1.7 1 1 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_PK PF05891.7 gi|57640169|ref|YP_182647.1| - 0.018 14.3 0.2 0.034 13.4 0.1 1.5 1 1 0 1 1 1 0 AdoMet dependent proline di-methyltransferase DOT1 PF08123.8 gi|57640169|ref|YP_182647.1| - 0.018 14.3 0.4 0.024 13.9 0.3 1.4 1 1 0 1 1 1 0 Histone methylation protein DOT1 Pox_MCEL PF03291.11 gi|57640169|ref|YP_182647.1| - 0.028 13.2 0.0 0.69 8.7 0.0 2.0 1 1 1 2 2 2 0 mRNA capping enzyme GidB PF02527.10 gi|57640169|ref|YP_182647.1| - 0.079 12.0 0.0 0.11 11.6 0.0 1.2 1 0 0 1 1 1 0 rRNA small subunit methyltransferase G AsiA PF09010.5 gi|57640169|ref|YP_182647.1| - 0.098 12.5 0.2 0.28 11.0 0.1 1.7 1 0 0 1 1 1 0 Anti-Sigma Factor A Methyltransf_15 PF09445.5 gi|57640169|ref|YP_182647.1| - 0.13 11.8 0.0 0.16 11.5 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase MFS_1 PF07690.11 gi|57640170|ref|YP_182648.1| - 1.4e-16 60.1 30.6 1.4e-16 60.1 21.2 2.7 1 1 1 2 2 2 1 Major Facilitator Superfamily MFS_3 PF05977.8 gi|57640170|ref|YP_182648.1| - 0.011 13.8 0.3 0.011 13.8 0.2 2.2 2 0 0 2 2 2 0 Transmembrane secretion effector PQQ_2 PF13360.1 gi|57640171|ref|YP_182649.1| - 0.0049 16.3 0.9 0.099 12.0 0.5 2.2 1 1 1 2 2 2 2 PQQ-like domain PQQ_3 PF13570.1 gi|57640171|ref|YP_182649.1| - 1 9.7 11.3 18 5.7 0.0 4.9 6 0 0 6 6 6 0 PQQ-like domain TraX PF05857.6 gi|57640172|ref|YP_182650.1| - 0.00061 19.5 5.6 0.00077 19.1 3.9 1.2 1 0 0 1 1 1 1 TraX protein DUF4229 PF14012.1 gi|57640172|ref|YP_182650.1| - 0.014 15.2 1.4 0.014 15.2 1.0 2.8 2 1 1 3 3 3 0 Protein of unknown function (DUF4229) DUF368 PF04018.8 gi|57640172|ref|YP_182650.1| - 0.023 13.9 3.8 0.028 13.6 2.6 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF368) DUF1097 PF06496.6 gi|57640172|ref|YP_182650.1| - 0.079 12.7 5.0 0.65 9.7 3.4 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF1097) CTP_transf_1 PF01148.15 gi|57640172|ref|YP_182650.1| - 0.15 11.6 6.7 0.2 11.2 4.6 1.3 1 0 0 1 1 1 0 Cytidylyltransferase family MFS_1 PF07690.11 gi|57640172|ref|YP_182650.1| - 0.43 9.2 8.3 0.6 8.7 5.7 1.3 1 0 0 1 1 1 0 Major Facilitator Superfamily NQR2_RnfD_RnfE PF03116.10 gi|57640172|ref|YP_182650.1| - 0.71 8.9 7.6 3.9 6.5 0.1 2.0 1 1 1 2 2 2 0 NQR2, RnfD, RnfE family DUF4233 PF14017.1 gi|57640172|ref|YP_182650.1| - 0.87 9.5 10.7 0.33 10.8 2.6 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF4233) Chitin_synth_2 PF03142.10 gi|57640172|ref|YP_182650.1| - 1.4 7.2 6.0 1.6 7.0 4.2 1.0 1 0 0 1 1 1 0 Chitin synthase DUF2208 PF09973.4 gi|57640172|ref|YP_182650.1| - 1.4 8.0 8.6 0.68 9.1 4.4 1.5 1 1 0 1 1 1 0 Predicted membrane protein (DUF2208) IspA PF04279.10 gi|57640172|ref|YP_182650.1| - 3.7 7.4 9.9 14 5.6 6.8 1.9 1 1 0 1 1 1 0 Intracellular septation protein A Vma12 PF11712.3 gi|57640172|ref|YP_182650.1| - 4.9 6.8 6.0 7.7 6.2 4.2 1.3 1 0 0 1 1 1 0 Endoplasmic reticulum-based factor for assembly of V-ATPase YibE_F PF07907.6 gi|57640172|ref|YP_182650.1| - 8.2 5.5 11.6 0.71 9.0 1.6 1.7 1 1 1 2 2 2 0 YibE/F-like protein CN_hydrolase PF00795.17 gi|57640173|ref|YP_182651.1| - 1.1e-13 50.9 0.0 1.8e-13 50.2 0.0 1.4 1 1 0 1 1 1 1 Carbon-nitrogen hydrolase tRNA_bind PF01588.15 gi|57640174|ref|YP_182652.1| - 3e-28 97.5 0.0 3.3e-28 97.3 0.0 1.0 1 0 0 1 1 1 1 Putative tRNA binding domain Arginase PF00491.16 gi|57640175|ref|YP_182653.1| - 2.8e-75 253.1 0.0 3.3e-75 252.9 0.0 1.0 1 0 0 1 1 1 1 Arginase family DSPc PF00782.15 gi|57640176|ref|YP_182654.1| - 3.6e-18 65.4 0.0 4.2e-18 65.2 0.0 1.2 1 0 0 1 1 1 1 Dual specificity phosphatase, catalytic domain CDKN3 PF05706.7 gi|57640176|ref|YP_182654.1| - 6e-11 42.0 0.0 6.4e-11 41.9 0.0 1.1 1 0 0 1 1 1 1 Cyclin-dependent kinase inhibitor 3 (CDKN3) Y_phosphatase PF00102.22 gi|57640176|ref|YP_182654.1| - 4.4e-10 39.2 0.0 5.5e-10 38.9 0.0 1.1 1 0 0 1 1 1 1 Protein-tyrosine phosphatase PTPlike_phytase PF14566.1 gi|57640176|ref|YP_182654.1| - 4.4e-06 26.8 0.4 0.0012 18.9 0.0 2.5 2 1 0 3 3 3 2 Inositol hexakisphosphate PmbA_TldD PF01523.11 gi|57640176|ref|YP_182654.1| - 0.078 12.2 0.0 0.14 11.4 0.0 1.5 1 1 1 2 2 2 0 Putative modulator of DNA gyrase Y_phosphatase3 PF13350.1 gi|57640176|ref|YP_182654.1| - 0.15 12.2 0.0 0.19 11.9 0.0 1.3 1 0 0 1 1 1 0 Tyrosine phosphatase family tRNA-synt_His PF13393.1 gi|57640177|ref|YP_182655.1| - 4.5e-26 91.6 0.0 7.5e-24 84.3 0.0 2.6 1 1 0 1 1 1 1 Histidyl-tRNA synthetase HisG PF01634.13 gi|57640178|ref|YP_182656.1| - 4.9e-46 156.2 0.0 5.8e-46 156.0 0.0 1.1 1 0 0 1 1 1 1 ATP phosphoribosyltransferase Histidinol_dh PF00815.15 gi|57640179|ref|YP_182657.1| - 6.8e-122 407.0 0.0 1.7e-81 273.9 0.0 2.0 1 1 1 2 2 2 2 Histidinol dehydrogenase IGPD PF00475.13 gi|57640180|ref|YP_182658.1| - 3.2e-39 134.0 0.0 4.2e-39 133.7 0.0 1.1 1 0 0 1 1 1 1 Imidazoleglycerol-phosphate dehydratase GATase PF00117.23 gi|57640181|ref|YP_182659.1| - 4.1e-27 94.9 0.0 4.5e-27 94.7 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|57640181|ref|YP_182659.1| - 4.5e-05 22.9 0.1 0.01 15.2 0.0 2.2 2 0 0 2 2 2 2 Peptidase C26 GATase_3 PF07685.9 gi|57640181|ref|YP_182659.1| - 0.00013 21.6 0.0 0.00019 21.0 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain His_biosynth PF00977.16 gi|57640182|ref|YP_182660.1| - 4.7e-58 196.1 1.3 5.5e-58 195.9 0.9 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein PcrB PF01884.12 gi|57640182|ref|YP_182660.1| - 8.5e-05 21.9 1.9 0.018 14.3 0.1 2.1 2 0 0 2 2 2 2 PcrB family Trp_syntA PF00290.15 gi|57640182|ref|YP_182660.1| - 0.0067 14.9 0.2 1.9 6.9 0.0 2.1 2 0 0 2 2 2 2 Tryptophan synthase alpha chain IGPS PF00218.16 gi|57640182|ref|YP_182660.1| - 0.04 12.9 0.0 0.49 9.4 0.0 2.0 2 0 0 2 2 2 0 Indole-3-glycerol phosphate synthase FMN_dh PF01070.13 gi|57640182|ref|YP_182660.1| - 0.13 11.0 1.4 3.2 6.5 0.1 2.3 3 0 0 3 3 3 0 FMN-dependent dehydrogenase His_biosynth PF00977.16 gi|57640183|ref|YP_182661.1| - 1.5e-87 292.6 0.5 1.7e-87 292.4 0.3 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein ThiG PF05690.9 gi|57640183|ref|YP_182661.1| - 1.1e-09 37.7 0.1 0.001 18.2 0.0 2.1 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG NMO PF03060.10 gi|57640183|ref|YP_182661.1| - 5e-08 32.4 2.8 4.1e-06 26.1 0.3 2.2 2 0 0 2 2 2 2 Nitronate monooxygenase Dus PF01207.12 gi|57640183|ref|YP_182661.1| - 9.2e-08 31.2 0.1 8.5e-06 24.8 0.1 2.1 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) PcrB PF01884.12 gi|57640183|ref|YP_182661.1| - 2.3e-06 27.0 1.9 2.3e-05 23.7 0.2 2.4 2 1 1 3 3 3 1 PcrB family TMP-TENI PF02581.12 gi|57640183|ref|YP_182661.1| - 2.6e-06 26.6 0.2 0.023 13.8 0.0 2.6 2 1 1 3 3 3 2 Thiamine monophosphate synthase/TENI IMPDH PF00478.20 gi|57640183|ref|YP_182661.1| - 1.5e-05 24.0 0.6 0.066 12.1 0.1 2.3 2 1 0 2 2 2 2 IMP dehydrogenase / GMP reductase domain DHO_dh PF01180.16 gi|57640183|ref|YP_182661.1| - 3e-05 23.1 0.3 0.16 10.8 0.0 2.1 2 0 0 2 2 2 2 Dihydroorotate dehydrogenase FMN_dh PF01070.13 gi|57640183|ref|YP_182661.1| - 0.00081 18.3 0.0 0.013 14.3 0.0 2.1 1 1 0 1 1 1 1 FMN-dependent dehydrogenase G3P_antiterm PF04309.7 gi|57640183|ref|YP_182661.1| - 0.023 13.7 0.5 0.79 8.7 0.1 2.1 2 0 0 2 2 2 0 Glycerol-3-phosphate responsive antiterminator Trp_syntA PF00290.15 gi|57640183|ref|YP_182661.1| - 0.025 13.1 0.1 0.042 12.3 0.1 1.3 1 0 0 1 1 1 0 Tryptophan synthase alpha chain SAP PF02037.22 gi|57640183|ref|YP_182661.1| - 0.034 13.6 0.0 0.21 11.1 0.0 2.3 3 0 0 3 3 3 0 SAP domain PRA-CH PF01502.13 gi|57640184|ref|YP_182662.1| - 7.8e-34 115.1 0.0 1.3e-33 114.4 0.0 1.4 1 0 0 1 1 1 1 Phosphoribosyl-AMP cyclohydrolase PRA-PH PF01503.12 gi|57640184|ref|YP_182662.1| - 8.7e-13 48.3 0.2 1.6e-12 47.5 0.1 1.4 1 0 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase MazG PF03819.12 gi|57640184|ref|YP_182662.1| - 0.16 11.8 0.1 0.16 11.8 0.1 1.9 3 0 0 3 3 3 0 MazG nucleotide pyrophosphohydrolase domain Aminotran_1_2 PF00155.16 gi|57640185|ref|YP_182663.1| - 1.8e-49 168.6 0.0 2.4e-49 168.2 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Alliinase_C PF04864.8 gi|57640185|ref|YP_182663.1| - 0.00039 19.1 0.0 0.00056 18.6 0.0 1.2 1 0 0 1 1 1 1 Allinase Aminotran_5 PF00266.14 gi|57640185|ref|YP_182663.1| - 0.00085 18.1 0.0 0.0014 17.4 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.15 gi|57640185|ref|YP_182663.1| - 0.068 11.4 0.0 0.095 10.9 0.0 1.2 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme HAD PF12710.2 gi|57640186|ref|YP_182664.1| - 2.8e-05 24.3 0.0 4.9e-05 23.5 0.0 1.3 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|57640186|ref|YP_182664.1| - 3.5e-05 24.0 0.0 0.0001 22.5 0.0 1.7 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|57640186|ref|YP_182664.1| - 0.058 13.7 0.0 2.5 8.4 0.0 2.2 2 0 0 2 2 2 0 haloacid dehalogenase-like hydrolase IGPS PF00218.16 gi|57640187|ref|YP_182665.1| - 1.3e-59 201.3 0.0 1.5e-59 201.1 0.0 1.0 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase PucR PF07905.6 gi|57640187|ref|YP_182665.1| - 0.00046 19.7 0.0 0.2 11.2 0.0 2.8 2 1 1 3 3 3 2 Purine catabolism regulatory protein-like family His_biosynth PF00977.16 gi|57640187|ref|YP_182665.1| - 0.0081 15.4 0.0 2.1 7.5 0.0 2.3 2 1 0 2 2 2 2 Histidine biosynthesis protein Glycos_transf_3 PF00591.16 gi|57640188|ref|YP_182666.1| - 6.3e-82 274.7 0.0 8.2e-82 274.4 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.12 gi|57640188|ref|YP_182666.1| - 6e-15 54.5 0.2 1.7e-14 53.1 0.1 1.8 1 0 0 1 1 1 1 Glycosyl transferase family, helical bundle domain Chorismate_bind PF00425.13 gi|57640189|ref|YP_182667.1| - 1.1e-90 303.4 0.4 4.8e-90 301.3 0.0 2.1 3 0 0 3 3 3 1 chorismate binding enzyme Anth_synt_I_N PF04715.8 gi|57640189|ref|YP_182667.1| - 1.7e-18 66.9 0.5 2e-16 60.2 0.0 3.1 2 1 1 3 3 3 1 Anthranilate synthase component I, N terminal region Col_cuticle_N PF01484.12 gi|57640189|ref|YP_182667.1| - 0.18 11.5 0.0 0.34 10.6 0.0 1.3 1 0 0 1 1 1 0 Nematode cuticle collagen N-terminal domain GATase PF00117.23 gi|57640190|ref|YP_182668.1| - 1.8e-46 158.0 0.0 2.1e-46 157.8 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|57640190|ref|YP_182668.1| - 1.9e-11 43.8 0.1 5.7e-11 42.2 0.1 1.7 1 1 0 1 1 1 1 Peptidase C26 PRAI PF00697.17 gi|57640191|ref|YP_182669.1| - 5.3e-32 110.9 0.0 6.1e-32 110.7 0.0 1.0 1 0 0 1 1 1 1 N-(5'phosphoribosyl)anthranilate (PRA) isomerase Pterin_bind PF00809.17 gi|57640191|ref|YP_182669.1| - 0.021 14.2 0.1 0.049 12.9 0.0 1.7 1 1 0 1 1 1 0 Pterin binding enzyme DUF4287 PF14117.1 gi|57640191|ref|YP_182669.1| - 0.05 13.2 0.0 0.11 12.1 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4287) PALP PF00291.20 gi|57640192|ref|YP_182670.1| - 2e-44 152.0 0.4 2.6e-44 151.7 0.2 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Trp_syntA PF00290.15 gi|57640193|ref|YP_182671.1| - 3.7e-86 287.8 0.0 4.8e-86 287.4 0.0 1.0 1 0 0 1 1 1 1 Tryptophan synthase alpha chain His_biosynth PF00977.16 gi|57640193|ref|YP_182671.1| - 1.7e-08 33.9 0.0 9e-08 31.6 0.0 1.9 1 1 1 2 2 2 1 Histidine biosynthesis protein PcrB PF01884.12 gi|57640193|ref|YP_182671.1| - 5e-06 25.9 0.0 1.2e-05 24.6 0.0 1.6 2 0 0 2 2 2 1 PcrB family Ribul_P_3_epim PF00834.14 gi|57640193|ref|YP_182671.1| - 2.9e-05 23.2 0.0 4.4e-05 22.6 0.0 1.2 1 0 0 1 1 1 1 Ribulose-phosphate 3 epimerase family TMP-TENI PF02581.12 gi|57640193|ref|YP_182671.1| - 0.0032 16.5 0.0 0.0082 15.2 0.0 1.6 2 0 0 2 2 2 1 Thiamine monophosphate synthase/TENI FMN_dh PF01070.13 gi|57640193|ref|YP_182671.1| - 0.0078 15.1 0.0 0.012 14.4 0.0 1.3 1 0 0 1 1 1 1 FMN-dependent dehydrogenase IGPS PF00218.16 gi|57640193|ref|YP_182671.1| - 0.015 14.4 0.0 0.17 10.8 0.0 2.0 2 0 0 2 2 2 0 Indole-3-glycerol phosphate synthase IMPDH PF00478.20 gi|57640193|ref|YP_182671.1| - 0.03 13.1 0.0 0.03 13.1 0.0 1.1 1 0 0 1 1 1 0 IMP dehydrogenase / GMP reductase domain PA PF02225.17 gi|57640193|ref|YP_182671.1| - 0.035 13.7 0.0 2.5 7.8 0.0 2.3 2 0 0 2 2 2 0 PA domain HisG_C PF08029.6 gi|57640193|ref|YP_182671.1| - 0.061 13.2 0.2 7.7 6.5 0.0 2.5 2 0 0 2 2 2 0 HisG, C-terminal domain NMO PF03060.10 gi|57640193|ref|YP_182671.1| - 0.064 12.3 0.0 0.11 11.6 0.0 1.3 1 0 0 1 1 1 0 Nitronate monooxygenase QRPTase_C PF01729.14 gi|57640193|ref|YP_182671.1| - 0.074 12.5 0.0 0.16 11.4 0.0 1.5 1 0 0 1 1 1 0 Quinolinate phosphoribosyl transferase, C-terminal domain Radical_SAM PF04055.16 gi|57640193|ref|YP_182671.1| - 0.086 13.0 0.0 0.68 10.0 0.0 2.2 1 1 1 2 2 2 0 Radical SAM superfamily NanE PF04131.9 gi|57640193|ref|YP_182671.1| - 0.11 11.4 0.0 0.16 10.9 0.0 1.2 1 0 0 1 1 1 0 Putative N-acetylmannosamine-6-phosphate epimerase Peripla_BP_6 PF13458.1 gi|57640193|ref|YP_182671.1| - 0.15 11.3 0.0 0.27 10.5 0.0 1.4 2 0 0 2 2 2 0 Periplasmic binding protein PDH PF02153.12 gi|57640194|ref|YP_182672.1| - 1.2e-12 47.2 0.0 1.5e-12 46.9 0.0 1.2 1 0 0 1 1 1 1 Prephenate dehydrogenase 2-Hacid_dh_C PF02826.14 gi|57640194|ref|YP_182672.1| - 0.0018 17.4 0.0 0.0032 16.6 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Gp_dh_N PF00044.19 gi|57640194|ref|YP_182672.1| - 0.044 13.7 0.0 0.064 13.2 0.0 1.4 1 0 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DUF1268 PF06896.6 gi|57640194|ref|YP_182672.1| - 0.076 13.3 0.0 0.17 12.2 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1268) Nif11 PF07862.6 gi|57640194|ref|YP_182672.1| - 0.096 12.6 0.7 0.5 10.3 0.1 2.5 3 0 0 3 3 3 0 Nitrogen fixation protein of unknown function Aminotran_1_2 PF00155.16 gi|57640195|ref|YP_182673.1| - 7.2e-40 137.0 0.0 9.4e-40 136.6 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II Alliinase_C PF04864.8 gi|57640195|ref|YP_182673.1| - 0.0066 15.1 0.0 0.01 14.5 0.0 1.3 1 0 0 1 1 1 1 Allinase CM_2 PF01817.16 gi|57640196|ref|YP_182674.1| - 3.4e-08 33.4 0.1 4.8e-08 32.9 0.1 1.3 1 1 0 1 1 1 1 Chorismate mutase type II Chorismate_synt PF01264.16 gi|57640197|ref|YP_182675.1| - 4.7e-127 423.2 0.0 5.3e-127 423.0 0.0 1.0 1 0 0 1 1 1 1 Chorismate synthase EPSP_synthase PF00275.15 gi|57640198|ref|YP_182676.1| - 1.2e-99 333.5 0.0 1.4e-99 333.3 0.0 1.0 1 0 0 1 1 1 1 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) GHMP_kinases_N PF00288.21 gi|57640199|ref|YP_182677.1| - 5e-14 52.1 5.5 3.2e-13 49.5 1.0 3.1 3 0 0 3 3 3 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|57640199|ref|YP_182677.1| - 0.0032 17.6 0.2 0.026 14.7 0.0 2.3 2 0 0 2 2 2 1 GHMP kinases C terminal Shikimate_dh_N PF08501.6 gi|57640200|ref|YP_182678.1| - 9.8e-31 105.6 0.0 1.6e-30 104.9 0.0 1.3 1 0 0 1 1 1 1 Shikimate dehydrogenase substrate binding domain Shikimate_DH PF01488.15 gi|57640200|ref|YP_182678.1| - 3.2e-13 49.9 0.0 4.8e-13 49.3 0.0 1.2 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase NAD_binding_10 PF13460.1 gi|57640200|ref|YP_182678.1| - 1.6e-07 31.5 0.0 1.2e-06 28.6 0.0 2.0 2 0 0 2 2 2 1 NADH(P)-binding TrkA_N PF02254.13 gi|57640200|ref|YP_182678.1| - 6.9e-06 26.0 0.0 1e-05 25.5 0.0 1.4 1 0 0 1 1 1 1 TrkA-N domain Saccharop_dh PF03435.13 gi|57640200|ref|YP_182678.1| - 9.8e-06 24.7 0.0 1.3e-05 24.3 0.0 1.1 1 0 0 1 1 1 1 Saccharopine dehydrogenase ApbA PF02558.11 gi|57640200|ref|YP_182678.1| - 2.3e-05 23.8 0.0 3.5e-05 23.2 0.0 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA F420_oxidored PF03807.12 gi|57640200|ref|YP_182678.1| - 7.7e-05 23.0 0.1 0.00014 22.1 0.1 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent GARS_N PF02844.10 gi|57640200|ref|YP_182678.1| - 0.0092 16.4 0.0 0.016 15.6 0.0 1.4 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, N domain 2-Hacid_dh_C PF02826.14 gi|57640200|ref|YP_182678.1| - 0.011 14.8 0.1 0.018 14.1 0.0 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FMO-like PF00743.14 gi|57640200|ref|YP_182678.1| - 0.012 13.8 0.0 0.024 12.8 0.0 1.4 2 0 0 2 2 2 0 Flavin-binding monooxygenase-like NAD_binding_7 PF13241.1 gi|57640200|ref|YP_182678.1| - 0.034 14.4 0.0 0.053 13.7 0.0 1.3 1 0 0 1 1 1 0 Putative NAD(P)-binding DAO PF01266.19 gi|57640200|ref|YP_182678.1| - 0.039 12.8 0.0 0.063 12.1 0.0 1.3 1 0 0 1 1 1 0 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|57640200|ref|YP_182678.1| - 0.045 12.6 0.0 0.068 12.0 0.0 1.2 1 0 0 1 1 1 0 FAD binding domain DUF1188 PF06690.6 gi|57640200|ref|YP_182678.1| - 0.049 12.7 0.0 0.069 12.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1188) NAD_binding_2 PF03446.10 gi|57640200|ref|YP_182678.1| - 0.092 12.5 0.0 0.15 11.8 0.0 1.3 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase CoA_binding PF02629.14 gi|57640200|ref|YP_182678.1| - 0.13 12.7 0.0 3.1 8.3 0.0 2.3 2 0 0 2 2 2 0 CoA binding domain DHquinase_I PF01487.10 gi|57640201|ref|YP_182679.1| - 1.2e-50 172.3 0.0 1.4e-50 172.0 0.0 1.0 1 0 0 1 1 1 1 Type I 3-dehydroquinase Radical_SAM PF04055.16 gi|57640201|ref|YP_182679.1| - 0.0086 16.2 0.0 0.026 14.6 0.0 1.7 2 0 0 2 2 2 1 Radical SAM superfamily Response_reg PF00072.19 gi|57640201|ref|YP_182679.1| - 0.011 15.7 0.0 0.7 9.9 0.0 2.1 2 0 0 2 2 2 0 Response regulator receiver domain DHQ_synthase PF01761.15 gi|57640202|ref|YP_182680.1| - 5.3e-82 274.6 0.0 6.6e-82 274.3 0.0 1.1 1 0 0 1 1 1 1 3-dehydroquinate synthase Fe-ADH_2 PF13685.1 gi|57640202|ref|YP_182680.1| - 1.4e-07 31.1 0.0 2.1e-07 30.4 0.0 1.2 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.14 gi|57640202|ref|YP_182680.1| - 3.5e-06 25.9 0.0 0.00056 18.6 0.0 2.3 2 0 0 2 2 2 2 Iron-containing alcohol dehydrogenase DAHP_synth_1 PF00793.15 gi|57640203|ref|YP_182681.1| - 3.8e-83 278.3 0.0 5e-83 277.9 0.0 1.0 1 0 0 1 1 1 1 DAHP synthetase I family NeuB PF03102.9 gi|57640203|ref|YP_182681.1| - 3.6e-06 26.3 0.0 2e-05 23.8 0.0 1.8 2 0 0 2 2 2 1 NeuB family Transket_pyr PF02779.19 gi|57640204|ref|YP_182682.1| - 1.3e-39 135.5 0.1 5.9e-39 133.3 0.0 1.9 2 1 0 2 2 2 1 Transketolase, pyrimidine binding domain Transketolase_C PF02780.15 gi|57640204|ref|YP_182682.1| - 7.7e-29 100.1 0.2 1.4e-28 99.2 0.1 1.5 1 0 0 1 1 1 1 Transketolase, C-terminal domain Transketolase_N PF00456.16 gi|57640205|ref|YP_182683.1| - 1.8e-36 125.5 0.0 3.6e-36 124.6 0.0 1.3 1 1 0 1 1 1 1 Transketolase, thiamine diphosphate binding domain E1_dh PF00676.15 gi|57640205|ref|YP_182683.1| - 3.6e-07 29.1 0.0 6e-07 28.4 0.0 1.3 1 0 0 1 1 1 1 Dehydrogenase E1 component TPP_enzyme_C PF02775.16 gi|57640205|ref|YP_182683.1| - 5.6e-07 29.2 0.1 2.3e-06 27.2 0.1 1.8 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DXP_synthase_N PF13292.1 gi|57640205|ref|YP_182683.1| - 2.4e-06 26.6 0.0 3.6e-06 26.1 0.0 1.3 1 0 0 1 1 1 1 1-deoxy-D-xylulose-5-phosphate synthase XFP_N PF09364.5 gi|57640205|ref|YP_182683.1| - 7.1e-05 21.5 0.0 8.6e-05 21.2 0.0 1.2 1 0 0 1 1 1 1 XFP N-terminal domain Sigma70_r4 PF04545.11 gi|57640206|ref|YP_182684.1| - 0.52 9.6 3.7 4.1 6.7 0.0 2.7 3 0 0 3 3 3 0 Sigma-70, region 4 F420_oxidored PF03807.12 gi|57640207|ref|YP_182685.1| - 8.5e-25 87.0 1.8 9.7e-25 86.8 1.2 1.0 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.10 gi|57640207|ref|YP_182685.1| - 3.3e-10 40.0 0.4 3.6e-10 39.9 0.3 1.0 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_10 PF13460.1 gi|57640207|ref|YP_182685.1| - 9.9e-09 35.4 0.5 1.1e-08 35.3 0.4 1.1 1 0 0 1 1 1 1 NADH(P)-binding NAD_Gly3P_dh_N PF01210.18 gi|57640207|ref|YP_182685.1| - 3.9e-08 33.1 3.3 4.3e-06 26.5 2.3 2.0 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ApbA PF02558.11 gi|57640207|ref|YP_182685.1| - 5.1e-08 32.4 1.3 1.2e-07 31.2 0.9 1.5 1 1 0 1 1 1 1 Ketopantoate reductase PanE/ApbA UDPG_MGDP_dh_N PF03721.9 gi|57640207|ref|YP_182685.1| - 3e-07 30.0 1.2 4.3e-06 26.2 0.2 2.2 1 1 1 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NmrA PF05368.8 gi|57640207|ref|YP_182685.1| - 8.8e-07 28.4 1.1 1e-06 28.2 0.8 1.1 1 0 0 1 1 1 1 NmrA-like family IlvN PF07991.7 gi|57640207|ref|YP_182685.1| - 1.7e-06 27.5 0.2 1.8e-06 27.4 0.1 1.0 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain TrkA_N PF02254.13 gi|57640207|ref|YP_182685.1| - 9.2e-06 25.6 1.0 2.4e-05 24.3 0.3 1.8 1 1 1 2 2 2 1 TrkA-N domain 2-Hacid_dh_C PF02826.14 gi|57640207|ref|YP_182685.1| - 1e-05 24.7 0.1 1.2e-05 24.5 0.1 1.1 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 3HCDH_N PF02737.13 gi|57640207|ref|YP_182685.1| - 2e-05 24.3 2.4 4.8e-05 23.0 1.6 1.7 1 1 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain adh_short PF00106.20 gi|57640207|ref|YP_182685.1| - 3e-05 24.0 0.9 3.4e-05 23.8 0.6 1.1 1 0 0 1 1 1 1 short chain dehydrogenase Epimerase PF01370.16 gi|57640207|ref|YP_182685.1| - 7.5e-05 22.2 0.1 8.2e-05 22.1 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family PDH PF02153.12 gi|57640207|ref|YP_182685.1| - 7.8e-05 21.6 0.2 8.9e-05 21.4 0.1 1.0 1 0 0 1 1 1 1 Prephenate dehydrogenase Shikimate_DH PF01488.15 gi|57640207|ref|YP_182685.1| - 0.00024 21.2 1.4 0.00032 20.8 0.8 1.2 1 1 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase Saccharop_dh PF03435.13 gi|57640207|ref|YP_182685.1| - 0.00039 19.5 0.3 0.00039 19.5 0.2 1.1 1 0 0 1 1 1 1 Saccharopine dehydrogenase Rossmann-like PF10727.4 gi|57640207|ref|YP_182685.1| - 0.00041 20.0 0.4 0.0005 19.8 0.3 1.2 1 0 0 1 1 1 1 Rossmann-like domain DAO PF01266.19 gi|57640207|ref|YP_182685.1| - 0.00043 19.3 2.7 0.00052 19.0 1.7 1.2 1 1 0 1 1 1 1 FAD dependent oxidoreductase CoA_binding_2 PF13380.1 gi|57640207|ref|YP_182685.1| - 0.0012 19.0 0.3 0.0014 18.7 0.2 1.1 1 0 0 1 1 1 1 CoA binding domain Semialdhyde_dh PF01118.19 gi|57640207|ref|YP_182685.1| - 0.0022 18.3 0.9 0.0038 17.5 0.6 1.4 1 1 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain adh_short_C2 PF13561.1 gi|57640207|ref|YP_182685.1| - 0.0037 17.0 0.1 0.0042 16.8 0.1 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase DUF4235 PF14019.1 gi|57640207|ref|YP_182685.1| - 0.012 15.4 1.2 0.016 15.0 0.8 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF4235) NAD_binding_8 PF13450.1 gi|57640207|ref|YP_182685.1| - 0.016 15.2 0.4 0.022 14.8 0.3 1.4 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain RmlD_sub_bind PF04321.12 gi|57640207|ref|YP_182685.1| - 0.022 13.6 0.0 0.022 13.6 0.0 1.2 1 0 0 1 1 1 0 RmlD substrate binding domain Pyr_redox PF00070.22 gi|57640207|ref|YP_182685.1| - 0.027 14.8 4.2 0.058 13.8 2.9 1.9 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase ThiF PF00899.16 gi|57640207|ref|YP_182685.1| - 0.031 14.1 2.5 0.042 13.6 1.3 1.5 1 1 1 2 2 2 0 ThiF family ADH_zinc_N PF00107.21 gi|57640207|ref|YP_182685.1| - 0.034 13.7 0.5 0.039 13.5 0.4 1.2 1 0 0 1 1 1 0 Zinc-binding dehydrogenase Glyco_transf_28 PF03033.15 gi|57640207|ref|YP_182685.1| - 0.036 13.8 0.3 0.054 13.2 0.2 1.4 1 1 0 1 1 1 0 Glycosyltransferase family 28 N-terminal domain Pyr_redox_2 PF07992.9 gi|57640207|ref|YP_182685.1| - 0.039 13.8 2.4 0.039 13.8 1.7 1.2 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Ldh_1_N PF00056.18 gi|57640207|ref|YP_182685.1| - 0.05 13.4 1.3 0.065 13.0 0.9 1.5 1 1 0 1 1 1 0 lactate/malate dehydrogenase, NAD binding domain CPSase_L_chain PF00289.17 gi|57640207|ref|YP_182685.1| - 0.053 13.6 1.0 0.2 11.8 0.3 1.8 1 1 1 2 2 2 0 Carbamoyl-phosphate synthase L chain, N-terminal domain AlaDh_PNT_C PF01262.16 gi|57640207|ref|YP_182685.1| - 0.059 12.9 0.3 0.066 12.7 0.2 1.1 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain UPF0146 PF03686.8 gi|57640207|ref|YP_182685.1| - 0.069 12.9 0.2 0.083 12.7 0.1 1.2 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0146) DapB_N PF01113.15 gi|57640207|ref|YP_182685.1| - 0.075 12.9 1.1 0.1 12.5 0.8 1.4 1 1 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus NAD_binding_7 PF13241.1 gi|57640207|ref|YP_182685.1| - 0.13 12.4 0.7 0.15 12.2 0.5 1.1 1 0 0 1 1 1 0 Putative NAD(P)-binding GFO_IDH_MocA PF01408.17 gi|57640207|ref|YP_182685.1| - 0.14 12.6 0.4 0.18 12.3 0.3 1.3 1 1 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold P5CR_dimer PF14748.1 gi|57640208|ref|YP_182686.1| - 2.5e-37 127.1 0.1 3.1e-37 126.8 0.0 1.1 1 0 0 1 1 1 1 Pyrroline-5-carboxylate reductase dimerisation Peptidase_M20 PF01546.23 gi|57640209|ref|YP_182687.1| - 2.3e-24 85.9 0.0 3.1e-24 85.5 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M42 PF05343.9 gi|57640209|ref|YP_182687.1| - 0.11 11.2 0.0 0.22 10.2 0.0 1.5 1 0 0 1 1 1 0 M42 glutamyl aminopeptidase Aminotran_3 PF00202.16 gi|57640210|ref|YP_182688.1| - 8.9e-89 297.6 0.0 1.2e-88 297.1 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-III DegT_DnrJ_EryC1 PF01041.12 gi|57640210|ref|YP_182688.1| - 0.33 9.9 1.1 1.2 8.1 0.8 1.8 1 1 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family AA_kinase PF00696.23 gi|57640211|ref|YP_182689.1| - 9.2e-18 64.6 1.8 1.1e-17 64.4 1.2 1.1 1 0 0 1 1 1 1 Amino acid kinase family Isochorismatase PF00857.15 gi|57640211|ref|YP_182689.1| - 0.0078 16.1 0.0 2.8 7.8 0.0 2.3 1 1 1 2 2 2 2 Isochorismatase family NTF-like PF14540.1 gi|57640211|ref|YP_182689.1| - 0.023 14.2 0.1 0.045 13.3 0.1 1.5 1 0 0 1 1 1 0 Nucleotidyltransferase-like Semialdhyde_dh PF01118.19 gi|57640212|ref|YP_182690.1| - 1.4e-30 106.0 0.0 2.4e-30 105.3 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.13 gi|57640212|ref|YP_182690.1| - 2.8e-06 27.3 0.0 4.3e-06 26.7 0.0 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain GFO_IDH_MocA PF01408.17 gi|57640212|ref|YP_182690.1| - 0.0026 18.2 0.2 0.0091 16.5 0.0 1.8 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold DapB_N PF01113.15 gi|57640212|ref|YP_182690.1| - 0.012 15.5 0.0 0.021 14.7 0.0 1.4 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus Saccharop_dh PF03435.13 gi|57640212|ref|YP_182690.1| - 0.04 12.9 0.0 0.07 12.1 0.0 1.4 1 0 0 1 1 1 0 Saccharopine dehydrogenase NAD_binding_10 PF13460.1 gi|57640212|ref|YP_182690.1| - 0.13 12.2 0.0 0.25 11.3 0.0 1.4 1 0 0 1 1 1 0 NADH(P)-binding RimK PF08443.6 gi|57640213|ref|YP_182691.1| - 2.8e-60 203.0 0.0 5.3e-60 202.1 0.0 1.4 2 0 0 2 2 2 1 RimK-like ATP-grasp domain ATP-grasp_4 PF13535.1 gi|57640213|ref|YP_182691.1| - 6.5e-11 42.2 0.0 1e-10 41.6 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_3 PF02655.9 gi|57640213|ref|YP_182691.1| - 2.2e-05 24.4 0.0 4.2e-05 23.4 0.0 1.4 1 1 0 1 1 1 1 ATP-grasp domain ATP-grasp PF02222.17 gi|57640213|ref|YP_182691.1| - 0.014 14.7 0.0 5.7 6.2 0.0 2.2 2 0 0 2 2 2 0 ATP-grasp domain zinc_ribbon_2 PF13240.1 gi|57640214|ref|YP_182692.1| - 1.1e-05 24.7 5.5 0.00054 19.3 1.3 2.1 1 1 1 2 2 2 2 zinc-ribbon domain DNA_ligase_ZBD PF03119.11 gi|57640214|ref|YP_182692.1| - 1.6e-05 24.4 10.0 0.0048 16.5 1.3 2.3 2 0 0 2 2 2 2 NAD-dependent DNA ligase C4 zinc finger domain zf-TFIIB PF13453.1 gi|57640214|ref|YP_182692.1| - 3.7e-05 22.8 1.3 0.00014 20.9 0.9 1.8 1 1 1 2 2 2 2 Transcription factor zinc-finger zf-ribbon_3 PF13248.1 gi|57640214|ref|YP_182692.1| - 8.7e-05 21.6 1.0 0.21 10.8 0.1 2.2 2 0 0 2 2 2 2 zinc-ribbon domain Rad50_zn_hook PF04423.9 gi|57640214|ref|YP_182692.1| - 0.00066 19.0 3.3 0.18 11.3 0.2 2.3 1 1 1 2 2 2 2 Rad50 zinc hook motif Zn-ribbon_8 PF09723.5 gi|57640214|ref|YP_182692.1| - 0.0011 18.8 0.6 0.76 9.7 0.0 2.1 2 0 0 2 2 2 1 Zinc ribbon domain HypA PF01155.14 gi|57640214|ref|YP_182692.1| - 0.0026 17.4 0.2 0.0028 17.3 0.2 1.1 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family Prim_Zn_Ribbon PF08273.7 gi|57640214|ref|YP_182692.1| - 0.003 17.5 5.8 0.52 10.4 0.6 2.1 2 0 0 2 2 2 2 Zinc-binding domain of primase-helicase zf-Di19 PF05605.7 gi|57640214|ref|YP_182692.1| - 0.003 17.6 0.5 1 9.5 0.0 2.1 1 1 1 2 2 2 1 Drought induced 19 protein (Di19), zinc-binding OrfB_Zn_ribbon PF07282.6 gi|57640214|ref|YP_182692.1| - 0.0032 17.0 0.2 0.0042 16.7 0.2 1.2 1 0 0 1 1 1 1 Putative transposase DNA-binding domain zf-NADH-PPase PF09297.6 gi|57640214|ref|YP_182692.1| - 0.0037 16.7 0.2 1.6 8.3 0.0 2.1 2 0 0 2 2 2 1 NADH pyrophosphatase zinc ribbon domain zf-C4_Topoisom PF01396.14 gi|57640214|ref|YP_182692.1| - 0.0043 16.5 1.8 1.3 8.6 0.1 2.1 2 0 0 2 2 2 1 Topoisomerase DNA binding C4 zinc finger Zn_Tnp_IS1595 PF12760.2 gi|57640214|ref|YP_182692.1| - 0.0059 16.3 0.7 2.7 7.8 0.0 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Ogr_Delta PF04606.7 gi|57640214|ref|YP_182692.1| - 0.0066 16.0 0.1 3.3 7.4 0.0 2.1 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger DZR PF12773.2 gi|57640214|ref|YP_182692.1| - 0.0098 15.6 0.3 0.017 14.9 0.2 1.4 1 1 0 1 1 1 1 Double zinc ribbon Prok-RING_1 PF14446.1 gi|57640214|ref|YP_182692.1| - 0.01 15.5 1.9 0.019 14.6 1.3 1.4 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 Cys_rich_CPXG PF14255.1 gi|57640214|ref|YP_182692.1| - 0.011 15.5 3.1 0.21 11.4 2.2 2.1 1 1 1 2 2 2 0 Cysteine-rich CPXCG zinc_ribbon_5 PF13719.1 gi|57640214|ref|YP_182692.1| - 0.011 15.3 1.0 0.24 11.0 0.7 2.1 1 1 1 2 2 2 0 zinc-ribbon domain Prok-RING_4 PF14447.1 gi|57640214|ref|YP_182692.1| - 0.011 15.2 0.8 3 7.4 0.1 2.1 2 0 0 2 2 2 0 Prokaryotic RING finger family 4 TF_Zn_Ribbon PF08271.7 gi|57640214|ref|YP_182692.1| - 0.012 14.9 3.2 1.5 8.2 0.1 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding RNA_POL_M_15KD PF02150.11 gi|57640214|ref|YP_182692.1| - 0.013 15.1 0.2 0.023 14.3 0.1 1.5 1 1 0 1 1 1 0 RNA polymerases M/15 Kd subunit DUF329 PF03884.9 gi|57640214|ref|YP_182692.1| - 0.014 14.9 1.6 3 7.4 0.1 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF329) Cys_rich_CPCC PF14206.1 gi|57640214|ref|YP_182692.1| - 0.015 14.8 0.1 0.017 14.6 0.1 1.2 1 0 0 1 1 1 0 Cysteine-rich CPCC DUF4428 PF14471.1 gi|57640214|ref|YP_182692.1| - 0.016 14.9 0.7 4.4 7.1 0.0 2.3 2 1 0 2 2 2 0 Domain of unknown function (DUF4428) zf-C3HC4_3 PF13920.1 gi|57640214|ref|YP_182692.1| - 0.017 14.7 0.7 3 7.5 0.1 2.1 2 0 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) zinc-ribbons_6 PF07191.7 gi|57640214|ref|YP_182692.1| - 0.018 14.8 0.8 0.078 12.7 0.5 1.8 1 1 0 1 1 1 0 zinc-ribbons Cys_rich_KTR PF14205.1 gi|57640214|ref|YP_182692.1| - 0.018 14.4 0.4 2.8 7.4 0.0 2.2 2 0 0 2 2 2 0 Cysteine-rich KTR zf-CSL PF05207.8 gi|57640214|ref|YP_182692.1| - 0.019 14.4 1.7 0.019 14.4 1.2 1.4 1 1 0 1 1 1 0 CSL zinc finger DUF3797 PF12677.2 gi|57640214|ref|YP_182692.1| - 0.021 14.4 2.6 2.1 8.0 0.1 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) zinc_ribbon_4 PF13717.1 gi|57640214|ref|YP_182692.1| - 0.023 14.3 1.3 0.49 10.1 1.0 2.1 1 1 1 2 2 2 0 zinc-ribbon domain zf-ISL3 PF14690.1 gi|57640214|ref|YP_182692.1| - 0.025 14.5 0.1 6.5 6.8 0.0 2.1 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 IBR PF01485.16 gi|57640214|ref|YP_182692.1| - 0.026 14.3 0.3 0.033 14.0 0.2 1.2 1 0 0 1 1 1 0 IBR domain Lar_restr_allev PF14354.1 gi|57640214|ref|YP_182692.1| - 0.028 14.7 4.5 0.17 12.2 3.1 2.0 1 1 0 1 1 1 0 Restriction alleviation protein Lar TerY-C PF15616.1 gi|57640214|ref|YP_182692.1| - 0.031 14.2 1.6 0.75 9.7 0.0 2.0 1 1 1 2 2 2 0 TerY-C metal binding domain A2L_zn_ribbon PF08792.5 gi|57640214|ref|YP_182692.1| - 0.033 13.6 0.3 1.2 8.6 0.0 2.1 2 0 0 2 2 2 0 A2L zinc ribbon domain zf-IS66 PF13005.2 gi|57640214|ref|YP_182692.1| - 0.034 14.1 5.0 0.74 9.8 0.2 2.3 1 1 1 2 2 2 0 zinc-finger binding domain of transposase IS66 Desulfoferrod_N PF06397.7 gi|57640214|ref|YP_182692.1| - 0.036 13.4 4.2 0.96 8.8 0.4 2.1 1 1 1 2 2 2 0 Desulfoferrodoxin, N-terminal domain UPF0547 PF10571.4 gi|57640214|ref|YP_182692.1| - 0.04 13.6 7.4 0.09 12.4 5.1 1.7 1 1 1 2 2 2 0 Uncharacterised protein family UPF0547 CpXC PF14353.1 gi|57640214|ref|YP_182692.1| - 0.04 13.8 1.3 4.8 7.1 0.1 2.0 1 1 1 2 2 2 0 CpXC protein Nudix_N_2 PF14803.1 gi|57640214|ref|YP_182692.1| - 0.047 13.3 2.5 5 6.9 0.1 2.2 2 0 0 2 2 2 0 Nudix N-terminal Elf1 PF05129.8 gi|57640214|ref|YP_182692.1| - 0.061 13.0 0.7 0.11 12.2 0.5 1.5 1 1 0 1 1 1 0 Transcription elongation factor Elf1 like zf-H2C2_2 PF13465.1 gi|57640214|ref|YP_182692.1| - 0.062 13.6 0.6 10 6.6 0.0 2.1 2 0 0 2 2 2 0 Zinc-finger double domain Sgf11 PF08209.6 gi|57640214|ref|YP_182692.1| - 0.064 12.5 0.4 7.9 5.8 0.0 2.1 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) HNH PF01844.18 gi|57640214|ref|YP_182692.1| - 0.072 12.9 0.5 3.8 7.4 0.1 2.1 2 0 0 2 2 2 0 HNH endonuclease zf-HYPF PF07503.7 gi|57640214|ref|YP_182692.1| - 0.073 12.4 0.5 3.9 6.9 0.0 2.1 2 0 0 2 2 2 0 HypF finger RecR PF02132.10 gi|57640214|ref|YP_182692.1| - 0.079 12.4 1.4 2.2 7.8 0.1 2.2 2 0 0 2 2 2 0 RecR protein Tmemb_55A PF09788.4 gi|57640214|ref|YP_182692.1| - 0.079 12.0 1.1 0.086 11.9 0.8 1.0 1 0 0 1 1 1 0 Transmembrane protein 55A Trm112p PF03966.11 gi|57640214|ref|YP_182692.1| - 0.086 13.2 0.2 0.34 11.3 0.0 1.8 2 0 0 2 2 2 0 Trm112p-like protein zf-Mss51 PF13824.1 gi|57640214|ref|YP_182692.1| - 0.087 12.6 0.5 0.17 11.7 0.3 1.5 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 DUF2225 PF09986.4 gi|57640214|ref|YP_182692.1| - 0.1 12.0 1.8 2.5 7.5 0.1 2.0 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2225) DUF2089 PF09862.4 gi|57640214|ref|YP_182692.1| - 0.11 12.2 0.4 9.6 6.0 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2089) RNHCP PF12647.2 gi|57640214|ref|YP_182692.1| - 0.13 12.1 0.1 0.14 12.0 0.1 1.1 1 0 0 1 1 1 0 RNHCP domain PhnA_Zn_Ribbon PF08274.7 gi|57640214|ref|YP_182692.1| - 0.13 12.0 3.3 1.6 8.5 0.2 2.3 2 0 0 2 2 2 0 PhnA Zinc-Ribbon zf-RING_5 PF14634.1 gi|57640214|ref|YP_182692.1| - 0.17 11.6 1.4 9.6 6.0 0.0 2.1 2 0 0 2 2 2 0 zinc-RING finger domain YhfH PF14149.1 gi|57640214|ref|YP_182692.1| - 0.2 11.4 2.2 4.9 7.0 0.2 2.2 2 0 0 2 2 2 0 YhfH-like protein DUF2387 PF09526.5 gi|57640214|ref|YP_182692.1| - 0.2 11.5 0.9 0.23 11.3 0.7 1.2 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) TFIIS_C PF01096.13 gi|57640214|ref|YP_182692.1| - 0.22 11.1 0.7 16 5.2 0.1 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-C2HC_2 PF13913.1 gi|57640214|ref|YP_182692.1| - 0.31 10.7 5.7 3.7 7.3 0.3 2.2 2 0 0 2 2 2 0 zinc-finger of a C2HC-type Zn_Tnp_IS1 PF03811.8 gi|57640214|ref|YP_182692.1| - 0.32 10.5 2.7 9.7 5.7 0.2 2.1 2 0 0 2 2 2 0 InsA N-terminal domain zf-RING_2 PF13639.1 gi|57640214|ref|YP_182692.1| - 0.34 10.7 4.1 8.3 6.3 0.2 2.1 1 1 1 2 2 2 0 Ring finger domain RRN7 PF11781.3 gi|57640214|ref|YP_182692.1| - 0.4 10.2 1.8 13 5.4 0.1 2.2 2 0 0 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 DUF1178 PF06676.6 gi|57640214|ref|YP_182692.1| - 0.55 10.4 3.9 7.7 6.7 0.1 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1178) FdhE PF04216.7 gi|57640214|ref|YP_182692.1| - 1.1 8.9 4.0 2.8 7.5 2.8 1.6 1 1 0 1 1 1 0 Protein involved in formate dehydrogenase formation zf-C2H2_4 PF13894.1 gi|57640214|ref|YP_182692.1| - 1.2 9.6 3.3 25 5.4 0.1 2.5 1 1 1 2 2 2 0 C2H2-type zinc finger DUF2116 PF09889.4 gi|57640214|ref|YP_182692.1| - 1.3 8.8 4.9 3.5 7.5 0.5 2.1 1 1 1 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) zf-tcix PF14952.1 gi|57640214|ref|YP_182692.1| - 2.2 7.7 4.1 5.6 6.3 0.1 2.1 1 1 1 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding Rubredoxin PF00301.15 gi|57640214|ref|YP_182692.1| - 5.5 6.9 9.0 4.8 7.1 0.3 2.5 2 1 1 3 3 2 0 Rubredoxin DUF1610 PF07754.6 gi|57640214|ref|YP_182692.1| - 7.9 6.7 7.8 16 5.7 0.6 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) Iso_dh PF00180.15 gi|57640215|ref|YP_182693.1| - 3.1e-86 289.4 0.0 6e-86 288.5 0.0 1.4 1 1 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase Aconitase_C PF00694.14 gi|57640216|ref|YP_182694.1| - 5.2e-18 65.4 0.0 6.9e-18 65.0 0.0 1.1 1 0 0 1 1 1 1 Aconitase C-terminal domain Aconitase_2_N PF06434.8 gi|57640216|ref|YP_182694.1| - 0.00087 18.7 0.0 0.05 13.0 0.0 2.1 1 1 0 1 1 1 1 Aconitate hydratase 2 N-terminus Aconitase PF00330.15 gi|57640217|ref|YP_182695.1| - 1.6e-49 168.6 3.2 2.9e-24 85.4 0.0 3.3 1 1 2 3 3 3 3 Aconitase family (aconitate hydratase) Flg_bbr_C PF06429.8 gi|57640217|ref|YP_182695.1| - 0.0082 16.0 0.0 0.017 14.9 0.0 1.5 1 0 0 1 1 1 1 Flagellar basal body rod FlgEFG protein C-terminal HMGL-like PF00682.14 gi|57640218|ref|YP_182696.1| - 5.8e-55 186.5 0.0 7.8e-55 186.0 0.0 1.1 1 0 0 1 1 1 1 HMGL-like Nitroreductase PF00881.19 gi|57640219|ref|YP_182697.1| - 2.5e-33 115.2 0.0 3e-33 114.9 0.0 1.1 1 0 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.1 gi|57640219|ref|YP_182697.1| - 0.008 15.3 0.1 0.047 12.8 0.1 2.2 1 1 0 1 1 1 1 Putative TM nitroreductase Arch_ATPase PF01637.13 gi|57640220|ref|YP_182698.1| - 8.9e-08 32.1 0.3 9.4e-08 32.0 0.2 1.0 1 0 0 1 1 1 1 Archaeal ATPase AAA_16 PF13191.1 gi|57640220|ref|YP_182698.1| - 0.089 12.7 0.0 0.092 12.7 0.0 1.0 1 0 0 1 1 1 0 AAA ATPase domain DUF234 PF03008.9 gi|57640221|ref|YP_182699.1| - 7.5e-32 109.4 3.4 1.3e-31 108.7 2.4 1.4 1 0 0 1 1 1 1 Archaea bacterial proteins of unknown function Arch_ATPase PF01637.13 gi|57640221|ref|YP_182699.1| - 4.2e-12 46.2 0.0 9.1e-12 45.1 0.0 1.5 1 0 0 1 1 1 1 Archaeal ATPase DUF4143 PF13635.1 gi|57640221|ref|YP_182699.1| - 0.033 14.3 0.1 0.057 13.6 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4143) HTH_45 PF14947.1 gi|57640221|ref|YP_182699.1| - 0.051 13.3 0.0 0.11 12.3 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix HxlR PF01638.12 gi|57640221|ref|YP_182699.1| - 0.1 12.2 0.0 0.21 11.2 0.0 1.5 1 0 0 1 1 1 0 HxlR-like helix-turn-helix Lactamase_B_2 PF12706.2 gi|57640223|ref|YP_182701.1| - 8.9e-16 58.0 0.0 1.1e-15 57.6 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|57640223|ref|YP_182701.1| - 1.2e-10 41.4 0.2 2.6e-10 40.2 0.1 1.8 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily PFL PF02901.10 gi|57640224|ref|YP_182702.1| - 8.5e-222 738.1 0.0 1.1e-221 737.7 0.0 1.1 1 0 0 1 1 1 1 Pyruvate formate lyase Gly_radical PF01228.16 gi|57640224|ref|YP_182702.1| - 6.6e-27 93.9 0.0 2.3e-26 92.2 0.0 1.9 2 0 0 2 2 2 1 Glycine radical LAGLIDADG_2 PF03161.8 gi|57640224|ref|YP_182702.1| - 0.03 14.2 0.0 0.054 13.3 0.0 1.4 1 0 0 1 1 1 0 LAGLIDADG DNA endonuclease family Radical_SAM PF04055.16 gi|57640225|ref|YP_182703.1| - 5.9e-25 88.3 6.5 1.3e-24 87.2 2.8 2.5 2 1 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|57640225|ref|YP_182703.1| - 1.5e-13 51.0 2.7 1.5e-12 47.7 1.9 2.5 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4 PF00037.22 gi|57640225|ref|YP_182703.1| - 2.7e-13 48.8 10.4 1e-06 28.0 1.5 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|57640225|ref|YP_182703.1| - 6.2e-09 35.5 8.7 6.2e-09 35.5 6.0 1.7 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|57640225|ref|YP_182703.1| - 7.5e-09 35.8 12.9 7.5e-09 35.8 8.9 1.8 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|57640225|ref|YP_182703.1| - 8.5e-09 35.5 11.3 1.8e-08 34.5 7.9 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|57640225|ref|YP_182703.1| - 1.1e-08 35.7 5.8 0.0018 18.9 0.1 2.5 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_6 PF12837.2 gi|57640225|ref|YP_182703.1| - 2e-08 33.7 14.1 0.00019 21.1 1.9 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|57640225|ref|YP_182703.1| - 6.8e-08 32.2 9.9 1.4e-07 31.2 6.9 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_14 PF13394.1 gi|57640225|ref|YP_182703.1| - 8.6e-08 32.2 3.5 6e-05 23.0 2.5 2.4 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_2 PF12797.2 gi|57640225|ref|YP_182703.1| - 1.6e-07 30.7 11.0 0.00025 20.7 0.7 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|57640225|ref|YP_182703.1| - 0.00026 21.0 18.1 0.00076 19.6 1.2 2.6 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_11 PF13247.1 gi|57640225|ref|YP_182703.1| - 0.0006 19.6 5.4 0.0006 19.6 3.7 1.6 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|57640225|ref|YP_182703.1| - 0.0014 18.5 12.0 0.0014 18.5 8.3 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|57640225|ref|YP_182703.1| - 0.0029 17.9 10.8 0.42 11.0 2.2 2.6 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|57640225|ref|YP_182703.1| - 0.019 15.3 11.2 5.9 7.3 1.2 2.5 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|57640225|ref|YP_182703.1| - 0.029 14.9 13.4 0.1 13.1 2.5 2.5 1 1 1 2 2 2 0 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|57640225|ref|YP_182703.1| - 0.075 13.6 5.8 0.075 13.6 4.0 2.6 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_18 PF13746.1 gi|57640225|ref|YP_182703.1| - 4.9 7.6 20.7 0.26 11.7 2.9 2.7 1 1 1 2 2 2 0 4Fe-4S dicluster domain DUF4125 PF13526.1 gi|57640226|ref|YP_182704.1| - 7.5e-49 165.7 1.8 9.9e-49 165.3 1.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF4125) APC2 PF08672.6 gi|57640226|ref|YP_182704.1| - 0.013 15.6 0.3 0.65 10.2 0.0 2.4 2 0 0 2 2 2 0 Anaphase promoting complex (APC) subunit 2 Mut7-C PF01927.11 gi|57640227|ref|YP_182705.1| - 2.3e-45 154.1 0.0 2.9e-45 153.8 0.0 1.0 1 0 0 1 1 1 1 Mut7-C RNAse domain Rubredoxin PF00301.15 gi|57640227|ref|YP_182705.1| - 0.0042 16.9 0.5 3.5 7.5 0.0 2.3 2 0 0 2 2 2 2 Rubredoxin DUF35_N PF12172.3 gi|57640227|ref|YP_182705.1| - 0.0044 16.8 3.4 1 9.3 0.2 2.6 2 0 0 2 2 2 2 Rubredoxin-like zinc ribbon domain (DUF35_N) G3P_antiterm PF04309.7 gi|57640227|ref|YP_182705.1| - 0.023 13.7 0.0 0.029 13.4 0.0 1.1 1 0 0 1 1 1 0 Glycerol-3-phosphate responsive antiterminator zf-IS66 PF13005.2 gi|57640227|ref|YP_182705.1| - 0.042 13.8 3.8 0.68 9.9 2.6 2.5 1 1 0 1 1 1 0 zinc-finger binding domain of transposase IS66 TF_Zn_Ribbon PF08271.7 gi|57640227|ref|YP_182705.1| - 0.043 13.1 3.4 1.4 8.3 0.1 2.9 3 0 0 3 3 3 0 TFIIB zinc-binding Zn-ribbon_8 PF09723.5 gi|57640227|ref|YP_182705.1| - 0.14 12.0 2.3 4.8 7.2 0.0 2.3 2 0 0 2 2 2 0 Zinc ribbon domain zf-C4_Topoisom PF01396.14 gi|57640227|ref|YP_182705.1| - 0.18 11.3 2.1 1 8.9 0.2 2.2 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger TFIIS_C PF01096.13 gi|57640227|ref|YP_182705.1| - 0.59 9.8 4.4 1.5 8.4 0.4 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Zn_Tnp_IS1595 PF12760.2 gi|57640227|ref|YP_182705.1| - 2.8 7.8 4.9 13 5.7 2.6 2.2 1 1 1 2 2 2 0 Transposase zinc-ribbon domain MAF_flag10 PF01973.13 gi|57640228|ref|YP_182706.1| - 8e-34 116.5 0.0 1.1e-33 116.1 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF115 TPK_catalytic PF04263.11 gi|57640228|ref|YP_182706.1| - 0.014 15.0 0.7 0.94 9.0 0.3 2.8 2 1 1 3 3 3 0 Thiamin pyrophosphokinase, catalytic domain Ferric_reduct PF01794.14 gi|57640229|ref|YP_182707.1| - 0.18 11.9 5.4 0.98 9.5 3.8 2.2 1 1 0 1 1 1 0 Ferric reductase like transmembrane component DUF1514 PF07438.6 gi|57640229|ref|YP_182707.1| - 0.23 11.3 0.1 0.23 11.3 0.1 2.3 3 0 0 3 3 3 0 Protein of unknown function (DUF1514) HlyIII PF03006.15 gi|57640229|ref|YP_182707.1| - 0.43 9.9 11.5 1.1 8.6 8.0 1.6 1 1 0 1 1 1 0 Haemolysin-III related DUF4149 PF13664.1 gi|57640229|ref|YP_182707.1| - 0.66 10.0 7.5 0.86 9.6 3.9 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4149) CybS PF05328.7 gi|57640229|ref|YP_182707.1| - 1 8.9 6.5 0.38 10.3 1.4 2.0 1 1 1 2 2 2 0 CybS SNF PF00209.13 gi|57640230|ref|YP_182708.1| - 3.2e-05 22.6 9.4 3.2e-05 22.6 6.5 2.1 1 1 1 2 2 2 2 Sodium:neurotransmitter symporter family NadA PF02445.11 gi|57640231|ref|YP_182709.1| - 5e-116 386.6 2.6 5.6e-116 386.4 1.8 1.0 1 0 0 1 1 1 1 Quinolinate synthetase A protein Sua5_yciO_yrdC PF01300.13 gi|57640231|ref|YP_182709.1| - 0.0017 17.6 0.4 0.0045 16.2 0.1 1.8 2 0 0 2 2 2 1 Telomere recombination DUF837 PF05769.6 gi|57640231|ref|YP_182709.1| - 0.09 12.3 0.0 0.09 12.3 0.0 2.3 3 0 0 3 3 3 0 Protein of unknown function (DUF837) FAD_binding_2 PF00890.19 gi|57640232|ref|YP_182710.1| - 3.9e-66 223.6 0.6 4.6e-66 223.3 0.4 1.1 1 0 0 1 1 1 1 FAD binding domain Succ_DH_flav_C PF02910.15 gi|57640232|ref|YP_182710.1| - 3.4e-14 52.7 0.8 4.7e-07 29.7 0.2 2.5 1 1 1 2 2 2 2 Fumarate reductase flavoprotein C-term DAO PF01266.19 gi|57640232|ref|YP_182710.1| - 2.1e-10 40.0 1.2 4.5e-06 25.7 0.2 2.4 2 0 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|57640232|ref|YP_182710.1| - 3e-10 40.3 7.7 2.3e-08 34.1 5.3 2.9 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|57640232|ref|YP_182710.1| - 3.2e-07 29.5 3.2 1.3e-06 27.5 2.2 1.8 1 1 0 1 1 1 1 Glucose inhibited division protein A NAD_binding_8 PF13450.1 gi|57640232|ref|YP_182710.1| - 1.1e-05 25.3 1.0 3.2e-05 23.8 0.7 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.9 gi|57640232|ref|YP_182710.1| - 1.2e-05 23.9 2.0 0.0002 19.9 1.4 2.2 1 1 0 1 1 1 1 HI0933-like protein Pyr_redox PF00070.22 gi|57640232|ref|YP_182710.1| - 2.6e-05 24.5 1.3 8.6e-05 22.8 0.3 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|57640232|ref|YP_182710.1| - 0.00075 18.6 1.3 0.0013 17.8 0.9 1.4 1 0 0 1 1 1 1 FAD binding domain FAD_oxidored PF12831.2 gi|57640232|ref|YP_182710.1| - 0.01 14.9 1.1 0.019 14.0 0.8 1.4 1 0 0 1 1 1 0 FAD dependent oxidoreductase NYD-SP12_N PF15015.1 gi|57640232|ref|YP_182710.1| - 0.011 14.0 0.0 0.016 13.4 0.0 1.1 1 0 0 1 1 1 0 Spermatogenesis-associated, N-terminal Trp_halogenase PF04820.9 gi|57640232|ref|YP_182710.1| - 0.026 13.1 2.3 0.092 11.3 1.3 1.9 2 0 0 2 2 2 0 Tryptophan halogenase Thi4 PF01946.12 gi|57640232|ref|YP_182710.1| - 0.089 11.8 0.6 0.48 9.4 0.2 2.3 3 0 0 3 3 3 0 Thi4 family 3HCDH_N PF02737.13 gi|57640232|ref|YP_182710.1| - 0.093 12.3 0.2 0.15 11.6 0.2 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.16 gi|57640232|ref|YP_182710.1| - 0.14 11.7 0.3 0.26 10.8 0.2 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Lycopene_cycl PF05834.7 gi|57640232|ref|YP_182710.1| - 0.14 11.0 0.2 0.35 9.7 0.3 1.4 2 0 0 2 2 2 0 Lycopene cyclase protein NAD_binding_9 PF13454.1 gi|57640232|ref|YP_182710.1| - 0.41 10.4 1.7 10 5.8 1.1 2.3 2 0 0 2 2 2 0 FAD-NAD(P)-binding OrfB_IS605 PF01385.14 gi|57640233|ref|YP_182711.1| - 8.5e-69 231.4 0.9 1.2e-68 230.9 0.6 1.2 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|57640233|ref|YP_182711.1| - 9.9e-21 73.1 0.0 1.8e-20 72.3 0.0 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|57640233|ref|YP_182711.1| - 5.8e-07 28.7 0.0 1.3e-06 27.6 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain UPF0081 PF03652.10 gi|57640233|ref|YP_182711.1| - 0.0038 17.3 0.0 0.012 15.7 0.0 1.8 1 1 0 1 1 1 1 Uncharacterised protein family (UPF0081) Lipase_GDSL_2 PF13472.1 gi|57640233|ref|YP_182711.1| - 0.024 14.7 0.0 0.038 14.1 0.0 1.3 1 0 0 1 1 1 0 GDSL-like Lipase/Acylhydrolase family zf-ribbon_3 PF13248.1 gi|57640233|ref|YP_182711.1| - 0.13 11.5 0.5 0.25 10.5 0.3 1.5 1 0 0 1 1 1 0 zinc-ribbon domain DUF1180 PF06679.7 gi|57640236|ref|YP_182714.1| - 0.098 12.5 0.0 0.65 9.8 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1180) PTS_2-RNA PF01885.11 gi|57640237|ref|YP_182715.1| - 5.2e-50 169.3 0.0 6.2e-50 169.0 0.0 1.0 1 0 0 1 1 1 1 RNA 2'-phosphotransferase, Tpt1 / KptA family PARP PF00644.15 gi|57640237|ref|YP_182715.1| - 0.0021 17.5 0.0 0.0026 17.2 0.0 1.2 1 0 0 1 1 1 1 Poly(ADP-ribose) polymerase catalytic domain FRQ PF09421.5 gi|57640237|ref|YP_182715.1| - 0.01 13.6 0.0 0.013 13.3 0.0 1.1 1 0 0 1 1 1 0 Frequency clock protein DUF4433 PF14487.1 gi|57640237|ref|YP_182715.1| - 0.054 13.2 0.0 0.87 9.2 0.0 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4433) Exo_endo_phos PF03372.18 gi|57640238|ref|YP_182716.1| - 6.3e-16 59.0 0.0 8.7e-16 58.5 0.0 1.2 1 0 0 1 1 1 1 Endonuclease/Exonuclease/phosphatase family Pyr_redox_2 PF07992.9 gi|57640239|ref|YP_182717.1| - 3.4e-39 134.8 0.2 2.1e-38 132.2 0.2 3.1 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|57640239|ref|YP_182717.1| - 4.7e-26 91.0 1.9 3.6e-18 65.7 0.4 3.7 3 0 0 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|57640239|ref|YP_182717.1| - 1.9e-18 66.4 0.2 1.4e-17 63.6 0.0 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DAO PF01266.19 gi|57640239|ref|YP_182717.1| - 1.3e-12 47.3 2.3 0.0011 17.9 0.1 4.1 4 0 0 4 4 4 4 FAD dependent oxidoreductase Pyr_redox_3 PF13738.1 gi|57640239|ref|YP_182717.1| - 2.3e-07 31.0 3.4 0.00041 20.4 0.4 3.8 2 1 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|57640239|ref|YP_182717.1| - 1.7e-06 26.8 2.9 0.34 9.3 0.7 3.9 3 1 1 4 4 4 3 HI0933-like protein NAD_binding_8 PF13450.1 gi|57640239|ref|YP_182717.1| - 1.2e-05 25.2 0.0 0.13 12.2 0.0 2.6 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.19 gi|57640239|ref|YP_182717.1| - 3.6e-05 22.7 1.8 0.1 11.4 0.3 3.2 3 0 0 3 3 3 2 FAD binding domain 3HCDH_N PF02737.13 gi|57640239|ref|YP_182717.1| - 5e-05 23.0 0.8 0.0034 17.0 0.2 2.5 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.16 gi|57640239|ref|YP_182717.1| - 9.2e-05 22.0 0.1 0.0041 16.6 0.0 2.6 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain GIDA PF01134.17 gi|57640239|ref|YP_182717.1| - 9.3e-05 21.4 0.1 0.013 14.4 0.0 2.6 3 0 0 3 3 3 1 Glucose inhibited division protein A NAD_binding_7 PF13241.1 gi|57640239|ref|YP_182717.1| - 0.0001 22.4 0.7 0.032 14.4 0.1 2.7 2 1 0 2 2 2 1 Putative NAD(P)-binding Lycopene_cycl PF05834.7 gi|57640239|ref|YP_182717.1| - 0.00014 20.9 2.1 2.1 7.1 0.0 3.2 2 1 1 3 3 3 3 Lycopene cyclase protein DUF1188 PF06690.6 gi|57640239|ref|YP_182717.1| - 0.0041 16.2 0.3 0.046 12.8 0.1 2.3 2 1 0 2 2 2 1 Protein of unknown function (DUF1188) K_oxygenase PF13434.1 gi|57640239|ref|YP_182717.1| - 0.0053 15.7 0.0 0.15 10.9 0.0 2.3 2 0 0 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) 2-Hacid_dh_C PF02826.14 gi|57640239|ref|YP_182717.1| - 0.0079 15.3 0.2 0.03 13.4 0.0 1.9 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.9 gi|57640239|ref|YP_182717.1| - 0.0084 15.5 0.1 0.14 11.4 0.0 2.4 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain TrkA_N PF02254.13 gi|57640239|ref|YP_182717.1| - 0.026 14.5 0.2 7.3 6.6 0.0 2.8 3 0 0 3 3 3 0 TrkA-N domain FAD_binding_3 PF01494.14 gi|57640239|ref|YP_182717.1| - 0.026 13.5 0.2 0.46 9.4 0.1 2.2 2 0 0 2 2 2 0 FAD binding domain ThiF PF00899.16 gi|57640239|ref|YP_182717.1| - 0.032 14.0 0.1 1.3 8.8 0.0 2.5 2 0 0 2 2 2 0 ThiF family Trp_halogenase PF04820.9 gi|57640239|ref|YP_182717.1| - 0.047 12.3 0.9 0.08 11.5 0.0 1.8 2 0 0 2 2 2 0 Tryptophan halogenase GFO_IDH_MocA PF01408.17 gi|57640239|ref|YP_182717.1| - 0.071 13.6 0.1 17 5.9 0.0 2.6 2 1 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold AA_kinase PF00696.23 gi|57640240|ref|YP_182718.1| - 3e-37 128.4 1.7 3.7e-37 128.1 1.2 1.1 1 0 0 1 1 1 1 Amino acid kinase family Ribosomal_L11 PF00298.14 gi|57640240|ref|YP_182718.1| - 0.067 13.3 0.0 0.14 12.2 0.0 1.6 1 0 0 1 1 1 0 Ribosomal protein L11, RNA binding domain DEAD PF00270.24 gi|57640241|ref|YP_182719.1| - 4.3e-48 163.0 0.0 1.8e-47 160.9 0.0 1.8 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|57640241|ref|YP_182719.1| - 1.3e-28 98.6 0.1 3e-28 97.5 0.0 1.6 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|57640241|ref|YP_182719.1| - 0.002 17.9 0.0 0.11 12.2 0.0 2.3 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit DUF1253 PF06862.7 gi|57640241|ref|YP_182719.1| - 0.059 11.7 0.1 4.8 5.4 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1253) TGT PF01702.13 gi|57640241|ref|YP_182719.1| - 0.095 11.9 0.0 0.59 9.3 0.0 2.0 1 1 1 2 2 2 0 Queuine tRNA-ribosyltransferase Ribosomal_S10 PF00338.17 gi|57640242|ref|YP_182720.1| - 3e-31 107.1 0.2 3.4e-31 106.9 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e GTP_EFTU PF00009.22 gi|57640243|ref|YP_182721.1| - 3.7e-62 209.1 0.1 5.2e-62 208.6 0.1 1.1 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.12 gi|57640243|ref|YP_182721.1| - 6.1e-31 106.5 0.5 2.1e-30 104.7 0.3 2.0 1 0 0 1 1 1 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.20 gi|57640243|ref|YP_182721.1| - 8.5e-22 77.0 1.5 1.1e-20 73.5 0.4 2.7 2 0 0 2 2 2 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|57640243|ref|YP_182721.1| - 4e-07 29.9 0.2 1.3e-06 28.3 0.0 1.9 2 1 0 2 2 2 1 50S ribosome-binding GTPase GTP_EFTU_D4 PF14578.1 gi|57640243|ref|YP_182721.1| - 0.00011 21.8 0.8 0.00042 19.8 0.6 2.0 1 1 0 1 1 1 1 Elongation factor Tu domain 4 Miro PF08477.8 gi|57640243|ref|YP_182721.1| - 0.0023 18.4 0.0 0.0092 16.4 0.0 2.1 1 1 0 1 1 1 1 Miro-like protein Gtr1_RagA PF04670.7 gi|57640243|ref|YP_182721.1| - 0.0067 15.6 0.1 0.15 11.1 0.0 2.2 1 1 0 1 1 1 1 Gtr1/RagA G protein conserved region FeoB_N PF02421.13 gi|57640243|ref|YP_182721.1| - 0.0067 15.7 0.8 0.051 12.8 0.2 2.5 2 1 0 2 2 2 1 Ferrous iron transport protein B Dynamin_N PF00350.18 gi|57640243|ref|YP_182721.1| - 0.015 15.1 0.4 4.2 7.1 0.0 2.9 2 1 1 3 3 3 0 Dynamin family SRPRB PF09439.5 gi|57640243|ref|YP_182721.1| - 0.091 11.9 0.3 1.6 7.9 0.2 2.6 1 1 0 1 1 1 0 Signal recognition particle receptor beta subunit AIG1 PF04548.11 gi|57640243|ref|YP_182721.1| - 0.13 11.3 1.0 7.7 5.5 0.0 2.8 1 1 1 2 2 2 0 AIG1 family GTP_EFTU PF00009.22 gi|57640244|ref|YP_182722.1| - 3.5e-61 205.9 0.1 5.5e-61 205.2 0.0 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_IV PF03764.13 gi|57640244|ref|YP_182722.1| - 6.2e-32 109.6 0.1 2.5e-31 107.7 0.0 2.1 2 0 0 2 2 2 1 Elongation factor G, domain IV EFG_II PF14492.1 gi|57640244|ref|YP_182722.1| - 2.9e-27 94.2 0.4 5.8e-27 93.3 0.2 1.5 1 0 0 1 1 1 1 Elongation Factor G, domain II EFG_C PF00679.19 gi|57640244|ref|YP_182722.1| - 7.5e-24 83.4 0.1 4.2e-23 81.0 0.0 2.4 2 0 0 2 2 2 1 Elongation factor G C-terminus GTP_EFTU_D2 PF03144.20 gi|57640244|ref|YP_182722.1| - 1.6e-15 56.9 0.5 3.6e-15 55.8 0.4 1.7 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|57640244|ref|YP_182722.1| - 0.00032 20.6 0.0 0.00088 19.2 0.0 1.8 1 0 0 1 1 1 1 50S ribosome-binding GTPase DUF1796 PF08795.5 gi|57640244|ref|YP_182722.1| - 0.11 12.1 0.0 9.7 5.7 0.0 2.4 2 0 0 2 2 2 0 Putative papain-like cysteine peptidase (DUF1796) DUF1474 PF07342.6 gi|57640246|ref|YP_182724.1| - 0.0021 18.2 0.2 0.058 13.6 0.2 2.2 1 1 0 1 1 1 1 Protein of unknown function (DUF1474) Hom_end_hint PF05203.11 gi|57640246|ref|YP_182724.1| - 0.014 15.1 0.3 0.014 15.1 0.2 1.1 1 0 0 1 1 1 0 Hom_end-associated Hint DUF4315 PF14193.1 gi|57640246|ref|YP_182724.1| - 0.25 11.2 3.8 1.2 9.1 2.6 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF4315) HD PF01966.17 gi|57640247|ref|YP_182725.1| - 2.2e-08 34.1 2.3 2.2e-08 34.1 1.6 2.5 2 2 0 2 2 2 1 HD domain HDOD PF08668.7 gi|57640247|ref|YP_182725.1| - 0.0067 15.7 0.0 0.012 14.8 0.0 1.4 1 0 0 1 1 1 1 HDOD domain Peptidase_M20 PF01546.23 gi|57640248|ref|YP_182726.1| - 2.6e-25 89.0 0.0 3.5e-25 88.6 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M42 PF05343.9 gi|57640248|ref|YP_182726.1| - 5e-10 38.6 0.0 9.6e-06 24.5 0.0 2.1 2 0 0 2 2 2 2 M42 glutamyl aminopeptidase Peptidase_M28 PF04389.12 gi|57640248|ref|YP_182726.1| - 7.2e-09 35.6 0.0 3.4e-06 26.9 0.0 2.1 2 0 0 2 2 2 2 Peptidase family M28 M20_dimer PF07687.9 gi|57640248|ref|YP_182726.1| - 1.4e-08 34.4 0.0 3.9e-08 33.0 0.0 1.8 1 1 0 1 1 1 1 Peptidase dimerisation domain DUF2173 PF09941.4 gi|57640248|ref|YP_182726.1| - 0.068 13.1 0.0 0.13 12.2 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2173) Lactamase_B PF00753.22 gi|57640249|ref|YP_182727.1| - 9.1e-28 97.2 5.0 1.1e-27 96.9 3.4 1.1 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|57640249|ref|YP_182727.1| - 9.8e-06 25.2 0.5 1.2e-05 24.9 0.3 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain DUF504 PF04457.7 gi|57640250|ref|YP_182728.1| - 6.3e-18 64.6 1.6 1.1e-17 63.9 1.1 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF504) Orn_DAP_Arg_deC PF00278.17 gi|57640250|ref|YP_182728.1| - 0.14 11.8 0.1 0.24 11.1 0.0 1.4 1 1 0 1 1 1 0 Pyridoxal-dependent decarboxylase, C-terminal sheet domain DUF835 PF05763.7 gi|57640251|ref|YP_182729.1| - 2.2e-37 127.6 0.0 4.2e-37 126.7 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF835) Rubrerythrin PF02915.12 gi|57640251|ref|YP_182729.1| - 4.1e-20 72.5 7.2 7.3e-20 71.6 5.0 1.4 1 0 0 1 1 1 1 Rubrerythrin Ferritin_2 PF13668.1 gi|57640251|ref|YP_182729.1| - 2.6e-05 24.2 0.1 4.4e-05 23.4 0.1 1.4 1 0 0 1 1 1 1 Ferritin-like domain DUF2383 PF09537.5 gi|57640251|ref|YP_182729.1| - 0.00094 19.4 1.4 0.026 14.7 0.1 2.5 2 0 0 2 2 2 1 Domain of unknown function (DUF2383) DUF3231 PF11553.3 gi|57640251|ref|YP_182729.1| - 0.075 12.5 0.3 0.98 8.8 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3231) MutS_II PF05188.12 gi|57640251|ref|YP_182729.1| - 0.084 12.9 0.2 0.17 11.9 0.1 1.4 1 0 0 1 1 1 0 MutS domain II DUF3221 PF11518.3 gi|57640251|ref|YP_182729.1| - 0.18 11.5 1.5 0.99 9.1 0.1 2.9 4 1 0 4 4 4 0 Protein of unknown function (DUF3221) TatD_DNase PF01026.16 gi|57640252|ref|YP_182730.1| - 7.3e-59 199.0 0.1 8.4e-59 198.8 0.1 1.0 1 0 0 1 1 1 1 TatD related DNase DUF4460 PF14687.1 gi|57640252|ref|YP_182730.1| - 0.053 13.2 0.0 0.21 11.3 0.0 1.8 1 1 1 2 2 2 0 Domain of unknown function (DUF4460) DUF3216 PF11505.3 gi|57640253|ref|YP_182731.1| - 3e-21 75.0 1.7 3.3e-21 74.8 1.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3216) Pterin_bind PF00809.17 gi|57640254|ref|YP_182732.1| - 9.7e-18 64.2 0.0 2e-17 63.3 0.0 1.6 1 0 0 1 1 1 1 Pterin binding enzyme DUF4346 PF14251.1 gi|57640254|ref|YP_182732.1| - 0.00013 21.6 0.1 0.00049 19.8 0.0 2.0 3 0 0 3 3 3 1 Domain of unknown function (DUF4346) GcpE PF04551.9 gi|57640254|ref|YP_182732.1| - 0.024 13.4 0.0 0.067 11.9 0.0 1.7 1 1 0 1 1 1 0 GcpE protein DUF72 PF01904.13 gi|57640255|ref|YP_182733.1| - 6.3e-47 160.2 0.1 6.9e-47 160.1 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF72 ABC2_membrane_4 PF12730.2 gi|57640259|ref|YP_182737.1| - 7.4e-09 35.1 30.8 1.4e-08 34.1 21.3 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|57640259|ref|YP_182737.1| - 2.8e-05 23.1 23.5 7.1e-05 21.7 16.3 1.6 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|57640259|ref|YP_182737.1| - 0.00011 21.5 14.5 0.00011 21.5 10.0 2.0 2 0 0 2 2 2 1 ABC-2 family transporter protein GPDPase_memb PF10110.4 gi|57640259|ref|YP_182737.1| - 2.1 7.7 11.7 0.13 11.6 4.5 1.7 2 0 0 2 2 2 0 Membrane domain of glycerophosphoryl diester phosphodiesterase ABC_tran PF00005.22 gi|57640261|ref|YP_182739.1| - 5.4e-19 68.8 0.0 7.4e-19 68.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|57640261|ref|YP_182739.1| - 1.5e-10 41.5 0.9 0.00015 21.8 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_23 PF13476.1 gi|57640261|ref|YP_182739.1| - 4.1e-06 27.2 0.3 8.6e-06 26.2 0.2 1.4 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|57640261|ref|YP_182739.1| - 6.1e-06 25.6 0.0 0.0047 16.1 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|57640261|ref|YP_182739.1| - 0.00056 19.3 0.2 0.0011 18.4 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_ATPase PF09818.4 gi|57640261|ref|YP_182739.1| - 0.017 13.7 0.3 0.025 13.2 0.2 1.2 1 0 0 1 1 1 0 Predicted ATPase of the ABC class AAA_10 PF12846.2 gi|57640261|ref|YP_182739.1| - 0.019 14.4 0.0 0.031 13.7 0.0 1.3 1 0 0 1 1 1 0 AAA-like domain SbcCD_C PF13558.1 gi|57640261|ref|YP_182739.1| - 0.037 13.9 0.1 0.069 13.0 0.1 1.6 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_25 PF13481.1 gi|57640261|ref|YP_182739.1| - 0.093 12.1 0.0 0.24 10.7 0.0 1.8 2 0 0 2 2 2 0 AAA domain MutS_V PF00488.16 gi|57640261|ref|YP_182739.1| - 0.15 11.4 0.0 0.23 10.8 0.0 1.2 1 0 0 1 1 1 0 MutS domain V PHP PF02811.14 gi|57640262|ref|YP_182740.1| - 2.3e-13 50.2 0.0 3.8e-13 49.6 0.0 1.4 1 1 0 1 1 1 1 PHP domain PHP_C PF13263.1 gi|57640262|ref|YP_182740.1| - 0.00013 21.3 0.0 0.00049 19.5 0.0 1.9 2 0 0 2 2 2 1 PHP-associated B12-binding PF02310.14 gi|57640263|ref|YP_182741.1| - 8.3e-23 80.5 0.2 9.9e-23 80.2 0.1 1.1 1 0 0 1 1 1 1 B12 binding domain MoCF_biosynth PF00994.19 gi|57640263|ref|YP_182741.1| - 0.026 13.9 0.2 0.12 11.7 0.0 2.0 2 1 0 2 2 2 0 Probable molybdopterin binding domain Radical_SAM PF04055.16 gi|57640263|ref|YP_182741.1| - 0.029 14.5 0.1 0.085 13.0 0.1 1.7 1 1 1 2 2 2 0 Radical SAM superfamily Nitro_FeMo-Co PF02579.12 gi|57640263|ref|YP_182741.1| - 0.042 13.9 0.2 19 5.3 0.0 3.1 1 1 3 4 4 4 0 Dinitrogenase iron-molybdenum cofactor TPP_enzyme_N PF02776.13 gi|57640263|ref|YP_182741.1| - 0.14 11.6 0.0 4 6.8 0.0 2.1 2 0 0 2 2 2 0 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ArgK PF03308.11 gi|57640264|ref|YP_182742.1| - 2.8e-121 403.3 2.5 3.5e-121 403.0 1.7 1.1 1 0 0 1 1 1 1 ArgK protein cobW PF02492.14 gi|57640264|ref|YP_182742.1| - 5.1e-09 35.8 4.8 6.3e-09 35.5 1.6 2.3 2 1 0 2 2 1 1 CobW/HypB/UreG, nucleotide-binding domain NTPase_1 PF03266.10 gi|57640264|ref|YP_182742.1| - 2.3e-05 24.1 0.4 6.5e-05 22.7 0.1 1.9 2 0 0 2 2 1 1 NTPase SRP54 PF00448.17 gi|57640264|ref|YP_182742.1| - 2.5e-05 23.8 0.1 9.5e-05 21.9 0.1 1.9 1 1 0 1 1 1 1 SRP54-type protein, GTPase domain GTP_EFTU PF00009.22 gi|57640264|ref|YP_182742.1| - 7.1e-05 22.3 0.0 0.00065 19.1 0.0 2.2 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain MobB PF03205.9 gi|57640264|ref|YP_182742.1| - 7.7e-05 22.4 0.5 0.00054 19.6 0.3 2.5 1 1 1 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_10 PF12846.2 gi|57640264|ref|YP_182742.1| - 8.6e-05 22.1 0.1 0.00016 21.2 0.1 1.8 1 1 0 1 1 1 1 AAA-like domain ATP_bind_1 PF03029.12 gi|57640264|ref|YP_182742.1| - 9.4e-05 22.0 0.0 0.00075 19.1 0.0 2.1 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein ABC_tran PF00005.22 gi|57640264|ref|YP_182742.1| - 0.00011 22.4 0.1 0.00024 21.3 0.1 1.5 1 0 0 1 1 1 1 ABC transporter AAA_30 PF13604.1 gi|57640264|ref|YP_182742.1| - 0.00018 21.1 0.0 0.00052 19.6 0.0 1.8 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|57640264|ref|YP_182742.1| - 0.00018 21.8 2.2 0.0014 18.8 0.0 3.0 2 1 0 2 2 2 1 AAA domain CbiA PF01656.18 gi|57640264|ref|YP_182742.1| - 0.00028 20.3 1.4 0.00044 19.7 0.2 1.8 2 0 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_19 PF13245.1 gi|57640264|ref|YP_182742.1| - 0.00042 20.0 1.3 0.00082 19.0 0.2 2.0 2 0 0 2 2 1 1 Part of AAA domain AAA_22 PF13401.1 gi|57640264|ref|YP_182742.1| - 0.00058 20.0 0.0 0.0019 18.3 0.0 2.0 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|57640264|ref|YP_182742.1| - 0.00065 19.7 0.1 0.0015 18.5 0.0 1.6 2 0 0 2 2 1 1 AAA ATPase domain AAA_29 PF13555.1 gi|57640264|ref|YP_182742.1| - 0.00075 18.9 0.0 0.0015 18.0 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_17 PF13207.1 gi|57640264|ref|YP_182742.1| - 0.001 19.8 0.2 0.001 19.8 0.1 2.5 2 1 0 2 2 2 1 AAA domain MMR_HSR1 PF01926.18 gi|57640264|ref|YP_182742.1| - 0.0011 18.8 0.2 0.0032 17.3 0.1 2.0 1 1 0 1 1 1 1 50S ribosome-binding GTPase DAP3 PF10236.4 gi|57640264|ref|YP_182742.1| - 0.003 16.5 0.0 0.011 14.6 0.0 1.8 2 0 0 2 2 2 1 Mitochondrial ribosomal death-associated protein 3 KAP_NTPase PF07693.9 gi|57640264|ref|YP_182742.1| - 0.0068 15.4 0.0 0.0068 15.4 0.0 1.3 1 1 0 1 1 1 1 KAP family P-loop domain Zeta_toxin PF06414.7 gi|57640264|ref|YP_182742.1| - 0.01 14.9 0.0 0.023 13.8 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin AAA_23 PF13476.1 gi|57640264|ref|YP_182742.1| - 0.014 15.7 1.1 0.12 12.6 0.1 2.2 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.1 gi|57640264|ref|YP_182742.1| - 0.019 14.8 0.1 0.065 13.1 0.0 2.0 2 0 0 2 2 2 0 AAA domain Arch_ATPase PF01637.13 gi|57640264|ref|YP_182742.1| - 0.021 14.5 1.1 0.32 10.6 0.0 2.2 2 0 0 2 2 2 0 Archaeal ATPase AAA_25 PF13481.1 gi|57640264|ref|YP_182742.1| - 0.023 14.1 1.0 0.21 10.9 0.2 2.7 2 1 1 3 3 3 0 AAA domain TrwB_AAD_bind PF10412.4 gi|57640264|ref|YP_182742.1| - 0.023 13.3 0.1 0.04 12.5 0.0 1.3 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_14 PF13173.1 gi|57640264|ref|YP_182742.1| - 0.024 14.5 0.1 0.088 12.7 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.1 gi|57640264|ref|YP_182742.1| - 0.025 14.5 0.5 0.08 12.8 0.1 2.0 2 0 0 2 2 2 0 AAA domain Miro PF08477.8 gi|57640264|ref|YP_182742.1| - 0.032 14.7 0.1 0.21 12.0 0.0 2.5 2 1 0 2 2 2 0 Miro-like protein DUF258 PF03193.11 gi|57640264|ref|YP_182742.1| - 0.045 12.9 0.0 0.097 11.8 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function, DUF258 NACHT PF05729.7 gi|57640264|ref|YP_182742.1| - 0.047 13.3 0.0 0.094 12.3 0.0 1.5 1 0 0 1 1 1 0 NACHT domain NB-ARC PF00931.17 gi|57640264|ref|YP_182742.1| - 0.079 11.7 0.0 0.16 10.8 0.0 1.5 1 0 0 1 1 1 0 NB-ARC domain RNA_helicase PF00910.17 gi|57640264|ref|YP_182742.1| - 0.096 12.8 0.0 0.41 10.8 0.0 2.1 2 1 1 3 3 1 0 RNA helicase KTI12 PF08433.5 gi|57640264|ref|YP_182742.1| - 0.12 11.5 0.1 0.37 9.9 0.0 1.8 2 0 0 2 2 2 0 Chromatin associated protein KTI12 Glyoxalase_4 PF13669.1 gi|57640265|ref|YP_182743.1| - 8.5e-26 90.1 0.0 9.9e-26 89.9 0.0 1.0 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase PF00903.20 gi|57640265|ref|YP_182743.1| - 9.6e-14 51.4 0.0 1e-13 51.3 0.0 1.0 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.1 gi|57640265|ref|YP_182743.1| - 1.7e-11 44.3 0.0 1.9e-11 44.1 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_2 PF12681.2 gi|57640265|ref|YP_182743.1| - 2.7e-08 34.3 0.0 4.1e-08 33.7 0.0 1.3 1 1 0 1 1 1 1 Glyoxalase-like domain ArgK PF03308.11 gi|57640265|ref|YP_182743.1| - 0.12 11.1 0.4 1 8.0 0.0 1.9 1 1 1 2 2 2 0 ArgK protein Acetyltransf_1 PF00583.19 gi|57640266|ref|YP_182744.1| - 3e-11 43.1 0.1 5.4e-11 42.3 0.1 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|57640266|ref|YP_182744.1| - 8.2e-11 42.0 0.0 1.5e-09 37.9 0.0 2.2 1 1 1 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|57640266|ref|YP_182744.1| - 1.4e-10 41.1 0.0 2.2e-10 40.5 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|57640266|ref|YP_182744.1| - 1.1e-07 31.7 0.0 2e-07 30.8 0.0 1.4 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|57640266|ref|YP_182744.1| - 4.5e-05 23.1 0.0 9.1e-05 22.1 0.0 1.5 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_8 PF13523.1 gi|57640266|ref|YP_182744.1| - 0.014 15.3 0.0 0.022 14.6 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|57640266|ref|YP_182744.1| - 0.019 14.9 0.0 0.03 14.2 0.0 1.4 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|57640266|ref|YP_182744.1| - 0.13 12.1 0.0 0.23 11.3 0.0 1.4 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase AHS2 PF02626.10 gi|57640267|ref|YP_182745.1| - 4.1e-89 298.4 0.0 4.7e-89 298.2 0.0 1.0 1 0 0 1 1 1 1 Allophanate hydrolase subunit 2 AHS1 PF02682.11 gi|57640268|ref|YP_182746.1| - 6.8e-79 264.0 0.0 7.9e-79 263.8 0.0 1.0 1 0 0 1 1 1 1 Allophanate hydrolase subunit 1 PIN PF01850.16 gi|57640269|ref|YP_182747.1| - 1.4e-17 64.1 0.5 1.5e-17 64.0 0.3 1.0 1 0 0 1 1 1 1 PIN domain DUF4411 PF14367.1 gi|57640269|ref|YP_182747.1| - 0.032 13.9 0.0 0.28 10.8 0.0 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF4411) PIN_3 PF13470.1 gi|57640269|ref|YP_182747.1| - 0.037 14.6 0.0 0.05 14.2 0.0 1.3 1 1 0 1 1 1 0 PIN domain DUF104 PF01954.11 gi|57640270|ref|YP_182748.1| - 4.6e-17 61.7 1.5 5.4e-17 61.5 1.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF104 LamB_YcsF PF03746.11 gi|57640271|ref|YP_182749.1| - 1.8e-112 374.3 0.0 2e-112 374.1 0.0 1.0 1 0 0 1 1 1 1 LamB/YcsF family UPF0278 PF08745.6 gi|57640272|ref|YP_182750.1| - 0.00012 21.4 0.1 0.00016 20.9 0.1 1.2 1 0 0 1 1 1 1 UPF0278 family Zn-ribbon_8 PF09723.5 gi|57640272|ref|YP_182750.1| - 0.0013 18.6 2.5 0.0041 17.0 1.7 1.7 1 1 0 1 1 1 1 Zinc ribbon domain DNA_RNApol_7kD PF03604.8 gi|57640272|ref|YP_182750.1| - 0.0056 16.1 0.3 0.3 10.5 0.7 2.4 1 1 1 2 2 2 2 DNA directed RNA polymerase, 7 kDa subunit Prok-RING_1 PF14446.1 gi|57640272|ref|YP_182750.1| - 0.0089 15.7 0.4 0.014 15.0 0.3 1.2 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 NOB1_Zn_bind PF08772.6 gi|57640272|ref|YP_182750.1| - 0.014 15.2 0.1 0.029 14.1 0.1 1.5 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like HypA PF01155.14 gi|57640272|ref|YP_182750.1| - 0.02 14.5 0.4 0.086 12.5 0.3 1.9 1 1 0 1 1 1 0 Hydrogenase expression/synthesis hypA family DZR PF12773.2 gi|57640272|ref|YP_182750.1| - 0.088 12.6 0.2 0.16 11.8 0.1 1.3 1 0 0 1 1 1 0 Double zinc ribbon zf-IS66 PF13005.2 gi|57640272|ref|YP_182750.1| - 0.1 12.5 2.9 0.6 10.1 0.1 2.6 1 1 1 2 2 2 0 zinc-finger binding domain of transposase IS66 A2L_zn_ribbon PF08792.5 gi|57640272|ref|YP_182750.1| - 0.16 11.4 3.3 4.4 6.8 0.1 2.5 2 0 0 2 2 2 0 A2L zinc ribbon domain FYDLN_acid PF09538.5 gi|57640272|ref|YP_182750.1| - 0.25 11.9 1.4 0.34 11.5 0.3 1.6 2 0 0 2 2 2 0 Protein of unknown function (FYDLN_acid) Rubredoxin PF00301.15 gi|57640272|ref|YP_182750.1| - 0.63 9.9 3.8 1.6 8.7 2.6 1.6 1 1 0 1 1 1 0 Rubredoxin Zn_ribbon_recom PF13408.1 gi|57640272|ref|YP_182750.1| - 0.76 10.0 3.5 0.48 10.7 0.5 1.9 2 0 0 2 2 2 0 Recombinase zinc beta ribbon domain TF_Zn_Ribbon PF08271.7 gi|57640272|ref|YP_182750.1| - 1.2 8.5 6.2 9.7 5.5 0.7 2.5 1 1 1 2 2 2 0 TFIIB zinc-binding zf-HYPF PF07503.7 gi|57640272|ref|YP_182750.1| - 6.7 6.2 6.0 9.2 5.7 0.4 2.8 3 0 0 3 3 3 0 HypF finger AAA_18 PF13238.1 gi|57640273|ref|YP_182751.1| - 1.8e-22 80.0 1.8 2.4e-22 79.5 0.5 1.7 1 1 1 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|57640273|ref|YP_182751.1| - 4.2e-19 69.5 0.5 6e-19 69.0 0.4 1.4 1 1 0 1 1 1 1 AAA domain SKI PF01202.17 gi|57640273|ref|YP_182751.1| - 6.7e-14 52.0 0.1 4.6e-06 26.5 0.0 2.1 2 0 0 2 2 2 2 Shikimate kinase AAA_33 PF13671.1 gi|57640273|ref|YP_182751.1| - 9.9e-07 28.7 0.1 9.5e-05 22.3 0.1 2.6 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|57640273|ref|YP_182751.1| - 3.9e-06 27.0 0.0 1.5e-05 25.2 0.0 1.9 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.1 gi|57640273|ref|YP_182751.1| - 4.4e-06 26.7 0.4 2.5e-05 24.3 0.1 2.0 1 1 1 2 2 2 1 AAA domain Zeta_toxin PF06414.7 gi|57640273|ref|YP_182751.1| - 1.1e-05 24.6 0.0 0.0014 17.7 0.0 2.6 1 1 0 1 1 1 1 Zeta toxin Cytidylate_kin2 PF13189.1 gi|57640273|ref|YP_182751.1| - 2.4e-05 24.3 0.8 0.00016 21.6 0.0 2.1 1 1 0 2 2 2 1 Cytidylate kinase-like family AAA_22 PF13401.1 gi|57640273|ref|YP_182751.1| - 0.00019 21.5 0.4 0.004 17.2 0.2 2.2 1 1 1 2 2 2 1 AAA domain Thymidylate_kin PF02223.12 gi|57640273|ref|YP_182751.1| - 0.00022 20.6 0.5 0.25 10.6 0.0 2.1 2 0 0 2 2 2 2 Thymidylate kinase NTPase_1 PF03266.10 gi|57640273|ref|YP_182751.1| - 0.00039 20.1 0.8 0.0016 18.1 0.0 2.0 2 0 0 2 2 2 1 NTPase MobB PF03205.9 gi|57640273|ref|YP_182751.1| - 0.00053 19.7 0.3 0.047 13.3 0.0 2.2 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_5 PF07728.9 gi|57640273|ref|YP_182751.1| - 0.00066 19.4 1.8 0.033 13.9 0.1 2.3 1 1 0 2 2 2 1 AAA domain (dynein-related subfamily) UPF0180 PF03698.8 gi|57640273|ref|YP_182751.1| - 0.0012 18.6 2.1 0.0076 16.0 0.4 2.7 2 1 0 2 2 2 1 Uncharacterised protein family (UPF0180) AAA_14 PF13173.1 gi|57640273|ref|YP_182751.1| - 0.0016 18.3 0.1 0.0032 17.3 0.0 1.7 2 1 0 2 2 1 1 AAA domain CoaE PF01121.15 gi|57640273|ref|YP_182751.1| - 0.0057 16.0 0.1 0.013 14.9 0.0 1.6 1 1 0 1 1 1 1 Dephospho-CoA kinase RuvB_N PF05496.7 gi|57640273|ref|YP_182751.1| - 0.008 15.2 0.0 0.015 14.3 0.0 1.5 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_16 PF13191.1 gi|57640273|ref|YP_182751.1| - 0.012 15.6 0.7 0.033 14.1 0.5 1.9 1 1 0 1 1 1 0 AAA ATPase domain KTI12 PF08433.5 gi|57640273|ref|YP_182751.1| - 0.012 14.8 0.0 0.022 13.9 0.0 1.5 2 0 0 2 2 2 0 Chromatin associated protein KTI12 AAA_19 PF13245.1 gi|57640273|ref|YP_182751.1| - 0.014 15.1 0.2 0.06 13.0 0.1 2.1 2 0 0 2 2 2 0 Part of AAA domain cobW PF02492.14 gi|57640273|ref|YP_182751.1| - 0.015 14.7 0.3 0.025 14.0 0.2 1.5 1 1 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain Cytidylate_kin PF02224.13 gi|57640273|ref|YP_182751.1| - 0.017 14.5 0.3 0.061 12.7 0.2 1.9 1 1 0 1 1 1 0 Cytidylate kinase CPT PF07931.7 gi|57640273|ref|YP_182751.1| - 0.02 14.5 0.1 4.6 6.8 0.0 2.4 1 1 1 2 2 2 0 Chloramphenicol phosphotransferase-like protein PRK PF00485.13 gi|57640273|ref|YP_182751.1| - 0.024 14.1 0.0 0.048 13.2 0.0 1.6 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family ADK PF00406.17 gi|57640273|ref|YP_182751.1| - 0.025 14.4 0.3 3.5 7.4 0.0 2.2 2 0 0 2 2 2 0 Adenylate kinase SRP54 PF00448.17 gi|57640273|ref|YP_182751.1| - 0.034 13.6 0.9 2 7.8 0.1 2.1 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain RNA_helicase PF00910.17 gi|57640273|ref|YP_182751.1| - 0.051 13.7 0.0 0.094 12.8 0.0 1.5 1 0 0 1 1 1 0 RNA helicase AAA_3 PF07726.6 gi|57640273|ref|YP_182751.1| - 0.06 12.9 0.1 0.15 11.6 0.0 1.7 2 0 0 2 2 1 0 ATPase family associated with various cellular activities (AAA) dNK PF01712.14 gi|57640273|ref|YP_182751.1| - 0.067 13.0 0.0 0.088 12.7 0.0 1.3 1 0 0 1 1 1 0 Deoxynucleoside kinase NACHT PF05729.7 gi|57640273|ref|YP_182751.1| - 0.082 12.5 0.0 0.3 10.7 0.0 1.9 2 0 0 2 2 2 0 NACHT domain UPF0079 PF02367.12 gi|57640273|ref|YP_182751.1| - 0.082 12.5 0.4 0.49 10.0 0.0 2.3 2 1 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 ArgK PF03308.11 gi|57640273|ref|YP_182751.1| - 0.084 11.6 0.9 0.12 11.1 0.1 1.7 2 0 0 2 2 2 0 ArgK protein ABC_tran PF00005.22 gi|57640273|ref|YP_182751.1| - 0.1 12.9 0.4 0.44 10.8 0.3 1.9 1 1 1 2 2 2 0 ABC transporter APS_kinase PF01583.15 gi|57640273|ref|YP_182751.1| - 0.11 12.1 0.3 0.25 10.9 0.2 1.9 1 1 0 1 1 1 0 Adenylylsulphate kinase AAA_31 PF13614.1 gi|57640273|ref|YP_182751.1| - 0.12 12.3 0.0 0.44 10.4 0.0 1.9 2 0 0 2 2 2 0 AAA domain ArsA_ATPase PF02374.10 gi|57640273|ref|YP_182751.1| - 0.16 11.0 0.7 0.23 10.4 0.1 1.6 2 0 0 2 2 2 0 Anion-transporting ATPase AAA_26 PF13500.1 gi|57640273|ref|YP_182751.1| - 0.17 11.4 2.0 0.75 9.3 1.4 2.0 1 1 0 1 1 1 0 AAA domain KaiC PF06745.8 gi|57640273|ref|YP_182751.1| - 0.32 10.0 2.0 1.8 7.6 0.1 2.2 2 1 0 2 2 2 0 KaiC AAA_24 PF13479.1 gi|57640273|ref|YP_182751.1| - 0.61 9.6 2.3 1.1 8.7 0.5 2.0 2 1 0 2 2 2 0 AAA domain CbiA PF01656.18 gi|57640273|ref|YP_182751.1| - 1.2 8.4 3.6 3.2 7.1 2.4 1.9 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain cwf21 PF08312.7 gi|57640273|ref|YP_182751.1| - 9.9 6.1 8.8 1.9 8.4 0.2 2.8 2 1 0 2 2 2 0 cwf21 domain DUF904 PF06005.7 gi|57640274|ref|YP_182752.1| - 0.0065 16.7 1.3 0.0065 16.7 0.9 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF904) DUF972 PF06156.8 gi|57640274|ref|YP_182752.1| - 0.012 15.9 0.7 0.016 15.5 0.2 1.5 2 0 0 2 2 1 0 Protein of unknown function (DUF972) Ribosomal_L29 PF00831.18 gi|57640274|ref|YP_182752.1| - 0.014 15.0 0.5 0.039 13.6 0.3 1.8 1 0 0 1 1 1 0 Ribosomal L29 protein GAS PF13851.1 gi|57640274|ref|YP_182752.1| - 0.03 13.5 1.8 0.094 11.9 0.9 1.9 1 1 0 1 1 1 0 Growth-arrest specific micro-tubule binding IncA PF04156.9 gi|57640274|ref|YP_182752.1| - 0.031 13.8 0.7 0.043 13.4 0.4 1.5 1 1 0 1 1 1 0 IncA protein bZIP_2 PF07716.10 gi|57640274|ref|YP_182752.1| - 0.035 13.9 5.0 0.4 10.5 0.1 2.6 3 0 0 3 3 3 0 Basic region leucine zipper DUF3545 PF12065.3 gi|57640274|ref|YP_182752.1| - 0.045 13.5 0.1 0.13 11.9 0.1 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF3545) Trigger_C PF05698.9 gi|57640274|ref|YP_182752.1| - 0.058 13.2 0.5 0.14 11.9 0.1 1.8 1 1 0 1 1 1 0 Bacterial trigger factor protein (TF) C-terminus Uds1 PF15456.1 gi|57640274|ref|YP_182752.1| - 0.1 12.5 0.5 0.43 10.5 0.1 1.9 1 1 1 2 2 2 0 Up-regulated During Septation TMF_TATA_bd PF12325.3 gi|57640274|ref|YP_182752.1| - 0.12 12.1 1.5 1 9.0 0.1 2.1 1 1 1 2 2 2 0 TATA element modulatory factor 1 TATA binding ATG16 PF08614.6 gi|57640274|ref|YP_182752.1| - 0.13 12.0 0.8 0.17 11.7 0.6 1.2 1 0 0 1 1 1 0 Autophagy protein 16 (ATG16) NuA4 PF09340.5 gi|57640274|ref|YP_182752.1| - 0.14 11.8 0.1 0.23 11.0 0.1 1.4 1 0 0 1 1 1 0 Histone acetyltransferase subunit NuA4 HALZ PF02183.13 gi|57640274|ref|YP_182752.1| - 0.14 11.8 1.4 15 5.3 0.1 2.7 1 1 1 2 2 2 0 Homeobox associated leucine zipper bZIP_1 PF00170.16 gi|57640274|ref|YP_182752.1| - 0.22 11.4 5.9 0.41 10.6 0.5 2.6 2 1 1 3 3 3 0 bZIP transcription factor TSC22 PF01166.13 gi|57640274|ref|YP_182752.1| - 0.25 11.3 3.6 0.44 10.5 0.8 2.3 1 1 1 2 2 2 0 TSC-22/dip/bun family HEPN PF05168.9 gi|57640275|ref|YP_182753.1| - 1.1e-23 83.4 1.4 1.2e-23 83.2 0.9 1.0 1 0 0 1 1 1 1 HEPN domain EcKinase PF02958.15 gi|57640275|ref|YP_182753.1| - 0.023 13.8 0.0 0.024 13.7 0.0 1.0 1 0 0 1 1 1 0 Ecdysteroid kinase NTP_transf_2 PF01909.18 gi|57640276|ref|YP_182754.1| - 1.5e-09 38.0 0.4 3.1e-09 37.0 0.3 1.6 1 0 0 1 1 1 1 Nucleotidyltransferase domain HTH_20 PF12840.2 gi|57640276|ref|YP_182754.1| - 0.00016 21.3 0.1 0.0004 20.1 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|57640276|ref|YP_182754.1| - 0.00055 19.5 0.1 0.0015 18.1 0.0 1.7 1 0 0 1 1 1 1 MarR family Adenyl_cycl_N PF12633.2 gi|57640276|ref|YP_182754.1| - 0.003 17.1 0.0 0.0038 16.7 0.0 1.2 1 0 0 1 1 1 1 Adenylate cyclase NT domain HTH_41 PF14502.1 gi|57640276|ref|YP_182754.1| - 0.0033 16.9 0.1 0.059 12.9 0.0 2.5 2 0 0 2 2 2 1 Helix-turn-helix domain TrmB PF01978.14 gi|57640276|ref|YP_182754.1| - 0.011 15.4 0.1 0.038 13.6 0.1 1.9 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_28 PF13518.1 gi|57640276|ref|YP_182754.1| - 0.02 14.9 0.0 0.037 14.0 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_27 PF13463.1 gi|57640276|ref|YP_182754.1| - 0.023 15.0 0.2 0.074 13.3 0.0 2.0 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_5 PF01022.15 gi|57640276|ref|YP_182754.1| - 0.025 14.2 0.1 0.053 13.1 0.1 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Fe_dep_repress PF01325.14 gi|57640276|ref|YP_182754.1| - 0.038 13.9 0.1 0.084 12.8 0.1 1.6 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_Crp_2 PF13545.1 gi|57640276|ref|YP_182754.1| - 0.039 13.7 0.0 0.089 12.5 0.0 1.6 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Rrf2 PF02082.15 gi|57640276|ref|YP_182754.1| - 0.042 13.9 0.1 0.08 13.0 0.1 1.4 1 0 0 1 1 1 0 Transcriptional regulator DUF4423 PF14394.1 gi|57640276|ref|YP_182754.1| - 0.065 12.7 0.0 0.12 11.9 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_IclR PF09339.5 gi|57640276|ref|YP_182754.1| - 0.096 12.2 0.1 0.27 10.8 0.1 1.8 1 1 0 1 1 1 0 IclR helix-turn-helix domain MarR PF01047.17 gi|57640276|ref|YP_182754.1| - 0.098 12.3 0.0 0.2 11.3 0.0 1.5 1 0 0 1 1 1 0 MarR family DUF342 PF03961.8 gi|57640277|ref|YP_182755.1| - 0.0039 15.6 9.3 0.0041 15.6 6.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF342) Syntaxin-6_N PF09177.6 gi|57640277|ref|YP_182755.1| - 0.005 17.2 5.1 0.0083 16.5 3.6 1.4 1 0 0 1 1 1 1 Syntaxin 6, N-terminal DUF4613 PF15390.1 gi|57640277|ref|YP_182755.1| - 0.0067 14.6 0.7 0.0074 14.5 0.5 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4613) P4Ha_N PF08336.6 gi|57640277|ref|YP_182755.1| - 0.011 15.5 3.2 0.011 15.5 2.2 1.6 1 1 1 2 2 1 0 Prolyl 4-Hydroxylase alpha-subunit, N-terminal region DUF4201 PF13870.1 gi|57640277|ref|YP_182755.1| - 0.012 15.0 11.0 0.016 14.6 7.6 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4201) Metal_resist PF13801.1 gi|57640277|ref|YP_182755.1| - 0.013 15.4 4.0 0.016 15.1 2.8 1.1 1 0 0 1 1 1 0 Heavy-metal resistance DUF2408 PF10303.4 gi|57640277|ref|YP_182755.1| - 0.014 15.4 4.2 0.019 15.0 2.9 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2408) DUF2802 PF10975.3 gi|57640277|ref|YP_182755.1| - 0.015 15.0 2.6 0.57 9.9 0.1 2.6 2 1 1 3 3 2 0 Protein of unknown function (DUF2802) DUF972 PF06156.8 gi|57640277|ref|YP_182755.1| - 0.019 15.2 6.2 0.019 15.2 4.3 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF972) UPF0242 PF06785.6 gi|57640277|ref|YP_182755.1| - 0.021 13.4 8.0 0.024 13.3 5.5 1.0 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) MerR-DNA-bind PF09278.6 gi|57640277|ref|YP_182755.1| - 0.033 14.5 4.1 0.033 14.5 2.8 2.0 2 0 0 2 2 2 0 MerR, DNA binding MT PF12777.2 gi|57640277|ref|YP_182755.1| - 0.045 12.5 1.2 0.053 12.2 0.8 1.1 1 0 0 1 1 1 0 Microtubule-binding stalk of dynein motor EzrA PF06160.7 gi|57640277|ref|YP_182755.1| - 0.049 11.8 9.4 0.057 11.5 6.5 1.0 1 0 0 1 1 1 0 Septation ring formation regulator, EzrA Spc7 PF08317.6 gi|57640277|ref|YP_182755.1| - 0.054 12.1 10.5 0.06 12.0 7.3 1.1 1 0 0 1 1 1 0 Spc7 kinetochore protein Snapin_Pallidin PF14712.1 gi|57640277|ref|YP_182755.1| - 0.056 13.7 4.5 0.075 13.3 3.1 1.2 1 0 0 1 1 1 0 Snapin/Pallidin IncA PF04156.9 gi|57640277|ref|YP_182755.1| - 0.066 12.8 12.3 0.092 12.3 8.5 1.3 1 0 0 1 1 1 0 IncA protein Fib_alpha PF08702.5 gi|57640277|ref|YP_182755.1| - 0.076 13.1 1.8 0.098 12.7 0.6 1.3 1 1 0 1 1 1 0 Fibrinogen alpha/beta chain family APG6 PF04111.7 gi|57640277|ref|YP_182755.1| - 0.079 12.0 14.0 0.094 11.7 9.7 1.0 1 0 0 1 1 1 0 Autophagy protein Apg6 RBB1NT PF08169.6 gi|57640277|ref|YP_182755.1| - 0.079 12.9 0.0 0.15 11.9 0.0 1.5 1 0 0 1 1 1 0 RBB1NT (NUC162) domain IFT57 PF10498.4 gi|57640277|ref|YP_182755.1| - 0.085 11.5 8.9 0.09 11.4 6.1 1.0 1 0 0 1 1 1 0 Intra-flagellar transport protein 57 SOG2 PF10428.4 gi|57640277|ref|YP_182755.1| - 0.095 11.3 0.8 0.11 11.0 0.5 1.0 1 0 0 1 1 1 0 RAM signalling pathway protein WXG100 PF06013.7 gi|57640277|ref|YP_182755.1| - 0.1 12.6 0.0 0.21 11.5 0.0 1.5 1 1 0 1 1 1 0 Proteins of 100 residues with WXG Mnd1 PF03962.10 gi|57640277|ref|YP_182755.1| - 0.1 12.2 12.8 0.12 12.0 8.9 1.1 1 0 0 1 1 1 0 Mnd1 family ZYG-11_interact PF05884.7 gi|57640277|ref|YP_182755.1| - 0.11 11.5 0.0 0.13 11.3 0.0 1.1 1 0 0 1 1 1 0 Interactor of ZYG-11 DUF3584 PF12128.3 gi|57640277|ref|YP_182755.1| - 0.15 9.3 9.6 0.16 9.2 6.7 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) ADIP PF11559.3 gi|57640277|ref|YP_182755.1| - 0.15 11.9 10.7 0.19 11.6 7.4 1.1 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding Allexi_40kDa PF05549.6 gi|57640277|ref|YP_182755.1| - 0.16 11.2 0.9 0.16 11.2 0.6 1.2 1 0 0 1 1 1 0 Allexivirus 40kDa protein DUF3573 PF12097.3 gi|57640277|ref|YP_182755.1| - 0.16 10.5 0.3 0.16 10.5 0.2 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3573) FlxA PF14282.1 gi|57640277|ref|YP_182755.1| - 0.17 11.8 1.0 0.21 11.5 0.7 1.3 1 0 0 1 1 1 0 FlxA-like protein AAA_13 PF13166.1 gi|57640277|ref|YP_182755.1| - 0.22 9.9 8.1 0.25 9.7 5.6 1.1 1 0 0 1 1 1 0 AAA domain Phage_GPO PF05929.6 gi|57640277|ref|YP_182755.1| - 0.28 10.3 3.0 0.33 10.1 2.1 1.2 1 1 0 1 1 1 0 Phage capsid scaffolding protein (GPO) serine peptidase DUF607 PF04678.8 gi|57640277|ref|YP_182755.1| - 0.35 10.7 4.1 0.86 9.5 2.9 1.7 1 1 0 1 1 1 0 Protein of unknown function, DUF607 PA26 PF04636.8 gi|57640277|ref|YP_182755.1| - 0.46 9.1 2.7 0.49 9.0 1.9 1.0 1 0 0 1 1 1 0 PA26 p53-induced protein (sestrin) Prefoldin_2 PF01920.15 gi|57640277|ref|YP_182755.1| - 0.5 10.1 18.7 0.06 13.1 6.0 2.1 1 1 1 2 2 2 0 Prefoldin subunit Med2 PF11214.3 gi|57640277|ref|YP_182755.1| - 0.59 10.1 11.0 0.8 9.7 7.6 1.3 1 0 0 1 1 1 0 Mediator complex subunit 2 DivIVA PF05103.8 gi|57640277|ref|YP_182755.1| - 0.63 10.0 15.0 0.9 9.5 3.3 2.4 1 1 1 2 2 2 0 DivIVA protein Fzo_mitofusin PF04799.8 gi|57640277|ref|YP_182755.1| - 0.69 9.2 3.1 0.85 8.9 1.9 1.4 1 1 0 1 1 1 0 fzo-like conserved region DUF848 PF05852.6 gi|57640277|ref|YP_182755.1| - 0.78 9.5 9.7 0.9 9.3 6.7 1.2 1 0 0 1 1 1 0 Gammaherpesvirus protein of unknown function (DUF848) Atg14 PF10186.4 gi|57640277|ref|YP_182755.1| - 0.78 8.6 10.3 0.93 8.3 7.1 1.1 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 bZIP_1 PF00170.16 gi|57640277|ref|YP_182755.1| - 0.79 9.7 17.0 0.77 9.7 4.0 2.6 1 1 2 3 3 3 0 bZIP transcription factor Erp_C PF06780.6 gi|57640277|ref|YP_182755.1| - 0.91 9.3 13.2 1.2 9.0 9.2 1.1 1 0 0 1 1 1 0 Erp protein C-terminus DUF3435 PF11917.3 gi|57640277|ref|YP_182755.1| - 0.92 8.1 7.4 1 7.9 5.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3435) Occludin_ELL PF07303.8 gi|57640277|ref|YP_182755.1| - 0.92 10.2 8.0 1.4 9.6 5.3 1.5 1 1 1 2 2 2 0 Occludin homology domain Asp-B-Hydro_N PF05279.6 gi|57640277|ref|YP_182755.1| - 1 9.1 11.0 1 9.1 7.6 1.1 1 0 0 1 1 1 0 Aspartyl beta-hydroxylase N-terminal region Fmp27_WPPW PF10359.4 gi|57640277|ref|YP_182755.1| - 1.1 7.6 10.3 1.2 7.4 7.1 1.0 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain DUF501 PF04417.7 gi|57640277|ref|YP_182755.1| - 1.1 9.0 6.8 1.4 8.7 4.7 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF501) Ax_dynein_light PF10211.4 gi|57640277|ref|YP_182755.1| - 1.2 8.9 13.4 1.6 8.5 9.3 1.2 1 0 0 1 1 1 0 Axonemal dynein light chain Prefoldin PF02996.12 gi|57640277|ref|YP_182755.1| - 1.2 8.7 8.7 0.41 10.3 3.3 2.0 1 1 1 2 2 2 0 Prefoldin subunit Nif11 PF07862.6 gi|57640277|ref|YP_182755.1| - 1.3 8.9 4.7 6.6 6.7 0.9 2.8 2 1 0 2 2 2 0 Nitrogen fixation protein of unknown function FlaC_arch PF05377.6 gi|57640277|ref|YP_182755.1| - 1.4 8.8 7.7 1.2 9.0 0.5 2.6 1 1 2 3 3 3 0 Flagella accessory protein C (FlaC) V_ATPase_I PF01496.14 gi|57640277|ref|YP_182755.1| - 1.4 6.6 9.4 1.6 6.4 6.5 1.0 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family Seryl_tRNA_N PF02403.17 gi|57640277|ref|YP_182755.1| - 1.5 8.9 14.1 19 5.3 9.7 2.1 1 1 0 1 1 1 0 Seryl-tRNA synthetase N-terminal domain EMP24_GP25L PF01105.19 gi|57640277|ref|YP_182755.1| - 1.5 8.5 4.3 1.9 8.1 2.9 1.4 1 1 0 1 1 1 0 emp24/gp25L/p24 family/GOLD DUF4047 PF13256.1 gi|57640277|ref|YP_182755.1| - 1.8 8.5 7.8 2.3 8.2 5.4 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4047) YlqD PF11068.3 gi|57640277|ref|YP_182755.1| - 2 8.4 9.9 2.9 7.9 6.9 1.2 1 0 0 1 1 1 0 YlqD protein CorA PF01544.13 gi|57640277|ref|YP_182755.1| - 2.3 7.1 8.4 2.9 6.8 5.8 1.1 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein DUF4407 PF14362.1 gi|57640277|ref|YP_182755.1| - 2.5 6.9 5.0 4.1 6.2 3.4 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) bZIP_2 PF07716.10 gi|57640277|ref|YP_182755.1| - 2.9 7.7 18.1 4.4 7.2 5.3 2.3 1 1 1 2 2 2 0 Basic region leucine zipper AAA_32 PF13654.1 gi|57640277|ref|YP_182755.1| - 3.7 6.0 10.7 8.3 4.9 7.4 1.6 1 1 0 1 1 1 0 AAA domain DUF883 PF05957.8 gi|57640277|ref|YP_182755.1| - 4.6 7.7 8.6 5.6 7.4 2.4 2.1 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) ATP-synt_B PF00430.13 gi|57640277|ref|YP_182755.1| - 5.9 6.7 12.3 7.8 6.3 5.8 2.4 1 1 1 2 2 2 0 ATP synthase B/B' CF(0) GrpE PF01025.14 gi|57640277|ref|YP_182755.1| - 6.1 6.3 14.8 16 5.0 10.2 1.7 1 1 0 1 1 1 0 GrpE DUF2762 PF10960.3 gi|57640277|ref|YP_182755.1| - 8.3 6.1 9.7 1 9.0 4.0 1.8 1 1 1 2 2 1 0 Protein of unknown function (DUF2762) PIN PF01850.16 gi|57640278|ref|YP_182756.1| - 5.2e-13 49.3 0.0 9e-13 48.6 0.0 1.4 1 1 0 1 1 1 1 PIN domain PIN_3 PF13470.1 gi|57640278|ref|YP_182756.1| - 1.4e-08 35.4 0.0 1.8e-08 35.0 0.0 1.2 1 0 0 1 1 1 1 PIN domain BRCT PF00533.21 gi|57640278|ref|YP_182756.1| - 0.058 13.5 0.0 0.079 13.1 0.0 1.2 1 0 0 1 1 1 0 BRCA1 C Terminus (BRCT) domain Crp PF00325.15 gi|57640279|ref|YP_182757.1| - 0.061 12.7 0.1 10 5.6 0.0 2.3 2 0 0 2 2 2 0 Bacterial regulatory proteins, crp family HhH-GPD PF00730.20 gi|57640280|ref|YP_182758.1| - 2.8e-17 62.9 0.0 4.3e-17 62.3 0.0 1.3 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH_5 PF14520.1 gi|57640280|ref|YP_182758.1| - 5.7e-05 23.2 0.1 0.017 15.3 0.0 2.4 2 0 0 2 2 2 2 Helix-hairpin-helix domain OGG_N PF07934.7 gi|57640280|ref|YP_182758.1| - 0.047 13.6 0.0 0.12 12.3 0.0 1.7 2 0 0 2 2 2 0 8-oxoguanine DNA glycosylase, N-terminal domain GntR PF00392.16 gi|57640281|ref|YP_182759.1| - 0.023 14.1 0.0 0.33 10.4 0.0 2.5 3 0 0 3 3 3 0 Bacterial regulatory proteins, gntR family DUF4423 PF14394.1 gi|57640281|ref|YP_182759.1| - 0.056 12.9 0.0 0.062 12.8 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) NfeD PF01957.13 gi|57640282|ref|YP_182760.1| - 7.8e-37 126.6 9.6 7.8e-37 126.6 6.7 2.5 2 0 0 2 2 2 1 NfeD-like C-terminal, partner-binding CLP_protease PF00574.18 gi|57640282|ref|YP_182760.1| - 1.1e-08 34.9 0.5 1.6e-08 34.4 0.4 1.2 1 0 0 1 1 1 1 Clp protease SDH_sah PF01972.11 gi|57640282|ref|YP_182760.1| - 0.00028 19.7 1.1 0.00049 18.9 0.5 1.5 1 1 0 1 1 1 1 Serine dehydrogenase proteinase Peptidase_S49 PF01343.13 gi|57640282|ref|YP_182760.1| - 0.014 15.1 0.7 0.031 14.0 0.5 1.5 1 0 0 1 1 1 0 Peptidase family S49 TMEM154 PF15102.1 gi|57640282|ref|YP_182760.1| - 0.061 13.0 0.2 1.1 8.9 0.0 2.6 2 0 0 2 2 2 0 TMEM154 protein family ECH PF00378.15 gi|57640282|ref|YP_182760.1| - 0.065 12.3 0.9 0.13 11.3 0.7 1.5 1 1 0 1 1 1 0 Enoyl-CoA hydratase/isomerase family DUF4131 PF13567.1 gi|57640282|ref|YP_182760.1| - 4.9 6.5 11.1 1.5 8.2 2.1 2.6 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) Band_7 PF01145.20 gi|57640283|ref|YP_182761.1| - 1.2e-38 132.7 6.8 2e-38 132.1 4.7 1.3 1 0 0 1 1 1 1 SPFH domain / Band 7 family Band_7_1 PF13421.1 gi|57640283|ref|YP_182761.1| - 3.8e-05 23.3 0.6 0.00011 21.7 0.2 2.0 2 1 0 2 2 2 1 SPFH domain-Band 7 family CbiA PF01656.18 gi|57640284|ref|YP_182762.1| - 3.6e-35 121.1 1.4 4.3e-35 120.8 1.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|57640284|ref|YP_182762.1| - 4.4e-15 55.9 0.0 7.3e-15 55.2 0.0 1.4 2 0 0 2 2 2 1 AAA domain Fer4_NifH PF00142.13 gi|57640284|ref|YP_182762.1| - 5.7e-13 48.6 0.1 9e-07 28.3 0.0 2.1 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family MipZ PF09140.6 gi|57640284|ref|YP_182762.1| - 7e-10 38.4 0.1 2.9e-09 36.3 0.1 1.9 1 1 0 1 1 1 1 ATPase MipZ ArsA_ATPase PF02374.10 gi|57640284|ref|YP_182762.1| - 3.7e-07 29.4 4.0 3.8e-07 29.4 0.5 2.1 2 1 0 2 2 2 1 Anion-transporting ATPase YhjQ PF06564.7 gi|57640284|ref|YP_182762.1| - 1.2e-06 28.0 0.1 1.6e-06 27.6 0.0 1.3 1 1 0 1 1 1 1 YhjQ protein ParA PF10609.4 gi|57640284|ref|YP_182762.1| - 5e-05 23.1 0.2 0.00012 21.9 0.1 1.6 1 0 0 1 1 1 1 ParA/MinD ATPase like AAA_26 PF13500.1 gi|57640284|ref|YP_182762.1| - 0.00013 21.6 0.2 0.00013 21.6 0.1 1.9 2 0 0 2 2 2 1 AAA domain VirC1 PF07015.6 gi|57640284|ref|YP_182762.1| - 0.00042 19.4 1.9 0.00042 19.4 0.2 1.7 2 0 0 2 2 2 1 VirC1 protein AAA_19 PF13245.1 gi|57640284|ref|YP_182762.1| - 0.00063 19.4 0.3 0.0032 17.2 0.1 2.2 2 0 0 2 2 2 1 Part of AAA domain SRP54 PF00448.17 gi|57640284|ref|YP_182762.1| - 0.0025 17.2 0.9 0.0063 15.9 0.3 1.9 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain AAA_25 PF13481.1 gi|57640284|ref|YP_182762.1| - 0.0084 15.5 0.7 0.016 14.6 0.5 1.7 1 1 0 1 1 1 1 AAA domain APS_kinase PF01583.15 gi|57640284|ref|YP_182762.1| - 0.011 15.4 0.1 0.021 14.4 0.1 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_30 PF13604.1 gi|57640284|ref|YP_182762.1| - 0.015 14.9 0.1 0.023 14.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain VirB8 PF04335.8 gi|57640285|ref|YP_182763.1| - 0.0018 17.9 0.1 0.002 17.7 0.1 1.0 1 0 0 1 1 1 1 VirB8 protein TCR_zetazeta PF11628.3 gi|57640285|ref|YP_182763.1| - 0.0032 16.9 3.0 0.0051 16.2 2.0 1.2 1 0 0 1 1 1 1 T-cell surface glycoprotein CD3 zeta chain DUF843 PF05814.6 gi|57640285|ref|YP_182763.1| - 0.0065 16.2 1.4 0.0083 15.8 1.0 1.2 1 0 0 1 1 1 1 Baculovirus protein of unknown function (DUF843) Pho88 PF10032.4 gi|57640285|ref|YP_182763.1| - 0.015 14.5 0.2 0.017 14.3 0.1 1.0 1 0 0 1 1 1 0 Phosphate transport (Pho88) ABC2_membrane_3 PF12698.2 gi|57640285|ref|YP_182763.1| - 0.016 14.2 0.1 0.018 14.0 0.1 1.0 1 0 0 1 1 1 0 ABC-2 family transporter protein DUF4446 PF14584.1 gi|57640285|ref|YP_182763.1| - 0.067 13.0 0.3 0.075 12.8 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4446) DUF3479 PF11965.3 gi|57640285|ref|YP_182763.1| - 0.088 12.6 0.1 0.12 12.1 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3479) DUF3377 PF11857.3 gi|57640285|ref|YP_182763.1| - 0.17 11.5 0.5 0.22 11.1 0.4 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3377) DUF3201 PF11447.3 gi|57640285|ref|YP_182763.1| - 0.2 11.0 1.9 0.26 10.6 1.3 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3201) COX16 PF14138.1 gi|57640285|ref|YP_182763.1| - 0.67 10.1 3.8 1.9 8.7 2.6 1.8 1 1 0 1 1 1 0 Cytochrome c oxidase assembly protein COX16 DUF3149 PF11346.3 gi|57640285|ref|YP_182763.1| - 2.9 7.5 6.0 4 7.0 4.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3149) PYNP_C PF07831.8 gi|57640287|ref|YP_182765.1| - 1.6e-18 65.9 0.1 5.7e-18 64.1 0.1 2.0 1 0 0 1 1 1 1 Pyrimidine nucleoside phosphorylase C-terminal domain Glycos_trans_3N PF02885.12 gi|57640287|ref|YP_182765.1| - 5.7e-16 57.8 1.2 1.9e-15 56.1 0.2 2.4 3 0 0 3 3 3 1 Glycosyl transferase family, helical bundle domain Glycos_transf_3 PF00591.16 gi|57640287|ref|YP_182765.1| - 4.8e-15 55.6 1.0 1.7e-14 53.8 0.7 1.9 1 1 0 1 1 1 1 Glycosyl transferase family, a/b domain DUF2254 PF10011.4 gi|57640287|ref|YP_182765.1| - 9.6e-06 24.2 0.1 1.5e-05 23.6 0.0 1.2 1 0 0 1 1 1 1 Predicted membrane protein (DUF2254) Biotin_lipoyl_2 PF13533.1 gi|57640287|ref|YP_182765.1| - 0.00066 19.2 0.0 0.0016 18.0 0.0 1.6 1 0 0 1 1 1 1 Biotin-lipoyl like CDC48_N PF02359.13 gi|57640287|ref|YP_182765.1| - 0.0026 17.6 0.0 0.011 15.7 0.0 2.1 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), N-terminal domain Biotin_lipoyl PF00364.17 gi|57640287|ref|YP_182765.1| - 0.0029 17.2 0.0 0.012 15.2 0.0 2.0 1 0 0 1 1 1 1 Biotin-requiring enzyme Molydop_binding PF01568.16 gi|57640287|ref|YP_182765.1| - 0.013 15.2 0.0 0.036 13.8 0.0 1.8 2 0 0 2 2 2 0 Molydopterin dinucleotide binding domain HlyD PF00529.15 gi|57640287|ref|YP_182765.1| - 0.047 13.0 0.0 0.077 12.2 0.0 1.2 1 0 0 1 1 1 0 HlyD family secretion protein HlyD_2 PF12700.2 gi|57640287|ref|YP_182765.1| - 0.072 12.2 0.0 0.28 10.3 0.0 1.8 1 1 1 2 2 2 0 HlyD family secretion protein MoaC PF01967.16 gi|57640289|ref|YP_182767.1| - 1.7e-55 186.4 0.5 1.9e-55 186.2 0.3 1.0 1 0 0 1 1 1 1 MoaC family ABC_tran PF00005.22 gi|57640290|ref|YP_182768.1| - 4.9e-31 107.8 0.0 7.3e-31 107.2 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|57640290|ref|YP_182768.1| - 5.6e-13 49.4 2.9 3.3e-12 46.9 0.4 2.4 2 1 0 2 2 2 1 AAA domain DUF4162 PF13732.1 gi|57640290|ref|YP_182768.1| - 1.2e-11 44.9 0.1 2.4e-11 43.9 0.1 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_23 PF13476.1 gi|57640290|ref|YP_182768.1| - 0.0026 18.1 0.7 0.004 17.5 0.4 1.5 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|57640290|ref|YP_182768.1| - 0.0028 17.1 0.1 0.0049 16.3 0.1 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|57640290|ref|YP_182768.1| - 0.026 13.7 0.1 3.5 6.7 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_25 PF13481.1 gi|57640290|ref|YP_182768.1| - 0.044 13.1 0.0 0.19 11.0 0.0 2.0 1 1 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|57640290|ref|YP_182768.1| - 0.048 13.0 0.2 9.1 5.6 0.0 2.3 2 0 0 2 2 2 0 AAA-like domain SRP54 PF00448.17 gi|57640290|ref|YP_182768.1| - 0.067 12.6 0.0 0.12 11.7 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain MukB PF04310.7 gi|57640290|ref|YP_182768.1| - 0.14 11.4 0.2 0.42 9.8 0.0 1.7 2 0 0 2 2 2 0 MukB N-terminal RcsC PF09456.5 gi|57640290|ref|YP_182768.1| - 0.14 11.7 0.0 1.8 8.2 0.0 2.2 2 0 0 2 2 2 0 RcsC Alpha-Beta-Loop (ABL) NPCBM_assoc PF10633.4 gi|57640291|ref|YP_182769.1| - 5.2e-16 58.4 20.5 4.6e-08 32.9 3.0 6.5 6 1 0 6 6 6 4 NPCBM-associated, NEW3 domain of alpha-galactosidase CarboxypepD_reg PF13620.1 gi|57640291|ref|YP_182769.1| - 4e-07 30.0 12.1 3.6e-05 23.7 0.0 5.2 6 0 0 6 6 6 2 Carboxypeptidase regulatory-like domain DUF4397 PF14344.1 gi|57640291|ref|YP_182769.1| - 0.00011 22.4 10.9 0.069 13.4 0.1 5.0 5 0 0 5 5 5 2 Domain of unknown function (DUF4397) A2M_N PF01835.14 gi|57640291|ref|YP_182769.1| - 0.00027 21.1 0.3 4.2 7.6 0.0 4.7 5 1 1 6 6 6 1 MG2 domain PEGA PF08308.6 gi|57640291|ref|YP_182769.1| - 0.0027 17.4 0.0 0.23 11.3 0.0 4.0 3 0 0 3 3 3 1 PEGA domain DUF4480 PF13715.1 gi|57640291|ref|YP_182769.1| - 0.0077 16.2 0.2 1.9 8.6 0.0 4.2 4 0 0 4 4 4 1 Domain of unknown function (DUF4480) Big_3 PF07523.7 gi|57640291|ref|YP_182769.1| - 0.01 15.8 20.2 0.045 13.8 1.0 5.6 7 0 0 7 7 7 0 Bacterial Ig-like domain (group 3) DUF4469 PF14734.1 gi|57640291|ref|YP_182769.1| - 0.023 14.5 0.0 0.16 11.8 0.0 2.5 3 0 0 3 3 3 0 Domain of unknown function (DUF4469) with IG-like fold ABC2_membrane_2 PF12679.2 gi|57640292|ref|YP_182770.1| - 2.1e-59 200.6 19.2 2.4e-59 200.4 13.3 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|57640292|ref|YP_182770.1| - 1.8e-18 66.5 27.2 4e-18 65.4 18.9 1.6 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|57640292|ref|YP_182770.1| - 2e-14 53.3 19.8 2e-14 53.3 13.8 2.0 1 1 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|57640292|ref|YP_182770.1| - 1.9e-07 30.4 20.1 1.9e-07 30.4 13.9 2.7 3 0 0 3 3 3 1 ABC-2 type transporter ABC2_membrane_5 PF13346.1 gi|57640292|ref|YP_182770.1| - 0.00012 21.3 14.7 0.00012 21.3 10.2 2.7 2 1 1 3 3 3 1 ABC-2 family transporter protein RtcB PF01139.12 gi|57640293|ref|YP_182771.1| - 4.1e-159 530.0 0.2 4.6e-159 529.9 0.1 1.0 1 0 0 1 1 1 1 tRNA-splicing ligase RtcB DUF3492 PF11997.3 gi|57640293|ref|YP_182771.1| - 0.087 12.3 0.1 0.19 11.2 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF3492) Nol1_Nop2_Fmu_2 PF13636.1 gi|57640294|ref|YP_182772.1| - 8.6e-20 70.7 0.0 1.1e-19 70.3 0.0 1.1 1 0 0 1 1 1 1 pre-rRNA processing and ribosome biogenesis Nol1_Nop2_Fmu PF01189.12 gi|57640295|ref|YP_182773.1| - 4.5e-48 164.0 0.0 5.5e-48 163.7 0.0 1.1 1 0 0 1 1 1 1 NOL1/NOP2/sun family Methyltransf_26 PF13659.1 gi|57640295|ref|YP_182773.1| - 5.7e-06 26.3 0.0 9.5e-06 25.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.11 gi|57640295|ref|YP_182773.1| - 0.00037 20.1 0.0 0.00061 19.4 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_18 PF12847.2 gi|57640295|ref|YP_182773.1| - 0.01 16.4 0.0 0.021 15.4 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain FtsJ PF01728.14 gi|57640295|ref|YP_182773.1| - 0.11 12.4 0.0 0.22 11.4 0.0 1.5 1 1 0 1 1 1 0 FtsJ-like methyltransferase Archease PF01951.11 gi|57640296|ref|YP_182774.1| - 6e-47 159.0 0.1 6.6e-47 158.8 0.1 1.0 1 0 0 1 1 1 1 Archease protein family (MTH1598/TM1083) Pantoate_transf PF02548.10 gi|57640298|ref|YP_182776.1| - 6.2e-108 359.8 0.2 7.1e-108 359.6 0.2 1.0 1 0 0 1 1 1 1 Ketopantoate hydroxymethyltransferase PEP_mutase PF13714.1 gi|57640298|ref|YP_182776.1| - 1.1e-11 44.4 0.5 7.7e-10 38.3 0.1 2.1 2 0 0 2 2 2 2 Phosphoenolpyruvate phosphomutase NanE PF04131.9 gi|57640298|ref|YP_182776.1| - 0.021 13.8 0.9 3.8 6.4 0.0 3.0 3 0 0 3 3 3 0 Putative N-acetylmannosamine-6-phosphate epimerase BtpA PF03437.10 gi|57640298|ref|YP_182776.1| - 0.098 11.8 0.7 6.4 5.9 0.1 2.5 1 1 1 2 2 2 0 BtpA family Glycos_transf_2 PF00535.21 gi|57640299|ref|YP_182777.1| - 7e-40 136.4 0.0 8.6e-40 136.1 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|57640299|ref|YP_182777.1| - 5.2e-12 46.0 0.0 7.2e-12 45.5 0.0 1.4 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|57640299|ref|YP_182777.1| - 3.4e-06 26.3 0.0 5.1e-06 25.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|57640299|ref|YP_182777.1| - 0.0006 20.0 0.0 0.0012 19.1 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 PAP2 PF01569.16 gi|57640300|ref|YP_182778.1| - 1.4e-09 37.7 7.8 1.4e-09 37.7 5.4 2.7 2 1 1 3 3 3 1 PAP2 superfamily PAP2_3 PF14378.1 gi|57640300|ref|YP_182778.1| - 0.00056 19.4 9.7 0.00056 19.4 6.7 2.2 2 1 0 2 2 2 1 PAP2 superfamily DUF2768 PF10966.3 gi|57640300|ref|YP_182778.1| - 0.35 11.0 4.9 5.7 7.1 0.0 3.4 3 0 0 3 3 3 0 Protein of unknown function (DUF2768) DUF4293 PF14126.1 gi|57640300|ref|YP_182778.1| - 0.38 10.6 6.4 0.18 11.6 1.2 2.6 1 1 2 3 3 3 0 Domain of unknown function (DUF4293) ThiI PF02568.9 gi|57640301|ref|YP_182779.1| - 1.8e-65 220.0 0.0 2e-65 219.9 0.0 1.0 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) QueC PF06508.8 gi|57640301|ref|YP_182779.1| - 1.2e-08 34.5 0.0 8.8e-06 25.1 0.0 2.3 1 1 0 1 1 1 1 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.11 gi|57640301|ref|YP_182779.1| - 0.0011 17.5 0.0 0.0078 14.8 0.0 1.9 2 0 0 2 2 2 1 tRNA methyl transferase PAPS_reduct PF01507.14 gi|57640301|ref|YP_182779.1| - 0.044 13.6 0.0 0.054 13.3 0.0 1.1 1 0 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family ATP_bind_3 PF01171.15 gi|57640301|ref|YP_182779.1| - 0.047 13.1 0.0 0.61 9.5 0.0 2.0 2 0 0 2 2 2 0 PP-loop family SpoOE-like PF09388.5 gi|57640301|ref|YP_182779.1| - 0.081 12.4 0.2 20 4.8 0.0 2.7 3 0 0 3 3 3 0 Spo0E like sporulation regulatory protein DUF998 PF06197.8 gi|57640302|ref|YP_182780.1| - 2.8e-19 69.1 17.5 3.2e-19 68.9 12.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF998) DUF2919 PF11143.3 gi|57640302|ref|YP_182780.1| - 0.14 11.9 6.4 0.14 11.9 2.9 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF2919) DUF3043 PF11241.3 gi|57640302|ref|YP_182780.1| - 0.98 8.9 5.3 2.3 7.7 0.9 2.4 1 1 2 3 3 3 0 Protein of unknown function (DUF3043) DUF3278 PF11683.3 gi|57640302|ref|YP_182780.1| - 2 8.4 4.4 5.8 6.9 0.1 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF3278) ThiI PF02568.9 gi|57640303|ref|YP_182781.1| - 2.5e-68 229.4 0.1 6e-68 228.2 0.0 1.7 2 0 0 2 2 2 1 Thiamine biosynthesis protein (ThiI) THUMP PF02926.12 gi|57640303|ref|YP_182781.1| - 2e-27 95.8 7.0 2e-27 95.8 4.8 2.0 2 0 0 2 2 2 1 THUMP domain QueC PF06508.8 gi|57640303|ref|YP_182781.1| - 2.1e-08 33.7 0.0 5.3e-06 25.8 0.0 2.6 1 1 0 1 1 1 1 Queuosine biosynthesis protein QueC PAPS_reduct PF01507.14 gi|57640303|ref|YP_182781.1| - 2.7e-06 27.3 0.2 7e-06 25.9 0.0 1.7 2 0 0 2 2 2 1 Phosphoadenosine phosphosulfate reductase family tRNA_Me_trans PF03054.11 gi|57640303|ref|YP_182781.1| - 1.1e-05 24.2 0.0 8.8e-05 21.2 0.0 2.2 2 0 0 2 2 2 1 tRNA methyl transferase Asn_synthase PF00733.16 gi|57640303|ref|YP_182781.1| - 2.9e-05 23.7 0.0 5e-05 22.9 0.0 1.3 1 0 0 1 1 1 1 Asparagine synthase ATP_bind_3 PF01171.15 gi|57640303|ref|YP_182781.1| - 0.015 14.8 0.0 0.18 11.2 0.0 2.3 1 1 0 1 1 1 0 PP-loop family Oxidored_nitro PF00148.14 gi|57640303|ref|YP_182781.1| - 0.063 11.9 0.1 0.81 8.2 0.0 2.0 1 1 1 2 2 2 0 Nitrogenase component 1 type Oxidoreductase YscJ_FliF PF01514.12 gi|57640303|ref|YP_182781.1| - 0.076 12.1 0.0 0.17 11.0 0.0 1.5 1 0 0 1 1 1 0 Secretory protein of YscJ/FliF family NAD_synthase PF02540.12 gi|57640303|ref|YP_182781.1| - 0.1 11.4 0.3 0.62 8.9 0.1 2.4 2 1 1 3 3 3 0 NAD synthase TraX PF05857.6 gi|57640304|ref|YP_182782.1| - 0.039 13.5 1.2 0.044 13.4 0.8 1.1 1 0 0 1 1 1 0 TraX protein Nitroreductase PF00881.19 gi|57640305|ref|YP_182783.1| - 2.3e-35 121.8 0.0 2.7e-35 121.6 0.0 1.0 1 0 0 1 1 1 1 Nitroreductase family YcfA PF07927.7 gi|57640306|ref|YP_182784.1| - 1.2e-08 34.7 1.5 1.8e-08 34.1 1.1 1.3 1 0 0 1 1 1 1 YcfA-like protein DUF1456 PF07308.8 gi|57640306|ref|YP_182784.1| - 0.049 13.6 0.0 0.14 12.2 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1456) UPF0150 PF03681.10 gi|57640307|ref|YP_182785.1| - 0.0092 15.6 0.2 0.0092 15.6 0.1 1.8 3 0 0 3 3 3 1 Uncharacterised protein family (UPF0150) SRP54_N PF02881.14 gi|57640307|ref|YP_182785.1| - 1.6 8.8 5.4 0.49 10.5 0.7 2.1 2 0 0 2 2 2 0 SRP54-type protein, helical bundle domain GnsAB PF08178.6 gi|57640308|ref|YP_182786.1| - 0.0016 18.0 1.1 0.0019 17.8 0.7 1.2 1 0 0 1 1 1 1 GnsA/GnsB family Vps52 PF04129.7 gi|57640308|ref|YP_182786.1| - 0.05 12.1 0.1 0.053 12.0 0.1 1.0 1 0 0 1 1 1 0 Vps52 / Sac2 family D5_N PF08706.6 gi|57640308|ref|YP_182786.1| - 0.077 13.0 0.1 0.087 12.9 0.1 1.0 1 0 0 1 1 1 0 D5 N terminal like Phage_Integr_2 PF13009.1 gi|57640308|ref|YP_182786.1| - 0.099 11.5 0.1 0.12 11.2 0.1 1.0 1 0 0 1 1 1 0 Putative phage integrase DUF964 PF06133.6 gi|57640308|ref|YP_182786.1| - 0.1 12.6 0.7 0.29 11.1 0.4 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF964) RHH_1 PF01402.16 gi|57640308|ref|YP_182786.1| - 0.18 11.7 0.6 3 7.8 0.0 2.2 2 0 0 2 2 2 0 Ribbon-helix-helix protein, copG family PIN PF01850.16 gi|57640309|ref|YP_182787.1| - 3.1e-11 43.6 0.3 6.7e-11 42.5 0.2 1.5 1 1 0 1 1 1 1 PIN domain Asp_Glu_race PF01177.17 gi|57640310|ref|YP_182788.1| - 1.3e-31 110.1 0.0 1.5e-31 109.9 0.0 1.0 1 0 0 1 1 1 1 Asp/Glu/Hydantoin racemase AroM PF07302.6 gi|57640310|ref|YP_182788.1| - 0.0011 18.3 0.0 0.28 10.4 0.0 2.4 1 1 1 2 2 2 2 AroM protein ROK PF00480.15 gi|57640310|ref|YP_182788.1| - 0.068 12.9 0.1 0.53 10.1 0.0 2.2 2 1 0 2 2 2 0 ROK family ADP_PFK_GK PF04587.10 gi|57640311|ref|YP_182789.1| - 1.6e-186 619.8 0.0 1.9e-186 619.6 0.0 1.0 1 0 0 1 1 1 1 ADP-specific Phosphofructokinase/Glucokinase conserved region DUF835 PF05763.7 gi|57640312|ref|YP_182790.1| - 5.1e-34 116.7 0.0 6.1e-34 116.5 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF835) ParBc PF02195.13 gi|57640313|ref|YP_182791.1| - 1.4e-19 70.0 0.0 2.6e-19 69.0 0.0 1.6 1 0 0 1 1 1 1 ParB-like nuclease domain DUF1015 PF06245.6 gi|57640313|ref|YP_182791.1| - 0.00013 20.6 0.8 0.17 10.3 0.0 2.5 2 1 1 3 3 3 2 Protein of unknown function (DUF1015) DUF763 PF05559.6 gi|57640314|ref|YP_182792.1| - 2.9e-133 443.7 0.0 3.4e-133 443.5 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF763) DUF89 PF01937.14 gi|57640315|ref|YP_182793.1| - 1e-59 202.1 0.1 1.2e-59 201.9 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF89 Exonuc_VII_S PF02609.11 gi|57640315|ref|YP_182793.1| - 0.2 11.4 3.8 1.5 8.6 0.1 2.6 2 0 0 2 2 2 0 Exonuclease VII small subunit DUF1049 PF06305.6 gi|57640317|ref|YP_182795.1| - 0.19 11.2 1.9 0.26 10.8 0.4 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1049) RHH_1 PF01402.16 gi|57640318|ref|YP_182796.1| - 0.00036 20.3 0.1 0.0005 19.8 0.0 1.4 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family PSK_trans_fac PF07704.6 gi|57640318|ref|YP_182796.1| - 0.023 15.3 0.0 0.026 15.1 0.0 1.1 1 0 0 1 1 1 0 Rv0623-like transcription factor HicB PF05534.7 gi|57640318|ref|YP_182796.1| - 0.029 13.9 0.0 0.038 13.5 0.0 1.2 1 0 0 1 1 1 0 HicB family ParG PF09274.5 gi|57640318|ref|YP_182796.1| - 0.13 12.1 0.0 0.15 11.9 0.0 1.1 1 0 0 1 1 1 0 ParG DUF4203 PF13886.1 gi|57640319|ref|YP_182797.1| - 0.054 12.9 5.4 0.046 13.1 3.2 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4203) PEGA PF08308.6 gi|57640320|ref|YP_182798.1| - 0.00011 21.9 1.1 0.00082 19.1 0.1 3.0 3 0 0 3 3 3 1 PEGA domain CarboxypepD_reg PF13620.1 gi|57640320|ref|YP_182798.1| - 0.00017 21.6 8.0 0.00084 19.3 0.2 4.3 4 0 0 4 4 4 1 Carboxypeptidase regulatory-like domain DUF4480 PF13715.1 gi|57640320|ref|YP_182798.1| - 0.00062 19.7 3.1 0.0026 17.7 0.1 3.5 4 1 0 4 4 4 1 Domain of unknown function (DUF4480) DUF3244 PF11589.3 gi|57640320|ref|YP_182798.1| - 0.0012 18.4 0.1 0.02 14.5 0.0 2.9 2 0 0 2 2 2 1 Domain of unknown function (DUF3244) LptE PF04390.7 gi|57640320|ref|YP_182798.1| - 0.085 12.5 0.2 0.93 9.2 0.0 2.4 2 0 0 2 2 2 0 Lipopolysaccharide-assembly ApoLp-III PF07464.6 gi|57640321|ref|YP_182799.1| - 0.22 11.5 9.3 8.3 6.4 4.7 2.3 2 0 0 2 2 2 0 Apolipophorin-III precursor (apoLp-III) PhoU PF01895.14 gi|57640321|ref|YP_182799.1| - 1.4 9.4 4.2 0.57 10.6 0.5 2.2 2 1 0 2 2 2 0 PhoU domain Tim17 PF02466.14 gi|57640322|ref|YP_182800.1| - 0.03 14.3 1.0 0.092 12.7 0.2 2.0 1 1 1 2 2 2 0 Tim17/Tim22/Tim23/Pmp24 family EamA PF00892.15 gi|57640322|ref|YP_182800.1| - 0.065 13.2 0.0 0.065 13.2 0.0 2.5 2 1 0 2 2 2 0 EamA-like transporter family DUF4396 PF14342.1 gi|57640322|ref|YP_182800.1| - 0.27 11.3 8.3 5.4 7.1 3.7 2.9 2 1 0 2 2 2 0 Domain of unknown function (DUF4396) DUF3902 PF13042.1 gi|57640322|ref|YP_182800.1| - 2 7.6 6.4 1.1 8.5 2.4 2.0 2 1 0 2 2 2 0 Protein of unknown function (DUF3902) DUF4234 PF14018.1 gi|57640322|ref|YP_182800.1| - 3 7.6 4.9 12 5.6 0.0 2.9 3 1 0 3 3 3 0 Domain of unknown function (DUF4234) Glyco_transf_22 PF03901.12 gi|57640323|ref|YP_182801.1| - 0.051 12.5 0.9 0.052 12.5 0.6 1.1 1 0 0 1 1 1 0 Alg9-like mannosyltransferase family DUF805 PF05656.9 gi|57640323|ref|YP_182801.1| - 0.18 11.6 6.7 0.22 11.3 4.6 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF805) DUF973 PF06157.6 gi|57640323|ref|YP_182801.1| - 0.26 10.2 3.1 0.25 10.2 2.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF973) ABC2_membrane_3 PF12698.2 gi|57640323|ref|YP_182801.1| - 0.43 9.5 7.5 0.57 9.1 5.2 1.2 1 0 0 1 1 1 0 ABC-2 family transporter protein DUF3816 PF12822.2 gi|57640323|ref|YP_182801.1| - 9 6.1 10.4 30 4.4 7.4 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF3816) fn3 PF00041.16 gi|57640325|ref|YP_182803.1| - 0.062 13.4 3.1 0.091 12.8 0.7 2.3 1 1 1 2 2 2 0 Fibronectin type III domain FixQ PF05545.6 gi|57640325|ref|YP_182803.1| - 0.1 12.2 0.3 0.24 11.0 0.2 1.6 1 0 0 1 1 1 0 Cbb3-type cytochrome oxidase component FixQ Cadherin PF00028.12 gi|57640325|ref|YP_182803.1| - 0.16 12.2 1.5 0.91 9.8 0.2 2.5 2 1 0 2 2 2 0 Cadherin domain PepSY PF03413.14 gi|57640326|ref|YP_182804.1| - 0.002 18.7 0.4 0.0032 18.0 0.3 1.3 1 0 0 1 1 1 1 Peptidase propeptide and YPEB domain bZIP_1 PF00170.16 gi|57640328|ref|YP_182806.1| - 8.9e-06 25.5 23.5 0.0064 16.4 6.2 3.6 1 1 3 4 4 4 2 bZIP transcription factor HALZ PF02183.13 gi|57640328|ref|YP_182806.1| - 1.6e-05 24.5 24.1 0.031 14.0 5.9 4.0 2 2 2 4 4 4 3 Homeobox associated leucine zipper DUF484 PF04340.7 gi|57640328|ref|YP_182806.1| - 0.00012 21.6 3.1 0.00022 20.8 2.1 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF484 V_ATPase_I PF01496.14 gi|57640328|ref|YP_182806.1| - 0.00064 17.7 4.3 0.00092 17.1 3.0 1.3 1 0 0 1 1 1 1 V-type ATPase 116kDa subunit family DUF4515 PF14988.1 gi|57640328|ref|YP_182806.1| - 0.0011 18.6 21.1 0.2 11.3 4.2 2.4 1 1 1 2 2 2 2 Domain of unknown function (DUF4515) DivIC PF04977.10 gi|57640328|ref|YP_182806.1| - 0.0012 18.2 27.5 0.022 14.2 2.6 4.1 2 1 2 4 4 4 2 Septum formation initiator DUF904 PF06005.7 gi|57640328|ref|YP_182806.1| - 0.0012 19.0 24.7 0.013 15.7 8.7 2.3 2 0 0 2 2 2 2 Protein of unknown function (DUF904) APG6 PF04111.7 gi|57640328|ref|YP_182806.1| - 0.0025 16.9 14.0 0.0036 16.3 9.7 1.3 1 0 0 1 1 1 1 Autophagy protein Apg6 DUF342 PF03961.8 gi|57640328|ref|YP_182806.1| - 0.0033 15.9 6.5 0.004 15.6 4.5 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF342) GAS PF13851.1 gi|57640328|ref|YP_182806.1| - 0.0047 16.1 22.0 0.0076 15.4 15.3 1.2 1 0 0 1 1 1 1 Growth-arrest specific micro-tubule binding DUF972 PF06156.8 gi|57640328|ref|YP_182806.1| - 0.016 15.5 19.6 0.43 10.9 3.0 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF972) Tropomyosin_1 PF12718.2 gi|57640328|ref|YP_182806.1| - 0.016 15.0 23.1 0.025 14.4 16.0 1.1 1 0 0 1 1 1 0 Tropomyosin like Myosin_tail_1 PF01576.14 gi|57640328|ref|YP_182806.1| - 0.017 12.9 17.0 0.028 12.1 11.8 1.3 1 0 0 1 1 1 0 Myosin tail TBPIP PF07106.8 gi|57640328|ref|YP_182806.1| - 0.017 14.6 15.6 0.03 13.8 10.8 1.5 1 0 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) CENP-F_leu_zip PF10473.4 gi|57640328|ref|YP_182806.1| - 0.019 14.8 20.9 0.13 12.0 4.7 2.2 1 1 1 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Reo_sigmaC PF04582.7 gi|57640328|ref|YP_182806.1| - 0.02 14.0 2.7 0.032 13.4 1.9 1.3 1 0 0 1 1 1 0 Reovirus sigma C capsid protein Striatin PF08232.7 gi|57640328|ref|YP_182806.1| - 0.024 14.9 19.2 0.15 12.4 3.5 2.4 1 1 1 2 2 2 0 Striatin family Shugoshin_N PF07558.6 gi|57640328|ref|YP_182806.1| - 0.033 13.8 4.2 0.033 13.8 2.9 3.1 2 1 1 3 3 2 0 Shugoshin N-terminal coiled-coil region DUF4200 PF13863.1 gi|57640328|ref|YP_182806.1| - 0.035 14.0 3.9 0.035 14.0 2.7 2.5 2 1 0 2 2 2 0 Domain of unknown function (DUF4200) Filament PF00038.16 gi|57640328|ref|YP_182806.1| - 0.04 13.3 16.7 0.041 13.3 10.8 1.5 1 1 0 1 1 1 0 Intermediate filament protein CCDC155 PF14662.1 gi|57640328|ref|YP_182806.1| - 0.058 12.9 24.1 1.5 8.3 16.6 2.1 1 1 0 1 1 1 0 Coiled-coil region of CCDC155 DUF4140 PF13600.1 gi|57640328|ref|YP_182806.1| - 0.06 13.8 8.8 0.78 10.2 0.8 2.5 1 1 1 2 2 2 0 N-terminal domain of unknown function (DUF4140) Hemerythrin PF01814.18 gi|57640328|ref|YP_182806.1| - 0.086 12.9 2.3 9.8 6.3 0.1 3.1 2 1 3 5 5 4 0 Hemerythrin HHE cation binding domain TSC22 PF01166.13 gi|57640328|ref|YP_182806.1| - 0.11 12.4 17.5 0.05 13.5 4.2 3.0 1 1 2 3 3 3 0 TSC-22/dip/bun family DUF2730 PF10805.3 gi|57640328|ref|YP_182806.1| - 0.12 12.1 3.1 0.27 10.9 2.1 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF2730) Atg14 PF10186.4 gi|57640328|ref|YP_182806.1| - 0.15 11.0 19.7 0.21 10.4 13.6 1.1 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 Fmp27_WPPW PF10359.4 gi|57640328|ref|YP_182806.1| - 0.15 10.4 10.8 0.24 9.7 7.5 1.2 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain CorA PF01544.13 gi|57640328|ref|YP_182806.1| - 0.18 10.7 8.0 0.31 10.0 5.5 1.4 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein TMF_TATA_bd PF12325.3 gi|57640328|ref|YP_182806.1| - 0.19 11.4 19.8 0.56 9.9 6.0 2.3 1 1 1 2 2 2 0 TATA element modulatory factor 1 TATA binding ATG16 PF08614.6 gi|57640328|ref|YP_182806.1| - 0.21 11.4 19.3 0.4 10.4 13.2 1.6 1 1 0 1 1 1 0 Autophagy protein 16 (ATG16) DUF3450 PF11932.3 gi|57640328|ref|YP_182806.1| - 0.21 10.8 18.6 1.1 8.4 4.6 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF3450) Exonuc_VII_L PF02601.10 gi|57640328|ref|YP_182806.1| - 0.3 10.2 10.0 0.43 9.7 7.0 1.2 1 0 0 1 1 1 0 Exonuclease VII, large subunit IncA PF04156.9 gi|57640328|ref|YP_182806.1| - 0.35 10.4 22.8 21 4.6 15.1 2.5 1 1 0 1 1 1 0 IncA protein Spc24 PF08286.6 gi|57640328|ref|YP_182806.1| - 0.4 10.3 21.9 0.93 9.2 4.0 2.3 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 RasGAP_C PF03836.10 gi|57640328|ref|YP_182806.1| - 0.43 10.2 17.1 0.023 14.3 5.1 2.1 1 1 1 2 2 2 0 RasGAP C-terminus LON PF02190.11 gi|57640328|ref|YP_182806.1| - 0.66 9.6 6.7 0.97 9.0 4.1 1.7 1 1 1 2 2 2 0 ATP-dependent protease La (LON) domain DUF4201 PF13870.1 gi|57640328|ref|YP_182806.1| - 0.73 9.2 19.5 1.1 8.6 3.7 2.2 1 1 2 3 3 3 0 Domain of unknown function (DUF4201) Ax_dynein_light PF10211.4 gi|57640328|ref|YP_182806.1| - 0.83 9.4 19.1 1.3 8.8 5.1 2.3 1 1 1 2 2 2 0 Axonemal dynein light chain DUF2935 PF11155.3 gi|57640328|ref|YP_182806.1| - 0.89 9.6 8.8 0.54 10.3 4.1 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF2935) CALCOCO1 PF07888.6 gi|57640328|ref|YP_182806.1| - 0.98 7.6 13.0 1.4 7.0 9.0 1.2 1 0 0 1 1 1 0 Calcium binding and coiled-coil domain (CALCOCO1) like FlaC_arch PF05377.6 gi|57640328|ref|YP_182806.1| - 1.3 8.9 10.9 5.3 7.0 3.2 3.2 2 1 1 3 3 3 0 Flagella accessory protein C (FlaC) Leu_zip PF15294.1 gi|57640328|ref|YP_182806.1| - 1.4 7.9 22.4 17 4.4 15.5 2.1 1 1 0 1 1 1 0 Leucine zipper Ribosomal_L29 PF00831.18 gi|57640328|ref|YP_182806.1| - 1.4 8.6 16.5 1.1 8.9 1.2 3.5 1 1 2 3 3 3 0 Ribosomal L29 protein Nup54 PF13874.1 gi|57640328|ref|YP_182806.1| - 1.5 8.4 15.5 3.2 7.3 3.9 2.3 1 1 1 2 2 2 0 Nucleoporin complex subunit 54 DUF724 PF05266.9 gi|57640328|ref|YP_182806.1| - 1.5 8.3 11.9 2 7.9 7.6 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF724) bZIP_2 PF07716.10 gi|57640328|ref|YP_182806.1| - 1.6 8.6 33.9 2.3 8.1 2.9 4.6 3 1 2 5 5 4 0 Basic region leucine zipper bZIP_Maf PF03131.12 gi|57640328|ref|YP_182806.1| - 1.7 8.9 14.5 6.4 7.1 2.7 3.2 2 1 0 3 3 3 0 bZIP Maf transcription factor NYD-SP28_assoc PF14775.1 gi|57640328|ref|YP_182806.1| - 2 8.1 27.0 2.5 7.8 0.3 4.3 3 1 1 4 4 4 0 Sperm tail C-terminal domain Rootletin PF15035.1 gi|57640328|ref|YP_182806.1| - 2.2 8.2 20.5 0.82 9.6 6.1 2.2 1 1 1 2 2 2 0 Ciliary rootlet component, centrosome cohesion WXG100 PF06013.7 gi|57640328|ref|YP_182806.1| - 2.5 8.1 7.5 6.4 6.8 0.8 2.6 1 1 1 2 2 2 0 Proteins of 100 residues with WXG Spc7 PF08317.6 gi|57640328|ref|YP_182806.1| - 2.7 6.5 18.6 5 5.6 12.9 1.4 1 0 0 1 1 1 0 Spc7 kinetochore protein FlxA PF14282.1 gi|57640328|ref|YP_182806.1| - 2.8 7.9 20.0 6.9 6.6 4.7 2.6 1 1 1 2 2 2 0 FlxA-like protein Cortex-I_coil PF09304.5 gi|57640328|ref|YP_182806.1| - 2.9 7.9 19.3 2.7 8.0 2.6 2.4 1 1 1 2 2 2 0 Cortexillin I, coiled coil Macoilin PF09726.4 gi|57640328|ref|YP_182806.1| - 3.6 5.7 18.5 11 4.0 12.8 1.6 1 1 0 1 1 1 0 Transmembrane protein Syntaxin_2 PF14523.1 gi|57640328|ref|YP_182806.1| - 3.7 7.6 18.0 3.3 7.8 8.9 2.4 1 1 1 2 2 2 0 Syntaxin-like protein Mnd1 PF03962.10 gi|57640328|ref|YP_182806.1| - 4 7.0 17.3 6.3 6.4 11.3 1.7 1 1 0 1 1 1 0 Mnd1 family CENP-H PF05837.7 gi|57640328|ref|YP_182806.1| - 4.8 7.4 20.5 0.85 9.8 8.5 2.4 1 1 1 2 2 2 0 Centromere protein H (CENP-H) SlyX PF04102.7 gi|57640328|ref|YP_182806.1| - 5.5 7.4 16.1 0.057 13.8 3.9 2.7 2 1 2 4 4 2 0 SlyX ADIP PF11559.3 gi|57640328|ref|YP_182806.1| - 5.5 6.8 25.8 9.1 6.1 6.4 2.3 1 1 1 2 2 2 0 Afadin- and alpha -actinin-Binding TMF_DNA_bd PF12329.3 gi|57640328|ref|YP_182806.1| - 5.5 6.8 27.9 2.4 8.0 9.2 2.8 1 1 1 2 2 2 0 TATA element modulatory factor 1 DNA binding CDC37_N PF03234.9 gi|57640328|ref|YP_182806.1| - 6.2 7.1 13.3 16 5.8 9.2 1.7 1 1 0 1 1 1 0 Cdc37 N terminal kinase binding DivIVA PF05103.8 gi|57640328|ref|YP_182806.1| - 6.4 6.8 21.9 14 5.6 8.2 3.2 1 1 1 2 2 2 0 DivIVA protein GrpE PF01025.14 gi|57640328|ref|YP_182806.1| - 6.5 6.2 19.3 1.2 8.6 3.5 2.4 1 1 1 2 2 2 0 GrpE Phage_GP20 PF06810.6 gi|57640328|ref|YP_182806.1| - 8.7 5.7 20.0 10 5.5 13.0 1.7 1 1 1 2 2 2 0 Phage minor structural protein GP20 AAA_10 PF12846.2 gi|57640329|ref|YP_182807.1| - 1.6e-13 50.7 0.0 1e-12 48.1 0.0 2.0 1 1 0 1 1 1 1 AAA-like domain DUF87 PF01935.12 gi|57640329|ref|YP_182807.1| - 9.5e-11 41.9 0.0 5.2e-10 39.5 0.0 2.0 1 1 0 1 1 1 1 Domain of unknown function DUF87 FtsK_SpoIIIE PF01580.13 gi|57640329|ref|YP_182807.1| - 9e-06 25.2 0.0 0.00084 18.8 0.0 2.2 2 0 0 2 2 2 1 FtsK/SpoIIIE family AAA_22 PF13401.1 gi|57640329|ref|YP_182807.1| - 8.5e-05 22.7 0.0 0.0025 17.9 0.0 2.4 2 1 0 2 2 2 1 AAA domain Arch_ATPase PF01637.13 gi|57640329|ref|YP_182807.1| - 9.1e-05 22.2 0.9 0.0029 17.3 0.2 2.2 2 0 0 2 2 2 1 Archaeal ATPase NACHT PF05729.7 gi|57640329|ref|YP_182807.1| - 0.00036 20.2 0.0 0.00061 19.4 0.0 1.4 1 0 0 1 1 1 1 NACHT domain TrwB_AAD_bind PF10412.4 gi|57640329|ref|YP_182807.1| - 0.0024 16.5 0.0 0.075 11.6 0.0 2.2 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain AAA_18 PF13238.1 gi|57640329|ref|YP_182807.1| - 0.0036 17.6 0.1 0.024 14.9 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_5 PF07728.9 gi|57640329|ref|YP_182807.1| - 0.0044 16.7 0.0 0.033 13.9 0.0 2.1 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_17 PF13207.1 gi|57640329|ref|YP_182807.1| - 0.0056 17.4 0.1 0.051 14.3 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA PF00004.24 gi|57640329|ref|YP_182807.1| - 0.0067 16.6 0.0 1.2 9.3 0.0 2.5 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_23 PF13476.1 gi|57640329|ref|YP_182807.1| - 0.0091 16.3 0.0 0.019 15.2 0.0 1.5 1 0 0 1 1 1 1 AAA domain Miro PF08477.8 gi|57640329|ref|YP_182807.1| - 0.016 15.6 0.0 0.049 14.1 0.0 1.9 1 0 0 1 1 1 0 Miro-like protein DUF815 PF05673.8 gi|57640329|ref|YP_182807.1| - 0.027 13.3 0.0 0.072 11.9 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF815) ABC_tran PF00005.22 gi|57640329|ref|YP_182807.1| - 0.033 14.5 0.0 0.062 13.5 0.0 1.5 1 0 0 1 1 1 0 ABC transporter RNA_helicase PF00910.17 gi|57640329|ref|YP_182807.1| - 0.077 13.1 0.0 0.2 11.8 0.0 1.7 1 0 0 1 1 1 0 RNA helicase AAA_24 PF13479.1 gi|57640329|ref|YP_182807.1| - 0.11 12.0 0.0 0.51 9.8 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.1 gi|57640329|ref|YP_182807.1| - 0.15 12.0 0.0 0.49 10.3 0.0 1.8 2 0 0 2 2 2 0 AAA ATPase domain ALIX_LYPXL_bnd PF13949.1 gi|57640331|ref|YP_182809.1| - 0.024 13.5 0.6 0.027 13.4 0.4 1.0 1 0 0 1 1 1 0 ALIX V-shaped domain binding to HIV RIC3 PF15361.1 gi|57640331|ref|YP_182809.1| - 0.31 11.2 2.5 0.39 10.9 1.7 1.1 1 0 0 1 1 1 0 Resistance to inhibitors of cholinesterase homologue 3 COX16 PF14138.1 gi|57640331|ref|YP_182809.1| - 0.56 10.4 3.0 0.75 10.0 2.1 1.3 1 0 0 1 1 1 0 Cytochrome c oxidase assembly protein COX16 YobH PF13996.1 gi|57640332|ref|YP_182810.1| - 0.042 13.7 1.0 0.077 12.9 0.7 1.4 1 0 0 1 1 1 0 YobH-like protein STAT_alpha PF01017.15 gi|57640332|ref|YP_182810.1| - 0.48 10.1 15.6 0.53 9.9 1.2 3.2 3 0 0 3 3 3 0 STAT protein, all-alpha domain Fib_alpha PF08702.5 gi|57640332|ref|YP_182810.1| - 5 7.2 17.3 8.7 6.4 0.8 3.1 3 0 0 3 3 3 0 Fibrinogen alpha/beta chain family Ribosomal_L38e PF01781.13 gi|57640333|ref|YP_182811.1| - 0.0096 15.6 0.0 0.022 14.5 0.0 1.5 1 0 0 1 1 1 1 Ribosomal L38e protein family DUF553 PF04473.7 gi|57640333|ref|YP_182811.1| - 0.065 12.5 0.0 0.15 11.3 0.0 1.6 1 0 0 1 1 1 0 Transglutaminase-like domain CemA PF03040.9 gi|57640335|ref|YP_182813.1| - 0.24 10.9 1.3 0.3 10.6 0.7 1.3 1 1 0 1 1 1 0 CemA family Antitoxin-MazE PF04014.13 gi|57640337|ref|YP_182815.1| - 0.00077 19.1 0.3 0.04 13.6 0.1 2.4 2 0 0 2 2 2 2 Antidote-toxin recognition MazE ELF PF03317.8 gi|57640338|ref|YP_182816.1| - 0.17 11.1 3.4 0.19 10.9 2.3 1.1 1 0 0 1 1 1 0 ELF protein Cation_ATPase_C PF00689.16 gi|57640338|ref|YP_182816.1| - 0.17 11.4 6.1 0.22 11.0 4.3 1.2 1 0 0 1 1 1 0 Cation transporting ATPase, C-terminus DUF4064 PF13273.1 gi|57640338|ref|YP_182816.1| - 0.28 11.3 10.7 0.24 11.5 3.7 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF4064) Cytochrom_B_C PF00032.12 gi|57640338|ref|YP_182816.1| - 2.5 8.3 7.2 0.64 10.2 2.2 2.0 1 1 1 2 2 2 0 Cytochrome b(C-terminal)/b6/petD TMEM237 PF15383.1 gi|57640338|ref|YP_182816.1| - 3.3 6.7 5.9 0.61 9.1 2.1 1.3 2 0 0 2 2 2 0 Transmembrane protein 237 Antitoxin-MazE PF04014.13 gi|57640340|ref|YP_182818.1| - 4.2e-05 23.1 4.3 0.0048 16.5 0.3 2.5 2 1 0 2 2 2 2 Antidote-toxin recognition MazE UFD1 PF03152.9 gi|57640340|ref|YP_182818.1| - 0.022 13.9 0.0 0.077 12.1 0.0 1.7 1 1 0 1 1 1 0 Ubiquitin fusion degradation protein UFD1 Antitoxin-MazE PF04014.13 gi|57640341|ref|YP_182819.1| - 1e-09 37.8 1.7 0.00012 21.6 0.1 2.5 2 1 0 2 2 2 2 Antidote-toxin recognition MazE B3 PF02362.16 gi|57640341|ref|YP_182819.1| - 0.018 14.6 0.0 4.9 6.8 0.0 2.3 1 1 1 2 2 2 0 B3 DNA binding domain DUF22 PF01629.11 gi|57640341|ref|YP_182819.1| - 0.024 14.1 0.6 0.056 12.9 0.1 1.7 1 1 0 1 1 1 0 Domain of unknown function DUF22 Acetyltransf_7 PF13508.1 gi|57640343|ref|YP_182821.1| - 2.1e-06 27.7 0.2 5.8e-06 26.3 0.1 1.7 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|57640343|ref|YP_182821.1| - 0.077 13.0 0.0 0.13 12.3 0.0 1.5 1 0 0 1 1 1 0 Acetyltransferase (GNAT) family CART PF06373.6 gi|57640343|ref|YP_182821.1| - 0.082 12.8 0.1 0.14 12.0 0.1 1.4 1 0 0 1 1 1 0 Cocaine and amphetamine regulated transcript protein (CART) DUF4292 PF14125.1 gi|57640343|ref|YP_182821.1| - 0.088 12.2 0.0 0.12 11.7 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4292) Antitoxin-MazE PF04014.13 gi|57640344|ref|YP_182822.1| - 2.1e-10 40.0 1.1 5.4e-06 26.0 0.4 2.6 2 0 0 2 2 2 2 Antidote-toxin recognition MazE MraZ PF02381.13 gi|57640344|ref|YP_182822.1| - 1.8e-05 24.4 0.0 0.00067 19.3 0.0 2.1 2 0 0 2 2 2 1 MraZ protein UFD1 PF03152.9 gi|57640344|ref|YP_182822.1| - 0.012 14.7 0.0 0.051 12.7 0.0 1.8 1 1 0 1 1 1 0 Ubiquitin fusion degradation protein UFD1 DUF22 PF01629.11 gi|57640344|ref|YP_182822.1| - 0.091 12.2 0.6 0.61 9.5 0.4 2.1 2 1 0 2 2 2 0 Domain of unknown function DUF22 DUF3781 PF12636.2 gi|57640344|ref|YP_182822.1| - 0.27 11.2 1.6 2.1 8.3 0.2 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3781) DUF2570 PF10828.3 gi|57640345|ref|YP_182823.1| - 0.0005 19.6 1.6 0.001 18.6 1.1 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF2570) Neuropep_like PF15161.1 gi|57640346|ref|YP_182824.1| - 0.033 13.6 0.4 0.13 11.7 0.0 2.0 2 0 0 2 2 2 0 Neuropeptide-like LAGLIDADG_WhiA PF14527.1 gi|57640346|ref|YP_182824.1| - 0.1 12.5 0.2 3.3 7.6 0.1 2.5 1 1 1 2 2 2 0 WhiA LAGLIDADG-like domain Y_Y_Y PF07495.8 gi|57640347|ref|YP_182825.1| - 0.014 15.1 0.2 0.025 14.3 0.1 1.5 1 1 0 1 1 1 0 Y_Y_Y domain Rad60-SLD PF11976.3 gi|57640347|ref|YP_182825.1| - 0.018 14.7 0.1 0.034 13.8 0.0 1.4 1 0 0 1 1 1 0 Ubiquitin-2 like Rad60 SUMO-like AF2331-like PF14556.1 gi|57640348|ref|YP_182826.1| - 0.0021 18.3 1.7 0.017 15.4 0.1 2.4 1 1 1 2 2 2 2 AF2331-like TrmB PF01978.14 gi|57640349|ref|YP_182827.1| - 0.00095 18.8 0.0 0.0012 18.4 0.0 1.1 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB DUF2582 PF10771.4 gi|57640349|ref|YP_182827.1| - 0.0058 16.4 0.0 0.0065 16.3 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2582) HTH_IclR PF09339.5 gi|57640349|ref|YP_182827.1| - 0.017 14.6 0.0 0.021 14.3 0.0 1.2 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|57640349|ref|YP_182827.1| - 0.022 14.1 0.0 0.025 13.9 0.0 1.1 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding PIN_2 PF10130.4 gi|57640349|ref|YP_182827.1| - 0.026 14.5 0.0 0.028 14.4 0.0 1.0 1 0 0 1 1 1 0 PIN domain HTH_9 PF08221.6 gi|57640349|ref|YP_182827.1| - 0.064 13.1 0.0 0.071 12.9 0.0 1.2 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_20 PF12840.2 gi|57640349|ref|YP_182827.1| - 0.086 12.6 0.0 0.1 12.4 0.0 1.1 1 0 0 1 1 1 0 Helix-turn-helix domain LexA_DNA_bind PF01726.11 gi|57640349|ref|YP_182827.1| - 0.12 11.8 0.0 0.15 11.6 0.0 1.2 1 0 0 1 1 1 0 LexA DNA binding domain MarR_2 PF12802.2 gi|57640349|ref|YP_182827.1| - 0.13 11.9 0.0 0.15 11.7 0.0 1.1 1 0 0 1 1 1 0 MarR family RPA_C PF08784.6 gi|57640349|ref|YP_182827.1| - 0.14 12.6 0.0 0.16 12.4 0.0 1.1 1 0 0 1 1 1 0 Replication protein A C terminal NfeD PF01957.13 gi|57640352|ref|YP_182830.1| - 0.085 12.9 2.5 0.12 12.5 1.6 1.3 1 1 0 1 1 1 0 NfeD-like C-terminal, partner-binding DUF3754 PF12576.3 gi|57640352|ref|YP_182830.1| - 0.16 11.6 0.8 0.2 11.2 0.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3754) Chor_lyase PF04345.8 gi|57640353|ref|YP_182831.1| - 0.11 11.8 0.0 0.12 11.7 0.0 1.1 1 0 0 1 1 1 0 Chorismate lyase Pam16 PF03656.8 gi|57640354|ref|YP_182832.1| - 0.0056 16.4 0.0 0.0077 16.0 0.0 1.1 1 0 0 1 1 1 1 Pam16 DUF4378 PF14309.1 gi|57640354|ref|YP_182832.1| - 0.1 12.6 0.2 0.11 12.5 0.2 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4378) CcdA PF07362.7 gi|57640356|ref|YP_182834.1| - 0.042 13.7 0.0 0.065 13.1 0.0 1.2 1 0 0 1 1 1 0 Post-segregation antitoxin CcdA DUF4415 PF14384.1 gi|57640356|ref|YP_182834.1| - 0.088 12.9 0.4 0.24 11.5 0.3 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4415) tRNA_m1G_MT PF01746.16 gi|57640357|ref|YP_182835.1| - 2.7e-22 79.2 0.0 4.1e-22 78.6 0.0 1.3 1 0 0 1 1 1 1 tRNA (Guanine-1)-methyltransferase RNA_Me_trans PF04252.8 gi|57640357|ref|YP_182835.1| - 0.024 14.0 0.1 0.051 12.9 0.1 1.6 1 1 0 1 1 1 0 Predicted SAM-dependent RNA methyltransferase FeoC PF09012.5 gi|57640357|ref|YP_182835.1| - 0.05 13.3 0.0 0.11 12.2 0.0 1.5 1 0 0 1 1 1 0 FeoC like transcriptional regulator Peptidase_S9 PF00326.16 gi|57640358|ref|YP_182836.1| - 6.6e-58 195.4 0.0 9.2e-58 194.9 0.0 1.2 1 0 0 1 1 1 1 Prolyl oligopeptidase family Peptidase_S9_N PF02897.10 gi|57640358|ref|YP_182836.1| - 4.2e-20 71.7 0.0 1.6e-19 69.7 0.0 1.8 1 1 0 1 1 1 1 Prolyl oligopeptidase, N-terminal beta-propeller domain Abhydrolase_5 PF12695.2 gi|57640358|ref|YP_182836.1| - 3.3e-06 26.8 0.0 7.3e-06 25.7 0.0 1.6 1 0 0 1 1 1 1 Alpha/beta hydrolase family Peptidase_S15 PF02129.13 gi|57640358|ref|YP_182836.1| - 0.0061 16.0 0.0 2 7.7 0.0 2.4 1 1 1 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) Thymidylat_synt PF00303.14 gi|57640358|ref|YP_182836.1| - 0.093 11.7 0.0 0.16 10.9 0.0 1.2 1 0 0 1 1 1 0 Thymidylate synthase RibD_C PF01872.12 gi|57640359|ref|YP_182837.1| - 9.9e-36 123.2 0.0 1.4e-35 122.7 0.0 1.2 1 0 0 1 1 1 1 RibD C-terminal domain dCMP_cyt_deam_1 PF00383.17 gi|57640359|ref|YP_182837.1| - 2.1e-26 91.4 0.0 3.6e-26 90.7 0.0 1.3 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region APOBEC_N PF08210.6 gi|57640359|ref|YP_182837.1| - 0.00039 20.0 0.0 0.0076 15.8 0.0 2.1 1 1 0 1 1 1 1 APOBEC-like N-terminal domain MafB19-deam PF14437.1 gi|57640359|ref|YP_182837.1| - 0.003 17.2 0.1 0.0052 16.4 0.0 1.3 1 0 0 1 1 1 1 MafB19-like deaminase Lum_binding PF00677.12 gi|57640360|ref|YP_182838.1| - 9e-31 105.6 0.2 4.4e-17 61.7 0.0 2.6 2 1 0 2 2 2 2 Lumazine binding domain PulG PF11773.3 gi|57640360|ref|YP_182838.1| - 0.13 12.0 0.0 3.9 7.2 0.0 2.2 2 0 0 2 2 2 0 Type II secretory pathway pseudopilin GTP_cyclohydro2 PF00925.15 gi|57640363|ref|YP_182841.1| - 3.5e-68 228.1 0.0 4.8e-68 227.6 0.0 1.2 1 0 0 1 1 1 1 GTP cyclohydrolase II DHBP_synthase PF00926.14 gi|57640363|ref|YP_182841.1| - 1.7e-43 148.1 0.0 2.8e-43 147.3 0.0 1.3 1 0 0 1 1 1 1 3,4-dihydroxy-2-butanone 4-phosphate synthase ADH_zinc_N PF00107.21 gi|57640363|ref|YP_182841.1| - 0.035 13.6 0.0 0.081 12.4 0.0 1.6 1 0 0 1 1 1 0 Zinc-binding dehydrogenase NTP_transf_3 PF12804.2 gi|57640363|ref|YP_182841.1| - 0.06 13.4 0.0 0.12 12.3 0.0 1.5 1 0 0 1 1 1 0 MobA-like NTP transferase domain DMRL_synthase PF00885.14 gi|57640364|ref|YP_182842.1| - 1.2e-53 180.6 0.2 1.4e-53 180.4 0.1 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase IMP_cyclohyd PF07826.6 gi|57640365|ref|YP_182843.1| - 8.3e-46 155.8 0.0 9.3e-46 155.6 0.0 1.0 1 0 0 1 1 1 1 IMP cyclohydrolase-like protein DUF1297 PF06973.7 gi|57640366|ref|YP_182844.1| - 1.9e-49 167.5 0.0 2.5e-49 167.1 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1297) DUF1246 PF06849.7 gi|57640366|ref|YP_182844.1| - 1.6e-33 115.1 0.0 2.8e-33 114.3 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1246) SAICAR_synt PF01259.13 gi|57640367|ref|YP_182845.1| - 3.8e-35 121.1 0.0 4.7e-35 120.8 0.0 1.1 1 0 0 1 1 1 1 SAICAR synthetase DUF2639 PF11121.3 gi|57640367|ref|YP_182845.1| - 0.091 12.2 0.3 3.6 7.1 0.0 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2639) ThiC PF01964.13 gi|57640368|ref|YP_182846.1| - 3.7e-186 618.7 0.2 4.2e-186 618.5 0.1 1.0 1 0 0 1 1 1 1 ThiC family AvrRpt-cleavage PF05627.6 gi|57640368|ref|YP_182846.1| - 0.083 11.9 0.0 0.2 10.7 0.0 1.6 1 0 0 1 1 1 0 Cleavage site for pathogenic type III effector avirulence factor Avr DUF651 PF04895.7 gi|57640368|ref|YP_182846.1| - 0.14 11.7 1.7 2.2 7.9 0.1 2.4 2 0 0 2 2 2 0 Archaeal protein of unknown function (DUF651) Thi4 PF01946.12 gi|57640369|ref|YP_182847.1| - 1.9e-94 315.0 1.5 2.2e-94 314.8 1.0 1.0 1 0 0 1 1 1 1 Thi4 family DAO PF01266.19 gi|57640369|ref|YP_182847.1| - 5.3e-12 45.3 5.9 2.6e-05 23.3 0.0 2.1 1 1 1 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|57640369|ref|YP_182847.1| - 3.8e-10 39.1 7.1 0.00011 21.2 1.6 3.0 3 0 0 3 3 3 2 FAD binding domain FAD_oxidored PF12831.2 gi|57640369|ref|YP_182847.1| - 5.8e-09 35.5 1.8 7.4e-09 35.1 1.2 1.1 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|57640369|ref|YP_182847.1| - 2e-08 34.1 1.4 5.5e-08 32.7 1.0 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.1 gi|57640369|ref|YP_182847.1| - 9.1e-06 25.8 1.6 2.3e-05 24.5 1.1 1.8 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.9 gi|57640369|ref|YP_182847.1| - 5.4e-05 23.1 0.3 7e-05 22.7 0.2 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|57640369|ref|YP_182847.1| - 7.2e-05 21.4 2.5 9.3e-05 21.0 1.6 1.4 1 1 0 1 1 1 1 HI0933-like protein FAD_binding_3 PF01494.14 gi|57640369|ref|YP_182847.1| - 8.5e-05 21.7 0.7 0.00067 18.8 0.4 2.0 2 0 0 2 2 2 1 FAD binding domain Trp_halogenase PF04820.9 gi|57640369|ref|YP_182847.1| - 0.0074 14.9 2.0 0.51 8.9 0.0 2.1 2 0 0 2 2 2 2 Tryptophan halogenase GIDA PF01134.17 gi|57640369|ref|YP_182847.1| - 0.013 14.4 2.4 0.013 14.4 1.7 1.5 2 0 0 2 2 2 0 Glucose inhibited division protein A Pyr_redox PF00070.22 gi|57640369|ref|YP_182847.1| - 0.049 14.0 2.3 0.074 13.4 0.6 2.1 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.1 gi|57640369|ref|YP_182847.1| - 0.05 13.3 3.5 0.12 12.1 0.8 2.3 3 0 0 3 3 3 0 FAD-NAD(P)-binding Phos_pyr_kin PF08543.7 gi|57640370|ref|YP_182848.1| - 7.1e-71 238.2 0.0 9.7e-71 237.8 0.0 1.2 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase Aldolase_2 PF10120.4 gi|57640370|ref|YP_182848.1| - 1.6e-58 196.8 0.1 3.2e-58 195.8 0.1 1.5 1 0 0 1 1 1 1 Putative aldolase PfkB PF00294.19 gi|57640370|ref|YP_182848.1| - 5.1e-06 25.8 0.1 2.8e-05 23.3 0.1 1.9 2 0 0 2 2 2 1 pfkB family carbohydrate kinase Carb_kinase PF01256.12 gi|57640370|ref|YP_182848.1| - 0.0032 16.7 0.1 0.0049 16.1 0.0 1.3 1 0 0 1 1 1 1 Carbohydrate kinase ABC_tran PF00005.22 gi|57640371|ref|YP_182849.1| - 7.8e-19 68.3 0.0 2.1e-18 66.9 0.0 1.8 1 1 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|57640371|ref|YP_182849.1| - 4.1e-11 43.3 0.0 3.3e-05 23.9 0.0 2.7 2 0 0 2 2 2 2 AAA domain Acetyltransf_1 PF00583.19 gi|57640371|ref|YP_182849.1| - 4.1e-07 29.9 0.1 5.2e-06 26.4 0.0 2.5 1 1 1 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|57640371|ref|YP_182849.1| - 6.6e-06 26.1 0.1 5.6e-05 23.2 0.0 2.4 1 1 1 2 2 2 1 Acetyltransferase (GNAT) domain AAA_22 PF13401.1 gi|57640371|ref|YP_182849.1| - 1.7e-05 24.9 0.0 5.3e-05 23.3 0.0 1.9 2 0 0 2 2 1 1 AAA domain SMC_N PF02463.14 gi|57640371|ref|YP_182849.1| - 0.00013 21.2 0.0 0.00061 19.0 0.0 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_10 PF12846.2 gi|57640371|ref|YP_182849.1| - 0.00018 21.0 1.2 0.34 10.3 0.1 2.5 3 0 0 3 3 2 2 AAA-like domain AAA_16 PF13191.1 gi|57640371|ref|YP_182849.1| - 0.0011 18.9 0.4 0.0032 17.4 0.3 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_25 PF13481.1 gi|57640371|ref|YP_182849.1| - 0.0014 18.0 1.5 0.0061 15.9 1.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|57640371|ref|YP_182849.1| - 0.0016 18.8 0.7 0.0052 17.1 0.0 2.1 2 1 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|57640371|ref|YP_182849.1| - 0.0017 19.1 3.8 0.023 15.4 0.0 3.5 3 1 0 3 3 2 1 AAA domain AAA_15 PF13175.1 gi|57640371|ref|YP_182849.1| - 0.0036 16.3 0.1 1.4 7.9 0.0 2.7 3 0 0 3 3 3 1 AAA ATPase domain GNAT_acetyltr_2 PF13718.1 gi|57640371|ref|YP_182849.1| - 0.0038 16.5 0.0 0.0068 15.7 0.0 1.3 1 0 0 1 1 1 1 GNAT acetyltransferase 2 FR47 PF08445.5 gi|57640371|ref|YP_182849.1| - 0.0039 16.9 0.2 0.3 10.8 0.0 2.8 2 1 0 2 2 2 1 FR47-like protein DUF258 PF03193.11 gi|57640371|ref|YP_182849.1| - 0.011 14.9 0.0 0.018 14.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 FtsK_SpoIIIE PF01580.13 gi|57640371|ref|YP_182849.1| - 0.011 15.1 0.4 0.23 10.9 0.0 2.5 2 0 0 2 2 2 0 FtsK/SpoIIIE family NACHT PF05729.7 gi|57640371|ref|YP_182849.1| - 0.025 14.2 0.3 0.09 12.4 0.0 1.9 2 0 0 2 2 2 0 NACHT domain AAA_29 PF13555.1 gi|57640371|ref|YP_182849.1| - 0.026 14.0 0.0 0.071 12.6 0.0 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain Acetyltransf_9 PF13527.1 gi|57640371|ref|YP_182849.1| - 0.026 14.3 0.1 0.32 10.8 0.0 2.4 2 1 0 2 2 2 0 Acetyltransferase (GNAT) domain AAA_19 PF13245.1 gi|57640371|ref|YP_182849.1| - 0.042 13.6 0.0 0.69 9.7 0.0 2.8 3 0 0 3 3 2 0 Part of AAA domain MobB PF03205.9 gi|57640371|ref|YP_182849.1| - 0.047 13.3 0.0 0.13 12.0 0.0 1.7 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_33 PF13671.1 gi|57640371|ref|YP_182849.1| - 0.052 13.4 0.0 0.17 11.7 0.0 1.9 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|57640371|ref|YP_182849.1| - 0.062 13.2 0.1 0.22 11.4 0.0 2.0 1 0 0 1 1 1 0 AAA domain UPF0079 PF02367.12 gi|57640371|ref|YP_182849.1| - 0.069 12.7 0.0 0.18 11.4 0.0 1.7 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 MMR_HSR1 PF01926.18 gi|57640371|ref|YP_182849.1| - 0.086 12.8 0.0 0.17 11.8 0.0 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase DNA_ligase_ZBD PF03119.11 gi|57640371|ref|YP_182849.1| - 0.1 12.3 1.2 3.8 7.2 0.6 2.5 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Miro PF08477.8 gi|57640371|ref|YP_182849.1| - 0.12 12.9 0.0 0.43 11.0 0.0 2.0 2 0 0 2 2 1 0 Miro-like protein AAA_30 PF13604.1 gi|57640371|ref|YP_182849.1| - 0.12 11.9 1.2 0.68 9.4 0.8 2.0 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|57640371|ref|YP_182849.1| - 0.13 12.5 1.4 0.26 11.5 0.1 2.3 2 1 0 2 2 1 0 AAA domain KaiC PF06745.8 gi|57640371|ref|YP_182849.1| - 0.15 11.1 0.2 18 4.3 0.0 2.9 4 0 0 4 4 4 0 KaiC cobW PF02492.14 gi|57640371|ref|YP_182849.1| - 0.19 11.1 0.1 0.32 10.4 0.0 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain DUF3584 PF12128.3 gi|57640371|ref|YP_182849.1| - 0.2 8.9 0.0 0.3 8.3 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) Dynamin_N PF00350.18 gi|57640371|ref|YP_182849.1| - 0.23 11.2 0.0 0.45 10.3 0.0 1.5 1 0 0 1 1 1 0 Dynamin family DUF4379 PF14311.1 gi|57640371|ref|YP_182849.1| - 0.27 11.0 1.5 0.78 9.5 1.0 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4379) Phospholip_B PF04916.8 gi|57640372|ref|YP_182850.1| - 0.11 10.6 0.0 0.17 9.9 0.0 1.2 1 0 0 1 1 1 0 Phospholipase B Abi PF02517.11 gi|57640374|ref|YP_182852.1| - 2.7e-09 37.0 7.3 7.2e-09 35.6 5.0 1.9 1 1 0 1 1 1 1 CAAX protease self-immunity FKBP_C PF00254.23 gi|57640376|ref|YP_182854.1| - 2.7e-16 59.3 0.4 6.9e-16 58.0 0.3 1.8 1 0 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase Asp-B-Hydro_N PF05279.6 gi|57640376|ref|YP_182854.1| - 2.7 7.7 36.2 3.8 7.3 25.1 1.2 1 0 0 1 1 1 0 Aspartyl beta-hydroxylase N-terminal region Hid1 PF12722.2 gi|57640376|ref|YP_182854.1| - 5.1 4.6 14.7 6.4 4.3 10.2 1.0 1 0 0 1 1 1 0 High-temperature-induced dauer-formation protein COX17 PF05051.8 gi|57640377|ref|YP_182855.1| - 0.089 12.8 1.6 0.15 12.0 1.1 1.3 1 0 0 1 1 1 0 Cytochrome C oxidase copper chaperone (COX17) tRNA-synt_1e PF01406.14 gi|57640379|ref|YP_182857.1| - 2.2e-137 457.1 0.0 3.3e-137 456.5 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1g PF09334.6 gi|57640379|ref|YP_182857.1| - 8e-24 84.0 1.0 4.7e-13 48.5 0.4 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (M) DALR_2 PF09190.6 gi|57640379|ref|YP_182857.1| - 9e-17 61.0 0.4 3.1e-16 59.3 0.1 2.1 2 0 0 2 2 2 1 DALR domain tRNA-synt_1f PF01921.13 gi|57640379|ref|YP_182857.1| - 2e-08 33.3 0.2 2.2e-05 23.3 0.0 2.8 2 1 0 3 3 3 2 tRNA synthetases class I (K) tRNA-synt_1 PF00133.17 gi|57640379|ref|YP_182857.1| - 1e-07 30.3 0.0 0.00014 20.0 0.0 2.4 2 0 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1d PF00750.14 gi|57640379|ref|YP_182857.1| - 0.00061 18.7 0.1 0.058 12.2 0.0 2.8 3 0 0 3 3 3 1 tRNA synthetases class I (R) THOC7 PF05615.8 gi|57640379|ref|YP_182857.1| - 0.021 15.0 0.4 0.051 13.8 0.1 1.8 1 1 0 1 1 1 0 Tho complex subunit 7 MutL_C PF08676.6 gi|57640379|ref|YP_182857.1| - 0.031 13.8 0.1 0.077 12.5 0.0 1.6 1 0 0 1 1 1 0 MutL C terminal dimerisation domain tRNA-synt_1c PF00749.16 gi|57640379|ref|YP_182857.1| - 0.051 12.2 1.0 0.35 9.4 0.7 2.3 1 1 0 1 1 1 0 tRNA synthetases class I (E and Q), catalytic domain CRISPR_Cas2 PF09827.4 gi|57640380|ref|YP_182858.1| - 1.8e-23 82.4 0.1 2e-23 82.2 0.1 1.0 1 0 0 1 1 1 1 CRISPR associated protein Cas2 PDDEXK_1 PF12705.2 gi|57640381|ref|YP_182859.1| - 2.3e-07 30.4 0.0 1.9e-05 24.2 0.0 2.2 1 1 1 2 2 2 2 PD-(D/E)XK nuclease superfamily Cas_Cas6 PF01881.11 gi|57640382|ref|YP_182860.1| - 6.1e-23 81.7 0.0 1e-22 81.0 0.0 1.4 1 0 0 1 1 1 1 CRISPR associated protein Cas6 HTH_23 PF13384.1 gi|57640383|ref|YP_182861.1| - 9.9e-08 31.4 0.0 2e-07 30.4 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_38 PF13936.1 gi|57640383|ref|YP_182861.1| - 1.2e-07 31.1 0.1 4.9e-07 29.2 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_27 PF13463.1 gi|57640383|ref|YP_182861.1| - 1e-06 28.9 0.1 2.7e-05 24.4 0.0 2.4 2 0 0 2 2 2 1 Winged helix DNA-binding domain Fe_dep_repress PF01325.14 gi|57640383|ref|YP_182861.1| - 3e-06 27.0 0.1 5.4e-06 26.2 0.1 1.3 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain TrmB PF01978.14 gi|57640383|ref|YP_182861.1| - 2.3e-05 23.9 0.1 4.5e-05 23.0 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|57640383|ref|YP_182861.1| - 3.4e-05 23.4 0.0 9.5e-05 21.9 0.0 1.8 2 0 0 2 2 1 1 MarR family HTH_24 PF13412.1 gi|57640383|ref|YP_182861.1| - 5.5e-05 22.4 0.1 0.00013 21.3 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding GerE PF00196.14 gi|57640383|ref|YP_182861.1| - 6.3e-05 22.2 0.0 0.00012 21.3 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_28 PF13518.1 gi|57640383|ref|YP_182861.1| - 6.5e-05 22.8 0.0 0.00014 21.7 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|57640383|ref|YP_182861.1| - 7.3e-05 22.3 0.2 0.0002 20.9 0.0 1.8 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_11 PF08279.7 gi|57640383|ref|YP_182861.1| - 0.001 18.6 0.0 0.0037 16.8 0.0 1.9 2 0 0 2 2 1 1 HTH domain HTH_20 PF12840.2 gi|57640383|ref|YP_182861.1| - 0.0014 18.4 0.0 0.0026 17.5 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|57640383|ref|YP_182861.1| - 0.005 16.2 0.0 0.021 14.2 0.0 1.9 2 0 0 2 2 2 1 Sigma-70, region 4 MarR PF01047.17 gi|57640383|ref|YP_182861.1| - 0.0089 15.7 0.0 0.017 14.7 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_29 PF13551.1 gi|57640383|ref|YP_182861.1| - 0.013 15.6 0.0 0.025 14.7 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix HTH_DeoR PF08220.7 gi|57640383|ref|YP_182861.1| - 0.013 14.9 0.0 0.026 14.0 0.0 1.4 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_34 PF13601.1 gi|57640383|ref|YP_182861.1| - 0.019 14.9 0.1 0.046 13.7 0.1 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain HxlR PF01638.12 gi|57640383|ref|YP_182861.1| - 0.043 13.4 0.0 0.11 12.0 0.0 1.6 1 0 0 1 1 1 0 HxlR-like helix-turn-helix HTH_40 PF14493.1 gi|57640383|ref|YP_182861.1| - 0.044 13.9 0.0 0.23 11.6 0.0 2.0 2 1 0 2 2 2 0 Helix-turn-helix domain HTH_10 PF04967.7 gi|57640383|ref|YP_182861.1| - 0.053 13.1 0.0 0.11 12.0 0.0 1.5 1 0 0 1 1 1 0 HTH DNA binding domain LexA_DNA_bind PF01726.11 gi|57640383|ref|YP_182861.1| - 0.06 12.9 0.0 0.13 11.8 0.0 1.5 1 0 0 1 1 1 0 LexA DNA binding domain Trp_repressor PF01371.14 gi|57640383|ref|YP_182861.1| - 0.062 13.2 0.0 0.14 12.0 0.0 1.6 1 0 0 1 1 1 0 Trp repressor protein HTH_Crp_2 PF13545.1 gi|57640383|ref|YP_182861.1| - 0.075 12.8 0.0 0.16 11.7 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Rrf2 PF02082.15 gi|57640383|ref|YP_182861.1| - 0.094 12.8 0.0 0.19 11.8 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator HTH_Tnp_1 PF01527.15 gi|57640383|ref|YP_182861.1| - 0.11 12.4 0.0 0.23 11.4 0.0 1.5 1 0 0 1 1 1 0 Transposase PadR PF03551.9 gi|57640383|ref|YP_182861.1| - 0.11 12.2 0.1 0.33 10.7 0.1 1.7 2 0 0 2 2 2 0 Transcriptional regulator PadR-like family GntR PF00392.16 gi|57640383|ref|YP_182861.1| - 0.12 11.8 0.1 0.41 10.1 0.0 1.9 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family HD PF01966.17 gi|57640384|ref|YP_182862.1| - 2.6e-14 53.2 0.1 3.9e-14 52.7 0.1 1.3 1 0 0 1 1 1 1 HD domain DEAD PF00270.24 gi|57640385|ref|YP_182863.1| - 3.4e-11 42.9 0.1 2e-10 40.4 0.0 2.2 1 1 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|57640385|ref|YP_182863.1| - 3.2e-07 30.1 0.1 1.1e-06 28.3 0.0 1.9 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|57640385|ref|YP_182863.1| - 1.1e-06 28.6 0.0 5e-06 26.4 0.0 2.0 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_22 PF13401.1 gi|57640385|ref|YP_182863.1| - 0.0019 18.3 0.0 0.082 13.0 0.0 3.2 2 1 0 2 2 2 1 AAA domain IstB_IS21 PF01695.12 gi|57640385|ref|YP_182863.1| - 0.0048 16.3 0.0 0.61 9.4 0.0 2.9 3 0 0 3 3 3 1 IstB-like ATP binding protein PhoH PF02562.11 gi|57640385|ref|YP_182863.1| - 0.0049 16.1 0.0 0.012 14.8 0.0 1.6 2 0 0 2 2 2 1 PhoH-like protein AAA PF00004.24 gi|57640385|ref|YP_182863.1| - 0.013 15.6 0.1 8.4 6.6 0.0 3.7 4 0 0 4 4 4 0 ATPase family associated with various cellular activities (AAA) Arch_ATPase PF01637.13 gi|57640385|ref|YP_182863.1| - 0.02 14.5 0.0 0.05 13.2 0.0 1.6 1 0 0 1 1 1 0 Archaeal ATPase AAA_19 PF13245.1 gi|57640385|ref|YP_182863.1| - 0.042 13.5 0.0 0.19 11.4 0.0 2.0 2 0 0 2 2 2 0 Part of AAA domain XylR_N PF06505.6 gi|57640385|ref|YP_182863.1| - 0.06 12.7 0.0 0.14 11.6 0.0 1.5 1 0 0 1 1 1 0 Activator of aromatic catabolism AAA_10 PF12846.2 gi|57640385|ref|YP_182863.1| - 0.11 11.9 0.0 0.2 11.0 0.0 1.4 1 0 0 1 1 1 0 AAA-like domain Cas_Csx9 PF09658.5 gi|57640386|ref|YP_182864.1| - 1.2e-235 781.3 0.2 1.3e-235 781.1 0.1 1.0 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Csx9) Cas_Cas5d PF09704.5 gi|57640387|ref|YP_182865.1| - 1.7e-14 54.0 0.0 2e-14 53.7 0.0 1.0 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Cas5) DevR PF01905.11 gi|57640388|ref|YP_182866.1| - 6e-79 264.6 0.1 8e-76 254.4 0.0 2.1 1 1 0 1 1 1 1 CRISPR-associated negative auto-regulator DevR/Csa2 DUF4200 PF13863.1 gi|57640388|ref|YP_182866.1| - 0.0084 16.0 1.0 0.0084 16.0 0.7 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF4200) IL7 PF01415.11 gi|57640388|ref|YP_182866.1| - 0.054 13.1 0.2 0.14 11.8 0.1 1.6 2 0 0 2 2 2 0 Interleukin 7/9 family Cas_Csa5 PF09702.5 gi|57640389|ref|YP_182867.1| - 1.8e-37 127.5 0.0 2.3e-37 127.2 0.0 1.1 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Csa5) Cas_Cas1 PF01867.11 gi|57640390|ref|YP_182868.1| - 3.6e-80 269.0 0.2 4.2e-80 268.8 0.1 1.0 1 0 0 1 1 1 1 CRISPR associated protein Cas1 PIN PF01850.16 gi|57640391|ref|YP_182869.1| - 9.9e-20 71.0 0.2 1.1e-19 70.9 0.1 1.0 1 0 0 1 1 1 1 PIN domain Antitoxin-MazE PF04014.13 gi|57640392|ref|YP_182870.1| - 2.5e-14 52.6 0.8 3.3e-14 52.2 0.5 1.2 1 0 0 1 1 1 1 Antidote-toxin recognition MazE DUF1905 PF08922.6 gi|57640392|ref|YP_182870.1| - 0.036 13.6 0.0 0.055 13.0 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1905) CTDII PF01556.13 gi|57640392|ref|YP_182870.1| - 0.11 12.3 0.1 0.18 11.7 0.1 1.3 1 0 0 1 1 1 0 DnaJ C terminal domain Leucyl-specific PF14795.1 gi|57640392|ref|YP_182870.1| - 0.14 12.0 4.7 7.2 6.5 2.2 2.1 1 1 1 2 2 2 0 Leucine-tRNA synthetase-specific domain Skp1 PF01466.14 gi|57640392|ref|YP_182870.1| - 0.14 12.2 1.6 5.6 7.0 0.2 2.1 1 1 1 2 2 2 0 Skp1 family, dimerisation domain Cas_Cas4 PF01930.12 gi|57640393|ref|YP_182871.1| - 1.2e-53 181.3 2.3 1.4e-53 181.1 1.6 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF83 PDDEXK_1 PF12705.2 gi|57640393|ref|YP_182871.1| - 4.8e-07 29.4 1.3 7e-07 28.8 0.8 1.4 1 1 0 1 1 1 1 PD-(D/E)XK nuclease superfamily SfsA PF03749.8 gi|57640393|ref|YP_182871.1| - 0.025 14.0 0.2 0.035 13.5 0.2 1.2 1 0 0 1 1 1 0 Sugar fermentation stimulation protein Arch_ATPase PF01637.13 gi|57640394|ref|YP_182872.1| - 7.5e-23 81.4 4.5 7.5e-23 81.4 3.1 1.5 2 0 0 2 2 2 1 Archaeal ATPase AAA_35 PF14516.1 gi|57640394|ref|YP_182872.1| - 4.2e-10 38.7 0.2 3.5e-09 35.7 0.1 2.0 1 1 0 1 1 1 1 AAA-like domain AAA_14 PF13173.1 gi|57640394|ref|YP_182872.1| - 1.9e-06 27.8 0.1 0.0011 18.8 0.1 2.5 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|57640394|ref|YP_182872.1| - 2.5e-06 27.6 0.0 4.2e-06 26.8 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain RNA12 PF10443.4 gi|57640394|ref|YP_182872.1| - 1.3e-05 23.9 0.0 0.091 11.2 0.0 2.3 1 1 1 2 2 2 2 RNA12 protein AAA-ATPase_like PF09820.4 gi|57640394|ref|YP_182872.1| - 0.0017 17.5 1.9 0.0063 15.7 0.4 2.3 2 1 0 2 2 2 1 Predicted AAA-ATPase MarR_2 PF12802.2 gi|57640394|ref|YP_182872.1| - 0.0059 16.2 0.0 0.011 15.3 0.0 1.4 1 0 0 1 1 1 1 MarR family AAA PF00004.24 gi|57640394|ref|YP_182872.1| - 0.039 14.1 0.2 0.13 12.4 0.1 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) LexA_DNA_bind PF01726.11 gi|57640394|ref|YP_182872.1| - 0.14 11.7 0.0 0.41 10.2 0.0 1.8 1 0 0 1 1 1 0 LexA DNA binding domain PfkB PF00294.19 gi|57640394|ref|YP_182872.1| - 0.2 10.7 0.0 0.36 9.9 0.0 1.3 1 0 0 1 1 1 0 pfkB family carbohydrate kinase DEAD PF00270.24 gi|57640395|ref|YP_182873.1| - 1.7e-14 53.6 0.0 1.3e-13 50.7 0.0 2.1 2 0 0 2 2 2 1 DEAD/DEAH box helicase HD PF01966.17 gi|57640395|ref|YP_182873.1| - 0.00025 21.0 0.1 0.00064 19.7 0.0 1.7 1 0 0 1 1 1 1 HD domain Helicase_C PF00271.26 gi|57640395|ref|YP_182873.1| - 0.00052 19.8 0.0 0.0013 18.5 0.0 1.7 1 0 0 1 1 1 1 Helicase conserved C-terminal domain AAA_22 PF13401.1 gi|57640395|ref|YP_182873.1| - 0.027 14.5 0.0 0.13 12.3 0.0 2.1 1 1 0 1 1 1 0 AAA domain AAA PF00004.24 gi|57640395|ref|YP_182873.1| - 0.074 13.2 0.1 1.6 8.9 0.0 2.6 3 0 0 3 3 3 0 ATPase family associated with various cellular activities (AAA) ResIII PF04851.10 gi|57640395|ref|YP_182873.1| - 0.074 12.8 0.0 0.68 9.7 0.0 2.2 1 1 0 1 1 1 0 Type III restriction enzyme, res subunit Cas_Cas5d PF09704.5 gi|57640396|ref|YP_182874.1| - 1.8e-08 34.3 1.1 6.5e-07 29.1 0.8 2.2 1 1 0 1 1 1 1 CRISPR-associated protein (Cas_Cas5) DevR PF01905.11 gi|57640397|ref|YP_182875.1| - 5.4e-17 61.5 0.0 5.6e-16 58.1 0.0 2.0 1 1 0 1 1 1 1 CRISPR-associated negative auto-regulator DevR/Csa2 BEX PF04538.7 gi|57640397|ref|YP_182875.1| - 0.028 14.6 1.1 0.053 13.7 0.8 1.4 1 0 0 1 1 1 0 Brain expressed X-linked like family Cas_CXXC_CXXC PF09706.5 gi|57640398|ref|YP_182876.1| - 2.3e-16 59.7 0.0 4.7e-16 58.7 0.0 1.6 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_CXXC_CXXC) Cas_Cas6 PF01881.11 gi|57640399|ref|YP_182877.1| - 3.8e-42 144.1 0.0 4.9e-42 143.7 0.0 1.1 1 0 0 1 1 1 1 CRISPR associated protein Cas6 ATP-grasp_5 PF13549.1 gi|57640400|ref|YP_182878.1| - 2.4e-84 282.0 0.2 2.9e-84 281.7 0.1 1.0 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_2 PF08442.5 gi|57640400|ref|YP_182878.1| - 7.5e-09 35.2 0.2 1.2e-08 34.5 0.1 1.5 1 1 0 1 1 1 1 ATP-grasp domain ATP-grasp_4 PF13535.1 gi|57640400|ref|YP_182878.1| - 3.5e-06 26.8 0.0 5.7e-06 26.1 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain RimK PF08443.6 gi|57640400|ref|YP_182878.1| - 8.6e-05 22.0 0.1 0.00041 19.8 0.0 2.1 2 0 0 2 2 2 1 RimK-like ATP-grasp domain CPSase_L_D2 PF02786.12 gi|57640400|ref|YP_182878.1| - 0.00046 19.5 0.1 0.0011 18.2 0.1 1.7 1 1 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain GARS_A PF01071.14 gi|57640400|ref|YP_182878.1| - 0.00056 19.5 0.0 0.0011 18.6 0.0 1.4 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATP-grasp PF02222.17 gi|57640400|ref|YP_182878.1| - 0.00061 19.1 0.0 0.00089 18.6 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain Glutaredoxin PF00462.19 gi|57640400|ref|YP_182878.1| - 0.07 13.1 0.3 26 4.8 0.0 3.3 3 0 0 3 3 3 0 Glutaredoxin Fer4_NifH PF00142.13 gi|57640400|ref|YP_182878.1| - 0.09 11.9 0.1 0.15 11.2 0.0 1.3 1 0 0 1 1 1 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family DUF4139 PF13598.1 gi|57640401|ref|YP_182879.1| - 0.00015 21.2 0.4 0.0013 18.1 0.1 2.4 2 1 0 2 2 2 1 Domain of unknown function (DUF4139) DUF3888 PF13027.1 gi|57640401|ref|YP_182879.1| - 0.056 13.3 0.4 0.27 11.0 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3888) Ctf8 PF09696.5 gi|57640401|ref|YP_182879.1| - 0.11 12.2 0.0 2.9 7.6 0.0 2.3 2 0 0 2 2 2 0 Ctf8 Lectin_legB PF00139.14 gi|57640402|ref|YP_182880.1| - 9.1e-06 25.2 0.0 0.0025 17.2 0.0 2.6 2 0 0 2 2 2 2 Legume lectin domain Lectin_leg-like PF03388.8 gi|57640402|ref|YP_182880.1| - 9.7e-05 21.5 0.1 0.0099 15.0 0.0 2.3 2 0 0 2 2 2 2 Legume-like lectin family Syntaxin-6_N PF09177.6 gi|57640402|ref|YP_182880.1| - 0.0075 16.6 0.2 0.0075 16.6 0.1 3.3 2 1 1 3 3 3 1 Syntaxin 6, N-terminal Reo_sigmaC PF04582.7 gi|57640402|ref|YP_182880.1| - 0.011 14.9 10.5 0.12 11.5 0.3 2.5 1 1 1 2 2 2 0 Reovirus sigma C capsid protein Mucin PF01456.12 gi|57640402|ref|YP_182880.1| - 2.9 7.6 10.1 7.4 6.3 7.0 1.6 1 0 0 1 1 1 0 Mucin-like glycoprotein SWIM PF04434.12 gi|57640404|ref|YP_182882.1| - 0.011 15.2 0.1 0.017 14.5 0.1 1.4 1 0 0 1 1 1 0 SWIM zinc finger Apt1 PF10351.4 gi|57640404|ref|YP_182882.1| - 0.12 11.2 0.0 0.14 11.0 0.0 1.1 1 0 0 1 1 1 0 Golgi-body localisation protein domain Topoisom_bac PF01131.15 gi|57640405|ref|YP_182883.1| - 9.3e-91 304.6 1.7 1.8e-58 198.2 1.0 2.4 2 0 0 2 2 2 2 DNA topoisomerase Toprim PF01751.17 gi|57640405|ref|YP_182883.1| - 5.3e-26 90.5 0.0 2.5e-25 88.3 0.0 2.3 1 0 0 1 1 1 1 Toprim domain DEAD PF00270.24 gi|57640405|ref|YP_182883.1| - 3.3e-13 49.4 0.0 1e-12 47.8 0.0 1.8 2 0 0 2 2 1 1 DEAD/DEAH box helicase LAGLIDADG_3 PF14528.1 gi|57640405|ref|YP_182883.1| - 3.1e-10 40.1 0.8 1.8e-09 37.6 0.1 2.7 2 0 0 2 2 2 1 LAGLIDADG-like domain Helicase_C PF00271.26 gi|57640405|ref|YP_182883.1| - 2.9e-06 27.0 0.1 0.019 14.8 0.0 3.7 3 0 0 3 3 3 1 Helicase conserved C-terminal domain Intein_splicing PF14890.1 gi|57640405|ref|YP_182883.1| - 1.2e-05 24.3 0.1 0.00041 19.3 0.0 2.5 2 0 0 2 2 2 1 Intein splicing domain LAGLIDADG_1 PF00961.14 gi|57640405|ref|YP_182883.1| - 8e-05 23.1 0.1 0.00045 20.7 0.0 2.4 2 0 0 2 2 1 1 LAGLIDADG endonuclease AAA_25 PF13481.1 gi|57640405|ref|YP_182883.1| - 0.00057 19.3 1.0 0.0063 15.9 0.0 3.0 3 0 0 3 3 3 1 AAA domain AAA_10 PF12846.2 gi|57640405|ref|YP_182883.1| - 0.004 16.6 0.0 2.6 7.4 0.0 3.6 3 1 0 3 3 3 1 AAA-like domain AAA_22 PF13401.1 gi|57640405|ref|YP_182883.1| - 0.0056 16.8 0.0 0.12 12.4 0.0 3.0 2 0 0 2 2 2 1 AAA domain Toprim_4 PF13662.1 gi|57640405|ref|YP_182883.1| - 0.017 15.1 0.0 0.061 13.3 0.0 1.9 1 0 0 1 1 1 0 Toprim domain OrfB_Zn_ribbon PF07282.6 gi|57640405|ref|YP_182883.1| - 0.027 14.1 2.7 0.16 11.6 0.1 2.5 2 0 0 2 2 2 0 Putative transposase DNA-binding domain HypA PF01155.14 gi|57640405|ref|YP_182883.1| - 0.027 14.1 1.8 0.035 13.7 0.0 2.0 2 0 0 2 2 2 0 Hydrogenase expression/synthesis hypA family zf-FPG_IleRS PF06827.9 gi|57640405|ref|YP_182883.1| - 0.039 13.5 5.5 0.31 10.7 1.1 2.6 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS FYDLN_acid PF09538.5 gi|57640405|ref|YP_182883.1| - 0.12 13.0 0.0 0.28 11.8 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (FYDLN_acid) DZR PF12773.2 gi|57640405|ref|YP_182883.1| - 0.25 11.2 3.9 0.47 10.3 0.2 2.2 2 0 0 2 2 2 0 Double zinc ribbon DUF35_N PF12172.3 gi|57640405|ref|YP_182883.1| - 0.34 10.8 6.9 0.2 11.6 1.4 2.4 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Mid1 PF12929.2 gi|57640405|ref|YP_182883.1| - 0.4 9.3 0.0 0.74 8.4 0.0 1.3 1 0 0 1 1 1 0 Stretch-activated Ca2+-permeable channel component Zn-ribbon_8 PF09723.5 gi|57640405|ref|YP_182883.1| - 0.55 10.2 6.6 0.03 14.2 0.4 2.1 2 0 0 2 2 1 0 Zinc ribbon domain A2L_zn_ribbon PF08792.5 gi|57640405|ref|YP_182883.1| - 0.93 9.0 1.4 2.1 7.9 1.0 1.6 1 0 0 1 1 1 0 A2L zinc ribbon domain Prok-RING_1 PF14446.1 gi|57640405|ref|YP_182883.1| - 3.3 7.5 6.7 0.39 10.4 0.8 2.1 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 TrmB PF01978.14 gi|57640406|ref|YP_182884.1| - 1.2e-18 66.5 0.0 2.5e-18 65.5 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Regulator_TrmB PF11495.3 gi|57640406|ref|YP_182884.1| - 2.3e-05 23.5 0.3 3.2e-05 23.0 0.2 1.2 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB PP2C_C PF07830.8 gi|57640406|ref|YP_182884.1| - 0.074 13.1 0.5 0.25 11.4 0.3 1.9 2 0 0 2 2 2 0 Protein serine/threonine phosphatase 2C, C-terminal domain DUF1828 PF08861.5 gi|57640406|ref|YP_182884.1| - 0.13 11.9 0.1 0.3 10.7 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function DUF1828 PLDc_2 PF13091.1 gi|57640406|ref|YP_182884.1| - 0.55 9.9 2.2 2.9 7.6 1.5 2.1 1 1 0 1 1 1 0 PLD-like domain HTH_24 PF13412.1 gi|57640407|ref|YP_182885.1| - 7.8e-06 25.1 0.0 1e-05 24.8 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|57640407|ref|YP_182885.1| - 1.7e-05 24.4 0.1 1.9e-05 24.2 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.15 gi|57640407|ref|YP_182885.1| - 1.9e-05 24.1 0.0 2.3e-05 23.9 0.0 1.1 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_29 PF13551.1 gi|57640407|ref|YP_182885.1| - 2.7e-05 24.2 0.0 2.8e-05 24.2 0.0 1.1 1 0 0 1 1 1 1 Winged helix-turn helix HTH_23 PF13384.1 gi|57640407|ref|YP_182885.1| - 5.8e-05 22.5 0.0 7.8e-05 22.1 0.0 1.2 1 0 0 1 1 1 1 Homeodomain-like domain HTH_Tnp_ISL3 PF13542.1 gi|57640407|ref|YP_182885.1| - 6.9e-05 21.9 0.0 9e-05 21.5 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 FaeA PF04703.7 gi|57640407|ref|YP_182885.1| - 8e-05 22.7 0.0 9.5e-05 22.4 0.0 1.2 1 0 0 1 1 1 1 FaeA-like protein HTH_IclR PF09339.5 gi|57640407|ref|YP_182885.1| - 0.00014 21.4 0.0 0.00016 21.1 0.0 1.1 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_7 PF02796.10 gi|57640407|ref|YP_182885.1| - 0.00015 21.5 0.0 0.0002 21.1 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase MarR_2 PF12802.2 gi|57640407|ref|YP_182885.1| - 0.00018 21.0 0.0 0.00021 20.9 0.0 1.1 1 0 0 1 1 1 1 MarR family HTH_40 PF14493.1 gi|57640407|ref|YP_182885.1| - 0.00028 21.0 0.0 0.00032 20.8 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_28 PF13518.1 gi|57640407|ref|YP_182885.1| - 0.00034 20.5 0.0 0.00039 20.3 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain GntR PF00392.16 gi|57640407|ref|YP_182885.1| - 0.00082 18.7 0.1 0.0011 18.3 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family z-alpha PF02295.12 gi|57640407|ref|YP_182885.1| - 0.0018 17.9 0.0 0.0023 17.6 0.0 1.3 1 1 0 1 1 1 1 Adenosine deaminase z-alpha domain TFIIE_alpha PF02002.12 gi|57640407|ref|YP_182885.1| - 0.0026 17.2 0.1 0.0046 16.4 0.0 1.6 1 1 0 1 1 1 1 TFIIE alpha subunit IF2_N PF04760.10 gi|57640407|ref|YP_182885.1| - 0.0039 16.8 0.0 0.014 15.0 0.0 1.9 1 1 1 2 2 2 1 Translation initiation factor IF-2, N-terminal region Sigma70_r4_2 PF08281.7 gi|57640407|ref|YP_182885.1| - 0.0046 16.3 0.0 0.0099 15.3 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4 PF04545.11 gi|57640407|ref|YP_182885.1| - 0.0047 16.2 0.0 0.0085 15.3 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r3 PF04539.11 gi|57640407|ref|YP_182885.1| - 0.0047 16.7 0.0 0.0072 16.1 0.0 1.4 1 1 0 1 1 1 1 Sigma-70 region 3 Rrf2 PF02082.15 gi|57640407|ref|YP_182885.1| - 0.0088 16.1 0.0 0.011 15.8 0.0 1.1 1 0 0 1 1 1 1 Transcriptional regulator HTH_9 PF08221.6 gi|57640407|ref|YP_182885.1| - 0.0098 15.7 0.0 0.012 15.4 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase III subunit RPC82 helix-turn-helix domain IGR PF09597.5 gi|57640407|ref|YP_182885.1| - 0.01 15.7 0.0 0.016 15.0 0.0 1.3 1 0 0 1 1 1 1 IGR protein motif HTH_DeoR PF08220.7 gi|57640407|ref|YP_182885.1| - 0.011 15.2 0.0 0.014 14.9 0.0 1.2 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_11 PF08279.7 gi|57640407|ref|YP_182885.1| - 0.022 14.3 0.0 0.024 14.2 0.0 1.3 1 0 0 1 1 1 0 HTH domain HTH_10 PF04967.7 gi|57640407|ref|YP_182885.1| - 0.024 14.1 0.0 0.042 13.4 0.0 1.3 1 0 0 1 1 1 0 HTH DNA binding domain SinI PF08671.5 gi|57640407|ref|YP_182885.1| - 0.051 13.0 0.0 0.14 11.6 0.0 1.7 1 0 0 1 1 1 0 Anti-repressor SinI HTH_17 PF12728.2 gi|57640407|ref|YP_182885.1| - 0.054 13.7 0.1 0.081 13.1 0.1 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_AsnC-type PF13404.1 gi|57640407|ref|YP_182885.1| - 0.067 12.7 0.0 0.1 12.1 0.0 1.3 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HRDC PF00570.18 gi|57640407|ref|YP_182885.1| - 0.074 12.7 0.0 0.12 12.0 0.0 1.4 1 0 0 1 1 1 0 HRDC domain GerE PF00196.14 gi|57640407|ref|YP_182885.1| - 0.1 11.9 0.0 0.14 11.5 0.0 1.2 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family TetR_N PF00440.18 gi|57640407|ref|YP_182885.1| - 0.14 11.8 0.0 0.23 11.1 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family Auto_anti-p27 PF06677.7 gi|57640408|ref|YP_182886.1| - 5.1e-19 67.7 0.7 7.4e-19 67.2 0.5 1.3 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DZR PF12773.2 gi|57640408|ref|YP_182886.1| - 0.00015 21.4 0.7 0.00023 20.9 0.5 1.2 1 0 0 1 1 1 1 Double zinc ribbon Prok-RING_1 PF14446.1 gi|57640408|ref|YP_182886.1| - 0.0046 16.6 0.4 0.0066 16.1 0.3 1.2 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 zinc-ribbons_6 PF07191.7 gi|57640408|ref|YP_182886.1| - 0.0046 16.7 0.5 0.0064 16.2 0.3 1.3 1 0 0 1 1 1 1 zinc-ribbons zf-ribbon_3 PF13248.1 gi|57640408|ref|YP_182886.1| - 0.0068 15.5 4.2 0.013 14.6 2.9 1.5 1 1 0 1 1 1 1 zinc-ribbon domain DUF4635 PF15466.1 gi|57640408|ref|YP_182886.1| - 0.01 15.1 2.4 0.013 14.7 1.7 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4635) zf-FPG_IleRS PF06827.9 gi|57640408|ref|YP_182886.1| - 0.01 15.4 3.7 0.018 14.6 2.5 1.4 1 0 0 1 1 1 0 Zinc finger found in FPG and IleRS TF_Zn_Ribbon PF08271.7 gi|57640408|ref|YP_182886.1| - 0.01 15.1 2.1 0.024 13.9 1.5 1.6 1 0 0 1 1 1 0 TFIIB zinc-binding zinc_ribbon_2 PF13240.1 gi|57640408|ref|YP_182886.1| - 0.018 14.5 3.2 0.062 12.8 2.2 1.8 1 1 0 1 1 1 0 zinc-ribbon domain DNA_ligase_ZBD PF03119.11 gi|57640408|ref|YP_182886.1| - 0.021 14.5 0.1 0.021 14.5 0.1 2.4 1 1 1 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain GFA PF04828.9 gi|57640408|ref|YP_182886.1| - 0.021 14.7 0.4 0.31 10.9 0.0 2.1 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme zf-NADH-PPase PF09297.6 gi|57640408|ref|YP_182886.1| - 0.028 13.9 5.0 0.1 12.1 3.5 1.9 1 1 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain Cys_rich_CPCC PF14206.1 gi|57640408|ref|YP_182886.1| - 0.032 13.7 0.3 0.052 13.1 0.2 1.4 1 0 0 1 1 1 0 Cysteine-rich CPCC Apolipoprotein PF01442.13 gi|57640408|ref|YP_182886.1| - 0.049 13.1 3.4 0.065 12.7 2.3 1.1 1 0 0 1 1 1 0 Apolipoprotein A1/A4/E domain DUF3708 PF12501.3 gi|57640408|ref|YP_182886.1| - 0.07 12.9 0.0 0.07 12.9 0.0 1.1 1 0 0 1 1 1 0 Phosphate ATP-binding cassette transporter zf-C4pol PF14260.1 gi|57640408|ref|YP_182886.1| - 0.073 13.0 0.4 0.2 11.6 0.1 1.7 1 1 1 2 2 2 0 C4-type zinc-finger of DNA polymerase delta Phasin PF05597.6 gi|57640408|ref|YP_182886.1| - 0.076 12.7 0.4 0.11 12.3 0.3 1.2 1 0 0 1 1 1 0 Poly(hydroxyalcanoate) granule associated protein (phasin) zf-C4_Topoisom PF01396.14 gi|57640408|ref|YP_182886.1| - 0.082 12.4 3.0 0.32 10.5 2.1 1.9 1 1 0 1 1 1 0 Topoisomerase DNA binding C4 zinc finger BLOC1_2 PF10046.4 gi|57640408|ref|YP_182886.1| - 0.084 13.0 1.7 0.14 12.3 1.2 1.3 1 0 0 1 1 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Fzo_mitofusin PF04799.8 gi|57640408|ref|YP_182886.1| - 0.093 12.1 1.2 0.12 11.7 0.8 1.1 1 0 0 1 1 1 0 fzo-like conserved region zf-LITAF-like PF10601.4 gi|57640408|ref|YP_182886.1| - 0.11 12.3 0.6 1.2 9.0 0.0 2.1 1 1 1 2 2 2 0 LITAF-like zinc ribbon domain Syntaxin-6_N PF09177.6 gi|57640408|ref|YP_182886.1| - 0.11 12.9 0.5 0.17 12.2 0.3 1.3 1 0 0 1 1 1 0 Syntaxin 6, N-terminal IncA PF04156.9 gi|57640408|ref|YP_182886.1| - 0.15 11.6 2.2 0.18 11.3 1.5 1.1 1 0 0 1 1 1 0 IncA protein OrfB_Zn_ribbon PF07282.6 gi|57640408|ref|YP_182886.1| - 0.18 11.4 1.5 0.33 10.6 1.0 1.5 1 0 0 1 1 1 0 Putative transposase DNA-binding domain V_ATPase_I PF01496.14 gi|57640408|ref|YP_182886.1| - 0.26 9.1 1.4 0.32 8.8 0.9 1.0 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family Sds3 PF08598.6 gi|57640408|ref|YP_182886.1| - 0.32 10.5 5.1 0.41 10.1 3.5 1.2 1 0 0 1 1 1 0 Sds3-like Ogr_Delta PF04606.7 gi|57640408|ref|YP_182886.1| - 0.37 10.4 2.6 11 5.7 0.3 2.3 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger Zn_Tnp_IS1595 PF12760.2 gi|57640408|ref|YP_182886.1| - 0.52 10.1 4.5 4.1 7.3 0.2 2.3 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Fmp27_WPPW PF10359.4 gi|57640408|ref|YP_182886.1| - 0.68 8.2 4.3 0.79 8.0 3.0 1.1 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain zf-ISL3 PF14690.1 gi|57640408|ref|YP_182886.1| - 0.97 9.5 5.4 0.89 9.6 0.3 2.2 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Nudix_N_2 PF14803.1 gi|57640408|ref|YP_182886.1| - 1.8 8.2 7.4 7.9 6.2 3.2 2.7 2 1 0 2 2 1 0 Nudix N-terminal Lzipper-MIP1 PF14389.1 gi|57640408|ref|YP_182886.1| - 2.1 8.5 7.7 5.3 7.2 0.9 2.3 1 1 1 2 2 2 0 Leucine-zipper of ternary complex factor MIP1 Zn_Tnp_IS91 PF14319.1 gi|57640408|ref|YP_182886.1| - 2.4 7.7 5.2 40 3.7 0.6 2.2 1 1 1 2 2 2 0 Transposase zinc-binding domain Zn_Tnp_IS1 PF03811.8 gi|57640408|ref|YP_182886.1| - 4.3 6.9 6.6 6.3 6.3 0.5 2.3 1 1 1 2 2 2 0 InsA N-terminal domain Pox_A_type_inc PF04508.7 gi|57640408|ref|YP_182886.1| - 4.6 7.2 11.3 1.6 8.6 0.8 3.6 2 2 0 3 3 3 0 Viral A-type inclusion protein repeat DegQ PF08181.6 gi|57640408|ref|YP_182886.1| - 7.3 6.4 7.6 0.28 10.9 1.4 1.7 2 1 0 2 2 1 0 DegQ (SacQ) family Arginase PF00491.16 gi|57640409|ref|YP_182887.1| - 9.6e-19 67.7 0.1 1.8e-18 66.8 0.1 1.4 1 1 0 1 1 1 1 Arginase family UPF0489 PF12640.2 gi|57640409|ref|YP_182887.1| - 0.097 12.8 0.3 13 5.9 0.1 2.3 1 1 1 2 2 2 0 UPF0489 domain OMPdecase PF00215.19 gi|57640410|ref|YP_182888.1| - 1.9e-30 105.9 6.7 2.3e-30 105.6 3.7 1.8 2 0 0 2 2 2 1 Orotidine 5'-phosphate decarboxylase / HUMPS family SIS PF01380.17 gi|57640410|ref|YP_182888.1| - 9.4e-22 77.0 0.1 2.5e-21 75.6 0.1 1.7 1 0 0 1 1 1 1 SIS domain SIS_2 PF13580.1 gi|57640410|ref|YP_182888.1| - 9.4e-11 41.5 2.9 6.1e-09 35.7 0.2 2.7 1 1 1 2 2 2 1 SIS domain ThiG PF05690.9 gi|57640410|ref|YP_182888.1| - 5.7e-08 32.1 0.9 9.1e-08 31.4 0.3 1.5 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG HMGL-like PF00682.14 gi|57640410|ref|YP_182888.1| - 5.7e-07 29.4 1.9 0.0014 18.3 0.1 2.4 1 1 1 2 2 2 2 HMGL-like PEP_mutase PF13714.1 gi|57640410|ref|YP_182888.1| - 2.5e-06 26.9 4.3 0.002 17.3 0.1 3.1 3 1 1 4 4 4 2 Phosphoenolpyruvate phosphomutase TMP-TENI PF02581.12 gi|57640410|ref|YP_182888.1| - 2.7e-06 26.6 2.5 1.9e-05 23.8 1.7 2.4 1 1 0 1 1 1 1 Thiamine monophosphate synthase/TENI His_biosynth PF00977.16 gi|57640410|ref|YP_182888.1| - 5.4e-06 25.8 0.7 6.5e-05 22.3 0.3 2.3 1 1 1 2 2 2 1 Histidine biosynthesis protein DUF561 PF04481.7 gi|57640410|ref|YP_182888.1| - 1.2e-05 24.3 0.4 4.9e-05 22.3 0.2 2.0 1 1 0 1 1 1 1 Protein of unknown function (DUF561) Ribul_P_3_epim PF00834.14 gi|57640410|ref|YP_182888.1| - 0.00016 20.8 1.5 0.0003 19.9 1.0 1.5 1 0 0 1 1 1 1 Ribulose-phosphate 3 epimerase family IGPS PF00218.16 gi|57640410|ref|YP_182888.1| - 0.00023 20.3 2.3 0.00043 19.4 0.7 2.2 2 1 0 2 2 2 1 Indole-3-glycerol phosphate synthase QRPTase_C PF01729.14 gi|57640410|ref|YP_182888.1| - 0.00051 19.6 4.3 0.019 14.4 0.1 2.5 1 1 1 2 2 2 1 Quinolinate phosphoribosyl transferase, C-terminal domain NanE PF04131.9 gi|57640410|ref|YP_182888.1| - 0.00053 19.0 1.8 0.00053 19.0 1.3 1.8 2 0 0 2 2 2 1 Putative N-acetylmannosamine-6-phosphate epimerase Trp_syntA PF00290.15 gi|57640410|ref|YP_182888.1| - 0.0015 17.0 2.7 0.019 13.4 0.8 2.5 2 1 1 3 3 3 1 Tryptophan synthase alpha chain Pterin_bind PF00809.17 gi|57640410|ref|YP_182888.1| - 0.0018 17.6 1.4 0.0078 15.5 0.5 2.5 2 1 1 3 3 3 1 Pterin binding enzyme DeoC PF01791.4 gi|57640410|ref|YP_182888.1| - 0.0045 16.3 7.2 0.0096 15.2 2.6 2.5 2 1 0 2 2 2 1 DeoC/LacD family aldolase PRAI PF00697.17 gi|57640410|ref|YP_182888.1| - 0.0097 15.4 0.4 0.021 14.3 0.3 1.5 1 1 0 1 1 1 1 N-(5'phosphoribosyl)anthranilate (PRA) isomerase AP_endonuc_2 PF01261.19 gi|57640410|ref|YP_182888.1| - 0.026 13.8 0.2 0.16 11.2 0.1 2.4 2 1 0 2 2 2 0 Xylose isomerase-like TIM barrel PcrB PF01884.12 gi|57640410|ref|YP_182888.1| - 0.031 13.5 0.7 0.031 13.5 0.5 2.4 2 1 0 3 3 3 0 PcrB family FMN_dh PF01070.13 gi|57640410|ref|YP_182888.1| - 0.034 12.9 2.4 0.056 12.2 1.7 1.3 1 0 0 1 1 1 0 FMN-dependent dehydrogenase RNA_binding PF01877.12 gi|57640410|ref|YP_182888.1| - 0.036 14.0 0.0 0.078 12.9 0.0 1.5 1 0 0 1 1 1 0 RNA binding Dus PF01207.12 gi|57640410|ref|YP_182888.1| - 0.04 12.7 0.4 0.086 11.6 0.3 1.6 1 0 0 1 1 1 0 Dihydrouridine synthase (Dus) Radical_SAM PF04055.16 gi|57640410|ref|YP_182888.1| - 0.041 14.0 1.1 0.54 10.4 0.5 2.7 2 1 0 2 2 2 0 Radical SAM superfamily ADH_zinc_N PF00107.21 gi|57640410|ref|YP_182888.1| - 0.066 12.7 7.2 0.11 12.0 0.5 3.5 2 2 1 3 3 3 0 Zinc-binding dehydrogenase HAD_2 PF13419.1 gi|57640412|ref|YP_182890.1| - 2.3e-30 106.0 0.0 2.9e-30 105.7 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|57640412|ref|YP_182890.1| - 6.6e-18 65.9 0.0 1.4e-12 48.5 0.0 2.1 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|57640412|ref|YP_182890.1| - 5.8e-09 35.5 0.0 1.3e-08 34.4 0.0 1.5 2 0 0 2 2 2 1 HAD-hyrolase-like HAD PF12710.2 gi|57640412|ref|YP_182890.1| - 1.8e-07 31.5 0.0 2.5e-07 31.0 0.0 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase PGP_phosphatase PF09419.5 gi|57640412|ref|YP_182890.1| - 0.0013 18.0 0.0 0.057 12.7 0.0 2.2 2 0 0 2 2 2 1 Mitochondrial PGP phosphatase Hydrolase_6 PF13344.1 gi|57640412|ref|YP_182890.1| - 0.041 13.7 0.0 0.54 10.1 0.0 2.6 2 1 0 2 2 2 0 Haloacid dehalogenase-like hydrolase DUF705 PF05152.7 gi|57640412|ref|YP_182890.1| - 0.051 12.5 0.0 0.33 9.8 0.0 2.0 2 1 1 3 3 3 0 Protein of unknown function (DUF705) DUF4392 PF14336.1 gi|57640414|ref|YP_182892.1| - 2.6e-86 289.0 0.5 6.3e-85 284.5 0.4 2.0 1 1 0 1 1 1 1 Domain of unknown function (DUF4392) HD PF01966.17 gi|57640415|ref|YP_182893.1| - 6.6e-20 71.3 1.9 6.6e-20 71.3 1.3 2.0 2 0 0 2 2 2 1 HD domain Fe_dep_repr_C PF02742.10 gi|57640415|ref|YP_182893.1| - 0.011 15.3 2.3 0.14 11.8 0.1 2.7 2 0 0 2 2 2 0 Iron dependent repressor, metal binding and dimerisation domain HD_4 PF13328.1 gi|57640415|ref|YP_182893.1| - 0.069 12.8 1.2 0.089 12.5 0.2 1.8 2 1 0 2 2 2 0 HD domain KH_5 PF13184.1 gi|57640416|ref|YP_182894.1| - 6e-12 45.1 0.4 1.5e-11 43.9 0.2 1.7 1 0 0 1 1 1 1 NusA-like KH domain KH_2 PF07650.12 gi|57640416|ref|YP_182894.1| - 5.2e-11 41.9 1.0 6.8e-11 41.5 0.2 1.6 2 0 0 2 2 2 1 KH domain Ribosomal_S7e PF01251.13 gi|57640416|ref|YP_182894.1| - 1.7e-06 27.6 0.7 1.1e-05 24.9 0.0 2.3 2 1 0 2 2 2 1 Ribosomal protein S7e KH_1 PF00013.24 gi|57640416|ref|YP_182894.1| - 6.5e-06 25.6 1.0 1.4e-05 24.6 0.7 1.6 1 0 0 1 1 1 1 KH domain KH_3 PF13014.1 gi|57640416|ref|YP_182894.1| - 0.001 18.6 0.7 0.0018 17.9 0.1 1.7 2 0 0 2 2 2 1 KH domain KH_4 PF13083.1 gi|57640416|ref|YP_182894.1| - 0.0016 18.0 1.0 0.0027 17.2 0.3 1.7 2 0 0 2 2 2 1 KH domain DUF3680 PF12441.3 gi|57640419|ref|YP_182897.1| - 0.13 12.1 0.3 0.22 11.3 0.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3680) DUF2316 PF10078.4 gi|57640420|ref|YP_182898.1| - 0.039 13.9 0.0 0.072 13.0 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2316) NHL PF01436.16 gi|57640426|ref|YP_182904.1| - 0.0088 15.9 0.4 5.1 7.2 0.0 3.7 3 0 0 3 3 3 2 NHL repeat tRNA-synt_2 PF00152.15 gi|57640427|ref|YP_182905.1| - 1.2e-96 323.3 1.9 1.6e-96 323.0 1.3 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.20 gi|57640427|ref|YP_182905.1| - 1.6e-12 47.0 0.3 2.9e-12 46.2 0.2 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain TRAP_beta PF05753.9 gi|57640428|ref|YP_182906.1| - 1.8e-08 33.7 0.5 4.6e-08 32.4 0.1 1.8 2 0 0 2 2 2 1 Translocon-associated protein beta (TRAPB) DUF11 PF01345.13 gi|57640428|ref|YP_182906.1| - 5.2e-05 23.2 1.1 0.00019 21.4 0.8 2.0 1 0 0 1 1 1 1 Domain of unknown function DUF11 CARDB PF07705.6 gi|57640428|ref|YP_182906.1| - 0.023 14.7 0.8 0.35 10.9 0.0 3.3 4 0 0 4 4 4 0 CARDB DUF3619 PF12279.3 gi|57640428|ref|YP_182906.1| - 0.029 14.4 0.0 0.063 13.3 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3619) Peptidase_M20 PF01546.23 gi|57640429|ref|YP_182907.1| - 6.9e-37 126.7 0.8 9.6e-37 126.3 0.6 1.2 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|57640429|ref|YP_182907.1| - 1.6e-11 43.9 0.8 2.7e-11 43.1 0.0 1.8 2 0 0 2 2 2 1 Peptidase dimerisation domain OrfB_IS605 PF01385.14 gi|57640430|ref|YP_182908.1| - 1.3e-70 237.3 2.3 1.8e-70 236.9 1.6 1.2 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|57640430|ref|YP_182908.1| - 6.2e-20 70.6 0.0 1.1e-19 69.7 0.0 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|57640430|ref|YP_182908.1| - 3.3e-05 23.1 0.0 8.5e-05 21.7 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain UPF0081 PF03652.10 gi|57640430|ref|YP_182908.1| - 0.00069 19.7 0.0 0.0019 18.3 0.0 1.7 1 1 0 1 1 1 1 Uncharacterised protein family (UPF0081) Lipase_GDSL_2 PF13472.1 gi|57640430|ref|YP_182908.1| - 0.0049 17.0 0.0 0.0084 16.2 0.0 1.4 1 0 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase family 7TMR-DISM_7TM PF07695.6 gi|57640431|ref|YP_182909.1| - 0.0068 16.0 6.6 0.0083 15.8 4.6 1.1 1 0 0 1 1 1 1 7TM diverse intracellular signalling MarC PF01914.12 gi|57640431|ref|YP_182909.1| - 0.014 14.5 5.0 0.015 14.4 3.5 1.1 1 0 0 1 1 1 0 MarC family integral membrane protein MFS_1 PF07690.11 gi|57640431|ref|YP_182909.1| - 0.037 12.7 7.1 0.042 12.5 4.9 1.0 1 0 0 1 1 1 0 Major Facilitator Superfamily Epiglycanin_C PF14654.1 gi|57640431|ref|YP_182909.1| - 0.046 13.7 0.7 0.072 13.0 0.5 1.4 1 0 0 1 1 1 0 Mucin, catalytic, TM and cytoplasmic tail region DUF202 PF02656.10 gi|57640431|ref|YP_182909.1| - 0.62 10.3 4.0 7.5 6.8 2.8 2.1 1 1 0 1 1 1 0 Domain of unknown function (DUF202) DUF2975 PF11188.3 gi|57640431|ref|YP_182909.1| - 9.1 6.0 8.3 15 5.3 5.7 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF2975) Met_10 PF02475.11 gi|57640432|ref|YP_182910.1| - 4.3e-75 251.6 0.1 6e-75 251.2 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein PrmA PF06325.8 gi|57640432|ref|YP_182910.1| - 4.3e-07 29.3 0.0 7.9e-07 28.4 0.0 1.4 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_26 PF13659.1 gi|57640432|ref|YP_182910.1| - 8.4e-07 29.0 0.0 1.6e-06 28.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|57640432|ref|YP_182910.1| - 3.8e-06 26.4 0.0 7.2e-06 25.4 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.1 gi|57640432|ref|YP_182910.1| - 8.5e-05 22.1 0.0 0.00029 20.4 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_15 PF09445.5 gi|57640432|ref|YP_182910.1| - 8.6e-05 22.1 0.0 0.00014 21.5 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase TRM PF02005.11 gi|57640432|ref|YP_182910.1| - 0.002 17.0 0.0 0.0028 16.6 0.0 1.2 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase DNA_methylase PF00145.12 gi|57640432|ref|YP_182910.1| - 0.014 14.5 0.0 0.022 13.8 0.0 1.2 1 0 0 1 1 1 0 C-5 cytosine-specific DNA methylase Cons_hypoth95 PF03602.10 gi|57640432|ref|YP_182910.1| - 0.052 12.9 0.0 0.082 12.2 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical protein 95 Methyltransf_23 PF13489.1 gi|57640432|ref|YP_182910.1| - 0.14 11.8 0.0 0.39 10.4 0.0 1.8 1 1 0 1 1 1 0 Methyltransferase domain AAA_14 PF13173.1 gi|57640433|ref|YP_182911.1| - 6.1e-32 110.2 0.0 1.5e-31 108.9 0.0 1.7 1 0 0 1 1 1 1 AAA domain DUF4143 PF13635.1 gi|57640433|ref|YP_182911.1| - 1.4e-10 41.1 0.0 2.5e-10 40.3 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4143) Arch_ATPase PF01637.13 gi|57640433|ref|YP_182911.1| - 0.005 16.5 0.0 1 9.0 0.0 2.5 1 1 1 2 2 2 2 Archaeal ATPase AAA_25 PF13481.1 gi|57640433|ref|YP_182911.1| - 0.0052 16.2 0.0 0.008 15.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain HAD PF12710.2 gi|57640433|ref|YP_182911.1| - 0.16 12.1 0.0 0.39 10.8 0.0 1.5 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase PmbA_TldD PF01523.11 gi|57640434|ref|YP_182912.1| - 6.7e-63 212.6 0.1 8.8e-63 212.3 0.1 1.1 1 0 0 1 1 1 1 Putative modulator of DNA gyrase DUF2283 PF10049.4 gi|57640435|ref|YP_182913.1| - 3.6e-21 74.7 1.0 4.5e-21 74.4 0.7 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2283) DUF4258 PF14076.1 gi|57640436|ref|YP_182914.1| - 2.9e-07 30.3 1.0 1.6e-06 27.9 0.3 2.3 2 1 0 2 2 2 1 Domain of unknown function (DUF4258) BetR PF08667.5 gi|57640436|ref|YP_182914.1| - 0.11 12.3 0.0 0.13 12.2 0.0 1.1 1 0 0 1 1 1 0 BetR domain PmbA_TldD PF01523.11 gi|57640437|ref|YP_182915.1| - 2.5e-64 217.3 0.4 3.9e-64 216.7 0.3 1.3 1 0 0 1 1 1 1 Putative modulator of DNA gyrase Cupin_2 PF07883.6 gi|57640438|ref|YP_182916.1| - 5e-19 67.5 0.0 6.3e-19 67.2 0.0 1.1 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.14 gi|57640438|ref|YP_182916.1| - 4.8e-13 48.9 0.1 6.1e-13 48.6 0.0 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_1 PF00190.17 gi|57640438|ref|YP_182916.1| - 5.6e-11 42.0 0.0 7.3e-11 41.6 0.0 1.1 1 0 0 1 1 1 1 Cupin CENP-C_C PF11699.3 gi|57640438|ref|YP_182916.1| - 3.9e-05 23.5 0.0 5e-05 23.2 0.0 1.1 1 0 0 1 1 1 1 Mif2/CENP-C like MannoseP_isomer PF01050.13 gi|57640438|ref|YP_182916.1| - 0.00014 21.4 0.0 0.00016 21.2 0.0 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase Cupin_3 PF05899.7 gi|57640438|ref|YP_182916.1| - 0.0012 18.1 0.1 0.0032 16.7 0.1 1.7 1 1 0 1 1 1 1 Protein of unknown function (DUF861) AraC_binding_2 PF14525.1 gi|57640438|ref|YP_182916.1| - 0.0025 17.3 0.0 0.0027 17.3 0.0 1.1 1 0 0 1 1 1 1 AraC-binding-like domain Cupin_6 PF12852.2 gi|57640438|ref|YP_182916.1| - 0.024 14.2 0.0 0.025 14.1 0.0 1.1 1 0 0 1 1 1 0 Cupin JmjC PF02373.17 gi|57640438|ref|YP_182916.1| - 0.074 13.3 0.1 0.11 12.7 0.0 1.4 1 1 0 1 1 1 0 JmjC domain, hydroxylase Ectoine_synth PF06339.7 gi|57640438|ref|YP_182916.1| - 0.083 12.8 0.0 0.11 12.4 0.0 1.1 1 0 0 1 1 1 0 Ectoine synthase Asp_Glu_race PF01177.17 gi|57640439|ref|YP_182917.1| - 2.9e-43 148.2 0.0 3.4e-43 148.0 0.0 1.0 1 0 0 1 1 1 1 Asp/Glu/Hydantoin racemase AroM PF07302.6 gi|57640439|ref|YP_182917.1| - 0.081 12.2 0.0 0.27 10.5 0.0 1.9 2 1 1 3 3 3 0 AroM protein CorA PF01544.13 gi|57640440|ref|YP_182918.1| - 6e-72 242.1 2.2 8e-72 241.7 1.5 1.0 1 0 0 1 1 1 1 CorA-like Mg2+ transporter protein MMR_HSR1_C PF08438.5 gi|57640441|ref|YP_182919.1| - 1.2e-36 125.2 0.0 1.9e-36 124.6 0.0 1.3 1 0 0 1 1 1 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.18 gi|57640441|ref|YP_182919.1| - 5.4e-17 61.8 0.0 4e-16 59.0 0.0 2.3 1 1 0 1 1 1 1 50S ribosome-binding GTPase TGS PF02824.16 gi|57640441|ref|YP_182919.1| - 5e-15 55.0 0.0 1.1e-14 53.9 0.0 1.6 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.13 gi|57640441|ref|YP_182919.1| - 5e-10 38.8 0.1 2.9e-07 29.8 0.0 2.5 2 0 0 2 2 2 2 Ferrous iron transport protein B GTP_EFTU PF00009.22 gi|57640441|ref|YP_182919.1| - 0.014 14.8 0.1 0.29 10.5 0.0 2.5 2 0 0 2 2 2 0 Elongation factor Tu GTP binding domain Miro PF08477.8 gi|57640441|ref|YP_182919.1| - 0.1 13.0 0.0 0.89 10.0 0.0 2.3 2 0 0 2 2 2 0 Miro-like protein LexA_DNA_bind PF01726.11 gi|57640441|ref|YP_182919.1| - 0.15 11.6 0.5 12 5.5 0.0 3.0 2 1 1 3 3 3 0 LexA DNA binding domain CYTH PF01928.16 gi|57640442|ref|YP_182920.1| - 5.8e-27 94.5 3.8 6.6e-27 94.3 2.6 1.0 1 0 0 1 1 1 1 CYTH domain HTH_AsnC-type PF13404.1 gi|57640442|ref|YP_182920.1| - 0.072 12.6 0.0 0.16 11.5 0.0 1.6 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain GerE PF00196.14 gi|57640442|ref|YP_182920.1| - 0.098 11.9 0.0 0.18 11.1 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family HTH_24 PF13412.1 gi|57640443|ref|YP_182921.1| - 4.6e-16 57.9 1.2 6.6e-16 57.4 0.8 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|57640443|ref|YP_182921.1| - 6.7e-13 47.9 1.8 9.3e-13 47.4 1.3 1.2 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_20 PF12840.2 gi|57640443|ref|YP_182921.1| - 1.2e-07 31.4 0.1 2e-07 30.6 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|57640443|ref|YP_182921.1| - 1.5e-07 30.9 0.3 2.6e-07 30.1 0.2 1.4 1 0 0 1 1 1 1 HTH domain MarR_2 PF12802.2 gi|57640443|ref|YP_182921.1| - 2.5e-06 27.0 0.1 3.8e-06 26.4 0.1 1.3 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|57640443|ref|YP_182921.1| - 5.8e-06 25.9 0.3 1.1e-05 25.0 0.2 1.3 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|57640443|ref|YP_182921.1| - 1.1e-05 25.5 0.2 2.1e-05 24.7 0.1 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.14 gi|57640443|ref|YP_182921.1| - 1.2e-05 24.9 0.1 1.7e-05 24.4 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Sigma70_r4 PF04545.11 gi|57640443|ref|YP_182921.1| - 4.2e-05 22.7 0.3 6.7e-05 22.1 0.2 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_23 PF13384.1 gi|57640443|ref|YP_182921.1| - 7.3e-05 22.2 0.0 0.00012 21.6 0.0 1.3 1 0 0 1 1 1 1 Homeodomain-like domain HTH_IclR PF09339.5 gi|57640443|ref|YP_182921.1| - 0.00016 21.1 0.0 0.00031 20.2 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_DeoR PF08220.7 gi|57640443|ref|YP_182921.1| - 0.00044 19.7 0.3 0.00077 18.9 0.2 1.4 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_5 PF01022.15 gi|57640443|ref|YP_182921.1| - 0.00049 19.7 0.0 0.00081 19.0 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_38 PF13936.1 gi|57640443|ref|YP_182921.1| - 0.0015 18.0 0.1 0.003 17.0 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain Penicillinase_R PF03965.11 gi|57640443|ref|YP_182921.1| - 0.0018 18.3 0.0 0.0039 17.2 0.0 1.5 1 0 0 1 1 1 1 Penicillinase repressor B-block_TFIIIC PF04182.7 gi|57640443|ref|YP_182921.1| - 0.0056 16.5 0.3 0.081 12.7 0.0 2.5 2 1 1 3 3 3 1 B-block binding subunit of TFIIIC FeoC PF09012.5 gi|57640443|ref|YP_182921.1| - 0.016 14.8 0.0 0.03 14.0 0.0 1.4 1 0 0 1 1 1 0 FeoC like transcriptional regulator HTH_28 PF13518.1 gi|57640443|ref|YP_182921.1| - 0.026 14.5 0.0 0.047 13.7 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain AsnC_trans_reg PF01037.16 gi|57640443|ref|YP_182921.1| - 0.036 13.7 0.0 0.072 12.8 0.0 1.5 1 0 0 1 1 1 0 AsnC family HTH_34 PF13601.1 gi|57640443|ref|YP_182921.1| - 0.036 14.0 0.0 0.066 13.2 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_32 PF13565.1 gi|57640443|ref|YP_182921.1| - 0.039 14.7 0.2 0.15 12.8 0.1 1.9 2 0 0 2 2 2 0 Homeodomain-like domain Sigma70_r4_2 PF08281.7 gi|57640443|ref|YP_182921.1| - 0.053 12.9 0.1 0.12 11.8 0.1 1.7 1 1 0 1 1 1 0 Sigma-70, region 4 DUF742 PF05331.6 gi|57640443|ref|YP_182921.1| - 0.074 12.6 0.0 0.1 12.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF742) HTH_31 PF13560.1 gi|57640443|ref|YP_182921.1| - 0.077 13.2 0.0 0.15 12.2 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Fe_dep_repress PF01325.14 gi|57640443|ref|YP_182921.1| - 0.085 12.8 0.0 0.19 11.6 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain PCI PF01399.22 gi|57640443|ref|YP_182921.1| - 0.088 13.1 0.2 0.28 11.5 0.0 1.8 2 0 0 2 2 1 0 PCI domain Rrf2 PF02082.15 gi|57640443|ref|YP_182921.1| - 0.097 12.7 0.1 0.38 10.9 0.0 1.8 2 0 0 2 2 2 0 Transcriptional regulator Cullin_Nedd8 PF10557.4 gi|57640443|ref|YP_182921.1| - 0.11 12.3 0.9 0.97 9.3 0.6 2.2 1 1 0 1 1 1 0 Cullin protein neddylation domain Phage_rep_org_N PF09681.5 gi|57640443|ref|YP_182921.1| - 0.12 12.0 0.2 0.4 10.2 0.0 1.8 2 0 0 2 2 2 0 N-terminal phage replisome organiser (Phage_rep_org_N) HTH_Tnp_Tc3_1 PF11427.3 gi|57640443|ref|YP_182921.1| - 0.13 11.8 0.1 0.23 11.1 0.0 1.4 1 0 0 1 1 1 0 Tc3 transposase RPA_C PF08784.6 gi|57640443|ref|YP_182921.1| - 0.14 12.5 0.0 0.23 11.8 0.0 1.3 1 0 0 1 1 1 0 Replication protein A C terminal RuvB_C PF05491.8 gi|57640443|ref|YP_182921.1| - 0.19 11.3 2.5 0.34 10.5 0.1 2.3 3 0 0 3 3 2 0 Holliday junction DNA helicase ruvB C-terminus Flavoprotein PF02441.14 gi|57640444|ref|YP_182922.1| - 4.6e-31 107.1 0.1 7.4e-31 106.5 0.0 1.3 1 1 0 1 1 1 1 Flavoprotein NAD_binding_10 PF13460.1 gi|57640444|ref|YP_182922.1| - 0.0043 17.0 0.1 0.0051 16.8 0.0 1.3 1 1 0 1 1 1 1 NADH(P)-binding DisA_N PF02457.11 gi|57640445|ref|YP_182923.1| - 1.1e-29 102.0 0.2 3.6e-29 100.3 0.0 1.8 2 0 0 2 2 2 1 DisA bacterial checkpoint controller nucleotide-binding DUF1380 PF07128.7 gi|57640445|ref|YP_182923.1| - 0.043 13.6 0.1 0.1 12.3 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1380) PK PF00224.16 gi|57640446|ref|YP_182924.1| - 7.7e-121 402.9 1.8 1e-120 402.5 1.2 1.1 1 0 0 1 1 1 1 Pyruvate kinase, barrel domain PK_C PF02887.11 gi|57640446|ref|YP_182924.1| - 4e-24 84.4 0.0 1.1e-23 83.0 0.0 1.8 2 0 0 2 2 2 1 Pyruvate kinase, alpha/beta domain HpcH_HpaI PF03328.9 gi|57640446|ref|YP_182924.1| - 3.6e-05 22.7 0.3 7.1e-05 21.7 0.0 1.5 2 0 0 2 2 2 1 HpcH/HpaI aldolase/citrate lyase family Peptidase_M54 PF07998.6 gi|57640447|ref|YP_182925.1| - 5.8e-41 140.4 1.1 7.9e-21 74.7 0.0 2.0 2 0 0 2 2 2 2 Peptidase family M54 Metallopep PF12044.3 gi|57640447|ref|YP_182925.1| - 0.00073 18.1 0.0 0.00098 17.6 0.0 1.1 1 0 0 1 1 1 1 Putative peptidase family Reprolysin_2 PF13574.1 gi|57640447|ref|YP_182925.1| - 0.0052 16.8 0.0 0.0085 16.1 0.0 1.3 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Peptidase_M10 PF00413.19 gi|57640447|ref|YP_182925.1| - 0.0097 15.6 0.0 0.011 15.4 0.0 1.3 1 1 0 1 1 1 1 Matrixin Reprolysin_5 PF13688.1 gi|57640447|ref|YP_182925.1| - 0.013 15.4 0.0 0.027 14.4 0.0 1.5 2 0 0 2 2 2 0 Metallo-peptidase family M12 Reprolysin_3 PF13582.1 gi|57640447|ref|YP_182925.1| - 0.019 15.4 0.0 0.054 14.0 0.0 1.7 2 0 0 2 2 2 0 Metallo-peptidase family M12B Reprolysin-like Peptidase_M66 PF10462.4 gi|57640447|ref|YP_182925.1| - 0.025 13.4 0.0 0.031 13.1 0.0 1.1 1 0 0 1 1 1 0 Peptidase M66 Reprolysin_4 PF13583.1 gi|57640447|ref|YP_182925.1| - 0.091 12.2 0.0 0.16 11.4 0.0 1.4 1 0 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like Prenyltrans_2 PF13249.1 gi|57640448|ref|YP_182926.1| - 1e-22 80.6 0.0 3.9e-14 53.0 0.0 3.2 1 1 2 3 3 3 3 Prenyltransferase-like Prenyltrans_1 PF13243.1 gi|57640448|ref|YP_182926.1| - 2.9e-06 27.2 0.0 0.18 11.8 0.0 3.2 3 0 0 3 3 3 2 Prenyltransferase-like Prenyltrans PF00432.16 gi|57640448|ref|YP_182926.1| - 3.5e-05 23.2 10.8 0.032 13.8 0.0 6.2 7 0 0 7 7 7 2 Prenyltransferase and squalene oxidase repeat Ribophorin_II PF05817.9 gi|57640448|ref|YP_182926.1| - 0.04 12.1 0.0 0.2 9.7 0.0 1.8 2 0 0 2 2 2 0 Oligosaccharyltransferase subunit Ribophorin II CRCB PF02537.10 gi|57640449|ref|YP_182927.1| - 1e-30 106.0 8.0 1.1e-30 105.8 5.5 1.0 1 0 0 1 1 1 1 CrcB-like protein DUF21 PF01595.15 gi|57640449|ref|YP_182927.1| - 0.38 10.0 4.7 3.4 6.9 0.7 2.2 1 1 1 2 2 2 0 Domain of unknown function DUF21 DUF4396 PF14342.1 gi|57640449|ref|YP_182927.1| - 0.4 10.7 3.5 4.6 7.3 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4396) Caveolin PF01146.12 gi|57640449|ref|YP_182927.1| - 2.3 7.7 5.4 10 5.6 0.1 2.0 2 0 0 2 2 2 0 Caveolin DUF190 PF02641.10 gi|57640450|ref|YP_182928.1| - 2.2e-42 143.0 0.9 3.4e-42 142.4 0.4 1.4 1 1 1 2 2 2 2 Uncharacterized ACR, COG1993 DFP PF04127.10 gi|57640452|ref|YP_182930.1| - 9e-60 201.4 2.7 3.6e-58 196.2 0.3 2.2 2 0 0 2 2 2 2 DNA / pantothenate metabolism flavoprotein Flavoprotein PF02441.14 gi|57640452|ref|YP_182930.1| - 1.4e-31 108.8 6.8 3.2e-31 107.6 1.7 2.8 2 1 0 2 2 2 1 Flavoprotein PTS_IIB PF02302.12 gi|57640452|ref|YP_182930.1| - 0.0012 19.2 2.5 0.13 12.7 0.1 3.2 3 0 0 3 3 3 1 PTS system, Lactose/Cellobiose specific IIB subunit NAD_binding_10 PF13460.1 gi|57640452|ref|YP_182930.1| - 0.0066 16.4 0.4 0.035 14.1 0.1 2.1 2 1 0 2 2 2 1 NADH(P)-binding MutL_C PF08676.6 gi|57640452|ref|YP_182930.1| - 0.026 14.1 0.0 4.6 6.8 0.0 3.2 3 0 0 3 3 3 0 MutL C terminal dimerisation domain Glyco_transf_4 PF13439.1 gi|57640452|ref|YP_182930.1| - 0.053 13.2 1.3 3.9 7.1 0.1 3.5 3 2 1 4 4 4 0 Glycosyltransferase Family 4 Nit_Regul_Hom PF10126.4 gi|57640452|ref|YP_182930.1| - 0.067 12.9 0.4 0.22 11.3 0.1 2.1 2 0 0 2 2 2 0 Uncharacterized protein, homolog of nitrogen regulatory protein PII Hydrolase_3 PF08282.7 gi|57640453|ref|YP_182931.1| - 1.8e-05 24.4 0.6 0.016 14.7 0.1 2.1 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|57640453|ref|YP_182931.1| - 0.0032 17.6 0.1 0.045 13.9 0.0 2.4 1 1 1 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|57640453|ref|YP_182931.1| - 0.024 15.0 1.0 0.6 10.4 0.1 2.4 1 1 1 2 2 2 0 haloacid dehalogenase-like hydrolase WHEP-TRS PF00458.15 gi|57640453|ref|YP_182931.1| - 0.041 13.5 0.3 4.9 6.9 0.1 2.4 2 0 0 2 2 2 0 WHEP-TRS domain UPF0029 PF01205.14 gi|57640454|ref|YP_182932.1| - 1.4e-39 134.1 0.0 1.9e-39 133.7 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized protein family UPF0029 DUF1949 PF09186.6 gi|57640454|ref|YP_182932.1| - 1.9e-14 52.9 0.0 4.9e-14 51.6 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF1949) Transcrip_reg PF01709.15 gi|57640454|ref|YP_182932.1| - 0.017 14.2 0.0 0.025 13.6 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator DUF1542 PF07564.6 gi|57640454|ref|YP_182932.1| - 0.14 12.2 0.0 0.26 11.3 0.0 1.4 1 0 0 1 1 1 0 Domain of Unknown Function (DUF1542) PPR PF01535.15 gi|57640455|ref|YP_182933.1| - 0.04 13.9 2.7 3.7 7.7 0.0 3.8 5 0 0 5 5 5 0 PPR repeat Parvo_coat_N PF08398.5 gi|57640455|ref|YP_182933.1| - 0.14 12.0 0.2 0.37 10.6 0.0 1.8 2 0 0 2 2 2 0 Parvovirus coat protein VP1 DEAD PF00270.24 gi|57640456|ref|YP_182934.1| - 4.6e-24 84.8 0.0 1.3e-23 83.2 0.0 1.8 2 0 0 2 2 2 1 DEAD/DEAH box helicase DUF1998 PF09369.5 gi|57640456|ref|YP_182934.1| - 1e-15 58.0 0.0 3.1e-15 56.5 0.0 1.9 1 0 0 1 1 1 1 Domain of unknown function (DUF1998) Helicase_C PF00271.26 gi|57640456|ref|YP_182934.1| - 1.2e-15 57.1 0.0 3.8e-15 55.5 0.0 1.9 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|57640456|ref|YP_182934.1| - 0.00012 21.9 0.0 0.00024 20.9 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Esterase PF00756.15 gi|57640457|ref|YP_182935.1| - 4.7e-33 114.6 0.0 7.5e-33 113.9 0.0 1.4 1 0 0 1 1 1 1 Putative esterase Peptidase_S9 PF00326.16 gi|57640457|ref|YP_182935.1| - 0.00054 19.2 0.2 0.001 18.3 0.1 1.4 1 1 0 1 1 1 1 Prolyl oligopeptidase family CBM_20 PF00686.14 gi|57640457|ref|YP_182935.1| - 0.00091 18.7 0.0 0.0026 17.3 0.0 1.8 1 0 0 1 1 1 1 Starch binding domain Abhydrolase_6 PF12697.2 gi|57640457|ref|YP_182935.1| - 0.018 14.9 0.0 0.061 13.1 0.0 1.7 1 1 0 1 1 1 0 Alpha/beta hydrolase family Esterase_phd PF10503.4 gi|57640457|ref|YP_182935.1| - 0.037 13.2 0.0 0.063 12.5 0.0 1.3 1 0 0 1 1 1 0 Esterase PHB depolymerase Abhydrolase_5 PF12695.2 gi|57640457|ref|YP_182935.1| - 0.077 12.7 0.0 0.12 12.1 0.0 1.4 1 0 0 1 1 1 0 Alpha/beta hydrolase family UPF0227 PF05728.7 gi|57640457|ref|YP_182935.1| - 0.12 12.0 0.0 0.2 11.3 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0227) DUF1180 PF06679.7 gi|57640457|ref|YP_182935.1| - 0.33 10.8 2.4 0.46 10.3 1.7 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1180) Herpes_BLLF1 PF05109.8 gi|57640457|ref|YP_182935.1| - 0.43 8.4 13.6 0.59 8.0 9.4 1.1 1 0 0 1 1 1 0 Herpes virus major outer envelope glycoprotein (BLLF1) Rubrerythrin PF02915.12 gi|57640458|ref|YP_182936.1| - 3e-26 92.3 13.6 1.6e-25 90.0 9.4 1.9 1 1 0 1 1 1 1 Rubrerythrin Ferritin PF00210.19 gi|57640458|ref|YP_182936.1| - 1.7e-05 24.6 5.4 2.2e-05 24.2 3.8 1.1 1 0 0 1 1 1 1 Ferritin-like domain DZR PF12773.2 gi|57640458|ref|YP_182936.1| - 0.00067 19.4 0.6 0.0011 18.7 0.4 1.3 1 0 0 1 1 1 1 Double zinc ribbon Cys_rich_CPCC PF14206.1 gi|57640458|ref|YP_182936.1| - 0.0021 17.5 2.4 0.0048 16.4 1.6 1.6 1 0 0 1 1 1 1 Cysteine-rich CPCC Rubredoxin PF00301.15 gi|57640458|ref|YP_182936.1| - 0.012 15.4 6.4 0.93 9.4 4.5 2.4 1 1 0 1 1 1 0 Rubredoxin zinc_ribbon_2 PF13240.1 gi|57640458|ref|YP_182936.1| - 0.018 14.5 2.0 0.038 13.4 1.4 1.5 1 1 0 1 1 1 0 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|57640458|ref|YP_182936.1| - 0.051 12.7 5.9 0.25 10.6 4.1 2.0 1 1 0 1 1 1 0 zinc-ribbon domain DNA_ligase_ZBD PF03119.11 gi|57640458|ref|YP_182936.1| - 0.08 12.6 6.6 2.6 7.8 0.3 2.6 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Prim_Zn_Ribbon PF08273.7 gi|57640458|ref|YP_182936.1| - 0.15 12.1 2.3 2.2 8.4 0.1 2.4 2 0 0 2 2 2 0 Zinc-binding domain of primase-helicase DUF1610 PF07754.6 gi|57640458|ref|YP_182936.1| - 0.19 11.8 5.9 1.1 9.3 0.4 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) zf-ISL3 PF14690.1 gi|57640458|ref|YP_182936.1| - 0.23 11.4 1.4 9.1 6.4 0.1 2.4 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-NADH-PPase PF09297.6 gi|57640458|ref|YP_182936.1| - 0.46 10.0 2.5 4.1 7.0 0.3 2.3 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zf-C2H2_4 PF13894.1 gi|57640458|ref|YP_182936.1| - 0.49 10.8 1.9 29 5.2 0.1 2.8 2 0 0 2 2 2 0 C2H2-type zinc finger TerY-C PF15616.1 gi|57640458|ref|YP_182936.1| - 1.5 8.7 4.6 43 4.0 3.2 2.7 1 1 2 3 3 3 0 TerY-C metal binding domain TF_Zn_Ribbon PF08271.7 gi|57640458|ref|YP_182936.1| - 2 7.8 5.7 21 4.5 0.3 2.5 1 1 1 2 2 2 0 TFIIB zinc-binding Lar_restr_allev PF14354.1 gi|57640458|ref|YP_182936.1| - 2 8.7 5.9 17 5.7 2.3 2.6 2 1 1 3 3 2 0 Restriction alleviation protein Lar FdhE PF04216.7 gi|57640458|ref|YP_182936.1| - 6.2 6.4 6.0 8.4 6.0 0.1 2.3 1 1 1 2 2 2 0 Protein involved in formate dehydrogenase formation Rubredoxin PF00301.15 gi|57640459|ref|YP_182937.1| - 2.5e-26 91.2 4.3 2.8e-26 91.1 3.0 1.0 1 0 0 1 1 1 1 Rubredoxin zf-Sec23_Sec24 PF04810.10 gi|57640459|ref|YP_182937.1| - 8.9e-05 21.9 0.2 0.045 13.3 0.0 2.1 2 0 0 2 2 2 2 Sec23/Sec24 zinc finger zf-RanBP PF00641.13 gi|57640459|ref|YP_182937.1| - 0.00087 18.3 3.8 0.29 10.2 0.1 2.2 2 0 0 2 2 2 2 Zn-finger in Ran binding protein and others A2L_zn_ribbon PF08792.5 gi|57640459|ref|YP_182937.1| - 0.008 15.6 0.9 2.2 7.8 0.0 2.2 2 0 0 2 2 2 2 A2L zinc ribbon domain DUF2296 PF10058.4 gi|57640459|ref|YP_182937.1| - 0.011 15.4 0.4 0.72 9.6 0.0 2.1 2 0 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) TF_Zn_Ribbon PF08271.7 gi|57640459|ref|YP_182937.1| - 0.072 12.4 3.1 4.3 6.7 0.6 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding ADK_lid PF05191.9 gi|57640459|ref|YP_182937.1| - 0.074 12.7 0.0 0.14 11.8 0.0 1.4 1 1 0 1 1 1 0 Adenylate kinase, active site lid Prok-RING_1 PF14446.1 gi|57640459|ref|YP_182937.1| - 0.09 12.5 0.5 1.6 8.5 0.0 2.0 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 zinc_ribbon_2 PF13240.1 gi|57640459|ref|YP_182937.1| - 0.12 11.9 1.3 1.4 8.5 0.0 2.1 2 0 0 2 2 2 0 zinc-ribbon domain zf-MIZ PF02891.15 gi|57640459|ref|YP_182937.1| - 0.12 11.9 3.1 1.2 8.6 0.1 2.1 2 0 0 2 2 2 0 MIZ/SP-RING zinc finger Desulfoferrod_N PF06397.7 gi|57640459|ref|YP_182937.1| - 0.54 9.6 2.2 1.5 8.3 0.3 2.0 2 0 0 2 2 2 0 Desulfoferrodoxin, N-terminal domain zf-ribbon_3 PF13248.1 gi|57640459|ref|YP_182937.1| - 1.5 8.1 3.7 20 4.5 2.6 2.2 1 1 0 1 1 1 0 zinc-ribbon domain Desulfoferrodox PF01880.13 gi|57640460|ref|YP_182938.1| - 6.1e-30 103.3 0.2 7e-30 103.1 0.2 1.0 1 0 0 1 1 1 1 Desulfoferrodoxin DUF996 PF06195.8 gi|57640461|ref|YP_182939.1| - 1e-07 32.0 2.7 1e-07 32.0 1.9 2.3 2 0 0 2 2 2 1 Protein of unknown function (DUF996) DUF59 PF01883.14 gi|57640462|ref|YP_182940.1| - 1.1e-06 28.4 0.0 1.7e-06 27.9 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF59 SHMT PF00464.14 gi|57640463|ref|YP_182941.1| - 1.1e-81 274.2 0.0 1.4e-81 273.9 0.0 1.0 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Aminotran_1_2 PF00155.16 gi|57640463|ref|YP_182941.1| - 5.3e-13 48.6 0.0 8e-13 48.0 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|57640463|ref|YP_182941.1| - 1e-12 47.7 0.0 1.4e-12 47.3 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.14 gi|57640463|ref|YP_182941.1| - 2.6e-10 39.5 0.0 5.1e-10 38.6 0.0 1.6 1 1 0 1 1 1 1 Aminotransferase class-V SelA PF03841.8 gi|57640463|ref|YP_182941.1| - 4.9e-05 22.2 0.0 8.2e-05 21.5 0.0 1.3 1 0 0 1 1 1 1 L-seryl-tRNA selenium transferase Cys_Met_Meta_PP PF01053.15 gi|57640463|ref|YP_182941.1| - 0.015 13.6 0.0 0.032 12.5 0.0 1.5 1 1 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme CheD PF03975.8 gi|57640463|ref|YP_182941.1| - 0.03 14.0 0.0 0.061 13.0 0.0 1.4 1 0 0 1 1 1 0 CheD chemotactic sensory transduction DegT_DnrJ_EryC1 PF01041.12 gi|57640463|ref|YP_182941.1| - 0.052 12.5 0.0 0.16 11.0 0.0 1.8 2 0 0 2 2 2 0 DegT/DnrJ/EryC1/StrS aminotransferase family DUF2871 PF11070.3 gi|57640465|ref|YP_182943.1| - 0.059 13.5 0.0 0.06 13.5 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2871) TFIIS_C PF01096.13 gi|57640468|ref|YP_182946.1| - 7.2e-21 73.5 4.4 7.2e-21 73.5 3.0 3.1 3 0 0 3 3 3 1 Transcription factor S-II (TFIIS) RNA_POL_M_15KD PF02150.11 gi|57640468|ref|YP_182946.1| - 1.1e-16 60.2 15.9 1.6e-16 59.6 1.6 3.1 3 0 0 3 3 3 1 RNA polymerases M/15 Kd subunit zinc_ribbon_2 PF13240.1 gi|57640468|ref|YP_182946.1| - 6.4e-07 28.6 10.6 0.00067 19.0 0.1 3.5 3 1 0 3 3 3 2 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|57640468|ref|YP_182946.1| - 8.9e-07 28.4 8.1 0.0014 18.2 0.5 2.5 2 1 0 2 2 2 2 Putative transposase DNA-binding domain Zn_Tnp_IS1595 PF12760.2 gi|57640468|ref|YP_182946.1| - 1.4e-06 27.9 12.4 0.0017 18.0 2.2 2.7 2 1 0 2 2 2 2 Transposase zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|57640468|ref|YP_182946.1| - 1.6e-06 27.1 12.3 0.063 12.5 0.1 4.2 4 0 0 4 4 4 2 zinc-ribbon domain DZR PF12773.2 gi|57640468|ref|YP_182946.1| - 1.1e-05 25.0 7.6 0.0049 16.6 0.3 2.7 2 1 0 2 2 2 2 Double zinc ribbon DUF2387 PF09526.5 gi|57640468|ref|YP_182946.1| - 1.6e-05 24.7 9.3 0.0048 16.7 1.1 2.6 2 1 0 2 2 2 2 Probable metal-binding protein (DUF2387) PhnA_Zn_Ribbon PF08274.7 gi|57640468|ref|YP_182946.1| - 6.3e-05 22.6 6.9 0.044 13.5 0.2 3.2 2 1 0 2 2 2 2 PhnA Zinc-Ribbon zinc_ribbon_5 PF13719.1 gi|57640468|ref|YP_182946.1| - 0.00014 21.3 11.3 0.32 10.6 0.1 4.3 3 1 0 4 4 4 2 zinc-ribbon domain Baculo_LEF5_C PF11792.3 gi|57640468|ref|YP_182946.1| - 0.00033 19.9 0.3 0.00033 19.9 0.2 3.2 3 1 0 3 3 3 1 Baculoviridae late expression factor 5 C-terminal domain zinc_ribbon_4 PF13717.1 gi|57640468|ref|YP_182946.1| - 0.00067 19.2 13.3 0.42 10.3 0.1 4.4 3 1 0 4 4 4 2 zinc-ribbon domain zf-ISL3 PF14690.1 gi|57640468|ref|YP_182946.1| - 0.0015 18.5 10.7 0.42 10.6 0.0 4.0 3 1 1 4 4 4 2 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Lar_restr_allev PF14354.1 gi|57640468|ref|YP_182946.1| - 0.0017 18.6 10.5 0.099 12.9 1.3 2.8 1 1 2 3 3 3 3 Restriction alleviation protein Lar TF_Zn_Ribbon PF08271.7 gi|57640468|ref|YP_182946.1| - 0.002 17.4 11.2 0.11 11.7 0.7 3.2 2 1 0 2 2 2 2 TFIIB zinc-binding DUF2082 PF09855.4 gi|57640468|ref|YP_182946.1| - 0.0044 16.8 16.3 2.3 8.1 0.1 4.1 2 2 1 3 3 3 1 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) UPF0547 PF10571.4 gi|57640468|ref|YP_182946.1| - 0.0069 16.0 13.0 5.7 6.7 0.7 4.2 4 0 0 4 4 4 0 Uncharacterised protein family UPF0547 Terminase_GpA PF05876.7 gi|57640468|ref|YP_182946.1| - 0.0078 14.6 1.6 0.0078 14.6 1.1 2.0 2 0 0 2 2 2 1 Phage terminase large subunit (GpA) zf-DNA_Pol PF08996.5 gi|57640468|ref|YP_182946.1| - 0.0092 15.3 2.9 0.04 13.2 0.1 2.2 1 1 1 2 2 2 1 DNA Polymerase alpha zinc finger IBR PF01485.16 gi|57640468|ref|YP_182946.1| - 0.014 15.2 10.8 0.25 11.2 0.7 3.1 2 1 0 2 2 2 0 IBR domain Elf1 PF05129.8 gi|57640468|ref|YP_182946.1| - 0.014 15.0 5.2 0.029 14.0 0.3 2.6 1 1 1 2 2 2 0 Transcription elongation factor Elf1 like Zn_ribbon_recom PF13408.1 gi|57640468|ref|YP_182946.1| - 0.021 15.0 7.3 0.33 11.2 0.1 2.7 2 1 0 2 2 2 0 Recombinase zinc beta ribbon domain A2L_zn_ribbon PF08792.5 gi|57640468|ref|YP_182946.1| - 0.025 14.0 9.3 19 4.8 0.0 4.1 4 0 0 4 4 4 0 A2L zinc ribbon domain Ribosomal_L32p PF01783.18 gi|57640468|ref|YP_182946.1| - 0.041 14.0 4.2 2.1 8.6 0.2 3.3 3 1 0 3 3 3 0 Ribosomal L32p protein family PolC_DP2 PF03833.8 gi|57640468|ref|YP_182946.1| - 0.049 11.2 5.9 0.6 7.6 1.0 2.0 1 1 1 2 2 2 0 DNA polymerase II large subunit DP2 DUF2225 PF09986.4 gi|57640468|ref|YP_182946.1| - 0.074 12.5 0.4 0.074 12.5 0.2 2.9 3 1 0 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2225) Cys_rich_CPCC PF14206.1 gi|57640468|ref|YP_182946.1| - 0.1 12.1 0.5 0.1 12.1 0.3 3.0 3 0 0 3 3 3 0 Cysteine-rich CPCC DUF3797 PF12677.2 gi|57640468|ref|YP_182946.1| - 0.11 12.1 12.9 0.35 10.5 0.0 3.9 3 1 1 4 4 4 0 Domain of unknown function (DUF3797) SprT-like PF10263.4 gi|57640468|ref|YP_182946.1| - 0.11 12.1 3.7 0.45 10.1 2.6 1.8 1 1 0 1 1 1 0 SprT-like family FYVE_2 PF02318.11 gi|57640468|ref|YP_182946.1| - 0.12 12.2 5.4 1.7 8.5 0.4 2.3 1 1 1 2 2 2 0 FYVE-type zinc finger Ribosomal_S27e PF01667.12 gi|57640468|ref|YP_182946.1| - 0.15 11.6 7.9 8 6.0 2.1 3.3 2 1 0 2 2 2 0 Ribosomal protein S27 C1_1 PF00130.17 gi|57640468|ref|YP_182946.1| - 0.15 11.8 7.6 0.49 10.1 0.9 2.5 2 1 0 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Zn-ribbon_8 PF09723.5 gi|57640468|ref|YP_182946.1| - 0.17 11.8 16.1 2.2 8.2 0.1 4.1 3 1 0 4 4 4 0 Zinc ribbon domain Nudix_N_2 PF14803.1 gi|57640468|ref|YP_182946.1| - 0.26 11.0 16.5 7.2 6.3 4.8 4.2 2 2 0 2 2 2 0 Nudix N-terminal zf-H2C2_2 PF13465.1 gi|57640468|ref|YP_182946.1| - 0.27 11.5 14.3 2.6 8.4 0.1 4.1 4 0 0 4 4 4 0 Zinc-finger double domain zf-UBP PF02148.14 gi|57640468|ref|YP_182946.1| - 0.27 11.3 4.1 0.95 9.6 0.2 2.6 2 1 0 2 2 2 0 Zn-finger in ubiquitin-hydrolases and other protein DNA_RNApol_7kD PF03604.8 gi|57640468|ref|YP_182946.1| - 0.27 10.7 11.8 6.3 6.3 0.8 3.5 3 1 0 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit zf-TFIIB PF13453.1 gi|57640468|ref|YP_182946.1| - 0.31 10.2 11.8 0.79 8.9 0.6 3.0 2 2 0 2 2 2 0 Transcription factor zinc-finger RecR PF02132.10 gi|57640468|ref|YP_182946.1| - 0.31 10.4 9.9 2 7.9 1.6 3.6 3 1 0 3 3 3 0 RecR protein YhfH PF14149.1 gi|57640468|ref|YP_182946.1| - 0.32 10.8 11.6 7.2 6.4 0.0 4.2 4 0 0 4 4 4 0 YhfH-like protein GFA PF04828.9 gi|57640468|ref|YP_182946.1| - 0.44 10.5 10.5 7.3 6.6 0.0 3.7 1 1 3 4 4 4 0 Glutathione-dependent formaldehyde-activating enzyme VP_N-CPKC PF11475.3 gi|57640468|ref|YP_182946.1| - 0.5 9.9 7.2 18 4.9 0.2 3.2 3 0 0 3 3 3 0 Virion protein N terminal domain zf-RING_3 PF14369.1 gi|57640468|ref|YP_182946.1| - 0.51 10.3 5.6 2.7 8.0 0.0 3.5 4 0 0 4 4 4 0 zinc-finger DUF35_N PF12172.3 gi|57640468|ref|YP_182946.1| - 0.51 10.3 6.8 76 3.3 0.0 4.0 4 0 0 4 4 4 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-C4_Topoisom PF01396.14 gi|57640468|ref|YP_182946.1| - 0.57 9.7 17.6 0.52 9.8 1.9 3.3 2 2 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger NOB1_Zn_bind PF08772.6 gi|57640468|ref|YP_182946.1| - 0.63 9.9 16.5 0.53 10.1 0.5 3.5 2 2 1 3 3 3 0 Nin one binding (NOB1) Zn-ribbon like Rubredoxin PF00301.15 gi|57640468|ref|YP_182946.1| - 0.8 9.6 19.4 0.41 10.5 0.3 4.4 3 1 1 4 4 4 0 Rubredoxin Prok-RING_1 PF14446.1 gi|57640468|ref|YP_182946.1| - 0.84 9.4 6.8 12 5.6 0.3 3.3 3 0 0 3 3 3 0 Prokaryotic RING finger family 1 Ribosomal_L37ae PF01780.14 gi|57640468|ref|YP_182946.1| - 0.84 9.5 10.0 0.57 10.0 0.3 3.0 2 1 1 3 3 3 0 Ribosomal L37ae protein family HypA PF01155.14 gi|57640468|ref|YP_182946.1| - 0.84 9.3 10.7 3.6 7.3 4.5 2.9 1 1 2 3 3 3 0 Hydrogenase expression/synthesis hypA family zf-C2HC_2 PF13913.1 gi|57640468|ref|YP_182946.1| - 1.1 8.9 0.1 1.1 8.9 0.1 3.8 4 0 0 4 4 4 0 zinc-finger of a C2HC-type Ribosomal_L37e PF01907.14 gi|57640468|ref|YP_182946.1| - 1.4 8.7 10.0 3.6 7.4 0.1 3.3 2 1 0 2 2 2 0 Ribosomal protein L37e eIF-5_eIF-2B PF01873.12 gi|57640468|ref|YP_182946.1| - 2.1 8.0 5.3 1.6 8.3 0.4 2.4 2 1 0 2 2 2 0 Domain found in IF2B/IF5 TerY-C PF15616.1 gi|57640468|ref|YP_182946.1| - 2.4 8.1 7.8 5.6 6.9 1.0 2.5 1 1 1 2 2 2 0 TerY-C metal binding domain zf-NADH-PPase PF09297.6 gi|57640468|ref|YP_182946.1| - 2.8 7.5 13.1 15 5.1 3.8 3.8 3 1 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain Auto_anti-p27 PF06677.7 gi|57640468|ref|YP_182946.1| - 3 7.6 14.5 0.44 10.3 1.8 3.0 3 0 0 3 3 3 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) FYDLN_acid PF09538.5 gi|57640468|ref|YP_182946.1| - 3.5 8.2 12.0 2.8 8.5 1.9 2.9 2 1 1 3 3 2 0 Protein of unknown function (FYDLN_acid) Rpr2 PF04032.11 gi|57640468|ref|YP_182946.1| - 4 7.3 11.7 1.4e+02 2.4 8.1 2.5 1 1 0 1 1 1 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain zf-Mss51 PF13824.1 gi|57640468|ref|YP_182946.1| - 4.7 7.1 10.9 2.4 8.0 1.0 3.2 2 2 1 3 3 3 0 Zinc-finger of mitochondrial splicing suppressor 51 DUF164 PF02591.10 gi|57640468|ref|YP_182946.1| - 4.8 7.0 5.7 32 4.4 0.0 3.4 4 0 0 4 4 3 0 Putative zinc ribbon domain PHD PF00628.24 gi|57640468|ref|YP_182946.1| - 6.6 6.5 9.3 10 5.8 1.5 3.3 3 1 0 3 3 3 0 PHD-finger ADK_lid PF05191.9 gi|57640468|ref|YP_182946.1| - 6.8 6.4 10.7 29 4.4 0.1 4.0 4 0 0 4 4 4 0 Adenylate kinase, active site lid Opy2 PF09463.5 gi|57640468|ref|YP_182946.1| - 8.8 6.5 9.1 3.7 7.7 0.0 3.4 4 0 0 4 4 3 0 Opy2 protein zf-HIT PF04438.11 gi|57640468|ref|YP_182946.1| - 9.1 6.0 17.0 2.5 7.8 0.2 3.9 4 0 0 4 4 4 0 HIT zinc finger PCNA_N PF00705.13 gi|57640470|ref|YP_182948.1| - 2.3e-20 72.4 0.0 3.6e-17 62.0 0.0 2.1 2 0 0 2 2 2 2 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.10 gi|57640470|ref|YP_182948.1| - 2.1e-11 43.8 0.0 1.4e-10 41.2 0.0 2.1 2 0 0 2 2 2 1 Proliferating cell nuclear antigen, C-terminal domain Rad1 PF02144.11 gi|57640470|ref|YP_182948.1| - 2.9e-09 36.1 0.1 4e-05 22.5 0.0 2.0 1 1 1 2 2 2 2 Repair protein Rad1/Rec1/Rad17 Rad9 PF04139.8 gi|57640470|ref|YP_182948.1| - 0.0028 16.8 0.0 0.0053 15.9 0.0 1.7 1 1 1 2 2 2 1 Rad9 Hus1 PF04005.7 gi|57640470|ref|YP_182948.1| - 0.023 13.6 0.0 0.086 11.7 0.0 1.9 1 1 0 1 1 1 0 Hus1-like protein Sld5 PF05916.6 gi|57640471|ref|YP_182949.1| - 0.023 14.9 1.7 0.027 14.7 0.6 1.5 1 1 0 1 1 1 0 GINS complex protein AhpC-TSA PF00578.16 gi|57640472|ref|YP_182950.1| - 3.1e-34 117.3 0.0 4.6e-34 116.7 0.0 1.3 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|57640472|ref|YP_182950.1| - 7.6e-15 54.7 0.0 1e-14 54.2 0.0 1.1 1 0 0 1 1 1 1 Redoxin 1-cysPrx_C PF10417.4 gi|57640472|ref|YP_182950.1| - 6.6e-10 38.4 0.2 1.2e-09 37.6 0.2 1.5 1 0 0 1 1 1 1 C-terminal domain of 1-Cys peroxiredoxin Thioredoxin_8 PF13905.1 gi|57640472|ref|YP_182950.1| - 0.1 12.7 0.0 0.16 12.0 0.0 1.4 1 0 0 1 1 1 0 Thioredoxin-like Acetyltransf_3 PF13302.1 gi|57640473|ref|YP_182951.1| - 8.4e-31 107.0 0.1 1e-30 106.7 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|57640473|ref|YP_182951.1| - 1.3e-20 73.8 0.0 1.5e-20 73.7 0.0 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|57640473|ref|YP_182951.1| - 6.2e-13 48.5 0.1 1e-12 47.8 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_8 PF13523.1 gi|57640473|ref|YP_182951.1| - 2.7e-08 33.8 0.1 3.9e-08 33.3 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|57640473|ref|YP_182951.1| - 0.0017 18.5 0.1 0.0026 17.8 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain HTH_3 PF01381.17 gi|57640474|ref|YP_182952.1| - 1.7e-13 50.1 0.8 1.3e-12 47.4 0.1 2.5 2 0 0 2 2 2 1 Helix-turn-helix HTH_31 PF13560.1 gi|57640474|ref|YP_182952.1| - 9.2e-11 41.7 0.1 4.3e-10 39.6 0.1 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_19 PF12844.2 gi|57640474|ref|YP_182952.1| - 3.4e-09 36.6 0.1 3e-08 33.6 0.0 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_17 PF12728.2 gi|57640474|ref|YP_182952.1| - 7.5e-05 22.9 0.1 0.029 14.6 0.0 3.4 3 0 0 3 3 3 1 Helix-turn-helix domain Hjc PF01870.13 gi|57640474|ref|YP_182952.1| - 0.00065 19.2 1.2 0.0021 17.6 0.0 2.2 2 1 0 2 2 2 1 Archaeal holliday junction resolvase (hjc) HTH_26 PF13443.1 gi|57640474|ref|YP_182952.1| - 0.0018 18.4 0.0 0.0078 16.3 0.0 2.1 2 0 0 2 2 2 1 Cro/C1-type HTH DNA-binding domain HTH_11 PF08279.7 gi|57640474|ref|YP_182952.1| - 0.0031 17.1 0.1 0.011 15.3 0.0 2.0 1 0 0 1 1 1 1 HTH domain HTH_25 PF13413.1 gi|57640474|ref|YP_182952.1| - 0.012 15.2 0.1 0.029 13.9 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_23 PF13384.1 gi|57640474|ref|YP_182952.1| - 0.016 14.8 0.0 0.045 13.4 0.0 1.7 1 0 0 1 1 1 0 Homeodomain-like domain MerR PF00376.18 gi|57640474|ref|YP_182952.1| - 0.033 13.7 0.1 0.11 12.0 0.0 1.9 2 0 0 2 2 2 0 MerR family regulatory protein MerR_1 PF13411.1 gi|57640474|ref|YP_182952.1| - 0.056 13.2 0.2 0.28 10.9 0.0 2.3 2 0 0 2 2 1 0 MerR HTH family regulatory protein HTH_28 PF13518.1 gi|57640474|ref|YP_182952.1| - 0.094 12.7 0.1 0.71 9.9 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_38 PF13936.1 gi|57640474|ref|YP_182952.1| - 0.11 12.0 0.3 0.77 9.3 0.0 2.5 3 0 0 3 3 3 0 Helix-turn-helix domain Radical_SAM PF04055.16 gi|57640474|ref|YP_182952.1| - 0.15 12.2 0.3 0.33 11.1 0.2 1.7 1 0 0 1 1 1 0 Radical SAM superfamily HTH_7 PF02796.10 gi|57640474|ref|YP_182952.1| - 0.18 11.7 0.6 0.7 9.8 0.0 2.3 3 0 0 3 3 2 0 Helix-turn-helix domain of resolvase IF2_N PF04760.10 gi|57640474|ref|YP_182952.1| - 2.5 7.8 0.0 2.5 7.8 0.0 3.5 4 0 0 4 4 4 0 Translation initiation factor IF-2, N-terminal region HD PF01966.17 gi|57640475|ref|YP_182953.1| - 1.5e-14 54.0 1.0 1.5e-14 54.0 0.7 2.0 2 1 0 2 2 2 1 HD domain HDOD PF08668.7 gi|57640475|ref|YP_182953.1| - 0.0015 17.8 0.0 0.0033 16.7 0.0 1.5 1 0 0 1 1 1 1 HDOD domain Clp_N PF02861.15 gi|57640475|ref|YP_182953.1| - 0.023 14.6 0.0 0.075 12.9 0.0 1.9 1 0 0 1 1 1 0 Clp amino terminal domain MoeA_N PF03453.12 gi|57640476|ref|YP_182954.1| - 4.6e-58 195.1 0.3 6.7e-58 194.6 0.2 1.2 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.19 gi|57640476|ref|YP_182954.1| - 3e-22 78.5 0.0 5.4e-22 77.7 0.0 1.4 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.10 gi|57640476|ref|YP_182954.1| - 1.6e-21 76.0 0.2 6e-21 74.1 0.0 2.1 2 0 0 2 2 2 1 MoeA C-terminal region (domain IV) 7TMR-HDED PF07697.6 gi|57640476|ref|YP_182954.1| - 0.018 14.7 0.2 0.036 13.8 0.1 1.5 1 0 0 1 1 1 0 7TM-HD extracellular PIN PF01850.16 gi|57640477|ref|YP_182955.1| - 8.3e-14 51.9 0.0 3.7e-13 49.8 0.0 1.8 1 1 0 1 1 1 1 PIN domain MoCF_biosynth PF00994.19 gi|57640479|ref|YP_182957.1| - 7.5e-32 109.7 0.4 8.3e-32 109.5 0.3 1.0 1 0 0 1 1 1 1 Probable molybdopterin binding domain TPP_enzyme_N PF02776.13 gi|57640479|ref|YP_182957.1| - 0.026 14.0 0.2 0.17 11.3 0.0 2.0 2 1 1 3 3 3 0 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AdoMet_Synthase PF01941.14 gi|57640480|ref|YP_182958.1| - 3.5e-181 601.9 6.6 4.1e-181 601.7 4.6 1.0 1 0 0 1 1 1 1 S-adenosylmethionine synthetase (AdoMet synthetase) S-AdoMet_synt_N PF00438.15 gi|57640480|ref|YP_182958.1| - 0.089 13.0 0.1 0.44 10.8 0.0 2.2 2 0 0 2 2 2 0 S-adenosylmethionine synthetase, N-terminal domain Metallophos_2 PF12850.2 gi|57640482|ref|YP_182960.1| - 1.2e-22 80.4 0.0 1.6e-22 80.0 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|57640482|ref|YP_182960.1| - 6e-21 74.7 0.0 7.4e-21 74.4 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_3 PF14582.1 gi|57640482|ref|YP_182960.1| - 2.1e-20 72.9 0.8 1e-12 47.7 0.0 2.3 2 1 0 2 2 2 2 Metallophosphoesterase, calcineurin superfamily Aminotran_1_2 PF00155.16 gi|57640483|ref|YP_182961.1| - 1.2e-78 264.5 0.0 1.4e-78 264.3 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|57640483|ref|YP_182961.1| - 9.4e-11 41.3 0.1 1.5e-10 40.6 0.1 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.14 gi|57640483|ref|YP_182961.1| - 3.6e-06 25.9 0.0 9.9e-06 24.5 0.0 1.6 2 0 0 2 2 2 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.15 gi|57640483|ref|YP_182961.1| - 3.8e-06 25.4 0.0 6e-06 24.7 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.16 gi|57640483|ref|YP_182961.1| - 1.2e-05 24.5 0.0 2e-05 23.9 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase CmcH_NodU PF02543.10 gi|57640484|ref|YP_182962.1| - 1.1e-106 357.0 0.0 1.3e-106 356.7 0.0 1.1 1 0 0 1 1 1 1 Carbamoyltransferase Peptidase_M22 PF00814.20 gi|57640484|ref|YP_182962.1| - 6.2e-06 25.8 0.2 0.00016 21.2 0.0 2.3 2 0 0 2 2 2 1 Glycoprotease family BcrAD_BadFG PF01869.15 gi|57640484|ref|YP_182962.1| - 0.041 13.1 0.2 0.23 10.7 0.0 2.1 2 0 0 2 2 2 0 BadF/BadG/BcrA/BcrD ATPase family HGTP_anticodon PF03129.15 gi|57640485|ref|YP_182963.1| - 8.4e-24 83.3 0.7 1.7e-23 82.3 0.5 1.6 1 0 0 1 1 1 1 Anticodon binding domain ProRS-C_1 PF09180.6 gi|57640485|ref|YP_182963.1| - 7.4e-20 70.6 1.9 2.3e-19 69.0 0.8 2.1 2 0 0 2 2 2 1 Prolyl-tRNA synthetase, C-terminal tRNA-synt_2b PF00587.20 gi|57640485|ref|YP_182963.1| - 3.7e-19 68.9 1.9 6e-19 68.2 0.3 2.0 2 0 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) TIR_2 PF13676.1 gi|57640485|ref|YP_182963.1| - 0.00059 19.9 0.0 0.004 17.2 0.0 2.3 2 0 0 2 2 2 1 TIR domain Rad50_zn_hook PF04423.9 gi|57640485|ref|YP_182963.1| - 0.083 12.3 0.8 0.29 10.6 0.6 1.9 1 0 0 1 1 1 0 Rad50 zinc hook motif ProRS-C_2 PF09181.5 gi|57640485|ref|YP_182963.1| - 0.1 12.5 0.1 0.36 10.7 0.0 1.9 1 0 0 1 1 1 0 Prolyl-tRNA synthetase, C-terminal 2-Hacid_dh_C PF02826.14 gi|57640486|ref|YP_182964.1| - 6.4e-55 185.0 0.0 3.1e-54 182.8 0.0 1.9 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|57640486|ref|YP_182964.1| - 2.8e-38 130.3 0.0 3.3e-38 130.1 0.0 1.0 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain F420_oxidored PF03807.12 gi|57640486|ref|YP_182964.1| - 7.3e-09 35.9 0.0 2e-08 34.5 0.0 1.8 2 0 0 2 2 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.10 gi|57640486|ref|YP_182964.1| - 7.8e-08 32.3 0.0 1.5e-07 31.4 0.0 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase IlvN PF07991.7 gi|57640486|ref|YP_182964.1| - 5.1e-07 29.2 0.2 2.9e-06 26.7 0.0 2.2 3 0 0 3 3 3 1 Acetohydroxy acid isomeroreductase, catalytic domain NAD_Gly3P_dh_N PF01210.18 gi|57640486|ref|YP_182964.1| - 0.00015 21.5 0.3 0.00085 19.0 0.2 2.1 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Shikimate_DH PF01488.15 gi|57640486|ref|YP_182964.1| - 0.00024 21.2 0.2 0.00078 19.5 0.1 1.8 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase AdoHcyase_NAD PF00670.16 gi|57640486|ref|YP_182964.1| - 0.0033 17.3 0.0 0.0075 16.1 0.0 1.6 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain ApbA PF02558.11 gi|57640486|ref|YP_182964.1| - 0.01 15.3 0.0 0.021 14.2 0.0 1.6 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA ThiF PF00899.16 gi|57640486|ref|YP_182964.1| - 0.023 14.4 0.8 1.9 8.2 0.4 2.7 3 0 0 3 3 3 0 ThiF family Semialdhyde_dh PF01118.19 gi|57640486|ref|YP_182964.1| - 0.03 14.6 0.0 0.15 12.3 0.0 2.1 2 0 0 2 2 2 0 Semialdehyde dehydrogenase, NAD binding domain NAD_binding_10 PF13460.1 gi|57640486|ref|YP_182964.1| - 0.034 14.1 0.0 0.064 13.2 0.0 1.5 1 0 0 1 1 1 0 NADH(P)-binding Rossmann-like PF10727.4 gi|57640486|ref|YP_182964.1| - 0.1 12.3 0.0 0.3 10.8 0.0 1.7 1 0 0 1 1 1 0 Rossmann-like domain DUF1743 PF08489.6 gi|57640488|ref|YP_182966.1| - 6.6e-38 129.1 0.0 3.3e-37 126.8 0.0 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF1743) tRNA_anti-codon PF01336.20 gi|57640488|ref|YP_182966.1| - 5.3e-09 35.8 0.0 9.9e-09 34.9 0.0 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain Prok-RING_1 PF14446.1 gi|57640488|ref|YP_182966.1| - 0.00045 19.8 1.4 0.00075 19.1 1.0 1.3 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 tRNA_anti_2 PF13742.1 gi|57640488|ref|YP_182966.1| - 0.0014 18.4 0.0 0.0033 17.2 0.0 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain OrfB_Zn_ribbon PF07282.6 gi|57640488|ref|YP_182966.1| - 0.0041 16.7 0.7 0.0071 15.9 0.5 1.3 1 0 0 1 1 1 1 Putative transposase DNA-binding domain zinc-ribbons_6 PF07191.7 gi|57640488|ref|YP_182966.1| - 0.041 13.6 0.2 0.064 13.0 0.1 1.2 1 0 0 1 1 1 0 zinc-ribbons TF_Zn_Ribbon PF08271.7 gi|57640488|ref|YP_182966.1| - 0.059 12.6 1.4 0.13 11.6 0.9 1.6 1 0 0 1 1 1 0 TFIIB zinc-binding Ribosomal_S27 PF01599.14 gi|57640488|ref|YP_182966.1| - 0.08 12.7 2.6 0.29 10.9 1.8 2.0 1 0 0 1 1 1 0 Ribosomal protein S27a zf-ribbon_3 PF13248.1 gi|57640488|ref|YP_182966.1| - 0.082 12.1 2.5 0.15 11.2 1.7 1.5 1 0 0 1 1 1 0 zinc-ribbon domain RNA_POL_M_15KD PF02150.11 gi|57640488|ref|YP_182966.1| - 0.092 12.4 3.4 0.17 11.5 2.3 1.4 1 0 0 1 1 1 0 RNA polymerases M/15 Kd subunit Methyltrn_RNA_2 PF04013.7 gi|57640489|ref|YP_182967.1| - 2.1e-71 239.5 0.0 2.3e-71 239.4 0.0 1.0 1 0 0 1 1 1 1 Putative SAM-dependent RNA methyltransferase IF-2B PF01008.12 gi|57640491|ref|YP_182969.1| - 1.1e-81 273.9 0.0 1.4e-81 273.6 0.0 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family NTPase_1 PF03266.10 gi|57640492|ref|YP_182970.1| - 1.1e-53 181.3 0.2 1.4e-53 181.0 0.1 1.0 1 0 0 1 1 1 1 NTPase DUF2478 PF10649.4 gi|57640492|ref|YP_182970.1| - 1e-08 34.6 0.1 7.2e-08 31.9 0.0 1.9 1 1 0 1 1 1 1 Protein of unknown function (DUF2478) AAA_22 PF13401.1 gi|57640492|ref|YP_182970.1| - 4.8e-06 26.7 0.2 3.1e-05 24.1 0.2 2.3 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|57640492|ref|YP_182970.1| - 7.3e-06 26.8 0.2 1.3e-05 25.9 0.1 1.7 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|57640492|ref|YP_182970.1| - 5.5e-05 23.2 0.1 0.00018 21.5 0.0 1.9 1 1 0 1 1 1 1 AAA ATPase domain MobB PF03205.9 gi|57640492|ref|YP_182970.1| - 0.00014 21.5 0.1 0.00026 20.7 0.1 1.5 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA PF00004.24 gi|57640492|ref|YP_182970.1| - 0.00015 21.9 0.0 0.00045 20.4 0.0 1.9 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.1 gi|57640492|ref|YP_182970.1| - 0.00025 21.3 0.6 0.00059 20.1 0.1 1.8 2 1 0 2 2 2 1 AAA domain NACHT PF05729.7 gi|57640492|ref|YP_182970.1| - 0.00046 19.8 0.0 0.00074 19.2 0.0 1.3 1 0 0 1 1 1 1 NACHT domain ArgK PF03308.11 gi|57640492|ref|YP_182970.1| - 0.00055 18.7 0.5 0.00087 18.1 0.3 1.4 1 0 0 1 1 1 1 ArgK protein AAA_19 PF13245.1 gi|57640492|ref|YP_182970.1| - 0.00067 19.3 0.3 0.0014 18.3 0.2 1.6 1 0 0 1 1 1 1 Part of AAA domain AAA_28 PF13521.1 gi|57640492|ref|YP_182970.1| - 0.001 19.0 0.2 0.0015 18.5 0.2 1.3 1 0 0 1 1 1 1 AAA domain AAA_5 PF07728.9 gi|57640492|ref|YP_182970.1| - 0.0013 18.4 0.7 0.027 14.1 0.4 2.4 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) Arch_ATPase PF01637.13 gi|57640492|ref|YP_182970.1| - 0.0014 18.3 0.1 0.002 17.8 0.0 1.7 1 1 0 1 1 1 1 Archaeal ATPase AAA_14 PF13173.1 gi|57640492|ref|YP_182970.1| - 0.0022 17.8 0.1 0.018 14.9 0.0 2.4 1 1 0 1 1 1 1 AAA domain cobW PF02492.14 gi|57640492|ref|YP_182970.1| - 0.0039 16.6 0.1 0.02 14.3 0.0 1.9 1 1 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain PhoH PF02562.11 gi|57640492|ref|YP_182970.1| - 0.0051 16.0 0.3 0.0085 15.3 0.2 1.4 1 1 0 1 1 1 1 PhoH-like protein Miro PF08477.8 gi|57640492|ref|YP_182970.1| - 0.0064 16.9 0.0 0.0096 16.4 0.0 1.4 1 0 0 1 1 1 1 Miro-like protein AAA_33 PF13671.1 gi|57640492|ref|YP_182970.1| - 0.0077 16.1 0.0 0.015 15.2 0.0 1.5 1 0 0 1 1 1 1 AAA domain RuvB_N PF05496.7 gi|57640492|ref|YP_182970.1| - 0.0087 15.1 0.2 0.19 10.7 0.0 2.2 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus AAA_30 PF13604.1 gi|57640492|ref|YP_182970.1| - 0.011 15.3 0.3 0.037 13.6 0.2 1.9 1 1 0 1 1 1 0 AAA domain IstB_IS21 PF01695.12 gi|57640492|ref|YP_182970.1| - 0.013 14.9 0.1 2 7.8 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_24 PF13479.1 gi|57640492|ref|YP_182970.1| - 0.015 14.8 0.0 0.19 11.2 0.0 2.0 2 0 0 2 2 2 0 AAA domain SRP54 PF00448.17 gi|57640492|ref|YP_182970.1| - 0.024 14.1 0.0 0.14 11.5 0.0 2.0 1 1 0 1 1 1 0 SRP54-type protein, GTPase domain ATP_bind_1 PF03029.12 gi|57640492|ref|YP_182970.1| - 0.029 13.9 0.0 0.048 13.2 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein RNA_helicase PF00910.17 gi|57640492|ref|YP_182970.1| - 0.03 14.4 0.0 0.069 13.3 0.0 1.6 2 0 0 2 2 1 0 RNA helicase NB-ARC PF00931.17 gi|57640492|ref|YP_182970.1| - 0.036 12.9 0.0 0.053 12.3 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain DUF258 PF03193.11 gi|57640492|ref|YP_182970.1| - 0.049 12.8 0.0 0.066 12.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_10 PF12846.2 gi|57640492|ref|YP_182970.1| - 0.072 12.5 0.0 0.089 12.2 0.0 1.3 1 0 0 1 1 1 0 AAA-like domain KaiC PF06745.8 gi|57640492|ref|YP_182970.1| - 0.079 12.0 0.0 0.16 11.1 0.0 1.5 1 1 0 1 1 1 0 KaiC T2SE PF00437.15 gi|57640492|ref|YP_182970.1| - 0.091 11.6 0.2 0.32 9.8 0.0 1.9 2 0 0 2 2 2 0 Type II/IV secretion system protein AAA_2 PF07724.9 gi|57640492|ref|YP_182970.1| - 0.094 12.6 0.0 1.6 8.6 0.0 2.2 1 1 0 1 1 1 0 AAA domain (Cdc48 subfamily) AAA_29 PF13555.1 gi|57640492|ref|YP_182970.1| - 0.1 12.1 0.1 0.23 11.0 0.1 1.6 1 1 0 1 1 1 0 P-loop containing region of AAA domain AAA_32 PF13654.1 gi|57640492|ref|YP_182970.1| - 0.12 11.0 0.0 0.17 10.5 0.0 1.1 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|57640492|ref|YP_182970.1| - 0.14 12.4 0.0 0.25 11.6 0.0 1.5 1 0 0 1 1 1 0 ABC transporter CBS PF00571.23 gi|57640493|ref|YP_182971.1| - 1.8e-30 104.4 7.6 1.5e-15 56.6 1.7 2.1 2 0 0 2 2 2 2 CBS domain RNA_pol_Rpb2_2 PF04561.9 gi|57640493|ref|YP_182971.1| - 0.015 14.6 0.0 0.021 14.2 0.0 1.3 1 0 0 1 1 1 0 RNA polymerase Rpb2, domain 2 DUF1788 PF08747.6 gi|57640493|ref|YP_182971.1| - 0.034 14.0 0.1 0.051 13.4 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1788) DUF2318 PF10080.4 gi|57640493|ref|YP_182971.1| - 0.064 13.0 0.4 0.13 12.0 0.3 1.5 1 0 0 1 1 1 0 Predicted membrane protein (DUF2318) DUF4428 PF14471.1 gi|57640493|ref|YP_182971.1| - 0.14 11.9 1.7 0.35 10.6 1.2 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4428) PhnA_Zn_Ribbon PF08274.7 gi|57640493|ref|YP_182971.1| - 0.27 11.0 2.9 0.57 10.0 2.0 1.5 1 1 0 1 1 1 0 PhnA Zinc-Ribbon HTH_15 PF12324.3 gi|57640493|ref|YP_182971.1| - 0.69 9.6 3.3 0.8 9.4 0.5 2.3 3 0 0 3 3 3 0 Helix-turn-helix domain of alkylmercury lyase HTH_20 PF12840.2 gi|57640494|ref|YP_182972.1| - 1.4e-12 47.2 0.0 2.2e-12 46.6 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|57640494|ref|YP_182972.1| - 1.3e-10 40.7 0.2 2.6e-10 39.8 0.2 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|57640494|ref|YP_182972.1| - 1.4e-08 33.9 0.2 3e-08 32.9 0.1 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|57640494|ref|YP_182972.1| - 7.4e-08 31.9 0.1 1.8e-07 30.7 0.0 1.7 1 1 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|57640494|ref|YP_182972.1| - 9.9e-08 31.4 0.0 1.7e-07 30.6 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.14 gi|57640494|ref|YP_182972.1| - 3.1e-07 29.9 0.4 5.9e-07 29.0 0.3 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB DUF742 PF05331.6 gi|57640494|ref|YP_182972.1| - 2.4e-05 23.9 0.1 0.00069 19.1 0.0 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF742) MarR PF01047.17 gi|57640494|ref|YP_182972.1| - 0.00011 21.8 0.0 0.00021 20.9 0.0 1.5 1 0 0 1 1 1 1 MarR family Fe_dep_repress PF01325.14 gi|57640494|ref|YP_182972.1| - 0.00029 20.7 0.1 0.00065 19.5 0.0 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_23 PF13384.1 gi|57640494|ref|YP_182972.1| - 0.00029 20.3 0.0 0.00097 18.7 0.0 1.9 1 0 0 1 1 1 1 Homeodomain-like domain Sigma70_r4 PF04545.11 gi|57640494|ref|YP_182972.1| - 0.0005 19.3 0.3 0.0013 17.9 0.1 1.9 2 0 0 2 2 1 1 Sigma-70, region 4 HTH_27 PF13463.1 gi|57640494|ref|YP_182972.1| - 0.001 19.3 0.2 0.0021 18.3 0.0 1.7 2 0 0 2 2 1 1 Winged helix DNA-binding domain Sigma70_r4_2 PF08281.7 gi|57640494|ref|YP_182972.1| - 0.0011 18.3 0.5 0.0029 17.0 0.0 2.0 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_38 PF13936.1 gi|57640494|ref|YP_182972.1| - 0.0013 18.2 0.7 0.0024 17.3 0.5 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_28 PF13518.1 gi|57640494|ref|YP_182972.1| - 0.0039 17.1 0.0 0.012 15.6 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain DUF2250 PF10007.4 gi|57640494|ref|YP_182972.1| - 0.0063 16.3 0.1 0.012 15.4 0.1 1.5 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) GerE PF00196.14 gi|57640494|ref|YP_182972.1| - 0.0099 15.1 0.1 0.03 13.6 0.0 1.8 2 0 0 2 2 2 1 Bacterial regulatory proteins, luxR family CENP-B_N PF04218.8 gi|57640494|ref|YP_182972.1| - 0.013 14.8 0.3 0.052 12.9 0.1 2.1 2 1 1 3 3 3 0 CENP-B N-terminal DNA-binding domain HTH_10 PF04967.7 gi|57640494|ref|YP_182972.1| - 0.015 14.8 0.0 0.042 13.4 0.0 1.7 1 0 0 1 1 1 0 HTH DNA binding domain HTH_11 PF08279.7 gi|57640494|ref|YP_182972.1| - 0.026 14.1 0.7 0.045 13.3 0.1 1.7 2 0 0 2 2 2 0 HTH domain MoeZ_MoeB PF05237.8 gi|57640494|ref|YP_182972.1| - 0.059 12.9 0.0 0.12 11.9 0.0 1.5 1 0 0 1 1 1 0 MoeZ/MoeB domain NUMOD1 PF07453.8 gi|57640494|ref|YP_182972.1| - 0.076 12.8 0.1 0.15 11.9 0.1 1.5 1 0 0 1 1 1 0 NUMOD1 domain HTH_40 PF14493.1 gi|57640494|ref|YP_182972.1| - 0.089 13.0 0.0 0.21 11.7 0.0 1.8 1 1 0 1 1 1 0 Helix-turn-helix domain Alba PF01918.16 gi|57640495|ref|YP_182973.1| - 2.8e-19 68.4 0.7 3.4e-19 68.2 0.5 1.1 1 0 0 1 1 1 1 Alba Rpp20 PF12328.3 gi|57640495|ref|YP_182973.1| - 0.0059 16.2 0.1 0.006 16.2 0.1 1.3 1 0 0 1 1 1 1 Rpp20 subunit of nuclear RNase MRP and P Lyase_1 PF00206.15 gi|57640496|ref|YP_182974.1| - 3.3e-57 194.0 0.2 4.5e-57 193.6 0.2 1.1 1 0 0 1 1 1 1 Lyase ADSL_C PF10397.4 gi|57640496|ref|YP_182974.1| - 2.2e-26 91.6 1.0 6.6e-26 90.1 0.2 2.1 2 0 0 2 2 2 1 Adenylosuccinate lyase C-terminus ASL_C PF08328.6 gi|57640496|ref|YP_182974.1| - 1.5e-06 27.9 0.3 5e-06 26.3 0.2 1.9 1 0 0 1 1 1 1 Adenylosuccinate lyase C-terminal ASL_C2 PF14698.1 gi|57640496|ref|YP_182974.1| - 0.074 13.1 1.1 1.8 8.7 0.0 2.8 2 1 0 2 2 2 0 Argininosuccinate lyase C-terminal DUF134 PF02001.11 gi|57640497|ref|YP_182975.1| - 3.1e-46 155.6 0.1 3.5e-46 155.4 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF134 Sigma70_r4 PF04545.11 gi|57640497|ref|YP_182975.1| - 6.5e-09 34.9 0.1 9.7e-09 34.4 0.1 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4_2 PF08281.7 gi|57640497|ref|YP_182975.1| - 1.8e-08 33.7 0.1 2.4e-08 33.3 0.0 1.2 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_23 PF13384.1 gi|57640497|ref|YP_182975.1| - 1.5e-05 24.4 0.0 2.6e-05 23.7 0.0 1.3 1 0 0 1 1 1 1 Homeodomain-like domain Sigma70_ECF PF07638.6 gi|57640497|ref|YP_182975.1| - 0.00014 21.6 0.3 0.00017 21.3 0.2 1.1 1 0 0 1 1 1 1 ECF sigma factor HTH_31 PF13560.1 gi|57640497|ref|YP_182975.1| - 0.00024 21.2 0.0 0.00027 21.0 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_28 PF13518.1 gi|57640497|ref|YP_182975.1| - 0.0013 18.6 0.1 0.003 17.5 0.1 1.6 1 1 1 2 2 2 1 Helix-turn-helix domain HTH_38 PF13936.1 gi|57640497|ref|YP_182975.1| - 0.0077 15.7 0.0 0.015 14.8 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|57640497|ref|YP_182975.1| - 0.013 15.1 0.0 0.018 14.6 0.0 1.3 1 0 0 1 1 1 0 HTH domain HTH_24 PF13412.1 gi|57640497|ref|YP_182975.1| - 0.014 14.7 0.0 0.019 14.3 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_3 PF01381.17 gi|57640497|ref|YP_182975.1| - 0.017 14.9 0.0 0.029 14.1 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix HTH_Tnp_4 PF13613.1 gi|57640497|ref|YP_182975.1| - 0.017 14.6 0.0 0.024 14.1 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix of DDE superfamily endonuclease HTH_Tnp_ISL3 PF13542.1 gi|57640497|ref|YP_182975.1| - 0.037 13.2 0.1 0.075 12.2 0.0 1.5 1 1 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_1 PF00126.22 gi|57640497|ref|YP_182975.1| - 0.044 13.5 0.1 0.062 13.0 0.1 1.2 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family MarR_2 PF12802.2 gi|57640497|ref|YP_182975.1| - 0.051 13.2 0.0 0.077 12.6 0.0 1.2 1 0 0 1 1 1 0 MarR family HTH_17 PF12728.2 gi|57640497|ref|YP_182975.1| - 0.17 12.1 0.0 0.17 12.1 0.0 1.6 2 0 0 2 2 1 0 Helix-turn-helix domain PTPS PF01242.14 gi|57640498|ref|YP_182976.1| - 1.5e-27 95.7 0.7 2.3e-27 95.1 0.5 1.3 1 1 0 1 1 1 1 6-pyruvoyl tetrahydropterin synthase Ovate PF04844.8 gi|57640499|ref|YP_182977.1| - 0.11 12.2 1.2 12 5.7 0.1 2.6 2 1 0 2 2 2 0 Transcriptional repressor, ovate DUF296 PF03479.10 gi|57640500|ref|YP_182978.1| - 2.2e-32 111.1 0.0 2.4e-32 111.0 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF296) DEAD PF00270.24 gi|57640501|ref|YP_182979.1| - 3.3e-29 101.5 0.0 4.4e-28 97.8 0.0 2.4 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|57640501|ref|YP_182979.1| - 1.3e-12 47.4 0.0 3.6e-12 45.9 0.0 1.7 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|57640501|ref|YP_182979.1| - 9.2e-07 28.8 0.0 3.6e-06 26.9 0.0 2.0 2 1 0 2 2 2 1 Type III restriction enzyme, res subunit SecA_DEAD PF07517.9 gi|57640501|ref|YP_182979.1| - 0.047 12.9 0.0 0.079 12.2 0.0 1.3 1 0 0 1 1 1 0 SecA DEAD-like domain HTH_AsnC-type PF13404.1 gi|57640502|ref|YP_182980.1| - 7.3e-15 54.2 1.0 1.6e-14 53.1 0.7 1.6 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.1 gi|57640502|ref|YP_182980.1| - 1.1e-14 53.5 2.1 2.4e-14 52.4 0.6 2.1 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding AsnC_trans_reg PF01037.16 gi|57640502|ref|YP_182980.1| - 4e-09 36.0 0.1 8.4e-09 35.0 0.0 1.6 1 1 0 1 1 1 1 AsnC family MarR_2 PF12802.2 gi|57640502|ref|YP_182980.1| - 1.2e-07 31.2 0.1 2.3e-07 30.3 0.1 1.5 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|57640502|ref|YP_182980.1| - 1.5e-07 30.9 0.0 4e-07 29.6 0.0 1.6 2 0 0 2 2 1 1 MarR family HTH_20 PF12840.2 gi|57640502|ref|YP_182980.1| - 4.8e-07 29.4 0.1 9.1e-07 28.5 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|57640502|ref|YP_182980.1| - 6.4e-06 25.7 0.2 1.4e-05 24.6 0.2 1.5 1 0 0 1 1 1 1 HTH domain HTH_IclR PF09339.5 gi|57640502|ref|YP_182980.1| - 1.2e-05 24.7 0.1 2.2e-05 23.9 0.1 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_27 PF13463.1 gi|57640502|ref|YP_182980.1| - 0.0011 19.1 0.1 0.0028 17.9 0.0 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain LexA_DNA_bind PF01726.11 gi|57640502|ref|YP_182980.1| - 0.0012 18.3 0.1 0.0033 16.9 0.1 1.8 1 1 0 1 1 1 1 LexA DNA binding domain Sigma70_r4 PF04545.11 gi|57640502|ref|YP_182980.1| - 0.0013 17.9 0.2 0.0036 16.5 0.2 1.7 1 0 0 1 1 1 1 Sigma-70, region 4 Thr_dehydrat_C PF00585.13 gi|57640502|ref|YP_182980.1| - 0.0026 17.3 0.2 0.0043 16.6 0.1 1.3 1 0 0 1 1 1 1 C-terminal regulatory domain of Threonine dehydratase FeoC PF09012.5 gi|57640502|ref|YP_182980.1| - 0.0029 17.2 0.0 0.02 14.6 0.0 2.1 2 0 0 2 2 2 1 FeoC like transcriptional regulator HTH_5 PF01022.15 gi|57640502|ref|YP_182980.1| - 0.0048 16.5 0.1 0.009 15.6 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_DeoR PF08220.7 gi|57640502|ref|YP_182980.1| - 0.0066 15.9 0.1 0.012 15.1 0.0 1.3 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain TrmB PF01978.14 gi|57640502|ref|YP_182980.1| - 0.008 15.8 0.1 0.018 14.7 0.1 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_Mga PF08280.6 gi|57640502|ref|YP_182980.1| - 0.0082 15.8 0.1 0.026 14.2 0.0 1.8 2 0 0 2 2 2 1 M protein trans-acting positive regulator (MGA) HTH domain HTH_9 PF08221.6 gi|57640502|ref|YP_182980.1| - 0.016 15.0 0.0 0.074 12.9 0.0 2.0 2 0 0 2 2 2 0 RNA polymerase III subunit RPC82 helix-turn-helix domain Fe_dep_repress PF01325.14 gi|57640502|ref|YP_182980.1| - 0.018 14.9 0.0 0.049 13.5 0.0 1.8 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain HTH_38 PF13936.1 gi|57640502|ref|YP_182980.1| - 0.021 14.3 0.1 0.057 12.9 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_3 PF01381.17 gi|57640502|ref|YP_182980.1| - 0.047 13.5 0.3 0.1 12.4 0.1 1.7 2 0 0 2 2 1 0 Helix-turn-helix DUF4423 PF14394.1 gi|57640502|ref|YP_182980.1| - 0.051 13.1 0.0 0.085 12.4 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_28 PF13518.1 gi|57640502|ref|YP_182980.1| - 0.061 13.3 0.1 0.14 12.1 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_CodY PF08222.6 gi|57640502|ref|YP_182980.1| - 0.064 12.6 0.0 0.12 11.7 0.0 1.5 1 0 0 1 1 1 0 CodY helix-turn-helix domain CheR_N PF03705.10 gi|57640502|ref|YP_182980.1| - 0.13 11.6 0.7 7.5 6.0 0.0 2.9 4 0 0 4 4 3 0 CheR methyltransferase, all-alpha domain tRNA-synt_1b PF00579.20 gi|57640503|ref|YP_182981.1| - 4.5e-45 154.0 0.2 8.5e-45 153.1 0.1 1.4 1 1 0 1 1 1 1 tRNA synthetases class I (W and Y) DNAPolymera_Pol PF11590.3 gi|57640503|ref|YP_182981.1| - 0.13 11.9 0.3 0.51 10.0 0.0 2.1 2 0 0 2 2 2 0 DNA polymerase catalytic subunit Pol DUF4350 PF14258.1 gi|57640504|ref|YP_182982.1| - 1.6e-06 28.1 0.0 5.7e-06 26.4 0.0 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF4350) ABC_transp_aux PF09822.4 gi|57640504|ref|YP_182982.1| - 3.7e-05 23.3 0.0 5.1e-05 22.8 0.0 1.2 1 0 0 1 1 1 1 ABC-type uncharacterized transport system SBP_bac_6 PF13343.1 gi|57640505|ref|YP_182983.1| - 2e-21 76.4 1.0 3.9e-21 75.4 0.7 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.1 gi|57640505|ref|YP_182983.1| - 5.7e-18 65.6 1.6 5.7e-18 65.6 1.1 2.1 1 1 1 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|57640505|ref|YP_182983.1| - 2e-16 60.6 4.5 2e-16 60.6 3.1 1.7 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.1 gi|57640505|ref|YP_182983.1| - 3.8e-06 26.7 0.0 1.1e-05 25.1 0.0 1.8 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SHOCT PF09851.4 gi|57640505|ref|YP_182983.1| - 0.011 15.1 0.3 0.034 13.6 0.2 1.9 1 0 0 1 1 1 0 Short C-terminal domain Ribosomal_S3_C PF00189.15 gi|57640505|ref|YP_182983.1| - 0.02 15.0 0.0 0.93 9.7 0.0 2.4 2 0 0 2 2 2 0 Ribosomal protein S3, C-terminal domain BPD_transp_1 PF00528.17 gi|57640506|ref|YP_182984.1| - 1.2e-23 83.6 42.5 1.2e-13 51.0 11.9 4.3 2 2 2 4 4 4 2 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.22 gi|57640507|ref|YP_182985.1| - 2.8e-35 121.6 0.0 4.3e-35 120.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|57640507|ref|YP_182985.1| - 2e-09 37.8 0.0 5.2e-06 26.6 0.0 2.3 2 0 0 2 2 2 2 AAA domain TOBE_2 PF08402.5 gi|57640507|ref|YP_182985.1| - 4e-08 33.1 0.3 2e-07 30.9 0.1 2.2 2 0 0 2 2 2 1 TOBE domain AAA_22 PF13401.1 gi|57640507|ref|YP_182985.1| - 0.00062 19.9 1.4 0.0089 16.1 1.0 2.2 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|57640507|ref|YP_182985.1| - 0.00069 18.7 0.0 0.0058 15.7 0.0 1.9 1 1 1 2 2 2 1 AAA ATPase domain AAA PF00004.24 gi|57640507|ref|YP_182985.1| - 0.0024 18.0 0.2 0.077 13.2 0.0 2.3 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) RNA_helicase PF00910.17 gi|57640507|ref|YP_182985.1| - 0.0025 17.9 0.0 0.0052 16.9 0.0 1.5 1 0 0 1 1 1 1 RNA helicase TOBE PF03459.12 gi|57640507|ref|YP_182985.1| - 0.0039 17.2 0.7 0.24 11.5 0.0 2.8 3 0 0 3 3 3 1 TOBE domain AAA_25 PF13481.1 gi|57640507|ref|YP_182985.1| - 0.0052 16.2 0.0 0.45 9.8 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|57640507|ref|YP_182985.1| - 0.014 15.3 0.0 0.025 14.5 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain Rad17 PF03215.10 gi|57640507|ref|YP_182985.1| - 0.019 13.6 0.0 0.028 13.1 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA_23 PF13476.1 gi|57640507|ref|YP_182985.1| - 0.021 15.1 0.2 0.037 14.3 0.2 1.5 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|57640507|ref|YP_182985.1| - 0.032 14.2 0.3 0.22 11.4 0.1 2.1 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.1 gi|57640507|ref|YP_182985.1| - 0.037 13.6 0.6 3 7.3 0.1 2.4 2 0 0 2 2 2 0 AAA domain Arch_ATPase PF01637.13 gi|57640507|ref|YP_182985.1| - 0.042 13.5 0.0 0.082 12.5 0.0 1.6 1 0 0 1 1 1 0 Archaeal ATPase AAA_17 PF13207.1 gi|57640507|ref|YP_182985.1| - 0.059 14.1 0.3 0.19 12.5 0.1 2.0 2 1 0 2 2 1 0 AAA domain AAA_33 PF13671.1 gi|57640507|ref|YP_182985.1| - 0.068 13.0 0.1 0.25 11.1 0.1 2.0 1 1 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|57640507|ref|YP_182985.1| - 0.079 12.7 0.1 0.33 10.7 0.0 2.0 2 0 0 2 2 2 0 Part of AAA domain AAA_14 PF13173.1 gi|57640507|ref|YP_182985.1| - 0.085 12.7 0.0 0.21 11.4 0.0 1.8 1 0 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|57640507|ref|YP_182985.1| - 0.1 11.9 0.1 0.51 9.7 0.0 1.9 2 0 0 2 2 2 0 AAA-like domain AAA_29 PF13555.1 gi|57640507|ref|YP_182985.1| - 0.11 12.0 0.1 0.22 11.0 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF258 PF03193.11 gi|57640507|ref|YP_182985.1| - 0.14 11.2 0.0 0.27 10.4 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 DUF447 PF04289.7 gi|57640508|ref|YP_182986.1| - 5.6e-35 120.4 0.0 6.5e-35 120.2 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF447) Metallophos_2 PF12850.2 gi|57640509|ref|YP_182987.1| - 4.3e-06 26.6 0.0 1e-05 25.4 0.0 1.6 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|57640509|ref|YP_182987.1| - 3.7e-05 23.2 3.4 7.2e-05 22.2 2.3 1.5 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Big_3_4 PF13754.1 gi|57640509|ref|YP_182987.1| - 0.00024 21.3 0.0 0.0018 18.5 0.0 2.5 2 0 0 2 2 2 1 Bacterial Ig-like domain (group 3) DUF4415 PF14384.1 gi|57640510|ref|YP_182988.1| - 0.00098 19.2 0.0 0.0016 18.5 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4415) CcdA PF07362.7 gi|57640510|ref|YP_182988.1| - 0.0039 17.0 0.0 0.0057 16.4 0.0 1.2 1 0 0 1 1 1 1 Post-segregation antitoxin CcdA DUF3408 PF11888.3 gi|57640510|ref|YP_182988.1| - 0.071 13.0 0.5 0.19 11.6 0.0 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF3408) GTF2I PF02946.9 gi|57640511|ref|YP_182989.1| - 0.12 12.2 0.1 0.29 10.9 0.0 1.6 2 0 0 2 2 2 0 GTF2I-like repeat TrmB PF01978.14 gi|57640516|ref|YP_182994.1| - 0.00027 20.6 0.0 0.00034 20.2 0.0 1.1 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|57640516|ref|YP_182994.1| - 0.0041 16.6 0.0 0.0054 16.3 0.0 1.2 1 0 0 1 1 1 1 IclR helix-turn-helix domain DUF2582 PF10771.4 gi|57640516|ref|YP_182994.1| - 0.0056 16.5 0.0 0.0062 16.3 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2582) HTH_24 PF13412.1 gi|57640516|ref|YP_182994.1| - 0.0092 15.3 0.0 0.011 15.0 0.0 1.1 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|57640516|ref|YP_182994.1| - 0.0095 15.7 0.0 0.011 15.5 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|57640516|ref|YP_182994.1| - 0.021 14.4 0.0 0.025 14.2 0.0 1.1 1 0 0 1 1 1 0 MarR family HTH_9 PF08221.6 gi|57640516|ref|YP_182994.1| - 0.024 14.4 0.0 0.031 14.1 0.0 1.2 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_27 PF13463.1 gi|57640516|ref|YP_182994.1| - 0.035 14.4 0.0 0.039 14.2 0.0 1.1 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_42 PF06224.7 gi|57640516|ref|YP_182994.1| - 0.069 12.4 0.0 0.075 12.3 0.0 1.0 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_5 PF01022.15 gi|57640516|ref|YP_182994.1| - 0.069 12.8 0.0 0.084 12.5 0.0 1.4 1 1 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_AsnC-type PF13404.1 gi|57640516|ref|YP_182994.1| - 0.12 11.9 0.1 0.16 11.4 0.1 1.3 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain LexA_DNA_bind PF01726.11 gi|57640516|ref|YP_182994.1| - 0.13 11.8 0.0 0.15 11.6 0.0 1.2 1 0 0 1 1 1 0 LexA DNA binding domain FeoC PF09012.5 gi|57640516|ref|YP_182994.1| - 0.14 11.9 0.0 0.17 11.6 0.0 1.1 1 0 0 1 1 1 0 FeoC like transcriptional regulator PCNA_N PF00705.13 gi|57640517|ref|YP_182995.1| - 6.2e-14 51.6 0.1 1.9e-13 50.0 0.0 1.8 2 0 0 2 2 2 1 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.10 gi|57640517|ref|YP_182995.1| - 2.2e-08 34.0 0.1 6.8e-07 29.2 0.0 2.3 2 0 0 2 2 2 1 Proliferating cell nuclear antigen, C-terminal domain Rad9 PF04139.8 gi|57640517|ref|YP_182995.1| - 2.7e-06 26.7 0.2 2.4e-05 23.6 0.1 2.0 2 0 0 2 2 2 1 Rad9 Rad1 PF02144.11 gi|57640517|ref|YP_182995.1| - 5.7e-05 22.0 0.0 0.022 13.5 0.0 2.0 2 0 0 2 2 2 2 Repair protein Rad1/Rec1/Rad17 FERM_N PF09379.5 gi|57640518|ref|YP_182996.1| - 0.13 12.2 0.0 0.16 12.0 0.0 1.2 1 0 0 1 1 1 0 FERM N-terminal domain UBA_4 PF14555.1 gi|57640519|ref|YP_182997.1| - 0.11 12.0 0.0 0.18 11.3 0.0 1.3 1 0 0 1 1 1 0 UBA-like domain HTH_28 PF13518.1 gi|57640522|ref|YP_183000.1| - 0.05 13.6 0.0 0.4 10.7 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain TFIIE_alpha PF02002.12 gi|57640522|ref|YP_183000.1| - 1.4 8.4 5.5 0.69 9.4 0.6 2.6 2 0 0 2 2 2 0 TFIIE alpha subunit Antitoxin-MazE PF04014.13 gi|57640523|ref|YP_183001.1| - 7.6e-06 25.5 1.4 0.00013 21.6 0.0 2.4 2 0 0 2 2 2 1 Antidote-toxin recognition MazE CDC48_N PF02359.13 gi|57640523|ref|YP_183001.1| - 0.0063 16.4 0.1 0.014 15.3 0.0 1.6 1 1 0 1 1 1 1 Cell division protein 48 (CDC48), N-terminal domain HAS-barrel PF09378.5 gi|57640523|ref|YP_183001.1| - 0.023 14.5 1.0 4.4 7.2 0.0 2.3 1 1 1 2 2 2 0 HAS barrel domain eIF-1a PF01176.14 gi|57640523|ref|YP_183001.1| - 0.16 11.4 2.9 7.3 6.0 0.4 3.0 2 1 0 2 2 2 0 Translation initiation factor 1A / IF-1 Acetyltransf_1 PF00583.19 gi|57640526|ref|YP_183004.1| - 2.1e-06 27.6 0.0 5.5e-06 26.3 0.0 1.7 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|57640526|ref|YP_183004.1| - 0.00019 21.5 0.0 0.0008 19.5 0.0 2.0 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|57640526|ref|YP_183004.1| - 0.00057 20.0 0.0 0.0014 18.7 0.0 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|57640526|ref|YP_183004.1| - 0.037 13.9 0.0 0.17 11.8 0.0 2.0 2 0 0 2 2 2 0 GCN5-related N-acetyl-transferase PDDEXK_4 PF14281.1 gi|57640527|ref|YP_183005.1| - 0.0066 16.3 1.8 0.0092 15.8 0.5 1.9 2 0 0 2 2 2 1 PD-(D/E)XK nuclease superfamily DUF2968 PF11180.3 gi|57640528|ref|YP_183006.1| - 0.1 11.9 0.2 0.19 11.1 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2968) DUF3149 PF11346.3 gi|57640529|ref|YP_183007.1| - 0.14 11.7 1.3 0.29 10.7 0.9 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3149) GOLD_2 PF13897.1 gi|57640531|ref|YP_183009.1| - 0.077 13.2 0.1 0.17 12.1 0.1 1.5 1 0 0 1 1 1 0 Golgi-dynamics membrane-trafficking Vps36_ESCRT-II PF11605.3 gi|57640533|ref|YP_183011.1| - 0.12 12.2 0.0 0.12 12.1 0.0 1.1 1 0 0 1 1 1 0 Vacuolar protein sorting protein 36 Vps36 EST1_DNA_bind PF10373.4 gi|57640534|ref|YP_183012.1| - 0.0077 15.4 0.1 0.0087 15.2 0.1 1.1 1 0 0 1 1 1 1 Est1 DNA/RNA binding domain BEN PF10523.4 gi|57640534|ref|YP_183012.1| - 0.016 15.2 0.2 0.021 14.8 0.2 1.2 1 0 0 1 1 1 0 BEN domain DUF1667 PF07892.6 gi|57640534|ref|YP_183012.1| - 0.11 12.1 0.0 0.16 11.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1667) AAA_10 PF12846.2 gi|57640536|ref|YP_183014.1| - 5.3e-15 55.6 0.0 1.4e-09 37.8 0.0 2.1 2 0 0 2 2 2 2 AAA-like domain AAA_16 PF13191.1 gi|57640536|ref|YP_183014.1| - 1e-07 32.1 0.0 4.4e-05 23.5 0.0 2.3 2 0 0 2 2 2 1 AAA ATPase domain DUF87 PF01935.12 gi|57640536|ref|YP_183014.1| - 6.2e-07 29.4 0.3 0.0024 17.7 0.0 2.4 2 0 0 2 2 2 2 Domain of unknown function DUF87 AAA_22 PF13401.1 gi|57640536|ref|YP_183014.1| - 1.1e-06 28.8 0.0 0.0012 19.0 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_17 PF13207.1 gi|57640536|ref|YP_183014.1| - 5.1e-05 24.0 0.1 0.00023 21.9 0.0 2.3 2 1 0 2 2 1 1 AAA domain AAA PF00004.24 gi|57640536|ref|YP_183014.1| - 0.00021 21.4 0.1 0.0022 18.1 0.0 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) TrwB_AAD_bind PF10412.4 gi|57640536|ref|YP_183014.1| - 0.00022 20.0 0.0 0.0062 15.2 0.0 2.1 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain AAA_14 PF13173.1 gi|57640536|ref|YP_183014.1| - 0.00046 20.0 0.2 0.89 9.4 0.0 2.3 2 0 0 2 2 2 2 AAA domain ABC_tran PF00005.22 gi|57640536|ref|YP_183014.1| - 0.00049 20.4 0.0 0.0013 19.0 0.0 1.7 2 0 0 2 2 1 1 ABC transporter Arch_ATPase PF01637.13 gi|57640536|ref|YP_183014.1| - 0.00082 19.1 0.4 0.011 15.4 0.0 2.2 2 0 0 2 2 2 1 Archaeal ATPase AAA_18 PF13238.1 gi|57640536|ref|YP_183014.1| - 0.0009 19.5 2.1 0.0019 18.4 0.0 2.4 3 1 0 3 3 2 1 AAA domain AAA_28 PF13521.1 gi|57640536|ref|YP_183014.1| - 0.0013 18.7 0.0 0.0023 17.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain RuvB_N PF05496.7 gi|57640536|ref|YP_183014.1| - 0.0014 17.7 0.0 0.003 16.6 0.0 1.5 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_29 PF13555.1 gi|57640536|ref|YP_183014.1| - 0.003 17.0 0.0 0.0079 15.7 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_35 PF14516.1 gi|57640536|ref|YP_183014.1| - 0.0046 15.6 0.1 0.45 9.1 0.0 2.1 2 0 0 2 2 2 1 AAA-like domain FtsK_SpoIIIE PF01580.13 gi|57640536|ref|YP_183014.1| - 0.0062 16.0 0.0 0.022 14.2 0.0 1.8 2 0 0 2 2 2 1 FtsK/SpoIIIE family MobB PF03205.9 gi|57640536|ref|YP_183014.1| - 0.0063 16.2 0.0 0.015 15.0 0.0 1.6 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B MMR_HSR1 PF01926.18 gi|57640536|ref|YP_183014.1| - 0.0087 16.0 0.1 0.024 14.5 0.0 1.8 2 0 0 2 2 2 1 50S ribosome-binding GTPase RNA_helicase PF00910.17 gi|57640536|ref|YP_183014.1| - 0.011 15.9 0.0 0.037 14.1 0.0 2.0 2 0 0 2 2 1 0 RNA helicase ResIII PF04851.10 gi|57640536|ref|YP_183014.1| - 0.011 15.5 0.1 0.023 14.5 0.0 1.5 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit DUF815 PF05673.8 gi|57640536|ref|YP_183014.1| - 0.012 14.5 0.0 0.021 13.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_19 PF13245.1 gi|57640536|ref|YP_183014.1| - 0.014 15.0 0.0 0.028 14.1 0.0 1.4 1 0 0 1 1 1 0 Part of AAA domain PRK PF00485.13 gi|57640536|ref|YP_183014.1| - 0.016 14.7 0.0 0.027 14.0 0.0 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family PhoH PF02562.11 gi|57640536|ref|YP_183014.1| - 0.02 14.1 0.1 0.22 10.7 0.0 2.1 2 0 0 2 2 2 0 PhoH-like protein AAA_33 PF13671.1 gi|57640536|ref|YP_183014.1| - 0.02 14.7 0.0 0.041 13.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|57640536|ref|YP_183014.1| - 0.024 14.2 0.0 0.065 12.8 0.0 1.7 2 0 0 2 2 2 0 NACHT domain Bac_DnaA PF00308.13 gi|57640536|ref|YP_183014.1| - 0.028 14.0 0.0 0.052 13.1 0.0 1.4 1 0 0 1 1 1 0 Bacterial dnaA protein AAA_23 PF13476.1 gi|57640536|ref|YP_183014.1| - 0.03 14.6 1.7 0.08 13.2 0.0 2.3 2 1 1 3 3 3 0 AAA domain AAA_30 PF13604.1 gi|57640536|ref|YP_183014.1| - 0.038 13.5 0.0 0.095 12.2 0.0 1.6 2 0 0 2 2 2 0 AAA domain PduV-EutP PF10662.4 gi|57640536|ref|YP_183014.1| - 0.045 13.2 0.1 0.48 9.9 0.0 2.4 3 0 0 3 3 2 0 Ethanolamine utilisation - propanediol utilisation DUF258 PF03193.11 gi|57640536|ref|YP_183014.1| - 0.046 12.9 0.0 0.078 12.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 T2SE PF00437.15 gi|57640536|ref|YP_183014.1| - 0.048 12.5 0.0 0.075 11.9 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein NB-ARC PF00931.17 gi|57640536|ref|YP_183014.1| - 0.05 12.4 0.0 0.076 11.8 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain AAA_21 PF13304.1 gi|57640536|ref|YP_183014.1| - 0.053 13.4 3.7 0.61 10.0 2.2 2.9 1 1 0 1 1 1 0 AAA domain SMC_N PF02463.14 gi|57640536|ref|YP_183014.1| - 0.12 11.6 0.0 1.3 8.1 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain Viral_helicase1 PF01443.13 gi|57640536|ref|YP_183014.1| - 0.17 11.3 0.0 0.4 10.1 0.0 1.6 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase HALZ PF02183.13 gi|57640537|ref|YP_183015.1| - 1.1e-05 25.0 26.0 0.013 15.1 5.7 4.1 2 2 2 4 4 4 2 Homeobox associated leucine zipper DUF484 PF04340.7 gi|57640537|ref|YP_183015.1| - 2.4e-05 23.9 2.9 3.7e-05 23.3 2.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF484 V_ATPase_I PF01496.14 gi|57640537|ref|YP_183015.1| - 2.8e-05 22.2 6.6 3.5e-05 21.8 4.6 1.1 1 0 0 1 1 1 1 V-type ATPase 116kDa subunit family bZIP_1 PF00170.16 gi|57640537|ref|YP_183015.1| - 0.00012 21.9 25.3 0.085 12.8 2.9 3.9 1 1 3 4 4 4 3 bZIP transcription factor Tropomyosin_1 PF12718.2 gi|57640537|ref|YP_183015.1| - 0.0002 21.2 21.6 0.00027 20.7 15.0 1.1 1 0 0 1 1 1 1 Tropomyosin like DUF904 PF06005.7 gi|57640537|ref|YP_183015.1| - 0.00043 20.5 24.0 0.002 18.3 6.4 2.4 2 0 0 2 2 2 1 Protein of unknown function (DUF904) DUF4515 PF14988.1 gi|57640537|ref|YP_183015.1| - 0.00046 19.9 24.7 0.01 15.4 5.5 2.8 1 1 2 3 3 3 2 Domain of unknown function (DUF4515) RasGAP_C PF03836.10 gi|57640537|ref|YP_183015.1| - 0.0013 18.4 7.6 0.0013 18.4 5.3 2.3 1 1 1 2 2 2 1 RasGAP C-terminus GAS PF13851.1 gi|57640537|ref|YP_183015.1| - 0.0014 17.9 23.7 0.002 17.3 16.4 1.1 1 0 0 1 1 1 1 Growth-arrest specific micro-tubule binding DivIC PF04977.10 gi|57640537|ref|YP_183015.1| - 0.0014 18.0 28.9 0.026 14.0 4.4 3.6 1 1 2 3 3 3 2 Septum formation initiator Nnf1 PF03980.9 gi|57640537|ref|YP_183015.1| - 0.0019 18.1 1.3 0.0019 18.1 0.9 3.1 2 1 1 3 3 3 1 Nnf1 CENP-F_leu_zip PF10473.4 gi|57640537|ref|YP_183015.1| - 0.0024 17.7 20.8 0.078 12.8 4.1 2.2 1 1 1 2 2 2 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 APG6 PF04111.7 gi|57640537|ref|YP_183015.1| - 0.0024 16.9 15.3 0.0043 16.1 10.6 1.4 1 0 0 1 1 1 1 Autophagy protein Apg6 TMCO5 PF14992.1 gi|57640537|ref|YP_183015.1| - 0.0025 16.9 14.5 0.16 11.1 0.4 2.2 1 1 1 2 2 2 2 TMCO5 family Reo_sigmaC PF04582.7 gi|57640537|ref|YP_183015.1| - 0.0053 15.9 2.0 0.0074 15.5 1.4 1.2 1 0 0 1 1 1 1 Reovirus sigma C capsid protein Hemerythrin PF01814.18 gi|57640537|ref|YP_183015.1| - 0.0061 16.7 2.6 0.66 10.1 0.2 2.8 1 1 2 3 3 3 1 Hemerythrin HHE cation binding domain Myosin_tail_1 PF01576.14 gi|57640537|ref|YP_183015.1| - 0.0084 13.8 18.6 0.012 13.3 12.9 1.2 1 0 0 1 1 1 1 Myosin tail Filament PF00038.16 gi|57640537|ref|YP_183015.1| - 0.0094 15.4 14.9 0.0094 15.4 10.3 1.8 1 1 1 2 2 2 1 Intermediate filament protein Atg14 PF10186.4 gi|57640537|ref|YP_183015.1| - 0.016 14.1 19.9 0.023 13.6 13.8 1.2 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 bZIP_2 PF07716.10 gi|57640537|ref|YP_183015.1| - 0.017 14.9 27.9 1.3 8.8 1.2 4.4 2 1 2 4 4 4 0 Basic region leucine zipper TSC22 PF01166.13 gi|57640537|ref|YP_183015.1| - 0.023 14.6 5.4 0.023 14.6 3.8 3.0 1 1 2 3 3 3 0 TSC-22/dip/bun family CALCOCO1 PF07888.6 gi|57640537|ref|YP_183015.1| - 0.031 12.5 12.2 0.05 11.9 8.5 1.3 1 0 0 1 1 1 0 Calcium binding and coiled-coil domain (CALCOCO1) like DUF445 PF04286.7 gi|57640537|ref|YP_183015.1| - 0.039 13.4 7.0 0.045 13.2 4.9 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF445) TBPIP PF07106.8 gi|57640537|ref|YP_183015.1| - 0.042 13.3 19.1 0.25 10.8 13.0 2.1 1 1 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) DUF342 PF03961.8 gi|57640537|ref|YP_183015.1| - 0.046 12.1 16.1 0.14 10.5 11.2 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF342) Spc24 PF08286.6 gi|57640537|ref|YP_183015.1| - 0.053 13.2 22.6 0.36 10.5 6.3 2.4 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 Striatin PF08232.7 gi|57640537|ref|YP_183015.1| - 0.055 13.7 18.7 24 5.2 12.9 2.3 1 1 0 1 1 1 0 Striatin family TPR_MLP1_2 PF07926.7 gi|57640537|ref|YP_183015.1| - 0.065 12.9 22.5 0.12 12.1 15.6 1.5 1 0 0 1 1 1 0 TPR/MLP1/MLP2-like protein CCDC155 PF14662.1 gi|57640537|ref|YP_183015.1| - 0.076 12.6 23.3 0.41 10.2 16.2 1.8 1 1 0 1 1 1 0 Coiled-coil region of CCDC155 Syntaxin_2 PF14523.1 gi|57640537|ref|YP_183015.1| - 0.084 12.9 17.7 0.038 14.0 7.9 2.3 1 1 1 2 2 2 0 Syntaxin-like protein Chordopox_A13L PF05961.6 gi|57640537|ref|YP_183015.1| - 0.085 12.8 0.4 0.085 12.8 0.3 2.8 2 1 1 3 3 2 0 Chordopoxvirus A13L protein Exonuc_VII_L PF02601.10 gi|57640537|ref|YP_183015.1| - 0.089 11.9 14.3 0.13 11.4 9.9 1.2 1 0 0 1 1 1 0 Exonuclease VII, large subunit ATG16 PF08614.6 gi|57640537|ref|YP_183015.1| - 0.091 12.5 19.9 0.18 11.6 13.7 1.5 1 1 0 1 1 1 0 Autophagy protein 16 (ATG16) Prefoldin_2 PF01920.15 gi|57640537|ref|YP_183015.1| - 0.095 12.4 17.5 0.5 10.1 4.4 2.6 2 1 0 2 2 2 0 Prefoldin subunit DUF972 PF06156.8 gi|57640537|ref|YP_183015.1| - 0.096 13.0 21.6 1 9.7 5.4 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF972) Cep57_CLD PF14073.1 gi|57640537|ref|YP_183015.1| - 0.098 12.4 18.0 0.16 11.7 12.3 1.4 1 1 0 1 1 1 0 Centrosome localisation domain of Cep57 FlaC_arch PF05377.6 gi|57640537|ref|YP_183015.1| - 0.1 12.4 10.9 0.43 10.5 2.5 3.2 2 1 1 3 3 3 0 Flagella accessory protein C (FlaC) DUF2730 PF10805.3 gi|57640537|ref|YP_183015.1| - 0.11 12.2 4.6 0.27 11.0 2.8 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF2730) Spc7 PF08317.6 gi|57640537|ref|YP_183015.1| - 0.11 11.1 19.3 0.17 10.5 13.3 1.2 1 0 0 1 1 1 0 Spc7 kinetochore protein Leu_zip PF15294.1 gi|57640537|ref|YP_183015.1| - 0.11 11.5 22.5 0.024 13.7 7.0 2.0 1 1 1 2 2 2 0 Leucine zipper MIS13 PF08202.6 gi|57640537|ref|YP_183015.1| - 0.17 10.9 11.4 0.21 10.6 7.9 1.1 1 0 0 1 1 1 0 Mis12-Mtw1 protein family AAA_13 PF13166.1 gi|57640537|ref|YP_183015.1| - 0.18 10.2 15.5 0.27 9.6 10.7 1.2 1 0 0 1 1 1 0 AAA domain TINF2_N PF14973.1 gi|57640537|ref|YP_183015.1| - 0.24 11.5 5.6 0.39 10.8 3.9 1.3 1 0 0 1 1 1 0 TERF1-interacting nuclear factor 2 N-terminus DUF4407 PF14362.1 gi|57640537|ref|YP_183015.1| - 0.28 10.0 15.2 0.47 9.3 10.5 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) TMF_TATA_bd PF12325.3 gi|57640537|ref|YP_183015.1| - 0.29 10.8 19.6 1.7 8.4 6.4 2.3 1 1 1 2 2 2 0 TATA element modulatory factor 1 TATA binding CorA PF01544.13 gi|57640537|ref|YP_183015.1| - 0.32 10.0 9.0 0.33 9.9 5.4 1.5 1 1 0 1 1 1 0 CorA-like Mg2+ transporter protein DUF4140 PF13600.1 gi|57640537|ref|YP_183015.1| - 0.33 11.4 10.9 0.54 10.7 1.4 2.6 1 1 1 2 2 2 0 N-terminal domain of unknown function (DUF4140) GrpE PF01025.14 gi|57640537|ref|YP_183015.1| - 0.4 10.2 22.0 0.71 9.4 4.7 2.2 1 1 1 2 2 2 0 GrpE DUF3166 PF11365.3 gi|57640537|ref|YP_183015.1| - 0.43 11.0 7.5 0.79 10.2 5.2 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3166) DivIVA PF05103.8 gi|57640537|ref|YP_183015.1| - 0.45 10.5 23.9 22 5.0 15.6 3.1 1 1 1 2 2 2 0 DivIVA protein DASH_Spc34 PF08657.5 gi|57640537|ref|YP_183015.1| - 0.49 10.0 17.8 0.18 11.4 3.4 2.1 1 1 1 2 2 2 0 DASH complex subunit Spc34 Nup54 PF13874.1 gi|57640537|ref|YP_183015.1| - 0.55 9.9 14.9 3.2 7.4 6.0 2.2 1 1 1 2 2 2 0 Nucleoporin complex subunit 54 Cortex-I_coil PF09304.5 gi|57640537|ref|YP_183015.1| - 0.61 10.1 19.9 1.9 8.5 2.9 2.3 1 1 1 2 2 2 0 Cortexillin I, coiled coil Mnd1 PF03962.10 gi|57640537|ref|YP_183015.1| - 0.63 9.6 17.7 1.7 8.2 12.3 1.6 1 1 0 1 1 1 0 Mnd1 family DUF2935 PF11155.3 gi|57640537|ref|YP_183015.1| - 0.65 10.1 12.5 0.19 11.8 4.9 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF2935) Acetyltransf_11 PF13720.1 gi|57640537|ref|YP_183015.1| - 0.69 10.1 3.7 0.87 9.8 0.6 2.3 1 1 1 2 2 2 0 Udp N-acetylglucosamine O-acyltransferase; Domain 2 TMPIT PF07851.8 gi|57640537|ref|YP_183015.1| - 0.71 8.8 7.5 1 8.3 5.2 1.2 1 0 0 1 1 1 0 TMPIT-like protein Ax_dynein_light PF10211.4 gi|57640537|ref|YP_183015.1| - 0.72 9.6 21.0 2.9 7.6 6.6 2.2 1 1 1 2 2 2 0 Axonemal dynein light chain FlxA PF14282.1 gi|57640537|ref|YP_183015.1| - 0.73 9.8 21.0 5.9 6.8 6.2 2.5 1 1 1 2 2 2 0 FlxA-like protein ADIP PF11559.3 gi|57640537|ref|YP_183015.1| - 0.83 9.5 27.5 0.27 11.1 12.7 2.3 1 1 1 2 2 2 0 Afadin- and alpha -actinin-Binding DUF3450 PF11932.3 gi|57640537|ref|YP_183015.1| - 0.86 8.8 19.3 2.3 7.4 5.4 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF3450) Fmp27_WPPW PF10359.4 gi|57640537|ref|YP_183015.1| - 1 7.6 13.0 1.4 7.2 8.6 1.5 1 1 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain Cep57_MT_bd PF06657.8 gi|57640537|ref|YP_183015.1| - 1 9.3 12.3 4.9 7.1 2.9 3.2 1 1 2 3 3 3 0 Centrosome microtubule-binding domain of Cep57 ETRAMP PF09716.5 gi|57640537|ref|YP_183015.1| - 1.1 9.2 12.5 16 5.5 8.6 2.7 1 1 0 1 1 1 0 Malarial early transcribed membrane protein (ETRAMP) DUF4201 PF13870.1 gi|57640537|ref|YP_183015.1| - 1.1 8.6 23.8 3.5 7.0 16.5 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4201) Mto2_bdg PF12808.2 gi|57640537|ref|YP_183015.1| - 1.1 9.3 20.2 1.7 8.7 1.7 3.5 2 1 1 3 3 3 0 Micro-tubular organiser Mto1 C-term Mto2-binding region Rab5-bind PF09311.6 gi|57640537|ref|YP_183015.1| - 1.2 8.9 23.0 2.8 7.7 5.1 2.1 1 1 1 2 2 2 0 Rabaptin-like protein Vma12 PF11712.3 gi|57640537|ref|YP_183015.1| - 1.4 8.5 13.9 0.08 12.6 1.1 2.3 1 1 1 2 2 2 0 Endoplasmic reticulum-based factor for assembly of V-ATPase DUF2205 PF10224.4 gi|57640537|ref|YP_183015.1| - 1.4 8.4 17.0 5.9 6.5 4.2 2.5 1 1 1 2 2 2 0 Predicted coiled-coil protein (DUF2205) NYD-SP28_assoc PF14775.1 gi|57640537|ref|YP_183015.1| - 1.5 8.5 27.1 3.1 7.5 0.7 4.3 3 1 1 4 4 4 0 Sperm tail C-terminal domain Taxilin PF09728.4 gi|57640537|ref|YP_183015.1| - 1.6 7.7 24.3 14 4.6 16.7 1.9 1 1 0 1 1 1 0 Myosin-like coiled-coil protein Nup88 PF10168.4 gi|57640537|ref|YP_183015.1| - 2 6.1 12.2 2.6 5.7 8.5 1.1 1 0 0 1 1 1 0 Nuclear pore component Shugoshin_N PF07558.6 gi|57640537|ref|YP_183015.1| - 2.1 8.1 22.2 0.18 11.5 1.9 3.4 3 1 1 4 4 2 0 Shugoshin N-terminal coiled-coil region Fib_alpha PF08702.5 gi|57640537|ref|YP_183015.1| - 2.1 8.4 15.9 3.7 7.6 11.0 1.4 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family Syntaxin PF00804.20 gi|57640537|ref|YP_183015.1| - 2.2 8.4 16.0 18 5.5 11.1 2.2 1 1 0 1 1 1 0 Syntaxin WXG100 PF06013.7 gi|57640537|ref|YP_183015.1| - 2.4 8.1 9.1 10 6.2 1.2 3.0 1 1 2 3 3 3 0 Proteins of 100 residues with WXG Seryl_tRNA_N PF02403.17 gi|57640537|ref|YP_183015.1| - 2.8 7.9 21.0 0.4 10.7 9.9 2.3 1 1 1 2 2 2 0 Seryl-tRNA synthetase N-terminal domain Occludin_ELL PF07303.8 gi|57640537|ref|YP_183015.1| - 2.9 8.6 14.9 3.7 8.3 6.9 2.2 1 1 1 2 2 2 0 Occludin homology domain Herpes_BLRF2 PF05812.7 gi|57640537|ref|YP_183015.1| - 3 7.6 22.3 3.3 7.5 4.9 3.3 1 1 2 3 3 3 0 Herpesvirus BLRF2 protein Prp19 PF08606.6 gi|57640537|ref|YP_183015.1| - 3.3 7.5 8.6 3.2 7.5 3.3 2.5 1 1 1 2 2 2 0 Prp19/Pso4-like PspA_IM30 PF04012.7 gi|57640537|ref|YP_183015.1| - 3.3 7.0 21.7 31 3.8 15.0 2.0 1 1 0 1 1 1 0 PspA/IM30 family DUF724 PF05266.9 gi|57640537|ref|YP_183015.1| - 3.7 7.1 15.1 6.2 6.4 10.5 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF724) Macoilin PF09726.4 gi|57640537|ref|YP_183015.1| - 4.1 5.5 19.5 15 3.6 13.5 1.7 1 1 0 1 1 1 0 Transmembrane protein Uds1 PF15456.1 gi|57640537|ref|YP_183015.1| - 4.1 7.4 16.8 7.5 6.5 3.9 2.3 1 1 0 2 2 2 0 Up-regulated During Septation CDC37_N PF03234.9 gi|57640537|ref|YP_183015.1| - 4.5 7.5 15.5 13 6.1 10.8 1.6 1 1 0 1 1 1 0 Cdc37 N terminal kinase binding bZIP_Maf PF03131.12 gi|57640537|ref|YP_183015.1| - 4.5 7.6 14.7 8 6.8 3.2 2.7 1 1 1 2 2 2 0 bZIP Maf transcription factor PilJ PF13675.1 gi|57640537|ref|YP_183015.1| - 4.8 7.5 9.8 95 3.3 6.8 2.2 1 1 0 1 1 1 0 Type IV pili methyl-accepting chemotaxis transducer N-term DUF1664 PF07889.7 gi|57640537|ref|YP_183015.1| - 5 6.9 11.0 15 5.4 3.7 2.9 2 1 0 2 2 2 0 Protein of unknown function (DUF1664) Prominin PF05478.6 gi|57640537|ref|YP_183015.1| - 5.2 4.4 12.6 24 2.2 8.8 1.9 1 1 0 1 1 1 0 Prominin NPV_P10 PF05531.7 gi|57640537|ref|YP_183015.1| - 5.4 7.3 8.7 1.1e+02 3.2 6.0 2.6 1 1 0 1 1 1 0 Nucleopolyhedrovirus P10 protein TMF_DNA_bd PF12329.3 gi|57640537|ref|YP_183015.1| - 5.6 6.8 31.2 1.2 9.0 8.7 3.2 2 1 1 3 3 2 0 TATA element modulatory factor 1 DNA binding CENP-H PF05837.7 gi|57640537|ref|YP_183015.1| - 6.1 7.0 22.3 0.69 10.1 8.1 2.3 1 1 1 2 2 2 0 Centromere protein H (CENP-H) Sulfatase_C PF14707.1 gi|57640537|ref|YP_183015.1| - 8.2 6.7 7.0 23 5.2 0.2 2.2 1 1 1 2 2 2 0 C-terminal region of aryl-sulfatase DUF3972 PF13118.1 gi|57640537|ref|YP_183015.1| - 9.2 6.3 17.0 0.63 10.1 3.0 3.0 2 1 0 3 3 2 0 Protein of unknown function (DUF3972) FAD-SLDH PF12318.3 gi|57640537|ref|YP_183015.1| - 9.4 5.8 7.4 10 5.7 1.4 2.2 1 1 1 2 2 2 0 Membrane bound FAD containing D-sorbitol dehydrogenase Cep57_CLD_2 PF14197.1 gi|57640537|ref|YP_183015.1| - 9.5 6.2 20.9 6.5 6.7 6.9 2.5 1 1 1 2 2 2 0 Centrosome localisation domain of PPC89 PepSY PF03413.14 gi|57640539|ref|YP_183017.1| - 0.0071 16.9 0.4 0.011 16.3 0.3 1.3 1 0 0 1 1 1 1 Peptidase propeptide and YPEB domain fn3 PF00041.16 gi|57640540|ref|YP_183018.1| - 0.34 11.0 7.1 0.096 12.8 0.8 2.7 1 1 2 3 3 3 0 Fibronectin type III domain GPI-anchored PF10342.4 gi|57640540|ref|YP_183018.1| - 3.1 8.3 14.2 0.9 10.0 0.6 3.1 1 1 0 2 2 2 0 Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family Glyco_transf_22 PF03901.12 gi|57640542|ref|YP_183020.1| - 0.051 12.5 0.9 0.052 12.5 0.6 1.1 1 0 0 1 1 1 0 Alg9-like mannosyltransferase family DUF805 PF05656.9 gi|57640542|ref|YP_183020.1| - 0.18 11.6 6.7 0.22 11.3 4.6 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF805) DUF973 PF06157.6 gi|57640542|ref|YP_183020.1| - 0.26 10.2 3.1 0.25 10.2 2.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF973) ABC2_membrane_3 PF12698.2 gi|57640542|ref|YP_183020.1| - 0.43 9.5 7.5 0.57 9.1 5.2 1.2 1 0 0 1 1 1 0 ABC-2 family transporter protein DUF3816 PF12822.2 gi|57640542|ref|YP_183020.1| - 9 6.1 10.4 30 4.4 7.4 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF3816) Tim17 PF02466.14 gi|57640543|ref|YP_183021.1| - 0.03 14.3 1.0 0.092 12.7 0.2 2.0 1 1 1 2 2 2 0 Tim17/Tim22/Tim23/Pmp24 family EamA PF00892.15 gi|57640543|ref|YP_183021.1| - 0.065 13.2 0.0 0.065 13.2 0.0 2.5 2 1 0 2 2 2 0 EamA-like transporter family DUF4396 PF14342.1 gi|57640543|ref|YP_183021.1| - 0.27 11.3 8.3 5.4 7.1 3.7 2.9 2 1 0 2 2 2 0 Domain of unknown function (DUF4396) DUF3902 PF13042.1 gi|57640543|ref|YP_183021.1| - 2 7.6 6.4 1.1 8.5 2.4 2.0 2 1 0 2 2 2 0 Protein of unknown function (DUF3902) DUF4234 PF14018.1 gi|57640543|ref|YP_183021.1| - 3 7.6 4.9 12 5.6 0.0 2.9 3 1 0 3 3 3 0 Domain of unknown function (DUF4234) ApoLp-III PF07464.6 gi|57640544|ref|YP_183022.1| - 0.085 12.8 9.6 5.7 6.9 0.0 2.3 2 0 0 2 2 2 0 Apolipophorin-III precursor (apoLp-III) Rifin_STEVOR PF02009.11 gi|57640544|ref|YP_183022.1| - 1.1 8.8 6.9 3 7.4 0.2 2.2 2 0 0 2 2 2 0 Rifin/stevor family PhoU PF01895.14 gi|57640544|ref|YP_183022.1| - 3.2 8.2 6.4 0.57 10.6 0.5 2.4 2 1 0 2 2 2 0 PhoU domain PEGA PF08308.6 gi|57640545|ref|YP_183023.1| - 9.3e-05 22.1 1.1 0.00075 19.2 0.1 3.0 3 0 0 3 3 3 1 PEGA domain DUF4480 PF13715.1 gi|57640545|ref|YP_183023.1| - 0.00023 21.1 2.7 0.0012 18.8 0.1 3.4 4 1 0 4 4 4 1 Domain of unknown function (DUF4480) CarboxypepD_reg PF13620.1 gi|57640545|ref|YP_183023.1| - 0.0005 20.0 8.4 0.0022 18.0 0.2 4.4 4 1 0 4 4 4 1 Carboxypeptidase regulatory-like domain DUF3244 PF11589.3 gi|57640545|ref|YP_183023.1| - 0.0012 18.4 0.1 0.02 14.5 0.0 2.9 2 0 0 2 2 2 1 Domain of unknown function (DUF3244) LptE PF04390.7 gi|57640545|ref|YP_183023.1| - 0.084 12.6 0.2 0.93 9.2 0.0 2.4 2 0 0 2 2 2 0 Lipopolysaccharide-assembly DUF4203 PF13886.1 gi|57640546|ref|YP_183024.1| - 0.054 12.9 5.4 0.046 13.1 3.2 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4203) RHH_1 PF01402.16 gi|57640547|ref|YP_183025.1| - 0.00036 20.3 0.1 0.0005 19.8 0.0 1.4 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family PSK_trans_fac PF07704.6 gi|57640547|ref|YP_183025.1| - 0.023 15.3 0.0 0.026 15.1 0.0 1.1 1 0 0 1 1 1 0 Rv0623-like transcription factor HicB PF05534.7 gi|57640547|ref|YP_183025.1| - 0.029 13.9 0.0 0.038 13.5 0.0 1.2 1 0 0 1 1 1 0 HicB family ParG PF09274.5 gi|57640547|ref|YP_183025.1| - 0.13 12.1 0.0 0.15 11.9 0.0 1.1 1 0 0 1 1 1 0 ParG Pil1 PF13805.1 gi|57640549|ref|YP_183027.1| - 0.052 12.7 0.1 0.2 10.7 0.0 1.8 2 0 0 2 2 2 0 Eisosome component PIL1 Sp100 PF03172.8 gi|57640549|ref|YP_183027.1| - 0.064 13.2 0.5 2.8 7.9 0.1 2.9 1 1 2 3 3 3 0 Sp100 domain Ribosomal_L37ae PF01780.14 gi|57640550|ref|YP_183028.1| - 6.7e-35 118.8 6.1 7e-35 118.7 4.2 1.0 1 0 0 1 1 1 1 Ribosomal L37ae protein family Zn_Tnp_IS1595 PF12760.2 gi|57640550|ref|YP_183028.1| - 4e-07 29.7 2.4 5.4e-07 29.3 1.7 1.2 1 0 0 1 1 1 1 Transposase zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|57640550|ref|YP_183028.1| - 0.00021 20.8 0.8 0.00029 20.4 0.6 1.3 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Zn-ribbon_8 PF09723.5 gi|57640550|ref|YP_183028.1| - 0.0007 19.4 2.9 0.043 13.7 0.2 2.2 2 0 0 2 2 2 1 Zinc ribbon domain zf-H2C2_2 PF13465.1 gi|57640550|ref|YP_183028.1| - 0.0015 18.6 0.3 0.75 10.1 0.1 2.2 2 0 0 2 2 2 1 Zinc-finger double domain Rep_fac-A_C PF08646.5 gi|57640550|ref|YP_183028.1| - 0.0024 17.5 0.3 0.0027 17.4 0.2 1.1 1 0 0 1 1 1 1 Replication factor-A C terminal domain zf-C2H2_4 PF13894.1 gi|57640550|ref|YP_183028.1| - 0.0036 17.5 1.0 0.74 10.2 0.1 2.3 2 0 0 2 2 2 1 C2H2-type zinc finger Lar_restr_allev PF14354.1 gi|57640550|ref|YP_183028.1| - 0.0038 17.4 1.0 0.0058 16.9 0.7 1.4 1 1 0 1 1 1 1 Restriction alleviation protein Lar Prok-RING_1 PF14446.1 gi|57640550|ref|YP_183028.1| - 0.0062 16.2 0.7 0.0097 15.6 0.5 1.3 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 zf-C2H2 PF00096.21 gi|57640550|ref|YP_183028.1| - 0.013 15.8 0.5 5.8 7.4 0.1 2.3 2 0 0 2 2 2 0 Zinc finger, C2H2 type C1_1 PF00130.17 gi|57640550|ref|YP_183028.1| - 0.013 15.2 1.2 0.017 14.8 0.8 1.1 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) DNA_ligase_ZBD PF03119.11 gi|57640550|ref|YP_183028.1| - 0.02 14.6 0.3 0.034 13.8 0.2 1.5 1 0 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain DUF4379 PF14311.1 gi|57640550|ref|YP_183028.1| - 0.021 14.6 3.8 2.3 8.0 0.3 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4379) Rad50_zn_hook PF04423.9 gi|57640550|ref|YP_183028.1| - 0.021 14.2 0.2 0.036 13.5 0.1 1.5 1 0 0 1 1 1 0 Rad50 zinc hook motif A2L_zn_ribbon PF08792.5 gi|57640550|ref|YP_183028.1| - 0.041 13.3 2.4 0.16 11.4 1.7 1.8 1 1 0 1 1 1 0 A2L zinc ribbon domain ADK_lid PF05191.9 gi|57640550|ref|YP_183028.1| - 0.045 13.4 1.6 2.4 7.9 0.2 2.2 2 0 0 2 2 2 0 Adenylate kinase, active site lid RPA_interact_C PF14768.1 gi|57640550|ref|YP_183028.1| - 0.051 13.9 0.1 0.067 13.5 0.1 1.2 1 0 0 1 1 1 0 Replication protein A interacting C-terminal DZR PF12773.2 gi|57640550|ref|YP_183028.1| - 0.055 13.3 2.0 0.29 10.9 1.5 1.8 1 1 1 2 2 2 0 Double zinc ribbon Prim_Zn_Ribbon PF08273.7 gi|57640550|ref|YP_183028.1| - 0.06 13.4 3.8 0.12 12.4 2.7 1.5 1 1 0 1 1 1 0 Zinc-binding domain of primase-helicase Rubredoxin PF00301.15 gi|57640550|ref|YP_183028.1| - 0.062 13.1 0.8 5.4 6.9 0.0 2.2 2 0 0 2 2 2 0 Rubredoxin zf-ribbon_3 PF13248.1 gi|57640550|ref|YP_183028.1| - 0.066 12.4 2.6 2.7 7.3 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain ProRS-C_1 PF09180.6 gi|57640550|ref|YP_183028.1| - 0.066 13.1 0.0 0.1 12.5 0.0 1.4 1 0 0 1 1 1 0 Prolyl-tRNA synthetase, C-terminal TF_Zn_Ribbon PF08271.7 gi|57640550|ref|YP_183028.1| - 0.067 12.5 0.1 0.11 11.8 0.1 1.3 1 0 0 1 1 1 0 TFIIB zinc-binding NOB1_Zn_bind PF08772.6 gi|57640550|ref|YP_183028.1| - 0.1 12.4 2.5 0.13 12.0 0.1 2.0 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zf-NADH-PPase PF09297.6 gi|57640550|ref|YP_183028.1| - 0.12 11.9 2.8 0.24 10.9 2.0 1.5 1 0 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain DUF1610 PF07754.6 gi|57640550|ref|YP_183028.1| - 0.13 12.4 3.2 1.3 9.2 0.2 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) Ogr_Delta PF04606.7 gi|57640550|ref|YP_183028.1| - 0.16 11.6 4.3 9.5 5.9 3.0 2.2 1 1 0 1 1 1 0 Ogr/Delta-like zinc finger zf-C2HC_2 PF13913.1 gi|57640550|ref|YP_183028.1| - 0.21 11.3 4.5 2.6 7.8 0.4 2.3 2 0 0 2 2 2 0 zinc-finger of a C2HC-type zf-BED PF02892.10 gi|57640550|ref|YP_183028.1| - 0.24 11.1 2.0 2.2 8.1 0.1 2.1 1 1 1 2 2 2 0 BED zinc finger Sgf11 PF08209.6 gi|57640550|ref|YP_183028.1| - 0.32 10.3 2.4 1.3 8.4 0.1 2.6 3 0 0 3 3 3 0 Sgf11 (transcriptional regulation protein) Zn_ribbon_recom PF13408.1 gi|57640550|ref|YP_183028.1| - 0.32 11.3 2.9 2.6 8.3 1.8 2.1 1 1 1 2 2 2 0 Recombinase zinc beta ribbon domain zinc_ribbon_2 PF13240.1 gi|57640550|ref|YP_183028.1| - 0.33 10.4 3.8 9.1 5.9 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-C2H2_6 PF13912.1 gi|57640550|ref|YP_183028.1| - 0.38 10.7 3.2 5.3 7.0 0.1 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger Nudix_N_2 PF14803.1 gi|57640550|ref|YP_183028.1| - 0.53 10.0 3.3 2.9 7.6 0.1 2.4 2 0 0 2 2 2 0 Nudix N-terminal zf-tcix PF14952.1 gi|57640550|ref|YP_183028.1| - 0.85 9.0 6.3 0.27 10.6 0.4 2.2 1 1 1 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding zf-RanBP PF00641.13 gi|57640550|ref|YP_183028.1| - 1.9 7.6 5.2 1 8.5 0.7 2.1 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others zf-ISL3 PF14690.1 gi|57640550|ref|YP_183028.1| - 3.4 7.7 7.6 0.8 9.7 0.6 2.3 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DNA_RNApol_7kD PF03604.8 gi|57640551|ref|YP_183029.1| - 1.1e-10 40.7 3.6 1.6e-10 40.2 2.5 1.2 1 0 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit Zn-ribbon_8 PF09723.5 gi|57640551|ref|YP_183029.1| - 2e-06 27.6 0.7 2.7e-06 27.2 0.5 1.2 1 0 0 1 1 1 1 Zinc ribbon domain zinc_ribbon_2 PF13240.1 gi|57640551|ref|YP_183029.1| - 1.6e-05 24.1 1.2 4.4e-05 22.8 0.8 1.7 1 1 0 1 1 1 1 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|57640551|ref|YP_183029.1| - 5.9e-05 22.1 2.1 0.00035 19.6 1.6 1.8 1 1 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|57640551|ref|YP_183029.1| - 0.00026 20.7 0.3 0.00033 20.4 0.2 1.3 1 0 0 1 1 1 1 Double zinc ribbon Desulfoferrod_N PF06397.7 gi|57640551|ref|YP_183029.1| - 0.00038 19.7 0.5 0.006 15.9 0.0 2.0 2 0 0 2 2 2 1 Desulfoferrodoxin, N-terminal domain Zn_Tnp_IS1595 PF12760.2 gi|57640551|ref|YP_183029.1| - 0.00045 19.9 2.3 0.083 12.7 0.1 2.1 2 0 0 2 2 2 1 Transposase zinc-ribbon domain HypA PF01155.14 gi|57640551|ref|YP_183029.1| - 0.00056 19.5 0.4 0.00062 19.4 0.3 1.1 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family zf-ISL3 PF14690.1 gi|57640551|ref|YP_183029.1| - 0.0007 19.5 3.0 0.015 15.2 0.7 2.1 2 0 0 2 2 2 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Cys_rich_CPXG PF14255.1 gi|57640551|ref|YP_183029.1| - 0.0014 18.4 0.5 0.32 10.8 0.1 2.1 2 0 0 2 2 2 1 Cysteine-rich CPXCG zinc_ribbon_5 PF13719.1 gi|57640551|ref|YP_183029.1| - 0.0029 17.1 3.1 0.022 14.3 2.1 2.0 1 1 0 1 1 1 1 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|57640551|ref|YP_183029.1| - 0.0032 16.7 1.9 0.0078 15.5 1.4 1.6 1 1 0 1 1 1 1 TFIIB zinc-binding DUF329 PF03884.9 gi|57640551|ref|YP_183029.1| - 0.0035 16.8 1.4 1 8.9 0.1 2.1 1 1 1 2 2 2 1 Domain of unknown function (DUF329) zf-C3HC4_3 PF13920.1 gi|57640551|ref|YP_183029.1| - 0.0046 16.6 0.6 0.0057 16.2 0.4 1.2 1 0 0 1 1 1 1 Zinc finger, C3HC4 type (RING finger) Sgf11 PF08209.6 gi|57640551|ref|YP_183029.1| - 0.0046 16.2 1.2 1.5 8.2 0.1 2.2 2 0 0 2 2 2 1 Sgf11 (transcriptional regulation protein) zinc_ribbon_4 PF13717.1 gi|57640551|ref|YP_183029.1| - 0.0048 16.5 3.4 0.051 13.2 2.4 2.0 1 1 1 2 2 2 1 zinc-ribbon domain TFIIS_C PF01096.13 gi|57640551|ref|YP_183029.1| - 0.0049 16.4 1.5 0.41 10.3 0.1 2.1 2 0 0 2 2 2 1 Transcription factor S-II (TFIIS) CpXC PF14353.1 gi|57640551|ref|YP_183029.1| - 0.0051 16.7 1.0 1.9 8.4 0.0 2.0 1 1 1 2 2 2 1 CpXC protein zf-C4_Topoisom PF01396.14 gi|57640551|ref|YP_183029.1| - 0.011 15.2 1.8 0.14 11.7 0.1 2.1 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger Nudix_N_2 PF14803.1 gi|57640551|ref|YP_183029.1| - 0.014 15.1 0.5 0.38 10.4 0.2 2.2 1 1 1 2 2 2 0 Nudix N-terminal Zn_ribbon_recom PF13408.1 gi|57640551|ref|YP_183029.1| - 0.014 15.6 1.6 0.56 10.5 0.1 2.1 2 0 0 2 2 2 0 Recombinase zinc beta ribbon domain OrfB_Zn_ribbon PF07282.6 gi|57640551|ref|YP_183029.1| - 0.015 14.9 1.2 0.026 14.1 0.8 1.4 1 1 0 1 1 1 0 Putative transposase DNA-binding domain YhfH PF14149.1 gi|57640551|ref|YP_183029.1| - 0.015 15.0 0.8 1.1 9.1 0.1 2.1 2 0 0 2 2 2 0 YhfH-like protein zf-RING_3 PF14369.1 gi|57640551|ref|YP_183029.1| - 0.015 15.2 0.3 0.025 14.5 0.2 1.4 1 0 0 1 1 1 0 zinc-finger DNA_ligase_ZBD PF03119.11 gi|57640551|ref|YP_183029.1| - 0.018 14.7 0.2 0.018 14.7 0.2 2.4 3 0 0 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain Prok-RING_1 PF14446.1 gi|57640551|ref|YP_183029.1| - 0.024 14.3 2.3 0.21 11.3 1.9 1.9 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 Cren7 PF11520.3 gi|57640551|ref|YP_183029.1| - 0.027 14.1 0.1 4.9 6.8 0.0 2.1 1 1 1 2 2 2 0 Chromatin protein Cren7 DUF951 PF06107.6 gi|57640551|ref|YP_183029.1| - 0.029 13.9 0.4 3.5 7.2 0.0 2.0 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF951) zf-FCS PF06467.9 gi|57640551|ref|YP_183029.1| - 0.035 13.7 0.2 0.4 10.3 0.0 2.0 2 0 0 2 2 2 0 MYM-type Zinc finger with FCS sequence motif DUF2296 PF10058.4 gi|57640551|ref|YP_183029.1| - 0.041 13.6 0.9 3.6 7.3 0.1 2.1 2 0 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) zf-CHCC PF10276.4 gi|57640551|ref|YP_183029.1| - 0.042 13.6 0.0 0.042 13.6 0.0 1.6 2 0 0 2 2 1 0 Zinc-finger domain RNHCP PF12647.2 gi|57640551|ref|YP_183029.1| - 0.044 13.6 0.5 0.055 13.2 0.4 1.3 1 1 0 1 1 1 0 RNHCP domain Ribosomal_S27e PF01667.12 gi|57640551|ref|YP_183029.1| - 0.053 13.0 1.1 0.14 11.7 0.8 1.7 1 1 0 1 1 1 0 Ribosomal protein S27 Zn_Tnp_IS91 PF14319.1 gi|57640551|ref|YP_183029.1| - 0.055 12.9 0.2 0.055 12.9 0.1 1.1 1 0 0 1 1 1 0 Transposase zinc-binding domain SprT-like PF10263.4 gi|57640551|ref|YP_183029.1| - 0.058 13.0 0.6 0.067 12.8 0.4 1.1 1 0 0 1 1 1 0 SprT-like family zf-CHY PF05495.7 gi|57640551|ref|YP_183029.1| - 0.063 13.4 0.2 0.066 13.3 0.1 1.2 1 0 0 1 1 1 0 CHY zinc finger DUF2072 PF09845.4 gi|57640551|ref|YP_183029.1| - 0.065 13.1 0.2 0.065 13.1 0.1 1.1 1 0 0 1 1 1 0 Zn-ribbon containing protein (DUF2072) zf-NADH-PPase PF09297.6 gi|57640551|ref|YP_183029.1| - 0.065 12.7 1.7 0.65 9.5 1.2 2.0 1 1 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain FYDLN_acid PF09538.5 gi|57640551|ref|YP_183029.1| - 0.075 13.6 0.6 0.2 12.2 0.4 1.6 1 1 0 1 1 1 0 Protein of unknown function (FYDLN_acid) Arc_trans_TRASH PF08394.5 gi|57640551|ref|YP_183029.1| - 0.081 13.0 0.2 1.3 9.2 0.0 2.1 2 0 0 2 2 2 0 Archaeal TRASH domain zf-C2H2 PF00096.21 gi|57640551|ref|YP_183029.1| - 0.084 13.2 3.1 3.8 8.0 0.2 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type GFA PF04828.9 gi|57640551|ref|YP_183029.1| - 0.086 12.7 0.8 1.4 8.9 0.0 2.0 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme zf-C2H2_4 PF13894.1 gi|57640551|ref|YP_183029.1| - 0.089 13.1 0.4 3.4 8.2 0.1 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger zf-MYND PF01753.13 gi|57640551|ref|YP_183029.1| - 0.091 12.6 1.3 0.12 12.2 0.9 1.2 1 0 0 1 1 1 0 MYND finger Lar_restr_allev PF14354.1 gi|57640551|ref|YP_183029.1| - 0.095 13.0 1.2 0.32 11.3 0.9 1.8 1 1 0 1 1 1 0 Restriction alleviation protein Lar UPF0547 PF10571.4 gi|57640551|ref|YP_183029.1| - 0.097 12.3 4.8 1.9 8.2 3.6 2.1 1 1 2 3 3 3 0 Uncharacterised protein family UPF0547 NOB1_Zn_bind PF08772.6 gi|57640551|ref|YP_183029.1| - 0.097 12.5 0.5 0.12 12.1 0.3 1.3 1 1 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like zf-HIT PF04438.11 gi|57640551|ref|YP_183029.1| - 0.097 12.3 2.9 1.6 8.4 0.1 2.1 2 0 0 2 2 2 0 HIT zinc finger FYVE PF01363.16 gi|57640551|ref|YP_183029.1| - 0.1 12.5 0.3 0.1 12.5 0.2 1.1 1 0 0 1 1 1 0 FYVE zinc finger IBR PF01485.16 gi|57640551|ref|YP_183029.1| - 0.11 12.4 0.5 0.15 11.9 0.4 1.3 1 0 0 1 1 1 0 IBR domain Zn_Tnp_IS1 PF03811.8 gi|57640551|ref|YP_183029.1| - 0.11 11.9 0.7 3 7.4 0.0 2.2 2 0 0 2 2 2 0 InsA N-terminal domain zf-C2HC5 PF06221.8 gi|57640551|ref|YP_183029.1| - 0.13 11.9 1.0 0.23 11.2 0.7 1.5 1 1 0 1 1 1 0 Putative zinc finger motif, C2HC5-type zf-H2C2_2 PF13465.1 gi|57640551|ref|YP_183029.1| - 0.14 12.5 1.7 7.7 7.0 0.1 2.2 2 0 0 2 2 2 0 Zinc-finger double domain zf-BED PF02892.10 gi|57640551|ref|YP_183029.1| - 0.14 11.9 3.9 1.2 9.0 0.1 2.1 1 1 1 2 2 2 0 BED zinc finger DUF3268 PF11672.3 gi|57640551|ref|YP_183029.1| - 0.15 12.1 1.1 5.4 7.1 0.0 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3268) Prim_Zn_Ribbon PF08273.7 gi|57640551|ref|YP_183029.1| - 0.15 12.1 0.9 0.98 9.5 0.1 2.0 2 0 0 2 2 2 0 Zinc-binding domain of primase-helicase A2L_zn_ribbon PF08792.5 gi|57640551|ref|YP_183029.1| - 0.16 11.4 2.3 2.5 7.6 1.4 2.0 1 1 1 2 2 2 0 A2L zinc ribbon domain zf-RING_5 PF14634.1 gi|57640551|ref|YP_183029.1| - 0.18 11.5 0.9 0.25 11.1 0.6 1.2 1 0 0 1 1 1 0 zinc-RING finger domain zf-Di19 PF05605.7 gi|57640551|ref|YP_183029.1| - 0.2 11.8 2.4 0.94 9.6 0.3 2.0 1 1 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding TerY-C PF15616.1 gi|57640551|ref|YP_183029.1| - 0.25 11.2 1.2 7.3 6.5 0.1 1.8 1 1 1 2 2 2 0 TerY-C metal binding domain Tnp_zf-ribbon_2 PF13842.1 gi|57640551|ref|YP_183029.1| - 0.29 11.5 1.9 1.8 9.0 0.1 2.1 2 0 0 2 2 2 0 DDE_Tnp_1-like zinc-ribbon PhnA_Zn_Ribbon PF08274.7 gi|57640551|ref|YP_183029.1| - 0.32 10.8 1.7 16 5.3 0.0 2.1 1 1 0 2 2 2 0 PhnA Zinc-Ribbon DUF1610 PF07754.6 gi|57640551|ref|YP_183029.1| - 0.37 10.9 3.4 4.1 7.6 0.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) DUF164 PF02591.10 gi|57640551|ref|YP_183029.1| - 0.47 10.3 3.0 1.8 8.4 0.2 2.1 1 1 1 2 2 2 0 Putative zinc ribbon domain zf-LSD1 PF06943.7 gi|57640551|ref|YP_183029.1| - 0.5 10.0 4.5 1.4 8.6 0.3 2.3 2 0 0 2 2 2 0 LSD1 zinc finger PyrI_C PF02748.10 gi|57640551|ref|YP_183029.1| - 0.53 9.7 3.8 1.2 8.6 0.1 2.0 1 1 1 2 2 2 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain Cys_rich_KTR PF14205.1 gi|57640551|ref|YP_183029.1| - 0.59 9.6 2.9 1.1 8.7 0.2 2.0 1 1 1 2 2 2 0 Cysteine-rich KTR Ogr_Delta PF04606.7 gi|57640551|ref|YP_183029.1| - 0.67 9.6 3.1 1 9.0 0.1 2.1 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger zf-tcix PF14952.1 gi|57640551|ref|YP_183029.1| - 0.82 9.0 4.9 8.1 5.8 0.0 2.7 3 0 0 3 3 3 0 Putative treble-clef, zinc-finger, Zn-binding zf-C2HC_2 PF13913.1 gi|57640551|ref|YP_183029.1| - 1.3 8.7 4.0 2.4 7.9 0.3 2.1 2 0 0 2 2 2 0 zinc-finger of a C2HC-type Mu-like_Com PF10122.4 gi|57640551|ref|YP_183029.1| - 2.3 7.3 4.8 4.9 6.3 0.2 1.9 1 1 1 2 2 2 0 Mu-like prophage protein Com DUF35_N PF12172.3 gi|57640551|ref|YP_183029.1| - 3.3 7.7 7.2 10 6.1 3.6 2.3 1 1 1 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-CCHC PF00098.18 gi|57640551|ref|YP_183029.1| - 4.8 7.2 7.3 9.4 6.3 0.8 2.2 2 0 0 2 2 2 0 Zinc knuckle Brix PF04427.13 gi|57640552|ref|YP_183030.1| - 2.2e-17 63.3 0.0 2.7e-17 63.0 0.0 1.2 1 0 0 1 1 1 1 Brix domain MNHE PF01899.11 gi|57640553|ref|YP_183031.1| - 6.3e-41 139.5 2.4 8.1e-41 139.2 1.7 1.1 1 0 0 1 1 1 1 Na+/H+ ion antiporter subunit PRA1 PF03208.14 gi|57640553|ref|YP_183031.1| - 0.18 11.1 4.4 0.27 10.5 3.1 1.2 1 0 0 1 1 1 0 PRA1 family protein MrpF_PhaF PF04066.8 gi|57640554|ref|YP_183032.1| - 6.3e-14 51.9 6.7 6.3e-14 51.9 4.6 1.6 2 0 0 2 2 2 1 Multiple resistance and pH regulation protein F (MrpF / PhaF) PhaG_MnhG_YufB PF03334.9 gi|57640555|ref|YP_183033.1| - 6.3e-25 87.0 6.9 7.4e-25 86.8 4.8 1.1 1 0 0 1 1 1 1 Na+/H+ antiporter subunit DUF4040 PF13244.1 gi|57640556|ref|YP_183034.1| - 1.7e-11 43.8 7.9 2.1e-11 43.6 5.5 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4040) DUF939 PF06081.6 gi|57640556|ref|YP_183034.1| - 0.035 13.9 5.8 0.042 13.7 4.0 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF939) BCLP PF12304.3 gi|57640556|ref|YP_183034.1| - 1.8 7.9 5.6 2.2 7.6 3.9 1.1 1 0 0 1 1 1 0 Beta-casein like protein DUF2459 PF09601.5 gi|57640557|ref|YP_183035.1| - 0.025 14.3 0.1 0.032 13.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2459) MnhB PF04039.8 gi|57640557|ref|YP_183035.1| - 0.091 12.8 0.2 0.11 12.5 0.1 1.1 1 0 0 1 1 1 0 Domain related to MnhB subunit of Na+/H+ antiporter MnhB PF04039.8 gi|57640558|ref|YP_183036.1| - 2.1e-26 92.4 13.5 2.3e-26 92.2 9.3 1.0 1 0 0 1 1 1 1 Domain related to MnhB subunit of Na+/H+ antiporter DUF2105 PF09878.4 gi|57640558|ref|YP_183036.1| - 0.22 11.0 7.1 0.29 10.6 4.9 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2105) TctB PF07331.6 gi|57640558|ref|YP_183036.1| - 0.67 9.6 10.9 1 9.0 7.5 1.4 1 1 0 1 1 1 0 Tripartite tricarboxylate transporter TctB family DUF3180 PF11377.3 gi|57640558|ref|YP_183036.1| - 1.2 8.9 4.6 2 8.3 3.2 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3180) Oxidored_q2 PF00420.19 gi|57640559|ref|YP_183037.1| - 1.3e-16 59.9 1.1 1.6e-16 59.6 0.7 1.0 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DUF4418 PF14387.1 gi|57640559|ref|YP_183037.1| - 0.00036 20.2 0.9 0.00047 19.8 0.6 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4418) DUF2108 PF09881.4 gi|57640559|ref|YP_183037.1| - 0.012 15.3 3.7 0.012 15.3 2.5 1.8 1 1 1 2 2 2 0 Predicted membrane protein (DUF2108) DUF4040 PF13244.1 gi|57640559|ref|YP_183037.1| - 0.81 9.7 6.2 1.6 8.7 0.2 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4040) DUF2107 PF09880.4 gi|57640559|ref|YP_183037.1| - 0.86 9.5 7.6 0.11 12.4 0.8 2.1 2 0 0 2 2 2 0 Predicted membrane protein (DUF2107) SdpI PF13630.1 gi|57640559|ref|YP_183037.1| - 9.9 5.9 6.6 1.7 8.4 1.3 1.8 2 0 0 2 2 2 0 SdpI/YhfL protein family Oxidored_q1 PF00361.15 gi|57640560|ref|YP_183038.1| - 1.8e-54 184.8 13.2 1.8e-54 184.8 9.2 2.0 3 0 0 3 3 3 1 NADH-Ubiquinone/plastoquinone (complex I), various chains NADHdeh_related PF10125.4 gi|57640560|ref|YP_183038.1| - 1.9e-07 30.4 2.4 1.9e-07 30.4 1.6 2.5 2 0 0 2 2 2 2 NADH dehydrogenase I, subunit N related protein ACT PF01842.20 gi|57640561|ref|YP_183039.1| - 2.7e-11 42.7 0.2 4.4e-11 42.0 0.1 1.3 1 0 0 1 1 1 1 ACT domain ACT_4 PF13291.1 gi|57640561|ref|YP_183039.1| - 9.2e-05 22.7 0.0 0.00015 22.0 0.0 1.3 1 0 0 1 1 1 1 ACT domain ACT_7 PF13840.1 gi|57640561|ref|YP_183039.1| - 0.06 12.8 0.0 0.12 11.9 0.0 1.5 1 0 0 1 1 1 0 ACT domain ACT_6 PF13740.1 gi|57640561|ref|YP_183039.1| - 0.071 12.8 0.1 0.36 10.5 0.0 2.1 1 1 0 1 1 1 0 ACT domain Na_H_Exchanger PF00999.16 gi|57640562|ref|YP_183040.1| - 1.6e-32 112.4 42.1 1.9e-32 112.2 29.2 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family FBPase_2 PF06874.6 gi|57640563|ref|YP_183041.1| - 0.0052 14.9 0.2 0.012 13.7 0.2 1.5 1 0 0 1 1 1 1 Firmicute fructose-1,6-bisphosphatase HSBP1 PF06825.7 gi|57640563|ref|YP_183041.1| - 0.0053 16.3 0.0 0.2 11.2 0.0 3.3 3 1 0 3 3 2 1 Heat shock factor binding protein 1 Transposase_22 PF02994.9 gi|57640563|ref|YP_183041.1| - 0.0059 15.1 5.4 0.0059 15.1 3.8 2.8 2 1 1 3 3 3 1 L1 transposable element Baculo_PEP_C PF04513.7 gi|57640563|ref|YP_183041.1| - 0.0085 15.9 1.6 0.66 9.7 0.1 3.1 2 1 1 3 3 3 1 Baculovirus polyhedron envelope protein, PEP, C terminus TMF_DNA_bd PF12329.3 gi|57640563|ref|YP_183041.1| - 0.02 14.6 6.1 0.02 14.6 4.2 4.8 2 1 2 4 4 3 0 TATA element modulatory factor 1 DNA binding Spectrin PF00435.16 gi|57640563|ref|YP_183041.1| - 0.023 14.9 15.6 0.7 10.2 5.2 3.6 2 1 0 3 3 3 0 Spectrin repeat Prefoldin PF02996.12 gi|57640563|ref|YP_183041.1| - 0.023 14.3 17.7 0.12 11.9 0.3 4.2 4 0 0 4 4 4 0 Prefoldin subunit FlxA PF14282.1 gi|57640563|ref|YP_183041.1| - 0.025 14.5 1.3 0.025 14.5 0.9 3.2 2 1 2 4 4 4 0 FlxA-like protein Prominin PF05478.6 gi|57640563|ref|YP_183041.1| - 0.029 11.9 7.1 0.1 10.1 5.0 1.6 1 1 0 1 1 1 0 Prominin DUF948 PF06103.6 gi|57640563|ref|YP_183041.1| - 0.034 13.9 1.8 10 6.0 0.0 3.6 3 1 0 3 3 3 0 Bacterial protein of unknown function (DUF948) Syntaxin-6_N PF09177.6 gi|57640563|ref|YP_183041.1| - 0.12 12.7 16.9 0.032 14.6 4.6 3.7 2 1 2 4 4 4 0 Syntaxin 6, N-terminal MM_CoA_mutase PF01642.17 gi|57640563|ref|YP_183041.1| - 0.14 10.2 1.1 0.21 9.6 0.7 1.2 1 0 0 1 1 1 0 Methylmalonyl-CoA mutase Stanniocalcin PF03298.8 gi|57640563|ref|YP_183041.1| - 0.14 11.1 0.4 0.26 10.2 0.2 1.3 1 0 0 1 1 1 0 Stanniocalcin family DUF3584 PF12128.3 gi|57640563|ref|YP_183041.1| - 0.18 9.0 18.5 0.019 12.3 8.8 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3584) Phage_lysis PF03245.8 gi|57640563|ref|YP_183041.1| - 0.28 11.1 6.6 0.28 11.1 0.8 2.6 2 1 0 2 2 2 0 Bacteriophage Rz lysis protein Reo_sigmaC PF04582.7 gi|57640563|ref|YP_183041.1| - 0.5 9.4 1.4 1.4 8.0 0.5 1.8 1 1 2 3 3 3 0 Reovirus sigma C capsid protein GLTP PF08718.6 gi|57640563|ref|YP_183041.1| - 1.1 9.3 6.5 4.1 7.4 0.3 2.5 1 1 0 2 2 2 0 Glycolipid transfer protein (GLTP) IZUMO PF15005.1 gi|57640563|ref|YP_183041.1| - 1.1 9.2 6.6 1.7 8.6 3.3 2.2 1 1 0 1 1 1 0 Izumo sperm-egg fusion DUF3373 PF11853.3 gi|57640563|ref|YP_183041.1| - 1.1 7.6 3.5 5.2 5.4 2.4 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF3373) Fib_alpha PF08702.5 gi|57640563|ref|YP_183041.1| - 1.3 9.1 12.4 2.5 8.2 2.7 3.1 2 1 1 3 3 3 0 Fibrinogen alpha/beta chain family Orbi_VP5 PF00901.12 gi|57640563|ref|YP_183041.1| - 2.1 6.4 16.5 0.63 8.1 8.1 1.9 2 0 0 2 2 2 0 Orbivirus outer capsid protein VP5 T5orf172 PF10544.4 gi|57640563|ref|YP_183041.1| - 2.3 8.6 7.8 4.3 7.7 4.0 2.6 2 1 0 2 2 1 0 T5orf172 domain ACCA PF03255.9 gi|57640563|ref|YP_183041.1| - 2.7 7.5 18.3 1.8 8.1 0.9 3.9 2 1 1 4 4 4 0 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit AATF-Che1 PF13339.1 gi|57640563|ref|YP_183041.1| - 2.8 8.0 19.5 0.57 10.3 2.3 3.1 2 1 1 3 3 3 0 Apoptosis antagonizing transcription factor Cob_adeno_trans PF01923.13 gi|57640563|ref|YP_183041.1| - 3.7 7.2 9.4 5.8 6.6 1.6 3.1 2 1 1 3 3 3 0 Cobalamin adenosyltransferase DUF1664 PF07889.7 gi|57640563|ref|YP_183041.1| - 4.4 7.1 13.0 0.85 9.4 1.3 3.3 2 1 1 3 3 3 0 Protein of unknown function (DUF1664) COG5 PF10392.4 gi|57640563|ref|YP_183041.1| - 4.6 7.2 14.6 4 7.4 0.2 3.6 2 1 2 4 4 4 0 Golgi transport complex subunit 5 Wx5_PLAF3D7 PF09688.5 gi|57640563|ref|YP_183041.1| - 4.7 7.1 8.8 5.1 7.0 0.6 2.6 2 0 0 2 2 2 0 Protein of unknown function (Wx5_PLAF3D7) Bacillus_HBL PF05791.6 gi|57640563|ref|YP_183041.1| - 5 6.4 11.4 3.8 6.8 2.2 2.6 1 1 2 3 3 3 0 Bacillus haemolytic enterotoxin (HBL) Mod_r PF07200.8 gi|57640563|ref|YP_183041.1| - 6 6.7 27.6 9.7 6.0 9.5 3.4 2 1 1 3 3 3 0 Modifier of rudimentary (Mod(r)) protein CorA PF01544.13 gi|57640563|ref|YP_183041.1| - 8.5 5.3 23.5 1.2 8.1 2.8 3.4 2 1 1 3 3 3 0 CorA-like Mg2+ transporter protein Syntaxin PF00804.20 gi|57640563|ref|YP_183041.1| - 9.3 6.4 22.2 1e+02 3.1 0.3 4.1 2 2 1 3 3 3 0 Syntaxin CheW PF01584.14 gi|57640564|ref|YP_183042.1| - 3.8e-37 126.8 0.5 4.5e-37 126.5 0.4 1.0 1 0 0 1 1 1 1 CheW-like domain MCPsignal PF00015.16 gi|57640565|ref|YP_183043.1| - 2.2e-50 171.1 38.6 9.9e-48 162.5 18.9 2.1 1 1 1 2 2 2 2 Methyl-accepting chemotaxis protein (MCP) signalling domain Baculo_PEP_C PF04513.7 gi|57640565|ref|YP_183043.1| - 3.7e-07 30.0 27.1 0.00062 19.5 2.2 4.2 1 1 3 4 4 4 3 Baculovirus polyhedron envelope protein, PEP, C terminus DUF948 PF06103.6 gi|57640565|ref|YP_183043.1| - 3e-06 26.9 24.3 0.03 14.1 0.4 5.3 2 2 3 5 5 5 3 Bacterial protein of unknown function (DUF948) Laminin_II PF06009.7 gi|57640565|ref|YP_183043.1| - 1.2e-05 25.1 30.0 0.00063 19.5 2.4 4.2 1 1 2 3 3 3 1 Laminin Domain II NPV_P10 PF05531.7 gi|57640565|ref|YP_183043.1| - 1.5e-05 25.1 24.2 0.086 13.0 1.5 5.8 2 2 2 4 4 4 1 Nucleopolyhedrovirus P10 protein Reo_sigmaC PF04582.7 gi|57640565|ref|YP_183043.1| - 3.3e-05 23.2 23.0 0.018 14.2 5.6 2.7 1 1 2 3 3 3 2 Reovirus sigma C capsid protein AAA_13 PF13166.1 gi|57640565|ref|YP_183043.1| - 0.00011 20.8 26.6 0.0038 15.7 9.9 2.0 1 1 0 2 2 2 2 AAA domain Spc7 PF08317.6 gi|57640565|ref|YP_183043.1| - 0.00017 20.3 27.1 0.001 17.7 8.5 3.1 1 1 2 3 3 3 1 Spc7 kinetochore protein Fib_alpha PF08702.5 gi|57640565|ref|YP_183043.1| - 0.0002 21.5 19.8 0.006 16.7 2.4 4.2 2 2 1 3 3 3 1 Fibrinogen alpha/beta chain family Syntaxin_2 PF14523.1 gi|57640565|ref|YP_183043.1| - 0.00023 21.1 17.9 0.14 12.2 0.5 5.3 1 1 3 5 5 5 2 Syntaxin-like protein PilJ PF13675.1 gi|57640565|ref|YP_183043.1| - 0.00095 19.4 11.5 1.1 9.6 1.0 5.4 1 1 3 4 4 4 1 Type IV pili methyl-accepting chemotaxis transducer N-term Seryl_tRNA_N PF02403.17 gi|57640565|ref|YP_183043.1| - 0.0017 18.3 26.1 0.74 9.8 3.2 4.5 1 1 2 4 4 4 2 Seryl-tRNA synthetase N-terminal domain DUF812 PF05667.6 gi|57640565|ref|YP_183043.1| - 0.003 16.1 28.5 0.012 14.1 9.2 2.1 1 1 1 2 2 2 2 Protein of unknown function (DUF812) DUF3407 PF11887.3 gi|57640565|ref|YP_183043.1| - 0.0032 16.8 10.6 0.042 13.1 1.5 2.6 2 1 0 2 2 2 2 Protein of unknown function (DUF3407) RmuC PF02646.11 gi|57640565|ref|YP_183043.1| - 0.0045 15.8 22.2 0.074 11.8 1.4 4.5 2 2 1 4 4 4 1 RmuC family Laminin_I PF06008.9 gi|57640565|ref|YP_183043.1| - 0.005 16.2 27.3 0.073 12.3 4.1 4.2 2 2 2 4 4 4 1 Laminin Domain I Snapin_Pallidin PF14712.1 gi|57640565|ref|YP_183043.1| - 0.0057 16.9 17.6 0.11 12.8 1.8 4.8 2 2 2 4 4 4 1 Snapin/Pallidin NAAA-beta PF15508.1 gi|57640565|ref|YP_183043.1| - 0.0065 16.7 6.5 0.79 10.1 0.3 4.0 3 1 1 4 4 3 1 beta subunit of N-acylethanolamine-hydrolyzing acid amidase EzrA PF06160.7 gi|57640565|ref|YP_183043.1| - 0.012 13.8 26.7 0.29 9.2 18.7 2.6 1 1 0 1 1 1 0 Septation ring formation regulator, EzrA V_ATPase_I PF01496.14 gi|57640565|ref|YP_183043.1| - 0.014 13.2 15.5 0.02 12.7 10.8 1.2 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family DUF2400 PF09674.5 gi|57640565|ref|YP_183043.1| - 0.016 14.9 6.8 0.74 9.4 1.1 2.7 2 1 0 2 2 2 0 Protein of unknown function (DUF2400) Filo_VP35 PF02097.10 gi|57640565|ref|YP_183043.1| - 0.016 14.3 12.6 0.12 11.4 0.8 2.7 2 1 0 2 2 2 0 Filoviridae VP35 BLOC1_2 PF10046.4 gi|57640565|ref|YP_183043.1| - 0.02 15.0 27.1 1.1 9.4 1.6 5.3 2 2 2 5 5 5 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 IncA PF04156.9 gi|57640565|ref|YP_183043.1| - 0.02 14.4 23.3 7.3e+03 -3.7 16.1 3.9 1 1 0 1 1 0 0 IncA protein PPE PF00823.14 gi|57640565|ref|YP_183043.1| - 0.021 14.6 5.1 0.23 11.2 0.1 3.0 1 1 0 2 2 2 0 PPE family WXG100 PF06013.7 gi|57640565|ref|YP_183043.1| - 0.029 14.3 19.9 0.73 9.8 2.0 5.9 2 2 3 5 5 5 0 Proteins of 100 residues with WXG DUF869 PF05911.6 gi|57640565|ref|YP_183043.1| - 0.033 12.4 25.3 0.47 8.6 8.0 2.1 1 1 1 2 2 2 0 Plant protein of unknown function (DUF869) MutS_III PF05192.13 gi|57640565|ref|YP_183043.1| - 0.033 13.9 10.7 1.8 8.2 7.3 2.5 1 1 0 1 1 1 0 MutS domain III DUF3087 PF11286.3 gi|57640565|ref|YP_183043.1| - 0.04 13.1 1.8 0.14 11.4 1.3 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF3087) Lebercilin PF15619.1 gi|57640565|ref|YP_183043.1| - 0.06 12.7 13.4 0.57 9.5 5.5 2.5 2 1 0 2 2 2 0 Ciliary protein causing Leber congenital amaurosis disease APG17 PF04108.7 gi|57640565|ref|YP_183043.1| - 0.061 12.1 21.7 1.6 7.3 13.7 3.8 1 1 1 2 2 2 0 Autophagy protein Apg17 DASH_Dam1 PF08653.5 gi|57640565|ref|YP_183043.1| - 0.084 12.6 9.4 11 5.8 0.2 5.2 3 2 2 5 5 4 0 DASH complex subunit Dam1 AAA_23 PF13476.1 gi|57640565|ref|YP_183043.1| - 0.13 12.6 14.0 0.54 10.5 2.6 2.3 1 1 1 2 2 2 0 AAA domain DUF3422 PF11902.3 gi|57640565|ref|YP_183043.1| - 0.13 11.1 8.0 0.58 8.9 0.5 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3422) IQ-like PF15157.1 gi|57640565|ref|YP_183043.1| - 0.17 12.1 3.4 0.19 11.9 0.8 2.2 2 0 0 2 2 1 0 IQ-like DUF1664 PF07889.7 gi|57640565|ref|YP_183043.1| - 0.19 11.5 26.9 1.5 8.6 2.2 4.5 2 2 2 4 4 4 0 Protein of unknown function (DUF1664) Hpt PF01627.18 gi|57640565|ref|YP_183043.1| - 0.2 11.6 8.9 1.1 9.2 0.8 4.6 2 2 3 5 5 5 0 Hpt domain Pox_I6 PF04595.8 gi|57640565|ref|YP_183043.1| - 0.22 10.2 6.5 4.1 6.0 0.2 3.0 2 1 1 3 3 3 0 Poxvirus I6-like family Herpes_U30 PF04523.8 gi|57640565|ref|YP_183043.1| - 0.28 8.5 11.6 0.32 8.3 2.3 2.4 1 1 0 2 2 2 0 Herpes virus tegument protein U30 Vps53_N PF04100.7 gi|57640565|ref|YP_183043.1| - 0.29 9.8 25.1 0.011 14.5 2.8 3.6 1 1 3 5 5 5 0 Vps53-like, N-terminal FUSC PF04632.7 gi|57640565|ref|YP_183043.1| - 0.31 9.4 6.0 2.7 6.2 0.6 2.3 1 1 1 2 2 2 0 Fusaric acid resistance protein family Syntaxin PF00804.20 gi|57640565|ref|YP_183043.1| - 0.33 11.1 28.1 15 5.8 5.5 4.9 1 1 1 2 2 1 0 Syntaxin Lipoprotein_7 PF01540.11 gi|57640565|ref|YP_183043.1| - 0.33 9.9 23.8 0.39 9.7 2.1 3.1 1 1 2 3 3 3 0 Adhesin lipoprotein DUF2580 PF10824.3 gi|57640565|ref|YP_183043.1| - 0.34 11.2 12.8 0.17 12.2 0.7 4.6 2 1 4 6 6 4 0 Protein of unknown function (DUF2580) FH2 PF02181.18 gi|57640565|ref|YP_183043.1| - 0.34 9.7 15.2 2.2 7.0 5.8 3.2 2 2 0 2 2 2 0 Formin Homology 2 Domain COG2 PF06148.6 gi|57640565|ref|YP_183043.1| - 0.41 10.5 22.0 0.92 9.3 0.6 5.0 2 2 2 4 4 4 0 COG (conserved oligomeric Golgi) complex component, COG2 ERM PF00769.14 gi|57640565|ref|YP_183043.1| - 0.5 9.8 20.2 0.073 12.5 0.9 2.3 1 1 0 2 2 2 0 Ezrin/radixin/moesin family Peptidase_C65 PF10275.4 gi|57640565|ref|YP_183043.1| - 0.51 9.6 12.6 1.4 8.1 0.8 2.5 2 1 0 2 2 2 0 Peptidase C65 Otubain Cytochrom_C_2 PF01322.15 gi|57640565|ref|YP_183043.1| - 0.58 10.7 11.1 2.7 8.5 0.6 2.8 1 1 0 2 2 2 0 Cytochrome C' Cauli_AT PF03233.8 gi|57640565|ref|YP_183043.1| - 0.59 9.8 18.0 0.13 12.0 1.1 4.0 2 2 2 4 4 4 0 Aphid transmission protein DUF4164 PF13747.1 gi|57640565|ref|YP_183043.1| - 0.63 10.2 22.5 3 8.0 1.5 4.7 4 1 1 5 5 4 0 Domain of unknown function (DUF4164) Phage_GPO PF05929.6 gi|57640565|ref|YP_183043.1| - 0.69 9.1 22.2 1.2 8.2 1.6 3.2 1 1 2 3 3 3 0 Phage capsid scaffolding protein (GPO) serine peptidase Exonuc_VII_S PF02609.11 gi|57640565|ref|YP_183043.1| - 0.85 9.4 7.1 1.3 8.8 1.0 3.5 3 1 1 4 4 3 0 Exonuclease VII small subunit HsdM_N PF12161.3 gi|57640565|ref|YP_183043.1| - 0.91 9.9 7.2 26 5.2 0.1 3.5 2 2 1 3 3 3 0 HsdM N-terminal domain Hormone_1 PF00103.15 gi|57640565|ref|YP_183043.1| - 0.92 8.7 17.2 12 5.1 0.2 5.3 2 2 4 6 6 6 0 Somatotropin hormone family APG6 PF04111.7 gi|57640565|ref|YP_183043.1| - 1.1 8.2 20.1 0.44 9.5 0.3 2.7 2 1 1 3 3 3 0 Autophagy protein Apg6 DASH_Duo1 PF08651.5 gi|57640565|ref|YP_183043.1| - 1.1 8.9 19.2 0.46 10.0 1.0 5.0 3 3 1 4 4 4 0 DASH complex subunit Duo1 TMP_2 PF06791.8 gi|57640565|ref|YP_183043.1| - 1.3 8.5 18.6 2.6 7.6 2.9 3.3 1 1 2 4 4 4 0 Prophage tail length tape measure protein Rootletin PF15035.1 gi|57640565|ref|YP_183043.1| - 1.5 8.7 18.5 5 7.0 5.3 2.7 1 1 1 2 2 2 0 Ciliary rootlet component, centrosome cohesion DUF2935 PF11155.3 gi|57640565|ref|YP_183043.1| - 1.6 8.8 11.0 6e+03 -2.8 7.6 3.8 1 1 0 1 1 0 0 Domain of unknown function (DUF2935) Mnd1 PF03962.10 gi|57640565|ref|YP_183043.1| - 1.7 8.2 21.2 1.2 8.7 1.9 3.3 1 1 1 3 3 3 0 Mnd1 family ArsC PF03960.10 gi|57640565|ref|YP_183043.1| - 2.1 8.4 6.7 2.3 8.3 0.2 3.6 2 1 2 4 4 4 0 ArsC family COG5 PF10392.4 gi|57640565|ref|YP_183043.1| - 2.3 8.1 17.8 3.4 7.6 0.2 4.4 2 2 2 4 4 4 0 Golgi transport complex subunit 5 DUF972 PF06156.8 gi|57640565|ref|YP_183043.1| - 2.5 8.4 22.4 3.8 7.9 1.1 4.6 2 2 3 5 5 4 0 Protein of unknown function (DUF972) CENP-F_leu_zip PF10473.4 gi|57640565|ref|YP_183043.1| - 2.5 7.9 24.7 0.03 14.1 5.6 3.7 2 2 1 4 4 4 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 IFT20 PF14931.1 gi|57640565|ref|YP_183043.1| - 2.6 7.9 19.6 0.45 10.4 1.3 4.5 2 2 2 4 4 4 0 Intraflagellar transport complex B, subunit 20 LOH1CR12 PF10158.4 gi|57640565|ref|YP_183043.1| - 2.7 7.8 18.5 1.9 8.3 0.8 4.1 2 2 2 4 4 4 0 Tumour suppressor protein DUF4298 PF14131.1 gi|57640565|ref|YP_183043.1| - 2.7 7.9 12.3 7.1 6.5 0.3 4.6 3 2 1 5 5 3 0 Domain of unknown function (DUF4298) HAMP PF00672.20 gi|57640565|ref|YP_183043.1| - 3.1 8.0 13.6 1.4 9.1 0.1 5.3 5 2 1 6 6 4 0 HAMP domain Med10 PF09748.4 gi|57640565|ref|YP_183043.1| - 3.1 7.6 17.3 1.2 8.9 2.2 4.2 2 2 2 4 4 4 0 Transcription factor subunit Med10 of Mediator complex UPF0118 PF01594.11 gi|57640565|ref|YP_183043.1| - 3.3 6.6 4.3 20 4.0 0.2 2.9 2 1 0 2 2 2 0 Domain of unknown function DUF20 Tweety PF04906.8 gi|57640565|ref|YP_183043.1| - 3.3 6.0 16.2 1.5 7.1 1.2 2.9 1 1 2 3 3 3 0 Tweety DUF2730 PF10805.3 gi|57640565|ref|YP_183043.1| - 3.4 7.4 8.8 0.4 10.4 1.3 2.9 3 1 0 3 3 2 0 Protein of unknown function (DUF2730) Z1 PF10593.4 gi|57640565|ref|YP_183043.1| - 3.5 6.7 16.1 0.81 8.8 2.4 2.9 1 1 2 3 3 3 0 Z1 domain Occludin_ELL PF07303.8 gi|57640565|ref|YP_183043.1| - 3.7 8.3 9.6 39 5.0 0.3 4.2 2 2 2 4 4 3 0 Occludin homology domain DUF4559 PF15112.1 gi|57640565|ref|YP_183043.1| - 3.8 6.5 21.5 1.9 7.5 3.9 2.9 1 1 2 3 3 3 0 Domain of unknown function (DUF4559) Syntaxin-6_N PF09177.6 gi|57640565|ref|YP_183043.1| - 4.8 7.6 21.0 8.6 6.8 3.5 4.2 2 2 1 3 3 3 0 Syntaxin 6, N-terminal Sec5 PF15469.1 gi|57640565|ref|YP_183043.1| - 5.1 6.7 17.2 4 7.1 0.7 3.9 1 1 3 4 4 4 0 Exocyst complex component Sec5 PA28_beta PF02252.13 gi|57640565|ref|YP_183043.1| - 7.2 6.0 8.2 11 5.4 0.1 4.0 1 1 1 3 3 3 0 Proteasome activator pa28 beta subunit DUF2203 PF09969.4 gi|57640565|ref|YP_183043.1| - 9.7 6.4 20.4 22 5.2 1.8 4.1 1 1 1 2 2 1 0 Uncharacterized conserved protein (DUF2203) DUF651 PF04895.7 gi|57640565|ref|YP_183043.1| - 9.8 5.8 9.0 14 5.3 0.2 4.0 2 2 3 5 5 4 0 Archaeal protein of unknown function (DUF651) RasGAP_C PF03836.10 gi|57640565|ref|YP_183043.1| - 9.9 5.8 13.3 0.92 9.1 0.4 3.4 2 2 1 3 3 3 0 RasGAP C-terminus LPP PF04728.8 gi|57640565|ref|YP_183043.1| - 9.9 6.0 7.5 17 5.3 0.3 3.6 3 0 0 3 3 2 0 Lipoprotein leucine-zipper Nup54 PF13874.1 gi|57640565|ref|YP_183043.1| - 10 5.8 18.3 0.9 9.1 1.7 3.5 1 1 1 3 3 3 0 Nucleoporin complex subunit 54 CheR PF01739.13 gi|57640566|ref|YP_183044.1| - 1e-62 210.9 0.0 1.3e-62 210.5 0.0 1.1 1 0 0 1 1 1 1 CheR methyltransferase, SAM binding domain CheR_N PF03705.10 gi|57640566|ref|YP_183044.1| - 4.7e-11 41.8 4.2 9.4e-11 40.9 2.9 1.5 1 0 0 1 1 1 1 CheR methyltransferase, all-alpha domain Methyltransf_18 PF12847.2 gi|57640566|ref|YP_183044.1| - 0.00079 19.9 0.0 0.0013 19.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|57640566|ref|YP_183044.1| - 0.0021 18.4 0.0 0.036 14.5 0.0 2.3 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|57640566|ref|YP_183044.1| - 0.098 12.3 0.1 0.18 11.5 0.0 1.4 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_11 PF08241.7 gi|57640566|ref|YP_183044.1| - 0.1 13.1 0.0 0.49 10.9 0.0 2.0 2 0 0 2 2 2 0 Methyltransferase domain Response_reg PF00072.19 gi|57640567|ref|YP_183045.1| - 8.7e-33 112.6 1.4 9.7e-33 112.5 1.0 1.0 1 0 0 1 1 1 1 Response regulator receiver domain B12-binding PF02310.14 gi|57640567|ref|YP_183045.1| - 0.003 17.4 0.2 0.0041 16.9 0.1 1.2 1 0 0 1 1 1 1 B12 binding domain Peripla_BP_6 PF13458.1 gi|57640567|ref|YP_183045.1| - 0.014 14.8 0.1 0.017 14.5 0.1 1.1 1 0 0 1 1 1 0 Periplasmic binding protein AlaDh_PNT_N PF05222.10 gi|57640567|ref|YP_183045.1| - 0.062 13.3 0.3 0.088 12.8 0.2 1.2 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, N-terminal domain TruB_N PF01509.13 gi|57640567|ref|YP_183045.1| - 0.098 12.8 0.0 0.17 12.0 0.0 1.3 1 0 0 1 1 1 0 TruB family pseudouridylate synthase (N terminal domain) CheB_methylest PF01339.12 gi|57640568|ref|YP_183046.1| - 7.1e-69 230.8 0.3 1.8e-68 229.5 0.1 1.7 2 0 0 2 2 2 1 CheB methylesterase Response_reg PF00072.19 gi|57640568|ref|YP_183046.1| - 1.8e-26 92.3 0.6 5.7e-26 90.7 0.3 1.9 2 0 0 2 2 2 1 Response regulator receiver domain DUF3798 PF12683.2 gi|57640568|ref|YP_183046.1| - 0.11 11.6 0.3 0.18 10.8 0.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3798) P2 PF07194.6 gi|57640569|ref|YP_183047.1| - 4e-39 132.3 2.3 4.1e-21 74.6 0.1 3.0 3 0 0 3 3 3 2 P2 response regulator binding domain Hpt PF01627.18 gi|57640569|ref|YP_183047.1| - 9.7e-24 83.1 0.4 9.7e-24 83.1 0.3 2.5 3 0 0 3 3 3 1 Hpt domain H-kinase_dim PF02895.9 gi|57640569|ref|YP_183047.1| - 5.2e-19 68.3 4.2 5.2e-19 68.3 2.9 2.5 2 1 0 2 2 2 1 Signal transducing histidine kinase, homodimeric domain DUF1858 PF08984.6 gi|57640569|ref|YP_183047.1| - 0.052 13.2 0.1 0.65 9.6 0.1 2.7 2 0 0 2 2 2 0 Domain of unknown function (DUF1858) Rac1 PF09632.5 gi|57640569|ref|YP_183047.1| - 0.066 12.2 0.0 0.12 11.4 0.0 1.3 1 0 0 1 1 1 0 Rac1-binding domain FliL PF03748.9 gi|57640569|ref|YP_183047.1| - 0.075 13.0 0.2 0.34 10.9 0.0 2.2 2 0 0 2 2 2 0 Flagellar basal body-associated protein FliL LUC7 PF03194.10 gi|57640569|ref|YP_183047.1| - 0.24 10.8 7.2 0.047 13.2 1.6 2.2 2 1 0 2 2 2 0 LUC7 N_terminus Jnk-SapK_ap_N PF09744.4 gi|57640569|ref|YP_183047.1| - 4 7.4 7.6 0.46 10.4 0.2 2.8 3 0 0 3 3 3 0 JNK_SAPK-associated protein-1 CheW PF01584.14 gi|57640570|ref|YP_183048.1| - 1e-28 99.5 0.9 1.5e-28 99.0 0.6 1.2 1 0 0 1 1 1 1 CheW-like domain HATPase_c PF02518.21 gi|57640570|ref|YP_183048.1| - 2.1e-15 56.4 0.0 3.8e-15 55.5 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CheC PF04509.7 gi|57640571|ref|YP_183049.1| - 1.1e-24 85.8 3.4 1.3e-12 47.2 0.8 2.3 2 0 0 2 2 2 2 CheC-like family CheX PF13690.1 gi|57640571|ref|YP_183049.1| - 3.3e-08 33.2 1.2 6.2e-06 25.9 0.2 2.1 2 0 0 2 2 2 2 Chemotaxis phosphatase CheX CheC PF04509.7 gi|57640572|ref|YP_183050.1| - 3.1e-23 81.2 0.4 1e-10 41.1 0.0 2.4 2 0 0 2 2 2 2 CheC-like family CheX PF13690.1 gi|57640572|ref|YP_183050.1| - 3.9e-09 36.2 0.0 2e-06 27.5 0.0 2.6 3 0 0 3 3 3 2 Chemotaxis phosphatase CheX MCPsignal PF00015.16 gi|57640573|ref|YP_183051.1| - 8.7e-48 162.6 48.7 3.3e-43 147.7 21.7 3.5 1 1 1 2 2 2 2 Methyl-accepting chemotaxis protein (MCP) signalling domain Cache_1 PF02743.13 gi|57640573|ref|YP_183051.1| - 1.6e-28 98.0 0.4 8.7e-28 95.7 0.1 2.4 2 0 0 2 2 2 1 Cache domain HAMP PF00672.20 gi|57640573|ref|YP_183051.1| - 1.5e-09 37.9 4.2 4.3e-08 33.2 0.4 5.3 5 2 1 6 6 5 2 HAMP domain AAA_13 PF13166.1 gi|57640573|ref|YP_183051.1| - 0.00028 19.4 32.6 0.00094 17.7 5.8 2.4 2 1 1 3 3 3 2 AAA domain GTPase_Cys_C PF12631.2 gi|57640573|ref|YP_183051.1| - 0.006 16.9 21.4 0.56 10.6 1.6 5.2 2 1 1 4 4 4 1 Catalytic cysteine-containing C-terminus of GTPase, MnmE Med30 PF11315.3 gi|57640573|ref|YP_183051.1| - 0.0074 16.4 21.1 0.0088 16.1 3.3 4.2 1 1 3 4 4 4 1 Mediator complex subunit 30 Spc7 PF08317.6 gi|57640573|ref|YP_183051.1| - 0.0074 14.9 31.3 0.03 12.9 5.7 3.2 1 1 3 4 4 4 3 Spc7 kinetochore protein YkuI_C PF10388.4 gi|57640573|ref|YP_183051.1| - 0.017 14.7 8.0 0.11 12.2 0.0 4.3 4 1 1 5 5 5 0 EAL-domain associated signalling protein domain DUF948 PF06103.6 gi|57640573|ref|YP_183051.1| - 0.024 14.4 35.6 1.6 8.6 2.1 7.0 3 2 5 8 8 8 0 Bacterial protein of unknown function (DUF948) NPV_P10 PF05531.7 gi|57640573|ref|YP_183051.1| - 0.027 14.7 29.4 2.1 8.6 1.7 6.2 5 2 2 7 7 6 0 Nucleopolyhedrovirus P10 protein Uteroglobin PF01099.12 gi|57640573|ref|YP_183051.1| - 0.067 13.0 0.7 2.5 7.9 0.0 3.6 3 0 0 3 3 2 0 Uteroglobin family Katanin_con80 PF13925.1 gi|57640573|ref|YP_183051.1| - 0.087 12.5 0.1 0.087 12.5 0.1 4.0 3 2 2 5 5 4 0 con80 domain of Katanin Reo_sigmaC PF04582.7 gi|57640573|ref|YP_183051.1| - 0.11 11.6 23.3 0.15 11.2 1.4 3.5 2 1 2 4 4 3 0 Reovirus sigma C capsid protein CheZ PF04344.8 gi|57640573|ref|YP_183051.1| - 0.21 11.2 27.8 0.057 13.0 4.5 4.6 3 2 1 4 4 4 0 Chemotaxis phosphatase, CheZ DUF1664 PF07889.7 gi|57640573|ref|YP_183051.1| - 0.22 11.3 37.2 0.032 14.0 2.4 6.3 4 2 2 6 6 5 0 Protein of unknown function (DUF1664) Laminin_I PF06008.9 gi|57640573|ref|YP_183051.1| - 0.22 10.7 41.5 0.35 10.1 6.8 4.3 2 1 4 6 6 5 0 Laminin Domain I Fib_alpha PF08702.5 gi|57640573|ref|YP_183051.1| - 0.26 11.4 27.8 1.5 8.9 4.5 4.7 3 2 1 4 4 3 0 Fibrinogen alpha/beta chain family Cache_2 PF08269.6 gi|57640573|ref|YP_183051.1| - 0.28 11.1 12.7 0.52 10.3 0.0 4.4 3 0 0 3 3 3 0 Cache domain Syntaxin-6_N PF09177.6 gi|57640573|ref|YP_183051.1| - 0.31 11.4 33.2 0.27 11.6 2.5 5.3 4 1 2 6 6 4 0 Syntaxin 6, N-terminal Snapin_Pallidin PF14712.1 gi|57640573|ref|YP_183051.1| - 0.35 11.2 21.0 0.44 10.8 2.2 5.1 4 1 1 5 5 5 0 Snapin/Pallidin TMP_2 PF06791.8 gi|57640573|ref|YP_183051.1| - 0.37 10.3 35.5 0.033 13.7 4.6 4.9 2 1 3 6 6 5 0 Prophage tail length tape measure protein Med9 PF07544.8 gi|57640573|ref|YP_183051.1| - 0.38 10.5 17.2 0.6 9.8 1.5 4.4 3 2 0 3 3 3 0 RNA polymerase II transcription mediator complex subunit 9 CorA PF01544.13 gi|57640573|ref|YP_183051.1| - 0.58 9.1 19.8 0.074 12.0 2.2 3.5 1 1 2 3 3 3 0 CorA-like Mg2+ transporter protein Laminin_II PF06009.7 gi|57640573|ref|YP_183051.1| - 1 9.1 41.0 0.23 11.2 5.8 5.8 2 1 5 7 7 7 0 Laminin Domain II Sec8_exocyst PF04048.9 gi|57640573|ref|YP_183051.1| - 2.2 7.9 19.0 0.14 11.8 0.9 4.2 2 2 2 4 4 4 0 Sec8 exocyst complex component specific domain Med15_fungi PF05397.7 gi|57640573|ref|YP_183051.1| - 2.4 8.1 14.7 14 5.7 0.1 4.9 2 2 2 5 5 5 0 Mediator complex subunit 15 AKNA PF12443.3 gi|57640573|ref|YP_183051.1| - 2.5 8.1 9.0 0.75 9.8 1.0 3.4 4 0 0 4 4 2 0 AT-hook-containing transcription factor HSBP1 PF06825.7 gi|57640573|ref|YP_183051.1| - 2.8 7.5 8.5 1.3 8.6 0.5 4.0 5 0 0 5 5 3 0 Heat shock factor binding protein 1 YjcZ PF13990.1 gi|57640573|ref|YP_183051.1| - 3 6.9 19.9 0.18 10.9 3.2 3.3 1 1 4 5 5 5 0 YjcZ-like protein WXG100 PF06013.7 gi|57640573|ref|YP_183051.1| - 3.2 7.8 32.1 3.8 7.5 0.3 7.4 3 2 3 7 7 7 0 Proteins of 100 residues with WXG COG5 PF10392.4 gi|57640573|ref|YP_183051.1| - 4 7.4 15.3 4.1 7.3 1.2 4.4 3 1 1 4 4 4 0 Golgi transport complex subunit 5 Cauli_AT PF03233.8 gi|57640573|ref|YP_183051.1| - 4.2 7.0 17.8 6.9 6.3 0.1 5.1 3 2 2 5 5 5 0 Aphid transmission protein Vps53_N PF04100.7 gi|57640573|ref|YP_183051.1| - 7.4 5.2 29.9 1.4 7.6 3.4 3.7 1 1 3 4 4 4 0 Vps53-like, N-terminal Syntaxin PF00804.20 gi|57640573|ref|YP_183051.1| - 8.3 6.6 31.0 7.6 6.7 0.1 6.2 1 1 4 5 5 4 0 Syntaxin Reticulon PF02453.12 gi|57640573|ref|YP_183051.1| - 8.4 5.9 7.7 1.9 8.0 0.0 3.4 4 0 0 4 4 4 0 Reticulon APG17 PF04108.7 gi|57640573|ref|YP_183051.1| - 8.5 5.0 31.3 0.054 12.2 0.9 4.4 3 2 2 5 5 5 0 Autophagy protein Apg17 CheD PF03975.8 gi|57640574|ref|YP_183052.1| - 1.4e-36 124.6 0.4 1.8e-36 124.3 0.3 1.1 1 0 0 1 1 1 1 CheD chemotactic sensory transduction DUF368 PF04018.8 gi|57640575|ref|YP_183053.1| - 0.0022 17.2 0.4 0.013 14.6 0.1 1.9 1 1 1 2 2 2 1 Domain of unknown function (DUF368) DUF4527 PF15030.1 gi|57640575|ref|YP_183053.1| - 0.0079 15.5 0.3 0.014 14.6 0.2 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF4527) ZapA PF05164.8 gi|57640575|ref|YP_183053.1| - 0.012 15.5 4.7 1.1 9.3 0.1 2.6 3 0 0 3 3 3 0 Cell division protein ZapA Phasin PF05597.6 gi|57640575|ref|YP_183053.1| - 0.015 15.0 5.1 0.042 13.6 0.3 2.4 2 0 0 2 2 2 0 Poly(hydroxyalcanoate) granule associated protein (phasin) DUF1049 PF06305.6 gi|57640575|ref|YP_183053.1| - 0.19 11.2 5.2 0.32 10.5 0.4 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1049) IncA PF04156.9 gi|57640575|ref|YP_183053.1| - 0.96 9.0 11.1 3.2 7.3 2.7 2.4 1 1 0 2 2 2 0 IncA protein COG5 PF10392.4 gi|57640575|ref|YP_183053.1| - 3.7 7.5 6.3 3.4 7.6 0.3 2.7 2 1 0 2 2 2 0 Golgi transport complex subunit 5 CheF-arch PF04283.7 gi|57640576|ref|YP_183054.1| - 4.7e-69 231.9 0.7 7e-69 231.4 0.5 1.2 1 0 0 1 1 1 1 Chemotaxis signal transduction system protein F from archaea DUF2250 PF10007.4 gi|57640576|ref|YP_183054.1| - 0.0069 16.2 2.8 1.2 9.1 0.1 2.5 1 1 0 2 2 2 2 Uncharacterized protein conserved in archaea (DUF2250) TrmB PF01978.14 gi|57640576|ref|YP_183054.1| - 0.0092 15.6 0.1 0.021 14.5 0.1 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Pcc1 PF09341.5 gi|57640577|ref|YP_183055.1| - 5.6e-21 74.3 0.0 6e-21 74.2 0.0 1.0 1 0 0 1 1 1 1 Transcription factor Pcc1 Prefoldin_2 PF01920.15 gi|57640578|ref|YP_183056.1| - 1.5e-26 92.2 16.7 1.8e-26 91.9 11.6 1.0 1 0 0 1 1 1 1 Prefoldin subunit ALIX_LYPXL_bnd PF13949.1 gi|57640578|ref|YP_183056.1| - 0.00024 20.1 7.8 0.00036 19.5 5.4 1.2 1 1 0 1 1 1 1 ALIX V-shaped domain binding to HIV WASH-7_mid PF14744.1 gi|57640578|ref|YP_183056.1| - 0.0048 15.7 2.8 0.0053 15.6 2.0 1.0 1 0 0 1 1 1 1 WASH complex subunit 7 TMF_DNA_bd PF12329.3 gi|57640578|ref|YP_183056.1| - 0.0059 16.3 10.3 0.0059 16.3 7.1 2.1 2 0 0 2 2 2 1 TATA element modulatory factor 1 DNA binding IncA PF04156.9 gi|57640578|ref|YP_183056.1| - 0.01 15.4 11.6 0.017 14.6 1.6 2.0 2 0 0 2 2 2 0 IncA protein FTA4 PF13093.1 gi|57640578|ref|YP_183056.1| - 0.014 14.8 6.0 0.02 14.3 4.2 1.3 1 0 0 1 1 1 0 Kinetochore complex Fta4 of Sim4 subunit, or CENP-50 YlqD PF11068.3 gi|57640578|ref|YP_183056.1| - 0.016 15.2 5.3 0.016 15.2 3.6 2.2 1 1 1 2 2 2 0 YlqD protein WEMBL PF05701.6 gi|57640578|ref|YP_183056.1| - 0.017 13.6 10.7 0.25 9.7 0.5 2.0 2 0 0 2 2 2 0 Weak chloroplast movement under blue light PilJ PF13675.1 gi|57640578|ref|YP_183056.1| - 0.021 15.1 2.3 0.31 11.3 0.0 2.2 2 0 0 2 2 2 0 Type IV pili methyl-accepting chemotaxis transducer N-term Fmp27_WPPW PF10359.4 gi|57640578|ref|YP_183056.1| - 0.022 13.2 3.7 0.026 12.9 2.6 1.1 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain DUF3584 PF12128.3 gi|57640578|ref|YP_183056.1| - 0.035 11.4 7.4 0.043 11.1 5.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) DUF972 PF06156.8 gi|57640578|ref|YP_183056.1| - 0.035 14.4 12.2 0.23 11.8 2.9 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF972) FlxA PF14282.1 gi|57640578|ref|YP_183056.1| - 0.039 13.8 2.4 0.039 13.8 1.7 2.2 2 0 0 2 2 2 0 FlxA-like protein Cortex-I_coil PF09304.5 gi|57640578|ref|YP_183056.1| - 0.04 13.9 13.6 0.45 10.5 2.7 2.2 1 1 1 2 2 2 0 Cortexillin I, coiled coil Prefoldin PF02996.12 gi|57640578|ref|YP_183056.1| - 0.04 13.5 16.7 0.072 12.7 4.3 2.2 1 1 1 2 2 2 0 Prefoldin subunit CENP-F_leu_zip PF10473.4 gi|57640578|ref|YP_183056.1| - 0.042 13.7 13.2 0.34 10.7 0.7 2.1 2 0 0 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 NPV_P10 PF05531.7 gi|57640578|ref|YP_183056.1| - 0.044 14.0 2.0 0.044 14.0 1.4 2.2 2 0 0 2 2 2 0 Nucleopolyhedrovirus P10 protein Phasin PF05597.6 gi|57640578|ref|YP_183056.1| - 0.047 13.4 10.7 0.031 14.0 3.9 2.1 1 1 1 2 2 2 0 Poly(hydroxyalcanoate) granule associated protein (phasin) SlyX PF04102.7 gi|57640578|ref|YP_183056.1| - 0.053 13.8 10.2 0.072 13.4 0.7 2.3 2 0 0 2 2 2 0 SlyX Vps52 PF04129.7 gi|57640578|ref|YP_183056.1| - 0.057 11.9 3.9 0.062 11.8 2.7 1.1 1 0 0 1 1 1 0 Vps52 / Sac2 family OPA3 PF07047.7 gi|57640578|ref|YP_183056.1| - 0.069 12.9 7.3 0.083 12.6 5.1 1.1 1 0 0 1 1 1 0 Optic atrophy 3 protein (OPA3) Flagellin_N PF00669.15 gi|57640578|ref|YP_183056.1| - 0.072 12.8 4.0 0.071 12.9 1.6 1.7 1 1 1 2 2 2 0 Bacterial flagellin N-terminal helical region Med4 PF10018.4 gi|57640578|ref|YP_183056.1| - 0.073 12.4 7.1 2.1 7.6 0.1 2.1 2 0 0 2 2 2 0 Vitamin-D-receptor interacting Mediator subunit 4 HSCB_C PF07743.8 gi|57640578|ref|YP_183056.1| - 0.087 13.2 1.6 0.087 13.2 1.1 2.2 2 1 0 2 2 2 0 HSCB C-terminal oligomerisation domain Transposase_22 PF02994.9 gi|57640578|ref|YP_183056.1| - 0.088 11.2 6.6 0.1 11.0 4.6 1.1 1 0 0 1 1 1 0 L1 transposable element DUF489 PF04356.7 gi|57640578|ref|YP_183056.1| - 0.09 12.3 2.0 0.11 12.0 1.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF489) Filament PF00038.16 gi|57640578|ref|YP_183056.1| - 0.092 12.1 12.4 0.18 11.2 2.6 2.0 1 1 1 2 2 2 0 Intermediate filament protein TcdB_N PF12918.2 gi|57640578|ref|YP_183056.1| - 0.1 12.6 9.0 0.29 11.2 0.5 2.3 2 0 0 2 2 2 0 TcdB toxin N-terminal helical domain DUF948 PF06103.6 gi|57640578|ref|YP_183056.1| - 0.11 12.3 10.4 0.034 14.0 1.9 2.1 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF948) XhlA PF10779.4 gi|57640578|ref|YP_183056.1| - 0.14 12.0 9.6 0.052 13.4 3.0 2.1 2 0 0 2 2 2 0 Haemolysin XhlA DUF3416 PF11896.3 gi|57640578|ref|YP_183056.1| - 0.15 12.0 4.4 0.64 9.9 3.0 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF3416) Viral_P18 PF04521.8 gi|57640578|ref|YP_183056.1| - 0.15 11.4 8.6 0.048 13.0 1.1 2.1 2 0 0 2 2 2 0 ssRNA positive strand viral 18kD cysteine rich protein Myosin_tail_1 PF01576.14 gi|57640578|ref|YP_183056.1| - 0.16 9.6 15.7 0.23 9.1 4.1 1.7 1 1 0 2 2 2 0 Myosin tail Snf7 PF03357.16 gi|57640578|ref|YP_183056.1| - 0.24 10.7 11.4 0.29 10.4 3.1 2.1 2 0 0 2 2 2 0 Snf7 Laminin_I PF06008.9 gi|57640578|ref|YP_183056.1| - 0.25 10.6 10.5 1.5 8.0 0.7 2.0 2 0 0 2 2 2 0 Laminin Domain I BLOC1_2 PF10046.4 gi|57640578|ref|YP_183056.1| - 0.28 11.3 9.1 0.23 11.5 1.3 2.1 2 0 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 UPF0184 PF03670.8 gi|57640578|ref|YP_183056.1| - 0.29 11.3 1.9 1.5 9.0 0.1 2.5 2 1 1 3 3 3 0 Uncharacterised protein family (UPF0184) DUF2408 PF10303.4 gi|57640578|ref|YP_183056.1| - 0.29 11.2 8.5 1.7 8.7 5.9 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF2408) P4Ha_N PF08336.6 gi|57640578|ref|YP_183056.1| - 0.29 10.9 4.7 0.51 10.1 0.6 2.1 2 0 0 2 2 2 0 Prolyl 4-Hydroxylase alpha-subunit, N-terminal region Laminin_II PF06009.7 gi|57640578|ref|YP_183056.1| - 0.29 10.8 12.8 0.71 9.6 8.9 1.6 1 1 0 1 1 1 0 Laminin Domain II DASH_Dam1 PF08653.5 gi|57640578|ref|YP_183056.1| - 0.3 10.8 1.3 0.44 10.3 0.1 1.9 2 1 0 2 2 1 0 DASH complex subunit Dam1 ADIP PF11559.3 gi|57640578|ref|YP_183056.1| - 0.3 10.9 14.3 0.15 11.9 3.4 2.1 2 0 0 2 2 2 0 Afadin- and alpha -actinin-Binding EzrA PF06160.7 gi|57640578|ref|YP_183056.1| - 0.34 9.0 11.8 0.98 7.5 8.2 1.7 1 1 0 1 1 1 0 Septation ring formation regulator, EzrA DUF4140 PF13600.1 gi|57640578|ref|YP_183056.1| - 0.35 11.3 12.2 0.16 12.3 2.5 2.4 1 1 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) SYCE1 PF15233.1 gi|57640578|ref|YP_183056.1| - 0.37 10.7 11.9 1.4 8.8 2.6 2.1 2 0 0 2 2 2 0 Synaptonemal complex central element protein 1 DUF607 PF04678.8 gi|57640578|ref|YP_183056.1| - 0.4 10.5 6.9 0.82 9.5 4.7 1.5 1 1 0 1 1 1 0 Protein of unknown function, DUF607 Spc7 PF08317.6 gi|57640578|ref|YP_183056.1| - 0.45 9.1 14.3 0.78 8.3 9.9 1.3 1 1 0 1 1 1 0 Spc7 kinetochore protein AAA_13 PF13166.1 gi|57640578|ref|YP_183056.1| - 0.46 8.8 12.4 1.6 7.1 8.4 1.7 1 1 0 1 1 1 0 AAA domain EDR1 PF14381.1 gi|57640578|ref|YP_183056.1| - 0.47 9.9 2.7 0.55 9.7 1.8 1.2 1 0 0 1 1 1 0 Ethylene-responsive protein kinase Le-CTR1 TBPIP PF07106.8 gi|57640578|ref|YP_183056.1| - 0.48 9.9 15.8 0.17 11.3 3.4 2.1 1 1 1 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Med9 PF07544.8 gi|57640578|ref|YP_183056.1| - 0.49 10.1 8.4 6 6.6 5.8 2.2 1 1 0 1 1 1 0 RNA polymerase II transcription mediator complex subunit 9 DUF4164 PF13747.1 gi|57640578|ref|YP_183056.1| - 0.63 10.2 7.6 1.3 9.2 1.6 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4164) TPR_MLP1_2 PF07926.7 gi|57640578|ref|YP_183056.1| - 0.76 9.5 18.5 6.8 6.4 12.8 1.9 1 1 0 1 1 1 0 TPR/MLP1/MLP2-like protein FliJ PF02050.11 gi|57640578|ref|YP_183056.1| - 0.84 9.6 13.3 1.3 9.0 1.9 2.2 2 0 0 2 2 2 0 Flagellar FliJ protein Seryl_tRNA_N PF02403.17 gi|57640578|ref|YP_183056.1| - 0.86 9.6 15.6 0.12 12.3 4.1 2.1 1 1 1 2 2 2 0 Seryl-tRNA synthetase N-terminal domain EMP24_GP25L PF01105.19 gi|57640578|ref|YP_183056.1| - 0.94 9.1 4.8 1.7 8.3 3.3 1.5 1 1 0 1 1 1 0 emp24/gp25L/p24 family/GOLD DUF4510 PF14971.1 gi|57640578|ref|YP_183056.1| - 1 9.5 6.1 1.7 8.7 0.5 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4510) Syntaxin-6_N PF09177.6 gi|57640578|ref|YP_183056.1| - 1.1 9.6 6.6 4.9 7.6 3.3 2.4 1 1 1 2 2 2 0 Syntaxin 6, N-terminal Spc24 PF08286.6 gi|57640578|ref|YP_183056.1| - 1.1 8.9 14.3 0.81 9.4 3.6 2.1 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 Mnd1 PF03962.10 gi|57640578|ref|YP_183056.1| - 1.2 8.7 10.9 2.8 7.5 7.6 1.5 1 1 0 1 1 1 0 Mnd1 family Ead_Ea22 PF13935.1 gi|57640578|ref|YP_183056.1| - 1.2 9.4 8.0 7 6.9 5.5 1.9 1 1 0 1 1 1 0 Ead/Ea22-like protein AMP-binding_C_2 PF14535.1 gi|57640578|ref|YP_183056.1| - 1.3 9.0 6.0 8.5 6.4 3.2 2.1 1 1 1 2 2 2 0 AMP-binding enzyme C-terminal domain ACCA PF03255.9 gi|57640578|ref|YP_183056.1| - 1.4 8.4 6.3 0.64 9.5 1.2 2.0 2 0 0 2 2 2 0 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit DUF1664 PF07889.7 gi|57640578|ref|YP_183056.1| - 1.7 8.4 8.6 3.1 7.6 6.0 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1664) WXG100 PF06013.7 gi|57640578|ref|YP_183056.1| - 1.7 8.7 5.6 7.1 6.7 0.6 2.7 2 1 0 2 2 2 0 Proteins of 100 residues with WXG CCDC-167 PF15188.1 gi|57640578|ref|YP_183056.1| - 1.9 8.5 7.8 12 5.8 0.1 2.4 2 1 0 2 2 2 0 Coiled-coil domain-containing protein 167 Allexi_40kDa PF05549.6 gi|57640578|ref|YP_183056.1| - 2.1 7.5 6.0 11 5.2 4.2 1.9 1 1 0 1 1 1 0 Allexivirus 40kDa protein DUF342 PF03961.8 gi|57640578|ref|YP_183056.1| - 2.1 6.6 9.9 4 5.7 6.9 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF342) PEARLI-4 PF05278.7 gi|57640578|ref|YP_183056.1| - 2.2 7.6 9.2 0.52 9.6 2.9 1.8 1 1 1 2 2 2 0 Arabidopsis phospholipase-like protein (PEARLI 4) Uds1 PF15456.1 gi|57640578|ref|YP_183056.1| - 2.2 8.2 8.9 5.9 6.9 6.2 1.6 1 1 0 1 1 1 0 Up-regulated During Septation CENP-Q PF13094.1 gi|57640578|ref|YP_183056.1| - 2.3 8.2 15.1 0.86 9.6 3.2 2.1 2 0 0 2 2 2 0 CENP-Q, a CENPA-CAD centromere complex subunit DUF3847 PF12958.2 gi|57640578|ref|YP_183056.1| - 2.3 8.0 12.1 0.3 10.8 3.2 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3847) DUF4404 PF14357.1 gi|57640578|ref|YP_183056.1| - 2.5 8.5 11.9 0.12 12.8 2.0 2.2 2 1 0 2 2 2 0 Domain of unknown function (DUF4404) BMFP PF04380.8 gi|57640578|ref|YP_183056.1| - 2.5 8.2 9.5 1.6 8.9 1.0 3.1 3 0 0 3 3 3 0 Membrane fusogenic activity bZIP_1 PF00170.16 gi|57640578|ref|YP_183056.1| - 2.8 7.9 14.2 0.16 11.9 3.8 2.2 2 0 0 2 2 2 0 bZIP transcription factor V_ATPase_I PF01496.14 gi|57640578|ref|YP_183056.1| - 2.9 5.6 12.2 16 3.1 8.4 1.8 1 1 0 1 1 1 0 V-type ATPase 116kDa subunit family DUF4559 PF15112.1 gi|57640578|ref|YP_183056.1| - 3.2 6.8 7.7 5 6.1 5.4 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4559) Fib_alpha PF08702.5 gi|57640578|ref|YP_183056.1| - 3.2 7.8 10.0 11 6.1 6.9 1.8 1 1 0 1 1 1 0 Fibrinogen alpha/beta chain family CDC37_N PF03234.9 gi|57640578|ref|YP_183056.1| - 3.3 8.0 11.7 8.8 6.6 8.1 1.6 1 1 0 1 1 1 0 Cdc37 N terminal kinase binding DUF2968 PF11180.3 gi|57640578|ref|YP_183056.1| - 3.5 6.9 12.8 4 6.7 1.3 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2968) Baculo_PEP_C PF04513.7 gi|57640578|ref|YP_183056.1| - 3.6 7.4 9.7 1.3e+02 2.3 6.7 2.1 1 1 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus Uso1_p115_C PF04871.8 gi|57640578|ref|YP_183056.1| - 4.1 7.3 14.6 8.7 6.2 10.1 1.5 1 1 0 1 1 1 0 Uso1 / p115 like vesicle tethering protein, C terminal region Snapin_Pallidin PF14712.1 gi|57640578|ref|YP_183056.1| - 4.4 7.6 16.8 1.8 8.8 2.6 2.1 1 1 1 2 2 2 0 Snapin/Pallidin Adeno_PIX PF03955.9 gi|57640578|ref|YP_183056.1| - 4.4 7.8 9.5 8 7.0 3.7 2.3 1 1 1 2 2 2 0 Adenovirus hexon-associated protein (IX) MAD PF05557.8 gi|57640578|ref|YP_183056.1| - 5 5.0 14.5 28 2.5 10.1 1.8 1 1 0 1 1 1 0 Mitotic checkpoint protein Nup54 PF13874.1 gi|57640578|ref|YP_183056.1| - 5.2 6.7 9.9 20 4.8 6.8 1.9 1 1 0 1 1 1 0 Nucleoporin complex subunit 54 Prominin PF05478.6 gi|57640578|ref|YP_183056.1| - 5.5 4.3 10.3 21 2.4 7.4 1.6 1 1 0 1 1 1 0 Prominin Fzo_mitofusin PF04799.8 gi|57640578|ref|YP_183056.1| - 5.7 6.2 12.2 44 3.4 1.7 2.1 1 1 1 2 2 2 0 fzo-like conserved region Tektin PF03148.9 gi|57640578|ref|YP_183056.1| - 6.5 5.1 13.0 0.69 8.3 2.9 2.0 2 0 0 2 2 2 0 Tektin family COG2 PF06148.6 gi|57640578|ref|YP_183056.1| - 6.7 6.5 9.4 6.4e+02 0.1 6.5 2.1 1 1 0 1 1 1 0 COG (conserved oligomeric Golgi) complex component, COG2 Ax_dynein_light PF10211.4 gi|57640578|ref|YP_183056.1| - 7.2 6.4 13.2 1.2 8.8 5.1 1.9 1 1 1 2 2 2 0 Axonemal dynein light chain GAS PF13851.1 gi|57640578|ref|YP_183056.1| - 7.6 5.6 16.4 1.6 7.8 4.2 2.0 1 1 0 2 2 2 0 Growth-arrest specific micro-tubule binding DUF2203 PF09969.4 gi|57640578|ref|YP_183056.1| - 7.8 6.7 9.1 14 5.9 2.5 2.1 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2203) PspA_IM30 PF04012.7 gi|57640578|ref|YP_183056.1| - 8 5.7 17.7 35 3.6 12.3 1.8 1 1 0 1 1 1 0 PspA/IM30 family Syntaxin PF00804.20 gi|57640578|ref|YP_183056.1| - 8.3 6.6 11.1 66 3.7 7.7 2.0 1 1 0 1 1 1 0 Syntaxin DUF2730 PF10805.3 gi|57640578|ref|YP_183056.1| - 8.5 6.1 9.3 1.7 8.3 2.5 2.2 1 1 0 2 2 2 0 Protein of unknown function (DUF2730) ATG16 PF08614.6 gi|57640578|ref|YP_183056.1| - 8.5 6.1 14.5 58 3.4 10.0 1.9 1 1 0 1 1 1 0 Autophagy protein 16 (ATG16) Tropomyosin_1 PF12718.2 gi|57640578|ref|YP_183056.1| - 8.7 6.1 17.9 1.6e+02 2.0 12.4 2.0 1 1 0 1 1 1 0 Tropomyosin like DUF3194 PF11419.3 gi|57640579|ref|YP_183057.1| - 8.2e-43 144.5 5.5 9.6e-43 144.3 3.8 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3194) DHH PF01368.15 gi|57640580|ref|YP_183058.1| - 1.5e-15 57.0 0.0 2.6e-15 56.3 0.0 1.3 1 0 0 1 1 1 1 DHH family DHHA1 PF02272.14 gi|57640580|ref|YP_183058.1| - 3.8e-13 48.9 3.2 9.1e-13 47.7 2.2 1.7 1 0 0 1 1 1 1 DHHA1 domain LMWPc PF01451.16 gi|57640580|ref|YP_183058.1| - 0.13 12.5 0.3 0.42 10.9 0.0 1.9 2 0 0 2 2 2 0 Low molecular weight phosphotyrosine protein phosphatase zf-Di19 PF05605.7 gi|57640581|ref|YP_183059.1| - 8.2e-05 22.6 0.2 0.32 11.1 0.2 2.2 2 0 0 2 2 2 2 Drought induced 19 protein (Di19), zinc-binding zinc_ribbon_2 PF13240.1 gi|57640581|ref|YP_183059.1| - 0.00099 18.5 1.2 0.073 12.5 0.1 2.3 2 0 0 2 2 2 1 zinc-ribbon domain zf-ISL3 PF14690.1 gi|57640581|ref|YP_183059.1| - 0.0067 16.4 0.3 3 7.9 0.1 2.9 3 0 0 3 3 3 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 UPF0547 PF10571.4 gi|57640581|ref|YP_183059.1| - 0.0075 15.9 6.1 0.54 9.9 1.7 2.2 2 0 0 2 2 2 2 Uncharacterised protein family UPF0547 zf-C2H2 PF00096.21 gi|57640581|ref|YP_183059.1| - 0.0099 16.1 1.1 1.4 9.3 0.3 2.6 2 0 0 2 2 2 1 Zinc finger, C2H2 type zf-C2H2_4 PF13894.1 gi|57640581|ref|YP_183059.1| - 0.011 16.0 0.2 3.5 8.1 0.1 2.3 2 0 0 2 2 2 0 C2H2-type zinc finger DUF329 PF03884.9 gi|57640581|ref|YP_183059.1| - 0.016 14.7 0.1 2.7 7.6 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF329) zinc_ribbon_5 PF13719.1 gi|57640581|ref|YP_183059.1| - 0.017 14.6 0.5 0.78 9.3 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Rad50_zn_hook PF04423.9 gi|57640581|ref|YP_183059.1| - 0.018 14.5 1.3 0.73 9.3 0.0 2.7 2 1 0 2 2 2 0 Rad50 zinc hook motif Zn_Tnp_IS1595 PF12760.2 gi|57640581|ref|YP_183059.1| - 0.018 14.8 0.1 0.42 10.4 0.0 2.3 2 0 0 2 2 2 0 Transposase zinc-ribbon domain Cys_rich_CPXG PF14255.1 gi|57640581|ref|YP_183059.1| - 0.031 14.0 2.0 0.67 9.8 0.4 2.4 2 0 0 2 2 2 0 Cysteine-rich CPXCG Trm112p PF03966.11 gi|57640581|ref|YP_183059.1| - 0.031 14.6 0.1 0.068 13.5 0.1 1.6 1 1 0 1 1 1 0 Trm112p-like protein zf-H2C2_2 PF13465.1 gi|57640581|ref|YP_183059.1| - 0.036 14.3 5.7 0.54 10.6 1.1 2.3 2 0 0 2 2 2 0 Zinc-finger double domain zinc_ribbon_4 PF13717.1 gi|57640581|ref|YP_183059.1| - 0.038 13.6 0.9 1.6 8.4 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain PhnA_Zn_Ribbon PF08274.7 gi|57640581|ref|YP_183059.1| - 0.055 13.2 1.7 1.3 8.8 0.1 2.2 2 0 0 2 2 2 0 PhnA Zinc-Ribbon CpXC PF14353.1 gi|57640581|ref|YP_183059.1| - 0.062 13.2 1.9 0.27 11.1 1.2 2.1 1 1 0 1 1 1 0 CpXC protein Zn-ribbon_8 PF09723.5 gi|57640581|ref|YP_183059.1| - 0.071 13.0 2.2 1.6 8.7 0.2 2.4 2 0 0 2 2 2 0 Zinc ribbon domain zf-DNA_Pol PF08996.5 gi|57640581|ref|YP_183059.1| - 0.076 12.3 0.1 0.24 10.7 0.0 1.8 2 0 0 2 2 2 0 DNA Polymerase alpha zinc finger Ogr_Delta PF04606.7 gi|57640581|ref|YP_183059.1| - 0.095 12.3 1.4 2.7 7.6 0.1 2.3 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger zf-FCS PF06467.9 gi|57640581|ref|YP_183059.1| - 0.097 12.3 0.1 1.4 8.6 0.0 2.2 2 0 0 2 2 2 0 MYM-type Zinc finger with FCS sequence motif zf-ribbon_3 PF13248.1 gi|57640581|ref|YP_183059.1| - 0.11 11.7 4.4 0.61 9.3 0.5 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Lar_restr_allev PF14354.1 gi|57640581|ref|YP_183059.1| - 0.12 12.6 2.5 0.48 10.7 1.7 1.9 1 1 0 1 1 1 0 Restriction alleviation protein Lar zf-C2H2_6 PF13912.1 gi|57640581|ref|YP_183059.1| - 0.12 12.2 1.2 0.86 9.5 0.0 2.3 2 0 0 2 2 2 0 C2H2-type zinc finger Desulfoferrod_N PF06397.7 gi|57640581|ref|YP_183059.1| - 0.14 11.5 2.9 0.72 9.2 0.1 2.5 2 1 0 2 2 2 0 Desulfoferrodoxin, N-terminal domain zf-C2HC_2 PF13913.1 gi|57640581|ref|YP_183059.1| - 0.19 11.4 5.0 1.4 8.6 0.8 2.3 2 0 0 2 2 2 0 zinc-finger of a C2HC-type zf-C4_Topoisom PF01396.14 gi|57640581|ref|YP_183059.1| - 0.2 11.1 1.8 5.5 6.5 0.1 2.4 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zf-NADH-PPase PF09297.6 gi|57640581|ref|YP_183059.1| - 0.45 10.0 3.2 2.1 7.9 0.2 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zf-RING_3 PF14369.1 gi|57640581|ref|YP_183059.1| - 1.1 9.2 3.8 1.7 8.7 0.4 2.2 2 0 0 2 2 2 0 zinc-finger DUF1610 PF07754.6 gi|57640581|ref|YP_183059.1| - 2.2 8.4 8.1 1.3 9.2 1.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) TPR_12 PF13424.1 gi|57640583|ref|YP_183061.1| - 0.0007 19.4 7.4 3.8 7.5 0.2 4.5 5 1 0 5 5 5 2 Tetratricopeptide repeat TPR_19 PF14559.1 gi|57640583|ref|YP_183061.1| - 0.029 14.7 0.0 0.22 11.8 0.0 2.5 2 0 0 2 2 2 0 Tetratricopeptide repeat PPR PF01535.15 gi|57640583|ref|YP_183061.1| - 0.13 12.3 0.3 5.1 7.2 0.0 3.7 3 0 0 3 3 3 0 PPR repeat PhoU PF01895.14 gi|57640583|ref|YP_183061.1| - 0.27 11.6 6.8 15 6.0 0.4 4.4 3 1 0 3 3 3 0 PhoU domain TPR_14 PF13428.1 gi|57640583|ref|YP_183061.1| - 0.42 11.3 4.5 18 6.3 0.0 5.0 4 2 2 6 6 6 0 Tetratricopeptide repeat TPR_10 PF13374.1 gi|57640583|ref|YP_183061.1| - 7 6.7 7.1 7.2 6.6 0.0 3.9 4 0 0 4 4 4 0 Tetratricopeptide repeat tRNA_bind PF01588.15 gi|57640584|ref|YP_183062.1| - 1.2e-20 73.1 0.1 2.1e-20 72.3 0.0 1.4 1 0 0 1 1 1 1 Putative tRNA binding domain Rubrerythrin PF02915.12 gi|57640585|ref|YP_183063.1| - 3.6e-32 111.5 5.0 4.2e-32 111.3 3.4 1.0 1 0 0 1 1 1 1 Rubrerythrin Ferritin_2 PF13668.1 gi|57640585|ref|YP_183063.1| - 0.002 18.0 1.2 0.022 14.7 0.5 2.1 1 1 0 1 1 1 1 Ferritin-like domain DUF2383 PF09537.5 gi|57640585|ref|YP_183063.1| - 0.041 14.1 1.2 0.18 12.0 0.0 2.2 2 1 0 2 2 2 0 Domain of unknown function (DUF2383) FadR_C PF07840.7 gi|57640585|ref|YP_183063.1| - 0.046 13.3 0.2 0.34 10.5 0.0 2.0 2 0 0 2 2 2 0 FadR C-terminal domain Mn_catalase PF05067.7 gi|57640585|ref|YP_183063.1| - 0.061 12.0 0.8 1.7 7.3 0.0 2.0 1 1 1 2 2 2 0 Manganese containing catalase DUF896 PF05979.7 gi|57640585|ref|YP_183063.1| - 0.4 10.3 2.0 0.31 10.6 0.2 1.7 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF896) GFO_IDH_MocA PF01408.17 gi|57640586|ref|YP_183064.1| - 1.8e-22 80.1 0.4 3e-22 79.3 0.3 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|57640586|ref|YP_183064.1| - 3.6e-09 36.4 0.1 7.2e-09 35.4 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain Semialdhyde_dh PF01118.19 gi|57640586|ref|YP_183064.1| - 0.0067 16.7 0.1 0.012 15.9 0.1 1.5 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain OCD_Mu_crystall PF02423.10 gi|57640586|ref|YP_183064.1| - 0.043 12.5 0.1 0.063 12.0 0.1 1.3 1 0 0 1 1 1 0 Ornithine cyclodeaminase/mu-crystallin family Zip PF02535.17 gi|57640587|ref|YP_183065.1| - 4e-32 111.4 23.2 5.6e-27 94.5 2.7 3.0 1 1 2 3 3 3 3 ZIP Zinc transporter E1-E2_ATPase PF00122.15 gi|57640587|ref|YP_183065.1| - 5.4 5.9 7.4 5.6 5.9 3.3 2.5 1 1 1 2 2 2 0 E1-E2 ATPase SRP54 PF00448.17 gi|57640588|ref|YP_183066.1| - 5e-80 267.5 0.1 5e-80 267.5 0.1 1.8 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain SRP54_N PF02881.14 gi|57640588|ref|YP_183066.1| - 1.6e-13 50.5 6.0 1.6e-13 50.5 4.2 2.7 2 1 0 2 2 2 1 SRP54-type protein, helical bundle domain MobB PF03205.9 gi|57640588|ref|YP_183066.1| - 4.8e-10 39.2 1.7 3.9e-07 29.8 0.1 2.6 1 1 1 2 2 2 2 Molybdopterin guanine dinucleotide synthesis protein B CbiA PF01656.18 gi|57640588|ref|YP_183066.1| - 8.6e-08 31.8 1.2 8.6e-08 31.8 0.9 2.2 2 2 0 2 2 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Abhydrolase_5 PF12695.2 gi|57640588|ref|YP_183066.1| - 5.9e-07 29.3 0.3 0.00015 21.5 0.0 2.2 1 1 1 2 2 2 1 Alpha/beta hydrolase family ArgK PF03308.11 gi|57640588|ref|YP_183066.1| - 9.6e-07 27.8 0.1 3.5e-06 25.9 0.1 2.0 1 1 0 1 1 1 1 ArgK protein AAA_30 PF13604.1 gi|57640588|ref|YP_183066.1| - 1.1e-06 28.3 0.5 2.6e-06 27.1 0.3 1.6 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|57640588|ref|YP_183066.1| - 1.2e-06 28.6 0.2 6.3e-06 26.3 0.0 2.1 2 1 0 2 2 2 1 AAA domain cobW PF02492.14 gi|57640588|ref|YP_183066.1| - 3.2e-06 26.7 0.1 6.8e-06 25.6 0.1 1.5 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_33 PF13671.1 gi|57640588|ref|YP_183066.1| - 1.1e-05 25.2 0.1 2.7e-05 24.0 0.0 1.7 2 0 0 2 2 1 1 AAA domain Peripla_BP_4 PF13407.1 gi|57640588|ref|YP_183066.1| - 7.5e-05 22.2 4.1 0.13 11.5 0.1 3.1 1 1 2 3 3 3 2 Periplasmic binding protein domain Zeta_toxin PF06414.7 gi|57640588|ref|YP_183066.1| - 8e-05 21.8 0.1 0.00016 20.8 0.1 1.4 1 0 0 1 1 1 1 Zeta toxin VirC1 PF07015.6 gi|57640588|ref|YP_183066.1| - 0.00026 20.1 0.0 0.0005 19.2 0.0 1.4 1 0 0 1 1 1 1 VirC1 protein APS_kinase PF01583.15 gi|57640588|ref|YP_183066.1| - 0.00057 19.5 0.1 0.0035 17.0 0.0 2.2 2 0 0 2 2 2 1 Adenylylsulphate kinase Thymidylate_kin PF02223.12 gi|57640588|ref|YP_183066.1| - 0.0012 18.2 2.5 0.0018 17.7 0.0 2.6 2 2 0 2 2 2 1 Thymidylate kinase ABC_tran PF00005.22 gi|57640588|ref|YP_183066.1| - 0.0013 19.0 0.5 0.012 15.9 0.0 2.2 2 0 0 2 2 2 1 ABC transporter MMR_HSR1 PF01926.18 gi|57640588|ref|YP_183066.1| - 0.0013 18.6 1.5 0.0017 18.3 0.1 1.9 2 1 0 2 2 2 1 50S ribosome-binding GTPase AAA_17 PF13207.1 gi|57640588|ref|YP_183066.1| - 0.0043 17.8 1.4 0.015 16.0 0.0 2.3 2 1 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|57640588|ref|YP_183066.1| - 0.0046 16.9 0.5 0.014 15.3 0.0 2.0 1 1 1 2 2 2 1 AAA ATPase domain Fe-ADH PF00465.14 gi|57640588|ref|YP_183066.1| - 0.0072 15.0 0.9 0.12 11.0 0.4 2.4 1 1 1 2 2 2 1 Iron-containing alcohol dehydrogenase AAA_19 PF13245.1 gi|57640588|ref|YP_183066.1| - 0.0075 15.9 0.1 0.027 14.2 0.0 2.0 1 1 0 1 1 1 1 Part of AAA domain DUF2325 PF10087.4 gi|57640588|ref|YP_183066.1| - 0.008 15.9 0.1 6.7 6.6 0.0 3.7 1 1 2 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2325) AAA_28 PF13521.1 gi|57640588|ref|YP_183066.1| - 0.01 15.8 0.1 0.027 14.4 0.1 1.8 1 1 0 1 1 1 0 AAA domain NTPase_1 PF03266.10 gi|57640588|ref|YP_183066.1| - 0.01 15.5 8.0 0.11 12.1 0.7 3.7 2 1 1 3 3 3 0 NTPase NB-ARC PF00931.17 gi|57640588|ref|YP_183066.1| - 0.011 14.5 0.0 0.025 13.4 0.0 1.6 1 0 0 1 1 1 0 NB-ARC domain DUF2855 PF11017.3 gi|57640588|ref|YP_183066.1| - 0.011 14.8 0.0 0.024 13.8 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2855) KTI12 PF08433.5 gi|57640588|ref|YP_183066.1| - 0.012 14.8 0.0 0.028 13.6 0.0 1.6 1 0 0 1 1 1 0 Chromatin associated protein KTI12 6PF2K PF01591.13 gi|57640588|ref|YP_183066.1| - 0.015 14.3 0.0 0.033 13.2 0.0 1.5 1 0 0 1 1 1 0 6-phosphofructo-2-kinase LpxK PF02606.9 gi|57640588|ref|YP_183066.1| - 0.017 14.1 0.2 0.2 10.5 0.0 2.2 2 0 0 2 2 2 0 Tetraacyldisaccharide-1-P 4'-kinase CoA_binding_2 PF13380.1 gi|57640588|ref|YP_183066.1| - 0.017 15.2 0.3 0.5 10.5 0.0 2.7 3 0 0 3 3 2 0 CoA binding domain TrwB_AAD_bind PF10412.4 gi|57640588|ref|YP_183066.1| - 0.019 13.6 0.0 0.036 12.6 0.0 1.5 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain Glyco_transf_4 PF13439.1 gi|57640588|ref|YP_183066.1| - 0.031 13.9 0.0 7.9 6.1 0.0 2.3 1 1 1 2 2 2 0 Glycosyltransferase Family 4 ATP_bind_1 PF03029.12 gi|57640588|ref|YP_183066.1| - 0.037 13.5 0.1 0.16 11.5 0.1 2.1 1 1 0 1 1 1 0 Conserved hypothetical ATP binding protein Miro PF08477.8 gi|57640588|ref|YP_183066.1| - 0.039 14.4 0.2 0.16 12.4 0.0 2.1 2 1 0 2 2 1 0 Miro-like protein Toprim_Crpt PF13342.1 gi|57640588|ref|YP_183066.1| - 0.051 13.2 0.6 0.051 13.2 0.4 1.8 2 0 0 2 2 1 0 C-terminal repeat of topoisomerase Peripla_BP_6 PF13458.1 gi|57640588|ref|YP_183066.1| - 0.055 12.8 0.6 1.1 8.5 0.3 2.1 1 1 1 2 2 2 0 Periplasmic binding protein Glyco_trans_4_2 PF13477.1 gi|57640588|ref|YP_183066.1| - 0.062 13.1 0.1 0.82 9.4 0.0 2.2 1 1 1 2 2 2 0 Glycosyl transferase 4-like CbiJ PF02571.9 gi|57640588|ref|YP_183066.1| - 0.066 12.5 0.1 0.14 11.5 0.1 1.6 1 1 0 1 1 1 0 Precorrin-6x reductase CbiJ/CobK AAA_10 PF12846.2 gi|57640588|ref|YP_183066.1| - 0.08 12.3 1.0 0.14 11.5 0.1 2.0 2 1 0 2 2 2 0 AAA-like domain Pox_A32 PF04665.7 gi|57640588|ref|YP_183066.1| - 0.087 12.1 0.0 0.18 11.0 0.0 1.5 1 0 0 1 1 1 0 Poxvirus A32 protein TSNR_N PF04705.7 gi|57640588|ref|YP_183066.1| - 0.09 12.5 0.0 0.19 11.5 0.0 1.5 1 0 0 1 1 1 0 Thiostrepton-resistance methylase, N terminus Mur_ligase_M PF08245.7 gi|57640588|ref|YP_183066.1| - 0.12 12.3 0.4 0.3 11.0 0.1 2.0 2 1 0 2 2 1 0 Mur ligase middle domain CobN-Mg_chel PF02514.11 gi|57640588|ref|YP_183066.1| - 0.18 9.1 3.0 0.1 9.9 0.0 1.9 1 1 0 2 2 2 0 CobN/Magnesium Chelatase FACT-Spt16_Nlob PF14826.1 gi|57640588|ref|YP_183066.1| - 0.19 11.2 4.6 0.11 12.0 0.3 2.4 3 0 0 3 3 2 0 FACT complex subunit SPT16 N-terminal lobe domain PHP PF02811.14 gi|57640588|ref|YP_183066.1| - 0.44 10.3 2.2 0.63 9.8 0.1 2.1 2 0 0 2 2 2 0 PHP domain Rota_NSP3 PF01665.11 gi|57640588|ref|YP_183066.1| - 1.4 7.7 8.6 2.1 7.2 0.1 2.9 2 1 0 2 2 2 0 Rotavirus non-structural protein NSP3 DUF87 PF01935.12 gi|57640588|ref|YP_183066.1| - 2.3 7.9 8.3 1.8 8.3 0.2 2.4 1 1 1 2 2 2 0 Domain of unknown function DUF87 OrfB_Zn_ribbon PF07282.6 gi|57640589|ref|YP_183067.1| - 3.7e-17 61.7 0.1 7.3e-17 60.7 0.1 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|57640589|ref|YP_183067.1| - 9.5e-12 44.7 2.3 2e-11 43.7 1.6 1.5 1 0 0 1 1 1 1 Probable transposase Prok-RING_1 PF14446.1 gi|57640589|ref|YP_183067.1| - 0.002 17.8 0.1 0.0031 17.2 0.1 1.2 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 Ribosomal_L32p PF01783.18 gi|57640589|ref|YP_183067.1| - 0.021 15.0 0.1 0.057 13.6 0.1 1.8 1 0 0 1 1 1 0 Ribosomal L32p protein family RNA_POL_M_15KD PF02150.11 gi|57640589|ref|YP_183067.1| - 0.023 14.3 0.4 0.044 13.4 0.3 1.4 1 0 0 1 1 1 0 RNA polymerases M/15 Kd subunit DZR PF12773.2 gi|57640589|ref|YP_183067.1| - 0.023 14.5 0.4 0.04 13.7 0.3 1.3 1 0 0 1 1 1 0 Double zinc ribbon Auto_anti-p27 PF06677.7 gi|57640589|ref|YP_183067.1| - 0.037 13.7 0.3 0.063 13.0 0.2 1.3 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zinc-ribbons_6 PF07191.7 gi|57640589|ref|YP_183067.1| - 0.045 13.5 0.2 0.081 12.7 0.2 1.4 1 0 0 1 1 1 0 zinc-ribbons DNA_ligase_ZBD PF03119.11 gi|57640589|ref|YP_183067.1| - 0.068 12.8 0.8 0.15 11.8 0.6 1.5 1 0 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain DUF2525 PF10733.4 gi|57640589|ref|YP_183067.1| - 0.071 12.9 0.1 0.16 11.8 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2525) RRN7 PF11781.3 gi|57640589|ref|YP_183067.1| - 0.091 12.2 1.6 0.18 11.3 1.1 1.5 1 0 0 1 1 1 0 RNA polymerase I-specific transcription initiation factor Rrn7 TF_Zn_Ribbon PF08271.7 gi|57640589|ref|YP_183067.1| - 0.23 10.7 5.7 0.05 12.9 1.0 2.1 2 0 0 2 2 2 0 TFIIB zinc-binding zf-ribbon_3 PF13248.1 gi|57640589|ref|YP_183067.1| - 1.6 8.0 4.9 8.5 5.7 3.5 2.0 1 1 0 1 1 1 0 zinc-ribbon domain Resolvase PF00239.16 gi|57640590|ref|YP_183068.1| - 1.8e-21 76.5 0.1 2.3e-21 76.1 0.0 1.2 1 0 0 1 1 1 1 Resolvase, N terminal domain HTH_17 PF12728.2 gi|57640590|ref|YP_183068.1| - 8.3e-12 45.1 1.5 9.9e-12 44.9 0.1 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain MerR PF00376.18 gi|57640590|ref|YP_183068.1| - 5.8e-11 41.7 0.4 2.2e-10 39.8 0.0 2.2 2 1 0 2 2 2 1 MerR family regulatory protein MerR_1 PF13411.1 gi|57640590|ref|YP_183068.1| - 7.9e-10 38.3 0.4 2.1e-09 37.0 0.1 1.9 2 0 0 2 2 2 1 MerR HTH family regulatory protein HTH_23 PF13384.1 gi|57640590|ref|YP_183068.1| - 5.2e-05 22.7 0.5 0.00055 19.4 0.0 2.6 3 0 0 3 3 3 1 Homeodomain-like domain HTH_28 PF13518.1 gi|57640590|ref|YP_183068.1| - 0.0045 16.9 0.3 0.015 15.2 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_29 PF13551.1 gi|57640590|ref|YP_183068.1| - 0.009 16.1 0.2 0.034 14.3 0.1 2.0 1 1 1 2 2 2 1 Winged helix-turn helix ArsC PF03960.10 gi|57640590|ref|YP_183068.1| - 0.012 15.6 1.0 0.054 13.5 0.1 2.2 2 0 0 2 2 2 0 ArsC family Terminase_5 PF06056.7 gi|57640590|ref|YP_183068.1| - 0.039 13.5 0.5 0.14 11.7 0.1 2.0 2 0 0 2 2 2 0 Putative ATPase subunit of terminase (gpP-like) Phage_Nu1 PF07471.7 gi|57640590|ref|YP_183068.1| - 0.049 13.1 0.1 0.14 11.6 0.0 1.7 2 0 0 2 2 2 0 Phage DNA packaging protein Nu1 GAD PF02938.9 gi|57640590|ref|YP_183068.1| - 0.12 12.4 1.1 1.1 9.4 0.1 2.7 1 1 2 3 3 3 0 GAD domain CK_II_beta PF01214.13 gi|57640590|ref|YP_183068.1| - 0.13 11.7 0.1 0.37 10.2 0.1 1.7 1 1 0 1 1 1 0 Casein kinase II regulatory subunit Bmp PF02608.9 gi|57640592|ref|YP_183070.1| - 3.6e-63 213.1 6.7 7.8e-39 133.2 0.1 2.4 2 1 0 2 2 2 2 Basic membrane protein Peripla_BP_1 PF00532.16 gi|57640592|ref|YP_183070.1| - 0.014 14.6 0.0 0.043 13.0 0.0 1.9 2 1 0 2 2 2 0 Periplasmic binding proteins and sugar binding domain of LacI family DHquinase_II PF01220.14 gi|57640592|ref|YP_183070.1| - 0.1 11.9 0.0 2.4 7.4 0.0 2.3 2 0 0 2 2 2 0 Dehydroquinase class II Endonuclease_NS PF01223.18 gi|57640592|ref|YP_183070.1| - 0.46 10.0 2.4 6.2 6.3 0.4 2.4 1 1 1 2 2 2 0 DNA/RNA non-specific endonuclease ABC_tran PF00005.22 gi|57640593|ref|YP_183071.1| - 6e-47 159.3 0.0 3.6e-28 98.5 0.0 2.2 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|57640593|ref|YP_183071.1| - 6.7e-11 42.6 1.3 0.00026 21.0 0.0 2.5 1 1 1 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|57640593|ref|YP_183071.1| - 0.00023 20.6 0.1 0.048 13.1 0.1 3.0 3 0 0 3 3 3 1 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|57640593|ref|YP_183071.1| - 0.0015 17.6 0.2 0.1 11.6 0.0 2.2 1 1 1 2 2 2 1 AAA ATPase domain Bac_DnaA PF00308.13 gi|57640593|ref|YP_183071.1| - 0.0035 17.0 0.1 0.0035 17.0 0.0 2.4 3 0 0 3 3 3 1 Bacterial dnaA protein UPF0079 PF02367.12 gi|57640593|ref|YP_183071.1| - 0.011 15.4 0.1 0.031 13.9 0.1 1.8 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_16 PF13191.1 gi|57640593|ref|YP_183071.1| - 0.017 15.0 0.0 0.046 13.7 0.0 1.8 1 1 0 1 1 1 0 AAA ATPase domain SMC_N PF02463.14 gi|57640593|ref|YP_183071.1| - 0.019 14.1 1.7 7 5.8 0.0 3.2 3 0 0 3 3 3 0 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|57640593|ref|YP_183071.1| - 0.032 14.5 0.1 0.071 13.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|57640593|ref|YP_183071.1| - 0.055 12.6 0.2 0.76 8.9 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function, DUF258 AAA_14 PF13173.1 gi|57640593|ref|YP_183071.1| - 0.061 13.2 0.1 6.3 6.7 0.0 2.7 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.1 gi|57640593|ref|YP_183071.1| - 0.088 12.9 0.7 0.56 10.3 0.5 2.2 1 1 0 1 1 1 0 AAA domain DUF3882 PF07066.6 gi|57640593|ref|YP_183071.1| - 0.13 12.1 0.0 0.26 11.1 0.0 1.5 1 0 0 1 1 1 0 Lactococcus phage M3 protein AAA_10 PF12846.2 gi|57640593|ref|YP_183071.1| - 0.38 10.1 1.4 0.72 9.2 0.1 2.0 3 0 0 3 3 3 0 AAA-like domain BPD_transp_2 PF02653.11 gi|57640594|ref|YP_183072.1| - 3.3e-46 157.4 27.8 3.3e-46 157.4 19.2 2.0 2 0 0 2 2 2 2 Branched-chain amino acid transport system / permease component Vpu PF00558.14 gi|57640594|ref|YP_183072.1| - 0.7 9.4 3.1 15 5.2 0.2 2.7 2 0 0 2 2 2 0 Vpu protein BPD_transp_2 PF02653.11 gi|57640595|ref|YP_183073.1| - 5e-41 140.4 30.1 6.2e-41 140.1 20.8 1.1 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component DUF202 PF02656.10 gi|57640595|ref|YP_183073.1| - 0.73 10.0 0.0 0.73 10.0 0.0 3.0 2 2 1 3 3 3 0 Domain of unknown function (DUF202) TroA PF01297.12 gi|57640596|ref|YP_183074.1| - 3.9e-34 118.0 0.3 4.6e-34 117.8 0.2 1.1 1 0 0 1 1 1 1 Periplasmic solute binding protein family NTP_transf_3 PF12804.2 gi|57640596|ref|YP_183074.1| - 0.011 15.7 0.0 0.026 14.6 0.0 1.5 1 0 0 1 1 1 0 MobA-like NTP transferase domain S_layer_C PF05124.7 gi|57640597|ref|YP_183075.1| - 0.14 11.7 0.0 0.48 10.0 0.0 1.8 1 1 0 1 1 1 0 S-layer like family, C-terminal region Mucin PF01456.12 gi|57640597|ref|YP_183075.1| - 1.1 8.9 28.5 2 8.2 19.8 1.3 1 0 0 1 1 1 0 Mucin-like glycoprotein Pribosyltran PF00156.22 gi|57640599|ref|YP_183077.1| - 3.6e-22 78.3 0.0 6.7e-22 77.5 0.0 1.4 1 0 0 1 1 1 1 Phosphoribosyl transferase domain FlhC PF05280.6 gi|57640599|ref|YP_183077.1| - 0.012 15.1 0.0 0.018 14.4 0.0 1.2 1 0 0 1 1 1 0 Flagellar transcriptional activator (FlhC) Succ_CoA_lig PF13607.1 gi|57640600|ref|YP_183078.1| - 5.4e-57 191.2 0.5 3.3e-56 188.7 0.1 2.3 3 0 0 3 3 3 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.1 gi|57640600|ref|YP_183078.1| - 1.1e-23 83.5 0.2 8.3e-22 77.5 0.1 2.6 2 0 0 2 2 2 1 CoA binding domain CoA_binding PF02629.14 gi|57640600|ref|YP_183078.1| - 1.1e-20 73.9 1.6 3.8e-20 72.1 0.5 2.4 2 0 0 2 2 2 1 CoA binding domain F420_oxidored PF03807.12 gi|57640600|ref|YP_183078.1| - 0.067 13.6 0.3 0.59 10.6 0.0 2.5 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent NAD_Gly3P_dh_N PF01210.18 gi|57640600|ref|YP_183078.1| - 0.099 12.3 0.0 0.47 10.1 0.0 2.2 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus SapB_1 PF05184.10 gi|57640601|ref|YP_183079.1| - 0.16 11.8 0.0 0.33 10.8 0.0 1.4 1 0 0 1 1 1 0 Saposin-like type B, region 1 Metallophos_2 PF12850.2 gi|57640602|ref|YP_183080.1| - 6.9e-33 113.6 0.0 8.5e-33 113.3 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|57640602|ref|YP_183080.1| - 3e-10 39.8 0.2 6.7e-10 38.6 0.1 1.5 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase PRC PF05239.11 gi|57640603|ref|YP_183081.1| - 1e-13 50.9 1.4 1.2e-13 50.6 1.0 1.1 1 0 0 1 1 1 1 PRC-barrel domain AAA PF00004.24 gi|57640604|ref|YP_183082.1| - 1.5e-103 342.3 0.5 3.7e-51 172.7 0.0 3.3 4 0 0 4 4 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.13 gi|57640604|ref|YP_183082.1| - 9.1e-30 102.4 0.4 1.6e-28 98.4 0.5 2.9 3 0 0 3 3 2 1 Cell division protein 48 (CDC48), N-terminal domain AAA_16 PF13191.1 gi|57640604|ref|YP_183082.1| - 1.1e-17 64.6 0.3 8.9e-08 32.3 0.0 3.6 3 1 0 3 3 3 2 AAA ATPase domain RuvB_N PF05496.7 gi|57640604|ref|YP_183082.1| - 2.9e-17 62.4 0.0 1.4e-08 34.0 0.0 2.6 2 0 0 2 2 2 2 Holliday junction DNA helicase ruvB N-terminus AAA_22 PF13401.1 gi|57640604|ref|YP_183082.1| - 3.8e-17 62.6 0.2 1.3e-05 25.2 0.0 4.5 2 2 0 2 2 2 2 AAA domain AAA_2 PF07724.9 gi|57640604|ref|YP_183082.1| - 5.7e-17 62.1 0.1 1.7e-08 34.6 0.0 3.0 3 0 0 3 3 3 2 AAA domain (Cdc48 subfamily) CDC48_2 PF02933.12 gi|57640604|ref|YP_183082.1| - 6.1e-16 57.8 0.8 1.5e-15 56.5 0.5 1.7 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), domain 2 TIP49 PF06068.8 gi|57640604|ref|YP_183082.1| - 4e-13 48.8 0.1 5.6e-05 22.0 0.0 3.5 3 0 0 3 3 3 2 TIP49 C-terminus AAA_5 PF07728.9 gi|57640604|ref|YP_183082.1| - 6e-13 48.7 0.6 2.7e-05 23.9 0.1 3.9 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_14 PF13173.1 gi|57640604|ref|YP_183082.1| - 7.6e-13 48.4 0.0 9.3e-06 25.5 0.0 2.7 3 0 0 3 3 2 2 AAA domain AAA_17 PF13207.1 gi|57640604|ref|YP_183082.1| - 4.3e-12 46.8 2.4 1.8e-05 25.5 0.6 3.6 2 2 0 2 2 2 2 AAA domain Zeta_toxin PF06414.7 gi|57640604|ref|YP_183082.1| - 1.9e-11 43.4 0.0 2.5e-05 23.4 0.0 2.6 2 0 0 2 2 2 2 Zeta toxin AAA_33 PF13671.1 gi|57640604|ref|YP_183082.1| - 2.3e-11 43.7 0.0 0.00019 21.2 0.0 2.7 2 0 0 2 2 2 2 AAA domain AAA_19 PF13245.1 gi|57640604|ref|YP_183082.1| - 2.7e-09 36.6 0.3 0.0028 17.3 0.1 3.1 2 0 0 2 2 2 2 Part of AAA domain IstB_IS21 PF01695.12 gi|57640604|ref|YP_183082.1| - 2.9e-09 36.5 0.0 0.0022 17.4 0.0 2.7 2 0 0 2 2 2 2 IstB-like ATP binding protein Bac_DnaA PF00308.13 gi|57640604|ref|YP_183082.1| - 6.8e-08 32.4 0.0 0.00077 19.1 0.0 2.7 2 0 0 2 2 2 2 Bacterial dnaA protein Sigma54_activat PF00158.21 gi|57640604|ref|YP_183082.1| - 7.3e-08 32.0 0.1 0.0082 15.6 0.0 3.7 3 1 0 3 3 3 2 Sigma-54 interaction domain Arch_ATPase PF01637.13 gi|57640604|ref|YP_183082.1| - 9e-08 32.0 6.8 0.00021 21.0 0.0 4.3 4 1 0 4 4 4 2 Archaeal ATPase AAA_28 PF13521.1 gi|57640604|ref|YP_183082.1| - 1.3e-07 31.7 0.1 0.023 14.6 0.0 2.9 3 0 0 3 3 2 2 AAA domain RNA_helicase PF00910.17 gi|57640604|ref|YP_183082.1| - 2.2e-07 31.0 0.0 0.025 14.7 0.0 2.7 2 0 0 2 2 2 2 RNA helicase AAA_18 PF13238.1 gi|57640604|ref|YP_183082.1| - 2.4e-07 31.0 3.9 0.019 15.2 0.0 3.9 4 0 0 4 4 3 2 AAA domain NACHT PF05729.7 gi|57640604|ref|YP_183082.1| - 2.9e-07 30.3 0.1 0.4 10.3 0.0 4.2 4 0 0 4 4 4 2 NACHT domain AAA_24 PF13479.1 gi|57640604|ref|YP_183082.1| - 3.1e-07 30.2 0.0 0.017 14.6 0.0 2.6 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.16 gi|57640604|ref|YP_183082.1| - 4.5e-07 29.2 0.1 0.032 13.3 0.0 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI DUF815 PF05673.8 gi|57640604|ref|YP_183082.1| - 9e-07 28.0 0.0 0.021 13.7 0.0 2.5 2 0 0 2 2 2 2 Protein of unknown function (DUF815) AAA_25 PF13481.1 gi|57640604|ref|YP_183082.1| - 1.4e-06 27.9 9.5 0.48 9.8 0.1 4.6 2 2 1 4 4 4 2 AAA domain Sigma54_activ_2 PF14532.1 gi|57640604|ref|YP_183082.1| - 4.3e-06 26.8 0.0 0.078 13.0 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain NB-ARC PF00931.17 gi|57640604|ref|YP_183082.1| - 5.8e-06 25.3 0.0 0.19 10.5 0.0 3.1 3 0 0 3 3 3 2 NB-ARC domain ABC_tran PF00005.22 gi|57640604|ref|YP_183082.1| - 6.5e-06 26.4 0.0 0.11 12.8 0.0 3.0 2 0 0 2 2 2 2 ABC transporter KaiC PF06745.8 gi|57640604|ref|YP_183082.1| - 1.1e-05 24.6 2.7 0.43 9.6 0.0 4.3 2 2 2 4 4 4 2 KaiC NTPase_1 PF03266.10 gi|57640604|ref|YP_183082.1| - 1.6e-05 24.6 2.3 1.9 8.1 0.0 4.7 2 2 2 4 4 4 2 NTPase PhoH PF02562.11 gi|57640604|ref|YP_183082.1| - 2.2e-05 23.8 0.3 0.22 10.7 0.0 2.7 2 0 0 2 2 2 2 PhoH-like protein AAA_3 PF07726.6 gi|57640604|ref|YP_183082.1| - 3.7e-05 23.3 0.0 0.24 11.0 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) Parvo_NS1 PF01057.12 gi|57640604|ref|YP_183082.1| - 5.8e-05 22.1 0.0 0.3 9.9 0.0 2.3 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 DUF2075 PF09848.4 gi|57640604|ref|YP_183082.1| - 7.4e-05 21.8 0.0 0.14 11.0 0.0 2.3 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) SKI PF01202.17 gi|57640604|ref|YP_183082.1| - 0.00014 21.7 0.4 0.75 9.6 0.0 3.8 4 0 0 4 4 3 1 Shikimate kinase AAA_11 PF13086.1 gi|57640604|ref|YP_183082.1| - 0.00015 21.4 0.0 0.23 11.0 0.0 2.7 2 1 0 2 2 2 2 AAA domain ATP-synt_ab PF00006.20 gi|57640604|ref|YP_183082.1| - 0.0003 20.3 0.0 0.77 9.2 0.0 2.4 2 0 0 2 2 2 2 ATP synthase alpha/beta family, nucleotide-binding domain T2SE PF00437.15 gi|57640604|ref|YP_183082.1| - 0.0017 17.3 0.0 1.6 7.5 0.0 2.6 3 0 0 3 3 2 2 Type II/IV secretion system protein AAA_30 PF13604.1 gi|57640604|ref|YP_183082.1| - 0.0017 17.9 0.0 2.6 7.5 0.0 2.8 2 0 0 2 2 2 1 AAA domain Vps4_C PF09336.5 gi|57640604|ref|YP_183082.1| - 0.002 17.9 0.2 0.098 12.5 0.0 2.9 3 0 0 3 3 2 1 Vps4 C terminal oligomerisation domain Viral_helicase1 PF01443.13 gi|57640604|ref|YP_183082.1| - 0.0022 17.5 0.0 0.15 11.5 0.0 2.6 2 0 0 2 2 2 1 Viral (Superfamily 1) RNA helicase KAP_NTPase PF07693.9 gi|57640604|ref|YP_183082.1| - 0.0022 17.0 0.3 11 4.8 0.0 3.7 2 2 1 4 4 4 0 KAP family P-loop domain UPF0079 PF02367.12 gi|57640604|ref|YP_183082.1| - 0.0022 17.6 0.0 2.5 7.7 0.0 2.8 2 0 0 2 2 2 1 Uncharacterised P-loop hydrolase UPF0079 ResIII PF04851.10 gi|57640604|ref|YP_183082.1| - 0.0036 17.1 0.0 3.6 7.3 0.0 2.7 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit AFG1_ATPase PF03969.11 gi|57640604|ref|YP_183082.1| - 0.013 14.3 0.0 6.3 5.5 0.0 3.1 4 0 0 4 4 4 0 AFG1-like ATPase cobW PF02492.14 gi|57640604|ref|YP_183082.1| - 0.026 13.9 0.0 10 5.5 0.0 2.7 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain DAP3 PF10236.4 gi|57640604|ref|YP_183082.1| - 0.047 12.6 0.0 7.6 5.3 0.0 2.5 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 IPT PF01745.11 gi|57640604|ref|YP_183082.1| - 0.048 12.8 0.8 13 4.9 0.0 3.1 3 0 0 3 3 2 0 Isopentenyl transferase AAA_10 PF12846.2 gi|57640604|ref|YP_183082.1| - 0.078 12.4 3.5 6.7 6.0 0.4 4.0 2 2 0 3 3 3 0 AAA-like domain CPT PF07931.7 gi|57640604|ref|YP_183082.1| - 0.1 12.2 0.0 22 4.6 0.0 3.1 2 1 0 2 2 2 0 Chloramphenicol phosphotransferase-like protein AAA_23 PF13476.1 gi|57640604|ref|YP_183082.1| - 0.13 12.5 3.5 37 4.5 0.0 3.5 3 1 0 3 3 3 0 AAA domain Zot PF05707.7 gi|57640604|ref|YP_183082.1| - 0.14 11.6 1.3 42 3.5 0.1 4.0 2 2 0 2 2 2 0 Zonular occludens toxin (Zot) AAA_21 PF13304.1 gi|57640604|ref|YP_183082.1| - 0.51 10.2 3.0 28 4.5 0.4 3.3 2 2 1 3 3 3 0 AAA domain DS PF01916.12 gi|57640606|ref|YP_183084.1| - 3.9e-140 466.1 0.0 4.6e-140 465.9 0.0 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase Pyr_redox_2 PF07992.9 gi|57640607|ref|YP_183085.1| - 1.1e-16 61.3 0.0 1.9e-16 60.5 0.0 1.5 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|57640607|ref|YP_183085.1| - 2.1e-13 50.8 0.1 3.7e-08 33.6 0.0 2.4 2 1 1 3 3 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|57640607|ref|YP_183085.1| - 8.3e-12 45.3 7.5 8.7e-06 26.0 1.0 3.5 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|57640607|ref|YP_183085.1| - 2.1e-08 33.4 11.1 4.5e-05 22.5 0.4 4.0 3 1 1 4 4 4 3 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|57640607|ref|YP_183085.1| - 2.4e-07 30.6 0.4 2.4e-07 30.6 0.3 1.6 2 0 0 2 2 1 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.9 gi|57640607|ref|YP_183085.1| - 3e-05 22.6 0.3 6.4e-05 21.5 0.2 1.6 1 0 0 1 1 1 1 HI0933-like protein Thi4 PF01946.12 gi|57640607|ref|YP_183085.1| - 3.4e-05 23.0 0.1 7.2e-05 21.9 0.1 1.5 1 0 0 1 1 1 1 Thi4 family Shikimate_DH PF01488.15 gi|57640607|ref|YP_183085.1| - 0.00012 22.2 0.4 0.27 11.3 0.5 3.8 3 1 0 3 3 3 1 Shikimate / quinate 5-dehydrogenase FAD_binding_3 PF01494.14 gi|57640607|ref|YP_183085.1| - 0.00012 21.2 0.0 0.00021 20.4 0.0 1.3 1 0 0 1 1 1 1 FAD binding domain FAD_binding_2 PF00890.19 gi|57640607|ref|YP_183085.1| - 0.00013 20.9 0.4 0.00013 20.9 0.3 2.3 2 2 0 2 2 2 1 FAD binding domain NAD_binding_9 PF13454.1 gi|57640607|ref|YP_183085.1| - 0.00036 20.3 3.7 0.00093 18.9 0.1 2.9 3 1 1 4 4 4 1 FAD-NAD(P)-binding FMO-like PF00743.14 gi|57640607|ref|YP_183085.1| - 0.0023 16.1 0.0 0.15 10.2 0.0 2.2 2 0 0 2 2 2 1 Flavin-binding monooxygenase-like FAD_oxidored PF12831.2 gi|57640607|ref|YP_183085.1| - 0.0035 16.4 0.3 0.059 12.4 0.0 2.2 2 0 0 2 2 2 1 FAD dependent oxidoreductase NAD_binding_10 PF13460.1 gi|57640607|ref|YP_183085.1| - 0.011 15.8 0.1 5.7 6.9 0.1 2.6 2 1 0 2 2 2 0 NADH(P)-binding NAD_binding_7 PF13241.1 gi|57640607|ref|YP_183085.1| - 0.014 15.6 0.4 3.4 7.9 0.2 2.6 2 1 0 2 2 2 0 Putative NAD(P)-binding 2-Hacid_dh_C PF02826.14 gi|57640607|ref|YP_183085.1| - 0.015 14.4 0.4 13 4.8 0.1 3.1 3 0 0 3 3 3 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 3HCDH_N PF02737.13 gi|57640607|ref|YP_183085.1| - 0.02 14.5 1.3 0.08 12.5 0.1 2.1 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain K_oxygenase PF13434.1 gi|57640607|ref|YP_183085.1| - 0.031 13.1 0.0 0.85 8.4 0.0 2.3 3 0 0 3 3 3 0 L-lysine 6-monooxygenase (NADPH-requiring) AlaDh_PNT_C PF01262.16 gi|57640607|ref|YP_183085.1| - 0.06 12.9 0.0 0.33 10.4 0.0 2.1 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain GIDA PF01134.17 gi|57640607|ref|YP_183085.1| - 0.067 12.0 3.5 0.053 12.3 0.7 2.0 2 0 0 2 2 2 0 Glucose inhibited division protein A NAD_Gly3P_dh_N PF01210.18 gi|57640607|ref|YP_183085.1| - 0.14 11.8 1.9 0.48 10.1 0.0 2.3 3 0 0 3 3 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus adh_short_C2 PF13561.1 gi|57640608|ref|YP_183086.1| - 1e-15 58.1 0.0 1.3e-15 57.8 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.20 gi|57640608|ref|YP_183086.1| - 2.8e-13 50.1 0.0 4.7e-13 49.4 0.0 1.4 1 0 0 1 1 1 1 short chain dehydrogenase NAD_binding_10 PF13460.1 gi|57640608|ref|YP_183086.1| - 0.00018 21.5 0.0 0.00028 20.9 0.0 1.3 1 0 0 1 1 1 1 NADH(P)-binding KR PF08659.5 gi|57640608|ref|YP_183086.1| - 0.00019 21.1 0.0 0.00032 20.4 0.0 1.4 1 1 0 1 1 1 1 KR domain NmrA PF05368.8 gi|57640608|ref|YP_183086.1| - 0.0027 17.0 0.1 0.0056 15.9 0.1 1.5 2 0 0 2 2 2 1 NmrA-like family TrkA_N PF02254.13 gi|57640608|ref|YP_183086.1| - 0.03 14.3 0.1 0.086 12.8 0.0 1.7 1 0 0 1 1 1 0 TrkA-N domain NTP_transf_2 PF01909.18 gi|57640609|ref|YP_183087.1| - 4.8e-09 36.4 0.6 7.3e-09 35.8 0.4 1.5 1 1 0 1 1 1 1 Nucleotidyltransferase domain Radical_SAM PF04055.16 gi|57640610|ref|YP_183088.1| - 5.8e-16 59.1 0.1 2.3e-15 57.1 0.0 2.0 2 1 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|57640610|ref|YP_183088.1| - 7.9e-11 42.2 0.0 2.7e-10 40.5 0.0 1.9 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|57640610|ref|YP_183088.1| - 4.6e-10 39.5 0.1 1.7e-09 37.7 0.0 2.0 3 0 0 3 3 3 1 4Fe-4S single cluster domain SPASM PF13186.1 gi|57640610|ref|YP_183088.1| - 1.6e-05 25.1 0.3 5e-05 23.5 0.2 1.9 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain ABC_tran PF00005.22 gi|57640611|ref|YP_183089.1| - 1.4e-28 99.8 0.0 2.2e-28 99.2 0.0 1.3 1 0 0 1 1 1 1 ABC transporter ABC_membrane PF00664.18 gi|57640611|ref|YP_183089.1| - 6.7e-18 65.0 9.3 9.4e-18 64.5 6.4 1.2 1 0 0 1 1 1 1 ABC transporter transmembrane region AAA_21 PF13304.1 gi|57640611|ref|YP_183089.1| - 2.2e-06 27.8 5.2 0.013 15.5 0.0 3.8 3 1 1 4 4 4 2 AAA domain SMC_N PF02463.14 gi|57640611|ref|YP_183089.1| - 0.00015 21.0 1.4 0.00066 18.9 0.1 2.0 1 1 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|57640611|ref|YP_183089.1| - 0.00017 21.5 0.0 0.00036 20.5 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain SbcCD_C PF13558.1 gi|57640611|ref|YP_183089.1| - 0.0013 18.5 0.0 0.0025 17.6 0.0 1.4 1 0 0 1 1 1 1 Putative exonuclease SbcCD, C subunit DUF258 PF03193.11 gi|57640611|ref|YP_183089.1| - 0.0065 15.6 0.0 0.012 14.8 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 DEAD PF00270.24 gi|57640611|ref|YP_183089.1| - 0.0069 15.8 0.0 0.013 15.0 0.0 1.3 1 0 0 1 1 1 1 DEAD/DEAH box helicase IstB_IS21 PF01695.12 gi|57640611|ref|YP_183089.1| - 0.01 15.2 0.2 0.059 12.7 0.0 2.0 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_17 PF13207.1 gi|57640611|ref|YP_183089.1| - 0.036 14.8 1.9 0.088 13.6 0.4 2.3 2 0 0 2 2 2 0 AAA domain AAA PF00004.24 gi|57640611|ref|YP_183089.1| - 0.044 13.9 1.3 0.55 10.4 0.9 2.3 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|57640611|ref|YP_183089.1| - 0.082 13.0 2.5 1.8 8.7 0.2 2.5 2 0 0 2 2 2 0 AAA domain AAA_10 PF12846.2 gi|57640611|ref|YP_183089.1| - 0.091 12.1 4.8 2.8 7.2 0.5 2.3 2 0 0 2 2 2 0 AAA-like domain Mg_chelatase PF01078.16 gi|57640611|ref|YP_183089.1| - 0.12 11.5 0.4 0.25 10.4 0.0 1.7 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI ABC_membrane_3 PF13748.1 gi|57640611|ref|YP_183089.1| - 0.12 11.3 2.2 0.22 10.5 1.6 1.4 1 0 0 1 1 1 0 ABC transporter transmembrane region AAA_25 PF13481.1 gi|57640611|ref|YP_183089.1| - 0.13 11.6 0.6 0.38 10.1 0.4 1.8 1 1 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|57640611|ref|YP_183089.1| - 0.14 11.8 0.4 0.73 9.5 0.3 2.3 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_29 PF13555.1 gi|57640611|ref|YP_183089.1| - 0.16 11.5 0.1 0.36 10.3 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF1313 PF07011.6 gi|57640611|ref|YP_183089.1| - 0.16 11.6 0.0 0.43 10.2 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF1313) AAA_18 PF13238.1 gi|57640611|ref|YP_183089.1| - 0.43 10.8 3.2 2 8.7 2.2 2.2 1 1 0 1 1 1 0 AAA domain Peptidase_M48 PF01435.13 gi|57640612|ref|YP_183090.1| - 1.4e-37 129.4 0.0 1.7e-37 129.1 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.6 gi|57640612|ref|YP_183090.1| - 0.00063 18.7 0.0 0.0014 17.6 0.0 1.6 2 0 0 2 2 2 1 BlaR1 peptidase M56 ABC2_membrane_4 PF12730.2 gi|57640612|ref|YP_183090.1| - 0.039 13.1 8.5 2.2 7.4 4.2 2.2 2 0 0 2 2 2 0 ABC-2 family transporter protein DUF3661 PF12400.3 gi|57640612|ref|YP_183090.1| - 0.045 13.8 1.3 0.085 12.9 0.9 1.4 1 0 0 1 1 1 0 Vaculolar membrane protein DUF4129 PF13559.1 gi|57640612|ref|YP_183090.1| - 0.052 13.5 0.1 0.47 10.4 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4129) HipA_N PF07805.7 gi|57640612|ref|YP_183090.1| - 0.091 12.9 0.0 0.19 11.9 0.0 1.5 1 0 0 1 1 1 0 HipA-like N-terminal domain Abhydrolase_9_N PF15420.1 gi|57640612|ref|YP_183090.1| - 0.26 11.0 2.6 3.7 7.2 0.1 2.2 2 0 0 2 2 2 0 Alpha/beta-hydrolase family N-terminus UPF0118 PF01594.11 gi|57640612|ref|YP_183090.1| - 0.94 8.4 14.8 0.029 13.3 5.2 1.9 2 0 0 2 2 2 0 Domain of unknown function DUF20 Cpn60_TCP1 PF00118.19 gi|57640613|ref|YP_183091.1| - 5.1e-173 576.1 18.5 5.8e-173 575.9 12.8 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family AAA_5 PF07728.9 gi|57640613|ref|YP_183091.1| - 0.0046 16.6 0.5 0.14 11.8 0.0 2.4 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) Sec1 PF00995.18 gi|57640613|ref|YP_183091.1| - 0.012 14.2 0.4 0.04 12.5 0.0 1.8 1 1 1 2 2 2 0 Sec1 family DUF3924 PF13062.1 gi|57640613|ref|YP_183091.1| - 0.059 13.2 0.1 0.37 10.6 0.1 2.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3924) HK97-gp10_like PF04883.7 gi|57640613|ref|YP_183091.1| - 5.7 7.9 12.1 2.5 9.0 0.2 4.7 3 2 1 4 4 4 0 Bacteriophage HK97-gp10, putative tail-component RIO1 PF01163.17 gi|57640614|ref|YP_183092.1| - 2.3e-16 59.6 0.1 3.3e-16 59.1 0.1 1.2 1 0 0 1 1 1 1 RIO1 family Pkinase PF00069.20 gi|57640614|ref|YP_183092.1| - 1.5e-13 50.5 0.1 1.9e-13 50.1 0.1 1.2 1 0 0 1 1 1 1 Protein kinase domain Kdo PF06293.9 gi|57640614|ref|YP_183092.1| - 2.1e-13 49.8 0.1 3.2e-13 49.2 0.1 1.3 1 0 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family APH PF01636.18 gi|57640614|ref|YP_183092.1| - 1.5e-12 47.7 2.2 2e-06 27.7 0.2 2.2 1 1 1 2 2 2 2 Phosphotransferase enzyme family Pkinase_Tyr PF07714.12 gi|57640614|ref|YP_183092.1| - 1.3e-09 37.4 0.1 1.7e-09 37.1 0.1 1.2 1 0 0 1 1 1 1 Protein tyrosine kinase WaaY PF06176.6 gi|57640614|ref|YP_183092.1| - 4e-05 22.9 0.1 6.3e-05 22.2 0.1 1.3 1 0 0 1 1 1 1 Lipopolysaccharide core biosynthesis protein (WaaY) EcKinase PF02958.15 gi|57640614|ref|YP_183092.1| - 0.00074 18.7 0.0 0.0013 17.9 0.0 1.5 1 1 0 1 1 1 1 Ecdysteroid kinase Choline_kinase PF01633.15 gi|57640614|ref|YP_183092.1| - 0.027 14.0 0.0 0.051 13.1 0.0 1.5 1 1 0 1 1 1 0 Choline/ethanolamine kinase Kinase-like PF14531.1 gi|57640614|ref|YP_183092.1| - 0.079 11.9 0.0 0.1 11.5 0.0 1.3 1 0 0 1 1 1 0 Kinase-like DUF2342 PF10103.4 gi|57640614|ref|YP_183092.1| - 0.081 11.8 0.1 0.19 10.6 0.0 1.6 1 1 0 1 1 1 0 Uncharacterised conserved protein (DUF2342) DUF1679 PF07914.6 gi|57640614|ref|YP_183092.1| - 0.11 11.0 0.0 0.39 9.3 0.0 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1679) Rhomboid PF01694.17 gi|57640615|ref|YP_183093.1| - 0.0003 20.8 12.5 0.0003 20.8 8.7 2.5 1 1 1 2 2 2 1 Rhomboid family PDR_assoc PF08370.6 gi|57640615|ref|YP_183093.1| - 1.1 8.8 4.5 0.52 9.8 0.8 2.2 2 0 0 2 2 2 0 Plant PDR ABC transporter associated PRA1 PF03208.14 gi|57640615|ref|YP_183093.1| - 2.5 7.3 11.0 0.15 11.3 1.8 2.3 2 1 0 2 2 2 0 PRA1 family protein MutS_V PF00488.16 gi|57640617|ref|YP_183095.1| - 1.7e-09 37.4 0.0 2.7e-09 36.7 0.0 1.3 1 0 0 1 1 1 1 MutS domain V AAA_21 PF13304.1 gi|57640617|ref|YP_183095.1| - 1.5e-05 25.1 2.6 0.084 12.8 0.0 3.2 4 0 0 4 4 4 2 AAA domain AAA_10 PF12846.2 gi|57640617|ref|YP_183095.1| - 0.00055 19.4 1.3 0.0036 16.7 0.0 2.7 3 1 0 3 3 3 1 AAA-like domain AAA_22 PF13401.1 gi|57640617|ref|YP_183095.1| - 0.0023 18.0 0.2 0.066 13.3 0.0 3.1 2 1 0 2 2 2 1 AAA domain AAA_28 PF13521.1 gi|57640617|ref|YP_183095.1| - 0.0027 17.6 0.0 0.0065 16.4 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|57640617|ref|YP_183095.1| - 0.006 15.6 0.0 1.8 7.4 0.0 2.3 2 0 0 2 2 2 2 AAA ATPase domain AAA_14 PF13173.1 gi|57640617|ref|YP_183095.1| - 0.01 15.7 0.0 0.034 14.0 0.0 1.9 1 0 0 1 1 1 0 AAA domain AAA PF00004.24 gi|57640617|ref|YP_183095.1| - 0.019 15.1 0.0 0.055 13.6 0.0 1.8 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) CPT PF07931.7 gi|57640617|ref|YP_183095.1| - 0.027 14.0 0.0 0.085 12.4 0.0 1.9 1 1 0 1 1 1 0 Chloramphenicol phosphotransferase-like protein AAA_23 PF13476.1 gi|57640617|ref|YP_183095.1| - 0.071 13.4 5.0 0.58 10.4 0.0 2.7 2 1 0 2 2 2 0 AAA domain AAA_25 PF13481.1 gi|57640617|ref|YP_183095.1| - 0.15 11.4 0.3 2.6 7.4 0.2 2.6 1 1 0 1 1 1 0 AAA domain 2-Hacid_dh_C PF02826.14 gi|57640618|ref|YP_183096.1| - 1.1e-68 229.8 0.0 1.6e-68 229.3 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|57640618|ref|YP_183096.1| - 1.5e-39 134.5 0.0 1.7e-39 134.3 0.0 1.0 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.10 gi|57640618|ref|YP_183096.1| - 9.2e-09 35.3 0.0 2.2e-08 34.1 0.0 1.6 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.12 gi|57640618|ref|YP_183096.1| - 5.2e-07 29.9 0.0 1.1e-06 29.0 0.0 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent IlvN PF07991.7 gi|57640618|ref|YP_183096.1| - 7.2e-06 25.4 0.0 1.5e-05 24.4 0.0 1.5 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, catalytic domain AdoHcyase_NAD PF00670.16 gi|57640618|ref|YP_183096.1| - 1.6e-05 24.8 0.0 0.00018 21.4 0.0 2.3 2 1 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain PDH PF02153.12 gi|57640618|ref|YP_183096.1| - 0.00012 21.0 0.0 0.0002 20.3 0.0 1.4 1 0 0 1 1 1 1 Prephenate dehydrogenase NAD_binding_7 PF13241.1 gi|57640618|ref|YP_183096.1| - 0.00046 20.4 0.0 0.0018 18.4 0.0 1.9 2 0 0 2 2 2 1 Putative NAD(P)-binding XdhC_C PF13478.1 gi|57640618|ref|YP_183096.1| - 0.013 15.8 0.0 0.05 13.9 0.0 1.9 2 0 0 2 2 2 0 XdhC Rossmann domain GFO_IDH_MocA PF01408.17 gi|57640618|ref|YP_183096.1| - 0.025 15.0 0.0 0.074 13.5 0.0 1.8 2 0 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold Gp_dh_N PF00044.19 gi|57640618|ref|YP_183096.1| - 0.063 13.2 0.0 0.1 12.5 0.0 1.4 1 0 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NAD_binding_10 PF13460.1 gi|57640618|ref|YP_183096.1| - 0.072 13.0 0.0 0.14 12.1 0.0 1.7 1 0 0 1 1 1 0 NADH(P)-binding ELFV_dehydrog PF00208.16 gi|57640618|ref|YP_183096.1| - 0.15 11.5 0.0 0.23 11.0 0.0 1.2 1 0 0 1 1 1 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Trp_Tyr_perm PF03222.8 gi|57640619|ref|YP_183097.1| - 3.7e-28 98.4 32.4 2.9e-27 95.5 22.5 1.9 1 1 0 1 1 1 1 Tryptophan/tyrosine permease family Aa_trans PF01490.13 gi|57640619|ref|YP_183097.1| - 1.8e-21 76.0 27.9 3.3e-20 71.9 19.3 2.1 1 1 0 1 1 1 1 Transmembrane amino acid transporter protein Spore_permease PF03845.8 gi|57640619|ref|YP_183097.1| - 1.2e-06 27.4 17.4 1.2e-06 27.4 12.1 1.9 2 1 0 2 2 2 1 Spore germination protein COX2-transmemb PF09125.5 gi|57640619|ref|YP_183097.1| - 0.0043 16.5 4.9 0.022 14.2 0.3 3.0 2 0 0 2 2 2 1 Cytochrome C oxidase subunit II, transmembrane SIR2 PF02146.12 gi|57640620|ref|YP_183098.1| - 1.2e-61 207.5 0.0 1.4e-61 207.3 0.0 1.1 1 0 0 1 1 1 1 Sir2 family TPP_enzyme_M PF00205.17 gi|57640620|ref|YP_183098.1| - 0.004 16.9 0.0 0.032 13.9 0.0 2.1 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, central domain HypA PF01155.14 gi|57640620|ref|YP_183098.1| - 0.03 14.0 0.3 0.35 10.5 0.1 2.3 2 0 0 2 2 2 0 Hydrogenase expression/synthesis hypA family zf-ribbon_3 PF13248.1 gi|57640620|ref|YP_183098.1| - 0.05 12.8 0.5 0.12 11.5 0.4 1.6 1 1 0 1 1 1 0 zinc-ribbon domain COX5B PF01215.14 gi|57640620|ref|YP_183098.1| - 0.12 12.0 0.0 0.19 11.3 0.0 1.3 1 0 0 1 1 1 0 Cytochrome c oxidase subunit Vb DNA_ligase_OB PF03120.11 gi|57640620|ref|YP_183098.1| - 0.12 12.0 1.6 0.56 9.9 1.1 2.1 1 1 0 1 1 1 0 NAD-dependent DNA ligase OB-fold domain RNA_POL_M_15KD PF02150.11 gi|57640620|ref|YP_183098.1| - 0.14 11.8 1.5 1.6 8.4 0.1 2.2 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit PhnA_Zn_Ribbon PF08274.7 gi|57640620|ref|YP_183098.1| - 6.3 6.6 6.7 0.45 10.3 1.3 1.5 2 0 0 2 2 2 0 PhnA Zinc-Ribbon HAD_2 PF13419.1 gi|57640621|ref|YP_183099.1| - 3.4e-31 108.8 0.2 5.2e-31 108.2 0.1 1.3 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|57640621|ref|YP_183099.1| - 2e-17 64.3 0.1 1.2e-15 58.5 0.0 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|57640621|ref|YP_183099.1| - 5.6e-17 61.2 0.0 1e-16 60.4 0.0 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.2 gi|57640621|ref|YP_183099.1| - 1e-05 25.7 0.0 1.7e-05 25.0 0.0 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase PGP_phosphatase PF09419.5 gi|57640621|ref|YP_183099.1| - 0.0001 21.7 0.0 0.0025 17.2 0.0 2.2 2 0 0 2 2 2 1 Mitochondrial PGP phosphatase NIF PF03031.13 gi|57640621|ref|YP_183099.1| - 0.0029 17.2 0.6 0.45 10.1 0.0 2.2 2 0 0 2 2 2 2 NLI interacting factor-like phosphatase ASCH PF04266.9 gi|57640622|ref|YP_183100.1| - 1.9e-21 76.4 0.2 2.9e-21 75.8 0.1 1.2 1 0 0 1 1 1 1 ASCH domain GTP_EFTU_D2 PF03144.20 gi|57640622|ref|YP_183100.1| - 0.068 13.2 0.4 1.7 8.8 0.1 2.5 3 0 0 3 3 3 0 Elongation factor Tu domain 2 PAP2 PF01569.16 gi|57640623|ref|YP_183101.1| - 1.6e-20 73.0 2.6 1.6e-20 73.0 1.8 2.1 2 1 0 2 2 2 1 PAP2 superfamily PAP2_C PF14360.1 gi|57640623|ref|YP_183101.1| - 0.099 12.9 0.3 0.099 12.9 0.2 2.3 3 0 0 3 3 3 0 PAP2 superfamily C-terminal O-antigen_lig PF13425.1 gi|57640623|ref|YP_183101.1| - 0.48 10.4 7.0 0.13 12.2 1.5 2.2 1 1 1 2 2 2 0 O-antigen ligase like membrane protein Sm_multidrug_ex PF06695.6 gi|57640624|ref|YP_183102.1| - 6.8e-37 126.3 2.9 8.2e-37 126.0 2.0 1.1 1 0 0 1 1 1 1 Putative small multi-drug export protein Molybdopterin PF00384.17 gi|57640625|ref|YP_183103.1| - 6.5e-47 160.2 0.0 2.7e-46 158.2 0.0 1.8 1 1 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|57640625|ref|YP_183103.1| - 6.4e-23 80.6 0.0 1.4e-22 79.5 0.0 1.6 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.11 gi|57640625|ref|YP_183103.1| - 2.1e-06 27.4 0.0 3.9e-06 26.5 0.0 1.4 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain DUF835 PF05763.7 gi|57640626|ref|YP_183104.1| - 9e-42 141.8 0.0 1.3e-41 141.3 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF835) DUF872 PF05915.7 gi|57640626|ref|YP_183104.1| - 0.11 12.3 0.6 0.32 10.8 0.4 1.8 1 0 0 1 1 1 0 Eukaryotic protein of unknown function (DUF872) ABC2_membrane_3 PF12698.2 gi|57640627|ref|YP_183105.1| - 1.5e-10 40.6 18.5 2.1e-10 40.1 12.8 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|57640627|ref|YP_183105.1| - 1.3e-07 31.0 17.2 2.3e-07 30.2 11.9 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|57640627|ref|YP_183105.1| - 0.4 9.5 17.8 0.11 11.3 8.1 2.4 1 1 1 2 2 2 0 ABC-2 family transporter protein MerC PF03203.9 gi|57640627|ref|YP_183105.1| - 0.4 11.0 3.6 0.65 10.3 0.1 2.3 1 1 1 2 2 2 0 MerC mercury resistance protein ABC2_membrane_3 PF12698.2 gi|57640628|ref|YP_183106.1| - 5.5e-11 42.0 14.4 5.5e-11 42.0 10.0 1.9 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|57640628|ref|YP_183106.1| - 4.5e-05 22.7 13.6 4.5e-05 22.7 9.4 1.9 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_5 PF13346.1 gi|57640628|ref|YP_183106.1| - 0.063 12.5 17.2 0.12 11.6 11.9 1.7 1 1 0 1 1 1 0 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|57640628|ref|YP_183106.1| - 0.26 10.1 15.6 0.58 8.9 10.8 1.8 1 1 0 1 1 1 0 ABC-2 family transporter protein DUF378 PF04070.7 gi|57640628|ref|YP_183106.1| - 1.5 8.5 9.6 1.5 8.4 3.0 2.7 2 0 0 2 2 2 0 Domain of unknown function (DUF378) DUF308 PF03729.8 gi|57640628|ref|YP_183106.1| - 3.3 7.7 18.0 0.041 13.8 3.5 3.3 3 1 1 4 4 4 0 Short repeat of unknown function (DUF308) ABC_tran PF00005.22 gi|57640629|ref|YP_183107.1| - 1e-27 97.1 0.0 1.6e-27 96.4 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|57640629|ref|YP_183107.1| - 2.6e-15 57.1 0.2 1.9e-11 44.4 0.1 2.2 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|57640629|ref|YP_183107.1| - 4.5e-05 23.8 0.2 0.00015 22.1 0.0 1.8 2 1 0 2 2 2 1 AAA domain AAA PF00004.24 gi|57640629|ref|YP_183107.1| - 0.0015 18.7 0.1 0.0071 16.5 0.0 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DUF4162 PF13732.1 gi|57640629|ref|YP_183107.1| - 0.0015 18.9 0.1 0.0039 17.6 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) MobB PF03205.9 gi|57640629|ref|YP_183107.1| - 0.019 14.6 0.0 0.078 12.6 0.0 2.0 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_16 PF13191.1 gi|57640629|ref|YP_183107.1| - 0.024 14.6 0.0 0.17 11.8 0.0 2.1 1 1 0 1 1 1 0 AAA ATPase domain SRP54 PF00448.17 gi|57640629|ref|YP_183107.1| - 0.065 12.6 0.1 0.13 11.7 0.1 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain DUF258 PF03193.11 gi|57640629|ref|YP_183107.1| - 0.087 12.0 0.0 0.21 10.7 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function, DUF258 AAA_29 PF13555.1 gi|57640629|ref|YP_183107.1| - 0.094 12.2 0.0 0.21 11.1 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|57640629|ref|YP_183107.1| - 0.12 11.3 0.0 7.1 5.5 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain Rad17 PF03215.10 gi|57640629|ref|YP_183107.1| - 0.14 10.8 0.0 0.16 10.6 0.0 1.2 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein RHH_1 PF01402.16 gi|57640630|ref|YP_183108.1| - 1.2e-06 28.1 0.1 6.6e-06 25.8 0.0 2.2 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family DUF3437 PF11919.3 gi|57640630|ref|YP_183108.1| - 0.13 12.0 0.2 0.16 11.7 0.1 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF3437) PIN_3 PF13470.1 gi|57640631|ref|YP_183109.1| - 4.8e-16 59.4 0.0 6.3e-16 59.1 0.0 1.2 1 0 0 1 1 1 1 PIN domain PIN PF01850.16 gi|57640631|ref|YP_183109.1| - 0.015 15.6 0.1 0.062 13.6 0.1 2.0 1 1 0 1 1 1 0 PIN domain PIN_2 PF10130.4 gi|57640631|ref|YP_183109.1| - 0.055 13.5 0.0 0.079 13.0 0.0 1.5 1 1 0 1 1 1 0 PIN domain HTH_10 PF04967.7 gi|57640632|ref|YP_183110.1| - 1.2e-20 72.8 0.0 1.8e-20 72.2 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain HTH_24 PF13412.1 gi|57640632|ref|YP_183110.1| - 5.8e-05 22.4 0.0 0.00013 21.3 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Sigma70_r4 PF04545.11 gi|57640632|ref|YP_183110.1| - 0.00042 19.5 0.0 0.00077 18.7 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4_2 PF08281.7 gi|57640632|ref|YP_183110.1| - 0.00056 19.3 0.0 0.0012 18.3 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_5 PF01022.15 gi|57640632|ref|YP_183110.1| - 0.00083 18.9 0.0 0.0016 18.0 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family DUF354 PF04007.7 gi|57640632|ref|YP_183110.1| - 0.0016 17.3 0.0 0.059 12.2 0.0 2.2 1 1 1 2 2 2 1 Protein of unknown function (DUF354) HTH_AsnC-type PF13404.1 gi|57640632|ref|YP_183110.1| - 0.006 16.1 0.0 0.017 14.6 0.0 1.7 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain MarR_2 PF12802.2 gi|57640632|ref|YP_183110.1| - 0.011 15.3 0.0 0.022 14.4 0.0 1.5 1 0 0 1 1 1 0 MarR family HTH_IclR PF09339.5 gi|57640632|ref|YP_183110.1| - 0.016 14.8 0.0 0.037 13.6 0.0 1.6 1 0 0 1 1 1 0 IclR helix-turn-helix domain Fe_dep_repress PF01325.14 gi|57640632|ref|YP_183110.1| - 0.022 14.6 0.0 0.057 13.3 0.0 1.8 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_17 PF12728.2 gi|57640632|ref|YP_183110.1| - 0.042 14.1 0.0 0.1 12.8 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|57640632|ref|YP_183110.1| - 0.063 13.0 0.0 0.17 11.6 0.0 1.7 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_AraC PF00165.18 gi|57640632|ref|YP_183110.1| - 0.082 12.7 0.0 0.4 10.5 0.0 2.0 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix proteins, AraC family HTH_23 PF13384.1 gi|57640632|ref|YP_183110.1| - 0.098 12.3 0.0 0.17 11.5 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain LexA_DNA_bind PF01726.11 gi|57640632|ref|YP_183110.1| - 0.13 11.8 0.2 0.37 10.3 0.2 1.9 1 1 0 1 1 1 0 LexA DNA binding domain HTH_27 PF13463.1 gi|57640632|ref|YP_183110.1| - 0.14 12.5 0.0 0.47 10.8 0.0 1.9 2 1 0 2 2 2 0 Winged helix DNA-binding domain PmbA_TldD PF01523.11 gi|57640633|ref|YP_183111.1| - 3.6e-57 193.8 0.6 4.5e-57 193.5 0.4 1.1 1 0 0 1 1 1 1 Putative modulator of DNA gyrase PmbA_TldD PF01523.11 gi|57640634|ref|YP_183112.1| - 2.2e-71 240.5 0.1 2.9e-71 240.1 0.1 1.2 1 0 0 1 1 1 1 Putative modulator of DNA gyrase MazG PF03819.12 gi|57640635|ref|YP_183113.1| - 1.1e-17 63.6 0.0 1.4e-17 63.4 0.0 1.1 1 0 0 1 1 1 1 MazG nucleotide pyrophosphohydrolase domain PRA-PH PF01503.12 gi|57640635|ref|YP_183113.1| - 0.0006 20.0 0.1 0.00075 19.7 0.1 1.1 1 0 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase MazG-like PF12643.2 gi|57640635|ref|YP_183113.1| - 0.0092 15.8 0.0 0.012 15.5 0.0 1.1 1 0 0 1 1 1 1 MazG-like family ProRS-C_1 PF09180.6 gi|57640635|ref|YP_183113.1| - 0.052 13.4 0.2 0.071 13.0 0.2 1.3 1 0 0 1 1 1 0 Prolyl-tRNA synthetase, C-terminal CbiA PF01656.18 gi|57640636|ref|YP_183114.1| - 1.8e-31 109.0 0.0 2.2e-31 108.7 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Fer4_21 PF14697.1 gi|57640636|ref|YP_183114.1| - 2.5e-11 43.2 11.8 2.6e-11 43.2 7.4 1.6 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|57640636|ref|YP_183114.1| - 1.9e-09 36.7 18.8 1.2e-06 27.8 4.3 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|57640636|ref|YP_183114.1| - 1.7e-07 31.5 13.9 3.8e-07 30.3 9.6 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|57640636|ref|YP_183114.1| - 5.6e-06 26.5 3.0 0.0025 18.1 0.7 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|57640636|ref|YP_183114.1| - 1.4e-05 24.7 13.8 0.0057 16.4 1.9 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|57640636|ref|YP_183114.1| - 1.5e-05 25.6 7.4 0.011 16.4 1.1 2.5 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_10 PF13237.1 gi|57640636|ref|YP_183114.1| - 1.9e-05 24.3 12.6 0.00023 20.9 9.7 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_NifH PF00142.13 gi|57640636|ref|YP_183114.1| - 5.6e-05 22.4 0.0 0.23 10.6 0.0 2.4 2 1 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family Fer4_9 PF13187.1 gi|57640636|ref|YP_183114.1| - 0.00011 22.3 14.8 0.00025 21.2 10.2 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|57640636|ref|YP_183114.1| - 0.00046 20.1 9.7 0.085 12.9 3.1 2.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|57640636|ref|YP_183114.1| - 0.00048 20.5 8.7 0.015 15.7 0.5 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain AAA_26 PF13500.1 gi|57640636|ref|YP_183114.1| - 0.00049 19.7 0.2 0.074 12.6 0.0 2.8 2 1 1 3 3 3 1 AAA domain Fer4_6 PF12837.2 gi|57640636|ref|YP_183114.1| - 0.00076 19.2 5.9 0.00076 19.2 4.1 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain ArsA_ATPase PF02374.10 gi|57640636|ref|YP_183114.1| - 0.0012 17.9 0.0 0.0031 16.6 0.0 1.7 2 0 0 2 2 2 1 Anion-transporting ATPase GTP_EFTU PF00009.22 gi|57640636|ref|YP_183114.1| - 0.023 14.1 0.0 2.5 7.4 0.0 2.1 2 0 0 2 2 2 0 Elongation factor Tu GTP binding domain AAA_25 PF13481.1 gi|57640636|ref|YP_183114.1| - 0.029 13.7 0.0 0.59 9.5 0.0 2.5 3 0 0 3 3 3 0 AAA domain Fer4_11 PF13247.1 gi|57640636|ref|YP_183114.1| - 0.035 13.9 3.9 0.077 12.8 2.7 1.6 1 0 0 1 1 1 0 4Fe-4S dicluster domain YhjQ PF06564.7 gi|57640636|ref|YP_183114.1| - 0.045 13.1 0.1 7.9 5.7 0.0 2.2 2 0 0 2 2 2 0 YhjQ protein Fer4_4 PF12800.2 gi|57640636|ref|YP_183114.1| - 0.059 13.7 11.9 0.73 10.3 2.6 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Miro PF08477.8 gi|57640636|ref|YP_183114.1| - 0.08 13.4 0.0 22 5.5 0.0 2.7 2 0 0 2 2 2 0 Miro-like protein Fer4_15 PF13459.1 gi|57640636|ref|YP_183114.1| - 0.094 13.2 12.9 1 9.9 1.4 2.7 1 1 1 2 2 2 0 4Fe-4S single cluster domain ParA PF10609.4 gi|57640636|ref|YP_183114.1| - 0.14 12.0 0.0 0.33 10.8 0.0 1.6 1 0 0 1 1 1 0 ParA/MinD ATPase like Fer4_13 PF13370.1 gi|57640636|ref|YP_183114.1| - 0.39 11.1 14.1 0.79 10.1 2.8 2.5 1 1 1 2 2 2 0 4Fe-4S single cluster domain Baculo_RING PF05883.6 gi|57640636|ref|YP_183114.1| - 1.5 8.6 6.4 0.32 10.8 2.1 1.6 2 0 0 2 2 1 0 Baculovirus U-box/Ring-like domain Fer4_3 PF12798.2 gi|57640636|ref|YP_183114.1| - 4.4 8.0 23.5 4.6 8.0 5.8 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain CbiA PF01656.18 gi|57640637|ref|YP_183115.1| - 2e-28 99.1 0.0 2.7e-28 98.7 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Fer4_6 PF12837.2 gi|57640637|ref|YP_183115.1| - 2.1e-10 40.0 12.5 5.2e-06 26.1 1.7 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.22 gi|57640637|ref|YP_183115.1| - 7.8e-10 37.9 12.6 7.8e-06 25.2 1.2 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|57640637|ref|YP_183115.1| - 1e-08 34.8 7.8 1.6e-08 34.2 5.4 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|57640637|ref|YP_183115.1| - 7.2e-08 32.6 9.7 1.3e-07 31.8 6.7 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_NifH PF00142.13 gi|57640637|ref|YP_183115.1| - 3.9e-07 29.5 0.0 0.0045 16.2 0.0 2.2 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family Fer4_2 PF12797.2 gi|57640637|ref|YP_183115.1| - 7.4e-07 28.7 13.0 0.00073 19.3 1.4 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|57640637|ref|YP_183115.1| - 5.7e-06 26.5 11.9 1.6e-05 25.0 8.4 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|57640637|ref|YP_183115.1| - 9.5e-06 25.3 11.0 2.5e-05 23.9 7.7 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain MipZ PF09140.6 gi|57640637|ref|YP_183115.1| - 1.1e-05 24.7 0.1 1.7e-05 24.0 0.0 1.3 1 0 0 1 1 1 1 ATPase MipZ Fer4_17 PF13534.1 gi|57640637|ref|YP_183115.1| - 1.7e-05 25.1 4.1 0.043 14.1 0.4 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|57640637|ref|YP_183115.1| - 5.8e-05 23.7 9.5 0.012 16.3 2.3 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|57640637|ref|YP_183115.1| - 7.5e-05 22.7 13.8 0.0083 16.3 1.4 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|57640637|ref|YP_183115.1| - 0.00035 20.5 12.9 0.0072 16.3 9.7 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|57640637|ref|YP_183115.1| - 0.00056 20.2 6.2 0.18 12.2 0.1 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain AAA_19 PF13245.1 gi|57640637|ref|YP_183115.1| - 0.0015 18.2 1.8 0.8 9.4 0.2 2.5 2 0 0 2 2 2 2 Part of AAA domain AAA_31 PF13614.1 gi|57640637|ref|YP_183115.1| - 0.0022 17.9 0.0 0.0034 17.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain ArsA_ATPase PF02374.10 gi|57640637|ref|YP_183115.1| - 0.0093 15.0 0.5 0.018 14.0 0.3 1.5 1 0 0 1 1 1 1 Anion-transporting ATPase AAA_25 PF13481.1 gi|57640637|ref|YP_183115.1| - 0.017 14.5 0.0 0.044 13.1 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_17 PF13207.1 gi|57640637|ref|YP_183115.1| - 0.026 15.3 0.0 0.2 12.4 0.0 2.1 2 0 0 2 2 2 0 AAA domain Fer4_11 PF13247.1 gi|57640637|ref|YP_183115.1| - 0.031 14.1 4.5 0.056 13.3 3.1 1.3 1 0 0 1 1 1 0 4Fe-4S dicluster domain ArgK PF03308.11 gi|57640637|ref|YP_183115.1| - 0.1 11.3 1.3 0.31 9.7 0.2 1.9 2 0 0 2 2 2 0 ArgK protein YhjQ PF06564.7 gi|57640637|ref|YP_183115.1| - 0.15 11.4 0.3 0.25 10.6 0.2 1.2 1 0 0 1 1 1 0 YhjQ protein Fer4_3 PF12798.2 gi|57640637|ref|YP_183115.1| - 0.45 11.1 19.6 0.53 10.9 5.0 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain ParA PF10609.4 gi|57640637|ref|YP_183115.1| - 0.56 10.1 0.0 0.56 10.1 0.0 2.0 2 0 0 2 2 2 0 ParA/MinD ATPase like Radical_SAM PF04055.16 gi|57640638|ref|YP_183116.1| - 5.3e-14 52.7 0.2 1.2e-13 51.5 0.1 1.6 1 0 0 1 1 1 1 Radical SAM superfamily DUF835 PF05763.7 gi|57640638|ref|YP_183116.1| - 0.022 14.2 0.1 0.065 12.7 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF835) Methyltransf_11 PF08241.7 gi|57640639|ref|YP_183117.1| - 6.3e-20 71.4 0.0 1e-19 70.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|57640639|ref|YP_183117.1| - 6e-14 52.0 0.0 8.6e-14 51.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|57640639|ref|YP_183117.1| - 2.3e-11 43.2 0.0 7.6e-11 41.5 0.0 1.7 1 1 1 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.7 gi|57640639|ref|YP_183117.1| - 3.2e-09 37.1 0.0 5.6e-09 36.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|57640639|ref|YP_183117.1| - 1.2e-08 34.7 0.0 1.6e-08 34.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|57640639|ref|YP_183117.1| - 7.3e-08 32.9 0.0 1.6e-07 31.9 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.7 gi|57640639|ref|YP_183117.1| - 1.1e-05 24.8 0.0 1.8e-05 24.2 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_8 PF05148.10 gi|57640639|ref|YP_183117.1| - 1.4e-05 24.8 0.0 7.4e-05 22.4 0.0 1.9 1 1 1 2 2 2 1 Hypothetical methyltransferase Methyltransf_25 PF13649.1 gi|57640639|ref|YP_183117.1| - 4.1e-05 23.8 0.0 8.5e-05 22.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain N6_N4_Mtase PF01555.13 gi|57640639|ref|YP_183117.1| - 0.027 13.9 0.0 0.045 13.2 0.0 1.3 1 0 0 1 1 1 0 DNA methylase Bin3 PF06859.7 gi|57640639|ref|YP_183117.1| - 0.1 12.6 0.0 2.9 7.9 0.0 2.3 1 1 1 2 2 2 0 Bicoid-interacting protein 3 (Bin3) Methyltransf_26 PF13659.1 gi|57640639|ref|YP_183117.1| - 0.15 12.1 0.0 0.37 10.8 0.0 1.6 1 1 0 1 1 1 0 Methyltransferase domain Aldedh PF00171.17 gi|57640640|ref|YP_183118.1| - 2.7e-125 418.3 0.0 3.1e-125 418.1 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.9 gi|57640640|ref|YP_183118.1| - 9.2e-06 24.6 0.0 4.6e-05 22.3 0.0 1.9 1 1 0 1 1 1 1 Acyl-CoA reductase (LuxC) Peripla_BP_2 PF01497.13 gi|57640641|ref|YP_183119.1| - 1.9e-41 141.7 0.0 2.7e-41 141.2 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein Oxidored_molyb PF00174.14 gi|57640641|ref|YP_183119.1| - 1.4e-09 37.6 0.0 2.7e-09 36.6 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain Metallophos_3 PF14582.1 gi|57640641|ref|YP_183119.1| - 0.012 14.7 0.1 1.9 7.5 0.1 2.3 1 1 1 2 2 2 0 Metallophosphoesterase, calcineurin superfamily Abhydro_lipase PF04083.11 gi|57640641|ref|YP_183119.1| - 0.13 11.6 0.0 1.1 8.6 0.0 2.1 2 0 0 2 2 2 0 Partial alpha/beta-hydrolase lipase region FecCD PF01032.13 gi|57640642|ref|YP_183120.1| - 3.3e-83 279.0 32.0 3.9e-83 278.8 22.2 1.0 1 0 0 1 1 1 1 FecCD transport family ABC-3 PF00950.12 gi|57640642|ref|YP_183120.1| - 4.9e-09 35.8 15.7 9.5e-09 34.9 10.9 1.5 1 1 0 1 1 1 1 ABC 3 transport family ABC_tran PF00005.22 gi|57640643|ref|YP_183121.1| - 6.1e-27 94.5 0.0 8.2e-27 94.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|57640643|ref|YP_183121.1| - 8.9e-16 58.6 0.7 1.9e-07 31.3 0.0 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|57640643|ref|YP_183121.1| - 4.5e-12 45.6 0.0 1.7e-06 27.4 0.0 2.1 1 1 1 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|57640643|ref|YP_183121.1| - 2.4e-08 34.5 0.0 2.5e-08 34.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|57640643|ref|YP_183121.1| - 7.2e-06 25.4 0.1 1.9e-05 24.1 0.0 1.6 2 0 0 2 2 1 1 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|57640643|ref|YP_183121.1| - 1e-05 24.8 0.0 0.036 13.1 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain DUF258 PF03193.11 gi|57640643|ref|YP_183121.1| - 0.00089 18.4 0.0 0.0013 17.9 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_22 PF13401.1 gi|57640643|ref|YP_183121.1| - 0.0066 16.5 0.1 0.055 13.6 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|57640643|ref|YP_183121.1| - 0.0071 16.3 0.2 0.011 15.7 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_5 PF07728.9 gi|57640643|ref|YP_183121.1| - 0.014 15.1 0.0 0.03 14.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_19 PF13245.1 gi|57640643|ref|YP_183121.1| - 0.016 14.9 0.0 0.038 13.7 0.0 1.6 1 0 0 1 1 1 0 Part of AAA domain AAA_25 PF13481.1 gi|57640643|ref|YP_183121.1| - 0.021 14.2 0.0 0.033 13.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|57640643|ref|YP_183121.1| - 0.023 14.1 0.7 0.066 12.6 0.2 1.8 1 1 1 2 2 2 0 AAA-like domain AAA PF00004.24 gi|57640643|ref|YP_183121.1| - 0.025 14.7 0.0 0.057 13.6 0.0 1.6 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) SbcCD_C PF13558.1 gi|57640643|ref|YP_183121.1| - 0.033 14.1 0.1 0.57 10.1 0.1 2.4 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit Rsa3 PF14615.1 gi|57640643|ref|YP_183121.1| - 0.04 13.2 0.0 0.079 12.2 0.0 1.5 1 0 0 1 1 1 0 Ribosome-assembly protein 3 ABC_ATPase PF09818.4 gi|57640643|ref|YP_183121.1| - 0.088 11.3 0.1 0.74 8.3 0.1 1.9 2 0 0 2 2 2 0 Predicted ATPase of the ABC class AAA_33 PF13671.1 gi|57640643|ref|YP_183121.1| - 0.11 12.3 0.0 0.27 11.0 0.0 1.6 2 0 0 2 2 2 0 AAA domain NACHT PF05729.7 gi|57640643|ref|YP_183121.1| - 0.16 11.6 0.5 0.35 10.4 0.1 1.6 2 0 0 2 2 2 0 NACHT domain AAA_30 PF13604.1 gi|57640643|ref|YP_183121.1| - 0.18 11.3 0.0 0.43 10.1 0.0 1.6 2 0 0 2 2 2 0 AAA domain Oxidored_molyb PF00174.14 gi|57640644|ref|YP_183122.1| - 0.054 12.9 0.3 3.2 7.1 0.0 3.0 3 1 0 3 3 3 0 Oxidoreductase molybdopterin binding domain DUF364 PF04016.7 gi|57640645|ref|YP_183123.1| - 7.8e-39 132.3 0.2 1.1e-38 131.8 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF364) DUF4213 PF13938.1 gi|57640645|ref|YP_183123.1| - 3.2e-17 62.4 0.0 5.8e-17 61.6 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4213) UPF0066 PF01980.11 gi|57640646|ref|YP_183124.1| - 1.7e-41 140.9 0.0 2.1e-41 140.6 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0066 Lactamase_B PF00753.22 gi|57640647|ref|YP_183125.1| - 1.1e-09 38.1 0.1 1.6e-09 37.7 0.1 1.3 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|57640647|ref|YP_183125.1| - 1.3e-07 31.4 0.0 1.5e-07 31.1 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain DUF3185 PF11381.3 gi|57640648|ref|YP_183126.1| - 9.8 6.0 8.9 13 5.6 0.7 2.9 2 1 0 2 2 2 0 Protein of unknown function (DUF3185) FeoB_N PF02421.13 gi|57640649|ref|YP_183127.1| - 8.8e-71 236.2 0.2 1.3e-70 235.6 0.1 1.3 1 0 0 1 1 1 1 Ferrous iron transport protein B Gate PF07670.9 gi|57640649|ref|YP_183127.1| - 5.8e-51 170.9 14.4 2.1e-34 117.6 2.2 2.9 3 0 0 3 3 3 2 Nucleoside recognition FeoB_C PF07664.7 gi|57640649|ref|YP_183127.1| - 4.5e-20 70.8 1.6 4.5e-20 70.8 1.1 3.3 4 0 0 4 4 3 1 Ferrous iron transport protein B C terminus MMR_HSR1 PF01926.18 gi|57640649|ref|YP_183127.1| - 3.4e-16 59.2 0.1 6.6e-16 58.3 0.0 1.4 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU PF00009.22 gi|57640649|ref|YP_183127.1| - 2.2e-08 33.7 0.1 1.4e-06 27.9 0.1 2.6 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain SRPRB PF09439.5 gi|57640649|ref|YP_183127.1| - 0.00015 21.0 0.0 0.00025 20.3 0.0 1.4 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit Arf PF00025.16 gi|57640649|ref|YP_183127.1| - 0.00035 19.8 0.1 0.00069 18.9 0.1 1.5 1 1 0 1 1 1 1 ADP-ribosylation factor family ATP_bind_1 PF03029.12 gi|57640649|ref|YP_183127.1| - 0.00037 20.0 0.0 0.0027 17.3 0.0 2.0 1 1 0 1 1 1 1 Conserved hypothetical ATP binding protein UPF0150 PF03681.10 gi|57640649|ref|YP_183127.1| - 0.0052 16.3 0.2 0.028 14.0 0.0 2.3 2 0 0 2 2 2 1 Uncharacterised protein family (UPF0150) AAA_17 PF13207.1 gi|57640649|ref|YP_183127.1| - 0.02 15.7 2.4 0.72 10.6 0.0 2.9 2 1 0 2 2 2 0 AAA domain PduV-EutP PF10662.4 gi|57640649|ref|YP_183127.1| - 0.035 13.5 0.1 0.12 11.8 0.0 1.8 1 1 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation ABC_tran PF00005.22 gi|57640649|ref|YP_183127.1| - 0.04 14.2 0.0 0.082 13.2 0.0 1.4 1 0 0 1 1 1 0 ABC transporter Miro PF08477.8 gi|57640649|ref|YP_183127.1| - 0.046 14.2 0.0 0.091 13.2 0.0 1.5 1 0 0 1 1 1 0 Miro-like protein AAA_21 PF13304.1 gi|57640649|ref|YP_183127.1| - 0.048 13.6 0.5 0.12 12.2 0.0 1.9 2 1 1 3 3 3 0 AAA domain ArgK PF03308.11 gi|57640649|ref|YP_183127.1| - 0.075 11.7 0.2 3.9 6.1 0.0 2.3 2 0 0 2 2 2 0 ArgK protein Dynamin_N PF00350.18 gi|57640649|ref|YP_183127.1| - 0.12 12.1 0.0 0.51 10.1 0.0 1.9 2 0 0 2 2 2 0 Dynamin family AAA_28 PF13521.1 gi|57640649|ref|YP_183127.1| - 0.17 11.8 0.0 0.33 10.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain cobW PF02492.14 gi|57640649|ref|YP_183127.1| - 0.21 11.0 0.9 9.8 5.5 0.0 2.5 3 0 0 3 3 3 0 CobW/HypB/UreG, nucleotide-binding domain FeoA PF04023.9 gi|57640650|ref|YP_183128.1| - 1.5e-20 72.8 3.6 1.7e-20 72.7 2.5 1.0 1 0 0 1 1 1 1 FeoA domain FeoA PF04023.9 gi|57640651|ref|YP_183129.1| - 1e-19 70.2 0.8 1.1e-19 70.0 0.5 1.0 1 0 0 1 1 1 1 FeoA domain SBP_bac_11 PF13531.1 gi|57640652|ref|YP_183130.1| - 3e-45 154.6 0.0 3.5e-45 154.4 0.0 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein Phosphonate-bd PF12974.2 gi|57640652|ref|YP_183130.1| - 1.9e-08 33.9 0.0 2.4e-08 33.6 0.0 1.1 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein PBP_like PF12727.2 gi|57640652|ref|YP_183130.1| - 2.2e-06 26.7 0.1 4.7e-06 25.6 0.0 1.5 2 0 0 2 2 2 1 PBP superfamily domain SBP_bac_1 PF01547.20 gi|57640652|ref|YP_183130.1| - 7.1e-05 22.6 0.1 0.00056 19.7 0.0 2.0 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein OpuAC PF04069.7 gi|57640652|ref|YP_183130.1| - 0.00038 19.8 0.0 0.00051 19.4 0.0 1.2 1 0 0 1 1 1 1 Substrate binding domain of ABC-type glycine betaine transport system BPD_transp_1 PF00528.17 gi|57640653|ref|YP_183131.1| - 1.4e-23 83.3 13.8 1.4e-23 83.3 9.6 2.0 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.22 gi|57640654|ref|YP_183132.1| - 2.5e-32 112.0 0.0 4e-32 111.3 0.0 1.3 1 0 0 1 1 1 1 ABC transporter TOBE PF03459.12 gi|57640654|ref|YP_183132.1| - 1.5e-10 41.0 0.1 4.1e-09 36.4 0.0 2.7 2 1 0 2 2 2 1 TOBE domain AAA_21 PF13304.1 gi|57640654|ref|YP_183132.1| - 6.7e-09 36.1 0.0 0.0034 17.3 0.0 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|57640654|ref|YP_183132.1| - 3.1e-05 23.3 0.0 0.1 11.8 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain SbcCD_C PF13558.1 gi|57640654|ref|YP_183132.1| - 4e-05 23.4 0.0 0.00036 20.3 0.0 2.1 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit TOBE_2 PF08402.5 gi|57640654|ref|YP_183132.1| - 0.00014 21.7 0.0 0.0003 20.7 0.0 1.6 1 0 0 1 1 1 1 TOBE domain AAA_29 PF13555.1 gi|57640654|ref|YP_183132.1| - 0.00034 20.0 0.0 0.00072 19.0 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|57640654|ref|YP_183132.1| - 0.0026 18.1 0.0 0.0034 17.7 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|57640654|ref|YP_183132.1| - 0.0041 16.6 0.0 0.21 10.9 0.0 2.1 2 0 0 2 2 2 1 AAA-like domain AAA_22 PF13401.1 gi|57640654|ref|YP_183132.1| - 0.0085 16.2 0.2 0.091 12.9 0.1 2.3 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|57640654|ref|YP_183132.1| - 0.015 14.3 0.0 1.7 7.6 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain ABC_ATPase PF09818.4 gi|57640654|ref|YP_183132.1| - 0.032 12.8 0.2 1.4 7.4 0.0 2.5 2 1 0 2 2 2 0 Predicted ATPase of the ABC class T2SE PF00437.15 gi|57640654|ref|YP_183132.1| - 0.033 13.0 0.0 0.062 12.1 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_16 PF13191.1 gi|57640654|ref|YP_183132.1| - 0.035 14.1 0.1 0.1 12.5 0.1 1.9 1 1 0 1 1 1 0 AAA ATPase domain Mg_chelatase PF01078.16 gi|57640654|ref|YP_183132.1| - 0.048 12.8 0.0 0.085 12.0 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI PhoH PF02562.11 gi|57640654|ref|YP_183132.1| - 0.092 11.9 0.0 1.5 7.9 0.0 2.2 2 0 0 2 2 2 0 PhoH-like protein IstB_IS21 PF01695.12 gi|57640654|ref|YP_183132.1| - 0.11 11.9 0.0 0.29 10.5 0.0 1.6 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_19 PF13245.1 gi|57640654|ref|YP_183132.1| - 0.11 12.2 0.0 0.29 10.9 0.0 1.7 1 0 0 1 1 1 0 Part of AAA domain QRPTase_N PF02749.11 gi|57640655|ref|YP_183133.1| - 4.8e-08 32.7 0.0 6.8e-08 32.2 0.0 1.2 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain QRPTase_C PF01729.14 gi|57640655|ref|YP_183133.1| - 0.038 13.5 0.3 0.047 13.2 0.2 1.2 1 0 0 1 1 1 0 Quinolinate phosphoribosyl transferase, C-terminal domain GWT1 PF06423.7 gi|57640655|ref|YP_183133.1| - 0.1 12.7 0.0 0.14 12.2 0.0 1.3 1 0 0 1 1 1 0 GWT1 DUF2250 PF10007.4 gi|57640656|ref|YP_183134.1| - 3.9e-35 119.6 0.7 5.3e-35 119.2 0.5 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) TrmB PF01978.14 gi|57640656|ref|YP_183134.1| - 0.0095 15.6 0.0 0.024 14.3 0.0 1.8 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|57640656|ref|YP_183134.1| - 0.012 15.2 0.1 0.043 13.4 0.0 1.9 2 0 0 2 2 2 0 MarR family DUF4423 PF14394.1 gi|57640656|ref|YP_183134.1| - 0.1 12.1 0.0 0.15 11.5 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) PEMT PF04191.8 gi|57640657|ref|YP_183135.1| - 3.3e-05 23.9 2.9 0.00012 22.1 2.0 1.9 1 1 0 1 1 1 1 Phospholipid methyltransferase ICMT PF04140.9 gi|57640657|ref|YP_183135.1| - 5e-05 23.4 0.1 8.7e-05 22.6 0.0 1.5 1 1 0 1 1 1 1 Isoprenylcysteine carboxyl methyltransferase (ICMT) family PGPGW PF09656.5 gi|57640657|ref|YP_183135.1| - 0.031 13.5 0.2 0.031 13.5 0.2 2.5 2 0 0 2 2 2 0 Putative transmembrane protein (PGPGW) Nitro_FeMo-Co PF02579.12 gi|57640658|ref|YP_183136.1| - 2.9e-14 52.8 0.0 3.6e-14 52.6 0.0 1.1 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor Nitro_FeMo-Co PF02579.12 gi|57640659|ref|YP_183137.1| - 4.8e-22 77.8 0.2 6.2e-22 77.4 0.2 1.1 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor Pollen_allerg_2 PF01620.11 gi|57640659|ref|YP_183137.1| - 1.8 8.8 8.2 3.5 7.9 5.7 1.4 1 0 0 1 1 1 0 Ribonuclease (pollen allergen) Herpes_LMP1 PF05297.6 gi|57640660|ref|YP_183138.1| - 0.51 9.2 2.4 0.53 9.1 1.7 1.0 1 0 0 1 1 1 0 Herpesvirus latent membrane protein 1 (LMP1) ABC2_membrane PF01061.19 gi|57640661|ref|YP_183139.1| - 2.6e-26 92.0 23.6 2.6e-26 92.0 16.4 1.6 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|57640661|ref|YP_183139.1| - 1.2e-17 63.9 30.1 1.2e-17 63.9 20.9 1.4 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|57640661|ref|YP_183139.1| - 3.9e-07 29.4 27.3 4.8e-07 29.1 18.9 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|57640661|ref|YP_183139.1| - 3.3e-05 22.8 26.6 0.0049 15.7 18.5 2.5 1 1 0 1 1 1 1 ABC-2 family transporter protein Fumarate_red_D PF02313.12 gi|57640661|ref|YP_183139.1| - 0.004 17.0 2.1 0.004 17.0 1.4 2.4 3 0 0 3 3 3 1 Fumarate reductase subunit D ABC2_membrane_5 PF13346.1 gi|57640661|ref|YP_183139.1| - 0.25 10.6 24.2 1.1 8.4 16.8 1.8 1 1 0 1 1 1 0 ABC-2 family transporter protein ABC_tran PF00005.22 gi|57640662|ref|YP_183140.1| - 1.8e-28 99.5 0.0 3.1e-28 98.7 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|57640662|ref|YP_183140.1| - 9.5e-17 61.8 0.0 1e-14 55.1 0.0 2.2 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|57640662|ref|YP_183140.1| - 0.00033 20.8 0.1 0.0014 18.8 0.1 1.9 2 1 0 2 2 2 1 AAA domain AAA_10 PF12846.2 gi|57640662|ref|YP_183140.1| - 0.00086 18.8 0.0 0.31 10.4 0.0 2.6 3 0 0 3 3 3 1 AAA-like domain AAA_16 PF13191.1 gi|57640662|ref|YP_183140.1| - 0.0017 18.4 0.1 0.0053 16.7 0.0 2.0 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.1 gi|57640662|ref|YP_183140.1| - 0.0025 17.3 0.1 0.0047 16.4 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|57640662|ref|YP_183140.1| - 0.0075 15.3 0.0 0.045 12.8 0.0 1.9 1 1 1 2 2 2 1 AAA ATPase domain SMC_N PF02463.14 gi|57640662|ref|YP_183140.1| - 0.0092 15.2 0.0 1.5 8.0 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|57640662|ref|YP_183140.1| - 0.014 15.7 0.4 0.022 15.0 0.3 1.6 1 1 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|57640662|ref|YP_183140.1| - 0.023 14.4 0.7 0.18 11.5 0.5 2.2 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA PF00004.24 gi|57640662|ref|YP_183140.1| - 0.044 13.9 1.1 0.25 11.5 0.8 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) SbcCD_C PF13558.1 gi|57640662|ref|YP_183140.1| - 0.056 13.3 0.0 0.14 12.0 0.0 1.7 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_14 PF13173.1 gi|57640662|ref|YP_183140.1| - 0.071 13.0 0.0 3.7 7.4 0.0 2.3 1 1 0 1 1 1 0 AAA domain SRP54 PF00448.17 gi|57640662|ref|YP_183140.1| - 0.072 12.5 0.2 0.14 11.6 0.1 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_28 PF13521.1 gi|57640662|ref|YP_183140.1| - 0.08 12.8 0.2 0.23 11.4 0.2 1.8 2 0 0 2 2 1 0 AAA domain DUF258 PF03193.11 gi|57640662|ref|YP_183140.1| - 0.094 11.8 0.1 0.56 9.3 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function, DUF258 DUF4162 PF13732.1 gi|57640662|ref|YP_183140.1| - 0.1 13.1 0.0 0.53 10.8 0.0 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4162) AAA_30 PF13604.1 gi|57640662|ref|YP_183140.1| - 0.11 12.1 0.2 0.29 10.6 0.1 1.7 2 0 0 2 2 2 0 AAA domain AAA_13 PF13166.1 gi|57640662|ref|YP_183140.1| - 0.11 10.8 0.0 0.54 8.6 0.0 1.8 2 0 0 2 2 2 0 AAA domain Mg_chelatase PF01078.16 gi|57640662|ref|YP_183140.1| - 0.13 11.3 0.1 1.7 7.7 0.0 2.1 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_24 PF13479.1 gi|57640662|ref|YP_183140.1| - 0.16 11.5 0.1 1.4 8.4 0.0 2.1 2 0 0 2 2 2 0 AAA domain PQQ_2 PF13360.1 gi|57640663|ref|YP_183141.1| - 6.3e-15 55.2 4.2 2.1e-07 30.6 0.4 3.0 1 1 2 3 3 3 3 PQQ-like domain PQQ_3 PF13570.1 gi|57640663|ref|YP_183141.1| - 9.1e-13 48.0 11.3 0.016 15.4 0.0 6.6 6 2 1 7 7 7 4 PQQ-like domain Methyltransf_11 PF08241.7 gi|57640664|ref|YP_183142.1| - 8.5e-26 90.2 0.0 1.2e-25 89.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|57640664|ref|YP_183142.1| - 7.2e-19 67.8 0.0 8.5e-19 67.6 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|57640664|ref|YP_183142.1| - 1.7e-16 60.0 0.0 2.2e-16 59.7 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.1 gi|57640664|ref|YP_183142.1| - 2.4e-16 59.8 0.0 2.7e-16 59.6 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|57640664|ref|YP_183142.1| - 6.2e-14 52.2 0.0 8.9e-14 51.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|57640664|ref|YP_183142.1| - 1e-12 48.5 0.0 1.5e-12 48.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|57640664|ref|YP_183142.1| - 1.7e-12 47.5 0.0 2.5e-12 47.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|57640664|ref|YP_183142.1| - 5e-08 32.9 0.0 6.8e-08 32.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.7 gi|57640664|ref|YP_183142.1| - 0.00072 18.9 0.0 0.00098 18.5 0.0 1.1 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW TehB PF03848.9 gi|57640664|ref|YP_183142.1| - 0.0015 17.6 0.0 0.002 17.3 0.0 1.1 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_3 PF01596.12 gi|57640664|ref|YP_183142.1| - 0.0016 17.5 0.0 0.0028 16.7 0.0 1.3 1 0 0 1 1 1 1 O-methyltransferase UPF0020 PF01170.13 gi|57640664|ref|YP_183142.1| - 0.0019 17.7 0.0 0.0029 17.1 0.0 1.4 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 NodS PF05401.6 gi|57640664|ref|YP_183142.1| - 0.011 15.1 0.0 0.015 14.6 0.0 1.1 1 0 0 1 1 1 0 Nodulation protein S (NodS) MTS PF05175.9 gi|57640664|ref|YP_183142.1| - 0.018 14.3 0.0 0.029 13.7 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase small domain Methyltransf_29 PF03141.11 gi|57640664|ref|YP_183142.1| - 0.16 10.2 0.0 0.2 9.9 0.0 1.1 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase UPF0051 PF01458.12 gi|57640665|ref|YP_183143.1| - 3.2e-59 200.1 0.0 4.3e-59 199.7 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) ABC_tran PF00005.22 gi|57640666|ref|YP_183144.1| - 5.1e-23 81.8 0.0 6.9e-23 81.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|57640666|ref|YP_183144.1| - 2.8e-12 47.2 1.3 1.1e-10 41.9 0.9 2.1 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|57640666|ref|YP_183144.1| - 1.6e-05 24.2 0.1 0.0091 15.2 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_25 PF13481.1 gi|57640666|ref|YP_183144.1| - 5e-05 22.7 0.0 0.00018 21.0 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|57640666|ref|YP_183144.1| - 0.00048 19.6 0.0 0.00094 18.6 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|57640666|ref|YP_183144.1| - 0.00065 19.8 0.1 0.0017 18.4 0.1 1.7 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|57640666|ref|YP_183144.1| - 0.0027 18.0 0.0 0.0053 17.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain MutS_V PF00488.16 gi|57640666|ref|YP_183144.1| - 0.0032 16.9 0.1 0.54 9.6 0.0 2.1 2 0 0 2 2 2 1 MutS domain V DUF258 PF03193.11 gi|57640666|ref|YP_183144.1| - 0.005 16.0 0.0 0.008 15.3 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_10 PF12846.2 gi|57640666|ref|YP_183144.1| - 0.013 14.9 0.1 0.13 11.6 0.0 2.0 2 0 0 2 2 2 0 AAA-like domain AAA_13 PF13166.1 gi|57640666|ref|YP_183144.1| - 0.016 13.6 0.0 0.039 12.4 0.0 1.5 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.1 gi|57640666|ref|YP_183144.1| - 0.041 13.7 0.0 0.065 13.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|57640666|ref|YP_183144.1| - 0.052 14.3 0.2 0.085 13.6 0.1 1.6 1 1 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|57640666|ref|YP_183144.1| - 0.054 13.1 0.1 0.49 10.0 0.0 2.1 2 0 0 2 2 2 0 NACHT domain ANTAR PF03861.9 gi|57640666|ref|YP_183144.1| - 0.057 13.0 0.0 0.11 12.1 0.0 1.4 1 0 0 1 1 1 0 ANTAR domain AAA_14 PF13173.1 gi|57640666|ref|YP_183144.1| - 0.074 12.9 0.1 0.29 11.0 0.0 2.0 2 1 0 3 3 3 0 AAA domain Arch_ATPase PF01637.13 gi|57640666|ref|YP_183144.1| - 0.088 12.4 0.2 0.27 10.8 0.0 1.8 2 0 0 2 2 2 0 Archaeal ATPase IstB_IS21 PF01695.12 gi|57640666|ref|YP_183144.1| - 0.092 12.1 0.1 1 8.7 0.0 2.0 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA PF00004.24 gi|57640666|ref|YP_183144.1| - 0.11 12.6 0.2 0.4 10.8 0.1 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.1 gi|57640666|ref|YP_183144.1| - 0.11 12.4 0.0 0.28 11.1 0.0 1.7 2 0 0 2 2 2 0 AAA domain RNA12 PF10443.4 gi|57640666|ref|YP_183144.1| - 0.17 10.3 0.0 0.22 9.9 0.0 1.1 1 0 0 1 1 1 0 RNA12 protein Nitro_FeMo-Co PF02579.12 gi|57640667|ref|YP_183145.1| - 7.1e-24 83.7 0.1 1e-23 83.2 0.0 1.2 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor DUF104 PF01954.11 gi|57640668|ref|YP_183146.1| - 3e-17 62.4 8.0 3.4e-17 62.2 5.6 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF104 Smoothelin PF12510.3 gi|57640668|ref|YP_183146.1| - 0.0092 15.8 0.3 0.019 14.8 0.2 1.5 1 0 0 1 1 1 1 Smoothelin cytoskeleton protein Imm2 PF14426.1 gi|57640668|ref|YP_183146.1| - 0.098 12.6 1.0 0.1 12.5 0.7 1.3 1 0 0 1 1 1 0 Immunity protein Imm2 PIN PF01850.16 gi|57640669|ref|YP_183147.1| - 1.1e-26 93.4 0.1 1.5e-26 93.1 0.1 1.1 1 0 0 1 1 1 1 PIN domain Stk19 PF10494.4 gi|57640669|ref|YP_183147.1| - 0.048 13.0 0.0 0.097 12.0 0.0 1.6 1 1 1 2 2 2 0 Serine-threonine protein kinase 19 Lactamase_B PF00753.22 gi|57640670|ref|YP_183148.1| - 5.4e-19 68.6 2.5 1.1e-18 67.6 1.8 1.6 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|57640670|ref|YP_183148.1| - 6e-09 35.7 0.0 8.8e-09 35.1 0.0 1.4 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|57640670|ref|YP_183148.1| - 0.0059 16.3 0.0 0.009 15.7 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain adh_short_C2 PF13561.1 gi|57640671|ref|YP_183149.1| - 8.4e-33 114.1 0.0 1.1e-32 113.7 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.20 gi|57640671|ref|YP_183149.1| - 1.3e-16 61.0 0.0 1.7e-16 60.5 0.0 1.2 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|57640671|ref|YP_183149.1| - 7.8e-08 32.1 0.0 1.3e-07 31.5 0.0 1.3 1 0 0 1 1 1 1 KR domain 3HCDH_N PF02737.13 gi|57640671|ref|YP_183149.1| - 0.00024 20.8 0.0 0.00043 19.9 0.0 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_10 PF13460.1 gi|57640671|ref|YP_183149.1| - 0.00037 20.5 0.0 0.00087 19.3 0.0 1.5 1 1 0 1 1 1 1 NADH(P)-binding UDPG_MGDP_dh_N PF03721.9 gi|57640671|ref|YP_183149.1| - 0.0021 17.4 0.0 0.0033 16.8 0.0 1.2 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Methyltransf_18 PF12847.2 gi|57640671|ref|YP_183149.1| - 0.0082 16.7 0.0 0.042 14.4 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain TrkA_N PF02254.13 gi|57640671|ref|YP_183149.1| - 0.017 15.1 0.2 0.034 14.1 0.1 1.4 1 0 0 1 1 1 0 TrkA-N domain Glyco_tran_WecB PF03808.8 gi|57640671|ref|YP_183149.1| - 0.017 14.5 0.0 0.028 13.8 0.0 1.3 1 0 0 1 1 1 0 Glycosyl transferase WecB/TagA/CpsF family Epimerase PF01370.16 gi|57640671|ref|YP_183149.1| - 0.041 13.2 0.1 0.16 11.3 0.1 1.8 1 1 0 1 1 1 0 NAD dependent epimerase/dehydratase family Saccharop_dh PF03435.13 gi|57640671|ref|YP_183149.1| - 0.055 12.4 0.2 0.091 11.7 0.1 1.3 1 0 0 1 1 1 0 Saccharopine dehydrogenase DUF1537 PF07005.6 gi|57640671|ref|YP_183149.1| - 0.098 12.3 0.5 0.49 10.0 0.0 2.3 3 0 0 3 3 3 0 Protein of unknown function, DUF1537 Methyltransf_11 PF08241.7 gi|57640671|ref|YP_183149.1| - 0.14 12.6 0.0 1.4 9.4 0.0 2.2 2 0 0 2 2 2 0 Methyltransferase domain DUF1776 PF08643.5 gi|57640671|ref|YP_183149.1| - 0.16 11.0 0.0 0.32 10.0 0.0 1.4 1 0 0 1 1 1 0 Fungal family of unknown function (DUF1776) DUF835 PF05763.7 gi|57640672|ref|YP_183150.1| - 4.4e-34 116.9 0.2 5.2e-34 116.7 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF835) Fer4_7 PF12838.2 gi|57640674|ref|YP_183152.1| - 1.8e-09 37.7 10.4 2.6e-09 37.3 7.2 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|57640674|ref|YP_183152.1| - 4.6e-08 32.5 13.3 2.6e-06 27.0 3.2 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|57640674|ref|YP_183152.1| - 1.6e-07 31.9 11.7 1e-06 29.3 8.1 2.0 1 1 0 1 1 1 1 4Fe-4S double cluster binding domain Fer4_10 PF13237.1 gi|57640674|ref|YP_183152.1| - 2.2e-07 30.5 7.7 5e-05 23.0 7.8 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|57640674|ref|YP_183152.1| - 2.5e-07 29.9 14.9 3e-07 29.7 2.3 3.0 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|57640674|ref|YP_183152.1| - 5.9e-07 29.0 11.6 3.6e-05 23.4 2.2 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_11 PF13247.1 gi|57640674|ref|YP_183152.1| - 0.00032 20.5 4.9 0.00038 20.2 3.4 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|57640674|ref|YP_183152.1| - 0.00039 20.5 12.6 0.0028 17.8 2.2 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|57640674|ref|YP_183152.1| - 0.00091 19.4 11.8 0.0034 17.6 8.4 1.8 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|57640674|ref|YP_183152.1| - 0.0028 18.0 13.6 0.012 16.1 4.6 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_21 PF14697.1 gi|57640674|ref|YP_183152.1| - 0.0035 17.1 10.6 0.0063 16.3 0.8 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|57640674|ref|YP_183152.1| - 0.0092 15.9 8.9 0.017 15.1 1.1 2.2 1 1 2 3 3 3 2 4Fe-4S dicluster domain zf-CCHC_4 PF14392.1 gi|57640674|ref|YP_183152.1| - 0.034 13.8 1.2 0.034 13.8 0.9 2.8 2 1 0 2 2 2 0 Zinc knuckle Fer4_17 PF13534.1 gi|57640674|ref|YP_183152.1| - 0.035 14.4 11.3 0.61 10.4 7.8 2.2 1 1 0 1 1 1 0 4Fe-4S dicluster domain DUF326 PF03860.11 gi|57640674|ref|YP_183152.1| - 1.9 8.4 8.6 7.8 6.5 0.2 2.6 2 1 0 2 2 2 0 Domain of Unknown Function (DUF326) Fer4_18 PF13746.1 gi|57640674|ref|YP_183152.1| - 5.3 7.5 14.0 0.13 12.6 2.0 2.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain ABM PF03992.11 gi|57640676|ref|YP_183154.1| - 3.6e-05 23.7 0.1 4.8e-05 23.3 0.0 1.2 1 0 0 1 1 1 1 Antibiotic biosynthesis monooxygenase DUF998 PF06197.8 gi|57640677|ref|YP_183155.1| - 2.2e-29 102.0 24.3 2.4e-29 101.9 16.8 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF998) Ldr_toxin PF13940.1 gi|57640677|ref|YP_183155.1| - 0.051 13.3 5.0 0.44 10.3 0.7 3.0 2 0 0 2 2 2 0 Toxin Ldr, type I toxin-antitoxin system BofA PF07441.6 gi|57640677|ref|YP_183155.1| - 1.4 9.0 12.5 1.5 8.8 2.1 2.5 2 0 0 2 2 2 0 SigmaK-factor processing regulatory protein BofA DUF63 PF01889.12 gi|57640678|ref|YP_183156.1| - 4.9e-89 299.0 16.8 5.5e-89 298.8 11.7 1.0 1 0 0 1 1 1 1 Membrane protein of unknown function DUF63 Polysacc_synt_C PF14667.1 gi|57640678|ref|YP_183156.1| - 1.8 8.3 15.4 33 4.2 0.3 3.3 2 1 0 2 2 2 0 Polysaccharide biosynthesis C-terminal domain CbiQ PF02361.11 gi|57640680|ref|YP_183158.1| - 1.9e-37 129.0 15.0 3e-37 128.3 10.4 1.3 1 1 0 1 1 1 1 Cobalt transport protein ABC_tran PF00005.22 gi|57640681|ref|YP_183159.1| - 7.3e-32 110.5 0.0 9.5e-32 110.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|57640681|ref|YP_183159.1| - 5.6e-15 56.0 0.1 9.7e-09 35.5 0.0 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|57640681|ref|YP_183159.1| - 6.1e-09 35.4 0.0 2.9e-07 29.9 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|57640681|ref|YP_183159.1| - 4.6e-05 23.8 0.0 5.5e-05 23.5 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|57640681|ref|YP_183159.1| - 7e-05 22.9 0.1 0.0005 20.2 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|57640681|ref|YP_183159.1| - 0.00039 19.8 0.0 0.00079 18.9 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|57640681|ref|YP_183159.1| - 0.00048 20.1 0.2 0.0025 17.8 0.1 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_19 PF13245.1 gi|57640681|ref|YP_183159.1| - 0.00065 19.3 0.0 0.043 13.5 0.0 2.3 2 0 0 2 2 2 1 Part of AAA domain AAA_13 PF13166.1 gi|57640681|ref|YP_183159.1| - 0.00066 18.2 0.0 0.056 11.9 0.1 2.1 1 1 1 2 2 2 1 AAA domain AAA_14 PF13173.1 gi|57640681|ref|YP_183159.1| - 0.00083 19.2 0.0 0.013 15.4 0.0 2.1 2 0 0 2 2 2 1 AAA domain Mg_chelatase PF01078.16 gi|57640681|ref|YP_183159.1| - 0.0014 17.8 0.0 0.0025 17.0 0.0 1.3 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI NACHT PF05729.7 gi|57640681|ref|YP_183159.1| - 0.0022 17.7 0.0 0.0048 16.5 0.0 1.7 1 0 0 1 1 1 1 NACHT domain Arch_ATPase PF01637.13 gi|57640681|ref|YP_183159.1| - 0.0022 17.7 0.0 0.0029 17.3 0.0 1.5 1 1 0 1 1 1 1 Archaeal ATPase AAA_17 PF13207.1 gi|57640681|ref|YP_183159.1| - 0.0024 18.6 0.4 0.006 17.4 0.1 1.9 2 1 0 2 2 1 1 AAA domain SbcCD_C PF13558.1 gi|57640681|ref|YP_183159.1| - 0.003 17.4 0.1 0.08 12.8 0.0 2.2 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_33 PF13671.1 gi|57640681|ref|YP_183159.1| - 0.0031 17.3 0.1 0.0059 16.4 0.0 1.5 1 0 0 1 1 1 1 AAA domain MobB PF03205.9 gi|57640681|ref|YP_183159.1| - 0.0037 16.9 0.0 0.0066 16.1 0.0 1.4 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B SRP54 PF00448.17 gi|57640681|ref|YP_183159.1| - 0.0051 16.2 0.0 0.0079 15.6 0.0 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain AAA PF00004.24 gi|57640681|ref|YP_183159.1| - 0.0055 16.8 0.0 0.012 15.7 0.0 1.7 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|57640681|ref|YP_183159.1| - 0.0074 16.0 0.0 0.013 15.2 0.0 1.5 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) DUF258 PF03193.11 gi|57640681|ref|YP_183159.1| - 0.01 15.0 0.0 0.014 14.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF258 HAD PF12710.2 gi|57640681|ref|YP_183159.1| - 0.011 15.9 0.0 0.019 15.1 0.0 1.4 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase NB-ARC PF00931.17 gi|57640681|ref|YP_183159.1| - 0.014 14.3 0.1 0.022 13.6 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain AAA_18 PF13238.1 gi|57640681|ref|YP_183159.1| - 0.014 15.6 0.0 0.041 14.1 0.0 1.8 2 0 0 2 2 2 0 AAA domain NTPase_1 PF03266.10 gi|57640681|ref|YP_183159.1| - 0.015 14.9 0.0 0.04 13.6 0.0 1.7 1 0 0 1 1 1 0 NTPase Zeta_toxin PF06414.7 gi|57640681|ref|YP_183159.1| - 0.016 14.3 0.0 0.026 13.6 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin AAA_10 PF12846.2 gi|57640681|ref|YP_183159.1| - 0.023 14.1 0.0 0.16 11.3 0.0 2.0 2 0 0 2 2 2 0 AAA-like domain IstB_IS21 PF01695.12 gi|57640681|ref|YP_183159.1| - 0.028 13.8 0.1 0.18 11.2 0.0 1.9 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_28 PF13521.1 gi|57640681|ref|YP_183159.1| - 0.047 13.6 0.1 0.086 12.7 0.1 1.6 1 1 0 1 1 1 0 AAA domain AAA_24 PF13479.1 gi|57640681|ref|YP_183159.1| - 0.055 13.0 0.0 0.098 12.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|57640681|ref|YP_183159.1| - 0.061 12.8 0.0 0.11 12.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain UPF0079 PF02367.12 gi|57640681|ref|YP_183159.1| - 0.071 12.7 0.1 0.13 11.9 0.1 1.4 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_15 PF13175.1 gi|57640681|ref|YP_183159.1| - 0.092 11.7 0.0 2.1 7.2 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain T2SE PF00437.15 gi|57640681|ref|YP_183159.1| - 0.12 11.2 0.0 0.21 10.4 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein HTH_11 PF08279.7 gi|57640682|ref|YP_183160.1| - 3.8e-13 48.8 0.0 7.7e-13 47.8 0.0 1.5 1 0 0 1 1 1 1 HTH domain BPL_LplA_LipB PF03099.14 gi|57640682|ref|YP_183160.1| - 1.9e-12 47.2 0.0 2.9e-12 46.6 0.0 1.3 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family HTH_24 PF13412.1 gi|57640682|ref|YP_183160.1| - 3.5e-06 26.3 0.0 6.2e-06 25.5 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|57640682|ref|YP_183160.1| - 0.00058 19.6 0.0 0.0012 18.5 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_10 PF04967.7 gi|57640682|ref|YP_183160.1| - 0.0014 18.1 0.0 0.013 15.1 0.0 2.2 2 0 0 2 2 2 1 HTH DNA binding domain HTH_AsnC-type PF13404.1 gi|57640682|ref|YP_183160.1| - 0.006 16.0 0.1 0.012 15.0 0.0 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_36 PF13730.1 gi|57640682|ref|YP_183160.1| - 0.018 15.1 0.0 0.034 14.2 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_22 PF13309.1 gi|57640682|ref|YP_183160.1| - 0.022 14.4 0.0 0.6 9.9 0.0 2.4 2 0 0 2 2 2 0 HTH domain HTH_39 PF14090.1 gi|57640682|ref|YP_183160.1| - 0.025 14.0 0.0 0.047 13.1 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Fe_dep_repress PF01325.14 gi|57640682|ref|YP_183160.1| - 0.031 14.2 0.0 0.13 12.2 0.0 2.0 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain Rrf2 PF02082.15 gi|57640682|ref|YP_183160.1| - 0.035 14.2 0.2 0.093 12.8 0.0 1.9 2 0 0 2 2 2 0 Transcriptional regulator HTH_5 PF01022.15 gi|57640682|ref|YP_183160.1| - 0.041 13.5 0.0 0.079 12.6 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family YbjN PF10722.4 gi|57640682|ref|YP_183160.1| - 0.11 12.5 0.0 1.2 9.1 0.0 2.1 2 0 0 2 2 2 0 Putative bacterial sensory transduction regulator MarR_2 PF12802.2 gi|57640682|ref|YP_183160.1| - 0.11 12.1 0.0 0.24 11.1 0.0 1.5 1 0 0 1 1 1 0 MarR family BioY PF02632.9 gi|57640683|ref|YP_183161.1| - 2.3e-41 140.8 15.7 3.2e-41 140.4 10.9 1.1 1 0 0 1 1 1 1 BioY family DUF3816 PF12822.2 gi|57640683|ref|YP_183161.1| - 2.8e-06 27.3 17.9 3.6e-06 26.9 12.4 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3816) 7TM-7TMR_HD PF07698.6 gi|57640683|ref|YP_183161.1| - 0.017 14.5 12.9 0.034 13.6 8.9 1.5 1 1 0 1 1 1 0 7TM receptor with intracellular HD hydrolase NTP_transf_3 PF12804.2 gi|57640684|ref|YP_183162.1| - 0.0021 18.1 0.0 0.0028 17.7 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain DUF3647 PF12363.3 gi|57640684|ref|YP_183162.1| - 0.1 12.6 0.0 0.4 10.8 0.0 1.9 1 1 0 1 1 1 0 Phage protein DUF3096 PF11295.3 gi|57640684|ref|YP_183162.1| - 0.23 11.0 0.7 0.4 10.2 0.5 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3096) DUF1931 PF09123.6 gi|57640685|ref|YP_183163.1| - 6.6e-49 165.4 2.4 7.4e-49 165.2 1.7 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1931) Wzt_C PF14524.1 gi|57640686|ref|YP_183164.1| - 0.01 15.5 0.1 0.015 15.0 0.1 1.3 1 0 0 1 1 1 0 Wzt C-terminal domain DUF897 PF05982.7 gi|57640686|ref|YP_183164.1| - 0.047 12.4 0.0 0.047 12.4 0.0 1.2 1 1 0 1 1 1 0 Domain of unknown function (DUF897) DUF3153 PF11353.3 gi|57640686|ref|YP_183164.1| - 0.099 12.0 0.7 0.35 10.2 0.5 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF3153) Bromo_coat PF01318.13 gi|57640686|ref|YP_183164.1| - 0.12 12.1 0.0 0.16 11.6 0.0 1.2 1 0 0 1 1 1 0 Bromovirus coat protein Peptidase_S9 PF00326.16 gi|57640687|ref|YP_183165.1| - 8.5e-59 198.3 0.0 1.2e-58 197.8 0.0 1.2 1 0 0 1 1 1 1 Prolyl oligopeptidase family Peptidase_S15 PF02129.13 gi|57640687|ref|YP_183165.1| - 3.7e-10 39.6 0.0 2.1e-07 30.6 0.1 2.2 1 1 1 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) DPPIV_N PF00930.16 gi|57640687|ref|YP_183165.1| - 1e-09 37.5 0.0 0.019 13.5 0.0 3.8 2 1 2 4 4 4 3 Dipeptidyl peptidase IV (DPP IV) N-terminal region Abhydrolase_5 PF12695.2 gi|57640687|ref|YP_183165.1| - 1.2e-09 38.0 0.0 1.9e-09 37.4 0.0 1.3 1 0 0 1 1 1 1 Alpha/beta hydrolase family PD40 PF07676.7 gi|57640687|ref|YP_183165.1| - 5.8e-08 32.2 0.0 7.1e-07 28.7 0.0 3.0 4 0 0 4 4 4 1 WD40-like Beta Propeller Repeat AXE1 PF05448.7 gi|57640687|ref|YP_183165.1| - 1.6e-07 30.1 0.1 5e-06 25.2 0.1 2.1 1 1 0 1 1 1 1 Acetyl xylan esterase (AXE1) Abhydrolase_6 PF12697.2 gi|57640687|ref|YP_183165.1| - 1.5e-06 28.2 0.0 6.9e-06 26.0 0.0 1.9 1 1 0 1 1 1 1 Alpha/beta hydrolase family DLH PF01738.13 gi|57640687|ref|YP_183165.1| - 0.014 14.6 0.0 0.053 12.7 0.0 1.8 1 1 0 1 1 1 0 Dienelactone hydrolase family O-antigen_lig PF13425.1 gi|57640688|ref|YP_183166.1| - 0.0043 17.0 0.2 0.0061 16.5 0.2 1.2 1 0 0 1 1 1 1 O-antigen ligase like membrane protein CbtB PF09489.5 gi|57640688|ref|YP_183166.1| - 6.1 6.8 6.1 10 6.0 0.4 2.4 2 0 0 2 2 2 0 Probable cobalt transporter subunit (CbtB) Helicase_RecD PF05127.9 gi|57640689|ref|YP_183167.1| - 2.3e-55 186.9 0.0 4.3e-55 186.0 0.0 1.5 1 0 0 1 1 1 1 Helicase GNAT_acetyltr_2 PF13718.1 gi|57640689|ref|YP_183167.1| - 9.5e-53 178.4 0.0 4.5e-52 176.2 0.0 2.0 1 1 0 1 1 1 1 GNAT acetyltransferase 2 DUF1726 PF08351.6 gi|57640689|ref|YP_183167.1| - 1.3e-29 101.7 0.0 4.4e-29 100.0 0.0 2.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1726) tRNA_bind_2 PF13725.1 gi|57640689|ref|YP_183167.1| - 5.6e-09 36.0 0.0 2.4e-08 34.0 0.0 2.0 2 0 0 2 2 2 1 Possible tRNA binding domain Acetyltransf_7 PF13508.1 gi|57640689|ref|YP_183167.1| - 2.2e-05 24.5 0.0 9.2e-05 22.5 0.0 2.2 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|57640689|ref|YP_183167.1| - 3e-05 23.9 0.0 0.00012 22.0 0.0 2.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family NYN PF01936.13 gi|57640690|ref|YP_183168.1| - 2.3e-18 66.8 0.0 2.8e-18 66.5 0.0 1.1 1 0 0 1 1 1 1 NYN domain DUF374 PF04028.8 gi|57640690|ref|YP_183168.1| - 0.0053 15.9 0.1 0.025 13.7 0.1 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF374) DUF460 PF04312.8 gi|57640690|ref|YP_183168.1| - 0.025 14.1 0.1 0.12 11.8 0.0 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF460) NYN PF01936.13 gi|57640691|ref|YP_183169.1| - 4.7e-21 75.6 0.1 5.8e-21 75.2 0.1 1.1 1 0 0 1 1 1 1 NYN domain DUF460 PF04312.8 gi|57640691|ref|YP_183169.1| - 0.00016 21.2 1.1 0.0085 15.6 0.0 2.3 1 1 1 2 2 2 2 Protein of unknown function (DUF460) GlnE PF03710.10 gi|57640691|ref|YP_183169.1| - 0.1 11.8 0.2 0.16 11.1 0.1 1.4 1 1 0 1 1 1 0 Glutamate-ammonia ligase adenylyltransferase SBP_bac_6 PF13343.1 gi|57640692|ref|YP_183170.1| - 6.8e-29 100.8 4.9 8.8e-29 100.5 3.4 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.1 gi|57640692|ref|YP_183170.1| - 5.8e-26 91.5 0.0 8.7e-26 90.9 0.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.1 gi|57640692|ref|YP_183170.1| - 2e-25 90.0 2.2 2.9e-25 89.5 1.5 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|57640692|ref|YP_183170.1| - 5.1e-18 65.8 7.7 7.8e-18 65.2 5.4 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein Amidohydro_1 PF01979.15 gi|57640693|ref|YP_183171.1| - 1e-42 147.0 0.1 1.2e-42 146.7 0.1 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_4 PF13147.1 gi|57640693|ref|YP_183171.1| - 1.2e-11 45.1 0.0 8.3e-11 42.4 0.0 2.0 1 1 0 1 1 1 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|57640693|ref|YP_183171.1| - 2.2e-10 40.3 0.4 5.4e-07 29.1 0.0 3.0 2 1 0 2 2 2 2 Amidohydrolase family Amidohydro_5 PF13594.1 gi|57640693|ref|YP_183171.1| - 1e-08 34.8 0.1 4.3e-08 32.8 0.0 2.1 2 0 0 2 2 2 1 Amidohydrolase DAO PF01266.19 gi|57640693|ref|YP_183171.1| - 0.052 12.4 0.1 0.7 8.7 0.0 2.2 2 1 0 2 2 2 0 FAD dependent oxidoreductase A_deaminase PF00962.17 gi|57640693|ref|YP_183171.1| - 0.1 11.4 0.0 0.22 10.3 0.0 1.5 1 1 0 1 1 1 0 Adenosine/AMP deaminase tRNA-synt_2 PF00152.15 gi|57640694|ref|YP_183172.1| - 4.8e-81 272.1 0.0 6.6e-81 271.6 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.20 gi|57640694|ref|YP_183172.1| - 2.5e-15 56.0 0.9 5e-15 55.1 0.6 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain TGT PF01702.13 gi|57640695|ref|YP_183173.1| - 2e-54 184.3 0.0 2.8e-54 183.9 0.0 1.2 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase TGT_C1 PF14809.1 gi|57640695|ref|YP_183173.1| - 1.2e-41 140.3 1.2 3.2e-41 138.9 0.8 1.8 1 0 0 1 1 1 1 C1 domain of tRNA-guanine transglycosylase dimerisation TGT_C2 PF14810.1 gi|57640695|ref|YP_183173.1| - 8.5e-27 92.8 0.1 2.8e-26 91.1 0.0 2.0 1 0 0 1 1 1 1 Patch-forming domain C2 of tRNA-guanine transglycosylase PUA PF01472.15 gi|57640695|ref|YP_183173.1| - 2.5e-18 65.5 0.1 1e-17 63.6 0.1 2.1 2 0 0 2 2 2 1 PUA domain PHO4 PF01384.15 gi|57640696|ref|YP_183174.1| - 7.3e-63 212.1 26.6 3.4e-62 209.9 18.4 1.8 1 1 0 1 1 1 1 Phosphate transporter family SBF PF01758.11 gi|57640696|ref|YP_183174.1| - 0.16 11.3 11.1 0.17 11.2 6.2 2.1 2 1 0 2 2 2 0 Sodium Bile acid symporter family Glycos_transf_2 PF00535.21 gi|57640697|ref|YP_183175.1| - 2.6e-36 124.8 0.0 3.8e-36 124.3 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|57640697|ref|YP_183175.1| - 3.7e-35 121.7 0.0 4.6e-35 121.4 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|57640697|ref|YP_183175.1| - 2.3e-18 66.5 1.6 4e-18 65.8 1.1 1.4 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.1 gi|57640697|ref|YP_183175.1| - 2.9e-14 52.7 0.0 4.4e-14 52.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_2 PF10111.4 gi|57640697|ref|YP_183175.1| - 7.6e-07 28.4 0.0 1e-06 28.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Chitin_synth_2 PF03142.10 gi|57640697|ref|YP_183175.1| - 0.00054 18.4 0.0 0.11 10.8 0.0 2.9 3 0 0 3 3 3 1 Chitin synthase DUF1469 PF07332.6 gi|57640697|ref|YP_183175.1| - 0.01 15.5 0.4 0.01 15.5 0.2 2.1 2 1 1 3 3 3 1 Protein of unknown function (DUF1469) DUF3849 PF12960.2 gi|57640697|ref|YP_183175.1| - 0.15 12.0 0.0 11 6.0 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3849) DEAD_assoc PF08494.6 gi|57640699|ref|YP_183177.1| - 5.1e-59 199.1 0.5 1e-58 198.1 0.4 1.6 1 0 0 1 1 1 1 DEAD/H associated DEAD PF00270.24 gi|57640699|ref|YP_183177.1| - 1.6e-28 99.2 0.0 4.6e-28 97.8 0.0 1.8 2 0 0 2 2 2 1 DEAD/DEAH box helicase LAGLIDADG_3 PF14528.1 gi|57640699|ref|YP_183177.1| - 1.3e-20 73.4 4.5 1.6e-13 50.6 0.3 3.7 4 0 0 4 4 4 2 LAGLIDADG-like domain Intein_splicing PF14890.1 gi|57640699|ref|YP_183177.1| - 3e-13 49.3 0.0 2.1e-12 46.5 0.0 2.1 1 1 0 1 1 1 1 Intein splicing domain ResIII PF04851.10 gi|57640699|ref|YP_183177.1| - 6.5e-10 39.1 0.0 1.4e-09 38.0 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_C PF00271.26 gi|57640699|ref|YP_183177.1| - 8.8e-08 31.9 0.0 1.5e-05 24.8 0.0 2.6 2 0 0 2 2 2 1 Helicase conserved C-terminal domain AAA_23 PF13476.1 gi|57640699|ref|YP_183177.1| - 0.0079 16.5 0.6 0.22 11.8 0.0 2.5 2 0 0 2 2 2 1 AAA domain SNF2_N PF00176.18 gi|57640699|ref|YP_183177.1| - 0.018 13.8 0.0 0.046 12.5 0.0 1.7 1 0 0 1 1 1 0 SNF2 family N-terminal domain HTH_19 PF12844.2 gi|57640699|ref|YP_183177.1| - 0.077 13.0 1.4 0.31 11.1 0.4 2.5 2 1 0 2 2 2 0 Helix-turn-helix domain ANTAR PF03861.9 gi|57640699|ref|YP_183177.1| - 0.12 11.9 1.4 0.31 10.6 0.1 2.2 2 0 0 2 2 2 0 ANTAR domain Gp_dh_C PF02800.15 gi|57640700|ref|YP_183178.1| - 3.8e-27 94.6 0.1 5.3e-27 94.1 0.1 1.2 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Gp_dh_N PF00044.19 gi|57640700|ref|YP_183178.1| - 1.3e-24 86.9 1.0 9.9e-24 84.0 0.2 2.5 2 1 0 2 2 2 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DapB_N PF01113.15 gi|57640700|ref|YP_183178.1| - 8.2e-15 54.8 0.5 6.2e-14 51.9 0.1 2.2 1 1 1 2 2 2 1 Dihydrodipicolinate reductase, N-terminus GFO_IDH_MocA PF01408.17 gi|57640700|ref|YP_183178.1| - 0.00022 21.7 0.0 0.0033 17.9 0.0 2.5 1 1 1 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold 2-Hacid_dh_C PF02826.14 gi|57640700|ref|YP_183178.1| - 0.0012 18.0 0.1 0.019 14.1 0.1 2.3 1 1 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_3 PF03447.11 gi|57640700|ref|YP_183178.1| - 0.0032 17.8 0.0 0.1 12.9 0.0 2.8 2 1 0 2 2 2 1 Homoserine dehydrogenase, NAD binding domain Semialdhyde_dh PF01118.19 gi|57640700|ref|YP_183178.1| - 0.0097 16.2 0.0 0.023 14.9 0.0 1.7 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain NAD_binding_10 PF13460.1 gi|57640700|ref|YP_183178.1| - 0.047 13.7 0.0 0.28 11.1 0.0 2.2 2 1 1 3 3 3 0 NADH(P)-binding DUF3764 PF12594.3 gi|57640700|ref|YP_183178.1| - 0.098 12.4 0.1 0.26 11.0 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3764) DUF167 PF02594.11 gi|57640703|ref|YP_183181.1| - 9.6e-28 95.9 0.3 1.1e-27 95.6 0.2 1.1 1 0 0 1 1 1 1 Uncharacterised ACR, YggU family COG1872 DUF402 PF04167.8 gi|57640704|ref|YP_183182.1| - 5.7e-20 70.9 2.0 8.9e-20 70.3 1.4 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF402) DUF3447 PF11929.3 gi|57640704|ref|YP_183182.1| - 0.12 12.1 0.0 0.89 9.3 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF3447) PadR PF03551.9 gi|57640705|ref|YP_183183.1| - 9.9e-17 60.4 1.0 9.9e-17 60.4 0.7 1.8 2 0 0 2 2 2 1 Transcriptional regulator PadR-like family HTH_27 PF13463.1 gi|57640705|ref|YP_183183.1| - 0.0024 18.1 1.7 0.078 13.3 0.1 2.8 2 2 2 4 4 4 1 Winged helix DNA-binding domain HTH_45 PF14947.1 gi|57640705|ref|YP_183183.1| - 0.0038 16.9 2.8 0.0051 16.5 0.1 2.4 3 0 0 3 3 3 1 Winged helix-turn-helix AphA_like PF14557.1 gi|57640705|ref|YP_183183.1| - 0.0045 16.5 0.0 0.017 14.6 0.0 1.7 1 1 1 2 2 2 1 Putative AphA-like transcriptional regulator HxlR PF01638.12 gi|57640705|ref|YP_183183.1| - 0.018 14.6 0.7 0.065 12.8 0.1 2.1 1 1 1 2 2 2 0 HxlR-like helix-turn-helix HTH_34 PF13601.1 gi|57640705|ref|YP_183183.1| - 0.026 14.5 0.1 0.088 12.8 0.0 1.9 2 1 0 2 2 2 0 Winged helix DNA-binding domain AAA_assoc_C PF09821.4 gi|57640705|ref|YP_183183.1| - 0.033 14.4 0.4 2.3 8.5 0.0 2.3 1 1 1 2 2 2 0 C-terminal AAA-associated domain HTH_40 PF14493.1 gi|57640705|ref|YP_183183.1| - 0.034 14.3 0.2 0.084 13.1 0.2 1.7 1 1 0 1 1 1 0 Helix-turn-helix domain Retrotrans_gag PF03732.12 gi|57640705|ref|YP_183183.1| - 0.074 13.1 0.2 0.14 12.2 0.1 1.5 1 1 0 1 1 1 0 Retrotransposon gag protein DUF4265 PF14085.1 gi|57640705|ref|YP_183183.1| - 0.081 12.6 0.0 0.24 11.1 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4265) TRIC PF05197.8 gi|57640705|ref|YP_183183.1| - 0.086 12.2 0.0 0.12 11.8 0.0 1.2 1 0 0 1 1 1 0 TRIC channel DUF1319 PF07028.6 gi|57640705|ref|YP_183183.1| - 0.17 12.0 1.6 0.3 11.2 1.0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF1319) TrmB PF01978.14 gi|57640705|ref|YP_183183.1| - 0.39 10.4 4.5 1.1 9.0 0.8 3.2 2 1 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB ATG16 PF08614.6 gi|57640706|ref|YP_183184.1| - 0.0071 16.1 1.6 0.015 15.1 1.1 1.5 1 0 0 1 1 1 1 Autophagy protein 16 (ATG16) DUF1446 PF07287.6 gi|57640706|ref|YP_183184.1| - 0.0074 14.8 0.2 0.014 13.9 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1446) Syntaxin-6_N PF09177.6 gi|57640706|ref|YP_183184.1| - 0.053 13.9 0.9 0.18 12.2 0.6 2.0 1 1 0 1 1 1 0 Syntaxin 6, N-terminal YycC PF14174.1 gi|57640706|ref|YP_183184.1| - 0.12 12.0 0.2 0.4 10.3 0.0 2.0 2 0 0 2 2 2 0 YycC-like protein MMPL PF03176.10 gi|57640707|ref|YP_183185.1| - 2e-69 233.8 4.0 5.3e-36 123.9 0.2 2.2 2 0 0 2 2 2 2 MMPL family ACR_tran PF00873.14 gi|57640707|ref|YP_183185.1| - 0.0003 18.3 0.4 0.0003 18.3 0.3 2.1 2 1 0 2 2 2 1 AcrB/AcrD/AcrF family 5_nucleotid_C PF02872.13 gi|57640707|ref|YP_183185.1| - 0.057 13.4 0.0 0.13 12.2 0.0 1.5 1 0 0 1 1 1 0 5'-nucleotidase, C-terminal domain GNVR PF13807.1 gi|57640707|ref|YP_183185.1| - 0.069 12.9 0.1 1.4 8.7 0.0 2.9 2 0 0 2 2 2 0 G-rich domain on putative tyrosine kinase AAA_15 PF13175.1 gi|57640708|ref|YP_183186.1| - 3.6e-23 82.3 39.1 3.6e-23 82.3 27.1 3.3 2 1 0 2 2 2 1 AAA ATPase domain AAA_21 PF13304.1 gi|57640708|ref|YP_183186.1| - 5.8e-18 65.8 22.1 5.8e-18 65.8 15.3 3.0 2 2 0 2 2 2 1 AAA domain AAA_23 PF13476.1 gi|57640708|ref|YP_183186.1| - 3.2e-07 30.8 29.1 3.2e-07 30.8 20.2 2.6 2 1 0 2 2 2 1 AAA domain SMC_N PF02463.14 gi|57640708|ref|YP_183186.1| - 6.6e-07 28.7 5.2 2e-05 23.9 0.6 3.0 2 2 1 3 3 3 2 RecF/RecN/SMC N terminal domain DUF2813 PF11398.3 gi|57640708|ref|YP_183186.1| - 3.5e-06 26.3 2.3 0.00026 20.2 0.5 3.4 3 1 1 4 4 4 2 Protein of unknown function (DUF2813) AAA_29 PF13555.1 gi|57640708|ref|YP_183186.1| - 0.0024 17.3 0.0 0.0047 16.4 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain MMR_HSR1 PF01926.18 gi|57640708|ref|YP_183186.1| - 0.011 15.6 2.1 0.053 13.4 0.8 2.8 2 1 0 2 2 2 0 50S ribosome-binding GTPase INTS5_N PF14837.1 gi|57640708|ref|YP_183186.1| - 0.012 15.0 0.5 0.022 14.1 0.1 1.6 2 0 0 2 2 2 0 Integrator complex subunit 5 N-terminus Mem_trans PF03547.13 gi|57640709|ref|YP_183187.1| - 9e-10 37.3 22.2 6.2e-06 24.7 5.9 2.2 1 1 1 2 2 2 2 Membrane transport protein FeoB_C PF07664.7 gi|57640709|ref|YP_183187.1| - 1 8.7 9.0 3.1 7.2 0.0 3.5 3 0 0 3 3 3 0 Ferrous iron transport protein B C terminus Peptidase_M42 PF05343.9 gi|57640710|ref|YP_183188.1| - 4.7e-80 268.4 0.0 5.6e-80 268.2 0.0 1.0 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.23 gi|57640710|ref|YP_183188.1| - 4.7e-05 22.9 0.1 8.2e-05 22.1 0.0 1.4 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M28 PF04389.12 gi|57640710|ref|YP_183188.1| - 0.023 14.4 0.2 0.57 9.8 0.0 2.3 2 0 0 2 2 2 0 Peptidase family M28 AAA_14 PF13173.1 gi|57640711|ref|YP_183189.1| - 1e-06 28.6 0.0 1.8e-06 27.8 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|57640711|ref|YP_183189.1| - 0.0011 19.1 0.1 0.19 11.8 0.1 2.5 1 1 1 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|57640711|ref|YP_183189.1| - 0.0088 16.0 0.1 0.36 10.7 0.0 2.3 1 1 1 2 2 2 2 AAA ATPase domain AAA_17 PF13207.1 gi|57640711|ref|YP_183189.1| - 0.018 15.8 0.2 0.21 12.3 0.0 2.4 2 1 0 2 2 2 0 AAA domain Phage_integrase PF00589.17 gi|57640712|ref|YP_183190.1| - 3.6e-50 170.0 0.0 6.8e-50 169.1 0.0 1.5 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_1 PF02899.12 gi|57640712|ref|YP_183190.1| - 4e-16 58.9 1.7 2.4e-15 56.4 0.2 2.7 2 1 1 3 3 3 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.1 gi|57640712|ref|YP_183190.1| - 1.5e-10 41.2 0.3 2.1e-09 37.5 0.0 2.4 2 0 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Integrase_1 PF12835.2 gi|57640712|ref|YP_183190.1| - 6.7e-06 25.9 0.3 1.4e-05 24.9 0.0 1.6 2 0 0 2 2 2 1 Integrase HALZ PF02183.13 gi|57640713|ref|YP_183191.1| - 4.1e-06 26.3 10.3 0.0083 15.8 2.7 3.3 1 1 1 2 2 2 2 Homeobox associated leucine zipper Toprim PF01751.17 gi|57640713|ref|YP_183191.1| - 4.7e-06 26.5 0.3 1.9e-05 24.5 0.2 2.0 1 1 0 1 1 1 1 Toprim domain GrpE PF01025.14 gi|57640713|ref|YP_183191.1| - 0.0013 18.3 2.0 0.031 13.8 0.7 2.5 2 0 0 2 2 2 1 GrpE DUF972 PF06156.8 gi|57640713|ref|YP_183191.1| - 0.0015 18.8 1.8 0.0015 18.8 1.2 2.0 2 1 1 3 3 3 1 Protein of unknown function (DUF972) GAS PF13851.1 gi|57640713|ref|YP_183191.1| - 0.0017 17.6 6.7 0.0025 17.0 4.1 1.6 1 1 0 1 1 1 1 Growth-arrest specific micro-tubule binding IncA PF04156.9 gi|57640713|ref|YP_183191.1| - 0.0026 17.3 3.1 0.0043 16.6 2.2 1.3 1 0 0 1 1 1 1 IncA protein Toprim_4 PF13662.1 gi|57640713|ref|YP_183191.1| - 0.013 15.4 1.3 0.043 13.8 0.2 2.3 2 1 0 2 2 2 0 Toprim domain HSCB_C PF07743.8 gi|57640713|ref|YP_183191.1| - 0.017 15.5 1.3 0.047 14.1 0.9 1.8 1 0 0 1 1 1 0 HSCB C-terminal oligomerisation domain Toprim_2 PF13155.1 gi|57640713|ref|YP_183191.1| - 0.019 15.3 0.1 0.056 13.7 0.0 1.8 2 0 0 2 2 2 0 Toprim-like DivIVA PF05103.8 gi|57640713|ref|YP_183191.1| - 0.02 14.9 2.3 0.066 13.2 1.6 1.9 1 0 0 1 1 1 0 DivIVA protein COG6 PF06419.6 gi|57640713|ref|YP_183191.1| - 0.026 12.6 0.7 0.039 12.0 0.5 1.2 1 0 0 1 1 1 0 Conserved oligomeric complex COG6 V_ATPase_I PF01496.14 gi|57640713|ref|YP_183191.1| - 0.029 12.2 1.2 0.035 11.9 0.8 1.2 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family DUF904 PF06005.7 gi|57640713|ref|YP_183191.1| - 0.033 14.4 4.9 0.033 14.4 3.4 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF904) APG6 PF04111.7 gi|57640713|ref|YP_183191.1| - 0.098 11.6 3.6 0.15 11.0 2.5 1.2 1 0 0 1 1 1 0 Autophagy protein Apg6 DUF342 PF03961.8 gi|57640713|ref|YP_183191.1| - 0.1 11.0 1.3 0.15 10.4 0.9 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF342) DivIC PF04977.10 gi|57640713|ref|YP_183191.1| - 0.11 11.9 6.5 0.33 10.4 4.5 1.8 1 1 0 1 1 1 0 Septum formation initiator bZIP_1 PF00170.16 gi|57640713|ref|YP_183191.1| - 0.12 12.3 6.9 0.11 12.4 2.5 2.4 1 1 1 2 2 2 0 bZIP transcription factor Herpes_BLRF2 PF05812.7 gi|57640713|ref|YP_183191.1| - 0.12 12.1 0.5 0.31 10.8 0.3 1.8 1 0 0 1 1 1 0 Herpesvirus BLRF2 protein Mod_r PF07200.8 gi|57640713|ref|YP_183191.1| - 0.39 10.6 6.1 0.19 11.6 2.6 1.6 2 0 0 2 2 1 0 Modifier of rudimentary (Mod(r)) protein Cep57_CLD_2 PF14197.1 gi|57640713|ref|YP_183191.1| - 1.8 8.5 7.7 0.79 9.7 3.1 2.1 2 0 0 2 2 2 0 Centrosome localisation domain of PPC89 SfsA PF03749.8 gi|57640714|ref|YP_183192.1| - 6.5e-51 172.8 0.0 7.7e-51 172.6 0.0 1.0 1 0 0 1 1 1 1 Sugar fermentation stimulation protein Peptidase_M42 PF05343.9 gi|57640716|ref|YP_183194.1| - 3.2e-114 380.6 0.3 3.7e-114 380.4 0.2 1.0 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.23 gi|57640716|ref|YP_183194.1| - 3.6e-13 49.4 0.2 7.2e-13 48.4 0.1 1.6 2 0 0 2 2 2 1 Peptidase family M20/M25/M40 Peptidase_M28 PF04389.12 gi|57640716|ref|YP_183194.1| - 0.00088 19.0 0.0 0.0069 16.1 0.0 2.0 2 0 0 2 2 2 1 Peptidase family M28 Peptidase_M18 PF02127.10 gi|57640716|ref|YP_183194.1| - 0.0064 15.0 0.0 0.27 9.6 0.0 2.2 2 0 0 2 2 2 2 Aminopeptidase I zinc metalloprotease (M18) DEAD_2 PF06733.10 gi|57640719|ref|YP_183197.1| - 1.5e-38 131.9 0.4 4.7e-38 130.3 0.3 1.7 2 0 0 2 2 2 1 DEAD_2 Helicase_C_2 PF13307.1 gi|57640719|ref|YP_183197.1| - 2.1e-38 131.8 0.0 3.5e-37 127.9 0.0 2.2 2 0 0 2 2 2 1 Helicase C-terminal domain ResIII PF04851.10 gi|57640719|ref|YP_183197.1| - 3.6e-09 36.7 0.0 1.5e-08 34.7 0.0 2.0 2 1 0 2 2 2 1 Type III restriction enzyme, res subunit DEAD PF00270.24 gi|57640719|ref|YP_183197.1| - 1.9e-07 30.7 0.0 8.1e-05 22.1 0.0 2.8 2 0 0 2 2 2 2 DEAD/DEAH box helicase AAA_19 PF13245.1 gi|57640719|ref|YP_183197.1| - 0.00026 20.6 0.0 0.0006 19.5 0.0 1.6 1 0 0 1 1 1 1 Part of AAA domain AAA_30 PF13604.1 gi|57640719|ref|YP_183197.1| - 0.0038 16.8 0.0 0.014 14.9 0.0 2.0 2 0 0 2 2 2 1 AAA domain SNF2_N PF00176.18 gi|57640719|ref|YP_183197.1| - 0.0073 15.1 0.0 0.056 12.2 0.0 2.1 1 1 0 1 1 1 1 SNF2 family N-terminal domain PhoH PF02562.11 gi|57640719|ref|YP_183197.1| - 0.037 13.2 0.0 5.9 6.0 0.0 2.4 2 0 0 2 2 2 0 PhoH-like protein AAA_22 PF13401.1 gi|57640719|ref|YP_183197.1| - 0.043 13.9 0.0 0.78 9.8 0.0 2.4 2 0 0 2 2 2 0 AAA domain AAA_11 PF13086.1 gi|57640719|ref|YP_183197.1| - 0.065 12.7 0.0 0.13 11.7 0.0 1.5 1 1 0 1 1 1 0 AAA domain Rhomboid PF01694.17 gi|57640721|ref|YP_183199.1| - 6.3e-32 110.6 19.0 6.3e-32 110.6 13.1 1.5 2 0 0 2 2 2 1 Rhomboid family DUF1751 PF08551.5 gi|57640721|ref|YP_183199.1| - 7.7e-07 29.3 2.9 7.7e-07 29.3 2.0 1.9 2 1 0 2 2 2 1 Eukaryotic integral membrane protein (DUF1751) Inositol_P PF00459.20 gi|57640722|ref|YP_183200.1| - 1.9e-47 161.8 0.0 3.4e-47 161.0 0.0 1.3 1 1 0 1 1 1 1 Inositol monophosphatase family FBPase PF00316.15 gi|57640722|ref|YP_183200.1| - 2.9e-08 32.9 0.1 6.5e-08 31.7 0.0 1.5 2 0 0 2 2 2 1 Fructose-1-6-bisphosphatase DUF63 PF01889.12 gi|57640723|ref|YP_183201.1| - 1.1e-79 268.3 11.1 1.3e-79 268.1 7.7 1.0 1 0 0 1 1 1 1 Membrane protein of unknown function DUF63 DUF2929 PF11151.3 gi|57640723|ref|YP_183201.1| - 0.022 14.8 1.0 0.16 12.0 0.1 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2929) Fe-ADH_2 PF13685.1 gi|57640724|ref|YP_183202.1| - 3.5e-70 236.1 2.3 4.4e-70 235.8 1.6 1.1 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.14 gi|57640724|ref|YP_183202.1| - 7.2e-26 90.6 3.2 2.5e-25 88.8 2.2 1.7 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.15 gi|57640724|ref|YP_183202.1| - 3.6e-13 49.0 0.5 9.2e-13 47.7 0.3 1.6 1 1 0 1 1 1 1 3-dehydroquinate synthase PrpR_N PF06506.6 gi|57640724|ref|YP_183202.1| - 0.0081 15.5 0.3 0.21 10.9 0.1 2.4 2 0 0 2 2 2 1 Propionate catabolism activator AIRC PF00731.15 gi|57640724|ref|YP_183202.1| - 0.038 13.2 0.2 0.083 12.1 0.2 1.6 1 0 0 1 1 1 0 AIR carboxylase TSCPD PF12637.2 gi|57640724|ref|YP_183202.1| - 0.12 12.2 0.0 3.1 7.7 0.0 2.8 3 0 0 3 3 3 0 TSCPD domain UPF0179 PF03684.8 gi|57640725|ref|YP_183203.1| - 1.1e-47 161.2 0.1 1.2e-47 161.0 0.1 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0179) Plasmid_stabil PF05016.9 gi|57640726|ref|YP_183204.1| - 4.3e-10 39.8 0.9 4.8e-10 39.6 0.6 1.1 1 0 0 1 1 1 1 Plasmid stabilisation system protein Gp49 PF05973.9 gi|57640726|ref|YP_183204.1| - 3.1e-06 27.1 0.3 3.8e-06 26.8 0.2 1.1 1 0 0 1 1 1 1 Phage derived protein Gp49-like (DUF891) Plasmid_killer PF05015.8 gi|57640726|ref|YP_183204.1| - 0.058 13.5 0.0 0.068 13.3 0.0 1.3 1 0 0 1 1 1 0 Plasmid maintenance system killer protein Lep_receptor_Ig PF06328.6 gi|57640726|ref|YP_183204.1| - 0.12 12.3 0.0 0.15 11.8 0.0 1.2 1 0 0 1 1 1 0 Ig-like C2-type domain Transposase_22 PF02994.9 gi|57640727|ref|YP_183205.1| - 0.64 8.4 4.9 0.7 8.3 3.4 1.0 1 0 0 1 1 1 0 L1 transposable element GCHY-1 PF02649.9 gi|57640728|ref|YP_183206.1| - 7e-68 228.8 1.0 8e-68 228.6 0.7 1.0 1 0 0 1 1 1 1 Type I GTP cyclohydrolase folE2 Val_tRNA-synt_C PF10458.4 gi|57640728|ref|YP_183206.1| - 0.066 13.2 2.3 0.42 10.7 0.1 2.3 2 0 0 2 2 2 0 Valyl tRNA synthetase tRNA binding arm BPS PF08947.5 gi|57640728|ref|YP_183206.1| - 1.2 8.8 4.3 0.61 9.7 0.1 2.4 3 0 0 3 3 3 0 BPS (Between PH and SH2) McrBC PF10117.4 gi|57640729|ref|YP_183207.1| - 4.6e-61 206.5 0.0 5.4e-61 206.2 0.0 1.0 1 0 0 1 1 1 1 McrBC 5-methylcytosine restriction system component NERD PF08378.6 gi|57640729|ref|YP_183207.1| - 0.03 14.6 0.0 0.067 13.4 0.0 1.5 1 0 0 1 1 1 0 Nuclease-related domain AAA_5 PF07728.9 gi|57640730|ref|YP_183208.1| - 2.6e-17 62.8 0.0 7.3e-17 61.3 0.0 1.8 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_22 PF13401.1 gi|57640730|ref|YP_183208.1| - 9.2e-05 22.5 0.0 0.00025 21.1 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA PF00004.24 gi|57640730|ref|YP_183208.1| - 0.00013 22.1 0.0 0.00046 20.3 0.0 1.9 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.1 gi|57640730|ref|YP_183208.1| - 0.003 18.3 0.4 0.012 16.3 0.1 2.3 2 1 0 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|57640730|ref|YP_183208.1| - 0.0042 16.5 0.0 0.0077 15.6 0.0 1.4 1 0 0 1 1 1 1 AAA domain Arch_ATPase PF01637.13 gi|57640730|ref|YP_183208.1| - 0.0054 16.4 0.1 0.011 15.5 0.1 1.4 1 0 0 1 1 1 1 Archaeal ATPase IstB_IS21 PF01695.12 gi|57640730|ref|YP_183208.1| - 0.0063 15.9 0.0 0.011 15.1 0.0 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_18 PF13238.1 gi|57640730|ref|YP_183208.1| - 0.0097 16.2 0.1 0.031 14.5 0.0 2.0 2 0 0 2 2 1 1 AAA domain AAA_16 PF13191.1 gi|57640730|ref|YP_183208.1| - 0.0097 15.9 0.0 0.02 14.8 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_19 PF13245.1 gi|57640730|ref|YP_183208.1| - 0.02 14.6 0.0 0.045 13.5 0.0 1.5 1 0 0 1 1 1 0 Part of AAA domain AAA_14 PF13173.1 gi|57640730|ref|YP_183208.1| - 0.025 14.5 0.1 1.3 8.9 0.0 2.7 1 1 0 1 1 1 0 AAA domain TIP49 PF06068.8 gi|57640730|ref|YP_183208.1| - 0.05 12.3 0.0 0.22 10.2 0.0 1.9 2 0 0 2 2 2 0 TIP49 C-terminus AAA_24 PF13479.1 gi|57640730|ref|YP_183208.1| - 0.052 13.1 0.0 0.089 12.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_11 PF13086.1 gi|57640730|ref|YP_183208.1| - 0.057 12.9 0.0 0.096 12.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|57640730|ref|YP_183208.1| - 0.06 13.3 0.0 0.21 11.5 0.0 1.9 3 0 0 3 3 3 0 AAA domain RNA_helicase PF00910.17 gi|57640730|ref|YP_183208.1| - 0.11 12.6 0.0 0.45 10.7 0.0 2.0 2 0 0 2 2 2 0 RNA helicase RuvB_N PF05496.7 gi|57640730|ref|YP_183208.1| - 0.16 10.9 0.0 0.3 10.0 0.0 1.4 1 0 0 1 1 1 0 Holliday junction DNA helicase ruvB N-terminus HTH_7 PF02796.10 gi|57640731|ref|YP_183209.1| - 4.1e-07 29.7 0.2 8e-07 28.8 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase DUF1699 PF08004.6 gi|57640731|ref|YP_183209.1| - 1.6e-06 27.6 0.3 3.6e-06 26.5 0.2 1.6 1 1 0 1 1 1 1 Protein of unknown function (DUF1699) HTH_29 PF13551.1 gi|57640731|ref|YP_183209.1| - 2.1e-06 27.8 0.0 0.0043 17.1 0.0 2.3 1 1 1 2 2 2 2 Winged helix-turn helix HTH_23 PF13384.1 gi|57640731|ref|YP_183209.1| - 9e-06 25.1 0.0 1.9e-05 24.1 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.1 gi|57640731|ref|YP_183209.1| - 5.7e-05 23.0 0.0 0.00014 21.7 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|57640731|ref|YP_183209.1| - 0.00038 19.8 0.2 0.0013 18.1 0.0 2.0 3 0 0 3 3 3 1 Sigma-70, region 4 HTH_Tnp_1 PF01527.15 gi|57640731|ref|YP_183209.1| - 0.0033 17.3 0.0 0.0092 15.9 0.0 1.7 2 0 0 2 2 2 1 Transposase GerE PF00196.14 gi|57640731|ref|YP_183209.1| - 0.0087 15.3 0.0 0.016 14.5 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family PAX PF00292.13 gi|57640731|ref|YP_183209.1| - 0.011 15.3 0.1 0.078 12.6 0.0 2.0 1 1 1 2 2 2 0 'Paired box' domain Terminase_5 PF06056.7 gi|57640731|ref|YP_183209.1| - 0.015 14.8 0.0 0.023 14.2 0.0 1.3 1 0 0 1 1 1 0 Putative ATPase subunit of terminase (gpP-like) AT_hook PF02178.14 gi|57640731|ref|YP_183209.1| - 0.051 13.2 0.9 0.14 11.9 0.6 1.8 1 0 0 1 1 1 0 AT hook motif GTF2I PF02946.9 gi|57640731|ref|YP_183209.1| - 0.09 12.6 0.1 0.19 11.6 0.1 1.6 1 0 0 1 1 1 0 GTF2I-like repeat HTH_Tnp_ISL3 PF13542.1 gi|57640731|ref|YP_183209.1| - 0.091 11.9 0.0 0.16 11.1 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_Tnp_IS1 PF12759.2 gi|57640731|ref|YP_183209.1| - 0.1 12.0 0.0 0.6 9.5 0.0 2.0 2 0 0 2 2 2 0 InsA C-terminal domain DUF4096 PF13340.1 gi|57640731|ref|YP_183209.1| - 0.13 12.1 0.0 0.2 11.5 0.0 1.2 1 0 0 1 1 1 0 Putative transposase of IS4/5 family (DUF4096) DUF530 PF04409.7 gi|57640732|ref|YP_183210.1| - 5.7e-161 536.0 1.2 4.2e-103 345.1 0.5 2.0 1 1 1 2 2 2 2 Protein of unknown function (DUF530) TP6A_N PF04406.9 gi|57640733|ref|YP_183211.1| - 5.1e-23 80.5 0.0 8.6e-23 79.7 0.0 1.4 1 0 0 1 1 1 1 Type IIB DNA topoisomerase RepB PF07506.6 gi|57640733|ref|YP_183211.1| - 0.002 17.9 0.1 0.57 10.0 0.0 2.4 2 0 0 2 2 2 2 RepB plasmid partitioning protein DUF2399 PF09664.5 gi|57640733|ref|YP_183211.1| - 0.011 15.5 0.0 0.02 14.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function C-terminus (DUF2399) Topo-VIb_trans PF09239.6 gi|57640734|ref|YP_183212.1| - 7e-63 210.9 0.0 1.2e-62 210.1 0.0 1.4 1 0 0 1 1 1 1 Topoisomerase VI B subunit, transducer HATPase_c PF02518.21 gi|57640734|ref|YP_183212.1| - 3.7e-13 49.1 0.2 7.4e-13 48.2 0.1 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.1 gi|57640734|ref|YP_183212.1| - 2.3e-11 43.5 0.1 4.2e-11 42.6 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.1 gi|57640734|ref|YP_183212.1| - 0.034 13.9 0.0 0.082 12.6 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain KH_1 PF00013.24 gi|57640735|ref|YP_183213.1| - 1.7e-21 75.6 8.9 2.8e-11 42.8 0.3 2.4 2 0 0 2 2 2 2 KH domain KH_3 PF13014.1 gi|57640735|ref|YP_183213.1| - 2.6e-11 42.9 9.9 8.2e-07 28.5 0.4 2.6 2 0 0 2 2 2 2 KH domain KH_2 PF07650.12 gi|57640735|ref|YP_183213.1| - 8.8e-07 28.4 7.2 0.00053 19.4 0.4 2.6 2 0 0 2 2 2 2 KH domain KH_4 PF13083.1 gi|57640735|ref|YP_183213.1| - 0.0013 18.2 3.8 0.21 11.2 0.1 3.1 2 1 1 3 3 3 2 KH domain SLS PF14611.1 gi|57640735|ref|YP_183213.1| - 0.0077 15.6 0.6 0.017 14.5 0.1 1.7 2 0 0 2 2 2 1 Mitochondrial inner-membrane-bound regulator FAD-oxidase_C PF02913.14 gi|57640735|ref|YP_183213.1| - 0.068 12.4 0.1 0.12 11.6 0.1 1.4 1 0 0 1 1 1 0 FAD linked oxidases, C-terminal domain KH_5 PF13184.1 gi|57640735|ref|YP_183213.1| - 2.4 7.9 5.5 2.5 7.9 0.5 2.4 2 0 0 2 2 2 0 NusA-like KH domain RIO1 PF01163.17 gi|57640736|ref|YP_183214.1| - 4.4e-61 205.5 0.0 8e-61 204.6 0.0 1.4 1 0 0 1 1 1 1 RIO1 family APH PF01636.18 gi|57640736|ref|YP_183214.1| - 1.4e-06 28.2 0.2 5.9e-06 26.1 0.0 2.0 1 1 1 2 2 2 1 Phosphotransferase enzyme family Kdo PF06293.9 gi|57640736|ref|YP_183214.1| - 0.028 13.4 0.1 2.2 7.2 0.0 2.3 2 0 0 2 2 2 0 Lipopolysaccharide kinase (Kdo/WaaP) family eIF-1a PF01176.14 gi|57640737|ref|YP_183215.1| - 1.8e-24 84.9 1.3 2.5e-24 84.4 0.5 1.5 2 0 0 2 2 2 1 Translation initiation factor 1A / IF-1 ABC_tran PF00005.22 gi|57640738|ref|YP_183216.1| - 3.1e-28 98.7 0.0 4.2e-28 98.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|57640738|ref|YP_183216.1| - 1.5e-18 67.8 0.0 2.5e-11 44.1 0.0 2.1 1 1 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|57640738|ref|YP_183216.1| - 4.8e-08 32.4 0.0 5.3e-07 29.0 0.0 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|57640738|ref|YP_183216.1| - 8.4e-08 31.6 0.0 0.00016 20.8 0.0 2.0 2 0 0 2 2 2 2 AAA ATPase domain AAA_10 PF12846.2 gi|57640738|ref|YP_183216.1| - 1.4e-05 24.7 0.0 0.00049 19.6 0.0 2.1 2 0 0 2 2 2 1 AAA-like domain AAA_29 PF13555.1 gi|57640738|ref|YP_183216.1| - 0.00016 21.1 0.1 0.00035 20.0 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_25 PF13481.1 gi|57640738|ref|YP_183216.1| - 0.00021 20.7 0.1 0.083 12.2 0.0 2.2 2 0 0 2 2 2 1 AAA domain DUF258 PF03193.11 gi|57640738|ref|YP_183216.1| - 0.00049 19.3 0.0 0.001 18.2 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_23 PF13476.1 gi|57640738|ref|YP_183216.1| - 0.00067 20.0 0.1 0.0011 19.2 0.1 1.3 1 0 0 1 1 1 1 AAA domain AAA PF00004.24 gi|57640738|ref|YP_183216.1| - 0.0012 19.0 0.1 0.067 13.4 0.0 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_13 PF13166.1 gi|57640738|ref|YP_183216.1| - 0.0016 17.0 0.0 0.11 10.9 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|57640738|ref|YP_183216.1| - 0.0016 18.1 0.0 0.0038 16.9 0.0 1.7 1 0 0 1 1 1 1 Part of AAA domain AAA_16 PF13191.1 gi|57640738|ref|YP_183216.1| - 0.0018 18.3 0.2 0.0042 17.0 0.1 1.7 1 1 0 1 1 1 1 AAA ATPase domain SbcCD_C PF13558.1 gi|57640738|ref|YP_183216.1| - 0.0026 17.6 0.2 0.021 14.7 0.1 2.0 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit UPF0079 PF02367.12 gi|57640738|ref|YP_183216.1| - 0.0028 17.2 0.1 0.0055 16.3 0.1 1.4 1 0 0 1 1 1 1 Uncharacterised P-loop hydrolase UPF0079 AAA_22 PF13401.1 gi|57640738|ref|YP_183216.1| - 0.0031 17.6 0.1 0.017 15.2 0.1 2.0 1 1 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|57640738|ref|YP_183216.1| - 0.0076 15.9 0.4 0.014 15.0 0.0 1.5 2 0 0 2 2 1 1 NACHT domain IstB_IS21 PF01695.12 gi|57640738|ref|YP_183216.1| - 0.017 14.5 0.1 0.51 9.7 0.0 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_30 PF13604.1 gi|57640738|ref|YP_183216.1| - 0.02 14.4 0.0 0.037 13.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain ATP-synt_ab PF00006.20 gi|57640738|ref|YP_183216.1| - 0.022 14.2 0.0 0.046 13.2 0.0 1.4 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain Arch_ATPase PF01637.13 gi|57640738|ref|YP_183216.1| - 0.03 14.0 0.0 0.073 12.7 0.0 1.6 2 0 0 2 2 2 0 Archaeal ATPase AAA_24 PF13479.1 gi|57640738|ref|YP_183216.1| - 0.031 13.8 0.2 0.087 12.3 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.1 gi|57640738|ref|YP_183216.1| - 0.042 13.7 0.0 0.2 11.5 0.0 1.9 2 0 0 2 2 2 0 AAA domain G-alpha PF00503.15 gi|57640738|ref|YP_183216.1| - 0.049 12.3 0.0 0.072 11.7 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit cobW PF02492.14 gi|57640738|ref|YP_183216.1| - 0.052 12.9 0.1 0.09 12.2 0.1 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain MutS_V PF00488.16 gi|57640738|ref|YP_183216.1| - 0.056 12.8 0.0 0.14 11.5 0.0 1.6 2 0 0 2 2 1 0 MutS domain V PhoH PF02562.11 gi|57640738|ref|YP_183216.1| - 0.056 12.6 0.0 0.097 11.8 0.0 1.3 1 0 0 1 1 1 0 PhoH-like protein SRP54 PF00448.17 gi|57640738|ref|YP_183216.1| - 0.074 12.4 0.1 0.13 11.6 0.1 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain DUF3584 PF12128.3 gi|57640738|ref|YP_183216.1| - 0.091 10.0 0.2 0.12 9.7 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) AAA_33 PF13671.1 gi|57640738|ref|YP_183216.1| - 0.095 12.5 0.0 0.33 10.8 0.0 1.8 2 0 0 2 2 2 0 AAA domain T2SE PF00437.15 gi|57640738|ref|YP_183216.1| - 0.1 11.4 0.0 0.14 11.0 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein PduV-EutP PF10662.4 gi|57640738|ref|YP_183216.1| - 0.13 11.6 0.1 0.26 10.7 0.1 1.4 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation Zeta_toxin PF06414.7 gi|57640738|ref|YP_183216.1| - 0.18 10.8 0.0 0.27 10.3 0.0 1.2 1 0 0 1 1 1 0 Zeta toxin ABC-3 PF00950.12 gi|57640739|ref|YP_183217.1| - 2.8e-28 98.9 36.9 3.3e-28 98.6 25.6 1.0 1 0 0 1 1 1 1 ABC 3 transport family FecCD PF01032.13 gi|57640739|ref|YP_183217.1| - 3.2e-05 22.9 36.3 5e-05 22.2 25.2 1.4 1 1 0 1 1 1 1 FecCD transport family RNase_HII PF01351.13 gi|57640740|ref|YP_183218.1| - 3.4e-49 167.1 0.0 4.9e-49 166.6 0.0 1.2 1 0 0 1 1 1 1 Ribonuclease HII DUF445 PF04286.7 gi|57640740|ref|YP_183218.1| - 0.052 13.0 0.1 0.063 12.7 0.0 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF445) DUF2029 PF09594.5 gi|57640741|ref|YP_183219.1| - 2.2e-05 24.0 17.9 2.2e-05 24.0 12.4 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF2029) PMT_2 PF13231.1 gi|57640741|ref|YP_183219.1| - 0.0029 17.5 14.8 0.0029 17.5 10.3 3.0 3 1 0 3 3 3 1 Dolichyl-phosphate-mannose-protein mannosyltransferase PMT PF02366.13 gi|57640741|ref|YP_183219.1| - 3.5 6.9 23.1 0.26 10.6 8.5 3.1 2 1 0 3 3 3 0 Dolichyl-phosphate-mannose-protein mannosyltransferase Methyltransf_31 PF13847.1 gi|57640742|ref|YP_183220.1| - 1.9e-09 37.2 0.0 3.4e-09 36.4 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|57640742|ref|YP_183220.1| - 1.5e-08 34.7 0.0 2e-08 34.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.5 gi|57640742|ref|YP_183220.1| - 2.2e-07 30.5 0.0 3.2e-07 30.0 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_18 PF12847.2 gi|57640742|ref|YP_183220.1| - 4.6e-07 30.4 0.0 9.9e-07 29.3 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|57640742|ref|YP_183220.1| - 8.8e-05 22.9 0.0 0.0012 19.3 0.0 2.3 2 0 0 2 2 2 1 Methyltransferase domain MTS PF05175.9 gi|57640742|ref|YP_183220.1| - 0.00014 21.2 0.0 0.00022 20.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.8 gi|57640742|ref|YP_183220.1| - 0.00024 20.3 0.0 0.00037 19.7 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_25 PF13649.1 gi|57640742|ref|YP_183220.1| - 0.0011 19.3 0.0 0.0022 18.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|57640742|ref|YP_183220.1| - 0.0052 16.3 0.0 0.011 15.2 0.0 1.5 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_12 PF08242.7 gi|57640742|ref|YP_183220.1| - 0.05 14.0 0.0 0.18 12.3 0.0 1.9 2 0 0 2 2 2 0 Methyltransferase domain Met_10 PF02475.11 gi|57640742|ref|YP_183220.1| - 0.075 12.6 0.0 0.11 12.0 0.0 1.3 1 0 0 1 1 1 0 Met-10+ like-protein CmcI PF04989.7 gi|57640742|ref|YP_183220.1| - 0.11 11.8 0.0 0.17 11.2 0.0 1.2 1 0 0 1 1 1 0 Cephalosporin hydroxylase AdoMet_MTase PF07757.8 gi|57640742|ref|YP_183220.1| - 0.14 12.3 0.0 0.35 11.0 0.0 1.6 1 0 0 1 1 1 0 Predicted AdoMet-dependent methyltransferase Ubie_methyltran PF01209.13 gi|57640742|ref|YP_183220.1| - 0.14 11.2 0.0 0.24 10.4 0.0 1.3 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family SIS PF01380.17 gi|57640744|ref|YP_183222.1| - 1.2e-56 189.9 0.9 3.9e-32 110.5 1.0 2.3 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.1 gi|57640744|ref|YP_183222.1| - 1.4e-25 89.8 0.0 3.4e-25 88.5 0.0 1.6 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.1 gi|57640744|ref|YP_183222.1| - 4.8e-23 81.2 0.0 1.3e-22 79.8 0.0 1.8 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|57640744|ref|YP_183222.1| - 1.4e-22 79.8 0.3 3.6e-15 55.5 0.0 2.9 1 1 1 2 2 2 2 Glutamine amidotransferases class-II SIS_2 PF13580.1 gi|57640744|ref|YP_183222.1| - 3.1e-05 23.7 0.8 0.041 13.6 0.1 3.6 3 1 1 4 4 4 1 SIS domain GATase_4 PF13230.1 gi|57640744|ref|YP_183222.1| - 0.00011 20.9 0.1 0.0003 19.5 0.0 1.6 2 0 0 2 2 2 1 Glutamine amidotransferases class-II PNP_UDP_1 PF01048.15 gi|57640744|ref|YP_183222.1| - 0.0014 17.6 0.0 0.0021 17.1 0.0 1.3 1 0 0 1 1 1 1 Phosphorylase superfamily CW_binding_2 PF04122.7 gi|57640744|ref|YP_183222.1| - 0.0037 17.4 2.1 0.6 10.3 0.3 3.0 1 1 1 2 2 2 1 Putative cell wall binding repeat 2 bact-PGI_C PF10432.4 gi|57640744|ref|YP_183222.1| - 0.0093 15.6 1.3 0.46 10.1 0.2 2.8 2 1 0 2 2 2 1 Bacterial phospho-glucose isomerase C-terminal region STT3 PF02516.9 gi|57640745|ref|YP_183223.1| - 1.8e-33 116.2 35.8 2.6e-33 115.7 24.8 1.1 1 0 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit PMT_2 PF13231.1 gi|57640745|ref|YP_183223.1| - 7.2e-08 32.4 10.1 7.2e-08 32.4 7.0 3.5 2 1 1 3 3 3 2 Dolichyl-phosphate-mannose-protein mannosyltransferase S4 PF01479.20 gi|57640745|ref|YP_183223.1| - 0.02 14.3 0.0 0.046 13.1 0.0 1.6 1 0 0 1 1 1 0 S4 domain ADK PF00406.17 gi|57640747|ref|YP_183225.1| - 4e-42 143.6 0.0 4.9e-42 143.3 0.0 1.1 1 0 0 1 1 1 1 Adenylate kinase ADK_lid PF05191.9 gi|57640747|ref|YP_183225.1| - 6.6e-22 76.8 2.5 6.6e-22 76.8 1.7 1.6 2 0 0 2 2 1 1 Adenylate kinase, active site lid AAA_17 PF13207.1 gi|57640747|ref|YP_183225.1| - 4.1e-12 46.9 0.7 8.6e-12 45.9 0.5 1.7 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|57640747|ref|YP_183225.1| - 2.8e-09 37.0 0.0 6.1e-09 35.8 0.0 1.5 2 0 0 2 2 1 1 AAA domain Zeta_toxin PF06414.7 gi|57640747|ref|YP_183225.1| - 8.4e-06 25.0 0.0 1.4e-05 24.2 0.0 1.3 1 0 0 1 1 1 1 Zeta toxin AAA_18 PF13238.1 gi|57640747|ref|YP_183225.1| - 7e-05 23.1 0.6 0.00015 22.0 0.0 2.0 2 1 0 2 2 2 1 AAA domain AAA_10 PF12846.2 gi|57640747|ref|YP_183225.1| - 0.00098 18.6 0.0 0.0016 17.9 0.0 1.3 1 0 0 1 1 1 1 AAA-like domain A2L_zn_ribbon PF08792.5 gi|57640747|ref|YP_183225.1| - 0.0017 17.7 0.1 1.4 8.5 0.0 2.5 2 0 0 2 2 2 2 A2L zinc ribbon domain AAA_22 PF13401.1 gi|57640747|ref|YP_183225.1| - 0.0055 16.8 0.0 0.018 15.2 0.0 1.9 2 0 0 2 2 2 1 AAA domain FtsK_SpoIIIE PF01580.13 gi|57640747|ref|YP_183225.1| - 0.0056 16.1 0.2 0.014 14.8 0.0 1.7 2 0 0 2 2 2 1 FtsK/SpoIIIE family Thymidylate_kin PF02223.12 gi|57640747|ref|YP_183225.1| - 0.0059 16.0 0.0 0.087 12.1 0.0 2.3 3 0 0 3 3 2 1 Thymidylate kinase Prok-RING_1 PF14446.1 gi|57640747|ref|YP_183225.1| - 0.0089 15.7 2.2 0.19 11.4 0.3 2.2 2 0 0 2 2 2 1 Prokaryotic RING finger family 1 AAA PF00004.24 gi|57640747|ref|YP_183225.1| - 0.016 15.4 0.0 0.029 14.5 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) DZR PF12773.2 gi|57640747|ref|YP_183225.1| - 0.021 14.6 0.4 0.041 13.7 0.3 1.4 1 1 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|57640747|ref|YP_183225.1| - 0.024 13.8 0.6 0.092 11.9 0.1 1.9 2 0 0 2 2 2 0 zinc-ribbon domain AAA_14 PF13173.1 gi|57640747|ref|YP_183225.1| - 0.038 13.8 0.0 0.098 12.5 0.0 1.8 1 1 0 1 1 1 0 AAA domain Cytidylate_kin2 PF13189.1 gi|57640747|ref|YP_183225.1| - 0.044 13.6 0.6 0.071 13.0 0.0 1.7 2 1 0 2 2 1 0 Cytidylate kinase-like family zf-IS66 PF13005.2 gi|57640747|ref|YP_183225.1| - 0.046 13.6 0.3 12 5.9 0.0 2.5 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 DUF3039 PF11238.3 gi|57640747|ref|YP_183225.1| - 0.047 13.1 0.3 0.08 12.3 0.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3039) zf-C4_Topoisom PF01396.14 gi|57640747|ref|YP_183225.1| - 0.074 12.5 0.7 7 6.2 0.0 2.4 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger AAA_24 PF13479.1 gi|57640747|ref|YP_183225.1| - 0.08 12.5 0.0 0.18 11.3 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.1 gi|57640747|ref|YP_183225.1| - 0.091 12.3 0.0 0.15 11.5 0.0 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain ABC_tran PF00005.22 gi|57640747|ref|YP_183225.1| - 0.092 13.0 0.0 0.11 12.7 0.0 1.3 1 0 0 1 1 1 0 ABC transporter AAA_16 PF13191.1 gi|57640747|ref|YP_183225.1| - 0.098 12.6 0.0 0.15 12.0 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain HypA PF01155.14 gi|57640747|ref|YP_183225.1| - 0.1 12.2 0.1 0.16 11.7 0.0 1.2 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Zn_ribbon_recom PF13408.1 gi|57640747|ref|YP_183225.1| - 0.11 12.8 1.0 5.2 7.4 0.1 2.4 2 0 0 2 2 2 0 Recombinase zinc beta ribbon domain Viral_helicase1 PF01443.13 gi|57640747|ref|YP_183225.1| - 0.11 11.9 0.0 0.15 11.5 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase TF_Zn_Ribbon PF08271.7 gi|57640747|ref|YP_183225.1| - 0.12 11.7 2.5 0.43 9.9 1.8 1.9 1 1 0 1 1 1 0 TFIIB zinc-binding RNA_helicase PF00910.17 gi|57640747|ref|YP_183225.1| - 0.12 12.5 0.0 0.27 11.4 0.0 1.6 1 0 0 1 1 1 0 RNA helicase zinc_ribbon_2 PF13240.1 gi|57640747|ref|YP_183225.1| - 0.16 11.4 1.3 0.37 10.3 0.9 1.6 1 1 0 1 1 1 0 zinc-ribbon domain Nudix_N_2 PF14803.1 gi|57640747|ref|YP_183225.1| - 0.23 11.1 4.0 5.9 6.6 0.4 2.4 2 0 0 2 2 2 0 Nudix N-terminal DNA_ligase_ZBD PF03119.11 gi|57640747|ref|YP_183225.1| - 2.8 7.7 5.6 2.7 7.7 0.3 2.4 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain DUF2258 PF10015.4 gi|57640748|ref|YP_183226.1| - 3e-32 110.2 3.0 5.2e-32 109.4 0.2 2.1 2 1 0 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2258) DUF244 PF03112.9 gi|57640748|ref|YP_183226.1| - 0.013 15.0 5.5 0.016 14.7 3.8 1.1 1 0 0 1 1 1 0 Uncharacterized protein family (ORF7) DUF DUF2785 PF10978.3 gi|57640748|ref|YP_183226.1| - 0.022 14.2 1.3 2.9 7.2 0.4 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2785) V_ATPase_I PF01496.14 gi|57640748|ref|YP_183226.1| - 0.023 12.5 5.2 0.022 12.6 3.6 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family HAUS6_N PF14661.1 gi|57640748|ref|YP_183226.1| - 0.036 13.4 1.9 0.044 13.1 1.3 1.1 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 6 N-terminus DUF2203 PF09969.4 gi|57640748|ref|YP_183226.1| - 0.049 13.8 5.5 2.7 8.2 1.1 2.2 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2203) Laminin_II PF06009.7 gi|57640748|ref|YP_183226.1| - 0.059 13.1 6.1 0.028 14.1 2.8 1.5 2 0 0 2 2 2 0 Laminin Domain II IMS_C PF11799.3 gi|57640748|ref|YP_183226.1| - 0.079 12.8 1.1 0.19 11.6 0.5 1.6 1 1 0 1 1 1 0 impB/mucB/samB family C-terminal domain AKNA PF12443.3 gi|57640748|ref|YP_183226.1| - 0.094 12.7 1.9 0.18 11.8 1.3 1.5 1 0 0 1 1 1 0 AT-hook-containing transcription factor DUF4546 PF15079.1 gi|57640748|ref|YP_183226.1| - 0.17 10.9 4.2 0.34 10.0 3.0 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4546) TBPIP PF07106.8 gi|57640748|ref|YP_183226.1| - 0.26 10.8 9.0 0.18 11.3 5.2 1.5 2 0 0 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) DUF3810 PF12725.2 gi|57640748|ref|YP_183226.1| - 0.35 9.7 2.5 19 4.0 1.8 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3810) APG6 PF04111.7 gi|57640748|ref|YP_183226.1| - 0.42 9.6 8.7 0.45 9.5 6.0 1.2 1 0 0 1 1 1 0 Autophagy protein Apg6 DUF1664 PF07889.7 gi|57640748|ref|YP_183226.1| - 0.97 9.2 4.1 1.8 8.3 2.8 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) AAA_23 PF13476.1 gi|57640748|ref|YP_183226.1| - 1.3 9.3 5.9 1.5 9.0 4.1 1.1 1 0 0 1 1 1 0 AAA domain DUF724 PF05266.9 gi|57640748|ref|YP_183226.1| - 1.4 8.5 11.7 2.2 7.8 8.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF724) IncA PF04156.9 gi|57640748|ref|YP_183226.1| - 2.4 7.6 11.7 3.3 7.2 8.1 1.2 1 0 0 1 1 1 0 IncA protein DUF2205 PF10224.4 gi|57640748|ref|YP_183226.1| - 2.9 7.5 10.9 8 6.1 7.3 1.8 1 1 0 1 1 1 0 Predicted coiled-coil protein (DUF2205) Ribosomal_L29 PF00831.18 gi|57640748|ref|YP_183226.1| - 8.2 6.2 14.4 0.19 11.4 2.9 3.0 1 1 1 2 2 2 0 Ribosomal L29 protein Lactamase_B PF00753.22 gi|57640749|ref|YP_183227.1| - 6.4e-21 74.8 1.0 1.3e-20 73.9 0.7 1.5 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|57640749|ref|YP_183227.1| - 5.5e-07 29.3 0.4 9.5e-07 28.5 0.3 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Flavodoxin_1 PF00258.20 gi|57640749|ref|YP_183227.1| - 9.4e-07 28.9 0.0 1.7e-06 28.1 0.0 1.4 1 0 0 1 1 1 1 Flavodoxin FMN_red PF03358.10 gi|57640749|ref|YP_183227.1| - 0.0029 17.1 0.0 0.0053 16.2 0.0 1.4 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Acetyltransf_8 PF13523.1 gi|57640749|ref|YP_183227.1| - 0.027 14.3 0.0 0.054 13.3 0.0 1.4 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Herpes_heli_pri PF05774.6 gi|57640749|ref|YP_183227.1| - 0.078 12.9 0.0 0.16 11.9 0.0 1.5 1 0 0 1 1 1 0 Herpesvirus helicase-primase complex component AhpC-TSA PF00578.16 gi|57640750|ref|YP_183228.1| - 1.2e-33 115.4 0.0 1.4e-33 115.2 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|57640750|ref|YP_183228.1| - 9.2e-22 77.1 0.0 1e-21 77.0 0.0 1.0 1 0 0 1 1 1 1 Redoxin SCO1-SenC PF02630.9 gi|57640750|ref|YP_183228.1| - 2.3e-05 24.1 0.0 4.1e-05 23.2 0.0 1.3 1 0 0 1 1 1 1 SCO1/SenC Thioredoxin_8 PF13905.1 gi|57640750|ref|YP_183228.1| - 0.0042 17.1 0.0 0.0058 16.7 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin-like GSHPx PF00255.14 gi|57640750|ref|YP_183228.1| - 0.029 13.7 0.0 0.037 13.4 0.0 1.2 1 0 0 1 1 1 0 Glutathione peroxidase Prenyltrans PF00432.16 gi|57640750|ref|YP_183228.1| - 0.032 13.8 0.0 0.27 10.8 0.0 2.1 2 0 0 2 2 2 0 Prenyltransferase and squalene oxidase repeat DUF4174 PF13778.1 gi|57640750|ref|YP_183228.1| - 0.055 13.5 0.0 0.087 12.9 0.0 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4174) DUF3107 PF11305.3 gi|57640750|ref|YP_183228.1| - 0.14 12.0 0.0 0.49 10.3 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3107) TPP_enzyme_C PF02775.16 gi|57640751|ref|YP_183229.1| - 1.9e-32 111.9 0.2 3.5e-32 111.0 0.1 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.3 gi|57640751|ref|YP_183229.1| - 4.1e-29 100.3 0.1 7.2e-29 99.5 0.1 1.4 1 0 0 1 1 1 1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal POR_N PF01855.14 gi|57640752|ref|YP_183230.1| - 2.7e-59 200.4 0.1 4e-59 199.9 0.1 1.2 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.13 gi|57640752|ref|YP_183230.1| - 2.4e-36 125.2 0.3 5.4e-36 124.0 0.2 1.6 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_N PF02776.13 gi|57640752|ref|YP_183230.1| - 0.0034 16.8 1.1 0.013 14.9 0.8 1.9 2 1 1 3 3 3 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Transketolase_C PF02780.15 gi|57640752|ref|YP_183230.1| - 0.014 15.3 0.0 0.035 14.0 0.0 1.7 1 0 0 1 1 1 0 Transketolase, C-terminal domain Glyco_trans_1_3 PF13528.1 gi|57640752|ref|YP_183230.1| - 0.073 12.2 0.2 1.7 7.7 0.0 2.4 2 0 0 2 2 2 0 Glycosyl transferase family 1 Chordopox_A20R PF05941.8 gi|57640752|ref|YP_183230.1| - 0.077 11.7 0.0 0.46 9.1 0.0 2.1 2 0 0 2 2 2 0 Chordopoxvirus A20R protein PMSR PF01625.16 gi|57640754|ref|YP_183232.1| - 1.1e-61 207.2 0.0 1.9e-61 206.5 0.0 1.3 1 0 0 1 1 1 1 Peptide methionine sulfoxide reductase SelR PF01641.13 gi|57640754|ref|YP_183232.1| - 2.1e-39 134.0 0.0 3.3e-39 133.3 0.0 1.3 1 0 0 1 1 1 1 SelR domain Laminin_G_3 PF13385.1 gi|57640756|ref|YP_183234.1| - 1.1e-16 61.4 0.0 1.8e-16 60.7 0.0 1.3 1 0 0 1 1 1 1 Concanavalin A-like lectin/glucanases superfamily SWM_repeat PF13753.1 gi|57640756|ref|YP_183234.1| - 0.041 12.9 0.3 0.059 12.4 0.2 1.1 1 0 0 1 1 1 0 Putative flagellar system-associated repeat Sialidase PF02973.11 gi|57640756|ref|YP_183234.1| - 0.042 12.8 0.0 0.47 9.3 0.0 2.1 2 0 0 2 2 2 0 Sialidase, N-terminal domain Laminin_G_1 PF00054.18 gi|57640756|ref|YP_183234.1| - 0.13 12.2 0.0 0.21 11.6 0.0 1.3 1 0 0 1 1 1 0 Laminin G domain DUF835 PF05763.7 gi|57640757|ref|YP_183235.1| - 2.7e-33 114.3 0.1 3.8e-33 113.9 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF835) UNC-50 PF05216.8 gi|57640757|ref|YP_183235.1| - 0.23 10.6 0.8 0.36 10.0 0.5 1.2 1 0 0 1 1 1 0 UNC-50 family Rubrerythrin PF02915.12 gi|57640759|ref|YP_183237.1| - 2.4e-18 66.7 5.3 3.3e-18 66.3 3.7 1.2 1 0 0 1 1 1 1 Rubrerythrin Ferritin_2 PF13668.1 gi|57640759|ref|YP_183237.1| - 0.00037 20.4 1.7 0.54 10.1 0.1 2.2 2 0 0 2 2 2 2 Ferritin-like domain FAD_binding_1 PF00667.15 gi|57640759|ref|YP_183237.1| - 0.00065 19.2 1.8 0.4 10.0 0.2 2.1 1 1 1 2 2 2 2 FAD binding domain DUF2383 PF09537.5 gi|57640759|ref|YP_183237.1| - 0.0018 18.4 1.5 1.2 9.4 0.1 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF2383) COQ7 PF03232.8 gi|57640759|ref|YP_183237.1| - 0.0067 15.9 0.9 0.067 12.6 0.1 2.0 1 1 1 2 2 2 1 Ubiquinone biosynthesis protein COQ7 DUF3231 PF11553.3 gi|57640759|ref|YP_183237.1| - 0.0097 15.4 0.2 0.78 9.2 0.0 2.1 1 1 0 2 2 2 1 Protein of unknown function (DUF3231) DUF1462 PF07315.6 gi|57640759|ref|YP_183237.1| - 0.021 14.7 1.0 0.77 9.7 0.0 2.2 1 1 0 2 2 2 0 Protein of unknown function (DUF1462) DUF4439 PF14530.1 gi|57640759|ref|YP_183237.1| - 0.08 13.4 3.2 0.18 12.3 0.5 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4439) DUF2202 PF09968.4 gi|57640759|ref|YP_183237.1| - 0.11 12.1 0.6 0.2 11.3 0.4 1.5 1 1 0 1 1 1 0 Uncharacterized protein domain (DUF2202) Mn_catalase PF05067.7 gi|57640759|ref|YP_183237.1| - 0.41 9.3 2.3 2 7.0 0.1 2.1 2 0 0 2 2 2 0 Manganese containing catalase HTH_24 PF13412.1 gi|57640760|ref|YP_183238.1| - 5.6e-06 25.6 0.1 6.2e-06 25.5 0.1 1.0 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_36 PF13730.1 gi|57640760|ref|YP_183238.1| - 0.00013 21.9 0.6 0.00027 21.0 0.1 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain HARE-HTH PF05066.8 gi|57640760|ref|YP_183238.1| - 0.00089 19.5 0.1 0.00099 19.4 0.1 1.3 1 1 0 1 1 1 1 HB1, ASXL, restriction endonuclease HTH domain MarR_2 PF12802.2 gi|57640760|ref|YP_183238.1| - 0.001 18.6 0.0 0.0012 18.4 0.0 1.0 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|57640760|ref|YP_183238.1| - 0.0017 18.6 0.0 0.002 18.4 0.0 1.0 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_IclR PF09339.5 gi|57640760|ref|YP_183238.1| - 0.0029 17.1 0.0 0.0031 17.0 0.0 1.1 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR PF01047.17 gi|57640760|ref|YP_183238.1| - 0.0038 16.8 0.0 0.0045 16.6 0.0 1.1 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.7 gi|57640760|ref|YP_183238.1| - 0.0062 16.1 0.0 0.0066 16.0 0.0 1.0 1 0 0 1 1 1 1 HTH domain TrmB PF01978.14 gi|57640760|ref|YP_183238.1| - 0.0075 15.9 0.1 0.0084 15.8 0.1 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.15 gi|57640760|ref|YP_183238.1| - 0.0077 16.3 0.0 0.008 16.2 0.0 1.1 1 0 0 1 1 1 1 Transcriptional regulator Phage_pRha PF09669.5 gi|57640760|ref|YP_183238.1| - 0.01 16.1 0.0 0.012 15.8 0.0 1.1 1 0 0 1 1 1 0 Phage regulatory protein Rha (Phage_pRha) TFIIE_alpha PF02002.12 gi|57640760|ref|YP_183238.1| - 0.031 13.7 0.1 0.033 13.6 0.1 1.0 1 0 0 1 1 1 0 TFIIE alpha subunit HTH_AsnC-type PF13404.1 gi|57640760|ref|YP_183238.1| - 0.035 13.6 0.0 0.038 13.5 0.0 1.1 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_5 PF01022.15 gi|57640760|ref|YP_183238.1| - 0.037 13.6 0.0 0.049 13.3 0.0 1.2 1 1 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_Crp_2 PF13545.1 gi|57640760|ref|YP_183238.1| - 0.043 13.5 0.0 0.054 13.3 0.0 1.2 1 1 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_20 PF12840.2 gi|57640760|ref|YP_183238.1| - 0.054 13.2 0.0 0.077 12.8 0.0 1.3 1 1 0 1 1 1 0 Helix-turn-helix domain Rubrerythrin PF02915.12 gi|57640761|ref|YP_183239.1| - 2.2e-15 57.2 16.3 3e-15 56.7 11.3 1.2 1 0 0 1 1 1 1 Rubrerythrin Ferritin_2 PF13668.1 gi|57640761|ref|YP_183239.1| - 0.002 18.0 5.1 0.0089 15.9 3.5 1.9 1 1 0 1 1 1 1 Ferritin-like domain Mn_catalase PF05067.7 gi|57640761|ref|YP_183239.1| - 0.0058 15.4 0.7 0.0098 14.6 0.2 1.5 1 1 0 1 1 1 1 Manganese containing catalase FAD_binding_1 PF00667.15 gi|57640761|ref|YP_183239.1| - 0.019 14.4 4.4 0.22 10.9 0.4 2.1 1 1 0 2 2 2 0 FAD binding domain PCP_red PF08369.5 gi|57640761|ref|YP_183239.1| - 0.038 13.8 3.6 0.89 9.4 0.2 2.9 2 1 1 3 3 3 0 Proto-chlorophyllide reductase 57 kD subunit ThylakoidFormat PF11264.3 gi|57640761|ref|YP_183239.1| - 0.1 12.1 7.3 0.14 11.7 5.1 1.2 1 0 0 1 1 1 0 Thylakoid formation protein YflT PF11181.3 gi|57640761|ref|YP_183239.1| - 0.14 12.3 2.4 1 9.5 1.2 2.2 1 1 1 2 2 2 0 Heat induced stress protein YflT Nebulin PF00880.13 gi|57640761|ref|YP_183239.1| - 3.6 7.3 5.7 1.7 8.3 0.1 3.0 3 0 0 3 3 3 0 Nebulin repeat MFS_1 PF07690.11 gi|57640762|ref|YP_183240.1| - 4.3e-20 71.7 74.8 9.1e-18 64.0 27.1 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily Phage_holin_6 PF10746.4 gi|57640762|ref|YP_183240.1| - 6.1 6.6 9.9 13 5.5 0.2 3.2 3 0 0 3 3 3 0 Phage holin family 6 Pyr_redox_2 PF07992.9 gi|57640763|ref|YP_183241.1| - 5.8e-32 111.2 0.0 1.1e-31 110.2 0.0 1.8 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|57640763|ref|YP_183241.1| - 2.5e-24 85.4 2.7 4.8e-19 68.5 0.1 3.1 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|57640763|ref|YP_183241.1| - 1e-07 31.2 4.1 0.0082 15.0 0.8 3.8 2 2 1 4 4 4 3 FAD dependent oxidoreductase Pyr_redox_3 PF13738.1 gi|57640763|ref|YP_183241.1| - 1.4e-06 28.5 0.0 2.8e-05 24.2 0.0 2.1 1 1 1 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|57640763|ref|YP_183241.1| - 4.3e-05 23.4 0.1 0.043 13.8 0.1 2.8 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.14 gi|57640763|ref|YP_183241.1| - 6.3e-05 22.1 0.8 0.041 12.9 0.3 2.5 2 1 1 3 3 3 2 FAD binding domain TrkA_N PF02254.13 gi|57640763|ref|YP_183241.1| - 0.00011 22.2 0.3 0.5 10.3 0.0 3.2 3 0 0 3 3 3 2 TrkA-N domain GIDA PF01134.17 gi|57640763|ref|YP_183241.1| - 0.0013 17.6 3.0 0.054 12.3 0.2 2.8 2 1 1 3 3 3 1 Glucose inhibited division protein A ApbA PF02558.11 gi|57640763|ref|YP_183241.1| - 0.0076 15.6 0.8 0.039 13.4 0.1 2.3 3 0 0 3 3 3 1 Ketopantoate reductase PanE/ApbA NAD_Gly3P_dh_N PF01210.18 gi|57640763|ref|YP_183241.1| - 0.009 15.7 0.0 1.2 8.8 0.0 2.3 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus FAD_binding_2 PF00890.19 gi|57640763|ref|YP_183241.1| - 0.012 14.4 1.1 5.1 5.8 0.1 3.1 3 0 0 3 3 3 0 FAD binding domain HI0933_like PF03486.9 gi|57640763|ref|YP_183241.1| - 0.012 14.0 0.3 5.8 5.2 0.3 2.9 3 0 0 3 3 3 0 HI0933-like protein 3HCDH_N PF02737.13 gi|57640763|ref|YP_183241.1| - 0.014 15.0 0.0 0.027 14.1 0.0 1.5 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Lycopene_cycl PF05834.7 gi|57640763|ref|YP_183241.1| - 0.03 13.2 0.1 4 6.2 0.1 2.1 2 0 0 2 2 2 0 Lycopene cyclase protein F420_oxidored PF03807.12 gi|57640763|ref|YP_183241.1| - 0.044 14.2 0.4 1.1 9.6 0.1 2.6 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent NAD_binding_10 PF13460.1 gi|57640763|ref|YP_183241.1| - 0.061 13.3 0.1 5.3 7.0 0.1 2.9 3 0 0 3 3 3 0 NADH(P)-binding NAD_binding_9 PF13454.1 gi|57640763|ref|YP_183241.1| - 0.086 12.6 2.0 11 5.7 0.0 3.1 3 0 0 3 3 3 0 FAD-NAD(P)-binding DUF998 PF06197.8 gi|57640764|ref|YP_183242.1| - 3.5e-31 107.9 16.1 3.9e-31 107.7 11.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF998) YfhO PF09586.5 gi|57640764|ref|YP_183242.1| - 0.0025 15.9 10.9 0.003 15.6 7.5 1.1 1 0 0 1 1 1 1 Bacterial membrane protein YfhO Pox_J1 PF03338.10 gi|57640764|ref|YP_183242.1| - 0.037 13.6 0.1 0.16 11.6 0.0 1.9 2 0 0 2 2 2 0 Poxvirus J1 protein DUF2069 PF09842.4 gi|57640764|ref|YP_183242.1| - 0.1 12.5 5.2 0.075 13.0 2.1 1.8 1 1 1 2 2 2 0 Predicted membrane protein (DUF2069) YwiC PF14256.1 gi|57640764|ref|YP_183242.1| - 0.64 10.1 9.7 1.9 8.6 0.6 2.5 1 1 2 3 3 3 0 YwiC-like protein DUF4271 PF14093.1 gi|57640764|ref|YP_183242.1| - 0.83 9.2 12.1 1.7 8.2 8.4 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4271) DUF4064 PF13273.1 gi|57640764|ref|YP_183242.1| - 0.86 9.7 10.6 0.12 12.4 2.5 2.5 1 1 2 3 3 3 0 Protein of unknown function (DUF4064) KaiC PF06745.8 gi|57640765|ref|YP_183243.1| - 1.1e-15 57.4 0.3 1.2e-15 57.2 0.2 1.0 1 0 0 1 1 1 1 KaiC DUF2075 PF09848.4 gi|57640765|ref|YP_183243.1| - 0.0005 19.1 0.0 0.00061 18.8 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) AAA_25 PF13481.1 gi|57640765|ref|YP_183243.1| - 0.001 18.5 0.0 0.0011 18.4 0.0 1.1 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.7 gi|57640765|ref|YP_183243.1| - 0.024 13.7 0.0 0.026 13.6 0.0 1.1 1 0 0 1 1 1 0 Zeta toxin AAA_24 PF13479.1 gi|57640765|ref|YP_183243.1| - 0.03 13.9 0.1 0.036 13.6 0.1 1.1 1 0 0 1 1 1 0 AAA domain FtsK_SpoIIIE PF01580.13 gi|57640765|ref|YP_183243.1| - 0.054 12.9 0.0 0.054 12.9 0.0 1.1 1 0 0 1 1 1 0 FtsK/SpoIIIE family Sigma54_activat PF00158.21 gi|57640765|ref|YP_183243.1| - 0.13 11.7 0.0 0.13 11.7 0.0 1.1 1 0 0 1 1 1 0 Sigma-54 interaction domain 1-cysPrx_C PF10417.4 gi|57640766|ref|YP_183244.1| - 4.7e-05 22.9 0.0 5.4e-05 22.7 0.0 1.2 1 0 0 1 1 1 1 C-terminal domain of 1-Cys peroxiredoxin MFS_1 PF07690.11 gi|57640768|ref|YP_183246.1| - 5e-16 58.3 35.3 5e-16 58.3 24.5 2.0 1 1 1 2 2 2 1 Major Facilitator Superfamily BT1 PF03092.11 gi|57640768|ref|YP_183246.1| - 8.6e-06 24.7 10.6 8.6e-06 24.7 7.3 1.7 2 1 0 2 2 2 1 BT1 family MFS_1_like PF12832.2 gi|57640768|ref|YP_183246.1| - 0.0013 18.5 9.0 0.01 15.6 0.0 4.4 4 1 1 5 5 5 2 MFS_1 like family Arc_trans_TRASH PF08394.5 gi|57640769|ref|YP_183247.1| - 7.2e-21 74.0 8.8 1.4e-20 73.1 6.1 1.5 1 0 0 1 1 1 1 Archaeal TRASH domain HTH_24 PF13412.1 gi|57640769|ref|YP_183247.1| - 7.2e-17 60.5 0.5 1.1e-16 59.9 0.4 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|57640769|ref|YP_183247.1| - 4e-15 55.0 2.7 5.7e-15 54.5 1.9 1.2 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.7 gi|57640769|ref|YP_183247.1| - 2.9e-09 36.4 0.1 5.7e-09 35.4 0.1 1.4 1 0 0 1 1 1 1 HTH domain HTH_5 PF01022.15 gi|57640769|ref|YP_183247.1| - 1.8e-08 33.9 0.1 3e-08 33.2 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|57640769|ref|YP_183247.1| - 1.1e-07 31.4 0.1 1.9e-07 30.6 0.1 1.4 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|57640769|ref|YP_183247.1| - 3.6e-07 29.8 0.1 5.6e-07 29.2 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain zf-FCS PF06467.9 gi|57640769|ref|YP_183247.1| - 5.7e-07 29.0 4.6 9.4e-07 28.3 3.2 1.4 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif GntR PF00392.16 gi|57640769|ref|YP_183247.1| - 8.9e-07 28.2 0.3 1.7e-06 27.3 0.2 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_DeoR PF08220.7 gi|57640769|ref|YP_183247.1| - 1.7e-06 27.4 0.0 3.2e-06 26.5 0.0 1.4 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_23 PF13384.1 gi|57640769|ref|YP_183247.1| - 3.1e-06 26.6 0.0 6e-06 25.7 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain HTH_Mga PF08280.6 gi|57640769|ref|YP_183247.1| - 3.1e-06 26.8 0.1 5e-06 26.1 0.0 1.3 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain TrmB PF01978.14 gi|57640769|ref|YP_183247.1| - 5.5e-06 25.9 0.1 1.3e-05 24.8 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|57640769|ref|YP_183247.1| - 5.6e-06 25.8 0.1 8.6e-06 25.2 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain Fe_dep_repress PF01325.14 gi|57640769|ref|YP_183247.1| - 6.1e-06 26.0 0.0 1.3e-05 25.0 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain MarR PF01047.17 gi|57640769|ref|YP_183247.1| - 6.6e-06 25.7 0.0 1.2e-05 24.9 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_30 PF13556.1 gi|57640769|ref|YP_183247.1| - 2.1e-05 24.0 0.0 3.8e-05 23.1 0.0 1.3 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain HTH_28 PF13518.1 gi|57640769|ref|YP_183247.1| - 3.1e-05 23.8 0.0 5.5e-05 23.0 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|57640769|ref|YP_183247.1| - 0.00015 21.5 0.0 0.00032 20.4 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_8 PF02954.14 gi|57640769|ref|YP_183247.1| - 0.00016 21.1 0.1 0.00033 20.1 0.1 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, Fis family HTH_41 PF14502.1 gi|57640769|ref|YP_183247.1| - 0.00031 20.3 0.0 0.00057 19.4 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_29 PF13551.1 gi|57640769|ref|YP_183247.1| - 0.00038 20.5 0.0 0.00057 20.0 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn helix Sigma70_r4_2 PF08281.7 gi|57640769|ref|YP_183247.1| - 0.00051 19.4 0.1 0.00087 18.7 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 Rrf2 PF02082.15 gi|57640769|ref|YP_183247.1| - 0.00056 19.9 0.0 0.0011 19.0 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator HTH_17 PF12728.2 gi|57640769|ref|YP_183247.1| - 0.00084 19.5 0.0 0.0019 18.4 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.1 gi|57640769|ref|YP_183247.1| - 0.00087 19.5 0.1 0.0016 18.7 0.1 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain Sigma70_r4 PF04545.11 gi|57640769|ref|YP_183247.1| - 0.00092 18.4 0.0 0.0017 17.6 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_10 PF04967.7 gi|57640769|ref|YP_183247.1| - 0.001 18.6 0.1 0.0019 17.7 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain FeoC PF09012.5 gi|57640769|ref|YP_183247.1| - 0.0012 18.5 0.3 0.0032 17.1 0.0 1.8 2 0 0 2 2 1 1 FeoC like transcriptional regulator HTH_36 PF13730.1 gi|57640769|ref|YP_183247.1| - 0.0013 18.8 0.0 0.0025 17.9 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_34 PF13601.1 gi|57640769|ref|YP_183247.1| - 0.0023 17.9 0.0 0.0056 16.6 0.0 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain Mga PF05043.8 gi|57640769|ref|YP_183247.1| - 0.0027 17.9 0.0 0.0066 16.6 0.0 1.6 1 0 0 1 1 1 1 Mga helix-turn-helix domain DUF2089 PF09862.4 gi|57640769|ref|YP_183247.1| - 0.0034 17.1 0.0 0.0073 16.0 0.0 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF2089) HTH_CodY PF08222.6 gi|57640769|ref|YP_183247.1| - 0.0037 16.5 0.1 0.0069 15.7 0.0 1.4 1 0 0 1 1 1 1 CodY helix-turn-helix domain EAP30 PF04157.11 gi|57640769|ref|YP_183247.1| - 0.004 16.3 0.1 0.0096 15.1 0.0 1.6 2 0 0 2 2 1 1 EAP30/Vps36 family HTH_3 PF01381.17 gi|57640769|ref|YP_183247.1| - 0.006 16.3 0.0 0.014 15.2 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix FaeA PF04703.7 gi|57640769|ref|YP_183247.1| - 0.006 16.7 0.0 0.014 15.5 0.0 1.6 1 0 0 1 1 1 1 FaeA-like protein HTH_1 PF00126.22 gi|57640769|ref|YP_183247.1| - 0.007 16.0 0.0 0.013 15.2 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family MerR PF00376.18 gi|57640769|ref|YP_183247.1| - 0.0098 15.4 0.1 0.019 14.4 0.0 1.5 1 0 0 1 1 1 1 MerR family regulatory protein AsnC_trans_reg PF01037.16 gi|57640769|ref|YP_183247.1| - 0.01 15.5 0.1 0.017 14.8 0.0 1.5 1 0 0 1 1 1 0 AsnC family DUF1081 PF06448.6 gi|57640769|ref|YP_183247.1| - 0.012 15.5 0.1 0.024 14.5 0.0 1.4 1 1 0 1 1 1 0 Domain of Unknown Function (DUF1081) DDRGK PF09756.4 gi|57640769|ref|YP_183247.1| - 0.012 15.0 0.0 0.027 13.8 0.0 1.5 1 0 0 1 1 1 0 DDRGK domain TetR_N PF00440.18 gi|57640769|ref|YP_183247.1| - 0.028 14.0 0.0 0.051 13.2 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family RPA_C PF08784.6 gi|57640769|ref|YP_183247.1| - 0.028 14.8 0.0 0.093 13.1 0.0 1.7 1 1 1 2 2 1 0 Replication protein A C terminal HTH_37 PF13744.1 gi|57640769|ref|YP_183247.1| - 0.032 14.0 0.0 0.068 12.9 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_26 PF13443.1 gi|57640769|ref|YP_183247.1| - 0.033 14.3 0.0 0.083 13.1 0.0 1.6 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain HTH_22 PF13309.1 gi|57640769|ref|YP_183247.1| - 0.035 13.8 0.0 0.11 12.2 0.0 1.9 1 0 0 1 1 1 0 HTH domain HTH_31 PF13560.1 gi|57640769|ref|YP_183247.1| - 0.043 14.0 0.1 0.074 13.2 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain PaaX PF07848.7 gi|57640769|ref|YP_183247.1| - 0.048 13.6 0.1 0.085 12.8 0.0 1.3 1 0 0 1 1 1 0 PaaX-like protein LIM PF00412.17 gi|57640769|ref|YP_183247.1| - 0.05 13.6 2.5 0.083 12.9 1.7 1.3 1 0 0 1 1 1 0 LIM domain LexA_DNA_bind PF01726.11 gi|57640769|ref|YP_183247.1| - 0.054 13.0 0.1 0.11 12.0 0.1 1.5 1 0 0 1 1 1 0 LexA DNA binding domain HxlR PF01638.12 gi|57640769|ref|YP_183247.1| - 0.065 12.8 0.3 0.17 11.5 0.1 1.9 2 0 0 2 2 1 0 HxlR-like helix-turn-helix MerR_1 PF13411.1 gi|57640769|ref|YP_183247.1| - 0.077 12.7 0.0 0.21 11.4 0.0 1.8 1 0 0 1 1 1 0 MerR HTH family regulatory protein YHS PF04945.8 gi|57640769|ref|YP_183247.1| - 0.083 12.7 1.9 0.16 11.8 1.3 1.5 1 1 0 1 1 1 0 YHS domain Sgf11 PF08209.6 gi|57640769|ref|YP_183247.1| - 0.092 12.0 2.7 3.8 6.8 0.3 2.4 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) ATPase-cat_bd PF12156.3 gi|57640769|ref|YP_183247.1| - 0.11 13.0 0.8 0.21 12.1 0.5 1.5 1 0 0 1 1 1 0 Putative metal-binding domain of cation transport ATPase HTH_19 PF12844.2 gi|57640769|ref|YP_183247.1| - 0.11 12.5 0.0 0.27 11.2 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_7 PF02796.10 gi|57640769|ref|YP_183247.1| - 0.13 12.1 0.0 0.58 10.0 0.0 2.1 2 0 0 2 2 1 0 Helix-turn-helix domain of resolvase HTH_Tnp_ISL3 PF13542.1 gi|57640769|ref|YP_183247.1| - 0.13 11.4 0.0 0.21 10.7 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_6 PF01418.12 gi|57640769|ref|YP_183247.1| - 0.13 11.9 0.0 0.27 10.9 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain, rpiR family Lar_restr_allev PF14354.1 gi|57640769|ref|YP_183247.1| - 0.19 12.0 1.3 0.34 11.2 0.9 1.3 1 0 0 1 1 1 0 Restriction alleviation protein Lar zf-C2H2_4 PF13894.1 gi|57640769|ref|YP_183247.1| - 2.7 8.5 5.5 21 5.7 0.1 2.5 2 0 0 2 2 2 0 C2H2-type zinc finger zf-C2H2_6 PF13912.1 gi|57640769|ref|YP_183247.1| - 2.8 7.9 5.5 18 5.4 0.9 2.3 2 0 0 2 2 2 0 C2H2-type zinc finger zf-H2C2_2 PF13465.1 gi|57640769|ref|YP_183247.1| - 3.3 8.1 13.1 3.2 8.2 0.7 2.3 2 0 0 2 2 2 0 Zinc-finger double domain ATP-grasp PF02222.17 gi|57640770|ref|YP_183248.1| - 1.5e-46 157.9 0.0 2.2e-46 157.3 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_4 PF13535.1 gi|57640770|ref|YP_183248.1| - 3.1e-19 69.4 0.1 5.2e-19 68.6 0.1 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_3 PF02655.9 gi|57640770|ref|YP_183248.1| - 3.5e-12 46.4 0.1 5.7e-12 45.7 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain RimK PF08443.6 gi|57640770|ref|YP_183248.1| - 5.4e-07 29.2 0.0 1.1e-06 28.2 0.0 1.5 1 0 0 1 1 1 1 RimK-like ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|57640770|ref|YP_183248.1| - 3.4e-06 26.0 0.0 0.0069 15.1 0.0 2.2 2 0 0 2 2 2 2 ATP-grasp in the biosynthetic pathway with Ter operon Dala_Dala_lig_C PF07478.8 gi|57640770|ref|YP_183248.1| - 3.5e-06 26.5 0.1 2.2e-05 23.9 0.1 2.1 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus XdhC_CoxI PF02625.11 gi|57640770|ref|YP_183248.1| - 0.0024 17.4 0.1 1.4 8.5 0.1 2.7 2 0 0 2 2 2 2 XdhC and CoxI family 2-Hacid_dh_C PF02826.14 gi|57640770|ref|YP_183248.1| - 0.0087 15.2 0.0 0.019 14.1 0.0 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain XdhC_C PF13478.1 gi|57640770|ref|YP_183248.1| - 0.11 12.8 0.0 0.3 11.3 0.0 1.9 1 0 0 1 1 1 0 XdhC Rossmann domain AIRC PF00731.15 gi|57640771|ref|YP_183249.1| - 1.9e-73 244.6 0.2 2.4e-73 244.3 0.2 1.1 1 0 0 1 1 1 1 AIR carboxylase PrpR_N PF06506.6 gi|57640771|ref|YP_183249.1| - 0.01 15.2 0.1 0.017 14.5 0.1 1.5 1 1 0 1 1 1 0 Propionate catabolism activator PPE PF00823.14 gi|57640771|ref|YP_183249.1| - 0.033 14.0 0.0 0.058 13.2 0.0 1.3 1 0 0 1 1 1 0 PPE family DUF3936 PF13072.1 gi|57640771|ref|YP_183249.1| - 0.038 13.4 0.7 0.08 12.4 0.5 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3936) Fe-ADH PF00465.14 gi|57640771|ref|YP_183249.1| - 0.048 12.3 0.4 0.085 11.4 0.1 1.5 2 0 0 2 2 2 0 Iron-containing alcohol dehydrogenase CoA_binding_2 PF13380.1 gi|57640771|ref|YP_183249.1| - 0.062 13.4 0.3 5.5 7.1 0.0 2.2 1 1 1 2 2 2 0 CoA binding domain CoA_binding PF02629.14 gi|57640771|ref|YP_183249.1| - 0.083 13.4 0.8 0.23 12.0 0.1 2.0 1 1 1 2 2 2 0 CoA binding domain Glutaredoxin PF00462.19 gi|57640771|ref|YP_183249.1| - 0.1 12.6 0.5 2.9 7.9 0.0 2.6 2 1 0 2 2 2 0 Glutaredoxin E1-E2_ATPase PF00122.15 gi|57640772|ref|YP_183250.1| - 1.3e-61 207.5 0.6 1.3e-61 207.5 0.4 1.6 2 0 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.21 gi|57640772|ref|YP_183250.1| - 2.9e-52 178.1 7.6 3.2e-52 178.0 4.2 1.9 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HMA PF00403.21 gi|57640772|ref|YP_183250.1| - 1.8e-32 111.2 10.4 4.5e-16 58.7 0.5 3.8 3 0 0 3 3 3 2 Heavy-metal-associated domain HAD PF12710.2 gi|57640772|ref|YP_183250.1| - 3.3e-20 73.0 0.0 8.5e-20 71.7 0.0 1.8 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|57640772|ref|YP_183250.1| - 2.4e-07 30.6 2.7 4.1e-05 23.2 0.4 2.9 1 1 2 3 3 3 2 haloacid dehalogenase-like hydrolase DUF1538 PF07556.6 gi|57640772|ref|YP_183250.1| - 0.0013 17.9 0.2 0.0013 17.9 0.2 2.3 2 1 0 2 2 2 1 Protein of unknown function (DUF1538) Hydrolase_6 PF13344.1 gi|57640772|ref|YP_183250.1| - 0.0025 17.6 0.1 0.14 12.0 0.0 3.4 2 1 1 3 3 3 1 Haloacid dehalogenase-like hydrolase DUF3213 PF11491.3 gi|57640772|ref|YP_183250.1| - 0.08 12.8 0.1 0.41 10.5 0.1 2.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3213) Thioredoxin PF00085.15 gi|57640773|ref|YP_183251.1| - 3.7e-12 45.8 0.0 4.5e-12 45.5 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|57640773|ref|YP_183251.1| - 2.1e-05 24.6 0.0 0.00023 21.2 0.0 2.0 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_3 PF13192.1 gi|57640773|ref|YP_183251.1| - 0.0001 22.0 0.0 0.00014 21.5 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin domain Thioredoxin_8 PF13905.1 gi|57640773|ref|YP_183251.1| - 0.0026 17.8 0.0 0.025 14.7 0.0 1.9 1 1 0 1 1 1 1 Thioredoxin-like Redoxin PF08534.5 gi|57640773|ref|YP_183251.1| - 0.0054 16.2 0.0 0.0081 15.7 0.0 1.4 1 1 0 1 1 1 1 Redoxin Glutaredoxin PF00462.19 gi|57640773|ref|YP_183251.1| - 0.0058 16.5 0.0 0.0075 16.2 0.0 1.4 1 0 0 1 1 1 1 Glutaredoxin HyaE PF07449.6 gi|57640773|ref|YP_183251.1| - 0.013 15.3 0.0 0.015 15.1 0.0 1.1 1 0 0 1 1 1 0 Hydrogenase-1 expression protein HyaE AhpC-TSA PF00578.16 gi|57640773|ref|YP_183251.1| - 0.035 13.7 0.0 0.045 13.4 0.0 1.3 1 1 0 1 1 1 0 AhpC/TSA family Nitroreductase PF00881.19 gi|57640774|ref|YP_183252.1| - 6.2e-35 120.4 0.0 6.9e-35 120.2 0.0 1.0 1 0 0 1 1 1 1 Nitroreductase family Nitroreductase PF00881.19 gi|57640775|ref|YP_183253.1| - 5e-34 117.5 0.0 6.1e-34 117.2 0.0 1.1 1 0 0 1 1 1 1 Nitroreductase family Cytochrom_B561 PF03188.11 gi|57640776|ref|YP_183254.1| - 0.00012 21.9 6.3 0.00014 21.6 4.3 1.0 1 0 0 1 1 1 1 Eukaryotic cytochrome b561 DUF4079 PF13301.1 gi|57640776|ref|YP_183254.1| - 0.0097 15.9 3.1 0.011 15.8 2.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF4079) COX15-CtaA PF02628.10 gi|57640776|ref|YP_183254.1| - 0.024 13.5 4.4 0.026 13.4 3.0 1.1 1 0 0 1 1 1 0 Cytochrome oxidase assembly protein DUF4405 PF14358.1 gi|57640776|ref|YP_183254.1| - 0.033 14.3 6.5 0.049 13.7 4.5 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4405) DUF2306 PF10067.4 gi|57640776|ref|YP_183254.1| - 0.082 13.0 5.2 0.098 12.7 3.6 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2306) DUF4293 PF14126.1 gi|57640776|ref|YP_183254.1| - 0.2 11.5 2.2 0.22 11.4 1.5 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4293) DUF2768 PF10966.3 gi|57640776|ref|YP_183254.1| - 0.46 10.6 7.7 0.64 10.2 5.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2768) SBF PF01758.11 gi|57640777|ref|YP_183255.1| - 1.3e-39 135.5 15.2 1.3e-39 135.5 10.5 2.6 3 0 0 3 3 3 1 Sodium Bile acid symporter family DUF4137 PF13593.1 gi|57640777|ref|YP_183255.1| - 4.3e-10 39.1 21.0 8.9e-10 38.1 14.6 1.5 1 1 0 1 1 1 1 SBF-like CPA transporter family (DUF4137) LMWPc PF01451.16 gi|57640778|ref|YP_183256.1| - 1.7e-31 109.3 0.0 2e-31 109.1 0.0 1.1 1 0 0 1 1 1 1 Low molecular weight phosphotyrosine protein phosphatase AFOR_C PF01314.13 gi|57640779|ref|YP_183257.1| - 5e-106 354.5 0.0 6.2e-106 354.2 0.0 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.10 gi|57640779|ref|YP_183257.1| - 3.8e-74 248.4 0.0 6.4e-74 247.6 0.0 1.4 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain Aldo_ket_red PF00248.16 gi|57640780|ref|YP_183258.1| - 1.6e-68 230.6 0.1 1.8e-68 230.4 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family AP2 PF00847.15 gi|57640780|ref|YP_183258.1| - 0.00063 19.8 0.3 0.0017 18.4 0.1 1.8 2 0 0 2 2 2 1 AP2 domain DUF2540 PF10802.3 gi|57640780|ref|YP_183258.1| - 0.065 12.9 0.2 2 8.1 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2540) CbiZ PF01955.13 gi|57640781|ref|YP_183259.1| - 6.1e-52 176.2 0.1 6.9e-52 176.0 0.1 1.0 1 0 0 1 1 1 1 Adenosylcobinamide amidohydrolase DUF2634 PF10934.3 gi|57640782|ref|YP_183260.1| - 0.11 12.2 0.6 0.13 12.0 0.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2634) PIN PF01850.16 gi|57640783|ref|YP_183261.1| - 0.025 14.8 0.1 0.046 14.0 0.0 1.5 1 1 0 1 1 1 0 PIN domain RHH_1 PF01402.16 gi|57640784|ref|YP_183262.1| - 0.0048 16.7 0.7 0.022 14.6 0.2 1.9 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family OrfB_IS605 PF01385.14 gi|57640785|ref|YP_183263.1| - 7.6e-70 234.8 1.9 1.1e-69 234.3 1.3 1.2 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|57640785|ref|YP_183263.1| - 4.7e-20 71.0 0.0 8.3e-20 70.2 0.0 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|57640785|ref|YP_183263.1| - 1.3e-05 24.3 0.0 3.3e-05 23.1 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain UPF0081 PF03652.10 gi|57640785|ref|YP_183263.1| - 0.027 14.5 0.0 0.074 13.1 0.0 1.7 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0081) Lipase_GDSL_2 PF13472.1 gi|57640785|ref|YP_183263.1| - 0.054 13.6 0.0 0.082 13.0 0.0 1.3 1 0 0 1 1 1 0 GDSL-like Lipase/Acylhydrolase family HtaA PF04213.8 gi|57640785|ref|YP_183263.1| - 0.097 12.9 0.0 0.18 12.0 0.0 1.4 1 0 0 1 1 1 0 Htaa zf-ribbon_3 PF13248.1 gi|57640785|ref|YP_183263.1| - 0.1 11.8 0.4 0.2 10.9 0.3 1.5 1 0 0 1 1 1 0 zinc-ribbon domain PIN PF01850.16 gi|57640786|ref|YP_183264.1| - 0.00078 19.7 0.0 0.00087 19.6 0.0 1.1 1 0 0 1 1 1 1 PIN domain PIN_4 PF13638.1 gi|57640786|ref|YP_183264.1| - 0.096 12.7 0.0 0.096 12.7 0.0 1.1 1 0 0 1 1 1 0 PIN domain DBI_PRT PF02277.12 gi|57640787|ref|YP_183265.1| - 4.6e-24 85.1 0.1 6.6e-24 84.6 0.0 1.1 1 0 0 1 1 1 1 Phosphoribosyltransferase Radical_SAM PF04055.16 gi|57640788|ref|YP_183266.1| - 4e-20 72.6 0.2 1.1e-19 71.2 0.0 1.7 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|57640788|ref|YP_183266.1| - 9.1e-08 32.1 0.0 1.8e-07 31.1 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|57640788|ref|YP_183266.1| - 6.3e-07 29.5 0.0 1e-06 28.9 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain HAD_2 PF13419.1 gi|57640788|ref|YP_183266.1| - 0.002 18.4 0.0 0.0026 17.9 0.0 1.3 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase DUF2666 PF10869.3 gi|57640788|ref|YP_183266.1| - 0.04 13.9 0.0 0.086 12.8 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2666) Hydrolase PF00702.21 gi|57640788|ref|YP_183266.1| - 0.068 13.5 0.0 0.093 13.1 0.0 1.2 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase GATase_3 PF07685.9 gi|57640789|ref|YP_183267.1| - 5.4e-43 146.3 0.0 8.3e-43 145.7 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.18 gi|57640789|ref|YP_183267.1| - 3.5e-31 108.1 0.0 5.1e-31 107.6 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.1 gi|57640789|ref|YP_183267.1| - 9.4e-19 67.7 0.0 2.1e-18 66.6 0.0 1.6 1 1 0 1 1 1 1 AAA domain MobB PF03205.9 gi|57640789|ref|YP_183267.1| - 0.0031 17.2 0.0 2.2 7.9 0.0 3.0 3 0 0 3 3 3 2 Molybdopterin guanine dinucleotide synthesis protein B GATase PF00117.23 gi|57640789|ref|YP_183267.1| - 0.0089 15.5 0.0 0.028 13.8 0.0 1.8 2 0 0 2 2 2 1 Glutamine amidotransferase class-I GATase_5 PF13507.1 gi|57640789|ref|YP_183267.1| - 0.034 13.0 0.0 0.056 12.3 0.0 1.3 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain DUF1792 PF08759.6 gi|57640789|ref|YP_183267.1| - 0.045 13.3 0.0 0.075 12.6 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1792) DUF4268 PF14088.1 gi|57640790|ref|YP_183268.1| - 1.6e-24 86.1 0.2 1.6e-24 86.1 0.1 2.2 3 0 0 3 3 3 1 Domain of unknown function (DUF4268) DUF91 PF01939.11 gi|57640790|ref|YP_183268.1| - 0.0021 17.2 0.1 0.0034 16.5 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function DUF91 HSDR_N_2 PF13588.1 gi|57640790|ref|YP_183268.1| - 0.0077 16.0 0.4 0.051 13.3 0.1 2.3 2 0 0 2 2 2 1 Type I restriction enzyme R protein N terminus (HSDR_N) DUF4635 PF15466.1 gi|57640790|ref|YP_183268.1| - 0.37 10.0 3.1 0.7 9.1 0.1 2.6 3 0 0 3 3 3 0 Domain of unknown function (DUF4635) NTP_transf_3 PF12804.2 gi|57640791|ref|YP_183269.1| - 5.5e-14 52.5 0.0 6.8e-14 52.2 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain CTP_transf_3 PF02348.14 gi|57640791|ref|YP_183269.1| - 0.00038 20.1 0.0 0.00059 19.5 0.0 1.4 1 0 0 1 1 1 1 Cytidylyltransferase IspD PF01128.14 gi|57640791|ref|YP_183269.1| - 0.016 14.7 0.0 0.12 11.8 0.0 1.9 2 0 0 2 2 2 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CobS PF02654.10 gi|57640792|ref|YP_183270.1| - 4.4e-72 242.4 7.5 5e-72 242.2 5.2 1.0 1 0 0 1 1 1 1 Cobalamin-5-phosphate synthase PgpA PF04608.8 gi|57640793|ref|YP_183271.1| - 7e-09 35.6 0.0 8.5e-09 35.3 0.0 1.2 1 0 0 1 1 1 1 Phosphatidylglycerophosphatase A PIN_2 PF10130.4 gi|57640794|ref|YP_183272.1| - 8.8e-19 67.8 0.0 9.4e-19 67.7 0.0 1.0 1 0 0 1 1 1 1 PIN domain PIN_3 PF13470.1 gi|57640794|ref|YP_183272.1| - 5e-07 30.4 0.0 6.4e-07 30.0 0.0 1.1 1 0 0 1 1 1 1 PIN domain PIN PF01850.16 gi|57640794|ref|YP_183272.1| - 0.00026 21.3 0.0 0.00034 20.9 0.0 1.1 1 0 0 1 1 1 1 PIN domain CCDC50_N PF15295.1 gi|57640795|ref|YP_183273.1| - 0.067 13.1 4.5 0.078 12.8 3.1 1.1 1 0 0 1 1 1 0 Coiled-coil domain-containing protein 50 N-terminus Rabaptin PF03528.10 gi|57640795|ref|YP_183273.1| - 0.11 12.4 2.5 0.13 12.2 1.7 1.1 1 0 0 1 1 1 0 Rabaptin AAA_23 PF13476.1 gi|57640795|ref|YP_183273.1| - 0.79 10.0 4.3 0.85 9.9 3.0 1.0 1 0 0 1 1 1 0 AAA domain DUF104 PF01954.11 gi|57640795|ref|YP_183273.1| - 2.5 8.1 7.0 1.5 8.8 3.7 1.5 1 1 0 1 1 1 0 Protein of unknown function DUF104 ATP_bind_4 PF01902.12 gi|57640796|ref|YP_183274.1| - 4.5e-56 189.6 0.0 5e-56 189.4 0.0 1.0 1 0 0 1 1 1 1 ATP-binding region Cas_CT1975 PF09344.5 gi|57640796|ref|YP_183274.1| - 0.055 12.8 0.0 0.077 12.3 0.0 1.2 1 0 0 1 1 1 0 CT1975-like protein CoA_binding PF02629.14 gi|57640796|ref|YP_183274.1| - 0.066 13.7 0.0 0.19 12.2 0.0 1.7 2 0 0 2 2 2 0 CoA binding domain Lar_restr_allev PF14354.1 gi|57640797|ref|YP_183275.1| - 0.00084 19.5 0.2 0.0014 18.9 0.1 1.4 1 1 0 1 1 1 1 Restriction alleviation protein Lar zf-ribbon_3 PF13248.1 gi|57640797|ref|YP_183275.1| - 0.0035 16.4 0.5 1.2 8.4 0.1 2.2 2 0 0 2 2 2 2 zinc-ribbon domain zf-TFIIB PF13453.1 gi|57640797|ref|YP_183275.1| - 0.0053 15.9 0.1 0.12 11.5 0.0 2.3 2 0 0 2 2 2 1 Transcription factor zinc-finger zf-ISL3 PF14690.1 gi|57640797|ref|YP_183275.1| - 0.033 14.2 0.4 4.9 7.2 0.2 2.2 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 TF_Zn_Ribbon PF08271.7 gi|57640797|ref|YP_183275.1| - 0.058 12.7 1.3 3.6 6.9 0.1 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding A2L_zn_ribbon PF08792.5 gi|57640797|ref|YP_183275.1| - 0.11 11.9 1.3 4.5 6.8 0.0 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain YhfH PF14149.1 gi|57640797|ref|YP_183275.1| - 0.27 11.0 1.8 7.5 6.4 0.8 2.4 2 0 0 2 2 2 0 YhfH-like protein Zn_ribbon_recom PF13408.1 gi|57640797|ref|YP_183275.1| - 0.39 11.0 2.3 0.66 10.2 1.6 1.5 1 1 0 1 1 1 0 Recombinase zinc beta ribbon domain UPF0547 PF10571.4 gi|57640797|ref|YP_183275.1| - 0.69 9.6 2.5 4.2 7.1 0.2 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-IS66 PF13005.2 gi|57640797|ref|YP_183275.1| - 3.3 7.7 6.4 1.1 9.3 0.3 2.4 2 1 0 2 2 2 0 zinc-finger binding domain of transposase IS66 CobD_Cbib PF03186.8 gi|57640798|ref|YP_183276.1| - 1.9e-86 289.8 0.0 2.5e-86 289.3 0.0 1.1 1 0 0 1 1 1 1 CobD/Cbib protein VPS28 PF03997.7 gi|57640798|ref|YP_183276.1| - 0.0035 16.9 0.1 0.0052 16.4 0.0 1.1 1 0 0 1 1 1 1 VPS28 protein 7tm_7 PF08395.7 gi|57640798|ref|YP_183276.1| - 0.019 14.0 4.3 0.026 13.5 1.3 2.1 2 0 0 2 2 2 0 7tm Chemosensory receptor DUF3816 PF12822.2 gi|57640798|ref|YP_183276.1| - 0.045 13.6 4.2 0.028 14.3 1.2 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF3816) Aminotran_1_2 PF00155.16 gi|57640799|ref|YP_183277.1| - 7.5e-34 117.2 0.0 9.2e-34 116.9 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|57640799|ref|YP_183277.1| - 0.015 14.4 0.0 0.021 13.9 0.0 1.1 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family Peripla_BP_2 PF01497.13 gi|57640800|ref|YP_183278.1| - 3.9e-44 150.5 0.0 5.6e-44 150.0 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein Alpha_GJ PF03229.8 gi|57640800|ref|YP_183278.1| - 0.48 10.7 5.5 1.4 9.2 2.4 2.0 2 0 0 2 2 2 0 Alphavirus glycoprotein J Myco_19_kDa PF05481.7 gi|57640800|ref|YP_183278.1| - 1.7 8.4 5.4 3.4 7.4 3.7 1.6 1 1 0 1 1 1 0 Mycobacterium 19 kDa lipoprotein antigen SSP160 PF06933.6 gi|57640800|ref|YP_183278.1| - 2.6 5.9 8.5 3.8 5.3 5.9 1.2 1 0 0 1 1 1 0 Special lobe-specific silk protein SSP160 Metalloenzyme PF01676.13 gi|57640801|ref|YP_183279.1| - 3e-68 229.9 0.0 4e-68 229.5 0.0 1.1 1 0 0 1 1 1 1 Metalloenzyme superfamily PhosphMutase PF10143.4 gi|57640801|ref|YP_183279.1| - 2.4e-57 193.3 0.0 4.1e-57 192.5 0.0 1.4 1 0 0 1 1 1 1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Phosphodiest PF01663.17 gi|57640801|ref|YP_183279.1| - 7.3e-08 32.1 0.3 3.3e-06 26.6 0.1 2.2 2 1 0 2 2 2 1 Type I phosphodiesterase / nucleotide pyrophosphatase Sulfatase PF00884.18 gi|57640801|ref|YP_183279.1| - 0.00019 20.7 0.0 0.19 10.8 0.0 2.3 2 0 0 2 2 2 2 Sulfatase Na_Ca_ex PF01699.19 gi|57640802|ref|YP_183280.1| - 3.2e-42 143.4 27.7 1e-21 76.9 6.6 2.2 2 0 0 2 2 2 2 Sodium/calcium exchanger protein MttA_Hcf106 PF02416.11 gi|57640802|ref|YP_183280.1| - 0.4 9.8 4.5 0.3 10.2 0.4 2.9 2 1 0 2 2 2 0 mttA/Hcf106 family HIT PF01230.18 gi|57640803|ref|YP_183281.1| - 2.5e-15 56.7 0.0 3.8e-15 56.1 0.0 1.3 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.3 gi|57640803|ref|YP_183281.1| - 8.9e-09 35.5 0.0 1.5e-08 34.8 0.0 1.3 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.10 gi|57640803|ref|YP_183281.1| - 0.00011 21.8 0.0 0.00016 21.3 0.0 1.3 1 0 0 1 1 1 1 Protein similar to CwfJ C-terminus 1 DUF3211 PF11485.3 gi|57640804|ref|YP_183282.1| - 0.0013 18.7 0.0 0.0019 18.2 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF3211) Thy1 PF02511.10 gi|57640805|ref|YP_183283.1| - 7.8e-66 221.0 0.4 9.4e-66 220.7 0.3 1.0 1 0 0 1 1 1 1 Thymidylate synthase complementing protein OTCace PF00185.19 gi|57640806|ref|YP_183284.1| - 6.2e-63 211.4 0.1 8.7e-63 210.9 0.1 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain OTCace_N PF02729.16 gi|57640806|ref|YP_183284.1| - 2.3e-50 169.9 0.0 4.6e-50 168.9 0.0 1.5 2 0 0 2 2 2 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Methyltransf_18 PF12847.2 gi|57640806|ref|YP_183284.1| - 0.096 13.2 0.0 0.24 11.9 0.0 1.7 1 0 0 1 1 1 0 Methyltransferase domain Nol1_Nop2_Fmu PF01189.12 gi|57640807|ref|YP_183285.1| - 7.9e-61 205.9 0.0 9.2e-61 205.6 0.0 1.0 1 0 0 1 1 1 1 NOL1/NOP2/sun family Methyltransf_31 PF13847.1 gi|57640807|ref|YP_183285.1| - 2.8e-08 33.4 0.0 4e-08 33.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|57640807|ref|YP_183285.1| - 8.3e-06 25.8 0.0 1.5e-05 24.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|57640807|ref|YP_183285.1| - 2.8e-05 24.6 0.0 6e-05 23.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain FtsJ PF01728.14 gi|57640807|ref|YP_183285.1| - 3.4e-05 23.8 0.0 4.9e-05 23.3 0.0 1.3 1 0 0 1 1 1 1 FtsJ-like methyltransferase POR PF01558.13 gi|57640807|ref|YP_183285.1| - 0.068 13.0 0.0 0.14 12.0 0.0 1.5 1 0 0 1 1 1 0 Pyruvate ferredoxin/flavodoxin oxidoreductase MTS PF05175.9 gi|57640807|ref|YP_183285.1| - 0.11 11.8 0.0 0.17 11.2 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain Metallophos_2 PF12850.2 gi|57640809|ref|YP_183287.1| - 7.4e-05 22.6 0.0 0.0001 22.1 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Saccharop_dh PF03435.13 gi|57640810|ref|YP_183288.1| - 3.7e-64 217.1 0.0 4.1e-64 216.9 0.0 1.0 1 0 0 1 1 1 1 Saccharopine dehydrogenase NAD_binding_10 PF13460.1 gi|57640810|ref|YP_183288.1| - 0.00094 19.2 0.0 0.0023 17.9 0.0 1.7 2 0 0 2 2 2 1 NADH(P)-binding Shikimate_DH PF01488.15 gi|57640810|ref|YP_183288.1| - 0.0011 19.1 0.0 0.0016 18.5 0.0 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase TrkA_N PF02254.13 gi|57640810|ref|YP_183288.1| - 0.0059 16.6 0.1 0.011 15.6 0.0 1.6 1 0 0 1 1 1 1 TrkA-N domain CoA_binding PF02629.14 gi|57640810|ref|YP_183288.1| - 0.0096 16.4 0.1 0.019 15.4 0.1 1.5 1 0 0 1 1 1 1 CoA binding domain DapB_N PF01113.15 gi|57640810|ref|YP_183288.1| - 0.012 15.5 0.1 0.021 14.7 0.1 1.5 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus GFO_IDH_MocA PF01408.17 gi|57640810|ref|YP_183288.1| - 0.014 15.9 0.0 0.021 15.3 0.0 1.3 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold Semialdhyde_dh PF01118.19 gi|57640810|ref|YP_183288.1| - 0.028 14.7 0.1 0.047 13.9 0.1 1.3 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|57640810|ref|YP_183288.1| - 0.032 13.3 0.0 0.05 12.7 0.0 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GARS_N PF02844.10 gi|57640810|ref|YP_183288.1| - 0.1 13.0 0.0 0.26 11.7 0.0 1.7 1 0 0 1 1 1 0 Phosphoribosylglycinamide synthetase, N domain EMG1 PF03587.9 gi|57640811|ref|YP_183289.1| - 3e-55 186.6 0.0 3.4e-55 186.4 0.0 1.0 1 0 0 1 1 1 1 EMG1/NEP1 methyltransferase eIF-5a PF01287.15 gi|57640813|ref|YP_183291.1| - 6.4e-15 54.8 0.7 9.9e-15 54.2 0.5 1.3 1 0 0 1 1 1 1 Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold EFP_N PF08207.7 gi|57640813|ref|YP_183291.1| - 2.1e-05 24.2 0.0 4.5e-05 23.2 0.0 1.7 1 0 0 1 1 1 1 Elongation factor P (EF-P) KOW-like domain KOW PF00467.24 gi|57640813|ref|YP_183291.1| - 0.012 15.2 0.1 0.09 12.5 0.0 2.4 2 0 0 2 2 2 0 KOW motif EFP PF01132.15 gi|57640813|ref|YP_183291.1| - 0.089 12.4 0.2 0.17 11.6 0.1 1.5 1 0 0 1 1 1 0 Elongation factor P (EF-P) OB domain Usp PF00582.21 gi|57640814|ref|YP_183292.1| - 6.9e-05 23.0 0.2 9.1e-05 22.6 0.1 1.2 1 0 0 1 1 1 1 Universal stress protein family CitMHS PF03600.11 gi|57640815|ref|YP_183293.1| - 3.6e-58 196.8 20.9 3.6e-58 196.8 14.5 2.0 1 1 1 2 2 2 2 Citrate transporter ArsB PF02040.10 gi|57640815|ref|YP_183293.1| - 2e-29 102.8 27.4 2.3e-29 102.6 19.0 1.0 1 0 0 1 1 1 1 Arsenical pump membrane protein Na_sulph_symp PF00939.14 gi|57640815|ref|YP_183293.1| - 8.7e-29 100.7 29.0 1.1e-15 57.5 5.6 2.0 1 1 1 2 2 2 2 Sodium:sulfate symporter transmembrane region NhaB PF06450.7 gi|57640815|ref|YP_183293.1| - 7e-10 38.1 19.2 1.1e-09 37.4 4.2 2.7 2 1 0 2 2 2 2 Bacterial Na+/H+ antiporter B (NhaB) DctM PF06808.7 gi|57640815|ref|YP_183293.1| - 0.0001 20.9 27.9 0.0064 15.0 12.2 2.3 1 1 1 2 2 2 2 DctM-like transporters Usp PF00582.21 gi|57640816|ref|YP_183294.1| - 6.9e-23 81.3 0.5 7.8e-23 81.2 0.4 1.0 1 0 0 1 1 1 1 Universal stress protein family Arginase PF00491.16 gi|57640817|ref|YP_183295.1| - 2e-67 227.4 0.0 2.4e-67 227.1 0.0 1.0 1 0 0 1 1 1 1 Arginase family Radical_SAM PF04055.16 gi|57640817|ref|YP_183295.1| - 0.02 15.0 0.1 0.049 13.8 0.1 1.5 1 1 0 1 1 1 0 Radical SAM superfamily CBS PF00571.23 gi|57640818|ref|YP_183296.1| - 3.1e-14 52.4 6.6 6.7e-09 35.4 0.2 2.3 2 0 0 2 2 2 2 CBS domain NYN PF01936.13 gi|57640818|ref|YP_183296.1| - 0.12 12.6 0.0 0.19 12.0 0.0 1.3 1 0 0 1 1 1 0 NYN domain Na_H_Exchanger PF00999.16 gi|57640819|ref|YP_183297.1| - 1.8e-51 174.8 41.9 2.4e-51 174.4 29.0 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family Voltage_CLC PF00654.15 gi|57640821|ref|YP_183299.1| - 1.7e-88 297.0 51.5 3.5e-88 295.9 30.0 2.0 2 0 0 2 2 2 2 Voltage gated chloride channel CBS PF00571.23 gi|57640821|ref|YP_183299.1| - 4.3e-23 80.8 0.3 2.2e-13 49.7 0.1 2.5 2 0 0 2 2 2 2 CBS domain DUF1146 PF06612.6 gi|57640821|ref|YP_183299.1| - 0.018 14.9 0.2 13 5.8 0.2 3.9 3 0 0 3 3 3 0 Protein of unknown function (DUF1146) PHP_C PF13263.1 gi|57640822|ref|YP_183300.1| - 8e-06 25.2 0.0 2.3e-05 23.8 0.0 1.7 1 0 0 1 1 1 1 PHP-associated PHP PF02811.14 gi|57640822|ref|YP_183300.1| - 0.00028 20.7 0.5 0.0011 18.8 0.1 1.9 2 0 0 2 2 2 1 PHP domain NAD_binding_4 PF07993.7 gi|57640822|ref|YP_183300.1| - 0.055 12.3 0.0 0.086 11.7 0.0 1.4 1 0 0 1 1 1 0 Male sterility protein HypA PF01155.14 gi|57640822|ref|YP_183300.1| - 0.063 12.9 0.7 0.2 11.3 0.0 2.1 2 0 0 2 2 2 0 Hydrogenase expression/synthesis hypA family zinc_ribbon_4 PF13717.1 gi|57640822|ref|YP_183300.1| - 0.08 12.6 1.4 0.2 11.3 1.0 1.7 1 0 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|57640822|ref|YP_183300.1| - 0.085 12.4 1.5 0.2 11.2 1.0 1.7 1 0 0 1 1 1 0 zinc-ribbon domain zf-C3HC4_3 PF13920.1 gi|57640822|ref|YP_183300.1| - 0.16 11.6 0.6 0.28 10.9 0.4 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) Antitoxin-MazE PF04014.13 gi|57640823|ref|YP_183301.1| - 2.8e-11 42.8 0.5 6e-11 41.8 0.4 1.6 1 0 0 1 1 1 1 Antidote-toxin recognition MazE DUF3606 PF12244.3 gi|57640823|ref|YP_183301.1| - 0.0063 16.1 0.6 0.013 15.0 0.4 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF3606) DUF746 PF05344.6 gi|57640823|ref|YP_183301.1| - 0.035 13.6 0.0 0.057 12.9 0.0 1.3 1 0 0 1 1 1 0 Domain of Unknown Function (DUF746) DUF3791 PF12668.2 gi|57640823|ref|YP_183301.1| - 0.056 13.0 0.1 20 4.9 0.0 2.8 2 1 1 3 3 3 0 Protein of unknown function (DUF3791) RuvA_C PF07499.8 gi|57640823|ref|YP_183301.1| - 0.076 13.1 0.3 1.4 9.0 0.1 2.2 2 0 0 2 2 2 0 RuvA, C-terminal domain PIN_3 PF13470.1 gi|57640824|ref|YP_183302.1| - 8.5e-17 61.9 0.0 1e-16 61.6 0.0 1.1 1 0 0 1 1 1 1 PIN domain PIN PF01850.16 gi|57640824|ref|YP_183302.1| - 1.3e-05 25.4 0.1 6.3e-05 23.2 0.0 1.8 1 1 0 1 1 1 1 PIN domain PIN_2 PF10130.4 gi|57640824|ref|YP_183302.1| - 0.037 14.0 0.0 0.2 11.6 0.0 2.0 1 1 0 1 1 1 0 PIN domain Endotoxin_N PF03945.9 gi|57640824|ref|YP_183302.1| - 0.092 12.1 0.0 0.12 11.7 0.0 1.1 1 0 0 1 1 1 0 delta endotoxin, N-terminal domain AIRS PF00586.19 gi|57640825|ref|YP_183303.1| - 1.1e-20 73.6 0.1 1.8e-20 72.9 0.0 1.4 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain AIRS_C PF02769.17 gi|57640825|ref|YP_183303.1| - 1.1e-10 41.7 0.0 1.5e-10 41.2 0.0 1.2 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain Glycos_transf_1 PF00534.15 gi|57640826|ref|YP_183304.1| - 9.7e-43 145.5 0.0 1.4e-42 144.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|57640826|ref|YP_183304.1| - 5.2e-23 81.6 0.1 8.3e-23 80.9 0.1 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.1 gi|57640826|ref|YP_183304.1| - 9.7e-18 64.6 0.0 1.6e-17 63.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|57640826|ref|YP_183304.1| - 3.9e-16 59.5 0.0 7.7e-16 58.6 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.1 gi|57640826|ref|YP_183304.1| - 9.2e-09 35.2 0.0 1.7e-08 34.4 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.1 gi|57640826|ref|YP_183304.1| - 1e-08 35.3 0.0 6.6e-08 32.7 0.0 2.1 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_5 PF08323.6 gi|57640826|ref|YP_183304.1| - 2.4e-07 30.5 0.0 0.00092 18.7 0.0 2.2 1 1 0 2 2 2 2 Starch synthase catalytic domain PIGA PF08288.7 gi|57640826|ref|YP_183304.1| - 0.00024 21.3 0.0 0.00059 20.1 0.0 1.7 1 0 0 1 1 1 1 PIGA (GPI anchor biosynthesis) DUF4217 PF13959.1 gi|57640826|ref|YP_183304.1| - 0.12 11.9 0.0 0.28 10.7 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4217) Polysacc_deac_1 PF01522.16 gi|57640827|ref|YP_183305.1| - 1.5e-15 56.8 0.0 2.2e-15 56.3 0.0 1.2 1 0 0 1 1 1 1 Polysaccharide deacetylase DUF3473 PF11959.3 gi|57640827|ref|YP_183305.1| - 0.011 15.1 1.2 0.31 10.4 0.8 2.3 1 1 0 1 1 1 0 Domain of unknown function (DUF3473) Radical_SAM PF04055.16 gi|57640828|ref|YP_183306.1| - 2.8e-20 73.1 0.1 2.8e-20 73.1 0.1 2.8 4 0 0 4 4 4 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|57640828|ref|YP_183306.1| - 4.8e-10 39.6 0.1 1.2e-09 38.4 0.1 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|57640828|ref|YP_183306.1| - 0.025 14.6 0.0 0.025 14.6 0.0 1.7 2 0 0 2 2 2 0 4Fe-4S single cluster domain DiS_P_DiS PF06750.8 gi|57640828|ref|YP_183306.1| - 0.075 12.8 0.7 0.46 10.3 0.0 2.3 2 0 0 2 2 2 0 Bacterial Peptidase A24 N-terminal domain DBD_Tnp_Hermes PF10683.4 gi|57640828|ref|YP_183306.1| - 0.1 12.0 0.0 0.2 11.1 0.0 1.5 1 0 0 1 1 1 0 Hermes transposase DNA-binding domain DZR PF12773.2 gi|57640828|ref|YP_183306.1| - 0.1 12.4 0.1 0.1 12.4 0.0 2.5 3 0 0 3 3 3 0 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|57640828|ref|YP_183306.1| - 2.7 7.3 8.7 7.7 5.8 0.4 3.1 2 1 1 3 3 3 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|57640828|ref|YP_183306.1| - 7.8 6.1 9.1 14 5.3 3.1 2.9 2 1 0 2 2 2 0 zinc-ribbon domain ComZ PF10815.3 gi|57640829|ref|YP_183307.1| - 0.0051 16.5 0.0 1 9.1 0.0 2.5 2 0 0 2 2 2 2 ComZ S_layer_N PF05123.7 gi|57640830|ref|YP_183308.1| - 1.7e-87 293.7 17.3 1.7e-87 293.7 12.0 2.1 2 0 0 2 2 2 1 S-layer like family, N-terminal region S_layer_C PF05124.7 gi|57640830|ref|YP_183308.1| - 2.1e-62 210.6 3.7 2.1e-62 210.6 2.6 2.7 2 1 1 3 3 3 1 S-layer like family, C-terminal region BMC PF00936.14 gi|57640830|ref|YP_183308.1| - 9.6 5.9 9.3 0.16 11.6 0.1 2.8 4 0 0 4 4 4 0 BMC domain Radical_SAM PF04055.16 gi|57640832|ref|YP_183310.1| - 1.6e-29 103.2 0.1 1.4e-28 100.1 0.0 2.4 2 1 0 2 2 2 1 Radical SAM superfamily HHH_3 PF12836.2 gi|57640832|ref|YP_183310.1| - 1.4e-07 31.3 0.0 5.9e-07 29.3 0.0 2.1 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|57640832|ref|YP_183310.1| - 0.0062 16.6 0.1 0.062 13.4 0.0 2.6 2 0 0 2 2 2 1 Helix-hairpin-helix domain PsbU PF06514.6 gi|57640832|ref|YP_183310.1| - 0.053 13.3 0.6 0.2 11.5 0.0 2.3 3 0 0 3 3 3 0 Photosystem II 12 kDa extrinsic protein (PsbU) HHH PF00633.18 gi|57640832|ref|YP_183310.1| - 0.1 12.3 0.1 0.35 10.6 0.0 2.0 1 0 0 1 1 1 0 Helix-hairpin-helix motif DUF2383 PF09537.5 gi|57640833|ref|YP_183311.1| - 7.2e-05 23.0 0.8 0.0031 17.7 0.1 2.4 2 0 0 2 2 2 1 Domain of unknown function (DUF2383) Ferritin PF00210.19 gi|57640833|ref|YP_183311.1| - 0.011 15.4 0.1 0.018 14.8 0.1 1.3 1 0 0 1 1 1 0 Ferritin-like domain UvrD_C PF13361.1 gi|57640833|ref|YP_183311.1| - 0.034 13.5 1.7 0.043 13.2 1.2 1.3 1 1 0 1 1 1 0 UvrD-like helicase C-terminal domain Dimer_Tnp_hAT PF05699.9 gi|57640833|ref|YP_183311.1| - 0.049 13.2 3.2 1.7 8.2 0.1 2.4 2 0 0 2 2 2 0 hAT family C-terminal dimerisation region DUF3231 PF11553.3 gi|57640833|ref|YP_183311.1| - 0.05 13.0 0.1 0.089 12.2 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3231) GAT PF03127.9 gi|57640833|ref|YP_183311.1| - 0.061 13.3 2.2 0.099 12.6 0.5 2.3 2 1 0 2 2 2 0 GAT domain Spidroin_MaSp PF11260.3 gi|57640833|ref|YP_183311.1| - 0.072 13.1 0.4 15 5.7 0.1 2.4 2 0 0 2 2 2 0 Major ampullate spidroin 1 and 2 Rubrerythrin PF02915.12 gi|57640833|ref|YP_183311.1| - 0.097 12.9 0.4 0.4 10.9 0.2 2.1 1 1 1 2 2 2 0 Rubrerythrin Sp100 PF03172.8 gi|57640833|ref|YP_183311.1| - 0.11 12.5 0.1 0.22 11.5 0.0 1.6 1 0 0 1 1 1 0 Sp100 domain HEPN PF05168.9 gi|57640833|ref|YP_183311.1| - 0.13 12.1 1.6 0.35 10.7 0.2 2.2 2 1 0 2 2 2 0 HEPN domain RrnaAD PF00398.15 gi|57640834|ref|YP_183312.1| - 5.7e-55 186.1 0.0 6.5e-55 185.9 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase MTS PF05175.9 gi|57640834|ref|YP_183312.1| - 0.00018 20.8 0.0 0.0003 20.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.1 gi|57640834|ref|YP_183312.1| - 0.00019 21.0 0.0 0.0005 19.6 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|57640834|ref|YP_183312.1| - 0.0065 16.9 0.0 0.02 15.3 0.0 1.8 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|57640834|ref|YP_183312.1| - 0.049 13.3 0.0 0.1 12.3 0.0 1.6 2 0 0 2 2 2 0 Methyltransferase domain DUF1241 PF06840.6 gi|57640834|ref|YP_183312.1| - 0.091 12.0 0.0 0.17 11.1 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1241) DUF655 PF04919.7 gi|57640835|ref|YP_183313.1| - 8.3e-76 253.7 0.3 9.9e-76 253.4 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF655) HHH_6 PF14579.1 gi|57640835|ref|YP_183313.1| - 3.9e-06 26.8 0.0 1e-05 25.4 0.0 1.7 1 1 1 2 2 2 1 Helix-hairpin-helix motif HHH_3 PF12836.2 gi|57640835|ref|YP_183313.1| - 5.4e-05 23.0 0.1 0.0002 21.2 0.0 2.1 2 1 0 2 2 2 1 Helix-hairpin-helix motif ParBc PF02195.13 gi|57640835|ref|YP_183313.1| - 0.044 13.9 0.0 0.098 12.7 0.0 1.6 1 0 0 1 1 1 0 ParB-like nuclease domain DGCR6 PF07324.6 gi|57640835|ref|YP_183313.1| - 0.05 13.0 0.2 1.3 8.4 0.0 2.1 2 0 0 2 2 2 0 DiGeorge syndrome critical region 6 (DGCR6) protein RNA_pol_Rpb4 PF03874.11 gi|57640836|ref|YP_183314.1| - 1.4e-10 41.1 0.4 1.7e-10 40.9 0.3 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb4 Ribosomal_L21e PF01157.13 gi|57640837|ref|YP_183315.1| - 2e-29 101.3 1.6 2.2e-29 101.1 1.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L21e THUMP PF02926.12 gi|57640838|ref|YP_183316.1| - 3.3e-13 49.7 0.7 3.3e-13 49.7 0.5 2.3 3 0 0 3 3 3 1 THUMP domain Kinase-PPPase PF03618.9 gi|57640838|ref|YP_183316.1| - 0.047 13.1 0.0 0.088 12.2 0.0 1.4 1 0 0 1 1 1 0 Kinase/pyrophosphorylase UPF0547 PF10571.4 gi|57640839|ref|YP_183317.1| - 0.0017 17.9 2.4 0.14 11.8 0.1 2.2 2 0 0 2 2 2 2 Uncharacterised protein family UPF0547 HypA PF01155.14 gi|57640839|ref|YP_183317.1| - 0.0073 15.9 0.1 0.0086 15.7 0.0 1.2 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family HTH_5 PF01022.15 gi|57640839|ref|YP_183317.1| - 0.018 14.6 0.0 0.042 13.5 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family DZR PF12773.2 gi|57640839|ref|YP_183317.1| - 0.024 14.4 0.3 0.041 13.7 0.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon zf-AN1 PF01428.11 gi|57640839|ref|YP_183317.1| - 0.085 12.7 0.3 6.1 6.8 0.1 2.1 2 0 0 2 2 2 0 AN1-like Zinc finger HTH_32 PF13565.1 gi|57640839|ref|YP_183317.1| - 0.13 13.1 0.0 0.41 11.4 0.0 1.8 2 0 0 2 2 2 0 Homeodomain-like domain zinc_ribbon_4 PF13717.1 gi|57640839|ref|YP_183317.1| - 0.15 11.7 2.8 5.9 6.6 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|57640839|ref|YP_183317.1| - 0.21 10.9 1.4 11 5.4 0.1 2.8 3 0 0 3 3 3 0 TFIIB zinc-binding zinc_ribbon_5 PF13719.1 gi|57640839|ref|YP_183317.1| - 0.55 9.8 5.5 15 5.2 3.8 2.3 1 1 0 1 1 1 0 zinc-ribbon domain zf-ISL3 PF14690.1 gi|57640839|ref|YP_183317.1| - 2.2 8.3 5.6 15 5.7 0.7 2.8 2 1 1 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DUF3814 PF12769.2 gi|57640840|ref|YP_183318.1| - 0.12 12.5 11.0 0.15 12.2 0.8 2.5 2 1 0 2 2 2 0 Domain of unknown function (DUF3814) DUF3325 PF11804.3 gi|57640840|ref|YP_183318.1| - 0.41 10.6 7.9 0.72 9.8 0.2 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF3325) DUF1113 PF06541.6 gi|57640840|ref|YP_183318.1| - 0.76 9.5 6.8 0.097 12.4 0.6 2.3 2 1 1 3 3 3 0 Protein of unknown function (DUF1113) Endonuclease_5 PF04493.9 gi|57640841|ref|YP_183319.1| - 2.1e-47 161.1 0.0 1.6e-42 145.2 0.0 2.0 1 1 1 2 2 2 2 Endonuclease V TAFII55_N PF04658.8 gi|57640841|ref|YP_183319.1| - 0.094 12.2 0.0 0.19 11.2 0.0 1.4 1 0 0 1 1 1 0 TAFII55 protein conserved region Translin PF01997.11 gi|57640842|ref|YP_183320.1| - 1.6e-39 135.5 0.1 1.9e-39 135.3 0.1 1.0 1 0 0 1 1 1 1 Translin family YfdX PF10938.3 gi|57640842|ref|YP_183320.1| - 0.058 13.0 0.6 0.23 11.1 0.0 2.2 2 0 0 2 2 2 0 YfdX protein NAP PF00956.13 gi|57640842|ref|YP_183320.1| - 0.11 11.5 0.2 0.23 10.5 0.0 1.6 2 0 0 2 2 2 0 Nucleosome assembly protein (NAP) Asparaginase PF00710.15 gi|57640843|ref|YP_183321.1| - 1.3e-97 326.4 0.0 1.6e-97 326.2 0.0 1.0 1 0 0 1 1 1 1 Asparaginase DUF104 PF01954.11 gi|57640844|ref|YP_183322.1| - 2e-21 75.7 2.9 2.2e-21 75.6 2.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF104 Phenyl_P_gamma PF09662.5 gi|57640844|ref|YP_183322.1| - 0.0011 18.5 0.0 0.0013 18.3 0.0 1.2 1 0 0 1 1 1 1 Phenylphosphate carboxylase gamma subunit (Phenyl_P_gamma) PIN PF01850.16 gi|57640845|ref|YP_183323.1| - 1.3e-21 77.1 0.2 2.1e-21 76.4 0.1 1.3 1 0 0 1 1 1 1 PIN domain PIN_3 PF13470.1 gi|57640845|ref|YP_183323.1| - 1.9e-05 25.2 0.0 3.7e-05 24.3 0.0 1.5 1 1 0 1 1 1 1 PIN domain GatB_N PF02934.10 gi|57640846|ref|YP_183324.1| - 4.8e-73 245.5 0.0 7.9e-73 244.8 0.0 1.3 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.13 gi|57640846|ref|YP_183324.1| - 7.4e-29 100.3 6.8 7.4e-29 100.3 4.7 2.2 2 0 0 2 2 2 1 GatB domain GAD PF02938.9 gi|57640846|ref|YP_183324.1| - 4e-20 71.7 2.0 1.6e-19 69.8 0.1 2.8 2 0 0 2 2 2 1 GAD domain YqeY PF09424.5 gi|57640846|ref|YP_183324.1| - 1.7e-09 37.6 3.0 1.7e-09 37.6 2.1 2.9 3 1 0 3 3 3 1 Yqey-like protein tRNA_synt_1c_R1 PF04558.10 gi|57640846|ref|YP_183324.1| - 0.039 13.4 1.4 0.12 11.8 0.1 2.3 2 0 0 2 2 2 0 Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 Ldh_1_C PF02866.13 gi|57640846|ref|YP_183324.1| - 0.055 13.1 0.2 0.16 11.6 0.1 1.8 1 0 0 1 1 1 0 lactate/malate dehydrogenase, alpha/beta C-terminal domain RecX PF02631.11 gi|57640846|ref|YP_183324.1| - 2 8.6 7.1 0.98 9.6 0.1 3.6 3 1 1 4 4 4 0 RecX family ATPase_gene1 PF09527.5 gi|57640847|ref|YP_183325.1| - 0.038 13.7 4.9 0.06 13.1 3.4 1.2 1 0 0 1 1 1 0 Putative F0F1-ATPase subunit (ATPase_gene1) DUF2157 PF09925.4 gi|57640847|ref|YP_183325.1| - 0.044 13.3 0.1 0.067 12.7 0.0 1.3 1 0 0 1 1 1 0 Predicted membrane protein (DUF2157) HMG-CoA_red PF00368.13 gi|57640849|ref|YP_183327.1| - 7.3e-154 511.9 0.5 8.4e-154 511.7 0.3 1.0 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A reductase CbiA PF01656.18 gi|57640850|ref|YP_183328.1| - 4.1e-22 78.5 0.0 5e-22 78.2 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|57640850|ref|YP_183328.1| - 2.1e-10 40.7 0.0 3.2e-10 40.1 0.0 1.2 1 0 0 1 1 1 1 AAA domain Fer4_NifH PF00142.13 gi|57640850|ref|YP_183328.1| - 3.9e-09 36.0 0.1 0.0011 18.2 0.0 2.1 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ArsA_ATPase PF02374.10 gi|57640850|ref|YP_183328.1| - 7.3e-06 25.2 0.1 1.3e-05 24.4 0.1 1.7 1 1 0 1 1 1 1 Anion-transporting ATPase AAA_17 PF13207.1 gi|57640850|ref|YP_183328.1| - 4.6e-05 24.2 0.1 0.0002 22.1 0.0 2.0 1 1 0 2 2 2 1 AAA domain SRP54 PF00448.17 gi|57640850|ref|YP_183328.1| - 5.9e-05 22.5 0.2 0.00017 21.0 0.1 1.7 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain AAA_19 PF13245.1 gi|57640850|ref|YP_183328.1| - 0.00045 19.9 0.4 0.0009 18.9 0.3 1.5 1 0 0 1 1 1 1 Part of AAA domain KTI12 PF08433.5 gi|57640850|ref|YP_183328.1| - 0.00054 19.2 0.0 0.00097 18.4 0.0 1.4 1 0 0 1 1 1 1 Chromatin associated protein KTI12 APS_kinase PF01583.15 gi|57640850|ref|YP_183328.1| - 0.00055 19.6 0.0 0.0011 18.6 0.0 1.5 1 0 0 1 1 1 1 Adenylylsulphate kinase AAA_26 PF13500.1 gi|57640850|ref|YP_183328.1| - 0.00081 19.0 1.4 0.016 14.8 0.1 2.2 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|57640850|ref|YP_183328.1| - 0.0013 19.0 0.1 0.0048 17.2 0.0 1.9 2 0 0 2 2 2 1 AAA domain Zeta_toxin PF06414.7 gi|57640850|ref|YP_183328.1| - 0.0033 16.5 0.0 0.011 14.7 0.0 1.8 2 0 0 2 2 2 1 Zeta toxin GTP_EFTU PF00009.22 gi|57640850|ref|YP_183328.1| - 0.005 16.2 1.0 0.091 12.1 0.7 2.1 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain YhjQ PF06564.7 gi|57640850|ref|YP_183328.1| - 0.0083 15.5 0.0 0.021 14.1 0.0 1.8 1 1 0 1 1 1 1 YhjQ protein MipZ PF09140.6 gi|57640850|ref|YP_183328.1| - 0.0095 15.0 0.1 0.017 14.1 0.1 1.5 1 0 0 1 1 1 1 ATPase MipZ AAA_25 PF13481.1 gi|57640850|ref|YP_183328.1| - 0.012 14.9 0.0 0.025 14.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|57640850|ref|YP_183328.1| - 0.017 15.0 0.0 0.031 14.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain MobB PF03205.9 gi|57640850|ref|YP_183328.1| - 0.024 14.3 0.1 0.056 13.1 0.1 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_10 PF12846.2 gi|57640850|ref|YP_183328.1| - 0.024 14.0 0.1 0.051 13.0 0.0 1.4 1 0 0 1 1 1 0 AAA-like domain NTPase_1 PF03266.10 gi|57640850|ref|YP_183328.1| - 0.027 14.1 0.8 0.043 13.5 0.1 1.6 2 0 0 2 2 2 0 NTPase T2SE PF00437.15 gi|57640850|ref|YP_183328.1| - 0.028 13.3 0.2 0.043 12.7 0.1 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein PRK PF00485.13 gi|57640850|ref|YP_183328.1| - 0.034 13.7 0.0 0.056 12.9 0.0 1.4 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA_30 PF13604.1 gi|57640850|ref|YP_183328.1| - 0.039 13.5 0.3 0.058 12.9 0.2 1.2 1 0 0 1 1 1 0 AAA domain VirC1 PF07015.6 gi|57640850|ref|YP_183328.1| - 0.041 12.9 0.0 0.082 11.9 0.0 1.5 1 0 0 1 1 1 0 VirC1 protein DUF1611 PF07755.6 gi|57640850|ref|YP_183328.1| - 0.092 11.3 0.5 0.25 9.9 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1611) ATP_bind_1 PF03029.12 gi|57640850|ref|YP_183328.1| - 0.11 11.9 0.5 0.27 10.7 0.1 1.8 2 1 0 2 2 2 0 Conserved hypothetical ATP binding protein ArgK PF03308.11 gi|57640850|ref|YP_183328.1| - 0.12 11.1 0.1 0.2 10.4 0.0 1.3 1 0 0 1 1 1 0 ArgK protein DUF2075 PF09848.4 gi|57640850|ref|YP_183328.1| - 0.13 11.1 0.0 0.18 10.7 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) NB-ARC PF00931.17 gi|57640850|ref|YP_183328.1| - 0.25 10.1 0.8 0.41 9.4 0.2 1.6 2 0 0 2 2 2 0 NB-ARC domain ADH_N PF08240.7 gi|57640851|ref|YP_183329.1| - 4.4e-37 126.1 1.8 1e-36 125.0 1.2 1.6 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|57640851|ref|YP_183329.1| - 4.5e-28 97.3 0.0 7.7e-28 96.6 0.0 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase DUF2370 PF10176.4 gi|57640851|ref|YP_183329.1| - 0.13 11.5 0.0 0.2 10.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2370) UPF0175 PF03683.8 gi|57640852|ref|YP_183330.1| - 2.7e-30 103.6 0.1 2.9e-30 103.5 0.1 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0175) DUF3368 PF11848.3 gi|57640853|ref|YP_183331.1| - 1.1e-15 56.8 0.8 2.2e-15 55.9 0.6 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF3368) tRNA-synt_2d PF01409.15 gi|57640856|ref|YP_183334.1| - 9.2e-84 280.4 0.0 1.2e-83 280.0 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) HTH_27 PF13463.1 gi|57640856|ref|YP_183334.1| - 1.5e-06 28.4 7.9 0.021 15.1 0.2 4.1 4 1 0 4 4 4 2 Winged helix DNA-binding domain tRNA-synt_2 PF00152.15 gi|57640856|ref|YP_183334.1| - 4.6e-06 25.6 1.5 0.0053 15.5 0.0 2.8 3 1 0 3 3 3 2 tRNA synthetases class II (D, K and N) TrmB PF01978.14 gi|57640856|ref|YP_183334.1| - 0.0014 18.3 6.6 0.0038 16.8 0.9 3.8 4 0 0 4 4 4 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|57640856|ref|YP_183334.1| - 0.0019 17.8 0.4 0.76 9.5 0.1 3.6 4 0 0 4 4 4 1 MarR family MarR_2 PF12802.2 gi|57640856|ref|YP_183334.1| - 0.063 12.9 1.7 3.1 7.5 0.2 3.5 4 0 0 4 4 4 0 MarR family AAA_assoc_C PF09821.4 gi|57640856|ref|YP_183334.1| - 0.11 12.7 2.7 3.9 7.7 0.1 3.2 2 1 1 3 3 3 0 C-terminal AAA-associated domain TFIIE_alpha PF02002.12 gi|57640856|ref|YP_183334.1| - 0.23 10.9 8.4 0.032 13.7 1.1 2.7 3 0 0 3 3 3 0 TFIIE alpha subunit HHH_5 PF14520.1 gi|57640856|ref|YP_183334.1| - 5.5 7.2 7.4 2.7 8.2 2.2 2.8 2 1 0 2 2 2 0 Helix-hairpin-helix domain DUF2283 PF10049.4 gi|57640857|ref|YP_183335.1| - 3.5e-17 61.9 0.2 5.1e-17 61.4 0.2 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF2283) YycI PF09648.5 gi|57640857|ref|YP_183335.1| - 0.026 13.9 0.0 0.032 13.7 0.0 1.1 1 0 0 1 1 1 0 YycH protein DnaB_bind PF10410.4 gi|57640858|ref|YP_183336.1| - 0.011 15.7 1.9 0.16 12.0 0.1 2.8 3 0 0 3 3 3 0 DnaB-helicase binding domain of primase GvpK PF05121.7 gi|57640858|ref|YP_183336.1| - 0.12 12.1 0.3 0.14 11.9 0.2 1.0 1 0 0 1 1 1 0 Gas vesicle protein K HTH_25 PF13413.1 gi|57640858|ref|YP_183336.1| - 0.13 11.8 1.1 0.21 11.2 0.7 1.5 1 1 0 1 1 1 0 Helix-turn-helix domain Death PF00531.17 gi|57640858|ref|YP_183336.1| - 0.14 11.9 0.2 0.27 11.0 0.1 1.6 1 1 0 1 1 1 0 Death domain DUF2774 PF11242.3 gi|57640858|ref|YP_183336.1| - 0.14 12.1 1.5 0.29 11.1 0.4 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF2774) PIN_2 PF10130.4 gi|57640859|ref|YP_183337.1| - 2.3e-21 76.2 0.0 2.9e-21 75.9 0.0 1.0 1 0 0 1 1 1 1 PIN domain PIN_3 PF13470.1 gi|57640859|ref|YP_183337.1| - 3.4e-07 30.9 0.0 5e-07 30.4 0.0 1.2 1 0 0 1 1 1 1 PIN domain PIN PF01850.16 gi|57640859|ref|YP_183337.1| - 0.0005 20.3 0.7 0.0013 19.0 0.5 1.7 1 1 0 1 1 1 1 PIN domain B5 PF03484.10 gi|57640860|ref|YP_183338.1| - 1.2e-17 63.5 0.6 8.7e-16 57.5 0.2 2.8 3 0 0 3 3 3 1 tRNA synthetase B5 domain B3_4 PF03483.12 gi|57640860|ref|YP_183338.1| - 7.2e-17 61.3 0.0 1.1e-16 60.7 0.0 1.3 1 0 0 1 1 1 1 B3/4 domain tRNA-synt_2d PF01409.15 gi|57640860|ref|YP_183338.1| - 7.6e-06 25.3 0.0 3.1e-05 23.2 0.0 2.0 1 1 0 1 1 1 1 tRNA synthetases class II core domain (F) PseudoU_synth_1 PF01416.15 gi|57640862|ref|YP_183340.1| - 2.6e-34 117.8 0.0 1.2e-17 64.2 0.0 2.1 2 0 0 2 2 2 2 tRNA pseudouridine synthase ResIII PF04851.10 gi|57640863|ref|YP_183341.1| - 6.5e-19 68.4 0.0 5.9e-18 65.3 0.0 2.2 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_C PF00271.26 gi|57640863|ref|YP_183341.1| - 1.1e-11 44.4 0.0 3.3e-11 42.8 0.0 1.9 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DEAD PF00270.24 gi|57640863|ref|YP_183341.1| - 3.6e-08 33.0 0.5 2.6e-07 30.2 0.0 2.6 2 2 1 3 3 3 1 DEAD/DEAH box helicase SNF2_N PF00176.18 gi|57640863|ref|YP_183341.1| - 0.0012 17.7 0.0 0.0047 15.7 0.0 1.8 1 1 0 1 1 1 1 SNF2 family N-terminal domain DUF2075 PF09848.4 gi|57640863|ref|YP_183341.1| - 0.012 14.5 0.0 0.022 13.7 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) NLBH PF05211.7 gi|57640863|ref|YP_183341.1| - 0.065 12.4 0.0 0.12 11.5 0.0 1.4 1 0 0 1 1 1 0 Neuraminyllactose-binding hemagglutinin precursor (NLBH) UbiD PF01977.11 gi|57640864|ref|YP_183342.1| - 2e-118 395.4 0.2 2.4e-118 395.1 0.1 1.0 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase DUF4539 PF15072.1 gi|57640864|ref|YP_183342.1| - 0.11 12.1 0.1 31 4.3 0.0 2.9 3 0 0 3 3 3 0 Domain of unknown function (DUF4539) LexA_DNA_bind PF01726.11 gi|57640865|ref|YP_183343.1| - 0.028 13.9 0.0 0.1 12.1 0.0 2.0 2 0 0 2 2 2 0 LexA DNA binding domain HTH_27 PF13463.1 gi|57640865|ref|YP_183343.1| - 0.058 13.7 0.3 7.6 6.9 0.0 2.6 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_Crp_2 PF13545.1 gi|57640865|ref|YP_183343.1| - 0.13 12.0 0.1 5.4 6.8 0.0 2.6 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain OrfB_IS605 PF01385.14 gi|57640866|ref|YP_183344.1| - 1.7e-34 119.2 5.7 2.2e-34 118.8 3.9 1.1 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|57640866|ref|YP_183344.1| - 1.9e-25 88.3 0.2 4.8e-25 87.0 0.0 1.9 2 0 0 2 2 2 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|57640866|ref|YP_183344.1| - 2e-11 43.0 0.8 4.7e-11 41.8 0.5 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain TF_Zn_Ribbon PF08271.7 gi|57640866|ref|YP_183344.1| - 3e-05 23.2 0.3 0.11 11.8 0.0 2.4 2 0 0 2 2 2 2 TFIIB zinc-binding ALMS_motif PF15309.1 gi|57640866|ref|YP_183344.1| - 0.017 14.9 1.5 0.017 14.9 1.0 1.8 2 0 0 2 2 2 0 ALMS motif RecR PF02132.10 gi|57640866|ref|YP_183344.1| - 0.053 12.9 1.8 0.71 9.3 0.0 2.4 1 1 1 2 2 2 0 RecR protein Amidase_2 PF01510.20 gi|57640866|ref|YP_183344.1| - 0.13 12.3 0.0 0.7 9.9 0.0 2.1 2 1 0 2 2 2 0 N-acetylmuramoyl-L-alanine amidase Y1_Tnp PF01797.11 gi|57640867|ref|YP_183345.1| - 7.5e-39 132.3 1.8 8.5e-39 132.1 1.2 1.0 1 0 0 1 1 1 1 Transposase IS200 like LSM PF01423.17 gi|57640868|ref|YP_183346.1| - 2.2e-07 30.3 0.1 2.5e-07 30.1 0.1 1.1 1 0 0 1 1 1 1 LSM domain MobB PF03205.9 gi|57640869|ref|YP_183347.1| - 1.1e-37 128.8 0.1 2.2e-37 127.8 0.1 1.6 1 1 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B FeS PF04060.8 gi|57640869|ref|YP_183347.1| - 1.5e-11 43.6 0.4 2.7e-11 42.8 0.3 1.5 1 0 0 1 1 1 1 Putative Fe-S cluster Sulfatase PF00884.18 gi|57640869|ref|YP_183347.1| - 0.0022 17.2 0.0 0.0027 16.9 0.0 1.1 1 0 0 1 1 1 1 Sulfatase SRP54 PF00448.17 gi|57640869|ref|YP_183347.1| - 0.0026 17.2 0.1 0.0049 16.3 0.1 1.4 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain NTPase_1 PF03266.10 gi|57640869|ref|YP_183347.1| - 0.0059 16.3 0.1 0.034 13.8 0.0 2.0 2 0 0 2 2 2 1 NTPase AAA_16 PF13191.1 gi|57640869|ref|YP_183347.1| - 0.008 16.1 0.0 0.011 15.6 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain KTI12 PF08433.5 gi|57640869|ref|YP_183347.1| - 0.0082 15.3 0.1 0.017 14.3 0.0 1.5 2 0 0 2 2 2 1 Chromatin associated protein KTI12 AAA_30 PF13604.1 gi|57640869|ref|YP_183347.1| - 0.0093 15.5 0.1 0.014 14.9 0.1 1.4 1 0 0 1 1 1 1 AAA domain CbiA PF01656.18 gi|57640869|ref|YP_183347.1| - 0.011 15.2 0.1 0.021 14.2 0.1 1.5 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_29 PF13555.1 gi|57640869|ref|YP_183347.1| - 0.035 13.6 0.0 0.058 12.9 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain ArgK PF03308.11 gi|57640869|ref|YP_183347.1| - 0.039 12.7 0.1 0.07 11.9 0.0 1.4 1 0 0 1 1 1 0 ArgK protein Thymidylate_kin PF02223.12 gi|57640869|ref|YP_183347.1| - 0.042 13.2 0.0 0.065 12.5 0.0 1.4 1 0 0 1 1 1 0 Thymidylate kinase AAA_28 PF13521.1 gi|57640869|ref|YP_183347.1| - 0.065 13.1 0.0 0.14 12.1 0.0 1.6 1 0 0 1 1 1 0 AAA domain LpxK PF02606.9 gi|57640869|ref|YP_183347.1| - 0.085 11.7 0.0 0.18 10.7 0.0 1.4 1 0 0 1 1 1 0 Tetraacyldisaccharide-1-P 4'-kinase AAA_26 PF13500.1 gi|57640869|ref|YP_183347.1| - 0.11 12.1 0.0 0.24 10.9 0.0 1.6 1 1 0 1 1 1 0 AAA domain NMT1 PF09084.6 gi|57640870|ref|YP_183348.1| - 3.3e-14 52.9 2.5 1.4e-12 47.7 0.3 2.2 1 1 1 2 2 2 2 NMT1/THI5 like Phosphonate-bd PF12974.2 gi|57640870|ref|YP_183348.1| - 5.5e-11 42.3 6.0 5.5e-10 39.0 1.5 2.2 1 1 0 2 2 2 2 ABC transporter, phosphonate, periplasmic substrate-binding protein NMT1_2 PF13379.1 gi|57640870|ref|YP_183348.1| - 3.1e-08 33.3 0.5 4.2e-08 32.8 0.3 1.1 1 0 0 1 1 1 1 NMT1-like family SBP_bac_3 PF00497.15 gi|57640870|ref|YP_183348.1| - 7.5e-08 31.9 1.2 6.8e-07 28.7 0.2 2.1 2 0 0 2 2 2 1 Bacterial extracellular solute-binding proteins, family 3 SBP_bac_11 PF13531.1 gi|57640870|ref|YP_183348.1| - 2e-05 24.3 5.6 4.8e-05 23.1 3.8 1.5 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein OpuAC PF04069.7 gi|57640870|ref|YP_183348.1| - 0.00096 18.5 2.3 0.0015 17.9 1.6 1.3 1 0 0 1 1 1 1 Substrate binding domain of ABC-type glycine betaine transport system PBP_like PF12727.2 gi|57640870|ref|YP_183348.1| - 0.0019 17.1 0.7 0.0019 17.1 0.5 1.7 1 1 1 2 2 2 1 PBP superfamily domain TctC PF03401.9 gi|57640870|ref|YP_183348.1| - 0.021 13.7 0.1 0.034 13.0 0.1 1.3 1 0 0 1 1 1 0 Tripartite tricarboxylate transporter family receptor DUF1850 PF08905.6 gi|57640871|ref|YP_183349.1| - 2.2e-14 53.0 0.1 3.2e-14 52.5 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1850) DctM PF06808.7 gi|57640872|ref|YP_183350.1| - 1e-81 274.6 53.1 4.7e-56 190.1 16.9 2.9 2 1 1 3 3 3 2 DctM-like transporters GHMP_kinases_N PF00288.21 gi|57640874|ref|YP_183352.1| - 1.3e-07 31.5 0.3 3.3e-07 30.2 0.2 1.7 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|57640874|ref|YP_183352.1| - 0.017 15.2 0.6 0.06 13.5 0.0 2.2 2 0 0 2 2 2 0 GHMP kinases C terminal DUF1886 PF09171.5 gi|57640875|ref|YP_183353.1| - 3.5e-89 298.0 0.0 4e-89 297.8 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1886) IPK PF03770.11 gi|57640875|ref|YP_183353.1| - 0.14 11.7 0.0 0.32 10.6 0.0 1.4 1 1 0 1 1 1 0 Inositol polyphosphate kinase ABC2_membrane_2 PF12679.2 gi|57640876|ref|YP_183354.1| - 1.6e-51 174.8 15.6 1.8e-51 174.6 10.8 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|57640876|ref|YP_183354.1| - 4.4e-20 71.8 23.9 6.4e-20 71.3 16.5 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|57640876|ref|YP_183354.1| - 5.8e-11 42.0 18.3 5.8e-11 42.0 12.7 1.5 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|57640876|ref|YP_183354.1| - 3.5e-05 23.1 15.9 3.5e-05 23.1 11.0 2.2 2 1 0 2 2 2 1 ABC-2 family transporter protein DUF373 PF04123.8 gi|57640876|ref|YP_183354.1| - 0.36 9.7 10.7 0.56 9.1 7.4 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF373) DUF21 PF01595.15 gi|57640876|ref|YP_183354.1| - 0.51 9.6 12.5 0.032 13.5 5.0 1.6 2 0 0 2 2 2 0 Domain of unknown function DUF21 DUF3671 PF12420.3 gi|57640876|ref|YP_183354.1| - 8.5 6.4 12.3 11 5.9 1.8 3.1 3 0 0 3 3 3 0 Protein of unknown function ABC_tran PF00005.22 gi|57640877|ref|YP_183355.1| - 1.8e-30 106.0 0.0 2.7e-30 105.4 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|57640877|ref|YP_183355.1| - 6.2e-15 55.9 0.6 1.3e-12 48.2 0.4 2.2 1 1 0 1 1 1 1 AAA domain DUF4162 PF13732.1 gi|57640877|ref|YP_183355.1| - 1.3e-06 28.8 0.0 3.3e-06 27.5 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_10 PF12846.2 gi|57640877|ref|YP_183355.1| - 0.0017 17.8 0.1 2.5 7.4 0.1 2.8 2 1 0 3 3 3 2 AAA-like domain AAA_29 PF13555.1 gi|57640877|ref|YP_183355.1| - 0.0052 16.2 0.0 0.01 15.3 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|57640877|ref|YP_183355.1| - 0.013 14.7 0.1 2.3 7.3 0.0 2.2 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain MMR_HSR1 PF01926.18 gi|57640877|ref|YP_183355.1| - 0.024 14.6 1.3 3.8 7.4 0.5 3.0 1 1 1 2 2 2 0 50S ribosome-binding GTPase AAA_23 PF13476.1 gi|57640877|ref|YP_183355.1| - 0.068 13.4 3.8 0.2 11.9 2.7 2.1 1 1 0 1 1 1 0 AAA domain Response_reg PF00072.19 gi|57640877|ref|YP_183355.1| - 0.097 12.6 0.0 0.8 9.7 0.0 2.3 3 0 0 3 3 3 0 Response regulator receiver domain AAA_25 PF13481.1 gi|57640877|ref|YP_183355.1| - 0.17 11.2 0.3 0.5 9.7 0.2 2.0 1 1 0 1 1 1 0 AAA domain ATP-grasp_5 PF13549.1 gi|57640878|ref|YP_183356.1| - 1.3e-80 269.8 0.3 1.4e-80 269.6 0.2 1.0 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_2 PF08442.5 gi|57640878|ref|YP_183356.1| - 1.6e-05 24.3 0.2 2.8e-05 23.6 0.1 1.8 1 1 0 1 1 1 1 ATP-grasp domain ATP-grasp_4 PF13535.1 gi|57640878|ref|YP_183356.1| - 0.00042 20.1 0.0 0.00077 19.2 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.12 gi|57640878|ref|YP_183356.1| - 0.0033 16.7 0.1 0.012 14.8 0.0 1.8 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, ATP binding domain RimK PF08443.6 gi|57640878|ref|YP_183356.1| - 0.022 14.2 0.2 0.63 9.4 0.0 2.2 2 0 0 2 2 2 0 RimK-like ATP-grasp domain Succ_CoA_lig PF13607.1 gi|57640879|ref|YP_183357.1| - 1.7e-57 192.8 7.0 5.2e-57 191.3 0.3 3.1 4 0 0 4 4 4 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.1 gi|57640879|ref|YP_183357.1| - 4.8e-28 97.6 0.9 3e-26 91.8 0.0 3.2 3 1 1 4 4 4 1 CoA binding domain CoA_binding PF02629.14 gi|57640879|ref|YP_183357.1| - 3.1e-16 59.6 0.5 3.1e-16 59.6 0.3 2.2 2 0 0 2 2 2 1 CoA binding domain Ligase_CoA PF00549.14 gi|57640879|ref|YP_183357.1| - 0.0064 16.0 0.1 0.031 13.8 0.0 2.1 2 0 0 2 2 2 1 CoA-ligase Peripla_BP_3 PF13377.1 gi|57640879|ref|YP_183357.1| - 0.013 15.4 0.0 0.048 13.6 0.0 2.0 2 0 0 2 2 2 0 Periplasmic binding protein-like domain NAD_Gly3P_dh_N PF01210.18 gi|57640879|ref|YP_183357.1| - 0.017 14.8 0.1 0.069 12.8 0.0 1.9 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Oxidored_nitro PF00148.14 gi|57640879|ref|YP_183357.1| - 0.018 13.7 0.9 0.058 12.0 0.0 2.2 2 1 0 2 2 2 0 Nitrogenase component 1 type Oxidoreductase CofC PF01983.11 gi|57640879|ref|YP_183357.1| - 0.094 11.6 0.5 0.96 8.3 0.0 2.1 2 0 0 2 2 2 0 Guanylyl transferase CofC like NTP_transf_2 PF01909.18 gi|57640880|ref|YP_183358.1| - 7.6e-10 38.9 1.9 7.8e-09 35.7 1.3 2.3 1 1 0 1 1 1 1 Nucleotidyltransferase domain DUF4269 PF14091.1 gi|57640880|ref|YP_183358.1| - 0.00063 19.7 0.0 0.0011 18.9 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4269) TPR_12 PF13424.1 gi|57640882|ref|YP_183360.1| - 1.1e-10 41.2 15.4 0.00013 21.7 0.5 5.4 4 1 2 6 6 6 3 Tetratricopeptide repeat SNAP PF14938.1 gi|57640882|ref|YP_183360.1| - 9.2e-10 38.1 7.8 1.8e-05 24.0 0.2 3.1 2 1 1 3 3 3 2 Soluble NSF attachment protein, SNAP TPR_14 PF13428.1 gi|57640882|ref|YP_183360.1| - 2.7e-09 36.8 5.3 1.3 9.8 0.0 6.4 3 2 2 6 6 6 1 Tetratricopeptide repeat TPR_16 PF13432.1 gi|57640882|ref|YP_183360.1| - 7.4e-07 29.6 11.0 0.39 11.4 0.9 5.3 4 1 0 4 4 4 2 Tetratricopeptide repeat TPR_7 PF13176.1 gi|57640882|ref|YP_183360.1| - 5.2e-06 25.8 7.9 0.39 10.6 0.0 5.5 5 0 0 5 5 5 2 Tetratricopeptide repeat TPR_2 PF07719.12 gi|57640882|ref|YP_183360.1| - 7.5e-06 25.4 22.6 0.0056 16.5 0.0 7.0 6 1 2 8 8 7 2 Tetratricopeptide repeat TPR_11 PF13414.1 gi|57640882|ref|YP_183360.1| - 0.00031 20.3 19.9 0.00086 18.9 0.1 5.8 4 3 2 6 6 6 1 TPR repeat TPR_19 PF14559.1 gi|57640882|ref|YP_183360.1| - 0.00062 20.0 11.2 0.019 15.3 0.2 5.3 4 2 1 5 5 4 2 Tetratricopeptide repeat TPR_20 PF14561.1 gi|57640882|ref|YP_183360.1| - 0.0035 17.4 4.1 2.5 8.2 0.0 3.8 2 1 1 3 3 3 1 Tetratricopeptide repeat Foie-gras_1 PF11817.3 gi|57640882|ref|YP_183360.1| - 0.0037 16.7 7.0 0.18 11.2 0.4 3.4 2 1 1 3 3 3 1 Foie gras liver health family 1 TPR_1 PF00515.23 gi|57640882|ref|YP_183360.1| - 0.0053 16.3 14.0 0.015 14.8 0.1 5.6 6 0 0 6 6 6 1 Tetratricopeptide repeat TPR_8 PF13181.1 gi|57640882|ref|YP_183360.1| - 0.0064 16.1 15.2 0.28 11.0 0.1 5.9 5 1 1 6 6 6 1 Tetratricopeptide repeat Mad3_BUB1_I PF08311.7 gi|57640882|ref|YP_183360.1| - 0.0081 15.9 5.8 0.86 9.3 0.0 4.0 4 2 0 4 4 4 1 Mad3/BUB1 homology region 1 RPN7 PF10602.4 gi|57640882|ref|YP_183360.1| - 0.014 14.7 7.3 0.21 10.9 0.4 3.5 4 1 1 5 5 5 0 26S proteasome subunit RPN7 TPR_10 PF13374.1 gi|57640882|ref|YP_183360.1| - 0.036 14.0 8.0 20 5.2 0.0 6.0 7 0 0 7 7 6 0 Tetratricopeptide repeat Vps39_1 PF10366.4 gi|57640882|ref|YP_183360.1| - 0.09 12.8 1.0 0.49 10.4 0.1 2.5 3 0 0 3 3 2 0 Vacuolar sorting protein 39 domain 1 SHNi-TPR PF10516.4 gi|57640882|ref|YP_183360.1| - 0.19 10.9 0.0 0.19 10.9 0.0 2.4 3 0 0 3 3 3 0 SHNi-TPR Clathrin PF00637.15 gi|57640882|ref|YP_183360.1| - 0.54 9.8 7.3 0.43 10.1 0.4 3.5 3 1 1 4 4 4 0 Region in Clathrin and VPS MIT PF04212.13 gi|57640882|ref|YP_183360.1| - 0.73 9.7 9.6 10 6.0 0.2 4.6 5 1 1 6 6 5 0 MIT (microtubule interacting and transport) domain NSF PF02071.15 gi|57640882|ref|YP_183360.1| - 2.5 9.0 18.6 4.6 8.2 0.2 6.5 6 0 0 6 6 4 0 Aromatic-di-Alanine (AdAR) repeat TPR_6 PF13174.1 gi|57640882|ref|YP_183360.1| - 2.5 8.7 10.4 1.1e+02 3.5 0.3 5.7 6 1 0 6 6 4 0 Tetratricopeptide repeat DUF2225 PF09986.4 gi|57640882|ref|YP_183360.1| - 3.1 7.1 8.8 4 6.8 1.0 3.5 1 1 2 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2225) Sua5_yciO_yrdC PF01300.13 gi|57640883|ref|YP_183361.1| - 1.5e-63 213.3 0.0 3.4e-63 212.1 0.0 1.6 2 0 0 2 2 2 1 Telomere recombination SUA5 PF03481.8 gi|57640883|ref|YP_183361.1| - 4.1e-34 117.3 0.1 6.5e-34 116.7 0.0 1.3 1 0 0 1 1 1 1 Putative GTP-binding controlling metal-binding ArgK PF03308.11 gi|57640883|ref|YP_183361.1| - 0.026 13.2 0.1 1.2 7.8 0.0 2.1 2 0 0 2 2 2 0 ArgK protein PTE PF02126.13 gi|57640883|ref|YP_183361.1| - 0.091 11.7 0.1 0.19 10.6 0.1 1.5 2 0 0 2 2 2 0 Phosphotriesterase family ICEA PF05315.6 gi|57640883|ref|YP_183361.1| - 0.12 11.6 0.0 0.17 11.1 0.0 1.2 1 0 0 1 1 1 0 ICEA Protein Glycos_transf_1 PF00534.15 gi|57640884|ref|YP_183362.1| - 1.9e-27 95.7 0.0 7.1e-27 93.9 0.0 2.0 2 1 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|57640884|ref|YP_183362.1| - 2.8e-27 95.8 0.8 4.1e-27 95.2 0.5 1.2 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|57640884|ref|YP_183362.1| - 1.6e-22 80.0 0.2 2.4e-22 79.4 0.1 1.2 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_2 PF13477.1 gi|57640884|ref|YP_183362.1| - 2e-20 73.0 0.0 3.1e-20 72.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_1_4 PF13692.1 gi|57640884|ref|YP_183362.1| - 3.8e-19 69.1 0.0 8e-17 61.6 0.0 2.6 2 1 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|57640884|ref|YP_183362.1| - 2.6e-13 50.0 0.0 5.7e-13 48.9 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 DUF3492 PF11997.3 gi|57640884|ref|YP_183362.1| - 3.5e-06 26.7 0.3 0.0008 19.0 0.1 2.5 2 0 0 2 2 2 2 Domain of unknown function (DUF3492) Glyco_transf_5 PF08323.6 gi|57640884|ref|YP_183362.1| - 0.00099 18.6 0.1 0.87 9.0 0.0 2.6 1 1 1 2 2 2 2 Starch synthase catalytic domain Epimerase_2 PF02350.14 gi|57640884|ref|YP_183362.1| - 0.17 10.6 0.0 0.52 9.0 0.0 1.7 2 0 0 2 2 2 0 UDP-N-acetylglucosamine 2-epimerase Asn_synthase PF00733.16 gi|57640885|ref|YP_183363.1| - 4.1e-60 203.4 0.2 2.1e-59 201.1 0.1 1.9 1 1 0 1 1 1 1 Asparagine synthase GATase_7 PF13537.1 gi|57640885|ref|YP_183363.1| - 3.2e-28 97.9 0.0 6.7e-28 96.9 0.0 1.6 2 0 0 2 2 2 1 Glutamine amidotransferase domain GATase_6 PF13522.1 gi|57640885|ref|YP_183363.1| - 5.1e-24 84.7 0.0 4e-23 81.8 0.0 2.1 2 0 0 2 2 2 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|57640885|ref|YP_183363.1| - 1.9e-11 43.3 0.0 2.1e-10 39.8 0.0 2.3 1 1 0 1 1 1 1 Glutamine amidotransferases class-II NAD_synthase PF02540.12 gi|57640885|ref|YP_183363.1| - 0.00068 18.6 0.0 0.0036 16.2 0.0 1.9 2 0 0 2 2 2 1 NAD synthase HTH_32 PF13565.1 gi|57640885|ref|YP_183363.1| - 0.021 15.6 0.3 12 6.8 0.0 2.6 2 0 0 2 2 2 0 Homeodomain-like domain QueC PF06508.8 gi|57640885|ref|YP_183363.1| - 0.033 13.4 0.0 0.051 12.8 0.0 1.3 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC ATP_bind_1 PF03029.12 gi|57640886|ref|YP_183364.1| - 8.2e-52 176.1 0.0 9.2e-52 175.9 0.0 1.0 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein CbiA PF01656.18 gi|57640886|ref|YP_183364.1| - 6.6e-10 38.7 0.0 1e-09 38.0 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MobB PF03205.9 gi|57640886|ref|YP_183364.1| - 2.5e-07 30.4 0.0 4.2e-07 29.7 0.0 1.3 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B SRP54 PF00448.17 gi|57640886|ref|YP_183364.1| - 1.9e-06 27.4 0.1 0.00033 20.1 0.1 2.5 3 0 0 3 3 3 1 SRP54-type protein, GTPase domain AAA_17 PF13207.1 gi|57640886|ref|YP_183364.1| - 1.9e-05 25.4 0.2 3.8e-05 24.4 0.1 1.6 1 1 0 1 1 1 1 AAA domain GTP_EFTU PF00009.22 gi|57640886|ref|YP_183364.1| - 2.2e-05 23.9 0.0 0.25 10.7 0.0 2.6 2 1 0 2 2 2 2 Elongation factor Tu GTP binding domain AAA_31 PF13614.1 gi|57640886|ref|YP_183364.1| - 3.2e-05 23.8 0.0 0.00067 19.6 0.0 2.6 3 0 0 3 3 3 1 AAA domain MipZ PF09140.6 gi|57640886|ref|YP_183364.1| - 7.2e-05 21.9 0.0 0.00012 21.2 0.0 1.3 1 0 0 1 1 1 1 ATPase MipZ AAA_24 PF13479.1 gi|57640886|ref|YP_183364.1| - 0.00034 20.2 0.0 0.00056 19.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain ArgK PF03308.11 gi|57640886|ref|YP_183364.1| - 0.00086 18.1 0.0 0.006 15.3 0.0 2.2 3 1 0 3 3 3 1 ArgK protein NTPase_1 PF03266.10 gi|57640886|ref|YP_183364.1| - 0.0015 18.3 0.2 0.0097 15.6 0.1 1.9 1 1 0 1 1 1 1 NTPase AAA_16 PF13191.1 gi|57640886|ref|YP_183364.1| - 0.0018 18.2 0.0 0.003 17.5 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.1 gi|57640886|ref|YP_183364.1| - 0.0071 15.9 0.0 0.015 14.8 0.0 1.5 2 0 0 2 2 2 1 AAA domain IstB_IS21 PF01695.12 gi|57640886|ref|YP_183364.1| - 0.0076 15.6 0.0 0.013 14.9 0.0 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_18 PF13238.1 gi|57640886|ref|YP_183364.1| - 0.0094 16.2 0.5 0.021 15.1 0.3 1.7 1 1 0 1 1 1 1 AAA domain KTI12 PF08433.5 gi|57640886|ref|YP_183364.1| - 0.017 14.3 0.0 0.022 13.9 0.0 1.2 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA_28 PF13521.1 gi|57640886|ref|YP_183364.1| - 0.028 14.3 0.4 0.065 13.1 0.3 1.8 1 1 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|57640886|ref|YP_183364.1| - 0.032 13.4 0.0 4.8 6.3 0.0 2.5 3 0 0 3 3 3 0 Protein of unknown function, DUF258 AAA_10 PF12846.2 gi|57640886|ref|YP_183364.1| - 0.036 13.5 0.0 0.057 12.8 0.0 1.2 1 0 0 1 1 1 0 AAA-like domain APS_kinase PF01583.15 gi|57640886|ref|YP_183364.1| - 0.036 13.7 0.0 0.054 13.1 0.0 1.3 1 0 0 1 1 1 0 Adenylylsulphate kinase cobW PF02492.14 gi|57640886|ref|YP_183364.1| - 0.061 12.7 0.3 0.58 9.5 0.1 2.4 2 1 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain MMR_HSR1 PF01926.18 gi|57640886|ref|YP_183364.1| - 0.061 13.2 0.0 0.23 11.4 0.0 2.0 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_14 PF13173.1 gi|57640886|ref|YP_183364.1| - 0.078 12.8 0.1 0.15 11.9 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|57640886|ref|YP_183364.1| - 0.1 12.7 0.1 0.23 11.6 0.1 1.6 1 0 0 1 1 1 0 AAA domain PduV-EutP PF10662.4 gi|57640886|ref|YP_183364.1| - 0.17 11.3 0.1 1.8 8.0 0.1 2.4 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation CbiA PF01656.18 gi|57640887|ref|YP_183365.1| - 2.9e-33 114.9 0.3 4.5e-33 114.2 0.2 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Fer4_NifH PF00142.13 gi|57640887|ref|YP_183365.1| - 4.2e-16 58.9 0.4 4.2e-07 29.4 0.0 2.1 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_31 PF13614.1 gi|57640887|ref|YP_183365.1| - 1.4e-15 57.5 0.0 2e-15 57.0 0.0 1.1 1 0 0 1 1 1 1 AAA domain YhjQ PF06564.7 gi|57640887|ref|YP_183365.1| - 4e-12 46.0 0.0 1.2e-11 44.4 0.0 1.6 1 1 0 1 1 1 1 YhjQ protein MipZ PF09140.6 gi|57640887|ref|YP_183365.1| - 8.3e-10 38.1 0.1 2.7e-09 36.4 0.1 1.7 1 1 0 1 1 1 1 ATPase MipZ ArsA_ATPase PF02374.10 gi|57640887|ref|YP_183365.1| - 1.2e-06 27.8 0.6 4.1e-05 22.7 0.1 2.2 2 0 0 2 2 2 1 Anion-transporting ATPase AAA_26 PF13500.1 gi|57640887|ref|YP_183365.1| - 1.5e-05 24.7 0.0 1.5e-05 24.7 0.0 1.9 2 0 0 2 2 2 1 AAA domain ParA PF10609.4 gi|57640887|ref|YP_183365.1| - 2.5e-05 24.0 0.3 5.4e-05 22.9 0.2 1.6 1 1 0 1 1 1 1 ParA/MinD ATPase like SRP54 PF00448.17 gi|57640887|ref|YP_183365.1| - 0.00043 19.7 1.2 0.014 14.8 0.6 2.2 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain AAA_30 PF13604.1 gi|57640887|ref|YP_183365.1| - 0.0089 15.6 0.8 0.013 15.0 0.1 1.6 2 0 0 2 2 2 1 AAA domain VirC1 PF07015.6 gi|57640887|ref|YP_183365.1| - 0.029 13.4 0.5 0.06 12.4 0.3 1.4 1 0 0 1 1 1 0 VirC1 protein AAA_17 PF13207.1 gi|57640887|ref|YP_183365.1| - 0.051 14.4 0.1 0.11 13.2 0.1 1.5 1 1 0 1 1 1 0 AAA domain APS_kinase PF01583.15 gi|57640887|ref|YP_183365.1| - 0.064 12.9 0.2 0.1 12.2 0.1 1.3 1 0 0 1 1 1 0 Adenylylsulphate kinase Abhydrolase_5 PF12695.2 gi|57640887|ref|YP_183365.1| - 0.11 12.2 0.0 1.8 8.2 0.0 2.2 2 0 0 2 2 2 0 Alpha/beta hydrolase family AAA_6 PF12774.2 gi|57640887|ref|YP_183365.1| - 0.14 11.6 0.1 0.24 10.8 0.1 1.3 1 0 0 1 1 1 0 Hydrolytic ATP binding site of dynein motor region D1 T2SE PF00437.15 gi|57640888|ref|YP_183366.1| - 1.4e-10 40.5 0.1 3.1e-10 39.4 0.0 1.5 1 0 0 1 1 1 1 Type II/IV secretion system protein KH_1 PF00013.24 gi|57640888|ref|YP_183366.1| - 1.5e-07 30.9 1.3 4.6e-07 29.3 0.9 1.8 1 0 0 1 1 1 1 KH domain KH_3 PF13014.1 gi|57640888|ref|YP_183366.1| - 0.00018 21.0 0.6 0.00046 19.7 0.4 1.7 1 0 0 1 1 1 1 KH domain AAA_17 PF13207.1 gi|57640888|ref|YP_183366.1| - 0.00032 21.5 2.2 0.0012 19.6 0.0 2.9 3 2 0 3 3 3 1 AAA domain PIN_4 PF13638.1 gi|57640888|ref|YP_183366.1| - 0.0026 17.8 0.0 0.0067 16.5 0.0 1.7 1 1 0 1 1 1 1 PIN domain Thymidylate_kin PF02223.12 gi|57640888|ref|YP_183366.1| - 0.0026 17.1 0.1 0.0091 15.3 0.0 2.0 1 1 1 2 2 2 1 Thymidylate kinase KH_2 PF07650.12 gi|57640888|ref|YP_183366.1| - 0.0027 17.2 6.1 0.0031 17.0 1.4 3.0 2 1 0 2 2 2 1 KH domain FtsK_SpoIIIE PF01580.13 gi|57640888|ref|YP_183366.1| - 0.0037 16.7 0.0 0.0077 15.7 0.0 1.5 1 0 0 1 1 1 1 FtsK/SpoIIIE family AAA_25 PF13481.1 gi|57640888|ref|YP_183366.1| - 0.0048 16.3 0.0 0.014 14.7 0.0 1.8 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|57640888|ref|YP_183366.1| - 0.0051 17.1 5.9 0.015 15.6 0.0 4.0 5 1 0 5 5 5 1 AAA domain AAA_19 PF13245.1 gi|57640888|ref|YP_183366.1| - 0.0082 15.8 0.0 0.02 14.6 0.0 1.6 1 0 0 1 1 1 1 Part of AAA domain AAA_14 PF13173.1 gi|57640888|ref|YP_183366.1| - 0.015 15.1 0.0 0.046 13.6 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|57640888|ref|YP_183366.1| - 0.017 15.2 0.0 0.068 13.3 0.0 2.1 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|57640888|ref|YP_183366.1| - 0.045 13.7 0.0 0.12 12.3 0.0 1.7 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.12 gi|57640888|ref|YP_183366.1| - 0.047 13.1 0.0 0.11 11.9 0.0 1.6 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_5 PF07728.9 gi|57640888|ref|YP_183366.1| - 0.05 13.3 0.0 0.12 12.0 0.0 1.7 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) Sigma54_activ_2 PF14532.1 gi|57640888|ref|YP_183366.1| - 0.054 13.5 0.0 0.12 12.4 0.0 1.5 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_33 PF13671.1 gi|57640888|ref|YP_183366.1| - 0.057 13.2 0.1 0.39 10.5 0.0 2.4 3 0 0 3 3 3 0 AAA domain NACHT PF05729.7 gi|57640888|ref|YP_183366.1| - 0.07 12.7 0.1 0.14 11.7 0.1 1.4 1 0 0 1 1 1 0 NACHT domain AAA PF00004.24 gi|57640888|ref|YP_183366.1| - 0.072 13.2 0.0 0.2 11.8 0.0 1.8 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) RNA_helicase PF00910.17 gi|57640888|ref|YP_183366.1| - 0.13 12.4 0.0 0.27 11.4 0.0 1.5 1 0 0 1 1 1 0 RNA helicase SHOCT PF09851.4 gi|57640888|ref|YP_183366.1| - 0.89 9.1 6.0 1.6 8.3 0.7 3.0 2 0 0 2 2 2 0 Short C-terminal domain Maf PF02545.9 gi|57640889|ref|YP_183367.1| - 6.9e-61 204.7 0.0 7.9e-61 204.5 0.0 1.0 1 0 0 1 1 1 1 Maf-like protein NTP_transferase PF00483.18 gi|57640890|ref|YP_183368.1| - 1.4e-45 155.5 0.0 1.9e-45 155.1 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.19 gi|57640890|ref|YP_183368.1| - 1.4e-13 49.6 8.5 5.5e-06 25.6 1.3 3.4 2 1 0 3 3 3 3 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.2 gi|57640890|ref|YP_183368.1| - 6.9e-11 42.4 0.0 9.9e-11 41.9 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.14 gi|57640890|ref|YP_183368.1| - 0.024 14.1 0.0 0.042 13.3 0.0 1.4 1 0 0 1 1 1 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase MUG2_C PF08593.5 gi|57640890|ref|YP_183368.1| - 0.03 14.5 0.0 0.051 13.8 0.0 1.3 1 0 0 1 1 1 0 Meiotically up-regulated glycoproteins C-terminal Hexapep_2 PF14602.1 gi|57640890|ref|YP_183368.1| - 3.2 7.3 8.3 0.51 9.9 0.4 3.1 3 1 0 3 3 3 0 Hexapeptide repeat of succinyl-transferase TrmB PF01978.14 gi|57640891|ref|YP_183369.1| - 8.2e-06 25.4 0.1 1.1e-05 25.0 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB FeoC PF09012.5 gi|57640891|ref|YP_183369.1| - 2e-05 24.2 0.1 2.8e-05 23.7 0.1 1.3 1 0 0 1 1 1 1 FeoC like transcriptional regulator HTH_24 PF13412.1 gi|57640891|ref|YP_183369.1| - 3.3e-05 23.1 0.3 5.2e-05 22.5 0.2 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding DUF4423 PF14394.1 gi|57640891|ref|YP_183369.1| - 0.00046 19.7 0.1 0.0006 19.3 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) HTH_20 PF12840.2 gi|57640891|ref|YP_183369.1| - 0.00094 18.9 0.0 0.0013 18.4 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain DUF2250 PF10007.4 gi|57640891|ref|YP_183369.1| - 0.00094 19.0 0.0 0.0013 18.6 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) MarR_2 PF12802.2 gi|57640891|ref|YP_183369.1| - 0.001 18.6 0.0 0.0013 18.3 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_36 PF13730.1 gi|57640891|ref|YP_183369.1| - 0.0028 17.7 0.1 0.0059 16.6 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain LexA_DNA_bind PF01726.11 gi|57640891|ref|YP_183369.1| - 0.0031 17.0 0.1 0.0069 15.9 0.1 1.6 1 1 0 1 1 1 1 LexA DNA binding domain DDE_Tnp_1_6 PF13751.1 gi|57640891|ref|YP_183369.1| - 0.0042 17.0 0.1 0.0049 16.8 0.1 1.2 1 0 0 1 1 1 1 Transposase DDE domain IF2_N PF04760.10 gi|57640891|ref|YP_183369.1| - 0.0049 16.4 0.4 0.02 14.5 0.3 2.0 1 1 0 1 1 1 1 Translation initiation factor IF-2, N-terminal region Sigma70_r3 PF04539.11 gi|57640891|ref|YP_183369.1| - 0.013 15.3 0.1 0.028 14.3 0.1 1.5 1 0 0 1 1 1 0 Sigma-70 region 3 GerE PF00196.14 gi|57640891|ref|YP_183369.1| - 0.014 14.6 0.1 0.02 14.2 0.0 1.2 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family HTH_Mga PF08280.6 gi|57640891|ref|YP_183369.1| - 0.014 15.1 0.0 0.023 14.4 0.0 1.3 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain Fe_dep_repress PF01325.14 gi|57640891|ref|YP_183369.1| - 0.017 15.0 0.0 0.025 14.4 0.0 1.3 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain MarR PF01047.17 gi|57640891|ref|YP_183369.1| - 0.017 14.8 0.0 0.023 14.3 0.0 1.2 1 0 0 1 1 1 0 MarR family FaeA PF04703.7 gi|57640891|ref|YP_183369.1| - 0.019 15.1 0.0 0.024 14.7 0.0 1.2 1 0 0 1 1 1 0 FaeA-like protein HTH_IclR PF09339.5 gi|57640891|ref|YP_183369.1| - 0.021 14.3 0.0 0.032 13.8 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain RNA_pol_Rpc34 PF05158.7 gi|57640891|ref|YP_183369.1| - 0.027 13.6 0.2 0.04 13.0 0.0 1.4 1 1 1 2 2 2 0 RNA polymerase Rpc34 subunit HTH_11 PF08279.7 gi|57640891|ref|YP_183369.1| - 0.03 13.9 0.2 0.043 13.4 0.1 1.3 1 0 0 1 1 1 0 HTH domain RepL PF05732.6 gi|57640891|ref|YP_183369.1| - 0.042 13.0 0.0 0.051 12.7 0.0 1.1 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) Rrf2 PF02082.15 gi|57640891|ref|YP_183369.1| - 0.052 13.6 0.0 0.068 13.2 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator HTH_29 PF13551.1 gi|57640891|ref|YP_183369.1| - 0.053 13.6 0.0 0.066 13.3 0.0 1.1 1 0 0 1 1 1 0 Winged helix-turn helix Ribosomal_S8 PF00410.14 gi|57640891|ref|YP_183369.1| - 0.057 13.2 0.0 0.063 13.1 0.0 1.1 1 0 0 1 1 1 0 Ribosomal protein S8 HTH_45 PF14947.1 gi|57640891|ref|YP_183369.1| - 0.057 13.2 0.1 0.11 12.3 0.0 1.5 2 0 0 2 2 1 0 Winged helix-turn-helix TFIIE_alpha PF02002.12 gi|57640891|ref|YP_183369.1| - 0.083 12.3 0.3 0.11 12.0 0.2 1.1 1 0 0 1 1 1 0 TFIIE alpha subunit HTH_27 PF13463.1 gi|57640891|ref|YP_183369.1| - 0.084 13.2 0.1 0.17 12.2 0.0 1.6 2 0 0 2 2 2 0 Winged helix DNA-binding domain EndIII_4Fe-2S PF10576.4 gi|57640891|ref|YP_183369.1| - 0.11 12.6 1.5 0.18 12.0 1.0 1.3 1 0 0 1 1 1 0 Iron-sulfur binding domain of endonuclease III HTH_AsnC-type PF13404.1 gi|57640891|ref|YP_183369.1| - 0.12 11.9 0.0 0.2 11.2 0.0 1.4 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_5 PF01022.15 gi|57640891|ref|YP_183369.1| - 0.12 12.0 0.1 0.19 11.3 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family FeoB_N PF02421.13 gi|57640892|ref|YP_183370.1| - 1.4e-65 219.3 0.8 2.2e-65 218.7 0.5 1.3 1 0 0 1 1 1 1 Ferrous iron transport protein B Gate PF07670.9 gi|57640892|ref|YP_183370.1| - 1.2e-46 157.1 17.7 4.8e-29 100.4 2.0 3.1 3 0 0 3 3 3 2 Nucleoside recognition FeoB_C PF07664.7 gi|57640892|ref|YP_183370.1| - 9.3e-19 66.6 1.6 9.3e-19 66.6 1.1 2.6 3 0 0 3 3 2 1 Ferrous iron transport protein B C terminus MMR_HSR1 PF01926.18 gi|57640892|ref|YP_183370.1| - 5.7e-17 61.7 0.3 1.6e-16 60.3 0.1 1.7 2 0 0 2 2 2 1 50S ribosome-binding GTPase SRPRB PF09439.5 gi|57640892|ref|YP_183370.1| - 9.9e-06 24.8 0.0 2e-05 23.8 0.0 1.4 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit GTP_EFTU PF00009.22 gi|57640892|ref|YP_183370.1| - 2.8e-05 23.6 0.3 0.00045 19.7 0.2 2.4 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain PduV-EutP PF10662.4 gi|57640892|ref|YP_183370.1| - 0.0013 18.2 0.1 0.0036 16.8 0.0 1.8 1 1 0 1 1 1 1 Ethanolamine utilisation - propanediol utilisation Ras PF00071.17 gi|57640892|ref|YP_183370.1| - 0.0019 17.6 0.1 0.0073 15.7 0.0 1.9 1 1 0 1 1 1 1 Ras family ATP_bind_1 PF03029.12 gi|57640892|ref|YP_183370.1| - 0.0092 15.5 0.2 0.13 11.8 0.0 2.0 1 1 1 2 2 2 1 Conserved hypothetical ATP binding protein AIG1 PF04548.11 gi|57640892|ref|YP_183370.1| - 0.01 14.9 0.1 0.016 14.3 0.0 1.2 1 0 0 1 1 1 0 AIG1 family ArgK PF03308.11 gi|57640892|ref|YP_183370.1| - 0.034 12.9 0.2 1.6 7.4 0.0 2.3 2 0 0 2 2 2 0 ArgK protein Miro PF08477.8 gi|57640892|ref|YP_183370.1| - 0.047 14.1 0.0 0.11 13.0 0.0 1.6 1 0 0 1 1 1 0 Miro-like protein FeoA PF04023.9 gi|57640893|ref|YP_183371.1| - 5.3e-20 71.1 0.2 5.8e-20 71.0 0.1 1.0 1 0 0 1 1 1 1 FeoA domain Tic20 PF09685.5 gi|57640894|ref|YP_183372.1| - 6.2e-19 67.9 4.0 7.6e-19 67.7 2.7 1.0 1 0 0 1 1 1 1 Tic20-like protein PepSY_TM_2 PF13703.1 gi|57640894|ref|YP_183372.1| - 8.2 6.6 7.5 24 5.1 0.0 2.2 1 1 1 2 2 2 0 PepSY-associated TM helix QueC PF06508.8 gi|57640895|ref|YP_183373.1| - 2e-08 33.7 0.0 1.7e-07 30.7 0.0 2.1 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC ThiI PF02568.9 gi|57640895|ref|YP_183373.1| - 4.4e-07 29.5 0.0 1.6e-06 27.6 0.0 2.0 1 1 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) ATP_bind_4 PF01902.12 gi|57640895|ref|YP_183373.1| - 0.00012 21.4 0.1 0.00062 19.1 0.0 2.1 2 0 0 2 2 2 1 ATP-binding region tRNA_Me_trans PF03054.11 gi|57640895|ref|YP_183373.1| - 0.00065 18.3 0.0 0.0011 17.6 0.0 1.4 1 0 0 1 1 1 1 tRNA methyl transferase ATP_bind_3 PF01171.15 gi|57640895|ref|YP_183373.1| - 0.0017 17.9 0.0 0.014 14.9 0.0 2.2 1 1 0 1 1 1 1 PP-loop family Asn_synthase PF00733.16 gi|57640895|ref|YP_183373.1| - 0.0052 16.3 0.0 0.0089 15.5 0.0 1.3 1 0 0 1 1 1 1 Asparagine synthase PAPS_reduct PF01507.14 gi|57640895|ref|YP_183373.1| - 0.006 16.4 0.0 0.023 14.5 0.0 2.1 1 1 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family NAD_synthase PF02540.12 gi|57640895|ref|YP_183373.1| - 0.0078 15.1 0.0 0.013 14.4 0.0 1.3 1 0 0 1 1 1 1 NAD synthase Fer4_18 PF13746.1 gi|57640895|ref|YP_183373.1| - 0.091 13.1 0.1 0.75 10.2 0.0 2.1 2 0 0 2 2 2 0 4Fe-4S dicluster domain AIRS_C PF02769.17 gi|57640896|ref|YP_183374.1| - 1.8e-14 54.0 0.0 2.7e-14 53.4 0.0 1.2 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|57640896|ref|YP_183374.1| - 5.4e-10 39.3 0.0 1.8e-09 37.6 0.0 1.9 2 0 0 2 2 2 1 AIR synthase related protein, N-terminal domain NTP_transf_2 PF01909.18 gi|57640897|ref|YP_183375.1| - 6.3e-12 45.6 2.1 7.8e-12 45.3 1.4 1.2 1 0 0 1 1 1 1 Nucleotidyltransferase domain Nuc-transf PF10127.4 gi|57640897|ref|YP_183375.1| - 0.0052 16.1 0.0 0.0052 16.1 0.0 1.1 1 0 0 1 1 1 1 Predicted nucleotidyltransferase DUF294 PF03445.8 gi|57640897|ref|YP_183375.1| - 0.15 11.6 0.0 0.16 11.5 0.0 1.2 1 0 0 1 1 1 0 Putative nucleotidyltransferase DUF294 HEPN PF05168.9 gi|57640898|ref|YP_183376.1| - 5.8e-32 110.0 2.6 6.7e-32 109.8 1.8 1.0 1 0 0 1 1 1 1 HEPN domain PaREP1 PF05942.6 gi|57640898|ref|YP_183376.1| - 0.085 12.7 0.9 0.18 11.6 0.5 1.6 1 1 1 2 2 2 0 Archaeal PaREP1/PaREP8 family eRF1_1 PF03463.10 gi|57640899|ref|YP_183377.1| - 1.5e-33 115.1 0.1 2.9e-33 114.2 0.1 1.5 1 0 0 1 1 1 1 eRF1 domain 1 eRF1_2 PF03464.10 gi|57640899|ref|YP_183377.1| - 3e-30 105.2 1.0 5.7e-30 104.3 0.7 1.5 1 0 0 1 1 1 1 eRF1 domain 2 eRF1_3 PF03465.10 gi|57640899|ref|YP_183377.1| - 2.9e-25 88.7 1.6 2.9e-25 88.7 1.1 2.0 2 0 0 2 2 2 1 eRF1 domain 3 SHD1 PF03983.7 gi|57640899|ref|YP_183377.1| - 0.026 14.1 0.0 0.069 12.8 0.0 1.7 1 0 0 1 1 1 0 SLA1 homology domain 1, SHD1 RasGAP_C PF03836.10 gi|57640899|ref|YP_183377.1| - 0.097 12.3 0.6 16 5.1 0.0 2.8 3 0 0 3 3 3 0 RasGAP C-terminus DUF2183 PF09949.4 gi|57640899|ref|YP_183377.1| - 0.11 12.4 0.0 0.81 9.6 0.0 2.3 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2183) Plasmid_stabil PF05016.9 gi|57640900|ref|YP_183378.1| - 3.8e-10 40.0 0.2 4.2e-10 39.8 0.1 1.1 1 0 0 1 1 1 1 Plasmid stabilisation system protein Gp49 PF05973.9 gi|57640900|ref|YP_183378.1| - 0.0022 17.9 0.2 0.0031 17.4 0.1 1.2 1 0 0 1 1 1 1 Phage derived protein Gp49-like (DUF891) DUF1128 PF06569.6 gi|57640901|ref|YP_183379.1| - 0.0042 16.7 0.4 0.0046 16.6 0.3 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1128) Tmemb_cc2 PF10267.4 gi|57640901|ref|YP_183379.1| - 0.0085 14.7 4.8 0.0093 14.5 3.3 1.0 1 0 0 1 1 1 1 Predicted transmembrane and coiled-coil 2 protein CENP-F_leu_zip PF10473.4 gi|57640901|ref|YP_183379.1| - 0.013 15.3 3.9 0.015 15.1 2.7 1.0 1 0 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Mnd1 PF03962.10 gi|57640901|ref|YP_183379.1| - 0.017 14.8 0.2 0.017 14.7 0.2 1.0 1 0 0 1 1 1 0 Mnd1 family DbpA PF03880.10 gi|57640901|ref|YP_183379.1| - 0.019 14.6 0.0 0.024 14.2 0.0 1.3 1 1 0 1 1 1 0 DbpA RNA binding domain DUF2666 PF10869.3 gi|57640901|ref|YP_183379.1| - 0.032 14.2 0.7 0.038 14.0 0.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2666) Sec63 PF02889.11 gi|57640901|ref|YP_183379.1| - 0.034 13.3 0.2 0.037 13.2 0.1 1.0 1 0 0 1 1 1 0 Sec63 Brl domain HCaRG PF07258.9 gi|57640901|ref|YP_183379.1| - 0.048 13.2 0.1 0.071 12.6 0.1 1.4 1 1 0 1 1 1 0 HCaRG protein DUF4201 PF13870.1 gi|57640901|ref|YP_183379.1| - 0.064 12.6 1.9 0.071 12.5 1.3 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4201) Laminin_II PF06009.7 gi|57640901|ref|YP_183379.1| - 0.073 12.8 0.0 0.083 12.6 0.0 1.0 1 0 0 1 1 1 0 Laminin Domain II DUF641 PF04859.7 gi|57640901|ref|YP_183379.1| - 0.11 12.2 0.3 0.12 12.1 0.2 1.0 1 0 0 1 1 1 0 Plant protein of unknown function (DUF641) Post_transc_reg PF13797.1 gi|57640901|ref|YP_183379.1| - 0.12 11.9 0.4 0.13 11.8 0.3 1.1 1 0 0 1 1 1 0 Post-transcriptional regulator ORF6C PF10552.4 gi|57640901|ref|YP_183379.1| - 0.16 11.7 0.5 0.21 11.3 0.3 1.3 1 1 0 1 1 1 0 ORF6C domain DUF947 PF06102.7 gi|57640901|ref|YP_183379.1| - 0.2 11.4 1.2 0.21 11.3 0.9 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF947) SRP54_N PF02881.14 gi|57640901|ref|YP_183379.1| - 0.23 11.6 0.3 0.23 11.6 0.2 2.2 2 1 1 3 3 3 0 SRP54-type protein, helical bundle domain IncA PF04156.9 gi|57640901|ref|YP_183379.1| - 0.24 10.9 4.7 0.27 10.8 3.3 1.0 1 0 0 1 1 1 0 IncA protein TcdB_N PF12918.2 gi|57640901|ref|YP_183379.1| - 0.3 11.2 2.8 1.8 8.7 0.1 2.1 1 1 1 2 2 2 0 TcdB toxin N-terminal helical domain DUF4200 PF13863.1 gi|57640901|ref|YP_183379.1| - 0.71 9.8 5.2 2.5 8.0 0.6 1.8 1 1 0 2 2 2 0 Domain of unknown function (DUF4200) DivIC PF04977.10 gi|57640901|ref|YP_183379.1| - 0.93 9.0 3.9 1.7 8.1 0.5 2.0 1 1 1 2 2 2 0 Septum formation initiator Peptidase_M24 PF00557.19 gi|57640902|ref|YP_183380.1| - 1.8e-67 226.9 2.5 2.4e-67 226.5 1.7 1.2 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.13 gi|57640902|ref|YP_183380.1| - 1.8e-24 86.7 0.0 3.4e-24 85.8 0.0 1.5 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain ATP-cone PF03477.11 gi|57640902|ref|YP_183380.1| - 0.058 13.8 2.3 0.23 11.9 0.0 2.3 2 0 0 2 2 2 0 ATP cone domain HAD_2 PF13419.1 gi|57640903|ref|YP_183381.1| - 3.7e-08 33.7 0.1 5.2e-08 33.2 0.1 1.2 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|57640903|ref|YP_183381.1| - 0.0021 18.4 0.1 0.019 15.3 0.1 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.1 gi|57640903|ref|YP_183381.1| - 0.0043 16.9 0.0 2.7 7.9 0.0 2.3 2 0 0 2 2 2 2 Haloacid dehalogenase-like hydrolase DUF2183 PF09949.4 gi|57640903|ref|YP_183381.1| - 0.023 14.6 0.0 0.06 13.2 0.0 1.7 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2183) HAD PF12710.2 gi|57640903|ref|YP_183381.1| - 0.039 14.1 0.1 0.052 13.7 0.1 1.3 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|57640903|ref|YP_183381.1| - 0.11 12.1 0.0 0.4 10.2 0.0 1.8 2 0 0 2 2 2 0 haloacid dehalogenase-like hydrolase Ribosomal_L35Ae PF01247.13 gi|57640904|ref|YP_183382.1| - 1.5e-17 63.1 0.0 2.3e-17 62.5 0.0 1.3 1 1 0 1 1 1 1 Ribosomal protein L35Ae RimM PF01782.13 gi|57640904|ref|YP_183382.1| - 8.8e-08 31.9 0.5 0.0023 17.8 0.1 2.1 2 0 0 2 2 2 2 RimM N-terminal domain TRM PF02005.11 gi|57640905|ref|YP_183383.1| - 1.5e-121 405.8 0.0 1.7e-121 405.6 0.0 1.0 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Methyltransf_16 PF10294.4 gi|57640905|ref|YP_183383.1| - 0.00094 18.6 0.0 0.0014 18.0 0.0 1.2 1 0 0 1 1 1 1 Putative methyltransferase Methyltransf_26 PF13659.1 gi|57640905|ref|YP_183383.1| - 0.05 13.6 0.0 0.22 11.5 0.0 2.0 2 1 0 2 2 2 0 Methyltransferase domain VIT1 PF01988.14 gi|57640906|ref|YP_183384.1| - 1.2e-51 175.2 6.2 1.2e-51 175.2 4.3 1.6 2 0 0 2 2 2 1 VIT family Rubrerythrin PF02915.12 gi|57640906|ref|YP_183384.1| - 7.7e-09 35.9 7.9 1.7e-08 34.9 5.5 1.6 1 0 0 1 1 1 1 Rubrerythrin Band_3_cyto PF07565.8 gi|57640906|ref|YP_183384.1| - 0.035 13.6 0.0 0.064 12.7 0.0 1.4 1 0 0 1 1 1 0 Band 3 cytoplasmic domain Colicin PF01024.14 gi|57640906|ref|YP_183384.1| - 0.054 13.0 1.0 3.1 7.3 0.0 2.4 2 0 0 2 2 2 0 Colicin pore forming domain Ferritin_2 PF13668.1 gi|57640906|ref|YP_183384.1| - 0.063 13.2 1.2 0.93 9.4 0.1 2.2 1 1 1 2 2 2 0 Ferritin-like domain PolyA_pol_RNAbd PF12627.2 gi|57640906|ref|YP_183384.1| - 0.1 12.2 4.2 0.19 11.2 0.6 2.5 2 0 0 2 2 2 0 Probable RNA and SrmB- binding site of polymerase A PIN PF01850.16 gi|57640907|ref|YP_183385.1| - 2.2e-11 44.1 0.3 2.5e-11 43.9 0.2 1.0 1 0 0 1 1 1 1 PIN domain CcdA PF07362.7 gi|57640908|ref|YP_183386.1| - 0.004 17.0 0.3 0.0051 16.6 0.2 1.2 1 0 0 1 1 1 1 Post-segregation antitoxin CcdA DUF2458 PF10454.4 gi|57640908|ref|YP_183386.1| - 0.037 13.9 0.2 0.037 13.9 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2458) MatE PF01554.13 gi|57640909|ref|YP_183387.1| - 1.9e-79 264.9 30.2 7.2e-43 146.0 3.4 2.6 3 0 0 3 3 3 2 MatE MVIN PF03023.9 gi|57640909|ref|YP_183387.1| - 2.2e-13 49.4 22.7 4e-13 48.6 7.9 2.1 1 1 1 2 2 2 2 MviN-like protein Polysacc_synt_C PF14667.1 gi|57640909|ref|YP_183387.1| - 4.7e-07 29.7 4.9 4.7e-07 29.7 3.4 4.4 2 2 2 4 4 4 2 Polysaccharide biosynthesis C-terminal domain Ribosomal_L37e PF01907.14 gi|57640910|ref|YP_183388.1| - 2.8e-22 78.2 13.8 3.4e-22 77.9 9.6 1.1 1 0 0 1 1 1 1 Ribosomal protein L37e DZR PF12773.2 gi|57640910|ref|YP_183388.1| - 0.0036 17.0 1.0 0.0044 16.8 0.7 1.2 1 0 0 1 1 1 1 Double zinc ribbon HypA PF01155.14 gi|57640910|ref|YP_183388.1| - 0.24 11.1 0.9 0.3 10.7 0.7 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family DNA_RNApol_7kD PF03604.8 gi|57640910|ref|YP_183388.1| - 1.1 8.7 7.6 0.22 11.0 0.9 2.2 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit LSM PF01423.17 gi|57640911|ref|YP_183389.1| - 7.4e-16 57.4 0.4 8.1e-16 57.3 0.3 1.0 1 0 0 1 1 1 1 LSM domain Alpha-amylase PF00128.19 gi|57640912|ref|YP_183390.1| - 7.6e-67 225.9 0.0 1.1e-66 225.4 0.0 1.2 1 0 0 1 1 1 1 Alpha amylase, catalytic domain DUF3459 PF11941.3 gi|57640912|ref|YP_183390.1| - 0.00038 20.5 0.0 0.001 19.1 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF3459) Glyco_hydro_70 PF02324.11 gi|57640912|ref|YP_183390.1| - 0.066 10.9 0.0 0.1 10.3 0.0 1.2 1 0 0 1 1 1 0 Glycosyl hydrolase family 70 DUF4434 PF14488.1 gi|57640912|ref|YP_183390.1| - 0.11 12.1 0.0 0.26 10.9 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4434) SoxE PF06525.6 gi|57640912|ref|YP_183390.1| - 0.15 11.3 1.3 0.35 10.1 0.9 1.6 1 0 0 1 1 1 0 Sulfocyanin (SoxE) Alpha_GJ PF03229.8 gi|57640912|ref|YP_183390.1| - 0.18 12.1 3.1 0.3 11.4 2.2 1.2 1 0 0 1 1 1 0 Alphavirus glycoprotein J DUF3416 PF11896.3 gi|57640912|ref|YP_183390.1| - 0.26 11.1 1.4 0.59 10.0 0.2 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF3416) DUF3680 PF12441.3 gi|57640912|ref|YP_183390.1| - 8.4 6.3 6.5 3.8 7.4 0.1 3.3 4 0 0 4 4 4 0 Protein of unknown function (DUF3680) tRNA-synt_2b PF00587.20 gi|57640913|ref|YP_183391.1| - 5.5e-59 198.6 1.5 8.9e-59 197.9 1.1 1.4 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|57640913|ref|YP_183391.1| - 1.7e-23 82.3 1.5 4.9e-23 80.9 0.1 2.3 2 0 0 2 2 2 1 Anticodon binding domain tRNA-synt_2 PF00152.15 gi|57640913|ref|YP_183391.1| - 1.7e-05 23.8 1.4 0.055 12.2 0.1 2.5 2 0 0 2 2 2 2 tRNA synthetases class II (D, K and N) DNA_RNApol_7kD PF03604.8 gi|57640913|ref|YP_183391.1| - 0.013 14.9 1.8 1.2 8.6 0.2 2.5 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit Zn-ribbon_8 PF09723.5 gi|57640913|ref|YP_183391.1| - 0.02 14.8 0.2 5 7.1 0.0 2.4 2 0 0 2 2 2 0 Zinc ribbon domain zinc_ribbon_2 PF13240.1 gi|57640913|ref|YP_183391.1| - 0.056 12.9 0.4 5 6.7 0.0 2.5 2 0 0 2 2 2 0 zinc-ribbon domain tRNA-synt_2d PF01409.15 gi|57640913|ref|YP_183391.1| - 0.059 12.5 0.0 0.35 10.0 0.0 2.2 1 1 0 1 1 1 0 tRNA synthetases class II core domain (F) zinc_ribbon_4 PF13717.1 gi|57640913|ref|YP_183391.1| - 0.068 12.8 0.7 4.6 7.0 0.0 2.8 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|57640913|ref|YP_183391.1| - 0.1 12.1 1.3 4.8 6.8 0.1 2.8 2 0 0 2 2 2 0 zinc-ribbon domain zf-H2C2_2 PF13465.1 gi|57640913|ref|YP_183391.1| - 1.3 9.4 3.6 6.7 7.1 0.1 3.1 3 0 0 3 3 3 0 Zinc-finger double domain TauE PF01925.14 gi|57640914|ref|YP_183392.1| - 4.7e-58 196.4 29.6 5.4e-58 196.2 20.5 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE MarC PF01914.12 gi|57640914|ref|YP_183392.1| - 0.0004 19.5 5.2 0.0036 16.4 0.1 2.3 2 0 0 2 2 2 2 MarC family integral membrane protein YajC PF02699.10 gi|57640914|ref|YP_183392.1| - 0.018 14.7 1.0 0.053 13.2 0.0 2.1 2 0 0 2 2 2 0 Preprotein translocase subunit DUF2157 PF09925.4 gi|57640914|ref|YP_183392.1| - 2.6 7.6 13.5 3.4 7.2 4.1 2.5 2 1 0 2 2 2 0 Predicted membrane protein (DUF2157) YoqO PF14037.1 gi|57640915|ref|YP_183393.1| - 0.03 14.4 2.9 0.11 12.5 0.3 2.4 2 0 0 2 2 2 0 YoqO-like protein DUF2304 PF10066.4 gi|57640915|ref|YP_183393.1| - 0.45 10.3 8.6 0.25 11.2 2.6 2.4 2 1 0 2 2 2 0 Uncharacterized conserved protein (DUF2304) DUF3054 PF11255.3 gi|57640915|ref|YP_183393.1| - 0.99 9.2 5.6 1.2 8.9 2.4 2.3 2 1 1 3 3 3 0 Protein of unknown function (DUF3054) UPF0020 PF01170.13 gi|57640916|ref|YP_183394.1| - 1.2e-35 122.7 0.0 1.7e-35 122.2 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_26 PF13659.1 gi|57640916|ref|YP_183394.1| - 3.2e-19 69.0 0.0 5.2e-19 68.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|57640916|ref|YP_183394.1| - 5.5e-11 42.2 0.0 8.6e-11 41.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain THUMP PF02926.12 gi|57640916|ref|YP_183394.1| - 1.3e-09 38.1 0.0 2.2e-09 37.3 0.0 1.4 1 0 0 1 1 1 1 THUMP domain Methyltransf_15 PF09445.5 gi|57640916|ref|YP_183394.1| - 2.3e-07 30.5 0.0 3.7e-07 29.8 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_11 PF08241.7 gi|57640916|ref|YP_183394.1| - 4.8e-07 30.1 0.0 1.1e-06 28.9 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|57640916|ref|YP_183394.1| - 5.1e-07 30.2 0.0 1.1e-06 29.1 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain N6_Mtase PF02384.11 gi|57640916|ref|YP_183394.1| - 9.8e-07 28.1 0.0 1.4e-06 27.5 0.0 1.3 1 0 0 1 1 1 1 N-6 DNA Methylase N6_N4_Mtase PF01555.13 gi|57640916|ref|YP_183394.1| - 2.9e-06 26.9 0.0 0.00047 19.7 0.0 2.2 2 0 0 2 2 2 1 DNA methylase Cons_hypoth95 PF03602.10 gi|57640916|ref|YP_183394.1| - 2.9e-06 26.7 0.0 1.4e-05 24.5 0.0 1.8 2 0 0 2 2 2 1 Conserved hypothetical protein 95 Methyltransf_25 PF13649.1 gi|57640916|ref|YP_183394.1| - 0.00023 21.4 0.0 0.00074 19.8 0.0 1.8 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|57640916|ref|YP_183394.1| - 0.0019 18.6 0.0 0.0073 16.7 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|57640916|ref|YP_183394.1| - 0.0053 15.8 0.0 0.0098 15.0 0.0 1.4 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.1 gi|57640916|ref|YP_183394.1| - 0.0085 15.8 0.0 0.056 13.1 0.0 2.3 2 1 0 2 2 2 1 Methyltransferase domain DoxX PF07681.7 gi|57640917|ref|YP_183395.1| - 0.32 11.4 12.6 2.9 8.3 5.1 2.1 2 0 0 2 2 2 0 DoxX T2SM PF04612.7 gi|57640917|ref|YP_183395.1| - 0.41 10.4 0.0 0.41 10.4 0.0 1.7 2 0 0 2 2 2 0 Type II secretion system (T2SS), protein M tRNA-synt_2c PF01411.14 gi|57640919|ref|YP_183397.1| - 3.6e-12 45.3 0.0 4.9e-12 44.9 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (A) tRNA_SAD PF07973.9 gi|57640919|ref|YP_183397.1| - 2.1e-09 37.0 0.3 3.9e-09 36.2 0.2 1.4 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain SDF PF00375.13 gi|57640921|ref|YP_183399.1| - 4.9e-128 427.2 36.9 5.5e-128 427.0 25.6 1.0 1 0 0 1 1 1 1 Sodium:dicarboxylate symporter family DUF4448 PF14610.1 gi|57640921|ref|YP_183399.1| - 0.52 9.7 0.0 0.52 9.7 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF4448) BPL_LplA_LipB PF03099.14 gi|57640922|ref|YP_183400.1| - 6.5e-23 81.1 0.0 1.7e-22 79.7 0.0 1.6 2 0 0 2 2 2 1 Biotin/lipoate A/B protein ligase family BPL_C PF02237.12 gi|57640922|ref|YP_183400.1| - 4.1e-08 32.7 3.6 6.6e-08 32.1 1.8 1.9 2 0 0 2 2 2 1 Biotin protein ligase C terminal domain HNH_4 PF13395.1 gi|57640923|ref|YP_183401.1| - 0.049 13.2 0.0 0.087 12.4 0.0 1.3 1 0 0 1 1 1 0 HNH endonuclease DeoC PF01791.4 gi|57640924|ref|YP_183402.1| - 9.9e-32 110.1 0.0 1.2e-31 109.8 0.0 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase Peripla_BP_4 PF13407.1 gi|57640924|ref|YP_183402.1| - 0.012 15.0 0.2 0.02 14.2 0.1 1.3 1 0 0 1 1 1 0 Periplasmic binding protein domain PucR PF07905.6 gi|57640924|ref|YP_183402.1| - 0.08 12.5 0.1 5.4 6.6 0.0 2.6 3 1 0 3 3 3 0 Purine catabolism regulatory protein-like family PYC_OADA PF02436.13 gi|57640925|ref|YP_183403.1| - 2.7e-66 222.7 0.1 6e-66 221.6 0.0 1.6 2 0 0 2 2 2 1 Conserved carboxylase domain HMGL-like PF00682.14 gi|57640925|ref|YP_183403.1| - 1.7e-40 139.1 0.0 2.4e-40 138.6 0.0 1.1 1 0 0 1 1 1 1 HMGL-like Biotin_lipoyl PF00364.17 gi|57640925|ref|YP_183403.1| - 2e-25 88.1 2.7 4.7e-25 87.0 1.9 1.7 1 0 0 1 1 1 1 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.1 gi|57640925|ref|YP_183403.1| - 3.5e-15 55.4 0.4 2.3e-06 27.1 0.1 2.5 1 1 1 2 2 2 2 Biotin-lipoyl like HlyD PF00529.15 gi|57640925|ref|YP_183403.1| - 2.2e-08 33.7 0.6 0.0016 17.8 0.1 2.2 1 1 1 2 2 2 2 HlyD family secretion protein HlyD_2 PF12700.2 gi|57640925|ref|YP_183403.1| - 4.4e-07 29.3 0.3 0.0023 17.1 0.0 2.3 1 1 1 2 2 2 2 HlyD family secretion protein HlyD_3 PF13437.1 gi|57640925|ref|YP_183403.1| - 5.1e-07 29.9 0.2 0.0015 18.8 0.0 2.5 2 0 0 2 2 2 2 HlyD family secretion protein PTS_EIIA_1 PF00358.15 gi|57640925|ref|YP_183403.1| - 0.0032 17.0 0.1 0.52 9.8 0.0 2.6 1 1 1 2 2 2 1 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 RnfC_N PF13375.1 gi|57640925|ref|YP_183403.1| - 0.016 14.9 0.1 0.16 11.6 0.1 2.6 1 1 0 1 1 1 0 RnfC Barrel sandwich hybrid domain NQRA PF05896.6 gi|57640925|ref|YP_183403.1| - 0.084 12.0 0.3 1.1 8.4 0.2 2.0 1 1 1 2 2 2 0 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) NanE PF04131.9 gi|57640925|ref|YP_183403.1| - 0.089 11.7 0.1 0.17 10.7 0.0 1.5 1 0 0 1 1 1 0 Putative N-acetylmannosamine-6-phosphate epimerase GCV_H PF01597.14 gi|57640925|ref|YP_183403.1| - 0.12 12.0 1.6 0.12 12.0 0.2 1.7 2 0 0 2 2 2 0 Glycine cleavage H-protein CstA PF02554.9 gi|57640926|ref|YP_183404.1| - 5.3e-130 433.4 28.3 5.3e-130 433.4 19.6 2.0 2 0 0 2 2 2 1 Carbon starvation protein CstA DUF4161 PF13722.1 gi|57640926|ref|YP_183404.1| - 3e-34 118.0 13.4 3e-34 118.0 9.3 3.1 2 1 0 2 2 2 1 C-terminal domain on CstA (DUF4161) ArsA_ATPase PF02374.10 gi|57640929|ref|YP_183407.1| - 1.1e-74 251.2 0.2 1.7e-74 250.6 0.2 1.3 1 1 0 1 1 1 1 Anion-transporting ATPase CbiA PF01656.18 gi|57640929|ref|YP_183407.1| - 1.8e-18 66.6 0.4 6.1e-17 61.6 0.3 2.1 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|57640929|ref|YP_183407.1| - 4.7e-06 26.6 0.4 4.7e-05 23.3 0.3 2.7 1 1 0 1 1 1 1 AAA domain Fer4_NifH PF00142.13 gi|57640929|ref|YP_183407.1| - 1.5e-05 24.3 0.0 6e-05 22.3 0.0 1.9 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family SRP54 PF00448.17 gi|57640929|ref|YP_183407.1| - 0.00022 20.7 0.1 0.00069 19.1 0.0 1.9 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain MipZ PF09140.6 gi|57640929|ref|YP_183407.1| - 0.00025 20.2 0.1 0.0034 16.5 0.0 2.2 1 1 1 2 2 2 1 ATPase MipZ PhoH PF02562.11 gi|57640929|ref|YP_183407.1| - 0.00028 20.1 0.5 0.0011 18.2 0.3 1.9 1 1 0 1 1 1 1 PhoH-like protein AAA_25 PF13481.1 gi|57640929|ref|YP_183407.1| - 0.00036 19.9 0.0 0.0009 18.6 0.0 1.7 1 1 0 1 1 1 1 AAA domain ATP_bind_1 PF03029.12 gi|57640929|ref|YP_183407.1| - 0.0026 17.3 0.7 0.024 14.1 0.1 2.4 2 1 0 2 2 2 1 Conserved hypothetical ATP binding protein NB-ARC PF00931.17 gi|57640929|ref|YP_183407.1| - 0.0033 16.3 0.3 0.062 12.1 0.0 2.2 2 0 0 2 2 2 1 NB-ARC domain AAA_30 PF13604.1 gi|57640929|ref|YP_183407.1| - 0.0079 15.7 0.0 0.015 14.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|57640929|ref|YP_183407.1| - 0.0091 15.4 0.0 0.013 15.0 0.0 1.3 1 0 0 1 1 1 1 AAA-like domain MobB PF03205.9 gi|57640929|ref|YP_183407.1| - 0.012 15.3 0.1 0.036 13.7 0.0 1.8 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_17 PF13207.1 gi|57640929|ref|YP_183407.1| - 0.014 16.2 0.7 0.2 12.5 0.4 2.5 1 1 0 1 1 1 0 AAA domain ArgK PF03308.11 gi|57640929|ref|YP_183407.1| - 0.065 11.9 0.0 0.13 11.0 0.0 1.4 1 0 0 1 1 1 0 ArgK protein YhjQ PF06564.7 gi|57640929|ref|YP_183407.1| - 0.15 11.4 0.0 0.29 10.4 0.0 1.4 1 0 0 1 1 1 0 YhjQ protein DUF59 PF01883.14 gi|57640930|ref|YP_183408.1| - 3e-07 30.3 0.4 5.9e-07 29.3 0.3 1.6 1 1 0 1 1 1 1 Domain of unknown function DUF59 PRP4 PF08799.6 gi|57640930|ref|YP_183408.1| - 0.091 12.0 0.0 0.19 11.0 0.0 1.5 1 0 0 1 1 1 0 pre-mRNA processing factor 4 (PRP4) like Prefoldin PF02996.12 gi|57640931|ref|YP_183409.1| - 0.087 12.4 0.1 0.24 11.0 0.1 1.8 2 0 0 2 2 2 0 Prefoldin subunit Antitoxin-MazE PF04014.13 gi|57640932|ref|YP_183410.1| - 1.7e-12 46.7 1.0 3.2e-12 45.8 0.7 1.5 1 0 0 1 1 1 1 Antidote-toxin recognition MazE WG_beta_rep PF14903.1 gi|57640932|ref|YP_183410.1| - 0.054 13.7 0.0 0.15 12.3 0.0 1.8 2 0 0 2 2 2 0 WG containing repeat SF3a60_bindingd PF12108.3 gi|57640932|ref|YP_183410.1| - 2.5 7.6 4.2 1 8.9 0.9 1.9 2 0 0 2 2 2 0 Splicing factor SF3a60 binding domain PIN PF01850.16 gi|57640933|ref|YP_183411.1| - 1.1e-24 87.0 2.0 1.2e-24 86.9 1.4 1.0 1 0 0 1 1 1 1 PIN domain Abhydrolase_6 PF12697.2 gi|57640934|ref|YP_183412.1| - 1.3e-36 126.6 0.0 1.5e-36 126.4 0.0 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|57640934|ref|YP_183412.1| - 1.8e-27 95.9 0.0 4.8e-27 94.5 0.0 1.6 1 1 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.3 gi|57640934|ref|YP_183412.1| - 8.3e-20 70.4 0.0 1.5e-19 69.6 0.0 1.4 1 0 0 1 1 1 1 Putative lysophospholipase Abhydrolase_1 PF00561.15 gi|57640934|ref|YP_183412.1| - 7.3e-17 61.6 0.0 2.5e-16 59.9 0.0 1.7 1 1 0 1 1 1 1 alpha/beta hydrolase fold Peptidase_S9 PF00326.16 gi|57640934|ref|YP_183412.1| - 5.7e-09 35.4 0.0 0.00011 21.5 0.0 2.4 2 1 0 2 2 2 2 Prolyl oligopeptidase family Abhydrolase_2 PF02230.11 gi|57640934|ref|YP_183412.1| - 4.1e-06 26.3 0.1 0.06 12.7 0.0 3.3 2 1 1 3 3 3 1 Phospholipase/Carboxylesterase FSH1 PF03959.8 gi|57640934|ref|YP_183412.1| - 0.00031 20.2 0.0 0.0011 18.4 0.0 1.7 1 1 0 1 1 1 1 Serine hydrolase (FSH1) AXE1 PF05448.7 gi|57640934|ref|YP_183412.1| - 0.0017 16.9 0.0 0.0063 15.0 0.0 1.8 2 0 0 2 2 2 1 Acetyl xylan esterase (AXE1) Ser_hydrolase PF06821.8 gi|57640934|ref|YP_183412.1| - 0.002 17.7 0.0 0.0041 16.7 0.0 1.5 1 0 0 1 1 1 1 Serine hydrolase Esterase PF00756.15 gi|57640934|ref|YP_183412.1| - 0.0025 17.2 0.0 0.0034 16.8 0.0 1.4 1 1 0 1 1 1 1 Putative esterase Thioesterase PF00975.15 gi|57640934|ref|YP_183412.1| - 0.0055 16.9 0.1 0.011 15.9 0.0 1.4 2 0 0 2 2 1 1 Thioesterase domain Abhydrolase_4 PF08386.5 gi|57640934|ref|YP_183412.1| - 0.007 16.2 0.0 0.021 14.7 0.0 1.8 1 0 0 1 1 1 1 TAP-like protein DLH PF01738.13 gi|57640934|ref|YP_183412.1| - 0.021 14.1 0.0 0.075 12.3 0.0 1.8 2 0 0 2 2 2 0 Dienelactone hydrolase family DUF3141 PF11339.3 gi|57640934|ref|YP_183412.1| - 0.064 11.5 0.0 0.2 9.9 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3141) UPF0227 PF05728.7 gi|57640934|ref|YP_183412.1| - 0.092 12.4 0.0 0.18 11.5 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0227) Tannase PF07519.6 gi|57640934|ref|YP_183412.1| - 0.1 11.2 0.0 1.5 7.4 0.0 2.0 2 0 0 2 2 2 0 Tannase and feruloyl esterase LCAT PF02450.10 gi|57640934|ref|YP_183412.1| - 0.14 11.0 0.0 0.19 10.6 0.0 1.2 1 0 0 1 1 1 0 Lecithin:cholesterol acyltransferase 7TM-7TMR_HD PF07698.6 gi|57640935|ref|YP_183413.1| - 0.044 13.2 0.1 0.057 12.8 0.1 1.2 1 1 0 1 1 1 0 7TM receptor with intracellular HD hydrolase Peptidase_MA_2 PF13485.1 gi|57640936|ref|YP_183414.1| - 9.9e-06 25.6 0.1 1.7e-05 24.8 0.1 1.4 1 0 0 1 1 1 1 Peptidase MA superfamily DUF2268 PF10026.4 gi|57640936|ref|YP_183414.1| - 0.063 12.6 0.3 0.15 11.4 0.2 1.6 1 1 0 1 1 1 0 Predicted Zn-dependent protease (DUF2268) Adenylsucc_synt PF00709.16 gi|57640937|ref|YP_183415.1| - 5.2e-93 311.9 1.1 3.5e-45 154.4 0.0 3.0 1 1 2 3 3 3 3 Adenylosuccinate synthetase Epimerase PF01370.16 gi|57640939|ref|YP_183417.1| - 1.7e-66 224.0 0.0 2e-66 223.7 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|57640939|ref|YP_183417.1| - 3.9e-22 78.2 0.0 5.1e-22 77.8 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.12 gi|57640939|ref|YP_183417.1| - 5.1e-19 68.2 0.0 6.1e-19 67.9 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.10 gi|57640939|ref|YP_183417.1| - 2.6e-17 62.6 0.9 4.2e-16 58.6 0.6 2.3 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.7 gi|57640939|ref|YP_183417.1| - 4.8e-16 58.4 0.0 1e-12 47.5 0.0 2.2 2 0 0 2 2 2 2 Male sterility protein NAD_binding_10 PF13460.1 gi|57640939|ref|YP_183417.1| - 4.4e-10 39.8 0.0 5.6e-10 39.5 0.0 1.2 1 0 0 1 1 1 1 NADH(P)-binding adh_short PF00106.20 gi|57640939|ref|YP_183417.1| - 3e-06 27.2 0.1 6.3e-06 26.2 0.1 1.6 1 1 0 1 1 1 1 short chain dehydrogenase NmrA PF05368.8 gi|57640939|ref|YP_183417.1| - 3.2e-05 23.2 0.2 6.5e-05 22.3 0.1 1.8 1 1 0 1 1 1 1 NmrA-like family TrkA_N PF02254.13 gi|57640939|ref|YP_183417.1| - 0.009 16.0 0.2 0.018 15.0 0.1 1.6 1 0 0 1 1 1 1 TrkA-N domain Epimerase_Csub PF13950.1 gi|57640939|ref|YP_183417.1| - 0.0098 15.8 0.0 0.017 15.0 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose 4-epimerase C-term subunit Saccharop_dh PF03435.13 gi|57640939|ref|YP_183417.1| - 0.011 14.7 0.1 0.019 13.9 0.1 1.3 1 0 0 1 1 1 0 Saccharopine dehydrogenase FtsZ_C PF12327.3 gi|57640939|ref|YP_183417.1| - 0.05 13.6 0.1 0.14 12.1 0.0 1.8 2 0 0 2 2 2 0 FtsZ family, C-terminal domain BATS PF06968.8 gi|57640939|ref|YP_183417.1| - 0.066 13.0 0.0 0.19 11.5 0.0 1.8 2 0 0 2 2 1 0 Biotin and Thiamin Synthesis associated domain Prefoldin PF02996.12 gi|57640940|ref|YP_183418.1| - 2.1e-29 101.6 8.8 2.7e-29 101.2 6.1 1.2 1 0 0 1 1 1 1 Prefoldin subunit Prefoldin_2 PF01920.15 gi|57640940|ref|YP_183418.1| - 2.3e-06 27.3 14.5 0.0005 19.7 2.6 2.3 2 0 0 2 2 2 2 Prefoldin subunit Prefoldin_3 PF13758.1 gi|57640940|ref|YP_183418.1| - 1.3e-05 24.8 0.5 2.7e-05 23.8 0.1 1.7 1 1 1 2 2 2 1 Prefoldin subunit Med9 PF07544.8 gi|57640940|ref|YP_183418.1| - 6.6e-05 22.5 0.2 6.6e-05 22.5 0.1 2.2 3 1 0 3 3 1 1 RNA polymerase II transcription mediator complex subunit 9 TraF_2 PF13729.1 gi|57640940|ref|YP_183418.1| - 0.0024 16.7 0.4 0.0037 16.1 0.0 1.4 2 0 0 2 2 2 1 F plasmid transfer operon, TraF, protein RINT1_TIP1 PF04437.8 gi|57640940|ref|YP_183418.1| - 0.0031 16.1 0.5 0.0037 15.8 0.4 1.1 1 0 0 1 1 1 1 RINT-1 / TIP-1 family HemX PF04375.9 gi|57640940|ref|YP_183418.1| - 0.0048 15.5 0.4 0.0048 15.5 0.3 1.9 2 0 0 2 2 2 1 HemX COG2 PF06148.6 gi|57640940|ref|YP_183418.1| - 0.0057 16.5 0.6 0.0057 16.5 0.5 1.7 2 0 0 2 2 2 1 COG (conserved oligomeric Golgi) complex component, COG2 SlyX PF04102.7 gi|57640940|ref|YP_183418.1| - 0.0059 16.9 2.6 0.0059 16.9 1.8 2.3 2 0 0 2 2 2 1 SlyX Tropomyosin_1 PF12718.2 gi|57640940|ref|YP_183418.1| - 0.0073 16.1 0.8 0.0073 16.1 0.6 2.1 2 0 0 2 2 2 1 Tropomyosin like Ax_dynein_light PF10211.4 gi|57640940|ref|YP_183418.1| - 0.0076 16.1 1.3 0.0076 16.1 0.9 1.8 2 0 0 2 2 2 1 Axonemal dynein light chain Spc7 PF08317.6 gi|57640940|ref|YP_183418.1| - 0.008 14.8 4.7 0.011 14.3 3.3 1.2 1 0 0 1 1 1 1 Spc7 kinetochore protein Uds1 PF15456.1 gi|57640940|ref|YP_183418.1| - 0.011 15.7 6.3 0.033 14.1 4.4 1.7 1 1 0 1 1 1 0 Up-regulated During Septation FimP PF09766.4 gi|57640940|ref|YP_183418.1| - 0.014 14.4 2.8 0.014 14.4 1.9 1.4 2 0 0 2 2 1 0 Fms-interacting protein DUF2570 PF10828.3 gi|57640940|ref|YP_183418.1| - 0.019 14.5 2.3 0.019 14.5 1.6 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2570) PEP-utilisers_N PF05524.8 gi|57640940|ref|YP_183418.1| - 0.021 14.6 1.3 0.021 14.6 0.9 2.1 2 1 0 2 2 2 0 PEP-utilising enzyme, N-terminal PspA_IM30 PF04012.7 gi|57640940|ref|YP_183418.1| - 0.023 14.0 5.8 0.023 14.0 4.0 2.1 2 0 0 2 2 2 0 PspA/IM30 family OmpH PF03938.9 gi|57640940|ref|YP_183418.1| - 0.023 14.6 3.7 0.023 14.6 2.6 2.1 2 0 0 2 2 2 0 Outer membrane protein (OmpH-like) FliD_C PF07195.7 gi|57640940|ref|YP_183418.1| - 0.026 13.8 0.2 0.043 13.1 0.1 1.3 1 0 0 1 1 1 0 Flagellar hook-associated protein 2 C-terminus Laminin_II PF06009.7 gi|57640940|ref|YP_183418.1| - 0.031 14.0 0.3 0.031 14.0 0.2 1.9 2 0 0 2 2 2 0 Laminin Domain II DUF1664 PF07889.7 gi|57640940|ref|YP_183418.1| - 0.034 13.9 1.9 0.084 12.6 0.2 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) DUF4164 PF13747.1 gi|57640940|ref|YP_183418.1| - 0.055 13.6 1.3 0.055 13.6 0.9 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4164) DUF4296 PF14129.1 gi|57640940|ref|YP_183418.1| - 0.057 13.5 1.0 0.37 10.9 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4296) DUF948 PF06103.6 gi|57640940|ref|YP_183418.1| - 0.12 12.2 0.4 0.12 12.2 0.3 2.2 2 1 0 2 2 2 0 Bacterial protein of unknown function (DUF948) RRF_GI PF12614.3 gi|57640940|ref|YP_183418.1| - 0.12 12.1 1.4 0.18 11.6 0.1 1.8 2 0 0 2 2 2 0 Ribosome recycling factor NPV_P10 PF05531.7 gi|57640940|ref|YP_183418.1| - 0.13 12.5 4.5 0.64 10.3 0.8 2.2 2 0 0 2 2 2 0 Nucleopolyhedrovirus P10 protein SNARE PF05739.14 gi|57640940|ref|YP_183418.1| - 0.15 11.7 2.2 0.45 10.2 0.4 2.3 2 0 0 2 2 2 0 SNARE domain TPR_2 PF07719.12 gi|57640940|ref|YP_183418.1| - 0.16 11.9 2.9 2.1 8.4 0.7 3.1 3 0 0 3 3 2 0 Tetratricopeptide repeat Reo_sigmaC PF04582.7 gi|57640940|ref|YP_183418.1| - 0.16 11.0 0.4 0.24 10.5 0.0 1.4 2 0 0 2 2 1 0 Reovirus sigma C capsid protein PRD PF00874.15 gi|57640940|ref|YP_183418.1| - 0.21 11.7 3.5 1.6 8.9 0.2 2.3 2 0 0 2 2 2 0 PRD domain Noelin-1 PF12308.3 gi|57640940|ref|YP_183418.1| - 0.24 11.2 4.5 1.3 8.8 0.5 2.1 2 0 0 2 2 2 0 Neurogenesis glycoprotein Dynamitin PF04912.9 gi|57640940|ref|YP_183418.1| - 0.35 9.6 7.5 0.061 12.1 0.6 2.0 2 0 0 2 2 2 0 Dynamitin V_ATPase_I PF01496.14 gi|57640940|ref|YP_183418.1| - 0.37 8.5 9.1 0.028 12.3 1.8 1.8 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family AAA_13 PF13166.1 gi|57640940|ref|YP_183418.1| - 0.37 9.1 8.2 0.017 13.6 1.2 1.7 2 0 0 2 2 2 0 AAA domain Lge1 PF11488.3 gi|57640940|ref|YP_183418.1| - 0.38 10.9 4.2 0.48 10.6 0.1 2.4 2 1 0 2 2 2 0 Transcriptional regulatory protein LGE1 IncA PF04156.9 gi|57640940|ref|YP_183418.1| - 0.39 10.2 14.9 0.035 13.6 2.6 2.1 2 0 0 2 2 2 0 IncA protein ATG16 PF08614.6 gi|57640940|ref|YP_183418.1| - 0.39 10.5 8.7 0.072 12.9 1.4 2.0 2 0 0 2 2 2 0 Autophagy protein 16 (ATG16) PhoU PF01895.14 gi|57640940|ref|YP_183418.1| - 0.44 11.0 3.0 0.26 11.7 0.3 1.8 2 1 0 2 2 1 0 PhoU domain CDC37_N PF03234.9 gi|57640940|ref|YP_183418.1| - 0.45 10.8 3.1 0.66 10.2 2.2 1.3 1 1 0 1 1 1 0 Cdc37 N terminal kinase binding Spc24 PF08286.6 gi|57640940|ref|YP_183418.1| - 0.49 10.0 8.9 0.19 11.4 1.7 2.1 2 0 0 2 2 2 0 Spc24 subunit of Ndc80 Glutaredoxin2_C PF04399.8 gi|57640940|ref|YP_183418.1| - 0.58 9.7 3.3 0.21 11.1 0.3 1.7 2 0 0 2 2 2 0 Glutaredoxin 2, C terminal domain Nup54 PF13874.1 gi|57640940|ref|YP_183418.1| - 0.72 9.5 7.7 0.14 11.8 1.6 2.0 2 0 0 2 2 2 0 Nucleoporin complex subunit 54 DUF16 PF01519.11 gi|57640940|ref|YP_183418.1| - 0.77 10.0 6.7 0.075 13.2 0.8 1.9 2 0 0 2 2 2 0 Protein of unknown function DUF16 Fib_alpha PF08702.5 gi|57640940|ref|YP_183418.1| - 0.86 9.7 4.0 0.57 10.3 1.6 1.6 1 1 0 1 1 1 0 Fibrinogen alpha/beta chain family Fzo_mitofusin PF04799.8 gi|57640940|ref|YP_183418.1| - 0.92 8.8 3.9 5.6 6.3 0.1 2.1 2 0 0 2 2 2 0 fzo-like conserved region TBPIP PF07106.8 gi|57640940|ref|YP_183418.1| - 1.1 8.7 9.7 0.35 10.4 1.4 2.2 2 0 0 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Mnd1 PF03962.10 gi|57640940|ref|YP_183418.1| - 1.2 8.7 9.5 0.49 10.0 1.9 2.2 2 0 0 2 2 2 0 Mnd1 family Syntaxin-6_N PF09177.6 gi|57640940|ref|YP_183418.1| - 1.2 9.5 6.0 0.62 10.5 0.9 2.1 2 0 0 2 2 2 0 Syntaxin 6, N-terminal Atg14 PF10186.4 gi|57640940|ref|YP_183418.1| - 1.3 7.8 7.2 2.2 7.1 5.0 1.4 1 1 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 DUF4047 PF13256.1 gi|57640940|ref|YP_183418.1| - 1.3 8.9 6.3 0.19 11.7 0.7 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4047) XhlA PF10779.4 gi|57640940|ref|YP_183418.1| - 1.4 8.9 4.7 3.1 7.7 3.2 1.6 1 0 0 1 1 1 0 Haemolysin XhlA bZIP_Maf PF03131.12 gi|57640940|ref|YP_183418.1| - 1.7 9.0 10.7 3.5 7.9 1.8 2.2 2 0 0 2 2 2 0 bZIP Maf transcription factor BMFP PF04380.8 gi|57640940|ref|YP_183418.1| - 1.9 8.6 9.7 6.3 7.0 0.9 3.2 1 1 1 2 2 2 0 Membrane fusogenic activity ERM PF00769.14 gi|57640940|ref|YP_183418.1| - 2.1 7.8 14.4 0.48 9.9 2.8 2.0 2 0 0 2 2 2 0 Ezrin/radixin/moesin family EAP30 PF04157.11 gi|57640940|ref|YP_183418.1| - 2.1 7.4 10.1 3.9 6.5 1.9 2.1 2 0 0 2 2 2 0 EAP30/Vps36 family APG6 PF04111.7 gi|57640940|ref|YP_183418.1| - 2.2 7.2 10.2 0.12 11.4 1.1 2.1 2 0 0 2 2 2 0 Autophagy protein Apg6 DUF4201 PF13870.1 gi|57640940|ref|YP_183418.1| - 2.5 7.4 10.1 0.69 9.3 1.7 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4201) Tektin PF03148.9 gi|57640940|ref|YP_183418.1| - 2.7 6.4 8.3 0.08 11.4 1.0 1.7 2 0 0 2 2 2 0 Tektin family Snf7 PF03357.16 gi|57640940|ref|YP_183418.1| - 2.7 7.3 10.7 0.16 11.3 2.5 2.1 2 0 0 2 2 2 0 Snf7 DUF4140 PF13600.1 gi|57640940|ref|YP_183418.1| - 4.7 7.7 14.8 0.87 10.0 3.2 2.7 2 2 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) DUF4618 PF15397.1 gi|57640940|ref|YP_183418.1| - 5 6.3 9.9 0.36 10.1 2.0 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4618) DUF724 PF05266.9 gi|57640940|ref|YP_183418.1| - 5.1 6.6 8.6 0.28 10.7 2.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF724) GAS PF13851.1 gi|57640940|ref|YP_183418.1| - 7.3 5.7 13.7 0.28 10.3 2.6 2.1 2 0 0 2 2 2 0 Growth-arrest specific micro-tubule binding FlxA PF14282.1 gi|57640940|ref|YP_183418.1| - 8.1 6.4 16.2 14 5.7 5.4 2.6 2 1 0 2 2 2 0 FlxA-like protein ADIP PF11559.3 gi|57640940|ref|YP_183418.1| - 8.2 6.3 14.0 1.3 8.8 3.2 2.1 2 0 0 2 2 2 0 Afadin- and alpha -actinin-Binding TPR_MLP1_2 PF07926.7 gi|57640940|ref|YP_183418.1| - 8.6 6.1 18.1 1.6 8.4 4.3 2.4 2 1 0 2 2 2 0 TPR/MLP1/MLP2-like protein BLOC1_2 PF10046.4 gi|57640940|ref|YP_183418.1| - 8.6 6.5 9.9 6.8 6.9 2.1 2.5 2 1 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Adeno_PIX PF03955.9 gi|57640940|ref|YP_183418.1| - 9 6.8 6.1 9.1 6.8 0.4 2.4 2 1 0 2 2 2 0 Adenovirus hexon-associated protein (IX) Seryl_tRNA_N PF02403.17 gi|57640940|ref|YP_183418.1| - 9.1 6.3 9.0 1.5 8.8 1.1 2.6 2 1 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain Pox_Ag35 PF03286.9 gi|57640941|ref|YP_183419.1| - 4.4 6.7 6.9 5.2 6.5 4.8 1.1 1 0 0 1 1 1 0 Pox virus Ag35 surface protein MFS_1 PF07690.11 gi|57640942|ref|YP_183420.1| - 1.5e-30 106.0 56.6 2.8e-24 85.5 29.5 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily BT1 PF03092.11 gi|57640942|ref|YP_183420.1| - 7.7e-05 21.5 6.7 0.00029 19.6 1.2 2.2 2 0 0 2 2 2 2 BT1 family MFS_1_like PF12832.2 gi|57640942|ref|YP_183420.1| - 0.001 18.7 3.2 0.0046 16.7 0.0 3.3 3 0 0 3 3 3 1 MFS_1 like family MFS_3 PF05977.8 gi|57640942|ref|YP_183420.1| - 0.015 13.4 16.4 0.079 11.0 1.4 2.1 2 0 0 2 2 2 0 Transmembrane secretion effector Fe-ADH PF00465.14 gi|57640943|ref|YP_183421.1| - 1.4e-97 326.6 0.0 1.5e-97 326.5 0.0 1.0 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH_2 PF13685.1 gi|57640943|ref|YP_183421.1| - 9.4e-15 54.5 0.0 1.4e-07 31.1 0.0 2.3 2 0 0 2 2 2 2 Iron-containing alcohol dehydrogenase IF2_N PF04760.10 gi|57640943|ref|YP_183421.1| - 0.12 12.0 0.2 0.4 10.3 0.1 2.0 1 0 0 1 1 1 0 Translation initiation factor IF-2, N-terminal region AAA_5 PF07728.9 gi|57640944|ref|YP_183422.1| - 1.2e-20 73.6 0.0 2.5e-10 40.2 0.0 2.7 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA PF00004.24 gi|57640944|ref|YP_183422.1| - 7.7e-06 26.1 0.1 0.00074 19.7 0.0 2.5 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|57640944|ref|YP_183422.1| - 6.1e-05 23.1 0.0 0.0056 16.8 0.0 2.6 2 0 0 2 2 2 1 AAA domain Arch_ATPase PF01637.13 gi|57640944|ref|YP_183422.1| - 0.00031 20.5 1.8 0.021 14.5 1.2 3.0 1 1 0 1 1 1 1 Archaeal ATPase AAA_17 PF13207.1 gi|57640944|ref|YP_183422.1| - 0.00044 21.0 1.6 0.012 16.4 0.0 3.5 3 1 0 3 3 3 1 AAA domain AAA_14 PF13173.1 gi|57640944|ref|YP_183422.1| - 0.0026 17.6 3.4 0.4 10.5 0.0 3.4 3 0 0 3 3 3 1 AAA domain AAA_16 PF13191.1 gi|57640944|ref|YP_183422.1| - 0.0046 16.9 0.0 0.016 15.1 0.0 1.9 1 1 0 1 1 1 1 AAA ATPase domain IstB_IS21 PF01695.12 gi|57640944|ref|YP_183422.1| - 0.007 15.8 0.0 0.019 14.3 0.0 1.7 1 0 0 1 1 1 1 IstB-like ATP binding protein KaiC PF06745.8 gi|57640944|ref|YP_183422.1| - 0.015 14.4 0.0 0.043 12.9 0.0 1.8 1 0 0 1 1 1 0 KaiC Mg_chelatase PF01078.16 gi|57640944|ref|YP_183422.1| - 0.027 13.6 0.0 0.057 12.5 0.0 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI PhoH PF02562.11 gi|57640944|ref|YP_183422.1| - 0.033 13.4 0.0 0.062 12.5 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein AAA_19 PF13245.1 gi|57640944|ref|YP_183422.1| - 0.045 13.5 0.0 0.096 12.4 0.0 1.5 1 0 0 1 1 1 0 Part of AAA domain RuvB_N PF05496.7 gi|57640944|ref|YP_183422.1| - 0.059 12.3 0.0 0.29 10.1 0.0 2.0 2 0 0 2 2 2 0 Holliday junction DNA helicase ruvB N-terminus Sigma54_activat PF00158.21 gi|57640944|ref|YP_183422.1| - 0.066 12.6 0.0 0.16 11.3 0.0 1.6 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_33 PF13671.1 gi|57640944|ref|YP_183422.1| - 0.069 13.0 0.0 0.23 11.3 0.0 2.0 1 1 0 1 1 1 0 AAA domain AAA_11 PF13086.1 gi|57640944|ref|YP_183422.1| - 0.076 12.5 0.1 0.21 11.1 0.0 1.8 2 0 0 2 2 2 0 AAA domain NACHT PF05729.7 gi|57640944|ref|YP_183422.1| - 0.16 11.6 0.0 0.44 10.1 0.0 1.7 1 0 0 1 1 1 0 NACHT domain Sigma54_activ_2 PF14532.1 gi|57640944|ref|YP_183422.1| - 0.2 11.6 0.0 2 8.4 0.0 2.2 2 0 0 2 2 2 0 Sigma-54 interaction domain McrBC PF10117.4 gi|57640945|ref|YP_183423.1| - 3.4e-76 256.2 0.0 4.6e-76 255.8 0.0 1.2 1 0 0 1 1 1 1 McrBC 5-methylcytosine restriction system component DUF524 PF04411.7 gi|57640945|ref|YP_183423.1| - 0.00064 19.5 0.1 0.0018 18.1 0.1 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF524) MFS_1 PF07690.11 gi|57640946|ref|YP_183424.1| - 1.5e-14 53.4 20.5 1.5e-14 53.4 14.2 2.0 2 0 0 2 2 2 1 Major Facilitator Superfamily MFS_3 PF05977.8 gi|57640946|ref|YP_183424.1| - 0.5 8.4 12.3 0.24 9.4 6.3 1.8 1 1 1 2 2 2 0 Transmembrane secretion effector DUF1212 PF06738.7 gi|57640946|ref|YP_183424.1| - 5.2 6.4 10.4 6 6.2 3.6 2.8 2 1 0 2 2 2 0 Protein of unknown function (DUF1212) MFS_1 PF07690.11 gi|57640947|ref|YP_183425.1| - 1.1e-35 122.9 13.8 1.4e-35 122.6 9.5 1.0 1 0 0 1 1 1 1 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|57640947|ref|YP_183425.1| - 2e-17 62.9 10.5 2.4e-17 62.6 7.3 1.0 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_2 PF13347.1 gi|57640947|ref|YP_183425.1| - 6.4e-08 31.4 11.1 3.1e-05 22.5 3.0 2.0 2 0 0 2 2 2 2 MFS/sugar transport protein TRI12 PF06609.8 gi|57640947|ref|YP_183425.1| - 0.0088 14.2 1.7 0.01 14.0 1.2 1.1 1 0 0 1 1 1 1 Fungal trichothecene efflux pump (TRI12) NicO PF03824.11 gi|57640947|ref|YP_183425.1| - 0.25 10.6 4.3 0.075 12.3 0.4 1.9 1 1 0 1 1 1 0 High-affinity nickel-transport protein DUF104 PF01954.11 gi|57640948|ref|YP_183426.1| - 3.1e-14 52.7 3.9 3.5e-14 52.5 2.7 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF104 PIN PF01850.16 gi|57640949|ref|YP_183427.1| - 9.9e-22 77.5 0.1 1.5e-21 76.9 0.1 1.3 1 0 0 1 1 1 1 PIN domain PIN_3 PF13470.1 gi|57640949|ref|YP_183427.1| - 1.5e-06 28.8 0.0 3e-06 27.9 0.0 1.5 1 1 0 1 1 1 1 PIN domain Mrr_N PF14338.1 gi|57640949|ref|YP_183427.1| - 0.099 12.7 0.1 0.16 12.1 0.1 1.3 1 0 0 1 1 1 0 Mrr N-terminal domain DEAD_assoc PF08494.6 gi|57640950|ref|YP_183428.1| - 1e-32 113.4 1.1 1e-31 110.1 0.6 2.4 2 0 0 2 2 2 1 DEAD/H associated DEAD PF00270.24 gi|57640950|ref|YP_183428.1| - 9.1e-31 106.6 0.0 6.7e-29 100.5 0.0 2.5 3 0 0 3 3 3 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|57640950|ref|YP_183428.1| - 5.8e-16 58.1 0.1 2e-14 53.2 0.0 2.6 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|57640950|ref|YP_183428.1| - 1.5e-05 24.9 0.0 2.8e-05 24.0 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_30 PF13604.1 gi|57640950|ref|YP_183428.1| - 0.0031 17.1 0.0 0.0069 15.9 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|57640950|ref|YP_183428.1| - 0.013 15.2 0.0 0.18 11.5 0.0 2.8 2 0 0 2 2 2 0 Part of AAA domain UvrD-helicase PF00580.16 gi|57640950|ref|YP_183428.1| - 0.02 14.1 0.0 0.032 13.5 0.0 1.4 1 0 0 1 1 1 0 UvrD/REP helicase N-terminal domain HypA PF01155.14 gi|57640950|ref|YP_183428.1| - 0.035 13.7 0.0 0.084 12.5 0.0 1.7 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-ribbon_3 PF13248.1 gi|57640950|ref|YP_183428.1| - 0.067 12.4 0.1 0.15 11.2 0.1 1.6 1 1 0 1 1 1 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|57640950|ref|YP_183428.1| - 0.074 13.0 0.4 0.15 12.0 0.2 1.4 1 0 0 1 1 1 0 Zinc ribbon domain zinc_ribbon_2 PF13240.1 gi|57640950|ref|YP_183428.1| - 0.17 11.4 0.1 0.51 9.8 0.1 1.8 1 1 0 1 1 1 0 zinc-ribbon domain zf-NADH-PPase PF09297.6 gi|57640950|ref|YP_183428.1| - 0.38 10.3 1.7 3.8 7.0 0.2 2.4 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain DUF835 PF05763.7 gi|57640951|ref|YP_183429.1| - 1.5e-25 89.3 0.0 1.7e-25 89.1 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF835) SMC_N PF02463.14 gi|57640952|ref|YP_183430.1| - 1.4e-75 253.3 20.9 3.9e-75 251.8 14.5 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain SMC_hinge PF06470.8 gi|57640952|ref|YP_183430.1| - 2.4e-35 121.1 1.1 7.2e-34 116.3 0.0 3.1 3 0 0 3 3 2 1 SMC proteins Flexible Hinge Domain AAA_21 PF13304.1 gi|57640952|ref|YP_183430.1| - 1.4e-13 51.4 34.8 2.8e-08 34.0 8.2 5.1 2 2 0 2 2 2 2 AAA domain AAA_23 PF13476.1 gi|57640952|ref|YP_183430.1| - 3e-12 47.3 23.6 3e-12 47.3 16.3 8.2 2 2 2 4 4 1 1 AAA domain AAA_13 PF13166.1 gi|57640952|ref|YP_183430.1| - 5.4e-12 45.0 123.8 1.9e-05 23.3 20.6 7.6 3 2 4 7 7 7 5 AAA domain Reo_sigmaC PF04582.7 gi|57640952|ref|YP_183430.1| - 1.6e-09 37.3 24.8 0.0013 18.0 2.8 5.5 3 2 4 7 7 7 5 Reovirus sigma C capsid protein IncA PF04156.9 gi|57640952|ref|YP_183430.1| - 2.9e-09 36.8 150.0 0.0026 17.3 13.9 8.1 3 2 5 8 8 8 4 IncA protein MscS_porin PF12795.2 gi|57640952|ref|YP_183430.1| - 8.1e-09 35.1 92.9 1.8e-06 27.4 6.6 7.4 3 3 4 7 7 7 5 Mechanosensitive ion channel porin domain AAA_27 PF13514.1 gi|57640952|ref|YP_183430.1| - 9.4e-08 30.2 109.2 0.00028 18.7 32.6 4.3 3 1 1 4 4 4 3 AAA domain DUF3584 PF12128.3 gi|57640952|ref|YP_183430.1| - 2.9e-07 28.2 106.1 6.9e-05 20.4 29.7 3.9 3 1 1 4 4 4 2 Protein of unknown function (DUF3584) AAA_29 PF13555.1 gi|57640952|ref|YP_183430.1| - 1.7e-05 24.2 0.1 3.5e-05 23.2 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain CENP-F_leu_zip PF10473.4 gi|57640952|ref|YP_183430.1| - 4.2e-05 23.4 25.2 4.2e-05 23.4 17.5 8.7 2 2 5 7 7 6 4 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Myosin_tail_1 PF01576.14 gi|57640952|ref|YP_183430.1| - 5.6e-05 21.0 70.8 5.6e-05 21.0 49.1 3.3 2 1 0 2 2 2 1 Myosin tail ATG16 PF08614.6 gi|57640952|ref|YP_183430.1| - 0.0001 22.1 119.0 0.011 15.5 10.1 7.9 2 2 6 8 8 8 3 Autophagy protein 16 (ATG16) IFT57 PF10498.4 gi|57640952|ref|YP_183430.1| - 0.00023 20.0 98.3 0.002 16.9 10.1 6.7 3 2 3 6 6 6 2 Intra-flagellar transport protein 57 APG6 PF04111.7 gi|57640952|ref|YP_183430.1| - 0.00032 19.8 19.1 0.00032 19.8 13.2 8.1 2 2 6 8 8 8 2 Autophagy protein Apg6 Baculo_PEP_C PF04513.7 gi|57640952|ref|YP_183430.1| - 0.00034 20.4 35.9 0.00085 19.1 2.0 7.8 2 2 6 8 8 8 2 Baculovirus polyhedron envelope protein, PEP, C terminus Atg14 PF10186.4 gi|57640952|ref|YP_183430.1| - 0.0023 16.9 19.2 0.0023 16.9 13.3 6.9 2 2 4 6 6 5 3 UV radiation resistance protein and autophagy-related subunit 14 Filament PF00038.16 gi|57640952|ref|YP_183430.1| - 0.0025 17.3 47.5 0.0025 17.3 32.9 4.7 2 2 2 4 4 3 3 Intermediate filament protein Spc7 PF08317.6 gi|57640952|ref|YP_183430.1| - 0.0046 15.6 138.4 0.034 12.8 13.3 7.6 2 2 5 7 7 7 4 Spc7 kinetochore protein SbcCD_C PF13558.1 gi|57640952|ref|YP_183430.1| - 0.0051 16.7 0.0 0.013 15.4 0.0 1.7 1 0 0 1 1 1 1 Putative exonuclease SbcCD, C subunit ADIP PF11559.3 gi|57640952|ref|YP_183430.1| - 0.0096 15.8 12.7 0.0096 15.8 8.8 8.7 3 3 6 9 9 8 1 Afadin- and alpha -actinin-Binding TBPIP PF07106.8 gi|57640952|ref|YP_183430.1| - 0.015 14.8 126.9 0.013 15.0 7.1 9.9 2 2 8 11 11 11 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) GAS PF13851.1 gi|57640952|ref|YP_183430.1| - 0.088 11.9 144.3 0.08 12.1 18.8 7.7 3 3 3 6 6 6 0 Growth-arrest specific micro-tubule binding WEMBL PF05701.6 gi|57640952|ref|YP_183430.1| - 0.17 10.2 158.5 0.011 14.2 48.1 5.3 3 2 1 4 4 4 0 Weak chloroplast movement under blue light Laminin_I PF06008.9 gi|57640952|ref|YP_183430.1| - 0.18 11.1 104.6 0.06 12.6 10.4 6.2 3 2 2 5 5 5 0 Laminin Domain I Seryl_tRNA_N PF02403.17 gi|57640952|ref|YP_183430.1| - 1.1 9.3 148.4 0.085 12.8 8.5 10.5 4 2 7 11 11 10 0 Seryl-tRNA synthetase N-terminal domain FliJ PF02050.11 gi|57640952|ref|YP_183430.1| - 1.1 9.2 118.6 0.024 14.6 11.8 9.1 5 2 5 10 10 9 0 Flagellar FliJ protein DUF4201 PF13870.1 gi|57640952|ref|YP_183430.1| - 2.9 7.3 127.3 0.23 10.9 14.4 8.4 2 2 6 8 8 8 0 Domain of unknown function (DUF4201) Fib_alpha PF08702.5 gi|57640952|ref|YP_183430.1| - 3 7.9 74.8 0.21 11.6 3.8 7.8 2 2 5 7 7 7 0 Fibrinogen alpha/beta chain family DUF1664 PF07889.7 gi|57640952|ref|YP_183430.1| - 6.9 6.4 81.5 0.31 10.8 5.3 9.9 3 2 7 10 10 10 0 Protein of unknown function (DUF1664) ScpA_ScpB PF02616.9 gi|57640953|ref|YP_183431.1| - 1.1e-44 152.8 7.0 2.8e-43 148.2 4.9 2.0 1 1 0 1 1 1 1 ScpA/B protein Rad21_Rec8 PF04824.11 gi|57640953|ref|YP_183431.1| - 0.00064 18.8 0.0 0.0012 17.9 0.0 1.4 1 0 0 1 1 1 1 Conserved region of Rad21 / Rec8 like protein DUF2542 PF10808.3 gi|57640955|ref|YP_183433.1| - 0.024 14.9 0.2 0.078 13.2 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2542) SVM_signal PF12113.3 gi|57640955|ref|YP_183433.1| - 0.11 12.2 1.4 0.36 10.6 1.0 1.8 1 0 0 1 1 1 0 SVM protein signal sequence DUF1656 PF07869.7 gi|57640955|ref|YP_183433.1| - 0.94 9.3 6.2 4.1 7.2 0.1 3.1 3 0 0 3 3 3 0 Protein of unknown function (DUF1656) ERCC4 PF02732.10 gi|57640956|ref|YP_183434.1| - 3.1e-31 108.0 0.0 1.3e-30 106.0 0.0 2.2 2 0 0 2 2 2 1 ERCC4 domain Helicase_C PF00271.26 gi|57640956|ref|YP_183434.1| - 4.8e-22 77.6 0.1 5.9e-21 74.1 0.1 2.7 3 0 0 3 3 3 1 Helicase conserved C-terminal domain DEAD PF00270.24 gi|57640956|ref|YP_183434.1| - 6.2e-22 77.8 0.3 3.9e-21 75.2 0.0 2.4 3 0 0 3 3 3 1 DEAD/DEAH box helicase ResIII PF04851.10 gi|57640956|ref|YP_183434.1| - 7.3e-17 61.7 0.0 2.7e-16 59.9 0.0 2.0 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit HHH_2 PF12826.2 gi|57640956|ref|YP_183434.1| - 1.2e-10 41.1 0.0 3.8e-10 39.5 0.0 1.9 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH PF00633.18 gi|57640956|ref|YP_183434.1| - 1e-07 31.2 0.1 2.9e-07 29.8 0.1 1.9 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|57640956|ref|YP_183434.1| - 1.5e-07 31.4 0.6 1.2e-06 28.6 0.1 2.8 3 0 0 3 3 3 1 Helix-hairpin-helix domain SecA_DEAD PF07517.9 gi|57640956|ref|YP_183434.1| - 0.00091 18.5 0.0 0.0027 17.0 0.0 1.7 2 0 0 2 2 2 1 SecA DEAD-like domain HHH_3 PF12836.2 gi|57640956|ref|YP_183434.1| - 0.0032 17.3 0.0 0.028 14.3 0.0 2.7 2 0 0 2 2 2 1 Helix-hairpin-helix motif SNF2_N PF00176.18 gi|57640956|ref|YP_183434.1| - 0.0046 15.8 0.0 0.0099 14.7 0.0 1.5 1 0 0 1 1 1 1 SNF2 family N-terminal domain Peptidase_M55 PF04951.8 gi|57640957|ref|YP_183435.1| - 1e-90 303.5 0.0 1.2e-90 303.3 0.0 1.0 1 0 0 1 1 1 1 D-aminopeptidase 3H PF02829.9 gi|57640958|ref|YP_183436.1| - 0.022 14.7 0.0 0.024 14.6 0.0 1.2 1 0 0 1 1 1 0 3H domain ACT_4 PF13291.1 gi|57640958|ref|YP_183436.1| - 0.12 12.7 0.0 0.14 12.4 0.0 1.3 1 0 0 1 1 1 0 ACT domain CDC73 PF05179.9 gi|57640960|ref|YP_183438.1| - 0.11 11.8 0.3 0.17 11.1 0.2 1.2 1 0 0 1 1 1 0 RNA pol II accessory factor, Cdc73 family PcrB PF01884.12 gi|57640961|ref|YP_183439.1| - 3.5e-96 320.9 0.0 4e-96 320.7 0.0 1.0 1 0 0 1 1 1 1 PcrB family His_biosynth PF00977.16 gi|57640961|ref|YP_183439.1| - 6.8e-08 32.0 0.1 5.6e-07 29.0 0.0 2.0 2 0 0 2 2 2 1 Histidine biosynthesis protein ThiG PF05690.9 gi|57640961|ref|YP_183439.1| - 1e-07 31.2 1.5 1.8e-05 23.9 0.1 2.1 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG Trp_syntA PF00290.15 gi|57640961|ref|YP_183439.1| - 2.7e-06 26.1 0.1 0.0001 20.9 0.1 2.1 2 0 0 2 2 2 1 Tryptophan synthase alpha chain G3P_antiterm PF04309.7 gi|57640961|ref|YP_183439.1| - 0.00015 20.8 0.5 0.00026 20.0 0.1 1.5 2 0 0 2 2 2 1 Glycerol-3-phosphate responsive antiterminator NanE PF04131.9 gi|57640961|ref|YP_183439.1| - 0.00016 20.6 0.3 0.015 14.2 0.1 2.2 2 0 0 2 2 2 1 Putative N-acetylmannosamine-6-phosphate epimerase DHO_dh PF01180.16 gi|57640961|ref|YP_183439.1| - 0.0015 17.5 0.2 0.0063 15.5 0.0 1.9 2 1 0 2 2 2 1 Dihydroorotate dehydrogenase BtpA PF03437.10 gi|57640961|ref|YP_183439.1| - 0.0017 17.6 0.2 0.11 11.7 0.0 2.1 2 0 0 2 2 2 1 BtpA family IMPDH PF00478.20 gi|57640961|ref|YP_183439.1| - 0.0041 16.0 0.3 0.037 12.9 0.1 2.0 2 0 0 2 2 2 1 IMP dehydrogenase / GMP reductase domain NMO PF03060.10 gi|57640961|ref|YP_183439.1| - 0.0049 16.0 4.8 0.0082 15.3 0.6 2.1 2 0 0 2 2 2 1 Nitronate monooxygenase Usp PF00582.21 gi|57640961|ref|YP_183439.1| - 0.0076 16.4 0.6 4 7.6 0.0 2.2 2 0 0 2 2 2 2 Universal stress protein family TIM-br_sig_trns PF09370.5 gi|57640961|ref|YP_183439.1| - 0.0083 15.2 0.0 0.015 14.3 0.0 1.4 1 0 0 1 1 1 1 TIM-barrel signal transduction protein Ribul_P_3_epim PF00834.14 gi|57640961|ref|YP_183439.1| - 0.0099 14.9 0.5 0.016 14.2 0.3 1.3 1 0 0 1 1 1 1 Ribulose-phosphate 3 epimerase family Dus PF01207.12 gi|57640961|ref|YP_183439.1| - 0.018 13.9 0.1 0.19 10.5 0.0 2.0 2 0 0 2 2 2 0 Dihydrouridine synthase (Dus) TMP-TENI PF02581.12 gi|57640961|ref|YP_183439.1| - 0.032 13.3 0.1 0.064 12.3 0.1 1.5 1 0 0 1 1 1 0 Thiamine monophosphate synthase/TENI FMN_dh PF01070.13 gi|57640961|ref|YP_183439.1| - 0.073 11.8 1.1 0.15 10.8 0.1 1.8 2 0 0 2 2 2 0 FMN-dependent dehydrogenase DUF561 PF04481.7 gi|57640961|ref|YP_183439.1| - 0.11 11.4 0.2 0.42 9.5 0.1 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF561) PIN PF01850.16 gi|57640962|ref|YP_183440.1| - 1.3e-11 44.8 0.0 1.8e-11 44.4 0.0 1.1 1 0 0 1 1 1 1 PIN domain PIN_4 PF13638.1 gi|57640962|ref|YP_183440.1| - 0.00026 21.1 0.0 0.0079 16.3 0.0 2.1 1 1 0 1 1 1 1 PIN domain PIN_2 PF10130.4 gi|57640962|ref|YP_183440.1| - 0.0035 17.3 0.0 0.0049 16.9 0.0 1.2 1 0 0 1 1 1 1 PIN domain PIN_3 PF13470.1 gi|57640962|ref|YP_183440.1| - 0.072 13.7 0.0 0.12 13.0 0.0 1.4 1 1 0 1 1 1 0 PIN domain DUF104 PF01954.11 gi|57640963|ref|YP_183441.1| - 2.8e-16 59.2 0.7 3.3e-16 59.0 0.5 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF104 DUF123 PF01986.11 gi|57640964|ref|YP_183442.1| - 7.7e-28 96.5 0.0 9.7e-28 96.2 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF123 GIY-YIG PF01541.19 gi|57640964|ref|YP_183442.1| - 0.0011 19.3 0.0 0.0016 18.7 0.0 1.4 1 0 0 1 1 1 1 GIY-YIG catalytic domain DUF2095 PF09868.4 gi|57640965|ref|YP_183443.1| - 6e-78 258.8 5.4 6.9e-78 258.6 3.7 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2095) ABC_tran PF00005.22 gi|57640966|ref|YP_183444.1| - 1.6e-42 145.0 0.0 6.1e-21 75.1 0.0 2.7 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|57640966|ref|YP_183444.1| - 6.8e-18 65.6 8.7 2e-05 24.7 0.1 4.4 2 2 1 3 3 3 3 AAA domain RLI PF04068.10 gi|57640966|ref|YP_183444.1| - 1.3e-11 43.8 1.9 2.7e-11 42.8 1.3 1.6 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI SMC_N PF02463.14 gi|57640966|ref|YP_183444.1| - 1.4e-11 44.0 6.9 2.2e-05 23.7 0.9 4.0 3 1 0 3 3 3 2 RecF/RecN/SMC N terminal domain Fer4_6 PF12837.2 gi|57640966|ref|YP_183444.1| - 6.9e-10 38.3 12.5 5.9e-05 22.7 2.1 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain AAA_17 PF13207.1 gi|57640966|ref|YP_183444.1| - 1.1e-07 32.6 2.1 0.0051 17.6 0.1 2.8 2 2 0 2 2 2 2 AAA domain Fer4 PF00037.22 gi|57640966|ref|YP_183444.1| - 4.5e-07 29.1 3.5 4.5e-07 29.1 2.5 3.5 3 1 0 3 3 3 1 4Fe-4S binding domain AAA PF00004.24 gi|57640966|ref|YP_183444.1| - 4.7e-06 26.8 0.2 0.048 13.8 0.0 2.7 2 1 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) Fer4_7 PF12838.2 gi|57640966|ref|YP_183444.1| - 5.8e-06 26.5 11.5 0.00027 21.2 8.7 2.4 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|57640966|ref|YP_183444.1| - 9.9e-06 25.3 10.3 3.4e-05 23.6 7.1 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain AAA_15 PF13175.1 gi|57640966|ref|YP_183444.1| - 1.1e-05 24.6 0.9 0.0055 15.8 0.0 3.7 3 1 1 4 4 4 1 AAA ATPase domain Fer4_2 PF12797.2 gi|57640966|ref|YP_183444.1| - 1.5e-05 24.6 12.3 0.0019 17.9 1.9 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|57640966|ref|YP_183444.1| - 1.5e-05 24.6 10.2 4.5e-05 23.1 7.3 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|57640966|ref|YP_183444.1| - 4.4e-05 23.6 9.6 9.6e-05 22.5 6.7 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain AAA_33 PF13671.1 gi|57640966|ref|YP_183444.1| - 7e-05 22.7 1.0 0.24 11.2 0.1 3.0 2 1 0 2 2 2 2 AAA domain Rad17 PF03215.10 gi|57640966|ref|YP_183444.1| - 9.2e-05 21.3 0.0 0.084 11.5 0.0 2.2 2 0 0 2 2 2 2 Rad17 cell cycle checkpoint protein AAA_22 PF13401.1 gi|57640966|ref|YP_183444.1| - 9.3e-05 22.5 0.9 0.25 11.4 0.0 3.1 2 1 0 2 2 2 2 AAA domain Miro PF08477.8 gi|57640966|ref|YP_183444.1| - 0.00019 21.9 0.2 0.014 15.8 0.0 2.4 2 0 0 2 2 2 1 Miro-like protein AAA_25 PF13481.1 gi|57640966|ref|YP_183444.1| - 0.00035 20.0 0.0 0.25 10.7 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_14 PF13173.1 gi|57640966|ref|YP_183444.1| - 0.00038 20.3 0.4 1.2 9.0 0.0 3.5 2 1 1 3 3 3 1 AAA domain MobB PF03205.9 gi|57640966|ref|YP_183444.1| - 0.00038 20.1 4.8 0.09 12.4 0.1 3.0 3 0 0 3 3 2 2 Molybdopterin guanine dinucleotide synthesis protein B RNA_helicase PF00910.17 gi|57640966|ref|YP_183444.1| - 0.00047 20.3 0.1 1.4 9.1 0.0 2.6 2 0 0 2 2 2 2 RNA helicase NACHT PF05729.7 gi|57640966|ref|YP_183444.1| - 0.00053 19.6 1.8 0.085 12.5 0.1 2.9 3 0 0 3 3 2 1 NACHT domain AAA_23 PF13476.1 gi|57640966|ref|YP_183444.1| - 0.0017 18.7 9.3 0.26 11.6 0.5 2.8 2 2 1 3 3 2 2 AAA domain AAA_29 PF13555.1 gi|57640966|ref|YP_183444.1| - 0.0019 17.7 0.2 2.1 7.9 0.0 2.4 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_18 PF13238.1 gi|57640966|ref|YP_183444.1| - 0.0019 18.5 3.1 0.078 13.2 0.1 3.0 2 2 0 2 2 2 1 AAA domain UPF0079 PF02367.12 gi|57640966|ref|YP_183444.1| - 0.0024 17.5 1.1 0.62 9.6 0.1 2.5 2 0 0 2 2 2 1 Uncharacterised P-loop hydrolase UPF0079 Fer4_16 PF13484.1 gi|57640966|ref|YP_183444.1| - 0.0024 18.5 7.8 0.0074 17.0 0.4 2.5 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain NB-ARC PF00931.17 gi|57640966|ref|YP_183444.1| - 0.0032 16.3 0.1 0.44 9.3 0.0 2.3 2 0 0 2 2 2 1 NB-ARC domain Fer4_11 PF13247.1 gi|57640966|ref|YP_183444.1| - 0.0033 17.2 3.2 0.0063 16.3 2.2 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain AAA_28 PF13521.1 gi|57640966|ref|YP_183444.1| - 0.0034 17.3 0.6 3.6 7.5 0.0 2.9 3 0 0 3 3 2 0 AAA domain SbcCD_C PF13558.1 gi|57640966|ref|YP_183444.1| - 0.0063 16.4 0.2 2.7 7.9 0.0 3.2 2 2 0 2 2 2 1 Putative exonuclease SbcCD, C subunit Fer4_8 PF13183.1 gi|57640966|ref|YP_183444.1| - 0.009 16.0 7.8 0.023 14.7 5.4 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain AAA_19 PF13245.1 gi|57640966|ref|YP_183444.1| - 0.0097 15.6 2.7 0.3 10.8 0.1 3.3 3 0 0 3 3 3 1 Part of AAA domain Fer4_3 PF12798.2 gi|57640966|ref|YP_183444.1| - 0.011 16.1 15.6 0.015 15.8 3.7 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain DUF258 PF03193.11 gi|57640966|ref|YP_183444.1| - 0.021 14.0 3.4 0.35 10.0 0.0 2.7 3 0 0 3 3 2 0 Protein of unknown function, DUF258 AAA_30 PF13604.1 gi|57640966|ref|YP_183444.1| - 0.021 14.4 0.5 1.5 8.3 0.0 2.5 2 0 0 2 2 2 0 AAA domain SRP54 PF00448.17 gi|57640966|ref|YP_183444.1| - 0.031 13.7 4.1 0.86 9.0 0.2 2.4 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain VirE PF05272.6 gi|57640966|ref|YP_183444.1| - 0.048 13.1 0.0 6.6 6.1 0.0 2.4 2 0 0 2 2 2 0 Virulence-associated protein E AAA_5 PF07728.9 gi|57640966|ref|YP_183444.1| - 0.065 12.9 0.8 17 5.1 0.1 2.9 3 0 0 3 3 2 0 AAA domain (dynein-related subfamily) ATP_bind_1 PF03029.12 gi|57640966|ref|YP_183444.1| - 0.066 12.7 0.4 5.3 6.4 0.0 2.4 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA_16 PF13191.1 gi|57640966|ref|YP_183444.1| - 0.073 13.0 6.5 2.6 7.9 0.1 3.4 2 2 0 2 2 2 0 AAA ATPase domain AAA_10 PF12846.2 gi|57640966|ref|YP_183444.1| - 0.089 12.2 2.3 2.9 7.2 0.2 2.7 2 1 0 2 2 2 0 AAA-like domain ArgK PF03308.11 gi|57640966|ref|YP_183444.1| - 0.11 11.2 2.0 7.7 5.1 0.1 2.4 2 0 0 2 2 2 0 ArgK protein Fer4_4 PF12800.2 gi|57640966|ref|YP_183444.1| - 0.11 12.8 12.6 0.29 11.5 2.3 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain NTPase_1 PF03266.10 gi|57640966|ref|YP_183444.1| - 0.13 11.9 5.4 1.5 8.5 0.1 3.2 3 0 0 3 3 3 0 NTPase AAA_24 PF13479.1 gi|57640966|ref|YP_183444.1| - 0.14 11.7 8.0 0.84 9.1 0.2 2.8 3 0 0 3 3 2 0 AAA domain AAA_13 PF13166.1 gi|57640966|ref|YP_183444.1| - 0.14 10.5 0.2 12 4.2 0.0 2.3 2 0 0 2 2 2 0 AAA domain ATP-synt_ab PF00006.20 gi|57640966|ref|YP_183444.1| - 0.21 11.0 0.1 20 4.5 0.0 2.3 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain Spore_IV_A PF09547.5 gi|57640966|ref|YP_183444.1| - 0.27 9.8 2.8 7.2 5.1 0.2 2.6 3 0 0 3 3 3 0 Stage IV sporulation protein A (spore_IV_A) Fer4_17 PF13534.1 gi|57640966|ref|YP_183444.1| - 0.67 10.3 9.8 14 6.0 6.8 2.6 1 1 0 1 1 1 0 4Fe-4S dicluster domain DUF87 PF01935.12 gi|57640966|ref|YP_183444.1| - 1.3 8.8 5.3 8.9 6.0 1.0 3.0 2 1 0 2 2 2 0 Domain of unknown function DUF87 AIRS_C PF02769.17 gi|57640967|ref|YP_183445.1| - 9.8e-24 84.0 0.1 1.5e-23 83.5 0.1 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|57640967|ref|YP_183445.1| - 8.2e-12 45.2 0.1 1.7e-11 44.2 0.1 1.5 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain Prok-JAB PF14464.1 gi|57640968|ref|YP_183446.1| - 1.3e-17 63.3 0.0 1.5e-17 63.0 0.0 1.1 1 0 0 1 1 1 1 Prokaryotic homologs of the JAB domain JAB PF01398.16 gi|57640968|ref|YP_183446.1| - 1.3e-08 34.5 0.0 1.9e-08 34.0 0.0 1.2 1 0 0 1 1 1 1 JAB1/Mov34/MPN/PAD-1 ubiquitin protease DUF4329 PF14220.1 gi|57640968|ref|YP_183446.1| - 0.077 12.9 0.0 0.25 11.2 0.0 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4329) HSDR_N PF04313.9 gi|57640969|ref|YP_183447.1| - 3.8e-11 43.0 0.2 6.2e-07 29.3 0.0 2.5 1 1 1 2 2 2 2 Type I restriction enzyme R protein N terminus (HSDR_N) HSDR_N_2 PF13588.1 gi|57640969|ref|YP_183447.1| - 5.7e-07 29.3 0.0 1.1e-06 28.4 0.0 1.4 1 0 0 1 1 1 1 Type I restriction enzyme R protein N terminus (HSDR_N) DUF1703 PF08011.6 gi|57640969|ref|YP_183447.1| - 0.012 15.3 0.0 0.027 14.1 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1703) RNA_pol_Rpb4 PF03874.11 gi|57640969|ref|YP_183447.1| - 0.031 14.2 0.0 0.069 13.1 0.0 1.6 1 0 0 1 1 1 0 RNA polymerase Rpb4 FumaraseC_C PF10415.4 gi|57640969|ref|YP_183447.1| - 0.1 12.7 0.1 0.35 10.9 0.0 2.0 1 1 0 1 1 1 0 Fumarase C C-terminus GATase_4 PF13230.1 gi|57640970|ref|YP_183448.1| - 2.8e-11 42.6 0.2 6.3e-11 41.4 0.1 1.5 1 1 0 1 1 1 1 Glutamine amidotransferases class-II GATase_6 PF13522.1 gi|57640970|ref|YP_183448.1| - 1.1e-09 38.3 0.0 2e-09 37.5 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|57640970|ref|YP_183448.1| - 0.025 13.2 0.0 0.038 12.7 0.0 1.3 1 0 0 1 1 1 0 Glutamine amidotransferases class-II CBS PF00571.23 gi|57640971|ref|YP_183449.1| - 9.7e-30 102.0 4.9 5.3e-16 58.1 0.1 2.1 2 0 0 2 2 2 2 CBS domain Acetyltransf_7 PF13508.1 gi|57640971|ref|YP_183449.1| - 0.032 14.4 0.0 10 6.3 0.0 2.2 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain DUF3659 PF12396.3 gi|57640971|ref|YP_183449.1| - 0.12 12.0 2.9 0.45 10.2 0.2 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF3659) Metallophos PF00149.23 gi|57640972|ref|YP_183450.1| - 5.3e-34 117.3 6.4 1.4e-22 80.0 2.9 2.2 2 0 0 2 2 2 2 Calcineurin-like phosphoesterase Metallophos_2 PF12850.2 gi|57640972|ref|YP_183450.1| - 1.6e-26 93.0 0.8 6e-15 55.4 0.1 2.1 2 0 0 2 2 2 2 Calcineurin-like phosphoesterase superfamily domain Metallophos_3 PF14582.1 gi|57640972|ref|YP_183450.1| - 6.8e-05 22.1 0.1 0.4 9.7 0.0 2.7 3 0 0 3 3 3 2 Metallophosphoesterase, calcineurin superfamily PhoD PF09423.5 gi|57640972|ref|YP_183450.1| - 0.00036 19.2 0.0 0.78 8.2 0.0 3.2 4 0 0 4 4 4 2 PhoD-like phosphatase ATP-cone PF03477.11 gi|57640973|ref|YP_183451.1| - 2.3e-11 43.9 0.3 4.2e-10 39.9 0.0 2.5 2 0 0 2 2 2 1 ATP cone domain AAA_18 PF13238.1 gi|57640973|ref|YP_183451.1| - 3.3e-08 33.8 0.1 7.3e-08 32.7 0.1 1.7 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|57640973|ref|YP_183451.1| - 3.8e-07 30.9 2.9 4.7e-07 30.6 0.5 2.4 2 1 0 2 2 2 1 AAA domain Zeta_toxin PF06414.7 gi|57640973|ref|YP_183451.1| - 0.00011 21.3 0.1 0.0024 16.9 0.1 2.2 1 1 0 1 1 1 1 Zeta toxin AAA_28 PF13521.1 gi|57640973|ref|YP_183451.1| - 0.00017 21.5 5.2 0.00096 19.1 0.1 2.6 3 0 0 3 3 3 1 AAA domain AAA_33 PF13671.1 gi|57640973|ref|YP_183451.1| - 0.00027 20.8 0.0 0.0022 17.8 0.0 2.2 1 1 0 1 1 1 1 AAA domain Cytidylate_kin2 PF13189.1 gi|57640973|ref|YP_183451.1| - 0.0052 16.7 0.5 0.33 10.8 0.0 2.5 2 0 0 2 2 2 1 Cytidylate kinase-like family AAA_5 PF07728.9 gi|57640973|ref|YP_183451.1| - 0.0071 16.0 0.7 0.057 13.1 0.1 2.6 3 0 0 3 3 3 1 AAA domain (dynein-related subfamily) CbiA PF01656.18 gi|57640973|ref|YP_183451.1| - 0.0078 15.6 1.7 0.048 13.0 0.5 2.4 2 1 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_16 PF13191.1 gi|57640973|ref|YP_183451.1| - 0.024 14.6 0.0 0.043 13.8 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain AAA_25 PF13481.1 gi|57640973|ref|YP_183451.1| - 0.028 13.8 0.1 0.093 12.1 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.1 gi|57640973|ref|YP_183451.1| - 0.041 13.4 0.0 0.082 12.4 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA PF00004.24 gi|57640973|ref|YP_183451.1| - 0.058 13.6 0.0 0.15 12.2 0.0 1.8 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) DUF258 PF03193.11 gi|57640973|ref|YP_183451.1| - 0.12 11.5 0.0 0.16 11.1 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 APS_kinase PF01583.15 gi|57640973|ref|YP_183451.1| - 0.18 11.4 1.0 0.57 9.8 0.2 2.1 2 1 0 2 2 2 0 Adenylylsulphate kinase AAA_26 PF13500.1 gi|57640974|ref|YP_183452.1| - 0.024 14.2 0.1 0.042 13.4 0.1 1.5 1 1 0 1 1 1 0 AAA domain cobW PF02492.14 gi|57640974|ref|YP_183452.1| - 0.036 13.5 0.0 0.2 11.0 0.0 2.2 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain DUF1611 PF07755.6 gi|57640974|ref|YP_183452.1| - 0.14 10.8 0.2 2.1 6.9 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1611) CBFD_NFYB_HMF PF00808.18 gi|57640975|ref|YP_183453.1| - 0.0011 19.0 0.7 0.002 18.1 0.5 1.6 1 1 0 1 1 1 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone SBP_bac_7 PF03480.8 gi|57640975|ref|YP_183453.1| - 0.028 13.5 0.0 0.028 13.5 0.0 1.1 1 0 0 1 1 1 0 Bacterial extracellular solute-binding protein, family 7 TFIID_20kDa PF03847.8 gi|57640975|ref|YP_183453.1| - 0.053 13.8 0.0 0.061 13.6 0.0 1.1 1 0 0 1 1 1 0 Transcription initiation factor TFIID subunit A Histone PF00125.19 gi|57640975|ref|YP_183453.1| - 0.079 13.0 0.1 0.13 12.4 0.1 1.4 1 1 0 1 1 1 0 Core histone H2A/H2B/H3/H4 DUF29 PF01724.11 gi|57640975|ref|YP_183453.1| - 0.14 12.0 0.0 0.15 11.9 0.0 1.0 1 0 0 1 1 1 0 Domain of unknown function DUF29 HTH_5 PF01022.15 gi|57640976|ref|YP_183454.1| - 5.5e-14 51.5 0.0 1.2e-13 50.5 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|57640976|ref|YP_183454.1| - 5.6e-14 51.6 0.1 1.1e-12 47.5 0.0 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain TrmB PF01978.14 gi|57640976|ref|YP_183454.1| - 1.1e-06 28.1 0.0 4.9e-06 26.1 0.0 1.9 1 1 1 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|57640976|ref|YP_183454.1| - 4.9e-05 22.8 0.0 0.00012 21.5 0.0 1.7 2 0 0 2 2 1 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|57640976|ref|YP_183454.1| - 0.00011 21.7 0.0 0.00018 21.1 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|57640976|ref|YP_183454.1| - 0.00012 21.3 0.0 0.00035 19.8 0.0 1.9 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.17 gi|57640976|ref|YP_183454.1| - 0.00017 21.1 0.0 0.00037 20.1 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_34 PF13601.1 gi|57640976|ref|YP_183454.1| - 0.00051 20.0 0.1 0.0013 18.6 0.0 1.8 2 0 0 2 2 1 1 Winged helix DNA-binding domain HxlR PF01638.12 gi|57640976|ref|YP_183454.1| - 0.00063 19.3 0.4 0.011 15.3 0.0 2.6 1 1 2 3 3 3 1 HxlR-like helix-turn-helix HTH_27 PF13463.1 gi|57640976|ref|YP_183454.1| - 0.0037 17.5 0.1 0.017 15.3 0.0 2.2 2 1 1 3 3 3 1 Winged helix DNA-binding domain DUF4423 PF14394.1 gi|57640976|ref|YP_183454.1| - 0.0048 16.4 0.1 0.027 14.0 0.0 2.1 1 1 1 2 2 2 1 Domain of unknown function (DUF4423) HTH_38 PF13936.1 gi|57640976|ref|YP_183454.1| - 0.018 14.5 0.0 0.038 13.5 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_11 PF08279.7 gi|57640976|ref|YP_183454.1| - 0.019 14.6 0.1 0.14 11.8 0.0 2.2 2 0 0 2 2 2 0 HTH domain Fe_dep_repress PF01325.14 gi|57640976|ref|YP_183454.1| - 0.024 14.5 0.1 0.048 13.6 0.1 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain LexA_DNA_bind PF01726.11 gi|57640976|ref|YP_183454.1| - 0.026 14.1 0.2 0.12 11.9 0.0 2.1 2 0 0 2 2 2 0 LexA DNA binding domain HTH_23 PF13384.1 gi|57640976|ref|YP_183454.1| - 0.049 13.2 0.0 0.24 11.0 0.0 2.1 3 0 0 3 3 2 0 Homeodomain-like domain ArsR PF09824.4 gi|57640976|ref|YP_183454.1| - 0.06 12.6 0.4 0.32 10.3 0.0 1.9 2 0 0 2 2 2 0 ArsR transcriptional regulator Prefoldin_2 PF01920.15 gi|57640976|ref|YP_183454.1| - 0.082 12.6 0.4 0.16 11.7 0.3 1.6 1 0 0 1 1 1 0 Prefoldin subunit Matrilin_ccoil PF10393.4 gi|57640976|ref|YP_183454.1| - 0.1 11.9 0.9 0.1 11.9 0.6 1.7 2 0 0 2 2 2 0 Trimeric coiled-coil oligomerisation domain of matrilin DUF2250 PF10007.4 gi|57640976|ref|YP_183454.1| - 0.12 12.3 1.3 0.77 9.7 0.0 2.7 2 1 1 3 3 3 0 Uncharacterized protein conserved in archaea (DUF2250) FaeA PF04703.7 gi|57640976|ref|YP_183454.1| - 0.14 12.3 0.0 0.29 11.3 0.0 1.5 1 0 0 1 1 1 0 FaeA-like protein DUF4098 PF13345.1 gi|57640978|ref|YP_183456.1| - 7.4e-19 67.4 7.0 1.3e-10 41.0 0.1 4.1 2 1 1 4 4 4 4 Domain of unknown function (DUF4098) DUF4097 PF13349.1 gi|57640978|ref|YP_183456.1| - 2.8e-12 46.4 0.2 1.1e-11 44.5 0.0 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF4097) DUF961 PF06125.6 gi|57640978|ref|YP_183456.1| - 0.023 14.8 0.1 0.12 12.5 0.0 2.2 1 1 2 3 3 3 0 Bacterial protein of unknown function (DUF961) Bactofilin PF04519.8 gi|57640978|ref|YP_183456.1| - 0.054 13.5 4.9 0.17 11.9 0.4 3.3 2 1 2 4 4 4 0 Polymer-forming cytoskeletal Ectoine_synth PF06339.7 gi|57640978|ref|YP_183456.1| - 0.09 12.6 0.3 0.46 10.4 0.1 1.9 2 0 0 2 2 2 0 Ectoine synthase MFS_1 PF07690.11 gi|57640979|ref|YP_183457.1| - 4.7e-34 117.6 29.2 4.7e-34 117.6 20.3 1.8 1 1 1 2 2 2 1 Major Facilitator Superfamily MFS_3 PF05977.8 gi|57640979|ref|YP_183457.1| - 3.3e-20 71.7 17.6 4.2e-20 71.3 12.2 1.0 1 0 0 1 1 1 1 Transmembrane secretion effector MFS_2 PF13347.1 gi|57640979|ref|YP_183457.1| - 1.5e-16 59.8 21.4 5.7e-12 44.7 2.9 2.1 1 1 1 2 2 2 2 MFS/sugar transport protein COX7C PF02935.11 gi|57640979|ref|YP_183457.1| - 0.03 14.0 0.6 0.28 11.0 0.0 2.8 3 0 0 3 3 3 0 Cytochrome c oxidase subunit VIIc ATG22 PF11700.3 gi|57640979|ref|YP_183457.1| - 0.09 11.2 20.6 0.81 8.0 14.3 2.6 1 1 0 1 1 1 0 Vacuole effluxer Atg22 like Cob_adeno_trans PF01923.13 gi|57640980|ref|YP_183458.1| - 3.7e-52 176.4 0.0 4.1e-52 176.2 0.0 1.0 1 0 0 1 1 1 1 Cobalamin adenosyltransferase ThuA PF06283.6 gi|57640981|ref|YP_183459.1| - 2.1e-09 37.4 0.1 8.5e-09 35.4 0.0 2.0 2 0 0 2 2 2 1 Trehalose utilisation TGFb_propeptide PF00688.13 gi|57640981|ref|YP_183459.1| - 3.8e-09 36.1 0.0 0.00089 18.6 0.0 2.3 2 0 0 2 2 2 2 TGF-beta propeptide Disaggr_repeat PF06848.6 gi|57640981|ref|YP_183459.1| - 7.3e-08 32.0 12.2 2.5e-05 23.7 0.3 4.1 5 0 0 5 5 5 2 Disaggregatase related repeat ABC_transp_aux PF09822.4 gi|57640981|ref|YP_183459.1| - 2.3e-07 30.5 0.1 6.1e-07 29.1 0.0 1.7 2 0 0 2 2 2 1 ABC-type uncharacterized transport system Glyco_hydro_2 PF00703.16 gi|57640981|ref|YP_183459.1| - 0.00021 21.7 0.2 0.0017 18.8 0.1 2.7 1 0 0 1 1 1 1 Glycosyl hydrolases family 2 DUF4159 PF13709.1 gi|57640981|ref|YP_183459.1| - 0.00044 19.4 0.0 0.0065 15.6 0.0 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF4159) FlgD_ig PF13860.1 gi|57640981|ref|YP_183459.1| - 0.0008 19.0 0.1 0.005 16.5 0.1 2.4 1 0 0 1 1 1 1 FlgD Ig-like domain CARDB PF07705.6 gi|57640981|ref|YP_183459.1| - 0.0013 18.7 0.5 0.0013 18.7 0.3 4.4 4 0 0 4 4 4 2 CARDB DUF4350 PF14258.1 gi|57640981|ref|YP_183459.1| - 0.0013 18.8 0.0 0.01 15.9 0.0 2.6 2 0 0 2 2 2 1 Domain of unknown function (DUF4350) DUF1355 PF07090.6 gi|57640981|ref|YP_183459.1| - 0.021 14.1 0.0 0.056 12.8 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1355) Rep_fac-A_3 PF08661.6 gi|57640981|ref|YP_183459.1| - 0.077 12.9 2.9 0.58 10.0 0.1 3.0 3 0 0 3 3 3 0 Replication factor A protein 3 Mrr_N PF14338.1 gi|57640981|ref|YP_183459.1| - 0.13 12.4 0.0 0.36 10.9 0.0 1.7 1 0 0 1 1 1 0 Mrr N-terminal domain BiPBP_C PF06832.7 gi|57640981|ref|YP_183459.1| - 0.14 12.1 0.0 0.79 9.6 0.0 2.3 3 0 0 3 3 3 0 Penicillin-Binding Protein C-terminus Family IF-2B PF01008.12 gi|57640982|ref|YP_183460.1| - 1.2e-52 178.7 0.0 2.9e-52 177.4 0.0 1.6 1 1 0 1 1 1 1 Initiation factor 2 subunit family PNP_UDP_1 PF01048.15 gi|57640982|ref|YP_183460.1| - 0.075 11.9 0.0 0.12 11.3 0.0 1.2 1 0 0 1 1 1 0 Phosphorylase superfamily KaiC PF06745.8 gi|57640983|ref|YP_183461.1| - 5.9e-52 176.0 0.2 6.7e-52 175.8 0.1 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|57640983|ref|YP_183461.1| - 1.8e-15 56.9 0.0 2.5e-15 56.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain GvpD PF07088.6 gi|57640983|ref|YP_183461.1| - 3.8e-12 45.2 0.5 2.4e-11 42.6 0.3 1.9 1 1 0 1 1 1 1 GvpD gas vesicle protein IstB_IS21 PF01695.12 gi|57640983|ref|YP_183461.1| - 2.7e-07 30.1 0.2 6.6e-06 25.6 0.0 2.2 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_14 PF13173.1 gi|57640983|ref|YP_183461.1| - 1.2e-06 28.4 0.1 1.6e-05 24.7 0.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|57640983|ref|YP_183461.1| - 7.7e-06 25.5 0.1 1.8e-05 24.3 0.1 1.6 1 0 0 1 1 1 1 Part of AAA domain AAA_22 PF13401.1 gi|57640983|ref|YP_183461.1| - 1.4e-05 25.2 0.0 2.8e-05 24.2 0.0 1.5 1 1 0 1 1 1 1 AAA domain Arch_ATPase PF01637.13 gi|57640983|ref|YP_183461.1| - 3.4e-05 23.6 0.3 4.1e-05 23.3 0.2 1.1 1 0 0 1 1 1 1 Archaeal ATPase PAXNEB PF05625.6 gi|57640983|ref|YP_183461.1| - 0.00021 20.2 1.6 0.012 14.4 0.1 2.4 1 1 1 2 2 2 1 PAXNEB protein NACHT PF05729.7 gi|57640983|ref|YP_183461.1| - 0.0004 20.0 0.4 0.0099 15.5 0.0 2.2 2 0 0 2 2 2 1 NACHT domain DUF2075 PF09848.4 gi|57640983|ref|YP_183461.1| - 0.00042 19.3 0.5 0.0047 15.9 0.1 2.0 1 1 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) AAA_5 PF07728.9 gi|57640983|ref|YP_183461.1| - 0.00049 19.8 0.1 0.00081 19.1 0.0 1.6 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_24 PF13479.1 gi|57640983|ref|YP_183461.1| - 0.00052 19.6 0.1 0.0046 16.5 0.1 2.2 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|57640983|ref|YP_183461.1| - 0.00077 19.4 0.1 0.0049 16.8 0.0 2.0 1 1 1 2 2 2 1 AAA domain AAA_31 PF13614.1 gi|57640983|ref|YP_183461.1| - 0.0011 18.8 0.1 0.007 16.3 0.0 2.2 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|57640983|ref|YP_183461.1| - 0.0015 18.8 0.0 0.0023 18.2 0.0 1.5 1 1 0 1 1 1 1 AAA domain RecA PF00154.16 gi|57640983|ref|YP_183461.1| - 0.0019 17.2 0.1 0.003 16.6 0.0 1.2 1 0 0 1 1 1 1 recA bacterial DNA recombination protein AAA_17 PF13207.1 gi|57640983|ref|YP_183461.1| - 0.0019 18.9 0.0 0.0049 17.6 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|57640983|ref|YP_183461.1| - 0.0059 16.7 1.0 0.014 15.6 0.7 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DnaB_C PF03796.10 gi|57640983|ref|YP_183461.1| - 0.0086 14.9 0.0 0.0096 14.8 0.0 1.4 1 1 0 1 1 1 1 DnaB-like helicase C terminal domain TIP49 PF06068.8 gi|57640983|ref|YP_183461.1| - 0.01 14.5 0.1 0.015 13.9 0.1 1.3 1 0 0 1 1 1 0 TIP49 C-terminus Rad51 PF08423.6 gi|57640983|ref|YP_183461.1| - 0.014 14.3 0.2 1.5 7.6 0.0 2.1 2 0 0 2 2 2 0 Rad51 MipZ PF09140.6 gi|57640983|ref|YP_183461.1| - 0.017 14.2 0.0 0.024 13.7 0.0 1.2 1 0 0 1 1 1 0 ATPase MipZ PhoH PF02562.11 gi|57640983|ref|YP_183461.1| - 0.018 14.2 0.4 0.093 11.9 0.0 2.1 2 1 1 3 3 3 0 PhoH-like protein ATP-synt_ab PF00006.20 gi|57640983|ref|YP_183461.1| - 0.02 14.3 0.0 0.026 14.0 0.0 1.3 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_30 PF13604.1 gi|57640983|ref|YP_183461.1| - 0.023 14.2 0.0 0.055 13.0 0.0 1.7 1 1 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|57640983|ref|YP_183461.1| - 0.033 14.4 0.0 0.042 14.1 0.0 1.2 1 0 0 1 1 1 0 ABC transporter MEDS PF14417.1 gi|57640983|ref|YP_183461.1| - 0.044 12.8 0.0 0.072 12.1 0.0 1.4 1 1 0 1 1 1 0 MEDS: MEthanogen/methylotroph, DcmR Sensory domain AAA_16 PF13191.1 gi|57640983|ref|YP_183461.1| - 0.054 13.4 0.1 0.067 13.1 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain DAP3 PF10236.4 gi|57640983|ref|YP_183461.1| - 0.056 12.3 0.0 0.23 10.3 0.0 1.9 2 1 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 ArsA_ATPase PF02374.10 gi|57640983|ref|YP_183461.1| - 0.063 12.3 0.1 0.18 10.8 0.0 1.7 1 1 0 1 1 1 0 Anion-transporting ATPase AAA_11 PF13086.1 gi|57640983|ref|YP_183461.1| - 0.091 12.3 0.2 0.17 11.4 0.1 1.5 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|57640983|ref|YP_183461.1| - 0.1 12.4 0.0 0.13 12.1 0.0 1.5 1 1 0 1 1 1 0 AAA domain Viral_helicase1 PF01443.13 gi|57640983|ref|YP_183461.1| - 0.11 11.9 0.6 0.83 9.1 0.1 2.1 1 1 0 2 2 2 0 Viral (Superfamily 1) RNA helicase CbiA PF01656.18 gi|57640983|ref|YP_183461.1| - 0.13 11.6 0.2 0.28 10.5 0.1 1.8 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain T2SE PF00437.15 gi|57640983|ref|YP_183461.1| - 0.13 11.1 0.3 0.76 8.6 0.0 2.0 1 1 0 2 2 2 0 Type II/IV secretion system protein Zot PF05707.7 gi|57640983|ref|YP_183461.1| - 0.14 11.5 0.0 0.2 11.1 0.0 1.4 1 1 0 1 1 1 0 Zonular occludens toxin (Zot) tRNA-synt_1g PF09334.6 gi|57640984|ref|YP_183462.1| - 3.8e-163 542.7 0.0 4.9e-163 542.3 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (M) tRNA_bind PF01588.15 gi|57640984|ref|YP_183462.1| - 1.4e-32 111.3 0.0 2.5e-32 110.5 0.0 1.4 1 0 0 1 1 1 1 Putative tRNA binding domain tRNA-synt_1 PF00133.17 gi|57640984|ref|YP_183462.1| - 9.4e-18 63.5 1.1 3e-08 32.1 0.0 3.8 3 1 1 4 4 4 3 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.8 gi|57640984|ref|YP_183462.1| - 4.2e-15 55.8 0.1 8.8e-15 54.7 0.1 1.5 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1e PF01406.14 gi|57640984|ref|YP_183462.1| - 0.0037 16.4 0.0 1.9 7.5 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain DZR PF12773.2 gi|57640984|ref|YP_183462.1| - 0.017 14.9 5.1 0.031 14.0 2.9 1.8 1 1 1 2 2 2 0 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|57640984|ref|YP_183462.1| - 0.57 9.4 8.5 8.7 5.7 5.9 2.4 1 1 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|57640984|ref|YP_183462.1| - 1.5 8.4 11.1 0.25 10.8 3.6 2.6 2 0 0 2 2 2 0 zinc-ribbon domain Cys_rich_CPXG PF14255.1 gi|57640984|ref|YP_183462.1| - 1.8 8.4 8.3 80 3.1 0.8 3.4 1 1 1 2 2 2 0 Cysteine-rich CPXCG MarR_2 PF12802.2 gi|57640985|ref|YP_183463.1| - 9e-07 28.4 0.0 1.9e-06 27.4 0.0 1.5 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|57640985|ref|YP_183463.1| - 2.1e-06 27.3 0.0 4.2e-06 26.3 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Fe_dep_repress PF01325.14 gi|57640985|ref|YP_183463.1| - 6.4e-05 22.8 0.0 0.00017 21.4 0.0 1.7 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_24 PF13412.1 gi|57640985|ref|YP_183463.1| - 7.6e-05 22.0 0.0 0.00013 21.3 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.17 gi|57640985|ref|YP_183463.1| - 0.002 17.7 0.0 0.0044 16.7 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|57640985|ref|YP_183463.1| - 0.0021 17.5 0.0 0.004 16.7 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain DUF4366 PF14283.1 gi|57640985|ref|YP_183463.1| - 0.0035 16.8 0.0 0.0054 16.1 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4366) DUF4330 PF14221.1 gi|57640985|ref|YP_183463.1| - 0.0081 16.0 1.1 0.034 14.0 0.0 2.2 2 1 0 2 2 2 1 Domain of unknown function (DUF4330) Podoplanin PF05808.6 gi|57640985|ref|YP_183463.1| - 0.011 15.3 2.5 0.022 14.3 1.7 1.5 1 0 0 1 1 1 0 Podoplanin DUF912 PF06024.7 gi|57640985|ref|YP_183463.1| - 0.029 14.4 1.0 0.098 12.7 0.0 2.3 2 1 0 2 2 2 0 Nucleopolyhedrovirus protein of unknown function (DUF912) DUF3793 PF12672.2 gi|57640985|ref|YP_183463.1| - 0.039 13.5 0.0 0.06 12.9 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3793) Amnionless PF14828.1 gi|57640985|ref|YP_183463.1| - 0.045 12.2 0.0 0.071 11.5 0.0 1.3 1 0 0 1 1 1 0 Amnionless ComX PF05952.7 gi|57640985|ref|YP_183463.1| - 0.075 12.5 0.1 0.54 9.8 0.0 2.2 1 1 1 2 2 2 0 Bacillus competence pheromone ComX Rrf2 PF02082.15 gi|57640985|ref|YP_183463.1| - 0.1 12.7 0.0 0.38 10.9 0.0 1.9 1 0 0 1 1 1 0 Transcriptional regulator HTH_20 PF12840.2 gi|57640985|ref|YP_183463.1| - 0.14 11.9 0.0 0.24 11.2 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_DeoR PF08220.7 gi|57640985|ref|YP_183463.1| - 0.15 11.6 0.0 9.4 5.8 0.0 2.3 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain TMEM154 PF15102.1 gi|57640985|ref|YP_183463.1| - 1.2 8.7 8.4 0.52 10.0 2.4 2.2 1 1 1 2 2 2 0 TMEM154 protein family Syntaxin PF00804.20 gi|57640986|ref|YP_183464.1| - 0.012 15.7 2.9 0.049 13.7 0.1 2.8 3 0 0 3 3 3 0 Syntaxin FCD PF07729.7 gi|57640986|ref|YP_183464.1| - 0.015 15.5 1.2 3.7 7.9 0.3 2.5 1 1 1 2 2 2 0 FCD domain AAA_23 PF13476.1 gi|57640986|ref|YP_183464.1| - 1.7 8.9 4.8 3.3 7.9 3.3 1.7 1 1 0 1 1 1 0 AAA domain IncA PF04156.9 gi|57640986|ref|YP_183464.1| - 2.6 7.6 8.1 8.2 5.9 4.8 2.3 2 1 0 2 2 2 0 IncA protein BLOC1_2 PF10046.4 gi|57640986|ref|YP_183464.1| - 4.4 7.5 8.6 0.26 11.4 0.4 2.8 3 0 0 3 3 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 TauE PF01925.14 gi|57640988|ref|YP_183466.1| - 6.2e-54 182.9 29.6 7.3e-54 182.7 20.5 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE UPF0016 PF01169.14 gi|57640988|ref|YP_183466.1| - 0.011 15.8 0.1 0.011 15.8 0.1 3.6 2 2 2 5 5 5 0 Uncharacterized protein family UPF0016 TerC PF03741.11 gi|57640988|ref|YP_183466.1| - 0.033 13.6 4.6 0.043 13.2 0.4 2.6 2 1 0 2 2 2 0 Integral membrane protein TerC family Acetyltransf_7 PF13508.1 gi|57640989|ref|YP_183467.1| - 2.5e-14 53.1 0.1 3.7e-14 52.6 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|57640989|ref|YP_183467.1| - 5.3e-13 48.8 0.0 7.8e-13 48.2 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_9 PF13527.1 gi|57640989|ref|YP_183467.1| - 3.2e-07 30.2 0.0 9.9e-07 28.6 0.0 1.9 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|57640989|ref|YP_183467.1| - 8.6e-06 25.8 0.0 1.2e-05 25.4 0.0 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|57640989|ref|YP_183467.1| - 0.0018 18.4 0.0 0.0023 18.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|57640989|ref|YP_183467.1| - 0.0019 17.8 0.0 0.0032 17.2 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_8 PF13523.1 gi|57640989|ref|YP_183467.1| - 0.06 13.2 0.0 0.077 12.8 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|57640989|ref|YP_183467.1| - 0.066 13.1 0.0 0.11 12.4 0.0 1.4 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase Acetyltransf_4 PF13420.1 gi|57640989|ref|YP_183467.1| - 0.08 12.8 0.0 0.11 12.4 0.0 1.4 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain AhpC-TSA PF00578.16 gi|57640990|ref|YP_183468.1| - 3.4e-36 123.6 0.0 4.3e-36 123.3 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|57640990|ref|YP_183468.1| - 5.6e-18 64.8 0.0 7e-18 64.5 0.0 1.1 1 0 0 1 1 1 1 Redoxin AhpC-TSA_2 PF13911.1 gi|57640990|ref|YP_183468.1| - 1.2e-08 34.8 0.0 5.1e-08 32.8 0.0 1.8 1 1 0 1 1 1 1 AhpC/TSA antioxidant enzyme Thioredoxin_8 PF13905.1 gi|57640990|ref|YP_183468.1| - 0.00054 20.0 0.0 0.00075 19.5 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin-like YcfA PF07927.7 gi|57640990|ref|YP_183468.1| - 0.0089 15.9 0.1 0.018 14.9 0.0 1.6 1 0 0 1 1 1 1 YcfA-like protein DUF899 PF05988.7 gi|57640990|ref|YP_183468.1| - 0.011 15.1 0.0 0.012 15.0 0.0 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF899) Rubrerythrin PF02915.12 gi|57640991|ref|YP_183469.1| - 2.9e-15 56.8 15.0 3.4e-15 56.5 10.4 1.1 1 0 0 1 1 1 1 Rubrerythrin Ferritin_2 PF13668.1 gi|57640991|ref|YP_183469.1| - 9.3e-08 32.1 5.3 0.0031 17.4 0.4 2.1 2 0 0 2 2 2 2 Ferritin-like domain DUF2383 PF09537.5 gi|57640991|ref|YP_183469.1| - 1.9e-05 24.8 5.5 0.0017 18.5 0.3 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF2383) DUF2202 PF09968.4 gi|57640991|ref|YP_183469.1| - 0.0077 15.9 1.9 0.058 13.0 1.3 1.9 1 1 0 1 1 1 1 Uncharacterized protein domain (DUF2202) Ferritin PF00210.19 gi|57640991|ref|YP_183469.1| - 0.039 13.6 12.0 0.15 11.7 4.1 2.1 1 1 1 2 2 2 0 Ferritin-like domain DUF4460 PF14687.1 gi|57640991|ref|YP_183469.1| - 0.15 11.8 0.9 0.92 9.2 0.1 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4460) DUF4439 PF14530.1 gi|57640991|ref|YP_183469.1| - 0.21 12.0 1.7 0.68 10.4 0.1 2.0 1 1 2 3 3 3 0 Domain of unknown function (DUF4439) DUF3231 PF11553.3 gi|57640991|ref|YP_183469.1| - 0.25 10.8 3.0 3 7.3 0.2 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3231) SnAC PF14619.1 gi|57640991|ref|YP_183469.1| - 1 9.6 4.1 2.2 8.5 2.0 2.2 1 1 0 1 1 1 0 Snf2-ATP coupling, chromatin remodelling complex FUR PF01475.14 gi|57640992|ref|YP_183470.1| - 2.2e-10 40.5 0.0 2.3e-10 40.4 0.0 1.0 1 0 0 1 1 1 1 Ferric uptake regulator family Spore_GerAC PF05504.6 gi|57640992|ref|YP_183470.1| - 0.068 12.9 0.2 0.084 12.6 0.2 1.1 1 0 0 1 1 1 0 Spore germination B3/ GerAC like, C-terminal DUF1827 PF08860.5 gi|57640992|ref|YP_183470.1| - 0.098 12.7 0.1 0.12 12.4 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1827) FUR PF01475.14 gi|57640993|ref|YP_183471.1| - 0.00016 21.6 0.0 0.00018 21.4 0.0 1.1 1 0 0 1 1 1 1 Ferric uptake regulator family DHC_N1 PF08385.7 gi|57640993|ref|YP_183471.1| - 0.057 11.7 0.0 0.058 11.7 0.0 1.0 1 0 0 1 1 1 0 Dynein heavy chain, N-terminal region 1 Ferritin PF00210.19 gi|57640994|ref|YP_183472.1| - 2.6e-18 66.1 0.1 3.3e-18 65.8 0.0 1.1 1 0 0 1 1 1 1 Ferritin-like domain Rubrerythrin PF02915.12 gi|57640994|ref|YP_183472.1| - 7.6e-05 23.0 0.2 0.00012 22.4 0.1 1.3 1 0 0 1 1 1 1 Rubrerythrin Ferritin_2 PF13668.1 gi|57640994|ref|YP_183472.1| - 0.0015 18.4 0.0 0.0021 18.0 0.0 1.2 1 0 0 1 1 1 1 Ferritin-like domain UPF0278 PF08745.6 gi|57640994|ref|YP_183472.1| - 0.023 13.9 0.1 0.057 12.6 0.0 1.6 1 1 1 2 2 2 0 UPF0278 family Rubrerythrin PF02915.12 gi|57640995|ref|YP_183473.1| - 1.8e-08 34.8 3.9 2.1e-08 34.5 2.7 1.1 1 0 0 1 1 1 1 Rubrerythrin DUF2383 PF09537.5 gi|57640995|ref|YP_183473.1| - 3.5e-05 24.0 0.7 7.3e-05 22.9 0.5 1.6 1 1 0 1 1 1 1 Domain of unknown function (DUF2383) Ferritin PF00210.19 gi|57640995|ref|YP_183473.1| - 0.0025 17.5 2.8 0.0065 16.2 1.9 1.6 1 1 0 1 1 1 1 Ferritin-like domain DUF3231 PF11553.3 gi|57640995|ref|YP_183473.1| - 0.0038 16.7 0.1 0.0065 15.9 0.1 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF3231) Rubrerythrin PF02915.12 gi|57640996|ref|YP_183474.1| - 7.2e-05 23.1 1.3 8.5e-05 22.8 0.9 1.1 1 0 0 1 1 1 1 Rubrerythrin DUF2383 PF09537.5 gi|57640996|ref|YP_183474.1| - 0.00033 20.8 0.2 0.00061 19.9 0.1 1.5 1 1 1 2 2 2 1 Domain of unknown function (DUF2383) Ferritin_2 PF13668.1 gi|57640996|ref|YP_183474.1| - 0.024 14.5 0.0 0.026 14.4 0.0 1.1 1 0 0 1 1 1 0 Ferritin-like domain Ferritin PF00210.19 gi|57640996|ref|YP_183474.1| - 0.044 13.5 1.3 0.052 13.3 0.9 1.2 1 0 0 1 1 1 0 Ferritin-like domain DUF3945 PF13101.1 gi|57640996|ref|YP_183474.1| - 0.078 12.2 0.1 0.11 11.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3945) Rubrerythrin PF02915.12 gi|57640997|ref|YP_183475.1| - 1.3e-13 51.4 2.2 1.5e-13 51.2 1.5 1.1 1 0 0 1 1 1 1 Rubrerythrin Ferritin_2 PF13668.1 gi|57640997|ref|YP_183475.1| - 7.8e-05 22.6 0.0 0.0001 22.2 0.0 1.2 1 0 0 1 1 1 1 Ferritin-like domain DUF2383 PF09537.5 gi|57640997|ref|YP_183475.1| - 9.7e-05 22.5 1.5 0.085 13.1 0.5 2.3 2 1 0 2 2 2 2 Domain of unknown function (DUF2383) FISNA PF14484.1 gi|57640997|ref|YP_183475.1| - 0.11 12.4 0.4 0.2 11.6 0.2 1.6 1 1 0 1 1 1 0 Fish-specific NACHT associated domain DUF896 PF05979.7 gi|57640997|ref|YP_183475.1| - 0.79 9.3 3.3 28 4.4 0.8 2.6 3 0 0 3 3 3 0 Bacterial protein of unknown function (DUF896) MS_channel PF00924.13 gi|57640998|ref|YP_183476.1| - 2.1e-50 170.9 1.1 3.3e-50 170.2 0.8 1.3 1 0 0 1 1 1 1 Mechanosensitive ion channel TM_helix PF05552.7 gi|57640998|ref|YP_183476.1| - 3.8e-06 26.4 5.0 3.8e-06 26.4 3.4 2.6 1 1 1 2 2 2 1 Conserved TM helix ABC2_membrane_4 PF12730.2 gi|57640998|ref|YP_183476.1| - 0.077 12.1 6.9 0.097 11.8 4.8 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein SPC12 PF06645.8 gi|57640998|ref|YP_183476.1| - 9.4 6.1 9.5 2.5 7.9 0.5 2.7 1 1 0 2 2 2 0 Microsomal signal peptidase 12 kDa subunit (SPC12) Radical_SAM PF04055.16 gi|57640999|ref|YP_183477.1| - 2.5e-18 66.8 0.1 3.6e-18 66.2 0.0 1.2 1 0 0 1 1 1 1 Radical SAM superfamily SPASM PF13186.1 gi|57640999|ref|YP_183477.1| - 2.2e-13 50.3 0.5 2.2e-13 50.3 0.3 2.5 2 0 0 2 2 2 1 Iron-sulfur cluster-binding domain Fer4_14 PF13394.1 gi|57640999|ref|YP_183477.1| - 5.4e-08 32.8 1.3 1.4e-07 31.5 0.0 2.3 3 0 0 3 3 3 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|57640999|ref|YP_183477.1| - 1.4e-06 28.4 0.1 7.4e-06 26.1 0.0 2.0 2 0 0 2 2 2 1 4Fe-4S single cluster domain HAD_2 PF13419.1 gi|57640999|ref|YP_183477.1| - 0.046 13.9 0.0 0.099 12.8 0.0 1.5 1 0 0 1 1 1 0 Haloacid dehalogenase-like hydrolase ThiS PF02597.15 gi|57641000|ref|YP_183478.1| - 8.2e-22 77.4 0.0 9e-22 77.2 0.0 1.0 1 0 0 1 1 1 1 ThiS family Lambda_tail_I PF06805.7 gi|57641000|ref|YP_183478.1| - 0.002 17.8 0.0 0.0026 17.5 0.0 1.1 1 0 0 1 1 1 1 Bacteriophage lambda tail assembly protein I Urm1 PF09138.6 gi|57641000|ref|YP_183478.1| - 0.0021 18.1 0.0 0.0022 18.0 0.0 1.2 1 0 0 1 1 1 1 Urm1 (Ubiquitin related modifier) TGS PF02824.16 gi|57641000|ref|YP_183478.1| - 0.0047 16.7 0.0 0.007 16.1 0.0 1.4 1 0 0 1 1 1 1 TGS domain AFOR_C PF01314.13 gi|57641001|ref|YP_183479.1| - 6.7e-148 492.4 0.0 8.2e-148 492.1 0.0 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.10 gi|57641001|ref|YP_183479.1| - 1.5e-89 298.6 0.7 2.2e-89 298.1 0.5 1.2 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain DUF650 PF04894.7 gi|57641002|ref|YP_183480.1| - 1.7e-105 352.3 0.0 2.2e-105 352.0 0.0 1.1 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF650) DUF651 PF04895.7 gi|57641002|ref|YP_183480.1| - 5.7e-40 135.3 0.3 8.7e-40 134.7 0.2 1.3 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF651) Matrilin_ccoil PF10393.4 gi|57641003|ref|YP_183481.1| - 0.027 13.8 1.0 0.041 13.2 0.7 1.3 1 0 0 1 1 1 0 Trimeric coiled-coil oligomerisation domain of matrilin THUMP PF02926.12 gi|57641003|ref|YP_183481.1| - 0.029 14.2 0.6 0.038 13.8 0.4 1.2 1 0 0 1 1 1 0 THUMP domain RRF_GI PF12614.3 gi|57641003|ref|YP_183481.1| - 0.033 13.9 0.2 0.037 13.8 0.2 1.1 1 0 0 1 1 1 0 Ribosome recycling factor DUF972 PF06156.8 gi|57641003|ref|YP_183481.1| - 0.1 12.9 1.4 0.11 12.9 0.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF972) DUF4315 PF14193.1 gi|57641003|ref|YP_183481.1| - 0.18 11.7 4.8 0.31 10.9 2.5 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4315) YvrJ PF12841.2 gi|57641003|ref|YP_183481.1| - 0.48 9.7 3.7 2.1 7.6 2.6 2.1 1 1 0 1 1 1 0 YvrJ protein family PemK PF02452.12 gi|57641004|ref|YP_183482.1| - 1e-12 48.2 0.0 1.1e-12 48.1 0.0 1.0 1 0 0 1 1 1 1 PemK-like protein Vps51 PF08700.6 gi|57641005|ref|YP_183483.1| - 0.0059 16.4 0.9 0.0067 16.2 0.6 1.2 1 0 0 1 1 1 1 Vps51/Vps67 NPV_P10 PF05531.7 gi|57641005|ref|YP_183483.1| - 0.02 15.1 0.2 0.021 15.0 0.1 1.0 1 0 0 1 1 1 0 Nucleopolyhedrovirus P10 protein Occludin_ELL PF07303.8 gi|57641005|ref|YP_183483.1| - 0.028 15.1 2.0 0.03 15.0 1.4 1.0 1 0 0 1 1 1 0 Occludin homology domain FlaC_arch PF05377.6 gi|57641005|ref|YP_183483.1| - 0.029 14.2 4.8 0.039 13.8 3.3 1.3 1 0 0 1 1 1 0 Flagella accessory protein C (FlaC) TPR_MLP1_2 PF07926.7 gi|57641005|ref|YP_183483.1| - 0.035 13.8 5.3 0.037 13.7 3.7 1.0 1 0 0 1 1 1 0 TPR/MLP1/MLP2-like protein DASH_Dad4 PF08650.5 gi|57641005|ref|YP_183483.1| - 0.051 13.4 0.2 0.057 13.3 0.1 1.1 1 0 0 1 1 1 0 DASH complex subunit Dad4 ADIP PF11559.3 gi|57641005|ref|YP_183483.1| - 0.056 13.3 5.0 0.055 13.3 3.4 1.0 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding Ead_Ea22 PF13935.1 gi|57641005|ref|YP_183483.1| - 0.06 13.6 4.7 0.065 13.5 3.3 1.0 1 0 0 1 1 1 0 Ead/Ea22-like protein DASH_Dad3 PF08656.5 gi|57641005|ref|YP_183483.1| - 0.067 12.8 1.6 0.13 11.9 1.1 1.6 1 1 0 1 1 1 0 DASH complex subunit Dad3 IncA PF04156.9 gi|57641005|ref|YP_183483.1| - 0.071 12.7 6.2 0.077 12.5 4.3 1.0 1 0 0 1 1 1 0 IncA protein BLOC1_2 PF10046.4 gi|57641005|ref|YP_183483.1| - 0.076 13.1 2.9 0.082 13.0 2.0 1.1 1 0 0 1 1 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF3251 PF11622.3 gi|57641005|ref|YP_183483.1| - 0.08 12.3 1.2 0.081 12.3 0.8 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3251) RmuC PF02646.11 gi|57641005|ref|YP_183483.1| - 0.085 11.6 1.7 0.079 11.7 1.2 1.0 1 0 0 1 1 1 0 RmuC family DUF2730 PF10805.3 gi|57641005|ref|YP_183483.1| - 0.087 12.5 0.8 0.095 12.4 0.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2730) GAS PF13851.1 gi|57641005|ref|YP_183483.1| - 0.11 11.7 7.2 0.12 11.5 5.0 1.0 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding Prefoldin PF02996.12 gi|57641005|ref|YP_183483.1| - 0.12 12.0 4.9 0.13 11.8 3.4 1.2 1 0 0 1 1 1 0 Prefoldin subunit Dor1 PF04124.7 gi|57641005|ref|YP_183483.1| - 0.13 10.6 1.3 0.13 10.6 0.9 1.0 1 0 0 1 1 1 0 Dor1-like family Phage_GP20 PF06810.6 gi|57641005|ref|YP_183483.1| - 0.13 11.6 5.3 0.13 11.6 3.7 1.0 1 0 0 1 1 1 0 Phage minor structural protein GP20 DASH_Dam1 PF08653.5 gi|57641005|ref|YP_183483.1| - 0.16 11.7 0.2 0.28 10.9 0.1 1.4 1 1 0 1 1 1 0 DASH complex subunit Dam1 DUF1664 PF07889.7 gi|57641005|ref|YP_183483.1| - 0.16 11.7 1.6 0.17 11.6 1.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) DivIVA PF05103.8 gi|57641005|ref|YP_183483.1| - 0.17 11.9 6.5 0.18 11.8 4.5 1.1 1 0 0 1 1 1 0 DivIVA protein Spc24 PF08286.6 gi|57641005|ref|YP_183483.1| - 0.17 11.5 6.4 0.18 11.4 4.4 1.0 1 0 0 1 1 1 0 Spc24 subunit of Ndc80 DUF4298 PF14131.1 gi|57641005|ref|YP_183483.1| - 0.21 11.4 1.5 0.27 11.1 1.1 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4298) Rootletin PF15035.1 gi|57641005|ref|YP_183483.1| - 0.23 11.3 6.4 0.24 11.3 4.4 1.0 1 0 0 1 1 1 0 Ciliary rootlet component, centrosome cohesion Syntaxin PF00804.20 gi|57641005|ref|YP_183483.1| - 0.25 11.5 3.2 0.54 10.4 2.2 1.6 1 1 0 1 1 1 0 Syntaxin Fzo_mitofusin PF04799.8 gi|57641005|ref|YP_183483.1| - 0.26 10.6 2.7 0.25 10.6 1.9 1.1 1 0 0 1 1 1 0 fzo-like conserved region TBPIP PF07106.8 gi|57641005|ref|YP_183483.1| - 0.26 10.8 5.2 0.28 10.6 3.6 1.1 1 0 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Latarcin PF10279.4 gi|57641005|ref|YP_183483.1| - 0.29 11.3 6.0 0.33 11.1 4.2 1.1 1 0 0 1 1 1 0 Latarcin precursor Med15_fungi PF05397.7 gi|57641005|ref|YP_183483.1| - 0.36 10.8 2.4 0.38 10.7 1.7 1.0 1 0 0 1 1 1 0 Mediator complex subunit 15 DUF2203 PF09969.4 gi|57641005|ref|YP_183483.1| - 0.39 10.9 2.8 0.41 10.8 1.9 1.0 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2203) DUF972 PF06156.8 gi|57641005|ref|YP_183483.1| - 0.41 11.0 5.7 0.41 11.0 4.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF972) DUF342 PF03961.8 gi|57641005|ref|YP_183483.1| - 0.41 9.0 5.6 0.4 9.0 3.9 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF342) Seryl_tRNA_N PF02403.17 gi|57641005|ref|YP_183483.1| - 0.41 10.6 7.6 0.44 10.5 5.2 1.1 1 0 0 1 1 1 0 Seryl-tRNA synthetase N-terminal domain DUF3198 PF11433.3 gi|57641005|ref|YP_183483.1| - 0.45 10.4 5.2 0.79 9.6 1.4 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3198) DUF4140 PF13600.1 gi|57641005|ref|YP_183483.1| - 0.57 10.6 4.0 0.62 10.5 2.8 1.1 1 0 0 1 1 1 0 N-terminal domain of unknown function (DUF4140) End3 PF12761.2 gi|57641005|ref|YP_183483.1| - 0.82 9.2 4.7 0.78 9.3 3.3 1.1 1 0 0 1 1 1 0 Actin cytoskeleton-regulatory complex protein END3 DUF2951 PF11166.3 gi|57641005|ref|YP_183483.1| - 0.83 9.5 5.5 1.4 8.7 2.6 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF2951) Ax_dynein_light PF10211.4 gi|57641005|ref|YP_183483.1| - 0.85 9.4 8.6 0.85 9.4 5.9 1.0 1 0 0 1 1 1 0 Axonemal dynein light chain Matrilin_ccoil PF10393.4 gi|57641005|ref|YP_183483.1| - 0.86 9.0 4.1 1.5 8.2 2.9 1.5 1 1 0 1 1 1 0 Trimeric coiled-coil oligomerisation domain of matrilin DivIC PF04977.10 gi|57641005|ref|YP_183483.1| - 0.97 8.9 5.8 1.1 8.7 4.0 1.2 1 0 0 1 1 1 0 Septum formation initiator ACCA PF03255.9 gi|57641005|ref|YP_183483.1| - 1.2 8.6 4.1 1.3 8.6 2.8 1.0 1 0 0 1 1 1 0 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit APG6 PF04111.7 gi|57641005|ref|YP_183483.1| - 1.7 7.6 8.8 1.8 7.4 6.1 1.0 1 0 0 1 1 1 0 Autophagy protein Apg6 Vfa1 PF08432.5 gi|57641005|ref|YP_183483.1| - 1.9 8.4 6.3 2 8.3 4.4 1.0 1 0 0 1 1 1 0 AAA-ATPase Vps4-associated protein 1 DUF3373 PF11853.3 gi|57641005|ref|YP_183483.1| - 2.3 6.6 4.2 2.2 6.7 2.9 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3373) BBIP10 PF14777.1 gi|57641005|ref|YP_183483.1| - 2.9 7.3 6.8 0.43 9.9 1.2 1.9 1 1 1 2 2 2 0 Cilia BBSome complex subunit 10 G-gamma PF00631.17 gi|57641005|ref|YP_183483.1| - 3.1 7.6 5.0 4.6 7.0 3.4 1.5 1 1 0 1 1 1 0 GGL domain DUF1049 PF06305.6 gi|57641005|ref|YP_183483.1| - 3.4 7.2 5.0 3.6 7.1 2.2 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF1049) GrpE PF01025.14 gi|57641005|ref|YP_183483.1| - 3.7 7.0 7.7 3.8 7.0 5.4 1.0 1 0 0 1 1 1 0 GrpE V_ATPase_I PF01496.14 gi|57641005|ref|YP_183483.1| - 4.3 5.0 5.5 4 5.1 3.8 1.0 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family OmpH PF03938.9 gi|57641005|ref|YP_183483.1| - 4.4 7.2 6.3 4.7 7.1 4.4 1.0 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) HAUS5 PF14817.1 gi|57641005|ref|YP_183483.1| - 4.5 5.7 7.8 4.7 5.6 5.4 1.0 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 5 Phosphodiest PF01663.17 gi|57641006|ref|YP_183484.1| - 8.1e-55 186.6 0.0 9.4e-55 186.4 0.0 1.0 1 0 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Metalloenzyme PF01676.13 gi|57641006|ref|YP_183484.1| - 7.1e-11 41.9 0.1 1.1e-07 31.4 0.0 2.4 2 0 0 2 2 2 2 Metalloenzyme superfamily Sulfatase PF00884.18 gi|57641006|ref|YP_183484.1| - 1.5e-08 34.1 0.0 0.0044 16.2 0.0 2.3 1 1 0 2 2 2 2 Sulfatase Capsid-VNN PF11729.3 gi|57641006|ref|YP_183484.1| - 0.18 10.7 0.0 0.29 10.0 0.0 1.2 1 0 0 1 1 1 0 nodavirus capsid protein HEPN PF05168.9 gi|57641007|ref|YP_183485.1| - 7e-27 93.6 0.9 8.8e-27 93.3 0.6 1.1 1 0 0 1 1 1 1 HEPN domain PaREP1 PF05942.6 gi|57641007|ref|YP_183485.1| - 0.0094 15.8 0.6 0.18 11.6 0.0 2.1 2 0 0 2 2 2 1 Archaeal PaREP1/PaREP8 family NTP_transf_2 PF01909.18 gi|57641008|ref|YP_183486.1| - 4.3e-14 52.6 0.9 4.9e-14 52.4 0.6 1.1 1 0 0 1 1 1 1 Nucleotidyltransferase domain DUF3783 PF12646.2 gi|57641009|ref|YP_183487.1| - 2.8e-16 58.9 1.3 2.6e-15 55.8 0.1 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF3783) Peripla_BP_1 PF00532.16 gi|57641009|ref|YP_183487.1| - 0.03 13.5 0.0 0.039 13.1 0.0 1.1 1 0 0 1 1 1 0 Periplasmic binding proteins and sugar binding domain of LacI family DUF4423 PF14394.1 gi|57641009|ref|YP_183487.1| - 0.065 12.7 0.0 0.099 12.1 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) PIN PF01850.16 gi|57641010|ref|YP_183488.1| - 0.034 14.4 0.1 3.2 8.0 0.0 2.0 1 1 1 2 2 2 0 PIN domain YkyA PF10368.4 gi|57641010|ref|YP_183488.1| - 0.08 12.2 0.1 0.089 12.1 0.0 1.0 1 0 0 1 1 1 0 Putative cell-wall binding lipoprotein Antitoxin-MazE PF04014.13 gi|57641011|ref|YP_183489.1| - 6.4e-14 51.3 1.9 6.4e-14 51.3 1.3 1.6 2 0 0 2 2 2 1 Antidote-toxin recognition MazE FeoA PF04023.9 gi|57641011|ref|YP_183489.1| - 0.0051 16.7 0.3 0.087 12.7 0.1 2.3 1 1 1 2 2 2 1 FeoA domain AbrB-like PF14250.1 gi|57641011|ref|YP_183489.1| - 0.0082 16.0 0.0 0.014 15.2 0.0 1.4 1 1 0 1 1 1 1 AbrB-like transcriptional regulator CDC48_N PF02359.13 gi|57641011|ref|YP_183489.1| - 0.067 13.1 0.0 0.23 11.4 0.0 1.4 1 1 0 1 1 1 0 Cell division protein 48 (CDC48), N-terminal domain Ribosomal_S7 PF00177.16 gi|57641012|ref|YP_183490.1| - 3.3e-41 140.3 3.5 4.4e-41 139.9 2.5 1.2 1 0 0 1 1 1 1 Ribosomal protein S7p/S5e Ribosom_S12_S23 PF00164.20 gi|57641013|ref|YP_183491.1| - 5.9e-43 145.1 1.7 6.8e-43 144.9 1.2 1.0 1 0 0 1 1 1 1 Ribosomal protein S12/S23 KH_2 PF07650.12 gi|57641014|ref|YP_183492.1| - 4.7e-23 80.5 4.2 1e-19 69.8 0.4 2.1 1 1 1 2 2 2 2 KH domain KH_5 PF13184.1 gi|57641014|ref|YP_183492.1| - 6.3e-07 29.1 1.1 4.8e-06 26.2 0.2 2.2 2 0 0 2 2 2 1 NusA-like KH domain KH_4 PF13083.1 gi|57641014|ref|YP_183492.1| - 9.9e-07 28.3 1.0 0.00073 19.1 0.1 2.2 2 0 0 2 2 2 2 KH domain KH_1 PF00013.24 gi|57641014|ref|YP_183492.1| - 0.0023 17.5 4.8 0.58 9.8 0.2 2.6 1 1 1 2 2 2 2 KH domain KH_3 PF13014.1 gi|57641014|ref|YP_183492.1| - 0.0059 16.2 0.8 1.9 8.2 0.1 3.1 4 0 0 4 4 4 2 KH domain PfkB PF00294.19 gi|57641014|ref|YP_183492.1| - 0.031 13.4 0.0 0.034 13.2 0.0 1.1 1 0 0 1 1 1 0 pfkB family carbohydrate kinase Peptidase_S24 PF00717.18 gi|57641014|ref|YP_183492.1| - 0.077 12.6 0.0 0.29 10.8 0.0 2.0 2 0 0 2 2 2 0 Peptidase S24-like Ribosomal_L7Ae PF01248.21 gi|57641015|ref|YP_183493.1| - 1.2e-19 69.5 0.0 1.4e-19 69.3 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family RNA_pol_Rpb1_5 PF04998.12 gi|57641016|ref|YP_183494.1| - 6.5e-56 189.6 0.9 8.1e-56 189.3 0.7 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 BAG PF02179.11 gi|57641016|ref|YP_183494.1| - 0.24 11.5 2.5 0.87 9.7 0.6 2.6 3 0 0 3 3 3 0 BAG domain Imm45 PF15603.1 gi|57641016|ref|YP_183494.1| - 1.4 9.1 4.2 30 4.8 0.0 3.1 3 0 0 3 3 3 0 Immunity protein 45 RNA_pol_Rpb1_1 PF04997.7 gi|57641017|ref|YP_183495.1| - 1.6e-95 320.1 0.0 2.7e-95 319.4 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 1 RNA_pol_Rpb1_2 PF00623.15 gi|57641017|ref|YP_183495.1| - 4.8e-70 234.8 0.0 8.2e-70 234.0 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 2 RNA_pol_Rpb1_3 PF04983.13 gi|57641017|ref|YP_183495.1| - 2.1e-38 131.5 0.0 3.7e-38 130.7 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 3 RNA_pol_Rpb1_5 PF04998.12 gi|57641017|ref|YP_183495.1| - 1.5e-32 112.9 0.1 3.4e-32 111.8 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 RNA_pol_Rpb1_4 PF05000.12 gi|57641017|ref|YP_183495.1| - 4.1e-32 110.1 0.0 9.3e-32 108.9 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 4 zf-ribbon_3 PF13248.1 gi|57641017|ref|YP_183495.1| - 0.22 10.7 6.2 0.3 10.3 1.4 2.8 2 1 0 2 2 2 0 zinc-ribbon domain GFA PF04828.9 gi|57641017|ref|YP_183495.1| - 0.46 10.4 1.5 0.5 10.3 0.0 1.8 2 0 0 2 2 1 0 Glutathione-dependent formaldehyde-activating enzyme DZR PF12773.2 gi|57641017|ref|YP_183495.1| - 2.8 7.8 6.0 1e+02 2.8 4.1 2.4 1 1 0 1 1 1 0 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|57641017|ref|YP_183495.1| - 3.3 7.3 5.6 2.2 7.8 0.1 2.9 3 0 0 3 3 3 0 zinc-ribbon domain DUF164 PF02591.10 gi|57641017|ref|YP_183495.1| - 3.9 7.3 5.4 3.8 7.4 0.1 3.0 3 0 0 3 3 3 0 Putative zinc ribbon domain Nudix_N_2 PF14803.1 gi|57641017|ref|YP_183495.1| - 6 6.6 7.5 1 9.1 0.1 3.0 3 0 0 3 3 3 0 Nudix N-terminal RNA_pol_Rpb2_6 PF00562.23 gi|57641018|ref|YP_183496.1| - 3.9e-127 424.1 0.0 5.3e-127 423.7 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 6 RNA_pol_Rpb2_1 PF04563.10 gi|57641018|ref|YP_183496.1| - 2e-65 219.5 0.0 2.8e-65 219.0 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase beta subunit RNA_pol_Rpb2_2 PF04561.9 gi|57641018|ref|YP_183496.1| - 3.2e-41 140.8 0.1 6.6e-41 139.8 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 2 RNA_pol_Rpb2_7 PF04560.15 gi|57641018|ref|YP_183496.1| - 1.8e-28 98.5 0.1 3.9e-28 97.5 0.1 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 7 RNA_pol_Rpb2_3 PF04565.11 gi|57641018|ref|YP_183496.1| - 2.1e-28 97.8 0.0 3.8e-28 97.0 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 3 RNA_pol_Rpb2_4 PF04566.8 gi|57641018|ref|YP_183496.1| - 2.9e-20 71.8 2.0 8.1e-20 70.4 1.4 1.8 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 4 RNA_pol_Rpb2_5 PF04567.12 gi|57641018|ref|YP_183496.1| - 1e-13 50.9 3.1 2.3e-13 49.9 2.2 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 5 Auto_anti-p27 PF06677.7 gi|57641018|ref|YP_183496.1| - 0.0023 17.6 0.9 0.0048 16.6 0.6 1.5 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) TF_Zn_Ribbon PF08271.7 gi|57641018|ref|YP_183496.1| - 0.057 12.7 2.1 0.57 9.5 1.4 2.5 1 1 1 2 2 2 0 TFIIB zinc-binding zf-ribbon_3 PF13248.1 gi|57641018|ref|YP_183496.1| - 2.1 7.6 4.8 0.81 8.9 1.0 2.0 2 1 0 2 2 2 0 zinc-ribbon domain RNA_pol_Rpb5_C PF01191.14 gi|57641019|ref|YP_183497.1| - 1.4e-33 114.3 0.2 1.5e-33 114.1 0.1 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb5, C-terminal domain Rad50_zn_hook PF04423.9 gi|57641019|ref|YP_183497.1| - 0.0028 17.0 1.1 0.0038 16.6 0.8 1.2 1 0 0 1 1 1 1 Rad50 zinc hook motif ELK PF03789.8 gi|57641019|ref|YP_183497.1| - 0.051 13.3 1.2 0.082 12.7 0.1 1.8 2 0 0 2 2 2 0 ELK domain CDC48_N PF02359.13 gi|57641019|ref|YP_183497.1| - 0.12 12.3 0.0 1.4 8.8 0.0 2.0 1 1 1 2 2 2 0 Cell division protein 48 (CDC48), N-terminal domain Thioredoxin_3 PF13192.1 gi|57641020|ref|YP_183498.1| - 2.7e-23 81.5 0.0 5.8e-15 54.8 0.0 2.2 2 0 0 2 2 2 2 Thioredoxin domain Thioredoxin PF00085.15 gi|57641020|ref|YP_183498.1| - 1.8e-12 46.8 0.2 1.8e-05 24.3 0.0 2.1 2 0 0 2 2 2 2 Thioredoxin Thioredoxin_2 PF13098.1 gi|57641020|ref|YP_183498.1| - 6.9e-11 42.3 6.7 0.0001 22.4 0.3 3.9 2 2 0 2 2 2 2 Thioredoxin-like domain Glutaredoxin PF00462.19 gi|57641020|ref|YP_183498.1| - 1.1e-08 34.9 2.1 0.00046 20.1 0.2 2.6 2 1 0 2 2 2 2 Glutaredoxin ABC_transp_aux PF09822.4 gi|57641020|ref|YP_183498.1| - 3e-08 33.4 0.0 4.5e-05 23.0 0.0 2.1 2 0 0 2 2 2 2 ABC-type uncharacterized transport system DUF836 PF05768.9 gi|57641020|ref|YP_183498.1| - 1.4e-06 28.4 0.2 0.00015 21.9 0.1 2.3 2 0 0 2 2 2 1 Glutaredoxin-like domain (DUF836) Thioredoxin_9 PF14595.1 gi|57641020|ref|YP_183498.1| - 2.6e-06 27.0 0.1 0.00065 19.2 0.0 2.2 2 0 0 2 2 2 1 Thioredoxin TraF PF13728.1 gi|57641020|ref|YP_183498.1| - 5.8e-05 22.6 0.0 0.015 14.7 0.0 2.2 2 0 0 2 2 2 2 F plasmid transfer operon protein TrbC_Ftype PF09673.5 gi|57641020|ref|YP_183498.1| - 0.0052 16.3 0.0 0.51 9.9 0.0 2.3 2 0 0 2 2 2 1 Type-F conjugative transfer system pilin assembly protein DUF2120 PF09893.4 gi|57641020|ref|YP_183498.1| - 0.041 13.8 0.0 0.066 13.1 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2120) Thioredoxin_4 PF13462.1 gi|57641020|ref|YP_183498.1| - 0.048 13.6 2.7 3.1 7.7 0.0 3.0 2 1 1 3 3 3 0 Thioredoxin HyaE PF07449.6 gi|57641020|ref|YP_183498.1| - 0.048 13.5 0.0 0.18 11.7 0.0 1.9 2 1 0 2 2 2 0 Hydrogenase-1 expression protein HyaE Thioredoxin_7 PF13899.1 gi|57641020|ref|YP_183498.1| - 0.082 12.9 0.1 0.87 9.6 0.0 2.2 2 0 0 2 2 2 0 Thioredoxin-like DNA_pol3_tau_5 PF12170.3 gi|57641020|ref|YP_183498.1| - 0.11 12.3 0.0 0.25 11.2 0.0 1.5 2 0 0 2 2 2 0 DNA polymerase III tau subunit V interacting with alpha Prim-Pol PF09250.6 gi|57641020|ref|YP_183498.1| - 0.14 12.0 0.1 0.23 11.4 0.1 1.4 1 0 0 1 1 1 0 Bifunctional DNA primase/polymerase, N-terminal HTH_20 PF12840.2 gi|57641021|ref|YP_183499.1| - 3.2e-11 42.8 0.3 2.5e-08 33.5 0.0 2.6 3 0 0 3 3 3 2 Helix-turn-helix domain HTH_5 PF01022.15 gi|57641021|ref|YP_183499.1| - 3.2e-07 29.8 0.8 0.00017 21.1 0.1 2.4 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|57641021|ref|YP_183499.1| - 9.9e-07 28.0 2.4 0.0082 15.5 0.1 3.1 3 0 0 3 3 3 2 Winged helix-turn-helix DNA-binding MarR PF01047.17 gi|57641021|ref|YP_183499.1| - 2e-05 24.1 0.0 0.0023 17.5 0.0 2.5 2 0 0 2 2 2 1 MarR family HTH_11 PF08279.7 gi|57641021|ref|YP_183499.1| - 0.00062 19.3 0.1 0.23 11.1 0.0 2.6 2 0 0 2 2 2 1 HTH domain HTH_34 PF13601.1 gi|57641021|ref|YP_183499.1| - 0.0019 18.1 0.3 0.28 11.2 0.0 2.7 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_AsnC-type PF13404.1 gi|57641021|ref|YP_183499.1| - 0.0022 17.4 0.1 0.008 15.6 0.1 1.9 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain MarR_2 PF12802.2 gi|57641021|ref|YP_183499.1| - 0.0037 16.9 0.0 3.1 7.5 0.0 2.4 2 0 0 2 2 2 2 MarR family PadR PF03551.9 gi|57641021|ref|YP_183499.1| - 0.0047 16.6 0.0 0.013 15.2 0.0 1.7 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family FUR PF01475.14 gi|57641021|ref|YP_183499.1| - 0.0074 16.2 0.1 0.032 14.1 0.0 1.9 2 0 0 2 2 2 1 Ferric uptake regulator family HTH_27 PF13463.1 gi|57641021|ref|YP_183499.1| - 0.021 15.1 0.1 12 6.2 0.0 3.2 3 0 0 3 3 3 0 Winged helix DNA-binding domain IF2_N PF04760.10 gi|57641021|ref|YP_183499.1| - 0.023 14.3 0.3 0.32 10.7 0.0 2.4 2 0 0 2 2 2 0 Translation initiation factor IF-2, N-terminal region TrmB PF01978.14 gi|57641021|ref|YP_183499.1| - 0.031 13.9 1.9 4.9 6.9 0.0 2.8 3 0 0 3 3 3 0 Sugar-specific transcriptional regulator TrmB Pectate_lyase_2 PF06917.7 gi|57641021|ref|YP_183499.1| - 0.04 12.1 0.0 0.047 11.9 0.0 1.1 1 0 0 1 1 1 0 Periplasmic pectate lyase FeoC PF09012.5 gi|57641021|ref|YP_183499.1| - 0.05 13.3 0.0 9.6 6.0 0.0 2.5 2 0 0 2 2 2 0 FeoC like transcriptional regulator Epsilon_antitox PF08998.6 gi|57641021|ref|YP_183499.1| - 0.16 11.9 2.4 0.42 10.6 0.2 2.1 1 1 1 2 2 2 0 Bacterial epsilon antitoxin AF0941-like PF14591.1 gi|57641021|ref|YP_183499.1| - 1.4 9.0 6.6 9.1 6.3 3.6 2.2 1 1 1 2 2 2 0 AF0941-like Fer4 PF00037.22 gi|57641022|ref|YP_183500.1| - 6.1e-16 57.2 12.0 1.8e-08 33.6 0.8 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|57641022|ref|YP_183500.1| - 2.5e-14 52.4 10.0 2.4e-07 30.3 0.9 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|57641022|ref|YP_183500.1| - 3.8e-11 42.6 21.7 4e-08 32.9 7.8 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|57641022|ref|YP_183500.1| - 6e-11 42.5 6.8 9.8e-06 25.8 0.2 2.0 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|57641022|ref|YP_183500.1| - 7.4e-10 39.4 7.0 0.00011 22.8 1.3 2.1 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.1 gi|57641022|ref|YP_183500.1| - 9.7e-10 38.5 6.9 0.00013 22.1 0.3 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|57641022|ref|YP_183500.1| - 8.3e-09 34.8 12.3 9.6e-06 25.2 1.3 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|57641022|ref|YP_183500.1| - 2.4e-08 33.7 9.8 5.3e-08 32.5 6.8 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|57641022|ref|YP_183500.1| - 8.1e-07 28.9 23.9 4.7e-05 23.3 8.9 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|57641022|ref|YP_183500.1| - 2.2e-05 24.6 7.6 0.028 14.7 0.9 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|57641022|ref|YP_183500.1| - 3.2e-05 23.9 12.5 0.0012 19.0 2.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_3 PF12798.2 gi|57641022|ref|YP_183500.1| - 0.00021 21.6 19.1 0.015 15.8 3.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|57641022|ref|YP_183500.1| - 0.00033 21.1 13.5 0.0042 17.6 1.5 2.3 1 1 1 2 2 2 2 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|57641022|ref|YP_183500.1| - 0.00098 19.4 12.7 0.14 12.5 2.8 2.2 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|57641022|ref|YP_183500.1| - 0.014 15.8 15.3 0.029 14.7 2.4 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|57641022|ref|YP_183500.1| - 0.099 12.5 4.7 0.23 11.3 3.2 1.6 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_19 PF06902.6 gi|57641022|ref|YP_183500.1| - 9.9 6.0 10.1 1.1e+02 2.6 7.0 2.3 1 1 0 1 1 1 0 Divergent 4Fe-4S mono-cluster FAD_binding_3 PF01494.14 gi|57641023|ref|YP_183501.1| - 2e-16 59.9 1.8 4.5e-13 48.9 1.2 3.0 1 1 0 1 1 1 1 FAD binding domain DAO PF01266.19 gi|57641023|ref|YP_183501.1| - 3.8e-14 52.3 0.6 3.3e-06 26.2 0.0 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase Lycopene_cycl PF05834.7 gi|57641023|ref|YP_183501.1| - 2.1e-11 43.4 0.0 5.4e-11 42.0 0.0 1.5 1 1 0 1 1 1 1 Lycopene cyclase protein FAD_binding_2 PF00890.19 gi|57641023|ref|YP_183501.1| - 4.9e-09 35.5 1.6 0.00032 19.6 0.4 2.4 3 0 0 3 3 3 2 FAD binding domain FAD_oxidored PF12831.2 gi|57641023|ref|YP_183501.1| - 1e-08 34.6 0.9 5.7e-08 32.2 0.3 2.3 1 1 1 3 3 3 1 FAD dependent oxidoreductase Trp_halogenase PF04820.9 gi|57641023|ref|YP_183501.1| - 1.1e-06 27.5 0.5 0.0017 17.0 0.0 2.2 2 0 0 2 2 2 2 Tryptophan halogenase NAD_binding_8 PF13450.1 gi|57641023|ref|YP_183501.1| - 8.1e-06 25.7 0.2 3.5e-05 23.7 0.0 2.2 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.12 gi|57641023|ref|YP_183501.1| - 5e-05 22.4 0.9 0.001 18.2 0.1 2.5 2 0 0 2 2 2 1 Thi4 family Pyr_redox_2 PF07992.9 gi|57641023|ref|YP_183501.1| - 8.6e-05 22.5 3.5 0.00027 20.8 1.7 2.1 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|57641023|ref|YP_183501.1| - 0.00021 19.8 0.4 0.0016 17.0 0.1 2.0 2 0 0 2 2 2 1 HI0933-like protein GIDA PF01134.17 gi|57641023|ref|YP_183501.1| - 0.0023 16.8 0.6 0.0061 15.4 0.1 1.9 2 0 0 2 2 2 1 Glucose inhibited division protein A GDI PF00996.13 gi|57641023|ref|YP_183501.1| - 0.0057 15.0 0.0 0.019 13.3 0.0 1.7 2 0 0 2 2 2 1 GDP dissociation inhibitor 3HCDH_N PF02737.13 gi|57641023|ref|YP_183501.1| - 0.007 16.0 0.6 0.015 14.9 0.1 1.7 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain SE PF08491.5 gi|57641023|ref|YP_183501.1| - 0.049 12.4 0.0 0.099 11.4 0.0 1.4 1 0 0 1 1 1 0 Squalene epoxidase DUF596 PF04591.7 gi|57641023|ref|YP_183501.1| - 0.053 13.4 0.1 0.13 12.1 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function, DUF596 Sdh5 PF03937.11 gi|57641023|ref|YP_183501.1| - 0.054 13.1 0.1 15 5.3 0.0 2.7 2 0 0 2 2 2 0 Flavinator of succinate dehydrogenase BCAS2 PF05700.6 gi|57641023|ref|YP_183501.1| - 0.072 12.5 0.1 0.12 11.8 0.1 1.3 1 0 0 1 1 1 0 Breast carcinoma amplified sequence 2 (BCAS2) Yip1 PF04893.12 gi|57641025|ref|YP_183503.1| - 0.021 14.3 28.4 0.036 13.5 19.3 1.7 1 1 0 1 1 1 0 Yip1 domain TctB PF07331.6 gi|57641025|ref|YP_183503.1| - 0.034 13.7 26.4 0.091 12.4 18.3 1.6 1 1 0 1 1 1 0 Tripartite tricarboxylate transporter TctB family Cytochrom_B_N PF00033.14 gi|57641025|ref|YP_183503.1| - 0.93 8.8 14.9 1.4 8.2 10.3 1.3 1 0 0 1 1 1 0 Cytochrome b(N-terminal)/b6/petB SurA_N_3 PF13624.1 gi|57641025|ref|YP_183503.1| - 5.4 6.9 9.5 0.34 10.8 0.5 2.1 2 0 0 2 2 2 0 SurA N-terminal domain Topoisom_bac PF01131.15 gi|57641026|ref|YP_183504.1| - 2.5e-120 402.0 0.3 8.4e-71 238.9 0.1 2.3 2 0 0 2 2 2 2 DNA topoisomerase LAGLIDADG_3 PF14528.1 gi|57641026|ref|YP_183504.1| - 1.4e-18 66.9 0.0 4.7e-14 52.3 0.0 3.3 2 0 0 2 2 2 2 LAGLIDADG-like domain Toprim PF01751.17 gi|57641026|ref|YP_183504.1| - 5.6e-17 61.5 0.1 2.7e-16 59.3 0.0 2.3 2 0 0 2 2 2 1 Toprim domain zf-C4_Topoisom PF01396.14 gi|57641026|ref|YP_183504.1| - 3.9e-14 51.8 1.9 9.8e-14 50.5 1.3 1.7 1 0 0 1 1 1 1 Topoisomerase DNA binding C4 zinc finger Intein_splicing PF14890.1 gi|57641026|ref|YP_183504.1| - 1.5e-11 43.7 0.0 2e-10 40.1 0.0 2.4 2 1 0 2 2 2 1 Intein splicing domain Hom_end PF05204.9 gi|57641026|ref|YP_183504.1| - 0.042 13.7 0.0 0.96 9.4 0.0 2.4 2 0 0 2 2 2 0 Homing endonuclease ADK_lid PF05191.9 gi|57641026|ref|YP_183504.1| - 0.1 12.2 0.3 0.24 11.0 0.2 1.6 1 0 0 1 1 1 0 Adenylate kinase, active site lid DUF4364 PF14277.1 gi|57641026|ref|YP_183504.1| - 0.28 10.7 2.9 0.2 11.2 0.3 2.0 3 0 0 3 3 3 0 Domain of unknown function (DUF4364) DUF1936 PF09151.5 gi|57641026|ref|YP_183504.1| - 3.3 7.2 8.4 0.36 10.3 2.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1936) AAA_17 PF13207.1 gi|57641027|ref|YP_183505.1| - 0.018 15.8 0.1 0.043 14.6 0.0 1.7 2 0 0 2 2 2 0 AAA domain TIP49 PF06068.8 gi|57641027|ref|YP_183505.1| - 0.079 11.6 0.0 0.098 11.3 0.0 1.1 1 0 0 1 1 1 0 TIP49 C-terminus AAA_33 PF13671.1 gi|57641027|ref|YP_183505.1| - 0.092 12.6 0.0 0.26 11.1 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.1 gi|57641027|ref|YP_183505.1| - 0.12 11.7 0.0 0.21 10.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain ThiS PF02597.15 gi|57641028|ref|YP_183506.1| - 3.4e-10 40.2 0.9 3.9e-10 40.0 0.6 1.0 1 0 0 1 1 1 1 ThiS family Ub-Mut7C PF14451.1 gi|57641028|ref|YP_183506.1| - 0.00088 18.7 0.5 0.00097 18.6 0.4 1.1 1 0 0 1 1 1 1 Mut7-C ubiquitin TGS PF02824.16 gi|57641028|ref|YP_183506.1| - 0.002 17.8 0.1 0.0024 17.6 0.1 1.2 1 0 0 1 1 1 1 TGS domain Lambda_tail_I PF06805.7 gi|57641028|ref|YP_183506.1| - 0.0043 16.8 0.3 0.006 16.3 0.2 1.3 1 0 0 1 1 1 1 Bacteriophage lambda tail assembly protein I Oxidored_molyb PF00174.14 gi|57641028|ref|YP_183506.1| - 0.11 11.9 0.0 0.12 11.8 0.0 1.0 1 0 0 1 1 1 0 Oxidoreductase molybdopterin binding domain Aminotran_1_2 PF00155.16 gi|57641029|ref|YP_183507.1| - 1.5e-60 205.1 0.0 1.7e-60 204.9 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|57641029|ref|YP_183507.1| - 3.3e-08 32.9 0.0 2.5e-07 30.0 0.0 1.9 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.16 gi|57641029|ref|YP_183507.1| - 2.2e-06 27.0 0.0 3.3e-06 26.4 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.14 gi|57641029|ref|YP_183507.1| - 1.9e-05 23.5 0.0 0.0014 17.4 0.0 2.8 2 1 1 3 3 3 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.15 gi|57641029|ref|YP_183507.1| - 0.034 12.4 0.0 0.054 11.7 0.0 1.2 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme DUF340 PF03956.8 gi|57641030|ref|YP_183508.1| - 0.00024 20.4 7.7 0.00028 20.2 5.3 1.0 1 0 0 1 1 1 1 Membrane protein of unknown function (DUF340) CstA PF02554.9 gi|57641030|ref|YP_183508.1| - 0.13 10.8 3.4 0.14 10.7 2.4 1.1 1 0 0 1 1 1 0 Carbon starvation protein CstA DUF986 PF06173.7 gi|57641030|ref|YP_183508.1| - 0.2 11.4 1.6 0.23 11.2 1.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF986) MFS_1 PF07690.11 gi|57641030|ref|YP_183508.1| - 0.21 10.2 9.5 0.23 10.1 6.6 1.1 1 0 0 1 1 1 0 Major Facilitator Superfamily DUF897 PF05982.7 gi|57641030|ref|YP_183508.1| - 0.99 8.1 7.9 1.1 7.9 5.5 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF897) YjgP_YjgQ PF03739.9 gi|57641030|ref|YP_183508.1| - 5 5.7 10.4 5.6 5.5 7.2 1.0 1 0 0 1 1 1 0 Predicted permease YjgP/YjgQ family CoA_binding_3 PF13727.1 gi|57641030|ref|YP_183508.1| - 6.8 6.4 8.8 5.4 6.7 5.6 1.3 1 1 0 1 1 1 0 CoA-binding domain DUF340 PF03956.8 gi|57641031|ref|YP_183509.1| - 1.5e-61 207.0 13.0 1.8e-61 206.8 9.0 1.0 1 0 0 1 1 1 1 Membrane protein of unknown function (DUF340) Colicin_V PF02674.11 gi|57641031|ref|YP_183509.1| - 0.0098 15.7 1.2 0.0098 15.7 0.8 3.0 1 1 1 2 2 2 1 Colicin V production protein CHAD PF05235.9 gi|57641032|ref|YP_183510.1| - 0.0032 17.0 1.1 0.12 11.9 0.1 2.2 2 0 0 2 2 2 1 CHAD domain DUF29 PF01724.11 gi|57641032|ref|YP_183510.1| - 0.079 12.8 0.2 3.1 7.6 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function DUF29 AAA_18 PF13238.1 gi|57641032|ref|YP_183510.1| - 0.081 13.2 2.5 0.28 11.4 0.1 2.3 2 1 0 2 2 2 0 AAA domain ALIX_LYPXL_bnd PF13949.1 gi|57641032|ref|YP_183510.1| - 0.22 10.4 3.6 0.27 10.1 0.1 2.2 2 1 0 2 2 2 0 ALIX V-shaped domain binding to HIV Cep57_MT_bd PF06657.8 gi|57641032|ref|YP_183510.1| - 0.68 9.9 5.2 0.34 10.8 0.2 2.8 2 2 0 2 2 2 0 Centrosome microtubule-binding domain of Cep57 IncA PF04156.9 gi|57641032|ref|YP_183510.1| - 9 5.8 7.2 2.1 7.8 0.6 2.2 2 0 0 2 2 2 0 IncA protein Ribosomal_L44 PF00935.14 gi|57641033|ref|YP_183511.1| - 2e-29 101.3 5.6 2.9e-29 100.8 3.9 1.2 1 0 0 1 1 1 1 Ribosomal protein L44 zf-ISL3 PF14690.1 gi|57641033|ref|YP_183511.1| - 0.0015 18.4 4.4 0.45 10.5 0.1 2.3 2 0 0 2 2 2 2 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Ribosomal_L33 PF00471.15 gi|57641033|ref|YP_183511.1| - 0.0035 17.5 2.0 0.0035 17.5 1.4 2.2 2 0 0 2 2 2 1 Ribosomal protein L33 NOB1_Zn_bind PF08772.6 gi|57641033|ref|YP_183511.1| - 0.013 15.2 1.9 0.045 13.5 0.1 2.0 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like Elf1 PF05129.8 gi|57641033|ref|YP_183511.1| - 0.02 14.5 3.3 0.28 10.8 0.2 2.2 1 1 1 2 2 2 0 Transcription elongation factor Elf1 like Nudix_N_2 PF14803.1 gi|57641033|ref|YP_183511.1| - 0.11 12.1 2.4 6.2 6.6 0.1 2.2 2 0 0 2 2 2 0 Nudix N-terminal zf-Di19 PF05605.7 gi|57641033|ref|YP_183511.1| - 0.14 12.2 1.1 4.2 7.5 0.1 2.1 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding Zn-ribbon_8 PF09723.5 gi|57641033|ref|YP_183511.1| - 0.14 12.0 1.3 14 5.7 0.1 2.3 2 0 0 2 2 2 0 Zinc ribbon domain HypA PF01155.14 gi|57641033|ref|YP_183511.1| - 0.17 11.5 0.9 0.68 9.6 0.6 1.8 1 1 0 1 1 1 0 Hydrogenase expression/synthesis hypA family DUF2296 PF10058.4 gi|57641033|ref|YP_183511.1| - 0.38 10.5 1.6 16 5.3 0.3 2.2 2 0 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) Cys_rich_KTR PF14205.1 gi|57641033|ref|YP_183511.1| - 1.4 8.3 4.0 0.82 9.1 0.5 2.0 2 0 0 2 2 2 0 Cysteine-rich KTR Ribosomal_S27e PF01667.12 gi|57641034|ref|YP_183512.1| - 1.8e-26 91.4 0.6 2e-26 91.2 0.4 1.0 1 0 0 1 1 1 1 Ribosomal protein S27 TF_Zn_Ribbon PF08271.7 gi|57641034|ref|YP_183512.1| - 0.0097 15.2 0.4 0.012 14.8 0.3 1.2 1 0 0 1 1 1 1 TFIIB zinc-binding A2L_zn_ribbon PF08792.5 gi|57641034|ref|YP_183512.1| - 0.016 14.6 0.3 1.1 8.7 0.1 2.3 2 0 0 2 2 2 0 A2L zinc ribbon domain zinc_ribbon_6 PF14599.1 gi|57641034|ref|YP_183512.1| - 0.018 14.8 0.0 0.024 14.4 0.0 1.1 1 0 0 1 1 1 0 Zinc-ribbon zf-ribbon_3 PF13248.1 gi|57641034|ref|YP_183512.1| - 0.029 13.5 0.5 2 7.7 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain HypA PF01155.14 gi|57641034|ref|YP_183512.1| - 0.042 13.5 0.1 0.048 13.3 0.1 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-RanBP PF00641.13 gi|57641034|ref|YP_183512.1| - 0.062 12.4 1.0 4 6.6 0.1 2.1 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others Zn-ribbon_8 PF09723.5 gi|57641034|ref|YP_183512.1| - 0.073 13.0 0.4 0.11 12.4 0.3 1.3 1 0 0 1 1 1 0 Zinc ribbon domain zinc_ribbon_4 PF13717.1 gi|57641034|ref|YP_183512.1| - 0.12 12.0 0.4 3.7 7.3 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|57641034|ref|YP_183512.1| - 0.14 11.7 0.4 3.8 7.1 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DNA_RNApol_7kD PF03604.8 gi|57641034|ref|YP_183512.1| - 0.15 11.5 2.5 0.48 9.9 1.7 1.8 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit DUF3797 PF12677.2 gi|57641034|ref|YP_183512.1| - 0.24 11.0 2.5 1.1 8.9 0.3 2.0 1 1 0 2 2 2 0 Domain of unknown function (DUF3797) zf-trcl PF13451.1 gi|57641034|ref|YP_183512.1| - 0.25 11.0 3.6 1.7 8.3 0.3 2.1 1 1 1 2 2 2 0 Probable zinc-binding domain zf-CCHC_6 PF15288.1 gi|57641034|ref|YP_183512.1| - 1 9.0 4.5 0.68 9.6 0.6 2.1 1 1 1 2 2 2 0 Zinc knuckle EIF_2_alpha PF07541.7 gi|57641035|ref|YP_183513.1| - 4e-29 100.6 0.2 4e-29 100.6 0.1 2.2 3 0 0 3 3 3 1 Eukaryotic translation initiation factor 2 alpha subunit S1 PF00575.18 gi|57641035|ref|YP_183513.1| - 3.5e-15 55.8 0.0 9.4e-15 54.4 0.0 1.8 1 0 0 1 1 1 1 S1 RNA binding domain PilZ PF07238.9 gi|57641035|ref|YP_183513.1| - 0.092 12.7 0.0 0.3 11.1 0.0 1.8 1 1 0 1 1 1 0 PilZ domain Nop10p PF04135.7 gi|57641036|ref|YP_183514.1| - 1.9e-28 97.9 1.5 2.1e-28 97.8 1.0 1.0 1 0 0 1 1 1 1 Nucleolar RNA-binding protein, Nop10p family RecR PF02132.10 gi|57641036|ref|YP_183514.1| - 4.4e-05 22.8 0.7 5.8e-05 22.4 0.5 1.2 1 0 0 1 1 1 1 RecR protein PolC_DP2 PF03833.8 gi|57641036|ref|YP_183514.1| - 0.00018 19.3 0.2 0.00018 19.3 0.1 1.0 1 0 0 1 1 1 1 DNA polymerase II large subunit DP2 Prim_Zn_Ribbon PF08273.7 gi|57641036|ref|YP_183514.1| - 0.00066 19.7 1.2 0.25 11.4 0.1 2.3 2 0 0 2 2 2 1 Zinc-binding domain of primase-helicase zf-NADH-PPase PF09297.6 gi|57641036|ref|YP_183514.1| - 0.00073 18.9 3.2 0.11 11.9 0.1 2.3 2 0 0 2 2 2 2 NADH pyrophosphatase zinc ribbon domain zf-ISL3 PF14690.1 gi|57641036|ref|YP_183514.1| - 0.0047 16.9 4.7 0.75 9.8 0.1 2.3 1 1 1 2 2 2 2 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-ribbon_3 PF13248.1 gi|57641036|ref|YP_183514.1| - 0.0054 15.8 7.0 0.09 12.0 4.9 2.1 1 1 1 2 2 2 2 zinc-ribbon domain DNA_ligase_ZBD PF03119.11 gi|57641036|ref|YP_183514.1| - 0.0079 15.8 4.2 0.079 12.6 0.6 2.2 2 0 0 2 2 2 1 NAD-dependent DNA ligase C4 zinc finger domain TF_Zn_Ribbon PF08271.7 gi|57641036|ref|YP_183514.1| - 0.008 15.4 6.7 0.4 10.0 0.3 2.2 1 1 1 2 2 2 2 TFIIB zinc-binding DUF35_N PF12172.3 gi|57641036|ref|YP_183514.1| - 0.012 15.4 2.5 0.012 15.4 1.8 2.4 1 1 1 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) DUF1272 PF06906.6 gi|57641036|ref|YP_183514.1| - 0.017 14.9 1.3 0.024 14.4 0.9 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1272) DZR PF12773.2 gi|57641036|ref|YP_183514.1| - 0.021 14.6 2.4 0.037 13.8 1.7 1.4 1 1 0 1 1 1 0 Double zinc ribbon zf-nanos PF05741.8 gi|57641036|ref|YP_183514.1| - 0.022 14.6 1.3 0.22 11.5 0.9 2.0 1 1 1 2 2 2 0 Nanos RNA binding domain zf-tcix PF14952.1 gi|57641036|ref|YP_183514.1| - 0.039 13.2 1.9 0.039 13.2 1.3 2.3 1 1 1 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding zf-FPG_IleRS PF06827.9 gi|57641036|ref|YP_183514.1| - 0.039 13.5 5.8 1.4 8.6 4.5 2.2 1 1 1 2 2 2 0 Zinc finger found in FPG and IleRS zf-TFIIB PF13453.1 gi|57641036|ref|YP_183514.1| - 0.058 12.5 1.7 3.3 6.9 0.1 2.2 2 0 0 2 2 2 0 Transcription factor zinc-finger zf-C4_Topoisom PF01396.14 gi|57641036|ref|YP_183514.1| - 0.081 12.4 2.6 2.9 7.4 0.1 2.3 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger Cys_rich_CPCC PF14206.1 gi|57641036|ref|YP_183514.1| - 0.081 12.4 3.1 0.35 10.4 2.2 1.9 1 1 0 1 1 1 0 Cysteine-rich CPCC zinc_ribbon_2 PF13240.1 gi|57641036|ref|YP_183514.1| - 0.086 12.3 6.7 1.7 8.2 4.6 2.1 1 1 0 1 1 1 0 zinc-ribbon domain NOB1_Zn_bind PF08772.6 gi|57641036|ref|YP_183514.1| - 0.1 12.4 2.1 1.2 9.0 1.5 2.0 1 1 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like UPF0547 PF10571.4 gi|57641036|ref|YP_183514.1| - 0.12 12.0 6.6 1.2 8.9 0.8 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 PhnA_Zn_Ribbon PF08274.7 gi|57641036|ref|YP_183514.1| - 0.14 11.9 2.9 5.1 6.9 0.2 2.2 2 0 0 2 2 2 0 PhnA Zinc-Ribbon Nudix_N_2 PF14803.1 gi|57641036|ref|YP_183514.1| - 0.16 11.6 3.3 2.2 8.0 0.2 2.4 1 1 1 2 2 2 0 Nudix N-terminal zf-H2C2_2 PF13465.1 gi|57641036|ref|YP_183514.1| - 0.21 11.9 2.6 5.1 7.5 0.2 2.5 2 0 0 2 2 2 0 Zinc-finger double domain A2L_zn_ribbon PF08792.5 gi|57641036|ref|YP_183514.1| - 0.29 10.6 1.9 6.2 6.3 0.1 2.1 2 0 0 2 2 2 0 A2L zinc ribbon domain ADK_lid PF05191.9 gi|57641036|ref|YP_183514.1| - 0.3 10.7 3.4 9.4 5.9 0.1 2.3 2 0 0 2 2 2 0 Adenylate kinase, active site lid Zn-ribbon_8 PF09723.5 gi|57641036|ref|YP_183514.1| - 0.42 10.6 6.0 79 3.3 4.3 2.2 1 1 0 1 1 1 0 Zinc ribbon domain Ribosomal_L32p PF01783.18 gi|57641036|ref|YP_183514.1| - 0.48 10.6 2.5 51 4.1 0.2 2.0 1 1 0 1 1 1 0 Ribosomal L32p protein family OrfB_Zn_ribbon PF07282.6 gi|57641036|ref|YP_183514.1| - 0.56 9.9 3.2 6.7 6.4 0.1 2.1 1 1 1 2 2 2 0 Putative transposase DNA-binding domain Rad50_zn_hook PF04423.9 gi|57641036|ref|YP_183514.1| - 0.6 9.6 0.2 0.6 9.6 0.2 2.5 3 0 0 3 3 2 0 Rad50 zinc hook motif DUF1610 PF07754.6 gi|57641036|ref|YP_183514.1| - 0.73 9.9 9.8 2.6 8.2 1.7 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) DUF329 PF03884.9 gi|57641036|ref|YP_183514.1| - 0.73 9.4 5.3 5.5 6.6 0.4 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF329) zf-IS66 PF13005.2 gi|57641036|ref|YP_183514.1| - 0.74 9.8 4.8 7.9 6.5 0.2 2.3 1 1 1 2 2 2 0 zinc-finger binding domain of transposase IS66 Lar_restr_allev PF14354.1 gi|57641036|ref|YP_183514.1| - 0.75 10.1 5.7 0.86 9.9 0.3 2.1 1 1 1 2 2 2 0 Restriction alleviation protein Lar Zn_Tnp_IS1595 PF12760.2 gi|57641036|ref|YP_183514.1| - 0.76 9.6 6.6 1.5 8.6 0.3 2.2 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Cys_rich_KTR PF14205.1 gi|57641036|ref|YP_183514.1| - 0.84 9.1 4.2 2 7.9 0.1 2.1 1 1 1 2 2 2 0 Cysteine-rich KTR Ogr_Delta PF04606.7 gi|57641036|ref|YP_183514.1| - 1.2 8.8 3.8 12 5.6 0.1 2.2 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger zf-CCHC PF00098.18 gi|57641036|ref|YP_183514.1| - 2.3 8.3 5.3 8.6 6.4 1.4 2.3 2 0 0 2 2 2 0 Zinc knuckle DUF3797 PF12677.2 gi|57641036|ref|YP_183514.1| - 3 7.5 4.8 10 5.8 0.5 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) Auto_anti-p27 PF06677.7 gi|57641036|ref|YP_183514.1| - 4 7.2 5.4 13 5.6 3.7 1.7 1 1 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) FdhE PF04216.7 gi|57641036|ref|YP_183514.1| - 8.7 5.9 6.3 3.3 7.3 0.9 2.0 1 1 1 2 2 2 0 Protein involved in formate dehydrogenase formation zf-C2HC_2 PF13913.1 gi|57641036|ref|YP_183514.1| - 9.8 5.9 9.6 3.3 7.4 2.1 2.3 2 0 0 2 2 2 0 zinc-finger of a C2HC-type PAC2 PF09754.4 gi|57641037|ref|YP_183515.1| - 3.5e-53 180.6 0.1 4.1e-53 180.4 0.1 1.0 1 0 0 1 1 1 1 PAC2 family IU_nuc_hydro PF01156.14 gi|57641037|ref|YP_183515.1| - 0.16 11.1 0.0 0.3 10.2 0.0 1.4 1 0 0 1 1 1 0 Inosine-uridine preferring nucleoside hydrolase CbiM PF01891.11 gi|57641038|ref|YP_183516.1| - 5.9e-62 208.9 22.3 6.5e-62 208.7 15.5 1.0 1 0 0 1 1 1 1 Cobalt uptake substrate-specific transmembrane region DUF165 PF02592.10 gi|57641038|ref|YP_183516.1| - 0.16 12.1 6.1 0.37 10.9 0.2 2.3 1 1 1 2 2 2 0 Uncharacterized ACR, YhhQ family COG1738 PDGLE PF13190.1 gi|57641039|ref|YP_183517.1| - 3.5e-09 36.1 2.9 1.8e-08 33.9 2.0 1.8 1 1 0 1 1 1 1 PDGLE domain FeoB_C PF07664.7 gi|57641039|ref|YP_183517.1| - 1.2 8.6 6.8 0.18 11.2 0.9 2.0 2 0 0 2 2 2 0 Ferrous iron transport protein B C terminus CbiQ PF02361.11 gi|57641040|ref|YP_183518.1| - 4.3e-23 82.0 9.9 5.5e-23 81.7 6.8 1.0 1 0 0 1 1 1 1 Cobalt transport protein ABC_tran PF00005.22 gi|57641041|ref|YP_183519.1| - 1.7e-28 99.6 0.0 3.1e-28 98.7 0.0 1.4 2 0 0 2 2 1 1 ABC transporter AAA_21 PF13304.1 gi|57641041|ref|YP_183519.1| - 1.8e-11 44.5 0.1 3.5e-09 37.0 0.1 2.1 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|57641041|ref|YP_183519.1| - 2.6e-05 23.5 0.1 0.00036 19.8 0.1 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|57641041|ref|YP_183519.1| - 0.00024 20.5 0.0 0.00052 19.4 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|57641041|ref|YP_183519.1| - 0.00055 19.1 0.0 0.022 13.8 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain NTPase_1 PF03266.10 gi|57641041|ref|YP_183519.1| - 0.0034 17.0 0.6 1.7 8.3 0.1 2.1 2 0 0 2 2 2 2 NTPase AAA_25 PF13481.1 gi|57641041|ref|YP_183519.1| - 0.029 13.7 0.0 0.26 10.6 0.0 2.0 2 0 0 2 2 2 0 AAA domain DUF258 PF03193.11 gi|57641041|ref|YP_183519.1| - 0.037 13.2 0.1 0.053 12.7 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_14 PF13173.1 gi|57641041|ref|YP_183519.1| - 0.039 13.8 0.1 5.4 6.9 0.0 2.5 2 0 0 2 2 2 0 AAA domain Arf PF00025.16 gi|57641041|ref|YP_183519.1| - 0.04 13.1 0.1 0.83 8.8 0.0 2.1 2 0 0 2 2 2 0 ADP-ribosylation factor family AAA_23 PF13476.1 gi|57641041|ref|YP_183519.1| - 0.053 13.8 0.1 0.09 13.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain ArgK PF03308.11 gi|57641041|ref|YP_183519.1| - 0.089 11.5 0.1 0.14 10.8 0.1 1.2 1 0 0 1 1 1 0 ArgK protein SbcCD_C PF13558.1 gi|57641041|ref|YP_183519.1| - 0.13 12.1 0.1 1.1 9.2 0.1 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit cobW PF02492.14 gi|57641041|ref|YP_183519.1| - 0.17 11.3 0.1 0.26 10.7 0.1 1.2 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain Arch_ATPase PF01637.13 gi|57641041|ref|YP_183519.1| - 0.22 11.1 1.2 4.8 6.8 0.8 2.1 1 1 0 1 1 1 0 Archaeal ATPase PGM_PMM_I PF02878.11 gi|57641043|ref|YP_183521.1| - 1.3e-47 160.7 0.0 3.4e-47 159.3 0.0 1.7 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.11 gi|57641043|ref|YP_183521.1| - 4.7e-29 100.7 0.1 1.3e-28 99.3 0.0 1.8 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.11 gi|57641043|ref|YP_183521.1| - 2.6e-26 91.8 0.0 5.2e-26 90.9 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.15 gi|57641043|ref|YP_183521.1| - 2.1e-13 50.0 0.7 9.2e-13 48.0 0.1 2.3 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain AP_endonuc_2 PF01261.19 gi|57641043|ref|YP_183521.1| - 0.0085 15.3 0.0 0.092 12.0 0.0 2.2 2 0 0 2 2 2 1 Xylose isomerase-like TIM barrel MannoseP_isomer PF01050.13 gi|57641044|ref|YP_183522.1| - 4.3e-65 217.9 0.3 7.2e-65 217.2 0.2 1.3 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase NTP_transferase PF00483.18 gi|57641044|ref|YP_183522.1| - 6.8e-59 199.1 0.0 9.2e-59 198.7 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase Cupin_2 PF07883.6 gi|57641044|ref|YP_183522.1| - 1.1e-12 47.2 0.1 3.5e-12 45.6 0.1 1.9 1 0 0 1 1 1 1 Cupin domain NTP_transf_3 PF12804.2 gi|57641044|ref|YP_183522.1| - 2.8e-07 30.7 0.0 5.4e-07 29.8 0.0 1.5 1 0 0 1 1 1 1 MobA-like NTP transferase domain Cupin_6 PF12852.2 gi|57641044|ref|YP_183522.1| - 0.00016 21.3 0.1 0.0025 17.4 0.0 2.1 1 1 1 2 2 2 1 Cupin AraC_binding PF02311.14 gi|57641044|ref|YP_183522.1| - 0.0039 16.8 0.0 0.0078 15.8 0.0 1.4 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_3 PF05899.7 gi|57641044|ref|YP_183522.1| - 0.0072 15.6 0.0 0.018 14.4 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF861) Cupin_1 PF00190.17 gi|57641044|ref|YP_183522.1| - 0.083 12.3 0.0 0.16 11.4 0.0 1.4 1 0 0 1 1 1 0 Cupin ADP_PFK_GK PF04587.10 gi|57641045|ref|YP_183523.1| - 8.8e-168 558.1 0.0 1e-167 557.9 0.0 1.0 1 0 0 1 1 1 1 ADP-specific Phosphofructokinase/Glucokinase conserved region GPI PF06560.6 gi|57641046|ref|YP_183524.1| - 1.3e-61 206.8 0.1 1.5e-61 206.5 0.1 1.0 1 0 0 1 1 1 1 Glucose-6-phosphate isomerase (GPI) Cupin_2 PF07883.6 gi|57641046|ref|YP_183524.1| - 9.6e-09 34.6 0.0 2.2e-08 33.4 0.0 1.6 1 0 0 1 1 1 1 Cupin domain Cupin_1 PF00190.17 gi|57641046|ref|YP_183524.1| - 0.0044 16.4 0.0 0.0065 15.9 0.0 1.2 1 0 0 1 1 1 1 Cupin DUF3368 PF11848.3 gi|57641046|ref|YP_183524.1| - 0.013 15.0 0.0 0.021 14.3 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3368) Cupin_3 PF05899.7 gi|57641046|ref|YP_183524.1| - 0.022 14.1 0.1 0.051 12.9 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF861) KH_2 PF07650.12 gi|57641047|ref|YP_183525.1| - 9.5e-06 25.0 1.8 1.1e-05 24.8 1.2 1.1 1 0 0 1 1 1 1 KH domain KH_1 PF00013.24 gi|57641047|ref|YP_183525.1| - 0.042 13.5 2.1 0.071 12.7 0.2 2.0 1 1 1 2 2 2 0 KH domain TraB PF01963.12 gi|57641048|ref|YP_183526.1| - 2.1e-32 112.5 0.4 8.4e-32 110.6 0.3 1.9 1 1 0 1 1 1 1 TraB family Lactamase_B_2 PF12706.2 gi|57641049|ref|YP_183527.1| - 6.3e-30 104.1 0.0 2e-29 102.5 0.0 1.8 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|57641049|ref|YP_183527.1| - 5.7e-16 58.7 0.2 9.9e-14 51.4 0.0 2.3 2 1 0 2 2 2 2 Metallo-beta-lactamase superfamily Lactamase_B_4 PF13691.1 gi|57641049|ref|YP_183527.1| - 1.2e-05 24.6 0.0 3.1e-05 23.3 0.0 1.6 2 0 0 2 2 2 1 tRNase Z endonuclease LEM PF03020.10 gi|57641049|ref|YP_183527.1| - 0.052 13.0 0.0 0.1 12.0 0.0 1.4 1 0 0 1 1 1 0 LEM domain RPN7 PF10602.4 gi|57641050|ref|YP_183528.1| - 1.3e-07 31.1 1.9 6.1e-07 28.9 0.2 2.3 1 1 1 2 2 2 1 26S proteasome subunit RPN7 TPR_12 PF13424.1 gi|57641050|ref|YP_183528.1| - 1.4e-07 31.3 13.1 4.8e-07 29.6 0.8 3.7 3 1 0 4 4 4 2 Tetratricopeptide repeat SNAP PF14938.1 gi|57641050|ref|YP_183528.1| - 8.2e-05 21.8 0.5 0.00023 20.4 0.4 1.8 1 0 0 1 1 1 1 Soluble NSF attachment protein, SNAP TPR_16 PF13432.1 gi|57641050|ref|YP_183528.1| - 0.00019 22.0 5.4 0.00033 21.2 0.4 3.1 4 0 0 4 4 2 1 Tetratricopeptide repeat TPR_2 PF07719.12 gi|57641050|ref|YP_183528.1| - 0.00025 20.7 15.3 0.0021 17.8 1.1 4.3 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_1 PF00515.23 gi|57641050|ref|YP_183528.1| - 0.00048 19.6 1.0 0.00048 19.6 0.7 4.3 5 0 0 5 5 4 1 Tetratricopeptide repeat TPR_11 PF13414.1 gi|57641050|ref|YP_183528.1| - 0.00049 19.6 2.7 0.00049 19.6 1.8 3.3 3 0 0 3 3 3 1 TPR repeat TPR_7 PF13176.1 gi|57641050|ref|YP_183528.1| - 0.0024 17.5 8.1 0.049 13.4 0.6 4.2 3 1 0 3 3 2 1 Tetratricopeptide repeat Apc3 PF12895.2 gi|57641050|ref|YP_183528.1| - 0.0034 17.4 2.0 0.0034 17.4 1.4 3.1 3 1 2 5 5 5 1 Anaphase-promoting complex, cyclosome, subunit 3 TPR_6 PF13174.1 gi|57641050|ref|YP_183528.1| - 0.005 17.2 6.7 1.3 9.6 0.2 4.1 4 0 0 4 4 2 2 Tetratricopeptide repeat TPR_14 PF13428.1 gi|57641050|ref|YP_183528.1| - 0.014 16.0 4.5 1.8 9.4 0.0 4.0 3 1 1 4 4 3 0 Tetratricopeptide repeat TPR_20 PF14561.1 gi|57641050|ref|YP_183528.1| - 0.017 15.2 2.4 0.064 13.3 0.0 3.0 3 2 1 4 4 4 0 Tetratricopeptide repeat PmbA_TldD PF01523.11 gi|57641050|ref|YP_183528.1| - 0.047 12.9 0.1 0.12 11.6 0.0 1.7 1 1 0 1 1 1 0 Putative modulator of DNA gyrase TPR_17 PF13431.1 gi|57641050|ref|YP_183528.1| - 0.092 12.9 0.2 42 4.6 0.0 3.8 3 0 0 3 3 3 0 Tetratricopeptide repeat TPR_10 PF13374.1 gi|57641050|ref|YP_183528.1| - 0.13 12.2 2.8 2 8.4 0.2 3.2 2 0 0 2 2 2 0 Tetratricopeptide repeat DeoC PF01791.4 gi|57641050|ref|YP_183528.1| - 0.13 11.4 0.2 0.33 10.2 0.1 1.6 1 0 0 1 1 1 0 DeoC/LacD family aldolase BRICHOS PF04089.9 gi|57641050|ref|YP_183528.1| - 0.14 12.0 1.8 0.66 9.8 0.2 2.4 2 0 0 2 2 2 0 BRICHOS domain TPR_8 PF13181.1 gi|57641050|ref|YP_183528.1| - 0.2 11.5 17.7 0.065 13.0 1.9 4.7 4 0 0 4 4 4 0 Tetratricopeptide repeat Foie-gras_1 PF11817.3 gi|57641050|ref|YP_183528.1| - 0.27 10.6 4.5 3.6 6.9 0.1 2.2 1 1 1 2 2 2 0 Foie gras liver health family 1 TPR_19 PF14559.1 gi|57641050|ref|YP_183528.1| - 0.55 10.6 7.8 2.6 8.4 0.4 3.7 3 1 1 4 4 3 0 Tetratricopeptide repeat AAA_23 PF13476.1 gi|57641050|ref|YP_183528.1| - 1 9.6 7.6 4.7 7.4 5.3 2.3 1 1 0 1 1 1 0 AAA domain ArsC PF03960.10 gi|57641050|ref|YP_183528.1| - 1 9.4 4.2 56 3.8 0.1 3.3 3 0 0 3 3 3 0 ArsC family PIN_2 PF10130.4 gi|57641050|ref|YP_183528.1| - 8.3 6.4 7.8 9.4 6.2 0.1 3.4 4 0 0 4 4 4 0 PIN domain tRNA_U5-meth_tr PF05958.6 gi|57641051|ref|YP_183529.1| - 9.5e-21 73.8 0.1 2.1e-13 49.7 0.0 2.2 1 1 1 2 2 2 2 tRNA (Uracil-5-)-methyltransferase Methyltransf_26 PF13659.1 gi|57641051|ref|YP_183529.1| - 2.7e-10 40.3 0.0 4.8e-10 39.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|57641051|ref|YP_183529.1| - 5.4e-10 38.9 0.0 8.4e-10 38.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Met_10 PF02475.11 gi|57641051|ref|YP_183529.1| - 2e-09 37.3 0.2 6.6e-09 35.6 0.1 1.8 1 1 1 2 2 2 1 Met-10+ like-protein Methyltransf_31 PF13847.1 gi|57641051|ref|YP_183529.1| - 4e-08 32.9 0.0 8.3e-08 31.9 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|57641051|ref|YP_183529.1| - 3.6e-07 30.7 0.0 7.1e-07 29.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|57641051|ref|YP_183529.1| - 1.3e-05 24.4 0.0 1.8e-05 24.0 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_15 PF09445.5 gi|57641051|ref|YP_183529.1| - 0.0015 18.0 0.0 0.0029 17.1 0.0 1.6 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Cons_hypoth95 PF03602.10 gi|57641051|ref|YP_183529.1| - 0.0067 15.8 0.0 0.011 15.1 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_23 PF13489.1 gi|57641051|ref|YP_183529.1| - 0.0089 15.7 0.0 0.02 14.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|57641051|ref|YP_183529.1| - 0.057 12.9 0.0 0.094 12.2 0.0 1.2 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 TehB PF03848.9 gi|57641051|ref|YP_183529.1| - 0.064 12.4 0.0 0.12 11.5 0.0 1.4 1 0 0 1 1 1 0 Tellurite resistance protein TehB PIN PF01850.16 gi|57641053|ref|YP_183531.1| - 1.6e-20 73.6 0.3 2e-20 73.3 0.2 1.1 1 0 0 1 1 1 1 PIN domain PIN_3 PF13470.1 gi|57641053|ref|YP_183531.1| - 0.00036 21.1 0.0 0.00046 20.8 0.0 1.1 1 0 0 1 1 1 1 PIN domain PTPS PF01242.14 gi|57641054|ref|YP_183532.1| - 6.6e-32 109.7 0.0 8.1e-32 109.5 0.0 1.0 1 0 0 1 1 1 1 6-pyruvoyl tetrahydropterin synthase DUF192 PF02643.10 gi|57641055|ref|YP_183533.1| - 3.5e-19 68.4 0.0 4.4e-19 68.1 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized ACR, COG1430 Prefoldin PF02996.12 gi|57641056|ref|YP_183534.1| - 1.8e-22 79.2 1.8 1.9e-22 79.1 0.2 1.7 1 1 1 2 2 2 1 Prefoldin subunit Prefoldin_2 PF01920.15 gi|57641056|ref|YP_183534.1| - 0.00077 19.2 4.8 0.017 14.9 0.5 2.2 2 0 0 2 2 2 2 Prefoldin subunit Poly_export PF02563.11 gi|57641056|ref|YP_183534.1| - 0.038 13.7 0.1 6.2 6.6 0.0 2.4 2 0 0 2 2 2 0 Polysaccharide biosynthesis/export protein DUF2017 PF09438.5 gi|57641056|ref|YP_183534.1| - 0.038 13.5 0.6 0.27 10.7 0.1 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF2017) FerA PF08165.6 gi|57641056|ref|YP_183534.1| - 0.042 13.5 1.1 0.35 10.5 0.0 2.4 2 0 0 2 2 2 0 FerA (NUC095) domain IncA PF04156.9 gi|57641056|ref|YP_183534.1| - 0.1 12.1 3.2 0.22 11.1 0.3 2.0 2 0 0 2 2 2 0 IncA protein COG2 PF06148.6 gi|57641056|ref|YP_183534.1| - 0.21 11.4 2.6 5.6 6.8 0.4 2.3 2 1 0 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 DUF1664 PF07889.7 gi|57641056|ref|YP_183534.1| - 0.22 11.2 2.4 7.3 6.4 0.2 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) DUF4349 PF14257.1 gi|57641056|ref|YP_183534.1| - 0.25 10.5 0.0 0.25 10.5 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4349) BLOC1_2 PF10046.4 gi|57641056|ref|YP_183534.1| - 0.47 10.6 4.4 0.94 9.6 0.2 2.3 2 1 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 HR1 PF02185.11 gi|57641056|ref|YP_183534.1| - 2 8.1 9.3 3.4 7.4 0.1 2.8 3 1 0 3 3 3 0 Hr1 repeat Prefoldin_2 PF01920.15 gi|57641057|ref|YP_183535.1| - 1.8e-11 43.7 8.5 2e-11 43.5 5.9 1.0 1 0 0 1 1 1 1 Prefoldin subunit DUF1843 PF08898.5 gi|57641057|ref|YP_183535.1| - 0.2 11.7 1.8 10 6.2 0.0 2.9 2 1 1 3 3 3 0 Domain of unknown function (DUF1843) TPR_MLP1_2 PF07926.7 gi|57641057|ref|YP_183535.1| - 0.41 10.3 5.7 0.65 9.7 3.9 1.3 1 1 0 1 1 1 0 TPR/MLP1/MLP2-like protein DUF342 PF03961.8 gi|57641057|ref|YP_183535.1| - 0.71 8.2 6.2 0.91 7.8 4.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF342) APG6 PF04111.7 gi|57641057|ref|YP_183535.1| - 1.3 8.0 6.8 3.5 6.5 4.7 1.7 1 1 1 2 2 2 0 Autophagy protein Apg6 Prefoldin PF02996.12 gi|57641057|ref|YP_183535.1| - 2.6 7.7 9.5 1 9.0 2.7 2.5 2 1 0 2 2 2 0 Prefoldin subunit POR PF01558.13 gi|57641058|ref|YP_183536.1| - 5.7e-35 120.7 0.0 6.7e-35 120.5 0.0 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_C PF02775.16 gi|57641059|ref|YP_183537.1| - 8.4e-36 122.8 0.2 1.2e-35 122.3 0.1 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain XFP_N PF09364.5 gi|57641059|ref|YP_183537.1| - 0.072 11.6 0.1 0.11 11.0 0.0 1.2 1 0 0 1 1 1 0 XFP N-terminal domain POR_N PF01855.14 gi|57641060|ref|YP_183538.1| - 1.8e-80 269.7 0.1 2.2e-80 269.4 0.1 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Transketolase_C PF02780.15 gi|57641060|ref|YP_183538.1| - 6.2e-11 42.3 0.0 1.2e-10 41.3 0.0 1.5 1 0 0 1 1 1 1 Transketolase, C-terminal domain TPP_enzyme_N PF02776.13 gi|57641060|ref|YP_183538.1| - 1.5e-05 24.5 0.7 2.3e-05 23.9 0.5 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DUF1093 PF06486.6 gi|57641060|ref|YP_183538.1| - 0.1 12.9 0.0 0.19 12.1 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1093) POR PF01558.13 gi|57641061|ref|YP_183539.1| - 9e-40 136.3 0.3 1.1e-39 136.1 0.2 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Nramp PF01566.13 gi|57641061|ref|YP_183539.1| - 0.095 11.4 0.0 0.15 10.8 0.0 1.2 1 0 0 1 1 1 0 Natural resistance-associated macrophage protein HEPN PF05168.9 gi|57641062|ref|YP_183540.1| - 3e-27 94.8 1.8 3.5e-27 94.6 1.2 1.0 1 0 0 1 1 1 1 HEPN domain NTP_transf_2 PF01909.18 gi|57641063|ref|YP_183541.1| - 2.3e-11 43.8 0.3 2.5e-11 43.7 0.2 1.1 1 0 0 1 1 1 1 Nucleotidyltransferase domain DUF294 PF03445.8 gi|57641063|ref|YP_183541.1| - 0.0039 16.7 0.0 0.0048 16.5 0.0 1.1 1 0 0 1 1 1 1 Putative nucleotidyltransferase DUF294 TPP_enzyme_C PF02775.16 gi|57641064|ref|YP_183542.1| - 1.9e-40 137.9 0.4 2.8e-40 137.3 0.3 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.14 gi|57641065|ref|YP_183543.1| - 2.8e-76 256.0 0.0 3.5e-76 255.7 0.0 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Transketolase_C PF02780.15 gi|57641065|ref|YP_183543.1| - 2.5e-06 27.4 0.0 5.8e-06 26.2 0.0 1.5 1 0 0 1 1 1 1 Transketolase, C-terminal domain TPP_enzyme_N PF02776.13 gi|57641065|ref|YP_183543.1| - 8.4e-05 22.1 0.1 0.00014 21.4 0.1 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Fer4 PF00037.22 gi|57641066|ref|YP_183544.1| - 2.9e-12 45.6 13.4 1.6e-06 27.4 2.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|57641066|ref|YP_183544.1| - 1.5e-11 44.4 7.5 2.1e-11 43.9 5.2 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|57641066|ref|YP_183544.1| - 5.3e-08 32.3 12.9 0.00012 21.7 1.9 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|57641066|ref|YP_183544.1| - 6.3e-08 32.3 21.2 2.4e-06 27.2 7.5 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|57641066|ref|YP_183544.1| - 1e-07 32.1 9.2 2.1e-07 31.0 6.5 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|57641066|ref|YP_183544.1| - 4.5e-07 29.6 11.9 2.7e-05 23.9 8.7 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|57641066|ref|YP_183544.1| - 1.6e-06 28.4 5.3 0.02 15.2 0.1 2.2 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_15 PF13459.1 gi|57641066|ref|YP_183544.1| - 2.2e-06 28.1 7.7 0.00041 20.8 0.4 2.2 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|57641066|ref|YP_183544.1| - 2.1e-05 24.8 5.0 0.0067 16.8 0.3 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|57641066|ref|YP_183544.1| - 5.9e-05 23.0 9.5 0.02 14.9 0.8 2.0 1 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|57641066|ref|YP_183544.1| - 0.00011 22.5 11.7 0.0031 17.8 8.2 2.1 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|57641066|ref|YP_183544.1| - 0.00012 22.7 10.2 0.02 15.5 1.7 2.2 1 1 2 3 3 3 3 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|57641066|ref|YP_183544.1| - 0.00028 20.9 10.8 0.048 14.0 1.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|57641066|ref|YP_183544.1| - 0.0011 18.7 16.3 0.037 13.9 1.4 2.5 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_3 PF12798.2 gi|57641066|ref|YP_183544.1| - 0.0027 18.1 15.8 0.02 15.4 3.7 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_11 PF13247.1 gi|57641066|ref|YP_183544.1| - 0.019 14.8 4.3 0.16 11.8 2.0 2.0 1 1 1 2 2 2 0 4Fe-4S dicluster domain DUF4231 PF14015.1 gi|57641067|ref|YP_183545.1| - 2.2 8.2 6.2 1.5 8.8 1.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF4231) DUF4488 PF14869.1 gi|57641068|ref|YP_183546.1| - 0.052 13.1 0.1 0.08 12.5 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4488) Radical_SAM PF04055.16 gi|57641070|ref|YP_183548.1| - 7.3e-09 36.0 0.0 1.1e-08 35.4 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily FUN14 PF04930.10 gi|57641071|ref|YP_183549.1| - 0.011 16.0 0.3 0.049 13.9 0.1 2.1 1 1 1 2 2 2 0 FUN14 family SurE PF01975.12 gi|57641072|ref|YP_183550.1| - 3.3e-56 189.7 0.0 4e-56 189.4 0.0 1.1 1 0 0 1 1 1 1 Survival protein SurE PsiE PF06146.7 gi|57641073|ref|YP_183551.1| - 1.7e-14 53.8 6.5 1.7e-14 53.8 4.5 1.7 2 0 0 2 2 2 1 Phosphate-starvation-inducible E Cytochrom_B_N PF00033.14 gi|57641073|ref|YP_183551.1| - 0.002 17.5 2.1 0.0035 16.7 0.3 1.9 2 0 0 2 2 2 1 Cytochrome b(N-terminal)/b6/petB DUF2208 PF09973.4 gi|57641073|ref|YP_183551.1| - 0.0093 15.2 3.4 0.012 14.8 2.4 1.2 1 0 0 1 1 1 1 Predicted membrane protein (DUF2208) DUF4328 PF14219.1 gi|57641073|ref|YP_183551.1| - 0.13 11.5 1.8 4.9 6.4 0.2 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4328) FixQ PF05545.6 gi|57641073|ref|YP_183551.1| - 0.98 9.1 0.0 0.98 9.1 0.0 2.4 2 0 0 2 2 2 0 Cbb3-type cytochrome oxidase component FixQ MatE PF01554.13 gi|57641073|ref|YP_183551.1| - 1.3 8.5 6.4 0.34 10.5 2.1 1.7 1 1 1 2 2 2 0 MatE DUF1230 PF06799.6 gi|57641073|ref|YP_183551.1| - 8.8 6.1 7.3 3.3 7.5 0.6 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1230) AAA PF00004.24 gi|57641074|ref|YP_183552.1| - 4.9e-38 130.3 0.0 1e-37 129.2 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|57641074|ref|YP_183552.1| - 3.5e-05 23.8 0.6 0.00023 21.1 0.4 2.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|57641074|ref|YP_183552.1| - 5.1e-05 23.4 0.1 0.018 15.1 0.1 2.5 1 1 0 1 1 1 1 AAA domain RuvB_N PF05496.7 gi|57641074|ref|YP_183552.1| - 0.00013 21.1 0.0 0.00022 20.3 0.0 1.5 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus DUF815 PF05673.8 gi|57641074|ref|YP_183552.1| - 0.00031 19.7 0.0 0.00065 18.7 0.0 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF815) AAA_5 PF07728.9 gi|57641074|ref|YP_183552.1| - 0.00032 20.4 0.3 0.0027 17.4 0.2 2.2 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_17 PF13207.1 gi|57641074|ref|YP_183552.1| - 0.00038 21.2 0.0 0.0011 19.8 0.0 1.9 1 1 0 1 1 1 1 AAA domain Bac_DnaA PF00308.13 gi|57641074|ref|YP_183552.1| - 0.00053 19.6 0.0 0.001 18.8 0.0 1.4 1 1 0 1 1 1 1 Bacterial dnaA protein Vps4_C PF09336.5 gi|57641074|ref|YP_183552.1| - 0.0007 19.4 0.0 0.0026 17.6 0.0 2.0 2 0 0 2 2 2 1 Vps4 C terminal oligomerisation domain AAA_33 PF13671.1 gi|57641074|ref|YP_183552.1| - 0.0016 18.3 0.0 0.0035 17.2 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_2 PF07724.9 gi|57641074|ref|YP_183552.1| - 0.0025 17.7 0.0 0.0039 17.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) TIP49 PF06068.8 gi|57641074|ref|YP_183552.1| - 0.0029 16.3 0.0 0.0052 15.5 0.0 1.3 1 0 0 1 1 1 1 TIP49 C-terminus IstB_IS21 PF01695.12 gi|57641074|ref|YP_183552.1| - 0.0036 16.7 0.0 0.006 16.0 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein Mg_chelatase PF01078.16 gi|57641074|ref|YP_183552.1| - 0.006 15.7 0.1 0.014 14.5 0.0 1.6 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI RNA_helicase PF00910.17 gi|57641074|ref|YP_183552.1| - 0.0087 16.2 0.0 0.02 15.0 0.0 1.7 1 0 0 1 1 1 1 RNA helicase AAA_25 PF13481.1 gi|57641074|ref|YP_183552.1| - 0.01 15.2 1.0 0.053 12.9 0.3 2.2 1 1 1 2 2 2 0 AAA domain AAA_19 PF13245.1 gi|57641074|ref|YP_183552.1| - 0.013 15.2 0.1 0.038 13.7 0.0 1.8 2 0 0 2 2 1 0 Part of AAA domain AAA_14 PF13173.1 gi|57641074|ref|YP_183552.1| - 0.017 15.0 0.0 0.032 14.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|57641074|ref|YP_183552.1| - 0.027 14.7 0.0 0.058 13.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain DUF2075 PF09848.4 gi|57641074|ref|YP_183552.1| - 0.039 12.9 0.0 0.077 11.9 0.0 1.5 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) KaiC PF06745.8 gi|57641074|ref|YP_183552.1| - 0.047 12.7 0.2 3.8 6.5 0.0 2.4 2 1 0 2 2 2 0 KaiC Zeta_toxin PF06414.7 gi|57641074|ref|YP_183552.1| - 0.11 11.5 0.0 0.22 10.6 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin tRNA-synt_2b PF00587.20 gi|57641075|ref|YP_183553.1| - 5.6e-39 133.4 0.0 1.6e-38 131.9 0.0 1.8 2 0 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) Seryl_tRNA_N PF02403.17 gi|57641075|ref|YP_183553.1| - 6.6e-30 103.3 12.5 1.1e-29 102.5 8.7 1.4 1 0 0 1 1 1 1 Seryl-tRNA synthetase N-terminal domain GAS PF13851.1 gi|57641075|ref|YP_183553.1| - 0.0085 15.3 8.2 0.017 14.3 5.7 1.4 1 0 0 1 1 1 1 Growth-arrest specific micro-tubule binding IBB PF01749.15 gi|57641075|ref|YP_183553.1| - 0.058 13.5 2.3 0.13 12.3 1.6 1.5 1 0 0 1 1 1 0 Importin beta binding domain Transposase_22 PF02994.9 gi|57641075|ref|YP_183553.1| - 0.1 11.1 7.9 0.16 10.4 5.5 1.2 1 0 0 1 1 1 0 L1 transposable element Phage_GP20 PF06810.6 gi|57641075|ref|YP_183553.1| - 0.11 11.9 8.4 0.17 11.2 5.9 1.2 1 0 0 1 1 1 0 Phage minor structural protein GP20 DUF342 PF03961.8 gi|57641075|ref|YP_183553.1| - 0.13 10.6 4.1 0.19 10.1 2.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF342) Syntaxin_2 PF14523.1 gi|57641075|ref|YP_183553.1| - 0.13 12.2 3.9 0.26 11.3 2.7 1.4 1 0 0 1 1 1 0 Syntaxin-like protein APG6 PF04111.7 gi|57641075|ref|YP_183553.1| - 0.14 11.1 7.0 0.29 10.1 4.3 1.8 2 0 0 2 2 2 0 Autophagy protein Apg6 Laminin_II PF06009.7 gi|57641075|ref|YP_183553.1| - 0.21 11.3 4.3 0.36 10.5 3.0 1.3 1 0 0 1 1 1 0 Laminin Domain II RRP7 PF12923.2 gi|57641075|ref|YP_183553.1| - 0.32 11.0 5.8 1.5 8.8 1.9 2.3 2 0 0 2 2 2 0 Ribosomal RNA-processing protein 7 (RRP7) DUF4509 PF14970.1 gi|57641075|ref|YP_183553.1| - 1.4 8.5 6.3 15 5.2 1.1 2.9 2 1 1 3 3 3 0 Domain of unknown function (DUF4509) NYD-SP28_assoc PF14775.1 gi|57641075|ref|YP_183553.1| - 1.5 8.5 7.7 0.066 12.9 0.9 2.1 2 0 0 2 2 2 0 Sperm tail C-terminal domain Prefoldin PF02996.12 gi|57641075|ref|YP_183553.1| - 2.2 7.9 8.3 0.54 9.9 2.1 2.1 1 1 1 2 2 2 0 Prefoldin subunit Uds1 PF15456.1 gi|57641075|ref|YP_183553.1| - 3.5 7.6 6.6 4 7.4 3.4 1.8 2 0 0 2 2 2 0 Up-regulated During Septation IncA PF04156.9 gi|57641075|ref|YP_183553.1| - 4.2 6.9 6.1 6.9 6.2 4.2 1.2 1 0 0 1 1 1 0 IncA protein bZIP_2 PF07716.10 gi|57641075|ref|YP_183553.1| - 5.2 6.9 10.4 1.2 9.0 1.3 2.5 2 0 0 2 2 2 0 Basic region leucine zipper bZIP_1 PF00170.16 gi|57641075|ref|YP_183553.1| - 5.9 6.9 9.9 12 5.9 6.2 1.9 1 1 1 2 2 2 0 bZIP transcription factor HhH-GPD PF00730.20 gi|57641076|ref|YP_183554.1| - 3.2e-20 72.4 0.0 4.9e-20 71.8 0.0 1.3 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.18 gi|57641076|ref|YP_183554.1| - 3.8e-07 29.4 0.1 1.9e-06 27.2 0.0 2.1 2 0 0 2 2 2 1 Helix-hairpin-helix motif EndIII_4Fe-2S PF10576.4 gi|57641076|ref|YP_183554.1| - 0.00013 22.0 6.9 0.00013 22.0 4.8 1.7 2 0 0 2 2 2 1 Iron-sulfur binding domain of endonuclease III HHH_2 PF12826.2 gi|57641076|ref|YP_183554.1| - 0.0091 15.8 0.0 1.2 9.0 0.0 2.4 2 0 0 2 2 2 1 Helix-hairpin-helix motif DUF2400 PF09674.5 gi|57641076|ref|YP_183554.1| - 0.046 13.4 0.0 0.1 12.2 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2400) GAD-like PF08887.6 gi|57641076|ref|YP_183554.1| - 0.069 13.2 0.1 7.2 6.7 0.0 2.5 1 1 1 2 2 2 0 GAD-like domain Scm3 PF10384.4 gi|57641076|ref|YP_183554.1| - 0.11 12.0 0.1 0.28 10.6 0.1 1.7 1 0 0 1 1 1 0 Centromere protein Scm3 DUF384 PF04064.8 gi|57641076|ref|YP_183554.1| - 0.2 11.2 1.5 16 5.1 0.0 2.8 2 1 0 2 2 2 0 Domain of unknown function (DUF384) HHH_5 PF14520.1 gi|57641076|ref|YP_183554.1| - 0.23 11.6 2.0 1.3 9.2 0.0 2.7 2 1 1 3 3 3 0 Helix-hairpin-helix domain CDC48_2 PF02933.12 gi|57641077|ref|YP_183555.1| - 2.5e-07 30.2 0.8 6.2e-07 28.9 0.0 2.0 2 1 0 2 2 2 1 Cell division protein 48 (CDC48), domain 2 DUF2807 PF10988.3 gi|57641077|ref|YP_183555.1| - 0.029 13.9 0.9 0.035 13.6 0.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2807) DUF2375 PF09558.5 gi|57641077|ref|YP_183555.1| - 0.093 12.5 0.8 0.14 12.0 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2375) CPSF_A PF03178.10 gi|57641077|ref|YP_183555.1| - 0.12 11.4 0.1 0.22 10.5 0.0 1.6 1 1 1 2 2 2 0 CPSF A subunit region eIF2A PF08662.6 gi|57641077|ref|YP_183555.1| - 0.12 12.0 0.0 0.15 11.7 0.0 1.2 1 0 0 1 1 1 0 Eukaryotic translation initiation factor eIF2A Metallophos PF00149.23 gi|57641077|ref|YP_183555.1| - 0.15 11.4 0.0 0.15 11.4 0.0 1.1 1 0 0 1 1 1 0 Calcineurin-like phosphoesterase PadR PF03551.9 gi|57641078|ref|YP_183556.1| - 5.5e-19 67.7 0.5 1.4e-18 66.3 0.4 1.7 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_27 PF13463.1 gi|57641078|ref|YP_183556.1| - 0.00018 21.7 0.0 0.00035 20.8 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_45 PF14947.1 gi|57641078|ref|YP_183556.1| - 0.0002 21.0 0.1 0.0004 20.1 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_34 PF13601.1 gi|57641078|ref|YP_183556.1| - 0.00048 20.1 0.0 0.001 19.0 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain Mrr_N PF14338.1 gi|57641078|ref|YP_183556.1| - 0.0013 18.7 0.6 0.014 15.4 0.1 2.3 2 0 0 2 2 2 1 Mrr N-terminal domain DUF4364 PF14277.1 gi|57641078|ref|YP_183556.1| - 0.002 17.7 0.1 0.0031 17.1 0.1 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF4364) TrmB PF01978.14 gi|57641078|ref|YP_183556.1| - 0.0081 15.8 0.0 0.021 14.5 0.0 1.7 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB AphA_like PF14557.1 gi|57641078|ref|YP_183556.1| - 0.014 14.9 0.1 0.043 13.3 0.0 1.8 1 1 0 1 1 1 0 Putative AphA-like transcriptional regulator DUF3106 PF11304.3 gi|57641078|ref|YP_183556.1| - 0.17 12.3 0.5 0.29 11.5 0.4 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3106) ABC_tran PF00005.22 gi|57641079|ref|YP_183557.1| - 3e-35 121.4 0.0 4.3e-35 120.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|57641079|ref|YP_183557.1| - 2.3e-14 54.0 0.1 2.1e-10 41.0 0.1 2.1 1 1 1 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|57641079|ref|YP_183557.1| - 2.1e-05 23.9 0.1 3.9e-05 23.0 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|57641079|ref|YP_183557.1| - 0.00052 20.4 0.3 0.00067 20.0 0.2 1.5 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|57641079|ref|YP_183557.1| - 0.0013 17.9 0.1 0.0056 15.7 0.1 1.8 2 0 0 2 2 2 1 AAA ATPase domain DUF4162 PF13732.1 gi|57641079|ref|YP_183557.1| - 0.0013 19.2 0.0 0.0024 18.3 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA PF00004.24 gi|57641079|ref|YP_183557.1| - 0.0052 16.9 0.1 0.053 13.7 0.0 2.5 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) SRP54 PF00448.17 gi|57641079|ref|YP_183557.1| - 0.011 15.2 0.0 0.017 14.5 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_16 PF13191.1 gi|57641079|ref|YP_183557.1| - 0.025 14.5 0.0 0.056 13.4 0.0 1.6 2 0 0 2 2 2 0 AAA ATPase domain SMC_N PF02463.14 gi|57641079|ref|YP_183557.1| - 0.044 13.0 0.0 0.25 10.5 0.0 1.9 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain AAA_28 PF13521.1 gi|57641079|ref|YP_183557.1| - 0.089 12.7 0.1 0.24 11.3 0.0 1.7 1 0 0 1 1 1 0 AAA domain SbcCD_C PF13558.1 gi|57641079|ref|YP_183557.1| - 0.098 12.5 0.0 0.27 11.1 0.0 1.8 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_30 PF13604.1 gi|57641079|ref|YP_183557.1| - 0.11 12.0 0.2 0.25 10.8 0.0 1.6 2 0 0 2 2 2 0 AAA domain ABC2_membrane PF01061.19 gi|57641080|ref|YP_183558.1| - 1.7e-42 144.9 17.2 1.7e-42 144.9 11.9 1.5 1 1 1 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|57641080|ref|YP_183558.1| - 4.1e-20 72.0 20.6 4.1e-20 72.0 14.2 1.6 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|57641080|ref|YP_183558.1| - 0.0018 17.2 16.6 0.0018 17.2 11.5 2.0 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|57641080|ref|YP_183558.1| - 0.032 13.4 20.0 0.045 12.8 13.9 1.2 1 0 0 1 1 1 0 ABC-2 family transporter protein PGK PF00162.14 gi|57641081|ref|YP_183559.1| - 1.2e-112 376.3 0.0 1.3e-112 376.1 0.0 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase Mrr_cat PF04471.7 gi|57641082|ref|YP_183560.1| - 2.1e-13 50.0 0.0 5.9e-13 48.6 0.0 1.8 1 0 0 1 1 1 1 Restriction endonuclease DUF2874 PF11396.3 gi|57641082|ref|YP_183560.1| - 1.5e-05 24.8 7.5 0.0011 18.9 0.3 3.8 3 0 0 3 3 3 2 Protein of unknown function (DUF2874) MerR_1 PF13411.1 gi|57641082|ref|YP_183560.1| - 0.027 14.2 0.6 1.5 8.6 0.1 2.6 2 0 0 2 2 2 0 MerR HTH family regulatory protein PepSY PF03413.14 gi|57641082|ref|YP_183560.1| - 5.2 7.7 20.0 2.2 8.9 0.0 6.2 6 2 0 6 6 6 0 Peptidase propeptide and YPEB domain LeuA_dimer PF08502.5 gi|57641083|ref|YP_183561.1| - 0.021 14.6 0.1 0.13 12.0 0.0 2.1 1 1 0 2 2 2 0 LeuA allosteric (dimerisation) domain PAPS_reduct PF01507.14 gi|57641083|ref|YP_183561.1| - 0.022 14.5 0.3 0.037 13.8 0.1 1.5 2 0 0 2 2 2 0 Phosphoadenosine phosphosulfate reductase family Vac_Fusion PF02346.11 gi|57641083|ref|YP_183561.1| - 0.034 13.5 1.5 0.039 13.3 0.1 1.8 2 0 0 2 2 2 0 Chordopoxvirus fusion protein MM_CoA_mutase PF01642.17 gi|57641084|ref|YP_183562.1| - 2.5e-225 748.5 0.0 2.9e-225 748.2 0.0 1.0 1 0 0 1 1 1 1 Methylmalonyl-CoA mutase RE_AccI PF09545.5 gi|57641084|ref|YP_183562.1| - 0.015 13.8 0.0 0.024 13.2 0.0 1.2 1 0 0 1 1 1 0 AccI restriction endonuclease ABC2_membrane_2 PF12679.2 gi|57641086|ref|YP_183564.1| - 6.6e-18 64.5 19.4 1.1e-17 63.8 13.4 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|57641086|ref|YP_183564.1| - 1.5e-17 63.5 19.8 4.5e-17 61.9 13.9 1.6 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|57641086|ref|YP_183564.1| - 0.00057 19.2 15.9 0.0046 16.2 9.7 2.7 2 1 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|57641086|ref|YP_183564.1| - 0.0011 18.1 22.2 0.0011 18.1 15.4 1.8 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC_tran PF00005.22 gi|57641087|ref|YP_183565.1| - 2.7e-28 98.9 0.0 3.9e-28 98.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|57641087|ref|YP_183565.1| - 1.4e-13 51.4 0.0 1.2e-07 32.0 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|57641087|ref|YP_183565.1| - 9.5e-06 24.9 0.0 0.00069 18.7 0.0 2.1 1 1 1 2 2 2 1 AAA ATPase domain AAA_23 PF13476.1 gi|57641087|ref|YP_183565.1| - 0.0014 19.0 0.0 0.0019 18.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|57641087|ref|YP_183565.1| - 0.021 14.0 0.1 0.97 8.6 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|57641087|ref|YP_183565.1| - 0.064 12.7 0.0 0.14 11.6 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain SbcCD_C PF13558.1 gi|57641087|ref|YP_183565.1| - 0.068 13.0 0.1 0.23 11.4 0.0 1.9 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA PF00004.24 gi|57641087|ref|YP_183565.1| - 0.069 13.3 0.2 0.16 12.1 0.1 1.8 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) SRP54 PF00448.17 gi|57641087|ref|YP_183565.1| - 0.076 12.4 0.6 0.29 10.5 0.2 1.9 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_30 PF13604.1 gi|57641087|ref|YP_183565.1| - 0.14 11.6 0.0 0.4 10.2 0.0 1.9 1 1 0 1 1 1 0 AAA domain Lactamase_B_2 PF12706.2 gi|57641088|ref|YP_183566.1| - 9.3e-11 41.6 0.0 8.5e-10 38.4 0.0 2.1 2 0 0 2 2 2 1 Beta-lactamase superfamily domain RMMBL PF07521.7 gi|57641088|ref|YP_183566.1| - 0.00071 19.3 0.0 0.0017 18.1 0.0 1.6 1 0 0 1 1 1 1 RNA-metabolising metallo-beta-lactamase Lactamase_B PF00753.22 gi|57641088|ref|YP_183566.1| - 0.063 12.9 2.1 0.16 11.5 1.5 1.9 1 1 0 1 1 1 0 Metallo-beta-lactamase superfamily HSP20 PF00011.16 gi|57641090|ref|YP_183568.1| - 6.1e-21 74.1 0.8 7.7e-21 73.8 0.6 1.1 1 0 0 1 1 1 1 Hsp20/alpha crystallin family PIH1 PF08190.7 gi|57641090|ref|YP_183568.1| - 3e-05 23.6 0.0 3.5e-05 23.3 0.0 1.1 1 0 0 1 1 1 1 pre-RNA processing PIH1/Nop17 CS PF04969.11 gi|57641090|ref|YP_183568.1| - 0.029 14.9 0.0 0.086 13.4 0.0 1.8 1 1 0 1 1 1 0 CS domain AAA PF00004.24 gi|57641092|ref|YP_183570.1| - 8e-105 346.4 0.2 5.6e-52 175.4 0.0 3.0 3 0 0 3 3 3 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.13 gi|57641092|ref|YP_183570.1| - 3.9e-36 122.8 1.2 3.4e-35 119.8 0.5 2.9 4 0 0 4 4 1 1 Cell division protein 48 (CDC48), N-terminal domain AAA_16 PF13191.1 gi|57641092|ref|YP_183570.1| - 3e-18 66.4 0.4 4.7e-08 33.2 0.0 3.8 3 1 0 3 3 3 2 AAA ATPase domain AAA_2 PF07724.9 gi|57641092|ref|YP_183570.1| - 6.5e-18 65.2 0.0 2.7e-09 37.1 0.0 2.8 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_22 PF13401.1 gi|57641092|ref|YP_183570.1| - 2.6e-17 63.2 6.1 7.4e-06 26.1 0.0 5.6 4 2 0 4 4 3 2 AAA domain RuvB_N PF05496.7 gi|57641092|ref|YP_183570.1| - 3.7e-17 62.1 0.7 8.4e-08 31.5 0.0 3.3 3 0 0 3 3 3 2 Holliday junction DNA helicase ruvB N-terminus CDC48_2 PF02933.12 gi|57641092|ref|YP_183570.1| - 4.3e-15 55.1 0.2 1.5e-14 53.3 0.1 2.0 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), domain 2 AAA_14 PF13173.1 gi|57641092|ref|YP_183570.1| - 2.9e-14 53.0 0.0 2.6e-06 27.3 0.0 3.0 3 0 0 3 3 3 2 AAA domain AAA_5 PF07728.9 gi|57641092|ref|YP_183570.1| - 6.6e-13 48.5 1.1 6.1e-05 22.7 0.0 4.2 3 2 0 3 3 2 2 AAA domain (dynein-related subfamily) TIP49 PF06068.8 gi|57641092|ref|YP_183570.1| - 8.2e-12 44.5 0.2 0.0001 21.1 0.0 3.0 3 0 0 3 3 3 2 TIP49 C-terminus AAA_33 PF13671.1 gi|57641092|ref|YP_183570.1| - 1.2e-11 44.6 0.0 0.00011 22.0 0.0 2.7 2 0 0 2 2 2 2 AAA domain AAA_17 PF13207.1 gi|57641092|ref|YP_183570.1| - 1.7e-11 44.9 4.2 9.3e-05 23.2 1.5 3.5 2 2 0 2 2 2 2 AAA domain Zeta_toxin PF06414.7 gi|57641092|ref|YP_183570.1| - 4e-10 39.1 1.5 0.00021 20.4 0.0 3.3 4 0 0 4 4 2 2 Zeta toxin IstB_IS21 PF01695.12 gi|57641092|ref|YP_183570.1| - 3.4e-09 36.3 0.0 0.0019 17.6 0.0 2.8 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_19 PF13245.1 gi|57641092|ref|YP_183570.1| - 9e-09 34.9 2.1 0.0025 17.5 0.0 3.2 3 0 0 3 3 2 2 Part of AAA domain Sigma54_activat PF00158.21 gi|57641092|ref|YP_183570.1| - 4.1e-08 32.8 0.1 0.027 13.9 0.0 4.1 2 2 0 2 2 2 2 Sigma-54 interaction domain Arch_ATPase PF01637.13 gi|57641092|ref|YP_183570.1| - 6.5e-08 32.5 4.5 0.0004 20.1 0.0 3.9 3 1 0 3 3 3 2 Archaeal ATPase AAA_28 PF13521.1 gi|57641092|ref|YP_183570.1| - 9.5e-08 32.1 0.0 0.01 15.8 0.0 2.8 2 0 0 2 2 2 2 AAA domain Bac_DnaA PF00308.13 gi|57641092|ref|YP_183570.1| - 9.6e-08 31.9 0.0 0.0048 16.5 0.0 2.6 2 0 0 2 2 2 2 Bacterial dnaA protein NACHT PF05729.7 gi|57641092|ref|YP_183570.1| - 1.1e-07 31.7 0.1 0.38 10.3 0.0 4.3 4 0 0 4 4 4 2 NACHT domain RNA_helicase PF00910.17 gi|57641092|ref|YP_183570.1| - 1.1e-07 31.9 0.0 0.019 15.1 0.0 2.7 2 0 0 2 2 2 2 RNA helicase AAA_24 PF13479.1 gi|57641092|ref|YP_183570.1| - 2.4e-07 30.5 0.0 0.016 14.8 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_18 PF13238.1 gi|57641092|ref|YP_183570.1| - 2.4e-07 31.1 3.3 0.019 15.2 0.0 3.4 3 0 0 3 3 3 2 AAA domain AAA_25 PF13481.1 gi|57641092|ref|YP_183570.1| - 3.2e-07 29.9 15.1 0.054 12.8 0.1 4.8 3 2 1 5 5 5 3 AAA domain Mg_chelatase PF01078.16 gi|57641092|ref|YP_183570.1| - 4.5e-07 29.2 0.4 0.029 13.5 0.0 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI DUF815 PF05673.8 gi|57641092|ref|YP_183570.1| - 1.2e-06 27.6 0.0 0.033 13.0 0.0 2.4 2 0 0 2 2 2 2 Protein of unknown function (DUF815) ABC_tran PF00005.22 gi|57641092|ref|YP_183570.1| - 4.7e-06 26.9 0.0 0.11 12.7 0.0 2.9 2 1 0 2 2 2 2 ABC transporter Vps4_C PF09336.5 gi|57641092|ref|YP_183570.1| - 7.8e-06 25.6 0.1 0.006 16.4 0.0 2.8 2 0 0 2 2 2 1 Vps4 C terminal oligomerisation domain Sigma54_activ_2 PF14532.1 gi|57641092|ref|YP_183570.1| - 9.6e-06 25.6 0.0 0.12 12.3 0.0 2.6 2 0 0 2 2 2 2 Sigma-54 interaction domain NB-ARC PF00931.17 gi|57641092|ref|YP_183570.1| - 1.5e-05 24.0 0.0 0.16 10.8 0.0 2.8 2 0 0 2 2 2 2 NB-ARC domain PhoH PF02562.11 gi|57641092|ref|YP_183570.1| - 2.1e-05 23.8 0.3 0.2 10.8 0.0 3.0 2 0 0 2 2 2 2 PhoH-like protein AAA_3 PF07726.6 gi|57641092|ref|YP_183570.1| - 2.9e-05 23.6 0.0 0.33 10.5 0.0 2.7 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) DUF2075 PF09848.4 gi|57641092|ref|YP_183570.1| - 3.7e-05 22.8 0.0 0.091 11.7 0.0 2.5 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) Parvo_NS1 PF01057.12 gi|57641092|ref|YP_183570.1| - 4.9e-05 22.3 0.1 0.25 10.1 0.0 2.3 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 AAA_11 PF13086.1 gi|57641092|ref|YP_183570.1| - 0.00012 21.7 0.1 0.28 10.7 0.1 2.5 2 1 0 2 2 2 2 AAA domain NTPase_1 PF03266.10 gi|57641092|ref|YP_183570.1| - 0.00014 21.5 7.6 1.9 8.2 0.0 5.5 4 2 2 6 6 5 1 NTPase ATP-synt_ab PF00006.20 gi|57641092|ref|YP_183570.1| - 0.0002 20.9 0.0 0.7 9.3 0.0 2.5 2 1 0 2 2 2 2 ATP synthase alpha/beta family, nucleotide-binding domain KaiC PF06745.8 gi|57641092|ref|YP_183570.1| - 0.00032 19.8 10.2 0.33 10.0 0.0 4.6 3 2 2 5 5 4 2 KaiC SKI PF01202.17 gi|57641092|ref|YP_183570.1| - 0.0004 20.3 0.8 1.7 8.5 0.0 3.5 3 0 0 3 3 3 1 Shikimate kinase KAP_NTPase PF07693.9 gi|57641092|ref|YP_183570.1| - 0.00045 19.3 0.3 4.8 6.0 0.0 3.9 2 2 1 3 3 3 0 KAP family P-loop domain AAA_10 PF12846.2 gi|57641092|ref|YP_183570.1| - 0.00066 19.2 1.8 0.068 12.6 0.1 3.6 3 2 0 3 3 3 1 AAA-like domain AAA_30 PF13604.1 gi|57641092|ref|YP_183570.1| - 0.0012 18.4 0.0 2.4 7.7 0.0 2.9 2 0 0 2 2 2 1 AAA domain T2SE PF00437.15 gi|57641092|ref|YP_183570.1| - 0.0015 17.4 0.0 1.5 7.6 0.0 2.6 2 1 0 2 2 2 2 Type II/IV secretion system protein UPF0079 PF02367.12 gi|57641092|ref|YP_183570.1| - 0.0016 18.0 0.1 2 8.0 0.0 2.8 2 0 0 2 2 2 1 Uncharacterised P-loop hydrolase UPF0079 ResIII PF04851.10 gi|57641092|ref|YP_183570.1| - 0.0025 17.6 0.0 2.1 8.1 0.0 2.5 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit Viral_helicase1 PF01443.13 gi|57641092|ref|YP_183570.1| - 0.0074 15.8 0.0 0.37 10.2 0.0 2.3 2 0 0 2 2 2 1 Viral (Superfamily 1) RNA helicase cobW PF02492.14 gi|57641092|ref|YP_183570.1| - 0.029 13.8 0.1 10 5.5 0.0 2.6 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain IPT PF01745.11 gi|57641092|ref|YP_183570.1| - 0.039 13.1 0.3 12 4.9 0.0 2.9 3 0 0 3 3 2 0 Isopentenyl transferase DAP3 PF10236.4 gi|57641092|ref|YP_183570.1| - 0.046 12.6 0.0 7.3 5.4 0.0 2.5 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 AFG1_ATPase PF03969.11 gi|57641092|ref|YP_183570.1| - 0.052 12.3 0.1 5.4 5.7 0.0 2.6 2 1 0 2 2 2 0 AFG1-like ATPase Molydop_binding PF01568.16 gi|57641092|ref|YP_183570.1| - 0.059 13.1 0.0 0.69 9.7 0.0 2.7 3 0 0 3 3 2 0 Molydopterin dinucleotide binding domain CPT PF07931.7 gi|57641092|ref|YP_183570.1| - 0.074 12.6 0.0 19 4.8 0.0 3.1 2 1 0 2 2 2 0 Chloramphenicol phosphotransferase-like protein KTI12 PF08433.5 gi|57641092|ref|YP_183570.1| - 0.079 12.1 0.2 11 5.0 0.0 2.8 3 0 0 3 3 3 0 Chromatin associated protein KTI12 Ead_Ea22 PF13935.1 gi|57641092|ref|YP_183570.1| - 0.099 12.9 3.2 6.5 7.0 2.6 3.2 3 0 0 3 3 3 0 Ead/Ea22-like protein Zot PF05707.7 gi|57641092|ref|YP_183570.1| - 0.11 11.9 1.7 28 4.1 0.1 4.0 2 2 0 2 2 2 0 Zonular occludens toxin (Zot) Lipase_GDSL_2 PF13472.1 gi|57641092|ref|YP_183570.1| - 0.15 12.1 0.1 30 4.6 0.0 3.3 2 1 0 2 2 2 0 GDSL-like Lipase/Acylhydrolase family AAA_23 PF13476.1 gi|57641092|ref|YP_183570.1| - 0.19 12.0 4.7 40 4.4 0.0 3.5 3 0 0 3 3 3 0 AAA domain DUF1456 PF07308.8 gi|57641092|ref|YP_183570.1| - 0.23 11.4 1.1 3.6 7.6 0.0 3.3 3 0 0 3 3 2 0 Protein of unknown function (DUF1456) AAA_21 PF13304.1 gi|57641092|ref|YP_183570.1| - 0.9 9.4 3.4 48 3.7 0.2 3.5 2 2 1 3 3 3 0 AAA domain Methyltransf_26 PF13659.1 gi|57641093|ref|YP_183571.1| - 1.7e-16 60.2 0.0 7.2e-16 58.2 0.0 2.0 1 1 0 1 1 1 1 Methyltransferase domain N6_Mtase PF02384.11 gi|57641093|ref|YP_183571.1| - 2.3e-08 33.5 0.0 1.5e-06 27.4 0.0 2.3 2 0 0 2 2 2 1 N-6 DNA Methylase TipAS PF07739.8 gi|57641093|ref|YP_183571.1| - 7.2e-06 26.3 3.6 0.0014 18.8 0.0 3.8 5 0 0 5 5 3 1 TipAS antibiotic-recognition domain UPF0020 PF01170.13 gi|57641093|ref|YP_183571.1| - 0.0002 21.0 0.0 0.0067 16.0 0.0 2.6 3 0 0 3 3 2 1 Putative RNA methylase family UPF0020 Methyltransf_23 PF13489.1 gi|57641093|ref|YP_183571.1| - 0.00037 20.2 0.0 0.4 10.3 0.0 3.5 3 0 0 3 3 3 1 Methyltransferase domain TBPIP PF07106.8 gi|57641093|ref|YP_183571.1| - 0.0014 18.2 6.0 0.0047 16.4 4.2 1.9 1 0 0 1 1 1 1 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Seryl_tRNA_N PF02403.17 gi|57641093|ref|YP_183571.1| - 0.003 17.5 5.0 0.003 17.5 3.5 2.4 2 0 0 2 2 2 1 Seryl-tRNA synthetase N-terminal domain Mnd1 PF03962.10 gi|57641093|ref|YP_183571.1| - 0.0033 17.1 5.9 0.0033 17.1 4.1 1.9 2 0 0 2 2 2 1 Mnd1 family DUF342 PF03961.8 gi|57641093|ref|YP_183571.1| - 0.012 14.1 3.1 0.021 13.2 2.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF342) Eco57I PF07669.6 gi|57641093|ref|YP_183571.1| - 0.016 15.5 0.0 0.074 13.4 0.0 2.2 2 1 0 2 2 2 0 Eco57I restriction-modification methylase Ax_dynein_light PF10211.4 gi|57641093|ref|YP_183571.1| - 0.027 14.3 3.7 0.084 12.6 2.6 1.8 1 0 0 1 1 1 0 Axonemal dynein light chain Uds1 PF15456.1 gi|57641093|ref|YP_183571.1| - 0.069 13.1 3.4 0.19 11.7 2.3 1.7 1 0 0 1 1 1 0 Up-regulated During Septation DUF3450 PF11932.3 gi|57641093|ref|YP_183571.1| - 0.093 11.9 1.0 0.22 10.7 0.7 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3450) AAA_32 PF13654.1 gi|57641093|ref|YP_183571.1| - 0.13 10.8 3.7 0.34 9.5 2.6 1.6 1 0 0 1 1 1 0 AAA domain Methyltransf_31 PF13847.1 gi|57641093|ref|YP_183571.1| - 0.16 11.5 0.0 0.93 9.0 0.0 2.4 2 1 0 2 2 1 0 Methyltransferase domain Nop25 PF09805.4 gi|57641093|ref|YP_183571.1| - 0.3 11.1 5.9 0.78 9.8 4.1 1.6 1 0 0 1 1 1 0 Nucleolar protein 12 (25kDa) Syntaxin-6_N PF09177.6 gi|57641093|ref|YP_183571.1| - 0.43 11.0 7.1 0.18 12.1 1.8 2.7 3 0 0 3 3 2 0 Syntaxin 6, N-terminal Snapin_Pallidin PF14712.1 gi|57641093|ref|YP_183571.1| - 0.47 10.8 5.1 10 6.5 2.7 2.9 1 1 1 2 2 2 0 Snapin/Pallidin AAA_13 PF13166.1 gi|57641093|ref|YP_183571.1| - 0.72 8.2 5.3 1.2 7.4 3.7 1.3 1 0 0 1 1 1 0 AAA domain Tho2 PF11262.3 gi|57641093|ref|YP_183571.1| - 0.81 8.6 2.8 1.5 7.7 1.9 1.4 1 0 0 1 1 1 0 Transcription factor/nuclear export subunit protein 2 OmpH PF03938.9 gi|57641093|ref|YP_183571.1| - 0.96 9.3 7.7 3.9 7.3 2.0 2.5 2 0 0 2 2 2 0 Outer membrane protein (OmpH-like) RmuC PF02646.11 gi|57641093|ref|YP_183571.1| - 1 8.1 5.5 0.53 9.0 0.1 2.5 2 1 1 3 3 3 0 RmuC family V_ATPase_I PF01496.14 gi|57641093|ref|YP_183571.1| - 1.1 7.0 3.4 1.8 6.3 2.4 1.2 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family APG6 PF04111.7 gi|57641093|ref|YP_183571.1| - 1.4 7.9 8.7 2.9 6.8 6.1 1.5 1 0 0 1 1 1 0 Autophagy protein Apg6 ATG16 PF08614.6 gi|57641093|ref|YP_183571.1| - 1.6 8.5 8.3 3.8 7.2 5.7 1.5 1 0 0 1 1 1 0 Autophagy protein 16 (ATG16) DUF1664 PF07889.7 gi|57641093|ref|YP_183571.1| - 5.5 6.8 6.8 2.1 8.1 1.8 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) Pterin_bind PF00809.17 gi|57641096|ref|YP_183574.1| - 1.4e-48 165.0 0.0 1.9e-48 164.6 0.0 1.2 1 0 0 1 1 1 1 Pterin binding enzyme CdhD PF03599.11 gi|57641096|ref|YP_183574.1| - 0.00031 19.3 0.0 0.00041 18.9 0.0 1.2 1 0 0 1 1 1 1 CO dehydrogenase/acetyl-CoA synthase delta subunit DUF561 PF04481.7 gi|57641096|ref|YP_183574.1| - 0.017 14.0 0.3 0.048 12.6 0.1 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF561) QRPTase_C PF01729.14 gi|57641096|ref|YP_183574.1| - 0.067 12.7 0.1 0.12 11.8 0.1 1.4 1 0 0 1 1 1 0 Quinolinate phosphoribosyl transferase, C-terminal domain UPF0118 PF01594.11 gi|57641097|ref|YP_183575.1| - 4.2e-43 147.5 29.5 5.6e-43 147.1 20.4 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF20 Ph1570 PF09638.5 gi|57641098|ref|YP_183576.1| - 7.3e-82 272.6 2.1 8.2e-82 272.4 1.4 1.0 1 0 0 1 1 1 1 Ph1570 protein Peptidase_S49 PF01343.13 gi|57641099|ref|YP_183577.1| - 4.2e-42 143.5 0.2 5.9e-42 143.0 0.2 1.2 1 0 0 1 1 1 1 Peptidase family S49 CLP_protease PF00574.18 gi|57641099|ref|YP_183577.1| - 6.3e-05 22.7 0.2 0.00015 21.5 0.1 1.5 1 0 0 1 1 1 1 Clp protease AP_endonuc_2 PF01261.19 gi|57641100|ref|YP_183578.1| - 9.3e-19 67.5 0.1 1.2e-18 67.2 0.0 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel Ribonucleas_3_2 PF11469.3 gi|57641101|ref|YP_183579.1| - 2.1e-64 215.0 0.1 2.4e-64 214.8 0.1 1.0 1 0 0 1 1 1 1 Ribonuclease III RNA_pol_L_2 PF13656.1 gi|57641102|ref|YP_183580.1| - 1.9e-20 72.0 0.1 2.3e-20 71.7 0.1 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain RNA_pol_L PF01193.19 gi|57641102|ref|YP_183580.1| - 2.5e-12 45.7 0.0 3.2e-12 45.3 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain DUF2067 PF09840.4 gi|57641103|ref|YP_183581.1| - 1.1e-63 214.1 8.0 1.3e-63 214.0 5.6 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2067) DUF61 PF01886.11 gi|57641103|ref|YP_183581.1| - 0.0024 17.7 0.2 0.0024 17.7 0.2 2.0 2 1 0 3 3 3 1 Protein of unknown function DUF61 Foamy_virus_ENV PF03408.9 gi|57641103|ref|YP_183581.1| - 0.064 10.7 0.0 0.078 10.5 0.0 1.1 1 0 0 1 1 1 0 Foamy virus envelope protein DUF3166 PF11365.3 gi|57641103|ref|YP_183581.1| - 0.088 13.2 0.9 0.38 11.2 0.0 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF3166) ECR1_N PF14382.1 gi|57641104|ref|YP_183582.1| - 1.2e-09 37.2 0.0 2.2e-09 36.4 0.0 1.4 1 0 0 1 1 1 1 Exosome complex exonuclease RRP4 N-terminal region EXOSC1 PF10447.4 gi|57641104|ref|YP_183582.1| - 2.5e-09 36.9 5.5 2e-08 34.0 2.8 2.8 2 2 0 2 2 2 1 Exosome component EXOSC1/CSL4 S1 PF00575.18 gi|57641104|ref|YP_183582.1| - 6.6e-07 29.3 3.5 0.0038 17.2 0.1 2.4 2 0 0 2 2 2 2 S1 RNA binding domain Auto_anti-p27 PF06677.7 gi|57641104|ref|YP_183582.1| - 0.00061 19.4 0.9 0.0011 18.7 0.6 1.3 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DZR PF12773.2 gi|57641104|ref|YP_183582.1| - 0.012 15.3 0.2 0.02 14.6 0.2 1.2 1 0 0 1 1 1 0 Double zinc ribbon Prok-RING_1 PF14446.1 gi|57641104|ref|YP_183582.1| - 0.019 14.6 0.4 0.031 13.9 0.3 1.3 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 zf-FPG_IleRS PF06827.9 gi|57641104|ref|YP_183582.1| - 0.035 13.7 2.9 0.9 9.2 0.1 2.4 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS Zn_Tnp_IS1595 PF12760.2 gi|57641104|ref|YP_183582.1| - 0.06 13.1 1.2 0.093 12.5 0.0 1.8 2 0 0 2 2 2 0 Transposase zinc-ribbon domain ADK_lid PF05191.9 gi|57641104|ref|YP_183582.1| - 0.14 11.8 2.1 2.3 7.9 0.1 2.4 2 0 0 2 2 2 0 Adenylate kinase, active site lid zinc_ribbon_2 PF13240.1 gi|57641104|ref|YP_183582.1| - 0.14 11.6 0.9 12 5.5 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-RING_3 PF14369.1 gi|57641104|ref|YP_183582.1| - 4.5 7.3 5.0 4.7 7.2 1.2 2.5 2 1 1 3 3 3 0 zinc-finger tRNA-Thr_ED PF08915.6 gi|57641105|ref|YP_183583.1| - 3.6e-59 198.6 0.4 7.3e-59 197.6 0.3 1.5 1 0 0 1 1 1 1 Archaea-specific editing domain of threonyl-tRNA synthetase tRNA-synt_2b PF00587.20 gi|57641105|ref|YP_183583.1| - 5.5e-27 94.4 1.1 1.1e-26 93.4 0.8 1.5 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|57641105|ref|YP_183583.1| - 8e-26 89.8 3.7 5.9e-25 87.0 1.4 2.8 2 0 0 2 2 2 1 Anticodon binding domain DUF3141 PF11339.3 gi|57641106|ref|YP_183584.1| - 0.026 12.9 0.0 0.036 12.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3141) DsrH PF04077.7 gi|57641106|ref|YP_183584.1| - 0.03 13.9 0.0 0.048 13.3 0.0 1.3 1 0 0 1 1 1 0 DsrH like protein TBPIP_N PF15517.1 gi|57641107|ref|YP_183585.1| - 6.1e-47 157.3 0.7 1.4e-46 156.1 0.4 1.7 2 0 0 2 2 2 1 TBP-interacting protein N-terminus zf-C2H2 PF00096.21 gi|57641107|ref|YP_183585.1| - 0.0094 16.2 0.2 0.034 14.4 0.0 2.0 2 0 0 2 2 2 1 Zinc finger, C2H2 type Desulfoferrod_N PF06397.7 gi|57641107|ref|YP_183585.1| - 0.048 13.0 0.2 0.11 11.9 0.1 1.6 1 0 0 1 1 1 0 Desulfoferrodoxin, N-terminal domain C1_2 PF03107.11 gi|57641107|ref|YP_183585.1| - 0.17 12.0 1.4 0.34 11.0 1.0 1.5 1 0 0 1 1 1 0 C1 domain Prenyltransf PF01255.14 gi|57641108|ref|YP_183586.1| - 2e-88 295.2 0.1 2.3e-88 295.0 0.1 1.0 1 0 0 1 1 1 1 Putative undecaprenyl diphosphate synthase TAFH PF07531.9 gi|57641108|ref|YP_183586.1| - 0.0055 16.3 0.0 0.016 14.8 0.0 1.8 2 0 0 2 2 2 1 NHR1 homology to TAF 2OG-FeII_Oxy_2 PF13532.1 gi|57641108|ref|YP_183586.1| - 0.088 12.6 0.0 0.13 12.1 0.0 1.2 1 0 0 1 1 1 0 2OG-Fe(II) oxygenase superfamily Hexapep PF00132.19 gi|57641109|ref|YP_183587.1| - 1.5e-16 59.0 11.5 5.7e-08 31.9 2.1 4.1 3 1 1 4 4 4 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|57641109|ref|YP_183587.1| - 5.6e-05 22.6 7.3 0.0047 16.4 0.4 2.8 2 1 0 3 3 3 2 Hexapeptide repeat of succinyl-transferase Hjc PF01870.13 gi|57641110|ref|YP_183588.1| - 1.6e-31 107.7 0.0 2e-31 107.4 0.0 1.1 1 0 0 1 1 1 1 Archaeal holliday junction resolvase (hjc) YcfA PF07927.7 gi|57641110|ref|YP_183588.1| - 0.00028 20.7 0.3 0.00074 19.3 0.1 1.8 2 0 0 2 2 2 1 YcfA-like protein UPF0102 PF02021.12 gi|57641110|ref|YP_183588.1| - 0.02 14.7 0.0 0.03 14.2 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised protein family UPF0102 NERD PF08378.6 gi|57641110|ref|YP_183588.1| - 0.025 14.8 0.0 0.027 14.7 0.0 1.2 1 0 0 1 1 1 0 Nuclease-related domain CarboxypepD_reg PF13620.1 gi|57641111|ref|YP_183589.1| - 0.00054 19.9 17.0 0.12 12.3 1.4 5.5 6 1 1 7 7 7 2 Carboxypeptidase regulatory-like domain Big_3 PF07523.7 gi|57641111|ref|YP_183589.1| - 0.0015 18.5 2.0 0.016 15.2 0.2 3.4 3 0 0 3 3 3 1 Bacterial Ig-like domain (group 3) DUF2393 PF09624.5 gi|57641111|ref|YP_183589.1| - 0.012 15.0 0.1 0.012 15.0 0.1 3.3 4 0 0 4 4 4 0 Protein of unknown function (DUF2393) DUF4198 PF10670.4 gi|57641111|ref|YP_183589.1| - 0.016 15.2 0.2 0.38 10.7 0.0 2.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4198) Filamin PF00630.14 gi|57641111|ref|YP_183589.1| - 0.061 13.8 0.2 0.87 10.1 0.0 2.9 3 1 0 3 3 3 0 Filamin/ABP280 repeat CARDB PF07705.6 gi|57641111|ref|YP_183589.1| - 0.074 13.1 6.7 0.24 11.4 0.1 3.4 3 1 0 3 3 3 0 CARDB Cna_B PF05738.8 gi|57641111|ref|YP_183589.1| - 0.22 11.2 6.6 8.5 6.2 0.0 4.2 3 1 0 3 3 3 0 Cna protein B-type domain MGC-24 PF05283.6 gi|57641111|ref|YP_183589.1| - 4.5 7.0 11.5 9.1 6.0 8.0 1.4 1 0 0 1 1 1 0 Multi-glycosylated core protein 24 (MGC-24) Peptidase_M42 PF05343.9 gi|57641112|ref|YP_183590.1| - 8.8e-100 333.2 0.3 1e-99 333.0 0.2 1.0 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.23 gi|57641112|ref|YP_183590.1| - 1.4e-10 41.0 0.1 2.2e-10 40.3 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M18 PF02127.10 gi|57641112|ref|YP_183590.1| - 1.5e-06 26.9 0.0 0.015 13.8 0.0 2.4 2 0 0 2 2 2 2 Aminopeptidase I zinc metalloprotease (M18) Peptidase_M28 PF04389.12 gi|57641112|ref|YP_183590.1| - 0.0018 18.0 0.1 0.014 15.1 0.0 2.1 2 0 0 2 2 2 1 Peptidase family M28 Peptidase_M54 PF07998.6 gi|57641113|ref|YP_183591.1| - 9.8e-33 113.5 0.2 8.3e-32 110.5 0.2 1.9 1 1 0 1 1 1 1 Peptidase family M54 Reprolysin_2 PF13574.1 gi|57641113|ref|YP_183591.1| - 0.0015 18.5 0.0 0.0019 18.3 0.0 1.2 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Peptidase_M10 PF00413.19 gi|57641113|ref|YP_183591.1| - 0.0023 17.6 0.0 0.0036 17.0 0.0 1.2 1 0 0 1 1 1 1 Matrixin Metallopep PF12044.3 gi|57641113|ref|YP_183591.1| - 0.0039 15.7 0.8 0.0055 15.2 0.6 1.1 1 0 0 1 1 1 1 Putative peptidase family Peptidase_M43 PF05572.8 gi|57641113|ref|YP_183591.1| - 0.0069 16.0 0.0 0.0098 15.4 0.0 1.2 1 0 0 1 1 1 1 Pregnancy-associated plasma protein-A Peptidase_M66 PF10462.4 gi|57641113|ref|YP_183591.1| - 0.011 14.6 0.0 0.016 14.0 0.0 1.2 1 0 0 1 1 1 0 Peptidase M66 Reprolysin_3 PF13582.1 gi|57641113|ref|YP_183591.1| - 0.016 15.7 0.0 0.02 15.3 0.0 1.3 1 0 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like Reprolysin_5 PF13688.1 gi|57641113|ref|YP_183591.1| - 0.018 14.9 0.0 0.019 14.8 0.0 1.2 1 0 0 1 1 1 0 Metallo-peptidase family M12 Reprolysin_4 PF13583.1 gi|57641113|ref|YP_183591.1| - 0.026 14.0 0.0 0.032 13.7 0.0 1.2 1 0 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like DUF1025 PF06262.6 gi|57641113|ref|YP_183591.1| - 0.043 13.6 0.0 0.068 12.9 0.0 1.3 1 0 0 1 1 1 0 Possibl zinc metallo-peptidase CYTH PF01928.16 gi|57641114|ref|YP_183592.1| - 1.7e-39 135.4 4.9 1.9e-39 135.2 3.4 1.0 1 0 0 1 1 1 1 CYTH domain TPR_19 PF14559.1 gi|57641115|ref|YP_183593.1| - 0.00098 19.4 1.0 0.012 15.9 0.0 3.1 3 1 1 4 4 4 1 Tetratricopeptide repeat TPR_12 PF13424.1 gi|57641115|ref|YP_183593.1| - 0.0012 18.7 0.7 0.018 15.0 0.5 2.6 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_10 PF13374.1 gi|57641115|ref|YP_183593.1| - 0.0092 15.8 0.1 1.6 8.7 0.0 3.0 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_11 PF13414.1 gi|57641115|ref|YP_183593.1| - 0.012 15.2 0.6 0.054 13.1 0.1 2.2 1 1 1 2 2 2 0 TPR repeat TPR_16 PF13432.1 gi|57641115|ref|YP_183593.1| - 0.018 15.7 0.3 0.12 13.0 0.1 2.5 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_14 PF13428.1 gi|57641115|ref|YP_183593.1| - 0.027 15.0 0.6 1.8 9.3 0.0 3.4 2 1 1 3 3 3 0 Tetratricopeptide repeat TPR_2 PF07719.12 gi|57641115|ref|YP_183593.1| - 0.037 13.9 1.1 2.4 8.3 0.0 3.3 3 1 0 3 3 2 0 Tetratricopeptide repeat TPR_7 PF13176.1 gi|57641115|ref|YP_183593.1| - 0.053 13.3 0.3 6.9 6.7 0.0 2.9 2 0 0 2 2 2 0 Tetratricopeptide repeat CemA PF03040.9 gi|57641115|ref|YP_183593.1| - 0.081 12.5 0.1 0.15 11.6 0.1 1.5 1 0 0 1 1 1 0 CemA family TPR_4 PF07721.9 gi|57641115|ref|YP_183593.1| - 0.13 12.7 0.2 1.1 9.9 0.0 2.6 3 0 0 3 3 2 0 Tetratricopeptide repeat TPR_6 PF13174.1 gi|57641115|ref|YP_183593.1| - 0.13 12.7 0.1 19 5.9 0.0 3.4 3 0 0 3 3 3 0 Tetratricopeptide repeat ABC_tran PF00005.22 gi|57641116|ref|YP_183594.1| - 1.1e-21 77.5 0.0 1.5e-21 77.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_10 PF12846.2 gi|57641116|ref|YP_183594.1| - 4.8e-07 29.5 0.4 0.004 16.6 0.0 2.2 2 0 0 2 2 2 2 AAA-like domain SMC_N PF02463.14 gi|57641116|ref|YP_183594.1| - 7.3e-06 25.3 0.2 0.00025 20.3 0.2 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_25 PF13481.1 gi|57641116|ref|YP_183594.1| - 0.00015 21.2 0.0 0.032 13.6 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_21 PF13304.1 gi|57641116|ref|YP_183594.1| - 0.00016 21.7 0.2 0.037 14.0 0.2 2.2 1 1 1 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|57641116|ref|YP_183594.1| - 0.00029 20.3 0.2 0.00052 19.4 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_18 PF13238.1 gi|57641116|ref|YP_183594.1| - 0.0026 18.0 3.0 1.4 9.1 0.0 2.2 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|57641116|ref|YP_183594.1| - 0.013 15.4 0.2 0.02 14.8 0.1 1.4 1 1 0 1 1 1 0 AAA ATPase domain ABC_ATPase PF09818.4 gi|57641116|ref|YP_183594.1| - 0.026 13.1 0.2 4.5 5.7 0.1 2.6 2 1 0 2 2 2 0 Predicted ATPase of the ABC class AAA_22 PF13401.1 gi|57641116|ref|YP_183594.1| - 0.047 13.8 0.1 0.32 11.1 0.1 2.1 2 0 0 2 2 2 0 AAA domain DUF258 PF03193.11 gi|57641116|ref|YP_183594.1| - 0.049 12.8 0.0 0.069 12.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_17 PF13207.1 gi|57641116|ref|YP_183594.1| - 0.07 13.9 3.7 0.073 13.9 1.0 2.0 2 1 0 2 2 2 0 AAA domain ArgK PF03308.11 gi|57641116|ref|YP_183594.1| - 0.076 11.7 0.5 0.17 10.6 0.0 1.8 2 0 0 2 2 2 0 ArgK protein MobB PF03205.9 gi|57641116|ref|YP_183594.1| - 0.09 12.4 0.3 0.33 10.6 0.1 1.9 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B NB-ARC PF00931.17 gi|57641116|ref|YP_183594.1| - 0.12 11.1 0.0 0.18 10.6 0.0 1.4 1 1 0 1 1 1 0 NB-ARC domain T2SE PF00437.15 gi|57641116|ref|YP_183594.1| - 0.12 11.2 0.0 0.29 9.9 0.0 1.6 2 0 0 2 2 2 0 Type II/IV secretion system protein PhoH PF02562.11 gi|57641116|ref|YP_183594.1| - 0.13 11.5 0.0 0.31 10.2 0.0 1.6 2 0 0 2 2 2 0 PhoH-like protein TrkH PF02386.11 gi|57641117|ref|YP_183595.1| - 5.4e-70 235.7 26.4 2.3e-69 233.6 13.0 2.1 2 0 0 2 2 2 2 Cation transport protein COX2_TM PF02790.10 gi|57641117|ref|YP_183595.1| - 0.25 11.3 6.1 3.9 7.4 0.1 3.2 2 1 0 3 3 3 0 Cytochrome C oxidase subunit II, transmembrane domain Peptidase_M24 PF00557.19 gi|57641118|ref|YP_183596.1| - 1.6e-48 165.0 0.2 1.9e-48 164.7 0.1 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 ATP-cone PF03477.11 gi|57641118|ref|YP_183596.1| - 0.091 13.1 0.1 4 7.9 0.0 2.4 2 0 0 2 2 2 0 ATP cone domain DUF4313 PF14190.1 gi|57641119|ref|YP_183597.1| - 0.024 14.3 0.5 0.35 10.6 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4313) IF2_N PF04760.10 gi|57641119|ref|YP_183597.1| - 0.06 12.9 3.2 0.063 12.9 0.1 2.4 3 0 0 3 3 3 0 Translation initiation factor IF-2, N-terminal region Chlamy_scaf PF09675.5 gi|57641119|ref|YP_183597.1| - 0.079 12.9 0.1 0.085 12.8 0.1 1.3 1 1 0 1 1 1 0 Chlamydia-phage Chp2 scaffold (Chlamy_scaf) DUF932 PF06067.6 gi|57641119|ref|YP_183597.1| - 0.1 11.9 0.2 0.12 11.6 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF932) HTH_3 PF01381.17 gi|57641119|ref|YP_183597.1| - 0.18 11.6 1.6 1.6 8.6 0.0 2.7 3 0 0 3 3 3 0 Helix-turn-helix Tropomodulin PF03250.9 gi|57641119|ref|YP_183597.1| - 0.24 10.8 2.2 0.3 10.5 1.6 1.1 1 0 0 1 1 1 0 Tropomodulin DUF1153 PF06627.6 gi|57641119|ref|YP_183597.1| - 0.32 10.8 2.4 0.34 10.7 0.5 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF1153) PIN_3 PF13470.1 gi|57641120|ref|YP_183598.1| - 1.3e-20 74.2 0.0 1.6e-20 73.9 0.0 1.1 1 0 0 1 1 1 1 PIN domain PIN_2 PF10130.4 gi|57641120|ref|YP_183598.1| - 0.011 15.7 0.1 0.014 15.4 0.0 1.2 1 0 0 1 1 1 0 PIN domain PIN PF01850.16 gi|57641120|ref|YP_183598.1| - 0.073 13.3 0.2 0.12 12.7 0.2 1.3 1 0 0 1 1 1 0 PIN domain DUF1836 PF08876.6 gi|57641120|ref|YP_183598.1| - 0.1 12.3 1.4 0.14 11.8 0.3 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF1836) CBS PF00571.23 gi|57641121|ref|YP_183599.1| - 1e-44 150.0 15.3 1.6e-17 62.9 0.3 4.3 4 0 0 4 4 4 4 CBS domain PRC PF05239.11 gi|57641121|ref|YP_183599.1| - 0.079 12.8 1.6 12 5.8 0.1 3.2 3 0 0 3 3 3 0 PRC-barrel domain DUF835 PF05763.7 gi|57641122|ref|YP_183600.1| - 2.5e-39 133.9 0.2 3.7e-39 133.3 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF835) DNA_pol3_beta PF00712.14 gi|57641122|ref|YP_183600.1| - 0.053 13.4 0.0 10 6.0 0.0 2.4 2 0 0 2 2 2 0 DNA polymerase III beta subunit, N-terminal domain DUF973 PF06157.6 gi|57641122|ref|YP_183600.1| - 0.72 8.7 10.9 0.085 11.8 4.7 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF973) NTP_transferase PF00483.18 gi|57641123|ref|YP_183601.1| - 2.4e-39 135.1 0.0 3.1e-39 134.7 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.19 gi|57641123|ref|YP_183601.1| - 9.9e-24 81.7 28.6 1.2e-08 34.0 0.7 4.5 3 1 1 4 4 4 4 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.2 gi|57641123|ref|YP_183601.1| - 1.5e-16 60.9 0.0 1.9e-16 60.5 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep_2 PF14602.1 gi|57641123|ref|YP_183601.1| - 5.1e-13 48.3 21.3 7e-09 35.0 0.3 4.6 4 0 0 4 4 4 4 Hexapeptide repeat of succinyl-transferase IspD PF01128.14 gi|57641123|ref|YP_183601.1| - 7.9e-05 22.2 0.0 0.00013 21.5 0.0 1.4 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Glyco_tranf_2_3 PF13641.1 gi|57641123|ref|YP_183601.1| - 0.0034 17.1 0.0 0.0054 16.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glycos_transf_2 PF00535.21 gi|57641123|ref|YP_183601.1| - 0.0053 16.4 0.0 0.0095 15.6 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 BacA PF02673.13 gi|57641124|ref|YP_183602.1| - 3.3e-28 98.6 9.0 3.7e-28 98.4 6.2 1.0 1 0 0 1 1 1 1 Bacitracin resistance protein BacA DUF3487 PF11990.3 gi|57641124|ref|YP_183602.1| - 0.074 12.4 0.1 0.074 12.4 0.1 2.3 2 1 1 3 3 3 0 Protein of unknown function (DUF3487) NOG1 PF06858.9 gi|57641125|ref|YP_183603.1| - 5.8e-24 83.7 0.0 1.1e-23 82.7 0.0 1.5 1 0 0 1 1 1 1 Nucleolar GTP-binding protein 1 (NOG1) MMR_HSR1 PF01926.18 gi|57641125|ref|YP_183603.1| - 1.8e-20 73.0 0.0 3.9e-20 71.9 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|57641125|ref|YP_183603.1| - 2.3e-19 69.2 0.0 3.7e-19 68.5 0.0 1.3 1 0 0 1 1 1 1 Ferrous iron transport protein B PduV-EutP PF10662.4 gi|57641125|ref|YP_183603.1| - 1.3e-07 31.1 0.0 3.7e-07 29.7 0.0 1.7 1 1 0 1 1 1 1 Ethanolamine utilisation - propanediol utilisation GTP_EFTU PF00009.22 gi|57641125|ref|YP_183603.1| - 1.8e-07 30.7 0.2 0.00032 20.1 0.1 3.1 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain Miro PF08477.8 gi|57641125|ref|YP_183603.1| - 3.3e-07 30.8 0.0 6.4e-07 29.8 0.0 1.5 1 0 0 1 1 1 1 Miro-like protein Arf PF00025.16 gi|57641125|ref|YP_183603.1| - 1.6e-05 24.2 0.0 0.00018 20.8 0.0 2.2 1 1 0 1 1 1 1 ADP-ribosylation factor family Ras PF00071.17 gi|57641125|ref|YP_183603.1| - 1.8e-05 24.1 0.0 8.2e-05 22.0 0.0 1.9 1 1 0 1 1 1 1 Ras family ATP_bind_1 PF03029.12 gi|57641125|ref|YP_183603.1| - 0.00015 21.4 0.0 0.009 15.5 0.0 2.3 1 1 0 2 2 2 1 Conserved hypothetical ATP binding protein AAA_16 PF13191.1 gi|57641125|ref|YP_183603.1| - 0.0018 18.3 0.0 0.026 14.4 0.0 2.8 1 1 1 2 2 2 1 AAA ATPase domain DUF258 PF03193.11 gi|57641125|ref|YP_183603.1| - 0.0021 17.2 0.0 0.015 14.5 0.0 2.4 2 1 0 2 2 2 1 Protein of unknown function, DUF258 Dynamin_N PF00350.18 gi|57641125|ref|YP_183603.1| - 0.0021 17.8 0.0 2.1 8.1 0.0 2.5 1 1 1 2 2 2 2 Dynamin family cobW PF02492.14 gi|57641125|ref|YP_183603.1| - 0.0024 17.3 0.0 0.59 9.5 0.0 2.3 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain ArgK PF03308.11 gi|57641125|ref|YP_183603.1| - 0.0038 16.0 0.6 1.5 7.5 0.0 2.8 3 1 0 3 3 3 2 ArgK protein AAA_18 PF13238.1 gi|57641125|ref|YP_183603.1| - 0.0047 17.2 0.1 0.019 15.2 0.1 2.3 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|57641125|ref|YP_183603.1| - 0.0049 17.6 1.5 0.021 15.6 0.0 2.7 2 2 0 2 2 2 1 AAA domain AIG1 PF04548.11 gi|57641125|ref|YP_183603.1| - 0.0067 15.5 0.0 0.014 14.5 0.0 1.6 1 0 0 1 1 1 1 AIG1 family MobB PF03205.9 gi|57641125|ref|YP_183603.1| - 0.0067 16.1 0.0 0.015 14.9 0.0 1.6 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_28 PF13521.1 gi|57641125|ref|YP_183603.1| - 0.02 14.8 0.5 0.17 11.8 0.0 2.6 3 1 0 3 3 3 0 AAA domain AAA_22 PF13401.1 gi|57641125|ref|YP_183603.1| - 0.033 14.3 0.1 0.11 12.6 0.0 2.1 2 2 0 2 2 2 0 AAA domain AAA_23 PF13476.1 gi|57641125|ref|YP_183603.1| - 0.058 13.7 0.2 0.27 11.5 0.2 2.1 1 1 0 1 1 1 0 AAA domain SRPRB PF09439.5 gi|57641125|ref|YP_183603.1| - 0.071 12.3 0.2 0.15 11.2 0.0 1.7 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit AAA_29 PF13555.1 gi|57641125|ref|YP_183603.1| - 0.089 12.3 0.0 0.21 11.1 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain ABC_tran PF00005.22 gi|57641125|ref|YP_183603.1| - 0.15 12.3 0.0 0.47 10.7 0.0 1.9 2 0 0 2 2 2 0 ABC transporter Ribosomal_S8e PF01201.17 gi|57641126|ref|YP_183604.1| - 4.8e-38 130.2 4.6 5.3e-38 130.1 3.2 1.0 1 0 0 1 1 1 1 Ribosomal protein S8e DUF4013 PF13197.1 gi|57641127|ref|YP_183605.1| - 0.0067 15.7 25.8 0.0067 15.7 17.9 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF4013) CTP_synth_N PF06418.9 gi|57641128|ref|YP_183606.1| - 5.6e-131 435.6 0.0 7.4e-131 435.2 0.0 1.1 1 0 0 1 1 1 1 CTP synthase N-terminus GATase PF00117.23 gi|57641128|ref|YP_183606.1| - 1.1e-51 175.0 0.0 2.5e-51 173.8 0.0 1.6 2 0 0 2 2 2 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|57641128|ref|YP_183606.1| - 4.8e-09 35.9 0.0 6.7e-08 32.2 0.0 2.3 1 1 0 1 1 1 1 Peptidase C26 CbiA PF01656.18 gi|57641128|ref|YP_183606.1| - 1.2e-06 28.0 0.0 1.9e-06 27.4 0.0 1.4 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain GATase_3 PF07685.9 gi|57641128|ref|YP_183606.1| - 0.088 12.3 0.0 0.19 11.2 0.0 1.6 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain DUF555 PF04475.7 gi|57641129|ref|YP_183607.1| - 5.7e-43 145.0 1.8 6.2e-43 144.9 0.8 1.3 2 0 0 2 2 2 1 Protein of unknown function (DUF555) Prok-RING_4 PF14447.1 gi|57641129|ref|YP_183607.1| - 0.055 13.0 0.1 0.11 12.1 0.1 1.4 1 0 0 1 1 1 0 Prokaryotic RING finger family 4 FdhE PF04216.7 gi|57641129|ref|YP_183607.1| - 0.11 12.1 0.0 0.17 11.5 0.0 1.2 1 0 0 1 1 1 0 Protein involved in formate dehydrogenase formation DUF3552 PF12072.3 gi|57641129|ref|YP_183607.1| - 0.14 11.3 1.0 0.28 10.3 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF3552) ArgJ PF01960.13 gi|57641129|ref|YP_183607.1| - 0.19 10.1 0.7 0.76 8.1 0.0 1.9 2 0 0 2 2 2 0 ArgJ family DUF357 PF04010.8 gi|57641130|ref|YP_183608.1| - 4.3e-32 109.6 1.8 5.1e-32 109.3 1.3 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF357) SLH PF00395.15 gi|57641130|ref|YP_183608.1| - 0.16 11.7 0.7 0.48 10.2 0.0 1.9 1 1 1 2 2 2 0 S-layer homology domain HEPN PF05168.9 gi|57641130|ref|YP_183608.1| - 0.22 11.4 2.3 0.26 11.1 0.2 1.9 2 0 0 2 2 2 0 HEPN domain DUF1825 PF08855.5 gi|57641131|ref|YP_183609.1| - 0.00058 19.8 0.2 0.0019 18.1 0.0 1.7 2 0 0 2 2 2 1 Domain of unknown function (DUF1825) Radical_SAM PF04055.16 gi|57641133|ref|YP_183611.1| - 1.4e-17 64.4 0.0 1.7e-17 64.1 0.0 1.1 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|57641133|ref|YP_183611.1| - 1.2e-14 54.3 0.0 2.2e-14 53.5 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|57641133|ref|YP_183611.1| - 3.8e-10 40.0 0.0 7.4e-10 39.0 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain TIP49 PF06068.8 gi|57641134|ref|YP_183612.1| - 1.7e-162 540.7 5.4 2e-162 540.5 3.7 1.0 1 0 0 1 1 1 1 TIP49 C-terminus AAA PF00004.24 gi|57641134|ref|YP_183612.1| - 3.5e-11 43.4 0.1 1.2e-06 28.7 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.7 gi|57641134|ref|YP_183612.1| - 8.4e-09 34.8 4.8 0.00018 20.6 0.0 3.1 2 1 0 2 2 2 2 Holliday junction DNA helicase ruvB N-terminus AAA_16 PF13191.1 gi|57641134|ref|YP_183612.1| - 1.5e-07 31.6 0.0 1.6e-05 24.9 0.0 2.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|57641134|ref|YP_183612.1| - 1.7e-06 28.1 0.0 0.087 12.9 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_5 PF07728.9 gi|57641134|ref|YP_183612.1| - 5.7e-05 22.8 0.1 0.0052 16.5 0.0 2.4 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) Sigma54_activat PF00158.21 gi|57641134|ref|YP_183612.1| - 0.00036 20.0 0.2 0.13 11.7 0.0 2.4 2 0 0 2 2 2 1 Sigma-54 interaction domain ResIII PF04851.10 gi|57641134|ref|YP_183612.1| - 0.00038 20.3 0.1 0.0025 17.6 0.1 2.2 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_14 PF13173.1 gi|57641134|ref|YP_183612.1| - 0.00091 19.1 0.0 0.93 9.3 0.0 2.6 2 0 0 2 2 2 1 AAA domain Mg_chelatase PF01078.16 gi|57641134|ref|YP_183612.1| - 0.0014 17.8 1.0 0.049 12.7 0.2 2.3 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_33 PF13671.1 gi|57641134|ref|YP_183612.1| - 0.0022 17.9 0.0 0.021 14.6 0.0 2.4 2 1 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|57641134|ref|YP_183612.1| - 0.0025 18.6 1.7 0.014 16.2 0.1 2.7 2 2 0 2 2 2 1 AAA domain DNA_pol3_delta PF06144.8 gi|57641134|ref|YP_183612.1| - 0.0027 17.2 0.5 0.018 14.5 0.1 2.2 2 0 0 2 2 2 1 DNA polymerase III, delta subunit Zeta_toxin PF06414.7 gi|57641134|ref|YP_183612.1| - 0.0036 16.4 0.1 0.0086 15.1 0.1 1.6 1 0 0 1 1 1 1 Zeta toxin AAA_23 PF13476.1 gi|57641134|ref|YP_183612.1| - 0.0043 17.4 2.3 0.026 14.8 1.6 2.1 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|57641134|ref|YP_183612.1| - 0.006 16.8 0.0 0.017 15.4 0.0 1.8 1 0 0 1 1 1 1 AAA domain ABC_tran PF00005.22 gi|57641134|ref|YP_183612.1| - 0.008 16.4 0.1 0.024 14.9 0.0 1.8 2 0 0 2 2 2 1 ABC transporter AAA_19 PF13245.1 gi|57641134|ref|YP_183612.1| - 0.0087 15.7 0.1 0.028 14.1 0.1 2.0 1 0 0 1 1 1 1 Part of AAA domain IstB_IS21 PF01695.12 gi|57641134|ref|YP_183612.1| - 0.01 15.2 0.3 0.021 14.2 0.2 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein DEAD PF00270.24 gi|57641134|ref|YP_183612.1| - 0.016 14.7 0.2 0.093 12.2 0.0 2.1 2 0 0 2 2 2 0 DEAD/DEAH box helicase UPF0079 PF02367.12 gi|57641134|ref|YP_183612.1| - 0.016 14.8 0.2 0.037 13.6 0.1 1.5 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_25 PF13481.1 gi|57641134|ref|YP_183612.1| - 0.018 14.4 0.0 0.045 13.1 0.0 1.7 1 0 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|57641134|ref|YP_183612.1| - 0.025 14.2 0.1 0.057 13.0 0.0 1.6 1 0 0 1 1 1 0 NACHT domain RNA_helicase PF00910.17 gi|57641134|ref|YP_183612.1| - 0.026 14.7 0.0 0.05 13.7 0.0 1.5 1 0 0 1 1 1 0 RNA helicase Bac_DnaA PF00308.13 gi|57641134|ref|YP_183612.1| - 0.051 13.2 0.2 0.47 10.0 0.1 2.2 2 0 0 2 2 2 0 Bacterial dnaA protein T2SE PF00437.15 gi|57641134|ref|YP_183612.1| - 0.057 12.3 4.8 0.1 11.4 0.3 2.6 2 1 1 3 3 3 0 Type II/IV secretion system protein AAA_29 PF13555.1 gi|57641134|ref|YP_183612.1| - 0.065 12.7 0.3 0.14 11.6 0.2 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain Cas_Cas2CT1978 PF09707.5 gi|57641134|ref|YP_183612.1| - 0.093 12.6 0.0 0.25 11.2 0.0 1.7 1 0 0 1 1 1 0 CRISPR-associated protein (Cas_Cas2CT1978) ATP-synt_ab PF00006.20 gi|57641134|ref|YP_183612.1| - 0.16 11.4 0.4 0.43 10.0 0.3 1.7 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain PIN_4 PF13638.1 gi|57641137|ref|YP_183615.1| - 1.9e-05 24.7 0.0 2.9e-05 24.1 0.0 1.3 1 0 0 1 1 1 1 PIN domain DUF1887 PF09002.6 gi|57641138|ref|YP_183616.1| - 3.9e-06 25.5 0.0 4.5e-06 25.3 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1887) Diphthamide_syn PF01866.12 gi|57641138|ref|YP_183616.1| - 0.0021 17.3 0.0 0.0025 17.1 0.0 1.1 1 0 0 1 1 1 1 Putative diphthamide synthesis protein Cas_Cas02710 PF09670.5 gi|57641138|ref|YP_183616.1| - 0.013 14.2 0.0 0.015 13.9 0.0 1.0 1 0 0 1 1 1 0 CRISPR-associated protein (Cas_Cas02710) IRF-2BP1_2 PF11261.3 gi|57641138|ref|YP_183616.1| - 0.037 13.4 0.0 0.088 12.2 0.0 1.6 1 0 0 1 1 1 0 Interferon regulatory factor 2-binding protein zinc finger DUF2284 PF10050.4 gi|57641139|ref|YP_183617.1| - 2e-45 154.3 0.1 2.4e-45 154.0 0.1 1.0 1 0 0 1 1 1 1 Predicted metal-binding protein (DUF2284) PBP PF01161.15 gi|57641140|ref|YP_183618.1| - 5.5e-38 130.0 0.0 6.5e-38 129.8 0.0 1.1 1 0 0 1 1 1 1 Phosphatidylethanolamine-binding protein PQ-loop PF04193.9 gi|57641141|ref|YP_183619.1| - 0.00068 19.1 6.0 0.0008 18.9 1.4 2.1 1 1 1 2 2 2 2 PQ loop repeat LAB_N PF07578.6 gi|57641141|ref|YP_183619.1| - 0.014 15.3 3.2 0.02 14.8 2.2 1.3 1 1 0 1 1 1 0 Lipid A Biosynthesis N-terminal domain 7tm_7 PF08395.7 gi|57641141|ref|YP_183619.1| - 0.022 13.8 1.2 0.023 13.7 0.8 1.0 1 0 0 1 1 1 0 7tm Chemosensory receptor P5-ATPase PF12409.3 gi|57641141|ref|YP_183619.1| - 0.033 14.0 0.9 0.041 13.7 0.3 1.3 1 1 0 1 1 1 0 P5-type ATPase cation transporter DUF1145 PF06611.7 gi|57641141|ref|YP_183619.1| - 5.2 6.7 9.3 1.6 8.3 1.0 2.5 2 1 1 3 3 3 0 Protein of unknown function (DUF1145) TPR_19 PF14559.1 gi|57641142|ref|YP_183620.1| - 3.5e-05 24.0 1.8 0.057 13.7 0.4 2.9 2 1 1 3 3 3 3 Tetratricopeptide repeat TPR_2 PF07719.12 gi|57641142|ref|YP_183620.1| - 0.038 13.9 1.0 30 4.8 0.0 3.9 4 0 0 4 4 4 0 Tetratricopeptide repeat PPR_3 PF13812.1 gi|57641142|ref|YP_183620.1| - 0.046 13.9 0.0 7.8 7.0 0.0 3.3 3 1 0 3 3 3 0 Pentatricopeptide repeat domain SgrR_N PF12793.2 gi|57641142|ref|YP_183620.1| - 0.051 13.5 0.7 3.6 7.6 0.1 2.7 2 1 1 3 3 3 0 Sugar transport-related sRNA regulator N-term Phage_holin_T PF11031.3 gi|57641142|ref|YP_183620.1| - 0.096 11.8 0.0 0.15 11.1 0.0 1.2 1 0 0 1 1 1 0 Bacteriophage T holin TPR_4 PF07721.9 gi|57641142|ref|YP_183620.1| - 0.15 12.6 0.3 19 6.0 0.0 3.3 3 0 0 3 3 3 0 Tetratricopeptide repeat PPR_1 PF12854.2 gi|57641142|ref|YP_183620.1| - 0.18 11.2 0.4 16 5.1 0.0 3.1 3 0 0 3 3 3 0 PPR repeat Glutaredoxin PF00462.19 gi|57641143|ref|YP_183621.1| - 3.4e-06 26.9 0.0 1.6e-05 24.7 0.0 2.0 2 0 0 2 2 2 1 Glutaredoxin Thioredoxin_2 PF13098.1 gi|57641143|ref|YP_183621.1| - 0.0052 16.9 1.4 0.22 11.7 1.0 2.8 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin PF00085.15 gi|57641143|ref|YP_183621.1| - 0.089 12.4 0.0 0.2 11.3 0.0 1.6 1 1 0 1 1 1 0 Thioredoxin Thioredoxin_3 PF13192.1 gi|57641143|ref|YP_183621.1| - 0.14 11.9 0.0 0.69 9.7 0.0 2.0 1 1 1 2 2 2 0 Thioredoxin domain DsbD PF02683.10 gi|57641144|ref|YP_183622.1| - 3.6e-33 114.9 21.5 3.6e-33 114.9 14.9 1.4 2 0 0 2 2 2 1 Cytochrome C biogenesis protein transmembrane region HTH_AsnC-type PF13404.1 gi|57641145|ref|YP_183623.1| - 5.8e-18 64.1 1.9 1e-17 63.3 1.3 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.1 gi|57641145|ref|YP_183623.1| - 2e-17 62.2 0.5 5.9e-17 60.7 0.2 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding AsnC_trans_reg PF01037.16 gi|57641145|ref|YP_183623.1| - 6.7e-17 60.9 0.3 1.5e-16 59.8 0.0 1.7 2 0 0 2 2 2 1 AsnC family HTH_20 PF12840.2 gi|57641145|ref|YP_183623.1| - 1.2e-06 28.2 0.1 3e-06 26.9 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|57641145|ref|YP_183623.1| - 1.2e-06 27.9 0.0 3.1e-06 26.6 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|57641145|ref|YP_183623.1| - 1.6e-06 27.7 1.3 2.9e-06 26.8 0.3 1.9 2 1 0 2 2 2 1 MarR family TrmB PF01978.14 gi|57641145|ref|YP_183623.1| - 1.7e-06 27.6 0.1 5.7e-06 25.9 0.0 1.8 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|57641145|ref|YP_183623.1| - 1.8e-06 27.5 0.0 8.7e-06 25.3 0.0 2.0 2 0 0 2 2 2 1 MarR family HTH_23 PF13384.1 gi|57641145|ref|YP_183623.1| - 4.2e-06 26.2 0.3 9.1e-06 25.1 0.2 1.5 1 0 0 1 1 1 1 Homeodomain-like domain Sigma70_r4_2 PF08281.7 gi|57641145|ref|YP_183623.1| - 1.4e-05 24.4 0.5 3.8e-05 23.0 0.1 1.9 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_11 PF08279.7 gi|57641145|ref|YP_183623.1| - 2.1e-05 24.0 0.5 0.00019 21.0 0.1 2.4 2 1 0 2 2 2 1 HTH domain Sigma70_r4 PF04545.11 gi|57641145|ref|YP_183623.1| - 4.5e-05 22.6 1.1 9.4e-05 21.6 0.8 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 FeoC PF09012.5 gi|57641145|ref|YP_183623.1| - 4.7e-05 23.0 0.0 0.0001 21.9 0.0 1.5 1 0 0 1 1 1 1 FeoC like transcriptional regulator Penicillinase_R PF03965.11 gi|57641145|ref|YP_183623.1| - 0.0002 21.4 0.0 0.00051 20.1 0.0 1.6 2 0 0 2 2 1 1 Penicillinase repressor CENP-B_N PF04218.8 gi|57641145|ref|YP_183623.1| - 0.00031 20.1 0.0 0.00066 19.0 0.0 1.5 1 0 0 1 1 1 1 CENP-B N-terminal DNA-binding domain Fe_dep_repress PF01325.14 gi|57641145|ref|YP_183623.1| - 0.00042 20.1 0.1 0.0016 18.3 0.0 1.9 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_28 PF13518.1 gi|57641145|ref|YP_183623.1| - 0.00047 20.1 0.0 0.00083 19.3 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_38 PF13936.1 gi|57641145|ref|YP_183623.1| - 0.00059 19.3 0.4 0.0012 18.3 0.2 1.7 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_DeoR PF08220.7 gi|57641145|ref|YP_183623.1| - 0.00093 18.6 0.6 0.0063 16.0 0.1 2.3 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain HTH_27 PF13463.1 gi|57641145|ref|YP_183623.1| - 0.0011 19.2 0.0 0.0026 18.0 0.0 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_Tnp_ISL3 PF13542.1 gi|57641145|ref|YP_183623.1| - 0.0046 16.0 0.1 0.008 15.3 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 HTH_5 PF01022.15 gi|57641145|ref|YP_183623.1| - 0.0077 15.8 0.0 0.013 15.1 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HxlR PF01638.12 gi|57641145|ref|YP_183623.1| - 0.01 15.4 0.1 0.031 13.9 0.0 1.7 2 0 0 2 2 2 0 HxlR-like helix-turn-helix LexA_DNA_bind PF01726.11 gi|57641145|ref|YP_183623.1| - 0.012 15.1 0.1 0.025 14.1 0.0 1.6 1 0 0 1 1 1 0 LexA DNA binding domain DUF977 PF06163.6 gi|57641145|ref|YP_183623.1| - 0.021 14.5 0.4 0.5 10.1 0.1 2.1 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF977) Rrf2 PF02082.15 gi|57641145|ref|YP_183623.1| - 0.023 14.7 0.0 0.041 14.0 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator ACT_4 PF13291.1 gi|57641145|ref|YP_183623.1| - 0.026 14.8 0.1 0.11 12.8 0.0 2.0 1 1 1 2 2 2 0 ACT domain DUF742 PF05331.6 gi|57641145|ref|YP_183623.1| - 0.034 13.7 0.0 0.069 12.7 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF742) EF1_GNE PF00736.14 gi|57641145|ref|YP_183623.1| - 0.043 13.5 0.2 0.1 12.2 0.1 1.6 2 0 0 2 2 2 0 EF-1 guanine nucleotide exchange domain HTH_36 PF13730.1 gi|57641145|ref|YP_183623.1| - 0.044 13.9 0.0 0.09 12.9 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain PaaX PF07848.7 gi|57641145|ref|YP_183623.1| - 0.053 13.5 0.2 0.2 11.6 0.1 2.0 1 1 1 2 2 2 0 PaaX-like protein EAP30 PF04157.11 gi|57641145|ref|YP_183623.1| - 0.059 12.5 0.0 0.13 11.4 0.0 1.5 1 0 0 1 1 1 0 EAP30/Vps36 family HTH_29 PF13551.1 gi|57641145|ref|YP_183623.1| - 0.06 13.4 0.0 0.12 12.5 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn helix RPA_C PF08784.6 gi|57641145|ref|YP_183623.1| - 0.066 13.6 0.2 0.23 11.9 0.0 2.0 3 0 0 3 3 1 0 Replication protein A C terminal DUF4423 PF14394.1 gi|57641145|ref|YP_183623.1| - 0.11 12.0 0.0 0.27 10.7 0.0 1.7 2 0 0 2 2 1 0 Domain of unknown function (DUF4423) Aminotran_3 PF00202.16 gi|57641146|ref|YP_183624.1| - 5e-97 324.7 0.0 6.4e-97 324.4 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.16 gi|57641146|ref|YP_183624.1| - 0.00016 20.7 0.0 0.00026 20.0 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class I and II Xan_ur_permease PF00860.15 gi|57641147|ref|YP_183625.1| - 2.4e-96 322.6 44.9 2.8e-96 322.3 31.1 1.1 1 0 0 1 1 1 1 Permease family DUF996 PF06195.8 gi|57641148|ref|YP_183626.1| - 1.5e-36 125.4 23.6 2.3e-36 124.8 16.4 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF996) DUF3112 PF11309.3 gi|57641148|ref|YP_183626.1| - 0.00058 19.6 5.5 0.00058 19.6 3.8 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF3112) DUF2975 PF11188.3 gi|57641148|ref|YP_183626.1| - 0.016 14.9 24.8 0.047 13.4 10.3 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF2975) Anoctamin PF04547.7 gi|57641148|ref|YP_183626.1| - 0.87 8.1 9.6 0.24 9.9 3.6 1.9 1 1 1 2 2 2 0 Calcium-activated chloride channel SieB PF14163.1 gi|57641148|ref|YP_183626.1| - 1.1 8.7 8.4 1.1 8.8 2.8 2.2 2 0 0 2 2 2 0 Superinfection exclusion protein B DUF898 PF05987.8 gi|57641148|ref|YP_183626.1| - 1.6 7.5 20.8 0.18 10.6 11.4 1.5 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF898) Cation_efflux PF01545.16 gi|57641148|ref|YP_183626.1| - 1.7 7.6 17.1 2.9 6.8 11.8 1.4 1 1 0 1 1 1 0 Cation efflux family FAM176 PF14851.1 gi|57641148|ref|YP_183626.1| - 2.1 8.0 12.6 3.7 7.2 1.7 2.7 2 1 1 3 3 3 0 FAM176 family zf-DHHC PF01529.15 gi|57641148|ref|YP_183626.1| - 3.6 6.9 17.8 1 8.7 5.4 2.1 1 1 1 2 2 2 0 DHHC palmitoyltransferase Fer4 PF00037.22 gi|57641149|ref|YP_183627.1| - 2.4e-14 52.2 10.4 8.5e-08 31.4 1.4 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|57641149|ref|YP_183627.1| - 1.3e-10 41.5 10.4 1.3e-10 41.5 7.2 1.7 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|57641149|ref|YP_183627.1| - 1.6e-09 37.4 4.2 3.9e-05 23.4 0.2 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|57641149|ref|YP_183627.1| - 5.4e-08 32.9 8.8 1.2e-07 31.8 6.1 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|57641149|ref|YP_183627.1| - 1e-07 31.6 9.1 3e-07 30.1 6.5 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|57641149|ref|YP_183627.1| - 1.8e-07 30.6 10.9 0.0012 18.5 2.2 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|57641149|ref|YP_183627.1| - 1.9e-07 31.7 15.2 4.7e-05 24.0 6.3 2.3 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_18 PF13746.1 gi|57641149|ref|YP_183627.1| - 6.3e-07 29.7 4.2 0.0036 17.6 0.0 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|57641149|ref|YP_183627.1| - 4e-06 26.7 7.1 7.4e-06 25.8 4.9 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|57641149|ref|YP_183627.1| - 1.2e-05 24.9 13.4 0.00026 20.7 1.3 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|57641149|ref|YP_183627.1| - 0.00064 20.0 8.8 0.12 12.7 0.7 2.4 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|57641149|ref|YP_183627.1| - 0.0018 18.7 7.0 0.17 12.4 0.6 2.3 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|57641149|ref|YP_183627.1| - 0.0039 17.6 17.5 0.0059 17.0 2.8 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_4 PF12800.2 gi|57641149|ref|YP_183627.1| - 0.0071 16.5 14.3 0.12 12.7 2.5 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_11 PF13247.1 gi|57641149|ref|YP_183627.1| - 0.012 15.5 1.5 0.018 14.8 1.0 1.3 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|57641149|ref|YP_183627.1| - 0.13 12.7 8.6 1.4 9.3 0.9 2.4 2 0 0 2 2 2 0 4Fe-4S single cluster domain Complex1_49kDa PF00346.14 gi|57641150|ref|YP_183628.1| - 1.6e-57 194.5 0.0 2e-40 138.5 0.1 2.1 1 1 1 2 2 2 2 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Complex1_30kDa PF00329.14 gi|57641151|ref|YP_183629.1| - 8e-31 106.3 0.2 1.1e-30 105.8 0.1 1.2 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit DUF3354 PF11834.3 gi|57641151|ref|YP_183629.1| - 0.15 11.7 0.0 0.36 10.4 0.0 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF3354) Oxidored_q6 PF01058.17 gi|57641152|ref|YP_183630.1| - 1.9e-19 69.5 0.0 2.9e-19 68.9 0.0 1.3 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit NADHdh PF00146.16 gi|57641153|ref|YP_183631.1| - 1.1e-34 119.8 15.0 1.3e-34 119.6 10.4 1.0 1 0 0 1 1 1 1 NADH dehydrogenase Oxidored_q1 PF00361.15 gi|57641154|ref|YP_183632.1| - 5.2e-49 166.9 24.9 5.2e-49 166.9 17.3 2.2 3 0 0 3 3 3 1 NADH-Ubiquinone/plastoquinone (complex I), various chains EBV-NA3 PF05009.7 gi|57641154|ref|YP_183632.1| - 0.24 10.6 0.9 0.41 9.8 0.6 1.3 1 0 0 1 1 1 0 Epstein-Barr virus nuclear antigen 3 (EBNA-3) Oxidored_q1 PF00361.15 gi|57641155|ref|YP_183633.1| - 8.6e-58 195.7 16.9 8.6e-58 195.7 11.7 3.0 2 1 1 3 3 3 1 NADH-Ubiquinone/plastoquinone (complex I), various chains NADHdeh_related PF10125.4 gi|57641155|ref|YP_183633.1| - 4.7e-07 29.1 13.5 4.7e-07 29.1 9.4 2.3 2 0 0 2 2 2 1 NADH dehydrogenase I, subunit N related protein DUF4605 PF15378.1 gi|57641155|ref|YP_183633.1| - 0.0082 15.8 0.8 0.0082 15.8 0.6 3.9 5 1 0 5 5 5 1 Domain of unknown function (DUF4605) DUF1517 PF07466.6 gi|57641155|ref|YP_183633.1| - 9 5.1 9.6 0.84 8.5 0.2 2.9 2 1 1 3 3 3 0 Protein of unknown function (DUF1517) Oxidored_q2 PF00420.19 gi|57641156|ref|YP_183634.1| - 1.7e-29 101.2 2.5 1.9e-29 101.1 1.8 1.0 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DUF2108 PF09881.4 gi|57641156|ref|YP_183634.1| - 9e-05 22.2 3.7 9e-05 22.2 2.6 1.8 2 0 0 2 2 2 1 Predicted membrane protein (DUF2108) DUF4418 PF14387.1 gi|57641156|ref|YP_183634.1| - 2.8 7.7 6.3 1.2 8.9 1.3 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4418) DUF872 PF05915.7 gi|57641156|ref|YP_183634.1| - 9.7 6.0 6.2 0.76 9.6 0.6 1.8 2 1 1 3 3 3 0 Eukaryotic protein of unknown function (DUF872) MnhB PF04039.8 gi|57641157|ref|YP_183635.1| - 1.5e-31 109.0 14.8 1.5e-31 109.0 10.3 2.3 2 1 0 2 2 2 1 Domain related to MnhB subunit of Na+/H+ antiporter PAP2 PF01569.16 gi|57641157|ref|YP_183635.1| - 0.0092 15.6 8.2 0.027 14.1 4.8 2.1 1 1 0 1 1 1 1 PAP2 superfamily DUF2105 PF09878.4 gi|57641157|ref|YP_183635.1| - 0.083 12.4 4.6 0.14 11.7 3.2 1.5 1 0 0 1 1 1 0 Predicted membrane protein (DUF2105) MerC PF03203.9 gi|57641157|ref|YP_183635.1| - 0.72 10.2 5.4 16 5.8 3.7 2.6 1 1 0 1 1 1 0 MerC mercury resistance protein DUF2269 PF10027.4 gi|57641157|ref|YP_183635.1| - 3.7 7.3 9.5 7 6.4 0.1 3.0 3 0 0 3 3 3 0 Predicted integral membrane protein (DUF2269) DUF4040 PF13244.1 gi|57641158|ref|YP_183636.1| - 5.8e-20 71.0 9.6 7.3e-20 70.7 6.7 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4040) DUF1129 PF06570.6 gi|57641158|ref|YP_183636.1| - 0.031 13.5 0.4 0.056 12.7 0.0 1.5 1 1 1 2 2 2 0 Protein of unknown function (DUF1129) Abhydrolase_9_N PF15420.1 gi|57641158|ref|YP_183636.1| - 0.068 12.9 2.4 0.091 12.4 1.6 1.2 1 0 0 1 1 1 0 Alpha/beta-hydrolase family N-terminus Jiraiya PF15038.1 gi|57641158|ref|YP_183636.1| - 0.08 12.3 1.3 0.088 12.2 0.1 1.5 1 1 0 1 1 1 0 Jiraiya DUF3093 PF11292.3 gi|57641158|ref|YP_183636.1| - 0.09 12.5 1.6 0.11 12.3 1.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3093) TspO_MBR PF03073.10 gi|57641158|ref|YP_183636.1| - 0.1 12.1 4.8 0.15 11.5 3.3 1.3 1 0 0 1 1 1 0 TspO/MBR family DUF3649 PF12365.3 gi|57641158|ref|YP_183636.1| - 1 8.9 5.8 0.26 10.8 1.3 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF3649) DUF2721 PF11026.3 gi|57641158|ref|YP_183636.1| - 1.8 8.2 11.1 0.6 9.7 5.6 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF2721) Spore_YhaL PF14147.1 gi|57641158|ref|YP_183636.1| - 2.2 7.7 5.4 4.7 6.7 0.2 2.5 2 1 0 2 2 2 0 Sporulation protein YhaL PhaG_MnhG_YufB PF03334.9 gi|57641159|ref|YP_183637.1| - 1.3e-26 92.4 3.8 1.6e-26 92.1 2.6 1.1 1 0 0 1 1 1 1 Na+/H+ antiporter subunit MrpF_PhaF PF04066.8 gi|57641160|ref|YP_183638.1| - 5.2e-20 71.4 6.6 5.2e-20 71.4 4.6 2.0 2 0 0 2 2 2 1 Multiple resistance and pH regulation protein F (MrpF / PhaF) Polysacc_synt_3 PF13440.1 gi|57641160|ref|YP_183638.1| - 0.44 9.9 9.1 0.53 9.6 6.3 1.1 1 0 0 1 1 1 0 Polysaccharide biosynthesis protein EmrE PF13536.1 gi|57641160|ref|YP_183638.1| - 1.6 8.9 7.2 2 8.6 5.0 1.2 1 0 0 1 1 1 0 Multidrug resistance efflux transporter PAP2 PF01569.16 gi|57641160|ref|YP_183638.1| - 2.8 7.6 7.9 0.39 10.4 2.3 1.7 2 0 0 2 2 2 0 PAP2 superfamily MNHE PF01899.11 gi|57641161|ref|YP_183639.1| - 6.6e-44 149.2 1.2 9e-44 148.8 0.9 1.2 1 0 0 1 1 1 1 Na+/H+ ion antiporter subunit ACT PF01842.20 gi|57641162|ref|YP_183640.1| - 4.1e-08 32.5 0.1 6.3e-08 31.9 0.1 1.3 1 0 0 1 1 1 1 ACT domain ACT_4 PF13291.1 gi|57641162|ref|YP_183640.1| - 0.0064 16.8 0.1 0.015 15.6 0.1 1.6 1 1 0 1 1 1 1 ACT domain ACT_7 PF13840.1 gi|57641162|ref|YP_183640.1| - 0.0094 15.4 0.0 0.018 14.5 0.0 1.4 1 0 0 1 1 1 1 ACT domain Radical_SAM PF04055.16 gi|57641163|ref|YP_183641.1| - 4.8e-26 91.8 0.0 1.2e-25 90.6 0.0 1.6 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|57641163|ref|YP_183641.1| - 0.00024 21.1 0.0 0.00053 19.9 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain HHH_5 PF14520.1 gi|57641163|ref|YP_183641.1| - 0.016 15.3 0.0 0.12 12.5 0.0 2.5 2 1 0 2 2 2 0 Helix-hairpin-helix domain Fer4_12 PF13353.1 gi|57641163|ref|YP_183641.1| - 0.13 12.4 0.1 0.35 10.9 0.1 1.7 1 1 0 1 1 1 0 4Fe-4S single cluster domain DUF948 PF06103.6 gi|57641164|ref|YP_183642.1| - 0.066 13.0 1.0 10 6.0 0.0 2.3 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF948) 4HB_MCP_1 PF12729.2 gi|57641164|ref|YP_183642.1| - 1 8.6 6.4 0.16 11.3 0.3 2.1 2 0 0 2 2 2 0 Four helix bundle sensory module for signal transduction ATP-synt_8 PF00895.15 gi|57641164|ref|YP_183642.1| - 8.7 6.6 6.6 24 5.2 0.2 2.7 3 0 0 3 3 3 0 ATP synthase protein 8 Epimerase_2 PF02350.14 gi|57641165|ref|YP_183643.1| - 9.8e-117 389.5 0.0 1.2e-116 389.2 0.0 1.0 1 0 0 1 1 1 1 UDP-N-acetylglucosamine 2-epimerase DUF354 PF04007.7 gi|57641165|ref|YP_183643.1| - 9.1e-05 21.4 0.2 0.00012 21.0 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF354) Glyco_trans_4_2 PF13477.1 gi|57641165|ref|YP_183643.1| - 0.09 12.6 0.0 0.15 11.9 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase 4-like UDPG_MGDP_dh_N PF03721.9 gi|57641166|ref|YP_183644.1| - 2.7e-54 183.3 0.1 5.2e-54 182.4 0.1 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh_C PF03720.10 gi|57641166|ref|YP_183644.1| - 7.4e-26 90.3 0.2 4.7e-24 84.5 0.0 2.7 2 1 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain UDPG_MGDP_dh PF00984.14 gi|57641166|ref|YP_183644.1| - 3e-25 88.2 0.0 6.4e-24 83.9 0.0 2.4 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain NAD_binding_2 PF03446.10 gi|57641166|ref|YP_183644.1| - 2e-08 34.2 0.0 6e-08 32.6 0.0 1.8 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_Gly3P_dh_N PF01210.18 gi|57641166|ref|YP_183644.1| - 1.6e-06 27.9 0.0 0.00013 21.6 0.0 2.4 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 3HCDH_N PF02737.13 gi|57641166|ref|YP_183644.1| - 1.6e-05 24.6 0.0 3.5e-05 23.5 0.0 1.6 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.16 gi|57641166|ref|YP_183644.1| - 0.00066 19.2 0.0 0.0017 17.9 0.0 1.7 1 1 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox PF00070.22 gi|57641166|ref|YP_183644.1| - 0.00083 19.7 1.6 0.0018 18.6 0.1 2.4 3 1 1 4 4 2 1 Pyridine nucleotide-disulphide oxidoreductase 2-Hacid_dh_C PF02826.14 gi|57641166|ref|YP_183644.1| - 0.0014 17.8 0.0 0.021 14.0 0.0 2.3 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DAO PF01266.19 gi|57641166|ref|YP_183644.1| - 0.0072 15.2 0.0 0.0098 14.8 0.0 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase ApbA PF02558.11 gi|57641166|ref|YP_183644.1| - 0.03 13.7 0.0 0.066 12.6 0.0 1.6 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Methyltransf_18 PF12847.2 gi|57641166|ref|YP_183644.1| - 0.055 14.0 0.0 0.23 12.0 0.0 2.0 2 0 0 2 2 2 0 Methyltransferase domain ThiF PF00899.16 gi|57641166|ref|YP_183644.1| - 0.1 12.4 0.1 2.8 7.7 0.0 2.4 2 0 0 2 2 2 0 ThiF family FAD_binding_3 PF01494.14 gi|57641166|ref|YP_183644.1| - 0.1 11.6 0.0 0.15 11.0 0.0 1.2 1 0 0 1 1 1 0 FAD binding domain TrkA_N PF02254.13 gi|57641166|ref|YP_183644.1| - 0.15 12.0 0.6 2 8.4 0.0 2.6 3 0 0 3 3 3 0 TrkA-N domain DUF354 PF04007.7 gi|57641167|ref|YP_183645.1| - 2.4e-132 440.8 0.0 2.7e-132 440.6 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF354) Epimerase_2 PF02350.14 gi|57641167|ref|YP_183645.1| - 0.0051 15.6 0.0 0.0087 14.8 0.0 1.3 1 0 0 1 1 1 1 UDP-N-acetylglucosamine 2-epimerase DUF95 PF01944.12 gi|57641168|ref|YP_183646.1| - 2.7e-38 131.3 12.0 3.1e-38 131.1 8.3 1.0 1 0 0 1 1 1 1 Integral membrane protein DUF95 DUF1129 PF06570.6 gi|57641168|ref|YP_183646.1| - 0.45 9.7 2.7 0.78 9.0 0.1 2.1 2 1 0 2 2 2 0 Protein of unknown function (DUF1129) Lip_prot_lig_C PF10437.4 gi|57641169|ref|YP_183647.1| - 4.2e-07 29.5 0.1 5.6e-07 29.1 0.1 1.3 1 1 0 1 1 1 1 Bacterial lipoate protein ligase C-terminus tRNA-synt_1d PF00750.14 gi|57641170|ref|YP_183648.1| - 1.4e-51 175.3 0.1 1.2e-33 116.3 0.1 2.1 2 0 0 2 2 2 2 tRNA synthetases class I (R) DALR_1 PF05746.10 gi|57641170|ref|YP_183648.1| - 1.1e-37 128.5 0.1 1.1e-37 128.5 0.1 2.8 3 0 0 3 3 3 1 DALR anticodon binding domain Arg_tRNA_synt_N PF03485.11 gi|57641170|ref|YP_183648.1| - 3.6e-13 49.8 0.1 2.4e-12 47.1 0.0 2.5 3 0 0 3 3 3 1 Arginyl tRNA synthetase N terminal domain tRNA-synt_1e PF01406.14 gi|57641170|ref|YP_183648.1| - 0.00011 21.5 0.0 0.00019 20.6 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1 PF00133.17 gi|57641170|ref|YP_183648.1| - 0.0046 15.0 0.0 0.0091 14.0 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) RecX PF02631.11 gi|57641170|ref|YP_183648.1| - 0.042 14.0 1.2 0.1 12.8 0.1 2.2 2 0 0 2 2 2 0 RecX family TAFH PF07531.9 gi|57641170|ref|YP_183648.1| - 0.096 12.3 2.2 0.27 10.9 0.4 2.4 2 0 0 2 2 2 0 NHR1 homology to TAF Arch_ATPase PF01637.13 gi|57641171|ref|YP_183649.1| - 4.8e-43 147.5 0.0 7.8e-43 146.8 0.0 1.3 1 0 0 1 1 1 1 Archaeal ATPase AAA_14 PF13173.1 gi|57641171|ref|YP_183649.1| - 9.4e-10 38.4 0.0 1.3e-07 31.5 0.0 2.6 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|57641171|ref|YP_183649.1| - 3.8e-05 23.8 0.0 6.9e-05 23.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|57641171|ref|YP_183649.1| - 0.0021 18.0 0.0 0.012 15.5 0.0 2.0 1 1 0 1 1 1 1 AAA ATPase domain TrmB PF01978.14 gi|57641171|ref|YP_183649.1| - 0.056 13.1 0.0 0.23 11.1 0.0 2.1 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.1 gi|57641171|ref|YP_183649.1| - 0.1 12.3 0.0 0.32 10.8 0.0 1.8 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain DHDPS PF00701.17 gi|57641172|ref|YP_183650.1| - 4.9e-60 202.5 0.0 5.4e-60 202.4 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family Not3 PF04065.10 gi|57641173|ref|YP_183651.1| - 5.2e-05 22.6 3.4 5.2e-05 22.6 2.3 1.0 1 0 0 1 1 1 1 Not1 N-terminal domain, CCR4-Not complex component CheZ PF04344.8 gi|57641173|ref|YP_183651.1| - 0.04 13.5 0.4 0.046 13.3 0.3 1.0 1 0 0 1 1 1 0 Chemotaxis phosphatase, CheZ DUF1957 PF09210.6 gi|57641173|ref|YP_183651.1| - 0.1 12.6 0.1 0.13 12.3 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1957) MRP-S26 PF14943.1 gi|57641173|ref|YP_183651.1| - 0.13 11.8 4.2 0.15 11.5 2.9 1.2 1 1 0 1 1 1 0 Mitochondrial ribosome subunit S26 eRF1_2 PF03464.10 gi|57641174|ref|YP_183652.1| - 2.4e-44 150.8 0.0 4.7e-44 149.9 0.0 1.5 1 0 0 1 1 1 1 eRF1 domain 2 eRF1_3 PF03465.10 gi|57641174|ref|YP_183652.1| - 2.6e-36 124.3 0.5 7.7e-36 122.8 0.3 1.9 1 0 0 1 1 1 1 eRF1 domain 3 eRF1_1 PF03463.10 gi|57641174|ref|YP_183652.1| - 2.9e-21 75.4 0.0 5.4e-21 74.5 0.0 1.5 1 0 0 1 1 1 1 eRF1 domain 1 Lar_restr_allev PF14354.1 gi|57641174|ref|YP_183652.1| - 0.0039 17.4 0.1 0.59 10.4 0.0 2.4 2 0 0 2 2 2 1 Restriction alleviation protein Lar HypA PF01155.14 gi|57641174|ref|YP_183652.1| - 0.01 15.5 0.1 0.02 14.5 0.1 1.6 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Zn-ribbon_8 PF09723.5 gi|57641174|ref|YP_183652.1| - 0.067 13.1 1.9 0.57 10.1 1.3 2.4 1 1 0 1 1 1 0 Zinc ribbon domain zinc_ribbon_6 PF14599.1 gi|57641174|ref|YP_183652.1| - 0.089 12.5 0.3 0.2 11.4 0.2 1.5 1 0 0 1 1 1 0 Zinc-ribbon DUF728 PF05304.7 gi|57641174|ref|YP_183652.1| - 0.1 12.7 0.5 0.25 11.5 0.1 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF728) FMN_red PF03358.10 gi|57641174|ref|YP_183652.1| - 0.11 11.9 0.0 9.9 5.6 0.0 2.4 2 0 0 2 2 2 0 NADPH-dependent FMN reductase TFIIS_C PF01096.13 gi|57641174|ref|YP_183652.1| - 0.57 9.8 2.6 3.4 7.3 0.2 2.4 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-ribbon_3 PF13248.1 gi|57641174|ref|YP_183652.1| - 1.8 7.8 5.6 4.8 6.5 0.3 2.2 1 1 1 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|57641174|ref|YP_183652.1| - 2.7 7.6 5.2 4.2 6.9 0.5 2.3 2 0 0 2 2 2 0 zinc-ribbon domain BofA PF07441.6 gi|57641175|ref|YP_183653.1| - 7.6e-05 22.6 26.0 9.4e-05 22.3 18.0 1.1 1 0 0 1 1 1 1 SigmaK-factor processing regulatory protein BofA DUF3325 PF11804.3 gi|57641175|ref|YP_183653.1| - 2 8.4 9.2 2.7 7.9 6.4 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3325) Adaptin_N PF01602.15 gi|57641176|ref|YP_183654.1| - 3.3e-07 29.0 0.0 0.00061 18.2 0.0 2.0 1 1 1 2 2 2 2 Adaptin N terminal region HEAT_2 PF13646.1 gi|57641176|ref|YP_183654.1| - 5.7e-05 23.3 0.0 0.088 13.1 0.0 3.1 2 1 1 3 3 3 2 HEAT repeats Cnd1 PF12717.2 gi|57641176|ref|YP_183654.1| - 0.016 15.0 0.0 3.6 7.3 0.0 2.1 1 1 1 2 2 2 0 non-SMC mitotic condensation complex subunit 1 HEAT PF02985.17 gi|57641176|ref|YP_183654.1| - 0.031 14.3 0.0 13 6.1 0.0 3.1 3 0 0 3 3 3 0 HEAT repeat B56 PF01603.15 gi|57641176|ref|YP_183654.1| - 0.055 12.0 0.0 0.073 11.6 0.0 1.2 1 0 0 1 1 1 0 Protein phosphatase 2A regulatory B subunit (B56 family) V-ATPase_H_C PF11698.3 gi|57641176|ref|YP_183654.1| - 0.078 12.9 0.0 1.8 8.5 0.0 2.2 1 1 0 2 2 2 0 V-ATPase subunit H Spatacsin_C PF14649.1 gi|57641176|ref|YP_183654.1| - 0.085 11.7 0.1 0.14 11.0 0.1 1.2 1 0 0 1 1 1 0 Spatacsin C-terminus Arm PF00514.18 gi|57641176|ref|YP_183654.1| - 0.15 11.8 0.0 0.98 9.3 0.0 2.3 2 0 0 2 2 2 0 Armadillo/beta-catenin-like repeat PemK PF02452.12 gi|57641177|ref|YP_183655.1| - 9.7e-16 57.9 0.0 1.3e-15 57.5 0.0 1.2 1 0 0 1 1 1 1 PemK-like protein GlutR_dimer PF00745.15 gi|57641178|ref|YP_183656.1| - 0.12 12.2 2.9 2.4 8.1 0.4 2.5 1 1 1 2 2 2 0 Glutamyl-tRNAGlu reductase, dimerisation domain NEAT PF05031.7 gi|57641179|ref|YP_183657.1| - 0.025 14.5 0.9 5 7.1 0.2 2.1 1 1 1 2 2 2 0 Iron Transport-associated domain Class_IIIsignal PF04021.7 gi|57641179|ref|YP_183657.1| - 0.028 14.1 1.9 0.075 12.7 1.3 1.8 1 1 0 1 1 1 0 Class III signal peptide Class_IIIsignal PF04021.7 gi|57641180|ref|YP_183658.1| - 7.4e-09 35.0 2.5 1.1e-08 34.4 1.8 1.3 1 0 0 1 1 1 1 Class III signal peptide HTH_11 PF08279.7 gi|57641181|ref|YP_183659.1| - 0.00014 21.4 0.5 0.00035 20.1 0.0 1.9 3 0 0 3 3 3 1 HTH domain HTH_23 PF13384.1 gi|57641181|ref|YP_183659.1| - 0.0047 16.5 0.0 0.0084 15.7 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.1 gi|57641181|ref|YP_183659.1| - 0.016 15.1 0.0 0.032 14.2 0.0 1.6 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_8 PF02954.14 gi|57641181|ref|YP_183659.1| - 0.04 13.4 0.0 0.53 9.8 0.0 2.8 2 1 0 2 2 2 0 Bacterial regulatory protein, Fis family HTH_17 PF12728.2 gi|57641181|ref|YP_183659.1| - 0.046 13.9 0.0 0.096 12.9 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_10 PF04967.7 gi|57641181|ref|YP_183659.1| - 0.085 12.4 0.0 0.17 11.4 0.0 1.5 1 0 0 1 1 1 0 HTH DNA binding domain MerR PF00376.18 gi|57641181|ref|YP_183659.1| - 0.12 11.9 0.0 0.24 10.9 0.0 1.5 1 0 0 1 1 1 0 MerR family regulatory protein Peptidase_M50 PF02163.17 gi|57641182|ref|YP_183660.1| - 5.6e-17 61.3 9.2 1.8e-15 56.4 6.4 2.3 1 1 0 1 1 1 1 Peptidase family M50 Zn-ribbon_8 PF09723.5 gi|57641182|ref|YP_183660.1| - 0.0015 18.4 0.6 0.0027 17.6 0.4 1.4 1 0 0 1 1 1 1 Zinc ribbon domain zf-ribbon_3 PF13248.1 gi|57641182|ref|YP_183660.1| - 0.021 14.0 1.0 0.041 13.1 0.7 1.4 1 0 0 1 1 1 0 zinc-ribbon domain TFIIS_C PF01096.13 gi|57641182|ref|YP_183660.1| - 0.08 12.5 0.5 2.6 7.7 0.0 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-IS66 PF13005.2 gi|57641182|ref|YP_183660.1| - 0.086 12.8 0.7 0.44 10.5 0.0 2.3 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 zf-C4_Topoisom PF01396.14 gi|57641182|ref|YP_183660.1| - 0.12 11.8 0.2 0.23 10.9 0.1 1.4 1 0 0 1 1 1 0 Topoisomerase DNA binding C4 zinc finger DUF1451 PF07295.6 gi|57641182|ref|YP_183660.1| - 0.13 12.0 0.4 0.2 11.4 0.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1451) TF_Zn_Ribbon PF08271.7 gi|57641182|ref|YP_183660.1| - 0.2 10.9 2.2 9.1 5.6 2.3 2.1 1 1 1 2 2 2 0 TFIIB zinc-binding DUF1272 PF06906.6 gi|57641182|ref|YP_183660.1| - 0.21 11.4 0.4 0.39 10.6 0.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1272) zinc_ribbon_2 PF13240.1 gi|57641182|ref|YP_183660.1| - 0.29 10.6 1.4 0.59 9.6 1.0 1.5 1 0 0 1 1 1 0 zinc-ribbon domain A2L_zn_ribbon PF08792.5 gi|57641182|ref|YP_183660.1| - 0.29 10.6 0.7 6.1 6.4 0.0 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain DNA_RNApol_7kD PF03604.8 gi|57641182|ref|YP_183660.1| - 0.32 10.5 2.2 0.56 9.7 1.5 1.4 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit Vma12 PF11712.3 gi|57641182|ref|YP_183660.1| - 0.32 10.6 1.0 0.86 9.3 0.7 1.7 1 0 0 1 1 1 0 Endoplasmic reticulum-based factor for assembly of V-ATPase DUF126 PF01989.11 gi|57641183|ref|YP_183661.1| - 3e-37 126.1 0.3 5.2e-37 125.3 0.2 1.4 1 0 0 1 1 1 1 Protein of unknown function DUF126 PEP-utilizers PF00391.18 gi|57641183|ref|YP_183661.1| - 0.043 13.3 0.9 0.09 12.3 0.2 1.9 2 1 0 2 2 2 0 PEP-utilising enzyme, mobile domain DUF521 PF04412.8 gi|57641184|ref|YP_183662.1| - 9.5e-151 501.8 0.0 1.1e-150 501.6 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF521) LAGLIDADG_3 PF14528.1 gi|57641185|ref|YP_183663.1| - 4e-22 78.2 3.8 1.3e-16 60.5 0.4 2.4 2 0 0 2 2 2 2 LAGLIDADG-like domain LAGLIDADG_WhiA PF14527.1 gi|57641185|ref|YP_183663.1| - 0.0001 22.1 0.7 0.0027 17.5 0.0 2.9 3 0 0 3 3 3 1 WhiA LAGLIDADG-like domain HTH_28 PF13518.1 gi|57641185|ref|YP_183663.1| - 0.076 13.0 0.1 0.23 11.4 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_32 PF13565.1 gi|57641185|ref|YP_183663.1| - 0.079 13.7 0.1 0.079 13.7 0.1 2.1 2 0 0 2 2 2 0 Homeodomain-like domain Ribosomal_S13_N PF08069.7 gi|57641186|ref|YP_183664.1| - 3.2e-28 97.3 0.1 7.3e-28 96.1 0.1 1.6 1 0 0 1 1 1 1 Ribosomal S13/S15 N-terminal domain Ribosomal_S15 PF00312.17 gi|57641186|ref|YP_183664.1| - 1.7e-25 88.5 0.4 2.3e-25 88.1 0.3 1.2 1 0 0 1 1 1 1 Ribosomal protein S15 DUF1018 PF06252.7 gi|57641186|ref|YP_183664.1| - 0.066 13.7 0.0 0.25 11.8 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1018) MerR_1 PF13411.1 gi|57641186|ref|YP_183664.1| - 0.085 12.6 0.1 2.2 8.1 0.0 2.6 2 0 0 2 2 2 0 MerR HTH family regulatory protein DHHA1 PF02272.14 gi|57641187|ref|YP_183665.1| - 3.9e-19 68.1 0.4 1.1e-18 66.7 0.3 1.8 1 0 0 1 1 1 1 DHHA1 domain DHH PF01368.15 gi|57641187|ref|YP_183665.1| - 7.3e-12 45.1 0.1 1.4e-11 44.2 0.1 1.4 1 0 0 1 1 1 1 DHH family Pcc1 PF09341.5 gi|57641188|ref|YP_183666.1| - 0.0046 16.9 0.0 0.0048 16.9 0.0 1.2 1 0 0 1 1 1 1 Transcription factor Pcc1 Ribosomal_S3Ae PF01015.13 gi|57641189|ref|YP_183667.1| - 6.1e-76 254.1 2.4 7e-76 253.8 1.7 1.0 1 0 0 1 1 1 1 Ribosomal S3Ae family RHH_3 PF12651.2 gi|57641190|ref|YP_183668.1| - 0.0099 15.5 0.9 0.015 15.0 0.6 1.3 1 0 0 1 1 1 1 Ribbon-helix-helix domain FF PF01846.14 gi|57641190|ref|YP_183668.1| - 0.12 12.3 0.3 0.26 11.2 0.2 1.6 1 0 0 1 1 1 0 FF domain MinE PF03776.9 gi|57641190|ref|YP_183668.1| - 0.13 11.7 1.2 0.18 11.3 0.8 1.4 1 1 0 1 1 1 0 Septum formation topological specificity factor MinE PIN PF01850.16 gi|57641191|ref|YP_183669.1| - 1e-18 67.7 0.1 1.2e-18 67.6 0.1 1.0 1 0 0 1 1 1 1 PIN domain CobS_N PF12556.3 gi|57641191|ref|YP_183669.1| - 0.024 14.0 0.1 0.042 13.2 0.1 1.3 1 0 0 1 1 1 0 Cobaltochelatase CobS subunit N terminal DUF3301 PF11743.3 gi|57641191|ref|YP_183669.1| - 0.043 13.3 0.3 0.16 11.5 0.0 2.0 2 1 1 3 3 3 0 Protein of unknown function (DUF3301) SicP-binding PF09119.5 gi|57641191|ref|YP_183669.1| - 0.11 12.1 0.0 0.19 11.4 0.0 1.3 1 0 0 1 1 1 0 SicP binding SPOUT_MTase_2 PF14419.1 gi|57641192|ref|YP_183670.1| - 8.1e-89 295.3 0.5 1.4e-88 294.6 0.0 1.6 2 0 0 2 2 2 1 AF2226-like SPOUT RNA Methylase fused to THUMP THUMP PF02926.12 gi|57641192|ref|YP_183670.1| - 7.3e-30 103.7 4.2 1e-29 103.2 0.9 2.4 3 0 0 3 3 3 1 THUMP domain Methyltrn_RNA_4 PF09936.4 gi|57641192|ref|YP_183670.1| - 0.0091 15.5 0.0 0.041 13.3 0.0 1.9 2 0 0 2 2 2 1 SAM-dependent RNA methyltransferase Lyase_1 PF00206.15 gi|57641192|ref|YP_183670.1| - 0.0094 15.1 0.2 0.015 14.5 0.1 1.2 1 0 0 1 1 1 1 Lyase DUF92 PF01940.11 gi|57641193|ref|YP_183671.1| - 1.3e-67 227.3 13.6 1.6e-67 226.9 9.4 1.0 1 0 0 1 1 1 1 Integral membrane protein DUF92 Glug PF07581.7 gi|57641193|ref|YP_183671.1| - 0.072 13.3 2.9 3 8.2 0.1 2.9 2 0 0 2 2 2 0 The GLUG motif HTH_24 PF13412.1 gi|57641194|ref|YP_183672.1| - 2.3e-15 55.7 1.6 2.3e-15 55.7 1.1 1.9 3 0 0 3 3 2 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|57641194|ref|YP_183672.1| - 7.8e-13 47.7 1.2 1.5e-12 46.8 0.8 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_20 PF12840.2 gi|57641194|ref|YP_183672.1| - 4.5e-09 35.9 0.1 1e-08 34.8 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|57641194|ref|YP_183672.1| - 2.3e-07 30.3 0.0 4.7e-07 29.3 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.1 gi|57641194|ref|YP_183672.1| - 2.5e-07 30.3 0.0 5.4e-07 29.3 0.0 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain AsnC_trans_reg PF01037.16 gi|57641194|ref|YP_183672.1| - 4.7e-07 29.4 0.1 7.6e-07 28.7 0.0 1.4 1 0 0 1 1 1 1 AsnC family MarR PF01047.17 gi|57641194|ref|YP_183672.1| - 6.8e-07 28.8 0.3 1.4e-06 27.8 0.2 1.5 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.7 gi|57641194|ref|YP_183672.1| - 9.4e-06 25.1 1.3 2.6e-05 23.7 0.9 1.7 1 0 0 1 1 1 1 HTH domain HTH_5 PF01022.15 gi|57641194|ref|YP_183672.1| - 3e-05 23.5 0.3 6.9e-05 22.4 0.1 1.7 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_28 PF13518.1 gi|57641194|ref|YP_183672.1| - 6e-05 22.9 1.1 0.00025 20.9 0.1 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain Crp PF00325.15 gi|57641194|ref|YP_183672.1| - 6.6e-05 22.2 0.9 0.00013 21.3 0.6 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, crp family HTH_34 PF13601.1 gi|57641194|ref|YP_183672.1| - 7e-05 22.7 0.4 0.00022 21.1 0.1 1.9 2 0 0 2 2 2 1 Winged helix DNA-binding domain Sigma70_r4 PF04545.11 gi|57641194|ref|YP_183672.1| - 7.5e-05 21.9 0.1 0.00019 20.6 0.0 1.7 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_23 PF13384.1 gi|57641194|ref|YP_183672.1| - 7.8e-05 22.1 1.4 0.00014 21.4 0.2 1.9 2 0 0 2 2 2 1 Homeodomain-like domain TrmB PF01978.14 gi|57641194|ref|YP_183672.1| - 0.00021 20.9 0.7 0.0015 18.1 0.2 2.2 1 1 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_Mga PF08280.6 gi|57641194|ref|YP_183672.1| - 0.00052 19.7 0.1 0.0011 18.6 0.1 1.5 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain HTH_3 PF01381.17 gi|57641194|ref|YP_183672.1| - 0.0012 18.6 0.3 0.0026 17.5 0.2 1.6 1 0 0 1 1 1 1 Helix-turn-helix HTH_DeoR PF08220.7 gi|57641194|ref|YP_183672.1| - 0.0017 17.8 1.8 0.0028 17.1 0.6 1.8 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain EAP30 PF04157.11 gi|57641194|ref|YP_183672.1| - 0.0055 15.8 0.0 0.021 13.9 0.0 1.7 2 0 0 2 2 2 1 EAP30/Vps36 family Rrf2 PF02082.15 gi|57641194|ref|YP_183672.1| - 0.0081 16.2 0.2 0.031 14.3 0.1 1.9 2 0 0 2 2 2 1 Transcriptional regulator GntR PF00392.16 gi|57641194|ref|YP_183672.1| - 0.026 13.9 2.1 0.067 12.6 0.3 2.0 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family Sigma70_r4_2 PF08281.7 gi|57641194|ref|YP_183672.1| - 0.026 13.9 0.1 0.2 11.1 0.0 2.1 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_36 PF13730.1 gi|57641194|ref|YP_183672.1| - 0.028 14.5 0.1 0.056 13.5 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain TFIIE_alpha PF02002.12 gi|57641194|ref|YP_183672.1| - 0.031 13.7 1.0 0.11 11.9 0.1 2.0 1 1 1 2 2 2 0 TFIIE alpha subunit HxlR PF01638.12 gi|57641194|ref|YP_183672.1| - 0.033 13.8 2.5 0.71 9.5 0.3 2.5 1 1 2 3 3 3 0 HxlR-like helix-turn-helix HTH_31 PF13560.1 gi|57641194|ref|YP_183672.1| - 0.034 14.3 0.2 0.06 13.5 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_CodY PF08222.6 gi|57641194|ref|YP_183672.1| - 0.035 13.4 0.1 0.55 9.6 0.0 2.2 2 0 0 2 2 2 0 CodY helix-turn-helix domain HTH_37 PF13744.1 gi|57641194|ref|YP_183672.1| - 0.041 13.6 0.1 0.077 12.8 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_IclR PF09339.5 gi|57641194|ref|YP_183672.1| - 0.044 13.3 0.5 0.089 12.3 0.4 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_19 PF12844.2 gi|57641194|ref|YP_183672.1| - 0.059 13.4 0.6 0.31 11.1 0.3 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain DUF977 PF06163.6 gi|57641194|ref|YP_183672.1| - 0.061 13.0 0.0 0.12 12.1 0.0 1.4 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF977) HTH_27 PF13463.1 gi|57641194|ref|YP_183672.1| - 0.064 13.5 0.5 0.54 10.6 0.1 2.3 2 1 1 3 3 3 0 Winged helix DNA-binding domain HTH_1 PF00126.22 gi|57641194|ref|YP_183672.1| - 0.077 12.7 0.3 0.18 11.5 0.1 1.7 2 0 0 2 2 1 0 Bacterial regulatory helix-turn-helix protein, lysR family DUF2250 PF10007.4 gi|57641194|ref|YP_183672.1| - 0.098 12.5 0.4 0.19 11.6 0.1 1.6 2 0 0 2 2 1 0 Uncharacterized protein conserved in archaea (DUF2250) DNA_binding_1 PF01035.15 gi|57641194|ref|YP_183672.1| - 0.13 12.0 0.0 0.28 10.9 0.0 1.6 1 1 1 2 2 2 0 6-O-methylguanine DNA methyltransferase, DNA binding domain MazG PF03819.12 gi|57641195|ref|YP_183673.1| - 4e-15 55.5 0.0 5.8e-15 54.9 0.0 1.2 1 0 0 1 1 1 1 MazG nucleotide pyrophosphohydrolase domain PRA-PH PF01503.12 gi|57641195|ref|YP_183673.1| - 0.00045 20.4 0.1 0.00059 20.0 0.1 1.3 1 0 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase MazG-like PF12643.2 gi|57641195|ref|YP_183673.1| - 0.12 12.3 0.1 0.19 11.6 0.1 1.3 1 0 0 1 1 1 0 MazG-like family HTH_5 PF01022.15 gi|57641196|ref|YP_183674.1| - 1.5e-11 43.7 0.2 5.3e-11 42.0 0.3 1.8 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|57641196|ref|YP_183674.1| - 2.9e-09 36.5 0.2 4.8e-09 35.8 0.2 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain ArsR PF09824.4 gi|57641196|ref|YP_183674.1| - 0.019 14.2 0.1 0.031 13.5 0.1 1.3 1 0 0 1 1 1 0 ArsR transcriptional regulator HTH_27 PF13463.1 gi|57641196|ref|YP_183674.1| - 0.063 13.6 0.8 0.26 11.6 0.1 2.1 2 1 0 2 2 2 0 Winged helix DNA-binding domain TrmB PF01978.14 gi|57641196|ref|YP_183674.1| - 0.12 12.0 0.1 0.72 9.5 0.0 2.2 2 1 1 3 3 3 0 Sugar-specific transcriptional regulator TrmB YscJ_FliF PF01514.12 gi|57641196|ref|YP_183674.1| - 0.14 11.2 0.0 0.2 10.7 0.0 1.2 1 0 0 1 1 1 0 Secretory protein of YscJ/FliF family Prok-JAB PF14464.1 gi|57641197|ref|YP_183675.1| - 5.1e-14 51.7 0.0 6e-14 51.4 0.0 1.1 1 0 0 1 1 1 1 Prokaryotic homologs of the JAB domain JAB PF01398.16 gi|57641197|ref|YP_183675.1| - 0.0092 15.7 0.0 0.061 13.0 0.0 2.0 2 0 0 2 2 2 1 JAB1/Mov34/MPN/PAD-1 ubiquitin protease DUF2666 PF10869.3 gi|57641198|ref|YP_183676.1| - 4.9e-84 278.9 0.9 1.3e-46 157.9 0.1 2.0 2 0 0 2 2 2 2 Protein of unknown function (DUF2666) Lon_C PF05362.8 gi|57641199|ref|YP_183677.1| - 1.6e-37 128.8 2.5 2.7e-37 128.0 1.8 1.3 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain AAA_32 PF13654.1 gi|57641199|ref|YP_183677.1| - 6.8e-28 97.5 0.0 2.7e-21 75.8 0.0 2.1 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.16 gi|57641199|ref|YP_183677.1| - 4e-18 65.3 0.1 1.8e-09 37.0 0.0 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.21 gi|57641199|ref|YP_183677.1| - 1.8e-16 60.0 0.0 1.2e-09 37.9 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_5 PF07728.9 gi|57641199|ref|YP_183677.1| - 1.7e-11 43.9 0.0 0.00022 20.9 0.0 2.7 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) ChlI PF13541.1 gi|57641199|ref|YP_183677.1| - 4.5e-11 42.3 0.9 9.7e-11 41.2 0.6 1.6 1 0 0 1 1 1 1 Subunit ChlI of Mg-chelatase MCM PF00493.18 gi|57641199|ref|YP_183677.1| - 1.6e-09 37.0 0.2 0.021 13.6 0.0 3.2 3 0 0 3 3 3 3 MCM2/3/5 family AAA PF00004.24 gi|57641199|ref|YP_183677.1| - 2.2e-07 31.1 0.0 0.034 14.3 0.0 2.7 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|57641199|ref|YP_183677.1| - 4.7e-07 30.0 0.0 0.0011 19.1 0.0 2.8 3 0 0 3 3 2 2 AAA domain Sigma54_activ_2 PF14532.1 gi|57641199|ref|YP_183677.1| - 1.4e-06 28.3 0.0 0.015 15.3 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain RuvB_N PF05496.7 gi|57641199|ref|YP_183677.1| - 1.5e-06 27.4 0.1 0.015 14.3 0.0 2.4 2 0 0 2 2 2 2 Holliday junction DNA helicase ruvB N-terminus AAA_3 PF07726.6 gi|57641199|ref|YP_183677.1| - 6.6e-05 22.5 0.1 0.066 12.8 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.1 gi|57641199|ref|YP_183677.1| - 0.0027 18.0 0.0 0.0095 16.2 0.0 2.0 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|57641199|ref|YP_183677.1| - 0.0029 17.6 0.0 0.017 15.0 0.0 2.2 3 0 0 3 3 3 1 AAA ATPase domain AAA_30 PF13604.1 gi|57641199|ref|YP_183677.1| - 0.0047 16.5 0.0 0.02 14.4 0.0 1.9 2 0 0 2 2 2 1 AAA domain T2SE PF00437.15 gi|57641199|ref|YP_183677.1| - 0.005 15.7 0.0 0.015 14.1 0.0 1.8 2 0 0 2 2 2 1 Type II/IV secretion system protein AAA_19 PF13245.1 gi|57641199|ref|YP_183677.1| - 0.0051 16.5 0.0 0.019 14.7 0.0 2.0 2 0 0 2 2 1 1 Part of AAA domain FtsK_SpoIIIE PF01580.13 gi|57641199|ref|YP_183677.1| - 0.007 15.8 0.0 0.022 14.2 0.0 1.8 1 0 0 1 1 1 1 FtsK/SpoIIIE family NACHT PF05729.7 gi|57641199|ref|YP_183677.1| - 0.0087 15.7 0.0 0.034 13.8 0.0 2.0 2 0 0 2 2 2 1 NACHT domain AAA_PrkA PF08298.6 gi|57641199|ref|YP_183677.1| - 0.012 14.2 0.0 0.5 9.0 0.0 2.2 2 0 0 2 2 2 0 PrkA AAA domain PhoH PF02562.11 gi|57641199|ref|YP_183677.1| - 0.015 14.5 0.0 0.068 12.3 0.0 2.0 2 0 0 2 2 2 0 PhoH-like protein AAA_29 PF13555.1 gi|57641199|ref|YP_183677.1| - 0.027 13.9 0.0 0.088 12.3 0.0 1.8 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_2 PF07724.9 gi|57641199|ref|YP_183677.1| - 0.028 14.3 0.2 14 5.5 0.0 3.5 3 1 0 3 3 3 0 AAA domain (Cdc48 subfamily) Grp1_Fun34_YaaH PF01184.14 gi|57641199|ref|YP_183677.1| - 0.035 13.3 0.2 0.058 12.6 0.2 1.2 1 0 0 1 1 1 0 GPR1/FUN34/yaaH family IstB_IS21 PF01695.12 gi|57641199|ref|YP_183677.1| - 0.045 13.1 0.0 0.16 11.3 0.0 1.8 2 0 0 2 2 2 0 IstB-like ATP binding protein DUF815 PF05673.8 gi|57641199|ref|YP_183677.1| - 0.067 12.0 0.0 0.21 10.4 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF815) AAA_25 PF13481.1 gi|57641199|ref|YP_183677.1| - 0.074 12.4 0.0 0.44 9.9 0.0 2.1 2 0 0 2 2 2 0 AAA domain Parvo_NS1 PF01057.12 gi|57641199|ref|YP_183677.1| - 0.081 11.7 0.0 0.15 10.9 0.0 1.3 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 ABC_tran PF00005.22 gi|57641199|ref|YP_183677.1| - 0.094 13.0 0.0 0.33 11.2 0.0 1.9 2 0 0 2 2 1 0 ABC transporter DUF898 PF05987.8 gi|57641199|ref|YP_183677.1| - 0.18 10.6 1.6 0.25 10.1 1.1 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF898) SPC25 PF06703.6 gi|57641200|ref|YP_183678.1| - 0.022 14.3 1.1 0.023 14.2 0.7 1.0 1 0 0 1 1 1 0 Microsomal signal peptidase 25 kDa subunit (SPC25) DUF3169 PF11368.3 gi|57641200|ref|YP_183678.1| - 0.18 10.9 2.9 0.21 10.7 2.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3169) DUF2244 PF10003.4 gi|57641200|ref|YP_183678.1| - 0.28 10.5 1.6 0.33 10.2 1.1 1.1 1 0 0 1 1 1 0 Integral membrane protein (DUF2244) DUF3094 PF11293.3 gi|57641200|ref|YP_183678.1| - 0.82 9.1 4.9 0.15 11.5 1.0 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF3094) Fig1 PF12351.3 gi|57641200|ref|YP_183678.1| - 0.96 9.3 3.6 1 9.1 2.5 1.0 1 0 0 1 1 1 0 Ca2+ regulator and membrane fusion protein Fig1 DUF4133 PF13571.1 gi|57641200|ref|YP_183678.1| - 1.8 8.8 5.6 2.3 8.5 3.9 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4133) CBS PF00571.23 gi|57641201|ref|YP_183679.1| - 1.9e-25 88.3 3.6 1.2e-15 57.0 0.1 2.3 2 0 0 2 2 2 2 CBS domain HTH_3 PF01381.17 gi|57641201|ref|YP_183679.1| - 1.4e-15 56.8 2.3 2e-15 56.3 1.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix HTH_19 PF12844.2 gi|57641201|ref|YP_183679.1| - 3.7e-13 49.3 0.4 7.4e-13 48.3 0.3 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.1 gi|57641201|ref|YP_183679.1| - 1.4e-11 44.3 0.1 2.6e-11 43.5 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.1 gi|57641201|ref|YP_183679.1| - 1.8e-06 28.0 0.4 5.3e-06 26.5 0.1 1.8 2 0 0 2 2 2 1 Cro/C1-type HTH DNA-binding domain HTH_37 PF13744.1 gi|57641201|ref|YP_183679.1| - 4.5e-06 26.3 0.2 1.1e-05 25.1 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.1 gi|57641201|ref|YP_183679.1| - 0.00032 20.2 0.1 0.00069 19.2 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|57641201|ref|YP_183679.1| - 0.095 12.0 0.2 1.7 8.0 0.0 2.5 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding EamA PF00892.15 gi|57641202|ref|YP_183680.1| - 4.6e-43 146.2 33.4 3.9e-22 78.6 9.7 2.2 2 0 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|57641202|ref|YP_183680.1| - 6.2e-11 42.4 31.2 4.8e-07 29.9 3.3 3.1 2 2 1 3 3 3 2 Multidrug resistance efflux transporter Sugar_transport PF06800.7 gi|57641202|ref|YP_183680.1| - 9.4e-09 34.7 15.0 1.1e-08 34.5 9.2 2.0 1 1 0 1 1 1 1 Sugar transport protein TPT PF03151.11 gi|57641202|ref|YP_183680.1| - 0.46 10.1 19.1 0.3 10.7 1.8 3.4 2 2 0 2 2 2 0 Triose-phosphate Transporter family Sec61_beta PF03911.11 gi|57641202|ref|YP_183680.1| - 1.2 8.9 7.2 0.42 10.4 1.6 2.8 2 1 1 3 3 3 0 Sec61beta family DHHA2 PF02833.9 gi|57641203|ref|YP_183681.1| - 0.028 14.6 1.3 0.063 13.4 0.2 2.0 2 0 0 2 2 2 0 DHHA2 domain TrkA_N PF02254.13 gi|57641204|ref|YP_183682.1| - 2.8e-19 69.2 1.9 4.4e-19 68.5 0.2 2.2 2 0 0 2 2 2 1 TrkA-N domain DHH PF01368.15 gi|57641204|ref|YP_183682.1| - 4.2e-17 62.1 0.0 1.2e-16 60.6 0.0 1.8 2 0 0 2 2 2 1 DHH family DHHA1 PF02272.14 gi|57641204|ref|YP_183682.1| - 5.5e-12 45.2 0.2 1.5e-11 43.8 0.2 1.8 1 0 0 1 1 1 1 DHHA1 domain ApbA PF02558.11 gi|57641204|ref|YP_183682.1| - 2.8e-05 23.6 0.1 5.1e-05 22.7 0.1 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NmrA PF05368.8 gi|57641204|ref|YP_183682.1| - 0.02 14.1 0.1 0.046 12.9 0.0 1.6 1 0 0 1 1 1 0 NmrA-like family NAD_binding_7 PF13241.1 gi|57641204|ref|YP_183682.1| - 0.13 12.5 0.0 0.33 11.2 0.0 1.7 1 0 0 1 1 1 0 Putative NAD(P)-binding Saccharop_dh PF03435.13 gi|57641204|ref|YP_183682.1| - 0.13 11.1 0.1 0.23 10.3 0.1 1.4 1 0 0 1 1 1 0 Saccharopine dehydrogenase Trp_halogenase PF04820.9 gi|57641204|ref|YP_183682.1| - 0.14 10.7 0.1 0.24 10.0 0.1 1.3 1 0 0 1 1 1 0 Tryptophan halogenase PRC PF05239.11 gi|57641205|ref|YP_183683.1| - 2e-12 46.7 0.9 2.3e-12 46.6 0.6 1.1 1 0 0 1 1 1 1 PRC-barrel domain Rick_17kDa_Anti PF05433.10 gi|57641206|ref|YP_183684.1| - 0.18 11.4 0.3 0.18 11.4 0.2 2.0 2 0 0 2 2 2 0 Glycine zipper 2TM domain CTP-dep_RFKase PF01982.11 gi|57641207|ref|YP_183685.1| - 9.1e-40 135.0 0.0 1.4e-39 134.4 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF120 HTH_24 PF13412.1 gi|57641207|ref|YP_183685.1| - 2.6e-09 36.2 0.1 5.8e-09 35.2 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.1 gi|57641207|ref|YP_183685.1| - 9.6e-09 34.9 0.3 2e-08 33.8 0.2 1.5 1 1 0 1 1 1 1 Crp-like helix-turn-helix domain MarR_2 PF12802.2 gi|57641207|ref|YP_183685.1| - 3.5e-08 32.9 0.5 5.9e-08 32.2 0.3 1.4 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|57641207|ref|YP_183685.1| - 5.9e-07 29.1 0.1 9.5e-07 28.4 0.1 1.3 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|57641207|ref|YP_183685.1| - 9e-07 29.1 0.2 1.7e-06 28.2 0.1 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_20 PF12840.2 gi|57641207|ref|YP_183685.1| - 1.8e-05 24.4 0.2 3.7e-05 23.4 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain GntR PF00392.16 gi|57641207|ref|YP_183685.1| - 2.9e-05 23.3 0.2 7.5e-05 22.0 0.1 1.7 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family LexA_DNA_bind PF01726.11 gi|57641207|ref|YP_183685.1| - 3.4e-05 23.3 0.5 0.0047 16.4 0.1 2.4 2 0 0 2 2 2 1 LexA DNA binding domain Rrf2 PF02082.15 gi|57641207|ref|YP_183685.1| - 0.00013 22.0 0.1 0.00023 21.1 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator HTH_DeoR PF08220.7 gi|57641207|ref|YP_183685.1| - 0.00013 21.4 0.1 0.00028 20.3 0.1 1.6 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_11 PF08279.7 gi|57641207|ref|YP_183685.1| - 0.00033 20.2 0.1 0.00066 19.2 0.1 1.5 1 0 0 1 1 1 1 HTH domain HTH_IclR PF09339.5 gi|57641207|ref|YP_183685.1| - 0.00066 19.2 0.1 0.0011 18.4 0.1 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_17 PF12728.2 gi|57641207|ref|YP_183685.1| - 0.00069 19.8 0.0 0.017 15.3 0.0 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_AsnC-type PF13404.1 gi|57641207|ref|YP_183685.1| - 0.00071 19.0 0.2 0.0016 17.9 0.1 1.7 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain TrmB PF01978.14 gi|57641207|ref|YP_183685.1| - 0.00085 18.9 0.1 0.0015 18.1 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_23 PF13384.1 gi|57641207|ref|YP_183685.1| - 0.0011 18.5 0.0 0.002 17.6 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain FeoC PF09012.5 gi|57641207|ref|YP_183685.1| - 0.0012 18.5 0.0 0.0018 17.9 0.0 1.3 1 0 0 1 1 1 1 FeoC like transcriptional regulator Crp PF00325.15 gi|57641207|ref|YP_183685.1| - 0.0014 18.0 1.7 0.002 17.5 0.1 2.1 3 0 0 3 3 2 1 Bacterial regulatory proteins, crp family SgrR_N PF12793.2 gi|57641207|ref|YP_183685.1| - 0.0019 18.1 0.0 0.0029 17.6 0.0 1.3 1 0 0 1 1 1 1 Sugar transport-related sRNA regulator N-term RepL PF05732.6 gi|57641207|ref|YP_183685.1| - 0.0036 16.5 0.0 0.0052 16.0 0.0 1.2 1 0 0 1 1 1 1 Firmicute plasmid replication protein (RepL) HTH_36 PF13730.1 gi|57641207|ref|YP_183685.1| - 0.0064 16.5 0.0 0.011 15.7 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Fe_dep_repress PF01325.14 gi|57641207|ref|YP_183685.1| - 0.0094 15.8 0.0 0.02 14.7 0.0 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain DUF4364 PF14277.1 gi|57641207|ref|YP_183685.1| - 0.016 14.8 0.0 0.023 14.3 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) HTH_5 PF01022.15 gi|57641207|ref|YP_183685.1| - 0.019 14.6 0.0 0.051 13.2 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_28 PF13518.1 gi|57641207|ref|YP_183685.1| - 0.019 14.9 0.0 0.039 13.9 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_7 PF02796.10 gi|57641207|ref|YP_183685.1| - 0.02 14.7 0.0 0.036 13.9 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase Penicillinase_R PF03965.11 gi|57641207|ref|YP_183685.1| - 0.02 14.9 0.0 0.033 14.2 0.0 1.5 1 0 0 1 1 1 0 Penicillinase repressor HTH_29 PF13551.1 gi|57641207|ref|YP_183685.1| - 0.028 14.5 0.0 0.044 13.9 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn helix MerR PF00376.18 gi|57641207|ref|YP_183685.1| - 0.032 13.8 0.5 0.37 10.3 0.3 2.5 1 1 0 1 1 1 0 MerR family regulatory protein PadR PF03551.9 gi|57641207|ref|YP_183685.1| - 0.12 12.1 0.0 0.17 11.7 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family HTH_10 PF04967.7 gi|57641207|ref|YP_183685.1| - 0.14 11.7 0.0 0.28 10.8 0.0 1.4 1 0 0 1 1 1 0 HTH DNA binding domain Methyltransf_25 PF13649.1 gi|57641208|ref|YP_183686.1| - 6e-19 68.2 0.0 1e-18 67.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|57641208|ref|YP_183686.1| - 1.2e-18 67.1 0.0 1.5e-18 66.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|57641208|ref|YP_183686.1| - 1.6e-18 67.2 0.0 2.7e-18 66.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|57641208|ref|YP_183686.1| - 2.7e-18 66.2 0.0 5.1e-18 65.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|57641208|ref|YP_183686.1| - 6.9e-14 51.5 0.0 9e-14 51.1 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.7 gi|57641208|ref|YP_183686.1| - 9.5e-14 51.6 0.0 1.7e-13 50.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|57641208|ref|YP_183686.1| - 5e-12 45.8 0.0 8.1e-12 45.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|57641208|ref|YP_183686.1| - 1.3e-11 44.4 0.0 1.8e-11 44.0 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|57641208|ref|YP_183686.1| - 1.4e-08 34.3 0.0 2.1e-08 33.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain TehB PF03848.9 gi|57641208|ref|YP_183686.1| - 9.3e-08 31.4 0.0 1.3e-07 31.0 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB RrnaAD PF00398.15 gi|57641208|ref|YP_183686.1| - 7.6e-05 21.8 0.0 0.00012 21.2 0.0 1.3 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase FmrO PF07091.6 gi|57641208|ref|YP_183686.1| - 0.00037 19.5 0.0 0.00053 19.0 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA methyltransferase (FmrO) Methyltransf_4 PF02390.12 gi|57641208|ref|YP_183686.1| - 0.00038 19.5 0.0 0.001 18.1 0.0 1.7 2 0 0 2 2 2 1 Putative methyltransferase Methyltransf_32 PF13679.1 gi|57641208|ref|YP_183686.1| - 0.00094 18.8 0.0 0.0014 18.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|57641208|ref|YP_183686.1| - 0.0022 17.5 0.0 0.0036 16.8 0.0 1.3 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 CheR PF01739.13 gi|57641208|ref|YP_183686.1| - 0.0033 16.7 0.0 0.051 12.8 0.0 2.4 1 1 1 2 2 2 1 CheR methyltransferase, SAM binding domain MethyltransfD12 PF02086.10 gi|57641208|ref|YP_183686.1| - 0.0036 16.7 0.0 0.0045 16.4 0.0 1.3 1 0 0 1 1 1 1 D12 class N6 adenine-specific DNA methyltransferase PrmA PF06325.8 gi|57641208|ref|YP_183686.1| - 0.0044 16.1 0.0 0.0065 15.6 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) TPMT PF05724.6 gi|57641208|ref|YP_183686.1| - 0.01 15.2 0.0 0.014 14.8 0.0 1.3 1 0 0 1 1 1 0 Thiopurine S-methyltransferase (TPMT) NodS PF05401.6 gi|57641208|ref|YP_183686.1| - 0.012 14.9 0.0 0.02 14.3 0.0 1.2 1 0 0 1 1 1 0 Nodulation protein S (NodS) Methyltransf_15 PF09445.5 gi|57641208|ref|YP_183686.1| - 0.016 14.8 0.0 0.028 13.9 0.0 1.4 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase tRNA_U5-meth_tr PF05958.6 gi|57641208|ref|YP_183686.1| - 0.11 11.1 0.1 0.21 10.2 0.0 1.4 2 0 0 2 2 2 0 tRNA (Uracil-5-)-methyltransferase tRNA-synt_1 PF00133.17 gi|57641209|ref|YP_183687.1| - 7.8e-144 479.9 0.6 4.5e-143 477.4 0.4 1.9 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.8 gi|57641209|ref|YP_183687.1| - 2.2e-39 134.6 1.0 2.2e-39 134.6 0.7 1.8 2 0 0 2 2 2 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.6 gi|57641209|ref|YP_183687.1| - 2.8e-28 98.6 1.6 4.4e-16 58.5 0.0 3.5 3 0 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1e PF01406.14 gi|57641209|ref|YP_183687.1| - 1.5e-05 24.2 0.0 0.099 11.7 0.0 2.4 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1_2 PF13603.1 gi|57641209|ref|YP_183687.1| - 2.3e-05 23.8 0.1 7.1e-05 22.1 0.0 1.8 1 1 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 CRS1_YhbY PF01985.16 gi|57641210|ref|YP_183688.1| - 8.4e-19 67.3 0.1 1.4e-18 66.6 0.1 1.4 1 0 0 1 1 1 1 CRS1 / YhbY (CRM) domain GPP34 PF05719.6 gi|57641210|ref|YP_183688.1| - 0.032 14.2 2.0 2.4 8.2 1.4 2.1 1 1 0 1 1 1 0 Golgi phosphoprotein 3 (GPP34) Ribosomal_S19e PF01090.14 gi|57641211|ref|YP_183689.1| - 4.1e-61 204.5 0.0 4.6e-61 204.3 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S19e HTH_12 PF08461.5 gi|57641211|ref|YP_183689.1| - 8.8e-05 22.1 0.0 0.0034 17.0 0.0 2.7 3 0 0 3 3 3 1 Ribonuclease R winged-helix domain GntR PF00392.16 gi|57641211|ref|YP_183689.1| - 0.0014 18.0 0.0 0.0043 16.4 0.0 1.9 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_45 PF14947.1 gi|57641211|ref|YP_183689.1| - 0.018 14.8 0.0 0.028 14.2 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix TrmB PF01978.14 gi|57641211|ref|YP_183689.1| - 0.028 14.1 0.0 0.07 12.8 0.0 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB dsDNA_bind PF01984.15 gi|57641213|ref|YP_183691.1| - 7.3e-29 99.8 13.7 8.2e-29 99.7 9.5 1.0 1 0 0 1 1 1 1 Double-stranded DNA-binding domain PP2C_C PF07830.8 gi|57641213|ref|YP_183691.1| - 0.0039 17.2 1.7 0.0065 16.5 0.9 1.7 1 1 0 1 1 1 1 Protein serine/threonine phosphatase 2C, C-terminal domain Rhomboid_SP PF12595.3 gi|57641213|ref|YP_183691.1| - 0.033 13.7 0.2 0.04 13.5 0.1 1.1 1 0 0 1 1 1 0 Rhomboid serine protease Nup54 PF13874.1 gi|57641213|ref|YP_183691.1| - 0.36 10.4 8.6 0.45 10.1 5.9 1.2 1 0 0 1 1 1 0 Nucleoporin complex subunit 54 Radial_spoke_3 PF06098.6 gi|57641213|ref|YP_183691.1| - 0.78 8.6 9.5 0.89 8.4 6.6 1.1 1 0 0 1 1 1 0 Radial spoke protein 3 TFIIB PF00382.14 gi|57641215|ref|YP_183693.1| - 4.6e-52 173.7 3.8 6.2e-26 90.0 0.3 2.4 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|57641215|ref|YP_183693.1| - 5.7e-20 70.3 3.4 9e-20 69.7 2.4 1.3 1 0 0 1 1 1 1 TFIIB zinc-binding HARE-HTH PF05066.8 gi|57641215|ref|YP_183693.1| - 1.1e-05 25.6 0.1 0.36 11.2 0.0 3.1 2 1 1 3 3 3 2 HB1, ASXL, restriction endonuclease HTH domain Sigma70_r4 PF04545.11 gi|57641215|ref|YP_183693.1| - 7e-05 22.0 1.0 0.003 16.8 0.3 3.5 3 0 0 3 3 3 1 Sigma-70, region 4 Cyclin_N PF00134.18 gi|57641215|ref|YP_183693.1| - 0.0018 17.8 0.1 0.74 9.3 0.0 2.2 1 1 1 2 2 2 2 Cyclin, N-terminal domain Mg_chelatase_2 PF13335.1 gi|57641215|ref|YP_183693.1| - 0.0019 18.5 2.0 4 7.8 0.3 3.2 2 1 0 2 2 2 2 Magnesium chelatase, subunit ChlI HTH_AsnC-type PF13404.1 gi|57641215|ref|YP_183693.1| - 0.0022 17.5 0.2 0.18 11.3 0.1 3.2 3 0 0 3 3 3 1 AsnC-type helix-turn-helix domain Rubredoxin PF00301.15 gi|57641215|ref|YP_183693.1| - 0.0034 17.2 3.8 0.068 13.0 0.3 2.5 1 1 1 2 2 2 1 Rubredoxin FYDLN_acid PF09538.5 gi|57641215|ref|YP_183693.1| - 0.011 16.3 0.0 0.022 15.3 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (FYDLN_acid) HTH_24 PF13412.1 gi|57641215|ref|YP_183693.1| - 0.012 14.9 1.2 0.24 10.8 0.1 3.1 4 0 0 4 4 3 0 Winged helix-turn-helix DNA-binding HTH_11 PF08279.7 gi|57641215|ref|YP_183693.1| - 0.015 14.9 0.2 6.7 6.4 0.0 2.7 3 0 0 3 3 2 0 HTH domain OrfB_Zn_ribbon PF07282.6 gi|57641215|ref|YP_183693.1| - 0.033 13.8 0.3 0.067 12.8 0.2 1.5 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Prim_Zn_Ribbon PF08273.7 gi|57641215|ref|YP_183693.1| - 0.037 14.1 0.3 0.069 13.2 0.2 1.4 1 0 0 1 1 1 0 Zinc-binding domain of primase-helicase GerE PF00196.14 gi|57641215|ref|YP_183693.1| - 0.043 13.1 0.0 0.47 9.8 0.1 2.5 3 0 0 3 3 3 0 Bacterial regulatory proteins, luxR family DZR PF12773.2 gi|57641215|ref|YP_183693.1| - 0.046 13.5 0.1 0.076 12.8 0.1 1.3 1 0 0 1 1 1 0 Double zinc ribbon Cys_rich_CPCC PF14206.1 gi|57641215|ref|YP_183693.1| - 0.055 13.0 0.9 0.1 12.2 0.6 1.4 1 0 0 1 1 1 0 Cysteine-rich CPCC UPF0253 PF06786.7 gi|57641215|ref|YP_183693.1| - 0.064 13.3 0.8 1.1 9.4 0.1 2.9 3 0 0 3 3 3 0 Uncharacterised protein family (UPF0253) Ribosomal_S27e PF01667.12 gi|57641215|ref|YP_183693.1| - 0.07 12.6 0.7 0.13 11.8 0.5 1.3 1 0 0 1 1 1 0 Ribosomal protein S27 YceG PF02618.11 gi|57641215|ref|YP_183693.1| - 0.079 11.9 0.1 0.11 11.5 0.1 1.2 1 0 0 1 1 1 0 YceG-like family Lar_restr_allev PF14354.1 gi|57641215|ref|YP_183693.1| - 0.14 12.5 0.8 0.31 11.3 0.5 1.6 1 0 0 1 1 1 0 Restriction alleviation protein Lar zf-ribbon_3 PF13248.1 gi|57641215|ref|YP_183693.1| - 0.82 8.9 3.3 3.8 6.8 2.1 2.0 1 1 1 2 2 2 0 zinc-ribbon domain A2L_zn_ribbon PF08792.5 gi|57641215|ref|YP_183693.1| - 1.2 8.7 3.7 7.5 6.1 0.1 2.0 1 1 0 1 1 1 0 A2L zinc ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|57641215|ref|YP_183693.1| - 2.7 7.8 5.2 0.37 10.6 0.5 1.9 2 0 0 2 2 1 0 Transposase zinc-ribbon domain HTH_31 PF13560.1 gi|57641215|ref|YP_183693.1| - 5.6 7.2 8.1 0.53 10.5 0.2 3.2 3 1 0 3 3 3 0 Helix-turn-helix domain XPG_I PF00867.13 gi|57641216|ref|YP_183694.1| - 2.5e-27 94.7 0.0 4.6e-27 93.9 0.0 1.4 1 0 0 1 1 1 1 XPG I-region XPG_N PF00752.12 gi|57641216|ref|YP_183694.1| - 2.9e-23 82.0 0.0 6.4e-23 80.9 0.0 1.5 1 0 0 1 1 1 1 XPG N-terminal domain 5_3_exonuc_N PF02739.11 gi|57641216|ref|YP_183694.1| - 0.031 13.6 0.1 0.13 11.6 0.0 2.1 2 1 0 2 2 2 0 5'-3' exonuclease, N-terminal resolvase-like domain MAS20 PF02064.10 gi|57641216|ref|YP_183694.1| - 0.037 13.9 1.1 0.09 12.6 0.5 1.8 2 0 0 2 2 2 0 MAS20 protein import receptor 5_3_exonuc PF01367.15 gi|57641216|ref|YP_183694.1| - 0.076 13.2 0.1 0.19 12.0 0.0 1.7 1 0 0 1 1 1 0 5'-3' exonuclease, C-terminal SAM fold MoeA_N PF03453.12 gi|57641217|ref|YP_183695.1| - 4.5e-57 191.9 0.7 1.6e-56 190.1 0.2 1.9 2 0 0 2 2 2 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.19 gi|57641217|ref|YP_183695.1| - 9.8e-29 99.6 0.0 1.5e-28 99.0 0.0 1.3 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.10 gi|57641217|ref|YP_183695.1| - 1.8e-20 72.6 0.2 6.3e-20 70.9 0.0 2.1 3 0 0 3 3 3 1 MoeA C-terminal region (domain IV) Asn_synthase PF00733.16 gi|57641218|ref|YP_183696.1| - 2.4e-06 27.2 0.0 4.8e-06 26.2 0.0 1.5 1 0 0 1 1 1 1 Asparagine synthase QueC PF06508.8 gi|57641218|ref|YP_183696.1| - 0.0001 21.6 0.0 0.00013 21.2 0.0 1.3 1 1 0 1 1 1 1 Queuosine biosynthesis protein QueC ATP_bind_4 PF01902.12 gi|57641218|ref|YP_183696.1| - 0.00087 18.7 0.1 0.0017 17.7 0.0 1.6 2 0 0 2 2 2 1 ATP-binding region tRNA_Me_trans PF03054.11 gi|57641218|ref|YP_183696.1| - 0.0036 15.9 0.0 0.005 15.4 0.0 1.3 1 1 0 1 1 1 1 tRNA methyl transferase ThiI PF02568.9 gi|57641218|ref|YP_183696.1| - 0.011 15.2 0.0 0.024 14.0 0.0 1.6 2 0 0 2 2 2 0 Thiamine biosynthesis protein (ThiI) DJ-1_PfpI PF01965.19 gi|57641219|ref|YP_183697.1| - 2.4e-40 137.3 0.0 2.9e-40 137.1 0.0 1.0 1 0 0 1 1 1 1 DJ-1/PfpI family DUF4066 PF13278.1 gi|57641219|ref|YP_183697.1| - 3.8e-13 49.0 0.0 4.8e-13 48.7 0.0 1.1 1 0 0 1 1 1 1 Putative amidotransferase GATase PF00117.23 gi|57641219|ref|YP_183697.1| - 0.0012 18.3 0.0 0.0015 17.9 0.0 1.3 1 1 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.9 gi|57641219|ref|YP_183697.1| - 0.0036 16.9 0.0 0.0054 16.3 0.0 1.4 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain Peptidase_C26 PF07722.8 gi|57641219|ref|YP_183697.1| - 0.022 14.2 0.0 0.058 12.8 0.0 1.7 1 1 0 1 1 1 0 Peptidase C26 SNO PF01174.14 gi|57641219|ref|YP_183697.1| - 0.058 13.0 0.0 0.076 12.6 0.0 1.2 1 0 0 1 1 1 0 SNO glutamine amidotransferase family GATase_5 PF13507.1 gi|57641219|ref|YP_183697.1| - 0.12 11.2 0.0 0.17 10.7 0.0 1.5 1 1 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain AsnC_trans_reg PF01037.16 gi|57641220|ref|YP_183698.1| - 9e-19 66.9 0.1 1.3e-18 66.4 0.0 1.3 1 0 0 1 1 1 1 AsnC family HTH_24 PF13412.1 gi|57641220|ref|YP_183698.1| - 2.8e-16 58.6 1.8 4.3e-16 58.0 1.2 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|57641220|ref|YP_183698.1| - 3.4e-16 58.4 0.0 4.9e-16 57.9 0.0 1.2 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain TrmB PF01978.14 gi|57641220|ref|YP_183698.1| - 9.6e-08 31.6 0.2 1.9e-07 30.6 0.1 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.7 gi|57641220|ref|YP_183698.1| - 2.8e-06 26.8 0.2 5.5e-06 25.9 0.1 1.5 1 0 0 1 1 1 1 HTH domain HTH_5 PF01022.15 gi|57641220|ref|YP_183698.1| - 2e-05 24.1 0.1 3.1e-05 23.5 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_28 PF13518.1 gi|57641220|ref|YP_183698.1| - 7.9e-05 22.5 0.0 0.00031 20.6 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|57641220|ref|YP_183698.1| - 0.00018 21.0 0.0 0.00088 18.8 0.0 2.0 2 0 0 2 2 2 1 Homeodomain-like domain MarR PF01047.17 gi|57641220|ref|YP_183698.1| - 0.00076 19.1 0.1 0.0016 18.0 0.1 1.5 1 0 0 1 1 1 1 MarR family HTH_Mga PF08280.6 gi|57641220|ref|YP_183698.1| - 0.00096 18.8 2.1 0.001 18.8 0.2 2.0 3 0 0 3 3 1 1 M protein trans-acting positive regulator (MGA) HTH domain LexA_DNA_bind PF01726.11 gi|57641220|ref|YP_183698.1| - 0.0014 18.1 0.1 0.0027 17.2 0.1 1.5 1 0 0 1 1 1 1 LexA DNA binding domain HTH_20 PF12840.2 gi|57641220|ref|YP_183698.1| - 0.0014 18.3 0.0 0.003 17.3 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|57641220|ref|YP_183698.1| - 0.0029 17.1 0.0 0.0054 16.2 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|57641220|ref|YP_183698.1| - 0.0031 17.1 0.0 0.005 16.4 0.0 1.3 1 0 0 1 1 1 1 MarR family B-block_TFIIIC PF04182.7 gi|57641220|ref|YP_183698.1| - 0.0069 16.2 0.0 0.01 15.6 0.0 1.3 1 1 0 1 1 1 1 B-block binding subunit of TFIIIC HTH_10 PF04967.7 gi|57641220|ref|YP_183698.1| - 0.01 15.4 0.1 0.018 14.6 0.0 1.3 1 0 0 1 1 1 0 HTH DNA binding domain HTH_34 PF13601.1 gi|57641220|ref|YP_183698.1| - 0.01 15.8 0.1 0.018 15.0 0.1 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain Rrf2 PF02082.15 gi|57641220|ref|YP_183698.1| - 0.013 15.5 0.2 0.11 12.6 0.1 2.1 2 0 0 2 2 2 0 Transcriptional regulator NapD PF03927.8 gi|57641220|ref|YP_183698.1| - 0.015 15.1 0.0 0.03 14.1 0.0 1.5 1 0 0 1 1 1 0 NapD protein RepL PF05732.6 gi|57641220|ref|YP_183698.1| - 0.017 14.3 0.1 0.025 13.7 0.0 1.3 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) HTH_36 PF13730.1 gi|57641220|ref|YP_183698.1| - 0.027 14.6 0.1 0.051 13.7 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_27 PF13463.1 gi|57641220|ref|YP_183698.1| - 0.032 14.5 0.1 0.079 13.2 0.0 1.6 2 0 0 2 2 1 0 Winged helix DNA-binding domain HTH_29 PF13551.1 gi|57641220|ref|YP_183698.1| - 0.036 14.2 0.0 0.072 13.2 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn helix HTH_DeoR PF08220.7 gi|57641220|ref|YP_183698.1| - 0.039 13.4 0.1 0.069 12.6 0.1 1.4 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_40 PF14493.1 gi|57641220|ref|YP_183698.1| - 0.045 13.9 0.2 0.099 12.8 0.2 1.8 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_38 PF13936.1 gi|57641220|ref|YP_183698.1| - 0.048 13.2 0.1 0.081 12.4 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain DUF2250 PF10007.4 gi|57641220|ref|YP_183698.1| - 0.071 13.0 0.6 0.54 10.1 0.1 2.0 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) DDRGK PF09756.4 gi|57641220|ref|YP_183698.1| - 0.08 12.3 0.8 0.13 11.6 0.5 1.2 1 0 0 1 1 1 0 DDRGK domain RuvB_C PF05491.8 gi|57641220|ref|YP_183698.1| - 0.08 12.5 0.1 0.14 11.7 0.0 1.4 1 0 0 1 1 1 0 Holliday junction DNA helicase ruvB C-terminus Mga PF05043.8 gi|57641220|ref|YP_183698.1| - 0.089 13.0 0.1 0.19 12.0 0.1 1.5 1 0 0 1 1 1 0 Mga helix-turn-helix domain Phage_AlpA PF05930.7 gi|57641220|ref|YP_183698.1| - 0.11 12.2 0.0 0.25 11.1 0.0 1.5 1 0 0 1 1 1 0 Prophage CP4-57 regulatory protein (AlpA) PadR PF03551.9 gi|57641220|ref|YP_183698.1| - 0.12 12.1 0.0 0.26 11.0 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family TFIIE_alpha PF02002.12 gi|57641220|ref|YP_183698.1| - 0.14 11.7 1.2 0.17 11.3 0.2 1.6 2 0 0 2 2 2 0 TFIIE alpha subunit TGS PF02824.16 gi|57641221|ref|YP_183699.1| - 1.5e-24 85.6 0.0 1.2e-23 82.7 0.0 2.3 2 0 0 2 2 2 1 TGS domain MMR_HSR1 PF01926.18 gi|57641221|ref|YP_183699.1| - 7.9e-20 70.9 0.0 2e-19 69.6 0.0 1.8 1 1 1 2 2 2 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|57641221|ref|YP_183699.1| - 5.5e-12 45.2 0.0 9.3e-11 41.2 0.0 2.2 2 0 0 2 2 2 1 Ferrous iron transport protein B MMR_HSR1_C PF08438.5 gi|57641221|ref|YP_183699.1| - 0.00014 22.0 0.2 0.0011 19.1 0.0 2.3 2 0 0 2 2 2 1 GTPase of unknown function C-terminal Miro PF08477.8 gi|57641221|ref|YP_183699.1| - 0.00064 20.2 0.0 0.002 18.6 0.0 1.9 1 0 0 1 1 1 1 Miro-like protein SRPRB PF09439.5 gi|57641221|ref|YP_183699.1| - 0.008 15.4 0.1 0.026 13.7 0.0 1.8 2 0 0 2 2 2 1 Signal recognition particle receptor beta subunit YchF-GTPase_C PF06071.8 gi|57641221|ref|YP_183699.1| - 0.011 15.5 0.1 0.25 11.1 0.1 2.5 1 1 0 1 1 1 0 Protein of unknown function (DUF933) AAA_22 PF13401.1 gi|57641221|ref|YP_183699.1| - 0.022 14.8 0.2 2.8 8.1 0.0 2.9 3 1 0 3 3 3 0 AAA domain Dus PF01207.12 gi|57641221|ref|YP_183699.1| - 0.072 11.9 0.3 0.34 9.7 0.2 1.9 2 0 0 2 2 2 0 Dihydrouridine synthase (Dus) Myb_DNA-bind_4 PF13837.1 gi|57641221|ref|YP_183699.1| - 0.1 12.7 1.5 8.3 6.6 0.1 2.7 1 1 1 2 2 2 0 Myb/SANT-like DNA-binding domain UPRTase PF14681.1 gi|57641222|ref|YP_183700.1| - 3.3e-55 186.5 0.1 3.8e-55 186.2 0.1 1.0 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Pribosyltran PF00156.22 gi|57641222|ref|YP_183700.1| - 2.6e-10 40.1 2.1 8.1e-10 38.4 1.4 1.8 1 1 0 1 1 1 1 Phosphoribosyl transferase domain PRTase_2 PF15609.1 gi|57641222|ref|YP_183700.1| - 0.0012 18.1 0.1 0.0037 16.6 0.1 1.8 1 1 0 1 1 1 1 Phosphoribosyl transferase MatE PF01554.13 gi|57641223|ref|YP_183701.1| - 6.4e-71 237.2 28.0 5.7e-37 126.8 6.4 3.3 3 1 2 5 5 5 2 MatE Polysacc_synt_C PF14667.1 gi|57641223|ref|YP_183701.1| - 2.4e-12 46.8 1.9 2.4e-12 46.8 1.3 4.7 4 3 0 4 4 4 1 Polysaccharide biosynthesis C-terminal domain MatE PF01554.13 gi|57641224|ref|YP_183702.1| - 6.3e-70 233.9 29.3 4.6e-38 130.3 4.3 3.6 4 1 0 4 4 4 2 MatE Polysacc_synt_C PF14667.1 gi|57641224|ref|YP_183702.1| - 1.7e-09 37.6 1.2 1.7e-09 37.6 0.8 4.2 5 0 0 5 5 5 2 Polysaccharide biosynthesis C-terminal domain PIN PF01850.16 gi|57641225|ref|YP_183703.1| - 1.5e-22 80.1 3.7 1.9e-22 79.8 2.6 1.1 1 0 0 1 1 1 1 PIN domain Antitoxin-MazE PF04014.13 gi|57641226|ref|YP_183704.1| - 1.9e-05 24.2 2.4 1.9e-05 24.2 1.7 2.0 2 0 0 2 2 2 1 Antidote-toxin recognition MazE MraZ PF02381.13 gi|57641226|ref|YP_183704.1| - 4.8e-05 23.0 0.0 5.5e-05 22.8 0.0 1.2 1 0 0 1 1 1 1 MraZ protein PPDK_N PF01326.14 gi|57641227|ref|YP_183705.1| - 3.3e-111 371.4 0.2 5.9e-111 370.6 0.1 1.3 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers_C PF02896.13 gi|57641227|ref|YP_183705.1| - 1.1e-97 326.5 0.0 1.8e-97 325.7 0.0 1.3 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilizers PF00391.18 gi|57641227|ref|YP_183705.1| - 3e-30 103.6 1.2 7.8e-30 102.2 0.9 1.8 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain Prenyltrans_1 PF13243.1 gi|57641228|ref|YP_183706.1| - 4e-27 94.3 2.2 2.3e-25 88.7 0.3 2.5 2 0 0 2 2 2 1 Prenyltransferase-like PMT_2 PF13231.1 gi|57641228|ref|YP_183706.1| - 2.6e-13 50.1 16.4 2.6e-13 50.1 11.3 2.7 4 0 0 4 4 4 1 Dolichyl-phosphate-mannose-protein mannosyltransferase Prenyltrans_2 PF13249.1 gi|57641228|ref|YP_183706.1| - 3.7e-09 36.9 2.6 4e-06 27.2 0.5 2.9 1 1 2 3 3 3 3 Prenyltransferase-like C5-epim_C PF06662.8 gi|57641228|ref|YP_183706.1| - 0.00026 20.3 2.4 0.0036 16.6 0.2 2.5 2 0 0 2 2 2 1 D-glucuronyl C5-epimerase C-terminus DUF1680 PF07944.7 gi|57641228|ref|YP_183706.1| - 0.00095 17.5 0.7 0.0033 15.7 0.1 1.8 2 0 0 2 2 2 1 Putative glycosyl hydrolase of unknown function (DUF1680) PMT PF02366.13 gi|57641228|ref|YP_183706.1| - 0.0015 17.9 16.7 0.0015 17.9 11.6 2.0 2 0 0 2 2 2 1 Dolichyl-phosphate-mannose-protein mannosyltransferase DoxX_2 PF13564.1 gi|57641228|ref|YP_183706.1| - 0.0091 15.9 7.2 0.19 11.7 1.6 2.9 2 0 0 2 2 2 2 DoxX-like family Pec_lyase PF09492.5 gi|57641228|ref|YP_183706.1| - 0.017 14.3 2.5 0.23 10.5 0.3 2.3 2 0 0 2 2 2 0 Pectic acid lyase DUF2518 PF10726.4 gi|57641229|ref|YP_183707.1| - 0.17 11.4 2.3 0.44 10.0 1.6 1.8 1 0 0 1 1 1 0 Protein of function (DUF2518) Peptidase_C1 PF00112.18 gi|57641230|ref|YP_183708.1| - 1.1e-06 28.6 5.0 1.6e-05 24.9 3.4 2.3 2 0 0 2 2 2 1 Papain family cysteine protease Peptidase_C1_2 PF03051.10 gi|57641230|ref|YP_183708.1| - 0.0035 15.9 0.7 0.0035 15.9 0.5 1.9 2 0 0 2 2 2 1 Peptidase C1-like family Gmad2 PF10648.4 gi|57641230|ref|YP_183708.1| - 0.044 13.9 1.3 0.23 11.6 0.9 2.3 1 0 0 1 1 1 0 Immunoglobulin-like domain of bacterial spore germination TPR_1 PF00515.23 gi|57641230|ref|YP_183708.1| - 0.076 12.6 2.7 0.57 9.8 0.6 3.1 3 0 0 3 3 3 0 Tetratricopeptide repeat DUF424 PF04242.8 gi|57641231|ref|YP_183709.1| - 3.9e-33 113.3 0.0 4.3e-33 113.2 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF424) NMD3 PF04981.8 gi|57641232|ref|YP_183710.1| - 2.5e-55 187.1 3.6 6.6e-55 185.7 2.5 1.6 1 1 0 1 1 1 1 NMD3 family EFP PF01132.15 gi|57641232|ref|YP_183710.1| - 0.0053 16.4 0.1 0.018 14.7 0.0 1.9 1 0 0 1 1 1 1 Elongation factor P (EF-P) OB domain DZR PF12773.2 gi|57641232|ref|YP_183710.1| - 0.047 13.5 5.3 0.63 9.8 2.4 2.7 2 1 0 2 2 2 0 Double zinc ribbon DUF4222 PF13973.1 gi|57641232|ref|YP_183710.1| - 0.055 12.8 0.1 0.12 11.7 0.1 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4222) GFA PF04828.9 gi|57641232|ref|YP_183710.1| - 0.11 12.4 2.5 5.3 7.0 0.0 3.4 3 0 0 3 3 3 0 Glutathione-dependent formaldehyde-activating enzyme zf-ribbon_3 PF13248.1 gi|57641232|ref|YP_183710.1| - 1 8.6 5.6 41 3.5 0.0 3.3 3 0 0 3 3 3 0 zinc-ribbon domain zf-FPG_IleRS PF06827.9 gi|57641232|ref|YP_183710.1| - 5.3 6.7 9.0 2 8.1 0.6 3.4 3 0 0 3 3 3 0 Zinc finger found in FPG and IleRS DUF1464 PF07318.7 gi|57641233|ref|YP_183711.1| - 3.2e-140 466.8 0.5 3.6e-140 466.6 0.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1464) P22_CoatProtein PF11651.3 gi|57641233|ref|YP_183711.1| - 0.089 11.3 0.0 0.12 10.9 0.0 1.1 1 0 0 1 1 1 0 P22 coat protein - gene protein 5 Pyr_redox_2 PF07992.9 gi|57641234|ref|YP_183712.1| - 2.1e-33 115.9 0.1 1.8e-32 112.8 0.0 3.5 2 1 0 2 2 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|57641234|ref|YP_183712.1| - 6.5e-22 77.7 8.6 3.8e-17 62.4 1.7 3.5 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|57641234|ref|YP_183712.1| - 7.4e-21 74.2 0.0 1.5e-20 73.2 0.0 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox_3 PF13738.1 gi|57641234|ref|YP_183712.1| - 7.9e-15 55.4 0.4 2.2e-09 37.6 0.0 3.1 2 1 1 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|57641234|ref|YP_183712.1| - 9.6e-13 47.7 3.5 0.0022 16.9 0.0 4.2 4 0 0 4 4 4 4 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|57641234|ref|YP_183712.1| - 1.1e-07 30.6 0.7 0.0071 14.8 0.0 4.0 3 1 1 4 4 4 2 HI0933-like protein NAD_binding_7 PF13241.1 gi|57641234|ref|YP_183712.1| - 2.1e-07 31.1 0.5 0.00046 20.4 0.1 2.5 2 0 0 2 2 2 2 Putative NAD(P)-binding 3HCDH_N PF02737.13 gi|57641234|ref|YP_183712.1| - 1.9e-05 24.4 0.9 0.00012 21.7 0.1 2.1 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_9 PF13454.1 gi|57641234|ref|YP_183712.1| - 3.6e-05 23.5 0.4 0.91 9.2 0.0 3.7 3 1 1 4 4 4 1 FAD-NAD(P)-binding NAD_binding_8 PF13450.1 gi|57641234|ref|YP_183712.1| - 3.6e-05 23.7 0.1 0.0014 18.5 0.0 2.5 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Lycopene_cycl PF05834.7 gi|57641234|ref|YP_183712.1| - 3.7e-05 22.8 0.1 0.0096 14.8 0.0 2.8 2 1 1 3 3 3 1 Lycopene cyclase protein Amino_oxidase PF01593.19 gi|57641234|ref|YP_183712.1| - 4.8e-05 22.6 0.0 0.27 10.2 0.0 2.6 3 0 0 3 3 3 2 Flavin containing amine oxidoreductase TrkA_N PF02254.13 gi|57641234|ref|YP_183712.1| - 7.5e-05 22.7 2.0 0.11 12.5 0.7 3.2 2 1 0 2 2 2 1 TrkA-N domain GIDA PF01134.17 gi|57641234|ref|YP_183712.1| - 0.00015 20.7 5.9 0.14 10.9 0.1 3.8 3 1 2 5 5 5 2 Glucose inhibited division protein A FAD_binding_2 PF00890.19 gi|57641234|ref|YP_183712.1| - 0.0002 20.3 1.6 0.054 12.3 0.0 2.7 2 1 0 3 3 3 1 FAD binding domain UDPG_MGDP_dh_N PF03721.9 gi|57641234|ref|YP_183712.1| - 0.0013 18.1 0.2 0.0029 17.0 0.1 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AlaDh_PNT_C PF01262.16 gi|57641234|ref|YP_183712.1| - 0.0046 16.5 1.2 2.6 7.5 0.0 3.4 4 0 0 4 4 4 1 Alanine dehydrogenase/PNT, C-terminal domain Shikimate_DH PF01488.15 gi|57641234|ref|YP_183712.1| - 0.0055 16.7 1.0 0.6 10.2 0.3 3.1 3 1 0 3 3 3 1 Shikimate / quinate 5-dehydrogenase adh_short PF00106.20 gi|57641234|ref|YP_183712.1| - 0.0057 16.5 0.1 0.012 15.5 0.1 1.5 1 0 0 1 1 1 1 short chain dehydrogenase Mqo PF06039.10 gi|57641234|ref|YP_183712.1| - 0.0072 14.5 0.0 0.012 13.8 0.0 1.3 1 0 0 1 1 1 1 Malate:quinone oxidoreductase (Mqo) F420_oxidored PF03807.12 gi|57641234|ref|YP_183712.1| - 0.011 16.1 0.1 0.12 12.7 0.0 2.4 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent Trp_halogenase PF04820.9 gi|57641234|ref|YP_183712.1| - 0.011 14.3 0.8 0.26 9.8 0.1 2.4 2 1 0 2 2 2 0 Tryptophan halogenase NAD_binding_2 PF03446.10 gi|57641234|ref|YP_183712.1| - 0.012 15.5 0.0 0.1 12.3 0.0 2.2 2 0 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_Gly3P_dh_N PF01210.18 gi|57641234|ref|YP_183712.1| - 0.023 14.4 0.1 0.78 9.4 0.0 2.5 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus GFO_IDH_MocA PF01408.17 gi|57641234|ref|YP_183712.1| - 0.064 13.7 0.0 1.2 9.6 0.0 2.4 2 0 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold NAD_binding_10 PF13460.1 gi|57641234|ref|YP_183712.1| - 0.068 13.1 2.9 0.15 12.0 0.0 2.8 4 0 0 4 4 3 0 NADH(P)-binding FAD_binding_3 PF01494.14 gi|57641234|ref|YP_183712.1| - 0.088 11.8 0.7 6.7 5.6 0.1 2.8 3 0 0 3 3 3 0 FAD binding domain 2-Hacid_dh_C PF02826.14 gi|57641234|ref|YP_183712.1| - 0.089 11.9 0.1 11 5.0 0.0 2.3 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ApbA PF02558.11 gi|57641234|ref|YP_183712.1| - 0.12 11.8 0.2 0.32 10.4 0.0 1.9 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA Ion_trans_2 PF07885.11 gi|57641235|ref|YP_183713.1| - 9.9e-15 54.0 4.7 1.8e-14 53.2 3.3 1.4 1 0 0 1 1 1 1 Ion channel zf-TRM13_CCCH PF11722.3 gi|57641235|ref|YP_183713.1| - 0.0056 16.0 0.1 0.011 15.1 0.1 1.5 1 0 0 1 1 1 1 CCCH zinc finger in TRM13 protein zf-C3Hc3H PF13891.1 gi|57641235|ref|YP_183713.1| - 0.0078 16.2 0.0 0.012 15.6 0.0 1.3 1 0 0 1 1 1 1 Potential DNA-binding domain Pentapeptide_4 PF13599.1 gi|57641235|ref|YP_183713.1| - 0.039 13.7 0.1 0.29 10.9 0.0 2.5 3 0 0 3 3 3 0 Pentapeptide repeats (9 copies) TPR_7 PF13176.1 gi|57641235|ref|YP_183713.1| - 0.059 13.1 0.2 0.14 11.9 0.1 1.6 1 0 0 1 1 1 0 Tetratricopeptide repeat NAD_kinase PF01513.16 gi|57641236|ref|YP_183714.1| - 4.6e-65 219.2 0.2 5.2e-65 219.0 0.1 1.0 1 0 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.19 gi|57641236|ref|YP_183714.1| - 0.0011 18.4 1.9 0.0027 17.1 0.1 2.6 3 1 1 4 4 4 1 Diacylglycerol kinase catalytic domain Cytochrom_B_N_2 PF13631.1 gi|57641237|ref|YP_183715.1| - 0.092 12.5 1.9 0.17 11.6 1.3 1.5 1 1 0 1 1 1 0 Cytochrome b(N-terminal)/b6/petB PIG-P PF08510.7 gi|57641237|ref|YP_183715.1| - 0.7 9.5 4.5 1.4 8.6 1.7 2.4 2 1 0 2 2 2 0 PIG-P GTP_EFTU PF00009.22 gi|57641240|ref|YP_183718.1| - 4.3e-30 104.5 0.2 5.1e-26 91.2 0.0 3.4 4 0 0 4 4 4 2 Elongation factor Tu GTP binding domain IF-2 PF11987.3 gi|57641240|ref|YP_183718.1| - 9.1e-25 86.6 4.6 1e-24 86.5 2.0 2.0 2 0 0 2 2 2 1 Translation-initiation factor 2 LAGLIDADG_3 PF14528.1 gi|57641240|ref|YP_183718.1| - 5.5e-19 68.1 0.8 5.5e-19 68.1 0.6 3.9 5 0 0 5 5 5 1 LAGLIDADG-like domain GTP_EFTU_D4 PF14578.1 gi|57641240|ref|YP_183718.1| - 4.4e-17 61.4 1.2 2.2e-16 59.2 0.8 2.3 1 0 0 1 1 1 1 Elongation factor Tu domain 4 GTP_EFTU_D2 PF03144.20 gi|57641240|ref|YP_183718.1| - 5.5e-16 58.4 13.9 1.6e-13 50.5 0.2 4.1 5 0 0 5 5 5 2 Elongation factor Tu domain 2 Intein_splicing PF14890.1 gi|57641240|ref|YP_183718.1| - 1.1e-11 44.2 0.0 1.2e-06 27.6 0.0 2.7 2 1 0 2 2 2 2 Intein splicing domain LAGLIDADG_WhiA PF14527.1 gi|57641240|ref|YP_183718.1| - 0.0026 17.6 0.1 0.029 14.2 0.0 2.8 2 0 0 2 2 2 1 WhiA LAGLIDADG-like domain MMR_HSR1 PF01926.18 gi|57641240|ref|YP_183718.1| - 0.031 14.2 0.0 0.14 12.1 0.0 2.2 1 0 0 1 1 1 0 50S ribosome-binding GTPase DUF1469 PF07332.6 gi|57641241|ref|YP_183719.1| - 0.11 12.2 0.2 0.11 12.2 0.1 3.3 3 1 1 4 4 4 0 Protein of unknown function (DUF1469) NDK PF00334.14 gi|57641242|ref|YP_183720.1| - 5.8e-57 191.2 0.0 8.1e-57 190.7 0.0 1.2 1 0 0 1 1 1 1 Nucleoside diphosphate kinase Ribosomal_L24e PF01246.15 gi|57641244|ref|YP_183722.1| - 4.4e-27 93.7 2.2 4.7e-27 93.6 1.5 1.0 1 0 0 1 1 1 1 Ribosomal protein L24e zf-FCS PF06467.9 gi|57641244|ref|YP_183722.1| - 0.00036 20.1 2.1 0.00054 19.5 1.4 1.3 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif YHS PF04945.8 gi|57641244|ref|YP_183722.1| - 0.023 14.5 1.1 0.031 14.1 0.4 1.4 1 1 0 1 1 1 0 YHS domain zf-C2HC_2 PF13913.1 gi|57641244|ref|YP_183722.1| - 0.047 13.3 0.3 0.047 13.3 0.2 1.9 2 0 0 2 2 2 0 zinc-finger of a C2HC-type zf-CHCC PF10276.4 gi|57641244|ref|YP_183722.1| - 0.047 13.5 0.2 0.091 12.6 0.1 1.5 1 0 0 1 1 1 0 Zinc-finger domain Arc_trans_TRASH PF08394.5 gi|57641244|ref|YP_183722.1| - 0.048 13.8 0.7 0.13 12.4 0.5 1.7 1 1 0 1 1 1 0 Archaeal TRASH domain zinc_ribbon_2 PF13240.1 gi|57641244|ref|YP_183722.1| - 0.081 12.4 0.1 0.081 12.4 0.0 1.9 2 1 0 1 1 1 0 zinc-ribbon domain Ribosomal_S28e PF01200.13 gi|57641245|ref|YP_183723.1| - 1.4e-30 104.7 6.8 1.5e-30 104.6 4.7 1.0 1 0 0 1 1 1 1 Ribosomal protein S28e KOW PF00467.24 gi|57641245|ref|YP_183723.1| - 0.24 11.1 3.9 0.6 9.9 0.1 2.8 3 1 0 3 3 3 0 KOW motif Ribosomal_L7Ae PF01248.21 gi|57641246|ref|YP_183724.1| - 6.9e-33 112.0 0.1 8.5e-33 111.7 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family PELOTA_1 PF15608.1 gi|57641246|ref|YP_183724.1| - 0.0025 17.5 0.1 0.0035 17.0 0.0 1.3 1 0 0 1 1 1 1 PELOTA RNA binding domain eRF1_3 PF03465.10 gi|57641246|ref|YP_183724.1| - 0.018 15.3 0.0 0.019 15.2 0.0 1.3 1 0 0 1 1 1 0 eRF1 domain 3 V4R PF02830.13 gi|57641247|ref|YP_183725.1| - 3.7e-15 55.5 0.1 6e-15 54.8 0.1 1.3 1 0 0 1 1 1 1 V4R domain KaiC PF06745.8 gi|57641247|ref|YP_183725.1| - 2.1e-13 49.9 0.0 2.9e-13 49.4 0.0 1.2 1 0 0 1 1 1 1 KaiC Pneumo_matrix PF03393.11 gi|57641247|ref|YP_183725.1| - 0.062 12.2 0.0 0.24 10.2 0.0 1.8 1 1 1 2 2 2 0 Pneumovirus matrix protein TF_Zn_Ribbon PF08271.7 gi|57641248|ref|YP_183726.1| - 6.6e-05 22.1 0.8 6.6e-05 22.1 0.6 1.8 2 0 0 2 2 2 1 TFIIB zinc-binding Zn_Tnp_IS1595 PF12760.2 gi|57641248|ref|YP_183726.1| - 0.00042 20.0 0.3 0.00073 19.2 0.2 1.4 1 0 0 1 1 1 1 Transposase zinc-ribbon domain Lar_restr_allev PF14354.1 gi|57641248|ref|YP_183726.1| - 0.0011 19.1 0.2 0.002 18.4 0.1 1.5 1 0 0 1 1 1 1 Restriction alleviation protein Lar UPF0547 PF10571.4 gi|57641248|ref|YP_183726.1| - 0.0032 17.1 3.8 0.21 11.3 0.3 2.4 2 0 0 2 2 2 1 Uncharacterised protein family UPF0547 zinc_ribbon_5 PF13719.1 gi|57641248|ref|YP_183726.1| - 0.0045 16.5 3.7 0.018 14.6 2.0 2.4 2 1 0 2 2 1 1 zinc-ribbon domain eIF-5_eIF-2B PF01873.12 gi|57641248|ref|YP_183726.1| - 0.0062 16.1 0.2 0.01 15.4 0.2 1.4 1 0 0 1 1 1 1 Domain found in IF2B/IF5 OrfB_Zn_ribbon PF07282.6 gi|57641248|ref|YP_183726.1| - 0.0066 16.0 1.5 0.013 15.1 1.1 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain zinc_ribbon_4 PF13717.1 gi|57641248|ref|YP_183726.1| - 0.0091 15.6 3.4 0.037 13.7 1.8 2.5 2 1 0 2 2 2 1 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|57641248|ref|YP_183726.1| - 0.015 15.2 2.4 0.99 9.4 0.2 2.3 1 1 0 2 2 2 0 Zinc ribbon domain Elf1 PF05129.8 gi|57641248|ref|YP_183726.1| - 0.022 14.4 0.1 0.042 13.5 0.1 1.5 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like DUF951 PF06107.6 gi|57641248|ref|YP_183726.1| - 0.024 14.1 0.6 0.073 12.5 0.1 2.0 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF951) FdhE PF04216.7 gi|57641248|ref|YP_183726.1| - 0.03 14.0 0.6 0.042 13.5 0.4 1.2 1 0 0 1 1 1 0 Protein involved in formate dehydrogenase formation HypA PF01155.14 gi|57641248|ref|YP_183726.1| - 0.03 14.0 0.6 1.7 8.3 0.1 2.6 1 1 1 2 2 2 0 Hydrogenase expression/synthesis hypA family ADK_lid PF05191.9 gi|57641248|ref|YP_183726.1| - 0.041 13.5 0.8 1.3 8.7 0.0 2.3 2 0 0 2 2 2 0 Adenylate kinase, active site lid PhnA_Zn_Ribbon PF08274.7 gi|57641248|ref|YP_183726.1| - 0.047 13.4 0.8 0.047 13.4 0.5 2.3 2 0 0 2 2 2 0 PhnA Zinc-Ribbon TFIIS_C PF01096.13 gi|57641248|ref|YP_183726.1| - 0.065 12.8 3.8 2.5 7.7 2.7 2.3 1 1 0 1 1 1 0 Transcription factor S-II (TFIIS) DUF35_N PF12172.3 gi|57641248|ref|YP_183726.1| - 0.069 13.0 2.0 7.6 6.5 0.0 2.4 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-ribbon_3 PF13248.1 gi|57641248|ref|YP_183726.1| - 0.085 12.0 0.6 1.1 8.5 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DUF2296 PF10058.4 gi|57641248|ref|YP_183726.1| - 0.086 12.5 0.3 0.17 11.6 0.2 1.5 1 0 0 1 1 1 0 Predicted integral membrane metal-binding protein (DUF2296) DUF2387 PF09526.5 gi|57641248|ref|YP_183726.1| - 0.19 11.6 0.6 0.34 10.8 0.1 1.8 2 0 0 2 2 2 0 Probable metal-binding protein (DUF2387) zf-NADH-PPase PF09297.6 gi|57641248|ref|YP_183726.1| - 0.35 10.4 3.4 2.9 7.4 2.4 2.1 1 1 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain DNA_ligase_ZBD PF03119.11 gi|57641248|ref|YP_183726.1| - 0.41 10.3 3.9 1.7 8.4 2.7 2.1 1 1 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain Ribosomal_L44 PF00935.14 gi|57641248|ref|YP_183726.1| - 0.47 10.5 2.2 1.1 9.2 0.0 2.6 2 1 1 3 3 3 0 Ribosomal protein L44 DNA_RNApol_7kD PF03604.8 gi|57641248|ref|YP_183726.1| - 0.86 9.1 4.4 4.2 6.9 3.1 2.1 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit Nudix_N_2 PF14803.1 gi|57641248|ref|YP_183726.1| - 0.98 9.1 3.2 4.2 7.1 2.2 2.2 1 1 0 1 1 1 0 Nudix N-terminal Ogr_Delta PF04606.7 gi|57641248|ref|YP_183726.1| - 1.2 8.8 5.2 0.74 9.5 1.3 2.3 2 1 0 2 2 2 0 Ogr/Delta-like zinc finger zinc_ribbon_2 PF13240.1 gi|57641248|ref|YP_183726.1| - 2.3 7.8 4.7 1.1 8.7 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain AAA_14 PF13173.1 gi|57641249|ref|YP_183727.1| - 1.2e-33 115.6 0.0 3.6e-33 114.1 0.0 1.7 2 0 0 2 2 2 1 AAA domain DUF4143 PF13635.1 gi|57641249|ref|YP_183727.1| - 1.6e-10 41.0 0.0 2.9e-10 40.1 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4143) Arch_ATPase PF01637.13 gi|57641249|ref|YP_183727.1| - 0.003 17.2 0.1 0.042 13.5 0.0 2.2 1 1 0 2 2 2 1 Archaeal ATPase TrmB PF01978.14 gi|57641249|ref|YP_183727.1| - 0.28 10.9 3.2 0.91 9.2 0.0 2.9 3 0 0 3 3 3 0 Sugar-specific transcriptional regulator TrmB PAPS_reduct PF01507.14 gi|57641250|ref|YP_183728.1| - 3.7e-45 153.8 0.0 9e-45 152.5 0.0 1.7 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family PUA PF01472.15 gi|57641250|ref|YP_183728.1| - 1.4e-18 66.3 0.7 3.6e-18 65.0 0.5 1.7 1 0 0 1 1 1 1 PUA domain Fer4_7 PF12838.2 gi|57641250|ref|YP_183728.1| - 5.1e-11 42.7 9.7 1.5e-10 41.2 6.7 1.8 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|57641250|ref|YP_183728.1| - 4.4e-09 35.5 14.0 9.4e-05 21.8 3.0 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|57641250|ref|YP_183728.1| - 6.8e-08 32.6 8.7 2.2e-07 31.0 6.0 2.0 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|57641250|ref|YP_183728.1| - 3e-07 30.6 3.7 0.0088 16.3 0.1 2.9 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|57641250|ref|YP_183728.1| - 1.6e-06 27.8 9.2 4.6e-06 26.3 6.4 1.8 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|57641250|ref|YP_183728.1| - 1.4e-05 24.8 7.0 1.4e-05 24.8 4.9 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|57641250|ref|YP_183728.1| - 3.3e-05 23.8 12.1 8.4e-05 22.5 7.2 2.5 2 1 2 4 4 3 3 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|57641250|ref|YP_183728.1| - 7.8e-05 22.3 13.9 0.00046 19.9 2.0 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|57641250|ref|YP_183728.1| - 0.00014 21.5 16.4 0.0013 18.5 2.2 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|57641250|ref|YP_183728.1| - 0.00015 22.1 4.5 0.34 11.3 0.0 2.9 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|57641250|ref|YP_183728.1| - 0.00069 19.4 2.5 0.0016 18.2 1.7 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|57641250|ref|YP_183728.1| - 0.0023 18.1 1.8 0.0023 18.1 1.2 3.1 4 0 0 4 4 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|57641250|ref|YP_183728.1| - 0.0031 18.2 13.8 0.21 12.3 7.5 3.5 2 1 2 4 4 4 3 4Fe-4S double cluster binding domain Fer4_15 PF13459.1 gi|57641250|ref|YP_183728.1| - 0.11 13.0 10.0 0.85 10.2 1.3 3.2 3 0 0 3 3 3 0 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|57641250|ref|YP_183728.1| - 0.45 10.9 7.1 5.1 7.5 0.8 2.7 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|57641250|ref|YP_183728.1| - 9.5 7.0 23.4 1.5 9.5 3.9 3.1 3 0 0 3 3 3 0 4Fe-4S binding domain Band_7 PF01145.20 gi|57641251|ref|YP_183729.1| - 3.2e-43 147.7 5.3 6.3e-43 146.7 3.7 1.5 1 1 0 1 1 1 1 SPFH domain / Band 7 family Band_7_1 PF13421.1 gi|57641251|ref|YP_183729.1| - 0.005 16.3 0.1 0.0084 15.6 0.1 1.4 1 0 0 1 1 1 1 SPFH domain-Band 7 family DUF3894 PF13033.1 gi|57641251|ref|YP_183729.1| - 0.037 14.0 0.0 0.081 12.9 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3894) NfeD PF01957.13 gi|57641252|ref|YP_183730.1| - 4.2e-17 62.6 7.2 4.7e-17 62.4 5.0 1.0 1 0 0 1 1 1 1 NfeD-like C-terminal, partner-binding DUF2929 PF11151.3 gi|57641252|ref|YP_183730.1| - 0.027 14.5 0.6 0.027 14.5 0.4 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2929) DUF3754 PF12576.3 gi|57641252|ref|YP_183730.1| - 0.054 13.1 1.1 0.075 12.6 0.7 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3754) ALS_ss_C PF10369.4 gi|57641252|ref|YP_183730.1| - 0.064 12.9 0.0 1.1 9.0 0.0 2.2 1 1 1 2 2 2 0 Small subunit of acetolactate synthase 7TM_GPCR_Srh PF10318.4 gi|57641252|ref|YP_183730.1| - 0.51 9.1 9.2 0.61 8.8 6.4 1.0 1 0 0 1 1 1 0 Serpentine type 7TM GPCR chemoreceptor Srh DUF2512 PF10710.4 gi|57641252|ref|YP_183730.1| - 0.79 9.1 6.2 1.2 8.6 4.3 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2512) MS_channel PF00924.13 gi|57641252|ref|YP_183730.1| - 1.7 7.9 7.4 14 4.9 0.1 2.1 2 0 0 2 2 2 0 Mechanosensitive ion channel DUF485 PF04341.7 gi|57641252|ref|YP_183730.1| - 3.3 7.4 8.1 5.3 6.8 5.6 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF485 TK PF00265.13 gi|57641253|ref|YP_183731.1| - 4.8e-51 172.8 0.0 5.5e-51 172.6 0.0 1.0 1 0 0 1 1 1 1 Thymidine kinase AAA_14 PF13173.1 gi|57641253|ref|YP_183731.1| - 2e-05 24.4 0.0 3.7e-05 23.6 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|57641253|ref|YP_183731.1| - 0.026 14.6 0.0 0.087 12.9 0.0 1.9 1 1 0 1 1 1 0 AAA domain Ribosomal_L39 PF00832.15 gi|57641254|ref|YP_183732.1| - 2.4e-23 81.3 14.1 2.8e-23 81.0 9.8 1.1 1 0 0 1 1 1 1 Ribosomal L39 protein Ribosomal_L31e PF01198.14 gi|57641255|ref|YP_183733.1| - 1.4e-21 75.8 3.9 1.7e-21 75.6 2.7 1.0 1 0 0 1 1 1 1 Ribosomal protein L31e F420_ligase PF01996.11 gi|57641255|ref|YP_183733.1| - 0.082 11.9 0.1 0.096 11.7 0.0 1.2 1 0 0 1 1 1 0 F420-0:Gamma-glutamyl ligase eIF-6 PF01912.13 gi|57641256|ref|YP_183734.1| - 4.9e-72 241.1 0.0 6.1e-72 240.8 0.0 1.1 1 0 0 1 1 1 1 eIF-6 family Ribosomal_L18ae PF01775.12 gi|57641257|ref|YP_183735.1| - 1.2e-11 44.6 0.1 1.4e-11 44.3 0.0 1.1 1 0 0 1 1 1 1 Ribosomal L18ae/LX protein domain Glycos_transf_1 PF00534.15 gi|57641258|ref|YP_183736.1| - 5.2e-51 172.4 0.0 7.7e-51 171.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|57641258|ref|YP_183736.1| - 3.6e-37 127.7 0.0 7.3e-37 126.7 0.0 1.5 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.1 gi|57641258|ref|YP_183736.1| - 1.9e-21 76.6 0.0 5.2e-21 75.2 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|57641258|ref|YP_183736.1| - 7.3e-14 51.8 0.0 6.9e-12 45.4 0.0 2.3 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|57641258|ref|YP_183736.1| - 4.7e-11 43.0 0.0 3.9e-10 40.1 0.0 2.2 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_transf_5 PF08323.6 gi|57641258|ref|YP_183736.1| - 2.1e-08 33.9 1.0 0.00011 21.7 0.0 2.3 2 0 0 2 2 2 2 Starch synthase catalytic domain Glyco_trans_4_2 PF13477.1 gi|57641258|ref|YP_183736.1| - 0.00013 21.7 0.1 0.00033 20.5 0.1 1.8 1 0 0 1 1 1 1 Glycosyl transferase 4-like PIGA PF08288.7 gi|57641258|ref|YP_183736.1| - 0.0076 16.5 0.7 0.019 15.3 0.5 1.6 1 0 0 1 1 1 1 PIGA (GPI anchor biosynthesis) Peripla_BP_4 PF13407.1 gi|57641258|ref|YP_183736.1| - 0.11 11.8 0.2 0.3 10.4 0.1 1.6 1 1 0 1 1 1 0 Periplasmic binding protein domain UbiA PF01040.13 gi|57641259|ref|YP_183737.1| - 1.7e-36 125.7 17.2 2.2e-36 125.4 12.0 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family DUF4199 PF13858.1 gi|57641259|ref|YP_183737.1| - 1.8 8.4 7.2 0.44 10.4 0.2 3.0 2 1 0 2 2 2 0 Protein of unknown function (DUF4199) Tetraspannin PF00335.15 gi|57641259|ref|YP_183737.1| - 6 6.0 9.4 1.9 7.7 3.2 2.2 2 1 0 2 2 2 0 Tetraspanin family Fer4_20 PF14691.1 gi|57641260|ref|YP_183738.1| - 1.8e-38 130.5 1.0 3e-38 129.8 0.7 1.3 1 0 0 1 1 1 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Pyr_redox_2 PF07992.9 gi|57641260|ref|YP_183738.1| - 3.3e-25 89.1 9.5 6.4e-10 39.2 0.2 3.9 2 2 1 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|57641260|ref|YP_183738.1| - 2.1e-17 63.2 8.8 6.5e-09 36.0 0.5 3.8 3 1 0 3 3 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|57641260|ref|YP_183738.1| - 4.8e-14 52.9 0.1 1.1e-05 25.5 0.1 3.1 2 1 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|57641260|ref|YP_183738.1| - 8.8e-11 41.6 1.1 1e-08 35.0 0.0 2.5 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain AlaDh_PNT_C PF01262.16 gi|57641260|ref|YP_183738.1| - 1.7e-08 34.1 0.6 0.0047 16.4 0.1 2.7 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain Thi4 PF01946.12 gi|57641260|ref|YP_183738.1| - 1.1e-07 31.1 0.4 1.2e-05 24.5 0.1 2.3 2 0 0 2 2 2 1 Thi4 family 2-Hacid_dh_C PF02826.14 gi|57641260|ref|YP_183738.1| - 3.9e-07 29.3 0.5 0.0079 15.3 0.0 2.9 3 0 0 3 3 3 2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GIDA PF01134.17 gi|57641260|ref|YP_183738.1| - 4e-07 29.2 3.2 0.00035 19.5 0.0 2.9 3 1 1 4 4 4 2 Glucose inhibited division protein A Shikimate_DH PF01488.15 gi|57641260|ref|YP_183738.1| - 6.1e-07 29.6 4.0 0.026 14.5 0.2 3.6 3 1 0 3 3 3 2 Shikimate / quinate 5-dehydrogenase NAD_binding_7 PF13241.1 gi|57641260|ref|YP_183738.1| - 1.5e-06 28.3 3.5 0.0056 16.9 0.6 2.9 2 1 0 2 2 2 2 Putative NAD(P)-binding HI0933_like PF03486.9 gi|57641260|ref|YP_183738.1| - 1.6e-06 26.8 5.9 2.6e-05 22.8 0.3 2.6 3 0 0 3 3 3 2 HI0933-like protein FAD_binding_3 PF01494.14 gi|57641260|ref|YP_183738.1| - 2.9e-06 26.5 0.1 5e-05 22.5 0.0 2.1 2 0 0 2 2 2 1 FAD binding domain FAD_binding_2 PF00890.19 gi|57641260|ref|YP_183738.1| - 6.2e-06 25.3 6.7 0.00013 20.9 0.3 3.1 3 0 0 3 3 3 1 FAD binding domain IlvN PF07991.7 gi|57641260|ref|YP_183738.1| - 1.2e-05 24.7 0.3 0.022 14.1 0.0 2.5 2 0 0 2 2 2 2 Acetohydroxy acid isomeroreductase, catalytic domain DAO PF01266.19 gi|57641260|ref|YP_183738.1| - 2.5e-05 23.3 9.9 0.0001 21.3 0.5 3.8 2 1 1 3 3 3 1 FAD dependent oxidoreductase CPSase_L_chain PF00289.17 gi|57641260|ref|YP_183738.1| - 3.5e-05 23.8 0.2 0.013 15.6 0.1 2.8 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, N-terminal domain FMO-like PF00743.14 gi|57641260|ref|YP_183738.1| - 8.4e-05 20.9 0.0 0.0018 16.5 0.0 2.1 2 0 0 2 2 2 1 Flavin-binding monooxygenase-like Amino_oxidase PF01593.19 gi|57641260|ref|YP_183738.1| - 0.00012 21.3 3.0 0.0014 17.7 0.1 2.7 2 1 0 3 3 3 1 Flavin containing amine oxidoreductase FAD_oxidored PF12831.2 gi|57641260|ref|YP_183738.1| - 0.00019 20.6 3.4 0.018 14.1 0.0 2.7 3 0 0 3 3 3 2 FAD dependent oxidoreductase NAD_binding_9 PF13454.1 gi|57641260|ref|YP_183738.1| - 0.00039 20.2 0.8 0.016 15.0 0.2 2.5 2 0 0 2 2 2 1 FAD-NAD(P)-binding 3HCDH_N PF02737.13 gi|57641260|ref|YP_183738.1| - 0.00047 19.8 0.4 0.3 10.7 0.0 2.4 2 0 0 2 2 2 2 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain PALP PF00291.20 gi|57641260|ref|YP_183738.1| - 0.00061 19.1 0.1 0.041 13.0 0.0 2.6 2 1 0 2 2 2 1 Pyridoxal-phosphate dependent enzyme F420_oxidored PF03807.12 gi|57641260|ref|YP_183738.1| - 0.0011 19.3 5.1 0.36 11.3 0.6 3.6 3 1 0 3 3 2 1 NADP oxidoreductase coenzyme F420-dependent YjeF_N PF03853.10 gi|57641260|ref|YP_183738.1| - 0.0014 18.2 0.0 1.7 8.2 0.0 2.5 2 0 0 2 2 2 2 YjeF-related protein N-terminus DJ-1_PfpI PF01965.19 gi|57641260|ref|YP_183738.1| - 0.0017 17.8 0.0 0.15 11.5 0.0 2.9 1 1 0 2 2 2 1 DJ-1/PfpI family TrkA_N PF02254.13 gi|57641260|ref|YP_183738.1| - 0.0031 17.5 1.9 3.6 7.6 0.0 3.5 4 0 0 4 4 3 1 TrkA-N domain XdhC_C PF13478.1 gi|57641260|ref|YP_183738.1| - 0.0042 17.3 0.6 0.53 10.5 0.0 2.7 3 0 0 3 3 2 1 XdhC Rossmann domain NAD_Gly3P_dh_N PF01210.18 gi|57641260|ref|YP_183738.1| - 0.006 16.3 0.0 0.54 9.9 0.0 2.6 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_10 PF13460.1 gi|57641260|ref|YP_183738.1| - 0.0092 16.0 2.6 1.8 8.4 0.0 3.6 4 1 0 4 4 4 1 NADH(P)-binding UDPG_MGDP_dh_N PF03721.9 gi|57641260|ref|YP_183738.1| - 0.035 13.4 0.9 0.1 11.9 0.2 2.2 2 1 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain OTCace PF00185.19 gi|57641260|ref|YP_183738.1| - 0.045 13.6 0.0 0.14 12.0 0.0 1.9 1 0 0 1 1 1 0 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Fer4_9 PF13187.1 gi|57641260|ref|YP_183738.1| - 0.1 12.8 3.7 0.33 11.2 2.6 1.9 1 1 0 1 1 1 0 4Fe-4S dicluster domain Hydrolase_6 PF13344.1 gi|57641260|ref|YP_183738.1| - 0.14 12.1 0.0 0.85 9.5 0.0 2.4 2 1 0 2 2 1 0 Haloacid dehalogenase-like hydrolase Lycopene_cycl PF05834.7 gi|57641260|ref|YP_183738.1| - 0.14 11.0 1.7 0.24 10.2 0.2 2.0 2 0 0 2 2 2 0 Lycopene cyclase protein ApbA PF02558.11 gi|57641260|ref|YP_183738.1| - 0.2 11.0 2.0 0.77 9.1 0.3 2.6 3 1 0 3 3 2 0 Ketopantoate reductase PanE/ApbA PMAIP1 PF15150.1 gi|57641260|ref|YP_183738.1| - 0.96 9.2 5.4 6.5 6.6 0.1 2.9 3 0 0 3 3 2 0 Phorbol-12-myristate-13-acetate-induced DHODB_Fe-S_bind PF10418.4 gi|57641261|ref|YP_183739.1| - 1.6e-09 37.1 3.2 2.4e-09 36.5 2.2 1.3 1 0 0 1 1 1 1 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B FAD_binding_6 PF00970.19 gi|57641261|ref|YP_183739.1| - 0.00013 22.0 0.0 0.00022 21.3 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase FAD-binding domain Peptidase_C15 PF01470.12 gi|57641261|ref|YP_183739.1| - 0.078 12.8 0.0 0.13 12.0 0.0 1.3 1 0 0 1 1 1 0 Pyroglutamyl peptidase Fer2_3 PF13085.1 gi|57641261|ref|YP_183739.1| - 0.14 11.9 0.2 0.27 11.0 0.1 1.4 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain TctB PF07331.6 gi|57641262|ref|YP_183740.1| - 0.012 15.2 2.0 0.016 14.8 1.4 1.1 1 0 0 1 1 1 0 Tripartite tricarboxylate transporter TctB family Reticulon PF02453.12 gi|57641262|ref|YP_183740.1| - 0.031 13.8 0.2 0.053 13.1 0.1 1.4 1 1 0 1 1 1 0 Reticulon TerC PF03741.11 gi|57641262|ref|YP_183740.1| - 0.2 11.0 0.9 0.23 10.8 0.6 1.1 1 0 0 1 1 1 0 Integral membrane protein TerC family GCD14 PF08704.5 gi|57641263|ref|YP_183741.1| - 3.8e-28 98.6 0.0 1.3e-26 93.5 0.0 2.0 1 1 1 2 2 2 1 tRNA methyltransferase complex GCD14 subunit Methyltransf_18 PF12847.2 gi|57641263|ref|YP_183741.1| - 1.6e-11 44.7 0.0 2.8e-11 43.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|57641263|ref|YP_183741.1| - 5.4e-11 42.2 0.0 7.5e-11 41.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|57641263|ref|YP_183741.1| - 2.5e-10 40.2 0.0 3e-10 39.9 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_26 PF13659.1 gi|57641263|ref|YP_183741.1| - 6.4e-10 39.0 0.0 1.3e-09 38.0 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|57641263|ref|YP_183741.1| - 4.4e-07 29.1 0.0 6.3e-07 28.6 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Ubie_methyltran PF01209.13 gi|57641263|ref|YP_183741.1| - 5.5e-06 25.6 0.0 8.7e-06 25.0 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family MTS PF05175.9 gi|57641263|ref|YP_183741.1| - 1.7e-05 24.2 0.0 3.2e-05 23.3 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase small domain Met_10 PF02475.11 gi|57641263|ref|YP_183741.1| - 0.0002 21.0 0.0 0.00031 20.3 0.0 1.3 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_3 PF01596.12 gi|57641263|ref|YP_183741.1| - 0.0004 19.4 0.0 0.00057 18.9 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_11 PF08241.7 gi|57641263|ref|YP_183741.1| - 0.0004 20.8 0.0 0.002 18.5 0.0 2.0 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|57641263|ref|YP_183741.1| - 0.0016 18.2 0.0 0.0062 16.2 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_16 PF10294.4 gi|57641263|ref|YP_183741.1| - 0.0026 17.2 0.0 0.0041 16.5 0.0 1.3 1 0 0 1 1 1 1 Putative methyltransferase Methyltransf_24 PF13578.1 gi|57641263|ref|YP_183741.1| - 0.0026 18.5 0.0 0.0062 17.3 0.0 1.6 2 0 0 2 2 1 1 Methyltransferase domain PrmA PF06325.8 gi|57641263|ref|YP_183741.1| - 0.0031 16.6 0.0 0.0042 16.2 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) UPF0020 PF01170.13 gi|57641263|ref|YP_183741.1| - 0.0032 17.0 0.0 0.013 15.1 0.0 1.9 1 1 1 2 2 2 1 Putative RNA methylase family UPF0020 Methyltransf_12 PF08242.7 gi|57641263|ref|YP_183741.1| - 0.0045 17.4 0.0 0.013 15.9 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain CMAS PF02353.15 gi|57641263|ref|YP_183741.1| - 0.0087 15.1 0.0 0.014 14.5 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_25 PF13649.1 gi|57641263|ref|YP_183741.1| - 0.016 15.5 0.0 0.031 14.6 0.0 1.6 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_32 PF13679.1 gi|57641263|ref|YP_183741.1| - 0.14 11.8 0.0 0.22 11.1 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain FtsJ PF01728.14 gi|57641263|ref|YP_183741.1| - 0.16 11.9 0.0 1.3 8.9 0.0 2.0 1 1 0 1 1 1 0 FtsJ-like methyltransferase DUF257 PF03192.8 gi|57641264|ref|YP_183742.1| - 3.2e-43 147.4 1.2 3.8e-43 147.2 0.8 1.0 1 0 0 1 1 1 1 Pyrococcus protein of unknown function, DUF257 SRP19 PF01922.12 gi|57641265|ref|YP_183743.1| - 3.6e-19 69.1 0.0 4.5e-19 68.8 0.0 1.1 1 0 0 1 1 1 1 SRP19 protein AsnC_trans_reg PF01037.16 gi|57641266|ref|YP_183744.1| - 4e-17 61.6 0.3 4.4e-17 61.5 0.2 1.0 1 0 0 1 1 1 1 AsnC family ACT_4 PF13291.1 gi|57641266|ref|YP_183744.1| - 0.0028 17.9 0.3 1.1 9.5 0.0 2.2 2 0 0 2 2 2 2 ACT domain NapD PF03927.8 gi|57641266|ref|YP_183744.1| - 0.0035 17.1 0.6 0.014 15.2 0.4 1.8 1 1 0 1 1 1 1 NapD protein DEAD PF00270.24 gi|57641267|ref|YP_183745.1| - 6.3e-30 103.8 0.0 1.8e-29 102.3 0.0 1.8 2 0 0 2 2 2 1 DEAD/DEAH box helicase LAGLIDADG_3 PF14528.1 gi|57641267|ref|YP_183745.1| - 6e-18 64.8 6.3 9.4e-14 51.4 0.1 3.9 4 0 0 4 4 4 2 LAGLIDADG-like domain HHH_5 PF14520.1 gi|57641267|ref|YP_183745.1| - 5.2e-11 42.5 0.6 1.4e-10 41.1 0.0 2.1 2 0 0 2 2 2 1 Helix-hairpin-helix domain Hom_end PF05204.9 gi|57641267|ref|YP_183745.1| - 4.4e-07 29.8 0.0 0.00049 20.0 0.0 3.5 4 0 0 4 4 4 1 Homing endonuclease Hint_2 PF13403.1 gi|57641267|ref|YP_183745.1| - 1.3e-05 25.1 0.0 2.9e-05 24.0 0.0 1.6 1 0 0 1 1 1 1 Hint domain ResIII PF04851.10 gi|57641267|ref|YP_183745.1| - 1.4e-05 25.0 0.0 3.5e-05 23.7 0.0 1.7 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit DNA_pol_lambd_f PF10391.4 gi|57641267|ref|YP_183745.1| - 3.8e-05 23.1 0.0 0.00017 21.0 0.0 2.1 2 0 0 2 2 2 1 Fingers domain of DNA polymerase lambda HHH_2 PF12826.2 gi|57641267|ref|YP_183745.1| - 5.5e-05 22.9 0.0 0.00015 21.5 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix motif Hint PF01079.15 gi|57641267|ref|YP_183745.1| - 9.6e-05 21.6 0.0 0.00016 20.9 0.0 1.3 1 0 0 1 1 1 1 Hint module Helicase_C PF00271.26 gi|57641267|ref|YP_183745.1| - 0.00023 20.9 0.0 0.27 11.1 0.0 2.7 2 0 0 2 2 2 2 Helicase conserved C-terminal domain Cdd1 PF11731.3 gi|57641267|ref|YP_183745.1| - 0.00061 19.6 0.0 0.0026 17.6 0.0 2.0 1 0 0 1 1 1 1 Pathogenicity locus HHH PF00633.18 gi|57641267|ref|YP_183745.1| - 0.00062 19.3 0.0 0.16 11.7 0.0 2.8 2 0 0 2 2 2 1 Helix-hairpin-helix motif RNA_pol_A_CTD PF03118.10 gi|57641267|ref|YP_183745.1| - 0.011 15.0 0.0 0.11 11.8 0.0 2.6 2 0 0 2 2 2 0 Bacterial RNA polymerase, alpha chain C terminal domain DUF4260 PF14079.1 gi|57641268|ref|YP_183746.1| - 0.046 13.5 0.1 0.081 12.7 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4260) SdpI PF13630.1 gi|57641268|ref|YP_183746.1| - 6.6 6.5 7.1 9.4 6.0 0.7 2.2 1 1 1 2 2 2 0 SdpI/YhfL protein family AAA_18 PF13238.1 gi|57641269|ref|YP_183747.1| - 7.4e-17 61.8 0.1 1.2e-16 61.2 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|57641269|ref|YP_183747.1| - 3.9e-14 53.5 0.1 7.9e-14 52.5 0.1 1.5 1 1 1 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|57641269|ref|YP_183747.1| - 4.7e-10 39.5 0.0 6.3e-10 39.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.7 gi|57641269|ref|YP_183747.1| - 7.3e-05 21.9 0.0 0.00011 21.3 0.0 1.3 1 0 0 1 1 1 1 Zeta toxin AAA_28 PF13521.1 gi|57641269|ref|YP_183747.1| - 0.00059 19.8 0.9 0.003 17.5 0.0 2.1 2 1 0 2 2 2 1 AAA domain KTI12 PF08433.5 gi|57641269|ref|YP_183747.1| - 0.0023 17.2 0.3 0.0023 17.2 0.2 1.8 2 1 0 2 2 2 1 Chromatin associated protein KTI12 NTPase_1 PF03266.10 gi|57641269|ref|YP_183747.1| - 0.0028 17.3 2.4 0.25 11.0 1.7 2.5 1 1 0 1 1 1 1 NTPase AAA_22 PF13401.1 gi|57641269|ref|YP_183747.1| - 0.0047 17.0 0.2 0.0094 16.0 0.1 1.5 1 1 0 1 1 1 1 AAA domain APS_kinase PF01583.15 gi|57641269|ref|YP_183747.1| - 0.01 15.5 0.1 0.033 13.8 0.1 1.9 1 1 1 2 2 2 0 Adenylylsulphate kinase ATP_bind_2 PF03668.10 gi|57641269|ref|YP_183747.1| - 0.01 14.9 0.1 0.014 14.5 0.0 1.2 1 0 0 1 1 1 0 P-loop ATPase protein family ADK PF00406.17 gi|57641269|ref|YP_183747.1| - 0.015 15.1 0.0 0.018 14.9 0.0 1.2 1 0 0 1 1 1 0 Adenylate kinase Viral_helicase1 PF01443.13 gi|57641269|ref|YP_183747.1| - 0.02 14.3 0.0 0.024 14.1 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_14 PF13173.1 gi|57641269|ref|YP_183747.1| - 0.023 14.6 0.0 0.051 13.4 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|57641269|ref|YP_183747.1| - 0.023 14.6 0.4 0.06 13.3 0.3 1.7 1 1 0 1 1 1 0 AAA ATPase domain AAA_5 PF07728.9 gi|57641269|ref|YP_183747.1| - 0.026 14.2 0.4 0.063 13.0 0.3 1.7 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_19 PF13245.1 gi|57641269|ref|YP_183747.1| - 0.04 13.6 0.4 0.67 9.7 0.0 2.5 3 0 0 3 3 3 0 Part of AAA domain CPT PF07931.7 gi|57641269|ref|YP_183747.1| - 0.044 13.4 0.4 0.14 11.7 0.3 1.7 1 1 0 1 1 1 0 Chloramphenicol phosphotransferase-like protein ArgK PF03308.11 gi|57641269|ref|YP_183747.1| - 0.076 11.7 0.4 0.31 9.7 0.0 2.0 2 0 0 2 2 2 0 ArgK protein Zot PF05707.7 gi|57641269|ref|YP_183747.1| - 0.079 12.4 0.2 0.78 9.1 0.0 2.0 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) KaiC PF06745.8 gi|57641269|ref|YP_183747.1| - 0.14 11.2 0.9 1.6 7.7 0.1 2.6 1 1 2 3 3 3 0 KaiC RNA_binding PF01877.12 gi|57641270|ref|YP_183748.1| - 1.9e-29 102.0 0.1 2.2e-29 101.8 0.1 1.0 1 0 0 1 1 1 1 RNA binding ACOX PF01756.14 gi|57641270|ref|YP_183748.1| - 0.0079 15.5 0.0 0.014 14.7 0.0 1.4 2 0 0 2 2 2 1 Acyl-CoA oxidase ABC2_membrane_3 PF12698.2 gi|57641271|ref|YP_183749.1| - 1.3e-34 119.7 14.6 1.7e-34 119.4 10.1 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|57641271|ref|YP_183749.1| - 1.1e-31 109.7 2.5 1.7e-31 109.1 1.8 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|57641271|ref|YP_183749.1| - 3.8e-17 62.1 22.3 2.3e-16 59.6 9.5 2.4 3 0 0 3 3 3 2 ABC-2 type transporter ABC2_membrane_4 PF12730.2 gi|57641271|ref|YP_183749.1| - 2.2e-16 59.7 5.1 3.8e-16 58.9 3.5 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|57641271|ref|YP_183749.1| - 7.3e-07 28.6 14.5 7.3e-07 28.6 10.1 2.3 2 1 1 3 3 3 1 ABC-2 family transporter protein ABC_tran PF00005.22 gi|57641272|ref|YP_183750.1| - 5.5e-29 101.2 0.0 7.5e-29 100.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|57641272|ref|YP_183750.1| - 1.9e-11 44.4 0.0 7e-05 22.9 0.1 2.1 1 1 1 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|57641272|ref|YP_183750.1| - 1e-05 24.9 0.1 2.4e-05 23.7 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|57641272|ref|YP_183750.1| - 8.7e-05 21.7 0.0 0.17 10.8 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.1 gi|57641272|ref|YP_183750.1| - 0.0002 21.7 0.5 0.0003 21.1 0.3 1.4 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|57641272|ref|YP_183750.1| - 0.0024 17.1 0.2 1.5 7.9 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain ArgK PF03308.11 gi|57641272|ref|YP_183750.1| - 0.0082 14.9 0.3 0.018 13.8 0.1 1.6 2 0 0 2 2 2 1 ArgK protein AAA_17 PF13207.1 gi|57641272|ref|YP_183750.1| - 0.01 16.6 0.6 0.015 16.1 0.3 1.6 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|57641272|ref|YP_183750.1| - 0.012 15.6 0.0 0.013 15.4 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain AAA_22 PF13401.1 gi|57641272|ref|YP_183750.1| - 0.014 15.5 0.1 0.031 14.4 0.1 1.6 1 1 0 1 1 1 0 AAA domain SRP54 PF00448.17 gi|57641272|ref|YP_183750.1| - 0.017 14.5 0.0 0.068 12.6 0.0 1.8 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_30 PF13604.1 gi|57641272|ref|YP_183750.1| - 0.019 14.5 0.0 0.037 13.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain Rad17 PF03215.10 gi|57641272|ref|YP_183750.1| - 0.023 13.3 0.1 0.04 12.6 0.0 1.3 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA_18 PF13238.1 gi|57641272|ref|YP_183750.1| - 0.024 14.9 0.0 0.049 13.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|57641272|ref|YP_183750.1| - 0.072 12.5 0.0 0.14 11.5 0.0 1.5 2 0 0 2 2 2 0 AAA-like domain RTTN_N PF14726.1 gi|57641272|ref|YP_183750.1| - 0.085 13.4 0.0 0.24 11.9 0.0 1.7 1 1 0 1 1 1 0 Rotatin, an armadillo repeat protein, centriole functioning DUF258 PF03193.11 gi|57641272|ref|YP_183750.1| - 0.098 11.8 0.0 0.15 11.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 Thymidylate_kin PF02223.12 gi|57641272|ref|YP_183750.1| - 0.099 12.0 0.0 0.16 11.3 0.0 1.4 1 0 0 1 1 1 0 Thymidylate kinase AAA_28 PF13521.1 gi|57641272|ref|YP_183750.1| - 0.1 12.5 0.0 0.18 11.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain HTH_3 PF01381.17 gi|57641274|ref|YP_183752.1| - 3.2e-21 74.9 0.2 3.5e-21 74.8 0.2 1.0 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.2 gi|57641274|ref|YP_183752.1| - 1.4e-20 73.0 0.3 1.5e-20 72.9 0.2 1.0 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.1 gi|57641274|ref|YP_183752.1| - 5.6e-14 52.0 0.0 6.4e-14 51.8 0.0 1.0 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.1 gi|57641274|ref|YP_183752.1| - 7e-10 38.9 0.0 7.9e-10 38.8 0.0 1.0 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_25 PF13413.1 gi|57641274|ref|YP_183752.1| - 5.4e-09 35.5 0.5 1e-08 34.7 0.3 1.6 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_37 PF13744.1 gi|57641274|ref|YP_183752.1| - 4.4e-06 26.3 0.1 6.3e-06 25.9 0.1 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|57641274|ref|YP_183752.1| - 3.2e-05 23.4 0.3 4.6e-05 22.9 0.2 1.2 1 0 0 1 1 1 1 HTH domain Sigma70_r4 PF04545.11 gi|57641274|ref|YP_183752.1| - 3.7e-05 22.9 1.1 5.8e-05 22.3 0.6 1.4 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_23 PF13384.1 gi|57641274|ref|YP_183752.1| - 0.0001 21.8 0.0 0.00023 20.7 0.0 1.6 2 0 0 2 2 2 1 Homeodomain-like domain HTH_24 PF13412.1 gi|57641274|ref|YP_183752.1| - 0.00024 20.4 0.1 0.00046 19.5 0.1 1.5 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.1 gi|57641274|ref|YP_183752.1| - 0.00029 20.5 0.0 0.00071 19.3 0.0 1.6 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain MarR PF01047.17 gi|57641274|ref|YP_183752.1| - 0.00052 19.6 0.0 0.0024 17.5 0.0 1.8 2 0 0 2 2 2 1 MarR family MarR_2 PF12802.2 gi|57641274|ref|YP_183752.1| - 0.00089 18.8 0.1 0.0013 18.3 0.1 1.2 1 0 0 1 1 1 1 MarR family HTH_38 PF13936.1 gi|57641274|ref|YP_183752.1| - 0.00097 18.6 0.4 0.0017 17.8 0.2 1.5 2 0 0 2 2 1 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|57641274|ref|YP_183752.1| - 0.0086 15.5 0.0 0.037 13.5 0.0 1.8 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_7 PF02796.10 gi|57641274|ref|YP_183752.1| - 0.0093 15.8 0.2 0.019 14.7 0.1 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain of resolvase RHH_1 PF01402.16 gi|57641274|ref|YP_183752.1| - 0.011 15.6 0.4 0.24 11.3 0.4 2.1 1 1 1 2 2 2 0 Ribbon-helix-helix protein, copG family HTH_20 PF12840.2 gi|57641274|ref|YP_183752.1| - 0.012 15.3 0.1 0.017 14.8 0.1 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_17 PF12728.2 gi|57641274|ref|YP_183752.1| - 0.013 15.7 0.0 0.018 15.2 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain GntR PF00392.16 gi|57641274|ref|YP_183752.1| - 0.014 14.8 0.2 0.027 13.8 0.1 1.5 1 1 1 2 2 2 0 Bacterial regulatory proteins, gntR family Crp PF00325.15 gi|57641274|ref|YP_183752.1| - 0.017 14.6 0.1 0.19 11.2 0.1 2.2 2 0 0 2 2 2 0 Bacterial regulatory proteins, crp family HTH_28 PF13518.1 gi|57641274|ref|YP_183752.1| - 0.024 14.6 0.2 0.044 13.7 0.0 1.5 2 0 0 2 2 1 0 Helix-turn-helix domain HTH_AsnC-type PF13404.1 gi|57641274|ref|YP_183752.1| - 0.027 13.9 0.3 0.038 13.5 0.2 1.2 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain CENP-B_N PF04218.8 gi|57641274|ref|YP_183752.1| - 0.028 13.8 0.0 0.052 12.9 0.0 1.4 1 0 0 1 1 1 0 CENP-B N-terminal DNA-binding domain HTH_10 PF04967.7 gi|57641274|ref|YP_183752.1| - 0.077 12.5 0.1 0.17 11.5 0.0 1.6 1 1 1 2 2 2 0 HTH DNA binding domain DUF1323 PF07037.6 gi|57641274|ref|YP_183752.1| - 0.082 13.0 0.0 0.1 12.7 0.0 1.2 1 0 0 1 1 1 0 Putative transcription regulator (DUF1323) MerR PF00376.18 gi|57641274|ref|YP_183752.1| - 0.094 12.2 0.0 0.43 10.1 0.0 2.0 2 0 0 2 2 2 0 MerR family regulatory protein Sigma70_ECF PF07638.6 gi|57641274|ref|YP_183752.1| - 0.14 11.8 0.1 0.19 11.3 0.1 1.3 1 0 0 1 1 1 0 ECF sigma factor DUF2178 PF09946.4 gi|57641275|ref|YP_183753.1| - 6.7e-08 32.2 0.0 8.5e-08 31.9 0.0 1.1 1 0 0 1 1 1 1 Predicted membrane protein (DUF2178) DUF2368 PF10166.4 gi|57641275|ref|YP_183753.1| - 0.0016 18.0 0.0 0.0017 17.9 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised conserved protein (DUF2368) PMT PF02366.13 gi|57641275|ref|YP_183753.1| - 0.0051 16.2 0.1 0.0058 16.0 0.0 1.1 1 0 0 1 1 1 1 Dolichyl-phosphate-mannose-protein mannosyltransferase ATP_synt_I PF03899.10 gi|57641275|ref|YP_183753.1| - 0.0074 16.4 0.1 0.01 15.9 0.1 1.2 1 0 0 1 1 1 1 ATP synthase I chain Abi PF02517.11 gi|57641275|ref|YP_183753.1| - 0.16 12.1 0.9 0.26 11.4 0.6 1.3 1 0 0 1 1 1 0 CAAX protease self-immunity DUF2178 PF09946.4 gi|57641276|ref|YP_183754.1| - 3e-10 39.8 2.5 3.5e-10 39.6 1.7 1.2 1 0 0 1 1 1 1 Predicted membrane protein (DUF2178) DUF4282 PF14110.1 gi|57641276|ref|YP_183754.1| - 0.0028 17.8 9.9 0.15 12.2 3.1 2.1 2 0 0 2 2 2 2 Domain of unknown function (DUF4282) O-antigen_lig PF13425.1 gi|57641276|ref|YP_183754.1| - 0.17 11.8 6.0 0.04 13.9 1.7 1.7 1 1 0 1 1 1 0 O-antigen ligase like membrane protein DUF2628 PF10947.3 gi|57641276|ref|YP_183754.1| - 1.8 8.4 5.6 5.1 6.9 1.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2628) DUF202 PF02656.10 gi|57641276|ref|YP_183754.1| - 1.9 8.7 7.6 9.1 6.5 0.7 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF202) Halogen_Hydrol PF10112.4 gi|57641276|ref|YP_183754.1| - 3.4 7.0 7.9 2.9 7.2 0.6 2.0 1 1 0 2 2 2 0 5-bromo-4-chloroindolyl phosphate hydrolysis protein DUF805 PF05656.9 gi|57641276|ref|YP_183754.1| - 4.9 7.0 6.5 6.6 6.5 0.5 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF805) RseC_MucC PF04246.7 gi|57641276|ref|YP_183754.1| - 6.5 6.3 5.9 1.7 8.1 0.7 2.0 1 1 1 2 2 2 0 Positive regulator of sigma(E), RseC/MucC PIN_3 PF13470.1 gi|57641278|ref|YP_183756.1| - 6.5e-14 52.6 0.0 9.2e-14 52.1 0.0 1.2 1 0 0 1 1 1 1 PIN domain PIN PF01850.16 gi|57641278|ref|YP_183756.1| - 0.016 15.5 0.8 0.19 12.0 0.5 2.1 1 1 0 1 1 1 0 PIN domain Baculo_p47 PF05112.7 gi|57641278|ref|YP_183756.1| - 0.03 13.7 0.3 0.04 13.2 0.2 1.1 1 0 0 1 1 1 0 Baculovirus P47 protein TMA7 PF09072.5 gi|57641279|ref|YP_183757.1| - 7.4 7.1 7.7 0.49 10.8 1.9 1.7 2 1 0 2 2 2 0 Translation machinery associated TMA7 JAB PF01398.16 gi|57641280|ref|YP_183758.1| - 0.11 12.2 0.0 0.2 11.4 0.0 1.3 1 0 0 1 1 1 0 JAB1/Mov34/MPN/PAD-1 ubiquitin protease Malic_M PF03949.10 gi|57641280|ref|YP_183758.1| - 0.11 11.9 0.1 0.22 11.0 0.0 1.4 1 0 0 1 1 1 0 Malic enzyme, NAD binding domain CBM_5_12_2 PF14600.1 gi|57641280|ref|YP_183758.1| - 0.14 11.8 0.1 0.14 11.8 0.1 2.6 3 0 0 3 3 3 0 Cellulose-binding domain YcbB PF08664.5 gi|57641284|ref|YP_183762.1| - 0.0014 18.4 0.4 0.0017 18.1 0.3 1.2 1 0 0 1 1 1 1 YcbB domain Uds1 PF15456.1 gi|57641285|ref|YP_183763.1| - 0.0094 15.9 0.1 0.013 15.5 0.0 1.2 1 0 0 1 1 1 1 Up-regulated During Septation HSBP1 PF06825.7 gi|57641285|ref|YP_183763.1| - 0.021 14.3 0.0 0.026 14.0 0.0 1.4 1 0 0 1 1 1 0 Heat shock factor binding protein 1 Matrilin_ccoil PF10393.4 gi|57641285|ref|YP_183763.1| - 0.024 14.0 0.2 0.036 13.4 0.1 1.4 1 0 0 1 1 1 0 Trimeric coiled-coil oligomerisation domain of matrilin DUF3373 PF11853.3 gi|57641285|ref|YP_183763.1| - 0.03 12.8 0.0 0.034 12.6 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3373) TMF_DNA_bd PF12329.3 gi|57641285|ref|YP_183763.1| - 0.034 13.9 0.1 0.034 13.9 0.1 1.1 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding NPV_P10 PF05531.7 gi|57641285|ref|YP_183763.1| - 0.04 14.1 0.0 0.044 14.0 0.0 1.2 1 0 0 1 1 1 0 Nucleopolyhedrovirus P10 protein DUF16 PF01519.11 gi|57641285|ref|YP_183763.1| - 0.063 13.5 0.5 0.12 12.5 0.3 1.6 1 1 0 1 1 1 0 Protein of unknown function DUF16 BLOC1_2 PF10046.4 gi|57641285|ref|YP_183763.1| - 0.063 13.4 0.1 0.07 13.2 0.1 1.1 1 0 0 1 1 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 NBP1 PF08537.5 gi|57641285|ref|YP_183763.1| - 0.076 12.2 0.1 0.084 12.0 0.1 1.0 1 0 0 1 1 1 0 Fungal Nap binding protein NBP1 Nsp1_C PF05064.8 gi|57641285|ref|YP_183763.1| - 0.083 12.5 0.0 0.095 12.3 0.0 1.0 1 0 0 1 1 1 0 Nsp1-like C-terminal region DUF3524 PF12038.3 gi|57641285|ref|YP_183763.1| - 0.12 11.9 0.0 0.14 11.7 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3524) XhlA PF10779.4 gi|57641285|ref|YP_183763.1| - 0.46 10.4 4.7 1.5 8.7 0.7 2.4 1 1 2 3 3 3 0 Haemolysin XhlA Phasin PF05597.6 gi|57641286|ref|YP_183764.1| - 0.062 13.0 0.2 0.24 11.1 0.0 1.8 2 0 0 2 2 2 0 Poly(hydroxyalcanoate) granule associated protein (phasin) Herpes_glycop_H PF02489.11 gi|57641286|ref|YP_183764.1| - 0.31 8.9 3.1 0.42 8.5 2.2 1.1 1 0 0 1 1 1 0 Herpesvirus glycoprotein H DUF1827 PF08860.5 gi|57641288|ref|YP_183766.1| - 0.064 13.3 0.3 2.1 8.5 0.0 2.8 2 1 1 3 3 3 0 Domain of unknown function (DUF1827) Tautomerase_2 PF14552.1 gi|57641289|ref|YP_183767.1| - 0.017 15.1 0.0 0.018 15.0 0.0 1.2 1 0 0 1 1 1 0 Tautomerase enzyme DuffyBP_N PF12377.3 gi|57641290|ref|YP_183768.1| - 0.028 14.6 0.0 0.038 14.1 0.0 1.1 1 0 0 1 1 1 0 Duffy binding protein N terminal Otopetrin PF03189.8 gi|57641290|ref|YP_183768.1| - 0.033 13.2 0.3 0.037 13.0 0.2 1.0 1 0 0 1 1 1 0 Otopetrin DUF485 PF04341.7 gi|57641290|ref|YP_183768.1| - 0.18 11.5 5.2 0.24 11.1 3.6 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF485 Ni_hydr_CYTB PF01292.15 gi|57641290|ref|YP_183768.1| - 0.24 10.7 2.9 0.27 10.6 2.0 1.1 1 0 0 1 1 1 0 Prokaryotic cytochrome b561 Sensor PF13796.1 gi|57641290|ref|YP_183768.1| - 2 8.0 10.7 0.37 10.3 1.2 2.0 2 0 0 2 2 2 0 Putative sensor AAA_10 PF12846.2 gi|57641291|ref|YP_183769.1| - 1.4e-15 57.5 0.1 1.5e-07 31.2 0.0 2.1 2 0 0 2 2 2 2 AAA-like domain Zot PF05707.7 gi|57641291|ref|YP_183769.1| - 1.2e-06 28.1 0.0 2.4e-05 23.9 0.0 2.3 2 1 0 2 2 2 1 Zonular occludens toxin (Zot) DUF87 PF01935.12 gi|57641291|ref|YP_183769.1| - 2e-05 24.5 0.0 4.1e-05 23.5 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function DUF87 AAA_22 PF13401.1 gi|57641291|ref|YP_183769.1| - 2.1e-05 24.6 0.0 6.4e-05 23.1 0.0 1.7 1 1 0 1 1 1 1 AAA domain TrwB_AAD_bind PF10412.4 gi|57641291|ref|YP_183769.1| - 0.00013 20.7 0.0 0.00021 20.0 0.0 1.2 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain FtsK_SpoIIIE PF01580.13 gi|57641291|ref|YP_183769.1| - 0.0014 18.1 0.0 0.013 14.9 0.0 2.0 2 0 0 2 2 2 1 FtsK/SpoIIIE family MobB PF03205.9 gi|57641291|ref|YP_183769.1| - 0.0047 16.6 0.0 0.036 13.7 0.0 2.0 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B DUF2791 PF10923.3 gi|57641291|ref|YP_183769.1| - 0.0047 15.5 0.0 0.0068 15.0 0.0 1.1 1 0 0 1 1 1 1 P-loop Domain of unknown function (DUF2791) Sigma54_activat PF00158.21 gi|57641291|ref|YP_183769.1| - 0.032 13.6 0.0 0.054 12.9 0.0 1.3 1 0 0 1 1 1 0 Sigma-54 interaction domain Torsin PF06309.6 gi|57641291|ref|YP_183769.1| - 0.043 13.7 0.0 0.13 12.1 0.0 1.8 2 0 0 2 2 2 0 Torsin AAA PF00004.24 gi|57641291|ref|YP_183769.1| - 0.051 13.7 0.0 0.27 11.4 0.0 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) KaiC PF06745.8 gi|57641291|ref|YP_183769.1| - 0.055 12.5 0.0 0.083 12.0 0.0 1.3 1 0 0 1 1 1 0 KaiC AAA_17 PF13207.1 gi|57641291|ref|YP_183769.1| - 0.073 13.9 0.8 0.31 11.8 0.6 2.2 1 1 0 1 1 1 0 AAA domain T2SE PF00437.15 gi|57641291|ref|YP_183769.1| - 0.089 11.6 0.0 0.67 8.8 0.0 2.0 2 0 0 2 2 2 0 Type II/IV secretion system protein CDKN3 PF05706.7 gi|57641291|ref|YP_183769.1| - 0.11 11.9 0.0 0.16 11.3 0.0 1.2 1 0 0 1 1 1 0 Cyclin-dependent kinase inhibitor 3 (CDKN3) V-SNARE PF05008.10 gi|57641292|ref|YP_183770.1| - 0.11 12.6 0.6 0.11 12.6 0.4 2.1 2 0 0 2 2 2 0 Vesicle transport v-SNARE protein N-terminus DUF1664 PF07889.7 gi|57641292|ref|YP_183770.1| - 0.23 11.2 0.8 0.36 10.6 0.5 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) BDV_P40 PF06407.6 gi|57641294|ref|YP_183772.1| - 0.046 12.5 0.0 0.05 12.4 0.0 1.1 1 0 0 1 1 1 0 Borna disease virus P40 protein TFIIS_C PF01096.13 gi|57641295|ref|YP_183773.1| - 0.017 14.7 0.7 0.4 10.3 0.1 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) HypA PF01155.14 gi|57641295|ref|YP_183773.1| - 0.15 11.7 0.4 0.27 10.9 0.2 1.3 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-C3HC4_3 PF13920.1 gi|57641295|ref|YP_183773.1| - 0.32 10.6 2.7 0.52 10.0 1.8 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) RRN7 PF11781.3 gi|57641295|ref|YP_183773.1| - 0.37 10.3 6.5 2.6 7.6 0.0 2.3 2 0 0 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 MCM PF00493.18 gi|57641296|ref|YP_183774.1| - 7.2e-93 310.9 0.0 1.5e-92 309.9 0.0 1.5 2 0 0 2 2 2 1 MCM2/3/5 family MCM_N PF14551.1 gi|57641296|ref|YP_183774.1| - 1.5e-13 51.2 0.2 1.1e-12 48.5 0.0 2.5 2 1 1 3 3 3 1 MCM N-terminal domain AAA_5 PF07728.9 gi|57641296|ref|YP_183774.1| - 9.4e-09 35.1 0.0 2.2e-08 33.8 0.0 1.6 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) Mg_chelatase PF01078.16 gi|57641296|ref|YP_183774.1| - 6.3e-08 32.0 0.1 0.00043 19.4 0.0 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Phage_CP76 PF06892.6 gi|57641296|ref|YP_183774.1| - 0.006 15.9 0.0 0.014 14.6 0.0 1.6 1 0 0 1 1 1 1 Phage regulatory protein CII (CP76) UBA_3 PF09288.5 gi|57641296|ref|YP_183774.1| - 0.014 14.9 0.1 0.063 12.8 0.0 2.2 2 0 0 2 2 1 0 Fungal ubiquitin-associated domain RuvB_N PF05496.7 gi|57641296|ref|YP_183774.1| - 0.018 14.0 0.8 0.26 10.2 0.2 2.7 2 1 0 2 2 2 0 Holliday junction DNA helicase ruvB N-terminus DUF1421 PF07223.6 gi|57641296|ref|YP_183774.1| - 0.019 14.7 0.0 0.029 14.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1421) AAA PF00004.24 gi|57641296|ref|YP_183774.1| - 0.027 14.6 0.6 0.22 11.6 0.4 2.6 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.21 gi|57641296|ref|YP_183774.1| - 0.035 13.5 0.4 0.54 9.7 0.1 2.4 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA_16 PF13191.1 gi|57641296|ref|YP_183774.1| - 0.043 13.8 1.5 0.83 9.6 0.1 3.1 2 1 1 3 3 3 0 AAA ATPase domain HypA PF01155.14 gi|57641296|ref|YP_183774.1| - 0.046 13.4 0.1 0.13 11.9 0.1 1.7 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Zeta_toxin PF06414.7 gi|57641296|ref|YP_183774.1| - 0.071 12.2 0.2 0.35 9.9 0.0 2.3 2 1 0 2 2 2 0 Zeta toxin AAA_22 PF13401.1 gi|57641296|ref|YP_183774.1| - 0.089 12.9 1.7 1.6 8.8 0.2 3.2 2 1 1 3 3 3 0 AAA domain Zn-ribbon_8 PF09723.5 gi|57641296|ref|YP_183774.1| - 0.096 12.6 0.1 0.22 11.4 0.1 1.6 1 0 0 1 1 1 0 Zinc ribbon domain AAA_3 PF07726.6 gi|57641296|ref|YP_183774.1| - 0.11 12.1 0.1 0.63 9.6 0.1 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) zf-IS66 PF13005.2 gi|57641296|ref|YP_183774.1| - 1.7 8.6 4.1 11 6.0 0.1 3.2 3 0 0 3 3 3 0 zinc-finger binding domain of transposase IS66 SOG2 PF10428.4 gi|57641297|ref|YP_183775.1| - 0.07 11.7 0.0 0.076 11.6 0.0 1.0 1 0 0 1 1 1 0 RAM signalling pathway protein YjgP_YjgQ PF03739.9 gi|57641297|ref|YP_183775.1| - 0.075 11.7 0.0 0.082 11.6 0.0 1.0 1 0 0 1 1 1 0 Predicted permease YjgP/YjgQ family DUF202 PF02656.10 gi|57641297|ref|YP_183775.1| - 0.14 12.3 0.4 0.23 11.7 0.3 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF202) SecD_SecF PF02355.11 gi|57641297|ref|YP_183775.1| - 0.17 11.0 1.1 0.22 10.6 0.7 1.3 1 1 0 1 1 1 0 Protein export membrane protein DUF3006 PF11213.3 gi|57641301|ref|YP_183779.1| - 0.056 13.2 0.3 0.085 12.6 0.2 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3006) DUF1652 PF07865.6 gi|57641302|ref|YP_183780.1| - 0.1 12.2 0.1 0.3 10.7 0.0 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF1652) Cas_Csa5 PF09702.5 gi|57641302|ref|YP_183780.1| - 0.12 12.5 0.0 0.15 12.1 0.0 1.2 1 0 0 1 1 1 0 CRISPR-associated protein (Cas_Csa5) DpnD-PcfM PF14207.1 gi|57641303|ref|YP_183781.1| - 0.14 11.9 0.1 0.18 11.5 0.0 1.2 1 0 0 1 1 1 0 DpnD/PcfM-like protein DUF2267 PF10025.4 gi|57641304|ref|YP_183782.1| - 0.023 14.7 0.3 0.028 14.4 0.2 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2267) DUF3826 PF12875.2 gi|57641304|ref|YP_183782.1| - 0.052 13.2 2.4 0.12 12.1 0.2 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF3826) Prenyltrans_1 PF13243.1 gi|57641304|ref|YP_183782.1| - 0.091 12.7 0.0 0.1 12.6 0.0 1.1 1 0 0 1 1 1 0 Prenyltransferase-like CcdA PF07362.7 gi|57641304|ref|YP_183782.1| - 0.12 12.2 1.5 0.17 11.7 0.2 1.8 2 0 0 2 2 2 0 Post-segregation antitoxin CcdA NUC130_3NT PF08158.7 gi|57641304|ref|YP_183782.1| - 0.13 12.5 0.8 0.47 10.7 0.1 2.1 2 0 0 2 2 2 0 NUC130/3NT domain DUF4132 PF13569.1 gi|57641304|ref|YP_183782.1| - 0.23 10.9 1.1 0.34 10.3 0.3 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4132) Glyco_trans_1_2 PF13524.1 gi|57641304|ref|YP_183782.1| - 0.76 10.0 2.9 1.8 8.8 0.3 2.0 2 0 0 2 2 2 0 Glycosyl transferases group 1 FlaC_arch PF05377.6 gi|57641304|ref|YP_183782.1| - 1.2 9.1 3.7 3.8 7.4 0.6 2.2 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) Nbs1_C PF08599.5 gi|57641304|ref|YP_183782.1| - 2.8 7.9 7.4 0.24 11.3 1.1 2.1 2 1 1 3 3 3 0 DNA damage repair protein Nbs1 DUF871 PF05913.6 gi|57641305|ref|YP_183783.1| - 0.053 12.3 0.0 0.065 12.0 0.0 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF871) Antitoxin-MazE PF04014.13 gi|57641307|ref|YP_183785.1| - 5.6e-07 29.1 0.5 7.5e-07 28.7 0.3 1.3 1 0 0 1 1 1 1 Antidote-toxin recognition MazE L27 PF02828.11 gi|57641308|ref|YP_183786.1| - 0.054 13.1 0.1 0.081 12.6 0.1 1.3 1 0 0 1 1 1 0 L27 domain TMF_DNA_bd PF12329.3 gi|57641309|ref|YP_183787.1| - 0.00073 19.2 5.7 0.0067 16.2 1.8 2.2 2 0 0 2 2 2 1 TATA element modulatory factor 1 DNA binding DASH_Duo1 PF08651.5 gi|57641309|ref|YP_183787.1| - 0.00096 18.6 0.8 0.00096 18.6 0.6 2.0 1 1 1 2 2 2 1 DASH complex subunit Duo1 Uds1 PF15456.1 gi|57641309|ref|YP_183787.1| - 0.0023 17.9 1.1 0.022 14.7 0.2 2.0 2 0 0 2 2 2 1 Up-regulated During Septation Laminin_II PF06009.7 gi|57641309|ref|YP_183787.1| - 0.0039 16.9 1.6 0.0057 16.4 1.1 1.2 1 0 0 1 1 1 1 Laminin Domain II IncA PF04156.9 gi|57641309|ref|YP_183787.1| - 0.0047 16.5 3.1 0.0047 16.5 2.2 1.4 1 1 0 1 1 1 1 IncA protein ADIP PF11559.3 gi|57641309|ref|YP_183787.1| - 0.0074 16.2 1.0 0.0087 15.9 0.7 1.2 1 0 0 1 1 1 1 Afadin- and alpha -actinin-Binding GP41 PF00517.12 gi|57641309|ref|YP_183787.1| - 0.0078 15.7 0.5 0.0078 15.7 0.4 1.6 1 1 0 1 1 1 1 Retroviral envelope protein DUF16 PF01519.11 gi|57641309|ref|YP_183787.1| - 0.0079 16.4 1.9 0.0079 16.4 1.3 1.4 2 0 0 2 2 1 1 Protein of unknown function DUF16 DUF1664 PF07889.7 gi|57641309|ref|YP_183787.1| - 0.0092 15.7 1.7 0.0092 15.7 1.2 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF1664) DUF1043 PF06295.7 gi|57641309|ref|YP_183787.1| - 0.012 15.2 0.5 0.016 14.8 0.4 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1043) Fmp27_WPPW PF10359.4 gi|57641309|ref|YP_183787.1| - 0.019 13.4 0.6 0.021 13.2 0.4 1.1 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain PEARLI-4 PF05278.7 gi|57641309|ref|YP_183787.1| - 0.022 14.1 0.5 0.021 14.1 0.3 1.1 1 0 0 1 1 1 0 Arabidopsis phospholipase-like protein (PEARLI 4) DivIC PF04977.10 gi|57641309|ref|YP_183787.1| - 0.024 14.1 2.6 0.038 13.4 0.5 2.0 2 0 0 2 2 2 0 Septum formation initiator DUF2317 PF10079.4 gi|57641309|ref|YP_183787.1| - 0.027 13.0 0.4 0.024 13.2 0.3 1.0 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2317) Ly49 PF08391.5 gi|57641309|ref|YP_183787.1| - 0.028 14.5 0.7 0.033 14.3 0.5 1.2 1 0 0 1 1 1 0 Ly49-like protein, N-terminal region DUF2730 PF10805.3 gi|57641309|ref|YP_183787.1| - 0.029 14.0 2.6 0.19 11.4 0.5 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF2730) DUF4200 PF13863.1 gi|57641309|ref|YP_183787.1| - 0.041 13.8 1.3 0.041 13.8 0.9 1.5 2 0 0 2 2 1 0 Domain of unknown function (DUF4200) Hemagglutinin PF00509.13 gi|57641309|ref|YP_183787.1| - 0.044 11.9 2.6 0.05 11.7 1.8 1.1 1 0 0 1 1 1 0 Haemagglutinin Nup54 PF13874.1 gi|57641309|ref|YP_183787.1| - 0.045 13.4 1.7 0.073 12.7 1.1 1.4 1 1 0 1 1 1 0 Nucleoporin complex subunit 54 Corona_S2 PF01601.11 gi|57641309|ref|YP_183787.1| - 0.051 11.6 2.2 0.055 11.5 1.5 1.0 1 0 0 1 1 1 0 Coronavirus S2 glycoprotein MscS_porin PF12795.2 gi|57641309|ref|YP_183787.1| - 0.051 12.8 1.3 0.065 12.5 0.9 1.1 1 0 0 1 1 1 0 Mechanosensitive ion channel porin domain FlaC_arch PF05377.6 gi|57641309|ref|YP_183787.1| - 0.058 13.2 6.7 1.1 9.2 0.7 2.7 3 0 0 3 3 3 0 Flagella accessory protein C (FlaC) Prominin PF05478.6 gi|57641309|ref|YP_183787.1| - 0.067 10.7 0.2 0.071 10.6 0.2 1.1 1 0 0 1 1 1 0 Prominin Med9 PF07544.8 gi|57641309|ref|YP_183787.1| - 0.073 12.8 2.9 0.47 10.2 2.0 2.0 1 1 0 1 1 1 0 RNA polymerase II transcription mediator complex subunit 9 DUF2779 PF11074.3 gi|57641309|ref|YP_183787.1| - 0.077 13.0 0.1 0.077 13.0 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function(DUF2779) Sec2p PF06428.6 gi|57641309|ref|YP_183787.1| - 0.077 12.8 2.7 0.12 12.2 1.9 1.4 1 1 0 1 1 1 0 GDP/GTP exchange factor Sec2p DUF4446 PF14584.1 gi|57641309|ref|YP_183787.1| - 0.089 12.6 0.7 0.11 12.3 0.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4446) ATG16 PF08614.6 gi|57641309|ref|YP_183787.1| - 0.11 12.2 6.1 0.26 11.1 4.2 1.5 1 1 0 1 1 1 0 Autophagy protein 16 (ATG16) Phage_GP20 PF06810.6 gi|57641309|ref|YP_183787.1| - 0.12 11.7 5.5 0.16 11.4 3.8 1.3 1 1 0 1 1 1 0 Phage minor structural protein GP20 Tropomyosin_1 PF12718.2 gi|57641309|ref|YP_183787.1| - 0.17 11.6 5.5 0.091 12.6 2.0 1.7 1 1 0 1 1 1 0 Tropomyosin like BLOC1_2 PF10046.4 gi|57641309|ref|YP_183787.1| - 0.19 11.9 4.1 0.3 11.2 1.0 1.8 1 1 2 3 3 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Osmo_CC PF08946.5 gi|57641309|ref|YP_183787.1| - 0.29 11.1 4.7 0.14 12.2 1.3 2.0 2 0 0 2 2 2 0 Osmosensory transporter coiled coil THOC7 PF05615.8 gi|57641309|ref|YP_183787.1| - 0.37 11.0 4.9 0.32 11.2 2.2 1.6 1 1 1 2 2 2 0 Tho complex subunit 7 XhlA PF10779.4 gi|57641309|ref|YP_183787.1| - 0.66 9.9 17.4 1.8 8.5 2.6 3.4 1 1 2 3 3 3 0 Haemolysin XhlA Syntaxin-6_N PF09177.6 gi|57641309|ref|YP_183787.1| - 0.77 10.2 4.4 1.2 9.5 2.1 2.0 2 1 0 2 2 1 0 Syntaxin 6, N-terminal Vac_Fusion PF02346.11 gi|57641309|ref|YP_183787.1| - 1.1 8.6 5.6 1.4 8.4 0.7 2.2 1 1 1 2 2 2 0 Chordopoxvirus fusion protein Fzo_mitofusin PF04799.8 gi|57641309|ref|YP_183787.1| - 1.4 8.2 4.4 1.1 8.5 1.6 1.8 1 1 1 2 2 2 0 fzo-like conserved region Prefoldin_2 PF01920.15 gi|57641309|ref|YP_183787.1| - 1.7 8.4 7.0 7.4 6.3 2.0 2.4 1 1 0 1 1 1 0 Prefoldin subunit Baculo_PEP_C PF04513.7 gi|57641309|ref|YP_183787.1| - 5.2 6.8 7.8 30 4.4 5.5 2.1 1 1 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus NPV_P10 PF05531.7 gi|57641309|ref|YP_183787.1| - 7.5 6.8 6.4 1.8 8.8 1.6 2.1 2 1 0 2 2 1 0 Nucleopolyhedrovirus P10 protein EpuA PF11772.3 gi|57641310|ref|YP_183788.1| - 0.1 12.0 0.5 0.1 12.0 0.4 1.7 2 0 0 2 2 2 0 DNA-directed RNA polymerase subunit beta Metal_resist PF13801.1 gi|57641310|ref|YP_183788.1| - 0.1 12.5 0.0 0.19 11.6 0.0 1.5 1 0 0 1 1 1 0 Heavy-metal resistance CBP4 PF07960.6 gi|57641310|ref|YP_183788.1| - 0.11 12.1 0.0 0.18 11.4 0.0 1.4 1 0 0 1 1 1 0 CBP4 FA_desaturase PF00487.19 gi|57641310|ref|YP_183788.1| - 0.44 9.9 1.9 0.7 9.2 1.3 1.3 1 0 0 1 1 1 0 Fatty acid desaturase GDC-P PF02347.11 gi|57641314|ref|YP_183792.1| - 1.2e-16 60.4 0.0 1.3e-12 47.1 0.0 2.1 2 0 0 2 2 2 2 Glycine cleavage system P-protein Aminotran_5 PF00266.14 gi|57641314|ref|YP_183792.1| - 2.1e-09 36.5 0.0 7.1e-09 34.8 0.0 1.7 1 1 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|57641314|ref|YP_183792.1| - 3.1e-05 23.2 0.0 5e-05 22.5 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_1_2 PF00155.16 gi|57641314|ref|YP_183792.1| - 0.00011 21.2 0.0 0.0002 20.4 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class I and II Pyridoxal_deC PF00282.14 gi|57641314|ref|YP_183792.1| - 0.00079 17.9 0.0 0.11 10.9 0.0 2.1 2 0 0 2 2 2 2 Pyridoxal-dependent decarboxylase conserved domain HTH_13 PF11972.3 gi|57641314|ref|YP_183792.1| - 0.081 12.7 0.0 0.56 10.1 0.0 2.4 2 0 0 2 2 2 0 HTH DNA binding domain GDC-P PF02347.11 gi|57641315|ref|YP_183793.1| - 2.5e-153 510.7 0.0 3e-153 510.5 0.0 1.0 1 0 0 1 1 1 1 Glycine cleavage system P-protein Aminotran_5 PF00266.14 gi|57641315|ref|YP_183793.1| - 0.0092 14.7 0.0 0.018 13.7 0.0 1.6 1 1 0 1 1 1 1 Aminotransferase class-V DUF3189 PF11385.3 gi|57641315|ref|YP_183793.1| - 0.02 14.4 0.0 0.95 9.0 0.0 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF3189) Cys_Met_Meta_PP PF01053.15 gi|57641315|ref|YP_183793.1| - 0.052 11.8 0.0 0.068 11.4 0.0 1.3 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.16 gi|57641315|ref|YP_183793.1| - 0.097 11.7 0.0 0.25 10.4 0.0 1.7 1 0 0 1 1 1 0 Beta-eliminating lyase DUF1771 PF08590.5 gi|57641316|ref|YP_183794.1| - 0.00072 19.5 0.2 0.0014 18.6 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1771) DOMON PF03351.12 gi|57641317|ref|YP_183795.1| - 2.8e-28 98.3 0.0 4.5e-28 97.6 0.0 1.3 1 0 0 1 1 1 1 DOMON domain HAD_2 PF13419.1 gi|57641318|ref|YP_183796.1| - 5.9e-12 46.1 0.6 1.2e-11 45.1 0.3 1.7 1 1 1 2 2 2 1 Haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|57641318|ref|YP_183796.1| - 6.3e-05 23.2 0.2 9.7e-05 22.6 0.1 1.4 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|57641318|ref|YP_183796.1| - 0.002 18.5 0.0 0.48 10.7 0.0 2.1 1 1 0 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.1 gi|57641318|ref|YP_183796.1| - 0.0034 17.2 0.0 0.82 9.5 0.0 2.3 2 0 0 2 2 2 2 Haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|57641318|ref|YP_183796.1| - 0.0067 16.0 0.0 0.69 9.4 0.0 2.6 2 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase Sigma_reg_N PF13800.1 gi|57641319|ref|YP_183797.1| - 0.054 13.5 0.2 0.098 12.7 0.2 1.4 1 0 0 1 1 1 0 Sigma factor regulator N-terminal Metallophos PF00149.23 gi|57641321|ref|YP_183799.1| - 8.3e-08 31.8 0.0 1.4e-07 31.1 0.0 1.3 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.2 gi|57641321|ref|YP_183799.1| - 0.00016 21.5 0.0 0.00021 21.1 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain PrsW-protease PF13367.1 gi|57641322|ref|YP_183800.1| - 6.3e-35 120.1 20.7 7.7e-35 119.8 14.0 1.4 1 1 0 1 1 1 1 Protease prsW family DUF2324 PF10086.4 gi|57641322|ref|YP_183800.1| - 8.5e-25 87.2 11.3 7.5e-18 64.5 1.7 2.2 1 1 1 2 2 2 2 Putative membrane peptidase family (DUF2324) COX7a PF02238.10 gi|57641322|ref|YP_183800.1| - 0.049 13.3 0.2 0.12 12.1 0.1 1.6 1 0 0 1 1 1 0 Cytochrome c oxidase subunit VIIa UBACT PF02134.16 gi|57641322|ref|YP_183800.1| - 0.17 11.5 0.1 0.32 10.5 0.1 1.5 1 0 0 1 1 1 0 Repeat in ubiquitin-activating (UBA) protein Rnk_N PF14760.1 gi|57641323|ref|YP_183801.1| - 0.021 14.8 1.5 0.046 13.8 1.1 1.6 1 0 0 1 1 1 0 Rnk N-terminus EcoR124_C PF12008.3 gi|57641323|ref|YP_183801.1| - 0.029 13.5 0.7 0.034 13.3 0.5 1.1 1 0 0 1 1 1 0 Type I restriction and modification enzyme - subunit R C terminal Sda PF08970.5 gi|57641323|ref|YP_183801.1| - 0.035 13.5 0.4 0.15 11.5 0.1 1.9 2 0 0 2 2 2 0 Sporulation inhibitor A TAFH PF07531.9 gi|57641323|ref|YP_183801.1| - 0.063 12.9 0.1 0.074 12.6 0.1 1.2 1 0 0 1 1 1 0 NHR1 homology to TAF DUF1667 PF07892.6 gi|57641326|ref|YP_183804.1| - 1.1e-29 101.9 1.2 1.7e-29 101.3 0.8 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1667) Molybdop_Fe4S4 PF04879.11 gi|57641326|ref|YP_183804.1| - 0.00041 20.1 3.6 0.0012 18.5 2.5 1.8 1 1 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain HCV_NS5a_1a PF08300.8 gi|57641326|ref|YP_183804.1| - 0.014 15.2 1.4 0.037 13.9 1.0 1.7 1 0 0 1 1 1 0 Hepatitis C virus non-structural 5a zinc finger domain Elf1 PF05129.8 gi|57641326|ref|YP_183804.1| - 0.071 12.8 0.8 0.12 12.0 0.6 1.3 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like Pyr_redox_2 PF07992.9 gi|57641327|ref|YP_183805.1| - 3.6e-23 82.5 2.7 1.3e-22 80.6 1.9 2.8 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|57641327|ref|YP_183805.1| - 1.4e-14 54.2 4.3 8.1e-05 22.9 0.3 3.8 4 0 0 4 4 3 3 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|57641327|ref|YP_183805.1| - 3.7e-12 46.0 0.1 3.7e-07 30.0 0.0 2.6 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.1 gi|57641327|ref|YP_183805.1| - 6.6e-12 45.9 1.4 3.1e-05 24.1 0.4 2.7 2 1 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.2 gi|57641327|ref|YP_183805.1| - 1.1e-10 41.2 7.6 1.7e-10 40.6 0.3 3.1 2 2 1 4 4 4 1 FAD dependent oxidoreductase DAO PF01266.19 gi|57641327|ref|YP_183805.1| - 2.2e-10 39.9 6.3 3.8e-05 22.7 0.3 3.4 4 0 0 4 4 4 3 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|57641327|ref|YP_183805.1| - 5.4e-10 38.6 10.8 1.7e-07 30.4 0.7 3.8 3 1 2 5 5 5 3 FAD binding domain HI0933_like PF03486.9 gi|57641327|ref|YP_183805.1| - 2.1e-09 36.3 4.2 9.6e-08 30.8 0.3 3.2 3 0 0 3 3 3 1 HI0933-like protein Thi4 PF01946.12 gi|57641327|ref|YP_183805.1| - 7.3e-07 28.5 1.2 0.0075 15.3 0.1 2.6 2 0 0 2 2 2 2 Thi4 family GIDA PF01134.17 gi|57641327|ref|YP_183805.1| - 8.3e-07 28.1 1.1 3.3e-06 26.2 0.0 2.3 3 0 0 3 3 3 1 Glucose inhibited division protein A Lycopene_cycl PF05834.7 gi|57641327|ref|YP_183805.1| - 4.2e-06 25.9 4.1 0.00034 19.6 0.5 3.1 3 0 0 3 3 3 1 Lycopene cyclase protein FAD_binding_3 PF01494.14 gi|57641327|ref|YP_183805.1| - 4.5e-06 25.9 2.1 0.0087 15.1 0.0 3.0 3 0 0 3 3 3 2 FAD binding domain NAD_binding_7 PF13241.1 gi|57641327|ref|YP_183805.1| - 2.4e-05 24.5 0.4 0.018 15.3 0.1 2.7 2 0 0 2 2 2 1 Putative NAD(P)-binding AlaDh_PNT_C PF01262.16 gi|57641327|ref|YP_183805.1| - 4.3e-05 23.1 5.2 0.002 17.7 0.0 2.7 3 0 0 3 3 2 2 Alanine dehydrogenase/PNT, C-terminal domain ELFV_dehydrog PF00208.16 gi|57641327|ref|YP_183805.1| - 0.00047 19.8 0.4 0.007 15.9 0.0 2.4 2 0 0 2 2 2 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 2-Hacid_dh_C PF02826.14 gi|57641327|ref|YP_183805.1| - 0.0014 17.7 0.7 0.58 9.2 0.1 2.4 2 0 0 2 2 2 2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GDI PF00996.13 gi|57641327|ref|YP_183805.1| - 0.027 12.8 0.0 0.047 12.0 0.0 1.3 1 0 0 1 1 1 0 GDP dissociation inhibitor 3HCDH_N PF02737.13 gi|57641327|ref|YP_183805.1| - 0.031 13.9 2.6 2.7 7.6 0.2 2.4 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AdoHcyase_NAD PF00670.16 gi|57641327|ref|YP_183805.1| - 0.058 13.2 0.6 0.39 10.5 0.1 2.1 2 0 0 2 2 2 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain F420_oxidored PF03807.12 gi|57641327|ref|YP_183805.1| - 0.083 13.3 1.1 0.8 10.1 0.0 2.8 3 0 0 3 3 3 0 NADP oxidoreductase coenzyme F420-dependent CPSase_L_chain PF00289.17 gi|57641327|ref|YP_183805.1| - 0.098 12.7 0.2 2.8 8.0 0.0 2.9 3 0 0 3 3 3 0 Carbamoyl-phosphate synthase L chain, N-terminal domain UDPG_MGDP_dh_N PF03721.9 gi|57641327|ref|YP_183805.1| - 0.16 11.3 1.4 2.4 7.4 0.1 2.6 3 0 0 3 3 3 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Trp_halogenase PF04820.9 gi|57641327|ref|YP_183805.1| - 0.18 10.3 2.0 0.25 9.9 0.1 1.9 2 0 0 2 2 2 0 Tryptophan halogenase DAO PF01266.19 gi|57641328|ref|YP_183806.1| - 1.4e-73 247.9 0.0 1.6e-73 247.6 0.0 1.1 1 0 0 1 1 1 1 FAD dependent oxidoreductase Fer2_BFD PF04324.10 gi|57641328|ref|YP_183806.1| - 3.4e-12 46.2 0.1 4e-11 42.7 0.2 2.3 2 0 0 2 2 2 1 BFD-like [2Fe-2S] binding domain NAD_binding_8 PF13450.1 gi|57641328|ref|YP_183806.1| - 2.4e-07 30.6 0.0 5.3e-07 29.5 0.0 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.22 gi|57641328|ref|YP_183806.1| - 4.6e-05 23.7 3.0 0.015 15.7 0.1 2.5 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|57641328|ref|YP_183806.1| - 6.2e-05 21.6 1.1 0.12 10.8 0.0 2.1 2 0 0 2 2 2 2 HI0933-like protein Pyr_redox_2 PF07992.9 gi|57641328|ref|YP_183806.1| - 6.4e-05 22.9 1.0 0.0051 16.7 0.7 2.3 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.7 gi|57641328|ref|YP_183806.1| - 0.00022 20.2 0.4 0.011 14.7 0.1 2.3 2 0 0 2 2 2 1 Lycopene cyclase protein NAD_binding_9 PF13454.1 gi|57641328|ref|YP_183806.1| - 0.00033 20.4 1.2 0.008 15.9 0.0 2.3 2 0 0 2 2 2 1 FAD-NAD(P)-binding FAD_binding_3 PF01494.14 gi|57641328|ref|YP_183806.1| - 0.00096 18.2 0.1 0.0074 15.3 0.0 2.0 2 0 0 2 2 2 1 FAD binding domain FAD_binding_2 PF00890.19 gi|57641328|ref|YP_183806.1| - 0.0015 17.4 1.0 0.0067 15.3 0.7 1.8 1 1 0 1 1 1 1 FAD binding domain Trp_halogenase PF04820.9 gi|57641328|ref|YP_183806.1| - 0.0022 16.7 2.6 0.66 8.5 0.3 2.2 2 0 0 2 2 2 2 Tryptophan halogenase Thi4 PF01946.12 gi|57641328|ref|YP_183806.1| - 0.0031 16.6 2.1 0.0065 15.5 0.1 2.2 2 0 0 2 2 2 1 Thi4 family 3HCDH_N PF02737.13 gi|57641328|ref|YP_183806.1| - 0.016 14.8 0.2 0.036 13.7 0.1 1.6 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TrkA_N PF02254.13 gi|57641328|ref|YP_183806.1| - 0.054 13.4 0.1 0.18 11.8 0.0 1.9 2 0 0 2 2 1 0 TrkA-N domain FTP PF07504.8 gi|57641328|ref|YP_183806.1| - 0.075 12.5 0.3 0.59 9.6 0.1 2.2 2 0 0 2 2 2 0 Fungalysin/Thermolysin Propeptide Motif NAD_Gly3P_dh_N PF01210.18 gi|57641328|ref|YP_183806.1| - 0.1 12.3 0.1 0.63 9.7 0.1 2.2 3 0 0 3 3 3 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Amino_oxidase PF01593.19 gi|57641328|ref|YP_183806.1| - 0.1 11.6 0.1 0.16 10.9 0.0 1.2 1 0 0 1 1 1 0 Flavin containing amine oxidoreductase FMO-like PF00743.14 gi|57641328|ref|YP_183806.1| - 0.14 10.2 0.0 0.21 9.7 0.0 1.1 1 0 0 1 1 1 0 Flavin-binding monooxygenase-like FAD_oxidored PF12831.2 gi|57641328|ref|YP_183806.1| - 0.21 10.5 0.7 0.63 9.0 0.5 1.8 1 1 0 1 1 1 0 FAD dependent oxidoreductase AAA_21 PF13304.1 gi|57641330|ref|YP_183808.1| - 1.4e-23 84.2 13.8 1.4e-23 84.2 9.6 2.3 2 1 0 2 2 2 1 AAA domain AAA_15 PF13175.1 gi|57641330|ref|YP_183808.1| - 8.8e-21 74.4 17.7 1.6e-19 70.2 12.3 3.1 1 1 0 1 1 1 1 AAA ATPase domain DUF2813 PF11398.3 gi|57641330|ref|YP_183808.1| - 5.1e-12 45.5 3.3 9.2e-12 44.7 0.0 2.3 2 1 0 2 2 2 1 Protein of unknown function (DUF2813) AAA_23 PF13476.1 gi|57641330|ref|YP_183808.1| - 2.2e-08 34.6 18.5 3.6e-07 30.7 12.7 2.7 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|57641330|ref|YP_183808.1| - 2.9e-07 29.9 0.0 5.7e-07 28.9 0.0 1.6 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|57641330|ref|YP_183808.1| - 7e-06 25.4 0.0 1.7e-05 24.2 0.0 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_tran PF00005.22 gi|57641330|ref|YP_183808.1| - 1.4e-05 25.3 1.0 0.00011 22.5 0.0 2.8 3 1 0 3 3 3 1 ABC transporter AAA_16 PF13191.1 gi|57641330|ref|YP_183808.1| - 0.0033 17.4 0.0 1.1 9.1 0.0 2.9 2 1 1 3 3 3 1 AAA ATPase domain DUF258 PF03193.11 gi|57641330|ref|YP_183808.1| - 0.0072 15.5 0.0 0.015 14.4 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_22 PF13401.1 gi|57641330|ref|YP_183808.1| - 0.018 15.1 0.1 0.94 9.6 0.0 2.8 2 1 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.18 gi|57641330|ref|YP_183808.1| - 0.03 14.2 0.0 0.088 12.7 0.0 1.9 1 0 0 1 1 1 0 50S ribosome-binding GTPase Miro PF08477.8 gi|57641330|ref|YP_183808.1| - 0.048 14.1 0.0 0.16 12.4 0.0 1.9 1 0 0 1 1 1 0 Miro-like protein AAA_10 PF12846.2 gi|57641330|ref|YP_183808.1| - 0.055 12.9 0.1 3.5 6.9 0.0 2.3 2 0 0 2 2 2 0 AAA-like domain FGGY_N PF00370.16 gi|57641331|ref|YP_183809.1| - 2.5e-86 288.9 0.0 3.8e-86 288.3 0.0 1.3 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain FGGY_C PF02782.11 gi|57641331|ref|YP_183809.1| - 3.1e-58 196.6 0.2 1.9e-57 194.0 0.1 2.1 2 0 0 2 2 2 1 FGGY family of carbohydrate kinases, C-terminal domain DUF4445 PF14574.1 gi|57641331|ref|YP_183809.1| - 0.041 12.1 0.0 0.12 10.5 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4445) GDPD PF03009.12 gi|57641332|ref|YP_183810.1| - 3.9e-45 154.3 0.1 6.4e-44 150.3 0.1 2.0 1 1 0 1 1 1 1 Glycerophosphoryl diester phosphodiesterase family PI-PLC-X PF00388.14 gi|57641332|ref|YP_183810.1| - 0.018 14.4 0.0 0.05 12.9 0.0 1.7 1 1 0 1 1 1 0 Phosphatidylinositol-specific phospholipase C, X domain QRPTase_C PF01729.14 gi|57641332|ref|YP_183810.1| - 0.098 12.1 2.4 4.8 6.6 0.1 2.2 1 1 1 2 2 2 0 Quinolinate phosphoribosyl transferase, C-terminal domain GDPD PF03009.12 gi|57641333|ref|YP_183811.1| - 4.2e-17 62.4 0.0 1.3e-12 47.7 0.0 2.1 1 1 0 2 2 2 2 Glycerophosphoryl diester phosphodiesterase family MFS_1 PF07690.11 gi|57641334|ref|YP_183812.1| - 1.5e-49 168.5 40.0 1.2e-32 113.0 9.5 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.1 gi|57641334|ref|YP_183812.1| - 5.9e-26 90.8 27.6 1.4e-25 89.5 19.3 1.5 1 1 0 1 1 1 1 MFS/sugar transport protein LacY_symp PF01306.14 gi|57641334|ref|YP_183812.1| - 6.2e-07 28.3 9.3 6.2e-07 28.3 6.4 3.0 2 1 0 3 3 3 1 LacY proton/sugar symporter MFS_3 PF05977.8 gi|57641334|ref|YP_183812.1| - 3.6 5.5 14.0 0.025 12.7 3.2 1.9 2 1 0 2 2 2 0 Transmembrane secretion effector MFS_1 PF07690.11 gi|57641335|ref|YP_183813.1| - 2.4e-24 85.7 45.5 2.7e-12 46.0 15.8 2.2 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.1 gi|57641335|ref|YP_183813.1| - 2e-14 52.8 22.9 2.8e-14 52.3 15.8 1.2 1 0 0 1 1 1 1 MFS/sugar transport protein Sugar_tr PF00083.19 gi|57641335|ref|YP_183813.1| - 6.9e-05 21.6 26.7 8.4e-05 21.3 7.3 2.5 2 1 0 2 2 2 2 Sugar (and other) transporter Abhydrolase_5 PF12695.2 gi|57641336|ref|YP_183814.1| - 3.5e-20 72.2 0.0 4.9e-20 71.7 0.0 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_6 PF12697.2 gi|57641336|ref|YP_183814.1| - 1.2e-18 67.8 0.0 3.3e-18 66.4 0.0 1.7 1 1 0 1 1 1 1 Alpha/beta hydrolase family Peptidase_S15 PF02129.13 gi|57641336|ref|YP_183814.1| - 7.7e-17 61.5 0.0 8.5e-14 51.6 0.0 2.1 2 0 0 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) Peptidase_S9 PF00326.16 gi|57641336|ref|YP_183814.1| - 4.2e-11 42.4 0.0 6.6e-11 41.8 0.0 1.3 1 1 0 1 1 1 1 Prolyl oligopeptidase family DLH PF01738.13 gi|57641336|ref|YP_183814.1| - 7e-11 41.8 0.0 5.2e-05 22.6 0.0 2.5 2 1 0 2 2 2 2 Dienelactone hydrolase family FSH1 PF03959.8 gi|57641336|ref|YP_183814.1| - 1.4e-05 24.6 0.0 0.00012 21.5 0.0 2.5 1 1 0 1 1 1 1 Serine hydrolase (FSH1) Hydrolase_4 PF12146.3 gi|57641336|ref|YP_183814.1| - 1.7e-05 24.6 0.0 3e-05 23.7 0.0 1.4 1 0 0 1 1 1 1 Putative lysophospholipase Abhydrolase_1 PF00561.15 gi|57641336|ref|YP_183814.1| - 2.9e-05 23.7 0.0 0.13 11.8 0.0 2.2 1 1 1 2 2 2 2 alpha/beta hydrolase fold Acyl_transf_2 PF02273.10 gi|57641336|ref|YP_183814.1| - 0.0056 15.7 0.0 0.012 14.6 0.0 1.5 2 0 0 2 2 2 1 Acyl transferase Abhydrolase_2 PF02230.11 gi|57641336|ref|YP_183814.1| - 0.0068 15.8 0.0 0.16 11.3 0.0 2.6 3 0 0 3 3 3 1 Phospholipase/Carboxylesterase BAAT_C PF08840.6 gi|57641336|ref|YP_183814.1| - 0.0097 15.6 0.0 0.086 12.5 0.0 2.0 1 1 0 1 1 1 1 BAAT / Acyl-CoA thioester hydrolase C terminal LIP PF03583.9 gi|57641336|ref|YP_183814.1| - 0.017 14.3 0.0 0.072 12.2 0.0 1.8 2 0 0 2 2 2 0 Secretory lipase DUF829 PF05705.9 gi|57641336|ref|YP_183814.1| - 0.018 14.7 0.0 0.24 11.0 0.0 2.1 2 0 0 2 2 2 0 Eukaryotic protein of unknown function (DUF829) Lipase PF00151.14 gi|57641336|ref|YP_183814.1| - 0.18 10.9 0.0 0.26 10.4 0.0 1.1 1 0 0 1 1 1 0 Lipase DUF2334 PF10096.4 gi|57641337|ref|YP_183815.1| - 1e-36 126.5 0.2 1.3e-36 126.2 0.1 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2334) Polysacc_deac_1 PF01522.16 gi|57641337|ref|YP_183815.1| - 4.7e-06 26.2 0.0 7e-06 25.6 0.0 1.3 1 0 0 1 1 1 1 Polysaccharide deacetylase Thymidylate_kin PF02223.12 gi|57641338|ref|YP_183816.1| - 7.8e-61 204.7 0.0 9e-61 204.4 0.0 1.0 1 0 0 1 1 1 1 Thymidylate kinase AAA_33 PF13671.1 gi|57641338|ref|YP_183816.1| - 5e-05 23.2 0.0 7.5e-05 22.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|57641338|ref|YP_183816.1| - 0.00019 22.2 0.7 0.0013 19.5 0.5 2.1 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|57641338|ref|YP_183816.1| - 0.00025 21.0 0.0 0.00056 19.9 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|57641338|ref|YP_183816.1| - 0.001 19.3 0.4 0.0032 17.7 0.2 2.1 1 1 0 1 1 1 1 AAA domain PPK2 PF03976.9 gi|57641338|ref|YP_183816.1| - 0.0044 16.3 0.1 0.013 14.8 0.0 1.8 2 0 0 2 2 2 1 Polyphosphate kinase 2 (PPK2) AAA_22 PF13401.1 gi|57641338|ref|YP_183816.1| - 0.0074 16.4 0.0 0.015 15.4 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.1 gi|57641338|ref|YP_183816.1| - 0.0078 15.8 0.0 0.013 15.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain SRP54 PF00448.17 gi|57641338|ref|YP_183816.1| - 0.0095 15.3 0.0 0.017 14.5 0.0 1.4 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain KTI12 PF08433.5 gi|57641338|ref|YP_183816.1| - 0.0099 15.1 0.0 0.052 12.7 0.0 2.0 2 0 0 2 2 2 1 Chromatin associated protein KTI12 SKI PF01202.17 gi|57641338|ref|YP_183816.1| - 0.013 15.3 0.1 3.1 7.6 0.1 2.2 2 0 0 2 2 2 0 Shikimate kinase MobB PF03205.9 gi|57641338|ref|YP_183816.1| - 0.037 13.7 0.0 0.1 12.3 0.0 1.7 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B K-box PF01486.12 gi|57641338|ref|YP_183816.1| - 0.084 12.6 0.2 0.14 11.9 0.1 1.3 1 0 0 1 1 1 0 K-box region AAA_5 PF07728.9 gi|57641338|ref|YP_183816.1| - 0.089 12.5 0.1 0.26 11.0 0.0 1.8 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) CbiA PF01656.18 gi|57641338|ref|YP_183816.1| - 0.099 12.0 0.0 0.11 11.8 0.0 1.5 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain LOH1CR12 PF10158.4 gi|57641338|ref|YP_183816.1| - 0.17 11.7 0.8 0.25 11.1 0.6 1.2 1 0 0 1 1 1 0 Tumour suppressor protein PGM_PMM_I PF02878.11 gi|57641339|ref|YP_183817.1| - 4.3e-06 26.2 0.0 8.3e-06 25.3 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PEPCK PF00821.13 gi|57641340|ref|YP_183818.1| - 5e-199 662.2 0.0 5.7e-199 662.0 0.0 1.0 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxykinase DUF3417 PF11897.3 gi|57641341|ref|YP_183819.1| - 3.1e-36 123.9 2.5 3.1e-36 123.9 1.7 2.7 3 0 0 3 3 3 1 Protein of unknown function (DUF3417) Phosphorylase PF00343.15 gi|57641341|ref|YP_183819.1| - 2.4e-31 108.3 0.0 1.8e-18 65.8 0.0 4.1 2 1 2 4 4 4 4 Carbohydrate phosphorylase Glyco_hydro_71 PF03659.9 gi|57641341|ref|YP_183819.1| - 0.022 13.2 0.5 0.044 12.2 0.3 1.4 1 0 0 1 1 1 0 Glycosyl hydrolase family 71 PGK PF00162.14 gi|57641341|ref|YP_183819.1| - 0.43 9.0 0.0 0.66 8.4 0.0 1.2 1 0 0 1 1 1 0 Phosphoglycerate kinase tRNA-synt_1c PF00749.16 gi|57641343|ref|YP_183821.1| - 1.5e-82 276.7 0.0 2.1e-82 276.3 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1c_C PF03950.13 gi|57641343|ref|YP_183821.1| - 5.7e-30 104.2 0.0 1.3e-29 103.0 0.0 1.6 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), anti-codon binding domain Sec39 PF08314.6 gi|57641343|ref|YP_183821.1| - 0.21 9.4 0.0 0.28 9.0 0.0 1.1 1 0 0 1 1 1 0 Secretory pathway protein Sec39 SAYSvFN PF10260.4 gi|57641344|ref|YP_183822.1| - 0.51 10.1 2.5 0.44 10.3 0.4 1.7 2 0 0 2 2 2 0 Uncharacterized conserved domain (SAYSvFN) DUF2964 PF11177.3 gi|57641344|ref|YP_183822.1| - 0.79 9.6 5.0 2.9 7.8 0.1 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2964) DUF1673 PF07895.6 gi|57641344|ref|YP_183822.1| - 1.8 8.0 4.0 2.7 7.4 2.8 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF1673) FA_desaturase PF00487.19 gi|57641344|ref|YP_183822.1| - 7.4 5.9 6.4 8.3 5.7 4.4 1.1 1 0 0 1 1 1 0 Fatty acid desaturase Toprim_4 PF13662.1 gi|57641345|ref|YP_183823.1| - 2e-10 40.5 0.8 2.8e-09 36.8 0.2 2.6 2 1 0 2 2 2 1 Toprim domain Toprim PF01751.17 gi|57641345|ref|YP_183823.1| - 0.00093 19.1 0.4 0.00093 19.1 0.3 2.9 3 1 1 4 4 4 1 Toprim domain Toprim PF01751.17 gi|57641346|ref|YP_183824.1| - 8.7e-06 25.6 0.1 1.6e-05 24.7 0.0 1.5 1 1 0 1 1 1 1 Toprim domain Toprim_4 PF13662.1 gi|57641346|ref|YP_183824.1| - 3e-05 23.9 0.0 5.2e-05 23.1 0.0 1.3 1 0 0 1 1 1 1 Toprim domain Toprim_3 PF13362.1 gi|57641346|ref|YP_183824.1| - 0.0022 18.1 0.0 0.0029 17.8 0.0 1.2 1 0 0 1 1 1 1 Toprim domain Toprim_2 PF13155.1 gi|57641346|ref|YP_183824.1| - 0.15 12.4 0.0 0.17 12.2 0.0 1.3 1 0 0 1 1 1 0 Toprim-like Radical_SAM PF04055.16 gi|57641347|ref|YP_183825.1| - 4.3e-24 85.5 0.0 8.8e-24 84.5 0.0 1.6 1 0 0 1 1 1 1 Radical SAM superfamily B12-binding PF02310.14 gi|57641347|ref|YP_183825.1| - 8.6e-13 48.2 0.0 1.5e-12 47.4 0.0 1.4 1 0 0 1 1 1 1 B12 binding domain CBFD_NFYB_HMF PF00808.18 gi|57641348|ref|YP_183826.1| - 4.6e-21 74.6 0.5 5.1e-21 74.5 0.4 1.0 1 0 0 1 1 1 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Histone PF00125.19 gi|57641348|ref|YP_183826.1| - 7.5e-13 48.4 0.2 8.5e-13 48.2 0.2 1.0 1 0 0 1 1 1 1 Core histone H2A/H2B/H3/H4 CENP-S PF15630.1 gi|57641348|ref|YP_183826.1| - 6.4e-07 29.4 0.0 6.8e-07 29.3 0.0 1.1 1 0 0 1 1 1 1 Kinetochore component CENP-S TAF PF02969.12 gi|57641348|ref|YP_183826.1| - 5.2e-06 26.3 0.3 5.4e-06 26.2 0.2 1.1 1 0 0 1 1 1 1 TATA box binding protein associated factor (TAF) Bromo_TP PF07524.8 gi|57641348|ref|YP_183826.1| - 1.9e-05 24.2 0.0 2.1e-05 24.1 0.0 1.0 1 0 0 1 1 1 1 Bromodomain associated TFIID_20kDa PF03847.8 gi|57641348|ref|YP_183826.1| - 7.2e-05 22.9 0.1 7.8e-05 22.8 0.0 1.1 1 0 0 1 1 1 1 Transcription initiation factor TFIID subunit A TFIID-18kDa PF02269.11 gi|57641348|ref|YP_183826.1| - 0.00017 21.3 0.0 0.00018 21.2 0.0 1.1 1 0 0 1 1 1 1 Transcription initiation factor IID, 18kD subunit CENP-T PF15511.1 gi|57641348|ref|YP_183826.1| - 0.00028 20.2 0.2 0.00031 20.1 0.1 1.0 1 0 0 1 1 1 1 Centromere kinetochore component CENP-T TFIID-31kDa PF02291.10 gi|57641348|ref|YP_183826.1| - 0.00061 19.5 0.1 0.00064 19.4 0.0 1.1 1 0 0 1 1 1 1 Transcription initiation factor IID, 31kD subunit PCP_red PF08369.5 gi|57641348|ref|YP_183826.1| - 0.025 14.4 1.2 0.19 11.6 0.1 2.3 2 1 0 2 2 2 0 Proto-chlorophyllide reductase 57 kD subunit PE PF00934.15 gi|57641348|ref|YP_183826.1| - 0.058 13.4 0.0 0.063 13.3 0.0 1.1 1 0 0 1 1 1 0 PE family CENP-X PF09415.5 gi|57641348|ref|YP_183826.1| - 0.086 12.6 1.2 0.099 12.4 0.8 1.1 1 0 0 1 1 1 0 CENP-S associating Centromere protein X DUF1931 PF09123.6 gi|57641348|ref|YP_183826.1| - 0.099 12.5 0.5 0.11 12.4 0.3 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1931) dUTPase PF00692.14 gi|57641349|ref|YP_183827.1| - 2.2e-14 53.0 0.0 1.1e-13 50.8 0.0 1.8 1 1 1 2 2 2 1 dUTPase DCD PF06559.6 gi|57641349|ref|YP_183827.1| - 0.014 13.7 0.0 2.6 6.3 0.0 2.2 1 1 1 2 2 2 0 2'-deoxycytidine 5'-triphosphate deaminase (DCD) Ribosomal_60s PF00428.14 gi|57641350|ref|YP_183828.1| - 1.1e-19 70.5 21.7 1.3e-19 70.3 15.0 1.1 1 0 0 1 1 1 1 60s Acidic ribosomal protein PHY PF00360.15 gi|57641350|ref|YP_183828.1| - 0.04 13.0 0.1 0.045 12.8 0.1 1.1 1 0 0 1 1 1 0 Phytochrome region PepSY_2 PF13670.1 gi|57641350|ref|YP_183828.1| - 0.041 13.7 6.5 3.1 7.7 0.0 2.3 2 0 0 2 2 2 0 Peptidase propeptide and YPEB domain DUF177 PF02620.12 gi|57641350|ref|YP_183828.1| - 0.073 13.1 0.9 0.081 12.9 0.6 1.1 1 0 0 1 1 1 0 Uncharacterized ACR, COG1399 Sigma70_ner PF04546.8 gi|57641350|ref|YP_183828.1| - 0.13 11.8 2.2 0.16 11.6 1.5 1.2 1 0 0 1 1 1 0 Sigma-70, non-essential region DUF2226 PF09987.4 gi|57641350|ref|YP_183828.1| - 0.98 8.4 4.1 1.1 8.3 2.8 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2226) Ribosomal_L10 PF00466.15 gi|57641351|ref|YP_183829.1| - 1.4e-20 73.0 0.0 2.7e-20 72.1 0.0 1.4 1 0 0 1 1 1 1 Ribosomal protein L10 Ribosomal_60s PF00428.14 gi|57641351|ref|YP_183829.1| - 3.4e-07 30.5 13.4 3.4e-07 30.5 9.3 3.8 4 1 0 4 4 4 1 60s Acidic ribosomal protein 7TMR-HDED PF07697.6 gi|57641351|ref|YP_183829.1| - 0.016 14.9 3.7 0.033 13.9 0.1 2.4 2 0 0 2 2 2 0 7TM-HD extracellular PBP_sp32 PF07222.7 gi|57641351|ref|YP_183829.1| - 0.24 10.5 3.5 0.37 9.9 2.4 1.2 1 0 0 1 1 1 0 Proacrosin binding protein sp32 Ribosomal_L1 PF00687.16 gi|57641352|ref|YP_183830.1| - 2.9e-55 187.0 0.7 3.4e-55 186.7 0.5 1.0 1 0 0 1 1 1 1 Ribosomal protein L1p/L10e family PTS_IIB PF02302.12 gi|57641352|ref|YP_183830.1| - 0.13 12.7 0.9 0.59 10.6 0.0 2.4 2 1 2 4 4 4 0 PTS system, Lactose/Cellobiose specific IIB subunit Ribosomal_L11_N PF03946.9 gi|57641353|ref|YP_183831.1| - 1.4e-25 88.4 1.8 1.4e-25 88.4 1.3 1.7 2 0 0 2 2 2 1 Ribosomal protein L11, N-terminal domain Ribosomal_L11 PF00298.14 gi|57641353|ref|YP_183831.1| - 6e-24 83.9 2.7 1.1e-23 83.1 1.9 1.5 1 0 0 1 1 1 1 Ribosomal protein L11, RNA binding domain KH_2 PF07650.12 gi|57641353|ref|YP_183831.1| - 0.019 14.5 0.6 0.04 13.4 0.1 1.8 2 0 0 2 2 2 0 KH domain F420_ligase PF01996.11 gi|57641353|ref|YP_183831.1| - 0.11 11.5 0.4 0.2 10.7 0.1 1.4 1 1 0 1 1 1 0 F420-0:Gamma-glutamyl ligase Spt5-NGN PF03439.8 gi|57641354|ref|YP_183832.1| - 3.7e-24 84.2 0.0 6.8e-24 83.4 0.0 1.4 1 0 0 1 1 1 1 Early transcription elongation factor of RNA pol II, NGN section KOW PF00467.24 gi|57641354|ref|YP_183832.1| - 1e-09 37.6 1.1 3.1e-09 36.2 0.6 1.9 2 0 0 2 2 2 1 KOW motif NusG PF02357.14 gi|57641354|ref|YP_183832.1| - 0.026 14.7 0.0 0.14 12.4 0.0 2.2 1 1 0 1 1 1 0 Transcription termination factor nusG DUF411 PF04214.8 gi|57641354|ref|YP_183832.1| - 0.12 11.9 0.0 0.21 11.0 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF DUF996 PF06195.8 gi|57641355|ref|YP_183833.1| - 0.0035 17.3 1.3 0.0038 17.2 0.9 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF996) SecE PF00584.15 gi|57641355|ref|YP_183833.1| - 0.038 13.5 0.3 0.046 13.2 0.2 1.1 1 0 0 1 1 1 0 SecE/Sec61-gamma subunits of protein translocation complex Tubulin PF00091.20 gi|57641356|ref|YP_183834.1| - 4.6e-43 147.5 1.2 1.9e-42 145.5 0.9 1.9 1 1 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain FtsZ_C PF12327.3 gi|57641356|ref|YP_183834.1| - 7.5e-32 109.2 1.1 2.4e-31 107.6 0.8 1.9 1 0 0 1 1 1 1 FtsZ family, C-terminal domain ThiF PF00899.16 gi|57641356|ref|YP_183834.1| - 0.01 15.6 0.6 0.038 13.8 0.2 2.1 2 0 0 2 2 2 0 ThiF family DUF3236 PF11576.3 gi|57641356|ref|YP_183834.1| - 0.03 13.7 0.2 0.13 11.6 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3236) Tubulin_2 PF13809.1 gi|57641356|ref|YP_183834.1| - 0.03 13.2 1.6 0.044 12.7 0.0 1.9 2 0 0 2 2 2 0 Tubulin like GGDN PF05165.7 gi|57641356|ref|YP_183834.1| - 0.2 10.7 1.8 2.1 7.3 0.1 2.3 2 0 0 2 2 2 0 GGDN family tRNA_deacylase PF04414.7 gi|57641357|ref|YP_183835.1| - 2.6e-72 242.4 0.0 3e-72 242.2 0.0 1.1 1 0 0 1 1 1 1 D-aminoacyl-tRNA deacylase DUF4406 PF14359.1 gi|57641357|ref|YP_183835.1| - 0.041 13.9 0.0 2.3 8.3 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4406) Class_IIIsignal PF04021.7 gi|57641358|ref|YP_183836.1| - 3.4e-09 36.0 0.3 4.4e-09 35.7 0.2 1.2 1 0 0 1 1 1 1 Class III signal peptide DUF2254 PF10011.4 gi|57641358|ref|YP_183836.1| - 0.016 13.6 0.5 0.017 13.6 0.4 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2254) DUF948 PF06103.6 gi|57641358|ref|YP_183836.1| - 0.023 14.5 1.9 0.03 14.1 1.4 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF948) Brr6_like_C_C PF10104.4 gi|57641358|ref|YP_183836.1| - 0.038 13.5 0.9 0.039 13.4 0.6 1.0 1 0 0 1 1 1 0 Di-sulfide bridge nucleocytoplasmic transport domain MSC PF09402.5 gi|57641358|ref|YP_183836.1| - 0.054 12.2 0.4 0.06 12.0 0.3 1.0 1 0 0 1 1 1 0 Man1-Src1p-C-terminal domain DUF4282 PF14110.1 gi|57641358|ref|YP_183836.1| - 0.14 12.3 0.9 0.17 12.1 0.6 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4282) Arabinose_Isome PF02610.10 gi|57641359|ref|YP_183837.1| - 0.0012 17.9 0.0 0.0017 17.3 0.0 1.2 1 0 0 1 1 1 1 L-arabinose isomerase Fucose_iso_C PF02952.12 gi|57641359|ref|YP_183837.1| - 0.0054 16.2 0.0 0.0097 15.4 0.0 1.4 1 0 0 1 1 1 1 L-fucose isomerase, C-terminal domain PDGLE PF13190.1 gi|57641359|ref|YP_183837.1| - 0.13 11.9 0.0 0.25 11.0 0.0 1.4 1 0 0 1 1 1 0 PDGLE domain UPF0278 PF08745.6 gi|57641360|ref|YP_183838.1| - 2e-75 252.5 0.6 2.3e-75 252.4 0.4 1.0 1 0 0 1 1 1 1 UPF0278 family DUF4411 PF14367.1 gi|57641360|ref|YP_183838.1| - 0.0035 17.0 0.0 0.57 9.8 0.0 2.3 1 1 0 2 2 2 2 Domain of unknown function (DUF4411) PIN PF01850.16 gi|57641360|ref|YP_183838.1| - 0.048 13.9 3.0 1.1 9.6 1.8 2.4 1 1 0 1 1 1 0 PIN domain Rib_5-P_isom_A PF06026.9 gi|57641361|ref|YP_183839.1| - 1.8e-67 225.9 0.2 2.3e-67 225.6 0.2 1.1 1 0 0 1 1 1 1 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DeoRC PF00455.17 gi|57641361|ref|YP_183839.1| - 4.4e-08 32.9 0.1 9.4e-06 25.3 0.0 2.2 2 0 0 2 2 2 2 DeoR C terminal sensor domain FixH PF05751.6 gi|57641362|ref|YP_183840.1| - 5.1 6.8 6.1 0.54 10.0 1.1 1.6 2 0 0 2 2 2 0 FixH Beta-Casp PF10996.3 gi|57641363|ref|YP_183841.1| - 1.3e-35 122.0 0.0 2.3e-35 121.2 0.0 1.4 1 0 0 1 1 1 1 Beta-Casp domain Lactamase_B PF00753.22 gi|57641363|ref|YP_183841.1| - 3.7e-20 72.4 1.4 6.3e-20 71.6 0.9 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily RMMBL PF07521.7 gi|57641363|ref|YP_183841.1| - 8.3e-17 60.7 0.2 4.4e-16 58.4 0.2 2.3 3 0 0 3 3 3 1 RNA-metabolising metallo-beta-lactamase Lactamase_B_2 PF12706.2 gi|57641363|ref|YP_183841.1| - 1.7e-07 30.9 0.2 3.1e-07 30.1 0.1 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain KH_2 PF07650.12 gi|57641363|ref|YP_183841.1| - 1.5e-06 27.6 2.8 0.0018 17.7 0.1 3.0 1 1 1 2 2 2 2 KH domain KH_1 PF00013.24 gi|57641363|ref|YP_183841.1| - 0.00054 19.5 0.1 0.0055 16.3 0.1 2.6 2 0 0 2 2 2 1 KH domain KH_4 PF13083.1 gi|57641363|ref|YP_183841.1| - 0.0015 18.1 0.1 0.0053 16.3 0.0 2.0 2 0 0 2 2 2 1 KH domain KH_3 PF13014.1 gi|57641363|ref|YP_183841.1| - 0.07 12.8 0.8 0.27 10.9 0.1 2.3 2 0 0 2 2 2 0 KH domain RPEL PF02755.10 gi|57641363|ref|YP_183841.1| - 0.14 11.5 1.1 0.25 10.7 0.1 2.0 2 0 0 2 2 2 0 RPEL repeat Proteasome PF00227.21 gi|57641364|ref|YP_183842.1| - 4.6e-53 179.3 0.2 5.3e-53 179.1 0.1 1.0 1 0 0 1 1 1 1 Proteasome subunit BOFC_N PF08977.5 gi|57641365|ref|YP_183843.1| - 0.031 14.0 0.1 0.089 12.6 0.1 1.8 1 0 0 1 1 1 0 Bypass of Forespore C, N terminal HTH_39 PF14090.1 gi|57641365|ref|YP_183843.1| - 0.079 12.4 0.0 0.23 10.9 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain ELFV_dehydrog PF00208.16 gi|57641366|ref|YP_183844.1| - 1.8e-75 253.6 0.3 2.4e-75 253.2 0.2 1.2 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.13 gi|57641366|ref|YP_183844.1| - 5e-52 174.9 0.0 9e-52 174.1 0.0 1.4 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.14 gi|57641366|ref|YP_183844.1| - 8.7e-05 21.7 0.0 0.0002 20.5 0.0 1.6 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DUF2680 PF10925.3 gi|57641366|ref|YP_183844.1| - 0.043 13.6 0.0 0.11 12.3 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2680) SNF PF00209.13 gi|57641367|ref|YP_183845.1| - 2.1e-40 138.6 37.5 4.9e-21 74.7 13.0 2.2 1 1 1 2 2 2 2 Sodium:neurotransmitter symporter family 2TM PF13239.1 gi|57641368|ref|YP_183846.1| - 0.13 12.3 0.5 0.13 12.3 0.3 1.0 1 0 0 1 1 1 0 2TM domain Prominin PF05478.6 gi|57641369|ref|YP_183847.1| - 0.16 9.4 1.7 0.22 8.9 1.2 1.1 1 0 0 1 1 1 0 Prominin CARD PF00619.16 gi|57641369|ref|YP_183847.1| - 0.17 11.7 2.9 0.26 11.1 2.0 1.3 1 0 0 1 1 1 0 Caspase recruitment domain HTH_WhiA PF02650.9 gi|57641369|ref|YP_183847.1| - 0.18 12.1 4.5 0.46 10.9 0.8 2.7 1 1 2 3 3 3 0 WhiA C-terminal HTH domain Uds1 PF15456.1 gi|57641369|ref|YP_183847.1| - 0.22 11.5 5.2 0.38 10.7 3.5 1.5 1 1 0 1 1 1 0 Up-regulated During Septation DUF2628 PF10947.3 gi|57641369|ref|YP_183847.1| - 0.69 9.7 6.0 0.18 11.6 1.4 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2628) Hydantoinase_A PF01968.13 gi|57641369|ref|YP_183847.1| - 1.5 7.8 4.9 1.5 7.8 3.4 1.2 1 1 0 1 1 1 0 Hydantoinase/oxoprolinase P-II PF00543.17 gi|57641370|ref|YP_183848.1| - 5.7e-29 100.6 0.1 8.9e-29 99.9 0.0 1.3 1 1 0 1 1 1 1 Nitrogen regulatory protein P-II Glyco_hydro_57 PF03065.10 gi|57641371|ref|YP_183849.1| - 4.2e-76 256.2 7.9 3e-75 253.3 5.5 2.1 1 1 0 1 1 1 1 Glycosyl hydrolase family 57 DUF1957 PF09210.6 gi|57641371|ref|YP_183849.1| - 1.5e-32 111.7 1.2 1.6e-29 101.9 0.0 3.4 3 0 0 3 3 3 1 Domain of unknown function (DUF1957) HHH_5 PF14520.1 gi|57641371|ref|YP_183849.1| - 1.1e-12 47.9 0.3 3.5e-12 46.2 0.2 1.9 1 0 0 1 1 1 1 Helix-hairpin-helix domain DUF4332 PF14229.1 gi|57641371|ref|YP_183849.1| - 0.00014 21.8 0.1 0.00055 19.8 0.0 2.0 2 1 1 3 3 3 1 Domain of unknown function (DUF4332) HHH_3 PF12836.2 gi|57641371|ref|YP_183849.1| - 0.00023 21.0 0.2 0.0068 16.3 0.0 2.7 2 0 0 2 2 2 1 Helix-hairpin-helix motif DNA_pol_lambd_f PF10391.4 gi|57641371|ref|YP_183849.1| - 0.00049 19.6 0.0 0.0012 18.3 0.0 1.7 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda HHH PF00633.18 gi|57641371|ref|YP_183849.1| - 0.0013 18.3 0.1 0.025 14.2 0.0 2.5 2 0 0 2 2 2 1 Helix-hairpin-helix motif Cdd1 PF11731.3 gi|57641371|ref|YP_183849.1| - 0.0018 18.1 0.0 0.0048 16.7 0.0 1.6 1 0 0 1 1 1 1 Pathogenicity locus Nitro_FeMo-Co PF02579.12 gi|57641371|ref|YP_183849.1| - 0.015 15.3 0.1 0.038 14.0 0.0 1.7 1 0 0 1 1 1 0 Dinitrogenase iron-molybdenum cofactor Cpn60_TCP1 PF00118.19 gi|57641371|ref|YP_183849.1| - 0.018 13.6 0.3 0.035 12.7 0.2 1.4 1 0 0 1 1 1 0 TCP-1/cpn60 chaperonin family RNA_pol_A_CTD PF03118.10 gi|57641371|ref|YP_183849.1| - 0.033 13.6 0.2 0.43 10.0 0.1 2.4 1 1 1 2 2 2 0 Bacterial RNA polymerase, alpha chain C terminal domain Sec63 PF02889.11 gi|57641371|ref|YP_183849.1| - 0.05 12.8 0.1 0.078 12.1 0.1 1.4 1 0 0 1 1 1 0 Sec63 Brl domain TfoX_C PF04994.8 gi|57641371|ref|YP_183849.1| - 0.056 13.3 0.0 0.13 12.2 0.0 1.6 1 0 0 1 1 1 0 TfoX C-terminal domain Polysacc_deac_1 PF01522.16 gi|57641371|ref|YP_183849.1| - 0.069 12.7 0.0 0.38 10.3 0.0 2.3 2 0 0 2 2 2 0 Polysaccharide deacetylase VMA21 PF09446.5 gi|57641372|ref|YP_183850.1| - 0.098 12.5 0.3 0.2 11.6 0.2 1.5 1 0 0 1 1 1 0 VMA21-like domain PIRT PF15099.1 gi|57641372|ref|YP_183850.1| - 0.39 9.9 3.9 0.55 9.4 0.1 2.2 1 1 1 2 2 2 0 Phosphoinositide-interacting protein family FbpA PF05833.6 gi|57641373|ref|YP_183851.1| - 1.3e-101 340.4 15.7 1.6e-101 340.1 10.9 1.0 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) DUF814 PF05670.8 gi|57641373|ref|YP_183851.1| - 4.8e-29 100.0 0.0 1.1e-28 98.9 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF814) DUF3441 PF11923.3 gi|57641373|ref|YP_183851.1| - 6.6e-05 22.4 0.8 0.00017 21.1 0.0 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF3441) PSD4 PF07631.6 gi|57641373|ref|YP_183851.1| - 0.015 15.6 0.1 0.037 14.3 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1592) Ribosomal_S13 PF00416.17 gi|57641373|ref|YP_183851.1| - 0.1 13.0 2.2 0.51 10.8 0.0 3.0 3 0 0 3 3 3 0 Ribosomal protein S13/S18 Myb_DNA-bind_3 PF12776.2 gi|57641373|ref|YP_183851.1| - 1 10.0 5.9 29 5.3 1.0 3.4 4 0 0 4 4 4 0 Myb/SANT-like DNA-binding domain NikR_C PF08753.6 gi|57641374|ref|YP_183852.1| - 2.8e-32 110.4 3.6 4.3e-32 109.8 2.5 1.3 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_1 PF01402.16 gi|57641374|ref|YP_183852.1| - 2.5e-07 30.3 0.7 5.4e-07 29.2 0.0 2.0 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family CAP59_mtransfer PF11735.3 gi|57641374|ref|YP_183852.1| - 0.021 14.0 0.2 0.026 13.7 0.1 1.0 1 0 0 1 1 1 0 Cryptococcal mannosyltransferase 1 HhH-GPD PF00730.20 gi|57641374|ref|YP_183852.1| - 0.032 14.5 0.2 5.3 7.3 0.0 2.1 1 1 1 2 2 2 0 HhH-GPD superfamily base excision DNA repair protein RHH_3 PF12651.2 gi|57641374|ref|YP_183852.1| - 0.047 13.4 0.0 0.12 12.1 0.0 1.6 1 0 0 1 1 1 0 Ribbon-helix-helix domain Herpes_UL33 PF03581.8 gi|57641374|ref|YP_183852.1| - 0.19 11.6 0.8 0.44 10.4 0.5 1.7 1 1 0 1 1 1 0 Herpesvirus UL33-like protein PALP PF00291.20 gi|57641377|ref|YP_183855.1| - 2.9e-42 144.9 0.1 3.6e-42 144.6 0.1 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Semialdhyde_dh PF01118.19 gi|57641378|ref|YP_183856.1| - 5.1e-30 104.2 0.0 8.6e-30 103.5 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.13 gi|57641378|ref|YP_183856.1| - 4.4e-28 98.3 0.0 9.8e-28 97.2 0.0 1.6 2 0 0 2 2 2 1 Semialdehyde dehydrogenase, dimerisation domain DapB_N PF01113.15 gi|57641378|ref|YP_183856.1| - 0.00074 19.4 0.0 0.0012 18.7 0.0 1.3 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Gp_dh_C PF02800.15 gi|57641378|ref|YP_183856.1| - 0.013 14.9 0.0 0.026 14.0 0.0 1.4 1 0 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain GFO_IDH_MocA PF01408.17 gi|57641378|ref|YP_183856.1| - 0.023 15.2 0.0 0.041 14.4 0.0 1.4 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold Epimerase PF01370.16 gi|57641378|ref|YP_183856.1| - 0.072 12.5 0.0 0.11 11.9 0.0 1.2 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.1 gi|57641378|ref|YP_183856.1| - 0.12 12.3 0.0 0.2 11.6 0.0 1.4 1 0 0 1 1 1 0 NADH(P)-binding GHMP_kinases_C PF08544.8 gi|57641379|ref|YP_183857.1| - 1.4e-12 47.6 0.1 3.3e-12 46.4 0.0 1.6 1 0 0 1 1 1 1 GHMP kinases C terminal GHMP_kinases_N PF00288.21 gi|57641379|ref|YP_183857.1| - 1.9e-12 47.0 1.3 1.9e-12 47.0 0.9 2.6 2 0 0 2 2 2 1 GHMP kinases N terminal domain DUF4244 PF14029.1 gi|57641379|ref|YP_183857.1| - 4.8 6.3 7.5 0.63 9.1 0.2 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF4244) AA_kinase PF00696.23 gi|57641380|ref|YP_183858.1| - 1.1e-41 142.9 0.0 1.5e-41 142.5 0.0 1.1 1 0 0 1 1 1 1 Amino acid kinase family NAD_binding_8 PF13450.1 gi|57641380|ref|YP_183858.1| - 0.054 13.5 0.0 0.11 12.4 0.0 1.5 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain Meth_synt_2 PF01717.13 gi|57641381|ref|YP_183859.1| - 3.6e-99 331.8 0.0 4.1e-99 331.6 0.0 1.0 1 0 0 1 1 1 1 Cobalamin-independent synthase, Catalytic domain Meth_synt_1 PF08267.7 gi|57641381|ref|YP_183859.1| - 8.1e-17 61.4 0.2 2.4e-15 56.6 0.2 2.0 2 0 0 2 2 2 1 Cobalamin-independent synthase, N-terminal domain Band_7 PF01145.20 gi|57641381|ref|YP_183859.1| - 0.0026 17.7 0.0 0.015 15.1 0.0 2.2 2 1 0 2 2 2 1 SPFH domain / Band 7 family Meth_synt_1 PF08267.7 gi|57641382|ref|YP_183860.1| - 2.5e-35 122.2 0.1 2.7e-33 115.5 0.1 2.1 1 1 0 1 1 1 1 Cobalamin-independent synthase, N-terminal domain Meth_synt_2 PF01717.13 gi|57641382|ref|YP_183860.1| - 6.5e-17 61.4 0.0 1.9e-15 56.6 0.0 2.0 1 1 0 1 1 1 1 Cobalamin-independent synthase, Catalytic domain MTHFR_C PF12225.3 gi|57641383|ref|YP_183861.1| - 3e-11 42.6 0.1 5.5e-11 41.8 0.1 1.3 1 0 0 1 1 1 1 Methylene-tetrahydrofolate reductase C terminal MTHFR PF02219.12 gi|57641383|ref|YP_183861.1| - 5.8e-07 28.8 0.0 7.5e-07 28.5 0.0 1.1 1 0 0 1 1 1 1 Methylenetetrahydrofolate reductase DUF2562 PF10814.3 gi|57641383|ref|YP_183861.1| - 0.092 12.6 0.1 0.17 11.8 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2562) Cys_Met_Meta_PP PF01053.15 gi|57641384|ref|YP_183862.1| - 1.6e-106 355.8 0.0 1.8e-106 355.7 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.14 gi|57641384|ref|YP_183862.1| - 1.6e-08 33.7 0.0 2.2e-08 33.2 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.12 gi|57641384|ref|YP_183862.1| - 1.8e-08 33.8 0.0 2.3e-06 26.8 0.0 2.1 2 0 0 2 2 2 2 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.16 gi|57641384|ref|YP_183862.1| - 0.022 13.8 0.0 0.055 12.6 0.0 1.6 1 1 0 1 1 1 0 Beta-eliminating lyase RNase_P_p30 PF01876.11 gi|57641385|ref|YP_183863.1| - 6e-33 113.2 0.0 7.1e-33 112.9 0.0 1.1 1 0 0 1 1 1 1 RNase P subunit p30 RNA_binding PF01877.12 gi|57641386|ref|YP_183864.1| - 2.1e-36 124.5 2.7 2.1e-36 124.5 1.9 1.3 2 0 0 2 2 2 1 RNA binding DUF3441 PF11923.3 gi|57641386|ref|YP_183864.1| - 0.014 15.0 0.1 1.7 8.2 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF3441) ABC_tran PF00005.22 gi|57641387|ref|YP_183865.1| - 1.3e-30 106.4 0.0 2.1e-30 105.7 0.0 1.4 1 0 0 1 1 1 1 ABC transporter ABC_membrane PF00664.18 gi|57641387|ref|YP_183865.1| - 2.1e-13 50.3 2.9 3.2e-13 49.7 2.0 1.2 1 0 0 1 1 1 1 ABC transporter transmembrane region AAA_21 PF13304.1 gi|57641387|ref|YP_183865.1| - 4.1e-08 33.5 0.1 0.00061 19.8 0.0 2.5 1 1 1 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|57641387|ref|YP_183865.1| - 0.00045 20.2 0.0 0.0019 18.2 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_10 PF12846.2 gi|57641387|ref|YP_183865.1| - 0.00049 19.6 0.0 0.001 18.5 0.0 1.5 1 0 0 1 1 1 1 AAA-like domain AAA_19 PF13245.1 gi|57641387|ref|YP_183865.1| - 0.00058 19.5 0.0 0.0018 17.9 0.0 1.9 1 0 0 1 1 1 1 Part of AAA domain AAA_17 PF13207.1 gi|57641387|ref|YP_183865.1| - 0.00094 20.0 0.0 0.002 18.9 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|57641387|ref|YP_183865.1| - 0.004 16.5 0.0 0.0073 15.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain DUF87 PF01935.12 gi|57641387|ref|YP_183865.1| - 0.0063 16.3 0.0 0.015 15.0 0.0 1.6 1 1 0 1 1 1 1 Domain of unknown function DUF87 AAA_22 PF13401.1 gi|57641387|ref|YP_183865.1| - 0.0064 16.6 0.5 0.047 13.8 0.3 2.3 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|57641387|ref|YP_183865.1| - 0.007 15.8 0.0 0.016 14.7 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain PduV-EutP PF10662.4 gi|57641387|ref|YP_183865.1| - 0.0092 15.4 0.1 4.5 6.7 0.0 2.4 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation AAA_18 PF13238.1 gi|57641387|ref|YP_183865.1| - 0.01 16.1 0.0 0.02 15.1 0.0 1.6 1 0 0 1 1 1 0 AAA domain ArgK PF03308.11 gi|57641387|ref|YP_183865.1| - 0.013 14.3 0.5 0.024 13.4 0.1 1.6 2 0 0 2 2 2 0 ArgK protein AAA_30 PF13604.1 gi|57641387|ref|YP_183865.1| - 0.013 15.1 0.0 0.041 13.4 0.0 1.7 1 1 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|57641387|ref|YP_183865.1| - 0.013 14.6 0.1 0.024 13.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 NB-ARC PF00931.17 gi|57641387|ref|YP_183865.1| - 0.023 13.5 0.1 0.16 10.7 0.0 2.3 2 0 0 2 2 2 0 NB-ARC domain CAAD PF14159.1 gi|57641387|ref|YP_183865.1| - 0.027 14.1 0.9 0.069 12.8 0.7 1.7 1 0 0 1 1 1 0 CAAD domains of cyanobacterial aminoacyl-tRNA synthetase MMR_HSR1 PF01926.18 gi|57641387|ref|YP_183865.1| - 0.044 13.7 0.0 0.1 12.5 0.0 1.7 1 0 0 1 1 1 0 50S ribosome-binding GTPase cobW PF02492.14 gi|57641387|ref|YP_183865.1| - 0.052 13.0 0.0 0.12 11.8 0.0 1.6 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_23 PF13476.1 gi|57641387|ref|YP_183865.1| - 0.071 13.4 0.1 0.14 12.4 0.1 1.4 1 0 0 1 1 1 0 AAA domain RecA PF00154.16 gi|57641387|ref|YP_183865.1| - 0.073 12.1 0.0 0.12 11.4 0.0 1.3 1 0 0 1 1 1 0 recA bacterial DNA recombination protein NACHT PF05729.7 gi|57641387|ref|YP_183865.1| - 0.073 12.7 0.0 0.14 11.8 0.0 1.4 1 0 0 1 1 1 0 NACHT domain MobB PF03205.9 gi|57641387|ref|YP_183865.1| - 0.078 12.6 0.0 0.18 11.4 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B Sigma54_activat PF00158.21 gi|57641387|ref|YP_183865.1| - 0.093 12.2 0.0 0.17 11.3 0.0 1.3 1 0 0 1 1 1 0 Sigma-54 interaction domain REJ PF02010.10 gi|57641388|ref|YP_183866.1| - 0.072 11.4 0.0 0.093 11.0 0.0 1.2 1 0 0 1 1 1 0 REJ domain Ribosomal_L15e PF00827.12 gi|57641389|ref|YP_183867.1| - 5.4e-91 303.3 7.5 6.4e-91 303.0 5.2 1.0 1 0 0 1 1 1 1 Ribosomal L15 Peptidase_M24 PF00557.19 gi|57641390|ref|YP_183868.1| - 1.6e-67 227.1 0.1 2.4e-67 226.5 0.1 1.3 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.13 gi|57641390|ref|YP_183868.1| - 2.3e-17 63.7 0.0 3.6e-17 63.0 0.0 1.4 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain TrkA_C PF02080.16 gi|57641391|ref|YP_183869.1| - 9e-17 60.4 0.2 1.9e-16 59.4 0.2 1.5 1 0 0 1 1 1 1 TrkA-C domain PhoU PF01895.14 gi|57641391|ref|YP_183869.1| - 3e-08 33.9 5.7 5.8e-08 33.0 3.9 1.5 1 0 0 1 1 1 1 PhoU domain YopD PF05844.7 gi|57641391|ref|YP_183869.1| - 0.11 11.5 0.3 0.16 10.9 0.2 1.2 1 0 0 1 1 1 0 YopD protein TrkA_C PF02080.16 gi|57641392|ref|YP_183870.1| - 5.4e-15 54.7 0.1 9.2e-15 53.9 0.0 1.4 1 0 0 1 1 1 1 TrkA-C domain PhoU PF01895.14 gi|57641392|ref|YP_183870.1| - 7.7e-11 42.2 4.5 1.3e-10 41.5 3.1 1.4 1 0 0 1 1 1 1 PhoU domain PhoU_div PF01865.11 gi|57641392|ref|YP_183870.1| - 5.6e-05 22.4 2.2 8.8e-05 21.7 1.5 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF47 MgtE PF01769.11 gi|57641393|ref|YP_183871.1| - 3.9e-45 153.4 35.6 7.1e-25 87.8 7.6 3.1 4 0 0 4 4 4 2 Divalent cation transporter DUF4398 PF14346.1 gi|57641394|ref|YP_183872.1| - 4.6e-05 23.4 30.4 0.21 11.6 2.8 4.2 1 1 2 4 4 4 4 Domain of unknown function (DUF4398) YfdX PF10938.3 gi|57641394|ref|YP_183872.1| - 0.0018 17.9 22.3 0.015 14.9 3.0 3.8 2 2 1 4 4 4 3 YfdX protein Sec5 PF15469.1 gi|57641394|ref|YP_183872.1| - 0.0029 17.3 0.4 0.0029 17.3 0.3 3.2 2 1 1 3 3 3 1 Exocyst complex component Sec5 COX5A PF02284.11 gi|57641394|ref|YP_183872.1| - 0.053 13.4 6.6 2.2 8.2 0.0 3.5 2 1 0 3 3 3 0 Cytochrome c oxidase subunit Va SgrR_N PF12793.2 gi|57641394|ref|YP_183872.1| - 0.082 12.9 0.1 0.082 12.9 0.1 3.2 3 2 1 4 4 4 0 Sugar transport-related sRNA regulator N-term RGCC PF15151.1 gi|57641394|ref|YP_183872.1| - 0.2 12.0 2.2 0.96 9.8 0.1 2.8 3 0 0 3 3 3 0 Response gene to complement 32 protein family P16-Arc PF04699.9 gi|57641394|ref|YP_183872.1| - 0.26 11.2 5.2 0.38 10.7 0.5 2.8 1 1 0 2 2 2 0 ARP2/3 complex 16 kDa subunit (p16-Arc) GTPase_Cys_C PF12631.2 gi|57641394|ref|YP_183872.1| - 0.61 10.5 8.1 26 5.2 0.1 4.5 4 1 1 5 5 5 0 Catalytic cysteine-containing C-terminus of GTPase, MnmE Mt_ATP-synt_D PF05873.7 gi|57641394|ref|YP_183872.1| - 0.71 9.5 11.6 0.053 13.1 0.9 2.9 2 1 0 2 2 2 0 ATP synthase D chain, mitochondrial (ATP5H) TPR_2 PF07719.12 gi|57641394|ref|YP_183872.1| - 1.8 8.6 16.8 10 6.3 0.2 5.8 6 1 0 6 6 6 0 Tetratricopeptide repeat Eco57I PF07669.6 gi|57641395|ref|YP_183873.1| - 2.3e-16 60.0 0.0 8.2e-16 58.2 0.0 1.9 1 0 0 1 1 1 1 Eco57I restriction-modification methylase N6_Mtase PF02384.11 gi|57641395|ref|YP_183873.1| - 2.6e-14 53.0 0.2 8.5e-06 25.0 0.0 3.0 3 1 0 3 3 3 2 N-6 DNA Methylase TaqI_C PF12950.2 gi|57641395|ref|YP_183873.1| - 4.4e-10 39.3 0.0 6.7e-09 35.5 0.0 3.1 2 1 0 2 2 2 1 TaqI-like C-terminal specificity domain Methyltransf_26 PF13659.1 gi|57641395|ref|YP_183873.1| - 4.4e-10 39.5 0.0 3e-09 36.9 0.0 2.2 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|57641395|ref|YP_183873.1| - 4.4e-05 22.9 0.0 0.0047 16.3 0.0 2.7 3 0 0 3 3 3 1 Methyltransferase small domain UPF0020 PF01170.13 gi|57641395|ref|YP_183873.1| - 0.16 11.5 0.0 11 5.6 0.0 2.4 2 0 0 2 2 2 0 Putative RNA methylase family UPF0020 tRNA-synt_1 PF00133.17 gi|57641396|ref|YP_183874.1| - 1.5e-66 224.7 1.7 3.5e-66 223.4 1.2 1.6 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.8 gi|57641396|ref|YP_183874.1| - 1.9e-32 112.1 0.3 5.8e-32 110.5 0.2 1.9 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.6 gi|57641396|ref|YP_183874.1| - 7e-25 87.5 0.7 9.1e-12 44.3 0.1 2.5 2 0 0 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1_2 PF13603.1 gi|57641396|ref|YP_183874.1| - 1.8e-10 40.4 0.7 5.4e-10 38.8 0.0 2.1 2 0 0 2 2 2 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1e PF01406.14 gi|57641396|ref|YP_183874.1| - 3.7e-10 39.4 0.1 4.4e-05 22.7 0.0 2.7 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.13 gi|57641396|ref|YP_183874.1| - 0.00018 20.3 0.0 0.0075 14.9 0.0 2.4 2 0 0 2 2 2 1 tRNA synthetases class I (K) tRNA-synt_1d PF00750.14 gi|57641396|ref|YP_183874.1| - 0.0002 20.3 0.0 0.0049 15.7 0.0 2.5 2 0 0 2 2 2 1 tRNA synthetases class I (R) tRNA-synt_1b PF00579.20 gi|57641396|ref|YP_183874.1| - 0.22 10.5 1.5 0.68 9.0 0.0 2.5 3 0 0 3 3 3 0 tRNA synthetases class I (W and Y) Rhomboid PF01694.17 gi|57641397|ref|YP_183875.1| - 0.006 16.6 8.0 0.0082 16.1 5.5 1.1 1 0 0 1 1 1 1 Rhomboid family DUF4395 PF14340.1 gi|57641397|ref|YP_183875.1| - 0.025 14.6 0.4 0.17 11.9 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4395) ABC2_membrane_5 PF13346.1 gi|57641397|ref|YP_183875.1| - 0.34 10.1 9.2 0.44 9.8 6.4 1.2 1 0 0 1 1 1 0 ABC-2 family transporter protein DUF3645 PF12359.3 gi|57641398|ref|YP_183876.1| - 0.12 11.5 0.5 13 4.9 0.0 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3645) Methyltransf_23 PF13489.1 gi|57641399|ref|YP_183877.1| - 9.8e-09 35.1 0.0 1.5e-08 34.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|57641399|ref|YP_183877.1| - 8.5e-07 28.3 0.0 1.6e-06 27.4 0.0 1.5 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_11 PF08241.7 gi|57641399|ref|YP_183877.1| - 6.1e-06 26.6 0.0 1.2e-05 25.7 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|57641399|ref|YP_183877.1| - 0.00011 21.8 0.0 0.00022 20.8 0.0 1.4 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MetW PF07021.7 gi|57641399|ref|YP_183877.1| - 0.0014 17.9 0.0 0.0032 16.8 0.0 1.5 1 1 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_25 PF13649.1 gi|57641399|ref|YP_183877.1| - 0.0027 18.0 0.0 0.0055 17.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|57641399|ref|YP_183877.1| - 0.012 14.6 0.0 0.017 14.1 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Methyltransf_31 PF13847.1 gi|57641399|ref|YP_183877.1| - 0.054 13.0 0.1 0.29 10.7 0.0 2.0 1 1 0 1 1 1 0 Methyltransferase domain Arch_ATPase PF01637.13 gi|57641400|ref|YP_183878.1| - 1.4e-35 123.0 3.0 4.6e-35 121.4 2.1 1.9 1 1 0 1 1 1 1 Archaeal ATPase DUF234 PF03008.9 gi|57641400|ref|YP_183878.1| - 5.8e-31 106.5 0.1 5.8e-31 106.5 0.1 2.5 3 0 0 3 3 3 1 Archaea bacterial proteins of unknown function AAA_14 PF13173.1 gi|57641400|ref|YP_183878.1| - 3.7e-09 36.5 1.3 6.6e-09 35.7 0.1 2.0 2 0 0 2 2 2 1 AAA domain HTH_45 PF14947.1 gi|57641400|ref|YP_183878.1| - 5.5e-05 22.8 0.2 0.00015 21.5 0.2 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_5 PF01022.15 gi|57641400|ref|YP_183878.1| - 0.00012 21.6 0.0 0.00025 20.6 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family AAA_16 PF13191.1 gi|57641400|ref|YP_183878.1| - 0.00017 21.6 0.0 0.00059 19.8 0.0 1.9 1 1 1 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|57641400|ref|YP_183878.1| - 0.019 15.1 0.0 0.047 13.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain Hemocyanin_N PF03722.9 gi|57641400|ref|YP_183878.1| - 0.023 14.8 0.3 0.05 13.7 0.2 1.5 1 0 0 1 1 1 0 Hemocyanin, all-alpha domain HTH_20 PF12840.2 gi|57641400|ref|YP_183878.1| - 0.034 13.9 0.0 0.18 11.6 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_IclR PF09339.5 gi|57641400|ref|YP_183878.1| - 0.069 12.7 0.0 0.19 11.3 0.0 1.7 1 0 0 1 1 1 0 IclR helix-turn-helix domain Miro PF08477.8 gi|57641400|ref|YP_183878.1| - 0.079 13.4 0.0 0.3 11.5 0.0 2.0 3 0 0 3 3 2 0 Miro-like protein AAA PF00004.24 gi|57641400|ref|YP_183878.1| - 0.11 12.6 0.0 0.26 11.4 0.0 1.7 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) TrmB PF01978.14 gi|57641400|ref|YP_183878.1| - 0.15 11.7 0.9 0.56 9.9 0.1 2.2 3 0 0 3 3 3 0 Sugar-specific transcriptional regulator TrmB Peptidase_M20 PF01546.23 gi|57641401|ref|YP_183879.1| - 2.2e-39 134.9 0.1 2.8e-39 134.5 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M42 PF05343.9 gi|57641401|ref|YP_183879.1| - 1.1e-06 27.6 0.0 2.4e-05 23.2 0.0 2.6 3 0 0 3 3 3 1 M42 glutamyl aminopeptidase Peptidase_M28 PF04389.12 gi|57641401|ref|YP_183879.1| - 0.00021 21.0 0.0 0.0023 17.7 0.0 2.1 2 0 0 2 2 2 1 Peptidase family M28 DUF3267 PF11667.3 gi|57641402|ref|YP_183880.1| - 1.8e-22 79.6 2.7 1.8e-22 79.6 1.9 2.0 3 0 0 3 3 3 1 Protein of unknown function (DUF3267) Ferric_reduct PF01794.14 gi|57641402|ref|YP_183880.1| - 0.0004 20.4 0.3 0.0033 17.5 0.2 2.1 1 1 0 1 1 1 1 Ferric reductase like transmembrane component Peptidase_M50B PF13398.1 gi|57641402|ref|YP_183880.1| - 0.01 15.1 0.4 0.01 15.1 0.3 2.8 1 1 2 3 3 3 0 Peptidase M50B-like Peptidase_M50 PF02163.17 gi|57641402|ref|YP_183880.1| - 0.016 14.1 0.7 0.016 14.1 0.5 2.2 1 1 1 2 2 2 0 Peptidase family M50 DUF788 PF05620.6 gi|57641402|ref|YP_183880.1| - 0.14 11.9 3.3 0.25 11.2 0.2 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF788) polyprenyl_synt PF00348.12 gi|57641403|ref|YP_183881.1| - 1.8e-70 236.8 0.0 4.2e-70 235.5 0.0 1.5 1 1 1 2 2 2 1 Polyprenyl synthetase Lactamase_B PF00753.22 gi|57641404|ref|YP_183882.1| - 4.7e-23 81.8 0.2 9.5e-23 80.8 0.1 1.6 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily RMMBL PF07521.7 gi|57641404|ref|YP_183882.1| - 7.3e-12 44.9 0.4 2e-11 43.4 0.1 2.0 2 0 0 2 2 2 1 RNA-metabolising metallo-beta-lactamase Lactamase_B_2 PF12706.2 gi|57641404|ref|YP_183882.1| - 7.1e-10 38.7 0.0 1.7e-09 37.5 0.0 1.6 2 0 0 2 2 2 1 Beta-lactamase superfamily domain PDEase_II PF02112.10 gi|57641404|ref|YP_183882.1| - 0.076 11.9 0.0 0.24 10.3 0.0 1.7 2 0 0 2 2 2 0 cAMP phosphodiesterases class-II FMN_dh PF01070.13 gi|57641405|ref|YP_183883.1| - 1.2e-31 109.9 0.0 2.2e-18 66.2 0.0 2.1 1 1 1 2 2 2 2 FMN-dependent dehydrogenase IMPDH PF00478.20 gi|57641405|ref|YP_183883.1| - 1.4e-06 27.4 3.7 0.0038 16.1 0.7 3.6 4 0 0 4 4 4 2 IMP dehydrogenase / GMP reductase domain NMO PF03060.10 gi|57641405|ref|YP_183883.1| - 9.2e-05 21.7 3.0 0.00039 19.6 1.7 2.2 2 1 1 3 3 3 1 Nitronate monooxygenase Glu_synthase PF01645.12 gi|57641405|ref|YP_183883.1| - 0.014 14.2 0.4 0.058 12.3 0.2 1.9 2 0 0 2 2 2 0 Conserved region in glutamate synthase DUF561 PF04481.7 gi|57641405|ref|YP_183883.1| - 0.024 13.6 0.0 0.037 12.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF561) Asp_Glu_race PF01177.17 gi|57641406|ref|YP_183884.1| - 1.2e-33 116.8 0.0 1.5e-33 116.5 0.0 1.0 1 0 0 1 1 1 1 Asp/Glu/Hydantoin racemase PTA_PTB PF01515.14 gi|57641406|ref|YP_183884.1| - 0.081 11.9 0.1 0.097 11.7 0.1 1.2 1 0 0 1 1 1 0 Phosphate acetyl/butaryl transferase TctC PF03401.9 gi|57641406|ref|YP_183884.1| - 0.084 11.7 0.1 0.11 11.4 0.0 1.1 1 0 0 1 1 1 0 Tripartite tricarboxylate transporter family receptor MoCF_biosynth PF00994.19 gi|57641407|ref|YP_183885.1| - 2.9e-38 130.5 0.0 4.2e-38 129.9 0.0 1.2 1 0 0 1 1 1 1 Probable molybdopterin binding domain NIL PF09383.5 gi|57641407|ref|YP_183885.1| - 0.027 14.0 0.0 0.77 9.3 0.0 2.4 2 0 0 2 2 2 0 NIL domain B12-binding PF02310.14 gi|57641407|ref|YP_183885.1| - 0.051 13.4 0.0 0.094 12.5 0.0 1.4 1 0 0 1 1 1 0 B12 binding domain KMP11 PF03037.11 gi|57641407|ref|YP_183885.1| - 0.079 13.5 0.0 0.17 12.4 0.0 1.6 1 0 0 1 1 1 0 Kinetoplastid membrane protein 11 AA_kinase PF00696.23 gi|57641408|ref|YP_183886.1| - 4.4e-37 127.9 0.0 5.1e-37 127.7 0.0 1.0 1 0 0 1 1 1 1 Amino acid kinase family DapH_N PF08503.5 gi|57641408|ref|YP_183886.1| - 0.02 14.9 0.0 0.06 13.4 0.0 1.8 1 1 0 1 1 1 0 Tetrahydrodipicolinate succinyltransferase N-terminal GHMP_kinases_N PF00288.21 gi|57641409|ref|YP_183887.1| - 5.6e-17 61.5 3.1 1.4e-16 60.2 2.1 1.7 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|57641409|ref|YP_183887.1| - 2.4e-13 50.1 2.4 3.6e-13 49.5 0.3 2.3 2 1 0 2 2 2 1 GHMP kinases C terminal GalKase_gal_bdg PF10509.4 gi|57641409|ref|YP_183887.1| - 0.005 16.0 0.6 0.013 14.7 0.0 2.1 2 0 0 2 2 2 1 Galactokinase galactose-binding signature DUF86 PF01934.12 gi|57641410|ref|YP_183888.1| - 1.3e-25 89.3 0.1 1.6e-25 89.0 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF86 Corona_NS2A PF05213.7 gi|57641410|ref|YP_183888.1| - 0.087 12.1 0.1 0.12 11.6 0.0 1.3 1 0 0 1 1 1 0 Coronavirus NS2A protein NTP_transf_2 PF01909.18 gi|57641411|ref|YP_183889.1| - 3e-11 43.4 0.7 4.6e-11 42.9 0.5 1.5 1 1 0 1 1 1 1 Nucleotidyltransferase domain Nuc-transf PF10127.4 gi|57641411|ref|YP_183889.1| - 0.033 13.5 0.0 0.042 13.2 0.0 1.2 1 0 0 1 1 1 0 Predicted nucleotidyltransferase Memo PF01875.12 gi|57641412|ref|YP_183890.1| - 1.4e-89 299.6 0.0 1.6e-89 299.4 0.0 1.0 1 0 0 1 1 1 1 Memo-like protein LigB PF02900.13 gi|57641412|ref|YP_183890.1| - 0.00024 20.1 0.0 0.00031 19.8 0.0 1.1 1 0 0 1 1 1 1 Catalytic LigB subunit of aromatic ring-opening dioxygenase PALP PF00291.20 gi|57641413|ref|YP_183891.1| - 4.2e-54 183.8 0.0 5.4e-54 183.5 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme PNP_UDP_1 PF01048.15 gi|57641414|ref|YP_183892.1| - 1.5e-45 154.9 0.3 1.9e-45 154.6 0.2 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily TPR_14 PF13428.1 gi|57641415|ref|YP_183893.1| - 0.0022 18.4 4.3 22 6.0 0.0 5.3 4 2 2 6 6 6 0 Tetratricopeptide repeat PPR_3 PF13812.1 gi|57641415|ref|YP_183893.1| - 0.0038 17.3 0.1 39 4.8 0.0 4.5 4 0 0 4 4 4 0 Pentatricopeptide repeat domain PPR PF01535.15 gi|57641415|ref|YP_183893.1| - 0.048 13.6 5.4 20 5.4 0.0 5.0 6 0 0 6 6 5 0 PPR repeat TPR_16 PF13432.1 gi|57641415|ref|YP_183893.1| - 0.055 14.1 11.7 7.2 7.4 0.0 4.7 4 1 0 5 5 5 0 Tetratricopeptide repeat TPR_7 PF13176.1 gi|57641415|ref|YP_183893.1| - 0.057 13.2 0.7 20 5.2 0.0 4.1 4 0 0 4 4 4 0 Tetratricopeptide repeat PPR_2 PF13041.1 gi|57641415|ref|YP_183893.1| - 0.086 12.8 0.4 17 5.4 0.0 3.6 4 0 0 4 4 4 0 PPR repeat family THUMP PF02926.12 gi|57641415|ref|YP_183893.1| - 0.087 12.7 0.6 0.24 11.2 0.0 2.0 2 0 0 2 2 2 0 THUMP domain HBS1_N PF08938.5 gi|57641415|ref|YP_183893.1| - 0.099 12.7 0.0 0.77 9.9 0.0 2.5 2 0 0 2 2 2 0 HBS1 N-terminus Apc3 PF12895.2 gi|57641415|ref|YP_183893.1| - 0.14 12.3 0.7 29 4.8 0.1 3.1 3 1 0 3 3 3 0 Anaphase-promoting complex, cyclosome, subunit 3 TPR_11 PF13414.1 gi|57641415|ref|YP_183893.1| - 0.32 10.6 7.1 8.8 6.0 0.2 4.3 4 1 0 4 4 4 0 TPR repeat TPR_19 PF14559.1 gi|57641415|ref|YP_183893.1| - 0.47 10.8 4.1 8.6 6.7 0.2 3.9 4 1 1 5 5 4 0 Tetratricopeptide repeat TPR_2 PF07719.12 gi|57641415|ref|YP_183893.1| - 3 7.9 14.0 11 6.2 0.1 5.5 6 0 0 6 6 6 0 Tetratricopeptide repeat Pyr_redox_2 PF07992.9 gi|57641416|ref|YP_183894.1| - 9e-35 120.3 0.0 1.8e-34 119.4 0.0 1.8 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|57641416|ref|YP_183894.1| - 4.2e-18 65.5 4.2 3.5e-16 59.3 1.3 2.6 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|57641416|ref|YP_183894.1| - 2.9e-17 62.6 0.9 5.1e-17 61.8 0.1 1.9 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain K_oxygenase PF13434.1 gi|57641416|ref|YP_183894.1| - 9.4e-08 31.3 0.0 7.7e-07 28.3 0.0 2.1 2 0 0 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) Pyr_redox_3 PF13738.1 gi|57641416|ref|YP_183894.1| - 9.6e-08 32.3 0.1 1.3e-06 28.6 0.0 2.5 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|57641416|ref|YP_183894.1| - 2.4e-07 29.9 3.1 0.021 13.6 0.0 3.9 4 1 1 5 5 5 3 Glucose inhibited division protein A FAD_binding_2 PF00890.19 gi|57641416|ref|YP_183894.1| - 6.9e-07 28.4 3.3 0.0014 17.5 0.1 3.2 2 1 1 3 3 3 2 FAD binding domain FAD_oxidored PF12831.2 gi|57641416|ref|YP_183894.1| - 7.5e-06 25.2 0.4 0.002 17.2 0.1 2.6 3 0 0 3 3 3 2 FAD dependent oxidoreductase DAO PF01266.19 gi|57641416|ref|YP_183894.1| - 2.7e-05 23.2 8.2 0.3 9.9 0.1 4.2 4 1 0 5 5 5 2 FAD dependent oxidoreductase Trp_halogenase PF04820.9 gi|57641416|ref|YP_183894.1| - 0.00015 20.5 0.9 0.29 9.7 0.0 2.4 3 0 0 3 3 3 2 Tryptophan halogenase NAD_binding_9 PF13454.1 gi|57641416|ref|YP_183894.1| - 0.00044 20.0 0.2 1 9.1 0.0 2.9 2 1 1 3 3 3 2 FAD-NAD(P)-binding HI0933_like PF03486.9 gi|57641416|ref|YP_183894.1| - 0.00082 17.9 0.9 0.027 12.9 0.0 3.1 4 0 0 4 4 4 1 HI0933-like protein Lycopene_cycl PF05834.7 gi|57641416|ref|YP_183894.1| - 0.0023 16.9 0.5 1.2 7.9 0.0 2.8 2 1 0 3 3 3 2 Lycopene cyclase protein NAD_binding_8 PF13450.1 gi|57641416|ref|YP_183894.1| - 0.0089 16.0 3.1 0.74 9.8 0.0 3.0 3 0 0 3 3 3 1 NAD(P)-binding Rossmann-like domain GATase_3 PF07685.9 gi|57641416|ref|YP_183894.1| - 0.0096 15.5 0.0 0.98 8.9 0.0 2.8 3 0 0 3 3 3 1 CobB/CobQ-like glutamine amidotransferase domain NAD_binding_7 PF13241.1 gi|57641416|ref|YP_183894.1| - 0.12 12.6 0.3 0.43 10.8 0.1 1.9 2 0 0 2 2 2 0 Putative NAD(P)-binding PNP_UDP_1 PF01048.15 gi|57641417|ref|YP_183895.1| - 3.4e-55 186.5 0.0 3.8e-55 186.3 0.0 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily Bse634I PF07832.6 gi|57641418|ref|YP_183896.1| - 0.024 13.7 0.1 0.04 13.0 0.1 1.3 1 0 0 1 1 1 0 Cfr10I/Bse634I restriction endonuclease T2SF PF00482.18 gi|57641418|ref|YP_183896.1| - 0.027 14.3 0.1 0.52 10.2 0.0 2.9 3 1 0 3 3 3 0 Type II secretion system (T2SS), protein F DUF3692 PF12469.3 gi|57641418|ref|YP_183896.1| - 0.043 14.0 0.7 1.6 8.9 0.0 2.8 3 0 0 3 3 3 0 CRISPR-associated protein DUF4363 PF14276.1 gi|57641418|ref|YP_183896.1| - 0.061 13.0 0.6 0.33 10.6 0.1 2.5 2 1 1 3 3 3 0 Domain of unknown function (DUF4363) SRP54 PF00448.17 gi|57641421|ref|YP_183899.1| - 4.3e-77 258.0 0.0 7.8e-77 257.1 0.0 1.4 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP_SPB PF02978.14 gi|57641421|ref|YP_183899.1| - 1.6e-36 124.7 5.2 1.9e-36 124.4 1.0 2.7 3 0 0 3 3 2 1 Signal peptide binding domain SRP54_N PF02881.14 gi|57641421|ref|YP_183899.1| - 1.2e-17 63.7 2.6 1.2e-17 63.7 1.8 2.4 2 0 0 2 2 1 1 SRP54-type protein, helical bundle domain CbiA PF01656.18 gi|57641421|ref|YP_183899.1| - 9.3e-08 31.7 4.2 9.8e-08 31.6 0.3 2.7 2 2 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_22 PF13401.1 gi|57641421|ref|YP_183899.1| - 3.1e-07 30.5 0.3 5.4e-06 26.5 0.0 2.6 2 0 0 2 2 2 1 AAA domain MobB PF03205.9 gi|57641421|ref|YP_183899.1| - 1.8e-06 27.6 0.5 6.5e-06 25.8 0.4 1.9 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_16 PF13191.1 gi|57641421|ref|YP_183899.1| - 2.6e-06 27.5 0.7 0.00017 21.6 0.0 2.5 1 1 1 2 2 2 1 AAA ATPase domain cobW PF02492.14 gi|57641421|ref|YP_183899.1| - 1.6e-05 24.4 1.2 0.098 12.0 0.0 2.8 3 0 0 3 3 3 2 CobW/HypB/UreG, nucleotide-binding domain AAA_17 PF13207.1 gi|57641421|ref|YP_183899.1| - 5.7e-05 23.9 0.4 0.00045 21.0 0.1 2.6 2 1 0 2 2 1 1 AAA domain AAA_33 PF13671.1 gi|57641421|ref|YP_183899.1| - 8.1e-05 22.5 0.0 0.00021 21.2 0.0 1.8 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.7 gi|57641421|ref|YP_183899.1| - 8.6e-05 21.7 0.3 0.00052 19.1 0.0 2.3 2 1 0 2 2 2 1 Zeta toxin LpxK PF02606.9 gi|57641421|ref|YP_183899.1| - 0.00021 20.3 0.4 0.0021 17.0 0.1 2.5 2 0 0 2 2 2 1 Tetraacyldisaccharide-1-P 4'-kinase ArgK PF03308.11 gi|57641421|ref|YP_183899.1| - 0.00034 19.4 0.8 0.0021 16.9 0.0 2.3 2 0 0 2 2 2 1 ArgK protein NTPase_1 PF03266.10 gi|57641421|ref|YP_183899.1| - 0.0011 18.7 2.2 0.0087 15.7 0.1 2.6 2 0 0 2 2 2 1 NTPase Glyco_transf_4 PF13439.1 gi|57641421|ref|YP_183899.1| - 0.0013 18.5 0.1 0.092 12.4 0.0 2.4 2 0 0 2 2 2 1 Glycosyltransferase Family 4 APS_kinase PF01583.15 gi|57641421|ref|YP_183899.1| - 0.0021 17.7 0.1 0.014 15.0 0.0 2.2 2 0 0 2 2 2 1 Adenylylsulphate kinase ATP_bind_1 PF03029.12 gi|57641421|ref|YP_183899.1| - 0.0029 17.1 0.2 0.0085 15.6 0.0 1.9 2 0 0 2 2 1 1 Conserved hypothetical ATP binding protein Fe-ADH PF00465.14 gi|57641421|ref|YP_183899.1| - 0.0038 15.9 0.0 0.0093 14.6 0.0 1.6 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase AAA_10 PF12846.2 gi|57641421|ref|YP_183899.1| - 0.0039 16.6 0.4 0.022 14.2 0.3 2.5 1 1 0 1 1 1 1 AAA-like domain 6PF2K PF01591.13 gi|57641421|ref|YP_183899.1| - 0.0056 15.7 0.0 0.017 14.2 0.0 1.9 1 0 0 1 1 1 1 6-phosphofructo-2-kinase AAA_18 PF13238.1 gi|57641421|ref|YP_183899.1| - 0.01 16.1 0.2 0.064 13.5 0.0 2.5 2 1 0 2 2 1 1 AAA domain KTI12 PF08433.5 gi|57641421|ref|YP_183899.1| - 0.011 14.9 0.0 0.011 14.9 0.0 2.9 3 1 1 4 4 4 0 Chromatin associated protein KTI12 Thymidylate_kin PF02223.12 gi|57641421|ref|YP_183899.1| - 0.011 15.0 2.0 0.014 14.7 0.1 2.1 2 0 0 2 2 1 0 Thymidylate kinase AAA_30 PF13604.1 gi|57641421|ref|YP_183899.1| - 0.015 14.9 2.3 0.027 14.0 0.0 2.5 4 0 0 4 4 3 0 AAA domain IMPDH PF00478.20 gi|57641421|ref|YP_183899.1| - 0.018 13.9 0.2 0.041 12.7 0.1 1.6 1 0 0 1 1 1 0 IMP dehydrogenase / GMP reductase domain Fe-ADH_2 PF13685.1 gi|57641421|ref|YP_183899.1| - 0.024 13.9 0.1 4 6.6 0.0 3.1 3 0 0 3 3 3 0 Iron-containing alcohol dehydrogenase AAA PF00004.24 gi|57641421|ref|YP_183899.1| - 0.028 14.6 0.2 0.63 10.2 0.0 3.1 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) TrwB_AAD_bind PF10412.4 gi|57641421|ref|YP_183899.1| - 0.031 12.9 0.0 0.092 11.3 0.0 1.8 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain AAA_31 PF13614.1 gi|57641421|ref|YP_183899.1| - 0.032 14.1 0.0 0.32 10.9 0.0 2.5 3 0 0 3 3 3 0 AAA domain Glyco_trans_4_2 PF13477.1 gi|57641421|ref|YP_183899.1| - 0.033 14.0 0.8 1.3 8.8 0.0 3.0 3 0 0 3 3 3 0 Glycosyl transferase 4-like NACHT PF05729.7 gi|57641421|ref|YP_183899.1| - 0.041 13.5 0.2 0.14 11.8 0.1 2.1 1 1 0 1 1 1 0 NACHT domain RNase_Zc3h12a PF11977.3 gi|57641421|ref|YP_183899.1| - 0.058 13.2 0.0 0.62 9.8 0.0 2.4 2 0 0 2 2 2 0 Zc3h12a-like Ribonuclease NYN domain TPP_enzyme_M PF00205.17 gi|57641421|ref|YP_183899.1| - 0.072 12.8 0.0 0.2 11.4 0.0 1.8 1 1 0 1 1 1 0 Thiamine pyrophosphate enzyme, central domain AAA_19 PF13245.1 gi|57641421|ref|YP_183899.1| - 0.078 12.7 0.0 0.26 11.0 0.0 1.9 1 0 0 1 1 1 0 Part of AAA domain NYN_YacP PF05991.6 gi|57641421|ref|YP_183899.1| - 0.09 12.5 0.6 3.8 7.2 0.1 3.1 2 1 1 3 3 3 0 YacP-like NYN domain YjeF_N PF03853.10 gi|57641421|ref|YP_183899.1| - 0.091 12.3 0.9 0.85 9.1 0.1 2.6 2 1 0 2 2 1 0 YjeF-related protein N-terminus Glyco_trans_4_4 PF13579.1 gi|57641421|ref|YP_183899.1| - 0.15 12.2 0.1 0.36 10.9 0.0 1.7 2 0 0 2 2 1 0 Glycosyl transferase 4-like domain DUF4373 PF14297.1 gi|57641421|ref|YP_183899.1| - 0.27 11.5 1.3 22 5.4 0.0 3.5 3 1 1 4 4 3 0 Domain of unknown function (DUF4373) AAA_25 PF13481.1 gi|57641421|ref|YP_183899.1| - 2.9 7.2 5.0 13 5.1 0.9 3.0 3 1 0 3 3 1 0 AAA domain SAS4 PF15460.1 gi|57641421|ref|YP_183899.1| - 8.4 6.3 8.7 26 4.7 3.3 3.1 2 1 0 2 2 2 0 Something about silencing, SAS, complex subunit 4 AsnC_trans_reg PF01037.16 gi|57641422|ref|YP_183900.1| - 2.1e-17 62.6 0.4 2.4e-17 62.3 0.3 1.0 1 0 0 1 1 1 1 AsnC family BCA_ABC_TP_C PF12399.3 gi|57641422|ref|YP_183900.1| - 0.0092 15.6 0.8 0.018 14.7 0.5 1.6 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter GYD PF08734.6 gi|57641422|ref|YP_183900.1| - 0.035 13.8 0.0 0.04 13.6 0.0 1.2 1 0 0 1 1 1 0 GYD domain Corona_NS2A PF05213.7 gi|57641422|ref|YP_183900.1| - 0.072 12.3 0.3 0.085 12.1 0.2 1.0 1 0 0 1 1 1 0 Coronavirus NS2A protein CxxCxxCC PF03692.10 gi|57641423|ref|YP_183901.1| - 4.6e-19 68.6 1.5 6.7e-19 68.1 1.1 1.3 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain DUF3109 PF11307.3 gi|57641423|ref|YP_183901.1| - 0.13 11.7 1.3 0.18 11.2 0.3 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF3109) Pribosyltran PF00156.22 gi|57641424|ref|YP_183902.1| - 1.9e-21 76.0 0.2 3.8e-21 75.1 0.1 1.5 1 0 0 1 1 1 1 Phosphoribosyl transferase domain HTH_3 PF01381.17 gi|57641424|ref|YP_183902.1| - 1.6e-05 24.6 0.4 3.4e-05 23.6 0.3 1.5 1 0 0 1 1 1 1 Helix-turn-helix PRTase_2 PF15609.1 gi|57641424|ref|YP_183902.1| - 0.02 14.2 0.0 0.024 13.9 0.0 1.2 1 0 0 1 1 1 0 Phosphoribosyl transferase HTH_24 PF13412.1 gi|57641424|ref|YP_183902.1| - 0.031 13.6 0.6 0.082 12.3 0.4 1.7 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_23 PF13384.1 gi|57641424|ref|YP_183902.1| - 0.2 11.3 0.8 0.39 10.4 0.1 1.8 2 0 0 2 2 2 0 Homeodomain-like domain SANTA PF09133.5 gi|57641425|ref|YP_183903.1| - 0.036 14.0 0.7 0.066 13.1 0.2 1.6 1 1 1 2 2 2 0 SANTA (SANT Associated) HTH_24 PF13412.1 gi|57641426|ref|YP_183904.1| - 1.8e-19 68.8 0.2 5.4e-19 67.3 0.2 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|57641426|ref|YP_183904.1| - 1.2e-16 59.9 0.1 2e-16 59.1 0.1 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain AsnC_trans_reg PF01037.16 gi|57641426|ref|YP_183904.1| - 7.1e-13 48.0 0.1 1.1e-12 47.4 0.0 1.3 1 0 0 1 1 1 1 AsnC family HTH_23 PF13384.1 gi|57641426|ref|YP_183904.1| - 1.4e-08 34.1 0.1 2.7e-08 33.2 0.1 1.4 1 0 0 1 1 1 1 Homeodomain-like domain HTH_20 PF12840.2 gi|57641426|ref|YP_183904.1| - 1.9e-08 33.9 0.0 2.8e-08 33.4 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|57641426|ref|YP_183904.1| - 2.6e-08 33.3 0.0 5.2e-08 32.4 0.0 1.4 1 0 0 1 1 1 1 HTH domain HTH_28 PF13518.1 gi|57641426|ref|YP_183904.1| - 3.4e-07 30.1 0.1 5.8e-07 29.3 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_38 PF13936.1 gi|57641426|ref|YP_183904.1| - 2.1e-06 27.1 0.7 3.6e-06 26.4 0.0 1.7 2 0 0 2 2 1 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|57641426|ref|YP_183904.1| - 2.5e-06 26.8 0.0 4.6e-06 25.9 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 TrmB PF01978.14 gi|57641426|ref|YP_183904.1| - 1.2e-05 24.8 0.3 2.9e-05 23.6 0.2 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|57641426|ref|YP_183904.1| - 2.2e-05 24.0 0.0 4.5e-05 23.0 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.15 gi|57641426|ref|YP_183904.1| - 7.7e-05 22.2 0.0 0.00014 21.4 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|57641426|ref|YP_183904.1| - 0.00025 20.6 0.0 0.00041 19.9 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_Tnp_ISL3 PF13542.1 gi|57641426|ref|YP_183904.1| - 0.00036 19.6 0.0 0.0006 18.9 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 GntR PF00392.16 gi|57641426|ref|YP_183904.1| - 0.00045 19.5 0.3 0.00082 18.7 0.2 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_34 PF13601.1 gi|57641426|ref|YP_183904.1| - 0.00051 20.0 0.1 0.0012 18.8 0.0 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_IclR PF09339.5 gi|57641426|ref|YP_183904.1| - 0.00088 18.8 0.0 0.0018 17.8 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_41 PF14502.1 gi|57641426|ref|YP_183904.1| - 0.0011 18.5 0.0 0.0025 17.3 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain TetR_N PF00440.18 gi|57641426|ref|YP_183904.1| - 0.0012 18.4 0.0 0.0027 17.3 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family HTH_30 PF13556.1 gi|57641426|ref|YP_183904.1| - 0.0014 18.2 0.1 0.0024 17.4 0.0 1.3 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain HTH_36 PF13730.1 gi|57641426|ref|YP_183904.1| - 0.0018 18.3 0.1 0.0039 17.3 0.0 1.6 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_DeoR PF08220.7 gi|57641426|ref|YP_183904.1| - 0.002 17.6 0.0 0.0037 16.7 0.0 1.4 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_29 PF13551.1 gi|57641426|ref|YP_183904.1| - 0.002 18.2 0.0 0.0039 17.3 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn helix RepL PF05732.6 gi|57641426|ref|YP_183904.1| - 0.0033 16.6 0.1 0.013 14.7 0.0 1.9 2 1 0 2 2 2 1 Firmicute plasmid replication protein (RepL) PadR PF03551.9 gi|57641426|ref|YP_183904.1| - 0.0042 16.8 0.1 0.065 13.0 0.0 2.2 2 0 0 2 2 2 1 Transcriptional regulator PadR-like family Trp_repressor PF01371.14 gi|57641426|ref|YP_183904.1| - 0.013 15.3 0.1 0.15 11.9 0.0 2.1 2 0 0 2 2 2 0 Trp repressor protein HTH_Mga PF08280.6 gi|57641426|ref|YP_183904.1| - 0.015 15.0 0.0 0.027 14.2 0.0 1.4 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain Fe_dep_repress PF01325.14 gi|57641426|ref|YP_183904.1| - 0.017 15.0 0.0 0.033 14.1 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain Sigma70_r4 PF04545.11 gi|57641426|ref|YP_183904.1| - 0.019 14.2 0.1 0.032 13.5 0.1 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_Tnp_Tc3_2 PF01498.13 gi|57641426|ref|YP_183904.1| - 0.047 13.7 0.0 2.5 8.2 0.0 2.2 2 0 0 2 2 2 0 Transposase HTH_10 PF04967.7 gi|57641426|ref|YP_183904.1| - 0.048 13.2 0.0 0.11 12.1 0.0 1.5 1 0 0 1 1 1 0 HTH DNA binding domain HTH_Crp_2 PF13545.1 gi|57641426|ref|YP_183904.1| - 0.059 13.1 0.0 0.18 11.6 0.0 1.8 2 0 0 2 2 1 0 Crp-like helix-turn-helix domain LexA_DNA_bind PF01726.11 gi|57641426|ref|YP_183904.1| - 0.066 12.7 0.0 0.14 11.7 0.0 1.6 1 0 0 1 1 1 0 LexA DNA binding domain HTH_40 PF14493.1 gi|57641426|ref|YP_183904.1| - 0.068 13.3 0.0 0.13 12.4 0.0 1.6 1 1 0 1 1 1 0 Helix-turn-helix domain EAP30 PF04157.11 gi|57641426|ref|YP_183904.1| - 0.077 12.1 0.0 0.11 11.5 0.0 1.2 1 0 0 1 1 1 0 EAP30/Vps36 family GYD PF08734.6 gi|57641426|ref|YP_183904.1| - 0.093 12.4 0.2 0.67 9.7 0.0 2.0 2 0 0 2 2 2 0 GYD domain HTH_CodY PF08222.6 gi|57641426|ref|YP_183904.1| - 0.095 12.0 0.1 0.17 11.2 0.0 1.4 1 0 0 1 1 1 0 CodY helix-turn-helix domain HTH_39 PF14090.1 gi|57641426|ref|YP_183904.1| - 0.11 11.9 0.1 0.2 11.1 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain FUR PF01475.14 gi|57641426|ref|YP_183904.1| - 0.13 12.2 0.1 0.34 10.8 0.0 1.8 2 0 0 2 2 1 0 Ferric uptake regulator family Metallophos_2 PF12850.2 gi|57641427|ref|YP_183905.1| - 4.4e-14 52.5 0.0 5.6e-14 52.2 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain FUN14 PF04930.10 gi|57641428|ref|YP_183906.1| - 1.8e-22 79.4 7.1 2.1e-22 79.2 4.9 1.1 1 0 0 1 1 1 1 FUN14 family SPC12 PF06645.8 gi|57641428|ref|YP_183906.1| - 0.0092 15.7 1.5 0.0092 15.7 1.0 1.6 2 0 0 2 2 2 1 Microsomal signal peptidase 12 kDa subunit (SPC12) DUF4225 PF13988.1 gi|57641428|ref|YP_183906.1| - 0.51 9.7 4.0 1.1 8.7 0.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF4225) FeoB_C PF07664.7 gi|57641428|ref|YP_183906.1| - 0.94 8.9 3.1 8.6 5.8 0.2 2.3 1 1 1 2 2 2 0 Ferrous iron transport protein B C terminus PadR PF03551.9 gi|57641429|ref|YP_183907.1| - 3.6e-19 68.3 1.0 4.9e-19 67.8 0.7 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_27 PF13463.1 gi|57641429|ref|YP_183907.1| - 1.6e-05 25.1 0.0 2.4e-05 24.5 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_34 PF13601.1 gi|57641429|ref|YP_183907.1| - 8.8e-05 22.4 0.1 0.00013 21.8 0.1 1.4 1 1 0 1 1 1 1 Winged helix DNA-binding domain Mrr_N PF14338.1 gi|57641429|ref|YP_183907.1| - 0.00094 19.2 0.5 0.049 13.7 0.3 2.2 1 1 0 1 1 1 1 Mrr N-terminal domain Replic_Relax PF13814.1 gi|57641429|ref|YP_183907.1| - 0.0026 17.6 0.0 0.0039 17.0 0.0 1.4 1 0 0 1 1 1 1 Replication-relaxation Sulfolobus_pRN PF05584.6 gi|57641429|ref|YP_183907.1| - 0.011 15.6 2.1 0.11 12.4 0.1 2.2 1 1 0 2 2 2 0 Sulfolobus plasmid regulatory protein HTH_5 PF01022.15 gi|57641429|ref|YP_183907.1| - 0.011 15.3 0.0 0.077 12.6 0.0 2.2 1 1 0 1 1 1 0 Bacterial regulatory protein, arsR family Fe_dep_repress PF01325.14 gi|57641429|ref|YP_183907.1| - 0.012 15.5 0.4 0.022 14.7 0.0 1.6 2 0 0 2 2 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_45 PF14947.1 gi|57641429|ref|YP_183907.1| - 0.014 15.2 0.0 0.021 14.6 0.0 1.5 1 1 0 1 1 1 0 Winged helix-turn-helix MarR PF01047.17 gi|57641429|ref|YP_183907.1| - 0.029 14.0 0.0 0.055 13.1 0.0 1.5 1 0 0 1 1 1 0 MarR family DUF3116 PF11313.3 gi|57641429|ref|YP_183907.1| - 0.035 13.6 1.4 0.074 12.6 0.9 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF3116) TrmB PF01978.14 gi|57641429|ref|YP_183907.1| - 0.036 13.7 0.6 0.19 11.4 0.4 2.0 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HxlR PF01638.12 gi|57641429|ref|YP_183907.1| - 0.042 13.4 0.6 0.13 11.8 0.2 2.0 1 1 1 2 2 2 0 HxlR-like helix-turn-helix zf-ribbon_3 PF13248.1 gi|57641430|ref|YP_183908.1| - 0.00021 20.4 1.6 0.00029 19.9 1.1 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|57641430|ref|YP_183908.1| - 0.00065 19.4 0.6 0.00071 19.3 0.4 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|57641430|ref|YP_183908.1| - 0.0014 18.0 2.2 0.0022 17.4 1.5 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DNA_RNApol_7kD PF03604.8 gi|57641430|ref|YP_183908.1| - 0.0063 15.9 2.9 0.012 15.0 2.0 1.4 1 0 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit Toxin_5 PF05294.8 gi|57641430|ref|YP_183908.1| - 0.016 15.4 2.4 0.021 14.9 1.6 1.2 1 0 0 1 1 1 0 Scorpion short toxin Ribosomal_L40e PF01020.12 gi|57641430|ref|YP_183908.1| - 0.12 12.0 4.6 0.16 11.5 3.2 1.4 1 0 0 1 1 1 0 Ribosomal L40e family UPF0547 PF10571.4 gi|57641430|ref|YP_183908.1| - 0.17 11.6 3.0 0.28 10.9 2.1 1.4 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 RNA_POL_M_15KD PF02150.11 gi|57641430|ref|YP_183908.1| - 0.22 11.2 3.3 6.1 6.6 2.9 2.1 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit zf-C2H2_3 PF13878.1 gi|57641430|ref|YP_183908.1| - 1.2 8.7 3.3 3 7.5 2.5 1.5 1 1 1 2 2 2 0 zinc-finger of acetyl-transferase ESCO zf-nanos PF05741.8 gi|57641430|ref|YP_183908.1| - 1.3 9.0 4.0 1.7 8.6 0.2 2.0 1 1 1 2 2 2 0 Nanos RNA binding domain OrfB_Zn_ribbon PF07282.6 gi|57641430|ref|YP_183908.1| - 1.3 8.7 3.6 5.2 6.8 0.3 2.0 1 1 2 3 3 3 0 Putative transposase DNA-binding domain Zn_Tnp_IS1595 PF12760.2 gi|57641430|ref|YP_183908.1| - 1.4 8.7 5.2 4.3 7.2 3.6 1.8 1 1 0 1 1 1 0 Transposase zinc-ribbon domain YhfH PF14149.1 gi|57641430|ref|YP_183908.1| - 1.7 8.4 7.0 1.2 8.9 0.6 2.3 2 1 0 2 2 2 0 YhfH-like protein Ribosomal_S2 PF00318.15 gi|57641431|ref|YP_183909.1| - 2.7e-42 144.3 0.0 3e-20 72.3 0.1 2.0 1 1 1 2 2 2 2 Ribosomal protein S2 Enolase_N PF03952.11 gi|57641432|ref|YP_183910.1| - 3.3e-28 98.2 0.2 7.7e-27 93.8 0.2 2.2 1 1 0 1 1 1 1 Enolase, N-terminal domain Enolase_C PF00113.17 gi|57641432|ref|YP_183910.1| - 1.8e-07 30.4 0.0 3e-07 29.6 0.0 1.3 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain LytR_cpsA_psr PF03816.9 gi|57641432|ref|YP_183910.1| - 0.064 13.1 0.0 0.099 12.5 0.0 1.3 1 0 0 1 1 1 0 Cell envelope-related transcriptional attenuator domain RNA_pol_Rpb6 PF01192.17 gi|57641433|ref|YP_183911.1| - 1.9e-17 62.7 0.1 2.1e-17 62.6 0.0 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb6 RNA_pol_N PF01194.12 gi|57641434|ref|YP_183912.1| - 5.3e-31 106.4 0.5 6e-31 106.2 0.3 1.0 1 0 0 1 1 1 1 RNA polymerases N / 8 kDa subunit Chordopox_RPO7 PF05864.7 gi|57641434|ref|YP_183912.1| - 0.0022 18.0 0.3 0.0035 17.4 0.2 1.4 1 1 0 1 1 1 1 Chordopoxvirus DNA-directed RNA polymerase 7 kDa polypeptide (RPO7) Ribosomal_S9 PF00380.14 gi|57641435|ref|YP_183913.1| - 3.2e-35 120.9 0.7 3.7e-35 120.8 0.5 1.0 1 0 0 1 1 1 1 Ribosomal protein S9/S16 Ribosomal_L13 PF00572.13 gi|57641436|ref|YP_183914.1| - 5.2e-29 100.8 0.0 7.3e-29 100.4 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L13 Ribosomal_L18e PF00828.14 gi|57641437|ref|YP_183915.1| - 1e-15 58.2 0.7 2.5e-15 56.9 0.4 1.6 1 1 1 2 2 2 1 Ribosomal protein L18e/L15 RNA_pol_A_bac PF01000.21 gi|57641438|ref|YP_183916.1| - 6.5e-28 97.1 0.0 1.4e-27 96.1 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb3/RpoA insert domain RNA_pol_L PF01193.19 gi|57641438|ref|YP_183916.1| - 3.8e-17 61.1 0.0 4.9e-17 60.8 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Ribosomal_S11 PF00411.14 gi|57641439|ref|YP_183917.1| - 5.6e-43 145.6 0.1 7e-43 145.2 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein S11 S4 PF01479.20 gi|57641440|ref|YP_183918.1| - 5.1e-17 61.0 0.2 5.1e-17 61.0 0.1 2.3 3 0 0 3 3 3 1 S4 domain Ribosomal_S4 PF00163.14 gi|57641440|ref|YP_183918.1| - 0.0017 18.6 6.3 0.0017 18.6 4.4 1.8 2 1 0 2 2 2 1 Ribosomal protein S4/S9 N-terminal domain PEARLI-4 PF05278.7 gi|57641440|ref|YP_183918.1| - 0.036 13.4 2.0 0.053 12.8 1.4 1.2 1 0 0 1 1 1 0 Arabidopsis phospholipase-like protein (PEARLI 4) Ribosomal_S13 PF00416.17 gi|57641441|ref|YP_183919.1| - 8.7e-32 109.7 0.0 1.1e-31 109.4 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S13/S18 MTS PF05175.9 gi|57641442|ref|YP_183920.1| - 1e-48 164.9 0.0 1.2e-48 164.7 0.0 1.0 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_26 PF13659.1 gi|57641442|ref|YP_183920.1| - 1.6e-14 53.9 0.0 2.8e-14 53.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|57641442|ref|YP_183920.1| - 2.8e-11 43.2 0.0 3.5e-11 42.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|57641442|ref|YP_183920.1| - 8.4e-11 41.5 0.0 1.1e-10 41.1 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_18 PF12847.2 gi|57641442|ref|YP_183920.1| - 9.6e-09 35.8 0.0 1.5e-08 35.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|57641442|ref|YP_183920.1| - 1e-06 28.2 0.0 1.3e-06 27.9 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 CMAS PF02353.15 gi|57641442|ref|YP_183920.1| - 1.4e-05 24.3 0.0 1.8e-05 23.9 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_11 PF08241.7 gi|57641442|ref|YP_183920.1| - 2.1e-05 24.9 0.0 4.6e-05 23.8 0.0 1.5 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|57641442|ref|YP_183920.1| - 5.5e-05 23.5 0.0 9e-05 22.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_16 PF10294.4 gi|57641442|ref|YP_183920.1| - 6.3e-05 22.4 0.0 9.1e-05 21.9 0.0 1.2 1 0 0 1 1 1 1 Putative methyltransferase Methyltransf_25 PF13649.1 gi|57641442|ref|YP_183920.1| - 0.00011 22.4 0.0 0.00019 21.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|57641442|ref|YP_183920.1| - 0.00015 21.3 0.0 0.00028 20.5 0.0 1.4 1 1 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_23 PF13489.1 gi|57641442|ref|YP_183920.1| - 0.0002 21.1 0.0 0.00033 20.4 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain tRNA_U5-meth_tr PF05958.6 gi|57641442|ref|YP_183920.1| - 0.00023 19.9 0.0 0.00033 19.4 0.0 1.1 1 0 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase Met_10 PF02475.11 gi|57641442|ref|YP_183920.1| - 0.00036 20.1 0.0 0.0004 20.0 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein UPF0020 PF01170.13 gi|57641442|ref|YP_183920.1| - 0.0044 16.6 0.0 0.0065 16.0 0.0 1.3 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Ubie_methyltran PF01209.13 gi|57641442|ref|YP_183920.1| - 0.0051 15.9 0.0 0.0059 15.7 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family TehB PF03848.9 gi|57641442|ref|YP_183920.1| - 0.013 14.6 0.0 0.018 14.2 0.0 1.2 1 0 0 1 1 1 0 Tellurite resistance protein TehB N6_Mtase PF02384.11 gi|57641442|ref|YP_183920.1| - 0.041 12.9 0.0 0.054 12.5 0.0 1.2 1 0 0 1 1 1 0 N-6 DNA Methylase Methyltransf_15 PF09445.5 gi|57641442|ref|YP_183920.1| - 0.05 13.1 0.0 0.065 12.7 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase FmrO PF07091.6 gi|57641442|ref|YP_183920.1| - 0.088 11.7 0.0 0.13 11.2 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA methyltransferase (FmrO) DUF3533 PF12051.3 gi|57641443|ref|YP_183921.1| - 0.34 9.6 6.1 0.6 8.8 4.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3533) TruB_N PF01509.13 gi|57641444|ref|YP_183922.1| - 1.3e-25 90.3 0.2 6.1e-16 58.9 0.0 3.1 1 1 1 2 2 2 2 TruB family pseudouridylate synthase (N terminal domain) DKCLD PF08068.7 gi|57641444|ref|YP_183922.1| - 3.7e-23 81.1 0.2 1.1e-22 79.6 0.2 1.8 2 0 0 2 2 2 1 DKCLD (NUC011) domain PUA PF01472.15 gi|57641444|ref|YP_183922.1| - 3.4e-21 74.7 0.9 9.2e-21 73.3 0.6 1.8 1 0 0 1 1 1 1 PUA domain SIR2_2 PF13289.1 gi|57641444|ref|YP_183922.1| - 0.042 13.7 0.0 0.096 12.5 0.0 1.6 1 0 0 1 1 1 0 SIR2-like domain YcfA PF07927.7 gi|57641445|ref|YP_183923.1| - 1.4e-14 53.7 0.9 1.8e-14 53.3 0.6 1.1 1 0 0 1 1 1 1 YcfA-like protein UPF0150 PF03681.10 gi|57641446|ref|YP_183924.1| - 2.3e-12 46.3 3.5 5e-12 45.2 2.4 1.6 1 1 0 1 1 1 1 Uncharacterised protein family (UPF0150) DREPP PF05558.7 gi|57641446|ref|YP_183924.1| - 0.03 14.1 0.2 0.031 14.1 0.2 1.1 1 0 0 1 1 1 0 DREPP plasma membrane polypeptide DUF2191 PF09957.4 gi|57641446|ref|YP_183924.1| - 0.033 13.9 0.5 0.1 12.4 0.4 1.8 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2191) DUF3832 PF12909.2 gi|57641446|ref|YP_183924.1| - 0.035 14.1 0.1 0.04 13.9 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3832) SHNi-TPR PF10516.4 gi|57641446|ref|YP_183924.1| - 0.055 12.7 0.1 0.093 11.9 0.1 1.4 1 0 0 1 1 1 0 SHNi-TPR TPR_12 PF13424.1 gi|57641446|ref|YP_183924.1| - 0.12 12.3 0.1 0.17 11.8 0.1 1.2 1 0 0 1 1 1 0 Tetratricopeptide repeat adh_short PF00106.20 gi|57641447|ref|YP_183925.1| - 3.3e-30 105.1 0.0 4e-30 104.9 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|57641447|ref|YP_183925.1| - 2.3e-11 43.7 0.0 3e-11 43.3 0.0 1.1 1 0 0 1 1 1 1 KR domain NAD_binding_10 PF13460.1 gi|57641447|ref|YP_183925.1| - 4.9e-09 36.4 0.0 8.2e-09 35.7 0.0 1.3 1 0 0 1 1 1 1 NADH(P)-binding adh_short_C2 PF13561.1 gi|57641447|ref|YP_183925.1| - 7.1e-08 32.5 0.0 8.7e-08 32.2 0.0 1.2 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase Epimerase PF01370.16 gi|57641447|ref|YP_183925.1| - 3.1e-07 30.0 0.0 4.5e-07 29.5 0.0 1.5 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_4 PF07993.7 gi|57641447|ref|YP_183925.1| - 3.4e-05 22.9 0.1 7.3e-05 21.8 0.0 1.7 1 1 0 1 1 1 1 Male sterility protein F420_oxidored PF03807.12 gi|57641447|ref|YP_183925.1| - 0.00012 22.4 0.0 0.00023 21.5 0.0 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NmrA PF05368.8 gi|57641447|ref|YP_183925.1| - 0.00025 20.3 0.0 0.00035 19.9 0.0 1.2 1 0 0 1 1 1 1 NmrA-like family TrkA_N PF02254.13 gi|57641447|ref|YP_183925.1| - 0.00036 20.5 0.0 0.00071 19.5 0.0 1.5 1 1 0 1 1 1 1 TrkA-N domain Polysacc_synt_2 PF02719.10 gi|57641447|ref|YP_183925.1| - 0.00077 18.4 0.0 0.00096 18.1 0.0 1.1 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.12 gi|57641447|ref|YP_183925.1| - 0.003 16.5 0.0 0.0038 16.1 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain Shikimate_DH PF01488.15 gi|57641447|ref|YP_183925.1| - 0.0051 16.9 0.0 0.0072 16.4 0.0 1.3 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase ApbA PF02558.11 gi|57641447|ref|YP_183925.1| - 0.0093 15.4 0.0 0.022 14.2 0.0 1.8 1 1 0 1 1 1 1 Ketopantoate reductase PanE/ApbA 3Beta_HSD PF01073.14 gi|57641447|ref|YP_183925.1| - 0.029 13.0 0.0 0.04 12.6 0.0 1.3 1 0 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family DUF1776 PF08643.5 gi|57641447|ref|YP_183925.1| - 0.034 13.2 0.0 0.59 9.2 0.0 2.0 2 0 0 2 2 2 0 Fungal family of unknown function (DUF1776) DEDD_Tnp_IS110 PF01548.12 gi|57641447|ref|YP_183925.1| - 0.037 13.6 0.0 0.83 9.3 0.0 2.2 2 0 0 2 2 2 0 Transposase 2-Hacid_dh_C PF02826.14 gi|57641447|ref|YP_183925.1| - 0.11 11.6 0.0 0.14 11.2 0.0 1.2 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 3HCDH_N PF02737.13 gi|57641447|ref|YP_183925.1| - 0.14 11.8 0.0 0.21 11.2 0.0 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Ribosomal_L14e PF01929.12 gi|57641448|ref|YP_183926.1| - 9.8e-05 22.6 0.0 0.00015 22.0 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L14 KOW PF00467.24 gi|57641448|ref|YP_183926.1| - 0.0016 18.0 2.7 0.0027 17.3 1.8 1.3 1 0 0 1 1 1 1 KOW motif Cytidylate_kin2 PF13189.1 gi|57641449|ref|YP_183927.1| - 1.2e-27 96.9 2.2 1.3e-26 93.6 1.5 1.9 1 1 0 1 1 1 1 Cytidylate kinase-like family AAA_18 PF13238.1 gi|57641449|ref|YP_183927.1| - 2.7e-16 60.0 0.2 3.6e-16 59.6 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|57641449|ref|YP_183927.1| - 4.8e-14 53.2 0.2 8.2e-14 52.4 0.2 1.5 1 1 0 1 1 1 1 AAA domain Cytidylate_kin PF02224.13 gi|57641449|ref|YP_183927.1| - 6.9e-10 38.5 0.3 9.4e-10 38.1 0.2 1.2 1 0 0 1 1 1 1 Cytidylate kinase AAA_33 PF13671.1 gi|57641449|ref|YP_183927.1| - 3.1e-05 23.8 0.2 0.00031 20.6 0.1 2.0 1 1 0 1 1 1 1 AAA domain ADK PF00406.17 gi|57641449|ref|YP_183927.1| - 6.2e-05 22.9 0.0 0.0001 22.1 0.0 1.4 1 0 0 1 1 1 1 Adenylate kinase CoaE PF01121.15 gi|57641449|ref|YP_183927.1| - 0.00015 21.2 0.4 0.24 10.7 0.1 2.1 1 1 1 2 2 2 2 Dephospho-CoA kinase AAA_28 PF13521.1 gi|57641449|ref|YP_183927.1| - 0.0028 17.6 0.1 0.0066 16.4 0.0 1.6 2 0 0 2 2 2 1 AAA domain NB-ARC PF00931.17 gi|57641449|ref|YP_183927.1| - 0.011 14.6 0.0 0.014 14.3 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain SinI PF08671.5 gi|57641449|ref|YP_183927.1| - 0.015 14.6 0.4 0.18 11.2 0.0 2.5 2 0 0 2 2 2 0 Anti-repressor SinI SKI PF01202.17 gi|57641449|ref|YP_183927.1| - 0.029 14.2 0.5 0.085 12.7 0.4 1.7 1 1 0 1 1 1 0 Shikimate kinase AAA_14 PF13173.1 gi|57641449|ref|YP_183927.1| - 0.036 13.9 0.2 0.8 9.6 0.1 2.3 1 1 0 1 1 1 0 AAA domain UPF0079 PF02367.12 gi|57641449|ref|YP_183927.1| - 0.044 13.4 0.1 0.08 12.5 0.1 1.5 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 PRK PF00485.13 gi|57641449|ref|YP_183927.1| - 0.063 12.8 0.3 0.3 10.6 0.0 2.0 1 1 1 2 2 2 0 Phosphoribulokinase / Uridine kinase family Thymidylate_kin PF02223.12 gi|57641449|ref|YP_183927.1| - 0.07 12.5 0.1 8.6 5.6 0.0 2.2 2 0 0 2 2 2 0 Thymidylate kinase AAA_22 PF13401.1 gi|57641449|ref|YP_183927.1| - 0.1 12.7 0.0 0.17 12.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain Ribosomal_L34e PF01199.13 gi|57641450|ref|YP_183928.1| - 6.3e-27 93.6 6.2 7e-27 93.4 4.3 1.0 1 0 0 1 1 1 1 Ribosomal protein L34e DZR PF12773.2 gi|57641450|ref|YP_183928.1| - 0.01 15.6 0.3 0.016 15.0 0.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon Sgf11 PF08209.6 gi|57641450|ref|YP_183928.1| - 0.028 13.7 2.1 2.4 7.5 0.1 2.4 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) Ima1_N PF09779.4 gi|57641450|ref|YP_183928.1| - 0.042 14.3 0.8 0.074 13.5 0.3 1.5 2 0 0 2 2 2 0 Ima1 N-terminal domain PBCV_basic_adap PF08789.5 gi|57641450|ref|YP_183928.1| - 0.082 12.5 0.5 0.18 11.4 0.3 1.6 1 0 0 1 1 1 0 PBCV-specific basic adaptor domain DUF106 PF01956.11 gi|57641451|ref|YP_183929.1| - 7.1e-29 100.4 4.3 8.4e-29 100.2 3.0 1.0 1 0 0 1 1 1 1 Integral membrane protein DUF106 60KD_IMP PF02096.15 gi|57641451|ref|YP_183929.1| - 3.9e-10 39.7 2.5 4.6e-10 39.4 1.7 1.2 1 0 0 1 1 1 1 60Kd inner membrane protein DUF2208 PF09973.4 gi|57641451|ref|YP_183929.1| - 2e-05 23.9 1.4 2.8e-05 23.4 0.9 1.2 1 0 0 1 1 1 1 Predicted membrane protein (DUF2208) DUF4199 PF13858.1 gi|57641451|ref|YP_183929.1| - 3.6e-05 23.7 0.8 3.6e-05 23.7 0.6 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF4199) DUF2232 PF09991.4 gi|57641451|ref|YP_183929.1| - 8.4e-05 21.6 0.6 0.0001 21.4 0.4 1.1 1 0 0 1 1 1 1 Predicted membrane protein (DUF2232) DUF2344 PF10105.4 gi|57641451|ref|YP_183929.1| - 0.017 14.5 0.1 0.024 14.1 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2344) Kei1 PF08552.6 gi|57641451|ref|YP_183929.1| - 0.033 13.8 0.0 0.033 13.8 0.0 1.4 2 0 0 2 2 1 0 Inositolphosphorylceramide synthase subunit Kei1 NAGLU_C PF12972.2 gi|57641451|ref|YP_183929.1| - 0.045 13.1 2.6 0.066 12.5 1.8 1.1 1 0 0 1 1 1 0 Alpha-N-acetylglucosaminidase (NAGLU) C-terminal domain M16C_assoc PF08367.6 gi|57641451|ref|YP_183929.1| - 0.15 10.8 8.5 0.2 10.4 5.9 1.1 1 0 0 1 1 1 0 Peptidase M16C associated DPM3 PF08285.6 gi|57641451|ref|YP_183929.1| - 0.32 10.8 0.0 0.32 10.8 0.0 2.2 3 0 0 3 3 3 0 Dolichol-phosphate mannosyltransferase subunit 3 (DPM3) DUF3867 PF12983.2 gi|57641451|ref|YP_183929.1| - 0.36 10.7 6.7 0.51 10.2 4.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3867) SBP_bac_7 PF03480.8 gi|57641451|ref|YP_183929.1| - 0.47 9.5 5.0 0.63 9.0 3.4 1.1 1 0 0 1 1 1 0 Bacterial extracellular solute-binding protein, family 7 DUF2681 PF10883.3 gi|57641451|ref|YP_183929.1| - 0.67 10.1 7.4 0.41 10.8 3.5 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF2681) DUF1090 PF06476.7 gi|57641451|ref|YP_183929.1| - 0.77 9.4 10.7 1 9.0 7.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1090) DUF1049 PF06305.6 gi|57641451|ref|YP_183929.1| - 2 7.9 5.0 35 3.9 3.5 2.7 1 1 0 1 1 1 0 Protein of unknown function (DUF1049) OmpH PF03938.9 gi|57641451|ref|YP_183929.1| - 2.2 8.1 15.3 3.2 7.6 10.6 1.1 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) DUF4118 PF13493.1 gi|57641451|ref|YP_183929.1| - 8.7 6.6 10.1 1.3 9.2 2.4 2.4 2 1 0 2 2 2 0 Domain of unknown function (DUF4118) AAA_18 PF13238.1 gi|57641452|ref|YP_183930.1| - 2.1e-19 70.0 0.5 3e-19 69.5 0.1 1.4 2 0 0 2 2 1 1 AAA domain AAA_17 PF13207.1 gi|57641452|ref|YP_183930.1| - 1.1e-07 32.6 0.1 1.8e-07 32.0 0.1 1.6 1 1 0 1 1 1 1 AAA domain AAA_14 PF13173.1 gi|57641452|ref|YP_183930.1| - 0.00011 22.0 0.5 0.00045 20.1 0.3 2.0 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|57641452|ref|YP_183930.1| - 0.0012 19.0 0.1 0.0061 16.7 0.0 2.1 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Zeta_toxin PF06414.7 gi|57641452|ref|YP_183930.1| - 0.0013 17.8 0.3 0.0086 15.1 0.0 1.9 2 0 0 2 2 2 1 Zeta toxin AAA_33 PF13671.1 gi|57641452|ref|YP_183930.1| - 0.0021 17.9 0.1 0.0034 17.2 0.1 1.4 1 1 0 1 1 1 1 AAA domain AAA_5 PF07728.9 gi|57641452|ref|YP_183930.1| - 0.0022 17.7 0.5 0.0057 16.3 0.1 2.0 1 1 1 2 2 2 1 AAA domain (dynein-related subfamily) NTPase_1 PF03266.10 gi|57641452|ref|YP_183930.1| - 0.0022 17.7 0.1 0.0061 16.2 0.1 1.8 1 0 0 1 1 1 1 NTPase ArgK PF03308.11 gi|57641452|ref|YP_183930.1| - 0.011 14.5 0.1 0.026 13.2 0.1 1.6 1 0 0 1 1 1 0 ArgK protein AAA_28 PF13521.1 gi|57641452|ref|YP_183930.1| - 0.012 15.5 0.2 0.03 14.2 0.0 1.6 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.17 gi|57641452|ref|YP_183930.1| - 0.019 13.8 0.1 0.03 13.2 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain Viral_helicase1 PF01443.13 gi|57641452|ref|YP_183930.1| - 0.026 14.0 0.0 0.037 13.5 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase MMR_HSR1 PF01926.18 gi|57641452|ref|YP_183930.1| - 0.026 14.4 0.4 0.056 13.4 0.3 1.9 1 1 0 1 1 1 0 50S ribosome-binding GTPase KTI12 PF08433.5 gi|57641452|ref|YP_183930.1| - 0.028 13.6 0.0 0.041 13.0 0.0 1.4 1 0 0 1 1 1 0 Chromatin associated protein KTI12 APS_kinase PF01583.15 gi|57641452|ref|YP_183930.1| - 0.033 13.8 0.2 0.3 10.7 0.0 2.2 2 0 0 2 2 2 0 Adenylylsulphate kinase AAA_16 PF13191.1 gi|57641452|ref|YP_183930.1| - 0.043 13.7 1.2 0.12 12.4 0.9 2.0 1 1 0 1 1 1 0 AAA ATPase domain SRP54 PF00448.17 gi|57641452|ref|YP_183930.1| - 0.054 12.9 0.0 0.082 12.3 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_3 PF07726.6 gi|57641452|ref|YP_183930.1| - 0.073 12.6 0.1 0.27 10.8 0.0 1.9 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.1 gi|57641452|ref|YP_183930.1| - 0.09 12.5 0.6 0.37 10.5 0.3 2.1 2 0 0 2 2 2 0 Part of AAA domain AAA_22 PF13401.1 gi|57641452|ref|YP_183930.1| - 0.11 12.6 0.9 0.18 11.9 0.6 1.9 1 1 0 1 1 1 0 AAA domain PAS_9 PF13426.1 gi|57641452|ref|YP_183930.1| - 0.13 12.7 0.0 0.2 12.0 0.0 1.4 1 0 0 1 1 1 0 PAS domain Guanylate_kin PF00625.16 gi|57641452|ref|YP_183930.1| - 0.13 11.6 0.7 1.8 7.9 0.0 2.1 2 0 0 2 2 2 0 Guanylate kinase SKI PF01202.17 gi|57641452|ref|YP_183930.1| - 0.35 10.7 4.2 14 5.5 2.9 2.2 1 1 0 1 1 1 0 Shikimate kinase SecY PF00344.15 gi|57641453|ref|YP_183931.1| - 6.2e-93 311.4 18.5 7.4e-93 311.2 12.8 1.1 1 0 0 1 1 1 1 SecY translocase Plug_translocon PF10559.4 gi|57641453|ref|YP_183931.1| - 4.2e-12 45.3 0.5 1.6e-11 43.5 0.4 2.1 1 0 0 1 1 1 1 Plug domain of Sec61p Ninjurin PF04923.7 gi|57641453|ref|YP_183931.1| - 0.13 12.0 0.1 0.45 10.2 0.0 2.0 2 0 0 2 2 2 0 Ninjurin Ribosomal_L18e PF00828.14 gi|57641454|ref|YP_183932.1| - 2.1e-31 109.0 0.7 2.7e-31 108.6 0.5 1.2 1 0 0 1 1 1 1 Ribosomal protein L18e/L15 Ribosomal_L30 PF00327.15 gi|57641455|ref|YP_183933.1| - 1.3e-18 66.3 0.3 2.3e-18 65.4 0.2 1.5 1 0 0 1 1 1 1 Ribosomal protein L30p/L7e CBS PF00571.23 gi|57641455|ref|YP_183933.1| - 0.026 14.3 0.2 0.13 12.0 0.0 2.2 2 1 0 2 2 2 0 CBS domain Ribosomal_S5_C PF03719.10 gi|57641456|ref|YP_183934.1| - 3.5e-24 83.8 0.2 9.3e-24 82.5 0.0 1.8 2 0 0 2 2 2 1 Ribosomal protein S5, C-terminal domain Ribosomal_S5 PF00333.15 gi|57641456|ref|YP_183934.1| - 5.7e-21 74.0 1.2 1.3e-20 72.9 0.8 1.6 1 0 0 1 1 1 1 Ribosomal protein S5, N-terminal domain Ribosomal_L18p PF00861.17 gi|57641457|ref|YP_183935.1| - 7.7e-34 116.4 0.0 1e-33 116.0 0.0 1.2 1 0 0 1 1 1 1 Ribosomal L18p/L5e family Ribosomal_L18_c PF14204.1 gi|57641457|ref|YP_183935.1| - 3.3e-14 53.2 0.5 3.3e-14 53.2 0.3 1.6 2 0 0 2 2 2 1 Ribosomal L18 C-terminal region TaqI_C PF12950.2 gi|57641457|ref|YP_183935.1| - 0.13 12.0 0.1 16 5.2 0.1 2.2 2 0 0 2 2 2 0 TaqI-like C-terminal specificity domain Ribosomal_L19e PF01280.15 gi|57641458|ref|YP_183936.1| - 1.7e-59 199.8 12.8 1.9e-59 199.6 8.9 1.0 1 0 0 1 1 1 1 Ribosomal protein L19e DUF1707 PF08044.6 gi|57641458|ref|YP_183936.1| - 0.043 13.5 0.5 1.8 8.3 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF1707) HTH_17 PF12728.2 gi|57641458|ref|YP_183936.1| - 9.7 6.5 7.1 1.9e+02 2.4 1.7 3.7 3 1 0 3 3 3 0 Helix-turn-helix domain Ribosomal_L32e PF01655.13 gi|57641459|ref|YP_183937.1| - 1.1e-43 147.7 0.8 1.3e-43 147.4 0.6 1.1 1 0 0 1 1 1 1 Ribosomal protein L32 Ribosomal_L6 PF00347.18 gi|57641460|ref|YP_183938.1| - 3.1e-36 123.7 10.9 2.3e-19 69.6 3.0 2.1 2 0 0 2 2 2 2 Ribosomal protein L6 YbbR PF07949.7 gi|57641460|ref|YP_183938.1| - 0.0032 17.5 6.1 0.63 10.1 0.1 3.2 2 1 0 3 3 3 2 YbbR-like protein DNA_pol3_beta PF00712.14 gi|57641460|ref|YP_183938.1| - 0.0093 15.8 0.0 2.6 7.9 0.0 2.2 2 0 0 2 2 2 2 DNA polymerase III beta subunit, N-terminal domain DUF4469 PF14734.1 gi|57641460|ref|YP_183938.1| - 0.054 13.3 2.8 0.94 9.3 0.2 2.5 2 2 0 2 2 2 0 Domain of unknown function (DUF4469) with IG-like fold DUF320 PF03777.8 gi|57641460|ref|YP_183938.1| - 0.058 13.1 0.4 4.9 7.0 0.0 2.3 2 0 0 2 2 2 0 Small secreted domain (DUF320) HSP20 PF00011.16 gi|57641460|ref|YP_183938.1| - 0.21 11.4 3.7 12 5.7 0.2 3.4 3 1 1 4 4 4 0 Hsp20/alpha crystallin family Ribosomal_S8 PF00410.14 gi|57641461|ref|YP_183939.1| - 7.1e-28 97.0 0.0 9e-28 96.6 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S8 Ribosomal_S14 PF00253.16 gi|57641462|ref|YP_183940.1| - 3.1e-16 58.4 5.4 3.3e-16 58.4 3.8 1.0 1 0 0 1 1 1 1 Ribosomal protein S14p/S29e zf-FPG_IleRS PF06827.9 gi|57641462|ref|YP_183940.1| - 0.0098 15.5 4.1 0.017 14.7 2.8 1.4 1 0 0 1 1 1 1 Zinc finger found in FPG and IleRS DUF2039 PF10217.4 gi|57641462|ref|YP_183940.1| - 0.05 13.6 2.1 2 8.4 0.0 2.0 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2039) DZR PF12773.2 gi|57641462|ref|YP_183940.1| - 0.1 12.4 0.5 0.22 11.3 0.4 1.5 1 1 0 1 1 1 0 Double zinc ribbon zf-dskA_traR PF01258.12 gi|57641462|ref|YP_183940.1| - 1.2 8.8 4.7 3.6 7.4 3.3 1.7 1 1 0 1 1 1 0 Prokaryotic dksA/traR C4-type zinc finger Ribosomal_L5_C PF00673.16 gi|57641463|ref|YP_183941.1| - 1.5e-29 101.5 0.1 3e-29 100.6 0.0 1.5 2 0 0 2 2 2 1 ribosomal L5P family C-terminus Ribosomal_L5 PF00281.14 gi|57641463|ref|YP_183941.1| - 9.7e-21 73.3 0.2 3.3e-20 71.6 0.1 1.8 2 0 0 2 2 2 1 Ribosomal protein L5 Ribosomal_S4e PF00900.15 gi|57641464|ref|YP_183942.1| - 1.5e-28 98.2 0.1 2.8e-28 97.3 0.1 1.5 1 0 0 1 1 1 1 Ribosomal family S4e RS4NT PF08071.7 gi|57641464|ref|YP_183942.1| - 2.3e-19 68.9 8.6 4.4e-19 68.0 6.0 1.5 1 0 0 1 1 1 1 RS4NT (NUC023) domain S4 PF01479.20 gi|57641464|ref|YP_183942.1| - 6.1e-13 47.9 0.1 6.1e-13 47.9 0.1 1.8 2 0 0 2 2 2 1 S4 domain KOW PF00467.24 gi|57641464|ref|YP_183942.1| - 0.00027 20.5 0.4 0.00072 19.1 0.3 1.8 1 0 0 1 1 1 1 KOW motif KOW PF00467.24 gi|57641465|ref|YP_183943.1| - 7.6e-09 34.9 6.2 7.6e-09 34.9 4.3 1.7 2 0 0 2 2 2 1 KOW motif MS_channel PF00924.13 gi|57641465|ref|YP_183943.1| - 0.17 11.2 0.1 0.23 10.7 0.1 1.2 1 0 0 1 1 1 0 Mechanosensitive ion channel Ribosomal_L14 PF00238.14 gi|57641466|ref|YP_183944.1| - 4.6e-36 123.2 0.2 5.1e-36 123.0 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L14p/L23e Ribosomal_S17 PF00366.15 gi|57641467|ref|YP_183945.1| - 4e-27 94.0 4.5 5.2e-27 93.6 3.1 1.1 1 0 0 1 1 1 1 Ribosomal protein S17 zf-C3H1 PF10650.4 gi|57641467|ref|YP_183945.1| - 0.1 12.1 0.6 0.1 12.1 0.4 1.6 2 0 0 2 2 2 0 Putative zinc-finger domain Ribosomal_S27 PF01599.14 gi|57641467|ref|YP_183945.1| - 0.14 11.9 1.4 0.17 11.7 0.0 1.8 2 0 0 2 2 2 0 Ribosomal protein S27a UPF0086 PF01868.11 gi|57641468|ref|YP_183946.1| - 4.1e-27 93.6 0.3 6.1e-27 93.0 0.2 1.3 1 0 0 1 1 1 1 Domain of unknown function UPF0086 SUI1 PF01253.17 gi|57641469|ref|YP_183947.1| - 1.2e-23 82.6 0.8 1.5e-23 82.4 0.5 1.1 1 0 0 1 1 1 1 Translation initiation factor SUI1 Transketolase_C PF02780.15 gi|57641469|ref|YP_183947.1| - 0.0028 17.5 0.0 0.0043 16.9 0.0 1.3 1 0 0 1 1 1 1 Transketolase, C-terminal domain Img2 PF05046.9 gi|57641469|ref|YP_183947.1| - 0.0048 17.1 0.2 0.0084 16.3 0.1 1.4 1 1 0 1 1 1 1 Mitochondrial large subunit ribosomal protein (Img2) DUF4479 PF14794.1 gi|57641469|ref|YP_183947.1| - 0.024 14.1 0.1 0.044 13.3 0.0 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4479) DUF2179 PF10035.4 gi|57641469|ref|YP_183947.1| - 0.067 12.8 0.2 0.12 12.0 0.1 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2179) Ribosomal_L29 PF00831.18 gi|57641470|ref|YP_183948.1| - 5.5e-19 67.5 2.8 6.4e-19 67.3 1.9 1.1 1 0 0 1 1 1 1 Ribosomal L29 protein DUF1192 PF06698.6 gi|57641470|ref|YP_183948.1| - 0.069 12.9 0.5 0.069 12.9 0.4 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1192) Med9 PF07544.8 gi|57641470|ref|YP_183948.1| - 0.078 12.7 1.4 0.18 11.5 0.3 1.9 1 1 1 2 2 2 0 RNA polymerase II transcription mediator complex subunit 9 DUF4094 PF13334.1 gi|57641470|ref|YP_183948.1| - 0.1 13.0 0.1 0.17 12.2 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4094) Osmo_CC PF08946.5 gi|57641470|ref|YP_183948.1| - 1.2 9.2 5.6 0.68 10.0 0.4 2.2 2 0 0 2 2 2 0 Osmosensory transporter coiled coil Ribosomal_S3_C PF00189.15 gi|57641471|ref|YP_183949.1| - 1.9e-19 69.6 0.3 3.5e-19 68.8 0.2 1.4 1 0 0 1 1 1 1 Ribosomal protein S3, C-terminal domain KH_2 PF07650.12 gi|57641471|ref|YP_183949.1| - 3.2e-16 58.6 0.4 9.8e-16 57.0 0.1 1.9 2 0 0 2 2 2 1 KH domain KH_1 PF00013.24 gi|57641471|ref|YP_183949.1| - 0.0018 17.9 2.1 0.0025 17.4 0.1 2.2 2 0 0 2 2 2 1 KH domain KH_3 PF13014.1 gi|57641471|ref|YP_183949.1| - 0.0051 16.4 3.2 0.034 13.7 0.8 2.6 2 0 0 2 2 2 1 KH domain Ribosomal_L22 PF00237.14 gi|57641472|ref|YP_183950.1| - 1.4e-36 124.5 0.0 1.8e-36 124.2 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L22p/L17e Ribosomal_S19 PF00203.16 gi|57641473|ref|YP_183951.1| - 5e-32 109.3 0.9 7.2e-32 108.8 0.6 1.3 1 0 0 1 1 1 1 Ribosomal protein S19 bZIP_Maf PF03131.12 gi|57641473|ref|YP_183951.1| - 0.0037 17.5 0.4 0.0058 16.8 0.3 1.3 1 0 0 1 1 1 1 bZIP Maf transcription factor Sas10 PF09368.5 gi|57641473|ref|YP_183951.1| - 0.063 13.4 0.5 0.15 12.2 0.1 1.8 2 0 0 2 2 2 0 Sas10 C-terminal domain Ribosomal_L39 PF00832.15 gi|57641473|ref|YP_183951.1| - 0.081 12.4 0.6 0.16 11.4 0.4 1.5 1 0 0 1 1 1 0 Ribosomal L39 protein Ribosomal_L2_C PF03947.13 gi|57641474|ref|YP_183952.1| - 1.9e-43 147.3 0.3 2.9e-43 146.7 0.2 1.3 1 0 0 1 1 1 1 Ribosomal Proteins L2, C-terminal domain Ribosomal_L2 PF00181.18 gi|57641474|ref|YP_183952.1| - 1.1e-18 66.9 0.0 2.7e-18 65.7 0.0 1.7 1 0 0 1 1 1 1 Ribosomal Proteins L2, RNA binding domain Ribosomal_L23 PF00276.15 gi|57641475|ref|YP_183953.1| - 7.4e-21 73.8 4.5 1.2e-20 73.2 3.1 1.3 1 1 0 1 1 1 1 Ribosomal protein L23 TusA PF01206.12 gi|57641475|ref|YP_183953.1| - 0.0051 16.3 0.2 0.0063 16.0 0.1 1.2 1 0 0 1 1 1 1 Sulfurtransferase TusA 7TMR-HDED PF07697.6 gi|57641475|ref|YP_183953.1| - 0.0066 16.1 0.9 0.0077 15.9 0.6 1.1 1 0 0 1 1 1 1 7TM-HD extracellular DUF2959 PF11172.3 gi|57641475|ref|YP_183953.1| - 0.017 14.8 0.2 0.02 14.6 0.2 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2959) THOC7 PF05615.8 gi|57641475|ref|YP_183953.1| - 0.047 13.9 0.1 0.047 13.9 0.1 1.0 1 0 0 1 1 1 0 Tho complex subunit 7 Pox_polyA_pol_N PF12630.2 gi|57641475|ref|YP_183953.1| - 0.1 12.7 0.5 0.19 11.8 0.3 1.5 1 1 1 2 2 2 0 Poxvirus poly(A) polymerase N-terminal domain DUF2551 PF10826.3 gi|57641475|ref|YP_183953.1| - 0.13 12.1 0.2 0.24 11.2 0.1 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF2551) Ribosomal_L4 PF00573.17 gi|57641476|ref|YP_183954.1| - 2e-45 154.5 0.5 2.3e-45 154.3 0.3 1.0 1 0 0 1 1 1 1 Ribosomal protein L4/L1 family DUF2149 PF09919.4 gi|57641476|ref|YP_183954.1| - 0.045 13.8 0.1 0.091 12.8 0.1 1.6 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2149) Ribosomal_L3 PF00297.17 gi|57641477|ref|YP_183955.1| - 1.4e-70 237.6 0.2 1.7e-70 237.4 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L3 Methyltrn_RNA_3 PF02598.12 gi|57641478|ref|YP_183956.1| - 4.8e-63 213.2 0.0 7.9e-63 212.5 0.0 1.3 1 1 0 1 1 1 1 Putative RNA methyltransferase SpoU_methylase PF00588.14 gi|57641478|ref|YP_183956.1| - 2.7e-06 27.3 0.0 0.011 15.5 0.0 2.2 2 0 0 2 2 2 2 SpoU rRNA Methylase family Arch_ATPase PF01637.13 gi|57641479|ref|YP_183957.1| - 1.1e-39 136.5 1.5 3.3e-39 134.9 1.1 1.8 1 1 0 1 1 1 1 Archaeal ATPase DUF234 PF03008.9 gi|57641479|ref|YP_183957.1| - 3.1e-33 113.8 1.8 5.5e-33 113.0 0.2 2.3 3 0 0 3 3 3 1 Archaea bacterial proteins of unknown function AAA_14 PF13173.1 gi|57641479|ref|YP_183957.1| - 1.5e-09 37.8 0.0 3.3e-09 36.7 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|57641479|ref|YP_183957.1| - 2.6e-09 37.3 0.0 7.2e-09 35.8 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|57641479|ref|YP_183957.1| - 2.8e-07 30.7 0.1 2e-05 24.6 0.0 2.9 1 1 0 1 1 1 1 AAA ATPase domain Miro PF08477.8 gi|57641479|ref|YP_183957.1| - 0.057 13.9 0.0 0.17 12.3 0.0 1.8 2 0 0 2 2 2 0 Miro-like protein HTH_45 PF14947.1 gi|57641479|ref|YP_183957.1| - 0.099 12.4 0.1 0.26 11.1 0.1 1.7 1 0 0 1 1 1 0 Winged helix-turn-helix DNA_ligase_A_M PF01068.16 gi|57641480|ref|YP_183958.1| - 2.1e-24 86.0 0.0 3.1e-24 85.4 0.0 1.3 1 0 0 1 1 1 1 ATP dependent DNA ligase domain RNA_ligase PF09414.5 gi|57641480|ref|YP_183958.1| - 6.1e-05 22.8 0.2 0.0012 18.6 0.1 2.2 1 1 0 1 1 1 1 RNA ligase Ribosomal_L16 PF00252.13 gi|57641481|ref|YP_183959.1| - 1.4e-26 92.8 0.2 1.8e-26 92.4 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein L16p/L10e DUF896 PF05979.7 gi|57641481|ref|YP_183959.1| - 0.045 13.3 0.1 0.48 10.0 0.0 2.3 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF896) MFS_1 PF07690.11 gi|57641482|ref|YP_183960.1| - 3.3e-17 62.2 41.3 3.3e-17 62.2 28.6 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|57641482|ref|YP_183960.1| - 0.0021 16.7 13.4 0.0021 16.7 9.3 2.8 1 1 1 2 2 2 1 Sugar (and other) transporter Aminotran_5 PF00266.14 gi|57641483|ref|YP_183961.1| - 7.7e-41 140.0 0.0 9.1e-41 139.8 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V Pyridoxal_deC PF00282.14 gi|57641483|ref|YP_183961.1| - 0.15 10.4 0.0 0.24 9.7 0.0 1.3 1 0 0 1 1 1 0 Pyridoxal-dependent decarboxylase conserved domain T2SE PF00437.15 gi|57641484|ref|YP_183962.1| - 9.8e-13 47.6 0.2 1.4e-12 47.1 0.1 1.1 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_14 PF13173.1 gi|57641484|ref|YP_183962.1| - 1.1e-05 25.3 0.1 2.1e-05 24.4 0.1 1.5 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|57641484|ref|YP_183962.1| - 5.2e-05 23.3 0.0 8.5e-05 22.6 0.0 1.3 1 1 0 1 1 1 1 AAA ATPase domain AAA_5 PF07728.9 gi|57641484|ref|YP_183962.1| - 0.0025 17.5 0.0 0.0038 16.9 0.0 1.3 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) CbiA PF01656.18 gi|57641484|ref|YP_183962.1| - 0.0036 16.7 0.4 0.0099 15.2 0.3 1.6 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Glyco_trans_4_2 PF13477.1 gi|57641484|ref|YP_183962.1| - 0.0038 17.0 0.1 0.005 16.6 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like AAA_25 PF13481.1 gi|57641484|ref|YP_183962.1| - 0.0048 16.3 0.3 0.41 10.0 0.2 2.2 1 1 0 1 1 1 1 AAA domain CPT PF07931.7 gi|57641484|ref|YP_183962.1| - 0.0084 15.7 0.0 0.012 15.1 0.0 1.3 1 0 0 1 1 1 1 Chloramphenicol phosphotransferase-like protein Kinase-PPPase PF03618.9 gi|57641484|ref|YP_183962.1| - 0.011 15.1 1.4 0.25 10.8 0.1 2.1 1 1 1 2 2 2 0 Kinase/pyrophosphorylase MobB PF03205.9 gi|57641484|ref|YP_183962.1| - 0.013 15.1 0.0 0.025 14.2 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B TrwB_AAD_bind PF10412.4 gi|57641484|ref|YP_183962.1| - 0.014 14.0 0.0 0.018 13.6 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_18 PF13238.1 gi|57641484|ref|YP_183962.1| - 0.02 15.1 0.2 0.053 13.8 0.1 1.8 1 1 0 1 1 1 0 AAA domain cobW PF02492.14 gi|57641484|ref|YP_183962.1| - 0.023 14.1 0.0 0.074 12.4 0.0 1.9 1 1 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_22 PF13401.1 gi|57641484|ref|YP_183962.1| - 0.053 13.6 0.1 0.28 11.3 0.1 2.0 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|57641484|ref|YP_183962.1| - 0.081 12.4 0.0 0.19 11.3 0.0 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain Arch_ATPase PF01637.13 gi|57641484|ref|YP_183962.1| - 0.082 12.5 0.0 0.11 12.1 0.0 1.3 1 0 0 1 1 1 0 Archaeal ATPase AAA_17 PF13207.1 gi|57641484|ref|YP_183962.1| - 0.097 13.4 0.8 0.22 12.3 0.5 1.8 1 1 0 1 1 1 0 AAA domain FtsK_SpoIIIE PF01580.13 gi|57641484|ref|YP_183962.1| - 0.1 12.0 0.0 0.18 11.2 0.0 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family SRPRB PF09439.5 gi|57641484|ref|YP_183962.1| - 0.11 11.6 0.0 0.18 10.9 0.0 1.3 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit Peripla_BP_6 PF13458.1 gi|57641484|ref|YP_183962.1| - 0.14 11.4 0.0 0.3 10.3 0.0 1.5 1 1 0 1 1 1 0 Periplasmic binding protein SMC_N PF02463.14 gi|57641484|ref|YP_183962.1| - 0.17 11.0 0.0 3.2 6.9 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain tRNA-synt_2 PF00152.15 gi|57641485|ref|YP_183963.1| - 3.8e-47 160.7 0.4 2.5e-24 85.6 0.0 2.0 1 1 1 2 2 2 2 tRNA synthetases class II (D, K and N) GLTP PF08718.6 gi|57641485|ref|YP_183963.1| - 0.13 12.2 0.0 0.21 11.5 0.0 1.3 1 0 0 1 1 1 0 Glycolipid transfer protein (GLTP) ATP_bind_3 PF01171.15 gi|57641486|ref|YP_183964.1| - 3.2e-08 33.2 0.0 6.3e-08 32.3 0.0 1.5 1 0 0 1 1 1 1 PP-loop family QueC PF06508.8 gi|57641486|ref|YP_183964.1| - 2.4e-07 30.2 0.0 4.1e-07 29.4 0.0 1.4 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC ATP_bind_4 PF01902.12 gi|57641486|ref|YP_183964.1| - 1.2e-06 28.0 0.1 2e-06 27.3 0.1 1.3 1 0 0 1 1 1 1 ATP-binding region PAPS_reduct PF01507.14 gi|57641486|ref|YP_183964.1| - 4.7e-06 26.5 0.0 6.9e-06 25.9 0.0 1.2 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family tRNA_Me_trans PF03054.11 gi|57641486|ref|YP_183964.1| - 1.9e-05 23.4 0.0 3.5e-05 22.5 0.0 1.3 1 1 0 1 1 1 1 tRNA methyl transferase NAD_synthase PF02540.12 gi|57641486|ref|YP_183964.1| - 5.8e-05 22.1 0.0 8.2e-05 21.6 0.0 1.2 1 0 0 1 1 1 1 NAD synthase ThiI PF02568.9 gi|57641486|ref|YP_183964.1| - 0.00073 19.0 0.1 0.0014 18.1 0.0 1.4 1 1 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) Asn_synthase PF00733.16 gi|57641486|ref|YP_183964.1| - 0.0015 18.0 0.0 0.0023 17.4 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase Arginosuc_synth PF00764.14 gi|57641486|ref|YP_183964.1| - 0.0035 16.4 0.0 0.0047 16.0 0.0 1.1 1 0 0 1 1 1 1 Arginosuccinate synthase DUF2576 PF10845.3 gi|57641486|ref|YP_183964.1| - 0.094 11.8 0.1 0.19 10.8 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2576) PTPS_related PF10131.4 gi|57641487|ref|YP_183965.1| - 2.2e-161 538.1 14.8 2.8e-161 537.7 10.3 1.1 1 0 0 1 1 1 1 6-pyruvoyl-tetrahydropterin synthase related domain; membrane protein DUF3367 PF11847.3 gi|57641487|ref|YP_183965.1| - 0.002 16.1 9.6 0.0034 15.4 6.6 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF3367) Glyco_tranf_2_3 PF13641.1 gi|57641489|ref|YP_183967.1| - 8.4e-34 117.3 0.0 1.4e-33 116.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|57641489|ref|YP_183967.1| - 9.9e-26 90.6 4.1 9.9e-26 90.6 2.8 1.9 2 1 0 2 2 2 1 Glycosyl transferase family group 2 Glycos_transf_2 PF00535.21 gi|57641489|ref|YP_183967.1| - 1.4e-21 76.8 0.1 2.2e-21 76.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_transf_21 PF13506.1 gi|57641489|ref|YP_183967.1| - 2.5e-09 36.6 0.0 3.7e-09 36.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_4 PF13704.1 gi|57641489|ref|YP_183967.1| - 7.6e-06 26.1 0.0 1.4e-05 25.2 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_2 PF10111.4 gi|57641489|ref|YP_183967.1| - 0.00088 18.4 0.0 0.0014 17.8 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase like family 2 DUF2721 PF11026.3 gi|57641490|ref|YP_183968.1| - 0.4 10.3 12.8 0.023 14.3 5.1 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2721) DUF2306 PF10067.4 gi|57641490|ref|YP_183968.1| - 1.4 9.1 6.4 4.5 7.4 4.3 1.9 1 1 1 2 2 2 0 Predicted membrane protein (DUF2306) OPT PF03169.10 gi|57641490|ref|YP_183968.1| - 3.2 6.0 10.1 3.1 6.0 7.0 1.3 1 1 0 1 1 1 0 OPT oligopeptide transporter protein 2TM PF13239.1 gi|57641490|ref|YP_183968.1| - 5.6 7.1 8.5 3.9 7.6 0.2 2.5 1 1 1 2 2 2 0 2TM domain ATP_bind_3 PF01171.15 gi|57641491|ref|YP_183969.1| - 7.1e-14 51.7 0.0 1.2e-13 50.9 0.0 1.3 1 0 0 1 1 1 1 PP-loop family PAPS_reduct PF01507.14 gi|57641491|ref|YP_183969.1| - 2.2e-08 34.1 0.0 3.6e-08 33.4 0.0 1.3 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family ThiI PF02568.9 gi|57641491|ref|YP_183969.1| - 1.4e-07 31.2 0.0 2.2e-07 30.5 0.0 1.3 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) QueC PF06508.8 gi|57641491|ref|YP_183969.1| - 7.8e-07 28.5 0.1 1.6e-05 24.3 0.0 2.2 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.11 gi|57641491|ref|YP_183969.1| - 3.2e-06 25.9 0.1 1.8e-05 23.4 0.1 2.0 1 1 0 1 1 1 1 tRNA methyl transferase Asn_synthase PF00733.16 gi|57641491|ref|YP_183969.1| - 0.0006 19.3 0.0 0.0011 18.5 0.0 1.3 1 0 0 1 1 1 1 Asparagine synthase RecR PF02132.10 gi|57641491|ref|YP_183969.1| - 0.0016 17.8 0.7 0.0016 17.8 0.5 2.5 3 0 0 3 3 3 1 RecR protein Rhodanese PF00581.15 gi|57641491|ref|YP_183969.1| - 0.0085 16.4 0.0 0.017 15.4 0.0 1.5 1 0 0 1 1 1 1 Rhodanese-like domain NAD_synthase PF02540.12 gi|57641491|ref|YP_183969.1| - 0.011 14.6 0.0 0.02 13.8 0.0 1.3 1 0 0 1 1 1 0 NAD synthase zf-C2H2_3 PF13878.1 gi|57641491|ref|YP_183969.1| - 0.25 10.9 1.1 13 5.4 0.1 2.7 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO Pyr_redox_2 PF07992.9 gi|57641492|ref|YP_183970.1| - 7.3e-14 52.1 0.1 3.7e-07 30.2 0.1 3.2 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|57641492|ref|YP_183970.1| - 3.9e-10 39.1 0.2 9e-08 31.3 0.2 2.3 1 1 0 1 1 1 1 FAD dependent oxidoreductase GIDA PF01134.17 gi|57641492|ref|YP_183970.1| - 2.2e-09 36.6 0.1 0.00023 20.1 0.0 2.2 2 0 0 2 2 2 2 Glucose inhibited division protein A HI0933_like PF03486.9 gi|57641492|ref|YP_183970.1| - 4e-07 28.8 0.0 1.5e-06 27.0 0.0 1.8 2 0 0 2 2 2 1 HI0933-like protein FAD_binding_2 PF00890.19 gi|57641492|ref|YP_183970.1| - 4.9e-07 28.9 0.8 4.1e-06 25.8 0.1 2.3 2 0 0 2 2 2 1 FAD binding domain NAD_binding_8 PF13450.1 gi|57641492|ref|YP_183970.1| - 6.6e-07 29.2 0.0 6.6e-06 26.0 0.1 2.7 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.12 gi|57641492|ref|YP_183970.1| - 1.5e-06 27.4 0.9 2.2e-06 26.9 0.1 1.6 2 0 0 2 2 2 1 Thi4 family Lycopene_cycl PF05834.7 gi|57641492|ref|YP_183970.1| - 5.4e-05 22.2 0.1 8.6e-05 21.6 0.1 1.2 1 0 0 1 1 1 1 Lycopene cyclase protein FAD_binding_3 PF01494.14 gi|57641492|ref|YP_183970.1| - 0.00061 18.9 0.0 0.0024 16.9 0.0 2.0 2 0 0 2 2 2 1 FAD binding domain Pyr_redox_3 PF13738.1 gi|57641492|ref|YP_183970.1| - 0.00072 19.6 0.1 0.0033 17.5 0.1 2.0 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.1 gi|57641492|ref|YP_183970.1| - 0.0049 16.6 0.0 0.0097 15.6 0.0 1.5 1 0 0 1 1 1 1 FAD-NAD(P)-binding Pyr_redox PF00070.22 gi|57641492|ref|YP_183970.1| - 0.023 15.0 0.1 9.5 6.7 0.0 3.0 3 0 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.2 gi|57641492|ref|YP_183970.1| - 0.023 13.7 0.1 0.034 13.2 0.1 1.2 1 0 0 1 1 1 0 FAD dependent oxidoreductase K_oxygenase PF13434.1 gi|57641492|ref|YP_183970.1| - 0.069 12.0 0.0 0.11 11.3 0.0 1.3 1 0 0 1 1 1 0 L-lysine 6-monooxygenase (NADPH-requiring) CBS PF00571.23 gi|57641493|ref|YP_183971.1| - 3.6e-27 93.8 3.1 3.7e-15 55.4 1.3 2.3 2 0 0 2 2 2 2 CBS domain Na_H_Exchanger PF00999.16 gi|57641494|ref|YP_183972.1| - 7.2e-74 248.5 49.8 8.1e-74 248.4 34.5 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family Na_H_Exchanger PF00999.16 gi|57641495|ref|YP_183973.1| - 1.7e-76 257.2 44.3 2e-76 256.9 30.7 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family MarC PF01914.12 gi|57641496|ref|YP_183974.1| - 2.9e-48 163.6 24.9 3.3e-48 163.5 17.3 1.0 1 0 0 1 1 1 1 MarC family integral membrane protein HemY_N PF07219.8 gi|57641496|ref|YP_183974.1| - 0.72 9.4 4.2 1.7 8.2 2.9 1.7 1 0 0 1 1 1 0 HemY protein N-terminus DUF2417 PF10329.4 gi|57641496|ref|YP_183974.1| - 1.8 7.9 10.5 0.081 12.3 3.4 1.6 2 0 0 2 2 2 0 Region of unknown function (DUF2417) tRNA-synt_His PF13393.1 gi|57641497|ref|YP_183975.1| - 2.9e-68 230.2 0.0 3.6e-68 229.9 0.0 1.1 1 0 0 1 1 1 1 Histidyl-tRNA synthetase tRNA-synt_2b PF00587.20 gi|57641497|ref|YP_183975.1| - 7.9e-24 84.1 0.1 1.3e-23 83.4 0.1 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|57641497|ref|YP_183975.1| - 1.5e-19 69.6 2.6 1.6e-19 69.6 0.7 1.9 2 0 0 2 2 2 1 Anticodon binding domain tRNA-synt_2 PF00152.15 gi|57641497|ref|YP_183975.1| - 5.2e-06 25.4 2.6 0.006 15.3 0.5 3.0 2 1 0 2 2 2 2 tRNA synthetases class II (D, K and N) tRNA-synt_2d PF01409.15 gi|57641497|ref|YP_183975.1| - 0.042 13.0 0.1 0.13 11.4 0.0 1.8 2 1 0 2 2 2 0 tRNA synthetases class II core domain (F) AP_endonuc_2 PF01261.19 gi|57641497|ref|YP_183975.1| - 0.06 12.6 0.0 0.21 10.8 0.0 1.8 2 0 0 2 2 2 0 Xylose isomerase-like TIM barrel PLDc_2 PF13091.1 gi|57641498|ref|YP_183976.1| - 2e-22 79.2 0.2 5e-22 77.9 0.1 1.6 1 0 0 1 1 1 1 PLD-like domain PLDc PF00614.17 gi|57641498|ref|YP_183976.1| - 1.2e-07 31.2 0.1 2.2e-07 30.4 0.1 1.4 1 0 0 1 1 1 1 Phospholipase D Active site motif PP_kinase_C PF13090.1 gi|57641498|ref|YP_183976.1| - 5.3e-05 21.9 0.2 0.00026 19.7 0.0 2.0 2 1 0 2 2 2 1 Polyphosphate kinase C-terminal domain HrpB7 PF09486.5 gi|57641498|ref|YP_183976.1| - 0.0001 22.3 1.5 0.048 13.5 0.1 2.4 2 0 0 2 2 2 2 Bacterial type III secretion protein (HrpB7) PmbA_TldD PF01523.11 gi|57641498|ref|YP_183976.1| - 0.0012 18.1 0.3 0.0026 17.0 0.0 1.6 2 1 0 2 2 2 1 Putative modulator of DNA gyrase Filament PF00038.16 gi|57641498|ref|YP_183976.1| - 0.0016 17.9 5.1 0.049 13.0 1.2 2.2 1 1 1 2 2 2 1 Intermediate filament protein Spc7 PF08317.6 gi|57641498|ref|YP_183976.1| - 0.0023 16.6 5.1 0.0034 16.1 3.5 1.1 1 0 0 1 1 1 1 Spc7 kinetochore protein WEMBL PF05701.6 gi|57641498|ref|YP_183976.1| - 0.0046 15.4 10.2 0.0089 14.5 7.1 1.4 1 1 0 1 1 1 1 Weak chloroplast movement under blue light CENP-F_leu_zip PF10473.4 gi|57641498|ref|YP_183976.1| - 0.0046 16.8 8.7 0.4 10.5 0.3 2.2 2 0 0 2 2 2 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF3584 PF12128.3 gi|57641498|ref|YP_183976.1| - 0.01 13.2 1.9 0.014 12.7 1.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) TPR_MLP1_2 PF07926.7 gi|57641498|ref|YP_183976.1| - 0.011 15.5 9.7 0.18 11.5 6.4 2.2 1 1 1 2 2 2 0 TPR/MLP1/MLP2-like protein DUF745 PF05335.8 gi|57641498|ref|YP_183976.1| - 0.028 13.9 2.2 0.045 13.2 1.6 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF745) HR1 PF02185.11 gi|57641498|ref|YP_183976.1| - 0.029 14.1 7.6 0.081 12.6 0.3 2.5 2 0 0 2 2 2 0 Hr1 repeat DUF1043 PF06295.7 gi|57641498|ref|YP_183976.1| - 0.048 13.2 0.8 0.078 12.6 0.3 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF1043) Regulator_TrmB PF11495.3 gi|57641498|ref|YP_183976.1| - 0.058 12.3 0.5 0.2 10.5 0.1 2.0 1 1 1 2 2 2 0 Archaeal transcriptional regulator TrmB Pox_A_type_inc PF04508.7 gi|57641498|ref|YP_183976.1| - 0.063 13.0 1.2 0.063 13.0 0.8 4.0 4 1 0 4 4 2 0 Viral A-type inclusion protein repeat MscS_porin PF12795.2 gi|57641498|ref|YP_183976.1| - 0.089 12.0 3.3 0.38 10.0 2.3 2.0 1 1 0 1 1 1 0 Mechanosensitive ion channel porin domain DASH_Dad2 PF08654.5 gi|57641498|ref|YP_183976.1| - 0.11 12.4 3.1 6.2 6.8 0.1 2.5 2 0 0 2 2 2 0 DASH complex subunit Dad2 DUF342 PF03961.8 gi|57641498|ref|YP_183976.1| - 0.14 10.5 2.9 0.29 9.5 2.0 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF342) PspA_IM30 PF04012.7 gi|57641498|ref|YP_183976.1| - 0.15 11.4 1.6 6.5 6.0 0.4 2.4 2 0 0 2 2 2 0 PspA/IM30 family GAS PF13851.1 gi|57641498|ref|YP_183976.1| - 0.19 10.9 6.4 0.91 8.6 4.3 1.9 1 1 1 2 2 2 0 Growth-arrest specific micro-tubule binding DUF4201 PF13870.1 gi|57641498|ref|YP_183976.1| - 0.19 11.1 8.9 2.7 7.4 0.3 2.1 1 1 0 2 2 2 0 Domain of unknown function (DUF4201) Reo_sigmaC PF04582.7 gi|57641498|ref|YP_183976.1| - 0.7 9.0 6.4 1.2 8.2 3.0 1.9 1 1 1 2 2 2 0 Reovirus sigma C capsid protein Prefoldin_2 PF01920.15 gi|57641498|ref|YP_183976.1| - 0.77 9.5 7.5 5.5 6.7 2.2 2.4 2 0 0 2 2 2 0 Prefoldin subunit Prominin PF05478.6 gi|57641498|ref|YP_183976.1| - 0.84 7.0 9.2 2.1 5.7 6.4 1.6 1 1 0 1 1 1 0 Prominin Mnd1 PF03962.10 gi|57641498|ref|YP_183976.1| - 0.86 9.2 5.8 1.3 8.6 1.1 2.2 1 1 0 2 2 2 0 Mnd1 family Uds1 PF15456.1 gi|57641498|ref|YP_183976.1| - 1.2 9.1 8.0 4.7 7.2 5.1 2.1 1 1 1 2 2 2 0 Up-regulated During Septation DUF972 PF06156.8 gi|57641500|ref|YP_183978.1| - 3.6e-06 27.2 4.0 4.5e-06 26.9 2.8 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF972) Med9 PF07544.8 gi|57641500|ref|YP_183978.1| - 3e-05 23.6 7.5 7.7e-05 22.3 2.6 2.2 1 1 1 2 2 2 1 RNA polymerase II transcription mediator complex subunit 9 COG6 PF06419.6 gi|57641500|ref|YP_183978.1| - 0.00015 20.0 1.2 0.00018 19.8 0.8 1.0 1 0 0 1 1 1 1 Conserved oligomeric complex COG6 Mod_r PF07200.8 gi|57641500|ref|YP_183978.1| - 0.00091 19.1 1.6 0.0012 18.7 1.1 1.2 1 0 0 1 1 1 1 Modifier of rudimentary (Mod(r)) protein AAA_28 PF13521.1 gi|57641500|ref|YP_183978.1| - 0.0035 17.3 0.2 0.0042 17.0 0.1 1.1 1 0 0 1 1 1 1 AAA domain CbiG_C PF01890.11 gi|57641500|ref|YP_183978.1| - 0.01 16.0 0.1 0.016 15.4 0.0 1.6 1 1 0 1 1 1 0 Cobalamin synthesis G C-terminus GvpK PF05121.7 gi|57641500|ref|YP_183978.1| - 0.025 14.3 2.1 0.025 14.3 1.5 1.6 1 1 0 1 1 1 0 Gas vesicle protein K DUF2051 PF09738.4 gi|57641500|ref|YP_183978.1| - 0.025 13.8 4.9 0.027 13.7 3.4 1.1 1 0 0 1 1 1 0 Double stranded RNA binding protein (DUF2051) DUF904 PF06005.7 gi|57641500|ref|YP_183978.1| - 0.031 14.5 8.9 0.04 14.2 6.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF904) Lzipper-MIP1 PF14389.1 gi|57641500|ref|YP_183978.1| - 0.042 13.9 4.1 0.042 13.9 2.8 1.7 1 1 0 1 1 1 0 Leucine-zipper of ternary complex factor MIP1 TBPIP PF07106.8 gi|57641500|ref|YP_183978.1| - 0.051 13.1 2.9 0.064 12.8 2.0 1.3 1 0 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) AAA_13 PF13166.1 gi|57641500|ref|YP_183978.1| - 0.055 11.9 1.1 0.058 11.8 0.8 1.0 1 0 0 1 1 1 0 AAA domain DUF3251 PF11622.3 gi|57641500|ref|YP_183978.1| - 0.064 12.6 0.3 0.08 12.3 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3251) Mnd1 PF03962.10 gi|57641500|ref|YP_183978.1| - 0.079 12.6 3.3 0.096 12.3 2.3 1.1 1 0 0 1 1 1 0 Mnd1 family V_ATPase_I PF01496.14 gi|57641500|ref|YP_183978.1| - 0.092 10.5 2.3 0.088 10.6 1.6 1.0 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family ATG16 PF08614.6 gi|57641500|ref|YP_183978.1| - 0.11 12.2 8.3 0.14 11.9 5.8 1.1 1 0 0 1 1 1 0 Autophagy protein 16 (ATG16) PEP-utilisers_N PF05524.8 gi|57641500|ref|YP_183978.1| - 0.12 12.2 0.7 0.14 11.9 0.5 1.2 1 0 0 1 1 1 0 PEP-utilising enzyme, N-terminal DUF948 PF06103.6 gi|57641500|ref|YP_183978.1| - 0.13 12.0 0.4 0.17 11.7 0.3 1.3 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF948) zf-C4H2 PF10146.4 gi|57641500|ref|YP_183978.1| - 0.14 12.1 4.0 0.15 12.0 2.7 1.0 1 0 0 1 1 1 0 Zinc finger-containing protein Ax_dynein_light PF10211.4 gi|57641500|ref|YP_183978.1| - 0.17 11.6 6.1 0.21 11.4 4.3 1.1 1 0 0 1 1 1 0 Axonemal dynein light chain MutS_IV PF05190.13 gi|57641500|ref|YP_183978.1| - 0.18 12.0 4.1 0.67 10.1 3.2 1.6 1 1 0 1 1 1 0 MutS family domain IV APG6 PF04111.7 gi|57641500|ref|YP_183978.1| - 0.19 10.7 3.9 0.22 10.5 2.7 1.1 1 0 0 1 1 1 0 Autophagy protein Apg6 ORF6C PF10552.4 gi|57641500|ref|YP_183978.1| - 0.19 11.4 3.7 0.19 11.4 1.5 1.6 1 1 1 2 2 2 0 ORF6C domain Spc24 PF08286.6 gi|57641500|ref|YP_183978.1| - 0.24 11.1 4.1 0.65 9.7 2.8 1.7 1 1 0 1 1 1 0 Spc24 subunit of Ndc80 DUF4200 PF13863.1 gi|57641500|ref|YP_183978.1| - 0.24 11.3 8.6 0.097 12.6 2.1 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4200) DUF2312 PF10073.4 gi|57641500|ref|YP_183978.1| - 0.26 10.6 6.1 0.51 9.7 4.2 1.7 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2312) Kinetocho_Slk19 PF12709.2 gi|57641500|ref|YP_183978.1| - 0.26 11.4 7.8 0.35 10.9 1.6 2.0 1 1 1 2 2 2 0 Central kinetochore-associated bZIP_2 PF07716.10 gi|57641500|ref|YP_183978.1| - 0.27 11.0 7.7 3.1 7.6 0.1 2.3 1 1 1 2 2 2 0 Basic region leucine zipper IncA PF04156.9 gi|57641500|ref|YP_183978.1| - 0.27 10.8 6.9 0.31 10.6 4.8 1.1 1 0 0 1 1 1 0 IncA protein DUF342 PF03961.8 gi|57641500|ref|YP_183978.1| - 0.27 9.5 3.4 0.27 9.6 2.3 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF342) USP8_interact PF08941.5 gi|57641500|ref|YP_183978.1| - 0.29 10.4 1.9 0.35 10.1 1.3 1.1 1 0 0 1 1 1 0 USP8 interacting DUF16 PF01519.11 gi|57641500|ref|YP_183978.1| - 0.3 11.3 2.2 0.36 11.0 1.5 1.2 1 0 0 1 1 1 0 Protein of unknown function DUF16 BLOC1_2 PF10046.4 gi|57641500|ref|YP_183978.1| - 0.32 11.1 4.2 0.37 10.9 0.4 2.1 1 1 1 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 ACCA PF03255.9 gi|57641500|ref|YP_183978.1| - 0.36 10.3 1.8 0.46 10.0 1.3 1.2 1 0 0 1 1 1 0 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit LRS4 PF10422.4 gi|57641500|ref|YP_183978.1| - 0.45 9.8 2.6 0.54 9.5 1.8 1.1 1 0 0 1 1 1 0 Monopolin complex subunit LRS4 Lge1 PF11488.3 gi|57641500|ref|YP_183978.1| - 0.54 10.4 4.5 0.72 10.0 3.1 1.2 1 0 0 1 1 1 0 Transcriptional regulatory protein LGE1 DivIC PF04977.10 gi|57641500|ref|YP_183978.1| - 0.69 9.4 6.5 5.2 6.6 4.1 2.0 1 1 0 1 1 1 0 Septum formation initiator Myosin_HC-like PF07058.6 gi|57641500|ref|YP_183978.1| - 0.77 8.7 5.9 0.23 10.5 1.0 1.9 1 1 1 2 2 2 0 Myosin II heavy chain-like DUF1447 PF07288.6 gi|57641500|ref|YP_183978.1| - 0.86 9.4 3.8 2.8 7.7 0.1 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1447) Pox_A_type_inc PF04508.7 gi|57641500|ref|YP_183978.1| - 0.87 9.5 5.0 3.4 7.6 3.5 2.1 1 0 0 1 1 1 0 Viral A-type inclusion protein repeat TSC22 PF01166.13 gi|57641500|ref|YP_183978.1| - 1.2 9.1 8.9 2.1 8.3 4.4 2.1 1 1 1 2 2 2 0 TSC-22/dip/bun family FlaC_arch PF05377.6 gi|57641500|ref|YP_183978.1| - 1.6 8.6 7.5 1.2 9.0 3.6 1.9 1 1 1 2 2 2 0 Flagella accessory protein C (FlaC) bZIP_1 PF00170.16 gi|57641500|ref|YP_183978.1| - 1.6 8.7 10.0 4.6 7.2 1.1 2.2 1 1 1 2 2 2 0 bZIP transcription factor SlyX PF04102.7 gi|57641500|ref|YP_183978.1| - 1.8 8.9 4.6 5.1 7.5 3.1 1.7 1 1 1 2 2 2 0 SlyX Latarcin PF10279.4 gi|57641500|ref|YP_183978.1| - 6 7.1 6.3 11 6.2 4.3 1.6 1 1 0 1 1 1 0 Latarcin precursor tRNA-synt_2c PF01411.14 gi|57641502|ref|YP_183980.1| - 6e-156 519.9 0.0 8.3e-156 519.4 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class II (A) tRNA_SAD PF07973.9 gi|57641502|ref|YP_183980.1| - 4e-16 58.6 0.2 1.1e-15 57.2 0.1 1.8 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain DHHA1 PF02272.14 gi|57641502|ref|YP_183980.1| - 1.8e-09 37.1 2.9 4.1e-09 36.0 2.0 1.7 1 0 0 1 1 1 1 DHHA1 domain SSF PF00474.12 gi|57641503|ref|YP_183981.1| - 2.5e-63 214.1 19.7 4e-63 213.4 13.7 1.3 1 0 0 1 1 1 1 Sodium:solute symporter family B12-binding PF02310.14 gi|57641503|ref|YP_183981.1| - 0.013 15.3 0.1 0.03 14.1 0.1 1.5 1 0 0 1 1 1 0 B12 binding domain MttA_Hcf106 PF02416.11 gi|57641503|ref|YP_183981.1| - 0.2 10.8 2.3 0.49 9.5 0.2 2.9 2 0 0 2 2 2 0 mttA/Hcf106 family Fe-ADH PF00465.14 gi|57641504|ref|YP_183982.1| - 1.2e-103 346.6 0.0 1.3e-103 346.4 0.0 1.0 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH_2 PF13685.1 gi|57641504|ref|YP_183982.1| - 4.2e-13 49.1 0.1 3.8e-07 29.6 0.0 2.2 1 1 1 2 2 2 2 Iron-containing alcohol dehydrogenase DUF1967 PF09269.6 gi|57641504|ref|YP_183982.1| - 0.022 14.3 0.2 0.21 11.2 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1967) DUF1052 PF06319.7 gi|57641505|ref|YP_183983.1| - 0.032 13.4 0.0 0.045 13.0 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1052) NIF3 PF01784.13 gi|57641507|ref|YP_183985.1| - 2.8e-58 197.3 0.0 3.3e-58 197.1 0.0 1.0 1 0 0 1 1 1 1 NIF3 (NGG1p interacting factor 3) AP_endonuc_2 PF01261.19 gi|57641507|ref|YP_183985.1| - 0.0078 15.5 0.1 0.012 14.9 0.0 1.5 1 1 0 1 1 1 1 Xylose isomerase-like TIM barrel ThiC PF01964.13 gi|57641507|ref|YP_183985.1| - 0.067 11.6 0.0 0.11 10.9 0.0 1.3 1 0 0 1 1 1 0 ThiC family Arch_ATPase PF01637.13 gi|57641508|ref|YP_183986.1| - 4.1e-27 95.4 5.6 1.1e-26 94.0 3.9 1.7 1 1 0 1 1 1 1 Archaeal ATPase DUF234 PF03008.9 gi|57641508|ref|YP_183986.1| - 2.4e-25 88.5 3.7 2.6e-25 88.4 0.3 2.7 3 0 0 3 3 3 1 Archaea bacterial proteins of unknown function AAA_14 PF13173.1 gi|57641508|ref|YP_183986.1| - 5.3e-11 42.5 0.2 1.5e-10 41.0 0.1 1.8 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|57641508|ref|YP_183986.1| - 3.1e-06 27.3 0.0 7e-06 26.2 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|57641508|ref|YP_183986.1| - 0.0047 16.9 0.4 0.018 15.0 0.1 1.9 1 1 1 2 2 2 1 AAA ATPase domain Radical_SAM PF04055.16 gi|57641509|ref|YP_183987.1| - 8.5e-28 97.6 0.1 4.8e-27 95.1 0.0 2.4 2 1 0 2 2 2 1 Radical SAM superfamily Acetyltransf_1 PF00583.19 gi|57641509|ref|YP_183987.1| - 3e-09 36.7 0.1 8.6e-09 35.3 0.1 1.9 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|57641509|ref|YP_183987.1| - 0.037 14.1 0.9 0.13 12.4 0.6 2.0 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|57641509|ref|YP_183987.1| - 0.15 12.1 0.1 0.34 11.0 0.1 1.6 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain TrkA_C PF02080.16 gi|57641510|ref|YP_183988.1| - 2e-13 49.7 0.0 4e-13 48.7 0.0 1.6 1 0 0 1 1 1 1 TrkA-C domain ABC2_membrane_3 PF12698.2 gi|57641510|ref|YP_183988.1| - 0.49 9.3 5.3 0.63 9.0 3.7 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein NfeD PF01957.13 gi|57641510|ref|YP_183988.1| - 0.99 9.5 5.3 0.21 11.6 0.4 2.0 2 0 0 2 2 2 0 NfeD-like C-terminal, partner-binding DUF308 PF03729.8 gi|57641511|ref|YP_183989.1| - 3.2e-21 75.1 35.6 1.8e-12 47.0 8.4 3.2 1 1 2 3 3 3 3 Short repeat of unknown function (DUF308) DUF3292 PF11696.3 gi|57641511|ref|YP_183989.1| - 0.11 10.4 0.7 0.13 10.1 0.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3292) COPI_assoc PF08507.5 gi|57641511|ref|YP_183989.1| - 0.73 9.5 25.2 0.019 14.6 8.1 2.9 1 1 1 2 2 2 0 COPI associated protein Chitin_synth_2 PF03142.10 gi|57641511|ref|YP_183989.1| - 0.84 7.9 7.5 1.1 7.5 5.2 1.1 1 0 0 1 1 1 0 Chitin synthase DUF872 PF05915.7 gi|57641511|ref|YP_183989.1| - 3.1 7.7 17.0 0.081 12.7 1.7 3.1 2 1 2 4 4 4 0 Eukaryotic protein of unknown function (DUF872) DUF4239 PF14023.1 gi|57641511|ref|YP_183989.1| - 3.3 7.0 8.0 0.72 9.1 2.4 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF4239) NPCBM_assoc PF10633.4 gi|57641512|ref|YP_183990.1| - 4.3e-31 106.7 15.2 4.4e-16 58.6 0.1 5.6 6 0 0 6 6 5 4 NPCBM-associated, NEW3 domain of alpha-galactosidase CarboxypepD_reg PF13620.1 gi|57641512|ref|YP_183990.1| - 2.6e-14 53.0 12.4 2.1e-11 43.6 1.9 4.4 4 0 0 4 4 3 2 Carboxypeptidase regulatory-like domain CARDB PF07705.6 gi|57641512|ref|YP_183990.1| - 3.8e-11 42.9 4.8 0.0003 20.7 0.1 5.0 3 2 1 4 4 4 2 CARDB DUF4480 PF13715.1 gi|57641512|ref|YP_183990.1| - 1.6e-09 37.6 1.2 4.6e-07 29.7 0.1 3.6 3 0 0 3 3 3 1 Domain of unknown function (DUF4480) PEGA PF08308.6 gi|57641512|ref|YP_183990.1| - 7.9e-08 31.9 0.5 1.4e-05 24.7 0.1 4.1 3 1 1 4 4 4 1 PEGA domain FixG_C PF11614.3 gi|57641512|ref|YP_183990.1| - 1.5e-05 25.0 0.8 9 6.4 0.3 5.8 3 3 4 7 7 7 0 IG-like fold at C-terminal of FixG, putative oxidoreductase phage_tail_N PF08400.5 gi|57641512|ref|YP_183990.1| - 2.8e-05 23.8 1.1 0.45 10.2 0.1 3.7 3 1 1 4 4 3 2 Prophage tail fibre N-terminal DUF11 PF01345.13 gi|57641512|ref|YP_183990.1| - 6e-05 23.0 8.4 0.09 12.8 0.0 4.9 5 0 0 5 5 5 2 Domain of unknown function DUF11 A2M_N PF01835.14 gi|57641512|ref|YP_183990.1| - 0.00036 20.7 1.1 2.2 8.5 0.0 5.1 3 3 1 4 4 4 1 MG2 domain DUF4397 PF14344.1 gi|57641512|ref|YP_183990.1| - 0.00049 20.4 5.1 0.42 10.9 0.2 4.1 4 1 0 4 4 4 2 Domain of unknown function (DUF4397) DUF4625 PF15418.1 gi|57641512|ref|YP_183990.1| - 0.0005 20.1 0.0 0.36 10.9 0.0 3.3 3 0 0 3 3 3 1 Domain of unknown function (DUF4625) TRAP_beta PF05753.9 gi|57641512|ref|YP_183990.1| - 0.00058 19.0 1.3 0.35 10.0 0.0 3.6 4 0 0 4 4 4 1 Translocon-associated protein beta (TRAPB) MG1 PF11974.3 gi|57641512|ref|YP_183990.1| - 0.009 16.5 0.1 0.009 16.5 0.1 3.5 4 0 0 4 4 3 1 Alpha-2-macroglobulin MG1 domain Wzt_C PF14524.1 gi|57641512|ref|YP_183990.1| - 0.012 15.2 0.2 2.8 7.6 0.0 4.3 4 1 0 4 4 4 0 Wzt C-terminal domain Peptidase_C25_C PF03785.9 gi|57641512|ref|YP_183990.1| - 0.018 14.8 0.3 0.26 11.1 0.1 2.8 2 0 0 2 2 2 0 Peptidase family C25, C terminal ig-like domain Transglut_N PF00868.15 gi|57641512|ref|YP_183990.1| - 0.029 14.3 0.0 25 4.9 0.0 4.2 4 1 0 4 4 4 0 Transglutaminase family Y_Y_Y PF07495.8 gi|57641512|ref|YP_183990.1| - 0.03 14.0 0.6 14 5.5 0.0 3.7 4 0 0 4 4 3 0 Y_Y_Y domain AfaD PF05775.7 gi|57641512|ref|YP_183990.1| - 0.093 12.7 0.0 1.9 8.5 0.0 2.8 1 1 1 2 2 2 0 Enterobacteria AfaD invasin protein Integrin_alpha2 PF08441.7 gi|57641512|ref|YP_183990.1| - 0.12 11.1 0.1 11 4.7 0.0 2.8 2 1 1 3 3 3 0 Integrin alpha Big_3_4 PF13754.1 gi|57641512|ref|YP_183990.1| - 1.8 8.9 6.0 9.7 6.6 0.1 4.6 3 1 0 3 3 2 0 Bacterial Ig-like domain (group 3) ABC2_membrane_2 PF12679.2 gi|57641513|ref|YP_183991.1| - 1.7e-36 125.5 3.7 2.1e-36 125.2 2.6 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|57641513|ref|YP_183991.1| - 1.6e-15 56.9 15.5 1.6e-15 56.9 10.7 1.5 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|57641513|ref|YP_183991.1| - 1.9e-07 30.4 17.4 1.9e-07 30.4 12.0 2.3 2 1 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|57641513|ref|YP_183991.1| - 0.00043 19.5 20.0 0.00043 19.5 13.8 1.9 2 1 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_5 PF13346.1 gi|57641513|ref|YP_183991.1| - 0.0024 17.1 12.3 0.0024 17.1 8.5 2.1 2 0 0 2 2 2 1 ABC-2 family transporter protein Streptin-Immun PF11083.3 gi|57641513|ref|YP_183991.1| - 0.13 12.3 0.9 0.22 11.5 0.6 1.4 1 0 0 1 1 1 0 Lantibiotic streptin immunity protein MbeD_MobD PF04899.7 gi|57641513|ref|YP_183991.1| - 0.13 12.1 0.6 0.25 11.2 0.4 1.4 1 0 0 1 1 1 0 MbeD/MobD like Tetraspannin PF00335.15 gi|57641513|ref|YP_183991.1| - 2.4 7.3 13.3 89 2.2 9.2 2.4 1 1 0 1 1 1 0 Tetraspanin family DUF4006 PF13179.1 gi|57641513|ref|YP_183991.1| - 4.2 6.9 10.3 2.7 7.6 0.1 3.8 4 0 0 4 4 4 0 Family of unknown function (DUF4006) ABC_tran PF00005.22 gi|57641514|ref|YP_183992.1| - 7.6e-29 100.7 0.0 1.3e-28 99.9 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|57641514|ref|YP_183992.1| - 2e-14 54.2 0.2 4.6e-10 39.9 0.0 2.2 1 1 0 2 2 2 2 AAA domain DUF4162 PF13732.1 gi|57641514|ref|YP_183992.1| - 9.4e-05 22.8 0.0 0.00023 21.6 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) Rad17 PF03215.10 gi|57641514|ref|YP_183992.1| - 0.00075 18.2 0.0 0.001 17.8 0.0 1.1 1 0 0 1 1 1 1 Rad17 cell cycle checkpoint protein Ribosomal_S5_C PF03719.10 gi|57641514|ref|YP_183992.1| - 0.051 12.8 0.0 0.12 11.6 0.0 1.6 1 0 0 1 1 1 0 Ribosomal protein S5, C-terminal domain AAA_29 PF13555.1 gi|57641514|ref|YP_183992.1| - 0.11 11.9 0.2 0.23 11.0 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|57641514|ref|YP_183992.1| - 0.44 10.8 4.3 0.63 10.3 3.0 1.6 1 1 0 1 1 1 0 AAA domain CxxCxxCC PF03692.10 gi|57641515|ref|YP_183993.1| - 6e-19 68.3 0.5 9.3e-19 67.6 0.3 1.3 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain DUF3109 PF11307.3 gi|57641515|ref|YP_183993.1| - 0.04 13.4 0.0 0.058 12.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3109) UPF0113 PF03657.8 gi|57641516|ref|YP_183994.1| - 2.6e-48 163.7 1.0 2.9e-48 163.5 0.7 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0113) TruB-C_2 PF09157.6 gi|57641516|ref|YP_183994.1| - 0.11 12.4 0.0 0.21 11.4 0.0 1.4 1 0 0 1 1 1 0 Pseudouridine synthase II TruB, C-terminal Arteri_env PF01606.11 gi|57641517|ref|YP_183995.1| - 0.089 12.4 0.1 0.11 12.1 0.0 1.2 1 0 0 1 1 1 0 Arterivirus envelope protein DUF3302 PF11742.3 gi|57641521|ref|YP_183999.1| - 0.13 12.0 1.6 0.27 11.1 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3302) AzlD PF05437.7 gi|57641521|ref|YP_183999.1| - 5.8 6.9 13.4 1.4 8.9 4.7 2.3 2 1 0 2 2 2 0 Branched-chain amino acid transport protein (AzlD) ABC_tran PF00005.22 gi|57641523|ref|YP_184001.1| - 1.3e-21 77.3 0.0 1.7e-21 76.9 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|57641523|ref|YP_184001.1| - 2.8e-10 40.6 1.0 0.0001 22.3 0.0 2.1 1 1 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|57641523|ref|YP_184001.1| - 8.2e-06 25.2 0.0 0.0086 15.3 0.0 2.3 3 0 0 3 3 3 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|57641523|ref|YP_184001.1| - 9.6e-06 26.0 0.0 1.2e-05 25.7 0.0 1.1 1 0 0 1 1 1 1 AAA domain ABC_ATPase PF09818.4 gi|57641523|ref|YP_184001.1| - 2.3e-05 23.1 0.1 0.025 13.1 0.0 2.1 2 0 0 2 2 2 2 Predicted ATPase of the ABC class AAA_29 PF13555.1 gi|57641523|ref|YP_184001.1| - 0.00032 20.1 0.0 0.00063 19.2 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF258 PF03193.11 gi|57641523|ref|YP_184001.1| - 0.0027 16.9 0.0 0.0038 16.4 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_10 PF12846.2 gi|57641523|ref|YP_184001.1| - 0.0075 15.7 0.1 0.024 14.0 0.0 1.7 2 0 0 2 2 2 1 AAA-like domain AAA_25 PF13481.1 gi|57641523|ref|YP_184001.1| - 0.0079 15.6 0.0 0.15 11.4 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_15 PF13175.1 gi|57641523|ref|YP_184001.1| - 0.022 13.8 0.0 5.2 5.9 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain AAA_22 PF13401.1 gi|57641523|ref|YP_184001.1| - 0.034 14.2 0.0 0.078 13.1 0.0 1.6 1 1 0 1 1 1 0 AAA domain SbcCD_C PF13558.1 gi|57641523|ref|YP_184001.1| - 0.042 13.7 0.0 0.073 12.9 0.0 1.4 1 0 0 1 1 1 0 Putative exonuclease SbcCD, C subunit MutS_V PF00488.16 gi|57641523|ref|YP_184001.1| - 0.061 12.7 0.0 0.12 11.8 0.0 1.4 1 0 0 1 1 1 0 MutS domain V PEGA PF08308.6 gi|57641524|ref|YP_184002.1| - 1.5e-42 143.2 1.7 1.3e-16 60.1 0.0 4.5 3 1 1 4 4 4 4 PEGA domain CarboxypepD_reg PF13620.1 gi|57641524|ref|YP_184002.1| - 2.9e-11 43.2 2.6 0.0037 17.3 0.0 5.0 5 0 0 5 5 5 3 Carboxypeptidase regulatory-like domain DUF4480 PF13715.1 gi|57641524|ref|YP_184002.1| - 0.00027 20.9 0.0 0.19 11.8 0.0 3.2 2 0 0 2 2 2 2 Domain of unknown function (DUF4480) DUF4493 PF14900.1 gi|57641524|ref|YP_184002.1| - 0.016 14.8 0.1 1.4 8.5 0.0 3.3 4 0 0 4 4 4 0 Domain of unknown function (DUF4493) KaiC PF06745.8 gi|57641525|ref|YP_184003.1| - 1.9e-90 301.9 0.0 2.2e-90 301.7 0.0 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|57641525|ref|YP_184003.1| - 2.4e-10 40.1 0.0 4e-10 39.4 0.0 1.2 1 0 0 1 1 1 1 AAA domain GvpD PF07088.6 gi|57641525|ref|YP_184003.1| - 2.7e-07 29.3 0.0 3.7e-07 28.8 0.0 1.1 1 0 0 1 1 1 1 GvpD gas vesicle protein AAA_19 PF13245.1 gi|57641525|ref|YP_184003.1| - 0.016 14.9 0.2 0.04 13.6 0.1 1.6 1 0 0 1 1 1 0 Part of AAA domain AAA_17 PF13207.1 gi|57641525|ref|YP_184003.1| - 0.03 15.1 0.1 0.12 13.2 0.1 2.1 1 1 0 1 1 1 0 AAA domain T2SE PF00437.15 gi|57641525|ref|YP_184003.1| - 0.04 12.8 0.0 0.076 11.9 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein Complex1_49kDa PF00346.14 gi|57641525|ref|YP_184003.1| - 0.05 12.6 0.0 0.068 12.1 0.0 1.1 1 0 0 1 1 1 0 Respiratory-chain NADH dehydrogenase, 49 Kd subunit DUF2075 PF09848.4 gi|57641525|ref|YP_184003.1| - 0.059 12.3 0.0 0.073 12.0 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) PPV_E1_C PF00519.12 gi|57641525|ref|YP_184003.1| - 0.073 11.6 0.0 0.14 10.7 0.0 1.4 1 0 0 1 1 1 0 Papillomavirus helicase AAA_22 PF13401.1 gi|57641525|ref|YP_184003.1| - 0.08 13.0 0.0 1.1 9.4 0.0 2.2 2 1 0 2 2 2 0 AAA domain AAA_14 PF13173.1 gi|57641525|ref|YP_184003.1| - 0.081 12.8 0.0 0.13 12.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|57641525|ref|YP_184003.1| - 0.093 13.0 0.0 0.15 12.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain DnaB_C PF03796.10 gi|57641525|ref|YP_184003.1| - 0.13 11.1 0.0 0.25 10.2 0.0 1.5 2 0 0 2 2 2 0 DnaB-like helicase C terminal domain AAA_33 PF13671.1 gi|57641525|ref|YP_184003.1| - 0.15 11.9 0.0 0.3 10.9 0.0 1.6 2 0 0 2 2 2 0 AAA domain HTH_38 PF13936.1 gi|57641526|ref|YP_184004.1| - 2.8e-07 29.9 0.4 1.9e-06 27.3 0.1 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|57641526|ref|YP_184004.1| - 2.8e-05 23.6 0.1 8.4e-05 22.0 0.0 1.9 2 0 0 2 2 1 1 Homeodomain-like domain HTH_11 PF08279.7 gi|57641526|ref|YP_184004.1| - 4.2e-05 23.1 0.2 0.00017 21.1 0.0 2.1 2 0 0 2 2 1 1 HTH domain HTH_20 PF12840.2 gi|57641526|ref|YP_184004.1| - 5.5e-05 22.8 0.8 0.00022 20.9 0.0 2.3 2 1 1 3 3 1 1 Helix-turn-helix domain Sigma70_r4 PF04545.11 gi|57641526|ref|YP_184004.1| - 9.1e-05 21.6 3.2 0.003 16.8 0.2 2.8 2 1 0 2 2 2 1 Sigma-70, region 4 Sigma70_r4_2 PF08281.7 gi|57641526|ref|YP_184004.1| - 0.00024 20.5 0.9 0.00048 19.5 0.0 1.9 2 0 0 2 2 1 1 Sigma-70, region 4 HTH_40 PF14493.1 gi|57641526|ref|YP_184004.1| - 0.00033 20.8 5.5 0.00034 20.7 2.8 1.8 1 1 1 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|57641526|ref|YP_184004.1| - 0.00041 19.6 0.9 0.0014 17.9 0.0 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding KorB PF08535.5 gi|57641526|ref|YP_184004.1| - 0.00044 20.3 2.0 0.0014 18.7 0.5 2.2 1 1 1 2 2 2 1 KorB domain AAA_13 PF13166.1 gi|57641526|ref|YP_184004.1| - 0.00046 18.8 5.2 0.00049 18.7 3.6 1.1 1 0 0 1 1 1 1 AAA domain bZIP_1 PF00170.16 gi|57641526|ref|YP_184004.1| - 0.00082 19.2 5.5 0.00082 19.2 3.8 3.0 1 1 1 2 2 2 1 bZIP transcription factor HTH_29 PF13551.1 gi|57641526|ref|YP_184004.1| - 0.00086 19.4 1.0 0.005 16.9 0.7 2.2 1 1 0 1 1 1 1 Winged helix-turn helix GerE PF00196.14 gi|57641526|ref|YP_184004.1| - 0.0011 18.1 0.1 0.0023 17.2 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family DUF904 PF06005.7 gi|57641526|ref|YP_184004.1| - 0.0012 19.1 14.7 0.0012 19.1 10.2 1.9 2 1 0 2 2 1 1 Protein of unknown function (DUF904) MarR_2 PF12802.2 gi|57641526|ref|YP_184004.1| - 0.0014 18.2 0.1 0.0032 17.0 0.0 1.7 1 0 0 1 1 1 1 MarR family HTH_28 PF13518.1 gi|57641526|ref|YP_184004.1| - 0.0024 17.8 0.0 0.0057 16.6 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain Prominin PF05478.6 gi|57641526|ref|YP_184004.1| - 0.0034 15.0 3.0 0.0042 14.6 2.1 1.2 1 0 0 1 1 1 1 Prominin EAP30 PF04157.11 gi|57641526|ref|YP_184004.1| - 0.0039 16.3 3.6 0.14 11.2 0.0 2.2 2 0 0 2 2 2 1 EAP30/Vps36 family HTH_19 PF12844.2 gi|57641526|ref|YP_184004.1| - 0.004 17.1 0.2 0.004 17.1 0.1 2.2 2 1 0 2 2 1 1 Helix-turn-helix domain HTH_3 PF01381.17 gi|57641526|ref|YP_184004.1| - 0.0048 16.7 0.2 0.012 15.4 0.2 1.8 1 0 0 1 1 1 1 Helix-turn-helix TrmB PF01978.14 gi|57641526|ref|YP_184004.1| - 0.0048 16.5 0.7 0.012 15.3 0.1 1.9 2 0 0 2 2 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.15 gi|57641526|ref|YP_184004.1| - 0.0062 16.1 0.0 0.027 14.1 0.0 2.0 1 1 1 2 2 2 1 Bacterial regulatory protein, arsR family HTH_DeoR PF08220.7 gi|57641526|ref|YP_184004.1| - 0.0065 15.9 0.1 0.014 14.8 0.0 1.6 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain bZIP_2 PF07716.10 gi|57641526|ref|YP_184004.1| - 0.0069 16.1 13.1 0.22 11.3 8.4 2.7 1 1 1 2 2 2 1 Basic region leucine zipper HTH_31 PF13560.1 gi|57641526|ref|YP_184004.1| - 0.0076 16.4 0.2 0.018 15.2 0.2 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain GreA_GreB_N PF03449.10 gi|57641526|ref|YP_184004.1| - 0.0083 16.1 5.7 0.0083 16.1 4.0 3.1 2 1 1 3 3 2 1 Transcription elongation factor, N-terminal HTH_17 PF12728.2 gi|57641526|ref|YP_184004.1| - 0.013 15.7 0.1 0.23 11.7 0.1 2.4 1 1 0 1 1 1 0 Helix-turn-helix domain IF2_N PF04760.10 gi|57641526|ref|YP_184004.1| - 0.016 14.8 0.1 0.049 13.3 0.0 1.9 1 0 0 1 1 1 0 Translation initiation factor IF-2, N-terminal region HALZ PF02183.13 gi|57641526|ref|YP_184004.1| - 0.017 14.7 4.4 0.017 14.7 3.1 2.8 1 1 1 2 2 2 0 Homeobox associated leucine zipper TBPIP PF07106.8 gi|57641526|ref|YP_184004.1| - 0.02 14.4 11.3 0.02 14.4 7.8 2.1 1 1 1 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) DUF4200 PF13863.1 gi|57641526|ref|YP_184004.1| - 0.021 14.7 9.5 0.021 14.7 6.6 1.8 2 0 0 2 2 1 0 Domain of unknown function (DUF4200) HalX PF08663.5 gi|57641526|ref|YP_184004.1| - 0.033 14.1 4.3 0.17 11.8 1.6 2.4 1 1 1 2 2 2 0 HalX domain NPV_P10 PF05531.7 gi|57641526|ref|YP_184004.1| - 0.036 14.2 2.2 0.036 14.2 1.6 2.0 3 0 0 3 3 1 0 Nucleopolyhedrovirus P10 protein FlaC_arch PF05377.6 gi|57641526|ref|YP_184004.1| - 0.047 13.6 11.4 0.1 12.4 4.2 3.2 2 2 1 3 3 3 0 Flagella accessory protein C (FlaC) AAA_23 PF13476.1 gi|57641526|ref|YP_184004.1| - 0.049 13.9 7.8 0.053 13.8 5.4 1.1 1 0 0 1 1 1 0 AAA domain Mod_r PF07200.8 gi|57641526|ref|YP_184004.1| - 0.049 13.5 11.7 0.27 11.1 7.2 2.1 1 1 1 2 2 2 0 Modifier of rudimentary (Mod(r)) protein DUF342 PF03961.8 gi|57641526|ref|YP_184004.1| - 0.052 11.9 11.0 0.062 11.7 7.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF342) Spc7 PF08317.6 gi|57641526|ref|YP_184004.1| - 0.059 12.0 13.3 0.074 11.7 9.2 1.2 1 0 0 1 1 1 0 Spc7 kinetochore protein HTH_IclR PF09339.5 gi|57641526|ref|YP_184004.1| - 0.068 12.7 0.1 0.14 11.7 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain Herpes_U30 PF04523.8 gi|57641526|ref|YP_184004.1| - 0.073 10.5 0.7 0.086 10.2 0.5 1.1 1 0 0 1 1 1 0 Herpes virus tegument protein U30 HTH_7 PF02796.10 gi|57641526|ref|YP_184004.1| - 0.074 12.9 0.1 0.25 11.2 0.0 2.0 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase DUF550 PF04447.7 gi|57641526|ref|YP_184004.1| - 0.076 12.6 1.1 2.6 7.7 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF550) DUF3450 PF11932.3 gi|57641526|ref|YP_184004.1| - 0.089 12.0 6.6 0.11 11.7 4.6 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3450) Laminin_II PF06009.7 gi|57641526|ref|YP_184004.1| - 0.093 12.4 9.0 1.3 8.8 6.3 2.1 1 1 0 1 1 1 0 Laminin Domain II Herpes_UL6 PF01763.11 gi|57641526|ref|YP_184004.1| - 0.095 10.8 3.2 0.11 10.6 2.2 1.2 1 0 0 1 1 1 0 Herpesvirus UL6 like GrpE PF01025.14 gi|57641526|ref|YP_184004.1| - 0.11 12.0 13.1 0.068 12.7 7.8 1.5 1 1 0 1 1 1 0 GrpE DUF4475 PF14753.1 gi|57641526|ref|YP_184004.1| - 0.11 11.9 0.4 0.18 11.2 0.2 1.5 1 1 1 2 2 1 0 Domain of unknown function (DUF4475) HTH_Tnp_Tc3_1 PF11427.3 gi|57641526|ref|YP_184004.1| - 0.12 12.0 0.0 0.39 10.3 0.0 1.9 1 0 0 1 1 1 0 Tc3 transposase DUF883 PF05957.8 gi|57641526|ref|YP_184004.1| - 0.12 12.7 12.2 5.3 7.5 1.7 3.1 1 1 2 3 3 3 0 Bacterial protein of unknown function (DUF883) Prefoldin_2 PF01920.15 gi|57641526|ref|YP_184004.1| - 0.13 12.0 17.6 1.1 8.9 12.3 2.2 1 1 0 1 1 1 0 Prefoldin subunit GAS PF13851.1 gi|57641526|ref|YP_184004.1| - 0.13 11.4 15.5 0.18 10.9 10.6 1.4 1 1 0 1 1 1 0 Growth-arrest specific micro-tubule binding Phlebovirus_NSM PF07246.6 gi|57641526|ref|YP_184004.1| - 0.14 11.3 5.1 0.17 11.0 3.5 1.2 1 0 0 1 1 1 0 Phlebovirus nonstructural protein NS-M Baculo_PEP_C PF04513.7 gi|57641526|ref|YP_184004.1| - 0.15 11.8 1.2 0.36 10.6 0.5 1.8 1 1 1 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus TMF_DNA_bd PF12329.3 gi|57641526|ref|YP_184004.1| - 0.16 11.8 19.7 0.046 13.5 11.1 2.0 2 1 0 2 2 1 0 TATA element modulatory factor 1 DNA binding APG6 PF04111.7 gi|57641526|ref|YP_184004.1| - 0.16 11.0 11.4 0.21 10.5 7.9 1.2 1 0 0 1 1 1 0 Autophagy protein Apg6 DUF1515 PF07439.6 gi|57641526|ref|YP_184004.1| - 0.17 11.6 5.0 1.4 8.7 3.4 2.2 1 1 0 1 1 1 0 Protein of unknown function (DUF1515) HTH_Tnp_1 PF01527.15 gi|57641526|ref|YP_184004.1| - 0.18 11.7 5.5 3.7 7.5 3.8 2.4 1 1 0 1 1 1 0 Transposase DUF972 PF06156.8 gi|57641526|ref|YP_184004.1| - 0.22 11.8 13.7 0.08 13.2 6.4 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF972) Kinetocho_Slk19 PF12709.2 gi|57641526|ref|YP_184004.1| - 0.24 11.4 13.8 1.1 9.3 6.3 2.4 1 1 1 2 2 2 0 Central kinetochore-associated Hemerythrin PF01814.18 gi|57641526|ref|YP_184004.1| - 0.24 11.5 8.8 7.1 6.7 5.9 2.6 1 1 1 2 2 2 0 Hemerythrin HHE cation binding domain TIR PF01582.15 gi|57641526|ref|YP_184004.1| - 0.27 10.6 3.2 0.44 9.9 2.1 1.4 1 1 0 1 1 1 0 TIR domain ERM PF00769.14 gi|57641526|ref|YP_184004.1| - 0.28 10.6 17.8 0.37 10.2 12.3 1.2 1 0 0 1 1 1 0 Ezrin/radixin/moesin family TPR_MLP1_2 PF07926.7 gi|57641526|ref|YP_184004.1| - 0.29 10.8 15.5 0.48 10.1 9.8 1.9 1 1 0 1 1 1 0 TPR/MLP1/MLP2-like protein DivIVA PF05103.8 gi|57641526|ref|YP_184004.1| - 0.3 11.1 15.0 0.16 12.0 7.2 2.5 2 1 0 2 2 2 0 DivIVA protein BLOC1_2 PF10046.4 gi|57641526|ref|YP_184004.1| - 0.31 11.2 8.5 0.43 10.7 5.4 1.8 1 1 0 1 1 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Syntaxin-6_N PF09177.6 gi|57641526|ref|YP_184004.1| - 0.36 11.2 8.9 3 8.3 6.1 2.2 1 1 0 1 1 1 0 Syntaxin 6, N-terminal TSC22 PF01166.13 gi|57641526|ref|YP_184004.1| - 0.43 10.5 12.2 0.12 12.3 5.4 2.5 2 0 0 2 2 1 0 TSC-22/dip/bun family CENP-F_leu_zip PF10473.4 gi|57641526|ref|YP_184004.1| - 0.5 10.2 20.2 0.5 10.2 13.2 1.6 1 1 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Nup54 PF13874.1 gi|57641526|ref|YP_184004.1| - 0.55 9.9 9.4 0.45 10.1 5.0 1.8 1 1 1 2 2 2 0 Nucleoporin complex subunit 54 ORF6C PF10552.4 gi|57641526|ref|YP_184004.1| - 0.71 9.6 7.0 0.91 9.2 4.0 1.9 2 0 0 2 2 1 0 ORF6C domain DUF4140 PF13600.1 gi|57641526|ref|YP_184004.1| - 0.75 10.2 5.8 0.31 11.4 2.0 1.9 2 0 0 2 2 1 0 N-terminal domain of unknown function (DUF4140) HDV_ag PF01517.13 gi|57641526|ref|YP_184004.1| - 0.79 9.3 8.0 0.31 10.6 3.4 1.9 1 1 1 2 2 2 0 Hepatitis delta virus delta antigen DUF2316 PF10078.4 gi|57641526|ref|YP_184004.1| - 0.81 9.7 4.1 1.4 8.9 0.0 2.3 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2316) Atg14 PF10186.4 gi|57641526|ref|YP_184004.1| - 0.83 8.5 8.3 1.1 8.1 5.8 1.2 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 ADIP PF11559.3 gi|57641526|ref|YP_184004.1| - 0.94 9.3 11.6 0.78 9.6 7.1 1.7 1 1 0 1 1 1 0 Afadin- and alpha -actinin-Binding MAP7 PF05672.6 gi|57641526|ref|YP_184004.1| - 0.96 8.8 19.5 2.1 7.7 13.5 1.6 1 1 0 1 1 1 0 MAP7 (E-MAP-115) family Bacillus_HBL PF05791.6 gi|57641526|ref|YP_184004.1| - 1 8.7 6.0 0.54 9.6 2.6 1.7 2 0 0 2 2 1 0 Bacillus haemolytic enterotoxin (HBL) Macoilin PF09726.4 gi|57641526|ref|YP_184004.1| - 1 7.5 15.5 1.2 7.3 10.8 1.0 1 0 0 1 1 1 0 Transmembrane protein DMPK_coil PF08826.5 gi|57641526|ref|YP_184004.1| - 1.2 9.1 16.3 2.3 8.2 8.5 2.6 1 1 1 2 2 2 0 DMPK coiled coil domain like Transposase_22 PF02994.9 gi|57641526|ref|YP_184004.1| - 1.2 7.5 13.3 1.4 7.3 9.2 1.1 1 0 0 1 1 1 0 L1 transposable element Seryl_tRNA_N PF02403.17 gi|57641526|ref|YP_184004.1| - 1.2 9.1 14.2 3.9 7.5 9.6 2.2 1 1 0 1 1 1 0 Seryl-tRNA synthetase N-terminal domain DUF607 PF04678.8 gi|57641526|ref|YP_184004.1| - 1.2 8.9 6.6 2 8.2 4.5 1.4 1 1 0 1 1 1 0 Protein of unknown function, DUF607 Lumazine_bd PF12870.2 gi|57641526|ref|YP_184004.1| - 1.3 9.1 6.0 0.96 9.5 2.7 1.8 2 1 0 2 2 1 0 Lumazine-binding domain COG2 PF06148.6 gi|57641526|ref|YP_184004.1| - 1.4 8.8 9.4 5.9 6.7 3.0 2.3 2 0 0 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 IncA PF04156.9 gi|57641526|ref|YP_184004.1| - 1.5 8.4 15.6 0.37 10.3 8.0 1.8 1 1 1 2 2 2 0 IncA protein TMPIT PF07851.8 gi|57641526|ref|YP_184004.1| - 1.5 7.7 7.2 1 8.3 1.2 1.9 1 1 1 2 2 2 0 TMPIT-like protein DUF2730 PF10805.3 gi|57641526|ref|YP_184004.1| - 1.6 8.4 10.0 0.4 10.4 4.2 2.0 2 0 0 2 2 1 0 Protein of unknown function (DUF2730) DUF3618 PF12277.3 gi|57641526|ref|YP_184004.1| - 1.7 8.7 6.1 2.8 8.0 0.1 3.1 2 2 2 4 4 2 0 Protein of unknown function (DUF3618) DASH_Spc34 PF08657.5 gi|57641526|ref|YP_184004.1| - 1.7 8.2 10.3 5.8 6.4 6.4 2.3 2 1 0 2 2 2 0 DASH complex subunit Spc34 HisKA_3 PF07730.8 gi|57641526|ref|YP_184004.1| - 2 8.8 7.1 2.4 8.5 0.7 3.1 2 2 1 3 3 3 0 Histidine kinase Med4 PF10018.4 gi|57641526|ref|YP_184004.1| - 2 7.7 10.8 1.2 8.4 5.5 2.0 1 1 1 2 2 2 0 Vitamin-D-receptor interacting Mediator subunit 4 DUF4446 PF14584.1 gi|57641526|ref|YP_184004.1| - 2.1 8.1 7.5 1.3 8.8 3.6 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF4446) Syntaxin_2 PF14523.1 gi|57641526|ref|YP_184004.1| - 2.4 8.2 9.8 5.9 6.9 4.4 2.3 1 1 1 2 2 2 0 Syntaxin-like protein Methyltransf_14 PF08484.6 gi|57641526|ref|YP_184004.1| - 2.8 7.4 5.2 2.5 7.6 1.7 2.0 2 0 0 2 2 2 0 C-methyltransferase C-terminal domain Bap31 PF05529.7 gi|57641526|ref|YP_184004.1| - 2.8 7.3 10.3 5.8 6.3 7.1 1.7 1 1 0 1 1 1 0 B-cell receptor-associated protein 31-like KfrA_N PF11740.3 gi|57641526|ref|YP_184004.1| - 2.8 8.3 10.8 9.6 6.6 7.5 1.9 1 1 0 1 1 1 0 Plasmid replication region DNA-binding N-term EMP24_GP25L PF01105.19 gi|57641526|ref|YP_184004.1| - 3 7.5 5.5 3.5 7.3 3.4 1.4 1 1 0 1 1 1 0 emp24/gp25L/p24 family/GOLD Mnd1 PF03962.10 gi|57641526|ref|YP_184004.1| - 3.1 7.4 13.4 14 5.3 9.5 1.9 1 1 1 2 2 2 0 Mnd1 family DUF4164 PF13747.1 gi|57641526|ref|YP_184004.1| - 3.1 7.9 14.0 4.4 7.4 6.5 2.5 1 1 0 2 2 2 0 Domain of unknown function (DUF4164) Ax_dynein_light PF10211.4 gi|57641526|ref|YP_184004.1| - 3.3 7.5 15.2 0.65 9.8 7.3 1.9 1 1 1 2 2 2 0 Axonemal dynein light chain DivIC PF04977.10 gi|57641526|ref|YP_184004.1| - 3.5 7.1 15.9 7.6 6.1 8.3 3.0 2 2 0 2 2 1 0 Septum formation initiator DUF465 PF04325.8 gi|57641526|ref|YP_184004.1| - 5.5 6.7 13.6 4.3 7.1 6.7 2.7 2 1 1 3 3 2 0 Protein of unknown function (DUF465) V_ATPase_I PF01496.14 gi|57641526|ref|YP_184004.1| - 5.8 4.6 13.3 15 3.2 9.2 1.7 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family Med9 PF07544.8 gi|57641526|ref|YP_184004.1| - 6 6.6 11.6 1.8 8.3 4.2 2.6 2 1 1 3 3 2 0 RNA polymerase II transcription mediator complex subunit 9 Occludin_ELL PF07303.8 gi|57641526|ref|YP_184004.1| - 6.1 7.6 9.9 3.5 8.4 3.8 2.3 2 1 0 2 2 2 0 Occludin homology domain M PF02370.11 gi|57641526|ref|YP_184004.1| - 7.4 7.3 14.3 1.1 9.7 3.7 3.0 1 1 1 2 2 2 0 M protein repeat DUF3373 PF11853.3 gi|57641526|ref|YP_184004.1| - 8.4 4.7 7.2 14 4.0 5.0 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3373) DUF948 PF06103.6 gi|57641526|ref|YP_184004.1| - 10 6.0 10.3 3.1 7.7 2.7 2.5 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF948) AdoMet_dc PF02675.10 gi|57641527|ref|YP_184005.1| - 5.1e-37 125.9 0.0 6.5e-37 125.6 0.0 1.1 1 0 0 1 1 1 1 S-adenosylmethionine decarboxylase SecD_SecF PF02355.11 gi|57641528|ref|YP_184006.1| - 2.5e-40 137.6 12.0 3.4e-40 137.2 8.3 1.2 1 0 0 1 1 1 1 Protein export membrane protein Patched PF02460.13 gi|57641528|ref|YP_184006.1| - 1e-05 23.6 9.8 1.4e-05 23.3 6.8 1.1 1 0 0 1 1 1 1 Patched family MMPL PF03176.10 gi|57641528|ref|YP_184006.1| - 0.00016 20.4 15.0 0.00027 19.7 10.4 1.2 1 0 0 1 1 1 1 MMPL family Sec_GG PF07549.9 gi|57641528|ref|YP_184006.1| - 0.0041 16.2 0.1 0.011 14.9 0.1 1.7 1 0 0 1 1 1 1 SecD/SecF GG Motif ACR_tran PF00873.14 gi|57641528|ref|YP_184006.1| - 0.0045 14.4 9.1 0.0059 14.0 6.3 1.2 1 0 0 1 1 1 1 AcrB/AcrD/AcrF family Sterol-sensing PF12349.3 gi|57641528|ref|YP_184006.1| - 0.22 10.9 13.3 0.046 13.1 6.8 1.6 1 1 0 1 1 1 0 Sterol-sensing domain of SREBP cleavage-activation SecD_SecF PF02355.11 gi|57641529|ref|YP_184007.1| - 1.1e-19 70.3 8.2 2e-19 69.5 5.7 1.3 1 0 0 1 1 1 1 Protein export membrane protein MMPL PF03176.10 gi|57641529|ref|YP_184007.1| - 0.002 16.9 11.1 0.0034 16.1 7.7 1.3 1 0 0 1 1 1 1 MMPL family Sec_GG PF07549.9 gi|57641529|ref|YP_184007.1| - 0.002 17.2 0.1 0.0044 16.1 0.1 1.6 1 0 0 1 1 1 1 SecD/SecF GG Motif Patched PF02460.13 gi|57641529|ref|YP_184007.1| - 0.029 12.3 6.8 0.041 11.7 4.7 1.2 1 0 0 1 1 1 0 Patched family RimM PF01782.13 gi|57641529|ref|YP_184007.1| - 0.07 13.0 0.0 0.14 12.0 0.0 1.5 1 0 0 1 1 1 0 RimM N-terminal domain TrkA_N PF02254.13 gi|57641530|ref|YP_184008.1| - 2.3e-32 111.4 0.1 9e-32 109.4 0.1 1.8 2 0 0 2 2 2 1 TrkA-N domain TrkA_C PF02080.16 gi|57641530|ref|YP_184008.1| - 5.1e-16 58.0 0.1 2.7e-15 55.7 0.0 2.2 3 0 0 3 3 3 1 TrkA-C domain ApbA PF02558.11 gi|57641530|ref|YP_184008.1| - 2.7e-06 26.8 0.0 4.5e-06 26.1 0.0 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Shikimate_DH PF01488.15 gi|57641530|ref|YP_184008.1| - 6.5e-05 23.0 0.3 0.00022 21.3 0.1 1.9 1 1 1 2 2 2 1 Shikimate / quinate 5-dehydrogenase UDPG_MGDP_dh_N PF03721.9 gi|57641530|ref|YP_184008.1| - 8.4e-05 22.0 0.2 0.0013 18.2 0.0 2.2 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Saccharop_dh PF03435.13 gi|57641530|ref|YP_184008.1| - 0.00015 20.8 0.1 0.00034 19.7 0.1 1.5 2 0 0 2 2 2 1 Saccharopine dehydrogenase NAD_binding_10 PF13460.1 gi|57641530|ref|YP_184008.1| - 0.00015 21.7 0.1 0.00024 21.1 0.1 1.3 1 0 0 1 1 1 1 NADH(P)-binding NAD_Gly3P_dh_N PF01210.18 gi|57641530|ref|YP_184008.1| - 0.00019 21.1 0.0 0.0015 18.3 0.0 2.1 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NmrA PF05368.8 gi|57641530|ref|YP_184008.1| - 0.0002 20.6 0.1 0.00039 19.7 0.0 1.4 1 0 0 1 1 1 1 NmrA-like family AlaDh_PNT_C PF01262.16 gi|57641530|ref|YP_184008.1| - 0.00024 20.7 0.1 0.00048 19.7 0.0 1.6 1 1 1 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain Thi4 PF01946.12 gi|57641530|ref|YP_184008.1| - 0.00078 18.6 0.1 0.0014 17.7 0.0 1.4 1 0 0 1 1 1 1 Thi4 family DAO PF01266.19 gi|57641530|ref|YP_184008.1| - 0.00082 18.3 0.0 0.0013 17.7 0.0 1.3 1 1 0 1 1 1 1 FAD dependent oxidoreductase 3HCDH_N PF02737.13 gi|57641530|ref|YP_184008.1| - 0.0021 17.7 0.2 0.0036 16.9 0.1 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FAD_binding_3 PF01494.14 gi|57641530|ref|YP_184008.1| - 0.0025 16.9 0.1 0.0036 16.4 0.1 1.2 1 0 0 1 1 1 1 FAD binding domain F420_oxidored PF03807.12 gi|57641530|ref|YP_184008.1| - 0.0047 17.3 0.1 0.012 16.0 0.0 1.7 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Pyr_redox PF00070.22 gi|57641530|ref|YP_184008.1| - 0.0047 17.2 0.1 0.012 16.0 0.0 1.7 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_7 PF13241.1 gi|57641530|ref|YP_184008.1| - 0.0062 16.7 0.2 0.016 15.4 0.1 1.8 1 1 0 1 1 1 1 Putative NAD(P)-binding XdhC_C PF13478.1 gi|57641530|ref|YP_184008.1| - 0.018 15.3 0.0 0.028 14.7 0.0 1.4 1 0 0 1 1 1 0 XdhC Rossmann domain NAD_binding_8 PF13450.1 gi|57641530|ref|YP_184008.1| - 0.056 13.4 0.0 0.12 12.4 0.0 1.5 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain RrnaAD PF00398.15 gi|57641530|ref|YP_184008.1| - 0.064 12.2 0.1 1.1 8.2 0.0 2.3 2 1 0 2 2 2 0 Ribosomal RNA adenine dimethylase AdoHcyase_NAD PF00670.16 gi|57641530|ref|YP_184008.1| - 0.067 13.0 0.2 0.13 12.0 0.1 1.8 1 1 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|57641530|ref|YP_184008.1| - 0.071 12.2 0.0 0.1 11.7 0.0 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.10 gi|57641530|ref|YP_184008.1| - 0.081 12.7 0.0 0.54 10.0 0.0 2.1 2 0 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase DapB_N PF01113.15 gi|57641530|ref|YP_184008.1| - 0.1 12.5 0.3 0.33 10.8 0.2 2.0 1 1 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus Pyr_redox_2 PF07992.9 gi|57641530|ref|YP_184008.1| - 0.12 12.2 0.1 0.16 11.8 0.1 1.6 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.9 gi|57641530|ref|YP_184008.1| - 0.16 10.5 0.0 0.23 10.0 0.0 1.2 1 0 0 1 1 1 0 Tryptophan halogenase ATP-synt_B PF00430.13 gi|57641531|ref|YP_184009.1| - 5.7e-09 35.8 41.2 1.6e-07 31.1 15.9 1.9 1 1 1 2 2 2 2 ATP synthase B/B' CF(0) V-ATPase_G PF03179.10 gi|57641531|ref|YP_184009.1| - 0.00015 22.0 26.1 0.00053 20.2 18.1 1.7 1 1 0 1 1 1 1 Vacuolar (H+)-ATPase G subunit DUF3552 PF12072.3 gi|57641531|ref|YP_184009.1| - 0.00028 20.1 26.2 0.023 13.9 8.8 2.1 1 1 1 2 2 2 2 Domain of unknown function (DUF3552) HrpE PF06188.7 gi|57641531|ref|YP_184009.1| - 0.0017 18.1 10.4 0.0031 17.2 7.2 1.5 1 1 0 1 1 1 1 HrpE/YscL/FliH and V-type ATPase subunit E Lipoprotein_6 PF01441.14 gi|57641531|ref|YP_184009.1| - 0.0088 15.9 13.2 0.011 15.6 9.2 1.0 1 0 0 1 1 1 1 Lipoprotein DivIVA PF05103.8 gi|57641531|ref|YP_184009.1| - 0.039 14.0 19.8 0.082 12.9 9.0 2.2 1 1 1 2 2 2 0 DivIVA protein DUF883 PF05957.8 gi|57641531|ref|YP_184009.1| - 0.16 12.3 12.4 0.16 12.3 2.2 2.1 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) DUF3322 PF11795.3 gi|57641531|ref|YP_184009.1| - 0.22 11.1 3.9 0.25 10.9 2.7 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria N-term (DUF3322) Exonuc_VII_L PF02601.10 gi|57641531|ref|YP_184009.1| - 0.31 10.1 7.4 0.35 10.0 5.1 1.0 1 0 0 1 1 1 0 Exonuclease VII, large subunit Prp19_bind PF06991.6 gi|57641531|ref|YP_184009.1| - 0.96 8.6 19.1 1.1 8.4 13.3 1.1 1 0 0 1 1 1 0 Splicing factor, Prp19-binding domain Membralin PF09746.4 gi|57641531|ref|YP_184009.1| - 2.1 7.3 5.5 2.2 7.2 3.8 1.0 1 0 0 1 1 1 0 Tumour-associated protein Mitofilin PF09731.4 gi|57641531|ref|YP_184009.1| - 2.2 6.8 21.8 2.4 6.7 15.1 1.0 1 0 0 1 1 1 0 Mitochondrial inner membrane protein OmpH PF03938.9 gi|57641531|ref|YP_184009.1| - 2.6 7.9 16.3 2.8 7.8 11.3 1.1 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) DUF262 PF03235.9 gi|57641531|ref|YP_184009.1| - 3 7.7 8.3 3.8 7.4 5.8 1.0 1 0 0 1 1 1 0 Protein of unknown function DUF262 Borrelia_P83 PF05262.6 gi|57641531|ref|YP_184009.1| - 3.6 5.7 18.6 4.6 5.4 12.9 1.1 1 0 0 1 1 1 0 Borrelia P83/100 protein TROVE PF05731.6 gi|57641531|ref|YP_184009.1| - 3.7 6.1 9.0 3.9 6.1 6.2 1.1 1 0 0 1 1 1 0 TROVE domain RE_HpaII PF09561.5 gi|57641531|ref|YP_184009.1| - 4.5 6.3 10.8 5.3 6.1 7.5 1.0 1 0 0 1 1 1 0 HpaII restriction endonuclease NARP1 PF12569.3 gi|57641531|ref|YP_184009.1| - 6.1 5.4 13.0 7.4 5.1 9.0 1.1 1 0 0 1 1 1 0 NMDA receptor-regulated protein 1 vATP-synt_E PF01991.13 gi|57641531|ref|YP_184009.1| - 8 5.6 33.1 2.7 7.2 3.4 2.1 1 1 1 2 2 2 0 ATP synthase (E/31 kDa) subunit V_ATPase_I PF01496.14 gi|57641532|ref|YP_184010.1| - 1.3e-123 413.5 18.2 1.7e-89 300.7 1.6 2.5 1 1 1 2 2 2 2 V-type ATPase 116kDa subunit family FlaC_arch PF05377.6 gi|57641532|ref|YP_184010.1| - 0.0085 15.9 0.5 0.0085 15.9 0.4 2.4 2 0 0 2 2 2 1 Flagella accessory protein C (FlaC) Tropomyosin_1 PF12718.2 gi|57641532|ref|YP_184010.1| - 0.02 14.7 0.2 0.02 14.7 0.1 2.4 2 0 0 2 2 2 0 Tropomyosin like DUF3801 PF12687.2 gi|57641532|ref|YP_184010.1| - 0.056 13.0 5.0 0.089 12.3 3.5 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3801) AAA_23 PF13476.1 gi|57641532|ref|YP_184010.1| - 0.095 13.0 4.9 0.75 10.0 0.6 2.3 2 0 0 2 2 2 0 AAA domain DUF4140 PF13600.1 gi|57641532|ref|YP_184010.1| - 0.13 12.7 1.6 9.9 6.6 0.0 2.9 2 1 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) Prefoldin_2 PF01920.15 gi|57641532|ref|YP_184010.1| - 0.21 11.3 7.3 1.5 8.5 0.2 2.6 2 0 0 2 2 2 0 Prefoldin subunit Bap31 PF05529.7 gi|57641532|ref|YP_184010.1| - 7.9 5.8 6.3 8.1 5.8 2.3 2.2 2 0 0 2 2 2 0 B-cell receptor-associated protein 31-like ATP-synt_C PF00137.16 gi|57641533|ref|YP_184011.1| - 6.6e-32 109.2 35.8 2.7e-16 59.2 8.9 2.2 2 0 0 2 2 2 2 ATP synthase subunit C vATP-synt_E PF01991.13 gi|57641534|ref|YP_184012.1| - 2.8e-55 186.6 17.7 3.1e-55 186.5 12.3 1.0 1 0 0 1 1 1 1 ATP synthase (E/31 kDa) subunit ATP-synt_B PF00430.13 gi|57641534|ref|YP_184012.1| - 0.00064 19.5 17.9 0.00064 19.5 12.4 2.0 2 1 0 2 2 2 1 ATP synthase B/B' CF(0) DUF3552 PF12072.3 gi|57641534|ref|YP_184012.1| - 0.0029 16.8 22.7 0.16 11.1 8.3 2.6 1 1 1 2 2 2 2 Domain of unknown function (DUF3552) AAR2 PF05282.6 gi|57641534|ref|YP_184012.1| - 0.017 14.1 0.3 0.017 14.1 0.2 1.8 1 1 1 2 2 2 0 AAR2 protein Glyco_trans_1_2 PF13524.1 gi|57641534|ref|YP_184012.1| - 0.047 13.9 4.9 0.14 12.4 1.5 2.8 3 0 0 3 3 3 0 Glycosyl transferases group 1 Phi-29_GP3 PF05435.6 gi|57641534|ref|YP_184012.1| - 0.062 12.5 2.8 0.23 10.6 0.1 2.2 1 1 1 2 2 2 0 Phi-29 DNA terminal protein GP3 DUF2730 PF10805.3 gi|57641534|ref|YP_184012.1| - 0.095 12.4 3.0 0.23 11.2 2.1 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF2730) Borrelia_P83 PF05262.6 gi|57641534|ref|YP_184012.1| - 0.12 10.5 7.4 0.14 10.4 5.1 1.2 1 0 0 1 1 1 0 Borrelia P83/100 protein Exonuc_VII_L PF02601.10 gi|57641534|ref|YP_184012.1| - 0.16 11.1 4.3 0.19 10.9 2.9 1.2 1 0 0 1 1 1 0 Exonuclease VII, large subunit GerPC PF10737.4 gi|57641534|ref|YP_184012.1| - 0.8 9.4 6.5 1.6 8.4 1.6 2.5 1 1 1 2 2 2 0 Spore germination protein GerPC Rotamase_2 PF13145.1 gi|57641534|ref|YP_184012.1| - 2.2 8.9 10.2 39 4.9 6.8 2.3 1 1 0 1 1 1 0 PPIC-type PPIASE domain DUF760 PF05542.6 gi|57641534|ref|YP_184012.1| - 2.7 8.2 4.7 4.5 7.5 2.1 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF760) AAA_13 PF13166.1 gi|57641534|ref|YP_184012.1| - 3.8 5.8 10.4 5 5.4 7.2 1.1 1 0 0 1 1 1 0 AAA domain HrpE PF06188.7 gi|57641534|ref|YP_184012.1| - 4.5 6.9 14.7 8.8 6.0 10.1 1.5 1 1 0 1 1 1 0 HrpE/YscL/FliH and V-type ATPase subunit E VASP_tetra PF08776.6 gi|57641534|ref|YP_184012.1| - 5.3 6.4 9.8 0.84 8.9 0.7 2.7 2 1 0 2 2 2 0 VASP tetramerisation domain vATP-synt_AC39 PF01992.11 gi|57641535|ref|YP_184013.1| - 1.1e-102 343.6 9.5 1.2e-102 343.4 6.6 1.0 1 0 0 1 1 1 1 ATP synthase (C/AC39) subunit ATP-synt_F PF01990.12 gi|57641536|ref|YP_184014.1| - 9.1e-21 74.0 0.2 1.3e-20 73.5 0.2 1.2 1 0 0 1 1 1 1 ATP synthase (F/14-kDa) subunit ATP-synt_ab PF00006.20 gi|57641537|ref|YP_184015.1| - 5e-97 323.5 0.0 7.6e-97 323.0 0.0 1.3 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_C PF00306.22 gi|57641537|ref|YP_184015.1| - 1.3e-18 67.4 0.5 2.4e-18 66.6 0.3 1.4 1 0 0 1 1 1 1 ATP synthase alpha/beta chain, C terminal domain ATP-synt_ab_N PF02874.18 gi|57641537|ref|YP_184015.1| - 1.6e-14 53.8 4.7 5.8e-14 52.0 3.0 2.2 2 0 0 2 2 2 1 ATP synthase alpha/beta family, beta-barrel domain AAA_22 PF13401.1 gi|57641537|ref|YP_184015.1| - 0.036 14.2 0.0 0.16 12.1 0.0 2.0 2 0 0 2 2 2 0 AAA domain ATP-synt_ab PF00006.20 gi|57641538|ref|YP_184016.1| - 3.4e-62 209.7 0.0 4.3e-62 209.4 0.0 1.1 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_C PF00306.22 gi|57641538|ref|YP_184016.1| - 8e-18 64.9 0.3 1.9e-17 63.7 0.2 1.6 1 0 0 1 1 1 1 ATP synthase alpha/beta chain, C terminal domain ATP-synt_ab_N PF02874.18 gi|57641538|ref|YP_184016.1| - 1.9e-11 43.9 2.0 1.9e-11 43.9 1.4 1.8 2 0 0 2 2 2 1 ATP synthase alpha/beta family, beta-barrel domain HAS-barrel PF09378.5 gi|57641538|ref|YP_184016.1| - 1.9e-06 27.6 0.9 5.5e-06 26.2 0.6 1.9 1 0 0 1 1 1 1 HAS barrel domain ATP-synt_D PF01813.12 gi|57641539|ref|YP_184017.1| - 1.3e-69 233.6 14.2 1.5e-69 233.5 9.9 1.0 1 0 0 1 1 1 1 ATP synthase subunit D DUF4527 PF15030.1 gi|57641539|ref|YP_184017.1| - 0.04 13.2 0.5 0.062 12.5 0.3 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF4527) GAS PF13851.1 gi|57641539|ref|YP_184017.1| - 0.32 10.1 8.7 0.19 10.9 0.6 2.3 2 1 0 2 2 2 0 Growth-arrest specific micro-tubule binding Lactamase_B PF00753.22 gi|57641540|ref|YP_184018.1| - 4.3e-26 91.7 0.4 4.3e-26 91.7 0.3 1.4 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily Imm19 PF15567.1 gi|57641540|ref|YP_184018.1| - 0.14 12.1 0.0 0.94 9.5 0.0 2.1 1 1 1 2 2 2 0 Immunity protein 19 MCPsignal PF00015.16 gi|57641541|ref|YP_184019.1| - 7.6e-30 104.0 9.8 7.6e-30 104.0 6.8 2.2 1 1 1 2 2 2 1 Methyl-accepting chemotaxis protein (MCP) signalling domain Dor1 PF04124.7 gi|57641541|ref|YP_184019.1| - 0.00097 17.6 7.5 0.024 13.1 0.6 2.9 1 1 2 3 3 3 1 Dor1-like family BAR PF03114.13 gi|57641541|ref|YP_184019.1| - 0.0099 15.4 5.9 0.82 9.1 0.1 3.4 2 2 1 3 3 3 1 BAR domain AGT PF11440.3 gi|57641541|ref|YP_184019.1| - 0.022 13.6 0.0 0.035 12.9 0.0 1.2 1 0 0 1 1 1 0 DNA alpha-glucosyltransferase Syntaxin_2 PF14523.1 gi|57641541|ref|YP_184019.1| - 0.027 14.4 1.2 0.027 14.4 0.8 3.3 1 1 3 4 4 4 0 Syntaxin-like protein Streptin-Immun PF11083.3 gi|57641541|ref|YP_184019.1| - 0.031 14.2 10.3 0.75 9.8 0.5 3.2 2 2 0 3 3 3 0 Lantibiotic streptin immunity protein DASH_Dad1 PF08649.5 gi|57641541|ref|YP_184019.1| - 0.062 12.9 10.5 5.1 6.8 0.1 4.7 4 1 0 4 4 4 0 DASH complex subunit Dad1 DUF1664 PF07889.7 gi|57641541|ref|YP_184019.1| - 0.069 12.9 9.2 2.5 7.9 0.1 2.9 2 2 0 2 2 2 0 Protein of unknown function (DUF1664) DUF3407 PF11887.3 gi|57641541|ref|YP_184019.1| - 0.089 12.0 0.3 3.4 6.8 0.0 2.4 1 1 0 2 2 2 0 Protein of unknown function (DUF3407) LOH1CR12 PF10158.4 gi|57641541|ref|YP_184019.1| - 0.11 12.2 8.8 1.1 9.0 0.1 3.5 1 1 3 4 4 4 0 Tumour suppressor protein DASH_Dam1 PF08653.5 gi|57641541|ref|YP_184019.1| - 0.12 12.2 7.7 54 3.6 0.1 4.6 3 1 1 4 4 4 0 DASH complex subunit Dam1 DUF2935 PF11155.3 gi|57641541|ref|YP_184019.1| - 0.16 12.1 7.4 0.9 9.6 2.4 3.0 1 1 1 2 2 2 0 Domain of unknown function (DUF2935) Sec34 PF04136.10 gi|57641541|ref|YP_184019.1| - 0.16 11.6 7.8 1.4 8.6 1.0 2.6 2 2 0 2 2 2 0 Sec34-like family ArdA PF07275.6 gi|57641541|ref|YP_184019.1| - 0.21 11.7 4.6 1.3 9.2 0.1 2.7 1 1 0 2 2 2 0 Antirestriction protein (ArdA) HsbA PF12296.3 gi|57641541|ref|YP_184019.1| - 0.23 11.3 3.6 0.76 9.6 0.0 3.3 3 2 0 3 3 3 0 Hydrophobic surface binding protein A Syntaxin PF00804.20 gi|57641541|ref|YP_184019.1| - 0.26 11.4 15.9 2.2 8.4 4.2 3.8 1 1 1 2 2 2 0 Syntaxin NEP PF10167.4 gi|57641541|ref|YP_184019.1| - 0.3 10.7 6.9 0.1 12.2 0.6 3.0 1 1 2 3 3 3 0 Uncharacterised conserved protein Poty_PP PF08440.5 gi|57641541|ref|YP_184019.1| - 0.41 9.6 7.4 0.44 9.5 0.6 2.2 2 0 0 2 2 2 0 Potyviridae polyprotein COG5 PF10392.4 gi|57641541|ref|YP_184019.1| - 0.46 10.4 7.3 9.1 6.2 0.3 3.3 2 2 2 4 4 4 0 Golgi transport complex subunit 5 UBN2 PF14223.1 gi|57641541|ref|YP_184019.1| - 0.65 9.8 10.8 4.5 7.0 1.8 3.0 2 1 0 2 2 2 0 gag-polypeptide of LTR copia-type WXG100 PF06013.7 gi|57641541|ref|YP_184019.1| - 0.92 9.5 8.4 14 5.7 0.1 4.5 2 2 1 4 4 4 0 Proteins of 100 residues with WXG MitMem_reg PF13012.1 gi|57641541|ref|YP_184019.1| - 1.7 8.7 7.6 3.6 7.7 0.3 3.1 2 1 1 3 3 3 0 Maintenance of mitochondrial structure and function AATF-Che1 PF13339.1 gi|57641541|ref|YP_184019.1| - 2 8.5 6.2 2.5 8.2 1.1 2.8 2 2 0 2 2 2 0 Apoptosis antagonizing transcription factor DUF310 PF03750.8 gi|57641541|ref|YP_184019.1| - 2.8 8.1 8.8 0.86 9.8 0.9 2.7 2 2 0 2 2 2 0 Protein of unknown function (DUF310) YlqD PF11068.3 gi|57641541|ref|YP_184019.1| - 2.8 7.9 10.1 11 6.0 0.3 2.8 2 1 1 3 3 3 0 YlqD protein DUF4252 PF14060.1 gi|57641541|ref|YP_184019.1| - 3.2 7.2 10.6 0.27 10.7 0.7 2.8 2 2 1 3 3 3 0 Domain of unknown function (DUF4252) Peptidase_C6 PF00851.13 gi|57641541|ref|YP_184019.1| - 4.6 5.7 7.5 1.5 7.3 2.1 2.0 1 1 0 2 2 2 0 Helper component proteinase COG2 PF06148.6 gi|57641541|ref|YP_184019.1| - 4.9 7.0 10.9 3.8 7.3 0.5 3.5 2 2 2 4 4 4 0 COG (conserved oligomeric Golgi) complex component, COG2 DUF3510 PF12022.3 gi|57641541|ref|YP_184019.1| - 6.3 6.9 7.5 5.4 7.1 0.2 3.4 1 1 1 3 3 3 0 Domain of unknown function (DUF3510) tRNA_SAD PF07973.9 gi|57641542|ref|YP_184020.1| - 8e-12 44.8 1.7 1.2e-11 44.3 0.3 2.0 2 0 0 2 2 2 1 Threonyl and Alanyl tRNA synthetase second additional domain tRNA-synt_2c PF01411.14 gi|57641542|ref|YP_184020.1| - 1.4e-11 43.3 0.0 2.3e-11 42.7 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetases class II (A) DHHA1 PF02272.14 gi|57641542|ref|YP_184020.1| - 1.1e-07 31.3 0.0 3.6e-07 29.7 0.0 1.9 1 0 0 1 1 1 1 DHHA1 domain bZIP_1 PF00170.16 gi|57641542|ref|YP_184020.1| - 0.072 13.0 3.7 0.16 11.9 2.6 1.6 1 0 0 1 1 1 0 bZIP transcription factor DivIC PF04977.10 gi|57641542|ref|YP_184020.1| - 0.11 11.9 1.8 0.28 10.6 1.3 1.6 1 0 0 1 1 1 0 Septum formation initiator DUF257 PF03192.8 gi|57641543|ref|YP_184021.1| - 5e-67 225.2 0.4 5.9e-67 225.0 0.3 1.0 1 0 0 1 1 1 1 Pyrococcus protein of unknown function, DUF257 DUF257 PF03192.8 gi|57641544|ref|YP_184022.1| - 1.2e-60 204.4 0.7 1.4e-60 204.1 0.5 1.0 1 0 0 1 1 1 1 Pyrococcus protein of unknown function, DUF257 MMS22L_N PF14910.1 gi|57641544|ref|YP_184022.1| - 0.0092 14.2 0.0 0.011 14.0 0.0 1.0 1 0 0 1 1 1 1 S-phase genomic integrity recombination mediator, N-terminal GTP_EFTU_D4 PF14578.1 gi|57641545|ref|YP_184023.1| - 1.5e-36 123.9 2.3 1.8e-36 123.6 1.6 1.1 1 0 0 1 1 1 1 Elongation factor Tu domain 4 GTP_EFTU_D2 PF03144.20 gi|57641545|ref|YP_184023.1| - 0.018 15.1 0.2 0.037 14.1 0.1 1.7 1 0 0 1 1 1 0 Elongation factor Tu domain 2 TatD_DNase PF01026.16 gi|57641546|ref|YP_184024.1| - 2.7e-35 121.8 0.1 3.1e-35 121.5 0.1 1.0 1 0 0 1 1 1 1 TatD related DNase AP_endonuc_2 PF01261.19 gi|57641546|ref|YP_184024.1| - 0.039 13.2 0.2 0.13 11.5 0.1 1.8 1 1 0 1 1 1 0 Xylose isomerase-like TIM barrel Fer4_20 PF14691.1 gi|57641547|ref|YP_184025.1| - 1.3e-26 92.3 2.4 5.6e-21 74.2 0.0 2.7 2 0 0 2 2 2 2 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Pyr_redox_2 PF07992.9 gi|57641547|ref|YP_184025.1| - 1.4e-20 74.0 5.3 5.5e-19 68.8 3.7 4.3 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|57641547|ref|YP_184025.1| - 4.9e-18 65.2 9.3 2.2e-10 40.7 0.7 4.0 3 1 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|57641547|ref|YP_184025.1| - 1.7e-14 54.3 0.2 1.6e-07 31.6 0.0 3.6 3 1 0 4 4 4 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|57641547|ref|YP_184025.1| - 7.5e-12 45.1 0.0 6.2e-10 38.9 0.0 3.1 3 0 0 3 3 3 1 NAD(P)-binding Rossmann-like domain Fer2_4 PF13510.1 gi|57641547|ref|YP_184025.1| - 2.7e-09 36.7 0.0 1.3e-08 34.4 0.0 2.3 3 0 0 3 3 1 1 2Fe-2S iron-sulfur cluster binding domain DAO PF01266.19 gi|57641547|ref|YP_184025.1| - 8.1e-09 34.8 2.7 3.5e-05 22.8 0.1 3.5 3 0 0 3 3 3 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|57641547|ref|YP_184025.1| - 5.2e-08 32.1 2.4 0.00021 20.2 0.0 3.2 3 0 0 3 3 3 1 FAD binding domain NAD_binding_7 PF13241.1 gi|57641547|ref|YP_184025.1| - 8.4e-08 32.4 0.1 0.0002 21.5 0.0 2.7 2 0 0 2 2 2 2 Putative NAD(P)-binding FAD_oxidored PF12831.2 gi|57641547|ref|YP_184025.1| - 4.4e-07 29.3 2.6 4.8e-05 22.6 0.0 2.3 2 0 0 2 2 2 1 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|57641547|ref|YP_184025.1| - 8.3e-07 27.8 1.4 2.3e-05 23.0 0.1 2.3 2 0 0 2 2 2 1 HI0933-like protein Thi4 PF01946.12 gi|57641547|ref|YP_184025.1| - 8.5e-06 25.0 0.9 0.00012 21.2 0.0 2.2 2 0 0 2 2 2 1 Thi4 family GIDA PF01134.17 gi|57641547|ref|YP_184025.1| - 1.1e-05 24.5 2.1 0.012 14.5 0.2 3.2 3 0 0 3 3 3 1 Glucose inhibited division protein A AlaDh_PNT_C PF01262.16 gi|57641547|ref|YP_184025.1| - 3.8e-05 23.3 0.6 0.073 12.6 0.1 2.3 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_10 PF13460.1 gi|57641547|ref|YP_184025.1| - 4.1e-05 23.6 0.6 0.33 10.9 0.1 3.2 3 0 0 3 3 3 2 NADH(P)-binding Amino_oxidase PF01593.19 gi|57641547|ref|YP_184025.1| - 0.00012 21.3 0.0 0.00039 19.6 0.0 1.9 3 0 0 3 3 2 1 Flavin containing amine oxidoreductase XdhC_C PF13478.1 gi|57641547|ref|YP_184025.1| - 0.00029 21.1 0.0 0.039 14.2 0.0 2.4 2 0 0 2 2 2 1 XdhC Rossmann domain 2-Hacid_dh_C PF02826.14 gi|57641547|ref|YP_184025.1| - 0.00031 19.9 0.3 0.18 10.9 0.1 3.0 2 1 1 3 3 3 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain PALP PF00291.20 gi|57641547|ref|YP_184025.1| - 0.00045 19.5 0.0 0.54 9.4 0.0 2.4 2 0 0 2 2 2 2 Pyridoxal-phosphate dependent enzyme TrkA_N PF02254.13 gi|57641547|ref|YP_184025.1| - 0.00046 20.1 0.8 1.2 9.1 0.1 3.4 3 0 0 3 3 3 1 TrkA-N domain Oxidored_nitro PF00148.14 gi|57641547|ref|YP_184025.1| - 0.00065 18.4 0.2 0.3 9.6 0.1 3.1 3 0 0 3 3 3 1 Nitrogenase component 1 type Oxidoreductase CPSase_L_chain PF00289.17 gi|57641547|ref|YP_184025.1| - 0.00066 19.7 0.1 0.066 13.3 0.0 2.6 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, N-terminal domain FMO-like PF00743.14 gi|57641547|ref|YP_184025.1| - 0.00078 17.7 0.0 0.59 8.2 0.0 2.1 2 0 0 2 2 2 2 Flavin-binding monooxygenase-like Shikimate_DH PF01488.15 gi|57641547|ref|YP_184025.1| - 0.0012 18.9 0.2 0.35 10.9 0.1 2.4 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase FAD_binding_3 PF01494.14 gi|57641547|ref|YP_184025.1| - 0.0023 17.0 2.6 0.023 13.7 0.1 2.2 2 0 0 2 2 2 1 FAD binding domain F420_oxidored PF03807.12 gi|57641547|ref|YP_184025.1| - 0.0062 16.9 0.9 4.4 7.8 0.1 3.5 2 1 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent K_oxygenase PF13434.1 gi|57641547|ref|YP_184025.1| - 0.0068 15.3 0.0 0.11 11.4 0.0 2.2 2 0 0 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) NADH-G_4Fe-4S_3 PF10588.4 gi|57641547|ref|YP_184025.1| - 0.0072 15.5 0.7 0.16 11.1 0.0 2.7 2 0 0 2 2 2 1 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Molybdop_Fe4S4 PF04879.11 gi|57641547|ref|YP_184025.1| - 0.0083 15.9 1.4 0.0083 15.9 1.0 2.3 2 0 0 2 2 2 1 Molybdopterin oxidoreductase Fe4S4 domain 3HCDH_N PF02737.13 gi|57641547|ref|YP_184025.1| - 0.0092 15.6 1.0 2.9 7.5 0.0 2.4 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Lycopene_cycl PF05834.7 gi|57641547|ref|YP_184025.1| - 0.013 14.4 0.5 0.16 10.8 0.1 2.1 2 0 0 2 2 2 0 Lycopene cyclase protein UDPG_MGDP_dh_N PF03721.9 gi|57641547|ref|YP_184025.1| - 0.014 14.7 0.1 0.039 13.3 0.1 1.9 1 1 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Fer4_15 PF13459.1 gi|57641547|ref|YP_184025.1| - 0.019 15.5 3.2 0.056 14.0 0.1 3.5 3 1 0 3 3 2 0 4Fe-4S single cluster domain Fer4 PF00037.22 gi|57641547|ref|YP_184025.1| - 0.024 14.2 0.5 0.024 14.2 0.4 4.8 5 0 0 5 5 4 0 4Fe-4S binding domain NAD_Gly3P_dh_N PF01210.18 gi|57641547|ref|YP_184025.1| - 0.027 14.1 0.2 0.31 10.7 0.0 2.3 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus YjeF_N PF03853.10 gi|57641547|ref|YP_184025.1| - 0.052 13.1 0.1 11 5.5 0.0 2.3 2 0 0 2 2 2 0 YjeF-related protein N-terminus DJ-1_PfpI PF01965.19 gi|57641547|ref|YP_184025.1| - 0.062 12.7 0.1 0.54 9.7 0.0 2.6 2 1 1 3 3 3 0 DJ-1/PfpI family PA PF02225.17 gi|57641547|ref|YP_184025.1| - 0.096 12.3 0.1 17 5.1 0.0 2.5 2 0 0 2 2 2 0 PA domain NAD_binding_9 PF13454.1 gi|57641547|ref|YP_184025.1| - 0.12 12.1 0.0 1.4 8.6 0.0 2.4 2 0 0 2 2 2 0 FAD-NAD(P)-binding Glyco_transf_4 PF13439.1 gi|57641547|ref|YP_184025.1| - 0.18 11.5 0.0 30 4.2 0.0 2.6 2 0 0 2 2 2 0 Glycosyltransferase Family 4 Trp_halogenase PF04820.9 gi|57641547|ref|YP_184025.1| - 1.6 7.2 2.4 0.81 8.2 0.1 1.6 2 0 0 2 2 2 0 Tryptophan halogenase TPR_3 PF07720.7 gi|57641547|ref|YP_184025.1| - 3.8 7.4 5.8 4.7 7.1 0.0 3.3 4 0 0 4 4 3 0 Tetratricopeptide repeat Complex1_51K PF01512.12 gi|57641548|ref|YP_184026.1| - 1.8e-51 173.8 0.0 5.5e-51 172.2 0.0 1.8 2 0 0 2 2 2 1 Respiratory-chain NADH dehydrogenase 51 Kd subunit NADH_4Fe-4S PF10589.4 gi|57641548|ref|YP_184026.1| - 1.8e-19 68.5 0.2 1.8e-19 68.5 0.1 2.8 3 0 0 3 3 2 1 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Fer4 PF00037.22 gi|57641548|ref|YP_184026.1| - 4.7e-12 44.9 14.2 1.1e-07 31.0 1.5 3.9 4 0 0 4 4 4 2 4Fe-4S binding domain SLBB PF10531.4 gi|57641548|ref|YP_184026.1| - 1.4e-10 40.8 0.6 2.9e-10 39.9 0.4 1.6 1 0 0 1 1 1 1 SLBB domain Fer4_10 PF13237.1 gi|57641548|ref|YP_184026.1| - 1.8e-08 34.0 9.8 1.8e-08 34.0 6.8 2.7 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|57641548|ref|YP_184026.1| - 1.2e-07 31.9 11.6 1.2e-07 31.9 8.0 2.9 3 0 0 3 3 2 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|57641548|ref|YP_184026.1| - 2.2e-07 30.3 22.8 0.00014 21.6 1.4 4.4 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|57641548|ref|YP_184026.1| - 2.2e-06 27.4 23.9 0.00045 20.0 1.0 4.1 4 0 0 4 4 4 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|57641548|ref|YP_184026.1| - 2.8e-06 26.9 15.6 0.00011 21.8 2.3 4.2 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|57641548|ref|YP_184026.1| - 5.8e-05 23.2 14.2 5.8e-05 23.2 9.8 3.4 3 1 1 4 4 3 2 4Fe-4S dicluster domain 2Fe-2S_thioredx PF01257.14 gi|57641548|ref|YP_184026.1| - 0.00019 21.0 0.1 0.0009 18.8 0.0 2.0 2 0 0 2 2 2 1 Thioredoxin-like [2Fe-2S] ferredoxin Fer4_8 PF13183.1 gi|57641548|ref|YP_184026.1| - 0.0024 17.8 17.1 0.035 14.1 0.9 3.0 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|57641548|ref|YP_184026.1| - 0.011 16.5 1.7 0.011 16.5 1.2 3.9 4 0 0 4 4 4 0 4Fe-4S double cluster binding domain Fer4_18 PF13746.1 gi|57641548|ref|YP_184026.1| - 0.012 16.0 12.5 0.45 10.9 1.4 3.4 3 0 0 3 3 3 0 4Fe-4S dicluster domain Suc_Fer-like PF06999.7 gi|57641548|ref|YP_184026.1| - 0.014 15.4 0.1 0.025 14.6 0.1 1.3 1 0 0 1 1 1 0 Sucrase/ferredoxin-like Fer4_4 PF12800.2 gi|57641548|ref|YP_184026.1| - 0.029 14.7 21.9 0.11 12.8 2.5 3.5 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_13 PF13370.1 gi|57641548|ref|YP_184026.1| - 0.6 10.5 19.8 0.18 12.1 1.7 3.5 3 0 0 3 3 3 0 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|57641548|ref|YP_184026.1| - 2 8.8 20.9 53 4.2 9.2 3.4 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|57641548|ref|YP_184026.1| - 2.4 8.8 17.1 0.47 11.0 1.1 3.4 3 0 0 3 3 3 0 4Fe-4S single cluster domain 2Fe-2S_thioredx PF01257.14 gi|57641549|ref|YP_184027.1| - 5.4e-55 184.9 0.0 6.1e-55 184.7 0.0 1.0 1 0 0 1 1 1 1 Thioredoxin-like [2Fe-2S] ferredoxin Sigma70_r4 PF04545.11 gi|57641549|ref|YP_184027.1| - 0.046 13.0 0.0 0.11 11.8 0.0 1.7 1 0 0 1 1 1 0 Sigma-70, region 4 DUF1636 PF07845.6 gi|57641549|ref|YP_184027.1| - 0.064 13.4 0.5 0.1 12.8 0.4 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1636) HTH_17 PF12728.2 gi|57641549|ref|YP_184027.1| - 0.11 12.8 0.0 0.58 10.4 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain RTC PF01137.16 gi|57641550|ref|YP_184028.1| - 5.3e-85 283.8 0.0 6.1e-85 283.6 0.0 1.0 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase RTC_insert PF05189.8 gi|57641550|ref|YP_184028.1| - 3.9e-28 97.4 0.2 6e-28 96.8 0.1 1.3 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase (RTC), insert domain BCNT PF07572.7 gi|57641551|ref|YP_184029.1| - 0.029 14.2 0.1 0.062 13.2 0.0 1.6 1 0 0 1 1 1 0 Bucentaur or craniofacial development DUF4315 PF14193.1 gi|57641551|ref|YP_184029.1| - 0.086 12.7 0.6 0.16 11.8 0.4 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4315) Metallophos_2 PF12850.2 gi|57641553|ref|YP_184031.1| - 7.9e-29 100.4 0.2 9.3e-29 100.2 0.1 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|57641553|ref|YP_184031.1| - 4.8e-07 29.3 1.1 2e-05 24.0 0.7 2.2 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_3 PF14582.1 gi|57641553|ref|YP_184031.1| - 1.9e-05 23.9 1.1 0.011 14.8 0.3 2.1 1 1 1 2 2 2 2 Metallophosphoesterase, calcineurin superfamily Sld5 PF05916.6 gi|57641554|ref|YP_184032.1| - 3.2e-07 30.5 1.0 4.6e-07 30.0 0.7 1.2 1 0 0 1 1 1 1 GINS complex protein Med18 PF09637.5 gi|57641554|ref|YP_184032.1| - 0.097 12.2 0.0 0.11 11.9 0.0 1.1 1 0 0 1 1 1 0 Med18 protein MCM PF00493.18 gi|57641555|ref|YP_184033.1| - 1.3e-126 421.8 1.6 4.2e-65 219.7 0.1 3.2 3 0 0 3 3 3 3 MCM2/3/5 family MCM_N PF14551.1 gi|57641555|ref|YP_184033.1| - 4.1e-22 78.9 0.1 1.8e-21 76.8 0.0 2.2 1 0 0 1 1 1 1 MCM N-terminal domain Intein_splicing PF14890.1 gi|57641555|ref|YP_184033.1| - 8.3e-10 38.0 6.9 0.00022 20.2 0.2 3.6 2 1 0 3 3 3 3 Intein splicing domain AAA_5 PF07728.9 gi|57641555|ref|YP_184033.1| - 0.0002 21.0 0.0 0.025 14.3 0.0 2.8 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) Zn-ribbon_8 PF09723.5 gi|57641555|ref|YP_184033.1| - 0.013 15.4 0.4 0.026 14.4 0.3 1.5 1 0 0 1 1 1 0 Zinc ribbon domain HypA PF01155.14 gi|57641555|ref|YP_184033.1| - 0.025 14.2 0.1 0.063 12.9 0.0 1.6 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Hint PF01079.15 gi|57641555|ref|YP_184033.1| - 0.028 13.6 0.0 0.055 12.6 0.0 1.4 1 0 0 1 1 1 0 Hint module Sigma54_activat PF00158.21 gi|57641555|ref|YP_184033.1| - 0.031 13.7 0.0 0.94 8.9 0.0 2.5 2 0 0 2 2 2 0 Sigma-54 interaction domain TPR_2 PF07719.12 gi|57641555|ref|YP_184033.1| - 0.07 13.0 1.0 6.2 6.9 0.2 3.1 2 0 0 2 2 2 0 Tetratricopeptide repeat Mg_chelatase PF01078.16 gi|57641555|ref|YP_184033.1| - 0.11 11.6 0.1 7.7 5.6 0.0 3.0 3 0 0 3 3 3 0 Magnesium chelatase, subunit ChlI AAA_16 PF13191.1 gi|57641555|ref|YP_184033.1| - 0.15 11.9 2.0 0.63 9.9 0.0 3.0 3 0 0 3 3 3 0 AAA ATPase domain Membralin PF09746.4 gi|57641555|ref|YP_184033.1| - 0.16 11.0 0.1 0.35 9.8 0.1 1.5 1 0 0 1 1 1 0 Tumour-associated protein AAA_22 PF13401.1 gi|57641555|ref|YP_184033.1| - 0.26 11.4 0.0 0.26 11.4 0.0 3.5 5 0 0 5 5 5 0 AAA domain eIF-5_eIF-2B PF01873.12 gi|57641556|ref|YP_184034.1| - 6.7e-45 151.7 0.0 7.9e-45 151.5 0.0 1.0 1 0 0 1 1 1 1 Domain found in IF2B/IF5 Lar_restr_allev PF14354.1 gi|57641556|ref|YP_184034.1| - 0.00054 20.2 0.7 0.00094 19.4 0.5 1.3 1 0 0 1 1 1 1 Restriction alleviation protein Lar FdhE PF04216.7 gi|57641556|ref|YP_184034.1| - 0.032 13.9 0.1 0.033 13.9 0.1 1.4 1 1 0 1 1 1 0 Protein involved in formate dehydrogenase formation Zn_Tnp_IS1595 PF12760.2 gi|57641556|ref|YP_184034.1| - 0.032 14.0 0.5 0.057 13.2 0.4 1.4 1 0 0 1 1 1 0 Transposase zinc-ribbon domain zf-FPG_IleRS PF06827.9 gi|57641556|ref|YP_184034.1| - 0.044 13.4 0.3 0.44 10.2 0.3 2.2 1 1 1 2 2 2 0 Zinc finger found in FPG and IleRS Zn-ribbon_8 PF09723.5 gi|57641556|ref|YP_184034.1| - 0.048 13.6 0.8 2.7 8.0 0.0 2.5 2 0 0 2 2 2 0 Zinc ribbon domain zinc_ribbon_2 PF13240.1 gi|57641556|ref|YP_184034.1| - 0.055 12.9 1.5 5.1 6.7 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|57641556|ref|YP_184034.1| - 0.059 12.5 4.3 0.29 10.3 2.9 2.0 1 1 0 1 1 1 0 zinc-ribbon domain Elf1 PF05129.8 gi|57641556|ref|YP_184034.1| - 0.086 12.5 0.4 0.086 12.5 0.2 1.6 2 0 0 2 2 2 0 Transcription elongation factor Elf1 like zf-dskA_traR PF01258.12 gi|57641556|ref|YP_184034.1| - 0.15 11.7 1.0 3 7.6 0.1 2.4 2 0 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger OrfB_Zn_ribbon PF07282.6 gi|57641556|ref|YP_184034.1| - 0.16 11.6 0.4 0.33 10.6 0.3 1.5 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zf-TFIIB PF13453.1 gi|57641556|ref|YP_184034.1| - 0.18 11.0 0.6 0.35 10.0 0.4 1.5 1 0 0 1 1 1 0 Transcription factor zinc-finger Cys_rich_KTR PF14205.1 gi|57641556|ref|YP_184034.1| - 0.34 10.3 3.6 2.3 7.7 1.5 2.4 2 1 0 2 2 2 0 Cysteine-rich KTR zf-NADH-PPase PF09297.6 gi|57641556|ref|YP_184034.1| - 0.87 9.1 3.2 7.2 6.2 2.3 2.1 1 1 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain DUF35_N PF12172.3 gi|57641556|ref|YP_184034.1| - 1 9.3 4.1 4.5 7.3 0.1 2.3 1 1 1 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Prim_Zn_Ribbon PF08273.7 gi|57641556|ref|YP_184034.1| - 1 9.4 3.4 4.7 7.3 0.3 2.2 2 0 0 2 2 2 0 Zinc-binding domain of primase-helicase Carboxyl_trans PF01039.17 gi|57641557|ref|YP_184035.1| - 1.2e-205 683.5 0.4 1.4e-205 683.3 0.2 1.0 1 0 0 1 1 1 1 Carboxyl transferase domain MdcE PF06833.6 gi|57641557|ref|YP_184035.1| - 3.6e-07 29.6 0.0 7.8e-07 28.5 0.0 1.5 1 0 0 1 1 1 1 Malonate decarboxylase gamma subunit (MdcE) OAD_gamma PF04277.8 gi|57641558|ref|YP_184036.1| - 3.6e-18 65.6 0.1 4.4e-18 65.4 0.1 1.1 1 0 0 1 1 1 1 Oxaloacetate decarboxylase, gamma chain DUF912 PF06024.7 gi|57641558|ref|YP_184036.1| - 0.0025 17.8 0.1 0.0039 17.2 0.1 1.3 1 0 0 1 1 1 1 Nucleopolyhedrovirus protein of unknown function (DUF912) Sensor PF13796.1 gi|57641558|ref|YP_184036.1| - 0.025 14.1 2.1 0.033 13.7 1.4 1.2 1 0 0 1 1 1 0 Putative sensor Glycophorin_A PF01102.13 gi|57641558|ref|YP_184036.1| - 0.081 12.6 0.4 0.15 11.8 0.3 1.5 1 1 0 1 1 1 0 Glycophorin A DUF1469 PF07332.6 gi|57641558|ref|YP_184036.1| - 0.21 11.3 1.5 0.9 9.2 0.2 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1469) DUF3040 PF11239.3 gi|57641558|ref|YP_184036.1| - 0.24 11.4 1.1 0.61 10.1 0.8 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3040) Biotin_lipoyl PF00364.17 gi|57641559|ref|YP_184037.1| - 3.6e-26 90.6 3.7 7.3e-26 89.6 2.6 1.5 1 0 0 1 1 1 1 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.1 gi|57641559|ref|YP_184037.1| - 6e-17 61.0 0.4 2.7e-07 30.1 0.0 2.4 1 1 1 2 2 2 2 Biotin-lipoyl like HlyD PF00529.15 gi|57641559|ref|YP_184037.1| - 8.5e-10 38.4 0.5 0.00027 20.3 0.1 2.3 1 1 1 2 2 2 2 HlyD family secretion protein HlyD_2 PF12700.2 gi|57641559|ref|YP_184037.1| - 7.3e-09 35.2 0.3 0.00013 21.2 0.0 2.2 1 1 1 2 2 2 2 HlyD family secretion protein HlyD_3 PF13437.1 gi|57641559|ref|YP_184037.1| - 8.5e-09 35.7 0.5 0.00025 21.3 0.0 2.7 3 0 0 3 3 3 2 HlyD family secretion protein PTS_EIIA_1 PF00358.15 gi|57641559|ref|YP_184037.1| - 7.1e-05 22.3 0.3 0.042 13.4 0.0 2.5 2 1 1 3 3 3 2 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 RnfC_N PF13375.1 gi|57641559|ref|YP_184037.1| - 0.00063 19.4 0.3 0.019 14.6 0.0 2.3 1 1 1 2 2 2 2 RnfC Barrel sandwich hybrid domain NQRA PF05896.6 gi|57641559|ref|YP_184037.1| - 0.0015 17.7 0.4 0.061 12.4 0.2 2.2 1 1 1 2 2 2 2 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) GCV_H PF01597.14 gi|57641559|ref|YP_184037.1| - 0.0065 16.1 0.3 0.013 15.1 0.2 1.5 1 0 0 1 1 1 1 Glycine cleavage H-protein PYNP_C PF07831.8 gi|57641559|ref|YP_184037.1| - 0.016 14.6 0.7 2.3 7.7 0.1 2.3 2 0 0 2 2 2 0 Pyrimidine nucleoside phosphorylase C-terminal domain QRPTase_N PF02749.11 gi|57641559|ref|YP_184037.1| - 0.077 12.8 0.1 14 5.6 0.0 2.4 1 1 1 2 2 2 0 Quinolinate phosphoribosyl transferase, N-terminal domain Peptidase_M23 PF01551.17 gi|57641559|ref|YP_184037.1| - 0.092 12.8 2.8 39 4.3 0.1 3.4 2 1 0 2 2 2 0 Peptidase family M23 NUDE_C PF04880.8 gi|57641559|ref|YP_184037.1| - 0.3 11.4 1.9 0.41 10.9 1.3 1.3 1 0 0 1 1 1 0 NUDE protein, C-terminal conserved region OAD_beta PF03977.8 gi|57641560|ref|YP_184038.1| - 6.3e-175 581.1 27.1 7.2e-175 580.9 18.8 1.0 1 0 0 1 1 1 1 Na+-transporting oxaloacetate decarboxylase beta subunit CBS PF00571.23 gi|57641561|ref|YP_184039.1| - 5.4e-51 170.1 14.6 2e-13 49.8 0.6 4.2 4 0 0 4 4 4 4 CBS domain PRC PF05239.11 gi|57641561|ref|YP_184039.1| - 0.00097 18.9 6.0 0.17 11.7 0.0 3.6 3 1 0 3 3 3 1 PRC-barrel domain GAF_2 PF13185.1 gi|57641561|ref|YP_184039.1| - 0.013 15.9 0.2 16 5.9 0.0 3.1 2 1 1 3 3 3 0 GAF domain Acetyltransf_4 PF13420.1 gi|57641561|ref|YP_184039.1| - 0.11 12.3 0.0 0.52 10.2 0.0 2.0 1 1 1 2 2 2 0 Acetyltransferase (GNAT) domain Cache_3 PF14827.1 gi|57641561|ref|YP_184039.1| - 0.15 11.9 5.8 10 6.0 0.2 3.7 3 1 1 4 4 4 0 Sensory domain of two-component sensor kinase DUF3659 PF12396.3 gi|57641561|ref|YP_184039.1| - 0.76 9.5 7.0 2.5 7.8 0.0 3.2 3 0 0 3 3 3 0 Protein of unknown function (DUF3659) Homoserine_dh PF00742.14 gi|57641562|ref|YP_184040.1| - 4.6e-54 182.8 0.2 6.3e-54 182.3 0.1 1.2 1 0 0 1 1 1 1 Homoserine dehydrogenase NAD_binding_3 PF03447.11 gi|57641562|ref|YP_184040.1| - 1.9e-07 31.4 0.1 8.8e-07 29.3 0.0 2.1 2 1 0 2 2 2 1 Homoserine dehydrogenase, NAD binding domain ELFV_dehydrog PF00208.16 gi|57641562|ref|YP_184040.1| - 0.00066 19.3 0.0 0.0014 18.2 0.0 1.6 1 1 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ASCH PF04266.9 gi|57641564|ref|YP_184042.1| - 1.7e-07 31.5 0.0 2.6e-07 30.9 0.0 1.4 1 1 0 1 1 1 1 ASCH domain DUF3850 PF12961.2 gi|57641564|ref|YP_184042.1| - 0.0095 15.8 0.0 0.016 15.1 0.0 1.4 1 0 0 1 1 1 1 Domain of Unknown Function with PDB structure (DUF3850) zf-ZPR1 PF03367.8 gi|57641565|ref|YP_184043.1| - 9.4e-54 180.9 0.0 1.2e-53 180.5 0.0 1.1 1 0 0 1 1 1 1 ZPR1 zinc-finger domain Lar_restr_allev PF14354.1 gi|57641565|ref|YP_184043.1| - 0.003 17.8 0.1 0.0063 16.7 0.0 1.5 1 0 0 1 1 1 1 Restriction alleviation protein Lar Prim_Zn_Ribbon PF08273.7 gi|57641565|ref|YP_184043.1| - 0.023 14.7 1.1 0.11 12.6 0.8 2.0 1 1 0 1 1 1 0 Zinc-binding domain of primase-helicase PhnA_Zn_Ribbon PF08274.7 gi|57641565|ref|YP_184043.1| - 0.089 12.6 0.2 0.16 11.7 0.1 1.3 1 0 0 1 1 1 0 PhnA Zinc-Ribbon Cobl PF09469.5 gi|57641565|ref|YP_184043.1| - 0.093 12.7 0.0 0.19 11.7 0.0 1.5 1 0 0 1 1 1 0 Cordon-bleu ubiquitin-like domain UPF0547 PF10571.4 gi|57641565|ref|YP_184043.1| - 1.5 8.6 3.5 3.3 7.4 0.0 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 DUF552 PF04472.7 gi|57641566|ref|YP_184044.1| - 4e-17 61.8 0.1 5.6e-17 61.4 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF552) PucR PF07905.6 gi|57641566|ref|YP_184044.1| - 0.027 14.0 0.2 0.047 13.2 0.1 1.4 2 0 0 2 2 2 0 Purine catabolism regulatory protein-like family Fe_bilin_red PF05996.7 gi|57641566|ref|YP_184044.1| - 0.081 12.3 0.0 0.12 11.8 0.0 1.3 1 0 0 1 1 1 0 Ferredoxin-dependent bilin reductase Peptidase_C39_2 PF13529.1 gi|57641566|ref|YP_184044.1| - 0.15 12.4 0.0 0.16 12.2 0.0 1.2 1 0 0 1 1 1 0 Peptidase_C39 like family DUF998 PF06197.8 gi|57641567|ref|YP_184045.1| - 0.0073 15.6 4.0 0.0085 15.4 2.8 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF998) Tmemb_14 PF03647.8 gi|57641567|ref|YP_184045.1| - 0.027 14.8 2.9 0.04 14.3 2.0 1.3 1 1 0 1 1 1 0 Transmembrane proteins 14C MFS_1 PF07690.11 gi|57641567|ref|YP_184045.1| - 0.038 12.6 2.4 0.042 12.5 1.7 1.0 1 0 0 1 1 1 0 Major Facilitator Superfamily PMT_2 PF13231.1 gi|57641567|ref|YP_184045.1| - 0.051 13.4 6.7 0.095 12.5 0.5 2.1 1 1 1 2 2 2 0 Dolichyl-phosphate-mannose-protein mannosyltransferase DUF3054 PF11255.3 gi|57641567|ref|YP_184045.1| - 0.09 12.6 5.3 0.13 12.1 3.7 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3054) 7TMR-DISM_7TM PF07695.6 gi|57641567|ref|YP_184045.1| - 0.11 12.1 4.1 0.13 11.9 2.9 1.1 1 0 0 1 1 1 0 7TM diverse intracellular signalling Intg_mem_TP0381 PF09529.5 gi|57641567|ref|YP_184045.1| - 0.12 11.5 3.0 0.06 12.5 0.6 1.4 1 1 0 1 1 1 0 Integral membrane protein (intg_mem_TP0381) Exosortase_EpsH PF09721.5 gi|57641567|ref|YP_184045.1| - 0.14 11.3 5.3 0.2 10.8 3.7 1.3 1 0 0 1 1 1 0 Transmembrane exosortase (Exosortase_EpsH) FecCD PF01032.13 gi|57641567|ref|YP_184045.1| - 0.16 10.7 6.8 0.2 10.4 4.7 1.1 1 0 0 1 1 1 0 FecCD transport family DUF2781 PF10914.3 gi|57641567|ref|YP_184045.1| - 0.34 10.6 3.7 0.64 9.7 2.6 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF2781) DUF2079 PF09852.4 gi|57641567|ref|YP_184045.1| - 0.96 8.0 4.9 1.4 7.5 3.4 1.4 1 1 0 1 1 1 0 Predicted membrane protein (DUF2079) VIT1 PF01988.14 gi|57641567|ref|YP_184045.1| - 1.2 8.5 6.7 1.5 8.2 4.7 1.1 1 0 0 1 1 1 0 VIT family UPF0197 PF05251.7 gi|57641567|ref|YP_184045.1| - 1.6 9.0 6.4 2.4 8.5 0.2 2.3 2 1 0 2 2 2 0 Uncharacterised protein family (UPF0197) Glucos_trans_II PF14264.1 gi|57641567|ref|YP_184045.1| - 2.5 7.0 6.5 3 6.7 4.5 1.0 1 0 0 1 1 1 0 Glucosyl transferase GtrII DUF2637 PF10935.3 gi|57641567|ref|YP_184045.1| - 3.7 7.4 7.0 5.7 6.8 0.6 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF2637) O-antigen_lig PF13425.1 gi|57641567|ref|YP_184045.1| - 4.8 7.1 11.0 3.1 7.7 4.2 2.0 1 1 1 2 2 2 0 O-antigen ligase like membrane protein DUF4383 PF14325.1 gi|57641567|ref|YP_184045.1| - 6.5 6.7 7.9 53 3.8 5.5 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF4383) RNase_PH PF01138.16 gi|57641568|ref|YP_184046.1| - 3.5e-27 95.2 0.0 5.3e-27 94.7 0.0 1.3 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.10 gi|57641568|ref|YP_184046.1| - 2.9e-13 49.5 0.6 7.4e-13 48.2 0.0 2.0 2 0 0 2 2 2 1 3' exoribonuclease family, domain 2 RNase_PH PF01138.16 gi|57641569|ref|YP_184047.1| - 3.1e-36 124.6 0.0 4.6e-36 124.0 0.0 1.3 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.10 gi|57641569|ref|YP_184047.1| - 9.4e-18 63.9 0.3 1.7e-17 63.1 0.2 1.4 1 0 0 1 1 1 1 3' exoribonuclease family, domain 2 Pinin_SDK_N PF04697.8 gi|57641569|ref|YP_184047.1| - 0.12 12.4 0.0 0.27 11.2 0.0 1.5 1 0 0 1 1 1 0 pinin/SDK conserved region KH_1 PF00013.24 gi|57641570|ref|YP_184048.1| - 1.3e-11 43.9 0.2 2.9e-11 42.8 0.2 1.6 1 0 0 1 1 1 1 KH domain KH_2 PF07650.12 gi|57641570|ref|YP_184048.1| - 8.3e-07 28.4 1.2 2.7e-06 26.8 0.1 2.2 2 0 0 2 2 2 1 KH domain ECR1_N PF14382.1 gi|57641570|ref|YP_184048.1| - 1.4e-06 27.4 0.1 3e-06 26.3 0.1 1.6 1 0 0 1 1 1 1 Exosome complex exonuclease RRP4 N-terminal region KH_3 PF13014.1 gi|57641570|ref|YP_184048.1| - 1.7e-06 27.5 0.1 4.3e-06 26.2 0.1 1.7 1 0 0 1 1 1 1 KH domain EXOSC1 PF10447.4 gi|57641570|ref|YP_184048.1| - 0.0027 17.5 0.3 0.22 11.5 0.2 2.6 1 1 0 1 1 1 1 Exosome component EXOSC1/CSL4 S1 PF00575.18 gi|57641570|ref|YP_184048.1| - 0.0075 16.3 0.3 0.018 15.1 0.2 1.7 1 0 0 1 1 1 1 S1 RNA binding domain KH_4 PF13083.1 gi|57641570|ref|YP_184048.1| - 0.047 13.3 0.2 0.12 11.9 0.1 1.6 1 0 0 1 1 1 0 KH domain SBDS PF01172.13 gi|57641571|ref|YP_184049.1| - 5.3e-30 103.0 0.1 8.6e-30 102.3 0.0 1.3 1 0 0 1 1 1 1 Shwachman-Bodian-Diamond syndrome (SBDS) protein SBDS_C PF09377.5 gi|57641571|ref|YP_184049.1| - 8.7e-17 60.9 0.0 1.3e-16 60.4 0.0 1.2 1 0 0 1 1 1 1 SBDS protein C-terminal domain Proteasome PF00227.21 gi|57641572|ref|YP_184050.1| - 3.5e-65 218.8 0.2 2.8e-64 215.9 0.0 1.9 1 1 1 2 2 2 1 Proteasome subunit Proteasome_A_N PF10584.4 gi|57641572|ref|YP_184050.1| - 1e-12 47.0 0.1 1.6e-12 46.4 0.0 1.3 1 0 0 1 1 1 1 Proteasome subunit A N-terminal signature SBP_bac_7 PF03480.8 gi|57641572|ref|YP_184050.1| - 0.026 13.6 0.5 0.036 13.1 0.4 1.2 1 0 0 1 1 1 0 Bacterial extracellular solute-binding protein, family 7 Polysacc_deac_1 PF01522.16 gi|57641572|ref|YP_184050.1| - 0.15 11.7 0.0 0.27 10.8 0.0 1.4 1 0 0 1 1 1 0 Polysaccharide deacetylase Bax1-I PF01027.15 gi|57641573|ref|YP_184051.1| - 0.034 13.7 1.2 0.036 13.6 0.8 1.0 1 0 0 1 1 1 0 Inhibitor of apoptosis-promoting Bax1 ATP_synt_I PF03899.10 gi|57641573|ref|YP_184051.1| - 0.036 14.2 3.5 0.045 13.9 2.5 1.2 1 0 0 1 1 1 0 ATP synthase I chain IncA PF04156.9 gi|57641573|ref|YP_184051.1| - 0.046 13.3 2.6 0.049 13.2 1.8 1.2 1 0 0 1 1 1 0 IncA protein DUF2207 PF09972.4 gi|57641573|ref|YP_184051.1| - 0.05 12.1 0.8 0.05 12.1 0.6 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) EcsB PF05975.7 gi|57641573|ref|YP_184051.1| - 0.078 11.4 1.4 0.088 11.2 1.0 1.0 1 0 0 1 1 1 0 Bacterial ABC transporter protein EcsB SdpI PF13630.1 gi|57641573|ref|YP_184051.1| - 0.29 10.8 4.2 0.35 10.6 2.9 1.2 1 0 0 1 1 1 0 SdpI/YhfL protein family DUF1469 PF07332.6 gi|57641573|ref|YP_184051.1| - 2.6 7.7 8.3 3.9 7.2 5.7 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF1469) Gram_pos_anchor PF00746.16 gi|57641573|ref|YP_184051.1| - 2.7 7.8 7.9 0.25 11.2 0.7 2.1 2 0 0 2 2 2 0 Gram positive anchor DUF4229 PF14012.1 gi|57641573|ref|YP_184051.1| - 7 6.6 8.8 8.7 6.3 6.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4229) HIT PF01230.18 gi|57641574|ref|YP_184052.1| - 3.4e-24 85.2 0.0 4.8e-24 84.7 0.0 1.1 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.3 gi|57641574|ref|YP_184052.1| - 2.4e-14 53.5 0.0 3.4e-14 53.0 0.0 1.2 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.10 gi|57641574|ref|YP_184052.1| - 0.0016 18.0 0.0 0.0025 17.4 0.0 1.4 1 0 0 1 1 1 1 Protein similar to CwfJ C-terminus 1 MazG-like PF12643.2 gi|57641575|ref|YP_184053.1| - 6.4e-09 35.6 0.6 4.2e-08 33.0 0.4 1.9 1 1 0 1 1 1 1 MazG-like family MazG PF03819.12 gi|57641575|ref|YP_184053.1| - 1.3e-07 31.4 1.9 2.9e-07 30.3 1.3 1.6 1 1 0 1 1 1 1 MazG nucleotide pyrophosphohydrolase domain PRA-PH PF01503.12 gi|57641575|ref|YP_184053.1| - 3.9e-05 23.8 0.7 5.3e-05 23.4 0.5 1.3 1 1 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase Flp_N PF03930.9 gi|57641576|ref|YP_184054.1| - 0.018 14.8 0.2 0.58 9.9 0.0 2.1 1 1 1 2 2 2 0 Recombinase Flp protein N-terminus Radical_SAM PF04055.16 gi|57641576|ref|YP_184054.1| - 0.028 14.6 0.2 0.035 14.2 0.2 1.1 1 0 0 1 1 1 0 Radical SAM superfamily TerC PF03741.11 gi|57641577|ref|YP_184055.1| - 0.0025 17.2 1.4 0.0027 17.2 1.0 1.1 1 0 0 1 1 1 1 Integral membrane protein TerC family Claudin_2 PF13903.1 gi|57641577|ref|YP_184055.1| - 0.13 11.8 1.7 0.15 11.7 1.2 1.1 1 0 0 1 1 1 0 PMP-22/EMP/MP20/Claudin tight junction DUF4191 PF13829.1 gi|57641577|ref|YP_184055.1| - 0.18 10.9 1.7 0.2 10.7 1.2 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4191) DUF805 PF05656.9 gi|57641577|ref|YP_184055.1| - 0.19 11.5 3.9 0.25 11.2 2.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF805) TcpE PF12648.2 gi|57641577|ref|YP_184055.1| - 0.48 10.5 3.6 0.57 10.3 2.5 1.1 1 0 0 1 1 1 0 TcpE family DUF2892 PF11127.3 gi|57641577|ref|YP_184055.1| - 0.9 9.4 5.2 1.2 9.0 3.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2892) RDD PF06271.7 gi|57641577|ref|YP_184055.1| - 0.99 9.2 5.7 1.2 9.0 4.0 1.1 1 0 0 1 1 1 0 RDD family IncA PF04156.9 gi|57641577|ref|YP_184055.1| - 1.2 8.6 6.7 1.5 8.3 4.6 1.0 1 0 0 1 1 1 0 IncA protein DUF4064 PF13273.1 gi|57641577|ref|YP_184055.1| - 1.4 9.0 9.7 1.8 8.7 6.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4064) DUF2207 PF09972.4 gi|57641577|ref|YP_184055.1| - 1.6 7.2 3.9 1.8 7.0 2.7 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) Tmemb_55A PF09788.4 gi|57641577|ref|YP_184055.1| - 1.8 7.6 3.7 1.9 7.5 2.6 1.0 1 0 0 1 1 1 0 Transmembrane protein 55A DUF4389 PF14333.1 gi|57641577|ref|YP_184055.1| - 5.5 6.7 8.2 15 5.3 2.6 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4389) TPP_enzyme_C PF02775.16 gi|57641578|ref|YP_184056.1| - 5.6e-32 110.4 0.1 9.5e-32 109.6 0.0 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.14 gi|57641578|ref|YP_184056.1| - 9.5e-15 54.7 0.0 1.6e-14 54.0 0.0 1.3 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Fer4 PF00037.22 gi|57641578|ref|YP_184056.1| - 1.9e-10 39.9 11.0 7.6e-07 28.4 1.4 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|57641578|ref|YP_184056.1| - 1.8e-07 30.6 11.5 0.0015 18.3 1.2 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|57641578|ref|YP_184056.1| - 2.8e-07 30.8 9.2 2.8e-07 30.8 6.4 1.9 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|57641578|ref|YP_184056.1| - 3.6e-07 29.7 8.9 0.00087 19.0 1.1 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|57641578|ref|YP_184056.1| - 3.9e-07 29.7 8.6 8.5e-07 28.6 5.9 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|57641578|ref|YP_184056.1| - 1e-05 25.6 9.6 2.8e-05 24.3 6.7 1.8 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|57641578|ref|YP_184056.1| - 1.1e-05 25.1 11.2 0.00014 21.6 7.6 2.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|57641578|ref|YP_184056.1| - 0.00033 21.1 6.7 0.011 16.3 0.4 2.7 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_11 PF13247.1 gi|57641578|ref|YP_184056.1| - 0.0004 20.2 2.6 0.001 18.9 1.8 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain TPP_enzyme_N PF02776.13 gi|57641578|ref|YP_184056.1| - 0.0019 17.7 0.1 0.18 11.2 0.0 2.2 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Fer4_8 PF13183.1 gi|57641578|ref|YP_184056.1| - 0.0075 16.2 9.9 0.021 14.8 6.8 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain DXP_synthase_N PF13292.1 gi|57641578|ref|YP_184056.1| - 0.011 14.6 0.5 0.36 9.7 0.0 2.3 1 1 0 2 2 2 0 1-deoxy-D-xylulose-5-phosphate synthase Fer4_4 PF12800.2 gi|57641578|ref|YP_184056.1| - 0.026 14.8 12.7 0.24 11.8 1.8 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain Transket_pyr PF02779.19 gi|57641578|ref|YP_184056.1| - 0.03 13.8 0.0 4 6.9 0.0 2.6 2 1 0 2 2 2 0 Transketolase, pyrimidine binding domain Fer4_18 PF13746.1 gi|57641578|ref|YP_184056.1| - 0.17 12.2 8.1 0.44 10.9 0.9 2.9 2 0 0 2 2 2 0 4Fe-4S dicluster domain KIP1 PF07765.7 gi|57641578|ref|YP_184056.1| - 0.18 11.6 0.3 4.3 7.2 0.1 2.4 2 0 0 2 2 2 0 KIP1-like protein Fer4_16 PF13484.1 gi|57641578|ref|YP_184056.1| - 1.6 9.5 12.1 0.22 12.2 1.6 2.6 1 1 3 4 4 4 0 4Fe-4S double cluster binding domain Fer4_17 PF13534.1 gi|57641578|ref|YP_184056.1| - 2.3 8.6 12.0 3.7 7.9 2.3 2.7 1 1 2 3 3 3 0 4Fe-4S dicluster domain PIN PF01850.16 gi|57641579|ref|YP_184057.1| - 9e-25 87.3 0.6 2.7e-24 85.8 0.4 1.6 1 1 0 1 1 1 1 PIN domain PIN_3 PF13470.1 gi|57641579|ref|YP_184057.1| - 0.007 17.0 0.0 0.0098 16.5 0.0 1.3 1 0 0 1 1 1 1 PIN domain DUF4547 PF15080.1 gi|57641579|ref|YP_184057.1| - 0.057 12.8 0.1 0.08 12.3 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4547) DUF4152 PF13680.1 gi|57641581|ref|YP_184059.1| - 8e-131 433.9 0.6 8.9e-131 433.8 0.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF4152) TPR_11 PF13414.1 gi|57641583|ref|YP_184061.1| - 0.0065 16.0 0.2 0.012 15.2 0.1 1.5 1 0 0 1 1 1 1 TPR repeat UPF0118 PF01594.11 gi|57641584|ref|YP_184062.1| - 1e-52 179.1 26.9 1.2e-52 178.9 18.7 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF20 Isochorismatase PF00857.15 gi|57641585|ref|YP_184063.1| - 2.7e-45 154.3 0.0 3e-45 154.2 0.0 1.0 1 0 0 1 1 1 1 Isochorismatase family Fer2_4 PF13510.1 gi|57641585|ref|YP_184063.1| - 0.079 12.7 0.0 0.77 9.6 0.0 2.1 2 0 0 2 2 2 0 2Fe-2S iron-sulfur cluster binding domain DUF2240 PF09999.4 gi|57641586|ref|YP_184064.1| - 3.9e-07 29.5 0.0 1.7e-05 24.2 0.0 2.0 1 1 1 2 2 2 2 Uncharacterized protein conserved in archaea (DUF2240) DUF2067 PF09840.4 gi|57641586|ref|YP_184064.1| - 0.027 13.9 1.5 0.048 13.1 1.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2067) CDC37_C PF08564.5 gi|57641586|ref|YP_184064.1| - 0.11 12.3 0.3 0.18 11.6 0.2 1.3 1 0 0 1 1 1 0 Cdc37 C terminal domain 4HBT PF03061.17 gi|57641587|ref|YP_184065.1| - 1.4e-09 37.9 0.2 6e-09 35.9 0.0 2.0 2 0 0 2 2 2 1 Thioesterase superfamily MaoC_dehydratas PF01575.14 gi|57641587|ref|YP_184065.1| - 0.00045 19.6 0.0 0.00062 19.1 0.0 1.3 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.1 gi|57641587|ref|YP_184065.1| - 0.0068 16.2 0.1 0.017 14.9 0.0 1.7 1 1 0 1 1 1 1 N-terminal half of MaoC dehydratase SdpI PF13630.1 gi|57641588|ref|YP_184066.1| - 1.1 8.9 10.9 1 9.0 0.5 3.1 1 1 1 3 3 3 0 SdpI/YhfL protein family DUF334 PF03904.8 gi|57641588|ref|YP_184066.1| - 2.8 7.2 4.9 0.45 9.7 0.4 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF334) PadR PF03551.9 gi|57641589|ref|YP_184067.1| - 4.4e-16 58.4 0.2 5.3e-16 58.1 0.2 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_34 PF13601.1 gi|57641589|ref|YP_184067.1| - 0.0008 19.3 0.0 0.00097 19.1 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_27 PF13463.1 gi|57641589|ref|YP_184067.1| - 0.012 15.8 0.1 0.035 14.4 0.0 1.9 2 1 0 2 2 2 0 Winged helix DNA-binding domain FUR PF01475.14 gi|57641589|ref|YP_184067.1| - 0.017 15.0 0.0 0.018 14.9 0.0 1.2 1 0 0 1 1 1 0 Ferric uptake regulator family Sulfolobus_pRN PF05584.6 gi|57641589|ref|YP_184067.1| - 0.022 14.6 0.2 0.037 13.9 0.0 1.5 1 1 1 2 2 2 0 Sulfolobus plasmid regulatory protein Rrf2 PF02082.15 gi|57641589|ref|YP_184067.1| - 0.034 14.2 0.0 0.049 13.7 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator Penicillinase_R PF03965.11 gi|57641589|ref|YP_184067.1| - 0.045 13.8 0.0 0.053 13.6 0.0 1.1 1 0 0 1 1 1 0 Penicillinase repressor HTH_45 PF14947.1 gi|57641589|ref|YP_184067.1| - 0.052 13.3 0.0 0.081 12.7 0.0 1.5 1 1 0 1 1 1 0 Winged helix-turn-helix OprB PF04966.7 gi|57641589|ref|YP_184067.1| - 0.12 11.4 0.0 0.14 11.2 0.0 1.0 1 0 0 1 1 1 0 Carbohydrate-selective porin, OprB family MFS_1 PF07690.11 gi|57641590|ref|YP_184068.1| - 4e-42 144.2 23.1 9.3e-26 90.3 3.6 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.1 gi|57641590|ref|YP_184068.1| - 3.1e-12 45.6 10.9 3.1e-12 45.6 7.5 1.9 1 1 0 1 1 1 1 MFS/sugar transport protein PUCC PF03209.10 gi|57641590|ref|YP_184068.1| - 0.011 14.5 12.2 0.27 9.8 2.3 3.6 3 1 1 4 4 4 0 PUCC protein MFS_3 PF05977.8 gi|57641590|ref|YP_184068.1| - 0.036 12.1 4.4 0.033 12.3 1.4 1.9 2 0 0 2 2 2 0 Transmembrane secretion effector DUF2562 PF10814.3 gi|57641590|ref|YP_184068.1| - 0.075 12.9 0.3 3.2 7.7 0.0 2.6 3 0 0 3 3 3 0 Protein of unknown function (DUF2562) Asparaginase PF00710.15 gi|57641591|ref|YP_184069.1| - 2.5e-89 299.2 0.0 2.8e-89 299.0 0.0 1.0 1 0 0 1 1 1 1 Asparaginase DUF4242 PF14026.1 gi|57641592|ref|YP_184070.1| - 0.11 12.6 0.1 0.14 12.2 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4242) tRNA_synt_2f PF02092.12 gi|57641593|ref|YP_184071.1| - 0.076 11.5 0.0 0.082 11.4 0.0 1.0 1 0 0 1 1 1 0 Glycyl-tRNA synthetase beta subunit MarC PF01914.12 gi|57641594|ref|YP_184072.1| - 2e-65 219.7 13.7 2.3e-65 219.5 9.5 1.0 1 0 0 1 1 1 1 MarC family integral membrane protein ATPase_gene1 PF09527.5 gi|57641594|ref|YP_184072.1| - 0.0068 16.1 1.5 0.0068 16.1 1.0 2.5 3 0 0 3 3 3 1 Putative F0F1-ATPase subunit (ATPase_gene1) DUF4293 PF14126.1 gi|57641594|ref|YP_184072.1| - 0.0079 16.1 10.5 0.0084 16.0 4.6 2.1 1 1 1 2 2 2 1 Domain of unknown function (DUF4293) PEN-2 PF10251.4 gi|57641594|ref|YP_184072.1| - 0.27 11.4 2.0 2.6 8.3 0.1 2.2 2 0 0 2 2 2 0 Presenilin enhancer-2 subunit of gamma secretase DUF3754 PF12576.3 gi|57641594|ref|YP_184072.1| - 2.5 7.7 5.8 2.1 7.9 0.2 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3754) DUF2101 PF09874.4 gi|57641596|ref|YP_184074.1| - 3.1e-96 320.7 13.1 3.6e-96 320.5 9.1 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2101) DUF2062 PF09835.4 gi|57641596|ref|YP_184074.1| - 0.025 14.2 0.2 0.025 14.2 0.2 1.6 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2062) RPN7 PF10602.4 gi|57641597|ref|YP_184075.1| - 0.12 11.7 0.0 0.18 11.1 0.0 1.3 1 0 0 1 1 1 0 26S proteasome subunit RPN7 Bactofilin PF04519.8 gi|57641599|ref|YP_184077.1| - 1.4e-07 31.4 0.2 0.014 15.3 0.0 3.1 2 0 0 2 2 2 2 Polymer-forming cytoskeletal Lipoprotein_21 PF14041.1 gi|57641599|ref|YP_184077.1| - 0.059 13.3 0.8 1.6 8.7 0.1 3.5 5 0 0 5 5 5 0 LppP/LprE lipoprotein MinC_C PF03775.11 gi|57641599|ref|YP_184077.1| - 0.38 10.3 2.6 22 4.7 0.0 2.6 2 0 0 2 2 2 0 Septum formation inhibitor MinC, C-terminal domain Kelch_6 PF13964.1 gi|57641599|ref|YP_184077.1| - 0.74 10.0 6.8 0.81 9.9 0.5 4.1 3 1 0 3 3 3 0 Kelch motif NADHdh PF00146.16 gi|57641600|ref|YP_184078.1| - 0.00078 18.5 1.7 0.0011 18.1 1.2 1.1 1 0 0 1 1 1 1 NADH dehydrogenase Class_IIIsignal PF04021.7 gi|57641600|ref|YP_184078.1| - 0.0023 17.5 3.8 0.0083 15.8 2.7 2.0 1 1 0 1 1 1 1 Class III signal peptide Class_IIIsignal PF04021.7 gi|57641602|ref|YP_184080.1| - 1.4e-08 34.1 0.7 3e-08 33.0 0.5 1.6 1 0 0 1 1 1 1 Class III signal peptide DUF2244 PF10003.4 gi|57641603|ref|YP_184081.1| - 0.11 11.8 0.3 0.24 10.7 0.1 1.5 2 0 0 2 2 2 0 Integral membrane protein (DUF2244) Tubulin PF00091.20 gi|57641604|ref|YP_184082.1| - 4.9e-26 91.9 0.1 3.7e-24 85.7 0.1 2.1 1 1 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain Prenyltrans_2 PF13249.1 gi|57641605|ref|YP_184083.1| - 1.8e-32 112.0 0.0 8.8e-14 51.8 0.0 4.8 3 1 1 5 5 5 3 Prenyltransferase-like Prenyltrans_1 PF13243.1 gi|57641605|ref|YP_184083.1| - 3.2e-20 72.1 0.0 9.7e-09 35.2 0.0 4.4 3 1 1 4 4 4 4 Prenyltransferase-like Prenyltrans PF00432.16 gi|57641605|ref|YP_184083.1| - 8.8e-13 47.5 2.5 0.00014 21.3 0.0 4.7 5 0 0 5 5 5 2 Prenyltransferase and squalene oxidase repeat A2M_comp PF07678.9 gi|57641605|ref|YP_184083.1| - 0.0067 15.6 0.7 3.3 6.8 0.3 4.1 2 1 1 3 3 3 1 A-macroglobulin complement component EF-hand_1 PF00036.27 gi|57641605|ref|YP_184083.1| - 0.066 12.5 0.0 0.16 11.3 0.0 1.6 1 0 0 1 1 1 0 EF hand EF-hand_5 PF13202.1 gi|57641605|ref|YP_184083.1| - 0.087 12.2 0.0 0.2 11.0 0.0 1.5 1 0 0 1 1 1 0 EF hand Pec_lyase PF09492.5 gi|57641605|ref|YP_184083.1| - 0.12 11.5 0.4 1 8.4 0.0 2.5 2 1 1 3 3 3 0 Pectic acid lyase Radical_SAM PF04055.16 gi|57641606|ref|YP_184084.1| - 9.5e-26 90.9 0.0 3.5e-25 89.0 0.0 1.9 2 0 0 2 2 2 1 Radical SAM superfamily Wyosine_form PF08608.7 gi|57641606|ref|YP_184084.1| - 1.4e-23 82.7 0.0 7.7e-23 80.3 0.0 2.2 2 0 0 2 2 2 1 Wyosine base formation Fer4_12 PF13353.1 gi|57641606|ref|YP_184084.1| - 3.4e-07 30.4 0.3 0.00021 21.3 0.2 2.6 2 1 0 2 2 2 2 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|57641606|ref|YP_184084.1| - 0.00044 20.2 0.7 0.0026 17.7 0.5 2.2 1 1 0 1 1 1 1 4Fe-4S single cluster domain SecY PF00344.15 gi|57641606|ref|YP_184084.1| - 0.17 10.8 0.0 0.22 10.4 0.0 1.1 1 0 0 1 1 1 0 SecY translocase MTS PF05175.9 gi|57641608|ref|YP_184086.1| - 4.9e-22 78.0 0.0 5.7e-22 77.8 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.1 gi|57641608|ref|YP_184086.1| - 5.3e-19 68.3 0.0 6.8e-19 67.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|57641608|ref|YP_184086.1| - 1.4e-16 60.5 0.0 2e-16 60.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|57641608|ref|YP_184086.1| - 6.6e-13 49.2 0.0 1.5e-12 48.0 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|57641608|ref|YP_184086.1| - 3.4e-11 42.7 0.2 8.3e-11 41.5 0.1 1.5 2 0 0 2 2 2 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_11 PF08241.7 gi|57641608|ref|YP_184086.1| - 1.6e-07 31.7 0.0 2.1e-06 28.1 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain Met_10 PF02475.11 gi|57641608|ref|YP_184086.1| - 6.4e-07 29.1 0.0 7e-07 29.0 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_25 PF13649.1 gi|57641608|ref|YP_184086.1| - 1.7e-06 28.3 0.0 4.1e-06 27.0 0.0 1.7 1 1 1 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|57641608|ref|YP_184086.1| - 3.7e-05 23.5 0.0 0.00036 20.3 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|57641608|ref|YP_184086.1| - 0.00015 20.9 0.0 0.00069 18.7 0.0 1.8 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family PCMT PF01135.14 gi|57641608|ref|YP_184086.1| - 0.00056 19.4 0.0 0.00081 18.9 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_12 PF08242.7 gi|57641608|ref|YP_184086.1| - 0.00068 20.0 0.0 0.0033 17.8 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_15 PF09445.5 gi|57641608|ref|YP_184086.1| - 0.0073 15.8 0.0 0.014 14.9 0.0 1.3 1 1 0 1 1 1 1 RNA cap guanine-N2 methyltransferase UPF0020 PF01170.13 gi|57641608|ref|YP_184086.1| - 0.0083 15.7 0.0 0.014 14.9 0.0 1.3 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 tRNA_U5-meth_tr PF05958.6 gi|57641608|ref|YP_184086.1| - 0.021 13.5 0.1 0.028 13.1 0.0 1.1 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase CMAS PF02353.15 gi|57641608|ref|YP_184086.1| - 0.038 13.0 0.0 0.1 11.6 0.0 1.6 1 1 0 1 1 1 0 Mycolic acid cyclopropane synthetase Methyltransf_24 PF13578.1 gi|57641608|ref|YP_184086.1| - 0.045 14.5 0.0 0.078 13.8 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain TRM PF02005.11 gi|57641608|ref|YP_184086.1| - 0.088 11.7 0.0 0.13 11.1 0.0 1.3 1 0 0 1 1 1 0 N2,N2-dimethylguanosine tRNA methyltransferase Flavin_Reduct PF01613.13 gi|57641609|ref|YP_184087.1| - 1.7e-24 86.4 0.0 1.9e-24 86.2 0.0 1.0 1 0 0 1 1 1 1 Flavin reductase like domain DUF4377 PF14302.1 gi|57641609|ref|YP_184087.1| - 0.0018 18.1 0.0 0.0033 17.2 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4377) Peptidase_S8 PF00082.17 gi|57641610|ref|YP_184088.1| - 1.6e-56 191.5 4.5 2e-56 191.2 3.1 1.1 1 0 0 1 1 1 1 Subtilase family Inhibitor_I9 PF05922.11 gi|57641610|ref|YP_184088.1| - 0.027 15.0 0.0 0.054 14.0 0.0 1.4 1 0 0 1 1 1 0 Peptidase inhibitor I9 DIM PF08194.7 gi|57641610|ref|YP_184088.1| - 0.12 12.2 0.5 0.27 11.2 0.4 1.5 1 0 0 1 1 1 0 DIM protein QRPTase_C PF01729.14 gi|57641611|ref|YP_184089.1| - 2.1e-27 95.7 0.0 2.9e-27 95.2 0.0 1.2 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.11 gi|57641611|ref|YP_184089.1| - 1.1e-06 28.3 0.0 2.2e-06 27.3 0.0 1.5 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain NIR_SIR_ferr PF03460.12 gi|57641611|ref|YP_184089.1| - 0.0073 15.9 0.0 0.018 14.6 0.0 1.6 1 0 0 1 1 1 1 Nitrite/Sulfite reductase ferredoxin-like half domain NAPRTase PF04095.11 gi|57641611|ref|YP_184089.1| - 0.095 11.9 0.0 0.26 10.5 0.0 1.9 1 1 0 1 1 1 0 Nicotinate phosphoribosyltransferase (NAPRTase) family Ribosomal_L17 PF01196.14 gi|57641611|ref|YP_184089.1| - 0.11 13.0 0.0 0.32 11.6 0.0 1.7 1 0 0 1 1 1 0 Ribosomal protein L17 DNA_ligase_ZBD PF03119.11 gi|57641611|ref|YP_184089.1| - 0.16 11.6 2.3 1 9.1 0.6 2.3 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain adh_short PF00106.20 gi|57641612|ref|YP_184090.1| - 2e-27 96.1 0.1 2.6e-27 95.7 0.1 1.2 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|57641612|ref|YP_184090.1| - 3.4e-26 92.5 0.0 4.1e-26 92.2 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|57641612|ref|YP_184090.1| - 1.4e-06 28.0 0.0 2.6e-06 27.2 0.0 1.3 1 1 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|57641612|ref|YP_184090.1| - 9.3e-05 21.9 0.1 0.00042 19.8 0.1 1.9 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family Eno-Rase_NADH_b PF12242.3 gi|57641612|ref|YP_184090.1| - 0.00045 19.9 0.1 0.0013 18.4 0.1 1.8 1 0 0 1 1 1 1 NAD(P)H binding domain of trans-2-enoyl-CoA reductase Ldh_1_N PF00056.18 gi|57641612|ref|YP_184090.1| - 0.025 14.4 0.3 0.048 13.4 0.1 1.6 2 0 0 2 2 2 0 lactate/malate dehydrogenase, NAD binding domain DUF43 PF01861.11 gi|57641612|ref|YP_184090.1| - 0.11 11.4 0.0 0.18 10.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function DUF43 Lactamase_B_2 PF12706.2 gi|57641616|ref|YP_184094.1| - 1.5e-12 47.5 0.0 1.9e-12 47.1 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|57641616|ref|YP_184094.1| - 1.5e-08 34.5 0.0 1.9e-08 34.1 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|57641616|ref|YP_184094.1| - 9.4e-05 22.1 0.0 0.0003 20.5 0.0 1.8 2 1 0 2 2 2 1 Metallo-beta-lactamase superfamily DUF592 PF04574.8 gi|57641617|ref|YP_184095.1| - 0.096 12.2 0.2 0.59 9.6 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF592) Fer4_20 PF14691.1 gi|57641619|ref|YP_184097.1| - 4.5e-39 132.4 0.2 8.1e-39 131.6 0.1 1.4 1 0 0 1 1 1 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Pyr_redox_2 PF07992.9 gi|57641619|ref|YP_184097.1| - 1.8e-23 83.5 5.8 3.6e-10 40.0 0.2 4.0 2 2 1 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|57641619|ref|YP_184097.1| - 1.7e-16 60.3 4.6 1.6e-07 31.5 0.1 3.8 3 1 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|57641619|ref|YP_184097.1| - 2e-16 60.7 0.1 1.5e-06 28.3 0.0 3.1 2 1 1 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|57641619|ref|YP_184097.1| - 8.5e-10 38.5 0.8 1.1e-08 34.9 0.0 2.3 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain GIDA PF01134.17 gi|57641619|ref|YP_184097.1| - 1.7e-07 30.5 0.8 4.9e-05 22.3 0.1 2.6 2 0 0 2 2 2 2 Glucose inhibited division protein A Thi4 PF01946.12 gi|57641619|ref|YP_184097.1| - 1.8e-07 30.5 0.6 6e-07 28.7 0.0 1.9 2 0 0 2 2 2 1 Thi4 family DAO PF01266.19 gi|57641619|ref|YP_184097.1| - 7.1e-07 28.4 5.8 0.00024 20.1 0.3 3.9 3 1 1 4 4 4 1 FAD dependent oxidoreductase AlaDh_PNT_C PF01262.16 gi|57641619|ref|YP_184097.1| - 2.5e-06 27.1 0.4 0.061 12.8 0.0 2.5 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain HI0933_like PF03486.9 gi|57641619|ref|YP_184097.1| - 2.9e-06 26.0 6.3 1.7e-05 23.5 0.8 2.7 3 0 0 3 3 3 1 HI0933-like protein FAD_oxidored PF12831.2 gi|57641619|ref|YP_184097.1| - 2.5e-05 23.5 3.8 0.00025 20.2 0.0 2.4 3 0 0 3 3 3 1 FAD dependent oxidoreductase NAD_binding_7 PF13241.1 gi|57641619|ref|YP_184097.1| - 5.2e-05 23.4 1.3 0.14 12.4 0.1 2.8 2 1 0 2 2 2 2 Putative NAD(P)-binding FAD_binding_3 PF01494.14 gi|57641619|ref|YP_184097.1| - 5.3e-05 22.4 1.4 6.1e-05 22.2 0.2 1.6 2 0 0 2 2 2 1 FAD binding domain FAD_binding_2 PF00890.19 gi|57641619|ref|YP_184097.1| - 7.1e-05 21.8 1.6 7.1e-05 21.8 1.1 3.2 2 1 0 3 3 3 1 FAD binding domain Shikimate_DH PF01488.15 gi|57641619|ref|YP_184097.1| - 9.7e-05 22.4 1.6 0.53 10.3 0.0 3.5 3 0 0 3 3 3 1 Shikimate / quinate 5-dehydrogenase Amino_oxidase PF01593.19 gi|57641619|ref|YP_184097.1| - 0.00025 20.2 1.2 0.01 14.9 0.0 2.8 2 1 1 3 3 3 1 Flavin containing amine oxidoreductase 3HCDH_N PF02737.13 gi|57641619|ref|YP_184097.1| - 0.0015 18.2 0.3 0.13 11.9 0.0 2.3 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|57641619|ref|YP_184097.1| - 0.0025 18.2 2.9 0.36 11.2 0.3 3.5 2 1 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent FMO-like PF00743.14 gi|57641619|ref|YP_184097.1| - 0.003 15.8 0.0 0.039 12.1 0.0 2.0 2 0 0 2 2 2 1 Flavin-binding monooxygenase-like 2-Hacid_dh_C PF02826.14 gi|57641619|ref|YP_184097.1| - 0.0045 16.1 0.1 2.4 7.2 0.0 2.8 3 0 0 3 3 3 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CPSase_L_chain PF00289.17 gi|57641619|ref|YP_184097.1| - 0.0047 17.0 0.3 1.8 8.7 0.0 2.7 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, N-terminal domain NAD_binding_9 PF13454.1 gi|57641619|ref|YP_184097.1| - 0.01 15.5 2.3 0.049 13.4 0.1 2.6 3 0 0 3 3 3 0 FAD-NAD(P)-binding NAD_Gly3P_dh_N PF01210.18 gi|57641619|ref|YP_184097.1| - 0.016 14.9 0.1 0.68 9.6 0.0 2.3 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus UDPG_MGDP_dh_N PF03721.9 gi|57641619|ref|YP_184097.1| - 0.016 14.5 0.2 0.065 12.5 0.2 2.1 1 1 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Lycopene_cycl PF05834.7 gi|57641619|ref|YP_184097.1| - 0.022 13.6 0.3 0.054 12.4 0.2 1.6 1 0 0 1 1 1 0 Lycopene cyclase protein DJ-1_PfpI PF01965.19 gi|57641619|ref|YP_184097.1| - 0.023 14.1 0.0 2.8 7.3 0.0 2.7 2 0 0 2 2 2 0 DJ-1/PfpI family XdhC_C PF13478.1 gi|57641619|ref|YP_184097.1| - 0.047 13.9 0.1 4.3 7.6 0.0 2.5 2 0 0 2 2 2 0 XdhC Rossmann domain TrkA_N PF02254.13 gi|57641619|ref|YP_184097.1| - 0.073 13.0 0.4 5.2 7.1 0.0 2.8 3 0 0 3 3 2 0 TrkA-N domain NAD_binding_10 PF13460.1 gi|57641619|ref|YP_184097.1| - 0.11 12.5 6.0 4.9 7.1 0.1 3.9 4 0 0 4 4 4 0 NADH(P)-binding DHODB_Fe-S_bind PF10418.4 gi|57641620|ref|YP_184098.1| - 9.5e-12 44.2 1.5 1.7e-11 43.4 1.1 1.4 1 0 0 1 1 1 1 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B FAD_binding_6 PF00970.19 gi|57641620|ref|YP_184098.1| - 0.00033 20.7 0.0 0.00084 19.4 0.0 1.6 1 0 0 1 1 1 1 Oxidoreductase FAD-binding domain Peripla_BP_6 PF13458.1 gi|57641620|ref|YP_184098.1| - 0.0052 16.1 0.0 0.0083 15.5 0.0 1.3 1 0 0 1 1 1 1 Periplasmic binding protein Fer2_3 PF13085.1 gi|57641620|ref|YP_184098.1| - 0.051 13.4 1.0 0.2 11.4 0.1 2.3 3 0 0 3 3 3 0 2Fe-2S iron-sulfur cluster binding domain DUF137 PF02006.11 gi|57641621|ref|YP_184099.1| - 6.7e-78 260.1 0.4 8.3e-78 259.8 0.3 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF137 PALP PF00291.20 gi|57641622|ref|YP_184100.1| - 9.9e-50 169.4 0.0 1.4e-49 169.0 0.0 1.2 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Glucosamine_iso PF01182.15 gi|57641622|ref|YP_184100.1| - 0.023 14.4 0.0 0.036 13.7 0.0 1.3 1 0 0 1 1 1 0 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase DUF2605 PF10792.4 gi|57641622|ref|YP_184100.1| - 0.087 12.5 0.0 0.24 11.0 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2605) HTH_19 PF12844.2 gi|57641623|ref|YP_184101.1| - 1.2e-10 41.2 0.0 7.9e-10 38.6 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_3 PF01381.17 gi|57641623|ref|YP_184101.1| - 2.5e-09 36.8 0.0 5.5e-09 35.7 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.1 gi|57641623|ref|YP_184101.1| - 5.9e-08 32.8 0.0 1.4e-07 31.5 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain NUMOD1 PF07453.8 gi|57641623|ref|YP_184101.1| - 0.0035 17.1 0.0 0.0079 16.0 0.0 1.6 1 0 0 1 1 1 1 NUMOD1 domain Phage_CI_repr PF07022.8 gi|57641623|ref|YP_184101.1| - 0.011 15.7 0.0 0.015 15.3 0.0 1.4 1 1 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain HTH_37 PF13744.1 gi|57641623|ref|YP_184101.1| - 0.053 13.3 0.0 0.12 12.1 0.0 1.7 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_11 PF08279.7 gi|57641623|ref|YP_184101.1| - 0.11 12.2 0.0 0.36 10.5 0.0 1.9 1 0 0 1 1 1 0 HTH domain Peptidase_S8 PF00082.17 gi|57641624|ref|YP_184102.1| - 3.5e-71 239.6 12.9 6.5e-71 238.7 8.9 1.4 1 0 0 1 1 1 1 Subtilase family PPC PF04151.10 gi|57641624|ref|YP_184102.1| - 1.3e-15 58.0 18.5 5.2e-10 40.1 2.0 3.4 3 0 0 3 3 3 2 Bacterial pre-peptidase C-terminal domain Lipase_GDSL_2 PF13472.1 gi|57641624|ref|YP_184102.1| - 0.001 19.2 0.2 0.0027 17.8 0.0 1.9 2 1 0 2 2 2 1 GDSL-like Lipase/Acylhydrolase family FlgD_ig PF13860.1 gi|57641624|ref|YP_184102.1| - 0.0038 16.9 0.9 2.6 7.8 0.0 3.6 3 0 0 3 3 3 2 FlgD Ig-like domain Prenyltrans_2 PF13249.1 gi|57641625|ref|YP_184103.1| - 4.9e-21 75.2 7.4 9.7e-11 42.0 0.1 4.8 3 2 2 5 5 5 3 Prenyltransferase-like Prenyltrans_1 PF13243.1 gi|57641625|ref|YP_184103.1| - 3.6e-12 46.2 6.1 1.3e-06 28.3 1.0 4.7 3 2 1 4 4 4 3 Prenyltransferase-like Pec_lyase PF09492.5 gi|57641625|ref|YP_184103.1| - 0.11 11.6 1.2 8.3 5.4 0.0 2.7 2 1 1 3 3 3 0 Pectic acid lyase DUF43 PF01861.11 gi|57641626|ref|YP_184104.1| - 1.4e-119 397.5 0.1 1.8e-119 397.1 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF43 Methyltransf_31 PF13847.1 gi|57641626|ref|YP_184104.1| - 0.00095 18.7 0.0 0.0016 18.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|57641626|ref|YP_184104.1| - 0.008 16.2 0.0 0.018 15.0 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain N6-adenineMlase PF10237.4 gi|57641626|ref|YP_184104.1| - 0.0086 15.7 0.0 0.011 15.3 0.0 1.3 1 0 0 1 1 1 1 Probable N6-adenine methyltransferase DUF1217 PF06748.7 gi|57641626|ref|YP_184104.1| - 0.038 14.0 0.0 0.062 13.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1217) ATP_bind_3 PF01171.15 gi|57641627|ref|YP_184105.1| - 0.055 12.9 0.4 0.099 12.1 0.0 1.6 2 0 0 2 2 2 0 PP-loop family QueC PF06508.8 gi|57641627|ref|YP_184105.1| - 0.064 12.5 0.0 0.15 11.2 0.0 1.6 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.11 gi|57641627|ref|YP_184105.1| - 0.065 11.7 0.0 0.085 11.3 0.0 1.1 1 0 0 1 1 1 0 tRNA methyl transferase DUF59 PF01883.14 gi|57641628|ref|YP_184106.1| - 4.8e-24 84.1 1.3 1.8e-20 72.7 0.0 2.3 2 0 0 2 2 2 2 Domain of unknown function DUF59 HMA PF00403.21 gi|57641628|ref|YP_184106.1| - 0.11 12.6 10.3 1 9.5 0.0 3.6 3 1 0 3 3 3 0 Heavy-metal-associated domain Repressor_Mnt PF11423.3 gi|57641628|ref|YP_184106.1| - 9.7 5.6 7.5 0.32 10.3 0.8 1.8 2 0 0 2 2 2 0 Regulatory protein Mnt Fer4_15 PF13459.1 gi|57641629|ref|YP_184107.1| - 3.8e-17 62.6 6.6 4.3e-17 62.4 4.6 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|57641629|ref|YP_184107.1| - 5.2e-16 58.7 4.8 6.5e-16 58.4 3.3 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_19 PF06902.6 gi|57641629|ref|YP_184107.1| - 1.3e-07 31.3 1.0 1.4e-07 31.2 0.7 1.0 1 0 0 1 1 1 1 Divergent 4Fe-4S mono-cluster Fer4 PF00037.22 gi|57641629|ref|YP_184107.1| - 9.2e-06 25.0 7.0 0.0059 16.1 1.2 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|57641629|ref|YP_184107.1| - 1.6e-05 25.0 1.4 2e-05 24.7 1.0 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|57641629|ref|YP_184107.1| - 0.0012 19.2 3.0 0.17 12.2 2.6 2.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|57641629|ref|YP_184107.1| - 0.0047 16.7 1.0 0.0047 16.7 0.7 2.2 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_21 PF14697.1 gi|57641629|ref|YP_184107.1| - 0.0056 16.5 4.7 0.076 12.8 3.3 2.0 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|57641629|ref|YP_184107.1| - 0.0069 16.1 2.3 0.013 15.3 1.6 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|57641629|ref|YP_184107.1| - 0.038 13.8 7.2 0.2 11.5 0.6 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_16 PF13484.1 gi|57641629|ref|YP_184107.1| - 0.26 12.0 3.4 2.9 8.7 0.1 2.2 1 1 2 3 3 3 0 4Fe-4S double cluster binding domain Fer4_3 PF12798.2 gi|57641629|ref|YP_184107.1| - 1.1 9.9 6.2 7.7 7.3 0.7 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Ribosomal_S27 PF01599.14 gi|57641630|ref|YP_184108.1| - 1.1e-21 76.3 2.4 1.3e-21 76.1 1.6 1.1 1 0 0 1 1 1 1 Ribosomal protein S27a GFA PF04828.9 gi|57641630|ref|YP_184108.1| - 0.00044 20.1 2.1 0.0069 16.3 0.1 2.0 1 1 1 2 2 2 1 Glutathione-dependent formaldehyde-activating enzyme DZR PF12773.2 gi|57641630|ref|YP_184108.1| - 0.001 18.8 0.4 0.0014 18.3 0.3 1.3 1 0 0 1 1 1 1 Double zinc ribbon RNA_POL_M_15KD PF02150.11 gi|57641630|ref|YP_184108.1| - 0.0065 16.1 2.6 0.018 14.7 1.8 1.7 1 1 0 1 1 1 1 RNA polymerases M/15 Kd subunit Ribosomal_L37e PF01907.14 gi|57641630|ref|YP_184108.1| - 0.01 15.6 2.9 0.01 15.6 2.0 1.5 2 0 0 2 2 2 0 Ribosomal protein L37e zinc_ribbon_2 PF13240.1 gi|57641630|ref|YP_184108.1| - 0.011 15.1 2.7 0.15 11.6 0.3 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|57641630|ref|YP_184108.1| - 0.012 14.8 4.4 0.055 12.6 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-NADH-PPase PF09297.6 gi|57641630|ref|YP_184108.1| - 0.012 15.1 7.9 0.02 14.3 0.3 2.3 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain C1_1 PF00130.17 gi|57641630|ref|YP_184108.1| - 0.021 14.5 1.3 0.025 14.3 0.9 1.2 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) GCC2_GCC3 PF07699.8 gi|57641630|ref|YP_184108.1| - 0.024 14.2 0.5 0.035 13.6 0.3 1.3 1 0 0 1 1 1 0 GCC2 and GCC3 OrfB_Zn_ribbon PF07282.6 gi|57641630|ref|YP_184108.1| - 0.044 13.4 2.7 0.055 13.1 1.9 1.3 1 1 0 1 1 1 0 Putative transposase DNA-binding domain Zn_Tnp_IS1595 PF12760.2 gi|57641630|ref|YP_184108.1| - 0.1 12.3 5.5 0.13 12.0 3.5 1.5 1 1 0 1 1 1 0 Transposase zinc-ribbon domain UPF0547 PF10571.4 gi|57641630|ref|YP_184108.1| - 0.2 11.3 3.7 0.71 9.6 0.3 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 DUF2082 PF09855.4 gi|57641630|ref|YP_184108.1| - 0.31 10.9 1.9 1.4 8.8 0.2 2.2 1 1 1 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) zf-FPG_IleRS PF06827.9 gi|57641630|ref|YP_184108.1| - 0.33 10.6 0.2 0.33 10.6 0.2 2.1 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS Nudix_N_2 PF14803.1 gi|57641630|ref|YP_184108.1| - 0.35 10.5 6.8 4.6 7.0 4.7 2.1 1 1 0 1 1 1 0 Nudix N-terminal Rubredoxin PF00301.15 gi|57641630|ref|YP_184108.1| - 2.6 7.9 6.8 2.2 8.2 0.4 2.3 1 1 1 2 2 2 0 Rubredoxin Ribosomal_S24e PF01282.14 gi|57641631|ref|YP_184109.1| - 3.8e-28 97.0 0.0 4.7e-28 96.8 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S24e DUF359 PF04019.7 gi|57641632|ref|YP_184110.1| - 2.7e-43 146.1 0.1 3.5e-43 145.8 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF359) Glyco_hydro_4 PF02056.11 gi|57641632|ref|YP_184110.1| - 0.029 13.6 0.0 0.041 13.2 0.0 1.1 1 0 0 1 1 1 0 Family 4 glycosyl hydrolase DUF3903 PF13043.1 gi|57641632|ref|YP_184110.1| - 0.043 13.3 0.3 0.14 11.7 0.1 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF3903) DUF1667 PF07892.6 gi|57641632|ref|YP_184110.1| - 0.056 13.1 0.2 0.12 12.0 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1667) Spt4 PF06093.8 gi|57641633|ref|YP_184111.1| - 3.4e-12 46.0 0.1 4.5e-12 45.6 0.0 1.2 1 0 0 1 1 1 1 Spt4/RpoE2 zinc finger RecR PF02132.10 gi|57641633|ref|YP_184111.1| - 0.001 18.4 2.1 0.001 18.4 1.4 1.5 2 0 0 2 2 2 1 RecR protein NRDD PF13597.1 gi|57641633|ref|YP_184111.1| - 0.0062 14.6 0.3 0.0066 14.5 0.2 1.0 1 0 0 1 1 1 1 Anaerobic ribonucleoside-triphosphate reductase Rad50_zn_hook PF04423.9 gi|57641633|ref|YP_184111.1| - 0.024 14.1 0.2 0.14 11.6 0.0 2.0 2 0 0 2 2 2 0 Rad50 zinc hook motif Nop10p PF04135.7 gi|57641633|ref|YP_184111.1| - 0.026 14.2 0.4 0.046 13.4 0.3 1.4 1 0 0 1 1 1 0 Nucleolar RNA-binding protein, Nop10p family DZR PF12773.2 gi|57641633|ref|YP_184111.1| - 0.029 14.2 0.7 0.041 13.7 0.5 1.3 1 0 0 1 1 1 0 Double zinc ribbon PolC_DP2 PF03833.8 gi|57641633|ref|YP_184111.1| - 0.029 12.0 0.1 0.029 12.0 0.1 1.1 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 PHF5 PF03660.9 gi|57641633|ref|YP_184111.1| - 0.081 12.9 0.1 0.081 12.9 0.1 1.2 1 0 0 1 1 1 0 PHF5-like protein Prim_Zn_Ribbon PF08273.7 gi|57641633|ref|YP_184111.1| - 0.15 12.1 0.9 0.15 12.1 0.6 2.1 1 1 1 2 2 2 0 Zinc-binding domain of primase-helicase zf-ribbon_3 PF13248.1 gi|57641633|ref|YP_184111.1| - 0.24 10.6 2.1 2.6 7.3 0.1 2.1 1 1 1 2 2 2 0 zinc-ribbon domain zf-ISL3 PF14690.1 gi|57641633|ref|YP_184111.1| - 0.34 10.9 0.1 0.34 10.9 0.1 2.3 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DUF35_N PF12172.3 gi|57641633|ref|YP_184111.1| - 1.2 9.1 5.8 2.1 8.3 4.0 1.5 1 1 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) RRN7 PF11781.3 gi|57641633|ref|YP_184111.1| - 1.8 8.1 6.7 0.23 10.9 0.4 2.1 1 1 1 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 SHS2_Rpb7-N PF03876.12 gi|57641634|ref|YP_184112.1| - 1.4e-18 66.7 0.1 2.3e-18 66.0 0.0 1.3 1 0 0 1 1 1 1 SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 S1 PF00575.18 gi|57641634|ref|YP_184112.1| - 1.3e-15 57.1 0.8 3.4e-15 55.9 0.6 1.7 1 0 0 1 1 1 1 S1 RNA binding domain RNA_pol_Rbc25 PF08292.7 gi|57641634|ref|YP_184112.1| - 0.013 15.7 0.3 0.025 14.7 0.2 1.6 1 1 0 1 1 1 0 RNA polymerase III subunit Rpc25 Pyrophosphatase PF00719.14 gi|57641635|ref|YP_184113.1| - 2.6e-61 205.6 0.3 3.1e-61 205.4 0.2 1.0 1 0 0 1 1 1 1 Inorganic pyrophosphatase DUF1034 PF06280.7 gi|57641637|ref|YP_184115.1| - 3.4e-06 27.4 0.3 9.2e-06 26.0 0.2 1.7 2 0 0 2 2 2 1 Fn3-like domain (DUF1034) DUF4139 PF13598.1 gi|57641637|ref|YP_184115.1| - 0.018 14.3 0.0 0.028 13.7 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4139) Peptidase_S24 PF00717.18 gi|57641638|ref|YP_184116.1| - 3.3e-11 42.6 0.0 7.3e-11 41.5 0.0 1.6 1 0 0 1 1 1 1 Peptidase S24-like FA_desaturase PF00487.19 gi|57641638|ref|YP_184116.1| - 0.8 9.0 3.9 0.82 9.0 0.1 2.1 2 0 0 2 2 2 0 Fatty acid desaturase DUF1102 PF06510.6 gi|57641639|ref|YP_184117.1| - 3.4e-61 205.3 1.6 4.1e-61 205.0 1.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1102) DUF1102 PF06510.6 gi|57641640|ref|YP_184118.1| - 5e-67 224.2 2.6 5.8e-67 224.0 1.8 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1102) LVIVD PF08309.6 gi|57641640|ref|YP_184118.1| - 0.027 13.4 1.1 0.053 12.5 0.7 1.5 1 0 0 1 1 1 0 LVIVD repeat KduI PF04962.7 gi|57641640|ref|YP_184118.1| - 0.046 12.8 0.1 0.068 12.2 0.1 1.2 1 0 0 1 1 1 0 KduI/IolB family YwiC PF14256.1 gi|57641641|ref|YP_184119.1| - 0.029 14.4 1.0 0.041 13.9 0.7 1.2 1 0 0 1 1 1 0 YwiC-like protein HTH_Crp_2 PF13545.1 gi|57641641|ref|YP_184119.1| - 0.045 13.5 0.0 0.1 12.4 0.0 1.6 1 1 0 1 1 1 0 Crp-like helix-turn-helix domain Cytochrom_B558a PF05038.8 gi|57641641|ref|YP_184119.1| - 0.069 12.7 0.0 0.079 12.5 0.0 1.1 1 0 0 1 1 1 0 Cytochrome Cytochrome b558 alpha-subunit Mrr_N PF14338.1 gi|57641641|ref|YP_184119.1| - 0.1 12.6 0.0 0.23 11.5 0.0 1.6 1 0 0 1 1 1 0 Mrr N-terminal domain DUF3353 PF11833.3 gi|57641641|ref|YP_184119.1| - 0.1 12.0 0.0 0.15 11.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3353) Replic_Relax PF13814.1 gi|57641642|ref|YP_184120.1| - 0.002 18.0 0.0 0.0021 17.9 0.0 1.0 1 0 0 1 1 1 1 Replication-relaxation TrmB PF01978.14 gi|57641642|ref|YP_184120.1| - 0.004 16.8 0.1 0.007 16.0 0.1 1.5 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Penicillinase_R PF03965.11 gi|57641642|ref|YP_184120.1| - 0.011 15.7 0.0 0.013 15.6 0.0 1.0 1 0 0 1 1 1 0 Penicillinase repressor HTH_Crp_2 PF13545.1 gi|57641642|ref|YP_184120.1| - 0.012 15.4 0.1 0.02 14.6 0.0 1.6 1 1 0 1 1 1 0 Crp-like helix-turn-helix domain MarR_2 PF12802.2 gi|57641642|ref|YP_184120.1| - 0.015 14.9 0.2 0.033 13.8 0.1 1.6 1 1 0 1 1 1 0 MarR family DUF977 PF06163.6 gi|57641642|ref|YP_184120.1| - 0.024 14.3 0.1 0.026 14.2 0.1 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF977) GPP34 PF05719.6 gi|57641642|ref|YP_184120.1| - 0.028 14.4 0.0 0.028 14.4 0.0 1.0 1 0 0 1 1 1 0 Golgi phosphoprotein 3 (GPP34) GntR PF00392.16 gi|57641642|ref|YP_184120.1| - 0.045 13.2 0.0 0.067 12.6 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family DUF2313 PF10076.4 gi|57641642|ref|YP_184120.1| - 0.15 11.4 0.0 0.18 11.1 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2313) Epimerase PF01370.16 gi|57641643|ref|YP_184121.1| - 2.4e-54 184.2 0.0 3e-54 183.9 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|57641643|ref|YP_184121.1| - 4.5e-26 91.1 0.0 5.4e-26 90.9 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.12 gi|57641643|ref|YP_184121.1| - 1.1e-19 70.4 0.0 1.4e-19 70.0 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.10 gi|57641643|ref|YP_184121.1| - 2.7e-16 59.3 0.0 2.1e-15 56.3 0.0 1.9 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.1 gi|57641643|ref|YP_184121.1| - 1.8e-15 57.4 0.0 2.5e-15 56.9 0.0 1.3 1 0 0 1 1 1 1 NADH(P)-binding NmrA PF05368.8 gi|57641643|ref|YP_184121.1| - 1.4e-11 44.1 0.0 3.2e-08 33.0 0.0 2.2 2 0 0 2 2 2 2 NmrA-like family NAD_binding_4 PF07993.7 gi|57641643|ref|YP_184121.1| - 2.3e-11 43.1 0.2 7.7e-10 38.1 0.1 2.1 1 1 0 1 1 1 1 Male sterility protein adh_short PF00106.20 gi|57641643|ref|YP_184121.1| - 1.1e-10 41.6 0.0 1.9e-10 40.8 0.0 1.2 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|57641643|ref|YP_184121.1| - 7.7e-06 25.6 0.0 1.6e-05 24.6 0.0 1.5 1 0 0 1 1 1 1 KR domain TrkA_N PF02254.13 gi|57641643|ref|YP_184121.1| - 0.00092 19.2 0.0 0.0015 18.5 0.0 1.4 1 0 0 1 1 1 1 TrkA-N domain Ldh_1_N PF00056.18 gi|57641643|ref|YP_184121.1| - 0.0068 16.2 0.0 0.014 15.2 0.0 1.5 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain NAD_binding_2 PF03446.10 gi|57641643|ref|YP_184121.1| - 0.029 14.1 0.0 0.049 13.4 0.0 1.4 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase Saccharop_dh PF03435.13 gi|57641643|ref|YP_184121.1| - 0.046 12.7 0.0 0.064 12.2 0.0 1.1 1 0 0 1 1 1 0 Saccharopine dehydrogenase NTP_transf_2 PF01909.18 gi|57641644|ref|YP_184122.1| - 1.6e-06 28.3 0.2 2.6e-06 27.6 0.1 1.3 1 1 0 1 1 1 1 Nucleotidyltransferase domain DUF86 PF01934.12 gi|57641645|ref|YP_184123.1| - 8.6e-32 109.2 4.9 1.1e-31 108.9 3.4 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF86 NTase_sub_bind PF08780.6 gi|57641645|ref|YP_184123.1| - 0.11 12.2 1.9 0.16 11.7 1.3 1.4 1 1 0 1 1 1 0 Nucleotidyltransferase substrate binding protein like NTP_transferase PF00483.18 gi|57641646|ref|YP_184124.1| - 6e-36 124.0 0.0 7.2e-36 123.7 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|57641646|ref|YP_184124.1| - 4.1e-12 46.4 0.0 5.2e-12 46.1 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.19 gi|57641646|ref|YP_184124.1| - 7.4e-06 25.2 1.3 0.0078 15.6 0.2 3.2 2 1 1 3 3 3 2 Bacterial transferase hexapeptide (six repeats) DUF226 PF02890.9 gi|57641646|ref|YP_184124.1| - 0.11 12.2 0.0 0.19 11.4 0.0 1.3 1 0 0 1 1 1 0 Borrelia family of unknown function DUF226 Polysacc_synt PF01943.12 gi|57641647|ref|YP_184125.1| - 1.6e-58 198.1 26.1 1.6e-58 198.1 9.3 2.0 2 0 0 2 2 2 2 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.1 gi|57641647|ref|YP_184125.1| - 1e-16 61.0 6.2 1e-16 61.0 4.3 3.5 3 1 1 4 4 4 1 Polysaccharide biosynthesis C-terminal domain Polysacc_synt_3 PF13440.1 gi|57641647|ref|YP_184125.1| - 5e-10 39.2 11.4 5e-10 39.2 7.9 2.2 2 0 0 2 2 2 2 Polysaccharide biosynthesis protein MVIN PF03023.9 gi|57641647|ref|YP_184125.1| - 6e-08 31.5 18.0 6.5e-07 28.1 12.5 2.2 1 1 0 1 1 1 1 MviN-like protein MatE PF01554.13 gi|57641647|ref|YP_184125.1| - 0.00084 18.9 6.0 0.00084 18.9 4.2 2.9 3 1 0 3 3 3 1 MatE DUF4536 PF15055.1 gi|57641647|ref|YP_184125.1| - 0.21 11.6 1.9 1.2 9.2 1.3 2.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4536) Glycos_transf_1 PF00534.15 gi|57641648|ref|YP_184126.1| - 8.7e-17 61.0 0.3 5.9e-16 58.3 0.0 2.4 2 1 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|57641648|ref|YP_184126.1| - 1.1e-07 32.0 0.0 7.1e-07 29.4 0.0 2.3 3 0 0 3 3 3 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|57641648|ref|YP_184126.1| - 0.005 17.0 0.0 0.012 15.9 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|57641648|ref|YP_184126.1| - 0.0059 16.3 0.0 0.059 13.0 0.0 2.3 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glycos_transf_2 PF00535.21 gi|57641649|ref|YP_184127.1| - 9.5e-36 123.0 0.3 2.3e-35 121.7 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|57641649|ref|YP_184127.1| - 2.3e-16 60.3 0.0 3e-16 59.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|57641649|ref|YP_184127.1| - 3.5e-11 42.7 0.0 5.4e-11 42.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|57641649|ref|YP_184127.1| - 8.6e-06 25.9 0.1 1.4e-05 25.2 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyphos_transf PF04464.9 gi|57641650|ref|YP_184128.1| - 1.4e-92 310.3 0.3 1.6e-92 310.1 0.2 1.0 1 0 0 1 1 1 1 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase IspD PF01128.14 gi|57641651|ref|YP_184129.1| - 1.3e-34 119.6 0.0 1.6e-34 119.3 0.0 1.0 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase NTP_transf_3 PF12804.2 gi|57641651|ref|YP_184129.1| - 1.8e-06 28.1 0.0 2.1e-06 27.8 0.0 1.3 1 1 0 1 1 1 1 MobA-like NTP transferase domain NTP_transferase PF00483.18 gi|57641651|ref|YP_184129.1| - 0.093 12.0 0.0 0.13 11.5 0.0 1.2 1 0 0 1 1 1 0 Nucleotidyl transferase Glycos_transf_2 PF00535.21 gi|57641652|ref|YP_184130.1| - 1.6e-32 112.5 0.0 2.1e-32 112.1 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|57641652|ref|YP_184130.1| - 8.9e-22 78.0 0.0 6.6e-21 75.1 0.0 2.0 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|57641652|ref|YP_184130.1| - 1.9e-17 63.2 0.0 3e-17 62.6 0.0 1.3 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|57641652|ref|YP_184130.1| - 0.0019 17.9 0.3 0.0066 16.1 0.2 1.8 1 1 0 1 1 1 1 Glycosyl transferase family group 2 STT3 PF02516.9 gi|57641653|ref|YP_184131.1| - 2.7e-55 188.2 32.4 2.7e-55 188.2 22.5 1.7 2 0 0 2 2 2 1 Oligosaccharyl transferase STT3 subunit Polysacc_synt_3 PF13440.1 gi|57641654|ref|YP_184132.1| - 1.6e-17 63.7 24.7 1.6e-17 63.7 17.1 2.3 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt PF01943.12 gi|57641654|ref|YP_184132.1| - 3.8e-17 62.4 27.0 3.8e-17 62.4 18.7 2.4 1 1 1 2 2 2 1 Polysaccharide biosynthesis protein MatE PF01554.13 gi|57641654|ref|YP_184132.1| - 2.9e-07 30.2 32.2 2.6e-06 27.1 7.1 3.4 2 2 1 3 3 3 2 MatE Glycos_transf_2 PF00535.21 gi|57641655|ref|YP_184133.1| - 2e-34 118.6 0.1 2.8e-34 118.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|57641655|ref|YP_184133.1| - 1.1e-16 61.3 0.0 1.5e-16 60.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|57641655|ref|YP_184133.1| - 1.8e-09 37.0 0.0 2.9e-09 36.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.1 gi|57641655|ref|YP_184133.1| - 0.0024 17.2 0.0 0.0067 15.7 0.0 1.7 1 1 1 2 2 2 1 Glycosyl transferase family 21 Glyco_tranf_2_4 PF13704.1 gi|57641655|ref|YP_184133.1| - 0.044 14.0 0.0 0.078 13.3 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase family 2 Glycos_transf_1 PF00534.15 gi|57641656|ref|YP_184134.1| - 1.8e-34 118.6 0.1 3.2e-34 117.8 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|57641656|ref|YP_184134.1| - 4.6e-15 55.7 0.0 8e-15 54.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.1 gi|57641656|ref|YP_184134.1| - 6.7e-11 42.4 0.0 1.1e-10 41.7 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|57641656|ref|YP_184134.1| - 5.3e-09 36.2 0.0 1.2e-08 35.0 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|57641656|ref|YP_184134.1| - 1.9e-06 28.1 0.0 3.6e-05 23.9 0.0 2.2 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.1 gi|57641656|ref|YP_184134.1| - 0.00085 19.1 0.3 0.0026 17.5 0.2 1.9 1 1 1 2 2 2 1 Glycosyl transferase 4-like Glycos_transf_2 PF00535.21 gi|57641657|ref|YP_184135.1| - 1.3e-33 116.0 2.2 2.7e-33 115.0 0.3 2.0 1 1 1 2 2 2 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|57641657|ref|YP_184135.1| - 4.5e-16 59.3 0.0 1.1e-15 58.0 0.0 1.7 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|57641657|ref|YP_184135.1| - 7.8e-14 51.4 8.7 1.7e-13 50.2 1.0 2.5 3 0 0 3 3 3 2 Glycosyltransferase like family 2 Glyco_tranf_2_5 PF13712.1 gi|57641657|ref|YP_184135.1| - 7e-05 22.1 3.6 0.087 12.0 0.7 2.5 2 1 1 3 3 3 2 Glycosyltransferase like family Glyco_tranf_2_4 PF13704.1 gi|57641657|ref|YP_184135.1| - 0.00023 21.4 0.0 0.0006 20.0 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_trans_2_3 PF13632.1 gi|57641657|ref|YP_184135.1| - 0.0006 19.5 0.0 0.0091 15.7 0.0 2.0 1 1 0 1 1 1 1 Glycosyl transferase family group 2 Glycos_transf_1 PF00534.15 gi|57641658|ref|YP_184136.1| - 6.1e-28 97.3 0.5 9.1e-28 96.8 0.4 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|57641658|ref|YP_184136.1| - 1.2e-16 61.0 0.0 2.2e-16 60.2 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|57641658|ref|YP_184136.1| - 3.6e-10 39.8 0.0 7.5e-10 38.8 0.0 1.5 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.1 gi|57641658|ref|YP_184136.1| - 9.3e-09 35.4 0.0 2.6e-08 33.9 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|57641658|ref|YP_184136.1| - 9.4e-06 25.8 0.0 1.5e-05 25.1 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain DUF1351 PF07083.6 gi|57641658|ref|YP_184136.1| - 0.012 15.2 0.1 0.024 14.2 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1351) Peripla_BP_4 PF13407.1 gi|57641658|ref|YP_184136.1| - 0.053 12.8 0.0 0.098 11.9 0.0 1.3 1 0 0 1 1 1 0 Periplasmic binding protein domain Glyco_trans_4_2 PF13477.1 gi|57641658|ref|YP_184136.1| - 0.09 12.6 0.0 0.53 10.1 0.0 2.1 2 0 0 2 2 2 0 Glycosyl transferase 4-like AAA_11 PF13086.1 gi|57641659|ref|YP_184137.1| - 0.17 11.4 0.0 0.22 11.0 0.0 1.2 1 0 0 1 1 1 0 AAA domain CBM_6 PF03422.10 gi|57641660|ref|YP_184138.1| - 0.011 15.8 0.1 2 8.6 0.0 2.6 2 0 0 2 2 2 0 Carbohydrate binding module (family 6) ARD PF03079.9 gi|57641660|ref|YP_184138.1| - 0.068 13.1 0.5 0.19 11.6 0.1 1.9 2 0 0 2 2 2 0 ARD/ARD' family UPF0564 PF10595.4 gi|57641661|ref|YP_184139.1| - 0.13 11.1 0.2 0.23 10.3 0.1 1.3 1 0 0 1 1 1 0 Uncharacterised protein family UPF0564 Uso1_p115_C PF04871.8 gi|57641662|ref|YP_184140.1| - 0.074 12.9 0.0 0.089 12.7 0.0 1.1 1 0 0 1 1 1 0 Uso1 / p115 like vesicle tethering protein, C terminal region DUF4138 PF13595.1 gi|57641663|ref|YP_184141.1| - 0.032 13.1 0.0 0.052 12.5 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4138) Na_H_Exchanger PF00999.16 gi|57641663|ref|YP_184141.1| - 0.69 8.3 11.5 0.26 9.7 2.9 2.3 1 1 1 2 2 2 0 Sodium/hydrogen exchanger family PMT_2 PF13231.1 gi|57641664|ref|YP_184142.1| - 3.9e-09 36.6 10.2 3.9e-09 36.6 7.1 2.1 1 1 1 2 2 2 1 Dolichyl-phosphate-mannose-protein mannosyltransferase Glycos_transf_1 PF00534.15 gi|57641666|ref|YP_184144.1| - 3.5e-39 133.9 0.0 6.6e-39 133.0 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|57641666|ref|YP_184144.1| - 2.8e-24 85.7 0.0 5.3e-24 84.9 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|57641666|ref|YP_184144.1| - 1.1e-13 51.3 0.0 1.6e-13 50.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_2 PF13477.1 gi|57641666|ref|YP_184144.1| - 1.2e-13 51.1 0.1 2.2e-13 50.2 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.1 gi|57641666|ref|YP_184144.1| - 2.5e-10 40.4 0.0 5.5e-10 39.3 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|57641666|ref|YP_184144.1| - 5.4e-09 36.3 0.0 1.1e-08 35.3 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glycos_transf_2 PF00535.21 gi|57641667|ref|YP_184145.1| - 3.3e-25 88.7 0.0 5.2e-25 88.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|57641667|ref|YP_184145.1| - 1.3e-09 38.2 0.0 1.9e-09 37.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|57641667|ref|YP_184145.1| - 0.013 14.5 0.0 0.018 14.1 0.0 1.1 1 0 0 1 1 1 0 Glycosyltransferase like family 2 Glyco_transf_7N PF13733.1 gi|57641667|ref|YP_184145.1| - 0.03 13.6 0.0 0.066 12.5 0.0 1.5 1 0 0 1 1 1 0 N-terminal region of glycosyl transferase group 7 DUF456 PF04306.8 gi|57641667|ref|YP_184145.1| - 0.043 13.8 0.6 0.043 13.8 0.4 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF456) Glutaredoxin PF00462.19 gi|57641667|ref|YP_184145.1| - 0.058 13.3 0.0 0.13 12.3 0.0 1.5 1 0 0 1 1 1 0 Glutaredoxin Glyco_tranf_2_4 PF13704.1 gi|57641667|ref|YP_184145.1| - 0.099 12.9 0.0 0.17 12.2 0.0 1.3 1 0 0 1 1 1 0 Glycosyl transferase family 2 Glyco_transf_21 PF13506.1 gi|57641667|ref|YP_184145.1| - 0.12 11.6 0.0 0.33 10.2 0.0 1.7 2 0 0 2 2 2 0 Glycosyl transferase family 21 Glycos_transf_1 PF00534.15 gi|57641668|ref|YP_184146.1| - 3.7e-38 130.6 0.0 4.9e-38 130.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|57641668|ref|YP_184146.1| - 7.6e-19 68.1 0.0 1.4e-18 67.2 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.1 gi|57641668|ref|YP_184146.1| - 1.1e-17 64.4 0.1 3.2e-17 62.9 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|57641668|ref|YP_184146.1| - 1.2e-14 54.7 0.1 7.3e-14 52.2 0.0 2.0 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Hydrolase_6 PF13344.1 gi|57641669|ref|YP_184147.1| - 8.7e-30 102.6 0.0 1.3e-28 98.8 0.0 2.3 2 1 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|57641669|ref|YP_184147.1| - 5.5e-18 64.4 0.2 3.2e-17 61.9 0.0 2.3 3 0 0 3 3 3 1 HAD-hyrolase-like Hydrolase PF00702.21 gi|57641669|ref|YP_184147.1| - 6.9e-10 39.6 0.0 1.1e-07 32.5 0.0 2.5 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|57641669|ref|YP_184147.1| - 8.9e-08 32.5 0.2 0.00053 20.2 0.0 2.9 2 1 1 3 3 3 2 Haloacid dehalogenase-like hydrolase PGP_phosphatase PF09419.5 gi|57641669|ref|YP_184147.1| - 0.002 17.4 0.0 0.0045 16.3 0.0 1.7 1 0 0 1 1 1 1 Mitochondrial PGP phosphatase Rubrerythrin PF02915.12 gi|57641670|ref|YP_184148.1| - 1.2e-09 38.6 7.9 1.6e-06 28.4 1.1 2.5 1 1 0 2 2 2 2 Rubrerythrin COQ7 PF03232.8 gi|57641670|ref|YP_184148.1| - 0.012 15.1 0.3 3.7 7.0 0.0 2.5 1 1 2 3 3 3 0 Ubiquinone biosynthesis protein COQ7 Ribonuc_red_lgC PF02867.10 gi|57641671|ref|YP_184149.1| - 3e-149 498.0 0.0 1.2e-99 334.3 0.0 3.4 3 0 0 3 3 3 3 Ribonucleotide reductase, barrel domain Endonuc_subdom PF09062.5 gi|57641671|ref|YP_184149.1| - 3.9e-57 191.0 5.0 3.9e-57 191.0 3.5 2.8 2 0 0 2 2 2 1 PI-PfuI Endonuclease subdomain Stirrup PF09061.1 gi|57641671|ref|YP_184149.1| - 1.3e-49 166.0 0.4 3.6e-49 164.5 0.3 1.9 1 0 0 1 1 1 1 Stirrup LAGLIDADG_3 PF14528.1 gi|57641671|ref|YP_184149.1| - 2.9e-44 149.1 11.3 5.3e-22 77.8 0.3 5.1 5 0 0 5 5 5 4 LAGLIDADG-like domain Ribonuc_red_lgN PF00317.16 gi|57641671|ref|YP_184149.1| - 9.2e-29 99.0 0.0 3.2e-28 97.3 0.0 2.0 1 0 0 1 1 1 1 Ribonucleotide reductase, all-alpha domain ATP-cone PF03477.11 gi|57641671|ref|YP_184149.1| - 2e-23 82.6 1.5 7.9e-23 80.7 1.1 2.1 1 0 0 1 1 1 1 ATP cone domain Intein_splicing PF14890.1 gi|57641671|ref|YP_184149.1| - 6.2e-20 71.3 0.0 5.3e-15 55.1 0.0 4.1 3 2 0 3 3 3 2 Intein splicing domain Hom_end PF05204.9 gi|57641671|ref|YP_184149.1| - 5.5e-09 35.9 0.1 1.4e-05 25.0 0.0 3.7 4 0 0 4 4 4 1 Homing endonuclease LAGLIDADG_WhiA PF14527.1 gi|57641671|ref|YP_184149.1| - 7.6e-06 25.7 3.2 0.24 11.2 0.0 4.5 5 0 0 5 5 5 2 WhiA LAGLIDADG-like domain PT-HINT PF07591.6 gi|57641671|ref|YP_184149.1| - 0.00053 19.8 2.3 0.11 12.4 0.2 4.2 4 0 0 4 4 4 1 Pretoxin HINT domain LAGLIDADG_2 PF03161.8 gi|57641671|ref|YP_184149.1| - 0.0015 18.5 0.1 1 9.2 0.0 2.9 2 0 0 2 2 2 2 LAGLIDADG DNA endonuclease family Pribosyltran PF00156.22 gi|57641672|ref|YP_184150.1| - 3.3e-24 85.0 0.6 3.8e-24 84.8 0.4 1.0 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|57641672|ref|YP_184150.1| - 3.4e-06 26.4 0.1 4.2e-06 26.1 0.1 1.1 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.1 gi|57641672|ref|YP_184150.1| - 0.0054 16.0 0.0 0.0093 15.2 0.0 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase TRAM PF01938.15 gi|57641672|ref|YP_184150.1| - 0.053 13.3 0.9 0.11 12.2 0.2 1.8 2 0 0 2 2 2 0 TRAM domain DUF2088 PF09861.4 gi|57641672|ref|YP_184150.1| - 0.059 12.3 0.3 0.073 12.0 0.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF2088) MGAT2 PF05060.9 gi|57641672|ref|YP_184150.1| - 0.092 11.6 0.0 0.12 11.3 0.0 1.1 1 0 0 1 1 1 0 N-acetylglucosaminyltransferase II (MGAT2) LigT_PEase PF02834.11 gi|57641673|ref|YP_184151.1| - 4.3e-38 129.1 0.3 7.1e-22 77.1 0.1 2.0 2 0 0 2 2 2 2 LigT like Phosphoesterase AKAP7_NLS PF10469.4 gi|57641673|ref|YP_184151.1| - 9.1e-19 67.9 0.0 1.1e-18 67.7 0.0 1.0 1 0 0 1 1 1 1 AKAP7 2'5' RNA ligase-like domain 2_5_RNA_ligase2 PF13563.1 gi|57641673|ref|YP_184151.1| - 2.9e-16 59.5 0.0 3.6e-16 59.2 0.0 1.1 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily GH3 PF03321.8 gi|57641673|ref|YP_184151.1| - 0.0048 15.4 0.1 0.006 15.1 0.0 1.2 1 0 0 1 1 1 1 GH3 auxin-responsive promoter HVSL PF09749.4 gi|57641673|ref|YP_184151.1| - 0.0054 15.7 0.0 0.11 11.4 0.1 2.0 1 1 1 2 2 2 1 Uncharacterised conserved protein NIR_SIR_ferr PF03460.12 gi|57641673|ref|YP_184151.1| - 0.01 15.4 0.0 0.031 13.9 0.0 1.8 1 0 0 1 1 1 0 Nitrite/Sulfite reductase ferredoxin-like half domain Ribosomal_L1 PF00687.16 gi|57641673|ref|YP_184151.1| - 0.012 15.0 0.0 0.018 14.3 0.0 1.5 1 1 0 1 1 1 0 Ribosomal protein L1p/L10e family DUF217 PF02697.9 gi|57641673|ref|YP_184151.1| - 0.054 13.7 5.0 0.59 10.4 1.1 2.9 2 1 0 2 2 2 0 Uncharacterized ACR, COG1753 MreB_Mbl PF06723.8 gi|57641673|ref|YP_184151.1| - 0.066 11.8 0.2 0.074 11.6 0.1 1.2 1 0 0 1 1 1 0 MreB/Mbl protein DUF1045 PF06299.7 gi|57641673|ref|YP_184151.1| - 0.077 12.6 0.0 0.17 11.5 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1045) PG_binding_2 PF08823.6 gi|57641673|ref|YP_184151.1| - 0.1 12.6 0.4 4.9 7.3 0.0 3.0 2 1 1 3 3 3 0 Putative peptidoglycan binding domain CAP_GLY PF01302.20 gi|57641673|ref|YP_184151.1| - 0.11 12.2 0.0 0.36 10.5 0.0 1.8 1 1 0 1 1 1 0 CAP-Gly domain DUF2361 PF10153.4 gi|57641673|ref|YP_184151.1| - 0.19 11.9 1.7 0.19 11.9 0.2 1.7 2 0 0 2 2 2 0 Uncharacterised conserved protein (DUF2361) TraC PF07820.7 gi|57641673|ref|YP_184151.1| - 1.1 9.5 4.5 0.26 11.5 0.3 2.1 3 0 0 3 3 3 0 TraC-like protein DUF632 PF04782.7 gi|57641674|ref|YP_184152.1| - 0.015 14.4 0.2 0.023 13.7 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF632) DUF4200 PF13863.1 gi|57641674|ref|YP_184152.1| - 0.051 13.5 6.2 0.15 11.9 4.2 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4200) PQQ_2 PF13360.1 gi|57641675|ref|YP_184153.1| - 3.3e-07 30.0 1.5 0.00064 19.2 0.1 2.5 1 1 2 3 3 3 2 PQQ-like domain PQQ_3 PF13570.1 gi|57641675|ref|YP_184153.1| - 0.055 13.7 8.7 27 5.1 0.3 5.1 4 1 1 5 5 5 0 PQQ-like domain tRNA_NucTransf2 PF09249.6 gi|57641676|ref|YP_184154.1| - 2e-38 130.7 0.0 3.5e-38 129.9 0.0 1.4 1 0 0 1 1 1 1 tRNA nucleotidyltransferase, second domain NTP_transf_2 PF01909.18 gi|57641676|ref|YP_184154.1| - 2.3e-10 40.6 6.3 8.1e-10 38.9 0.2 3.2 3 0 0 3 3 3 1 Nucleotidyltransferase domain OAS1_C PF10421.4 gi|57641676|ref|YP_184154.1| - 0.014 14.9 0.0 0.024 14.1 0.0 1.3 1 0 0 1 1 1 0 2'-5'-oligoadenylate synthetase 1, domain 2, C-terminus SIS PF01380.17 gi|57641679|ref|YP_184157.1| - 0.12 11.9 0.0 0.16 11.6 0.0 1.1 1 0 0 1 1 1 0 SIS domain PQQ PF01011.16 gi|57641679|ref|YP_184157.1| - 0.14 11.7 0.1 0.24 11.0 0.0 1.3 1 0 0 1 1 1 0 PQQ enzyme repeat EamA PF00892.15 gi|57641680|ref|YP_184158.1| - 1.6e-38 131.6 30.8 8.7e-21 74.2 8.9 2.1 2 0 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|57641680|ref|YP_184158.1| - 2.9e-05 24.2 32.1 0.00025 21.2 4.4 3.5 2 2 1 3 3 3 2 Multidrug resistance efflux transporter TPT PF03151.11 gi|57641680|ref|YP_184158.1| - 0.52 9.9 15.8 3.3 7.3 0.8 3.4 2 2 0 2 2 2 0 Triose-phosphate Transporter family DUF3140 PF11338.3 gi|57641681|ref|YP_184159.1| - 0.15 12.1 0.5 0.38 10.9 0.1 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3140) NTPase_I-T PF01931.13 gi|57641682|ref|YP_184160.1| - 6.8e-59 198.3 0.0 7.6e-59 198.1 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF84 YbaB_DNA_bd PF02575.11 gi|57641682|ref|YP_184160.1| - 0.048 13.5 0.0 0.076 12.9 0.0 1.3 1 0 0 1 1 1 0 YbaB/EbfC DNA-binding family tRNA-synt_1 PF00133.17 gi|57641683|ref|YP_184161.1| - 3.9e-192 639.4 10.0 6.4e-192 638.7 7.0 1.3 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.8 gi|57641683|ref|YP_184161.1| - 2.5e-38 131.2 0.0 7.1e-38 129.7 0.0 1.8 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.6 gi|57641683|ref|YP_184161.1| - 2.6e-27 95.5 8.8 1.7e-10 40.1 0.5 4.0 2 2 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1e PF01406.14 gi|57641683|ref|YP_184161.1| - 1.3e-06 27.8 0.0 0.00027 20.1 0.0 2.4 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1_2 PF13603.1 gi|57641683|ref|YP_184161.1| - 0.0018 17.5 0.0 0.0059 15.9 0.0 1.8 1 1 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 zf-FPG_IleRS PF06827.9 gi|57641683|ref|YP_184161.1| - 2.8 7.6 5.6 0.18 11.4 0.1 1.9 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS Peptidase_C39_2 PF13529.1 gi|57641685|ref|YP_184163.1| - 1.1e-06 29.0 0.4 3.1e-06 27.5 0.2 1.8 1 1 0 1 1 1 1 Peptidase_C39 like family PIN PF01850.16 gi|57641686|ref|YP_184164.1| - 5.6e-16 58.9 0.0 7.3e-16 58.5 0.0 1.1 1 0 0 1 1 1 1 PIN domain DUF217 PF02697.9 gi|57641687|ref|YP_184165.1| - 5.8e-24 84.1 2.1 6.2e-24 84.0 1.4 1.0 1 0 0 1 1 1 1 Uncharacterized ACR, COG1753 DUF4635 PF15466.1 gi|57641687|ref|YP_184165.1| - 0.035 13.4 0.5 0.039 13.2 0.4 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4635) DegV PF02645.11 gi|57641687|ref|YP_184165.1| - 0.082 11.9 0.1 0.097 11.7 0.0 1.0 1 0 0 1 1 1 0 Uncharacterised protein, DegV family COG1307 RHH_1 PF01402.16 gi|57641687|ref|YP_184165.1| - 0.19 11.6 1.8 0.62 10.0 0.0 2.1 2 0 0 2 2 2 0 Ribbon-helix-helix protein, copG family DUF835 PF05763.7 gi|57641688|ref|YP_184166.1| - 9.9e-39 132.0 0.0 2.2e-38 130.8 0.0 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF835) KAP_NTPase PF07693.9 gi|57641688|ref|YP_184166.1| - 0.12 11.3 0.0 0.17 10.8 0.0 1.1 1 0 0 1 1 1 0 KAP family P-loop domain Glyco_hydro_42 PF02449.10 gi|57641689|ref|YP_184167.1| - 3.4e-72 243.6 0.2 4.4e-72 243.2 0.1 1.1 1 0 0 1 1 1 1 Beta-galactosidase Glyco_hydro_35 PF01301.14 gi|57641689|ref|YP_184167.1| - 3.7e-47 161.2 0.6 3.4e-39 135.0 0.0 2.7 3 0 0 3 3 3 2 Glycosyl hydrolases family 35 Glyco_hydro_42M PF08532.5 gi|57641689|ref|YP_184167.1| - 5e-24 84.6 0.0 1.2e-23 83.4 0.0 1.7 2 0 0 2 2 2 1 Beta-galactosidase trimerisation domain ThuA PF06283.6 gi|57641689|ref|YP_184167.1| - 0.08 12.6 0.1 0.18 11.4 0.0 1.5 2 0 0 2 2 2 0 Trehalose utilisation SIS PF01380.17 gi|57641690|ref|YP_184168.1| - 2.3e-17 62.8 0.0 1.2e-07 31.3 0.0 2.4 2 1 0 2 2 2 2 SIS domain ABC_tran PF00005.22 gi|57641691|ref|YP_184169.1| - 4.2e-30 104.8 0.0 5.5e-30 104.4 0.0 1.1 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|57641691|ref|YP_184169.1| - 2.9e-21 75.5 0.1 4.7e-21 74.9 0.1 1.3 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_22 PF13401.1 gi|57641691|ref|YP_184169.1| - 3.3e-06 27.2 0.3 7.4e-05 22.9 0.2 2.1 1 1 0 1 1 1 1 AAA domain AAA_21 PF13304.1 gi|57641691|ref|YP_184169.1| - 3.6e-06 27.1 0.4 0.069 13.1 0.0 2.2 1 1 1 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|57641691|ref|YP_184169.1| - 0.0013 18.8 0.0 0.0036 17.3 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_18 PF13238.1 gi|57641691|ref|YP_184169.1| - 0.0017 18.6 0.0 0.0028 17.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|57641691|ref|YP_184169.1| - 0.0019 17.6 0.0 0.0038 16.7 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|57641691|ref|YP_184169.1| - 0.0042 16.1 0.1 0.0057 15.7 0.0 1.1 1 0 0 1 1 1 1 AAA ATPase domain UPF0079 PF02367.12 gi|57641691|ref|YP_184169.1| - 0.027 14.0 0.0 0.047 13.3 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 Mg_chelatase PF01078.16 gi|57641691|ref|YP_184169.1| - 0.027 13.6 0.0 0.044 12.9 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI SMC_N PF02463.14 gi|57641691|ref|YP_184169.1| - 0.038 13.2 0.0 0.11 11.7 0.0 1.7 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain DUF258 PF03193.11 gi|57641691|ref|YP_184169.1| - 0.045 12.9 0.2 0.098 11.8 0.1 1.5 1 1 0 1 1 1 0 Protein of unknown function, DUF258 MobB PF03205.9 gi|57641691|ref|YP_184169.1| - 0.051 13.2 0.0 0.097 12.3 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B T2SE PF00437.15 gi|57641691|ref|YP_184169.1| - 0.071 11.9 0.0 0.11 11.4 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein Gtr1_RagA PF04670.7 gi|57641691|ref|YP_184169.1| - 0.077 12.1 0.1 0.11 11.5 0.0 1.2 1 0 0 1 1 1 0 Gtr1/RagA G protein conserved region AAA PF00004.24 gi|57641691|ref|YP_184169.1| - 0.091 12.9 0.0 0.44 10.7 0.0 1.9 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.1 gi|57641691|ref|YP_184169.1| - 0.1 11.9 0.2 1.1 8.5 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.1 gi|57641691|ref|YP_184169.1| - 0.11 12.3 0.0 0.4 10.4 0.0 1.9 2 0 0 2 2 2 0 Part of AAA domain PRK PF00485.13 gi|57641691|ref|YP_184169.1| - 0.11 11.9 0.0 0.2 11.2 0.0 1.4 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family KaiC PF06745.8 gi|57641691|ref|YP_184169.1| - 0.15 11.1 0.2 0.26 10.3 0.1 1.3 1 0 0 1 1 1 0 KaiC AAA_23 PF13476.1 gi|57641691|ref|YP_184169.1| - 0.16 12.2 0.7 0.3 11.3 0.5 1.4 1 1 0 1 1 1 0 AAA domain NB-ARC PF00931.17 gi|57641691|ref|YP_184169.1| - 0.18 10.6 0.0 0.33 9.7 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain ABC_tran PF00005.22 gi|57641692|ref|YP_184170.1| - 4.5e-23 82.0 0.0 6e-23 81.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|57641692|ref|YP_184170.1| - 3.2e-21 75.4 0.2 5.5e-21 74.6 0.1 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|57641692|ref|YP_184170.1| - 2.1e-08 34.4 0.2 7e-07 29.4 0.2 2.1 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|57641692|ref|YP_184170.1| - 1.5e-05 25.1 0.3 3.4e-05 24.0 0.2 1.6 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|57641692|ref|YP_184170.1| - 0.0011 18.3 0.1 0.0021 17.5 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|57641692|ref|YP_184170.1| - 0.0032 16.7 0.1 0.0069 15.6 0.1 1.5 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain FtsK_SpoIIIE PF01580.13 gi|57641692|ref|YP_184170.1| - 0.0043 16.5 0.1 0.012 15.0 0.0 1.7 2 0 0 2 2 2 1 FtsK/SpoIIIE family Miro PF08477.8 gi|57641692|ref|YP_184170.1| - 0.0051 17.2 0.0 0.011 16.2 0.0 1.5 1 0 0 1 1 1 1 Miro-like protein DUF258 PF03193.11 gi|57641692|ref|YP_184170.1| - 0.0074 15.4 0.0 0.011 14.8 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_17 PF13207.1 gi|57641692|ref|YP_184170.1| - 0.008 16.9 0.1 0.016 16.0 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|57641692|ref|YP_184170.1| - 0.0086 15.4 0.1 0.019 14.3 0.0 1.6 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|57641692|ref|YP_184170.1| - 0.011 15.7 0.2 0.043 13.8 0.0 1.8 2 0 0 2 2 2 0 AAA ATPase domain NTPase_1 PF03266.10 gi|57641692|ref|YP_184170.1| - 0.012 15.2 0.8 1.1 8.9 0.0 2.3 2 0 0 2 2 2 0 NTPase ATP-synt_ab PF00006.20 gi|57641692|ref|YP_184170.1| - 0.015 14.7 0.0 0.034 13.6 0.0 1.7 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_15 PF13175.1 gi|57641692|ref|YP_184170.1| - 0.034 13.1 0.1 1.9 7.4 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain Adeno_100 PF02438.11 gi|57641692|ref|YP_184170.1| - 0.058 11.6 0.2 0.076 11.2 0.1 1.0 1 0 0 1 1 1 0 Late 100kD protein ABC_ATPase PF09818.4 gi|57641692|ref|YP_184170.1| - 0.061 11.9 0.2 0.23 9.9 0.0 1.9 2 0 0 2 2 2 0 Predicted ATPase of the ABC class PRK PF00485.13 gi|57641692|ref|YP_184170.1| - 0.063 12.8 0.0 0.1 12.1 0.0 1.4 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family NACHT PF05729.7 gi|57641692|ref|YP_184170.1| - 0.063 12.9 0.0 0.14 11.8 0.0 1.5 1 0 0 1 1 1 0 NACHT domain GTP_EFTU PF00009.22 gi|57641692|ref|YP_184170.1| - 0.063 12.7 0.0 0.12 11.7 0.0 1.4 1 0 0 1 1 1 0 Elongation factor Tu GTP binding domain AAA_23 PF13476.1 gi|57641692|ref|YP_184170.1| - 0.11 12.7 0.5 0.22 11.7 0.0 1.6 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.17 gi|57641692|ref|YP_184170.1| - 0.13 12.4 0.0 0.32 11.1 0.0 1.6 1 0 0 1 1 1 0 RNA helicase MMR_HSR1 PF01926.18 gi|57641692|ref|YP_184170.1| - 0.13 12.1 0.1 0.23 11.4 0.1 1.7 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_10 PF12846.2 gi|57641692|ref|YP_184170.1| - 0.15 11.4 1.1 1.4 8.3 0.0 2.4 2 1 1 3 3 3 0 AAA-like domain AAA_28 PF13521.1 gi|57641692|ref|YP_184170.1| - 0.16 11.8 1.5 13 5.7 0.2 2.2 1 1 1 2 2 2 0 AAA domain AAA PF00004.24 gi|57641692|ref|YP_184170.1| - 0.18 12.0 0.9 2.6 8.2 0.6 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) DUF87 PF01935.12 gi|57641692|ref|YP_184170.1| - 0.22 11.2 1.1 0.77 9.5 0.1 2.0 2 1 0 2 2 2 0 Domain of unknown function DUF87 CbiA PF01656.18 gi|57641692|ref|YP_184170.1| - 0.64 9.3 2.4 6 6.2 0.2 2.1 2 0 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain BPD_transp_1 PF00528.17 gi|57641693|ref|YP_184171.1| - 6.4e-23 81.2 16.8 6.4e-23 81.2 11.6 2.0 2 1 1 3 3 3 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|57641693|ref|YP_184171.1| - 0.00029 20.1 0.2 0.00029 20.1 0.1 3.1 4 0 0 4 4 4 1 N-terminal TM domain of oligopeptide transport permease C DUF423 PF04241.10 gi|57641693|ref|YP_184171.1| - 0.078 12.8 0.5 0.078 12.8 0.3 2.7 2 1 1 3 3 3 0 Protein of unknown function (DUF423) BPD_transp_1 PF00528.17 gi|57641694|ref|YP_184172.1| - 3.9e-43 147.1 14.2 3.9e-43 147.1 9.8 1.8 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_5 PF00496.17 gi|57641695|ref|YP_184173.1| - 3.7e-74 249.8 3.1 3.7e-74 249.8 2.1 1.6 2 0 0 2 2 2 1 Bacterial extracellular solute-binding proteins, family 5 Middle OpuAC PF04069.7 gi|57641695|ref|YP_184173.1| - 9.2e-05 21.9 0.1 0.00023 20.6 0.1 1.6 1 0 0 1 1 1 1 Substrate binding domain of ABC-type glycine betaine transport system SSP160 PF06933.6 gi|57641695|ref|YP_184173.1| - 2.2 6.1 9.3 3.2 5.6 6.4 1.1 1 0 0 1 1 1 0 Special lobe-specific silk protein SSP160 Glyco_hydro_1 PF00232.13 gi|57641696|ref|YP_184174.1| - 2.5e-64 217.1 3.7 9.1e-55 185.6 0.6 2.9 2 1 0 2 2 2 2 Glycosyl hydrolase family 1 DUF217 PF02697.9 gi|57641697|ref|YP_184175.1| - 0.0028 17.8 5.7 0.0052 17.0 3.9 1.5 1 1 0 1 1 1 1 Uncharacterized ACR, COG1753 DUF2969 PF11184.3 gi|57641697|ref|YP_184175.1| - 0.07 13.2 1.3 0.098 12.7 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2969) TraB PF01963.12 gi|57641697|ref|YP_184175.1| - 0.13 11.7 1.2 0.12 11.7 0.8 1.0 1 0 0 1 1 1 0 TraB family BBS1 PF14779.1 gi|57641697|ref|YP_184175.1| - 0.15 11.0 1.2 0.15 11.0 0.8 1.1 1 0 0 1 1 1 0 Ciliary BBSome complex subunit 1 PIN PF01850.16 gi|57641698|ref|YP_184176.1| - 3.2e-07 30.6 2.0 4.3e-07 30.2 1.4 1.2 1 0 0 1 1 1 1 PIN domain ATP_bind_4 PF01902.12 gi|57641698|ref|YP_184176.1| - 0.056 12.7 0.1 0.086 12.1 0.1 1.3 1 0 0 1 1 1 0 ATP-binding region GTP_cyclohydro2 PF00925.15 gi|57641698|ref|YP_184176.1| - 0.083 12.1 0.0 0.12 11.5 0.0 1.2 1 0 0 1 1 1 0 GTP cyclohydrolase II PIG-L PF02585.12 gi|57641699|ref|YP_184177.1| - 1.4e-26 93.4 0.0 2.1e-26 92.9 0.0 1.3 1 0 0 1 1 1 1 GlcNAc-PI de-N-acetylase Glyco_hydro_18 PF00704.23 gi|57641700|ref|YP_184178.1| - 1.8e-114 382.8 9.1 5.3e-110 368.0 3.8 3.1 2 1 1 3 3 3 2 Glycosyl hydrolases family 18 CBM_2 PF00553.14 gi|57641700|ref|YP_184178.1| - 4.3e-15 55.6 13.9 9.9e-08 31.9 1.1 3.1 2 1 1 3 3 3 2 Cellulose binding domain CBM_5_12 PF02839.9 gi|57641700|ref|YP_184178.1| - 4.8e-11 42.0 4.9 4.8e-11 42.0 3.4 3.6 3 0 0 3 3 3 1 Carbohydrate binding domain CBM_5_12_2 PF14600.1 gi|57641700|ref|YP_184178.1| - 8.2e-06 25.3 6.1 1.1e-05 24.9 2.0 2.7 2 0 0 2 2 2 1 Cellulose-binding domain Radical_SAM PF04055.16 gi|57641701|ref|YP_184179.1| - 1.5e-13 51.2 0.1 3.3e-13 50.1 0.0 1.7 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|57641701|ref|YP_184179.1| - 2.1e-07 30.9 0.0 4.2e-07 29.9 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|57641701|ref|YP_184179.1| - 7e-06 26.2 0.0 1.4e-05 25.2 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain RNase_P_Rpp14 PF01900.14 gi|57641702|ref|YP_184180.1| - 6e-28 96.8 0.0 6.8e-28 96.6 0.0 1.0 1 0 0 1 1 1 1 Rpp14/Pop5 family Glyco_transf_5 PF08323.6 gi|57641703|ref|YP_184181.1| - 6.1e-36 124.1 0.0 8.7e-36 123.6 0.0 1.2 1 0 0 1 1 1 1 Starch synthase catalytic domain Glycos_transf_1 PF00534.15 gi|57641703|ref|YP_184181.1| - 8.5e-35 119.7 0.0 1.3e-34 119.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|57641703|ref|YP_184181.1| - 1e-11 45.2 0.0 2.8e-11 43.8 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|57641703|ref|YP_184181.1| - 2.5e-06 27.3 0.4 0.001 18.8 0.0 2.5 1 1 1 2 2 2 2 Glycosyltransferase Family 4 Glyco_trans_4_2 PF13477.1 gi|57641703|ref|YP_184181.1| - 7.5e-05 22.5 0.1 0.00091 19.0 0.0 2.2 1 1 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.1 gi|57641703|ref|YP_184181.1| - 0.0025 18.0 0.0 0.0055 16.9 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Regulator_TrmB PF11495.3 gi|57641704|ref|YP_184182.1| - 3.8e-56 189.6 0.0 5.7e-56 189.1 0.0 1.3 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB TrmB PF01978.14 gi|57641704|ref|YP_184182.1| - 2.4e-25 88.0 0.0 4.2e-25 87.2 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_9 PF08221.6 gi|57641704|ref|YP_184182.1| - 0.0092 15.8 0.0 0.018 14.8 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase III subunit RPC82 helix-turn-helix domain Rrf2 PF02082.15 gi|57641704|ref|YP_184182.1| - 0.018 15.1 0.0 0.042 13.9 0.0 1.7 1 0 0 1 1 1 0 Transcriptional regulator CENP-B_N PF04218.8 gi|57641704|ref|YP_184182.1| - 0.082 12.3 0.0 0.16 11.3 0.0 1.5 1 0 0 1 1 1 0 CENP-B N-terminal DNA-binding domain HTH_IclR PF09339.5 gi|57641704|ref|YP_184182.1| - 0.087 12.4 0.0 0.19 11.3 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain LexA_DNA_bind PF01726.11 gi|57641704|ref|YP_184182.1| - 0.15 11.6 0.0 0.3 10.6 0.0 1.5 1 0 0 1 1 1 0 LexA DNA binding domain Alpha-amylase PF00128.19 gi|57641705|ref|YP_184183.1| - 4.3e-63 213.6 0.0 6.5e-63 213.0 0.0 1.2 1 0 0 1 1 1 1 Alpha amylase, catalytic domain Alpha-amylase_N PF02903.9 gi|57641705|ref|YP_184183.1| - 2.2e-14 53.4 0.1 8.9e-14 51.4 0.1 1.9 2 0 0 2 2 2 1 Alpha amylase, N-terminal ig-like domain SBP_bac_8 PF13416.1 gi|57641706|ref|YP_184184.1| - 1.7e-52 178.9 9.5 2.2e-52 178.5 6.6 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|57641706|ref|YP_184184.1| - 1.9e-44 152.6 16.0 2.9e-44 152.0 11.1 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.1 gi|57641706|ref|YP_184184.1| - 3.6e-09 36.3 1.9 1.3e-06 27.9 0.4 2.2 2 0 0 2 2 2 2 Bacterial extracellular solute-binding protein Mucin PF01456.12 gi|57641706|ref|YP_184184.1| - 0.086 12.6 14.5 0.14 11.9 10.1 1.3 1 0 0 1 1 1 0 Mucin-like glycoprotein SSP160 PF06933.6 gi|57641706|ref|YP_184184.1| - 0.6 8.0 6.6 0.82 7.5 4.6 1.1 1 0 0 1 1 1 0 Special lobe-specific silk protein SSP160 Myco_19_kDa PF05481.7 gi|57641706|ref|YP_184184.1| - 1.7 8.4 9.2 0.76 9.5 1.8 2.1 1 1 1 2 2 2 0 Mycobacterium 19 kDa lipoprotein antigen BPD_transp_1 PF00528.17 gi|57641707|ref|YP_184185.1| - 4.6e-16 58.8 18.3 4.6e-16 58.8 12.7 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|57641708|ref|YP_184186.1| - 3.7e-17 62.4 27.3 1.7e-16 60.2 16.0 2.6 2 1 1 3 3 3 1 Binding-protein-dependent transport system inner membrane component DUF843 PF05814.6 gi|57641708|ref|YP_184186.1| - 0.0053 16.5 0.6 0.0053 16.5 0.4 3.1 3 0 0 3 3 3 1 Baculovirus protein of unknown function (DUF843) DUF912 PF06024.7 gi|57641708|ref|YP_184186.1| - 0.069 13.2 0.4 0.069 13.2 0.2 2.2 3 0 0 3 3 3 0 Nucleopolyhedrovirus protein of unknown function (DUF912) Mem_trans PF03547.13 gi|57641708|ref|YP_184186.1| - 4.8 5.3 9.0 8.1 4.6 0.5 2.4 2 0 0 2 2 2 0 Membrane transport protein Glyco_hydro_57 PF03065.10 gi|57641709|ref|YP_184187.1| - 1.8e-126 421.8 10.0 2.6e-126 421.3 6.9 1.3 1 0 0 1 1 1 1 Glycosyl hydrolase family 57 DUF2223 PF09985.4 gi|57641709|ref|YP_184187.1| - 1.2e-88 296.3 0.3 1.2e-88 296.3 0.2 2.2 3 0 0 3 3 3 1 Domain of unknown function (DUF2223) ABC_tran PF00005.22 gi|57641710|ref|YP_184188.1| - 2.1e-32 112.2 0.0 3.6e-32 111.5 0.0 1.4 1 0 0 1 1 1 1 ABC transporter TOBE PF03459.12 gi|57641710|ref|YP_184188.1| - 1.2e-09 38.1 0.2 2.1e-07 30.9 0.1 3.2 3 0 0 3 3 3 1 TOBE domain AAA_21 PF13304.1 gi|57641710|ref|YP_184188.1| - 8.9e-09 35.7 0.0 0.00026 21.0 0.0 2.2 1 1 0 2 2 2 2 AAA domain TOBE_2 PF08402.5 gi|57641710|ref|YP_184188.1| - 1e-06 28.6 0.2 4.9e-06 26.4 0.0 2.1 2 0 0 2 2 2 1 TOBE domain SMC_N PF02463.14 gi|57641710|ref|YP_184188.1| - 0.00024 20.3 0.0 0.0017 17.5 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|57641710|ref|YP_184188.1| - 0.00084 19.4 0.1 0.007 16.5 0.0 2.3 3 0 0 3 3 2 1 AAA domain AAA_15 PF13175.1 gi|57641710|ref|YP_184188.1| - 0.0022 17.0 0.0 0.022 13.7 0.0 1.9 2 0 0 2 2 2 1 AAA ATPase domain AAA PF00004.24 gi|57641710|ref|YP_184188.1| - 0.005 17.0 0.0 0.017 15.3 0.0 1.9 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|57641710|ref|YP_184188.1| - 0.0051 16.8 0.1 0.014 15.3 0.0 1.7 2 0 0 2 2 2 1 AAA ATPase domain Rad17 PF03215.10 gi|57641710|ref|YP_184188.1| - 0.0054 15.4 0.0 0.0076 14.9 0.0 1.2 1 0 0 1 1 1 1 Rad17 cell cycle checkpoint protein AAA_10 PF12846.2 gi|57641710|ref|YP_184188.1| - 0.0057 16.1 0.1 0.13 11.6 0.0 2.2 2 0 0 2 2 2 1 AAA-like domain ATP-synt_ab PF00006.20 gi|57641710|ref|YP_184188.1| - 0.0095 15.4 0.0 0.015 14.8 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain AAA_25 PF13481.1 gi|57641710|ref|YP_184188.1| - 0.013 14.9 0.1 0.39 10.0 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.1 gi|57641710|ref|YP_184188.1| - 0.014 14.9 0.0 0.052 13.0 0.0 2.0 2 0 0 2 2 2 0 P-loop containing region of AAA domain DUF258 PF03193.11 gi|57641710|ref|YP_184188.1| - 0.015 14.4 0.0 0.026 13.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 Arch_ATPase PF01637.13 gi|57641710|ref|YP_184188.1| - 0.031 13.9 0.0 0.06 13.0 0.0 1.4 1 0 0 1 1 1 0 Archaeal ATPase AAA_19 PF13245.1 gi|57641710|ref|YP_184188.1| - 0.032 13.9 0.0 0.087 12.5 0.0 1.7 1 0 0 1 1 1 0 Part of AAA domain NACHT PF05729.7 gi|57641710|ref|YP_184188.1| - 0.042 13.4 0.3 0.1 12.2 0.1 1.7 2 0 0 2 2 2 0 NACHT domain AAA_14 PF13173.1 gi|57641710|ref|YP_184188.1| - 0.069 13.0 0.0 0.13 12.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|57641710|ref|YP_184188.1| - 0.08 12.6 0.4 0.29 10.8 0.0 2.0 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_33 PF13671.1 gi|57641710|ref|YP_184188.1| - 0.088 12.6 0.3 0.34 10.7 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.1 gi|57641710|ref|YP_184188.1| - 0.14 12.4 0.0 0.24 11.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|57641710|ref|YP_184188.1| - 0.24 12.2 0.8 0.77 10.5 0.5 2.1 2 1 0 2 2 1 0 AAA domain UPF0146 PF03686.8 gi|57641711|ref|YP_184189.1| - 4.3e-42 142.9 0.0 4.7e-42 142.7 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0146) Methyltransf_23 PF13489.1 gi|57641711|ref|YP_184189.1| - 0.00019 21.1 0.0 0.00021 21.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain TehB PF03848.9 gi|57641711|ref|YP_184189.1| - 0.0007 18.8 0.0 0.00092 18.4 0.0 1.1 1 0 0 1 1 1 1 Tellurite resistance protein TehB ADH_zinc_N PF00107.21 gi|57641711|ref|YP_184189.1| - 0.021 14.3 0.0 0.058 12.9 0.0 1.7 1 1 0 1 1 1 0 Zinc-binding dehydrogenase TrkA_N PF02254.13 gi|57641711|ref|YP_184189.1| - 0.071 13.1 0.0 0.11 12.5 0.0 1.2 1 0 0 1 1 1 0 TrkA-N domain PGM_PMM_I PF02878.11 gi|57641712|ref|YP_184190.1| - 2.2e-38 130.8 0.1 1.1e-37 128.6 0.0 2.0 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.11 gi|57641712|ref|YP_184190.1| - 3.2e-24 85.2 0.1 7e-24 84.1 0.1 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.15 gi|57641712|ref|YP_184190.1| - 1.1e-11 44.5 0.2 7.1e-11 41.9 0.1 2.3 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain PGM_PMM_III PF02880.11 gi|57641712|ref|YP_184190.1| - 0.00011 22.2 0.0 0.00034 20.6 0.0 1.9 2 1 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Lactamase_B_2 PF12706.2 gi|57641713|ref|YP_184191.1| - 5.3e-21 75.0 0.1 6.9e-21 74.6 0.1 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|57641713|ref|YP_184191.1| - 2.6e-08 33.7 1.7 4.8e-08 32.8 1.2 1.4 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.1 gi|57641713|ref|YP_184191.1| - 4.8e-08 32.8 0.0 3.3e-07 30.1 0.0 2.0 1 1 1 2 2 2 1 Beta-lactamase superfamily domain OPT PF03169.10 gi|57641714|ref|YP_184192.1| - 1.2e-108 364.2 50.4 1.4e-108 364.0 35.0 1.0 1 0 0 1 1 1 1 OPT oligopeptide transporter protein PqqD PF05402.7 gi|57641715|ref|YP_184193.1| - 5.8e-18 64.6 0.0 7.2e-18 64.3 0.0 1.2 1 0 0 1 1 1 1 Coenzyme PQQ synthesis protein D (PqqD) Peptidase_M20 PF01546.23 gi|57641716|ref|YP_184194.1| - 2e-34 118.7 0.0 2.4e-34 118.5 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|57641716|ref|YP_184194.1| - 9.1e-21 73.7 0.0 1.8e-20 72.7 0.0 1.5 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M28 PF04389.12 gi|57641716|ref|YP_184194.1| - 4e-05 23.4 0.0 0.00041 20.1 0.0 2.1 2 0 0 2 2 2 1 Peptidase family M28 Serpin PF00079.15 gi|57641717|ref|YP_184195.1| - 2.1e-121 405.5 0.0 2.4e-121 405.3 0.0 1.0 1 0 0 1 1 1 1 Serpin (serine protease inhibitor) Methyltransf_26 PF13659.1 gi|57641719|ref|YP_184197.1| - 4.3e-12 46.0 0.0 6.7e-12 45.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|57641719|ref|YP_184197.1| - 5.3e-10 39.8 0.0 8.3e-10 39.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|57641719|ref|YP_184197.1| - 6.4e-10 38.6 0.0 9.4e-10 38.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.1 gi|57641719|ref|YP_184197.1| - 4.8e-09 35.9 0.0 6.5e-09 35.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_10 PF05971.7 gi|57641719|ref|YP_184197.1| - 4.2e-08 32.6 0.0 1.7e-07 30.7 0.0 1.7 1 1 0 1 1 1 1 Protein of unknown function (DUF890) PrmA PF06325.8 gi|57641719|ref|YP_184197.1| - 9.3e-06 24.9 0.0 1.4e-05 24.3 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_23 PF13489.1 gi|57641719|ref|YP_184197.1| - 1.7e-05 24.5 0.0 0.0002 21.1 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|57641719|ref|YP_184197.1| - 0.00016 22.0 0.0 0.0013 19.1 0.0 2.2 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|57641719|ref|YP_184197.1| - 0.00018 21.7 0.0 0.00036 20.8 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|57641719|ref|YP_184197.1| - 0.00028 20.4 0.0 0.00045 19.7 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) RrnaAD PF00398.15 gi|57641719|ref|YP_184197.1| - 0.0005 19.1 0.0 0.00068 18.7 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase CMAS PF02353.15 gi|57641719|ref|YP_184197.1| - 0.0011 18.1 0.0 0.0022 17.1 0.0 1.4 2 0 0 2 2 2 1 Mycolic acid cyclopropane synthetase Methyltransf_16 PF10294.4 gi|57641719|ref|YP_184197.1| - 0.0013 18.1 0.0 0.0019 17.6 0.0 1.2 1 0 0 1 1 1 1 Putative methyltransferase Methyltransf_12 PF08242.7 gi|57641719|ref|YP_184197.1| - 0.0032 17.9 0.0 0.01 16.3 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|57641719|ref|YP_184197.1| - 0.0048 16.3 0.0 0.0076 15.6 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_4 PF02390.12 gi|57641719|ref|YP_184197.1| - 0.019 13.9 0.0 0.17 10.9 0.0 1.9 2 0 0 2 2 2 0 Putative methyltransferase PepSY_2 PF13670.1 gi|57641719|ref|YP_184197.1| - 0.022 14.6 0.0 6.4 6.7 0.0 2.3 2 0 0 2 2 2 0 Peptidase propeptide and YPEB domain Methyltransf_3 PF01596.12 gi|57641719|ref|YP_184197.1| - 0.096 11.7 0.0 0.14 11.1 0.0 1.2 1 0 0 1 1 1 0 O-methyltransferase UPF0020 PF01170.13 gi|57641719|ref|YP_184197.1| - 0.14 11.6 0.0 0.23 11.0 0.0 1.3 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 Methyltrans_SAM PF10672.4 gi|57641720|ref|YP_184198.1| - 2.1e-20 72.7 0.0 2.9e-20 72.3 0.0 1.3 1 0 0 1 1 1 1 S-adenosylmethionine-dependent methyltransferase Met_10 PF02475.11 gi|57641720|ref|YP_184198.1| - 1.5e-19 70.3 0.4 2.3e-19 69.7 0.2 1.3 1 0 0 1 1 1 1 Met-10+ like-protein PUA PF01472.15 gi|57641720|ref|YP_184198.1| - 2.1e-14 52.9 0.7 5.2e-14 51.7 0.5 1.7 1 0 0 1 1 1 1 PUA domain Cons_hypoth95 PF03602.10 gi|57641720|ref|YP_184198.1| - 8.4e-14 51.3 0.0 1.6e-13 50.5 0.0 1.4 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_31 PF13847.1 gi|57641720|ref|YP_184198.1| - 1.6e-12 47.2 0.0 2.8e-12 46.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|57641720|ref|YP_184198.1| - 3.3e-12 46.4 0.0 5.6e-12 45.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|57641720|ref|YP_184198.1| - 1.6e-11 43.9 0.0 2.7e-11 43.1 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_18 PF12847.2 gi|57641720|ref|YP_184198.1| - 1.3e-09 38.5 0.0 2.4e-09 37.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.5 gi|57641720|ref|YP_184198.1| - 2.2e-09 37.0 0.0 3.9e-09 36.2 0.0 1.4 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_3 PF01596.12 gi|57641720|ref|YP_184198.1| - 4.4e-08 32.4 0.2 1.1e-07 31.0 0.1 1.6 1 1 0 1 1 1 1 O-methyltransferase TRM PF02005.11 gi|57641720|ref|YP_184198.1| - 5.7e-07 28.7 0.0 7.7e-07 28.3 0.0 1.2 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase MTS PF05175.9 gi|57641720|ref|YP_184198.1| - 1.4e-06 27.8 0.0 2.1e-06 27.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain UPF0020 PF01170.13 gi|57641720|ref|YP_184198.1| - 3.4e-06 26.7 0.0 8.2e-06 25.5 0.0 1.5 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_25 PF13649.1 gi|57641720|ref|YP_184198.1| - 0.0011 19.2 0.0 0.0027 18.0 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|57641720|ref|YP_184198.1| - 0.0022 17.7 0.0 0.0044 16.7 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain DNA_methylase PF00145.12 gi|57641720|ref|YP_184198.1| - 0.057 12.5 0.1 0.11 11.5 0.0 1.5 2 0 0 2 2 2 0 C-5 cytosine-specific DNA methylase Methyltransf_11 PF08241.7 gi|57641720|ref|YP_184198.1| - 0.11 13.0 0.0 0.28 11.6 0.0 1.9 1 0 0 1 1 1 0 Methyltransferase domain UPF0223 PF05256.7 gi|57641721|ref|YP_184199.1| - 0.11 12.6 1.3 0.19 11.8 0.9 1.4 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0223) TctA PF01970.11 gi|57641722|ref|YP_184200.1| - 5.3e-51 173.3 46.0 6.4e-51 173.0 31.9 1.1 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter TctA family tRNA_anti-codon PF01336.20 gi|57641723|ref|YP_184201.1| - 0.00082 19.1 0.5 0.86 9.5 0.0 4.3 5 1 0 5 5 5 1 OB-fold nucleic acid binding domain KaiC PF06745.8 gi|57641724|ref|YP_184202.1| - 1.2e-75 253.5 0.2 1.4e-75 253.3 0.1 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|57641724|ref|YP_184202.1| - 1e-11 44.6 0.0 1.4e-11 44.1 0.0 1.2 1 0 0 1 1 1 1 AAA domain GvpD PF07088.6 gi|57641724|ref|YP_184202.1| - 7.3e-10 37.7 0.2 1.1e-09 37.2 0.1 1.1 1 0 0 1 1 1 1 GvpD gas vesicle protein AAA_17 PF13207.1 gi|57641724|ref|YP_184202.1| - 9e-07 29.7 0.6 1.4e-06 29.1 0.4 1.5 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|57641724|ref|YP_184202.1| - 1.8e-05 24.8 0.0 4.1e-05 23.7 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|57641724|ref|YP_184202.1| - 5.4e-05 23.4 1.5 0.0011 19.2 0.2 2.6 1 1 1 2 2 2 1 AAA domain T2SE PF00437.15 gi|57641724|ref|YP_184202.1| - 0.00015 20.7 0.0 0.0003 19.7 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_19 PF13245.1 gi|57641724|ref|YP_184202.1| - 0.00019 21.0 0.0 0.00046 19.8 0.0 1.7 1 0 0 1 1 1 1 Part of AAA domain AAA_14 PF13173.1 gi|57641724|ref|YP_184202.1| - 0.00025 20.9 0.0 0.00052 19.9 0.0 1.5 1 1 0 1 1 1 1 AAA domain RecA PF00154.16 gi|57641724|ref|YP_184202.1| - 0.00049 19.2 0.0 0.00084 18.5 0.0 1.4 1 0 0 1 1 1 1 recA bacterial DNA recombination protein AAA_29 PF13555.1 gi|57641724|ref|YP_184202.1| - 0.00067 19.1 0.1 0.0032 16.9 0.1 1.9 2 0 0 2 2 2 1 P-loop containing region of AAA domain Arch_ATPase PF01637.13 gi|57641724|ref|YP_184202.1| - 0.002 17.9 0.1 0.0039 16.9 0.1 1.4 1 0 0 1 1 1 1 Archaeal ATPase NACHT PF05729.7 gi|57641724|ref|YP_184202.1| - 0.0053 16.4 0.4 0.014 15.0 0.3 2.0 1 1 0 1 1 1 1 NACHT domain IstB_IS21 PF01695.12 gi|57641724|ref|YP_184202.1| - 0.0061 15.9 0.0 0.01 15.2 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein DEAD PF00270.24 gi|57641724|ref|YP_184202.1| - 0.0067 15.9 0.0 0.0077 15.7 0.0 1.4 1 1 0 1 1 1 1 DEAD/DEAH box helicase AAA_33 PF13671.1 gi|57641724|ref|YP_184202.1| - 0.0082 16.0 0.0 0.011 15.5 0.0 1.5 1 1 0 1 1 1 1 AAA domain ABC_tran PF00005.22 gi|57641724|ref|YP_184202.1| - 0.016 15.5 0.4 0.045 14.0 0.3 1.5 1 1 0 1 1 1 0 ABC transporter LAGLIDADG_WhiA PF14527.1 gi|57641724|ref|YP_184202.1| - 0.018 14.9 0.1 0.05 13.4 0.1 1.7 1 0 0 1 1 1 0 WhiA LAGLIDADG-like domain NTPase_1 PF03266.10 gi|57641724|ref|YP_184202.1| - 0.018 14.7 0.7 0.034 13.8 0.5 1.5 1 1 0 1 1 1 0 NTPase DnaB_C PF03796.10 gi|57641724|ref|YP_184202.1| - 0.023 13.6 0.0 0.054 12.3 0.0 1.7 1 1 0 1 1 1 0 DnaB-like helicase C terminal domain MobB PF03205.9 gi|57641724|ref|YP_184202.1| - 0.024 14.3 0.2 0.037 13.7 0.1 1.5 1 1 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_28 PF13521.1 gi|57641724|ref|YP_184202.1| - 0.028 14.3 0.0 0.044 13.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain Zot PF05707.7 gi|57641724|ref|YP_184202.1| - 0.029 13.8 0.0 0.061 12.7 0.0 1.6 1 0 0 1 1 1 0 Zonular occludens toxin (Zot) Sigma54_activat PF00158.21 gi|57641724|ref|YP_184202.1| - 0.032 13.7 0.0 0.073 12.5 0.0 1.6 2 0 0 2 2 1 0 Sigma-54 interaction domain PhoH PF02562.11 gi|57641724|ref|YP_184202.1| - 0.043 13.0 0.0 0.066 12.4 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein FtsK_SpoIIIE PF01580.13 gi|57641724|ref|YP_184202.1| - 0.051 13.0 0.0 0.092 12.2 0.0 1.5 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_10 PF12846.2 gi|57641724|ref|YP_184202.1| - 0.063 12.6 0.1 0.12 11.7 0.0 1.4 1 1 0 1 1 1 0 AAA-like domain AAA_16 PF13191.1 gi|57641724|ref|YP_184202.1| - 0.068 13.1 0.1 0.13 12.2 0.1 1.4 1 0 0 1 1 1 0 AAA ATPase domain AAA_23 PF13476.1 gi|57641724|ref|YP_184202.1| - 0.07 13.4 0.8 0.07 13.4 0.5 1.9 2 1 0 2 2 2 0 AAA domain MEDS PF14417.1 gi|57641724|ref|YP_184202.1| - 0.092 11.8 0.0 0.14 11.1 0.0 1.3 1 0 0 1 1 1 0 MEDS: MEthanogen/methylotroph, DcmR Sensory domain APS_kinase PF01583.15 gi|57641724|ref|YP_184202.1| - 0.092 12.3 0.2 0.26 10.9 0.0 1.8 2 0 0 2 2 2 0 Adenylylsulphate kinase UPF0079 PF02367.12 gi|57641724|ref|YP_184202.1| - 0.12 11.9 0.2 0.32 10.6 0.1 1.7 2 0 0 2 2 1 0 Uncharacterised P-loop hydrolase UPF0079 PAXNEB PF05625.6 gi|57641724|ref|YP_184202.1| - 0.14 10.9 0.1 0.26 10.0 0.0 1.3 1 0 0 1 1 1 0 PAXNEB protein AAA PF00004.24 gi|57641724|ref|YP_184202.1| - 0.15 12.3 0.4 0.32 11.1 0.3 1.7 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) ResIII PF04851.10 gi|57641724|ref|YP_184202.1| - 0.15 11.8 0.0 0.23 11.2 0.0 1.3 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit AAA_24 PF13479.1 gi|57641724|ref|YP_184202.1| - 0.17 11.4 1.4 0.23 11.0 1.0 1.4 1 1 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|57641724|ref|YP_184202.1| - 0.19 11.4 0.5 2.9 7.6 0.4 2.3 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) DNA_primase_lrg PF04104.9 gi|57641725|ref|YP_184203.1| - 6.6e-37 127.1 0.0 1.5e-36 126.0 0.0 1.5 1 1 0 1 1 1 1 Eukaryotic and archaeal DNA primase, large subunit DNA_primase_S PF01896.14 gi|57641726|ref|YP_184204.1| - 3.4e-13 49.6 0.0 5.9e-13 48.8 0.0 1.4 1 0 0 1 1 1 1 Eukaryotic and archaeal DNA primase small subunit DUF1186 PF06685.6 gi|57641726|ref|YP_184204.1| - 0.074 12.1 0.0 0.13 11.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1186) Acyltransferase PF01553.16 gi|57641726|ref|YP_184204.1| - 0.079 12.4 0.0 0.13 11.7 0.0 1.3 1 0 0 1 1 1 0 Acyltransferase EamA PF00892.15 gi|57641727|ref|YP_184205.1| - 5.2e-28 97.6 35.0 8.2e-15 54.9 4.8 2.9 2 1 1 3 3 3 2 EamA-like transporter family EmrE PF13536.1 gi|57641727|ref|YP_184205.1| - 1.2e-07 31.9 11.9 1.2e-07 31.9 8.3 3.3 2 2 1 3 3 3 1 Multidrug resistance efflux transporter DUF3154 PF11351.3 gi|57641727|ref|YP_184205.1| - 0.61 9.8 9.3 0.036 13.8 1.6 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3154) BatD PF13584.1 gi|57641728|ref|YP_184206.1| - 0.0024 16.5 0.0 0.0038 15.8 0.0 1.2 1 0 0 1 1 1 1 Oxygen tolerance Herpes_gE PF02480.11 gi|57641728|ref|YP_184206.1| - 0.015 13.5 0.1 0.025 12.8 0.0 1.3 1 0 0 1 1 1 0 Alphaherpesvirus glycoprotein E CARDB PF07705.6 gi|57641728|ref|YP_184206.1| - 0.091 12.8 4.3 3.3 7.8 0.1 3.5 3 0 0 3 3 3 0 CARDB Acetyltransf_6 PF13480.1 gi|57641729|ref|YP_184207.1| - 0.037 13.9 0.1 0.044 13.7 0.1 1.1 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain RseC_MucC PF04246.7 gi|57641729|ref|YP_184207.1| - 0.11 12.1 6.3 0.031 13.8 2.0 1.7 1 1 1 2 2 2 0 Positive regulator of sigma(E), RseC/MucC DUF4203 PF13886.1 gi|57641729|ref|YP_184207.1| - 0.2 11.0 7.8 0.24 10.8 5.4 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4203) DUF1469 PF07332.6 gi|57641729|ref|YP_184207.1| - 2.5 7.8 8.9 0.18 11.5 2.1 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF1469) DUF308 PF03729.8 gi|57641729|ref|YP_184207.1| - 3.6 7.6 10.4 23 5.0 7.2 2.0 1 1 0 1 1 1 0 Short repeat of unknown function (DUF308) DUF61 PF01886.11 gi|57641730|ref|YP_184208.1| - 6.2e-46 155.5 0.6 6.9e-46 155.3 0.4 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF61 Gln-synt_C PF00120.19 gi|57641731|ref|YP_184209.1| - 1.1e-99 332.7 0.0 1.4e-99 332.4 0.0 1.1 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.14 gi|57641731|ref|YP_184209.1| - 3.8e-19 68.0 0.0 6.6e-19 67.2 0.0 1.3 1 0 0 1 1 1 1 Glutamine synthetase, beta-Grasp domain EamA PF00892.15 gi|57641732|ref|YP_184210.1| - 1.4e-47 160.8 35.5 4.9e-27 94.4 6.8 2.1 2 0 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|57641732|ref|YP_184210.1| - 1.6e-13 50.8 29.5 9.6e-08 32.2 7.8 3.4 1 1 1 3 3 3 2 Multidrug resistance efflux transporter UAA PF08449.6 gi|57641732|ref|YP_184210.1| - 4.8e-05 22.4 22.4 0.0054 15.6 10.5 3.3 1 1 1 2 2 2 2 UAA transporter family TPT PF03151.11 gi|57641732|ref|YP_184210.1| - 0.0014 18.2 22.1 0.053 13.1 4.1 3.2 2 1 0 2 2 2 2 Triose-phosphate Transporter family DUF914 PF06027.7 gi|57641732|ref|YP_184210.1| - 0.028 13.2 19.0 0.13 11.0 7.4 3.0 1 1 0 2 2 2 0 Eukaryotic protein of unknown function (DUF914) UPF0546 PF10639.4 gi|57641732|ref|YP_184210.1| - 0.042 13.6 11.3 0.053 13.3 0.6 2.4 2 0 0 2 2 2 0 Uncharacterised protein family UPF0546 DUF4605 PF15378.1 gi|57641732|ref|YP_184210.1| - 0.16 11.7 2.8 1.5 8.6 0.1 3.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4605) NAD_synthase PF02540.12 gi|57641733|ref|YP_184211.1| - 2.2e-93 311.6 0.0 2.4e-93 311.4 0.0 1.0 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.11 gi|57641733|ref|YP_184211.1| - 4.6e-07 28.7 0.1 3.5e-06 25.8 0.0 2.3 3 0 0 3 3 3 1 tRNA methyl transferase QueC PF06508.8 gi|57641733|ref|YP_184211.1| - 2.4e-06 26.9 0.0 0.0011 18.2 0.0 2.2 2 0 0 2 2 2 2 Queuosine biosynthesis protein QueC Asn_synthase PF00733.16 gi|57641733|ref|YP_184211.1| - 0.0026 17.2 0.0 0.004 16.6 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase ThiI PF02568.9 gi|57641733|ref|YP_184211.1| - 0.012 15.1 0.1 0.29 10.5 0.0 2.2 2 0 0 2 2 2 0 Thiamine biosynthesis protein (ThiI) ATP_bind_4 PF01902.12 gi|57641733|ref|YP_184211.1| - 0.091 12.1 0.3 0.22 10.8 0.0 1.7 2 0 0 2 2 2 0 ATP-binding region DUF3955 PF13127.1 gi|57641734|ref|YP_184212.1| - 0.58 9.7 6.3 0.44 10.1 0.9 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3955) ABC_tran PF00005.22 gi|57641735|ref|YP_184213.1| - 8e-32 110.4 0.0 1e-31 110.0 0.0 1.1 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|57641735|ref|YP_184213.1| - 5.9e-21 74.5 0.2 1e-20 73.8 0.2 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|57641735|ref|YP_184213.1| - 6.6e-10 39.4 0.0 5.6e-07 29.8 0.0 2.2 1 1 1 2 2 2 2 AAA domain AAA_10 PF12846.2 gi|57641735|ref|YP_184213.1| - 0.00032 20.2 0.0 0.0006 19.3 0.0 1.3 1 1 0 1 1 1 1 AAA-like domain SMC_N PF02463.14 gi|57641735|ref|YP_184213.1| - 0.002 17.4 0.0 0.0077 15.4 0.0 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|57641735|ref|YP_184213.1| - 0.0033 16.8 0.0 0.0058 16.1 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_18 PF13238.1 gi|57641735|ref|YP_184213.1| - 0.0051 17.1 0.0 0.01 16.1 0.0 1.5 2 0 0 2 2 1 1 AAA domain AAA_22 PF13401.1 gi|57641735|ref|YP_184213.1| - 0.0053 16.8 0.0 0.05 13.7 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|57641735|ref|YP_184213.1| - 0.023 15.5 0.0 0.15 12.8 0.0 2.1 2 0 0 2 2 2 0 AAA domain PRK PF00485.13 gi|57641735|ref|YP_184213.1| - 0.045 13.3 0.0 0.072 12.6 0.0 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA_25 PF13481.1 gi|57641735|ref|YP_184213.1| - 0.047 13.0 0.0 0.64 9.3 0.0 2.5 2 1 1 3 3 3 0 AAA domain DUF258 PF03193.11 gi|57641735|ref|YP_184213.1| - 0.05 12.7 0.0 0.094 11.9 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 Rad17 PF03215.10 gi|57641735|ref|YP_184213.1| - 0.052 12.2 0.0 0.066 11.8 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA PF00004.24 gi|57641735|ref|YP_184213.1| - 0.065 13.4 0.0 0.16 12.1 0.0 1.7 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|57641735|ref|YP_184213.1| - 0.072 13.0 0.0 0.12 12.3 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain AAA_13 PF13166.1 gi|57641735|ref|YP_184213.1| - 0.12 10.8 0.0 0.42 9.0 0.0 1.7 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.17 gi|57641735|ref|YP_184213.1| - 0.13 12.4 0.0 0.25 11.5 0.0 1.5 1 0 0 1 1 1 0 RNA helicase Mg_chelatase PF01078.16 gi|57641735|ref|YP_184213.1| - 0.14 11.2 0.0 0.28 10.3 0.0 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_15 PF13175.1 gi|57641735|ref|YP_184213.1| - 0.14 11.1 0.0 5 6.0 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain RHH_3 PF12651.2 gi|57641735|ref|YP_184213.1| - 0.28 10.9 1.6 0.32 10.7 0.1 1.8 2 0 0 2 2 2 0 Ribbon-helix-helix domain ABC_tran PF00005.22 gi|57641736|ref|YP_184214.1| - 3.7e-28 98.5 0.0 5.1e-28 98.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|57641736|ref|YP_184214.1| - 5.7e-22 77.8 0.4 9.2e-22 77.1 0.3 1.3 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|57641736|ref|YP_184214.1| - 6.6e-11 42.7 0.8 2.5e-10 40.7 0.0 2.0 1 1 1 2 2 2 1 AAA domain DUF258 PF03193.11 gi|57641736|ref|YP_184214.1| - 0.007 15.5 0.0 0.012 14.7 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_25 PF13481.1 gi|57641736|ref|YP_184214.1| - 0.089 12.1 0.1 0.51 9.7 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.1 gi|57641736|ref|YP_184214.1| - 0.18 11.3 0.1 0.34 10.4 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain BPD_transp_1 PF00528.17 gi|57641737|ref|YP_184215.1| - 1.7e-28 99.4 13.1 1.7e-28 99.4 9.1 1.9 2 1 1 3 3 3 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|57641737|ref|YP_184215.1| - 2.5e-07 29.9 0.1 2.5e-07 29.9 0.1 2.5 3 0 0 3 3 3 1 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.17 gi|57641738|ref|YP_184216.1| - 1.5e-37 128.9 19.1 1.5e-37 128.9 13.2 1.6 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component CHD5 PF04420.9 gi|57641738|ref|YP_184216.1| - 0.75 9.4 6.0 0.63 9.6 2.2 2.1 2 0 0 2 2 2 0 CHD5-like protein SBP_bac_5 PF00496.17 gi|57641739|ref|YP_184217.1| - 3.5e-25 88.6 18.5 1.1e-24 86.9 12.8 1.7 1 1 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle Leucyl-specific PF14795.1 gi|57641739|ref|YP_184217.1| - 0.05 13.4 0.1 0.13 12.0 0.1 1.7 1 0 0 1 1 1 0 Leucine-tRNA synthetase-specific domain Amidohydro_1 PF01979.15 gi|57641740|ref|YP_184218.1| - 4e-15 56.3 0.0 9.2e-15 55.1 0.0 1.6 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_4 PF13147.1 gi|57641740|ref|YP_184218.1| - 1.1e-14 55.1 0.0 1.6e-13 51.3 0.0 2.5 1 1 0 1 1 1 1 Amidohydrolase Amidohydro_5 PF13594.1 gi|57641740|ref|YP_184218.1| - 9.1e-12 44.6 0.9 2.8e-11 43.0 0.5 2.0 2 0 0 2 2 2 1 Amidohydrolase TatD_DNase PF01026.16 gi|57641740|ref|YP_184218.1| - 0.001 18.3 0.1 0.73 8.9 0.0 2.3 2 1 0 2 2 2 2 TatD related DNase NAD_binding_1 PF00175.16 gi|57641741|ref|YP_184219.1| - 1.4e-16 61.0 0.0 2.6e-16 60.1 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase NAD-binding domain DHODB_Fe-S_bind PF10418.4 gi|57641741|ref|YP_184219.1| - 1.4e-13 50.1 3.4 2.4e-13 49.2 2.3 1.4 1 0 0 1 1 1 1 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B FAD_binding_6 PF00970.19 gi|57641741|ref|YP_184219.1| - 1.6e-09 37.7 0.0 3.5e-09 36.6 0.0 1.6 1 0 0 1 1 1 1 Oxidoreductase FAD-binding domain NAD_binding_6 PF08030.7 gi|57641741|ref|YP_184219.1| - 0.0003 20.7 0.2 0.0058 16.5 0.0 2.4 2 1 1 3 3 3 1 Ferric reductase NAD binding domain WASH-7_N PF14745.1 gi|57641741|ref|YP_184219.1| - 0.096 10.8 0.0 0.13 10.4 0.0 1.1 1 0 0 1 1 1 0 WASH complex subunit 7, N-terminal Radical_SAM PF04055.16 gi|57641742|ref|YP_184220.1| - 1.9e-16 60.6 3.8 1e-14 55.0 1.7 2.7 2 1 0 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|57641742|ref|YP_184220.1| - 0.019 15.0 3.6 0.15 12.0 0.3 3.0 3 1 0 3 3 3 0 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|57641742|ref|YP_184220.1| - 2.3 8.3 4.4 9 6.4 0.7 2.7 2 1 0 2 2 2 0 4Fe-4S single cluster domain DUF1926 PF09095.6 gi|57641744|ref|YP_184222.1| - 1.1e-96 323.3 0.0 1.5e-96 322.8 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1926) Glyco_hydro_57 PF03065.10 gi|57641744|ref|YP_184222.1| - 6.8e-66 222.6 0.4 1.5e-65 221.4 0.3 1.6 1 1 0 1 1 1 1 Glycosyl hydrolase family 57 DUF1925 PF09094.6 gi|57641744|ref|YP_184222.1| - 2.1e-36 123.7 0.7 4.3e-36 122.7 0.5 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1925) Glyco_hydro_38 PF01074.17 gi|57641744|ref|YP_184222.1| - 3.1e-07 29.9 0.1 4.2e-06 26.2 0.0 2.1 2 0 0 2 2 2 1 Glycosyl hydrolases family 38 N-terminal domain CoA_binding_2 PF13380.1 gi|57641744|ref|YP_184222.1| - 0.044 13.9 0.0 0.11 12.6 0.0 1.6 1 0 0 1 1 1 0 CoA binding domain CTP_transf_1 PF01148.15 gi|57641745|ref|YP_184223.1| - 3.7e-16 59.5 14.8 4e-14 52.8 10.2 2.5 1 1 0 1 1 1 1 Cytidylyltransferase family DUF4181 PF13789.1 gi|57641745|ref|YP_184223.1| - 0.062 13.2 2.1 0.12 12.2 0.0 2.3 3 0 0 3 3 3 0 Domain of unknown function (DUF4181) ExoD PF06055.7 gi|57641745|ref|YP_184223.1| - 0.068 12.2 2.6 1.9 7.5 0.1 2.4 2 0 0 2 2 2 0 Exopolysaccharide synthesis, ExoD HAD_2 PF13419.1 gi|57641746|ref|YP_184224.1| - 6.4e-22 78.6 0.1 8.8e-22 78.1 0.0 1.2 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|57641746|ref|YP_184224.1| - 1.8e-13 49.9 0.0 1.3e-12 47.2 0.0 2.0 2 0 0 2 2 2 1 HAD-hyrolase-like Hydrolase PF00702.21 gi|57641746|ref|YP_184224.1| - 5.8e-07 30.1 0.0 1.6e-06 28.6 0.0 1.7 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|57641746|ref|YP_184224.1| - 0.00016 21.8 0.1 0.00019 21.6 0.1 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.1 gi|57641746|ref|YP_184224.1| - 0.0037 17.1 0.0 0.0078 16.0 0.0 1.5 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase NIF PF03031.13 gi|57641746|ref|YP_184224.1| - 0.012 15.2 0.1 0.27 10.8 0.0 2.2 2 0 0 2 2 2 0 NLI interacting factor-like phosphatase NT5C PF06941.7 gi|57641746|ref|YP_184224.1| - 0.018 14.5 0.1 0.066 12.7 0.0 1.9 2 0 0 2 2 2 0 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) PGP_phosphatase PF09419.5 gi|57641746|ref|YP_184224.1| - 0.024 13.9 1.5 0.026 13.8 0.0 1.8 2 1 0 2 2 2 0 Mitochondrial PGP phosphatase DUF131 PF01998.12 gi|57641747|ref|YP_184225.1| - 4.7e-17 61.0 9.3 4.7e-17 61.0 6.4 1.8 1 1 1 2 2 2 1 Protein of unknown function DUF131 DUF4064 PF13273.1 gi|57641747|ref|YP_184225.1| - 0.0023 18.0 6.0 0.0029 17.6 4.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF4064) Fig1 PF12351.3 gi|57641747|ref|YP_184225.1| - 0.034 14.0 3.8 0.045 13.6 2.6 1.1 1 0 0 1 1 1 0 Ca2+ regulator and membrane fusion protein Fig1 Claudin_3 PF06653.6 gi|57641747|ref|YP_184225.1| - 0.074 12.7 1.4 0.082 12.6 0.9 1.0 1 0 0 1 1 1 0 Tight junction protein, Claudin-like DUF3098 PF11297.3 gi|57641747|ref|YP_184225.1| - 0.96 9.2 6.6 1.3 8.8 4.3 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3098) FixQ PF05545.6 gi|57641747|ref|YP_184225.1| - 7.3 6.3 7.3 4.2 7.0 0.2 2.3 2 0 0 2 2 2 0 Cbb3-type cytochrome oxidase component FixQ DUF4282 PF14110.1 gi|57641747|ref|YP_184225.1| - 9.8 6.4 13.7 7.8 6.7 2.9 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4282) Na_H_Exchanger PF00999.16 gi|57641748|ref|YP_184226.1| - 3.9e-71 239.5 44.4 4.7e-71 239.3 30.8 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family Ldr_toxin PF13940.1 gi|57641748|ref|YP_184226.1| - 3 7.6 6.0 18 5.2 0.3 3.8 3 0 0 3 3 3 0 Toxin Ldr, type I toxin-antitoxin system Pyridoxal_deC PF00282.14 gi|57641749|ref|YP_184227.1| - 1.1e-36 126.0 0.0 1.7e-36 125.4 0.0 1.2 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain Aminotran_5 PF00266.14 gi|57641749|ref|YP_184227.1| - 2.5e-14 52.7 0.0 6.8e-10 38.2 0.0 2.1 2 0 0 2 2 2 2 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.12 gi|57641749|ref|YP_184227.1| - 1.3e-11 44.1 0.1 3.9e-11 42.6 0.1 1.6 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.16 gi|57641749|ref|YP_184227.1| - 1.9e-07 30.5 0.0 3.7e-07 29.5 0.0 1.4 1 1 0 1 1 1 1 Beta-eliminating lyase Aminotran_1_2 PF00155.16 gi|57641749|ref|YP_184227.1| - 3.3e-06 26.3 0.0 6.6e-05 22.0 0.0 2.0 2 0 0 2 2 2 1 Aminotransferase class I and II SLA_LP_auto_ag PF05889.8 gi|57641749|ref|YP_184227.1| - 0.00041 18.9 0.0 0.004 15.6 0.0 2.1 2 0 0 2 2 2 1 Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) RHH_1 PF01402.16 gi|57641750|ref|YP_184228.1| - 2.2e-09 36.8 0.1 4.1e-09 35.9 0.1 1.5 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_2 PF03693.9 gi|57641750|ref|YP_184228.1| - 0.0018 18.3 0.1 0.0037 17.3 0.1 1.5 1 1 0 1 1 1 1 Uncharacterised protein family (UPF0156) RHH_3 PF12651.2 gi|57641750|ref|YP_184228.1| - 0.013 15.2 1.2 9.6 6.0 0.0 3.1 3 0 0 3 3 3 0 Ribbon-helix-helix domain PemK PF02452.12 gi|57641751|ref|YP_184229.1| - 1e-07 32.1 0.0 1.2e-07 31.9 0.0 1.0 1 0 0 1 1 1 1 PemK-like protein Cation_efflux PF01545.16 gi|57641752|ref|YP_184230.1| - 5.7e-68 229.0 2.8 6.8e-68 228.7 2.0 1.0 1 0 0 1 1 1 1 Cation efflux family Asp23 PF03780.8 gi|57641752|ref|YP_184230.1| - 0.0043 17.3 0.1 0.009 16.2 0.1 1.6 1 0 0 1 1 1 1 Asp23 family AsnC_trans_reg PF01037.16 gi|57641752|ref|YP_184230.1| - 0.069 12.8 0.2 0.45 10.2 0.1 2.1 2 0 0 2 2 2 0 AsnC family Peptidase_M73 PF12389.3 gi|57641753|ref|YP_184231.1| - 0.0044 16.5 0.1 0.0062 16.0 0.1 1.2 1 0 0 1 1 1 1 Camelysin metallo-endopeptidase Polysacc_synt PF01943.12 gi|57641754|ref|YP_184232.1| - 1.5e-32 112.9 16.4 1.5e-32 112.9 11.4 2.1 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_3 PF13440.1 gi|57641754|ref|YP_184232.1| - 3.1e-20 72.7 15.7 3.1e-20 72.7 10.9 2.6 1 1 1 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.1 gi|57641754|ref|YP_184232.1| - 4e-19 68.8 46.6 2.1e-16 60.0 15.6 4.0 3 1 0 3 3 3 3 Polysaccharide biosynthesis C-terminal domain MVIN PF03023.9 gi|57641754|ref|YP_184232.1| - 1.1e-06 27.3 25.3 1.1e-06 27.3 17.6 2.0 1 1 1 2 2 2 1 MviN-like protein RHH_1 PF01402.16 gi|57641754|ref|YP_184232.1| - 0.0074 16.1 0.7 0.017 15.0 0.5 1.6 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family Peptidase_M50 PF02163.17 gi|57641755|ref|YP_184233.1| - 4.9e-23 81.0 0.8 4.9e-23 81.0 0.5 1.8 2 0 0 2 2 2 1 Peptidase family M50 PDZ_2 PF13180.1 gi|57641755|ref|YP_184233.1| - 3.1e-16 59.0 0.0 5.5e-16 58.2 0.0 1.4 1 0 0 1 1 1 1 PDZ domain PDZ PF00595.19 gi|57641755|ref|YP_184233.1| - 3.1e-09 36.8 0.1 8.7e-09 35.4 0.1 1.7 1 0 0 1 1 1 1 PDZ domain (Also known as DHR or GLGF) GRASP55_65 PF04495.9 gi|57641755|ref|YP_184233.1| - 0.0071 16.3 0.0 0.015 15.3 0.0 1.4 1 0 0 1 1 1 1 GRASP55/65 PDZ-like domain Tricorn_PDZ PF14685.1 gi|57641755|ref|YP_184233.1| - 0.043 13.6 0.1 0.097 12.4 0.0 1.6 1 0 0 1 1 1 0 Tricorn protease PDZ domain PDZ_1 PF12812.2 gi|57641755|ref|YP_184233.1| - 0.11 12.3 0.0 0.53 10.2 0.0 2.0 2 0 0 2 2 2 0 PDZ-like domain ATP_bind_3 PF01171.15 gi|57641756|ref|YP_184234.1| - 5.9e-15 55.2 0.0 1.7e-14 53.7 0.0 1.7 1 1 0 1 1 1 1 PP-loop family tRNA_Me_trans PF03054.11 gi|57641756|ref|YP_184234.1| - 8e-05 21.3 0.0 0.00013 20.6 0.0 1.3 1 0 0 1 1 1 1 tRNA methyl transferase PAPS_reduct PF01507.14 gi|57641756|ref|YP_184234.1| - 0.00053 19.8 0.0 0.0034 17.2 0.0 2.2 2 0 0 2 2 2 1 Phosphoadenosine phosphosulfate reductase family Asn_synthase PF00733.16 gi|57641756|ref|YP_184234.1| - 0.0028 17.2 0.0 0.0044 16.5 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase DUF2392 PF10288.4 gi|57641756|ref|YP_184234.1| - 0.021 15.1 0.0 0.11 12.8 0.0 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF2392) NAD_synthase PF02540.12 gi|57641756|ref|YP_184234.1| - 0.049 12.5 0.0 0.084 11.7 0.0 1.3 1 0 0 1 1 1 0 NAD synthase RecR PF02132.10 gi|57641756|ref|YP_184234.1| - 0.77 9.2 11.9 0.11 11.9 1.7 3.0 3 0 0 3 3 3 0 RecR protein AAA_14 PF13173.1 gi|57641757|ref|YP_184235.1| - 1.7e-35 121.7 0.0 3.6e-35 120.6 0.0 1.6 1 0 0 1 1 1 1 AAA domain DUF4143 PF13635.1 gi|57641757|ref|YP_184235.1| - 7.3e-09 35.6 0.1 1.6e-08 34.6 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4143) Arch_ATPase PF01637.13 gi|57641757|ref|YP_184235.1| - 2.2e-05 24.2 0.3 9.9e-05 22.1 0.1 2.0 1 1 1 2 2 2 1 Archaeal ATPase AAA_25 PF13481.1 gi|57641757|ref|YP_184235.1| - 0.0013 18.2 0.0 0.0023 17.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain HTH_WhiA PF02650.9 gi|57641757|ref|YP_184235.1| - 0.017 15.5 0.2 0.055 13.8 0.1 1.8 1 0 0 1 1 1 0 WhiA C-terminal HTH domain DUF3970 PF13113.1 gi|57641758|ref|YP_184236.1| - 0.044 13.4 0.3 0.083 12.5 0.2 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3970) KaiC PF06745.8 gi|57641759|ref|YP_184237.1| - 0.0007 18.7 0.0 0.0011 18.1 0.0 1.3 1 0 0 1 1 1 1 KaiC PAXNEB PF05625.6 gi|57641759|ref|YP_184237.1| - 0.077 11.8 0.8 1 8.1 0.4 2.0 2 0 0 2 2 2 0 PAXNEB protein AAA_21 PF13304.1 gi|57641759|ref|YP_184237.1| - 0.19 11.6 7.7 0.23 11.3 5.3 1.2 1 0 0 1 1 1 0 AAA domain HTH_34 PF13601.1 gi|57641761|ref|YP_184239.1| - 2.6e-20 72.2 0.0 3.1e-20 71.9 0.0 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_5 PF01022.15 gi|57641761|ref|YP_184239.1| - 5.5e-09 35.5 0.1 2.3e-08 33.5 0.0 1.9 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|57641761|ref|YP_184239.1| - 3.6e-08 33.0 0.2 1.1e-07 31.5 0.1 1.8 1 1 1 2 2 2 1 Helix-turn-helix domain PadR PF03551.9 gi|57641761|ref|YP_184239.1| - 0.0026 17.4 0.0 0.0046 16.7 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family MarR PF01047.17 gi|57641761|ref|YP_184239.1| - 0.0038 16.8 0.0 0.0058 16.3 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|57641761|ref|YP_184239.1| - 0.005 17.1 0.0 0.0079 16.4 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|57641761|ref|YP_184239.1| - 0.0081 15.8 0.0 0.012 15.3 0.0 1.3 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|57641761|ref|YP_184239.1| - 0.023 14.4 0.0 0.039 13.6 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|57641761|ref|YP_184239.1| - 0.028 13.7 0.1 0.099 12.0 0.0 2.0 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding LexA_DNA_bind PF01726.11 gi|57641761|ref|YP_184239.1| - 0.044 13.3 0.0 0.085 12.4 0.0 1.6 1 0 0 1 1 1 0 LexA DNA binding domain HxlR PF01638.12 gi|57641761|ref|YP_184239.1| - 0.084 12.5 0.1 0.13 11.8 0.0 1.4 1 1 0 1 1 1 0 HxlR-like helix-turn-helix HTH_IclR PF09339.5 gi|57641761|ref|YP_184239.1| - 0.088 12.4 0.2 0.17 11.5 0.1 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain Fe_dep_repress PF01325.14 gi|57641761|ref|YP_184239.1| - 0.13 12.2 0.1 0.51 10.3 0.0 1.9 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain GntR PF00392.16 gi|57641761|ref|YP_184239.1| - 0.14 11.5 0.4 3.6 7.0 0.1 2.5 2 1 0 2 2 2 0 Bacterial regulatory proteins, gntR family Glyco_hydro_1 PF00232.13 gi|57641762|ref|YP_184240.1| - 1.3e-90 303.7 4.6 1.4e-89 300.3 3.2 1.9 1 1 0 1 1 1 1 Glycosyl hydrolase family 1 Cellulase PF00150.13 gi|57641762|ref|YP_184240.1| - 1.7e-05 24.2 0.0 7.1e-05 22.1 0.0 1.8 2 0 0 2 2 2 1 Cellulase (glycosyl hydrolase family 5) GalP_UDP_transf PF01087.17 gi|57641763|ref|YP_184241.1| - 1.2e-32 113.4 0.0 7.3e-32 110.8 0.0 2.0 2 0 0 2 2 2 1 Galactose-1-phosphate uridyl transferase, N-terminal domain GalP_UDP_tr_C PF02744.12 gi|57641763|ref|YP_184241.1| - 1.2e-17 63.9 0.0 2e-17 63.2 0.0 1.2 1 0 0 1 1 1 1 Galactose-1-phosphate uridyl transferase, C-terminal domain HIT PF01230.18 gi|57641763|ref|YP_184241.1| - 2.1e-06 28.1 0.0 0.0022 18.4 0.0 2.3 2 0 0 2 2 2 2 HIT domain DcpS_C PF11969.3 gi|57641763|ref|YP_184241.1| - 0.0014 18.8 0.0 0.0058 16.8 0.0 1.8 2 0 0 2 2 2 1 Scavenger mRNA decapping enzyme C-term binding MFS_1 PF07690.11 gi|57641764|ref|YP_184242.1| - 5.8e-55 186.4 28.3 8.1e-48 162.9 16.9 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|57641764|ref|YP_184242.1| - 2.1e-14 52.9 23.0 8.9e-14 50.9 15.9 1.9 1 1 0 1 1 1 1 Sugar (and other) transporter ATG22 PF11700.3 gi|57641764|ref|YP_184242.1| - 6.9e-13 47.8 26.2 1.1e-07 30.7 4.1 2.6 2 1 1 3 3 3 2 Vacuole effluxer Atg22 like MFS_2 PF13347.1 gi|57641764|ref|YP_184242.1| - 3.6e-12 45.4 22.7 2.4e-06 26.2 6.0 2.1 2 0 0 2 2 2 2 MFS/sugar transport protein MFS_1_like PF12832.2 gi|57641764|ref|YP_184242.1| - 0.00023 20.9 2.3 0.0015 18.3 0.3 3.2 2 1 0 2 2 2 1 MFS_1 like family OATP PF03137.15 gi|57641764|ref|YP_184242.1| - 0.018 13.1 17.6 0.077 11.0 1.6 3.4 1 1 2 3 3 3 0 Organic Anion Transporter Polypeptide (OATP) family BIV_Env PF05858.7 gi|57641764|ref|YP_184242.1| - 0.07 11.0 0.9 0.11 10.4 0.6 1.2 1 0 0 1 1 1 0 Bovine immunodeficiency virus surface protein (SU) MFS_3 PF05977.8 gi|57641764|ref|YP_184242.1| - 0.12 10.4 12.4 0.16 10.0 1.8 2.3 2 1 0 2 2 2 0 Transmembrane secretion effector Glyco_hydro_57 PF03065.10 gi|57641765|ref|YP_184243.1| - 5.2e-50 170.3 0.0 2.3e-47 161.6 0.0 2.2 1 1 0 1 1 1 1 Glycosyl hydrolase family 57 Polysacc_deac_1 PF01522.16 gi|57641765|ref|YP_184243.1| - 0.0014 18.2 0.0 0.002 17.7 0.0 1.2 1 0 0 1 1 1 1 Polysaccharide deacetylase GalKase_gal_bdg PF10509.4 gi|57641766|ref|YP_184244.1| - 3.1e-17 61.5 0.3 1.2e-16 59.7 0.1 2.1 2 0 0 2 2 2 1 Galactokinase galactose-binding signature GHMP_kinases_C PF08544.8 gi|57641766|ref|YP_184244.1| - 5.4e-15 55.3 0.4 1e-14 54.4 0.3 1.5 1 0 0 1 1 1 1 GHMP kinases C terminal GHMP_kinases_N PF00288.21 gi|57641766|ref|YP_184244.1| - 1e-14 54.2 3.9 1.4e-14 53.8 0.2 2.4 2 0 0 2 2 2 1 GHMP kinases N terminal domain VanZ PF04892.7 gi|57641767|ref|YP_184245.1| - 3.1e-05 23.9 3.9 0.00011 22.1 0.3 2.2 1 1 0 2 2 2 1 VanZ like family Oxidored_q5_N PF01059.12 gi|57641767|ref|YP_184245.1| - 0.01 15.7 1.0 0.027 14.3 0.2 2.0 2 0 0 2 2 2 0 NADH-ubiquinone oxidoreductase chain 4, amino terminus DUF2238 PF09997.4 gi|57641767|ref|YP_184245.1| - 0.014 14.7 0.3 0.027 13.8 0.2 1.5 1 0 0 1 1 1 0 Predicted membrane protein (DUF2238) DUF460 PF04312.8 gi|57641768|ref|YP_184246.1| - 1.9e-52 176.4 0.5 5.4e-52 174.9 0.1 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF460) GFO_IDH_MocA PF01408.17 gi|57641768|ref|YP_184246.1| - 0.0021 18.5 0.0 0.006 17.0 0.0 1.8 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold NYD-SP28_assoc PF14775.1 gi|57641768|ref|YP_184246.1| - 0.021 14.5 2.2 0.092 12.4 1.5 2.1 1 0 0 1 1 1 0 Sperm tail C-terminal domain SlyX PF04102.7 gi|57641768|ref|YP_184246.1| - 0.029 14.7 10.8 0.11 12.9 3.0 3.4 1 1 1 2 2 2 0 SlyX Fib_alpha PF08702.5 gi|57641768|ref|YP_184246.1| - 0.029 14.4 10.2 0.14 12.3 1.8 2.6 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family Halogen_Hydrol PF10112.4 gi|57641768|ref|YP_184246.1| - 0.21 11.0 4.7 0.71 9.2 0.4 2.4 1 1 1 2 2 2 0 5-bromo-4-chloroindolyl phosphate hydrolysis protein DUF1664 PF07889.7 gi|57641768|ref|YP_184246.1| - 0.28 10.9 6.7 0.63 9.8 2.9 2.7 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) Peptidase_C15 PF01470.12 gi|57641770|ref|YP_184248.1| - 3.2e-78 262.2 0.1 3.6e-78 262.0 0.1 1.0 1 0 0 1 1 1 1 Pyroglutamyl peptidase FAD_binding_3 PF01494.14 gi|57641771|ref|YP_184249.1| - 2.5e-18 66.2 1.5 4.1e-15 55.6 1.0 3.0 1 1 0 1 1 1 1 FAD binding domain Lycopene_cycl PF05834.7 gi|57641771|ref|YP_184249.1| - 5.8e-07 28.7 0.0 0.00036 19.5 0.0 2.1 2 0 0 2 2 2 2 Lycopene cyclase protein Trp_halogenase PF04820.9 gi|57641771|ref|YP_184249.1| - 9.1e-07 27.8 0.9 0.09 11.3 0.0 3.1 2 1 1 3 3 3 3 Tryptophan halogenase NAD_binding_8 PF13450.1 gi|57641771|ref|YP_184249.1| - 1.1e-05 25.2 2.5 0.00017 21.5 0.1 2.7 3 0 0 3 3 2 1 NAD(P)-binding Rossmann-like domain DAO PF01266.19 gi|57641771|ref|YP_184249.1| - 3.2e-05 23.0 0.4 0.015 14.1 0.1 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase Thi4 PF01946.12 gi|57641771|ref|YP_184249.1| - 0.00015 20.9 0.1 0.0004 19.5 0.1 1.7 1 0 0 1 1 1 1 Thi4 family HI0933_like PF03486.9 gi|57641771|ref|YP_184249.1| - 0.0062 15.0 0.0 0.011 14.1 0.0 1.4 1 0 0 1 1 1 1 HI0933-like protein Pyr_redox_2 PF07992.9 gi|57641771|ref|YP_184249.1| - 0.0083 16.0 0.1 0.021 14.7 0.0 1.6 1 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.2 gi|57641771|ref|YP_184249.1| - 0.021 13.8 0.2 0.033 13.2 0.1 1.3 1 0 0 1 1 1 0 FAD dependent oxidoreductase DUF1471 PF07338.8 gi|57641771|ref|YP_184249.1| - 0.031 13.9 0.0 0.074 12.7 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1471) Pyr_redox PF00070.22 gi|57641771|ref|YP_184249.1| - 0.031 14.6 0.4 0.25 11.7 0.1 2.3 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Saccharop_dh PF03435.13 gi|57641771|ref|YP_184249.1| - 0.087 11.7 0.1 0.15 11.0 0.1 1.4 1 0 0 1 1 1 0 Saccharopine dehydrogenase TrkA_N PF02254.13 gi|57641771|ref|YP_184249.1| - 0.11 12.5 0.0 0.29 11.1 0.0 1.7 1 0 0 1 1 1 0 TrkA-N domain Pyr_redox_3 PF13738.1 gi|57641771|ref|YP_184249.1| - 0.12 12.3 0.0 0.25 11.3 0.0 1.7 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase ASCH PF04266.9 gi|57641772|ref|YP_184250.1| - 5.4e-18 65.3 1.9 6.6e-18 65.0 1.3 1.0 1 0 0 1 1 1 1 ASCH domain S4_2 PF13275.1 gi|57641772|ref|YP_184250.1| - 0.0021 17.6 0.2 0.0035 16.9 0.2 1.3 1 0 0 1 1 1 1 S4 domain DUF3850 PF12961.2 gi|57641772|ref|YP_184250.1| - 0.076 12.9 0.3 0.18 11.7 0.1 1.8 2 0 0 2 2 2 0 Domain of Unknown Function with PDB structure (DUF3850) Prenyltrans_2 PF13249.1 gi|57641773|ref|YP_184251.1| - 4.4e-16 59.2 0.6 2e-11 44.2 0.1 2.6 2 0 0 2 2 2 2 Prenyltransferase-like Prenyltrans_1 PF13243.1 gi|57641773|ref|YP_184251.1| - 3.4e-08 33.4 1.7 6.2e-05 22.9 0.5 3.0 2 1 1 3 3 3 3 Prenyltransferase-like DUF1049 PF06305.6 gi|57641773|ref|YP_184251.1| - 0.013 14.9 0.1 0.028 13.9 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1049) A2M_comp PF07678.9 gi|57641773|ref|YP_184251.1| - 0.021 14.0 0.7 8.5 5.5 0.1 3.0 2 1 0 3 3 3 0 A-macroglobulin complement component Prenyltrans PF00432.16 gi|57641773|ref|YP_184251.1| - 0.65 9.6 0.0 0.65 9.6 0.0 4.3 5 0 0 5 5 5 0 Prenyltransferase and squalene oxidase repeat Y_Y_Y PF07495.8 gi|57641774|ref|YP_184252.1| - 1.5e-27 95.1 15.9 0.00043 19.9 0.1 6.6 6 0 0 6 6 6 6 Y_Y_Y domain Big_3_4 PF13754.1 gi|57641774|ref|YP_184252.1| - 5.4e-15 55.4 40.8 0.0076 16.5 0.3 8.8 8 2 1 9 9 9 6 Bacterial Ig-like domain (group 3) Cna_B PF05738.8 gi|57641774|ref|YP_184252.1| - 9.1e-11 41.3 15.5 0.043 13.5 0.3 7.3 7 0 0 7 7 7 3 Cna protein B-type domain Kelch_3 PF13415.1 gi|57641774|ref|YP_184252.1| - 0.007 16.4 23.1 4.1 7.7 0.1 6.5 6 0 0 6 6 6 2 Galactose oxidase, central domain Big_3_2 PF12245.3 gi|57641774|ref|YP_184252.1| - 0.012 15.1 0.5 3.3 7.3 0.0 4.2 4 0 0 4 4 4 0 Bacterial Ig-like domain (group 3) RHS PF03527.9 gi|57641774|ref|YP_184252.1| - 0.035 13.8 16.3 19 5.1 0.1 6.9 6 1 1 7 7 7 0 RHS protein DUF3389 PF11869.3 gi|57641774|ref|YP_184252.1| - 0.13 12.1 0.3 16 5.4 0.0 3.2 1 1 1 2 2 2 0 Protein of unknown function (DUF3389) DUF2314 PF10077.4 gi|57641774|ref|YP_184252.1| - 1.2 9.1 8.4 6.9 6.7 0.1 4.5 5 0 0 5 5 5 0 Uncharacterized protein conserved in bacteria (DUF2314) FlgD_ig PF13860.1 gi|57641774|ref|YP_184252.1| - 3.8 7.3 27.1 9.3 6.0 0.0 8.3 8 0 0 8 8 8 0 FlgD Ig-like domain Peptidase_M32 PF02074.10 gi|57641775|ref|YP_184253.1| - 3.2e-241 801.2 5.3 3.6e-241 801.0 3.7 1.0 1 0 0 1 1 1 1 Carboxypeptidase Taq (M32) metallopeptidase Peptidase_M3 PF01432.15 gi|57641775|ref|YP_184253.1| - 0.011 14.7 1.5 2.8 6.8 0.1 2.9 3 0 0 3 3 3 0 Peptidase family M3 GIDA_assoc_3 PF13932.1 gi|57641775|ref|YP_184253.1| - 0.069 13.2 0.0 0.2 11.7 0.0 1.7 1 0 0 1 1 1 0 GidA associated domain 3 HemN_C PF06969.11 gi|57641775|ref|YP_184253.1| - 0.097 12.7 1.5 3.5 7.7 0.1 2.8 2 0 0 2 2 2 0 HemN C-terminal domain Resolvase PF00239.16 gi|57641776|ref|YP_184254.1| - 2.3e-21 76.1 0.3 2.9e-21 75.8 0.2 1.1 1 0 0 1 1 1 1 Resolvase, N terminal domain HTH_17 PF12728.2 gi|57641776|ref|YP_184254.1| - 4e-12 46.1 0.7 8.3e-12 45.1 0.5 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_8 PF02954.14 gi|57641776|ref|YP_184254.1| - 0.0035 16.8 0.2 0.0093 15.4 0.1 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, Fis family UPF0102 PF02021.12 gi|57641776|ref|YP_184254.1| - 0.016 15.1 0.0 0.033 14.0 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised protein family UPF0102 IL6 PF00489.12 gi|57641776|ref|YP_184254.1| - 0.054 13.0 0.0 0.081 12.5 0.0 1.4 1 0 0 1 1 1 0 Interleukin-6/G-CSF/MGF family B12-binding PF02310.14 gi|57641776|ref|YP_184254.1| - 0.12 12.2 0.0 0.94 9.3 0.0 2.1 2 0 0 2 2 2 0 B12 binding domain OrfB_Zn_ribbon PF07282.6 gi|57641777|ref|YP_184255.1| - 6.9e-27 92.9 0.0 1.7e-26 91.6 0.0 1.7 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|57641777|ref|YP_184255.1| - 9.6e-16 57.8 1.9 1.5e-15 57.2 1.3 1.3 1 0 0 1 1 1 1 Probable transposase Baculo_ME53 PF06061.6 gi|57641777|ref|YP_184255.1| - 0.0016 17.5 2.2 0.011 14.7 0.0 2.3 2 0 0 2 2 2 1 Baculoviridae ME53 DZR PF12773.2 gi|57641777|ref|YP_184255.1| - 0.0027 17.5 0.4 0.0047 16.7 0.3 1.3 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|57641777|ref|YP_184255.1| - 0.0047 16.3 2.7 0.01 15.3 1.9 1.6 1 0 0 1 1 1 1 zinc-ribbon domain Prok-RING_1 PF14446.1 gi|57641777|ref|YP_184255.1| - 0.0089 15.7 0.1 0.016 14.9 0.1 1.3 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 zf-ribbon_3 PF13248.1 gi|57641777|ref|YP_184255.1| - 0.031 13.4 2.5 0.073 12.3 1.7 1.6 1 1 0 1 1 1 0 zinc-ribbon domain HypA PF01155.14 gi|57641777|ref|YP_184255.1| - 0.086 12.5 0.0 0.13 11.9 0.0 1.4 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family C1_1 PF00130.17 gi|57641777|ref|YP_184255.1| - 0.088 12.5 0.1 0.16 11.6 0.1 1.4 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) TAF8_C PF10406.4 gi|57641777|ref|YP_184255.1| - 0.093 12.7 4.1 3.3 7.8 0.6 2.8 2 1 0 2 2 2 0 Transcription factor TFIID complex subunit 8 C-term zf-Mss51 PF13824.1 gi|57641777|ref|YP_184255.1| - 0.18 11.6 1.8 0.43 10.4 1.3 1.6 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 DUF1610 PF07754.6 gi|57641777|ref|YP_184255.1| - 4.2 7.5 7.9 17 5.6 2.3 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) Rad50_zn_hook PF04423.9 gi|57641777|ref|YP_184255.1| - 9.3 5.8 11.4 0.29 10.6 0.2 3.2 2 1 0 2 2 2 0 Rad50 zinc hook motif PfkB PF00294.19 gi|57641778|ref|YP_184256.1| - 2e-42 145.3 0.0 2.5e-42 145.0 0.0 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.7 gi|57641778|ref|YP_184256.1| - 1e-06 28.1 0.0 1.7e-06 27.4 0.0 1.2 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase DUF58 PF01882.13 gi|57641780|ref|YP_184258.1| - 3.8e-23 81.4 0.0 8.3e-23 80.3 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function DUF58 VWA_3 PF13768.1 gi|57641780|ref|YP_184258.1| - 0.0092 15.6 0.0 0.015 14.9 0.0 1.3 1 0 0 1 1 1 1 von Willebrand factor type A domain AAA_3 PF07726.6 gi|57641781|ref|YP_184259.1| - 8.6e-68 225.9 0.0 1.4e-67 225.3 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|57641781|ref|YP_184259.1| - 1e-10 41.4 0.0 2.3e-10 40.3 0.0 1.6 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) MCM PF00493.18 gi|57641781|ref|YP_184259.1| - 9.8e-06 24.5 0.0 0.00058 18.7 0.0 2.6 2 1 0 2 2 2 1 MCM2/3/5 family Sigma54_activat PF00158.21 gi|57641781|ref|YP_184259.1| - 0.00016 21.1 0.0 0.00087 18.7 0.0 2.1 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA PF00004.24 gi|57641781|ref|YP_184259.1| - 0.00021 21.4 0.0 0.00035 20.7 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.7 gi|57641781|ref|YP_184259.1| - 0.019 14.0 0.1 0.14 11.2 0.0 2.4 1 1 0 1 1 1 0 Holliday junction DNA helicase ruvB N-terminus DUF4129 PF13559.1 gi|57641783|ref|YP_184261.1| - 6.5e-11 42.0 0.1 1.2e-10 41.2 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4129) DUF898 PF05987.8 gi|57641783|ref|YP_184261.1| - 0.29 9.9 5.9 2.8 6.7 0.9 2.1 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF898) DUF202 PF02656.10 gi|57641783|ref|YP_184261.1| - 5 7.4 7.1 0.5 10.6 0.7 2.2 2 1 0 2 2 2 0 Domain of unknown function (DUF202) DUF2118 PF09891.4 gi|57641784|ref|YP_184262.1| - 5.7e-60 201.3 0.9 6.5e-60 201.1 0.6 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2118) DUF3954 PF13128.1 gi|57641784|ref|YP_184262.1| - 0.0025 17.2 0.0 0.17 11.3 0.0 3.0 2 1 0 2 2 2 1 Protein of unknown function (DUF3954) CofC PF01983.11 gi|57641784|ref|YP_184262.1| - 0.034 13.1 0.0 0.044 12.7 0.0 1.2 1 0 0 1 1 1 0 Guanylyl transferase CofC like DUF4374 PF14298.1 gi|57641784|ref|YP_184262.1| - 0.15 10.6 0.0 0.18 10.3 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4374) FKBP_C PF00254.23 gi|57641785|ref|YP_184263.1| - 4.7e-25 87.4 0.1 7.2e-25 86.8 0.1 1.3 1 0 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase T2SF PF00482.18 gi|57641786|ref|YP_184264.1| - 4.3e-18 65.4 1.2 4.3e-18 65.4 0.8 3.2 3 1 1 4 4 4 1 Type II secretion system (T2SS), protein F DUF3487 PF11990.3 gi|57641786|ref|YP_184264.1| - 0.0078 15.6 0.2 0.0078 15.6 0.1 2.8 2 1 0 2 2 2 1 Protein of unknown function (DUF3487) DUF373 PF04123.8 gi|57641786|ref|YP_184264.1| - 2.5 7.0 13.0 1 8.3 0.7 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF373) T2SF PF00482.18 gi|57641787|ref|YP_184265.1| - 1.6e-20 73.2 2.4 1.6e-20 73.2 1.7 3.8 4 0 0 4 4 4 1 Type II secretion system (T2SS), protein F DUF2207 PF09972.4 gi|57641787|ref|YP_184265.1| - 0.0022 16.6 3.7 0.42 9.1 0.0 2.1 2 0 0 2 2 2 2 Predicted membrane protein (DUF2207) EH_Signature PF15611.1 gi|57641787|ref|YP_184265.1| - 0.0096 15.0 0.1 0.014 14.4 0.1 1.2 1 0 0 1 1 1 1 EH_Signature domain PEX11 PF05648.9 gi|57641787|ref|YP_184265.1| - 0.084 12.1 1.8 0.54 9.4 0.0 2.3 2 0 0 2 2 2 0 Peroxisomal biogenesis factor 11 (PEX11) RseC_MucC PF04246.7 gi|57641787|ref|YP_184265.1| - 0.11 12.0 11.4 0.042 13.4 0.8 2.3 2 0 0 2 2 2 0 Positive regulator of sigma(E), RseC/MucC DUF4174 PF13778.1 gi|57641787|ref|YP_184265.1| - 0.22 11.6 2.4 0.2 11.7 0.3 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4174) DUF3561 PF12084.3 gi|57641787|ref|YP_184265.1| - 0.52 10.1 14.8 0.046 13.5 5.2 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3561) T2SE PF00437.15 gi|57641788|ref|YP_184266.1| - 2e-58 197.4 0.0 2.5e-55 187.2 0.0 2.4 2 0 0 2 2 2 2 Type II/IV secretion system protein LAGLIDADG_3 PF14528.1 gi|57641788|ref|YP_184266.1| - 5.5e-17 61.7 0.1 2.8e-14 53.0 0.0 2.9 2 0 0 2 2 2 1 LAGLIDADG-like domain Intein_splicing PF14890.1 gi|57641788|ref|YP_184266.1| - 9.2e-15 54.3 0.0 1e-13 50.9 0.0 2.2 1 1 0 1 1 1 1 Intein splicing domain Hom_end PF05204.9 gi|57641788|ref|YP_184266.1| - 5.8e-06 26.2 0.0 0.00047 20.0 0.0 2.5 2 0 0 2 2 2 1 Homing endonuclease LAGLIDADG_WhiA PF14527.1 gi|57641788|ref|YP_184266.1| - 0.00019 21.2 0.0 0.38 10.6 0.0 2.6 2 0 0 2 2 2 2 WhiA LAGLIDADG-like domain FtsK_SpoIIIE PF01580.13 gi|57641788|ref|YP_184266.1| - 0.00026 20.5 0.5 0.00069 19.1 0.2 1.8 2 0 0 2 2 2 1 FtsK/SpoIIIE family HTH_31 PF13560.1 gi|57641788|ref|YP_184266.1| - 0.0016 18.5 0.3 0.0053 16.9 0.1 2.0 2 0 0 2 2 1 1 Helix-turn-helix domain PT-HINT PF07591.6 gi|57641788|ref|YP_184266.1| - 0.011 15.5 0.1 0.12 12.3 0.0 2.4 2 0 0 2 2 2 0 Pretoxin HINT domain ORC4_C PF14629.1 gi|57641788|ref|YP_184266.1| - 0.013 14.8 0.0 0.024 14.0 0.0 1.3 1 0 0 1 1 1 0 Origin recognition complex (ORC) subunit 4 C-terminus AAA_29 PF13555.1 gi|57641788|ref|YP_184266.1| - 0.017 14.6 0.1 0.048 13.1 0.0 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_18 PF13238.1 gi|57641788|ref|YP_184266.1| - 0.019 15.2 0.5 0.3 11.3 0.0 2.9 2 0 0 2 2 2 0 AAA domain NSP2_assoc PF14758.1 gi|57641788|ref|YP_184266.1| - 0.076 13.1 0.2 0.15 12.1 0.1 1.4 1 0 0 1 1 1 0 Non-essential region of nsp2 of arterivirus polyprotein AAA_24 PF13479.1 gi|57641788|ref|YP_184266.1| - 0.081 12.4 0.0 0.16 11.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain Hint PF01079.15 gi|57641788|ref|YP_184266.1| - 0.094 11.9 0.0 0.16 11.1 0.0 1.3 1 0 0 1 1 1 0 Hint module AAA_10 PF12846.2 gi|57641788|ref|YP_184266.1| - 0.11 11.9 0.4 0.51 9.7 0.1 2.1 2 0 0 2 2 2 0 AAA-like domain Zeta_toxin PF06414.7 gi|57641788|ref|YP_184266.1| - 0.11 11.6 0.1 0.23 10.5 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin Ribosomal_L39 PF00832.15 gi|57641789|ref|YP_184267.1| - 0.11 11.9 0.0 0.2 11.1 0.0 1.3 1 0 0 1 1 1 0 Ribosomal L39 protein DUF515 PF04415.7 gi|57641790|ref|YP_184268.1| - 2.3e-170 566.3 18.6 2.6e-170 566.1 12.9 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF515) DUF3529 PF12046.3 gi|57641790|ref|YP_184268.1| - 0.023 13.7 0.2 0.08 11.9 0.1 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3529) GA PF01468.12 gi|57641790|ref|YP_184268.1| - 0.28 11.3 5.5 0.67 10.1 0.1 3.4 3 0 0 3 3 3 0 GA module DUF1510 PF07423.6 gi|57641790|ref|YP_184268.1| - 2.4 7.4 8.6 2 7.7 1.8 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF1510) DUF1542 PF07564.6 gi|57641790|ref|YP_184268.1| - 2.6 8.1 12.1 0.75 9.8 1.5 3.5 3 1 1 4 4 4 0 Domain of Unknown Function (DUF1542) Caudo_TAP PF02413.12 gi|57641790|ref|YP_184268.1| - 3.5 7.8 7.4 0.58 10.3 1.1 2.6 2 1 0 3 3 3 0 Caudovirales tail fibre assembly protein MMR_HSR1 PF01926.18 gi|57641792|ref|YP_184270.1| - 7.5e-18 64.5 0.4 3.6e-13 49.4 0.0 2.5 2 0 0 2 2 2 2 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|57641792|ref|YP_184270.1| - 4.9e-13 48.6 0.1 5e-06 25.8 0.0 2.4 2 0 0 2 2 2 2 Ferrous iron transport protein B GTP_EFTU PF00009.22 gi|57641792|ref|YP_184270.1| - 2.6e-07 30.2 0.2 3e-05 23.5 0.0 3.2 3 1 0 3 3 3 1 Elongation factor Tu GTP binding domain Arf PF00025.16 gi|57641792|ref|YP_184270.1| - 7.5e-07 28.5 1.4 0.0046 16.2 0.1 2.2 2 0 0 2 2 2 2 ADP-ribosylation factor family DUF258 PF03193.11 gi|57641792|ref|YP_184270.1| - 1.4e-05 24.3 0.0 2.8e-05 23.3 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 Dynamin_N PF00350.18 gi|57641792|ref|YP_184270.1| - 1.5e-05 24.8 0.2 0.41 10.4 0.0 3.0 2 1 1 3 3 3 2 Dynamin family G-alpha PF00503.15 gi|57641792|ref|YP_184270.1| - 0.016 13.9 0.0 0.026 13.2 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit NTPase_1 PF03266.10 gi|57641792|ref|YP_184270.1| - 0.057 13.1 1.4 7.4 6.2 0.1 2.9 2 1 0 2 2 2 0 NTPase Miro PF08477.8 gi|57641792|ref|YP_184270.1| - 0.073 13.5 0.2 1.1 9.8 0.0 2.8 2 1 1 3 3 3 0 Miro-like protein cobW PF02492.14 gi|57641792|ref|YP_184270.1| - 0.096 12.1 0.7 0.63 9.4 0.0 2.1 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain FtsX PF02687.16 gi|57641793|ref|YP_184271.1| - 4.4e-17 61.9 21.4 6e-10 38.9 6.3 3.3 4 0 0 4 4 4 2 FtsX-like permease family MacB_PCD PF12704.2 gi|57641793|ref|YP_184271.1| - 2.4e-12 46.9 0.7 1.2e-10 41.3 0.0 2.8 3 0 0 3 3 3 2 MacB-like periplasmic core domain ABC_tran PF00005.22 gi|57641794|ref|YP_184272.1| - 3.6e-30 105.0 0.0 4.9e-30 104.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|57641794|ref|YP_184272.1| - 1e-13 51.8 0.6 7e-08 32.7 0.0 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|57641794|ref|YP_184272.1| - 5.3e-07 29.0 0.2 0.00016 21.0 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|57641794|ref|YP_184272.1| - 8e-05 21.8 0.0 0.097 11.7 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain DUF258 PF03193.11 gi|57641794|ref|YP_184272.1| - 0.00043 19.4 0.0 0.00065 18.9 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_18 PF13238.1 gi|57641794|ref|YP_184272.1| - 0.0015 18.8 2.6 0.019 15.2 1.8 2.3 1 1 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|57641794|ref|YP_184272.1| - 0.0019 17.6 0.3 0.34 10.3 0.1 2.1 2 0 0 2 2 2 1 AAA-like domain AAA_29 PF13555.1 gi|57641794|ref|YP_184272.1| - 0.0028 17.1 0.3 0.0056 16.1 0.2 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_17 PF13207.1 gi|57641794|ref|YP_184272.1| - 0.0029 18.4 1.3 0.0082 16.9 0.9 2.1 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|57641794|ref|YP_184272.1| - 0.0036 17.4 0.0 0.11 12.5 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_28 PF13521.1 gi|57641794|ref|YP_184272.1| - 0.0038 17.2 0.1 0.014 15.3 0.0 1.9 2 1 1 3 3 3 1 AAA domain AAA_25 PF13481.1 gi|57641794|ref|YP_184272.1| - 0.0065 15.8 0.1 0.079 12.3 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|57641794|ref|YP_184272.1| - 0.0075 16.2 0.0 0.013 15.5 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.1 gi|57641794|ref|YP_184272.1| - 0.012 15.9 3.2 0.015 15.6 1.2 1.7 2 0 0 2 2 2 0 AAA domain PIF1 PF05970.9 gi|57641794|ref|YP_184272.1| - 0.017 14.0 0.2 1.3 7.8 0.0 2.1 2 0 0 2 2 2 0 PIF1-like helicase T2SE PF00437.15 gi|57641794|ref|YP_184272.1| - 0.018 13.9 0.2 0.028 13.3 0.1 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_14 PF13173.1 gi|57641794|ref|YP_184272.1| - 0.021 14.7 0.1 0.41 10.5 0.0 2.3 2 0 0 2 2 2 0 AAA domain Mg_chelatase PF01078.16 gi|57641794|ref|YP_184272.1| - 0.024 13.8 0.0 0.041 13.0 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI cobW PF02492.14 gi|57641794|ref|YP_184272.1| - 0.033 13.6 0.1 0.086 12.2 0.0 1.7 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain NACHT PF05729.7 gi|57641794|ref|YP_184272.1| - 0.045 13.4 0.0 0.11 12.1 0.0 1.7 2 0 0 2 2 2 0 NACHT domain AAA_19 PF13245.1 gi|57641794|ref|YP_184272.1| - 0.049 13.3 0.0 0.15 11.8 0.0 1.8 2 0 0 2 2 1 0 Part of AAA domain Arch_ATPase PF01637.13 gi|57641794|ref|YP_184272.1| - 0.049 13.3 0.6 0.097 12.3 0.4 1.9 1 1 0 1 1 1 0 Archaeal ATPase AAA_30 PF13604.1 gi|57641794|ref|YP_184272.1| - 0.051 13.1 0.0 0.099 12.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain FtsK_SpoIIIE PF01580.13 gi|57641794|ref|YP_184272.1| - 0.057 12.8 0.0 0.099 12.1 0.0 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family Zeta_toxin PF06414.7 gi|57641794|ref|YP_184272.1| - 0.057 12.4 0.0 0.14 11.1 0.0 1.7 2 0 0 2 2 2 0 Zeta toxin ABC_ATPase PF09818.4 gi|57641794|ref|YP_184272.1| - 0.084 11.4 0.1 3.6 6.0 0.1 2.6 2 1 0 2 2 2 0 Predicted ATPase of the ABC class Rad17 PF03215.10 gi|57641794|ref|YP_184272.1| - 0.087 11.4 0.0 0.1 11.2 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein DUF3671 PF12420.3 gi|57641794|ref|YP_184272.1| - 0.11 12.4 0.0 0.22 11.5 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function NTPase_1 PF03266.10 gi|57641794|ref|YP_184272.1| - 0.12 12.1 0.2 0.42 10.2 0.0 1.8 2 0 0 2 2 2 0 NTPase MMR_HSR1 PF01926.18 gi|57641794|ref|YP_184272.1| - 0.13 12.2 0.5 0.23 11.4 0.3 1.8 1 1 0 1 1 1 0 50S ribosome-binding GTPase BPD_transp_1 PF00528.17 gi|57641795|ref|YP_184273.1| - 9e-09 35.0 20.5 9e-09 35.0 14.2 1.9 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|57641796|ref|YP_184274.1| - 7.6e-22 77.7 16.6 7.6e-22 77.7 11.5 1.9 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component TarH PF02203.10 gi|57641796|ref|YP_184274.1| - 3 7.6 4.5 1.5 8.6 0.0 2.2 2 0 0 2 2 2 0 Tar ligand binding domain homologue UPF0020 PF01170.13 gi|57641798|ref|YP_184276.1| - 4.9e-51 172.8 0.0 6.7e-51 172.4 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 THUMP PF02926.12 gi|57641798|ref|YP_184276.1| - 2.3e-28 98.9 1.3 3.6e-28 98.2 0.9 1.4 1 0 0 1 1 1 1 THUMP domain Methyltransf_26 PF13659.1 gi|57641798|ref|YP_184276.1| - 7e-18 64.7 0.0 1.9e-17 63.3 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|57641798|ref|YP_184276.1| - 4.5e-13 49.0 0.0 8.1e-13 48.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|57641798|ref|YP_184276.1| - 3.6e-08 33.9 0.0 7.9e-08 32.8 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.5 gi|57641798|ref|YP_184276.1| - 4.5e-07 29.5 0.0 7e-07 28.9 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase N6_N4_Mtase PF01555.13 gi|57641798|ref|YP_184276.1| - 2.1e-06 27.4 0.0 4e-06 26.4 0.0 1.4 1 0 0 1 1 1 1 DNA methylase MTS PF05175.9 gi|57641798|ref|YP_184276.1| - 2.9e-06 26.7 0.0 4.4e-06 26.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_11 PF08241.7 gi|57641798|ref|YP_184276.1| - 6e-05 23.4 0.0 0.00018 21.9 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain N6_Mtase PF02384.11 gi|57641798|ref|YP_184276.1| - 0.00025 20.2 0.0 0.00041 19.5 0.0 1.2 1 0 0 1 1 1 1 N-6 DNA Methylase Methyltransf_25 PF13649.1 gi|57641798|ref|YP_184276.1| - 0.0004 20.6 0.0 0.00079 19.7 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_4 PF02390.12 gi|57641798|ref|YP_184276.1| - 0.0015 17.6 0.0 0.0055 15.7 0.0 1.8 2 0 0 2 2 2 1 Putative methyltransferase Ubie_methyltran PF01209.13 gi|57641798|ref|YP_184276.1| - 0.0016 17.6 0.0 0.0024 17.0 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_3 PF01596.12 gi|57641798|ref|YP_184276.1| - 0.012 14.6 0.0 0.021 13.8 0.0 1.3 1 0 0 1 1 1 0 O-methyltransferase Cons_hypoth95 PF03602.10 gi|57641798|ref|YP_184276.1| - 0.019 14.3 0.0 0.03 13.7 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical protein 95 PBP_like_2 PF12849.2 gi|57641799|ref|YP_184277.1| - 1.8e-54 185.0 0.9 2.5e-54 184.6 0.6 1.0 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_1 PF01547.20 gi|57641799|ref|YP_184277.1| - 8e-19 68.4 6.1 1e-18 68.1 4.2 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein PBP_like PF12727.2 gi|57641799|ref|YP_184277.1| - 2.3e-06 26.6 0.1 4e-05 22.6 0.1 2.3 1 1 0 1 1 1 1 PBP superfamily domain AP_endonuc_2 PF01261.19 gi|57641800|ref|YP_184278.1| - 1.9e-25 89.4 0.2 2.6e-25 88.9 0.1 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel BPD_transp_1 PF00528.17 gi|57641801|ref|YP_184279.1| - 1.4e-11 44.3 19.2 1.4e-11 44.3 13.3 2.5 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|57641802|ref|YP_184280.1| - 7.9e-15 54.8 14.5 7.9e-15 54.8 10.0 2.3 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component FtsX PF02687.16 gi|57641802|ref|YP_184280.1| - 0.014 15.1 5.3 0.014 15.1 3.7 3.5 2 1 1 3 3 3 0 FtsX-like permease family ABC_tran PF00005.22 gi|57641803|ref|YP_184281.1| - 7.9e-33 113.6 0.0 1.1e-32 113.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|57641803|ref|YP_184281.1| - 1.3e-12 48.2 0.0 2.1e-08 34.4 0.0 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|57641803|ref|YP_184281.1| - 6.1e-05 22.3 0.0 0.0013 17.9 0.0 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|57641803|ref|YP_184281.1| - 0.00052 20.0 0.0 0.00085 19.3 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.1 gi|57641803|ref|YP_184281.1| - 0.00066 19.1 0.0 0.0012 18.3 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|57641803|ref|YP_184281.1| - 0.0012 19.0 0.0 0.0028 17.8 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|57641803|ref|YP_184281.1| - 0.0013 19.0 0.0 0.0031 17.8 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|57641803|ref|YP_184281.1| - 0.0016 17.5 0.0 0.011 14.7 0.0 1.9 2 0 0 2 2 2 1 AAA ATPase domain DUF258 PF03193.11 gi|57641803|ref|YP_184281.1| - 0.0028 16.8 0.0 0.0049 16.0 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_30 PF13604.1 gi|57641803|ref|YP_184281.1| - 0.015 14.8 0.0 0.036 13.6 0.0 1.5 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.1 gi|57641803|ref|YP_184281.1| - 0.017 14.8 0.0 0.86 9.4 0.0 2.3 2 0 0 2 2 2 0 Part of AAA domain PRK PF00485.13 gi|57641803|ref|YP_184281.1| - 0.018 14.5 0.0 0.029 13.9 0.0 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA PF00004.24 gi|57641803|ref|YP_184281.1| - 0.029 14.5 0.0 2.4 8.3 0.0 2.3 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|57641803|ref|YP_184281.1| - 0.034 13.8 0.0 0.065 12.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) Rad17 PF03215.10 gi|57641803|ref|YP_184281.1| - 0.04 12.6 0.0 0.061 11.9 0.0 1.2 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA_33 PF13671.1 gi|57641803|ref|YP_184281.1| - 0.052 13.4 0.0 0.12 12.1 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|57641803|ref|YP_184281.1| - 0.062 13.1 0.0 0.12 12.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|57641803|ref|YP_184281.1| - 0.073 13.8 0.1 0.27 12.0 0.1 2.0 1 1 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|57641803|ref|YP_184281.1| - 0.081 13.1 0.0 0.23 11.6 0.0 1.8 2 0 0 2 2 2 0 RNA helicase G-alpha PF00503.15 gi|57641803|ref|YP_184281.1| - 0.13 10.8 0.0 0.18 10.4 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit PhoU PF01895.14 gi|57641804|ref|YP_184282.1| - 0.053 13.9 0.3 0.13 12.7 0.2 1.8 1 1 0 1 1 1 0 PhoU domain PhoU PF01895.14 gi|57641805|ref|YP_184283.1| - 1.1e-19 70.6 7.8 1.2e-12 48.0 0.6 2.2 2 0 0 2 2 2 2 PhoU domain PhoU_div PF01865.11 gi|57641805|ref|YP_184283.1| - 0.0003 20.0 1.0 0.0003 20.0 0.7 1.7 2 0 0 2 2 2 1 Protein of unknown function DUF47 Shikimate_dh_N PF08501.6 gi|57641805|ref|YP_184283.1| - 0.058 13.4 0.0 1.1 9.3 0.0 2.6 2 1 0 2 2 2 0 Shikimate dehydrogenase substrate binding domain COG5 PF10392.4 gi|57641805|ref|YP_184283.1| - 0.087 12.7 2.0 0.42 10.5 0.3 2.1 2 0 0 2 2 2 0 Golgi transport complex subunit 5 DUF3239 PF11580.3 gi|57641805|ref|YP_184283.1| - 0.099 12.6 0.0 0.15 12.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3239) Amidohydro_4 PF13147.1 gi|57641805|ref|YP_184283.1| - 0.12 12.4 0.0 0.14 12.1 0.0 1.0 1 0 0 1 1 1 0 Amidohydrolase DUF1883 PF08980.5 gi|57641806|ref|YP_184284.1| - 0.0083 15.6 0.2 0.012 15.1 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1883) FAA_hydrolase PF01557.13 gi|57641807|ref|YP_184285.1| - 1.9e-70 236.7 0.0 2.3e-70 236.4 0.0 1.0 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family Peptidase_MA_2 PF13485.1 gi|57641808|ref|YP_184286.1| - 4.2e-07 30.0 0.7 8.4e-07 29.0 0.5 1.5 1 0 0 1 1 1 1 Peptidase MA superfamily LptC PF06835.8 gi|57641808|ref|YP_184286.1| - 0.043 13.2 0.0 3.1 7.1 0.0 2.7 3 0 0 3 3 3 0 Lipopolysaccharide-assembly, LptC-related SpoIIIAH PF12685.2 gi|57641808|ref|YP_184286.1| - 0.063 12.7 0.0 0.092 12.2 0.0 1.2 1 0 0 1 1 1 0 SpoIIIAH-like protein Lipoprotein_19 PF13617.1 gi|57641808|ref|YP_184286.1| - 0.45 10.1 1.8 2.9 7.5 0.2 2.5 2 0 0 2 2 2 0 YnbE-like lipoprotein tRNA-synt_1b PF00579.20 gi|57641809|ref|YP_184287.1| - 3.5e-27 95.3 0.0 4.9e-27 94.8 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (W and Y) DUF104 PF01954.11 gi|57641810|ref|YP_184288.1| - 1.4e-16 60.2 4.7 1.5e-16 60.1 3.3 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF104 S10_plectin PF03501.10 gi|57641810|ref|YP_184288.1| - 0.079 12.8 0.1 0.082 12.7 0.0 1.2 1 0 0 1 1 1 0 Plectin/S10 domain EamA PF00892.15 gi|57641811|ref|YP_184289.1| - 4.4e-25 88.1 37.4 3.6e-14 52.8 10.4 2.4 2 0 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|57641811|ref|YP_184289.1| - 1.4e-10 41.3 26.6 3.8e-10 39.9 6.6 2.6 2 1 0 2 2 2 2 Multidrug resistance efflux transporter TPT PF03151.11 gi|57641811|ref|YP_184289.1| - 0.015 14.9 17.3 0.18 11.4 3.1 2.8 2 1 0 2 2 2 0 Triose-phosphate Transporter family DUF1290 PF06947.7 gi|57641811|ref|YP_184289.1| - 0.057 13.3 5.5 0.3 11.0 0.4 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1290) PIRT PF15099.1 gi|57641811|ref|YP_184289.1| - 0.35 10.0 7.7 0.76 8.9 2.2 2.5 2 0 0 2 2 2 0 Phosphoinositide-interacting protein family UPF0546 PF10639.4 gi|57641811|ref|YP_184289.1| - 2.6 7.9 6.5 1.8 8.3 0.7 2.4 2 0 0 2 2 2 0 Uncharacterised protein family UPF0546 Arch_ATPase PF01637.13 gi|57641812|ref|YP_184290.1| - 1.7e-38 132.6 0.4 3.8e-38 131.4 0.2 1.6 1 0 0 1 1 1 1 Archaeal ATPase DUF234 PF03008.9 gi|57641812|ref|YP_184290.1| - 1.5e-33 114.8 2.7 3.4e-33 113.7 1.8 1.6 1 0 0 1 1 1 1 Archaea bacterial proteins of unknown function AAA_22 PF13401.1 gi|57641812|ref|YP_184290.1| - 1.8e-09 37.7 0.0 4.9e-09 36.4 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_14 PF13173.1 gi|57641812|ref|YP_184290.1| - 2.7e-08 33.7 0.0 5.8e-08 32.7 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|57641812|ref|YP_184290.1| - 3.6e-07 30.3 0.0 1.4e-06 28.4 0.0 1.8 1 1 1 2 2 2 1 AAA ATPase domain HTH_IclR PF09339.5 gi|57641812|ref|YP_184290.1| - 3.7e-05 23.2 0.0 7.3e-05 22.2 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain AAA PF00004.24 gi|57641812|ref|YP_184290.1| - 0.0014 18.7 0.1 0.0034 17.5 0.0 1.7 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) HTH_5 PF01022.15 gi|57641812|ref|YP_184290.1| - 0.0068 16.0 0.0 0.018 14.7 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Lactamase_B_2 PF12706.2 gi|57641813|ref|YP_184291.1| - 3.4e-22 78.9 1.8 4.2e-22 78.6 1.3 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|57641813|ref|YP_184291.1| - 9.5e-14 51.4 3.0 1.2e-13 51.1 2.1 1.1 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.1 gi|57641813|ref|YP_184291.1| - 2.8e-10 40.1 0.0 3.8e-10 39.6 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain PDEase_II PF02112.10 gi|57641813|ref|YP_184291.1| - 0.0027 16.6 0.2 0.029 13.2 0.3 2.0 1 1 1 2 2 2 1 cAMP phosphodiesterases class-II Sgf11 PF08209.6 gi|57641813|ref|YP_184291.1| - 0.21 10.9 1.7 0.5 9.7 1.2 1.6 1 0 0 1 1 1 0 Sgf11 (transcriptional regulation protein) DUF3240 PF11582.3 gi|57641814|ref|YP_184292.1| - 0.086 12.7 0.1 0.2 11.6 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3240) NIF PF03031.13 gi|57641814|ref|YP_184292.1| - 0.093 12.3 0.0 0.19 11.4 0.0 1.4 1 0 0 1 1 1 0 NLI interacting factor-like phosphatase Succ_CoA_lig PF13607.1 gi|57641815|ref|YP_184293.1| - 1.2e-59 199.8 1.3 4.4e-57 191.5 0.2 3.5 3 1 1 4 4 4 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.1 gi|57641815|ref|YP_184293.1| - 9.3e-27 93.5 2.3 8e-25 87.2 0.6 2.7 2 0 0 2 2 2 1 CoA binding domain CoA_binding PF02629.14 gi|57641815|ref|YP_184293.1| - 2.2e-19 69.7 6.0 1.2e-18 67.3 1.7 2.8 2 1 1 3 3 3 1 CoA binding domain F420_oxidored PF03807.12 gi|57641815|ref|YP_184293.1| - 0.014 15.7 2.4 0.031 14.7 0.2 2.7 3 0 0 3 3 3 0 NADP oxidoreductase coenzyme F420-dependent NAD_Gly3P_dh_N PF01210.18 gi|57641815|ref|YP_184293.1| - 0.016 14.9 0.0 0.041 13.6 0.0 1.7 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Semialdhyde_dh PF01118.19 gi|57641815|ref|YP_184293.1| - 0.03 14.6 0.6 0.59 10.4 0.6 2.8 2 1 0 2 2 2 0 Semialdehyde dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.17 gi|57641815|ref|YP_184293.1| - 0.13 12.7 0.3 1.9 9.0 0.0 2.8 2 1 1 3 3 3 0 Oxidoreductase family, NAD-binding Rossmann fold HTH_20 PF12840.2 gi|57641816|ref|YP_184294.1| - 6.7e-17 61.0 0.1 1.6e-16 59.8 0.1 1.7 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|57641816|ref|YP_184294.1| - 9.1e-16 57.2 0.2 9.1e-16 57.2 0.1 2.7 3 0 0 3 3 3 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|57641816|ref|YP_184294.1| - 7.4e-09 34.8 0.6 7.4e-09 34.8 0.4 2.3 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|57641816|ref|YP_184294.1| - 2.2e-08 33.6 0.9 6.9e-07 28.8 0.1 2.3 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.7 gi|57641816|ref|YP_184294.1| - 4.6e-08 32.5 0.5 1.4e-07 31.0 0.3 1.8 1 0 0 1 1 1 1 HTH domain HTH_23 PF13384.1 gi|57641816|ref|YP_184294.1| - 2.5e-06 26.9 0.0 8e-06 25.3 0.0 1.8 2 0 0 2 2 1 1 Homeodomain-like domain MarR_2 PF12802.2 gi|57641816|ref|YP_184294.1| - 6.4e-06 25.7 0.0 1.2e-05 24.8 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_28 PF13518.1 gi|57641816|ref|YP_184294.1| - 1.3e-05 25.0 0.1 3.3e-05 23.8 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_29 PF13551.1 gi|57641816|ref|YP_184294.1| - 2.2e-05 24.5 0.1 3.9e-05 23.7 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn helix DUF2513 PF10711.4 gi|57641816|ref|YP_184294.1| - 5e-05 23.3 2.8 0.012 15.6 0.1 2.2 2 0 0 2 2 2 2 Hypothetical protein (DUF2513) TFIIE_alpha PF02002.12 gi|57641816|ref|YP_184294.1| - 8.3e-05 22.0 8.8 0.00018 21.0 0.3 2.6 2 1 1 3 3 3 1 TFIIE alpha subunit HTH_34 PF13601.1 gi|57641816|ref|YP_184294.1| - 0.00015 21.7 0.4 0.00071 19.5 0.1 2.1 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_27 PF13463.1 gi|57641816|ref|YP_184294.1| - 0.00015 22.0 0.1 0.00042 20.5 0.1 1.7 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_38 PF13936.1 gi|57641816|ref|YP_184294.1| - 0.00054 19.4 0.4 0.0014 18.1 0.3 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain ArsR PF09824.4 gi|57641816|ref|YP_184294.1| - 0.00081 18.7 2.0 0.0028 17.0 1.1 2.1 1 1 0 1 1 1 1 ArsR transcriptional regulator HTH_Crp_2 PF13545.1 gi|57641816|ref|YP_184294.1| - 0.00095 18.9 0.1 0.0027 17.4 0.1 1.8 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain Fe_dep_repress PF01325.14 gi|57641816|ref|YP_184294.1| - 0.0023 17.8 0.2 0.0088 15.9 0.0 2.0 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain DUF2250 PF10007.4 gi|57641816|ref|YP_184294.1| - 0.0038 17.0 4.0 0.39 10.6 0.4 2.5 2 0 0 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2250) Sigma70_r4_2 PF08281.7 gi|57641816|ref|YP_184294.1| - 0.0039 16.6 1.8 0.005 16.2 0.2 2.0 2 0 0 2 2 1 1 Sigma-70, region 4 Rrf2 PF02082.15 gi|57641816|ref|YP_184294.1| - 0.0083 16.2 0.4 0.024 14.7 0.1 1.9 2 0 0 2 2 1 1 Transcriptional regulator HTH_DeoR PF08220.7 gi|57641816|ref|YP_184294.1| - 0.0084 15.6 2.1 0.012 15.1 0.3 2.0 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain SIR2_2 PF13289.1 gi|57641816|ref|YP_184294.1| - 0.009 15.9 0.1 0.016 15.0 0.1 1.5 1 0 0 1 1 1 1 SIR2-like domain MarR PF01047.17 gi|57641816|ref|YP_184294.1| - 0.0096 15.6 0.4 0.021 14.5 0.3 1.6 1 0 0 1 1 1 1 MarR family Sigma70_r4 PF04545.11 gi|57641816|ref|YP_184294.1| - 0.018 14.3 0.2 0.042 13.1 0.1 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_IclR PF09339.5 gi|57641816|ref|YP_184294.1| - 0.019 14.5 0.0 0.043 13.4 0.0 1.6 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_40 PF14493.1 gi|57641816|ref|YP_184294.1| - 0.023 14.9 3.6 0.11 12.7 2.1 2.4 1 1 1 2 2 2 0 Helix-turn-helix domain HemN_C PF06969.11 gi|57641816|ref|YP_184294.1| - 0.033 14.2 0.0 0.13 12.3 0.0 1.9 1 0 0 1 1 1 0 HemN C-terminal domain MerR_1 PF13411.1 gi|57641816|ref|YP_184294.1| - 0.037 13.7 2.4 0.3 10.9 0.0 2.9 2 1 1 3 3 3 0 MerR HTH family regulatory protein HTH_17 PF12728.2 gi|57641816|ref|YP_184294.1| - 0.038 14.2 0.0 0.087 13.0 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_CodY PF08222.6 gi|57641816|ref|YP_184294.1| - 0.056 12.7 0.1 0.18 11.1 0.0 1.9 2 0 0 2 2 1 0 CodY helix-turn-helix domain PadR PF03551.9 gi|57641816|ref|YP_184294.1| - 0.061 13.0 0.9 0.27 11.0 0.2 2.2 2 0 0 2 2 2 0 Transcriptional regulator PadR-like family DUF592 PF04574.8 gi|57641816|ref|YP_184294.1| - 0.084 12.4 4.4 0.063 12.8 0.7 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF592) HTH_10 PF04967.7 gi|57641816|ref|YP_184294.1| - 0.092 12.3 0.1 0.26 10.9 0.0 1.8 1 0 0 1 1 1 0 HTH DNA binding domain HTH_36 PF13730.1 gi|57641816|ref|YP_184294.1| - 0.13 12.4 0.8 0.26 11.4 0.0 2.0 2 0 0 2 2 1 0 Helix-turn-helix domain NYD-SP28 PF14772.1 gi|57641816|ref|YP_184294.1| - 0.45 10.6 5.0 0.52 10.4 0.3 2.5 2 1 0 2 2 2 0 Sperm tail AAA_23 PF13476.1 gi|57641816|ref|YP_184294.1| - 0.88 9.8 7.5 1.2 9.3 5.2 1.4 1 0 0 1 1 1 0 AAA domain DUF1342 PF07072.6 gi|57641816|ref|YP_184294.1| - 1.4 8.4 4.9 0.68 9.5 0.8 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1342) DUF1456 PF07308.8 gi|57641816|ref|YP_184294.1| - 1.8 8.6 5.6 3.2 7.8 0.6 3.1 2 1 1 3 3 3 0 Protein of unknown function (DUF1456) DUF211 PF02680.9 gi|57641817|ref|YP_184295.1| - 5.3e-40 135.1 1.9 5.9e-40 134.9 1.3 1.0 1 0 0 1 1 1 1 Uncharacterized ArCR, COG1888 Streptin-Immun PF11083.3 gi|57641817|ref|YP_184295.1| - 0.11 12.5 0.2 0.13 12.3 0.2 1.3 1 0 0 1 1 1 0 Lantibiotic streptin immunity protein HTH_20 PF12840.2 gi|57641818|ref|YP_184296.1| - 3.8e-15 55.4 0.0 7.1e-15 54.5 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|57641818|ref|YP_184296.1| - 5.6e-15 54.7 0.4 2.3e-14 52.7 0.0 2.2 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|57641818|ref|YP_184296.1| - 6.2e-11 41.5 0.3 1.4e-10 40.3 0.0 1.8 2 0 0 2 2 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.7 gi|57641818|ref|YP_184296.1| - 1.8e-09 37.0 0.5 7.2e-09 35.1 0.1 2.2 2 0 0 2 2 2 1 HTH domain TrmB PF01978.14 gi|57641818|ref|YP_184296.1| - 7.5e-09 35.1 0.7 2e-08 33.7 0.1 1.9 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|57641818|ref|YP_184296.1| - 1.4e-08 34.2 0.0 3e-08 33.2 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|57641818|ref|YP_184296.1| - 3.2e-08 33.0 0.0 7e-08 31.9 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_23 PF13384.1 gi|57641818|ref|YP_184296.1| - 1.2e-06 27.9 0.0 2.8e-06 26.7 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain MarR PF01047.17 gi|57641818|ref|YP_184296.1| - 1.6e-06 27.6 0.1 5.2e-06 26.0 0.0 1.8 2 0 0 2 2 2 1 MarR family HTH_38 PF13936.1 gi|57641818|ref|YP_184296.1| - 4.2e-06 26.2 0.1 9.6e-06 25.0 0.0 1.7 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|57641818|ref|YP_184296.1| - 1.2e-05 24.9 0.1 0.0033 17.1 0.0 2.6 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_28 PF13518.1 gi|57641818|ref|YP_184296.1| - 1.4e-05 24.9 0.0 2.4e-05 24.2 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.1 gi|57641818|ref|YP_184296.1| - 2.4e-05 24.5 0.4 5.3e-05 23.4 0.1 1.7 2 0 0 2 2 1 1 Winged helix DNA-binding domain FUR PF01475.14 gi|57641818|ref|YP_184296.1| - 2.8e-05 24.0 0.2 5.9e-05 22.9 0.1 1.6 1 1 0 1 1 1 1 Ferric uptake regulator family HTH_29 PF13551.1 gi|57641818|ref|YP_184296.1| - 4.9e-05 23.4 0.0 8.6e-05 22.6 0.0 1.5 1 1 0 1 1 1 1 Winged helix-turn helix GntR PF00392.16 gi|57641818|ref|YP_184296.1| - 5.9e-05 22.4 2.0 0.001 18.4 0.0 2.9 3 0 0 3 3 3 1 Bacterial regulatory proteins, gntR family DUF592 PF04574.8 gi|57641818|ref|YP_184296.1| - 0.00028 20.4 0.1 0.00052 19.5 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF592) HTH_17 PF12728.2 gi|57641818|ref|YP_184296.1| - 0.002 18.3 0.0 0.0042 17.2 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_36 PF13730.1 gi|57641818|ref|YP_184296.1| - 0.002 18.1 0.0 0.0045 17.0 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_42 PF06224.7 gi|57641818|ref|YP_184296.1| - 0.0024 17.2 0.0 0.0031 16.9 0.0 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain B-block_TFIIIC PF04182.7 gi|57641818|ref|YP_184296.1| - 0.01 15.6 0.0 0.018 14.8 0.0 1.4 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC Penicillinase_R PF03965.11 gi|57641818|ref|YP_184296.1| - 0.012 15.7 0.2 0.023 14.7 0.1 1.5 1 0 0 1 1 1 0 Penicillinase repressor HTH_AsnC-type PF13404.1 gi|57641818|ref|YP_184296.1| - 0.012 15.0 0.1 0.038 13.5 0.0 2.0 2 0 0 2 2 1 0 AsnC-type helix-turn-helix domain HTH_34 PF13601.1 gi|57641818|ref|YP_184296.1| - 0.013 15.5 0.0 0.024 14.6 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_DeoR PF08220.7 gi|57641818|ref|YP_184296.1| - 0.013 14.9 0.1 0.035 13.6 0.1 1.7 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain PadR PF03551.9 gi|57641818|ref|YP_184296.1| - 0.024 14.4 0.1 0.061 13.1 0.1 1.7 1 1 0 1 1 1 0 Transcriptional regulator PadR-like family DUF1456 PF07308.8 gi|57641818|ref|YP_184296.1| - 0.04 13.9 0.5 2.7 8.1 0.3 3.0 2 2 0 2 2 2 0 Protein of unknown function (DUF1456) GPP34 PF05719.6 gi|57641818|ref|YP_184296.1| - 0.11 12.5 0.1 1.4 8.9 0.0 2.0 2 0 0 2 2 2 0 Golgi phosphoprotein 3 (GPP34) HTH_8 PF02954.14 gi|57641818|ref|YP_184296.1| - 0.14 11.7 0.5 17 5.0 0.0 2.7 3 0 0 3 3 2 0 Bacterial regulatory protein, Fis family Alpha-amylase PF00128.19 gi|57641819|ref|YP_184297.1| - 6.4e-23 81.6 4.9 1.1e-22 80.9 3.4 1.3 1 0 0 1 1 1 1 Alpha amylase, catalytic domain DUF1939 PF09154.5 gi|57641819|ref|YP_184297.1| - 4.7e-21 74.4 1.8 1.5e-20 72.8 1.2 1.9 1 0 0 1 1 1 1 Domain of unknown function (DUF1939) Glyco_hydro_70 PF02324.11 gi|57641819|ref|YP_184297.1| - 0.0069 14.2 0.0 0.0099 13.6 0.0 1.1 1 0 0 1 1 1 1 Glycosyl hydrolase family 70 Carb_kinase PF01256.12 gi|57641821|ref|YP_184299.1| - 3.1e-51 173.9 0.0 4e-51 173.6 0.0 1.1 1 0 0 1 1 1 1 Carbohydrate kinase YjeF_N PF03853.10 gi|57641821|ref|YP_184299.1| - 1.3e-38 132.2 0.0 3e-38 131.0 0.0 1.6 2 0 0 2 2 2 1 YjeF-related protein N-terminus HK PF02110.10 gi|57641821|ref|YP_184299.1| - 2.5e-05 23.5 0.2 5.9e-05 22.3 0.1 1.5 1 1 0 1 1 1 1 Hydroxyethylthiazole kinase family Phos_pyr_kin PF08543.7 gi|57641821|ref|YP_184299.1| - 0.0023 17.1 0.0 0.0046 16.1 0.0 1.5 1 1 0 1 1 1 1 Phosphomethylpyrimidine kinase DUF4281 PF14108.1 gi|57641822|ref|YP_184300.1| - 0.016 15.3 2.1 0.022 14.8 1.5 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4281) LrgB PF04172.11 gi|57641822|ref|YP_184300.1| - 0.02 14.0 0.9 0.048 12.7 0.6 1.8 1 1 0 1 1 1 0 LrgB-like family Romo1 PF10247.4 gi|57641822|ref|YP_184300.1| - 0.038 14.1 0.7 0.038 14.1 0.5 2.1 1 1 1 2 2 2 0 Reactive mitochondrial oxygen species modulator 1 7TMR-DISM_7TM PF07695.6 gi|57641822|ref|YP_184300.1| - 0.1 12.2 7.6 0.17 11.5 5.3 1.4 1 1 0 1 1 1 0 7TM diverse intracellular signalling DUF2938 PF11158.3 gi|57641822|ref|YP_184300.1| - 0.11 11.7 3.0 0.13 11.5 2.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2938) DUF1129 PF06570.6 gi|57641822|ref|YP_184300.1| - 0.35 10.1 2.1 0.58 9.4 1.4 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1129) DUF3353 PF11833.3 gi|57641822|ref|YP_184300.1| - 7.9 5.8 6.9 8.8 5.7 4.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3353) Macro PF01661.16 gi|57641825|ref|YP_184303.1| - 3.1e-34 117.4 0.1 4.1e-34 117.0 0.0 1.2 1 0 0 1 1 1 1 Macro domain AP_endonuc_2 PF01261.19 gi|57641825|ref|YP_184303.1| - 0.0061 15.8 0.0 0.0077 15.5 0.0 1.3 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel GRDB PF07355.7 gi|57641825|ref|YP_184303.1| - 0.025 13.5 0.0 0.032 13.1 0.0 1.1 1 0 0 1 1 1 0 Glycine/sarcosine/betaine reductase selenoprotein B (GRDB) Amidohydro_1 PF01979.15 gi|57641826|ref|YP_184304.1| - 1.3e-57 195.9 0.7 1.5e-57 195.7 0.5 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_4 PF13147.1 gi|57641826|ref|YP_184304.1| - 1.5e-16 61.2 0.1 9.2e-15 55.4 0.1 2.3 1 1 0 1 1 1 1 Amidohydrolase Amidohydro_5 PF13594.1 gi|57641826|ref|YP_184304.1| - 1.8e-14 53.2 0.1 1.7e-13 50.1 0.0 2.7 2 0 0 2 2 2 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|57641826|ref|YP_184304.1| - 2.1e-11 43.7 3.2 1.1e-09 38.0 0.1 2.7 2 1 1 3 3 3 2 Amidohydrolase family A_deaminase PF00962.17 gi|57641826|ref|YP_184304.1| - 7e-05 21.9 0.0 0.00015 20.7 0.0 1.5 1 1 0 1 1 1 1 Adenosine/AMP deaminase TatD_DNase PF01026.16 gi|57641826|ref|YP_184304.1| - 0.043 13.0 0.1 0.095 11.8 0.0 1.6 1 1 0 1 1 1 0 TatD related DNase DUF553 PF04473.7 gi|57641827|ref|YP_184305.1| - 7.7e-52 174.6 0.0 1.6e-51 173.6 0.0 1.5 1 0 0 1 1 1 1 Transglutaminase-like domain Transglut_core PF01841.14 gi|57641827|ref|YP_184305.1| - 0.0048 17.0 0.0 0.062 13.5 0.0 2.4 1 1 0 1 1 1 1 Transglutaminase-like superfamily Tox-HNH-HHH PF15637.1 gi|57641827|ref|YP_184305.1| - 0.024 14.4 0.0 0.069 12.9 0.0 1.8 1 0 0 1 1 1 0 HNH/Endo VII superfamily nuclease toxin with a HHH motif OrfB_Zn_ribbon PF07282.6 gi|57641827|ref|YP_184305.1| - 0.06 13.0 2.1 2.6 7.7 2.2 2.4 2 0 0 2 2 2 0 Putative transposase DNA-binding domain zf-H2C2_2 PF13465.1 gi|57641827|ref|YP_184305.1| - 0.075 13.3 0.4 0.32 11.3 0.3 2.1 1 0 0 1 1 1 0 Zinc-finger double domain zf-AN1 PF01428.11 gi|57641827|ref|YP_184305.1| - 0.078 12.8 3.6 0.15 11.9 2.5 1.4 1 0 0 1 1 1 0 AN1-like Zinc finger IBR PF01485.16 gi|57641827|ref|YP_184305.1| - 0.098 12.5 2.2 0.21 11.5 1.5 1.4 1 0 0 1 1 1 0 IBR domain MOFRL PF05161.8 gi|57641828|ref|YP_184306.1| - 2.6e-39 133.6 0.5 4.6e-39 132.8 0.3 1.4 1 0 0 1 1 1 1 MOFRL family PNP_UDP_1 PF01048.15 gi|57641830|ref|YP_184308.1| - 4.7e-48 163.1 0.0 5.3e-48 163.0 0.0 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily PAC2 PF09754.4 gi|57641831|ref|YP_184309.1| - 4.2e-45 154.2 0.0 5.1e-45 154.0 0.0 1.0 1 0 0 1 1 1 1 PAC2 family DUF607 PF04678.8 gi|57641831|ref|YP_184309.1| - 0.083 12.8 0.1 0.13 12.2 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF607 FliD_C PF07195.7 gi|57641831|ref|YP_184309.1| - 0.14 11.4 0.9 0.35 10.1 0.6 1.5 1 1 0 1 1 1 0 Flagellar hook-associated protein 2 C-terminus DUF473 PF04322.7 gi|57641832|ref|YP_184310.1| - 2.1e-35 120.9 0.3 2.5e-35 120.6 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF473) DUF91 PF01939.11 gi|57641833|ref|YP_184311.1| - 8.4e-99 329.3 0.2 9.5e-99 329.1 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF91 Cas_Cas4 PF01930.12 gi|57641833|ref|YP_184311.1| - 0.0028 17.6 0.0 0.011 15.6 0.0 1.9 2 0 0 2 2 2 1 Domain of unknown function DUF83 PDDEXK_1 PF12705.2 gi|57641833|ref|YP_184311.1| - 0.055 12.8 0.0 0.064 12.6 0.0 1.2 1 0 0 1 1 1 0 PD-(D/E)XK nuclease superfamily Rad51 PF08423.6 gi|57641834|ref|YP_184312.1| - 6e-93 310.4 1.2 3.6e-76 255.4 0.0 2.5 3 0 0 3 3 3 2 Rad51 LAGLIDADG_3 PF14528.1 gi|57641834|ref|YP_184312.1| - 1.2e-13 51.0 0.6 4.6e-12 45.9 0.1 3.0 3 0 0 3 3 3 1 LAGLIDADG-like domain HHH_5 PF14520.1 gi|57641834|ref|YP_184312.1| - 5.1e-12 45.7 8.8 4.6e-11 42.7 2.2 4.3 4 0 0 4 4 4 1 Helix-hairpin-helix domain RecA PF00154.16 gi|57641834|ref|YP_184312.1| - 3.8e-08 32.7 0.1 0.0069 15.4 0.1 2.2 2 0 0 2 2 2 2 recA bacterial DNA recombination protein AAA_25 PF13481.1 gi|57641834|ref|YP_184312.1| - 5.7e-07 29.1 0.7 0.00018 20.9 0.1 2.7 3 0 0 3 3 3 2 AAA domain Hom_end PF05204.9 gi|57641834|ref|YP_184312.1| - 1.2e-05 25.1 0.1 0.00071 19.5 0.0 2.5 2 0 0 2 2 2 1 Homing endonuclease HHH PF00633.18 gi|57641834|ref|YP_184312.1| - 2.6e-05 23.6 7.7 0.00017 21.0 0.1 3.8 3 0 0 3 3 3 1 Helix-hairpin-helix motif Cdd1 PF11731.3 gi|57641834|ref|YP_184312.1| - 3.9e-05 23.4 0.0 0.00011 22.0 0.0 1.7 1 0 0 1 1 1 1 Pathogenicity locus KaiC PF06745.8 gi|57641834|ref|YP_184312.1| - 0.00015 21.0 0.1 0.014 14.5 0.0 2.4 2 0 0 2 2 2 1 KaiC CPSase_L_D3 PF02787.14 gi|57641834|ref|YP_184312.1| - 0.00057 19.6 0.0 0.0016 18.1 0.0 1.7 1 0 0 1 1 1 1 Carbamoyl-phosphate synthetase large chain, oligomerisation domain HHH_2 PF12826.2 gi|57641834|ref|YP_184312.1| - 0.00059 19.6 1.4 0.0016 18.2 0.1 2.5 2 0 0 2 2 2 1 Helix-hairpin-helix motif IMS_HHH PF11798.3 gi|57641834|ref|YP_184312.1| - 0.004 17.1 0.0 0.04 13.9 0.0 2.7 2 0 0 2 2 2 1 IMS family HHH motif DNA_pol_lambd_f PF10391.4 gi|57641834|ref|YP_184312.1| - 0.0099 15.4 0.0 0.027 14.0 0.0 1.8 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda Intein_splicing PF14890.1 gi|57641834|ref|YP_184312.1| - 0.011 14.6 0.3 0.18 10.6 0.1 2.4 2 0 0 2 2 2 0 Intein splicing domain HHH_8 PF14716.1 gi|57641834|ref|YP_184312.1| - 0.015 15.4 0.8 0.44 10.7 0.0 3.1 2 0 0 2 2 2 0 Helix-hairpin-helix domain DUF4332 PF14229.1 gi|57641834|ref|YP_184312.1| - 0.03 14.3 0.3 0.31 11.0 0.0 2.6 3 0 0 3 3 3 0 Domain of unknown function (DUF4332) Ion_trans_2 PF07885.11 gi|57641835|ref|YP_184313.1| - 6.3e-19 67.4 10.4 1.2e-18 66.5 7.2 1.4 1 0 0 1 1 1 1 Ion channel TrkA_N PF02254.13 gi|57641835|ref|YP_184313.1| - 3e-17 62.6 0.7 7.5e-17 61.3 0.1 2.0 2 0 0 2 2 2 1 TrkA-N domain Ion_trans PF00520.26 gi|57641835|ref|YP_184313.1| - 0.00051 19.3 1.8 0.00076 18.7 0.9 1.4 1 1 0 1 1 1 1 Ion transport protein ADH_zinc_N PF00107.21 gi|57641835|ref|YP_184313.1| - 0.021 14.3 0.0 0.063 12.8 0.0 1.9 1 0 0 1 1 1 0 Zinc-binding dehydrogenase DUF2721 PF11026.3 gi|57641835|ref|YP_184313.1| - 0.16 11.6 6.8 0.032 13.8 1.8 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF2721) FA_desaturase PF00487.19 gi|57641835|ref|YP_184313.1| - 3.2 7.1 6.9 0.62 9.4 1.8 1.7 2 0 0 2 2 2 0 Fatty acid desaturase Cdc6_C PF09079.6 gi|57641836|ref|YP_184314.1| - 3.6e-30 103.5 0.2 6e-29 99.6 0.0 2.6 2 0 0 2 2 2 1 CDC6, C terminal AAA_22 PF13401.1 gi|57641836|ref|YP_184314.1| - 9.3e-11 41.9 0.0 4.5e-10 39.7 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA PF00004.24 gi|57641836|ref|YP_184314.1| - 3.1e-10 40.3 0.2 9.7e-10 38.7 0.0 1.9 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|57641836|ref|YP_184314.1| - 2.9e-08 33.9 0.0 5.2e-07 29.8 0.0 2.6 2 1 0 2 2 2 1 AAA ATPase domain Arch_ATPase PF01637.13 gi|57641836|ref|YP_184314.1| - 4.4e-08 33.1 1.4 8.5e-08 32.1 1.0 1.5 1 0 0 1 1 1 1 Archaeal ATPase NB-ARC PF00931.17 gi|57641836|ref|YP_184314.1| - 4.9e-06 25.6 1.0 6.2e-06 25.2 0.1 1.6 2 0 0 2 2 2 1 NB-ARC domain DUF815 PF05673.8 gi|57641836|ref|YP_184314.1| - 0.00033 19.6 0.2 0.0011 17.8 0.0 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF815) DUF2075 PF09848.4 gi|57641836|ref|YP_184314.1| - 0.00075 18.5 0.0 0.0014 17.7 0.0 1.4 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) KAP_NTPase PF07693.9 gi|57641836|ref|YP_184314.1| - 0.0013 17.7 1.2 0.42 9.5 0.0 2.5 1 1 0 2 2 2 2 KAP family P-loop domain DEAD PF00270.24 gi|57641836|ref|YP_184314.1| - 0.0016 17.9 1.2 0.8 9.1 0.0 2.5 1 1 1 2 2 2 2 DEAD/DEAH box helicase AAA_32 PF13654.1 gi|57641836|ref|YP_184314.1| - 0.0025 16.5 1.4 0.043 12.4 0.0 2.1 2 0 0 2 2 2 1 AAA domain T2SE PF00437.15 gi|57641836|ref|YP_184314.1| - 0.0039 16.1 0.0 0.0086 15.0 0.0 1.5 1 0 0 1 1 1 1 Type II/IV secretion system protein Thioredoxin_8 PF13905.1 gi|57641836|ref|YP_184314.1| - 0.0052 16.8 0.4 1.7 8.8 0.1 2.7 1 1 0 2 2 2 1 Thioredoxin-like AAA_10 PF12846.2 gi|57641836|ref|YP_184314.1| - 0.006 16.0 0.0 0.44 9.9 0.0 2.4 2 0 0 2 2 2 1 AAA-like domain Kinesin PF00225.18 gi|57641836|ref|YP_184314.1| - 0.0069 15.1 0.0 0.012 14.3 0.0 1.3 1 0 0 1 1 1 1 Kinesin motor domain Sigma54_activat PF00158.21 gi|57641836|ref|YP_184314.1| - 0.0078 15.7 0.1 0.036 13.5 0.0 2.1 2 0 0 2 2 2 1 Sigma-54 interaction domain NACHT PF05729.7 gi|57641836|ref|YP_184314.1| - 0.011 15.4 0.0 0.025 14.2 0.0 1.7 1 0 0 1 1 1 0 NACHT domain AAA_2 PF07724.9 gi|57641836|ref|YP_184314.1| - 0.015 15.1 0.1 0.086 12.7 0.0 2.2 2 1 0 2 2 1 0 AAA domain (Cdc48 subfamily) AAA_17 PF13207.1 gi|57641836|ref|YP_184314.1| - 0.017 15.9 0.5 0.048 14.4 0.2 1.9 1 1 0 1 1 1 0 AAA domain AAA_24 PF13479.1 gi|57641836|ref|YP_184314.1| - 0.031 13.8 3.8 0.27 10.7 2.7 2.2 1 1 0 1 1 1 0 AAA domain dTMP_synthase PF02593.9 gi|57641836|ref|YP_184314.1| - 0.032 13.5 1.1 0.39 10.0 0.3 2.1 1 1 1 2 2 2 0 Thymidylate synthase DUF87 PF01935.12 gi|57641836|ref|YP_184314.1| - 0.054 13.3 1.8 0.13 12.0 0.3 2.3 1 1 1 2 2 2 0 Domain of unknown function DUF87 DUF853 PF05872.7 gi|57641836|ref|YP_184314.1| - 0.055 11.8 0.1 0.14 10.4 0.0 1.6 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF853) PIF1 PF05970.9 gi|57641836|ref|YP_184314.1| - 0.06 12.2 0.0 0.1 11.4 0.0 1.3 1 0 0 1 1 1 0 PIF1-like helicase AAA_14 PF13173.1 gi|57641836|ref|YP_184314.1| - 0.083 12.7 2.5 0.14 12.1 0.8 2.1 2 1 0 2 2 1 0 AAA domain AAA_18 PF13238.1 gi|57641836|ref|YP_184314.1| - 0.23 11.7 2.3 0.69 10.2 0.7 2.5 2 1 0 2 2 2 0 AAA domain KaiC PF06745.8 gi|57641836|ref|YP_184314.1| - 1.1 8.3 4.5 8.2 5.4 2.5 2.6 2 1 0 2 2 2 0 KaiC DNA_pol_E_B PF04042.11 gi|57641837|ref|YP_184315.1| - 2.3e-14 53.1 0.0 3.5e-14 52.5 0.0 1.3 1 0 0 1 1 1 1 DNA polymerase alpha/epsilon subunit B Metallophos_2 PF12850.2 gi|57641837|ref|YP_184315.1| - 2e-09 37.4 0.0 3.9e-09 36.5 0.0 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain tRNA_anti-codon PF01336.20 gi|57641837|ref|YP_184315.1| - 8.5e-06 25.5 0.0 2.1e-05 24.2 0.0 1.7 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain Metallophos PF00149.23 gi|57641837|ref|YP_184315.1| - 0.0015 17.9 0.1 0.0038 16.6 0.1 1.7 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase PolC_DP2 PF03833.8 gi|57641838|ref|YP_184316.1| - 0 1396.2 0.7 0 1396.2 0.5 1.8 2 0 0 2 2 2 1 DNA polymerase II large subunit DP2 LAGLIDADG_3 PF14528.1 gi|57641838|ref|YP_184316.1| - 6.6e-15 55.1 2.5 1.3e-10 41.3 0.0 4.0 3 0 0 3 3 3 2 LAGLIDADG-like domain Intein_splicing PF14890.1 gi|57641838|ref|YP_184316.1| - 2.3e-07 30.0 0.0 3.2e-06 26.2 0.0 2.4 1 1 0 1 1 1 1 Intein splicing domain DZR PF12773.2 gi|57641838|ref|YP_184316.1| - 0.0093 15.7 15.6 0.16 11.7 6.0 3.0 2 1 0 2 2 2 2 Double zinc ribbon LAGLIDADG_WhiA PF14527.1 gi|57641838|ref|YP_184316.1| - 0.019 14.8 0.3 4.5 7.2 0.0 2.9 2 0 0 2 2 2 0 WhiA LAGLIDADG-like domain zf-C4_Topoisom PF01396.14 gi|57641838|ref|YP_184316.1| - 0.048 13.1 0.2 0.048 13.1 0.1 4.5 5 0 0 5 5 5 0 Topoisomerase DNA binding C4 zinc finger zinc-ribbons_6 PF07191.7 gi|57641838|ref|YP_184316.1| - 0.061 13.1 10.7 1.2 8.9 0.0 3.2 2 1 1 3 3 3 0 zinc-ribbons SprT-like PF10263.4 gi|57641838|ref|YP_184316.1| - 0.34 10.5 4.5 3.7 7.1 1.0 2.4 2 0 0 2 2 2 0 SprT-like family zf-HIT PF04438.11 gi|57641838|ref|YP_184316.1| - 0.52 9.9 22.5 0.28 10.8 0.7 4.9 5 0 0 5 5 5 0 HIT zinc finger Sar8_2 PF03058.9 gi|57641838|ref|YP_184316.1| - 2.7 8.3 3.8 48 4.3 1.2 2.5 2 0 0 2 2 2 0 Sar8.2 family Zn_Tnp_IS91 PF14319.1 gi|57641838|ref|YP_184316.1| - 3.2 7.3 7.3 2 7.9 2.2 2.5 2 0 0 2 2 2 0 Transposase zinc-binding domain HypA PF01155.14 gi|57641838|ref|YP_184316.1| - 3.3 7.4 13.2 1.3 8.7 0.3 3.3 2 1 0 2 2 2 0 Hydrogenase expression/synthesis hypA family Baculo_ME53 PF06061.6 gi|57641839|ref|YP_184317.1| - 0.00092 18.2 0.0 0.0011 17.9 0.0 1.2 1 0 0 1 1 1 1 Baculoviridae ME53 Prok-RING_1 PF14446.1 gi|57641839|ref|YP_184317.1| - 0.0013 18.4 0.3 0.0019 17.8 0.2 1.2 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 Rubredoxin PF00301.15 gi|57641839|ref|YP_184317.1| - 0.019 14.8 0.5 4.3 7.2 0.0 2.6 2 0 0 2 2 2 0 Rubredoxin zf-C2H2_3 PF13878.1 gi|57641839|ref|YP_184317.1| - 0.041 13.4 0.0 0.08 12.5 0.0 1.5 1 0 0 1 1 1 0 zinc-finger of acetyl-transferase ESCO DZR PF12773.2 gi|57641839|ref|YP_184317.1| - 0.043 13.6 0.4 0.066 13.0 0.3 1.2 1 0 0 1 1 1 0 Double zinc ribbon OrfB_Zn_ribbon PF07282.6 gi|57641839|ref|YP_184317.1| - 0.051 13.2 0.7 0.092 12.4 0.5 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Rad50_zn_hook PF04423.9 gi|57641839|ref|YP_184317.1| - 0.062 12.7 0.4 0.14 11.6 0.3 1.6 1 0 0 1 1 1 0 Rad50 zinc hook motif Ribosomal_L37ae PF01780.14 gi|57641839|ref|YP_184317.1| - 0.065 13.0 0.1 0.11 12.3 0.1 1.3 1 0 0 1 1 1 0 Ribosomal L37ae protein family zinc-ribbons_6 PF07191.7 gi|57641839|ref|YP_184317.1| - 0.13 12.0 0.3 0.19 11.5 0.2 1.2 1 0 0 1 1 1 0 zinc-ribbons C1_1 PF00130.17 gi|57641839|ref|YP_184317.1| - 0.16 11.7 0.6 0.27 11.0 0.4 1.2 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-H2C2_2 PF13465.1 gi|57641839|ref|YP_184317.1| - 1.5 9.2 3.9 7.5 7.0 0.2 2.4 2 0 0 2 2 2 0 Zinc-finger double domain DUF91 PF01939.11 gi|57641840|ref|YP_184318.1| - 0.00015 21.0 0.0 0.00022 20.4 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF91 DUF1703 PF08011.6 gi|57641840|ref|YP_184318.1| - 0.0011 18.6 0.1 0.0021 17.7 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1703) TYW3 PF02676.9 gi|57641842|ref|YP_184320.1| - 2.1e-54 183.7 0.0 2.4e-54 183.6 0.0 1.0 1 0 0 1 1 1 1 Methyltransferase TYW3 BPL_LplA_LipB PF03099.14 gi|57641843|ref|YP_184321.1| - 1.6e-23 83.0 0.0 2.5e-23 82.4 0.0 1.2 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family Glycos_transf_2 PF00535.21 gi|57641844|ref|YP_184322.1| - 5.3e-38 130.3 0.0 8.3e-38 129.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 GtrA PF04138.9 gi|57641844|ref|YP_184322.1| - 3.3e-27 94.7 12.0 5e-27 94.1 8.3 1.3 1 0 0 1 1 1 1 GtrA-like protein Glyco_tranf_2_3 PF13641.1 gi|57641844|ref|YP_184322.1| - 1e-14 54.9 0.0 1.5e-14 54.3 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|57641844|ref|YP_184322.1| - 8.4e-09 34.9 0.0 1.1e-08 34.5 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 dTMP_synthase PF02593.9 gi|57641844|ref|YP_184322.1| - 0.016 14.5 0.0 0.026 13.8 0.0 1.4 1 1 0 1 1 1 0 Thymidylate synthase Glyco_transf_21 PF13506.1 gi|57641844|ref|YP_184322.1| - 0.051 12.8 0.0 0.1 11.8 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferase family 21 KaiC PF06745.8 gi|57641845|ref|YP_184323.1| - 1.6e-48 164.8 0.0 1.8e-48 164.6 0.0 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|57641845|ref|YP_184323.1| - 3.2e-10 39.7 0.0 6.4e-10 38.7 0.0 1.5 1 1 0 1 1 1 1 AAA domain RecA PF00154.16 gi|57641845|ref|YP_184323.1| - 1.9e-06 27.2 0.0 2.4e-06 26.8 0.0 1.2 1 0 0 1 1 1 1 recA bacterial DNA recombination protein GvpD PF07088.6 gi|57641845|ref|YP_184323.1| - 2.7e-06 26.0 0.6 5.4e-06 25.0 0.4 1.4 1 1 0 1 1 1 1 GvpD gas vesicle protein AAA_22 PF13401.1 gi|57641845|ref|YP_184323.1| - 1.3e-05 25.3 0.0 2.5e-05 24.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|57641845|ref|YP_184323.1| - 2.6e-05 25.0 0.1 6.4e-05 23.7 0.0 1.5 1 1 0 1 1 1 1 AAA domain DnaB_C PF03796.10 gi|57641845|ref|YP_184323.1| - 2.8e-05 23.1 0.1 0.00099 18.0 0.0 2.2 2 0 0 2 2 2 1 DnaB-like helicase C terminal domain AAA_14 PF13173.1 gi|57641845|ref|YP_184323.1| - 3.1e-05 23.8 0.1 0.00011 22.1 0.1 1.9 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|57641845|ref|YP_184323.1| - 4e-05 23.9 0.2 8.3e-05 22.8 0.1 1.5 1 1 0 1 1 1 1 AAA domain Arch_ATPase PF01637.13 gi|57641845|ref|YP_184323.1| - 6.1e-05 22.8 0.1 8.9e-05 22.2 0.1 1.3 1 0 0 1 1 1 1 Archaeal ATPase AAA_19 PF13245.1 gi|57641845|ref|YP_184323.1| - 0.00013 21.6 0.2 0.00028 20.5 0.1 1.5 1 0 0 1 1 1 1 Part of AAA domain AAA_16 PF13191.1 gi|57641845|ref|YP_184323.1| - 0.00097 19.1 0.0 0.0015 18.5 0.0 1.3 1 1 0 1 1 1 1 AAA ATPase domain DUF2075 PF09848.4 gi|57641845|ref|YP_184323.1| - 0.0013 17.8 0.1 0.0021 17.0 0.0 1.3 1 1 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) cobW PF02492.14 gi|57641845|ref|YP_184323.1| - 0.0055 16.1 0.0 0.0097 15.3 0.0 1.4 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain NACHT PF05729.7 gi|57641845|ref|YP_184323.1| - 0.0083 15.8 0.0 0.029 14.0 0.0 1.8 2 1 1 3 3 3 1 NACHT domain AAA_24 PF13479.1 gi|57641845|ref|YP_184323.1| - 0.012 15.1 0.5 0.071 12.6 0.3 2.1 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|57641845|ref|YP_184323.1| - 0.015 15.2 0.1 0.058 13.3 0.0 1.9 1 1 0 2 2 2 0 AAA domain AAA_33 PF13671.1 gi|57641845|ref|YP_184323.1| - 0.016 15.0 0.1 0.027 14.3 0.1 1.6 1 1 0 1 1 1 0 AAA domain PAXNEB PF05625.6 gi|57641845|ref|YP_184323.1| - 0.027 13.3 0.3 0.27 10.0 0.0 2.3 2 1 0 2 2 2 0 PAXNEB protein NTPase_1 PF03266.10 gi|57641845|ref|YP_184323.1| - 0.035 13.8 0.0 0.072 12.7 0.0 1.5 1 0 0 1 1 1 0 NTPase IstB_IS21 PF01695.12 gi|57641845|ref|YP_184323.1| - 0.048 13.0 0.0 0.082 12.3 0.0 1.5 1 1 0 1 1 1 0 IstB-like ATP binding protein AAA_11 PF13086.1 gi|57641845|ref|YP_184323.1| - 0.059 12.9 0.0 0.076 12.5 0.0 1.3 1 1 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|57641845|ref|YP_184323.1| - 0.06 13.6 0.0 0.12 12.7 0.0 1.5 1 0 0 1 1 1 0 ABC transporter AAA_29 PF13555.1 gi|57641845|ref|YP_184323.1| - 0.063 12.8 0.0 0.12 11.8 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain T2SE PF00437.15 gi|57641845|ref|YP_184323.1| - 0.08 11.8 0.0 0.13 11.1 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein MMR_HSR1 PF01926.18 gi|57641845|ref|YP_184323.1| - 0.092 12.7 0.0 0.17 11.8 0.0 1.6 1 1 0 1 1 1 0 50S ribosome-binding GTPase Zot PF05707.7 gi|57641845|ref|YP_184323.1| - 0.12 11.8 0.0 0.19 11.2 0.0 1.3 1 0 0 1 1 1 0 Zonular occludens toxin (Zot) AAA PF00004.24 gi|57641845|ref|YP_184323.1| - 0.12 12.5 0.6 0.23 11.6 0.4 1.6 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.1 gi|57641845|ref|YP_184323.1| - 0.13 11.8 0.0 0.22 11.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.7 gi|57641845|ref|YP_184323.1| - 0.15 11.1 0.1 0.28 10.2 0.1 1.4 1 0 0 1 1 1 0 Zeta toxin Rho_N PF07498.7 gi|57641846|ref|YP_184324.1| - 0.084 12.6 0.5 0.26 11.1 0.3 1.9 1 1 1 2 2 2 0 Rho termination factor, N-terminal domain Peptidase_M28 PF04389.12 gi|57641847|ref|YP_184325.1| - 5.1e-17 62.1 0.0 9.6e-17 61.2 0.0 1.5 1 0 0 1 1 1 1 Peptidase family M28 DUF2172 PF09940.4 gi|57641847|ref|YP_184325.1| - 8.1e-11 40.9 0.0 3e-10 39.0 0.0 1.7 2 0 0 2 2 2 1 Domain of unknown function (DUF2172) PA PF02225.17 gi|57641847|ref|YP_184325.1| - 0.00018 21.1 0.0 0.00034 20.2 0.0 1.5 1 0 0 1 1 1 1 PA domain TrmB PF01978.14 gi|57641848|ref|YP_184326.1| - 7.3e-15 54.4 0.8 1.1e-14 53.8 0.5 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB FaeA PF04703.7 gi|57641848|ref|YP_184326.1| - 4e-05 23.6 1.6 0.00014 21.9 0.1 2.2 2 1 0 2 2 2 1 FaeA-like protein HTH_5 PF01022.15 gi|57641848|ref|YP_184326.1| - 5.1e-05 22.8 0.2 9.1e-05 22.0 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.5 gi|57641848|ref|YP_184326.1| - 0.00018 21.0 0.1 0.00036 20.0 0.1 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|57641848|ref|YP_184326.1| - 0.0002 20.6 0.3 0.0002 20.6 0.2 1.8 2 0 0 2 2 1 1 Winged helix-turn-helix DNA-binding HTH_23 PF13384.1 gi|57641848|ref|YP_184326.1| - 0.00022 20.7 0.5 0.00089 18.8 0.1 2.2 1 1 1 2 2 2 1 Homeodomain-like domain HTH_11 PF08279.7 gi|57641848|ref|YP_184326.1| - 0.00035 20.1 1.3 0.00049 19.6 0.4 1.7 2 0 0 2 2 2 1 HTH domain GerE PF00196.14 gi|57641848|ref|YP_184326.1| - 0.0021 17.3 0.4 0.0049 16.1 0.0 1.8 2 0 0 2 2 2 1 Bacterial regulatory proteins, luxR family HTH_DeoR PF08220.7 gi|57641848|ref|YP_184326.1| - 0.0023 17.4 0.3 0.0054 16.2 0.2 1.7 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_20 PF12840.2 gi|57641848|ref|YP_184326.1| - 0.0029 17.3 0.5 0.0057 16.4 0.3 1.5 1 1 0 1 1 1 1 Helix-turn-helix domain PaaX PF07848.7 gi|57641848|ref|YP_184326.1| - 0.0032 17.4 0.3 0.032 14.2 0.0 2.2 2 0 0 2 2 2 1 PaaX-like protein HTH_Mga PF08280.6 gi|57641848|ref|YP_184326.1| - 0.0049 16.5 0.3 0.013 15.2 0.1 1.8 2 1 0 2 2 2 1 M protein trans-acting positive regulator (MGA) HTH domain HTH_28 PF13518.1 gi|57641848|ref|YP_184326.1| - 0.0058 16.6 0.2 0.015 15.2 0.1 1.8 1 1 0 1 1 1 1 Helix-turn-helix domain LexA_DNA_bind PF01726.11 gi|57641848|ref|YP_184326.1| - 0.0061 16.1 0.1 0.0061 16.1 0.1 1.8 3 0 0 3 3 1 1 LexA DNA binding domain HTH_40 PF14493.1 gi|57641848|ref|YP_184326.1| - 0.0066 16.6 0.2 0.013 15.7 0.1 1.6 1 1 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.17 gi|57641848|ref|YP_184326.1| - 0.012 15.3 0.2 0.025 14.2 0.1 1.7 1 0 0 1 1 1 0 MarR family Penicillinase_R PF03965.11 gi|57641848|ref|YP_184326.1| - 0.015 15.3 0.4 0.022 14.8 0.3 1.2 1 0 0 1 1 1 0 Penicillinase repressor Phage_terminase PF10668.4 gi|57641848|ref|YP_184326.1| - 0.032 14.0 0.0 0.055 13.2 0.0 1.4 1 0 0 1 1 1 0 Phage terminase small subunit MarR_2 PF12802.2 gi|57641848|ref|YP_184326.1| - 0.032 13.8 0.1 0.052 13.2 0.1 1.4 1 0 0 1 1 1 0 MarR family HTH_12 PF08461.5 gi|57641848|ref|YP_184326.1| - 0.035 13.8 1.7 0.035 13.8 1.1 1.9 2 1 0 2 2 2 0 Ribonuclease R winged-helix domain TFIIE_alpha PF02002.12 gi|57641848|ref|YP_184326.1| - 0.04 13.4 2.7 0.14 11.7 0.6 2.0 1 1 1 2 2 2 0 TFIIE alpha subunit Fe_dep_repress PF01325.14 gi|57641848|ref|YP_184326.1| - 0.046 13.6 0.1 0.1 12.5 0.0 1.6 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain GntR PF00392.16 gi|57641848|ref|YP_184326.1| - 0.048 13.0 6.2 0.091 12.2 0.9 2.9 2 1 0 2 2 2 0 Bacterial regulatory proteins, gntR family HTH_10 PF04967.7 gi|57641848|ref|YP_184326.1| - 0.049 13.2 0.2 0.42 10.2 0.0 2.4 3 0 0 3 3 3 0 HTH DNA binding domain HTH_29 PF13551.1 gi|57641848|ref|YP_184326.1| - 0.062 13.4 0.1 0.085 13.0 0.1 1.4 1 1 0 1 1 1 0 Winged helix-turn helix Cullin PF00888.17 gi|57641848|ref|YP_184326.1| - 0.067 11.7 0.1 0.076 11.5 0.0 1.2 1 0 0 1 1 1 0 Cullin family Mga PF05043.8 gi|57641848|ref|YP_184326.1| - 0.17 12.1 0.9 0.78 10.0 0.0 2.0 2 0 0 2 2 2 0 Mga helix-turn-helix domain Tcell_CD4_Cterm PF12104.3 gi|57641848|ref|YP_184326.1| - 1.8 8.2 5.8 4.6 6.9 1.0 2.4 2 0 0 2 2 2 0 T cell CD4 receptor C terminal region Metallophos_2 PF12850.2 gi|57641849|ref|YP_184327.1| - 2e-07 30.9 0.0 7.7e-07 29.0 0.0 1.8 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|57641849|ref|YP_184327.1| - 0.0005 19.5 0.0 0.00095 18.6 0.0 1.6 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Ribosomal_L41 PF05162.8 gi|57641850|ref|YP_184328.1| - 2.8e-05 23.6 18.8 2.8e-05 23.6 13.0 2.6 1 1 1 2 2 2 1 Ribosomal protein L41 DUF3304 PF11745.3 gi|57641850|ref|YP_184328.1| - 1.3 9.2 3.6 1.3 9.2 2.5 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3304) CN_hydrolase PF00795.17 gi|57641851|ref|YP_184329.1| - 8.5e-40 136.0 0.0 1.1e-39 135.7 0.0 1.1 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase Methyltransf_25 PF13649.1 gi|57641852|ref|YP_184330.1| - 2e-13 50.5 0.0 3.2e-13 49.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|57641852|ref|YP_184330.1| - 1.5e-11 44.8 0.1 2.3e-11 44.2 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|57641852|ref|YP_184330.1| - 1.7e-09 37.7 0.3 4.1e-09 36.4 0.2 1.6 1 1 1 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|57641852|ref|YP_184330.1| - 6.2e-07 29.1 0.0 8.4e-07 28.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|57641852|ref|YP_184330.1| - 8.3e-07 28.8 0.0 1.2e-06 28.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|57641852|ref|YP_184330.1| - 7.4e-06 25.4 0.1 1.3e-05 24.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_11 PF08241.7 gi|57641852|ref|YP_184330.1| - 0.00013 22.3 0.0 0.00023 21.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|57641852|ref|YP_184330.1| - 0.00048 19.3 0.0 0.00065 18.8 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Met_10 PF02475.11 gi|57641852|ref|YP_184330.1| - 0.012 15.2 0.0 0.023 14.3 0.0 1.4 1 1 0 1 1 1 0 Met-10+ like-protein Cons_hypoth95 PF03602.10 gi|57641852|ref|YP_184330.1| - 0.013 14.9 0.0 0.017 14.4 0.0 1.2 1 0 0 1 1 1 0 Conserved hypothetical protein 95 RrnaAD PF00398.15 gi|57641852|ref|YP_184330.1| - 0.04 12.9 0.0 0.053 12.5 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Methyltransf_16 PF10294.4 gi|57641852|ref|YP_184330.1| - 0.045 13.2 0.0 0.074 12.5 0.0 1.3 1 0 0 1 1 1 0 Putative methyltransferase PCMT PF01135.14 gi|57641852|ref|YP_184330.1| - 0.049 13.1 0.0 0.077 12.5 0.0 1.3 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_3 PF01596.12 gi|57641852|ref|YP_184330.1| - 0.062 12.3 0.0 0.098 11.6 0.0 1.2 1 0 0 1 1 1 0 O-methyltransferase FmrO PF07091.6 gi|57641852|ref|YP_184330.1| - 0.091 11.7 0.0 0.13 11.2 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA methyltransferase (FmrO) ADH_zinc_N PF00107.21 gi|57641852|ref|YP_184330.1| - 0.14 11.7 0.2 0.21 11.1 0.1 1.4 1 0 0 1 1 1 0 Zinc-binding dehydrogenase PqiA PF04403.8 gi|57641853|ref|YP_184331.1| - 0.1 12.1 2.5 1.5 8.3 0.4 2.3 1 1 1 2 2 2 0 Paraquat-inducible protein A bPH_5 PF10882.3 gi|57641854|ref|YP_184332.1| - 0.087 12.6 0.0 6.7 6.5 0.0 2.2 2 0 0 2 2 2 0 Bacterial PH domain DUF3325 PF11804.3 gi|57641854|ref|YP_184332.1| - 2.6 8.0 8.0 0.63 10.0 0.7 2.8 2 1 0 2 2 2 0 Protein of unknown function (DUF3325) Sigma70_r4_2 PF08281.7 gi|57641855|ref|YP_184333.1| - 7.5e-05 22.1 0.0 0.00014 21.2 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_10 PF04967.7 gi|57641855|ref|YP_184333.1| - 0.00054 19.4 0.1 0.0016 17.9 0.0 1.7 2 0 0 2 2 2 1 HTH DNA binding domain HTH_7 PF02796.10 gi|57641855|ref|YP_184333.1| - 0.0022 17.8 0.0 0.0032 17.2 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase Sigma70_ECF PF07638.6 gi|57641855|ref|YP_184333.1| - 0.0048 16.5 0.1 0.0063 16.2 0.1 1.1 1 0 0 1 1 1 1 ECF sigma factor MarR_2 PF12802.2 gi|57641855|ref|YP_184333.1| - 0.0052 16.4 0.1 0.011 15.3 0.0 1.6 2 0 0 2 2 2 1 MarR family HTH_23 PF13384.1 gi|57641855|ref|YP_184333.1| - 0.0053 16.3 0.1 0.0094 15.5 0.1 1.3 1 0 0 1 1 1 1 Homeodomain-like domain DUF134 PF02001.11 gi|57641855|ref|YP_184333.1| - 0.0056 16.5 0.1 0.0088 15.9 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF134 HTH_24 PF13412.1 gi|57641855|ref|YP_184333.1| - 0.006 15.9 0.4 0.013 14.8 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.7 gi|57641855|ref|YP_184333.1| - 0.011 15.3 0.0 0.018 14.6 0.0 1.4 1 0 0 1 1 1 0 HTH domain Sigma70_r4 PF04545.11 gi|57641855|ref|YP_184333.1| - 0.012 14.8 0.2 0.02 14.1 0.1 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_3 PF01381.17 gi|57641855|ref|YP_184333.1| - 0.018 14.8 0.0 0.03 14.1 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix TrmB PF01978.14 gi|57641855|ref|YP_184333.1| - 0.024 14.3 0.0 0.051 13.2 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_26 PF13443.1 gi|57641855|ref|YP_184333.1| - 0.03 14.5 0.0 0.045 13.9 0.0 1.2 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain HTH_Crp_2 PF13545.1 gi|57641855|ref|YP_184333.1| - 0.036 13.8 0.0 0.073 12.8 0.0 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain GntR PF00392.16 gi|57641855|ref|YP_184333.1| - 0.093 12.1 0.0 0.19 11.1 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_36 PF13730.1 gi|57641855|ref|YP_184333.1| - 0.12 12.5 0.0 0.23 11.5 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain GerE PF00196.14 gi|57641855|ref|YP_184333.1| - 0.13 11.5 0.0 0.2 11.0 0.0 1.2 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family SdpI PF13630.1 gi|57641857|ref|YP_184335.1| - 0.041 13.5 1.6 0.28 10.9 0.0 2.2 1 1 1 2 2 2 0 SdpI/YhfL protein family DUF1648 PF07853.6 gi|57641858|ref|YP_184336.1| - 3.1e-18 65.0 0.9 3.1e-18 65.0 0.6 2.8 3 0 0 3 3 3 1 Protein of unknown function (DUF1648) SdpI PF13630.1 gi|57641858|ref|YP_184336.1| - 5e-13 48.5 2.8 5e-13 48.5 1.9 3.6 3 1 0 3 3 3 1 SdpI/YhfL protein family Reticulon PF02453.12 gi|57641858|ref|YP_184336.1| - 0.015 14.9 0.5 0.015 14.9 0.4 2.5 3 1 1 4 4 4 0 Reticulon DUF2208 PF09973.4 gi|57641858|ref|YP_184336.1| - 0.53 9.4 2.8 1.6 7.9 1.9 1.9 1 1 0 1 1 1 0 Predicted membrane protein (DUF2208) DUF4064 PF13273.1 gi|57641858|ref|YP_184336.1| - 1.5 8.9 8.8 0.41 10.7 0.1 3.4 2 1 1 3 3 3 0 Protein of unknown function (DUF4064) DUF3099 PF11298.3 gi|57641858|ref|YP_184336.1| - 2.4 7.9 0.0 2.4 7.9 0.0 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF3099) PEN-2 PF10251.4 gi|57641858|ref|YP_184336.1| - 3.2 8.0 7.6 55 4.0 1.5 3.6 2 1 0 3 3 3 0 Presenilin enhancer-2 subunit of gamma secretase PadR PF03551.9 gi|57641859|ref|YP_184337.1| - 1.2e-23 82.6 0.4 1.9e-23 81.9 0.3 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_34 PF13601.1 gi|57641859|ref|YP_184337.1| - 0.00021 21.2 0.0 0.00054 19.9 0.0 1.8 1 1 0 1 1 1 1 Winged helix DNA-binding domain HxlR PF01638.12 gi|57641859|ref|YP_184337.1| - 0.023 14.3 0.1 0.033 13.7 0.0 1.4 1 0 0 1 1 1 0 HxlR-like helix-turn-helix HTH_45 PF14947.1 gi|57641859|ref|YP_184337.1| - 0.097 12.5 0.0 0.2 11.4 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix Mrr_N PF14338.1 gi|57641859|ref|YP_184337.1| - 0.12 12.4 0.1 0.24 11.5 0.1 1.7 1 1 1 2 2 2 0 Mrr N-terminal domain DUF2324 PF10086.4 gi|57641860|ref|YP_184338.1| - 5.6e-36 123.8 18.0 1.2e-35 122.7 12.5 1.5 1 1 0 1 1 1 1 Putative membrane peptidase family (DUF2324) YbjQ_1 PF01906.12 gi|57641861|ref|YP_184339.1| - 4.3e-36 123.5 6.2 4.8e-36 123.3 4.3 1.0 1 0 0 1 1 1 1 Putative heavy-metal-binding DUF830 PF05708.7 gi|57641862|ref|YP_184340.1| - 3.5e-31 108.3 0.0 4.3e-31 108.0 0.0 1.1 1 0 0 1 1 1 1 Orthopoxvirus protein of unknown function (DUF830) Diphthamide_syn PF01866.12 gi|57641863|ref|YP_184341.1| - 3.6e-105 351.5 0.0 4.1e-105 351.4 0.0 1.0 1 0 0 1 1 1 1 Putative diphthamide synthesis protein PrpR_N PF06506.6 gi|57641863|ref|YP_184341.1| - 0.0013 18.1 0.1 0.03 13.7 0.0 2.5 1 1 1 2 2 2 1 Propionate catabolism activator Hydrolase_6 PF13344.1 gi|57641863|ref|YP_184341.1| - 0.015 15.1 0.4 1.7 8.6 0.0 3.1 3 1 0 3 3 3 0 Haloacid dehalogenase-like hydrolase DUF2007 PF09413.5 gi|57641863|ref|YP_184341.1| - 0.016 14.9 0.2 0.6 9.9 0.0 2.6 3 0 0 3 3 3 0 Domain of unknown function (DUF2007) DUF1847 PF08901.6 gi|57641863|ref|YP_184341.1| - 0.062 12.7 0.1 3.3 7.1 0.0 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF1847) HEAT_2 PF13646.1 gi|57641864|ref|YP_184342.1| - 1.7e-08 34.6 6.9 0.009 16.2 0.0 4.9 3 1 1 4 4 4 2 HEAT repeats DUF2435 PF10363.4 gi|57641864|ref|YP_184342.1| - 0.028 14.2 0.5 6.5 6.7 0.1 3.8 3 1 0 3 3 3 0 Protein of unknown function (DUF2435) Arm PF00514.18 gi|57641864|ref|YP_184342.1| - 0.049 13.4 1.7 9.1 6.2 0.0 4.4 4 0 0 4 4 4 0 Armadillo/beta-catenin-like repeat HEAT_EZ PF13513.1 gi|57641864|ref|YP_184342.1| - 0.075 13.5 4.5 3.3 8.3 0.1 4.0 3 1 1 4 4 4 0 HEAT-like repeat HEAT PF02985.17 gi|57641864|ref|YP_184342.1| - 0.2 11.8 3.1 25 5.2 0.0 4.4 5 0 0 5 5 5 0 HEAT repeat DUF3227 PF11537.3 gi|57641865|ref|YP_184343.1| - 0.004 17.2 0.2 0.005 16.9 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3227) DUF2875 PF11394.3 gi|57641865|ref|YP_184343.1| - 0.015 13.8 0.0 0.015 13.8 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2875) DUF3227 PF11537.3 gi|57641866|ref|YP_184344.1| - 3.4e-51 171.6 0.2 3.8e-51 171.4 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3227) KaiC PF06745.8 gi|57641867|ref|YP_184345.1| - 4.9e-83 277.6 0.2 5e-50 169.7 0.0 2.1 2 0 0 2 2 2 2 KaiC AAA_25 PF13481.1 gi|57641867|ref|YP_184345.1| - 3.7e-33 114.5 0.0 1.4e-19 70.2 0.0 2.2 2 0 0 2 2 2 2 AAA domain RecA PF00154.16 gi|57641867|ref|YP_184345.1| - 1.2e-18 67.2 0.1 8.6e-12 44.7 0.0 2.2 2 0 0 2 2 2 2 recA bacterial DNA recombination protein DnaB_C PF03796.10 gi|57641867|ref|YP_184345.1| - 1.3e-12 47.1 0.2 1.9e-05 23.7 0.0 3.0 3 0 0 3 3 3 2 DnaB-like helicase C terminal domain AAA_22 PF13401.1 gi|57641867|ref|YP_184345.1| - 1.7e-12 47.5 0.1 3.5e-07 30.4 0.0 2.4 2 1 0 2 2 2 2 AAA domain IstB_IS21 PF01695.12 gi|57641867|ref|YP_184345.1| - 1.9e-12 46.9 0.2 2.5e-05 23.7 0.0 2.5 3 0 0 3 3 2 2 IstB-like ATP binding protein GvpD PF07088.6 gi|57641867|ref|YP_184345.1| - 6.8e-12 44.4 0.7 6.3e-10 37.9 0.0 2.7 1 1 1 3 3 3 1 GvpD gas vesicle protein Arch_ATPase PF01637.13 gi|57641867|ref|YP_184345.1| - 2.1e-11 43.9 0.8 4.4e-07 29.8 0.1 2.4 2 1 0 2 2 2 2 Archaeal ATPase AAA_19 PF13245.1 gi|57641867|ref|YP_184345.1| - 3.4e-10 39.5 0.1 0.00048 19.8 0.0 2.5 2 0 0 2 2 2 2 Part of AAA domain DUF2075 PF09848.4 gi|57641867|ref|YP_184345.1| - 6.3e-10 38.5 0.2 0.0016 17.4 0.0 2.9 2 1 1 3 3 3 2 Uncharacterized conserved protein (DUF2075) SRP54 PF00448.17 gi|57641867|ref|YP_184345.1| - 8.7e-10 38.3 0.0 1.8e-08 34.0 0.0 2.2 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain NACHT PF05729.7 gi|57641867|ref|YP_184345.1| - 1.9e-09 37.3 0.0 0.0001 22.0 0.0 2.6 2 1 0 2 2 2 2 NACHT domain AAA_16 PF13191.1 gi|57641867|ref|YP_184345.1| - 3.5e-09 36.9 0.1 0.00021 21.3 0.0 2.5 2 0 0 2 2 2 2 AAA ATPase domain AAA_24 PF13479.1 gi|57641867|ref|YP_184345.1| - 5.4e-09 35.9 0.2 3.2e-05 23.6 0.0 3.3 2 1 0 2 2 2 1 AAA domain AAA_14 PF13173.1 gi|57641867|ref|YP_184345.1| - 1.7e-08 34.4 0.5 5.4e-05 23.1 0.1 3.1 2 2 0 2 2 2 2 AAA domain AAA_18 PF13238.1 gi|57641867|ref|YP_184345.1| - 2.7e-08 34.1 0.1 0.00035 20.8 0.0 2.8 3 0 0 3 3 2 2 AAA domain AAA_10 PF12846.2 gi|57641867|ref|YP_184345.1| - 3.9e-08 33.0 0.2 0.0076 15.7 0.0 2.3 2 0 0 2 2 2 2 AAA-like domain AAA_17 PF13207.1 gi|57641867|ref|YP_184345.1| - 8e-08 33.1 0.8 0.0014 19.4 0.0 3.0 2 1 0 2 2 2 2 AAA domain Rad51 PF08423.6 gi|57641867|ref|YP_184345.1| - 9.1e-08 31.3 0.1 0.00027 19.9 0.1 2.6 2 1 0 2 2 2 2 Rad51 ResIII PF04851.10 gi|57641867|ref|YP_184345.1| - 2.1e-07 30.9 0.0 0.00011 22.0 0.0 2.4 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit AAA_31 PF13614.1 gi|57641867|ref|YP_184345.1| - 2.8e-07 30.5 1.9 0.0012 18.8 0.0 4.1 3 1 1 4 4 4 1 AAA domain AAA PF00004.24 gi|57641867|ref|YP_184345.1| - 1.2e-06 28.7 0.5 0.03 14.5 0.1 2.8 2 2 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CbiA PF01656.18 gi|57641867|ref|YP_184345.1| - 1.3e-06 27.9 2.4 1.6e-05 24.3 0.6 2.9 3 1 0 3 3 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain PhoH PF02562.11 gi|57641867|ref|YP_184345.1| - 3e-06 26.6 0.6 0.0033 16.6 0.0 2.8 3 0 0 3 3 3 1 PhoH-like protein ABC_tran PF00005.22 gi|57641867|ref|YP_184345.1| - 3.7e-06 27.2 0.4 0.017 15.4 0.0 2.3 2 0 0 2 2 2 2 ABC transporter TIP49 PF06068.8 gi|57641867|ref|YP_184345.1| - 4.6e-06 25.5 0.6 0.03 13.0 0.1 2.2 2 0 0 2 2 2 2 TIP49 C-terminus T2SE PF00437.15 gi|57641867|ref|YP_184345.1| - 5e-06 25.6 0.1 0.0027 16.6 0.0 2.2 2 0 0 2 2 2 1 Type II/IV secretion system protein DEAD PF00270.24 gi|57641867|ref|YP_184345.1| - 8.8e-06 25.3 0.1 0.0045 16.5 0.1 2.4 2 1 0 2 2 2 1 DEAD/DEAH box helicase ATP-synt_ab PF00006.20 gi|57641867|ref|YP_184345.1| - 1.2e-05 24.9 0.0 0.086 12.3 0.0 2.2 2 0 0 2 2 2 2 ATP synthase alpha/beta family, nucleotide-binding domain NTPase_1 PF03266.10 gi|57641867|ref|YP_184345.1| - 1.6e-05 24.7 0.5 1.7 8.3 0.0 3.7 4 0 0 4 4 3 1 NTPase Zeta_toxin PF06414.7 gi|57641867|ref|YP_184345.1| - 1.7e-05 24.0 0.4 0.029 13.4 0.0 2.3 2 0 0 2 2 2 2 Zeta toxin KTI12 PF08433.5 gi|57641867|ref|YP_184345.1| - 2.4e-05 23.6 0.0 0.017 14.3 0.0 2.9 3 0 0 3 3 3 1 Chromatin associated protein KTI12 Zot PF05707.7 gi|57641867|ref|YP_184345.1| - 3.1e-05 23.5 0.2 0.19 11.1 0.0 2.3 2 0 0 2 2 2 2 Zonular occludens toxin (Zot) MobB PF03205.9 gi|57641867|ref|YP_184345.1| - 3.2e-05 23.6 0.1 0.027 14.1 0.0 2.7 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B UPF0079 PF02367.12 gi|57641867|ref|YP_184345.1| - 4.3e-05 23.1 1.4 0.026 14.1 0.2 2.5 2 0 0 2 2 2 1 Uncharacterised P-loop hydrolase UPF0079 AAA_5 PF07728.9 gi|57641867|ref|YP_184345.1| - 4.5e-05 23.1 0.2 0.15 11.7 0.0 2.6 2 1 0 2 2 2 2 AAA domain (dynein-related subfamily) APS_kinase PF01583.15 gi|57641867|ref|YP_184345.1| - 0.00012 21.8 0.1 0.12 12.0 0.0 2.3 2 0 0 2 2 2 1 Adenylylsulphate kinase AAA_11 PF13086.1 gi|57641867|ref|YP_184345.1| - 0.00013 21.6 0.0 0.11 12.1 0.0 2.4 2 1 0 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|57641867|ref|YP_184345.1| - 0.00014 21.7 0.1 0.59 10.0 0.0 2.6 2 1 0 2 2 2 2 AAA domain Sigma54_activat PF00158.21 gi|57641867|ref|YP_184345.1| - 0.00018 21.0 0.0 0.42 10.0 0.0 2.3 2 0 0 2 2 2 2 Sigma-54 interaction domain Mg_chelatase PF01078.16 gi|57641867|ref|YP_184345.1| - 0.0002 20.6 0.4 0.41 9.7 0.0 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI cobW PF02492.14 gi|57641867|ref|YP_184345.1| - 0.00024 20.6 0.1 0.65 9.4 0.0 2.4 2 0 0 2 2 2 2 CobW/HypB/UreG, nucleotide-binding domain AAA_35 PF14516.1 gi|57641867|ref|YP_184345.1| - 0.0004 19.1 0.0 0.36 9.4 0.0 2.2 2 0 0 2 2 2 2 AAA-like domain CobU PF02283.11 gi|57641867|ref|YP_184345.1| - 0.00044 19.7 0.0 0.0044 16.4 0.0 2.3 2 0 0 2 2 2 1 Cobinamide kinase / cobinamide phosphate guanyltransferase RNA_helicase PF00910.17 gi|57641867|ref|YP_184345.1| - 0.00049 20.2 0.1 0.81 9.8 0.0 2.9 3 0 0 3 3 2 1 RNA helicase AAA_29 PF13555.1 gi|57641867|ref|YP_184345.1| - 0.00063 19.2 3.2 0.32 10.5 0.1 3.1 3 0 0 3 3 3 1 P-loop containing region of AAA domain AAA_30 PF13604.1 gi|57641867|ref|YP_184345.1| - 0.0028 17.2 0.1 0.19 11.3 0.0 2.2 2 0 0 2 2 2 1 AAA domain Torsin PF06309.6 gi|57641867|ref|YP_184345.1| - 0.0029 17.4 0.1 0.59 10.0 0.0 2.6 3 0 0 3 3 2 1 Torsin SRPRB PF09439.5 gi|57641867|ref|YP_184345.1| - 0.0031 16.7 0.1 2 7.5 0.0 2.4 2 0 0 2 2 2 1 Signal recognition particle receptor beta subunit RuvB_N PF05496.7 gi|57641867|ref|YP_184345.1| - 0.0036 16.3 0.8 1.7 7.6 0.0 2.6 2 1 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus AAA_28 PF13521.1 gi|57641867|ref|YP_184345.1| - 0.004 17.1 0.0 3.9 7.4 0.0 2.7 2 0 0 2 2 2 0 AAA domain PAXNEB PF05625.6 gi|57641867|ref|YP_184345.1| - 0.004 16.0 4.3 0.41 9.4 0.1 2.2 2 0 0 2 2 2 2 PAXNEB protein Sigma54_activ_2 PF14532.1 gi|57641867|ref|YP_184345.1| - 0.0072 16.3 0.0 3.9 7.5 0.0 2.5 2 0 0 2 2 2 0 Sigma-54 interaction domain TrwB_AAD_bind PF10412.4 gi|57641867|ref|YP_184345.1| - 0.0096 14.5 0.1 1.3 7.5 0.0 2.4 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain PIF1 PF05970.9 gi|57641867|ref|YP_184345.1| - 0.011 14.6 0.3 0.25 10.2 0.0 2.2 2 0 0 2 2 2 0 PIF1-like helicase AAA_2 PF07724.9 gi|57641867|ref|YP_184345.1| - 0.022 14.6 0.0 0.3 10.9 0.0 2.3 2 0 0 2 2 2 0 AAA domain (Cdc48 subfamily) Pox_A32 PF04665.7 gi|57641867|ref|YP_184345.1| - 0.024 13.9 0.7 1.8 7.8 0.1 2.4 2 0 0 2 2 2 0 Poxvirus A32 protein FtsK_SpoIIIE PF01580.13 gi|57641867|ref|YP_184345.1| - 0.026 13.9 1.6 1.9 7.9 0.1 2.3 2 0 0 2 2 2 0 FtsK/SpoIIIE family ArgK PF03308.11 gi|57641867|ref|YP_184345.1| - 0.042 12.6 0.5 3.8 6.1 0.0 2.9 2 1 1 3 3 3 0 ArgK protein KAP_NTPase PF07693.9 gi|57641867|ref|YP_184345.1| - 0.057 12.4 0.0 2.5 7.0 0.1 2.6 2 2 0 2 2 2 0 KAP family P-loop domain DUF853 PF05872.7 gi|57641867|ref|YP_184345.1| - 0.059 11.7 0.0 0.094 11.0 0.0 1.3 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF853) Viral_helicase1 PF01443.13 gi|57641867|ref|YP_184345.1| - 0.06 12.8 0.0 9.6 5.6 0.0 2.3 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase PPV_E1_C PF00519.12 gi|57641867|ref|YP_184345.1| - 0.083 11.4 0.1 0.46 9.0 0.0 1.9 2 0 0 2 2 2 0 Papillomavirus helicase Thymidylate_kin PF02223.12 gi|57641867|ref|YP_184345.1| - 0.11 11.8 0.1 0.84 8.9 0.0 2.4 3 0 0 3 3 2 0 Thymidylate kinase ArsA_ATPase PF02374.10 gi|57641867|ref|YP_184345.1| - 0.16 10.9 0.7 0.73 8.8 0.1 2.1 1 1 0 2 2 2 0 Anion-transporting ATPase Adeno_IVa2 PF02456.10 gi|57641867|ref|YP_184345.1| - 0.17 10.4 0.0 1.6 7.2 0.0 2.1 1 1 1 2 2 2 0 Adenovirus IVa2 protein RNA12 PF10443.4 gi|57641867|ref|YP_184345.1| - 0.17 10.3 0.0 4 5.8 0.0 2.6 3 0 0 3 3 3 0 RNA12 protein AAA_23 PF13476.1 gi|57641867|ref|YP_184345.1| - 0.18 12.1 6.0 0.19 12.0 0.9 2.8 2 1 1 3 3 3 0 AAA domain NB-ARC PF00931.17 gi|57641867|ref|YP_184345.1| - 0.22 10.3 0.7 9.3 5.0 0.0 2.3 2 0 0 2 2 2 0 NB-ARC domain MTS PF05175.9 gi|57641868|ref|YP_184346.1| - 2.4e-16 59.5 0.0 3.4e-16 59.1 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_26 PF13659.1 gi|57641868|ref|YP_184346.1| - 1.4e-14 54.1 0.0 2e-14 53.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|57641868|ref|YP_184346.1| - 3.9e-14 53.1 0.0 5.7e-14 52.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|57641868|ref|YP_184346.1| - 2.3e-13 49.9 0.3 3.1e-13 49.5 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) UPF0020 PF01170.13 gi|57641868|ref|YP_184346.1| - 1.9e-12 47.1 0.0 2.6e-12 46.6 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_31 PF13847.1 gi|57641868|ref|YP_184346.1| - 1.7e-11 43.9 0.0 1.9e-11 43.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|57641868|ref|YP_184346.1| - 1.8e-11 43.7 0.0 2.9e-11 43.1 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Met_10 PF02475.11 gi|57641868|ref|YP_184346.1| - 3.8e-08 33.1 0.4 1.3e-07 31.4 0.1 1.7 1 1 1 2 2 2 1 Met-10+ like-protein Methyltransf_25 PF13649.1 gi|57641868|ref|YP_184346.1| - 2.8e-07 30.8 0.0 6e-07 29.7 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.5 gi|57641868|ref|YP_184346.1| - 1.6e-06 27.7 0.0 2.2e-06 27.3 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_11 PF08241.7 gi|57641868|ref|YP_184346.1| - 0.0022 18.4 0.0 0.004 17.5 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_32 PF13679.1 gi|57641868|ref|YP_184346.1| - 0.0026 17.4 0.0 0.0032 17.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_3 PF01596.12 gi|57641868|ref|YP_184346.1| - 0.0047 16.0 0.0 0.0061 15.6 0.0 1.1 1 0 0 1 1 1 1 O-methyltransferase RrnaAD PF00398.15 gi|57641868|ref|YP_184346.1| - 0.007 15.4 0.0 0.0092 15.0 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_16 PF10294.4 gi|57641868|ref|YP_184346.1| - 0.01 15.3 0.2 0.017 14.5 0.1 1.4 1 0 0 1 1 1 0 Putative methyltransferase N6_Mtase PF02384.11 gi|57641868|ref|YP_184346.1| - 0.024 13.7 0.0 0.038 13.0 0.0 1.3 1 0 0 1 1 1 0 N-6 DNA Methylase DNA_methylase PF00145.12 gi|57641868|ref|YP_184346.1| - 0.065 12.3 0.0 0.095 11.7 0.0 1.1 1 0 0 1 1 1 0 C-5 cytosine-specific DNA methylase PCMT PF01135.14 gi|57641868|ref|YP_184346.1| - 0.14 11.6 0.1 0.2 11.1 0.0 1.1 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Nol1_Nop2_Fmu PF01189.12 gi|57641870|ref|YP_184348.1| - 1e-64 218.6 0.0 1.3e-64 218.3 0.0 1.1 1 0 0 1 1 1 1 NOL1/NOP2/sun family Methyltransf_31 PF13847.1 gi|57641870|ref|YP_184348.1| - 1.8e-11 43.8 0.0 7.7e-11 41.7 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|57641870|ref|YP_184348.1| - 8.3e-11 41.9 0.0 1.7e-10 40.9 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|57641870|ref|YP_184348.1| - 1.9e-07 31.6 0.0 3.9e-07 30.6 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|57641870|ref|YP_184348.1| - 1.2e-05 24.7 0.0 1.9e-05 24.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain FtsJ PF01728.14 gi|57641870|ref|YP_184348.1| - 3e-05 24.0 0.0 7.5e-05 22.7 0.0 1.6 1 1 0 1 1 1 1 FtsJ-like methyltransferase Ubie_methyltran PF01209.13 gi|57641870|ref|YP_184348.1| - 4.1e-05 22.8 0.0 0.00058 19.0 0.0 2.1 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.1 gi|57641870|ref|YP_184348.1| - 0.0065 16.2 0.0 0.59 9.8 0.0 2.3 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|57641870|ref|YP_184348.1| - 0.0099 16.3 0.0 0.9 10.0 0.0 2.6 2 0 0 2 2 2 1 Methyltransferase domain Fibrillarin PF01269.12 gi|57641870|ref|YP_184348.1| - 0.016 14.1 0.0 0.027 13.3 0.0 1.3 1 0 0 1 1 1 0 Fibrillarin Methyltransf_5 PF01795.14 gi|57641870|ref|YP_184348.1| - 0.032 13.5 0.0 0.42 9.8 0.0 2.1 2 0 0 2 2 2 0 MraW methylase family RrnaAD PF00398.15 gi|57641870|ref|YP_184348.1| - 0.038 13.0 0.0 0.086 11.8 0.0 1.5 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase PCMT PF01135.14 gi|57641870|ref|YP_184348.1| - 0.043 13.3 0.0 0.1 12.1 0.0 1.6 2 0 0 2 2 2 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_24 PF13578.1 gi|57641870|ref|YP_184348.1| - 0.06 14.1 0.0 0.48 11.2 0.0 2.4 2 1 0 2 2 1 0 Methyltransferase domain NusB PF01029.13 gi|57641870|ref|YP_184348.1| - 0.077 12.9 0.0 0.18 11.7 0.0 1.6 1 0 0 1 1 1 0 NusB family PRA-PH PF01503.12 gi|57641870|ref|YP_184348.1| - 0.38 11.0 4.4 9 6.6 0.0 3.6 4 1 0 4 4 3 0 Phosphoribosyl-ATP pyrophosphohydrolase ABC_tran PF00005.22 gi|57641871|ref|YP_184349.1| - 3.3e-18 66.2 0.0 7.6e-18 65.1 0.0 1.6 1 1 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|57641871|ref|YP_184349.1| - 7e-16 59.0 2.3 1.7e-08 34.7 0.1 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|57641871|ref|YP_184349.1| - 5.8e-08 32.2 0.9 0.00021 20.5 0.2 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|57641871|ref|YP_184349.1| - 2.3e-07 31.3 1.1 4.7e-07 30.3 0.3 1.6 2 0 0 2 2 2 1 AAA domain AAA_15 PF13175.1 gi|57641871|ref|YP_184349.1| - 1.5e-05 24.2 0.6 0.0023 17.0 0.2 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.1 gi|57641871|ref|YP_184349.1| - 4.2e-05 23.0 0.1 9.2e-05 21.8 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_10 PF12846.2 gi|57641871|ref|YP_184349.1| - 0.00039 19.9 0.7 0.02 14.3 0.2 2.0 1 1 0 2 2 2 1 AAA-like domain AAA_13 PF13166.1 gi|57641871|ref|YP_184349.1| - 0.0016 17.0 0.0 0.2 10.1 0.0 2.1 2 0 0 2 2 2 1 AAA domain DUF258 PF03193.11 gi|57641871|ref|YP_184349.1| - 0.0031 16.7 0.1 0.005 16.0 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 Adeno_IVa2 PF02456.10 gi|57641871|ref|YP_184349.1| - 0.0098 14.5 0.0 0.099 11.2 0.0 2.0 2 0 0 2 2 2 1 Adenovirus IVa2 protein AAA_22 PF13401.1 gi|57641871|ref|YP_184349.1| - 0.014 15.5 0.0 0.027 14.6 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|57641871|ref|YP_184349.1| - 0.016 15.2 0.4 0.026 14.5 0.3 1.7 1 1 0 1 1 1 0 AAA ATPase domain AAA_30 PF13604.1 gi|57641871|ref|YP_184349.1| - 0.025 14.1 0.0 0.079 12.5 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.1 gi|57641871|ref|YP_184349.1| - 0.035 13.5 0.0 0.094 12.0 0.0 1.7 2 0 0 2 2 2 0 AAA domain SbcCD_C PF13558.1 gi|57641871|ref|YP_184349.1| - 0.055 13.3 0.0 0.1 12.5 0.0 1.5 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit Arch_ATPase PF01637.13 gi|57641871|ref|YP_184349.1| - 0.065 12.9 0.1 0.14 11.8 0.0 1.5 1 0 0 1 1 1 0 Archaeal ATPase AAA_19 PF13245.1 gi|57641871|ref|YP_184349.1| - 0.082 12.6 0.0 0.29 10.9 0.0 1.9 2 0 0 2 2 2 0 Part of AAA domain Zeta_toxin PF06414.7 gi|57641871|ref|YP_184349.1| - 0.086 11.9 0.2 0.27 10.2 0.0 1.8 2 0 0 2 2 2 0 Zeta toxin ABC_ATPase PF09818.4 gi|57641871|ref|YP_184349.1| - 0.12 10.9 0.0 0.19 10.3 0.0 1.2 1 0 0 1 1 1 0 Predicted ATPase of the ABC class RNA12 PF10443.4 gi|57641871|ref|YP_184349.1| - 0.13 10.7 0.1 0.18 10.2 0.0 1.2 1 0 0 1 1 1 0 RNA12 protein AAA_17 PF13207.1 gi|57641871|ref|YP_184349.1| - 0.13 13.1 0.4 0.2 12.4 0.3 1.8 1 1 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|57641871|ref|YP_184349.1| - 0.14 11.7 0.2 0.47 10.0 0.0 1.8 2 0 0 2 2 2 0 NACHT domain MobB PF03205.9 gi|57641871|ref|YP_184349.1| - 0.15 11.7 0.0 0.29 10.8 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B ABC2_membrane_2 PF12679.2 gi|57641873|ref|YP_184351.1| - 8.5e-07 28.1 23.2 2.3e-06 26.6 16.1 1.6 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|57641873|ref|YP_184351.1| - 2.4e-05 23.6 28.4 3.2e-05 23.2 19.7 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|57641873|ref|YP_184351.1| - 0.00013 21.3 29.0 0.0011 18.3 20.2 1.9 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|57641873|ref|YP_184351.1| - 0.00068 18.7 21.4 0.00091 18.3 14.8 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein MS_channel PF00924.13 gi|57641875|ref|YP_184353.1| - 4.3e-64 215.6 0.1 4.3e-64 215.6 0.1 1.8 3 0 0 3 3 3 1 Mechanosensitive ion channel TM_helix PF05552.7 gi|57641875|ref|YP_184353.1| - 0.0081 15.8 13.5 0.012 15.2 2.1 3.1 3 0 0 3 3 3 2 Conserved TM helix DUF432 PF04254.8 gi|57641876|ref|YP_184354.1| - 5.8e-39 132.7 0.1 2e-38 131.0 0.0 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF432) DUF434 PF04256.7 gi|57641878|ref|YP_184356.1| - 2.1e-28 97.4 4.5 9.5e-28 95.3 1.7 2.3 2 0 0 2 2 2 1 Protein of unknown function (DUF434) HD PF01966.17 gi|57641879|ref|YP_184357.1| - 6.3e-05 22.9 0.1 0.00014 21.8 0.0 1.6 1 1 0 1 1 1 1 HD domain Fcf1 PF04900.7 gi|57641880|ref|YP_184358.1| - 1.1e-17 63.9 0.0 1.4e-17 63.6 0.0 1.1 1 0 0 1 1 1 1 Fcf1 PIN_4 PF13638.1 gi|57641880|ref|YP_184358.1| - 1.9e-05 24.7 0.4 0.0011 19.1 0.3 2.1 1 1 0 1 1 1 1 PIN domain PIN PF01850.16 gi|57641880|ref|YP_184358.1| - 0.022 15.1 0.2 0.086 13.1 0.1 1.9 1 1 0 1 1 1 0 PIN domain Nucleotid_trans PF03407.11 gi|57641880|ref|YP_184358.1| - 0.12 12.1 0.0 0.18 11.5 0.0 1.3 1 0 0 1 1 1 0 Nucleotide-diphospho-sugar transferase GTP_EFTU PF00009.22 gi|57641881|ref|YP_184359.1| - 3.8e-48 163.4 0.1 5.6e-48 162.8 0.1 1.2 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain eIF2_C PF09173.6 gi|57641881|ref|YP_184359.1| - 4.7e-33 113.1 0.1 1.1e-32 111.9 0.1 1.6 1 0 0 1 1 1 1 Initiation factor eIF2 gamma, C terminal GTP_EFTU_D2 PF03144.20 gi|57641881|ref|YP_184359.1| - 9.9e-11 41.6 1.4 3.3e-10 39.9 1.0 2.0 1 0 0 1 1 1 1 Elongation factor Tu domain 2 zf-ribbon_3 PF13248.1 gi|57641881|ref|YP_184359.1| - 0.00015 20.8 4.3 0.00029 19.9 3.0 1.5 1 0 0 1 1 1 1 zinc-ribbon domain MMR_HSR1 PF01926.18 gi|57641881|ref|YP_184359.1| - 0.00015 21.6 0.0 0.00026 20.8 0.0 1.4 1 0 0 1 1 1 1 50S ribosome-binding GTPase RecR PF02132.10 gi|57641881|ref|YP_184359.1| - 0.00068 19.0 0.3 0.0013 18.1 0.2 1.4 1 0 0 1 1 1 1 RecR protein PolC_DP2 PF03833.8 gi|57641881|ref|YP_184359.1| - 0.00073 17.3 0.0 0.0011 16.8 0.0 1.2 1 0 0 1 1 1 1 DNA polymerase II large subunit DP2 PduV-EutP PF10662.4 gi|57641881|ref|YP_184359.1| - 0.0017 17.8 0.4 0.25 10.8 0.0 2.3 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation Nop10p PF04135.7 gi|57641881|ref|YP_184359.1| - 0.012 15.2 0.4 0.021 14.5 0.3 1.3 1 0 0 1 1 1 0 Nucleolar RNA-binding protein, Nop10p family FeoB_N PF02421.13 gi|57641881|ref|YP_184359.1| - 0.013 14.8 1.4 1.6 8.0 0.2 2.4 2 1 0 2 2 2 0 Ferrous iron transport protein B zinc_ribbon_2 PF13240.1 gi|57641881|ref|YP_184359.1| - 0.025 14.0 8.9 0.093 12.2 6.2 1.9 1 1 0 1 1 1 0 zinc-ribbon domain DZR PF12773.2 gi|57641881|ref|YP_184359.1| - 0.029 14.1 1.0 0.053 13.3 0.7 1.3 1 0 0 1 1 1 0 Double zinc ribbon Cys_rich_CPXG PF14255.1 gi|57641881|ref|YP_184359.1| - 0.061 13.1 3.7 0.99 9.2 0.1 2.5 2 0 0 2 2 2 0 Cysteine-rich CPXCG Zn-ribbon_8 PF09723.5 gi|57641881|ref|YP_184359.1| - 0.16 11.9 3.5 8.8 6.3 0.3 2.4 1 1 2 3 3 3 0 Zinc ribbon domain zf-NADH-PPase PF09297.6 gi|57641881|ref|YP_184359.1| - 0.16 11.4 3.4 0.75 9.3 0.2 2.3 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain UPF0547 PF10571.4 gi|57641881|ref|YP_184359.1| - 0.26 11.0 9.0 0.86 9.3 0.5 2.4 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 CpXC PF14353.1 gi|57641881|ref|YP_184359.1| - 0.32 10.9 1.0 4 7.4 0.0 2.2 1 1 1 2 2 2 0 CpXC protein Lar_restr_allev PF14354.1 gi|57641881|ref|YP_184359.1| - 0.33 11.2 4.1 5.9 7.2 0.1 2.4 1 1 1 2 2 2 0 Restriction alleviation protein Lar zf-tcix PF14952.1 gi|57641881|ref|YP_184359.1| - 0.97 8.8 3.7 0.46 9.8 0.1 2.0 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding Zn_Tnp_IS1595 PF12760.2 gi|57641881|ref|YP_184359.1| - 1.2 9.0 7.7 2 8.2 0.4 2.3 1 1 1 2 2 2 0 Transposase zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|57641881|ref|YP_184359.1| - 2 7.7 4.5 4.7 6.6 0.2 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding TerY-C PF15616.1 gi|57641881|ref|YP_184359.1| - 2.2 8.2 4.3 20 5.1 3.0 2.1 1 1 0 1 1 1 0 TerY-C metal binding domain zf-ISL3 PF14690.1 gi|57641881|ref|YP_184359.1| - 3.9 7.5 7.7 16 5.6 0.3 2.6 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Bax1-I PF01027.15 gi|57641882|ref|YP_184360.1| - 0.026 14.1 8.5 0.032 13.8 5.9 1.1 1 0 0 1 1 1 0 Inhibitor of apoptosis-promoting Bax1 DUF2592 PF10766.4 gi|57641883|ref|YP_184361.1| - 0.032 13.5 0.9 0.032 13.5 0.6 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF2592) DUF2157 PF09925.4 gi|57641883|ref|YP_184361.1| - 3.8 7.1 8.8 0.64 9.6 2.6 1.9 1 1 1 2 2 2 0 Predicted membrane protein (DUF2157) LPAM_1 PF08139.7 gi|57641884|ref|YP_184362.1| - 0.11 12.7 0.2 0.21 11.8 0.1 1.5 1 0 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site Ribosomal_S6e PF01092.14 gi|57641886|ref|YP_184364.1| - 3.2e-33 114.0 0.2 7.1e-33 112.9 0.2 1.5 1 1 0 1 1 1 1 Ribosomal protein S6e Sec61_beta PF03911.11 gi|57641887|ref|YP_184365.1| - 7.9e-18 63.9 0.1 9.1e-18 63.7 0.1 1.1 1 0 0 1 1 1 1 Sec61beta family GAS PF13851.1 gi|57641888|ref|YP_184366.1| - 6.1e-05 22.2 12.1 9.7e-05 21.6 8.4 1.3 1 0 0 1 1 1 1 Growth-arrest specific micro-tubule binding AAA_27 PF13514.1 gi|57641888|ref|YP_184366.1| - 0.00062 17.6 4.7 0.00062 17.6 3.3 1.6 1 1 0 1 1 1 1 AAA domain CCDC155 PF14662.1 gi|57641888|ref|YP_184366.1| - 0.00063 19.3 10.8 0.00097 18.7 7.5 1.3 1 0 0 1 1 1 1 Coiled-coil region of CCDC155 PRC PF05239.11 gi|57641888|ref|YP_184366.1| - 0.00078 19.2 1.2 0.0016 18.2 0.9 1.6 1 0 0 1 1 1 1 PRC-barrel domain Atg14 PF10186.4 gi|57641888|ref|YP_184366.1| - 0.0018 17.2 4.4 0.0026 16.7 3.1 1.3 1 0 0 1 1 1 1 UV radiation resistance protein and autophagy-related subunit 14 IncA PF04156.9 gi|57641888|ref|YP_184366.1| - 0.0056 16.2 8.5 0.0081 15.7 5.9 1.2 1 0 0 1 1 1 1 IncA protein CENP-Q PF13094.1 gi|57641888|ref|YP_184366.1| - 0.0067 16.4 8.9 0.011 15.7 6.2 1.3 1 0 0 1 1 1 1 CENP-Q, a CENPA-CAD centromere complex subunit BLOC1_2 PF10046.4 gi|57641888|ref|YP_184366.1| - 0.0082 16.2 9.0 0.065 13.3 0.9 2.4 1 1 1 2 2 2 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 AAA_13 PF13166.1 gi|57641888|ref|YP_184366.1| - 0.014 13.9 3.6 0.017 13.6 2.5 1.1 1 0 0 1 1 1 0 AAA domain KxDL PF10241.4 gi|57641888|ref|YP_184366.1| - 0.019 14.8 6.6 0.41 10.5 2.7 2.2 1 1 1 2 2 2 0 Uncharacterized conserved protein APG6 PF04111.7 gi|57641888|ref|YP_184366.1| - 0.027 13.5 8.9 0.036 13.1 6.2 1.2 1 0 0 1 1 1 0 Autophagy protein Apg6 HAUS4 PF14735.1 gi|57641888|ref|YP_184366.1| - 0.031 13.5 6.8 0.099 11.9 4.7 1.8 1 1 0 1 1 1 0 HAUS augmin-like complex subunit 4 Spc7 PF08317.6 gi|57641888|ref|YP_184366.1| - 0.034 12.8 12.8 0.047 12.3 8.9 1.1 1 0 0 1 1 1 0 Spc7 kinetochore protein V_ATPase_I PF01496.14 gi|57641888|ref|YP_184366.1| - 0.036 11.9 3.7 0.038 11.8 2.5 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family IFP_35_N PF07334.8 gi|57641888|ref|YP_184366.1| - 0.039 13.9 5.7 0.039 13.9 4.0 1.8 2 0 0 2 2 1 0 Interferon-induced 35 kDa protein (IFP 35) N-terminus Rootletin PF15035.1 gi|57641888|ref|YP_184366.1| - 0.045 13.7 11.3 0.07 13.1 7.9 1.2 1 0 0 1 1 1 0 Ciliary rootlet component, centrosome cohesion Phage_GP20 PF06810.6 gi|57641888|ref|YP_184366.1| - 0.061 12.7 12.4 0.34 10.3 4.1 2.2 1 1 1 2 2 2 0 Phage minor structural protein GP20 DUF972 PF06156.8 gi|57641888|ref|YP_184366.1| - 0.063 13.6 11.7 0.078 13.3 6.9 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF972) CALCOCO1 PF07888.6 gi|57641888|ref|YP_184366.1| - 0.079 11.2 6.9 0.1 10.8 4.7 1.1 1 0 0 1 1 1 0 Calcium binding and coiled-coil domain (CALCOCO1) like HALZ PF02183.13 gi|57641888|ref|YP_184366.1| - 0.085 12.5 13.7 0.71 9.6 3.5 3.8 2 1 2 4 4 3 0 Homeobox associated leucine zipper MoCF_biosynth PF00994.19 gi|57641888|ref|YP_184366.1| - 0.11 11.8 0.1 0.34 10.3 0.1 1.7 1 1 0 1 1 1 0 Probable molybdopterin binding domain XRCC4 PF06632.7 gi|57641888|ref|YP_184366.1| - 0.14 10.9 6.2 0.19 10.5 3.0 2.1 2 1 1 3 3 3 0 DNA double-strand break repair and V(D)J recombination protein XRCC4 HAUS6_N PF14661.1 gi|57641888|ref|YP_184366.1| - 0.14 11.4 3.1 0.19 11.0 2.2 1.2 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 6 N-terminus HlyD PF00529.15 gi|57641888|ref|YP_184366.1| - 0.15 11.3 2.8 0.2 10.9 1.9 1.1 1 0 0 1 1 1 0 HlyD family secretion protein Syntaxin_2 PF14523.1 gi|57641888|ref|YP_184366.1| - 0.2 11.7 6.7 1.3 9.1 3.3 2.2 1 1 1 2 2 2 0 Syntaxin-like protein DUF4355 PF14265.1 gi|57641888|ref|YP_184366.1| - 0.22 11.4 11.1 0.32 10.9 7.7 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4355) zf-C4H2 PF10146.4 gi|57641888|ref|YP_184366.1| - 0.23 11.4 13.4 0.33 10.9 9.3 1.1 1 0 0 1 1 1 0 Zinc finger-containing protein DUF1664 PF07889.7 gi|57641888|ref|YP_184366.1| - 0.26 11.1 5.2 0.37 10.6 1.9 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) Laminin_I PF06008.9 gi|57641888|ref|YP_184366.1| - 0.39 9.9 10.2 1.9 7.7 6.9 1.8 1 1 0 1 1 1 0 Laminin Domain I DivIVA PF05103.8 gi|57641888|ref|YP_184366.1| - 0.41 10.7 12.1 2 8.4 8.4 2.2 1 1 0 1 1 1 0 DivIVA protein Bap31 PF05529.7 gi|57641888|ref|YP_184366.1| - 0.45 9.9 6.8 0.78 9.1 4.7 1.4 1 0 0 1 1 1 0 B-cell receptor-associated protein 31-like CENP-H PF05837.7 gi|57641888|ref|YP_184366.1| - 0.47 10.6 8.5 0.9 9.7 5.9 1.6 1 1 0 1 1 1 0 Centromere protein H (CENP-H) DUF1825 PF08855.5 gi|57641888|ref|YP_184366.1| - 0.47 10.4 6.4 0.97 9.4 4.5 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF1825) DUF724 PF05266.9 gi|57641888|ref|YP_184366.1| - 0.48 10.0 8.7 0.67 9.5 6.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF724) DUF342 PF03961.8 gi|57641888|ref|YP_184366.1| - 0.58 8.5 10.9 0.78 8.0 7.5 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF342) RFC1 PF08519.7 gi|57641888|ref|YP_184366.1| - 0.58 9.9 2.4 1 9.1 1.7 1.5 1 1 0 1 1 1 0 Replication factor RFC1 C terminal domain ATP-synt_E PF05680.7 gi|57641888|ref|YP_184366.1| - 0.61 10.0 4.9 1.3 9.0 3.4 1.5 1 0 0 1 1 1 0 ATP synthase E chain SlyX PF04102.7 gi|57641888|ref|YP_184366.1| - 0.8 10.1 10.4 2.3 8.6 3.9 2.8 1 1 1 2 2 2 0 SlyX Syntaxin PF00804.20 gi|57641888|ref|YP_184366.1| - 0.98 9.6 9.2 10 6.3 4.5 2.3 1 1 1 2 2 2 0 Syntaxin DUF869 PF05911.6 gi|57641888|ref|YP_184366.1| - 1.1 7.3 12.1 1.3 7.2 8.0 1.4 1 1 0 1 1 1 0 Plant protein of unknown function (DUF869) DUF1319 PF07028.6 gi|57641888|ref|YP_184366.1| - 1.3 9.1 10.6 0.86 9.8 5.4 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1319) NPV_P10 PF05531.7 gi|57641888|ref|YP_184366.1| - 1.5 9.1 3.8 17 5.7 0.2 2.9 1 1 2 3 3 3 0 Nucleopolyhedrovirus P10 protein Erp_C PF06780.6 gi|57641888|ref|YP_184366.1| - 2 8.2 13.7 1.6 8.5 6.7 2.2 1 1 1 2 2 2 0 Erp protein C-terminus Prefoldin PF02996.12 gi|57641888|ref|YP_184366.1| - 2.3 7.8 11.3 3.1 7.4 0.9 3.1 1 1 1 3 3 3 0 Prefoldin subunit AKNA PF12443.3 gi|57641888|ref|YP_184366.1| - 2.4 8.2 6.5 1.1 9.3 2.3 2.0 2 1 0 2 2 1 0 AT-hook-containing transcription factor FlaC_arch PF05377.6 gi|57641888|ref|YP_184366.1| - 2.5 8.0 9.8 14 5.6 0.3 3.2 1 1 1 2 2 2 0 Flagella accessory protein C (FlaC) Prefoldin_2 PF01920.15 gi|57641888|ref|YP_184366.1| - 2.6 7.8 16.0 5.2 6.8 2.9 2.4 1 1 0 2 2 2 0 Prefoldin subunit AAA_23 PF13476.1 gi|57641888|ref|YP_184366.1| - 3.2 8.0 14.2 7.6 6.8 9.8 1.7 1 1 0 1 1 1 0 AAA domain USP8_interact PF08941.5 gi|57641888|ref|YP_184366.1| - 3.4 6.9 5.9 3 7.1 0.5 2.0 1 1 1 2 2 2 0 USP8 interacting Syntaxin-6_N PF09177.6 gi|57641888|ref|YP_184366.1| - 3.6 8.0 8.0 4.5 7.7 4.3 2.0 1 1 1 2 2 2 0 Syntaxin 6, N-terminal GrpE PF01025.14 gi|57641888|ref|YP_184366.1| - 3.9 7.0 12.0 8.1 5.9 8.3 1.5 1 1 0 1 1 1 0 GrpE DUF904 PF06005.7 gi|57641888|ref|YP_184366.1| - 4.8 7.5 20.0 15 5.9 13.9 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF904) Ly49 PF08391.5 gi|57641888|ref|YP_184366.1| - 5.1 7.2 7.8 2.2 8.4 1.2 2.1 1 1 1 2 2 2 0 Ly49-like protein, N-terminal region DUF2570 PF10828.3 gi|57641888|ref|YP_184366.1| - 5.3 6.6 6.9 4.4 6.9 3.6 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF2570) Ead_Ea22 PF13935.1 gi|57641888|ref|YP_184366.1| - 5.5 7.3 10.5 16 5.8 7.3 1.8 1 1 0 1 1 1 0 Ead/Ea22-like protein Spc24 PF08286.6 gi|57641888|ref|YP_184366.1| - 5.8 6.6 9.4 5.8 6.6 5.4 1.8 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 PCRF PF03462.13 gi|57641888|ref|YP_184366.1| - 8 6.1 9.5 10 5.8 2.8 2.8 2 1 0 3 3 3 0 PCRF domain MMR_HSR1 PF01926.18 gi|57641889|ref|YP_184367.1| - 4.7e-17 62.0 0.0 6.4e-17 61.5 0.0 1.2 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|57641889|ref|YP_184367.1| - 5e-13 48.6 0.0 6.2e-12 45.0 0.0 2.0 1 1 0 1 1 1 1 Ferrous iron transport protein B GTP_EFTU PF00009.22 gi|57641889|ref|YP_184367.1| - 9.7e-08 31.6 0.0 9.6e-06 25.1 0.0 2.2 2 0 0 2 2 2 1 Elongation factor Tu GTP binding domain Dynamin_N PF00350.18 gi|57641889|ref|YP_184367.1| - 0.00086 19.1 0.0 0.0026 17.5 0.0 1.6 1 1 0 1 1 1 1 Dynamin family DUF258 PF03193.11 gi|57641889|ref|YP_184367.1| - 0.0011 18.1 0.1 0.0071 15.5 0.1 2.3 2 1 0 2 2 2 1 Protein of unknown function, DUF258 MobB PF03205.9 gi|57641889|ref|YP_184367.1| - 0.0012 18.5 0.0 0.0024 17.5 0.0 1.5 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_18 PF13238.1 gi|57641889|ref|YP_184367.1| - 0.026 14.8 0.5 0.15 12.4 0.3 2.2 1 1 1 2 2 2 0 AAA domain Miro PF08477.8 gi|57641889|ref|YP_184367.1| - 0.027 14.9 0.2 0.32 11.5 0.0 2.3 2 1 0 2 2 2 0 Miro-like protein AAA_17 PF13207.1 gi|57641889|ref|YP_184367.1| - 0.033 15.0 0.5 0.6 10.9 0.2 2.6 2 1 0 2 2 2 0 AAA domain SRPRB PF09439.5 gi|57641889|ref|YP_184367.1| - 0.034 13.3 0.0 0.063 12.4 0.0 1.6 1 1 0 1 1 1 0 Signal recognition particle receptor beta subunit AAA_25 PF13481.1 gi|57641889|ref|YP_184367.1| - 0.061 12.7 0.2 0.34 10.2 0.0 2.0 1 1 1 2 2 2 0 AAA domain YcaO PF02624.11 gi|57641889|ref|YP_184367.1| - 0.069 12.6 0.0 0.08 12.4 0.0 1.1 1 0 0 1 1 1 0 YcaO-like family Ras PF00071.17 gi|57641889|ref|YP_184367.1| - 0.083 12.2 0.1 0.97 8.8 0.0 2.1 2 0 0 2 2 2 0 Ras family ArgK PF03308.11 gi|57641889|ref|YP_184367.1| - 0.11 11.2 0.6 1.1 7.9 0.1 2.1 2 0 0 2 2 2 0 ArgK protein PduV-EutP PF10662.4 gi|57641889|ref|YP_184367.1| - 0.15 11.5 0.0 0.61 9.5 0.0 1.9 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation AsnC_trans_reg PF01037.16 gi|57641890|ref|YP_184368.1| - 6.2e-09 35.4 0.2 1.2e-08 34.5 0.1 1.5 1 0 0 1 1 1 1 AsnC family HTH_24 PF13412.1 gi|57641890|ref|YP_184368.1| - 1.1e-07 31.0 1.3 2.1e-06 26.9 0.1 2.5 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|57641890|ref|YP_184368.1| - 1.9e-07 30.6 0.0 3.9e-07 29.6 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.15 gi|57641890|ref|YP_184368.1| - 8.3e-07 28.5 0.2 3.6e-06 26.5 0.0 2.0 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_27 PF13463.1 gi|57641890|ref|YP_184368.1| - 1.1e-06 28.9 0.3 2.6e-06 27.6 0.2 1.7 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_20 PF12840.2 gi|57641890|ref|YP_184368.1| - 2.2e-06 27.3 0.1 5.7e-06 26.0 0.1 1.8 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|57641890|ref|YP_184368.1| - 5.8e-06 26.0 0.7 2.2e-05 24.1 0.0 2.1 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_11 PF08279.7 gi|57641890|ref|YP_184368.1| - 1.2e-05 24.8 3.6 2.6e-05 23.7 0.7 2.8 2 2 0 2 2 2 1 HTH domain HTH_10 PF04967.7 gi|57641890|ref|YP_184368.1| - 8.6e-05 22.0 0.9 0.013 15.1 0.0 3.0 3 0 0 3 3 3 1 HTH DNA binding domain MarR PF01047.17 gi|57641890|ref|YP_184368.1| - 0.00015 21.3 0.5 0.00038 20.0 0.2 1.8 2 1 0 2 2 1 1 MarR family TrmB PF01978.14 gi|57641890|ref|YP_184368.1| - 0.00027 20.5 0.4 0.018 14.7 0.0 2.7 3 0 0 3 3 3 1 Sugar-specific transcriptional regulator TrmB HTH_34 PF13601.1 gi|57641890|ref|YP_184368.1| - 0.00071 19.5 0.1 0.0014 18.6 0.1 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain LexA_DNA_bind PF01726.11 gi|57641890|ref|YP_184368.1| - 0.0018 17.7 0.1 0.0049 16.4 0.1 1.7 1 0 0 1 1 1 1 LexA DNA binding domain HTH_36 PF13730.1 gi|57641890|ref|YP_184368.1| - 0.0018 18.3 0.2 0.0018 18.3 0.1 2.0 2 1 0 2 2 1 1 Helix-turn-helix domain ssDNA-exonuc_C PF10141.4 gi|57641890|ref|YP_184368.1| - 0.0019 17.7 0.1 0.0061 16.0 0.0 1.7 2 0 0 2 2 2 1 Single-strand DNA-specific exonuclease, C terminal domain Sigma70_r4 PF04545.11 gi|57641890|ref|YP_184368.1| - 0.0042 16.3 0.1 0.021 14.1 0.0 2.2 1 1 0 1 1 1 1 Sigma-70, region 4 HTH_28 PF13518.1 gi|57641890|ref|YP_184368.1| - 0.0074 16.2 0.4 0.17 11.9 0.0 2.9 2 2 1 3 3 3 1 Helix-turn-helix domain HTH_3 PF01381.17 gi|57641890|ref|YP_184368.1| - 0.013 15.2 0.1 0.042 13.7 0.0 1.9 1 0 0 1 1 1 0 Helix-turn-helix DUF4423 PF14394.1 gi|57641890|ref|YP_184368.1| - 0.015 14.8 0.3 0.029 13.9 0.0 1.5 2 0 0 2 2 1 0 Domain of unknown function (DUF4423) DUF1814 PF08843.6 gi|57641890|ref|YP_184368.1| - 0.016 14.9 0.3 0.046 13.5 0.1 1.7 1 1 1 2 2 2 0 Nucleotidyl transferase of unknown function (DUF1814) Rrf2 PF02082.15 gi|57641890|ref|YP_184368.1| - 0.016 15.2 0.1 0.047 13.8 0.0 1.8 1 0 0 1 1 1 0 Transcriptional regulator HTH_Mga PF08280.6 gi|57641890|ref|YP_184368.1| - 0.017 14.8 2.4 0.042 13.6 1.0 2.1 2 1 0 2 2 1 0 M protein trans-acting positive regulator (MGA) HTH domain Radical_SAM PF04055.16 gi|57641890|ref|YP_184368.1| - 0.021 14.9 1.4 0.29 11.2 0.2 2.0 1 1 1 2 2 2 0 Radical SAM superfamily HTH_Tnp_1_2 PF13022.1 gi|57641890|ref|YP_184368.1| - 0.037 13.8 0.3 0.069 12.9 0.0 1.7 2 1 0 2 2 2 0 Helix-turn-helix of insertion element transposase HTH_IclR PF09339.5 gi|57641890|ref|YP_184368.1| - 0.059 12.9 0.3 0.41 10.2 0.1 2.3 3 0 0 3 3 2 0 IclR helix-turn-helix domain Homeobox PF00046.24 gi|57641890|ref|YP_184368.1| - 0.066 12.8 0.3 0.19 11.3 0.1 1.9 2 1 0 2 2 1 0 Homeobox domain NapD PF03927.8 gi|57641890|ref|YP_184368.1| - 0.07 12.9 0.2 0.3 10.9 0.1 1.9 2 0 0 2 2 2 0 NapD protein Cas_Csa4 PF09703.5 gi|57641890|ref|YP_184368.1| - 0.073 12.0 0.1 0.083 11.8 0.1 1.2 1 0 0 1 1 1 0 CRISPR-associated protein (Cas_Csa4) B-block_TFIIIC PF04182.7 gi|57641890|ref|YP_184368.1| - 0.13 12.0 0.8 0.36 10.7 0.0 2.1 3 0 0 3 3 1 0 B-block binding subunit of TFIIIC Mrr_N PF14338.1 gi|57641890|ref|YP_184368.1| - 0.64 10.1 2.4 2.1 8.5 0.3 2.8 3 1 0 3 3 3 0 Mrr N-terminal domain MobB PF03205.9 gi|57641891|ref|YP_184369.1| - 3.4e-10 39.7 0.2 1.4e-09 37.8 0.0 1.8 1 1 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B Clp1 PF06807.9 gi|57641891|ref|YP_184369.1| - 3.6e-06 26.8 0.1 4.1e-05 23.4 0.0 2.1 1 1 0 1 1 1 1 Pre-mRNA cleavage complex II protein Clp1 CbiA PF01656.18 gi|57641891|ref|YP_184369.1| - 0.00037 19.9 0.3 0.0024 17.2 0.2 2.1 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain SRP54 PF00448.17 gi|57641891|ref|YP_184369.1| - 0.01 15.2 0.2 3.1 7.1 0.0 2.2 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain MMR_HSR1 PF01926.18 gi|57641891|ref|YP_184369.1| - 0.017 15.0 0.0 0.052 13.4 0.0 1.7 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_10 PF12846.2 gi|57641891|ref|YP_184369.1| - 0.019 14.3 0.5 0.03 13.7 0.3 1.2 1 0 0 1 1 1 0 AAA-like domain ArgK PF03308.11 gi|57641891|ref|YP_184369.1| - 0.035 12.8 2.1 0.078 11.7 1.4 1.6 1 1 0 1 1 1 0 ArgK protein APS_kinase PF01583.15 gi|57641891|ref|YP_184369.1| - 0.038 13.6 0.3 0.44 10.1 0.0 2.1 2 0 0 2 2 2 0 Adenylylsulphate kinase MipZ PF09140.6 gi|57641891|ref|YP_184369.1| - 0.087 11.8 0.1 0.27 10.2 0.1 1.7 1 1 0 1 1 1 0 ATPase MipZ UbiA PF01040.13 gi|57641892|ref|YP_184370.1| - 8.5e-45 152.9 22.9 1.1e-44 152.6 15.9 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family Nrf1_DNA-bind PF10491.4 gi|57641893|ref|YP_184371.1| - 0.0018 17.4 0.1 0.0024 17.0 0.1 1.1 1 0 0 1 1 1 1 NLS-binding and DNA-binding and dimerisation domains of Nrf1 tRNA_anti-codon PF01336.20 gi|57641894|ref|YP_184372.1| - 2.9e-09 36.6 2.4 6.9e-09 35.4 1.7 1.6 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain RPA_C PF08784.6 gi|57641894|ref|YP_184372.1| - 0.018 15.4 0.0 0.028 14.8 0.0 1.4 1 0 0 1 1 1 0 Replication protein A C terminal HTH_12 PF08461.5 gi|57641894|ref|YP_184372.1| - 0.023 14.4 0.2 0.061 13.0 0.2 1.7 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain Acetyltransf_11 PF13720.1 gi|57641894|ref|YP_184372.1| - 0.072 13.3 0.5 0.18 12.0 0.3 1.7 1 0 0 1 1 1 0 Udp N-acetylglucosamine O-acyltransferase; Domain 2 DUF2508 PF10704.4 gi|57641894|ref|YP_184372.1| - 4.5 7.5 10.0 1.2 9.3 2.1 2.8 2 1 0 3 3 3 0 Protein of unknown function (DUF2508) BOF PF04076.8 gi|57641895|ref|YP_184373.1| - 0.0016 18.2 1.1 0.0037 17.0 0.7 1.6 1 1 0 1 1 1 1 Bacterial OB fold (BOF) protein Stn1 PF10451.4 gi|57641895|ref|YP_184373.1| - 0.0042 15.9 0.1 0.0055 15.5 0.1 1.1 1 0 0 1 1 1 1 Telomere regulation protein Stn1 Rep_fac-A_3 PF08661.6 gi|57641895|ref|YP_184373.1| - 0.0061 16.4 0.1 0.0084 16.0 0.0 1.1 1 0 0 1 1 1 1 Replication factor A protein 3 tRNA_anti-codon PF01336.20 gi|57641895|ref|YP_184373.1| - 0.032 14.0 2.2 0.14 12.0 1.4 2.1 1 1 0 1 1 1 0 OB-fold nucleic acid binding domain Rep_fac-A_C PF08646.5 gi|57641896|ref|YP_184374.1| - 5.2e-15 55.4 0.0 1.5e-14 53.9 0.0 1.8 2 0 0 2 2 2 1 Replication factor-A C terminal domain tRNA_anti-codon PF01336.20 gi|57641896|ref|YP_184374.1| - 1.2e-13 50.7 0.3 7.4e-11 41.7 0.1 2.7 2 0 0 2 2 2 2 OB-fold nucleic acid binding domain RHH_1 PF01402.16 gi|57641896|ref|YP_184374.1| - 0.008 16.0 4.2 0.61 10.0 0.1 3.8 2 1 1 3 3 3 2 Ribbon-helix-helix protein, copG family DUF2240 PF09999.4 gi|57641896|ref|YP_184374.1| - 0.0092 15.4 0.4 0.017 14.5 0.3 1.4 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2240) VIT1 PF01988.14 gi|57641896|ref|YP_184374.1| - 0.06 12.8 0.1 0.11 11.9 0.1 1.3 1 0 0 1 1 1 0 VIT family Cation_ATPase_N PF00690.21 gi|57641896|ref|YP_184374.1| - 0.13 11.6 0.2 11 5.5 0.0 2.4 2 0 0 2 2 2 0 Cation transporter/ATPase, N-terminus DUF148 PF02520.12 gi|57641896|ref|YP_184374.1| - 0.17 11.6 0.0 0.33 10.7 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function DUF148 DUF387 PF04079.11 gi|57641897|ref|YP_184375.1| - 2.1e-36 124.7 3.1 2.8e-36 124.2 1.4 1.6 1 1 1 2 2 2 1 Putative transcriptional regulators (Ypuh-like) TrmB PF01978.14 gi|57641897|ref|YP_184375.1| - 0.0011 18.6 2.0 0.0059 16.2 0.0 2.7 2 1 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.15 gi|57641897|ref|YP_184375.1| - 0.011 15.3 0.1 0.45 10.2 0.0 2.6 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family HTH_27 PF13463.1 gi|57641897|ref|YP_184375.1| - 0.013 15.7 0.4 2.8 8.3 0.0 2.5 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_24 PF13412.1 gi|57641897|ref|YP_184375.1| - 0.017 14.4 0.2 2.7 7.4 0.0 2.6 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding Fe_dep_repress PF01325.14 gi|57641897|ref|YP_184375.1| - 0.025 14.5 0.3 0.16 11.9 0.0 2.2 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain HTH_20 PF12840.2 gi|57641897|ref|YP_184375.1| - 0.071 12.9 0.1 2.2 8.1 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain Malic_M PF03949.10 gi|57641898|ref|YP_184376.1| - 4.8e-74 249.1 2.3 6.5e-74 248.7 1.6 1.2 1 0 0 1 1 1 1 Malic enzyme, NAD binding domain malic PF00390.14 gi|57641898|ref|YP_184376.1| - 2.2e-30 105.5 0.6 4.6e-28 98.0 0.4 2.5 1 1 0 1 1 1 1 Malic enzyme, N-terminal domain ELFV_dehydrog PF00208.16 gi|57641898|ref|YP_184376.1| - 3.4e-05 23.5 0.8 6e-05 22.7 0.6 1.4 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Shikimate_DH PF01488.15 gi|57641898|ref|YP_184376.1| - 0.00024 21.2 1.7 0.00038 20.5 0.5 1.8 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase ThiF PF00899.16 gi|57641898|ref|YP_184376.1| - 0.0058 16.4 1.1 0.016 15.0 0.7 2.0 1 1 0 1 1 1 1 ThiF family Pyr_redox_3 PF13738.1 gi|57641898|ref|YP_184376.1| - 0.053 13.5 0.1 0.11 12.4 0.1 1.6 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase NAD_Gly3P_dh_N PF01210.18 gi|57641898|ref|YP_184376.1| - 0.06 13.0 1.4 0.15 11.7 0.9 1.8 1 1 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus FAD_binding_3 PF01494.14 gi|57641898|ref|YP_184376.1| - 0.072 12.1 0.6 0.11 11.5 0.4 1.2 1 0 0 1 1 1 0 FAD binding domain 2-Hacid_dh_C PF02826.14 gi|57641898|ref|YP_184376.1| - 0.082 12.0 4.2 0.032 13.3 0.5 2.1 2 1 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Fumerase_C PF05683.7 gi|57641899|ref|YP_184377.1| - 9.1e-49 165.3 0.0 1.1e-48 165.0 0.0 1.1 1 0 0 1 1 1 1 Fumarase C-terminus Fumerase PF05681.9 gi|57641900|ref|YP_184378.1| - 2.5e-95 318.6 0.0 2.9e-95 318.4 0.0 1.0 1 0 0 1 1 1 1 Fumarate hydratase (Fumerase) 2-Hacid_dh_C PF02826.14 gi|57641901|ref|YP_184379.1| - 3.5e-73 244.5 0.1 8.4e-73 243.2 0.0 1.6 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|57641901|ref|YP_184379.1| - 3.8e-40 136.4 0.3 4.3e-40 136.2 0.2 1.0 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.10 gi|57641901|ref|YP_184379.1| - 7.8e-07 29.0 0.1 2.4e-06 27.4 0.0 1.8 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.12 gi|57641901|ref|YP_184379.1| - 0.00017 21.9 0.8 0.038 14.4 0.0 2.7 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent IlvN PF07991.7 gi|57641901|ref|YP_184379.1| - 0.00049 19.5 0.1 0.0023 17.3 0.0 2.1 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, catalytic domain GFO_IDH_MocA PF01408.17 gi|57641901|ref|YP_184379.1| - 0.0006 20.3 0.3 0.46 11.0 0.0 2.8 3 0 0 3 3 3 1 Oxidoreductase family, NAD-binding Rossmann fold NmrA PF05368.8 gi|57641901|ref|YP_184379.1| - 0.0013 18.0 0.2 0.011 15.0 0.1 2.4 2 1 0 2 2 2 1 NmrA-like family AdoHcyase_NAD PF00670.16 gi|57641901|ref|YP_184379.1| - 0.002 17.9 0.2 0.0051 16.6 0.0 1.7 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 3HCDH_N PF02737.13 gi|57641901|ref|YP_184379.1| - 0.0024 17.5 0.2 0.0056 16.3 0.0 1.8 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TrkA_N PF02254.13 gi|57641901|ref|YP_184379.1| - 0.0026 17.7 1.4 0.33 10.9 0.0 2.8 3 0 0 3 3 2 1 TrkA-N domain ELFV_dehydrog PF00208.16 gi|57641901|ref|YP_184379.1| - 0.0083 15.7 0.1 0.018 14.6 0.1 1.5 1 1 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase XdhC_C PF13478.1 gi|57641901|ref|YP_184379.1| - 0.0088 16.3 0.0 0.04 14.2 0.0 2.0 2 0 0 2 2 2 1 XdhC Rossmann domain AlaDh_PNT_C PF01262.16 gi|57641901|ref|YP_184379.1| - 0.01 15.3 0.2 0.3 10.6 0.1 2.5 1 1 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain UDPG_MGDP_dh_C PF03720.10 gi|57641901|ref|YP_184379.1| - 0.055 13.6 0.1 0.42 10.7 0.0 2.3 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NAD_binding_7 PF13241.1 gi|57641901|ref|YP_184379.1| - 0.062 13.5 0.1 0.31 11.3 0.0 2.1 2 0 0 2 2 2 0 Putative NAD(P)-binding DapB_N PF01113.15 gi|57641901|ref|YP_184379.1| - 0.11 12.4 0.7 6.6 6.6 0.2 2.5 2 1 0 2 2 2 0 Dihydrodipicolinate reductase, N-terminus NAD_Gly3P_dh_N PF01210.18 gi|57641901|ref|YP_184379.1| - 0.21 11.3 1.4 23 4.6 0.0 3.0 4 0 0 4 4 4 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Nitro_FeMo-Co PF02579.12 gi|57641901|ref|YP_184379.1| - 0.38 10.8 4.1 39 4.3 0.0 4.2 4 1 1 5 5 5 0 Dinitrogenase iron-molybdenum cofactor PhoU_div PF01865.11 gi|57641902|ref|YP_184380.1| - 2.4e-57 193.5 6.1 2.7e-57 193.3 4.2 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF47 PhoU PF01895.14 gi|57641902|ref|YP_184380.1| - 0.0001 22.6 6.9 0.0056 17.0 1.8 2.3 2 0 0 2 2 2 2 PhoU domain Rnk_N PF14760.1 gi|57641902|ref|YP_184380.1| - 0.017 15.1 0.6 1.2 9.2 0.0 2.5 2 0 0 2 2 2 0 Rnk N-terminus Syntaxin PF00804.20 gi|57641902|ref|YP_184380.1| - 0.029 14.5 0.4 7.6 6.7 0.0 2.5 2 1 1 3 3 3 0 Syntaxin DUF948 PF06103.6 gi|57641902|ref|YP_184380.1| - 0.17 11.7 3.5 1.2 8.9 1.4 2.8 2 2 0 2 2 2 0 Bacterial protein of unknown function (DUF948) FlaC_arch PF05377.6 gi|57641902|ref|YP_184380.1| - 0.82 9.6 4.7 2.2 8.2 0.1 3.0 2 1 1 3 3 3 0 Flagella accessory protein C (FlaC) zf-HC2 PF13490.1 gi|57641902|ref|YP_184380.1| - 0.85 9.6 3.3 1.8 8.5 0.0 2.9 4 0 0 4 4 4 0 Putative zinc-finger YtxH PF12732.2 gi|57641902|ref|YP_184380.1| - 2.7 8.4 5.5 1.4e+02 2.9 4.2 2.8 1 1 1 2 2 2 0 YtxH-like protein DUF848 PF05852.6 gi|57641902|ref|YP_184380.1| - 7 6.4 7.5 2.1 8.2 1.6 2.5 2 1 1 4 4 4 0 Gammaherpesvirus protein of unknown function (DUF848) ApbA PF02558.11 gi|57641903|ref|YP_184381.1| - 1.1e-39 135.3 0.2 2e-39 134.4 0.0 1.5 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA ApbA_C PF08546.6 gi|57641903|ref|YP_184381.1| - 6.7e-31 106.8 0.0 2.7e-30 104.9 0.0 2.0 3 0 0 3 3 3 1 Ketopantoate reductase PanE/ApbA C terminal NAD_Gly3P_dh_N PF01210.18 gi|57641903|ref|YP_184381.1| - 3.7e-07 29.9 0.0 9.6e-07 28.6 0.0 1.7 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Pyr_redox PF00070.22 gi|57641903|ref|YP_184381.1| - 0.00053 20.3 0.3 0.0055 17.0 0.1 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.13 gi|57641903|ref|YP_184381.1| - 0.0031 17.1 0.0 0.0069 16.0 0.0 1.6 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.9 gi|57641903|ref|YP_184381.1| - 0.0039 16.5 0.0 0.0062 15.9 0.0 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain F420_oxidored PF03807.12 gi|57641903|ref|YP_184381.1| - 0.013 15.9 0.1 0.033 14.5 0.1 1.8 1 1 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent Saccharop_dh PF03435.13 gi|57641903|ref|YP_184381.1| - 0.013 14.4 0.0 0.019 13.9 0.0 1.2 1 0 0 1 1 1 0 Saccharopine dehydrogenase NAD_binding_10 PF13460.1 gi|57641903|ref|YP_184381.1| - 0.061 13.3 0.0 0.085 12.8 0.0 1.3 1 0 0 1 1 1 0 NADH(P)-binding Radical_SAM PF04055.16 gi|57641903|ref|YP_184381.1| - 0.07 13.2 0.0 0.15 12.2 0.0 1.6 1 0 0 1 1 1 0 Radical SAM superfamily FAD_binding_3 PF01494.14 gi|57641903|ref|YP_184381.1| - 0.079 11.9 0.2 0.17 10.9 0.1 1.5 1 0 0 1 1 1 0 FAD binding domain ThiF PF00899.16 gi|57641903|ref|YP_184381.1| - 0.083 12.7 0.3 0.18 11.6 0.2 1.6 1 1 0 1 1 1 0 ThiF family NAD_binding_8 PF13450.1 gi|57641903|ref|YP_184381.1| - 0.094 12.7 0.5 0.21 11.6 0.3 1.6 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain DUF2892 PF11127.3 gi|57641904|ref|YP_184382.1| - 2.3 8.1 8.1 4.9 7.0 1.7 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF2892) SpoU_methylase PF00588.14 gi|57641905|ref|YP_184383.1| - 5.3e-31 107.4 0.0 8.1e-31 106.7 0.0 1.3 1 0 0 1 1 1 1 SpoU rRNA Methylase family CBS PF00571.23 gi|57641905|ref|YP_184383.1| - 0.057 13.2 0.0 0.14 11.9 0.0 1.7 1 0 0 1 1 1 0 CBS domain DUF1938 PF09153.5 gi|57641906|ref|YP_184384.1| - 1e-38 131.0 0.1 1.6e-38 130.4 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1938) DNA_binding_1 PF01035.15 gi|57641906|ref|YP_184384.1| - 8.4e-28 95.9 0.0 1.4e-27 95.2 0.0 1.3 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain TPR_15 PF13429.1 gi|57641907|ref|YP_184385.1| - 9.2e-10 38.0 17.2 3.2e-08 32.9 7.6 3.8 1 1 2 3 3 3 2 Tetratricopeptide repeat TPR_6 PF13174.1 gi|57641907|ref|YP_184385.1| - 8.7e-09 35.2 29.9 0.063 13.7 0.7 6.8 6 1 0 6 6 6 4 Tetratricopeptide repeat TPR_2 PF07719.12 gi|57641907|ref|YP_184385.1| - 6e-08 32.0 48.5 0.00067 19.3 1.6 7.7 4 3 4 8 8 8 5 Tetratricopeptide repeat TPR_12 PF13424.1 gi|57641907|ref|YP_184385.1| - 2.8e-07 30.3 28.0 0.008 16.0 2.2 3.8 2 1 1 3 3 3 3 Tetratricopeptide repeat TPR_8 PF13181.1 gi|57641907|ref|YP_184385.1| - 1.1e-06 27.9 35.3 0.00023 20.7 0.4 6.7 4 1 3 7 7 7 3 Tetratricopeptide repeat TPR_7 PF13176.1 gi|57641907|ref|YP_184385.1| - 2.9e-06 26.6 33.4 0.0063 16.2 0.8 6.4 6 1 0 6 6 5 4 Tetratricopeptide repeat SNAP PF14938.1 gi|57641907|ref|YP_184385.1| - 1e-05 24.8 22.5 1e-05 24.8 15.6 2.5 1 1 1 2 2 2 1 Soluble NSF attachment protein, SNAP TPR_11 PF13414.1 gi|57641907|ref|YP_184385.1| - 2e-05 24.1 34.6 0.011 15.3 1.0 4.8 2 1 1 3 3 3 1 TPR repeat TPR_14 PF13428.1 gi|57641907|ref|YP_184385.1| - 2.3e-05 24.6 23.2 0.92 10.3 1.3 6.2 1 1 4 5 5 5 3 Tetratricopeptide repeat TPR_16 PF13432.1 gi|57641907|ref|YP_184385.1| - 0.00074 20.1 30.8 0.67 10.7 5.3 5.0 2 2 2 4 4 4 3 Tetratricopeptide repeat TPR_1 PF00515.23 gi|57641907|ref|YP_184385.1| - 0.0038 16.7 33.5 0.056 13.0 0.7 6.8 5 2 2 7 7 7 3 Tetratricopeptide repeat TPR_19 PF14559.1 gi|57641907|ref|YP_184385.1| - 0.0073 16.6 23.7 0.13 12.6 1.7 4.1 3 1 0 3 3 3 2 Tetratricopeptide repeat Lzipper-MIP1 PF14389.1 gi|57641907|ref|YP_184385.1| - 0.057 13.5 0.0 0.12 12.5 0.0 1.5 1 0 0 1 1 1 0 Leucine-zipper of ternary complex factor MIP1 DUF4363 PF14276.1 gi|57641907|ref|YP_184385.1| - 0.057 13.1 0.0 0.057 13.1 0.0 3.0 3 1 0 3 3 3 0 Domain of unknown function (DUF4363) PDR_CDR PF06422.7 gi|57641907|ref|YP_184385.1| - 0.072 12.7 0.2 0.27 10.9 0.1 2.0 1 0 0 1 1 1 0 CDR ABC transporter TPR_9 PF13371.1 gi|57641907|ref|YP_184385.1| - 0.26 11.1 8.6 0.32 10.8 0.8 3.8 2 2 2 4 4 4 0 Tetratricopeptide repeat Clathrin PF00637.15 gi|57641907|ref|YP_184385.1| - 0.33 10.5 10.1 0.28 10.8 0.4 3.6 1 1 2 3 3 3 0 Region in Clathrin and VPS TPR_17 PF13431.1 gi|57641907|ref|YP_184385.1| - 0.94 9.8 9.6 20 5.6 0.1 4.7 5 1 0 5 5 4 0 Tetratricopeptide repeat DUF3366 PF11846.3 gi|57641907|ref|YP_184385.1| - 1.6 8.5 10.0 1.1 9.0 0.2 3.3 1 1 2 3 3 3 0 Domain of unknown function (DUF3366) TPR_4 PF07721.9 gi|57641907|ref|YP_184385.1| - 2.2 8.9 6.6 15 6.3 0.1 4.3 4 0 0 4 4 4 0 Tetratricopeptide repeat NAC PF01849.13 gi|57641908|ref|YP_184386.1| - 4e-14 51.8 5.7 7.4e-14 51.0 2.8 1.9 1 1 1 2 2 2 1 NAC domain UBA PF00627.26 gi|57641908|ref|YP_184386.1| - 9.7e-09 34.8 2.8 1e-08 34.7 0.1 2.1 2 0 0 2 2 2 1 UBA/TS-N domain CUE PF02845.11 gi|57641908|ref|YP_184386.1| - 0.017 14.6 0.1 0.14 11.6 0.0 2.1 2 0 0 2 2 2 0 CUE domain UBA_4 PF14555.1 gi|57641908|ref|YP_184386.1| - 0.023 14.2 0.0 0.042 13.3 0.0 1.4 1 1 0 1 1 1 0 UBA-like domain Clp_N PF02861.15 gi|57641908|ref|YP_184386.1| - 0.024 14.5 0.3 0.069 13.0 0.0 1.9 2 1 0 2 2 2 0 Clp amino terminal domain B5 PF03484.10 gi|57641908|ref|YP_184386.1| - 0.048 13.4 0.2 1.5 8.7 0.2 2.2 1 1 0 1 1 1 0 tRNA synthetase B5 domain Acyl_transf_1 PF00698.16 gi|57641908|ref|YP_184386.1| - 0.052 12.8 0.1 0.056 12.7 0.1 1.0 1 0 0 1 1 1 0 Acyl transferase domain Death PF00531.17 gi|57641908|ref|YP_184386.1| - 0.062 13.0 0.1 1.3 8.8 0.0 2.2 2 0 0 2 2 2 0 Death domain DUF211 PF02680.9 gi|57641908|ref|YP_184386.1| - 0.14 11.9 1.7 0.99 9.2 0.7 2.1 1 1 1 2 2 2 0 Uncharacterized ArCR, COG1888 DUF3918 PF13056.1 gi|57641908|ref|YP_184386.1| - 0.52 9.6 3.3 0.79 9.0 2.3 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3918) CMD PF02627.15 gi|57641909|ref|YP_184387.1| - 9.1e-19 67.0 0.4 1.2e-18 66.7 0.3 1.2 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family EAP30 PF04157.11 gi|57641909|ref|YP_184387.1| - 0.12 11.5 0.1 0.19 10.8 0.0 1.4 1 0 0 1 1 1 0 EAP30/Vps36 family HEAT_2 PF13646.1 gi|57641910|ref|YP_184388.1| - 3.1e-26 91.4 11.7 1.2e-06 28.6 0.2 5.7 2 2 5 7 7 7 6 HEAT repeats HEAT PF02985.17 gi|57641910|ref|YP_184388.1| - 2.1e-17 61.5 1.2 0.11 12.6 0.0 7.5 8 0 0 8 8 8 4 HEAT repeat Adaptin_N PF01602.15 gi|57641910|ref|YP_184388.1| - 1.2e-13 50.2 1.6 5.8e-05 21.5 0.0 3.2 2 1 1 3 3 3 3 Adaptin N terminal region HEAT_EZ PF13513.1 gi|57641910|ref|YP_184388.1| - 2.4e-08 34.2 7.2 0.31 11.5 0.0 7.0 4 3 4 8 8 8 2 HEAT-like repeat DUF2435 PF10363.4 gi|57641910|ref|YP_184388.1| - 8.2e-08 32.0 3.1 0.00061 19.6 0.1 4.2 4 1 1 5 5 4 1 Protein of unknown function (DUF2435) Cnd1 PF12717.2 gi|57641910|ref|YP_184388.1| - 6.4e-07 29.3 4.9 0.024 14.5 0.2 4.6 3 1 0 3 3 3 2 non-SMC mitotic condensation complex subunit 1 V-ATPase_H_N PF03224.9 gi|57641910|ref|YP_184388.1| - 1.3e-06 27.7 1.4 0.0076 15.4 0.0 3.8 1 1 3 4 4 4 2 V-ATPase subunit H CLASP_N PF12348.3 gi|57641910|ref|YP_184388.1| - 1.8e-06 27.4 0.0 0.14 11.4 0.0 4.0 4 1 0 4 4 4 1 CLASP N terminal Proteasom_PSMB PF10508.4 gi|57641910|ref|YP_184388.1| - 8.7e-06 24.2 4.1 0.0039 15.5 0.1 4.1 1 1 2 4 4 4 1 Proteasome non-ATPase 26S subunit MOR2-PAG1_C PF14225.1 gi|57641910|ref|YP_184388.1| - 1.9e-05 24.5 0.4 0.00094 19.0 0.1 2.6 2 0 0 2 2 2 1 Cell morphogenesis C-terminal V-ATPase_H_C PF11698.3 gi|57641910|ref|YP_184388.1| - 4.2e-05 23.4 2.1 0.6 10.0 0.0 3.7 3 0 0 3 3 3 1 V-ATPase subunit H Nipped-B_C PF12830.2 gi|57641910|ref|YP_184388.1| - 0.00029 20.5 0.1 0.083 12.5 0.0 3.7 4 1 0 4 4 4 1 Sister chromatid cohesion C-terminus Vac14_Fab1_bd PF12755.2 gi|57641910|ref|YP_184388.1| - 0.00032 21.0 1.2 5.8 7.3 0.0 4.5 4 1 1 5 5 4 0 Vacuolar 14 Fab1-binding region Arm PF00514.18 gi|57641910|ref|YP_184388.1| - 0.00066 19.4 0.1 11 5.9 0.0 5.5 6 0 0 6 6 6 0 Armadillo/beta-catenin-like repeat RIX1 PF08167.7 gi|57641910|ref|YP_184388.1| - 0.00071 19.2 0.3 0.054 13.1 0.0 3.9 2 2 0 2 2 2 1 rRNA processing/ribosome biogenesis PPR_3 PF13812.1 gi|57641910|ref|YP_184388.1| - 0.0014 18.7 0.0 0.18 12.1 0.0 4.1 3 0 0 3 3 3 1 Pentatricopeptide repeat domain Aldo_ket_red PF00248.16 gi|57641910|ref|YP_184388.1| - 0.0018 17.1 0.2 0.28 9.9 0.0 2.3 2 0 0 2 2 2 1 Aldo/keto reductase family B56 PF01603.15 gi|57641910|ref|YP_184388.1| - 0.0035 16.0 0.0 2.7 6.4 0.0 3.5 3 1 0 3 3 3 1 Protein phosphatase 2A regulatory B subunit (B56 family) Cnd3 PF12719.2 gi|57641910|ref|YP_184388.1| - 0.0093 14.9 0.1 0.75 8.7 0.0 3.0 2 2 0 2 2 2 1 Nuclear condensing complex subunits, C-term domain MMS19_N PF14500.1 gi|57641910|ref|YP_184388.1| - 0.011 15.0 0.9 0.8 8.9 0.0 3.4 3 1 0 3 3 3 0 Dos2-interacting transcription regulator of RNA-Pol-II TPR_19 PF14559.1 gi|57641910|ref|YP_184388.1| - 0.014 15.6 0.1 0.12 12.7 0.0 2.7 2 1 0 2 2 1 0 Tetratricopeptide repeat Nup188 PF10487.4 gi|57641910|ref|YP_184388.1| - 0.016 13.1 0.3 0.4 8.5 0.0 2.4 2 0 0 2 2 2 0 Nucleoporin subcomplex protein binding to Pom34 MMS19_C PF12460.3 gi|57641910|ref|YP_184388.1| - 0.026 13.2 0.1 1.3 7.6 0.0 3.2 3 2 1 4 4 4 0 RNAPII transcription regulator C-terminal Xpo1 PF08389.7 gi|57641910|ref|YP_184388.1| - 0.029 14.2 0.0 2.6 7.9 0.0 3.2 3 2 0 3 3 3 0 Exportin 1-like protein SHOCT PF09851.4 gi|57641910|ref|YP_184388.1| - 0.036 13.5 2.9 0.084 12.3 0.1 3.1 2 0 0 2 2 2 0 Short C-terminal domain EH_Signature PF15611.1 gi|57641910|ref|YP_184388.1| - 0.056 12.4 1.5 0.71 8.8 0.0 2.6 3 0 0 3 3 3 0 EH_Signature domain SpoIIAA-like PF11964.3 gi|57641910|ref|YP_184388.1| - 0.057 13.7 0.7 4.9 7.4 0.0 3.9 3 2 1 4 4 4 0 SpoIIAA-like RAI16-like PF10257.4 gi|57641910|ref|YP_184388.1| - 0.6 8.9 3.6 6.1 5.6 0.1 2.9 2 1 1 3 3 3 0 Retinoic acid induced 16-like protein MMR_HSR1 PF01926.18 gi|57641911|ref|YP_184389.1| - 1.4e-21 76.6 0.1 7.4e-21 74.2 0.0 2.2 3 0 0 3 3 2 1 50S ribosome-binding GTPase GTP-bdg_N PF13167.1 gi|57641911|ref|YP_184389.1| - 6.4e-14 51.8 0.0 3.7e-13 49.4 0.0 2.2 2 0 0 2 2 2 1 GTP-binding GTPase N-terminal FeoB_N PF02421.13 gi|57641911|ref|YP_184389.1| - 2.1e-10 40.1 0.0 4.7e-10 38.9 0.0 1.6 1 0 0 1 1 1 1 Ferrous iron transport protein B GTP_EFTU PF00009.22 gi|57641911|ref|YP_184389.1| - 3.4e-08 33.1 0.1 1.3e-06 27.9 0.0 2.3 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain Dynamin_N PF00350.18 gi|57641911|ref|YP_184389.1| - 3.6e-05 23.6 0.0 0.0045 16.8 0.0 2.6 2 1 1 3 3 2 1 Dynamin family Miro PF08477.8 gi|57641911|ref|YP_184389.1| - 7.4e-05 23.2 0.0 0.00017 22.0 0.0 1.6 1 0 0 1 1 1 1 Miro-like protein Arf PF00025.16 gi|57641911|ref|YP_184389.1| - 0.00043 19.5 1.4 0.0041 16.3 1.0 2.4 1 1 0 1 1 1 1 ADP-ribosylation factor family PduV-EutP PF10662.4 gi|57641911|ref|YP_184389.1| - 0.00066 19.1 0.1 1.4 8.3 0.0 2.6 2 0 0 2 2 2 2 Ethanolamine utilisation - propanediol utilisation ATP_bind_1 PF03029.12 gi|57641911|ref|YP_184389.1| - 0.0032 17.0 0.1 0.092 12.2 0.0 2.3 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein AAA_14 PF13173.1 gi|57641911|ref|YP_184389.1| - 0.0088 15.9 0.0 0.056 13.3 0.0 2.3 2 0 0 2 2 2 1 AAA domain GBP PF02263.14 gi|57641911|ref|YP_184389.1| - 0.0095 15.0 0.0 0.2 10.7 0.0 2.2 2 0 0 2 2 2 1 Guanylate-binding protein, N-terminal domain cobW PF02492.14 gi|57641911|ref|YP_184389.1| - 0.012 15.0 0.5 5.1 6.4 0.1 2.5 1 1 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain MobB PF03205.9 gi|57641911|ref|YP_184389.1| - 0.023 14.4 0.0 0.059 13.0 0.0 1.7 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_16 PF13191.1 gi|57641911|ref|YP_184389.1| - 0.028 14.4 1.6 0.087 12.8 0.1 2.4 2 1 0 2 2 2 0 AAA ATPase domain DUF258 PF03193.11 gi|57641911|ref|YP_184389.1| - 0.028 13.5 0.0 0.058 12.5 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function, DUF258 ABC_tran PF00005.22 gi|57641911|ref|YP_184389.1| - 0.033 14.5 0.0 0.097 12.9 0.0 1.8 1 0 0 1 1 1 0 ABC transporter AAA_29 PF13555.1 gi|57641911|ref|YP_184389.1| - 0.057 12.9 0.0 0.13 11.8 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_18 PF13238.1 gi|57641911|ref|YP_184389.1| - 0.11 12.8 0.0 0.11 12.8 0.0 3.1 4 0 0 4 4 3 0 AAA domain HSDR_N PF04313.9 gi|57641911|ref|YP_184389.1| - 0.12 12.0 0.6 2.5 7.8 0.4 2.4 1 1 0 1 1 1 0 Type I restriction enzyme R protein N terminus (HSDR_N) AAA_17 PF13207.1 gi|57641911|ref|YP_184389.1| - 0.16 12.8 3.9 0.19 12.5 0.2 2.8 2 2 0 2 2 2 0 AAA domain AAA_23 PF13476.1 gi|57641911|ref|YP_184389.1| - 2.6 8.3 8.9 1.3 9.3 0.1 3.1 2 1 1 3 3 3 0 AAA domain PHO4 PF01384.15 gi|57641912|ref|YP_184390.1| - 2.7e-78 262.8 42.4 3.3e-78 262.6 29.4 1.1 1 0 0 1 1 1 1 Phosphate transporter family POR PF01558.13 gi|57641913|ref|YP_184391.1| - 2.5e-44 151.2 0.6 3e-44 150.9 0.4 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase MAF_flag10 PF01973.13 gi|57641913|ref|YP_184391.1| - 0.035 13.6 0.0 0.05 13.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function DUF115 SMC_hinge PF06470.8 gi|57641913|ref|YP_184391.1| - 0.048 13.6 0.1 0.066 13.1 0.1 1.3 1 0 0 1 1 1 0 SMC proteins Flexible Hinge Domain Fer4 PF00037.22 gi|57641914|ref|YP_184392.1| - 7.9e-15 53.7 18.2 2.3e-08 33.2 3.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|57641914|ref|YP_184392.1| - 3.4e-11 43.3 23.6 5.6e-08 33.0 8.3 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|57641914|ref|YP_184392.1| - 1.4e-10 40.8 8.6 2e-10 40.3 6.0 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|57641914|ref|YP_184392.1| - 4.2e-10 39.0 17.0 1.6e-06 27.6 2.9 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|57641914|ref|YP_184392.1| - 9.6e-10 38.1 25.8 9.6e-07 28.5 10.0 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|57641914|ref|YP_184392.1| - 1.6e-08 33.9 13.8 0.00039 20.1 2.2 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|57641914|ref|YP_184392.1| - 7.1e-08 32.6 23.1 2e-06 27.9 9.2 1.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|57641914|ref|YP_184392.1| - 2.4e-07 31.3 12.7 6e-05 23.7 3.1 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_15 PF13459.1 gi|57641914|ref|YP_184392.1| - 4.1e-06 27.2 7.4 0.0026 18.2 1.0 2.4 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|57641914|ref|YP_184392.1| - 6.5e-05 23.2 4.6 0.12 12.7 0.0 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|57641914|ref|YP_184392.1| - 9.7e-05 22.1 6.5 0.00014 21.7 4.5 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|57641914|ref|YP_184392.1| - 0.00041 20.6 11.4 0.0071 16.7 0.6 2.6 2 1 1 3 3 3 2 4Fe-4S single cluster domain Fer4_8 PF13183.1 gi|57641914|ref|YP_184392.1| - 0.0023 17.9 12.5 0.076 13.0 2.1 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|57641914|ref|YP_184392.1| - 0.0072 16.5 13.5 0.12 12.8 2.5 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|57641914|ref|YP_184392.1| - 0.02 15.2 11.6 0.24 11.7 1.6 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|57641914|ref|YP_184392.1| - 0.15 12.6 5.8 0.15 12.6 4.0 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain POR_N PF01855.14 gi|57641915|ref|YP_184393.1| - 1.3e-77 260.3 2.8 1.8e-77 259.9 2.0 1.2 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Transketolase_C PF02780.15 gi|57641915|ref|YP_184393.1| - 7.3e-06 25.9 0.0 1.9e-05 24.6 0.0 1.7 1 0 0 1 1 1 1 Transketolase, C-terminal domain Phosphonate-bd PF12974.2 gi|57641915|ref|YP_184393.1| - 0.0024 17.2 0.2 0.0073 15.7 0.0 2.0 2 0 0 2 2 2 1 ABC transporter, phosphonate, periplasmic substrate-binding protein TPP_enzyme_N PF02776.13 gi|57641915|ref|YP_184393.1| - 0.03 13.8 5.1 0.071 12.5 3.6 1.7 1 1 0 1 1 1 0 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Syntaxin_2 PF14523.1 gi|57641915|ref|YP_184393.1| - 0.12 12.4 0.0 0.24 11.4 0.0 1.4 1 0 0 1 1 1 0 Syntaxin-like protein TPP_enzyme_C PF02775.16 gi|57641916|ref|YP_184394.1| - 2.7e-19 69.2 0.0 4.1e-19 68.6 0.0 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Fer4 PF00037.22 gi|57641917|ref|YP_184395.1| - 4.9e-15 54.4 16.1 1.6e-08 33.7 4.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|57641917|ref|YP_184395.1| - 3.2e-13 48.8 15.1 1.1e-06 28.2 1.9 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|57641917|ref|YP_184395.1| - 6e-11 42.0 5.3 9.6e-11 41.3 3.7 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|57641917|ref|YP_184395.1| - 7e-10 39.1 9.2 1.1e-09 38.4 6.4 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|57641917|ref|YP_184395.1| - 1.2e-09 37.7 21.0 1.9e-07 30.7 7.7 1.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|57641917|ref|YP_184395.1| - 1.9e-09 36.8 11.5 0.0001 22.0 1.0 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|57641917|ref|YP_184395.1| - 1.6e-07 31.9 7.6 0.00038 21.1 1.5 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.1 gi|57641917|ref|YP_184395.1| - 4.4e-07 30.0 11.3 7.6e-07 29.3 7.7 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|57641917|ref|YP_184395.1| - 3.6e-05 23.7 12.1 0.0054 16.9 1.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|57641917|ref|YP_184395.1| - 4.5e-05 23.3 10.1 0.037 14.0 8.8 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|57641917|ref|YP_184395.1| - 0.0011 19.2 4.7 0.17 12.3 0.9 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|57641917|ref|YP_184395.1| - 0.0024 17.7 4.2 0.0034 17.2 2.9 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|57641917|ref|YP_184395.1| - 0.0094 16.4 12.6 0.74 10.4 0.5 2.8 1 1 1 2 2 2 2 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|57641917|ref|YP_184395.1| - 0.0095 16.2 12.4 0.28 11.5 1.7 2.2 1 1 3 4 4 4 4 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|57641917|ref|YP_184395.1| - 0.074 13.6 17.4 0.2 12.3 4.6 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_13 PF13370.1 gi|57641917|ref|YP_184395.1| - 0.12 12.7 14.2 0.15 12.4 1.4 2.6 1 1 2 3 3 3 0 4Fe-4S single cluster domain POR_N PF01855.14 gi|57641918|ref|YP_184396.1| - 5.8e-81 271.3 0.1 7.7e-81 270.9 0.1 1.2 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Transketolase_C PF02780.15 gi|57641918|ref|YP_184396.1| - 1.3e-06 28.3 0.2 4.1e-06 26.7 0.0 1.9 2 0 0 2 2 2 1 Transketolase, C-terminal domain TPP_enzyme_C PF02775.16 gi|57641919|ref|YP_184397.1| - 3.6e-26 91.5 0.4 3.6e-26 91.5 0.2 1.8 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DXP_synthase_N PF13292.1 gi|57641919|ref|YP_184397.1| - 0.03 13.2 0.1 0.065 12.1 0.1 1.5 1 0 0 1 1 1 0 1-deoxy-D-xylulose-5-phosphate synthase FtsQ PF03799.10 gi|57641921|ref|YP_184399.1| - 0.018 15.2 0.0 0.12 12.5 0.0 2.2 2 0 0 2 2 2 0 Cell division protein FtsQ YvbH_ext PF11724.3 gi|57641923|ref|YP_184401.1| - 0.016 14.9 0.8 5.1 6.8 0.0 3.6 4 0 0 4 4 4 0 YvbH-like oligomerisation region Pro_3_hydrox_C PF05373.6 gi|57641923|ref|YP_184401.1| - 0.038 14.0 0.7 2.3 8.2 0.0 2.8 3 0 0 3 3 3 0 L-proline 3-hydroxylase, C-terminal Aminotran_5 PF00266.14 gi|57641925|ref|YP_184403.1| - 1.7e-137 458.1 0.0 1.9e-137 457.9 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.16 gi|57641925|ref|YP_184403.1| - 1.2e-06 27.7 0.0 4.9e-05 22.4 0.0 2.0 2 0 0 2 2 2 2 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|57641925|ref|YP_184403.1| - 2.5e-06 26.8 0.0 3.2e-06 26.5 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.12 gi|57641925|ref|YP_184403.1| - 6.8e-05 22.0 0.0 0.00012 21.2 0.0 1.4 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.15 gi|57641925|ref|YP_184403.1| - 0.004 15.4 0.0 0.0065 14.8 0.0 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme TBP PF00352.16 gi|57641926|ref|YP_184404.1| - 0.12 11.7 0.0 0.16 11.3 0.0 1.2 1 0 0 1 1 1 0 Transcription factor TFIID (or TATA-binding protein, TBP) MFS_1 PF07690.11 gi|57641927|ref|YP_184405.1| - 4.6e-36 124.2 70.2 1.7e-29 102.6 26.6 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|57641927|ref|YP_184405.1| - 8.3e-11 41.1 9.1 8.3e-11 41.1 6.3 2.0 2 1 0 2 2 2 1 Sugar (and other) transporter UNC-93 PF05978.11 gi|57641927|ref|YP_184405.1| - 0.0013 18.2 2.6 0.0013 18.2 1.8 2.3 3 0 0 3 3 3 1 Ion channel regulatory protein UNC-93 MFS_2 PF13347.1 gi|57641927|ref|YP_184405.1| - 0.0015 17.0 11.8 0.0015 17.0 8.2 2.7 2 2 0 2 2 2 2 MFS/sugar transport protein OATP PF03137.15 gi|57641927|ref|YP_184405.1| - 0.042 11.9 3.4 0.043 11.8 0.4 2.2 2 0 0 2 2 2 0 Organic Anion Transporter Polypeptide (OATP) family AIRS_C PF02769.17 gi|57641928|ref|YP_184406.1| - 1.3e-27 96.6 0.8 1.9e-27 96.1 0.6 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|57641928|ref|YP_184406.1| - 5.5e-16 58.5 0.1 1.5e-15 57.1 0.1 1.8 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain SurE PF01975.12 gi|57641928|ref|YP_184406.1| - 0.053 12.8 0.0 0.096 11.9 0.0 1.3 1 0 0 1 1 1 0 Survival protein SurE NTP_transf_2 PF01909.18 gi|57641929|ref|YP_184407.1| - 7.6e-15 55.0 0.1 8.6e-15 54.8 0.1 1.1 1 0 0 1 1 1 1 Nucleotidyltransferase domain DNA_pol_B_palm PF14792.1 gi|57641929|ref|YP_184407.1| - 2.9e-05 24.0 0.0 3.2e-05 23.9 0.0 1.1 1 0 0 1 1 1 1 DNA polymerase beta palm DUF294 PF03445.8 gi|57641929|ref|YP_184407.1| - 0.08 12.5 0.0 0.094 12.3 0.0 1.2 1 0 0 1 1 1 0 Putative nucleotidyltransferase DUF294 GrpB PF04229.9 gi|57641929|ref|YP_184407.1| - 0.094 12.4 0.0 0.095 12.4 0.0 1.1 1 0 0 1 1 1 0 GrpB protein PIN PF01850.16 gi|57641930|ref|YP_184408.1| - 1.2e-10 41.7 1.1 3.9e-09 36.8 0.8 2.0 1 1 0 1 1 1 1 PIN domain DUF2404 PF10296.4 gi|57641930|ref|YP_184408.1| - 0.061 13.4 0.1 0.39 10.8 0.0 2.1 2 1 0 2 2 2 0 Putative integral membrane protein conserved region (DUF2404) DUF2497 PF10691.4 gi|57641931|ref|YP_184409.1| - 0.11 12.4 1.0 0.13 12.2 0.1 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2497) ARGLU PF15346.1 gi|57641931|ref|YP_184409.1| - 0.12 12.0 5.1 0.22 11.2 3.5 1.3 1 1 0 1 1 1 0 Arginine and glutamate-rich 1 Sua5_yciO_yrdC PF01300.13 gi|57641932|ref|YP_184410.1| - 2.2e-46 157.3 0.0 3.2e-46 156.8 0.0 1.3 1 0 0 1 1 1 1 Telomere recombination zf-HYPF PF07503.7 gi|57641932|ref|YP_184410.1| - 1.3e-32 110.9 15.5 2.6e-16 58.7 1.7 2.4 2 0 0 2 2 2 2 HypF finger Acylphosphatase PF00708.13 gi|57641932|ref|YP_184410.1| - 1.7e-27 95.3 0.0 7.5e-27 93.2 0.0 2.1 2 0 0 2 2 2 1 Acylphosphatase Peptidase_M22 PF00814.20 gi|57641932|ref|YP_184410.1| - 9.4e-09 35.1 0.6 2e-06 27.5 0.0 2.3 2 0 0 2 2 2 2 Glycoprotease family CmcH_NodU PF02543.10 gi|57641932|ref|YP_184410.1| - 0.0048 16.0 0.0 0.011 14.8 0.0 1.6 1 0 0 1 1 1 1 Carbamoyltransferase BcrAD_BadFG PF01869.15 gi|57641932|ref|YP_184410.1| - 0.024 13.9 0.1 0.064 12.5 0.0 1.7 1 1 0 1 1 1 0 BadF/BadG/BcrA/BcrD ATPase family DUF4379 PF14311.1 gi|57641932|ref|YP_184410.1| - 0.029 14.2 1.3 0.062 13.1 0.9 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4379) TF_Zn_Ribbon PF08271.7 gi|57641932|ref|YP_184410.1| - 0.075 12.3 3.9 1.4 8.3 0.7 2.7 2 0 0 2 2 2 0 TFIIB zinc-binding FYVE PF01363.16 gi|57641932|ref|YP_184410.1| - 0.11 12.3 0.4 17 5.4 0.0 2.4 2 0 0 2 2 2 0 FYVE zinc finger DUF1115 PF06544.7 gi|57641932|ref|YP_184410.1| - 0.21 11.2 0.0 0.42 10.2 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1115) NMD3 PF04981.8 gi|57641932|ref|YP_184410.1| - 0.62 9.1 3.4 1 8.3 0.2 2.4 2 1 0 2 2 2 0 NMD3 family DZR PF12773.2 gi|57641932|ref|YP_184410.1| - 1.7 8.5 5.3 61 3.5 3.7 2.4 1 1 0 1 1 1 0 Double zinc ribbon DUF4264 PF14084.1 gi|57641933|ref|YP_184411.1| - 0.085 12.2 0.0 0.18 11.2 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF4264) Ferritin PF00210.19 gi|57641934|ref|YP_184412.1| - 1e-42 145.2 4.1 1.2e-42 145.0 2.9 1.0 1 0 0 1 1 1 1 Ferritin-like domain Rubrerythrin PF02915.12 gi|57641934|ref|YP_184412.1| - 0.00018 21.8 3.4 0.00032 21.0 2.4 1.5 1 1 0 1 1 1 1 Rubrerythrin HypD PF01924.11 gi|57641935|ref|YP_184413.1| - 2e-142 474.1 0.0 2.3e-142 473.9 0.0 1.0 1 0 0 1 1 1 1 Hydrogenase formation hypA family Ubiq_cyt_C_chap PF03981.7 gi|57641935|ref|YP_184413.1| - 0.018 14.8 0.0 0.033 14.0 0.0 1.4 1 0 0 1 1 1 0 Ubiquinol-cytochrome C chaperone Integrase_Zn PF02022.14 gi|57641935|ref|YP_184413.1| - 0.058 12.8 0.0 0.15 11.4 0.0 1.8 1 0 0 1 1 1 0 Integrase Zinc binding domain Rad50_zn_hook PF04423.9 gi|57641935|ref|YP_184413.1| - 0.26 10.7 1.2 14 5.2 0.0 2.9 3 0 0 3 3 3 0 Rad50 zinc hook motif HupF_HypC PF01455.13 gi|57641936|ref|YP_184414.1| - 1.3e-29 101.9 0.1 1.5e-29 101.7 0.1 1.0 1 0 0 1 1 1 1 HupF/HypC family Cyclase PF04199.8 gi|57641936|ref|YP_184414.1| - 0.037 13.7 0.0 0.039 13.6 0.0 1.1 1 0 0 1 1 1 0 Putative cyclase RuvA_N PF01330.16 gi|57641936|ref|YP_184414.1| - 0.092 12.5 0.0 0.18 11.5 0.0 1.5 1 0 0 1 1 1 0 RuvA N terminal domain DUF3006 PF11213.3 gi|57641936|ref|YP_184414.1| - 0.12 12.1 0.1 0.15 11.8 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3006) NTP_transf_3 PF12804.2 gi|57641937|ref|YP_184415.1| - 1.7e-30 106.2 0.0 2.1e-30 105.9 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.14 gi|57641937|ref|YP_184415.1| - 2.3e-05 24.0 0.0 3.1e-05 23.6 0.0 1.2 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CTP_transf_3 PF02348.14 gi|57641937|ref|YP_184415.1| - 2.6e-05 23.9 0.0 0.0015 18.1 0.0 2.1 2 0 0 2 2 2 1 Cytidylyltransferase NTP_transferase PF00483.18 gi|57641937|ref|YP_184415.1| - 0.025 13.8 0.0 0.045 13.0 0.0 1.4 1 0 0 1 1 1 0 Nucleotidyl transferase EcoEI_R_C PF08463.5 gi|57641938|ref|YP_184416.1| - 0.099 12.4 0.5 0.11 12.3 0.4 1.1 1 0 0 1 1 1 0 EcoEI R protein C-terminal Lip_prot_lig_C PF10437.4 gi|57641938|ref|YP_184416.1| - 0.14 11.8 0.2 0.21 11.2 0.0 1.4 2 0 0 2 2 2 0 Bacterial lipoate protein ligase C-terminus IF2_N PF04760.10 gi|57641938|ref|YP_184416.1| - 0.35 10.5 1.4 0.53 9.9 0.2 2.0 2 1 0 2 2 2 0 Translation initiation factor IF-2, N-terminal region HycI PF01750.13 gi|57641939|ref|YP_184417.1| - 1e-14 54.1 0.1 1.5e-14 53.6 0.0 1.2 1 0 0 1 1 1 1 Hydrogenase maturation protease B12-binding PF02310.14 gi|57641939|ref|YP_184417.1| - 0.11 12.3 0.0 10 5.9 0.0 2.2 2 0 0 2 2 2 0 B12 binding domain PIN_3 PF13470.1 gi|57641940|ref|YP_184418.1| - 1.4e-16 61.2 0.0 1.8e-16 60.8 0.0 1.1 1 0 0 1 1 1 1 PIN domain PIN PF01850.16 gi|57641940|ref|YP_184418.1| - 0.00039 20.7 0.5 0.0016 18.7 0.4 1.8 1 1 0 1 1 1 1 PIN domain MerR-DNA-bind PF09278.6 gi|57641941|ref|YP_184419.1| - 0.061 13.7 0.4 0.12 12.8 0.3 1.6 1 0 0 1 1 1 0 MerR, DNA binding CbiA PF01656.18 gi|57641942|ref|YP_184420.1| - 2.3e-22 79.3 0.0 2.9e-22 79.0 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.4 gi|57641942|ref|YP_184420.1| - 8.7e-21 73.5 0.0 1.4e-20 72.9 0.0 1.3 1 0 0 1 1 1 1 ParA/MinD ATPase like AAA_31 PF13614.1 gi|57641942|ref|YP_184420.1| - 1.5e-08 34.7 0.0 1.3e-06 28.3 0.0 2.4 2 0 0 2 2 2 1 AAA domain ArsA_ATPase PF02374.10 gi|57641942|ref|YP_184420.1| - 1e-07 31.3 3.0 1.1e-05 24.7 0.1 2.6 2 1 0 2 2 2 2 Anion-transporting ATPase MipZ PF09140.6 gi|57641942|ref|YP_184420.1| - 2.2e-06 26.9 0.0 3.5e-06 26.3 0.0 1.4 1 0 0 1 1 1 1 ATPase MipZ AAA_26 PF13500.1 gi|57641942|ref|YP_184420.1| - 4.4e-06 26.4 0.6 0.011 15.3 0.0 2.1 2 0 0 2 2 2 2 AAA domain Fer4_NifH PF00142.13 gi|57641942|ref|YP_184420.1| - 0.0003 20.0 0.0 0.029 13.5 0.0 2.2 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family HAS-barrel PF09378.5 gi|57641942|ref|YP_184420.1| - 0.0021 17.9 0.0 0.0044 16.8 0.0 1.5 1 0 0 1 1 1 1 HAS barrel domain MobB PF03205.9 gi|57641942|ref|YP_184420.1| - 0.0024 17.5 0.5 0.12 12.1 0.1 2.3 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B ArgK PF03308.11 gi|57641942|ref|YP_184420.1| - 0.039 12.7 0.7 0.11 11.2 0.1 1.8 2 0 0 2 2 2 0 ArgK protein AAA_30 PF13604.1 gi|57641942|ref|YP_184420.1| - 0.092 12.3 0.1 1.7 8.2 0.0 2.1 2 0 0 2 2 2 0 AAA domain SIS_2 PF13580.1 gi|57641942|ref|YP_184420.1| - 0.1 12.3 0.0 0.17 11.6 0.0 1.3 1 0 0 1 1 1 0 SIS domain HypA PF01155.14 gi|57641943|ref|YP_184421.1| - 2.8e-30 104.2 0.4 3.2e-30 104.1 0.3 1.0 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family PhnA_Zn_Ribbon PF08274.7 gi|57641943|ref|YP_184421.1| - 0.0061 16.3 1.3 1.3 8.8 0.1 2.4 2 0 0 2 2 2 1 PhnA Zinc-Ribbon Zn_Tnp_IS1595 PF12760.2 gi|57641943|ref|YP_184421.1| - 0.01 15.6 0.3 1.1 9.1 0.0 2.2 2 0 0 2 2 2 0 Transposase zinc-ribbon domain TFIIS_C PF01096.13 gi|57641943|ref|YP_184421.1| - 0.018 14.6 3.8 1.1 8.9 0.7 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-ZPR1 PF03367.8 gi|57641943|ref|YP_184421.1| - 0.028 13.5 2.5 0.068 12.3 0.9 2.1 2 1 1 3 3 3 0 ZPR1 zinc-finger domain DUF2318 PF10080.4 gi|57641943|ref|YP_184421.1| - 0.038 13.7 0.1 0.58 9.9 0.0 2.2 2 0 0 2 2 2 0 Predicted membrane protein (DUF2318) zf-ISL3 PF14690.1 gi|57641943|ref|YP_184421.1| - 0.046 13.7 0.7 0.57 10.2 0.1 2.2 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DUF2082 PF09855.4 gi|57641943|ref|YP_184421.1| - 0.053 13.3 0.4 1.2 9.0 0.0 2.3 2 0 0 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) RNA_POL_M_15KD PF02150.11 gi|57641943|ref|YP_184421.1| - 0.057 13.1 2.4 2 8.1 0.3 2.2 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit Mut7-C PF01927.11 gi|57641943|ref|YP_184421.1| - 0.068 13.1 0.4 0.086 12.8 0.2 1.3 1 1 0 1 1 1 0 Mut7-C RNAse domain Trm112p PF03966.11 gi|57641943|ref|YP_184421.1| - 0.073 13.4 0.0 8.4 6.8 0.0 2.2 2 0 0 2 2 2 0 Trm112p-like protein zinc_ribbon_2 PF13240.1 gi|57641943|ref|YP_184421.1| - 0.088 12.3 2.6 2 8.0 0.1 2.5 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|57641943|ref|YP_184421.1| - 0.094 12.3 1.0 3.3 7.3 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain UPF0547 PF10571.4 gi|57641943|ref|YP_184421.1| - 0.13 11.9 2.2 4.4 7.0 0.1 2.5 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zinc_ribbon_4 PF13717.1 gi|57641943|ref|YP_184421.1| - 0.27 10.9 2.0 4.4 7.0 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|57641943|ref|YP_184421.1| - 0.28 11.1 4.4 0.65 10.0 0.1 2.3 1 1 1 2 2 2 0 Zinc ribbon domain Lar_restr_allev PF14354.1 gi|57641943|ref|YP_184421.1| - 0.45 10.8 2.6 9.2 6.6 0.2 2.3 1 1 1 2 2 2 0 Restriction alleviation protein Lar DNA_ligase_ZBD PF03119.11 gi|57641943|ref|YP_184421.1| - 4.4 7.0 7.1 11 5.8 1.2 2.5 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Cation_efflux PF01545.16 gi|57641944|ref|YP_184422.1| - 6e-77 258.5 4.6 6.7e-77 258.3 3.2 1.0 1 0 0 1 1 1 1 Cation efflux family Nitro_FeMo-Co PF02579.12 gi|57641945|ref|YP_184423.1| - 0.0055 16.7 0.0 0.0058 16.6 0.0 1.1 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor Nitro_FeMo-Co PF02579.12 gi|57641946|ref|YP_184424.1| - 4.6e-06 26.6 0.0 4.6e-06 26.6 0.0 1.0 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor Fer4_21 PF14697.1 gi|57641947|ref|YP_184425.1| - 1.1e-06 28.4 8.5 1.5e-06 27.9 5.9 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|57641947|ref|YP_184425.1| - 3.8e-05 23.9 10.0 0.0013 19.0 7.8 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|57641947|ref|YP_184425.1| - 0.00019 20.9 15.0 0.033 13.8 0.9 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|57641947|ref|YP_184425.1| - 0.0013 18.9 12.2 0.0024 18.0 8.4 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain DUF4451 PF14616.1 gi|57641947|ref|YP_184425.1| - 0.027 14.2 0.2 0.027 14.2 0.1 1.7 1 1 1 2 2 2 0 Domain of unknown function (DUF4451) Fer4_6 PF12837.2 gi|57641947|ref|YP_184425.1| - 0.046 13.6 1.5 0.046 13.6 1.0 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_10 PF13237.1 gi|57641947|ref|YP_184425.1| - 0.047 13.4 12.1 0.037 13.8 6.8 1.9 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|57641947|ref|YP_184425.1| - 0.087 12.7 14.5 9.5e+02 0.0 10.1 2.5 1 1 0 1 1 1 0 4Fe-4S binding domain Fer4_16 PF13484.1 gi|57641947|ref|YP_184425.1| - 0.36 11.6 11.7 0.41 11.4 2.4 2.3 1 1 2 3 3 3 0 4Fe-4S double cluster binding domain Fer4_17 PF13534.1 gi|57641947|ref|YP_184425.1| - 0.81 10.0 9.5 5.3 7.4 0.8 2.2 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|57641947|ref|YP_184425.1| - 9.5 6.7 11.5 13 6.2 0.4 2.3 2 0 0 2 2 2 0 4Fe-4S dicluster domain Mucin PF01456.12 gi|57641948|ref|YP_184426.1| - 0.12 12.1 15.8 0.21 11.3 10.9 1.3 1 0 0 1 1 1 0 Mucin-like glycoprotein TauE PF01925.14 gi|57641949|ref|YP_184427.1| - 2.5e-41 141.7 32.2 2.9e-41 141.5 22.3 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE SLAC1 PF03595.12 gi|57641950|ref|YP_184428.1| - 2.8e-78 262.8 50.0 3.1e-78 262.7 34.6 1.0 1 0 0 1 1 1 1 Voltage-dependent anion channel UPF0242 PF06785.6 gi|57641950|ref|YP_184428.1| - 0.42 9.2 1.1 0.76 8.3 0.8 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) Nitro_FeMo-Co PF02579.12 gi|57641951|ref|YP_184429.1| - 4.1e-23 81.2 0.8 4.8e-23 81.0 0.1 1.4 2 0 0 2 2 2 1 Dinitrogenase iron-molybdenum cofactor OsmC PF02566.14 gi|57641952|ref|YP_184430.1| - 5.3e-20 71.4 0.0 8.4e-20 70.8 0.0 1.3 1 0 0 1 1 1 1 OsmC-like protein Red1 PF07964.6 gi|57641952|ref|YP_184430.1| - 0.053 11.6 0.5 0.067 11.3 0.3 1.0 1 0 0 1 1 1 0 Rec10 / Red1 Peripla_BP_2 PF01497.13 gi|57641953|ref|YP_184431.1| - 3.6e-25 88.4 0.0 6.6e-25 87.6 0.0 1.4 2 0 0 2 2 2 1 Periplasmic binding protein HHH_5 PF14520.1 gi|57641953|ref|YP_184431.1| - 0.09 12.9 0.1 0.34 11.0 0.0 2.1 1 1 0 1 1 1 0 Helix-hairpin-helix domain Hc1 PF07432.8 gi|57641953|ref|YP_184431.1| - 0.18 11.9 0.0 0.32 11.1 0.0 1.3 1 0 0 1 1 1 0 Histone H1-like protein Hc1 FecCD PF01032.13 gi|57641954|ref|YP_184432.1| - 1.6e-97 326.1 34.5 2e-97 325.8 23.9 1.0 1 0 0 1 1 1 1 FecCD transport family ABC-3 PF00950.12 gi|57641954|ref|YP_184432.1| - 0.00018 20.8 21.2 0.00032 20.0 14.7 1.4 1 0 0 1 1 1 1 ABC 3 transport family ABC_tran PF00005.22 gi|57641955|ref|YP_184433.1| - 3.2e-28 98.7 0.0 5.5e-28 97.9 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|57641955|ref|YP_184433.1| - 4.1e-11 43.3 0.0 5.9e-06 26.4 0.0 2.1 1 1 0 2 2 2 2 AAA domain AAA_23 PF13476.1 gi|57641955|ref|YP_184433.1| - 2.7e-05 24.6 0.0 3.3e-05 24.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|57641955|ref|YP_184433.1| - 4.3e-05 22.8 0.2 0.019 14.2 0.1 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|57641955|ref|YP_184433.1| - 7.5e-05 22.1 0.0 0.00013 21.3 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_10 PF12846.2 gi|57641955|ref|YP_184433.1| - 0.0002 20.8 0.0 0.00055 19.4 0.0 1.6 1 1 1 2 2 2 1 AAA-like domain AAA_16 PF13191.1 gi|57641955|ref|YP_184433.1| - 0.00066 19.7 0.0 0.0012 18.8 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_15 PF13175.1 gi|57641955|ref|YP_184433.1| - 0.00081 18.5 0.2 0.14 11.1 0.1 2.0 2 0 0 2 2 2 1 AAA ATPase domain DUF258 PF03193.11 gi|57641955|ref|YP_184433.1| - 0.0014 17.8 0.0 0.0021 17.2 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_28 PF13521.1 gi|57641955|ref|YP_184433.1| - 0.0095 15.9 0.0 0.033 14.1 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|57641955|ref|YP_184433.1| - 0.012 15.7 0.1 0.078 13.1 0.1 2.0 1 1 0 1 1 1 0 AAA domain SbcCD_C PF13558.1 gi|57641955|ref|YP_184433.1| - 0.013 15.4 0.2 0.21 11.5 0.1 2.4 2 1 0 2 2 1 0 Putative exonuclease SbcCD, C subunit ArgK PF03308.11 gi|57641955|ref|YP_184433.1| - 0.024 13.4 0.0 0.041 12.6 0.0 1.4 1 0 0 1 1 1 0 ArgK protein NTPase_1 PF03266.10 gi|57641955|ref|YP_184433.1| - 0.027 14.2 0.1 0.18 11.4 0.0 2.0 2 0 0 2 2 2 0 NTPase AAA_5 PF07728.9 gi|57641955|ref|YP_184433.1| - 0.03 14.0 0.0 0.41 10.3 0.0 2.3 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_33 PF13671.1 gi|57641955|ref|YP_184433.1| - 0.035 13.9 0.0 0.15 11.9 0.0 2.1 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|57641955|ref|YP_184433.1| - 0.036 13.4 0.0 0.091 12.1 0.0 1.7 2 0 0 2 2 2 0 AAA domain MutS_V PF00488.16 gi|57641955|ref|YP_184433.1| - 0.051 12.9 0.0 0.086 12.2 0.0 1.3 1 0 0 1 1 1 0 MutS domain V Arch_ATPase PF01637.13 gi|57641955|ref|YP_184433.1| - 0.067 12.8 0.1 0.11 12.1 0.1 1.7 1 1 0 1 1 1 0 Archaeal ATPase AAA_17 PF13207.1 gi|57641955|ref|YP_184433.1| - 0.096 13.5 0.0 0.24 12.2 0.0 1.7 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.18 gi|57641955|ref|YP_184433.1| - 0.1 12.5 0.0 0.18 11.7 0.0 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_30 PF13604.1 gi|57641955|ref|YP_184433.1| - 0.11 12.0 0.0 0.19 11.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|57641955|ref|YP_184433.1| - 0.11 12.1 0.0 0.2 11.2 0.0 1.4 1 0 0 1 1 1 0 NACHT domain ParA PF10609.4 gi|57641956|ref|YP_184434.1| - 1.1e-34 118.1 0.3 1.8e-34 117.4 0.2 1.3 1 0 0 1 1 1 1 ParA/MinD ATPase like CbiA PF01656.18 gi|57641956|ref|YP_184434.1| - 7.5e-22 77.6 0.2 1.3e-21 76.9 0.2 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|57641956|ref|YP_184434.1| - 3.2e-08 33.6 0.0 2.2e-07 30.9 0.0 2.0 2 0 0 2 2 2 1 AAA domain MipZ PF09140.6 gi|57641956|ref|YP_184434.1| - 3.5e-07 29.5 0.3 5.5e-06 25.6 0.1 2.1 2 0 0 2 2 2 1 ATPase MipZ Fer4_NifH PF00142.13 gi|57641956|ref|YP_184434.1| - 2.4e-06 26.9 0.7 2e-05 23.9 0.5 2.1 1 1 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ArsA_ATPase PF02374.10 gi|57641956|ref|YP_184434.1| - 7.5e-06 25.2 2.8 6e-05 22.2 0.3 2.4 2 1 0 2 2 2 1 Anion-transporting ATPase AAA_25 PF13481.1 gi|57641956|ref|YP_184434.1| - 7.5e-05 22.2 0.0 0.00013 21.4 0.0 1.5 1 0 0 1 1 1 1 AAA domain APS_kinase PF01583.15 gi|57641956|ref|YP_184434.1| - 0.00018 21.1 0.0 0.00029 20.5 0.0 1.3 1 0 0 1 1 1 1 Adenylylsulphate kinase AAA_19 PF13245.1 gi|57641956|ref|YP_184434.1| - 0.0059 16.3 0.5 0.034 13.8 0.0 2.3 2 1 0 2 2 2 1 Part of AAA domain ArgK PF03308.11 gi|57641956|ref|YP_184434.1| - 0.0075 15.0 0.1 0.019 13.7 0.0 1.7 2 0 0 2 2 2 1 ArgK protein PhnA_Zn_Ribbon PF08274.7 gi|57641956|ref|YP_184434.1| - 0.0082 15.9 0.1 0.012 15.3 0.1 1.2 1 0 0 1 1 1 1 PhnA Zinc-Ribbon DUF258 PF03193.11 gi|57641956|ref|YP_184434.1| - 0.0086 15.2 0.0 0.014 14.6 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 RecA PF00154.16 gi|57641956|ref|YP_184434.1| - 0.0095 15.0 0.0 0.014 14.4 0.0 1.2 1 0 0 1 1 1 1 recA bacterial DNA recombination protein AAA_17 PF13207.1 gi|57641956|ref|YP_184434.1| - 0.012 16.4 0.0 0.061 14.1 0.0 2.0 2 0 0 2 2 2 0 AAA domain MobB PF03205.9 gi|57641956|ref|YP_184434.1| - 0.017 14.8 0.1 0.038 13.6 0.1 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B VirC1 PF07015.6 gi|57641956|ref|YP_184434.1| - 0.024 13.6 0.1 0.041 12.9 0.0 1.3 1 0 0 1 1 1 0 VirC1 protein AAA_10 PF12846.2 gi|57641956|ref|YP_184434.1| - 0.026 13.9 0.1 0.044 13.2 0.1 1.4 1 0 0 1 1 1 0 AAA-like domain zinc_ribbon_2 PF13240.1 gi|57641956|ref|YP_184434.1| - 0.027 13.9 0.4 0.046 13.2 0.3 1.3 1 0 0 1 1 1 0 zinc-ribbon domain AAA_18 PF13238.1 gi|57641956|ref|YP_184434.1| - 0.028 14.7 0.0 0.066 13.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain DHO_dh PF01180.16 gi|57641956|ref|YP_184434.1| - 0.061 12.2 0.0 0.097 11.6 0.0 1.2 1 0 0 1 1 1 0 Dihydroorotate dehydrogenase SRP54 PF00448.17 gi|57641956|ref|YP_184434.1| - 0.077 12.4 0.2 0.17 11.3 0.2 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain DAP3 PF10236.4 gi|57641956|ref|YP_184434.1| - 0.082 11.8 0.1 0.14 11.0 0.1 1.3 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 RNA_helicase PF00910.17 gi|57641956|ref|YP_184434.1| - 0.099 12.8 0.0 0.28 11.3 0.0 1.8 1 0 0 1 1 1 0 RNA helicase NB-ARC PF00931.17 gi|57641956|ref|YP_184434.1| - 0.14 10.9 0.2 0.46 9.3 0.0 1.8 2 0 0 2 2 2 0 NB-ARC domain KTI12 PF08433.5 gi|57641956|ref|YP_184434.1| - 0.16 11.1 0.0 0.27 10.4 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 NVEALA PF14055.1 gi|57641957|ref|YP_184435.1| - 5.1 6.8 6.8 0.36 10.5 0.2 2.5 2 0 0 2 2 2 0 NVEALA protein DUF2110 PF09883.4 gi|57641958|ref|YP_184436.1| - 2.7e-86 288.8 0.2 3.3e-86 288.5 0.2 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2110) TFIIE_alpha PF02002.12 gi|57641959|ref|YP_184437.1| - 1.2e-33 114.7 4.2 1.2e-33 114.7 2.9 1.7 2 0 0 2 2 2 1 TFIIE alpha subunit TF_Zn_Ribbon PF08271.7 gi|57641959|ref|YP_184437.1| - 0.00018 20.7 0.2 0.00051 19.2 0.1 1.8 2 0 0 2 2 2 1 TFIIB zinc-binding HTH_IclR PF09339.5 gi|57641959|ref|YP_184437.1| - 0.001 18.6 0.0 0.0019 17.7 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain PLC-beta_C PF08703.5 gi|57641959|ref|YP_184437.1| - 0.0016 18.1 0.1 0.0016 18.1 0.1 2.5 3 0 0 3 3 3 1 PLC-beta C terminal TrmB PF01978.14 gi|57641959|ref|YP_184437.1| - 0.0021 17.7 0.1 0.0053 16.4 0.1 1.9 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Mnd1 PF03962.10 gi|57641959|ref|YP_184437.1| - 0.0022 17.6 4.4 0.017 14.8 2.6 2.3 1 1 0 1 1 1 1 Mnd1 family GntR PF00392.16 gi|57641959|ref|YP_184437.1| - 0.0041 16.5 1.7 0.048 13.0 0.1 2.5 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family Sigma70_r3 PF04539.11 gi|57641959|ref|YP_184437.1| - 0.0045 16.8 0.2 0.0045 16.8 0.1 2.2 3 1 0 3 3 1 1 Sigma-70 region 3 HTH_5 PF01022.15 gi|57641959|ref|YP_184437.1| - 0.0051 16.4 0.2 0.011 15.3 0.0 1.7 2 0 0 2 2 1 1 Bacterial regulatory protein, arsR family HTH_23 PF13384.1 gi|57641959|ref|YP_184437.1| - 0.008 15.7 0.0 0.016 14.8 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain Rrf2 PF02082.15 gi|57641959|ref|YP_184437.1| - 0.0089 16.1 0.0 0.018 15.1 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator HTH_Crp_2 PF13545.1 gi|57641959|ref|YP_184437.1| - 0.0096 15.6 0.0 0.022 14.5 0.0 1.6 1 1 0 1 1 1 1 Crp-like helix-turn-helix domain UPF0167 PF03691.9 gi|57641959|ref|YP_184437.1| - 0.013 14.9 0.6 0.035 13.5 0.1 1.8 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0167) HTH_24 PF13412.1 gi|57641959|ref|YP_184437.1| - 0.018 14.3 0.0 0.092 12.1 0.0 2.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_9 PF08221.6 gi|57641959|ref|YP_184437.1| - 0.025 14.4 0.0 0.046 13.6 0.0 1.4 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|57641959|ref|YP_184437.1| - 0.04 13.3 0.7 3.3 7.2 0.0 3.0 3 0 0 3 3 3 0 Sigma-70, region 4 Sdh5 PF03937.11 gi|57641959|ref|YP_184437.1| - 0.041 13.5 1.2 0.09 12.4 0.0 2.1 2 1 1 3 3 2 0 Flavinator of succinate dehydrogenase gpW PF02831.10 gi|57641959|ref|YP_184437.1| - 0.048 13.2 0.1 0.17 11.4 0.0 1.9 2 0 0 2 2 2 0 gpW WAC_Acf1_DNA_bd PF10537.4 gi|57641959|ref|YP_184437.1| - 0.048 13.8 1.8 0.23 11.6 0.6 2.4 2 1 0 2 2 1 0 ATP-utilising chromatin assembly and remodelling N-terminal Prefoldin_2 PF01920.15 gi|57641959|ref|YP_184437.1| - 0.072 12.8 0.3 0.072 12.8 0.2 3.1 3 0 0 3 3 3 0 Prefoldin subunit Rad50_zn_hook PF04423.9 gi|57641959|ref|YP_184437.1| - 0.074 12.5 0.3 0.074 12.5 0.2 3.5 3 1 1 4 4 4 0 Rad50 zinc hook motif DUF4094 PF13334.1 gi|57641959|ref|YP_184437.1| - 0.087 13.2 0.7 0.19 12.1 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4094) HTH_DeoR PF08220.7 gi|57641959|ref|YP_184437.1| - 0.099 12.1 0.1 0.27 10.8 0.1 1.8 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_36 PF13730.1 gi|57641959|ref|YP_184437.1| - 0.11 12.6 0.0 0.27 11.3 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain DUF2250 PF10007.4 gi|57641959|ref|YP_184437.1| - 0.48 10.3 0.1 0.48 10.3 0.0 2.5 3 0 0 3 3 3 0 Uncharacterized protein conserved in archaea (DUF2250) CCDC92 PF14916.1 gi|57641959|ref|YP_184437.1| - 1.7 8.2 4.5 0.36 10.4 0.6 1.8 2 0 0 2 2 1 0 Coiled-coil domain of unknown function Pox_A_type_inc PF04508.7 gi|57641959|ref|YP_184437.1| - 10 6.2 12.2 4 7.4 2.4 3.1 2 0 0 2 2 2 0 Viral A-type inclusion protein repeat Flag1_repress PF03614.8 gi|57641960|ref|YP_184438.1| - 0.12 11.9 0.0 0.13 11.7 0.0 1.1 1 0 0 1 1 1 0 Repressor of phase-1 flagellin ABC_tran PF00005.22 gi|57641961|ref|YP_184439.1| - 6.5e-30 104.2 0.0 1.2e-29 103.4 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|57641961|ref|YP_184439.1| - 4e-13 49.9 0.1 4.5e-11 43.2 0.1 2.2 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|57641961|ref|YP_184439.1| - 0.00016 21.0 0.1 0.00042 19.7 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|57641961|ref|YP_184439.1| - 0.0002 20.5 0.0 0.011 14.7 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain DUF4162 PF13732.1 gi|57641961|ref|YP_184439.1| - 0.00025 21.4 0.1 0.00092 19.6 0.1 1.9 1 1 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_23 PF13476.1 gi|57641961|ref|YP_184439.1| - 0.0004 20.7 0.5 0.0013 19.1 0.2 1.5 1 1 0 1 1 1 1 AAA domain SRP54 PF00448.17 gi|57641961|ref|YP_184439.1| - 0.00073 19.0 0.0 0.0039 16.6 0.0 2.0 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain AAA_30 PF13604.1 gi|57641961|ref|YP_184439.1| - 0.01 15.4 0.0 0.064 12.8 0.0 2.2 3 0 0 3 3 3 0 AAA domain NTPase_1 PF03266.10 gi|57641961|ref|YP_184439.1| - 0.026 14.2 1.6 0.49 10.0 0.1 2.7 2 1 0 2 2 2 0 NTPase AAA PF00004.24 gi|57641961|ref|YP_184439.1| - 0.028 14.6 0.4 0.21 11.7 0.3 2.3 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.1 gi|57641961|ref|YP_184439.1| - 0.03 14.2 0.0 0.082 12.7 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.1 gi|57641961|ref|YP_184439.1| - 0.07 13.1 0.1 0.12 12.3 0.1 1.7 1 1 0 1 1 1 0 AAA ATPase domain Zeta_toxin PF06414.7 gi|57641961|ref|YP_184439.1| - 0.093 11.8 0.0 0.24 10.4 0.0 1.7 2 0 0 2 2 2 0 Zeta toxin AAA_22 PF13401.1 gi|57641961|ref|YP_184439.1| - 0.1 12.7 0.3 0.3 11.2 0.2 2.0 1 1 0 1 1 1 0 AAA domain ArgK PF03308.11 gi|57641961|ref|YP_184439.1| - 0.1 11.3 0.1 0.17 10.6 0.1 1.3 1 0 0 1 1 1 0 ArgK protein AAA_14 PF13173.1 gi|57641961|ref|YP_184439.1| - 0.12 12.2 0.1 2.9 7.7 0.1 2.5 1 1 0 1 1 1 0 AAA domain Rad17 PF03215.10 gi|57641961|ref|YP_184439.1| - 0.13 10.9 0.0 0.2 10.3 0.0 1.2 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA_19 PF13245.1 gi|57641961|ref|YP_184439.1| - 0.14 11.9 0.0 0.43 10.3 0.0 1.8 1 0 0 1 1 1 0 Part of AAA domain AAA_17 PF13207.1 gi|57641961|ref|YP_184439.1| - 0.2 12.4 4.1 1.6 9.5 2.4 2.4 1 1 1 2 2 2 0 AAA domain ABC2_membrane PF01061.19 gi|57641962|ref|YP_184440.1| - 2e-16 59.8 29.6 2e-16 59.8 20.5 2.3 2 1 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|57641962|ref|YP_184440.1| - 1.1e-09 37.8 34.9 1.1e-09 37.8 24.2 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|57641963|ref|YP_184441.1| - 9.1e-17 60.9 15.2 9.1e-17 60.9 10.5 1.8 1 1 1 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|57641963|ref|YP_184441.1| - 2.1e-10 40.1 22.1 2.1e-10 40.1 15.3 1.8 1 1 1 2 2 2 1 ABC-2 family transporter protein Oxidored_q2 PF00420.19 gi|57641963|ref|YP_184441.1| - 4.2 7.0 11.0 0.3 10.7 3.3 2.2 1 1 1 2 2 2 0 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L PfkB PF00294.19 gi|57641964|ref|YP_184442.1| - 2.4e-52 177.9 0.0 3.1e-52 177.5 0.0 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase HTH_11 PF08279.7 gi|57641965|ref|YP_184443.1| - 0.014 15.0 0.0 0.028 14.0 0.0 1.5 1 0 0 1 1 1 0 HTH domain NPFF PF15085.1 gi|57641965|ref|YP_184443.1| - 0.054 13.8 0.3 0.095 13.0 0.2 1.3 1 0 0 1 1 1 0 Neuropeptide FF Acylphosphatase PF00708.13 gi|57641966|ref|YP_184444.1| - 5.5e-30 103.3 0.0 5.9e-30 103.2 0.0 1.0 1 0 0 1 1 1 1 Acylphosphatase CutA1 PF03091.10 gi|57641967|ref|YP_184445.1| - 5.6e-32 109.4 1.0 6.6e-32 109.2 0.7 1.0 1 0 0 1 1 1 1 CutA1 divalent ion tolerance protein DUF99 PF01949.11 gi|57641968|ref|YP_184446.1| - 4.3e-70 234.6 0.1 4.9e-70 234.4 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF99 DnaB_bind PF10410.4 gi|57641968|ref|YP_184446.1| - 0.091 12.7 0.1 0.24 11.4 0.1 1.7 1 0 0 1 1 1 0 DnaB-helicase binding domain of primase Usp PF00582.21 gi|57641969|ref|YP_184447.1| - 1.6e-45 154.7 0.8 3.6e-23 82.3 0.0 2.1 2 0 0 2 2 2 2 Universal stress protein family PTS_IIB PF02302.12 gi|57641969|ref|YP_184447.1| - 0.017 15.5 1.3 2.4 8.6 0.3 2.3 2 0 0 2 2 2 0 PTS system, Lactose/Cellobiose specific IIB subunit DUF3979 PF13141.1 gi|57641969|ref|YP_184447.1| - 0.021 14.6 0.1 0.041 13.7 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3979) PEP-utilizers_C PF02896.13 gi|57641969|ref|YP_184447.1| - 0.059 12.2 1.9 1.2 7.8 0.3 2.1 2 0 0 2 2 2 0 PEP-utilising enzyme, TIM barrel domain Lipoprotein_7 PF01540.11 gi|57641969|ref|YP_184447.1| - 0.075 12.0 2.1 0.14 11.2 0.1 1.9 2 0 0 2 2 2 0 Adhesin lipoprotein IF2_N PF04760.10 gi|57641969|ref|YP_184447.1| - 0.99 9.1 6.2 3.4 7.4 0.1 3.4 4 0 0 4 4 4 0 Translation initiation factor IF-2, N-terminal region GCV_T PF01571.16 gi|57641970|ref|YP_184448.1| - 1.1e-81 273.2 0.0 1.4e-81 272.8 0.0 1.1 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain GCV_T_C PF08669.6 gi|57641970|ref|YP_184448.1| - 8.2e-25 86.6 0.1 1.6e-24 85.7 0.0 1.5 1 0 0 1 1 1 1 Glycine cleavage T-protein C-terminal barrel domain EamA PF00892.15 gi|57641971|ref|YP_184449.1| - 4.3e-33 114.0 25.0 2.1e-19 69.8 2.0 2.3 2 1 1 3 3 3 2 EamA-like transporter family EmrE PF13536.1 gi|57641971|ref|YP_184449.1| - 0.00044 20.4 24.2 0.0011 19.0 2.0 3.3 2 2 0 2 2 2 2 Multidrug resistance efflux transporter Peptidase_S24 PF00717.18 gi|57641972|ref|YP_184450.1| - 1.6e-06 27.6 0.3 3.1e-06 26.7 0.2 1.5 1 0 0 1 1 1 1 Peptidase S24-like DUF531 PF04407.7 gi|57641973|ref|YP_184451.1| - 1.2e-86 288.9 0.0 1.4e-86 288.7 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF531) SPOUT_MTase_2 PF14419.1 gi|57641973|ref|YP_184451.1| - 0.076 12.1 0.0 0.11 11.6 0.0 1.2 1 0 0 1 1 1 0 AF2226-like SPOUT RNA Methylase fused to THUMP TPR_12 PF13424.1 gi|57641974|ref|YP_184452.1| - 4.3e-08 32.9 5.2 3e-05 23.8 0.1 4.5 4 1 1 5 5 5 3 Tetratricopeptide repeat TPR_1 PF00515.23 gi|57641974|ref|YP_184452.1| - 2.7e-07 29.9 4.6 0.0032 17.0 0.2 4.8 4 0 0 4 4 4 1 Tetratricopeptide repeat TPR_2 PF07719.12 gi|57641974|ref|YP_184452.1| - 1.1e-05 24.9 13.1 0.027 14.3 0.2 5.5 6 0 0 6 6 6 1 Tetratricopeptide repeat TPR_14 PF13428.1 gi|57641974|ref|YP_184452.1| - 1.4e-05 25.2 8.4 0.65 10.7 0.1 4.8 4 0 0 4 4 4 2 Tetratricopeptide repeat PPR_3 PF13812.1 gi|57641974|ref|YP_184452.1| - 0.0012 18.9 0.3 14 6.2 0.0 4.4 4 0 0 4 4 4 0 Pentatricopeptide repeat domain TPR_11 PF13414.1 gi|57641974|ref|YP_184452.1| - 0.0015 18.1 7.6 0.075 12.6 0.1 4.4 4 1 0 5 5 5 1 TPR repeat TPR_7 PF13176.1 gi|57641974|ref|YP_184452.1| - 0.004 16.8 4.4 1.6 8.7 0.1 4.3 4 0 0 4 4 4 1 Tetratricopeptide repeat TPR_16 PF13432.1 gi|57641974|ref|YP_184452.1| - 0.009 16.6 10.2 0.23 12.1 0.2 4.4 4 1 0 4 4 4 1 Tetratricopeptide repeat TPR_19 PF14559.1 gi|57641974|ref|YP_184452.1| - 0.011 16.0 11.2 2.8 8.3 0.2 4.5 4 1 0 5 5 5 0 Tetratricopeptide repeat DUF244 PF03112.9 gi|57641974|ref|YP_184452.1| - 0.015 14.8 0.4 0.031 13.8 0.1 1.6 2 0 0 2 2 2 0 Uncharacterized protein family (ORF7) DUF DnaB_bind PF10410.4 gi|57641974|ref|YP_184452.1| - 0.019 14.9 5.7 0.97 9.4 0.3 4.2 4 0 0 4 4 4 0 DnaB-helicase binding domain of primase TPR_8 PF13181.1 gi|57641974|ref|YP_184452.1| - 0.037 13.7 9.8 0.68 9.8 0.2 5.8 6 1 1 7 7 7 0 Tetratricopeptide repeat TPR_6 PF13174.1 gi|57641974|ref|YP_184452.1| - 0.054 13.9 10.0 5.6 7.6 0.1 5.0 5 0 0 5 5 5 0 Tetratricopeptide repeat TPR_10 PF13374.1 gi|57641974|ref|YP_184452.1| - 0.13 12.2 10.9 7.1 6.7 0.0 5.3 5 0 0 5 5 5 0 Tetratricopeptide repeat TPR_17 PF13431.1 gi|57641974|ref|YP_184452.1| - 0.32 11.3 2.2 81 3.8 0.0 3.8 4 0 0 4 4 3 0 Tetratricopeptide repeat PPR PF01535.15 gi|57641974|ref|YP_184452.1| - 0.32 11.0 1.5 11 6.3 0.0 3.8 5 0 0 5 5 4 0 PPR repeat Peptidase_M19 PF01244.16 gi|57641975|ref|YP_184453.1| - 4.9e-95 318.1 0.0 5.4e-95 317.9 0.0 1.0 1 0 0 1 1 1 1 Membrane dipeptidase (Peptidase family M19) KaiC PF06745.8 gi|57641977|ref|YP_184455.1| - 3.6e-52 176.7 0.0 4.2e-52 176.5 0.0 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|57641977|ref|YP_184455.1| - 3e-11 43.0 0.0 4e-11 42.6 0.0 1.2 1 0 0 1 1 1 1 AAA domain GvpD PF07088.6 gi|57641977|ref|YP_184455.1| - 6.6e-08 31.2 0.1 1.7e-05 23.3 0.0 2.1 2 0 0 2 2 2 2 GvpD gas vesicle protein IstB_IS21 PF01695.12 gi|57641977|ref|YP_184455.1| - 0.0002 20.7 0.0 0.00031 20.2 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_10 PF12846.2 gi|57641977|ref|YP_184455.1| - 0.00073 19.0 0.0 0.0012 18.4 0.0 1.4 1 1 0 1 1 1 1 AAA-like domain AAA_18 PF13238.1 gi|57641977|ref|YP_184455.1| - 0.00093 19.5 0.0 0.0017 18.6 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|57641977|ref|YP_184455.1| - 0.0011 18.7 0.0 0.0022 17.6 0.0 1.4 1 0 0 1 1 1 1 Part of AAA domain AAA_17 PF13207.1 gi|57641977|ref|YP_184455.1| - 0.0013 19.5 0.9 0.0051 17.6 0.6 2.2 1 1 0 1 1 1 1 AAA domain Zot PF05707.7 gi|57641977|ref|YP_184455.1| - 0.0015 17.9 0.1 0.0053 16.2 0.0 2.0 1 1 0 1 1 1 1 Zonular occludens toxin (Zot) AAA_14 PF13173.1 gi|57641977|ref|YP_184455.1| - 0.0017 18.2 0.0 0.003 17.4 0.0 1.6 1 0 0 1 1 1 1 AAA domain DnaB_C PF03796.10 gi|57641977|ref|YP_184455.1| - 0.0023 16.8 0.0 0.015 14.2 0.0 1.9 2 0 0 2 2 2 1 DnaB-like helicase C terminal domain RecA PF00154.16 gi|57641977|ref|YP_184455.1| - 0.0049 15.9 0.1 0.0079 15.2 0.0 1.2 1 0 0 1 1 1 1 recA bacterial DNA recombination protein ArgK PF03308.11 gi|57641977|ref|YP_184455.1| - 0.0083 14.9 0.0 0.013 14.2 0.0 1.3 1 0 0 1 1 1 1 ArgK protein T2SE PF00437.15 gi|57641977|ref|YP_184455.1| - 0.011 14.6 0.0 0.018 13.9 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_29 PF13555.1 gi|57641977|ref|YP_184455.1| - 0.015 14.8 0.2 0.031 13.7 0.2 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|57641977|ref|YP_184455.1| - 0.015 15.2 0.0 0.024 14.6 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain DUF2075 PF09848.4 gi|57641977|ref|YP_184455.1| - 0.021 13.7 0.0 0.029 13.3 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_33 PF13671.1 gi|57641977|ref|YP_184455.1| - 0.023 14.5 0.0 0.038 13.8 0.0 1.4 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|57641977|ref|YP_184455.1| - 0.026 14.6 0.1 0.037 14.1 0.1 1.5 1 1 0 1 1 1 0 AAA domain cobW PF02492.14 gi|57641977|ref|YP_184455.1| - 0.034 13.6 0.0 0.051 13.0 0.0 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_24 PF13479.1 gi|57641977|ref|YP_184455.1| - 0.074 12.6 0.3 0.1 12.1 0.2 1.4 1 1 0 1 1 1 0 AAA domain Arch_ATPase PF01637.13 gi|57641977|ref|YP_184455.1| - 0.076 12.7 0.0 0.1 12.3 0.0 1.2 1 0 0 1 1 1 0 Archaeal ATPase NTPase_1 PF03266.10 gi|57641977|ref|YP_184455.1| - 0.083 12.5 0.1 0.14 11.9 0.1 1.3 1 0 0 1 1 1 0 NTPase NACHT PF05729.7 gi|57641977|ref|YP_184455.1| - 0.088 12.4 0.1 0.27 10.8 0.0 1.8 2 0 0 2 2 2 0 NACHT domain AAA_11 PF13086.1 gi|57641977|ref|YP_184455.1| - 0.11 12.0 0.0 0.15 11.6 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_35 PF14516.1 gi|57641977|ref|YP_184455.1| - 0.14 10.8 0.0 0.16 10.5 0.0 1.2 1 0 0 1 1 1 0 AAA-like domain KTI12 PF08433.5 gi|57641977|ref|YP_184455.1| - 0.16 11.1 0.0 0.26 10.4 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 DUF257 PF03192.8 gi|57641978|ref|YP_184456.1| - 3.8e-50 170.1 1.4 4.3e-50 169.9 1.0 1.0 1 0 0 1 1 1 1 Pyrococcus protein of unknown function, DUF257 DUF257 PF03192.8 gi|57641979|ref|YP_184457.1| - 4e-51 173.2 0.0 4.5e-51 173.1 0.0 1.0 1 0 0 1 1 1 1 Pyrococcus protein of unknown function, DUF257 PapG_C PF03628.8 gi|57641979|ref|YP_184457.1| - 0.046 13.3 0.0 0.079 12.6 0.0 1.4 1 0 0 1 1 1 0 PapG chaperone-binding domain Methyltransf_26 PF13659.1 gi|57641980|ref|YP_184458.1| - 3.6e-15 56.0 0.0 7.7e-15 54.9 0.0 1.5 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|57641980|ref|YP_184458.1| - 7.4e-11 42.6 0.0 1.3e-10 41.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|57641980|ref|YP_184458.1| - 2.1e-09 37.1 0.0 2.9e-09 36.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|57641980|ref|YP_184458.1| - 1.1e-08 34.7 0.0 1.6e-08 34.1 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Spermine_synth PF01564.12 gi|57641980|ref|YP_184458.1| - 1.1e-08 34.3 0.0 1.6e-08 33.8 0.0 1.2 1 0 0 1 1 1 1 Spermine/spermidine synthase Methyltransf_11 PF08241.7 gi|57641980|ref|YP_184458.1| - 7.1e-08 32.8 0.0 1.3e-07 31.9 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|57641980|ref|YP_184458.1| - 1.3e-07 31.1 0.0 2.2e-07 30.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_23 PF13489.1 gi|57641980|ref|YP_184458.1| - 1.3e-07 31.4 0.0 2.2e-07 30.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|57641980|ref|YP_184458.1| - 1.8e-07 30.9 0.0 2.8e-07 30.2 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_15 PF09445.5 gi|57641980|ref|YP_184458.1| - 5.3e-07 29.3 0.0 7.8e-07 28.7 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase N6_N4_Mtase PF01555.13 gi|57641980|ref|YP_184458.1| - 8.4e-06 25.4 0.0 0.0014 18.1 0.0 2.7 3 0 0 3 3 3 1 DNA methylase Met_10 PF02475.11 gi|57641980|ref|YP_184458.1| - 2.6e-05 23.9 0.0 4.6e-05 23.0 0.0 1.4 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_30 PF05430.6 gi|57641980|ref|YP_184458.1| - 0.00018 21.2 0.0 0.00041 20.0 0.0 1.6 1 0 0 1 1 1 1 S-adenosyl-L-methionine-dependent methyltransferase Ubie_methyltran PF01209.13 gi|57641980|ref|YP_184458.1| - 0.0002 20.5 0.0 0.00038 19.6 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_24 PF13578.1 gi|57641980|ref|YP_184458.1| - 0.0005 20.8 0.0 0.001 19.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|57641980|ref|YP_184458.1| - 0.00059 20.1 0.0 0.001 19.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_3 PF01596.12 gi|57641980|ref|YP_184458.1| - 0.0019 17.2 0.0 0.0034 16.4 0.0 1.4 1 0 0 1 1 1 1 O-methyltransferase PCMT PF01135.14 gi|57641980|ref|YP_184458.1| - 0.002 17.6 0.0 0.0047 16.4 0.0 1.6 1 1 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) RrnaAD PF00398.15 gi|57641980|ref|YP_184458.1| - 0.018 14.0 0.0 0.025 13.5 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase DUF4213 PF13938.1 gi|57641980|ref|YP_184458.1| - 0.095 12.8 0.0 0.18 11.9 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4213) DUF457 PF04307.9 gi|57641981|ref|YP_184459.1| - 4.4e-13 48.8 5.7 8.8e-10 38.1 1.0 2.2 2 0 0 2 2 2 2 Predicted membrane-bound metal-dependent hydrolase (DUF457) tRNA_anti-codon PF01336.20 gi|57641981|ref|YP_184459.1| - 3.5e-05 23.5 0.7 0.00015 21.5 0.5 2.1 1 1 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA_anti_2 PF13742.1 gi|57641981|ref|YP_184459.1| - 0.012 15.4 0.0 0.072 12.9 0.0 2.0 1 1 0 1 1 1 0 OB-fold nucleic acid binding domain RE_AccI PF09545.5 gi|57641981|ref|YP_184459.1| - 0.037 12.5 0.1 0.057 11.9 0.1 1.2 1 0 0 1 1 1 0 AccI restriction endonuclease HIN PF02760.10 gi|57641981|ref|YP_184459.1| - 0.11 11.8 0.8 0.53 9.6 0.2 2.0 1 1 1 2 2 2 0 HIN-200/IF120x domain TctA PF01970.11 gi|57641982|ref|YP_184460.1| - 2.4e-52 177.7 41.4 2.8e-52 177.5 28.7 1.0 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter TctA family tRNA_anti-codon PF01336.20 gi|57641983|ref|YP_184461.1| - 8.5e-33 112.0 9.1 2.1e-05 24.3 0.0 9.7 10 0 0 10 10 10 7 OB-fold nucleic acid binding domain tRNA_anti-like PF12869.2 gi|57641983|ref|YP_184461.1| - 1.6e-08 34.1 6.4 0.083 12.3 0.2 6.6 5 1 0 5 5 5 3 tRNA_anti-like tRNA_anti_2 PF13742.1 gi|57641983|ref|YP_184461.1| - 4e-06 26.6 0.0 8.4 6.3 0.0 6.1 6 0 0 6 6 6 2 OB-fold nucleic acid binding domain FLgD_tudor PF13861.1 gi|57641983|ref|YP_184461.1| - 0.075 13.0 3.5 25 4.9 0.0 5.1 4 3 1 5 5 5 0 FlgD Tudor-like domain Peptidase_S9 PF00326.16 gi|57641984|ref|YP_184462.1| - 3.7e-53 179.9 0.0 5.3e-53 179.3 0.0 1.2 1 0 0 1 1 1 1 Prolyl oligopeptidase family Peptidase_S15 PF02129.13 gi|57641984|ref|YP_184462.1| - 1.2e-11 44.5 0.0 5.3e-08 32.6 0.0 2.2 1 1 1 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) Abhydrolase_5 PF12695.2 gi|57641984|ref|YP_184462.1| - 6e-11 42.2 0.0 9.7e-11 41.6 0.0 1.3 1 0 0 1 1 1 1 Alpha/beta hydrolase family AXE1 PF05448.7 gi|57641984|ref|YP_184462.1| - 5e-06 25.2 0.1 0.0068 14.9 0.1 3.1 2 1 0 2 2 2 2 Acetyl xylan esterase (AXE1) Abhydrolase_6 PF12697.2 gi|57641984|ref|YP_184462.1| - 0.00013 21.8 0.0 0.0014 18.5 0.0 2.1 1 1 0 1 1 1 1 Alpha/beta hydrolase family DLH PF01738.13 gi|57641984|ref|YP_184462.1| - 0.0023 17.2 0.0 0.0071 15.6 0.0 1.7 1 1 0 1 1 1 1 Dienelactone hydrolase family PD40 PF07676.7 gi|57641984|ref|YP_184462.1| - 0.0029 17.2 0.0 0.012 15.2 0.0 2.1 1 0 0 1 1 1 1 WD40-like Beta Propeller Repeat BAAT_C PF08840.6 gi|57641984|ref|YP_184462.1| - 0.01 15.5 0.0 0.14 11.8 0.0 2.2 1 1 0 1 1 1 0 BAAT / Acyl-CoA thioester hydrolase C terminal DPPIV_N PF00930.16 gi|57641984|ref|YP_184462.1| - 0.061 11.8 0.1 0.32 9.5 0.0 2.0 1 1 1 2 2 2 0 Dipeptidyl peptidase IV (DPP IV) N-terminal region PAF-AH_p_II PF03403.8 gi|57641984|ref|YP_184462.1| - 0.066 11.4 0.0 0.99 7.6 0.0 2.3 2 0 0 2 2 2 0 Platelet-activating factor acetylhydrolase, isoform II Abhydrolase_2 PF02230.11 gi|57641984|ref|YP_184462.1| - 0.079 12.3 0.0 8.5 5.7 0.0 3.0 2 1 0 2 2 2 0 Phospholipase/Carboxylesterase COesterase PF00135.23 gi|57641984|ref|YP_184462.1| - 0.17 10.5 1.2 3.5 6.2 0.2 2.2 2 0 0 2 2 2 0 Carboxylesterase family UbiA PF01040.13 gi|57641985|ref|YP_184463.1| - 0.0029 16.8 3.7 0.0036 16.5 2.6 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family PRA1 PF03208.14 gi|57641985|ref|YP_184463.1| - 0.0034 16.7 0.5 0.0047 16.2 0.3 1.2 1 0 0 1 1 1 1 PRA1 family protein TauE PF01925.14 gi|57641985|ref|YP_184463.1| - 0.015 14.8 1.4 0.018 14.4 1.0 1.1 1 0 0 1 1 1 0 Sulfite exporter TauE/SafE TraX PF05857.6 gi|57641985|ref|YP_184463.1| - 0.02 14.5 0.7 0.022 14.3 0.5 1.1 1 0 0 1 1 1 0 TraX protein DUF3487 PF11990.3 gi|57641985|ref|YP_184463.1| - 0.11 11.9 2.5 1.6 8.1 0.2 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3487) Caps_synth_CapC PF14102.1 gi|57641985|ref|YP_184463.1| - 0.29 11.2 3.8 7.8 6.6 2.6 2.2 1 1 0 1 1 1 0 Capsule biosynthesis CapC TctB PF07331.6 gi|57641985|ref|YP_184463.1| - 0.3 10.7 7.4 2.1 8.0 5.2 1.9 1 1 0 1 1 1 0 Tripartite tricarboxylate transporter TctB family PrgI PF12666.2 gi|57641985|ref|YP_184463.1| - 0.83 9.8 7.8 1.6 8.9 0.4 2.2 2 0 0 2 2 2 0 PrgI family protein RseC_MucC PF04246.7 gi|57641985|ref|YP_184463.1| - 2 7.9 4.6 6.1 6.4 0.2 2.0 1 1 1 2 2 2 0 Positive regulator of sigma(E), RseC/MucC O-antigen_lig PF13425.1 gi|57641985|ref|YP_184463.1| - 2.2 8.2 10.2 15 5.5 7.1 1.9 1 1 0 1 1 1 0 O-antigen ligase like membrane protein APH PF01636.18 gi|57641986|ref|YP_184464.1| - 0.00052 19.8 0.0 0.0033 17.1 0.0 2.0 1 1 0 2 2 2 1 Phosphotransferase enzyme family AsnC_trans_reg PF01037.16 gi|57641987|ref|YP_184465.1| - 7.8e-20 70.3 0.5 8.5e-20 70.2 0.3 1.0 1 0 0 1 1 1 1 AsnC family HMA PF00403.21 gi|57641987|ref|YP_184465.1| - 0.0011 19.0 0.2 0.0013 18.7 0.1 1.1 1 0 0 1 1 1 1 Heavy-metal-associated domain GYD PF08734.6 gi|57641987|ref|YP_184465.1| - 0.0082 15.8 1.3 0.054 13.2 0.2 2.1 1 1 1 2 2 2 2 GYD domain MinC_N PF05209.8 gi|57641987|ref|YP_184465.1| - 0.039 13.7 0.1 0.14 11.9 0.0 1.8 2 0 0 2 2 2 0 Septum formation inhibitor MinC, N-terminal domain ABC_tran PF00005.22 gi|57641988|ref|YP_184466.1| - 1.4e-30 106.3 0.0 2.1e-30 105.8 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|57641988|ref|YP_184466.1| - 5.7e-15 56.0 0.4 1.3e-12 48.3 0.2 2.2 1 1 0 1 1 1 1 AAA domain DUF4162 PF13732.1 gi|57641988|ref|YP_184466.1| - 1.3e-06 28.8 0.0 3.2e-06 27.5 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_10 PF12846.2 gi|57641988|ref|YP_184466.1| - 0.0017 17.8 0.1 2.2 7.6 0.1 2.8 2 1 1 3 3 3 2 AAA-like domain AAA_29 PF13555.1 gi|57641988|ref|YP_184466.1| - 0.0044 16.5 0.0 0.0086 15.5 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|57641988|ref|YP_184466.1| - 0.015 14.4 0.0 2.3 7.3 0.0 2.2 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|57641988|ref|YP_184466.1| - 0.021 15.1 2.6 0.062 13.6 1.8 2.1 1 1 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.18 gi|57641988|ref|YP_184466.1| - 0.023 14.6 1.1 3.3 7.6 0.4 3.0 1 1 1 2 2 2 0 50S ribosome-binding GTPase Response_reg PF00072.19 gi|57641988|ref|YP_184466.1| - 0.096 12.7 0.0 0.77 9.7 0.0 2.3 3 0 0 3 3 3 0 Response regulator receiver domain AAA_25 PF13481.1 gi|57641988|ref|YP_184466.1| - 0.13 11.5 0.1 0.59 9.4 0.0 2.0 2 1 0 2 2 2 0 AAA domain ABC2_membrane_2 PF12679.2 gi|57641989|ref|YP_184467.1| - 1e-64 218.0 13.8 1.2e-64 217.9 9.5 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|57641989|ref|YP_184467.1| - 1.3e-18 67.0 13.8 2.1e-18 66.3 9.5 1.3 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|57641989|ref|YP_184467.1| - 6.2e-09 35.3 13.4 9.3e-09 34.7 9.3 1.2 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|57641989|ref|YP_184467.1| - 1.2e-08 34.4 16.6 1.2e-08 34.4 11.5 1.9 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|57641989|ref|YP_184467.1| - 0.0029 16.9 17.7 0.031 13.5 12.3 2.3 1 1 0 1 1 1 1 ABC-2 family transporter protein DUF3413 PF11893.3 gi|57641989|ref|YP_184467.1| - 0.015 14.2 0.1 0.015 14.2 0.1 1.9 2 1 0 2 2 2 0 Domain of unknown function (DUF3413) NVEALA PF14055.1 gi|57641989|ref|YP_184467.1| - 0.78 9.4 2.7 4.3 7.0 0.6 2.7 2 0 0 2 2 2 0 NVEALA protein ABC2_membrane_2 PF12679.2 gi|57641990|ref|YP_184468.1| - 6.8e-17 61.2 10.2 6.8e-17 61.2 7.0 2.9 1 1 0 2 2 2 2 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|57641990|ref|YP_184468.1| - 5.2e-13 48.7 37.8 2.9e-08 33.1 8.7 2.2 2 0 0 2 2 2 2 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|57641990|ref|YP_184468.1| - 2.7e-07 29.9 13.5 2.7e-07 29.9 9.3 2.5 2 1 0 2 2 2 2 ABC-2 family transporter protein Oxygenase-NA PF09859.4 gi|57641990|ref|YP_184468.1| - 0.17 11.2 0.0 0.27 10.5 0.0 1.2 1 0 0 1 1 1 0 Oxygenase, catalysing oxidative methylation of damaged DNA ABC2_membrane_2 PF12679.2 gi|57641991|ref|YP_184469.1| - 0.0021 17.0 0.5 0.0021 17.0 0.3 5.1 2 2 3 5 5 5 3 ABC-2 family transporter protein BPD_transp_1 PF00528.17 gi|57641992|ref|YP_184470.1| - 1.2e-13 50.9 11.5 1.2e-13 50.9 8.0 1.9 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component PhoU_div PF01865.11 gi|57641995|ref|YP_184473.1| - 5.9e-69 231.5 9.4 6.5e-69 231.3 6.5 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF47 PhoU PF01895.14 gi|57641995|ref|YP_184473.1| - 5e-06 26.8 10.7 0.00099 19.5 0.9 2.5 2 0 0 2 2 2 2 PhoU domain NUC173 PF08161.7 gi|57641995|ref|YP_184473.1| - 0.078 12.3 0.5 0.17 11.2 0.3 1.4 1 0 0 1 1 1 0 NUC173 domain ERM PF00769.14 gi|57641995|ref|YP_184473.1| - 0.77 9.2 5.7 1.1 8.7 4.0 1.4 1 1 0 1 1 1 0 Ezrin/radixin/moesin family PHO4 PF01384.15 gi|57641996|ref|YP_184474.1| - 3.9e-113 377.3 34.2 4.8e-113 377.1 23.7 1.1 1 0 0 1 1 1 1 Phosphate transporter family HTH_IclR PF09339.5 gi|57641996|ref|YP_184474.1| - 0.067 12.7 0.0 2.1 8.0 0.0 2.3 2 0 0 2 2 2 0 IclR helix-turn-helix domain Myc_target_1 PF15179.1 gi|57641996|ref|YP_184474.1| - 0.84 9.1 2.4 8.7 5.8 0.1 2.2 2 0 0 2 2 2 0 Myc target protein 1 Metallophos PF00149.23 gi|57641997|ref|YP_184475.1| - 1.9e-12 46.9 1.3 5.1e-12 45.6 0.9 1.7 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.2 gi|57641997|ref|YP_184475.1| - 4e-06 26.7 0.0 7.9e-06 25.7 0.0 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Cupin_2 PF07883.6 gi|57641998|ref|YP_184476.1| - 8.6e-16 57.1 0.7 1.1e-15 56.8 0.5 1.1 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.14 gi|57641998|ref|YP_184476.1| - 1.1e-09 38.0 0.1 1.4e-09 37.7 0.1 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_1 PF00190.17 gi|57641998|ref|YP_184476.1| - 2.5e-06 26.9 0.0 3.1e-06 26.6 0.0 1.1 1 0 0 1 1 1 1 Cupin Auxin_BP PF02041.11 gi|57641998|ref|YP_184476.1| - 4.5e-05 22.9 0.0 9.9e-05 21.8 0.0 1.5 1 1 0 1 1 1 1 Auxin binding protein MannoseP_isomer PF01050.13 gi|57641998|ref|YP_184476.1| - 7.2e-05 22.4 0.0 8.9e-05 22.1 0.0 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase Cupin_3 PF05899.7 gi|57641998|ref|YP_184476.1| - 0.0013 18.0 0.0 0.0018 17.6 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF861) Ectoine_synth PF06339.7 gi|57641998|ref|YP_184476.1| - 0.0049 16.7 0.0 0.0051 16.7 0.0 1.1 1 0 0 1 1 1 1 Ectoine synthase DUF1637 PF07847.7 gi|57641998|ref|YP_184476.1| - 0.0079 15.5 0.0 0.01 15.2 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1637) Cupin_7 PF12973.2 gi|57641998|ref|YP_184476.1| - 0.014 15.1 0.1 0.019 14.8 0.0 1.2 1 0 0 1 1 1 0 ChrR Cupin-like domain Radical_SAM PF04055.16 gi|57641999|ref|YP_184477.1| - 1.5e-26 93.5 0.3 3.2e-23 82.7 0.1 2.3 2 0 0 2 2 2 2 Radical SAM superfamily UPF0004 PF00919.15 gi|57641999|ref|YP_184477.1| - 1.9e-21 75.7 0.0 4.3e-21 74.5 0.0 1.6 1 0 0 1 1 1 1 Uncharacterized protein family UPF0004 TRAM PF01938.15 gi|57641999|ref|YP_184477.1| - 1.7e-09 37.3 0.1 3.5e-09 36.3 0.1 1.5 1 0 0 1 1 1 1 TRAM domain HMGL-like PF00682.14 gi|57641999|ref|YP_184477.1| - 0.14 11.8 0.0 0.37 10.3 0.0 1.8 2 1 0 2 2 2 0 HMGL-like TRAM PF01938.15 gi|57642000|ref|YP_184478.1| - 8.6e-15 54.2 1.9 9.9e-15 54.0 1.3 1.1 1 0 0 1 1 1 1 TRAM domain HycI PF01750.13 gi|57642001|ref|YP_184479.1| - 5.4e-25 87.4 1.0 6.5e-25 87.1 0.7 1.1 1 0 0 1 1 1 1 Hydrogenase maturation protease PIN PF01850.16 gi|57642002|ref|YP_184480.1| - 3.7e-22 78.9 0.0 4.3e-22 78.7 0.0 1.0 1 0 0 1 1 1 1 PIN domain DUF349 PF03993.7 gi|57642003|ref|YP_184481.1| - 0.052 13.7 1.1 0.07 13.2 0.8 1.2 1 0 0 1 1 1 0 Domain of Unknown Function (DUF349) MHCassoc_trimer PF08831.5 gi|57642003|ref|YP_184481.1| - 0.065 13.0 1.3 0.082 12.7 0.9 1.4 1 1 0 1 1 1 0 Class II MHC-associated invariant chain trimerisation domain NiFeSe_Hases PF00374.14 gi|57642004|ref|YP_184482.1| - 2.8e-26 92.3 0.0 2.4e-12 46.4 0.0 2.8 1 1 1 3 3 3 2 Nickel-dependent hydrogenase Oxidored_q6 PF01058.17 gi|57642005|ref|YP_184483.1| - 1.4e-26 92.6 0.0 2.4e-26 91.8 0.0 1.4 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit eIF2_C PF09173.6 gi|57642005|ref|YP_184483.1| - 0.019 14.9 0.0 0.038 14.0 0.0 1.4 1 0 0 1 1 1 0 Initiation factor eIF2 gamma, C terminal Zn_clus PF00172.13 gi|57642005|ref|YP_184483.1| - 2 8.3 5.1 6.4 6.7 0.1 2.5 2 0 0 2 2 2 0 Fungal Zn(2)-Cys(6) binuclear cluster domain DHODB_Fe-S_bind PF10418.4 gi|57642006|ref|YP_184484.1| - 5.1e-16 57.8 2.3 8.4e-16 57.1 1.6 1.4 1 0 0 1 1 1 1 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B NAD_binding_1 PF00175.16 gi|57642006|ref|YP_184484.1| - 2.3e-14 53.9 0.0 3.5e-14 53.2 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase NAD-binding domain FAD_binding_6 PF00970.19 gi|57642006|ref|YP_184484.1| - 1.3e-12 47.6 0.0 2e-12 47.1 0.0 1.2 1 0 0 1 1 1 1 Oxidoreductase FAD-binding domain NAD_binding_6 PF08030.7 gi|57642006|ref|YP_184484.1| - 0.00018 21.4 0.0 0.078 12.8 0.0 2.2 1 1 1 2 2 2 2 Ferric reductase NAD binding domain FAD_binding_8 PF08022.7 gi|57642006|ref|YP_184484.1| - 0.0099 15.7 0.0 0.054 13.3 0.0 2.2 3 0 0 3 3 3 1 FAD-binding domain Fer4_18 PF13746.1 gi|57642007|ref|YP_184485.1| - 1.8e-13 50.6 12.0 1.8e-13 50.6 8.3 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|57642007|ref|YP_184485.1| - 2.7e-07 30.5 20.9 9.9e-06 25.4 9.1 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|57642007|ref|YP_184485.1| - 6.9e-07 29.5 7.0 0.0094 16.3 1.1 2.6 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|57642007|ref|YP_184485.1| - 1.2e-06 28.0 10.8 0.0037 17.0 1.3 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|57642007|ref|YP_184485.1| - 2.4e-06 27.7 12.3 0.0062 16.8 0.7 2.8 3 0 0 3 3 2 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|57642007|ref|YP_184485.1| - 9.8e-06 24.9 13.3 0.0032 17.0 2.2 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|57642007|ref|YP_184485.1| - 2.4e-05 24.5 23.1 0.00053 20.1 9.8 3.1 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|57642007|ref|YP_184485.1| - 3.5e-05 23.5 13.9 0.0089 15.8 1.5 2.7 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|57642007|ref|YP_184485.1| - 0.00049 19.9 11.7 0.09 12.6 2.3 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|57642007|ref|YP_184485.1| - 0.0021 18.2 1.2 0.0021 18.2 0.8 3.4 4 0 0 4 4 3 1 4Fe-4S binding domain Fer4_6 PF12837.2 gi|57642007|ref|YP_184485.1| - 0.037 13.9 19.4 0.13 12.2 2.0 2.9 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_13 PF13370.1 gi|57642007|ref|YP_184485.1| - 0.73 10.2 10.5 3 8.2 2.0 2.7 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_16 PF13484.1 gi|57642007|ref|YP_184485.1| - 0.85 10.4 15.4 2 9.2 1.8 2.7 1 1 2 3 3 3 0 4Fe-4S double cluster binding domain Fer4_15 PF13459.1 gi|57642007|ref|YP_184485.1| - 2.4 8.7 9.4 7.1 7.2 0.3 2.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_7 PF12838.2 gi|57642008|ref|YP_184486.1| - 2.6e-10 40.4 9.1 2.6e-10 40.4 6.3 2.5 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|57642008|ref|YP_184486.1| - 2e-07 30.3 3.9 2e-07 30.3 2.7 4.3 4 1 0 4 4 4 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|57642008|ref|YP_184486.1| - 1.4e-06 27.8 13.4 5.1e-05 22.9 2.8 3.5 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|57642008|ref|YP_184486.1| - 4.2e-06 27.4 13.0 0.0027 18.3 0.5 2.6 2 1 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_10 PF13237.1 gi|57642008|ref|YP_184486.1| - 7.4e-06 25.6 10.7 7.4e-06 25.6 7.4 2.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|57642008|ref|YP_184486.1| - 1.1e-05 25.1 5.9 1.1e-05 25.1 4.1 2.0 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|57642008|ref|YP_184486.1| - 1.7e-05 24.9 11.5 1.7e-05 24.9 8.0 2.8 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|57642008|ref|YP_184486.1| - 0.00033 20.3 4.0 0.00033 20.3 2.8 3.5 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|57642008|ref|YP_184486.1| - 0.00048 20.4 16.5 0.0048 17.2 1.1 3.1 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|57642008|ref|YP_184486.1| - 0.0006 19.9 1.5 0.0006 19.9 1.0 3.8 4 0 0 4 4 4 1 4Fe-4S binding domain Fer4_8 PF13183.1 gi|57642008|ref|YP_184486.1| - 0.00094 19.1 17.9 0.0097 15.9 7.8 2.7 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|57642008|ref|YP_184486.1| - 0.033 14.5 1.9 0.033 14.5 1.3 3.1 3 1 0 3 3 3 0 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|57642008|ref|YP_184486.1| - 0.046 13.6 9.3 0.31 10.9 1.9 3.0 2 1 1 3 3 3 0 4Fe-4S dicluster domain Ribosomal_L34e PF01199.13 gi|57642008|ref|YP_184486.1| - 0.055 13.6 1.0 0.081 13.1 0.1 1.7 2 0 0 2 2 2 0 Ribosomal protein L34e Fer4_15 PF13459.1 gi|57642008|ref|YP_184486.1| - 0.079 13.5 11.2 0.089 13.3 6.4 2.0 2 1 0 2 2 2 0 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|57642008|ref|YP_184486.1| - 0.094 13.3 7.4 0.094 13.3 5.1 3.7 4 1 0 4 4 4 0 4Fe-4S binding domain Mut7-C PF01927.11 gi|57642008|ref|YP_184486.1| - 0.1 12.5 0.3 0.1 12.5 0.2 1.5 1 1 0 1 1 1 0 Mut7-C RNAse domain DZR PF12773.2 gi|57642008|ref|YP_184486.1| - 0.16 11.8 0.2 0.16 11.8 0.1 2.8 2 1 0 2 2 1 0 Double zinc ribbon Stig1 PF04885.8 gi|57642008|ref|YP_184486.1| - 2.6 8.2 12.1 0.21 11.7 4.4 1.9 3 0 0 3 3 2 0 Stigma-specific protein, Stig1 Pyr_redox_2 PF07992.9 gi|57642009|ref|YP_184487.1| - 1.6e-22 80.3 0.0 3e-22 79.4 0.0 1.9 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|57642009|ref|YP_184487.1| - 3e-15 56.8 0.0 7.9e-08 32.6 0.0 3.0 2 1 1 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|57642009|ref|YP_184487.1| - 1.2e-08 35.1 1.2 0.00045 20.5 0.1 2.5 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|57642009|ref|YP_184487.1| - 1.3e-07 31.5 0.6 6.6e-07 29.2 0.0 2.2 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FMO-like PF00743.14 gi|57642009|ref|YP_184487.1| - 1.1e-06 27.1 0.0 0.0012 17.1 0.0 2.1 2 0 0 2 2 2 2 Flavin-binding monooxygenase-like FAD_binding_2 PF00890.19 gi|57642009|ref|YP_184487.1| - 4.3e-06 25.8 2.5 0.02 13.7 0.1 4.3 4 1 1 5 5 5 1 FAD binding domain AlaDh_PNT_C PF01262.16 gi|57642009|ref|YP_184487.1| - 6.5e-05 22.5 0.1 0.049 13.1 0.0 3.0 3 0 0 3 3 3 1 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_7 PF13241.1 gi|57642009|ref|YP_184487.1| - 0.00011 22.3 0.0 0.15 12.3 0.0 2.5 2 1 0 2 2 2 2 Putative NAD(P)-binding HI0933_like PF03486.9 gi|57642009|ref|YP_184487.1| - 0.00017 20.2 0.6 0.00042 18.9 0.1 1.9 2 0 0 2 2 2 1 HI0933-like protein Shikimate_DH PF01488.15 gi|57642009|ref|YP_184487.1| - 0.00023 21.2 0.1 0.41 10.7 0.0 3.0 3 0 0 3 3 3 2 Shikimate / quinate 5-dehydrogenase DAO PF01266.19 gi|57642009|ref|YP_184487.1| - 0.00032 19.7 1.5 0.02 13.8 0.1 3.1 2 1 1 4 4 4 1 FAD dependent oxidoreductase GIDA PF01134.17 gi|57642009|ref|YP_184487.1| - 0.00036 19.5 1.5 0.4 9.4 0.0 2.8 3 0 0 3 3 3 2 Glucose inhibited division protein A FAD_binding_3 PF01494.14 gi|57642009|ref|YP_184487.1| - 0.0015 17.6 0.3 0.0055 15.8 0.0 1.9 2 0 0 2 2 2 1 FAD binding domain Thi4 PF01946.12 gi|57642009|ref|YP_184487.1| - 0.004 16.2 0.1 0.025 13.7 0.0 2.0 2 0 0 2 2 2 1 Thi4 family FAD_oxidored PF12831.2 gi|57642009|ref|YP_184487.1| - 0.005 15.9 0.1 3.7 6.5 0.0 3.0 3 0 0 3 3 3 1 FAD dependent oxidoreductase NAD_binding_9 PF13454.1 gi|57642009|ref|YP_184487.1| - 0.0086 15.8 0.1 0.077 12.7 0.1 2.5 3 0 0 3 3 3 1 FAD-NAD(P)-binding 2-Hacid_dh_C PF02826.14 gi|57642009|ref|YP_184487.1| - 0.009 15.1 0.0 1.1 8.4 0.0 2.8 3 0 0 3 3 3 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_10 PF13460.1 gi|57642009|ref|YP_184487.1| - 0.022 14.7 0.0 3 7.7 0.0 2.5 3 0 0 3 3 3 0 NADH(P)-binding DJ-1_PfpI PF01965.19 gi|57642009|ref|YP_184487.1| - 0.025 14.0 0.0 0.15 11.5 0.0 2.1 2 0 0 2 2 2 0 DJ-1/PfpI family 3HCDH_N PF02737.13 gi|57642009|ref|YP_184487.1| - 0.033 13.8 0.1 0.2 11.3 0.0 2.1 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain K_oxygenase PF13434.1 gi|57642009|ref|YP_184487.1| - 0.067 12.0 0.0 1 8.2 0.0 2.4 2 0 0 2 2 2 0 L-lysine 6-monooxygenase (NADPH-requiring) Strep_67kDa_ant PF06100.6 gi|57642009|ref|YP_184487.1| - 0.079 11.2 0.0 0.11 10.8 0.0 1.1 1 0 0 1 1 1 0 Streptococcal 67 kDa myosin-cross-reactive antigen like family Fer4_11 PF13247.1 gi|57642010|ref|YP_184488.1| - 1.1e-29 102.2 9.4 1.1e-29 102.2 6.5 1.9 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|57642010|ref|YP_184488.1| - 4.6e-14 51.3 40.1 6.1e-07 28.7 2.6 5.6 6 0 0 6 6 6 4 4Fe-4S binding domain Fer4_7 PF12838.2 gi|57642010|ref|YP_184488.1| - 5.9e-12 45.7 54.7 8.3e-08 32.5 7.8 3.8 1 1 4 5 5 5 5 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|57642010|ref|YP_184488.1| - 1.8e-11 44.1 49.6 2.7e-06 27.5 6.9 3.5 1 1 3 4 4 4 4 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|57642010|ref|YP_184488.1| - 2.7e-11 43.0 30.8 9.2e-06 25.3 8.5 4.0 1 1 3 4 4 4 3 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|57642010|ref|YP_184488.1| - 1.1e-10 40.9 42.2 3e-06 26.8 2.0 4.9 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_16 PF13484.1 gi|57642010|ref|YP_184488.1| - 3.2e-08 34.2 26.2 0.066 13.9 1.4 5.0 4 1 1 5 5 5 4 4Fe-4S double cluster binding domain Fer4_2 PF12797.2 gi|57642010|ref|YP_184488.1| - 3.4e-07 29.8 37.3 3.8e-05 23.3 1.7 4.7 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_17 PF13534.1 gi|57642010|ref|YP_184488.1| - 2.2e-06 27.8 25.0 0.61 10.4 0.4 4.5 2 1 2 4 4 4 4 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|57642010|ref|YP_184488.1| - 0.00016 21.9 44.3 0.028 14.9 2.9 4.3 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_4 PF12800.2 gi|57642010|ref|YP_184488.1| - 0.00016 21.7 35.4 0.0042 17.3 1.3 4.7 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_8 PF13183.1 gi|57642010|ref|YP_184488.1| - 0.00053 19.9 32.0 0.67 10.0 8.6 4.5 2 2 1 3 3 3 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|57642010|ref|YP_184488.1| - 0.0062 17.0 25.9 0.022 15.3 5.2 3.4 2 2 0 2 2 2 1 4Fe-4S single cluster domain Fer4_21 PF14697.1 gi|57642010|ref|YP_184488.1| - 0.011 15.6 31.3 0.014 15.2 7.8 3.6 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|57642010|ref|YP_184488.1| - 0.31 11.5 29.7 0.11 12.8 1.6 4.6 4 1 1 5 5 5 0 4Fe-4S dicluster domain Molybdopterin PF00384.17 gi|57642011|ref|YP_184489.1| - 1.8e-93 313.6 0.0 2.3e-93 313.3 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|57642011|ref|YP_184489.1| - 6.1e-33 112.9 0.1 1.4e-32 111.7 0.1 1.6 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.11 gi|57642011|ref|YP_184489.1| - 5.8e-12 45.2 0.1 1.3e-11 44.1 0.1 1.6 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain Fer4_11 PF13247.1 gi|57642012|ref|YP_184490.1| - 1.8e-29 101.5 7.6 1.8e-29 101.5 5.3 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|57642012|ref|YP_184490.1| - 1.4e-13 50.9 49.7 3.1e-06 27.4 8.5 2.9 1 1 3 4 4 4 4 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|57642012|ref|YP_184490.1| - 2.1e-12 47.1 25.2 7.7e-07 29.2 5.1 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|57642012|ref|YP_184490.1| - 3.3e-11 42.2 36.9 0.00032 20.1 2.7 5.3 6 0 0 6 6 6 4 4Fe-4S binding domain Fer4_10 PF13237.1 gi|57642012|ref|YP_184490.1| - 5.9e-10 38.8 50.2 3.1e-05 23.6 8.2 3.2 1 1 3 4 4 4 3 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|57642012|ref|YP_184490.1| - 1.4e-09 37.4 37.7 0.00035 20.3 2.2 4.9 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_3 PF12798.2 gi|57642012|ref|YP_184490.1| - 1.6e-08 34.4 41.3 0.00086 19.6 2.2 4.2 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_2 PF12797.2 gi|57642012|ref|YP_184490.1| - 3.5e-07 29.7 35.6 7.9e-06 25.4 2.0 4.7 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_21 PF14697.1 gi|57642012|ref|YP_184490.1| - 2e-06 27.5 29.2 3.2e-05 23.6 5.6 3.8 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|57642012|ref|YP_184490.1| - 1.3e-05 25.4 23.6 0.072 13.4 0.9 4.3 2 1 0 3 3 3 3 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|57642012|ref|YP_184490.1| - 3.3e-05 24.5 26.7 1.7 9.4 0.0 4.7 4 1 0 4 4 4 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|57642012|ref|YP_184490.1| - 4.1e-05 23.5 34.0 0.01 16.0 1.6 4.7 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_8 PF13183.1 gi|57642012|ref|YP_184490.1| - 0.00065 19.6 30.0 0.015 15.3 14.0 3.6 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|57642012|ref|YP_184490.1| - 0.051 13.9 2.1 0.051 13.9 1.5 4.5 3 1 1 4 4 4 0 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|57642013|ref|YP_184491.1| - 4.7e-20 71.7 39.1 4.3e-13 49.4 7.3 3.0 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|57642013|ref|YP_184491.1| - 9.8e-15 53.6 12.3 1.7e-10 40.3 2.2 3.6 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4 PF00037.22 gi|57642013|ref|YP_184491.1| - 9.2e-14 50.3 25.5 5.5e-11 41.5 3.0 3.6 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|57642013|ref|YP_184491.1| - 1.2e-13 50.6 24.8 6.6e-11 41.8 7.5 2.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|57642013|ref|YP_184491.1| - 3.2e-11 42.9 9.1 3.2e-11 42.9 6.3 2.3 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|57642013|ref|YP_184491.1| - 7.7e-10 38.1 21.2 1.4e-07 31.0 3.0 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|57642013|ref|YP_184491.1| - 1.3e-09 38.1 11.6 1.3e-09 38.1 8.0 2.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|57642013|ref|YP_184491.1| - 8.4e-09 35.3 8.6 8.4e-09 35.3 6.0 2.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|57642013|ref|YP_184491.1| - 1.3e-08 35.4 12.5 0.00084 20.0 0.3 2.6 2 1 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_18 PF13746.1 gi|57642013|ref|YP_184491.1| - 6e-06 26.5 19.2 0.001 19.4 1.9 3.5 3 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|57642013|ref|YP_184491.1| - 1.4e-05 25.3 15.7 0.00085 19.6 7.8 3.2 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|57642013|ref|YP_184491.1| - 3.2e-05 23.9 2.0 3.2e-05 23.9 1.4 4.0 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|57642013|ref|YP_184491.1| - 0.00093 19.7 1.3 0.00093 19.7 0.9 3.0 2 1 1 3 3 3 1 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|57642013|ref|YP_184491.1| - 0.0015 18.9 9.2 0.0015 18.9 6.4 4.0 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_13 PF13370.1 gi|57642013|ref|YP_184491.1| - 0.0049 17.2 14.3 0.011 16.1 2.2 2.8 3 0 0 3 3 3 1 4Fe-4S single cluster domain NinF PF05810.7 gi|57642013|ref|YP_184491.1| - 0.28 11.0 5.0 0.29 10.9 0.0 3.0 3 0 0 3 3 3 0 NinF protein Fer4_19 PF06902.6 gi|57642013|ref|YP_184491.1| - 0.36 10.6 6.9 3.5 7.5 0.1 3.4 2 1 1 3 3 3 0 Divergent 4Fe-4S mono-cluster Fer4_11 PF13247.1 gi|57642013|ref|YP_184491.1| - 0.51 10.2 7.9 0.15 11.9 2.4 2.1 1 1 0 2 2 2 0 4Fe-4S dicluster domain Form_Nir_trans PF01226.12 gi|57642014|ref|YP_184492.1| - 8.2e-77 257.4 21.8 1.2e-76 256.8 15.1 1.3 1 0 0 1 1 1 1 Formate/nitrite transporter MNHE PF01899.11 gi|57642015|ref|YP_184493.1| - 3.9e-41 140.2 0.1 4.7e-41 140.0 0.1 1.0 1 0 0 1 1 1 1 Na+/H+ ion antiporter subunit DUF2074 PF09847.4 gi|57642015|ref|YP_184493.1| - 0.23 10.1 1.4 0.24 10.1 1.0 1.0 1 0 0 1 1 1 0 Predicted permease (DUF2074) MrpF_PhaF PF04066.8 gi|57642016|ref|YP_184494.1| - 3.5e-21 75.2 4.7 3.5e-21 75.2 3.2 1.9 2 0 0 2 2 2 1 Multiple resistance and pH regulation protein F (MrpF / PhaF) DUF2109 PF09882.4 gi|57642016|ref|YP_184494.1| - 0.19 11.6 1.9 0.25 11.3 1.3 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2109) DUF2108 PF09881.4 gi|57642016|ref|YP_184494.1| - 0.8 9.5 12.1 0.05 13.4 4.5 1.8 2 1 0 2 2 2 0 Predicted membrane protein (DUF2108) PhaG_MnhG_YufB PF03334.9 gi|57642017|ref|YP_184495.1| - 1.3e-23 82.8 7.9 1.6e-23 82.5 5.5 1.1 1 0 0 1 1 1 1 Na+/H+ antiporter subunit MotA_ExbB PF01618.11 gi|57642017|ref|YP_184495.1| - 0.081 12.5 0.0 0.13 11.9 0.0 1.3 1 0 0 1 1 1 0 MotA/TolQ/ExbB proton channel family Claudin_3 PF06653.6 gi|57642017|ref|YP_184495.1| - 0.13 12.0 0.1 0.13 12.0 0.1 1.7 2 0 0 2 2 2 0 Tight junction protein, Claudin-like DUF4040 PF13244.1 gi|57642018|ref|YP_184496.1| - 3.4e-18 65.3 5.5 4.9e-18 64.8 3.8 1.3 1 1 0 1 1 1 1 Domain of unknown function (DUF4040) TspO_MBR PF03073.10 gi|57642018|ref|YP_184496.1| - 0.1 12.1 1.4 0.14 11.6 1.0 1.2 1 0 0 1 1 1 0 TspO/MBR family DUF3814 PF12769.2 gi|57642018|ref|YP_184496.1| - 0.39 10.9 2.2 9.8 6.4 0.0 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF3814) Polysacc_synt_C PF14667.1 gi|57642018|ref|YP_184496.1| - 5.8 6.7 9.3 31 4.3 6.7 1.7 1 1 1 2 2 2 0 Polysaccharide biosynthesis C-terminal domain DUF2106 PF09879.4 gi|57642019|ref|YP_184497.1| - 0.061 12.6 0.1 0.079 12.2 0.1 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2106) MnhB PF04039.8 gi|57642020|ref|YP_184498.1| - 1.1e-30 106.2 14.8 1.3e-30 106.0 10.3 1.1 1 0 0 1 1 1 1 Domain related to MnhB subunit of Na+/H+ antiporter Oxidored_q2 PF00420.19 gi|57642021|ref|YP_184499.1| - 4.3e-23 80.7 3.7 4.8e-23 80.5 2.5 1.0 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DUF2108 PF09881.4 gi|57642021|ref|YP_184499.1| - 0.034 13.9 3.9 0.034 13.9 2.7 1.8 2 0 0 2 2 2 0 Predicted membrane protein (DUF2108) DUF4383 PF14325.1 gi|57642021|ref|YP_184499.1| - 0.54 10.2 5.9 0.2 11.7 1.6 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4383) COPI_assoc PF08507.5 gi|57642021|ref|YP_184499.1| - 0.54 9.9 7.0 1.6 8.4 4.9 1.7 1 1 0 1 1 1 0 COPI associated protein CD20 PF04103.10 gi|57642021|ref|YP_184499.1| - 0.61 10.0 5.3 4.8 7.0 0.4 2.1 2 0 0 2 2 2 0 CD20-like family DUF308 PF03729.8 gi|57642021|ref|YP_184499.1| - 0.79 9.7 6.3 10 6.2 0.0 2.3 2 1 0 2 2 2 0 Short repeat of unknown function (DUF308) DUF46 PF01864.12 gi|57642021|ref|YP_184499.1| - 1.2 9.0 5.4 1.1 9.0 1.5 1.9 2 0 0 2 2 2 0 Putative integral membrane protein DUF46 Bax1-I PF01027.15 gi|57642021|ref|YP_184499.1| - 1.7 8.2 7.1 15 5.1 4.9 1.9 1 1 0 1 1 1 0 Inhibitor of apoptosis-promoting Bax1 BCLP PF12304.3 gi|57642021|ref|YP_184499.1| - 4.8 6.5 6.6 0.42 9.9 0.6 1.8 1 1 1 2 2 2 0 Beta-casein like protein DUF3188 PF11384.3 gi|57642021|ref|YP_184499.1| - 5 6.7 9.5 0.29 10.7 1.6 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF3188) DUF4418 PF14387.1 gi|57642021|ref|YP_184499.1| - 6.7 6.4 10.2 18 5.1 6.6 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4418) Oxidored_q1 PF00361.15 gi|57642022|ref|YP_184500.1| - 1.3e-54 185.2 23.0 1.3e-54 185.2 16.0 2.7 4 0 0 4 4 4 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1_N PF00662.15 gi|57642022|ref|YP_184500.1| - 1.5e-07 30.8 0.6 1.5e-07 30.8 0.4 2.6 2 0 0 2 2 2 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus UPF0139 PF03669.8 gi|57642022|ref|YP_184500.1| - 0.55 9.7 5.5 0.086 12.3 0.3 2.2 2 1 1 3 3 3 0 Uncharacterised protein family (UPF0139) DUF3681 PF12442.3 gi|57642023|ref|YP_184501.1| - 0.15 12.2 1.0 0.6 10.3 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3681) DUF4118 PF13493.1 gi|57642023|ref|YP_184501.1| - 0.21 11.8 0.3 0.21 11.8 0.2 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4118) Oxidored_q6 PF01058.17 gi|57642024|ref|YP_184502.1| - 3.4e-28 97.8 0.1 4.6e-28 97.4 0.1 1.1 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit RE_NgoFVII PF09565.5 gi|57642024|ref|YP_184502.1| - 0.057 12.3 0.0 0.08 11.8 0.0 1.1 1 0 0 1 1 1 0 NgoFVII restriction endonuclease Complex1_30kDa PF00329.14 gi|57642025|ref|YP_184503.1| - 6e-20 71.4 0.0 1.1e-19 70.5 0.0 1.5 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit DUF4349 PF14257.1 gi|57642025|ref|YP_184503.1| - 0.1 11.8 0.0 0.14 11.4 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4349) Complex1_49kDa PF00346.14 gi|57642026|ref|YP_184504.1| - 7.7e-32 110.3 0.0 2.5e-23 82.4 0.0 2.2 1 1 1 2 2 2 2 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NiFeSe_Hases PF00374.14 gi|57642026|ref|YP_184504.1| - 9.8e-17 60.8 2.3 2.1e-10 40.0 0.1 3.8 3 1 0 3 3 3 3 Nickel-dependent hydrogenase NADHdh PF00146.16 gi|57642027|ref|YP_184505.1| - 1.6e-31 109.5 16.6 1.9e-31 109.2 11.5 1.0 1 0 0 1 1 1 1 NADH dehydrogenase Fer4 PF00037.22 gi|57642028|ref|YP_184506.1| - 1.5e-15 56.0 14.2 1.3e-08 34.0 1.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|57642028|ref|YP_184506.1| - 1.6e-12 47.4 9.7 3.8e-12 46.2 6.8 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|57642028|ref|YP_184506.1| - 2.3e-12 47.1 10.2 4.6e-12 46.1 7.1 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|57642028|ref|YP_184506.1| - 7.6e-12 44.5 15.4 9.8e-07 28.3 2.9 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|57642028|ref|YP_184506.1| - 2.4e-11 43.4 31.8 6.8e-07 29.2 8.7 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|57642028|ref|YP_184506.1| - 6.1e-11 41.9 9.5 1.3e-10 40.9 6.7 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|57642028|ref|YP_184506.1| - 2.3e-10 41.0 6.7 3.7e-06 27.5 0.5 2.4 2 1 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.2 gi|57642028|ref|YP_184506.1| - 3e-09 36.2 14.2 1.2e-05 24.9 2.5 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|57642028|ref|YP_184506.1| - 2e-08 34.4 4.5 0.0026 18.0 0.1 2.3 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|57642028|ref|YP_184506.1| - 3.8e-08 33.0 15.7 0.00075 19.6 2.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|57642028|ref|YP_184506.1| - 5.6e-07 29.3 13.5 0.00029 20.6 2.6 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|57642028|ref|YP_184506.1| - 1.4e-06 28.5 16.4 0.00059 20.2 1.4 2.6 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|57642028|ref|YP_184506.1| - 8.1e-06 26.0 22.9 0.002 18.5 4.9 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|57642028|ref|YP_184506.1| - 0.0034 17.9 13.3 0.11 13.0 1.5 2.6 1 1 1 2 2 2 2 4Fe-4S single cluster domain Fer4_11 PF13247.1 gi|57642028|ref|YP_184506.1| - 0.0044 16.8 5.6 0.016 15.0 3.9 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|57642028|ref|YP_184506.1| - 0.014 15.7 13.7 0.021 15.2 0.5 2.9 2 1 1 3 3 3 0 4Fe-4S single cluster domain Fer4_19 PF06902.6 gi|57642028|ref|YP_184506.1| - 9.6 6.1 12.0 52 3.7 6.8 3.0 2 1 0 2 2 2 0 Divergent 4Fe-4S mono-cluster Rubrerythrin PF02915.12 gi|57642029|ref|YP_184507.1| - 7.5e-16 58.6 2.8 9.2e-16 58.4 1.9 1.1 1 0 0 1 1 1 1 Rubrerythrin Ferritin PF00210.19 gi|57642029|ref|YP_184507.1| - 5.6e-05 22.9 0.3 7.9e-05 22.4 0.2 1.2 1 0 0 1 1 1 1 Ferritin-like domain Ferritin_2 PF13668.1 gi|57642029|ref|YP_184507.1| - 7.6e-05 22.6 0.1 9.8e-05 22.3 0.1 1.1 1 0 0 1 1 1 1 Ferritin-like domain DUF2383 PF09537.5 gi|57642029|ref|YP_184507.1| - 0.00048 20.3 0.1 0.49 10.6 0.0 2.3 2 1 0 2 2 2 2 Domain of unknown function (DUF2383) MiaE_2 PF13794.1 gi|57642029|ref|YP_184507.1| - 0.085 12.3 0.2 0.47 9.9 0.1 1.9 1 1 1 2 2 2 0 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE)-like RPAP3_C PF13877.1 gi|57642029|ref|YP_184507.1| - 0.12 12.3 0.8 3.2 7.7 0.1 2.9 2 1 1 3 3 3 0 Potential Monad-binding region of RPAP3 Rubrerythrin PF02915.12 gi|57642030|ref|YP_184508.1| - 1.7e-18 67.2 2.8 2e-18 67.0 2.0 1.0 1 0 0 1 1 1 1 Rubrerythrin Ferritin_2 PF13668.1 gi|57642030|ref|YP_184508.1| - 2.7e-07 30.6 0.0 3.2e-07 30.3 0.0 1.1 1 0 0 1 1 1 1 Ferritin-like domain Ferritin PF00210.19 gi|57642030|ref|YP_184508.1| - 1.9e-06 27.7 0.5 2.6e-06 27.2 0.3 1.2 1 0 0 1 1 1 1 Ferritin-like domain DUF2383 PF09537.5 gi|57642030|ref|YP_184508.1| - 0.00033 20.8 1.1 0.02 15.1 0.2 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF2383) DUF2202 PF09968.4 gi|57642030|ref|YP_184508.1| - 0.039 13.6 0.2 0.082 12.5 0.1 1.5 1 0 0 1 1 1 0 Uncharacterized protein domain (DUF2202) CM_2 PF01817.16 gi|57642030|ref|YP_184508.1| - 0.041 13.9 0.7 3.8 7.6 0.0 2.4 2 1 0 2 2 2 0 Chorismate mutase type II MiaE PF06175.6 gi|57642030|ref|YP_184508.1| - 0.058 12.7 0.3 0.56 9.5 0.0 2.0 1 1 0 2 2 2 0 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) Rubrerythrin PF02915.12 gi|57642031|ref|YP_184509.1| - 9.4e-18 64.8 13.4 2.5e-17 63.4 9.0 1.8 1 1 0 1 1 1 1 Rubrerythrin Ferritin_2 PF13668.1 gi|57642031|ref|YP_184509.1| - 2.7e-08 33.8 2.0 3.2e-08 33.6 1.4 1.1 1 0 0 1 1 1 1 Ferritin-like domain DUF2383 PF09537.5 gi|57642031|ref|YP_184509.1| - 1.7e-07 31.4 5.9 0.00015 22.0 1.2 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF2383) Potyvirid-P3 PF13608.1 gi|57642031|ref|YP_184509.1| - 0.022 13.9 0.8 0.035 13.2 0.5 1.4 1 1 0 1 1 1 0 Protein P3 of Potyviral polyprotein DUF4197 PF13852.1 gi|57642031|ref|YP_184509.1| - 0.022 14.2 0.5 0.048 13.1 0.2 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF4197) DUF3231 PF11553.3 gi|57642031|ref|YP_184509.1| - 0.029 13.8 2.8 1.9 8.0 0.2 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF3231) Sec7 PF01369.15 gi|57642031|ref|YP_184509.1| - 0.066 12.8 0.8 0.11 12.2 0.6 1.3 1 0 0 1 1 1 0 Sec7 domain DUF1877 PF08974.5 gi|57642031|ref|YP_184509.1| - 0.074 12.7 0.4 0.074 12.7 0.3 2.2 1 1 0 2 2 2 0 Domain of unknown function (DUF1877) DUF3067 PF11267.3 gi|57642031|ref|YP_184509.1| - 0.079 13.0 0.0 5 7.2 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3067) DUF2202 PF09968.4 gi|57642031|ref|YP_184509.1| - 0.14 11.8 4.6 5.7 6.5 0.0 2.5 2 1 0 2 2 2 0 Uncharacterized protein domain (DUF2202) Ferritin PF00210.19 gi|57642031|ref|YP_184509.1| - 0.16 11.6 9.2 1.3 8.7 6.4 2.3 1 1 0 1 1 1 0 Ferritin-like domain PNPase PF03726.9 gi|57642031|ref|YP_184509.1| - 0.93 9.8 4.4 7.1 6.9 0.3 3.0 2 1 1 3 3 3 0 Polyribonucleotide nucleotidyltransferase, RNA binding domain THUMP PF02926.12 gi|57642032|ref|YP_184510.1| - 6.9e-25 87.6 0.2 8.2e-25 87.3 0.2 1.1 1 0 0 1 1 1 1 THUMP domain Arch_ATPase PF01637.13 gi|57642033|ref|YP_184511.1| - 7.2e-07 29.1 0.1 1.3e-06 28.2 0.1 1.4 1 0 0 1 1 1 1 Archaeal ATPase AAA_22 PF13401.1 gi|57642033|ref|YP_184511.1| - 1.8e-06 28.1 0.0 4.1e-06 26.9 0.0 1.6 1 0 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|57642033|ref|YP_184511.1| - 3.4e-06 26.8 0.1 0.0069 16.0 0.0 2.8 3 0 0 3 3 3 2 NACHT domain AAA_14 PF13173.1 gi|57642033|ref|YP_184511.1| - 0.00023 21.0 0.5 0.014 15.2 0.3 2.6 1 1 0 1 1 1 1 AAA domain NB-ARC PF00931.17 gi|57642033|ref|YP_184511.1| - 0.00061 18.7 0.0 0.049 12.4 0.0 2.1 2 0 0 2 2 2 1 NB-ARC domain TrmB PF01978.14 gi|57642033|ref|YP_184511.1| - 0.00076 19.1 0.0 0.16 11.6 0.0 2.7 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB AAA PF00004.24 gi|57642033|ref|YP_184511.1| - 0.0024 18.0 0.1 0.015 15.4 0.0 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|57642033|ref|YP_184511.1| - 0.0036 17.3 0.0 0.0075 16.2 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain CLAMP PF14769.1 gi|57642033|ref|YP_184511.1| - 0.036 14.1 0.2 0.09 12.9 0.1 1.7 1 0 0 1 1 1 0 Flagellar C1a complex subunit C1a-32 AAA_35 PF14516.1 gi|57642033|ref|YP_184511.1| - 0.045 12.3 0.0 0.074 11.6 0.0 1.3 1 0 0 1 1 1 0 AAA-like domain AAA_10 PF12846.2 gi|57642033|ref|YP_184511.1| - 0.051 13.0 0.1 0.076 12.4 0.1 1.5 1 1 0 1 1 1 0 AAA-like domain ABC_tran PF00005.22 gi|57642033|ref|YP_184511.1| - 0.099 12.9 0.0 0.17 12.1 0.0 1.4 1 0 0 1 1 1 0 ABC transporter AAA_30 PF13604.1 gi|57642033|ref|YP_184511.1| - 0.1 12.1 0.0 0.18 11.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain TrwB_AAD_bind PF10412.4 gi|57642033|ref|YP_184511.1| - 0.19 10.3 0.1 0.32 9.5 0.1 1.3 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain DUF457 PF04307.9 gi|57642034|ref|YP_184512.1| - 1.4e-13 50.5 9.1 1.7e-13 50.2 6.3 1.1 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) Zn_dep_PLPC PF00882.13 gi|57642034|ref|YP_184512.1| - 0.015 14.9 0.0 0.14 11.8 0.0 2.0 1 1 0 1 1 1 0 Zinc dependent phospholipase C QueT PF06177.6 gi|57642034|ref|YP_184512.1| - 0.46 10.4 7.2 1.8 8.5 0.2 2.4 2 1 0 2 2 2 0 QueT transporter DUF360 PF04020.8 gi|57642034|ref|YP_184512.1| - 4.8 7.5 12.0 0.48 10.8 4.1 2.2 2 1 0 2 2 2 0 Membrane protein of unknown function Pyr_redox_2 PF07992.9 gi|57642035|ref|YP_184513.1| - 1e-38 133.2 0.0 2.1e-38 132.2 0.0 2.0 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|57642035|ref|YP_184513.1| - 7.6e-21 74.3 8.9 3.6e-17 62.5 0.6 3.8 3 1 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|57642035|ref|YP_184513.1| - 2.6e-17 63.5 0.2 3.2e-13 50.2 0.0 2.5 2 1 1 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|57642035|ref|YP_184513.1| - 1.1e-14 54.1 0.9 1.6e-05 23.9 0.1 4.1 4 0 0 4 4 4 4 Glucose inhibited division protein A DAO PF01266.19 gi|57642035|ref|YP_184513.1| - 3.2e-13 49.3 7.2 0.00011 21.2 0.0 3.6 3 1 1 4 4 4 3 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|57642035|ref|YP_184513.1| - 2.3e-10 39.8 4.1 3.4e-06 26.1 0.2 4.0 3 1 0 4 4 4 2 FAD binding domain FAD_binding_3 PF01494.14 gi|57642035|ref|YP_184513.1| - 3.9e-10 39.3 0.5 5.2e-05 22.4 0.0 2.5 2 0 0 2 2 2 2 FAD binding domain FAD_oxidored PF12831.2 gi|57642035|ref|YP_184513.1| - 1.5e-09 37.4 1.7 1.7e-07 30.6 0.0 2.8 2 1 1 3 3 3 1 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|57642035|ref|YP_184513.1| - 2.5e-09 36.1 0.5 0.00015 20.4 0.1 3.6 4 0 0 4 4 4 3 HI0933-like protein NAD_binding_7 PF13241.1 gi|57642035|ref|YP_184513.1| - 1e-07 32.1 1.1 0.00099 19.3 0.1 3.1 3 0 0 3 3 3 2 Putative NAD(P)-binding Thi4 PF01946.12 gi|57642035|ref|YP_184513.1| - 6.4e-07 28.6 0.1 0.00014 21.0 0.0 2.3 2 0 0 2 2 2 1 Thi4 family NAD_binding_8 PF13450.1 gi|57642035|ref|YP_184513.1| - 7.7e-07 29.0 0.2 0.0002 21.3 0.0 2.5 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain K_oxygenase PF13434.1 gi|57642035|ref|YP_184513.1| - 2.1e-05 23.6 0.1 0.0015 17.5 0.0 2.9 2 1 0 3 3 3 1 L-lysine 6-monooxygenase (NADPH-requiring) Shikimate_DH PF01488.15 gi|57642035|ref|YP_184513.1| - 7e-05 22.9 2.3 0.02 14.9 0.1 3.4 4 1 0 4 4 2 1 Shikimate / quinate 5-dehydrogenase Lycopene_cycl PF05834.7 gi|57642035|ref|YP_184513.1| - 0.00038 19.4 0.6 0.22 10.3 0.1 3.1 3 0 0 3 3 3 1 Lycopene cyclase protein AlaDh_PNT_C PF01262.16 gi|57642035|ref|YP_184513.1| - 0.00072 19.1 0.6 0.6 9.6 0.0 2.8 3 0 0 3 3 3 2 Alanine dehydrogenase/PNT, C-terminal domain PALP PF00291.20 gi|57642035|ref|YP_184513.1| - 0.0015 17.8 0.0 0.027 13.7 0.0 2.5 3 0 0 3 3 3 1 Pyridoxal-phosphate dependent enzyme IlvN PF07991.7 gi|57642035|ref|YP_184513.1| - 0.0021 17.4 0.1 0.0051 16.1 0.1 1.7 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain Trp_halogenase PF04820.9 gi|57642035|ref|YP_184513.1| - 0.0035 16.0 3.4 0.16 10.5 0.1 2.6 2 1 1 3 3 3 1 Tryptophan halogenase ADH_zinc_N PF00107.21 gi|57642035|ref|YP_184513.1| - 0.0049 16.4 0.7 6 6.4 0.0 3.6 2 1 1 3 3 3 0 Zinc-binding dehydrogenase CPSase_L_chain PF00289.17 gi|57642035|ref|YP_184513.1| - 0.01 15.9 0.1 7.5 6.7 0.0 3.1 3 0 0 3 3 3 0 Carbamoyl-phosphate synthase L chain, N-terminal domain NAD_binding_9 PF13454.1 gi|57642035|ref|YP_184513.1| - 0.011 15.5 0.6 1.3 8.8 0.0 2.6 2 0 0 2 2 2 0 FAD-NAD(P)-binding IPPT PF01715.12 gi|57642035|ref|YP_184513.1| - 0.018 14.0 0.0 0.22 10.5 0.0 2.1 2 0 0 2 2 2 0 IPP transferase 2-Hacid_dh_C PF02826.14 gi|57642035|ref|YP_184513.1| - 0.019 14.0 0.9 0.87 8.7 0.0 3.0 3 0 0 3 3 3 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Oxidored_nitro PF00148.14 gi|57642035|ref|YP_184513.1| - 0.025 13.2 0.0 0.062 11.9 0.0 1.5 1 1 0 1 1 1 0 Nitrogenase component 1 type Oxidoreductase 3HCDH_N PF02737.13 gi|57642035|ref|YP_184513.1| - 0.045 13.4 1.8 5.1 6.7 0.1 2.5 3 0 0 3 3 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ELFV_dehydrog PF00208.16 gi|57642035|ref|YP_184513.1| - 0.079 12.5 0.1 0.18 11.3 0.1 1.7 1 0 0 1 1 1 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase XdhC_C PF13478.1 gi|57642035|ref|YP_184513.1| - 0.11 12.8 0.0 1.1 9.5 0.0 2.2 2 0 0 2 2 2 0 XdhC Rossmann domain ThiF PF00899.16 gi|57642035|ref|YP_184513.1| - 0.26 11.0 1.6 1.7 8.4 0.0 2.9 2 1 0 2 2 2 0 ThiF family Aminotran_3 PF00202.16 gi|57642036|ref|YP_184514.1| - 6.9e-101 337.4 0.0 8.2e-101 337.2 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III ECF-ribofla_trS PF07155.7 gi|57642037|ref|YP_184515.1| - 1.6e-44 151.5 18.5 1.6e-44 151.5 12.8 1.3 2 0 0 2 2 2 1 ECF-type riboflavin transporter, S component DUF3816 PF12822.2 gi|57642037|ref|YP_184515.1| - 0.0002 21.3 20.4 0.0002 21.3 14.1 2.5 1 1 1 2 2 2 1 Protein of unknown function (DUF3816) Glucos_trans_II PF14264.1 gi|57642037|ref|YP_184515.1| - 0.034 13.1 3.1 0.057 12.4 2.2 1.4 1 0 0 1 1 1 0 Glucosyl transferase GtrII DUF4418 PF14387.1 gi|57642037|ref|YP_184515.1| - 0.066 12.9 1.0 0.18 11.5 0.7 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4418) DUF3593 PF12159.3 gi|57642037|ref|YP_184515.1| - 0.083 12.6 0.6 0.18 11.6 0.4 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3593) 5TM-5TMR_LYT PF07694.7 gi|57642037|ref|YP_184515.1| - 0.097 12.0 20.3 0.19 11.0 13.7 1.9 1 1 1 2 2 2 0 5TMR of 5TMR-LYT PMT_2 PF13231.1 gi|57642037|ref|YP_184515.1| - 0.11 12.3 4.8 0.19 11.6 1.8 2.3 2 1 0 2 2 2 0 Dolichyl-phosphate-mannose-protein mannosyltransferase ABC2_membrane_5 PF13346.1 gi|57642037|ref|YP_184515.1| - 7.5 5.7 10.9 0.49 9.6 3.6 1.9 2 0 0 2 2 2 0 ABC-2 family transporter protein DUF1884 PF08967.5 gi|57642038|ref|YP_184516.1| - 1.7e-34 117.7 0.1 2e-34 117.5 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1884) DeoC PF01791.4 gi|57642039|ref|YP_184517.1| - 2.5e-64 216.7 5.6 2.8e-64 216.6 3.9 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase DHO_dh PF01180.16 gi|57642039|ref|YP_184517.1| - 0.00013 21.0 1.6 0.00028 19.9 0.8 1.8 1 1 0 1 1 1 1 Dihydroorotate dehydrogenase NanE PF04131.9 gi|57642039|ref|YP_184517.1| - 0.00027 19.9 1.0 0.00044 19.2 0.7 1.4 1 0 0 1 1 1 1 Putative N-acetylmannosamine-6-phosphate epimerase IMPDH PF00478.20 gi|57642039|ref|YP_184517.1| - 0.0019 17.1 0.5 0.0019 17.1 0.3 1.1 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain HMGL-like PF00682.14 gi|57642039|ref|YP_184517.1| - 0.0021 17.7 0.6 0.0058 16.3 0.4 1.7 1 1 0 1 1 1 1 HMGL-like AP_endonuc_2 PF01261.19 gi|57642039|ref|YP_184517.1| - 0.0076 15.5 0.3 2.2 7.4 0.0 2.7 1 1 1 2 2 2 2 Xylose isomerase-like TIM barrel DUF2802 PF10975.3 gi|57642039|ref|YP_184517.1| - 0.013 15.2 1.2 1.5 8.6 0.0 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF2802) His_biosynth PF00977.16 gi|57642039|ref|YP_184517.1| - 0.015 14.5 1.1 0.091 12.0 0.1 2.2 1 1 0 2 2 2 0 Histidine biosynthesis protein Glyco_hydro_97 PF10566.4 gi|57642039|ref|YP_184517.1| - 0.017 14.2 0.2 0.077 12.0 0.0 1.9 2 0 0 2 2 2 0 Glycoside hydrolase 97 PLDc_2 PF13091.1 gi|57642039|ref|YP_184517.1| - 0.091 12.5 0.0 0.15 11.7 0.0 1.4 1 0 0 1 1 1 0 PLD-like domain Enolase_C PF00113.17 gi|57642041|ref|YP_184519.1| - 1.9e-130 434.1 0.1 2.4e-130 433.8 0.0 1.1 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.11 gi|57642041|ref|YP_184519.1| - 1.7e-60 202.7 0.1 2.6e-60 202.1 0.1 1.3 1 0 0 1 1 1 1 Enolase, N-terminal domain MAAL_C PF07476.6 gi|57642041|ref|YP_184519.1| - 0.00021 20.3 0.1 0.0006 18.8 0.0 1.7 2 0 0 2 2 2 1 Methylaspartate ammonia-lyase C-terminus MR_MLE PF01188.16 gi|57642041|ref|YP_184519.1| - 0.027 15.0 0.0 0.089 13.3 0.0 2.0 2 0 0 2 2 2 0 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain PadR PF03551.9 gi|57642042|ref|YP_184520.1| - 4.7e-18 64.7 0.6 4.7e-18 64.7 0.4 1.7 2 0 0 2 2 2 1 Transcriptional regulator PadR-like family HTH_34 PF13601.1 gi|57642042|ref|YP_184520.1| - 5.2e-05 23.1 0.0 0.00062 19.7 0.0 2.3 2 1 1 3 3 2 1 Winged helix DNA-binding domain AphA_like PF14557.1 gi|57642042|ref|YP_184520.1| - 0.00042 19.9 0.0 0.00063 19.3 0.0 1.3 1 0 0 1 1 1 1 Putative AphA-like transcriptional regulator HTH_45 PF14947.1 gi|57642042|ref|YP_184520.1| - 0.0026 17.5 1.7 0.0076 16.0 0.0 2.5 3 0 0 3 3 3 1 Winged helix-turn-helix HxlR PF01638.12 gi|57642042|ref|YP_184520.1| - 0.019 14.5 0.0 0.041 13.5 0.0 1.7 1 0 0 1 1 1 0 HxlR-like helix-turn-helix CortBP2 PF09727.4 gi|57642042|ref|YP_184520.1| - 0.036 13.5 3.1 0.058 12.8 2.2 1.3 1 0 0 1 1 1 0 Cortactin-binding protein-2 HTH_27 PF13463.1 gi|57642042|ref|YP_184520.1| - 0.13 12.6 0.2 0.55 10.5 0.0 2.2 2 1 1 3 3 3 0 Winged helix DNA-binding domain L27_2 PF09045.5 gi|57642042|ref|YP_184520.1| - 0.21 11.1 0.9 0.52 9.8 0.5 1.9 1 1 0 1 1 1 0 L27_2 MMPL PF03176.10 gi|57642043|ref|YP_184521.1| - 3.4e-64 216.6 11.8 1.4e-36 125.8 0.8 3.3 3 0 0 3 3 3 3 MMPL family SRI PF08236.6 gi|57642043|ref|YP_184521.1| - 0.14 12.1 0.1 1.3 8.9 0.0 2.4 1 1 1 2 2 2 0 SRI (Set2 Rpb1 interacting) domain Radical_SAM PF04055.16 gi|57642044|ref|YP_184522.1| - 6e-13 49.3 0.7 1.7e-08 34.7 0.1 2.5 1 1 2 3 3 3 2 Radical SAM superfamily DUF1107 PF06526.7 gi|57642044|ref|YP_184522.1| - 0.095 12.5 0.0 0.19 11.5 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1107) HTH_24 PF13412.1 gi|57642045|ref|YP_184523.1| - 1.7e-17 62.4 1.4 5.7e-15 54.4 0.4 2.2 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding AsnC_trans_reg PF01037.16 gi|57642045|ref|YP_184523.1| - 1.1e-15 57.1 0.1 1.8e-15 56.3 0.0 1.4 1 0 0 1 1 1 1 AsnC family HTH_AsnC-type PF13404.1 gi|57642045|ref|YP_184523.1| - 5.4e-14 51.4 0.2 4.8e-12 45.2 0.0 2.3 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_27 PF13463.1 gi|57642045|ref|YP_184523.1| - 5e-07 29.9 0.0 9.9e-07 29.0 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|57642045|ref|YP_184523.1| - 9.7e-07 28.3 0.0 2.4e-05 23.9 0.0 2.1 2 0 0 2 2 2 1 MarR family TrmB PF01978.14 gi|57642045|ref|YP_184523.1| - 1e-06 28.3 0.2 2.5e-06 27.0 0.0 1.6 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|57642045|ref|YP_184523.1| - 1e-05 24.9 0.0 6.6e-05 22.4 0.0 1.9 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_8 PF02954.14 gi|57642045|ref|YP_184523.1| - 0.00017 21.0 0.1 0.00028 20.3 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, Fis family MarR PF01047.17 gi|57642045|ref|YP_184523.1| - 0.00034 20.2 0.0 0.00066 19.3 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_23 PF13384.1 gi|57642045|ref|YP_184523.1| - 0.00039 19.9 0.0 0.043 13.4 0.0 2.3 2 0 0 2 2 2 1 Homeodomain-like domain HTH_28 PF13518.1 gi|57642045|ref|YP_184523.1| - 0.00052 19.9 0.0 0.0044 16.9 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_20 PF12840.2 gi|57642045|ref|YP_184523.1| - 0.00055 19.6 0.0 0.0013 18.5 0.0 1.6 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_30 PF13556.1 gi|57642045|ref|YP_184523.1| - 0.0027 17.2 0.1 0.0051 16.3 0.0 1.3 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain HTH_5 PF01022.15 gi|57642045|ref|YP_184523.1| - 0.0038 16.8 0.0 0.0058 16.2 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family B-block_TFIIIC PF04182.7 gi|57642045|ref|YP_184523.1| - 0.0049 16.6 0.0 0.012 15.4 0.0 1.7 1 1 1 2 2 2 1 B-block binding subunit of TFIIIC HTH_38 PF13936.1 gi|57642045|ref|YP_184523.1| - 0.0065 16.0 0.1 4 7.0 0.1 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|57642045|ref|YP_184523.1| - 0.008 15.7 0.1 0.016 14.8 0.0 1.5 1 0 0 1 1 1 1 HTH domain Sigma70_r4 PF04545.11 gi|57642045|ref|YP_184523.1| - 0.011 15.0 0.1 5.8 6.3 0.0 2.6 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_36 PF13730.1 gi|57642045|ref|YP_184523.1| - 0.017 15.2 0.1 0.06 13.4 0.0 1.8 1 1 1 2 2 2 0 Helix-turn-helix domain GntR PF00392.16 gi|57642045|ref|YP_184523.1| - 0.022 14.1 0.0 0.24 10.8 0.0 2.3 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family HTH_10 PF04967.7 gi|57642045|ref|YP_184523.1| - 0.023 14.2 0.0 0.053 13.1 0.0 1.6 2 0 0 2 2 1 0 HTH DNA binding domain DUF2250 PF10007.4 gi|57642045|ref|YP_184523.1| - 0.027 14.3 0.1 0.051 13.4 0.1 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_29 PF13551.1 gi|57642045|ref|YP_184523.1| - 0.041 14.0 0.0 0.057 13.5 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn helix phage_tail_N PF08400.5 gi|57642045|ref|YP_184523.1| - 0.046 13.4 0.0 0.068 12.8 0.0 1.3 1 0 0 1 1 1 0 Prophage tail fibre N-terminal HTH_3 PF01381.17 gi|57642045|ref|YP_184523.1| - 0.046 13.5 0.0 21 5.0 0.0 2.9 3 0 0 3 3 3 0 Helix-turn-helix Sigma70_r4_2 PF08281.7 gi|57642045|ref|YP_184523.1| - 0.063 12.7 0.2 2.1 7.8 0.0 2.7 2 1 1 3 3 3 0 Sigma-70, region 4 HTH_43 PF09904.4 gi|57642045|ref|YP_184523.1| - 0.066 13.0 0.0 0.14 11.9 0.0 1.5 2 0 0 2 2 1 0 Winged helix-turn helix Tn7_Tnp_TnsA_C PF08721.6 gi|57642045|ref|YP_184523.1| - 0.075 13.0 0.0 0.13 12.3 0.0 1.3 1 0 0 1 1 1 0 TnsA endonuclease C terminal HTH_psq PF05225.11 gi|57642045|ref|YP_184523.1| - 0.078 12.5 0.0 0.14 11.7 0.0 1.4 1 0 0 1 1 1 0 helix-turn-helix, Psq domain HTH_19 PF12844.2 gi|57642045|ref|YP_184523.1| - 0.096 12.7 0.0 20 5.3 0.0 2.8 3 0 0 3 3 3 0 Helix-turn-helix domain Mga PF05043.8 gi|57642045|ref|YP_184523.1| - 0.11 12.7 0.0 0.18 12.1 0.0 1.3 1 0 0 1 1 1 0 Mga helix-turn-helix domain Ham1p_like PF01725.11 gi|57642046|ref|YP_184524.1| - 8.2e-57 191.6 0.0 9.3e-57 191.4 0.0 1.0 1 0 0 1 1 1 1 Ham1 family Adenosine_kin PF04008.9 gi|57642047|ref|YP_184525.1| - 8.5e-67 223.4 0.9 9.7e-67 223.2 0.6 1.0 1 0 0 1 1 1 1 Adenosine specific kinase HTH_24 PF13412.1 gi|57642048|ref|YP_184526.1| - 2.8e-11 42.6 0.1 7.5e-11 41.2 0.0 1.8 2 0 0 2 2 1 1 Winged helix-turn-helix DNA-binding HTH_28 PF13518.1 gi|57642048|ref|YP_184526.1| - 8.1e-07 28.9 0.1 0.00025 20.9 0.0 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_AsnC-type PF13404.1 gi|57642048|ref|YP_184526.1| - 3.2e-06 26.5 0.0 1.8e-05 24.2 0.0 2.1 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_23 PF13384.1 gi|57642048|ref|YP_184526.1| - 0.00021 20.8 0.1 0.0014 18.2 0.0 2.2 2 0 0 2 2 2 1 Homeodomain-like domain HTH_IclR PF09339.5 gi|57642048|ref|YP_184526.1| - 0.00028 20.4 0.0 0.00074 19.0 0.0 1.7 2 0 0 2 2 1 1 IclR helix-turn-helix domain MarR PF01047.17 gi|57642048|ref|YP_184526.1| - 0.0003 20.4 0.0 0.00071 19.2 0.0 1.6 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.2 gi|57642048|ref|YP_184526.1| - 0.00036 20.1 0.0 0.0008 19.0 0.0 1.5 1 0 0 1 1 1 1 MarR family Fe_dep_repress PF01325.14 gi|57642048|ref|YP_184526.1| - 0.0005 19.9 0.0 0.004 17.0 0.0 2.2 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_11 PF08279.7 gi|57642048|ref|YP_184526.1| - 0.00063 19.3 0.0 0.0031 17.1 0.0 2.1 2 0 0 2 2 2 1 HTH domain HTH_5 PF01022.15 gi|57642048|ref|YP_184526.1| - 0.0019 17.8 0.0 0.0034 17.0 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|57642048|ref|YP_184526.1| - 0.0021 17.7 0.0 0.0021 17.7 0.0 2.8 3 0 0 3 3 3 1 Sugar-specific transcriptional regulator TrmB HTH_38 PF13936.1 gi|57642048|ref|YP_184526.1| - 0.0022 17.5 0.0 0.026 14.0 0.0 2.7 3 0 0 3 3 3 1 Helix-turn-helix domain GntR PF00392.16 gi|57642048|ref|YP_184526.1| - 0.0022 17.4 0.0 0.0044 16.4 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_29 PF13551.1 gi|57642048|ref|YP_184526.1| - 0.0053 16.8 0.0 0.02 15.0 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn helix Sigma70_r4_2 PF08281.7 gi|57642048|ref|YP_184526.1| - 0.0053 16.1 0.0 0.012 15.0 0.0 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_36 PF13730.1 gi|57642048|ref|YP_184526.1| - 0.0061 16.6 0.0 0.013 15.5 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain Penicillinase_R PF03965.11 gi|57642048|ref|YP_184526.1| - 0.0089 16.1 0.0 0.016 15.3 0.0 1.4 1 0 0 1 1 1 1 Penicillinase repressor HTH_17 PF12728.2 gi|57642048|ref|YP_184526.1| - 0.02 15.1 0.1 0.08 13.2 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_DeoR PF08220.7 gi|57642048|ref|YP_184526.1| - 0.022 14.3 0.0 0.044 13.3 0.0 1.5 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_Mga PF08280.6 gi|57642048|ref|YP_184526.1| - 0.034 13.9 0.0 0.081 12.6 0.0 1.6 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain HTH_Crp_2 PF13545.1 gi|57642048|ref|YP_184526.1| - 0.042 13.6 0.0 0.097 12.4 0.0 1.6 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_10 PF04967.7 gi|57642048|ref|YP_184526.1| - 0.055 13.0 0.0 0.16 11.5 0.0 1.8 1 0 0 1 1 1 0 HTH DNA binding domain HTH_27 PF13463.1 gi|57642048|ref|YP_184526.1| - 0.058 13.7 0.0 0.12 12.7 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_30 PF13556.1 gi|57642048|ref|YP_184526.1| - 0.073 12.6 0.0 0.2 11.2 0.0 1.7 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain HTH_20 PF12840.2 gi|57642048|ref|YP_184526.1| - 0.12 12.2 0.0 0.22 11.3 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Gemini_C4 PF01492.12 gi|57642048|ref|YP_184526.1| - 0.15 11.8 0.0 0.26 11.0 0.0 1.3 1 0 0 1 1 1 0 Geminivirus C4 protein Rrf2 PF02082.15 gi|57642048|ref|YP_184526.1| - 0.15 12.1 0.0 0.41 10.7 0.0 1.7 1 0 0 1 1 1 0 Transcriptional regulator SPASM PF13186.1 gi|57642049|ref|YP_184527.1| - 3.3e-08 33.7 0.0 7.4e-08 32.6 0.0 1.6 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain MoaE PF02391.12 gi|57642050|ref|YP_184528.1| - 1.1e-39 134.8 0.1 1.2e-39 134.7 0.1 1.0 1 0 0 1 1 1 1 MoaE protein DUF2634 PF10934.3 gi|57642050|ref|YP_184528.1| - 0.064 13.0 0.0 0.087 12.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2634) Rep_fac-A_3 PF08661.6 gi|57642051|ref|YP_184529.1| - 0.074 12.9 0.9 1.4 8.8 0.1 2.3 2 0 0 2 2 2 0 Replication factor A protein 3 Pectate_lyase_2 PF06917.7 gi|57642051|ref|YP_184529.1| - 0.1 10.8 0.0 0.12 10.5 0.0 1.1 1 0 0 1 1 1 0 Periplasmic pectate lyase ThiF PF00899.16 gi|57642052|ref|YP_184530.1| - 1.7e-44 150.9 0.0 2.9e-44 150.1 0.0 1.4 1 0 0 1 1 1 1 ThiF family MoeZ_MoeB PF05237.8 gi|57642052|ref|YP_184530.1| - 3.3e-12 45.8 0.0 5.2e-12 45.1 0.0 1.4 1 0 0 1 1 1 1 MoeZ/MoeB domain ApbA PF02558.11 gi|57642052|ref|YP_184530.1| - 6.2e-05 22.4 0.0 9.6e-05 21.8 0.0 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA 2-Hacid_dh_C PF02826.14 gi|57642052|ref|YP_184530.1| - 0.00013 21.1 0.1 0.0069 15.5 0.0 2.3 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Saccharop_dh PF03435.13 gi|57642052|ref|YP_184530.1| - 0.00019 20.5 0.0 0.00025 20.1 0.0 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase 3HCDH_N PF02737.13 gi|57642052|ref|YP_184530.1| - 0.0002 21.0 0.0 0.00041 20.0 0.0 1.5 1 1 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Shikimate_DH PF01488.15 gi|57642052|ref|YP_184530.1| - 0.00059 19.9 0.1 0.011 15.8 0.0 2.3 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase UDPG_MGDP_dh_N PF03721.9 gi|57642052|ref|YP_184530.1| - 0.00075 18.9 0.0 0.0022 17.3 0.0 1.8 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_7 PF13241.1 gi|57642052|ref|YP_184530.1| - 0.0021 18.2 0.0 0.004 17.4 0.0 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding DAO PF01266.19 gi|57642052|ref|YP_184530.1| - 0.0035 16.3 0.0 0.0048 15.8 0.0 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase THF_DHG_CYH_C PF02882.14 gi|57642052|ref|YP_184530.1| - 0.012 14.6 0.2 0.062 12.3 0.0 2.1 3 0 0 3 3 3 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Ldh_1_N PF00056.18 gi|57642052|ref|YP_184530.1| - 0.022 14.6 4.7 0.044 13.5 0.2 2.8 2 1 0 3 3 3 0 lactate/malate dehydrogenase, NAD binding domain ELFV_dehydrog PF00208.16 gi|57642052|ref|YP_184530.1| - 0.069 12.7 0.4 0.13 11.8 0.3 1.6 1 1 0 1 1 1 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase NAD_Gly3P_dh_N PF01210.18 gi|57642052|ref|YP_184530.1| - 0.098 12.3 0.2 0.27 10.9 0.1 2.0 1 1 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ThiS PF02597.15 gi|57642053|ref|YP_184531.1| - 8.5e-24 83.7 0.1 9.6e-24 83.6 0.1 1.0 1 0 0 1 1 1 1 ThiS family Ub-Mut7C PF14451.1 gi|57642053|ref|YP_184531.1| - 0.003 17.0 0.0 0.016 14.7 0.0 1.9 2 0 0 2 2 2 1 Mut7-C ubiquitin Ub-RnfH PF03658.9 gi|57642053|ref|YP_184531.1| - 0.0034 17.2 0.1 0.01 15.7 0.0 1.8 1 1 0 1 1 1 1 RnfH family Ubiquitin TGS PF02824.16 gi|57642053|ref|YP_184531.1| - 0.015 15.1 0.1 0.24 11.2 0.0 2.1 2 0 0 2 2 2 0 TGS domain Lambda_tail_I PF06805.7 gi|57642053|ref|YP_184531.1| - 0.02 14.6 0.0 0.028 14.2 0.0 1.4 1 1 0 1 1 1 0 Bacteriophage lambda tail assembly protein I SLBB PF10531.4 gi|57642053|ref|YP_184531.1| - 0.09 12.6 0.1 3.2 7.7 0.0 2.2 2 0 0 2 2 2 0 SLBB domain DUF46 PF01864.12 gi|57642054|ref|YP_184532.1| - 9.8e-75 250.2 3.6 1.1e-74 250.0 2.5 1.0 1 0 0 1 1 1 1 Putative integral membrane protein DUF46 CTP_transf_1 PF01148.15 gi|57642054|ref|YP_184532.1| - 5.2e-12 45.9 0.4 5.2e-12 45.9 0.3 2.1 3 0 0 3 3 3 1 Cytidylyltransferase family CytB6-F_Fe-S PF08802.5 gi|57642054|ref|YP_184532.1| - 0.025 14.5 0.5 0.076 13.0 0.0 2.1 2 0 0 2 2 2 0 Cytochrome B6-F complex Fe-S subunit LEA_2 PF03168.8 gi|57642055|ref|YP_184533.1| - 2e-15 57.0 0.4 1.3e-14 54.3 0.3 2.1 2 0 0 2 2 2 1 Late embryogenesis abundant protein DUF3201 PF11447.3 gi|57642056|ref|YP_184534.1| - 5.2e-73 243.3 7.9 6.5e-73 243.0 5.5 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3201) Nol1_Nop2_Fmu PF01189.12 gi|57642057|ref|YP_184535.1| - 5.9e-53 180.0 0.0 8.2e-52 176.3 0.0 2.0 2 0 0 2 2 2 1 NOL1/NOP2/sun family PUA PF01472.15 gi|57642057|ref|YP_184535.1| - 2e-19 69.0 0.3 4.2e-19 68.0 0.2 1.5 1 0 0 1 1 1 1 PUA domain Methyltransf_31 PF13847.1 gi|57642057|ref|YP_184535.1| - 3.3e-12 46.2 0.0 4.7e-12 45.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|57642057|ref|YP_184535.1| - 3.7e-07 30.1 0.0 5.7e-07 29.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|57642057|ref|YP_184535.1| - 2.8e-06 27.8 0.0 5e-06 27.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|57642057|ref|YP_184535.1| - 8.4e-06 25.0 0.0 1.4e-05 24.3 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_25 PF13649.1 gi|57642057|ref|YP_184535.1| - 4.5e-05 23.7 0.0 8.7e-05 22.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_4 PF02390.12 gi|57642057|ref|YP_184535.1| - 8e-05 21.7 0.0 0.00037 19.6 0.0 1.9 2 0 0 2 2 2 1 Putative methyltransferase MTS PF05175.9 gi|57642057|ref|YP_184535.1| - 0.00063 19.1 0.0 0.00096 18.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain PCMT PF01135.14 gi|57642057|ref|YP_184535.1| - 0.00067 19.2 0.0 0.0013 18.3 0.0 1.4 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) HTH_12 PF08461.5 gi|57642057|ref|YP_184535.1| - 0.0035 17.0 0.4 0.012 15.3 0.3 1.9 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain Methyltransf_11 PF08241.7 gi|57642057|ref|YP_184535.1| - 0.0065 16.9 0.0 0.015 15.7 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain FtsJ PF01728.14 gi|57642057|ref|YP_184535.1| - 0.0071 16.3 0.0 0.017 15.0 0.0 1.7 1 1 0 1 1 1 1 FtsJ-like methyltransferase Fibrillarin PF01269.12 gi|57642057|ref|YP_184535.1| - 0.036 12.9 0.0 0.071 12.0 0.0 1.4 1 0 0 1 1 1 0 Fibrillarin Methyltransf_15 PF09445.5 gi|57642057|ref|YP_184535.1| - 0.036 13.6 0.0 0.049 13.1 0.0 1.3 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase SEA PF01390.15 gi|57642057|ref|YP_184535.1| - 0.055 13.1 0.0 0.13 11.9 0.0 1.5 1 0 0 1 1 1 0 SEA domain Methyltransf_24 PF13578.1 gi|57642057|ref|YP_184535.1| - 0.08 13.7 0.0 0.33 11.7 0.0 2.0 1 1 0 1 1 1 0 Methyltransferase domain RrnaAD PF00398.15 gi|57642057|ref|YP_184535.1| - 0.11 11.5 0.0 0.2 10.6 0.0 1.3 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase UPF0104 PF03706.8 gi|57642058|ref|YP_184536.1| - 1.8e-45 155.5 26.6 2.3e-45 155.1 18.5 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0104) NAD_kinase PF01513.16 gi|57642059|ref|YP_184537.1| - 3.5e-67 226.1 0.2 4.4e-67 225.8 0.1 1.1 1 0 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.19 gi|57642059|ref|YP_184537.1| - 0.023 14.1 0.0 0.036 13.4 0.0 1.4 1 0 0 1 1 1 0 Diacylglycerol kinase catalytic domain DUF835 PF05763.7 gi|57642060|ref|YP_184538.1| - 4.4e-40 136.3 0.0 6e-40 135.9 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF835) DUF3397 PF11877.3 gi|57642060|ref|YP_184538.1| - 0.31 11.0 6.3 0.7 9.9 4.3 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF3397) Peptidase_M22 PF00814.20 gi|57642061|ref|YP_184539.1| - 3.5e-95 318.5 0.1 4.1e-95 318.2 0.1 1.0 1 0 0 1 1 1 1 Glycoprotease family Succ_CoA_lig PF13607.1 gi|57642062|ref|YP_184540.1| - 1e-58 196.8 1.4 1.4e-57 193.1 0.3 2.6 3 0 0 3 3 3 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.1 gi|57642062|ref|YP_184540.1| - 8.5e-21 74.2 0.8 1e-18 67.6 0.1 2.7 2 1 0 2 2 2 1 CoA binding domain CoA_binding PF02629.14 gi|57642062|ref|YP_184540.1| - 1.6e-07 31.7 1.3 1.6e-07 31.7 0.9 2.9 3 0 0 3 3 3 1 CoA binding domain Hydrolase_6 PF13344.1 gi|57642062|ref|YP_184540.1| - 0.01 15.7 0.0 0.033 14.0 0.0 1.8 1 0 0 1 1 1 0 Haloacid dehalogenase-like hydrolase F420_oxidored PF03807.12 gi|57642062|ref|YP_184540.1| - 0.041 14.2 0.5 0.21 12.0 0.0 2.4 2 1 1 3 3 3 0 NADP oxidoreductase coenzyme F420-dependent CTP_transf_2 PF01467.21 gi|57642063|ref|YP_184541.1| - 4.3e-16 59.3 0.0 7.1e-16 58.6 0.0 1.3 1 1 0 1 1 1 1 Cytidylyltransferase FAD_syn PF06574.7 gi|57642063|ref|YP_184541.1| - 0.00034 20.2 0.0 0.00047 19.8 0.0 1.3 1 0 0 1 1 1 1 FAD synthetase TIM PF00121.13 gi|57642064|ref|YP_184542.1| - 9.6e-27 93.5 0.5 1.7e-24 86.2 0.3 2.0 1 1 0 1 1 1 1 Triosephosphate isomerase ThiG PF05690.9 gi|57642064|ref|YP_184542.1| - 3.6e-06 26.2 1.8 5e-06 25.7 0.1 1.9 1 1 0 2 2 2 1 Thiazole biosynthesis protein ThiG IGPS PF00218.16 gi|57642064|ref|YP_184542.1| - 0.00017 20.7 0.1 0.0003 19.9 0.1 1.5 1 1 0 1 1 1 1 Indole-3-glycerol phosphate synthase NMO PF03060.10 gi|57642064|ref|YP_184542.1| - 0.00058 19.1 3.2 0.00075 18.7 2.2 1.2 1 1 0 1 1 1 1 Nitronate monooxygenase FMN_dh PF01070.13 gi|57642064|ref|YP_184542.1| - 0.0011 17.8 0.7 0.0022 16.8 0.1 1.7 2 0 0 2 2 2 1 FMN-dependent dehydrogenase Trp_syntA PF00290.15 gi|57642064|ref|YP_184542.1| - 0.0028 16.2 0.2 0.0052 15.3 0.1 1.4 1 0 0 1 1 1 1 Tryptophan synthase alpha chain PcrB PF01884.12 gi|57642064|ref|YP_184542.1| - 0.031 13.5 1.0 0.068 12.4 0.5 1.7 1 1 0 1 1 1 0 PcrB family DHO_dh PF01180.16 gi|57642064|ref|YP_184542.1| - 0.033 13.1 0.1 0.047 12.6 0.1 1.3 1 0 0 1 1 1 0 Dihydroorotate dehydrogenase NanE PF04131.9 gi|57642064|ref|YP_184542.1| - 0.052 12.5 0.7 0.12 11.3 0.5 1.7 1 1 0 1 1 1 0 Putative N-acetylmannosamine-6-phosphate epimerase TIM-br_sig_trns PF09370.5 gi|57642064|ref|YP_184542.1| - 0.053 12.5 0.1 0.1 11.6 0.1 1.5 1 1 0 1 1 1 0 TIM-barrel signal transduction protein His_biosynth PF00977.16 gi|57642064|ref|YP_184542.1| - 0.067 12.4 0.2 0.25 10.5 0.0 2.0 2 0 0 2 2 2 0 Histidine biosynthesis protein CobA_CobO_BtuR PF02572.10 gi|57642065|ref|YP_184543.1| - 2.1e-59 200.0 0.0 2.3e-59 199.8 0.0 1.0 1 0 0 1 1 1 1 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP IstB_IS21 PF01695.12 gi|57642065|ref|YP_184543.1| - 0.021 14.2 0.2 0.91 8.9 0.0 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein CbiA PF01656.18 gi|57642065|ref|YP_184543.1| - 0.036 13.4 0.0 0.049 13.0 0.0 1.4 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain RecA PF00154.16 gi|57642065|ref|YP_184543.1| - 0.12 11.4 0.2 0.83 8.6 0.2 1.9 1 1 0 1 1 1 0 recA bacterial DNA recombination protein UPF0147 PF03685.8 gi|57642066|ref|YP_184544.1| - 1e-33 115.0 2.6 1.1e-33 114.9 1.8 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0147) Aldolase_II PF00596.16 gi|57642067|ref|YP_184545.1| - 2.6e-49 167.3 0.0 2.9e-49 167.1 0.0 1.0 1 0 0 1 1 1 1 Class II Aldolase and Adducin N-terminal domain zinc-ribbons_6 PF07191.7 gi|57642068|ref|YP_184546.1| - 0.013 15.2 0.1 0.02 14.6 0.1 1.2 1 0 0 1 1 1 0 zinc-ribbons Ribosomal_L37e PF01907.14 gi|57642068|ref|YP_184546.1| - 0.037 13.8 0.2 0.064 13.0 0.1 1.3 1 0 0 1 1 1 0 Ribosomal protein L37e FYVE PF01363.16 gi|57642068|ref|YP_184546.1| - 0.056 13.3 0.2 0.08 12.8 0.1 1.2 1 0 0 1 1 1 0 FYVE zinc finger AsnC_trans_reg PF01037.16 gi|57642069|ref|YP_184547.1| - 4.2e-16 58.4 0.0 8.3e-16 57.4 0.0 1.4 1 0 0 1 1 1 1 AsnC family HTH_AsnC-type PF13404.1 gi|57642069|ref|YP_184547.1| - 1e-14 53.7 0.2 1.7e-14 53.0 0.1 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.1 gi|57642069|ref|YP_184547.1| - 1.9e-14 52.7 0.1 3.1e-14 52.0 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.7 gi|57642069|ref|YP_184547.1| - 2.8e-09 36.4 0.1 4.5e-09 35.8 0.0 1.3 1 0 0 1 1 1 1 HTH domain HTH_Mga PF08280.6 gi|57642069|ref|YP_184547.1| - 1.2e-07 31.3 0.0 2.5e-07 30.3 0.0 1.5 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain HTH_20 PF12840.2 gi|57642069|ref|YP_184547.1| - 7.2e-07 28.9 0.0 2.3e-06 27.3 0.0 1.8 2 0 0 2 2 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|57642069|ref|YP_184547.1| - 2.5e-05 23.8 0.0 4.5e-05 23.0 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|57642069|ref|YP_184547.1| - 5.1e-05 23.5 0.1 0.00019 21.6 0.0 2.0 2 0 0 2 2 2 1 Winged helix DNA-binding domain TFIIE_alpha PF02002.12 gi|57642069|ref|YP_184547.1| - 5.2e-05 22.6 0.2 0.01 15.2 0.1 2.1 1 1 1 2 2 2 1 TFIIE alpha subunit HTH_DeoR PF08220.7 gi|57642069|ref|YP_184547.1| - 5.6e-05 22.6 0.1 8.9e-05 21.9 0.0 1.3 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HxlR PF01638.12 gi|57642069|ref|YP_184547.1| - 7.4e-05 22.3 0.0 0.00014 21.4 0.0 1.5 2 0 0 2 2 1 1 HxlR-like helix-turn-helix Sigma70_r4 PF04545.11 gi|57642069|ref|YP_184547.1| - 8.9e-05 21.7 0.0 0.00017 20.8 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4_2 PF08281.7 gi|57642069|ref|YP_184547.1| - 0.00016 21.0 0.2 0.00058 19.2 0.1 1.9 1 1 0 1 1 1 1 Sigma-70, region 4 HTH_IclR PF09339.5 gi|57642069|ref|YP_184547.1| - 0.00059 19.3 0.0 0.0011 18.4 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_28 PF13518.1 gi|57642069|ref|YP_184547.1| - 0.0006 19.7 0.0 0.0013 18.7 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.17 gi|57642069|ref|YP_184547.1| - 0.00078 19.0 0.1 0.0021 17.7 0.0 1.7 2 0 0 2 2 2 1 MarR family TrmB PF01978.14 gi|57642069|ref|YP_184547.1| - 0.0012 18.5 0.2 0.0033 17.1 0.1 1.8 1 1 1 2 2 2 1 Sugar-specific transcriptional regulator TrmB RepL PF05732.6 gi|57642069|ref|YP_184547.1| - 0.0015 17.7 0.1 0.0032 16.6 0.0 1.5 1 1 0 1 1 1 1 Firmicute plasmid replication protein (RepL) Rrf2 PF02082.15 gi|57642069|ref|YP_184547.1| - 0.0017 18.4 0.0 0.0047 17.0 0.0 1.7 2 0 0 2 2 1 1 Transcriptional regulator HTH_23 PF13384.1 gi|57642069|ref|YP_184547.1| - 0.0019 17.8 0.0 0.0031 17.1 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain HTH_5 PF01022.15 gi|57642069|ref|YP_184547.1| - 0.004 16.7 0.0 0.0077 15.8 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_Tnp_ISL3 PF13542.1 gi|57642069|ref|YP_184547.1| - 0.0046 16.1 0.0 0.0085 15.2 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 GerE PF00196.14 gi|57642069|ref|YP_184547.1| - 0.0061 15.8 0.0 0.012 14.8 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family B-block_TFIIIC PF04182.7 gi|57642069|ref|YP_184547.1| - 0.0075 16.0 0.0 0.65 9.8 0.0 2.2 1 1 1 2 2 2 1 B-block binding subunit of TFIIIC FaeA PF04703.7 gi|57642069|ref|YP_184547.1| - 0.0097 16.0 0.1 0.018 15.1 0.0 1.4 1 0 0 1 1 1 1 FaeA-like protein DUF4423 PF14394.1 gi|57642069|ref|YP_184547.1| - 0.01 15.3 0.1 0.021 14.3 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_34 PF13601.1 gi|57642069|ref|YP_184547.1| - 0.011 15.7 0.0 0.029 14.3 0.0 1.7 1 1 1 2 2 2 0 Winged helix DNA-binding domain HTH_12 PF08461.5 gi|57642069|ref|YP_184547.1| - 0.012 15.3 0.1 0.036 13.7 0.0 1.9 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain HTH_Crp_2 PF13545.1 gi|57642069|ref|YP_184547.1| - 0.014 15.2 0.0 0.026 14.2 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_36 PF13730.1 gi|57642069|ref|YP_184547.1| - 0.018 15.1 0.0 0.031 14.4 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain DUF2250 PF10007.4 gi|57642069|ref|YP_184547.1| - 0.029 14.2 0.1 0.074 12.9 0.0 1.6 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_29 PF13551.1 gi|57642069|ref|YP_184547.1| - 0.04 14.0 0.0 0.066 13.3 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn helix LexA_DNA_bind PF01726.11 gi|57642069|ref|YP_184547.1| - 0.046 13.2 0.0 0.082 12.4 0.0 1.5 1 0 0 1 1 1 0 LexA DNA binding domain Phage_terminase PF10668.4 gi|57642069|ref|YP_184547.1| - 0.047 13.4 0.2 0.31 10.8 0.0 2.2 3 0 0 3 3 2 0 Phage terminase small subunit DUF2774 PF11242.3 gi|57642069|ref|YP_184547.1| - 0.052 13.5 0.0 0.098 12.6 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2774) Mga PF05043.8 gi|57642069|ref|YP_184547.1| - 0.06 13.6 0.0 0.14 12.4 0.0 1.6 1 0 0 1 1 1 0 Mga helix-turn-helix domain HTH_1 PF00126.22 gi|57642069|ref|YP_184547.1| - 0.093 12.4 0.0 0.15 11.7 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family Fe_dep_repress PF01325.14 gi|57642069|ref|YP_184547.1| - 0.13 12.2 0.0 0.25 11.3 0.0 1.6 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain FeoC PF09012.5 gi|57642069|ref|YP_184547.1| - 0.13 11.9 0.3 0.26 11.0 0.0 1.6 2 0 0 2 2 1 0 FeoC like transcriptional regulator HTH_10 PF04967.7 gi|57642069|ref|YP_184547.1| - 0.14 11.7 0.0 0.32 10.5 0.0 1.6 1 0 0 1 1 1 0 HTH DNA binding domain tRNA_U5-meth_tr PF05958.6 gi|57642070|ref|YP_184548.1| - 4e-27 94.8 0.0 6.7e-18 64.4 0.0 2.1 1 1 1 2 2 2 2 tRNA (Uracil-5-)-methyltransferase Methyltransf_31 PF13847.1 gi|57642070|ref|YP_184548.1| - 7.5e-12 45.0 0.0 2.3e-11 43.5 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|57642070|ref|YP_184548.1| - 1e-11 44.8 0.0 1.7e-11 44.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|57642070|ref|YP_184548.1| - 5.2e-10 38.9 0.0 7.9e-10 38.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_18 PF12847.2 gi|57642070|ref|YP_184548.1| - 9.9e-10 38.9 0.0 5.6e-09 36.5 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain Met_10 PF02475.11 gi|57642070|ref|YP_184548.1| - 9.3e-09 35.1 0.1 1.6e-08 34.3 0.1 1.3 1 0 0 1 1 1 1 Met-10+ like-protein PrmA PF06325.8 gi|57642070|ref|YP_184548.1| - 1.2e-06 27.8 0.2 1.8e-06 27.2 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Cons_hypoth95 PF03602.10 gi|57642070|ref|YP_184548.1| - 3.5e-06 26.5 0.0 6.1e-06 25.7 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_15 PF09445.5 gi|57642070|ref|YP_184548.1| - 1.8e-05 24.3 0.0 3.4e-05 23.4 0.0 1.4 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase UPF0020 PF01170.13 gi|57642070|ref|YP_184548.1| - 4.3e-05 23.1 0.0 7.8e-05 22.3 0.0 1.3 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 TehB PF03848.9 gi|57642070|ref|YP_184548.1| - 4.4e-05 22.7 0.0 6.5e-05 22.1 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_23 PF13489.1 gi|57642070|ref|YP_184548.1| - 4.7e-05 23.1 0.0 0.0001 22.0 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain N6_N4_Mtase PF01555.13 gi|57642070|ref|YP_184548.1| - 0.046 13.1 0.0 0.085 12.3 0.0 1.4 1 0 0 1 1 1 0 DNA methylase RrnaAD PF00398.15 gi|57642070|ref|YP_184548.1| - 0.06 12.3 0.0 0.093 11.7 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Ubie_methyltran PF01209.13 gi|57642070|ref|YP_184548.1| - 0.089 11.8 0.0 0.17 10.9 0.0 1.4 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family Methyltransf_25 PF13649.1 gi|57642070|ref|YP_184548.1| - 0.11 12.8 0.0 0.39 11.1 0.0 2.0 2 0 0 2 2 1 0 Methyltransferase domain DOT1 PF08123.8 gi|57642070|ref|YP_184548.1| - 0.14 11.4 0.0 0.35 10.1 0.0 1.6 2 0 0 2 2 2 0 Histone methylation protein DOT1 CMAS PF02353.15 gi|57642070|ref|YP_184548.1| - 0.17 10.9 0.0 0.28 10.2 0.0 1.3 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Rrf2 PF02082.15 gi|57642071|ref|YP_184549.1| - 0.0006 19.8 0.0 0.0007 19.6 0.0 1.1 1 0 0 1 1 1 1 Transcriptional regulator HTH_20 PF12840.2 gi|57642071|ref|YP_184549.1| - 0.0016 18.2 0.1 0.0027 17.4 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain Fe_dep_repress PF01325.14 gi|57642071|ref|YP_184549.1| - 0.0017 18.2 0.2 0.0027 17.5 0.2 1.3 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain TrmB PF01978.14 gi|57642071|ref|YP_184549.1| - 0.0024 17.5 0.2 0.0029 17.2 0.2 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|57642071|ref|YP_184549.1| - 0.016 14.8 0.1 0.042 13.5 0.1 1.7 1 1 0 1 1 1 0 MarR family MarR PF01047.17 gi|57642071|ref|YP_184549.1| - 0.037 13.7 0.1 0.2 11.3 0.0 1.9 1 1 1 2 2 2 0 MarR family HTH_24 PF13412.1 gi|57642071|ref|YP_184549.1| - 0.041 13.2 0.0 0.054 12.9 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding RPA_C PF08784.6 gi|57642071|ref|YP_184549.1| - 0.057 13.8 0.0 0.069 13.5 0.0 1.2 1 0 0 1 1 1 0 Replication protein A C terminal CbiA PF01656.18 gi|57642072|ref|YP_184550.1| - 3.6e-23 82.0 0.0 4.7e-23 81.6 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|57642072|ref|YP_184550.1| - 1.4e-15 57.5 0.0 7.2e-14 52.0 0.0 2.1 1 1 1 2 2 2 1 AAA domain ArsA_ATPase PF02374.10 gi|57642072|ref|YP_184550.1| - 5.1e-06 25.7 1.6 6.1e-06 25.4 0.4 1.6 2 0 0 2 2 2 1 Anion-transporting ATPase SRP54 PF00448.17 gi|57642072|ref|YP_184550.1| - 0.00011 21.7 0.1 0.0003 20.3 0.0 1.8 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain AAA_17 PF13207.1 gi|57642072|ref|YP_184550.1| - 0.00058 20.6 0.1 0.0016 19.2 0.0 1.9 1 1 0 2 2 2 1 AAA domain APS_kinase PF01583.15 gi|57642072|ref|YP_184550.1| - 0.0008 19.0 0.0 0.0014 18.2 0.0 1.4 1 0 0 1 1 1 1 Adenylylsulphate kinase Zeta_toxin PF06414.7 gi|57642072|ref|YP_184550.1| - 0.0036 16.4 0.0 0.006 15.6 0.0 1.3 1 0 0 1 1 1 1 Zeta toxin KTI12 PF08433.5 gi|57642072|ref|YP_184550.1| - 0.0038 16.4 0.0 0.0063 15.7 0.0 1.3 1 0 0 1 1 1 1 Chromatin associated protein KTI12 Fer4_NifH PF00142.13 gi|57642072|ref|YP_184550.1| - 0.0092 15.1 0.1 0.42 9.7 0.0 2.1 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family MipZ PF09140.6 gi|57642072|ref|YP_184550.1| - 0.011 14.7 0.1 0.035 13.1 0.1 1.8 1 1 0 1 1 1 0 ATPase MipZ AAA_26 PF13500.1 gi|57642072|ref|YP_184550.1| - 0.015 14.8 2.1 0.044 13.3 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.1 gi|57642072|ref|YP_184550.1| - 0.02 15.2 0.1 0.12 12.7 0.1 2.3 1 1 0 1 1 1 0 AAA domain cobW PF02492.14 gi|57642072|ref|YP_184550.1| - 0.035 13.5 0.2 0.11 11.9 0.1 1.8 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain YhjQ PF06564.7 gi|57642072|ref|YP_184550.1| - 0.037 13.3 0.0 0.12 11.7 0.0 2.0 1 1 0 1 1 1 0 YhjQ protein AAA_30 PF13604.1 gi|57642072|ref|YP_184550.1| - 0.04 13.5 0.3 0.082 12.4 0.2 1.5 1 0 0 1 1 1 0 AAA domain ATP_bind_1 PF03029.12 gi|57642072|ref|YP_184550.1| - 0.043 13.3 0.0 0.081 12.4 0.0 1.5 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_10 PF12846.2 gi|57642072|ref|YP_184550.1| - 0.11 11.8 0.6 0.26 10.6 0.2 1.7 2 0 0 2 2 2 0 AAA-like domain Pribosyltran PF00156.22 gi|57642073|ref|YP_184551.1| - 2.1e-19 69.4 1.3 3.3e-19 68.8 0.9 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|57642073|ref|YP_184551.1| - 0.0016 17.6 0.0 0.0018 17.5 0.0 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PrsW-protease PF13367.1 gi|57642074|ref|YP_184552.1| - 3.2e-10 39.5 16.8 6.1e-10 38.5 11.6 1.5 1 0 0 1 1 1 1 Protease prsW family NDUF_B12 PF08122.7 gi|57642074|ref|YP_184552.1| - 0.17 11.6 0.6 0.73 9.6 0.4 2.0 1 0 0 1 1 1 0 NADH-ubiquinone oxidoreductase B12 subunit family DNA_ligase_A_M PF01068.16 gi|57642075|ref|YP_184553.1| - 6.5e-61 205.2 1.4 1.3e-60 204.2 1.0 1.5 1 0 0 1 1 1 1 ATP dependent DNA ligase domain DNA_ligase_A_N PF04675.9 gi|57642075|ref|YP_184553.1| - 1.4e-53 181.3 1.7 6.9e-53 179.0 0.2 2.5 2 1 1 3 3 3 2 DNA ligase N terminus DNA_ligase_A_C PF04679.10 gi|57642075|ref|YP_184553.1| - 9.4e-22 77.2 0.1 3.9e-21 75.2 0.0 2.2 2 0 0 2 2 2 1 ATP dependent DNA ligase C terminal region DNA_ligase_OB_2 PF14743.1 gi|57642075|ref|YP_184553.1| - 0.0018 17.8 0.0 0.0069 16.0 0.0 2.0 1 1 0 1 1 1 1 DNA ligase OB-like domain Peptidase_S7 PF00949.16 gi|57642075|ref|YP_184553.1| - 0.086 12.2 0.0 0.17 11.3 0.0 1.4 1 0 0 1 1 1 0 Peptidase S7, Flavivirus NS3 serine protease UCR_UQCRX_QCR9 PF05365.7 gi|57642075|ref|YP_184553.1| - 0.099 12.2 0.0 0.23 11.0 0.0 1.6 1 0 0 1 1 1 0 Ubiquinol-cytochrome C reductase, UQCRX/QCR9 like TPR_1 PF00515.23 gi|57642075|ref|YP_184553.1| - 0.12 11.9 0.1 0.46 10.1 0.1 2.0 1 0 0 1 1 1 0 Tetratricopeptide repeat GHMP_kinases_N PF00288.21 gi|57642076|ref|YP_184554.1| - 2.6e-06 27.4 0.4 7.9e-06 25.8 0.2 1.9 2 0 0 2 2 2 1 GHMP kinases N terminal domain Na_H_antiporter PF03553.9 gi|57642077|ref|YP_184555.1| - 4.7e-68 229.4 33.9 7.6e-68 228.7 15.8 3.7 3 1 0 3 3 3 1 Na+/H+ antiporter family Na_H_antiport_2 PF13726.1 gi|57642077|ref|YP_184555.1| - 0.14 12.0 3.5 0.17 11.8 0.4 2.6 2 0 0 2 2 2 0 Na+-H+ antiporter family DUF4191 PF13829.1 gi|57642077|ref|YP_184555.1| - 4.4 6.3 12.6 2.1 7.4 0.6 3.0 3 0 0 3 3 3 0 Domain of unknown function (DUF4191) UDG PF03167.14 gi|57642078|ref|YP_184556.1| - 8.8e-44 148.6 0.0 1.1e-43 148.2 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily DUF3631 PF12307.3 gi|57642079|ref|YP_184557.1| - 0.044 13.6 0.1 0.056 13.3 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3631) Radical_SAM PF04055.16 gi|57642080|ref|YP_184558.1| - 1.9e-20 73.6 5.3 2.1e-20 73.5 0.0 3.2 4 0 0 4 4 4 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|57642080|ref|YP_184558.1| - 6.8e-08 32.7 0.0 2.2e-07 31.0 0.0 1.9 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|57642080|ref|YP_184558.1| - 2.2e-07 30.9 1.7 2.3e-07 30.8 0.0 1.9 2 0 0 2 2 2 1 4Fe-4S single cluster domain DUF3213 PF11491.3 gi|57642081|ref|YP_184559.1| - 5.2e-52 173.6 1.6 6.3e-52 173.4 1.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3213) CBM_48 PF02922.13 gi|57642081|ref|YP_184559.1| - 0.11 12.5 0.0 0.14 12.1 0.0 1.2 1 0 0 1 1 1 0 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) MCPsignal PF00015.16 gi|57642082|ref|YP_184560.1| - 1.6e-47 161.8 48.7 9.8e-43 146.1 22.5 3.6 1 1 1 2 2 2 2 Methyl-accepting chemotaxis protein (MCP) signalling domain Cache_1 PF02743.13 gi|57642082|ref|YP_184560.1| - 7.4e-27 92.7 1.0 3.4e-26 90.5 0.3 2.6 2 0 0 2 2 1 1 Cache domain HAMP PF00672.20 gi|57642082|ref|YP_184560.1| - 4.8e-10 39.4 0.2 4.8e-10 39.4 0.1 5.5 5 2 1 6 6 5 2 HAMP domain AAA_13 PF13166.1 gi|57642082|ref|YP_184560.1| - 4e-06 25.6 28.1 0.0008 18.0 5.6 2.1 1 1 1 2 2 2 2 AAA domain Laminin_I PF06008.9 gi|57642082|ref|YP_184560.1| - 2.4e-05 23.8 34.5 0.0046 16.3 5.1 3.7 1 1 3 4 4 4 3 Laminin Domain I DUF948 PF06103.6 gi|57642082|ref|YP_184560.1| - 0.0024 17.6 39.3 0.041 13.7 1.7 6.7 5 2 2 8 8 7 2 Bacterial protein of unknown function (DUF948) Med30 PF11315.3 gi|57642082|ref|YP_184560.1| - 0.0072 16.4 19.3 0.0078 16.3 3.4 4.0 1 1 3 4 4 4 1 Mediator complex subunit 30 Fib_alpha PF08702.5 gi|57642082|ref|YP_184560.1| - 0.0079 16.3 24.3 1.3 9.1 4.4 4.5 2 2 2 4 4 4 4 Fibrinogen alpha/beta chain family TMP_2 PF06791.8 gi|57642082|ref|YP_184560.1| - 0.015 14.9 28.3 0.14 11.7 4.6 4.7 2 1 3 5 5 5 0 Prophage tail length tape measure protein NPV_P10 PF05531.7 gi|57642082|ref|YP_184560.1| - 0.017 15.3 28.6 1.9 8.8 0.1 6.1 3 3 4 7 7 4 0 Nucleopolyhedrovirus P10 protein Syntaxin-6_N PF09177.6 gi|57642082|ref|YP_184560.1| - 0.035 14.5 28.4 1.5 9.2 1.3 5.2 2 1 5 7 7 7 0 Syntaxin 6, N-terminal Katanin_con80 PF13925.1 gi|57642082|ref|YP_184560.1| - 0.08 12.6 0.2 0.08 12.6 0.1 3.5 2 2 1 3 3 3 0 con80 domain of Katanin GTPase_Cys_C PF12631.2 gi|57642082|ref|YP_184560.1| - 0.13 12.7 22.6 0.93 9.9 0.9 6.2 2 1 3 5 5 5 0 Catalytic cysteine-containing C-terminus of GTPase, MnmE Spc7 PF08317.6 gi|57642082|ref|YP_184560.1| - 0.13 10.8 35.5 0.2 10.3 5.1 4.1 2 1 4 6 6 6 0 Spc7 kinetochore protein DUF1664 PF07889.7 gi|57642082|ref|YP_184560.1| - 0.15 11.8 31.8 0.042 13.6 2.0 5.6 3 2 4 7 7 6 0 Protein of unknown function (DUF1664) APG17 PF04108.7 gi|57642082|ref|YP_184560.1| - 0.16 10.7 26.5 0.3 9.8 5.2 3.9 2 2 1 3 3 3 0 Autophagy protein Apg17 Snapin_Pallidin PF14712.1 gi|57642082|ref|YP_184560.1| - 0.23 11.7 18.3 3.4 8.0 0.7 5.0 3 1 1 4 4 4 0 Snapin/Pallidin Sec8_exocyst PF04048.9 gi|57642082|ref|YP_184560.1| - 0.24 11.0 19.2 0.031 13.9 1.6 4.2 2 2 3 5 5 5 0 Sec8 exocyst complex component specific domain DUF3584 PF12128.3 gi|57642082|ref|YP_184560.1| - 0.3 8.3 32.2 0.026 11.8 8.1 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3584) IL13 PF03487.8 gi|57642082|ref|YP_184560.1| - 0.4 10.4 2.3 20 4.9 0.0 3.5 2 1 0 2 2 2 0 Interleukin-13 phiKZ_IP PF12699.2 gi|57642082|ref|YP_184560.1| - 0.61 8.9 28.1 0.11 11.4 2.7 3.8 4 0 0 4 4 4 0 phiKZ-like phage internal head proteins Reo_sigmaC PF04582.7 gi|57642082|ref|YP_184560.1| - 0.75 8.9 21.3 1.7 7.7 4.9 3.1 1 1 3 4 4 4 0 Reovirus sigma C capsid protein Myosin_tail_1 PF01576.14 gi|57642082|ref|YP_184560.1| - 0.93 7.1 35.8 10 3.7 24.7 1.9 1 1 0 1 1 1 0 Myosin tail CheZ PF04344.8 gi|57642082|ref|YP_184560.1| - 1.5 8.3 23.0 0.43 10.1 5.4 3.5 2 2 1 3 3 3 0 Chemotaxis phosphatase, CheZ HisKA_3 PF07730.8 gi|57642082|ref|YP_184560.1| - 2.2 8.6 26.1 5.2 7.4 0.2 7.2 4 2 3 7 7 7 0 Histidine kinase Laminin_II PF06009.7 gi|57642082|ref|YP_184560.1| - 2.5 7.8 40.1 1.7 8.4 3.6 5.7 2 1 5 7 7 6 0 Laminin Domain II YjcZ PF13990.1 gi|57642082|ref|YP_184560.1| - 2.7 7.0 20.2 0.11 11.6 4.3 3.1 1 1 4 5 5 5 0 YjcZ-like protein PLU-1 PF08429.6 gi|57642082|ref|YP_184560.1| - 2.8 6.7 20.7 1.3 7.8 4.7 2.9 1 1 2 3 3 3 0 PLU-1-like protein ATG16 PF08614.6 gi|57642082|ref|YP_184560.1| - 3.4 7.4 30.6 0.89 9.3 8.3 3.6 2 1 0 3 3 3 0 Autophagy protein 16 (ATG16) Prominin PF05478.6 gi|57642082|ref|YP_184560.1| - 4.7 4.6 24.6 0.91 6.9 0.9 3.6 1 1 1 3 3 3 0 Prominin Cache_2 PF08269.6 gi|57642082|ref|YP_184560.1| - 7.3 6.6 14.5 4.4 7.3 0.0 4.6 3 1 1 4 4 3 0 Cache domain Cauli_AT PF03233.8 gi|57642082|ref|YP_184560.1| - 7.7 6.1 17.0 3.7 7.2 0.8 4.5 2 2 2 4 4 4 0 Aphid transmission protein Med15_fungi PF05397.7 gi|57642082|ref|YP_184560.1| - 8.3 6.4 17.0 20 5.1 0.2 5.6 3 2 2 6 6 6 0 Mediator complex subunit 15 Med9 PF07544.8 gi|57642082|ref|YP_184560.1| - 8.5 6.1 15.4 1.1 8.9 1.0 4.4 3 2 0 3 3 3 0 RNA polymerase II transcription mediator complex subunit 9 DUF4546 PF15079.1 gi|57642082|ref|YP_184560.1| - 9.1 5.3 9.2 8.4 5.4 1.7 2.7 1 1 0 2 2 2 0 Domain of unknown function (DUF4546) DUF2139 PF09910.4 gi|57642083|ref|YP_184561.1| - 7.9e-168 557.7 0.4 1.1e-167 557.3 0.2 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2139) LrgA PF03788.9 gi|57642084|ref|YP_184562.1| - 4e-29 100.1 7.0 4.6e-29 99.9 4.8 1.0 1 0 0 1 1 1 1 LrgA family VKOR PF07884.9 gi|57642084|ref|YP_184562.1| - 0.52 10.1 4.4 1.1 9.0 2.9 1.7 1 1 0 1 1 1 0 Vitamin K epoxide reductase family DUF202 PF02656.10 gi|57642084|ref|YP_184562.1| - 5.1 7.3 6.1 12 6.1 2.7 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF202) LrgB PF04172.11 gi|57642085|ref|YP_184563.1| - 3.9e-74 248.4 12.0 4.4e-74 248.2 8.3 1.0 1 0 0 1 1 1 1 LrgB-like family InaF-motif PF15018.1 gi|57642085|ref|YP_184563.1| - 7.1 6.1 6.4 2.2 7.8 0.5 2.8 3 0 0 3 3 3 0 TRP-interacting helix TFX_C PF14601.1 gi|57642086|ref|YP_184564.1| - 1.5e-25 88.7 0.0 2.2e-25 88.2 0.0 1.2 1 0 0 1 1 1 1 DNA_binding protein, TFX, C-term Sigma70_r4 PF04545.11 gi|57642086|ref|YP_184564.1| - 1.6e-07 30.4 2.1 3.3e-07 29.4 1.4 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 GerE PF00196.14 gi|57642086|ref|YP_184564.1| - 2.1e-07 30.1 0.9 3.8e-07 29.3 0.6 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family Sigma70_r4_2 PF08281.7 gi|57642086|ref|YP_184564.1| - 1e-05 24.8 0.6 1.9e-05 24.0 0.4 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_23 PF13384.1 gi|57642086|ref|YP_184564.1| - 5e-05 22.8 0.6 0.00012 21.6 0.4 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_37 PF13744.1 gi|57642086|ref|YP_184564.1| - 9.6e-05 22.1 0.3 0.00021 21.0 0.2 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.2 gi|57642086|ref|YP_184564.1| - 0.0003 20.7 0.3 0.0034 17.4 0.2 2.2 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_7 PF02796.10 gi|57642086|ref|YP_184564.1| - 0.0071 16.1 0.1 0.013 15.3 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase HTH_38 PF13936.1 gi|57642086|ref|YP_184564.1| - 0.017 14.6 0.1 0.046 13.2 0.1 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain UPF0122 PF04297.9 gi|57642086|ref|YP_184564.1| - 0.017 15.1 0.6 0.032 14.2 0.3 1.6 2 0 0 2 2 2 0 Putative helix-turn-helix protein, YlxM / p13 like HTH_3 PF01381.17 gi|57642086|ref|YP_184564.1| - 0.037 13.8 0.4 0.11 12.3 0.2 1.8 2 1 0 2 2 2 0 Helix-turn-helix MarR PF01047.17 gi|57642086|ref|YP_184564.1| - 0.038 13.6 0.1 0.088 12.5 0.0 1.7 1 0 0 1 1 1 0 MarR family HTH_28 PF13518.1 gi|57642086|ref|YP_184564.1| - 0.041 13.8 0.3 0.08 12.9 0.2 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain KorB PF08535.5 gi|57642086|ref|YP_184564.1| - 0.043 13.9 0.1 0.074 13.2 0.0 1.5 1 0 0 1 1 1 0 KorB domain MarR_2 PF12802.2 gi|57642086|ref|YP_184564.1| - 0.053 13.1 0.6 0.13 11.9 0.1 1.9 2 1 0 2 2 2 0 MarR family HTH_24 PF13412.1 gi|57642086|ref|YP_184564.1| - 0.056 12.8 0.1 0.11 11.8 0.1 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_29 PF13551.1 gi|57642086|ref|YP_184564.1| - 0.067 13.3 0.1 0.13 12.4 0.1 1.5 1 0 0 1 1 1 0 Winged helix-turn helix Pex14_N PF04695.8 gi|57642086|ref|YP_184564.1| - 0.092 12.7 0.2 0.14 12.2 0.1 1.3 1 0 0 1 1 1 0 Peroxisomal membrane anchor protein (Pex14p) conserved region Unstab_antitox PF09720.5 gi|57642086|ref|YP_184564.1| - 1.4 8.7 4.5 16 5.2 0.1 2.8 2 1 1 3 3 3 0 Putative addiction module component RNA_Me_trans PF04252.8 gi|57642087|ref|YP_184565.1| - 1.7e-82 275.6 0.6 2.1e-82 275.3 0.4 1.0 1 0 0 1 1 1 1 Predicted SAM-dependent RNA methyltransferase DUF2103 PF09876.4 gi|57642088|ref|YP_184566.1| - 1.4e-31 108.2 0.1 1.6e-31 108.1 0.1 1.0 1 0 0 1 1 1 1 Predicted metal-binding protein (DUF2103) UPF0175 PF03683.8 gi|57642089|ref|YP_184567.1| - 1.1e-18 66.4 0.1 1.4e-18 66.1 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0175) HTH_28 PF13518.1 gi|57642089|ref|YP_184567.1| - 0.074 13.0 0.0 0.14 12.1 0.0 1.5 1 1 0 1 1 1 0 Helix-turn-helix domain DUF3368 PF11848.3 gi|57642090|ref|YP_184568.1| - 5.9e-12 44.9 0.0 1e-11 44.1 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF3368) PPR PF01535.15 gi|57642090|ref|YP_184568.1| - 0.054 13.4 0.1 1.7 8.7 0.1 2.4 2 0 0 2 2 2 0 PPR repeat PUA PF01472.15 gi|57642091|ref|YP_184569.1| - 8e-12 44.7 2.4 1.5e-11 43.8 1.6 1.4 1 0 0 1 1 1 1 PUA domain TGT_C2 PF14810.1 gi|57642091|ref|YP_184569.1| - 5.2e-05 23.0 0.0 9.9e-05 22.1 0.0 1.5 1 0 0 1 1 1 1 Patch-forming domain C2 of tRNA-guanine transglycosylase WXG100 PF06013.7 gi|57642092|ref|YP_184570.1| - 0.00037 20.4 14.1 0.8 9.7 2.4 4.9 3 1 1 4 4 4 2 Proteins of 100 residues with WXG MscS_porin PF12795.2 gi|57642092|ref|YP_184570.1| - 0.00068 19.0 49.3 0.018 14.3 3.6 4.6 1 1 2 3 3 3 2 Mechanosensitive ion channel porin domain TBPIP PF07106.8 gi|57642092|ref|YP_184570.1| - 0.001 18.6 53.5 0.047 13.2 7.8 4.1 1 1 3 4 4 4 2 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Myosin_tail_1 PF01576.14 gi|57642092|ref|YP_184570.1| - 0.0011 16.8 55.6 0.013 13.2 15.6 2.2 1 1 1 2 2 2 2 Myosin tail AAA_27 PF13514.1 gi|57642092|ref|YP_184570.1| - 0.0025 15.6 44.3 0.34 8.5 16.5 2.1 1 1 1 2 2 2 2 AAA domain Laminin_I PF06008.9 gi|57642092|ref|YP_184570.1| - 0.0044 16.3 14.3 0.0044 16.3 9.9 2.5 1 1 1 2 2 2 1 Laminin Domain I DUF4254 PF14063.1 gi|57642092|ref|YP_184570.1| - 0.0052 16.3 1.3 0.0052 16.3 0.9 4.1 1 1 3 4 4 4 1 Protein of unknown function (DUF4254) Reo_sigmaC PF04582.7 gi|57642092|ref|YP_184570.1| - 0.0058 15.8 0.6 2.1 7.4 0.0 2.2 1 1 1 2 2 2 2 Reovirus sigma C capsid protein Seryl_tRNA_N PF02403.17 gi|57642092|ref|YP_184570.1| - 0.0059 16.6 54.5 0.054 13.5 12.4 5.0 1 1 4 5 5 5 3 Seryl-tRNA synthetase N-terminal domain AAA_13 PF13166.1 gi|57642092|ref|YP_184570.1| - 0.013 14.0 47.7 0.011 14.2 22.4 2.1 1 1 1 2 2 2 0 AAA domain APG6 PF04111.7 gi|57642092|ref|YP_184570.1| - 0.016 14.2 57.9 0.059 12.4 17.6 2.9 1 1 2 3 3 3 0 Autophagy protein Apg6 Mnd1 PF03962.10 gi|57642092|ref|YP_184570.1| - 0.016 14.8 9.7 0.016 14.8 6.7 3.9 1 1 2 3 3 2 0 Mnd1 family TMP_2 PF06791.8 gi|57642092|ref|YP_184570.1| - 0.037 13.6 3.5 0.73 9.4 0.5 2.5 2 1 0 2 2 2 0 Prophage tail length tape measure protein Occludin_ELL PF07303.8 gi|57642092|ref|YP_184570.1| - 0.052 14.2 45.5 0.82 10.4 9.7 3.7 1 1 3 4 4 4 0 Occludin homology domain CENP-F_leu_zip PF10473.4 gi|57642092|ref|YP_184570.1| - 0.063 13.1 56.9 1.1 9.1 13.1 4.2 1 1 4 5 5 5 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 EzrA PF06160.7 gi|57642092|ref|YP_184570.1| - 0.071 11.2 45.3 0.099 10.8 14.0 2.3 1 1 1 2 2 2 0 Septation ring formation regulator, EzrA Syntaxin-6_N PF09177.6 gi|57642092|ref|YP_184570.1| - 0.089 13.1 35.7 0.077 13.4 3.5 4.6 1 1 3 4 4 4 0 Syntaxin 6, N-terminal FH2 PF02181.18 gi|57642092|ref|YP_184570.1| - 0.099 11.5 36.0 0.12 11.2 10.6 3.1 1 1 2 3 3 3 0 Formin Homology 2 Domain Tropomyosin_1 PF12718.2 gi|57642092|ref|YP_184570.1| - 0.12 12.2 63.4 0.14 11.9 5.2 4.7 2 1 3 5 5 5 0 Tropomyosin like PspA_IM30 PF04012.7 gi|57642092|ref|YP_184570.1| - 0.17 11.2 52.1 0.015 14.6 16.7 3.5 1 1 1 2 2 2 0 PspA/IM30 family Laminin_II PF06009.7 gi|57642092|ref|YP_184570.1| - 0.2 11.3 34.7 0.44 10.3 2.1 3.5 1 1 1 3 3 3 0 Laminin Domain II GldM_N PF12081.3 gi|57642092|ref|YP_184570.1| - 0.26 10.7 31.2 0.043 13.3 6.1 2.5 1 1 0 2 2 2 0 GldM N-terminal domain Filament PF00038.16 gi|57642092|ref|YP_184570.1| - 0.28 10.5 50.0 10 5.4 34.7 3.6 1 1 0 1 1 1 0 Intermediate filament protein PE PF00934.15 gi|57642092|ref|YP_184570.1| - 0.4 10.7 2.6 3.1 7.9 0.6 3.2 4 1 0 4 4 2 0 PE family CENP-H PF05837.7 gi|57642092|ref|YP_184570.1| - 0.61 10.2 49.7 0.57 10.3 10.2 4.1 1 1 2 4 4 4 0 Centromere protein H (CENP-H) IncA PF04156.9 gi|57642092|ref|YP_184570.1| - 0.64 9.5 56.7 0.068 12.7 12.5 3.1 1 1 1 2 2 1 0 IncA protein MCPsignal PF00015.16 gi|57642092|ref|YP_184570.1| - 0.66 9.4 19.1 0.24 10.9 2.4 2.9 1 1 1 3 3 3 0 Methyl-accepting chemotaxis protein (MCP) signalling domain ERM PF00769.14 gi|57642092|ref|YP_184570.1| - 0.66 9.4 62.3 0.098 12.1 12.9 3.4 1 1 2 3 3 3 0 Ezrin/radixin/moesin family GTP_EFTU PF00009.22 gi|57642092|ref|YP_184570.1| - 0.89 8.9 8.5 0.78 9.1 2.9 2.8 1 1 0 2 2 2 0 Elongation factor Tu GTP binding domain Acyl-CoA_dh_2 PF08028.6 gi|57642092|ref|YP_184570.1| - 1 9.5 5.0 2.1 8.5 2.6 2.2 1 1 0 1 1 1 0 Acyl-CoA dehydrogenase, C-terminal domain DUF4164 PF13747.1 gi|57642092|ref|YP_184570.1| - 1.4 9.0 38.2 1.3 9.2 4.0 4.6 1 1 4 5 5 5 0 Domain of unknown function (DUF4164) Prefoldin_2 PF01920.15 gi|57642092|ref|YP_184570.1| - 1.4 8.6 59.1 0.055 13.2 2.8 6.3 2 1 2 5 5 5 0 Prefoldin subunit GAS PF13851.1 gi|57642092|ref|YP_184570.1| - 1.5 7.9 63.9 0.27 10.4 9.8 3.9 1 1 2 3 3 3 0 Growth-arrest specific micro-tubule binding DUF1664 PF07889.7 gi|57642092|ref|YP_184570.1| - 1.6 8.5 34.0 3.8 7.3 1.1 3.9 2 2 2 4 4 4 0 Protein of unknown function (DUF1664) TPR_MLP1_2 PF07926.7 gi|57642092|ref|YP_184570.1| - 1.6 8.4 53.0 1.9 8.2 12.8 3.7 1 1 3 4 4 4 0 TPR/MLP1/MLP2-like protein DUF3584 PF12128.3 gi|57642092|ref|YP_184570.1| - 1.7 5.8 52.3 3.2 4.9 18.3 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF3584) Snapin_Pallidin PF14712.1 gi|57642092|ref|YP_184570.1| - 1.7 9.0 44.8 3 8.1 3.2 4.5 1 1 3 4 4 4 0 Snapin/Pallidin DUF4140 PF13600.1 gi|57642092|ref|YP_184570.1| - 1.7 9.1 44.1 0.065 13.6 1.7 5.5 1 1 4 5 5 5 0 N-terminal domain of unknown function (DUF4140) NPV_P10 PF05531.7 gi|57642092|ref|YP_184570.1| - 2 8.7 24.2 18 5.6 0.1 4.9 1 1 3 4 4 4 0 Nucleopolyhedrovirus P10 protein Hemerythrin PF01814.18 gi|57642092|ref|YP_184570.1| - 2.2 8.4 19.4 1.4 9.1 0.6 4.3 1 1 1 3 3 3 0 Hemerythrin HHE cation binding domain DUF2935 PF11155.3 gi|57642092|ref|YP_184570.1| - 3 7.9 25.8 0.34 10.9 3.4 3.7 1 1 2 3 3 3 0 Domain of unknown function (DUF2935) DUF2968 PF11180.3 gi|57642092|ref|YP_184570.1| - 3.1 7.1 44.5 1.1 8.6 8.8 3.9 1 1 2 4 4 4 0 Protein of unknown function (DUF2968) DUF972 PF06156.8 gi|57642092|ref|YP_184570.1| - 3.8 7.8 44.8 0.61 10.4 8.9 4.1 1 1 3 4 4 4 0 Protein of unknown function (DUF972) DUF869 PF05911.6 gi|57642092|ref|YP_184570.1| - 4 5.5 44.4 13 3.8 30.8 1.7 1 1 0 1 1 1 0 Plant protein of unknown function (DUF869) zf-C4H2 PF10146.4 gi|57642092|ref|YP_184570.1| - 4.8 7.1 49.3 5.5 6.9 13.4 2.2 1 1 1 2 2 2 0 Zinc finger-containing protein Spc7 PF08317.6 gi|57642092|ref|YP_184570.1| - 5.5 5.5 55.6 0.96 8.0 14.7 3.1 1 1 2 3 3 3 0 Spc7 kinetochore protein Bul1_C PF04426.7 gi|57642092|ref|YP_184570.1| - 6.7 5.8 28.3 0.64 9.1 2.6 2.4 1 1 1 2 2 2 0 Bul1 C terminus DUF948 PF06103.6 gi|57642092|ref|YP_184570.1| - 6.8 6.6 20.6 5.3 6.9 3.1 4.2 2 2 2 4 4 4 0 Bacterial protein of unknown function (DUF948) Adeno_PIX PF03955.9 gi|57642092|ref|YP_184570.1| - 7.1 7.1 17.6 5.1 7.6 0.1 4.3 2 1 1 4 4 4 0 Adenovirus hexon-associated protein (IX) CALCOCO1 PF07888.6 gi|57642092|ref|YP_184570.1| - 8 4.6 49.1 0.059 11.6 3.3 3.0 1 1 2 3 3 3 0 Calcium binding and coiled-coil domain (CALCOCO1) like UPF0184 PF03670.8 gi|57642092|ref|YP_184570.1| - 8.2 6.6 16.1 1.8 8.8 0.8 3.6 2 1 1 3 3 3 0 Uncharacterised protein family (UPF0184) DUF4201 PF13870.1 gi|57642092|ref|YP_184570.1| - 8.2 5.8 58.1 1.3 8.3 14.2 3.7 1 1 2 3 3 3 0 Domain of unknown function (DUF4201) AA_kinase PF00696.23 gi|57642093|ref|YP_184571.1| - 2.5e-32 112.3 0.2 2.9e-32 112.1 0.1 1.0 1 0 0 1 1 1 1 Amino acid kinase family Acetyltransf_10 PF13673.1 gi|57642093|ref|YP_184571.1| - 0.0048 16.9 0.0 0.074 13.1 0.0 2.4 2 1 0 2 2 2 1 Acetyltransferase (GNAT) domain SBP_bac_5 PF00496.17 gi|57642093|ref|YP_184571.1| - 0.014 14.2 0.0 0.035 12.9 0.0 1.6 2 0 0 2 2 2 0 Bacterial extracellular solute-binding proteins, family 5 Middle NAD_binding_8 PF13450.1 gi|57642094|ref|YP_184572.1| - 4.2e-13 49.1 0.3 8.7e-13 48.1 0.2 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.19 gi|57642094|ref|YP_184572.1| - 1.1e-10 40.9 2.1 4.2e-10 39.0 1.5 1.8 1 1 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|57642094|ref|YP_184572.1| - 8.1e-08 32.3 0.1 4.3e-05 23.4 0.0 2.6 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|57642094|ref|YP_184572.1| - 1.2e-06 28.8 2.4 0.0007 19.9 0.1 3.3 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|57642094|ref|YP_184572.1| - 7.3e-06 25.0 0.1 1.1e-05 24.4 0.0 1.3 1 0 0 1 1 1 1 FAD binding domain Amino_oxidase PF01593.19 gi|57642094|ref|YP_184572.1| - 0.00011 21.4 0.1 0.00027 20.1 0.0 1.6 1 1 0 1 1 1 1 Flavin containing amine oxidoreductase FAD_binding_3 PF01494.14 gi|57642094|ref|YP_184572.1| - 0.00029 20.0 0.7 0.00095 18.3 0.5 1.8 2 0 0 2 2 2 1 FAD binding domain HI0933_like PF03486.9 gi|57642094|ref|YP_184572.1| - 0.0069 14.8 0.1 0.013 14.0 0.1 1.4 1 0 0 1 1 1 1 HI0933-like protein FAD_oxidored PF12831.2 gi|57642094|ref|YP_184572.1| - 0.013 14.6 1.1 0.013 14.5 0.1 1.5 2 0 0 2 2 2 0 FAD dependent oxidoreductase Pyr_redox_3 PF13738.1 gi|57642094|ref|YP_184572.1| - 0.034 14.2 0.1 0.91 9.5 0.2 2.2 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|57642094|ref|YP_184572.1| - 0.061 12.4 0.7 0.15 11.1 0.1 1.8 2 0 0 2 2 2 0 Thi4 family Glyco_hydro_43 PF04616.9 gi|57642094|ref|YP_184572.1| - 0.073 12.1 0.0 0.11 11.5 0.0 1.2 1 0 0 1 1 1 0 Glycosyl hydrolases family 43 ApbA PF02558.11 gi|57642094|ref|YP_184572.1| - 0.076 12.4 1.1 0.15 11.5 0.3 1.8 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA GDI PF00996.13 gi|57642094|ref|YP_184572.1| - 0.25 9.6 0.5 1.1 7.4 0.0 2.0 2 0 0 2 2 2 0 GDP dissociation inhibitor Fer4_12 PF13353.1 gi|57642095|ref|YP_184573.1| - 1e-15 58.0 0.9 3.5e-15 56.3 0.0 2.1 2 0 0 2 2 2 1 4Fe-4S single cluster domain Radical_SAM PF04055.16 gi|57642095|ref|YP_184573.1| - 2.7e-11 43.9 0.0 5.5e-11 42.9 0.0 1.6 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|57642095|ref|YP_184573.1| - 6.1e-11 42.3 0.5 5.7e-10 39.2 0.0 2.3 2 0 0 2 2 2 1 4Fe-4S single cluster domain DUF3645 PF12359.3 gi|57642095|ref|YP_184573.1| - 0.088 11.9 0.0 0.43 9.7 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3645) ABC_tran PF00005.22 gi|57642096|ref|YP_184574.1| - 4.4e-29 101.5 0.0 6.4e-29 100.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|57642096|ref|YP_184574.1| - 1.9e-10 41.1 0.1 0.00066 19.7 0.0 2.2 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|57642096|ref|YP_184574.1| - 3.2e-06 26.5 0.1 0.00021 20.5 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain MobB PF03205.9 gi|57642096|ref|YP_184574.1| - 0.0011 18.7 0.1 0.0026 17.4 0.0 1.6 2 0 0 2 2 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_23 PF13476.1 gi|57642096|ref|YP_184574.1| - 0.0012 19.2 0.2 0.0018 18.6 0.1 1.3 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|57642096|ref|YP_184574.1| - 0.0017 17.8 0.0 0.0034 16.8 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_17 PF13207.1 gi|57642096|ref|YP_184574.1| - 0.0043 17.8 0.0 0.01 16.6 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|57642096|ref|YP_184574.1| - 0.0055 16.8 0.0 0.012 15.7 0.0 1.8 1 1 0 1 1 1 1 AAA domain Miro PF08477.8 gi|57642096|ref|YP_184574.1| - 0.0065 16.9 0.0 0.013 15.9 0.0 1.5 1 0 0 1 1 1 1 Miro-like protein AAA_14 PF13173.1 gi|57642096|ref|YP_184574.1| - 0.0071 16.2 0.0 0.017 14.9 0.0 1.7 2 0 0 2 2 1 1 AAA domain AAA_33 PF13671.1 gi|57642096|ref|YP_184574.1| - 0.0086 15.9 0.0 0.017 14.9 0.0 1.6 1 0 0 1 1 1 1 AAA domain UPF0079 PF02367.12 gi|57642096|ref|YP_184574.1| - 0.0096 15.5 0.0 0.031 13.8 0.0 1.8 2 0 0 2 2 2 1 Uncharacterised P-loop hydrolase UPF0079 cobW PF02492.14 gi|57642096|ref|YP_184574.1| - 0.013 14.9 0.1 0.022 14.1 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain Arch_ATPase PF01637.13 gi|57642096|ref|YP_184574.1| - 0.014 15.0 0.1 0.033 13.8 0.1 1.5 1 0 0 1 1 1 0 Archaeal ATPase AAA_16 PF13191.1 gi|57642096|ref|YP_184574.1| - 0.015 15.2 0.0 0.028 14.4 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain DUF258 PF03193.11 gi|57642096|ref|YP_184574.1| - 0.015 14.4 0.0 0.025 13.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA PF00004.24 gi|57642096|ref|YP_184574.1| - 0.021 14.9 0.0 0.13 12.5 0.0 2.3 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_15 PF13175.1 gi|57642096|ref|YP_184574.1| - 0.023 13.7 0.0 0.029 13.4 0.0 1.2 1 0 0 1 1 1 0 AAA ATPase domain AAA_28 PF13521.1 gi|57642096|ref|YP_184574.1| - 0.032 14.1 0.0 0.091 12.7 0.0 1.7 2 0 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.18 gi|57642096|ref|YP_184574.1| - 0.039 13.9 0.1 0.13 12.2 0.0 1.8 2 1 0 2 2 2 0 50S ribosome-binding GTPase T2SE PF00437.15 gi|57642096|ref|YP_184574.1| - 0.04 12.8 0.0 0.069 12.0 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_30 PF13604.1 gi|57642096|ref|YP_184574.1| - 0.061 12.9 0.1 0.34 10.4 0.0 1.9 2 0 0 2 2 2 0 AAA domain Zeta_toxin PF06414.7 gi|57642096|ref|YP_184574.1| - 0.069 12.2 0.0 0.13 11.3 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin ArgK PF03308.11 gi|57642096|ref|YP_184574.1| - 0.086 11.6 0.1 0.14 10.9 0.1 1.3 1 0 0 1 1 1 0 ArgK protein AAA_18 PF13238.1 gi|57642096|ref|YP_184574.1| - 0.092 13.0 0.0 0.17 12.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|57642096|ref|YP_184574.1| - 0.11 12.2 0.0 0.2 11.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) SRP54 PF00448.17 gi|57642096|ref|YP_184574.1| - 0.11 11.9 0.0 0.18 11.2 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_24 PF13479.1 gi|57642096|ref|YP_184574.1| - 0.11 12.0 0.0 0.23 10.9 0.0 1.7 1 1 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|57642096|ref|YP_184574.1| - 0.12 12.0 0.1 0.19 11.3 0.1 1.3 1 0 0 1 1 1 0 NACHT domain Mg_chelatase PF01078.16 gi|57642096|ref|YP_184574.1| - 0.12 11.5 0.0 0.19 10.8 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_19 PF13245.1 gi|57642096|ref|YP_184574.1| - 0.12 12.1 0.1 0.39 10.5 0.1 1.8 2 0 0 2 2 2 0 Part of AAA domain NTPase_1 PF03266.10 gi|57642096|ref|YP_184574.1| - 0.12 12.0 0.1 0.27 10.9 0.1 1.5 1 0 0 1 1 1 0 NTPase NB-ARC PF00931.17 gi|57642096|ref|YP_184574.1| - 0.14 11.0 0.0 0.25 10.1 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain DUF3584 PF12128.3 gi|57642096|ref|YP_184574.1| - 0.18 9.0 0.1 0.26 8.5 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) ABC2_membrane PF01061.19 gi|57642097|ref|YP_184575.1| - 0.00085 18.5 25.4 0.0046 16.1 17.6 1.7 1 1 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|57642097|ref|YP_184575.1| - 0.92 8.4 26.0 0.01 14.9 10.9 1.9 1 1 1 2 2 2 0 ABC-2 family transporter protein DUF4583 PF15190.1 gi|57642097|ref|YP_184575.1| - 3.1 7.4 5.9 0.43 10.2 0.1 2.4 2 2 1 3 3 3 0 Domain of unknown function (DUF4583) AFOR_N PF02730.10 gi|57642098|ref|YP_184576.1| - 7.5e-48 162.5 0.0 1.4e-47 161.6 0.0 1.5 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain AFOR_C PF01314.13 gi|57642098|ref|YP_184576.1| - 1.2e-14 53.7 0.0 1.4e-13 50.3 0.0 2.0 2 0 0 2 2 2 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 FBPase_3 PF01950.11 gi|57642099|ref|YP_184577.1| - 4.4e-189 628.0 0.0 5e-189 627.8 0.0 1.0 1 0 0 1 1 1 1 Fructose-1,6-bisphosphatase DUF3354 PF11834.3 gi|57642100|ref|YP_184578.1| - 0.088 12.4 0.2 0.56 9.8 0.0 2.1 2 1 0 2 2 2 0 Domain of unknown function (DUF3354) Peptidase_M20 PF01546.23 gi|57642101|ref|YP_184579.1| - 1.6e-33 115.7 0.0 2.1e-33 115.4 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|57642101|ref|YP_184579.1| - 6.2e-10 38.8 0.0 2.6e-09 36.8 0.0 2.1 2 1 0 2 2 2 1 Peptidase dimerisation domain Peptidase_M28 PF04389.12 gi|57642101|ref|YP_184579.1| - 0.00014 21.7 0.0 0.00021 21.0 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M28 PAPS_reduct PF01507.14 gi|57642102|ref|YP_184580.1| - 9.3e-37 126.5 0.0 1.6e-36 125.7 0.0 1.4 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family NAD_synthase PF02540.12 gi|57642102|ref|YP_184580.1| - 1.8e-06 27.0 0.0 8.6e-06 24.8 0.0 2.0 2 0 0 2 2 2 1 NAD synthase QueC PF06508.8 gi|57642102|ref|YP_184580.1| - 2.6e-05 23.5 0.0 4.8e-05 22.7 0.0 1.4 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC ATP_bind_4 PF01902.12 gi|57642102|ref|YP_184580.1| - 0.0023 17.3 0.0 0.007 15.7 0.0 1.8 1 1 0 1 1 1 1 ATP-binding region RNA_bind_2 PF10133.4 gi|57642102|ref|YP_184580.1| - 0.057 13.4 0.4 7.1 6.7 0.1 2.7 3 0 0 3 3 3 0 Predicted RNA-binding protein Asn_synthase PF00733.16 gi|57642102|ref|YP_184580.1| - 0.062 12.7 0.0 0.11 11.9 0.0 1.3 1 0 0 1 1 1 0 Asparagine synthase tRNA_Me_trans PF03054.11 gi|57642102|ref|YP_184580.1| - 0.064 11.8 0.0 0.17 10.3 0.0 1.7 3 0 0 3 3 3 0 tRNA methyl transferase Lon_C PF05362.8 gi|57642103|ref|YP_184581.1| - 9e-13 48.0 2.0 1.8e-12 46.9 1.4 1.5 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain DUF4398 PF14346.1 gi|57642103|ref|YP_184581.1| - 0.00017 21.5 16.9 0.0034 17.4 0.3 3.5 2 1 0 3 3 3 2 Domain of unknown function (DUF4398) ChlI PF13541.1 gi|57642103|ref|YP_184581.1| - 0.0027 17.1 0.0 0.0083 15.6 0.0 1.8 1 0 0 1 1 1 1 Subunit ChlI of Mg-chelatase DUF357 PF04010.8 gi|57642103|ref|YP_184581.1| - 0.19 11.4 22.1 0.1 12.2 2.1 4.8 4 2 1 5 5 5 0 Protein of unknown function (DUF357) PmbA_TldD PF01523.11 gi|57642104|ref|YP_184582.1| - 1.1e-75 254.6 0.3 1.5e-75 254.2 0.2 1.2 1 0 0 1 1 1 1 Putative modulator of DNA gyrase PmbA_TldD PF01523.11 gi|57642105|ref|YP_184583.1| - 8e-67 225.5 1.0 1e-66 225.2 0.3 1.4 2 0 0 2 2 2 1 Putative modulator of DNA gyrase DUF257 PF03192.8 gi|57642106|ref|YP_184584.1| - 3.2e-60 203.0 0.1 3.7e-60 202.8 0.1 1.0 1 0 0 1 1 1 1 Pyrococcus protein of unknown function, DUF257 Alpha-amylase PF00128.19 gi|57642107|ref|YP_184585.1| - 3e-67 227.2 0.0 4e-67 226.8 0.0 1.1 1 0 0 1 1 1 1 Alpha amylase, catalytic domain TIG PF01833.19 gi|57642107|ref|YP_184585.1| - 5.1e-09 35.9 0.0 1.6e-08 34.3 0.0 1.9 1 0 0 1 1 1 1 IPT/TIG domain Alpha-amylase_C PF02806.13 gi|57642107|ref|YP_184585.1| - 1.1e-07 31.8 0.0 6.3e-07 29.4 0.0 2.2 2 0 0 2 2 2 1 Alpha amylase, C-terminal all-beta domain GHL5 PF14872.1 gi|57642107|ref|YP_184585.1| - 0.042 11.6 0.0 0.059 11.1 0.0 1.1 1 0 0 1 1 1 0 Hypothetical glycoside hydrolase 5 bPH_3 PF14470.1 gi|57642108|ref|YP_184586.1| - 2.7e-20 72.4 0.3 4.9e-20 71.5 0.2 1.4 1 0 0 1 1 1 1 Bacterial PH domain SHOCT PF09851.4 gi|57642108|ref|YP_184586.1| - 8.4e-13 47.3 4.6 2e-12 46.1 3.2 1.7 1 0 0 1 1 1 1 Short C-terminal domain GvpG PF05120.7 gi|57642108|ref|YP_184586.1| - 0.0016 18.2 0.3 0.0036 17.0 0.2 1.7 1 0 0 1 1 1 1 Gas vesicle protein G DMAP_binding PF06464.6 gi|57642108|ref|YP_184586.1| - 0.0074 16.8 3.2 0.0074 16.8 2.2 2.1 2 0 0 2 2 2 1 DMAP1-binding Domain bPH_1 PF08000.6 gi|57642108|ref|YP_184586.1| - 0.013 15.1 0.1 0.035 13.7 0.1 1.8 1 1 0 1 1 1 0 Bacterial PH domain PH_3 PF14593.1 gi|57642108|ref|YP_184586.1| - 0.098 12.5 0.5 0.23 11.3 0.3 1.8 1 1 0 1 1 1 0 PH domain E1_dh PF00676.15 gi|57642108|ref|YP_184586.1| - 0.27 9.9 1.4 0.38 9.4 0.4 1.6 2 0 0 2 2 2 0 Dehydrogenase E1 component DUF2235 PF09994.4 gi|57642110|ref|YP_184588.1| - 0.0047 16.3 0.0 0.0061 15.9 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized alpha/beta hydrolase domain (DUF2235) LTD PF00932.14 gi|57642113|ref|YP_184591.1| - 1.1e-09 38.3 0.3 1.1e-09 38.3 0.2 3.3 3 1 1 4 4 4 1 Lamin Tail Domain PapJ PF14855.1 gi|57642113|ref|YP_184591.1| - 0.0066 15.9 0.0 0.013 15.0 0.0 1.4 1 0 0 1 1 1 1 Pilus-assembly fibrillin subunit, chaperone BtpA PF03437.10 gi|57642114|ref|YP_184592.1| - 4.9e-112 373.3 0.2 5.5e-112 373.1 0.1 1.0 1 0 0 1 1 1 1 BtpA family PcrB PF01884.12 gi|57642114|ref|YP_184592.1| - 0.0081 15.4 0.6 0.67 9.1 0.0 2.9 2 2 1 3 3 3 2 PcrB family EF-hand_5 PF13202.1 gi|57642116|ref|YP_184594.1| - 1.7 8.1 25.6 0.54 9.7 0.3 5.9 6 0 0 6 6 6 0 EF hand EF-hand_1 PF00036.27 gi|57642116|ref|YP_184594.1| - 3.8 7.0 21.9 2.1 7.8 0.1 5.8 5 1 1 6 6 6 0 EF hand bPH_3 PF14470.1 gi|57642117|ref|YP_184595.1| - 0.097 12.9 0.9 2.4 8.5 0.1 2.2 2 0 0 2 2 2 0 Bacterial PH domain SPOR PF05036.8 gi|57642119|ref|YP_184597.1| - 0.015 15.4 0.2 0.22 11.7 0.1 2.6 2 1 1 3 3 3 0 Sporulation related domain DUF4292 PF14125.1 gi|57642119|ref|YP_184597.1| - 0.048 13.0 0.6 0.062 12.7 0.4 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4292) PGM_PMM_I PF02878.11 gi|57642120|ref|YP_184598.1| - 2.5e-44 150.1 0.0 4.1e-44 149.4 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.11 gi|57642120|ref|YP_184598.1| - 4.9e-20 71.8 0.0 1.1e-19 70.6 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.11 gi|57642120|ref|YP_184598.1| - 2.9e-19 69.1 0.0 6.1e-19 68.1 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.15 gi|57642120|ref|YP_184598.1| - 2.7e-09 36.8 0.0 6.6e-09 35.6 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain EamA PF00892.15 gi|57642121|ref|YP_184599.1| - 1e-19 70.8 16.0 1.3e-19 70.5 11.1 1.1 1 0 0 1 1 1 1 EamA-like transporter family EmrE PF13536.1 gi|57642121|ref|YP_184599.1| - 8.6e-09 35.5 12.8 8.6e-09 35.5 8.9 1.8 1 1 1 2 2 2 1 Multidrug resistance efflux transporter TPT PF03151.11 gi|57642121|ref|YP_184599.1| - 3.3e-05 23.5 11.9 6.8e-05 22.5 8.3 1.4 1 1 0 1 1 1 1 Triose-phosphate Transporter family UPF0546 PF10639.4 gi|57642121|ref|YP_184599.1| - 0.35 10.6 5.4 0.22 11.3 1.1 2.0 1 1 1 2 2 2 0 Uncharacterised protein family UPF0546 DUF3533 PF12051.3 gi|57642121|ref|YP_184599.1| - 1.6 7.3 8.2 2.2 6.9 5.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3533) DUF835 PF05763.7 gi|57642122|ref|YP_184600.1| - 9.9e-38 128.7 0.0 1.4e-37 128.3 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF835) Cyt_c_ox_IV PF12270.3 gi|57642122|ref|YP_184600.1| - 8 6.2 8.1 0.7 9.6 0.1 2.6 2 2 1 3 3 3 0 Cytochrome c oxidase subunit IV PMT_2 PF13231.1 gi|57642123|ref|YP_184601.1| - 1.2e-14 54.5 16.1 1.2e-14 54.5 11.1 3.3 4 0 0 4 4 4 1 Dolichyl-phosphate-mannose-protein mannosyltransferase NicO PF03824.11 gi|57642124|ref|YP_184602.1| - 0.012 14.9 3.4 0.02 14.1 2.4 1.3 1 0 0 1 1 1 0 High-affinity nickel-transport protein Transgly_assoc PF04226.8 gi|57642124|ref|YP_184602.1| - 0.03 14.4 2.9 0.99 9.5 0.2 2.8 2 0 0 2 2 2 0 Transglycosylase associated protein HTH_5 PF01022.15 gi|57642125|ref|YP_184603.1| - 4.3e-10 39.1 0.0 6.6e-10 38.5 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|57642125|ref|YP_184603.1| - 7.4e-10 38.4 0.1 1.1e-09 37.9 0.1 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|57642125|ref|YP_184603.1| - 2.2e-07 30.1 0.3 3e-07 29.7 0.2 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|57642125|ref|YP_184603.1| - 2.8e-06 26.9 0.1 4e-06 26.3 0.1 1.2 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|57642125|ref|YP_184603.1| - 8e-06 25.4 0.1 1.1e-05 25.0 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.1 gi|57642125|ref|YP_184603.1| - 0.00019 21.6 0.0 0.00026 21.2 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR PF01047.17 gi|57642125|ref|YP_184603.1| - 0.00021 20.9 0.0 0.00032 20.3 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_28 PF13518.1 gi|57642125|ref|YP_184603.1| - 0.00022 21.1 0.2 0.00029 20.7 0.1 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|57642125|ref|YP_184603.1| - 0.00027 20.5 0.1 0.00048 19.7 0.1 1.4 1 0 0 1 1 1 1 HTH domain HTH_23 PF13384.1 gi|57642125|ref|YP_184603.1| - 0.0003 20.3 0.1 0.00048 19.6 0.1 1.3 1 0 0 1 1 1 1 Homeodomain-like domain HTH_45 PF14947.1 gi|57642125|ref|YP_184603.1| - 0.00044 19.9 0.1 0.00071 19.3 0.0 1.4 1 1 0 1 1 1 1 Winged helix-turn-helix Rrf2 PF02082.15 gi|57642125|ref|YP_184603.1| - 0.00092 19.2 0.1 0.0013 18.7 0.0 1.3 1 1 0 1 1 1 1 Transcriptional regulator HTH_IclR PF09339.5 gi|57642125|ref|YP_184603.1| - 0.0012 18.3 0.1 0.0017 17.9 0.1 1.2 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_29 PF13551.1 gi|57642125|ref|YP_184603.1| - 0.0014 18.7 0.1 0.0017 18.5 0.1 1.1 1 0 0 1 1 1 1 Winged helix-turn helix HTH_30 PF13556.1 gi|57642125|ref|YP_184603.1| - 0.0014 18.1 0.3 0.0023 17.4 0.2 1.3 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain HTH_12 PF08461.5 gi|57642125|ref|YP_184603.1| - 0.0018 17.9 0.2 0.0032 17.1 0.1 1.5 1 1 0 1 1 1 1 Ribonuclease R winged-helix domain GntR PF00392.16 gi|57642125|ref|YP_184603.1| - 0.0073 15.7 0.0 0.015 14.7 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family FaeA PF04703.7 gi|57642125|ref|YP_184603.1| - 0.0074 16.4 0.1 0.011 15.9 0.1 1.3 1 0 0 1 1 1 1 FaeA-like protein Phage_rep_org_N PF09681.5 gi|57642125|ref|YP_184603.1| - 0.0095 15.4 0.0 0.0096 15.4 0.0 1.1 1 0 0 1 1 1 1 N-terminal phage replisome organiser (Phage_rep_org_N) HTH_10 PF04967.7 gi|57642125|ref|YP_184603.1| - 0.0099 15.4 0.0 0.015 14.9 0.0 1.2 1 0 0 1 1 1 1 HTH DNA binding domain DUF2089 PF09862.4 gi|57642125|ref|YP_184603.1| - 0.011 15.5 0.0 0.012 15.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2089) RP-C PF03428.8 gi|57642125|ref|YP_184603.1| - 0.018 14.4 0.1 0.024 14.1 0.1 1.2 1 0 0 1 1 1 0 Replication protein C N-terminal domain HTH_34 PF13601.1 gi|57642125|ref|YP_184603.1| - 0.02 14.9 0.0 0.034 14.1 0.0 1.4 1 1 0 1 1 1 0 Winged helix DNA-binding domain LexA_DNA_bind PF01726.11 gi|57642125|ref|YP_184603.1| - 0.029 13.9 0.0 0.044 13.3 0.0 1.2 1 0 0 1 1 1 0 LexA DNA binding domain DUF4423 PF14394.1 gi|57642125|ref|YP_184603.1| - 0.039 13.5 0.0 0.048 13.2 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) DUF2250 PF10007.4 gi|57642125|ref|YP_184603.1| - 0.046 13.6 0.0 0.061 13.2 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_38 PF13936.1 gi|57642125|ref|YP_184603.1| - 0.055 13.0 0.0 0.084 12.4 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_AsnC-type PF13404.1 gi|57642125|ref|YP_184603.1| - 0.058 12.9 0.2 0.75 9.3 0.1 2.5 2 1 0 2 2 2 0 AsnC-type helix-turn-helix domain Penicillinase_R PF03965.11 gi|57642125|ref|YP_184603.1| - 0.066 13.3 0.0 0.083 12.9 0.0 1.2 1 0 0 1 1 1 0 Penicillinase repressor DUF4093 PF13331.1 gi|57642125|ref|YP_184603.1| - 0.073 13.2 0.5 4.2 7.6 0.1 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4093) HTH_8 PF02954.14 gi|57642125|ref|YP_184603.1| - 0.077 12.5 0.9 0.12 11.9 0.7 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family HTH_Crp_2 PF13545.1 gi|57642125|ref|YP_184603.1| - 0.11 12.3 0.0 0.14 11.9 0.0 1.3 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain PASTA PF03793.14 gi|57642125|ref|YP_184603.1| - 0.14 11.8 0.0 0.2 11.3 0.0 1.2 1 0 0 1 1 1 0 PASTA domain DUF523 PF04463.7 gi|57642126|ref|YP_184604.1| - 2.7e-11 43.3 0.0 3.8e-11 42.9 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF523) AAA_18 PF13238.1 gi|57642127|ref|YP_184605.1| - 3.2e-17 63.0 1.6 5.5e-17 62.2 0.5 1.7 1 1 1 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|57642127|ref|YP_184605.1| - 1.4e-12 48.4 2.3 3.6e-12 47.1 1.6 1.7 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|57642127|ref|YP_184605.1| - 2.2e-05 24.3 0.0 5.5e-05 23.0 0.0 1.7 1 1 0 1 1 1 1 AAA domain CoaE PF01121.15 gi|57642127|ref|YP_184605.1| - 3.6e-05 23.2 0.7 0.003 16.9 0.0 2.3 2 1 0 2 2 2 1 Dephospho-CoA kinase SKI PF01202.17 gi|57642127|ref|YP_184605.1| - 0.00063 19.6 0.7 0.018 14.9 0.7 2.1 2 0 0 2 2 2 1 Shikimate kinase Oligomerisation PF02410.10 gi|57642127|ref|YP_184605.1| - 0.1 12.6 0.1 14 5.8 0.0 2.3 1 1 1 2 2 2 0 Oligomerisation domain Pox_A22 PF04848.8 gi|57642127|ref|YP_184605.1| - 0.11 12.4 0.1 0.18 11.6 0.1 1.3 1 0 0 1 1 1 0 Poxvirus A22 protein Thymidylate_kin PF02223.12 gi|57642127|ref|YP_184605.1| - 0.12 11.7 1.7 0.48 9.7 0.4 2.2 2 0 0 2 2 2 0 Thymidylate kinase Zeta_toxin PF06414.7 gi|57642127|ref|YP_184605.1| - 0.2 10.7 2.8 7.2 5.6 0.0 2.3 2 0 0 2 2 2 0 Zeta toxin AAA_23 PF13476.1 gi|57642127|ref|YP_184605.1| - 2 8.6 6.0 2.5 8.3 0.7 2.1 2 0 0 2 2 2 0 AAA domain DUF3816 PF12822.2 gi|57642129|ref|YP_184607.1| - 1.7e-07 31.3 19.8 2e-07 31.0 13.7 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3816) DUF2232 PF09991.4 gi|57642129|ref|YP_184607.1| - 0.023 13.6 15.1 2.1 7.2 8.8 2.3 2 0 0 2 2 2 0 Predicted membrane protein (DUF2232) Thia_YuaJ PF09515.5 gi|57642129|ref|YP_184607.1| - 0.6 9.8 18.9 2.7 7.7 13.1 2.2 1 1 0 1 1 1 0 Thiamine transporter protein (Thia_YuaJ) 5TM-5TMR_LYT PF07694.7 gi|57642129|ref|YP_184607.1| - 0.72 9.1 17.5 0.94 8.7 12.2 1.3 1 1 0 1 1 1 0 5TMR of 5TMR-LYT PyrI PF01948.13 gi|57642130|ref|YP_184608.1| - 1.9e-36 123.9 0.6 2.6e-36 123.5 0.4 1.2 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, allosteric domain PyrI_C PF02748.10 gi|57642130|ref|YP_184608.1| - 2.4e-23 81.3 2.6 3.8e-23 80.6 1.8 1.3 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, metal binding domain OTCace_N PF02729.16 gi|57642131|ref|YP_184609.1| - 3.4e-48 162.9 0.0 4.8e-48 162.4 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.19 gi|57642131|ref|YP_184609.1| - 2.2e-37 128.3 0.0 3.5e-37 127.6 0.0 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ThiI PF02568.9 gi|57642131|ref|YP_184609.1| - 0.09 12.2 0.0 0.24 10.8 0.0 1.7 2 0 0 2 2 2 0 Thiamine biosynthesis protein (ThiI) Aldolase_2 PF10120.4 gi|57642132|ref|YP_184610.1| - 2.3e-49 167.0 0.0 3.3e-49 166.5 0.0 1.2 1 0 0 1 1 1 1 Putative aldolase HTH_3 PF01381.17 gi|57642132|ref|YP_184610.1| - 3.2e-05 23.6 0.1 0.00017 21.3 0.1 2.2 2 0 0 2 2 2 1 Helix-turn-helix HTH_31 PF13560.1 gi|57642132|ref|YP_184610.1| - 0.0003 20.9 0.0 0.0008 19.5 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_37 PF13744.1 gi|57642132|ref|YP_184610.1| - 0.0025 17.5 0.0 0.0066 16.2 0.0 1.7 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.2 gi|57642132|ref|YP_184610.1| - 0.0053 16.7 0.0 0.018 15.0 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain Terminase_5 PF06056.7 gi|57642132|ref|YP_184610.1| - 0.033 13.7 0.1 0.07 12.6 0.0 1.5 1 0 0 1 1 1 0 Putative ATPase subunit of terminase (gpP-like) RepB PF07506.6 gi|57642132|ref|YP_184610.1| - 0.04 13.7 0.0 0.076 12.8 0.0 1.5 1 0 0 1 1 1 0 RepB plasmid partitioning protein HTH_23 PF13384.1 gi|57642132|ref|YP_184610.1| - 0.042 13.5 0.1 0.11 12.1 0.0 1.7 1 0 0 1 1 1 0 Homeodomain-like domain HTH_38 PF13936.1 gi|57642132|ref|YP_184610.1| - 0.043 13.3 2.2 0.08 12.5 0.0 2.4 3 0 0 3 3 3 0 Helix-turn-helix domain KorB PF08535.5 gi|57642132|ref|YP_184610.1| - 0.053 13.6 0.0 0.11 12.6 0.0 1.6 1 1 0 1 1 1 0 KorB domain HTH_Crp_2 PF13545.1 gi|57642132|ref|YP_184610.1| - 0.06 13.1 0.0 0.2 11.4 0.0 1.9 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain UPF0047 PF01894.12 gi|57642133|ref|YP_184611.1| - 2.3e-37 127.4 0.0 2.6e-37 127.2 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 cobW PF02492.14 gi|57642135|ref|YP_184613.1| - 5.9e-07 29.0 0.0 1.2e-06 28.1 0.0 1.5 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain PTS_IIB PF02302.12 gi|57642135|ref|YP_184613.1| - 0.00016 22.0 3.5 0.99 9.9 0.0 4.0 4 1 1 5 5 4 2 PTS system, Lactose/Cellobiose specific IIB subunit B12-binding PF02310.14 gi|57642135|ref|YP_184613.1| - 0.0015 18.4 0.3 1 9.2 0.0 3.7 5 0 0 5 5 4 1 B12 binding domain CbiA PF01656.18 gi|57642135|ref|YP_184613.1| - 0.0065 15.8 6.1 0.031 13.6 0.4 3.3 2 2 0 3 3 3 1 CobQ/CobB/MinD/ParA nucleotide binding domain MobB PF03205.9 gi|57642135|ref|YP_184613.1| - 0.016 14.9 0.1 0.19 11.4 0.0 2.7 3 0 0 3 3 3 0 Molybdopterin guanine dinucleotide synthesis protein B PPK2 PF03976.9 gi|57642135|ref|YP_184613.1| - 0.018 14.3 0.3 0.054 12.7 0.1 1.9 2 1 1 3 3 3 0 Polyphosphate kinase 2 (PPK2) Glyco_tran_WecB PF03808.8 gi|57642135|ref|YP_184613.1| - 0.028 13.8 0.1 1.5 8.1 0.0 3.3 4 1 0 4 4 4 0 Glycosyl transferase WecB/TagA/CpsF family AAA_30 PF13604.1 gi|57642135|ref|YP_184613.1| - 0.052 13.1 0.9 0.56 9.7 0.2 2.6 2 1 1 3 3 3 0 AAA domain AAA_31 PF13614.1 gi|57642135|ref|YP_184613.1| - 0.057 13.3 0.0 0.27 11.1 0.0 2.2 2 1 0 2 2 2 0 AAA domain Zeta_toxin PF06414.7 gi|57642135|ref|YP_184613.1| - 0.059 12.4 0.1 0.11 11.5 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin Pribosyltran PF00156.22 gi|57642135|ref|YP_184613.1| - 0.06 13.0 0.1 1.2 8.8 0.0 2.6 2 0 0 2 2 2 0 Phosphoribosyl transferase domain DUF2325 PF10087.4 gi|57642135|ref|YP_184613.1| - 0.073 12.9 0.2 2.6 7.9 0.0 3.1 3 0 0 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2325) AAA_17 PF13207.1 gi|57642135|ref|YP_184613.1| - 0.078 13.7 0.0 0.24 12.2 0.0 1.9 1 0 0 1 1 1 0 AAA domain UPF0180 PF03698.8 gi|57642135|ref|YP_184613.1| - 0.085 12.7 0.0 1.6 8.6 0.0 2.7 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0180) Thymidylate_kin PF02223.12 gi|57642135|ref|YP_184613.1| - 0.098 12.0 0.1 0.23 10.7 0.0 1.6 2 0 0 2 2 2 0 Thymidylate kinase AAA_5 PF07728.9 gi|57642135|ref|YP_184613.1| - 0.13 11.9 0.0 1.4 8.6 0.0 2.3 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) Dpoe2NT PF12213.3 gi|57642135|ref|YP_184613.1| - 1.7 8.6 4.5 2.3 8.1 0.1 2.7 3 0 0 3 3 3 0 DNA polymerases epsilon N terminal DUF2179 PF10035.4 gi|57642135|ref|YP_184613.1| - 2.1 8.0 4.6 8.6 6.0 0.1 3.2 3 0 0 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2179) AAA_14 PF13173.1 gi|57642137|ref|YP_184615.1| - 3.8e-31 107.6 0.0 9.3e-31 106.3 0.0 1.7 2 0 0 2 2 2 1 AAA domain DUF4143 PF13635.1 gi|57642137|ref|YP_184615.1| - 2.3e-09 37.2 0.1 4.3e-09 36.4 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4143) Podovirus_Gp16 PF05894.7 gi|57642137|ref|YP_184615.1| - 1.1e-06 28.2 0.0 2.3e-06 27.1 0.0 1.4 1 0 0 1 1 1 1 Podovirus DNA encapsidation protein (Gp16) Arch_ATPase PF01637.13 gi|57642137|ref|YP_184615.1| - 0.00019 21.1 0.0 0.00071 19.3 0.0 2.0 1 1 0 1 1 1 1 Archaeal ATPase AAA_25 PF13481.1 gi|57642137|ref|YP_184615.1| - 0.017 14.5 0.0 0.036 13.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|57642137|ref|YP_184615.1| - 0.018 14.4 0.0 0.043 13.2 0.0 1.7 2 0 0 2 2 2 0 AAA-like domain KdpD PF02702.12 gi|57642137|ref|YP_184615.1| - 0.042 12.9 0.0 0.078 12.0 0.0 1.4 1 0 0 1 1 1 0 Osmosensitive K+ channel His kinase sensor domain AAA_16 PF13191.1 gi|57642137|ref|YP_184615.1| - 0.14 12.1 0.0 0.31 11.0 0.0 1.6 1 1 0 1 1 1 0 AAA ATPase domain LigB PF02900.13 gi|57642138|ref|YP_184616.1| - 1.2e-12 47.4 0.0 1.4e-12 47.1 0.0 1.0 1 0 0 1 1 1 1 Catalytic LigB subunit of aromatic ring-opening dioxygenase Phosphodiest PF01663.17 gi|57642138|ref|YP_184616.1| - 0.16 11.2 0.0 0.32 10.2 0.0 1.4 1 1 0 2 2 2 0 Type I phosphodiesterase / nucleotide pyrophosphatase PALP PF00291.20 gi|57642140|ref|YP_184618.1| - 7.9e-72 242.0 0.1 9.1e-72 241.8 0.0 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme F420_oxidored PF03807.12 gi|57642140|ref|YP_184618.1| - 0.05 14.0 1.0 0.1 13.0 0.2 1.9 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent DFP PF04127.10 gi|57642140|ref|YP_184618.1| - 0.16 11.6 0.5 0.31 10.6 0.4 1.4 1 0 0 1 1 1 0 DNA / pantothenate metabolism flavoprotein DUF4157 PF13699.1 gi|57642141|ref|YP_184619.1| - 4.8e-08 33.0 0.0 8.6e-08 32.2 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4157) Peptidase_MA_2 PF13485.1 gi|57642141|ref|YP_184619.1| - 0.0002 21.4 0.0 0.0035 17.3 0.0 2.2 1 1 0 1 1 1 1 Peptidase MA superfamily Proteasome PF00227.21 gi|57642142|ref|YP_184620.1| - 2.9e-51 173.4 0.0 3.3e-51 173.2 0.0 1.0 1 0 0 1 1 1 1 Proteasome subunit Colicin PF01024.14 gi|57642142|ref|YP_184620.1| - 0.09 12.3 0.0 0.13 11.7 0.0 1.2 1 0 0 1 1 1 0 Colicin pore forming domain Acetyltransf_4 PF13420.1 gi|57642142|ref|YP_184620.1| - 0.12 12.3 0.0 0.22 11.4 0.0 1.4 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain ABC_tran PF00005.22 gi|57642143|ref|YP_184621.1| - 1.1e-26 93.7 0.0 1.6e-26 93.2 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|57642143|ref|YP_184621.1| - 2.6e-10 40.7 0.7 4.3e-06 26.8 0.0 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|57642143|ref|YP_184621.1| - 2.1e-08 33.6 0.3 0.0028 16.8 0.0 2.1 1 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|57642143|ref|YP_184621.1| - 2.3e-05 23.8 0.0 4.6e-05 22.8 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|57642143|ref|YP_184621.1| - 2.4e-05 24.7 0.0 3.4e-05 24.2 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|57642143|ref|YP_184621.1| - 0.00028 20.9 0.3 0.00069 19.6 0.2 1.6 1 1 0 1 1 1 1 AAA ATPase domain Mg_chelatase PF01078.16 gi|57642143|ref|YP_184621.1| - 0.00038 19.6 0.0 0.00059 19.0 0.0 1.3 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI SbcCD_C PF13558.1 gi|57642143|ref|YP_184621.1| - 0.0004 20.2 0.1 0.0039 17.0 0.0 2.1 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit ABC_ATPase PF09818.4 gi|57642143|ref|YP_184621.1| - 0.00073 18.2 0.3 0.17 10.4 0.0 2.3 2 1 0 2 2 2 2 Predicted ATPase of the ABC class AAA_15 PF13175.1 gi|57642143|ref|YP_184621.1| - 0.00086 18.4 0.0 0.02 13.9 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_33 PF13671.1 gi|57642143|ref|YP_184621.1| - 0.0019 18.0 0.1 0.012 15.5 0.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|57642143|ref|YP_184621.1| - 0.0031 17.6 0.6 0.016 15.3 0.4 2.0 1 1 0 1 1 1 1 AAA domain MobB PF03205.9 gi|57642143|ref|YP_184621.1| - 0.0043 16.7 0.1 0.014 15.0 0.1 1.8 1 1 1 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_30 PF13604.1 gi|57642143|ref|YP_184621.1| - 0.0045 16.5 0.0 0.0085 15.6 0.0 1.4 1 0 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|57642143|ref|YP_184621.1| - 0.0051 16.0 0.0 0.008 15.3 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_25 PF13481.1 gi|57642143|ref|YP_184621.1| - 0.0059 16.0 0.1 0.015 14.7 0.0 1.7 2 0 0 2 2 2 1 AAA domain MutS_V PF00488.16 gi|57642143|ref|YP_184621.1| - 0.0084 15.5 0.0 0.013 14.8 0.0 1.3 1 0 0 1 1 1 1 MutS domain V HD_4 PF13328.1 gi|57642143|ref|YP_184621.1| - 0.011 15.5 0.1 0.016 14.9 0.0 1.3 1 0 0 1 1 1 0 HD domain AAA_10 PF12846.2 gi|57642143|ref|YP_184621.1| - 0.014 14.8 0.3 0.031 13.7 0.1 1.6 2 0 0 2 2 2 0 AAA-like domain AAA_17 PF13207.1 gi|57642143|ref|YP_184621.1| - 0.016 15.9 1.6 0.041 14.7 1.1 2.0 1 1 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|57642143|ref|YP_184621.1| - 0.017 14.7 0.2 0.037 13.6 0.1 1.5 1 0 0 1 1 1 0 NACHT domain GTP_EFTU PF00009.22 gi|57642143|ref|YP_184621.1| - 0.018 14.5 0.0 0.03 13.7 0.0 1.3 1 0 0 1 1 1 0 Elongation factor Tu GTP binding domain MMR_HSR1 PF01926.18 gi|57642143|ref|YP_184621.1| - 0.019 14.9 0.4 0.038 13.9 0.3 1.8 1 1 0 1 1 1 0 50S ribosome-binding GTPase ArgK PF03308.11 gi|57642143|ref|YP_184621.1| - 0.019 13.7 0.0 0.036 12.8 0.0 1.4 1 0 0 1 1 1 0 ArgK protein AAA_14 PF13173.1 gi|57642143|ref|YP_184621.1| - 0.027 14.3 0.0 0.068 13.0 0.0 1.8 2 0 0 2 2 2 0 AAA domain Rad17 PF03215.10 gi|57642143|ref|YP_184621.1| - 0.032 12.9 0.0 0.042 12.5 0.0 1.2 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA_19 PF13245.1 gi|57642143|ref|YP_184621.1| - 0.038 13.7 0.3 0.21 11.3 0.0 2.1 2 0 0 2 2 2 0 Part of AAA domain Arch_ATPase PF01637.13 gi|57642143|ref|YP_184621.1| - 0.038 13.6 0.1 0.081 12.6 0.0 1.6 2 0 0 2 2 2 0 Archaeal ATPase Miro PF08477.8 gi|57642143|ref|YP_184621.1| - 0.041 14.3 0.0 0.08 13.4 0.0 1.5 1 0 0 1 1 1 0 Miro-like protein Dynamin_N PF00350.18 gi|57642143|ref|YP_184621.1| - 0.043 13.6 0.1 0.092 12.5 0.0 1.6 2 0 0 2 2 2 0 Dynamin family AAA PF00004.24 gi|57642143|ref|YP_184621.1| - 0.093 12.9 0.0 0.2 11.8 0.0 1.6 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) ATP_bind_1 PF03029.12 gi|57642143|ref|YP_184621.1| - 0.13 11.7 0.0 0.25 10.8 0.0 1.5 2 0 0 2 2 1 0 Conserved hypothetical ATP binding protein NTPase_1 PF03266.10 gi|57642143|ref|YP_184621.1| - 0.15 11.7 0.3 1.5 8.4 0.1 2.3 2 0 0 2 2 2 0 NTPase AAA_13 PF13166.1 gi|57642143|ref|YP_184621.1| - 0.19 10.1 0.0 5.6 5.2 0.0 2.0 2 0 0 2 2 2 0 AAA domain FecCD PF01032.13 gi|57642144|ref|YP_184622.1| - 3.2e-85 285.6 25.1 4e-85 285.3 17.4 1.0 1 0 0 1 1 1 1 FecCD transport family MNHE PF01899.11 gi|57642144|ref|YP_184622.1| - 0.053 13.1 0.3 0.053 13.1 0.2 3.1 1 1 1 3 3 3 0 Na+/H+ ion antiporter subunit NurA PF09376.5 gi|57642145|ref|YP_184623.1| - 2.2e-72 243.5 2.7 2.8e-72 243.1 1.9 1.1 1 0 0 1 1 1 1 NurA domain PqqD PF05402.7 gi|57642145|ref|YP_184623.1| - 0.0016 18.3 1.0 0.04 13.9 0.1 2.6 2 0 0 2 2 2 1 Coenzyme PQQ synthesis protein D (PqqD) AAA_13 PF13166.1 gi|57642146|ref|YP_184624.1| - 5.8e-18 64.7 77.5 9.9e-06 24.3 5.3 5.6 2 1 3 5 5 5 5 AAA domain Rad50_zn_hook PF04423.9 gi|57642146|ref|YP_184624.1| - 6.8e-17 60.6 5.1 6.8e-17 60.6 3.5 10.8 13 2 0 13 13 9 1 Rad50 zinc hook motif SMC_N PF02463.14 gi|57642146|ref|YP_184624.1| - 4.1e-13 49.0 38.4 5.3e-10 38.9 0.2 2.5 2 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_21 PF13304.1 gi|57642146|ref|YP_184624.1| - 4.5e-09 36.6 43.8 0.0012 18.8 9.5 5.0 1 1 1 3 3 3 2 AAA domain NPV_P10 PF05531.7 gi|57642146|ref|YP_184624.1| - 1.7e-08 34.5 21.9 0.032 14.4 0.1 8.4 3 3 4 7 7 7 1 Nucleopolyhedrovirus P10 protein AAA_23 PF13476.1 gi|57642146|ref|YP_184624.1| - 6.9e-08 33.0 151.6 4.4 7.5 59.5 7.8 1 1 2 3 3 1 0 AAA domain Spc7 PF08317.6 gi|57642146|ref|YP_184624.1| - 1.1e-07 30.8 112.5 0.0058 15.3 11.9 5.4 1 1 4 5 5 5 5 Spc7 kinetochore protein AAA_27 PF13514.1 gi|57642146|ref|YP_184624.1| - 4.5e-07 28.0 104.0 1.4e-06 26.3 0.0 5.6 2 1 2 5 5 4 2 AAA domain ABC_tran PF00005.22 gi|57642146|ref|YP_184624.1| - 4.6e-07 30.2 11.3 0.012 15.9 2.7 5.4 1 1 0 2 2 2 2 ABC transporter Baculo_PEP_C PF04513.7 gi|57642146|ref|YP_184624.1| - 1.3e-06 28.2 16.3 0.58 9.9 0.0 6.2 3 2 3 6 6 6 3 Baculovirus polyhedron envelope protein, PEP, C terminus MCPsignal PF00015.16 gi|57642146|ref|YP_184624.1| - 2.5e-06 27.1 20.0 0.047 13.2 0.7 5.1 2 1 3 5 5 5 4 Methyl-accepting chemotaxis protein (MCP) signalling domain AAA_29 PF13555.1 gi|57642146|ref|YP_184624.1| - 2.7e-06 26.8 0.0 5.1e-06 25.9 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain Reo_sigmaC PF04582.7 gi|57642146|ref|YP_184624.1| - 3e-06 26.6 13.1 0.05 12.7 0.3 5.5 2 2 5 7 7 7 3 Reovirus sigma C capsid protein DUF3584 PF12128.3 gi|57642146|ref|YP_184624.1| - 6.7e-06 23.7 27.8 6.7e-06 23.7 19.2 3.3 3 1 1 4 4 4 2 Protein of unknown function (DUF3584) SbcCD_C PF13558.1 gi|57642146|ref|YP_184624.1| - 1.9e-05 24.4 0.0 4.8e-05 23.1 0.0 1.7 1 0 0 1 1 1 1 Putative exonuclease SbcCD, C subunit IncA PF04156.9 gi|57642146|ref|YP_184624.1| - 2.5e-05 23.9 127.7 0.51 9.8 11.4 7.1 1 1 5 6 6 6 5 IncA protein AAA_15 PF13175.1 gi|57642146|ref|YP_184624.1| - 3.5e-05 23.0 28.9 3.5e-05 23.0 20.1 3.7 1 1 2 3 3 1 1 AAA ATPase domain EzrA PF06160.7 gi|57642146|ref|YP_184624.1| - 0.0002 19.6 9.6 0.0002 19.6 6.6 7.4 1 1 4 5 5 5 2 Septation ring formation regulator, EzrA Fib_alpha PF08702.5 gi|57642146|ref|YP_184624.1| - 0.0025 17.9 51.7 0.066 13.3 4.6 5.5 3 1 1 5 5 5 3 Fibrinogen alpha/beta chain family DUF1664 PF07889.7 gi|57642146|ref|YP_184624.1| - 0.0032 17.2 0.4 0.0032 17.2 0.3 7.7 2 2 2 7 7 7 2 Protein of unknown function (DUF1664) Tropomyosin_1 PF12718.2 gi|57642146|ref|YP_184624.1| - 0.0036 17.1 26.9 0.0036 17.1 18.7 6.5 2 1 3 6 6 4 2 Tropomyosin like GAS PF13851.1 gi|57642146|ref|YP_184624.1| - 0.028 13.6 130.1 0.024 13.8 8.1 7.2 1 1 6 8 8 8 0 Growth-arrest specific micro-tubule binding FtsK_SpoIIIE PF01580.13 gi|57642146|ref|YP_184624.1| - 0.045 13.2 0.0 0.045 13.2 0.0 4.4 3 1 0 3 3 3 0 FtsK/SpoIIIE family Syntaxin-6_N PF09177.6 gi|57642146|ref|YP_184624.1| - 0.08 13.3 68.2 0.64 10.4 0.3 8.7 3 3 4 7 7 7 0 Syntaxin 6, N-terminal DASH_Dam1 PF08653.5 gi|57642146|ref|YP_184624.1| - 0.13 12.0 10.8 37 4.1 0.1 7.2 7 3 0 7 7 7 0 DASH complex subunit Dam1 Mnd1 PF03962.10 gi|57642146|ref|YP_184624.1| - 0.16 11.6 107.5 0.032 13.8 10.0 7.8 1 1 6 7 7 7 0 Mnd1 family Seryl_tRNA_N PF02403.17 gi|57642146|ref|YP_184624.1| - 0.16 12.0 127.1 0.11 12.5 1.4 8.2 3 3 4 7 7 7 0 Seryl-tRNA synthetase N-terminal domain DEAD PF00270.24 gi|57642146|ref|YP_184624.1| - 0.16 11.4 2.1 0.43 10.0 0.0 2.8 3 0 0 3 3 3 0 DEAD/DEAH box helicase Spectrin PF00435.16 gi|57642146|ref|YP_184624.1| - 0.19 12.0 93.4 0.022 15.0 6.6 7.9 2 2 5 8 8 8 0 Spectrin repeat Laminin_II PF06009.7 gi|57642146|ref|YP_184624.1| - 0.21 11.3 69.8 0.1 12.3 1.4 7.4 3 3 5 8 8 8 0 Laminin Domain II PilJ PF13675.1 gi|57642146|ref|YP_184624.1| - 0.33 11.2 36.2 5.5 7.3 1.7 7.9 1 1 3 4 4 3 0 Type IV pili methyl-accepting chemotaxis transducer N-term Meckelin PF09773.4 gi|57642146|ref|YP_184624.1| - 0.35 8.5 1.2 0.53 7.9 0.9 1.1 1 0 0 1 1 1 0 Meckelin (Transmembrane protein 67) Laminin_I PF06008.9 gi|57642146|ref|YP_184624.1| - 0.4 9.9 90.2 0.0079 15.5 14.0 5.3 1 1 3 5 5 5 0 Laminin Domain I APG6 PF04111.7 gi|57642146|ref|YP_184624.1| - 0.94 8.4 119.4 0.23 10.4 7.5 6.4 1 1 5 6 6 6 0 Autophagy protein Apg6 Metallophos PF00149.23 gi|57642147|ref|YP_184625.1| - 2.7e-27 95.4 0.0 5.5e-27 94.4 0.0 1.5 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.2 gi|57642147|ref|YP_184625.1| - 7.5e-16 58.3 0.0 1.2e-15 57.6 0.0 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Mss4 PF04421.8 gi|57642147|ref|YP_184625.1| - 0.12 12.2 0.1 0.33 10.8 0.0 1.7 2 0 0 2 2 2 0 Mss4 protein DUF87 PF01935.12 gi|57642148|ref|YP_184626.1| - 2.6e-54 184.4 0.0 5.3e-54 183.4 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function DUF87 HAS-barrel PF09378.5 gi|57642148|ref|YP_184626.1| - 2.5e-21 75.3 0.1 8.9e-21 73.5 0.1 2.0 1 0 0 1 1 1 1 HAS barrel domain AAA_10 PF12846.2 gi|57642148|ref|YP_184626.1| - 4.4e-21 75.6 0.0 2.5e-19 69.8 0.0 2.2 1 1 0 1 1 1 1 AAA-like domain DUF853 PF05872.7 gi|57642148|ref|YP_184626.1| - 5e-08 31.7 0.0 0.0027 16.1 0.0 2.2 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) TrwB_AAD_bind PF10412.4 gi|57642148|ref|YP_184626.1| - 6.4e-07 28.3 0.0 0.00014 20.5 0.0 2.2 2 0 0 2 2 2 2 Type IV secretion-system coupling protein DNA-binding domain FtsK_SpoIIIE PF01580.13 gi|57642148|ref|YP_184626.1| - 0.00025 20.5 0.1 0.2 11.1 0.0 2.3 2 0 0 2 2 2 2 FtsK/SpoIIIE family Acetyltransf_1 PF00583.19 gi|57642149|ref|YP_184627.1| - 2.5e-25 88.3 0.6 3.8e-25 87.7 0.4 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|57642149|ref|YP_184627.1| - 1.5e-15 57.3 0.0 2.5e-15 56.6 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|57642149|ref|YP_184627.1| - 2e-15 56.6 0.1 3.4e-15 55.9 0.1 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|57642149|ref|YP_184627.1| - 1.1e-12 48.0 0.0 1.9e-12 47.2 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|57642149|ref|YP_184627.1| - 1.6e-11 43.7 0.1 2.5e-11 43.1 0.0 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.1 gi|57642149|ref|YP_184627.1| - 6.3e-11 42.2 0.0 2.4e-10 40.3 0.0 1.8 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|57642149|ref|YP_184627.1| - 7.4e-11 42.2 0.0 9.1e-11 41.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.1 gi|57642149|ref|YP_184627.1| - 9.4e-07 28.8 0.0 1.5e-06 28.2 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|57642149|ref|YP_184627.1| - 3.2e-06 27.3 0.0 4.4e-06 26.9 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|57642149|ref|YP_184627.1| - 0.00018 21.3 0.0 0.00028 20.6 0.0 1.3 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase DUF3749 PF12568.3 gi|57642149|ref|YP_184627.1| - 0.076 12.6 0.1 0.089 12.3 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain tRNA_int_endo PF01974.12 gi|57642150|ref|YP_184628.1| - 3.3e-32 110.1 0.2 4.8e-32 109.6 0.1 1.2 1 0 0 1 1 1 1 tRNA intron endonuclease, catalytic C-terminal domain tRNA_int_endo_N PF02778.9 gi|57642150|ref|YP_184628.1| - 1.2e-20 72.7 2.5 1.9e-20 72.1 0.3 2.1 2 0 0 2 2 2 1 tRNA intron endonuclease, N-terminal domain tRNA_int_end_N2 PF12928.2 gi|57642150|ref|YP_184628.1| - 0.00081 18.7 0.0 0.0019 17.5 0.0 1.7 1 0 0 1 1 1 1 tRNA-splicing endonuclease subunit sen54 N-term Sen15 PF09631.5 gi|57642150|ref|YP_184628.1| - 0.015 15.5 0.0 0.024 14.8 0.0 1.5 1 1 0 1 1 1 0 Sen15 protein DUF835 PF05763.7 gi|57642151|ref|YP_184629.1| - 5.1e-39 132.9 0.0 6.7e-39 132.5 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF835) Aminotran_1_2 PF00155.16 gi|57642152|ref|YP_184630.1| - 7.3e-70 235.7 0.0 8.4e-70 235.5 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.15 gi|57642152|ref|YP_184630.1| - 1.2e-05 23.7 0.0 1.9e-05 23.1 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.16 gi|57642152|ref|YP_184630.1| - 3.5e-05 23.0 0.0 5.4e-05 22.4 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.14 gi|57642152|ref|YP_184630.1| - 0.00015 20.5 0.0 0.00026 19.8 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.12 gi|57642152|ref|YP_184630.1| - 0.0039 16.2 0.0 0.048 12.6 0.0 2.1 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family LAGLIDADG_3 PF14528.1 gi|57642153|ref|YP_184631.1| - 8.4e-26 90.0 0.1 5e-18 65.1 0.1 3.2 3 0 0 3 3 3 2 LAGLIDADG-like domain Rep_fac_C PF08542.6 gi|57642153|ref|YP_184631.1| - 4.7e-23 80.9 0.2 3e-22 78.3 0.0 2.4 2 0 0 2 2 2 1 Replication factor C C-terminal domain Intein_splicing PF14890.1 gi|57642153|ref|YP_184631.1| - 1.9e-18 66.4 0.0 1.1e-16 60.6 0.0 2.6 1 1 0 1 1 1 1 Intein splicing domain DNA_pol3_delta2 PF13177.1 gi|57642153|ref|YP_184631.1| - 2.5e-13 49.9 0.1 3.1e-11 43.2 0.1 2.6 2 0 0 2 2 2 1 DNA polymerase III, delta subunit AAA PF00004.24 gi|57642153|ref|YP_184631.1| - 9.5e-13 48.4 0.6 1.2e-09 38.4 0.0 2.9 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) HTH_3 PF01381.17 gi|57642153|ref|YP_184631.1| - 1.1e-07 31.6 0.1 3.3e-07 30.0 0.1 1.9 1 0 0 1 1 1 1 Helix-turn-helix RuvB_N PF05496.7 gi|57642153|ref|YP_184631.1| - 2.3e-07 30.0 0.2 5.5e-06 25.5 0.0 3.0 3 0 0 3 3 3 1 Holliday junction DNA helicase ruvB N-terminus HTH_19 PF12844.2 gi|57642153|ref|YP_184631.1| - 6.2e-06 26.1 0.6 2.4e-05 24.2 0.1 2.3 2 0 0 2 2 1 1 Helix-turn-helix domain DNA_pol3_delta PF06144.8 gi|57642153|ref|YP_184631.1| - 6.2e-06 25.8 0.2 2.2e-05 24.0 0.0 1.9 2 0 0 2 2 2 1 DNA polymerase III, delta subunit Rad17 PF03215.10 gi|57642153|ref|YP_184631.1| - 2.4e-05 23.2 0.1 0.0041 15.8 0.0 2.4 2 0 0 2 2 2 1 Rad17 cell cycle checkpoint protein AAA_16 PF13191.1 gi|57642153|ref|YP_184631.1| - 0.0015 18.5 0.5 0.15 12.0 0.0 3.1 3 0 0 3 3 3 1 AAA ATPase domain AAA_22 PF13401.1 gi|57642153|ref|YP_184631.1| - 0.0017 18.4 0.2 0.053 13.6 0.0 2.9 2 0 0 2 2 2 1 AAA domain HTH_31 PF13560.1 gi|57642153|ref|YP_184631.1| - 0.0025 17.9 0.0 0.0088 16.2 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain Mg_chelatase PF01078.16 gi|57642153|ref|YP_184631.1| - 0.0036 16.5 0.0 0.69 9.0 0.0 2.3 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI DUF4364 PF14277.1 gi|57642153|ref|YP_184631.1| - 0.0056 16.3 0.2 0.043 13.4 0.0 2.3 2 0 0 2 2 2 1 Domain of unknown function (DUF4364) PT-HINT PF07591.6 gi|57642153|ref|YP_184631.1| - 0.0079 16.0 0.1 0.32 10.8 0.0 2.5 2 0 0 2 2 2 1 Pretoxin HINT domain LAGLIDADG_WhiA PF14527.1 gi|57642153|ref|YP_184631.1| - 0.016 15.0 0.4 0.14 11.9 0.0 2.8 3 0 0 3 3 2 0 WhiA LAGLIDADG-like domain Hint PF01079.15 gi|57642153|ref|YP_184631.1| - 0.027 13.6 0.0 0.098 11.8 0.0 1.8 2 0 0 2 2 2 0 Hint module Inhibitor_I29 PF08246.7 gi|57642153|ref|YP_184631.1| - 0.03 14.5 0.3 0.75 10.1 0.0 2.7 2 0 0 2 2 2 0 Cathepsin propeptide inhibitor domain (I29) ArgK PF03308.11 gi|57642153|ref|YP_184631.1| - 0.046 12.4 0.1 0.33 9.7 0.0 2.1 2 0 0 2 2 2 0 ArgK protein Vint PF14623.1 gi|57642153|ref|YP_184631.1| - 0.096 12.1 0.0 0.33 10.4 0.0 1.9 1 1 0 1 1 1 0 Hint-domain TPR_14 PF13428.1 gi|57642153|ref|YP_184631.1| - 0.74 10.6 3.8 0.94 10.3 0.1 3.1 4 0 0 4 4 1 0 Tetratricopeptide repeat Rad17 PF03215.10 gi|57642154|ref|YP_184632.1| - 9.8e-17 60.8 0.0 3.3e-12 45.8 0.0 2.9 2 1 0 3 3 3 2 Rad17 cell cycle checkpoint protein AAA PF00004.24 gi|57642154|ref|YP_184632.1| - 2.5e-16 60.0 0.0 1.2e-15 57.9 0.0 2.2 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.1 gi|57642154|ref|YP_184632.1| - 9.3e-10 38.4 0.0 2.5e-09 37.0 0.0 1.8 1 0 0 1 1 1 1 AAA domain RuvB_N PF05496.7 gi|57642154|ref|YP_184632.1| - 1.8e-08 33.7 0.1 2.2e-07 30.1 0.0 2.2 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus AAA_17 PF13207.1 gi|57642154|ref|YP_184632.1| - 1.7e-07 32.0 0.1 1.7e-07 32.0 0.1 3.0 2 2 0 2 2 1 1 AAA domain AAA_22 PF13401.1 gi|57642154|ref|YP_184632.1| - 3.4e-07 30.4 0.2 0.00096 19.3 0.0 3.3 1 1 2 3 3 3 2 AAA domain AAA_16 PF13191.1 gi|57642154|ref|YP_184632.1| - 4.6e-06 26.7 4.3 0.00027 20.9 0.0 3.0 2 1 1 3 3 2 1 AAA ATPase domain AAA_5 PF07728.9 gi|57642154|ref|YP_184632.1| - 6.2e-06 25.9 0.1 5.8e-05 22.8 0.0 2.5 2 1 0 3 3 2 1 AAA domain (dynein-related subfamily) DUF815 PF05673.8 gi|57642154|ref|YP_184632.1| - 1e-05 24.6 0.1 0.00038 19.4 0.0 2.5 3 0 0 3 3 3 1 Protein of unknown function (DUF815) DNA_pol3_delta PF06144.8 gi|57642154|ref|YP_184632.1| - 0.00014 21.4 0.5 0.00059 19.3 0.0 2.4 2 1 0 2 2 2 1 DNA polymerase III, delta subunit Zeta_toxin PF06414.7 gi|57642154|ref|YP_184632.1| - 0.00016 20.8 0.0 0.00044 19.4 0.0 1.9 1 1 0 1 1 1 1 Zeta toxin AAA_19 PF13245.1 gi|57642154|ref|YP_184632.1| - 0.0019 17.8 0.0 0.0055 16.4 0.0 1.8 1 0 0 1 1 1 1 Part of AAA domain AAA_18 PF13238.1 gi|57642154|ref|YP_184632.1| - 0.0033 17.7 0.0 0.0033 17.7 0.0 2.8 2 2 0 2 2 1 1 AAA domain DUF3627 PF12299.3 gi|57642154|ref|YP_184632.1| - 0.0041 17.1 0.0 0.011 15.7 0.0 1.8 1 0 0 1 1 1 1 Protein of unknown function (DUF3627) AAA_33 PF13671.1 gi|57642154|ref|YP_184632.1| - 0.0054 16.6 0.0 0.015 15.1 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|57642154|ref|YP_184632.1| - 0.011 15.1 0.0 0.011 15.1 0.0 2.6 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.1 gi|57642154|ref|YP_184632.1| - 0.014 15.3 0.0 0.014 15.3 0.0 2.7 3 0 0 3 3 3 0 AAA domain T2SE PF00437.15 gi|57642154|ref|YP_184632.1| - 0.017 14.0 0.0 0.048 12.5 0.0 1.7 1 0 0 1 1 1 0 Type II/IV secretion system protein IstB_IS21 PF01695.12 gi|57642154|ref|YP_184632.1| - 0.03 13.7 0.1 0.093 12.1 0.0 1.9 1 1 0 1 1 1 0 IstB-like ATP binding protein AAA_10 PF12846.2 gi|57642154|ref|YP_184632.1| - 0.035 13.5 1.0 8.2 5.7 0.0 3.2 3 1 0 3 3 3 0 AAA-like domain AAA_29 PF13555.1 gi|57642154|ref|YP_184632.1| - 0.039 13.4 0.0 0.097 12.2 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF258 PF03193.11 gi|57642154|ref|YP_184632.1| - 0.04 13.1 0.0 0.085 12.0 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function, DUF258 Miro PF08477.8 gi|57642154|ref|YP_184632.1| - 0.057 13.9 0.0 0.21 12.1 0.0 2.0 1 0 0 1 1 1 0 Miro-like protein AAA_11 PF13086.1 gi|57642154|ref|YP_184632.1| - 0.058 12.9 0.0 0.058 12.9 0.0 2.5 2 1 0 2 2 1 0 AAA domain RNA_helicase PF00910.17 gi|57642154|ref|YP_184632.1| - 0.058 13.5 0.0 0.23 11.6 0.0 2.1 2 0 0 2 2 2 0 RNA helicase Sigma54_activ_2 PF14532.1 gi|57642154|ref|YP_184632.1| - 0.062 13.3 0.0 0.31 11.1 0.0 2.1 2 0 0 2 2 2 0 Sigma-54 interaction domain HrcA_DNA-bdg PF03444.10 gi|57642154|ref|YP_184632.1| - 0.084 12.3 0.1 0.36 10.3 0.1 2.1 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding PPV_E1_C PF00519.12 gi|57642154|ref|YP_184632.1| - 0.091 11.3 0.0 0.18 10.4 0.0 1.4 1 0 0 1 1 1 0 Papillomavirus helicase MMR_HSR1 PF01926.18 gi|57642154|ref|YP_184632.1| - 0.11 12.4 0.0 0.76 9.7 0.0 2.5 1 1 0 1 1 1 0 50S ribosome-binding GTPase ABC_tran PF00005.22 gi|57642154|ref|YP_184632.1| - 0.12 12.7 1.7 1.4 9.1 0.0 2.9 2 1 1 3 3 3 0 ABC transporter PIN PF01850.16 gi|57642154|ref|YP_184632.1| - 4.3 7.6 11.2 0.22 11.8 0.2 3.7 3 1 1 4 4 4 0 PIN domain AAA_14 PF13173.1 gi|57642155|ref|YP_184633.1| - 1.5e-32 112.1 0.0 3e-32 111.2 0.0 1.5 1 0 0 1 1 1 1 AAA domain DUF4143 PF13635.1 gi|57642155|ref|YP_184633.1| - 2.4e-13 50.0 0.0 4.2e-13 49.2 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4143) Arch_ATPase PF01637.13 gi|57642155|ref|YP_184633.1| - 4.6e-07 29.7 0.1 0.0049 16.6 0.0 2.5 1 1 1 2 2 2 2 Archaeal ATPase AAA_22 PF13401.1 gi|57642155|ref|YP_184633.1| - 6.1e-05 23.1 0.0 0.00057 20.0 0.0 2.3 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|57642155|ref|YP_184633.1| - 0.00036 20.5 0.5 0.025 14.5 0.0 3.0 2 2 1 3 3 3 1 AAA ATPase domain MobB PF03205.9 gi|57642155|ref|YP_184633.1| - 0.011 15.4 0.0 0.052 13.2 0.0 2.1 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B KaiC PF06745.8 gi|57642155|ref|YP_184633.1| - 0.02 14.0 0.0 0.061 12.4 0.0 1.7 1 1 1 2 2 2 0 KaiC AAA_25 PF13481.1 gi|57642155|ref|YP_184633.1| - 0.1 11.9 0.0 0.24 10.7 0.0 1.6 1 1 0 1 1 1 0 AAA domain HHH_4 PF14490.1 gi|57642156|ref|YP_184634.1| - 0.09 12.5 0.0 0.1 12.3 0.0 1.1 1 0 0 1 1 1 0 Helix-hairpin-helix containing domain DBINO PF13892.1 gi|57642156|ref|YP_184634.1| - 0.17 11.9 3.5 0.21 11.6 2.4 1.1 1 0 0 1 1 1 0 DNA-binding domain DUF1876 PF08962.6 gi|57642156|ref|YP_184634.1| - 0.21 11.3 1.2 2.1 8.2 0.0 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF1876) AAA_14 PF13173.1 gi|57642157|ref|YP_184635.1| - 3.1e-05 23.8 0.0 5.4e-05 23.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|57642157|ref|YP_184635.1| - 0.022 14.8 0.0 4.4 7.4 0.0 2.4 1 1 1 2 2 2 0 AAA domain Met_10 PF02475.11 gi|57642158|ref|YP_184636.1| - 1.4e-52 178.2 0.0 2.1e-52 177.6 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_26 PF13659.1 gi|57642158|ref|YP_184636.1| - 0.00091 19.2 0.0 0.0014 18.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|57642158|ref|YP_184636.1| - 0.0024 18.4 0.0 0.0055 17.2 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_3 PF01596.12 gi|57642158|ref|YP_184636.1| - 0.0057 15.7 0.0 0.01 14.9 0.0 1.3 1 0 0 1 1 1 1 O-methyltransferase DUF633 PF04816.7 gi|57642158|ref|YP_184636.1| - 0.011 15.0 0.0 0.018 14.3 0.0 1.3 1 0 0 1 1 1 0 Family of unknown function (DUF633) DUF835 PF05763.7 gi|57642159|ref|YP_184637.1| - 1e-35 122.2 0.0 1.4e-35 121.8 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF835) Lig_chan PF00060.21 gi|57642159|ref|YP_184637.1| - 0.014 15.1 0.0 0.084 12.5 0.0 2.2 2 1 0 2 2 2 0 Ligand-gated ion channel Radical_SAM PF04055.16 gi|57642160|ref|YP_184638.1| - 4.8e-34 117.9 1.1 2.5e-33 115.6 0.0 2.1 2 1 0 2 2 2 1 Radical SAM superfamily Mob_synth_C PF06463.8 gi|57642160|ref|YP_184638.1| - 3.3e-28 97.9 0.1 4.9e-28 97.3 0.1 1.3 1 0 0 1 1 1 1 Molybdenum Cofactor Synthesis C Fer4_12 PF13353.1 gi|57642160|ref|YP_184638.1| - 2.3e-11 43.9 0.0 5.4e-11 42.7 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|57642160|ref|YP_184638.1| - 3e-09 36.9 0.0 8.3e-09 35.4 0.0 1.7 1 0 0 1 1 1 1 4Fe-4S single cluster domain CMD PF02627.15 gi|57642160|ref|YP_184638.1| - 0.013 15.3 0.1 2.1 8.2 0.0 2.7 2 0 0 2 2 2 0 Carboxymuconolactone decarboxylase family FliH PF02108.11 gi|57642161|ref|YP_184639.1| - 0.045 13.6 0.5 0.083 12.7 0.1 1.7 2 0 0 2 2 2 0 Flagellar assembly protein FliH DUF402 PF04167.8 gi|57642162|ref|YP_184640.1| - 1.2e-22 79.4 2.5 1.2e-22 79.4 1.7 3.2 3 0 0 3 3 3 1 Protein of unknown function (DUF402) RNase_E_G PF10150.4 gi|57642162|ref|YP_184640.1| - 7.7e-11 41.7 0.0 1.2e-10 41.1 0.0 1.2 1 0 0 1 1 1 1 Ribonuclease E/G family S1 PF00575.18 gi|57642162|ref|YP_184640.1| - 0.0031 17.5 1.3 0.0079 16.2 0.1 2.3 2 0 0 2 2 2 1 S1 RNA binding domain OB_RNB PF08206.6 gi|57642162|ref|YP_184640.1| - 0.08 12.4 0.0 0.22 11.0 0.0 1.7 1 0 0 1 1 1 0 Ribonuclease B OB domain MORN_2 PF07661.8 gi|57642162|ref|YP_184640.1| - 7.4 6.9 9.5 3.6 7.9 1.5 3.4 3 0 0 3 3 3 0 MORN repeat variant PIN PF01850.16 gi|57642163|ref|YP_184641.1| - 5.8e-18 65.3 0.4 6.6e-18 65.2 0.3 1.0 1 0 0 1 1 1 1 PIN domain PIN_4 PF13638.1 gi|57642163|ref|YP_184641.1| - 0.00014 21.9 0.0 0.00021 21.4 0.0 1.3 1 0 0 1 1 1 1 PIN domain PIN_3 PF13470.1 gi|57642163|ref|YP_184641.1| - 0.056 14.1 0.1 0.079 13.6 0.0 1.6 1 1 0 1 1 1 0 PIN domain Antitoxin-MazE PF04014.13 gi|57642164|ref|YP_184642.1| - 8.3e-14 50.9 0.8 1.5e-13 50.1 0.5 1.5 1 0 0 1 1 1 1 Antidote-toxin recognition MazE DUF1905 PF08922.6 gi|57642164|ref|YP_184642.1| - 0.15 11.6 0.1 0.41 10.2 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF1905) DUF3940 PF13076.1 gi|57642165|ref|YP_184643.1| - 0.012 15.1 1.0 0.095 12.2 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3940) TFIIE_beta PF02186.10 gi|57642165|ref|YP_184643.1| - 0.03 14.3 0.1 0.038 13.9 0.0 1.1 1 0 0 1 1 1 0 TFIIE beta subunit core domain Endonuc_subdom PF09062.5 gi|57642165|ref|YP_184643.1| - 0.066 13.9 0.1 0.067 13.9 0.0 1.0 1 0 0 1 1 1 0 PI-PfuI Endonuclease subdomain Rad51 PF08423.6 gi|57642166|ref|YP_184644.1| - 1.3e-30 106.1 0.0 1.9e-30 105.5 0.0 1.3 1 1 0 1 1 1 1 Rad51 AAA_25 PF13481.1 gi|57642166|ref|YP_184644.1| - 5.6e-16 58.5 0.0 8.8e-16 57.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain KaiC PF06745.8 gi|57642166|ref|YP_184644.1| - 4.6e-11 42.2 0.0 6e-11 41.8 0.0 1.2 1 0 0 1 1 1 1 KaiC RecA PF00154.16 gi|57642166|ref|YP_184644.1| - 6e-11 41.9 0.0 8.2e-11 41.5 0.0 1.2 1 0 0 1 1 1 1 recA bacterial DNA recombination protein DnaB_C PF03796.10 gi|57642166|ref|YP_184644.1| - 3.3e-05 22.9 0.4 0.00073 18.5 0.0 2.0 2 0 0 2 2 2 1 DnaB-like helicase C terminal domain AAA_24 PF13479.1 gi|57642166|ref|YP_184644.1| - 0.00086 18.9 0.0 0.0014 18.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain PAXNEB PF05625.6 gi|57642166|ref|YP_184644.1| - 0.012 14.4 0.4 0.017 13.9 0.3 1.4 1 0 0 1 1 1 0 PAXNEB protein CobU PF02283.11 gi|57642166|ref|YP_184644.1| - 0.031 13.7 0.1 0.61 9.4 0.0 2.0 2 0 0 2 2 2 0 Cobinamide kinase / cobinamide phosphate guanyltransferase Arch_ATPase PF01637.13 gi|57642166|ref|YP_184644.1| - 0.088 12.4 0.0 0.12 11.9 0.0 1.3 1 1 0 1 1 1 0 Archaeal ATPase AAA_22 PF13401.1 gi|57642166|ref|YP_184644.1| - 0.14 12.2 0.0 0.31 11.2 0.0 1.6 1 1 0 1 1 1 0 AAA domain Lactamase_B_3 PF13483.1 gi|57642167|ref|YP_184645.1| - 3.4e-29 101.6 0.2 4.2e-29 101.3 0.1 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.2 gi|57642167|ref|YP_184645.1| - 2.9e-21 75.9 0.1 3.6e-21 75.5 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|57642167|ref|YP_184645.1| - 1e-13 51.3 1.6 1.4e-13 50.8 1.1 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily ASCH PF04266.9 gi|57642168|ref|YP_184646.1| - 3e-13 50.0 0.1 3.9e-13 49.6 0.1 1.1 1 0 0 1 1 1 1 ASCH domain DUF1614 PF07758.6 gi|57642169|ref|YP_184647.1| - 9.5e-56 188.2 9.9 1.3e-55 187.8 6.9 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1614) Pribosyltran_N PF13793.1 gi|57642170|ref|YP_184648.1| - 1.5e-21 76.2 0.0 4.2e-18 65.1 0.0 2.2 2 0 0 2 2 2 2 N-terminal domain of ribose phosphate pyrophosphokinase Pribosyl_synth PF14572.1 gi|57642170|ref|YP_184648.1| - 2.3e-16 60.0 0.6 4.5e-16 59.1 0.3 1.4 1 1 0 1 1 1 1 Phosphoribosyl synthetase-associated domain Pribosyltran PF00156.22 gi|57642170|ref|YP_184648.1| - 4.5e-16 58.7 0.8 2e-15 56.6 0.5 2.1 1 1 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|57642170|ref|YP_184648.1| - 2.2e-06 27.0 0.1 4.9e-06 25.8 0.0 1.5 2 0 0 2 2 2 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.1 gi|57642170|ref|YP_184648.1| - 0.0018 17.6 0.0 0.0026 17.1 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase NIF PF03031.13 gi|57642171|ref|YP_184649.1| - 5.2e-12 45.7 0.0 6.5e-12 45.3 0.0 1.1 1 0 0 1 1 1 1 NLI interacting factor-like phosphatase Acid_PPase PF12689.2 gi|57642171|ref|YP_184649.1| - 2.5e-08 33.7 0.0 5.3e-08 32.6 0.0 1.5 1 1 0 1 1 1 1 Acid Phosphatase HAD_2 PF13419.1 gi|57642171|ref|YP_184649.1| - 0.002 18.4 0.4 0.09 12.9 0.0 2.2 1 1 1 2 2 2 1 Haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|57642171|ref|YP_184649.1| - 0.0082 16.3 0.4 0.37 10.9 0.0 2.2 1 1 1 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|57642171|ref|YP_184649.1| - 0.084 13.2 0.0 1.8 8.8 0.0 2.0 1 1 1 2 2 2 0 haloacid dehalogenase-like hydrolase DUF366 PF04017.7 gi|57642172|ref|YP_184650.1| - 1.2e-79 265.8 2.5 1.3e-79 265.7 1.7 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF366) BPL_LplA_LipB PF03099.14 gi|57642172|ref|YP_184650.1| - 0.007 16.3 0.1 0.011 15.7 0.0 1.3 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family PLDc_N PF13396.1 gi|57642173|ref|YP_184651.1| - 0.11 12.2 5.8 0.89 9.2 4.0 2.5 1 1 0 1 1 1 0 Phospholipase_D-nuclease N-terminal CTP_transf_1 PF01148.15 gi|57642173|ref|YP_184651.1| - 0.16 11.5 9.7 1.7 8.2 6.7 2.2 1 1 0 1 1 1 0 Cytidylyltransferase family DUF4346 PF14251.1 gi|57642174|ref|YP_184652.1| - 0.087 12.5 0.0 0.15 11.7 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4346) tRNA-synt_1f PF01921.13 gi|57642175|ref|YP_184653.1| - 9.2e-141 468.6 0.5 1.4e-140 468.1 0.4 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (K) tRNA-synt_1g PF09334.6 gi|57642175|ref|YP_184653.1| - 6.8e-06 24.9 1.3 0.023 13.3 0.0 3.5 3 0 0 3 3 3 2 tRNA synthetases class I (M) tRNA-synt_1e PF01406.14 gi|57642175|ref|YP_184653.1| - 0.001 18.2 0.0 0.67 9.0 0.0 2.6 3 0 0 3 3 3 2 tRNA synthetases class I (C) catalytic domain Terminase_GpA PF05876.7 gi|57642175|ref|YP_184653.1| - 0.0013 17.1 1.8 0.0022 16.4 1.3 1.3 1 0 0 1 1 1 1 Phage terminase large subunit (GpA) tRNA-synt_1b PF00579.20 gi|57642175|ref|YP_184653.1| - 0.0043 16.2 0.0 0.25 10.4 0.0 2.1 2 0 0 2 2 2 1 tRNA synthetases class I (W and Y) DUF2296 PF10058.4 gi|57642175|ref|YP_184653.1| - 0.0082 15.8 0.5 0.019 14.7 0.4 1.5 1 0 0 1 1 1 1 Predicted integral membrane metal-binding protein (DUF2296) Lar_restr_allev PF14354.1 gi|57642175|ref|YP_184653.1| - 0.0097 16.1 0.6 0.021 15.1 0.4 1.5 1 0 0 1 1 1 1 Restriction alleviation protein Lar DZR PF12773.2 gi|57642175|ref|YP_184653.1| - 0.012 15.4 0.2 0.02 14.7 0.1 1.3 1 0 0 1 1 1 0 Double zinc ribbon UPF0547 PF10571.4 gi|57642175|ref|YP_184653.1| - 0.019 14.6 1.7 0.038 13.6 1.2 1.5 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 HypA PF01155.14 gi|57642175|ref|YP_184653.1| - 0.023 14.3 0.1 0.051 13.2 0.0 1.6 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-ribbon_3 PF13248.1 gi|57642175|ref|YP_184653.1| - 0.025 13.7 2.0 1.2 8.4 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-LITAF-like PF10601.4 gi|57642175|ref|YP_184653.1| - 0.032 14.0 0.2 7.9 6.4 0.1 2.2 2 0 0 2 2 2 0 LITAF-like zinc ribbon domain Cys_rich_CPXG PF14255.1 gi|57642175|ref|YP_184653.1| - 0.077 12.8 3.0 0.96 9.3 0.1 2.4 2 0 0 2 2 2 0 Cysteine-rich CPXCG zf-H2C2_2 PF13465.1 gi|57642175|ref|YP_184653.1| - 0.11 12.8 1.0 9.6 6.7 0.1 2.5 2 0 0 2 2 2 0 Zinc-finger double domain zf-CHY PF05495.7 gi|57642175|ref|YP_184653.1| - 0.18 11.9 0.6 0.79 9.9 0.1 2.0 2 0 0 2 2 2 0 CHY zinc finger zinc_ribbon_5 PF13719.1 gi|57642175|ref|YP_184653.1| - 0.21 11.1 1.1 0.65 9.6 0.7 1.8 1 1 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|57642175|ref|YP_184653.1| - 0.36 10.3 8.6 0.98 8.9 1.0 2.5 2 0 0 2 2 2 0 zinc-ribbon domain zf-Di19 PF05605.7 gi|57642175|ref|YP_184653.1| - 0.37 10.9 1.5 9.7 6.4 0.0 2.4 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding zf-Mss51 PF13824.1 gi|57642175|ref|YP_184653.1| - 0.49 10.2 5.0 0.12 12.2 0.9 1.9 2 0 0 2 2 1 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-ISL3 PF14690.1 gi|57642175|ref|YP_184653.1| - 0.89 9.6 5.4 1.6 8.8 0.1 2.8 3 0 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Zn_Tnp_IS1595 PF12760.2 gi|57642175|ref|YP_184653.1| - 0.93 9.3 5.9 3.2 7.6 0.6 2.0 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Methyltransf_11 PF08241.7 gi|57642176|ref|YP_184654.1| - 1.5e-23 83.0 0.0 2.6e-23 82.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|57642176|ref|YP_184654.1| - 5.2e-23 81.3 0.0 6e-23 81.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|57642176|ref|YP_184654.1| - 4.3e-20 71.9 0.0 6.7e-20 71.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|57642176|ref|YP_184654.1| - 4.1e-18 66.0 0.0 6.5e-18 65.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|57642176|ref|YP_184654.1| - 4.4e-17 62.2 0.0 5.4e-17 61.9 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|57642176|ref|YP_184654.1| - 1.5e-16 60.2 0.0 3e-16 59.2 0.0 1.4 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.7 gi|57642176|ref|YP_184654.1| - 1.2e-14 54.5 0.0 1.9e-14 53.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|57642176|ref|YP_184654.1| - 4.5e-11 42.8 0.0 8.5e-11 41.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|57642176|ref|YP_184654.1| - 6e-08 32.2 0.0 8.7e-08 31.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain TehB PF03848.9 gi|57642176|ref|YP_184654.1| - 8.6e-07 28.3 0.0 1.2e-06 27.7 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB CMAS PF02353.15 gi|57642176|ref|YP_184654.1| - 4e-05 22.8 0.0 4.6e-05 22.6 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_29 PF03141.11 gi|57642176|ref|YP_184654.1| - 4.2e-05 22.0 0.0 7.5e-05 21.2 0.0 1.3 1 1 0 1 1 1 1 Putative S-adenosyl-L-methionine-dependent methyltransferase MetW PF07021.7 gi|57642176|ref|YP_184654.1| - 6.7e-05 22.3 0.0 8.2e-05 22.0 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_8 PF05148.10 gi|57642176|ref|YP_184654.1| - 0.00036 20.2 0.0 0.0026 17.4 0.0 2.1 1 1 1 2 2 2 1 Hypothetical methyltransferase CheR PF01739.13 gi|57642176|ref|YP_184654.1| - 0.0026 17.0 0.0 0.026 13.8 0.0 2.3 1 1 1 2 2 2 1 CheR methyltransferase, SAM binding domain Methyltransf_32 PF13679.1 gi|57642176|ref|YP_184654.1| - 0.007 16.0 0.0 0.0098 15.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.5 gi|57642176|ref|YP_184654.1| - 0.026 14.0 0.0 0.032 13.7 0.0 1.3 1 1 0 1 1 1 0 RNA cap guanine-N2 methyltransferase FtsJ PF01728.14 gi|57642176|ref|YP_184654.1| - 0.053 13.5 0.0 0.57 10.1 0.0 2.1 1 1 0 1 1 1 0 FtsJ-like methyltransferase Methyltransf_PK PF05891.7 gi|57642176|ref|YP_184654.1| - 0.054 12.7 0.0 0.077 12.2 0.0 1.2 1 0 0 1 1 1 0 AdoMet dependent proline di-methyltransferase UPF0020 PF01170.13 gi|57642176|ref|YP_184654.1| - 0.078 12.5 0.0 0.14 11.7 0.0 1.4 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 FmrO PF07091.6 gi|57642176|ref|YP_184654.1| - 0.12 11.2 0.0 0.17 10.8 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA methyltransferase (FmrO) GHMP_kinases_C PF08544.8 gi|57642177|ref|YP_184655.1| - 0.00021 21.4 0.0 0.00051 20.1 0.0 1.7 1 0 0 1 1 1 1 GHMP kinases C terminal DUF1464 PF07318.7 gi|57642178|ref|YP_184656.1| - 1e-130 435.5 0.5 1.1e-130 435.4 0.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1464) POR PF01558.13 gi|57642179|ref|YP_184657.1| - 2.9e-33 115.2 0.0 3.4e-33 114.9 0.0 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase PhoU PF01895.14 gi|57642180|ref|YP_184658.1| - 1.4e-15 57.5 8.6 2.1e-13 50.5 0.4 2.5 2 0 0 2 2 2 2 PhoU domain Antitoxin-MazE PF04014.13 gi|57642180|ref|YP_184658.1| - 1.2e-09 37.6 1.0 3.2e-09 36.3 0.1 2.4 2 0 0 2 2 2 1 Antidote-toxin recognition MazE TelA PF05816.6 gi|57642180|ref|YP_184658.1| - 0.034 12.8 0.1 0.064 11.9 0.1 1.4 1 0 0 1 1 1 0 Toxic anion resistance protein (TelA) CK2S PF15011.1 gi|57642180|ref|YP_184658.1| - 0.073 12.8 0.6 3.6 7.3 0.1 2.2 2 0 0 2 2 2 0 Casein Kinase 2 substrate Asparaginase_2 PF01112.13 gi|57642181|ref|YP_184659.1| - 5.6e-79 265.1 3.2 6.8e-79 264.8 2.2 1.0 1 0 0 1 1 1 1 Asparaginase MFS_1 PF07690.11 gi|57642182|ref|YP_184660.1| - 2e-42 145.2 55.7 9.1e-39 133.1 32.3 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily PUCC PF03209.10 gi|57642182|ref|YP_184660.1| - 1.6e-07 30.3 8.2 3.5e-07 29.2 5.7 1.6 1 0 0 1 1 1 1 PUCC protein Sugar_tr PF00083.19 gi|57642182|ref|YP_184660.1| - 5.1e-07 28.6 34.1 4.5e-06 25.5 10.5 2.7 1 1 0 2 2 2 2 Sugar (and other) transporter MFS_1_like PF12832.2 gi|57642182|ref|YP_184660.1| - 8.3e-06 25.5 11.4 0.0011 18.6 1.0 2.7 2 0 0 2 2 2 2 MFS_1 like family MFS_3 PF05977.8 gi|57642182|ref|YP_184660.1| - 1.1e-05 23.8 14.6 1.5e-05 23.3 10.1 1.2 1 0 0 1 1 1 1 Transmembrane secretion effector Radical_SAM PF04055.16 gi|57642183|ref|YP_184661.1| - 4.3e-15 56.2 0.1 2.3e-14 53.9 0.0 1.9 2 0 0 2 2 2 1 Radical SAM superfamily TPR_2 PF07719.12 gi|57642184|ref|YP_184662.1| - 1e-05 25.0 5.3 0.00026 20.6 0.2 3.0 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_21 PF09976.4 gi|57642184|ref|YP_184662.1| - 0.00041 20.3 0.0 0.00074 19.4 0.0 1.4 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_16 PF13432.1 gi|57642184|ref|YP_184662.1| - 0.00058 20.4 0.3 0.0013 19.3 0.2 1.6 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_14 PF13428.1 gi|57642184|ref|YP_184662.1| - 0.0052 17.3 1.1 0.13 12.9 0.1 2.8 1 1 0 2 2 2 1 Tetratricopeptide repeat TPR_1 PF00515.23 gi|57642184|ref|YP_184662.1| - 0.0071 15.9 0.4 0.0071 15.9 0.3 2.8 3 1 0 3 3 3 1 Tetratricopeptide repeat TPR_7 PF13176.1 gi|57642184|ref|YP_184662.1| - 0.0078 15.9 0.6 0.059 13.2 0.1 2.5 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_8 PF13181.1 gi|57642184|ref|YP_184662.1| - 0.016 14.9 2.4 0.051 13.3 0.0 2.9 3 1 1 4 4 4 0 Tetratricopeptide repeat TPR_11 PF13414.1 gi|57642184|ref|YP_184662.1| - 0.048 13.3 4.6 0.053 13.1 1.3 2.2 2 1 1 3 3 3 0 TPR repeat TPR_19 PF14559.1 gi|57642184|ref|YP_184662.1| - 0.065 13.5 0.2 0.18 12.1 0.1 1.8 1 1 0 1 1 1 0 Tetratricopeptide repeat Cytochrom_B562 PF07361.6 gi|57642184|ref|YP_184662.1| - 0.093 13.1 1.4 0.23 11.8 0.1 2.2 2 1 0 2 2 2 0 Cytochrome b562 MAS20 PF02064.10 gi|57642184|ref|YP_184662.1| - 0.12 12.2 0.1 0.24 11.3 0.1 1.4 1 0 0 1 1 1 0 MAS20 protein import receptor DUF603 PF04645.7 gi|57642184|ref|YP_184662.1| - 0.22 11.4 2.6 0.16 11.8 0.4 1.7 2 0 0 2 2 2 0 Protein of unknown function, DUF603 TPR_6 PF13174.1 gi|57642184|ref|YP_184662.1| - 0.24 11.9 1.6 11 6.7 0.0 3.1 3 1 0 3 3 2 0 Tetratricopeptide repeat RIO1 PF01163.17 gi|57642185|ref|YP_184663.1| - 3.4e-49 166.7 0.0 4.2e-49 166.4 0.0 1.1 1 0 0 1 1 1 1 RIO1 family Rio2_N PF09202.6 gi|57642185|ref|YP_184663.1| - 2.6e-23 81.8 0.0 5.8e-23 80.7 0.0 1.6 1 0 0 1 1 1 1 Rio2, N-terminal APH PF01636.18 gi|57642185|ref|YP_184663.1| - 6.9e-08 32.5 4.2 0.00032 20.4 0.1 3.0 2 1 1 3 3 3 2 Phosphotransferase enzyme family Pkinase PF00069.20 gi|57642185|ref|YP_184663.1| - 1.4e-06 27.6 0.1 2.6e-06 26.7 0.0 1.4 1 1 0 1 1 1 1 Protein kinase domain MarR_2 PF12802.2 gi|57642185|ref|YP_184663.1| - 0.031 13.9 0.1 0.13 11.9 0.0 2.1 2 0 0 2 2 2 0 MarR family MFS_1 PF07690.11 gi|57642186|ref|YP_184664.1| - 1.3e-55 188.5 81.1 5.8e-45 153.5 30.5 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|57642186|ref|YP_184664.1| - 4.4e-16 58.5 23.6 6.8e-11 41.3 5.1 3.3 2 1 1 3 3 3 3 Sugar (and other) transporter MFS_2 PF13347.1 gi|57642186|ref|YP_184664.1| - 0.0029 16.0 1.8 0.0029 16.0 1.2 2.9 1 1 1 2 2 2 2 MFS/sugar transport protein Folate_carrier PF01770.13 gi|57642186|ref|YP_184664.1| - 8.2 4.8 12.7 0.06 11.8 1.5 2.4 3 1 0 3 3 3 0 Reduced folate carrier AAA PF00004.24 gi|57642187|ref|YP_184665.1| - 1.3e-44 151.5 0.0 2.4e-44 150.7 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_2 PF07724.9 gi|57642187|ref|YP_184665.1| - 6.3e-08 32.7 0.0 1.4e-06 28.3 0.0 2.3 2 0 0 2 2 2 1 AAA domain (Cdc48 subfamily) AAA_16 PF13191.1 gi|57642187|ref|YP_184665.1| - 2.9e-07 30.6 0.1 0.00019 21.5 0.0 3.0 2 1 1 3 3 2 1 AAA ATPase domain AAA_5 PF07728.9 gi|57642187|ref|YP_184665.1| - 7.4e-07 28.9 0.1 8.2e-06 25.5 0.1 2.5 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) RuvB_N PF05496.7 gi|57642187|ref|YP_184665.1| - 1.9e-06 27.0 0.0 4.1e-06 26.0 0.0 1.5 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_22 PF13401.1 gi|57642187|ref|YP_184665.1| - 2.9e-05 24.1 0.1 0.0014 18.8 0.1 2.6 1 1 0 1 1 1 1 AAA domain DUF815 PF05673.8 gi|57642187|ref|YP_184665.1| - 4.4e-05 22.5 0.0 0.00012 21.1 0.0 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF815) AAA_14 PF13173.1 gi|57642187|ref|YP_184665.1| - 0.00015 21.6 0.0 0.00028 20.7 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|57642187|ref|YP_184665.1| - 0.00024 21.8 0.2 0.0014 19.4 0.0 2.2 2 1 0 2 2 2 1 AAA domain AAA_28 PF13521.1 gi|57642187|ref|YP_184665.1| - 0.00025 21.0 0.2 0.0013 18.6 0.0 2.2 2 1 0 2 2 2 1 AAA domain KaiC PF06745.8 gi|57642187|ref|YP_184665.1| - 0.00074 18.6 0.4 0.13 11.3 0.0 3.0 2 1 0 3 3 3 1 KaiC Zeta_toxin PF06414.7 gi|57642187|ref|YP_184665.1| - 0.0013 17.8 0.0 0.0026 16.8 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin RNA_helicase PF00910.17 gi|57642187|ref|YP_184665.1| - 0.0019 18.3 0.0 0.005 16.9 0.0 1.8 2 0 0 2 2 1 1 RNA helicase MAD PF05557.8 gi|57642187|ref|YP_184665.1| - 0.0019 16.3 0.4 0.0035 15.5 0.3 1.3 1 0 0 1 1 1 1 Mitotic checkpoint protein AAA_19 PF13245.1 gi|57642187|ref|YP_184665.1| - 0.0032 17.1 0.1 0.0097 15.6 0.1 1.8 1 0 0 1 1 1 1 Part of AAA domain Arch_ATPase PF01637.13 gi|57642187|ref|YP_184665.1| - 0.0043 16.7 0.1 0.037 13.7 0.0 2.4 1 1 0 1 1 1 1 Archaeal ATPase AAA_3 PF07726.6 gi|57642187|ref|YP_184665.1| - 0.0052 16.3 0.0 0.01 15.4 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) TIP49 PF06068.8 gi|57642187|ref|YP_184665.1| - 0.0068 15.1 0.0 0.012 14.3 0.0 1.5 1 0 0 1 1 1 1 TIP49 C-terminus Mg_chelatase PF01078.16 gi|57642187|ref|YP_184665.1| - 0.0076 15.4 0.0 0.015 14.4 0.0 1.4 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI IstB_IS21 PF01695.12 gi|57642187|ref|YP_184665.1| - 0.0085 15.5 0.0 0.02 14.2 0.0 1.7 1 0 0 1 1 1 1 IstB-like ATP binding protein CENP-F_leu_zip PF10473.4 gi|57642187|ref|YP_184665.1| - 0.011 15.5 0.6 0.029 14.2 0.1 1.8 2 0 0 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 AAA_25 PF13481.1 gi|57642187|ref|YP_184665.1| - 0.012 15.0 2.6 0.31 10.3 0.0 3.1 2 1 1 3 3 3 0 AAA domain Prefoldin_2 PF01920.15 gi|57642187|ref|YP_184665.1| - 0.016 14.9 0.9 0.07 12.9 0.1 2.2 2 0 0 2 2 2 0 Prefoldin subunit NTPase_1 PF03266.10 gi|57642187|ref|YP_184665.1| - 0.019 14.7 0.5 0.57 9.8 0.0 2.8 2 1 1 3 3 3 0 NTPase NB-ARC PF00931.17 gi|57642187|ref|YP_184665.1| - 0.027 13.3 0.0 0.044 12.6 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_18 PF13238.1 gi|57642187|ref|YP_184665.1| - 0.029 14.6 0.0 0.066 13.5 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|57642187|ref|YP_184665.1| - 0.03 14.2 0.0 0.086 12.7 0.0 1.8 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|57642187|ref|YP_184665.1| - 0.03 13.8 0.0 0.099 12.2 0.0 1.9 1 1 0 1 1 1 0 AAA domain AAA_24 PF13479.1 gi|57642187|ref|YP_184665.1| - 0.042 13.4 0.0 0.086 12.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain Striatin PF08232.7 gi|57642187|ref|YP_184665.1| - 0.05 13.9 0.7 0.11 12.8 0.5 1.5 1 0 0 1 1 1 0 Striatin family Bac_DnaA PF00308.13 gi|57642187|ref|YP_184665.1| - 0.052 13.1 0.0 1.3 8.5 0.0 2.7 2 1 0 3 3 3 0 Bacterial dnaA protein DUF904 PF06005.7 gi|57642187|ref|YP_184665.1| - 0.056 13.7 1.6 0.18 12.1 0.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF904) Sigma54_activat PF00158.21 gi|57642187|ref|YP_184665.1| - 0.065 12.6 0.0 0.59 9.5 0.0 2.4 3 0 0 3 3 3 0 Sigma-54 interaction domain Lebercilin PF15619.1 gi|57642187|ref|YP_184665.1| - 0.087 12.2 2.2 0.3 10.4 1.2 2.0 2 0 0 2 2 2 0 Ciliary protein causing Leber congenital amaurosis disease NACHT PF05729.7 gi|57642187|ref|YP_184665.1| - 0.11 12.1 0.0 0.6 9.7 0.0 2.0 2 0 0 2 2 2 0 NACHT domain Parvo_NS1 PF01057.12 gi|57642187|ref|YP_184665.1| - 0.12 11.1 0.0 0.21 10.4 0.0 1.3 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 Sigma54_activ_2 PF14532.1 gi|57642187|ref|YP_184665.1| - 0.15 12.1 0.0 0.41 10.6 0.0 1.7 1 0 0 1 1 1 0 Sigma-54 interaction domain Prefoldin PF02996.12 gi|57642187|ref|YP_184665.1| - 0.23 11.1 2.1 0.34 10.5 0.3 1.9 2 0 0 2 2 2 0 Prefoldin subunit FlaC_arch PF05377.6 gi|57642187|ref|YP_184665.1| - 0.43 10.5 3.4 11 5.9 0.0 2.8 3 0 0 3 3 2 0 Flagella accessory protein C (FlaC) CASP_C PF08172.7 gi|57642187|ref|YP_184665.1| - 1.3 8.0 3.5 2.1 7.3 2.4 1.2 1 0 0 1 1 1 0 CASP C terminal DUF4164 PF13747.1 gi|57642187|ref|YP_184665.1| - 3.8 7.7 7.6 0.26 11.4 0.6 2.5 4 0 0 4 4 1 0 Domain of unknown function (DUF4164) HALZ PF02183.13 gi|57642187|ref|YP_184665.1| - 6.8 6.4 7.4 0.93 9.2 1.3 2.3 2 0 0 2 2 2 0 Homeobox associated leucine zipper Cas_Cas6 PF01881.11 gi|57642188|ref|YP_184666.1| - 1.1e-41 142.6 0.1 1.5e-41 142.2 0.1 1.2 1 0 0 1 1 1 1 CRISPR associated protein Cas6 Arylesterase PF01731.15 gi|57642188|ref|YP_184666.1| - 0.023 14.6 0.1 0.044 13.7 0.1 1.4 1 0 0 1 1 1 0 Arylesterase Glycos_transf_4 PF00953.16 gi|57642189|ref|YP_184667.1| - 1.8e-33 115.5 10.9 3.2e-33 114.7 7.6 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 4 Glycos_transf_2 PF00535.21 gi|57642190|ref|YP_184668.1| - 3.5e-26 91.9 0.0 5.8e-26 91.1 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 HAD_2 PF13419.1 gi|57642190|ref|YP_184668.1| - 6.4e-21 75.3 0.0 2e-20 73.7 0.0 1.8 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|57642190|ref|YP_184668.1| - 4.6e-13 50.0 1.0 8.9e-11 42.6 0.7 2.3 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|57642190|ref|YP_184668.1| - 5e-09 35.7 0.0 1.5e-08 34.2 0.0 1.8 1 0 0 1 1 1 1 HAD-hyrolase-like Glyco_tranf_2_3 PF13641.1 gi|57642190|ref|YP_184668.1| - 9.2e-08 32.1 0.0 2.7e-07 30.6 0.0 1.7 2 0 0 2 2 2 1 Glycosyltransferase like family 2 HAD PF12710.2 gi|57642190|ref|YP_184668.1| - 4.2e-07 30.3 0.0 1e-06 29.0 0.0 1.7 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.1 gi|57642190|ref|YP_184668.1| - 0.00023 20.9 0.0 1.3 8.9 0.0 3.0 3 0 0 3 3 3 2 Haloacid dehalogenase-like hydrolase Acid_PPase PF12689.2 gi|57642190|ref|YP_184668.1| - 0.0054 16.3 0.0 1.7 8.2 0.0 2.6 3 0 0 3 3 3 1 Acid Phosphatase PA PF02225.17 gi|57642190|ref|YP_184668.1| - 0.01 15.5 0.4 1.1 9.0 0.0 2.8 3 0 0 3 3 3 1 PA domain DUF705 PF05152.7 gi|57642190|ref|YP_184668.1| - 0.022 13.7 0.0 4.7 6.1 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF705) Hydrolase_3 PF08282.7 gi|57642190|ref|YP_184668.1| - 0.022 14.3 0.0 1.1 8.7 0.0 2.6 3 0 0 3 3 3 0 haloacid dehalogenase-like hydrolase Glyco_tranf_2_4 PF13704.1 gi|57642190|ref|YP_184668.1| - 0.056 13.7 0.0 0.11 12.8 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferase family 2 NIF PF03031.13 gi|57642190|ref|YP_184668.1| - 0.068 12.8 0.0 2.2 7.9 0.0 2.3 1 1 0 1 1 1 0 NLI interacting factor-like phosphatase S6PP PF05116.8 gi|57642190|ref|YP_184668.1| - 0.081 12.2 0.0 2 7.6 0.0 2.4 2 0 0 2 2 2 0 Sucrose-6F-phosphate phosphohydrolase DUF2304 PF10066.4 gi|57642191|ref|YP_184669.1| - 2.1e-37 127.4 6.2 2.4e-37 127.2 4.3 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2304) SelB-wing_3 PF09107.6 gi|57642191|ref|YP_184669.1| - 0.0018 17.6 0.1 0.11 11.8 0.1 2.2 2 0 0 2 2 2 1 Elongation factor SelB, winged helix TauE PF01925.14 gi|57642191|ref|YP_184669.1| - 0.0066 15.9 1.7 0.0073 15.7 1.1 1.1 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE DUF2976 PF11190.3 gi|57642191|ref|YP_184669.1| - 0.0083 15.6 2.5 0.0083 15.6 1.7 2.1 1 1 0 2 2 2 1 Protein of unknown function (DUF2976) DUF999 PF06198.6 gi|57642191|ref|YP_184669.1| - 0.019 14.7 0.5 0.029 14.1 0.3 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF999) Matrilin_ccoil PF10393.4 gi|57642191|ref|YP_184669.1| - 0.039 13.3 2.7 0.042 13.2 0.9 1.7 2 0 0 2 2 2 0 Trimeric coiled-coil oligomerisation domain of matrilin Lectin_N PF03954.9 gi|57642191|ref|YP_184669.1| - 0.062 12.6 0.7 0.1 11.9 0.5 1.6 1 1 0 1 1 1 0 Hepatic lectin, N-terminal domain CitMHS PF03600.11 gi|57642191|ref|YP_184669.1| - 0.083 11.4 1.5 0.088 11.3 1.0 1.1 1 0 0 1 1 1 0 Citrate transporter Polysacc_synt_C PF14667.1 gi|57642191|ref|YP_184669.1| - 0.096 12.4 9.4 0.11 12.3 6.5 1.1 1 0 0 1 1 1 0 Polysaccharide biosynthesis C-terminal domain UPF0104 PF03706.8 gi|57642191|ref|YP_184669.1| - 0.11 11.7 7.5 0.28 10.4 5.2 1.7 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0104) DUF2069 PF09842.4 gi|57642191|ref|YP_184669.1| - 0.12 12.3 5.7 0.13 12.2 2.5 1.8 2 0 0 2 2 2 0 Predicted membrane protein (DUF2069) DUF3593 PF12159.3 gi|57642191|ref|YP_184669.1| - 0.67 9.7 3.6 1.3 8.8 1.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3593) DUF948 PF06103.6 gi|57642191|ref|YP_184669.1| - 1.3 8.9 6.9 3.2 7.6 0.1 2.9 3 0 0 3 3 3 0 Bacterial protein of unknown function (DUF948) Wzy_C PF04932.10 gi|57642191|ref|YP_184669.1| - 4.8 6.9 7.1 15 5.3 4.9 1.8 1 1 0 1 1 1 0 O-Antigen ligase DUF4199 PF13858.1 gi|57642191|ref|YP_184669.1| - 6.3 6.6 7.7 8.5 6.2 5.4 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF4199) DUF2681 PF10883.3 gi|57642191|ref|YP_184669.1| - 8.6 6.6 7.1 2.1 8.5 0.0 2.7 2 1 1 3 3 3 0 Protein of unknown function (DUF2681) dCMP_cyt_deam_1 PF00383.17 gi|57642192|ref|YP_184670.1| - 1.2e-28 98.7 0.2 1.6e-28 98.3 0.1 1.2 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region MafB19-deam PF14437.1 gi|57642192|ref|YP_184670.1| - 0.0017 18.0 0.2 0.0031 17.1 0.1 1.4 1 0 0 1 1 1 1 MafB19-like deaminase Bd3614-deam PF14439.1 gi|57642192|ref|YP_184670.1| - 0.013 15.3 0.0 0.025 14.4 0.0 1.4 1 1 0 1 1 1 0 Bd3614-like deaminase XOO_2897-deam PF14440.1 gi|57642192|ref|YP_184670.1| - 0.062 13.0 0.0 0.075 12.7 0.0 1.2 1 0 0 1 1 1 0 Xanthomonas XOO_2897-like deaminase Peptidase_M48 PF01435.13 gi|57642193|ref|YP_184671.1| - 1.4e-24 86.8 0.0 1.8e-24 86.5 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.6 gi|57642193|ref|YP_184671.1| - 0.013 14.4 0.0 0.028 13.3 0.0 1.7 1 1 0 1 1 1 0 BlaR1 peptidase M56 Penicillinase_R PF03965.11 gi|57642194|ref|YP_184672.1| - 9.3e-18 64.3 0.2 1.1e-17 64.1 0.2 1.1 1 0 0 1 1 1 1 Penicillinase repressor HxlR PF01638.12 gi|57642194|ref|YP_184672.1| - 0.00034 20.1 0.5 0.0011 18.5 0.2 1.8 1 1 1 2 2 2 1 HxlR-like helix-turn-helix Cdc6_C PF09079.6 gi|57642194|ref|YP_184672.1| - 0.0019 17.8 0.5 0.0033 17.1 0.3 1.4 1 0 0 1 1 1 1 CDC6, C terminal PadR PF03551.9 gi|57642194|ref|YP_184672.1| - 0.0049 16.6 0.2 0.14 11.9 0.0 2.5 2 1 1 3 3 3 1 Transcriptional regulator PadR-like family TrmB PF01978.14 gi|57642194|ref|YP_184672.1| - 0.0071 16.0 0.2 0.022 14.4 0.1 1.9 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB FUR PF01475.14 gi|57642194|ref|YP_184672.1| - 0.0071 16.2 0.0 0.011 15.6 0.0 1.3 1 1 0 1 1 1 1 Ferric uptake regulator family TFIIE_alpha PF02002.12 gi|57642194|ref|YP_184672.1| - 0.0075 15.7 0.3 0.015 14.7 0.2 1.5 1 1 0 1 1 1 1 TFIIE alpha subunit HTH_20 PF12840.2 gi|57642194|ref|YP_184672.1| - 0.011 15.5 0.0 0.028 14.2 0.0 1.6 2 0 0 2 2 2 0 Helix-turn-helix domain GPP34 PF05719.6 gi|57642194|ref|YP_184672.1| - 0.012 15.6 0.0 0.014 15.4 0.0 1.1 1 0 0 1 1 1 0 Golgi phosphoprotein 3 (GPP34) FliL PF03748.9 gi|57642194|ref|YP_184672.1| - 0.02 14.8 0.1 5.5 7.0 0.0 2.3 2 1 0 2 2 2 0 Flagellar basal body-associated protein FliL MarR_2 PF12802.2 gi|57642194|ref|YP_184672.1| - 0.025 14.2 0.1 0.04 13.5 0.1 1.5 1 1 0 1 1 1 0 MarR family PPR_2 PF13041.1 gi|57642194|ref|YP_184672.1| - 0.048 13.6 0.0 0.1 12.5 0.0 1.6 1 0 0 1 1 1 0 PPR repeat family HTH_24 PF13412.1 gi|57642194|ref|YP_184672.1| - 0.054 12.8 0.1 0.75 9.2 0.0 2.4 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding Sulfolobus_pRN PF05584.6 gi|57642194|ref|YP_184672.1| - 0.098 12.6 1.6 0.12 12.3 0.5 1.6 2 0 0 2 2 2 0 Sulfolobus plasmid regulatory protein DUF3770 PF12603.3 gi|57642194|ref|YP_184672.1| - 0.12 11.4 0.3 0.28 10.2 0.2 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF3770) DUF387 PF04079.11 gi|57642194|ref|YP_184672.1| - 0.13 11.6 0.4 0.43 9.9 0.2 1.9 1 1 1 2 2 2 0 Putative transcriptional regulators (Ypuh-like) DHO_dh PF01180.16 gi|57642195|ref|YP_184673.1| - 4e-66 222.9 0.0 4.6e-66 222.7 0.0 1.0 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase Dus PF01207.12 gi|57642195|ref|YP_184673.1| - 7.6e-12 44.6 0.0 2.2e-11 43.1 0.0 1.5 1 1 0 1 1 1 1 Dihydrouridine synthase (Dus) NMO PF03060.10 gi|57642195|ref|YP_184673.1| - 2.9e-05 23.4 2.5 0.0004 19.6 0.5 2.2 2 0 0 2 2 2 1 Nitronate monooxygenase DUF561 PF04481.7 gi|57642195|ref|YP_184673.1| - 0.0021 17.0 0.1 0.0061 15.5 0.1 1.8 2 1 0 2 2 2 1 Protein of unknown function (DUF561) IMPDH PF00478.20 gi|57642195|ref|YP_184673.1| - 0.0039 16.1 0.1 0.0068 15.3 0.1 1.3 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain His_biosynth PF00977.16 gi|57642195|ref|YP_184673.1| - 0.0045 16.2 0.1 0.012 14.8 0.0 1.7 2 0 0 2 2 2 1 Histidine biosynthesis protein Antitoxin-MazE PF04014.13 gi|57642196|ref|YP_184674.1| - 7.1e-14 51.1 0.3 1e-13 50.6 0.2 1.3 1 0 0 1 1 1 1 Antidote-toxin recognition MazE DUF1905 PF08922.6 gi|57642196|ref|YP_184674.1| - 0.028 13.9 0.0 0.045 13.3 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1905) MTBP_C PF14920.1 gi|57642196|ref|YP_184674.1| - 0.12 11.8 0.0 0.13 11.7 0.0 1.0 1 0 0 1 1 1 0 MDM2-binding PIN PF01850.16 gi|57642197|ref|YP_184675.1| - 9.6e-13 48.5 1.0 1.1e-12 48.3 0.7 1.0 1 0 0 1 1 1 1 PIN domain PIN_3 PF13470.1 gi|57642197|ref|YP_184675.1| - 0.022 15.4 0.2 0.029 15.0 0.1 1.3 1 0 0 1 1 1 0 PIN domain PIN_4 PF13638.1 gi|57642197|ref|YP_184675.1| - 0.053 13.6 0.7 0.19 11.8 0.5 1.9 1 1 0 1 1 1 0 PIN domain QueC PF06508.8 gi|57642198|ref|YP_184676.1| - 4.5e-66 222.1 0.0 5.5e-66 221.8 0.0 1.0 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC ATP_bind_3 PF01171.15 gi|57642198|ref|YP_184676.1| - 1.9e-06 27.4 0.0 0.0003 20.3 0.0 2.1 2 0 0 2 2 2 2 PP-loop family ThiI PF02568.9 gi|57642198|ref|YP_184676.1| - 8.4e-06 25.3 0.0 0.16 11.3 0.0 2.6 2 1 1 3 3 3 2 Thiamine biosynthesis protein (ThiI) ATP_bind_4 PF01902.12 gi|57642198|ref|YP_184676.1| - 2.8e-05 23.5 0.0 6.7e-05 22.3 0.0 1.6 1 0 0 1 1 1 1 ATP-binding region Arginosuc_synth PF00764.14 gi|57642198|ref|YP_184676.1| - 2.9e-05 23.3 0.0 5.2e-05 22.4 0.0 1.4 2 0 0 2 2 2 1 Arginosuccinate synthase Asn_synthase PF00733.16 gi|57642198|ref|YP_184676.1| - 5e-05 22.9 0.0 7.1e-05 22.4 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase PAPS_reduct PF01507.14 gi|57642198|ref|YP_184676.1| - 0.0022 17.8 0.0 0.087 12.6 0.0 2.1 2 0 0 2 2 2 1 Phosphoadenosine phosphosulfate reductase family NAD_synthase PF02540.12 gi|57642198|ref|YP_184676.1| - 0.018 13.9 0.0 0.59 8.9 0.0 2.1 2 0 0 2 2 2 0 NAD synthase tRNA_Me_trans PF03054.11 gi|57642198|ref|YP_184676.1| - 0.023 13.2 0.0 0.034 12.7 0.0 1.2 1 0 0 1 1 1 0 tRNA methyl transferase DUF553 PF04473.7 gi|57642199|ref|YP_184677.1| - 1.4e-51 173.7 3.7 2.1e-51 173.2 2.6 1.3 1 0 0 1 1 1 1 Transglutaminase-like domain Transglut_core PF01841.14 gi|57642199|ref|YP_184677.1| - 0.0017 18.5 0.1 0.048 13.8 0.1 2.4 1 1 0 1 1 1 1 Transglutaminase-like superfamily Peptidase_C93 PF06035.6 gi|57642199|ref|YP_184677.1| - 0.0043 16.4 0.0 0.011 15.1 0.0 1.6 1 1 0 1 1 1 1 Bacterial transglutaminase-like cysteine proteinase BTLCP TM231 PF10149.4 gi|57642199|ref|YP_184677.1| - 0.13 11.2 0.8 0.93 8.4 0.0 2.5 2 0 0 2 2 2 0 Transmembrane protein 231 DUF3488 PF11992.3 gi|57642200|ref|YP_184678.1| - 0.1 11.1 4.6 0.11 11.1 3.2 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF3488) Epiglycanin_C PF14654.1 gi|57642200|ref|YP_184678.1| - 1.4 8.9 3.6 1.4 8.9 1.8 1.4 1 1 0 1 1 1 0 Mucin, catalytic, TM and cytoplasmic tail region MFS_1 PF07690.11 gi|57642201|ref|YP_184679.1| - 1.4e-20 73.2 42.5 2.1e-20 72.7 29.4 1.1 1 0 0 1 1 1 1 Major Facilitator Superfamily UPF0016 PF01169.14 gi|57642202|ref|YP_184680.1| - 1.6e-22 79.4 6.1 1.8e-22 79.2 4.3 1.1 1 0 0 1 1 1 1 Uncharacterized protein family UPF0016 TauE PF01925.14 gi|57642202|ref|YP_184680.1| - 0.0057 16.1 4.5 0.0065 15.9 3.1 1.2 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE DUF456 PF04306.8 gi|57642202|ref|YP_184680.1| - 0.38 10.7 8.6 1 9.4 6.0 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF456) DUF4064 PF13273.1 gi|57642202|ref|YP_184680.1| - 2 8.5 7.3 3.2 7.8 5.1 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF4064) Aminotran_1_2 PF00155.16 gi|57642203|ref|YP_184681.1| - 4.1e-73 246.4 0.0 4.7e-73 246.2 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.14 gi|57642203|ref|YP_184681.1| - 1.2e-06 27.5 0.0 4.7e-06 25.5 0.0 1.8 2 0 0 2 2 2 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|57642203|ref|YP_184681.1| - 1.7e-06 27.4 0.0 2.6e-06 26.7 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.12 gi|57642203|ref|YP_184681.1| - 9.6e-06 24.8 0.0 1.5e-05 24.2 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Alliinase_C PF04864.8 gi|57642203|ref|YP_184681.1| - 0.0027 16.4 0.3 0.034 12.8 0.2 2.3 1 1 1 2 2 2 1 Allinase Cys_Met_Meta_PP PF01053.15 gi|57642203|ref|YP_184681.1| - 0.0031 15.8 0.0 0.0062 14.8 0.0 1.4 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Radical_SAM PF04055.16 gi|57642203|ref|YP_184681.1| - 0.041 14.0 0.3 0.27 11.3 0.0 2.4 2 1 0 2 2 2 0 Radical SAM superfamily SnoaL_2 PF12680.2 gi|57642203|ref|YP_184681.1| - 0.11 12.9 0.0 0.27 11.6 0.0 1.7 1 0 0 1 1 1 0 SnoaL-like domain DUF1246 PF06849.7 gi|57642203|ref|YP_184681.1| - 0.12 12.1 0.0 1.1 9.0 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1246) AAA_10 PF12846.2 gi|57642203|ref|YP_184681.1| - 0.13 11.7 0.0 1.6 8.0 0.0 2.1 1 1 1 2 2 2 0 AAA-like domain CGI-121 PF08617.5 gi|57642204|ref|YP_184682.1| - 7.6e-13 48.4 0.0 8.5e-13 48.2 0.0 1.1 1 0 0 1 1 1 1 Kinase binding protein CGI-121 RHH_1 PF01402.16 gi|57642205|ref|YP_184683.1| - 7.3e-07 28.8 0.0 1.1e-06 28.2 0.0 1.3 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_2 PF03693.9 gi|57642205|ref|YP_184683.1| - 0.0013 18.8 0.0 0.0014 18.7 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0156) DUF2191 PF09957.4 gi|57642205|ref|YP_184683.1| - 0.17 11.6 0.7 0.23 11.3 0.2 1.5 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2191) Tubulin PF00091.20 gi|57642206|ref|YP_184684.1| - 4.3e-40 137.8 0.2 1.7e-39 135.8 0.1 1.8 1 1 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain FtsZ_C PF12327.3 gi|57642206|ref|YP_184684.1| - 1.3e-26 92.4 2.3 1.3e-25 89.2 0.5 2.7 2 0 0 2 2 2 1 FtsZ family, C-terminal domain ThiF PF00899.16 gi|57642206|ref|YP_184684.1| - 0.028 14.2 0.1 0.075 12.8 0.1 1.7 1 0 0 1 1 1 0 ThiF family CbiA PF01656.18 gi|57642207|ref|YP_184685.1| - 1.4e-41 142.0 0.1 1.8e-41 141.6 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Fer4_NifH PF00142.13 gi|57642207|ref|YP_184685.1| - 2.3e-12 46.6 0.2 6.5e-06 25.5 0.0 2.2 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family MipZ PF09140.6 gi|57642207|ref|YP_184685.1| - 1.1e-11 44.3 0.1 9.5e-10 37.9 0.1 2.1 1 1 0 1 1 1 1 ATPase MipZ YhjQ PF06564.7 gi|57642207|ref|YP_184685.1| - 1.1e-10 41.3 0.0 1.5e-10 40.8 0.0 1.2 1 0 0 1 1 1 1 YhjQ protein ArsA_ATPase PF02374.10 gi|57642207|ref|YP_184685.1| - 5.7e-09 35.4 0.7 4.6e-08 32.4 0.0 2.7 1 1 1 2 2 2 1 Anion-transporting ATPase AAA_31 PF13614.1 gi|57642207|ref|YP_184685.1| - 1.8e-08 34.4 0.1 3.5e-08 33.5 0.0 1.5 1 1 0 1 1 1 1 AAA domain VirC1 PF07015.6 gi|57642207|ref|YP_184685.1| - 0.00022 20.3 0.7 0.002 17.2 0.0 2.5 2 1 1 3 3 3 1 VirC1 protein ArgK PF03308.11 gi|57642207|ref|YP_184685.1| - 0.0016 17.2 0.1 0.0025 16.6 0.0 1.2 1 0 0 1 1 1 1 ArgK protein Thymidylate_kin PF02223.12 gi|57642207|ref|YP_184685.1| - 0.0034 16.7 0.3 1.9 7.8 0.0 2.6 2 1 1 3 3 3 2 Thymidylate kinase AAA_18 PF13238.1 gi|57642207|ref|YP_184685.1| - 0.051 13.8 0.0 0.13 12.5 0.0 1.7 1 0 0 1 1 1 0 AAA domain FTHFS PF01268.14 gi|57642207|ref|YP_184685.1| - 0.054 11.4 0.1 0.076 10.9 0.1 1.2 1 0 0 1 1 1 0 Formate--tetrahydrofolate ligase MobB PF03205.9 gi|57642207|ref|YP_184685.1| - 0.12 12.0 0.0 0.29 10.8 0.0 1.6 1 1 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B DUF2782 PF11191.3 gi|57642208|ref|YP_184686.1| - 0.013 15.4 0.1 0.016 15.2 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2782) DisA-linker PF10635.4 gi|57642208|ref|YP_184686.1| - 0.079 12.4 0.2 11 5.5 0.1 2.1 2 0 0 2 2 2 0 DisA bacterial checkpoint controller linker region CTP_transf_2 PF01467.21 gi|57642209|ref|YP_184687.1| - 1.8e-21 76.8 0.1 2.2e-21 76.5 0.1 1.1 1 0 0 1 1 1 1 Cytidylyltransferase FAD_syn PF06574.7 gi|57642209|ref|YP_184687.1| - 5.5e-05 22.8 0.1 0.00022 20.8 0.1 1.8 2 0 0 2 2 2 1 FAD synthetase Usp PF00582.21 gi|57642209|ref|YP_184687.1| - 0.031 14.4 0.2 0.052 13.7 0.2 1.3 1 0 0 1 1 1 0 Universal stress protein family Transketolase_C PF02780.15 gi|57642209|ref|YP_184687.1| - 0.12 12.2 0.0 0.25 11.2 0.0 1.6 1 1 0 1 1 1 0 Transketolase, C-terminal domain PUA PF01472.15 gi|57642210|ref|YP_184688.1| - 3.2e-24 84.4 1.1 3.2e-24 84.4 0.8 1.9 2 0 0 2 2 2 1 PUA domain DUF1947 PF09183.5 gi|57642210|ref|YP_184688.1| - 0.002 17.8 0.9 0.0039 16.9 0.7 1.5 1 1 0 1 1 1 1 Domain of unknown function (DUF1947) OMPdecase PF00215.19 gi|57642211|ref|YP_184689.1| - 2.6e-41 141.4 0.0 3.3e-41 141.1 0.0 1.1 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family PcrB PF01884.12 gi|57642211|ref|YP_184689.1| - 0.00024 20.4 0.7 0.0067 15.6 0.0 2.8 1 1 1 3 3 3 1 PcrB family NanE PF04131.9 gi|57642211|ref|YP_184689.1| - 0.029 13.3 2.6 3.4 6.5 0.9 3.4 2 1 0 2 2 2 0 Putative N-acetylmannosamine-6-phosphate epimerase DUF4443 PF14544.1 gi|57642212|ref|YP_184690.1| - 1.9e-57 191.8 0.2 2.6e-57 191.3 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4443) DUF4093 PF13331.1 gi|57642212|ref|YP_184690.1| - 0.0099 16.0 0.0 0.058 13.5 0.0 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF4093) Ribosomal_S19e PF01090.14 gi|57642212|ref|YP_184690.1| - 0.027 13.9 0.0 0.043 13.2 0.0 1.3 1 0 0 1 1 1 0 Ribosomal protein S19e HrcA_DNA-bdg PF03444.10 gi|57642212|ref|YP_184690.1| - 0.043 13.2 0.0 0.094 12.1 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Fe_dep_repress PF01325.14 gi|57642212|ref|YP_184690.1| - 0.07 13.0 0.0 0.13 12.1 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain NAD_binding_5 PF07994.7 gi|57642213|ref|YP_184691.1| - 2.5e-48 165.0 0.0 4.1e-48 164.3 0.0 1.3 1 0 0 1 1 1 1 Myo-inositol-1-phosphate synthase Inos-1-P_synth PF01658.12 gi|57642213|ref|YP_184691.1| - 9.8e-24 83.3 0.0 1.7e-23 82.6 0.0 1.4 1 0 0 1 1 1 1 Myo-inositol-1-phosphate synthase RRM_6 PF14259.1 gi|57642213|ref|YP_184691.1| - 0.029 14.3 0.0 0.094 12.7 0.0 1.9 2 0 0 2 2 2 0 RNA recognition motif (a.k.a. RRM, RBD, or RNP domain) RRM_1 PF00076.17 gi|57642213|ref|YP_184691.1| - 0.065 12.8 0.0 0.15 11.6 0.0 1.6 1 0 0 1 1 1 0 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) NTP_transf_3 PF12804.2 gi|57642214|ref|YP_184692.1| - 4.9e-18 65.7 0.0 1.2e-17 64.4 0.0 1.6 2 0 0 2 2 2 1 MobA-like NTP transferase domain CDP-OH_P_transf PF01066.16 gi|57642214|ref|YP_184692.1| - 7.1e-18 64.7 0.8 7.1e-18 64.7 0.6 2.0 2 0 0 2 2 2 1 CDP-alcohol phosphatidyltransferase NTP_transferase PF00483.18 gi|57642214|ref|YP_184692.1| - 1.4e-08 34.3 0.0 8.1e-07 28.5 0.0 2.2 2 0 0 2 2 2 1 Nucleotidyl transferase IspD PF01128.14 gi|57642214|ref|YP_184692.1| - 3.6e-05 23.3 0.0 6.1e-05 22.6 0.0 1.3 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DUF1831 PF08866.5 gi|57642214|ref|YP_184692.1| - 0.087 13.1 0.0 0.23 11.7 0.0 1.7 1 0 0 1 1 1 0 Putative amino acid metabolism ATP_bind_4 PF01902.12 gi|57642215|ref|YP_184693.1| - 8.3e-89 296.6 1.2 9.2e-89 296.5 0.8 1.0 1 0 0 1 1 1 1 ATP-binding region QueC PF06508.8 gi|57642215|ref|YP_184693.1| - 0.0035 16.6 0.0 0.0066 15.7 0.0 1.5 1 1 0 1 1 1 1 Queuosine biosynthesis protein QueC ThiI PF02568.9 gi|57642215|ref|YP_184693.1| - 0.017 14.6 0.0 0.041 13.3 0.0 1.7 2 0 0 2 2 2 0 Thiamine biosynthesis protein (ThiI) tRNA_Me_trans PF03054.11 gi|57642215|ref|YP_184693.1| - 0.024 13.2 0.1 0.051 12.1 0.0 1.6 1 1 0 1 1 1 0 tRNA methyl transferase Asn_synthase PF00733.16 gi|57642215|ref|YP_184693.1| - 0.045 13.2 0.0 0.42 10.0 0.0 2.2 1 1 0 1 1 1 0 Asparagine synthase DUF1433 PF07252.6 gi|57642215|ref|YP_184693.1| - 0.12 12.5 0.1 0.34 11.1 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1433) ABC_tran PF00005.22 gi|57642216|ref|YP_184694.1| - 1.1e-27 97.0 0.0 1.6e-27 96.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|57642216|ref|YP_184694.1| - 4.8e-13 49.7 2.4 7.2e-08 32.7 0.1 2.3 1 1 0 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|57642216|ref|YP_184694.1| - 0.0015 18.0 0.2 0.0029 17.1 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|57642216|ref|YP_184694.1| - 0.0018 18.4 0.3 2.1 8.5 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_10 PF12846.2 gi|57642216|ref|YP_184694.1| - 0.0061 16.0 0.4 0.47 9.8 0.3 2.2 2 0 0 2 2 2 1 AAA-like domain AAA_17 PF13207.1 gi|57642216|ref|YP_184694.1| - 0.035 14.9 0.6 0.47 11.2 0.1 2.5 2 1 0 2 2 2 0 AAA domain Mg_chelatase PF01078.16 gi|57642216|ref|YP_184694.1| - 0.042 13.0 0.0 0.085 12.0 0.0 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_30 PF13604.1 gi|57642216|ref|YP_184694.1| - 0.043 13.3 0.1 0.64 9.5 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.1 gi|57642216|ref|YP_184694.1| - 0.049 13.9 0.4 0.049 13.9 0.3 2.0 2 1 0 2 2 2 0 AAA domain SMC_N PF02463.14 gi|57642216|ref|YP_184694.1| - 0.049 12.8 0.2 0.51 9.5 0.1 2.0 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA PF00004.24 gi|57642216|ref|YP_184694.1| - 0.053 13.7 0.4 0.19 11.9 0.3 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) SbcCD_C PF13558.1 gi|57642216|ref|YP_184694.1| - 0.099 12.5 0.0 0.2 11.5 0.0 1.6 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit STAS PF01740.16 gi|57642216|ref|YP_184694.1| - 0.1 11.9 0.0 0.2 11.0 0.0 1.6 1 1 0 1 1 1 0 STAS domain Rad17 PF03215.10 gi|57642216|ref|YP_184694.1| - 0.11 11.1 0.0 0.16 10.6 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein DUF2074 PF09847.4 gi|57642217|ref|YP_184695.1| - 2.4e-133 445.1 25.4 2.8e-133 444.9 17.6 1.0 1 0 0 1 1 1 1 Predicted permease (DUF2074) DUF498 PF04430.9 gi|57642218|ref|YP_184696.1| - 3e-16 58.9 0.0 3.3e-16 58.8 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF498/DUF598) NUDIX PF00293.23 gi|57642219|ref|YP_184697.1| - 2.3e-24 85.5 0.0 3.4e-24 85.0 0.0 1.2 1 0 0 1 1 1 1 NUDIX domain NUDIX_4 PF14815.1 gi|57642219|ref|YP_184697.1| - 0.0054 16.1 0.0 0.081 12.3 0.0 2.5 1 1 1 2 2 2 1 NUDIX domain PfkB PF00294.19 gi|57642220|ref|YP_184698.1| - 0.00063 18.9 0.0 0.0031 16.6 0.0 1.8 2 0 0 2 2 2 1 pfkB family carbohydrate kinase Gar1 PF04410.9 gi|57642221|ref|YP_184699.1| - 4.7e-08 32.6 2.7 1.1e-07 31.4 1.9 1.5 1 1 0 1 1 1 1 Gar1/Naf1 RNA binding region TFIIB PF00382.14 gi|57642222|ref|YP_184700.1| - 6.8e-43 144.3 4.2 1.3e-22 79.4 0.4 2.2 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|57642222|ref|YP_184700.1| - 9.3e-21 72.8 3.4 5.6e-20 70.3 1.7 2.1 2 0 0 2 2 2 1 TFIIB zinc-binding Sigma70_r4 PF04545.11 gi|57642222|ref|YP_184700.1| - 5.1e-05 22.4 2.0 0.0015 17.7 0.2 3.4 3 0 0 3 3 3 1 Sigma-70, region 4 Cyclin_N PF00134.18 gi|57642222|ref|YP_184700.1| - 0.0013 18.3 0.0 0.17 11.4 0.0 2.2 2 0 0 2 2 2 1 Cyclin, N-terminal domain FYDLN_acid PF09538.5 gi|57642222|ref|YP_184700.1| - 0.0014 19.1 0.0 0.0027 18.2 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (FYDLN_acid) HTH_23 PF13384.1 gi|57642222|ref|YP_184700.1| - 0.0017 17.9 0.1 0.027 14.1 0.1 2.9 2 0 0 2 2 2 1 Homeodomain-like domain HTH_AsnC-type PF13404.1 gi|57642222|ref|YP_184700.1| - 0.0056 16.1 0.1 0.037 13.5 0.0 2.4 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.1 gi|57642222|ref|YP_184700.1| - 0.011 15.0 0.0 0.047 13.0 0.0 2.1 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Lar_restr_allev PF14354.1 gi|57642222|ref|YP_184700.1| - 0.015 15.5 0.4 0.032 14.5 0.3 1.5 1 0 0 1 1 1 0 Restriction alleviation protein Lar Sigma70_r4_2 PF08281.7 gi|57642222|ref|YP_184700.1| - 0.023 14.1 0.6 0.1 12.0 0.1 2.4 2 0 0 2 2 2 0 Sigma-70, region 4 GerE PF00196.14 gi|57642222|ref|YP_184700.1| - 0.028 13.7 0.6 0.21 10.9 0.0 2.6 3 0 0 3 3 3 0 Bacterial regulatory proteins, luxR family TrmB PF01978.14 gi|57642222|ref|YP_184700.1| - 0.039 13.6 0.9 1.3 8.8 0.2 2.5 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB Cyclin_C PF02984.14 gi|57642222|ref|YP_184700.1| - 0.043 13.7 0.0 0.57 10.1 0.0 2.2 2 0 0 2 2 2 0 Cyclin, C-terminal domain DZR PF12773.2 gi|57642222|ref|YP_184700.1| - 0.056 13.2 0.1 0.1 12.4 0.1 1.3 1 0 0 1 1 1 0 Double zinc ribbon OrfB_Zn_ribbon PF07282.6 gi|57642222|ref|YP_184700.1| - 0.094 12.3 0.3 0.19 11.3 0.2 1.5 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Rubredoxin PF00301.15 gi|57642222|ref|YP_184700.1| - 0.1 12.4 3.3 2.1 8.3 0.2 2.4 1 1 1 2 2 2 0 Rubredoxin zf-ribbon_3 PF13248.1 gi|57642222|ref|YP_184700.1| - 0.11 11.7 2.3 0.33 10.2 1.5 1.8 1 1 1 2 2 2 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|57642222|ref|YP_184700.1| - 0.13 12.0 0.7 0.33 10.8 0.5 1.7 1 0 0 1 1 1 0 Transposase zinc-ribbon domain zf-NADH-PPase PF09297.6 gi|57642222|ref|YP_184700.1| - 0.15 11.5 1.8 1.6 8.3 0.0 2.8 3 0 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain Prim_Zn_Ribbon PF08273.7 gi|57642222|ref|YP_184700.1| - 0.17 12.0 0.3 0.37 10.9 0.2 1.6 1 0 0 1 1 1 0 Zinc-binding domain of primase-helicase Metallophos_2 PF12850.2 gi|57642223|ref|YP_184701.1| - 2.1e-29 102.3 0.0 2.4e-29 102.1 0.0 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|57642223|ref|YP_184701.1| - 6.9e-08 32.1 1.5 0.0015 17.9 0.0 2.7 1 1 1 2 2 2 2 Calcineurin-like phosphoesterase Peripla_BP_2 PF01497.13 gi|57642223|ref|YP_184701.1| - 0.099 11.7 0.0 0.15 11.1 0.0 1.3 1 0 0 1 1 1 0 Periplasmic binding protein CBFD_NFYB_HMF PF00808.18 gi|57642224|ref|YP_184702.1| - 2.2e-20 72.4 3.5 2.4e-20 72.3 2.4 1.0 1 0 0 1 1 1 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Histone PF00125.19 gi|57642224|ref|YP_184702.1| - 1.6e-11 44.1 0.8 1.8e-11 43.9 0.5 1.0 1 0 0 1 1 1 1 Core histone H2A/H2B/H3/H4 TAF PF02969.12 gi|57642224|ref|YP_184702.1| - 4.3e-08 32.9 0.9 4.4e-08 32.9 0.6 1.1 1 0 0 1 1 1 1 TATA box binding protein associated factor (TAF) CENP-S PF15630.1 gi|57642224|ref|YP_184702.1| - 1.3e-06 28.4 0.1 1.4e-06 28.3 0.1 1.1 1 0 0 1 1 1 1 Kinetochore component CENP-S TFIID-18kDa PF02269.11 gi|57642224|ref|YP_184702.1| - 0.00099 18.8 0.0 0.0011 18.7 0.0 1.1 1 0 0 1 1 1 1 Transcription initiation factor IID, 18kD subunit TFIID-31kDa PF02291.10 gi|57642224|ref|YP_184702.1| - 0.0018 18.0 0.2 0.0022 17.7 0.2 1.3 1 1 0 1 1 1 1 Transcription initiation factor IID, 31kD subunit TFIID_20kDa PF03847.8 gi|57642224|ref|YP_184702.1| - 0.0073 16.5 0.2 0.0081 16.4 0.1 1.1 1 0 0 1 1 1 1 Transcription initiation factor TFIID subunit A DUF1931 PF09123.6 gi|57642224|ref|YP_184702.1| - 0.0079 16.1 0.9 0.0089 15.9 0.7 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1931) Bromo_TP PF07524.8 gi|57642224|ref|YP_184702.1| - 0.01 15.5 0.0 0.011 15.4 0.0 1.1 1 0 0 1 1 1 0 Bromodomain associated CENP-T PF15511.1 gi|57642224|ref|YP_184702.1| - 0.013 14.7 0.1 0.021 14.0 0.1 1.3 1 0 0 1 1 1 0 Centromere kinetochore component CENP-T RuBisCO_large PF00016.15 gi|57642225|ref|YP_184703.1| - 1.6e-74 250.5 0.0 2.1e-74 250.1 0.0 1.1 1 0 0 1 1 1 1 Ribulose bisphosphate carboxylase large chain, catalytic domain RuBisCO_large_N PF02788.11 gi|57642225|ref|YP_184703.1| - 3.1e-30 104.4 0.0 4.9e-29 100.5 0.0 2.5 3 0 0 3 3 3 1 Ribulose bisphosphate carboxylase large chain, N-terminal domain HTH_20 PF12840.2 gi|57642226|ref|YP_184704.1| - 2.9e-14 52.6 0.4 8.9e-14 51.0 0.3 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|57642226|ref|YP_184704.1| - 1e-13 50.7 0.1 1.8e-13 49.9 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|57642226|ref|YP_184704.1| - 8.6e-06 25.3 0.1 2.2e-05 24.0 0.1 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB PadR PF03551.9 gi|57642226|ref|YP_184704.1| - 2.4e-05 24.0 0.3 0.00011 21.8 0.2 2.1 1 1 0 1 1 1 1 Transcriptional regulator PadR-like family MarR_2 PF12802.2 gi|57642226|ref|YP_184704.1| - 2.4e-05 23.8 0.2 6.1e-05 22.6 0.1 1.6 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|57642226|ref|YP_184704.1| - 5.5e-05 22.4 0.6 0.00034 19.9 0.4 2.3 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding ArsR PF09824.4 gi|57642226|ref|YP_184704.1| - 7.7e-05 22.0 0.2 0.0019 17.5 0.0 2.2 2 0 0 2 2 2 1 ArsR transcriptional regulator HTH_11 PF08279.7 gi|57642226|ref|YP_184704.1| - 0.00098 18.7 0.2 0.0023 17.5 0.1 1.7 1 0 0 1 1 1 1 HTH domain HTH_CodY PF08222.6 gi|57642226|ref|YP_184704.1| - 0.0018 17.5 0.0 0.004 16.4 0.0 1.5 1 0 0 1 1 1 1 CodY helix-turn-helix domain HxlR PF01638.12 gi|57642226|ref|YP_184704.1| - 0.018 14.6 1.2 0.026 14.1 0.1 1.9 2 1 1 3 3 3 0 HxlR-like helix-turn-helix Hemerythrin PF01814.18 gi|57642226|ref|YP_184704.1| - 0.019 15.1 1.4 0.035 14.2 0.7 1.7 2 0 0 2 2 2 0 Hemerythrin HHE cation binding domain GntR PF00392.16 gi|57642226|ref|YP_184704.1| - 0.021 14.2 0.1 0.052 12.9 0.1 1.7 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family RPW8 PF05659.6 gi|57642226|ref|YP_184704.1| - 0.026 14.0 3.8 0.091 12.3 2.5 1.8 2 0 0 2 2 2 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 SYF2 PF08231.7 gi|57642226|ref|YP_184704.1| - 0.031 14.4 0.8 0.054 13.6 0.5 1.4 1 1 0 1 1 1 0 SYF2 splicing factor HTH_10 PF04967.7 gi|57642226|ref|YP_184704.1| - 0.031 13.8 0.0 0.071 12.7 0.0 1.6 1 0 0 1 1 1 0 HTH DNA binding domain LexA_DNA_bind PF01726.11 gi|57642226|ref|YP_184704.1| - 0.031 13.8 0.1 0.14 11.7 0.0 2.1 2 0 0 2 2 2 0 LexA DNA binding domain ScpA_ScpB PF02616.9 gi|57642226|ref|YP_184704.1| - 0.034 13.7 5.5 0.053 13.0 3.8 1.3 1 0 0 1 1 1 0 ScpA/B protein IF2_N PF04760.10 gi|57642226|ref|YP_184704.1| - 0.045 13.4 0.1 0.19 11.3 0.0 2.1 2 0 0 2 2 2 0 Translation initiation factor IF-2, N-terminal region Phage_rep_org_N PF09681.5 gi|57642226|ref|YP_184704.1| - 0.07 12.7 0.3 1.2 8.7 0.0 2.2 2 0 0 2 2 2 0 N-terminal phage replisome organiser (Phage_rep_org_N) DUF2513 PF10711.4 gi|57642226|ref|YP_184704.1| - 0.1 12.6 0.0 0.27 11.3 0.0 1.7 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) DUF2205 PF10224.4 gi|57642226|ref|YP_184704.1| - 0.25 10.9 6.2 0.26 10.8 2.2 2.1 1 1 1 2 2 2 0 Predicted coiled-coil protein (DUF2205) OmpH PF03938.9 gi|57642226|ref|YP_184704.1| - 0.25 11.2 3.2 0.39 10.6 2.2 1.2 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) Ribosomal_S17e PF00833.13 gi|57642227|ref|YP_184705.1| - 1.1e-20 73.6 1.3 1.2e-20 73.4 0.9 1.0 1 0 0 1 1 1 1 Ribosomal S17 MerR PF00376.18 gi|57642227|ref|YP_184705.1| - 0.027 14.0 0.0 0.048 13.2 0.0 1.4 1 0 0 1 1 1 0 MerR family regulatory protein DUF371 PF04027.8 gi|57642228|ref|YP_184706.1| - 1.6e-54 183.1 0.3 1.8e-54 182.9 0.2 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF371) UPF0128 PF03673.8 gi|57642229|ref|YP_184707.1| - 3.1e-112 373.2 1.2 3.4e-112 373.1 0.9 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0128) DUF3368 PF11848.3 gi|57642230|ref|YP_184708.1| - 0.033 13.7 0.0 0.057 12.9 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3368) Radical_SAM PF04055.16 gi|57642231|ref|YP_184709.1| - 2e-08 34.6 0.0 5.1e-08 33.2 0.0 1.7 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|57642231|ref|YP_184709.1| - 0.075 13.0 0.1 0.52 10.3 0.0 2.3 3 0 0 3 3 3 0 4Fe-4S single cluster domain TPR_12 PF13424.1 gi|57642232|ref|YP_184710.1| - 1.4e-37 127.4 34.7 2.1e-15 56.4 2.1 4.6 2 1 4 6 6 6 5 Tetratricopeptide repeat TPR_14 PF13428.1 gi|57642232|ref|YP_184710.1| - 2.5e-17 61.7 9.1 0.0014 19.0 0.0 6.1 4 2 2 6 6 5 4 Tetratricopeptide repeat TPR_7 PF13176.1 gi|57642232|ref|YP_184710.1| - 3.3e-17 60.8 9.9 0.00054 19.5 0.1 5.9 5 0 0 5 5 5 4 Tetratricopeptide repeat TPR_8 PF13181.1 gi|57642232|ref|YP_184710.1| - 4.8e-15 54.1 12.1 0.0037 16.9 0.3 5.7 5 0 0 5 5 5 5 Tetratricopeptide repeat TPR_16 PF13432.1 gi|57642232|ref|YP_184710.1| - 5.1e-15 55.6 10.7 3.7e-08 33.8 0.7 4.0 3 2 1 4 4 3 2 Tetratricopeptide repeat TPR_2 PF07719.12 gi|57642232|ref|YP_184710.1| - 7.3e-13 47.3 26.4 0.0029 17.4 0.6 6.5 7 0 0 7 7 6 5 Tetratricopeptide repeat TPR_1 PF00515.23 gi|57642232|ref|YP_184710.1| - 5.2e-12 44.8 18.5 0.00034 20.1 0.5 6.0 6 0 0 6 6 6 5 Tetratricopeptide repeat TPR_10 PF13374.1 gi|57642232|ref|YP_184710.1| - 1.1e-11 44.2 6.5 0.0003 20.6 0.1 5.3 5 0 0 5 5 5 2 Tetratricopeptide repeat TPR_6 PF13174.1 gi|57642232|ref|YP_184710.1| - 1.6e-11 43.8 8.5 0.00071 19.8 0.1 6.7 7 0 0 7 7 6 2 Tetratricopeptide repeat TPR_11 PF13414.1 gi|57642232|ref|YP_184710.1| - 3.4e-11 42.6 23.2 1.6e-07 30.8 0.5 4.4 3 1 2 6 6 6 3 TPR repeat TPR_19 PF14559.1 gi|57642232|ref|YP_184710.1| - 8.7e-10 38.7 17.7 2.2e-05 24.6 0.6 5.1 3 1 3 7 7 5 4 Tetratricopeptide repeat TPR_17 PF13431.1 gi|57642232|ref|YP_184710.1| - 1.3e-07 31.2 7.5 0.077 13.2 0.1 5.8 6 1 0 6 6 5 2 Tetratricopeptide repeat NARP1 PF12569.3 gi|57642232|ref|YP_184710.1| - 1.3e-07 30.7 10.4 0.00056 18.7 0.9 3.3 1 1 2 3 3 3 3 NMDA receptor-regulated protein 1 TPR_15 PF13429.1 gi|57642232|ref|YP_184710.1| - 1.7e-07 30.6 10.8 0.0014 17.8 0.2 4.8 1 1 3 4 4 4 1 Tetratricopeptide repeat Apc5 PF12862.2 gi|57642232|ref|YP_184710.1| - 7.2e-07 28.9 3.3 0.0042 16.9 0.2 3.9 1 1 2 3 3 3 2 Anaphase-promoting complex subunit 5 Apc3 PF12895.2 gi|57642232|ref|YP_184710.1| - 1.3e-06 28.4 9.9 0.00059 19.9 1.5 3.3 1 1 1 3 3 3 2 Anaphase-promoting complex, cyclosome, subunit 3 TPR_21 PF09976.4 gi|57642232|ref|YP_184710.1| - 4e-06 26.8 4.5 8.3e-06 25.8 1.3 2.7 2 1 0 2 2 2 1 Tetratricopeptide repeat TPR_4 PF07721.9 gi|57642232|ref|YP_184710.1| - 4.6e-06 26.5 0.0 1.3 9.7 0.0 5.0 5 0 0 5 5 5 1 Tetratricopeptide repeat TPR_5 PF12688.2 gi|57642232|ref|YP_184710.1| - 4.9e-06 26.5 0.7 0.0017 18.3 0.1 3.1 1 1 2 3 3 3 2 Tetratrico peptide repeat PPR PF01535.15 gi|57642232|ref|YP_184710.1| - 2.5e-05 23.9 10.8 2.1 8.5 0.0 6.5 7 0 0 7 7 5 1 PPR repeat SNAP PF14938.1 gi|57642232|ref|YP_184710.1| - 4e-05 22.9 9.0 0.00013 21.2 2.9 2.9 2 1 0 2 2 2 1 Soluble NSF attachment protein, SNAP LppC PF04348.8 gi|57642232|ref|YP_184710.1| - 0.0011 17.6 0.1 0.0016 17.0 0.0 1.2 1 0 0 1 1 1 1 LppC putative lipoprotein DUF2225 PF09986.4 gi|57642232|ref|YP_184710.1| - 0.0019 17.7 3.6 0.0019 17.7 2.5 2.7 2 1 1 3 3 3 1 Uncharacterized protein conserved in bacteria (DUF2225) RPN7 PF10602.4 gi|57642232|ref|YP_184710.1| - 0.0063 15.9 1.0 0.0063 15.9 0.7 4.4 2 1 3 5 5 4 1 26S proteasome subunit RPN7 RhoGAP PF00620.22 gi|57642232|ref|YP_184710.1| - 0.014 14.9 0.5 0.014 14.9 0.3 2.0 3 0 0 3 3 1 0 RhoGAP domain MIT PF04212.13 gi|57642232|ref|YP_184710.1| - 0.016 15.0 10.9 0.024 14.4 0.2 4.4 3 1 1 4 4 3 0 MIT (microtubule interacting and transport) domain DUF3856 PF12968.2 gi|57642232|ref|YP_184710.1| - 0.093 12.5 4.8 2 8.2 0.0 3.6 2 1 2 4 4 4 0 Domain of Unknown Function (DUF3856) SnoaL_3 PF13474.1 gi|57642232|ref|YP_184710.1| - 0.097 12.7 2.2 0.49 10.4 0.0 2.7 3 0 0 3 3 2 0 SnoaL-like domain Peptidase_M13 PF01431.16 gi|57642232|ref|YP_184710.1| - 0.12 11.5 0.2 0.97 8.5 0.1 2.2 2 0 0 2 2 2 0 Peptidase family M13 Fis1_TPR_C PF14853.1 gi|57642232|ref|YP_184710.1| - 0.24 11.2 4.3 11 6.0 0.0 3.2 3 0 0 3 3 3 0 Fis1 C-terminal tetratricopeptide repeat DUF935 PF06074.7 gi|57642232|ref|YP_184710.1| - 0.49 9.0 5.6 2.1 6.9 0.1 2.9 2 1 1 3 3 3 0 Protein of unknown function (DUF935) DUF4326 PF14216.1 gi|57642232|ref|YP_184710.1| - 0.72 10.4 2.2 6.8 7.3 0.1 3.2 2 1 0 2 2 2 0 Domain of unknown function (DUF4326) DUF1955 PF09205.5 gi|57642232|ref|YP_184710.1| - 1.3 8.5 4.9 2.3 7.7 1.0 2.8 2 1 1 4 4 4 0 Domain of unknown function (DUF1955) Cas_DxTHG PF09455.5 gi|57642232|ref|YP_184710.1| - 2.3 7.2 17.5 38 3.2 2.8 2.8 1 1 1 2 2 2 0 CRISPR-associated (Cas) DxTHG family SPOB_a PF14689.1 gi|57642232|ref|YP_184710.1| - 3 7.4 8.4 5.2 6.7 0.0 4.7 6 0 0 6 6 6 0 Sensor_kinase_SpoOB-type, alpha-helical domain DUF4398 PF14346.1 gi|57642232|ref|YP_184710.1| - 6.7 6.8 8.2 4.9 7.2 0.5 3.7 1 1 1 2 2 2 0 Domain of unknown function (DUF4398) NRDD PF13597.1 gi|57642233|ref|YP_184711.1| - 2.7e-186 619.8 0.0 3.1e-186 619.6 0.0 1.0 1 0 0 1 1 1 1 Anaerobic ribonucleoside-triphosphate reductase DZR PF12773.2 gi|57642233|ref|YP_184711.1| - 0.014 15.2 0.2 0.026 14.3 0.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon HypA PF01155.14 gi|57642233|ref|YP_184711.1| - 0.045 13.4 0.2 0.09 12.4 0.1 1.4 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family DUF35_N PF12172.3 gi|57642233|ref|YP_184711.1| - 0.059 13.2 2.0 0.13 12.1 1.4 1.6 1 0 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-ribbon_3 PF13248.1 gi|57642233|ref|YP_184711.1| - 0.075 12.2 2.6 0.17 11.1 1.8 1.6 1 0 0 1 1 1 0 zinc-ribbon domain DUF3240 PF11582.3 gi|57642233|ref|YP_184711.1| - 0.18 11.7 0.0 0.41 10.6 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3240) Zn-ribbon_8 PF09723.5 gi|57642233|ref|YP_184711.1| - 0.28 11.1 2.7 6.6 6.7 2.6 2.3 1 1 1 2 2 2 0 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|57642233|ref|YP_184711.1| - 3 7.7 6.6 4.1 7.3 0.2 3.3 2 1 1 3 3 3 0 Transposase zinc-ribbon domain Radical_SAM PF04055.16 gi|57642234|ref|YP_184712.1| - 1.6e-16 60.9 0.0 2.7e-16 60.1 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|57642234|ref|YP_184712.1| - 2.8e-09 37.0 0.0 4.3e-09 36.4 0.0 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|57642234|ref|YP_184712.1| - 3.7e-09 36.8 0.0 5.1e-09 36.3 0.0 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain PTH2 PF01981.11 gi|57642235|ref|YP_184713.1| - 1.4e-47 160.1 0.2 1.6e-47 159.9 0.2 1.0 1 0 0 1 1 1 1 Peptidyl-tRNA hydrolase PTH2 Hydrolase_3 PF08282.7 gi|57642236|ref|YP_184714.1| - 3.9e-28 98.7 0.0 2.6e-18 66.5 0.0 2.1 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|57642236|ref|YP_184714.1| - 2.8e-09 37.7 0.1 1e-06 29.3 0.1 2.5 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|57642236|ref|YP_184714.1| - 0.0016 18.6 0.6 0.0085 16.2 0.4 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|57642236|ref|YP_184714.1| - 0.0048 17.1 0.0 0.9 9.7 0.0 3.0 3 1 0 3 3 3 1 Haloacid dehalogenase-like hydrolase HTH_19 PF12844.2 gi|57642236|ref|YP_184714.1| - 0.0059 16.6 0.1 20 5.3 0.0 4.1 4 1 0 5 5 5 0 Helix-turn-helix domain Hydrolase_6 PF13344.1 gi|57642236|ref|YP_184714.1| - 0.0076 16.1 0.0 0.024 14.5 0.0 1.9 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Peptidase_M55 PF04951.8 gi|57642236|ref|YP_184714.1| - 0.055 12.6 0.0 0.098 11.8 0.0 1.4 1 0 0 1 1 1 0 D-aminopeptidase S6PP PF05116.8 gi|57642236|ref|YP_184714.1| - 0.057 12.7 0.0 0.98 8.6 0.0 2.2 2 1 0 2 2 2 0 Sucrose-6F-phosphate phosphohydrolase TruD PF01142.13 gi|57642237|ref|YP_184715.1| - 5.1e-112 374.2 0.0 5.7e-112 374.1 0.0 1.0 1 0 0 1 1 1 1 tRNA pseudouridine synthase D (TruD) Cpn60_TCP1 PF00118.19 gi|57642238|ref|YP_184716.1| - 6.3e-174 579.1 16.8 7.1e-174 578.9 11.7 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family Sec1 PF00995.18 gi|57642238|ref|YP_184716.1| - 0.059 11.9 0.6 0.1 11.2 0.0 1.6 2 0 0 2 2 2 0 Sec1 family FRD2 PF03197.8 gi|57642238|ref|YP_184716.1| - 0.17 12.4 0.0 0.17 12.4 0.0 2.6 4 0 0 4 4 4 0 Bacteriophage FRD2 protein Nol1_Nop2_Fmu PF01189.12 gi|57642239|ref|YP_184717.1| - 6.7e-50 170.0 0.0 8.4e-50 169.7 0.0 1.1 1 0 0 1 1 1 1 NOL1/NOP2/sun family NusB PF01029.13 gi|57642239|ref|YP_184717.1| - 1.5e-20 73.5 0.3 3e-20 72.5 0.2 1.5 1 0 0 1 1 1 1 NusB family Methyltransf_31 PF13847.1 gi|57642239|ref|YP_184717.1| - 1.4e-14 53.9 0.1 1.6e-13 50.5 0.0 2.4 2 1 0 2 2 2 1 Methyltransferase domain MTS PF05175.9 gi|57642239|ref|YP_184717.1| - 3.2e-11 42.9 0.0 6.6e-10 38.6 0.0 2.2 2 0 0 2 2 2 1 Methyltransferase small domain Methyltransf_18 PF12847.2 gi|57642239|ref|YP_184717.1| - 8e-10 39.2 0.0 4.5e-09 36.8 0.0 2.3 2 1 0 2 2 2 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|57642239|ref|YP_184717.1| - 1.1e-08 34.5 0.0 4.9e-08 32.3 0.0 2.0 1 1 1 2 2 2 1 ubiE/COQ5 methyltransferase family PCMT PF01135.14 gi|57642239|ref|YP_184717.1| - 3.9e-06 26.5 0.0 9.1e-06 25.3 0.0 1.6 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_11 PF08241.7 gi|57642239|ref|YP_184717.1| - 0.005 17.2 0.0 0.023 15.1 0.0 2.2 2 0 0 2 2 1 1 Methyltransferase domain FtsJ PF01728.14 gi|57642239|ref|YP_184717.1| - 0.0053 16.7 0.0 0.0099 15.8 0.0 1.5 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_12 PF08242.7 gi|57642239|ref|YP_184717.1| - 0.03 14.8 0.1 0.3 11.5 0.0 2.6 2 1 0 2 2 2 0 Methyltransferase domain Methyltransf_15 PF09445.5 gi|57642239|ref|YP_184717.1| - 0.073 12.6 0.0 0.13 11.7 0.0 1.5 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase UPF0175 PF03683.8 gi|57642240|ref|YP_184718.1| - 2.2e-06 27.0 0.9 3.5e-06 26.3 0.6 1.3 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0175) DUF4088 PF13317.1 gi|57642240|ref|YP_184718.1| - 0.063 12.6 0.1 0.066 12.5 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4088)