#                                                                       --- full sequence ---- --- best 1 domain ---- --- domain number estimation ----
# target name        accession  query name                   accession    E-value  score  bias   E-value  score  bias   exp reg clu  ov env dom rep inc description of target
#------------------- ----------         -------------------- ---------- --------- ------ ----- --------- ------ -----   --- --- --- --- --- --- --- --- ---------------------
DUF1848	PF08902.11	gi|74076684|ref|YP_308887.1|	-	0.13	12.0	0.6	0.83	9.3	0.1	2.5	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF1848)
Fmp27_WPPW	PF10359.9	gi|74076684|ref|YP_308887.1|	-	0.13	11.1	2.1	0.15	10.9	0.5	1.7	2	0	0	2	2	2	0	RNA	pol	II	promoter	Fmp27	protein	domain
V-SNARE	PF05008.15	gi|74076684|ref|YP_308887.1|	-	1.5	9.3	10.2	0.53	10.7	1.2	2.9	3	0	0	3	3	3	0	Vesicle	transport	v-SNARE	protein	N-terminus
DUF2551	PF10826.8	gi|74076685|ref|YP_308888.1|	-	0.058	13.6	0.1	0.16	12.2	0.1	1.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2551)
#
# Program:         hmmscan
# Version:         3.2.1 (June 2018)
# Pipeline mode:   SCAN
# Query file:      /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Pyrococcus_abyssi_GE5_uid62903/NC_001773.faa
# Target file:     /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm
# Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Pyrococcus_abyssi_GE5_uid62903/NC_001773.PFam32-A --tblout /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Pyrococcus_abyssi_GE5_uid62903/NC_001773.PFam32-A.tblout --cpu 20 /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Pyrococcus_abyssi_GE5_uid62903/NC_001773.faa 
# Current dir:     /oak/stanford/groups/akundaje/marinovg/genomes
# Date:            Mon Mar 25 15:55:46 2019
# [ok]