# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- CRISPR_Cas2 PF09827.9 gi|48477074|ref|YP_022780.1| - 1.3e-18 66.9 1.7 1.5e-18 66.7 1.7 1.1 1 0 0 1 1 1 1 CRISPR associated protein Cas2 Cas_Cas1 PF01867.16 gi|48477075|ref|YP_022781.1| - 5.2e-69 232.5 1.5 7.1e-69 232.1 1.5 1.2 1 0 0 1 1 1 1 CRISPR associated protein Cas1 ACT_7 PF13840.6 gi|48477075|ref|YP_022781.1| - 0.00013 21.7 0.3 0.00024 20.8 0.3 1.5 1 0 0 1 1 1 1 ACT domain Cas_Cas4 PF01930.17 gi|48477076|ref|YP_022782.1| - 3.3e-40 137.8 0.5 3.7e-40 137.7 0.5 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF83 PDDEXK_1 PF12705.7 gi|48477076|ref|YP_022782.1| - 0.00022 21.2 0.1 0.00028 20.9 0.1 1.1 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily v110 PF01639.17 gi|48477076|ref|YP_022782.1| - 0.039 13.8 0.8 0.094 12.6 0.8 1.6 1 0 0 1 1 1 0 Viral family 110 ResIII PF04851.15 gi|48477077|ref|YP_022783.1| - 1.2e-12 48.2 0.7 1.2e-12 48.2 0.7 2.1 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit DEAD PF00270.29 gi|48477077|ref|YP_022783.1| - 1.2e-11 44.7 0.0 2.9e-11 43.4 0.0 1.6 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|48477077|ref|YP_022783.1| - 1.1e-06 29.0 2.3 5.5e-06 26.7 0.1 3.1 2 1 1 3 3 3 1 Helicase conserved C-terminal domain AAA_22 PF13401.6 gi|48477077|ref|YP_022783.1| - 0.012 15.9 0.7 0.17 12.1 0.7 2.3 1 1 0 1 1 1 0 AAA domain T2SSE PF00437.20 gi|48477077|ref|YP_022783.1| - 0.054 12.5 0.0 0.13 11.3 0.0 1.6 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_30 PF13604.6 gi|48477077|ref|YP_022783.1| - 0.19 11.4 0.0 1.2 8.8 0.0 2.0 1 1 0 1 1 1 0 AAA domain Csc2 PF18320.1 gi|48477079|ref|YP_022785.1| - 1.9e-14 53.3 0.1 2.4e-14 53.0 0.1 1.1 1 0 0 1 1 1 1 Csc2 Crispr DALR_1 PF05746.15 gi|48477080|ref|YP_022786.1| - 0.35 11.0 2.6 0.57 10.4 0.4 2.5 3 0 0 3 3 3 0 DALR anticodon binding domain Cas_Cas6 PF01881.16 gi|48477081|ref|YP_022787.1| - 2.1e-21 77.0 0.4 2.1e-21 77.0 0.4 1.8 2 0 0 2 2 2 1 CRISPR associated protein Cas6 HTH_12 PF08461.10 gi|48477082|ref|YP_022788.1| - 0.0017 18.2 0.2 0.0032 17.4 0.2 1.4 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain Arg_repressor PF01316.21 gi|48477082|ref|YP_022788.1| - 0.091 12.5 0.1 0.19 11.5 0.1 1.5 1 0 0 1 1 1 0 Arginine repressor, DNA binding domain HTH_24 PF13412.6 gi|48477082|ref|YP_022788.1| - 0.11 12.1 1.4 1 9.0 0.2 2.4 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding BcrAD_BadFG PF01869.20 gi|48477083|ref|YP_022789.1| - 2.5e-34 119.0 0.2 3e-34 118.7 0.2 1.1 1 0 0 1 1 1 1 BadF/BadG/BcrA/BcrD ATPase family ROK PF00480.20 gi|48477083|ref|YP_022789.1| - 0.022 14.3 0.2 1.1 8.7 0.0 2.1 2 0 0 2 2 2 0 ROK family SIS PF01380.22 gi|48477084|ref|YP_022790.1| - 1e-22 80.4 2.6 1.8e-14 53.7 0.9 2.5 3 0 0 3 3 3 2 SIS domain SIS_2 PF13580.6 gi|48477084|ref|YP_022790.1| - 0.0003 20.8 0.2 0.0012 18.9 0.0 2.0 2 0 0 2 2 2 1 SIS domain M11L PF11099.8 gi|48477084|ref|YP_022790.1| - 0.0075 16.6 5.3 2.2 8.6 3.9 2.3 1 1 1 2 2 2 2 Apoptosis regulator M11L like Amidohydro_1 PF01979.20 gi|48477085|ref|YP_022791.1| - 1.2e-17 64.3 1.4 1.7e-17 63.8 1.4 1.2 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|48477085|ref|YP_022791.1| - 8.4e-08 32.1 0.3 0.0021 17.6 0.0 2.2 2 0 0 2 2 2 2 Amidohydrolase family Spindle_Spc25 PF08234.12 gi|48477085|ref|YP_022791.1| - 0.19 11.9 0.0 0.38 11.0 0.0 1.5 1 0 0 1 1 1 0 Chromosome segregation protein Spc25 SIS_2 PF13580.6 gi|48477086|ref|YP_022792.1| - 5.7e-11 42.6 0.2 1.1e-10 41.7 0.2 1.4 1 0 0 1 1 1 1 SIS domain SIS PF01380.22 gi|48477086|ref|YP_022792.1| - 1e-09 38.3 2.1 5e-08 32.9 0.2 2.3 2 0 0 2 2 2 2 SIS domain Peptidase_S13 PF02113.15 gi|48477087|ref|YP_022793.1| - 4e-27 95.0 0.0 1.6e-18 66.7 0.0 2.1 2 0 0 2 2 2 2 D-Ala-D-Ala carboxypeptidase 3 (S13) family Peptidase_S11 PF00768.20 gi|48477087|ref|YP_022793.1| - 0.022 14.2 0.0 0.047 13.1 0.0 1.5 2 0 0 2 2 2 0 D-alanyl-D-alanine carboxypeptidase Beta-lactamase2 PF13354.6 gi|48477087|ref|YP_022793.1| - 0.031 13.9 0.0 1.6 8.3 0.0 2.3 2 0 0 2 2 2 0 Beta-lactamase enzyme family Orn_Arg_deC_N PF02784.16 gi|48477088|ref|YP_022794.1| - 1.3e-46 159.0 0.0 1.6e-46 158.7 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Orn_DAP_Arg_deC PF00278.22 gi|48477088|ref|YP_022794.1| - 9.8e-19 67.4 0.0 2.3e-18 66.3 0.0 1.3 1 1 0 1 1 1 1 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Pallilysin PF18663.1 gi|48477088|ref|YP_022794.1| - 0.48 10.4 2.0 3.4 7.7 0.3 2.4 2 0 0 2 2 2 0 Pallilysin beta barrel domain NLPC_P60 PF00877.19 gi|48477089|ref|YP_022795.1| - 2.2e-22 79.1 0.1 3.4e-22 78.4 0.1 1.3 1 0 0 1 1 1 1 NlpC/P60 family SH3_16 PF18348.1 gi|48477089|ref|YP_022795.1| - 0.00028 20.6 0.0 0.00048 19.9 0.0 1.4 1 0 0 1 1 1 1 Bacterial dipeptidyl-peptidase Sh3 domain SH3_3 PF08239.11 gi|48477089|ref|YP_022795.1| - 0.02 15.2 0.0 0.046 14.0 0.0 1.6 1 0 0 1 1 1 0 Bacterial SH3 domain SBP_bac_5 PF00496.22 gi|48477090|ref|YP_022796.1| - 2.7e-47 161.6 2.1 3.2e-46 158.0 1.9 2.2 2 0 0 2 2 2 1 Bacterial extracellular solute-binding proteins, family 5 Middle Big_1 PF02369.16 gi|48477090|ref|YP_022796.1| - 0.0068 16.4 7.9 0.096 12.7 0.1 4.7 5 0 0 5 5 5 1 Bacterial Ig-like domain (group 1) Invasin_D3 PF09134.10 gi|48477090|ref|YP_022796.1| - 1.1 9.7 4.6 1.1 9.6 0.2 3.1 2 1 0 2 2 2 0 Invasin, domain 3 Beta-lactamase PF00144.24 gi|48477091|ref|YP_022797.1| - 4.4e-40 137.9 0.0 6.3e-40 137.4 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase Glyco_hydro_3 PF00933.21 gi|48477092|ref|YP_022798.1| - 6.3e-60 203.2 0.0 8.6e-60 202.8 0.0 1.1 1 0 0 1 1 1 1 Glycosyl hydrolase family 3 N terminal domain RMMBL PF07521.12 gi|48477092|ref|YP_022798.1| - 0.0029 17.5 0.0 0.0076 16.2 0.0 1.7 1 0 0 1 1 1 1 Zn-dependent metallo-hydrolase RNA specificity domain MR_MLE_C PF13378.6 gi|48477093|ref|YP_022799.1| - 5.1e-44 150.4 0.0 7e-44 150.0 0.0 1.1 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|48477093|ref|YP_022799.1| - 1.3e-12 47.9 0.0 2.8e-12 46.9 0.0 1.5 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain MAAL_C PF07476.11 gi|48477093|ref|YP_022799.1| - 0.00028 20.2 0.2 0.00061 19.0 0.1 1.6 2 0 0 2 2 2 1 Methylaspartate ammonia-lyase C-terminus Enolase_C PF00113.22 gi|48477093|ref|YP_022799.1| - 0.0014 18.0 0.3 0.0023 17.2 0.3 1.4 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain SOR_SNZ PF01680.17 gi|48477093|ref|YP_022799.1| - 0.024 14.4 0.1 1.4 8.6 0.0 2.2 2 0 0 2 2 2 0 SOR/SNZ family DUF1343 PF07075.11 gi|48477094|ref|YP_022800.1| - 7.5e-121 403.8 0.0 8.5e-121 403.6 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1343) DUF218 PF02698.17 gi|48477095|ref|YP_022801.1| - 1.2e-19 70.6 0.0 1.4e-19 70.4 0.0 1.1 1 0 0 1 1 1 1 DUF218 domain Coat_F PF07875.12 gi|48477096|ref|YP_022802.1| - 0.86 9.9 3.7 1.4 9.2 0.4 2.9 2 2 1 3 3 3 0 Coat F domain DUF998 PF06197.13 gi|48477098|ref|YP_022804.1| - 0.012 15.2 6.8 0.017 14.7 6.8 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF998) McrBC PF10117.9 gi|48477099|ref|YP_022805.1| - 3.4e-21 75.7 0.9 3.9e-21 75.5 0.9 1.0 1 0 0 1 1 1 1 McrBC 5-methylcytosine restriction system component PDDEXK_7 PF04411.12 gi|48477099|ref|YP_022805.1| - 4e-05 23.7 0.2 6e-05 23.1 0.2 1.2 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily AAA_5 PF07728.14 gi|48477100|ref|YP_022806.1| - 1e-17 64.4 0.0 4.6e-13 49.4 0.0 2.4 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) DUF3578 PF12102.8 gi|48477100|ref|YP_022806.1| - 1.8e-09 37.4 9.9 2.4e-09 37.0 6.8 2.6 2 1 0 2 2 2 1 Domain of unknown function (DUF3578) AAA PF00004.29 gi|48477100|ref|YP_022806.1| - 2.9e-05 24.5 0.3 0.00026 21.4 0.3 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.21 gi|48477100|ref|YP_022806.1| - 0.0011 18.4 0.0 0.0018 17.7 0.0 1.2 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_22 PF13401.6 gi|48477100|ref|YP_022806.1| - 0.0028 17.9 0.0 0.0076 16.5 0.0 1.7 1 1 0 1 1 1 1 AAA domain TsaE PF02367.17 gi|48477100|ref|YP_022806.1| - 0.0064 16.5 0.1 0.021 14.8 0.0 1.8 2 0 0 2 2 2 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE RuvB_N PF05496.12 gi|48477100|ref|YP_022806.1| - 0.035 13.8 0.0 0.38 10.5 0.0 2.1 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|48477100|ref|YP_022806.1| - 0.055 13.9 0.0 0.12 12.8 0.0 1.6 1 1 0 1 1 1 0 AAA ATPase domain AAA_19 PF13245.6 gi|48477100|ref|YP_022806.1| - 0.062 13.6 0.1 0.54 10.6 0.1 2.1 1 1 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 gi|48477100|ref|YP_022806.1| - 0.1 12.3 0.0 0.23 11.2 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein MinE PF03776.14 gi|48477100|ref|YP_022806.1| - 0.18 11.8 0.5 0.4 10.7 0.5 1.6 1 0 0 1 1 1 0 Septum formation topological specificity factor MinE Peptidase_M76 PF09768.9 gi|48477101|ref|YP_022807.1| - 0.0003 20.6 0.2 0.00052 19.8 0.1 1.4 1 1 0 1 1 1 1 Peptidase M76 family DA1-like PF12315.8 gi|48477101|ref|YP_022807.1| - 0.019 14.3 0.0 0.033 13.6 0.0 1.3 1 0 0 1 1 1 0 Protein DA1 RST PF12174.8 gi|48477101|ref|YP_022807.1| - 0.052 13.5 0.6 3.7 7.5 0.2 2.5 2 0 0 2 2 2 0 RCD1-SRO-TAF4 (RST) plant domain DUF2075 PF09848.9 gi|48477103|ref|YP_022809.1| - 0.00053 19.3 0.0 0.00056 19.2 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) NERD PF08378.11 gi|48477104|ref|YP_022810.1| - 0.061 13.8 0.2 0.12 12.9 0.1 1.5 1 1 0 1 1 1 0 Nuclease-related domain AbiEi_4 PF13338.6 gi|48477105|ref|YP_022811.1| - 3.8e-05 23.7 0.0 6.2e-05 23.1 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator, AbiEi antitoxin DUF771 PF05595.11 gi|48477105|ref|YP_022811.1| - 0.03 14.3 2.1 0.078 13.0 0.2 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF771) HTH_3 PF01381.22 gi|48477105|ref|YP_022811.1| - 0.13 12.3 0.3 3.6 7.7 0.4 2.5 1 1 0 1 1 1 0 Helix-turn-helix AbiEii PF08843.11 gi|48477106|ref|YP_022812.1| - 1e-35 123.9 0.0 1.2e-35 123.6 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase AbiEii toxin, Type IV TA system MFS_1 PF07690.16 gi|48477107|ref|YP_022813.1| - 2.4e-06 26.7 7.3 2.9e-06 26.4 7.3 1.0 1 0 0 1 1 1 1 Major Facilitator Superfamily LacY_symp PF01306.19 gi|48477107|ref|YP_022813.1| - 2.6e-05 23.2 5.3 2.8e-05 23.1 5.3 1.0 1 0 0 1 1 1 1 LacY proton/sugar symporter MFS_1_like PF12832.7 gi|48477107|ref|YP_022813.1| - 9.9e-05 21.4 4.2 0.00011 21.2 4.2 1.0 1 0 0 1 1 1 1 MFS_1 like family Sugar_tr PF00083.24 gi|48477107|ref|YP_022813.1| - 0.0029 16.5 2.1 0.0029 16.5 2.1 1.1 1 0 0 1 1 1 1 Sugar (and other) transporter YpmT PF17431.2 gi|48477107|ref|YP_022813.1| - 0.44 10.6 8.1 0.1 12.7 2.9 2.4 1 1 1 2 2 2 0 Uncharacterized YmpT-like Methyltransf_11 PF08241.12 gi|48477108|ref|YP_022814.1| - 3.2e-14 53.3 0.0 5.6e-14 52.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|48477108|ref|YP_022814.1| - 4e-09 37.1 0.0 6.4e-09 36.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|48477108|ref|YP_022814.1| - 1.5e-07 31.4 0.0 1.9e-07 31.0 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.12 gi|48477108|ref|YP_022814.1| - 3.2e-05 23.6 0.0 4.6e-05 23.1 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_31 PF13847.6 gi|48477108|ref|YP_022814.1| - 3.7e-05 23.6 0.0 4.7e-05 23.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|48477108|ref|YP_022814.1| - 0.0016 19.2 0.0 0.0086 16.8 0.0 2.1 1 1 1 2 2 2 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|48477108|ref|YP_022814.1| - 0.0029 17.0 0.1 0.0055 16.1 0.1 1.6 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family SSXT PF05030.12 gi|48477108|ref|YP_022814.1| - 0.065 12.9 0.0 0.11 12.2 0.0 1.3 1 0 0 1 1 1 0 SSXT protein (N-terminal region) Polysacc_deac_1 PF01522.21 gi|48477108|ref|YP_022814.1| - 0.12 12.2 0.0 0.25 11.2 0.0 1.4 1 1 0 1 1 1 0 Polysaccharide deacetylase AA_permease_2 PF13520.6 gi|48477109|ref|YP_022815.1| - 2.3e-19 69.6 19.8 2.7e-19 69.3 19.8 1.0 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|48477109|ref|YP_022815.1| - 2.1e-17 62.9 18.4 2.7e-17 62.5 18.4 1.1 1 0 0 1 1 1 1 Amino acid permease Spore_permease PF03845.13 gi|48477109|ref|YP_022815.1| - 0.0014 17.5 10.4 0.0017 17.3 10.4 1.0 1 0 0 1 1 1 1 Spore germination protein DUF2157 PF09925.9 gi|48477109|ref|YP_022815.1| - 2.1 8.2 6.1 1.1 9.0 3.7 1.8 2 1 0 2 2 2 0 Predicted membrane protein (DUF2157) SurA_N_3 PF13624.6 gi|48477109|ref|YP_022815.1| - 5.5 6.8 6.6 3.5 7.4 2.4 2.2 2 0 0 2 2 2 0 SurA N-terminal domain Pox_A14 PF05767.12 gi|48477109|ref|YP_022815.1| - 5.7 7.2 13.8 0.45 10.7 0.7 2.5 1 1 1 2 2 2 0 Poxvirus virion envelope protein A14 AA_permease_2 PF13520.6 gi|48477110|ref|YP_022816.1| - 1.8e-11 43.5 6.5 2e-11 43.4 6.5 1.0 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|48477110|ref|YP_022816.1| - 5.7e-09 35.1 6.1 6.8e-09 34.8 6.1 1.0 1 0 0 1 1 1 1 Amino acid permease CbiJ PF02571.14 gi|48477111|ref|YP_022817.1| - 6.4e-40 137.1 0.0 8.5e-40 136.7 0.0 1.2 1 0 0 1 1 1 1 Precorrin-6x reductase CbiJ/CobK CbiC PF02570.15 gi|48477112|ref|YP_022818.1| - 3.5e-25 88.8 0.5 4.5e-25 88.5 0.5 1.1 1 0 0 1 1 1 1 Precorrin-8X methylmutase CbiD PF01888.17 gi|48477113|ref|YP_022819.1| - 1.5e-18 67.0 0.1 1.9e-18 66.7 0.1 1.0 1 0 0 1 1 1 1 CbiD GD_AH_C PF04295.13 gi|48477115|ref|YP_022821.1| - 8.3e-144 479.2 0.3 9.3e-144 479.0 0.3 1.0 1 0 0 1 1 1 1 D-galactarate dehydratase / Altronate hydrolase, C terminus SAF PF08666.12 gi|48477116|ref|YP_022822.1| - 5.1e-19 68.7 0.4 1.4e-18 67.3 0.4 1.7 1 1 0 1 1 1 1 SAF domain Polbeta PF18765.1 gi|48477117|ref|YP_022823.1| - 4.1e-08 33.2 0.1 5.4e-08 32.8 0.1 1.1 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 gi|48477117|ref|YP_022823.1| - 3.2e-07 30.5 0.0 3.7e-07 30.3 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyltransferase domain HORMA PF02301.18 gi|48477119|ref|YP_022825.1| - 0.021 14.4 2.9 0.018 14.6 1.3 1.6 1 1 1 2 2 2 0 HORMA domain CRISPR_Cas2 PF09827.9 gi|48477120|ref|YP_022826.1| - 4.1e-19 68.5 2.9 4.8e-19 68.3 2.9 1.1 1 0 0 1 1 1 1 CRISPR associated protein Cas2 Cas_Cas2CT1978 PF09707.10 gi|48477120|ref|YP_022826.1| - 0.049 13.7 0.0 0.052 13.6 0.0 1.1 1 0 0 1 1 1 0 CRISPR-associated protein (Cas_Cas2CT1978) Cas_Cas1 PF01867.16 gi|48477121|ref|YP_022827.1| - 8.3e-76 254.8 0.2 9.7e-76 254.6 0.2 1.0 1 0 0 1 1 1 1 CRISPR associated protein Cas1 RAMPs PF03787.15 gi|48477122|ref|YP_022828.1| - 3.1e-19 69.9 1.7 8.4e-19 68.5 1.7 1.9 1 1 0 1 1 1 1 RAMP superfamily W2 PF02020.18 gi|48477122|ref|YP_022828.1| - 0.34 11.1 1.3 0.63 10.2 0.1 2.0 2 0 0 2 2 2 0 eIF4-gamma/eIF5/eIF2-epsilon Csm4_C PF17953.1 gi|48477123|ref|YP_022829.1| - 0.05 13.5 0.0 0.3 11.0 0.0 2.3 1 1 0 1 1 1 0 CRISPR Csm4 C-terminal domain RAMPs PF03787.15 gi|48477124|ref|YP_022830.1| - 6.1e-17 62.4 3.9 8.5e-17 61.9 3.9 1.2 1 0 0 1 1 1 1 RAMP superfamily Csm1_B PF18211.1 gi|48477125|ref|YP_022831.1| - 9.5e-14 51.0 0.4 1.4e-12 47.2 0.1 2.6 2 0 0 2 2 2 1 Csm1 subunit domain B HD PF01966.22 gi|48477125|ref|YP_022831.1| - 4e-08 33.5 0.8 1.2e-07 32.0 0.8 1.8 1 0 0 1 1 1 1 HD domain mCpol PF18182.1 gi|48477125|ref|YP_022831.1| - 1.7e-07 31.6 9.2 0.00071 19.9 0.6 3.9 3 0 0 3 3 3 3 minimal CRISPR polymerase domain VraX PF17412.2 gi|48477125|ref|YP_022831.1| - 0.06 13.0 1.5 0.54 9.9 0.1 3.3 2 0 0 2 2 2 0 Family of unknown function HD_6 PF18019.1 gi|48477125|ref|YP_022831.1| - 0.064 13.4 0.1 0.22 11.6 0.1 1.9 2 0 0 2 2 2 0 HD domain Cas_Cas6 PF01881.16 gi|48477126|ref|YP_022832.1| - 6.4e-25 88.4 6.0 1.1e-24 87.7 6.0 1.4 1 0 0 1 1 1 1 CRISPR associated protein Cas6 ASFV_L11L PF05293.11 gi|48477127|ref|YP_022833.1| - 0.3 11.4 7.8 0.69 10.3 7.8 1.7 1 0 0 1 1 1 0 African swine fever virus (ASFV) L11L protein Cas_NE0113 PF09623.10 gi|48477128|ref|YP_022834.1| - 4.8e-11 42.8 0.3 1.2e-10 41.4 0.3 1.7 1 1 0 1 1 1 1 CRISPR-associated protein NE0113 (Cas_NE0113) Cas_APE2256 PF09651.10 gi|48477128|ref|YP_022834.1| - 0.00088 19.2 0.1 0.0019 18.1 0.1 1.6 1 1 0 1 1 1 1 CRISPR-associated protein (Cas_APE2256) DUF370 PF04025.12 gi|48477128|ref|YP_022834.1| - 0.19 11.8 6.6 0.08 13.1 0.9 2.7 2 1 1 3 3 3 0 Domain of unknown function (DUF370) PTSIIB_sorb PF03830.15 gi|48477130|ref|YP_022836.1| - 0.1 12.8 0.1 0.65 10.2 0.0 2.2 1 1 0 2 2 2 0 PTS system sorbose subfamily IIB component Methyltransf_25 PF13649.6 gi|48477131|ref|YP_022837.1| - 1.9e-09 38.1 0.0 2.6e-09 37.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|48477131|ref|YP_022837.1| - 5e-09 36.7 0.0 7.3e-09 36.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|48477131|ref|YP_022837.1| - 7.5e-05 23.4 0.0 0.0001 23.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|48477131|ref|YP_022837.1| - 0.00093 19.1 0.0 0.0011 18.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|48477131|ref|YP_022837.1| - 0.0012 18.3 0.1 0.0014 18.0 0.1 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_31 PF13847.6 gi|48477131|ref|YP_022837.1| - 0.003 17.4 0.1 0.009 15.8 0.1 1.9 1 1 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 gi|48477131|ref|YP_022837.1| - 0.0054 16.1 0.0 0.0064 15.8 0.0 1.3 1 1 0 1 1 1 1 Mycolic acid cyclopropane synthetase MetW PF07021.12 gi|48477131|ref|YP_022837.1| - 0.011 15.3 0.1 0.027 14.1 0.1 1.6 1 1 0 1 1 1 0 Methionine biosynthesis protein MetW MTS PF05175.14 gi|48477131|ref|YP_022837.1| - 0.059 12.9 0.0 0.078 12.5 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase small domain Phage_mat-A PF03863.13 gi|48477131|ref|YP_022837.1| - 0.06 12.3 0.1 0.066 12.1 0.1 1.1 1 0 0 1 1 1 0 Phage maturation protein ATPase_2 PF01637.18 gi|48477132|ref|YP_022838.1| - 2.9e-22 79.7 2.5 2.9e-22 79.7 2.5 1.8 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea AAA_14 PF13173.6 gi|48477132|ref|YP_022838.1| - 1.2e-09 38.3 7.8 5.9e-08 32.8 2.4 3.2 2 1 0 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|48477132|ref|YP_022838.1| - 1.2e-06 28.8 0.0 2.7e-06 27.7 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|48477132|ref|YP_022838.1| - 8.3e-06 26.3 0.0 1.5e-05 25.5 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA_35 PF14516.6 gi|48477132|ref|YP_022838.1| - 1.3e-05 24.2 0.0 2.7e-05 23.2 0.0 1.4 1 1 0 1 1 1 1 AAA-like domain AAA PF00004.29 gi|48477132|ref|YP_022838.1| - 0.0037 17.7 0.0 0.012 16.1 0.0 1.9 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) PaREP1 PF05942.11 gi|48477133|ref|YP_022839.1| - 0.00025 21.0 0.1 0.00031 20.7 0.1 1.2 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family Peptidase_M73 PF12389.8 gi|48477134|ref|YP_022840.1| - 0.029 14.2 0.7 0.1 12.4 0.0 2.1 3 0 0 3 3 3 0 Camelysin metallo-endopeptidase Arc_trans_TRASH PF08394.10 gi|48477135|ref|YP_022841.1| - 1e-19 70.6 8.2 2.1e-19 69.5 8.2 1.6 1 0 0 1 1 1 1 Archaeal TRASH domain HTH_24 PF13412.6 gi|48477135|ref|YP_022841.1| - 3e-08 33.1 2.6 4.9e-08 32.4 2.6 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_23 PF13384.6 gi|48477135|ref|YP_022841.1| - 1.6e-07 30.9 0.1 2.7e-07 30.2 0.1 1.3 1 0 0 1 1 1 1 Homeodomain-like domain TrmB PF01978.19 gi|48477135|ref|YP_022841.1| - 3.2e-07 30.1 0.3 5.8e-07 29.3 0.3 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|48477135|ref|YP_022841.1| - 9.8e-07 28.6 0.1 1.6e-06 27.9 0.1 1.3 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|48477135|ref|YP_022841.1| - 5e-06 26.3 0.0 7.5e-06 25.7 0.0 1.3 1 0 0 1 1 1 1 MarR family Sigma70_r4 PF04545.16 gi|48477135|ref|YP_022841.1| - 5.1e-06 25.9 0.1 8.2e-06 25.3 0.1 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_AsnC-type PF13404.6 gi|48477135|ref|YP_022841.1| - 1.2e-05 25.0 0.3 2.1e-05 24.2 0.3 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain GerE PF00196.19 gi|48477135|ref|YP_022841.1| - 2.2e-05 23.9 0.5 3.9e-05 23.1 0.5 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_11 PF08279.12 gi|48477135|ref|YP_022841.1| - 2.3e-05 24.2 0.2 3.9e-05 23.5 0.2 1.5 1 0 0 1 1 1 1 HTH domain HTH_Mga PF08280.11 gi|48477135|ref|YP_022841.1| - 3.2e-05 23.9 0.7 5.2e-05 23.2 0.1 1.6 2 0 0 2 2 1 1 M protein trans-acting positive regulator (MGA) HTH domain YHS PF04945.13 gi|48477135|ref|YP_022841.1| - 4.5e-05 23.5 3.8 8.5e-05 22.6 3.8 1.4 1 0 0 1 1 1 1 YHS domain HTH_5 PF01022.20 gi|48477135|ref|YP_022841.1| - 0.00025 20.9 0.4 0.00045 20.0 0.4 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Mga PF05043.13 gi|48477135|ref|YP_022841.1| - 0.0006 20.3 0.1 0.0012 19.4 0.1 1.4 1 0 0 1 1 1 1 Mga helix-turn-helix domain TFIIE_alpha PF02002.17 gi|48477135|ref|YP_022841.1| - 0.00066 19.5 0.8 0.0012 18.7 0.8 1.4 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_20 PF12840.7 gi|48477135|ref|YP_022841.1| - 0.00072 19.6 0.0 0.001 19.0 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_29 PF13551.6 gi|48477135|ref|YP_022841.1| - 0.0008 19.4 0.1 0.0016 18.4 0.0 1.5 2 0 0 2 2 1 1 Winged helix-turn helix HTH_38 PF13936.6 gi|48477135|ref|YP_022841.1| - 0.00091 18.9 1.1 0.0015 18.3 1.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Zn_ribbon_recom PF13408.6 gi|48477135|ref|YP_022841.1| - 0.0027 18.2 8.0 0.013 16.0 5.4 2.4 2 0 0 2 2 2 1 Recombinase zinc beta ribbon domain HTH_7 PF02796.15 gi|48477135|ref|YP_022841.1| - 0.0028 17.7 0.1 0.009 16.1 0.1 1.8 2 0 0 2 2 1 1 Helix-turn-helix domain of resolvase Penicillinase_R PF03965.16 gi|48477135|ref|YP_022841.1| - 0.0041 17.5 0.0 0.0072 16.7 0.0 1.4 1 0 0 1 1 1 1 Penicillinase repressor HTH_10 PF04967.12 gi|48477135|ref|YP_022841.1| - 0.0048 16.7 0.0 0.0084 15.9 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain HTH_IclR PF09339.10 gi|48477135|ref|YP_022841.1| - 0.0058 16.4 0.0 0.0096 15.7 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain UPF0122 PF04297.14 gi|48477135|ref|YP_022841.1| - 0.0078 16.4 0.2 0.012 15.8 0.2 1.4 1 0 0 1 1 1 1 Putative helix-turn-helix protein, YlxM / p13 like HTH_30 PF13556.6 gi|48477135|ref|YP_022841.1| - 0.0083 15.9 0.0 0.016 15.0 0.0 1.5 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain NUMOD1 PF07453.13 gi|48477135|ref|YP_022841.1| - 0.0087 16.3 1.7 0.014 15.7 0.5 2.0 2 0 0 2 2 1 1 NUMOD1 domain Sigma70_r4_2 PF08281.12 gi|48477135|ref|YP_022841.1| - 0.009 15.7 0.0 0.015 14.9 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_9 PF08221.11 gi|48477135|ref|YP_022841.1| - 0.012 15.7 0.5 0.02 15.0 0.5 1.3 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain zf-FCS PF06467.14 gi|48477135|ref|YP_022841.1| - 0.013 15.4 8.2 0.023 14.7 8.2 1.4 1 0 0 1 1 1 0 MYM-type Zinc finger with FCS sequence motif PCI PF01399.27 gi|48477135|ref|YP_022841.1| - 0.013 16.0 0.0 0.029 14.9 0.0 1.6 1 0 0 1 1 1 0 PCI domain TnsD PF15978.5 gi|48477135|ref|YP_022841.1| - 0.013 14.5 0.1 0.013 14.5 0.1 2.0 2 0 0 2 2 2 0 Tn7-like transposition protein D HTH_WhiA PF02650.14 gi|48477135|ref|YP_022841.1| - 0.014 15.7 0.9 0.027 14.8 0.9 1.4 1 0 0 1 1 1 0 WhiA C-terminal HTH domain HTH_28 PF13518.6 gi|48477135|ref|YP_022841.1| - 0.014 15.5 0.0 0.024 14.8 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain SMC_ScpB PF04079.16 gi|48477135|ref|YP_022841.1| - 0.016 14.8 0.0 0.024 14.2 0.0 1.2 1 0 0 1 1 1 0 Segregation and condensation complex subunit ScpB HTH_27 PF13463.6 gi|48477135|ref|YP_022841.1| - 0.018 15.5 0.2 0.055 14.0 0.1 1.8 2 0 0 2 2 1 0 Winged helix DNA-binding domain HTH_Tnp_ISL3 PF13542.6 gi|48477135|ref|YP_022841.1| - 0.019 14.3 0.0 0.039 13.4 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_Crp_2 PF13545.6 gi|48477135|ref|YP_022841.1| - 0.023 14.7 0.0 0.039 13.9 0.0 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_19 PF12844.7 gi|48477135|ref|YP_022841.1| - 0.032 14.2 0.3 0.068 13.2 0.3 1.7 1 1 0 1 1 1 0 Helix-turn-helix domain Fe_dep_repress PF01325.19 gi|48477135|ref|YP_022841.1| - 0.032 14.4 0.0 0.056 13.6 0.0 1.3 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain GntR PF00392.21 gi|48477135|ref|YP_022841.1| - 0.033 13.8 0.0 0.065 12.9 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_17 PF12728.7 gi|48477135|ref|YP_022841.1| - 0.04 14.1 0.1 0.17 12.1 0.0 2.1 2 0 0 2 2 1 0 Helix-turn-helix domain HTH_3 PF01381.22 gi|48477135|ref|YP_022841.1| - 0.043 13.9 0.0 0.09 12.8 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix Rrf2 PF02082.20 gi|48477135|ref|YP_022841.1| - 0.045 14.1 0.0 0.075 13.4 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator HTH_26 PF13443.6 gi|48477135|ref|YP_022841.1| - 0.053 14.0 0.4 0.46 10.9 0.1 2.2 2 0 0 2 2 2 0 Cro/C1-type HTH DNA-binding domain DpnI PF06044.12 gi|48477135|ref|YP_022841.1| - 0.056 13.1 0.5 0.084 12.5 0.5 1.3 1 0 0 1 1 1 0 Dam-replacing family HTH_22 PF13309.6 gi|48477135|ref|YP_022841.1| - 0.064 13.3 0.0 0.11 12.6 0.0 1.4 1 0 0 1 1 1 0 HTH domain HTH_Tnp_Tc3_1 PF11427.8 gi|48477135|ref|YP_022841.1| - 0.064 13.1 2.8 0.076 12.9 0.9 2.0 2 0 0 2 2 2 0 Tc3 transposase HTH_6 PF01418.17 gi|48477135|ref|YP_022841.1| - 0.07 13.1 0.2 0.12 12.3 0.2 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain, rpiR family C1_1 PF00130.22 gi|48477135|ref|YP_022841.1| - 0.083 12.8 2.5 0.15 12.0 2.5 1.3 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) HTH_Tnp_1_2 PF13022.6 gi|48477135|ref|YP_022841.1| - 0.1 12.8 0.0 0.15 12.2 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix of insertion element transposase HTH_36 PF13730.6 gi|48477135|ref|YP_022841.1| - 0.11 12.5 0.5 0.21 11.6 0.5 1.6 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_DeoR PF08220.12 gi|48477135|ref|YP_022841.1| - 0.11 12.3 0.0 0.2 11.4 0.0 1.4 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_8 PF02954.19 gi|48477135|ref|YP_022841.1| - 0.11 12.3 0.1 0.16 11.8 0.1 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family TerB_C PF15615.6 gi|48477135|ref|YP_022841.1| - 0.14 12.5 0.1 0.18 12.1 0.1 1.1 1 0 0 1 1 1 0 TerB-C domain zf-ribbon_3 PF13248.6 gi|48477135|ref|YP_022841.1| - 0.27 10.7 4.1 1.1 8.7 0.1 2.6 3 0 0 3 3 2 0 zinc-ribbon domain FeoC PF09012.10 gi|48477135|ref|YP_022841.1| - 0.3 11.2 0.0 0.3 11.2 0.0 2.2 2 1 1 3 3 1 0 FeoC like transcriptional regulator DUF3268 PF11672.8 gi|48477135|ref|YP_022841.1| - 0.46 10.8 5.8 0.78 10.1 5.8 1.3 1 0 0 1 1 1 0 zinc-finger-containing domain MFS_1 PF07690.16 gi|48477136|ref|YP_022842.1| - 2.1e-25 89.4 92.2 5.6e-20 71.6 54.5 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.6 gi|48477136|ref|YP_022842.1| - 1.1e-10 40.7 47.5 3e-10 39.2 47.5 1.6 1 1 0 1 1 1 1 MFS/sugar transport protein MFS_3 PF05977.13 gi|48477136|ref|YP_022842.1| - 6.5 5.0 9.7 0.31 9.4 1.2 2.0 2 0 0 2 2 2 0 Transmembrane secretion effector MFS_1 PF07690.16 gi|48477137|ref|YP_022843.1| - 2.5e-25 89.2 72.4 2.8e-17 62.7 34.6 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.6 gi|48477137|ref|YP_022843.1| - 3.1e-12 45.8 43.1 4.6e-12 45.2 43.1 1.2 1 0 0 1 1 1 1 MFS/sugar transport protein MFS_3 PF05977.13 gi|48477137|ref|YP_022843.1| - 0.2 10.0 19.4 0.35 9.2 19.4 1.4 1 1 0 1 1 1 0 Transmembrane secretion effector MFS_1_like PF12832.7 gi|48477137|ref|YP_022843.1| - 1.1 8.0 37.7 0.75 8.6 33.5 2.4 1 1 1 2 2 2 0 MFS_1 like family CBM_48 PF02922.18 gi|48477139|ref|YP_022845.1| - 3.2e-22 78.7 0.0 1.4e-19 70.2 0.0 2.9 2 0 0 2 2 2 2 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Alpha-amylase_C PF02806.18 gi|48477139|ref|YP_022845.1| - 5.1e-19 68.5 0.1 1.6e-18 67.0 0.0 1.9 2 0 0 2 2 2 1 Alpha amylase, C-terminal all-beta domain Alpha-amylase PF00128.24 gi|48477139|ref|YP_022845.1| - 1.2e-15 57.9 1.4 1.8e-10 40.9 0.3 2.6 1 1 1 2 2 2 2 Alpha amylase, catalytic domain VP4_helical PF17478.2 gi|48477139|ref|YP_022845.1| - 0.19 11.1 0.3 0.38 10.1 0.3 1.4 1 0 0 1 1 1 0 Rotavirus VP4 helical domain DUF3416 PF11896.8 gi|48477140|ref|YP_022846.1| - 4.1e-42 144.5 0.0 5.4e-42 144.1 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF3416) Alpha-amylase PF00128.24 gi|48477140|ref|YP_022846.1| - 4.2e-12 46.3 2.9 5.7e-10 39.3 0.0 2.7 2 1 1 3 3 3 2 Alpha amylase, catalytic domain Malt_amylase_C PF16657.5 gi|48477140|ref|YP_022846.1| - 2.1e-05 24.5 0.1 5.6e-05 23.2 0.1 1.8 1 0 0 1 1 1 1 Maltogenic Amylase, C-terminal domain hDGE_amylase PF14701.6 gi|48477140|ref|YP_022846.1| - 4.3e-05 22.8 3.6 0.024 13.7 0.0 2.9 3 0 0 3 3 3 2 Glycogen debranching enzyme, glucanotransferase domain Cyc-maltodext_C PF10438.9 gi|48477140|ref|YP_022846.1| - 0.0013 18.8 1.0 0.0013 18.8 1.0 2.5 2 1 1 3 3 3 1 Cyclo-malto-dextrinase C-terminal domain GHL6 PF14871.6 gi|48477140|ref|YP_022846.1| - 0.0018 18.4 0.0 0.0037 17.4 0.0 1.5 1 0 0 1 1 1 1 Hypothetical glycosyl hydrolase 6 RVT_2 PF07727.14 gi|48477140|ref|YP_022846.1| - 0.0029 17.3 2.3 0.13 11.9 0.2 2.4 2 0 0 2 2 2 2 Reverse transcriptase (RNA-dependent DNA polymerase) Alpha-amylase_C PF02806.18 gi|48477140|ref|YP_022846.1| - 0.025 15.0 0.1 0.077 13.5 0.1 1.8 1 0 0 1 1 1 0 Alpha amylase, C-terminal all-beta domain Alpha-amylase PF00128.24 gi|48477141|ref|YP_022847.1| - 4e-82 276.5 0.4 9.8e-82 275.2 0.4 1.6 1 1 0 1 1 1 1 Alpha amylase, catalytic domain Malt_amylase_C PF16657.5 gi|48477141|ref|YP_022847.1| - 5.1e-22 77.8 0.0 1.1e-21 76.7 0.0 1.6 1 0 0 1 1 1 1 Maltogenic Amylase, C-terminal domain hDGE_amylase PF14701.6 gi|48477141|ref|YP_022847.1| - 0.031 13.4 0.0 0.048 12.8 0.0 1.2 1 0 0 1 1 1 0 Glycogen debranching enzyme, glucanotransferase domain APH PF01636.23 gi|48477142|ref|YP_022848.1| - 0.019 14.9 0.0 0.029 14.3 0.0 1.3 1 0 0 1 1 1 0 Phosphotransferase enzyme family Mak_N_cap PF18085.1 gi|48477142|ref|YP_022848.1| - 0.26 12.4 0.0 0.42 11.7 0.0 1.3 1 0 0 1 1 1 0 Maltokinase N-terminal cap domain COX15-CtaA PF02628.15 gi|48477143|ref|YP_022849.1| - 0.055 12.5 7.8 0.23 10.5 3.7 2.0 1 1 1 2 2 2 0 Cytochrome oxidase assembly protein Ni_hydr_CYTB PF01292.20 gi|48477143|ref|YP_022849.1| - 1.7 8.2 14.4 0.13 11.9 3.2 2.2 1 1 0 2 2 2 0 Prokaryotic cytochrome b561 SLATT_5 PF18160.1 gi|48477143|ref|YP_022849.1| - 1.7 7.9 11.2 2.9 7.2 5.1 2.1 1 1 1 2 2 2 0 SMODS and SLOG-associating 2TM effector domain family 5 MFS_1 PF07690.16 gi|48477144|ref|YP_022850.1| - 3.1e-17 62.5 43.0 3.1e-17 62.5 43.0 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|48477144|ref|YP_022850.1| - 8e-12 44.8 33.7 2.6e-10 39.7 12.4 2.1 1 1 1 2 2 2 2 Sugar (and other) transporter MFS_2 PF13347.6 gi|48477144|ref|YP_022850.1| - 2.9e-05 22.8 31.5 3.3e-05 22.6 29.0 2.2 1 1 0 1 1 1 1 MFS/sugar transport protein MFS_1 PF07690.16 gi|48477145|ref|YP_022851.1| - 1.8e-26 93.0 64.1 1.1e-23 83.7 44.8 2.6 1 1 1 2 2 2 2 Major Facilitator Superfamily DUF3794 PF12673.7 gi|48477146|ref|YP_022852.1| - 1.1 9.6 3.7 1.4 9.2 3.6 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF3794) DUF45 PF01863.17 gi|48477147|ref|YP_022853.1| - 5.6e-34 118.0 5.9 1.6e-33 116.5 5.9 1.7 1 1 0 1 1 1 1 Protein of unknown function DUF45 WLM PF08325.10 gi|48477147|ref|YP_022853.1| - 0.042 13.9 0.3 0.074 13.1 0.3 1.4 1 0 0 1 1 1 0 WLM domain Peptidase_M91 PF14891.6 gi|48477147|ref|YP_022853.1| - 0.13 12.5 0.1 0.22 11.8 0.1 1.4 1 1 0 1 1 1 0 Effector protein SWI2_SNF2 PF18766.1 gi|48477148|ref|YP_022854.1| - 7.5e-58 195.8 0.8 7.5e-58 195.8 0.8 2.6 3 0 0 3 3 3 1 SWI2/SNF2 ATPase HSDR_N PF04313.14 gi|48477148|ref|YP_022854.1| - 3.9e-30 105.3 6.3 3.9e-30 105.3 6.3 4.4 3 1 0 3 3 3 1 Type I restriction enzyme R protein N terminus (HSDR_N) ResIII PF04851.15 gi|48477148|ref|YP_022854.1| - 4.8e-21 75.5 1.4 4.8e-21 75.5 1.4 3.2 2 1 1 3 3 3 1 Type III restriction enzyme, res subunit DEAD PF00270.29 gi|48477148|ref|YP_022854.1| - 0.00021 21.1 0.6 0.0029 17.4 0.0 2.6 2 1 1 3 3 3 1 DEAD/DEAH box helicase Latarcin PF10279.9 gi|48477148|ref|YP_022854.1| - 0.02 15.3 4.3 50 4.4 0.1 5.2 3 2 0 3 3 3 0 Latarcin precursor AAA_22 PF13401.6 gi|48477148|ref|YP_022854.1| - 0.064 13.5 0.0 0.29 11.4 0.0 2.1 1 0 0 1 1 1 0 AAA domain Methylase_S PF01420.19 gi|48477149|ref|YP_022855.1| - 2.1e-46 158.2 14.2 9.9e-31 107.2 5.9 2.4 2 1 0 2 2 2 2 Type I restriction modification DNA specificity domain MerR-DNA-bind PF09278.11 gi|48477149|ref|YP_022855.1| - 0.083 13.4 0.2 11 6.6 0.0 2.5 2 0 0 2 2 2 0 MerR, DNA binding N6_Mtase PF02384.16 gi|48477150|ref|YP_022856.1| - 1.8e-102 342.8 2.7 3e-102 342.1 2.7 1.4 1 0 0 1 1 1 1 N-6 DNA Methylase HsdM_N PF12161.8 gi|48477150|ref|YP_022856.1| - 8.8e-21 75.0 6.5 8.8e-21 75.0 6.5 3.6 4 0 0 4 4 4 1 HsdM N-terminal domain UPF0020 PF01170.18 gi|48477150|ref|YP_022856.1| - 1.6e-06 27.9 0.1 2.2e-05 24.2 0.0 2.6 2 1 0 2 2 2 1 Putative RNA methylase family UPF0020 Methyltransf_15 PF09445.10 gi|48477150|ref|YP_022856.1| - 0.017 14.7 1.6 0.032 13.8 0.2 2.2 2 0 0 2 2 2 0 RNA cap guanine-N2 methyltransferase Penicillinase_R PF03965.16 gi|48477150|ref|YP_022856.1| - 0.019 15.3 0.1 0.061 13.7 0.1 1.9 1 0 0 1 1 1 0 Penicillinase repressor MarR PF01047.22 gi|48477150|ref|YP_022856.1| - 0.044 13.7 0.0 0.12 12.4 0.0 1.7 1 0 0 1 1 1 0 MarR family MTS PF05175.14 gi|48477150|ref|YP_022856.1| - 0.047 13.2 0.0 0.11 12.0 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase small domain Methyltransf_31 PF13847.6 gi|48477150|ref|YP_022856.1| - 0.29 10.9 0.0 0.29 10.9 0.0 2.4 3 1 0 3 3 3 0 Methyltransferase domain Eco57I PF07669.11 gi|48477150|ref|YP_022856.1| - 0.45 11.1 4.2 2.6 8.6 0.2 3.6 3 1 0 3 3 3 0 Eco57I restriction-modification methylase Ribosomal_L18_c PF14204.6 gi|48477150|ref|YP_022856.1| - 0.63 11.0 4.7 4.2 8.4 0.0 3.3 3 0 0 3 3 3 0 Ribosomal L18 C-terminal region VHS PF00790.19 gi|48477150|ref|YP_022856.1| - 1.3 8.9 14.2 0.14 12.0 1.6 3.6 3 1 1 4 4 4 0 VHS domain ChaB PF06150.12 gi|48477150|ref|YP_022856.1| - 1.8 9.2 7.3 0.19 12.3 0.8 2.6 3 0 0 3 3 3 0 ChaB MutS_III PF05192.18 gi|48477150|ref|YP_022856.1| - 8.1 6.6 6.1 2.3 8.4 2.4 2.0 2 0 0 2 2 2 0 MutS domain III DUF262 PF03235.14 gi|48477151|ref|YP_022857.1| - 1.9e-05 24.9 0.1 2.4e-05 24.6 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF262 HEPN PF05168.14 gi|48477152|ref|YP_022858.1| - 1.1e-08 35.2 0.5 2.3e-08 34.2 0.2 1.8 2 0 0 2 2 2 1 HEPN domain HEPN_AbiV PF18728.1 gi|48477152|ref|YP_022858.1| - 0.016 15.4 0.6 0.027 14.6 0.6 1.5 1 1 0 1 1 1 0 AbiV PRD PF00874.20 gi|48477152|ref|YP_022858.1| - 1.3 9.3 14.0 2.1 8.7 0.3 4.0 3 1 0 4 4 4 0 PRD domain Exo70 PF03081.15 gi|48477153|ref|YP_022859.1| - 0.0023 17.0 0.0 0.0028 16.8 0.0 1.1 1 0 0 1 1 1 1 Exo70 exocyst complex subunit HTH_5 PF01022.20 gi|48477154|ref|YP_022860.1| - 2.2e-10 40.2 0.5 3.6e-10 39.6 0.5 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|48477154|ref|YP_022860.1| - 5.1e-06 26.5 0.0 6.9e-06 26.0 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.19 gi|48477154|ref|YP_022860.1| - 0.00013 21.8 0.1 0.00082 19.2 0.1 1.9 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|48477154|ref|YP_022860.1| - 0.0006 19.3 0.9 0.0012 18.3 0.9 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_23 PF13384.6 gi|48477154|ref|YP_022860.1| - 0.011 15.5 0.0 0.16 11.8 0.0 2.3 1 1 1 2 2 2 0 Homeodomain-like domain MarR PF01047.22 gi|48477154|ref|YP_022860.1| - 0.012 15.5 0.0 0.024 14.6 0.0 1.5 1 0 0 1 1 1 0 MarR family HTH_28 PF13518.6 gi|48477154|ref|YP_022860.1| - 0.014 15.5 0.0 0.22 11.7 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain MarR_2 PF12802.7 gi|48477154|ref|YP_022860.1| - 0.018 14.9 0.0 0.045 13.6 0.0 1.6 2 0 0 2 2 2 0 MarR family HTH_38 PF13936.6 gi|48477154|ref|YP_022860.1| - 0.02 14.6 0.2 0.04 13.7 0.2 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_17 PF12728.7 gi|48477154|ref|YP_022860.1| - 0.046 13.9 0.2 12 6.2 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_11 PF08279.12 gi|48477154|ref|YP_022860.1| - 0.075 13.0 0.4 0.78 9.7 0.3 2.2 2 0 0 2 2 2 0 HTH domain ArsB PF02040.15 gi|48477155|ref|YP_022861.1| - 8.5e-114 381.1 41.8 1.1e-113 380.8 41.8 1.0 1 0 0 1 1 1 1 Arsenical pump membrane protein CitMHS PF03600.16 gi|48477155|ref|YP_022861.1| - 9.8e-17 61.1 43.6 9.8e-17 61.1 43.6 2.2 1 1 1 2 2 2 1 Citrate transporter DUF4233 PF14017.6 gi|48477155|ref|YP_022861.1| - 0.076 13.4 0.5 0.076 13.4 0.5 3.3 3 1 0 3 3 3 0 Protein of unknown function (DUF4233) Na_sulph_symp PF00939.19 gi|48477155|ref|YP_022861.1| - 0.7 8.9 38.8 0.0056 15.8 21.8 2.3 1 1 1 2 2 2 0 Sodium:sulfate symporter transmembrane region tRNA-synt_1e PF01406.19 gi|48477156|ref|YP_022862.1| - 1e-115 386.3 1.4 1e-115 386.3 1.4 1.7 2 0 0 2 2 2 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1g PF09334.11 gi|48477156|ref|YP_022862.1| - 1.9e-17 63.1 2.9 4.9e-10 38.7 0.3 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1 PF00133.22 gi|48477156|ref|YP_022862.1| - 1.4e-08 33.5 0.4 5.5e-05 21.6 0.0 2.9 2 1 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1f PF01921.18 gi|48477156|ref|YP_022862.1| - 6.4e-06 25.3 0.6 3.5e-05 22.9 0.2 2.1 2 0 0 2 2 2 1 tRNA synthetases class I (K) tRNA-synt_1d PF00750.19 gi|48477156|ref|YP_022862.1| - 0.0038 16.2 3.5 0.0041 16.1 0.0 2.5 2 2 2 4 4 4 1 tRNA synthetases class I (R) tRNA-synt_1c PF00749.21 gi|48477156|ref|YP_022862.1| - 0.025 13.5 0.5 0.025 13.5 0.5 3.1 3 1 1 4 4 4 0 tRNA synthetases class I (E and Q), catalytic domain Xpo1 PF08389.12 gi|48477156|ref|YP_022862.1| - 0.14 12.2 1.5 0.32 11.0 1.1 1.7 1 1 1 2 2 2 0 Exportin 1-like protein p450 PF00067.22 gi|48477157|ref|YP_022863.1| - 3.7e-36 124.9 0.4 1.1e-30 106.8 0.5 3.0 1 1 1 2 2 2 2 Cytochrome P450 Sugar_tr PF00083.24 gi|48477158|ref|YP_022864.1| - 8.3e-44 150.2 24.1 7.8e-43 147.0 24.1 2.0 1 1 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.16 gi|48477158|ref|YP_022864.1| - 4.7e-29 101.4 32.6 4.7e-29 101.4 32.6 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily ABC_tran PF00005.27 gi|48477159|ref|YP_022865.1| - 9.2e-32 110.4 0.0 2.2e-31 109.2 0.0 1.6 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.10 gi|48477159|ref|YP_022865.1| - 1e-06 28.8 0.0 2.5e-06 27.6 0.0 1.7 1 0 0 1 1 1 1 TOBE domain OB_MalK PF17912.1 gi|48477159|ref|YP_022865.1| - 2.8e-06 28.0 0.1 1.4e-05 25.9 0.1 2.2 1 1 0 1 1 1 1 MalK OB fold domain AAA_21 PF13304.6 gi|48477159|ref|YP_022865.1| - 7.2e-06 26.0 2.8 0.0068 16.3 0.0 2.3 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|48477159|ref|YP_022865.1| - 0.00022 20.7 1.1 0.0031 17.0 1.1 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|48477159|ref|YP_022865.1| - 0.00043 20.9 3.5 0.00047 20.7 0.3 2.4 3 0 0 3 3 3 1 AAA domain RsgA_GTPase PF03193.16 gi|48477159|ref|YP_022865.1| - 0.0017 18.3 0.0 0.0044 17.0 0.0 1.7 1 0 0 1 1 1 1 RsgA GTPase MMR_HSR1 PF01926.23 gi|48477159|ref|YP_022865.1| - 0.0059 16.7 0.2 0.015 15.3 0.2 1.9 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_29 PF13555.6 gi|48477159|ref|YP_022865.1| - 0.0073 16.0 0.1 0.014 15.1 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain CysA_C_terminal PF17850.1 gi|48477159|ref|YP_022865.1| - 0.017 15.7 0.0 0.043 14.4 0.0 1.8 1 0 0 1 1 1 0 CysA C-terminal regulatory domain BPD_transp_1 PF00528.22 gi|48477160|ref|YP_022866.1| - 5.6e-16 58.8 19.0 5.6e-16 58.8 19.0 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|48477161|ref|YP_022867.1| - 1e-10 41.7 29.7 1e-10 41.7 29.7 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component TM_PBP2_N PF16296.5 gi|48477161|ref|YP_022867.1| - 0.46 10.6 2.6 0.55 10.4 1.1 1.9 1 1 1 2 2 2 0 N-terminal of TM subunit in PBP-dependent ABC transporters SBP_bac_1 PF01547.25 gi|48477162|ref|YP_022868.1| - 4e-25 89.4 13.4 5.8e-25 88.9 13.4 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein DUF4330 PF14221.6 gi|48477162|ref|YP_022868.1| - 0.027 14.7 0.3 0.044 14.0 0.3 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4330) Sigma_reg_N PF13800.6 gi|48477162|ref|YP_022868.1| - 0.12 12.7 3.3 4.7 7.6 3.3 2.6 1 1 0 1 1 1 0 Sigma factor regulator N-terminal SNARE PF05739.19 gi|48477162|ref|YP_022868.1| - 0.17 11.9 1.5 0.28 11.2 1.5 1.4 1 0 0 1 1 1 0 SNARE domain Glyco_hydro_38N PF01074.22 gi|48477163|ref|YP_022869.1| - 1.2e-62 211.9 0.8 2e-62 211.2 0.8 1.3 1 0 0 1 1 1 1 Glycosyl hydrolases family 38 N-terminal domain Alpha-mann_mid PF09261.11 gi|48477163|ref|YP_022869.1| - 3.2e-16 59.3 0.0 6.9e-16 58.2 0.0 1.6 1 0 0 1 1 1 1 Alpha mannosidase middle domain Glyco_hydro_38C PF07748.13 gi|48477163|ref|YP_022869.1| - 5.1e-12 46.3 0.2 4.6e-10 39.9 0.0 3.1 3 0 0 3 3 3 1 Glycosyl hydrolases family 38 C-terminal domain Glyco_hydro38C2 PF17677.1 gi|48477163|ref|YP_022869.1| - 9.3e-12 44.9 0.3 3.2e-11 43.2 0.3 2.0 1 0 0 1 1 1 1 Glycosyl hydrolases family 38 C-terminal beta sandwich domain NifZ PF04319.13 gi|48477163|ref|YP_022869.1| - 0.11 12.4 0.0 0.26 11.1 0.0 1.6 1 0 0 1 1 1 0 NifZ domain Glyco_hydro_31 PF01055.26 gi|48477164|ref|YP_022870.1| - 1.1e-110 370.8 0.7 2.7e-110 369.6 0.5 1.6 2 0 0 2 2 2 1 Glycosyl hydrolases family 31 Gal_mutarotas_2 PF13802.6 gi|48477164|ref|YP_022870.1| - 4.3e-19 68.6 0.1 1.2e-18 67.2 0.1 1.8 1 0 0 1 1 1 1 Galactose mutarotase-like Sugar_tr PF00083.24 gi|48477165|ref|YP_022871.1| - 8.7e-54 183.1 31.9 1e-53 182.8 31.9 1.0 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.16 gi|48477165|ref|YP_022871.1| - 3.4e-27 95.3 53.2 2e-23 82.9 37.1 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_4 PF06779.14 gi|48477165|ref|YP_022871.1| - 5.7e-06 25.9 8.7 5.7e-06 25.9 8.7 2.0 3 0 0 3 3 3 1 Uncharacterised MFS-type transporter YbfB DUF1129 PF06570.11 gi|48477165|ref|YP_022871.1| - 0.52 9.8 5.9 2.2 7.7 5.9 2.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1129) DUF998 PF06197.13 gi|48477166|ref|YP_022872.1| - 1.8e-28 99.4 5.8 2e-28 99.3 5.8 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF998) ABC_tran PF00005.27 gi|48477167|ref|YP_022873.1| - 8.7e-29 100.8 0.0 1.7e-28 99.8 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|48477167|ref|YP_022873.1| - 8.3e-14 52.1 0.1 4e-08 33.4 0.0 2.4 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|48477167|ref|YP_022873.1| - 0.00035 20.1 0.2 0.084 12.3 0.0 2.5 3 0 0 3 3 3 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|48477167|ref|YP_022873.1| - 0.00041 20.2 0.1 3 7.5 0.0 3.1 3 0 0 3 3 3 2 AAA ATPase domain AAA_30 PF13604.6 gi|48477167|ref|YP_022873.1| - 0.0024 17.6 0.0 0.0039 16.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain DUF4162 PF13732.6 gi|48477167|ref|YP_022873.1| - 0.0026 18.5 1.4 0.005 17.5 1.4 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_29 PF13555.6 gi|48477167|ref|YP_022873.1| - 0.0057 16.4 0.1 0.011 15.4 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|48477167|ref|YP_022873.1| - 0.037 14.5 7.1 0.3 11.6 7.1 2.2 1 1 0 1 1 1 0 AAA domain AAA_19 PF13245.6 gi|48477167|ref|YP_022873.1| - 0.051 13.9 0.0 0.1 13.0 0.0 1.6 1 1 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|48477167|ref|YP_022873.1| - 0.054 13.4 0.0 0.13 12.1 0.0 1.6 1 0 0 1 1 1 0 RsgA GTPase SbcCD_C PF13558.6 gi|48477167|ref|YP_022873.1| - 0.14 12.4 1.3 0.71 10.1 0.1 2.8 3 1 0 3 3 3 0 Putative exonuclease SbcCD, C subunit AlphaC_C PF17480.2 gi|48477167|ref|YP_022873.1| - 0.15 12.1 1.6 0.31 11.1 1.6 1.5 1 0 0 1 1 1 0 AlphaC C-terminal ABC2_membrane PF01061.24 gi|48477168|ref|YP_022874.1| - 1.9e-19 69.9 27.2 1.9e-19 69.9 27.2 1.6 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|48477168|ref|YP_022874.1| - 1.5e-07 30.9 32.3 1.5e-07 30.9 32.3 2.0 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|48477168|ref|YP_022874.1| - 0.014 14.7 25.5 0.0099 15.2 23.8 1.4 1 1 0 1 1 1 0 ABC-2 family transporter protein DUF1286 PF06939.11 gi|48477169|ref|YP_022875.1| - 1.9e-41 140.8 7.4 1.9e-41 140.8 7.4 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF1286) DUF4184 PF13803.6 gi|48477169|ref|YP_022875.1| - 0.00059 19.6 1.4 0.0045 16.7 0.1 2.1 1 1 0 2 2 2 1 Domain of unknown function (DUF4184) YdjM PF04307.14 gi|48477169|ref|YP_022875.1| - 0.12 11.6 7.3 0.42 9.9 7.3 1.9 1 1 0 1 1 1 0 LexA-binding, inner membrane-associated putative hydrolase DUF3084 PF11283.8 gi|48477169|ref|YP_022875.1| - 0.21 11.6 0.1 0.21 11.6 0.1 2.4 3 1 1 4 4 4 0 Protein of unknown function (DUF3084) PBP PF01161.20 gi|48477170|ref|YP_022876.1| - 2.9e-25 89.1 0.1 3.4e-25 88.9 0.1 1.1 1 0 0 1 1 1 1 Phosphatidylethanolamine-binding protein DUF2341 PF10102.9 gi|48477171|ref|YP_022877.1| - 0.53 10.9 6.4 0.61 10.7 0.4 3.5 3 1 0 3 3 3 0 Domain of unknown function (DUF2341) MFS_1 PF07690.16 gi|48477172|ref|YP_022878.1| - 7.3e-21 74.5 39.9 1.2e-20 73.7 39.9 1.3 1 0 0 1 1 1 1 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|48477172|ref|YP_022878.1| - 1.2e-15 57.3 26.6 3.6e-15 55.8 26.6 1.6 1 1 0 1 1 1 1 Sugar (and other) transporter Beta_helix PF13229.6 gi|48477174|ref|YP_022880.1| - 8.2e-12 45.2 45.8 5.1e-09 36.2 18.7 3.9 2 2 0 2 2 2 2 Right handed beta helix region NosD PF05048.13 gi|48477174|ref|YP_022880.1| - 0.00042 19.7 39.0 0.094 12.0 13.0 3.3 1 1 1 2 2 2 2 Periplasmic copper-binding protein (NosD) Urocanase_C PF17392.2 gi|48477175|ref|YP_022881.1| - 1.1e-89 299.1 1.3 1.2e-89 299.0 0.5 1.5 2 0 0 2 2 2 1 Urocanase C-terminal domain Urocanase PF01175.18 gi|48477175|ref|YP_022881.1| - 6.2e-79 264.5 0.0 8.7e-79 264.0 0.0 1.2 1 0 0 1 1 1 1 Urocanase Rossmann-like domain Urocanase_N PF17391.2 gi|48477175|ref|YP_022881.1| - 1.1e-56 190.0 0.0 1.7e-56 189.4 0.0 1.3 1 0 0 1 1 1 1 Urocanase N-terminal domain Amidohydro_1 PF01979.20 gi|48477177|ref|YP_022883.1| - 1.2e-20 74.1 0.4 1.1e-15 57.9 0.1 2.3 2 0 0 2 2 2 2 Amidohydrolase family Amidohydro_3 PF07969.11 gi|48477177|ref|YP_022883.1| - 2.5e-19 70.1 0.0 1.2e-09 38.2 0.0 2.2 2 0 0 2 2 2 2 Amidohydrolase family Arginase PF00491.21 gi|48477178|ref|YP_022884.1| - 4.6e-67 226.5 0.0 5.2e-67 226.3 0.0 1.0 1 0 0 1 1 1 1 Arginase family Lyase_aromatic PF00221.19 gi|48477179|ref|YP_022885.1| - 2.9e-171 570.2 0.0 3.4e-171 570.0 0.0 1.0 1 0 0 1 1 1 1 Aromatic amino acid lyase GATase_3 PF07685.14 gi|48477180|ref|YP_022886.1| - 1e-34 119.8 0.0 1.4e-34 119.4 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain AAA_26 PF13500.6 gi|48477180|ref|YP_022886.1| - 8.3e-16 58.4 0.1 3.1e-11 43.5 0.0 2.3 2 0 0 2 2 2 2 AAA domain CbiA PF01656.23 gi|48477180|ref|YP_022886.1| - 8.5e-14 51.7 0.0 1.4e-13 51.0 0.0 1.4 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain DJ-1_PfpI PF01965.24 gi|48477180|ref|YP_022886.1| - 0.0026 17.6 0.0 0.0043 16.9 0.0 1.3 1 0 0 1 1 1 1 DJ-1/PfpI family SNO PF01174.19 gi|48477180|ref|YP_022886.1| - 0.0031 17.4 0.0 0.0054 16.6 0.0 1.3 1 0 0 1 1 1 1 SNO glutamine amidotransferase family CbiG_N PF11760.8 gi|48477181|ref|YP_022887.1| - 7.2e-28 96.4 0.1 1.4e-27 95.5 0.1 1.5 1 0 0 1 1 1 1 Cobalamin synthesis G N-terminal CbiG_C PF01890.16 gi|48477181|ref|YP_022887.1| - 1e-18 68.0 0.0 1.7e-18 67.3 0.0 1.4 1 0 0 1 1 1 1 Cobalamin synthesis G C-terminus NTPase_1 PF03266.15 gi|48477181|ref|YP_022887.1| - 0.015 15.2 0.2 0.038 13.9 0.1 1.7 1 1 0 1 1 1 0 NTPase CbiD PF01888.17 gi|48477182|ref|YP_022888.1| - 3.3e-86 288.7 2.4 3.3e-86 288.7 2.4 1.8 2 0 0 2 2 2 1 CbiD CbiC PF02570.15 gi|48477183|ref|YP_022889.1| - 4.7e-55 186.3 0.0 5.4e-55 186.1 0.0 1.0 1 0 0 1 1 1 1 Precorrin-8X methylmutase CbiJ PF02571.14 gi|48477184|ref|YP_022890.1| - 2.5e-62 210.4 0.0 2.8e-62 210.3 0.0 1.0 1 0 0 1 1 1 1 Precorrin-6x reductase CbiJ/CobK TMP-TENI PF02581.17 gi|48477184|ref|YP_022890.1| - 0.13 11.6 0.2 0.81 9.0 0.0 2.3 2 1 1 3 3 3 0 Thiamine monophosphate synthase Methyltransf_25 PF13649.6 gi|48477185|ref|YP_022891.1| - 4.4e-15 56.2 0.0 7e-15 55.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|48477185|ref|YP_022891.1| - 3.3e-14 53.4 0.0 6.2e-14 52.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|48477185|ref|YP_022891.1| - 2.2e-13 50.7 0.0 3.4e-13 50.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|48477185|ref|YP_022891.1| - 1.6e-11 44.2 0.0 2.1e-11 43.8 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|48477185|ref|YP_022891.1| - 8e-11 42.1 0.0 9.4e-11 41.8 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|48477185|ref|YP_022891.1| - 2.4e-09 37.0 0.0 3.5e-09 36.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_2 PF00891.18 gi|48477185|ref|YP_022891.1| - 0.00017 21.0 0.0 0.0002 20.7 0.0 1.1 1 0 0 1 1 1 1 O-methyltransferase domain PrmA PF06325.13 gi|48477185|ref|YP_022891.1| - 0.00021 20.8 0.0 0.00032 20.2 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) FtsJ PF01728.19 gi|48477185|ref|YP_022891.1| - 0.00028 21.0 0.0 0.00037 20.6 0.0 1.3 1 0 0 1 1 1 1 FtsJ-like methyltransferase Met_10 PF02475.16 gi|48477185|ref|YP_022891.1| - 0.00096 18.9 0.0 0.0015 18.4 0.0 1.3 1 0 0 1 1 1 1 Met-10+ like-protein DREV PF05219.12 gi|48477185|ref|YP_022891.1| - 0.0034 16.5 0.0 0.021 13.9 0.0 1.9 1 1 0 1 1 1 1 DREV methyltransferase TehB PF03848.14 gi|48477185|ref|YP_022891.1| - 0.0076 15.7 0.0 0.011 15.1 0.0 1.3 1 1 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_32 PF13679.6 gi|48477185|ref|YP_022891.1| - 0.031 14.3 0.0 0.041 13.9 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_16 PF10294.9 gi|48477185|ref|YP_022891.1| - 0.039 13.7 0.0 0.077 12.7 0.0 1.6 1 1 0 1 1 1 0 Lysine methyltransferase Rsm22 PF09243.10 gi|48477185|ref|YP_022891.1| - 0.059 12.6 0.0 0.076 12.3 0.0 1.1 1 0 0 1 1 1 0 Mitochondrial small ribosomal subunit Rsm22 Methyltransf_20 PF12147.8 gi|48477185|ref|YP_022891.1| - 0.061 12.5 0.0 0.082 12.0 0.0 1.2 1 0 0 1 1 1 0 Putative methyltransferase HxlR PF01638.17 gi|48477186|ref|YP_022892.1| - 2.3e-09 37.0 0.0 3e-09 36.6 0.0 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix DsrD PF08679.11 gi|48477186|ref|YP_022892.1| - 0.072 13.4 0.0 0.099 12.9 0.0 1.3 1 0 0 1 1 1 0 Dissimilatory sulfite reductase D (DsrD) FliG_C PF01706.16 gi|48477187|ref|YP_022893.1| - 0.045 14.0 0.5 1.8 8.8 0.1 2.3 1 1 0 2 2 2 0 FliG C-terminal domain MR_MLE_C PF13378.6 gi|48477188|ref|YP_022894.1| - 6.6e-32 110.8 0.0 8.5e-32 110.5 0.0 1.1 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|48477188|ref|YP_022894.1| - 2.7e-07 30.8 0.0 5.2e-07 29.9 0.0 1.4 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Enolase_C PF00113.22 gi|48477188|ref|YP_022894.1| - 1.1e-05 24.9 0.1 1.7e-05 24.3 0.1 1.2 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain SEA PF01390.20 gi|48477188|ref|YP_022894.1| - 0.07 13.2 0.0 0.17 12.0 0.0 1.6 1 0 0 1 1 1 0 SEA domain Glyco_trans_2_3 PF13632.6 gi|48477189|ref|YP_022895.1| - 2.3e-25 89.7 1.1 2.3e-25 89.7 1.1 2.0 2 0 0 2 2 2 1 Glycosyl transferase family group 2 Glyco_tranf_2_3 PF13641.6 gi|48477189|ref|YP_022895.1| - 8.7e-08 32.3 0.0 1.2e-07 31.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Isochorismatase PF00857.20 gi|48477190|ref|YP_022896.1| - 5e-46 157.1 0.0 5.7e-46 156.9 0.0 1.0 1 0 0 1 1 1 1 Isochorismatase family Methyltransf_31 PF13847.6 gi|48477192|ref|YP_022898.1| - 1.2e-08 34.9 0.2 1.6e-08 34.5 0.2 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|48477192|ref|YP_022898.1| - 7.8e-08 33.0 0.1 1.2e-07 32.4 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|48477192|ref|YP_022898.1| - 1.8e-07 31.8 0.0 2.8e-07 31.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|48477192|ref|YP_022898.1| - 1.4e-06 28.8 0.0 2.2e-06 28.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|48477192|ref|YP_022898.1| - 4.1e-05 23.2 0.0 5.5e-05 22.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain PRMT5 PF05185.16 gi|48477192|ref|YP_022898.1| - 0.00013 21.9 0.0 0.00017 21.5 0.0 1.1 1 0 0 1 1 1 1 PRMT5 arginine-N-methyltransferase Methyltransf_23 PF13489.6 gi|48477192|ref|YP_022898.1| - 0.0056 16.5 0.0 0.014 15.3 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|48477192|ref|YP_022898.1| - 0.0074 15.7 0.2 0.0089 15.4 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) NodS PF05401.11 gi|48477192|ref|YP_022898.1| - 0.015 15.0 0.0 0.02 14.5 0.0 1.2 1 0 0 1 1 1 0 Nodulation protein S (NodS) Methyltransf_16 PF10294.9 gi|48477192|ref|YP_022898.1| - 0.033 13.9 0.1 0.05 13.3 0.1 1.2 1 0 0 1 1 1 0 Lysine methyltransferase PCMT PF01135.19 gi|48477192|ref|YP_022898.1| - 0.036 13.8 0.0 0.058 13.1 0.0 1.4 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) POTRA PF07244.15 gi|48477192|ref|YP_022898.1| - 0.044 14.4 0.2 0.097 13.3 0.2 1.6 1 0 0 1 1 1 0 Surface antigen variable number repeat DREV PF05219.12 gi|48477192|ref|YP_022898.1| - 0.058 12.5 0.1 0.073 12.1 0.1 1.2 1 0 0 1 1 1 0 DREV methyltransferase RrnaAD PF00398.20 gi|48477192|ref|YP_022898.1| - 0.074 12.1 0.0 0.12 11.4 0.0 1.4 1 1 0 1 1 1 0 Ribosomal RNA adenine dimethylase Methyltransf_PK PF05891.12 gi|48477192|ref|YP_022898.1| - 0.1 12.1 0.1 0.33 10.5 0.1 1.8 1 1 0 1 1 1 0 AdoMet dependent proline di-methyltransferase Thioredoxin PF00085.20 gi|48477193|ref|YP_022899.1| - 6.3e-24 83.9 0.0 8.5e-24 83.5 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|48477193|ref|YP_022899.1| - 9.3e-08 32.5 0.1 2.6e-06 27.8 0.1 2.2 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_9 PF14595.6 gi|48477193|ref|YP_022899.1| - 3.5e-05 23.6 0.0 4.1e-05 23.4 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_8 PF13905.6 gi|48477193|ref|YP_022899.1| - 0.00025 21.3 0.2 0.0097 16.2 0.0 2.6 2 1 1 3 3 3 1 Thioredoxin-like Thioredoxin_3 PF13192.6 gi|48477193|ref|YP_022899.1| - 0.0029 17.6 0.0 0.6 10.2 0.0 2.4 1 1 1 2 2 2 1 Thioredoxin domain DSBA PF01323.20 gi|48477193|ref|YP_022899.1| - 0.028 14.2 0.1 0.42 10.4 0.0 2.2 1 1 1 2 2 2 0 DSBA-like thioredoxin domain Redoxin PF08534.10 gi|48477193|ref|YP_022899.1| - 0.075 12.7 0.1 0.14 11.9 0.0 1.5 1 1 0 1 1 1 0 Redoxin AhpC-TSA PF00578.21 gi|48477193|ref|YP_022899.1| - 0.093 12.7 0.0 0.17 11.8 0.0 1.5 1 1 0 1 1 1 0 AhpC/TSA family OST3_OST6 PF04756.13 gi|48477193|ref|YP_022899.1| - 0.1 11.9 0.0 0.12 11.7 0.0 1.2 1 0 0 1 1 1 0 OST3 / OST6 family, transporter family Phosducin PF02114.16 gi|48477193|ref|YP_022899.1| - 0.12 11.3 0.1 0.2 10.6 0.1 1.6 1 1 0 1 1 1 0 Phosducin PNP_UDP_1 PF01048.20 gi|48477195|ref|YP_022901.1| - 1.7e-21 76.6 0.0 1.9e-21 76.4 0.0 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily CbiZ PF01955.18 gi|48477196|ref|YP_022902.1| - 2.5e-40 138.6 0.0 2.8e-40 138.5 0.0 1.0 1 0 0 1 1 1 1 Adenosylcobinamide amidohydrolase tRNA-synt_2d PF01409.20 gi|48477197|ref|YP_022903.1| - 4.1e-78 262.2 0.0 5.9e-78 261.7 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) tRNA_synthFbeta PF17759.1 gi|48477197|ref|YP_022903.1| - 1.4e-10 41.0 0.0 3e-09 36.6 0.0 2.1 2 0 0 2 2 2 1 Phenylalanyl tRNA synthetase beta chain CLM domain DUF4364 PF14277.6 gi|48477197|ref|YP_022903.1| - 3.4e-05 23.6 1.3 0.0088 15.8 0.2 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF4364) tRNA-synt_2b PF00587.25 gi|48477197|ref|YP_022903.1| - 6e-05 23.1 0.0 0.00011 22.2 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) DUF505 PF04458.12 gi|48477197|ref|YP_022903.1| - 0.0029 16.0 0.2 1.5 7.1 0.0 2.3 2 0 0 2 2 2 2 Protein of unknown function (DUF505) S10_plectin PF03501.15 gi|48477197|ref|YP_022903.1| - 0.0041 17.1 0.1 0.013 15.5 0.1 1.9 1 0 0 1 1 1 1 Plectin/S10 domain tRNA-synt_2 PF00152.20 gi|48477197|ref|YP_022903.1| - 0.0081 15.3 0.6 0.12 11.4 0.1 2.8 4 0 0 4 4 4 1 tRNA synthetases class II (D, K and N) DUF3116 PF11313.8 gi|48477197|ref|YP_022903.1| - 0.015 15.2 0.5 0.057 13.3 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3116) HTH_45 PF14947.6 gi|48477197|ref|YP_022903.1| - 0.036 14.1 2.7 0.045 13.7 0.5 2.2 2 1 1 3 3 3 0 Winged helix-turn-helix HTH_54 PF18607.1 gi|48477197|ref|YP_022903.1| - 0.051 13.6 0.6 1.3 9.2 0.1 2.6 2 0 0 2 2 2 0 ParA helix turn helix domain HTH_34 PF13601.6 gi|48477197|ref|YP_022903.1| - 0.12 12.5 0.0 0.48 10.6 0.0 2.0 1 0 0 1 1 1 0 Winged helix DNA-binding domain Mrr_N PF14338.6 gi|48477197|ref|YP_022903.1| - 0.13 12.5 0.0 0.66 10.1 0.0 2.2 2 0 0 2 2 2 0 Mrr N-terminal domain MFS_1 PF07690.16 gi|48477199|ref|YP_022905.1| - 1.2e-31 109.9 65.2 1.3e-24 86.8 41.1 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.6 gi|48477199|ref|YP_022905.1| - 8.2e-05 21.3 29.0 8.2e-05 21.3 29.0 1.7 2 0 0 2 2 2 1 MFS/sugar transport protein MFS_3 PF05977.13 gi|48477199|ref|YP_022905.1| - 0.062 11.7 8.4 0.11 10.9 8.4 1.3 1 1 0 1 1 1 0 Transmembrane secretion effector MFS_1_like PF12832.7 gi|48477199|ref|YP_022905.1| - 0.22 10.3 28.6 0.18 10.6 26.4 2.0 1 1 1 2 2 2 0 MFS_1 like family OATP PF03137.20 gi|48477199|ref|YP_022905.1| - 9.6 4.3 23.8 0.37 9.0 5.5 3.1 1 1 3 4 4 4 0 Organic Anion Transporter Polypeptide (OATP) family DNA_pol_B PF00136.21 gi|48477200|ref|YP_022906.1| - 4.5e-68 230.0 0.2 9.7e-68 228.9 0.2 1.5 1 1 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.19 gi|48477200|ref|YP_022906.1| - 2e-19 69.9 8.6 3e-17 62.8 8.6 2.4 1 1 0 1 1 1 1 DNA polymerase family B, exonuclease domain RNase_H_2 PF13482.6 gi|48477200|ref|YP_022906.1| - 0.0001 22.3 1.0 0.00039 20.4 1.0 2.1 1 1 0 1 1 1 1 RNase_H superfamily DUF1744 PF08490.12 gi|48477200|ref|YP_022906.1| - 0.00052 18.7 0.0 0.00085 18.0 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1744) DNA_pol_B_exo2 PF10108.9 gi|48477200|ref|YP_022906.1| - 0.0021 17.8 0.1 0.005 16.5 0.1 1.6 1 1 0 1 1 1 1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB Parvo_coat_N PF08398.10 gi|48477200|ref|YP_022906.1| - 0.05 13.8 0.1 0.17 12.0 0.1 2.0 1 0 0 1 1 1 0 Parvovirus coat protein VP1 GrpE PF01025.19 gi|48477200|ref|YP_022906.1| - 0.38 10.4 0.1 0.38 10.4 0.1 2.4 3 0 0 3 3 3 0 GrpE CTP_transf_like PF01467.26 gi|48477201|ref|YP_022907.1| - 1.5e-16 60.8 0.0 3e-16 59.9 0.0 1.5 1 1 0 1 1 1 1 Cytidylyltransferase-like HIGH_NTase1 PF05636.11 gi|48477201|ref|YP_022907.1| - 0.0022 17.2 0.2 0.051 12.8 0.4 2.0 2 0 0 2 2 2 2 HIGH Nucleotidyl Transferase dUTPase PF00692.19 gi|48477202|ref|YP_022908.1| - 3e-17 62.5 0.0 3.9e-17 62.1 0.0 1.1 1 0 0 1 1 1 1 dUTPase DCD PF06559.11 gi|48477202|ref|YP_022908.1| - 0.0004 19.3 0.0 0.0016 17.3 0.0 1.8 1 1 1 2 2 2 1 2'-deoxycytidine 5'-triphosphate deaminase (DCD) RNA_pol_A_CTD PF03118.15 gi|48477202|ref|YP_022908.1| - 0.15 11.9 0.1 11 5.9 0.0 2.4 2 0 0 2 2 2 0 Bacterial RNA polymerase, alpha chain C terminal domain Transp_cyt_pur PF02133.15 gi|48477203|ref|YP_022909.1| - 7e-32 110.8 29.6 2.2e-31 109.1 29.6 1.8 1 1 0 1 1 1 1 Permease for cytosine/purines, uracil, thiamine, allantoin MotA_ExbB PF01618.16 gi|48477203|ref|YP_022909.1| - 0.15 11.9 1.0 4.5 7.0 0.2 3.0 2 0 0 2 2 2 0 MotA/TolQ/ExbB proton channel family Cyclase PF04199.13 gi|48477204|ref|YP_022910.1| - 5.2e-30 104.5 0.0 7.7e-30 103.9 0.0 1.3 1 0 0 1 1 1 1 Putative cyclase DNA_pol3_beta_3 PF02768.15 gi|48477205|ref|YP_022911.1| - 0.063 13.1 0.4 0.37 10.6 0.0 2.2 2 1 0 2 2 2 0 DNA polymerase III beta subunit, C-terminal domain ATP1G1_PLM_MAT8 PF02038.16 gi|48477205|ref|YP_022911.1| - 0.097 12.1 0.6 0.26 10.8 0.6 1.7 1 0 0 1 1 1 0 ATP1G1/PLM/MAT8 family DUF2269 PF10027.9 gi|48477205|ref|YP_022911.1| - 0.18 11.8 7.8 0.26 11.3 7.8 1.2 1 0 0 1 1 1 0 Predicted integral membrane protein (DUF2269) FtsX PF02687.21 gi|48477205|ref|YP_022911.1| - 1.2 9.7 15.4 0.61 10.6 5.6 2.4 1 1 1 2 2 2 0 FtsX-like permease family Pkinase PF00069.25 gi|48477207|ref|YP_022913.1| - 1.4e-60 204.9 0.0 5.3e-60 203.0 0.0 2.0 2 0 0 2 2 2 1 Protein kinase domain Pkinase_Tyr PF07714.17 gi|48477207|ref|YP_022913.1| - 1.3e-34 119.6 0.0 4.2e-34 118.0 0.0 1.8 2 0 0 2 2 2 1 Protein tyrosine kinase AAA_16 PF13191.6 gi|48477207|ref|YP_022913.1| - 3.5e-17 63.3 0.0 7.9e-17 62.2 0.0 1.6 1 0 0 1 1 1 1 AAA ATPase domain Pkinase_fungal PF17667.1 gi|48477207|ref|YP_022913.1| - 0.00014 20.8 0.0 0.00024 20.0 0.0 1.3 1 0 0 1 1 1 1 Fungal protein kinase SHNi-TPR PF10516.9 gi|48477207|ref|YP_022913.1| - 0.00058 19.3 0.1 0.0023 17.3 0.0 2.1 2 0 0 2 2 2 1 SHNi-TPR APH PF01636.23 gi|48477207|ref|YP_022913.1| - 0.0043 17.0 0.0 0.1 12.5 0.0 2.3 1 1 1 2 2 2 1 Phosphotransferase enzyme family AAA_22 PF13401.6 gi|48477207|ref|YP_022913.1| - 0.01 16.1 0.0 0.059 13.6 0.0 2.3 2 0 0 2 2 2 0 AAA domain TPR_12 PF13424.6 gi|48477207|ref|YP_022913.1| - 0.063 13.6 9.0 0.4 11.0 0.5 4.7 3 3 2 5 5 5 0 Tetratricopeptide repeat TPR_19 PF14559.6 gi|48477207|ref|YP_022913.1| - 0.098 13.2 1.6 2.7 8.5 0.3 3.6 4 0 0 4 4 4 0 Tetratricopeptide repeat TPR_7 PF13176.6 gi|48477207|ref|YP_022913.1| - 0.11 12.5 1.1 20 5.5 0.0 3.6 1 1 1 2 2 2 0 Tetratricopeptide repeat TPR_14 PF13428.6 gi|48477207|ref|YP_022913.1| - 0.14 13.1 2.9 57 4.9 0.0 4.4 5 0 0 5 5 3 0 Tetratricopeptide repeat Trans_coact PF16805.5 gi|48477207|ref|YP_022913.1| - 0.35 11.0 2.2 1.3 9.1 0.4 3.0 2 0 0 2 2 2 0 Phage late-transcription coactivator TPR_10 PF13374.6 gi|48477207|ref|YP_022913.1| - 0.59 10.1 3.2 11 6.1 0.0 3.7 2 1 1 3 3 3 0 Tetratricopeptide repeat TPR_1 PF00515.28 gi|48477207|ref|YP_022913.1| - 0.67 9.9 5.5 17 5.4 0.0 4.4 4 0 0 4 4 4 0 Tetratricopeptide repeat TPR_2 PF07719.17 gi|48477207|ref|YP_022913.1| - 1.1 9.5 12.5 1 9.6 0.1 5.0 4 1 1 5 5 4 0 Tetratricopeptide repeat TPR_17 PF13431.6 gi|48477207|ref|YP_022913.1| - 2.1 8.9 5.2 1.4e+02 3.2 0.0 4.4 4 0 0 4 4 3 0 Tetratricopeptide repeat UbiA PF01040.18 gi|48477208|ref|YP_022914.1| - 1.8e-35 122.4 17.5 1.8e-35 122.4 17.5 1.4 1 1 0 1 1 1 1 UbiA prenyltransferase family Putative_PNPOx PF01243.20 gi|48477208|ref|YP_022914.1| - 0.00023 21.3 0.0 0.00089 19.4 0.0 2.0 2 0 0 2 2 2 1 Pyridoxamine 5'-phosphate oxidase DUF3915 PF13054.6 gi|48477208|ref|YP_022914.1| - 0.1 12.6 0.0 0.28 11.2 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3915) UPF0542 PF15086.6 gi|48477208|ref|YP_022914.1| - 0.63 10.0 3.0 1.7 8.6 2.3 2.1 2 0 0 2 2 2 0 Uncharacterised protein family UPF0542 UbiA PF01040.18 gi|48477209|ref|YP_022915.1| - 1.1e-12 47.8 16.3 3.6e-12 46.1 16.3 1.7 1 1 0 1 1 1 1 UbiA prenyltransferase family DUF5472 PF17566.2 gi|48477209|ref|YP_022915.1| - 0.88 9.6 3.8 1.3 9.1 0.2 3.0 3 1 1 4 4 4 0 Family of unknown function (DUF5472) MFS_1 PF07690.16 gi|48477210|ref|YP_022916.1| - 8.8e-29 100.5 42.0 1.2e-28 100.1 42.0 1.3 1 0 0 1 1 1 1 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|48477210|ref|YP_022916.1| - 2.7e-06 26.5 40.1 8e-05 21.7 16.6 2.7 2 1 0 2 2 2 2 Sugar (and other) transporter MFS_3 PF05977.13 gi|48477210|ref|YP_022916.1| - 6.3e-06 24.9 7.2 1.2e-05 24.0 7.2 1.4 1 0 0 1 1 1 1 Transmembrane secretion effector DUF2628 PF10947.8 gi|48477210|ref|YP_022916.1| - 0.016 15.5 0.1 0.016 15.5 0.1 4.0 4 2 1 5 5 5 0 Protein of unknown function (DUF2628) AA_permease PF00324.21 gi|48477211|ref|YP_022917.1| - 5.2e-28 97.9 68.9 8.5e-28 97.2 68.9 1.3 1 1 0 1 1 1 1 Amino acid permease AA_permease_2 PF13520.6 gi|48477211|ref|YP_022917.1| - 5.9e-22 78.1 73.1 7.5e-22 77.7 73.1 1.1 1 0 0 1 1 1 1 Amino acid permease PALP PF00291.25 gi|48477213|ref|YP_022919.1| - 8.6e-38 130.4 0.0 1.1e-37 130.1 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme DrsE PF02635.15 gi|48477214|ref|YP_022920.1| - 0.038 14.4 0.1 0.044 14.1 0.1 1.1 1 0 0 1 1 1 0 DsrE/DsrF-like family IFN-gamma PF00714.17 gi|48477214|ref|YP_022920.1| - 0.081 12.8 0.1 0.096 12.5 0.1 1.1 1 0 0 1 1 1 0 Interferon gamma PMSR PF01625.21 gi|48477215|ref|YP_022921.1| - 5.9e-62 208.4 2.3 7.1e-62 208.1 2.3 1.1 1 0 0 1 1 1 1 Peptide methionine sulfoxide reductase PyocinActivator PF11112.8 gi|48477215|ref|YP_022921.1| - 0.065 13.4 0.9 2 8.6 0.0 2.8 2 1 1 3 3 3 0 Pyocin activator protein PrtN DUF929 PF06053.11 gi|48477216|ref|YP_022922.1| - 1.3e-70 237.6 9.2 1.6e-70 237.3 9.2 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF929) FtsX PF02687.21 gi|48477216|ref|YP_022922.1| - 0.12 12.8 4.7 2.6 8.6 4.7 2.4 1 1 0 1 1 1 0 FtsX-like permease family Ion_trans_2 PF07885.16 gi|48477217|ref|YP_022923.1| - 2.1e-10 40.4 9.3 4.5e-10 39.4 9.3 1.5 1 0 0 1 1 1 1 Ion channel TrkA_N PF02254.18 gi|48477217|ref|YP_022923.1| - 4.6e-06 26.9 2.1 4.6e-06 26.9 2.1 2.3 2 0 0 2 2 2 1 TrkA-N domain Ion_trans PF00520.31 gi|48477217|ref|YP_022923.1| - 9.5e-05 21.7 5.8 0.00016 21.0 5.8 1.3 1 0 0 1 1 1 1 Ion transport protein Lig_chan PF00060.26 gi|48477217|ref|YP_022923.1| - 0.0001 22.2 0.1 0.0002 21.2 0.1 1.3 1 1 0 1 1 1 1 Ligand-gated ion channel DUF3139 PF11337.8 gi|48477217|ref|YP_022923.1| - 0.29 11.8 4.9 2 9.1 0.6 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3139) FAD-oxidase_C PF02913.19 gi|48477218|ref|YP_022924.1| - 2.6e-40 138.6 0.0 5.9e-40 137.5 0.0 1.5 2 0 0 2 2 2 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.23 gi|48477218|ref|YP_022924.1| - 5e-38 130.0 0.3 3.6e-37 127.2 0.0 2.3 2 0 0 2 2 2 1 FAD binding domain Fer4_8 PF13183.6 gi|48477219|ref|YP_022925.1| - 2.2e-11 44.0 4.9 2.4e-11 43.9 3.2 1.9 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|48477219|ref|YP_022925.1| - 1e-08 35.6 2.9 2.3e-08 34.4 2.9 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|48477219|ref|YP_022925.1| - 2.1e-08 34.2 3.5 2.1e-08 34.2 3.5 1.8 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|48477219|ref|YP_022925.1| - 4.5e-08 33.6 5.2 1.1e-07 32.3 5.2 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain CCG PF02754.16 gi|48477219|ref|YP_022925.1| - 2.9e-06 27.4 0.0 8.5e-06 25.9 0.0 1.9 1 0 0 1 1 1 1 Cysteine-rich domain Fer4 PF00037.27 gi|48477219|ref|YP_022925.1| - 3.6e-06 26.6 11.3 0.0015 18.3 2.3 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|48477219|ref|YP_022925.1| - 8.4e-06 25.8 9.6 0.00032 20.8 9.9 2.7 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|48477219|ref|YP_022925.1| - 2.8e-05 24.3 10.7 0.00059 20.0 0.4 2.6 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|48477219|ref|YP_022925.1| - 3.1e-05 24.0 7.4 0.017 15.2 0.4 2.7 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|48477219|ref|YP_022925.1| - 0.00017 21.5 17.4 0.0014 18.6 1.7 2.7 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_22 PF17179.4 gi|48477219|ref|YP_022925.1| - 0.0006 20.6 3.8 0.2 12.5 0.2 2.6 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|48477219|ref|YP_022925.1| - 0.0051 16.8 12.2 0.053 13.6 1.7 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|48477219|ref|YP_022925.1| - 0.011 16.6 12.7 0.25 12.3 11.5 2.9 2 1 2 4 4 4 0 4Fe-4S double cluster binding domain Thoc2 PF11732.8 gi|48477219|ref|YP_022925.1| - 0.055 13.5 0.2 2.5 8.2 0.1 2.7 2 0 0 2 2 2 0 Transcription- and export-related complex subunit Fer4_13 PF13370.6 gi|48477219|ref|YP_022925.1| - 0.065 13.8 9.0 0.38 11.3 0.7 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_4 PF12800.7 gi|48477219|ref|YP_022925.1| - 0.31 11.6 17.3 0.41 11.3 2.5 2.7 3 0 0 3 3 2 0 4Fe-4S binding domain UxuA PF03786.13 gi|48477220|ref|YP_022926.1| - 1.7e-92 309.9 3.6 6.7e-63 212.6 0.5 2.0 1 1 1 2 2 2 2 D-mannonate dehydratase (UxuA) AP_endonuc_2 PF01261.24 gi|48477220|ref|YP_022926.1| - 3.2e-09 36.5 0.0 4.1e-09 36.2 0.0 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel Asp_Glu_race PF01177.22 gi|48477221|ref|YP_022927.1| - 2.7e-52 177.8 0.1 3.1e-52 177.7 0.1 1.0 1 0 0 1 1 1 1 Asp/Glu/Hydantoin racemase Pyridoxal_deC PF00282.19 gi|48477222|ref|YP_022928.1| - 1.5e-23 83.2 0.0 2.3e-23 82.5 0.0 1.3 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain Aminotran_5 PF00266.19 gi|48477222|ref|YP_022928.1| - 5.6e-11 42.0 0.0 1.2e-10 40.9 0.0 1.7 1 1 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.21 gi|48477222|ref|YP_022928.1| - 0.032 13.4 0.0 0.16 11.1 0.0 1.8 2 0 0 2 2 2 0 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.20 gi|48477222|ref|YP_022928.1| - 0.13 10.7 0.0 0.19 10.2 0.0 1.1 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme PALP PF00291.25 gi|48477223|ref|YP_022929.1| - 2e-64 217.9 0.1 2.2e-64 217.7 0.1 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ADH_zinc_N PF00107.26 gi|48477223|ref|YP_022929.1| - 0.024 14.6 0.1 0.063 13.3 0.1 1.8 1 1 0 1 1 1 0 Zinc-binding dehydrogenase FUSC PF04632.12 gi|48477223|ref|YP_022929.1| - 0.19 10.2 0.0 0.24 9.9 0.0 1.1 1 0 0 1 1 1 0 Fusaric acid resistance protein family ATP_bind_3 PF01171.20 gi|48477224|ref|YP_022930.1| - 1.9e-11 44.1 0.0 3.3e-11 43.3 0.0 1.4 1 0 0 1 1 1 1 PP-loop family tRNA_Me_trans PF03054.16 gi|48477224|ref|YP_022930.1| - 5.2e-06 25.5 0.0 8.8e-06 24.7 0.0 1.3 1 0 0 1 1 1 1 tRNA methyl transferase RecR PF02132.15 gi|48477224|ref|YP_022930.1| - 0.00082 18.9 1.9 0.00082 18.9 1.9 2.4 3 0 0 3 3 3 1 RecR protein Peptidase_C97 PF05903.14 gi|48477224|ref|YP_022930.1| - 0.0056 16.5 0.0 0.011 15.6 0.0 1.5 1 0 0 1 1 1 1 PPPDE putative peptidase domain PAPS_reduct PF01507.19 gi|48477224|ref|YP_022930.1| - 0.01 15.9 0.1 0.058 13.4 0.1 2.0 1 1 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family QueC PF06508.13 gi|48477224|ref|YP_022930.1| - 0.093 12.2 0.0 0.29 10.6 0.0 1.9 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC DZR PF12773.7 gi|48477224|ref|YP_022930.1| - 0.5 10.4 3.7 2 8.5 0.2 2.9 3 0 0 3 3 3 0 Double zinc ribbon YyzF PF14116.6 gi|48477224|ref|YP_022930.1| - 5.1 7.2 7.7 1.8 8.7 0.5 3.0 2 1 1 3 3 3 0 YyzF-like protein Exonuc_VIII PF06630.11 gi|48477225|ref|YP_022931.1| - 0.17 11.7 0.1 0.2 11.5 0.1 1.3 1 0 0 1 1 1 0 Enterobacterial exodeoxyribonuclease VIII Usp PF00582.26 gi|48477226|ref|YP_022932.1| - 1.2e-17 64.8 0.0 4.4e-13 49.9 0.0 3.0 2 1 0 2 2 2 2 Universal stress protein family KdpC PF02669.15 gi|48477227|ref|YP_022933.1| - 2.3e-43 148.1 0.1 2.9e-43 147.8 0.1 1.1 1 0 0 1 1 1 1 K+-transporting ATPase, c chain E1-E2_ATPase PF00122.20 gi|48477228|ref|YP_022934.1| - 2.7e-32 111.7 2.3 2.7e-32 111.7 2.3 2.9 3 0 0 3 3 3 1 E1-E2 ATPase Hydrolase PF00702.26 gi|48477228|ref|YP_022934.1| - 1.1e-27 97.7 0.1 1.6e-27 97.2 0.1 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|48477228|ref|YP_022934.1| - 7.2e-06 25.9 4.6 0.0002 21.2 3.5 2.5 1 1 1 2 2 2 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|48477228|ref|YP_022934.1| - 0.014 15.8 0.0 0.041 14.3 0.0 1.8 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|48477228|ref|YP_022934.1| - 0.04 14.0 0.4 0.14 12.2 0.3 1.9 1 1 0 1 1 1 0 Haloacid dehalogenase-like hydrolase FtsL PF04999.13 gi|48477228|ref|YP_022934.1| - 0.087 12.8 0.0 0.25 11.4 0.0 1.8 1 0 0 1 1 1 0 Cell division protein FtsL KdpA PF03814.15 gi|48477229|ref|YP_022935.1| - 1.9e-154 514.9 29.3 2.5e-154 514.5 29.3 1.0 1 0 0 1 1 1 1 Potassium-transporting ATPase A subunit ANAPC3 PF12895.7 gi|48477230|ref|YP_022936.1| - 0.00024 21.3 13.9 0.0012 19.0 1.2 5.0 4 2 0 4 4 4 2 Anaphase-promoting complex, cyclosome, subunit 3 TPR_12 PF13424.6 gi|48477230|ref|YP_022936.1| - 0.00035 20.8 3.5 18 5.7 0.0 6.0 6 1 0 6 6 6 2 Tetratricopeptide repeat TPR_2 PF07719.17 gi|48477230|ref|YP_022936.1| - 0.0018 18.3 22.5 0.055 13.6 0.3 7.6 8 1 1 9 9 9 2 Tetratricopeptide repeat TPR_16 PF13432.6 gi|48477230|ref|YP_022936.1| - 0.0039 17.8 0.0 3.9 8.2 0.0 4.0 5 0 0 5 5 5 1 Tetratricopeptide repeat TPR_8 PF13181.6 gi|48477230|ref|YP_022936.1| - 0.13 12.6 36.7 1.1 9.6 1.1 9.1 10 1 1 11 11 11 0 Tetratricopeptide repeat TPR_19 PF14559.6 gi|48477230|ref|YP_022936.1| - 0.13 12.7 0.7 6.6 7.3 0.0 3.7 3 1 1 4 4 4 0 Tetratricopeptide repeat TPR_6 PF13174.6 gi|48477230|ref|YP_022936.1| - 0.28 11.9 1.9 1.3e+02 3.5 0.0 4.8 4 0 0 4 4 4 0 Tetratricopeptide repeat Peptidase_M50 PF02163.22 gi|48477231|ref|YP_022937.1| - 1.9e-07 30.6 14.6 0.00023 20.5 0.5 3.0 1 1 1 2 2 2 2 Peptidase family M50 Peptidase_M48 PF01435.18 gi|48477232|ref|YP_022938.1| - 2.5e-29 102.4 0.0 3.9e-29 101.8 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.11 gi|48477232|ref|YP_022938.1| - 0.0017 17.6 0.1 0.0035 16.6 0.1 1.4 1 0 0 1 1 1 1 BlaR1 peptidase M56 DNA_pack_N PF02500.15 gi|48477232|ref|YP_022938.1| - 0.066 13.0 0.0 0.098 12.5 0.0 1.3 1 0 0 1 1 1 0 Probable DNA packing protein, N-terminus DUF3810 PF12725.7 gi|48477232|ref|YP_022938.1| - 0.26 10.6 0.0 0.26 10.6 0.0 2.3 3 0 0 3 3 3 0 Protein of unknown function (DUF3810) Phage_holin_3_6 PF07332.11 gi|48477232|ref|YP_022938.1| - 4.3 7.4 7.6 18 5.4 3.1 2.2 2 0 0 2 2 2 0 Putative Actinobacterial Holin-X, holin superfamily III Thermopsin PF05317.11 gi|48477233|ref|YP_022939.1| - 9.2e-68 228.5 15.4 9.2e-68 228.5 15.4 3.1 3 0 0 3 3 3 1 Thermopsin MFS_1 PF07690.16 gi|48477234|ref|YP_022940.1| - 1.3e-54 185.5 81.2 1.8e-35 122.5 11.6 3.0 1 1 2 3 3 3 3 Major Facilitator Superfamily OATP PF03137.20 gi|48477234|ref|YP_022940.1| - 1.2 7.3 27.7 0.44 8.8 0.4 3.9 2 2 2 4 4 4 0 Organic Anion Transporter Polypeptide (OATP) family EamA PF00892.20 gi|48477235|ref|YP_022941.1| - 2.2e-24 86.2 51.4 9.2e-14 51.8 20.8 2.4 2 1 0 2 2 2 2 EamA-like transporter family RseC_MucC PF04246.12 gi|48477235|ref|YP_022941.1| - 0.03 14.3 3.4 0.03 14.3 3.4 4.1 2 2 2 4 4 4 0 Positive regulator of sigma(E), RseC/MucC E1-E2_ATPase PF00122.20 gi|48477236|ref|YP_022942.1| - 1.4e-48 164.8 0.5 1.4e-48 164.8 0.5 2.2 2 0 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.26 gi|48477236|ref|YP_022942.1| - 1.1e-28 101.0 0.0 1.6e-28 100.4 0.0 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase YHS PF04945.13 gi|48477236|ref|YP_022942.1| - 7.2e-12 45.2 1.5 1.6e-11 44.1 1.5 1.5 1 0 0 1 1 1 1 YHS domain Hydrolase_3 PF08282.12 gi|48477236|ref|YP_022942.1| - 1.6e-10 41.1 2.5 0.00014 21.7 0.1 2.4 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|48477236|ref|YP_022942.1| - 9.2e-07 29.1 1.0 2.7e-06 27.6 1.0 1.7 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase zf-FCS PF06467.14 gi|48477236|ref|YP_022942.1| - 0.0024 17.8 0.5 0.0046 16.9 0.5 1.4 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif HAD PF12710.7 gi|48477236|ref|YP_022942.1| - 0.0027 18.2 0.0 0.0063 16.9 0.0 1.6 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase CE2_N PF17996.1 gi|48477236|ref|YP_022942.1| - 0.021 14.8 0.0 0.044 13.8 0.0 1.5 1 0 0 1 1 1 0 Carbohydrate esterase 2 N-terminal Arc_trans_TRASH PF08394.10 gi|48477236|ref|YP_022942.1| - 0.071 13.5 2.3 0.089 13.1 0.9 1.9 2 0 0 2 2 2 0 Archaeal TRASH domain DUF4434 PF14488.6 gi|48477236|ref|YP_022942.1| - 0.15 12.0 0.0 0.37 10.8 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4434) UbiD PF01977.16 gi|48477237|ref|YP_022943.1| - 6.5e-143 476.4 0.0 7.4e-143 476.3 0.0 1.0 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase AA_permease_2 PF13520.6 gi|48477239|ref|YP_022945.1| - 6.2e-26 91.2 48.3 7.5e-26 90.9 48.3 1.0 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|48477239|ref|YP_022945.1| - 7.4e-10 38.0 44.2 9.6e-10 37.6 44.2 1.1 1 0 0 1 1 1 1 Amino acid permease Iso_dh PF00180.20 gi|48477240|ref|YP_022946.1| - 2.1e-95 319.9 0.0 2.4e-95 319.6 0.0 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase P22_Tail-4 PF11650.8 gi|48477240|ref|YP_022946.1| - 0.004 17.1 0.2 0.0095 15.9 0.2 1.6 1 1 0 1 1 1 1 P22 tail accessory factor Citrate_synt PF00285.21 gi|48477241|ref|YP_022947.1| - 1.4e-94 317.1 0.0 1.6e-94 316.9 0.0 1.0 1 0 0 1 1 1 1 Citrate synthase, C-terminal domain PEP_mutase PF13714.6 gi|48477242|ref|YP_022948.1| - 2.1e-44 151.8 0.1 2.5e-44 151.5 0.1 1.0 1 0 0 1 1 1 1 Phosphoenolpyruvate phosphomutase ICL PF00463.21 gi|48477242|ref|YP_022948.1| - 4.9e-13 48.4 1.4 8.3e-13 47.7 1.4 1.3 1 0 0 1 1 1 1 Isocitrate lyase family MmgE_PrpD PF03972.14 gi|48477243|ref|YP_022949.1| - 1.2e-91 307.5 0.0 1.5e-91 307.2 0.0 1.0 1 0 0 1 1 1 1 MmgE/PrpD family PheRS_DBD2 PF18554.1 gi|48477243|ref|YP_022949.1| - 0.078 13.0 0.5 0.24 11.4 0.5 1.8 1 0 0 1 1 1 0 PheRS DNA binding domain 2 FmdA_AmdA PF03069.15 gi|48477244|ref|YP_022950.1| - 5.8e-52 176.8 0.2 2.4e-33 115.5 0.1 2.0 1 1 1 2 2 2 2 Acetamidase/Formamidase family LeuA_dimer PF08502.10 gi|48477244|ref|YP_022950.1| - 0.0063 16.4 0.1 0.01 15.7 0.1 1.4 1 0 0 1 1 1 1 LeuA allosteric (dimerisation) domain Pro_CA PF00484.19 gi|48477245|ref|YP_022951.1| - 0.054 13.8 0.1 0.18 12.1 0.1 1.8 1 1 0 1 1 1 0 Carbonic anhydrase DUF5064 PF16703.5 gi|48477245|ref|YP_022951.1| - 0.057 13.9 0.0 0.1 13.1 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF5064) DHODB_Fe-S_bind PF10418.9 gi|48477246|ref|YP_022952.1| - 5.4e-08 32.5 0.5 1.2e-07 31.4 0.5 1.6 1 0 0 1 1 1 1 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B NAD_binding_1 PF00175.21 gi|48477246|ref|YP_022952.1| - 0.0006 20.4 0.1 0.0058 17.3 0.1 2.3 1 1 0 1 1 1 1 Oxidoreductase NAD-binding domain Seadorna_VP6 PF07407.11 gi|48477246|ref|YP_022952.1| - 0.1 11.5 0.6 0.14 11.1 0.6 1.2 1 0 0 1 1 1 0 Seadornavirus VP6 protein DHO_dh PF01180.21 gi|48477247|ref|YP_022953.1| - 2.4e-59 201.0 1.0 2.8e-59 200.7 1.0 1.0 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase Dus PF01207.17 gi|48477247|ref|YP_022953.1| - 8.4e-12 44.8 0.0 5.5e-11 42.1 0.0 2.0 1 1 0 1 1 1 1 Dihydrouridine synthase (Dus) His_biosynth PF00977.21 gi|48477247|ref|YP_022953.1| - 7.3e-06 25.6 0.3 0.00092 18.7 0.1 2.9 3 0 0 3 3 3 1 Histidine biosynthesis protein NMO PF03060.15 gi|48477247|ref|YP_022953.1| - 0.00039 19.9 0.1 0.0016 17.9 0.1 1.9 2 0 0 2 2 2 1 Nitronate monooxygenase G3P_antiterm PF04309.12 gi|48477247|ref|YP_022953.1| - 0.00065 19.1 1.2 0.18 11.2 0.1 2.9 3 0 0 3 3 3 2 Glycerol-3-phosphate responsive antiterminator IMPDH PF00478.25 gi|48477247|ref|YP_022953.1| - 0.0043 16.1 0.1 0.0088 15.1 0.1 1.4 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain ThiG PF05690.14 gi|48477247|ref|YP_022953.1| - 0.015 14.6 1.0 1.1 8.5 0.2 3.0 2 1 1 3 3 3 0 Thiazole biosynthesis protein ThiG DUF561 PF04481.12 gi|48477247|ref|YP_022953.1| - 0.017 14.3 4.7 0.021 14.0 0.1 2.7 2 1 0 3 3 3 0 Protein of unknown function (DUF561) TMP-TENI PF02581.17 gi|48477247|ref|YP_022953.1| - 0.047 13.0 0.8 0.093 12.1 0.1 2.0 3 1 0 3 3 3 0 Thiamine monophosphate synthase AAA_12 PF13087.6 gi|48477248|ref|YP_022954.1| - 8.3e-23 81.1 0.3 3e-22 79.2 0.3 2.0 1 0 0 1 1 1 1 AAA domain DUF4011 PF13195.6 gi|48477248|ref|YP_022954.1| - 1.3e-21 77.2 0.2 1.3e-21 77.2 0.2 2.5 2 0 0 2 2 2 1 Protein of unknown function (DUF4011) MTES_1575 PF18741.1 gi|48477248|ref|YP_022954.1| - 3.5e-21 75.2 0.2 1.5e-20 73.2 0.2 2.2 1 0 0 1 1 1 1 REase_MTES_1575 AAA_11 PF13086.6 gi|48477248|ref|YP_022954.1| - 4.9e-16 59.3 0.7 5.7e-07 29.6 0.0 2.9 3 0 0 3 3 3 2 AAA domain AAA_30 PF13604.6 gi|48477248|ref|YP_022954.1| - 2.1e-07 30.8 0.0 0.0014 18.4 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_19 PF13245.6 gi|48477248|ref|YP_022954.1| - 7.1e-07 29.7 0.0 9.8e-05 22.7 0.0 2.4 2 0 0 2 2 2 1 AAA domain DUF559 PF04480.12 gi|48477248|ref|YP_022954.1| - 0.00012 21.9 0.2 0.00079 19.3 0.0 2.5 3 0 0 3 3 2 1 Protein of unknown function (DUF559) IstB_IS21 PF01695.17 gi|48477248|ref|YP_022954.1| - 0.00059 19.6 0.0 0.0017 18.1 0.0 1.8 1 0 0 1 1 1 1 IstB-like ATP binding protein Viral_helicase1 PF01443.18 gi|48477248|ref|YP_022954.1| - 0.013 15.2 0.0 21 4.8 0.0 3.4 3 0 0 3 3 3 0 Viral (Superfamily 1) RNA helicase AAA PF00004.29 gi|48477248|ref|YP_022954.1| - 0.032 14.6 0.8 0.13 12.6 0.0 2.5 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) RsgA_GTPase PF03193.16 gi|48477248|ref|YP_022954.1| - 0.043 13.7 0.1 0.19 11.7 0.0 2.1 2 0 0 2 2 2 0 RsgA GTPase Helicase_RecD PF05127.14 gi|48477248|ref|YP_022954.1| - 0.047 13.5 0.0 0.58 10.0 0.0 2.5 2 0 0 2 2 2 0 Helicase ABC_tran PF00005.27 gi|48477248|ref|YP_022954.1| - 0.098 13.2 0.6 5.3 7.5 0.0 3.2 3 0 0 3 3 3 0 ABC transporter AAA_28 PF13521.6 gi|48477248|ref|YP_022954.1| - 0.15 12.3 0.0 6.7 6.9 0.0 2.9 3 0 0 3 3 3 0 AAA domain UvrD_C_2 PF13538.6 gi|48477248|ref|YP_022954.1| - 0.15 11.9 0.0 0.38 10.6 0.0 1.7 1 1 0 1 1 1 0 UvrD-like helicase C-terminal domain VWA_2 PF13519.6 gi|48477249|ref|YP_022955.1| - 2.7e-13 50.5 0.1 6.8e-13 49.2 0.1 1.6 1 0 0 1 1 1 1 von Willebrand factor type A domain AAA_lid_2 PF17863.1 gi|48477249|ref|YP_022955.1| - 1.3e-07 31.4 0.0 2.3e-07 30.6 0.0 1.3 1 0 0 1 1 1 1 AAA lid domain VWA_CoxE PF05762.14 gi|48477249|ref|YP_022955.1| - 0.00012 21.5 0.1 0.00016 21.1 0.1 1.2 1 0 0 1 1 1 1 VWA domain containing CoxE-like protein DUF5620 PF18522.1 gi|48477249|ref|YP_022955.1| - 0.024 15.0 0.1 0.052 14.0 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF5620) Mg_chelatase PF01078.21 gi|48477250|ref|YP_022956.1| - 1.4e-10 40.9 0.5 1.5e-05 24.5 0.0 2.7 3 0 0 3 3 3 2 Magnesium chelatase, subunit ChlI AAA_5 PF07728.14 gi|48477250|ref|YP_022956.1| - 6e-09 36.0 0.2 0.0011 18.9 0.0 2.2 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) MCM PF00493.23 gi|48477250|ref|YP_022956.1| - 0.00052 19.2 0.1 0.18 10.9 0.0 2.6 2 1 0 2 2 2 2 MCM P-loop domain AAA PF00004.29 gi|48477250|ref|YP_022956.1| - 0.00063 20.2 0.2 0.0039 17.6 0.2 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|48477250|ref|YP_022956.1| - 0.00088 19.7 0.0 0.0018 18.7 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_7 PF12775.7 gi|48477250|ref|YP_022956.1| - 0.0022 17.6 0.0 0.0046 16.5 0.0 1.6 1 0 0 1 1 1 1 P-loop containing dynein motor region AAA_3 PF07726.11 gi|48477250|ref|YP_022956.1| - 0.0023 17.8 0.0 1.4 8.8 0.0 2.3 1 1 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) ATP_bind_1 PF03029.17 gi|48477250|ref|YP_022956.1| - 0.0071 16.2 0.0 0.02 14.7 0.0 1.7 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein AAA_22 PF13401.6 gi|48477250|ref|YP_022956.1| - 0.012 15.9 0.0 0.027 14.7 0.0 1.6 1 1 0 1 1 1 0 AAA domain Rad17 PF03215.15 gi|48477250|ref|YP_022956.1| - 0.028 14.4 0.1 0.047 13.6 0.1 1.5 1 0 0 1 1 1 0 Rad17 P-loop domain RuvB_N PF05496.12 gi|48477250|ref|YP_022956.1| - 0.029 14.1 0.2 12 5.6 0.0 2.7 2 1 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain AAA_2 PF07724.14 gi|48477250|ref|YP_022956.1| - 0.034 14.3 0.0 0.31 11.1 0.0 2.2 1 1 0 1 1 1 0 AAA domain (Cdc48 subfamily) Sigma54_activat PF00158.26 gi|48477250|ref|YP_022956.1| - 0.043 13.5 0.0 2.1 8.0 0.0 2.2 2 0 0 2 2 2 0 Sigma-54 interaction domain DUF4403 PF14356.6 gi|48477250|ref|YP_022956.1| - 0.13 10.9 0.1 0.29 9.7 0.0 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4403) CobN-Mg_chel PF02514.16 gi|48477251|ref|YP_022957.1| - 6.1e-296 984.6 0.0 1.7e-293 976.5 0.0 2.0 1 1 0 1 1 1 1 CobN/Magnesium Chelatase SBP_bac_5 PF00496.22 gi|48477252|ref|YP_022958.1| - 3e-40 138.4 9.3 4.2e-40 137.9 9.3 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle DUF3114 PF11311.8 gi|48477252|ref|YP_022958.1| - 0.77 9.2 8.4 0.075 12.6 0.7 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3114) SBP_bac_5 PF00496.22 gi|48477253|ref|YP_022959.1| - 5.9e-34 117.6 6.8 9.7e-34 116.9 6.8 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle UbiA PF01040.18 gi|48477254|ref|YP_022960.1| - 5.4e-33 114.3 11.5 6.8e-33 114.0 11.5 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family DUF1774 PF08611.10 gi|48477254|ref|YP_022960.1| - 0.034 14.4 3.6 0.034 14.4 3.6 2.9 3 1 0 3 3 3 0 Fungal protein of unknown function (DUF1774) PcrB PF01884.17 gi|48477255|ref|YP_022961.1| - 1.5e-54 184.9 1.1 1.8e-54 184.6 1.1 1.0 1 0 0 1 1 1 1 PcrB family His_biosynth PF00977.21 gi|48477255|ref|YP_022961.1| - 1.9e-09 37.4 0.4 3.1e-09 36.6 0.2 1.5 2 0 0 2 2 2 1 Histidine biosynthesis protein G3P_antiterm PF04309.12 gi|48477255|ref|YP_022961.1| - 1.9e-05 24.1 0.7 4.1e-05 23.1 0.2 1.7 2 0 0 2 2 2 1 Glycerol-3-phosphate responsive antiterminator Trp_syntA PF00290.20 gi|48477255|ref|YP_022961.1| - 2.8e-05 23.1 0.4 0.00014 20.8 0.2 1.9 2 0 0 2 2 2 1 Tryptophan synthase alpha chain IMPDH PF00478.25 gi|48477255|ref|YP_022961.1| - 5.7e-05 22.3 0.7 0.00032 19.8 0.2 1.9 2 0 0 2 2 2 1 IMP dehydrogenase / GMP reductase domain TMP-TENI PF02581.17 gi|48477255|ref|YP_022961.1| - 0.00027 20.3 0.4 0.0043 16.4 0.2 2.3 2 0 0 2 2 2 1 Thiamine monophosphate synthase BtpA PF03437.15 gi|48477255|ref|YP_022961.1| - 0.00074 19.0 0.5 0.0015 18.1 0.2 1.6 2 0 0 2 2 2 1 BtpA family Dus PF01207.17 gi|48477255|ref|YP_022961.1| - 0.001 18.3 0.1 0.0091 15.1 0.0 2.0 2 0 0 2 2 2 1 Dihydrouridine synthase (Dus) Ribul_P_3_epim PF00834.19 gi|48477255|ref|YP_022961.1| - 0.0013 18.1 0.3 0.0035 16.7 0.2 1.7 2 0 0 2 2 2 1 Ribulose-phosphate 3 epimerase family ThiG PF05690.14 gi|48477255|ref|YP_022961.1| - 0.0057 16.0 0.1 0.01 15.2 0.1 1.4 1 0 0 1 1 1 1 Thiazole biosynthesis protein ThiG NanE PF04131.14 gi|48477255|ref|YP_022961.1| - 0.011 14.9 0.4 0.096 11.9 0.1 2.2 2 0 0 2 2 2 0 Putative N-acetylmannosamine-6-phosphate epimerase Pantoate_transf PF02548.15 gi|48477255|ref|YP_022961.1| - 0.022 14.2 0.1 4.7 6.5 0.0 2.5 2 1 0 2 2 2 0 Ketopantoate hydroxymethyltransferase DHO_dh PF01180.21 gi|48477255|ref|YP_022961.1| - 0.031 13.5 0.3 0.048 12.9 0.3 1.3 1 0 0 1 1 1 0 Dihydroorotate dehydrogenase DUF561 PF04481.12 gi|48477255|ref|YP_022961.1| - 0.056 12.6 0.4 0.31 10.2 0.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF561) FMN_dh PF01070.18 gi|48477255|ref|YP_022961.1| - 0.063 12.3 0.1 0.12 11.4 0.1 1.4 1 0 0 1 1 1 0 FMN-dependent dehydrogenase DpaA_N PF16924.5 gi|48477255|ref|YP_022961.1| - 0.11 12.5 0.0 0.33 11.1 0.0 1.7 1 0 0 1 1 1 0 Dipicolinate synthase subunit A N-terminal domain Oxidored_FMN PF00724.20 gi|48477255|ref|YP_022961.1| - 0.12 11.6 0.0 0.21 10.8 0.0 1.4 1 0 0 1 1 1 0 NADH:flavin oxidoreductase / NADH oxidase family Cyclase PF04199.13 gi|48477256|ref|YP_022962.1| - 8.1e-28 97.4 0.0 1.1e-27 97.0 0.0 1.1 1 0 0 1 1 1 1 Putative cyclase YfhO PF09586.10 gi|48477256|ref|YP_022962.1| - 0.16 10.1 0.1 0.2 9.8 0.1 1.2 1 0 0 1 1 1 0 Bacterial membrane protein YfhO Meth_synt_1 PF08267.12 gi|48477257|ref|YP_022963.1| - 3.3e-05 23.6 0.2 8.5e-05 22.2 0.0 1.6 2 0 0 2 2 2 1 Cobalamin-independent synthase, N-terminal domain Meth_synt_2 PF01717.18 gi|48477258|ref|YP_022964.1| - 1.7e-31 109.7 0.0 5.5e-31 108.0 0.0 1.8 1 1 0 1 1 1 1 Cobalamin-independent synthase, Catalytic domain Peptidase_S8 PF00082.22 gi|48477259|ref|YP_022965.1| - 1e-10 41.4 3.6 1.7e-10 40.6 3.6 1.3 1 0 0 1 1 1 1 Subtilase family fn3 PF00041.21 gi|48477259|ref|YP_022965.1| - 9.2e-06 25.9 1.5 8.3e-05 22.9 0.5 3.0 2 0 0 2 2 2 1 Fibronectin type III domain eRF1_3 PF03465.15 gi|48477261|ref|YP_022967.1| - 6e-17 62.1 0.2 2.4e-15 57.0 0.1 2.8 2 1 0 2 2 2 1 eRF1 domain 3 eRF1_1 PF03463.15 gi|48477261|ref|YP_022967.1| - 1.7e-14 53.9 0.1 2.9e-14 53.2 0.1 1.4 1 0 0 1 1 1 1 eRF1 domain 1 Mut7-C PF01927.16 gi|48477262|ref|YP_022968.1| - 1.1e-25 90.5 0.0 1.2e-25 90.3 0.0 1.0 1 0 0 1 1 1 1 Mut7-C RNAse domain zf-C4_Topoisom PF01396.19 gi|48477262|ref|YP_022968.1| - 0.0019 18.0 3.1 0.11 12.3 0.1 3.2 3 0 0 3 3 3 1 Topoisomerase DNA binding C4 zinc finger DUF2321 PF10083.9 gi|48477262|ref|YP_022968.1| - 0.0027 17.3 0.1 0.0039 16.8 0.1 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2321) DUF5615 PF18480.1 gi|48477262|ref|YP_022968.1| - 0.051 13.3 0.0 0.08 12.7 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF5615) zf-ribbon_3 PF13248.6 gi|48477262|ref|YP_022968.1| - 0.11 11.9 2.2 0.39 10.2 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.6 gi|48477262|ref|YP_022968.1| - 0.11 12.2 5.5 1.4 8.7 5.5 2.2 1 1 0 1 1 1 0 zinc-ribbon domain zinc-ribbons_6 PF07191.12 gi|48477262|ref|YP_022968.1| - 0.13 12.2 2.0 1.8 8.6 0.4 2.7 2 1 0 2 2 2 0 zinc-ribbons DUF35_N PF12172.8 gi|48477262|ref|YP_022968.1| - 0.28 11.1 7.2 4.2 7.3 0.2 3.1 3 0 0 3 3 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Flavoprotein PF02441.19 gi|48477263|ref|YP_022969.1| - 1.9e-29 102.5 0.4 4.6e-29 101.2 0.4 1.5 1 1 0 1 1 1 1 Flavoprotein CofC PF01983.16 gi|48477263|ref|YP_022969.1| - 0.0016 17.7 0.1 0.0039 16.4 0.0 1.6 1 1 0 1 1 1 1 Guanylyl transferase CofC like Semialdhyde_dh PF01118.24 gi|48477263|ref|YP_022969.1| - 0.021 15.3 0.0 0.032 14.7 0.0 1.3 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain Prok-JAB PF14464.6 gi|48477264|ref|YP_022970.1| - 7.4e-09 35.4 0.1 1.8e-08 34.2 0.1 1.7 1 1 0 1 1 1 1 Prokaryotic homologs of the JAB domain RadC PF04002.15 gi|48477264|ref|YP_022970.1| - 0.0051 16.8 0.1 0.0083 16.1 0.1 1.5 1 1 0 1 1 1 1 RadC-like JAB domain NAD_kinase PF01513.21 gi|48477265|ref|YP_022971.1| - 7.5e-45 153.4 2.4 8.9e-45 153.1 2.4 1.2 1 0 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.24 gi|48477265|ref|YP_022971.1| - 0.014 15.0 0.0 0.027 14.1 0.0 1.5 1 0 0 1 1 1 0 Diacylglycerol kinase catalytic domain Adenylsucc_synt PF00709.21 gi|48477266|ref|YP_022972.1| - 1.1e-146 489.1 0.0 1.3e-146 488.9 0.0 1.0 1 0 0 1 1 1 1 Adenylosuccinate synthetase AA_permease_2 PF13520.6 gi|48477267|ref|YP_022973.1| - 3.8e-27 95.2 42.0 3.8e-27 95.2 42.0 2.0 1 1 1 2 2 2 1 Amino acid permease AA_permease PF00324.21 gi|48477267|ref|YP_022973.1| - 5.5e-20 71.4 41.2 5.5e-20 71.4 41.2 2.2 1 1 0 2 2 2 1 Amino acid permease COX7C PF02935.16 gi|48477267|ref|YP_022973.1| - 1.6 9.1 5.4 1 9.7 1.8 2.7 2 0 0 2 2 2 0 Cytochrome c oxidase subunit VIIc LapA_dom PF06305.11 gi|48477267|ref|YP_022973.1| - 6.3 6.7 0.0 6.3 6.7 0.0 6.0 7 1 0 7 7 7 0 Lipopolysaccharide assembly protein A domain FUSC PF04632.12 gi|48477267|ref|YP_022973.1| - 9.8 4.6 6.5 26 3.2 6.5 1.8 1 0 0 1 1 1 0 Fusaric acid resistance protein family CbtA PF09490.10 gi|48477268|ref|YP_022974.1| - 0.029 14.2 8.9 0.048 13.4 0.3 2.8 2 1 1 3 3 3 0 Probable cobalt transporter subunit (CbtA) MtrF PF09472.10 gi|48477268|ref|YP_022974.1| - 0.32 10.4 0.1 0.32 10.4 0.1 3.5 4 1 1 5 5 5 0 Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF) DUF2085 PF09858.9 gi|48477268|ref|YP_022974.1| - 0.69 10.4 9.3 4.2 7.9 1.3 2.7 2 1 0 2 2 2 0 Predicted membrane protein (DUF2085) Phage_holin_8 PF16931.5 gi|48477268|ref|YP_022974.1| - 1.8 8.6 5.5 0.79 9.7 0.3 2.5 1 1 1 2 2 2 0 Putative phage holin Phage_holin_3_6 PF07332.11 gi|48477268|ref|YP_022974.1| - 2.3 8.3 8.1 25 5.0 0.1 2.2 1 1 1 2 2 2 0 Putative Actinobacterial Holin-X, holin superfamily III DUF2407_C PF13373.6 gi|48477268|ref|YP_022974.1| - 6.4 7.0 7.9 0.84 9.8 0.7 2.6 3 0 0 3 3 3 0 DUF2407 C-terminal domain PQQ PF01011.21 gi|48477269|ref|YP_022975.1| - 4.2e-17 61.2 10.0 0.022 14.7 0.1 7.0 7 0 0 7 7 7 5 PQQ enzyme repeat PQQ_2 PF13360.6 gi|48477269|ref|YP_022975.1| - 8.1e-17 61.6 0.0 2.8e-10 40.2 0.0 3.4 1 1 2 3 3 3 3 PQQ-like domain PQQ_3 PF13570.6 gi|48477269|ref|YP_022975.1| - 8.1e-11 42.1 4.2 0.011 16.2 0.0 6.1 6 1 1 7 7 7 3 PQQ-like domain SMC_ScpB PF04079.16 gi|48477270|ref|YP_022976.1| - 6.3e-06 25.9 0.0 9.3e-06 25.4 0.0 1.3 1 1 0 1 1 1 1 Segregation and condensation complex subunit ScpB MarR_2 PF12802.7 gi|48477270|ref|YP_022976.1| - 4e-05 23.4 0.0 5.8e-05 22.9 0.0 1.3 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|48477270|ref|YP_022976.1| - 0.00087 19.1 0.3 0.0038 17.1 0.0 2.1 2 1 1 3 3 3 1 Sugar-specific transcriptional regulator TrmB DUF2582 PF10771.9 gi|48477270|ref|YP_022976.1| - 0.0086 16.2 0.1 0.016 15.4 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix domain (DUF2582) TFIIE_alpha PF02002.17 gi|48477270|ref|YP_022976.1| - 0.011 15.5 0.8 0.029 14.2 0.8 1.6 1 1 0 1 1 1 0 TFIIE alpha subunit DUF4279 PF14106.6 gi|48477270|ref|YP_022976.1| - 0.036 14.3 0.5 0.058 13.6 0.4 1.5 1 1 1 2 2 2 0 Domain of unknown function (DUF4279) DUF3918 PF13056.6 gi|48477270|ref|YP_022976.1| - 0.04 13.5 0.1 0.07 12.8 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3918) Rrf2 PF02082.20 gi|48477270|ref|YP_022976.1| - 0.043 14.2 0.0 0.1 12.9 0.0 1.7 1 1 0 1 1 1 0 Transcriptional regulator Osmo_CC PF08946.10 gi|48477270|ref|YP_022976.1| - 0.069 13.4 3.8 0.1 12.9 2.5 1.9 2 0 0 2 2 2 0 Osmosensory transporter coiled coil HTH_Crp_2 PF13545.6 gi|48477270|ref|YP_022976.1| - 0.087 12.8 0.0 0.26 11.3 0.0 1.9 1 1 0 1 1 1 0 Crp-like helix-turn-helix domain YvrJ PF12841.7 gi|48477270|ref|YP_022976.1| - 0.18 11.4 2.2 0.58 9.7 0.9 2.2 2 0 0 2 2 2 0 YvrJ protein family UPF0147 PF03685.13 gi|48477271|ref|YP_022977.1| - 3.4e-33 113.5 0.1 3.8e-33 113.4 0.1 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0147) UPF0253 PF06786.12 gi|48477271|ref|YP_022977.1| - 0.018 15.3 0.2 7.7 6.9 0.0 2.2 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0253) DUF5405 PF17399.2 gi|48477271|ref|YP_022977.1| - 0.032 14.5 0.0 0.042 14.1 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF5405) AsnC_trans_reg PF01037.21 gi|48477272|ref|YP_022978.1| - 9.9e-20 70.3 0.1 1.3e-19 70.0 0.1 1.2 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain GYD PF08734.11 gi|48477272|ref|YP_022978.1| - 0.023 14.6 0.0 0.026 14.4 0.0 1.2 1 0 0 1 1 1 0 GYD domain HHH_2 PF12826.7 gi|48477272|ref|YP_022978.1| - 0.03 14.4 0.6 2 8.5 0.1 2.4 2 0 0 2 2 2 0 Helix-hairpin-helix motif ABC_tran PF00005.27 gi|48477273|ref|YP_022979.1| - 2.1e-26 93.0 0.0 3.2e-26 92.5 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|48477273|ref|YP_022979.1| - 7.4e-15 55.5 1.4 1.3e-06 28.5 0.4 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|48477273|ref|YP_022979.1| - 2.4e-05 24.9 1.2 4.1e-05 24.2 1.1 1.5 1 1 0 1 1 1 1 AAA domain ATPase_2 PF01637.18 gi|48477273|ref|YP_022979.1| - 0.00049 20.1 0.2 0.0011 18.9 0.0 1.7 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea AAA_15 PF13175.6 gi|48477273|ref|YP_022979.1| - 0.00087 19.1 1.9 0.014 15.1 0.3 2.5 2 1 0 3 3 3 1 AAA ATPase domain SMC_N PF02463.19 gi|48477273|ref|YP_022979.1| - 0.0023 17.4 0.5 0.028 13.8 0.1 2.2 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|48477273|ref|YP_022979.1| - 0.0097 15.6 0.3 0.017 14.8 0.3 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain ATP_bind_1 PF03029.17 gi|48477273|ref|YP_022979.1| - 0.026 14.3 0.0 0.05 13.4 0.0 1.5 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein Rad17 PF03215.15 gi|48477273|ref|YP_022979.1| - 0.034 14.1 0.0 0.068 13.1 0.0 1.6 1 0 0 1 1 1 0 Rad17 P-loop domain AAA PF00004.29 gi|48477273|ref|YP_022979.1| - 0.04 14.4 0.1 0.16 12.4 0.0 2.3 1 1 1 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.6 gi|48477273|ref|YP_022979.1| - 0.043 13.5 0.0 0.088 12.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|48477273|ref|YP_022979.1| - 0.05 13.3 0.1 0.12 12.0 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.6 gi|48477273|ref|YP_022979.1| - 0.051 14.0 0.0 0.096 13.1 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain NTPase_1 PF03266.15 gi|48477273|ref|YP_022979.1| - 0.052 13.4 0.1 1.2 9.0 0.0 2.3 2 0 0 2 2 2 0 NTPase AAA_14 PF13173.6 gi|48477273|ref|YP_022979.1| - 0.059 13.4 0.0 0.16 12.0 0.0 1.8 2 1 1 3 3 3 0 AAA domain cobW PF02492.19 gi|48477273|ref|YP_022979.1| - 0.062 12.9 0.1 0.11 12.1 0.1 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain CbiA PF01656.23 gi|48477273|ref|YP_022979.1| - 0.071 13.2 0.0 0.15 12.1 0.0 1.5 1 0 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain RsgA_GTPase PF03193.16 gi|48477273|ref|YP_022979.1| - 0.074 12.9 0.2 0.17 11.8 0.1 1.6 2 0 0 2 2 2 0 RsgA GTPase AAA_5 PF07728.14 gi|48477273|ref|YP_022979.1| - 0.089 12.8 0.0 0.17 11.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) SRP54 PF00448.22 gi|48477273|ref|YP_022979.1| - 0.1 12.2 0.0 0.29 10.8 0.0 1.7 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain NACHT PF05729.12 gi|48477273|ref|YP_022979.1| - 0.11 12.4 0.1 0.23 11.3 0.1 1.5 1 0 0 1 1 1 0 NACHT domain T2SSE PF00437.20 gi|48477273|ref|YP_022979.1| - 0.12 11.4 0.1 0.27 10.3 0.1 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein Zeta_toxin PF06414.12 gi|48477273|ref|YP_022979.1| - 0.15 11.4 0.0 0.73 9.1 0.0 2.2 3 0 0 3 3 3 0 Zeta toxin AAA_22 PF13401.6 gi|48477273|ref|YP_022979.1| - 0.15 12.4 0.0 0.93 9.8 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_13 PF13166.6 gi|48477273|ref|YP_022979.1| - 0.16 10.6 1.2 0.2 10.2 0.1 1.7 2 0 0 2 2 2 0 AAA domain PrkA PF06798.12 gi|48477273|ref|YP_022979.1| - 0.18 11.4 0.0 0.28 10.8 0.0 1.3 1 0 0 1 1 1 0 PrkA serine protein kinase C-terminal domain 12TM_1 PF09847.9 gi|48477274|ref|YP_022980.1| - 5.8e-145 483.8 94.2 6.7e-145 483.6 94.2 1.0 1 0 0 1 1 1 1 Membrane protein of 12 TMs Sas10_Utp3 PF04000.15 gi|48477274|ref|YP_022980.1| - 0.29 11.8 1.3 0.65 10.7 0.3 2.1 2 0 0 2 2 2 0 Sas10/Utp3/C1D family Ribosomal_S19e PF01090.19 gi|48477275|ref|YP_022981.1| - 2.7e-45 153.4 0.1 3.1e-45 153.2 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S19e BLACT_WH PF17778.1 gi|48477275|ref|YP_022981.1| - 0.0089 16.0 0.4 0.044 13.8 0.0 2.2 2 0 0 2 2 2 1 Beta-lactamase associated winged helix domain dsDNA_bind PF01984.20 gi|48477276|ref|YP_022982.1| - 4.8e-27 94.4 14.8 5.3e-27 94.3 14.8 1.0 1 0 0 1 1 1 1 Double-stranded DNA-binding domain DUF3333 PF11812.8 gi|48477276|ref|YP_022982.1| - 0.028 14.6 0.9 0.031 14.5 0.9 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3333) Selenoprotein_S PF06936.11 gi|48477276|ref|YP_022982.1| - 5.9 6.6 9.5 9.4 6.0 9.5 1.2 1 0 0 1 1 1 0 Selenoprotein S (SelS) Ribosomal_L39 PF00832.20 gi|48477277|ref|YP_022983.1| - 2.9e-21 74.8 10.7 3.6e-21 74.5 10.7 1.1 1 0 0 1 1 1 1 Ribosomal L39 protein PIN_10 PF18478.1 gi|48477277|ref|YP_022983.1| - 0.096 12.9 0.1 0.11 12.8 0.1 1.1 1 0 0 1 1 1 0 PIN like domain Ribosomal_L31e PF01198.19 gi|48477278|ref|YP_022984.1| - 1.3e-06 28.5 0.4 1.6e-06 28.3 0.4 1.1 1 0 0 1 1 1 1 Ribosomal protein L31e DUF3022 PF11226.8 gi|48477278|ref|YP_022984.1| - 0.097 13.1 0.1 0.12 12.9 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3022) eIF-6 PF01912.18 gi|48477279|ref|YP_022985.1| - 3.4e-62 209.3 8.3 4.2e-62 209.1 8.3 1.1 1 0 0 1 1 1 1 eIF-6 family Pribosyltran PF00156.27 gi|48477280|ref|YP_022986.1| - 1e-06 28.4 0.8 2.5e-06 27.1 0.8 1.6 1 1 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|48477280|ref|YP_022986.1| - 0.018 14.5 0.0 0.022 14.2 0.0 1.2 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase Pro-kuma_activ PF09286.11 gi|48477281|ref|YP_022987.1| - 2.1e-20 73.5 0.0 4.7e-20 72.3 0.0 1.6 1 0 0 1 1 1 1 Pro-kumamolisin, activation domain Big_7 PF17957.1 gi|48477281|ref|YP_022987.1| - 1e-08 35.8 3.0 1e-08 35.8 3.0 4.9 5 0 0 5 5 5 1 Bacterial Ig domain Peptidase_S8 PF00082.22 gi|48477281|ref|YP_022987.1| - 3.4e-06 26.5 1.0 8.7e-06 25.2 1.0 1.6 1 0 0 1 1 1 1 Subtilase family TcfC PF16967.5 gi|48477281|ref|YP_022987.1| - 0.044 13.3 0.5 0.14 11.6 0.1 2.2 2 0 0 2 2 2 0 E-set like domain CarboxypepD_reg PF13620.6 gi|48477281|ref|YP_022987.1| - 0.054 13.8 2.1 1.5 9.2 0.4 3.0 2 0 0 2 2 2 0 Carboxypeptidase regulatory-like domain DUF4397 PF14344.6 gi|48477281|ref|YP_022987.1| - 5.2 7.9 13.0 1.4 9.7 0.4 3.9 4 0 0 4 4 4 0 Domain of unknown function (DUF4397) OMPdecase PF00215.24 gi|48477282|ref|YP_022988.1| - 3.7e-26 92.1 0.0 4.8e-26 91.8 0.0 1.1 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family FMN_dh PF01070.18 gi|48477282|ref|YP_022988.1| - 0.015 14.3 0.3 0.13 11.3 0.1 1.9 2 0 0 2 2 2 0 FMN-dependent dehydrogenase Peptidase_S49 PF01343.18 gi|48477283|ref|YP_022989.1| - 1.2e-41 142.3 0.0 1.6e-41 141.8 0.0 1.1 1 0 0 1 1 1 1 Peptidase family S49 CLP_protease PF00574.23 gi|48477283|ref|YP_022989.1| - 0.00012 22.0 0.3 0.00024 21.1 0.3 1.7 1 1 0 1 1 1 1 Clp protease SieB PF14163.6 gi|48477283|ref|YP_022989.1| - 0.055 13.0 0.0 0.21 11.1 0.0 2.0 2 0 0 2 2 2 0 Super-infection exclusion protein B bPH_2 PF03703.14 gi|48477285|ref|YP_022991.1| - 2.4e-05 24.5 0.0 3.3e-05 24.0 0.0 1.3 1 0 0 1 1 1 1 Bacterial PH domain bPH_4 PF06713.11 gi|48477285|ref|YP_022991.1| - 0.014 15.5 0.8 0.038 14.1 0.8 1.7 1 1 0 1 1 1 0 Bacterial PH domain DUF2512 PF10710.9 gi|48477285|ref|YP_022991.1| - 0.015 14.9 4.3 0.022 14.4 4.3 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2512) bPH_5 PF10882.8 gi|48477285|ref|YP_022991.1| - 0.021 14.9 0.1 0.065 13.3 0.1 1.9 1 1 1 2 2 2 0 Bacterial PH domain Prefoldin_3 PF13758.6 gi|48477285|ref|YP_022991.1| - 0.098 12.7 0.1 0.12 12.4 0.1 1.2 1 0 0 1 1 1 0 Prefoldin subunit ABC_tran PF00005.27 gi|48477286|ref|YP_022992.1| - 3.1e-34 118.4 0.1 4.2e-34 118.0 0.1 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|48477286|ref|YP_022992.1| - 5.7e-20 71.6 0.0 1.4e-19 70.4 0.0 1.7 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_22 PF13401.6 gi|48477286|ref|YP_022992.1| - 1.5e-07 31.7 1.3 6.9e-07 29.6 1.3 1.9 1 1 0 1 1 1 1 AAA domain AAA_21 PF13304.6 gi|48477286|ref|YP_022992.1| - 4.8e-06 26.6 1.2 0.0016 18.3 0.1 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_13 PF13166.6 gi|48477286|ref|YP_022992.1| - 0.0001 21.1 0.4 0.038 12.7 0.0 2.1 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.19 gi|48477286|ref|YP_022992.1| - 0.00018 21.0 2.6 0.0049 16.3 0.2 2.2 1 1 1 2 2 2 1 RecF/RecN/SMC N terminal domain ATPase PF06745.13 gi|48477286|ref|YP_022992.1| - 0.0035 16.7 1.1 0.06 12.7 0.1 2.5 2 1 1 3 3 3 1 KaiC NB-ARC PF00931.22 gi|48477286|ref|YP_022992.1| - 0.011 14.9 0.4 0.028 13.6 0.4 1.7 1 1 0 1 1 1 0 NB-ARC domain AAA PF00004.29 gi|48477286|ref|YP_022992.1| - 0.011 16.2 0.5 0.35 11.3 0.1 2.2 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|48477286|ref|YP_022992.1| - 0.014 15.7 0.1 0.028 14.8 0.1 1.6 1 1 0 1 1 1 0 AAA ATPase domain IstB_IS21 PF01695.17 gi|48477286|ref|YP_022992.1| - 0.015 15.0 0.2 4.6 6.9 0.1 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_30 PF13604.6 gi|48477286|ref|YP_022992.1| - 0.029 14.1 0.0 0.06 13.0 0.0 1.5 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|48477286|ref|YP_022992.1| - 0.038 13.7 0.4 0.07 12.9 0.4 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain SbcCD_C PF13558.6 gi|48477286|ref|YP_022992.1| - 0.04 14.2 0.1 0.23 11.7 0.1 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_25 PF13481.6 gi|48477286|ref|YP_022992.1| - 0.11 12.1 0.2 11 5.5 0.1 2.2 2 0 0 2 2 2 0 AAA domain ABC_tran PF00005.27 gi|48477287|ref|YP_022993.1| - 1.1e-25 90.8 0.0 1.6e-25 90.2 0.0 1.3 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|48477287|ref|YP_022993.1| - 8e-17 61.5 0.1 1.4e-16 60.8 0.1 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region SMC_N PF02463.19 gi|48477287|ref|YP_022993.1| - 2.9e-06 26.9 0.1 4.9e-06 26.1 0.1 1.3 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|48477287|ref|YP_022993.1| - 6.4e-06 26.2 4.1 0.00035 20.5 0.3 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|48477287|ref|YP_022993.1| - 1.7e-05 24.5 0.2 3.5e-05 23.4 0.2 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|48477287|ref|YP_022993.1| - 0.00017 21.9 0.4 0.0024 18.2 0.4 2.2 1 1 0 1 1 1 1 AAA domain TniB PF05621.11 gi|48477287|ref|YP_022993.1| - 0.00027 20.4 0.4 0.0049 16.3 0.1 2.3 2 0 0 2 2 2 1 Bacterial TniB protein MMR_HSR1 PF01926.23 gi|48477287|ref|YP_022993.1| - 0.0032 17.5 0.1 0.0064 16.6 0.1 1.6 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_15 PF13175.6 gi|48477287|ref|YP_022993.1| - 0.016 14.9 0.4 1 9.0 0.0 2.2 2 0 0 2 2 2 0 AAA ATPase domain Mg_chelatase PF01078.21 gi|48477287|ref|YP_022993.1| - 0.023 14.1 0.1 0.074 12.4 0.0 1.8 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_16 PF13191.6 gi|48477287|ref|YP_022993.1| - 0.023 15.1 0.0 0.03 14.7 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain NB-ARC PF00931.22 gi|48477287|ref|YP_022993.1| - 0.034 13.3 0.3 0.12 11.6 0.1 1.8 2 0 0 2 2 2 0 NB-ARC domain PRK PF00485.18 gi|48477287|ref|YP_022993.1| - 0.035 13.8 0.0 0.049 13.4 0.0 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family RsgA_GTPase PF03193.16 gi|48477287|ref|YP_022993.1| - 0.037 13.9 0.2 0.067 13.1 0.2 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_18 PF13238.6 gi|48477287|ref|YP_022993.1| - 0.11 13.1 0.3 0.44 11.1 0.3 2.2 1 1 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|48477287|ref|YP_022993.1| - 0.11 12.9 0.4 0.22 12.0 0.4 1.4 1 0 0 1 1 1 0 AAA domain Ploopntkinase3 PF18751.1 gi|48477287|ref|YP_022993.1| - 0.13 12.2 0.0 0.23 11.4 0.0 1.3 1 0 0 1 1 1 0 P-loop Nucleotide Kinase3 IstB_IS21 PF01695.17 gi|48477287|ref|YP_022993.1| - 0.14 11.8 0.5 10 5.8 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein BPD_transp_1 PF00528.22 gi|48477288|ref|YP_022994.1| - 1.6e-26 93.2 13.9 1.6e-26 93.2 13.9 2.0 2 1 1 3 3 3 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|48477288|ref|YP_022994.1| - 0.0038 17.2 0.9 0.0038 17.2 0.9 4.5 4 1 0 4 4 4 1 N-terminal TM domain of oligopeptide transport permease C DUF2976 PF11190.8 gi|48477288|ref|YP_022994.1| - 0.082 12.7 0.2 0.082 12.7 0.2 3.3 3 1 0 3 3 3 0 Protein of unknown function (DUF2976) DUF4750 PF15938.5 gi|48477288|ref|YP_022994.1| - 0.095 12.4 0.5 0.095 12.4 0.5 3.6 5 0 0 5 5 5 0 Domain of unknown function (DUF4750) PIG-P PF08510.12 gi|48477288|ref|YP_022994.1| - 0.44 10.5 4.5 0.16 11.9 0.8 2.2 2 0 0 2 2 2 0 PIG-P BPD_transp_1 PF00528.22 gi|48477289|ref|YP_022995.1| - 2.4e-38 131.7 17.5 2.4e-38 131.7 17.5 2.2 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component DHNA PF04038.12 gi|48477290|ref|YP_022996.1| - 1.6e-35 121.9 0.1 1.8e-35 121.7 0.1 1.0 1 0 0 1 1 1 1 Dihydroneopterin aldolase NTPase_1 PF03266.15 gi|48477291|ref|YP_022997.1| - 5.2e-40 137.1 3.7 5.8e-40 136.9 3.7 1.0 1 0 0 1 1 1 1 NTPase DUF2478 PF10649.9 gi|48477291|ref|YP_022997.1| - 0.0014 18.2 0.0 0.0022 17.6 0.0 1.2 1 1 0 1 1 1 1 Protein of unknown function (DUF2478) AAA_30 PF13604.6 gi|48477291|ref|YP_022997.1| - 0.0035 17.1 0.1 0.0064 16.2 0.1 1.3 1 1 0 1 1 1 1 AAA domain AAA_5 PF07728.14 gi|48477291|ref|YP_022997.1| - 0.016 15.2 0.1 0.03 14.3 0.1 1.5 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 gi|48477291|ref|YP_022997.1| - 0.025 14.9 0.1 0.032 14.5 0.1 1.1 1 0 0 1 1 1 0 AAA domain SRP54 PF00448.22 gi|48477291|ref|YP_022997.1| - 0.046 13.3 1.1 0.17 11.5 0.2 2.0 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain HAUS2 PF15003.6 gi|48477291|ref|YP_022997.1| - 0.11 12.3 1.8 0.14 11.8 1.8 1.3 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 2 TRM PF02005.16 gi|48477292|ref|YP_022998.1| - 4.6e-54 184.0 0.0 2e-53 181.9 0.0 1.8 1 1 1 2 2 2 1 N2,N2-dimethylguanosine tRNA methyltransferase Met_10 PF02475.16 gi|48477292|ref|YP_022998.1| - 0.00066 19.5 0.1 0.001 18.8 0.1 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Cons_hypoth95 PF03602.15 gi|48477292|ref|YP_022998.1| - 0.0025 17.5 0.0 0.0039 16.9 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 DUF2240 PF09999.9 gi|48477293|ref|YP_022999.1| - 2.3e-44 150.5 0.3 2.5e-44 150.4 0.3 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2240) MoCF_biosynth PF00994.24 gi|48477294|ref|YP_023000.1| - 3.9e-33 114.1 0.0 5.1e-33 113.7 0.0 1.1 1 0 0 1 1 1 1 Probable molybdopterin binding domain TFIIE_alpha PF02002.17 gi|48477295|ref|YP_023001.1| - 0.0074 16.1 0.2 0.011 15.5 0.2 1.3 1 0 0 1 1 1 1 TFIIE alpha subunit NTP_transferase PF00483.23 gi|48477296|ref|YP_023002.1| - 8.1e-22 78.0 0.0 1e-21 77.7 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|48477296|ref|YP_023002.1| - 9.4e-06 26.1 0.0 1.4e-05 25.5 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain DUF3023 PF11224.8 gi|48477296|ref|YP_023002.1| - 0.075 12.9 0.2 0.31 10.9 0.2 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3023) Aldedh PF00171.22 gi|48477297|ref|YP_023003.1| - 1.3e-129 432.7 0.0 1.5e-129 432.5 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family MtmB PF05369.12 gi|48477297|ref|YP_023003.1| - 0.1 11.3 0.2 6.2 5.5 0.0 2.1 1 1 0 2 2 2 0 Monomethylamine methyltransferase MtmB Gag_p30 PF02093.16 gi|48477297|ref|YP_023003.1| - 0.15 11.5 0.0 1.2 8.7 0.0 2.0 2 0 0 2 2 2 0 Gag P30 core shell protein tRNA-synt_1b PF00579.25 gi|48477298|ref|YP_023004.1| - 4.8e-50 170.5 0.0 6.1e-50 170.2 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (W and Y) XPG_I PF00867.18 gi|48477300|ref|YP_023006.1| - 1e-27 96.3 0.0 2e-27 95.4 0.0 1.5 1 0 0 1 1 1 1 XPG I-region XPG_N PF00752.17 gi|48477300|ref|YP_023006.1| - 1.3e-19 70.5 0.0 2.4e-19 69.7 0.0 1.5 1 0 0 1 1 1 1 XPG N-terminal domain 5_3_exonuc PF01367.20 gi|48477300|ref|YP_023006.1| - 6.6e-06 26.6 0.5 1.6e-05 25.4 0.0 1.9 2 0 0 2 2 2 1 5'-3' exonuclease, C-terminal SAM fold HHH_5 PF14520.6 gi|48477300|ref|YP_023006.1| - 0.04 14.5 0.8 0.12 12.9 0.1 2.2 2 0 0 2 2 2 0 Helix-hairpin-helix domain Rad51 PF08423.11 gi|48477301|ref|YP_023007.1| - 1.7e-29 102.9 0.0 2.3e-29 102.4 0.0 1.1 1 0 0 1 1 1 1 Rad51 ATPase PF06745.13 gi|48477301|ref|YP_023007.1| - 4.4e-12 45.8 3.6 3.4e-10 39.7 3.6 2.1 1 1 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|48477301|ref|YP_023007.1| - 6.5e-08 32.4 0.0 1e-07 31.7 0.0 1.2 1 0 0 1 1 1 1 AAA domain RecA PF00154.21 gi|48477301|ref|YP_023007.1| - 1.7e-05 24.4 0.1 2.6e-05 23.8 0.1 1.4 1 1 0 1 1 1 1 recA bacterial DNA recombination protein Zot PF05707.12 gi|48477301|ref|YP_023007.1| - 3.7e-05 23.5 0.0 4.4e-05 23.2 0.0 1.2 1 0 0 1 1 1 1 Zonular occludens toxin (Zot) AAA_24 PF13479.6 gi|48477301|ref|YP_023007.1| - 0.00017 21.3 0.0 0.00029 20.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|48477301|ref|YP_023007.1| - 0.0013 18.8 0.0 0.0018 18.3 0.0 1.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|48477301|ref|YP_023007.1| - 0.0049 16.8 0.0 0.0076 16.2 0.0 1.4 1 0 0 1 1 1 1 AAA domain TrwB_AAD_bind PF10412.9 gi|48477301|ref|YP_023007.1| - 0.0056 15.6 0.0 0.0096 14.9 0.0 1.3 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain ATPase_2 PF01637.18 gi|48477301|ref|YP_023007.1| - 0.014 15.4 0.1 0.023 14.6 0.1 1.5 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea PhoH PF02562.16 gi|48477301|ref|YP_023007.1| - 0.096 12.1 0.7 2.8 7.3 0.0 2.4 2 1 0 2 2 2 0 PhoH-like protein Zeta_toxin PF06414.12 gi|48477301|ref|YP_023007.1| - 0.15 11.3 0.0 0.29 10.4 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin NB-ARC PF00931.22 gi|48477301|ref|YP_023007.1| - 0.2 10.8 0.6 0.28 10.3 0.1 1.4 2 0 0 2 2 2 0 NB-ARC domain ABC_tran PF00005.27 gi|48477301|ref|YP_023007.1| - 0.22 12.0 0.8 0.36 11.3 0.7 1.5 1 1 0 1 1 1 0 ABC transporter adh_short_C2 PF13561.6 gi|48477302|ref|YP_023008.1| - 6.9e-59 199.2 0.6 9.5e-59 198.8 0.6 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|48477302|ref|YP_023008.1| - 8.3e-46 155.9 4.9 1.1e-45 155.5 4.9 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|48477302|ref|YP_023008.1| - 2.6e-10 40.5 0.7 6.6e-10 39.2 0.7 1.6 1 1 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|48477302|ref|YP_023008.1| - 3.7e-05 23.3 0.2 5.5e-05 22.7 0.2 1.4 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|48477302|ref|YP_023008.1| - 0.0039 16.2 0.2 0.005 15.9 0.2 1.3 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family MFS_1 PF07690.16 gi|48477303|ref|YP_023009.1| - 6.6e-20 71.3 46.1 9.6e-20 70.8 45.0 1.7 1 1 0 1 1 1 1 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|48477303|ref|YP_023009.1| - 7e-11 41.7 11.6 7e-11 41.7 11.6 2.1 1 1 1 2 2 2 2 Sugar (and other) transporter Presenilin PF01080.17 gi|48477303|ref|YP_023009.1| - 0.0072 15.1 0.3 0.0072 15.1 0.3 2.1 2 0 0 2 2 2 1 Presenilin PRK PF00485.18 gi|48477304|ref|YP_023010.1| - 2.4e-08 34.0 0.0 3.9e-08 33.3 0.0 1.3 1 0 0 1 1 1 1 Phosphoribulokinase / Uridine kinase family Bromo_TP_like PF17027.5 gi|48477304|ref|YP_023010.1| - 0.0068 16.6 1.4 0.013 15.6 0.3 1.9 2 0 0 2 2 2 1 Histone-fold protein CoaE PF01121.20 gi|48477304|ref|YP_023010.1| - 0.032 13.9 0.0 0.053 13.2 0.0 1.4 1 0 0 1 1 1 0 Dephospho-CoA kinase ELP6 PF09807.9 gi|48477304|ref|YP_023010.1| - 0.12 11.8 0.0 0.18 11.2 0.0 1.2 1 0 0 1 1 1 0 Elongation complex protein 6 DUF5461 PF17545.2 gi|48477305|ref|YP_023011.1| - 0.021 15.1 0.6 0.056 13.7 0.6 1.7 1 1 0 1 1 1 0 Family of unknown function (DUF5461) 7TMR-DISM_7TM PF07695.11 gi|48477305|ref|YP_023011.1| - 0.034 14.1 5.2 0.053 13.4 5.2 1.3 1 1 0 1 1 1 0 7TM diverse intracellular signalling Gram_pos_anchor PF00746.21 gi|48477305|ref|YP_023011.1| - 0.12 12.3 0.6 12 6.0 0.2 2.3 2 0 0 2 2 2 0 LPXTG cell wall anchor motif DUF2569 PF10754.9 gi|48477305|ref|YP_023011.1| - 0.19 12.1 6.1 0.23 11.9 6.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2569) DUF2070 PF09843.9 gi|48477305|ref|YP_023011.1| - 1.3 7.2 6.3 1.5 7.1 6.3 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) Ribosomal_L11 PF00298.19 gi|48477306|ref|YP_023012.1| - 0.0025 18.3 0.0 0.0048 17.4 0.0 1.4 1 0 0 1 1 1 1 Ribosomal protein L11, RNA binding domain DUF1206 PF06724.11 gi|48477306|ref|YP_023012.1| - 0.023 14.8 1.7 0.043 13.9 1.7 1.5 1 0 0 1 1 1 0 Domain of Unknown Function (DUF1206) DUF373 PF04123.13 gi|48477306|ref|YP_023012.1| - 0.034 13.6 4.7 0.04 13.4 4.1 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF373) SH3_4 PF06347.13 gi|48477306|ref|YP_023012.1| - 0.041 13.7 0.0 0.072 12.9 0.0 1.3 1 0 0 1 1 1 0 Bacterial SH3 domain SdpI PF13630.6 gi|48477306|ref|YP_023012.1| - 6.1 7.1 7.7 12 6.1 7.7 1.5 1 0 0 1 1 1 0 SdpI/YhfL protein family MTS PF05175.14 gi|48477307|ref|YP_023013.1| - 2.5e-22 79.2 0.0 4.7e-22 78.3 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.13 gi|48477307|ref|YP_023013.1| - 9.1e-11 41.7 1.0 1.6e-10 40.9 1.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_25 PF13649.6 gi|48477307|ref|YP_023013.1| - 4.5e-09 36.9 0.0 1e-08 35.7 0.0 1.7 1 1 1 2 2 2 1 Methyltransferase domain Methyltransf_16 PF10294.9 gi|48477307|ref|YP_023013.1| - 8.3e-08 32.2 0.0 1.5e-07 31.4 0.0 1.4 1 0 0 1 1 1 1 Lysine methyltransferase Methyltransf_31 PF13847.6 gi|48477307|ref|YP_023013.1| - 2.3e-07 30.7 1.2 3.5e-07 30.2 1.2 1.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|48477307|ref|YP_023013.1| - 2.3e-07 30.8 0.0 6.2e-07 29.4 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.16 gi|48477307|ref|YP_023013.1| - 4.3e-07 29.9 0.3 7.1e-07 29.2 0.3 1.3 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_11 PF08241.12 gi|48477307|ref|YP_023013.1| - 3.8e-06 27.5 0.0 8.1e-06 26.4 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain TehB PF03848.14 gi|48477307|ref|YP_023013.1| - 4.1e-06 26.3 0.4 4.1e-06 26.3 0.4 1.9 2 0 0 2 2 2 1 Tellurite resistance protein TehB RrnaAD PF00398.20 gi|48477307|ref|YP_023013.1| - 4.2e-06 26.0 0.0 6.6e-06 25.4 0.0 1.3 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_12 PF08242.12 gi|48477307|ref|YP_023013.1| - 6.8e-06 26.8 0.4 2.3e-05 25.0 0.4 1.9 1 1 0 1 1 1 1 Methyltransferase domain TRM PF02005.16 gi|48477307|ref|YP_023013.1| - 0.0001 21.6 0.2 0.00014 21.2 0.2 1.2 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase DUF43 PF01861.16 gi|48477307|ref|YP_023013.1| - 0.00016 21.0 0.7 0.00016 21.0 0.7 1.6 2 0 0 2 2 2 1 Branched-chain polyamine synthase A C-terminal domain Methyltransf_15 PF09445.10 gi|48477307|ref|YP_023013.1| - 0.00073 19.1 0.2 0.001 18.7 0.2 1.5 1 1 0 1 1 1 1 RNA cap guanine-N2 methyltransferase NodS PF05401.11 gi|48477307|ref|YP_023013.1| - 0.0011 18.6 0.0 0.0017 18.0 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) UPF0020 PF01170.18 gi|48477307|ref|YP_023013.1| - 0.0026 17.5 0.0 0.0036 17.0 0.0 1.3 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Cons_hypoth95 PF03602.15 gi|48477307|ref|YP_023013.1| - 0.0037 16.9 0.0 0.0062 16.2 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 UPF0146 PF03686.13 gi|48477307|ref|YP_023013.1| - 0.0039 17.1 2.3 0.006 16.5 0.9 1.9 1 1 1 2 2 2 1 Uncharacterised protein family (UPF0146) Methyltransf_18 PF12847.7 gi|48477307|ref|YP_023013.1| - 0.0048 16.8 2.2 0.005 16.8 1.2 1.4 2 0 0 2 2 2 1 Methyltransferase domain tRNA_U5-meth_tr PF05958.11 gi|48477307|ref|YP_023013.1| - 0.0071 15.4 0.2 0.011 14.7 0.2 1.2 1 0 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase GidB PF02527.15 gi|48477307|ref|YP_023013.1| - 0.012 15.0 0.1 0.021 14.2 0.1 1.3 1 0 0 1 1 1 0 rRNA small subunit methyltransferase G rRNA_methylase PF06962.12 gi|48477307|ref|YP_023013.1| - 0.02 14.9 0.0 0.032 14.2 0.0 1.3 1 0 0 1 1 1 0 Putative rRNA methylase Methyltransf_4 PF02390.17 gi|48477307|ref|YP_023013.1| - 0.027 13.9 0.2 0.16 11.4 0.1 1.9 2 0 0 2 2 2 0 Putative methyltransferase DREV PF05219.12 gi|48477307|ref|YP_023013.1| - 0.04 13.0 0.0 0.078 12.1 0.0 1.5 1 0 0 1 1 1 0 DREV methyltransferase MetW PF07021.12 gi|48477307|ref|YP_023013.1| - 0.053 13.1 0.0 0.084 12.5 0.0 1.3 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW Eco57I PF07669.11 gi|48477307|ref|YP_023013.1| - 0.066 13.7 0.1 0.12 12.9 0.1 1.5 1 0 0 1 1 1 0 Eco57I restriction-modification methylase Spermine_synth PF01564.17 gi|48477307|ref|YP_023013.1| - 0.085 12.3 3.2 0.23 10.9 3.2 1.8 1 1 0 1 1 1 0 Spermine/spermidine synthase domain PCMT PF01135.19 gi|48477307|ref|YP_023013.1| - 0.1 12.4 0.0 0.12 12.1 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MMR_HSR1 PF01926.23 gi|48477308|ref|YP_023014.1| - 2.9e-25 88.6 0.1 7e-25 87.3 0.1 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase MMR_HSR1_Xtn PF16897.5 gi|48477308|ref|YP_023014.1| - 4e-25 87.9 3.7 9.1e-25 86.7 3.2 1.9 2 0 0 2 2 2 1 C-terminal region of MMR_HSR1 domain TGS PF02824.21 gi|48477308|ref|YP_023014.1| - 4.9e-17 61.7 0.0 1e-16 60.7 0.0 1.6 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.18 gi|48477308|ref|YP_023014.1| - 2e-16 59.9 2.2 1.2e-15 57.4 0.1 2.4 2 1 0 2 2 2 1 Ferrous iron transport protein B RsgA_GTPase PF03193.16 gi|48477308|ref|YP_023014.1| - 2.1e-05 24.5 1.5 0.011 15.6 0.1 2.6 2 0 0 2 2 2 2 RsgA GTPase Dynamin_N PF00350.23 gi|48477308|ref|YP_023014.1| - 2.7e-05 24.3 0.7 0.35 10.9 0.0 2.8 2 1 1 3 3 3 2 Dynamin family Ras PF00071.22 gi|48477308|ref|YP_023014.1| - 0.0013 18.4 0.6 1.5 8.4 0.0 2.6 2 1 0 2 2 2 2 Ras family SRPRB PF09439.10 gi|48477308|ref|YP_023014.1| - 0.0027 17.2 0.1 0.0064 15.9 0.1 1.6 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit GTP_EFTU PF00009.27 gi|48477308|ref|YP_023014.1| - 0.0045 16.6 0.1 1.7 8.1 0.1 3.3 2 1 1 3 3 3 1 Elongation factor Tu GTP binding domain Roc PF08477.13 gi|48477308|ref|YP_023014.1| - 0.012 15.9 0.3 0.065 13.4 0.0 2.4 3 0 0 3 3 3 0 Ras of Complex, Roc, domain of DAPkinase MeaB PF03308.16 gi|48477308|ref|YP_023014.1| - 0.012 14.6 0.7 0.25 10.3 0.0 2.3 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AIG1 PF04548.16 gi|48477308|ref|YP_023014.1| - 0.043 13.1 0.0 0.11 11.8 0.0 1.7 1 0 0 1 1 1 0 AIG1 family NB-ARC PF00931.22 gi|48477308|ref|YP_023014.1| - 0.081 12.1 0.0 0.84 8.8 0.0 2.1 2 0 0 2 2 2 0 NB-ARC domain Acylphosphatase PF00708.18 gi|48477309|ref|YP_023015.1| - 5.6e-19 68.3 0.1 6.5e-19 68.1 0.1 1.1 1 0 0 1 1 1 1 Acylphosphatase MSA-2c PF12238.8 gi|48477309|ref|YP_023015.1| - 0.16 11.9 0.1 0.19 11.7 0.1 1.1 1 0 0 1 1 1 0 Merozoite surface antigen 2c PALP PF00291.25 gi|48477310|ref|YP_023016.1| - 1.2e-82 277.6 0.0 1.4e-82 277.4 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ACT PF01842.25 gi|48477310|ref|YP_023016.1| - 5.1e-07 29.4 0.0 1.1e-06 28.2 0.0 1.6 1 0 0 1 1 1 1 ACT domain ACT_4 PF13291.6 gi|48477310|ref|YP_023016.1| - 1.3e-05 25.6 0.1 3.2e-05 24.4 0.1 1.6 1 0 0 1 1 1 1 ACT domain AAA_23 PF13476.6 gi|48477311|ref|YP_023017.1| - 7.5e-17 62.5 104.1 2.2e-05 25.1 79.0 6.5 1 1 1 2 2 1 1 AAA domain SMC_N PF02463.19 gi|48477311|ref|YP_023017.1| - 6.1e-16 58.5 45.0 2.8e-14 53.1 45.0 2.7 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|48477311|ref|YP_023017.1| - 7.4e-09 35.2 0.0 1.5e-08 34.2 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_27 PF13514.6 gi|48477311|ref|YP_023017.1| - 4.2e-07 29.8 0.0 1.9e-06 27.6 0.0 2.2 1 0 0 1 1 1 1 AAA domain Rad50_zn_hook PF04423.14 gi|48477311|ref|YP_023017.1| - 4.9e-06 26.3 0.0 4.9e-06 26.3 0.0 7.1 7 1 1 8 8 8 1 Rad50 zinc hook motif AAA_15 PF13175.6 gi|48477311|ref|YP_023017.1| - 2.6e-05 24.1 121.3 0.0017 18.1 60.1 4.3 1 1 0 2 2 2 1 AAA ATPase domain SbcCD_C PF13558.6 gi|48477311|ref|YP_023017.1| - 4.2e-05 23.7 0.1 0.00013 22.1 0.0 1.8 2 0 0 2 2 1 1 Putative exonuclease SbcCD, C subunit AAA_13 PF13166.6 gi|48477311|ref|YP_023017.1| - 0.00045 19.0 82.1 0.0026 16.5 22.0 5.1 1 1 3 4 4 4 3 AAA domain PI3K_P85_iSH2 PF16454.5 gi|48477311|ref|YP_023017.1| - 0.0018 17.9 8.4 0.0018 17.9 8.4 6.0 3 1 3 6 6 6 2 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain DUF2203 PF09969.9 gi|48477311|ref|YP_023017.1| - 0.0018 19.0 33.9 0.2 12.4 1.1 6.8 2 2 5 7 7 7 3 Uncharacterized conserved protein (DUF2203) Rootletin PF15035.6 gi|48477311|ref|YP_023017.1| - 0.0057 16.7 2.1 0.0057 16.7 2.1 5.3 3 1 1 5 5 5 2 Ciliary rootlet component, centrosome cohesion AAA_21 PF13304.6 gi|48477311|ref|YP_023017.1| - 0.024 14.5 45.9 0.0075 16.1 9.3 4.7 2 2 1 4 4 4 0 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|48477311|ref|YP_023017.1| - 0.042 14.2 0.1 0.39 11.1 0.0 2.5 2 1 0 2 2 2 0 AAA ATPase domain DUF4407 PF14362.6 gi|48477311|ref|YP_023017.1| - 0.067 12.5 30.3 0.17 11.2 1.4 4.0 1 1 3 4 4 4 0 Domain of unknown function (DUF4407) zf-Di19 PF05605.12 gi|48477311|ref|YP_023017.1| - 0.13 12.6 0.0 0.24 11.7 0.0 1.4 1 0 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding AAA_22 PF13401.6 gi|48477311|ref|YP_023017.1| - 0.26 11.6 3.9 2.6 8.3 0.0 3.5 3 0 0 3 3 3 0 AAA domain RsgA_GTPase PF03193.16 gi|48477311|ref|YP_023017.1| - 0.27 11.1 6.2 0.31 10.9 0.0 3.8 4 0 0 4 4 4 0 RsgA GTPase FliD_N PF02465.18 gi|48477311|ref|YP_023017.1| - 0.5 11.1 39.9 0.98 10.2 0.2 8.1 3 3 3 6 6 6 0 Flagellar hook-associated protein 2 N-terminus TerY_C PF15616.6 gi|48477311|ref|YP_023017.1| - 0.57 10.3 3.4 7.4 6.7 0.0 3.1 2 0 0 2 2 2 0 TerY-C metal binding domain Spc7 PF08317.11 gi|48477311|ref|YP_023017.1| - 0.85 8.4 69.7 0.081 11.8 11.6 5.0 2 2 3 5 5 5 0 Spc7 kinetochore protein DASH_Dam1 PF08653.10 gi|48477311|ref|YP_023017.1| - 1 9.2 20.4 2.5 8.0 0.1 7.2 6 1 1 7 7 7 0 DASH complex subunit Dam1 T3SSipB PF16535.5 gi|48477311|ref|YP_023017.1| - 1.6 9.2 21.1 0.78 10.2 1.3 5.9 5 1 1 6 6 6 0 Type III cell invasion protein SipB Baculo_PEP_C PF04513.12 gi|48477311|ref|YP_023017.1| - 5.9 6.9 45.0 0.33 11.0 5.8 6.6 2 2 2 5 5 5 0 Baculovirus polyhedron envelope protein, PEP, C terminus TolA_bind_tri PF16331.5 gi|48477311|ref|YP_023017.1| - 7.9 6.6 23.6 0.09 12.9 0.5 6.6 6 2 2 8 8 6 0 TolA binding protein trimerisation NPV_P10 PF05531.12 gi|48477311|ref|YP_023017.1| - 9.9 6.7 41.9 3.6 8.1 0.9 8.1 3 1 3 7 7 7 0 Nucleopolyhedrovirus P10 protein Metallophos PF00149.28 gi|48477312|ref|YP_023018.1| - 5.7e-12 46.6 5.5 1.1e-11 45.6 5.5 1.6 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|48477312|ref|YP_023018.1| - 5.3e-09 36.5 0.2 1.1e-08 35.4 0.2 1.5 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain DUF3800 PF12686.7 gi|48477312|ref|YP_023018.1| - 0.2 12.3 2.9 0.85 10.3 0.2 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF3800) DUF87 PF01935.17 gi|48477313|ref|YP_023019.1| - 8e-43 147.1 0.4 2.4e-42 145.6 0.3 1.9 2 0 0 2 2 2 1 Helicase HerA, central domain HAS-barrel PF09378.10 gi|48477313|ref|YP_023019.1| - 2.1e-14 53.4 0.5 2.1e-13 50.3 0.1 2.6 2 0 0 2 2 2 1 HAS barrel domain T4SS-DNA_transf PF02534.14 gi|48477313|ref|YP_023019.1| - 9.3e-07 28.0 0.2 1.8e-06 27.0 0.0 1.5 2 0 0 2 2 2 1 Type IV secretory system Conjugative DNA transfer DUF853 PF05872.12 gi|48477313|ref|YP_023019.1| - 2.4e-06 26.5 0.1 0.011 14.4 0.0 2.1 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) TrwB_AAD_bind PF10412.9 gi|48477313|ref|YP_023019.1| - 2.4e-05 23.5 0.2 0.0018 17.3 0.1 2.2 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain Zot PF05707.12 gi|48477313|ref|YP_023019.1| - 0.0019 17.9 0.1 0.0093 15.6 0.0 2.1 2 0 0 2 2 2 1 Zonular occludens toxin (Zot) ResIII PF04851.15 gi|48477313|ref|YP_023019.1| - 0.0033 17.4 0.0 0.065 13.2 0.0 2.3 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit FtsK_SpoIIIE PF01580.18 gi|48477313|ref|YP_023019.1| - 0.0037 16.7 0.1 0.54 9.6 0.0 2.3 2 0 0 2 2 2 1 FtsK/SpoIIIE family AAA_10 PF12846.7 gi|48477313|ref|YP_023019.1| - 0.011 14.7 0.0 0.15 11.0 0.0 2.1 2 0 0 2 2 2 0 AAA-like domain AAA PF00004.29 gi|48477313|ref|YP_023019.1| - 0.019 15.4 0.4 0.14 12.6 0.0 2.5 3 0 0 3 3 3 0 ATPase family associated with various cellular activities (AAA) Zeta_toxin PF06414.12 gi|48477313|ref|YP_023019.1| - 0.024 13.9 0.0 0.063 12.5 0.0 1.6 1 0 0 1 1 1 0 Zeta toxin Helicase_RecD PF05127.14 gi|48477313|ref|YP_023019.1| - 0.072 12.9 0.0 0.15 11.9 0.0 1.5 1 0 0 1 1 1 0 Helicase UDPG_MGDP_dh_C PF03720.15 gi|48477313|ref|YP_023019.1| - 0.078 13.4 0.0 0.21 12.0 0.0 1.7 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NurA PF09376.10 gi|48477314|ref|YP_023020.1| - 1.9e-25 89.9 1.7 1.9e-25 89.9 1.7 2.1 2 1 0 2 2 2 1 NurA domain Peptidase_M50 PF02163.22 gi|48477315|ref|YP_023021.1| - 6.8e-13 48.5 5.7 8.4e-06 25.2 0.3 2.6 1 1 1 2 2 2 2 Peptidase family M50 Ribosomal_S13_N PF08069.12 gi|48477316|ref|YP_023022.1| - 1.7e-25 88.9 4.3 2.8e-25 88.1 4.3 1.4 1 0 0 1 1 1 1 Ribosomal S13/S15 N-terminal domain Ribosomal_S15 PF00312.22 gi|48477316|ref|YP_023022.1| - 1.6e-08 34.6 2.2 2.7e-08 33.9 2.2 1.3 1 0 0 1 1 1 1 Ribosomal protein S15 DHHA1 PF02272.19 gi|48477317|ref|YP_023023.1| - 6.6e-16 59.0 0.0 1.4e-15 57.9 0.0 1.6 1 0 0 1 1 1 1 DHHA1 domain DHH PF01368.20 gi|48477317|ref|YP_023023.1| - 2.5e-06 27.7 0.0 5.2e-06 26.6 0.0 1.5 1 0 0 1 1 1 1 DHH family M20_dimer PF07687.14 gi|48477318|ref|YP_023024.1| - 1.7e-07 31.1 0.1 5.8e-07 29.4 0.0 1.9 2 0 0 2 2 2 1 Peptidase dimerisation domain Peptidase_S66 PF02016.15 gi|48477319|ref|YP_023025.1| - 1.9e-39 134.5 0.0 2.8e-39 134.0 0.0 1.3 1 0 0 1 1 1 1 LD-carboxypeptidase N-terminal domain Peptidase_S66C PF17676.1 gi|48477319|ref|YP_023025.1| - 2.6e-27 95.8 0.0 4e-27 95.2 0.0 1.3 1 0 0 1 1 1 1 LD-carboxypeptidase C-terminal domain Aminotran_3 PF00202.21 gi|48477320|ref|YP_023026.1| - 1.5e-65 221.5 0.0 1.9e-65 221.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.21 gi|48477320|ref|YP_023026.1| - 0.0033 16.6 0.0 0.0047 16.1 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II Porphobil_deam PF01379.20 gi|48477321|ref|YP_023027.1| - 3.2e-69 232.5 0.1 4.1e-69 232.2 0.1 1.1 1 0 0 1 1 1 1 Porphobilinogen deaminase, dipyromethane cofactor binding domain Porphobil_deamC PF03900.15 gi|48477321|ref|YP_023027.1| - 1.1e-05 25.7 0.0 0.00015 22.0 0.0 2.7 3 0 0 3 3 3 1 Porphobilinogen deaminase, C-terminal domain HEM4 PF02602.15 gi|48477322|ref|YP_023028.1| - 1.9e-20 73.2 0.0 2.5e-20 72.8 0.0 1.1 1 0 0 1 1 1 1 Uroporphyrinogen-III synthase HemD IMS_HHH PF11798.8 gi|48477322|ref|YP_023028.1| - 0.0061 16.8 0.2 3.5 8.1 0.0 2.6 2 0 0 2 2 2 2 IMS family HHH motif KH_1 PF00013.29 gi|48477323|ref|YP_023029.1| - 4.9e-11 42.3 5.3 5.1e-05 23.0 1.0 2.5 2 0 0 2 2 2 2 KH domain KH_4 PF13083.6 gi|48477323|ref|YP_023029.1| - 0.00014 21.6 0.7 0.047 13.6 0.1 2.6 2 0 0 2 2 2 2 KH domain KH_2 PF07650.17 gi|48477323|ref|YP_023029.1| - 0.0014 18.4 3.5 0.1 12.5 0.5 2.5 2 0 0 2 2 2 2 KH domain RIO1 PF01163.22 gi|48477324|ref|YP_023030.1| - 1.4e-59 200.9 0.2 2e-59 200.3 0.2 1.2 1 0 0 1 1 1 1 RIO1 family Pkinase PF00069.25 gi|48477324|ref|YP_023030.1| - 0.00046 19.6 0.0 0.00071 19.0 0.0 1.3 1 0 0 1 1 1 1 Protein kinase domain APH PF01636.23 gi|48477324|ref|YP_023030.1| - 0.019 14.9 0.0 0.37 10.7 0.0 2.2 1 1 1 2 2 2 0 Phosphotransferase enzyme family Kinase-PolyVal PF18762.1 gi|48477324|ref|YP_023030.1| - 0.027 14.4 0.4 0.38 10.7 0.1 2.2 2 0 0 2 2 2 0 Serine/Threonine/Tyrosine Kinase found in polyvalent proteins Kdo PF06293.14 gi|48477324|ref|YP_023030.1| - 0.032 13.6 0.1 0.48 9.7 0.1 2.1 1 1 0 1 1 1 0 Lipopolysaccharide kinase (Kdo/WaaP) family eIF-1a PF01176.19 gi|48477325|ref|YP_023031.1| - 1.2e-24 85.9 0.6 1.2e-24 85.9 0.6 1.4 2 0 0 2 2 2 1 Translation initiation factor 1A / IF-1 DUF3672 PF12421.8 gi|48477325|ref|YP_023031.1| - 0.065 13.1 0.0 0.082 12.8 0.0 1.2 1 0 0 1 1 1 0 Fibronectin type III protein AA_permease_2 PF13520.6 gi|48477326|ref|YP_023032.1| - 5e-43 147.5 53.8 5e-43 147.5 53.8 2.0 1 1 1 2 2 2 1 Amino acid permease AA_permease PF00324.21 gi|48477326|ref|YP_023032.1| - 1.7e-32 112.7 52.7 1.7e-32 112.7 52.7 2.1 1 1 1 2 2 2 1 Amino acid permease Polysacc_synt_C PF14667.6 gi|48477326|ref|YP_023032.1| - 0.001 19.1 12.3 0.001 19.1 12.3 5.5 5 1 0 5 5 5 1 Polysaccharide biosynthesis C-terminal domain Amdase PF17645.1 gi|48477327|ref|YP_023033.1| - 1.9e-06 27.7 0.0 2.5e-06 27.3 0.0 1.1 1 0 0 1 1 1 1 Arylmalonate decarboxylase MTTB PF06253.11 gi|48477327|ref|YP_023033.1| - 0.012 13.6 0.0 0.018 13.0 0.0 1.2 1 0 0 1 1 1 0 Trimethylamine methyltransferase (MTTB) KH_5 PF13184.6 gi|48477328|ref|YP_023034.1| - 2.1e-12 46.9 0.3 3e-11 43.2 0.1 2.1 2 0 0 2 2 2 1 NusA-like KH domain KH_4 PF13083.6 gi|48477328|ref|YP_023034.1| - 7.2e-05 22.6 0.0 0.00013 21.8 0.0 1.4 1 0 0 1 1 1 1 KH domain KH_2 PF07650.17 gi|48477328|ref|YP_023034.1| - 0.013 15.3 0.5 0.029 14.2 0.1 1.9 2 0 0 2 2 2 0 KH domain RNA_pol_Rpb1_5 PF04998.17 gi|48477329|ref|YP_023035.1| - 4.7e-56 190.2 2.6 4.7e-56 190.2 2.6 2.3 1 1 1 2 2 2 1 RNA polymerase Rpb1, domain 5 RNA_pol_Rpb1_1 PF04997.12 gi|48477330|ref|YP_023036.1| - 2.3e-99 332.7 0.0 3.1e-99 332.2 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 1 RNA_pol_Rpb1_2 PF00623.20 gi|48477330|ref|YP_023036.1| - 5.3e-62 208.9 0.1 8e-62 208.3 0.1 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 2 RNA_pol_Rpb1_3 PF04983.18 gi|48477330|ref|YP_023036.1| - 3.3e-32 111.6 0.0 5.9e-32 110.8 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 3 RNA_pol_Rpb1_4 PF05000.17 gi|48477330|ref|YP_023036.1| - 6.6e-24 83.9 0.0 1.5e-23 82.8 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 4 RNA_pol_Rpb1_5 PF04998.17 gi|48477330|ref|YP_023036.1| - 8.1e-24 84.5 0.0 1.8e-23 83.3 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 Zn-ribbon_8 PF09723.10 gi|48477330|ref|YP_023036.1| - 0.41 10.8 2.8 2.5 8.3 0.0 2.9 3 0 0 3 3 3 0 Zinc ribbon domain RNA_pol_Rpb2_6 PF00562.28 gi|48477331|ref|YP_023037.1| - 8.7e-129 430.0 0.1 1.3e-128 429.4 0.1 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 6 RNA_pol_Rpb2_1 PF04563.15 gi|48477331|ref|YP_023037.1| - 2.7e-32 111.9 0.0 1.2e-30 106.6 0.0 2.4 1 1 0 1 1 1 1 RNA polymerase beta subunit RNA_pol_Rpb2_7 PF04560.20 gi|48477331|ref|YP_023037.1| - 1.4e-25 89.5 0.0 3e-25 88.4 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 7 RNA_pol_Rpb2_3 PF04565.16 gi|48477331|ref|YP_023037.1| - 2.2e-25 88.6 0.1 4.8e-25 87.5 0.1 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 3 RNA_pol_Rpb2_2 PF04561.14 gi|48477331|ref|YP_023037.1| - 2.5e-24 86.0 0.4 6e-24 84.7 0.4 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 2 RNA_pol_Rpb2_4 PF04566.13 gi|48477331|ref|YP_023037.1| - 1.9e-21 76.1 1.1 4.6e-21 74.9 1.1 1.7 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 4 RNA_pol_Rpb2_5 PF04567.17 gi|48477331|ref|YP_023037.1| - 2.9e-12 46.9 0.5 7.2e-12 45.7 0.5 1.7 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 5 OrfB_Zn_ribbon PF07282.11 gi|48477331|ref|YP_023037.1| - 0.021 14.7 2.6 5.1 7.1 0.8 2.6 2 0 0 2 2 2 0 Putative transposase DNA-binding domain Zn_Tnp_IS1595 PF12760.7 gi|48477331|ref|YP_023037.1| - 0.12 12.4 2.9 5.6 7.0 0.3 2.6 2 0 0 2 2 2 0 Transposase zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|48477331|ref|YP_023037.1| - 0.18 11.4 5.8 0.75 9.4 1.7 2.7 2 0 0 2 2 2 0 TFIIB zinc-binding IBR PF01485.21 gi|48477331|ref|YP_023037.1| - 0.2 11.9 1.1 9.4 6.6 0.0 2.4 2 0 0 2 2 2 0 IBR domain, a half RING-finger domain zf-ACC PF17848.1 gi|48477331|ref|YP_023037.1| - 0.42 10.7 1.7 2.8 8.1 0.1 2.9 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain RNA_POL_M_15KD PF02150.16 gi|48477331|ref|YP_023037.1| - 0.59 10.1 5.3 0.15 11.9 0.7 2.4 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit zf-ribbon_3 PF13248.6 gi|48477331|ref|YP_023037.1| - 0.62 9.6 4.5 6 6.4 0.0 3.4 3 0 0 3 3 3 0 zinc-ribbon domain PhnA_Zn_Ribbon PF08274.12 gi|48477331|ref|YP_023037.1| - 0.82 9.7 6.2 0.093 12.7 1.0 2.2 2 0 0 2 2 2 0 PhnA Zinc-Ribbon DNA_ligase_ZBD PF03119.16 gi|48477331|ref|YP_023037.1| - 6.9 6.8 5.6 70 3.6 1.0 3.3 3 0 0 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain RNA_pol_Rpb5_C PF01191.19 gi|48477332|ref|YP_023038.1| - 1.3e-24 85.8 0.4 1.5e-24 85.6 0.4 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb5, C-terminal domain Cast PF10174.9 gi|48477332|ref|YP_023038.1| - 0.012 13.9 0.1 0.013 13.8 0.1 1.0 1 0 0 1 1 1 0 RIM-binding protein of the cytomatrix active zone IF-2B PF01008.17 gi|48477333|ref|YP_023039.1| - 3.1e-76 256.3 0.0 7e-76 255.1 0.0 1.6 1 1 0 1 1 1 1 Initiation factor 2 subunit family tRNA-synt_1b PF00579.25 gi|48477334|ref|YP_023040.1| - 1.1e-33 116.9 0.0 6.6e-21 74.9 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class I (W and Y) REC104 PF17378.2 gi|48477334|ref|YP_023040.1| - 0.023 14.5 0.8 0.043 13.6 0.2 1.7 2 0 0 2 2 2 0 Meiotic recombination protein REC104 DUF302 PF03625.14 gi|48477335|ref|YP_023041.1| - 1.5e-12 47.2 0.1 8.4e-12 44.8 0.0 1.9 2 0 0 2 2 2 1 Domain of unknown function DUF302 Pyr_redox_2 PF07992.14 gi|48477336|ref|YP_023042.1| - 3.6e-48 164.3 0.0 6.6e-48 163.4 0.0 1.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|48477336|ref|YP_023042.1| - 2.1e-17 63.4 0.0 5.5e-17 62.0 0.0 1.8 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.27 gi|48477336|ref|YP_023042.1| - 2.3e-15 56.9 0.0 8.1e-15 55.2 0.0 1.9 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|48477336|ref|YP_023042.1| - 1.6e-07 30.7 0.3 2.1e-06 27.1 0.5 2.4 2 1 0 2 2 2 1 Glucose inhibited division protein A 2-Hacid_dh_C PF02826.19 gi|48477336|ref|YP_023042.1| - 8.6e-05 22.0 2.2 0.031 13.6 0.0 3.9 3 2 2 5 5 5 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain K_oxygenase PF13434.6 gi|48477336|ref|YP_023042.1| - 0.00013 21.3 0.0 0.00034 19.9 0.0 1.7 2 0 0 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) NAD_binding_8 PF13450.6 gi|48477336|ref|YP_023042.1| - 0.00066 19.9 0.3 1.9 8.8 0.0 2.7 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.6 gi|48477336|ref|YP_023042.1| - 0.00088 18.6 5.2 0.0033 16.7 0.0 2.8 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.18 gi|48477336|ref|YP_023042.1| - 0.0049 16.8 0.0 0.021 14.7 0.0 2.0 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_7 PF13241.6 gi|48477336|ref|YP_023042.1| - 0.014 15.8 0.1 0.075 13.5 0.0 2.2 2 1 0 2 2 2 0 Putative NAD(P)-binding HI0933_like PF03486.14 gi|48477336|ref|YP_023042.1| - 0.014 14.1 0.6 1.7 7.3 0.5 2.6 3 0 0 3 3 3 0 HI0933-like protein AlaDh_PNT_C PF01262.21 gi|48477336|ref|YP_023042.1| - 0.027 13.8 0.3 0.32 10.3 0.0 2.3 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain F420_oxidored PF03807.17 gi|48477336|ref|YP_023042.1| - 0.028 15.0 2.1 0.6 10.7 0.0 3.3 3 0 0 3 3 3 0 NADP oxidoreductase coenzyme F420-dependent FAD_binding_2 PF00890.24 gi|48477336|ref|YP_023042.1| - 0.057 12.5 2.0 1.6 7.7 1.2 2.8 2 1 1 3 3 3 0 FAD binding domain NAD_binding_2 PF03446.15 gi|48477336|ref|YP_023042.1| - 0.1 12.8 0.0 0.31 11.2 0.1 1.9 1 1 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_Gly3P_dh_N PF01210.23 gi|48477336|ref|YP_023042.1| - 0.11 12.5 0.0 25 4.8 0.0 3.1 3 0 0 3 3 3 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus TatD_DNase PF01026.21 gi|48477337|ref|YP_023043.1| - 2.7e-10 40.1 0.0 1.2e-09 37.9 0.0 1.8 1 1 0 1 1 1 1 TatD related DNase Sld5 PF05916.11 gi|48477338|ref|YP_023044.1| - 0.021 15.3 0.8 0.053 14.0 0.8 1.7 1 1 0 1 1 1 0 GINS complex protein DUF3781 PF12636.7 gi|48477338|ref|YP_023044.1| - 0.037 13.9 2.9 1.8 8.5 0.3 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF3781) Sec3_C_2 PF15278.6 gi|48477338|ref|YP_023044.1| - 1.8 9.0 6.0 0.38 11.1 0.7 2.3 1 1 0 2 2 2 0 Sec3 exocyst complex subunit E3_UbLigase_RBR PF18091.1 gi|48477339|ref|YP_023045.1| - 0.069 13.3 0.5 0.073 13.2 0.5 1.2 1 0 0 1 1 1 0 E3 Ubiquitin Ligase RBR C-terminal domain THAP PF05485.12 gi|48477339|ref|YP_023045.1| - 0.078 13.9 1.4 0.14 13.1 1.4 1.4 1 1 0 1 1 1 0 THAP domain Glycos_transf_2 PF00535.26 gi|48477340|ref|YP_023046.1| - 9.4e-20 71.1 0.4 2.1e-19 70.0 0.2 1.6 2 0 0 2 2 2 1 Glycosyl transferase family 2 Glyco_tranf_2_2 PF10111.9 gi|48477340|ref|YP_023046.1| - 5.5e-13 49.0 5.6 5.4e-09 35.9 0.2 2.8 2 1 0 2 2 2 2 Glycosyltransferase like family 2 Glyco_tranf_2_3 PF13641.6 gi|48477340|ref|YP_023046.1| - 5.9e-13 49.2 0.0 2.6e-06 27.5 0.0 2.1 1 1 0 2 2 2 2 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 gi|48477340|ref|YP_023046.1| - 0.0065 16.4 0.0 0.17 11.8 0.0 2.2 1 1 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_transf_7C PF02709.14 gi|48477340|ref|YP_023046.1| - 0.0074 15.9 0.2 0.018 14.7 0.1 1.7 1 1 0 1 1 1 1 N-terminal domain of galactosyltransferase MM_CoA_mutase PF01642.22 gi|48477341|ref|YP_023047.1| - 1.5e-219 729.9 0.0 1.8e-219 729.6 0.0 1.0 1 0 0 1 1 1 1 Methylmalonyl-CoA mutase Baculo_PEP_C PF04513.12 gi|48477341|ref|YP_023047.1| - 0.041 13.9 0.0 0.097 12.7 0.0 1.7 2 0 0 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus B12-binding PF02310.19 gi|48477342|ref|YP_023048.1| - 8.1e-19 67.8 0.1 1e-18 67.5 0.1 1.1 1 0 0 1 1 1 1 B12 binding domain Ocnus PF05005.15 gi|48477342|ref|YP_023048.1| - 0.055 13.6 0.0 0.095 12.8 0.0 1.4 1 0 0 1 1 1 0 Janus/Ocnus family (Ocnus) MeaB PF03308.16 gi|48477343|ref|YP_023049.1| - 1.1e-62 211.5 0.1 1.3e-62 211.2 0.1 1.0 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_18 PF13238.6 gi|48477343|ref|YP_023049.1| - 4e-05 24.2 0.0 8.8e-05 23.1 0.0 1.7 1 0 0 1 1 1 1 AAA domain ATP_bind_1 PF03029.17 gi|48477343|ref|YP_023049.1| - 0.00016 21.6 0.1 0.042 13.6 0.0 2.6 2 1 0 2 2 2 1 Conserved hypothetical ATP binding protein RsgA_GTPase PF03193.16 gi|48477343|ref|YP_023049.1| - 0.00022 21.2 0.0 0.014 15.3 0.0 2.2 2 0 0 2 2 2 1 RsgA GTPase NTPase_1 PF03266.15 gi|48477343|ref|YP_023049.1| - 0.0003 20.8 0.1 0.00066 19.6 0.1 1.5 1 0 0 1 1 1 1 NTPase cobW PF02492.19 gi|48477343|ref|YP_023049.1| - 0.0004 20.0 0.5 0.0056 16.3 0.5 2.5 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_22 PF13401.6 gi|48477343|ref|YP_023049.1| - 0.00049 20.4 0.0 0.0016 18.7 0.0 1.8 2 0 0 2 2 2 1 AAA domain Rad17 PF03215.15 gi|48477343|ref|YP_023049.1| - 0.0054 16.7 0.1 0.041 13.8 0.0 2.1 2 0 0 2 2 2 1 Rad17 P-loop domain AAA_5 PF07728.14 gi|48477343|ref|YP_023049.1| - 0.0056 16.7 0.0 0.011 15.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) NB-ARC PF00931.22 gi|48477343|ref|YP_023049.1| - 0.0087 15.3 0.0 0.15 11.2 0.0 2.1 2 0 0 2 2 2 1 NB-ARC domain AAA_16 PF13191.6 gi|48477343|ref|YP_023049.1| - 0.011 16.2 0.0 0.017 15.5 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain ABC_tran PF00005.27 gi|48477343|ref|YP_023049.1| - 0.015 15.8 0.1 0.03 14.8 0.1 1.6 1 0 0 1 1 1 0 ABC transporter MMR_HSR1 PF01926.23 gi|48477343|ref|YP_023049.1| - 0.016 15.2 0.9 0.057 13.5 0.9 2.2 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_30 PF13604.6 gi|48477343|ref|YP_023049.1| - 0.019 14.7 0.0 0.03 14.0 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA PF00004.29 gi|48477343|ref|YP_023049.1| - 0.021 15.3 0.1 0.16 12.4 0.0 2.1 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) CbiA PF01656.23 gi|48477343|ref|YP_023049.1| - 0.021 14.9 0.0 0.038 14.1 0.0 1.4 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain RNA_helicase PF00910.22 gi|48477343|ref|YP_023049.1| - 0.023 15.1 0.1 0.081 13.3 0.0 2.0 2 0 0 2 2 2 0 RNA helicase FeoB_Cyto PF17910.1 gi|48477343|ref|YP_023049.1| - 0.032 14.8 0.1 0.06 13.9 0.1 1.5 1 0 0 1 1 1 0 FeoB cytosolic helical domain PRK PF00485.18 gi|48477343|ref|YP_023049.1| - 0.033 13.9 0.0 0.053 13.3 0.0 1.4 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA_29 PF13555.6 gi|48477343|ref|YP_023049.1| - 0.034 13.9 0.0 0.067 12.9 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain GTP_EFTU PF00009.27 gi|48477343|ref|YP_023049.1| - 0.036 13.6 0.1 0.56 9.7 0.1 2.3 1 1 0 1 1 1 0 Elongation factor Tu GTP binding domain AAA_23 PF13476.6 gi|48477343|ref|YP_023049.1| - 0.044 14.3 0.6 0.54 10.7 0.1 2.1 2 0 0 2 2 2 0 AAA domain SRP54 PF00448.22 gi|48477343|ref|YP_023049.1| - 0.046 13.3 0.0 0.17 11.5 0.0 1.9 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain KAP_NTPase PF07693.14 gi|48477343|ref|YP_023049.1| - 0.047 12.9 0.0 0.059 12.6 0.0 1.2 1 0 0 1 1 1 0 KAP family P-loop domain AAA_24 PF13479.6 gi|48477343|ref|YP_023049.1| - 0.086 12.6 0.1 0.49 10.1 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.6 gi|48477343|ref|YP_023049.1| - 0.13 12.4 0.1 0.21 11.8 0.1 1.3 1 0 0 1 1 1 0 AAA domain CCDC92 PF14916.6 gi|48477343|ref|YP_023049.1| - 0.16 11.8 0.2 0.66 9.8 0.5 1.8 2 0 0 2 2 2 0 Coiled-coil domain of unknown function AAA_19 PF13245.6 gi|48477343|ref|YP_023049.1| - 0.17 12.2 0.0 0.35 11.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_17 PF13207.6 gi|48477343|ref|YP_023049.1| - 0.17 12.3 0.3 0.44 11.0 0.1 1.8 2 1 0 2 2 1 0 AAA domain Mg_chelatase PF01078.21 gi|48477343|ref|YP_023049.1| - 0.18 11.2 0.0 0.29 10.5 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI Chorismate_synt PF01264.21 gi|48477344|ref|YP_023050.1| - 1.4e-110 369.1 0.0 1.5e-110 369.0 0.0 1.0 1 0 0 1 1 1 1 Chorismate synthase BCIP PF13862.6 gi|48477344|ref|YP_023050.1| - 0.043 13.6 0.0 0.062 13.1 0.0 1.2 1 0 0 1 1 1 0 p21-C-terminal region-binding protein DUF2070 PF09843.9 gi|48477345|ref|YP_023051.1| - 7.6e-133 443.8 18.7 8.5e-133 443.6 18.7 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2070) Glyco_trans_1_4 PF13692.6 gi|48477346|ref|YP_023052.1| - 7.2e-14 52.4 0.0 1.7e-13 51.2 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|48477346|ref|YP_023052.1| - 1.9e-05 25.0 0.0 5.8e-05 23.4 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|48477346|ref|YP_023052.1| - 0.001 19.1 0.0 0.0016 18.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Lactamase_B_2 PF12706.7 gi|48477347|ref|YP_023053.1| - 3.1e-19 69.3 0.0 7.2e-19 68.1 0.0 1.5 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|48477347|ref|YP_023053.1| - 3.6e-11 43.4 0.2 6.4e-09 36.1 0.1 2.2 2 0 0 2 2 2 2 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.6 gi|48477347|ref|YP_023053.1| - 0.01 15.7 0.2 0.043 13.7 0.2 2.0 1 1 0 1 1 1 0 Beta-lactamase superfamily domain PDEase_II PF02112.15 gi|48477347|ref|YP_023053.1| - 0.045 12.9 0.1 0.075 12.1 0.1 1.3 1 0 0 1 1 1 0 cAMP phosphodiesterases class-II Lactamase_B_6 PF16661.5 gi|48477347|ref|YP_023053.1| - 0.15 11.5 0.1 0.26 10.7 0.1 1.3 1 0 0 1 1 1 0 Metallo-beta-lactamase superfamily domain HTH_10 PF04967.12 gi|48477348|ref|YP_023054.1| - 1.7e-14 53.3 0.1 2.7e-14 52.7 0.1 1.3 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4 PF04545.16 gi|48477348|ref|YP_023054.1| - 8.5e-07 28.4 0.1 1.8e-06 27.4 0.1 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 CENP-B_N PF04218.13 gi|48477348|ref|YP_023054.1| - 0.075 12.7 0.6 0.075 12.7 0.6 2.2 2 1 0 2 2 2 0 CENP-B N-terminal DNA-binding domain MarR PF01047.22 gi|48477348|ref|YP_023054.1| - 0.088 12.8 0.0 0.15 12.0 0.0 1.5 1 0 0 1 1 1 0 MarR family GerE PF00196.19 gi|48477348|ref|YP_023054.1| - 0.094 12.3 0.3 0.93 9.1 0.3 2.2 1 1 0 1 1 1 0 Bacterial regulatory proteins, luxR family Pyr_excise PF03013.14 gi|48477348|ref|YP_023054.1| - 0.099 12.6 0.4 0.18 11.8 0.4 1.5 1 0 0 1 1 1 0 Pyrimidine dimer DNA glycosylase BCHF PF07284.11 gi|48477349|ref|YP_023055.1| - 0.0093 16.0 0.4 0.011 15.7 0.4 1.1 1 0 0 1 1 1 1 2-vinyl bacteriochlorophyllide hydratase (BCHF) DUF3262 PF11660.8 gi|48477349|ref|YP_023055.1| - 0.019 15.4 0.3 0.043 14.2 0.1 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF3262) Vps55 PF04133.14 gi|48477349|ref|YP_023055.1| - 0.026 14.5 0.0 1.6 8.7 0.0 2.0 2 0 0 2 2 2 0 Vacuolar protein sorting 55 OppC_N PF12911.7 gi|48477349|ref|YP_023055.1| - 0.039 13.9 0.0 0.8 9.7 0.0 2.2 2 0 0 2 2 2 0 N-terminal TM domain of oligopeptide transport permease C DUF3040 PF11239.8 gi|48477349|ref|YP_023055.1| - 0.14 12.5 0.0 0.18 12.1 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3040) DUF983 PF06170.12 gi|48477349|ref|YP_023055.1| - 0.39 11.2 1.9 1.5 9.3 2.0 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF983) Sulf_transp PF04143.14 gi|48477350|ref|YP_023056.1| - 2.2e-22 80.0 25.5 2.2e-22 80.0 25.5 2.2 1 1 1 2 2 2 1 Sulphur transport ATP-synt_C PF00137.21 gi|48477350|ref|YP_023056.1| - 0.023 15.1 4.2 0.023 15.1 4.2 4.7 5 0 0 5 5 5 0 ATP synthase subunit C SOR_SNZ PF01680.17 gi|48477351|ref|YP_023057.1| - 3.7e-93 311.1 2.6 1.3e-90 302.7 2.7 2.1 2 0 0 2 2 2 2 SOR/SNZ family ThiG PF05690.14 gi|48477351|ref|YP_023057.1| - 1.5e-13 50.6 4.0 3.6e-09 36.3 0.1 2.4 2 1 0 2 2 2 2 Thiazole biosynthesis protein ThiG Dus PF01207.17 gi|48477351|ref|YP_023057.1| - 6.5e-05 22.2 0.3 0.093 11.8 0.0 2.4 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) IGPS PF00218.21 gi|48477351|ref|YP_023057.1| - 0.0018 17.5 0.0 0.12 11.5 0.0 2.3 2 0 0 2 2 2 1 Indole-3-glycerol phosphate synthase IMPDH PF00478.25 gi|48477351|ref|YP_023057.1| - 0.0075 15.3 0.0 0.02 13.9 0.0 1.7 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain OMPdecase PF00215.24 gi|48477351|ref|YP_023057.1| - 0.0099 15.5 0.1 0.023 14.3 0.0 1.7 2 0 0 2 2 2 1 Orotidine 5'-phosphate decarboxylase / HUMPS family NMO PF03060.15 gi|48477351|ref|YP_023057.1| - 0.014 14.8 5.6 0.45 9.9 0.0 2.6 2 1 0 2 2 2 0 Nitronate monooxygenase His_biosynth PF00977.21 gi|48477351|ref|YP_023057.1| - 0.026 14.0 0.4 0.21 11.0 0.0 2.2 2 1 0 2 2 2 0 Histidine biosynthesis protein NanE PF04131.14 gi|48477351|ref|YP_023057.1| - 0.031 13.5 1.6 0.18 11.0 0.0 2.7 2 1 0 2 2 2 0 Putative N-acetylmannosamine-6-phosphate epimerase FMN_dh PF01070.18 gi|48477351|ref|YP_023057.1| - 0.042 12.9 0.1 0.1 11.6 0.0 1.7 2 0 0 2 2 2 0 FMN-dependent dehydrogenase Peptidase_S66C PF17676.1 gi|48477351|ref|YP_023057.1| - 0.16 12.5 0.0 0.43 11.1 0.0 1.7 1 0 0 1 1 1 0 LD-carboxypeptidase C-terminal domain DUF92 PF01940.16 gi|48477352|ref|YP_023058.1| - 3.6e-47 160.8 10.8 4.3e-47 160.5 10.8 1.1 1 0 0 1 1 1 1 Integral membrane protein DUF92 SSP160 PF06933.11 gi|48477352|ref|YP_023058.1| - 3.6 5.7 9.1 0.29 9.3 4.5 1.5 2 0 0 2 2 2 0 Special lobe-specific silk protein SSP160 ETF PF01012.21 gi|48477353|ref|YP_023059.1| - 2.6e-31 108.9 0.0 3.4e-31 108.5 0.0 1.1 1 0 0 1 1 1 1 Electron transfer flavoprotein domain DNA_pol3_theta PF06440.11 gi|48477353|ref|YP_023059.1| - 0.028 14.1 0.1 0.13 11.9 0.1 2.1 2 0 0 2 2 2 0 DNA polymerase III, theta subunit ETF_alpha PF00766.19 gi|48477354|ref|YP_023060.1| - 7.2e-32 109.3 0.0 1.2e-31 108.5 0.0 1.4 1 0 0 1 1 1 1 Electron transfer flavoprotein FAD-binding domain ETF PF01012.21 gi|48477354|ref|YP_023060.1| - 3.8e-08 33.4 0.0 6.6e-08 32.7 0.0 1.3 1 0 0 1 1 1 1 Electron transfer flavoprotein domain AMP-binding PF00501.28 gi|48477355|ref|YP_023061.1| - 4e-91 305.7 0.0 4.9e-91 305.4 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|48477355|ref|YP_023061.1| - 3.3e-24 85.7 0.0 7.7e-24 84.5 0.0 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain ACAS_N PF16177.5 gi|48477355|ref|YP_023061.1| - 3.4e-21 74.9 2.4 8.5e-21 73.6 2.4 1.7 1 0 0 1 1 1 1 Acetyl-coenzyme A synthetase N-terminus DUF759 PF05537.11 gi|48477355|ref|YP_023061.1| - 0.071 12.0 0.0 0.11 11.3 0.0 1.2 1 0 0 1 1 1 0 Borrelia burgdorferi protein of unknown function (DUF759) DUF1835 PF08874.10 gi|48477355|ref|YP_023061.1| - 0.13 12.5 0.1 0.54 10.5 0.2 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF1835) YcaO_C PF18381.1 gi|48477355|ref|YP_023061.1| - 0.48 10.3 1.6 3.4 7.5 0.0 2.4 3 0 0 3 3 3 0 YcaO cyclodehydratase C-terminal domain Gpr1_Fun34_YaaH PF01184.19 gi|48477356|ref|YP_023062.1| - 2e-42 145.2 25.2 2.6e-42 144.8 25.2 1.1 1 0 0 1 1 1 1 GPR1/FUN34/yaaH family Lig_chan PF00060.26 gi|48477356|ref|YP_023062.1| - 0.09 12.6 4.0 0.16 11.8 4.0 1.5 1 0 0 1 1 1 0 Ligand-gated ion channel DUF3533 PF12051.8 gi|48477356|ref|YP_023062.1| - 6.7 5.5 12.8 12 4.6 12.8 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3533) DrsE PF02635.15 gi|48477358|ref|YP_023064.1| - 6.1e-13 49.2 0.1 7.5e-13 48.9 0.1 1.0 1 0 0 1 1 1 1 DsrE/DsrF-like family FHA PF00498.26 gi|48477359|ref|YP_023065.1| - 2.3e-17 63.1 0.0 4.1e-17 62.3 0.0 1.4 1 0 0 1 1 1 1 FHA domain Yop-YscD_cpl PF16697.5 gi|48477359|ref|YP_023065.1| - 2.8e-09 37.2 0.0 5.1e-09 36.3 0.0 1.3 1 0 0 1 1 1 1 Inner membrane component of T3SS, cytoplasmic domain zinc_ribbon_2 PF13240.6 gi|48477359|ref|YP_023065.1| - 0.00019 21.0 3.9 0.00043 19.9 3.9 1.6 1 0 0 1 1 1 1 zinc-ribbon domain zf-RanBP PF00641.18 gi|48477359|ref|YP_023065.1| - 0.00023 20.4 2.0 0.00041 19.6 2.0 1.3 1 0 0 1 1 1 1 Zn-finger in Ran binding protein and others DZR PF12773.7 gi|48477359|ref|YP_023065.1| - 0.0083 16.1 0.7 0.015 15.4 0.7 1.3 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|48477359|ref|YP_023065.1| - 0.015 14.7 1.3 0.027 13.9 1.3 1.5 1 0 0 1 1 1 0 zinc-ribbon domain Vps36-NZF-N PF16988.5 gi|48477359|ref|YP_023065.1| - 0.027 13.9 3.0 0.072 12.5 3.0 1.8 1 0 0 1 1 1 0 Vacuolar protein sorting 36 NZF-N zinc-finger domain zf-Sec23_Sec24 PF04810.15 gi|48477359|ref|YP_023065.1| - 0.029 14.4 0.4 0.065 13.3 0.4 1.6 1 0 0 1 1 1 0 Sec23/Sec24 zinc finger Metallophos PF00149.28 gi|48477360|ref|YP_023066.1| - 7.4e-30 105.0 1.9 9.5e-30 104.6 1.9 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|48477360|ref|YP_023066.1| - 1.5e-06 28.5 0.0 2.1e-06 28.1 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain ArnB_C PF18677.1 gi|48477361|ref|YP_023067.1| - 7.8e-31 106.0 6.5 2.3e-30 104.5 6.5 1.9 1 1 0 1 1 1 1 Archaellum regulatory network B, C-terminal domain VWA PF00092.28 gi|48477361|ref|YP_023067.1| - 1e-15 58.5 0.0 2.2e-15 57.3 0.0 1.5 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_2 PF13519.6 gi|48477361|ref|YP_023067.1| - 2.9e-14 53.6 0.0 8.5e-14 52.1 0.0 1.8 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_3 PF13768.6 gi|48477361|ref|YP_023067.1| - 3.9e-10 39.9 0.0 8.6e-10 38.8 0.0 1.5 1 0 0 1 1 1 1 von Willebrand factor type A domain Sec23_trunk PF04811.15 gi|48477361|ref|YP_023067.1| - 2.9e-05 23.8 0.0 0.0028 17.3 0.0 2.2 2 0 0 2 2 2 2 Sec23/Sec24 trunk domain PEGA PF08308.11 gi|48477362|ref|YP_023068.1| - 9.5e-06 25.4 2.0 9.5e-06 25.4 2.0 2.2 2 0 0 2 2 2 1 PEGA domain DUF35_N PF12172.8 gi|48477362|ref|YP_023068.1| - 0.0005 19.9 0.3 0.00081 19.2 0.3 1.3 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-C3HC4_2 PF13923.6 gi|48477362|ref|YP_023068.1| - 0.046 13.6 0.6 0.09 12.6 0.6 1.4 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) CarboxypepD_reg PF13620.6 gi|48477362|ref|YP_023068.1| - 0.12 12.7 0.5 0.29 11.4 0.1 1.8 2 0 0 2 2 2 0 Carboxypeptidase regulatory-like domain CarbopepD_reg_2 PF13715.6 gi|48477362|ref|YP_023068.1| - 0.21 11.6 4.5 0.098 12.7 1.3 2.1 2 0 0 2 2 2 0 CarboxypepD_reg-like domain zf-C3HC4_3 PF13920.6 gi|48477362|ref|YP_023068.1| - 0.28 11.1 2.0 0.49 10.3 2.0 1.3 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) Rubredoxin_2 PF18073.1 gi|48477362|ref|YP_023068.1| - 0.32 10.8 1.1 0.59 9.9 1.1 1.4 1 0 0 1 1 1 0 Rubredoxin metal binding domain Castor1_N PF18700.1 gi|48477362|ref|YP_023068.1| - 0.44 10.4 2.2 1.4 8.8 0.0 2.9 3 0 0 3 3 3 0 Cytosolic arginine sensor for mTORC1 subunit 1 N-terminal domain DNA_RNApol_7kD PF03604.13 gi|48477362|ref|YP_023068.1| - 3.1 7.5 6.6 0.39 10.5 0.2 2.6 3 0 0 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit AAA_22 PF13401.6 gi|48477363|ref|YP_023069.1| - 3.3e-06 27.4 0.1 0.03 14.6 0.0 2.7 2 1 0 2 2 2 2 AAA domain AAA_10 PF12846.7 gi|48477363|ref|YP_023069.1| - 0.00037 19.5 0.7 0.56 9.1 0.0 2.2 2 0 0 2 2 2 2 AAA-like domain AAA_16 PF13191.6 gi|48477363|ref|YP_023069.1| - 0.00037 20.9 0.0 0.0019 18.6 0.0 2.1 2 1 0 2 2 2 1 AAA ATPase domain ATPase_2 PF01637.18 gi|48477363|ref|YP_023069.1| - 0.0022 17.9 1.6 0.073 13.0 1.6 2.6 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea RNA_helicase PF00910.22 gi|48477363|ref|YP_023069.1| - 0.0031 17.9 0.7 0.11 12.9 0.1 2.7 2 0 0 2 2 2 1 RNA helicase FtsK_SpoIIIE PF01580.18 gi|48477363|ref|YP_023069.1| - 0.0038 16.6 0.0 0.0074 15.7 0.0 1.4 1 0 0 1 1 1 1 FtsK/SpoIIIE family AAA PF00004.29 gi|48477363|ref|YP_023069.1| - 0.0075 16.7 0.2 0.22 11.9 0.0 2.5 1 1 1 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.6 gi|48477363|ref|YP_023069.1| - 0.018 14.8 0.0 0.047 13.4 0.0 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF815 PF05673.13 gi|48477363|ref|YP_023069.1| - 0.053 12.7 0.0 0.14 11.3 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF815) MCM PF00493.23 gi|48477363|ref|YP_023069.1| - 0.086 11.9 0.8 0.43 9.6 0.0 2.4 3 0 0 3 3 3 0 MCM P-loop domain DUF87 PF01935.17 gi|48477363|ref|YP_023069.1| - 0.091 12.8 3.5 3.7 7.6 0.0 3.4 3 0 0 3 3 3 0 Helicase HerA, central domain AAA_18 PF13238.6 gi|48477363|ref|YP_023069.1| - 0.11 13.0 0.0 0.39 11.3 0.0 2.0 1 0 0 1 1 1 0 AAA domain Laminin_II PF06009.12 gi|48477364|ref|YP_023070.1| - 0.037 14.0 1.2 0.46 10.5 0.7 2.2 1 1 1 2 2 2 0 Laminin Domain II DUF1664 PF07889.12 gi|48477364|ref|YP_023070.1| - 0.048 13.7 0.6 12 5.9 0.1 2.6 2 1 1 3 3 3 0 Protein of unknown function (DUF1664) DUF2642 PF10842.8 gi|48477364|ref|YP_023070.1| - 0.058 13.2 3.6 0.44 10.4 0.1 3.6 2 1 2 4 4 4 0 Protein of unknown function (DUF2642) DUF948 PF06103.11 gi|48477364|ref|YP_023070.1| - 6.5 7.1 13.6 0.48 10.7 0.4 3.4 2 1 1 3 3 3 0 Bacterial protein of unknown function (DUF948) PNGaseA PF12222.8 gi|48477365|ref|YP_023071.1| - 3.4e-14 52.6 12.4 3.1e-12 46.1 12.1 2.4 1 1 0 1 1 1 1 Peptide N-acetyl-beta-D-glucosaminyl asparaginase amidase A DUF2079 PF09852.9 gi|48477366|ref|YP_023072.1| - 1.1e-30 106.9 24.9 1.1e-30 106.9 24.9 2.4 3 0 0 3 3 3 1 Predicted membrane protein (DUF2079) Glycos_transf_1 PF00534.20 gi|48477367|ref|YP_023073.1| - 5e-20 71.7 0.0 1.2e-19 70.6 0.0 1.6 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|48477367|ref|YP_023073.1| - 5.2e-14 52.8 0.0 8.2e-14 52.2 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 DUF3944 PF13099.6 gi|48477367|ref|YP_023073.1| - 0.01 15.7 0.0 0.39 10.6 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF3944) Glyco_trans_1_2 PF13524.6 gi|48477367|ref|YP_023073.1| - 0.064 13.7 0.0 0.12 12.7 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferases group 1 Methyltransf_21 PF05050.12 gi|48477368|ref|YP_023074.1| - 2.1e-09 37.6 0.3 5.3e-09 36.3 0.3 1.6 1 1 0 1 1 1 1 Methyltransferase FkbM domain PrmA PF06325.13 gi|48477368|ref|YP_023074.1| - 0.0016 17.9 0.0 0.0024 17.3 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Met_10 PF02475.16 gi|48477368|ref|YP_023074.1| - 0.0069 16.2 0.2 0.0087 15.8 0.2 1.4 1 0 0 1 1 1 1 Met-10+ like-protein DUF4250 PF14056.6 gi|48477368|ref|YP_023074.1| - 0.019 14.9 0.1 0.43 10.6 0.1 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4250) Methyltransf_23 PF13489.6 gi|48477368|ref|YP_023074.1| - 0.088 12.6 0.0 0.13 12.1 0.0 1.3 1 1 0 1 1 1 0 Methyltransferase domain Polysacc_synt_C PF14667.6 gi|48477369|ref|YP_023075.1| - 7.2e-17 61.8 24.1 7.2e-17 61.8 24.1 3.8 3 1 0 3 3 3 1 Polysaccharide biosynthesis C-terminal domain Polysacc_synt PF01943.17 gi|48477369|ref|YP_023075.1| - 1.7e-12 47.3 46.1 1.7e-12 47.3 46.1 2.4 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein MatE PF01554.18 gi|48477369|ref|YP_023075.1| - 1.8e-08 34.2 20.3 1.8e-08 34.2 20.3 3.8 3 2 1 4 4 4 2 MatE MurJ PF03023.14 gi|48477369|ref|YP_023075.1| - 6.4e-08 31.6 40.5 6.4e-08 31.6 40.5 2.3 2 1 0 2 2 2 1 Lipid II flippase MurJ Polysacc_synt_3 PF13440.6 gi|48477369|ref|YP_023075.1| - 1.7e-06 27.5 26.1 1.7e-06 27.5 26.1 2.5 1 1 1 2 2 2 1 Polysaccharide biosynthesis protein Glycos_transf_1 PF00534.20 gi|48477370|ref|YP_023076.1| - 8.4e-28 97.0 0.1 1.6e-27 96.1 0.0 1.5 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|48477370|ref|YP_023076.1| - 1.5e-17 64.2 0.0 2.4e-17 63.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 gi|48477370|ref|YP_023076.1| - 0.0028 17.7 1.4 0.004 17.2 0.6 1.7 2 0 0 2 2 2 1 Glycosyl transferase 4-like GATA PF00320.27 gi|48477370|ref|YP_023076.1| - 0.1 12.2 0.2 0.24 11.0 0.2 1.7 1 0 0 1 1 1 0 GATA zinc finger Glyco_trans_1_2 PF13524.6 gi|48477370|ref|YP_023076.1| - 0.11 13.0 0.0 0.23 11.9 0.0 1.6 1 0 0 1 1 1 0 Glycosyl transferases group 1 HTH_45 PF14947.6 gi|48477371|ref|YP_023077.1| - 0.0028 17.6 1.4 0.0047 16.9 1.4 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix CtsR_C PF17727.1 gi|48477371|ref|YP_023077.1| - 0.0097 16.0 1.5 0.32 11.1 0.1 2.3 1 1 1 2 2 2 1 CtsR C-terminal dimerization domain DZR PF12773.7 gi|48477371|ref|YP_023077.1| - 0.02 14.9 1.3 0.031 14.3 1.3 1.3 1 0 0 1 1 1 0 Double zinc ribbon Vps36-NZF-N PF16988.5 gi|48477371|ref|YP_023077.1| - 0.1 12.0 3.4 0.21 11.0 3.4 1.5 1 0 0 1 1 1 0 Vacuolar protein sorting 36 NZF-N zinc-finger domain zinc_ribbon_2 PF13240.6 gi|48477371|ref|YP_023077.1| - 0.59 9.9 2.6 0.87 9.4 2.1 1.6 1 1 1 2 2 2 0 zinc-ribbon domain CD99L2 PF12301.8 gi|48477372|ref|YP_023078.1| - 0.17 12.2 0.0 0.22 11.8 0.0 1.1 1 0 0 1 1 1 0 CD99 antigen like protein 2 Glycos_transf_2 PF00535.26 gi|48477373|ref|YP_023079.1| - 7.8e-12 45.3 0.1 1.2e-11 44.7 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_4 PF13704.6 gi|48477373|ref|YP_023079.1| - 6.8e-08 32.9 0.0 1.3e-07 32.1 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|48477373|ref|YP_023079.1| - 0.013 15.4 0.0 0.016 15.1 0.0 1.1 1 0 0 1 1 1 0 Glycosyltransferase like family 2 Clathrin-link PF09268.10 gi|48477373|ref|YP_023079.1| - 0.13 11.7 0.7 0.27 10.7 0.7 1.5 1 0 0 1 1 1 0 Clathrin, heavy-chain linker Glycos_transf_2 PF00535.26 gi|48477374|ref|YP_023080.1| - 4.5e-15 55.9 3.3 7.1e-15 55.2 3.3 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|48477374|ref|YP_023080.1| - 3.9e-06 26.9 0.0 4.9e-06 26.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 GNT-I PF03071.15 gi|48477374|ref|YP_023080.1| - 0.00062 18.6 0.6 0.0014 17.5 0.1 1.8 2 0 0 2 2 2 1 GNT-I family Glyco_tranf_2_2 PF10111.9 gi|48477374|ref|YP_023080.1| - 0.0098 15.4 7.0 0.015 14.8 7.0 1.3 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glycos_transf_1 PF00534.20 gi|48477375|ref|YP_023081.1| - 2.7e-14 53.1 3.0 3.2e-14 52.8 0.3 2.1 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|48477375|ref|YP_023081.1| - 3.1e-11 43.8 0.0 5.5e-11 43.0 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 gi|48477376|ref|YP_023082.1| - 1e-18 67.5 0.3 3.2e-18 65.9 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|48477376|ref|YP_023082.1| - 2.1e-09 37.9 0.0 3e-09 37.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|48477376|ref|YP_023082.1| - 0.019 15.0 0.0 0.09 12.8 0.0 1.9 2 0 0 2 2 2 0 Glycosyltransferase Family 4 Glycos_transf_2 PF00535.26 gi|48477377|ref|YP_023083.1| - 4.5e-16 59.1 1.3 6.2e-16 58.7 1.3 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|48477377|ref|YP_023083.1| - 1.6e-07 31.5 0.0 2.1e-07 31.1 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|48477377|ref|YP_023083.1| - 0.0013 18.3 2.1 0.0019 17.7 2.1 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 GNT-I PF03071.15 gi|48477377|ref|YP_023083.1| - 0.025 13.3 0.1 0.032 13.0 0.1 1.1 1 0 0 1 1 1 0 GNT-I family TubC_N PF18563.1 gi|48477377|ref|YP_023083.1| - 0.047 13.7 0.2 15 5.7 0.0 2.5 3 0 0 3 3 3 0 TubC N-terminal docking domain DUF1116 PF06545.11 gi|48477377|ref|YP_023083.1| - 0.1 12.1 0.0 0.12 11.8 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1116) Glyco_tranf_2_4 PF13704.6 gi|48477377|ref|YP_023083.1| - 0.14 12.7 0.7 0.36 11.4 0.7 1.7 1 1 0 1 1 1 0 Glycosyl transferase family 2 LpxI_N PF17930.1 gi|48477377|ref|YP_023083.1| - 0.16 11.9 0.0 0.18 11.7 0.0 1.1 1 0 0 1 1 1 0 LpxI N-terminal domain DNA_photolyase PF00875.18 gi|48477377|ref|YP_023083.1| - 0.21 11.6 0.0 0.27 11.2 0.0 1.1 1 0 0 1 1 1 0 DNA photolyase DUF3764 PF12594.8 gi|48477378|ref|YP_023084.1| - 0.045 13.8 0.1 0.13 12.3 0.0 1.8 1 1 0 2 2 2 0 Protein of unknown function (DUF3764) NTP_transferase PF00483.23 gi|48477379|ref|YP_023085.1| - 5e-48 163.8 0.0 6.9e-48 163.4 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|48477379|ref|YP_023085.1| - 2.3e-06 28.1 0.0 3.3e-06 27.6 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.24 gi|48477379|ref|YP_023085.1| - 2.6e-05 23.8 1.1 2.6e-05 23.8 1.1 4.2 4 2 1 5 5 5 2 Bacterial transferase hexapeptide (six repeats) Fucokinase PF07959.12 gi|48477379|ref|YP_023085.1| - 3.5e-05 22.9 0.1 4.7e-05 22.5 0.1 1.2 1 0 0 1 1 1 1 L-fucokinase Hexapep_2 PF14602.6 gi|48477379|ref|YP_023085.1| - 0.00043 20.0 0.4 0.00043 20.0 0.4 4.3 4 0 0 4 4 4 2 Hexapeptide repeat of succinyl-transferase RmlD_sub_bind PF04321.17 gi|48477380|ref|YP_023086.1| - 3e-46 157.8 0.0 3.3e-46 157.7 0.0 1.0 1 0 0 1 1 1 1 RmlD substrate binding domain Epimerase PF01370.21 gi|48477380|ref|YP_023086.1| - 7.5e-15 55.0 0.0 1.1e-14 54.5 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|48477380|ref|YP_023086.1| - 1e-07 31.7 0.1 3.3e-05 23.5 0.0 2.2 1 1 1 2 2 2 2 GDP-mannose 4,6 dehydratase Polysacc_synt_2 PF02719.15 gi|48477380|ref|YP_023086.1| - 5.4e-06 25.8 0.1 0.00011 21.5 0.1 2.7 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.12 gi|48477380|ref|YP_023086.1| - 5.9e-05 22.4 0.0 0.00017 20.8 0.0 1.9 1 1 1 2 2 2 1 Male sterility protein MazE_antitoxin PF04014.18 gi|48477381|ref|YP_023087.1| - 1.8e-10 40.5 0.1 2.6e-10 40.0 0.1 1.3 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin PrlF_antitoxin PF15937.5 gi|48477381|ref|YP_023087.1| - 0.0012 19.2 0.0 0.0016 18.9 0.0 1.3 1 1 0 1 1 1 1 prlF antitoxin for toxin YhaV_toxin GDP_Man_Dehyd PF16363.5 gi|48477382|ref|YP_023088.1| - 1.9e-71 241.2 0.0 2.2e-71 241.0 0.0 1.0 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase Epimerase PF01370.21 gi|48477382|ref|YP_023088.1| - 1.3e-53 181.9 0.0 1.8e-53 181.5 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|48477382|ref|YP_023088.1| - 1.8e-13 50.2 0.2 3e-13 49.4 0.2 1.3 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 gi|48477382|ref|YP_023088.1| - 2.7e-07 30.0 0.0 3.6e-06 26.3 0.0 2.1 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.17 gi|48477382|ref|YP_023088.1| - 1.5e-06 27.5 0.0 3.8e-06 26.2 0.0 1.6 1 1 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.12 gi|48477382|ref|YP_023088.1| - 7.4e-05 22.0 0.0 0.013 14.7 0.1 2.8 2 1 0 2 2 2 1 Male sterility protein adh_short PF00106.25 gi|48477382|ref|YP_023088.1| - 0.00091 18.7 0.0 0.03 13.8 0.0 2.6 2 1 0 2 2 2 1 short chain dehydrogenase DapB_N PF01113.20 gi|48477382|ref|YP_023088.1| - 0.054 13.6 0.0 0.1 12.7 0.0 1.4 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus dTDP_sugar_isom PF00908.17 gi|48477383|ref|YP_023089.1| - 3.6e-55 186.2 0.0 4e-55 186.1 0.0 1.0 1 0 0 1 1 1 1 dTDP-4-dehydrorhamnose 3,5-epimerase Epimerase PF01370.21 gi|48477384|ref|YP_023090.1| - 2.9e-30 105.5 1.8 7.6e-22 77.9 0.1 3.0 1 1 1 2 2 2 2 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|48477384|ref|YP_023090.1| - 3.2e-23 82.7 2.8 1.5e-16 60.8 0.1 3.0 1 1 1 2 2 2 2 GDP-mannose 4,6 dehydratase Polysacc_synt_2 PF02719.15 gi|48477384|ref|YP_023090.1| - 0.00086 18.5 0.0 0.0021 17.3 0.0 1.5 1 1 1 2 2 2 1 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.17 gi|48477384|ref|YP_023090.1| - 0.0016 17.6 0.0 0.19 10.8 0.0 2.3 2 1 0 2 2 2 2 RmlD substrate binding domain 3Beta_HSD PF01073.19 gi|48477384|ref|YP_023090.1| - 0.0027 16.8 0.9 0.51 9.3 0.2 2.4 1 1 0 2 2 2 2 3-beta hydroxysteroid dehydrogenase/isomerase family Glycos_transf_1 PF00534.20 gi|48477385|ref|YP_023091.1| - 4.6e-19 68.6 0.0 6.1e-19 68.2 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|48477385|ref|YP_023091.1| - 1.2e-13 51.6 0.0 1.4e-13 51.4 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|48477385|ref|YP_023091.1| - 7.8e-08 32.6 0.0 8.9e-08 32.4 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_2 PF00535.26 gi|48477386|ref|YP_023092.1| - 5.7e-13 49.0 0.8 8.9e-13 48.4 0.8 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|48477386|ref|YP_023092.1| - 7.6e-05 22.7 0.0 9.6e-05 22.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 AICARFT_IMPCHas PF01808.18 gi|48477386|ref|YP_023092.1| - 0.016 14.7 0.0 0.024 14.1 0.0 1.2 1 0 0 1 1 1 0 AICARFT/IMPCHase bienzyme Glycos_transf_1 PF00534.20 gi|48477387|ref|YP_023093.1| - 1.4e-16 60.6 0.1 4.7e-16 58.8 0.0 1.9 2 1 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|48477387|ref|YP_023093.1| - 3.4e-14 53.2 0.0 4.7e-14 52.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.6 gi|48477387|ref|YP_023093.1| - 4.5e-13 49.8 0.0 7.7e-13 49.0 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|48477387|ref|YP_023093.1| - 1.4e-06 28.6 0.0 2.7e-06 27.7 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 DUF1824 PF08854.10 gi|48477387|ref|YP_023093.1| - 0.12 12.2 0.0 0.33 10.9 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF1824) EptA_B_N PF08019.12 gi|48477388|ref|YP_023094.1| - 0.043 13.7 0.2 0.057 13.3 0.2 1.1 1 0 0 1 1 1 0 Phosphoethanolamine transferase EptA/EptB Glyco_transf_4 PF13439.6 gi|48477389|ref|YP_023095.1| - 0.00096 19.2 0.0 0.0011 18.9 0.0 1.0 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Alpha_L_fucos PF01120.17 gi|48477389|ref|YP_023095.1| - 0.018 14.5 0.7 0.019 14.4 0.7 1.0 1 0 0 1 1 1 0 Alpha-L-fucosidase Glyco_trans_4_2 PF13477.6 gi|48477389|ref|YP_023095.1| - 0.056 13.5 0.2 0.07 13.2 0.2 1.3 1 1 0 1 1 1 0 Glycosyl transferase 4-like HTH_45 PF14947.6 gi|48477391|ref|YP_023097.1| - 5.1e-15 55.2 1.0 5.8e-15 55.0 1.0 1.0 1 0 0 1 1 1 1 Winged helix-turn-helix TrmB PF01978.19 gi|48477391|ref|YP_023097.1| - 6.8e-05 22.7 0.3 0.0001 22.1 0.3 1.4 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB FtsK_gamma PF09397.10 gi|48477391|ref|YP_023097.1| - 0.00011 21.9 0.0 0.00019 21.2 0.0 1.4 1 0 0 1 1 1 1 Ftsk gamma domain HTH_5 PF01022.20 gi|48477391|ref|YP_023097.1| - 0.001 18.9 0.0 0.0019 18.0 0.0 1.5 1 1 1 2 2 2 1 Bacterial regulatory protein, arsR family Tfb2 PF03849.14 gi|48477391|ref|YP_023097.1| - 0.0031 16.5 0.0 0.0033 16.5 0.0 1.1 1 0 0 1 1 1 1 Transcription factor Tfb2 DUF4364 PF14277.6 gi|48477391|ref|YP_023097.1| - 0.0073 16.1 0.2 0.012 15.4 0.1 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF4364) DUF2250 PF10007.9 gi|48477391|ref|YP_023097.1| - 0.014 15.5 0.7 0.018 15.2 0.7 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) DUF505 PF04458.12 gi|48477391|ref|YP_023097.1| - 0.019 13.4 0.1 0.021 13.2 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF505) HTH_12 PF08461.10 gi|48477391|ref|YP_023097.1| - 0.041 13.8 0.1 0.35 10.9 0.1 2.1 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain Ub-Mut7C PF14451.6 gi|48477391|ref|YP_023097.1| - 0.06 13.2 0.0 0.084 12.7 0.0 1.3 1 0 0 1 1 1 0 Mut7-C ubiquitin Ribosomal_S19e PF01090.19 gi|48477391|ref|YP_023097.1| - 0.06 13.0 0.0 0.065 12.9 0.0 1.3 1 0 0 1 1 1 0 Ribosomal protein S19e Mrr_N PF14338.6 gi|48477391|ref|YP_023097.1| - 0.071 13.3 0.0 0.13 12.4 0.0 1.6 1 1 1 2 2 2 0 Mrr N-terminal domain HTH_28 PF13518.6 gi|48477391|ref|YP_023097.1| - 0.16 12.2 0.0 0.32 11.2 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_IclR PF09339.10 gi|48477391|ref|YP_023097.1| - 0.17 11.7 0.0 0.25 11.1 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain Pkinase PF00069.25 gi|48477392|ref|YP_023098.1| - 1.8e-24 86.5 0.0 2.6e-24 86.0 0.0 1.2 1 0 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.17 gi|48477392|ref|YP_023098.1| - 1.8e-06 27.4 0.0 8.5e-06 25.2 0.0 2.1 1 1 0 1 1 1 1 Protein tyrosine kinase Kdo PF06293.14 gi|48477392|ref|YP_023098.1| - 0.17 11.2 0.0 0.29 10.5 0.0 1.3 1 0 0 1 1 1 0 Lipopolysaccharide kinase (Kdo/WaaP) family Glycos_transf_1 PF00534.20 gi|48477393|ref|YP_023099.1| - 3.5e-08 33.2 0.0 8.8e-08 31.9 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|48477393|ref|YP_023099.1| - 3.8e-07 30.6 0.0 8.5e-07 29.5 0.0 1.6 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|48477393|ref|YP_023099.1| - 0.00024 21.2 0.0 0.00074 19.6 0.0 1.8 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.6 gi|48477393|ref|YP_023099.1| - 0.011 16.1 0.0 0.031 14.7 0.0 1.8 2 0 0 2 2 2 0 Glycosyl transferases group 1 Ribosomal_L18 PF17135.4 gi|48477394|ref|YP_023100.1| - 8.4e-10 38.4 0.1 1.1e-09 38.0 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein 60S L18 and 50S L18e Ribosomal_L27A PF00828.19 gi|48477394|ref|YP_023100.1| - 7.2e-06 26.7 0.4 0.00019 22.1 0.4 2.2 1 1 0 1 1 1 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A Ribosomal_L13 PF00572.18 gi|48477395|ref|YP_023101.1| - 1.4e-07 31.8 0.2 1e-05 25.8 0.2 2.3 1 1 0 1 1 1 1 Ribosomal protein L13 Ribosomal_S9 PF00380.19 gi|48477396|ref|YP_023102.1| - 1.1e-31 109.9 0.2 1.2e-31 109.8 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein S9/S16 RNA_pol_N PF01194.17 gi|48477397|ref|YP_023103.1| - 1.4e-27 95.8 1.2 1.7e-27 95.5 1.2 1.1 1 0 0 1 1 1 1 RNA polymerases N / 8 kDa subunit Glycos_transf_2 PF00535.26 gi|48477399|ref|YP_023105.1| - 4.3e-14 52.7 1.0 5.3e-14 52.4 1.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|48477399|ref|YP_023105.1| - 2e-07 31.1 0.0 2.8e-07 30.7 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 GNT-I PF03071.15 gi|48477399|ref|YP_023105.1| - 0.00032 19.6 0.1 0.00036 19.4 0.1 1.1 1 0 0 1 1 1 1 GNT-I family Glyco_tranf_2_2 PF10111.9 gi|48477399|ref|YP_023105.1| - 0.026 14.0 1.1 0.037 13.5 1.1 1.2 1 0 0 1 1 1 0 Glycosyltransferase like family 2 TubC_N PF18563.1 gi|48477399|ref|YP_023105.1| - 0.037 14.0 0.2 12 5.9 0.0 2.5 3 0 0 3 3 3 0 TubC N-terminal docking domain LpxI_N PF17930.1 gi|48477399|ref|YP_023105.1| - 0.19 11.6 0.0 0.21 11.5 0.0 1.1 1 0 0 1 1 1 0 LpxI N-terminal domain PRANC PF09372.10 gi|48477399|ref|YP_023105.1| - 1.5 9.2 9.8 3.8 7.9 4.2 2.1 2 0 0 2 2 2 0 PRANC domain FKBP26_C PF18046.1 gi|48477400|ref|YP_023106.1| - 8.1e-06 25.9 1.2 2e-05 24.6 1.2 1.7 1 0 0 1 1 1 1 FKBP26_C-terminal FKBP_C PF00254.28 gi|48477400|ref|YP_023106.1| - 0.00044 20.5 4.8 0.0048 17.2 4.8 2.4 1 1 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase SpoU_methylase PF00588.19 gi|48477401|ref|YP_023107.1| - 3.5e-28 98.5 0.0 5e-28 98.1 0.0 1.2 1 0 0 1 1 1 1 SpoU rRNA Methylase family Pannexin_like PF12534.8 gi|48477402|ref|YP_023108.1| - 0.72 8.9 2.7 0.8 8.7 2.7 1.2 1 0 0 1 1 1 0 Pannexin-like TM region of LRRC8 Sugar_tr PF00083.24 gi|48477403|ref|YP_023109.1| - 3.3e-48 164.7 27.7 3.9e-48 164.4 27.7 1.0 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.16 gi|48477403|ref|YP_023109.1| - 4.4e-21 75.2 39.7 1.9e-16 60.0 28.7 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_3 PF05977.13 gi|48477403|ref|YP_023109.1| - 0.0084 14.6 0.4 0.012 14.0 0.4 1.2 1 0 0 1 1 1 1 Transmembrane secretion effector Aldedh PF00171.22 gi|48477404|ref|YP_023110.1| - 4.9e-165 549.5 0.0 5.5e-165 549.3 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.14 gi|48477404|ref|YP_023110.1| - 1.9e-06 27.2 0.0 3.5e-06 26.3 0.0 1.4 1 1 0 1 1 1 1 Acyl-CoA reductase (LuxC) Lactonase PF10282.9 gi|48477405|ref|YP_023111.1| - 6.5e-07 28.9 19.0 0.0074 15.6 3.5 5.0 4 1 0 5 5 5 3 Lactonase, 7-bladed beta-propeller Arylesterase PF01731.20 gi|48477405|ref|YP_023111.1| - 0.0056 16.8 1.0 0.0056 16.8 1.0 7.7 6 2 5 11 11 11 1 Arylesterase PQQ_3 PF13570.6 gi|48477405|ref|YP_023111.1| - 0.72 10.4 18.9 0.27 11.8 0.2 5.8 6 0 0 6 6 6 0 PQQ-like domain FGF PF00167.18 gi|48477405|ref|YP_023111.1| - 1 9.5 6.8 0.37 10.9 0.3 2.9 2 0 0 2 2 2 0 Fibroblast growth factor Acetyltransf_1 PF00583.25 gi|48477406|ref|YP_023112.1| - 2.8e-09 37.2 0.0 4.4e-09 36.6 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|48477406|ref|YP_023112.1| - 1.8e-06 27.9 0.0 2.5e-06 27.4 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|48477406|ref|YP_023112.1| - 1.8e-06 28.3 0.0 2.9e-06 27.6 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|48477406|ref|YP_023112.1| - 0.0007 19.7 0.0 0.0015 18.6 0.0 1.5 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_13 PF13880.6 gi|48477406|ref|YP_023112.1| - 0.078 13.0 0.0 0.16 12.0 0.0 1.4 1 0 0 1 1 1 0 ESCO1/2 acetyl-transferase Acetyltransf_9 PF13527.7 gi|48477406|ref|YP_023112.1| - 0.096 12.8 0.0 0.46 10.6 0.0 2.1 2 1 0 2 2 2 0 Acetyltransferase (GNAT) domain RNase_Zc3h12a PF11977.8 gi|48477407|ref|YP_023113.1| - 6.5e-22 78.0 0.7 7.3e-22 77.8 0.7 1.0 1 0 0 1 1 1 1 Zc3h12a-like Ribonuclease NYN domain DUF5615 PF18480.1 gi|48477407|ref|YP_023113.1| - 0.00029 20.5 1.0 0.00044 19.9 0.9 1.5 1 1 0 1 1 1 1 Domain of unknown function (DUF5615) PRORP PF16953.5 gi|48477407|ref|YP_023113.1| - 0.008 15.7 0.0 0.0096 15.5 0.0 1.1 1 0 0 1 1 1 1 Protein-only RNase P DUF4411 PF14367.6 gi|48477407|ref|YP_023113.1| - 0.025 14.5 0.0 0.029 14.3 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4411) PIN_9 PF18477.1 gi|48477407|ref|YP_023113.1| - 0.03 14.6 0.0 0.1 12.9 0.0 1.7 1 1 1 2 2 2 0 PIN like domain DrsE PF02635.15 gi|48477407|ref|YP_023113.1| - 0.066 13.6 0.0 0.082 13.3 0.0 1.2 1 0 0 1 1 1 0 DsrE/DsrF-like family DUF3726 PF12525.8 gi|48477407|ref|YP_023113.1| - 0.078 13.1 0.0 0.11 12.6 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3726) Peptidase_S13 PF02113.15 gi|48477407|ref|YP_023113.1| - 0.098 11.4 0.0 0.1 11.3 0.0 1.1 1 0 0 1 1 1 0 D-Ala-D-Ala carboxypeptidase 3 (S13) family PK PF00224.21 gi|48477408|ref|YP_023114.1| - 4.3e-91 305.4 4.5 6.2e-91 304.9 4.5 1.2 1 0 0 1 1 1 1 Pyruvate kinase, barrel domain PK_C PF02887.16 gi|48477408|ref|YP_023114.1| - 1.7e-14 54.0 0.0 3.2e-14 53.2 0.0 1.4 1 0 0 1 1 1 1 Pyruvate kinase, alpha/beta domain HpcH_HpaI PF03328.14 gi|48477408|ref|YP_023114.1| - 0.04 13.0 0.1 0.067 12.3 0.1 1.4 1 0 0 1 1 1 0 HpcH/HpaI aldolase/citrate lyase family NOGCT PF08155.11 gi|48477408|ref|YP_023114.1| - 0.15 12.1 3.7 0.5 10.4 3.7 1.9 1 0 0 1 1 1 0 NOGCT (NUC087) domain DUF2970 PF11174.8 gi|48477409|ref|YP_023115.1| - 4.4 7.2 7.5 12 5.9 0.2 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2970) AA_permease PF00324.21 gi|48477410|ref|YP_023116.1| - 2.8e-23 82.3 65.7 4.2e-23 81.7 65.7 1.3 1 1 0 1 1 1 1 Amino acid permease AA_permease_2 PF13520.6 gi|48477410|ref|YP_023116.1| - 3.3e-20 72.3 66.3 4.4e-20 71.9 66.3 1.1 1 0 0 1 1 1 1 Amino acid permease DUF4267 PF14087.6 gi|48477410|ref|YP_023116.1| - 5.2 7.2 7.4 0.22 11.6 0.2 2.4 3 0 0 3 3 3 0 Domain of unknown function (DUF4267) DAHP_synth_1 PF00793.20 gi|48477411|ref|YP_023117.1| - 5.7e-71 238.6 0.0 6.7e-71 238.4 0.0 1.0 1 0 0 1 1 1 1 DAHP synthetase I family NeuB PF03102.14 gi|48477411|ref|YP_023117.1| - 3.6e-09 36.4 0.1 2.7e-08 33.6 0.0 2.2 2 1 0 2 2 2 1 NeuB family IGPS PF00218.21 gi|48477412|ref|YP_023118.1| - 8.4e-40 136.5 1.1 1.1e-39 136.2 1.1 1.0 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase GATase PF00117.28 gi|48477413|ref|YP_023119.1| - 4.6e-39 134.1 0.0 5.2e-39 134.0 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|48477413|ref|YP_023119.1| - 8.1e-05 22.5 0.2 0.00051 19.9 0.2 1.9 1 1 0 1 1 1 1 Peptidase C26 PseudoU_synth_2 PF00849.22 gi|48477413|ref|YP_023119.1| - 0.034 14.2 0.0 6.4 6.8 0.0 2.2 2 0 0 2 2 2 0 RNA pseudouridylate synthase Chorismate_bind PF00425.18 gi|48477414|ref|YP_023120.1| - 8.8e-77 258.1 0.0 1.3e-76 257.5 0.0 1.2 1 0 0 1 1 1 1 chorismate binding enzyme PRAI PF00697.22 gi|48477415|ref|YP_023121.1| - 2.8e-16 59.9 0.0 8.1e-16 58.4 0.0 1.7 1 1 0 1 1 1 1 N-(5'phosphoribosyl)anthranilate (PRA) isomerase Glycos_transf_3 PF00591.21 gi|48477416|ref|YP_023122.1| - 1.6e-56 191.8 0.0 1.9e-56 191.5 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.17 gi|48477416|ref|YP_023122.1| - 2.3e-08 33.7 0.0 6.3e-08 32.3 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferase family, helical bundle domain Trp_syntA PF00290.20 gi|48477417|ref|YP_023123.1| - 3.3e-27 95.0 0.0 4.2e-27 94.6 0.0 1.1 1 0 0 1 1 1 1 Tryptophan synthase alpha chain His_biosynth PF00977.21 gi|48477417|ref|YP_023123.1| - 0.02 14.4 0.0 0.034 13.6 0.0 1.3 1 0 0 1 1 1 0 Histidine biosynthesis protein PALP PF00291.25 gi|48477418|ref|YP_023124.1| - 4.7e-36 124.7 0.0 6e-36 124.4 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme YbjQ_1 PF01906.17 gi|48477419|ref|YP_023125.1| - 1.7e-34 118.5 3.1 2e-34 118.4 3.1 1.0 1 0 0 1 1 1 1 Putative heavy-metal-binding SeleniumBinding PF11524.8 gi|48477419|ref|YP_023125.1| - 0.046 14.1 0.3 0.3 11.6 0.1 2.0 2 0 0 2 2 2 0 Selenium binding protein TIM PF00121.18 gi|48477420|ref|YP_023126.1| - 1.6e-10 40.8 0.0 1.5e-09 37.6 0.0 2.0 1 1 1 2 2 2 1 Triosephosphate isomerase His_biosynth PF00977.21 gi|48477420|ref|YP_023126.1| - 1.4e-06 27.9 0.0 2e-06 27.5 0.0 1.1 1 0 0 1 1 1 1 Histidine biosynthesis protein ThiG PF05690.14 gi|48477420|ref|YP_023126.1| - 0.0011 18.4 0.1 0.0015 17.9 0.1 1.1 1 0 0 1 1 1 1 Thiazole biosynthesis protein ThiG IGPS PF00218.21 gi|48477420|ref|YP_023126.1| - 0.01 15.0 0.0 0.013 14.7 0.0 1.1 1 0 0 1 1 1 0 Indole-3-glycerol phosphate synthase NMO PF03060.15 gi|48477420|ref|YP_023126.1| - 0.038 13.4 0.0 0.049 13.0 0.0 1.1 1 0 0 1 1 1 0 Nitronate monooxygenase DUF1275 PF06912.11 gi|48477421|ref|YP_023127.1| - 0.0092 15.9 0.0 0.029 14.3 0.0 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF1275) HTH_5 PF01022.20 gi|48477423|ref|YP_023129.1| - 0.058 13.3 0.0 0.087 12.7 0.0 1.2 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Inhibitor_I69 PF13734.6 gi|48477424|ref|YP_023130.1| - 0.00098 19.5 0.5 0.13 12.7 0.1 2.2 2 0 0 2 2 2 2 Spi protease inhibitor NADHdh_A3 PF14987.6 gi|48477424|ref|YP_023130.1| - 0.0035 17.6 0.1 0.0055 17.0 0.1 1.4 1 0 0 1 1 1 1 NADH dehydrogenase 1 alpha subcomplex subunit 3 DUF3347 PF11827.8 gi|48477425|ref|YP_023131.1| - 0.04 14.1 0.9 0.04 14.1 0.9 2.4 2 1 1 3 3 3 0 Protein of unknown function (DUF3347) HEPN_AbiU2 PF18734.1 gi|48477425|ref|YP_023131.1| - 0.28 10.7 4.0 0.35 10.4 0.2 2.2 2 0 0 2 2 2 0 AbiU2 Hfq PF17209.3 gi|48477426|ref|YP_023132.1| - 0.00045 19.8 0.2 0.00079 19.0 0.2 1.4 1 0 0 1 1 1 1 Hfq protein zinc_ribbon_2 PF13240.6 gi|48477427|ref|YP_023133.1| - 1.4e-05 24.6 4.9 1.4e-05 24.6 4.9 1.8 2 0 0 2 2 2 1 zinc-ribbon domain DZR PF12773.7 gi|48477427|ref|YP_023133.1| - 2.4e-05 24.3 2.4 2.4e-05 24.3 2.4 2.0 2 0 0 2 2 2 1 Double zinc ribbon zf-RanBP PF00641.18 gi|48477427|ref|YP_023133.1| - 0.0015 17.8 1.0 0.0015 17.8 1.0 2.1 2 0 0 2 2 2 1 Zn-finger in Ran binding protein and others zf-ribbon_3 PF13248.6 gi|48477427|ref|YP_023133.1| - 0.016 14.6 2.7 0.016 14.6 2.7 2.0 2 0 0 2 2 2 0 zinc-ribbon domain CLIP1_ZNF PF16641.5 gi|48477427|ref|YP_023133.1| - 0.02 14.8 5.5 0.089 12.7 0.9 2.5 2 0 0 2 2 2 0 CLIP1 zinc knuckle zinc_ribbon_15 PF17032.5 gi|48477427|ref|YP_023133.1| - 0.027 15.2 7.1 0.041 14.6 7.1 1.3 1 1 0 1 1 1 0 zinc-ribbon family Bromodomain PF00439.25 gi|48477427|ref|YP_023133.1| - 0.063 13.3 0.1 0.087 12.9 0.1 1.3 1 0 0 1 1 1 0 Bromodomain RecR PF02132.15 gi|48477427|ref|YP_023133.1| - 0.85 9.2 5.9 0.44 10.2 1.2 2.2 2 0 0 2 2 2 0 RecR protein TF_Zn_Ribbon PF08271.12 gi|48477427|ref|YP_023133.1| - 1.2 8.7 7.3 0.7 9.5 3.9 2.2 1 1 1 2 2 2 0 TFIIB zinc-binding Nudix_N_2 PF14803.6 gi|48477427|ref|YP_023133.1| - 1.5 8.8 8.5 3.3 7.7 0.1 3.3 3 1 0 3 3 3 0 Nudix N-terminal HypA PF01155.19 gi|48477427|ref|YP_023133.1| - 1.5 8.8 4.8 2.6 8.1 4.8 1.5 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA ADK_lid PF05191.14 gi|48477427|ref|YP_023133.1| - 6 6.9 12.6 1.9 8.6 6.2 2.4 2 1 0 2 2 2 0 Adenylate kinase, active site lid Prim-Pol PF09250.11 gi|48477428|ref|YP_023134.1| - 9.1e-27 94.4 0.0 1.6e-26 93.6 0.0 1.4 1 0 0 1 1 1 1 Bifunctional DNA primase/polymerase, N-terminal DUF1871 PF08958.10 gi|48477429|ref|YP_023135.1| - 0.11 12.9 0.2 0.47 10.8 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF1871) VAPB_antitox PF02697.14 gi|48477430|ref|YP_023136.1| - 0.052 14.3 0.6 0.052 14.3 0.6 2.3 3 0 0 3 3 3 0 Putative antitoxin DUF2368 PF10166.9 gi|48477430|ref|YP_023136.1| - 0.087 12.4 0.2 0.16 11.6 0.2 1.4 1 0 0 1 1 1 0 Uncharacterised conserved protein (DUF2368) MCM3AP_GANP PF16769.5 gi|48477430|ref|YP_023136.1| - 0.096 10.9 2.3 0.11 10.7 2.3 1.0 1 0 0 1 1 1 0 MCM3AP domain of GANP HTH_12 PF08461.10 gi|48477431|ref|YP_023137.1| - 0.0043 17.0 0.0 0.0062 16.5 0.0 1.2 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain DUF1456 PF07308.13 gi|48477431|ref|YP_023137.1| - 0.054 13.8 0.0 0.064 13.6 0.0 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF1456) FUR PF01475.19 gi|48477431|ref|YP_023137.1| - 0.083 13.0 0.2 0.092 12.9 0.2 1.1 1 0 0 1 1 1 0 Ferric uptake regulator family Amidohydro_2 PF04909.14 gi|48477431|ref|YP_023137.1| - 0.22 11.3 0.0 0.22 11.3 0.0 1.1 1 0 0 1 1 1 0 Amidohydrolase DUF3796 PF12676.7 gi|48477433|ref|YP_023139.1| - 0.054 13.9 7.6 0.072 13.5 7.6 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3796) DUF2207 PF09972.9 gi|48477433|ref|YP_023139.1| - 2.3 6.9 7.8 2.6 6.7 7.8 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) Phage_integrase PF00589.22 gi|48477434|ref|YP_023140.1| - 3.8e-26 91.9 0.2 6e-26 91.3 0.2 1.3 1 0 0 1 1 1 1 Phage integrase family DZR PF12773.7 gi|48477434|ref|YP_023140.1| - 0.00093 19.2 0.3 0.0018 18.3 0.3 1.4 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|48477434|ref|YP_023140.1| - 0.012 15.4 7.1 0.023 14.4 7.1 1.5 1 0 0 1 1 1 0 zinc-ribbon domain Phage_int_SAM_5 PF13102.6 gi|48477434|ref|YP_023140.1| - 0.057 13.8 1.6 29 5.1 0.5 3.5 2 2 0 2 2 2 0 Phage integrase SAM-like domain UPF0547 PF10571.9 gi|48477434|ref|YP_023140.1| - 0.14 12.2 3.7 0.33 11.1 3.7 1.6 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 zf-tcix PF14952.6 gi|48477434|ref|YP_023140.1| - 0.18 11.5 1.8 0.38 10.4 1.8 1.5 1 0 0 1 1 1 0 Putative treble-clef, zinc-finger, Zn-binding zf-ribbon_3 PF13248.6 gi|48477434|ref|YP_023140.1| - 0.97 8.9 6.3 2.1 7.8 6.3 1.5 1 0 0 1 1 1 0 zinc-ribbon domain TetR_N PF00440.23 gi|48477435|ref|YP_023141.1| - 2.7e-16 59.1 0.2 4.2e-16 58.5 0.2 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family LacI PF00356.21 gi|48477435|ref|YP_023141.1| - 0.18 11.6 0.1 0.5 10.2 0.1 1.8 1 0 0 1 1 1 0 Bacterial regulatory proteins, lacI family SLAC1 PF03595.17 gi|48477436|ref|YP_023142.1| - 7.6e-31 107.6 44.8 9e-31 107.3 44.8 1.0 1 0 0 1 1 1 1 Voltage-dependent anion channel Glyco_hydro_15 PF00723.21 gi|48477437|ref|YP_023143.1| - 2.6e-05 23.2 0.2 0.00065 18.6 0.1 2.3 2 0 0 2 2 2 2 Glycosyl hydrolases family 15 adh_short_C2 PF13561.6 gi|48477438|ref|YP_023144.1| - 1.2e-24 87.2 0.0 3.2e-24 85.8 0.0 1.6 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|48477438|ref|YP_023144.1| - 8.2e-23 80.9 0.1 2.8e-22 79.1 0.0 1.7 2 0 0 2 2 2 1 short chain dehydrogenase DUF4131 PF13567.6 gi|48477439|ref|YP_023145.1| - 4.4 6.9 6.5 2.2 7.9 1.0 2.7 3 0 0 3 3 3 0 Domain of unknown function (DUF4131) Pilin_N PF07790.11 gi|48477439|ref|YP_023145.1| - 7.1 7.6 11.7 2 9.4 0.1 4.0 4 0 0 4 4 4 0 Archaeal Type IV pilin, N-terminal DUF998 PF06197.13 gi|48477440|ref|YP_023146.1| - 7.6e-15 55.0 12.2 9.9e-15 54.6 12.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF998) Thioredoxin_3 PF13192.6 gi|48477441|ref|YP_023147.1| - 5.9e-28 96.7 1.2 2.4e-18 66.0 0.1 2.2 2 0 0 2 2 2 2 Thioredoxin domain Glutaredoxin PF00462.24 gi|48477441|ref|YP_023147.1| - 1.4e-12 47.6 3.4 8.3e-08 32.3 0.1 2.6 3 0 0 3 3 3 2 Glutaredoxin Thioredoxin PF00085.20 gi|48477441|ref|YP_023147.1| - 9.8e-10 38.3 1.0 5e-05 23.2 0.1 2.2 2 0 0 2 2 2 2 Thioredoxin ABC_transp_aux PF09822.9 gi|48477441|ref|YP_023147.1| - 3.4e-09 36.6 0.2 0.0007 19.1 0.0 2.1 2 0 0 2 2 2 2 ABC-type uncharacterized transport system Thioredoxin_9 PF14595.6 gi|48477441|ref|YP_023147.1| - 2.6e-05 24.0 0.1 0.016 15.0 0.1 2.2 2 0 0 2 2 2 2 Thioredoxin Thioredoxin_4 PF13462.6 gi|48477441|ref|YP_023147.1| - 4.5e-05 23.7 1.5 0.38 10.9 0.0 3.2 2 1 1 3 3 3 2 Thioredoxin Thioredoxin_2 PF13098.6 gi|48477441|ref|YP_023147.1| - 0.00059 20.3 4.7 0.69 10.4 0.4 3.6 2 2 0 2 2 2 2 Thioredoxin-like domain DSBA PF01323.20 gi|48477441|ref|YP_023147.1| - 0.004 16.9 0.1 0.015 15.1 0.0 1.9 2 0 0 2 2 2 1 DSBA-like thioredoxin domain TraF PF13728.6 gi|48477441|ref|YP_023147.1| - 0.013 15.3 0.1 0.43 10.4 0.0 2.9 2 2 0 2 2 2 0 F plasmid transfer operon protein LemA PF04011.12 gi|48477441|ref|YP_023147.1| - 0.016 15.0 0.0 0.027 14.4 0.0 1.3 1 0 0 1 1 1 0 LemA family HEPN_RES_NTD1 PF18870.1 gi|48477441|ref|YP_023147.1| - 0.046 13.9 2.0 0.33 11.1 0.9 2.3 2 1 0 2 2 2 0 HEPN/RES N-terminal domain 1 tRNA-synt_2c PF01411.19 gi|48477442|ref|YP_023148.1| - 1.2e-14 53.7 0.2 2.1e-14 52.9 0.0 1.4 2 0 0 2 2 2 1 tRNA synthetases class II (A) tRNA_SAD PF07973.14 gi|48477442|ref|YP_023148.1| - 8.6e-10 38.6 0.9 1.9e-09 37.5 0.9 1.6 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain DUF4354 PF14263.6 gi|48477442|ref|YP_023148.1| - 0.073 12.9 0.0 0.15 11.9 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4354) Aminotran_5 PF00266.19 gi|48477443|ref|YP_023149.1| - 4.5e-20 72.0 0.0 6.1e-20 71.5 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|48477443|ref|YP_023149.1| - 0.00071 18.2 0.2 0.0011 17.6 0.2 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_1_2 PF00155.21 gi|48477443|ref|YP_023149.1| - 0.0019 17.5 0.0 0.027 13.6 0.0 2.5 1 1 0 1 1 1 1 Aminotransferase class I and II Asparaginase PF00710.20 gi|48477443|ref|YP_023149.1| - 0.059 12.9 0.0 0.13 11.7 0.0 1.5 1 0 0 1 1 1 0 Asparaginase, N-terminal 2-Hacid_dh_C PF02826.19 gi|48477444|ref|YP_023150.1| - 1.4e-43 148.3 0.0 2.2e-43 147.7 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|48477444|ref|YP_023150.1| - 1.9e-34 118.2 0.1 2.4e-34 117.9 0.1 1.0 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AdoHcyase_NAD PF00670.21 gi|48477444|ref|YP_023150.1| - 3.3e-05 24.0 0.0 0.00013 22.0 0.0 1.9 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain NAD_binding_2 PF03446.15 gi|48477444|ref|YP_023150.1| - 0.11 12.6 0.0 0.37 10.9 0.0 1.9 2 1 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase Gp_dh_N PF00044.24 gi|48477444|ref|YP_023150.1| - 0.21 12.0 1.2 0.56 10.6 1.2 1.9 1 1 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|48477444|ref|YP_023150.1| - 0.29 11.7 2.3 0.69 10.5 1.0 2.5 2 1 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent Oxidored_FMN PF00724.20 gi|48477445|ref|YP_023151.1| - 8.9e-63 212.6 0.0 2.3e-62 211.2 0.0 1.6 1 1 0 1 1 1 1 NADH:flavin oxidoreductase / NADH oxidase family AlaDh_PNT_C PF01262.21 gi|48477445|ref|YP_023151.1| - 0.0081 15.5 0.0 0.016 14.6 0.0 1.4 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Dus PF01207.17 gi|48477445|ref|YP_023151.1| - 0.011 14.9 0.0 0.018 14.1 0.0 1.3 1 0 0 1 1 1 0 Dihydrouridine synthase (Dus) Pyr_redox_2 PF07992.14 gi|48477445|ref|YP_023151.1| - 0.026 13.8 0.1 0.092 12.0 0.0 1.8 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|48477445|ref|YP_023151.1| - 0.058 13.6 0.0 0.32 11.2 0.0 2.2 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.27 gi|48477445|ref|YP_023151.1| - 0.087 13.4 0.0 0.81 10.3 0.0 2.3 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|48477445|ref|YP_023151.1| - 0.19 10.7 0.0 0.32 10.0 0.0 1.3 1 0 0 1 1 1 0 Glucose inhibited division protein A Peptidase_M22 PF00814.25 gi|48477446|ref|YP_023152.1| - 1e-82 277.9 0.0 1.4e-82 277.4 0.0 1.2 1 0 0 1 1 1 1 Glycoprotease family Kdo PF06293.14 gi|48477446|ref|YP_023152.1| - 1.8e-05 24.2 0.1 3e-05 23.5 0.1 1.4 1 0 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family RIO1 PF01163.22 gi|48477446|ref|YP_023152.1| - 4.2e-05 23.2 0.1 8.4e-05 22.3 0.1 1.4 1 0 0 1 1 1 1 RIO1 family Pkinase PF00069.25 gi|48477446|ref|YP_023152.1| - 0.00074 19.0 0.3 0.0014 18.0 0.3 1.4 1 0 0 1 1 1 1 Protein kinase domain APH PF01636.23 gi|48477446|ref|YP_023152.1| - 0.035 14.0 0.0 0.13 12.2 0.0 1.6 1 1 1 2 2 2 0 Phosphotransferase enzyme family Carbam_trans_N PF02543.15 gi|48477446|ref|YP_023152.1| - 0.092 12.4 0.8 1.3 8.6 0.0 2.8 3 0 0 3 3 3 0 Carbamoyltransferase N-terminus Bac_DNA_binding PF00216.21 gi|48477447|ref|YP_023153.1| - 5.9e-21 74.5 3.1 7.4e-21 74.2 3.1 1.0 1 0 0 1 1 1 1 Bacterial DNA-binding protein HU-HIG PF18291.1 gi|48477447|ref|YP_023153.1| - 2.6e-05 24.3 0.1 3.1e-05 24.1 0.1 1.0 1 0 0 1 1 1 1 HU domain fused to wHTH, Ig, or Glycine-rich motif HU-CCDC81_bac_2 PF18175.1 gi|48477447|ref|YP_023153.1| - 0.0005 19.9 0.0 0.00089 19.1 0.0 1.3 1 0 0 1 1 1 1 CCDC81-like prokaryotic HU domain 2 DAG_kinase_N PF14513.6 gi|48477447|ref|YP_023153.1| - 0.029 14.6 0.0 0.049 13.8 0.0 1.4 1 1 0 1 1 1 0 Diacylglycerol kinase N-terminus FliG_N PF14842.6 gi|48477447|ref|YP_023153.1| - 0.1 13.2 0.1 0.14 12.7 0.1 1.2 1 0 0 1 1 1 0 FliG N-terminal domain DUF4777 PF16007.5 gi|48477447|ref|YP_023153.1| - 0.15 12.4 0.2 0.22 11.8 0.2 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4777) HTH_AsnC-type PF13404.6 gi|48477448|ref|YP_023154.1| - 5.6e-13 48.5 0.3 8.7e-13 47.9 0.3 1.3 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|48477448|ref|YP_023154.1| - 8e-13 47.7 1.4 1.6e-12 46.8 1.4 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_DeoR PF08220.12 gi|48477448|ref|YP_023154.1| - 3.1e-06 26.8 0.0 1.5e-05 24.6 0.0 2.0 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain AsnC_trans_reg PF01037.21 gi|48477448|ref|YP_023154.1| - 6.2e-05 22.9 0.0 0.00011 22.1 0.0 1.3 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_23 PF13384.6 gi|48477448|ref|YP_023154.1| - 0.00013 21.7 0.1 0.00029 20.5 0.1 1.6 2 0 0 2 2 2 1 Homeodomain-like domain MarR PF01047.22 gi|48477448|ref|YP_023154.1| - 0.00021 21.2 0.0 0.00049 20.0 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.12 gi|48477448|ref|YP_023154.1| - 0.00026 20.9 0.1 0.00054 19.9 0.1 1.6 1 0 0 1 1 1 1 HTH domain HTH_38 PF13936.6 gi|48477448|ref|YP_023154.1| - 0.00033 20.4 1.0 0.00076 19.2 1.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|48477448|ref|YP_023154.1| - 0.00076 19.3 0.0 0.0012 18.7 0.0 1.3 1 0 0 1 1 1 1 MarR family Sigma70_r4_2 PF08281.12 gi|48477448|ref|YP_023154.1| - 0.00087 18.9 0.0 0.0018 17.9 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_19 PF12844.7 gi|48477448|ref|YP_023154.1| - 0.0018 18.3 1.5 0.0032 17.4 0.8 1.8 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 gi|48477448|ref|YP_023154.1| - 0.0041 16.5 0.0 0.0064 15.9 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 HTH_28 PF13518.6 gi|48477448|ref|YP_023154.1| - 0.0047 17.0 0.1 0.0081 16.3 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain DUF2129 PF09902.9 gi|48477448|ref|YP_023154.1| - 0.017 15.2 0.1 0.27 11.3 0.1 2.2 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2129) HTH_20 PF12840.7 gi|48477448|ref|YP_023154.1| - 0.02 14.9 0.0 0.032 14.3 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_40 PF14493.6 gi|48477448|ref|YP_023154.1| - 0.024 15.1 0.1 0.039 14.4 0.1 1.5 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_Tnp_Tc3_2 PF01498.18 gi|48477448|ref|YP_023154.1| - 0.031 14.5 0.3 0.063 13.5 0.3 1.6 1 1 0 1 1 1 0 Transposase Sigma70_r4 PF04545.16 gi|48477448|ref|YP_023154.1| - 0.044 13.3 0.1 0.077 12.5 0.1 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 NapD PF03927.13 gi|48477448|ref|YP_023154.1| - 0.049 13.7 0.0 0.087 12.9 0.0 1.3 1 0 0 1 1 1 0 NapD protein TetR_N PF00440.23 gi|48477448|ref|YP_023154.1| - 0.057 13.2 0.0 0.11 12.4 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family HTH_5 PF01022.20 gi|48477448|ref|YP_023154.1| - 0.065 13.1 0.1 0.28 11.1 0.0 1.9 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family HTH_7 PF02796.15 gi|48477448|ref|YP_023154.1| - 0.068 13.3 0.2 0.28 11.3 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase GerE PF00196.19 gi|48477448|ref|YP_023154.1| - 0.068 12.7 0.6 0.32 10.6 0.0 2.1 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family FeoC PF09012.10 gi|48477448|ref|YP_023154.1| - 0.075 13.1 0.0 0.12 12.5 0.0 1.3 1 0 0 1 1 1 0 FeoC like transcriptional regulator HrcA_DNA-bdg PF03444.15 gi|48477448|ref|YP_023154.1| - 0.11 12.2 0.1 0.28 10.9 0.1 1.7 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Fe_dep_repress PF01325.19 gi|48477448|ref|YP_023154.1| - 0.12 12.6 0.0 0.38 11.0 0.0 1.9 2 0 0 2 2 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_30 PF13556.6 gi|48477448|ref|YP_023154.1| - 0.13 12.0 0.0 0.37 10.6 0.0 1.7 2 0 0 2 2 2 0 PucR C-terminal helix-turn-helix domain HTH_Tnp_1 PF01527.20 gi|48477448|ref|YP_023154.1| - 0.17 12.2 0.0 0.39 11.1 0.0 1.6 2 0 0 2 2 1 0 Transposase AhpC-TSA PF00578.21 gi|48477449|ref|YP_023155.1| - 2e-30 105.2 0.0 3.3e-30 104.6 0.0 1.3 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|48477449|ref|YP_023155.1| - 2.8e-16 59.5 0.0 3.7e-16 59.2 0.0 1.2 1 0 0 1 1 1 1 Redoxin 1-cysPrx_C PF10417.9 gi|48477449|ref|YP_023155.1| - 1e-13 50.9 0.1 2.2e-13 49.8 0.1 1.6 1 0 0 1 1 1 1 C-terminal domain of 1-Cys peroxiredoxin Rubrerythrin PF02915.17 gi|48477450|ref|YP_023156.1| - 8.8e-05 22.9 0.3 0.00011 22.6 0.3 1.1 1 0 0 1 1 1 1 Rubrerythrin COQ7 PF03232.13 gi|48477450|ref|YP_023156.1| - 0.0018 18.0 0.0 0.0022 17.8 0.0 1.1 1 0 0 1 1 1 1 Ubiquinone biosynthesis protein COQ7 DUF2383 PF09537.10 gi|48477450|ref|YP_023156.1| - 0.015 15.6 0.2 0.023 15.0 0.2 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF2383) Formyl_trans_N PF00551.19 gi|48477451|ref|YP_023157.1| - 1.1e-43 149.1 0.0 1.3e-43 148.8 0.0 1.1 1 0 0 1 1 1 1 Formyl transferase LysE PF01810.18 gi|48477452|ref|YP_023158.1| - 1.9e-13 50.4 12.4 2.8e-13 49.8 12.4 1.3 1 0 0 1 1 1 1 LysE type translocator OCD_Mu_crystall PF02423.15 gi|48477453|ref|YP_023159.1| - 4e-29 101.6 0.0 7e-29 100.8 0.0 1.3 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family Shikimate_DH PF01488.20 gi|48477453|ref|YP_023159.1| - 1.9e-05 24.7 0.0 0.00012 22.2 0.0 2.1 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase OB_aCoA_assoc PF01796.17 gi|48477454|ref|YP_023160.1| - 2.5e-17 62.6 0.0 3.6e-17 62.1 0.0 1.2 1 0 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated DUF35_N PF12172.8 gi|48477454|ref|YP_023160.1| - 1.9e-11 43.6 1.2 3e-11 43.0 1.2 1.3 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) SfsA_N PF17746.1 gi|48477454|ref|YP_023160.1| - 0.079 13.1 0.0 0.2 11.9 0.0 1.7 1 1 1 2 2 2 0 SfsA N-terminal OB domain RE_LlaJI PF09563.10 gi|48477454|ref|YP_023160.1| - 0.082 12.1 0.0 0.11 11.7 0.0 1.1 1 0 0 1 1 1 0 LlaJI restriction endonuclease Thiolase_N PF00108.23 gi|48477455|ref|YP_023161.1| - 2.6e-26 92.6 3.1 9.5e-26 90.7 3.1 1.8 1 1 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|48477455|ref|YP_023161.1| - 9.2e-09 35.0 0.1 5.3e-07 29.3 0.0 2.8 3 0 0 3 3 3 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 gi|48477455|ref|YP_023161.1| - 2.1e-07 30.8 0.8 3.1e-06 27.0 0.5 2.5 1 1 0 2 2 2 1 Beta-ketoacyl synthase, N-terminal domain ACP_syn_III PF08545.10 gi|48477455|ref|YP_023161.1| - 0.0088 15.9 0.2 6.9 6.6 0.0 2.8 2 0 0 2 2 2 2 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ACP_syn_III_C PF08541.10 gi|48477456|ref|YP_023162.1| - 5.3e-10 39.3 0.0 1.6e-09 37.8 0.0 1.8 1 0 0 1 1 1 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Thiolase_N PF00108.23 gi|48477456|ref|YP_023162.1| - 1.1e-05 24.9 0.1 1.7e-05 24.4 0.1 1.2 1 0 0 1 1 1 1 Thiolase, N-terminal domain HMG_CoA_synt_C PF08540.10 gi|48477456|ref|YP_023162.1| - 7.5e-05 22.5 0.2 0.012 15.3 0.0 2.2 1 1 1 2 2 2 2 Hydroxymethylglutaryl-coenzyme A synthase C terminal HMG_CoA_synt_N PF01154.17 gi|48477456|ref|YP_023162.1| - 0.00014 21.8 0.0 0.00024 21.0 0.0 1.4 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A synthase N terminal ACP_syn_III PF08545.10 gi|48477456|ref|YP_023162.1| - 0.00028 20.7 3.7 0.0026 17.6 1.1 2.6 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III WYL_3 PF18488.1 gi|48477456|ref|YP_023162.1| - 0.00097 19.5 0.1 0.0021 18.4 0.1 1.5 1 0 0 1 1 1 1 WYL domain Band_7 PF01145.25 gi|48477457|ref|YP_023163.1| - 1.2e-32 113.3 3.0 1.6e-32 112.9 3.0 1.1 1 0 0 1 1 1 1 SPFH domain / Band 7 family Band_7_1 PF13421.6 gi|48477457|ref|YP_023163.1| - 0.00069 19.4 0.2 0.0016 18.2 0.1 1.6 1 1 0 1 1 1 1 SPFH domain-Band 7 family Phi-29_GP16_7 PF06720.11 gi|48477457|ref|YP_023163.1| - 0.045 13.6 0.0 0.15 11.9 0.0 1.8 2 0 0 2 2 2 0 Bacteriophage phi-29 early protein GP16.7 RrnaAD PF00398.20 gi|48477458|ref|YP_023164.1| - 6.7e-41 140.1 0.2 1.1e-40 139.4 0.2 1.2 1 1 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_23 PF13489.6 gi|48477458|ref|YP_023164.1| - 6.3e-05 22.9 0.0 7.7e-05 22.6 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|48477458|ref|YP_023164.1| - 0.0018 18.1 0.0 0.003 17.4 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) CMAS PF02353.20 gi|48477458|ref|YP_023164.1| - 0.022 14.0 0.0 0.033 13.5 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase DUF655 PF04919.12 gi|48477459|ref|YP_023165.1| - 3.5e-68 229.1 1.4 3.9e-68 229.0 1.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF655) HHH_6 PF14579.6 gi|48477459|ref|YP_023165.1| - 6.1e-05 23.2 0.0 0.00014 22.0 0.0 1.7 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_3 PF12836.7 gi|48477459|ref|YP_023165.1| - 0.1 12.9 0.0 0.24 11.7 0.0 1.6 1 1 1 2 2 2 0 Helix-hairpin-helix motif RNA_pol_Rpb4 PF03874.16 gi|48477460|ref|YP_023166.1| - 1.5e-07 31.7 2.6 2.3e-07 31.2 2.6 1.3 1 1 0 1 1 1 1 RNA polymerase Rpb4 DUF3347 PF11827.8 gi|48477460|ref|YP_023166.1| - 0.054 13.7 0.2 0.064 13.4 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3347) HHH PF00633.23 gi|48477460|ref|YP_023166.1| - 0.1 12.5 0.1 0.36 10.8 0.0 2.0 2 0 0 2 2 2 0 Helix-hairpin-helix motif Ribosomal_L21e PF01157.18 gi|48477461|ref|YP_023167.1| - 1.2e-27 95.7 1.6 1.3e-27 95.5 1.6 1.0 1 0 0 1 1 1 1 Ribosomal protein L21e THUMP PF02926.17 gi|48477462|ref|YP_023168.1| - 0.00055 20.0 0.7 0.0011 19.1 0.1 1.8 2 0 0 2 2 2 1 THUMP domain DNA_RNApol_7kD PF03604.13 gi|48477463|ref|YP_023169.1| - 0.00012 21.7 2.6 0.00019 21.0 2.6 1.4 1 1 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit DUF1922 PF09082.10 gi|48477463|ref|YP_023169.1| - 0.00071 19.8 1.5 0.00071 19.8 1.5 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1922) Zn-ribbon_8 PF09723.10 gi|48477463|ref|YP_023169.1| - 0.042 14.0 1.2 0.058 13.5 1.2 1.3 1 0 0 1 1 1 0 Zinc ribbon domain Ribosomal_L37ae PF01780.19 gi|48477464|ref|YP_023170.1| - 2.4e-26 91.6 6.8 2.7e-26 91.4 6.8 1.0 1 0 0 1 1 1 1 Ribosomal L37ae protein family Zn_Tnp_IS1595 PF12760.7 gi|48477464|ref|YP_023170.1| - 1.2e-05 25.1 5.6 1.8e-05 24.6 5.6 1.2 1 0 0 1 1 1 1 Transposase zinc-ribbon domain Rep_fac-A_C PF08646.10 gi|48477464|ref|YP_023170.1| - 0.0024 17.6 3.5 0.0026 17.5 3.5 1.1 1 0 0 1 1 1 1 Replication factor-A C terminal domain DUF1131 PF06572.12 gi|48477464|ref|YP_023170.1| - 0.024 14.4 0.6 0.027 14.2 0.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1131) PhnA_Zn_Ribbon PF08274.12 gi|48477464|ref|YP_023170.1| - 0.047 13.6 0.5 0.74 9.8 0.0 2.1 2 0 0 2 2 2 0 PhnA Zinc-Ribbon Terminase_GpA PF05876.12 gi|48477464|ref|YP_023170.1| - 0.061 11.9 0.6 0.067 11.7 0.6 1.0 1 0 0 1 1 1 0 Phage terminase large subunit (GpA) OrfB_Zn_ribbon PF07282.11 gi|48477464|ref|YP_023170.1| - 0.11 12.5 3.3 0.16 11.9 3.3 1.4 1 1 0 1 1 1 0 Putative transposase DNA-binding domain A2L_zn_ribbon PF08792.10 gi|48477464|ref|YP_023170.1| - 0.15 11.8 0.3 0.15 11.8 0.3 2.0 2 0 0 2 2 2 0 A2L zinc ribbon domain RNA_POL_M_15KD PF02150.16 gi|48477464|ref|YP_023170.1| - 0.5 10.3 5.6 6.5 6.7 5.5 2.2 1 1 0 1 1 1 0 RNA polymerases M/15 Kd subunit zf-H2C2_2 PF13465.6 gi|48477464|ref|YP_023170.1| - 3.9 8.1 12.5 3.8 8.1 1.0 2.9 2 1 1 3 3 3 0 Zinc-finger double domain RNase_PH PF01138.21 gi|48477465|ref|YP_023171.1| - 3.4e-26 92.3 0.0 5.5e-26 91.6 0.0 1.3 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.15 gi|48477465|ref|YP_023171.1| - 1.1e-13 51.0 0.1 1.8e-13 50.3 0.1 1.4 1 0 0 1 1 1 1 3' exoribonuclease family, domain 2 RNase_PH PF01138.21 gi|48477466|ref|YP_023172.1| - 9.1e-30 103.9 0.1 1.3e-29 103.4 0.1 1.2 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.15 gi|48477466|ref|YP_023172.1| - 1.5e-15 57.0 0.3 3.3e-15 55.9 0.3 1.6 1 0 0 1 1 1 1 3' exoribonuclease family, domain 2 KH_1 PF00013.29 gi|48477467|ref|YP_023173.1| - 5.7e-09 35.7 1.2 1.4e-08 34.4 1.2 1.6 1 0 0 1 1 1 1 KH domain KH_2 PF07650.17 gi|48477467|ref|YP_023173.1| - 8.7e-07 28.7 2.0 1.6e-06 27.9 1.5 1.7 1 1 0 1 1 1 1 KH domain KH_6 PF15985.5 gi|48477467|ref|YP_023173.1| - 1.7e-05 25.0 0.1 4.3e-05 23.8 0.1 1.7 1 0 0 1 1 1 1 KH domain Vps16_N PF04841.13 gi|48477467|ref|YP_023173.1| - 0.11 11.2 0.0 0.14 10.9 0.0 1.1 1 0 0 1 1 1 0 Vps16, N-terminal region FERM_F2 PF18377.1 gi|48477468|ref|YP_023174.1| - 0.0021 18.0 0.0 0.0071 16.3 0.0 1.9 2 0 0 2 2 2 1 FERM F2 acyl-CoA binding protein-like domain Fer4_7 PF12838.7 gi|48477469|ref|YP_023175.1| - 1.8e-08 34.8 2.7 0.00058 20.4 0.5 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|48477469|ref|YP_023175.1| - 2.3e-06 27.7 7.0 2.9e-06 27.3 7.0 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|48477469|ref|YP_023175.1| - 2.1e-05 24.5 8.8 3e-05 24.0 8.8 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_11 PF13247.6 gi|48477469|ref|YP_023175.1| - 4.2e-05 23.6 4.0 4.9e-05 23.4 4.0 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain ETF_QO PF05187.13 gi|48477469|ref|YP_023175.1| - 4.4e-05 23.6 3.6 6.8e-05 23.0 3.6 1.3 1 1 0 1 1 1 1 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_6 PF12837.7 gi|48477469|ref|YP_023175.1| - 0.00011 22.2 11.4 0.00032 20.6 2.8 2.7 2 1 0 2 2 2 1 4Fe-4S binding domain Fer4_2 PF12797.7 gi|48477469|ref|YP_023175.1| - 0.00035 20.5 14.0 0.00076 19.4 4.0 2.6 2 1 0 2 2 2 1 4Fe-4S binding domain Fer4_8 PF13183.6 gi|48477469|ref|YP_023175.1| - 0.00092 19.6 2.9 0.77 10.3 0.4 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|48477469|ref|YP_023175.1| - 0.0023 18.8 7.0 0.79 10.7 0.1 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|48477469|ref|YP_023175.1| - 0.0054 16.8 9.5 0.36 11.0 0.4 2.1 1 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|48477469|ref|YP_023175.1| - 0.0056 16.4 11.4 2 8.4 0.6 4.0 4 0 0 4 4 4 2 4Fe-4S binding domain Churchill PF06573.11 gi|48477469|ref|YP_023175.1| - 0.012 16.0 0.6 0.013 15.8 0.6 1.1 1 0 0 1 1 1 0 Churchill protein Fer4_3 PF12798.7 gi|48477469|ref|YP_023175.1| - 0.077 14.0 13.9 0.46 11.5 1.5 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_20 PF14691.6 gi|48477469|ref|YP_023175.1| - 0.19 11.5 10.4 0.12 12.2 2.7 2.1 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_13 PF13370.6 gi|48477469|ref|YP_023175.1| - 0.24 12.0 7.3 0.55 10.8 7.3 1.6 1 1 0 1 1 1 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_17 PF13534.6 gi|48477469|ref|YP_023175.1| - 0.28 11.8 8.1 4.8 7.8 2.2 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|48477469|ref|YP_023175.1| - 1.2 9.8 13.1 0.93 10.2 2.9 2.7 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|48477469|ref|YP_023175.1| - 1.2 9.3 7.0 4.1 7.6 7.0 1.8 1 1 0 1 1 1 0 4Fe-4S dicluster domain DAO PF01266.24 gi|48477470|ref|YP_023176.1| - 8.3e-12 45.3 0.0 4e-05 23.4 0.1 2.1 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_oxidored PF12831.7 gi|48477470|ref|YP_023176.1| - 1.6e-09 37.6 0.0 2.7e-09 36.9 0.0 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|48477470|ref|YP_023176.1| - 2.4e-09 36.8 0.7 6.4e-09 35.4 0.7 1.6 2 1 0 2 2 2 1 FAD binding domain FAD_binding_3 PF01494.19 gi|48477470|ref|YP_023176.1| - 2.7e-07 30.2 0.0 7.3e-07 28.8 0.0 1.8 1 1 0 1 1 1 1 FAD binding domain Pyr_redox_3 PF13738.6 gi|48477470|ref|YP_023176.1| - 3.2e-07 29.9 0.6 0.0006 19.2 0.8 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.14 gi|48477470|ref|YP_023176.1| - 8.6e-07 28.5 0.4 0.0015 17.8 0.6 2.2 1 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|48477470|ref|YP_023176.1| - 5.7e-06 26.5 1.0 3.7e-05 23.9 0.7 2.5 3 0 0 3 3 3 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.14 gi|48477470|ref|YP_023176.1| - 6.3e-05 21.9 0.7 0.00034 19.5 0.6 1.9 2 0 0 2 2 2 1 HI0933-like protein Lycopene_cycl PF05834.12 gi|48477470|ref|YP_023176.1| - 9.8e-05 21.6 0.2 0.026 13.6 0.1 2.4 3 0 0 3 3 3 2 Lycopene cyclase protein GIDA PF01134.22 gi|48477470|ref|YP_023176.1| - 0.0006 19.0 0.4 0.0011 18.1 0.4 1.4 1 0 0 1 1 1 1 Glucose inhibited division protein A Thi4 PF01946.17 gi|48477470|ref|YP_023176.1| - 0.0012 18.2 0.2 0.0039 16.4 0.2 2.0 1 1 0 1 1 1 1 Thi4 family AlaDh_PNT_C PF01262.21 gi|48477470|ref|YP_023176.1| - 0.004 16.5 0.1 0.0088 15.4 0.1 1.5 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox PF00070.27 gi|48477470|ref|YP_023176.1| - 0.0063 17.1 0.3 0.05 14.2 0.3 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.14 gi|48477470|ref|YP_023176.1| - 0.01 14.7 1.5 0.23 10.3 0.0 2.2 1 1 1 2 2 2 0 Tryptophan halogenase Peptidase_S9 PF00326.21 gi|48477472|ref|YP_023178.1| - 1.4e-40 139.1 0.0 1.9e-40 138.7 0.0 1.2 1 0 0 1 1 1 1 Prolyl oligopeptidase family Abhydrolase_1 PF00561.20 gi|48477472|ref|YP_023178.1| - 7.8e-06 25.7 2.0 0.00024 20.9 1.3 2.3 1 1 1 2 2 2 1 alpha/beta hydrolase fold DLH PF01738.18 gi|48477472|ref|YP_023178.1| - 0.0013 18.3 0.0 0.0039 16.8 0.0 1.8 1 1 0 1 1 1 1 Dienelactone hydrolase family CCG PF02754.16 gi|48477473|ref|YP_023179.1| - 2.6e-07 30.8 0.0 8e-06 26.0 0.0 2.3 2 0 0 2 2 2 2 Cysteine-rich domain LUD_dom PF02589.15 gi|48477474|ref|YP_023180.1| - 5.8e-48 163.1 0.1 1e-47 162.3 0.1 1.4 1 1 0 1 1 1 1 LUD domain Fer4_8 PF13183.6 gi|48477474|ref|YP_023180.1| - 5.3e-10 39.6 1.3 9.6e-10 38.8 1.3 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|48477474|ref|YP_023180.1| - 2.2e-08 34.5 2.7 5e-08 33.4 2.7 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|48477474|ref|YP_023180.1| - 3.8e-07 30.1 6.1 4.8e-05 23.4 6.9 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|48477474|ref|YP_023180.1| - 6.4e-07 29.9 2.4 1.1e-06 29.1 2.4 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|48477474|ref|YP_023180.1| - 5.7e-05 23.0 5.8 0.0027 17.7 1.2 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|48477474|ref|YP_023180.1| - 0.00011 22.2 2.4 0.00036 20.6 2.4 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|48477474|ref|YP_023180.1| - 0.00089 19.2 6.1 0.0016 18.4 1.2 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_20 PF14691.6 gi|48477474|ref|YP_023180.1| - 0.0012 18.6 4.1 0.021 14.6 0.1 2.9 3 0 0 3 3 3 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4 PF00037.27 gi|48477474|ref|YP_023180.1| - 0.0017 18.1 7.8 0.0064 16.3 1.5 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_16 PF13484.6 gi|48477474|ref|YP_023180.1| - 0.0034 18.3 5.3 0.029 15.3 5.4 2.4 1 1 0 1 1 1 1 4Fe-4S double cluster binding domain Fer4_18 PF13746.6 gi|48477474|ref|YP_023180.1| - 0.012 15.7 1.2 0.64 10.2 0.1 2.3 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|48477474|ref|YP_023180.1| - 0.024 15.1 6.6 0.069 13.7 0.9 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_21 PF14697.6 gi|48477474|ref|YP_023180.1| - 0.062 13.4 7.4 1.6 9.0 7.4 2.4 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|48477474|ref|YP_023180.1| - 0.12 13.3 4.6 1.4 9.8 0.6 2.4 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|48477474|ref|YP_023180.1| - 4.2 8.5 10.0 13 7.0 2.4 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain AhpC-TSA PF00578.21 gi|48477475|ref|YP_023181.1| - 1.5e-35 121.8 0.0 1.8e-35 121.6 0.0 1.0 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|48477475|ref|YP_023181.1| - 7.4e-22 77.6 0.0 8.7e-22 77.4 0.0 1.0 1 0 0 1 1 1 1 Redoxin AhpC-TSA_2 PF13911.6 gi|48477475|ref|YP_023181.1| - 0.0088 16.2 0.0 0.011 15.8 0.0 1.3 1 0 0 1 1 1 1 AhpC/TSA antioxidant enzyme PAC2 PF09754.9 gi|48477476|ref|YP_023182.1| - 1.1e-45 156.3 0.0 1.3e-45 156.1 0.0 1.0 1 0 0 1 1 1 1 PAC2 family Nop10p PF04135.12 gi|298205343|ref|YP_003717795.1| - 1.7e-19 69.6 3.0 2e-19 69.4 3.0 1.2 1 0 0 1 1 1 1 Nucleolar RNA-binding protein, Nop10p family RecR PF02132.15 gi|298205343|ref|YP_003717795.1| - 0.00063 19.3 1.6 0.00082 18.9 1.6 1.2 1 0 0 1 1 1 1 RecR protein NOB1_Zn_bind PF08772.11 gi|298205343|ref|YP_003717795.1| - 0.0076 16.4 0.7 0.0094 16.1 0.7 1.2 1 0 0 1 1 1 1 Nin one binding (NOB1) Zn-ribbon like PolC_DP2 PF03833.13 gi|298205343|ref|YP_003717795.1| - 0.027 12.4 0.5 0.022 12.7 0.5 1.0 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 zf-NADH-PPase PF09297.11 gi|298205343|ref|YP_003717795.1| - 0.038 13.6 3.6 1.9 8.2 0.1 2.3 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zf-TFIIB PF13453.6 gi|298205343|ref|YP_003717795.1| - 5.4 6.4 7.8 30 4.0 0.8 2.2 1 1 2 3 3 3 0 Transcription factor zinc-finger EIF_2_alpha PF07541.12 gi|48477477|ref|YP_023183.1| - 3.9e-21 75.3 0.3 4.8e-19 68.6 0.0 2.4 2 0 0 2 2 2 1 Eukaryotic translation initiation factor 2 alpha subunit S1 PF00575.23 gi|48477477|ref|YP_023183.1| - 1.8e-10 41.0 3.2 5.7e-10 39.4 0.7 2.3 2 0 0 2 2 2 1 S1 RNA binding domain HNOB PF07700.15 gi|48477477|ref|YP_023183.1| - 0.00012 22.1 0.0 0.00025 21.0 0.0 1.6 1 0 0 1 1 1 1 Haem-NO-binding Disaggr_assoc PF08480.10 gi|48477477|ref|YP_023183.1| - 0.014 15.3 1.3 0.021 14.7 1.3 1.3 1 0 0 1 1 1 0 Disaggregatase related LZ3wCH PF18517.1 gi|48477477|ref|YP_023183.1| - 0.019 15.1 2.3 0.11 12.7 0.6 2.6 2 0 0 2 2 2 0 Leucine zipper with capping helix domain BAF250_C PF12031.8 gi|48477477|ref|YP_023183.1| - 0.1 11.9 0.1 0.24 10.7 0.1 1.7 1 1 0 1 1 1 0 SWI/SNF-like complex subunit BAF250/Osa Ribosomal_S27e PF01667.17 gi|48477478|ref|YP_023184.1| - 3.2e-16 58.8 0.8 4.3e-16 58.4 0.8 1.2 1 0 0 1 1 1 1 Ribosomal protein S27 Zn-ribbon_8 PF09723.10 gi|48477478|ref|YP_023184.1| - 0.00068 19.7 0.5 0.0011 19.0 0.5 1.2 1 0 0 1 1 1 1 Zinc ribbon domain zf-ribbon_3 PF13248.6 gi|48477478|ref|YP_023184.1| - 0.0076 15.6 2.9 1.1 8.8 0.2 2.2 2 0 0 2 2 2 2 zinc-ribbon domain HypA PF01155.19 gi|48477478|ref|YP_023184.1| - 0.011 15.8 0.2 0.013 15.5 0.2 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA TF_Zn_Ribbon PF08271.12 gi|48477478|ref|YP_023184.1| - 0.017 14.6 1.3 0.029 13.9 1.3 1.4 1 1 0 1 1 1 0 TFIIB zinc-binding zf-BED PF02892.15 gi|48477478|ref|YP_023184.1| - 0.021 14.8 1.7 0.73 9.9 0.0 2.2 2 0 0 2 2 2 0 BED zinc finger Zn_Tnp_IS1595 PF12760.7 gi|48477478|ref|YP_023184.1| - 0.039 13.9 0.5 0.049 13.6 0.5 1.2 1 0 0 1 1 1 0 Transposase zinc-ribbon domain Zn_Tnp_IS91 PF14319.6 gi|48477478|ref|YP_023184.1| - 0.042 13.9 0.6 0.046 13.8 0.6 1.1 1 0 0 1 1 1 0 Transposase zinc-binding domain zinc_ribbon_4 PF13717.6 gi|48477478|ref|YP_023184.1| - 0.042 13.8 2.2 0.36 10.8 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain ZZ PF00569.17 gi|48477478|ref|YP_023184.1| - 0.069 13.0 3.8 0.35 10.7 0.3 2.1 1 1 1 2 2 2 0 Zinc finger, ZZ type zinc_ribbon_6 PF14599.6 gi|48477478|ref|YP_023184.1| - 0.074 13.1 2.7 0.15 12.1 2.8 1.5 1 1 0 1 1 1 0 Zinc-ribbon Rubredoxin_2 PF18073.1 gi|48477478|ref|YP_023184.1| - 0.14 11.9 1.5 3 7.7 0.2 2.1 2 0 0 2 2 2 0 Rubredoxin metal binding domain zf-CCHC PF00098.23 gi|48477478|ref|YP_023184.1| - 0.37 11.0 5.8 1.6 9.0 1.4 2.4 2 0 0 2 2 2 0 Zinc knuckle Sgf11 PF08209.11 gi|48477478|ref|YP_023184.1| - 0.37 10.4 3.5 5 6.8 0.2 2.2 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) TFIIS_C PF01096.18 gi|48477478|ref|YP_023184.1| - 0.41 10.5 2.8 1 9.3 0.2 2.1 1 1 1 2 2 2 0 Transcription factor S-II (TFIIS) zinc_ribbon_13 PF09855.9 gi|48477478|ref|YP_023184.1| - 0.44 10.7 4.2 0.56 10.4 1.4 2.1 1 1 2 3 3 3 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) zinc_ribbon_2 PF13240.6 gi|48477478|ref|YP_023184.1| - 0.49 10.2 4.5 3 7.7 1.7 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Desulfoferrod_N PF06397.12 gi|48477478|ref|YP_023184.1| - 0.63 9.7 6.4 3.9 7.2 0.1 2.7 2 1 0 2 2 2 0 Desulfoferrodoxin, N-terminal domain DNA_RNApol_7kD PF03604.13 gi|48477478|ref|YP_023184.1| - 1.8 8.3 6.4 1.7 8.4 1.3 2.2 1 1 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit Ribosomal_L44 PF00935.19 gi|48477479|ref|YP_023185.1| - 3.1e-29 101.3 4.4 3.8e-29 101.0 4.4 1.1 1 0 0 1 1 1 1 Ribosomal protein L44 Ribosomal_L33 PF00471.20 gi|48477479|ref|YP_023185.1| - 0.00018 21.9 3.7 0.0082 16.6 0.9 2.5 2 0 0 2 2 2 2 Ribosomal protein L33 zf-U1 PF06220.12 gi|48477479|ref|YP_023185.1| - 0.00085 19.0 1.2 0.00093 18.9 0.2 1.6 2 0 0 2 2 2 1 U1 zinc finger zf-Di19 PF05605.12 gi|48477479|ref|YP_023185.1| - 0.039 14.2 1.2 0.35 11.2 0.1 2.1 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding zf-LITAF-like PF10601.9 gi|48477479|ref|YP_023185.1| - 0.071 13.4 1.3 0.47 10.8 0.2 2.0 2 0 0 2 2 2 0 LITAF-like zinc ribbon domain zf-ribbon_3 PF13248.6 gi|48477479|ref|YP_023185.1| - 0.15 11.5 1.4 0.34 10.4 0.1 2.0 2 0 0 2 2 2 0 zinc-ribbon domain tRNA_bind PF01588.20 gi|48477481|ref|YP_023187.1| - 1.5e-10 41.1 0.0 1.6e-10 40.9 0.0 1.0 1 0 0 1 1 1 1 Putative tRNA binding domain EamA PF00892.20 gi|48477482|ref|YP_023188.1| - 2.5e-26 92.5 51.6 1.2e-16 61.1 23.4 2.0 2 0 0 2 2 2 2 EamA-like transporter family tRNA-synt_1 PF00133.22 gi|48477483|ref|YP_023189.1| - 9.9e-168 559.1 0.2 1.4e-167 558.6 0.2 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|48477483|ref|YP_023189.1| - 2.8e-35 121.5 0.8 9.7e-35 119.8 0.8 2.0 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 gi|48477483|ref|YP_023189.1| - 1.8e-17 63.2 5.7 1.2e-07 30.8 0.2 4.3 3 2 0 4 4 4 3 tRNA synthetases class I (M) zinc_ribbon_2 PF13240.6 gi|48477483|ref|YP_023189.1| - 0.00013 21.5 2.4 1.2 9.0 0.0 3.5 3 0 0 3 3 3 1 zinc-ribbon domain tRNA-synt_1e PF01406.19 gi|48477483|ref|YP_023189.1| - 0.00029 20.3 0.0 0.0014 18.0 0.0 2.0 2 0 0 2 2 2 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.18 gi|48477483|ref|YP_023189.1| - 0.00062 18.8 0.4 0.0054 15.7 0.0 2.7 3 0 0 3 3 3 1 tRNA synthetases class I (K) DZR PF12773.7 gi|48477483|ref|YP_023189.1| - 0.0019 18.2 0.1 13 5.9 0.0 3.2 3 0 0 3 3 3 0 Double zinc ribbon tRNA-synt_1_2 PF13603.6 gi|48477483|ref|YP_023189.1| - 0.0033 17.0 0.0 0.0071 15.9 0.0 1.5 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 Mu-like_Com PF10122.9 gi|48477483|ref|YP_023189.1| - 0.0069 15.8 0.8 4.8 6.7 0.0 3.2 3 0 0 3 3 3 1 Mu-like prophage protein Com Prok-RING_1 PF14446.6 gi|48477483|ref|YP_023189.1| - 0.011 15.6 2.6 0.14 12.1 0.2 2.6 3 0 0 3 3 2 0 Prokaryotic RING finger family 1 zf-ACC PF17848.1 gi|48477483|ref|YP_023189.1| - 0.013 15.6 0.9 2.8 8.1 0.1 2.9 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain DNA_ligase_ZBD PF03119.16 gi|48477483|ref|YP_023189.1| - 0.013 15.5 0.7 0.91 9.6 0.0 2.7 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zf-TFIIB PF13453.6 gi|48477483|ref|YP_023189.1| - 0.016 14.6 0.2 3.2 7.2 0.0 2.7 2 0 0 2 2 2 0 Transcription factor zinc-finger zf-ribbon_3 PF13248.6 gi|48477483|ref|YP_023189.1| - 0.1 12.1 5.7 7.9 6.0 0.2 3.3 3 0 0 3 3 3 0 zinc-ribbon domain Pox_F11 PF04943.12 gi|48477483|ref|YP_023189.1| - 0.12 11.4 1.6 0.24 10.4 1.6 1.4 1 0 0 1 1 1 0 Poxvirus F11 protein Zn-ribbon_8 PF09723.10 gi|48477483|ref|YP_023189.1| - 0.26 11.4 2.7 3.7 7.8 0.1 2.7 3 0 0 3 3 2 0 Zinc ribbon domain zf_UBZ PF18439.1 gi|48477483|ref|YP_023189.1| - 0.27 10.9 3.3 4.8 6.9 0.0 3.1 3 0 0 3 3 3 0 Ubiquitin-Binding Zinc Finger PhnA_Zn_Ribbon PF08274.12 gi|48477483|ref|YP_023189.1| - 0.55 10.2 1.6 1.1 9.3 0.1 2.1 2 0 0 2 2 2 0 PhnA Zinc-Ribbon zf-NADH-PPase PF09297.11 gi|48477483|ref|YP_023189.1| - 0.56 9.9 7.3 6.8 6.4 0.2 3.3 3 0 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain Zn_ribbon_recom PF13408.6 gi|48477483|ref|YP_023189.1| - 0.59 10.7 3.6 7 7.2 0.0 3.5 4 0 0 4 4 3 0 Recombinase zinc beta ribbon domain YhfH PF14149.6 gi|48477483|ref|YP_023189.1| - 0.6 10.1 1.8 7.7 6.6 0.4 2.6 2 0 0 2 2 2 0 YhfH-like protein zf-C4_Topoisom PF01396.19 gi|48477483|ref|YP_023189.1| - 0.67 9.8 5.2 1.1 9.1 0.3 3.0 3 0 0 3 3 3 0 Topoisomerase DNA binding C4 zinc finger Nudix_N_2 PF14803.6 gi|48477483|ref|YP_023189.1| - 1.5 8.8 6.5 14 5.7 0.2 3.3 3 0 0 3 3 3 0 Nudix N-terminal TF_Zn_Ribbon PF08271.12 gi|48477483|ref|YP_023189.1| - 2 8.0 4.3 4.6 6.8 0.1 3.0 3 0 0 3 3 3 0 TFIIB zinc-binding UPF0020 PF01170.18 gi|48477484|ref|YP_023190.1| - 1.5e-24 86.8 0.0 1.1e-23 84.0 0.0 2.0 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 N6_N4_Mtase PF01555.18 gi|48477484|ref|YP_023190.1| - 2.1e-07 30.9 0.1 7e-07 29.2 0.0 1.9 2 1 0 2 2 2 1 DNA methylase Methyltransf_15 PF09445.10 gi|48477484|ref|YP_023190.1| - 6.1e-06 25.9 0.1 1.1e-05 25.1 0.1 1.4 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase N6_Mtase PF02384.16 gi|48477484|ref|YP_023190.1| - 0.0013 18.1 1.9 0.0017 17.7 0.1 2.1 2 1 0 2 2 2 1 N-6 DNA Methylase Methyltransf_31 PF13847.6 gi|48477484|ref|YP_023190.1| - 0.0018 18.0 0.0 0.003 17.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|48477484|ref|YP_023190.1| - 0.0027 18.4 0.0 0.0088 16.7 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain AviRa PF11599.8 gi|48477484|ref|YP_023190.1| - 0.0058 16.1 0.0 0.25 10.8 0.0 2.2 1 1 1 2 2 2 1 RRNA methyltransferase AviRa MethyltransfD12 PF02086.15 gi|48477484|ref|YP_023190.1| - 0.024 14.3 4.7 0.043 13.5 1.0 2.8 2 1 0 2 2 2 0 D12 class N6 adenine-specific DNA methyltransferase Cons_hypoth95 PF03602.15 gi|48477484|ref|YP_023190.1| - 0.024 14.3 0.2 0.4 10.3 0.0 2.6 2 1 1 3 3 3 0 Conserved hypothetical protein 95 MTS PF05175.14 gi|48477484|ref|YP_023190.1| - 0.076 12.6 0.0 0.13 11.8 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase small domain RNA_pol_L_2 PF13656.6 gi|48477485|ref|YP_023191.1| - 6e-13 48.4 0.1 7.4e-13 48.1 0.1 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain LigB PF02900.18 gi|48477486|ref|YP_023192.1| - 3.6e-08 32.8 0.0 4.5e-08 32.5 0.0 1.1 1 0 0 1 1 1 1 Catalytic LigB subunit of aromatic ring-opening dioxygenase GTP_EFTU PF00009.27 gi|48477487|ref|YP_023193.1| - 1.7e-55 187.6 0.0 2.4e-55 187.1 0.0 1.1 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.17 gi|48477487|ref|YP_023193.1| - 3.7e-35 120.6 0.4 9.4e-35 119.3 0.1 1.9 3 0 0 3 3 2 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.25 gi|48477487|ref|YP_023193.1| - 1.7e-17 63.5 3.4 2.2e-16 60.0 0.4 2.8 3 0 0 3 3 3 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|48477487|ref|YP_023193.1| - 5.4e-08 32.9 0.0 1.1e-06 28.6 0.0 2.3 1 1 0 1 1 1 1 50S ribosome-binding GTPase Roc PF08477.13 gi|48477487|ref|YP_023193.1| - 0.0012 19.1 0.3 0.27 11.4 0.0 2.3 1 1 1 2 2 2 1 Ras of Complex, Roc, domain of DAPkinase Ras PF00071.22 gi|48477487|ref|YP_023193.1| - 0.0016 18.1 0.6 0.033 13.8 0.1 2.2 1 1 1 2 2 2 1 Ras family PduV-EutP PF10662.9 gi|48477487|ref|YP_023193.1| - 0.0026 17.5 0.2 0.19 11.5 0.0 3.0 4 0 0 4 4 4 1 Ethanolamine utilisation - propanediol utilisation GTP_EFTU_D4 PF14578.6 gi|48477487|ref|YP_023193.1| - 0.0028 17.5 1.0 0.0066 16.3 1.0 1.6 1 0 0 1 1 1 1 Elongation factor Tu domain 4 Septin PF00735.18 gi|48477487|ref|YP_023193.1| - 0.0096 15.2 0.0 0.02 14.2 0.0 1.5 1 1 0 1 1 1 1 Septin Gtr1_RagA PF04670.12 gi|48477487|ref|YP_023193.1| - 0.011 15.1 0.0 0.052 12.9 0.0 1.9 1 1 0 1 1 1 0 Gtr1/RagA G protein conserved region Dynamin_N PF00350.23 gi|48477487|ref|YP_023193.1| - 0.016 15.3 0.0 4.8 7.2 0.0 2.3 1 1 1 2 2 2 0 Dynamin family Arf PF00025.21 gi|48477487|ref|YP_023193.1| - 0.03 13.8 0.0 3.2 7.2 0.0 2.8 2 1 0 2 2 2 0 ADP-ribosylation factor family SRPRB PF09439.10 gi|48477487|ref|YP_023193.1| - 0.055 12.9 0.0 1.4 8.3 0.0 2.2 1 1 0 1 1 1 0 Signal recognition particle receptor beta subunit FeoB_N PF02421.18 gi|48477487|ref|YP_023193.1| - 0.096 12.2 0.1 0.99 8.9 0.0 2.5 2 1 0 2 2 2 0 Ferrous iron transport protein B Ribosomal_S10 PF00338.22 gi|48477488|ref|YP_023194.1| - 5.3e-28 97.1 0.0 5.9e-28 97.0 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e PriA_C PF18074.1 gi|48477488|ref|YP_023194.1| - 0.035 14.9 0.0 0.083 13.7 0.0 1.6 2 0 0 2 2 2 0 Primosomal protein N C-terminal domain GTP_EFTU PF00009.27 gi|48477489|ref|YP_023195.1| - 9.8e-62 208.0 0.4 1.8e-61 207.1 0.4 1.4 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_C PF00679.24 gi|48477489|ref|YP_023195.1| - 1.7e-25 88.9 0.1 4.4e-25 87.5 0.1 1.8 1 0 0 1 1 1 1 Elongation factor G C-terminus EFG_IV PF03764.18 gi|48477489|ref|YP_023195.1| - 2.5e-25 88.6 0.0 1e-24 86.6 0.0 2.2 1 0 0 1 1 1 1 Elongation factor G, domain IV EFG_II PF14492.6 gi|48477489|ref|YP_023195.1| - 6.2e-24 83.9 0.2 1.7e-23 82.4 0.1 1.9 2 0 0 2 2 2 1 Elongation Factor G, domain II GTP_EFTU_D2 PF03144.25 gi|48477489|ref|YP_023195.1| - 1.5e-14 54.2 1.1 4.2e-14 52.7 1.1 1.9 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|48477489|ref|YP_023195.1| - 0.0019 18.2 0.1 0.0049 17.0 0.1 1.7 1 0 0 1 1 1 1 50S ribosome-binding GTPase RF3_C PF16658.5 gi|48477489|ref|YP_023195.1| - 0.0028 17.5 0.0 0.0068 16.2 0.0 1.6 1 0 0 1 1 1 1 Class II release factor RF3, C-terminal domain Ras PF00071.22 gi|48477489|ref|YP_023195.1| - 0.0099 15.5 0.1 0.019 14.5 0.1 1.4 1 0 0 1 1 1 1 Ras family SRPRB PF09439.10 gi|48477489|ref|YP_023195.1| - 0.06 12.8 0.0 0.17 11.3 0.0 1.7 1 1 0 1 1 1 0 Signal recognition particle receptor beta subunit Septin PF00735.18 gi|48477489|ref|YP_023195.1| - 0.086 12.1 0.3 0.16 11.2 0.3 1.4 1 0 0 1 1 1 0 Septin PALP PF00291.25 gi|48477490|ref|YP_023196.1| - 1.2e-52 179.2 0.0 1.4e-52 179.0 0.0 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme OsmC PF02566.19 gi|48477491|ref|YP_023197.1| - 1.8e-13 50.8 0.0 2.5e-13 50.3 0.0 1.1 1 0 0 1 1 1 1 OsmC-like protein HTH_20 PF12840.7 gi|48477492|ref|YP_023198.1| - 3.3e-07 30.3 0.0 5.4e-07 29.6 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain DUF2250 PF10007.9 gi|48477492|ref|YP_023198.1| - 9e-06 25.7 1.1 0.0033 17.5 0.0 3.5 2 1 1 3 3 3 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_5 PF01022.20 gi|48477492|ref|YP_023198.1| - 6.3e-05 22.8 0.2 0.00016 21.5 0.2 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|48477492|ref|YP_023198.1| - 0.00034 20.1 0.7 0.004 16.7 0.7 2.6 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding Prefoldin_2 PF01920.20 gi|48477492|ref|YP_023198.1| - 0.0059 16.5 1.1 0.011 15.7 1.1 1.5 1 0 0 1 1 1 1 Prefoldin subunit WEMBL PF05701.11 gi|48477492|ref|YP_023198.1| - 0.007 15.1 1.7 0.011 14.4 1.7 1.3 1 0 0 1 1 1 1 Weak chloroplast movement under blue light HTH_11 PF08279.12 gi|48477492|ref|YP_023198.1| - 0.022 14.7 0.1 0.061 13.3 0.1 1.9 1 0 0 1 1 1 0 HTH domain DUF4423 PF14394.6 gi|48477492|ref|YP_023198.1| - 0.031 14.0 0.6 0.18 11.5 0.2 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4423) FeoC PF09012.10 gi|48477492|ref|YP_023198.1| - 0.083 13.0 0.0 0.26 11.4 0.0 1.8 2 0 0 2 2 2 0 FeoC like transcriptional regulator Peripla_BP_2 PF01497.18 gi|48477492|ref|YP_023198.1| - 0.11 12.1 0.1 0.17 11.4 0.1 1.3 1 0 0 1 1 1 0 Periplasmic binding protein MarR PF01047.22 gi|48477492|ref|YP_023198.1| - 0.12 12.3 0.1 0.34 10.9 0.0 1.7 2 0 0 2 2 2 0 MarR family APG17 PF04108.12 gi|48477492|ref|YP_023198.1| - 0.14 11.3 2.4 0.15 11.1 1.6 1.4 1 1 0 1 1 1 0 Autophagy protein Apg17 HSP20 PF00011.21 gi|48477493|ref|YP_023199.1| - 1.9e-11 44.0 1.1 1.8e-09 37.7 1.1 2.2 1 1 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|48477493|ref|YP_023199.1| - 2.3e-06 27.0 0.0 3.7e-06 26.4 0.0 1.3 1 0 0 1 1 1 1 HSP20-like domain found in ArsA CS PF04969.16 gi|48477493|ref|YP_023199.1| - 7.1e-05 23.7 0.8 0.00012 23.0 0.8 1.3 1 0 0 1 1 1 1 CS domain PIH1_CS PF18201.1 gi|48477493|ref|YP_023199.1| - 8.7e-05 22.9 0.0 0.00012 22.4 0.0 1.2 1 0 0 1 1 1 1 PIH1 CS-like domain FKBP26_C PF18046.1 gi|48477493|ref|YP_023199.1| - 0.043 13.9 1.3 1.2 9.3 0.0 2.8 2 1 1 3 3 3 0 FKBP26_C-terminal dCMP_cyt_deam_1 PF00383.23 gi|48477494|ref|YP_023200.1| - 9e-29 99.3 0.5 1.1e-28 99.0 0.5 1.1 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region MafB19-deam PF14437.6 gi|48477494|ref|YP_023200.1| - 1.1e-22 80.2 0.0 1.4e-22 79.9 0.0 1.1 1 0 0 1 1 1 1 MafB19-like deaminase APOBEC3 PF18771.1 gi|48477494|ref|YP_023200.1| - 0.16 12.1 0.0 0.26 11.4 0.0 1.3 1 0 0 1 1 1 0 APOBEC3 tRNA-synt_2c PF01411.19 gi|48477495|ref|YP_023201.1| - 2.2e-93 313.7 0.1 1.2e-92 311.2 0.1 1.9 1 1 0 1 1 1 1 tRNA synthetases class II (A) tRNA_SAD PF07973.14 gi|48477495|ref|YP_023201.1| - 5.9e-14 51.9 0.7 1.6e-13 50.5 0.7 1.8 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain zf-RRN7 PF11781.8 gi|48477495|ref|YP_023201.1| - 0.55 10.0 2.1 0.5 10.1 0.1 1.9 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Peptidase_M50 PF02163.22 gi|48477496|ref|YP_023202.1| - 7.4e-05 22.1 0.2 0.00026 20.4 0.1 1.9 1 1 0 1 1 1 1 Peptidase family M50 Asparaginase_2 PF01112.18 gi|48477497|ref|YP_023203.1| - 5.6e-59 199.6 4.2 8.4e-59 199.1 4.2 1.2 1 1 0 1 1 1 1 Asparaginase Iso_dh PF00180.20 gi|48477498|ref|YP_023204.1| - 3e-19 69.4 0.0 1.4e-11 44.2 0.0 2.1 2 0 0 2 2 2 2 Isocitrate/isopropylmalate dehydrogenase Elf4 PF07011.11 gi|48477498|ref|YP_023204.1| - 0.13 12.2 0.2 0.45 10.5 0.2 1.9 1 0 0 1 1 1 0 Early Flowering 4 domain Lyase_1 PF00206.20 gi|48477499|ref|YP_023205.1| - 4.6e-81 272.6 0.0 5.6e-81 272.3 0.0 1.1 1 0 0 1 1 1 1 Lyase FumaraseC_C PF10415.9 gi|48477499|ref|YP_023205.1| - 2.9e-13 50.0 0.0 7.5e-13 48.7 0.0 1.8 1 0 0 1 1 1 1 Fumarase C C-terminus Phage_XkdX PF09693.10 gi|48477499|ref|YP_023205.1| - 0.015 15.3 0.1 0.041 13.9 0.1 1.8 1 0 0 1 1 1 0 Phage uncharacterised protein (Phage_XkdX) GCN5L1 PF06320.13 gi|48477499|ref|YP_023205.1| - 0.16 12.2 0.0 0.38 10.9 0.0 1.7 1 0 0 1 1 1 0 GCN5-like protein 1 (GCN5L1) HTH_24 PF13412.6 gi|48477500|ref|YP_023206.1| - 6.3e-14 51.3 0.1 1.2e-13 50.4 0.1 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|48477500|ref|YP_023206.1| - 2.5e-12 46.4 0.0 4.8e-12 45.5 0.0 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain AsnC_trans_reg PF01037.21 gi|48477500|ref|YP_023206.1| - 7.4e-10 38.7 0.0 1.1e-09 38.1 0.0 1.3 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_Crp_2 PF13545.6 gi|48477500|ref|YP_023206.1| - 5.2e-06 26.4 0.0 1e-05 25.4 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|48477500|ref|YP_023206.1| - 2.5e-05 23.9 0.4 4.2e-05 23.1 0.0 1.6 2 0 0 2 2 1 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 gi|48477500|ref|YP_023206.1| - 6.1e-05 22.4 0.0 0.00012 21.5 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_DeoR PF08220.12 gi|48477500|ref|YP_023206.1| - 0.00012 21.7 0.1 0.0003 20.5 0.1 1.6 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_11 PF08279.12 gi|48477500|ref|YP_023206.1| - 0.00027 20.8 0.1 0.00053 19.9 0.1 1.5 1 0 0 1 1 1 1 HTH domain HTH_38 PF13936.6 gi|48477500|ref|YP_023206.1| - 0.00031 20.4 0.1 0.00078 19.1 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|48477500|ref|YP_023206.1| - 0.00048 19.9 0.0 0.0009 19.0 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|48477500|ref|YP_023206.1| - 0.0006 19.6 0.0 0.0011 18.8 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_23 PF13384.6 gi|48477500|ref|YP_023206.1| - 0.00066 19.4 0.1 0.002 17.9 0.0 1.8 2 0 0 2 2 1 1 Homeodomain-like domain MarR PF01047.22 gi|48477500|ref|YP_023206.1| - 0.0012 18.7 0.1 0.0033 17.3 0.1 1.7 1 1 0 1 1 1 1 MarR family HTH_36 PF13730.6 gi|48477500|ref|YP_023206.1| - 0.0012 18.8 0.0 0.0022 17.9 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain GerE PF00196.19 gi|48477500|ref|YP_023206.1| - 0.0019 17.7 0.1 0.0035 16.9 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family Phage_rep_O PF04492.13 gi|48477500|ref|YP_023206.1| - 0.0025 18.4 0.0 0.0044 17.6 0.0 1.5 1 0 0 1 1 1 1 Bacteriophage replication protein O HTH_29 PF13551.6 gi|48477500|ref|YP_023206.1| - 0.0027 17.7 0.1 0.0052 16.8 0.1 1.5 1 0 0 1 1 1 1 Winged helix-turn helix GntR PF00392.21 gi|48477500|ref|YP_023206.1| - 0.0028 17.3 0.0 0.0047 16.6 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_Tnp_ISL3 PF13542.6 gi|48477500|ref|YP_023206.1| - 0.003 16.9 0.1 0.0051 16.2 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 HTH_Mga PF08280.11 gi|48477500|ref|YP_023206.1| - 0.0047 16.9 0.0 0.0091 16.0 0.0 1.4 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain Terminase_5 PF06056.12 gi|48477500|ref|YP_023206.1| - 0.0052 16.6 0.2 1.6 8.7 0.0 3.1 3 0 0 3 3 3 1 Putative ATPase subunit of terminase (gpP-like) DUF1670 PF07900.11 gi|48477500|ref|YP_023206.1| - 0.009 15.4 0.0 0.012 14.9 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1670) Rrf2 PF02082.20 gi|48477500|ref|YP_023206.1| - 0.013 15.8 0.1 0.035 14.5 0.0 1.7 2 0 0 2 2 1 0 Transcriptional regulator HTH_20 PF12840.7 gi|48477500|ref|YP_023206.1| - 0.016 15.2 0.0 0.027 14.5 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain Sigma70_ECF PF07638.11 gi|48477500|ref|YP_023206.1| - 0.019 14.9 0.0 0.027 14.4 0.0 1.3 1 0 0 1 1 1 0 ECF sigma factor HTH_17 PF12728.7 gi|48477500|ref|YP_023206.1| - 0.031 14.5 0.0 0.068 13.4 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Phage_antitermQ PF06530.12 gi|48477500|ref|YP_023206.1| - 0.072 13.0 0.2 0.15 11.9 0.1 1.7 1 1 1 2 2 2 0 Phage antitermination protein Q AsnC_trans_reg2 PF17805.1 gi|48477500|ref|YP_023206.1| - 0.079 13.1 0.0 0.2 11.8 0.0 1.7 2 0 0 2 2 2 0 AsnC-like ligand binding domain HTH_28 PF13518.6 gi|48477500|ref|YP_023206.1| - 0.087 13.0 0.1 0.26 11.4 0.0 1.9 2 0 0 2 2 1 0 Helix-turn-helix domain HTH_5 PF01022.20 gi|48477500|ref|YP_023206.1| - 0.15 11.9 0.0 0.27 11.2 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Radical_SAM PF04055.21 gi|48477501|ref|YP_023207.1| - 2.9e-18 66.8 0.1 8.8e-18 65.2 0.0 1.8 2 0 0 2 2 2 1 Radical SAM superfamily UPF0004 PF00919.20 gi|48477501|ref|YP_023207.1| - 1.1e-16 60.7 0.1 2.2e-16 59.7 0.1 1.5 1 0 0 1 1 1 1 Uncharacterized protein family UPF0004 TRAM PF01938.20 gi|48477501|ref|YP_023207.1| - 0.012 15.6 0.0 0.027 14.5 0.0 1.6 1 0 0 1 1 1 0 TRAM domain Diphthamide_syn PF01866.17 gi|48477502|ref|YP_023208.1| - 4.6e-65 220.0 0.1 5.6e-65 219.8 0.1 1.0 1 0 0 1 1 1 1 Putative diphthamide synthesis protein Pyr_redox_2 PF07992.14 gi|48477503|ref|YP_023209.1| - 9e-34 117.0 0.4 1.1e-33 116.7 0.4 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|48477503|ref|YP_023209.1| - 3.1e-25 89.1 3.3 3.4e-23 82.4 3.3 2.1 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|48477503|ref|YP_023209.1| - 2.7e-13 50.3 5.5 1.7e-12 47.7 0.3 2.9 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase K_oxygenase PF13434.6 gi|48477503|ref|YP_023209.1| - 3.5e-10 39.6 0.0 2.1e-07 30.4 0.0 2.9 2 1 1 3 3 3 1 L-lysine 6-monooxygenase (NADPH-requiring) HI0933_like PF03486.14 gi|48477503|ref|YP_023209.1| - 8.8e-08 31.2 0.1 0.056 12.1 0.0 3.8 4 0 0 4 4 4 3 HI0933-like protein FAD_binding_2 PF00890.24 gi|48477503|ref|YP_023209.1| - 1.2e-06 27.9 0.4 0.04 13.0 0.0 3.5 3 1 0 4 4 4 2 FAD binding domain Thi4 PF01946.17 gi|48477503|ref|YP_023209.1| - 7.2e-05 22.1 0.1 0.056 12.7 0.0 2.4 2 0 0 2 2 2 2 Thi4 family NAD_binding_8 PF13450.6 gi|48477503|ref|YP_023209.1| - 0.00049 20.3 0.0 0.045 14.0 0.0 2.4 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|48477503|ref|YP_023209.1| - 0.00076 19.2 2.7 0.12 11.9 0.0 3.1 1 1 2 4 4 4 1 FAD dependent oxidoreductase NAD_binding_9 PF13454.6 gi|48477503|ref|YP_023209.1| - 0.00089 19.3 2.2 4.1 7.4 0.0 3.9 3 1 1 4 4 4 1 FAD-NAD(P)-binding FAD_oxidored PF12831.7 gi|48477503|ref|YP_023209.1| - 0.0016 17.9 0.3 0.32 10.3 0.0 2.6 2 1 0 2 2 2 1 FAD dependent oxidoreductase NAD_binding_7 PF13241.6 gi|48477503|ref|YP_023209.1| - 0.003 18.0 0.2 0.013 16.0 0.1 2.2 2 1 0 2 2 2 1 Putative NAD(P)-binding PFK PF00365.20 gi|48477503|ref|YP_023209.1| - 0.0034 16.8 0.1 0.064 12.6 0.1 2.2 2 0 0 2 2 2 1 Phosphofructokinase FMO-like PF00743.19 gi|48477503|ref|YP_023209.1| - 0.0047 15.4 0.0 0.0077 14.7 0.0 1.4 1 0 0 1 1 1 1 Flavin-binding monooxygenase-like Lycopene_cycl PF05834.12 gi|48477503|ref|YP_023209.1| - 0.0086 15.2 0.1 14 4.6 0.0 3.0 3 0 0 3 3 3 0 Lycopene cyclase protein FAD_binding_3 PF01494.19 gi|48477503|ref|YP_023209.1| - 0.06 12.6 0.0 1.3 8.2 0.0 2.1 2 0 0 2 2 2 0 FAD binding domain DUF4154 PF13689.6 gi|48477503|ref|YP_023209.1| - 0.067 13.4 0.0 0.11 12.7 0.0 1.3 1 0 0 1 1 1 0 YfiR/HmsC-like GIDA PF01134.22 gi|48477503|ref|YP_023209.1| - 0.11 11.5 1.8 39 3.2 0.0 3.7 4 0 0 4 4 4 0 Glucose inhibited division protein A Lactamase_B_2 PF12706.7 gi|48477504|ref|YP_023210.1| - 2.4e-07 30.5 0.0 1.1e-06 28.4 0.0 1.8 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|48477504|ref|YP_023210.1| - 2.1e-06 27.9 0.0 4.4e-06 26.8 0.0 1.6 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily TrmB PF01978.19 gi|48477505|ref|YP_023211.1| - 1.7e-07 31.0 0.3 1.8e-05 24.5 0.1 2.0 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB GntR PF00392.21 gi|48477505|ref|YP_023211.1| - 0.00055 19.5 0.0 0.00094 18.8 0.0 1.5 1 1 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_36 PF13730.6 gi|48477505|ref|YP_023211.1| - 0.00088 19.2 0.0 0.0011 18.8 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|48477505|ref|YP_023211.1| - 0.001 18.9 0.0 0.0013 18.6 0.0 1.1 1 0 0 1 1 1 1 MarR family HTH_41 PF14502.6 gi|48477505|ref|YP_023211.1| - 0.0045 16.6 0.2 0.0097 15.6 0.1 1.6 1 1 1 2 2 2 1 Helix-turn-helix domain MarR PF01047.22 gi|48477505|ref|YP_023211.1| - 0.0068 16.3 0.0 0.0085 16.0 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|48477505|ref|YP_023211.1| - 0.0071 16.8 0.1 0.0078 16.7 0.1 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain Ribosomal_S25 PF03297.15 gi|48477505|ref|YP_023211.1| - 0.0076 16.4 0.1 0.0089 16.2 0.1 1.2 1 0 0 1 1 1 1 S25 ribosomal protein Rrf2 PF02082.20 gi|48477505|ref|YP_023211.1| - 0.014 15.8 0.1 0.015 15.6 0.1 1.1 1 0 0 1 1 1 0 Transcriptional regulator MAGE PF01454.19 gi|48477505|ref|YP_023211.1| - 0.033 13.9 0.0 0.036 13.8 0.0 1.1 1 0 0 1 1 1 0 MAGE family PaaX PF07848.12 gi|48477505|ref|YP_023211.1| - 0.049 13.8 0.1 0.056 13.7 0.1 1.3 1 1 0 1 1 1 0 PaaX-like protein DUF373 PF04123.13 gi|48477506|ref|YP_023212.1| - 6.3e-102 341.5 19.5 8.3e-102 341.1 19.5 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF373) DUF3185 PF11381.8 gi|48477506|ref|YP_023212.1| - 0.29 11.2 8.0 4.3 7.4 0.1 3.5 3 1 0 3 3 3 0 Protein of unknown function (DUF3185) MAF_flag10 PF01973.18 gi|48477507|ref|YP_023213.1| - 8.6e-22 77.6 0.4 1.1e-21 77.2 0.4 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF115 2-ph_phosp PF04029.14 gi|48477508|ref|YP_023214.1| - 1.3e-45 155.3 0.0 4.4e-45 153.6 0.0 1.7 1 1 0 1 1 1 1 2-phosphosulpholactate phosphatase Ribosomal_L11_N PF03946.14 gi|48477509|ref|YP_023215.1| - 6.7e-22 77.1 1.9 1.1e-21 76.4 1.9 1.5 1 0 0 1 1 1 1 Ribosomal protein L11, N-terminal domain Ribosomal_L11 PF00298.19 gi|48477509|ref|YP_023215.1| - 3.5e-19 69.1 1.7 5.6e-19 68.4 1.7 1.3 1 0 0 1 1 1 1 Ribosomal protein L11, RNA binding domain Ribosomal_L1 PF00687.21 gi|48477510|ref|YP_023216.1| - 1.6e-40 139.0 0.7 2e-40 138.7 0.7 1.0 1 0 0 1 1 1 1 Ribosomal protein L1p/L10e family Antimicrobial24 PF16049.5 gi|48477510|ref|YP_023216.1| - 0.11 12.5 0.2 0.24 11.4 0.2 1.6 1 0 0 1 1 1 0 Frog antimicrobial peptide Ribosomal_L10 PF00466.20 gi|48477511|ref|YP_023217.1| - 1.3e-22 79.8 1.7 2.4e-22 79.0 1.7 1.4 1 0 0 1 1 1 1 Ribosomal protein L10 RL10P_insert PF17777.1 gi|48477511|ref|YP_023217.1| - 2e-20 72.6 0.2 4e-20 71.6 0.2 1.5 1 0 0 1 1 1 1 Insertion domain in 60S ribosomal protein L10P Ribosomal_60s PF00428.19 gi|48477511|ref|YP_023217.1| - 0.094 13.3 10.9 0.05 14.2 7.1 2.5 2 1 0 2 2 2 0 60s Acidic ribosomal protein Ribosomal_60s PF00428.19 gi|48477512|ref|YP_023218.1| - 1.1e-17 64.4 14.7 1.3e-17 64.2 14.7 1.1 1 0 0 1 1 1 1 60s Acidic ribosomal protein EF-hand_14 PF17959.1 gi|48477512|ref|YP_023218.1| - 0.0092 16.3 1.6 0.02 15.2 1.6 1.7 1 1 0 1 1 1 1 EF-hand domain TFB6 PF17110.5 gi|48477512|ref|YP_023218.1| - 0.036 13.8 1.0 0.04 13.7 1.0 1.1 1 0 0 1 1 1 0 Subunit 11 of the general transcription factor TFIIH Peptidase_S49_N PF08496.10 gi|48477512|ref|YP_023218.1| - 0.06 13.4 4.2 0.065 13.3 4.2 1.2 1 0 0 1 1 1 0 Peptidase family S49 N-terminal DUF3824 PF12868.7 gi|48477512|ref|YP_023218.1| - 0.061 14.0 3.3 0.078 13.6 3.3 1.1 1 0 0 1 1 1 0 Domain of unknwon function (DUF3824) DUF4366 PF14283.6 gi|48477512|ref|YP_023218.1| - 0.34 11.0 6.5 0.42 10.6 6.5 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4366) YqzE PF14038.6 gi|48477512|ref|YP_023218.1| - 0.58 10.2 2.8 0.96 9.5 2.8 1.4 1 0 0 1 1 1 0 YqzE-like protein U1snRNP70_N PF12220.8 gi|48477512|ref|YP_023218.1| - 0.73 10.5 9.4 0.74 10.5 9.0 1.3 1 1 0 1 1 1 0 U1 small nuclear ribonucleoprotein of 70kDa MW N terminal Cytomega_UL84 PF06284.11 gi|48477512|ref|YP_023218.1| - 1.8 6.9 4.3 2 6.8 4.3 1.1 1 0 0 1 1 1 0 Cytomegalovirus UL84 protein DUF3408 PF11888.8 gi|48477512|ref|YP_023218.1| - 6 7.0 11.1 9.6 6.3 11.1 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3408) Oleosin PF01277.17 gi|48477513|ref|YP_023219.1| - 0.056 13.2 4.3 0.061 13.1 4.3 1.1 1 0 0 1 1 1 0 Oleosin RseC_MucC PF04246.12 gi|48477513|ref|YP_023219.1| - 3.5 7.6 6.0 5.2 7.0 6.0 1.4 1 1 0 1 1 1 0 Positive regulator of sigma(E), RseC/MucC AhpC-TSA PF00578.21 gi|48477514|ref|YP_023220.1| - 1.5e-39 134.8 0.1 1.7e-39 134.5 0.1 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|48477514|ref|YP_023220.1| - 2.4e-25 89.0 0.2 3e-25 88.7 0.2 1.0 1 0 0 1 1 1 1 Redoxin SCO1-SenC PF02630.14 gi|48477514|ref|YP_023220.1| - 7e-06 26.0 0.1 1.1e-05 25.3 0.1 1.3 1 1 0 1 1 1 1 SCO1/SenC Thioredoxin_8 PF13905.6 gi|48477514|ref|YP_023220.1| - 8.5e-05 22.8 0.2 0.00016 21.9 0.2 1.5 1 0 0 1 1 1 1 Thioredoxin-like ATR13 PF16829.5 gi|48477514|ref|YP_023220.1| - 0.064 13.6 0.7 0.089 13.2 0.7 1.3 1 0 0 1 1 1 0 Avirulence protein ATR13, RxLR effector DUF3081 PF11280.8 gi|48477514|ref|YP_023220.1| - 0.071 12.9 0.7 2.4 8.1 0.1 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF3081) Carot_N PF09150.10 gi|48477514|ref|YP_023220.1| - 0.073 12.9 0.0 0.1 12.5 0.0 1.2 1 0 0 1 1 1 0 Orange carotenoid protein, N-terminal AhpC-TSA_2 PF13911.6 gi|48477514|ref|YP_023220.1| - 0.091 12.9 0.0 0.15 12.2 0.0 1.5 1 1 0 1 1 1 0 AhpC/TSA antioxidant enzyme DUF1947 PF09183.10 gi|48477515|ref|YP_023221.1| - 4.8e-20 71.6 0.9 4.8e-20 71.6 0.9 1.7 2 0 0 2 2 2 1 Domain of unknown function (DUF1947) PUA PF01472.20 gi|48477515|ref|YP_023221.1| - 7.5e-13 48.3 0.2 1.3e-12 47.4 0.1 1.4 2 0 0 2 2 2 1 PUA domain UPF0113 PF03657.13 gi|48477515|ref|YP_023221.1| - 0.019 15.2 0.0 0.04 14.2 0.0 1.5 1 0 0 1 1 1 0 UPF0113 PUA domain Phage_X PF05155.15 gi|48477515|ref|YP_023221.1| - 0.038 14.4 0.2 0.1 13.1 0.2 1.8 1 1 0 1 1 1 0 Phage X family LVIVD PF08309.11 gi|48477515|ref|YP_023221.1| - 0.039 13.3 0.3 6.7 6.1 0.0 2.9 3 0 0 3 3 3 0 LVIVD repeat DUF5450 PF17529.2 gi|48477515|ref|YP_023221.1| - 0.04 14.0 0.0 0.046 13.9 0.0 1.2 1 0 0 1 1 1 0 Family of unknown function (DUF5450) BRCA-2_OB3 PF09104.10 gi|48477515|ref|YP_023221.1| - 0.078 12.6 0.0 0.16 11.7 0.0 1.4 1 0 0 1 1 1 0 BRCA2, oligonucleotide/oligosaccharide-binding, domain 3 ANT PF03374.14 gi|48477516|ref|YP_023222.1| - 0.016 15.5 0.0 0.08 13.3 0.0 2.1 2 0 0 2 2 2 0 Phage antirepressor protein KilAC domain Spt5-NGN PF03439.13 gi|48477517|ref|YP_023223.1| - 2.7e-18 65.6 0.3 5.8e-18 64.6 0.3 1.6 1 0 0 1 1 1 1 Early transcription elongation factor of RNA pol II, NGN section KOW PF00467.29 gi|48477517|ref|YP_023223.1| - 3.3e-07 30.0 0.0 7.9e-07 28.8 0.0 1.7 1 0 0 1 1 1 1 KOW motif Top6b_C PF18000.1 gi|48477517|ref|YP_023223.1| - 0.016 15.3 0.1 0.044 14.0 0.1 1.7 1 0 0 1 1 1 0 Type 2 DNA topoisomerase 6 subunit B C-terminal domain DUF5599 PF18141.1 gi|48477517|ref|YP_023223.1| - 0.059 13.6 0.4 15 5.9 0.1 2.5 2 1 0 2 2 2 0 Domain of unknown function (DUF5599) DUF916 PF06030.12 gi|48477517|ref|YP_023223.1| - 0.24 11.4 1.1 0.44 10.6 0.1 1.9 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF916) SecE PF00584.20 gi|48477518|ref|YP_023224.1| - 0.00025 20.9 0.1 0.00034 20.5 0.1 1.2 1 0 0 1 1 1 1 SecE/Sec61-gamma subunits of protein translocation complex CPP1-like PF11833.8 gi|48477519|ref|YP_023225.1| - 0.99 9.0 2.8 12 5.5 0.3 2.4 2 1 0 2 2 2 0 Protein CHAPERONE-LIKE PROTEIN OF POR1-like adh_short_C2 PF13561.6 gi|48477520|ref|YP_023226.1| - 6.5e-50 169.9 0.1 8.3e-50 169.5 0.1 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|48477520|ref|YP_023226.1| - 5.2e-38 130.5 0.0 7.9e-38 129.9 0.0 1.2 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|48477520|ref|YP_023226.1| - 1.1e-06 28.7 0.0 1.5e-06 28.2 0.0 1.3 1 0 0 1 1 1 1 KR domain Polysacc_synt_2 PF02719.15 gi|48477520|ref|YP_023226.1| - 0.0057 15.8 0.0 0.0083 15.3 0.0 1.3 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein Methyltransf_31 PF13847.6 gi|48477520|ref|YP_023226.1| - 0.083 12.7 0.1 0.22 11.3 0.1 1.7 1 1 0 1 1 1 0 Methyltransferase domain MFS_1 PF07690.16 gi|48477521|ref|YP_023227.1| - 5e-50 170.4 59.2 3.5e-49 167.6 53.2 3.2 2 1 0 2 2 2 2 Major Facilitator Superfamily MFS_3 PF05977.13 gi|48477521|ref|YP_023227.1| - 0.00084 17.8 6.2 0.00084 17.8 6.2 2.5 3 0 0 3 3 3 2 Transmembrane secretion effector Sugar_tr PF00083.24 gi|48477521|ref|YP_023227.1| - 0.0017 17.3 17.3 0.0017 17.3 17.3 3.5 2 1 2 4 4 4 2 Sugar (and other) transporter Gly-zipper_YMGG PF13441.6 gi|48477521|ref|YP_023227.1| - 3 7.7 6.3 1.7 8.4 3.2 2.3 2 0 0 2 2 2 0 YMGG-like Gly-zipper DUF357 PF04010.13 gi|48477522|ref|YP_023228.1| - 6.9e-29 99.7 0.7 8e-29 99.5 0.7 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF357) Flu_NS2 PF00601.19 gi|48477522|ref|YP_023228.1| - 0.17 12.2 0.0 0.2 12.0 0.0 1.1 1 0 0 1 1 1 0 Influenza non-structural protein (NS2) RmuC PF02646.16 gi|48477523|ref|YP_023229.1| - 2.4e-77 260.0 0.1 3.5e-77 259.4 0.1 1.2 1 0 0 1 1 1 1 RmuC family Endonuc-FokI_C PF09254.11 gi|48477523|ref|YP_023229.1| - 0.0015 17.9 0.0 0.0023 17.2 0.0 1.5 1 0 0 1 1 1 1 Restriction endonuclease FokI, C terminal CREPT PF16566.5 gi|48477523|ref|YP_023229.1| - 0.016 15.3 6.0 0.061 13.5 0.1 2.6 3 0 0 3 3 3 0 Cell-cycle alteration and expression-elevated protein in tumour AI-2E_transport PF01594.16 gi|48477523|ref|YP_023229.1| - 0.034 13.3 1.8 1.7 7.7 0.4 2.4 2 0 0 2 2 2 0 AI-2E family transporter Clat_adaptor_s PF01217.20 gi|48477523|ref|YP_023229.1| - 0.037 14.0 6.2 0.092 12.7 1.5 2.4 2 0 0 2 2 2 0 Clathrin adaptor complex small chain MEIOC PF15189.6 gi|48477523|ref|YP_023229.1| - 0.062 12.9 0.5 0.14 11.7 0.5 1.6 1 0 0 1 1 1 0 Meiosis-specific coiled-coil domain-containing protein MEIOC Filament PF00038.21 gi|48477523|ref|YP_023229.1| - 0.082 12.5 8.1 0.14 11.7 0.1 2.7 3 0 0 3 3 3 0 Intermediate filament protein DUF948 PF06103.11 gi|48477523|ref|YP_023229.1| - 0.13 12.5 1.9 59 4.0 0.0 4.4 3 2 1 4 4 4 0 Bacterial protein of unknown function (DUF948) TelA PF05816.11 gi|48477523|ref|YP_023229.1| - 0.14 11.2 5.0 0.27 10.3 0.1 2.2 2 0 0 2 2 2 0 Toxic anion resistance protein (TelA) Syntaxin_2 PF14523.6 gi|48477523|ref|YP_023229.1| - 0.16 12.4 8.8 9.1 6.7 0.0 4.1 3 1 1 4 4 4 0 Syntaxin-like protein Prominin PF05478.11 gi|48477523|ref|YP_023229.1| - 0.26 9.2 7.4 0.098 10.6 2.3 2.3 2 2 0 2 2 2 0 Prominin DUF2408 PF10303.9 gi|48477523|ref|YP_023229.1| - 0.56 10.8 6.1 0.89 10.1 0.8 3.3 2 2 1 3 3 3 0 Protein of unknown function (DUF2408) RSS_P20 PF11757.8 gi|48477523|ref|YP_023229.1| - 1.1 9.7 0.0 1.1 9.7 0.0 3.5 3 1 0 4 4 4 0 Suppressor of RNA silencing P21-like N-terminal domain RTX PF02382.15 gi|48477523|ref|YP_023229.1| - 1.5 8.4 3.5 7.9 6.1 1.7 2.5 2 1 0 2 2 2 0 N-terminal domain in RTX protein Sulfolobus_pRN PF05584.11 gi|48477524|ref|YP_023230.1| - 0.037 14.1 0.1 0.041 13.9 0.1 1.2 1 0 0 1 1 1 0 Sulfolobus plasmid regulatory protein VKOR PF07884.14 gi|48477525|ref|YP_023231.1| - 0.079 13.1 3.8 0.12 12.6 3.8 1.2 1 0 0 1 1 1 0 Vitamin K epoxide reductase family TGT PF01702.18 gi|48477526|ref|YP_023232.1| - 1.5e-63 215.1 0.0 2.2e-63 214.6 0.0 1.2 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase TGT_C2 PF14810.6 gi|48477526|ref|YP_023232.1| - 1e-14 54.4 0.0 2.1e-14 53.4 0.0 1.6 1 0 0 1 1 1 1 Patch-forming domain C2 of tRNA-guanine transglycosylase PUA PF01472.20 gi|48477526|ref|YP_023232.1| - 1.9e-11 43.7 0.1 1.7e-10 40.7 0.1 2.2 2 0 0 2 2 2 1 PUA domain HTH_27 PF13463.6 gi|48477527|ref|YP_023233.1| - 2.4e-05 24.7 0.0 2.9e-05 24.5 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_24 PF13412.6 gi|48477527|ref|YP_023233.1| - 0.00014 21.4 0.0 0.00016 21.2 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|48477527|ref|YP_023233.1| - 0.00058 19.7 0.0 0.0008 19.2 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|48477527|ref|YP_023233.1| - 0.0014 18.5 0.0 0.0016 18.3 0.0 1.1 1 0 0 1 1 1 1 MarR family HTH_41 PF14502.6 gi|48477527|ref|YP_023233.1| - 0.0022 17.7 0.1 0.0032 17.1 0.1 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain DDRGK PF09756.9 gi|48477527|ref|YP_023233.1| - 0.0044 16.6 0.1 0.0044 16.6 0.1 1.0 1 0 0 1 1 1 1 DDRGK domain HTH_11 PF08279.12 gi|48477527|ref|YP_023233.1| - 0.0071 16.3 0.1 0.0089 15.9 0.1 1.2 1 0 0 1 1 1 1 HTH domain MarR PF01047.22 gi|48477527|ref|YP_023233.1| - 0.01 15.7 0.1 0.014 15.4 0.1 1.1 1 0 0 1 1 1 0 MarR family HTH_20 PF12840.7 gi|48477527|ref|YP_023233.1| - 0.019 15.0 0.0 0.026 14.6 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_36 PF13730.6 gi|48477527|ref|YP_023233.1| - 0.031 14.2 0.4 0.058 13.4 0.2 1.5 1 1 0 1 1 1 0 Helix-turn-helix domain TrmB PF01978.19 gi|48477527|ref|YP_023233.1| - 0.034 14.0 0.0 0.037 13.9 0.0 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB AAA PF00004.29 gi|48477528|ref|YP_023234.1| - 2e-101 335.6 0.0 2.6e-49 167.0 0.0 2.6 3 0 0 3 3 2 2 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|48477528|ref|YP_023234.1| - 1.3e-30 104.9 0.1 2.9e-17 62.2 0.0 2.7 2 0 0 2 2 2 2 AAA+ lid domain CDC48_N PF02359.18 gi|48477528|ref|YP_023234.1| - 3.4e-24 84.8 0.5 8.1e-23 80.4 2.0 2.6 3 0 0 3 3 1 1 Cell division protein 48 (CDC48), N-terminal domain AAA_2 PF07724.14 gi|48477528|ref|YP_023234.1| - 1.8e-17 64.0 0.0 1.5e-07 31.7 0.0 2.6 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) RuvB_N PF05496.12 gi|48477528|ref|YP_023234.1| - 9.7e-16 57.9 0.0 1.3e-07 31.5 0.0 2.7 2 0 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|48477528|ref|YP_023234.1| - 8e-14 52.4 0.1 5.4e-06 26.9 0.0 3.2 2 2 0 2 2 2 2 AAA ATPase domain AAA_5 PF07728.14 gi|48477528|ref|YP_023234.1| - 7.6e-13 48.6 0.4 7e-05 22.8 0.1 3.9 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) TIP49 PF06068.13 gi|48477528|ref|YP_023234.1| - 5.4e-12 45.6 0.7 9.6e-05 21.7 0.0 3.5 4 0 0 4 4 4 2 TIP49 P-loop domain AAA_14 PF13173.6 gi|48477528|ref|YP_023234.1| - 2.7e-11 43.6 0.0 1.9e-05 24.7 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_22 PF13401.6 gi|48477528|ref|YP_023234.1| - 3.4e-10 40.3 1.3 0.0089 16.3 0.0 4.2 3 2 2 5 5 4 2 AAA domain AAA_18 PF13238.6 gi|48477528|ref|YP_023234.1| - 1e-09 39.0 0.0 0.008 16.7 0.0 3.6 3 0 0 3 3 3 2 AAA domain AAA_33 PF13671.6 gi|48477528|ref|YP_023234.1| - 1.6e-08 34.8 0.0 0.0015 18.7 0.0 2.5 2 0 0 2 2 2 2 AAA domain CDC48_2 PF02933.17 gi|48477528|ref|YP_023234.1| - 2.7e-08 33.4 0.2 6.4e-08 32.3 0.2 1.7 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), domain 2 Sigma54_activat PF00158.26 gi|48477528|ref|YP_023234.1| - 1e-07 31.8 0.1 0.049 13.3 0.0 3.9 2 2 0 2 2 2 2 Sigma-54 interaction domain IstB_IS21 PF01695.17 gi|48477528|ref|YP_023234.1| - 3.6e-07 30.1 0.0 0.017 14.8 0.0 2.4 2 0 0 2 2 2 2 IstB-like ATP binding protein RNA_helicase PF00910.22 gi|48477528|ref|YP_023234.1| - 4.6e-07 30.2 0.0 0.031 14.7 0.0 2.6 2 0 0 2 2 2 2 RNA helicase AAA_3 PF07726.11 gi|48477528|ref|YP_023234.1| - 5.7e-07 29.4 0.0 0.009 15.9 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.6 gi|48477528|ref|YP_023234.1| - 1e-06 29.1 0.0 0.017 15.4 0.0 2.4 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.21 gi|48477528|ref|YP_023234.1| - 1.9e-06 27.4 0.3 0.059 12.7 0.0 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_7 PF12775.7 gi|48477528|ref|YP_023234.1| - 3e-06 26.9 0.0 0.084 12.4 0.0 2.5 2 1 0 2 2 2 2 P-loop containing dynein motor region Vps4_C PF09336.10 gi|48477528|ref|YP_023234.1| - 4.9e-06 26.4 1.4 0.0089 16.0 0.0 3.6 3 0 0 3 3 3 1 Vps4 C terminal oligomerisation domain AAA_24 PF13479.6 gi|48477528|ref|YP_023234.1| - 6.9e-06 25.9 0.0 0.068 12.9 0.0 2.7 2 1 0 2 2 2 2 AAA domain AAA_25 PF13481.6 gi|48477528|ref|YP_023234.1| - 7.5e-06 25.6 3.2 2.3 7.7 0.0 4.4 4 0 0 4 4 4 1 AAA domain Zeta_toxin PF06414.12 gi|48477528|ref|YP_023234.1| - 8.5e-06 25.2 0.1 0.11 11.7 0.0 2.7 3 0 0 3 3 2 2 Zeta toxin DUF2075 PF09848.9 gi|48477528|ref|YP_023234.1| - 8.7e-06 25.2 0.0 0.019 14.2 0.0 2.2 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) ATPase PF06745.13 gi|48477528|ref|YP_023234.1| - 1.4e-05 24.6 3.6 0.3 10.4 0.1 3.7 2 2 1 4 4 4 2 KaiC TsaE PF02367.17 gi|48477528|ref|YP_023234.1| - 2.4e-05 24.3 0.0 0.15 12.0 0.0 2.4 2 0 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_11 PF13086.6 gi|48477528|ref|YP_023234.1| - 3.2e-05 23.9 0.0 0.094 12.5 0.0 2.3 2 0 0 2 2 2 2 AAA domain ABC_tran PF00005.27 gi|48477528|ref|YP_023234.1| - 7.1e-05 23.3 0.0 0.33 11.5 0.0 2.4 2 0 0 2 2 2 2 ABC transporter T2SSE PF00437.20 gi|48477528|ref|YP_023234.1| - 0.00014 21.0 0.2 5.4 6.0 0.1 3.4 2 1 1 3 3 3 0 Type II/IV secretion system protein Sigma54_activ_2 PF14532.6 gi|48477528|ref|YP_023234.1| - 0.00018 21.6 0.0 0.13 12.4 0.0 2.5 2 0 0 2 2 2 1 Sigma-54 interaction domain DUF815 PF05673.13 gi|48477528|ref|YP_023234.1| - 0.00036 19.8 0.0 0.25 10.5 0.0 2.4 2 0 0 2 2 2 2 Protein of unknown function (DUF815) AAA_30 PF13604.6 gi|48477528|ref|YP_023234.1| - 0.00043 20.0 0.1 0.87 9.3 0.0 2.9 2 0 0 2 2 2 2 AAA domain AAA_17 PF13207.6 gi|48477528|ref|YP_023234.1| - 0.00056 20.3 0.0 1.5 9.2 0.0 2.8 2 0 0 2 2 2 2 AAA domain PhoH PF02562.16 gi|48477528|ref|YP_023234.1| - 0.0007 19.1 2.2 0.78 9.2 0.0 2.8 3 0 0 3 3 2 2 PhoH-like protein ATPase_2 PF01637.18 gi|48477528|ref|YP_023234.1| - 0.0011 18.9 0.4 2.8 7.8 0.1 3.1 2 2 1 3 3 3 1 ATPase domain predominantly from Archaea AAA_19 PF13245.6 gi|48477528|ref|YP_023234.1| - 0.0014 19.0 1.1 2 8.8 0.3 2.9 2 1 1 3 3 2 1 AAA domain Parvo_NS1 PF01057.17 gi|48477528|ref|YP_023234.1| - 0.0014 17.8 0.1 1.1 8.3 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 NB-ARC PF00931.22 gi|48477528|ref|YP_023234.1| - 0.0015 17.8 0.1 1.7 7.8 0.0 2.7 3 0 0 3 3 2 2 NB-ARC domain NTPase_1 PF03266.15 gi|48477528|ref|YP_023234.1| - 0.0026 17.7 4.6 4.2 7.2 0.0 4.3 3 1 1 4 4 4 0 NTPase Cytidylate_kin2 PF13189.6 gi|48477528|ref|YP_023234.1| - 0.0028 17.8 0.0 0.17 12.0 0.0 2.5 2 0 0 2 2 2 1 Cytidylate kinase-like family NACHT PF05729.12 gi|48477528|ref|YP_023234.1| - 0.0035 17.3 0.4 4.2 7.3 0.0 3.4 4 0 0 4 4 3 0 NACHT domain Guanylate_kin PF00625.21 gi|48477528|ref|YP_023234.1| - 0.0045 16.7 0.6 26 4.4 0.0 4.8 3 2 2 5 5 5 0 Guanylate kinase Rad17 PF03215.15 gi|48477528|ref|YP_023234.1| - 0.0056 16.6 0.1 1.3 9.0 0.1 2.8 2 1 0 2 2 2 1 Rad17 P-loop domain Viral_helicase1 PF01443.18 gi|48477528|ref|YP_023234.1| - 0.0066 16.2 0.0 1.1 9.0 0.0 2.3 2 0 0 2 2 2 1 Viral (Superfamily 1) RNA helicase TniB PF05621.11 gi|48477528|ref|YP_023234.1| - 0.0069 15.8 0.2 20 4.5 0.0 4.0 3 2 2 5 5 5 0 Bacterial TniB protein SKI PF01202.22 gi|48477528|ref|YP_023234.1| - 0.011 15.9 0.0 5.1 7.2 0.0 2.6 2 0 0 2 2 2 0 Shikimate kinase Cytidylate_kin PF02224.18 gi|48477528|ref|YP_023234.1| - 0.014 15.1 0.2 6.2 6.5 0.1 2.4 2 0 0 2 2 2 0 Cytidylate kinase ATP-synt_ab PF00006.25 gi|48477528|ref|YP_023234.1| - 0.015 14.9 0.0 2.7 7.6 0.0 2.5 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain IL4 PF00727.18 gi|48477528|ref|YP_023234.1| - 0.023 14.9 0.0 12 6.1 0.0 2.7 2 0 0 2 2 2 0 Interleukin 4 AAA_29 PF13555.6 gi|48477528|ref|YP_023234.1| - 0.04 13.7 0.0 13 5.6 0.0 2.4 2 0 0 2 2 2 0 P-loop containing region of AAA domain Bac_DnaA PF00308.18 gi|48477528|ref|YP_023234.1| - 0.051 13.4 0.0 1.8 8.4 0.0 2.6 2 1 0 2 2 2 0 Bacterial dnaA protein ResIII PF04851.15 gi|48477528|ref|YP_023234.1| - 0.068 13.2 0.0 15 5.6 0.0 2.6 2 1 0 2 2 2 0 Type III restriction enzyme, res subunit IPT PF01745.16 gi|48477528|ref|YP_023234.1| - 0.13 11.7 0.1 5.6 6.3 0.0 2.3 2 0 0 2 2 2 0 Isopentenyl transferase YCII PF03795.14 gi|48477528|ref|YP_023234.1| - 0.17 12.3 0.0 0.58 10.6 0.0 1.9 2 0 0 2 2 1 0 YCII-related domain HTH_5 PF01022.20 gi|48477529|ref|YP_023235.1| - 1.1e-06 28.3 0.1 1.6e-06 27.9 0.1 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_45 PF14947.6 gi|48477529|ref|YP_023235.1| - 0.0045 17.0 0.3 0.024 14.6 0.2 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix Phage_rep_org_N PF09681.10 gi|48477529|ref|YP_023235.1| - 0.027 14.4 0.1 0.03 14.3 0.1 1.1 1 0 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) Phage_holin_3_6 PF07332.11 gi|48477530|ref|YP_023236.1| - 0.018 15.1 0.0 0.021 14.9 0.0 1.1 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III DUF3810 PF12725.7 gi|48477530|ref|YP_023236.1| - 0.26 10.6 1.9 0.26 10.6 1.4 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3810) MFS_1 PF07690.16 gi|48477531|ref|YP_023237.1| - 1.3e-22 80.2 79.1 1.1e-18 67.3 44.9 1.9 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|48477531|ref|YP_023237.1| - 6e-10 38.6 41.7 1.8e-07 30.4 15.4 2.9 2 1 0 2 2 2 2 Sugar (and other) transporter TRI12 PF06609.13 gi|48477531|ref|YP_023237.1| - 6.3e-05 21.6 17.2 9.9e-05 20.9 5.1 2.2 2 0 0 2 2 2 2 Fungal trichothecene efflux pump (TRI12) Peptidase_C54 PF03416.19 gi|48477531|ref|YP_023237.1| - 0.12 11.8 0.1 0.14 11.5 0.1 1.2 1 0 0 1 1 1 0 Peptidase family C54 TMEM239 PF15841.5 gi|48477531|ref|YP_023237.1| - 1.2 9.0 6.4 0.55 10.1 1.9 2.5 2 0 0 2 2 2 0 Transmembrane protein 239 family Glyoxalase_2 PF12681.7 gi|48477532|ref|YP_023238.1| - 0.0021 18.0 2.1 0.0053 16.7 2.1 1.6 1 1 0 1 1 1 1 Glyoxalase-like domain Glyoxalase PF00903.25 gi|48477532|ref|YP_023238.1| - 0.021 15.0 0.4 0.31 11.2 0.4 2.0 1 1 0 1 1 1 0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Hydantoinase_B PF02538.14 gi|48477533|ref|YP_023239.1| - 1.5e-164 548.2 0.0 1.7e-164 548.1 0.0 1.0 1 0 0 1 1 1 1 Hydantoinase B/oxoprolinase Hydantoinase_A PF01968.18 gi|48477534|ref|YP_023240.1| - 2.6e-91 305.9 0.2 1.2e-88 297.2 0.0 2.3 2 0 0 2 2 2 2 Hydantoinase/oxoprolinase Hydant_A_N PF05378.13 gi|48477534|ref|YP_023240.1| - 1.7e-50 171.2 0.0 3.3e-50 170.3 0.0 1.5 1 0 0 1 1 1 1 Hydantoinase/oxoprolinase N-terminal region MutL PF13941.6 gi|48477534|ref|YP_023240.1| - 0.0058 15.3 0.6 3.6 6.1 0.0 2.9 2 1 1 3 3 3 2 MutL protein FtsA PF14450.6 gi|48477534|ref|YP_023240.1| - 0.06 13.8 0.1 0.16 12.4 0.1 1.9 1 1 0 1 1 1 0 Cell division protein FtsA MFS_1 PF07690.16 gi|48477535|ref|YP_023241.1| - 1.1e-34 119.9 36.3 1.5e-25 89.9 14.5 2.9 2 1 1 3 3 3 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|48477535|ref|YP_023241.1| - 5.4e-09 35.4 13.1 5.4e-09 35.4 13.1 3.0 2 1 0 3 3 3 2 Sugar (and other) transporter HIT PF01230.23 gi|48477536|ref|YP_023242.1| - 9.8e-25 87.2 0.3 1.6e-24 86.5 0.3 1.3 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.8 gi|48477536|ref|YP_023242.1| - 7.7e-12 45.7 2.8 1.2e-11 45.1 1.8 1.7 1 1 1 2 2 2 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.15 gi|48477536|ref|YP_023242.1| - 1.8e-06 27.8 0.7 2.7e-06 27.3 0.7 1.3 1 1 0 1 1 1 1 Protein similar to CwfJ C-terminus 1 EFP PF01132.20 gi|48477536|ref|YP_023242.1| - 0.1 12.6 0.0 0.19 11.8 0.0 1.5 1 0 0 1 1 1 0 Elongation factor P (EF-P) OB domain Pribosyltran PF00156.27 gi|48477537|ref|YP_023243.1| - 8.3e-13 48.2 0.1 1.5e-12 47.3 0.1 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain Sigma70_r4_2 PF08281.12 gi|48477537|ref|YP_023243.1| - 0.00015 21.4 0.0 0.00036 20.1 0.0 1.7 1 0 0 1 1 1 1 Sigma-70, region 4 PRTase_2 PF15609.6 gi|48477537|ref|YP_023243.1| - 0.0031 17.1 0.0 0.0053 16.3 0.0 1.4 1 0 0 1 1 1 1 Phosphoribosyl transferase HTH_23 PF13384.6 gi|48477537|ref|YP_023243.1| - 0.0032 17.2 0.0 0.0077 16.0 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_24 PF13412.6 gi|48477537|ref|YP_023243.1| - 0.0033 16.9 0.0 0.0077 15.8 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding UPRTase PF14681.6 gi|48477537|ref|YP_023243.1| - 0.004 16.6 0.0 0.0065 15.9 0.0 1.3 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase GerE PF00196.19 gi|48477537|ref|YP_023243.1| - 0.0071 15.9 0.9 0.024 14.2 0.1 2.2 2 0 0 2 2 2 1 Bacterial regulatory proteins, luxR family DUF2802 PF10975.8 gi|48477537|ref|YP_023243.1| - 0.038 14.1 0.0 0.077 13.1 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2802) TnsD PF15978.5 gi|48477537|ref|YP_023243.1| - 0.061 12.3 0.2 0.13 11.2 0.1 1.5 2 0 0 2 2 2 0 Tn7-like transposition protein D HTH_7 PF02796.15 gi|48477537|ref|YP_023243.1| - 0.1 12.7 0.0 0.25 11.5 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase tRNA-synt_1f PF01921.18 gi|48477538|ref|YP_023244.1| - 1.2e-121 406.1 0.0 1.4e-121 405.8 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (K) tRNA-synt_1g PF09334.11 gi|48477538|ref|YP_023244.1| - 0.0055 15.5 0.0 1.6 7.4 0.0 2.5 3 0 0 3 3 3 2 tRNA synthetases class I (M) KH_5 PF13184.6 gi|48477538|ref|YP_023244.1| - 0.097 12.8 0.1 0.25 11.4 0.1 1.7 1 0 0 1 1 1 0 NusA-like KH domain tRNA-synt_1b PF00579.25 gi|48477538|ref|YP_023244.1| - 0.11 11.8 0.0 2 7.7 0.0 2.3 2 0 0 2 2 2 0 tRNA synthetases class I (W and Y) ParA PF10609.9 gi|48477539|ref|YP_023245.1| - 3.2e-93 311.7 0.2 3.9e-93 311.4 0.2 1.0 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|48477539|ref|YP_023245.1| - 1.1e-15 57.9 0.0 1.7e-15 57.2 0.0 1.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|48477539|ref|YP_023245.1| - 8.1e-09 35.6 2.4 9.7e-08 32.1 2.4 2.0 1 1 0 1 1 1 1 AAA domain ArsA_ATPase PF02374.15 gi|48477539|ref|YP_023245.1| - 8.5e-07 28.4 0.5 4.1e-06 26.2 0.4 2.0 2 0 0 2 2 2 1 Anion-transporting ATPase MipZ PF09140.11 gi|48477539|ref|YP_023245.1| - 5e-06 26.0 0.2 7.4e-06 25.4 0.2 1.3 1 1 0 1 1 1 1 ATPase MipZ AAA_26 PF13500.6 gi|48477539|ref|YP_023245.1| - 2.5e-05 24.2 0.6 0.049 13.5 0.0 2.2 2 0 0 2 2 2 2 AAA domain Fer4_NifH PF00142.18 gi|48477539|ref|YP_023245.1| - 0.00016 21.2 0.4 0.013 15.0 0.1 2.4 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_25 PF13481.6 gi|48477539|ref|YP_023245.1| - 0.00023 20.8 0.0 0.00033 20.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain VirC1 PF07015.11 gi|48477539|ref|YP_023245.1| - 0.0063 15.8 0.1 0.011 15.1 0.1 1.2 1 0 0 1 1 1 1 VirC1 protein SRP54 PF00448.22 gi|48477539|ref|YP_023245.1| - 0.019 14.6 0.1 0.033 13.8 0.1 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain APS_kinase PF01583.20 gi|48477539|ref|YP_023245.1| - 0.021 14.7 0.0 0.032 14.1 0.0 1.3 1 0 0 1 1 1 0 Adenylylsulphate kinase DUF1610 PF07754.11 gi|48477539|ref|YP_023245.1| - 0.021 14.8 0.3 0.33 11.0 0.1 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) RsgA_GTPase PF03193.16 gi|48477539|ref|YP_023245.1| - 0.023 14.6 0.7 0.051 13.5 0.1 1.7 2 0 0 2 2 2 0 RsgA GTPase Zn_Tnp_IS1595 PF12760.7 gi|48477539|ref|YP_023245.1| - 0.027 14.5 0.0 0.26 11.3 0.0 2.1 2 0 0 2 2 2 0 Transposase zinc-ribbon domain CBP_BcsQ PF06564.12 gi|48477539|ref|YP_023245.1| - 0.034 13.6 0.3 0.094 12.2 0.3 1.8 1 1 0 1 1 1 0 Cellulose biosynthesis protein BcsQ KTI12 PF08433.10 gi|48477539|ref|YP_023245.1| - 0.038 13.4 0.0 0.055 12.9 0.0 1.2 1 0 0 1 1 1 0 Chromatin associated protein KTI12 NACHT PF05729.12 gi|48477539|ref|YP_023245.1| - 0.045 13.7 0.3 0.085 12.8 0.3 1.4 1 0 0 1 1 1 0 NACHT domain Zeta_toxin PF06414.12 gi|48477539|ref|YP_023245.1| - 0.052 12.8 0.0 0.082 12.2 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin AAA_5 PF07728.14 gi|48477539|ref|YP_023245.1| - 0.076 13.0 0.0 0.12 12.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_33 PF13671.6 gi|48477539|ref|YP_023245.1| - 0.088 13.0 0.0 0.11 12.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|48477539|ref|YP_023245.1| - 0.1 11.8 0.2 0.19 10.9 0.2 1.4 1 0 0 1 1 1 0 NB-ARC domain AAA_29 PF13555.6 gi|48477539|ref|YP_023245.1| - 0.1 12.4 0.7 0.45 10.3 0.1 2.1 2 0 0 2 2 2 0 P-loop containing region of AAA domain CLP1_P PF16575.5 gi|48477539|ref|YP_023245.1| - 0.1 12.4 0.1 0.19 11.5 0.1 1.4 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop NTPase_1 PF03266.15 gi|48477539|ref|YP_023245.1| - 0.11 12.4 0.1 0.24 11.3 0.1 1.5 1 0 0 1 1 1 0 NTPase RC-P840_PscD PF10657.9 gi|48477539|ref|YP_023245.1| - 0.11 12.6 0.0 0.18 11.9 0.0 1.3 1 0 0 1 1 1 0 Photosystem P840 reaction centre protein PscD RNA_helicase PF00910.22 gi|48477539|ref|YP_023245.1| - 0.11 12.9 0.0 0.22 11.9 0.0 1.5 1 0 0 1 1 1 0 RNA helicase AAA_18 PF13238.6 gi|48477539|ref|YP_023245.1| - 0.15 12.6 0.0 0.31 11.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 gi|48477539|ref|YP_023245.1| - 0.17 11.6 0.0 0.31 10.8 0.0 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein AIRS_C PF02769.22 gi|48477540|ref|YP_023246.1| - 2.1e-18 66.9 0.0 3.3e-18 66.3 0.0 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|48477540|ref|YP_023246.1| - 4.4e-11 43.3 0.8 7.7e-11 42.5 0.8 1.4 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain YycI PF09648.10 gi|48477540|ref|YP_023246.1| - 0.011 15.4 0.3 0.033 13.8 0.0 1.7 1 1 0 2 2 2 0 YycH protein Biotin_lipoyl_2 PF13533.6 gi|48477540|ref|YP_023246.1| - 0.021 14.7 0.0 0.044 13.6 0.0 1.5 1 0 0 1 1 1 0 Biotin-lipoyl like DNA_pol_E_B PF04042.16 gi|48477541|ref|YP_023247.1| - 1.1e-14 54.3 0.1 3e-14 52.9 0.0 1.7 2 0 0 2 2 2 1 DNA polymerase alpha/epsilon subunit B Metallophos PF00149.28 gi|48477541|ref|YP_023247.1| - 6.4e-12 46.4 0.9 1.1e-11 45.6 0.9 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|48477541|ref|YP_023247.1| - 1.2e-07 32.1 0.0 3.8e-07 30.4 0.0 1.8 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain tRNA_anti-codon PF01336.25 gi|48477541|ref|YP_023247.1| - 0.12 12.4 0.7 0.27 11.2 0.2 1.8 2 0 0 2 2 2 0 OB-fold nucleic acid binding domain IMPDH PF00478.25 gi|48477542|ref|YP_023248.1| - 9.3e-151 501.7 5.6 1.1e-150 501.5 5.6 1.0 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain CBS PF00571.28 gi|48477542|ref|YP_023248.1| - 5.4e-21 74.8 5.2 1.1e-10 41.8 0.2 2.8 2 0 0 2 2 2 2 CBS domain NMO PF03060.15 gi|48477542|ref|YP_023248.1| - 5.7e-14 52.2 4.0 4.1e-08 33.0 3.0 2.7 3 0 0 3 3 3 2 Nitronate monooxygenase FMN_dh PF01070.18 gi|48477542|ref|YP_023248.1| - 3.2e-12 46.1 4.5 1.3e-11 44.1 3.2 2.3 3 0 0 3 3 3 1 FMN-dependent dehydrogenase DHO_dh PF01180.21 gi|48477542|ref|YP_023248.1| - 9.8e-06 25.0 5.9 0.00014 21.2 0.8 2.4 1 1 1 2 2 2 2 Dihydroorotate dehydrogenase His_biosynth PF00977.21 gi|48477542|ref|YP_023248.1| - 1.1e-05 25.1 6.5 0.00015 21.3 0.1 2.6 2 1 0 3 3 3 2 Histidine biosynthesis protein Glu_synthase PF01645.17 gi|48477542|ref|YP_023248.1| - 9e-05 21.8 4.3 0.00016 20.9 4.3 1.4 1 0 0 1 1 1 1 Conserved region in glutamate synthase Dus PF01207.17 gi|48477542|ref|YP_023248.1| - 0.00061 19.0 2.3 0.012 14.7 0.0 2.4 2 0 0 2 2 2 1 Dihydrouridine synthase (Dus) ThiG PF05690.14 gi|48477542|ref|YP_023248.1| - 0.001 18.5 2.1 0.001 18.5 2.1 2.4 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG DUF561 PF04481.12 gi|48477542|ref|YP_023248.1| - 0.0012 18.0 4.5 0.13 11.5 0.3 2.7 2 1 0 2 2 2 2 Protein of unknown function (DUF561) G3P_antiterm PF04309.12 gi|48477542|ref|YP_023248.1| - 0.0047 16.4 3.1 0.11 11.9 0.1 3.0 3 0 0 3 3 3 1 Glycerol-3-phosphate responsive antiterminator GcpE PF04551.14 gi|48477542|ref|YP_023248.1| - 0.016 14.3 0.2 0.036 13.1 0.2 1.5 1 0 0 1 1 1 0 GcpE protein EAL PF00563.20 gi|48477542|ref|YP_023248.1| - 0.021 14.3 0.2 0.14 11.7 0.1 2.1 2 0 0 2 2 2 0 EAL domain Mrr_N PF14338.6 gi|48477543|ref|YP_023249.1| - 0.017 15.2 0.0 0.02 15.0 0.0 1.0 1 0 0 1 1 1 0 Mrr N-terminal domain ABC_tran PF00005.27 gi|48477544|ref|YP_023250.1| - 9.7e-26 90.9 0.0 1.8e-25 90.1 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|48477544|ref|YP_023250.1| - 1.5e-07 31.5 1.8 0.00034 20.5 0.1 2.4 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|48477544|ref|YP_023250.1| - 0.066 12.6 0.7 1.2 8.6 0.7 2.3 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain SRP54 PF00448.22 gi|48477544|ref|YP_023250.1| - 0.073 12.7 0.2 1.3 8.6 0.0 2.2 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain KNTase_C PF07827.11 gi|48477544|ref|YP_023250.1| - 0.085 12.7 0.0 0.15 11.9 0.0 1.4 1 0 0 1 1 1 0 KNTase C-terminal domain AAA_29 PF13555.6 gi|48477544|ref|YP_023250.1| - 0.11 12.3 0.1 0.25 11.1 0.1 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_30 PF13604.6 gi|48477544|ref|YP_023250.1| - 0.12 12.1 0.0 0.2 11.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|48477544|ref|YP_023250.1| - 0.14 12.6 0.7 0.14 12.6 0.7 2.1 2 1 0 2 2 2 0 AAA domain AAA_22 PF13401.6 gi|48477544|ref|YP_023250.1| - 0.15 12.4 0.0 0.29 11.4 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_27 PF13514.6 gi|48477544|ref|YP_023250.1| - 0.19 11.3 0.1 0.32 10.5 0.1 1.2 1 0 0 1 1 1 0 AAA domain ABC2_membrane_2 PF12679.7 gi|48477545|ref|YP_023251.1| - 3.7e-07 29.7 33.2 8e-07 28.6 33.2 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|48477545|ref|YP_023251.1| - 0.00011 21.7 25.6 0.00011 21.7 25.6 2.1 1 1 1 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|48477545|ref|YP_023251.1| - 0.025 13.7 48.7 0.0039 16.3 44.2 1.8 1 1 1 2 2 2 0 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|48477545|ref|YP_023251.1| - 0.39 10.2 49.2 0.44 10.1 41.9 2.9 1 1 1 2 2 2 0 ABC-2 family transporter protein TOM13 PF08219.11 gi|48477546|ref|YP_023252.1| - 0.3 11.1 1.8 0.42 10.6 0.1 2.1 2 0 0 2 2 2 0 Outer membrane protein TOM13 DAO PF01266.24 gi|48477547|ref|YP_023253.1| - 3.5e-37 128.8 0.0 4e-37 128.6 0.0 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase Thi4 PF01946.17 gi|48477547|ref|YP_023253.1| - 0.00016 21.0 0.0 0.0003 20.1 0.0 1.5 1 0 0 1 1 1 1 Thi4 family NAD_binding_8 PF13450.6 gi|48477547|ref|YP_023253.1| - 0.00042 20.5 0.0 0.00081 19.6 0.0 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.24 gi|48477547|ref|YP_023253.1| - 0.0024 17.0 0.0 0.081 12.0 0.0 2.1 2 0 0 2 2 2 1 FAD binding domain Pyr_redox_2 PF07992.14 gi|48477547|ref|YP_023253.1| - 0.0074 15.6 0.0 0.58 9.3 0.0 2.1 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DUF1967 PF09269.11 gi|48477547|ref|YP_023253.1| - 0.04 13.9 0.1 0.21 11.6 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF1967) NAD_binding_9 PF13454.6 gi|48477547|ref|YP_023253.1| - 0.068 13.2 0.1 0.15 12.0 0.1 1.5 1 0 0 1 1 1 0 FAD-NAD(P)-binding GHMP_kinases_N PF00288.26 gi|48477548|ref|YP_023254.1| - 1.3e-12 47.7 2.2 2.5e-12 46.8 2.2 1.5 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|48477548|ref|YP_023254.1| - 4.1e-07 30.3 0.0 3.1e-06 27.4 0.0 2.1 2 0 0 2 2 2 1 GHMP kinases C terminal Cys_Met_Meta_PP PF01053.20 gi|48477549|ref|YP_023255.1| - 3.2e-106 355.1 0.0 3.9e-106 354.8 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.19 gi|48477549|ref|YP_023255.1| - 2e-06 27.0 0.0 2.8e-06 26.6 0.0 1.4 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.21 gi|48477549|ref|YP_023255.1| - 7.9e-06 25.3 0.0 1.1e-05 24.8 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class I and II Met_gamma_lyase PF06838.11 gi|48477549|ref|YP_023255.1| - 0.071 11.6 0.0 0.3 9.6 0.0 1.8 1 1 0 1 1 1 0 Methionine gamma-lyase GHMP_kinases_N PF00288.26 gi|48477550|ref|YP_023256.1| - 0.00073 19.7 0.6 0.0015 18.8 0.6 1.5 1 0 0 1 1 1 1 GHMP kinases N terminal domain AAA_18 PF13238.6 gi|48477551|ref|YP_023257.1| - 4.8e-09 36.9 0.0 7.3e-09 36.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.12 gi|48477551|ref|YP_023257.1| - 3.9e-06 26.3 0.0 5.8e-06 25.7 0.0 1.2 1 0 0 1 1 1 1 Zeta toxin AAA_17 PF13207.6 gi|48477551|ref|YP_023257.1| - 1e-05 26.0 0.0 9.3e-05 22.9 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.6 gi|48477551|ref|YP_023257.1| - 4.5e-05 23.6 0.0 8.8e-05 22.7 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|48477551|ref|YP_023257.1| - 0.03 14.5 0.0 0.044 14.0 0.0 1.2 1 0 0 1 1 1 0 AAA domain RuvB_N PF05496.12 gi|48477551|ref|YP_023257.1| - 0.067 12.9 0.0 0.29 10.9 0.0 1.9 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain AAA PF00004.29 gi|48477551|ref|YP_023257.1| - 0.14 12.5 0.0 0.26 11.7 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) NB-ARC PF00931.22 gi|48477551|ref|YP_023257.1| - 0.15 11.2 0.1 0.23 10.6 0.1 1.2 1 0 0 1 1 1 0 NB-ARC domain ArsA_ATPase PF02374.15 gi|48477551|ref|YP_023257.1| - 0.15 11.2 0.1 0.23 10.6 0.1 1.3 1 0 0 1 1 1 0 Anion-transporting ATPase Sod_Fe_C PF02777.18 gi|48477552|ref|YP_023258.1| - 3.9e-25 88.0 0.1 6.5e-25 87.3 0.1 1.3 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, C-terminal domain Sod_Fe_N PF00081.22 gi|48477552|ref|YP_023258.1| - 3.1e-09 37.2 0.3 7.4e-09 36.0 0.1 1.7 2 0 0 2 2 2 1 Iron/manganese superoxide dismutases, alpha-hairpin domain DUF4281 PF14108.6 gi|48477552|ref|YP_023258.1| - 0.02 15.2 0.0 0.044 14.2 0.0 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4281) HhH-GPD PF00730.25 gi|48477553|ref|YP_023259.1| - 0.15 12.5 0.0 0.25 11.8 0.0 1.4 1 0 0 1 1 1 0 HhH-GPD superfamily base excision DNA repair protein ThiI PF02568.14 gi|48477555|ref|YP_023261.1| - 1.3e-39 135.9 0.0 2.4e-39 135.0 0.0 1.4 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) THUMP PF02926.17 gi|48477555|ref|YP_023261.1| - 6.7e-23 81.4 0.9 1.1e-22 80.7 0.9 1.3 1 0 0 1 1 1 1 THUMP domain Rhodanese PF00581.20 gi|48477555|ref|YP_023261.1| - 3.3e-08 34.0 0.1 1.3e-07 32.1 0.1 2.0 2 0 0 2 2 2 1 Rhodanese-like domain QueC PF06508.13 gi|48477555|ref|YP_023261.1| - 0.0045 16.5 0.0 0.73 9.3 0.0 2.3 2 0 0 2 2 2 2 Queuosine biosynthesis protein QueC Diphthami_syn_2 PF01902.17 gi|48477555|ref|YP_023261.1| - 0.013 15.0 0.0 0.048 13.2 0.0 1.9 2 0 0 2 2 2 0 Diphthamide synthase FMN_red PF03358.15 gi|48477556|ref|YP_023262.1| - 1.1e-38 132.5 0.0 1.3e-38 132.2 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|48477556|ref|YP_023262.1| - 6e-07 29.4 0.0 7.2e-07 29.1 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin-like fold MR_MLE_C PF13378.6 gi|48477557|ref|YP_023263.1| - 2.1e-50 171.3 0.0 2.7e-50 171.0 0.0 1.1 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|48477557|ref|YP_023263.1| - 4e-09 36.7 0.0 7.8e-09 35.8 0.0 1.5 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CABIT PF12736.7 gi|48477557|ref|YP_023263.1| - 0.0019 17.5 0.0 0.0028 17.0 0.0 1.1 1 0 0 1 1 1 1 Cell-cycle sustaining, positive selection, V_ATPase_I PF01496.19 gi|48477558|ref|YP_023264.1| - 8.1e-26 90.2 12.6 1.7e-20 72.6 0.1 3.5 3 1 0 4 4 4 2 V-type ATPase 116kDa subunit family YejG PF13989.6 gi|48477558|ref|YP_023264.1| - 0.04 14.4 0.3 0.26 11.7 0.1 2.2 2 0 0 2 2 2 0 YejG-like protein Snapin_Pallidin PF14712.6 gi|48477558|ref|YP_023264.1| - 0.21 12.0 3.7 4 7.9 0.0 2.7 3 0 0 3 3 3 0 Snapin/Pallidin SRI PF08236.11 gi|48477558|ref|YP_023264.1| - 0.37 11.0 1.9 66 3.8 0.0 3.6 4 0 0 4 4 4 0 SRI (Set2 Rpb1 interacting) domain NKWYS PF10364.9 gi|48477559|ref|YP_023265.1| - 0.019 15.1 6.0 0.022 14.9 6.0 1.1 1 0 0 1 1 1 0 Putative capsular polysaccharide synthesis protein Tox-REase-2 PF15646.6 gi|48477559|ref|YP_023265.1| - 0.081 13.1 3.1 0.098 12.8 3.1 1.1 1 0 0 1 1 1 0 Restriction endonuclease fold toxin 2 OmpH PF03938.14 gi|48477559|ref|YP_023265.1| - 0.14 12.5 12.8 0.15 12.4 12.8 1.1 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) PKcGMP_CC PF16808.5 gi|48477559|ref|YP_023265.1| - 0.23 11.4 10.9 0.22 11.4 7.2 2.4 2 0 0 2 2 2 0 Coiled-coil N-terminus of cGMP-dependent protein kinase Intein_splicing PF14890.6 gi|48477559|ref|YP_023265.1| - 1.3 8.9 5.2 1.7 8.6 5.1 1.3 1 1 0 1 1 1 0 Intein splicing domain FtsA PF14450.6 gi|48477559|ref|YP_023265.1| - 4.3 7.8 5.2 11 6.4 5.2 1.7 1 1 0 1 1 1 0 Cell division protein FtsA Iron_permease PF04120.12 gi|48477559|ref|YP_023265.1| - 6.3 6.6 7.8 4.7 7.0 6.1 1.7 1 1 1 2 2 2 0 Low affinity iron permease ATP-synt_D PF01813.17 gi|48477560|ref|YP_023266.1| - 2.8e-51 174.1 10.5 3.2e-51 174.0 10.5 1.0 1 0 0 1 1 1 1 ATP synthase subunit D GAS PF13851.6 gi|48477560|ref|YP_023266.1| - 0.011 15.1 7.7 0.08 12.3 0.5 2.3 2 1 0 2 2 2 0 Growth-arrest specific micro-tubule binding DUF2408 PF10303.9 gi|48477560|ref|YP_023266.1| - 0.57 10.7 4.6 0.2 12.2 1.3 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2408) DUF5407 PF17401.2 gi|48477560|ref|YP_023266.1| - 1.7 8.9 6.3 0.33 11.2 0.4 2.7 2 1 1 3 3 3 0 Family of unknown function (DUF5407) DUF2570 PF10828.8 gi|48477560|ref|YP_023266.1| - 2 8.2 5.8 0.47 10.3 2.0 1.9 2 1 1 3 3 3 0 Protein of unknown function (DUF2570) ATP-synt_ab PF00006.25 gi|48477561|ref|YP_023267.1| - 1.8e-63 214.1 0.0 2.5e-63 213.6 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_N PF02874.23 gi|48477561|ref|YP_023267.1| - 2.6e-12 47.1 0.2 4.4e-12 46.3 0.2 1.4 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain HAS-barrel PF09378.10 gi|48477561|ref|YP_023267.1| - 0.054 13.6 0.3 0.16 12.2 0.3 1.8 1 0 0 1 1 1 0 HAS barrel domain ATP-synt_ab PF00006.25 gi|48477562|ref|YP_023268.1| - 1.3e-89 299.4 0.1 6.6e-82 274.3 0.0 2.3 2 0 0 2 2 2 2 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_Xtn PF16886.5 gi|48477562|ref|YP_023268.1| - 7.1e-40 135.6 0.4 1.7e-39 134.4 0.4 1.7 1 0 0 1 1 1 1 ATPsynthase alpha/beta subunit N-term extension Intein_splicing PF14890.6 gi|48477562|ref|YP_023268.1| - 3e-16 59.6 0.7 9.9e-16 57.9 0.7 1.9 1 0 0 1 1 1 1 Intein splicing domain ATP-synt_ab_N PF02874.23 gi|48477562|ref|YP_023268.1| - 2e-14 53.8 1.1 6.1e-14 52.3 0.7 2.2 2 0 0 2 2 2 1 ATP synthase alpha/beta family, beta-barrel domain RnfC_N PF13375.6 gi|48477562|ref|YP_023268.1| - 0.085 12.8 0.1 0.38 10.7 0.1 2.1 1 0 0 1 1 1 0 RnfC Barrel sandwich hybrid domain TSNAXIP1_N PF15739.5 gi|48477562|ref|YP_023268.1| - 3.4 8.1 9.8 8.6 6.8 0.4 3.2 2 1 1 3 3 3 0 Translin-associated factor X-interacting N-terminus ATP-synt_F PF01990.17 gi|48477563|ref|YP_023269.1| - 9.6e-07 29.0 0.0 1.2e-06 28.7 0.0 1.2 1 0 0 1 1 1 1 ATP synthase (F/14-kDa) subunit vATP-synt_AC39 PF01992.16 gi|48477564|ref|YP_023270.1| - 9.1e-44 150.3 16.3 1.1e-43 150.0 16.3 1.0 1 0 0 1 1 1 1 ATP synthase (C/AC39) subunit Mltc_N PF11873.8 gi|48477564|ref|YP_023270.1| - 0.018 14.7 0.1 0.042 13.6 0.1 1.7 1 0 0 1 1 1 0 Membrane-bound lytic murein transglycosylase C, N-terminal domain FtsK_alpha PF17854.1 gi|48477564|ref|YP_023270.1| - 0.019 15.1 0.0 0.045 13.9 0.0 1.6 1 0 0 1 1 1 0 FtsK alpha domain Chal_sti_synt_C PF02797.15 gi|48477564|ref|YP_023270.1| - 0.13 12.2 0.2 14 5.6 0.0 2.5 2 0 0 2 2 2 0 Chalcone and stilbene synthases, C-terminal domain vATP-synt_E PF01991.18 gi|48477565|ref|YP_023271.1| - 1.2e-05 24.8 15.8 0.0009 18.7 15.5 2.3 1 1 1 2 2 2 2 ATP synthase (E/31 kDa) subunit DUF4735 PF15882.5 gi|48477565|ref|YP_023271.1| - 0.019 14.4 3.8 0.023 14.2 3.8 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4735) Cor1 PF04803.12 gi|48477565|ref|YP_023271.1| - 0.029 14.6 6.1 0.029 14.6 6.1 2.0 2 1 0 2 2 2 0 Cor1/Xlr/Xmr conserved region Phage_Mu_Gam PF07352.12 gi|48477565|ref|YP_023271.1| - 0.058 13.3 15.0 0.074 13.0 6.4 2.1 1 1 1 2 2 2 0 Bacteriophage Mu Gam like protein Mitofilin PF09731.9 gi|48477565|ref|YP_023271.1| - 0.11 11.3 7.4 0.17 10.7 7.4 1.2 1 0 0 1 1 1 0 Mitochondrial inner membrane protein DUF1664 PF07889.12 gi|48477565|ref|YP_023271.1| - 1.4 9.0 6.7 1.3 9.1 5.3 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) Sds3 PF08598.11 gi|48477565|ref|YP_023271.1| - 3.8 7.4 13.6 6.4 6.7 13.6 1.5 1 1 0 1 1 1 0 Sds3-like Ku_C PF03730.14 gi|48477565|ref|YP_023271.1| - 5.5 7.8 10.5 3.5 8.4 7.5 2.1 1 1 2 3 3 3 0 Ku70/Ku80 C-terminal arm EMC3_TMCO1 PF01956.16 gi|48477565|ref|YP_023271.1| - 6.8 6.4 8.6 16 5.1 8.6 1.7 1 1 0 1 1 1 0 Integral membrane protein EMC3/TMCO1-like ATP-synt_C PF00137.21 gi|48477566|ref|YP_023272.1| - 2.1e-09 37.6 12.4 2.6e-09 37.3 12.4 1.1 1 0 0 1 1 1 1 ATP synthase subunit C PHO4 PF01384.20 gi|48477566|ref|YP_023272.1| - 0.31 10.1 5.4 0.32 10.0 5.4 1.0 1 0 0 1 1 1 0 Phosphate transporter family zf-ZPR1 PF03367.13 gi|48477567|ref|YP_023273.1| - 2.8e-32 111.8 0.0 3.3e-32 111.5 0.0 1.1 1 0 0 1 1 1 1 ZPR1 zinc-finger domain DZR PF12773.7 gi|48477567|ref|YP_023273.1| - 0.032 14.3 0.1 0.05 13.6 0.1 1.3 1 0 0 1 1 1 0 Double zinc ribbon Zn_Tnp_IS1595 PF12760.7 gi|48477567|ref|YP_023273.1| - 0.036 14.1 0.2 0.064 13.2 0.2 1.4 1 0 0 1 1 1 0 Transposase zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|48477567|ref|YP_023273.1| - 0.046 13.4 2.7 6.5 6.6 0.0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain GFA PF04828.14 gi|48477567|ref|YP_023273.1| - 0.069 13.5 1.3 13 6.2 0.3 2.3 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme DUF3268 PF11672.8 gi|48477567|ref|YP_023273.1| - 0.13 12.6 0.6 0.18 12.2 0.6 1.3 1 0 0 1 1 1 0 zinc-finger-containing domain zf-ribbon_3 PF13248.6 gi|48477567|ref|YP_023273.1| - 0.14 11.6 4.1 1.3 8.6 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|48477567|ref|YP_023273.1| - 0.22 11.1 1.6 15 5.2 0.2 2.4 2 0 0 2 2 2 0 TFIIB zinc-binding Zn-ribbon_8 PF09723.10 gi|48477567|ref|YP_023273.1| - 0.23 11.6 1.0 9.4 6.5 0.0 2.3 2 0 0 2 2 2 0 Zinc ribbon domain zf-RRN7 PF11781.8 gi|48477567|ref|YP_023273.1| - 0.36 10.6 3.9 4.1 7.2 0.1 2.2 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Prim_Zn_Ribbon PF08273.12 gi|48477567|ref|YP_023273.1| - 3.9 7.8 5.8 60 4.0 5.8 2.2 1 1 0 1 1 1 0 Zinc-binding domain of primase-helicase FMN_dh PF01070.18 gi|48477568|ref|YP_023274.1| - 4.3e-19 68.7 0.1 7.6e-10 38.3 0.1 2.5 2 1 0 2 2 2 2 FMN-dependent dehydrogenase IMPDH PF00478.25 gi|48477568|ref|YP_023274.1| - 1.9e-05 23.9 2.4 2.1 7.3 0.0 4.0 4 0 0 4 4 4 3 IMP dehydrogenase / GMP reductase domain DHO_dh PF01180.21 gi|48477568|ref|YP_023274.1| - 0.018 14.3 1.3 0.062 12.5 0.0 2.3 3 0 0 3 3 3 0 Dihydroorotate dehydrogenase Glu_synthase PF01645.17 gi|48477568|ref|YP_023274.1| - 0.51 9.4 4.6 2.1 7.4 2.0 2.6 2 1 0 2 2 2 0 Conserved region in glutamate synthase AA_kinase PF00696.28 gi|48477569|ref|YP_023275.1| - 3.1e-33 115.4 0.0 3.6e-33 115.2 0.0 1.0 1 0 0 1 1 1 1 Amino acid kinase family DUF2371 PF10177.9 gi|48477570|ref|YP_023276.1| - 0.0058 16.8 1.5 0.062 13.5 0.1 2.2 2 0 0 2 2 2 1 Uncharacterised conserved protein (DUF2371) DUF3784 PF12650.7 gi|48477570|ref|YP_023276.1| - 0.026 14.7 4.3 0.52 10.5 0.1 2.4 2 1 0 2 2 2 0 Domain of unknown function (DUF3784) OppC_N PF12911.7 gi|48477570|ref|YP_023276.1| - 0.049 13.6 2.4 0.23 11.5 0.2 2.4 2 0 0 2 2 2 0 N-terminal TM domain of oligopeptide transport permease C CD20 PF04103.15 gi|48477570|ref|YP_023276.1| - 0.05 13.7 4.0 0.6 10.2 0.3 2.2 2 0 0 2 2 2 0 CD20-like family DUF373 PF04123.13 gi|48477570|ref|YP_023276.1| - 0.069 12.6 2.9 0.12 11.8 0.1 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF373) Neurensin PF14927.6 gi|48477570|ref|YP_023276.1| - 0.075 12.7 0.7 0.89 9.3 0.1 2.1 2 0 0 2 2 2 0 Neurensin Saf_2TM PF18303.1 gi|48477570|ref|YP_023276.1| - 0.1 12.2 1.7 1.6 8.3 0.2 2.2 2 0 0 2 2 2 0 SAVED-fused 2TM effector domain YbjN PF10722.9 gi|48477570|ref|YP_023276.1| - 0.11 12.6 0.0 0.16 12.0 0.0 1.2 1 0 0 1 1 1 0 Putative bacterial sensory transduction regulator DUF454 PF04304.13 gi|48477570|ref|YP_023276.1| - 0.11 12.5 1.8 2.9 7.9 0.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF454) YtpI PF14007.6 gi|48477570|ref|YP_023276.1| - 0.11 12.7 2.7 0.49 10.6 0.2 2.3 2 0 0 2 2 2 0 YtpI-like protein DoxD PF04173.13 gi|48477571|ref|YP_023277.1| - 1.1e-49 168.6 3.1 1.2e-49 168.4 3.1 1.0 1 0 0 1 1 1 1 TQO small subunit DoxD DoxX PF07681.12 gi|48477571|ref|YP_023277.1| - 3.5e-06 27.5 9.9 3.5e-06 27.5 9.9 2.1 2 1 0 2 2 2 1 DoxX DoxX_2 PF13564.6 gi|48477571|ref|YP_023277.1| - 0.059 13.5 7.9 0.085 13.0 6.9 1.9 1 1 1 2 2 2 0 DoxX-like family DoxA PF07680.11 gi|48477572|ref|YP_023278.1| - 5.1e-30 104.1 0.2 7e-30 103.6 0.2 1.2 1 0 0 1 1 1 1 TQO small subunit DoxA OppC_N PF12911.7 gi|48477572|ref|YP_023278.1| - 0.12 12.4 0.1 0.23 11.4 0.1 1.5 1 0 0 1 1 1 0 N-terminal TM domain of oligopeptide transport permease C AMP-binding_C PF13193.6 gi|48477573|ref|YP_023279.1| - 2.1e-18 67.1 0.0 5.4e-18 65.7 0.0 1.7 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.28 gi|48477573|ref|YP_023279.1| - 1.4e-13 50.2 0.0 1.7e-13 50.0 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding PF00501.28 gi|48477574|ref|YP_023280.1| - 5.7e-49 166.9 0.0 6.5e-49 166.7 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme ACAS_N PF16177.5 gi|48477574|ref|YP_023280.1| - 4.5e-13 48.9 4.6 9.6e-13 47.8 4.6 1.6 1 0 0 1 1 1 1 Acetyl-coenzyme A synthetase N-terminus GCV_T PF01571.21 gi|48477575|ref|YP_023281.1| - 1.1e-81 274.1 0.0 1.3e-81 273.8 0.0 1.0 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain GCV_T_C PF08669.11 gi|48477575|ref|YP_023281.1| - 1.7e-14 53.5 0.0 2.9e-14 52.7 0.0 1.4 1 0 0 1 1 1 1 Glycine cleavage T-protein C-terminal barrel domain SNO PF01174.19 gi|48477576|ref|YP_023282.1| - 1.9e-51 174.6 0.0 2.1e-51 174.5 0.0 1.0 1 0 0 1 1 1 1 SNO glutamine amidotransferase family GATase_3 PF07685.14 gi|48477576|ref|YP_023282.1| - 3.4e-12 46.4 0.1 4.6e-12 45.9 0.1 1.1 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain Peptidase_S51 PF03575.17 gi|48477576|ref|YP_023282.1| - 9e-06 25.5 0.0 1.2e-05 25.1 0.0 1.2 1 0 0 1 1 1 1 Peptidase family S51 GATase PF00117.28 gi|48477576|ref|YP_023282.1| - 1.1e-05 25.2 0.2 4.1e-05 23.4 0.2 1.7 1 1 0 1 1 1 1 Glutamine amidotransferase class-I DJ-1_PfpI PF01965.24 gi|48477576|ref|YP_023282.1| - 0.00089 19.1 0.0 0.0012 18.7 0.0 1.2 1 0 0 1 1 1 1 DJ-1/PfpI family BPL_N PF09825.9 gi|48477576|ref|YP_023282.1| - 0.007 15.5 0.0 0.024 13.7 0.0 1.7 2 0 0 2 2 2 1 Biotin-protein ligase, N terminal TruD PF01142.18 gi|48477577|ref|YP_023283.1| - 5.7e-123 410.8 0.0 6.5e-123 410.6 0.0 1.0 1 0 0 1 1 1 1 tRNA pseudouridine synthase D (TruD) TBP PF00352.21 gi|48477578|ref|YP_023284.1| - 2.7e-59 197.1 0.1 1.9e-28 98.2 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.8 gi|48477578|ref|YP_023284.1| - 1.5e-06 28.2 0.0 0.027 14.6 0.0 2.6 2 1 0 2 2 2 2 Domain of unknown function (DUF3378) DUF2120 PF09893.9 gi|48477578|ref|YP_023284.1| - 0.066 13.3 0.8 0.33 11.1 0.8 2.0 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2120) Fusion_F0 PF13044.6 gi|48477578|ref|YP_023284.1| - 0.08 11.6 0.0 0.088 11.4 0.0 1.1 1 0 0 1 1 1 0 Fusion glycoprotein F0, Isavirus FeS_assembly_P PF01883.19 gi|48477579|ref|YP_023285.1| - 4e-23 81.4 0.1 5e-23 81.1 0.1 1.1 1 0 0 1 1 1 1 Iron-sulfur cluster assembly protein NTPase_I-T PF01931.18 gi|48477580|ref|YP_023286.1| - 2.2e-30 105.6 0.0 3.1e-30 105.1 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF84 CTP_transf_like PF01467.26 gi|48477580|ref|YP_023286.1| - 8.6e-15 55.2 0.0 1.5e-14 54.4 0.0 1.4 1 0 0 1 1 1 1 Cytidylyltransferase-like Aminotran_1_2 PF00155.21 gi|48477581|ref|YP_023287.1| - 2.5e-40 138.8 0.0 3e-40 138.5 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_MocR PF12897.7 gi|48477581|ref|YP_023287.1| - 0.0004 19.3 0.0 0.0012 17.8 0.0 1.6 1 1 0 1 1 1 1 Alanine-glyoxylate amino-transferase Beta_elim_lyase PF01212.21 gi|48477581|ref|YP_023287.1| - 0.0066 15.8 0.0 0.0098 15.2 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.17 gi|48477581|ref|YP_023287.1| - 0.096 12.0 0.0 0.16 11.2 0.0 1.3 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family SKIP_SNW PF02731.15 gi|48477581|ref|YP_023287.1| - 0.12 12.1 0.0 0.22 11.2 0.0 1.4 1 0 0 1 1 1 0 SKIP/SNW domain Aminotran_3 PF00202.21 gi|48477581|ref|YP_023287.1| - 0.13 10.9 0.0 0.19 10.3 0.0 1.3 1 0 0 1 1 1 0 Aminotransferase class-III ETF PF01012.21 gi|48477582|ref|YP_023288.1| - 1e-49 168.9 0.0 2.8e-31 108.8 0.0 2.3 2 0 0 2 2 2 2 Electron transfer flavoprotein domain ETF_alpha PF00766.19 gi|48477582|ref|YP_023288.1| - 2.4e-21 75.5 0.1 6.6e-21 74.1 0.1 1.7 1 0 0 1 1 1 1 Electron transfer flavoprotein FAD-binding domain PlyB_C PF18684.1 gi|48477582|ref|YP_023288.1| - 0.16 11.6 0.0 0.48 10.1 0.0 1.7 2 0 0 2 2 2 0 Pleurotolysin B C-terminal domain ISP3_C PF18045.1 gi|48477582|ref|YP_023288.1| - 1.4 8.8 3.4 9.9 6.1 0.1 3.1 4 0 0 4 4 4 0 ISP3 C-terminal Rieske PF00355.26 gi|48477583|ref|YP_023289.1| - 2.8e-14 52.8 0.0 3.2e-14 52.6 0.0 1.1 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Rieske_2 PF13806.6 gi|48477583|ref|YP_023289.1| - 2.5e-08 33.8 0.0 3e-08 33.5 0.0 1.0 1 0 0 1 1 1 1 Rieske-like [2Fe-2S] domain tRNA-synt_His PF13393.6 gi|48477584|ref|YP_023290.1| - 2e-49 168.5 0.0 2.7e-49 168.1 0.0 1.1 1 0 0 1 1 1 1 Histidyl-tRNA synthetase HGTP_anticodon PF03129.20 gi|48477584|ref|YP_023290.1| - 1.6e-09 37.8 0.1 3.2e-09 36.8 0.1 1.6 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|48477584|ref|YP_023290.1| - 5.7e-09 36.2 0.0 8.8e-09 35.6 0.0 1.4 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) tRNA-synt_2d PF01409.20 gi|48477584|ref|YP_023290.1| - 0.019 14.4 0.0 0.039 13.4 0.0 1.6 1 0 0 1 1 1 0 tRNA synthetases class II core domain (F) MS_channel PF00924.18 gi|48477585|ref|YP_023291.1| - 1.3e-22 80.4 1.3 1.3e-22 80.4 1.3 2.0 2 0 0 2 2 2 1 Mechanosensitive ion channel 7TM_GPCR_Srbc PF10316.9 gi|48477585|ref|YP_023291.1| - 0.0004 20.0 7.5 0.0007 19.2 7.5 1.3 1 0 0 1 1 1 1 Serpentine type 7TM GPCR chemoreceptor Srbc EcsB PF05975.12 gi|48477585|ref|YP_023291.1| - 0.028 13.3 9.7 0.037 12.9 9.7 1.1 1 0 0 1 1 1 0 Bacterial ABC transporter protein EcsB DUF3792 PF12670.7 gi|48477585|ref|YP_023291.1| - 0.12 12.6 18.1 0.24 11.6 18.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3792) AsnC_trans_reg PF01037.21 gi|48477586|ref|YP_023292.1| - 1.7e-06 27.9 0.0 3.2e-06 27.0 0.0 1.4 1 1 0 1 1 1 1 Lrp/AsnC ligand binding domain DctQ PF04290.12 gi|48477587|ref|YP_023293.1| - 0.75 9.7 15.4 1.6 8.7 15.4 1.5 1 1 0 1 1 1 0 Tripartite ATP-independent periplasmic transporters, DctQ component LptF_LptG PF03739.14 gi|48477587|ref|YP_023293.1| - 1.3 7.8 19.2 1.5 7.5 19.2 1.1 1 0 0 1 1 1 0 Lipopolysaccharide export system permease LptF/LptG TssN PF17555.2 gi|48477587|ref|YP_023293.1| - 3.8 6.8 15.8 4.4 6.6 15.8 1.1 1 0 0 1 1 1 0 Type VI secretion system, TssN DUF4064 PF13273.6 gi|48477587|ref|YP_023293.1| - 6.8 7.0 27.3 0.9 9.8 12.3 2.3 1 1 0 2 2 2 0 Protein of unknown function (DUF4064) GMP_synt_C PF00958.22 gi|48477588|ref|YP_023294.1| - 2.7e-35 120.3 0.0 4.9e-35 119.4 0.0 1.5 1 0 0 1 1 1 1 GMP synthase C terminal domain NAD_synthase PF02540.17 gi|48477588|ref|YP_023294.1| - 7.4e-06 25.3 0.0 0.011 14.8 0.0 2.1 2 0 0 2 2 2 2 NAD synthase QueC PF06508.13 gi|48477588|ref|YP_023294.1| - 1e-05 25.2 0.0 0.00023 20.7 0.0 2.0 1 1 0 1 1 1 1 Queuosine biosynthesis protein QueC ATP_bind_3 PF01171.20 gi|48477588|ref|YP_023294.1| - 0.0059 16.4 0.0 0.0092 15.7 0.0 1.3 1 0 0 1 1 1 1 PP-loop family PAPS_reduct PF01507.19 gi|48477588|ref|YP_023294.1| - 0.0098 15.9 0.0 0.014 15.5 0.0 1.3 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family Ribosomal_S2 PF00318.20 gi|48477589|ref|YP_023295.1| - 5.3e-27 94.4 0.5 1.5e-14 53.8 0.4 2.0 1 1 1 2 2 2 2 Ribosomal protein S2 tRNA_int_endo PF01974.17 gi|48477590|ref|YP_023296.1| - 1e-17 63.9 0.3 4.2e-17 62.0 0.2 2.0 2 0 0 2 2 2 1 tRNA intron endonuclease, catalytic C-terminal domain SH3_17 PF18350.1 gi|48477591|ref|YP_023297.1| - 0.0077 16.1 0.0 0.016 15.1 0.0 1.6 1 0 0 1 1 1 1 Restriction endonuclease SH3 domain PIN_6 PF17146.4 gi|48477592|ref|YP_023298.1| - 1e-17 64.4 0.1 1.6e-17 63.8 0.1 1.3 1 0 0 1 1 1 1 PIN domain of ribonuclease PIN_5 PF08745.11 gi|48477592|ref|YP_023298.1| - 1.2e-05 24.9 0.2 0.00016 21.2 0.1 2.1 2 0 0 2 2 2 1 PINc domain ribonuclease HypA PF01155.19 gi|48477592|ref|YP_023298.1| - 0.0047 16.9 0.0 0.0072 16.3 0.0 1.3 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA NOB1_Zn_bind PF08772.11 gi|48477592|ref|YP_023298.1| - 0.018 15.2 2.5 0.036 14.2 2.5 1.5 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like Nudix_N_2 PF14803.6 gi|48477592|ref|YP_023298.1| - 0.04 13.9 2.2 3.6 7.6 0.1 2.5 2 0 0 2 2 2 0 Nudix N-terminal DZR PF12773.7 gi|48477592|ref|YP_023298.1| - 0.061 13.3 0.1 0.091 12.8 0.1 1.2 1 0 0 1 1 1 0 Double zinc ribbon DNA_ligase_ZBD PF03119.16 gi|48477592|ref|YP_023298.1| - 0.19 11.7 0.3 0.19 11.7 0.3 2.2 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain DUF2072 PF09845.9 gi|48477592|ref|YP_023298.1| - 0.22 11.8 2.2 0.36 11.1 2.2 1.4 1 0 0 1 1 1 0 Zn-ribbon containing protein Zn_ribbon_SprT PF17283.2 gi|48477592|ref|YP_023298.1| - 0.26 11.2 7.5 0.23 11.4 2.1 2.3 2 0 0 2 2 2 0 SprT-like zinc ribbon domain Zn-ribbon_8 PF09723.10 gi|48477592|ref|YP_023298.1| - 0.55 10.4 5.7 1.6 8.9 5.7 1.7 1 1 0 1 1 1 0 Zinc ribbon domain ThiF PF00899.21 gi|48477593|ref|YP_023299.1| - 1.4e-63 214.6 0.2 1.6e-63 214.3 0.2 1.0 1 0 0 1 1 1 1 ThiF family Sacchrp_dh_NADP PF03435.18 gi|48477593|ref|YP_023299.1| - 0.001 19.3 0.1 0.0026 18.0 0.1 1.7 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain NAD_binding_7 PF13241.6 gi|48477593|ref|YP_023299.1| - 0.0025 18.2 0.0 0.0044 17.4 0.0 1.3 1 0 0 1 1 1 1 Putative NAD(P)-binding Shikimate_DH PF01488.20 gi|48477593|ref|YP_023299.1| - 0.016 15.3 1.0 0.17 11.9 1.0 2.3 1 1 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase UDPG_MGDP_dh_N PF03721.14 gi|48477593|ref|YP_023299.1| - 0.085 12.4 0.0 0.18 11.4 0.0 1.6 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Glu_dehyd_C PF16912.5 gi|48477593|ref|YP_023299.1| - 0.14 11.6 0.1 0.46 9.9 0.0 1.7 1 1 0 2 2 2 0 Glucose dehydrogenase C-terminus TauE PF01925.19 gi|48477594|ref|YP_023300.1| - 3.8e-33 115.1 31.1 5e-33 114.7 31.1 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE NVEALA PF14055.6 gi|48477594|ref|YP_023300.1| - 0.0065 16.4 0.3 0.16 12.0 0.0 3.0 3 0 0 3 3 3 1 NVEALA protein Podoplanin PF05808.11 gi|48477594|ref|YP_023300.1| - 0.23 11.6 10.3 0.29 11.2 0.0 2.4 2 0 0 2 2 2 0 Podoplanin Gly-zipper_YMGG PF13441.6 gi|48477594|ref|YP_023300.1| - 2.8 7.8 10.8 2 8.2 0.8 2.8 2 0 0 2 2 2 0 YMGG-like Gly-zipper GFO_IDH_MocA PF01408.22 gi|48477595|ref|YP_023301.1| - 3.9e-18 66.4 0.2 6.4e-18 65.7 0.2 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 gi|48477595|ref|YP_023301.1| - 1.3e-06 28.4 0.1 2.2e-06 27.6 0.1 1.4 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain NAD_binding_3 PF03447.16 gi|48477595|ref|YP_023301.1| - 0.014 16.0 0.4 0.022 15.4 0.4 1.3 1 0 0 1 1 1 0 Homoserine dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|48477595|ref|YP_023301.1| - 0.14 12.7 0.1 0.28 11.8 0.1 1.4 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent MFS_1 PF07690.16 gi|48477596|ref|YP_023302.1| - 0.15 11.0 58.2 29 3.4 58.2 3.1 1 1 0 1 1 1 0 Major Facilitator Superfamily RNase_J_C PF17770.1 gi|48477597|ref|YP_023303.1| - 0.00069 20.6 2.4 0.0031 18.5 0.5 2.1 2 0 0 2 2 2 1 Ribonuclease J C-terminal domain CTD_bind PF04818.13 gi|48477597|ref|YP_023303.1| - 0.00096 19.9 0.2 0.22 12.4 0.1 2.3 2 0 0 2 2 2 1 RNA polymerase II-binding domain. DUF3387 PF11867.8 gi|48477597|ref|YP_023303.1| - 0.0015 18.0 5.7 0.0015 18.0 5.7 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF3387) DUF4007 PF13182.6 gi|48477597|ref|YP_023303.1| - 0.0091 15.2 1.3 0.01 14.9 1.3 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF4007) MIF4G PF02854.19 gi|48477597|ref|YP_023303.1| - 0.019 14.6 2.0 0.021 14.5 2.0 1.2 1 0 0 1 1 1 0 MIF4G domain DUF1548 PF07579.11 gi|48477597|ref|YP_023303.1| - 0.022 15.1 0.8 0.11 12.8 0.4 1.9 1 1 1 2 2 2 0 Domain of Unknown Function (DUF1548) EnY2 PF10163.9 gi|48477597|ref|YP_023303.1| - 0.026 14.9 1.8 0.28 11.6 1.8 2.3 1 1 0 1 1 1 0 Transcription factor e(y)2 Xpo1 PF08389.12 gi|48477597|ref|YP_023303.1| - 0.027 14.5 0.6 0.065 13.3 0.6 1.7 1 1 0 1 1 1 0 Exportin 1-like protein DUF3458_C PF17432.2 gi|48477597|ref|YP_023303.1| - 0.03 13.7 0.1 0.045 13.1 0.1 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF3458_C) ARM repeats DUF45 PF01863.17 gi|48477597|ref|YP_023303.1| - 0.065 13.3 1.7 2.9 7.9 0.0 2.4 1 1 1 2 2 2 0 Protein of unknown function DUF45 T4_Rnl2_C PF18043.1 gi|48477597|ref|YP_023303.1| - 0.07 13.3 3.6 2.9 8.1 0.7 2.3 2 0 0 2 2 2 0 T4 RNA ligase 2 C-terminal DnaI_N PF07319.11 gi|48477597|ref|YP_023303.1| - 0.074 13.7 3.3 0.13 13.0 1.1 2.0 2 0 0 2 2 2 0 Primosomal protein DnaI N-terminus RICH PF05062.12 gi|48477597|ref|YP_023303.1| - 0.11 12.8 9.4 0.051 13.9 3.3 2.6 1 1 1 2 2 2 0 RICH domain DUF3144 PF11342.8 gi|48477597|ref|YP_023303.1| - 0.17 12.2 1.2 27 5.2 0.0 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF3144) PdaC PF13739.6 gi|48477597|ref|YP_023303.1| - 0.41 11.7 8.7 1 10.4 2.3 2.5 1 1 1 2 2 2 0 Deacetylase PdaC DNTTIP1_dimer PF18192.1 gi|48477597|ref|YP_023303.1| - 0.63 10.4 6.8 4.2 7.8 1.0 3.8 3 1 0 3 3 3 0 DNTTIP1 dimerisation domain MinE PF03776.14 gi|48477597|ref|YP_023303.1| - 5.5 7.1 8.3 1.8 8.6 0.6 2.9 2 1 1 3 3 3 0 Septum formation topological specificity factor MinE DEAD PF00270.29 gi|48477598|ref|YP_023304.1| - 0.021 14.6 0.0 0.088 12.6 0.0 1.8 1 1 1 2 2 2 0 DEAD/DEAH box helicase IF-2B PF01008.17 gi|48477599|ref|YP_023305.1| - 7.1e-29 100.9 0.0 1.8e-28 99.6 0.0 1.5 1 1 0 1 1 1 1 Initiation factor 2 subunit family Ribosomal_S18 PF01084.20 gi|48477599|ref|YP_023305.1| - 0.017 15.4 0.3 1.1 9.6 0.1 2.6 2 0 0 2 2 2 0 Ribosomal protein S18 Fer4 PF00037.27 gi|48477600|ref|YP_023306.1| - 4.8e-11 42.0 15.4 1.1e-06 28.2 3.0 2.6 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|48477600|ref|YP_023306.1| - 4.4e-07 29.9 7.5 2.6e-06 27.4 7.7 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|48477600|ref|YP_023306.1| - 4.4e-06 26.7 8.3 0.00065 19.8 10.2 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|48477600|ref|YP_023306.1| - 5.6e-06 26.4 6.4 0.0027 17.8 1.9 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|48477600|ref|YP_023306.1| - 6.2e-06 26.7 10.2 0.00013 22.5 11.4 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|48477600|ref|YP_023306.1| - 3.5e-05 24.2 2.4 0.2 12.2 1.2 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|48477600|ref|YP_023306.1| - 6e-05 23.4 7.8 0.00016 22.1 7.7 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|48477600|ref|YP_023306.1| - 6e-05 22.9 12.9 0.054 13.6 5.5 2.5 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|48477600|ref|YP_023306.1| - 0.00036 21.4 19.8 0.0015 19.4 9.4 2.1 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_13 PF13370.6 gi|48477600|ref|YP_023306.1| - 0.00036 21.0 7.6 0.18 12.4 0.3 2.4 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_4 PF12800.7 gi|48477600|ref|YP_023306.1| - 0.0004 20.7 6.4 0.065 13.8 2.9 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.6 gi|48477600|ref|YP_023306.1| - 0.00053 20.2 3.0 0.03 14.5 1.1 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|48477600|ref|YP_023306.1| - 0.0031 18.3 12.6 0.039 14.9 4.4 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_22 PF17179.4 gi|48477600|ref|YP_023306.1| - 0.37 11.7 6.0 11 7.0 3.2 2.4 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|48477600|ref|YP_023306.1| - 0.55 10.4 14.5 1.4 9.2 3.9 2.7 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_15 PF13459.6 gi|48477600|ref|YP_023306.1| - 2.5 8.9 13.1 0.41 11.4 1.6 2.8 2 2 0 2 2 2 0 4Fe-4S single cluster domain ACT_7 PF13840.6 gi|48477601|ref|YP_023307.1| - 3.1e-06 26.9 2.9 2.7e-05 23.9 0.1 2.5 2 0 0 2 2 2 2 ACT domain ScsC_N PF18312.1 gi|48477601|ref|YP_023307.1| - 0.057 13.2 0.1 0.12 12.2 0.1 1.6 1 0 0 1 1 1 0 Copper resistance protein ScsC N-terminal domain Arginosuc_synth PF00764.19 gi|48477602|ref|YP_023308.1| - 3.9e-133 444.5 0.1 4.7e-133 444.2 0.1 1.0 1 0 0 1 1 1 1 Arginosuccinate synthase QueC PF06508.13 gi|48477602|ref|YP_023308.1| - 0.0028 17.2 0.0 0.0076 15.8 0.0 1.7 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC Lipocalin_5 PF13924.6 gi|48477602|ref|YP_023308.1| - 0.075 12.8 0.0 0.13 12.0 0.0 1.3 1 0 0 1 1 1 0 Lipocalin-like domain Lyase_1 PF00206.20 gi|48477603|ref|YP_023309.1| - 3.2e-18 66.2 0.0 6.5e-18 65.2 0.0 1.4 1 1 0 1 1 1 1 Lyase tRNA-synt_1 PF00133.22 gi|48477604|ref|YP_023310.1| - 3.6e-105 352.5 0.3 6.9e-104 348.3 0.3 2.1 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|48477604|ref|YP_023310.1| - 3.8e-35 121.1 2.5 8.4e-35 120.0 2.5 1.6 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 gi|48477604|ref|YP_023310.1| - 2.1e-20 72.9 6.7 7.2e-11 41.4 0.0 3.9 4 0 0 4 4 4 3 tRNA synthetases class I (M) tRNA-synt_1e PF01406.19 gi|48477604|ref|YP_023310.1| - 1e-07 31.6 0.1 0.0097 15.3 0.0 2.8 3 0 0 3 3 3 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1_2 PF13603.6 gi|48477604|ref|YP_023310.1| - 0.00021 20.8 0.0 0.0011 18.5 0.0 2.1 1 1 1 2 2 2 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1f PF01921.18 gi|48477604|ref|YP_023310.1| - 0.0012 17.8 0.0 0.014 14.4 0.0 2.3 2 0 0 2 2 2 1 tRNA synthetases class I (K) zf-TFIIB PF13453.6 gi|48477604|ref|YP_023310.1| - 0.0014 17.9 2.1 0.71 9.3 0.1 2.8 2 0 0 2 2 2 2 Transcription factor zinc-finger DUF4041 PF13250.6 gi|48477604|ref|YP_023310.1| - 0.0016 18.3 1.0 0.0016 18.3 1.0 2.7 3 0 0 3 3 3 1 Domain of unknown function (DUF4041) Mut7-C PF01927.16 gi|48477604|ref|YP_023310.1| - 0.041 14.0 0.0 0.21 11.7 0.0 2.2 1 1 0 1 1 1 0 Mut7-C RNAse domain Gln-synt_C PF00120.24 gi|48477605|ref|YP_023311.1| - 7.2e-124 413.3 0.0 8.5e-124 413.0 0.0 1.0 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.19 gi|48477605|ref|YP_023311.1| - 4.4e-24 84.0 0.1 2.8e-23 81.5 0.1 2.4 3 0 0 3 3 3 1 Glutamine synthetase, beta-Grasp domain NAC PF01849.18 gi|48477606|ref|YP_023312.1| - 5.4e-16 58.3 2.8 1.8e-14 53.4 0.8 2.1 2 0 0 2 2 2 2 NAC domain UPF0154 PF03672.13 gi|48477606|ref|YP_023312.1| - 0.026 14.5 2.6 0.026 14.5 2.6 2.6 4 0 0 4 4 4 0 Uncharacterised protein family (UPF0154) SPT6_acidic PF14632.6 gi|48477606|ref|YP_023312.1| - 0.038 14.6 0.9 0.052 14.1 0.9 1.3 1 1 0 1 1 1 0 Acidic N-terminal SPT6 tRNA_NucTransf2 PF09249.11 gi|48477607|ref|YP_023313.1| - 8e-37 126.0 0.1 1.8e-36 124.8 0.1 1.6 1 0 0 1 1 1 1 tRNA nucleotidyltransferase, second domain NTP_transf_2 PF01909.23 gi|48477607|ref|YP_023313.1| - 2.4e-17 63.0 0.1 5.7e-17 61.8 0.1 1.7 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|48477607|ref|YP_023313.1| - 0.00021 21.3 1.6 0.0012 18.9 0.1 2.6 2 0 0 2 2 2 1 Polymerase beta, Nucleotidyltransferase SMODS PF18144.1 gi|48477607|ref|YP_023313.1| - 0.0035 17.5 0.1 0.0097 16.1 0.1 1.8 1 0 0 1 1 1 1 Second Messenger Oligonucleotide or Dinucleotide Synthetase domain ATP-grasp_5 PF13549.6 gi|48477608|ref|YP_023314.1| - 7.4e-44 149.8 0.2 1.7e-43 148.7 0.2 1.6 1 0 0 1 1 1 1 ATP-grasp domain Succ_CoA_lig PF13607.6 gi|48477608|ref|YP_023314.1| - 6.3e-43 145.9 0.1 1.2e-42 145.0 0.1 1.5 1 0 0 1 1 1 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|48477608|ref|YP_023314.1| - 5.4e-22 78.5 0.0 1.2e-21 77.4 0.0 1.6 1 0 0 1 1 1 1 CoA binding domain CoA_binding PF02629.19 gi|48477608|ref|YP_023314.1| - 4.9e-12 46.4 0.5 1.4e-11 44.9 0.5 1.9 1 0 0 1 1 1 1 CoA binding domain ATP-grasp_2 PF08442.10 gi|48477608|ref|YP_023314.1| - 0.00017 21.3 0.1 0.063 12.8 0.0 2.6 2 0 0 2 2 2 2 ATP-grasp domain GARS_A PF01071.19 gi|48477608|ref|YP_023314.1| - 0.0025 17.6 0.0 0.0055 16.5 0.0 1.6 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATP-grasp PF02222.22 gi|48477608|ref|YP_023314.1| - 0.03 13.9 0.0 0.071 12.7 0.0 1.6 1 0 0 1 1 1 0 ATP-grasp domain DbpA PF03880.15 gi|48477608|ref|YP_023314.1| - 0.096 12.7 4.8 5.7 7.0 0.0 4.6 5 1 1 6 6 6 0 DbpA RNA binding domain ThiS-like PF14453.6 gi|48477609|ref|YP_023315.1| - 3e-05 24.0 0.3 3.8e-05 23.6 0.3 1.1 1 0 0 1 1 1 1 ThiS-like ubiquitin ThiS PF02597.20 gi|48477609|ref|YP_023315.1| - 4e-05 24.2 0.0 4.1e-05 24.1 0.0 1.0 1 0 0 1 1 1 1 ThiS family DUF1641 PF07849.11 gi|48477610|ref|YP_023316.1| - 2.2e-14 53.1 0.4 7.2e-14 51.4 0.0 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF1641) DDE_Tnp_2 PF04693.12 gi|48477610|ref|YP_023316.1| - 0.073 12.3 1.1 0.17 11.1 0.1 1.9 1 1 1 2 2 2 0 Archaeal putative transposase ISC1217 Pyr_redox_2 PF07992.14 gi|48477611|ref|YP_023317.1| - 6.5e-21 74.8 0.0 6e-20 71.7 0.0 1.9 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|48477611|ref|YP_023317.1| - 0.001 19.6 0.0 1 10.0 0.0 3.0 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase KOW PF00467.29 gi|48477611|ref|YP_023317.1| - 0.023 14.6 0.4 1.9 8.5 0.1 2.4 2 0 0 2 2 2 0 KOW motif CBS PF00571.28 gi|48477612|ref|YP_023318.1| - 3.1e-23 82.0 0.9 1.3e-12 48.0 0.3 2.2 2 0 0 2 2 2 2 CBS domain IF3_N PF05198.16 gi|48477612|ref|YP_023318.1| - 0.049 13.9 0.1 1.3 9.3 0.0 2.6 1 1 1 2 2 2 0 Translation initiation factor IF-3, N-terminal domain Tox-PL-2 PF15643.6 gi|48477612|ref|YP_023318.1| - 0.05 13.7 0.1 0.11 12.6 0.1 1.5 1 1 0 1 1 1 0 Papain fold toxin 2 Epimerase PF01370.21 gi|48477613|ref|YP_023319.1| - 2e-47 161.7 0.1 2.6e-47 161.3 0.1 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|48477613|ref|YP_023319.1| - 5.6e-41 141.0 0.9 7.2e-41 140.7 0.9 1.1 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase RmlD_sub_bind PF04321.17 gi|48477613|ref|YP_023319.1| - 1.4e-15 57.2 0.0 1.8e-15 56.8 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.19 gi|48477613|ref|YP_023319.1| - 1.9e-14 53.4 0.3 2.5e-14 53.0 0.3 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 gi|48477613|ref|YP_023319.1| - 8.2e-14 51.4 0.5 3.1e-12 46.3 0.5 2.6 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.12 gi|48477613|ref|YP_023319.1| - 7.3e-10 38.4 0.1 4.6e-05 22.7 0.0 2.7 2 1 0 2 2 2 2 Male sterility protein NAD_binding_10 PF13460.6 gi|48477613|ref|YP_023319.1| - 0.00016 21.7 0.0 0.00039 20.4 0.0 1.6 2 0 0 2 2 2 1 NAD(P)H-binding adh_short PF00106.25 gi|48477613|ref|YP_023319.1| - 0.002 17.6 0.2 0.14 11.6 0.0 2.5 2 1 0 2 2 2 1 short chain dehydrogenase DUF1188 PF06690.11 gi|48477613|ref|YP_023319.1| - 0.009 15.6 0.3 0.016 14.7 0.3 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF1188) Sacchrp_dh_NADP PF03435.18 gi|48477613|ref|YP_023319.1| - 0.0099 16.1 0.0 0.018 15.3 0.0 1.4 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain TrkA_N PF02254.18 gi|48477613|ref|YP_023319.1| - 0.038 14.2 0.0 0.07 13.4 0.0 1.5 1 0 0 1 1 1 0 TrkA-N domain tRNA-synt_1g PF09334.11 gi|48477614|ref|YP_023320.1| - 6.3e-145 482.8 0.0 8.3e-145 482.4 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (M) tRNA_bind PF01588.20 gi|48477614|ref|YP_023320.1| - 1.1e-15 57.6 0.0 2e-15 56.7 0.0 1.4 1 0 0 1 1 1 1 Putative tRNA binding domain tRNA-synt_1 PF00133.22 gi|48477614|ref|YP_023320.1| - 1.5e-12 46.6 0.0 1.8e-08 33.1 0.0 2.6 2 1 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1e PF01406.19 gi|48477614|ref|YP_023320.1| - 1.1e-07 31.5 0.0 0.00011 21.7 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.18 gi|48477614|ref|YP_023320.1| - 0.00064 18.7 0.1 0.0066 15.4 0.0 2.2 2 0 0 2 2 2 1 tRNA synthetases class I (K) DZR PF12773.7 gi|48477614|ref|YP_023320.1| - 0.71 9.9 3.0 1.4 9.0 3.0 1.5 1 0 0 1 1 1 0 Double zinc ribbon RNA_pol_Rpb6 PF01192.22 gi|48477615|ref|YP_023321.1| - 4.8e-14 52.0 0.1 6.2e-14 51.7 0.1 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb6 Cob_adeno_trans PF01923.18 gi|48477616|ref|YP_023322.1| - 6.1e-44 150.1 0.0 6.8e-44 149.9 0.0 1.0 1 0 0 1 1 1 1 Cobalamin adenosyltransferase BPL_LplA_LipB PF03099.19 gi|48477617|ref|YP_023323.1| - 0.0001 22.2 0.0 0.00014 21.8 0.0 1.2 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family DUF2790 PF10976.8 gi|48477617|ref|YP_023323.1| - 0.18 11.8 0.2 2.8 8.0 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2790) Pyr_redox_2 PF07992.14 gi|48477618|ref|YP_023324.1| - 1.9e-61 207.9 0.4 2.3e-61 207.6 0.4 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|48477618|ref|YP_023324.1| - 6.2e-19 68.4 3.6 7.9e-15 54.9 1.2 2.0 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|48477618|ref|YP_023324.1| - 1e-18 67.6 2.9 2.5e-17 63.2 0.4 2.7 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|48477618|ref|YP_023324.1| - 2.4e-15 56.7 0.0 2e-14 53.8 0.0 2.4 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain FAD_binding_2 PF00890.24 gi|48477618|ref|YP_023324.1| - 2.9e-08 33.2 1.0 0.00019 20.7 0.0 3.3 4 0 0 4 4 4 2 FAD binding domain HI0933_like PF03486.14 gi|48477618|ref|YP_023324.1| - 5.4e-08 31.9 7.7 0.0005 18.9 0.1 3.3 2 1 1 3 3 3 2 HI0933-like protein GIDA PF01134.22 gi|48477618|ref|YP_023324.1| - 8.9e-07 28.3 6.3 0.00017 20.8 0.1 3.2 2 2 2 4 4 4 2 Glucose inhibited division protein A NAD_binding_8 PF13450.6 gi|48477618|ref|YP_023324.1| - 3.1e-06 27.3 0.4 0.0044 17.2 0.0 2.5 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain FAD_oxidored PF12831.7 gi|48477618|ref|YP_023324.1| - 7.6e-06 25.5 0.0 0.0008 18.9 0.0 2.3 2 0 0 2 2 2 1 FAD dependent oxidoreductase UDPG_MGDP_dh_N PF03721.14 gi|48477618|ref|YP_023324.1| - 3.7e-05 23.4 0.5 7.6e-05 22.4 0.5 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DAO PF01266.24 gi|48477618|ref|YP_023324.1| - 4.2e-05 23.3 5.0 0.13 11.9 0.0 3.3 3 1 1 4 4 4 2 FAD dependent oxidoreductase 3HCDH_N PF02737.18 gi|48477618|ref|YP_023324.1| - 4.3e-05 23.5 0.9 0.00048 20.0 0.1 2.3 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TrkA_N PF02254.18 gi|48477618|ref|YP_023324.1| - 7.1e-05 23.0 1.2 0.059 13.6 0.2 2.6 2 0 0 2 2 2 2 TrkA-N domain Thi4 PF01946.17 gi|48477618|ref|YP_023324.1| - 0.00029 20.1 0.3 0.0096 15.2 0.0 2.3 2 0 0 2 2 2 1 Thi4 family FAD_binding_3 PF01494.19 gi|48477618|ref|YP_023324.1| - 0.00052 19.4 0.0 0.35 10.0 0.0 2.2 2 0 0 2 2 2 2 FAD binding domain NAD_Gly3P_dh_N PF01210.23 gi|48477618|ref|YP_023324.1| - 0.0026 17.8 0.1 1.2 9.2 0.0 2.5 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ApbA PF02558.16 gi|48477618|ref|YP_023324.1| - 0.003 17.2 0.4 1.2 8.7 0.0 2.3 2 0 0 2 2 2 2 Ketopantoate reductase PanE/ApbA AlaDh_PNT_C PF01262.21 gi|48477618|ref|YP_023324.1| - 0.0037 16.6 0.1 0.22 10.8 0.1 2.6 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain Lycopene_cycl PF05834.12 gi|48477618|ref|YP_023324.1| - 0.005 15.9 3.3 5.7 5.9 0.0 3.1 2 1 1 3 3 3 1 Lycopene cyclase protein NAD_binding_7 PF13241.6 gi|48477618|ref|YP_023324.1| - 0.028 14.8 0.0 13 6.3 0.0 2.4 2 0 0 2 2 2 0 Putative NAD(P)-binding Trp_halogenase PF04820.14 gi|48477618|ref|YP_023324.1| - 0.043 12.7 0.3 0.23 10.3 0.0 2.0 2 0 0 2 2 2 0 Tryptophan halogenase F420_oxidored PF03807.17 gi|48477618|ref|YP_023324.1| - 0.077 13.6 0.8 0.2 12.3 0.1 2.1 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent adh_short PF00106.25 gi|48477618|ref|YP_023324.1| - 0.12 11.8 0.6 1.4 8.4 0.1 2.2 2 0 0 2 2 2 0 short chain dehydrogenase NAD_binding_9 PF13454.6 gi|48477618|ref|YP_023324.1| - 0.3 11.1 1.5 3.1 7.8 0.0 2.8 3 0 0 3 3 3 0 FAD-NAD(P)-binding 2-oxoacid_dh PF00198.23 gi|48477619|ref|YP_023325.1| - 1.7e-67 227.3 0.0 2.5e-67 226.8 0.0 1.2 1 0 0 1 1 1 1 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Biotin_lipoyl PF00364.22 gi|48477619|ref|YP_023325.1| - 3.8e-21 74.7 5.0 9e-21 73.5 5.0 1.7 1 0 0 1 1 1 1 Biotin-requiring enzyme E3_binding PF02817.17 gi|48477619|ref|YP_023325.1| - 1.2e-13 51.1 0.5 2.3e-13 50.2 0.5 1.5 1 0 0 1 1 1 1 e3 binding domain Biotin_lipoyl_2 PF13533.6 gi|48477619|ref|YP_023325.1| - 2.2e-10 40.2 1.2 3.4e-05 23.6 0.1 2.4 1 1 1 2 2 2 2 Biotin-lipoyl like HlyD_3 PF13437.6 gi|48477619|ref|YP_023325.1| - 9.8e-05 23.0 1.4 0.45 11.2 0.2 2.7 1 1 1 2 2 2 2 HlyD family secretion protein GCV_H PF01597.19 gi|48477619|ref|YP_023325.1| - 0.00024 21.0 7.2 0.092 12.6 0.5 3.7 2 1 2 4 4 4 2 Glycine cleavage H-protein RnfC_N PF13375.6 gi|48477619|ref|YP_023325.1| - 0.0011 18.8 0.2 0.0046 16.9 0.2 2.0 1 1 0 1 1 1 1 RnfC Barrel sandwich hybrid domain PTS_EIIA_1 PF00358.20 gi|48477619|ref|YP_023325.1| - 0.0042 16.9 1.3 1 9.2 0.1 3.2 2 1 1 3 3 3 1 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 HlyD_D23 PF16576.5 gi|48477619|ref|YP_023325.1| - 0.057 12.6 1.0 2.5 7.2 0.1 2.6 1 1 1 2 2 2 0 Barrel-sandwich domain of CusB or HlyD membrane-fusion PYNP_C PF07831.13 gi|48477619|ref|YP_023325.1| - 0.19 11.4 1.1 11 5.8 0.1 2.7 2 0 0 2 2 2 0 Pyrimidine nucleoside phosphorylase C-terminal domain DUF4889 PF16230.5 gi|48477619|ref|YP_023325.1| - 2.3 8.5 8.8 0.22 11.7 0.9 3.1 3 0 0 3 3 3 0 Domain of unknown function (DUF4889) Transket_pyr PF02779.24 gi|48477620|ref|YP_023326.1| - 1.7e-47 161.4 0.0 2.4e-47 160.9 0.0 1.2 1 0 0 1 1 1 1 Transketolase, pyrimidine binding domain Transketolase_C PF02780.20 gi|48477620|ref|YP_023326.1| - 7e-32 109.9 0.1 1.2e-31 109.2 0.1 1.4 1 0 0 1 1 1 1 Transketolase, C-terminal domain E1_dh PF00676.20 gi|48477621|ref|YP_023327.1| - 4.7e-62 209.6 0.0 5.4e-62 209.4 0.0 1.0 1 0 0 1 1 1 1 Dehydrogenase E1 component TPP_enzyme_C PF02775.21 gi|48477621|ref|YP_023327.1| - 9.5e-06 25.5 0.5 0.00034 20.4 0.5 2.4 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DXP_synthase_N PF13292.6 gi|48477621|ref|YP_023327.1| - 0.00048 19.4 0.3 0.0032 16.7 0.0 2.2 2 0 0 2 2 2 1 1-deoxy-D-xylulose-5-phosphate synthase TPP_enzyme_N PF02776.18 gi|48477621|ref|YP_023327.1| - 0.073 12.7 0.0 0.12 12.0 0.0 1.4 1 0 0 1 1 1 0 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Radical_SAM PF04055.21 gi|48477622|ref|YP_023328.1| - 4.4e-16 59.7 0.1 7e-16 59.1 0.1 1.3 1 0 0 1 1 1 1 Radical SAM superfamily LIAS_N PF16881.5 gi|48477622|ref|YP_023328.1| - 2.5e-06 27.8 0.0 4.8e-06 27.0 0.0 1.4 1 0 0 1 1 1 1 N-terminal domain of lipoyl synthase of Radical_SAM family Pterin_bind PF00809.22 gi|48477623|ref|YP_023329.1| - 1.3e-61 208.4 0.0 1.5e-61 208.2 0.0 1.1 1 0 0 1 1 1 1 Pterin binding enzyme MFS_1 PF07690.16 gi|48477624|ref|YP_023330.1| - 3.6e-22 78.8 59.2 4.8e-10 38.9 30.9 3.0 1 1 2 3 3 3 3 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|48477625|ref|YP_023331.1| - 2.3e-44 152.0 29.2 3e-44 151.6 29.2 1.1 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.16 gi|48477625|ref|YP_023331.1| - 2.5e-33 115.5 48.7 7.7e-28 97.4 39.6 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_4 PF06779.14 gi|48477625|ref|YP_023331.1| - 8.1e-05 22.1 1.5 8.1e-05 22.1 1.5 2.9 2 1 1 3 3 3 1 Uncharacterised MFS-type transporter YbfB ABC_tran PF00005.27 gi|48477627|ref|YP_023333.1| - 3.2e-35 121.6 0.0 1.2e-16 61.4 0.0 2.5 2 0 0 2 2 2 2 ABC transporter SMC_N PF02463.19 gi|48477627|ref|YP_023333.1| - 1.9e-12 47.1 3.2 3.8e-06 26.5 0.0 2.7 2 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain RLI PF04068.15 gi|48477627|ref|YP_023333.1| - 1.1e-11 44.3 4.1 2.7e-11 43.1 4.1 1.7 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI AAA_21 PF13304.6 gi|48477627|ref|YP_023333.1| - 4.9e-09 36.4 13.0 0.023 14.5 0.2 4.2 2 2 2 4 4 4 3 AAA domain, putative AbiEii toxin, Type IV TA system Fer4 PF00037.27 gi|48477627|ref|YP_023333.1| - 4.2e-08 32.7 4.0 4.2e-08 32.7 4.0 1.9 2 0 0 2 2 1 1 4Fe-4S binding domain AAA_15 PF13175.6 gi|48477627|ref|YP_023333.1| - 5.2e-06 26.4 2.6 0.097 12.4 0.2 3.3 2 1 1 3 3 3 2 AAA ATPase domain Fer4_6 PF12837.7 gi|48477627|ref|YP_023333.1| - 2.8e-05 24.0 3.4 2.8e-05 24.0 3.4 2.2 2 0 0 2 2 1 1 4Fe-4S binding domain Fer4_21 PF14697.6 gi|48477627|ref|YP_023333.1| - 0.00046 20.3 6.8 0.00079 19.5 6.8 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain AAA_23 PF13476.6 gi|48477627|ref|YP_023333.1| - 0.00056 20.5 0.9 1.3 9.5 0.0 2.7 2 1 0 2 2 2 2 AAA domain AAA_29 PF13555.6 gi|48477627|ref|YP_023333.1| - 0.0017 18.1 0.3 0.98 9.2 0.1 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain Fer4_7 PF12838.7 gi|48477627|ref|YP_023333.1| - 0.0017 18.9 1.6 0.0017 18.9 1.6 1.9 1 1 2 3 3 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|48477627|ref|YP_023333.1| - 0.0019 18.3 10.7 0.0023 18.0 1.6 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|48477627|ref|YP_023333.1| - 0.0048 17.0 7.6 0.0089 16.2 7.6 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|48477627|ref|YP_023333.1| - 0.012 15.7 2.6 0.012 15.7 2.6 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_17 PF13534.6 gi|48477627|ref|YP_023333.1| - 0.028 14.9 0.1 0.028 14.9 0.1 2.3 2 0 0 2 2 1 0 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|48477627|ref|YP_023333.1| - 0.042 14.8 1.9 0.042 14.8 1.9 2.3 1 1 0 2 2 1 0 4Fe-4S double cluster binding domain AAA_24 PF13479.6 gi|48477627|ref|YP_023333.1| - 0.052 13.3 0.1 3.4 7.3 0.0 2.3 2 0 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.23 gi|48477627|ref|YP_023333.1| - 0.1 12.7 0.7 4.7 7.3 0.0 2.7 2 1 0 2 2 2 0 50S ribosome-binding GTPase AAA_25 PF13481.6 gi|48477627|ref|YP_023333.1| - 0.1 12.2 0.0 6.4 6.3 0.0 2.4 2 0 0 2 2 2 0 AAA domain SbcCD_C PF13558.6 gi|48477627|ref|YP_023333.1| - 0.12 12.7 0.0 20 5.5 0.0 2.7 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit Fer4_4 PF12800.7 gi|48477627|ref|YP_023333.1| - 2 9.1 11.8 0.23 12.0 2.7 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_3 PF12798.7 gi|48477627|ref|YP_023333.1| - 6.6 7.9 15.5 0.096 13.7 3.9 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain RHH_8 PF17723.1 gi|48477628|ref|YP_023334.1| - 0.11 12.7 0.1 0.2 11.9 0.1 1.4 1 0 0 1 1 1 0 Ribbon-Helix-Helix transcriptional regulator family HTH_3 PF01381.22 gi|48477629|ref|YP_023335.1| - 6.9e-10 38.8 2.7 2.1e-09 37.3 0.5 2.6 3 0 0 3 3 3 1 Helix-turn-helix HTH_19 PF12844.7 gi|48477629|ref|YP_023335.1| - 4e-07 30.0 0.6 4e-07 30.0 0.6 3.0 3 1 0 3 3 3 1 Helix-turn-helix domain PolC_DP2 PF03833.13 gi|48477630|ref|YP_023336.1| - 0 1125.1 0.1 0 1123.3 0.1 1.8 1 1 0 1 1 1 1 DNA polymerase II large subunit DP2 DZR PF12773.7 gi|48477630|ref|YP_023336.1| - 7e-05 22.8 5.4 0.0069 16.4 0.4 2.4 2 0 0 2 2 2 2 Double zinc ribbon HypA PF01155.19 gi|48477630|ref|YP_023336.1| - 0.00072 19.6 2.3 1 9.4 0.2 2.7 2 0 0 2 2 2 2 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Rubredoxin_2 PF18073.1 gi|48477630|ref|YP_023336.1| - 0.043 13.5 7.4 0.15 11.8 0.4 2.6 2 0 0 2 2 2 0 Rubredoxin metal binding domain zf-ribbon_3 PF13248.6 gi|48477630|ref|YP_023336.1| - 5.5 6.6 10.8 0.83 9.1 0.2 3.2 4 0 0 4 4 4 0 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|48477630|ref|YP_023336.1| - 8.8 6.2 11.0 15 5.5 0.1 4.0 4 0 0 4 4 4 0 zinc-ribbon domain SCP2 PF02036.17 gi|48477631|ref|YP_023337.1| - 1.5e-09 38.2 0.2 1.7e-09 38.1 0.2 1.1 1 0 0 1 1 1 1 SCP-2 sterol transfer family Alkyl_sulf_C PF14864.6 gi|48477631|ref|YP_023337.1| - 2.4e-06 27.9 0.2 3.2e-06 27.4 0.2 1.3 1 1 0 1 1 1 1 Alkyl sulfatase C-terminal DUF1398 PF07166.11 gi|48477631|ref|YP_023337.1| - 0.073 13.1 0.9 0.087 12.9 0.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1398) CTP_synth_N PF06418.14 gi|48477632|ref|YP_023338.1| - 3.1e-116 387.3 2.2 4.9e-116 386.7 2.2 1.2 1 0 0 1 1 1 1 CTP synthase N-terminus GATase PF00117.28 gi|48477632|ref|YP_023338.1| - 1.2e-48 165.4 0.0 4.1e-48 163.7 0.0 1.8 2 0 0 2 2 2 1 Glutamine amidotransferase class-I CbiA PF01656.23 gi|48477632|ref|YP_023338.1| - 0.00023 21.2 0.0 0.00066 19.7 0.0 2.0 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Peptidase_C26 PF07722.13 gi|48477632|ref|YP_023338.1| - 0.00031 20.6 0.0 0.039 13.7 0.0 2.6 1 1 1 2 2 2 1 Peptidase C26 AAA_31 PF13614.6 gi|48477632|ref|YP_023338.1| - 0.0029 17.5 0.5 0.034 14.1 0.0 2.9 2 2 1 3 3 3 1 AAA domain MeaB PF03308.16 gi|48477632|ref|YP_023338.1| - 0.032 13.2 0.7 0.044 12.8 0.0 1.5 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB Ribo_biogen_C PF04034.13 gi|48477633|ref|YP_023339.1| - 2.6e-40 137.1 0.0 3.2e-40 136.8 0.0 1.1 1 0 0 1 1 1 1 Ribosome biogenesis protein, C-terminal RLI PF04068.15 gi|48477633|ref|YP_023339.1| - 0.026 14.3 0.2 0.059 13.2 0.0 1.6 2 0 0 2 2 2 0 Possible Fer4-like domain in RNase L inhibitor, RLI DHOR PF06537.11 gi|48477634|ref|YP_023340.1| - 0.34 9.5 0.9 0.52 8.9 0.9 1.1 1 0 0 1 1 1 0 Di-haem oxidoreductase, putative peroxidase DUF1611 PF07755.11 gi|48477635|ref|YP_023341.1| - 2.3e-68 229.4 0.0 3.8e-68 228.7 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1611_C) P-loop domain DUF1611_N PF17396.2 gi|48477635|ref|YP_023341.1| - 8.4e-33 112.5 0.0 2.3e-32 111.1 0.0 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF1611_N) Rossmann-like domain CbiA PF01656.23 gi|48477635|ref|YP_023341.1| - 0.053 13.6 0.0 0.23 11.5 0.0 2.0 2 1 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain DUF2064 PF09837.9 gi|48477635|ref|YP_023341.1| - 0.11 12.3 0.0 11 5.9 0.0 2.8 3 0 0 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2064) PALP PF00291.25 gi|48477636|ref|YP_023342.1| - 2.3e-48 165.1 0.0 2.8e-48 164.8 0.0 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme TGBp3 PF02495.17 gi|48477636|ref|YP_023342.1| - 0.058 13.1 0.0 0.1 12.3 0.0 1.3 1 0 0 1 1 1 0 Triple gene block 3 Rib_5-P_isom_A PF06026.14 gi|48477637|ref|YP_023343.1| - 7.9e-55 185.1 0.0 9.4e-55 184.9 0.0 1.1 1 0 0 1 1 1 1 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DeoRC PF00455.22 gi|48477637|ref|YP_023343.1| - 3.5e-07 30.3 0.0 0.00088 19.2 0.0 2.3 2 0 0 2 2 2 2 DeoR C terminal sensor domain PhoU PF01895.19 gi|48477638|ref|YP_023344.1| - 8.2e-16 58.2 11.0 4.7e-13 49.4 2.5 3.1 3 1 0 3 3 3 2 PhoU domain MazE_antitoxin PF04014.18 gi|48477638|ref|YP_023344.1| - 2.2e-09 37.0 0.0 5.7e-09 35.7 0.0 1.8 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin PT-HINT PF07591.11 gi|48477638|ref|YP_023344.1| - 0.11 12.8 1.6 0.65 10.2 0.1 2.4 2 1 1 3 3 3 0 Pretoxin HINT domain Pex24p PF06398.11 gi|48477639|ref|YP_023345.1| - 0.19 10.7 4.3 3.7 6.4 0.1 2.2 2 0 0 2 2 2 0 Integral peroxisomal membrane peroxin Stevor PF17410.2 gi|48477639|ref|YP_023345.1| - 2.9 7.4 7.1 2 7.9 2.0 2.2 2 0 0 2 2 2 0 Subtelomeric Variable Open Reading frame DUF4131 PF13567.6 gi|48477639|ref|YP_023345.1| - 8.7 6.0 8.0 23 4.6 5.0 2.4 2 1 1 3 3 3 0 Domain of unknown function (DUF4131) FAD_binding_3 PF01494.19 gi|48477640|ref|YP_023346.1| - 1e-17 64.5 0.2 2.4e-15 56.7 0.2 2.9 1 1 0 1 1 1 1 FAD binding domain NAD_binding_8 PF13450.6 gi|48477640|ref|YP_023346.1| - 1.9e-08 34.4 0.0 5.1e-08 33.0 0.0 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Lycopene_cycl PF05834.12 gi|48477640|ref|YP_023346.1| - 1.3e-06 27.8 0.0 0.0015 17.7 0.0 2.1 2 0 0 2 2 2 2 Lycopene cyclase protein HI0933_like PF03486.14 gi|48477640|ref|YP_023346.1| - 3.4e-06 26.0 0.0 5.3e-06 25.4 0.0 1.2 1 0 0 1 1 1 1 HI0933-like protein Thi4 PF01946.17 gi|48477640|ref|YP_023346.1| - 5.9e-06 25.7 0.0 9.8e-06 25.0 0.0 1.4 1 0 0 1 1 1 1 Thi4 family Pyr_redox_2 PF07992.14 gi|48477640|ref|YP_023346.1| - 3.4e-05 23.2 1.0 0.00078 18.8 0.1 2.1 1 1 1 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.14 gi|48477640|ref|YP_023346.1| - 0.00012 21.0 0.0 0.057 12.3 0.0 2.3 2 0 0 2 2 2 2 Tryptophan halogenase DAO PF01266.24 gi|48477640|ref|YP_023346.1| - 0.00014 21.6 0.1 0.00065 19.4 0.0 1.9 1 1 1 2 2 2 1 FAD dependent oxidoreductase FAD_oxidored PF12831.7 gi|48477640|ref|YP_023346.1| - 0.00031 20.2 0.0 0.00062 19.2 0.0 1.5 1 1 0 1 1 1 1 FAD dependent oxidoreductase GIDA PF01134.22 gi|48477640|ref|YP_023346.1| - 0.00047 19.4 0.1 0.001 18.2 0.1 1.7 1 1 0 1 1 1 1 Glucose inhibited division protein A FAD_binding_2 PF00890.24 gi|48477640|ref|YP_023346.1| - 0.00054 19.2 0.1 0.0028 16.8 0.0 1.9 1 1 1 2 2 2 1 FAD binding domain Pyr_redox_3 PF13738.6 gi|48477640|ref|YP_023346.1| - 0.012 14.9 0.0 0.025 13.9 0.0 1.5 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase SE PF08491.10 gi|48477640|ref|YP_023346.1| - 0.04 13.0 0.0 1.2 8.2 0.0 2.1 2 0 0 2 2 2 0 Squalene epoxidase ApbA PF02558.16 gi|48477640|ref|YP_023346.1| - 0.094 12.4 0.1 0.17 11.5 0.1 1.6 1 1 0 1 1 1 0 Ketopantoate reductase PanE/ApbA DUF763 PF05559.11 gi|48477641|ref|YP_023347.1| - 1.2e-107 359.8 0.0 1.4e-107 359.5 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF763) GTP_cyclohydro2 PF00925.20 gi|48477642|ref|YP_023348.1| - 6.7e-62 207.9 0.0 7.9e-62 207.7 0.0 1.0 1 0 0 1 1 1 1 GTP cyclohydrolase II Peptidase_C47 PF05543.13 gi|48477642|ref|YP_023348.1| - 0.099 12.2 0.0 0.15 11.6 0.0 1.4 1 0 0 1 1 1 0 Staphopain peptidase C47 PufQ PF05398.11 gi|48477643|ref|YP_023349.1| - 0.052 13.7 0.6 0.089 12.9 0.6 1.4 1 0 0 1 1 1 0 PufQ cytochrome subunit UbiA PF01040.18 gi|48477644|ref|YP_023350.1| - 1e-34 120.0 22.7 1.4e-34 119.5 22.7 1.3 1 0 0 1 1 1 1 UbiA prenyltransferase family DUF2752 PF10825.8 gi|48477644|ref|YP_023350.1| - 1.6 8.8 7.5 0.094 12.8 1.2 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2752) Pyr_redox_2 PF07992.14 gi|48477645|ref|YP_023351.1| - 1.3e-07 31.2 0.0 0.0029 16.9 0.1 3.5 3 1 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|48477645|ref|YP_023351.1| - 0.0067 15.7 0.1 0.013 14.8 0.1 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|48477645|ref|YP_023351.1| - 0.055 14.0 0.1 1.9 9.1 0.0 2.4 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|48477645|ref|YP_023351.1| - 0.16 11.2 0.0 0.26 10.5 0.0 1.3 1 0 0 1 1 1 0 Thi4 family HTH_24 PF13412.6 gi|48477646|ref|YP_023352.1| - 8.1e-18 63.7 3.2 2.3e-11 43.1 0.1 2.6 2 1 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|48477646|ref|YP_023352.1| - 7.3e-14 51.3 0.0 1.2e-07 31.4 0.0 2.3 2 0 0 2 2 2 2 AsnC-type helix-turn-helix domain MarR_2 PF12802.7 gi|48477646|ref|YP_023352.1| - 8.4e-07 28.8 0.0 0.0074 16.2 0.0 2.4 2 0 0 2 2 2 2 MarR family Rrf2 PF02082.20 gi|48477646|ref|YP_023352.1| - 0.00044 20.5 0.2 0.43 11.0 0.0 2.3 2 0 0 2 2 2 2 Transcriptional regulator HTH_45 PF14947.6 gi|48477646|ref|YP_023352.1| - 0.0022 18.0 1.0 0.22 11.5 0.1 2.5 2 0 0 2 2 2 1 Winged helix-turn-helix HTH_5 PF01022.20 gi|48477646|ref|YP_023352.1| - 0.011 15.5 0.0 3.9 7.4 0.0 2.4 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family MarR PF01047.22 gi|48477646|ref|YP_023352.1| - 0.015 15.2 0.0 6.4 6.8 0.0 2.3 2 0 0 2 2 2 0 MarR family HTH_11 PF08279.12 gi|48477646|ref|YP_023352.1| - 0.022 14.7 0.3 1.6 8.7 0.0 2.3 2 0 0 2 2 2 0 HTH domain HTH_20 PF12840.7 gi|48477646|ref|YP_023352.1| - 0.033 14.3 0.0 4.6 7.4 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_23 PF13384.6 gi|48477646|ref|YP_023352.1| - 0.037 13.8 0.1 6.7 6.6 0.0 2.4 2 0 0 2 2 2 0 Homeodomain-like domain B-block_TFIIIC PF04182.12 gi|48477646|ref|YP_023352.1| - 0.043 14.0 0.0 0.11 12.7 0.0 1.8 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC TrmB PF01978.19 gi|48477646|ref|YP_023352.1| - 0.052 13.4 0.1 1.5 8.8 0.0 2.4 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_12 PF08461.10 gi|48477646|ref|YP_023352.1| - 0.11 12.5 0.3 4.9 7.2 0.4 3.1 3 0 0 3 3 3 0 Ribonuclease R winged-helix domain HTH_8 PF02954.19 gi|48477646|ref|YP_023352.1| - 0.15 11.9 0.0 0.47 10.3 0.0 1.9 2 0 0 2 2 2 0 Bacterial regulatory protein, Fis family HTH_Tnp_Tc3_2 PF01498.18 gi|48477646|ref|YP_023352.1| - 0.16 12.3 0.2 0.64 10.3 0.1 2.0 2 0 0 2 2 2 0 Transposase Peptidase_M20 PF01546.28 gi|48477647|ref|YP_023353.1| - 1.6e-17 63.9 0.0 2.4e-17 63.3 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|48477647|ref|YP_023353.1| - 4.1e-17 62.1 0.1 1e-16 60.8 0.0 1.7 2 0 0 2 2 2 1 Peptidase dimerisation domain Peptidase_M28 PF04389.17 gi|48477647|ref|YP_023353.1| - 0.011 15.4 0.0 0.02 14.6 0.0 1.3 1 0 0 1 1 1 0 Peptidase family M28 Regulator_TrmB PF11495.8 gi|48477648|ref|YP_023354.1| - 1.5e-45 155.2 0.1 2.1e-45 154.7 0.1 1.2 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB TrmB PF01978.19 gi|48477648|ref|YP_023354.1| - 8.2e-19 67.3 0.0 1.4e-18 66.5 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|48477648|ref|YP_023354.1| - 0.0023 17.8 0.0 0.004 17.1 0.0 1.4 1 0 0 1 1 1 1 MarR family GDE_C PF06202.14 gi|48477649|ref|YP_023355.1| - 4.2e-07 29.2 0.0 3e-05 23.1 0.1 2.2 2 0 0 2 2 2 2 Amylo-alpha-1,6-glucosidase GDE_C PF06202.14 gi|48477650|ref|YP_023356.1| - 2.8e-10 39.7 0.3 6.7e-06 25.3 0.0 3.3 2 1 0 2 2 2 2 Amylo-alpha-1,6-glucosidase HEPN_DZIP3 PF18738.1 gi|48477650|ref|YP_023356.1| - 0.23 11.2 1.2 0.51 10.1 0.4 2.0 2 0 0 2 2 2 0 DZIP3/ hRUL138-like HEPN ABC_tran PF00005.27 gi|48477651|ref|YP_023357.1| - 5.8e-33 114.3 0.0 9.5e-33 113.6 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|48477651|ref|YP_023357.1| - 5.5e-07 29.7 1.4 0.021 14.6 0.7 2.3 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|48477651|ref|YP_023357.1| - 4e-05 23.1 1.6 0.0011 18.5 1.6 2.3 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain OB_MalK PF17912.1 gi|48477651|ref|YP_023357.1| - 6.6e-05 23.7 0.0 0.00018 22.3 0.0 1.8 1 0 0 1 1 1 1 MalK OB fold domain AAA_23 PF13476.6 gi|48477651|ref|YP_023357.1| - 0.0018 18.8 1.4 0.0034 17.9 0.6 1.8 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.6 gi|48477651|ref|YP_023357.1| - 0.003 17.2 0.1 0.0058 16.3 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|48477651|ref|YP_023357.1| - 0.0033 17.7 0.1 0.017 15.4 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|48477651|ref|YP_023357.1| - 0.004 17.6 0.0 0.021 15.2 0.0 1.9 1 1 1 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|48477651|ref|YP_023357.1| - 0.0044 17.4 0.0 0.0065 16.9 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_33 PF13671.6 gi|48477651|ref|YP_023357.1| - 0.005 17.0 0.0 0.02 15.1 0.0 1.8 1 1 0 1 1 1 1 AAA domain TOBE_2 PF08402.10 gi|48477651|ref|YP_023357.1| - 0.0084 16.3 0.0 0.017 15.3 0.0 1.5 1 0 0 1 1 1 1 TOBE domain NACHT PF05729.12 gi|48477651|ref|YP_023357.1| - 0.0087 16.0 0.0 0.017 15.1 0.0 1.4 1 0 0 1 1 1 1 NACHT domain RsgA_GTPase PF03193.16 gi|48477651|ref|YP_023357.1| - 0.0088 16.0 0.0 0.02 14.8 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase ATPase_2 PF01637.18 gi|48477651|ref|YP_023357.1| - 0.021 14.7 0.0 0.041 13.8 0.0 1.6 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_14 PF13173.6 gi|48477651|ref|YP_023357.1| - 0.03 14.4 0.0 0.074 13.1 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|48477651|ref|YP_023357.1| - 0.055 13.2 0.0 0.17 11.6 0.0 1.8 2 0 0 2 2 2 0 AAA domain cobW PF02492.19 gi|48477651|ref|YP_023357.1| - 0.059 12.9 0.1 0.13 11.8 0.1 1.6 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_28 PF13521.6 gi|48477651|ref|YP_023357.1| - 0.068 13.4 0.2 0.22 11.7 0.2 1.8 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|48477651|ref|YP_023357.1| - 0.073 12.8 0.0 0.19 11.4 0.0 1.6 2 0 0 2 2 2 0 AAA domain T2SSE PF00437.20 gi|48477651|ref|YP_023357.1| - 0.076 12.1 0.1 0.15 11.0 0.1 1.5 1 1 0 1 1 1 0 Type II/IV secretion system protein Mg_chelatase PF01078.21 gi|48477651|ref|YP_023357.1| - 0.098 12.0 0.0 0.21 10.9 0.0 1.5 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI G-alpha PF00503.20 gi|48477651|ref|YP_023357.1| - 0.13 11.4 0.1 0.19 10.9 0.1 1.3 1 1 0 1 1 1 0 G-protein alpha subunit Zeta_toxin PF06414.12 gi|48477651|ref|YP_023357.1| - 0.15 11.4 0.0 0.35 10.1 0.0 1.6 1 0 0 1 1 1 0 Zeta toxin SbcCD_C PF13558.6 gi|48477651|ref|YP_023357.1| - 0.25 11.6 0.2 4.2 7.7 0.2 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit BPD_transp_1 PF00528.22 gi|48477652|ref|YP_023358.1| - 4.9e-15 55.8 18.2 4.9e-15 55.8 18.2 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|48477653|ref|YP_023359.1| - 5.1e-11 42.7 25.3 5.1e-11 42.7 25.3 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_8 PF13416.6 gi|48477654|ref|YP_023360.1| - 2.6e-26 93.1 3.1 4e-26 92.5 3.1 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|48477654|ref|YP_023360.1| - 5.9e-16 59.3 7.2 5.9e-16 59.3 7.2 1.4 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein Cas_CXXC_CXXC PF09706.10 gi|48477655|ref|YP_023361.1| - 2 8.7 6.6 3.2 8.1 2.8 3.0 3 0 0 3 3 3 0 CRISPR-associated protein (Cas_CXXC_CXXC) N6_N4_Mtase PF01555.18 gi|48477657|ref|YP_023363.1| - 1.7e-49 168.7 0.6 2.1e-49 168.3 0.1 1.4 2 0 0 2 2 2 1 DNA methylase Methyltransf_25 PF13649.6 gi|48477657|ref|YP_023363.1| - 0.00039 21.1 0.0 0.023 15.4 0.0 2.3 2 0 0 2 2 2 1 Methyltransferase domain UPF0020 PF01170.18 gi|48477657|ref|YP_023363.1| - 0.00054 19.7 0.0 0.12 12.1 0.0 2.6 2 1 0 2 2 2 2 Putative RNA methylase family UPF0020 MethyltransfD12 PF02086.15 gi|48477657|ref|YP_023363.1| - 0.00079 19.2 0.1 0.003 17.3 0.0 1.9 2 0 0 2 2 2 1 D12 class N6 adenine-specific DNA methyltransferase Methyltransf_31 PF13847.6 gi|48477657|ref|YP_023363.1| - 0.0024 17.7 0.0 0.038 13.8 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|48477657|ref|YP_023363.1| - 0.0083 16.8 0.0 4 8.2 0.0 2.4 2 0 0 2 2 2 2 Methyltransferase domain PrmA PF06325.13 gi|48477657|ref|YP_023363.1| - 0.024 14.0 0.0 0.037 13.4 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) DUF5034 PF16437.5 gi|48477657|ref|YP_023363.1| - 0.045 13.7 0.0 0.11 12.5 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF5034) Methyltransf_12 PF08242.12 gi|48477657|ref|YP_023363.1| - 0.052 14.3 0.0 3.4 8.5 0.0 2.3 2 0 0 2 2 2 0 Methyltransferase domain ThaI PF15514.6 gi|48477658|ref|YP_023364.1| - 6.7e-121 401.3 0.3 7.6e-121 401.2 0.3 1.0 1 0 0 1 1 1 1 Restriction endonuclease ThaI Rep_fac_C PF08542.11 gi|48477659|ref|YP_023365.1| - 1.5e-18 66.9 0.5 2.8e-18 66.1 0.1 1.6 2 0 0 2 2 1 1 Replication factor C C-terminal domain AAA PF00004.29 gi|48477659|ref|YP_023365.1| - 7.3e-14 52.3 0.0 1.5e-13 51.3 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DNA_pol3_delta2 PF13177.6 gi|48477659|ref|YP_023365.1| - 8.3e-14 51.7 0.2 1e-09 38.4 0.1 2.6 2 1 1 3 3 3 2 DNA polymerase III, delta subunit AAA_assoc_2 PF16193.5 gi|48477659|ref|YP_023365.1| - 4.4e-06 27.0 0.1 1.5e-05 25.2 0.0 1.9 2 0 0 2 2 2 1 AAA C-terminal domain RuvB_N PF05496.12 gi|48477659|ref|YP_023365.1| - 8.2e-05 22.4 0.1 0.00067 19.4 0.1 2.1 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain ResIII PF04851.15 gi|48477659|ref|YP_023365.1| - 0.00011 22.3 0.2 0.0004 20.4 0.0 1.9 2 1 0 2 2 2 1 Type III restriction enzyme, res subunit AAA_24 PF13479.6 gi|48477659|ref|YP_023365.1| - 0.00023 20.9 0.1 0.0031 17.3 0.0 2.1 2 0 0 2 2 2 1 AAA domain DNA_pol3_delta PF06144.13 gi|48477659|ref|YP_023365.1| - 0.00068 19.5 0.0 0.0011 18.8 0.0 1.4 1 0 0 1 1 1 1 DNA polymerase III, delta subunit AAA_14 PF13173.6 gi|48477659|ref|YP_023365.1| - 0.001 19.1 0.0 0.0023 17.9 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|48477659|ref|YP_023365.1| - 0.0012 19.2 0.1 0.1 13.0 0.0 2.4 1 1 1 2 2 2 1 AAA ATPase domain TIP49 PF06068.13 gi|48477659|ref|YP_023365.1| - 0.0014 17.9 0.2 0.085 12.0 0.0 2.7 2 1 0 3 3 3 1 TIP49 P-loop domain Mg_chelatase PF01078.21 gi|48477659|ref|YP_023365.1| - 0.0016 17.9 0.0 0.21 10.9 0.0 2.2 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI IstB_IS21 PF01695.17 gi|48477659|ref|YP_023365.1| - 0.0021 17.8 0.0 0.006 16.3 0.0 1.8 2 0 0 2 2 2 1 IstB-like ATP binding protein Rad17 PF03215.15 gi|48477659|ref|YP_023365.1| - 0.0032 17.4 0.0 0.0064 16.4 0.0 1.5 1 1 0 1 1 1 1 Rad17 P-loop domain PhoH PF02562.16 gi|48477659|ref|YP_023365.1| - 0.0048 16.4 1.0 0.033 13.6 0.1 2.2 1 1 0 2 2 2 1 PhoH-like protein AAA_22 PF13401.6 gi|48477659|ref|YP_023365.1| - 0.024 14.9 0.9 9.5 6.5 0.2 2.7 1 1 1 2 2 2 0 AAA domain AAA_18 PF13238.6 gi|48477659|ref|YP_023365.1| - 0.04 14.4 0.6 0.8 10.3 0.0 2.5 2 1 0 2 2 2 0 AAA domain Sigma54_activat PF00158.26 gi|48477659|ref|YP_023365.1| - 0.044 13.5 0.0 8.2 6.1 0.0 2.4 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA_7 PF12775.7 gi|48477659|ref|YP_023365.1| - 0.047 13.2 0.0 0.08 12.4 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region T2SSE PF00437.20 gi|48477659|ref|YP_023365.1| - 0.088 11.8 0.0 1.1 8.3 0.0 2.2 2 0 0 2 2 2 0 Type II/IV secretion system protein HTH_46 PF15977.5 gi|48477659|ref|YP_023365.1| - 0.1 12.6 0.1 0.25 11.4 0.1 1.7 1 0 0 1 1 1 0 Winged helix-turn-helix DNA binding AAA_30 PF13604.6 gi|48477659|ref|YP_023365.1| - 0.13 11.9 0.0 1.2 8.8 0.0 2.2 2 0 0 2 2 2 0 AAA domain Ham1p_like PF01725.16 gi|48477660|ref|YP_023366.1| - 8e-42 143.3 0.0 8.9e-42 143.1 0.0 1.0 1 0 0 1 1 1 1 Ham1 family Pribosyltran PF00156.27 gi|48477661|ref|YP_023367.1| - 2.1e-18 66.4 0.0 2.8e-18 65.9 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain AA_kinase PF00696.28 gi|48477662|ref|YP_023368.1| - 2.2e-31 109.3 0.1 2.5e-31 109.1 0.1 1.0 1 0 0 1 1 1 1 Amino acid kinase family Ribosomal_S6e PF01092.19 gi|48477663|ref|YP_023369.1| - 4.4e-32 110.7 0.2 5.7e-32 110.3 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein S6e GTP_EFTU PF00009.27 gi|48477664|ref|YP_023370.1| - 2.4e-32 112.1 1.0 7.4e-32 110.5 1.0 1.7 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain eIF2_C PF09173.11 gi|48477664|ref|YP_023370.1| - 3.1e-30 104.3 0.0 6.8e-30 103.2 0.0 1.6 1 0 0 1 1 1 1 Initiation factor eIF2 gamma, C terminal MMR_HSR1 PF01926.23 gi|48477664|ref|YP_023370.1| - 1.4e-05 25.1 0.1 3.6e-05 23.8 0.1 1.7 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU_D2 PF03144.25 gi|48477664|ref|YP_023370.1| - 1.8e-05 25.1 0.3 4.4e-05 23.8 0.3 1.8 1 0 0 1 1 1 1 Elongation factor Tu domain 2 RsgA_GTPase PF03193.16 gi|48477664|ref|YP_023370.1| - 0.001 19.0 1.0 0.049 13.5 0.1 2.4 2 0 0 2 2 2 1 RsgA GTPase PduV-EutP PF10662.9 gi|48477664|ref|YP_023370.1| - 0.0087 15.8 2.1 1.3 8.8 0.2 2.8 3 0 0 3 3 3 2 Ethanolamine utilisation - propanediol utilisation FeoB_N PF02421.18 gi|48477664|ref|YP_023370.1| - 0.016 14.8 0.8 2.6 7.6 0.0 2.6 2 1 0 2 2 2 0 Ferrous iron transport protein B MMR_HSR1_Xtn PF16897.5 gi|48477664|ref|YP_023370.1| - 0.023 14.7 0.1 0.047 13.7 0.1 1.6 1 0 0 1 1 1 0 C-terminal region of MMR_HSR1 domain MeaB PF03308.16 gi|48477664|ref|YP_023370.1| - 0.081 11.9 0.7 0.48 9.4 0.1 2.2 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB HhH-GPD PF00730.25 gi|48477665|ref|YP_023371.1| - 1.8e-13 50.9 0.0 2.6e-13 50.4 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein Cas_Cas4 PF01930.17 gi|48477665|ref|YP_023371.1| - 0.0085 16.2 1.0 0.53 10.4 0.9 2.2 1 1 1 2 2 2 1 Domain of unknown function DUF83 EndIII_4Fe-2S PF10576.9 gi|48477665|ref|YP_023371.1| - 0.016 15.6 4.4 0.016 15.6 4.4 1.6 2 0 0 2 2 2 0 Iron-sulfur binding domain of endonuclease III HHH PF00633.23 gi|48477665|ref|YP_023371.1| - 0.017 15.0 0.0 0.034 14.0 0.0 1.5 1 0 0 1 1 1 0 Helix-hairpin-helix motif TFA2_Winged_2 PF18121.1 gi|48477665|ref|YP_023371.1| - 0.15 11.8 0.0 0.32 10.7 0.0 1.6 1 0 0 1 1 1 0 TFA2 Winged helix domain 2 tRNA-synt_2b PF00587.25 gi|48477666|ref|YP_023372.1| - 3.1e-31 108.7 0.0 6.1e-31 107.8 0.0 1.5 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.20 gi|48477666|ref|YP_023372.1| - 1.9e-16 60.0 1.2 4.1e-16 58.9 1.2 1.6 1 0 0 1 1 1 1 Anticodon binding domain tRNA_SAD PF07973.14 gi|48477666|ref|YP_023372.1| - 1.5e-14 53.8 0.0 3.5e-14 52.6 0.0 1.7 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain Zn-ribbon_8 PF09723.10 gi|48477666|ref|YP_023372.1| - 6e-06 26.3 0.4 1.6e-05 24.9 0.4 1.7 1 0 0 1 1 1 1 Zinc ribbon domain HypA PF01155.19 gi|48477666|ref|YP_023372.1| - 0.0037 17.3 0.0 0.0074 16.3 0.0 1.4 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA TF_Zn_Ribbon PF08271.12 gi|48477666|ref|YP_023372.1| - 0.039 13.5 0.5 5.6 6.6 0.0 2.5 2 0 0 2 2 2 0 TFIIB zinc-binding zf-LSD1 PF06943.12 gi|48477666|ref|YP_023372.1| - 0.1 12.5 1.0 0.16 11.9 1.0 1.3 1 0 0 1 1 1 0 LSD1 zinc finger TFIIS_C PF01096.18 gi|48477666|ref|YP_023372.1| - 0.44 10.5 1.4 11 5.9 0.1 2.5 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Ribosomal_S27e PF01667.17 gi|48477666|ref|YP_023372.1| - 0.51 10.1 2.7 5.8 6.7 0.2 2.4 2 0 0 2 2 2 0 Ribosomal protein S27 zinc_ribbon_4 PF13717.6 gi|48477666|ref|YP_023372.1| - 1.4 8.9 6.2 12 5.9 0.4 2.7 1 1 0 2 2 2 0 zinc-ribbon domain HTH_5 PF01022.20 gi|48477667|ref|YP_023373.1| - 0.0003 20.6 0.0 0.00047 20.0 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Mga PF05043.13 gi|48477667|ref|YP_023373.1| - 0.0003 21.3 0.2 0.00048 20.7 0.2 1.3 1 0 0 1 1 1 1 Mga helix-turn-helix domain HTH_11 PF08279.12 gi|48477667|ref|YP_023373.1| - 0.00075 19.4 0.0 0.0015 18.4 0.0 1.5 1 0 0 1 1 1 1 HTH domain TrmB PF01978.19 gi|48477667|ref|YP_023373.1| - 0.0011 18.8 0.1 0.002 18.0 0.1 1.5 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB FUR PF01475.19 gi|48477667|ref|YP_023373.1| - 0.0017 18.5 0.0 0.0028 17.8 0.0 1.3 1 0 0 1 1 1 1 Ferric uptake regulator family HTH_Crp_2 PF13545.6 gi|48477667|ref|YP_023373.1| - 0.0019 18.2 0.1 0.0031 17.4 0.1 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_20 PF12840.7 gi|48477667|ref|YP_023373.1| - 0.0073 16.3 0.0 0.011 15.8 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_43 PF09904.9 gi|48477667|ref|YP_023373.1| - 0.0095 15.9 0.0 0.014 15.3 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn helix HTH_17 PF12728.7 gi|48477667|ref|YP_023373.1| - 0.11 12.7 0.0 0.19 11.9 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain PadR PF03551.14 gi|48477667|ref|YP_023373.1| - 0.11 12.5 0.2 0.18 11.8 0.2 1.3 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family HTH_22 PF13309.6 gi|48477667|ref|YP_023373.1| - 0.12 12.4 0.2 0.36 10.9 0.1 1.8 2 0 0 2 2 2 0 HTH domain DHquinase_I PF01487.15 gi|48477668|ref|YP_023374.1| - 3e-09 37.5 0.0 4.5e-07 30.3 0.0 2.0 1 1 0 1 1 1 1 Type I 3-dehydroquinase DUF1510 PF07423.11 gi|48477668|ref|YP_023374.1| - 0.16 12.2 0.0 0.27 11.4 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1510) MarC PF01914.17 gi|48477669|ref|YP_023375.1| - 3.3e-53 180.1 17.9 3.8e-53 179.9 17.9 1.0 1 0 0 1 1 1 1 MarC family integral membrane protein EMP70 PF02990.16 gi|48477669|ref|YP_023375.1| - 0.17 10.5 3.6 0.26 9.9 3.6 1.3 1 0 0 1 1 1 0 Endomembrane protein 70 TNFR_16_TM PF18422.1 gi|48477669|ref|YP_023375.1| - 5.3 7.1 8.9 0.6 10.1 2.3 2.4 2 0 0 2 2 2 0 Tumor necrosis factor receptor member 16 trans-membrane domain DUF2976 PF11190.8 gi|48477669|ref|YP_023375.1| - 8.8 6.2 10.4 14 5.6 0.2 3.3 3 0 0 3 3 3 0 Protein of unknown function (DUF2976) Glyco_hydro_15 PF00723.21 gi|48477670|ref|YP_023376.1| - 1.2e-54 185.8 0.0 2.9e-52 178.0 0.0 2.0 1 1 1 2 2 2 2 Glycosyl hydrolases family 15 DHQ_synthase PF01761.20 gi|48477671|ref|YP_023377.1| - 2.5e-76 256.3 0.1 2.9e-76 256.1 0.1 1.0 1 0 0 1 1 1 1 3-dehydroquinate synthase Fe-ADH_2 PF13685.6 gi|48477671|ref|YP_023377.1| - 0.00045 20.0 0.4 0.078 12.7 0.0 2.2 2 0 0 2 2 2 2 Iron-containing alcohol dehydrogenase Adeno_IVa2 PF02456.15 gi|48477671|ref|YP_023377.1| - 0.007 15.2 0.2 0.011 14.5 0.2 1.2 1 0 0 1 1 1 1 Adenovirus IVa2 protein Methyltransf_20 PF12147.8 gi|48477671|ref|YP_023377.1| - 0.078 12.1 0.1 0.17 11.0 0.0 1.5 1 1 1 2 2 2 0 Putative methyltransferase Fe-ADH PF00465.19 gi|48477671|ref|YP_023377.1| - 0.21 10.3 0.1 2.7 6.7 0.1 2.1 2 0 0 2 2 2 0 Iron-containing alcohol dehydrogenase Shikimate_dh_N PF08501.11 gi|48477672|ref|YP_023378.1| - 6.2e-17 61.6 0.0 2.1e-16 59.9 0.0 1.8 2 0 0 2 2 2 1 Shikimate dehydrogenase substrate binding domain 2-Hacid_dh_C PF02826.19 gi|48477672|ref|YP_023378.1| - 0.0038 16.6 0.0 0.0088 15.4 0.0 1.5 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain PglD_N PF17836.1 gi|48477672|ref|YP_023378.1| - 0.047 14.3 0.3 0.26 12.0 0.0 2.3 3 0 0 3 3 3 0 PglD N-terminal domain ATS3 PF06232.11 gi|48477672|ref|YP_023378.1| - 0.099 12.6 0.1 0.46 10.4 0.0 1.9 2 0 0 2 2 2 0 Embryo-specific protein 3, (ATS3) GHMP_kinases_N PF00288.26 gi|48477673|ref|YP_023379.1| - 9.2e-08 32.2 0.0 1.7e-07 31.3 0.0 1.5 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|48477673|ref|YP_023379.1| - 0.0076 16.6 0.0 0.017 15.5 0.0 1.7 1 0 0 1 1 1 1 GHMP kinases C terminal EPSP_synthase PF00275.20 gi|48477674|ref|YP_023380.1| - 2.7e-55 187.8 0.0 3.4e-55 187.5 0.0 1.0 1 0 0 1 1 1 1 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) tRNA-synt_1d PF00750.19 gi|48477675|ref|YP_023381.1| - 7.1e-25 87.7 4.5 1e-24 87.1 4.5 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (R) DALR_1 PF05746.15 gi|48477675|ref|YP_023381.1| - 1.6e-18 67.0 0.0 6.2e-18 65.1 0.0 2.1 1 0 0 1 1 1 1 DALR anticodon binding domain tRNA-synt_1f PF01921.18 gi|48477675|ref|YP_023381.1| - 5.9e-07 28.7 1.1 0.0076 15.2 0.1 3.0 2 1 1 3 3 3 2 tRNA synthetases class I (K) Arg_tRNA_synt_N PF03485.16 gi|48477675|ref|YP_023381.1| - 0.0048 17.4 1.3 0.0098 16.5 0.1 2.2 2 0 0 2 2 2 1 Arginyl tRNA synthetase N terminal domain NP1-WLL PF11733.8 gi|48477675|ref|YP_023381.1| - 0.0074 16.1 0.0 0.012 15.4 0.0 1.2 1 0 0 1 1 1 1 Non-capsid protein NP1 tRNA-synt_1e PF01406.19 gi|48477675|ref|YP_023381.1| - 0.012 14.9 0.4 1.9 7.8 0.1 2.3 2 0 0 2 2 2 0 tRNA synthetases class I (C) catalytic domain Ribosomal_S8 PF00410.19 gi|48477675|ref|YP_023381.1| - 0.37 10.7 0.0 0.37 10.7 0.0 3.0 3 1 0 3 3 3 0 Ribosomal protein S8 CARDB PF07705.11 gi|48477676|ref|YP_023382.1| - 3.1e-09 37.0 0.0 3.1e-09 37.0 0.0 3.5 3 1 0 3 3 3 1 CARDB Big_3 PF07523.12 gi|48477676|ref|YP_023382.1| - 0.04 14.2 0.1 0.17 12.2 0.2 2.1 2 0 0 2 2 2 0 Bacterial Ig-like domain (group 3) RGI_lyase PF18370.1 gi|48477676|ref|YP_023382.1| - 1.8 9.0 8.5 3.1 8.2 0.1 4.4 4 2 1 5 5 5 0 Rhamnogalacturonan I lyases beta-sheet domain RtcB PF01139.17 gi|48477677|ref|YP_023383.1| - 1e-148 496.0 0.1 1.2e-148 495.8 0.1 1.0 1 0 0 1 1 1 1 tRNA-splicing ligase RtcB AMP-binding PF00501.28 gi|48477678|ref|YP_023384.1| - 8.7e-08 31.2 0.0 8.7e-07 27.9 0.0 1.9 2 0 0 2 2 2 2 AMP-binding enzyme Carb_kinase PF01256.17 gi|48477679|ref|YP_023385.1| - 6.2e-43 147.0 0.0 9.1e-43 146.5 0.0 1.2 1 0 0 1 1 1 1 Carbohydrate kinase YjeF_N PF03853.15 gi|48477679|ref|YP_023385.1| - 4.4e-30 104.8 0.0 6.4e-30 104.3 0.0 1.3 1 0 0 1 1 1 1 YjeF-related protein N-terminus HK PF02110.15 gi|48477679|ref|YP_023385.1| - 1e-05 25.1 0.0 2.2e-05 24.0 0.0 1.5 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family Phos_pyr_kin PF08543.12 gi|48477679|ref|YP_023385.1| - 0.014 14.8 0.0 0.022 14.1 0.0 1.2 1 0 0 1 1 1 0 Phosphomethylpyrimidine kinase Cyt_bd_oxida_I PF01654.17 gi|48477681|ref|YP_023387.1| - 1.5e-95 320.3 28.1 1.9e-95 320.0 28.1 1.0 1 0 0 1 1 1 1 Cytochrome bd terminal oxidase subunit I 7TM_GPCR_Srb PF02175.16 gi|48477681|ref|YP_023387.1| - 0.0024 17.7 0.7 0.0024 17.7 0.7 2.9 3 0 0 3 3 3 1 Serpentine type 7TM GPCR chemoreceptor Srb Sugar_tr PF00083.24 gi|48477682|ref|YP_023388.1| - 1.6e-42 146.0 22.9 4.7e-42 144.4 22.9 1.9 1 1 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.16 gi|48477682|ref|YP_023388.1| - 1.9e-37 129.0 42.1 6.2e-26 91.1 20.0 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily DAD PF02109.16 gi|48477682|ref|YP_023388.1| - 0.03 14.6 1.6 0.04 14.2 0.1 2.0 2 0 0 2 2 2 0 DAD family SHMT PF00464.19 gi|48477683|ref|YP_023389.1| - 1.4e-67 228.1 0.0 1.7e-67 227.8 0.0 1.0 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Aminotran_1_2 PF00155.21 gi|48477683|ref|YP_023389.1| - 1.9e-07 30.6 0.0 8.1e-07 28.5 0.0 1.8 1 1 0 1 1 1 1 Aminotransferase class I and II SelA PF03841.13 gi|48477683|ref|YP_023389.1| - 0.00044 19.3 0.0 0.00066 18.8 0.0 1.3 1 0 0 1 1 1 1 L-seryl-tRNA selenium transferase Beta_elim_lyase PF01212.21 gi|48477683|ref|YP_023389.1| - 0.018 14.3 0.0 0.054 12.8 0.0 1.7 1 1 0 1 1 1 0 Beta-eliminating lyase tRNA_deacylase PF04414.12 gi|48477684|ref|YP_023390.1| - 1e-58 198.2 0.0 1.4e-58 197.8 0.0 1.1 1 0 0 1 1 1 1 D-aminoacyl-tRNA deacylase Spermine_synth PF01564.17 gi|48477685|ref|YP_023391.1| - 5.4e-52 175.9 0.0 8.1e-52 175.4 0.0 1.2 1 0 0 1 1 1 1 Spermine/spermidine synthase domain Spermine_synt_N PF17284.2 gi|48477685|ref|YP_023391.1| - 8.7e-15 54.4 0.1 1.5e-14 53.6 0.1 1.4 1 0 0 1 1 1 1 Spermidine synthase tetramerisation domain Methyltransf_31 PF13847.6 gi|48477685|ref|YP_023391.1| - 8.8e-06 25.6 0.0 1.3e-05 25.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|48477685|ref|YP_023391.1| - 0.00068 20.2 0.0 0.0012 19.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_24 PF13578.6 gi|48477685|ref|YP_023391.1| - 0.0053 17.8 0.0 0.011 16.7 0.0 1.5 2 0 0 2 2 2 1 Methyltransferase domain DUF3198 PF11433.8 gi|48477686|ref|YP_023392.1| - 4e-24 84.2 5.0 5.8e-24 83.7 5.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF3198) PIG-Y PF15159.6 gi|48477686|ref|YP_023392.1| - 0.14 13.1 5.4 0.24 12.3 5.4 1.3 1 0 0 1 1 1 0 Phosphatidylinositol N-acetylglucosaminyltransferase subunit Y UPF0114 PF03350.16 gi|48477686|ref|YP_023392.1| - 0.31 11.3 4.8 0.64 10.2 4.8 1.5 1 1 0 1 1 1 0 Uncharacterized protein family, UPF0114 DUF5611 PF18446.1 gi|48477687|ref|YP_023393.1| - 1.1e-24 87.2 2.2 1.3e-24 87.0 2.2 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF5611) DUF5496 PF17600.2 gi|48477687|ref|YP_023393.1| - 0.073 13.1 0.8 0.097 12.7 0.5 1.4 1 1 0 1 1 1 0 Family of unknown function (DUF5496) AP_endonuc_2 PF01261.24 gi|48477688|ref|YP_023394.1| - 6.1e-10 38.9 0.0 8.8e-10 38.4 0.0 1.2 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel Toprim_4 PF13662.6 gi|48477689|ref|YP_023395.1| - 1.8e-11 44.4 0.3 6.8e-11 42.5 0.1 2.1 2 0 0 2 2 2 1 Toprim domain Toprim_2 PF13155.6 gi|48477689|ref|YP_023395.1| - 3.3e-06 27.4 0.0 8.5e-06 26.1 0.0 1.7 1 0 0 1 1 1 1 Toprim-like Toprim PF01751.22 gi|48477689|ref|YP_023395.1| - 0.0024 18.1 0.1 0.013 15.7 0.0 2.3 2 0 0 2 2 2 1 Toprim domain Mg_chelatase PF01078.21 gi|48477690|ref|YP_023396.1| - 1.2e-14 54.2 0.0 5.8e-09 35.6 0.0 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_32 PF13654.6 gi|48477690|ref|YP_023396.1| - 2.5e-12 46.4 0.0 6e-06 25.3 0.1 3.1 3 0 0 3 3 3 3 AAA domain Sigma54_activat PF00158.26 gi|48477690|ref|YP_023396.1| - 1.2e-10 41.3 0.0 4.3e-05 23.3 0.0 2.4 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_5 PF07728.14 gi|48477690|ref|YP_023396.1| - 4e-08 33.4 0.0 0.00022 21.2 0.0 2.6 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) RuvB_N PF05496.12 gi|48477690|ref|YP_023396.1| - 2.2e-07 30.7 0.0 0.025 14.3 0.0 2.4 2 0 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain MCM PF00493.23 gi|48477690|ref|YP_023396.1| - 3.2e-06 26.4 0.0 0.013 14.6 0.0 2.2 2 0 0 2 2 2 2 MCM P-loop domain AAA PF00004.29 gi|48477690|ref|YP_023396.1| - 6.2e-06 26.7 0.0 0.0059 17.0 0.0 2.7 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|48477690|ref|YP_023396.1| - 0.00017 21.9 0.0 0.012 15.9 0.0 2.7 3 0 0 3 3 2 1 AAA domain IstB_IS21 PF01695.17 gi|48477690|ref|YP_023396.1| - 0.00082 19.2 0.0 0.0016 18.2 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein DZR PF12773.7 gi|48477690|ref|YP_023396.1| - 0.00093 19.2 0.6 0.0017 18.4 0.6 1.3 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|48477690|ref|YP_023396.1| - 0.0015 17.9 5.8 0.0028 17.0 5.8 1.4 1 0 0 1 1 1 1 zinc-ribbon domain DUF35_N PF12172.8 gi|48477690|ref|YP_023396.1| - 0.0016 18.3 2.4 0.0028 17.5 2.4 1.4 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) AAA_16 PF13191.6 gi|48477690|ref|YP_023396.1| - 0.0044 17.4 0.0 0.0082 16.5 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain AAA_7 PF12775.7 gi|48477690|ref|YP_023396.1| - 0.007 15.9 0.0 0.014 14.9 0.0 1.5 1 0 0 1 1 1 1 P-loop containing dynein motor region TniB PF05621.11 gi|48477690|ref|YP_023396.1| - 0.01 15.3 0.0 0.062 12.7 0.0 2.2 3 0 0 3 3 2 0 Bacterial TniB protein AAA_14 PF13173.6 gi|48477690|ref|YP_023396.1| - 0.012 15.6 0.0 5.2 7.1 0.0 3.3 3 1 1 4 4 3 0 AAA domain Sigma54_activ_2 PF14532.6 gi|48477690|ref|YP_023396.1| - 0.019 15.1 0.0 0.6 10.2 0.0 2.2 2 0 0 2 2 2 0 Sigma-54 interaction domain zinc_ribbon_2 PF13240.6 gi|48477690|ref|YP_023396.1| - 0.019 14.6 5.9 0.035 13.8 5.9 1.4 1 0 0 1 1 1 0 zinc-ribbon domain AAA_19 PF13245.6 gi|48477690|ref|YP_023396.1| - 0.023 15.1 0.0 2.9 8.2 0.0 2.4 2 0 0 2 2 2 0 AAA domain Rad17 PF03215.15 gi|48477690|ref|YP_023396.1| - 0.023 14.6 0.0 0.1 12.5 0.0 1.9 2 0 0 2 2 2 0 Rad17 P-loop domain T2SSE PF00437.20 gi|48477690|ref|YP_023396.1| - 0.029 13.4 0.0 0.05 12.7 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein ABC_tran PF00005.27 gi|48477690|ref|YP_023396.1| - 0.029 14.9 0.0 0.062 13.8 0.0 1.7 1 0 0 1 1 1 0 ABC transporter zinc_ribbon_15 PF17032.5 gi|48477690|ref|YP_023396.1| - 0.053 14.3 0.3 0.099 13.4 0.3 1.4 1 0 0 1 1 1 0 zinc-ribbon family AAA_29 PF13555.6 gi|48477690|ref|YP_023396.1| - 0.064 13.0 0.0 0.17 11.7 0.0 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain SMC_N PF02463.19 gi|48477690|ref|YP_023396.1| - 0.07 12.6 0.0 0.18 11.2 0.0 1.6 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain Zn_Tnp_IS91 PF14319.6 gi|48477690|ref|YP_023396.1| - 0.081 13.0 0.1 0.16 12.0 0.1 1.4 1 0 0 1 1 1 0 Transposase zinc-binding domain zf-IS66 PF13005.7 gi|48477690|ref|YP_023396.1| - 0.1 13.1 1.1 29 5.2 0.0 2.8 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 HypA PF01155.19 gi|48477690|ref|YP_023396.1| - 0.15 12.1 0.2 0.33 11.0 0.2 1.5 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-RanBP PF00641.18 gi|48477690|ref|YP_023396.1| - 0.34 10.3 2.4 0.59 9.5 2.4 1.3 1 0 0 1 1 1 0 Zn-finger in Ran binding protein and others zf-ISL3 PF14690.6 gi|48477690|ref|YP_023396.1| - 1.2 9.8 5.1 8.7 7.1 0.1 3.3 3 0 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Zn-ribbon_8 PF09723.10 gi|48477690|ref|YP_023396.1| - 1.5 9.0 5.1 3.8 7.7 5.1 1.7 1 1 0 1 1 1 0 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|48477690|ref|YP_023396.1| - 3.6 7.6 7.0 5.9 6.9 0.2 2.3 1 1 1 2 2 2 0 Transposase zinc-ribbon domain HTH_22 PF13309.6 gi|48477691|ref|YP_023397.1| - 0.0016 18.5 0.2 0.13 12.4 0.1 2.5 2 0 0 2 2 2 1 HTH domain IF2_N PF04760.15 gi|48477691|ref|YP_023397.1| - 0.0058 16.4 2.9 1.9 8.4 0.1 3.5 3 0 0 3 3 3 1 Translation initiation factor IF-2, N-terminal region Mga PF05043.13 gi|48477691|ref|YP_023397.1| - 0.011 16.3 6.9 0.38 11.4 1.7 2.4 1 1 1 2 2 2 0 Mga helix-turn-helix domain HTH_7 PF02796.15 gi|48477691|ref|YP_023397.1| - 0.027 14.5 0.1 0.15 12.2 0.1 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase HTH_30 PF13556.6 gi|48477691|ref|YP_023397.1| - 0.045 13.5 0.0 0.083 12.7 0.0 1.5 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain HTH_23 PF13384.6 gi|48477691|ref|YP_023397.1| - 0.048 13.5 0.0 0.13 12.1 0.0 1.8 1 0 0 1 1 1 0 Homeodomain-like domain HTH_11 PF08279.12 gi|48477691|ref|YP_023397.1| - 0.059 13.3 0.1 0.17 11.8 0.1 1.8 1 0 0 1 1 1 0 HTH domain TetR_C_8 PF14278.6 gi|48477691|ref|YP_023397.1| - 0.065 13.3 0.6 0.15 12.2 0.1 1.9 2 1 0 2 2 2 0 Transcriptional regulator C-terminal region DUF4430 PF14478.6 gi|48477691|ref|YP_023397.1| - 0.11 13.1 0.3 0.35 11.5 0.1 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4430) NUMOD1 PF07453.13 gi|48477691|ref|YP_023397.1| - 0.23 11.7 0.2 0.23 11.7 0.2 3.0 3 0 0 3 3 3 0 NUMOD1 domain ATP_bind_1 PF03029.17 gi|48477692|ref|YP_023398.1| - 2.3e-56 191.3 0.0 2.5e-56 191.2 0.0 1.0 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein MMR_HSR1_Xtn PF16897.5 gi|48477692|ref|YP_023398.1| - 3e-05 24.0 0.9 0.00073 19.5 0.0 2.9 3 1 1 4 4 4 1 C-terminal region of MMR_HSR1 domain CLP1_P PF16575.5 gi|48477692|ref|YP_023398.1| - 0.00016 21.5 0.0 0.0012 18.7 0.0 2.1 1 1 0 1 1 1 1 mRNA cleavage and polyadenylation factor CLP1 P-loop AAA_24 PF13479.6 gi|48477692|ref|YP_023398.1| - 0.0023 17.7 0.0 0.0048 16.7 0.0 1.5 1 0 0 1 1 1 1 AAA domain MeaB PF03308.16 gi|48477692|ref|YP_023398.1| - 0.021 13.8 0.0 0.042 12.8 0.0 1.4 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_22 PF13401.6 gi|48477692|ref|YP_023398.1| - 0.025 14.8 0.0 0.053 13.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|48477692|ref|YP_023398.1| - 0.033 14.1 0.1 6.6 6.6 0.0 2.8 3 0 0 3 3 3 0 RsgA GTPase NOG1 PF06858.14 gi|48477692|ref|YP_023398.1| - 0.036 13.8 0.1 0.11 12.3 0.1 1.8 1 1 0 1 1 1 0 Nucleolar GTP-binding protein 1 (NOG1) ArsA_ATPase PF02374.15 gi|48477692|ref|YP_023398.1| - 0.038 13.2 0.0 0.12 11.5 0.0 1.6 1 1 0 1 1 1 0 Anion-transporting ATPase AAA_29 PF13555.6 gi|48477692|ref|YP_023398.1| - 0.1 12.4 0.1 0.18 11.6 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|48477692|ref|YP_023398.1| - 0.12 12.8 0.0 0.27 11.6 0.0 1.6 2 0 0 2 2 2 0 AAA ATPase domain GTP_EFTU PF00009.27 gi|48477692|ref|YP_023398.1| - 0.13 11.7 0.0 0.8 9.2 0.0 2.3 2 1 0 2 2 2 0 Elongation factor Tu GTP binding domain AAA_30 PF13604.6 gi|48477692|ref|YP_023398.1| - 0.14 11.8 0.0 0.22 11.2 0.0 1.2 1 0 0 1 1 1 0 AAA domain CbiA PF01656.23 gi|48477692|ref|YP_023398.1| - 0.16 12.1 0.0 0.21 11.7 0.0 1.3 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_18 PF13238.6 gi|48477692|ref|YP_023398.1| - 0.18 12.3 0.6 0.44 11.1 0.1 2.0 2 1 0 2 2 2 0 AAA domain IstB_IS21 PF01695.17 gi|48477692|ref|YP_023398.1| - 0.24 11.1 0.0 0.37 10.5 0.0 1.2 1 0 0 1 1 1 0 IstB-like ATP binding protein Isochorismatase PF00857.20 gi|48477693|ref|YP_023399.1| - 6.5e-29 101.3 0.0 7.3e-29 101.2 0.0 1.0 1 0 0 1 1 1 1 Isochorismatase family Peptidase_S78_2 PF14550.6 gi|48477694|ref|YP_023400.1| - 0.08 13.0 0.2 0.14 12.3 0.2 1.3 1 0 0 1 1 1 0 Putative phage serine protease XkdF LigT_PEase PF02834.16 gi|48477695|ref|YP_023401.1| - 1.7e-18 66.5 0.0 2.5e-13 50.0 0.0 2.2 2 0 0 2 2 2 2 LigT like Phosphoesterase 2_5_RNA_ligase2 PF13563.6 gi|48477695|ref|YP_023401.1| - 1.1e-09 38.4 0.0 1.3e-09 38.1 0.0 1.1 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily GCV_H PF01597.19 gi|48477696|ref|YP_023402.1| - 4e-38 130.1 0.4 4.3e-38 129.9 0.4 1.0 1 0 0 1 1 1 1 Glycine cleavage H-protein Biotin_lipoyl PF00364.22 gi|48477696|ref|YP_023402.1| - 0.0002 21.1 0.0 0.00032 20.5 0.0 1.3 1 0 0 1 1 1 1 Biotin-requiring enzyme FtsJ PF01728.19 gi|48477697|ref|YP_023403.1| - 5.7e-44 150.3 0.0 6.4e-44 150.2 0.0 1.0 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltr_RsmB-F PF01189.17 gi|48477697|ref|YP_023403.1| - 0.00039 20.1 0.0 0.00072 19.3 0.0 1.4 1 1 0 1 1 1 1 16S rRNA methyltransferase RsmB/F Methyltransf_23 PF13489.6 gi|48477697|ref|YP_023403.1| - 0.0089 15.9 0.0 0.013 15.4 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain SBDS_C PF09377.10 gi|48477698|ref|YP_023404.1| - 1.4e-20 73.5 0.4 2.2e-20 72.8 0.4 1.3 1 0 0 1 1 1 1 SBDS protein C-terminal domain SBDS PF01172.18 gi|48477698|ref|YP_023404.1| - 2.2e-20 72.5 1.6 3.8e-20 71.7 0.2 2.0 2 0 0 2 2 2 1 Shwachman-Bodian-Diamond syndrome (SBDS) protein TonB_2 PF13103.6 gi|48477698|ref|YP_023404.1| - 0.28 11.5 1.4 2.5 8.4 0.1 2.6 2 1 0 2 2 2 0 TonB C terminal DUF3349 PF11829.8 gi|48477698|ref|YP_023404.1| - 0.88 10.4 3.1 2 9.2 2.1 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF3349) Exo_endo_phos PF03372.23 gi|48477699|ref|YP_023405.1| - 1.2e-18 67.5 0.0 1.7e-18 67.0 0.0 1.2 1 0 0 1 1 1 1 Endonuclease/Exonuclease/phosphatase family Exo_endo_phos_2 PF14529.6 gi|48477699|ref|YP_023405.1| - 4.9e-06 26.4 0.4 1.8e-05 24.6 0.4 2.0 1 1 0 1 1 1 1 Endonuclease-reverse transcriptase Acid_PPase PF12689.7 gi|48477700|ref|YP_023406.1| - 6.2e-05 22.9 0.1 0.0001 22.2 0.1 1.5 1 1 0 1 1 1 1 Acid Phosphatase HAD_2 PF13419.6 gi|48477700|ref|YP_023406.1| - 0.0064 16.6 0.1 0.026 14.6 0.0 1.8 1 1 1 2 2 2 1 Haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|48477700|ref|YP_023406.1| - 0.087 13.2 0.2 0.84 10.0 0.0 2.0 1 1 0 2 2 2 0 haloacid dehalogenase-like hydrolase Peripla_BP_2 PF01497.18 gi|48477701|ref|YP_023407.1| - 3.6e-45 154.4 0.0 4.3e-45 154.1 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein EamA PF00892.20 gi|48477702|ref|YP_023408.1| - 1.1e-32 113.1 42.3 4.9e-19 68.9 17.9 2.0 2 0 0 2 2 2 2 EamA-like transporter family AMP-binding PF00501.28 gi|48477703|ref|YP_023409.1| - 3.3e-53 180.8 0.0 3.9e-53 180.6 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|48477703|ref|YP_023409.1| - 6.9e-20 71.8 0.1 1.2e-19 71.0 0.1 1.4 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain CoA_transf_3 PF02515.17 gi|48477704|ref|YP_023410.1| - 4.4e-41 141.2 0.0 1.1e-33 116.9 0.1 2.8 2 1 0 2 2 2 2 CoA-transferase family III Peptidase_M19 PF01244.21 gi|48477705|ref|YP_023411.1| - 5.6e-61 206.5 0.1 7.1e-61 206.1 0.1 1.1 1 0 0 1 1 1 1 Membrane dipeptidase (Peptidase family M19) MMPL PF03176.15 gi|48477706|ref|YP_023412.1| - 9.1e-58 195.7 10.4 2e-33 115.7 2.5 2.2 2 0 0 2 2 2 2 MMPL family Sterol-sensing PF12349.8 gi|48477706|ref|YP_023412.1| - 5.9e-06 26.2 9.7 5.9e-06 26.2 9.7 2.9 2 0 0 2 2 2 1 Sterol-sensing domain of SREBP cleavage-activation DUF2004 PF09406.10 gi|48477707|ref|YP_023413.1| - 1.7e-21 76.5 2.4 2.1e-21 76.3 2.4 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2004) LIN52 PF10044.9 gi|48477707|ref|YP_023413.1| - 0.064 14.0 0.9 3.4 8.4 0.0 2.1 1 1 0 2 2 2 0 Retinal tissue protein GDPD PF03009.17 gi|48477708|ref|YP_023414.1| - 3.9e-33 115.3 0.2 5.3e-33 114.8 0.2 1.1 1 0 0 1 1 1 1 Glycerophosphoryl diester phosphodiesterase family GDPD_2 PF13653.6 gi|48477708|ref|YP_023414.1| - 0.00016 22.0 0.0 0.0044 17.4 0.0 2.3 2 0 0 2 2 2 1 Glycerophosphoryl diester phosphodiesterase family PI-PLC-X PF00388.19 gi|48477708|ref|YP_023414.1| - 0.056 13.0 0.0 0.13 11.9 0.0 1.5 2 0 0 2 2 2 0 Phosphatidylinositol-specific phospholipase C, X domain Pro_isomerase PF00160.21 gi|48477709|ref|YP_023415.1| - 9.4e-54 182.0 0.7 1e-53 181.8 0.7 1.0 1 0 0 1 1 1 1 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD DUF2207 PF09972.9 gi|48477710|ref|YP_023416.1| - 1.5 7.5 7.8 1.9 7.1 7.8 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) FtsX PF02687.21 gi|48477710|ref|YP_023416.1| - 7.8 7.0 20.8 3.6 8.1 5.5 2.1 1 1 1 2 2 2 0 FtsX-like permease family Glu_dehyd_C PF16912.5 gi|48477711|ref|YP_023417.1| - 2.9e-18 66.1 0.0 4.8e-18 65.4 0.0 1.3 1 0 0 1 1 1 1 Glucose dehydrogenase C-terminus ADH_N PF08240.12 gi|48477711|ref|YP_023417.1| - 4.1e-18 65.3 0.0 7.5e-18 64.4 0.0 1.4 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain 2-Hacid_dh_C PF02826.19 gi|48477711|ref|YP_023417.1| - 0.0051 16.2 0.0 0.0086 15.4 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FAD_binding_3 PF01494.19 gi|48477711|ref|YP_023417.1| - 0.024 13.9 0.0 0.039 13.2 0.0 1.2 1 0 0 1 1 1 0 FAD binding domain Shikimate_DH PF01488.20 gi|48477711|ref|YP_023417.1| - 0.055 13.5 0.0 0.12 12.4 0.0 1.5 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase Ribosomal_L3 PF00297.22 gi|48477712|ref|YP_023418.1| - 4.9e-76 256.1 2.5 2.7e-74 250.4 2.5 2.0 1 1 0 1 1 1 1 Ribosomal protein L3 Ribosomal_L4 PF00573.22 gi|48477713|ref|YP_023419.1| - 2.3e-32 112.3 0.0 2.6e-32 112.1 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L4/L1 family Ribosomal_L23 PF00276.20 gi|48477714|ref|YP_023420.1| - 3.1e-17 62.7 10.1 3.9e-16 59.2 10.1 1.9 1 1 0 1 1 1 1 Ribosomal protein L23 DUF2551 PF10826.8 gi|48477714|ref|YP_023420.1| - 0.085 13.1 0.2 0.11 12.7 0.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2551) Ribosomal_L2_C PF03947.18 gi|48477715|ref|YP_023421.1| - 8.5e-40 135.9 0.8 1.2e-39 135.3 0.8 1.2 1 0 0 1 1 1 1 Ribosomal Proteins L2, C-terminal domain Ribosomal_L2 PF00181.23 gi|48477715|ref|YP_023421.1| - 2.7e-07 30.4 0.1 9e-07 28.8 0.1 1.9 1 0 0 1 1 1 1 Ribosomal Proteins L2, RNA binding domain Ribosomal_S19 PF00203.21 gi|48477716|ref|YP_023422.1| - 1.9e-26 91.8 1.4 1.9e-26 91.7 0.1 1.6 2 0 0 2 2 2 1 Ribosomal protein S19 Ribosomal_L22 PF00237.19 gi|48477717|ref|YP_023423.1| - 5.2e-23 81.2 0.0 6.1e-23 81.0 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L22p/L17e Ribosomal_S3_C PF00189.20 gi|48477718|ref|YP_023424.1| - 8.8e-20 71.0 0.4 1.6e-19 70.2 0.4 1.4 1 0 0 1 1 1 1 Ribosomal protein S3, C-terminal domain KH_2 PF07650.17 gi|48477718|ref|YP_023424.1| - 1.5e-12 47.1 0.2 3.8e-12 45.9 0.0 1.8 2 0 0 2 2 2 1 KH domain Ribosomal_L29 PF00831.23 gi|48477719|ref|YP_023425.1| - 5.2e-19 68.0 0.3 6.2e-19 67.7 0.3 1.1 1 0 0 1 1 1 1 Ribosomal L29 protein SUI1 PF01253.22 gi|48477720|ref|YP_023426.1| - 2.4e-19 69.6 0.9 2.9e-19 69.4 0.9 1.1 1 0 0 1 1 1 1 Translation initiation factor SUI1 Ribosomal_S17 PF00366.20 gi|48477721|ref|YP_023427.1| - 2.9e-22 78.5 0.7 3.7e-22 78.2 0.7 1.1 1 0 0 1 1 1 1 Ribosomal protein S17 Ribosomal_S17_N PF16205.5 gi|48477721|ref|YP_023427.1| - 0.00099 19.4 0.6 0.0017 18.7 0.1 1.7 2 0 0 2 2 2 1 Ribosomal_S17 N-terminal zf-C3H1 PF10650.9 gi|48477721|ref|YP_023427.1| - 0.11 12.3 1.2 0.23 11.2 1.2 1.5 1 0 0 1 1 1 0 Putative zinc-finger domain Ribosomal_L14 PF00238.19 gi|48477722|ref|YP_023428.1| - 4.1e-34 117.3 0.1 4.8e-34 117.1 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L14p/L23e Ribosomal_L26 PF16906.5 gi|48477723|ref|YP_023429.1| - 2.9e-15 56.5 0.1 5.6e-15 55.6 0.1 1.4 1 0 0 1 1 1 1 Ribosomal proteins L26 eukaryotic, L24P archaeal KOW PF00467.29 gi|48477723|ref|YP_023429.1| - 0.00014 21.7 4.7 0.00024 20.9 4.7 1.5 1 0 0 1 1 1 1 KOW motif FAM196 PF15265.6 gi|48477723|ref|YP_023429.1| - 0.0082 15.7 0.9 0.0093 15.5 0.9 1.0 1 0 0 1 1 1 1 FAM196 family Ribosomal_S4e PF00900.20 gi|48477724|ref|YP_023430.1| - 5.2e-19 67.9 0.4 9.2e-19 67.1 0.4 1.4 1 0 0 1 1 1 1 Ribosomal family S4e RS4NT PF08071.12 gi|48477724|ref|YP_023430.1| - 3.4e-05 23.9 0.4 7e-05 22.9 0.4 1.5 1 0 0 1 1 1 1 RS4NT (NUC023) domain KOW PF00467.29 gi|48477724|ref|YP_023430.1| - 0.0013 18.7 0.0 0.0013 18.7 0.0 2.3 3 0 0 3 3 3 1 KOW motif Prot_ATP_ID_OB PF16450.5 gi|48477724|ref|YP_023430.1| - 0.071 13.1 0.5 18 5.4 0.1 2.7 2 0 0 2 2 2 0 Proteasomal ATPase OB C-terminal domain S4_2 PF13275.6 gi|48477724|ref|YP_023430.1| - 0.44 10.4 2.6 0.71 9.7 0.2 2.5 2 1 0 2 2 2 0 S4 domain Ribosomal_L5_C PF00673.21 gi|48477725|ref|YP_023431.1| - 1.5e-21 76.3 0.1 2.5e-21 75.7 0.1 1.4 1 0 0 1 1 1 1 ribosomal L5P family C-terminus Ribosomal_L5 PF00281.19 gi|48477725|ref|YP_023431.1| - 3.4e-18 65.7 0.1 7.2e-18 64.7 0.1 1.6 1 0 0 1 1 1 1 Ribosomal protein L5 A_thal_3526 PF09713.10 gi|48477725|ref|YP_023431.1| - 0.13 12.5 0.1 0.31 11.3 0.1 1.6 1 0 0 1 1 1 0 Plant protein 1589 of unknown function (A_thal_3526) Ribosomal_S14 PF00253.21 gi|161611251|ref|YP_023432.2| - 1e-12 47.6 6.6 1e-12 47.6 6.6 1.1 1 0 0 1 1 1 1 Ribosomal protein S14p/S29e NMD3 PF04981.13 gi|161611251|ref|YP_023432.2| - 0.025 14.0 0.9 0.027 13.9 0.9 1.0 1 0 0 1 1 1 0 NMD3 family Ribosomal_S8 PF00410.19 gi|48477727|ref|YP_023433.1| - 5e-27 94.4 0.4 5.8e-27 94.1 0.4 1.1 1 0 0 1 1 1 1 Ribosomal protein S8 Ribosomal_L6 PF00347.23 gi|48477728|ref|YP_023434.1| - 2.2e-17 63.5 2.1 1.2e-10 41.9 0.1 2.1 2 0 0 2 2 2 2 Ribosomal protein L6 DNA_pol3_a_NII PF11490.8 gi|48477728|ref|YP_023434.1| - 0.068 13.1 0.2 1.6 8.6 0.0 2.5 2 0 0 2 2 2 0 DNA polymerase III polC-type N-terminus II Ribosomal_L32e PF01655.18 gi|48477729|ref|YP_023435.1| - 7.5e-37 126.0 0.1 1.1e-36 125.6 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein L32 Ribosomal_L19e PF01280.20 gi|48477730|ref|YP_023436.1| - 7.2e-49 165.6 14.1 8.2e-49 165.4 14.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L19e DUF910 PF06014.11 gi|48477730|ref|YP_023436.1| - 0.089 12.8 0.2 0.42 10.7 0.0 2.0 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF910) Ribosomal_L5e PF17144.4 gi|48477731|ref|YP_023437.1| - 3.5e-12 46.6 7.9 4e-09 36.7 2.9 2.2 1 1 1 2 2 2 2 Ribosomal large subunit proteins 60S L5, and 50S L18 Ribosomal_L18p PF00861.22 gi|48477731|ref|YP_023437.1| - 0.00027 21.3 0.5 0.00045 20.6 0.5 1.4 1 0 0 1 1 1 1 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast TPR_11 PF13414.6 gi|48477731|ref|YP_023437.1| - 0.024 14.3 1.3 0.17 11.6 0.4 2.2 2 0 0 2 2 2 0 TPR repeat Lar_N PF09861.9 gi|48477731|ref|YP_023437.1| - 0.032 13.4 0.1 0.05 12.8 0.1 1.3 1 1 0 1 1 1 0 Lactate racemase N-terminal domain Ribosomal_S5 PF00333.20 gi|48477732|ref|YP_023438.1| - 6.8e-25 86.8 1.5 1.5e-24 85.8 1.5 1.6 1 0 0 1 1 1 1 Ribosomal protein S5, N-terminal domain Ribosomal_S5_C PF03719.15 gi|48477732|ref|YP_023438.1| - 4.1e-20 71.0 0.5 8.7e-20 70.0 0.2 1.7 2 0 0 2 2 2 1 Ribosomal protein S5, C-terminal domain Ribosomal_L30 PF00327.20 gi|48477733|ref|YP_023439.1| - 3.1e-13 49.4 0.1 6.9e-13 48.3 0.1 1.7 1 0 0 1 1 1 1 Ribosomal protein L30p/L7e Ribosomal_L27A PF00828.19 gi|48477734|ref|YP_023440.1| - 2e-14 54.4 0.3 3.1e-14 53.7 0.3 1.3 1 0 0 1 1 1 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A SecY PF00344.20 gi|48477735|ref|YP_023441.1| - 4e-69 233.2 17.8 4e-69 233.2 17.8 2.0 2 0 0 2 2 2 1 SecY translocase Plug_translocon PF10559.9 gi|48477735|ref|YP_023441.1| - 6.4e-11 41.9 0.5 3.9e-10 39.4 0.5 2.5 1 0 0 1 1 1 1 Plug domain of Sec61p Phage_holin_5_1 PF06946.11 gi|48477735|ref|YP_023441.1| - 0.04 14.3 0.5 0.19 12.1 0.1 2.4 2 0 0 2 2 2 0 Bacteriophage A118-like holin, Hol118 DUF4500 PF14937.6 gi|48477735|ref|YP_023441.1| - 0.17 11.9 0.1 0.52 10.4 0.1 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF4500) AAA_17 PF13207.6 gi|48477736|ref|YP_023442.1| - 7.8e-32 110.5 0.0 9.6e-32 110.3 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|48477736|ref|YP_023442.1| - 3.3e-10 40.6 0.1 7e-10 39.6 0.1 1.5 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|48477736|ref|YP_023442.1| - 2.8e-05 24.4 0.0 3.7e-05 24.0 0.0 1.1 1 0 0 1 1 1 1 AAA domain ABC_tran PF00005.27 gi|48477736|ref|YP_023442.1| - 0.028 14.9 0.0 0.031 14.8 0.0 1.3 1 1 0 1 1 1 0 ABC transporter DAP3 PF10236.9 gi|48477736|ref|YP_023442.1| - 0.068 12.3 0.0 0.088 12.0 0.0 1.1 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 AAA_29 PF13555.6 gi|48477736|ref|YP_023442.1| - 0.076 12.8 0.1 0.15 11.8 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain Cytidylate_kin PF02224.18 gi|48477736|ref|YP_023442.1| - 0.077 12.7 0.4 0.23 11.2 0.0 1.8 2 0 0 2 2 2 0 Cytidylate kinase PPV_E1_N PF00524.18 gi|48477736|ref|YP_023442.1| - 0.1 13.0 0.0 0.17 12.3 0.0 1.3 1 0 0 1 1 1 0 E1 Protein, N terminal domain Viral_helicase1 PF01443.18 gi|48477736|ref|YP_023442.1| - 0.12 12.1 0.0 0.17 11.6 0.0 1.4 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase NB-ARC PF00931.22 gi|48477736|ref|YP_023442.1| - 0.14 11.3 0.0 0.2 10.8 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain RsgA_GTPase PF03193.16 gi|48477736|ref|YP_023442.1| - 0.15 12.0 0.2 0.25 11.2 0.2 1.4 1 0 0 1 1 1 0 RsgA GTPase EMC3_TMCO1 PF01956.16 gi|48477737|ref|YP_023443.1| - 4.7e-36 124.1 16.9 4.7e-36 124.1 16.9 2.0 2 0 0 2 2 2 1 Integral membrane protein EMC3/TMCO1-like E1-E2_ATPase PF00122.20 gi|48477737|ref|YP_023443.1| - 3.9 7.0 5.2 8.5 5.9 0.4 2.2 2 0 0 2 2 2 0 E1-E2 ATPase AAA_18 PF13238.6 gi|48477738|ref|YP_023444.1| - 7.5e-19 68.6 0.1 1.1e-18 68.0 0.1 1.2 1 0 0 1 1 1 1 AAA domain Cytidylate_kin2 PF13189.6 gi|48477738|ref|YP_023444.1| - 2.3e-18 67.0 2.5 2.6e-16 60.3 2.5 2.1 1 1 0 1 1 1 1 Cytidylate kinase-like family Cytidylate_kin PF02224.18 gi|48477738|ref|YP_023444.1| - 5.2e-11 42.7 1.2 3.7e-07 30.1 0.0 3.0 1 1 1 2 2 2 2 Cytidylate kinase SKI PF01202.22 gi|48477738|ref|YP_023444.1| - 3.5e-10 40.2 0.2 8.7e-10 38.9 0.2 1.6 1 1 0 1 1 1 1 Shikimate kinase AAA_17 PF13207.6 gi|48477738|ref|YP_023444.1| - 8.1e-07 29.5 0.0 3.2e-06 27.6 0.0 1.8 1 1 0 1 1 1 1 AAA domain PRK PF00485.18 gi|48477738|ref|YP_023444.1| - 0.00015 21.6 6.8 0.068 12.9 0.3 2.1 1 1 1 2 2 2 2 Phosphoribulokinase / Uridine kinase family AAA_16 PF13191.6 gi|48477738|ref|YP_023444.1| - 0.00051 20.5 0.0 0.00056 20.3 0.0 1.3 1 1 0 1 1 1 1 AAA ATPase domain AAA_33 PF13671.6 gi|48477738|ref|YP_023444.1| - 0.0015 18.7 0.0 0.002 18.3 0.0 1.4 1 1 0 1 1 1 1 AAA domain dNK PF01712.19 gi|48477738|ref|YP_023444.1| - 0.0023 17.8 10.2 0.062 13.2 0.1 2.3 1 1 1 2 2 2 2 Deoxynucleoside kinase ADK PF00406.22 gi|48477738|ref|YP_023444.1| - 0.0039 17.3 2.0 0.022 14.9 0.0 2.7 2 1 1 3 3 3 1 Adenylate kinase AAA_22 PF13401.6 gi|48477738|ref|YP_023444.1| - 0.0097 16.2 0.0 0.015 15.6 0.0 1.5 1 0 0 1 1 1 1 AAA domain Thymidylate_kin PF02223.17 gi|48477738|ref|YP_023444.1| - 0.016 14.9 1.1 0.22 11.2 1.1 2.3 1 1 0 1 1 1 0 Thymidylate kinase ABC_tran PF00005.27 gi|48477738|ref|YP_023444.1| - 0.022 15.3 0.2 0.026 15.1 0.2 1.3 1 1 0 1 1 1 0 ABC transporter AAA PF00004.29 gi|48477738|ref|YP_023444.1| - 0.026 15.0 0.0 0.049 14.1 0.0 1.5 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) CoaE PF01121.20 gi|48477738|ref|YP_023444.1| - 0.068 12.8 0.1 1.8 8.2 0.1 2.1 1 1 1 2 2 2 0 Dephospho-CoA kinase RNA_helicase PF00910.22 gi|48477738|ref|YP_023444.1| - 0.073 13.5 0.7 0.15 12.5 0.0 1.8 2 0 0 2 2 2 0 RNA helicase CbiA PF01656.23 gi|48477738|ref|YP_023444.1| - 0.083 13.0 0.3 0.26 11.4 0.3 1.7 1 0 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain NTPase_1 PF03266.15 gi|48477738|ref|YP_023444.1| - 0.15 12.0 0.1 0.37 10.7 0.0 1.7 2 0 0 2 2 2 0 NTPase APS_kinase PF01583.20 gi|48477738|ref|YP_023444.1| - 0.15 12.0 0.0 0.3 11.0 0.0 1.5 1 0 0 1 1 1 0 Adenylylsulphate kinase Zeta_toxin PF06414.12 gi|48477738|ref|YP_023444.1| - 0.2 10.9 1.5 0.34 10.2 0.3 2.2 2 1 0 2 2 2 0 Zeta toxin AAA_28 PF13521.6 gi|48477738|ref|YP_023444.1| - 0.26 11.5 1.5 0.59 10.4 1.5 1.9 1 1 0 1 1 1 0 AAA domain TruB_N PF01509.18 gi|48477739|ref|YP_023445.1| - 9.3e-26 91.0 0.4 5.6e-22 78.7 0.4 3.3 1 1 0 1 1 1 1 TruB family pseudouridylate synthase (N terminal domain) TruB_C_2 PF16198.5 gi|48477739|ref|YP_023445.1| - 1.7e-19 69.7 0.0 3.1e-19 68.9 0.0 1.5 1 0 0 1 1 1 1 tRNA pseudouridylate synthase B C-terminal domain PUA PF01472.20 gi|48477739|ref|YP_023445.1| - 1.9e-13 50.1 0.3 3.2e-13 49.5 0.3 1.4 1 0 0 1 1 1 1 PUA domain UPF0113 PF03657.13 gi|48477739|ref|YP_023445.1| - 3.5e-07 30.4 0.2 9.2e-07 29.0 0.1 1.7 2 0 0 2 2 2 1 UPF0113 PUA domain DKCLD PF08068.12 gi|48477739|ref|YP_023445.1| - 0.00034 20.6 0.0 0.0012 18.8 0.1 1.9 2 0 0 2 2 2 1 DKCLD (NUC011) domain PseudoU_synth_2 PF00849.22 gi|48477739|ref|YP_023445.1| - 0.003 17.6 0.0 0.0079 16.3 0.0 1.5 1 1 0 1 1 1 1 RNA pseudouridylate synthase PUA_3 PF17785.1 gi|48477739|ref|YP_023445.1| - 0.004 16.9 0.0 0.0076 16.0 0.0 1.4 1 0 0 1 1 1 1 PUA-like domain Nop PF01798.18 gi|48477740|ref|YP_023446.1| - 1.2e-30 106.7 0.1 5.7e-30 104.5 0.0 1.9 2 1 1 3 3 3 1 snoRNA binding domain, fibrillarin GATase_7 PF13537.6 gi|48477741|ref|YP_023447.1| - 2.7e-22 79.0 0.0 4.7e-22 78.2 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_6 PF13522.6 gi|48477741|ref|YP_023447.1| - 2.2e-18 66.8 0.0 3.9e-18 65.9 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain Pribosyltran PF00156.27 gi|48477741|ref|YP_023447.1| - 6.3e-07 29.0 0.3 1.4e-06 28.0 0.3 1.5 1 0 0 1 1 1 1 Phosphoribosyl transferase domain GATase_4 PF13230.6 gi|48477741|ref|YP_023447.1| - 0.0039 16.1 0.0 0.0064 15.4 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferases class-II PRTase_2 PF15609.6 gi|48477741|ref|YP_023447.1| - 0.058 12.9 0.1 0.1 12.1 0.1 1.3 1 0 0 1 1 1 0 Phosphoribosyl transferase LSM PF01423.22 gi|48477742|ref|YP_023448.1| - 1.4e-21 75.9 1.6 1.6e-21 75.7 1.6 1.0 1 0 0 1 1 1 1 LSM domain SM-ATX PF14438.6 gi|48477742|ref|YP_023448.1| - 0.018 15.2 0.2 0.024 14.8 0.2 1.3 1 0 0 1 1 1 0 Ataxin 2 SM domain Isochorismatase PF00857.20 gi|48477743|ref|YP_023449.1| - 2.2e-37 128.9 0.0 2.4e-37 128.8 0.0 1.0 1 0 0 1 1 1 1 Isochorismatase family Peptidase_S24 PF00717.23 gi|48477743|ref|YP_023449.1| - 0.048 13.6 0.0 0.13 12.2 0.0 1.8 1 1 0 1 1 1 0 Peptidase S24-like DNA_ligase_A_M PF01068.21 gi|48477744|ref|YP_023450.1| - 4.3e-56 189.8 0.1 8.5e-56 188.8 0.0 1.5 2 0 0 2 2 2 1 ATP dependent DNA ligase domain DNA_ligase_A_N PF04675.14 gi|48477744|ref|YP_023450.1| - 3e-35 122.1 0.1 1.1e-34 120.3 0.1 1.9 2 0 0 2 2 2 1 DNA ligase N terminus DNA_ligase_A_C PF04679.15 gi|48477744|ref|YP_023450.1| - 7.8e-24 84.1 0.0 1.5e-23 83.3 0.0 1.5 1 0 0 1 1 1 1 ATP dependent DNA ligase C terminal region mRNA_cap_enzyme PF01331.19 gi|48477744|ref|YP_023450.1| - 0.011 15.5 0.0 0.1 12.4 0.0 2.2 2 0 0 2 2 2 0 mRNA capping enzyme, catalytic domain DNA_ligase_OB_2 PF14743.6 gi|48477744|ref|YP_023450.1| - 0.048 13.7 0.0 0.15 12.1 0.0 1.9 1 0 0 1 1 1 0 DNA ligase OB-like domain tRNA_anti-codon PF01336.25 gi|48477745|ref|YP_023451.1| - 3e-06 27.1 0.1 3.8e-06 26.8 0.1 1.3 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain REPA_OB_2 PF16900.5 gi|48477745|ref|YP_023451.1| - 4e-05 23.5 0.3 6.6e-05 22.8 0.3 1.4 1 0 0 1 1 1 1 Replication protein A OB domain CDC24_OB3 PF17244.2 gi|48477745|ref|YP_023451.1| - 0.00012 21.9 0.0 0.00013 21.8 0.0 1.1 1 0 0 1 1 1 1 Cell division control protein 24, OB domain 3 MFS_1 PF07690.16 gi|48477746|ref|YP_023452.1| - 8.4e-21 74.3 55.7 1.1e-15 57.4 39.4 2.3 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_4 PF06779.14 gi|48477746|ref|YP_023452.1| - 0.0017 17.7 16.5 0.029 13.7 15.9 2.2 1 1 1 2 2 2 2 Uncharacterised MFS-type transporter YbfB ROK PF00480.20 gi|48477747|ref|YP_023453.1| - 6.4e-24 84.9 0.0 9.5e-23 81.1 0.0 2.0 1 1 0 1 1 1 1 ROK family Glucokinase PF02685.16 gi|48477747|ref|YP_023453.1| - 0.018 14.0 0.1 2 7.3 0.0 2.8 2 1 1 3 3 3 0 Glucokinase SIS_2 PF13580.6 gi|48477748|ref|YP_023454.1| - 6e-26 91.1 0.5 7.5e-26 90.8 0.5 1.1 1 0 0 1 1 1 1 SIS domain SIS PF01380.22 gi|48477748|ref|YP_023454.1| - 2.4e-09 37.1 1.7 4.2e-09 36.3 0.7 1.8 2 0 0 2 2 2 1 SIS domain Peripla_BP_2 PF01497.18 gi|48477749|ref|YP_023455.1| - 8.1e-27 94.3 0.0 2.2e-26 92.9 0.0 1.6 1 1 0 1 1 1 1 Periplasmic binding protein Nanovirus_C8 PF05629.11 gi|48477749|ref|YP_023455.1| - 0.032 14.4 0.6 0.079 13.1 0.5 1.8 2 0 0 2 2 2 0 Nanovirus component 8 (C8) protein Esterase PF00756.20 gi|48477750|ref|YP_023456.1| - 4.3e-11 42.9 0.0 1.8e-10 40.9 0.0 1.8 1 1 0 1 1 1 1 Putative esterase Arylesterase PF01731.20 gi|48477750|ref|YP_023456.1| - 0.075 13.2 0.0 0.17 12.1 0.0 1.5 1 0 0 1 1 1 0 Arylesterase MobB PF03205.14 gi|48477751|ref|YP_023457.1| - 4.5e-18 65.4 0.0 6.3e-18 65.0 0.0 1.2 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B ATPase_2 PF01637.18 gi|48477751|ref|YP_023457.1| - 0.00023 21.1 0.5 0.00031 20.7 0.4 1.3 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea Pox_A32 PF04665.12 gi|48477751|ref|YP_023457.1| - 0.0011 18.5 1.6 0.0012 18.4 0.6 1.5 2 0 0 2 2 2 1 Poxvirus A32 protein PRK PF00485.18 gi|48477751|ref|YP_023457.1| - 0.0015 18.3 0.1 0.37 10.5 0.0 2.1 1 1 1 2 2 2 2 Phosphoribulokinase / Uridine kinase family RNA_helicase PF00910.22 gi|48477751|ref|YP_023457.1| - 0.0029 18.0 0.2 0.0066 16.8 0.0 1.7 2 0 0 2 2 2 1 RNA helicase cobW PF02492.19 gi|48477751|ref|YP_023457.1| - 0.0046 16.6 0.0 0.0062 16.2 0.0 1.4 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain ABC_tran PF00005.27 gi|48477751|ref|YP_023457.1| - 0.006 17.1 0.0 0.006 17.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_14 PF13173.6 gi|48477751|ref|YP_023457.1| - 0.012 15.6 0.3 0.024 14.7 0.1 1.7 1 1 1 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 gi|48477751|ref|YP_023457.1| - 0.014 15.3 0.0 0.024 14.6 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_7 PF12775.7 gi|48477751|ref|YP_023457.1| - 0.026 14.0 0.0 0.041 13.4 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_29 PF13555.6 gi|48477751|ref|YP_023457.1| - 0.032 14.0 0.2 0.1 12.4 0.2 1.8 2 0 0 2 2 2 0 P-loop containing region of AAA domain T2SSE PF00437.20 gi|48477751|ref|YP_023457.1| - 0.047 12.8 0.0 0.059 12.4 0.0 1.1 1 0 0 1 1 1 0 Type II/IV secretion system protein CbiA PF01656.23 gi|48477751|ref|YP_023457.1| - 0.066 13.3 0.0 0.079 13.0 0.0 1.5 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.6 gi|48477751|ref|YP_023457.1| - 0.088 12.6 0.0 0.47 10.2 0.0 1.9 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|48477751|ref|YP_023457.1| - 0.15 12.3 0.0 0.24 11.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|48477751|ref|YP_023457.1| - 0.16 12.2 0.0 0.47 10.7 0.0 1.6 1 1 0 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|48477751|ref|YP_023457.1| - 0.19 11.9 0.1 0.27 11.4 0.1 1.7 1 1 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|48477751|ref|YP_023457.1| - 1.3 9.5 5.3 3.7 8.0 5.3 2.0 1 1 0 1 1 1 0 AAA domain Met_10 PF02475.16 gi|48477752|ref|YP_023458.1| - 5.2e-43 147.1 0.0 8.2e-43 146.5 0.0 1.3 1 0 0 1 1 1 1 Met-10+ like-protein MTS PF05175.14 gi|48477752|ref|YP_023458.1| - 1.1e-05 25.1 0.0 2.1e-05 24.1 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.13 gi|48477752|ref|YP_023458.1| - 9.4e-05 21.9 0.1 0.00076 19.0 0.0 2.0 2 0 0 2 2 2 1 Ribosomal protein L11 methyltransferase (PrmA) TRM PF02005.16 gi|48477752|ref|YP_023458.1| - 0.00027 20.2 0.1 0.00042 19.6 0.1 1.3 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Cons_hypoth95 PF03602.15 gi|48477752|ref|YP_023458.1| - 0.00071 19.3 0.0 0.0013 18.5 0.0 1.5 1 0 0 1 1 1 1 Conserved hypothetical protein 95 PRMT5 PF05185.16 gi|48477752|ref|YP_023458.1| - 0.0013 18.6 0.0 0.0027 17.6 0.0 1.5 1 0 0 1 1 1 1 PRMT5 arginine-N-methyltransferase Trm5_N PF18093.1 gi|48477752|ref|YP_023458.1| - 0.0018 18.2 1.4 0.005 16.7 1.4 1.8 1 0 0 1 1 1 1 tRNA methyltransferase 5 N-terminal domain Methyltransf_31 PF13847.6 gi|48477752|ref|YP_023458.1| - 0.0068 16.2 0.0 0.012 15.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|48477752|ref|YP_023458.1| - 0.011 16.4 0.0 0.022 15.4 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_15 PF09445.10 gi|48477752|ref|YP_023458.1| - 0.012 15.1 0.0 0.038 13.6 0.0 1.8 1 1 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Methyltransf_18 PF12847.7 gi|48477752|ref|YP_023458.1| - 0.013 15.4 0.0 0.024 14.5 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain DNA_methylase PF00145.17 gi|48477752|ref|YP_023458.1| - 0.034 13.5 0.2 0.15 11.3 0.0 2.0 2 0 0 2 2 2 0 C-5 cytosine-specific DNA methylase Methyltransf_12 PF08242.12 gi|48477752|ref|YP_023458.1| - 0.034 14.9 0.0 0.061 14.1 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain BPD_transp_1 PF00528.22 gi|48477753|ref|YP_023459.1| - 1.4e-31 109.7 19.1 1.4e-31 109.7 19.1 2.1 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|48477754|ref|YP_023460.1| - 1.2e-15 57.7 21.8 1.2e-15 57.7 21.8 1.8 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|48477754|ref|YP_023460.1| - 0.053 13.5 0.1 0.053 13.5 0.1 3.8 3 1 0 3 3 3 0 N-terminal TM domain of oligopeptide transport permease C PHtD_u1 PF16645.5 gi|48477754|ref|YP_023460.1| - 0.098 13.1 0.1 0.3 11.6 0.1 1.8 1 0 0 1 1 1 0 Unstructured region on Pneumococcal histidine triad protein ABC_tran PF00005.27 gi|48477755|ref|YP_023461.1| - 1.6e-53 180.9 0.0 2.4e-26 92.9 0.0 2.4 2 0 0 2 2 2 2 ABC transporter oligo_HPY PF08352.12 gi|48477755|ref|YP_023461.1| - 9.4e-34 115.7 0.2 9.2e-16 58.1 0.0 2.5 2 0 0 2 2 2 2 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|48477755|ref|YP_023461.1| - 4.8e-12 46.3 5.8 0.00013 21.9 0.0 4.2 2 2 2 4 4 4 3 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|48477755|ref|YP_023461.1| - 1.1e-09 38.1 2.0 2.5e-05 23.8 0.3 3.2 2 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|48477755|ref|YP_023461.1| - 1.9e-08 33.9 0.7 0.00075 19.2 0.1 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain DUF87 PF01935.17 gi|48477755|ref|YP_023461.1| - 2.7e-08 34.2 1.1 0.0016 18.5 0.6 2.7 2 1 0 2 2 2 2 Helicase HerA, central domain AAA_22 PF13401.6 gi|48477755|ref|YP_023461.1| - 2.8e-08 34.1 0.8 0.0071 16.6 0.1 3.7 3 1 0 3 3 2 2 AAA domain AAA_16 PF13191.6 gi|48477755|ref|YP_023461.1| - 2.2e-07 31.4 0.0 0.047 14.1 0.0 3.0 3 0 0 3 3 3 2 AAA ATPase domain PRK PF00485.18 gi|48477755|ref|YP_023461.1| - 4e-07 30.0 0.0 0.0011 18.7 0.0 2.4 2 0 0 2 2 2 2 Phosphoribulokinase / Uridine kinase family NACHT PF05729.12 gi|48477755|ref|YP_023461.1| - 1e-06 28.8 0.0 0.012 15.5 0.0 2.3 2 0 0 2 2 2 2 NACHT domain AAA_23 PF13476.6 gi|48477755|ref|YP_023461.1| - 1.8e-06 28.6 0.5 0.02 15.4 0.1 2.6 2 0 0 2 2 2 2 AAA domain MobB PF03205.14 gi|48477755|ref|YP_023461.1| - 3.7e-05 23.6 0.3 0.016 15.1 0.1 2.6 3 0 0 3 3 2 1 Molybdopterin guanine dinucleotide synthesis protein B ATP-synt_ab PF00006.25 gi|48477755|ref|YP_023461.1| - 6.2e-05 22.8 0.0 0.16 11.6 0.0 2.3 2 0 0 2 2 2 2 ATP synthase alpha/beta family, nucleotide-binding domain RNA_helicase PF00910.22 gi|48477755|ref|YP_023461.1| - 7.5e-05 23.1 0.1 0.2 12.1 0.0 3.1 3 0 0 3 3 2 1 RNA helicase ATPase_2 PF01637.18 gi|48477755|ref|YP_023461.1| - 8.7e-05 22.5 0.3 0.0026 17.7 0.0 2.5 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea AAA_24 PF13479.6 gi|48477755|ref|YP_023461.1| - 8.8e-05 22.3 0.9 0.094 12.4 0.0 2.7 3 0 0 3 3 2 2 AAA domain Mg_chelatase PF01078.21 gi|48477755|ref|YP_023461.1| - 0.00012 21.5 0.0 0.065 12.6 0.0 2.6 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI RsgA_GTPase PF03193.16 gi|48477755|ref|YP_023461.1| - 0.00012 22.0 0.4 0.17 11.8 0.1 2.6 2 0 0 2 2 2 2 RsgA GTPase NB-ARC PF00931.22 gi|48477755|ref|YP_023461.1| - 0.00013 21.2 0.2 0.22 10.7 0.0 2.3 2 0 0 2 2 2 2 NB-ARC domain AAA_18 PF13238.6 gi|48477755|ref|YP_023461.1| - 0.0002 21.9 0.1 0.35 11.4 0.0 3.4 3 0 0 3 3 3 1 AAA domain TniB PF05621.11 gi|48477755|ref|YP_023461.1| - 0.00026 20.5 0.8 0.11 11.9 0.0 3.9 4 0 0 4 4 4 1 Bacterial TniB protein Sigma54_activat PF00158.26 gi|48477755|ref|YP_023461.1| - 0.00031 20.5 0.0 0.35 10.6 0.0 2.3 2 0 0 2 2 2 2 Sigma-54 interaction domain T2SSE PF00437.20 gi|48477755|ref|YP_023461.1| - 0.00034 19.8 0.2 0.028 13.5 0.0 2.4 2 0 0 2 2 2 1 Type II/IV secretion system protein AAA_33 PF13671.6 gi|48477755|ref|YP_023461.1| - 0.00049 20.3 0.0 1 9.5 0.0 2.5 2 0 0 2 2 2 2 AAA domain ATPase PF06745.13 gi|48477755|ref|YP_023461.1| - 0.00089 18.7 0.4 0.46 9.8 0.0 2.8 2 0 0 2 2 2 1 KaiC MMR_HSR1 PF01926.23 gi|48477755|ref|YP_023461.1| - 0.0011 19.1 0.3 0.93 9.6 0.2 2.6 2 0 0 2 2 2 1 50S ribosome-binding GTPase AAA_5 PF07728.14 gi|48477755|ref|YP_023461.1| - 0.0018 18.3 0.1 3.1 7.8 0.0 2.5 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|48477755|ref|YP_023461.1| - 0.0022 18.4 0.0 4.1 7.8 0.0 3.0 3 0 0 3 3 2 0 ATPase family associated with various cellular activities (AAA) NTPase_1 PF03266.15 gi|48477755|ref|YP_023461.1| - 0.0024 17.8 0.7 2.5 8.0 0.0 2.6 2 0 0 2 2 2 2 NTPase FtsK_SpoIIIE PF01580.18 gi|48477755|ref|YP_023461.1| - 0.0034 16.8 0.1 1.3 8.3 0.0 2.4 2 0 0 2 2 2 1 FtsK/SpoIIIE family AAA_7 PF12775.7 gi|48477755|ref|YP_023461.1| - 0.0054 16.3 0.1 1.9 8.0 0.0 2.4 2 0 0 2 2 2 1 P-loop containing dynein motor region Roc PF08477.13 gi|48477755|ref|YP_023461.1| - 0.0059 16.8 0.3 5.7 7.2 0.0 2.9 3 0 0 3 3 2 0 Ras of Complex, Roc, domain of DAPkinase AAA_13 PF13166.6 gi|48477755|ref|YP_023461.1| - 0.0083 14.8 0.3 15 4.1 0.0 3.1 3 0 0 3 3 3 0 AAA domain AAA_25 PF13481.6 gi|48477755|ref|YP_023461.1| - 0.011 15.3 0.1 11 5.5 0.0 3.2 3 0 0 3 3 3 0 AAA domain TsaE PF02367.17 gi|48477755|ref|YP_023461.1| - 0.013 15.5 0.1 0.74 9.8 0.0 2.4 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE DEAD PF00270.29 gi|48477755|ref|YP_023461.1| - 0.015 15.1 0.3 0.41 10.4 0.1 2.9 2 1 0 2 2 2 0 DEAD/DEAH box helicase ATP_bind_1 PF03029.17 gi|48477755|ref|YP_023461.1| - 0.017 14.9 0.3 3.3 7.4 0.0 2.4 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein CbiA PF01656.23 gi|48477755|ref|YP_023461.1| - 0.018 15.1 0.2 3.7 7.6 0.1 2.7 2 0 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain IstB_IS21 PF01695.17 gi|48477755|ref|YP_023461.1| - 0.018 14.8 0.1 2.6 7.7 0.0 2.5 2 0 0 2 2 2 0 IstB-like ATP binding protein G-alpha PF00503.20 gi|48477755|ref|YP_023461.1| - 0.025 13.8 0.0 5 6.2 0.0 2.4 2 0 0 2 2 2 0 G-protein alpha subunit AAA_14 PF13173.6 gi|48477755|ref|YP_023461.1| - 0.045 13.8 0.3 0.72 9.9 0.1 2.7 3 0 0 3 3 2 0 AAA domain PhoH PF02562.16 gi|48477755|ref|YP_023461.1| - 0.058 12.8 0.1 5.7 6.3 0.0 2.4 2 0 0 2 2 2 0 PhoH-like protein TrwB_AAD_bind PF10412.9 gi|48477755|ref|YP_023461.1| - 0.096 11.6 0.4 0.77 8.6 0.0 2.0 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain Zeta_toxin PF06414.12 gi|48477755|ref|YP_023461.1| - 0.11 11.7 0.7 5.6 6.2 0.0 2.6 3 0 0 3 3 3 0 Zeta toxin AAA_30 PF13604.6 gi|48477755|ref|YP_023461.1| - 0.12 12.0 0.2 3.4 7.4 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.6 gi|48477755|ref|YP_023461.1| - 0.13 12.6 0.6 8.9 6.6 0.0 2.6 2 1 0 2 2 2 0 AAA domain APS_kinase PF01583.20 gi|48477755|ref|YP_023461.1| - 0.13 12.1 0.3 15 5.5 0.1 2.4 2 0 0 2 2 2 0 Adenylylsulphate kinase AAA_15 PF13175.6 gi|48477755|ref|YP_023461.1| - 0.15 11.8 9.2 0.12 12.1 0.3 2.8 3 1 0 3 3 2 0 AAA ATPase domain Pox_A32 PF04665.12 gi|48477755|ref|YP_023461.1| - 0.39 10.1 2.9 1.6 8.1 0.0 2.7 3 0 0 3 3 2 0 Poxvirus A32 protein SBP_bac_5 PF00496.22 gi|48477757|ref|YP_023463.1| - 9.2e-55 186.1 10.9 9.2e-55 186.1 10.9 1.9 2 0 0 2 2 2 1 Bacterial extracellular solute-binding proteins, family 5 Middle Big_1 PF02369.16 gi|48477757|ref|YP_023463.1| - 1.6e-05 24.8 0.1 1.6e-05 24.8 0.1 7.5 8 1 0 8 8 8 2 Bacterial Ig-like domain (group 1) CarboxypepD_reg PF13620.6 gi|48477757|ref|YP_023463.1| - 0.00016 21.9 0.0 0.00016 21.9 0.0 5.1 4 1 0 4 4 4 1 Carboxypeptidase regulatory-like domain YtkA PF13115.6 gi|48477757|ref|YP_023463.1| - 0.0023 18.5 0.2 2 9.0 0.1 3.6 3 0 0 3 3 3 1 YtkA-like Invasin_D3 PF09134.10 gi|48477757|ref|YP_023463.1| - 0.0024 18.1 13.4 0.0065 16.7 0.0 4.4 4 1 0 4 4 4 2 Invasin, domain 3 Proteasome PF00227.26 gi|48477758|ref|YP_023464.1| - 8.8e-52 175.4 1.8 1e-51 175.2 1.8 1.0 1 0 0 1 1 1 1 Proteasome subunit KH_7 PF17214.3 gi|48477759|ref|YP_023465.1| - 3.2e-26 91.1 4.8 9.3e-24 83.2 0.4 3.5 3 0 0 3 3 3 2 KH domain Beta-Casp PF10996.8 gi|48477759|ref|YP_023465.1| - 7.1e-20 71.3 0.0 3.9e-19 69.0 0.0 2.2 2 0 0 2 2 2 1 Beta-Casp domain RMMBL PF07521.12 gi|48477759|ref|YP_023465.1| - 8e-15 54.5 0.1 2.9e-14 52.8 0.0 2.0 2 0 0 2 2 2 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B_6 PF16661.5 gi|48477759|ref|YP_023465.1| - 5.1e-14 52.2 0.1 9.9e-14 51.2 0.1 1.5 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|48477759|ref|YP_023465.1| - 2.8e-09 37.3 1.7 2.6e-08 34.1 1.8 2.4 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|48477759|ref|YP_023465.1| - 1e-05 25.1 0.0 4.8e-05 23.0 0.1 2.0 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|48477759|ref|YP_023465.1| - 0.0079 16.1 0.0 0.021 14.7 0.0 1.7 1 0 0 1 1 1 1 Beta-lactamase superfamily domain DUF4550 PF15084.6 gi|48477759|ref|YP_023465.1| - 0.095 13.1 0.0 0.36 11.3 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4550) TAL_FSA PF00923.19 gi|48477761|ref|YP_023467.1| - 3.3e-61 207.2 0.5 9.9e-61 205.6 0.5 1.7 1 1 0 1 1 1 1 Transaldolase/Fructose-6-phosphate aldolase AAA-ATPase_like PF09820.9 gi|48477761|ref|YP_023467.1| - 0.025 14.0 0.0 0.04 13.3 0.0 1.3 1 0 0 1 1 1 0 Predicted AAA-ATPase Peripla_BP_6 PF13458.6 gi|48477761|ref|YP_023467.1| - 0.06 13.0 0.0 0.075 12.7 0.0 1.1 1 0 0 1 1 1 0 Periplasmic binding protein Transket_pyr PF02779.24 gi|48477762|ref|YP_023468.1| - 6.5e-38 130.2 0.0 9.1e-38 129.7 0.0 1.2 1 0 0 1 1 1 1 Transketolase, pyrimidine binding domain Transketolase_C PF02780.20 gi|48477762|ref|YP_023468.1| - 3.4e-32 110.9 0.0 6.5e-32 110.0 0.0 1.5 1 0 0 1 1 1 1 Transketolase, C-terminal domain PFOR_II PF17147.4 gi|48477762|ref|YP_023468.1| - 0.0057 16.9 0.1 0.05 13.9 0.0 2.4 3 0 0 3 3 3 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_N PF00456.21 gi|48477763|ref|YP_023469.1| - 3.4e-57 193.9 0.0 5.6e-57 193.2 0.0 1.2 1 0 0 1 1 1 1 Transketolase, thiamine diphosphate binding domain DXP_synthase_N PF13292.6 gi|48477763|ref|YP_023469.1| - 3.1e-11 43.0 0.9 1.8e-08 34.0 0.4 2.9 1 1 0 2 2 2 2 1-deoxy-D-xylulose-5-phosphate synthase TPP_enzyme_C PF02775.21 gi|48477763|ref|YP_023469.1| - 1.6e-07 31.2 0.3 6e-06 26.1 0.3 2.2 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain XFP_N PF09364.10 gi|48477763|ref|YP_023469.1| - 3.2e-05 22.9 0.1 5e-05 22.3 0.1 1.5 1 0 0 1 1 1 1 XFP N-terminal domain E1_dh PF00676.20 gi|48477763|ref|YP_023469.1| - 8.4e-05 21.7 0.0 0.00034 19.7 0.0 1.8 2 0 0 2 2 2 1 Dehydrogenase E1 component Integrase_H2C2 PF17921.1 gi|48477763|ref|YP_023469.1| - 0.1 12.7 0.0 0.19 11.8 0.0 1.4 1 0 0 1 1 1 0 Integrase zinc binding domain Hexapep PF00132.24 gi|48477764|ref|YP_023470.1| - 1e-17 63.1 24.9 6.7e-08 32.0 4.0 4.1 2 1 1 4 4 4 4 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|48477764|ref|YP_023470.1| - 5.9e-09 35.5 21.1 0.0042 16.8 2.4 4.3 2 1 2 4 4 4 4 Hexapeptide repeat of succinyl-transferase Fucokinase PF07959.12 gi|48477764|ref|YP_023470.1| - 0.21 10.5 1.2 1.4 7.8 1.2 1.9 1 1 0 1 1 1 0 L-fucokinase B_solenoid_ydck PF18836.1 gi|48477764|ref|YP_023470.1| - 2.5 8.1 5.1 55 3.9 0.1 3.7 3 1 1 4 4 4 0 Beta solenoid repeat from YDCK DUF4954 PF16314.5 gi|48477764|ref|YP_023470.1| - 3.3 5.7 10.3 18 3.3 10.3 2.1 1 1 0 1 1 1 0 Domain of unknown function (DUF4954) CobS PF02654.15 gi|48477765|ref|YP_023471.1| - 4.6e-34 118.4 5.7 5.3e-34 118.2 5.7 1.0 1 0 0 1 1 1 1 Cobalamin-5-phosphate synthase Peptidase_C3 PF00548.20 gi|48477766|ref|YP_023472.1| - 0.12 12.3 0.3 0.25 11.3 0.2 1.6 1 1 1 2 2 2 0 3C cysteine protease (picornain 3C) ArsR PF09824.9 gi|48477767|ref|YP_023473.1| - 3.1e-59 199.1 0.5 3.5e-59 198.9 0.5 1.0 1 0 0 1 1 1 1 ArsR transcriptional regulator Sulfolobus_pRN PF05584.11 gi|48477767|ref|YP_023473.1| - 0.0012 18.8 0.2 0.003 17.6 0.0 1.7 2 0 0 2 2 2 1 Sulfolobus plasmid regulatory protein Trm56 PF01994.16 gi|48477768|ref|YP_023474.1| - 2.8e-44 149.8 0.4 1.4e-43 147.6 0.1 2.1 2 0 0 2 2 2 1 tRNA ribose 2'-O-methyltransferase, aTrm56 HD PF01966.22 gi|48477768|ref|YP_023474.1| - 8.5e-17 61.5 0.9 2.3e-16 60.1 0.9 1.8 1 0 0 1 1 1 1 HD domain SipA PF09052.10 gi|48477768|ref|YP_023474.1| - 0.031 13.9 0.3 0.055 13.1 0.3 1.3 1 0 0 1 1 1 0 SipA N-terminal domain NifT PF06988.11 gi|48477768|ref|YP_023474.1| - 0.17 11.7 1.0 7.2 6.5 0.0 3.2 3 1 1 4 4 4 0 NifT/FixU protein EMG1 PF03587.14 gi|48477769|ref|YP_023475.1| - 1.5e-45 155.3 0.0 1.7e-45 155.1 0.0 1.0 1 0 0 1 1 1 1 EMG1/NEP1 methyltransferase Peptidase_M48 PF01435.18 gi|48477770|ref|YP_023476.1| - 1.1e-22 80.8 0.3 1.1e-22 80.8 0.3 1.6 2 0 0 2 2 2 1 Peptidase family M48 DUF349 PF03993.12 gi|48477772|ref|YP_023478.1| - 0.012 15.9 10.6 0.012 15.9 10.6 5.6 2 2 3 5 5 5 0 Domain of Unknown Function (DUF349) Spc7 PF08317.11 gi|48477772|ref|YP_023478.1| - 0.17 10.7 63.5 0.036 12.9 30.7 2.9 1 1 2 3 3 3 0 Spc7 kinetochore protein Syntaxin_2 PF14523.6 gi|48477772|ref|YP_023478.1| - 0.22 11.9 45.4 0.28 11.6 8.2 4.3 1 1 2 4 4 4 0 Syntaxin-like protein Laminin_I PF06008.14 gi|48477772|ref|YP_023478.1| - 1.6 8.4 51.3 0.17 11.5 10.6 3.0 1 1 2 3 3 3 0 Laminin Domain I Lipase_GDSL PF00657.22 gi|48477772|ref|YP_023478.1| - 3.1 7.7 9.9 1.7 8.6 5.4 2.7 1 1 1 2 2 2 0 GDSL-like Lipase/Acylhydrolase DUF948 PF06103.11 gi|48477772|ref|YP_023478.1| - 3.1 8.1 18.2 0.47 10.7 0.3 4.0 3 2 1 4 4 4 0 Bacterial protein of unknown function (DUF948) HOOK PF05622.12 gi|48477772|ref|YP_023478.1| - 7.2 4.6 57.6 9.2 4.3 57.6 1.1 1 0 0 1 1 1 0 HOOK protein DUF131 PF01998.17 gi|48477773|ref|YP_023479.1| - 1.8e-20 72.3 0.1 1.8e-20 72.3 0.1 2.8 1 1 1 2 2 2 1 Protein of unknown function DUF131 PrgI PF12666.7 gi|48477773|ref|YP_023479.1| - 0.4 11.4 9.3 0.075 13.7 1.5 2.2 2 0 0 2 2 2 0 PrgI family protein Tmemb_9 PF05434.11 gi|48477773|ref|YP_023479.1| - 0.49 10.3 0.0 0.49 10.3 0.0 2.2 2 0 0 2 2 2 0 TMEM9 DUF2070 PF09843.9 gi|48477773|ref|YP_023479.1| - 0.52 8.5 8.2 0.71 8.1 8.2 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) TraG_N PF07916.11 gi|48477773|ref|YP_023479.1| - 2.8 6.7 6.5 0.19 10.6 0.1 1.9 2 0 0 2 2 2 0 TraG-like protein, N-terminal region PAP2_C PF14360.6 gi|48477773|ref|YP_023479.1| - 8.9 6.9 12.5 3.3 8.3 1.1 2.4 2 0 0 2 2 2 0 PAP2 superfamily C-terminal DUF4131 PF13567.6 gi|48477773|ref|YP_023479.1| - 9.3 5.9 7.7 1 9.0 0.6 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4131) NTP_transferase PF00483.23 gi|48477774|ref|YP_023480.1| - 3.9e-46 157.6 0.0 5.6e-46 157.1 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|48477774|ref|YP_023480.1| - 1.7e-08 35.0 0.0 2.1e-08 34.7 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.24 gi|48477774|ref|YP_023480.1| - 6.7e-08 32.0 8.2 0.0014 18.2 2.8 3.0 1 1 1 2 2 2 2 Bacterial transferase hexapeptide (six repeats) DUF4954 PF16314.5 gi|48477774|ref|YP_023480.1| - 0.00035 18.9 3.8 0.00051 18.3 3.8 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4954) Fucokinase PF07959.12 gi|48477774|ref|YP_023480.1| - 0.03 13.3 6.4 0.36 9.7 1.0 2.5 2 1 1 3 3 3 0 L-fucokinase Hexapep_2 PF14602.6 gi|48477774|ref|YP_023480.1| - 0.95 9.3 10.7 0.11 12.3 0.9 3.2 3 0 0 3 3 3 0 Hexapeptide repeat of succinyl-transferase HTH_5 PF01022.20 gi|48477775|ref|YP_023481.1| - 0.0028 17.5 0.1 0.0049 16.7 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|48477775|ref|YP_023481.1| - 0.0046 16.8 0.0 0.0085 16.0 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_12 PF08461.10 gi|48477775|ref|YP_023481.1| - 0.0072 16.2 0.9 0.013 15.4 0.2 1.9 2 1 0 2 2 2 1 Ribonuclease R winged-helix domain PaaX PF07848.12 gi|48477775|ref|YP_023481.1| - 0.021 15.0 0.0 0.032 14.4 0.0 1.2 1 0 0 1 1 1 0 PaaX-like protein TcdB_N PF12918.7 gi|48477775|ref|YP_023481.1| - 0.027 14.8 0.5 0.064 13.6 0.2 1.8 2 0 0 2 2 2 0 TcdB toxin N-terminal helical domain HTH_20 PF12840.7 gi|48477775|ref|YP_023481.1| - 0.03 14.4 0.0 0.063 13.4 0.0 1.7 1 1 0 1 1 1 0 Helix-turn-helix domain MerR PF00376.23 gi|48477775|ref|YP_023481.1| - 0.032 14.0 0.1 3 7.7 0.0 2.4 2 0 0 2 2 2 0 MerR family regulatory protein DUF4423 PF14394.6 gi|48477775|ref|YP_023481.1| - 0.035 13.8 0.1 0.099 12.3 0.0 1.7 1 1 1 2 2 2 0 Domain of unknown function (DUF4423) DUF2250 PF10007.9 gi|48477775|ref|YP_023481.1| - 0.084 13.0 0.1 0.16 12.1 0.1 1.6 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) COMP PF11598.8 gi|48477775|ref|YP_023481.1| - 0.1 13.1 1.5 8.6 6.9 0.2 2.3 2 0 0 2 2 2 0 Cartilage oligomeric matrix protein Acetyltransf_1 PF00583.25 gi|48477776|ref|YP_023482.1| - 1.8e-18 66.8 0.1 2.4e-18 66.5 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|48477776|ref|YP_023482.1| - 6.6e-14 51.9 0.1 8.1e-14 51.7 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|48477776|ref|YP_023482.1| - 5.8e-12 46.0 0.2 7.6e-12 45.6 0.2 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|48477776|ref|YP_023482.1| - 6.4e-11 42.5 0.0 1.1e-10 41.8 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|48477776|ref|YP_023482.1| - 8.6e-10 39.4 0.0 1.1e-09 39.1 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|48477776|ref|YP_023482.1| - 0.00094 19.1 0.1 0.0015 18.4 0.1 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.7 gi|48477776|ref|YP_023482.1| - 0.00099 19.2 0.0 0.0038 17.3 0.0 1.8 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.6 gi|48477776|ref|YP_023482.1| - 0.0037 17.0 0.0 0.005 16.5 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|48477776|ref|YP_023482.1| - 0.0053 16.9 0.0 0.0087 16.2 0.0 1.4 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase MarR PF01047.22 gi|48477776|ref|YP_023482.1| - 0.014 15.3 0.1 0.16 11.9 0.1 2.3 2 0 0 2 2 2 0 MarR family DUF4821 PF16092.5 gi|48477776|ref|YP_023482.1| - 0.02 14.5 0.0 0.03 14.0 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4821) DUF2156 PF09924.9 gi|48477776|ref|YP_023482.1| - 0.054 12.5 0.0 0.06 12.4 0.0 1.1 1 0 0 1 1 1 0 Uncharacterised conserved protein (DUF2156) BPD_transp_1 PF00528.22 gi|48477777|ref|YP_023483.1| - 0.0025 17.6 20.7 0.0025 17.6 20.7 2.5 1 1 1 2 2 2 2 Binding-protein-dependent transport system inner membrane component SPATA19 PF15212.6 gi|48477779|ref|YP_023485.1| - 0.051 13.8 0.0 0.085 13.1 0.0 1.3 1 0 0 1 1 1 0 Spermatogenesis-associated protein 19, mitochondrial DUF1951 PF09188.10 gi|48477779|ref|YP_023485.1| - 0.1 12.6 3.4 0.088 12.8 0.6 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1951) SBP_bac_5 PF00496.22 gi|48477780|ref|YP_023486.1| - 2e-18 66.5 1.9 6.8e-18 64.8 1.9 1.9 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle Na_H_Exchanger PF00999.21 gi|48477781|ref|YP_023487.1| - 2e-31 109.1 52.6 2.8e-31 108.7 52.6 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family CBS PF00571.28 gi|48477781|ref|YP_023487.1| - 5.7e-10 39.5 0.3 9.2e-05 22.8 0.2 2.7 2 0 0 2 2 2 2 CBS domain DUF2613 PF11021.8 gi|48477781|ref|YP_023487.1| - 0.69 10.1 4.6 10 6.3 2.5 3.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2613) RibD_C PF01872.17 gi|48477782|ref|YP_023488.1| - 3.6e-29 102.0 0.0 4.4e-29 101.8 0.0 1.1 1 0 0 1 1 1 1 RibD C-terminal domain Amidohydro_1 PF01979.20 gi|48477783|ref|YP_023489.1| - 8e-11 41.8 0.0 3e-10 40.0 0.0 1.9 1 1 0 1 1 1 1 Amidohydrolase family DHBP_synthase PF00926.19 gi|48477784|ref|YP_023490.1| - 2.2e-51 174.1 0.0 2.9e-51 173.7 0.0 1.1 1 0 0 1 1 1 1 3,4-dihydroxy-2-butanone 4-phosphate synthase EFG_C PF00679.24 gi|48477784|ref|YP_023490.1| - 0.048 13.7 0.1 0.091 12.8 0.1 1.4 1 0 0 1 1 1 0 Elongation factor G C-terminus DUF2624 PF11116.8 gi|48477784|ref|YP_023490.1| - 0.13 13.2 0.0 25 5.8 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2624) DMRL_synthase PF00885.19 gi|48477785|ref|YP_023491.1| - 3.3e-12 46.4 0.0 4e-12 46.2 0.0 1.1 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase DMRL_synthase PF00885.19 gi|48477786|ref|YP_023492.1| - 6.6e-37 126.5 0.1 7.2e-37 126.3 0.1 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase Ribosomal_L16 PF00252.18 gi|48477787|ref|YP_023493.1| - 2.8e-32 111.5 0.1 3.3e-32 111.3 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L16p/L10e Arginase PF00491.21 gi|48477788|ref|YP_023494.1| - 3.9e-70 236.5 0.0 4.4e-70 236.4 0.0 1.0 1 0 0 1 1 1 1 Arginase family EFP_N PF08207.12 gi|48477789|ref|YP_023495.1| - 2.3e-05 24.3 0.0 5.4e-05 23.1 0.0 1.6 2 0 0 2 2 2 1 Elongation factor P (EF-P) KOW-like domain eIF-5a PF01287.20 gi|48477789|ref|YP_023495.1| - 0.00032 20.7 0.1 0.0016 18.5 0.1 2.0 1 1 0 1 1 1 1 Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold EFP PF01132.20 gi|48477789|ref|YP_023495.1| - 0.042 13.9 0.0 0.069 13.2 0.0 1.4 1 0 0 1 1 1 0 Elongation factor P (EF-P) OB domain MTS PF05175.14 gi|48477790|ref|YP_023496.1| - 1.1e-12 47.9 0.0 1.9e-12 47.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.13 gi|48477790|ref|YP_023496.1| - 9.1e-10 38.4 0.1 1.3e-09 37.9 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_31 PF13847.6 gi|48477790|ref|YP_023496.1| - 4e-08 33.2 0.0 5.1e-08 32.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|48477790|ref|YP_023496.1| - 5.9e-08 33.3 0.0 1.1e-07 32.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.18 gi|48477790|ref|YP_023496.1| - 2.9e-05 23.8 0.2 0.00017 21.3 0.2 2.0 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_11 PF08241.12 gi|48477790|ref|YP_023496.1| - 9e-05 23.1 0.0 0.00015 22.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|48477790|ref|YP_023496.1| - 0.00017 21.5 0.0 0.00026 20.9 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|48477790|ref|YP_023496.1| - 0.0042 17.8 0.0 0.0076 17.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|48477790|ref|YP_023496.1| - 0.046 13.4 0.0 0.064 12.9 0.0 1.4 1 1 0 1 1 1 0 Conserved hypothetical protein 95 N6-adenineMlase PF10237.9 gi|48477790|ref|YP_023496.1| - 0.091 12.6 0.2 0.18 11.6 0.2 1.5 1 1 0 1 1 1 0 Probable N6-adenine methyltransferase UbiA PF01040.18 gi|48477792|ref|YP_023498.1| - 9.9e-48 162.6 23.2 1.2e-47 162.3 22.6 1.4 1 1 0 1 1 1 1 UbiA prenyltransferase family LSM PF01423.22 gi|48477793|ref|YP_023499.1| - 3.2e-21 74.8 0.1 3.5e-21 74.6 0.1 1.0 1 0 0 1 1 1 1 LSM domain SART-1 PF03343.13 gi|48477793|ref|YP_023499.1| - 0.12 11.0 0.3 0.12 10.9 0.3 1.0 1 0 0 1 1 1 0 SART-1 family Med9 PF07544.13 gi|48477794|ref|YP_023500.1| - 0.00071 19.6 0.1 0.00073 19.6 0.1 1.0 1 0 0 1 1 1 1 RNA polymerase II transcription mediator complex subunit 9 DUF4349 PF14257.6 gi|48477794|ref|YP_023500.1| - 0.014 14.8 0.2 0.015 14.7 0.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4349) Helo_like_N PF17111.5 gi|48477794|ref|YP_023500.1| - 0.035 13.5 0.2 0.042 13.2 0.2 1.0 1 0 0 1 1 1 0 Fungal N-terminal domain of STAND proteins SlyX PF04102.12 gi|48477794|ref|YP_023500.1| - 0.04 14.5 0.1 0.045 14.4 0.1 1.0 1 0 0 1 1 1 0 SlyX DUF1664 PF07889.12 gi|48477794|ref|YP_023500.1| - 0.059 13.4 0.3 0.06 13.4 0.3 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) TLV_coat PF00429.19 gi|48477794|ref|YP_023500.1| - 0.16 10.6 0.1 0.19 10.4 0.1 1.0 1 0 0 1 1 1 0 ENV polyprotein (coat polyprotein) YjfB_motility PF14070.6 gi|48477794|ref|YP_023500.1| - 0.17 12.1 0.1 0.23 11.6 0.1 1.2 1 0 0 1 1 1 0 Putative motility protein ECR1_N PF14382.6 gi|48477795|ref|YP_023501.1| - 5.7e-07 29.2 0.0 1.6e-06 27.8 0.0 1.8 2 0 0 2 2 2 1 Exosome complex exonuclease RRP4 N-terminal region EXOSC1 PF10447.9 gi|48477795|ref|YP_023501.1| - 0.0065 17.1 0.1 0.04 14.5 0.1 2.0 1 1 1 2 2 2 1 Exosome component EXOSC1/CSL4 PHF5 PF03660.14 gi|48477795|ref|YP_023501.1| - 0.022 14.9 0.3 0.038 14.2 0.3 1.4 1 0 0 1 1 1 0 PHF5-like protein A2L_zn_ribbon PF08792.10 gi|48477795|ref|YP_023501.1| - 0.034 13.9 1.7 0.072 12.8 1.7 1.5 1 0 0 1 1 1 0 A2L zinc ribbon domain Prok-RING_1 PF14446.6 gi|48477795|ref|YP_023501.1| - 0.065 13.2 0.5 0.12 12.3 0.5 1.4 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 PHD PF00628.29 gi|48477795|ref|YP_023501.1| - 0.22 11.4 2.1 0.38 10.7 2.1 1.4 1 0 0 1 1 1 0 PHD-finger DUF5591 PF17884.1 gi|48477796|ref|YP_023502.1| - 6.5e-45 152.7 0.5 1.2e-44 151.9 0.5 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF5591) TGT PF01702.18 gi|48477796|ref|YP_023502.1| - 3.1e-07 29.9 0.1 0.00038 19.7 0.0 2.3 1 1 1 2 2 2 2 Queuine tRNA-ribosyltransferase PUA PF01472.20 gi|48477796|ref|YP_023502.1| - 5.7e-05 23.0 0.1 0.00014 21.7 0.1 1.7 1 0 0 1 1 1 1 PUA domain TGT_C2 PF14810.6 gi|48477796|ref|YP_023502.1| - 0.00049 20.2 0.1 0.0031 17.6 0.1 2.4 2 0 0 2 2 2 1 Patch-forming domain C2 of tRNA-guanine transglycosylase Amidohydro_1 PF01979.20 gi|48477797|ref|YP_023503.1| - 8.7e-62 209.4 0.0 1e-61 209.2 0.0 1.0 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|48477797|ref|YP_023503.1| - 2.5e-14 53.6 0.0 5.3e-09 36.1 0.0 2.1 2 0 0 2 2 2 2 Amidohydrolase family TatD_DNase PF01026.21 gi|48477797|ref|YP_023503.1| - 0.089 12.1 0.0 0.13 11.6 0.0 1.3 1 0 0 1 1 1 0 TatD related DNase AhpC-TSA PF00578.21 gi|48477799|ref|YP_023505.1| - 2.5e-37 127.6 0.0 3.1e-37 127.2 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|48477799|ref|YP_023505.1| - 4e-20 72.0 0.0 5.5e-20 71.6 0.0 1.1 1 0 0 1 1 1 1 Redoxin 1-cysPrx_C PF10417.9 gi|48477799|ref|YP_023505.1| - 7.4e-14 51.3 0.0 1.1e-13 50.7 0.0 1.3 1 0 0 1 1 1 1 C-terminal domain of 1-Cys peroxiredoxin SCO1-SenC PF02630.14 gi|48477799|ref|YP_023505.1| - 0.073 13.0 0.0 0.13 12.2 0.0 1.4 1 1 0 1 1 1 0 SCO1/SenC Aldo_ket_red PF00248.21 gi|48477800|ref|YP_023506.1| - 1.4e-60 205.0 1.5 3.8e-59 200.3 1.5 2.0 1 1 0 1 1 1 1 Aldo/keto reductase family ABC_tran PF00005.27 gi|48477801|ref|YP_023507.1| - 2e-24 86.6 0.0 3.7e-24 85.8 0.0 1.4 2 0 0 2 2 1 1 ABC transporter AAA_21 PF13304.6 gi|48477801|ref|YP_023507.1| - 1.4e-12 48.0 0.0 3e-06 27.3 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|48477801|ref|YP_023507.1| - 6.4e-05 22.5 0.2 0.00065 19.2 0.2 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|48477801|ref|YP_023507.1| - 0.00021 21.9 0.0 0.00042 20.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|48477801|ref|YP_023507.1| - 0.00033 20.5 0.0 0.013 15.2 0.0 2.3 1 1 1 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|48477801|ref|YP_023507.1| - 0.0013 19.1 0.0 0.0023 18.2 0.0 1.5 1 0 0 1 1 1 1 AAA domain ABC_ATPase PF09818.9 gi|48477801|ref|YP_023507.1| - 0.0023 16.8 0.6 0.3 9.8 0.0 2.1 2 0 0 2 2 2 2 Predicted ATPase of the ABC class AAA_29 PF13555.6 gi|48477801|ref|YP_023507.1| - 0.0025 17.5 0.2 0.0055 16.4 0.2 1.6 1 1 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|48477801|ref|YP_023507.1| - 0.0027 17.6 0.1 0.014 15.3 0.0 2.0 2 0 0 2 2 2 1 RsgA GTPase AAA_24 PF13479.6 gi|48477801|ref|YP_023507.1| - 0.01 15.6 0.1 1.8 8.2 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.6 gi|48477801|ref|YP_023507.1| - 0.011 16.1 0.0 0.014 15.8 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain AAA_13 PF13166.6 gi|48477801|ref|YP_023507.1| - 0.011 14.4 0.0 0.12 11.0 0.0 2.0 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.22 gi|48477801|ref|YP_023507.1| - 0.018 14.2 0.2 0.042 13.0 0.0 1.6 2 0 0 2 2 2 0 NB-ARC domain DUF3584 PF12128.8 gi|48477801|ref|YP_023507.1| - 0.02 12.4 0.0 0.031 11.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) NACHT PF05729.12 gi|48477801|ref|YP_023507.1| - 0.03 14.2 0.0 0.049 13.5 0.0 1.4 1 0 0 1 1 1 0 NACHT domain SbcCD_C PF13558.6 gi|48477801|ref|YP_023507.1| - 0.063 13.5 0.0 1.1 9.6 0.0 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_30 PF13604.6 gi|48477801|ref|YP_023507.1| - 0.077 12.7 0.0 0.39 10.4 0.0 1.9 2 0 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.23 gi|48477801|ref|YP_023507.1| - 0.081 13.0 0.0 0.16 12.0 0.0 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_28 PF13521.6 gi|48477801|ref|YP_023507.1| - 0.092 13.0 0.0 0.21 11.8 0.0 1.6 2 0 0 2 2 2 0 AAA domain MobB PF03205.14 gi|48477801|ref|YP_023507.1| - 0.094 12.6 0.1 0.21 11.5 0.1 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B ABC2_membrane PF01061.24 gi|48477802|ref|YP_023508.1| - 9.5e-09 35.0 25.2 9.5e-09 35.0 25.2 1.9 1 1 1 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|48477802|ref|YP_023508.1| - 3.9 6.5 34.3 0.49 9.4 30.1 1.5 1 1 0 1 1 1 0 ABC-2 family transporter protein YpmT PF17431.2 gi|48477803|ref|YP_023509.1| - 0.003 17.5 0.2 0.0039 17.2 0.2 1.2 1 0 0 1 1 1 1 Uncharacterized YmpT-like SLATT_5 PF18160.1 gi|48477803|ref|YP_023509.1| - 0.094 12.0 0.6 0.099 12.0 0.6 1.0 1 0 0 1 1 1 0 SMODS and SLOG-associating 2TM effector domain family 5 OTCace PF00185.24 gi|48477804|ref|YP_023510.1| - 7.1e-56 188.6 0.0 1.8e-55 187.3 0.0 1.6 2 0 0 2 2 2 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain OTCace_N PF02729.21 gi|48477804|ref|YP_023510.1| - 4.2e-43 146.9 0.1 5.8e-43 146.5 0.1 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain MFS_1 PF07690.16 gi|48477805|ref|YP_023511.1| - 6.1e-38 130.6 50.2 5e-28 98.1 23.6 2.4 1 1 0 2 2 2 2 Major Facilitator Superfamily Pyr_redox_2 PF07992.14 gi|48477806|ref|YP_023512.1| - 7.3e-55 186.3 6.1 8.4e-55 186.1 6.1 1.0 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|48477806|ref|YP_023512.1| - 1.2e-27 97.0 8.1 5.5e-22 78.4 0.9 2.1 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|48477806|ref|YP_023512.1| - 4.3e-15 56.0 7.5 4.4e-11 43.2 0.1 3.6 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|48477806|ref|YP_023512.1| - 1.1e-11 44.5 13.5 2.1e-09 37.0 2.3 4.1 3 1 2 5 5 5 2 FAD binding domain FAD_oxidored PF12831.7 gi|48477806|ref|YP_023512.1| - 1.1e-10 41.4 7.0 7.5e-10 38.7 0.1 2.9 2 1 1 3 3 3 1 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|48477806|ref|YP_023512.1| - 1.1e-09 37.6 5.3 4.2e-05 22.4 1.4 3.7 4 0 0 4 4 4 3 HI0933-like protein Thi4 PF01946.17 gi|48477806|ref|YP_023512.1| - 3.1e-08 33.1 1.2 6e-07 28.9 0.1 2.6 3 0 0 3 3 3 1 Thi4 family DAO PF01266.24 gi|48477806|ref|YP_023512.1| - 3.3e-07 30.2 15.2 2.2e-05 24.2 2.4 3.9 3 1 1 4 4 4 2 FAD dependent oxidoreductase K_oxygenase PF13434.6 gi|48477806|ref|YP_023512.1| - 5.9e-06 25.6 0.3 0.0027 16.9 0.0 3.0 2 1 1 3 3 3 1 L-lysine 6-monooxygenase (NADPH-requiring) NAD_binding_8 PF13450.6 gi|48477806|ref|YP_023512.1| - 6.5e-06 26.3 3.5 3.9e-05 23.8 0.4 2.4 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain GIDA PF01134.22 gi|48477806|ref|YP_023512.1| - 9.5e-06 24.9 18.7 5.4e-05 22.4 2.2 4.6 3 2 1 5 5 5 1 Glucose inhibited division protein A AlaDh_PNT_C PF01262.21 gi|48477806|ref|YP_023512.1| - 1.3e-05 24.6 0.3 0.0022 17.3 0.1 2.3 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain FAD_binding_3 PF01494.19 gi|48477806|ref|YP_023512.1| - 1.4e-05 24.6 1.3 0.0013 18.1 0.0 2.6 2 1 0 2 2 2 1 FAD binding domain IlvN PF07991.12 gi|48477806|ref|YP_023512.1| - 0.00017 21.2 0.2 0.29 10.7 0.1 2.5 2 0 0 2 2 2 2 Acetohydroxy acid isomeroreductase, NADPH-binding domain Trp_halogenase PF04820.14 gi|48477806|ref|YP_023512.1| - 0.0018 17.2 3.3 0.045 12.6 0.2 2.2 2 0 0 2 2 2 2 Tryptophan halogenase MCRA PF06100.11 gi|48477806|ref|YP_023512.1| - 0.0019 17.1 0.7 0.012 14.4 0.1 2.1 2 0 0 2 2 2 1 MCRA family NAD_binding_7 PF13241.6 gi|48477806|ref|YP_023512.1| - 0.0085 16.5 0.2 2.1 8.8 0.0 2.3 2 0 0 2 2 2 1 Putative NAD(P)-binding Lycopene_cycl PF05834.12 gi|48477806|ref|YP_023512.1| - 0.011 14.8 0.5 0.024 13.7 0.4 1.5 1 1 0 1 1 1 0 Lycopene cyclase protein DUF2190 PF09956.9 gi|48477806|ref|YP_023512.1| - 0.017 15.6 0.4 0.043 14.3 0.4 1.7 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2190) FMO-like PF00743.19 gi|48477806|ref|YP_023512.1| - 0.087 11.2 0.2 0.22 9.9 0.0 1.7 2 0 0 2 2 2 0 Flavin-binding monooxygenase-like MbeB_N PF04837.12 gi|48477806|ref|YP_023512.1| - 0.096 13.0 0.2 0.18 12.1 0.2 1.4 1 0 0 1 1 1 0 MbeB-like, N-term conserved region 2-Hacid_dh_C PF02826.19 gi|48477806|ref|YP_023512.1| - 0.098 12.0 0.2 7.8 5.8 0.1 2.2 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.23 gi|48477806|ref|YP_023512.1| - 0.12 12.3 0.5 11 5.9 0.0 2.5 2 1 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Cpn60_TCP1 PF00118.24 gi|48477807|ref|YP_023513.1| - 1e-184 614.8 23.5 1.1e-184 614.6 23.5 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family NOP5NT PF08156.13 gi|48477807|ref|YP_023513.1| - 2.5 8.5 5.8 2.1 8.8 0.1 3.4 4 0 0 4 4 4 0 NOP5NT (NUC127) domain Thy1 PF02511.15 gi|48477808|ref|YP_023514.1| - 6.7e-40 136.9 0.2 5.3e-22 78.5 0.2 2.2 2 0 0 2 2 2 2 Thymidylate synthase complementing protein 3Beta_HSD PF01073.19 gi|48477809|ref|YP_023515.1| - 2.1e-15 56.5 1.1 5.2e-12 45.4 1.4 2.4 1 1 1 2 2 2 2 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_10 PF13460.6 gi|48477809|ref|YP_023515.1| - 3.5e-10 40.1 0.0 5.2e-10 39.5 0.0 1.2 1 0 0 1 1 1 1 NAD(P)H-binding Epimerase PF01370.21 gi|48477809|ref|YP_023515.1| - 1.9e-09 37.4 0.0 9.1e-09 35.1 0.0 1.9 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.17 gi|48477809|ref|YP_023515.1| - 1.6e-06 27.5 0.0 2.3e-05 23.7 0.0 2.0 1 1 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.12 gi|48477809|ref|YP_023515.1| - 7.5e-05 22.0 1.1 0.15 11.2 0.2 2.8 1 1 2 3 3 3 2 Male sterility protein DUF1940 PF09155.10 gi|48477810|ref|YP_023516.1| - 2.9e-68 228.4 2.4 3.3e-68 228.3 2.4 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1940) HSP20 PF00011.21 gi|48477811|ref|YP_023517.1| - 6.9e-15 55.0 0.1 8.1e-15 54.8 0.1 1.1 1 0 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|48477811|ref|YP_023517.1| - 1.3e-05 24.7 0.0 2.2e-05 23.9 0.0 1.4 1 0 0 1 1 1 1 HSP20-like domain found in ArsA CS PF04969.16 gi|48477811|ref|YP_023517.1| - 0.0054 17.7 0.0 1.6 9.8 0.0 2.2 2 0 0 2 2 2 2 CS domain ABC1 PF03109.16 gi|48477812|ref|YP_023518.1| - 3.9e-18 65.7 0.0 8.7e-18 64.6 0.0 1.5 1 0 0 1 1 1 1 ABC1 family Pkinase PF00069.25 gi|48477812|ref|YP_023518.1| - 0.002 17.5 0.3 0.0036 16.7 0.3 1.3 1 0 0 1 1 1 1 Protein kinase domain APH PF01636.23 gi|48477812|ref|YP_023518.1| - 0.079 12.9 0.1 0.13 12.2 0.1 1.3 1 0 0 1 1 1 0 Phosphotransferase enzyme family Rad51 PF08423.11 gi|48477813|ref|YP_023519.1| - 2.1e-84 282.8 0.0 2.7e-84 282.4 0.0 1.1 1 0 0 1 1 1 1 Rad51 RecA PF00154.21 gi|48477813|ref|YP_023519.1| - 1.2e-09 38.0 0.1 1.9e-09 37.4 0.1 1.3 1 0 0 1 1 1 1 recA bacterial DNA recombination protein HHH_5 PF14520.6 gi|48477813|ref|YP_023519.1| - 3.4e-08 34.0 1.4 9.4e-08 32.6 1.4 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix domain ATPase PF06745.13 gi|48477813|ref|YP_023519.1| - 3.5e-07 29.8 0.1 6.9e-07 28.8 0.1 1.6 1 1 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|48477813|ref|YP_023519.1| - 1.5e-05 24.7 0.0 2.3e-05 24.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain HHH PF00633.23 gi|48477813|ref|YP_023519.1| - 0.00031 20.5 0.5 0.17 11.8 0.0 2.6 2 0 0 2 2 2 2 Helix-hairpin-helix motif HHH_2 PF12826.7 gi|48477813|ref|YP_023519.1| - 0.00081 19.4 0.1 0.0032 17.5 0.1 2.0 2 0 0 2 2 2 1 Helix-hairpin-helix motif Cdd1 PF11731.8 gi|48477813|ref|YP_023519.1| - 0.0039 17.4 0.0 0.0072 16.5 0.0 1.4 1 0 0 1 1 1 1 Pathogenicity locus AAA_22 PF13401.6 gi|48477813|ref|YP_023519.1| - 0.011 16.0 0.0 0.026 14.8 0.0 1.6 2 0 0 2 2 2 0 AAA domain IMS_HHH PF11798.8 gi|48477813|ref|YP_023519.1| - 0.014 15.7 0.0 0.056 13.8 0.0 2.1 2 0 0 2 2 2 0 IMS family HHH motif BAF PF02961.14 gi|48477813|ref|YP_023519.1| - 0.048 14.1 0.1 0.28 11.6 0.0 2.3 3 0 0 3 3 3 0 Barrier to autointegration factor AAA_24 PF13479.6 gi|48477813|ref|YP_023519.1| - 0.11 12.3 0.0 0.19 11.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain Gp_dh_C PF02800.20 gi|48477814|ref|YP_023520.1| - 5.8e-19 68.2 0.0 9e-19 67.6 0.0 1.3 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DapB_N PF01113.20 gi|48477814|ref|YP_023520.1| - 1.4e-10 41.3 0.1 2.9e-10 40.3 0.1 1.5 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Gp_dh_N PF00044.24 gi|48477814|ref|YP_023520.1| - 2.8e-06 27.6 0.6 1.4e-05 25.4 0.1 2.4 2 1 0 2 2 2 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|48477814|ref|YP_023520.1| - 0.002 17.5 1.0 0.3 10.4 1.0 2.4 1 1 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Acetyltransf_1 PF00583.25 gi|48477815|ref|YP_023521.1| - 3.6e-15 56.2 0.0 4.4e-15 55.9 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|48477815|ref|YP_023521.1| - 1.1e-11 45.0 0.0 1.6e-11 44.4 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|48477815|ref|YP_023521.1| - 2.9e-11 43.4 0.0 4e-11 43.0 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|48477815|ref|YP_023521.1| - 1.3e-05 25.0 0.0 1.8e-05 24.6 0.0 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_4 PF13420.7 gi|48477815|ref|YP_023521.1| - 2.2e-05 24.6 0.0 3.3e-05 24.1 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.6 gi|48477815|ref|YP_023521.1| - 0.00029 20.5 0.0 0.00043 20.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|48477815|ref|YP_023521.1| - 0.00095 19.9 0.0 0.0036 18.0 0.0 1.8 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.7 gi|48477815|ref|YP_023521.1| - 0.064 13.4 0.0 0.073 13.2 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain AdoMet_Synthase PF01941.19 gi|48477816|ref|YP_023522.1| - 8.8e-170 564.7 7.4 1e-169 564.6 7.4 1.0 1 0 0 1 1 1 1 S-adenosylmethionine synthetase (AdoMet synthetase) S-AdoMet_synt_N PF00438.20 gi|48477816|ref|YP_023522.1| - 0.05 14.3 0.2 1.3 9.8 0.0 3.0 3 0 0 3 3 3 0 S-adenosylmethionine synthetase, N-terminal domain AICARFT_IMPCHas PF01808.18 gi|48477817|ref|YP_023523.1| - 3.1e-95 319.0 0.0 3.8e-95 318.7 0.0 1.1 1 0 0 1 1 1 1 AICARFT/IMPCHase bienzyme MGS PF02142.22 gi|48477817|ref|YP_023523.1| - 6.3e-14 51.9 0.0 1.8e-13 50.5 0.0 1.8 1 0 0 1 1 1 1 MGS-like domain SPP PF06550.11 gi|48477818|ref|YP_023524.1| - 1e-58 199.0 34.9 1.2e-58 198.8 34.9 1.0 1 0 0 1 1 1 1 Signal-peptide peptidase, presenilin aspartyl protease Peptidase_A22B PF04258.13 gi|48477818|ref|YP_023524.1| - 3.9e-06 26.6 24.5 2.4e-05 24.0 24.5 2.3 1 1 0 1 1 1 1 Signal peptide peptidase DUF4519 PF15012.6 gi|48477818|ref|YP_023524.1| - 0.15 12.3 0.1 0.15 12.3 0.1 3.2 3 0 0 3 3 3 0 Domain of unknown function (DUF4519) Topoisom_bac PF01131.20 gi|48477819|ref|YP_023525.1| - 2.4e-115 385.9 0.4 3.1e-115 385.5 0.4 1.1 1 0 0 1 1 1 1 DNA topoisomerase Toprim PF01751.22 gi|48477819|ref|YP_023525.1| - 3.9e-15 55.9 0.8 1.1e-14 54.5 0.1 2.2 3 0 0 3 3 3 1 Toprim domain zf-C4_Topoisom PF01396.19 gi|48477819|ref|YP_023525.1| - 5.1e-14 51.8 1.1 5.1e-14 51.8 1.1 3.7 3 1 0 3 3 3 1 Topoisomerase DNA binding C4 zinc finger Toprim_4 PF13662.6 gi|48477819|ref|YP_023525.1| - 0.063 13.8 0.1 0.78 10.2 0.0 2.3 2 0 0 2 2 2 0 Toprim domain zf-ribbon_3 PF13248.6 gi|48477819|ref|YP_023525.1| - 1.6 8.2 4.8 0.39 10.2 0.2 2.4 2 0 0 2 2 2 0 zinc-ribbon domain zf-RVT PF13966.6 gi|48477820|ref|YP_023526.1| - 0.059 14.1 0.1 0.071 13.8 0.1 1.2 1 0 0 1 1 1 0 zinc-binding in reverse transcriptase MFS_1 PF07690.16 gi|48477822|ref|YP_023528.1| - 1.2e-10 40.9 19.7 1.4e-10 40.7 19.7 1.1 1 0 0 1 1 1 1 Major Facilitator Superfamily MFS_3 PF05977.13 gi|48477822|ref|YP_023528.1| - 0.0015 17.0 6.4 0.0019 16.7 6.4 1.1 1 0 0 1 1 1 1 Transmembrane secretion effector Phage_holin_3_6 PF07332.11 gi|48477822|ref|YP_023528.1| - 0.23 11.5 0.1 0.23 11.5 0.1 3.1 1 1 2 3 3 3 0 Putative Actinobacterial Holin-X, holin superfamily III DUF962 PF06127.11 gi|48477822|ref|YP_023528.1| - 0.57 10.3 4.4 0.73 10.0 1.5 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF962) DUF373 PF04123.13 gi|48477822|ref|YP_023528.1| - 0.6 9.5 17.1 1.3 8.4 16.9 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF373) MgtE_N PF03448.17 gi|48477823|ref|YP_023529.1| - 0.014 16.0 3.5 0.18 12.4 0.5 2.2 1 1 1 2 2 2 0 MgtE intracellular N domain Spore_GerAC PF05504.11 gi|48477823|ref|YP_023529.1| - 0.075 13.3 0.9 0.11 12.7 0.9 1.3 1 1 0 1 1 1 0 Spore germination B3/ GerAC like, C-terminal CSTF_C PF14304.6 gi|48477823|ref|YP_023529.1| - 0.6 9.7 2.8 21 4.8 0.3 3.0 3 0 0 3 3 3 0 Transcription termination and cleavage factor C-terminal AIM24 PF01987.17 gi|48477824|ref|YP_023530.1| - 4.7e-51 173.5 0.4 5.2e-51 173.3 0.4 1.0 1 0 0 1 1 1 1 Mitochondrial biogenesis AIM24 Cas_Cas6 PF01881.16 gi|48477825|ref|YP_023531.1| - 1.9e-13 51.2 2.5 3.3e-13 50.4 2.5 1.4 1 0 0 1 1 1 1 CRISPR associated protein Cas6 DUF4488 PF14869.6 gi|48477825|ref|YP_023531.1| - 0.48 10.3 5.8 0.28 11.1 2.1 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF4488) HTH_5 PF01022.20 gi|48477826|ref|YP_023532.1| - 1.2e-08 34.7 0.0 2.1e-08 33.9 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|48477826|ref|YP_023532.1| - 4.6e-06 26.4 0.0 1e-05 25.3 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|48477826|ref|YP_023532.1| - 1.8e-05 24.5 0.0 3.8e-05 23.5 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|48477826|ref|YP_023532.1| - 4.2e-05 23.0 0.2 7.4e-05 22.2 0.2 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|48477826|ref|YP_023532.1| - 0.00018 21.4 0.1 0.00032 20.6 0.1 1.4 1 0 0 1 1 1 1 MarR family TFIIE_alpha PF02002.17 gi|48477826|ref|YP_023532.1| - 0.00032 20.5 0.9 0.0012 18.7 0.8 1.9 2 0 0 2 2 2 1 TFIIE alpha subunit HTH_38 PF13936.6 gi|48477826|ref|YP_023532.1| - 0.0012 18.5 0.0 0.0023 17.6 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.6 gi|48477826|ref|YP_023532.1| - 0.0019 18.7 0.0 0.0037 17.7 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain Fe_dep_repress PF01325.19 gi|48477826|ref|YP_023532.1| - 0.0024 18.0 0.0 0.0051 17.0 0.0 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_Crp_2 PF13545.6 gi|48477826|ref|YP_023532.1| - 0.0024 17.8 0.0 0.0041 17.1 0.0 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 gi|48477826|ref|YP_023532.1| - 0.0024 17.2 0.0 0.0041 16.5 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 Phage_rep_org_N PF09681.10 gi|48477826|ref|YP_023532.1| - 0.003 17.5 0.6 0.0054 16.7 0.6 1.5 1 0 0 1 1 1 1 N-terminal phage replisome organiser (Phage_rep_org_N) HTH_36 PF13730.6 gi|48477826|ref|YP_023532.1| - 0.0052 16.7 0.1 0.014 15.3 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain DUF4423 PF14394.6 gi|48477826|ref|YP_023532.1| - 0.0074 16.0 0.1 0.011 15.4 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) HTH_IclR PF09339.10 gi|48477826|ref|YP_023532.1| - 0.012 15.4 0.0 0.02 14.7 0.0 1.2 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_AraC PF00165.23 gi|48477826|ref|YP_023532.1| - 0.017 15.2 0.0 0.039 14.1 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix proteins, AraC family HTH_AsnC-type PF13404.6 gi|48477826|ref|YP_023532.1| - 0.018 14.8 0.0 0.037 13.9 0.0 1.5 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain Penicillinase_R PF03965.16 gi|48477826|ref|YP_023532.1| - 0.023 15.1 0.0 0.042 14.2 0.0 1.4 1 0 0 1 1 1 0 Penicillinase repressor HTH_20 PF12840.7 gi|48477826|ref|YP_023532.1| - 0.023 14.8 0.0 0.036 14.1 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_11 PF08279.12 gi|48477826|ref|YP_023532.1| - 0.023 14.6 0.3 0.049 13.6 0.0 1.7 2 0 0 2 2 1 0 HTH domain ArsR PF09824.9 gi|48477826|ref|YP_023532.1| - 0.032 13.8 2.1 0.034 13.7 0.7 1.7 2 0 0 2 2 2 0 ArsR transcriptional regulator HTH_45 PF14947.6 gi|48477826|ref|YP_023532.1| - 0.066 13.2 2.2 0.31 11.1 0.6 2.6 3 0 0 3 3 3 0 Winged helix-turn-helix Rrf2 PF02082.20 gi|48477826|ref|YP_023532.1| - 0.076 13.4 0.1 0.32 11.4 0.1 2.0 1 1 1 2 2 2 0 Transcriptional regulator HTH_29 PF13551.6 gi|48477826|ref|YP_023532.1| - 0.12 12.4 0.0 0.23 11.5 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix DUF296 PF03479.15 gi|48477827|ref|YP_023533.1| - 1.1e-17 64.4 0.0 1.2e-17 64.2 0.0 1.0 1 0 0 1 1 1 1 Plants and Prokaryotes Conserved (PCC) domain Aldose_epim PF01263.20 gi|48477828|ref|YP_023534.1| - 3.9e-35 121.6 0.0 4.9e-35 121.3 0.0 1.1 1 0 0 1 1 1 1 Aldose 1-epimerase DUF3785 PF12653.7 gi|48477828|ref|YP_023534.1| - 0.017 15.2 0.6 0.037 14.1 0.6 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3785) ADH_N PF08240.12 gi|48477829|ref|YP_023535.1| - 1.5e-28 98.9 0.1 2.7e-28 98.0 0.1 1.5 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|48477829|ref|YP_023535.1| - 1.1e-23 83.6 0.0 1.7e-23 83.0 0.0 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 gi|48477829|ref|YP_023535.1| - 5.6e-10 40.4 0.0 8.4e-10 39.8 0.0 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Glu_dehyd_C PF16912.5 gi|48477829|ref|YP_023535.1| - 1e-06 28.4 0.1 1.7e-06 27.7 0.1 1.3 1 0 0 1 1 1 1 Glucose dehydrogenase C-terminus Sugar_tr PF00083.24 gi|48477830|ref|YP_023536.1| - 1.4e-50 172.5 26.3 1.8e-50 172.1 26.3 1.1 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.16 gi|48477830|ref|YP_023536.1| - 1.8e-30 106.0 37.8 3.2e-23 82.2 26.7 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.6 gi|48477830|ref|YP_023536.1| - 0.0016 17.1 5.2 0.0016 17.1 5.2 3.4 3 1 0 4 4 4 2 MFS/sugar transport protein MFS_3 PF05977.13 gi|48477830|ref|YP_023536.1| - 0.4 9.0 4.1 0.061 11.7 0.3 1.5 2 0 0 2 2 2 0 Transmembrane secretion effector Isochorismatase PF00857.20 gi|48477831|ref|YP_023537.1| - 1.1e-10 42.0 0.0 1.3e-10 41.7 0.0 1.1 1 0 0 1 1 1 1 Isochorismatase family Lactamase_B PF00753.27 gi|48477832|ref|YP_023538.1| - 5.1e-17 62.5 0.0 7.3e-17 62.0 0.0 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.6 gi|48477832|ref|YP_023538.1| - 0.0049 16.8 0.1 0.013 15.3 0.1 1.8 1 1 0 1 1 1 1 Beta-lactamase superfamily domain HTH_8 PF02954.19 gi|48477832|ref|YP_023538.1| - 0.049 13.4 0.0 0.36 10.6 0.0 2.1 2 0 0 2 2 2 0 Bacterial regulatory protein, Fis family Glyco_transf_64 PF09258.10 gi|48477832|ref|YP_023538.1| - 0.083 12.2 0.0 0.17 11.2 0.0 1.4 2 0 0 2 2 2 0 Glycosyl transferase family 64 domain TENA_THI-4 PF03070.16 gi|48477833|ref|YP_023539.1| - 0.0068 16.2 0.0 0.01 15.7 0.0 1.3 1 0 0 1 1 1 1 TENA/THI-4/PQQC family LuxE PF04443.12 gi|48477833|ref|YP_023539.1| - 0.0071 15.4 7.0 0.0081 15.2 7.0 1.1 1 0 0 1 1 1 1 Acyl-protein synthetase, LuxE Acetyltransf_10 PF13673.7 gi|48477835|ref|YP_023541.1| - 4.3e-06 26.7 0.0 5e-06 26.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|48477835|ref|YP_023541.1| - 4.3e-05 23.7 0.1 5.2e-05 23.4 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family ABC_tran PF00005.27 gi|48477836|ref|YP_023542.1| - 1.5e-22 80.5 0.0 2.6e-22 79.8 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|48477836|ref|YP_023542.1| - 1.6e-08 34.8 1.7 4.1e-05 23.5 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SbcCD_C PF13558.6 gi|48477836|ref|YP_023542.1| - 2.4e-07 30.9 0.1 1.1e-06 28.7 0.1 1.9 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit SMC_N PF02463.19 gi|48477836|ref|YP_023542.1| - 6.8e-07 28.9 0.7 9.8e-05 21.9 0.0 2.1 1 1 1 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|48477836|ref|YP_023542.1| - 0.00023 21.8 0.1 0.00029 21.4 0.1 1.4 1 0 0 1 1 1 1 AAA domain AAA_13 PF13166.6 gi|48477836|ref|YP_023542.1| - 0.00039 19.2 0.5 0.0022 16.7 0.3 1.9 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|48477836|ref|YP_023542.1| - 0.0038 17.5 0.8 0.041 14.1 0.8 2.0 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|48477836|ref|YP_023542.1| - 0.018 14.8 0.0 0.17 11.6 0.0 2.0 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|48477836|ref|YP_023542.1| - 0.024 14.4 0.1 0.047 13.4 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|48477836|ref|YP_023542.1| - 0.026 14.4 0.0 0.045 13.7 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA_18 PF13238.6 gi|48477836|ref|YP_023542.1| - 0.03 14.9 0.1 0.051 14.1 0.1 1.5 1 1 0 1 1 1 0 AAA domain AAA PF00004.29 gi|48477836|ref|YP_023542.1| - 0.042 14.3 0.1 0.29 11.5 0.1 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) ATPase_2 PF01637.18 gi|48477836|ref|YP_023542.1| - 0.043 13.7 3.3 0.06 13.2 0.8 2.2 1 1 1 2 2 2 0 ATPase domain predominantly from Archaea ATP-synt_ab PF00006.25 gi|48477836|ref|YP_023542.1| - 0.081 12.6 0.0 0.081 12.6 0.0 1.2 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_24 PF13479.6 gi|48477836|ref|YP_023542.1| - 0.12 12.0 0.0 0.14 11.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain DLIC PF05783.11 gi|48477836|ref|YP_023542.1| - 0.12 11.1 0.0 0.17 10.6 0.0 1.1 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) AAA_33 PF13671.6 gi|48477836|ref|YP_023542.1| - 0.14 12.3 0.6 0.78 9.9 0.6 1.9 1 1 0 1 1 1 0 AAA domain AAA_14 PF13173.6 gi|48477836|ref|YP_023542.1| - 0.15 12.1 1.2 3.8 7.6 0.1 2.7 2 1 1 3 3 3 0 AAA domain NB-ARC PF00931.22 gi|48477836|ref|YP_023542.1| - 0.2 10.8 0.2 0.51 9.5 0.2 1.5 1 1 0 1 1 1 0 NB-ARC domain ABC_tran PF00005.27 gi|48477837|ref|YP_023543.1| - 5.8e-25 88.4 0.0 8.4e-25 87.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|48477837|ref|YP_023543.1| - 2.6e-12 47.1 0.0 4.6e-12 46.3 0.0 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|48477837|ref|YP_023543.1| - 2.5e-07 30.8 2.0 0.00043 20.2 0.3 2.3 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|48477837|ref|YP_023543.1| - 9.8e-06 26.2 0.1 1.6e-05 25.5 0.1 1.5 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|48477837|ref|YP_023543.1| - 0.00079 20.0 0.0 0.0015 19.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|48477837|ref|YP_023543.1| - 0.0064 16.2 0.0 0.013 15.2 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|48477837|ref|YP_023543.1| - 0.011 15.2 0.0 0.13 11.7 0.0 2.1 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|48477837|ref|YP_023543.1| - 0.033 14.6 0.0 0.054 13.9 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain RsgA_GTPase PF03193.16 gi|48477837|ref|YP_023543.1| - 0.033 14.1 0.0 0.06 13.3 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase ATPase_2 PF01637.18 gi|48477837|ref|YP_023543.1| - 0.038 13.9 1.5 0.04 13.8 0.3 1.6 2 1 0 2 2 2 0 ATPase domain predominantly from Archaea AAA_22 PF13401.6 gi|48477837|ref|YP_023543.1| - 0.04 14.2 0.1 0.36 11.1 0.0 2.1 2 0 0 2 2 2 0 AAA domain TsaE PF02367.17 gi|48477837|ref|YP_023543.1| - 0.041 13.9 0.0 0.068 13.2 0.0 1.3 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE ABC_ATPase PF09818.9 gi|48477837|ref|YP_023543.1| - 0.051 12.4 0.5 5 5.8 0.1 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class IstB_IS21 PF01695.17 gi|48477837|ref|YP_023543.1| - 0.064 13.0 0.0 12 5.6 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein cobW PF02492.19 gi|48477837|ref|YP_023543.1| - 0.08 12.5 0.1 0.14 11.8 0.1 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain SbcCD_C PF13558.6 gi|48477837|ref|YP_023543.1| - 0.087 13.1 0.0 0.15 12.3 0.0 1.3 1 0 0 1 1 1 0 Putative exonuclease SbcCD, C subunit PduV-EutP PF10662.9 gi|48477837|ref|YP_023543.1| - 0.1 12.3 0.0 0.19 11.5 0.0 1.4 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation NB-ARC PF00931.22 gi|48477837|ref|YP_023543.1| - 0.17 11.1 0.0 0.27 10.4 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain NACHT PF05729.12 gi|48477837|ref|YP_023543.1| - 0.2 11.5 0.0 0.34 10.8 0.0 1.3 1 0 0 1 1 1 0 NACHT domain AA_permease_2 PF13520.6 gi|48477838|ref|YP_023544.1| - 5.8e-25 88.0 53.3 7e-25 87.7 53.3 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|48477838|ref|YP_023544.1| - 9.3e-17 60.8 52.7 1.6e-16 60.0 52.7 1.3 1 1 0 1 1 1 1 Amino acid permease Phage_integrase PF00589.22 gi|48477839|ref|YP_023545.1| - 1.3e-16 60.9 0.2 1.7e-16 60.5 0.2 1.1 1 0 0 1 1 1 1 Phage integrase family Pox_RNA_pol_35 PF03396.15 gi|48477839|ref|YP_023545.1| - 0.0071 15.6 0.0 0.0082 15.4 0.0 1.0 1 0 0 1 1 1 1 Poxvirus DNA-directed RNA polymerase, 35 kD subunit Peptidase_S41 PF03572.18 gi|48477841|ref|YP_023547.1| - 1.7e-12 47.2 0.0 3.7e-12 46.1 0.0 1.6 1 1 0 1 1 1 1 Peptidase family S41 PDZ_4 PF17816.1 gi|48477841|ref|YP_023547.1| - 0.073 13.5 0.3 0.28 11.6 0.1 2.0 2 0 0 2 2 2 0 PDZ domain MFS_1 PF07690.16 gi|48477843|ref|YP_023549.1| - 4.1e-43 147.7 94.1 8.2e-34 117.1 57.2 1.8 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|48477843|ref|YP_023549.1| - 6.8e-20 71.4 36.8 2e-11 43.4 12.7 2.1 2 0 0 2 2 2 2 Sugar (and other) transporter MFS_3 PF05977.13 gi|48477843|ref|YP_023549.1| - 0.0075 14.7 10.8 0.096 11.1 3.4 2.7 2 1 1 3 3 3 2 Transmembrane secretion effector DDDD PF10161.9 gi|48477843|ref|YP_023549.1| - 0.036 13.8 0.3 0.18 11.6 0.3 2.2 1 0 0 1 1 1 0 Putative mitochondrial precursor protein Peptidase_M20 PF01546.28 gi|48477844|ref|YP_023550.1| - 8.5e-33 113.8 0.1 1.1e-32 113.5 0.1 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|48477844|ref|YP_023550.1| - 3.1e-12 46.4 0.2 6.5e-12 45.3 0.2 1.4 1 0 0 1 1 1 1 Peptidase dimerisation domain HGTP_anticodon PF03129.20 gi|48477844|ref|YP_023550.1| - 0.15 12.3 0.3 2.8 8.1 0.0 2.3 2 0 0 2 2 2 0 Anticodon binding domain Cytomega_TRL10 PF06084.11 gi|48477845|ref|YP_023551.1| - 0.23 11.5 0.5 0.37 10.8 0.5 1.3 1 0 0 1 1 1 0 Cytomegalovirus TRL10 protein Sugar_tr PF00083.24 gi|48477847|ref|YP_023553.1| - 5e-44 150.9 22.1 6.7e-44 150.5 22.1 1.1 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.16 gi|48477847|ref|YP_023553.1| - 5.6e-20 71.6 37.5 1.1e-19 70.6 28.8 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily Hydrolase PF00702.26 gi|48477848|ref|YP_023554.1| - 1.6e-12 48.1 0.0 8.9e-07 29.4 0.0 2.1 1 1 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|48477848|ref|YP_023554.1| - 6.6e-06 26.7 0.0 1.8e-05 25.2 0.0 1.7 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|48477848|ref|YP_023554.1| - 1.2e-05 25.5 2.2 0.038 14.1 0.4 2.3 1 1 1 2 2 2 2 Haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|48477848|ref|YP_023554.1| - 0.00015 21.6 6.2 0.0013 18.6 4.0 2.1 1 1 1 2 2 2 1 haloacid dehalogenase-like hydrolase OrfB_Zn_ribbon PF07282.11 gi|48477849|ref|YP_023555.1| - 0.0054 16.6 0.8 0.01 15.7 0.8 1.3 1 0 0 1 1 1 1 Putative transposase DNA-binding domain DUF2387 PF09526.10 gi|48477849|ref|YP_023555.1| - 3.4 7.9 4.5 0.54 10.4 0.5 1.7 2 0 0 2 2 2 0 Probable metal-binding protein (DUF2387) tRNA_SAD PF07973.14 gi|48477850|ref|YP_023556.1| - 2.6e-08 33.8 0.0 4.6e-08 33.0 0.0 1.4 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain tRNA-synt_2c PF01411.19 gi|48477850|ref|YP_023556.1| - 0.0011 17.6 0.1 0.0019 16.8 0.1 1.3 1 0 0 1 1 1 1 tRNA synthetases class II (A) HupH_C PF04809.13 gi|48477850|ref|YP_023556.1| - 0.088 12.5 0.3 7.4 6.3 0.1 2.5 2 1 1 3 3 3 0 HupH hydrogenase expression protein, C-terminal conserved region CRISPR_Cas2 PF09827.9 gi|48477850|ref|YP_023556.1| - 0.092 12.9 1.0 0.4 10.9 0.3 2.2 1 1 1 2 2 2 0 CRISPR associated protein Cas2 MFS_1 PF07690.16 gi|48477851|ref|YP_023557.1| - 6.7e-36 123.9 57.4 6.1e-35 120.8 48.4 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|48477851|ref|YP_023557.1| - 0.77 8.5 43.7 0.02 13.8 9.2 3.2 1 1 2 3 3 3 0 MFS_1 like family PseudoU_synth_1 PF01416.20 gi|48477852|ref|YP_023558.1| - 1.1e-16 61.3 0.1 6.1e-13 49.2 0.1 2.7 2 1 0 2 2 2 2 tRNA pseudouridine synthase RHH_1 PF01402.21 gi|48477853|ref|YP_023559.1| - 3e-15 55.5 3.2 1.4e-09 37.5 0.2 2.1 2 0 0 2 2 2 2 Ribbon-helix-helix protein, copG family DndE PF08870.11 gi|48477853|ref|YP_023559.1| - 0.0015 18.8 0.4 0.0016 18.6 0.4 1.1 1 0 0 1 1 1 1 DNA sulphur modification protein DndE VapB_antitoxin PF09957.9 gi|48477853|ref|YP_023559.1| - 0.0025 17.7 0.5 0.53 10.2 0.0 2.3 2 0 0 2 2 2 2 Bacterial antitoxin of type II TA system, VapB NA37 PF04245.13 gi|48477853|ref|YP_023559.1| - 0.0033 16.9 1.7 0.0044 16.6 1.7 1.2 1 1 0 1 1 1 1 37-kD nucleoid-associated bacterial protein DnaB_2 PF07261.11 gi|48477853|ref|YP_023559.1| - 0.0078 15.9 1.2 0.13 12.0 1.2 2.1 1 1 0 1 1 1 1 Replication initiation and membrane attachment RuvA_C PF07499.13 gi|48477853|ref|YP_023559.1| - 0.013 15.9 0.0 0.62 10.6 0.0 2.3 2 0 0 2 2 2 0 RuvA, C-terminal domain CENP-X PF09415.10 gi|48477853|ref|YP_023559.1| - 0.016 15.5 1.4 0.28 11.5 0.1 2.2 2 0 0 2 2 2 0 CENP-S associating Centromere protein X PNPase PF03726.14 gi|48477853|ref|YP_023559.1| - 0.039 14.5 0.8 0.039 14.5 0.8 1.8 1 1 0 1 1 1 0 Polyribonucleotide nucleotidyltransferase, RNA binding domain VAPB_antitox PF02697.14 gi|48477853|ref|YP_023559.1| - 0.058 14.2 11.4 0.23 12.2 1.2 2.2 1 1 1 2 2 2 0 Putative antitoxin DUF2497 PF10691.9 gi|48477853|ref|YP_023559.1| - 0.063 13.7 0.1 0.35 11.3 0.1 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF2497) tRNA_synthFbeta PF17759.1 gi|48477854|ref|YP_023560.1| - 5.8e-33 114.1 0.0 1.3e-32 113.0 0.0 1.6 1 0 0 1 1 1 1 Phenylalanyl tRNA synthetase beta chain CLM domain B5 PF03484.15 gi|48477854|ref|YP_023560.1| - 4.1e-12 46.2 0.5 1.2e-11 44.7 0.1 2.0 2 0 0 2 2 2 1 tRNA synthetase B5 domain B3_4 PF03483.17 gi|48477854|ref|YP_023560.1| - 7.9e-12 45.2 0.0 1.5e-11 44.3 0.0 1.4 1 0 0 1 1 1 1 B3/4 domain BORA_N PF15280.6 gi|48477854|ref|YP_023560.1| - 0.2 11.3 0.0 0.31 10.7 0.0 1.2 1 0 0 1 1 1 0 Protein aurora borealis N-terminus HTH_46 PF15977.5 gi|48477855|ref|YP_023561.1| - 0.049 13.6 1.1 0.22 11.5 0.6 2.3 2 0 0 2 2 2 0 Winged helix-turn-helix DNA binding HTH_Crp_2 PF13545.6 gi|48477855|ref|YP_023561.1| - 0.17 11.9 0.0 1.4 9.0 0.1 2.3 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain AA_permease PF00324.21 gi|48477856|ref|YP_023562.1| - 1.5e-09 37.0 46.6 1.5e-09 37.0 46.6 2.4 2 0 0 2 2 2 1 Amino acid permease AA_permease_2 PF13520.6 gi|48477856|ref|YP_023562.1| - 8.1e-09 34.8 83.3 1.3e-07 30.9 83.3 2.0 1 1 0 1 1 1 1 Amino acid permease PMT_2 PF13231.6 gi|48477857|ref|YP_023563.1| - 8.2e-12 45.6 5.3 8.2e-12 45.6 5.3 3.3 3 1 0 3 3 3 1 Dolichyl-phosphate-mannose-protein mannosyltransferase STT3 PF02516.14 gi|48477857|ref|YP_023563.1| - 8.9e-05 21.6 31.2 0.00031 19.8 31.2 1.8 1 1 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit CarboxypepD_reg PF13620.6 gi|48477858|ref|YP_023564.1| - 1.7e-19 69.8 33.4 1.3e-08 35.0 0.1 10.0 11 1 0 11 11 11 5 Carboxypeptidase regulatory-like domain DUF1416 PF07210.12 gi|48477858|ref|YP_023564.1| - 3.9e-06 26.7 0.0 0.3 11.0 0.0 3.8 3 0 0 3 3 3 2 Protein of unknown function (DUF1416) Big_6 PF17936.1 gi|48477858|ref|YP_023564.1| - 3.3e-05 24.1 0.5 1.9 8.8 0.0 5.6 5 0 0 5 5 5 1 Bacterial Ig domain CarbopepD_reg_2 PF13715.6 gi|48477858|ref|YP_023564.1| - 4.4e-05 23.4 20.8 0.015 15.3 0.2 6.7 5 1 1 6 6 6 2 CarboxypepD_reg-like domain SdrD_B PF17210.3 gi|48477858|ref|YP_023564.1| - 0.0063 16.7 25.0 0.26 11.5 0.2 6.8 5 2 2 7 7 7 3 SdrD B-like domain bMG3 PF11974.8 gi|48477858|ref|YP_023564.1| - 0.037 14.1 0.0 0.92 9.6 0.0 2.9 3 0 0 3 3 3 0 Bacterial alpha-2-macroglobulin MG3 domain NPCBM_assoc PF10633.9 gi|48477858|ref|YP_023564.1| - 0.11 12.8 0.1 0.5 10.6 0.1 2.3 1 0 0 1 1 1 0 NPCBM-associated, NEW3 domain of alpha-galactosidase Ig_mannosidase PF17753.1 gi|48477858|ref|YP_023564.1| - 0.54 10.0 2.6 0.99 9.2 0.2 2.7 2 0 0 2 2 2 0 Ig-fold domain DUF2012 PF09430.10 gi|48477858|ref|YP_023564.1| - 4.9 7.3 21.0 0.029 14.5 0.7 5.7 7 1 0 7 7 7 0 Protein of unknown function (DUF2012) CARDB PF07705.11 gi|48477859|ref|YP_023565.1| - 2.5e-05 24.5 5.0 2.5e-05 24.5 5.0 2.1 2 0 0 2 2 2 1 CARDB Big_1 PF02369.16 gi|48477859|ref|YP_023565.1| - 0.0079 16.2 2.1 0.019 15.0 1.8 1.8 1 1 0 1 1 1 1 Bacterial Ig-like domain (group 1) CBM53 PF16760.5 gi|48477859|ref|YP_023565.1| - 0.0082 16.7 0.9 0.027 15.0 0.4 2.1 3 0 0 3 3 3 1 Starch/carbohydrate-binding module (family 53) DUF5016 PF16408.5 gi|48477859|ref|YP_023565.1| - 0.012 15.7 0.2 0.019 14.9 0.2 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF5016) Laminin_G_3 PF13385.6 gi|48477859|ref|YP_023565.1| - 0.052 13.7 6.9 0.53 10.4 0.7 2.8 1 1 2 3 3 3 0 Concanavalin A-like lectin/glucanases superfamily CHZ PF09649.10 gi|48477859|ref|YP_023565.1| - 0.11 11.9 0.9 0.22 11.0 0.9 1.4 1 0 0 1 1 1 0 Histone chaperone domain CHZ DUF460 PF04312.13 gi|48477860|ref|YP_023566.1| - 0.031 14.0 0.1 0.074 12.8 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF460) Plk4_PB1 PF18190.1 gi|48477860|ref|YP_023566.1| - 0.057 13.6 0.0 0.09 13.0 0.0 1.3 1 0 0 1 1 1 0 Polo-like Kinase 4 Polo Box 1 MFS_1 PF07690.16 gi|48477861|ref|YP_023567.1| - 4.6e-19 68.6 36.3 4.6e-19 68.6 36.3 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily VIT1 PF01988.19 gi|48477862|ref|YP_023568.1| - 4.9e-23 82.1 13.9 1.4e-11 44.7 1.4 2.2 1 1 1 2 2 2 2 VIT family Rubrerythrin PF02915.17 gi|48477862|ref|YP_023568.1| - 2.8e-05 24.5 0.4 5.7e-05 23.5 0.4 1.4 1 0 0 1 1 1 1 Rubrerythrin EspB PF05802.11 gi|48477862|ref|YP_023568.1| - 0.17 11.9 0.1 0.47 10.4 0.0 1.8 2 0 0 2 2 2 0 Enterobacterial EspB protein DUF4337 PF14235.6 gi|48477862|ref|YP_023568.1| - 0.46 10.6 0.0 0.46 10.6 0.0 2.4 2 1 0 2 2 2 0 Domain of unknown function (DUF4337) IncE PF17627.2 gi|48477862|ref|YP_023568.1| - 4.7 7.2 11.4 0.2 11.7 4.9 1.9 2 0 0 2 2 2 0 Inclusion membrane protein E Aminotran_3 PF00202.21 gi|48477863|ref|YP_023569.1| - 5.9e-114 380.9 0.0 6.7e-114 380.7 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.21 gi|48477863|ref|YP_023569.1| - 0.049 12.8 0.0 0.072 12.2 0.0 1.3 1 0 0 1 1 1 0 Aminotransferase class I and II Beta_elim_lyase PF01212.21 gi|48477863|ref|YP_023569.1| - 0.063 12.5 0.0 0.14 11.4 0.0 1.6 1 1 0 1 1 1 0 Beta-eliminating lyase Hjc PF01870.18 gi|48477864|ref|YP_023570.1| - 6.7e-21 74.1 0.0 9.3e-21 73.6 0.0 1.2 1 0 0 1 1 1 1 Archaeal holliday junction resolvase (hjc) RE_ScaI PF09569.10 gi|48477864|ref|YP_023570.1| - 0.048 13.4 0.0 0.067 12.9 0.0 1.2 1 0 0 1 1 1 0 ScaI restriction endonuclease AHJR-like PF18743.1 gi|48477864|ref|YP_023570.1| - 0.12 12.0 0.0 0.18 11.4 0.0 1.3 1 0 0 1 1 1 0 REase_AHJR-like 4HBT PF03061.22 gi|48477865|ref|YP_023571.1| - 1.2e-15 57.6 0.0 1.9e-15 57.0 0.0 1.3 1 0 0 1 1 1 1 Thioesterase superfamily 4HBT_2 PF13279.6 gi|48477865|ref|YP_023571.1| - 0.045 14.2 0.0 0.054 14.0 0.0 1.2 1 0 0 1 1 1 0 Thioesterase-like superfamily Phage_SSB PF16773.5 gi|48477865|ref|YP_023571.1| - 0.072 13.2 0.1 0.14 12.3 0.1 1.7 1 1 0 1 1 1 0 Lactococcus phage single-stranded DNA binding protein HTH_5 PF01022.20 gi|48477867|ref|YP_023573.1| - 5.8e-05 22.9 0.1 0.00011 21.9 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR PF01047.22 gi|48477867|ref|YP_023573.1| - 0.00016 21.5 0.2 0.0004 20.3 0.2 1.6 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|48477867|ref|YP_023573.1| - 0.0011 18.5 0.6 0.0018 17.8 0.6 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|48477867|ref|YP_023573.1| - 0.0019 18.1 0.1 0.0034 17.2 0.1 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 gi|48477867|ref|YP_023573.1| - 0.0078 16.2 0.0 0.014 15.4 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain GUN4_N PF16416.5 gi|48477867|ref|YP_023573.1| - 0.01 15.8 0.0 0.022 14.7 0.0 1.6 1 0 0 1 1 1 1 ARM-like repeat domain, GUN4-N terminal TFIIE_alpha PF02002.17 gi|48477867|ref|YP_023573.1| - 0.01 15.7 1.1 0.026 14.4 1.1 1.7 1 0 0 1 1 1 0 TFIIE alpha subunit CheZ PF04344.13 gi|48477867|ref|YP_023573.1| - 0.051 13.5 0.4 0.084 12.8 0.3 1.4 1 1 0 1 1 1 0 Chemotaxis phosphatase, CheZ PadR PF03551.14 gi|48477867|ref|YP_023573.1| - 0.069 13.1 0.1 0.15 12.1 0.1 1.5 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family MFS_1 PF07690.16 gi|48477868|ref|YP_023574.1| - 2.9e-14 52.8 51.8 3.5e-13 49.2 41.9 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_3 PF05977.13 gi|48477868|ref|YP_023574.1| - 1.1e-05 24.1 23.3 1.4e-05 23.7 23.3 1.0 1 0 0 1 1 1 1 Transmembrane secretion effector MFS_1 PF07690.16 gi|48477869|ref|YP_023575.1| - 3.5e-25 88.7 44.9 1.5e-19 70.2 17.7 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|48477869|ref|YP_023575.1| - 5.9e-25 88.0 25.8 8e-25 87.6 25.8 1.1 1 0 0 1 1 1 1 Sugar (and other) transporter GST_C_6 PF17171.4 gi|48477869|ref|YP_023575.1| - 0.0079 16.0 0.2 0.066 13.0 0.0 2.6 3 0 0 3 3 3 1 Glutathione S-transferase, C-terminal domain MFS_3 PF05977.13 gi|48477869|ref|YP_023575.1| - 0.039 12.4 0.8 0.074 11.4 0.8 1.3 1 0 0 1 1 1 0 Transmembrane secretion effector NPCBM_assoc PF10633.9 gi|48477870|ref|YP_023576.1| - 0.0097 16.1 0.1 0.25 11.6 0.0 3.0 3 1 0 3 3 3 1 NPCBM-associated, NEW3 domain of alpha-galactosidase CARDB PF07705.11 gi|48477870|ref|YP_023576.1| - 0.011 15.9 9.9 0.95 9.8 0.4 3.8 3 0 0 3 3 3 0 CARDB ECSCR PF15820.5 gi|48477870|ref|YP_023576.1| - 0.03 14.1 0.7 0.03 14.1 0.7 2.2 2 0 0 2 2 2 0 Endothelial cell-specific chemotaxis regulator ASFV_J13L PF05568.11 gi|48477870|ref|YP_023576.1| - 0.042 13.6 0.3 0.086 12.6 0.3 1.5 1 0 0 1 1 1 0 African swine fever virus J13L protein TMEM154 PF15102.6 gi|48477870|ref|YP_023576.1| - 0.11 12.3 2.2 0.27 11.1 0.1 2.2 2 0 0 2 2 2 0 TMEM154 protein family PadR PF03551.14 gi|48477871|ref|YP_023577.1| - 4.9e-11 42.4 0.4 7.8e-11 41.8 0.4 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family DUF4364 PF14277.6 gi|48477871|ref|YP_023577.1| - 0.00012 21.9 0.3 0.00017 21.4 0.3 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4364) HTH_45 PF14947.6 gi|48477871|ref|YP_023577.1| - 0.00078 19.4 0.2 0.00078 19.4 0.2 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix HTH_27 PF13463.6 gi|48477871|ref|YP_023577.1| - 0.0031 18.0 0.0 0.01 16.3 0.0 1.9 2 0 0 2 2 2 1 Winged helix DNA-binding domain DUF1495 PF07381.11 gi|48477871|ref|YP_023577.1| - 0.0037 17.0 0.1 0.0071 16.1 0.1 1.7 1 1 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) DUF505 PF04458.12 gi|48477871|ref|YP_023577.1| - 0.0045 15.4 0.0 0.0061 15.0 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF505) RQC PF09382.10 gi|48477871|ref|YP_023577.1| - 0.0092 15.8 0.0 0.015 15.1 0.0 1.4 1 0 0 1 1 1 1 RQC domain HTH_34 PF13601.6 gi|48477871|ref|YP_023577.1| - 0.026 14.7 0.1 0.056 13.6 0.1 1.6 1 1 0 1 1 1 0 Winged helix DNA-binding domain AAA_assoc_C PF09821.9 gi|48477871|ref|YP_023577.1| - 0.044 14.3 0.1 5.1 7.7 0.0 2.2 1 1 1 2 2 2 0 C-terminal AAA-associated domain Mrr_N PF14338.6 gi|48477871|ref|YP_023577.1| - 0.075 13.2 0.0 0.21 11.7 0.0 1.8 2 0 0 2 2 2 0 Mrr N-terminal domain HTH_41 PF14502.6 gi|48477871|ref|YP_023577.1| - 0.14 11.9 0.0 0.42 10.3 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain NUDIX PF00293.28 gi|48477872|ref|YP_023578.1| - 4.2e-17 62.4 0.0 5.3e-17 62.1 0.0 1.1 1 0 0 1 1 1 1 NUDIX domain SOR PF07682.11 gi|48477873|ref|YP_023579.1| - 1e-143 477.7 1.4 1.2e-143 477.6 1.4 1.0 1 0 0 1 1 1 1 Sulphur oxygenase reductase ABM PF03992.16 gi|48477873|ref|YP_023579.1| - 1.6e-05 24.9 1.1 0.25 11.5 0.0 3.3 3 1 0 3 3 3 3 Antibiotic biosynthesis monooxygenase DNA_primase_S PF01896.19 gi|48477874|ref|YP_023580.1| - 7.4e-26 91.3 0.8 1.2e-25 90.6 0.8 1.3 1 0 0 1 1 1 1 DNA primase small subunit Proteasome PF00227.26 gi|48477876|ref|YP_023582.1| - 7.4e-59 198.4 0.5 9.1e-59 198.1 0.5 1.1 1 0 0 1 1 1 1 Proteasome subunit Proteasome_A_N PF10584.9 gi|48477876|ref|YP_023582.1| - 2.4e-14 52.7 0.1 3.8e-14 52.0 0.1 1.4 1 0 0 1 1 1 1 Proteasome subunit A N-terminal signature RQC PF09382.10 gi|48477877|ref|YP_023583.1| - 0.032 14.0 0.2 0.14 12.0 0.1 1.9 2 0 0 2 2 2 0 RQC domain Peptidase_M50 PF02163.22 gi|48477878|ref|YP_023584.1| - 3.8e-27 95.2 0.3 2.6e-26 92.4 0.3 2.0 1 1 0 1 1 1 1 Peptidase family M50 PDZ_2 PF13180.6 gi|48477878|ref|YP_023584.1| - 1.1e-06 28.9 0.0 2.4e-06 27.8 0.0 1.5 1 0 0 1 1 1 1 PDZ domain PDZ PF00595.24 gi|48477878|ref|YP_023584.1| - 0.0014 18.9 0.5 0.0066 16.8 0.0 2.2 3 0 0 3 3 3 1 PDZ domain PDZ_6 PF17820.1 gi|48477878|ref|YP_023584.1| - 0.0037 17.1 0.0 0.0067 16.3 0.0 1.4 1 0 0 1 1 1 1 PDZ domain Pox_A14 PF05767.12 gi|48477878|ref|YP_023584.1| - 0.11 12.7 4.3 0.12 12.5 0.1 3.1 3 0 0 3 3 3 0 Poxvirus virion envelope protein A14 FBPase_3 PF01950.16 gi|48477879|ref|YP_023585.1| - 1e-175 584.2 0.0 1.1e-175 584.1 0.0 1.0 1 0 0 1 1 1 1 Fructose-1,6-bisphosphatase Ribosomal_L40e PF01020.17 gi|298205344|ref|YP_003717796.1| - 1.1e-07 31.6 6.5 1.4e-07 31.3 6.5 1.1 1 0 0 1 1 1 1 Ribosomal L40e family DNA_RNApol_7kD PF03604.13 gi|298205344|ref|YP_003717796.1| - 0.01 15.5 5.5 0.016 14.8 5.5 1.5 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit DZR PF12773.7 gi|298205344|ref|YP_003717796.1| - 0.012 15.7 0.6 0.013 15.5 0.6 1.2 1 0 0 1 1 1 0 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|298205344|ref|YP_003717796.1| - 0.039 13.7 0.9 0.056 13.2 0.9 1.3 1 0 0 1 1 1 0 zinc-ribbon domain UPF0547 PF10571.9 gi|298205344|ref|YP_003717796.1| - 0.12 12.5 1.8 0.19 11.9 1.8 1.4 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 GATase_5 PF13507.6 gi|48477880|ref|YP_023586.1| - 7.7e-65 218.6 0.0 9.1e-65 218.3 0.0 1.0 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain GATase_3 PF07685.14 gi|48477880|ref|YP_023586.1| - 6.8e-05 22.5 0.0 0.00011 21.9 0.0 1.3 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain DJ-1_PfpI PF01965.24 gi|48477880|ref|YP_023586.1| - 0.0071 16.2 0.0 0.016 15.0 0.0 1.7 1 1 0 1 1 1 1 DJ-1/PfpI family GATase PF00117.28 gi|48477880|ref|YP_023586.1| - 0.11 12.2 0.0 0.25 11.1 0.0 1.7 1 1 0 1 1 1 0 Glutamine amidotransferase class-I PsbJ PF01788.17 gi|48477880|ref|YP_023586.1| - 0.18 11.7 0.1 0.39 10.6 0.1 1.5 1 0 0 1 1 1 0 PsbJ AAA_18 PF13238.6 gi|48477881|ref|YP_023587.1| - 2.5e-15 57.2 0.4 3.7e-15 56.6 0.4 1.2 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|48477881|ref|YP_023587.1| - 2.4e-09 37.8 0.1 4.1e-09 37.0 0.1 1.3 1 0 0 1 1 1 1 AAA domain P-mevalo_kinase PF04275.14 gi|48477881|ref|YP_023587.1| - 0.0052 16.7 0.1 0.012 15.5 0.1 1.7 1 0 0 1 1 1 1 Phosphomevalonate kinase AAA_33 PF13671.6 gi|48477881|ref|YP_023587.1| - 0.029 14.5 0.1 0.13 12.4 0.1 1.9 1 1 0 1 1 1 0 AAA domain cobW PF02492.19 gi|48477881|ref|YP_023587.1| - 0.11 12.1 0.1 11 5.6 0.0 2.3 2 1 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain CobD_Cbib PF03186.13 gi|48477883|ref|YP_023589.1| - 2.8e-70 236.7 0.0 3.6e-70 236.3 0.0 1.1 1 0 0 1 1 1 1 CobD/Cbib protein GATase_3 PF07685.14 gi|48477884|ref|YP_023590.1| - 3.8e-46 157.2 0.2 5.2e-46 156.7 0.2 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.23 gi|48477884|ref|YP_023590.1| - 3.1e-16 59.6 0.0 5.3e-16 58.8 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.6 gi|48477884|ref|YP_023590.1| - 7e-11 42.3 0.0 4.5e-10 39.7 0.0 2.0 1 1 0 1 1 1 1 AAA domain SNO PF01174.19 gi|48477884|ref|YP_023590.1| - 0.00087 19.2 0.0 0.0016 18.3 0.0 1.4 1 0 0 1 1 1 1 SNO glutamine amidotransferase family MobB PF03205.14 gi|48477884|ref|YP_023590.1| - 0.014 15.3 0.0 0.1 12.5 0.0 2.3 3 0 0 3 3 3 0 Molybdopterin guanine dinucleotide synthesis protein B VP9 PF09625.10 gi|48477884|ref|YP_023590.1| - 0.14 12.4 0.0 0.27 11.4 0.0 1.5 1 0 0 1 1 1 0 VP9 protein Aminotran_1_2 PF00155.21 gi|48477885|ref|YP_023591.1| - 1.8e-17 63.6 0.0 2.5e-17 63.1 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class I and II Peptidase_S41 PF03572.18 gi|48477886|ref|YP_023592.1| - 8.6e-24 84.0 0.0 2e-23 82.8 0.0 1.7 1 0 0 1 1 1 1 Peptidase family S41 Tricorn_C1 PF14684.6 gi|48477886|ref|YP_023592.1| - 5.9e-17 61.5 0.1 1.1e-16 60.6 0.1 1.5 1 0 0 1 1 1 1 Tricorn protease C1 domain Tricorn_PDZ PF14685.6 gi|48477886|ref|YP_023592.1| - 4.1e-14 52.3 0.1 1.4e-13 50.6 0.0 1.9 2 0 0 2 2 2 1 Tricorn protease PDZ domain PD40 PF07676.12 gi|48477886|ref|YP_023592.1| - 2.5e-09 36.8 13.0 0.0069 16.3 0.1 7.2 7 0 0 7 7 7 3 WD40-like Beta Propeller Repeat DPPIV_N PF00930.21 gi|48477886|ref|YP_023592.1| - 0.013 14.3 0.8 0.95 8.1 0.1 3.5 3 2 1 4 4 4 0 Dipeptidyl peptidase IV (DPP IV) N-terminal region PDZ_2 PF13180.6 gi|48477886|ref|YP_023592.1| - 0.13 12.6 0.1 0.73 10.2 0.1 2.2 2 0 0 2 2 2 0 PDZ domain MFS_1 PF07690.16 gi|48477887|ref|YP_023593.1| - 2.1e-54 184.8 51.3 2.1e-54 184.8 51.3 2.0 2 1 0 2 2 2 1 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|48477887|ref|YP_023593.1| - 1.5e-06 27.4 16.9 1.5e-06 27.4 16.9 3.4 2 2 1 3 3 3 2 Sugar (and other) transporter MFS_3 PF05977.13 gi|48477887|ref|YP_023593.1| - 4.9e-06 25.2 5.5 4.9e-06 25.2 5.5 2.6 2 1 0 2 2 2 2 Transmembrane secretion effector Lyase_1 PF00206.20 gi|48477888|ref|YP_023594.1| - 1.1e-53 182.7 0.1 1.6e-53 182.1 0.1 1.2 1 0 0 1 1 1 1 Lyase ADSL_C PF10397.9 gi|48477888|ref|YP_023594.1| - 1.7e-15 57.3 0.0 4.6e-15 55.9 0.0 1.8 1 0 0 1 1 1 1 Adenylosuccinate lyase C-terminus FumaraseC_C PF10415.9 gi|48477888|ref|YP_023594.1| - 0.08 13.4 0.0 0.21 12.1 0.0 1.8 1 0 0 1 1 1 0 Fumarase C C-terminus DUF4525 PF15027.6 gi|48477888|ref|YP_023594.1| - 0.087 12.6 0.4 0.28 10.9 0.1 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4525) Chlor_dismutase PF06778.12 gi|48477890|ref|YP_023596.1| - 4.4e-43 147.1 0.1 5.3e-43 146.9 0.1 1.0 1 0 0 1 1 1 1 Chlorite dismutase Rhodanese PF00581.20 gi|48477891|ref|YP_023597.1| - 4.2e-20 72.2 0.0 6.4e-20 71.7 0.0 1.3 1 0 0 1 1 1 1 Rhodanese-like domain YbbR PF07949.12 gi|48477891|ref|YP_023597.1| - 0.0069 16.7 0.0 0.0087 16.4 0.0 1.2 1 0 0 1 1 1 1 YbbR-like protein SBDS_C PF09377.10 gi|48477891|ref|YP_023597.1| - 0.097 12.7 0.0 0.1 12.6 0.0 1.2 1 0 0 1 1 1 0 SBDS protein C-terminal domain LacAB_rpiB PF02502.18 gi|48477891|ref|YP_023597.1| - 0.11 12.5 0.0 0.16 12.0 0.0 1.2 1 0 0 1 1 1 0 Ribose/Galactose Isomerase Ribosomal_S17e PF00833.18 gi|48477892|ref|YP_023598.1| - 2.5e-11 43.5 0.5 2.7e-11 43.5 0.5 1.0 1 0 0 1 1 1 1 Ribosomal S17 Xrn1_D3 PF18194.1 gi|48477892|ref|YP_023598.1| - 0.011 15.8 0.4 0.018 15.1 0.4 1.4 1 1 0 1 1 1 0 Exoribonuclease 1 Domain-3 DUF5507 PF17612.2 gi|48477892|ref|YP_023598.1| - 0.02 14.6 0.7 0.026 14.2 0.7 1.4 1 1 0 1 1 1 0 Family of unknown function (DUF5507) COMPASS-Shg1 PF05205.12 gi|48477892|ref|YP_023598.1| - 0.035 14.8 1.0 0.045 14.5 1.0 1.1 1 0 0 1 1 1 0 COMPASS (Complex proteins associated with Set1p) component shg1 Usp PF00582.26 gi|48477893|ref|YP_023599.1| - 9.9e-23 81.2 0.0 1.3e-22 80.8 0.0 1.2 1 0 0 1 1 1 1 Universal stress protein family SeqA_N PF17206.3 gi|48477894|ref|YP_023600.1| - 0.00042 19.6 0.3 0.0006 19.1 0.3 1.3 1 0 0 1 1 1 1 SeqA protein N-terminal domain COG4 PF08318.12 gi|48477894|ref|YP_023600.1| - 0.076 12.1 0.1 0.076 12.1 0.1 1.0 1 0 0 1 1 1 0 COG4 transport protein Hemerythrin PF01814.23 gi|48477895|ref|YP_023601.1| - 3.1e-13 50.5 0.5 5.9e-13 49.6 0.5 1.4 1 1 0 1 1 1 1 Hemerythrin HHE cation binding domain Proton_antipo_M PF00361.20 gi|48477896|ref|YP_023602.1| - 1.2e-19 70.7 35.9 1.2e-19 70.7 35.9 3.3 3 1 1 4 4 4 2 Proton-conducting membrane transporter Oxidored_q6 PF01058.22 gi|48477897|ref|YP_023603.1| - 1.4e-16 60.5 0.0 3.1e-15 56.2 0.0 2.4 2 1 0 2 2 2 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Fer4 PF00037.27 gi|48477897|ref|YP_023603.1| - 0.0025 17.6 6.5 0.14 12.0 0.3 3.6 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|48477897|ref|YP_023603.1| - 2.4 9.2 6.4 11 7.1 6.4 2.2 1 1 0 1 1 1 0 4Fe-4S double cluster binding domain Fer4_6 PF12837.7 gi|48477897|ref|YP_023603.1| - 9 6.6 8.1 2.3 8.4 0.8 3.0 3 0 0 3 3 3 0 4Fe-4S binding domain Complex1_49kDa PF00346.19 gi|48477898|ref|YP_023604.1| - 4.1e-18 65.5 0.2 2.5e-16 59.6 0.2 2.2 1 1 1 2 2 2 2 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Proton_antipo_M PF00361.20 gi|48477899|ref|YP_023605.1| - 6.3e-43 147.1 26.2 6.3e-43 147.1 26.2 2.6 1 1 1 2 2 2 1 Proton-conducting membrane transporter DUF2157 PF09925.9 gi|48477900|ref|YP_023606.1| - 2 8.2 10.6 0.46 10.3 6.5 2.1 2 1 0 2 2 2 0 Predicted membrane protein (DUF2157) NADHdh PF00146.21 gi|48477901|ref|YP_023607.1| - 2.1e-36 125.8 23.2 2.6e-36 125.5 23.2 1.0 1 0 0 1 1 1 1 NADH dehydrogenase Acyl-CoA_dh_1 PF00441.24 gi|48477902|ref|YP_023608.1| - 2e-40 138.5 0.2 2.6e-40 138.0 0.2 1.2 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.19 gi|48477902|ref|YP_023608.1| - 4.1e-19 68.6 0.1 7e-19 67.8 0.1 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_N PF02771.16 gi|48477902|ref|YP_023608.1| - 2.1e-17 63.8 0.0 4.6e-17 62.7 0.0 1.6 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.11 gi|48477902|ref|YP_023608.1| - 3.2e-11 43.6 0.0 4.7e-11 43.1 0.0 1.2 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain ECF_trnsprt PF12822.7 gi|48477904|ref|YP_023610.1| - 0.0004 20.5 11.1 0.0004 20.5 11.1 2.9 1 1 2 3 3 3 1 ECF transporter, substrate-specific component HisKA_7TM PF16927.5 gi|48477904|ref|YP_023610.1| - 0.072 13.1 32.3 0.094 12.7 32.3 1.2 1 0 0 1 1 1 0 N-terminal 7TM region of histidine kinase 7TMR-DISM_7TM PF07695.11 gi|48477904|ref|YP_023610.1| - 0.53 10.2 41.0 0.68 9.8 16.3 2.7 1 1 1 2 2 2 0 7TM diverse intracellular signalling Jagunal PF07086.12 gi|48477904|ref|YP_023610.1| - 5.9 6.9 14.9 0.17 12.0 0.9 2.7 2 1 0 2 2 2 0 Jagunal, ER re-organisation during oogenesis VKG_Carbox PF05090.14 gi|48477904|ref|YP_023610.1| - 6.1 5.6 16.9 10 4.8 16.9 1.3 1 0 0 1 1 1 0 Vitamin K-dependent gamma-carboxylase Acetyltransf_1 PF00583.25 gi|48477905|ref|YP_023611.1| - 8.8e-15 55.0 0.1 1.1e-14 54.7 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|48477905|ref|YP_023611.1| - 3.3e-14 52.9 0.0 4.3e-14 52.5 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|48477905|ref|YP_023611.1| - 1.4e-10 41.4 0.0 1.8e-10 41.1 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|48477905|ref|YP_023611.1| - 4.9e-05 23.2 0.0 7.4e-05 22.6 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_3 PF13302.7 gi|48477905|ref|YP_023611.1| - 0.00038 21.1 0.0 0.00052 20.7 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|48477905|ref|YP_023611.1| - 0.0011 19.1 0.3 1.1 9.4 0.0 2.1 2 0 0 2 2 2 2 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|48477905|ref|YP_023611.1| - 0.0025 18.0 1.3 0.0047 17.1 1.3 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain PanZ PF12568.8 gi|48477905|ref|YP_023611.1| - 0.0059 16.3 0.0 0.0078 15.9 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain, PanZ DUF4847 PF16139.5 gi|48477905|ref|YP_023611.1| - 0.0074 16.2 0.1 0.012 15.6 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4847) IlvC PF01450.19 gi|48477905|ref|YP_023611.1| - 0.087 13.1 0.0 0.14 12.4 0.0 1.4 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain Aldo_ket_red PF00248.21 gi|48477906|ref|YP_023612.1| - 2.7e-64 217.2 0.0 3e-64 217.0 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family Radical_SAM PF04055.21 gi|48477907|ref|YP_023613.1| - 4.5e-05 23.9 0.0 7.3e-05 23.2 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily PDH PF02153.17 gi|48477908|ref|YP_023614.1| - 6.2e-06 25.4 0.2 2.1e-05 23.7 0.2 1.9 1 1 0 1 1 1 1 Prephenate dehydrogenase CM_2 PF01817.21 gi|48477909|ref|YP_023615.1| - 4.5e-06 26.9 0.2 9.4e-06 25.9 0.2 1.6 1 0 0 1 1 1 1 Chorismate mutase type II Choline_sulf_C PF12411.8 gi|48477909|ref|YP_023615.1| - 0.14 11.9 0.1 0.42 10.5 0.1 1.7 1 0 0 1 1 1 0 Choline sulfatase enzyme C terminal AIRS PF00586.24 gi|48477910|ref|YP_023616.1| - 7.2e-16 58.6 0.0 1.2e-15 57.9 0.0 1.4 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain AIRS_C PF02769.22 gi|48477910|ref|YP_023616.1| - 0.0052 16.9 0.0 0.0082 16.3 0.0 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain GrpE PF01025.19 gi|48477911|ref|YP_023617.1| - 1.4e-29 102.9 6.9 3.8e-29 101.5 6.9 1.6 1 1 0 1 1 1 1 GrpE OmpH PF03938.14 gi|48477911|ref|YP_023617.1| - 0.011 16.1 2.3 0.016 15.5 2.3 1.4 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) Tox-HDC PF15656.6 gi|48477911|ref|YP_023617.1| - 0.042 14.0 1.0 0.082 13.1 1.0 1.4 1 0 0 1 1 1 0 Toxin with a H, D/N and C signature Casc1 PF12366.8 gi|48477911|ref|YP_023617.1| - 0.046 13.2 3.7 0.059 12.9 3.7 1.2 1 0 0 1 1 1 0 Cancer susceptibility candidate 1 PRANC PF09372.10 gi|48477911|ref|YP_023617.1| - 0.18 12.2 6.0 0.1 13.0 3.3 1.9 2 0 0 2 2 2 0 PRANC domain HSP70 PF00012.20 gi|48477912|ref|YP_023618.1| - 1.7e-225 749.8 8.7 4.9e-206 685.5 7.2 2.0 1 1 1 2 2 2 2 Hsp70 protein MreB_Mbl PF06723.13 gi|48477912|ref|YP_023618.1| - 2.2e-14 53.0 0.6 2.2e-14 53.0 0.6 3.1 2 1 0 2 2 2 1 MreB/Mbl protein GARP PF16731.5 gi|48477912|ref|YP_023618.1| - 0.0032 17.2 6.8 0.011 15.5 5.5 2.1 2 0 0 2 2 2 1 Glutamic acid/alanine-rich protein of Trypanosoma TRAF_BIRC3_bd PF16673.5 gi|48477912|ref|YP_023618.1| - 1.8 8.4 7.8 0.3 10.9 2.8 2.2 2 0 0 2 2 2 0 TNF receptor-associated factor BIRC3 binding domain DUF3347 PF11827.8 gi|48477912|ref|YP_023618.1| - 4.6 7.4 14.4 10 6.3 14.4 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3347) Fib_alpha PF08702.10 gi|48477912|ref|YP_023618.1| - 6.7 6.9 13.1 13 5.9 13.1 1.5 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family DnaJ_C PF01556.18 gi|48477913|ref|YP_023619.1| - 2.8e-36 124.8 0.1 3.6e-36 124.5 0.1 1.1 1 0 0 1 1 1 1 DnaJ C terminal domain DnaJ PF00226.31 gi|48477913|ref|YP_023619.1| - 4.1e-30 103.7 3.6 8.2e-30 102.7 3.6 1.5 1 0 0 1 1 1 1 DnaJ domain DnaJ_CXXCXGXG PF00684.19 gi|48477913|ref|YP_023619.1| - 2.3e-13 50.3 15.5 4e-13 49.5 15.5 1.4 1 0 0 1 1 1 1 DnaJ central domain Anti-TRAP PF15777.5 gi|48477913|ref|YP_023619.1| - 0.016 15.1 15.3 0.24 11.4 3.5 2.9 1 1 2 3 3 3 0 Tryptophan RNA-binding attenuator protein inhibitory protein Cytochrome_C7 PF14522.6 gi|48477913|ref|YP_023619.1| - 0.031 14.3 9.8 1.8 8.7 10.0 2.5 1 1 1 2 2 2 0 Cytochrome c7 and related cytochrome c GST_C PF00043.25 gi|48477913|ref|YP_023619.1| - 0.034 14.4 0.0 0.073 13.3 0.0 1.6 1 0 0 1 1 1 0 Glutathione S-transferase, C-terminal domain RRM_3 PF08777.11 gi|48477913|ref|YP_023619.1| - 0.045 13.8 0.1 0.12 12.4 0.1 1.7 1 0 0 1 1 1 0 RNA binding motif HypA PF01155.19 gi|48477913|ref|YP_023619.1| - 0.23 11.5 11.0 0.18 11.8 1.5 2.3 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DUF1356 PF07092.12 gi|48477913|ref|YP_023619.1| - 0.59 9.4 9.2 1.5 8.1 1.2 2.7 1 1 2 3 3 3 0 Protein of unknown function (DUF1356) Cytochrom_CIII PF02085.16 gi|48477913|ref|YP_023619.1| - 0.67 10.3 9.2 1.2 9.5 1.4 2.3 1 1 1 2 2 2 0 Class III cytochrome C family Cytochrom_c3_2 PF14537.6 gi|48477913|ref|YP_023619.1| - 0.92 10.0 10.8 2.1 8.8 2.0 2.6 1 1 1 2 2 2 0 Cytochrome c3 Cytochrome_CBB3 PF13442.6 gi|48477913|ref|YP_023619.1| - 4.8 7.6 17.3 2.4 8.5 0.1 4.2 2 1 3 5 5 4 0 Cytochrome C oxidase, cbb3-type, subunit III TackOD1 PF18551.1 gi|48477913|ref|YP_023619.1| - 5.6 6.6 7.8 3.5 7.3 1.2 2.3 1 1 0 1 1 1 0 Thaumarchaeal output domain 1 RNR_N PF08343.10 gi|48477914|ref|YP_023620.1| - 0.077 13.0 1.6 1.4 9.0 0.1 2.7 2 0 0 2 2 2 0 Ribonucleotide reductase N-terminal HTH_10 PF04967.12 gi|48477915|ref|YP_023621.1| - 1.3e-11 44.1 0.0 3.4e-11 42.8 0.0 1.7 2 0 0 2 2 2 1 HTH DNA binding domain AA_permease_2 PF13520.6 gi|48477916|ref|YP_023622.1| - 4.4e-41 141.1 54.8 4.4e-41 141.1 54.8 2.1 1 1 1 2 2 2 1 Amino acid permease AA_permease PF00324.21 gi|48477916|ref|YP_023622.1| - 3.9e-22 78.5 56.2 3.9e-22 78.5 56.2 2.4 1 1 1 2 2 2 1 Amino acid permease Ribul_P_3_epim PF00834.19 gi|48477917|ref|YP_023623.1| - 1.2e-63 214.1 0.0 1.4e-63 213.9 0.0 1.0 1 0 0 1 1 1 1 Ribulose-phosphate 3 epimerase family Trp_syntA PF00290.20 gi|48477917|ref|YP_023623.1| - 0.1 11.4 0.0 0.14 11.0 0.0 1.1 1 0 0 1 1 1 0 Tryptophan synthase alpha chain ADH_N PF08240.12 gi|48477918|ref|YP_023624.1| - 4.4e-16 58.7 0.0 7.6e-16 58.0 0.0 1.3 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|48477918|ref|YP_023624.1| - 6.3e-13 48.8 0.0 3.4e-11 43.2 0.0 2.2 1 1 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 gi|48477918|ref|YP_023624.1| - 1.8e-06 29.0 0.0 3.5e-06 28.1 0.0 1.5 1 1 0 1 1 1 1 Zinc-binding dehydrogenase PALP PF00291.25 gi|48477918|ref|YP_023624.1| - 0.00031 20.3 0.0 0.00048 19.6 0.0 1.2 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme 2-Hacid_dh_C PF02826.19 gi|48477918|ref|YP_023624.1| - 0.0091 15.4 0.0 0.015 14.6 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Pyr_redox_2 PF07992.14 gi|48477918|ref|YP_023624.1| - 0.011 15.0 0.0 0.021 14.1 0.0 1.4 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Glu_dehyd_C PF16912.5 gi|48477918|ref|YP_023624.1| - 0.013 15.0 0.0 0.43 10.0 0.0 2.2 1 1 0 1 1 1 0 Glucose dehydrogenase C-terminus TPR_1 PF00515.28 gi|48477919|ref|YP_023625.1| - 1.5e-43 144.8 18.5 5.9e-10 38.5 0.4 6.1 5 1 1 6 6 6 6 Tetratricopeptide repeat TPR_2 PF07719.17 gi|48477919|ref|YP_023625.1| - 3e-37 123.7 12.0 2.5e-07 30.3 0.1 6.1 5 1 1 6 6 6 6 Tetratricopeptide repeat TPR_8 PF13181.6 gi|48477919|ref|YP_023625.1| - 2.9e-31 105.0 17.4 1.3e-06 28.1 0.7 6.3 6 0 0 6 6 6 6 Tetratricopeptide repeat TPR_11 PF13414.6 gi|48477919|ref|YP_023625.1| - 7.3e-28 96.0 17.5 1.6e-07 30.9 0.4 6.6 4 1 3 7 7 7 6 TPR repeat TPR_12 PF13424.6 gi|48477919|ref|YP_023625.1| - 4.7e-18 65.3 4.7 9.5e-06 25.8 0.1 5.0 1 1 4 5 5 5 4 Tetratricopeptide repeat TPR_16 PF13432.6 gi|48477919|ref|YP_023625.1| - 2.4e-17 63.3 0.0 2.6e-06 28.0 0.0 4.1 3 1 1 4 4 4 3 Tetratricopeptide repeat TPR_19 PF14559.6 gi|48477919|ref|YP_023625.1| - 2.3e-15 56.8 0.3 1.2e-05 25.7 0.0 3.2 3 0 0 3 3 3 3 Tetratricopeptide repeat TPR_9 PF13371.6 gi|48477919|ref|YP_023625.1| - 2.6e-15 56.3 0.0 0.0005 20.2 0.0 4.9 2 1 3 5 5 5 4 Tetratricopeptide repeat TPR_17 PF13431.6 gi|48477919|ref|YP_023625.1| - 7.6e-15 54.1 9.7 0.0022 18.2 0.2 6.2 6 1 0 6 6 6 3 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|48477919|ref|YP_023625.1| - 5.9e-13 48.9 5.2 0.00032 20.9 0.5 3.2 2 1 1 3 3 3 3 Anaphase-promoting complex, cyclosome, subunit 3 TPR_6 PF13174.6 gi|48477919|ref|YP_023625.1| - 6.2e-13 48.5 9.4 0.07 13.8 0.0 6.2 6 0 0 6 6 6 4 Tetratricopeptide repeat TPR_14 PF13428.6 gi|48477919|ref|YP_023625.1| - 1.2e-12 47.5 0.1 0.35 11.8 0.0 6.0 3 3 3 6 6 6 3 Tetratricopeptide repeat TPR_7 PF13176.6 gi|48477919|ref|YP_023625.1| - 6.9e-12 44.5 8.3 0.1 12.7 0.0 6.4 6 1 1 7 7 7 3 Tetratricopeptide repeat TPR_10 PF13374.6 gi|48477919|ref|YP_023625.1| - 1.1e-10 41.0 9.1 0.082 12.8 0.2 6.1 6 0 0 6 6 6 2 Tetratricopeptide repeat SHNi-TPR PF10516.9 gi|48477919|ref|YP_023625.1| - 2.2e-08 33.4 1.1 0.92 9.0 0.1 5.3 6 0 0 6 6 6 2 SHNi-TPR NARP1 PF12569.8 gi|48477919|ref|YP_023625.1| - 6.3e-07 28.7 4.0 0.0011 18.0 0.1 3.0 1 1 2 3 3 3 2 NMDA receptor-regulated protein 1 TPR_15 PF13429.6 gi|48477919|ref|YP_023625.1| - 0.00025 20.4 0.1 0.87 8.7 0.0 2.9 1 1 2 3 3 3 2 Tetratricopeptide repeat MIT PF04212.18 gi|48477919|ref|YP_023625.1| - 0.00059 19.9 4.4 11 6.2 0.0 5.5 5 1 1 6 6 6 0 MIT (microtubule interacting and transport) domain SRP_TPR_like PF17004.5 gi|48477919|ref|YP_023625.1| - 0.0009 19.3 12.7 0.086 12.9 2.7 2.5 1 1 1 2 2 2 2 Putative TPR-like repeat ANAPC5 PF12862.7 gi|48477919|ref|YP_023625.1| - 0.0012 18.9 2.7 0.86 9.7 0.1 4.4 1 1 3 5 5 5 1 Anaphase-promoting complex subunit 5 TPR_21 PF09976.9 gi|48477919|ref|YP_023625.1| - 0.0027 17.5 0.2 3.8 7.2 0.0 3.2 1 1 2 3 3 3 1 Tetratricopeptide repeat-like domain DUF627 PF04781.12 gi|48477919|ref|YP_023625.1| - 0.022 14.8 0.6 2 8.5 0.0 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF627) DUF1024 PF06260.12 gi|48477919|ref|YP_023625.1| - 0.078 13.3 0.9 8 6.8 0.0 3.4 3 1 0 3 3 3 0 Protein of unknown function (DUF1024) TPR_MalT PF17874.1 gi|48477919|ref|YP_023625.1| - 0.26 10.6 0.0 4 6.7 0.0 2.6 1 1 2 3 3 3 0 MalT-like TPR region Fis1_TPR_C PF14853.6 gi|48477919|ref|YP_023625.1| - 0.45 10.6 8.1 2.5 8.3 1.0 4.3 4 2 2 6 6 5 0 Fis1 C-terminal tetratricopeptide repeat HTH_Bact PF18768.1 gi|48477919|ref|YP_023625.1| - 2.8 7.6 9.6 36 4.0 0.0 5.1 4 1 2 6 6 6 0 Helix-turn-helix bacterial domain polyprenyl_synt PF00348.17 gi|48477920|ref|YP_023626.1| - 3.1e-54 183.7 0.6 4e-54 183.4 0.6 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase Phage_integrase PF00589.22 gi|48477921|ref|YP_023627.1| - 6.1e-45 153.1 0.0 8.8e-45 152.6 0.0 1.2 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_4 PF13495.6 gi|48477921|ref|YP_023627.1| - 2.4e-13 50.3 1.1 7e-13 48.9 0.6 2.0 2 0 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.17 gi|48477921|ref|YP_023627.1| - 3.2e-06 27.4 1.0 3.5e-05 24.0 0.3 2.5 1 1 1 2 2 2 2 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_5 PF13102.6 gi|48477921|ref|YP_023627.1| - 0.0035 17.6 3.5 0.018 15.3 3.5 2.2 1 1 0 1 1 1 1 Phage integrase SAM-like domain Integrase_1 PF12835.7 gi|48477921|ref|YP_023627.1| - 0.044 13.9 0.1 0.12 12.5 0.0 1.8 2 0 0 2 2 2 0 Integrase Hydrolase_6 PF13344.6 gi|48477921|ref|YP_023627.1| - 0.13 12.4 0.1 4.2 7.5 0.0 2.5 2 0 0 2 2 2 0 Haloacid dehalogenase-like hydrolase Fe-ADH_2 PF13685.6 gi|48477922|ref|YP_023628.1| - 3.4e-62 210.4 1.0 4.2e-62 210.1 1.0 1.1 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.19 gi|48477922|ref|YP_023628.1| - 3.1e-23 82.2 0.3 2.3e-22 79.3 0.4 1.9 2 0 0 2 2 2 1 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.20 gi|48477922|ref|YP_023628.1| - 4.9e-07 29.2 0.2 0.013 14.6 0.1 2.6 2 1 0 2 2 2 2 3-dehydroquinate synthase UPF0179 PF03684.13 gi|48477923|ref|YP_023629.1| - 1.1e-45 155.0 3.4 1.2e-45 154.9 3.4 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0179) DDE_Tnp_1_6 PF13751.6 gi|48477923|ref|YP_023629.1| - 0.13 12.5 3.8 0.36 11.1 3.1 2.2 1 1 1 2 2 2 0 Transposase DDE domain MMR_HSR1 PF01926.23 gi|48477924|ref|YP_023630.1| - 1.3e-23 83.3 0.0 2.4e-23 82.4 0.0 1.4 1 0 0 1 1 1 1 50S ribosome-binding GTPase MMR_HSR1_C PF08438.10 gi|48477924|ref|YP_023630.1| - 6.5e-11 42.8 0.0 1.3e-10 41.8 0.0 1.5 1 0 0 1 1 1 1 GTPase of unknown function C-terminal TGS PF02824.21 gi|48477924|ref|YP_023630.1| - 4.7e-09 36.2 0.1 9.5e-09 35.2 0.1 1.5 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.18 gi|48477924|ref|YP_023630.1| - 5e-09 35.9 0.0 5.6e-07 29.2 0.0 2.3 1 1 0 1 1 1 1 Ferrous iron transport protein B Dynamin_N PF00350.23 gi|48477924|ref|YP_023630.1| - 3.5e-06 27.2 0.1 0.019 15.0 0.0 2.5 1 1 0 2 2 2 2 Dynamin family ABC_tran PF00005.27 gi|48477924|ref|YP_023630.1| - 0.014 15.9 0.1 0.088 13.3 0.0 2.1 2 0 0 2 2 2 0 ABC transporter YchF-GTPase_C PF06071.13 gi|48477924|ref|YP_023630.1| - 0.15 12.3 0.2 1.3 9.2 0.0 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF933) Ribosom_S12_S23 PF00164.25 gi|48477925|ref|YP_023631.1| - 3.4e-48 162.0 1.9 4.2e-48 161.7 1.9 1.1 1 0 0 1 1 1 1 Ribosomal protein S12/S23 Ribosomal_S7 PF00177.21 gi|48477926|ref|YP_023632.1| - 2.7e-39 134.2 1.1 3.3e-39 133.9 1.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S7p/S5e HTH_33 PF13592.6 gi|48477927|ref|YP_023633.1| - 4.2e-08 32.7 0.0 1e-07 31.4 0.0 1.7 2 0 0 2 2 2 1 Winged helix-turn helix HTH_32 PF13565.6 gi|48477927|ref|YP_023633.1| - 8.5e-06 26.3 0.1 1.1e-05 25.9 0.1 1.2 1 0 0 1 1 1 1 Homeodomain-like domain B5 PF03484.15 gi|48477927|ref|YP_023633.1| - 0.011 16.0 0.0 0.099 13.0 0.0 2.0 2 0 0 2 2 2 0 tRNA synthetase B5 domain U3_assoc_6 PF08640.11 gi|48477927|ref|YP_023633.1| - 0.044 13.8 2.7 0.59 10.2 1.9 2.7 2 1 0 2 2 2 0 U3 small nucleolar RNA-associated protein 6 Penicillinase_R PF03965.16 gi|48477927|ref|YP_023633.1| - 0.12 12.7 1.0 7.3 7.0 0.0 2.8 1 1 2 3 3 3 0 Penicillinase repressor SMC_N PF02463.19 gi|48477928|ref|YP_023634.1| - 8.9e-47 159.3 68.0 1.7e-27 96.3 29.3 4.2 2 2 0 2 2 2 2 RecF/RecN/SMC N terminal domain SMC_hinge PF06470.13 gi|48477928|ref|YP_023634.1| - 5.3e-27 94.5 0.0 3.5e-26 91.8 0.0 2.6 3 0 0 3 3 1 1 SMC proteins Flexible Hinge Domain AAA_23 PF13476.6 gi|48477928|ref|YP_023634.1| - 1.1e-16 62.0 29.9 1.1e-16 62.0 29.9 7.4 2 2 4 6 6 2 1 AAA domain AAA_15 PF13175.6 gi|48477928|ref|YP_023634.1| - 2.8e-12 47.1 40.7 2.8e-12 47.1 40.7 4.6 2 2 2 4 4 1 1 AAA ATPase domain AAA_21 PF13304.6 gi|48477928|ref|YP_023634.1| - 2.2e-08 34.3 24.1 1.6e-06 28.1 7.3 5.2 2 2 2 4 4 4 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|48477928|ref|YP_023634.1| - 3.7e-06 26.6 0.0 8.5e-06 25.4 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF1664 PF07889.12 gi|48477928|ref|YP_023634.1| - 2.4e-05 24.4 70.0 0.21 11.6 4.3 8.9 4 2 5 9 9 9 8 Protein of unknown function (DUF1664) Spc7 PF08317.11 gi|48477928|ref|YP_023634.1| - 0.00014 20.9 107.3 0.013 14.4 8.9 7.7 2 2 5 7 7 7 4 Spc7 kinetochore protein Filament PF00038.21 gi|48477928|ref|YP_023634.1| - 0.0068 16.0 7.2 0.0068 16.0 7.2 7.1 2 2 1 5 5 5 1 Intermediate filament protein AAA_27 PF13514.6 gi|48477928|ref|YP_023634.1| - 0.011 15.4 10.9 0.25 10.9 0.0 4.9 5 0 0 5 5 5 0 AAA domain HIP1_clath_bdg PF16515.5 gi|48477928|ref|YP_023634.1| - 0.05 14.2 0.3 0.05 14.2 0.3 8.9 3 2 4 9 9 8 0 Clathrin-binding domain of Huntingtin-interacting protein 1 AAA_13 PF13166.6 gi|48477928|ref|YP_023634.1| - 0.067 11.8 119.2 0.3 9.7 15.4 6.5 2 2 3 6 6 6 0 AAA domain TPR_MLP1_2 PF07926.12 gi|48477928|ref|YP_023634.1| - 0.4 10.7 81.5 0.4 10.7 4.6 7.8 4 1 1 6 6 6 0 TPR/MLP1/MLP2-like protein MCPsignal PF00015.21 gi|48477928|ref|YP_023634.1| - 0.69 9.7 45.7 0.071 12.9 3.9 7.1 4 2 3 7 7 7 0 Methyl-accepting chemotaxis protein (MCP) signalling domain DUF948 PF06103.11 gi|48477928|ref|YP_023634.1| - 1.8 8.9 34.5 4 7.8 1.6 8.1 6 3 3 9 9 9 0 Bacterial protein of unknown function (DUF948) ATG16 PF08614.11 gi|48477928|ref|YP_023634.1| - 3.6 7.8 75.9 0.14 12.3 5.5 7.7 3 3 4 7 7 7 0 Autophagy protein 16 (ATG16) Flt3_lig PF02947.14 gi|48477928|ref|YP_023634.1| - 5.5 7.2 9.8 2.5 8.3 0.0 4.0 4 0 0 4 4 4 0 flt3 ligand SlyX PF04102.12 gi|48477928|ref|YP_023634.1| - 8.5 7.1 17.8 0.94 10.1 0.2 6.7 6 3 1 7 7 7 0 SlyX Pox_VLTF3 PF04947.14 gi|48477929|ref|YP_023635.1| - 0.00014 21.7 2.7 0.00014 21.7 2.7 1.6 2 0 0 2 2 2 1 Poxvirus Late Transcription Factor VLTF3 like SHMT PF00464.19 gi|48477930|ref|YP_023636.1| - 9.7e-36 123.2 0.0 1.5e-35 122.6 0.0 1.2 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Beta_elim_lyase PF01212.21 gi|48477930|ref|YP_023636.1| - 0.00018 20.9 0.0 0.00028 20.3 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.17 gi|48477930|ref|YP_023636.1| - 0.045 13.1 0.0 0.064 12.6 0.0 1.2 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family GIDA PF01134.22 gi|48477930|ref|YP_023636.1| - 0.17 10.9 0.1 0.34 10.0 0.1 1.4 2 0 0 2 2 2 0 Glucose inhibited division protein A CBS PF00571.28 gi|48477931|ref|YP_023637.1| - 5.3e-39 132.5 13.4 5.5e-11 42.8 0.3 4.4 4 0 0 4 4 4 4 CBS domain LAGLIDADG_WhiA PF14527.6 gi|48477931|ref|YP_023637.1| - 0.0027 17.7 0.5 0.16 12.0 0.0 3.1 3 0 0 3 3 3 1 WhiA LAGLIDADG-like domain PmbA_TldD PF01523.16 gi|48477932|ref|YP_023638.1| - 1.1e-42 146.8 0.3 1.7e-42 146.2 0.3 1.3 1 0 0 1 1 1 1 Putative modulator of DNA gyrase PmbA_TldD PF01523.16 gi|48477933|ref|YP_023639.1| - 2.5e-34 119.4 0.1 3.4e-34 119.0 0.1 1.2 1 0 0 1 1 1 1 Putative modulator of DNA gyrase Peptidase_M1 PF01433.20 gi|48477934|ref|YP_023640.1| - 1.4e-80 270.0 0.9 2.4e-80 269.2 0.9 1.4 1 0 0 1 1 1 1 Peptidase family M1 domain Peptidase_M1_N PF17900.1 gi|48477934|ref|YP_023640.1| - 1.3e-36 126.6 1.0 2.5e-36 125.6 0.3 1.8 2 0 0 2 2 2 1 Peptidase M1 N-terminal domain ERAP1_C PF11838.8 gi|48477934|ref|YP_023640.1| - 9.5e-23 81.2 0.0 1.6e-22 80.5 0.0 1.3 1 0 0 1 1 1 1 ERAP1-like C-terminal domain Cyt_bd_oxida_I PF01654.17 gi|48477936|ref|YP_023642.1| - 3.7e-91 305.8 27.6 4.5e-91 305.6 27.6 1.0 1 0 0 1 1 1 1 Cytochrome bd terminal oxidase subunit I DUF2407_C PF13373.6 gi|48477936|ref|YP_023642.1| - 0.31 11.2 1.9 0.56 10.4 0.4 2.0 2 0 0 2 2 2 0 DUF2407 C-terminal domain CopD PF05425.13 gi|48477937|ref|YP_023643.1| - 0.082 13.3 0.3 0.082 13.3 0.3 2.1 2 0 0 2 2 2 0 Copper resistance protein D DUF4231 PF14015.6 gi|48477937|ref|YP_023643.1| - 0.21 12.1 0.2 0.21 12.1 0.2 3.4 3 2 0 3 3 3 0 Protein of unknown function (DUF4231) SHS2_Rpb7-N PF03876.17 gi|48477938|ref|YP_023644.1| - 1.6e-15 57.2 0.5 2.7e-15 56.5 0.1 1.6 2 0 0 2 2 2 1 SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 S1 PF00575.23 gi|48477938|ref|YP_023644.1| - 4.1e-14 52.7 0.3 8.7e-14 51.6 0.3 1.6 1 0 0 1 1 1 1 S1 RNA binding domain CsrA PF02599.16 gi|48477938|ref|YP_023644.1| - 0.074 13.0 0.1 0.17 11.8 0.1 1.7 1 0 0 1 1 1 0 Global regulator protein family S1_2 PF13509.6 gi|48477938|ref|YP_023644.1| - 0.093 12.8 0.0 21 5.3 0.0 2.5 1 1 1 2 2 2 0 S1 domain RNA_pol_Rbc25 PF08292.12 gi|48477938|ref|YP_023644.1| - 0.098 12.9 0.0 0.14 12.4 0.0 1.3 1 0 0 1 1 1 0 RNA polymerase III subunit Rpc25 Spt4 PF06093.13 gi|48477939|ref|YP_023645.1| - 5.9e-13 48.7 0.0 8e-13 48.3 0.0 1.2 1 0 0 1 1 1 1 Spt4/RpoE2 zinc finger DUF359 PF04019.12 gi|48477940|ref|YP_023646.1| - 3.4e-34 117.2 0.4 4.4e-34 116.8 0.4 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF359) Ribosomal_S24e PF01282.19 gi|48477941|ref|YP_023647.1| - 1.4e-22 79.4 0.9 1.6e-22 79.2 0.9 1.1 1 0 0 1 1 1 1 Ribosomal protein S24e Ribosomal_S27 PF01599.19 gi|48477942|ref|YP_023648.1| - 1.5e-19 69.8 1.6 1.7e-19 69.7 1.6 1.1 1 0 0 1 1 1 1 Ribosomal protein S27a IBR PF01485.21 gi|48477942|ref|YP_023648.1| - 0.015 15.5 0.1 0.017 15.3 0.1 1.1 1 0 0 1 1 1 0 IBR domain, a half RING-finger domain Ribosomal_L37e PF01907.19 gi|48477942|ref|YP_023648.1| - 0.02 15.0 2.7 0.026 14.7 2.7 1.3 1 0 0 1 1 1 0 Ribosomal protein L37e Nudix_N_2 PF14803.6 gi|48477942|ref|YP_023648.1| - 0.023 14.6 6.9 0.14 12.1 6.7 2.0 1 1 0 1 1 1 0 Nudix N-terminal GFA PF04828.14 gi|48477942|ref|YP_023648.1| - 0.031 14.6 1.4 0.13 12.6 0.0 1.9 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme zinc_ribbon_2 PF13240.6 gi|48477942|ref|YP_023648.1| - 0.033 13.9 6.1 0.36 10.6 1.0 2.4 2 1 0 2 2 2 0 zinc-ribbon domain MqsA_antitoxin PF15731.5 gi|48477942|ref|YP_023648.1| - 0.043 13.9 0.1 0.053 13.6 0.1 1.3 1 1 0 1 1 1 0 Antitoxin component of bacterial toxin-antitoxin system, MqsA DZR PF12773.7 gi|48477942|ref|YP_023648.1| - 0.049 13.7 2.5 0.13 12.3 2.5 1.6 1 1 0 1 1 1 0 Double zinc ribbon DUF1451 PF07295.11 gi|48477942|ref|YP_023648.1| - 0.051 13.6 1.3 0.05 13.6 1.3 1.1 1 0 0 1 1 1 0 Zinc-ribbon containing domain Zn_Tnp_IS1595 PF12760.7 gi|48477942|ref|YP_023648.1| - 0.061 13.3 5.1 0.14 12.1 4.9 1.7 1 1 0 1 1 1 0 Transposase zinc-ribbon domain zf-NADH-PPase PF09297.11 gi|48477942|ref|YP_023648.1| - 0.063 13.0 10.9 0.68 9.6 10.9 2.1 1 1 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain HypA PF01155.19 gi|48477942|ref|YP_023648.1| - 0.13 12.3 0.3 0.13 12.3 0.3 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_13 PF09855.9 gi|48477942|ref|YP_023648.1| - 0.18 12.0 3.3 0.25 11.6 0.5 2.1 1 1 1 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) RNA_POL_M_15KD PF02150.16 gi|48477942|ref|YP_023648.1| - 0.51 10.3 6.2 3.2 7.7 6.2 2.0 1 1 0 1 1 1 0 RNA polymerases M/15 Kd subunit NOB1_Zn_bind PF08772.11 gi|48477942|ref|YP_023648.1| - 0.58 10.4 5.9 0.57 10.4 0.6 2.1 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like PknG_rubred PF16919.5 gi|48477942|ref|YP_023648.1| - 1.2 9.3 3.9 1.8 8.7 3.9 1.4 1 1 0 1 1 1 0 Protein kinase G rubredoxin domain DUF2175 PF09943.9 gi|48477943|ref|YP_023649.1| - 7.4e-31 106.4 2.5 8e-31 106.2 2.5 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2175) zf-C2H2_6 PF13912.6 gi|48477943|ref|YP_023649.1| - 0.14 12.2 0.7 0.22 11.6 0.7 1.3 1 0 0 1 1 1 0 C2H2-type zinc finger PSI_PsaE PF02427.17 gi|48477944|ref|YP_023650.1| - 0.016 14.9 0.3 0.025 14.2 0.3 1.4 1 0 0 1 1 1 0 Photosystem I reaction centre subunit IV / PsaE RNase_P_Rpp14 PF01900.19 gi|48477944|ref|YP_023650.1| - 0.061 13.6 0.3 0.22 11.8 0.2 2.0 1 1 1 2 2 2 0 Rpp14/Pop5 family Cloacin PF03515.14 gi|48477944|ref|YP_023650.1| - 0.12 12.1 0.0 0.12 12.0 0.0 1.1 1 0 0 1 1 1 0 Colicin-like bacteriocin tRNase domain AAA PF00004.29 gi|48477945|ref|YP_023651.1| - 3.2e-15 56.7 0.0 1.3e-14 54.8 0.0 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|48477945|ref|YP_023651.1| - 2e-06 28.1 0.1 0.00097 19.4 0.1 2.7 1 1 0 1 1 1 1 AAA domain Rad17 PF03215.15 gi|48477945|ref|YP_023651.1| - 0.00011 22.1 0.0 0.00044 20.2 0.0 1.9 1 1 1 2 2 2 1 Rad17 P-loop domain RuvB_N PF05496.12 gi|48477945|ref|YP_023651.1| - 0.00034 20.4 0.0 0.00059 19.6 0.0 1.4 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_5 PF07728.14 gi|48477945|ref|YP_023651.1| - 0.0004 20.4 0.0 0.00083 19.4 0.0 1.6 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) DUF2075 PF09848.9 gi|48477945|ref|YP_023651.1| - 0.0022 17.3 0.1 0.19 10.9 0.0 2.9 2 1 1 3 3 3 1 Uncharacterized conserved protein (DUF2075) AAA_30 PF13604.6 gi|48477945|ref|YP_023651.1| - 0.0025 17.5 0.0 0.0042 16.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_24 PF13479.6 gi|48477945|ref|YP_023651.1| - 0.003 17.3 0.0 0.0083 15.9 0.0 1.8 1 0 0 1 1 1 1 AAA domain AAA_14 PF13173.6 gi|48477945|ref|YP_023651.1| - 0.003 17.6 0.6 0.0073 16.3 0.0 2.0 2 1 1 3 3 2 1 AAA domain AAA_16 PF13191.6 gi|48477945|ref|YP_023651.1| - 0.0034 17.8 0.0 0.014 15.8 0.0 2.0 1 1 0 1 1 1 1 AAA ATPase domain TIP49 PF06068.13 gi|48477945|ref|YP_023651.1| - 0.0037 16.5 0.0 0.0067 15.7 0.0 1.3 1 0 0 1 1 1 1 TIP49 P-loop domain AAA_18 PF13238.6 gi|48477945|ref|YP_023651.1| - 0.014 15.9 0.1 0.076 13.6 0.0 2.4 1 1 1 2 2 2 0 AAA domain AAA_11 PF13086.6 gi|48477945|ref|YP_023651.1| - 0.015 15.1 0.0 0.047 13.5 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.6 gi|48477945|ref|YP_023651.1| - 0.02 15.3 0.4 0.09 13.1 0.1 2.1 2 1 1 3 3 3 0 AAA domain NACHT PF05729.12 gi|48477945|ref|YP_023651.1| - 0.03 14.2 0.0 1.3 9.0 0.0 2.5 1 1 0 1 1 1 0 NACHT domain AAA_6 PF12774.7 gi|48477945|ref|YP_023651.1| - 0.046 12.7 0.0 0.16 10.9 0.0 1.8 2 0 0 2 2 2 0 Hydrolytic ATP binding site of dynein motor region RNA_helicase PF00910.22 gi|48477945|ref|YP_023651.1| - 0.063 13.7 0.0 0.27 11.7 0.0 2.1 2 0 0 2 2 1 0 RNA helicase AAA_25 PF13481.6 gi|48477945|ref|YP_023651.1| - 0.069 12.7 0.0 0.19 11.3 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_2 PF07724.14 gi|48477945|ref|YP_023651.1| - 0.084 13.0 0.0 0.15 12.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain (Cdc48 subfamily) TEX12 PF15219.6 gi|48477945|ref|YP_023651.1| - 0.087 13.1 0.1 0.26 11.6 0.1 1.8 1 0 0 1 1 1 0 Testis-expressed 12 TsaE PF02367.17 gi|48477945|ref|YP_023651.1| - 0.12 12.4 0.0 0.29 11.1 0.0 1.6 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE Mg_chelatase PF01078.21 gi|48477945|ref|YP_023651.1| - 0.15 11.5 0.0 0.24 10.7 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI tRNA_bind PF01588.20 gi|48477946|ref|YP_023652.1| - 8.2e-28 96.4 0.0 9.3e-28 96.2 0.0 1.0 1 0 0 1 1 1 1 Putative tRNA binding domain Ribosomal_L15e PF00827.17 gi|48477947|ref|YP_023653.1| - 8e-76 254.0 4.7 9e-76 253.9 4.7 1.0 1 0 0 1 1 1 1 Ribosomal L15 tRNA-synt_1c PF00749.21 gi|48477950|ref|YP_023656.1| - 1.3e-61 208.2 0.1 2.4e-61 207.4 0.1 1.5 2 0 0 2 2 2 1 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1c_C PF03950.18 gi|48477950|ref|YP_023656.1| - 1.2e-17 64.3 0.0 4.1e-17 62.6 0.0 2.0 2 0 0 2 2 2 1 tRNA synthetases class I (E and Q), anti-codon binding domain NOG1_N PF17835.1 gi|48477951|ref|YP_023657.1| - 5.3e-40 137.0 0.3 8.7e-40 136.3 0.3 1.3 1 0 0 1 1 1 1 NOG1 N-terminal helical domain MMR_HSR1 PF01926.23 gi|48477951|ref|YP_023657.1| - 9.2e-17 61.2 0.0 1.6e-16 60.4 0.0 1.4 1 0 0 1 1 1 1 50S ribosome-binding GTPase NOG1 PF06858.14 gi|48477951|ref|YP_023657.1| - 1.6e-14 53.4 0.1 3.1e-14 52.5 0.1 1.5 1 0 0 1 1 1 1 Nucleolar GTP-binding protein 1 (NOG1) FeoB_N PF02421.18 gi|48477951|ref|YP_023657.1| - 1.1e-08 34.7 0.0 2.1e-08 33.9 0.0 1.4 1 0 0 1 1 1 1 Ferrous iron transport protein B Dynamin_N PF00350.23 gi|48477951|ref|YP_023657.1| - 0.0038 17.3 0.4 0.32 11.0 0.0 2.6 2 1 1 3 3 3 1 Dynamin family SRPRB PF09439.10 gi|48477951|ref|YP_023657.1| - 0.056 12.9 0.1 0.13 11.7 0.0 1.8 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit RsgA_GTPase PF03193.16 gi|48477951|ref|YP_023657.1| - 0.16 11.8 0.0 0.97 9.3 0.0 2.2 3 0 0 3 3 3 0 RsgA GTPase DEAD_assoc PF08494.11 gi|48477952|ref|YP_023658.1| - 7.2e-51 172.7 0.0 1.4e-50 171.8 0.0 1.5 1 0 0 1 1 1 1 DEAD/H associated DEAD PF00270.29 gi|48477952|ref|YP_023658.1| - 2.8e-24 85.9 0.0 1.7e-23 83.3 0.0 2.2 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|48477952|ref|YP_023658.1| - 1.7e-16 60.6 0.2 1.7e-15 57.3 0.2 2.8 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|48477952|ref|YP_023658.1| - 9.5e-10 38.7 0.0 3.3e-09 37.0 0.0 1.9 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_19 PF13245.6 gi|48477952|ref|YP_023658.1| - 0.027 14.8 0.0 0.14 12.5 0.0 2.3 1 0 0 1 1 1 0 AAA domain DNA_pol_alpha_N PF12254.8 gi|48477952|ref|YP_023658.1| - 0.079 13.0 0.4 0.46 10.6 0.4 2.3 2 0 0 2 2 2 0 DNA polymerase alpha subunit p180 N terminal Aldo_ket_red PF00248.21 gi|48477953|ref|YP_023659.1| - 1.2e-63 215.1 1.6 1.5e-54 185.2 0.3 2.0 1 1 1 2 2 2 2 Aldo/keto reductase family DUF4844 PF16133.5 gi|48477953|ref|YP_023659.1| - 0.098 13.2 1.8 9.8 6.8 0.3 2.4 2 1 0 2 2 2 0 Domain of unknown function (DUF4844) DUF1447 PF07288.11 gi|48477953|ref|YP_023659.1| - 1 9.5 3.7 1.3 9.1 0.2 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1447) DUF4105 PF13387.6 gi|48477954|ref|YP_023660.1| - 0.12 12.0 0.2 0.55 9.9 0.1 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4105) Helicase_C_2 PF13307.6 gi|48477956|ref|YP_023662.1| - 1.8e-20 73.8 0.1 4.9e-20 72.4 0.1 1.7 1 1 1 2 2 2 1 Helicase C-terminal domain DEAD_2 PF06733.15 gi|48477956|ref|YP_023662.1| - 1.2e-17 64.1 0.1 1.9e-17 63.5 0.1 1.3 1 0 0 1 1 1 1 DEAD_2 ResIII PF04851.15 gi|48477956|ref|YP_023662.1| - 7.1e-05 22.9 0.0 0.21 11.6 0.0 2.9 3 0 0 3 3 3 2 Type III restriction enzyme, res subunit DEAD PF00270.29 gi|48477956|ref|YP_023662.1| - 0.0012 18.7 0.0 0.14 11.9 0.0 2.5 3 0 0 3 3 3 2 DEAD/DEAH box helicase Sec61_beta PF03911.16 gi|48477957|ref|YP_023663.1| - 1.9e-12 47.0 0.1 2.1e-12 46.8 0.1 1.0 1 0 0 1 1 1 1 Sec61beta family Adeno_E3A PF05248.12 gi|48477957|ref|YP_023663.1| - 0.16 12.0 0.0 0.19 11.8 0.0 1.0 1 0 0 1 1 1 0 Adenovirus E3A PQQ PF01011.21 gi|48477958|ref|YP_023664.1| - 5.4e-14 51.3 9.3 0.0097 15.8 0.3 6.0 5 1 0 5 5 5 5 PQQ enzyme repeat PQQ_2 PF13360.6 gi|48477958|ref|YP_023664.1| - 4e-12 46.2 0.0 5.3e-06 26.2 0.0 2.9 2 1 0 2 2 2 2 PQQ-like domain PQQ_3 PF13570.6 gi|48477958|ref|YP_023664.1| - 0.0052 17.2 12.0 0.047 14.2 0.2 5.8 7 1 0 7 7 7 1 PQQ-like domain Pyr_redox_2 PF07992.14 gi|48477959|ref|YP_023665.1| - 6.5e-54 183.1 0.7 7.7e-54 182.9 0.2 1.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|48477959|ref|YP_023665.1| - 2.7e-16 59.8 0.0 8.6e-16 58.2 0.0 1.9 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox_3 PF13738.6 gi|48477959|ref|YP_023665.1| - 5.3e-13 48.9 1.0 6.9e-11 41.9 0.1 2.5 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|48477959|ref|YP_023665.1| - 5.9e-13 49.2 8.4 2e-12 47.5 0.0 3.8 5 0 0 5 5 5 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|48477959|ref|YP_023665.1| - 7.2e-10 38.5 3.1 1.2e-05 24.6 0.5 3.4 3 1 0 3 3 3 2 Glucose inhibited division protein A FAD_binding_2 PF00890.24 gi|48477959|ref|YP_023665.1| - 5.8e-07 28.9 1.4 0.00039 19.6 0.1 3.1 3 0 0 3 3 3 2 FAD binding domain NAD_binding_8 PF13450.6 gi|48477959|ref|YP_023665.1| - 7.5e-06 26.1 2.2 0.032 14.5 0.0 3.1 4 0 0 4 4 3 2 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.19 gi|48477959|ref|YP_023665.1| - 1.7e-05 24.2 0.2 0.071 12.4 0.1 2.6 3 0 0 3 3 3 2 FAD binding domain K_oxygenase PF13434.6 gi|48477959|ref|YP_023665.1| - 0.00028 20.1 0.0 0.0046 16.2 0.0 2.5 2 1 0 3 3 3 1 L-lysine 6-monooxygenase (NADPH-requiring) UDPG_MGDP_dh_N PF03721.14 gi|48477959|ref|YP_023665.1| - 0.00065 19.3 3.5 0.0047 16.5 0.4 2.8 2 1 0 3 3 3 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AlaDh_PNT_C PF01262.21 gi|48477959|ref|YP_023665.1| - 0.0011 18.3 0.0 0.12 11.7 0.0 2.6 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain HI0933_like PF03486.14 gi|48477959|ref|YP_023665.1| - 0.0014 17.4 3.1 0.44 9.2 0.1 3.8 3 1 1 4 4 4 1 HI0933-like protein DAO PF01266.24 gi|48477959|ref|YP_023665.1| - 0.0058 16.3 2.4 0.79 9.2 1.0 3.3 4 0 0 4 4 4 1 FAD dependent oxidoreductase Thi4 PF01946.17 gi|48477959|ref|YP_023665.1| - 0.0065 15.7 0.5 0.075 12.3 0.0 2.7 3 0 0 3 3 3 1 Thi4 family 3HCDH_N PF02737.18 gi|48477959|ref|YP_023665.1| - 0.011 15.6 0.1 0.2 11.5 0.0 2.3 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FAD_oxidored PF12831.7 gi|48477959|ref|YP_023665.1| - 0.016 14.6 0.0 0.026 13.9 0.0 1.4 1 0 0 1 1 1 0 FAD dependent oxidoreductase Amino_oxidase PF01593.24 gi|48477959|ref|YP_023665.1| - 0.12 11.7 0.0 0.53 9.5 0.0 1.9 2 0 0 2 2 2 0 Flavin containing amine oxidoreductase NAD_binding_7 PF13241.6 gi|48477959|ref|YP_023665.1| - 0.14 12.6 0.1 29 5.2 0.0 2.4 2 0 0 2 2 2 0 Putative NAD(P)-binding CBS PF00571.28 gi|48477960|ref|YP_023666.1| - 6.4e-23 81.0 0.5 9.1e-11 42.0 0.0 2.2 2 0 0 2 2 2 2 CBS domain Citrate_synt PF00285.21 gi|48477961|ref|YP_023667.1| - 4e-112 374.9 0.0 4.6e-112 374.7 0.0 1.0 1 0 0 1 1 1 1 Citrate synthase, C-terminal domain CO_deh_flav_C PF03450.17 gi|48477961|ref|YP_023667.1| - 0.0049 17.0 0.2 0.71 10.1 0.1 2.3 2 0 0 2 2 2 2 CO dehydrogenase flavoprotein C-terminal domain DUF3874 PF12990.7 gi|48477961|ref|YP_023667.1| - 0.032 14.6 0.2 7.4 7.0 0.1 2.4 2 0 0 2 2 2 0 Domain of unknonw function from B. Theta Gene description (DUF3874) T4SS PF07996.11 gi|48477961|ref|YP_023667.1| - 0.13 12.6 0.0 0.22 11.9 0.0 1.3 1 0 0 1 1 1 0 Type IV secretion system proteins RrnaAD PF00398.20 gi|48477962|ref|YP_023668.1| - 5.6e-09 35.5 0.0 9.4e-09 34.7 0.0 1.2 1 1 0 1 1 1 1 Ribosomal RNA adenine dimethylase Met_10 PF02475.16 gi|48477962|ref|YP_023668.1| - 7.6e-07 29.1 0.2 9.2e-07 28.8 0.2 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_25 PF13649.6 gi|48477962|ref|YP_023668.1| - 1.1e-05 26.1 0.0 1.5e-05 25.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|48477962|ref|YP_023668.1| - 2.8e-05 23.7 0.0 3.8e-05 23.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain PCMT PF01135.19 gi|48477962|ref|YP_023668.1| - 0.00046 20.0 0.0 0.00077 19.3 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_32 PF13679.6 gi|48477962|ref|YP_023668.1| - 0.0021 18.1 0.0 0.0026 17.8 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain DOT1 PF08123.13 gi|48477962|ref|YP_023668.1| - 0.0025 17.4 0.2 0.01 15.4 0.2 1.9 1 1 0 1 1 1 1 Histone methylation protein DOT1 PrmA PF06325.13 gi|48477962|ref|YP_023668.1| - 0.0029 17.1 0.0 0.0034 16.8 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_31 PF13847.6 gi|48477962|ref|YP_023668.1| - 0.0038 17.0 0.2 0.0054 16.5 0.2 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_2 PF00891.18 gi|48477962|ref|YP_023668.1| - 0.0039 16.5 0.1 0.0074 15.6 0.1 1.4 1 1 0 1 1 1 1 O-methyltransferase domain Methyltransf_23 PF13489.6 gi|48477962|ref|YP_023668.1| - 0.007 16.2 0.0 0.0089 15.9 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain DREV PF05219.12 gi|48477962|ref|YP_023668.1| - 0.0091 15.1 0.0 0.25 10.4 0.0 2.0 1 1 1 2 2 2 1 DREV methyltransferase Methyltransf_12 PF08242.12 gi|48477962|ref|YP_023668.1| - 0.015 16.1 0.1 0.026 15.3 0.1 1.4 1 0 0 1 1 1 0 Methyltransferase domain MetW PF07021.12 gi|48477962|ref|YP_023668.1| - 0.024 14.2 0.0 0.032 13.8 0.0 1.2 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW PRMT5 PF05185.16 gi|48477962|ref|YP_023668.1| - 0.037 13.9 0.0 0.048 13.5 0.0 1.2 1 0 0 1 1 1 0 PRMT5 arginine-N-methyltransferase Methyltransf_5 PF01795.19 gi|48477962|ref|YP_023668.1| - 0.054 13.0 0.0 0.084 12.4 0.0 1.3 1 0 0 1 1 1 0 MraW methylase family AsnC_trans_reg PF01037.21 gi|48477963|ref|YP_023669.1| - 8.4e-15 54.5 0.0 1.2e-14 54.0 0.0 1.3 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_24 PF13412.6 gi|48477963|ref|YP_023669.1| - 1.2e-08 34.4 0.4 4.3e-08 32.6 0.0 2.1 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|48477963|ref|YP_023669.1| - 1.2e-05 25.1 0.2 0.0001 22.1 0.0 2.3 2 1 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 gi|48477963|ref|YP_023669.1| - 1.2e-05 25.1 0.0 3.3e-05 23.6 0.0 1.8 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_AsnC-type PF13404.6 gi|48477963|ref|YP_023669.1| - 2.3e-05 24.1 0.1 4.6e-05 23.2 0.1 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_IclR PF09339.10 gi|48477963|ref|YP_023669.1| - 7.7e-05 22.4 0.0 0.00012 21.7 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR PF01047.22 gi|48477963|ref|YP_023669.1| - 0.00011 22.0 0.0 0.0003 20.6 0.0 1.7 2 0 0 2 2 2 1 MarR family DUF2250 PF10007.9 gi|48477963|ref|YP_023669.1| - 0.001 19.1 0.2 0.003 17.6 0.0 1.7 2 1 0 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2250) MarR_2 PF12802.7 gi|48477963|ref|YP_023669.1| - 0.0016 18.3 0.0 0.0031 17.4 0.0 1.5 1 0 0 1 1 1 1 MarR family Fe_dep_repress PF01325.19 gi|48477963|ref|YP_023669.1| - 0.012 15.8 0.0 0.05 13.8 0.0 2.1 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain HTH_27 PF13463.6 gi|48477963|ref|YP_023669.1| - 0.012 16.1 0.1 0.04 14.4 0.0 1.8 2 0 0 2 2 2 0 Winged helix DNA-binding domain HEAT_UF PF18817.1 gi|48477963|ref|YP_023669.1| - 0.012 15.8 0.2 0.059 13.7 0.1 2.1 2 0 0 2 2 2 0 Repeat of uncharacterized protein PH0542 HxlR PF01638.17 gi|48477963|ref|YP_023669.1| - 0.013 15.3 0.2 0.16 11.9 0.0 2.5 3 0 0 3 3 3 0 HxlR-like helix-turn-helix Rrf2 PF02082.20 gi|48477963|ref|YP_023669.1| - 0.014 15.8 0.0 0.039 14.3 0.0 1.8 2 0 0 2 2 2 0 Transcriptional regulator tRNA-synt_2 PF00152.20 gi|48477964|ref|YP_023670.1| - 3.7e-50 170.8 0.1 4.5e-50 170.5 0.1 1.0 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) CoA_binding_2 PF13380.6 gi|48477965|ref|YP_023671.1| - 1.7e-39 134.9 0.0 1.9e-39 134.7 0.0 1.0 1 0 0 1 1 1 1 CoA binding domain CoA_binding PF02629.19 gi|48477965|ref|YP_023671.1| - 0.0058 17.3 0.0 0.0088 16.7 0.0 1.2 1 0 0 1 1 1 1 CoA binding domain PS_pyruv_trans PF04230.13 gi|48477965|ref|YP_023671.1| - 0.016 15.1 0.3 0.02 14.8 0.3 1.1 1 0 0 1 1 1 0 Polysaccharide pyruvyl transferase DapB_N PF01113.20 gi|48477965|ref|YP_023671.1| - 0.11 12.7 0.0 0.15 12.2 0.0 1.2 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus TFIIS_C PF01096.18 gi|48477966|ref|YP_023672.1| - 2.1e-19 69.1 13.0 2.2e-19 69.0 1.3 3.1 2 1 1 3 3 3 1 Transcription factor S-II (TFIIS) RNA_POL_M_15KD PF02150.16 gi|48477966|ref|YP_023672.1| - 1.5e-08 34.3 2.1 1.5e-08 34.3 2.1 3.1 3 0 0 3 3 3 1 RNA polymerases M/15 Kd subunit TF_Zn_Ribbon PF08271.12 gi|48477966|ref|YP_023672.1| - 3.2e-07 29.8 10.4 7.7e-05 22.1 1.2 3.0 2 1 0 2 2 2 2 TFIIB zinc-binding Zn_Tnp_IS1595 PF12760.7 gi|48477966|ref|YP_023672.1| - 4.7e-07 29.7 8.6 0.00022 21.1 0.9 2.3 2 0 0 2 2 2 2 Transposase zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|48477966|ref|YP_023672.1| - 1e-05 25.1 10.2 0.31 10.8 0.2 4.2 4 0 0 4 4 4 2 zinc-ribbon domain zf-RRN7 PF11781.8 gi|48477966|ref|YP_023672.1| - 2.7e-05 23.8 0.2 2.7e-05 23.8 0.2 3.1 3 0 0 3 3 3 1 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 DZR PF12773.7 gi|48477966|ref|YP_023672.1| - 0.00011 22.2 11.6 0.21 11.6 11.7 2.9 1 1 0 1 1 1 1 Double zinc ribbon OrfB_Zn_ribbon PF07282.11 gi|48477966|ref|YP_023672.1| - 0.00034 20.5 7.8 0.014 15.3 0.6 2.6 1 1 1 2 2 2 2 Putative transposase DNA-binding domain FYVE PF01363.21 gi|48477966|ref|YP_023672.1| - 0.0009 19.3 2.5 0.0051 16.9 2.5 2.0 1 1 0 1 1 1 1 FYVE zinc finger zf-ribbon_3 PF13248.6 gi|48477966|ref|YP_023672.1| - 0.0011 18.3 14.4 0.0099 15.3 3.2 3.6 3 1 0 3 3 3 1 zinc-ribbon domain TackOD1 PF18551.1 gi|48477966|ref|YP_023672.1| - 0.0018 17.9 3.7 0.31 10.7 0.3 2.2 1 1 1 2 2 2 2 Thaumarchaeal output domain 1 zinc_ribbon_10 PF10058.9 gi|48477966|ref|YP_023672.1| - 0.0019 17.9 9.1 0.027 14.2 0.2 3.2 2 1 0 2 2 2 1 Predicted integral membrane zinc-ribbon metal-binding protein zinc-ribbons_6 PF07191.12 gi|48477966|ref|YP_023672.1| - 0.0035 17.3 9.4 0.016 15.1 0.5 2.9 2 1 0 2 2 2 1 zinc-ribbons Rpr2 PF04032.16 gi|48477966|ref|YP_023672.1| - 0.0041 17.4 10.1 0.22 11.9 4.7 3.5 1 1 1 2 2 2 1 RNAse P Rpr2/Rpp21/SNM1 subunit domain PhnA_Zn_Ribbon PF08274.12 gi|48477966|ref|YP_023672.1| - 0.032 14.2 11.5 2.6 8.1 1.8 3.9 3 1 0 3 3 3 0 PhnA Zinc-Ribbon Zn-ribbon_8 PF09723.10 gi|48477966|ref|YP_023672.1| - 0.063 13.4 15.5 17 5.6 0.1 4.2 3 1 0 3 3 3 0 Zinc ribbon domain Nudix_N_2 PF14803.6 gi|48477966|ref|YP_023672.1| - 0.063 13.2 16.1 5.3 7.0 0.7 4.1 3 1 0 3 3 3 0 Nudix N-terminal A2L_zn_ribbon PF08792.10 gi|48477966|ref|YP_023672.1| - 0.1 12.4 11.1 3.2 7.6 0.1 4.2 5 0 0 5 5 4 0 A2L zinc ribbon domain Cys_rich_CPCC PF14206.6 gi|48477966|ref|YP_023672.1| - 0.15 11.9 0.2 0.15 11.9 0.2 2.7 2 1 0 3 3 3 0 Cysteine-rich CPCC zf-Mss51 PF13824.6 gi|48477966|ref|YP_023672.1| - 0.16 12.1 10.1 2.3 8.4 1.7 2.6 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 HypA PF01155.19 gi|48477966|ref|YP_023672.1| - 0.18 11.8 8.5 21 5.2 8.5 2.8 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA FdhE PF04216.12 gi|48477966|ref|YP_023672.1| - 0.19 11.6 0.1 0.19 11.6 0.1 1.9 2 0 0 2 2 2 0 Protein involved in formate dehydrogenase formation UPF0547 PF10571.9 gi|48477966|ref|YP_023672.1| - 0.19 11.8 17.7 1 9.5 0.4 4.1 4 0 0 4 4 4 0 Uncharacterised protein family UPF0547 zf_UBZ PF18439.1 gi|48477966|ref|YP_023672.1| - 0.2 11.3 10.0 9.2 6.0 0.1 4.1 4 0 0 4 4 4 0 Ubiquitin-Binding Zinc Finger zinc_ribbon_9 PF14369.6 gi|48477966|ref|YP_023672.1| - 0.21 11.9 0.2 0.21 11.9 0.2 3.7 4 0 0 4 4 4 0 zinc-ribbon Ribosomal_L32p PF01783.23 gi|48477966|ref|YP_023672.1| - 0.26 11.6 5.8 0.73 10.1 0.6 3.0 3 0 0 3 3 3 0 Ribosomal L32p protein family zf-RING_4 PF14570.6 gi|48477966|ref|YP_023672.1| - 0.31 10.9 9.4 6.4 6.7 0.1 3.6 3 1 0 3 3 3 0 RING/Ubox like zinc-binding domain Rubredoxin_2 PF18073.1 gi|48477966|ref|YP_023672.1| - 0.36 10.6 19.5 0.6 9.9 0.4 4.1 4 0 0 4 4 4 0 Rubredoxin metal binding domain GATA PF00320.27 gi|48477966|ref|YP_023672.1| - 0.41 10.3 10.0 1.1 8.9 0.1 3.3 3 1 0 3 3 2 0 GATA zinc finger Prim_Zn_Ribbon PF08273.12 gi|48477966|ref|YP_023672.1| - 0.44 10.9 9.0 0.67 10.3 0.1 3.7 4 0 0 4 4 4 0 Zinc-binding domain of primase-helicase TerY_C PF15616.6 gi|48477966|ref|YP_023672.1| - 0.46 10.6 6.1 1.6 8.9 0.6 2.4 1 1 1 2 2 2 0 TerY-C metal binding domain Rubredoxin PF00301.20 gi|48477966|ref|YP_023672.1| - 0.51 10.4 11.6 10 6.2 0.1 4.2 4 0 0 4 4 4 0 Rubredoxin DUF35_N PF12172.8 gi|48477966|ref|YP_023672.1| - 0.53 10.2 10.4 17 5.4 0.1 4.0 4 0 0 4 4 4 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zinc_ribbon_4 PF13717.6 gi|48477966|ref|YP_023672.1| - 0.64 10.0 10.9 11 6.1 0.1 3.9 3 1 0 3 3 3 0 zinc-ribbon domain zf-C4_Topoisom PF01396.19 gi|48477966|ref|YP_023672.1| - 0.67 9.8 0.2 0.67 9.8 0.2 3.5 2 2 1 3 3 3 0 Topoisomerase DNA binding C4 zinc finger zf-NADH-PPase PF09297.11 gi|48477966|ref|YP_023672.1| - 0.85 9.3 14.8 0.21 11.3 2.8 3.4 3 1 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain GFA PF04828.14 gi|48477966|ref|YP_023672.1| - 2.1 8.7 11.6 14 6.1 0.1 3.7 1 1 3 4 4 4 0 Glutathione-dependent formaldehyde-activating enzyme FYDLN_acid PF09538.10 gi|48477966|ref|YP_023672.1| - 2.1 9.0 5.4 8.3 7.1 0.5 2.8 1 1 1 2 2 2 0 Protein of unknown function (FYDLN_acid) DUF2387 PF09526.10 gi|48477966|ref|YP_023672.1| - 2.2 8.5 10.1 0.22 11.7 0.7 2.9 2 1 0 2 2 2 0 Probable metal-binding protein (DUF2387) zf-ACC PF17848.1 gi|48477966|ref|YP_023672.1| - 2.9 8.1 12.2 15 5.8 0.4 4.0 4 0 0 4 4 4 0 Acetyl-coA carboxylase zinc finger domain zf-ISL3 PF14690.6 gi|48477966|ref|YP_023672.1| - 3.4 8.4 11.8 3.7 8.3 0.7 3.8 3 1 1 4 4 4 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DUF1936 PF09151.10 gi|48477966|ref|YP_023672.1| - 5.3 7.0 14.0 7.7 6.5 0.4 3.8 4 0 0 4 4 4 0 Domain of unknown function (DUF1936) zf-IS66 PF13005.7 gi|48477966|ref|YP_023672.1| - 5.4 7.5 14.4 8.3 6.9 0.3 4.1 3 1 1 4 4 4 0 zinc-finger binding domain of transposase IS66 Lar_restr_allev PF14354.6 gi|48477966|ref|YP_023672.1| - 5.8 7.4 11.3 4.4 7.8 0.9 3.0 2 1 0 2 2 2 0 Restriction alleviation protein Lar zinc_ribbon_15 PF17032.5 gi|48477966|ref|YP_023672.1| - 6.1 7.7 13.8 12 6.7 6.6 3.1 1 1 0 2 2 2 0 zinc-ribbon family Cys_rich_KTR PF14205.6 gi|48477966|ref|YP_023672.1| - 6.2 6.7 6.4 11 5.9 0.4 2.9 3 0 0 3 3 2 0 Cysteine-rich KTR Auto_anti-p27 PF06677.12 gi|48477966|ref|YP_023672.1| - 7.2 6.9 14.1 0.69 10.1 2.3 3.0 2 1 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Ribosomal_L37e PF01907.19 gi|48477966|ref|YP_023672.1| - 8.1 6.7 13.3 6 7.1 0.5 3.0 3 1 0 3 3 3 0 Ribosomal protein L37e zf-H2C2_2 PF13465.6 gi|48477966|ref|YP_023672.1| - 8.8 7.0 12.2 5.6 7.6 0.1 3.9 4 0 0 4 4 4 0 Zinc-finger double domain SRP54 PF00448.22 gi|48477967|ref|YP_023673.1| - 2.8e-64 216.4 0.1 5.3e-64 215.5 0.1 1.5 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP_SPB PF02978.19 gi|48477967|ref|YP_023673.1| - 4.1e-22 78.7 0.3 7e-21 74.7 0.1 2.7 2 0 0 2 2 2 1 Signal peptide binding domain SRP54_N PF02881.19 gi|48477967|ref|YP_023673.1| - 4.1e-17 62.2 0.9 4.1e-17 62.2 0.9 4.1 5 0 0 5 5 5 1 SRP54-type protein, helical bundle domain CbiA PF01656.23 gi|48477967|ref|YP_023673.1| - 8.8e-06 25.8 0.0 5.4e-05 23.3 0.0 2.2 2 1 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain SRPRB PF09439.10 gi|48477967|ref|YP_023673.1| - 0.00053 19.5 1.3 0.012 15.0 0.1 2.7 2 0 0 2 2 2 1 Signal recognition particle receptor beta subunit AAA_17 PF13207.6 gi|48477967|ref|YP_023673.1| - 0.0014 19.0 1.3 0.0087 16.5 0.1 2.7 3 0 0 3 3 3 1 AAA domain ParA PF10609.9 gi|48477967|ref|YP_023673.1| - 0.011 15.2 0.0 0.021 14.3 0.0 1.4 1 0 0 1 1 1 0 NUBPL iron-transfer P-loop NTPase MobB PF03205.14 gi|48477967|ref|YP_023673.1| - 0.014 15.3 0.1 0.043 13.7 0.0 1.9 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B APS_kinase PF01583.20 gi|48477967|ref|YP_023673.1| - 0.018 15.0 0.0 0.033 14.1 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase MeaB PF03308.16 gi|48477967|ref|YP_023673.1| - 0.035 13.1 0.0 0.077 12.0 0.0 1.5 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA PF00004.29 gi|48477967|ref|YP_023673.1| - 0.035 14.5 3.0 0.54 10.7 0.0 3.6 3 1 0 3 3 3 0 ATPase family associated with various cellular activities (AAA) AAA_31 PF13614.6 gi|48477967|ref|YP_023673.1| - 0.078 12.9 1.6 0.52 10.2 0.0 2.9 3 0 0 3 3 3 0 AAA domain Phage_TAC_5 PF08890.11 gi|48477967|ref|YP_023673.1| - 0.1 12.6 0.1 0.1 12.6 0.1 3.1 3 0 0 3 3 3 0 Phage XkdN-like tail assembly chaperone protein, TAC MMR_HSR1 PF01926.23 gi|48477967|ref|YP_023673.1| - 0.25 11.4 3.0 0.29 11.2 0.8 2.3 2 1 0 2 2 2 0 50S ribosome-binding GTPase SpoVIF PF14069.6 gi|48477967|ref|YP_023673.1| - 0.47 10.3 6.1 0.77 9.6 0.6 3.2 3 0 0 3 3 3 0 Stage VI sporulation protein F FliE PF02049.18 gi|48477967|ref|YP_023673.1| - 0.95 9.7 3.2 4 7.6 0.1 2.9 3 0 0 3 3 3 0 Flagellar hook-basal body complex protein FliE FAD_binding_3 PF01494.19 gi|48477968|ref|YP_023674.1| - 1.1e-16 61.1 0.0 1e-15 57.9 0.0 2.1 1 1 0 1 1 1 1 FAD binding domain FAD_oxidored PF12831.7 gi|48477968|ref|YP_023674.1| - 7.7e-13 48.6 0.3 3.1e-12 46.6 0.2 1.9 2 1 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|48477968|ref|YP_023674.1| - 1.8e-12 47.0 0.3 1.9e-07 30.5 0.0 2.2 1 1 0 2 2 2 2 FAD binding domain DAO PF01266.24 gi|48477968|ref|YP_023674.1| - 7.9e-09 35.6 0.9 3.9e-06 26.7 0.1 2.5 1 1 1 2 2 2 2 FAD dependent oxidoreductase Trp_halogenase PF04820.14 gi|48477968|ref|YP_023674.1| - 5.8e-08 32.0 0.1 4.7e-05 22.4 0.0 2.1 1 1 1 2 2 2 2 Tryptophan halogenase Pyr_redox_2 PF07992.14 gi|48477968|ref|YP_023674.1| - 1.1e-07 31.4 0.0 1.9e-07 30.6 0.0 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|48477968|ref|YP_023674.1| - 1.6e-07 31.4 0.0 4e-07 30.2 0.0 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Lycopene_cycl PF05834.12 gi|48477968|ref|YP_023674.1| - 1.8e-07 30.6 0.0 4.4e-05 22.7 0.1 2.1 2 0 0 2 2 2 2 Lycopene cyclase protein HI0933_like PF03486.14 gi|48477968|ref|YP_023674.1| - 2.6e-07 29.7 1.1 1.5e-05 23.9 0.1 2.3 2 0 0 2 2 2 1 HI0933-like protein GIDA PF01134.22 gi|48477968|ref|YP_023674.1| - 1.2e-06 27.9 0.8 2.6e-06 26.8 0.2 2.0 2 1 0 2 2 2 1 Glucose inhibited division protein A Thi4 PF01946.17 gi|48477968|ref|YP_023674.1| - 1.6e-06 27.5 0.0 1.4e-05 24.5 0.0 2.1 2 0 0 2 2 2 1 Thi4 family AlaDh_PNT_C PF01262.21 gi|48477968|ref|YP_023674.1| - 0.0052 16.1 0.0 0.012 14.9 0.0 1.6 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox_3 PF13738.6 gi|48477968|ref|YP_023674.1| - 0.0052 16.1 0.0 0.015 14.5 0.0 1.8 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|48477968|ref|YP_023674.1| - 0.0098 16.4 0.1 0.066 13.8 0.0 2.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.18 gi|48477968|ref|YP_023674.1| - 0.018 15.0 1.5 0.18 11.7 0.0 2.8 3 0 0 3 3 3 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Ntox4 PF15541.6 gi|48477968|ref|YP_023674.1| - 0.019 15.3 0.0 0.13 12.6 0.0 2.1 2 0 0 2 2 2 0 Bacterial toxin 4 SurA_N_3 PF13624.6 gi|48477968|ref|YP_023674.1| - 0.07 12.9 0.2 0.14 11.9 0.2 1.5 1 1 0 1 1 1 0 SurA N-terminal domain Fer4 PF00037.27 gi|48477969|ref|YP_023675.1| - 3.1e-18 64.7 15.4 5.4e-09 35.5 2.3 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|48477969|ref|YP_023675.1| - 1.1e-14 54.7 35.8 4.5e-08 33.6 14.0 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|48477969|ref|YP_023675.1| - 2.8e-11 43.0 14.8 2.8e-07 30.3 4.0 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|48477969|ref|YP_023675.1| - 2.8e-10 40.2 20.7 1e-07 32.0 11.4 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|48477969|ref|YP_023675.1| - 8.9e-10 39.4 8.5 3.8e-05 24.5 0.5 2.1 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_10 PF13237.6 gi|48477969|ref|YP_023675.1| - 1.2e-08 34.9 22.2 4e-06 26.8 12.4 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|48477969|ref|YP_023675.1| - 2.3e-08 33.6 12.3 8.1e-05 22.5 2.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|48477969|ref|YP_023675.1| - 5.9e-08 32.7 10.6 9.9e-05 22.4 2.1 1.8 1 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|48477969|ref|YP_023675.1| - 3.9e-07 30.4 6.1 0.0017 18.7 0.6 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|48477969|ref|YP_023675.1| - 0.00013 22.2 14.2 0.0049 17.3 3.9 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|48477969|ref|YP_023675.1| - 0.00027 21.4 11.2 0.059 13.9 1.3 2.1 1 1 3 4 4 4 4 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|48477969|ref|YP_023675.1| - 0.00048 20.6 12.1 0.082 13.5 1.3 2.8 2 1 1 3 3 3 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_3 PF12798.7 gi|48477969|ref|YP_023675.1| - 0.0013 19.5 20.0 0.17 12.9 6.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.6 gi|48477969|ref|YP_023675.1| - 0.0033 17.6 10.7 0.075 13.2 2.5 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_11 PF13247.6 gi|48477969|ref|YP_023675.1| - 0.0037 17.4 2.6 0.0043 17.2 2.6 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|48477969|ref|YP_023675.1| - 0.0052 17.5 13.8 0.16 12.7 2.5 3.2 2 2 2 4 4 4 2 4Fe-4S single cluster domain ETF_QO PF05187.13 gi|48477969|ref|YP_023675.1| - 0.0091 16.1 1.4 0.011 15.9 1.4 1.2 1 0 0 1 1 1 1 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_22 PF17179.4 gi|48477969|ref|YP_023675.1| - 0.33 11.8 13.7 3.8 8.4 2.3 2.1 1 1 2 3 3 3 0 4Fe-4S dicluster domain HhH-GPD PF00730.25 gi|48477970|ref|YP_023676.1| - 2.1e-22 79.6 0.0 3.1e-22 79.1 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.23 gi|48477970|ref|YP_023676.1| - 1.8e-07 30.7 0.0 4.9e-07 29.3 0.0 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|48477970|ref|YP_023676.1| - 2.3e-05 24.9 0.1 0.4 11.3 0.0 2.3 2 0 0 2 2 2 2 Helix-hairpin-helix domain HHH_2 PF12826.7 gi|48477970|ref|YP_023676.1| - 0.0017 18.4 0.0 0.68 10.1 0.0 2.3 2 0 0 2 2 2 2 Helix-hairpin-helix motif DUF763 PF05559.11 gi|48477970|ref|YP_023676.1| - 0.016 14.4 0.0 0.023 13.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF763) DUF3173 PF11372.8 gi|48477970|ref|YP_023676.1| - 0.098 12.5 0.4 9.5 6.2 0.1 3.0 3 0 0 3 3 3 0 Domain of unknown function (DUF3173) EndIII_4Fe-2S PF10576.9 gi|48477970|ref|YP_023676.1| - 4.8 7.7 8.7 7.5 7.0 8.7 1.3 1 0 0 1 1 1 0 Iron-sulfur binding domain of endonuclease III CPSase_L_D2 PF02786.17 gi|48477971|ref|YP_023677.1| - 1.4e-84 282.9 0.1 2.3e-61 207.0 0.0 2.3 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_D3 PF02787.19 gi|48477971|ref|YP_023677.1| - 4e-33 114.4 0.1 2.6e-32 111.7 0.0 2.3 2 0 0 2 2 2 1 Carbamoyl-phosphate synthetase large chain, oligomerisation domain MGS PF02142.22 gi|48477971|ref|YP_023677.1| - 9.7e-19 67.4 0.3 3.4e-17 62.4 0.0 3.3 3 0 0 3 3 3 1 MGS-like domain ATPgrasp_Ter PF15632.6 gi|48477971|ref|YP_023677.1| - 9.9e-13 48.0 0.1 6.8e-06 25.9 0.0 2.7 3 0 0 3 3 3 2 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_3 PF02655.14 gi|48477971|ref|YP_023677.1| - 4.1e-12 46.4 2.4 3.9e-07 30.2 0.4 2.7 2 0 0 2 2 2 2 ATP-grasp domain ATP-grasp PF02222.22 gi|48477971|ref|YP_023677.1| - 8.2e-12 45.0 0.0 9.9e-06 25.2 0.0 2.4 2 0 0 2 2 2 2 ATP-grasp domain Dala_Dala_lig_C PF07478.13 gi|48477971|ref|YP_023677.1| - 4.2e-08 33.0 2.3 0.0013 18.3 0.0 2.9 3 0 0 3 3 3 2 D-ala D-ala ligase C-terminus GARS_A PF01071.19 gi|48477971|ref|YP_023677.1| - 6.6e-06 26.0 0.1 4.6e-05 23.3 0.1 2.2 1 1 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain B3 PF02362.21 gi|48477971|ref|YP_023677.1| - 0.16 11.9 0.0 0.33 10.8 0.0 1.5 1 0 0 1 1 1 0 B3 DNA binding domain CPSase_sm_chain PF00988.22 gi|48477972|ref|YP_023678.1| - 1.9e-43 147.4 0.0 3.5e-43 146.5 0.0 1.4 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase small chain, CPSase domain GATase PF00117.28 gi|48477972|ref|YP_023678.1| - 2.2e-35 122.2 0.0 2.8e-35 121.8 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|48477972|ref|YP_023678.1| - 6.6e-06 26.0 0.1 0.01 15.6 0.0 2.2 1 1 1 2 2 2 2 Peptidase C26 DUF1059 PF06348.11 gi|48477973|ref|YP_023679.1| - 5.1e-25 87.5 0.3 5.6e-25 87.3 0.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1059) MatE PF01554.18 gi|48477974|ref|YP_023680.1| - 0.0026 17.5 3.6 0.0032 17.2 3.6 1.2 1 0 0 1 1 1 1 MatE PMT_4TMC PF16192.5 gi|48477974|ref|YP_023680.1| - 0.045 13.4 1.3 0.051 13.2 1.3 1.0 1 0 0 1 1 1 0 C-terminal four TMM region of protein-O-mannosyltransferase Reo_sigmaC PF04582.12 gi|48477974|ref|YP_023680.1| - 0.097 12.9 0.1 0.11 12.7 0.1 1.1 1 0 0 1 1 1 0 Reovirus sigma C capsid protein C-terminal domain AAA_10 PF12846.7 gi|48477976|ref|YP_023682.1| - 7.7e-07 28.3 1.8 0.00052 19.0 0.5 2.2 1 1 1 2 2 2 2 AAA-like domain AAA_22 PF13401.6 gi|48477976|ref|YP_023682.1| - 6.2e-06 26.5 0.0 2.7e-05 24.5 0.0 2.1 1 1 0 1 1 1 1 AAA domain DUF87 PF01935.17 gi|48477976|ref|YP_023682.1| - 5.8e-05 23.3 0.7 0.00026 21.1 0.7 2.2 1 1 0 1 1 1 1 Helicase HerA, central domain ATPase_2 PF01637.18 gi|48477976|ref|YP_023682.1| - 6.7e-05 22.9 2.4 6.7e-05 22.9 2.4 2.2 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea ResIII PF04851.15 gi|48477976|ref|YP_023682.1| - 0.0003 20.8 0.9 0.0072 16.3 0.9 2.4 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_14 PF13173.6 gi|48477976|ref|YP_023682.1| - 0.00041 20.4 1.6 0.0057 16.7 1.6 2.6 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|48477976|ref|YP_023682.1| - 0.0034 17.8 0.0 0.0081 16.6 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) PhoH PF02562.16 gi|48477976|ref|YP_023682.1| - 0.0067 15.9 0.3 0.95 8.9 0.0 2.5 2 0 0 2 2 2 1 PhoH-like protein T2SSE PF00437.20 gi|48477976|ref|YP_023682.1| - 0.01 14.9 0.0 0.019 14.0 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein TraG-D_C PF12696.7 gi|48477976|ref|YP_023682.1| - 0.014 15.3 0.2 0.027 14.5 0.2 1.3 1 0 0 1 1 1 0 TraM recognition site of TraD and TraG AAA_30 PF13604.6 gi|48477976|ref|YP_023682.1| - 0.014 15.1 0.0 0.023 14.4 0.0 1.2 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|48477976|ref|YP_023682.1| - 0.015 14.5 0.0 0.032 13.5 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin AAA_5 PF07728.14 gi|48477976|ref|YP_023682.1| - 0.034 14.1 0.0 0.39 10.7 0.0 2.1 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_7 PF12775.7 gi|48477976|ref|YP_023682.1| - 0.059 12.9 0.0 0.17 11.4 0.0 1.8 1 1 0 1 1 1 0 P-loop containing dynein motor region AAA_24 PF13479.6 gi|48477976|ref|YP_023682.1| - 0.084 12.6 0.0 0.15 11.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain ATPase PF06745.13 gi|48477976|ref|YP_023682.1| - 0.13 11.6 1.6 0.22 10.8 0.7 1.9 2 1 0 2 2 2 0 KaiC AAA_16 PF13191.6 gi|48477976|ref|YP_023682.1| - 0.14 12.6 0.0 0.35 11.2 0.0 1.7 1 1 0 1 1 1 0 AAA ATPase domain DUF99 PF01949.16 gi|48477977|ref|YP_023683.1| - 7.3e-56 188.5 0.3 8.3e-56 188.3 0.3 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF99 Pribosyltran_N PF13793.6 gi|48477978|ref|YP_023684.1| - 2.8e-25 88.5 0.1 4.4e-23 81.4 0.0 2.4 2 1 0 2 2 2 2 N-terminal domain of ribose phosphate pyrophosphokinase Pribosyltran PF00156.27 gi|48477978|ref|YP_023684.1| - 3.1e-17 62.5 0.8 1.3e-16 60.5 0.3 2.0 2 0 0 2 2 2 1 Phosphoribosyl transferase domain Pribosyl_synth PF14572.6 gi|48477978|ref|YP_023684.1| - 1.9e-10 41.1 0.9 4.3e-10 39.9 0.9 1.6 1 1 0 1 1 1 1 Phosphoribosyl synthetase-associated domain UPRTase PF14681.6 gi|48477978|ref|YP_023684.1| - 1.6e-07 31.0 0.1 4.7e-07 29.5 0.1 1.8 2 0 0 2 2 2 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|48477978|ref|YP_023684.1| - 0.0015 18.0 0.2 0.0047 16.4 0.1 1.9 2 1 0 2 2 2 1 Phosphoribosyl transferase Intein_splicing PF14890.6 gi|48477978|ref|YP_023684.1| - 0.0082 16.1 0.1 0.028 14.3 0.1 1.8 1 1 1 2 2 2 1 Intein splicing domain SGL PF08450.12 gi|48477979|ref|YP_023685.1| - 6.7e-68 228.9 0.1 7.6e-68 228.7 0.1 1.0 1 0 0 1 1 1 1 SMP-30/Gluconolactonase/LRE-like region Arylesterase PF01731.20 gi|48477979|ref|YP_023685.1| - 0.0003 20.9 0.0 0.0035 17.5 0.0 2.3 2 0 0 2 2 2 1 Arylesterase Str_synth PF03088.16 gi|48477979|ref|YP_023685.1| - 0.012 15.7 0.0 0.031 14.4 0.0 1.7 1 1 0 1 1 1 0 Strictosidine synthase RINT1_TIP1 PF04437.13 gi|48477979|ref|YP_023685.1| - 0.24 10.2 0.0 0.31 9.9 0.0 1.1 1 0 0 1 1 1 0 RINT-1 / TIP-1 family ACT PF01842.25 gi|48477980|ref|YP_023686.1| - 3.2e-05 23.6 0.2 6.4e-05 22.6 0.2 1.5 1 0 0 1 1 1 1 ACT domain ACT_4 PF13291.6 gi|48477980|ref|YP_023686.1| - 0.016 15.8 0.1 0.41 11.3 0.0 2.5 2 0 0 2 2 2 0 ACT domain HTH_38 PF13936.6 gi|48477980|ref|YP_023686.1| - 0.023 14.4 0.0 0.16 11.7 0.0 2.2 1 1 0 1 1 1 0 Helix-turn-helix domain ACT_7 PF13840.6 gi|48477980|ref|YP_023686.1| - 0.053 13.3 0.0 0.094 12.5 0.0 1.5 1 0 0 1 1 1 0 ACT domain DUF3834 PF12916.7 gi|48477981|ref|YP_023687.1| - 2.8e-84 281.4 1.5 3.3e-84 281.2 1.5 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3834) SBP_bac_3 PF00497.20 gi|48477981|ref|YP_023687.1| - 0.00044 19.8 0.0 0.00064 19.2 0.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 CBM60 PF16841.5 gi|48477981|ref|YP_023687.1| - 0.011 16.2 0.2 3 8.3 0.0 2.3 1 1 1 2 2 2 0 Ca-dependent carbohydrate-binding module xylan-binding Iso_dh PF00180.20 gi|48477982|ref|YP_023688.1| - 7.8e-65 219.3 0.0 1.1e-64 218.9 0.0 1.1 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase DUF4183 PF13799.6 gi|48477982|ref|YP_023688.1| - 0.076 12.8 0.0 0.2 11.5 0.0 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF4183) Aconitase_C PF00694.19 gi|48477983|ref|YP_023689.1| - 1.1e-20 74.3 0.4 6.7e-20 71.8 0.4 1.8 1 1 1 2 2 2 1 Aconitase C-terminal domain Aconitase_2_N PF06434.13 gi|48477983|ref|YP_023689.1| - 1.8e-06 27.7 0.4 5.5e-05 22.9 0.4 2.1 1 1 0 1 1 1 1 Aconitate hydratase 2 N-terminus PEP-utilizers PF00391.23 gi|48477983|ref|YP_023689.1| - 0.0056 16.4 0.0 0.011 15.4 0.0 1.5 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain Aconitase PF00330.20 gi|48477984|ref|YP_023690.1| - 1.4e-98 330.9 0.1 2.4e-96 323.5 0.1 2.3 1 1 0 1 1 1 1 Aconitase family (aconitate hydratase) DUF521 PF04412.13 gi|48477984|ref|YP_023690.1| - 3.1e-05 22.9 0.0 4.4e-05 22.4 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF521) HMGL-like PF00682.19 gi|48477985|ref|YP_023691.1| - 1.1e-86 290.7 2.1 1.3e-86 290.4 2.1 1.1 1 0 0 1 1 1 1 HMGL-like HTH_34 PF13601.6 gi|48477986|ref|YP_023692.1| - 7.4e-12 45.3 0.0 1e-11 44.8 0.0 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain HxlR PF01638.17 gi|48477986|ref|YP_023692.1| - 1.9e-06 27.6 0.0 2.5e-06 27.2 0.0 1.3 1 0 0 1 1 1 1 HxlR-like helix-turn-helix PadR PF03551.14 gi|48477986|ref|YP_023692.1| - 7.4e-06 25.8 0.0 1e-05 25.4 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_20 PF12840.7 gi|48477986|ref|YP_023692.1| - 6.3e-05 23.0 0.0 8.7e-05 22.5 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|48477986|ref|YP_023692.1| - 0.0002 21.1 0.0 0.00037 20.3 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_45 PF14947.6 gi|48477986|ref|YP_023692.1| - 0.0017 18.3 0.1 0.0026 17.7 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix MarR PF01047.22 gi|48477986|ref|YP_023692.1| - 0.0023 17.8 0.0 0.0037 17.2 0.0 1.3 1 0 0 1 1 1 1 MarR family DUF3116 PF11313.8 gi|48477986|ref|YP_023692.1| - 0.094 12.6 0.2 0.16 11.8 0.0 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3116) MarR_2 PF12802.7 gi|48477986|ref|YP_023692.1| - 0.15 11.9 0.0 0.22 11.4 0.0 1.2 1 0 0 1 1 1 0 MarR family ABC2_membrane PF01061.24 gi|48477988|ref|YP_023694.1| - 0.38 10.1 44.1 0.032 13.6 38.1 1.9 2 0 0 2 2 2 0 ABC-2 type transporter ABC_tran PF00005.27 gi|48477989|ref|YP_023695.1| - 9.5e-14 52.1 0.0 1.8e-13 51.2 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|48477989|ref|YP_023695.1| - 2.4e-10 40.7 2.8 2.8e-05 24.1 0.3 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|48477989|ref|YP_023695.1| - 4.8e-06 26.2 4.4 0.026 14.0 1.0 2.2 1 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|48477989|ref|YP_023695.1| - 3.5e-05 24.4 1.1 5.2e-05 23.8 1.1 1.4 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|48477989|ref|YP_023695.1| - 0.00018 21.2 0.1 0.0004 20.1 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|48477989|ref|YP_023695.1| - 0.00023 21.0 1.4 0.00029 20.7 1.4 1.3 1 0 0 1 1 1 1 AAA ATPase domain SbcCD_C PF13558.6 gi|48477989|ref|YP_023695.1| - 0.00033 20.8 0.2 0.012 15.9 0.1 2.3 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit RsgA_GTPase PF03193.16 gi|48477989|ref|YP_023695.1| - 0.001 19.0 0.2 0.0017 18.3 0.2 1.3 1 0 0 1 1 1 1 RsgA GTPase AAA_33 PF13671.6 gi|48477989|ref|YP_023695.1| - 0.0024 18.1 0.0 0.0078 16.4 0.0 1.8 1 1 0 1 1 1 1 AAA domain MMR_HSR1 PF01926.23 gi|48477989|ref|YP_023695.1| - 0.0083 16.2 0.4 0.012 15.7 0.4 1.5 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_16 PF13191.6 gi|48477989|ref|YP_023695.1| - 0.014 15.8 0.0 0.02 15.3 0.0 1.3 1 1 0 1 1 1 0 AAA ATPase domain AAA PF00004.29 gi|48477989|ref|YP_023695.1| - 0.028 14.8 0.0 0.046 14.2 0.0 1.3 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) TsaE PF02367.17 gi|48477989|ref|YP_023695.1| - 0.033 14.2 0.1 0.061 13.3 0.1 1.5 1 1 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE T2SSE PF00437.20 gi|48477989|ref|YP_023695.1| - 0.034 13.2 0.7 0.092 11.8 0.4 1.7 2 0 0 2 2 2 0 Type II/IV secretion system protein GTP_EFTU PF00009.27 gi|48477989|ref|YP_023695.1| - 0.037 13.6 0.1 0.06 12.9 0.1 1.4 1 0 0 1 1 1 0 Elongation factor Tu GTP binding domain AAA_30 PF13604.6 gi|48477989|ref|YP_023695.1| - 0.054 13.2 0.0 0.074 12.8 0.0 1.2 1 0 0 1 1 1 0 AAA domain cobW PF02492.19 gi|48477989|ref|YP_023695.1| - 0.059 13.0 0.1 0.12 12.0 0.1 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain ATP_bind_1 PF03029.17 gi|48477989|ref|YP_023695.1| - 0.061 13.1 0.0 0.16 11.8 0.0 1.7 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein IF3_N PF05198.16 gi|48477989|ref|YP_023695.1| - 0.074 13.3 0.0 2.7 8.3 0.0 2.3 2 0 0 2 2 2 0 Translation initiation factor IF-3, N-terminal domain AAA_22 PF13401.6 gi|48477989|ref|YP_023695.1| - 0.078 13.2 0.4 0.13 12.5 0.4 1.6 1 1 0 1 1 1 0 AAA domain G-alpha PF00503.20 gi|48477989|ref|YP_023695.1| - 0.1 11.7 0.1 0.1 11.7 0.1 1.1 1 0 0 1 1 1 0 G-protein alpha subunit PduV-EutP PF10662.9 gi|48477989|ref|YP_023695.1| - 0.12 12.1 0.4 0.3 10.8 0.3 1.7 1 1 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation DUF362 PF04015.12 gi|48477989|ref|YP_023695.1| - 0.15 12.3 0.0 0.3 11.3 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF362) ABC_ATPase PF09818.9 gi|48477989|ref|YP_023695.1| - 0.27 10.0 1.4 0.41 9.4 1.4 1.2 1 0 0 1 1 1 0 Predicted ATPase of the ABC class DUF3584 PF12128.8 gi|48477989|ref|YP_023695.1| - 0.28 8.7 0.7 0.38 8.2 0.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) GlutR_N PF05201.15 gi|48477990|ref|YP_023696.1| - 7.7e-30 103.6 0.2 1.9e-29 102.3 0.0 1.7 2 0 0 2 2 2 1 Glutamyl-tRNAGlu reductase, N-terminal domain Shikimate_DH PF01488.20 gi|48477990|ref|YP_023696.1| - 1.1e-21 77.4 0.0 2.3e-21 76.3 0.0 1.6 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase GlutR_dimer PF00745.20 gi|48477990|ref|YP_023696.1| - 2.6e-12 47.0 1.7 7.3e-12 45.6 1.2 2.1 1 1 1 2 2 2 1 Glutamyl-tRNAGlu reductase, dimerisation domain 2-Hacid_dh_C PF02826.19 gi|48477990|ref|YP_023696.1| - 0.028 13.8 0.0 0.054 12.9 0.0 1.5 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_7 PF13241.6 gi|48477990|ref|YP_023696.1| - 0.048 14.1 0.0 0.13 12.7 0.0 1.8 1 0 0 1 1 1 0 Putative NAD(P)-binding Ripply PF14998.6 gi|48477990|ref|YP_023696.1| - 0.16 12.6 0.1 0.38 11.4 0.1 1.6 1 0 0 1 1 1 0 Transcription Regulator UDG PF03167.19 gi|48477991|ref|YP_023697.1| - 7.8e-37 126.6 0.0 1.2e-36 126.1 0.0 1.2 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily NUDIX PF00293.28 gi|48477991|ref|YP_023697.1| - 5.1e-15 55.7 0.0 1.1e-14 54.6 0.0 1.5 2 0 0 2 2 2 1 NUDIX domain PhoU PF01895.19 gi|48477992|ref|YP_023698.1| - 0.073 13.5 2.6 0.13 12.7 2.3 1.6 1 1 0 1 1 1 0 PhoU domain HTH_45 PF14947.6 gi|48477993|ref|YP_023699.1| - 8.1e-17 61.0 4.1 1.4e-16 60.2 4.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DUF4364 PF14277.6 gi|48477993|ref|YP_023699.1| - 0.00049 19.9 0.9 0.00049 19.9 0.9 1.9 2 1 0 2 2 2 1 Domain of unknown function (DUF4364) MarR PF01047.22 gi|48477993|ref|YP_023699.1| - 0.0063 16.4 0.0 0.027 14.4 0.0 2.1 1 1 1 2 2 2 1 MarR family TrmB PF01978.19 gi|48477993|ref|YP_023699.1| - 0.026 14.4 0.3 2.8 7.9 0.2 2.5 1 1 1 2 2 2 0 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|48477993|ref|YP_023699.1| - 0.08 12.8 0.0 0.19 11.6 0.0 1.6 2 0 0 2 2 2 0 MarR family Rrf2 PF02082.20 gi|48477993|ref|YP_023699.1| - 0.081 13.3 0.0 0.17 12.2 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator Peptidase_M73 PF12389.8 gi|48477994|ref|YP_023700.1| - 0.001 18.9 0.2 0.27 11.0 0.0 2.7 3 0 0 3 3 3 2 Camelysin metallo-endopeptidase DUF5305 PF17231.2 gi|48477995|ref|YP_023701.1| - 1.6e-10 40.8 5.2 1.6e-10 40.8 5.2 2.0 3 0 0 3 3 3 1 Family of unknown function (DUF5305) Peptidase_S24 PF00717.23 gi|48477996|ref|YP_023702.1| - 2.8e-05 24.0 0.0 7.6e-05 22.6 0.0 1.8 1 0 0 1 1 1 1 Peptidase S24-like DUF1772 PF08592.11 gi|48477996|ref|YP_023702.1| - 1.1 9.6 10.6 1.3 9.4 0.9 3.2 1 1 1 3 3 3 0 Domain of unknown function (DUF1772) HTH_24 PF13412.6 gi|48477997|ref|YP_023703.1| - 0.00027 20.4 0.0 0.0041 16.7 0.0 2.6 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding Fe_dep_repress PF01325.19 gi|48477997|ref|YP_023703.1| - 0.0017 18.5 0.0 0.22 11.7 0.0 2.7 3 0 0 3 3 3 1 Iron dependent repressor, N-terminal DNA binding domain MarR_2 PF12802.7 gi|48477997|ref|YP_023703.1| - 0.0027 17.6 0.0 0.0098 15.8 0.0 1.8 2 0 0 2 2 2 1 MarR family Rad10 PF03834.14 gi|48478000|ref|YP_023706.1| - 0.17 11.9 1.8 3.5 7.7 1.8 2.0 1 1 1 2 2 2 0 Binding domain of DNA repair protein Ercc1 (rad10/Swi10) B PF02216.16 gi|48478000|ref|YP_023706.1| - 0.22 11.5 2.3 30 4.7 0.0 3.1 2 1 1 3 3 3 0 B domain Proton_antipo_M PF00361.20 gi|48478001|ref|YP_023707.1| - 9.2e-46 156.4 32.3 9.2e-46 156.4 32.3 2.3 2 0 0 2 2 2 1 Proton-conducting membrane transporter Proton_antipo_M PF00361.20 gi|48478002|ref|YP_023708.1| - 6.5e-72 242.2 31.5 6.5e-72 242.2 31.5 3.3 3 1 1 4 4 4 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|48478002|ref|YP_023708.1| - 7.9e-11 41.9 4.1 7.9e-11 41.9 4.1 4.2 5 0 0 5 5 5 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus NADH5_C PF06455.11 gi|48478002|ref|YP_023708.1| - 3.4e-06 26.8 8.2 3.4e-06 26.8 8.2 5.3 2 2 1 4 4 4 1 NADH dehydrogenase subunit 5 C-terminus ATPase_2 PF01637.18 gi|48478003|ref|YP_023709.1| - 3e-16 60.0 2.7 4.8e-16 59.4 2.7 1.2 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_14 PF13173.6 gi|48478003|ref|YP_023709.1| - 5.4e-10 39.4 0.4 0.00028 20.9 0.1 2.4 1 1 1 2 2 2 2 AAA domain AAA_35 PF14516.6 gi|48478003|ref|YP_023709.1| - 1.5e-07 30.6 0.4 5.8e-06 25.4 0.4 2.1 1 1 0 1 1 1 1 AAA-like domain AAA_16 PF13191.6 gi|48478003|ref|YP_023709.1| - 2.2e-07 31.4 0.0 4e-07 30.6 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|48478003|ref|YP_023709.1| - 3e-07 30.8 0.0 5.6e-06 26.7 0.0 2.2 1 1 0 1 1 1 1 AAA domain DUF512 PF04459.12 gi|48478003|ref|YP_023709.1| - 0.098 11.9 0.0 0.18 11.1 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF512) AAA_7 PF12775.7 gi|48478003|ref|YP_023709.1| - 0.1 12.1 0.1 0.28 10.7 0.0 1.8 2 0 0 2 2 2 0 P-loop containing dynein motor region UbiA PF01040.18 gi|48478004|ref|YP_023710.1| - 2.3e-35 122.1 18.0 2.9e-35 121.8 18.0 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family AA_permease_2 PF13520.6 gi|48478005|ref|YP_023711.1| - 3e-45 154.9 64.9 3e-45 154.9 64.9 2.1 1 1 1 2 2 2 1 Amino acid permease AA_permease PF00324.21 gi|48478005|ref|YP_023711.1| - 6.6e-31 107.4 64.6 6.6e-31 107.4 64.6 2.0 1 1 1 2 2 2 2 Amino acid permease MPS2 PF17060.5 gi|48478005|ref|YP_023711.1| - 0.17 11.2 0.3 12 5.1 0.0 2.3 2 0 0 2 2 2 0 Monopolar spindle protein 2 PQQ_3 PF13570.6 gi|48478005|ref|YP_023711.1| - 1.6 9.3 5.7 22 5.7 0.4 2.7 2 0 0 2 2 2 0 PQQ-like domain MqsA_antitoxin PF15731.5 gi|48478006|ref|YP_023712.1| - 0.00011 22.3 0.3 0.00012 22.2 0.3 1.0 1 0 0 1 1 1 1 Antitoxin component of bacterial toxin-antitoxin system, MqsA zf-TFIIB PF13453.6 gi|48478006|ref|YP_023712.1| - 0.00015 21.0 0.1 0.00019 20.7 0.1 1.2 1 0 0 1 1 1 1 Transcription factor zinc-finger DUF3268 PF11672.8 gi|48478006|ref|YP_023712.1| - 0.00027 21.2 0.7 0.00028 21.2 0.7 1.1 1 0 0 1 1 1 1 zinc-finger-containing domain TF_Zn_Ribbon PF08271.12 gi|48478006|ref|YP_023712.1| - 0.00079 18.9 1.3 0.016 14.7 0.2 2.2 2 0 0 2 2 2 1 TFIIB zinc-binding zinc_ribbon_2 PF13240.6 gi|48478006|ref|YP_023712.1| - 0.0012 18.5 2.4 0.11 12.2 0.2 2.3 2 0 0 2 2 2 1 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|48478006|ref|YP_023712.1| - 0.0016 17.8 2.6 0.42 10.1 0.1 2.2 2 0 0 2 2 2 2 zinc-ribbon domain zf-C2H2 PF00096.26 gi|48478006|ref|YP_023712.1| - 0.0027 18.0 2.5 0.048 14.1 0.4 2.2 2 0 0 2 2 2 1 Zinc finger, C2H2 type DZR PF12773.7 gi|48478006|ref|YP_023712.1| - 0.0032 17.4 0.1 0.005 16.8 0.1 1.4 1 1 0 1 1 1 1 Double zinc ribbon zinc_ribbon_9 PF14369.6 gi|48478006|ref|YP_023712.1| - 0.0036 17.5 2.4 0.72 10.2 0.1 2.2 2 0 0 2 2 2 1 zinc-ribbon Lar_restr_allev PF14354.6 gi|48478006|ref|YP_023712.1| - 0.0057 17.0 1.7 0.037 14.4 1.7 1.9 1 1 0 1 1 1 1 Restriction alleviation protein Lar zf_UBZ PF18439.1 gi|48478006|ref|YP_023712.1| - 0.0062 16.1 0.9 1.5 8.4 0.1 2.1 2 0 0 2 2 2 1 Ubiquitin-Binding Zinc Finger A2L_zn_ribbon PF08792.10 gi|48478006|ref|YP_023712.1| - 0.0073 16.0 1.8 2.6 7.9 0.1 2.2 2 0 0 2 2 2 2 A2L zinc ribbon domain zf-C2H2_4 PF13894.6 gi|48478006|ref|YP_023712.1| - 0.0078 17.0 2.2 0.55 11.2 0.3 2.3 2 0 0 2 2 2 1 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 gi|48478006|ref|YP_023712.1| - 0.0085 16.2 1.6 1.1 9.5 0.3 2.2 2 0 0 2 2 2 1 Zinc ribbon domain Terminase_GpA PF05876.12 gi|48478006|ref|YP_023712.1| - 0.012 14.2 0.1 0.012 14.2 0.1 1.0 1 0 0 1 1 1 0 Phage terminase large subunit (GpA) zf-C2HC_2 PF13913.6 gi|48478006|ref|YP_023712.1| - 0.013 15.4 5.6 0.035 14.0 0.5 2.2 2 0 0 2 2 2 0 zinc-finger of a C2HC-type GFA PF04828.14 gi|48478006|ref|YP_023712.1| - 0.013 15.8 1.0 0.13 12.6 0.0 2.0 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme zf-C4_Topoisom PF01396.19 gi|48478006|ref|YP_023712.1| - 0.014 15.1 0.4 1.3 8.8 0.1 2.3 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger DUF2225 PF09986.9 gi|48478006|ref|YP_023712.1| - 0.018 14.8 0.4 0.018 14.8 0.4 1.9 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2225) Zn_Tnp_IS1595 PF12760.7 gi|48478006|ref|YP_023712.1| - 0.024 14.6 5.3 0.49 10.4 0.2 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zf-ISL3 PF14690.6 gi|48478006|ref|YP_023712.1| - 0.03 15.0 0.2 5.1 7.8 0.0 2.2 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Zn_ribbon_SprT PF17283.2 gi|48478006|ref|YP_023712.1| - 0.033 14.1 1.6 0.57 10.1 0.2 2.3 2 0 0 2 2 2 0 SprT-like zinc ribbon domain Thioredoxin_4 PF13462.6 gi|48478006|ref|YP_023712.1| - 0.035 14.3 0.5 0.12 12.5 0.1 1.8 2 0 0 2 2 2 0 Thioredoxin zinc-ribbons_6 PF07191.12 gi|48478006|ref|YP_023712.1| - 0.035 14.1 0.1 0.047 13.7 0.1 1.3 1 0 0 1 1 1 0 zinc-ribbons DUF2256 PF10013.9 gi|48478006|ref|YP_023712.1| - 0.037 14.1 0.3 4.5 7.5 0.0 2.2 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2256) DUF35_N PF12172.8 gi|48478006|ref|YP_023712.1| - 0.037 13.9 2.7 0.6 10.1 0.1 2.1 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Zn_ribbon_recom PF13408.6 gi|48478006|ref|YP_023712.1| - 0.046 14.2 0.7 0.16 12.5 0.7 1.9 1 1 0 1 1 1 0 Recombinase zinc beta ribbon domain Prok-RING_1 PF14446.6 gi|48478006|ref|YP_023712.1| - 0.05 13.5 1.4 3.7 7.5 0.0 2.2 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 zf-NADH-PPase PF09297.11 gi|48478006|ref|YP_023712.1| - 0.066 12.9 4.7 0.87 9.3 0.4 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zf-C2H2_jaz PF12171.8 gi|48478006|ref|YP_023712.1| - 0.066 13.5 2.0 1.4 9.3 0.1 2.2 2 0 0 2 2 2 0 Zinc-finger double-stranded RNA-binding CpXC PF14353.6 gi|48478006|ref|YP_023712.1| - 0.066 13.2 1.4 1.8 8.6 0.1 2.0 1 1 1 2 2 2 0 CpXC protein zf-Mss51 PF13824.6 gi|48478006|ref|YP_023712.1| - 0.072 13.2 0.6 0.11 12.6 0.6 1.4 1 1 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 DUF1610 PF07754.11 gi|48478006|ref|YP_023712.1| - 0.072 13.1 0.1 0.072 13.1 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) zf_C2H2_6 PF18450.1 gi|48478006|ref|YP_023712.1| - 0.073 12.8 0.7 7 6.5 0.1 2.3 2 0 0 2 2 2 0 Zinc Finger domain Sgf11 PF08209.11 gi|48478006|ref|YP_023712.1| - 0.077 12.6 0.2 0.077 12.6 0.2 2.0 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) Ogr_Delta PF04606.12 gi|48478006|ref|YP_023712.1| - 0.086 12.8 4.2 0.53 10.3 4.2 1.9 1 1 0 1 1 1 0 Ogr/Delta-like zinc finger zf-FPG_IleRS PF06827.14 gi|48478006|ref|YP_023712.1| - 0.094 12.6 2.8 1.7 8.6 0.0 2.2 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS UPF0547 PF10571.9 gi|48478006|ref|YP_023712.1| - 0.098 12.8 3.6 2.5 8.2 0.3 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 YacG PF03884.14 gi|48478006|ref|YP_023712.1| - 0.1 12.3 0.7 13 5.6 0.1 2.1 2 0 0 2 2 2 0 DNA gyrase inhibitor YacG Rad50_zn_hook PF04423.14 gi|48478006|ref|YP_023712.1| - 0.11 12.4 0.2 0.51 10.2 0.0 1.9 2 0 0 2 2 2 0 Rad50 zinc hook motif zf-C2H2_9 PF16293.5 gi|48478006|ref|YP_023712.1| - 0.12 12.2 0.4 15 5.5 0.2 2.1 2 0 0 2 2 2 0 C2H2 type zinc-finger (1 copy) zinc_ribbon_4 PF13717.6 gi|48478006|ref|YP_023712.1| - 0.13 12.3 1.8 10 6.1 0.3 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-Di19 PF05605.12 gi|48478006|ref|YP_023712.1| - 0.15 12.4 3.3 1.3 9.4 3.3 2.0 1 1 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding PhnA_Zn_Ribbon PF08274.12 gi|48478006|ref|YP_023712.1| - 0.22 11.5 6.4 1.9 8.5 6.6 2.0 1 1 1 2 2 2 0 PhnA Zinc-Ribbon zf-ACC PF17848.1 gi|48478006|ref|YP_023712.1| - 0.28 11.3 9.2 2 8.6 1.0 2.4 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain zf-RING_7 PF02591.15 gi|48478006|ref|YP_023712.1| - 0.31 11.3 4.8 1.4 9.1 0.4 2.3 2 0 0 2 2 2 0 C4-type zinc ribbon domain ADK_lid PF05191.14 gi|48478006|ref|YP_023712.1| - 0.39 10.7 3.9 0.55 10.3 0.1 2.2 2 0 0 2 2 2 0 Adenylate kinase, active site lid zf-RRN7 PF11781.8 gi|48478006|ref|YP_023712.1| - 0.46 10.2 4.6 4 7.2 0.4 2.1 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 PriA_CRR PF18319.1 gi|48478006|ref|YP_023712.1| - 0.57 10.2 4.8 1.2 9.2 0.4 2.2 2 0 0 2 2 2 0 PriA DNA helicase Cys-rich region (CRR) domain zf-H2C2_2 PF13465.6 gi|48478006|ref|YP_023712.1| - 0.64 10.6 3.6 0.93 10.0 0.2 2.2 2 0 0 2 2 2 0 Zinc-finger double domain zinc_ribbon_10 PF10058.9 gi|48478006|ref|YP_023712.1| - 0.8 9.5 5.8 13 5.6 5.8 2.2 1 1 0 1 1 1 0 Predicted integral membrane zinc-ribbon metal-binding protein Aconitase PF00330.20 gi|48478007|ref|YP_023713.1| - 1.8e-152 508.6 0.0 2.4e-152 508.2 0.0 1.1 1 0 0 1 1 1 1 Aconitase family (aconitate hydratase) Aconitase_C PF00694.19 gi|48478007|ref|YP_023713.1| - 7.2e-34 116.9 0.0 1.7e-33 115.7 0.0 1.6 1 0 0 1 1 1 1 Aconitase C-terminal domain Radical_SAM PF04055.21 gi|48478008|ref|YP_023714.1| - 2.9e-14 53.8 0.0 3e-13 50.5 0.0 2.3 2 1 0 2 2 2 1 Radical SAM superfamily SLAC1 PF03595.17 gi|48478009|ref|YP_023715.1| - 1.5e-23 83.6 38.6 1.7e-23 83.4 38.6 1.0 1 0 0 1 1 1 1 Voltage-dependent anion channel MerC PF03203.14 gi|48478009|ref|YP_023715.1| - 4.1 7.9 8.0 1.7 9.1 3.2 2.6 1 1 0 2 2 2 0 MerC mercury resistance protein Oxidored_molyb PF00174.19 gi|48478010|ref|YP_023716.1| - 2.5e-36 124.9 0.0 3.4e-36 124.5 0.0 1.1 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain rve_2 PF13333.6 gi|48478010|ref|YP_023716.1| - 0.031 14.5 0.3 0.083 13.1 0.3 1.7 1 0 0 1 1 1 0 Integrase core domain Cupin_2 PF07883.11 gi|48478011|ref|YP_023717.1| - 2e-13 49.9 0.0 2.7e-13 49.4 0.0 1.2 1 0 0 1 1 1 1 Cupin domain MannoseP_isomer PF01050.18 gi|48478011|ref|YP_023717.1| - 2e-11 44.0 0.1 2.3e-11 43.8 0.1 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase Ectoine_synth PF06339.12 gi|48478011|ref|YP_023717.1| - 6.7e-07 29.5 0.2 7.6e-07 29.4 0.2 1.1 1 0 0 1 1 1 1 Ectoine synthase Cupin_7 PF12973.7 gi|48478011|ref|YP_023717.1| - 5.4e-05 23.0 0.0 7.5e-05 22.6 0.0 1.1 1 0 0 1 1 1 1 ChrR Cupin-like domain Cupin_1 PF00190.22 gi|48478011|ref|YP_023717.1| - 0.0009 18.9 0.0 0.0012 18.5 0.0 1.2 1 0 0 1 1 1 1 Cupin Asp_Arg_Hydrox PF05118.15 gi|48478011|ref|YP_023717.1| - 0.0053 16.6 0.0 0.0066 16.3 0.0 1.2 1 0 0 1 1 1 1 Aspartyl/Asparaginyl beta-hydroxylase AraC_binding PF02311.19 gi|48478011|ref|YP_023717.1| - 0.054 13.4 0.0 0.071 13.0 0.0 1.2 1 0 0 1 1 1 0 AraC-like ligand binding domain Cupin_3 PF05899.12 gi|48478011|ref|YP_023717.1| - 0.081 12.6 0.0 0.15 11.8 0.0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF861) sCache_2 PF17200.4 gi|48478011|ref|YP_023717.1| - 0.12 12.2 0.0 0.14 12.0 0.0 1.2 1 0 0 1 1 1 0 Single Cache domain 2 Yip1 PF04893.17 gi|48478012|ref|YP_023718.1| - 0.0031 17.3 26.0 0.0039 16.9 26.0 1.1 1 0 0 1 1 1 1 Yip1 domain ABC_export PF16962.5 gi|48478012|ref|YP_023718.1| - 0.032 12.7 9.9 0.039 12.4 9.9 1.1 1 0 0 1 1 1 0 Putative ABC exporter DUF1282 PF06930.12 gi|48478012|ref|YP_023718.1| - 0.21 11.4 12.6 0.67 9.7 12.7 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF1282) Aldo_ket_red PF00248.21 gi|48478013|ref|YP_023719.1| - 6.9e-58 196.2 0.1 8e-58 196.0 0.1 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family DUF2759 PF10958.8 gi|48478013|ref|YP_023719.1| - 0.11 12.3 0.9 0.23 11.2 0.9 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2759) PNP_UDP_1 PF01048.20 gi|48478014|ref|YP_023720.1| - 1.2e-48 165.4 0.0 1.3e-48 165.3 0.0 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily CutA1 PF03091.15 gi|48478014|ref|YP_023720.1| - 0.026 14.4 0.1 0.042 13.7 0.1 1.3 1 0 0 1 1 1 0 CutA1 divalent ion tolerance protein Beta-Casp PF10996.8 gi|48478015|ref|YP_023721.1| - 1.8e-15 57.2 0.0 5.6e-15 55.6 0.0 1.8 2 1 0 2 2 2 1 Beta-Casp domain RMMBL PF07521.12 gi|48478015|ref|YP_023721.1| - 3.7e-11 42.8 0.0 1.2e-10 41.1 0.0 1.9 1 0 0 1 1 1 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B PF00753.27 gi|48478015|ref|YP_023721.1| - 2.7e-09 37.3 0.2 5.2e-09 36.4 0.2 1.7 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_6 PF16661.5 gi|48478015|ref|YP_023721.1| - 8.4e-09 35.1 0.0 2e-08 33.9 0.0 1.6 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|48478015|ref|YP_023721.1| - 0.00015 21.4 0.0 0.001 18.6 0.0 2.1 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|48478015|ref|YP_023721.1| - 0.0068 16.3 0.1 0.033 14.1 0.1 2.2 1 1 1 2 2 2 1 Beta-lactamase superfamily domain Sua5_yciO_yrdC PF01300.18 gi|48478016|ref|YP_023722.1| - 2.1e-51 174.0 0.0 3.2e-51 173.4 0.0 1.3 1 0 0 1 1 1 1 Telomere recombination SUA5 PF03481.13 gi|48478016|ref|YP_023722.1| - 2.5e-21 76.7 0.0 4.2e-21 75.9 0.0 1.3 1 0 0 1 1 1 1 Putative GTP-binding controlling metal-binding Acetyltransf_1 PF00583.25 gi|48478017|ref|YP_023723.1| - 4.9e-12 46.1 0.0 8.3e-12 45.4 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|48478017|ref|YP_023723.1| - 6.8e-10 39.2 0.0 1.6e-09 38.1 0.0 1.6 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|48478017|ref|YP_023723.1| - 1.1e-09 38.3 0.0 2.2e-09 37.3 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|48478017|ref|YP_023723.1| - 3.4e-07 30.1 0.0 6.9e-07 29.2 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_4 PF13420.7 gi|48478017|ref|YP_023723.1| - 2.7e-05 24.4 0.2 8.5e-05 22.7 0.1 1.9 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_15 PF17013.5 gi|48478017|ref|YP_023723.1| - 0.014 14.8 1.0 0.022 14.2 0.8 1.5 1 1 0 1 1 1 0 Putative acetyl-transferase Acetyltransf_3 PF13302.7 gi|48478017|ref|YP_023723.1| - 0.018 15.7 0.0 0.035 14.8 0.0 1.5 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain AA_permease PF00324.21 gi|48478018|ref|YP_023724.1| - 1.9e-54 185.1 55.2 2.1e-54 184.9 55.2 1.0 1 0 0 1 1 1 1 Amino acid permease AA_permease_2 PF13520.6 gi|48478018|ref|YP_023724.1| - 1.4e-21 76.8 62.8 1.5e-20 73.5 62.7 1.9 1 1 0 1 1 1 1 Amino acid permease Ferrochelatase PF00762.19 gi|48478020|ref|YP_023726.1| - 3.6e-46 157.7 0.0 4.5e-46 157.4 0.0 1.0 1 0 0 1 1 1 1 Ferrochelatase OTOS PF15182.6 gi|48478020|ref|YP_023726.1| - 0.047 13.6 0.0 0.11 12.5 0.0 1.6 1 0 0 1 1 1 0 Otospiralin GTP_EFTU_D2 PF03144.25 gi|48478021|ref|YP_023727.1| - 2.3e-09 37.5 0.0 5.1e-09 36.4 0.0 1.6 1 0 0 1 1 1 1 Elongation factor Tu domain 2 GARS_A PF01071.19 gi|48478022|ref|YP_023728.1| - 2.9e-53 180.6 0.2 3.8e-53 180.1 0.2 1.2 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain GARS_N PF02844.15 gi|48478022|ref|YP_023728.1| - 1.1e-16 61.4 0.0 1.9e-16 60.6 0.0 1.5 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, N domain GARS_C PF02843.16 gi|48478022|ref|YP_023728.1| - 8.9e-11 41.9 0.0 2.3e-09 37.4 0.0 2.3 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, C domain ATP-grasp_3 PF02655.14 gi|48478022|ref|YP_023728.1| - 0.0088 16.1 0.0 0.03 14.4 0.0 1.8 1 1 0 1 1 1 1 ATP-grasp domain SMC_ScpB PF04079.16 gi|48478023|ref|YP_023729.1| - 3.4e-28 98.3 0.1 3.8e-28 98.1 0.1 1.0 1 0 0 1 1 1 1 Segregation and condensation complex subunit ScpB HTH_11 PF08279.12 gi|48478023|ref|YP_023729.1| - 0.02 14.8 0.2 0.054 13.4 0.1 1.9 2 0 0 2 2 2 0 HTH domain IF2_N PF04760.15 gi|48478023|ref|YP_023729.1| - 0.029 14.2 0.1 0.059 13.2 0.1 1.7 1 0 0 1 1 1 0 Translation initiation factor IF-2, N-terminal region GntR PF00392.21 gi|48478023|ref|YP_023729.1| - 0.029 14.0 0.0 2.8 7.6 0.0 2.3 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family HTH_5 PF01022.20 gi|48478023|ref|YP_023729.1| - 0.057 13.3 0.0 0.11 12.4 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|48478023|ref|YP_023729.1| - 0.12 12.3 0.0 6 6.8 0.0 2.7 2 1 0 2 2 2 0 MarR family HTH_17 PF12728.7 gi|48478023|ref|YP_023729.1| - 0.14 12.4 0.0 0.35 11.1 0.0 1.7 1 1 0 1 1 1 0 Helix-turn-helix domain PALP PF00291.25 gi|48478025|ref|YP_023731.1| - 1.5e-46 159.2 0.0 3.1e-46 158.1 0.0 1.4 1 1 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Sugar-bind PF04198.13 gi|48478025|ref|YP_023731.1| - 0.092 11.9 0.0 2.7 7.0 0.0 2.2 2 0 0 2 2 2 0 Putative sugar-binding domain ECH_1 PF00378.20 gi|48478026|ref|YP_023732.1| - 2.4e-43 148.3 0.0 3.4e-43 147.8 0.0 1.2 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 gi|48478026|ref|YP_023732.1| - 3.9e-18 66.0 0.1 9.4e-18 64.8 0.1 1.4 1 1 1 2 2 2 1 Enoyl-CoA hydratase/isomerase AMMECR1 PF01871.17 gi|48478027|ref|YP_023733.1| - 1.6e-45 154.7 0.0 1.8e-45 154.6 0.0 1.0 1 0 0 1 1 1 1 AMMECR1 Acetyltransf_1 PF00583.25 gi|48478028|ref|YP_023734.1| - 7.5e-15 55.2 0.0 8.9e-15 55.0 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_4 PF13420.7 gi|48478028|ref|YP_023734.1| - 1.7e-12 47.7 2.0 1.8e-12 47.6 2.0 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|48478028|ref|YP_023734.1| - 8.1e-11 42.0 0.0 1.1e-10 41.6 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|48478028|ref|YP_023734.1| - 4.3e-10 39.9 0.0 6.4e-10 39.3 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|48478028|ref|YP_023734.1| - 1.8e-06 28.0 0.0 1.3e-05 25.2 0.0 2.0 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|48478028|ref|YP_023734.1| - 4e-05 23.5 0.0 0.00013 21.8 0.0 1.7 1 1 1 2 2 2 1 FR47-like protein Acetyltransf_3 PF13302.7 gi|48478028|ref|YP_023734.1| - 0.0038 17.9 0.0 0.0045 17.7 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Y_phosphatase2 PF03162.13 gi|48478028|ref|YP_023734.1| - 0.0047 16.5 0.1 0.0056 16.3 0.1 1.2 1 0 0 1 1 1 1 Tyrosine phosphatase family Gly_acyl_tr_C PF08444.10 gi|48478028|ref|YP_023734.1| - 0.024 14.9 0.2 0.045 14.0 0.2 1.4 1 0 0 1 1 1 0 Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region LicD PF04991.13 gi|48478028|ref|YP_023734.1| - 0.024 14.8 1.7 0.029 14.5 1.7 1.1 1 0 0 1 1 1 0 LicD family GNAT_acetyltran PF12746.7 gi|48478028|ref|YP_023734.1| - 0.04 13.5 0.0 0.72 9.4 0.0 2.0 2 0 0 2 2 2 0 GNAT acetyltransferase CBS PF00571.28 gi|48478028|ref|YP_023734.1| - 0.049 14.1 1.7 1.6 9.2 1.7 2.6 1 1 0 1 1 1 0 CBS domain DUF3107 PF11305.8 gi|48478028|ref|YP_023734.1| - 0.11 12.7 0.0 0.19 12.0 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3107) Malic_M PF03949.15 gi|48478029|ref|YP_023735.1| - 1.7e-22 79.9 0.2 7.3e-22 77.9 0.2 1.8 1 1 0 1 1 1 1 Malic enzyme, NAD binding domain malic PF00390.19 gi|48478029|ref|YP_023735.1| - 1e-21 77.6 0.1 5.1e-18 65.5 0.1 3.1 1 1 0 1 1 1 1 Malic enzyme, N-terminal domain Shikimate_DH PF01488.20 gi|48478029|ref|YP_023735.1| - 0.031 14.3 0.1 0.12 12.4 0.0 1.9 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase Memo PF01875.17 gi|48478030|ref|YP_023736.1| - 1.1e-64 218.2 0.0 1.2e-64 218.1 0.0 1.0 1 0 0 1 1 1 1 Memo-like protein PXB PF12828.7 gi|48478030|ref|YP_023736.1| - 0.0076 16.2 0.0 0.013 15.5 0.0 1.2 1 0 0 1 1 1 1 PX-associated Radical_SAM PF04055.21 gi|48478031|ref|YP_023737.1| - 1.8e-17 64.2 0.3 8.7e-16 58.7 0.1 2.2 1 1 1 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|48478031|ref|YP_023737.1| - 3.3e-05 24.2 0.0 7.6e-05 23.0 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|48478031|ref|YP_023737.1| - 0.055 13.6 2.1 0.069 13.3 0.0 2.1 2 0 0 2 2 2 0 4Fe-4S single cluster domain zf-ribbon_3 PF13248.6 gi|48478031|ref|YP_023737.1| - 0.23 10.9 0.1 0.23 10.9 0.1 3.2 3 0 0 3 3 3 0 zinc-ribbon domain NOB1_Zn_bind PF08772.11 gi|48478031|ref|YP_023737.1| - 0.3 11.3 3.6 25 5.1 0.4 3.3 3 0 0 3 3 3 0 Nin one binding (NOB1) Zn-ribbon like RNA_POL_M_15KD PF02150.16 gi|48478031|ref|YP_023737.1| - 0.59 10.1 15.4 6 6.8 7.7 3.6 2 1 0 2 2 2 0 RNA polymerases M/15 Kd subunit CN_hydrolase PF00795.22 gi|48478032|ref|YP_023738.1| - 2.2e-44 151.8 0.0 2.4e-44 151.6 0.0 1.0 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase VitK2_biosynth PF02621.14 gi|48478033|ref|YP_023739.1| - 4.4e-60 203.5 0.1 5e-60 203.3 0.1 1.0 1 0 0 1 1 1 1 Menaquinone biosynthesis Oxidored_FMN PF00724.20 gi|48478034|ref|YP_023740.1| - 1.8e-07 30.8 10.9 0.054 12.7 0.4 3.1 1 1 2 3 3 3 3 NADH:flavin oxidoreductase / NADH oxidase family TBP-binding PF09247.11 gi|48478034|ref|YP_023740.1| - 6.2e-06 26.4 0.5 0.88 9.9 0.0 3.3 3 0 0 3 3 3 2 TATA box-binding protein binding DUF892 PF05974.12 gi|48478034|ref|YP_023740.1| - 7.2e-06 26.1 11.5 0.17 11.9 2.4 3.3 1 1 2 3 3 3 3 Domain of unknown function (DUF892) DUF2024 PF09630.10 gi|48478034|ref|YP_023740.1| - 0.00034 20.4 8.6 1 9.3 0.2 3.2 1 1 2 3 3 3 3 Domain of unknown function (DUF2024) CheY-binding PF09078.11 gi|48478034|ref|YP_023740.1| - 0.00053 20.1 0.2 17 5.6 0.0 3.7 3 0 0 3 3 3 0 CheY binding Fz PF01392.22 gi|48478034|ref|YP_023740.1| - 0.00055 20.5 4.2 6 7.5 0.1 3.1 1 1 2 3 3 3 2 Fz domain Big_11 PF18200.1 gi|48478034|ref|YP_023740.1| - 0.00086 19.2 1.0 5.2 7.0 0.0 3.2 3 0 0 3 3 3 2 Bacterial Ig-like domain Rubrerythrin PF02915.17 gi|48478034|ref|YP_023740.1| - 0.0021 18.4 19.8 1.2 9.6 6.7 4.0 1 1 3 4 4 4 3 Rubrerythrin TBCC_N PF16752.5 gi|48478034|ref|YP_023740.1| - 0.004 17.6 6.4 1.2 9.6 0.8 3.2 1 1 2 3 3 3 2 Tubulin-specific chaperone C N-terminal domain NLE PF08154.12 gi|48478034|ref|YP_023740.1| - 0.0063 17.0 0.0 38 4.9 0.0 3.3 3 0 0 3 3 3 0 NLE (NUC135) domain DUF600 PF04634.12 gi|48478034|ref|YP_023740.1| - 0.0068 16.5 3.2 15 5.6 0.1 3.1 1 1 2 3 3 3 0 Protein of unknown function, DUF600 Get5_C PF18514.1 gi|48478034|ref|YP_023740.1| - 0.01 15.6 2.6 9.6 6.0 0.0 3.9 4 0 0 4 4 4 0 Get5 C-terminal domain ApoLp-III PF07464.11 gi|48478034|ref|YP_023740.1| - 0.016 15.3 9.8 0.21 11.7 0.6 2.8 1 1 2 3 3 3 0 Apolipophorin-III precursor (apoLp-III) Mur_ligase_M PF08245.12 gi|48478034|ref|YP_023740.1| - 0.016 15.2 10.3 1.3 8.9 0.5 3.1 1 1 2 3 3 3 0 Mur ligase middle domain PSII_Pbs27 PF13326.6 gi|48478034|ref|YP_023740.1| - 0.026 14.9 0.3 59 4.0 0.0 3.2 3 0 0 3 3 3 0 Photosystem II Pbs27 DUF1678 PF07913.11 gi|48478034|ref|YP_023740.1| - 0.026 14.3 0.0 39 3.9 0.0 3.0 1 1 2 3 3 3 0 Protein of unknown function (DUF1678) Lip_prot_lig_C PF10437.9 gi|48478034|ref|YP_023740.1| - 0.028 14.4 4.8 5.7 7.0 0.2 3.2 3 0 0 3 3 3 0 Bacterial lipoate protein ligase C-terminus FAM167 PF11652.8 gi|48478034|ref|YP_023740.1| - 0.079 13.4 4.6 7.9 7.0 0.2 3.1 1 1 2 3 3 3 0 FAM167 XS PF03468.14 gi|48478034|ref|YP_023740.1| - 0.11 12.7 5.8 22 5.4 0.2 3.2 1 1 2 3 3 3 0 XS domain Scaffolding_pro PF11418.8 gi|48478034|ref|YP_023740.1| - 0.18 12.4 4.2 17 6.0 0.1 2.8 1 1 1 2 2 2 0 Phi29 scaffolding protein DUF3932 PF13068.6 gi|48478034|ref|YP_023740.1| - 0.19 12.0 0.2 21 5.5 0.0 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF3932) Caskin-tail PF16632.5 gi|48478034|ref|YP_023740.1| - 0.25 11.8 7.8 26 5.3 0.2 3.3 3 0 0 3 3 3 0 C-terminal region of Caskin Imm3 PF14425.6 gi|48478034|ref|YP_023740.1| - 0.25 11.4 4.7 11 6.1 0.2 3.0 2 2 0 2 2 2 0 Immunity protein Imm3 A_thal_3526 PF09713.10 gi|48478034|ref|YP_023740.1| - 0.73 10.1 7.3 37 4.7 0.1 3.7 3 0 0 3 3 3 0 Plant protein 1589 of unknown function (A_thal_3526) zf-C2H2_3rep PF18868.1 gi|48478034|ref|YP_023740.1| - 1.3 9.7 4.9 75 4.0 0.1 3.0 1 1 2 3 3 3 0 Zinc finger C2H2-type, 3 repeats Blo-t-5 PF11642.8 gi|48478034|ref|YP_023740.1| - 2.2 8.3 9.3 20 5.2 0.5 3.4 2 1 2 4 4 4 0 Mite allergen Blo t 5 NUDIX PF00293.28 gi|48478035|ref|YP_023741.1| - 1.9e-16 60.3 0.0 1.9e-16 60.3 0.0 1.1 1 0 0 1 1 1 1 NUDIX domain NUDIX_4 PF14815.6 gi|48478035|ref|YP_023741.1| - 0.00068 19.6 0.0 0.00074 19.5 0.0 1.1 1 0 0 1 1 1 1 NUDIX domain PEPcase_2 PF14010.6 gi|48478036|ref|YP_023742.1| - 1.6e-202 673.5 8.0 1.8e-202 673.3 8.0 1.0 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxylase Inhibitor_G39P PF11417.8 gi|48478036|ref|YP_023742.1| - 0.017 15.6 1.1 0.064 13.8 0.5 2.3 2 0 0 2 2 2 0 Loader and inhibitor of phage G40P DUF2312 PF10073.9 gi|48478036|ref|YP_023742.1| - 0.047 13.3 0.1 0.18 11.5 0.1 2.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2312) OTCace_N PF02729.21 gi|48478037|ref|YP_023743.1| - 1.8e-48 164.3 0.1 2.8e-48 163.7 0.1 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.24 gi|48478037|ref|YP_023743.1| - 3.7e-27 95.3 0.0 5.4e-27 94.8 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain PyrI PF01948.18 gi|48478038|ref|YP_023744.1| - 5.2e-30 103.6 4.5 8e-30 103.0 4.5 1.3 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, allosteric domain PyrI_C PF02748.15 gi|48478038|ref|YP_023744.1| - 1.3e-18 66.6 2.6 2.6e-18 65.6 2.6 1.5 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, metal binding domain Diphthami_syn_2 PF01902.17 gi|48478039|ref|YP_023745.1| - 2.3e-46 158.1 0.4 2.6e-46 157.9 0.4 1.0 1 0 0 1 1 1 1 Diphthamide synthase ThiI PF02568.14 gi|48478039|ref|YP_023745.1| - 0.011 15.3 0.1 0.015 14.9 0.1 1.6 1 1 0 1 1 1 0 Thiamine biosynthesis protein (ThiI) QueC PF06508.13 gi|48478039|ref|YP_023745.1| - 0.014 14.9 0.0 0.023 14.2 0.0 1.4 1 1 0 1 1 1 0 Queuosine biosynthesis protein QueC Glyco_tranf_2_3 PF13641.6 gi|48478040|ref|YP_023746.1| - 3.3e-17 63.1 0.0 5.6e-17 62.4 0.0 1.3 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glycos_transf_2 PF00535.26 gi|48478040|ref|YP_023746.1| - 4.7e-16 59.1 0.0 8.8e-16 58.2 0.0 1.5 2 0 0 2 2 2 1 Glycosyl transferase family 2 Glyco_transf_21 PF13506.6 gi|48478040|ref|YP_023746.1| - 2.5e-09 36.8 0.0 2e-08 33.9 0.0 2.0 1 1 0 1 1 1 1 Glycosyl transferase family 21 Glyco_trans_2_3 PF13632.6 gi|48478040|ref|YP_023746.1| - 3.5e-08 33.6 1.7 3.5e-08 33.6 1.7 1.8 2 0 0 2 2 2 1 Glycosyl transferase family group 2 Osmo_MPGsynth PF09488.10 gi|48478040|ref|YP_023746.1| - 0.00029 19.7 0.3 0.013 14.2 0.1 2.1 1 1 1 2 2 2 2 Mannosyl-3-phosphoglycerate synthase (osmo_MPGsynth) Baculo_p48 PF04878.13 gi|48478040|ref|YP_023746.1| - 0.053 12.4 0.1 0.2 10.6 0.0 1.7 1 1 1 2 2 2 0 Baculovirus P48 protein CTP-dep_RFKase PF01982.16 gi|48478041|ref|YP_023747.1| - 6.2e-39 132.8 0.3 1.3e-38 131.8 0.1 1.5 2 0 0 2 2 2 1 Domain of unknown function DUF120 HTH_Crp_2 PF13545.6 gi|48478041|ref|YP_023747.1| - 4.9e-06 26.4 0.2 1.1e-05 25.3 0.2 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain Fe_dep_repress PF01325.19 gi|48478041|ref|YP_023747.1| - 0.00011 22.4 0.7 0.00018 21.7 0.1 1.7 2 0 0 2 2 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_36 PF13730.6 gi|48478041|ref|YP_023747.1| - 0.00012 21.9 0.1 0.00026 20.9 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.22 gi|48478041|ref|YP_023747.1| - 0.00023 21.0 0.2 0.00083 19.2 0.2 1.9 3 0 0 3 3 3 1 MarR family Rrf2 PF02082.20 gi|48478041|ref|YP_023747.1| - 0.00026 21.3 0.1 0.00063 20.1 0.1 1.5 1 0 0 1 1 1 1 Transcriptional regulator MarR_2 PF12802.7 gi|48478041|ref|YP_023747.1| - 0.0004 20.2 0.0 0.00072 19.4 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.12 gi|48478041|ref|YP_023747.1| - 0.00048 20.0 0.8 0.0018 18.1 0.3 2.3 2 0 0 2 2 2 1 HTH domain NUMOD1 PF07453.13 gi|48478041|ref|YP_023747.1| - 0.0066 16.7 0.2 0.024 14.9 0.1 2.1 2 0 0 2 2 2 1 NUMOD1 domain HTH_27 PF13463.6 gi|48478041|ref|YP_023747.1| - 0.013 16.0 0.2 0.097 13.2 0.0 2.2 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_DeoR PF08220.12 gi|48478041|ref|YP_023747.1| - 0.02 14.7 0.1 0.053 13.3 0.1 1.7 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_6 PF01418.17 gi|48478041|ref|YP_023747.1| - 0.021 14.8 0.6 0.43 10.6 0.0 2.7 1 1 2 3 3 3 0 Helix-turn-helix domain, rpiR family HTH_24 PF13412.6 gi|48478041|ref|YP_023747.1| - 0.022 14.3 1.6 0.029 13.9 0.1 2.0 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|48478041|ref|YP_023747.1| - 0.03 14.2 0.1 0.095 12.6 0.1 1.9 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Put_DNA-bind_N PF06971.13 gi|48478041|ref|YP_023747.1| - 0.032 14.2 0.1 0.11 12.5 0.1 1.9 1 0 0 1 1 1 0 Putative DNA-binding protein N-terminus Sigma54_CBD PF04963.13 gi|48478041|ref|YP_023747.1| - 0.062 13.2 0.1 0.13 12.2 0.1 1.5 1 0 0 1 1 1 0 Sigma-54 factor, core binding domain HTH_3 PF01381.22 gi|48478041|ref|YP_023747.1| - 0.32 11.1 0.1 0.32 11.1 0.1 2.5 3 0 0 3 3 3 0 Helix-turn-helix PIN_9 PF18477.1 gi|48478042|ref|YP_023748.1| - 3.3e-17 62.9 0.0 3.9e-17 62.6 0.0 1.1 1 0 0 1 1 1 1 PIN like domain PIN_4 PF13638.6 gi|48478042|ref|YP_023748.1| - 0.00039 20.7 0.0 0.0046 17.2 0.0 2.0 1 1 1 2 2 2 1 PIN domain Fcf1 PF04900.12 gi|48478042|ref|YP_023748.1| - 0.00077 19.8 0.0 0.0011 19.3 0.0 1.2 1 0 0 1 1 1 1 Fcf1 PIN PF01850.21 gi|48478042|ref|YP_023748.1| - 0.0066 16.9 0.1 0.011 16.2 0.1 1.4 1 1 0 1 1 1 1 PIN domain PIN_5 PF08745.11 gi|48478042|ref|YP_023748.1| - 0.063 12.7 0.0 2.1 7.7 0.0 2.1 1 1 1 2 2 2 0 PINc domain ribonuclease PIN_2 PF10130.9 gi|48478042|ref|YP_023748.1| - 0.068 13.4 0.0 2.8 8.2 0.0 2.1 2 0 0 2 2 2 0 PIN domain RNase_Zc3h12a PF11977.8 gi|48478042|ref|YP_023748.1| - 0.098 12.4 0.0 0.15 11.8 0.0 1.3 1 0 0 1 1 1 0 Zc3h12a-like Ribonuclease NYN domain DUF5615 PF18480.1 gi|48478042|ref|YP_023748.1| - 0.15 11.8 0.0 0.24 11.2 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF5615) eIF-5_eIF-2B PF01873.17 gi|48478043|ref|YP_023749.1| - 3.9e-35 120.3 0.4 6.1e-35 119.6 0.4 1.2 1 0 0 1 1 1 1 Domain found in IF2B/IF5 TRAM PF01938.20 gi|48478043|ref|YP_023749.1| - 3.5e-12 46.1 0.4 8.2e-12 44.9 0.4 1.6 1 0 0 1 1 1 1 TRAM domain Elf1 PF05129.13 gi|48478043|ref|YP_023749.1| - 0.05 13.7 0.5 0.1 12.7 0.5 1.4 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like TF_Zn_Ribbon PF08271.12 gi|48478043|ref|YP_023749.1| - 0.092 12.3 0.2 0.2 11.2 0.2 1.6 1 0 0 1 1 1 0 TFIIB zinc-binding RHH_8 PF17723.1 gi|48478044|ref|YP_023750.1| - 0.015 15.5 0.0 0.06 13.5 0.0 1.9 1 1 1 2 2 2 0 Ribbon-Helix-Helix transcriptional regulator family HicB_lk_antitox PF15919.5 gi|48478044|ref|YP_023750.1| - 0.038 14.1 0.1 0.18 11.9 0.0 1.9 2 0 0 2 2 2 0 HicB_like antitoxin of bacterial toxin-antitoxin system Glyco_transf_8 PF01501.20 gi|48478044|ref|YP_023750.1| - 0.069 12.7 0.2 0.073 12.6 0.2 1.1 1 0 0 1 1 1 0 Glycosyl transferase family 8 DUF4918 PF16265.5 gi|48478045|ref|YP_023751.1| - 0.076 12.5 1.9 0.11 12.0 1.6 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4918) PucR PF07905.11 gi|48478045|ref|YP_023751.1| - 0.078 13.3 0.1 0.1 12.9 0.1 1.3 1 0 0 1 1 1 0 Purine catabolism regulatory protein-like family MFS_1 PF07690.16 gi|48478046|ref|YP_023752.1| - 5.9e-24 84.6 47.9 5.9e-24 84.6 47.9 1.4 1 1 0 1 1 1 1 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|48478046|ref|YP_023752.1| - 1.2e-17 64.0 47.0 1.4e-16 60.5 16.0 2.1 1 1 1 2 2 2 2 Sugar (and other) transporter MazG-like PF12643.7 gi|48478047|ref|YP_023753.1| - 2.3e-09 37.4 0.5 3.1e-09 37.0 0.5 1.2 1 0 0 1 1 1 1 MazG-like family MazG PF03819.17 gi|48478047|ref|YP_023753.1| - 0.024 14.8 0.2 0.034 14.3 0.2 1.4 1 0 0 1 1 1 0 MazG nucleotide pyrophosphohydrolase domain ABC_membrane PF00664.23 gi|48478048|ref|YP_023754.1| - 2.1e-42 145.7 19.8 2.7e-42 145.3 19.8 1.2 1 0 0 1 1 1 1 ABC transporter transmembrane region ABC_tran PF00005.27 gi|48478048|ref|YP_023754.1| - 1.2e-34 119.8 0.0 2.1e-34 119.0 0.0 1.4 1 0 0 1 1 1 1 ABC transporter RsgA_GTPase PF03193.16 gi|48478048|ref|YP_023754.1| - 3.2e-06 27.2 0.0 7.3e-06 26.0 0.0 1.6 1 0 0 1 1 1 1 RsgA GTPase MMR_HSR1 PF01926.23 gi|48478048|ref|YP_023754.1| - 0.00041 20.4 0.2 0.0011 19.0 0.2 1.9 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_29 PF13555.6 gi|48478048|ref|YP_023754.1| - 0.00044 19.9 0.0 0.0066 16.2 0.0 2.4 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|48478048|ref|YP_023754.1| - 0.001 19.4 0.1 0.0083 16.4 0.1 2.2 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|48478048|ref|YP_023754.1| - 0.0011 18.5 3.7 0.047 13.1 3.7 2.3 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain DUF87 PF01935.17 gi|48478048|ref|YP_023754.1| - 0.0022 18.1 0.0 0.0067 16.5 0.0 1.8 1 0 0 1 1 1 1 Helicase HerA, central domain ABC_membrane_3 PF13748.6 gi|48478048|ref|YP_023754.1| - 0.04 13.2 18.8 0.0088 15.3 11.8 2.6 2 1 0 2 2 2 0 ABC transporter transmembrane region AAA_10 PF12846.7 gi|48478048|ref|YP_023754.1| - 0.047 12.6 0.2 0.17 10.7 0.0 1.8 2 0 0 2 2 2 0 AAA-like domain Roc PF08477.13 gi|48478048|ref|YP_023754.1| - 0.066 13.4 0.1 2 8.6 0.0 2.5 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase AAA_24 PF13479.6 gi|48478048|ref|YP_023754.1| - 0.081 12.6 0.1 0.96 9.1 0.0 2.2 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.22 gi|48478048|ref|YP_023754.1| - 0.084 13.3 0.2 5.5 7.4 0.0 2.7 3 0 0 3 3 3 0 RNA helicase Dynamin_N PF00350.23 gi|48478048|ref|YP_023754.1| - 0.086 12.9 0.1 0.24 11.4 0.0 1.8 2 0 0 2 2 2 0 Dynamin family NTPase_1 PF03266.15 gi|48478048|ref|YP_023754.1| - 0.094 12.6 0.1 17 5.2 0.0 2.4 2 0 0 2 2 2 0 NTPase AAA_21 PF13304.6 gi|48478048|ref|YP_023754.1| - 0.099 12.4 11.2 0.02 14.7 3.0 3.0 3 1 1 4 4 4 0 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|48478048|ref|YP_023754.1| - 0.14 12.5 0.0 0.28 11.6 0.0 1.6 1 1 0 1 1 1 0 AAA ATPase domain AAA_23 PF13476.6 gi|48478048|ref|YP_023754.1| - 0.22 12.0 6.3 0.11 13.0 2.6 2.1 1 1 1 2 2 2 0 AAA domain ABC_tran PF00005.27 gi|48478049|ref|YP_023755.1| - 5.6e-28 98.2 0.0 1e-27 97.3 0.0 1.5 1 0 0 1 1 1 1 ABC transporter ABC_membrane PF00664.23 gi|48478049|ref|YP_023755.1| - 1.2e-25 90.7 16.3 1.6e-25 90.3 16.3 1.2 1 0 0 1 1 1 1 ABC transporter transmembrane region T2SSE PF00437.20 gi|48478049|ref|YP_023755.1| - 5e-05 22.5 0.0 9.2e-05 21.6 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein SMC_N PF02463.19 gi|48478049|ref|YP_023755.1| - 0.0025 17.3 0.0 0.0033 16.9 0.0 1.2 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain EMP70 PF02990.16 gi|48478049|ref|YP_023755.1| - 0.021 13.5 0.1 0.021 13.5 0.1 2.2 2 1 0 2 2 2 0 Endomembrane protein 70 FtsK_SpoIIIE PF01580.18 gi|48478049|ref|YP_023755.1| - 0.046 13.1 0.0 0.085 12.2 0.0 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family Phlebovirus_G1 PF07243.11 gi|48478049|ref|YP_023755.1| - 0.089 11.2 0.1 0.13 10.6 0.1 1.1 1 0 0 1 1 1 0 Phlebovirus glycoprotein G1 AAA_29 PF13555.6 gi|48478049|ref|YP_023755.1| - 0.1 12.3 0.1 0.24 11.2 0.1 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|48478049|ref|YP_023755.1| - 1.4 9.3 4.5 0.93 10.0 2.5 1.7 2 0 0 2 2 2 0 AAA domain GerPC PF10737.9 gi|48478050|ref|YP_023756.1| - 0.055 13.5 0.1 0.13 12.3 0.0 1.7 2 0 0 2 2 2 0 Spore germination protein GerPC DUF1542 PF07564.11 gi|48478050|ref|YP_023756.1| - 0.19 11.9 2.2 0.31 11.2 0.6 2.0 2 0 0 2 2 2 0 Domain of Unknown Function (DUF1542) Fe_dep_repr_C PF02742.15 gi|48478051|ref|YP_023757.1| - 3.2e-17 62.4 0.0 5.2e-17 61.7 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain Fe_dep_repress PF01325.19 gi|48478051|ref|YP_023757.1| - 1.4e-05 25.2 0.0 2.3e-05 24.5 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain MarR PF01047.22 gi|48478051|ref|YP_023757.1| - 9.3e-05 22.3 0.0 0.00015 21.6 0.0 1.3 1 0 0 1 1 1 1 MarR family LexA_DNA_bind PF01726.16 gi|48478051|ref|YP_023757.1| - 0.00032 20.4 0.0 0.00055 19.7 0.0 1.4 1 0 0 1 1 1 1 LexA DNA binding domain MarR_2 PF12802.7 gi|48478051|ref|YP_023757.1| - 0.00046 20.0 0.0 0.00072 19.4 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 gi|48478051|ref|YP_023757.1| - 0.0011 18.8 0.0 0.0022 17.9 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_24 PF13412.6 gi|48478051|ref|YP_023757.1| - 0.0018 17.8 0.1 0.0035 16.9 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|48478051|ref|YP_023757.1| - 0.0028 17.5 0.0 0.015 15.2 0.0 2.1 1 1 1 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|48478051|ref|YP_023757.1| - 0.0056 16.4 0.0 0.0098 15.7 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_45 PF14947.6 gi|48478051|ref|YP_023757.1| - 0.018 15.0 0.0 0.024 14.6 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_27 PF13463.6 gi|48478051|ref|YP_023757.1| - 0.028 14.9 0.0 0.048 14.2 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain Rrf2 PF02082.20 gi|48478051|ref|YP_023757.1| - 0.063 13.6 0.0 0.14 12.5 0.0 1.7 1 0 0 1 1 1 0 Transcriptional regulator GntR PF00392.21 gi|48478051|ref|YP_023757.1| - 0.13 11.9 0.0 0.24 11.1 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_36 PF13730.6 gi|48478051|ref|YP_023757.1| - 0.14 12.1 0.0 0.49 10.4 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain GAF_2 PF13185.6 gi|48478052|ref|YP_023758.1| - 7.2e-07 29.6 0.0 8.2e-07 29.4 0.0 1.1 1 0 0 1 1 1 1 GAF domain GAF_3 PF13492.6 gi|48478052|ref|YP_023758.1| - 1.9e-05 25.0 0.0 2.5e-05 24.6 0.0 1.1 1 0 0 1 1 1 1 GAF domain GAF PF01590.26 gi|48478052|ref|YP_023758.1| - 0.00078 20.1 0.0 0.00089 19.9 0.0 1.1 1 0 0 1 1 1 1 GAF domain Hormone_3 PF00159.18 gi|48478052|ref|YP_023758.1| - 0.17 12.0 0.7 21 5.3 0.1 2.3 2 0 0 2 2 2 0 Pancreatic hormone peptide Peptidase_M24 PF00557.24 gi|48478053|ref|YP_023759.1| - 1.5e-67 227.3 0.1 1.9e-67 227.0 0.1 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.18 gi|48478053|ref|YP_023759.1| - 8.6e-12 45.8 0.0 1.6e-11 45.0 0.0 1.4 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain Vitellogenin_N PF01347.22 gi|48478053|ref|YP_023759.1| - 0.0027 16.2 0.5 0.028 12.8 0.1 1.9 1 1 1 2 2 2 1 Lipoprotein amino terminal region RelE PF06296.12 gi|48478053|ref|YP_023759.1| - 0.015 15.4 0.3 0.87 9.7 0.0 2.9 3 0 0 3 3 3 0 RelE toxin of RelE / RelB toxin-antitoxin system NAF PF03822.14 gi|48478053|ref|YP_023759.1| - 0.11 12.7 0.1 0.38 11.0 0.1 1.9 1 0 0 1 1 1 0 NAF domain HSCB_C PF07743.13 gi|48478053|ref|YP_023759.1| - 0.43 11.1 3.6 20 5.8 0.0 2.5 2 0 0 2 2 2 0 HSCB C-terminal oligomerisation domain DNA_primase_lrg PF04104.14 gi|48478054|ref|YP_023760.1| - 2.5e-34 118.9 1.5 1.3e-33 116.6 1.5 1.9 1 1 0 1 1 1 1 Eukaryotic and archaeal DNA primase, large subunit SRP19 PF01922.17 gi|48478055|ref|YP_023761.1| - 1.1e-08 35.9 0.2 1.2e-08 35.7 0.2 1.1 1 0 0 1 1 1 1 SRP19 protein Ribosomal_S8e PF01201.22 gi|48478056|ref|YP_023762.1| - 3.5e-37 127.6 0.1 4.3e-37 127.3 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein S8e Polysacc_synt PF01943.17 gi|48478057|ref|YP_023763.1| - 1.6e-16 60.6 25.0 1.6e-16 60.6 25.0 2.9 1 1 2 3 3 3 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.6 gi|48478057|ref|YP_023763.1| - 0.00023 21.3 18.1 0.00023 21.3 18.1 4.3 2 1 1 3 3 3 1 Polysaccharide biosynthesis C-terminal domain NAD_synthase PF02540.17 gi|48478058|ref|YP_023764.1| - 1.4e-65 220.8 0.0 1.7e-65 220.5 0.0 1.0 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.16 gi|48478058|ref|YP_023764.1| - 0.076 11.8 0.0 4.9 5.9 0.0 2.1 2 0 0 2 2 2 0 tRNA methyl transferase Na_H_Exchanger PF00999.21 gi|48478059|ref|YP_023765.1| - 1.4e-35 122.9 48.3 1.6e-35 122.6 48.3 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family Abhydrolase_1 PF00561.20 gi|48478060|ref|YP_023766.1| - 1.4e-13 51.1 0.1 4.6e-11 42.9 0.0 2.0 1 1 1 2 2 2 2 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|48478060|ref|YP_023766.1| - 1.6e-11 45.2 0.0 1.8e-11 45.0 0.0 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 gi|48478060|ref|YP_023766.1| - 1.4e-09 37.5 0.0 3e-06 26.7 0.1 2.5 1 1 1 2 2 2 2 Serine aminopeptidase, S33 Abhydrolase_5 PF12695.7 gi|48478060|ref|YP_023766.1| - 6.5e-05 22.8 0.1 9.3e-05 22.2 0.1 1.3 1 1 0 1 1 1 1 Alpha/beta hydrolase family DUF1057 PF06342.12 gi|48478060|ref|YP_023766.1| - 0.0011 18.1 0.0 0.0033 16.5 0.0 1.7 1 1 1 2 2 2 1 Alpha/beta hydrolase of unknown function (DUF1057) Ndr PF03096.14 gi|48478060|ref|YP_023766.1| - 0.0089 14.8 0.0 0.01 14.5 0.0 1.1 1 0 0 1 1 1 1 Ndr family DUF5010 PF16402.5 gi|48478060|ref|YP_023766.1| - 0.075 11.9 0.0 0.35 9.6 0.1 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF5010) UDG PF03167.19 gi|48478061|ref|YP_023767.1| - 3.7e-28 98.5 0.0 4.3e-28 98.3 0.0 1.0 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily adh_short_C2 PF13561.6 gi|48478062|ref|YP_023768.1| - 4.8e-25 88.5 0.0 7.2e-25 87.9 0.0 1.2 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|48478062|ref|YP_023768.1| - 6.5e-21 74.7 0.0 8.8e-21 74.3 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase F420_oxidored PF03807.17 gi|48478062|ref|YP_023768.1| - 4.2e-05 24.0 0.0 0.00045 20.8 0.0 2.2 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 gi|48478062|ref|YP_023768.1| - 0.00013 22.2 0.1 0.00028 21.1 0.0 1.7 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 3HCDH_N PF02737.18 gi|48478062|ref|YP_023768.1| - 0.00014 21.8 0.0 0.00032 20.6 0.0 1.6 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|48478062|ref|YP_023768.1| - 0.00074 19.8 0.0 0.0016 18.7 0.0 1.6 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain NAD_binding_7 PF13241.6 gi|48478062|ref|YP_023768.1| - 0.001 19.5 0.0 0.003 18.0 0.0 2.0 1 1 0 1 1 1 1 Putative NAD(P)-binding Shikimate_DH PF01488.20 gi|48478062|ref|YP_023768.1| - 0.0055 16.8 0.1 0.018 15.1 0.0 1.8 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase KR PF08659.10 gi|48478062|ref|YP_023768.1| - 0.0055 16.6 0.0 0.0095 15.9 0.0 1.3 1 0 0 1 1 1 1 KR domain NmrA PF05368.13 gi|48478062|ref|YP_023768.1| - 0.0083 15.7 0.0 0.035 13.7 0.0 1.9 2 0 0 2 2 2 1 NmrA-like family NAD_binding_10 PF13460.6 gi|48478062|ref|YP_023768.1| - 0.015 15.2 0.0 0.12 12.2 0.0 2.3 1 1 0 1 1 1 0 NAD(P)H-binding UDPG_MGDP_dh_N PF03721.14 gi|48478062|ref|YP_023768.1| - 0.017 14.7 0.0 0.034 13.7 0.0 1.5 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Pyr_redox PF00070.27 gi|48478062|ref|YP_023768.1| - 0.022 15.3 0.0 0.064 13.8 0.0 1.9 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase ApbA PF02558.16 gi|48478062|ref|YP_023768.1| - 0.11 12.1 0.0 0.38 10.4 0.0 1.8 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA LktC PF06261.11 gi|48478063|ref|YP_023769.1| - 0.00057 19.8 0.5 0.00065 19.6 0.5 1.2 1 0 0 1 1 1 1 Actinobacillus actinomycetemcomitans leukotoxin activator LktC DUF1459 PF07312.11 gi|48478063|ref|YP_023769.1| - 1.1 9.5 6.5 0.079 13.2 1.7 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1459) Pox_A14 PF05767.12 gi|48478063|ref|YP_023769.1| - 3.8 7.7 9.8 2.5e+02 1.9 9.2 2.3 1 1 0 1 1 1 0 Poxvirus virion envelope protein A14 PLDc_2 PF13091.6 gi|48478064|ref|YP_023770.1| - 1.6e-34 118.6 2.4 4.1e-18 65.5 0.1 2.0 2 0 0 2 2 2 2 PLD-like domain PLDc PF00614.22 gi|48478064|ref|YP_023770.1| - 0.0033 17.5 0.3 4.1 7.7 0.1 3.2 2 2 0 2 2 2 2 Phospholipase D Active site motif Tyr-DNA_phospho PF06087.12 gi|48478064|ref|YP_023770.1| - 0.011 14.7 0.1 0.66 8.8 0.0 2.3 2 1 0 2 2 2 0 Tyrosyl-DNA phosphodiesterase RE_NgoFVII PF09565.10 gi|48478064|ref|YP_023770.1| - 0.012 14.9 0.3 0.28 10.5 0.1 2.1 2 0 0 2 2 2 0 NgoFVII restriction endonuclease TP_methylase PF00590.20 gi|48478065|ref|YP_023771.1| - 3e-39 135.1 0.0 3.9e-39 134.8 0.0 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Ldh_1_N PF00056.23 gi|48478066|ref|YP_023772.1| - 4.6e-37 127.2 0.1 7.1e-37 126.6 0.1 1.3 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain Ldh_1_C PF02866.18 gi|48478066|ref|YP_023772.1| - 4.2e-27 95.1 0.0 7.1e-27 94.4 0.0 1.3 1 0 0 1 1 1 1 lactate/malate dehydrogenase, alpha/beta C-terminal domain Glyco_hydro_4 PF02056.16 gi|48478066|ref|YP_023772.1| - 0.00049 19.7 0.1 0.0013 18.4 0.0 1.7 2 0 0 2 2 2 1 Family 4 glycosyl hydrolase ThiF PF00899.21 gi|48478066|ref|YP_023772.1| - 0.037 13.4 0.1 0.059 12.7 0.1 1.3 1 0 0 1 1 1 0 ThiF family NAD_binding_8 PF13450.6 gi|48478066|ref|YP_023772.1| - 0.078 13.2 0.2 0.16 12.2 0.2 1.6 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain UDPG_MGDP_dh_N PF03721.14 gi|48478066|ref|YP_023772.1| - 0.098 12.2 2.3 0.45 10.1 2.3 2.0 1 1 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Shikimate_DH PF01488.20 gi|48478066|ref|YP_023772.1| - 0.13 12.3 0.1 0.34 11.0 0.1 1.7 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase DAO PF01266.24 gi|48478066|ref|YP_023772.1| - 1.4 8.5 3.2 3.3 7.2 2.8 1.8 1 1 1 2 2 2 0 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|48478067|ref|YP_023773.1| - 6.2e-101 338.5 0.0 7.4e-101 338.2 0.0 1.1 1 0 0 1 1 1 1 FAD binding domain Succ_DH_flav_C PF02910.20 gi|48478067|ref|YP_023773.1| - 6.3e-45 152.3 0.5 1.2e-44 151.4 0.5 1.5 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term HI0933_like PF03486.14 gi|48478067|ref|YP_023773.1| - 1e-05 24.5 0.3 0.0019 17.0 0.8 2.5 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox_2 PF07992.14 gi|48478067|ref|YP_023773.1| - 1.4e-05 24.5 0.1 0.0044 16.3 0.0 2.6 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|48478067|ref|YP_023773.1| - 0.00014 21.2 0.1 0.00023 20.5 0.1 1.3 1 0 0 1 1 1 1 FAD binding domain DAO PF01266.24 gi|48478067|ref|YP_023773.1| - 0.00039 20.1 0.4 0.0019 17.9 0.4 2.0 1 1 0 1 1 1 1 FAD dependent oxidoreductase Thi4 PF01946.17 gi|48478067|ref|YP_023773.1| - 0.0059 15.9 0.4 0.05 12.8 0.2 2.2 2 0 0 2 2 2 1 Thi4 family NAD_binding_8 PF13450.6 gi|48478067|ref|YP_023773.1| - 0.0073 16.5 0.6 0.067 13.4 1.1 2.4 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain GIDA PF01134.22 gi|48478067|ref|YP_023773.1| - 0.025 13.7 1.9 0.049 12.7 1.9 1.5 1 0 0 1 1 1 0 Glucose inhibited division protein A GP41 PF00517.17 gi|48478067|ref|YP_023773.1| - 0.085 12.8 0.0 0.13 12.1 0.0 1.4 1 0 0 1 1 1 0 Retroviral envelope protein Lycopene_cycl PF05834.12 gi|48478067|ref|YP_023773.1| - 0.19 10.8 0.2 0.32 10.0 0.2 1.3 1 0 0 1 1 1 0 Lycopene cyclase protein Pyr_redox PF00070.27 gi|48478067|ref|YP_023773.1| - 0.36 11.4 1.1 0.97 10.0 1.1 1.8 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|48478067|ref|YP_023773.1| - 1 8.6 3.8 1.8 7.8 3.8 1.3 1 0 0 1 1 1 0 FAD dependent oxidoreductase Amino_oxidase PF01593.24 gi|48478067|ref|YP_023773.1| - 2.3 7.4 4.7 5.5 6.2 0.4 2.5 3 0 0 3 3 3 0 Flavin containing amine oxidoreductase Fer2_3 PF13085.6 gi|48478068|ref|YP_023774.1| - 1.2e-29 102.5 0.1 2.5e-29 101.5 0.1 1.5 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer4_8 PF13183.6 gi|48478068|ref|YP_023774.1| - 7.1e-12 45.6 2.8 7.1e-12 45.6 2.8 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|48478068|ref|YP_023774.1| - 3.1e-09 37.3 4.0 3.1e-09 37.3 4.0 2.5 2 1 1 3 3 3 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|48478068|ref|YP_023774.1| - 8.5e-08 32.6 13.0 7.3e-07 29.6 5.4 2.5 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|48478068|ref|YP_023774.1| - 1.5e-07 31.4 13.3 2.7e-06 27.5 10.0 3.2 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|48478068|ref|YP_023774.1| - 2.9e-07 30.5 7.0 2.9e-07 30.5 7.0 2.2 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|48478068|ref|YP_023774.1| - 5.2e-07 30.5 3.3 5.2e-07 30.5 3.3 3.0 2 1 1 3 3 3 2 4Fe-4S double cluster binding domain Fer4 PF00037.27 gi|48478068|ref|YP_023774.1| - 0.00015 21.4 18.6 0.0046 16.7 2.6 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_18 PF13746.6 gi|48478068|ref|YP_023774.1| - 0.00015 21.9 4.9 0.11 12.8 0.1 2.9 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|48478068|ref|YP_023774.1| - 0.00016 21.6 17.8 0.0051 16.8 1.6 3.3 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|48478068|ref|YP_023774.1| - 0.0003 20.8 11.6 0.025 14.7 0.2 2.9 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|48478068|ref|YP_023774.1| - 0.0039 17.6 14.2 0.091 13.3 0.6 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|48478068|ref|YP_023774.1| - 0.018 15.1 21.4 0.023 14.8 3.7 3.2 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_15 PF13459.6 gi|48478068|ref|YP_023774.1| - 0.038 14.7 7.3 1.7 9.4 0.2 2.9 2 1 0 2 2 2 0 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|48478068|ref|YP_023774.1| - 0.047 14.2 12.7 0.51 10.9 2.7 3.0 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer2 PF00111.27 gi|48478068|ref|YP_023774.1| - 0.054 13.5 0.3 0.054 13.5 0.3 2.5 2 1 1 3 3 3 0 2Fe-2S iron-sulfur cluster binding domain Fer4_22 PF17179.4 gi|48478068|ref|YP_023774.1| - 1.6 9.6 8.8 4.1 8.3 0.1 3.3 3 1 1 4 4 4 0 4Fe-4S dicluster domain zf-C2H2_11 PF16622.5 gi|48478068|ref|YP_023774.1| - 3.1 7.6 8.8 12 5.7 2.0 2.6 2 0 0 2 2 2 0 zinc-finger C2H2-type Fer4_3 PF12798.7 gi|48478068|ref|YP_023774.1| - 6.1 8.0 25.5 0.49 11.5 3.0 3.2 3 0 0 3 3 2 0 4Fe-4S binding domain CCG PF02754.16 gi|48478069|ref|YP_023775.1| - 2.9e-30 104.3 0.4 2.2e-14 53.4 0.1 2.2 2 0 0 2 2 2 2 Cysteine-rich domain TPP_enzyme_C PF02775.21 gi|48478071|ref|YP_023777.1| - 1.9e-30 105.7 0.1 2.8e-30 105.1 0.1 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.8 gi|48478071|ref|YP_023777.1| - 2.9e-21 75.3 0.1 5e-21 74.6 0.1 1.4 1 0 0 1 1 1 1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal POR_N PF01855.19 gi|48478072|ref|YP_023778.1| - 8.5e-56 189.3 0.0 1.3e-55 188.7 0.0 1.2 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.18 gi|48478072|ref|YP_023778.1| - 6.6e-46 156.6 0.1 1.1e-44 152.7 0.0 2.6 3 0 0 3 3 3 1 Pyruvate ferredoxin/flavodoxin oxidoreductase PFOR_II PF17147.4 gi|48478072|ref|YP_023778.1| - 3.2e-10 40.2 0.0 8.8e-09 35.6 0.0 2.5 2 0 0 2 2 2 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|48478072|ref|YP_023778.1| - 1.9e-06 27.8 0.0 5.1e-06 26.4 0.0 1.7 1 0 0 1 1 1 1 Transketolase, C-terminal domain TPP_enzyme_N PF02776.18 gi|48478072|ref|YP_023778.1| - 3.7e-05 23.4 0.1 7.1e-05 22.5 0.1 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CoA_binding PF02629.19 gi|48478074|ref|YP_023780.1| - 9.6e-26 90.3 2.8 1.1e-25 90.2 0.1 2.4 2 1 0 2 2 2 1 CoA binding domain Ligase_CoA PF00549.19 gi|48478074|ref|YP_023780.1| - 7.4e-20 71.3 0.5 1.2e-19 70.6 0.5 1.3 1 0 0 1 1 1 1 CoA-ligase Succ_CoA_lig PF13607.6 gi|48478074|ref|YP_023780.1| - 3.4e-10 39.9 0.0 5.8e-10 39.1 0.0 1.4 1 0 0 1 1 1 1 Succinyl-CoA ligase like flavodoxin domain IlvN PF07991.12 gi|48478074|ref|YP_023780.1| - 0.0029 17.2 0.3 0.0049 16.5 0.3 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain GFO_IDH_MocA PF01408.22 gi|48478074|ref|YP_023780.1| - 0.0059 17.4 0.1 0.039 14.8 0.0 2.3 2 1 1 3 3 3 1 Oxidoreductase family, NAD-binding Rossmann fold ATP-grasp_2 PF08442.10 gi|48478075|ref|YP_023781.1| - 4.3e-59 199.5 0.6 4.6e-58 196.1 0.1 2.0 2 0 0 2 2 2 1 ATP-grasp domain Ligase_CoA PF00549.19 gi|48478075|ref|YP_023781.1| - 1.6e-10 41.0 0.2 3.6e-10 39.9 0.2 1.6 1 0 0 1 1 1 1 CoA-ligase ATP-grasp_5 PF13549.6 gi|48478075|ref|YP_023781.1| - 2.8e-07 30.2 0.3 1.4e-05 24.7 0.3 2.3 1 1 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.17 gi|48478075|ref|YP_023781.1| - 1.8e-05 24.3 0.1 0.00046 19.7 0.0 2.2 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, ATP binding domain GARS_A PF01071.19 gi|48478075|ref|YP_023781.1| - 0.0005 19.9 0.0 0.0013 18.6 0.0 1.6 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain QRPTase_C PF01729.19 gi|48478076|ref|YP_023782.1| - 2.6e-22 79.4 0.0 4.2e-22 78.7 0.0 1.3 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain Desulfoferrod_N PF06397.12 gi|48478076|ref|YP_023782.1| - 0.0052 16.4 0.8 0.013 15.1 0.8 1.7 1 0 0 1 1 1 1 Desulfoferrodoxin, N-terminal domain DUF3311 PF11755.8 gi|48478077|ref|YP_023783.1| - 1.2e-19 70.0 4.8 1.4e-19 69.7 4.8 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3311) SSF PF00474.17 gi|48478078|ref|YP_023784.1| - 7.5e-27 94.2 30.1 1.1e-26 93.6 30.1 1.2 1 0 0 1 1 1 1 Sodium:solute symporter family Sid-5 PF17204.3 gi|48478078|ref|YP_023784.1| - 0.43 10.8 1.9 19 5.5 0.2 2.7 2 0 0 2 2 2 0 Sid-5 family FixQ PF05545.11 gi|48478078|ref|YP_023784.1| - 5 7.2 12.8 8 6.5 5.7 3.9 2 0 0 2 2 2 0 Cbb3-type cytochrome oxidase component FixQ Pcc1 PF09341.10 gi|48478079|ref|YP_023785.1| - 0.076 13.2 0.2 0.096 12.8 0.2 1.3 1 1 0 1 1 1 0 Transcription factor Pcc1 Prefoldin_2 PF01920.20 gi|48478080|ref|YP_023786.1| - 2.9e-23 81.8 16.8 3.3e-23 81.7 16.8 1.0 1 0 0 1 1 1 1 Prefoldin subunit KASH_CCD PF14662.6 gi|48478080|ref|YP_023786.1| - 0.0002 21.3 14.6 0.0087 15.9 8.1 2.0 2 0 0 2 2 2 2 Coiled-coil region of CCDC155 or KASH DUF3585 PF12130.8 gi|48478080|ref|YP_023786.1| - 0.0023 18.1 9.8 0.0037 17.4 9.8 1.4 1 1 0 1 1 1 1 Bivalent Mical/EHBP Rab binding domain COG5 PF10392.9 gi|48478080|ref|YP_023786.1| - 0.0027 17.9 8.7 0.011 16.0 2.3 2.0 2 0 0 2 2 2 1 Golgi transport complex subunit 5 CREPT PF16566.5 gi|48478080|ref|YP_023786.1| - 0.011 16.0 13.6 0.27 11.4 0.2 2.0 1 1 1 2 2 2 0 Cell-cycle alteration and expression-elevated protein in tumour Sin3_corepress PF08295.12 gi|48478080|ref|YP_023786.1| - 0.014 15.4 1.7 0.03 14.4 0.0 2.1 2 1 0 2 2 2 0 Sin3 family co-repressor Leu_zip PF15294.6 gi|48478080|ref|YP_023786.1| - 0.017 14.7 8.5 0.021 14.4 8.5 1.0 1 0 0 1 1 1 0 Leucine zipper BLOC1_2 PF10046.9 gi|48478080|ref|YP_023786.1| - 0.021 15.1 12.7 0.081 13.2 2.4 2.3 2 0 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 ATG16 PF08614.11 gi|48478080|ref|YP_023786.1| - 0.023 14.9 10.6 0.065 13.5 3.8 1.9 1 1 1 2 2 2 0 Autophagy protein 16 (ATG16) Prefoldin PF02996.17 gi|48478080|ref|YP_023786.1| - 0.044 13.7 13.9 0.1 12.5 0.2 2.4 1 1 1 2 2 2 0 Prefoldin subunit NPR1_like_C PF12313.8 gi|48478080|ref|YP_023786.1| - 0.064 12.8 3.4 0.1 12.1 3.4 1.3 1 0 0 1 1 1 0 NPR1/NIM1 like defence protein C terminal E2F_CC-MB PF16421.5 gi|48478080|ref|YP_023786.1| - 0.079 13.3 7.6 0.64 10.4 0.2 2.3 1 1 1 2 2 2 0 E2F transcription factor CC-MB domain FH2 PF02181.23 gi|48478080|ref|YP_023786.1| - 0.093 11.8 7.6 0.42 9.7 2.8 2.0 2 0 0 2 2 2 0 Formin Homology 2 Domain ADIP PF11559.8 gi|48478080|ref|YP_023786.1| - 0.12 12.5 15.3 0.081 13.0 8.0 2.0 2 0 0 2 2 2 0 Afadin- and alpha -actinin-Binding Mod_r PF07200.13 gi|48478080|ref|YP_023786.1| - 0.15 12.2 13.0 1.6 8.8 0.3 2.1 2 0 0 2 2 2 0 Modifier of rudimentary (Mod(r)) protein Spc7 PF08317.11 gi|48478080|ref|YP_023786.1| - 0.33 9.8 11.6 1.4 7.7 0.5 2.0 2 0 0 2 2 2 0 Spc7 kinetochore protein DUF4200 PF13863.6 gi|48478080|ref|YP_023786.1| - 0.42 11.0 16.2 3.4 8.1 0.8 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4200) Uso1_p115_C PF04871.13 gi|48478080|ref|YP_023786.1| - 0.46 10.9 14.2 1.5 9.2 9.8 2.0 2 0 0 2 2 2 0 Uso1 / p115 like vesicle tethering protein, C terminal region IFT57 PF10498.9 gi|48478080|ref|YP_023786.1| - 0.77 8.7 12.6 0.77 8.7 7.3 2.0 2 0 0 2 2 2 0 Intra-flagellar transport protein 57 Laminin_I PF06008.14 gi|48478080|ref|YP_023786.1| - 0.82 9.3 15.3 0.3 10.8 1.5 2.0 1 1 1 2 2 2 0 Laminin Domain I PCRF PF03462.18 gi|48478080|ref|YP_023786.1| - 0.84 9.5 7.0 1.4 8.7 7.0 1.4 1 1 0 1 1 1 0 PCRF domain DUF641 PF04859.12 gi|48478080|ref|YP_023786.1| - 1 9.7 10.1 3.1 8.1 10.1 1.8 1 1 0 1 1 1 0 Plant protein of unknown function (DUF641) FliD_C PF07195.12 gi|48478080|ref|YP_023786.1| - 1.2 8.5 13.2 0.77 9.1 5.3 2.1 1 1 1 2 2 2 0 Flagellar hook-associated protein 2 C-terminus Spc24 PF08286.11 gi|48478080|ref|YP_023786.1| - 1.3 9.3 13.8 0.64 10.3 0.6 2.2 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 Nsp1_C PF05064.13 gi|48478080|ref|YP_023786.1| - 1.6 8.5 11.8 0.19 11.6 0.6 2.1 2 0 0 2 2 2 0 Nsp1-like C-terminal region Vir_act_alpha_C PF10400.9 gi|48478080|ref|YP_023786.1| - 1.8 9.3 5.9 2.5 8.9 2.2 2.3 2 0 0 2 2 2 0 Virulence activator alpha C-term CENP-H PF05837.12 gi|48478080|ref|YP_023786.1| - 2.1 8.8 13.2 0.52 10.7 5.4 2.1 1 1 1 2 2 2 0 Centromere protein H (CENP-H) MerR-DNA-bind PF09278.11 gi|48478080|ref|YP_023786.1| - 2.2 8.9 9.5 4.6 7.9 2.1 2.8 2 1 0 2 2 2 0 MerR, DNA binding DUF1664 PF07889.12 gi|48478080|ref|YP_023786.1| - 2.2 8.3 9.1 1.2 9.2 1.1 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) DUF3450 PF11932.8 gi|48478080|ref|YP_023786.1| - 2.3 7.5 18.2 0.39 10.0 1.7 2.0 1 1 0 2 2 2 0 Protein of unknown function (DUF3450) SlyX PF04102.12 gi|48478080|ref|YP_023786.1| - 3.3 8.4 12.5 0.75 10.5 0.7 2.3 2 0 0 2 2 2 0 SlyX Med4 PF10018.9 gi|48478080|ref|YP_023786.1| - 3.6 7.2 13.1 1.7 8.3 0.3 2.0 2 0 0 2 2 2 0 Vitamin-D-receptor interacting Mediator subunit 4 DUF724 PF05266.14 gi|48478080|ref|YP_023786.1| - 4.4 7.1 13.6 22 4.8 13.6 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF724) DivIC PF04977.15 gi|48478080|ref|YP_023786.1| - 5.8 6.8 13.5 0.57 10.0 1.1 2.3 2 0 0 2 2 2 0 Septum formation initiator Spt5_N PF11942.8 gi|48478080|ref|YP_023786.1| - 6.2 7.9 9.4 3.2 8.8 5.8 2.0 2 1 0 2 2 2 0 Spt5 transcription elongation factor, acidic N-terminal DUF2203 PF09969.9 gi|48478080|ref|YP_023786.1| - 7.3 7.3 9.0 24 5.7 0.1 2.1 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2203) OmpH PF03938.14 gi|48478080|ref|YP_023786.1| - 7.5 6.9 21.8 47 4.3 21.8 1.9 1 1 0 1 1 1 0 Outer membrane protein (OmpH-like) FlaC_arch PF05377.11 gi|48478080|ref|YP_023786.1| - 7.9 7.0 10.9 4.6 7.7 0.4 2.4 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) DUF4407 PF14362.6 gi|48478080|ref|YP_023786.1| - 9.1 5.5 11.5 35 3.6 11.5 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) GCHY-1 PF02649.14 gi|48478081|ref|YP_023787.1| - 5.3e-63 212.9 0.0 7.5e-63 212.5 0.0 1.2 1 0 0 1 1 1 1 Type I GTP cyclohydrolase folE2 CTP_transf_like PF01467.26 gi|48478082|ref|YP_023788.1| - 1.6e-17 64.0 0.1 1.9e-17 63.8 0.1 1.1 1 0 0 1 1 1 1 Cytidylyltransferase-like Urm1 PF09138.11 gi|48478082|ref|YP_023788.1| - 0.053 13.9 0.0 0.071 13.5 0.0 1.4 1 0 0 1 1 1 0 Urm1 (Ubiquitin related modifier) Adenosine_kin PF04008.14 gi|48478083|ref|YP_023789.1| - 5.5e-71 237.3 0.1 6.2e-71 237.2 0.1 1.0 1 0 0 1 1 1 1 Adenosine specific kinase FMN_dh PF01070.18 gi|48478084|ref|YP_023790.1| - 1.2e-115 386.3 0.0 1.4e-115 386.1 0.0 1.0 1 0 0 1 1 1 1 FMN-dependent dehydrogenase IMPDH PF00478.25 gi|48478084|ref|YP_023790.1| - 0.00026 20.1 0.5 0.00085 18.4 0.2 1.8 1 1 1 2 2 2 1 IMP dehydrogenase / GMP reductase domain His_biosynth PF00977.21 gi|48478084|ref|YP_023790.1| - 0.00074 19.0 0.0 1 8.8 0.0 2.6 3 0 0 3 3 3 2 Histidine biosynthesis protein ThiG PF05690.14 gi|48478084|ref|YP_023790.1| - 0.0075 15.6 0.1 0.12 11.7 0.1 2.2 1 1 1 2 2 2 1 Thiazole biosynthesis protein ThiG Glu_synthase PF01645.17 gi|48478084|ref|YP_023790.1| - 0.045 12.9 0.1 0.077 12.1 0.1 1.4 1 0 0 1 1 1 0 Conserved region in glutamate synthase PDT PF00800.18 gi|48478085|ref|YP_023791.1| - 1.9e-55 187.5 0.1 2.5e-55 187.1 0.1 1.1 1 0 0 1 1 1 1 Prephenate dehydratase ACT PF01842.25 gi|48478085|ref|YP_023791.1| - 1e-07 31.6 0.0 1.8e-07 30.8 0.0 1.4 1 0 0 1 1 1 1 ACT domain ACT_4 PF13291.6 gi|48478085|ref|YP_023791.1| - 0.0022 18.5 0.1 0.0085 16.7 0.0 2.1 2 0 0 2 2 2 1 ACT domain Radical_SAM PF04055.21 gi|48478086|ref|YP_023792.1| - 1.3e-11 45.2 0.0 1.9e-11 44.6 0.0 1.2 1 0 0 1 1 1 1 Radical SAM superfamily SPASM PF13186.6 gi|48478086|ref|YP_023792.1| - 9.3e-07 29.3 0.0 2.7e-06 27.8 0.0 1.8 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.6 gi|48478086|ref|YP_023792.1| - 0.018 15.3 0.0 0.045 14.0 0.0 1.7 1 0 0 1 1 1 0 4Fe-4S single cluster domain TPP_enzyme_M PF00205.22 gi|48478086|ref|YP_023792.1| - 0.12 12.1 0.0 0.98 9.2 0.0 2.0 2 0 0 2 2 2 0 Thiamine pyrophosphate enzyme, central domain VIT1 PF01988.19 gi|48478087|ref|YP_023793.1| - 3.6e-05 23.7 17.7 0.0025 17.7 8.7 2.0 1 1 1 2 2 2 2 VIT family DUF211 PF02680.14 gi|48478088|ref|YP_023794.1| - 5.4e-32 109.8 1.3 5.9e-32 109.7 1.3 1.0 1 0 0 1 1 1 1 Uncharacterized ArCR, COG1888 Glyco_hydro_10 PF00331.20 gi|48478088|ref|YP_023794.1| - 0.15 11.2 0.1 0.17 11.0 0.1 1.1 1 0 0 1 1 1 0 Glycosyl hydrolase family 10 HTH_23 PF13384.6 gi|48478089|ref|YP_023795.1| - 0.00015 21.4 0.0 0.00031 20.5 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_29 PF13551.6 gi|48478089|ref|YP_023795.1| - 0.0043 17.0 0.0 0.025 14.6 0.0 2.1 2 0 0 2 2 2 1 Winged helix-turn helix HTH_28 PF13518.6 gi|48478089|ref|YP_023795.1| - 0.011 15.9 0.0 0.027 14.6 0.0 1.6 2 0 0 2 2 2 0 Helix-turn-helix domain PQQ_2 PF13360.6 gi|48478090|ref|YP_023796.1| - 8.3e-32 110.7 0.0 1.9e-17 63.6 0.0 3.8 1 1 2 3 3 3 3 PQQ-like domain PQQ PF01011.21 gi|48478090|ref|YP_023796.1| - 1.4e-22 78.5 17.1 0.0062 16.4 0.2 7.6 7 0 0 7 7 7 7 PQQ enzyme repeat PQQ_3 PF13570.6 gi|48478090|ref|YP_023796.1| - 4e-12 46.2 27.8 0.00038 20.9 0.2 8.7 9 0 0 9 9 9 4 PQQ-like domain MFS_1 PF07690.16 gi|48478091|ref|YP_023797.1| - 3.5e-17 62.4 42.1 3.5e-17 62.4 42.1 2.3 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|48478091|ref|YP_023797.1| - 2e-14 53.3 9.0 2e-14 53.3 9.0 2.2 2 0 0 2 2 2 1 Sugar (and other) transporter UDG PF03167.19 gi|48478092|ref|YP_023798.1| - 1.4e-40 138.8 0.0 2.1e-40 138.3 0.0 1.3 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily NUDIX PF00293.28 gi|48478092|ref|YP_023798.1| - 4.8e-14 52.5 0.0 9.1e-14 51.6 0.0 1.5 1 0 0 1 1 1 1 NUDIX domain 3HCDH_N PF02737.18 gi|48478093|ref|YP_023799.1| - 2.1e-61 206.9 0.1 4.7e-61 205.8 0.1 1.6 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ECH_1 PF00378.20 gi|48478093|ref|YP_023799.1| - 2.5e-49 167.9 0.0 3.7e-49 167.3 0.0 1.3 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase 3HCDH PF00725.22 gi|48478093|ref|YP_023799.1| - 9.7e-35 119.1 0.0 1.1e-24 86.9 0.0 2.7 2 0 0 2 2 2 2 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ECH_2 PF16113.5 gi|48478093|ref|YP_023799.1| - 3e-24 86.2 0.1 3.7e-22 79.3 0.0 3.0 3 1 1 4 4 4 2 Enoyl-CoA hydratase/isomerase NAD_Gly3P_dh_N PF01210.23 gi|48478093|ref|YP_023799.1| - 1.8e-05 24.8 0.0 4.7e-05 23.4 0.0 1.7 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_2 PF03446.15 gi|48478093|ref|YP_023799.1| - 0.00023 21.3 0.0 0.00056 20.1 0.0 1.7 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase UDPG_MGDP_dh_N PF03721.14 gi|48478093|ref|YP_023799.1| - 0.031 13.8 0.1 0.07 12.7 0.1 1.6 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAF PF03822.14 gi|48478093|ref|YP_023799.1| - 0.062 13.5 0.8 0.23 11.7 0.1 2.4 2 0 0 2 2 2 0 NAF domain DUF3045 PF11243.8 gi|48478093|ref|YP_023799.1| - 0.11 12.7 0.0 6.5 7.0 0.0 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3045) AMP-binding PF00501.28 gi|48478094|ref|YP_023800.1| - 5.8e-80 269.0 0.0 7.4e-80 268.6 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|48478094|ref|YP_023800.1| - 7.3e-14 52.5 0.0 1.6e-13 51.4 0.0 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain S4_2 PF13275.6 gi|48478094|ref|YP_023800.1| - 0.12 12.3 0.0 0.33 10.8 0.0 1.7 1 0 0 1 1 1 0 S4 domain Thiolase_N PF00108.23 gi|48478095|ref|YP_023801.1| - 5.5e-61 206.2 0.0 1.2e-60 205.0 0.0 1.6 2 0 0 2 2 2 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|48478095|ref|YP_023801.1| - 2.6e-45 153.0 0.1 1e-44 151.1 0.0 2.0 2 0 0 2 2 2 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 gi|48478095|ref|YP_023801.1| - 3.6e-07 30.0 0.3 9.8e-07 28.6 0.3 1.7 1 0 0 1 1 1 1 Beta-ketoacyl synthase, N-terminal domain SpoVAD PF07451.11 gi|48478095|ref|YP_023801.1| - 0.023 13.4 0.0 0.052 12.3 0.0 1.6 1 0 0 1 1 1 0 Stage V sporulation protein AD (SpoVAD) Acyl-CoA_dh_M PF02770.19 gi|48478096|ref|YP_023802.1| - 1.8e-28 98.6 0.1 3.3e-28 97.7 0.1 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_1 PF00441.24 gi|48478096|ref|YP_023802.1| - 1.9e-28 99.6 1.6 3.1e-28 98.9 1.6 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_2 PF08028.11 gi|48478096|ref|YP_023802.1| - 1.2e-09 38.6 0.6 1.9e-09 37.9 0.6 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|48478096|ref|YP_023802.1| - 9.8e-07 29.4 0.6 0.00011 22.8 0.1 2.8 2 1 0 2 2 2 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_1 PF00441.24 gi|48478097|ref|YP_023803.1| - 1.3e-11 44.9 0.0 2e-10 41.1 0.0 2.1 1 1 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|48478097|ref|YP_023803.1| - 3.5e-06 27.7 0.0 5.6e-06 27.0 0.0 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.11 gi|48478097|ref|YP_023803.1| - 5.2e-06 26.8 0.0 0.11 12.8 0.0 2.2 1 1 1 2 2 2 2 Acyl-CoA dehydrogenase, C-terminal domain Ric8 PF10165.9 gi|48478097|ref|YP_023803.1| - 0.11 11.5 0.1 0.18 10.8 0.1 1.2 1 0 0 1 1 1 0 Guanine nucleotide exchange factor synembryn DHDPS PF00701.22 gi|48478098|ref|YP_023804.1| - 4.2e-37 127.4 0.0 5.1e-37 127.2 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family AcylCoA_dehyd_C PF12186.8 gi|48478099|ref|YP_023805.1| - 0.11 12.6 1.3 0.89 9.7 0.1 2.0 2 0 0 2 2 2 0 Acyl-CoA dehydrogenase C terminal Proton_antipo_M PF00361.20 gi|48478100|ref|YP_023806.1| - 4.3e-34 118.1 38.9 4.3e-34 118.1 38.9 2.1 2 0 0 2 2 2 1 Proton-conducting membrane transporter Neurensin PF14927.6 gi|48478100|ref|YP_023806.1| - 0.01 15.5 1.5 0.39 10.4 0.2 3.3 2 0 0 2 2 2 0 Neurensin Proton_antipo_M PF00361.20 gi|48478101|ref|YP_023807.1| - 6.6e-71 238.9 30.1 6.6e-71 238.9 30.1 2.9 3 1 1 4 4 4 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|48478101|ref|YP_023807.1| - 1.3e-13 50.8 3.8 1.3e-13 50.8 3.8 4.4 5 0 0 5 5 5 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus NADH5_C PF06455.11 gi|48478101|ref|YP_023807.1| - 1.8e-08 34.2 6.1 1.8e-08 34.2 6.1 4.8 4 2 1 6 6 6 1 NADH dehydrogenase subunit 5 C-terminus ABC_tran PF00005.27 gi|48478102|ref|YP_023808.1| - 1.9e-26 93.2 0.0 2.7e-26 92.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|48478102|ref|YP_023808.1| - 1.4e-05 25.1 0.4 0.011 15.6 0.4 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|48478102|ref|YP_023808.1| - 0.0004 20.2 0.0 0.00075 19.3 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_16 PF13191.6 gi|48478102|ref|YP_023808.1| - 0.00053 20.4 0.0 0.00069 20.0 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.19 gi|48478102|ref|YP_023808.1| - 0.00064 19.2 0.3 0.4 10.1 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 gi|48478102|ref|YP_023808.1| - 0.0047 16.9 0.0 0.0086 16.0 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_23 PF13476.6 gi|48478102|ref|YP_023808.1| - 0.0089 16.5 0.2 0.019 15.5 0.2 1.4 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|48478102|ref|YP_023808.1| - 0.0096 16.2 0.1 0.035 14.4 0.1 1.8 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.6 gi|48478102|ref|YP_023808.1| - 0.0097 15.6 0.0 0.019 14.7 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_24 PF13479.6 gi|48478102|ref|YP_023808.1| - 0.02 14.6 0.1 0.04 13.6 0.1 1.5 1 0 0 1 1 1 0 AAA domain Rad17 PF03215.15 gi|48478102|ref|YP_023808.1| - 0.11 12.4 0.0 0.33 10.8 0.0 1.7 2 0 0 2 2 2 0 Rad17 P-loop domain BPD_transp_1 PF00528.22 gi|48478103|ref|YP_023809.1| - 3.2e-18 66.1 40.6 1.2e-14 54.4 14.4 2.9 2 1 1 3 3 3 2 Binding-protein-dependent transport system inner membrane component Spore_III_AB PF09548.10 gi|48478103|ref|YP_023809.1| - 0.0024 18.0 0.2 0.0042 17.2 0.2 1.4 1 0 0 1 1 1 1 Stage III sporulation protein AB (spore_III_AB) ETRAMP PF09716.10 gi|48478103|ref|YP_023809.1| - 0.1 12.7 2.4 0.56 10.3 0.0 2.8 2 0 0 2 2 2 0 Malarial early transcribed membrane protein (ETRAMP) DUF5337 PF17272.2 gi|48478103|ref|YP_023809.1| - 2 8.3 6.9 3.1 7.7 0.2 3.6 3 0 0 3 3 3 0 Family of unknown function (DUF5337) AAA_assoc_C PF09821.9 gi|48478104|ref|YP_023810.1| - 1.3e-26 93.4 0.0 1.7e-26 93.1 0.0 1.1 1 0 0 1 1 1 1 C-terminal AAA-associated domain ABC_tran PF00005.27 gi|48478105|ref|YP_023811.1| - 3.6e-35 121.5 0.0 7.3e-35 120.5 0.0 1.5 2 0 0 2 2 1 1 ABC transporter AAA_21 PF13304.6 gi|48478105|ref|YP_023811.1| - 3.5e-09 36.9 0.4 0.0019 18.1 0.2 2.3 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|48478105|ref|YP_023811.1| - 8.8e-06 25.3 0.1 3.1e-05 23.5 0.1 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 gi|48478105|ref|YP_023811.1| - 7.2e-05 22.7 0.1 0.00032 20.6 0.0 2.0 2 0 0 2 2 2 1 RsgA GTPase AAA_16 PF13191.6 gi|48478105|ref|YP_023811.1| - 0.0012 19.3 0.2 0.0031 17.9 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|48478105|ref|YP_023811.1| - 0.0023 18.2 0.3 0.0052 17.1 0.3 1.7 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|48478105|ref|YP_023811.1| - 0.0033 17.1 0.1 0.007 16.1 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain Rad17 PF03215.15 gi|48478105|ref|YP_023811.1| - 0.0062 16.5 0.0 0.011 15.6 0.0 1.4 1 0 0 1 1 1 1 Rad17 P-loop domain MMR_HSR1 PF01926.23 gi|48478105|ref|YP_023811.1| - 0.0071 16.4 0.2 0.015 15.3 0.2 1.8 1 1 0 1 1 1 1 50S ribosome-binding GTPase DUF4824 PF16106.5 gi|48478105|ref|YP_023811.1| - 0.01 15.1 0.2 0.015 14.6 0.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4824) DLIC PF05783.11 gi|48478105|ref|YP_023811.1| - 0.011 14.5 0.1 0.018 13.9 0.1 1.2 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) AAA_30 PF13604.6 gi|48478105|ref|YP_023811.1| - 0.014 15.1 0.2 0.055 13.2 0.0 1.8 2 0 0 2 2 2 0 AAA domain T2SSE PF00437.20 gi|48478105|ref|YP_023811.1| - 0.019 14.1 0.0 0.032 13.3 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_25 PF13481.6 gi|48478105|ref|YP_023811.1| - 0.03 13.9 0.0 0.11 12.0 0.1 1.8 2 0 0 2 2 2 0 AAA domain Adeno_IVa2 PF02456.15 gi|48478105|ref|YP_023811.1| - 0.06 12.1 0.0 0.11 11.3 0.0 1.4 1 0 0 1 1 1 0 Adenovirus IVa2 protein AAA_33 PF13671.6 gi|48478105|ref|YP_023811.1| - 0.074 13.2 0.9 0.25 11.5 0.9 1.9 1 1 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|48478105|ref|YP_023811.1| - 0.079 12.9 0.0 0.16 11.9 0.0 1.5 1 0 0 1 1 1 0 NACHT domain AAA_24 PF13479.6 gi|48478105|ref|YP_023811.1| - 0.085 12.6 0.0 0.17 11.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain cobW PF02492.19 gi|48478105|ref|YP_023811.1| - 0.088 12.4 0.1 0.17 11.5 0.1 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain SbcCD_C PF13558.6 gi|48478105|ref|YP_023811.1| - 0.091 13.0 0.1 1.3 9.3 0.1 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_14 PF13173.6 gi|48478105|ref|YP_023811.1| - 0.092 12.8 0.1 0.47 10.5 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA PF00004.29 gi|48478105|ref|YP_023811.1| - 0.11 12.9 0.1 0.25 11.7 0.1 1.8 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_23 PF13476.6 gi|48478105|ref|YP_023811.1| - 0.12 12.8 3.0 0.18 12.3 0.1 2.4 3 0 0 3 3 3 0 AAA domain AAA_28 PF13521.6 gi|48478105|ref|YP_023811.1| - 0.13 12.5 0.7 0.48 10.7 0.1 2.1 2 1 0 2 2 2 0 AAA domain BPD_transp_1 PF00528.22 gi|48478106|ref|YP_023812.1| - 6.1e-13 48.9 17.1 6.1e-13 48.9 17.1 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component m04gp34like PF12216.8 gi|48478106|ref|YP_023812.1| - 8.3 5.9 6.2 1.3 8.5 0.6 2.1 2 0 0 2 2 2 0 Immune evasion protein BPD_transp_1 PF00528.22 gi|48478107|ref|YP_023813.1| - 2.1e-12 47.2 24.4 2.1e-12 47.2 24.4 1.9 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_8 PF13416.6 gi|48478108|ref|YP_023814.1| - 5.1e-09 36.3 3.0 0.00075 19.4 2.1 2.2 2 0 0 2 2 2 2 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|48478108|ref|YP_023814.1| - 9.5e-09 35.6 5.9 4e-08 33.6 2.9 2.1 2 0 0 2 2 2 2 Bacterial extracellular solute-binding protein FdhD-NarQ PF02634.15 gi|48478109|ref|YP_023815.1| - 3.3e-72 243.0 0.0 3.7e-72 242.8 0.0 1.0 1 0 0 1 1 1 1 FdhD/NarQ family EF-hand_3 PF09069.11 gi|48478110|ref|YP_023816.1| - 0.04 14.3 0.0 0.059 13.8 0.0 1.2 1 0 0 1 1 1 0 EF-hand DUF2067 PF09840.9 gi|48478110|ref|YP_023816.1| - 0.044 13.3 0.3 0.061 12.9 0.3 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2067) Potyvirid-P3 PF13608.6 gi|48478110|ref|YP_023816.1| - 0.057 12.5 0.0 0.071 12.1 0.0 1.1 1 0 0 1 1 1 0 Protein P3 of Potyviral polyprotein CdvA PF18822.1 gi|48478110|ref|YP_023816.1| - 0.09 12.6 0.7 1.5 8.7 0.2 2.2 2 0 0 2 2 2 0 CdvA-like coiled-coil domain FliS PF02561.14 gi|48478110|ref|YP_023816.1| - 0.14 12.4 1.5 0.3 11.4 0.9 1.8 1 1 0 1 1 1 0 Flagellar protein FliS Molybdopterin PF00384.22 gi|48478111|ref|YP_023817.1| - 1.6e-90 304.2 0.3 2.3e-90 303.7 0.3 1.2 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|48478111|ref|YP_023817.1| - 3.3e-24 85.1 0.0 9e-24 83.7 0.0 1.8 2 0 0 2 2 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 gi|48478111|ref|YP_023817.1| - 2.9e-17 62.4 0.6 2.9e-17 62.4 0.6 2.3 2 0 0 2 2 2 1 Molybdopterin oxidoreductase Fe4S4 domain Fer2_4 PF13510.6 gi|48478111|ref|YP_023817.1| - 3e-12 46.4 0.0 6.9e-12 45.2 0.0 1.7 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer4 PF00037.27 gi|48478111|ref|YP_023817.1| - 1.8e-11 43.3 17.5 4.2e-07 29.5 1.5 3.6 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|48478111|ref|YP_023817.1| - 2.2e-08 34.1 8.0 2.2e-08 34.1 8.0 2.8 3 1 0 3 3 2 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|48478111|ref|YP_023817.1| - 1e-07 31.7 19.0 4.4e-06 26.5 2.2 3.2 3 0 0 3 3 2 2 4Fe-4S binding domain NADH-G_4Fe-4S_3 PF10588.9 gi|48478111|ref|YP_023817.1| - 4.5e-07 29.3 2.2 4.5e-07 29.3 2.2 2.5 3 0 0 3 3 1 1 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Fer4_10 PF13237.6 gi|48478111|ref|YP_023817.1| - 1.4e-06 28.3 21.9 6.3e-06 26.2 2.3 3.4 2 1 2 4 4 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|48478111|ref|YP_023817.1| - 2.9e-06 27.7 12.1 2.9e-06 27.7 12.1 3.6 1 1 3 4 4 3 3 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|48478111|ref|YP_023817.1| - 3.2e-06 27.5 6.7 3.2e-06 27.5 6.7 3.0 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|48478111|ref|YP_023817.1| - 2.5e-05 24.3 11.0 2.5e-05 24.3 11.0 3.9 2 1 1 3 3 3 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|48478111|ref|YP_023817.1| - 3.9e-05 24.5 17.9 0.0014 19.5 3.9 4.3 3 1 0 3 3 3 2 4Fe-4S double cluster binding domain Fer2 PF00111.27 gi|48478111|ref|YP_023817.1| - 0.00015 21.6 0.0 0.00015 21.6 0.0 2.1 2 0 0 2 2 1 1 2Fe-2S iron-sulfur cluster binding domain Fer4_15 PF13459.6 gi|48478111|ref|YP_023817.1| - 0.00053 20.7 5.4 0.073 13.8 0.6 3.1 3 0 0 3 3 2 2 4Fe-4S single cluster domain Fer4_2 PF12797.7 gi|48478111|ref|YP_023817.1| - 0.0014 18.6 3.2 0.0014 18.6 3.2 3.5 5 0 0 5 5 2 2 4Fe-4S binding domain zf-C2HE PF16278.5 gi|48478111|ref|YP_023817.1| - 0.0044 17.4 0.7 3.5 8.1 0.1 2.8 2 0 0 2 2 2 1 C2HE / C2H2 / C2HC zinc-binding finger FAM91_N PF14647.6 gi|48478111|ref|YP_023817.1| - 0.071 12.4 0.0 0.18 11.1 0.0 1.6 2 0 0 2 2 2 0 FAM91 N-terminus Fer4_13 PF13370.6 gi|48478111|ref|YP_023817.1| - 0.09 13.3 14.8 2.2 8.9 3.1 3.8 4 0 0 4 4 3 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_17 PF13534.6 gi|48478111|ref|YP_023817.1| - 0.68 10.5 24.5 0.024 15.2 10.9 3.7 1 1 3 4 4 4 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|48478111|ref|YP_023817.1| - 1.9 9.4 20.3 1.6 9.6 2.8 3.2 2 2 1 3 3 3 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|48478111|ref|YP_023817.1| - 7.3 7.4 23.8 0.47 11.1 2.3 3.9 4 0 0 4 4 3 0 4Fe-4S binding domain PALP PF00291.25 gi|48478112|ref|YP_023818.1| - 2.6e-57 194.5 0.0 3e-57 194.3 0.0 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme TF_Zn_Ribbon PF08271.12 gi|48478112|ref|YP_023818.1| - 1.3e-06 27.8 2.1 3.2e-06 26.6 2.1 1.7 1 0 0 1 1 1 1 TFIIB zinc-binding Desulfoferrod_N PF06397.12 gi|48478112|ref|YP_023818.1| - 0.00049 19.7 4.7 0.066 12.8 0.5 2.8 1 1 1 2 2 2 2 Desulfoferrodoxin, N-terminal domain HypA PF01155.19 gi|48478112|ref|YP_023818.1| - 0.009 16.0 0.2 0.11 12.5 0.2 2.2 2 0 0 2 2 2 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_2 PF13240.6 gi|48478112|ref|YP_023818.1| - 0.014 15.1 3.1 0.014 15.1 3.1 1.9 2 0 0 2 2 2 0 zinc-ribbon domain A2L_zn_ribbon PF08792.10 gi|48478112|ref|YP_023818.1| - 0.04 13.6 3.0 0.084 12.6 3.0 1.6 1 0 0 1 1 1 0 A2L zinc ribbon domain zinc-ribbons_6 PF07191.12 gi|48478112|ref|YP_023818.1| - 0.066 13.2 0.2 0.12 12.3 0.2 1.3 1 0 0 1 1 1 0 zinc-ribbons C1_2 PF03107.16 gi|48478112|ref|YP_023818.1| - 0.14 12.5 1.0 0.26 11.6 1.0 1.4 1 0 0 1 1 1 0 C1 domain DZR PF12773.7 gi|48478112|ref|YP_023818.1| - 0.15 12.1 0.3 0.31 11.1 0.3 1.4 1 0 0 1 1 1 0 Double zinc ribbon Zn-ribbon_8 PF09723.10 gi|48478112|ref|YP_023818.1| - 0.21 11.7 1.3 5.6 7.2 0.0 2.4 1 1 0 2 2 2 0 Zinc ribbon domain Zn_ribbon_SprT PF17283.2 gi|48478112|ref|YP_023818.1| - 0.24 11.3 1.5 0.8 9.7 1.5 1.8 1 1 0 1 1 1 0 SprT-like zinc ribbon domain zf-ribbon_3 PF13248.6 gi|48478112|ref|YP_023818.1| - 1.8 8.1 3.9 4.7 6.8 3.9 1.7 1 1 0 1 1 1 0 zinc-ribbon domain zf-FPG_IleRS PF06827.14 gi|48478112|ref|YP_023818.1| - 2.8 7.9 4.6 85 3.2 4.7 2.5 1 1 0 1 1 1 0 Zinc finger found in FPG and IleRS MarR PF01047.22 gi|48478113|ref|YP_023819.1| - 2.8e-12 46.3 0.0 6.1e-12 45.3 0.0 1.6 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|48478113|ref|YP_023819.1| - 7.6e-11 41.7 0.0 1.3e-10 41.0 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|48478113|ref|YP_023819.1| - 1.8e-07 30.6 0.4 1.7e-05 24.3 0.0 2.9 2 1 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_34 PF13601.6 gi|48478113|ref|YP_023819.1| - 3.6e-06 27.1 0.0 5.9e-06 26.4 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_27 PF13463.6 gi|48478113|ref|YP_023819.1| - 3.1e-05 24.4 0.1 9.7e-05 22.8 0.0 1.8 2 0 0 2 2 2 1 Winged helix DNA-binding domain Fe_dep_repress PF01325.19 gi|48478113|ref|YP_023819.1| - 4.5e-05 23.6 0.0 0.00012 22.2 0.0 1.7 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain TrmB PF01978.19 gi|48478113|ref|YP_023819.1| - 0.0014 18.4 0.0 0.0037 17.1 0.0 1.7 1 1 1 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.6 gi|48478113|ref|YP_023819.1| - 0.004 17.1 0.0 0.011 15.7 0.0 1.8 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain DUF2443 PF10398.9 gi|48478113|ref|YP_023819.1| - 0.0052 16.8 1.2 0.063 13.3 0.1 2.3 2 1 0 2 2 2 1 Protein of unknown function (DUF2443) DUF4423 PF14394.6 gi|48478113|ref|YP_023819.1| - 0.0079 15.9 0.0 0.017 14.8 0.0 1.5 1 1 0 1 1 1 1 Domain of unknown function (DUF4423) FtsK_gamma PF09397.10 gi|48478113|ref|YP_023819.1| - 0.011 15.5 0.0 0.019 14.8 0.0 1.4 1 0 0 1 1 1 0 Ftsk gamma domain Rrf2 PF02082.20 gi|48478113|ref|YP_023819.1| - 0.013 15.8 0.0 0.031 14.6 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator HTH_29 PF13551.6 gi|48478113|ref|YP_023819.1| - 0.016 15.2 0.0 0.027 14.5 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix HTH_AsnC-type PF13404.6 gi|48478113|ref|YP_023819.1| - 0.016 15.0 0.1 9.8 6.1 0.0 3.1 3 1 0 3 3 3 0 AsnC-type helix-turn-helix domain DUF1409 PF07197.12 gi|48478113|ref|YP_023819.1| - 0.023 14.6 0.1 4.5 7.2 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1409) HTH_47 PF16221.5 gi|48478113|ref|YP_023819.1| - 0.027 14.0 0.0 0.05 13.2 0.0 1.5 1 0 0 1 1 1 0 winged helix-turn-helix DUF1870 PF08965.10 gi|48478113|ref|YP_023819.1| - 0.1 12.6 0.6 0.22 11.6 0.1 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF1870) LexA_DNA_bind PF01726.16 gi|48478113|ref|YP_023819.1| - 0.13 12.1 0.1 0.39 10.5 0.0 1.8 2 0 0 2 2 2 0 LexA DNA binding domain MFS_1 PF07690.16 gi|48478114|ref|YP_023820.1| - 9.2e-43 146.5 56.5 9.2e-43 146.5 56.5 3.0 1 1 1 2 2 2 1 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|48478114|ref|YP_023820.1| - 0.0005 19.1 10.9 0.0005 19.1 10.9 2.7 3 0 0 3 3 3 1 Sugar (and other) transporter MFS_3 PF05977.13 gi|48478114|ref|YP_023820.1| - 0.037 12.4 12.1 0.014 13.8 2.7 2.4 2 0 0 2 2 2 0 Transmembrane secretion effector Fe-ADH PF00465.19 gi|48478115|ref|YP_023821.1| - 0.00097 18.0 0.0 0.00098 18.0 0.0 1.0 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Lactamase_B PF00753.27 gi|48478116|ref|YP_023822.1| - 8.1e-06 26.0 0.2 1.9e-05 24.8 0.2 1.6 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily FAD-oxidase_C PF02913.19 gi|48478117|ref|YP_023823.1| - 3.4e-51 174.3 0.0 5e-51 173.7 0.0 1.3 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.23 gi|48478117|ref|YP_023823.1| - 4.6e-44 149.5 0.0 8e-44 148.8 0.0 1.4 1 0 0 1 1 1 1 FAD binding domain DUF3908 PF13048.6 gi|48478117|ref|YP_023823.1| - 0.062 13.6 5.0 6.2 7.1 0.3 3.5 3 0 0 3 3 3 0 Protein of unknown function (DUF3908) Fer4_8 PF13183.6 gi|48478118|ref|YP_023824.1| - 1e-12 48.3 0.8 2.2e-12 47.2 0.8 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain CCG PF02754.16 gi|48478118|ref|YP_023824.1| - 5.5e-09 36.1 0.1 3.4e-06 27.2 0.0 3.3 3 0 0 3 3 3 1 Cysteine-rich domain Fer4_10 PF13237.6 gi|48478118|ref|YP_023824.1| - 1.3e-08 34.8 2.9 0.0016 18.5 0.1 2.9 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|48478118|ref|YP_023824.1| - 1.5e-07 31.8 1.7 1.5e-07 31.8 1.7 2.0 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|48478118|ref|YP_023824.1| - 1.8e-07 31.6 7.3 7.8e-07 29.6 7.3 2.1 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|48478118|ref|YP_023824.1| - 2.1e-07 30.5 14.9 8.6e-05 22.2 3.5 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|48478118|ref|YP_023824.1| - 1.7e-06 27.9 14.5 0.00087 19.3 2.3 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|48478118|ref|YP_023824.1| - 1.8e-06 28.0 6.3 1.7e-05 24.9 6.6 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|48478118|ref|YP_023824.1| - 2.5e-06 27.2 12.4 0.0049 16.9 2.4 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|48478118|ref|YP_023824.1| - 6.9e-06 26.2 11.0 0.012 16.1 2.4 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.6 gi|48478118|ref|YP_023824.1| - 1.4e-05 25.2 4.2 0.0079 16.4 0.0 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|48478118|ref|YP_023824.1| - 0.00018 22.4 10.0 0.054 14.4 0.2 3.4 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|48478118|ref|YP_023824.1| - 0.0034 17.5 11.0 0.36 11.0 1.4 2.6 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|48478118|ref|YP_023824.1| - 0.015 16.2 15.8 0.19 12.8 4.1 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_22 PF17179.4 gi|48478118|ref|YP_023824.1| - 0.25 12.2 12.7 1.1 10.1 1.8 3.1 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|48478118|ref|YP_023824.1| - 1.6 9.3 12.5 2.6 8.7 1.8 2.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Asn_synthase PF00733.21 gi|48478119|ref|YP_023825.1| - 6.4e-16 59.0 0.0 8.2e-10 38.9 0.0 2.0 1 1 1 2 2 2 2 Asparagine synthase NAD_synthase PF02540.17 gi|48478119|ref|YP_023825.1| - 9.2e-05 21.7 0.0 0.065 12.3 0.0 2.3 2 0 0 2 2 2 2 NAD synthase Pyr_redox_2 PF07992.14 gi|48478120|ref|YP_023826.1| - 2.8e-25 89.2 0.1 9.3e-25 87.4 0.1 1.8 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|48478120|ref|YP_023826.1| - 2.7e-05 24.7 0.1 2.7e-05 24.7 0.1 2.7 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Peptidase_M91 PF14891.6 gi|48478120|ref|YP_023826.1| - 0.1 12.9 0.5 0.19 12.0 0.0 1.6 2 0 0 2 2 2 0 Effector protein HTH_29 PF13551.6 gi|48478121|ref|YP_023827.1| - 1.2e-09 38.1 0.0 2.2e-09 37.2 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn helix HTH_28 PF13518.6 gi|48478121|ref|YP_023827.1| - 3.6e-09 36.6 0.0 6.9e-09 35.7 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 gi|48478121|ref|YP_023827.1| - 7.8e-06 25.5 0.1 3.9e-05 23.3 0.0 2.1 2 1 0 2 2 2 1 Homeodomain-like domain HTH_Tnp_IS630 PF01710.16 gi|48478121|ref|YP_023827.1| - 0.00062 19.8 0.3 0.00062 19.8 0.3 1.8 1 1 1 2 2 2 1 Transposase HTH_32 PF13565.6 gi|48478121|ref|YP_023827.1| - 0.0032 18.0 0.1 0.033 14.8 0.1 2.2 1 1 0 1 1 1 1 Homeodomain-like domain HTH_CodY PF08222.11 gi|48478121|ref|YP_023827.1| - 0.0045 16.5 0.0 0.0097 15.4 0.0 1.5 1 0 0 1 1 1 1 CodY helix-turn-helix domain LZ_Tnp_IS481 PF13011.6 gi|48478121|ref|YP_023827.1| - 0.011 16.3 0.0 0.016 15.7 0.0 1.2 1 0 0 1 1 1 0 leucine-zipper of insertion element IS481 Cytokin_check_N PF10407.9 gi|48478121|ref|YP_023827.1| - 0.037 14.0 0.3 0.093 12.7 0.3 1.7 2 0 0 2 2 2 0 Cdc14 phosphatase binding protein N-terminus TrmB PF01978.19 gi|48478121|ref|YP_023827.1| - 0.048 13.6 0.7 0.27 11.2 0.0 2.4 3 1 0 3 3 3 0 Sugar-specific transcriptional regulator TrmB Met_gamma_lyase PF06838.11 gi|48478121|ref|YP_023827.1| - 0.053 12.0 0.0 0.062 11.8 0.0 1.2 1 0 0 1 1 1 0 Methionine gamma-lyase Terminase_5 PF06056.12 gi|48478121|ref|YP_023827.1| - 0.055 13.4 0.3 0.87 9.5 0.0 2.6 3 0 0 3 3 3 0 Putative ATPase subunit of terminase (gpP-like) HTH_17 PF12728.7 gi|48478121|ref|YP_023827.1| - 0.068 13.4 1.0 7.8 6.8 0.0 2.7 2 1 1 3 3 3 0 Helix-turn-helix domain AT_hook PF02178.19 gi|48478121|ref|YP_023827.1| - 0.12 12.3 4.7 0.36 10.9 4.7 1.8 1 0 0 1 1 1 0 AT hook motif HTH_33 PF13592.6 gi|48478121|ref|YP_023827.1| - 0.19 11.4 1.1 1.1 9.0 0.0 2.5 3 0 0 3 3 3 0 Winged helix-turn helix Pro-kuma_activ PF09286.11 gi|48478122|ref|YP_023828.1| - 8.7e-18 65.0 0.0 2.5e-17 63.5 0.0 1.8 1 0 0 1 1 1 1 Pro-kumamolisin, activation domain AAA_13 PF13166.6 gi|48478122|ref|YP_023828.1| - 0.021 13.5 8.9 0.035 12.8 8.9 1.2 1 0 0 1 1 1 0 AAA domain UPF0242 PF06785.11 gi|48478122|ref|YP_023828.1| - 0.073 13.2 7.9 0.12 12.4 7.9 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus HOOK PF05622.12 gi|48478122|ref|YP_023828.1| - 0.085 11.0 7.0 0.12 10.5 7.0 1.1 1 0 0 1 1 1 0 HOOK protein TcfC PF16967.5 gi|48478122|ref|YP_023828.1| - 0.11 12.0 0.1 0.3 10.6 0.1 1.7 1 0 0 1 1 1 0 E-set like domain Golgin_A5 PF09787.9 gi|48478122|ref|YP_023828.1| - 0.11 11.9 10.8 0.17 11.3 10.8 1.1 1 0 0 1 1 1 0 Golgin subfamily A member 5 WEMBL PF05701.11 gi|48478122|ref|YP_023828.1| - 0.12 11.1 10.2 0.17 10.5 10.2 1.1 1 0 0 1 1 1 0 Weak chloroplast movement under blue light Fez1 PF06818.15 gi|48478122|ref|YP_023828.1| - 0.12 12.8 8.6 0.98 9.8 0.7 1.9 1 1 1 2 2 2 0 Fez1 FPP PF05911.11 gi|48478122|ref|YP_023828.1| - 0.14 10.3 10.8 0.2 9.8 10.8 1.1 1 0 0 1 1 1 0 Filament-like plant protein, long coiled-coil DUF872 PF05915.12 gi|48478122|ref|YP_023828.1| - 0.22 11.7 2.1 0.31 11.2 0.1 2.4 2 0 0 2 2 2 0 Eukaryotic protein of unknown function (DUF872) Spc7 PF08317.11 gi|48478122|ref|YP_023828.1| - 0.28 10.0 12.4 0.83 8.5 12.4 1.6 1 1 0 1 1 1 0 Spc7 kinetochore protein FAM76 PF16046.5 gi|48478122|ref|YP_023828.1| - 0.32 10.3 6.0 0.56 9.5 6.0 1.3 1 0 0 1 1 1 0 FAM76 protein RIFIN PF02009.16 gi|48478122|ref|YP_023828.1| - 0.89 9.4 8.1 1.5 8.7 8.1 1.3 1 0 0 1 1 1 0 Rifin Atg14 PF10186.9 gi|48478122|ref|YP_023828.1| - 1.3 8.1 8.7 3.5 6.6 8.7 1.6 1 1 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 BRE1 PF08647.11 gi|48478122|ref|YP_023828.1| - 1.6 8.9 13.2 1.1 9.4 3.2 2.4 1 1 0 2 2 2 0 BRE1 E3 ubiquitin ligase CLZ PF16526.5 gi|48478122|ref|YP_023828.1| - 1.9 8.9 7.5 6.7 7.2 0.4 2.9 2 1 1 3 3 3 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels CENP-F_leu_zip PF10473.9 gi|48478122|ref|YP_023828.1| - 2.7 8.0 12.9 6.6 6.7 12.9 1.6 1 1 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF1664 PF07889.12 gi|48478122|ref|YP_023828.1| - 3.3 7.8 8.3 6.6 6.8 1.0 2.6 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) HAUS-augmin3 PF14932.6 gi|48478122|ref|YP_023828.1| - 3.5 7.1 10.7 4.3 6.9 10.0 1.4 1 1 0 1 1 1 0 HAUS augmin-like complex subunit 3 Fib_alpha PF08702.10 gi|48478122|ref|YP_023828.1| - 6 7.1 17.8 1.9 8.7 10.1 2.3 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family DUF5082 PF16888.5 gi|48478122|ref|YP_023828.1| - 6.7 7.0 16.0 26 5.1 15.8 2.3 1 1 0 1 1 1 0 Domain of unknown function (DUF5082) DivIC PF04977.15 gi|48478122|ref|YP_023828.1| - 8 6.3 6.9 5.3 6.9 0.1 3.1 3 0 0 3 3 3 0 Septum formation initiator DUF4094 PF13334.6 gi|48478122|ref|YP_023828.1| - 8.7 6.8 5.6 3.1 8.3 0.7 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4094) Prefoldin_2 PF01920.20 gi|48478122|ref|YP_023828.1| - 9.3 6.3 8.2 2 8.4 0.2 2.7 2 1 1 3 3 3 0 Prefoldin subunit TPR_MLP1_2 PF07926.12 gi|48478122|ref|YP_023828.1| - 9.8 6.3 13.1 8 6.5 7.6 2.1 1 1 0 2 2 2 0 TPR/MLP1/MLP2-like protein FAA_hydrolase PF01557.18 gi|48478123|ref|YP_023829.1| - 3.2e-62 210.1 0.0 3.8e-62 209.8 0.0 1.1 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family KH_2 PF07650.17 gi|48478123|ref|YP_023829.1| - 0.065 13.1 0.0 0.18 11.7 0.0 1.7 1 0 0 1 1 1 0 KH domain HxlR PF01638.17 gi|48478124|ref|YP_023830.1| - 1.4e-16 60.1 0.2 2e-16 59.6 0.2 1.2 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_45 PF14947.6 gi|48478124|ref|YP_023830.1| - 2.5e-05 24.2 0.4 4.5e-05 23.3 0.4 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_34 PF13601.6 gi|48478124|ref|YP_023830.1| - 0.00027 21.1 0.0 0.00041 20.5 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_5 PF01022.20 gi|48478124|ref|YP_023830.1| - 0.00072 19.4 0.0 0.0011 18.8 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family PadR PF03551.14 gi|48478124|ref|YP_023830.1| - 0.0051 16.7 0.1 0.0082 16.1 0.1 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family DUF505 PF04458.12 gi|48478124|ref|YP_023830.1| - 0.0089 14.4 0.0 0.0091 14.4 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF505) TrmB PF01978.19 gi|48478124|ref|YP_023830.1| - 0.02 14.7 0.1 0.038 13.9 0.1 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.6 gi|48478124|ref|YP_023830.1| - 0.03 14.8 0.0 0.045 14.2 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_20 PF12840.7 gi|48478124|ref|YP_023830.1| - 0.032 14.3 0.0 0.046 13.8 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain DUF3212 PF11486.8 gi|48478124|ref|YP_023830.1| - 0.033 14.2 0.1 0.038 14.0 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3212) MarR PF01047.22 gi|48478124|ref|YP_023830.1| - 0.072 13.0 0.0 0.11 12.4 0.0 1.3 1 0 0 1 1 1 0 MarR family Phosphodiest PF01663.22 gi|48478125|ref|YP_023831.1| - 1.3e-09 38.1 1.3 2.7e-08 33.8 1.3 2.7 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase PglZ PF08665.12 gi|48478125|ref|YP_023831.1| - 1.8e-05 24.9 0.1 0.0027 17.8 0.1 2.8 1 1 1 2 2 2 2 PglZ domain Metalloenzyme PF01676.18 gi|48478125|ref|YP_023831.1| - 0.052 12.9 0.0 0.1 11.9 0.0 1.5 1 0 0 1 1 1 0 Metalloenzyme superfamily Peptidase_M13_N PF05649.13 gi|48478126|ref|YP_023832.1| - 1e-95 321.7 0.1 1.5e-95 321.2 0.1 1.2 1 0 0 1 1 1 1 Peptidase family M13 Peptidase_M13 PF01431.21 gi|48478126|ref|YP_023832.1| - 2.9e-64 216.5 0.0 4.7e-64 215.8 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M13 vATP-synt_AC39 PF01992.16 gi|48478126|ref|YP_023832.1| - 0.023 14.2 1.3 0.036 13.6 0.4 1.7 2 0 0 2 2 2 0 ATP synthase (C/AC39) subunit Peptidase_M48 PF01435.18 gi|48478126|ref|YP_023832.1| - 0.21 11.3 0.0 0.41 10.4 0.0 1.4 1 0 0 1 1 1 0 Peptidase family M48 HTH_24 PF13412.6 gi|48478127|ref|YP_023833.1| - 1.5e-19 69.3 0.6 6.2e-11 41.7 0.1 2.6 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|48478127|ref|YP_023833.1| - 1.2e-14 53.8 0.0 6.3e-07 29.1 0.0 2.6 2 0 0 2 2 2 2 AsnC-type helix-turn-helix domain MarR_2 PF12802.7 gi|48478127|ref|YP_023833.1| - 1.7e-06 27.8 0.0 0.03 14.2 0.0 2.4 2 0 0 2 2 2 2 MarR family HTH_45 PF14947.6 gi|48478127|ref|YP_023833.1| - 0.0035 17.3 0.7 0.011 15.7 0.1 2.1 2 0 0 2 2 2 1 Winged helix-turn-helix Rrf2 PF02082.20 gi|48478127|ref|YP_023833.1| - 0.0035 17.6 0.0 3.3 8.1 0.0 2.5 2 0 0 2 2 2 2 Transcriptional regulator MarR PF01047.22 gi|48478127|ref|YP_023833.1| - 0.013 15.4 0.0 0.44 10.5 0.0 2.5 2 0 0 2 2 2 0 MarR family HTH_Tnp_ISL3 PF13542.6 gi|48478127|ref|YP_023833.1| - 0.017 14.5 0.0 0.32 10.5 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 HTH_11 PF08279.12 gi|48478127|ref|YP_023833.1| - 0.034 14.1 0.1 0.94 9.5 0.0 2.8 2 0 0 2 2 2 0 HTH domain HTH_5 PF01022.20 gi|48478127|ref|YP_023833.1| - 0.048 13.5 0.0 10 6.1 0.0 2.4 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family B-block_TFIIIC PF04182.12 gi|48478127|ref|YP_023833.1| - 0.083 13.1 3.9 1.2 9.3 0.1 3.4 3 1 0 3 3 3 0 B-block binding subunit of TFIIIC HxlR PF01638.17 gi|48478127|ref|YP_023833.1| - 0.2 11.5 0.3 20 5.1 0.0 3.2 4 1 0 4 4 4 0 HxlR-like helix-turn-helix ThiS PF02597.20 gi|48478128|ref|YP_023834.1| - 1.9e-10 41.2 0.0 2.3e-10 41.0 0.0 1.1 1 0 0 1 1 1 1 ThiS family Radical_SAM PF04055.21 gi|48478129|ref|YP_023835.1| - 4.4e-30 105.3 0.2 9e-30 104.2 0.2 1.6 1 0 0 1 1 1 1 Radical SAM superfamily Mob_synth_C PF06463.13 gi|48478129|ref|YP_023835.1| - 3e-20 72.4 0.2 6.3e-20 71.4 0.0 1.7 2 0 0 2 2 2 1 Molybdenum Cofactor Synthesis C Fer4_14 PF13394.6 gi|48478129|ref|YP_023835.1| - 5.7e-09 36.1 0.0 1.2e-08 35.1 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|48478129|ref|YP_023835.1| - 2.2e-07 31.2 0.0 4.7e-07 30.1 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain ETF_QO PF05187.13 gi|48478129|ref|YP_023835.1| - 0.14 12.3 0.8 6.9 6.9 0.1 2.4 2 0 0 2 2 2 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Sugar_tr PF00083.24 gi|48478130|ref|YP_023836.1| - 2.2e-23 82.9 40.6 2.7e-23 82.6 40.6 1.1 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.16 gi|48478130|ref|YP_023836.1| - 2.5e-22 79.3 38.8 2.5e-22 79.3 38.8 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|48478130|ref|YP_023836.1| - 0.0011 17.9 10.0 0.0011 17.9 10.0 2.8 2 1 1 3 3 3 1 MFS_1 like family MFS_3 PF05977.13 gi|48478130|ref|YP_023836.1| - 0.0051 15.3 10.8 0.01 14.3 1.4 2.2 2 0 0 2 2 2 2 Transmembrane secretion effector MoaE PF02391.17 gi|48478131|ref|YP_023837.1| - 1.6e-33 115.3 0.0 1.8e-33 115.1 0.0 1.0 1 0 0 1 1 1 1 MoaE protein MoCF_biosynth PF00994.24 gi|48478132|ref|YP_023838.1| - 3.4e-21 75.4 0.0 4.1e-21 75.2 0.0 1.0 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoaC PF01967.21 gi|48478133|ref|YP_023839.1| - 3.2e-45 153.6 1.1 3.5e-45 153.4 1.1 1.0 1 0 0 1 1 1 1 MoaC family FAD_binding_7 PF03441.14 gi|48478134|ref|YP_023840.1| - 3.6e-69 232.3 1.0 4.9e-69 231.9 1.0 1.2 1 0 0 1 1 1 1 FAD binding domain of DNA photolyase DNA_photolyase PF00875.18 gi|48478134|ref|YP_023840.1| - 1e-30 106.9 0.0 1.7e-30 106.2 0.0 1.3 1 0 0 1 1 1 1 DNA photolyase Fer4_14 PF13394.6 gi|48478135|ref|YP_023841.1| - 5.7e-10 39.4 0.0 1.1e-09 38.4 0.0 1.5 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|48478135|ref|YP_023841.1| - 2.7e-05 24.5 0.1 6.2e-05 23.3 0.1 1.7 1 1 0 1 1 1 1 4Fe-4S single cluster domain Radical_SAM PF04055.21 gi|48478135|ref|YP_023841.1| - 0.00066 20.1 0.0 0.0033 17.8 0.0 2.1 1 1 0 1 1 1 1 Radical SAM superfamily AsiA PF09010.10 gi|48478135|ref|YP_023841.1| - 0.033 14.3 0.0 0.078 13.1 0.0 1.6 1 0 0 1 1 1 0 Anti-Sigma Factor A PTPS PF01242.19 gi|48478136|ref|YP_023842.1| - 2.6e-17 63.0 0.0 2.9e-17 62.8 0.0 1.1 1 0 0 1 1 1 1 6-pyruvoyl tetrahydropterin synthase FolB PF02152.18 gi|48478136|ref|YP_023842.1| - 0.043 14.4 0.0 0.054 14.1 0.0 1.3 1 0 0 1 1 1 0 Dihydroneopterin aldolase DUF1015 PF06245.11 gi|48478137|ref|YP_023843.1| - 3.4e-70 236.9 0.0 3.9e-70 236.7 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1015) DUF749 PF05370.11 gi|48478137|ref|YP_023843.1| - 0.055 13.6 0.1 0.18 11.9 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF749) ParBc PF02195.18 gi|48478137|ref|YP_023843.1| - 0.15 12.4 0.8 1.4 9.3 0.4 2.7 1 1 0 1 1 1 0 ParB-like nuclease domain AP_endonuc_2 PF01261.24 gi|48478138|ref|YP_023844.1| - 4.1e-26 91.7 0.0 5.2e-26 91.4 0.0 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel DUF840 PF05801.11 gi|48478138|ref|YP_023844.1| - 0.043 13.9 1.5 0.084 13.0 1.1 1.7 1 1 1 2 2 2 0 Lagovirus protein of unknown function (DUF840) TrmB PF01978.19 gi|48478139|ref|YP_023845.1| - 3.5e-21 74.9 0.1 1.7e-20 72.7 0.0 2.0 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB Regulator_TrmB PF11495.8 gi|48478139|ref|YP_023845.1| - 0.00013 21.2 0.0 0.00017 20.9 0.0 1.2 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB HTH_IclR PF09339.10 gi|48478139|ref|YP_023845.1| - 0.00075 19.2 0.0 0.0016 18.2 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain Rrf2 PF02082.20 gi|48478139|ref|YP_023845.1| - 0.028 14.8 0.0 0.087 13.2 0.0 1.8 2 0 0 2 2 2 0 Transcriptional regulator MarR_2 PF12802.7 gi|48478139|ref|YP_023845.1| - 0.04 13.8 0.0 0.09 12.7 0.0 1.6 1 0 0 1 1 1 0 MarR family CAMP_factor PF07373.11 gi|48478139|ref|YP_023845.1| - 0.047 13.3 0.0 0.079 12.6 0.0 1.4 1 0 0 1 1 1 0 CAMP factor (Cfa) Methyltransf_25 PF13649.6 gi|48478140|ref|YP_023846.1| - 0.081 13.6 0.0 0.18 12.6 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain MTS PF05175.14 gi|48478140|ref|YP_023846.1| - 0.19 11.3 0.0 0.32 10.5 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase small domain CMD PF02627.20 gi|48478141|ref|YP_023847.1| - 8.5e-21 73.8 0.0 1.1e-20 73.4 0.0 1.2 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family PA26 PF04636.13 gi|48478141|ref|YP_023847.1| - 0.097 11.6 0.0 0.097 11.6 0.0 1.1 1 0 0 1 1 1 0 PA26 p53-induced protein (sestrin) Ish1 PF10281.9 gi|48478141|ref|YP_023847.1| - 0.19 12.1 0.0 0.32 11.3 0.0 1.3 1 0 0 1 1 1 0 Putative stress-responsive nuclear envelope protein Glu_dehyd_C PF16912.5 gi|48478142|ref|YP_023848.1| - 6.6e-22 78.0 0.0 8.5e-22 77.7 0.0 1.1 1 0 0 1 1 1 1 Glucose dehydrogenase C-terminus ADH_N PF08240.12 gi|48478142|ref|YP_023848.1| - 9.9e-14 51.1 0.1 1.5e-13 50.5 0.1 1.3 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|48478142|ref|YP_023848.1| - 7.4e-05 22.7 0.0 0.00014 21.8 0.0 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase THF_DHG_CYH_C PF02882.19 gi|48478143|ref|YP_023849.1| - 5.2e-54 181.9 0.2 7.8e-54 181.3 0.2 1.3 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain THF_DHG_CYH PF00763.23 gi|48478143|ref|YP_023849.1| - 1.2e-22 80.4 0.8 2.5e-22 79.3 0.3 1.7 2 0 0 2 2 2 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain C166 PF17615.2 gi|48478143|ref|YP_023849.1| - 0.13 12.4 0.1 0.23 11.6 0.1 1.3 1 0 0 1 1 1 0 Family of unknown function DUF202 PF02656.15 gi|48478144|ref|YP_023850.1| - 4.9e-22 78.1 0.1 4.9e-20 71.7 0.0 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF202) SdpI PF13630.6 gi|48478144|ref|YP_023850.1| - 0.017 15.3 2.4 0.19 11.9 2.4 2.1 1 1 0 1 1 1 0 SdpI/YhfL protein family MscS_TM PF12794.7 gi|48478144|ref|YP_023850.1| - 0.023 13.5 1.0 0.025 13.5 1.0 1.0 1 0 0 1 1 1 0 Mechanosensitive ion channel inner membrane domain 1 DUF3796 PF12676.7 gi|48478144|ref|YP_023850.1| - 0.046 14.1 1.6 0.046 14.1 1.6 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3796) GRIM-19 PF06212.12 gi|48478144|ref|YP_023850.1| - 0.073 13.0 0.0 0.13 12.2 0.0 1.4 1 1 1 2 2 2 0 GRIM-19 protein DHHC PF01529.20 gi|48478144|ref|YP_023850.1| - 0.12 12.5 0.4 0.12 12.5 0.4 1.7 1 1 1 2 2 2 0 DHHC palmitoyltransferase Tetraspanin PF00335.20 gi|48478144|ref|YP_023850.1| - 0.32 10.7 3.6 0.19 11.4 0.3 1.8 1 1 0 1 1 1 0 Tetraspanin family IlvN PF07991.12 gi|48478145|ref|YP_023851.1| - 1.5e-65 219.7 0.0 2.2e-65 219.3 0.0 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain IlvC PF01450.19 gi|48478145|ref|YP_023851.1| - 7.4e-49 165.7 2.9 9e-49 165.5 2.2 1.5 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, catalytic domain F420_oxidored PF03807.17 gi|48478145|ref|YP_023851.1| - 3.3e-07 30.8 0.0 9.9e-07 29.3 0.0 1.8 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 gi|48478145|ref|YP_023851.1| - 2.2e-06 27.9 0.0 4.1e-06 27.0 0.0 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.19 gi|48478145|ref|YP_023851.1| - 0.00017 21.0 0.0 0.0003 20.2 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.23 gi|48478145|ref|YP_023851.1| - 0.00062 19.8 0.1 0.64 10.0 0.0 2.5 2 0 0 2 2 2 2 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AdoHcyase_NAD PF00670.21 gi|48478145|ref|YP_023851.1| - 0.0034 17.5 0.0 0.012 15.7 0.0 1.8 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain ApbA PF02558.16 gi|48478145|ref|YP_023851.1| - 0.025 14.2 0.1 0.085 12.5 0.1 1.9 1 1 0 1 1 1 0 Ketopantoate reductase PanE/ApbA 3HCDH_N PF02737.18 gi|48478145|ref|YP_023851.1| - 0.13 12.1 0.1 0.33 10.8 0.1 1.8 1 1 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ACT_5 PF13710.6 gi|48478146|ref|YP_023852.1| - 8.2e-05 22.4 0.0 0.0001 22.0 0.0 1.1 1 0 0 1 1 1 1 ACT domain Rota_VP4_MID PF17477.2 gi|48478146|ref|YP_023852.1| - 0.025 14.0 0.0 0.029 13.8 0.0 1.0 1 0 0 1 1 1 0 Rotavirus VP4 membrane interaction domain TPP_enzyme_N PF02776.18 gi|48478147|ref|YP_023853.1| - 1.6e-56 190.6 0.0 4.1e-54 182.8 0.0 2.3 2 0 0 2 2 2 2 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.21 gi|48478147|ref|YP_023853.1| - 2.7e-45 153.9 0.8 7.3e-45 152.5 0.1 2.1 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.22 gi|48478147|ref|YP_023853.1| - 3.5e-37 127.2 0.0 8.2e-37 126.0 0.0 1.7 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain POR_N PF01855.19 gi|48478147|ref|YP_023853.1| - 0.0021 17.8 0.2 0.052 13.3 0.2 2.5 3 0 0 3 3 3 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg CO_dh PF02552.16 gi|48478147|ref|YP_023853.1| - 0.086 12.6 0.0 0.26 11.1 0.0 1.7 1 1 0 1 1 1 0 CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit MethyltransfD12 PF02086.15 gi|48478148|ref|YP_023854.1| - 3.2e-22 79.4 9.8 6.6e-22 78.4 9.8 1.6 1 1 0 1 1 1 1 D12 class N6 adenine-specific DNA methyltransferase Cons_hypoth95 PF03602.15 gi|48478148|ref|YP_023854.1| - 0.0046 16.6 0.1 0.11 12.1 0.0 2.4 3 0 0 3 3 3 1 Conserved hypothetical protein 95 DASH_Dad4 PF08650.10 gi|48478148|ref|YP_023854.1| - 0.061 13.3 0.4 0.17 11.9 0.4 1.8 1 0 0 1 1 1 0 DASH complex subunit Dad4 DJ-1_PfpI PF01965.24 gi|48478149|ref|YP_023855.1| - 9e-47 158.9 0.0 1.1e-46 158.6 0.0 1.1 1 0 0 1 1 1 1 DJ-1/PfpI family ThiJ_like PF17124.5 gi|48478149|ref|YP_023855.1| - 0.031 14.0 0.0 1.8 8.2 0.0 2.1 1 1 1 2 2 2 0 ThiJ/PfpI family-like Epimerase PF01370.21 gi|48478150|ref|YP_023856.1| - 3.9e-21 75.6 0.0 6e-21 75.0 0.0 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|48478150|ref|YP_023856.1| - 1.2e-20 74.2 0.0 1.5e-19 70.6 0.0 2.2 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase Polysacc_synt_2 PF02719.15 gi|48478150|ref|YP_023856.1| - 3.1e-05 23.3 0.1 0.001 18.3 0.1 2.1 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein ADH_N_assoc PF13823.6 gi|48478150|ref|YP_023856.1| - 1.2 9.2 3.6 0.57 10.2 0.7 2.0 2 0 0 2 2 2 0 Alcohol dehydrogenase GroES-associated NTP_transferase PF00483.23 gi|48478151|ref|YP_023857.1| - 8.3e-16 58.3 0.0 9.7e-16 58.1 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase Ebola_NP PF05505.12 gi|48478151|ref|YP_023857.1| - 0.18 10.1 0.0 0.24 9.7 0.0 1.1 1 0 0 1 1 1 0 Ebola nucleoprotein MarC PF01914.17 gi|48478152|ref|YP_023858.1| - 2.5e-42 144.6 20.5 3.1e-42 144.3 20.5 1.0 1 0 0 1 1 1 1 MarC family integral membrane protein PRA1 PF03208.19 gi|48478152|ref|YP_023858.1| - 9.3 5.9 14.8 0.74 9.4 9.6 1.7 2 0 0 2 2 2 0 PRA1 family protein MFS_1 PF07690.16 gi|48478153|ref|YP_023859.1| - 5.2e-38 130.9 70.7 1.7e-37 129.2 58.5 3.5 1 1 0 2 2 2 1 Major Facilitator Superfamily MFS_3 PF05977.13 gi|48478153|ref|YP_023859.1| - 3.5e-05 22.4 7.6 3.5e-05 22.4 7.6 2.0 2 1 0 2 2 2 1 Transmembrane secretion effector DUF418 PF04235.12 gi|48478153|ref|YP_023859.1| - 2.9 7.8 21.9 0.31 11.0 0.4 5.6 4 2 1 5 5 5 0 Protein of unknown function (DUF418) DUF751 PF05421.11 gi|48478154|ref|YP_023860.1| - 0.0036 18.0 3.5 0.01 16.6 3.5 1.8 1 0 0 1 1 1 1 Protein of unknown function (DUF751) DUF1129 PF06570.11 gi|48478154|ref|YP_023860.1| - 0.15 11.5 2.6 0.25 10.8 2.6 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1129) Aminotran_1_2 PF00155.21 gi|48478155|ref|YP_023861.1| - 7.9e-09 35.1 0.0 8e-06 25.3 0.0 2.2 2 0 0 2 2 2 2 Aminotransferase class I and II Aminotran_5 PF00266.19 gi|48478155|ref|YP_023861.1| - 0.02 13.9 0.0 0.03 13.3 0.0 1.2 1 0 0 1 1 1 0 Aminotransferase class-V Sugar_tr PF00083.24 gi|48478156|ref|YP_023862.1| - 4.4e-52 177.5 30.3 8.1e-52 176.6 30.3 1.4 1 1 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.16 gi|48478156|ref|YP_023862.1| - 1.9e-34 119.2 58.7 5.1e-33 114.5 37.2 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Adenine_deam_C PF13382.6 gi|48478157|ref|YP_023863.1| - 1.4e-20 73.3 0.0 2.2e-20 72.7 0.0 1.3 1 0 0 1 1 1 1 Adenine deaminase C-terminal domain Amidohydro_1 PF01979.20 gi|48478157|ref|YP_023863.1| - 8.3e-08 31.9 0.0 8.2e-07 28.6 0.0 2.1 1 1 0 1 1 1 1 Amidohydrolase family Coq4 PF05019.13 gi|48478157|ref|YP_023863.1| - 0.068 12.5 0.0 0.12 11.7 0.0 1.3 1 0 0 1 1 1 0 Coenzyme Q (ubiquinone) biosynthesis protein Coq4 Peptidase_M20 PF01546.28 gi|48478158|ref|YP_023864.1| - 1.2e-28 100.3 0.0 2e-28 99.5 0.0 1.4 1 1 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|48478158|ref|YP_023864.1| - 8.1e-13 48.2 0.0 1.5e-12 47.3 0.0 1.5 1 0 0 1 1 1 1 Peptidase dimerisation domain Viral_Hsp90 PF03225.14 gi|48478158|ref|YP_023864.1| - 0.11 11.0 0.0 0.16 10.4 0.0 1.2 1 0 0 1 1 1 0 Viral heat shock protein Hsp90 homologue DUF302 PF03625.14 gi|48478159|ref|YP_023865.1| - 2.7e-10 40.0 0.0 5.7e-10 38.9 0.0 1.5 1 1 1 2 2 2 1 Domain of unknown function DUF302 SBP_bac_1 PF01547.25 gi|48478160|ref|YP_023866.1| - 3.2e-07 30.6 1.5 4.9e-07 30.0 1.5 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein Peptidase_M73 PF12389.8 gi|48478162|ref|YP_023868.1| - 0.00018 21.4 0.2 0.36 10.6 0.0 3.0 3 0 0 3 3 3 2 Camelysin metallo-endopeptidase ComP_DUS PF16732.5 gi|48478162|ref|YP_023868.1| - 0.3 12.0 3.4 1.1 10.2 0.1 2.5 1 1 1 2 2 2 0 Type IV minor pilin ComP, DNA uptake sequence receptor Peptidase_M24 PF00557.24 gi|48478163|ref|YP_023869.1| - 1.9e-37 129.0 0.0 2.3e-37 128.7 0.0 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 MaoC_dehydrat_N PF13452.6 gi|48478163|ref|YP_023869.1| - 0.098 12.8 0.0 0.15 12.2 0.0 1.3 1 0 0 1 1 1 0 N-terminal half of MaoC dehydratase Metallophos_2 PF12850.7 gi|48478164|ref|YP_023870.1| - 3.7e-23 82.5 0.0 4.7e-23 82.2 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|48478164|ref|YP_023870.1| - 2.6e-12 47.7 2.9 1e-11 45.7 2.7 1.8 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase FBPase_2 PF06874.11 gi|48478164|ref|YP_023870.1| - 2.5e-05 22.8 1.4 0.00042 18.7 0.3 2.1 1 1 1 2 2 2 2 Firmicute fructose-1,6-bisphosphatase NAD_kinase PF01513.21 gi|48478165|ref|YP_023871.1| - 1.6e-38 132.5 0.0 2.1e-38 132.2 0.0 1.1 1 0 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.24 gi|48478165|ref|YP_023871.1| - 0.00073 19.2 0.0 0.0018 17.9 0.0 1.6 1 0 0 1 1 1 1 Diacylglycerol kinase catalytic domain BcrAD_BadFG PF01869.20 gi|48478166|ref|YP_023872.1| - 5.2e-27 95.0 0.3 6.4e-27 94.7 0.3 1.1 1 0 0 1 1 1 1 BadF/BadG/BcrA/BcrD ATPase family PadR PF03551.14 gi|48478167|ref|YP_023873.1| - 7.3e-07 29.1 0.4 2.2e-06 27.5 0.2 2.0 2 1 0 2 2 2 1 Transcriptional regulator PadR-like family Stork_head PF10264.9 gi|48478167|ref|YP_023873.1| - 6.9e-05 22.9 0.5 0.0029 17.7 0.1 2.2 2 0 0 2 2 2 1 Winged helix Storkhead-box1 domain PHM7_cyt PF14703.6 gi|48478167|ref|YP_023873.1| - 0.063 13.5 1.2 0.088 13.0 1.2 1.2 1 0 0 1 1 1 0 Cytosolic domain of 10TM putative phosphate transporter Bap31_Bap29_C PF18035.1 gi|48478167|ref|YP_023873.1| - 0.066 13.2 0.6 0.13 12.3 0.6 1.5 1 0 0 1 1 1 0 Bap31/Bap29 cytoplasmic coiled-coil domain Phasin PF05597.11 gi|48478167|ref|YP_023873.1| - 0.1 12.6 0.2 0.19 11.7 0.1 1.5 2 0 0 2 2 2 0 Poly(hydroxyalcanoate) granule associated protein (phasin) Cullin_Nedd8 PF10557.9 gi|48478167|ref|YP_023873.1| - 0.15 12.1 1.8 4.2 7.5 0.1 2.2 2 0 0 2 2 2 0 Cullin protein neddylation domain ABC_tran PF00005.27 gi|48478168|ref|YP_023874.1| - 1.1e-30 107.0 0.0 1.7e-30 106.4 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|48478168|ref|YP_023874.1| - 1.3e-10 41.6 1.6 1.9e-07 31.2 0.0 2.3 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|48478168|ref|YP_023874.1| - 6e-09 36.5 0.1 1.6e-08 35.1 0.0 1.8 2 0 0 2 2 1 1 Domain of unknown function (DUF4162) AAA_23 PF13476.6 gi|48478168|ref|YP_023874.1| - 0.0021 18.6 0.4 0.0036 17.8 0.4 1.7 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|48478168|ref|YP_023874.1| - 0.0047 17.3 0.2 0.035 14.5 0.2 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) SRP54 PF00448.22 gi|48478168|ref|YP_023874.1| - 0.011 15.4 0.2 0.16 11.6 0.3 2.1 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_15 PF13175.6 gi|48478168|ref|YP_023874.1| - 0.019 14.7 0.0 0.11 12.1 0.1 2.0 2 0 0 2 2 2 0 AAA ATPase domain AAA_24 PF13479.6 gi|48478168|ref|YP_023874.1| - 0.021 14.5 0.1 0.22 11.2 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.6 gi|48478168|ref|YP_023874.1| - 0.029 14.1 0.2 0.058 13.1 0.2 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain Zeta_toxin PF06414.12 gi|48478168|ref|YP_023874.1| - 0.036 13.4 0.1 0.064 12.5 0.1 1.3 1 0 0 1 1 1 0 Zeta toxin Sucrose_synth PF00862.19 gi|48478168|ref|YP_023874.1| - 0.049 11.9 0.0 0.067 11.5 0.0 1.1 1 0 0 1 1 1 0 Sucrose synthase AAA_16 PF13191.6 gi|48478168|ref|YP_023874.1| - 0.079 13.3 0.0 0.13 12.7 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain Rad17 PF03215.15 gi|48478168|ref|YP_023874.1| - 0.083 12.8 0.0 0.13 12.1 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_30 PF13604.6 gi|48478168|ref|YP_023874.1| - 0.087 12.5 0.1 0.15 11.7 0.1 1.4 1 0 0 1 1 1 0 AAA domain G-alpha PF00503.20 gi|48478168|ref|YP_023874.1| - 0.15 11.2 0.0 0.17 11.0 0.0 1.3 1 0 0 1 1 1 0 G-protein alpha subunit ABC2_membrane PF01061.24 gi|48478169|ref|YP_023875.1| - 1.5e-29 102.9 23.4 1.5e-29 102.9 23.4 2.0 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|48478169|ref|YP_023875.1| - 2.9e-18 66.1 30.1 2.9e-18 66.1 30.1 1.7 1 1 1 2 2 2 1 ABC-2 family transporter protein NMN_transporter PF04973.12 gi|48478169|ref|YP_023875.1| - 1.4 8.8 16.8 0.023 14.7 8.0 2.2 1 1 1 2 2 2 0 Nicotinamide mononucleotide transporter Metallophos PF00149.28 gi|48478170|ref|YP_023876.1| - 2e-07 31.7 7.6 2.9e-07 31.2 7.6 1.3 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|48478170|ref|YP_023876.1| - 0.00012 22.3 0.0 0.0002 21.6 0.0 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain DHquinase_II PF01220.19 gi|48478170|ref|YP_023876.1| - 0.14 11.8 0.1 5.4 6.7 0.0 2.4 1 1 1 2 2 2 0 Dehydroquinase class II Esterase PF00756.20 gi|48478171|ref|YP_023877.1| - 6.1e-07 29.3 0.0 8.1e-07 28.9 0.0 1.3 1 0 0 1 1 1 1 Putative esterase Peptidase_M20 PF01546.28 gi|48478172|ref|YP_023878.1| - 4.6e-30 104.9 0.0 5.6e-30 104.6 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|48478172|ref|YP_023878.1| - 7.6e-15 54.8 0.0 2.7e-14 53.0 0.0 1.8 2 0 0 2 2 2 1 Peptidase dimerisation domain Peptidase_M28 PF04389.17 gi|48478172|ref|YP_023878.1| - 9.8e-06 25.4 0.0 1.8e-05 24.5 0.0 1.5 2 0 0 2 2 2 1 Peptidase family M28 MRF_C1 PF13887.6 gi|48478172|ref|YP_023878.1| - 0.18 11.0 0.0 0.36 10.0 0.0 1.5 1 0 0 1 1 1 0 Myelin gene regulatory factor -C-terminal domain 1 Thymidylate_kin PF02223.17 gi|48478173|ref|YP_023879.1| - 6.3e-25 87.9 0.2 1.1e-24 87.2 0.2 1.4 1 1 0 1 1 1 1 Thymidylate kinase dNK PF01712.19 gi|48478173|ref|YP_023879.1| - 5.2e-19 68.9 1.2 7.2e-19 68.4 1.2 1.1 1 0 0 1 1 1 1 Deoxynucleoside kinase AAA_18 PF13238.6 gi|48478173|ref|YP_023879.1| - 1.1e-08 35.7 0.0 2.7e-08 34.4 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|48478173|ref|YP_023879.1| - 3e-05 24.3 0.0 3.6e-05 24.1 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|48478173|ref|YP_023879.1| - 0.0014 18.8 0.0 0.012 15.8 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|48478173|ref|YP_023879.1| - 0.0039 17.6 0.2 0.84 10.1 0.0 2.3 2 0 0 2 2 2 2 AAA domain NB-ARC PF00931.22 gi|48478173|ref|YP_023879.1| - 0.016 14.4 0.1 0.02 14.1 0.1 1.4 1 1 0 1 1 1 0 NB-ARC domain NACHT PF05729.12 gi|48478173|ref|YP_023879.1| - 0.19 11.7 0.1 0.29 11.0 0.1 1.3 1 0 0 1 1 1 0 NACHT domain Cys_Met_Meta_PP PF01053.20 gi|48478174|ref|YP_023880.1| - 1.3e-123 412.4 0.0 1.4e-123 412.2 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.19 gi|48478174|ref|YP_023880.1| - 0.00045 19.3 0.1 0.00081 18.4 0.1 1.4 1 0 0 1 1 1 1 Aminotransferase class-V MTS PF05175.14 gi|48478174|ref|YP_023880.1| - 0.024 14.2 0.0 0.044 13.3 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase small domain SurE PF01975.17 gi|48478174|ref|YP_023880.1| - 0.13 12.1 0.1 7.6 6.3 0.0 2.4 2 0 0 2 2 2 0 Survival protein SurE Methyltransf_25 PF13649.6 gi|48478174|ref|YP_023880.1| - 0.13 12.9 0.0 0.31 11.8 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain PTH2 PF01981.16 gi|48478175|ref|YP_023881.1| - 1.1e-38 132.1 0.0 1.2e-38 132.0 0.0 1.0 1 0 0 1 1 1 1 Peptidyl-tRNA hydrolase PTH2 CarS-like PF01864.17 gi|48478176|ref|YP_023882.1| - 1.1e-39 136.2 12.4 1.2e-39 136.0 12.4 1.0 1 0 0 1 1 1 1 CDP-archaeol synthase CTP_transf_1 PF01148.20 gi|48478176|ref|YP_023882.1| - 7.5e-07 29.2 6.5 7.5e-07 29.2 6.5 2.0 1 1 1 2 2 2 1 Cytidylyltransferase family CBS PF00571.28 gi|48478177|ref|YP_023883.1| - 2.4e-20 72.7 2.1 7.3e-13 48.7 0.2 2.3 2 0 0 2 2 2 2 CBS domain HTH_3 PF01381.22 gi|48478177|ref|YP_023883.1| - 1.6e-15 56.9 0.4 1.6e-15 56.9 0.4 1.7 2 0 0 2 2 2 1 Helix-turn-helix HTH_19 PF12844.7 gi|48478177|ref|YP_023883.1| - 8.3e-12 44.9 1.6 1.8e-11 43.9 0.7 2.1 3 0 0 3 3 3 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|48478177|ref|YP_023883.1| - 9.7e-10 38.7 0.0 1.6e-09 38.0 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.6 gi|48478177|ref|YP_023883.1| - 7.8e-05 22.5 0.0 0.00016 21.5 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_37 PF13744.6 gi|48478177|ref|YP_023883.1| - 9.2e-05 22.3 0.1 0.00066 19.6 0.0 2.3 2 1 1 3 3 3 1 Helix-turn-helix domain HTH_26 PF13443.6 gi|48478177|ref|YP_023883.1| - 0.0011 19.3 0.0 0.0028 18.1 0.0 1.7 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain MqsA_antitoxin PF15731.5 gi|48478177|ref|YP_023883.1| - 0.0012 18.9 0.0 0.0023 18.0 0.0 1.4 1 0 0 1 1 1 1 Antitoxin component of bacterial toxin-antitoxin system, MqsA Pou PF00157.17 gi|48478177|ref|YP_023883.1| - 0.008 16.1 0.0 0.056 13.4 0.0 2.4 2 1 0 2 2 2 1 Pou domain - N-terminal to homeobox domain PyrBI_leader PF08052.11 gi|48478177|ref|YP_023883.1| - 0.033 14.1 0.0 0.061 13.3 0.0 1.4 1 0 0 1 1 1 0 PyrBI operon leader peptide HTH_24 PF13412.6 gi|48478177|ref|YP_023883.1| - 0.049 13.2 0.4 0.45 10.1 0.1 2.7 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding Cauli_DNA-bind PF03310.13 gi|48478177|ref|YP_023883.1| - 0.051 13.6 0.8 0.16 12.0 0.2 1.9 1 1 1 2 2 2 0 Caulimovirus DNA-binding protein E3_binding PF02817.17 gi|48478177|ref|YP_023883.1| - 0.13 12.7 0.3 1.8 9.0 0.0 2.9 3 0 0 3 3 3 0 e3 binding domain IF-2 PF11987.8 gi|48478177|ref|YP_023883.1| - 0.18 11.9 2.3 4.4 7.5 0.1 2.6 2 1 0 3 3 3 0 Translation-initiation factor 2 AAA_31 PF13614.6 gi|48478178|ref|YP_023884.1| - 2.5e-47 161.1 0.3 4.2e-47 160.3 0.3 1.3 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|48478178|ref|YP_023884.1| - 2.2e-17 63.3 0.0 4e-17 62.5 0.0 1.4 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|48478178|ref|YP_023884.1| - 5.8e-08 32.5 0.0 0.0028 17.1 0.0 2.2 2 0 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase CBP_BcsQ PF06564.12 gi|48478178|ref|YP_023884.1| - 1.3e-06 28.1 0.0 0.00055 19.5 0.0 2.3 2 1 0 2 2 2 2 Cellulose biosynthesis protein BcsQ Fer4_NifH PF00142.18 gi|48478178|ref|YP_023884.1| - 3.5e-05 23.4 0.0 0.0012 18.4 0.0 2.1 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ArsA_ATPase PF02374.15 gi|48478178|ref|YP_023884.1| - 0.00017 20.9 0.0 0.00092 18.5 0.0 2.0 2 0 0 2 2 2 1 Anion-transporting ATPase MipZ PF09140.11 gi|48478178|ref|YP_023884.1| - 0.0003 20.2 0.0 0.14 11.4 0.0 2.2 2 0 0 2 2 2 2 ATPase MipZ VirC1 PF07015.11 gi|48478178|ref|YP_023884.1| - 0.15 11.4 0.1 0.32 10.2 0.0 1.6 2 0 0 2 2 2 0 VirC1 protein Rho_N PF07498.12 gi|48478179|ref|YP_023885.1| - 0.00062 19.6 0.6 0.0013 18.6 0.6 1.6 1 0 0 1 1 1 1 Rho termination factor, N-terminal domain Stap_Strp_tox_C PF02876.17 gi|48478179|ref|YP_023885.1| - 0.029 14.7 2.6 1.7 9.0 0.2 2.2 1 1 1 2 2 2 0 Staphylococcal/Streptococcal toxin, beta-grasp domain HAD_2 PF13419.6 gi|48478180|ref|YP_023886.1| - 1.2e-31 110.2 0.1 1.9e-31 109.6 0.1 1.3 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|48478180|ref|YP_023886.1| - 5e-16 59.6 0.1 1.3e-11 45.2 0.1 2.1 1 1 0 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|48478180|ref|YP_023886.1| - 8.3e-07 29.0 0.0 1.4e-06 28.2 0.0 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.7 gi|48478180|ref|YP_023886.1| - 0.00055 20.4 0.2 0.0018 18.7 0.2 1.9 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Acid_phosphat_B PF03767.14 gi|48478180|ref|YP_023886.1| - 0.01 15.4 0.7 0.043 13.4 0.7 2.2 1 1 0 1 1 1 0 HAD superfamily, subfamily IIIB (Acid phosphatase) Acid_PPase PF12689.7 gi|48478180|ref|YP_023886.1| - 0.036 13.9 0.1 2.3 8.0 0.0 2.4 2 0 0 2 2 2 0 Acid Phosphatase Hydrolase_3 PF08282.12 gi|48478180|ref|YP_023886.1| - 0.048 13.4 3.2 4.6 6.9 0.1 3.1 4 0 0 4 4 4 0 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 gi|48478180|ref|YP_023886.1| - 0.14 12.2 0.0 0.85 9.8 0.0 2.3 2 1 0 2 2 2 0 Haloacid dehalogenase-like hydrolase Aminotran_1_2 PF00155.21 gi|48478181|ref|YP_023887.1| - 1.6e-67 228.3 0.0 1.9e-67 228.0 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|48478181|ref|YP_023887.1| - 3.1e-11 43.2 0.0 4.9e-11 42.5 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.21 gi|48478181|ref|YP_023887.1| - 0.00021 20.7 0.0 0.00031 20.1 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.20 gi|48478181|ref|YP_023887.1| - 0.00031 19.4 0.0 0.00046 18.8 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.19 gi|48478181|ref|YP_023887.1| - 0.018 14.0 0.0 0.029 13.3 0.0 1.3 1 0 0 1 1 1 0 Aminotransferase class-V HTH_5 PF01022.20 gi|48478182|ref|YP_023888.1| - 5.4e-09 35.8 0.1 2.6e-07 30.4 0.1 3.1 3 0 0 3 3 3 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|48478182|ref|YP_023888.1| - 6e-06 25.7 2.3 5e-05 22.8 0.2 2.4 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding PadR PF03551.14 gi|48478182|ref|YP_023888.1| - 2e-05 24.5 0.2 4.1e-05 23.5 0.0 1.8 2 1 0 2 2 1 1 Transcriptional regulator PadR-like family HTH_34 PF13601.6 gi|48478182|ref|YP_023888.1| - 4.1e-05 23.7 0.1 8.8e-05 22.6 0.1 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_20 PF12840.7 gi|48478182|ref|YP_023888.1| - 0.00014 21.9 0.0 0.00032 20.7 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HxlR PF01638.17 gi|48478182|ref|YP_023888.1| - 0.00038 20.3 0.1 0.0023 17.7 0.1 2.2 1 1 1 2 2 2 1 HxlR-like helix-turn-helix TrmB PF01978.19 gi|48478182|ref|YP_023888.1| - 0.0006 19.6 0.1 0.0014 18.5 0.1 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB TFIIE_alpha PF02002.17 gi|48478182|ref|YP_023888.1| - 0.00072 19.4 0.6 0.0014 18.5 0.5 1.6 1 1 0 1 1 1 1 TFIIE alpha subunit HTH_11 PF08279.12 gi|48478182|ref|YP_023888.1| - 0.00089 19.2 0.2 0.0028 17.5 0.1 2.0 2 0 0 2 2 2 1 HTH domain Rrf2 PF02082.20 gi|48478182|ref|YP_023888.1| - 0.0032 17.8 0.0 0.2 12.1 0.0 2.2 2 0 0 2 2 2 1 Transcriptional regulator DUF3116 PF11313.8 gi|48478182|ref|YP_023888.1| - 0.01 15.7 0.1 0.024 14.5 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3116) MarR PF01047.22 gi|48478182|ref|YP_023888.1| - 0.012 15.5 0.0 0.03 14.3 0.0 1.6 1 0 0 1 1 1 0 MarR family ArsR PF09824.9 gi|48478182|ref|YP_023888.1| - 0.02 14.5 0.1 0.079 12.6 0.1 1.9 1 1 0 1 1 1 0 ArsR transcriptional regulator HTH_45 PF14947.6 gi|48478182|ref|YP_023888.1| - 0.021 14.8 0.3 0.021 14.8 0.3 2.1 3 0 0 3 3 3 0 Winged helix-turn-helix HTH_12 PF08461.10 gi|48478182|ref|YP_023888.1| - 0.028 14.4 0.1 0.086 12.8 0.1 2.0 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain CaMKII_AD PF08332.10 gi|48478182|ref|YP_023888.1| - 0.04 14.0 0.0 0.075 13.2 0.0 1.5 1 0 0 1 1 1 0 Calcium/calmodulin dependent protein kinase II association domain DUF2513 PF10711.9 gi|48478182|ref|YP_023888.1| - 0.057 13.7 0.0 0.14 12.5 0.0 1.6 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) UPF0122 PF04297.14 gi|48478182|ref|YP_023888.1| - 0.058 13.6 1.4 0.25 11.6 0.1 2.4 3 0 0 3 3 3 0 Putative helix-turn-helix protein, YlxM / p13 like HTH_9 PF08221.11 gi|48478182|ref|YP_023888.1| - 0.062 13.4 0.5 4.8 7.4 0.0 2.4 2 0 0 2 2 2 0 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_26 PF13443.6 gi|48478182|ref|YP_023888.1| - 0.07 13.6 0.2 0.15 12.5 0.2 1.5 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain DprA_WH PF17782.1 gi|48478182|ref|YP_023888.1| - 0.12 12.6 0.0 0.19 11.8 0.0 1.3 1 0 0 1 1 1 0 DprA winged helix domain Replic_Relax PF13814.6 gi|48478182|ref|YP_023888.1| - 0.19 11.8 0.0 0.22 11.6 0.0 1.2 1 0 0 1 1 1 0 Replication-relaxation MarR_2 PF12802.7 gi|48478182|ref|YP_023888.1| - 0.2 11.6 0.0 0.49 10.3 0.0 1.6 2 0 0 2 2 2 0 MarR family ABC_tran PF00005.27 gi|48478183|ref|YP_023889.1| - 9.8e-24 84.4 0.0 1.6e-23 83.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|48478183|ref|YP_023889.1| - 1.2e-08 35.1 0.5 0.00059 19.7 0.1 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|48478183|ref|YP_023889.1| - 2.2e-08 33.8 0.4 4.1e-05 23.1 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|48478183|ref|YP_023889.1| - 0.0029 17.3 0.1 0.0065 16.2 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|48478183|ref|YP_023889.1| - 0.0034 17.3 0.1 0.0057 16.6 0.1 1.3 1 0 0 1 1 1 1 RsgA GTPase AAA PF00004.29 gi|48478183|ref|YP_023889.1| - 0.013 15.9 0.8 0.3 11.5 0.8 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_13 PF13166.6 gi|48478183|ref|YP_023889.1| - 0.044 12.4 0.5 4 5.9 0.2 2.1 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.6 gi|48478183|ref|YP_023889.1| - 0.062 13.6 0.4 9.3 6.5 0.1 2.3 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.6 gi|48478183|ref|YP_023889.1| - 0.11 12.9 0.1 0.25 11.8 0.1 1.5 1 0 0 1 1 1 0 AAA domain AAA_27 PF13514.6 gi|48478183|ref|YP_023889.1| - 0.12 11.9 0.3 0.29 10.7 0.1 1.6 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.6 gi|48478183|ref|YP_023889.1| - 0.16 11.6 0.2 0.32 10.6 0.0 1.6 2 0 0 2 2 2 0 AAA domain UPF0051 PF01458.17 gi|48478184|ref|YP_023890.1| - 4.3e-66 222.7 0.1 5.5e-66 222.4 0.1 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) Arc_PepC PF06819.11 gi|48478184|ref|YP_023890.1| - 0.085 13.0 0.2 0.18 11.9 0.2 1.4 1 0 0 1 1 1 0 Archaeal Peptidase A24 C-terminal Domain CHIPS PF11434.8 gi|48478184|ref|YP_023890.1| - 0.15 11.9 0.3 1.5 8.7 0.0 2.4 3 0 0 3 3 3 0 Chemotaxis-inhibiting protein CHIPS UPF0051 PF01458.17 gi|48478185|ref|YP_023891.1| - 4.5e-41 140.9 1.7 6.3e-41 140.4 1.7 1.2 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) Hph PF13694.6 gi|48478185|ref|YP_023891.1| - 0.023 15.0 0.9 0.059 13.7 0.0 2.2 2 0 0 2 2 2 0 Sec63/Sec62 complex-interacting family HGTP_anticodon PF03129.20 gi|48478186|ref|YP_023892.1| - 2.1e-18 66.3 0.0 4.7e-18 65.1 0.0 1.7 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|48478186|ref|YP_023892.1| - 4e-10 40.0 0.1 3.1e-09 37.0 0.0 2.3 2 1 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) zinc_ribbon_4 PF13717.6 gi|48478186|ref|YP_023892.1| - 0.009 15.9 0.7 3.2 7.8 0.1 2.4 2 0 0 2 2 2 2 zinc-ribbon domain Imm12 PF15560.6 gi|48478186|ref|YP_023892.1| - 0.055 13.4 0.2 0.14 12.1 0.2 1.6 1 0 0 1 1 1 0 Immunity protein 12 zf-FPG_IleRS PF06827.14 gi|48478186|ref|YP_023892.1| - 0.12 12.2 0.1 0.29 11.0 0.1 1.6 1 0 0 1 1 1 0 Zinc finger found in FPG and IleRS Zn-ribbon_8 PF09723.10 gi|48478186|ref|YP_023892.1| - 0.39 10.9 1.2 8.2 6.6 1.6 2.3 1 1 1 2 2 2 0 Zinc ribbon domain CBS PF00571.28 gi|48478187|ref|YP_023893.1| - 3.8e-38 129.7 5.9 4.3e-12 46.3 0.5 4.1 4 0 0 4 4 4 4 CBS domain PRC PF05239.16 gi|48478187|ref|YP_023893.1| - 0.021 14.9 0.3 3 8.0 0.0 3.6 3 1 1 4 4 4 0 PRC-barrel domain DUF327 PF03885.13 gi|48478187|ref|YP_023893.1| - 0.11 12.5 0.1 12 5.9 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF327) 2-Hacid_dh_C PF02826.19 gi|48478188|ref|YP_023894.1| - 2e-40 138.1 0.0 2.6e-40 137.7 0.0 1.1 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|48478188|ref|YP_023894.1| - 3.4e-06 26.7 0.0 4.9e-06 26.2 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain IlvN PF07991.12 gi|48478188|ref|YP_023894.1| - 0.011 15.3 0.0 0.021 14.4 0.0 1.5 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain NAD_binding_2 PF03446.15 gi|48478188|ref|YP_023894.1| - 0.016 15.4 0.0 0.025 14.8 0.0 1.3 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase IncD PF17628.2 gi|48478189|ref|YP_023895.1| - 0.04 13.7 0.0 0.054 13.3 0.0 1.1 1 0 0 1 1 1 0 Inclusion membrane protein D FLgD_tudor PF13861.6 gi|48478189|ref|YP_023895.1| - 0.051 13.8 1.1 0.37 11.1 0.2 2.1 1 1 1 2 2 2 0 FlgD Tudor-like domain PsbI PF02532.14 gi|48478189|ref|YP_023895.1| - 0.14 12.1 0.9 0.33 10.9 0.9 1.6 1 0 0 1 1 1 0 Photosystem II reaction centre I protein (PSII 4.8 kDa protein) Lactamase_B_3 PF13483.6 gi|48478190|ref|YP_023896.1| - 4.3e-27 95.0 0.1 5.5e-27 94.7 0.1 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|48478190|ref|YP_023896.1| - 4.3e-21 75.4 0.1 5.8e-21 74.9 0.1 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|48478190|ref|YP_023896.1| - 6.5e-10 39.3 0.3 1.3e-09 38.3 0.3 1.6 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily FAD_binding_5 PF00941.21 gi|48478191|ref|YP_023897.1| - 1.6e-45 154.9 0.0 2.5e-45 154.3 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain in molybdopterin dehydrogenase CO_deh_flav_C PF03450.17 gi|48478191|ref|YP_023897.1| - 2.1e-15 56.8 0.0 4e-15 55.8 0.0 1.5 1 0 0 1 1 1 1 CO dehydrogenase flavoprotein C-terminal domain LPD7 PF18821.1 gi|48478191|ref|YP_023897.1| - 0.042 14.0 0.0 0.084 13.0 0.0 1.5 1 0 0 1 1 1 0 Large polyvalent protein-associated domain 7 Fer2_2 PF01799.20 gi|48478192|ref|YP_023898.1| - 6.9e-23 80.5 1.7 1.1e-22 79.8 0.0 1.9 1 1 1 2 2 2 1 [2Fe-2S] binding domain Fer2 PF00111.27 gi|48478192|ref|YP_023898.1| - 0.00048 20.0 0.4 0.00048 20.0 0.4 2.1 1 1 1 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer2_3 PF13085.6 gi|48478192|ref|YP_023898.1| - 0.002 18.1 0.6 0.0038 17.2 0.6 1.5 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Ald_Xan_dh_C2 PF02738.18 gi|48478193|ref|YP_023899.1| - 5.7e-109 365.0 0.0 4.9e-92 309.2 0.0 2.0 1 1 0 2 2 2 2 Molybdopterin-binding domain of aldehyde dehydrogenase Ald_Xan_dh_C PF01315.22 gi|48478193|ref|YP_023899.1| - 1.8e-15 57.2 0.0 4.1e-15 56.1 0.0 1.7 1 0 0 1 1 1 1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain YadA_anchor PF03895.15 gi|48478193|ref|YP_023899.1| - 0.04 14.0 0.3 0.12 12.4 0.3 1.9 1 0 0 1 1 1 0 YadA-like membrane anchor domain Lactamase_B PF00753.27 gi|48478194|ref|YP_023900.1| - 5.8e-21 75.4 0.0 1.9e-20 73.8 0.0 1.7 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|48478194|ref|YP_023900.1| - 1.2e-05 24.9 0.0 2.6e-05 23.9 0.0 1.5 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 gi|48478194|ref|YP_023900.1| - 0.0045 16.5 0.2 0.012 15.0 0.1 1.7 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily domain SfsA PF03749.13 gi|48478195|ref|YP_023901.1| - 8e-33 113.3 0.0 1.2e-32 112.7 0.0 1.3 1 0 0 1 1 1 1 Sugar fermentation stimulation protein RE domain SfsA_N PF17746.1 gi|48478195|ref|YP_023901.1| - 3e-12 46.5 0.1 5.2e-12 45.7 0.1 1.4 1 0 0 1 1 1 1 SfsA N-terminal OB domain Lactamase_B PF00753.27 gi|48478196|ref|YP_023902.1| - 1.1e-11 45.1 0.3 2e-11 44.3 0.3 1.4 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|48478196|ref|YP_023902.1| - 0.0007 19.2 0.2 0.0044 16.6 0.2 2.0 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|48478196|ref|YP_023902.1| - 0.033 14.1 0.0 0.046 13.6 0.0 1.2 1 0 0 1 1 1 0 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 gi|48478196|ref|YP_023902.1| - 0.035 13.5 0.1 0.066 12.6 0.1 1.5 1 1 0 1 1 1 0 Metallo-beta-lactamase superfamily domain Tail_tube PF10618.9 gi|48478197|ref|YP_023903.1| - 0.011 15.6 0.0 0.015 15.1 0.0 1.2 1 0 0 1 1 1 0 Phage tail tube protein MFS_1 PF07690.16 gi|48478198|ref|YP_023904.1| - 1.5e-40 139.2 37.3 1.4e-27 96.6 15.4 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|48478198|ref|YP_023904.1| - 5.3e-28 98.1 31.5 1.6e-26 93.2 31.5 3.2 1 1 0 1 1 1 1 Sugar (and other) transporter DLH PF01738.18 gi|48478200|ref|YP_023906.1| - 3.2e-50 170.7 0.0 4.1e-50 170.3 0.0 1.1 1 0 0 1 1 1 1 Dienelactone hydrolase family BAAT_C PF08840.11 gi|48478200|ref|YP_023906.1| - 0.0061 16.5 1.8 1.6 8.6 0.1 2.7 1 1 2 3 3 3 2 BAAT / Acyl-CoA thioester hydrolase C terminal Hydrolase_4 PF12146.8 gi|48478200|ref|YP_023906.1| - 0.096 11.9 0.0 1.1 8.5 0.0 2.0 2 0 0 2 2 2 0 Serine aminopeptidase, S33 HPP PF04982.13 gi|48478201|ref|YP_023907.1| - 7.9e-14 51.9 0.3 7.9e-14 51.9 0.3 1.5 2 0 0 2 2 2 1 HPP family Cytomega_gL PF01801.16 gi|48478202|ref|YP_023908.1| - 0.0073 15.7 0.1 0.0085 15.5 0.1 1.0 1 0 0 1 1 1 1 Cytomegalovirus glycoprotein L TatC PF00902.18 gi|48478203|ref|YP_023909.1| - 4.8e-49 167.0 20.6 5.7e-49 166.8 20.6 1.1 1 0 0 1 1 1 1 Sec-independent protein translocase protein (TatC) MttA_Hcf106 PF02416.16 gi|48478204|ref|YP_023910.1| - 1.9e-14 52.7 0.0 2e-14 52.7 0.0 1.1 1 0 0 1 1 1 1 mttA/Hcf106 family Rieske PF00355.26 gi|48478205|ref|YP_023911.1| - 7.4e-07 29.0 0.0 1.6e-06 27.9 0.0 1.6 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Cytochrom_B_N_2 PF13631.6 gi|48478206|ref|YP_023912.1| - 2.6e-43 147.9 19.1 2.6e-43 147.9 19.1 2.8 3 1 0 3 3 3 1 Cytochrome b(N-terminal)/b6/petB Cytochrome_B PF00033.19 gi|48478206|ref|YP_023912.1| - 1.5e-14 54.3 23.5 1.5e-14 54.3 23.5 2.9 2 1 0 2 2 2 1 Cytochrome b/b6/petB Cytochrom_B_C PF00032.17 gi|48478206|ref|YP_023912.1| - 8.8e-07 29.2 1.5 8.8e-07 29.2 1.5 4.0 1 1 3 4 4 4 1 Cytochrome b(C-terminal)/b6/petD DUF4079 PF13301.6 gi|48478206|ref|YP_023912.1| - 2.3e-05 24.6 1.1 2.3e-05 24.6 1.1 2.9 3 1 0 3 3 3 1 Protein of unknown function (DUF4079) UL45 PF05473.12 gi|48478206|ref|YP_023912.1| - 0.024 14.3 4.0 0.089 12.4 0.0 2.3 2 0 0 2 2 2 0 UL45 protein, carbohydrate-binding C-type lectin-like RseC_MucC PF04246.12 gi|48478207|ref|YP_023913.1| - 0.14 12.1 1.4 0.15 12.0 1.4 1.0 1 0 0 1 1 1 0 Positive regulator of sigma(E), RseC/MucC UCR_Fe-S_N PF10399.9 gi|48478208|ref|YP_023914.1| - 0.44 9.9 6.8 0.84 9.0 6.8 1.5 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal PalH PF08733.10 gi|48478208|ref|YP_023914.1| - 3.1 6.7 8.8 3.8 6.4 8.8 1.1 1 0 0 1 1 1 0 PalH/RIM21 SUR7 PF06687.12 gi|48478208|ref|YP_023914.1| - 4.5 6.8 11.8 25 4.4 11.8 1.9 1 1 0 1 1 1 0 SUR7/PalI family SdpI PF13630.6 gi|48478209|ref|YP_023915.1| - 0.0042 17.2 0.1 0.0066 16.5 0.1 1.3 1 1 0 1 1 1 1 SdpI/YhfL protein family DUF2208 PF09973.9 gi|48478209|ref|YP_023915.1| - 0.019 14.6 1.6 0.023 14.3 1.6 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2208) Pox_A14 PF05767.12 gi|48478209|ref|YP_023915.1| - 0.15 12.2 2.6 0.42 10.8 2.6 1.7 1 1 0 1 1 1 0 Poxvirus virion envelope protein A14 DUF973 PF06157.11 gi|48478209|ref|YP_023915.1| - 0.15 11.1 5.0 0.57 9.2 0.2 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF973) DUF3784 PF12650.7 gi|48478209|ref|YP_023915.1| - 0.24 11.6 5.9 0.6 10.3 5.9 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF3784) DUF202 PF02656.15 gi|48478209|ref|YP_023915.1| - 0.26 11.7 2.3 1.1 9.7 2.3 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF202) Claudin_2 PF13903.6 gi|48478209|ref|YP_023915.1| - 0.71 9.6 3.5 4.9 6.9 0.0 2.0 1 1 1 2 2 2 0 PMP-22/EMP/MP20/Claudin tight junction SIS PF01380.22 gi|48478210|ref|YP_023916.1| - 1.7e-20 73.2 0.5 3.8e-12 46.2 0.1 2.3 2 1 0 2 2 2 2 SIS domain bact-PGI_C PF10432.9 gi|48478210|ref|YP_023916.1| - 0.009 16.1 0.1 0.009 16.1 0.1 1.8 2 1 0 2 2 2 1 Bacterial phospho-glucose isomerase C-terminal SIS domain SIS_2 PF13580.6 gi|48478210|ref|YP_023916.1| - 0.0096 15.9 0.2 5.8 6.9 0.1 3.0 2 1 1 3 3 3 2 SIS domain DUF4133 PF13571.6 gi|48478211|ref|YP_023917.1| - 0.084 13.2 2.6 0.16 12.3 2.6 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4133) Flavoprotein PF02441.19 gi|48478212|ref|YP_023918.1| - 1.2e-32 112.9 0.4 1.8e-32 112.3 0.1 1.5 2 0 0 2 2 2 1 Flavoprotein DFP PF04127.15 gi|48478212|ref|YP_023918.1| - 6.5e-28 97.8 0.0 1.7e-27 96.4 0.0 1.7 2 0 0 2 2 2 1 DNA / pantothenate metabolism flavoprotein Abhydrolase_1 PF00561.20 gi|48478213|ref|YP_023919.1| - 5.8e-21 75.3 0.3 1.2e-13 51.3 0.1 2.0 1 1 1 2 2 2 2 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|48478213|ref|YP_023919.1| - 9.8e-16 59.0 0.0 1.1e-13 52.4 0.0 2.0 1 1 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 gi|48478213|ref|YP_023919.1| - 1.7e-07 30.8 0.0 5.1e-07 29.2 0.0 1.7 1 1 1 2 2 2 1 Serine aminopeptidase, S33 Abhydrolase_2 PF02230.16 gi|48478213|ref|YP_023919.1| - 8.4e-07 29.0 0.2 0.097 12.5 0.0 3.1 1 1 2 3 3 3 3 Phospholipase/Carboxylesterase Thioesterase PF00975.20 gi|48478213|ref|YP_023919.1| - 0.00033 20.8 0.0 0.0014 18.8 0.0 1.8 2 0 0 2 2 2 1 Thioesterase domain Abhydrolase_5 PF12695.7 gi|48478213|ref|YP_023919.1| - 0.00049 19.9 0.1 0.3 10.8 0.0 2.2 2 0 0 2 2 2 2 Alpha/beta hydrolase family FBA_2 PF07735.17 gi|48478213|ref|YP_023919.1| - 0.0035 17.4 0.7 0.036 14.2 0.1 2.3 2 0 0 2 2 2 1 F-box associated Ndr PF03096.14 gi|48478213|ref|YP_023919.1| - 0.03 13.0 0.1 0.2 10.4 0.1 1.9 1 1 1 2 2 2 0 Ndr family BAAT_C PF08840.11 gi|48478213|ref|YP_023919.1| - 0.04 13.8 0.0 0.052 13.5 0.0 1.1 1 0 0 1 1 1 0 BAAT / Acyl-CoA thioester hydrolase C terminal TPR_12 PF13424.6 gi|48478214|ref|YP_023920.1| - 1.7e-05 25.0 10.6 0.0017 18.6 0.7 4.5 4 1 1 5 5 5 2 Tetratricopeptide repeat SHNi-TPR PF10516.9 gi|48478214|ref|YP_023920.1| - 0.0003 20.2 0.2 3.7 7.1 0.0 4.3 4 0 0 4 4 4 1 SHNi-TPR TPR_MalT PF17874.1 gi|48478214|ref|YP_023920.1| - 0.00054 19.4 0.1 0.0065 15.9 0.0 2.2 1 1 1 2 2 2 1 MalT-like TPR region TPR_11 PF13414.6 gi|48478214|ref|YP_023920.1| - 0.015 15.0 4.9 0.14 11.8 0.4 3.8 3 1 0 3 3 3 0 TPR repeat TPR_10 PF13374.6 gi|48478214|ref|YP_023920.1| - 0.034 14.0 7.9 14 5.7 0.1 4.4 4 0 0 4 4 4 0 Tetratricopeptide repeat ELYS PF13934.6 gi|48478214|ref|YP_023920.1| - 0.057 13.4 0.2 0.095 12.7 0.2 1.5 1 1 0 1 1 1 0 Nuclear pore complex assembly TPR_2 PF07719.17 gi|48478214|ref|YP_023920.1| - 0.11 12.7 22.8 5.9 7.3 0.9 6.6 6 2 0 6 6 6 0 Tetratricopeptide repeat YcaO_C PF18381.1 gi|48478214|ref|YP_023920.1| - 0.11 12.4 8.5 0.34 10.8 0.8 2.5 1 1 1 2 2 2 0 YcaO cyclodehydratase C-terminal domain DUF2119 PF09892.9 gi|48478214|ref|YP_023920.1| - 0.23 10.8 8.4 0.25 10.7 1.7 3.1 1 1 2 3 3 3 0 Uncharacterized protein conserved in archaea (DUF2119) DUF2408 PF10303.9 gi|48478214|ref|YP_023920.1| - 0.61 10.6 4.8 1.1 9.9 4.4 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF2408) LMBR1 PF04791.16 gi|48478214|ref|YP_023920.1| - 1.1 8.0 4.6 1.2 7.9 4.6 1.1 1 0 0 1 1 1 0 LMBR1-like membrane protein DASH_Dad4 PF08650.10 gi|48478214|ref|YP_023920.1| - 3.6 7.6 9.8 4.3 7.4 1.5 2.9 3 1 0 3 3 3 0 DASH complex subunit Dad4 TPR_7 PF13176.6 gi|48478214|ref|YP_023920.1| - 6.8 7.0 9.4 2.3 8.4 0.1 4.4 6 1 0 6 6 5 0 Tetratricopeptide repeat HMG-CoA_red PF00368.18 gi|48478215|ref|YP_023921.1| - 4.1e-107 358.4 1.1 4.9e-107 358.1 1.1 1.1 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A reductase MFS_1 PF07690.16 gi|48478216|ref|YP_023922.1| - 1.9e-29 102.7 54.4 6.2e-20 71.4 31.8 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_3 PF05977.13 gi|48478216|ref|YP_023922.1| - 3e-07 29.2 4.8 3e-07 29.2 4.8 1.9 2 0 0 2 2 2 1 Transmembrane secretion effector MFS_1 PF07690.16 gi|48478217|ref|YP_023923.1| - 3.1e-17 62.5 64.7 2.2e-15 56.4 40.5 1.8 1 1 1 2 2 2 2 Major Facilitator Superfamily SNARE_assoc PF09335.11 gi|48478218|ref|YP_023924.1| - 8.4e-20 71.5 3.9 8.4e-20 71.5 3.9 2.0 2 0 0 2 2 2 1 SNARE associated Golgi protein NAD_binding_2 PF03446.15 gi|48478219|ref|YP_023925.1| - 2.3e-20 73.3 0.0 3.7e-20 72.7 0.0 1.3 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_11 PF14833.6 gi|48478219|ref|YP_023925.1| - 3.9e-09 36.8 0.1 6.1e-09 36.2 0.1 1.2 1 0 0 1 1 1 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 3HCDH_N PF02737.18 gi|48478219|ref|YP_023925.1| - 3.8e-06 26.9 0.8 5.7e-05 23.1 0.1 2.5 2 1 1 3 3 3 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DapB_N PF01113.20 gi|48478219|ref|YP_023925.1| - 0.0013 18.9 0.0 0.0088 16.2 0.0 2.2 1 1 1 2 2 2 1 Dihydrodipicolinate reductase, N-terminus 2-Hacid_dh_C PF02826.19 gi|48478219|ref|YP_023925.1| - 0.0056 16.1 0.0 0.0095 15.3 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|48478219|ref|YP_023925.1| - 0.022 15.3 0.0 0.071 13.7 0.0 1.9 2 1 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent ApbA PF02558.16 gi|48478219|ref|YP_023925.1| - 0.045 13.4 0.2 0.35 10.5 0.1 2.0 1 1 1 2 2 2 0 Ketopantoate reductase PanE/ApbA TrkA_N PF02254.18 gi|48478219|ref|YP_023925.1| - 0.078 13.2 0.5 2.6 8.3 0.0 2.7 3 0 0 3 3 3 0 TrkA-N domain DUF2520 PF10728.9 gi|48478219|ref|YP_023925.1| - 0.1 12.4 0.0 0.2 11.4 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF2520) UDPG_MGDP_dh PF00984.19 gi|48478219|ref|YP_023925.1| - 0.34 11.1 2.7 0.73 10.1 0.1 2.8 4 0 0 4 4 4 0 UDP-glucose/GDP-mannose dehydrogenase family, central domain Fe_dep_repr_C PF02742.15 gi|48478220|ref|YP_023926.1| - 2.3e-19 69.2 0.0 5e-19 68.2 0.0 1.6 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain Fe_dep_repress PF01325.19 gi|48478220|ref|YP_023926.1| - 2.4e-12 46.9 0.0 1.4e-11 44.4 0.0 2.1 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_5 PF01022.20 gi|48478220|ref|YP_023926.1| - 1.7e-05 24.6 0.0 3.2e-05 23.7 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|48478220|ref|YP_023926.1| - 2.2e-05 24.2 0.0 4.3e-05 23.3 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_45 PF14947.6 gi|48478220|ref|YP_023926.1| - 2.6e-05 24.1 0.1 5.9e-05 23.0 0.1 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_Crp_2 PF13545.6 gi|48478220|ref|YP_023926.1| - 0.00039 20.4 0.1 0.00076 19.4 0.1 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain MarR PF01047.22 gi|48478220|ref|YP_023926.1| - 0.0012 18.7 0.0 0.0027 17.6 0.0 1.6 1 0 0 1 1 1 1 MarR family DUF2250 PF10007.9 gi|48478220|ref|YP_023926.1| - 0.0019 18.2 0.0 0.004 17.2 0.0 1.5 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_24 PF13412.6 gi|48478220|ref|YP_023926.1| - 0.0022 17.5 0.0 0.0038 16.8 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_36 PF13730.6 gi|48478220|ref|YP_023926.1| - 0.011 15.6 0.0 0.025 14.5 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_27 PF13463.6 gi|48478220|ref|YP_023926.1| - 0.012 16.1 0.0 0.03 14.8 0.0 1.7 1 0 0 1 1 1 0 Winged helix DNA-binding domain Ribosomal_S25 PF03297.15 gi|48478220|ref|YP_023926.1| - 0.021 15.0 0.0 0.041 14.1 0.0 1.4 1 0 0 1 1 1 0 S25 ribosomal protein FeoA PF04023.14 gi|48478220|ref|YP_023926.1| - 0.022 15.0 0.0 0.042 14.1 0.0 1.4 1 0 0 1 1 1 0 FeoA domain HTH_11 PF08279.12 gi|48478220|ref|YP_023926.1| - 0.022 14.7 0.2 1.6 8.7 0.0 2.3 2 0 0 2 2 2 0 HTH domain DUF4941 PF16299.5 gi|48478220|ref|YP_023926.1| - 0.03 13.7 0.3 0.054 12.8 0.3 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4941) TFA2_Winged_2 PF18121.1 gi|48478220|ref|YP_023926.1| - 0.036 13.7 0.0 0.13 12.0 0.0 1.9 2 0 0 2 2 2 0 TFA2 Winged helix domain 2 Ribosomal_L27 PF01016.19 gi|48478220|ref|YP_023926.1| - 0.048 13.7 0.0 0.19 11.8 0.0 1.8 1 1 1 2 2 2 0 Ribosomal L27 protein MarR_2 PF12802.7 gi|48478220|ref|YP_023926.1| - 0.05 13.5 0.0 0.095 12.6 0.0 1.4 1 0 0 1 1 1 0 MarR family HTH_IclR PF09339.10 gi|48478220|ref|YP_023926.1| - 0.053 13.3 0.0 0.091 12.6 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain Rrf2 PF02082.20 gi|48478220|ref|YP_023926.1| - 0.083 13.3 0.0 0.25 11.7 0.0 1.8 2 0 0 2 2 1 0 Transcriptional regulator HTH_29 PF13551.6 gi|48478220|ref|YP_023926.1| - 0.19 11.8 0.0 0.37 10.9 0.0 1.5 1 1 0 1 1 1 0 Winged helix-turn helix Pirin PF02678.16 gi|48478221|ref|YP_023927.1| - 1.4e-35 121.5 0.4 3.5e-35 120.2 0.1 1.7 2 0 0 2 2 2 1 Pirin Pirin_C PF05726.13 gi|48478221|ref|YP_023927.1| - 1.7e-21 76.5 0.0 2.7e-20 72.7 0.0 2.2 2 0 0 2 2 2 1 Pirin C-terminal cupin domain Cupin_2 PF07883.11 gi|48478221|ref|YP_023927.1| - 0.0015 18.2 1.1 0.0081 15.9 0.6 2.2 2 0 0 2 2 2 1 Cupin domain Cupin_3 PF05899.12 gi|48478221|ref|YP_023927.1| - 0.016 14.9 0.1 0.056 13.2 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF861) DUF1107 PF06526.12 gi|48478221|ref|YP_023927.1| - 0.029 14.3 0.1 0.16 11.9 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1107) HxlR PF01638.17 gi|48478222|ref|YP_023928.1| - 2.6e-24 84.9 0.0 3e-24 84.7 0.0 1.0 1 0 0 1 1 1 1 HxlR-like helix-turn-helix PadR PF03551.14 gi|48478222|ref|YP_023928.1| - 0.0049 16.8 0.0 0.0069 16.3 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family DUF2513 PF10711.9 gi|48478222|ref|YP_023928.1| - 0.035 14.4 0.0 0.042 14.1 0.0 1.1 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) HTH_34 PF13601.6 gi|48478222|ref|YP_023928.1| - 0.041 14.1 0.0 0.052 13.7 0.0 1.1 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_5 PF01022.20 gi|48478222|ref|YP_023928.1| - 0.043 13.7 0.1 0.068 13.0 0.1 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_45 PF14947.6 gi|48478222|ref|YP_023928.1| - 0.1 12.6 0.1 0.17 11.9 0.1 1.5 1 1 0 1 1 1 0 Winged helix-turn-helix ADH_N PF08240.12 gi|48478223|ref|YP_023929.1| - 2.2e-27 95.1 0.2 4e-27 94.3 0.2 1.4 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|48478223|ref|YP_023929.1| - 4.2e-23 81.7 0.1 6.2e-23 81.2 0.1 1.2 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 gi|48478223|ref|YP_023929.1| - 7.6e-11 43.2 0.0 1.2e-10 42.6 0.0 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase AlaDh_PNT_C PF01262.21 gi|48478223|ref|YP_023929.1| - 0.0018 17.6 0.3 0.0029 16.9 0.3 1.4 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain TrkA_N PF02254.18 gi|48478223|ref|YP_023929.1| - 0.024 14.9 0.1 0.041 14.1 0.1 1.4 1 0 0 1 1 1 0 TrkA-N domain adh_short PF00106.25 gi|48478223|ref|YP_023929.1| - 0.04 13.4 1.9 0.16 11.4 0.6 2.3 2 0 0 2 2 2 0 short chain dehydrogenase Nrap_D4 PF17405.2 gi|48478223|ref|YP_023929.1| - 0.043 13.2 0.0 0.067 12.5 0.0 1.3 1 0 0 1 1 1 0 Nrap protein nucleotidyltransferase domain 4 PALP PF00291.25 gi|48478223|ref|YP_023929.1| - 0.066 12.6 0.4 0.097 12.1 0.4 1.2 1 0 0 1 1 1 0 Pyridoxal-phosphate dependent enzyme ACP_syn_III_C PF08541.10 gi|48478223|ref|YP_023929.1| - 0.067 13.4 0.1 0.15 12.3 0.1 1.6 1 0 0 1 1 1 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal LDcluster4 PF18306.1 gi|48478223|ref|YP_023929.1| - 0.067 12.8 3.5 0.11 12.1 3.5 1.4 1 0 0 1 1 1 0 SLOG cluster4 family 2-Hacid_dh_C PF02826.19 gi|48478223|ref|YP_023929.1| - 0.19 11.1 0.5 0.31 10.4 0.5 1.2 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Aldo_ket_red PF00248.21 gi|48478224|ref|YP_023930.1| - 1.4e-60 205.0 0.1 1.6e-60 204.8 0.1 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family PA28_beta PF02252.18 gi|48478224|ref|YP_023930.1| - 0.0059 16.3 0.2 2.7 7.6 0.0 2.6 2 0 0 2 2 2 2 Proteasome activator pa28 beta subunit Stork_head PF10264.9 gi|48478224|ref|YP_023930.1| - 0.015 15.4 0.0 0.053 13.7 0.0 1.9 2 0 0 2 2 2 0 Winged helix Storkhead-box1 domain Sugar_tr PF00083.24 gi|48478225|ref|YP_023931.1| - 8e-40 137.1 20.8 1e-39 136.7 20.8 1.0 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.16 gi|48478225|ref|YP_023931.1| - 3.3e-28 98.6 31.8 3.3e-28 98.6 31.8 1.9 1 1 1 2 2 2 1 Major Facilitator Superfamily DUF296 PF03479.15 gi|48478225|ref|YP_023931.1| - 0.041 14.3 0.0 0.11 12.9 0.0 1.7 1 0 0 1 1 1 0 Plants and Prokaryotes Conserved (PCC) domain Fibrillarin PF01269.17 gi|48478225|ref|YP_023931.1| - 0.12 11.4 0.0 0.18 10.9 0.0 1.3 1 0 0 1 1 1 0 Fibrillarin DUF502 PF04367.13 gi|48478225|ref|YP_023931.1| - 0.85 9.5 4.2 11 6.0 0.5 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF502) CN_hydrolase PF00795.22 gi|48478226|ref|YP_023932.1| - 7.7e-17 61.5 0.0 9.7e-17 61.2 0.0 1.2 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase IMS PF00817.20 gi|48478227|ref|YP_023933.1| - 7.8e-43 146.0 0.1 1.4e-42 145.2 0.1 1.4 1 0 0 1 1 1 1 impB/mucB/samB family IMS_HHH PF11798.8 gi|48478227|ref|YP_023933.1| - 2e-06 27.8 0.2 8e-06 25.9 0.1 2.2 2 0 0 2 2 2 1 IMS family HHH motif IMS_C PF11799.8 gi|48478227|ref|YP_023933.1| - 0.00074 20.2 0.1 0.011 16.4 0.3 2.5 2 1 0 2 2 2 1 impB/mucB/samB family C-terminal domain DUF1805 PF08827.11 gi|48478227|ref|YP_023933.1| - 0.0028 17.9 0.0 0.017 15.4 0.0 2.3 2 0 0 2 2 2 1 Domain of unknown function (DUF1805) HHH_5 PF14520.6 gi|48478227|ref|YP_023933.1| - 0.0033 18.0 0.1 0.012 16.2 0.1 1.9 1 0 0 1 1 1 1 Helix-hairpin-helix domain Cdd1 PF11731.8 gi|48478227|ref|YP_023933.1| - 0.0037 17.5 0.0 0.0081 16.4 0.0 1.5 1 0 0 1 1 1 1 Pathogenicity locus BAF PF02961.14 gi|48478227|ref|YP_023933.1| - 0.056 13.9 0.0 0.31 11.5 0.0 2.1 2 0 0 2 2 2 0 Barrier to autointegration factor Voltage_CLC PF00654.20 gi|48478228|ref|YP_023934.1| - 1.7e-88 297.2 38.5 3.5e-88 296.2 31.4 2.0 2 0 0 2 2 2 2 Voltage gated chloride channel CBS PF00571.28 gi|48478228|ref|YP_023934.1| - 6.1e-09 36.2 0.0 0.00024 21.5 0.0 3.0 3 0 0 3 3 3 2 CBS domain SpoIIM PF01944.17 gi|48478229|ref|YP_023935.1| - 1.9e-14 54.0 14.8 3.4e-14 53.2 14.8 1.3 1 0 0 1 1 1 1 Stage II sporulation protein M NIR_SIR_ferr PF03460.17 gi|48478230|ref|YP_023936.1| - 0.022 14.6 0.0 0.028 14.3 0.0 1.4 1 1 0 1 1 1 0 Nitrite/Sulfite reductase ferredoxin-like half domain Aldo_ket_red PF00248.21 gi|48478231|ref|YP_023937.1| - 6e-64 216.1 0.2 6.8e-64 215.9 0.2 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family DUF302 PF03625.14 gi|48478232|ref|YP_023938.1| - 2.3e-16 59.4 0.2 3.5e-16 58.9 0.2 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF302 KH_1 PF00013.29 gi|48478233|ref|YP_023939.1| - 6.5e-08 32.3 0.3 2.9e-07 30.2 0.3 2.2 1 0 0 1 1 1 1 KH domain T2SSE PF00437.20 gi|48478233|ref|YP_023939.1| - 5e-07 29.0 0.0 1.1e-06 27.9 0.0 1.6 1 0 0 1 1 1 1 Type II/IV secretion system protein KH_2 PF07650.17 gi|48478233|ref|YP_023939.1| - 5e-05 23.0 0.7 0.00025 20.8 0.7 2.3 1 1 0 1 1 1 1 KH domain AAA_25 PF13481.6 gi|48478233|ref|YP_023939.1| - 0.00032 20.4 0.0 0.00065 19.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain DUF3107 PF11305.8 gi|48478233|ref|YP_023939.1| - 0.00041 20.6 0.4 0.72 10.2 0.0 3.2 2 0 0 2 2 2 1 Protein of unknown function (DUF3107) AAA_16 PF13191.6 gi|48478233|ref|YP_023939.1| - 0.00049 20.5 0.0 0.0011 19.4 0.0 1.6 1 0 0 1 1 1 1 AAA ATPase domain KH_4 PF13083.6 gi|48478233|ref|YP_023939.1| - 0.002 17.9 0.1 0.0093 15.8 0.1 2.2 1 0 0 1 1 1 1 KH domain ABC_tran PF00005.27 gi|48478233|ref|YP_023939.1| - 0.0028 18.2 0.2 0.015 15.8 0.0 2.1 2 0 0 2 2 2 1 ABC transporter MeaB PF03308.16 gi|48478233|ref|YP_023939.1| - 0.0035 16.4 0.0 0.0062 15.5 0.0 1.3 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_18 PF13238.6 gi|48478233|ref|YP_023939.1| - 0.0043 17.6 1.4 0.033 14.7 0.0 3.0 3 1 1 4 4 4 1 AAA domain AAA_29 PF13555.6 gi|48478233|ref|YP_023939.1| - 0.0087 15.8 0.0 0.026 14.3 0.0 1.7 2 0 0 2 2 1 1 P-loop containing region of AAA domain AAA_30 PF13604.6 gi|48478233|ref|YP_023939.1| - 0.014 15.2 0.2 0.043 13.5 0.1 1.9 2 0 0 2 2 2 0 AAA domain Thymidylate_kin PF02223.17 gi|48478233|ref|YP_023939.1| - 0.015 15.0 0.0 0.03 14.0 0.0 1.5 1 0 0 1 1 1 0 Thymidylate kinase MMR_HSR1 PF01926.23 gi|48478233|ref|YP_023939.1| - 0.026 14.6 0.1 0.23 11.5 0.0 2.5 2 0 0 2 2 2 0 50S ribosome-binding GTPase DUF815 PF05673.13 gi|48478233|ref|YP_023939.1| - 0.028 13.6 0.0 0.064 12.4 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_14 PF13173.6 gi|48478233|ref|YP_023939.1| - 0.029 14.4 3.6 0.46 10.5 0.0 3.4 3 1 1 4 4 4 0 AAA domain FtsK_SpoIIIE PF01580.18 gi|48478233|ref|YP_023939.1| - 0.035 13.4 0.0 0.11 11.8 0.0 1.8 2 0 0 2 2 2 0 FtsK/SpoIIIE family ATP_bind_1 PF03029.17 gi|48478233|ref|YP_023939.1| - 0.038 13.8 0.7 0.07 12.9 0.1 1.8 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA_23 PF13476.6 gi|48478233|ref|YP_023939.1| - 0.041 14.4 0.5 6.9 7.1 0.0 2.7 2 0 0 2 2 2 0 AAA domain Viral_helicase1 PF01443.18 gi|48478233|ref|YP_023939.1| - 0.045 13.5 0.0 0.11 12.3 0.0 1.6 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase AAA_28 PF13521.6 gi|48478233|ref|YP_023939.1| - 0.054 13.8 0.1 0.11 12.7 0.1 1.5 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|48478233|ref|YP_023939.1| - 0.061 12.6 0.0 0.14 11.4 0.0 1.6 1 0 0 1 1 1 0 Zeta toxin AAA_22 PF13401.6 gi|48478233|ref|YP_023939.1| - 0.068 13.5 0.3 0.34 11.2 0.0 2.3 3 0 0 3 3 3 0 AAA domain AAA_33 PF13671.6 gi|48478233|ref|YP_023939.1| - 0.091 12.9 0.2 0.39 10.9 0.1 2.0 2 0 0 2 2 2 0 AAA domain IstB_IS21 PF01695.17 gi|48478233|ref|YP_023939.1| - 0.15 11.8 0.0 0.33 10.7 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein Nramp PF01566.18 gi|48478234|ref|YP_023940.1| - 9.1e-43 146.6 23.1 1.3e-42 146.1 23.1 1.2 1 0 0 1 1 1 1 Natural resistance-associated macrophage protein Prominin PF05478.11 gi|48478234|ref|YP_023940.1| - 6.9 4.5 7.4 11 3.8 7.4 1.3 1 0 0 1 1 1 0 Prominin DUF1610 PF07754.11 gi|48478235|ref|YP_023941.1| - 2.1e-14 53.1 15.1 2.3e-11 43.4 6.7 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF1610) zf-ribbon_3 PF13248.6 gi|48478235|ref|YP_023941.1| - 0.0047 16.3 16.6 4.3 6.9 0.1 3.5 2 1 0 2 2 2 1 zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|48478235|ref|YP_023941.1| - 0.0057 16.6 4.1 0.0057 16.6 4.1 2.0 1 1 1 2 2 2 2 Putative transposase DNA-binding domain DZR PF12773.7 gi|48478235|ref|YP_023941.1| - 0.01 15.8 13.2 0.57 10.3 13.3 2.4 1 1 0 1 1 1 0 Double zinc ribbon C1_1 PF00130.22 gi|48478235|ref|YP_023941.1| - 0.039 13.8 0.7 0.039 13.8 0.7 2.2 1 1 1 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf_C2H2_10 PF18414.1 gi|48478235|ref|YP_023941.1| - 0.049 13.2 7.7 0.45 10.1 1.3 2.7 2 1 1 3 3 3 0 C2H2 type zinc-finger zf-CHY PF05495.12 gi|48478235|ref|YP_023941.1| - 0.049 14.1 9.9 0.29 11.6 7.4 2.1 1 1 1 2 2 2 0 CHY zinc finger zinc_ribbon_10 PF10058.9 gi|48478235|ref|YP_023941.1| - 0.053 13.3 13.6 2.1 8.1 1.3 3.4 1 1 1 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein zinc_ribbon_2 PF13240.6 gi|48478235|ref|YP_023941.1| - 0.065 13.0 19.3 0.2 11.4 4.1 3.5 2 2 0 2 2 2 0 zinc-ribbon domain HypA PF01155.19 gi|48478235|ref|YP_023941.1| - 0.067 13.2 9.7 1 9.4 0.2 2.0 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA PolC_DP2 PF03833.13 gi|48478235|ref|YP_023941.1| - 0.067 11.1 5.0 0.07 11.0 5.0 1.0 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 Rubredoxin_2 PF18073.1 gi|48478235|ref|YP_023941.1| - 0.069 12.9 18.1 1.3 8.8 0.1 3.9 3 1 0 3 3 3 0 Rubredoxin metal binding domain DUF1272 PF06906.11 gi|48478235|ref|YP_023941.1| - 0.13 12.3 1.8 0.13 12.3 1.8 2.9 1 1 1 2 2 2 0 Protein of unknown function (DUF1272) PknG_rubred PF16919.5 gi|48478235|ref|YP_023941.1| - 0.3 11.2 6.7 0.079 13.1 3.5 1.6 2 0 0 2 2 2 0 Protein kinase G rubredoxin domain Nudix_N_2 PF14803.6 gi|48478235|ref|YP_023941.1| - 0.32 10.9 12.7 2 8.4 7.9 3.3 2 1 0 2 2 2 0 Nudix N-terminal C1_2 PF03107.16 gi|48478235|ref|YP_023941.1| - 0.36 11.2 12.7 98 3.4 12.7 2.3 1 1 0 1 1 1 0 C1 domain FYVE_2 PF02318.16 gi|48478235|ref|YP_023941.1| - 0.67 10.2 4.6 0.84 9.9 4.6 1.1 1 0 0 1 1 1 0 FYVE-type zinc finger zf-HIT PF04438.16 gi|48478235|ref|YP_023941.1| - 0.72 9.8 15.1 0.66 9.9 4.6 2.9 2 1 0 2 2 2 0 HIT zinc finger Nop10p PF04135.12 gi|48478235|ref|YP_023941.1| - 0.88 9.7 9.3 0.71 10.0 2.2 2.4 1 1 1 2 2 2 0 Nucleolar RNA-binding protein, Nop10p family TF_Zn_Ribbon PF08271.12 gi|48478235|ref|YP_023941.1| - 0.95 9.0 16.9 2.7 7.6 11.1 3.4 2 1 0 2 2 2 0 TFIIB zinc-binding zf-Mss51 PF13824.6 gi|48478235|ref|YP_023941.1| - 1.2 9.3 13.9 3.8 7.7 3.0 2.9 1 1 2 3 3 3 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-ACC PF17848.1 gi|48478235|ref|YP_023941.1| - 1.5 9.0 17.4 2.2 8.4 1.0 3.9 4 0 0 4 4 4 0 Acetyl-coA carboxylase zinc finger domain Zn_Tnp_IS91 PF14319.6 gi|48478235|ref|YP_023941.1| - 1.8 8.6 9.3 4.4 7.4 9.3 1.7 1 1 0 1 1 1 0 Transposase zinc-binding domain zf_UBZ PF18439.1 gi|48478235|ref|YP_023941.1| - 2.9 7.6 14.6 1.1 8.9 0.2 3.8 3 1 1 4 4 4 0 Ubiquitin-Binding Zinc Finger DUF2752 PF10825.8 gi|48478235|ref|YP_023941.1| - 3.5 7.8 7.6 19 5.4 0.2 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF2752) zf-tcix PF14952.6 gi|48478235|ref|YP_023941.1| - 5.1 6.8 18.3 1.8 8.2 3.2 3.1 2 1 1 3 3 3 0 Putative treble-clef, zinc-finger, Zn-binding NRDD PF13597.6 gi|48478235|ref|YP_023941.1| - 5.6 5.6 12.7 1.3 7.8 0.9 2.0 1 1 1 2 2 2 0 Anaerobic ribonucleoside-triphosphate reductase zinc_ribbon_9 PF14369.6 gi|48478235|ref|YP_023941.1| - 6 7.2 13.7 9.3 6.6 2.4 3.3 2 2 1 3 3 3 0 zinc-ribbon Ribosomal_L32p PF01783.23 gi|48478235|ref|YP_023941.1| - 6 7.2 11.5 9.2 6.6 2.6 2.9 1 1 2 3 3 3 0 Ribosomal L32p protein family DUF1936 PF09151.10 gi|48478235|ref|YP_023941.1| - 7.1 6.6 15.1 14 5.7 1.2 3.4 2 1 0 2 2 2 0 Domain of unknown function (DUF1936) DUF2321 PF10083.9 gi|48478235|ref|YP_023941.1| - 8.2 6.0 8.6 0.34 10.5 1.6 2.1 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2321) EF1_GNE PF00736.19 gi|48478236|ref|YP_023942.1| - 1.7e-19 69.8 0.5 1.9e-19 69.6 0.5 1.0 1 0 0 1 1 1 1 EF-1 guanine nucleotide exchange domain Glyco_transf_21 PF13506.6 gi|48478237|ref|YP_023943.1| - 1.4e-21 76.7 0.0 2.6e-21 75.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glycos_transf_2 PF00535.26 gi|48478237|ref|YP_023943.1| - 3.1e-14 53.1 0.1 9.3e-14 51.6 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|48478237|ref|YP_023943.1| - 6.7e-10 39.2 0.0 1.2e-09 38.4 0.0 1.4 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 gi|48478237|ref|YP_023943.1| - 8.5e-06 25.8 0.3 1.5e-05 25.0 0.3 1.3 1 0 0 1 1 1 1 Glycosyl transferase family group 2 PGM_PMM_I PF02878.16 gi|48478238|ref|YP_023944.1| - 9.9e-40 135.4 0.2 2.9e-39 133.9 0.1 1.8 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_III PF02880.16 gi|48478238|ref|YP_023944.1| - 4.4e-27 94.5 0.0 8.5e-27 93.6 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_II PF02879.16 gi|48478238|ref|YP_023944.1| - 2.7e-26 92.2 0.0 5.4e-26 91.2 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.20 gi|48478238|ref|YP_023944.1| - 2.4e-12 46.8 0.1 5.4e-12 45.7 0.1 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain Methyltransf_32 PF13679.6 gi|48478238|ref|YP_023944.1| - 0.15 12.0 0.0 0.33 10.9 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain CDP-OH_P_transf PF01066.21 gi|48478239|ref|YP_023945.1| - 1.1e-13 51.7 7.3 1.9e-13 51.0 2.1 2.4 2 1 0 2 2 2 2 CDP-alcohol phosphatidyltransferase Glyco_tranf_2_3 PF13641.6 gi|48478240|ref|YP_023946.1| - 8.2e-34 117.5 0.0 1.1e-33 117.1 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 gi|48478240|ref|YP_023946.1| - 9.1e-28 97.5 1.1 1.3e-27 97.0 1.1 1.3 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glycos_transf_2 PF00535.26 gi|48478240|ref|YP_023946.1| - 3.6e-27 95.2 0.2 5.1e-27 94.7 0.2 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_transf_21 PF13506.6 gi|48478240|ref|YP_023946.1| - 7.5e-10 38.6 0.0 9.9e-10 38.2 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_4 PF13704.6 gi|48478240|ref|YP_023946.1| - 0.0013 19.2 0.1 0.0026 18.2 0.1 1.6 1 0 0 1 1 1 1 Glycosyl transferase family 2 DUF4231 PF14015.6 gi|48478240|ref|YP_023946.1| - 0.01 16.3 2.1 0.025 15.0 2.1 1.8 1 0 0 1 1 1 1 Protein of unknown function (DUF4231) OAD_gamma PF04277.13 gi|48478240|ref|YP_023946.1| - 0.26 11.9 1.5 0.85 10.3 1.5 1.8 1 0 0 1 1 1 0 Oxaloacetate decarboxylase, gamma chain SPC25 PF06703.11 gi|48478240|ref|YP_023946.1| - 0.28 10.9 9.3 0.8 9.5 8.1 2.2 2 0 0 2 2 2 0 Microsomal signal peptidase 25 kDa subunit (SPC25) Sugar_tr PF00083.24 gi|48478241|ref|YP_023947.1| - 4.7e-20 71.9 35.8 2.2e-19 69.7 11.0 2.2 1 1 1 2 2 2 2 Sugar (and other) transporter MFS_1 PF07690.16 gi|48478241|ref|YP_023947.1| - 3.4e-19 69.0 34.6 3.4e-19 69.0 34.6 1.8 1 1 0 1 1 1 1 Major Facilitator Superfamily GDC-P PF02347.16 gi|48478242|ref|YP_023948.1| - 4.3e-107 358.6 0.0 5.2e-107 358.3 0.0 1.0 1 0 0 1 1 1 1 Glycine cleavage system P-protein Aminotran_1_2 PF00155.21 gi|48478242|ref|YP_023948.1| - 0.0014 17.9 0.2 0.0046 16.2 0.0 1.7 2 0 0 2 2 2 1 Aminotransferase class I and II Aminotran_5 PF00266.19 gi|48478243|ref|YP_023949.1| - 2e-09 36.9 0.0 3.2e-09 36.2 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V GDC-P PF02347.16 gi|48478243|ref|YP_023949.1| - 1.2e-07 31.0 0.0 1.8e-07 30.3 0.0 1.3 1 0 0 1 1 1 1 Glycine cleavage system P-protein Beta_elim_lyase PF01212.21 gi|48478243|ref|YP_023949.1| - 2.7e-05 23.6 0.0 3.6e-05 23.2 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.17 gi|48478243|ref|YP_023949.1| - 0.21 10.9 0.0 0.35 10.1 0.0 1.3 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family EamA PF00892.20 gi|48478244|ref|YP_023950.1| - 1.6e-17 63.9 38.3 1.4e-09 38.2 15.0 2.2 2 0 0 2 2 2 2 EamA-like transporter family TMEM234 PF10639.9 gi|48478244|ref|YP_023950.1| - 0.58 10.2 16.2 0.56 10.3 2.6 3.4 2 2 0 2 2 2 0 Putative transmembrane family 234 Rieske PF00355.26 gi|48478246|ref|YP_023952.1| - 3.9e-16 58.8 0.0 4.4e-16 58.6 0.0 1.1 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Rieske_2 PF13806.6 gi|48478246|ref|YP_023952.1| - 1.4e-08 34.5 0.0 1.7e-08 34.4 0.0 1.1 1 0 0 1 1 1 1 Rieske-like [2Fe-2S] domain AMP-binding PF00501.28 gi|48478247|ref|YP_023953.1| - 1.5e-37 129.2 0.0 1.9e-37 128.9 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|48478247|ref|YP_023953.1| - 0.001 20.0 0.0 0.0018 19.2 0.0 1.3 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain DUF1965 PF09248.10 gi|48478247|ref|YP_023953.1| - 0.042 13.6 2.9 2.3 8.0 0.1 3.3 3 0 0 3 3 3 0 Domain of unknown function (DUF1965) ACAS_N PF16177.5 gi|48478247|ref|YP_023953.1| - 0.27 11.2 4.8 0.18 11.7 0.5 2.8 3 1 0 3 3 3 0 Acetyl-coenzyme A synthetase N-terminus MarR PF01047.22 gi|48478248|ref|YP_023954.1| - 6.7e-16 58.0 0.0 1e-15 57.4 0.0 1.3 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|48478248|ref|YP_023954.1| - 1.8e-09 37.4 0.0 4.3e-09 36.1 0.0 1.6 2 0 0 2 2 2 1 MarR family HTH_27 PF13463.6 gi|48478248|ref|YP_023954.1| - 1.3e-06 28.8 0.0 2.3e-06 28.0 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_34 PF13601.6 gi|48478248|ref|YP_023954.1| - 2.4e-06 27.7 0.0 3.4e-06 27.1 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.19 gi|48478248|ref|YP_023954.1| - 2.1e-05 24.3 0.1 0.00078 19.3 0.0 2.1 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|48478248|ref|YP_023954.1| - 0.041 13.4 0.4 0.59 9.7 0.0 2.9 2 1 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_54 PF18607.1 gi|48478248|ref|YP_023954.1| - 0.068 13.2 0.1 1.2 9.3 0.0 2.2 1 1 1 2 2 2 0 ParA helix turn helix domain Pyr_redox_2 PF07992.14 gi|48478249|ref|YP_023955.1| - 7e-32 110.8 0.1 1.2e-31 110.0 0.0 1.3 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|48478249|ref|YP_023955.1| - 2.4e-11 44.0 4.3 4.1e-11 43.3 0.2 3.0 3 1 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase UDPG_MGDP_dh_N PF03721.14 gi|48478249|ref|YP_023955.1| - 0.0035 16.9 0.0 0.0062 16.1 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_Gly3P_dh_N PF01210.23 gi|48478249|ref|YP_023955.1| - 0.061 13.3 0.0 0.13 12.3 0.0 1.5 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 3HCDH_N PF02737.18 gi|48478249|ref|YP_023955.1| - 0.067 13.1 0.0 0.11 12.4 0.0 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TrkA_N PF02254.18 gi|48478249|ref|YP_023955.1| - 0.079 13.2 0.2 0.42 10.9 0.0 2.1 2 0 0 2 2 2 0 TrkA-N domain SBP_bac_5 PF00496.22 gi|48478250|ref|YP_023956.1| - 5.1e-37 127.7 6.3 9.4e-37 126.8 6.3 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle Rhodanese PF00581.20 gi|48478251|ref|YP_023957.1| - 1.5e-13 51.2 0.1 1.8e-13 50.9 0.1 1.1 1 0 0 1 1 1 1 Rhodanese-like domain Sigma54_activ_2 PF14532.6 gi|48478251|ref|YP_023957.1| - 0.17 12.0 0.0 0.24 11.5 0.0 1.2 1 0 0 1 1 1 0 Sigma-54 interaction domain MFS_1 PF07690.16 gi|48478252|ref|YP_023958.1| - 5.9e-28 97.8 53.0 1.1e-17 64.1 23.2 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily DUF2250 PF10007.9 gi|48478253|ref|YP_023959.1| - 4.1e-06 26.8 1.4 7.1e-06 26.0 1.4 1.4 1 1 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) Mrr_N PF14338.6 gi|48478253|ref|YP_023959.1| - 0.0016 18.5 0.2 0.38 10.9 0.1 2.3 1 1 1 2 2 2 2 Mrr N-terminal domain DUF505 PF04458.12 gi|48478253|ref|YP_023959.1| - 0.0044 15.5 0.1 0.86 7.9 0.0 2.0 1 1 1 2 2 2 2 Protein of unknown function (DUF505) PadR PF03551.14 gi|48478253|ref|YP_023959.1| - 0.022 14.7 0.8 0.11 12.4 0.4 2.2 2 1 1 3 3 3 0 Transcriptional regulator PadR-like family NUDIX_2 PF13869.6 gi|48478254|ref|YP_023960.1| - 0.022 14.3 0.0 0.022 14.3 0.0 1.1 1 0 0 1 1 1 0 Nucleotide hydrolase RmuC PF02646.16 gi|48478254|ref|YP_023960.1| - 0.14 11.3 0.0 0.15 11.2 0.0 1.1 1 0 0 1 1 1 0 RmuC family Slx4 PF09494.10 gi|48478255|ref|YP_023961.1| - 0.0056 16.6 0.1 0.27 11.2 0.0 2.8 3 0 0 3 3 3 1 Slx4 endonuclease WAC_Acf1_DNA_bd PF10537.9 gi|48478255|ref|YP_023961.1| - 0.056 14.0 1.3 0.29 11.7 0.2 2.2 2 0 0 2 2 2 0 ATP-utilising chromatin assembly and remodelling N-terminal G_glu_transpept PF01019.21 gi|48478257|ref|YP_023963.1| - 5.4e-88 296.0 0.0 1.7e-86 291.1 0.0 2.1 1 1 0 1 1 1 1 Gamma-glutamyltranspeptidase Radical_SAM PF04055.21 gi|48478258|ref|YP_023964.1| - 1.7e-20 74.1 0.1 3.8e-20 72.9 0.0 1.7 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|48478258|ref|YP_023964.1| - 4.2e-07 30.1 1.4 1.3e-06 28.5 0.0 2.5 3 0 0 3 3 3 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|48478258|ref|YP_023964.1| - 4.3e-05 23.8 0.1 0.00013 22.3 0.0 1.8 1 1 0 1 1 1 1 4Fe-4S single cluster domain DUF2059 PF09832.9 gi|48478258|ref|YP_023964.1| - 0.023 14.7 0.0 0.052 13.6 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2059) OB_aCoA_assoc PF01796.17 gi|48478259|ref|YP_023965.1| - 3.8e-13 49.2 0.0 4.9e-13 48.9 0.0 1.1 1 0 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated DUF35_N PF12172.8 gi|48478259|ref|YP_023965.1| - 1.6e-05 24.6 2.6 2.7e-05 23.9 2.6 1.3 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) zinc_ribbon_2 PF13240.6 gi|48478259|ref|YP_023965.1| - 0.016 14.9 2.5 0.026 14.3 2.5 1.3 1 0 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_15 PF17032.5 gi|48478259|ref|YP_023965.1| - 0.019 15.7 0.2 0.036 14.8 0.2 1.5 1 0 0 1 1 1 0 zinc-ribbon family HypA PF01155.19 gi|48478259|ref|YP_023965.1| - 0.022 14.8 0.0 0.031 14.3 0.0 1.2 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DZR PF12773.7 gi|48478259|ref|YP_023965.1| - 0.059 13.4 0.4 0.092 12.8 0.4 1.3 1 0 0 1 1 1 0 Double zinc ribbon Thiolase_N PF00108.23 gi|48478260|ref|YP_023966.1| - 3.2e-11 43.1 0.1 2.4e-10 40.2 0.1 2.0 1 1 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|48478260|ref|YP_023966.1| - 6.3e-05 22.6 0.0 0.00013 21.6 0.0 1.6 1 0 0 1 1 1 1 Thiolase, C-terminal domain Acyl-CoA_dh_1 PF00441.24 gi|48478261|ref|YP_023967.1| - 1e-40 139.4 0.3 1.5e-40 138.8 0.3 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|48478261|ref|YP_023967.1| - 4.4e-26 91.7 0.0 8.6e-26 90.8 0.0 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.19 gi|48478261|ref|YP_023967.1| - 1.4e-22 79.6 0.0 2.3e-22 79.0 0.0 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 gi|48478261|ref|YP_023967.1| - 2.3e-14 53.8 0.0 3.3e-14 53.3 0.0 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Archease PF01951.16 gi|48478262|ref|YP_023968.1| - 1.6e-25 89.9 0.1 1.8e-25 89.8 0.1 1.0 1 0 0 1 1 1 1 Archease protein family (MTH1598/TM1083) tRNA-synt_1 PF00133.22 gi|48478263|ref|YP_023969.1| - 7.3e-59 199.5 1.3 5.1e-58 196.8 1.3 2.1 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) tRNA-synt_1g PF09334.11 gi|48478263|ref|YP_023969.1| - 8.5e-24 84.0 1.2 5e-12 45.3 0.0 3.6 2 2 1 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1_2 PF13603.6 gi|48478263|ref|YP_023969.1| - 8.7e-14 51.4 0.2 2.5e-13 49.9 0.2 1.8 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 Anticodon_1 PF08264.13 gi|48478263|ref|YP_023969.1| - 1.1e-12 48.1 1.6 1.1e-12 48.1 1.6 2.2 2 0 0 2 2 2 1 Anticodon-binding domain of tRNA tRNA-synt_1e PF01406.19 gi|48478263|ref|YP_023969.1| - 5.1e-10 39.2 1.0 0.00021 20.7 0.0 3.1 3 1 0 3 3 3 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.18 gi|48478263|ref|YP_023969.1| - 0.0012 17.9 1.2 0.011 14.6 0.0 2.7 2 0 0 2 2 2 1 tRNA synthetases class I (K) DUF1858 PF08984.11 gi|48478263|ref|YP_023969.1| - 0.0049 17.0 0.1 0.95 9.7 0.0 3.1 3 0 0 3 3 3 1 Domain of unknown function (DUF1858) PARP_reg PF02877.14 gi|48478263|ref|YP_023969.1| - 0.018 15.1 0.7 0.077 13.1 0.7 2.2 1 1 0 1 1 1 0 Poly(ADP-ribose) polymerase, regulatory domain Ndr PF03096.14 gi|48478263|ref|YP_023969.1| - 0.16 10.6 0.1 0.3 9.7 0.1 1.3 1 0 0 1 1 1 0 Ndr family PvlArgDC PF01862.16 gi|48478264|ref|YP_023970.1| - 3.6e-60 202.4 0.0 4.1e-60 202.3 0.0 1.0 1 0 0 1 1 1 1 Pyruvoyl-dependent arginine decarboxylase (PvlArgDC) DEAD PF00270.29 gi|48478266|ref|YP_023972.1| - 2e-32 112.4 0.0 5.5e-32 110.9 0.0 1.8 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|48478266|ref|YP_023972.1| - 3.2e-22 79.0 3.6 1.4e-18 67.2 0.1 4.1 3 1 0 3 3 3 2 Helicase conserved C-terminal domain DEAD_assoc PF08494.11 gi|48478266|ref|YP_023972.1| - 1.4e-12 47.8 0.0 3.3e-12 46.6 0.0 1.7 1 0 0 1 1 1 1 DEAD/H associated ResIII PF04851.15 gi|48478266|ref|YP_023972.1| - 6.5e-11 42.5 0.0 3.2e-10 40.3 0.0 2.2 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit UvrD-helicase PF00580.21 gi|48478266|ref|YP_023972.1| - 0.00039 20.1 0.3 0.0014 18.3 0.0 2.0 2 1 0 2 2 2 1 UvrD/REP helicase N-terminal domain AAA_19 PF13245.6 gi|48478266|ref|YP_023972.1| - 0.0075 16.6 0.0 0.031 14.6 0.0 2.1 2 0 0 2 2 2 1 AAA domain Zn-ribbon_8 PF09723.10 gi|48478266|ref|YP_023972.1| - 0.081 13.1 0.1 0.17 12.0 0.1 1.5 1 0 0 1 1 1 0 Zinc ribbon domain FtsK_SpoIIIE PF01580.18 gi|48478266|ref|YP_023972.1| - 0.084 12.2 0.0 0.23 10.8 0.0 1.7 1 0 0 1 1 1 0 FtsK/SpoIIIE family HypA PF01155.19 gi|48478266|ref|YP_023972.1| - 0.11 12.5 0.0 0.29 11.2 0.0 1.7 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA MRP-S24 PF14955.6 gi|48478266|ref|YP_023972.1| - 0.12 12.3 1.1 5.6 6.9 0.0 3.2 3 0 0 3 3 3 0 Mitochondrial ribosome subunit S24 Lip_prot_lig_C PF10437.9 gi|48478266|ref|YP_023972.1| - 0.51 10.4 3.4 6.3 6.9 0.1 3.5 3 0 0 3 3 3 0 Bacterial lipoate protein ligase C-terminus PUB PF09409.10 gi|48478266|ref|YP_023972.1| - 3.9 7.5 12.8 0.059 13.3 1.2 3.1 3 0 0 3 3 3 0 PUB domain Cpn60_TCP1 PF00118.24 gi|48478267|ref|YP_023973.1| - 2.9e-176 586.9 16.9 3.3e-176 586.7 16.9 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family YwpF PF14183.6 gi|48478267|ref|YP_023973.1| - 0.15 12.1 2.0 1.9 8.5 0.1 3.1 3 0 0 3 3 3 0 YwpF-like protein ATP-cone PF03477.16 gi|48478267|ref|YP_023973.1| - 0.41 11.3 4.0 1.8 9.2 0.4 3.6 4 1 0 4 4 4 0 ATP cone domain Wyosine_form PF08608.12 gi|48478268|ref|YP_023974.1| - 1.3e-20 73.5 0.0 9.5e-20 70.7 0.0 2.4 2 0 0 2 2 2 1 Wyosine base formation Radical_SAM PF04055.21 gi|48478268|ref|YP_023974.1| - 5.4e-19 69.2 0.0 1.1e-18 68.2 0.0 1.5 1 1 0 1 1 1 1 Radical SAM superfamily DUF4943 PF16301.5 gi|48478269|ref|YP_023975.1| - 0.065 13.3 0.0 0.069 13.2 0.0 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4943) ArsA_ATPase PF02374.15 gi|48478270|ref|YP_023976.1| - 3.1e-89 299.2 0.0 3.6e-89 298.9 0.0 1.0 1 0 0 1 1 1 1 Anion-transporting ATPase ArsA_HSP20 PF17886.1 gi|48478270|ref|YP_023976.1| - 3.8e-19 68.0 0.0 6.9e-19 67.2 0.0 1.5 1 0 0 1 1 1 1 HSP20-like domain found in ArsA AAA_31 PF13614.6 gi|48478270|ref|YP_023976.1| - 9.6e-10 38.7 0.0 1.8e-09 37.7 0.0 1.5 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|48478270|ref|YP_023976.1| - 1.7e-06 28.1 0.0 2.9e-06 27.4 0.0 1.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_24 PF13479.6 gi|48478270|ref|YP_023976.1| - 0.00015 21.6 0.2 0.00029 20.6 0.0 1.5 2 0 0 2 2 2 1 AAA domain ParA PF10609.9 gi|48478270|ref|YP_023976.1| - 0.0011 18.5 0.3 0.0063 16.0 0.4 2.0 2 0 0 2 2 2 1 NUBPL iron-transfer P-loop NTPase AAA_30 PF13604.6 gi|48478270|ref|YP_023976.1| - 0.011 15.5 0.0 0.014 15.1 0.0 1.2 1 0 0 1 1 1 0 AAA domain Fer4_NifH PF00142.18 gi|48478270|ref|YP_023976.1| - 0.013 15.0 0.0 0.019 14.5 0.0 1.2 1 0 0 1 1 1 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family PhoH PF02562.16 gi|48478270|ref|YP_023976.1| - 0.049 13.1 0.0 0.082 12.3 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein SRP54 PF00448.22 gi|48478270|ref|YP_023976.1| - 0.13 11.8 2.1 0.21 11.2 0.4 2.1 3 0 0 3 3 3 0 SRP54-type protein, GTPase domain polyprenyl_synt PF00348.17 gi|48478271|ref|YP_023977.1| - 1.1e-62 211.4 0.2 1.4e-62 211.1 0.2 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase HU-CCDC81_bac_2 PF18175.1 gi|48478271|ref|YP_023977.1| - 0.056 13.3 2.1 0.13 12.1 0.2 2.5 3 0 0 3 3 3 0 CCDC81-like prokaryotic HU domain 2 TraY PF05509.11 gi|48478271|ref|YP_023977.1| - 0.091 12.8 0.0 0.22 11.6 0.0 1.6 1 0 0 1 1 1 0 TraY domain Alba PF01918.21 gi|48478272|ref|YP_023978.1| - 1e-17 63.7 0.8 1.3e-17 63.3 0.8 1.2 1 0 0 1 1 1 1 Alba Rpp20 PF12328.8 gi|48478272|ref|YP_023978.1| - 0.0041 17.1 0.1 0.0056 16.6 0.1 1.4 1 1 0 1 1 1 1 Rpp20 subunit of nuclear RNase MRP and P HTH_24 PF13412.6 gi|48478273|ref|YP_023979.1| - 8.2e-15 54.1 1.7 1.2e-14 53.6 1.7 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|48478273|ref|YP_023979.1| - 3.6e-13 49.1 0.2 5.7e-13 48.5 0.2 1.3 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.12 gi|48478273|ref|YP_023979.1| - 2.1e-07 30.7 2.5 2.8e-07 30.4 1.0 2.0 3 0 0 3 3 1 1 HTH domain HTH_DeoR PF08220.12 gi|48478273|ref|YP_023979.1| - 1.1e-06 28.3 0.8 1.7e-06 27.6 0.4 1.5 2 0 0 2 2 1 1 DeoR-like helix-turn-helix domain HTH_Mga PF08280.11 gi|48478273|ref|YP_023979.1| - 1.5e-05 24.9 0.5 6.5e-05 22.9 0.2 2.1 2 0 0 2 2 2 1 M protein trans-acting positive regulator (MGA) HTH domain AsnC_trans_reg PF01037.21 gi|48478273|ref|YP_023979.1| - 3e-05 23.9 0.1 4.5e-05 23.3 0.1 1.4 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_5 PF01022.20 gi|48478273|ref|YP_023979.1| - 6.1e-05 22.8 0.0 8.4e-05 22.4 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TFIIE_alpha PF02002.17 gi|48478273|ref|YP_023979.1| - 0.00027 20.7 0.3 0.00045 20.0 0.3 1.4 1 1 0 1 1 1 1 TFIIE alpha subunit TrmB PF01978.19 gi|48478273|ref|YP_023979.1| - 0.00034 20.4 0.2 0.0029 17.4 0.0 2.0 1 1 1 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_Tnp_ISL3 PF13542.6 gi|48478273|ref|YP_023979.1| - 0.00066 19.0 0.0 0.0012 18.2 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 Sigma70_r4_2 PF08281.12 gi|48478273|ref|YP_023979.1| - 0.0017 18.0 0.1 0.0043 16.7 0.1 1.8 1 1 0 1 1 1 1 Sigma-70, region 4 HTH_36 PF13730.6 gi|48478273|ref|YP_023979.1| - 0.0019 18.1 0.0 0.0041 17.0 0.0 1.6 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 gi|48478273|ref|YP_023979.1| - 0.0026 17.5 0.0 0.0048 16.7 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain Fe_dep_repress PF01325.19 gi|48478273|ref|YP_023979.1| - 0.0038 17.4 0.1 0.011 15.9 0.0 1.8 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_29 PF13551.6 gi|48478273|ref|YP_023979.1| - 0.0038 17.2 0.0 0.0079 16.2 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn helix MarR_2 PF12802.7 gi|48478273|ref|YP_023979.1| - 0.0046 16.8 0.0 0.0075 16.1 0.0 1.4 1 0 0 1 1 1 1 MarR family PAX PF00292.18 gi|48478273|ref|YP_023979.1| - 0.0047 16.9 0.1 0.027 14.4 0.1 1.9 1 1 1 2 2 2 1 'Paired box' domain GerE PF00196.19 gi|48478273|ref|YP_023979.1| - 0.0048 16.4 0.2 0.011 15.3 0.2 1.7 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_38 PF13936.6 gi|48478273|ref|YP_023979.1| - 0.0049 16.6 0.8 0.01 15.6 0.3 1.8 2 1 0 2 2 1 1 Helix-turn-helix domain Sigma70_r4 PF04545.16 gi|48478273|ref|YP_023979.1| - 0.0063 16.0 0.0 0.012 15.2 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 MarR PF01047.22 gi|48478273|ref|YP_023979.1| - 0.0069 16.3 0.7 0.017 15.0 0.2 1.8 2 0 0 2 2 2 1 MarR family HTH_28 PF13518.6 gi|48478273|ref|YP_023979.1| - 0.011 15.9 0.0 0.017 15.2 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain Phage_NinH PF06322.11 gi|48478273|ref|YP_023979.1| - 0.012 15.4 0.1 0.025 14.5 0.1 1.7 1 0 0 1 1 1 0 Phage NinH protein HTH_40 PF14493.6 gi|48478273|ref|YP_023979.1| - 0.018 15.5 0.2 0.03 14.8 0.2 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain FeoC PF09012.10 gi|48478273|ref|YP_023979.1| - 0.02 15.0 0.0 0.033 14.3 0.0 1.3 1 0 0 1 1 1 0 FeoC like transcriptional regulator HTH_6 PF01418.17 gi|48478273|ref|YP_023979.1| - 0.021 14.8 0.2 0.058 13.4 0.1 1.8 2 0 0 2 2 1 0 Helix-turn-helix domain, rpiR family GntR PF00392.21 gi|48478273|ref|YP_023979.1| - 0.022 14.4 0.0 0.039 13.6 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family RPA_C PF08784.11 gi|48478273|ref|YP_023979.1| - 0.032 14.9 0.0 0.053 14.2 0.0 1.4 1 0 0 1 1 1 0 Replication protein A C terminal Ndr PF03096.14 gi|48478273|ref|YP_023979.1| - 0.035 12.8 0.0 0.042 12.6 0.0 1.2 1 0 0 1 1 1 0 Ndr family HTH_27 PF13463.6 gi|48478273|ref|YP_023979.1| - 0.042 14.3 0.1 0.1 13.1 0.1 1.8 1 0 0 1 1 1 0 Winged helix DNA-binding domain RuvB_C PF05491.13 gi|48478273|ref|YP_023979.1| - 0.052 13.4 1.1 0.071 13.0 0.4 1.6 2 0 0 2 2 1 0 RuvB C-terminal winged helix domain DUF2089 PF09862.9 gi|48478273|ref|YP_023979.1| - 0.058 13.4 0.0 0.075 13.1 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2089) HTH_20 PF12840.7 gi|48478273|ref|YP_023979.1| - 0.066 13.3 0.0 0.11 12.6 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain Phage_terminase PF10668.9 gi|48478273|ref|YP_023979.1| - 0.069 13.2 0.2 0.12 12.3 0.2 1.4 1 0 0 1 1 1 0 Phage terminase small subunit HTH_Crp_2 PF13545.6 gi|48478273|ref|YP_023979.1| - 0.071 13.1 0.1 0.13 12.3 0.1 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Mga PF05043.13 gi|48478273|ref|YP_023979.1| - 0.072 13.7 0.1 0.12 13.0 0.1 1.4 1 0 0 1 1 1 0 Mga helix-turn-helix domain RP-C PF03428.13 gi|48478273|ref|YP_023979.1| - 0.082 12.6 0.0 0.12 12.0 0.0 1.2 1 0 0 1 1 1 0 Replication protein C N-terminal domain Rrf2 PF02082.20 gi|48478273|ref|YP_023979.1| - 0.091 13.1 0.1 0.18 12.2 0.1 1.5 1 0 0 1 1 1 0 Transcriptional regulator NapD PF03927.13 gi|48478273|ref|YP_023979.1| - 0.098 12.7 0.8 0.16 12.1 0.1 1.7 2 0 0 2 2 1 0 NapD protein HTH_9 PF08221.11 gi|48478273|ref|YP_023979.1| - 0.1 12.7 0.0 0.23 11.6 0.0 1.6 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain DUF746 PF05344.11 gi|48478273|ref|YP_023979.1| - 0.11 12.3 0.0 1.3 8.9 0.0 2.2 2 0 0 2 2 2 0 Domain of Unknown Function (DUF746) HTH_IclR PF09339.10 gi|48478273|ref|YP_023979.1| - 0.19 11.5 0.0 0.32 10.8 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain DUF1599 PF07659.11 gi|48478273|ref|YP_023979.1| - 1.3 9.5 4.6 2.6 8.6 0.3 2.8 1 1 1 2 2 2 0 Nucleotide modification associated domain 1 Lactamase_B PF00753.27 gi|48478275|ref|YP_023981.1| - 1.9e-09 37.8 0.0 2.1e-09 37.7 0.0 1.1 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily PurS PF02700.14 gi|48478276|ref|YP_023982.1| - 1.2e-17 63.8 0.0 1.5e-17 63.5 0.0 1.0 1 0 0 1 1 1 1 Phosphoribosylformylglycinamidine (FGAM) synthase Acetyltransf_19 PF18015.1 gi|48478276|ref|YP_023982.1| - 0.09 13.0 0.0 0.098 12.9 0.0 1.0 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain AIRS_C PF02769.22 gi|48478277|ref|YP_023983.1| - 5.2e-39 133.9 0.0 1.3e-29 103.3 0.0 2.3 2 0 0 2 2 2 2 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|48478277|ref|YP_023983.1| - 8.3e-39 132.2 0.3 2.1e-22 79.6 0.1 2.4 2 0 0 2 2 2 2 AIR synthase related protein, N-terminal domain FGAR-AT_linker PF18072.1 gi|48478277|ref|YP_023983.1| - 1.9e-15 57.1 0.1 4.7e-15 55.9 0.1 1.7 1 0 0 1 1 1 1 Formylglycinamide ribonucleotide amidotransferase linker domain UPF0126 PF03458.13 gi|48478277|ref|YP_023983.1| - 0.046 13.6 0.4 0.11 12.4 0.4 1.6 1 0 0 1 1 1 0 UPF0126 domain DUF3098 PF11297.8 gi|48478279|ref|YP_023985.1| - 0.018 14.6 3.0 0.092 12.4 0.3 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3098) Neurensin PF14927.6 gi|48478279|ref|YP_023985.1| - 0.024 14.3 0.3 0.53 10.0 0.1 2.1 2 0 0 2 2 2 0 Neurensin DUF2371 PF10177.9 gi|48478279|ref|YP_023985.1| - 0.03 14.5 0.8 0.084 13.0 0.0 1.9 2 0 0 2 2 2 0 Uncharacterised conserved protein (DUF2371) DUF3040 PF11239.8 gi|48478279|ref|YP_023985.1| - 0.28 11.5 2.0 20 5.5 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3040) DUF2269 PF10027.9 gi|48478280|ref|YP_023986.1| - 1.1e-06 28.8 7.8 1.4e-06 28.4 7.8 1.1 1 0 0 1 1 1 1 Predicted integral membrane protein (DUF2269) CopD PF05425.13 gi|48478280|ref|YP_023986.1| - 0.00072 19.9 2.2 0.00072 19.9 2.2 1.6 2 0 0 2 2 2 1 Copper resistance protein D Glyco_transf_20 PF00982.21 gi|48478281|ref|YP_023987.1| - 8.1e-110 367.7 4.1 1.5e-109 366.8 4.1 1.4 1 1 0 1 1 1 1 Glycosyltransferase family 20 Glycos_transf_1 PF00534.20 gi|48478281|ref|YP_023987.1| - 0.0019 17.7 1.4 1.1 8.8 0.1 2.8 3 1 0 3 3 3 2 Glycosyl transferases group 1 Glyco_transf_5 PF08323.11 gi|48478281|ref|YP_023987.1| - 0.011 15.4 0.1 0.02 14.6 0.1 1.4 1 0 0 1 1 1 0 Starch synthase catalytic domain Aromatic_hydrox PF11723.8 gi|48478281|ref|YP_023987.1| - 0.073 12.6 1.3 0.14 11.6 1.3 1.4 1 0 0 1 1 1 0 Homotrimeric ring hydroxylase Trehalose_PPase PF02358.16 gi|48478282|ref|YP_023988.1| - 2.3e-21 76.0 0.0 3e-21 75.6 0.0 1.1 1 0 0 1 1 1 1 Trehalose-phosphatase Hydrolase_3 PF08282.12 gi|48478282|ref|YP_023988.1| - 2e-06 27.7 0.5 0.0021 17.9 0.3 2.2 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase CO_dh PF02552.16 gi|48478282|ref|YP_023988.1| - 0.0076 16.0 0.0 0.015 15.0 0.0 1.5 1 0 0 1 1 1 1 CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit DUF2150 PF09920.9 gi|48478282|ref|YP_023988.1| - 0.067 13.2 0.0 0.1 12.6 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2150) S6PP PF05116.13 gi|48478282|ref|YP_023988.1| - 0.12 11.9 0.0 1.5 8.3 0.0 2.0 2 0 0 2 2 2 0 Sucrose-6F-phosphate phosphohydrolase HTH_3 PF01381.22 gi|48478283|ref|YP_023989.1| - 1.2e-13 50.8 1.2 1.9e-13 50.2 1.2 1.3 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 gi|48478283|ref|YP_023989.1| - 1.4e-07 31.4 0.9 2.6e-07 30.5 0.9 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|48478283|ref|YP_023989.1| - 5.3e-05 23.5 0.0 8.6e-05 22.8 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Thioredoxin_4 PF13462.6 gi|48478283|ref|YP_023989.1| - 5.9e-05 23.3 0.0 7.9e-05 22.9 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin HTH_25 PF13413.6 gi|48478283|ref|YP_023989.1| - 0.0089 15.9 0.6 0.016 15.0 0.6 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain DUF4428 PF14471.6 gi|48478283|ref|YP_023989.1| - 0.092 12.7 0.1 0.19 11.7 0.1 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4428) Zn-ribbon_8 PF09723.10 gi|48478283|ref|YP_023989.1| - 0.1 12.7 0.5 0.19 11.9 0.5 1.4 1 0 0 1 1 1 0 Zinc ribbon domain Ribosomal_L28e PF01778.17 gi|48478283|ref|YP_023989.1| - 0.15 12.8 1.4 0.21 12.4 1.4 1.2 1 0 0 1 1 1 0 Ribosomal L28e protein family zf-dskA_traR PF01258.17 gi|48478283|ref|YP_023989.1| - 1.4 8.9 6.3 2.6 8.1 1.7 2.8 2 1 1 3 3 3 0 Prokaryotic dksA/traR C4-type zinc finger Fibrillarin PF01269.17 gi|48478284|ref|YP_023990.1| - 1.7e-55 187.6 0.9 1.8e-55 187.6 0.9 1.0 1 0 0 1 1 1 1 Fibrillarin OMPdecase PF00215.24 gi|48478284|ref|YP_023990.1| - 0.18 11.4 0.0 0.44 10.1 0.0 1.6 2 0 0 2 2 2 0 Orotidine 5'-phosphate decarboxylase / HUMPS family tRNA-synt_2 PF00152.20 gi|48478286|ref|YP_023992.1| - 9.1e-93 310.8 0.0 1.1e-92 310.5 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.25 gi|48478286|ref|YP_023992.1| - 9.5e-12 44.7 1.7 1.7e-11 43.9 1.7 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.20 gi|48478286|ref|YP_023992.1| - 0.00048 19.7 0.1 0.83 9.1 0.0 2.4 2 0 0 2 2 2 2 tRNA synthetases class II core domain (F) BOF PF04076.13 gi|48478286|ref|YP_023992.1| - 0.0056 16.7 1.0 0.014 15.5 1.0 1.6 1 0 0 1 1 1 1 Bacterial OB fold (BOF) protein NfeD PF01957.18 gi|48478287|ref|YP_023993.1| - 2.4e-13 50.3 0.1 2.4e-13 50.3 0.1 2.0 3 0 0 3 3 3 1 NfeD-like C-terminal, partner-binding CLP_protease PF00574.23 gi|48478287|ref|YP_023993.1| - 9.8e-06 25.6 1.5 8.2e-05 22.6 1.5 2.1 1 1 0 1 1 1 1 Clp protease Peptidase_S49 PF01343.18 gi|48478287|ref|YP_023993.1| - 0.00063 19.7 1.6 0.0018 18.2 1.2 2.0 1 1 0 2 2 2 1 Peptidase family S49 ECH_1 PF00378.20 gi|48478287|ref|YP_023993.1| - 0.0064 15.8 0.2 0.012 14.9 0.2 1.4 1 1 0 1 1 1 1 Enoyl-CoA hydratase/isomerase SDH_sah PF01972.16 gi|48478287|ref|YP_023993.1| - 0.011 14.7 0.2 0.029 13.4 0.0 1.6 1 1 1 2 2 2 0 Serine dehydrogenase proteinase DUF5624 PF18538.1 gi|48478287|ref|YP_023993.1| - 0.058 13.5 0.0 0.087 12.9 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF5624) DUF4834 PF16118.5 gi|48478287|ref|YP_023993.1| - 0.19 12.7 0.2 0.19 12.7 0.2 3.4 3 1 0 3 3 3 0 Domain of unknown function (DUF4834) DUF5388 PF17363.2 gi|48478287|ref|YP_023993.1| - 0.28 11.4 0.9 0.57 10.4 0.9 1.5 1 0 0 1 1 1 0 Family of unknown function (DUF5388) ASFV_J13L PF05568.11 gi|48478287|ref|YP_023993.1| - 3.1 7.5 8.8 2.4 7.9 1.0 2.9 3 0 0 3 3 3 0 African swine fever virus J13L protein DUF2070 PF09843.9 gi|48478287|ref|YP_023993.1| - 3.8 5.7 10.8 6.7 4.9 10.8 1.4 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) ROK PF00480.20 gi|48478288|ref|YP_023994.1| - 2.3e-74 250.6 0.8 2.7e-74 250.3 0.8 1.0 1 0 0 1 1 1 1 ROK family BcrAD_BadFG PF01869.20 gi|48478288|ref|YP_023994.1| - 0.01 15.3 0.3 2.1 7.7 0.0 2.2 2 0 0 2 2 2 0 BadF/BadG/BcrA/BcrD ATPase family MCM PF00493.23 gi|48478289|ref|YP_023995.1| - 3.4e-96 320.7 0.0 5e-96 320.1 0.0 1.2 1 0 0 1 1 1 1 MCM P-loop domain MCM_OB PF17207.3 gi|48478289|ref|YP_023995.1| - 2e-33 114.9 0.1 3.2e-33 114.2 0.1 1.3 1 0 0 1 1 1 1 MCM OB domain MCM_lid PF17855.1 gi|48478289|ref|YP_023995.1| - 4e-23 81.6 1.8 4e-23 81.6 1.8 2.0 2 0 0 2 2 2 1 MCM AAA-lid domain Mg_chelatase PF01078.21 gi|48478289|ref|YP_023995.1| - 6.4e-10 38.8 0.0 4.4e-06 26.2 0.0 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI MCM_N PF14551.6 gi|48478289|ref|YP_023995.1| - 5.9e-07 30.0 2.4 2.4e-06 28.0 0.4 2.7 2 0 0 2 2 2 1 MCM N-terminal domain AAA_5 PF07728.14 gi|48478289|ref|YP_023995.1| - 8.2e-05 22.6 0.0 0.00024 21.1 0.0 1.9 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_3 PF07726.11 gi|48478289|ref|YP_023995.1| - 0.00056 19.8 0.0 0.0017 18.2 0.0 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 gi|48478289|ref|YP_023995.1| - 0.0016 18.2 0.0 0.0049 16.6 0.0 1.7 1 1 0 1 1 1 1 Sigma-54 interaction domain zf-RING_7 PF02591.15 gi|48478289|ref|YP_023995.1| - 0.038 14.2 1.7 0.41 10.9 0.2 2.6 2 0 0 2 2 2 0 C4-type zinc ribbon domain zf-ribbon_3 PF13248.6 gi|48478289|ref|YP_023995.1| - 0.16 11.4 0.1 0.16 11.4 0.1 1.8 2 0 0 2 2 2 0 zinc-ribbon domain DUF1610 PF07754.11 gi|48478289|ref|YP_023995.1| - 0.16 12.0 0.3 0.49 10.4 0.3 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF1610) DUF424 PF04242.13 gi|48478290|ref|YP_023996.1| - 5.1e-28 97.2 0.0 5.8e-28 97.0 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF424) MmoB_DmpM PF02406.17 gi|48478290|ref|YP_023996.1| - 0.023 14.9 0.0 0.037 14.2 0.0 1.4 1 0 0 1 1 1 0 MmoB/DmpM family Ribosomal_S13 PF00416.22 gi|48478291|ref|YP_023997.1| - 6.1e-39 133.3 0.9 7.1e-39 133.1 0.9 1.0 1 0 0 1 1 1 1 Ribosomal protein S13/S18 S4 PF01479.25 gi|48478292|ref|YP_023998.1| - 5.7e-15 54.8 0.0 1.2e-14 53.8 0.0 1.5 1 0 0 1 1 1 1 S4 domain FBA_2 PF07735.17 gi|48478292|ref|YP_023998.1| - 0.054 13.6 0.5 0.13 12.4 0.5 1.6 1 0 0 1 1 1 0 F-box associated Ribosomal_S11 PF00411.19 gi|48478293|ref|YP_023999.1| - 2.6e-42 143.7 1.0 3.2e-42 143.4 1.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S11 RNA_pol_A_bac PF01000.26 gi|48478294|ref|YP_024000.1| - 3.2e-22 79.0 0.0 8.8e-22 77.6 0.0 1.7 2 0 0 2 2 2 1 RNA polymerase Rpb3/RpoA insert domain RNA_pol_L PF01193.24 gi|48478294|ref|YP_024000.1| - 3.3e-18 64.9 0.0 4.3e-18 64.5 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain TauE PF01925.19 gi|48478295|ref|YP_024001.1| - 1.7e-48 165.3 39.5 2e-48 165.1 39.5 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE Abhydrolase_1 PF00561.20 gi|48478296|ref|YP_024002.1| - 4.6e-10 39.6 0.4 1.9e-06 27.7 0.0 2.1 1 1 1 2 2 2 2 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|48478296|ref|YP_024002.1| - 2e-07 31.9 0.0 0.014 16.0 0.0 2.1 1 1 0 2 2 2 2 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 gi|48478296|ref|YP_024002.1| - 2.2e-07 30.4 0.0 0.0069 15.7 0.0 2.1 2 0 0 2 2 2 2 Serine aminopeptidase, S33 Abhydrolase_4 PF08386.10 gi|48478296|ref|YP_024002.1| - 0.017 15.2 0.0 0.026 14.6 0.0 1.3 1 0 0 1 1 1 0 TAP-like protein DLH PF01738.18 gi|48478296|ref|YP_024002.1| - 0.094 12.3 0.0 0.13 11.8 0.0 1.2 1 0 0 1 1 1 0 Dienelactone hydrolase family FbpA PF05833.11 gi|48478297|ref|YP_024003.1| - 4.8e-37 127.8 19.6 6.5e-37 127.4 19.6 1.1 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) NFACT-R_1 PF05670.13 gi|48478297|ref|YP_024003.1| - 5.8e-27 94.5 0.0 1.4e-26 93.3 0.0 1.7 1 0 0 1 1 1 1 NFACT protein RNA binding domain TA0956 PF11513.8 gi|48478297|ref|YP_024003.1| - 0.074 13.3 2.0 0.31 11.3 2.0 2.1 1 0 0 1 1 1 0 Thermoplasma acidophilum protein TA0956 JHD PF17811.1 gi|48478297|ref|YP_024003.1| - 0.27 11.8 2.7 3.4 8.2 0.4 3.0 3 0 0 3 3 3 0 Jumonji helical domain bact-PGI_C PF10432.9 gi|48478298|ref|YP_024004.1| - 3.8e-45 153.7 0.0 6.5e-45 152.9 0.0 1.4 1 0 0 1 1 1 1 Bacterial phospho-glucose isomerase C-terminal SIS domain SIS PF01380.22 gi|48478298|ref|YP_024004.1| - 4.3e-07 29.8 0.0 1.2e-06 28.4 0.0 1.8 1 0 0 1 1 1 1 SIS domain SIS_2 PF13580.6 gi|48478298|ref|YP_024004.1| - 0.095 12.7 0.0 0.18 11.8 0.0 1.4 1 0 0 1 1 1 0 SIS domain Pyr_redox_2 PF07992.14 gi|48478299|ref|YP_024005.1| - 6.4e-18 65.0 0.0 9.7e-18 64.4 0.0 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase DUF1641 PF07849.11 gi|48478300|ref|YP_024006.1| - 1.1e-11 44.4 0.0 8.6e-11 41.5 0.0 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF1641) STI1 PF17830.1 gi|48478300|ref|YP_024006.1| - 0.055 13.4 0.3 12 5.9 0.0 3.0 3 0 0 3 3 3 0 STI1 domain MxiM PF11441.8 gi|48478300|ref|YP_024006.1| - 0.12 12.7 1.3 0.39 11.0 0.3 2.2 1 1 1 2 2 2 0 Pilot protein MxiM Antimicrobial20 PF08256.11 gi|48478300|ref|YP_024006.1| - 9.9 7.0 7.8 16 6.4 0.1 3.4 3 0 0 3 3 3 0 Aurein-like antibiotic peptide VWA_2 PF13519.6 gi|48478301|ref|YP_024007.1| - 4.5e-07 30.5 0.0 1.8e-06 28.6 0.0 2.1 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA PF00092.28 gi|48478301|ref|YP_024007.1| - 5.8e-05 23.4 1.5 0.00072 19.8 0.2 2.8 3 1 0 3 3 3 1 von Willebrand factor type A domain DUF1829 PF08862.10 gi|48478301|ref|YP_024007.1| - 0.0038 17.7 3.1 0.0041 17.6 0.6 2.4 2 0 0 2 2 2 1 Domain of unknown function DUF1829 DUF4823 PF16105.5 gi|48478301|ref|YP_024007.1| - 0.029 14.2 0.1 8 6.3 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4823) VWA_CoxE PF05762.14 gi|48478301|ref|YP_024007.1| - 0.054 12.9 0.1 0.17 11.2 0.0 1.8 2 1 0 2 2 2 0 VWA domain containing CoxE-like protein AAA_5 PF07728.14 gi|48478302|ref|YP_024008.1| - 8.2e-21 74.5 0.1 2.8e-19 69.5 0.0 2.5 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_3 PF07726.11 gi|48478302|ref|YP_024008.1| - 2e-07 30.9 0.2 1.3e-06 28.3 0.0 2.2 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|48478302|ref|YP_024008.1| - 1.2e-06 29.0 0.0 8.7e-06 26.2 0.0 2.4 2 1 0 2 2 2 1 AAA ATPase domain AAA PF00004.29 gi|48478302|ref|YP_024008.1| - 0.00033 21.1 0.1 0.0012 19.3 0.0 2.1 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_lid_8 PF17868.1 gi|48478302|ref|YP_024008.1| - 0.0019 18.1 0.1 0.0046 16.8 0.1 1.7 1 0 0 1 1 1 1 AAA lid domain AAA_7 PF12775.7 gi|48478302|ref|YP_024008.1| - 0.0054 16.3 0.0 0.015 14.9 0.0 1.7 1 0 0 1 1 1 1 P-loop containing dynein motor region AAA_29 PF13555.6 gi|48478302|ref|YP_024008.1| - 0.055 13.2 0.1 0.13 12.0 0.1 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain Sec34 PF04136.15 gi|48478302|ref|YP_024008.1| - 0.058 13.3 3.3 0.055 13.3 1.0 2.0 2 0 0 2 2 2 0 Sec34-like family AAA_19 PF13245.6 gi|48478302|ref|YP_024008.1| - 0.078 13.3 1.0 0.86 9.9 0.0 2.8 4 0 0 4 4 4 0 AAA domain AAA_22 PF13401.6 gi|48478302|ref|YP_024008.1| - 0.11 12.8 0.1 1.3 9.3 0.0 2.4 2 0 0 2 2 2 0 AAA domain Syntaxin_2 PF14523.6 gi|48478302|ref|YP_024008.1| - 4.8 7.6 7.1 6.2 7.3 2.2 3.0 2 1 0 2 2 2 0 Syntaxin-like protein MS_channel PF00924.18 gi|48478303|ref|YP_024009.1| - 1.5e-22 80.2 10.5 1.5e-22 80.2 10.5 3.2 2 1 2 4 4 4 1 Mechanosensitive ion channel DUF2070 PF09843.9 gi|48478303|ref|YP_024009.1| - 0.49 8.6 15.7 0.69 8.1 15.7 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) tRNA-synt_2b PF00587.25 gi|48478304|ref|YP_024010.1| - 2.3e-39 135.2 0.0 4e-39 134.4 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) Seryl_tRNA_N PF02403.22 gi|48478304|ref|YP_024010.1| - 5.2e-21 74.9 5.5 1.2e-20 73.8 5.3 1.7 2 0 0 2 2 2 1 Seryl-tRNA synthetase N-terminal domain Sterile PF03015.19 gi|48478304|ref|YP_024010.1| - 0.06 13.6 0.0 0.16 12.2 0.0 1.7 1 0 0 1 1 1 0 Male sterility protein tRNA-synt_2 PF00152.20 gi|48478304|ref|YP_024010.1| - 0.099 11.7 0.0 0.2 10.7 0.0 1.5 1 0 0 1 1 1 0 tRNA synthetases class II (D, K and N) TMF_TATA_bd PF12325.8 gi|48478304|ref|YP_024010.1| - 0.14 12.4 0.6 0.26 11.5 0.6 1.3 1 0 0 1 1 1 0 TATA element modulatory factor 1 TATA binding TP_methylase PF00590.20 gi|48478305|ref|YP_024011.1| - 5.4e-07 29.8 0.0 6.2e-07 29.6 0.0 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases ATP-grasp_6 PF18419.1 gi|48478305|ref|YP_024011.1| - 0.088 12.5 0.3 2.8 7.7 0.1 2.5 2 0 0 2 2 2 0 ATP-grasp-like domain Enolase_C PF00113.22 gi|48478306|ref|YP_024012.1| - 7e-64 215.9 0.4 8.7e-64 215.6 0.4 1.1 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.16 gi|48478306|ref|YP_024012.1| - 7.9e-30 103.7 0.1 1.3e-29 103.0 0.1 1.4 1 0 0 1 1 1 1 Enolase, N-terminal domain MR_MLE_C PF13378.6 gi|48478306|ref|YP_024012.1| - 2.1e-07 30.7 0.0 3.3e-07 30.1 0.0 1.2 1 0 0 1 1 1 1 Enolase C-terminal domain-like MAAL_C PF07476.11 gi|48478306|ref|YP_024012.1| - 0.0067 15.6 0.0 0.013 14.7 0.0 1.4 1 0 0 1 1 1 1 Methylaspartate ammonia-lyase C-terminus AAA_32 PF13654.6 gi|48478307|ref|YP_024013.1| - 1.1e-32 113.5 0.1 1.5e-23 83.4 0.0 2.1 2 0 0 2 2 2 2 AAA domain Lon_C PF05362.13 gi|48478307|ref|YP_024013.1| - 3.3e-29 101.9 6.2 5.3e-29 101.2 6.2 1.3 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain Mg_chelatase PF01078.21 gi|48478307|ref|YP_024013.1| - 2.6e-15 56.4 0.1 3.4e-09 36.4 0.0 2.7 3 0 0 3 3 2 2 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.26 gi|48478307|ref|YP_024013.1| - 2.3e-14 53.5 0.0 9.8e-08 31.9 0.0 2.6 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_5 PF07728.14 gi|48478307|ref|YP_024013.1| - 5e-12 46.0 0.0 7.7e-05 22.7 0.0 2.6 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) MCM PF00493.23 gi|48478307|ref|YP_024013.1| - 4.7e-11 42.2 0.0 4.8e-05 22.6 0.0 2.6 2 0 0 2 2 2 2 MCM P-loop domain ChlI PF13541.6 gi|48478307|ref|YP_024013.1| - 9.3e-10 38.4 0.6 1.9e-09 37.4 0.6 1.5 1 0 0 1 1 1 1 Subunit ChlI of Mg-chelatase AAA PF00004.29 gi|48478307|ref|YP_024013.1| - 2.5e-07 31.2 0.0 0.034 14.6 0.0 3.0 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|48478307|ref|YP_024013.1| - 1.5e-06 28.5 0.0 0.0002 21.6 0.0 3.2 3 0 0 3 3 3 1 AAA domain AAA_3 PF07726.11 gi|48478307|ref|YP_024013.1| - 4.3e-06 26.6 0.0 0.003 17.4 0.0 2.8 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Sigma54_activ_2 PF14532.6 gi|48478307|ref|YP_024013.1| - 1.1e-05 25.5 0.0 0.24 11.5 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_7 PF12775.7 gi|48478307|ref|YP_024013.1| - 2e-05 24.2 0.0 0.00015 21.3 0.0 2.2 2 0 0 2 2 2 1 P-loop containing dynein motor region RuvB_N PF05496.12 gi|48478307|ref|YP_024013.1| - 4.2e-05 23.4 0.1 0.4 10.4 0.0 2.8 3 0 0 3 3 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|48478307|ref|YP_024013.1| - 0.00022 21.7 0.0 0.03 14.7 0.0 2.6 2 0 0 2 2 2 1 AAA ATPase domain AAA_19 PF13245.6 gi|48478307|ref|YP_024013.1| - 0.00047 20.5 0.0 0.12 12.7 0.0 2.6 2 0 0 2 2 2 1 AAA domain TIP49 PF06068.13 gi|48478307|ref|YP_024013.1| - 0.0015 17.8 0.0 0.07 12.3 0.0 2.5 2 0 0 2 2 2 1 TIP49 P-loop domain NACHT PF05729.12 gi|48478307|ref|YP_024013.1| - 0.002 18.1 0.0 0.0065 16.4 0.0 1.9 2 0 0 2 2 2 1 NACHT domain AAA_10 PF12846.7 gi|48478307|ref|YP_024013.1| - 0.014 14.4 0.1 0.044 12.7 0.0 1.9 2 0 0 2 2 2 0 AAA-like domain T2SSE PF00437.20 gi|48478307|ref|YP_024013.1| - 0.022 13.8 0.0 0.054 12.6 0.0 1.6 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_30 PF13604.6 gi|48478307|ref|YP_024013.1| - 0.044 13.5 0.0 0.56 9.9 0.0 2.2 2 0 0 2 2 2 0 AAA domain TniB PF05621.11 gi|48478307|ref|YP_024013.1| - 0.045 13.2 0.2 0.89 8.9 0.0 2.7 3 0 0 3 3 3 0 Bacterial TniB protein AAA_25 PF13481.6 gi|48478307|ref|YP_024013.1| - 0.049 13.2 0.0 0.21 11.1 0.0 2.1 2 0 0 2 2 2 0 AAA domain DUF4191 PF13829.6 gi|48478307|ref|YP_024013.1| - 0.071 12.4 0.4 0.17 11.2 0.4 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4191) DUF3194 PF11419.8 gi|48478307|ref|YP_024013.1| - 0.077 13.4 0.5 0.28 11.6 0.5 2.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3194) AAA_24 PF13479.6 gi|48478307|ref|YP_024013.1| - 0.1 12.3 0.0 0.26 11.0 0.0 1.7 1 0 0 1 1 1 0 AAA domain DUF2075 PF09848.9 gi|48478307|ref|YP_024013.1| - 0.11 11.7 0.0 0.58 9.3 0.0 2.1 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) DUF815 PF05673.13 gi|48478307|ref|YP_024013.1| - 0.11 11.6 0.0 0.23 10.6 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF815) DUF2207 PF09972.9 gi|48478307|ref|YP_024013.1| - 0.17 10.7 0.2 0.29 9.9 0.2 1.3 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) CGI-121 PF08617.10 gi|48478308|ref|YP_024014.1| - 0.0033 17.6 0.0 0.0039 17.3 0.0 1.2 1 0 0 1 1 1 1 Kinase binding protein CGI-121 Nuc_deoxyrib_tr PF05014.15 gi|48478308|ref|YP_024014.1| - 0.16 12.0 0.0 0.18 11.8 0.0 1.1 1 0 0 1 1 1 0 Nucleoside 2-deoxyribosyltransferase PfkB PF00294.24 gi|48478309|ref|YP_024015.1| - 8.8e-35 120.5 0.0 1.3e-34 119.9 0.0 1.2 1 0 0 1 1 1 1 pfkB family carbohydrate kinase PH_8 PF15409.6 gi|48478309|ref|YP_024015.1| - 0.11 12.8 0.1 1 9.7 0.0 2.3 2 0 0 2 2 2 0 Pleckstrin homology domain GDE_C PF06202.14 gi|48478310|ref|YP_024016.1| - 2.7e-90 303.1 0.5 4e-90 302.5 0.5 1.2 1 0 0 1 1 1 1 Amylo-alpha-1,6-glucosidase GDE_N PF12439.8 gi|48478310|ref|YP_024016.1| - 3.6e-44 150.8 1.6 5.6e-44 150.2 1.6 1.3 1 0 0 1 1 1 1 Glycogen debranching enzyme N terminal DUF608 PF04685.13 gi|48478310|ref|YP_024016.1| - 0.0015 17.8 1.4 0.0029 16.8 1.4 1.5 1 0 0 1 1 1 1 Glycosyl-hydrolase family 116, catalytic region Glyco_hydro_100 PF12899.7 gi|48478310|ref|YP_024016.1| - 0.0027 16.4 3.6 0.009 14.7 0.4 2.4 2 1 0 2 2 2 1 Alkaline and neutral invertase PduV-EutP PF10662.9 gi|48478310|ref|YP_024016.1| - 0.13 12.0 0.2 3.2 7.5 0.1 2.5 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation Glycos_transf_1 PF00534.20 gi|48478311|ref|YP_024017.1| - 2.1e-32 112.0 0.0 3.3e-32 111.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|48478311|ref|YP_024017.1| - 3.3e-25 89.0 0.0 7.2e-25 87.9 0.0 1.5 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.6 gi|48478311|ref|YP_024017.1| - 2.1e-22 80.0 0.0 3.1e-22 79.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_5 PF08323.11 gi|48478311|ref|YP_024017.1| - 2.7e-14 53.4 0.4 4.9e-13 49.3 0.2 2.3 1 1 1 2 2 2 1 Starch synthase catalytic domain Glyco_trans_4_4 PF13579.6 gi|48478311|ref|YP_024017.1| - 4.6e-14 53.2 0.0 8e-14 52.4 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.6 gi|48478311|ref|YP_024017.1| - 0.0015 18.6 0.1 0.0027 17.8 0.1 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.6 gi|48478311|ref|YP_024017.1| - 0.011 16.1 0.0 0.022 15.1 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferases group 1 Glyco_hydro_57 PF03065.15 gi|48478312|ref|YP_024018.1| - 1.3e-55 188.9 9.8 1.9e-55 188.4 9.8 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 57 Polysacc_deac_1 PF01522.21 gi|48478312|ref|YP_024018.1| - 1.8e-08 34.3 0.0 3.4e-08 33.4 0.0 1.5 1 0 0 1 1 1 1 Polysaccharide deacetylase V-ATPase_H_C PF11698.8 gi|48478312|ref|YP_024018.1| - 0.0047 17.0 1.1 0.065 13.3 0.0 2.5 2 1 1 3 3 3 1 V-ATPase subunit H Ribonuc_red_lgC PF02867.15 gi|48478313|ref|YP_024019.1| - 1.5e-159 531.9 0.0 4.4e-158 527.1 0.0 2.3 1 1 0 1 1 1 1 Ribonucleotide reductase, barrel domain Ribonuc_red_lgN PF00317.21 gi|48478313|ref|YP_024019.1| - 2.4e-33 114.0 0.2 8.5e-33 112.2 0.0 2.1 2 0 0 2 2 2 1 Ribonucleotide reductase, all-alpha domain ATP-cone PF03477.16 gi|48478313|ref|YP_024019.1| - 1.3e-21 76.9 4.1 1.8e-21 76.5 2.1 2.4 2 0 0 2 2 2 1 ATP cone domain SHE3 PF17078.5 gi|48478313|ref|YP_024019.1| - 0.7 9.6 5.8 0.065 12.9 0.6 1.9 2 0 0 2 2 2 0 SWI5-dependent HO expression protein 3 FTCD_N PF07837.12 gi|48478314|ref|YP_024020.1| - 5e-56 189.3 0.0 6.4e-56 188.9 0.0 1.1 1 0 0 1 1 1 1 Formiminotransferase domain, N-terminal subdomain FTCD PF02971.14 gi|48478314|ref|YP_024020.1| - 8.7e-20 71.2 0.0 1.5e-19 70.5 0.0 1.4 1 0 0 1 1 1 1 Formiminotransferase domain FTCD_C PF04961.12 gi|48478315|ref|YP_024021.1| - 2.1e-28 99.3 0.0 3.6e-28 98.6 0.0 1.3 1 0 0 1 1 1 1 Formiminotransferase-cyclodeaminase ZapC PF07126.12 gi|48478315|ref|YP_024021.1| - 0.0032 17.1 0.3 0.0058 16.2 0.3 1.4 1 0 0 1 1 1 1 Cell-division protein ZapC FTHFS PF01268.19 gi|48478316|ref|YP_024022.1| - 1.8e-214 713.0 0.3 2.1e-214 712.9 0.3 1.0 1 0 0 1 1 1 1 Formate--tetrahydrofolate ligase UvrD-helicase PF00580.21 gi|48478317|ref|YP_024023.1| - 1.9e-34 119.6 8.4 1.9e-34 119.6 8.4 2.4 2 1 0 2 2 2 1 UvrD/REP helicase N-terminal domain AAA_19 PF13245.6 gi|48478317|ref|YP_024023.1| - 5.9e-25 88.3 0.0 2.7e-24 86.2 0.0 2.0 2 0 0 2 2 2 1 AAA domain UvrD_C PF13361.6 gi|48478317|ref|YP_024023.1| - 7.8e-19 68.3 17.1 3.2e-09 36.6 0.0 4.2 4 0 0 4 4 4 3 UvrD-like helicase C-terminal domain PDDEXK_1 PF12705.7 gi|48478317|ref|YP_024023.1| - 3.6e-07 30.4 0.3 1.3e-06 28.5 0.3 1.9 1 1 0 1 1 1 1 PD-(D/E)XK nuclease superfamily AAA_11 PF13086.6 gi|48478317|ref|YP_024023.1| - 4.9e-06 26.5 0.0 4.9e-05 23.2 0.0 2.1 2 0 0 2 2 2 1 AAA domain UvrD_C_2 PF13538.6 gi|48478317|ref|YP_024023.1| - 8.4e-06 25.5 0.1 0.00042 20.1 0.1 2.4 1 1 0 1 1 1 1 UvrD-like helicase C-terminal domain Viral_helicase1 PF01443.18 gi|48478317|ref|YP_024023.1| - 0.00021 21.1 0.7 1.3 8.7 0.0 3.8 3 1 0 3 3 3 2 Viral (Superfamily 1) RNA helicase AAA_12 PF13087.6 gi|48478317|ref|YP_024023.1| - 0.00037 20.2 0.1 0.13 11.8 0.0 3.5 3 0 0 3 3 3 1 AAA domain Helicase_RecD PF05127.14 gi|48478317|ref|YP_024023.1| - 0.0026 17.6 0.0 0.0053 16.6 0.0 1.5 1 0 0 1 1 1 1 Helicase DUF2800 PF10926.8 gi|48478317|ref|YP_024023.1| - 0.0032 16.8 0.3 0.0053 16.1 0.3 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2800) AAA_30 PF13604.6 gi|48478317|ref|YP_024023.1| - 0.0056 16.4 0.0 0.18 11.5 0.0 2.6 3 0 0 3 3 3 1 AAA domain AAA PF00004.29 gi|48478317|ref|YP_024023.1| - 0.019 15.4 0.0 0.048 14.1 0.0 1.7 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) ResIII PF04851.15 gi|48478317|ref|YP_024023.1| - 0.031 14.3 1.0 0.088 12.8 0.0 2.3 3 0 0 3 3 3 0 Type III restriction enzyme, res subunit AAA_22 PF13401.6 gi|48478317|ref|YP_024023.1| - 0.13 12.5 0.0 0.41 10.9 0.0 1.8 1 0 0 1 1 1 0 AAA domain TauE PF01925.19 gi|48478318|ref|YP_024024.1| - 1.1e-43 149.6 28.4 1.1e-43 149.6 28.4 1.6 2 0 0 2 2 2 1 Sulfite exporter TauE/SafE Fijivirus_P9-2 PF06837.11 gi|48478318|ref|YP_024024.1| - 0.27 10.6 3.8 0.78 9.2 3.8 1.7 1 0 0 1 1 1 0 Fijivirus P9-2 protein TMEM141 PF15110.6 gi|48478318|ref|YP_024024.1| - 0.74 10.4 6.2 0.54 10.9 0.6 2.9 2 1 1 3 3 3 0 TMEM141 protein family DUF1634 PF07843.11 gi|48478319|ref|YP_024025.1| - 5.2e-26 90.7 6.8 6e-26 90.5 6.8 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1634) AhpC-TSA PF00578.21 gi|48478320|ref|YP_024026.1| - 5.3e-38 129.7 0.1 6.6e-38 129.4 0.1 1.0 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|48478320|ref|YP_024026.1| - 3.1e-24 85.4 0.0 3.5e-24 85.2 0.0 1.0 1 0 0 1 1 1 1 Redoxin AhpC-TSA_2 PF13911.6 gi|48478320|ref|YP_024026.1| - 0.00092 19.3 0.0 0.007 16.5 0.0 2.0 1 1 1 2 2 2 1 AhpC/TSA antioxidant enzyme SCO1-SenC PF02630.14 gi|48478320|ref|YP_024026.1| - 0.0011 18.9 0.0 0.0013 18.6 0.0 1.2 1 0 0 1 1 1 1 SCO1/SenC DUF899 PF05988.12 gi|48478320|ref|YP_024026.1| - 0.1 12.1 0.0 0.12 11.9 0.0 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF899) ADH_N PF08240.12 gi|48478321|ref|YP_024027.1| - 6e-31 106.6 0.6 1.3e-30 105.5 0.6 1.6 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|48478321|ref|YP_024027.1| - 1.8e-14 53.8 1.0 3e-14 53.1 1.0 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 gi|48478321|ref|YP_024027.1| - 1.1e-10 42.6 0.6 1.9e-10 41.9 0.6 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase 2-Hacid_dh_C PF02826.19 gi|48478321|ref|YP_024027.1| - 6.6e-05 22.3 0.2 0.00012 21.5 0.2 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CMAS PF02353.20 gi|48478321|ref|YP_024027.1| - 0.002 17.5 0.0 0.0029 16.9 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase AlaDh_PNT_C PF01262.21 gi|48478321|ref|YP_024027.1| - 0.0034 16.7 2.3 0.0055 16.0 2.3 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain CoA_binding PF02629.19 gi|48478321|ref|YP_024027.1| - 0.013 16.2 4.3 0.45 11.2 1.2 2.8 1 1 1 2 2 2 0 CoA binding domain Oxidored_nitro PF00148.19 gi|48478321|ref|YP_024027.1| - 0.016 13.9 0.1 0.023 13.4 0.1 1.3 1 0 0 1 1 1 0 Nitrogenase component 1 type Oxidoreductase Shikimate_DH PF01488.20 gi|48478321|ref|YP_024027.1| - 0.051 13.6 0.4 0.78 9.8 0.0 2.3 1 1 1 2 2 2 0 Shikimate / quinate 5-dehydrogenase SIS PF01380.22 gi|48478321|ref|YP_024027.1| - 0.15 12.0 0.3 0.32 10.8 0.1 1.8 2 0 0 2 2 2 0 SIS domain ELFV_dehydrog PF00208.21 gi|48478321|ref|YP_024027.1| - 0.26 11.0 2.9 0.36 10.5 0.3 2.0 1 1 1 2 2 2 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Sugar_tr PF00083.24 gi|48478323|ref|YP_024029.1| - 6.6e-44 150.5 30.5 8e-44 150.2 30.5 1.1 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.16 gi|48478323|ref|YP_024029.1| - 8e-30 104.0 42.8 8.4e-27 94.0 30.0 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Gp5_OB PF06714.11 gi|48478323|ref|YP_024029.1| - 0.049 13.9 0.1 0.083 13.1 0.1 1.4 1 0 0 1 1 1 0 Gp5 N-terminal OB domain MFS_3 PF05977.13 gi|48478323|ref|YP_024029.1| - 0.21 9.9 3.8 0.057 11.8 0.1 1.8 2 0 0 2 2 2 0 Transmembrane secretion effector DUF2583 PF10762.9 gi|48478323|ref|YP_024029.1| - 0.68 10.4 4.3 0.68 10.4 0.6 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF2583) MFS_2 PF13347.6 gi|48478323|ref|YP_024029.1| - 1.2 7.6 42.7 0.13 10.8 7.1 3.6 2 2 1 3 3 3 0 MFS/sugar transport protein DS PF01916.17 gi|48478324|ref|YP_024030.1| - 1.8e-107 358.9 0.0 2e-107 358.8 0.0 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase DUF1127 PF06568.11 gi|48478324|ref|YP_024030.1| - 0.092 12.5 0.0 0.25 11.1 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF1127) Fer4_10 PF13237.6 gi|48478325|ref|YP_024031.1| - 1.5e-05 25.0 6.5 1.5e-05 25.0 6.5 1.8 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|48478325|ref|YP_024031.1| - 0.00018 22.0 10.1 0.011 16.2 9.4 2.9 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|48478325|ref|YP_024031.1| - 0.00026 20.9 9.7 0.033 14.3 0.6 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|48478325|ref|YP_024031.1| - 0.00048 20.0 8.4 0.11 12.7 0.2 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|48478325|ref|YP_024031.1| - 0.00093 19.3 5.2 0.00093 19.3 5.2 1.9 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|48478325|ref|YP_024031.1| - 0.0035 17.1 0.4 0.0035 17.1 0.4 2.9 2 1 0 2 2 2 1 4Fe-4S binding domain Fer4_16 PF13484.6 gi|48478325|ref|YP_024031.1| - 0.1 13.5 4.5 4.7 8.2 0.0 2.3 2 0 0 2 2 2 0 4Fe-4S double cluster binding domain Fer4_20 PF14691.6 gi|48478325|ref|YP_024031.1| - 0.12 12.2 5.1 0.062 13.1 1.3 2.1 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_8 PF13183.6 gi|48478325|ref|YP_024031.1| - 0.47 10.9 8.1 5.3 7.6 1.6 2.8 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|48478325|ref|YP_024031.1| - 0.68 10.1 9.7 0.33 11.1 6.6 2.1 2 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|48478325|ref|YP_024031.1| - 0.78 10.8 9.8 4.6 8.4 0.3 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain YrhK PF14145.6 gi|48478327|ref|YP_024033.1| - 7.7e-16 57.7 3.1 1.6e-15 56.7 3.1 1.6 1 0 0 1 1 1 1 YrhK-like protein Mur_ligase_M PF08245.12 gi|48478328|ref|YP_024034.1| - 8.4e-12 45.5 0.1 1.3e-11 44.9 0.1 1.3 1 0 0 1 1 1 1 Mur ligase middle domain Mur_ligase_C PF02875.21 gi|48478328|ref|YP_024034.1| - 7.2e-08 32.6 0.0 8.8e-07 29.1 0.0 2.3 2 0 0 2 2 2 1 Mur ligase family, glutamate ligase domain Cdc6_C PF09079.11 gi|48478329|ref|YP_024035.1| - 2.3e-18 65.9 0.1 7.7e-18 64.3 0.1 1.9 2 0 0 2 2 2 1 CDC6, C terminal winged helix domain AAA_22 PF13401.6 gi|48478329|ref|YP_024035.1| - 6.3e-09 36.2 0.1 2.5e-08 34.3 0.0 1.9 3 0 0 3 3 2 1 AAA domain AAA_16 PF13191.6 gi|48478329|ref|YP_024035.1| - 1.1e-07 32.5 0.0 7.6e-07 29.7 0.0 2.1 1 1 1 2 2 2 1 AAA ATPase domain AAA PF00004.29 gi|48478329|ref|YP_024035.1| - 3.3e-07 30.8 0.1 1.8e-06 28.4 0.1 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DUF815 PF05673.13 gi|48478329|ref|YP_024035.1| - 0.00021 20.6 0.0 0.00035 19.8 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF815) DEAD PF00270.29 gi|48478329|ref|YP_024035.1| - 0.00069 19.4 0.1 0.33 10.7 0.0 3.1 3 1 0 3 3 3 1 DEAD/DEAH box helicase ATPase PF06745.13 gi|48478329|ref|YP_024035.1| - 0.0016 17.9 0.7 1 8.6 0.1 2.5 2 0 0 2 2 2 2 KaiC AAA_24 PF13479.6 gi|48478329|ref|YP_024035.1| - 0.003 17.3 0.0 0.0069 16.1 0.0 1.6 1 0 0 1 1 1 1 AAA domain KAP_NTPase PF07693.14 gi|48478329|ref|YP_024035.1| - 0.0094 15.2 0.4 4 6.6 0.0 2.6 1 1 2 3 3 3 2 KAP family P-loop domain AAA_25 PF13481.6 gi|48478329|ref|YP_024035.1| - 0.014 15.0 0.0 1.2 8.6 0.0 2.3 2 0 0 2 2 2 0 AAA domain TIP49_C PF17856.1 gi|48478329|ref|YP_024035.1| - 0.016 15.3 0.1 0.04 14.0 0.1 1.8 1 0 0 1 1 1 0 TIP49 AAA-lid domain AAA_7 PF12775.7 gi|48478329|ref|YP_024035.1| - 0.025 14.1 0.1 0.19 11.2 0.0 2.1 2 0 0 2 2 2 0 P-loop containing dynein motor region ATPase_2 PF01637.18 gi|48478329|ref|YP_024035.1| - 0.036 14.0 0.5 0.19 11.6 0.3 2.1 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea Peptidase_M24 PF00557.24 gi|48478329|ref|YP_024035.1| - 0.047 13.4 0.0 0.077 12.7 0.0 1.2 1 0 0 1 1 1 0 Metallopeptidase family M24 NACHT PF05729.12 gi|48478329|ref|YP_024035.1| - 0.059 13.3 0.0 0.16 11.9 0.0 1.6 1 1 0 1 1 1 0 NACHT domain TsaE PF02367.17 gi|48478329|ref|YP_024035.1| - 0.062 13.3 0.0 0.11 12.5 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE IstB_IS21 PF01695.17 gi|48478329|ref|YP_024035.1| - 0.062 13.0 0.1 2.8 7.6 0.0 2.6 3 0 0 3 3 3 0 IstB-like ATP binding protein DNA_pol3_delta2 PF13177.6 gi|48478329|ref|YP_024035.1| - 0.07 12.9 0.1 0.15 11.8 0.0 1.7 2 0 0 2 2 2 0 DNA polymerase III, delta subunit Sigma54_activat PF00158.26 gi|48478329|ref|YP_024035.1| - 0.12 12.1 0.1 0.37 10.5 0.0 1.8 2 0 0 2 2 2 0 Sigma-54 interaction domain TENA_THI-4 PF03070.16 gi|48478330|ref|YP_024036.1| - 1.1e-20 74.4 1.6 1.7e-20 73.7 1.6 1.2 1 0 0 1 1 1 1 TENA/THI-4/PQQC family DUF1128 PF06569.11 gi|48478330|ref|YP_024036.1| - 0.072 13.1 2.4 1.4 8.9 0.1 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF1128) Glyco_hydro_1 PF00232.18 gi|48478331|ref|YP_024037.1| - 7.2e-21 74.1 2.9 6.6e-13 47.9 0.1 3.2 3 0 0 3 3 3 3 Glycosyl hydrolase family 1 Cellulase PF00150.18 gi|48478331|ref|YP_024037.1| - 0.0081 15.6 1.2 0.016 14.7 0.3 1.9 1 1 0 2 2 2 1 Cellulase (glycosyl hydrolase family 5) BPL_LplA_LipB PF03099.19 gi|48478332|ref|YP_024038.1| - 1.1e-05 25.4 0.0 1.8e-05 24.6 0.0 1.4 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family Mu-like_gpT PF10124.9 gi|48478332|ref|YP_024038.1| - 0.033 13.5 0.0 0.066 12.5 0.0 1.4 1 0 0 1 1 1 0 Mu-like prophage major head subunit gpT Aldedh PF00171.22 gi|48478333|ref|YP_024039.1| - 1.6e-129 432.4 0.0 1.9e-129 432.2 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.14 gi|48478333|ref|YP_024039.1| - 7.8e-05 21.9 0.0 0.00011 21.4 0.0 1.4 1 1 0 1 1 1 1 Acyl-CoA reductase (LuxC) RNase_HII PF01351.18 gi|48478335|ref|YP_024041.1| - 6.3e-39 133.9 0.0 7.6e-39 133.6 0.0 1.1 1 0 0 1 1 1 1 Ribonuclease HII DUF134 PF02001.16 gi|48478336|ref|YP_024042.1| - 0.025 15.1 0.1 0.054 14.1 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function DUF134 zinc_ribbon_2 PF13240.6 gi|48478337|ref|YP_024043.1| - 9e-07 28.4 4.6 1.5e-06 27.7 4.6 1.4 1 0 0 1 1 1 1 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|48478337|ref|YP_024043.1| - 1e-06 27.9 1.4 1.5e-06 27.4 1.4 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|48478337|ref|YP_024043.1| - 4.1e-05 23.5 0.7 6.3e-05 22.9 0.7 1.2 1 0 0 1 1 1 1 Double zinc ribbon UPF0547 PF10571.9 gi|48478337|ref|YP_024043.1| - 7.2e-05 22.8 1.3 0.00011 22.2 1.3 1.2 1 0 0 1 1 1 1 Uncharacterised protein family UPF0547 zinc_ribbon_15 PF17032.5 gi|48478337|ref|YP_024043.1| - 0.0006 20.5 0.2 0.00089 20.0 0.2 1.4 1 0 0 1 1 1 1 zinc-ribbon family Ribosomal_L32p PF01783.23 gi|48478337|ref|YP_024043.1| - 0.017 15.4 0.8 0.036 14.3 0.8 1.6 1 0 0 1 1 1 0 Ribosomal L32p protein family NRDD PF13597.6 gi|48478337|ref|YP_024043.1| - 0.042 12.6 0.1 0.05 12.4 0.1 1.3 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase Vps36_ESCRT-II PF11605.8 gi|48478337|ref|YP_024043.1| - 0.042 14.0 0.2 0.13 12.5 0.2 1.9 1 1 0 1 1 1 0 Vacuolar protein sorting protein 36 Vps36 Cript PF10235.9 gi|48478337|ref|YP_024043.1| - 0.044 14.3 0.2 0.072 13.7 0.1 1.4 1 1 0 1 1 1 0 Microtubule-associated protein CRIPT GRAM PF02893.20 gi|48478337|ref|YP_024043.1| - 0.072 13.0 0.2 0.18 11.7 0.1 1.8 1 1 0 1 1 1 0 GRAM domain HypA PF01155.19 gi|48478337|ref|YP_024043.1| - 0.14 12.2 1.1 0.25 11.4 1.1 1.5 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-NADH-PPase PF09297.11 gi|48478337|ref|YP_024043.1| - 0.24 11.1 4.1 1.6 8.5 0.3 2.4 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Nudix_N_2 PF14803.6 gi|48478337|ref|YP_024043.1| - 0.29 11.1 3.6 1.8 8.5 0.4 2.4 2 0 0 2 2 2 0 Nudix N-terminal TF_Zn_Ribbon PF08271.12 gi|48478337|ref|YP_024043.1| - 4.6 6.8 5.8 14 5.3 5.8 1.8 1 1 0 1 1 1 0 TFIIB zinc-binding DUF2250 PF10007.9 gi|48478338|ref|YP_024044.1| - 4.6e-35 119.6 12.2 1.7e-33 114.5 8.6 2.3 2 0 0 2 2 2 2 Uncharacterized protein conserved in archaea (DUF2250) HTH_5 PF01022.20 gi|48478338|ref|YP_024044.1| - 4.2e-05 23.3 0.1 0.00033 20.5 0.0 2.3 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family DUF4423 PF14394.6 gi|48478338|ref|YP_024044.1| - 0.00032 20.5 1.7 0.0016 18.2 0.3 2.0 1 1 1 2 2 2 1 Domain of unknown function (DUF4423) HTH_27 PF13463.6 gi|48478338|ref|YP_024044.1| - 0.059 13.9 1.7 29 5.3 0.1 3.2 2 1 1 3 3 3 0 Winged helix DNA-binding domain MFS_1 PF07690.16 gi|48478339|ref|YP_024045.1| - 4.7e-28 98.1 39.8 4.7e-28 98.1 39.8 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|48478339|ref|YP_024045.1| - 9e-28 97.3 36.5 8e-21 74.4 14.5 2.2 1 1 1 2 2 2 2 Sugar (and other) transporter B9-C2 PF07162.11 gi|48478339|ref|YP_024045.1| - 0.2 11.8 0.0 0.31 11.2 0.0 1.3 1 0 0 1 1 1 0 Ciliary basal body-associated, B9 protein OATP PF03137.20 gi|48478339|ref|YP_024045.1| - 4.1 5.6 8.5 5.8 5.1 1.2 2.4 1 1 1 2 2 2 0 Organic Anion Transporter Polypeptide (OATP) family AA_permease PF00324.21 gi|48478341|ref|YP_024047.1| - 8.4e-17 60.9 53.7 1.2e-16 60.4 53.7 1.1 1 0 0 1 1 1 1 Amino acid permease CBS PF00571.28 gi|48478341|ref|YP_024047.1| - 1.4e-14 54.3 0.9 1.2e-07 32.1 0.2 3.0 3 0 0 3 3 3 2 CBS domain AA_permease_2 PF13520.6 gi|48478341|ref|YP_024047.1| - 3.1e-09 36.2 57.5 4.3e-09 35.7 57.5 1.2 1 0 0 1 1 1 1 Amino acid permease AdoHcyase PF05221.17 gi|48478342|ref|YP_024048.1| - 1.7e-53 181.7 0.0 1.4e-26 93.3 0.0 2.0 1 1 1 2 2 2 2 S-adenosyl-L-homocysteine hydrolase AdoHcyase_NAD PF00670.21 gi|48478342|ref|YP_024048.1| - 9.9e-50 168.8 0.9 1.6e-49 168.1 0.9 1.3 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain IlvN PF07991.12 gi|48478342|ref|YP_024048.1| - 1.2e-07 31.4 0.1 2e-07 30.7 0.1 1.3 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain 2-Hacid_dh_C PF02826.19 gi|48478342|ref|YP_024048.1| - 1.9e-07 30.6 0.1 3.2e-07 29.9 0.1 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|48478342|ref|YP_024048.1| - 0.00037 21.0 0.1 0.00084 19.9 0.1 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent THF_DHG_CYH_C PF02882.19 gi|48478342|ref|YP_024048.1| - 0.0016 17.8 0.1 0.0087 15.4 0.1 1.9 1 1 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Shikimate_DH PF01488.20 gi|48478342|ref|YP_024048.1| - 0.0051 16.9 0.5 0.023 14.8 0.1 2.1 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase NAD_binding_7 PF13241.6 gi|48478342|ref|YP_024048.1| - 0.02 15.3 0.1 0.047 14.1 0.1 1.6 1 0 0 1 1 1 0 Putative NAD(P)-binding 3HCDH_N PF02737.18 gi|48478342|ref|YP_024048.1| - 0.021 14.7 0.5 0.26 11.2 0.3 2.2 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 gi|48478342|ref|YP_024048.1| - 0.027 14.6 0.2 0.073 13.2 0.2 1.8 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase AlaDh_PNT_C PF01262.21 gi|48478342|ref|YP_024048.1| - 0.03 13.6 0.8 0.074 12.3 0.7 1.6 1 1 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain TrkA_N PF02254.18 gi|48478342|ref|YP_024048.1| - 0.072 13.4 0.1 0.15 12.3 0.1 1.6 1 0 0 1 1 1 0 TrkA-N domain UDPG_MGDP_dh_N PF03721.14 gi|48478342|ref|YP_024048.1| - 0.097 12.2 0.5 0.2 11.2 0.5 1.5 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain PhosphMutase PF10143.9 gi|48478343|ref|YP_024049.1| - 1.2e-53 181.5 0.0 1.8e-53 180.9 0.0 1.3 1 0 0 1 1 1 1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Metalloenzyme PF01676.18 gi|48478343|ref|YP_024049.1| - 2.5e-35 122.1 0.0 2.8e-35 121.9 0.0 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily Phosphodiest PF01663.22 gi|48478343|ref|YP_024049.1| - 2.1e-05 24.3 0.0 0.00016 21.4 0.0 2.0 2 0 0 2 2 2 1 Type I phosphodiesterase / nucleotide pyrophosphatase Alk_phosphatase PF00245.20 gi|48478343|ref|YP_024049.1| - 0.0091 15.0 0.2 0.1 11.6 0.0 2.0 2 0 0 2 2 2 1 Alkaline phosphatase Sulfatase PF00884.23 gi|48478343|ref|YP_024049.1| - 0.034 13.5 0.1 0.62 9.4 0.1 2.3 2 0 0 2 2 2 0 Sulfatase DUF4919 PF16266.5 gi|48478343|ref|YP_024049.1| - 0.091 12.7 0.1 0.17 11.8 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4919) Polyketide_cyc PF03364.20 gi|48478344|ref|YP_024050.1| - 0.062 13.5 0.0 0.089 13.0 0.0 1.3 1 0 0 1 1 1 0 Polyketide cyclase / dehydrase and lipid transport Lactamase_B_2 PF12706.7 gi|48478345|ref|YP_024051.1| - 7.7e-19 68.0 0.0 2.6e-09 36.9 0.0 2.1 2 0 0 2 2 2 2 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|48478345|ref|YP_024051.1| - 3.5e-08 33.7 0.0 1.1e-07 32.0 0.0 1.8 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_4 PF13691.6 gi|48478345|ref|YP_024051.1| - 1.3e-06 28.0 0.0 3.2e-06 26.7 0.0 1.7 1 0 0 1 1 1 1 tRNase Z endonuclease PDEase_II PF02112.15 gi|48478345|ref|YP_024051.1| - 0.0011 18.1 0.0 0.0015 17.7 0.0 1.2 1 0 0 1 1 1 1 cAMP phosphodiesterases class-II DUF1805 PF08827.11 gi|48478346|ref|YP_024052.1| - 9.3e-20 70.7 0.2 1e-19 70.6 0.2 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1805) Pyr_redox PF00070.27 gi|48478346|ref|YP_024052.1| - 0.024 15.2 0.0 0.03 14.9 0.0 1.1 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase IMS PF00817.20 gi|48478346|ref|YP_024052.1| - 0.09 12.8 0.0 0.093 12.7 0.0 1.1 1 0 0 1 1 1 0 impB/mucB/samB family NUMOD1 PF07453.13 gi|48478346|ref|YP_024052.1| - 0.1 12.9 0.0 0.29 11.4 0.0 1.7 2 0 0 2 2 2 0 NUMOD1 domain Styelin PF17562.2 gi|48478347|ref|YP_024053.1| - 0.0003 21.1 0.1 0.001 19.4 0.1 1.9 2 1 0 2 2 2 1 Styelin YopH_N PF09013.10 gi|48478347|ref|YP_024053.1| - 0.031 14.5 0.1 0.039 14.2 0.1 1.2 1 0 0 1 1 1 0 YopH, N-terminal DUF4983 PF16356.5 gi|48478348|ref|YP_024054.1| - 0.077 13.8 0.1 0.27 12.1 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4983) RmlD_sub_bind PF04321.17 gi|48478349|ref|YP_024055.1| - 3.5e-14 52.6 0.0 4.5e-14 52.2 0.0 1.0 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.12 gi|48478349|ref|YP_024055.1| - 0.12 11.5 0.0 0.16 11.1 0.0 1.3 1 0 0 1 1 1 0 Male sterility protein SRP1_TIP1 PF00660.17 gi|48478349|ref|YP_024055.1| - 0.87 9.7 3.6 1.2 9.2 0.4 2.3 2 0 0 2 2 2 0 Seripauperin and TIP1 family MFS_1 PF07690.16 gi|48478350|ref|YP_024056.1| - 1.5e-28 99.8 48.5 2.7e-16 59.5 26.4 2.4 1 1 1 2 2 2 2 Major Facilitator Superfamily UNC-93 PF05978.16 gi|48478350|ref|YP_024056.1| - 4.5e-05 23.2 4.6 4.5e-05 23.2 4.6 3.3 3 1 1 4 4 4 1 Ion channel regulatory protein UNC-93 Sugar_tr PF00083.24 gi|48478350|ref|YP_024056.1| - 6.9 5.4 37.4 0.022 13.7 11.5 2.9 1 1 0 2 2 2 0 Sugar (and other) transporter DHDPS PF00701.22 gi|48478351|ref|YP_024057.1| - 1.5e-43 148.6 0.0 1.8e-43 148.3 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family Ribosomal_L7Ae PF01248.26 gi|48478352|ref|YP_024058.1| - 3.4e-24 84.4 0.5 4e-24 84.2 0.5 1.1 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family RNase_P_pop3 PF08228.11 gi|48478352|ref|YP_024058.1| - 0.0038 17.3 0.0 0.0047 17.0 0.0 1.1 1 0 0 1 1 1 1 RNase P subunit Pop3 Ribosomal_S28e PF01200.18 gi|48478353|ref|YP_024059.1| - 6.3e-30 103.0 2.1 7e-30 102.8 2.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S28e Ribosomal_L24e PF01246.20 gi|48478354|ref|YP_024060.1| - 2e-25 88.8 2.8 2.1e-25 88.7 2.8 1.0 1 0 0 1 1 1 1 Ribosomal protein L24e zf-FCS PF06467.14 gi|48478354|ref|YP_024060.1| - 3.9e-07 29.9 1.1 6.2e-07 29.3 1.1 1.3 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif DUF2116 PF09889.9 gi|48478354|ref|YP_024060.1| - 0.0019 18.2 1.2 0.67 10.0 0.2 2.1 2 0 0 2 2 2 2 Uncharacterized protein containing a Zn-ribbon (DUF2116) YHS PF04945.13 gi|48478354|ref|YP_024060.1| - 0.003 17.6 0.2 0.005 16.9 0.2 1.3 1 0 0 1 1 1 1 YHS domain zf-FLZ PF04570.14 gi|48478354|ref|YP_024060.1| - 0.0065 15.9 1.5 0.014 14.9 1.5 1.5 1 1 0 1 1 1 1 zinc-finger of the FCS-type, C2-C2 VATC PF18716.1 gi|48478354|ref|YP_024060.1| - 0.011 15.5 3.8 0.044 13.6 3.8 1.9 1 1 0 1 1 1 0 Vms1-associating treble clef domain zf-C4_ClpX PF06689.13 gi|48478354|ref|YP_024060.1| - 0.057 13.3 0.2 0.057 13.3 0.2 1.9 2 0 0 2 2 2 0 ClpX C4-type zinc finger YacG PF03884.14 gi|48478354|ref|YP_024060.1| - 0.11 12.3 5.9 2.8 7.8 5.9 2.6 1 1 0 1 1 1 0 DNA gyrase inhibitor YacG NDK PF00334.19 gi|48478355|ref|YP_024061.1| - 2.3e-55 186.3 0.0 2.5e-55 186.2 0.0 1.0 1 0 0 1 1 1 1 Nucleoside diphosphate kinase GTP_EFTU PF00009.27 gi|48478356|ref|YP_024062.1| - 5.1e-31 107.7 0.2 1.2e-30 106.5 0.0 1.6 2 0 0 2 2 2 1 Elongation factor Tu GTP binding domain IF-2 PF11987.8 gi|48478356|ref|YP_024062.1| - 5.5e-20 71.5 2.7 1.8e-19 69.8 2.7 1.9 1 0 0 1 1 1 1 Translation-initiation factor 2 GTP_EFTU_D4 PF14578.6 gi|48478356|ref|YP_024062.1| - 4.5e-17 61.7 0.2 1.6e-16 60.0 0.2 2.0 1 0 0 1 1 1 1 Elongation factor Tu domain 4 GTP_EFTU_D2 PF03144.25 gi|48478356|ref|YP_024062.1| - 3.3e-08 33.8 6.1 0.00017 21.9 0.2 3.4 4 0 0 4 4 4 2 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|48478356|ref|YP_024062.1| - 1.2e-07 31.7 0.1 4.6e-07 29.9 0.1 2.0 1 0 0 1 1 1 1 50S ribosome-binding GTPase Roc PF08477.13 gi|48478356|ref|YP_024062.1| - 0.0061 16.8 0.0 0.028 14.6 0.0 2.1 2 0 0 2 2 2 1 Ras of Complex, Roc, domain of DAPkinase Dynamin_N PF00350.23 gi|48478356|ref|YP_024062.1| - 0.038 14.1 0.3 0.71 9.9 0.0 2.8 2 1 1 3 3 3 0 Dynamin family Na_Ca_ex PF01699.24 gi|48478357|ref|YP_024063.1| - 4.2e-14 52.8 43.3 1.9e-09 37.7 21.0 2.4 3 0 0 3 3 3 2 Sodium/calcium exchanger protein EST1_DNA_bind PF10373.9 gi|48478357|ref|YP_024063.1| - 0.13 11.7 0.9 0.21 11.1 0.9 1.3 1 0 0 1 1 1 0 Est1 DNA/RNA binding domain YwiC PF14256.6 gi|48478357|ref|YP_024063.1| - 0.22 11.8 4.4 0.16 12.3 0.4 2.5 2 0 0 2 2 2 0 YwiC-like protein DUF3188 PF11384.8 gi|48478357|ref|YP_024063.1| - 4.6 7.0 11.0 3.6 7.4 5.5 2.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3188) AdoMet_dc PF02675.15 gi|48478358|ref|YP_024064.1| - 7.8e-34 116.1 0.0 8.9e-34 115.9 0.0 1.0 1 0 0 1 1 1 1 S-adenosylmethionine decarboxylase HTH_5 PF01022.20 gi|48478359|ref|YP_024065.1| - 3.8e-06 26.7 0.0 6.4e-06 25.9 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HxlR PF01638.17 gi|48478359|ref|YP_024065.1| - 0.0001 22.1 0.3 0.057 13.3 0.0 3.1 3 0 0 3 3 3 1 HxlR-like helix-turn-helix HTH_24 PF13412.6 gi|48478359|ref|YP_024065.1| - 0.00012 21.5 0.1 0.00027 20.4 0.1 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|48478359|ref|YP_024065.1| - 0.0052 16.7 0.0 0.0093 15.8 0.0 1.3 1 0 0 1 1 1 1 MarR family DUF4423 PF14394.6 gi|48478359|ref|YP_024065.1| - 0.0056 16.4 0.1 0.015 15.0 0.0 1.7 2 0 0 2 2 2 1 Domain of unknown function (DUF4423) HTH_20 PF12840.7 gi|48478359|ref|YP_024065.1| - 0.0077 16.3 0.0 0.013 15.6 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_45 PF14947.6 gi|48478359|ref|YP_024065.1| - 0.0094 15.9 0.9 0.017 15.1 0.2 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix HTH_27 PF13463.6 gi|48478359|ref|YP_024065.1| - 0.026 15.0 0.0 0.079 13.5 0.0 1.7 2 0 0 2 2 2 0 Winged helix DNA-binding domain LexA_DNA_bind PF01726.16 gi|48478359|ref|YP_024065.1| - 0.094 12.5 0.0 0.22 11.3 0.0 1.6 1 0 0 1 1 1 0 LexA DNA binding domain TMP-TENI PF02581.17 gi|48478360|ref|YP_024066.1| - 2.9e-49 166.8 0.0 3.4e-49 166.6 0.0 1.0 1 0 0 1 1 1 1 Thiamine monophosphate synthase DUF561 PF04481.12 gi|48478360|ref|YP_024066.1| - 0.15 11.2 0.0 0.23 10.6 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF561) AIRS_C PF02769.22 gi|48478361|ref|YP_024067.1| - 5e-19 69.0 0.0 8e-19 68.3 0.0 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|48478361|ref|YP_024067.1| - 1.5e-09 38.4 0.0 2.7e-09 37.6 0.0 1.3 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain Phos_pyr_kin PF08543.12 gi|48478362|ref|YP_024068.1| - 4.1e-91 304.7 0.4 4.6e-91 304.6 0.4 1.0 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase PfkB PF00294.24 gi|48478362|ref|YP_024068.1| - 1.7e-14 53.8 0.0 2.3e-14 53.4 0.0 1.1 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Carb_kinase PF01256.17 gi|48478362|ref|YP_024068.1| - 4.1e-05 23.2 0.0 6e-05 22.6 0.0 1.3 1 0 0 1 1 1 1 Carbohydrate kinase MoeA_N PF03453.17 gi|48478363|ref|YP_024069.1| - 4.3e-29 101.3 0.0 6e-29 100.8 0.0 1.1 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|48478363|ref|YP_024069.1| - 1.5e-18 66.8 0.0 2.9e-18 65.9 0.0 1.5 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.15 gi|48478363|ref|YP_024069.1| - 0.00014 22.0 0.0 0.00039 20.5 0.0 1.8 1 0 0 1 1 1 1 MoeA C-terminal region (domain IV) DUF1071 PF06378.11 gi|48478363|ref|YP_024069.1| - 0.14 11.7 0.9 6.3 6.4 0.1 2.5 1 1 0 2 2 2 0 Protein of unknown function (DUF1071) MoeA_N PF03453.17 gi|48478364|ref|YP_024070.1| - 8.3e-29 100.4 0.0 1.2e-28 99.8 0.0 1.2 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|48478364|ref|YP_024070.1| - 2.3e-22 79.2 0.0 3.6e-22 78.6 0.0 1.3 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.15 gi|48478364|ref|YP_024070.1| - 3.9e-06 27.0 0.0 7.5e-06 26.0 0.0 1.5 1 0 0 1 1 1 1 MoeA C-terminal region (domain IV) NTP_transf_3 PF12804.7 gi|48478365|ref|YP_024071.1| - 9.8e-07 29.3 0.0 1.2e-06 29.0 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain CTP_transf_3 PF02348.19 gi|48478365|ref|YP_024071.1| - 0.00021 21.3 0.1 0.00076 19.5 0.1 2.1 1 1 0 1 1 1 1 Cytidylyltransferase 7TMR-DISM_7TM PF07695.11 gi|48478366|ref|YP_024072.1| - 0.13 12.1 28.6 0.16 11.9 28.6 1.0 1 0 0 1 1 1 0 7TM diverse intracellular signalling Peptidase_M1 PF01433.20 gi|48478367|ref|YP_024073.1| - 2.3e-73 246.4 2.8 2.3e-73 246.4 2.8 2.0 3 0 0 3 3 3 1 Peptidase family M1 domain Peptidase_M1_N PF17900.1 gi|48478367|ref|YP_024073.1| - 3.2e-30 105.7 0.3 1.4e-29 103.6 0.1 2.2 2 0 0 2 2 2 1 Peptidase M1 N-terminal domain ERAP1_C PF11838.8 gi|48478367|ref|YP_024073.1| - 2.3e-20 73.4 6.4 3.4e-20 72.8 6.4 1.2 1 0 0 1 1 1 1 ERAP1-like C-terminal domain DUF1735 PF08522.10 gi|48478367|ref|YP_024073.1| - 0.0092 16.6 1.3 0.25 12.0 0.9 3.0 2 0 0 2 2 2 1 Domain of unknown function (DUF1735) Nrap_D2 PF17403.2 gi|48478367|ref|YP_024073.1| - 0.066 13.0 1.7 3.5 7.4 0.3 2.5 2 0 0 2 2 2 0 Nrap protein PAP/OAS-like domain Pathogen_betaC1 PF09593.10 gi|48478367|ref|YP_024073.1| - 0.12 12.3 2.7 0.098 12.6 0.5 2.0 2 0 0 2 2 2 0 Beta-satellite pathogenicity beta C1 protein adh_short PF00106.25 gi|48478368|ref|YP_024074.1| - 0.0012 18.3 0.0 0.0018 17.8 0.0 1.3 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|48478368|ref|YP_024074.1| - 0.067 12.7 0.0 0.094 12.3 0.0 1.3 1 0 0 1 1 1 0 Enoyl-(Acyl carrier protein) reductase Aminotran_1_2 PF00155.21 gi|48478369|ref|YP_024075.1| - 1.3e-34 119.9 0.0 1.5e-34 119.7 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Alliinase_C PF04864.13 gi|48478369|ref|YP_024075.1| - 1.3e-07 30.8 0.1 1.8e-07 30.3 0.1 1.2 1 0 0 1 1 1 1 Allinase Fer4_5 PF12801.7 gi|48478371|ref|YP_024077.1| - 0.00044 20.2 0.6 0.00044 20.2 0.6 5.0 5 0 0 5 5 5 1 4Fe-4S binding domain Fer4_6 PF12837.7 gi|48478371|ref|YP_024077.1| - 0.00044 20.2 0.3 0.00044 20.2 0.3 2.6 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|48478371|ref|YP_024077.1| - 0.0011 19.5 7.8 0.0071 16.9 6.3 2.4 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|48478371|ref|YP_024077.1| - 0.014 15.6 8.0 0.07 13.3 5.7 2.3 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_11 PF13247.6 gi|48478371|ref|YP_024077.1| - 0.024 14.8 3.2 0.056 13.6 1.3 2.1 2 0 0 2 2 2 0 4Fe-4S dicluster domain DUF4428 PF14471.6 gi|48478371|ref|YP_024077.1| - 0.032 14.2 0.9 0.079 12.9 0.9 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4428) Fer4_10 PF13237.6 gi|48478371|ref|YP_024077.1| - 0.059 13.5 0.3 0.059 13.5 0.3 2.8 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4 PF00037.27 gi|48478371|ref|YP_024077.1| - 0.06 13.2 0.2 0.06 13.2 0.2 2.9 3 1 0 3 3 3 0 4Fe-4S binding domain Fer4_16 PF13484.6 gi|48478371|ref|YP_024077.1| - 0.54 11.2 5.5 0.95 10.4 0.1 2.9 3 0 0 3 3 3 0 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|48478371|ref|YP_024077.1| - 6.9 6.9 10.0 0.57 10.3 4.8 1.7 2 0 0 2 2 2 0 4Fe-4S dicluster domain DUF4191 PF13829.6 gi|48478372|ref|YP_024078.1| - 2.3 7.5 6.3 0.59 9.4 0.7 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4191) MFS_1 PF07690.16 gi|48478373|ref|YP_024079.1| - 1.9e-32 112.6 41.8 6.3e-30 104.3 33.4 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|48478373|ref|YP_024079.1| - 2.3e-08 33.4 12.5 2.3e-08 33.4 12.5 3.3 1 1 3 4 4 4 2 Sugar (and other) transporter YiaAB PF05360.14 gi|48478374|ref|YP_024080.1| - 0.078 13.2 2.9 7 7.0 0.5 2.2 2 0 0 2 2 2 0 yiaA/B two helix domain ATG22 PF11700.8 gi|48478374|ref|YP_024080.1| - 0.27 9.8 2.6 0.32 9.6 2.6 1.0 1 0 0 1 1 1 0 Vacuole effluxer Atg22 like PIRT PF15099.6 gi|48478374|ref|YP_024080.1| - 1.7 8.2 4.9 0.31 10.6 1.2 1.6 1 1 1 2 2 2 0 Phosphoinositide-interacting protein family DUF3040 PF11239.8 gi|48478374|ref|YP_024080.1| - 3.6 7.9 7.3 8.2 6.8 7.3 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF3040) TMEM238 PF15125.6 gi|48478374|ref|YP_024080.1| - 5 7.4 9.7 7.8 6.8 9.7 1.3 1 1 0 1 1 1 0 TMEM238 protein family DUF929 PF06053.11 gi|48478375|ref|YP_024081.1| - 1.9e-65 220.6 12.6 2.3e-65 220.4 12.6 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF929) COX1 PF00115.20 gi|48478376|ref|YP_024082.1| - 4.8e-106 355.2 60.3 4.8e-106 355.2 60.3 3.2 2 1 1 3 3 3 2 Cytochrome C and Quinol oxidase polypeptide I SoxE PF06525.11 gi|48478377|ref|YP_024083.1| - 8.9e-22 77.2 4.2 4.1e-21 75.0 4.2 2.0 1 1 0 1 1 1 1 Sulfocyanin (SoxE) domain COX2 PF00116.20 gi|48478378|ref|YP_024084.1| - 2.3e-16 59.7 2.9 1.1e-14 54.3 0.0 2.6 1 1 1 2 2 2 2 Cytochrome C oxidase subunit II, periplasmic domain ECF_trnsprt PF12822.7 gi|48478378|ref|YP_024084.1| - 0.0056 16.8 0.6 0.0082 16.3 0.6 1.3 1 0 0 1 1 1 1 ECF transporter, substrate-specific component DcuC PF03606.15 gi|48478378|ref|YP_024084.1| - 0.09 11.2 0.0 0.11 10.9 0.0 1.1 1 0 0 1 1 1 0 C4-dicarboxylate anaerobic carrier FtsX PF02687.21 gi|48478378|ref|YP_024084.1| - 0.094 13.2 0.9 0.25 11.8 0.9 1.7 1 1 0 1 1 1 0 FtsX-like permease family UbiA PF01040.18 gi|48478379|ref|YP_024085.1| - 7.3e-43 146.7 19.5 1e-42 146.2 19.5 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family QueC PF06508.13 gi|48478380|ref|YP_024086.1| - 1e-76 257.2 0.0 1.2e-76 256.9 0.0 1.1 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC ThiI PF02568.14 gi|48478380|ref|YP_024086.1| - 9.5e-05 22.1 0.0 0.00028 20.6 0.0 1.7 2 0 0 2 2 2 1 Thiamine biosynthesis protein (ThiI) Asn_synthase PF00733.21 gi|48478380|ref|YP_024086.1| - 0.0053 16.5 0.0 0.007 16.1 0.0 1.1 1 0 0 1 1 1 1 Asparagine synthase NAD_synthase PF02540.17 gi|48478380|ref|YP_024086.1| - 0.015 14.4 0.0 1.1 8.3 0.0 2.1 2 0 0 2 2 2 0 NAD synthase PAPS_reduct PF01507.19 gi|48478380|ref|YP_024086.1| - 0.018 15.1 0.0 0.074 13.1 0.0 1.9 1 1 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family ATP_bind_3 PF01171.20 gi|48478380|ref|YP_024086.1| - 0.026 14.3 0.0 0.23 11.2 0.0 2.0 2 0 0 2 2 2 0 PP-loop family Sugar_tr PF00083.24 gi|48478381|ref|YP_024087.1| - 4.2e-15 55.6 5.1 5.1e-15 55.3 5.1 1.1 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.16 gi|48478381|ref|YP_024087.1| - 1.2e-08 34.3 6.5 1.4e-08 34.1 6.5 1.1 1 0 0 1 1 1 1 Major Facilitator Superfamily TRI12 PF06609.13 gi|48478381|ref|YP_024087.1| - 0.0046 15.4 0.3 0.0054 15.2 0.3 1.1 1 0 0 1 1 1 1 Fungal trichothecene efflux pump (TRI12) MFS_3 PF05977.13 gi|48478381|ref|YP_024087.1| - 0.014 13.9 1.2 0.016 13.7 1.2 1.0 1 0 0 1 1 1 0 Transmembrane secretion effector Lipase_3 PF01764.25 gi|48478381|ref|YP_024087.1| - 0.091 12.6 0.1 0.11 12.3 0.1 1.2 1 0 0 1 1 1 0 Lipase (class 3) Gly-zipper_YMGG PF13441.6 gi|48478381|ref|YP_024087.1| - 0.14 11.9 5.3 0.25 11.1 4.6 1.8 2 1 0 2 2 2 0 YMGG-like Gly-zipper Gly-zipper_Omp PF13488.6 gi|48478381|ref|YP_024087.1| - 2 8.5 10.1 0.21 11.6 4.1 2.2 2 1 1 3 3 3 0 Glycine zipper Sugar_tr PF00083.24 gi|48478382|ref|YP_024088.1| - 4.7e-58 197.1 23.7 5.3e-58 197.0 23.7 1.0 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.16 gi|48478382|ref|YP_024088.1| - 1.3e-06 27.6 36.8 5.9e-05 22.2 29.4 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily WIYLD PF10440.9 gi|48478382|ref|YP_024088.1| - 0.19 11.5 0.1 0.4 10.5 0.1 1.4 1 0 0 1 1 1 0 Ubiquitin-binding WIYLD domain ALAD PF00490.21 gi|48478383|ref|YP_024089.1| - 1e-134 448.7 3.2 1.1e-134 448.6 3.2 1.0 1 0 0 1 1 1 1 Delta-aminolevulinic acid dehydratase NanE PF04131.14 gi|48478383|ref|YP_024089.1| - 0.0036 16.5 0.2 0.0081 15.4 0.2 1.6 1 0 0 1 1 1 1 Putative N-acetylmannosamine-6-phosphate epimerase GtrA PF04138.14 gi|48478385|ref|YP_024091.1| - 4.7e-18 65.5 11.1 7.5e-18 64.9 11.1 1.3 1 0 0 1 1 1 1 GtrA-like protein DUF3463 PF11946.8 gi|48478386|ref|YP_024092.1| - 6e-34 116.7 4.5 9.6e-34 116.1 4.5 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF3463) Radical_SAM PF04055.21 gi|48478386|ref|YP_024092.1| - 1.4e-16 61.3 0.0 2.4e-16 60.6 0.0 1.4 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|48478386|ref|YP_024092.1| - 7e-07 29.6 0.0 3.9e-06 27.2 0.0 2.0 1 1 1 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|48478386|ref|YP_024092.1| - 0.004 17.3 0.3 0.013 15.7 0.0 2.0 2 0 0 2 2 2 1 4Fe-4S single cluster domain SPASM PF13186.6 gi|48478386|ref|YP_024092.1| - 0.21 12.1 3.4 0.6 10.7 3.4 1.8 1 0 0 1 1 1 0 Iron-sulfur cluster-binding domain ELFV_dehydrog PF00208.21 gi|48478387|ref|YP_024093.1| - 2.1e-77 260.2 2.1 3.1e-77 259.6 2.1 1.3 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.18 gi|48478387|ref|YP_024093.1| - 1.9e-55 186.2 0.0 3.6e-55 185.3 0.0 1.5 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.19 gi|48478387|ref|YP_024093.1| - 0.0023 17.3 0.3 0.0047 16.3 0.3 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Gp_dh_N PF00044.24 gi|48478387|ref|YP_024093.1| - 0.039 14.3 0.1 0.083 13.2 0.1 1.6 1 0 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain PCNA_N PF00705.18 gi|48478388|ref|YP_024094.1| - 3.6e-16 59.0 0.4 2.4e-14 53.1 0.2 2.3 2 1 0 2 2 2 1 Proliferating cell nuclear antigen, N-terminal domain Rad1 PF02144.16 gi|48478388|ref|YP_024094.1| - 7.2e-07 28.5 1.4 0.0038 16.3 0.0 2.1 1 1 1 2 2 2 2 Repair protein Rad1/Rec1/Rad17 PCNA_C PF02747.15 gi|48478388|ref|YP_024094.1| - 1.2e-05 25.5 1.6 3.8e-05 23.9 0.2 2.3 2 1 0 2 2 2 1 Proliferating cell nuclear antigen, C-terminal domain Rad9 PF04139.13 gi|48478388|ref|YP_024094.1| - 0.011 15.2 0.0 0.014 14.9 0.0 1.4 1 1 0 1 1 1 0 Rad9 DNA_pol3_beta_2 PF02767.16 gi|48478388|ref|YP_024094.1| - 0.017 15.3 0.3 0.2 11.9 0.1 2.5 2 1 1 4 4 4 0 DNA polymerase III beta subunit, central domain 4HBT PF03061.22 gi|48478389|ref|YP_024095.1| - 2.8e-12 46.8 0.0 3.9e-12 46.4 0.0 1.2 1 0 0 1 1 1 1 Thioesterase superfamily 4HBT_3 PF13622.6 gi|48478389|ref|YP_024095.1| - 0.0073 16.6 0.0 0.0097 16.2 0.0 1.1 1 0 0 1 1 1 1 Thioesterase-like superfamily DUF4442 PF14539.6 gi|48478389|ref|YP_024095.1| - 0.018 15.2 0.0 0.025 14.7 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4442) Peripla_BP_2 PF01497.18 gi|48478390|ref|YP_024096.1| - 6.6e-27 94.6 0.0 8.4e-27 94.2 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein TssO PF17561.2 gi|48478390|ref|YP_024096.1| - 0.016 15.3 0.6 0.28 11.3 0.0 2.3 2 0 0 2 2 2 0 Type VI secretion system, TssO DUF4133 PF13571.6 gi|48478390|ref|YP_024096.1| - 0.11 12.9 0.9 6.5 7.2 0.5 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4133) FecCD PF01032.18 gi|48478391|ref|YP_024097.1| - 5e-81 272.1 34.6 6e-81 271.8 34.6 1.0 1 0 0 1 1 1 1 FecCD transport family ABC-3 PF00950.17 gi|48478391|ref|YP_024097.1| - 4.3e-10 39.5 19.9 4.3e-10 39.5 19.9 2.4 2 1 1 3 3 3 1 ABC 3 transport family ABC_tran PF00005.27 gi|48478392|ref|YP_024098.1| - 5.9e-27 94.8 0.0 8.8e-27 94.3 0.0 1.3 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|48478392|ref|YP_024098.1| - 2.4e-13 50.0 1.9 1.4e-12 47.6 1.9 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|48478392|ref|YP_024098.1| - 1.3e-12 48.2 4.0 8.3e-06 25.8 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|48478392|ref|YP_024098.1| - 7.1e-08 32.6 4.4 3.3e-05 23.8 3.1 2.1 1 1 1 2 2 2 2 AAA ATPase domain AAA_23 PF13476.6 gi|48478392|ref|YP_024098.1| - 2.3e-05 25.0 1.9 6.1e-05 23.6 1.2 1.9 2 0 0 2 2 2 1 AAA domain ATPase_2 PF01637.18 gi|48478392|ref|YP_024098.1| - 6.8e-05 22.9 2.2 0.00045 20.2 2.2 2.0 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_29 PF13555.6 gi|48478392|ref|YP_024098.1| - 9.4e-05 22.1 0.1 0.00024 20.8 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_14 PF13173.6 gi|48478392|ref|YP_024098.1| - 0.00046 20.2 0.6 0.0044 17.1 0.6 2.4 1 1 0 1 1 1 1 AAA domain T2SSE PF00437.20 gi|48478392|ref|YP_024098.1| - 0.00052 19.2 1.2 0.0018 17.4 0.0 2.1 2 0 0 2 2 2 1 Type II/IV secretion system protein AAA_22 PF13401.6 gi|48478392|ref|YP_024098.1| - 0.0028 17.9 0.1 0.0076 16.5 0.1 1.8 1 1 0 1 1 1 1 AAA domain ATP_bind_1 PF03029.17 gi|48478392|ref|YP_024098.1| - 0.0031 17.3 0.0 0.52 10.0 0.0 2.2 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein Rad17 PF03215.15 gi|48478392|ref|YP_024098.1| - 0.0034 17.3 0.5 0.13 12.2 0.5 2.2 1 1 0 1 1 1 1 Rad17 P-loop domain RsgA_GTPase PF03193.16 gi|48478392|ref|YP_024098.1| - 0.0038 17.2 0.0 0.009 15.9 0.0 1.6 1 0 0 1 1 1 1 RsgA GTPase AAA PF00004.29 gi|48478392|ref|YP_024098.1| - 0.0039 17.6 0.1 0.051 14.0 0.1 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|48478392|ref|YP_024098.1| - 0.0043 17.5 0.0 0.0066 16.9 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain NTPase_1 PF03266.15 gi|48478392|ref|YP_024098.1| - 0.0044 16.9 0.0 0.18 11.7 0.0 2.3 2 0 0 2 2 2 1 NTPase SbcCD_C PF13558.6 gi|48478392|ref|YP_024098.1| - 0.009 16.2 0.0 0.041 14.1 0.0 2.0 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_13 PF13166.6 gi|48478392|ref|YP_024098.1| - 0.0091 14.7 0.3 1.5 7.4 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_30 PF13604.6 gi|48478392|ref|YP_024098.1| - 0.021 14.5 0.0 0.054 13.2 0.0 1.6 2 1 1 3 3 2 0 AAA domain Adeno_IVa2 PF02456.15 gi|48478392|ref|YP_024098.1| - 0.022 13.6 0.3 1.8 7.3 0.0 2.1 2 0 0 2 2 2 0 Adenovirus IVa2 protein NACHT PF05729.12 gi|48478392|ref|YP_024098.1| - 0.023 14.6 0.0 0.05 13.5 0.0 1.6 2 0 0 2 2 2 0 NACHT domain KAP_NTPase PF07693.14 gi|48478392|ref|YP_024098.1| - 0.025 13.8 0.0 0.039 13.2 0.0 1.4 1 1 0 1 1 1 0 KAP family P-loop domain MMR_HSR1 PF01926.23 gi|48478392|ref|YP_024098.1| - 0.027 14.6 0.6 0.066 13.3 0.6 2.0 1 1 0 1 1 1 0 50S ribosome-binding GTPase RNA_helicase PF00910.22 gi|48478392|ref|YP_024098.1| - 0.033 14.6 0.1 0.23 11.9 0.0 2.3 2 1 0 2 2 2 0 RNA helicase cobW PF02492.19 gi|48478392|ref|YP_024098.1| - 0.039 13.5 0.1 0.095 12.3 0.0 1.7 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain NB-ARC PF00931.22 gi|48478392|ref|YP_024098.1| - 0.041 13.1 0.3 0.093 11.9 0.1 1.6 2 0 0 2 2 2 0 NB-ARC domain ABC_ATPase PF09818.9 gi|48478392|ref|YP_024098.1| - 0.05 12.4 0.6 0.34 9.6 0.1 2.0 2 0 0 2 2 2 0 Predicted ATPase of the ABC class Zeta_toxin PF06414.12 gi|48478392|ref|YP_024098.1| - 0.12 11.6 0.0 0.19 11.0 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin DUF790 PF05626.11 gi|48478393|ref|YP_024099.1| - 1.7e-65 221.2 0.1 2.8e-65 220.5 0.1 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF790) ResIII PF04851.15 gi|48478394|ref|YP_024100.1| - 1.3e-22 80.6 0.1 2.6e-22 79.6 0.1 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit ERCC3_RAD25_C PF16203.5 gi|48478394|ref|YP_024100.1| - 2e-17 63.2 0.0 4.4e-17 62.1 0.0 1.5 1 0 0 1 1 1 1 ERCC3/RAD25/XPB C-terminal helicase Helicase_C PF00271.31 gi|48478394|ref|YP_024100.1| - 1.4e-15 57.6 0.0 6.4e-15 55.5 0.0 2.0 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DEAD PF00270.29 gi|48478394|ref|YP_024100.1| - 1e-08 35.2 0.1 2.2e-08 34.0 0.1 1.6 1 1 0 1 1 1 1 DEAD/DEAH box helicase XPB_DRD PF18458.1 gi|48478394|ref|YP_024100.1| - 3.8e-06 26.7 0.6 9.5e-06 25.4 0.6 1.7 1 0 0 1 1 1 1 Xeroderma pigmentosum group B helicase damage recognition domain PK_C PF02887.16 gi|48478394|ref|YP_024100.1| - 0.15 12.3 0.1 0.43 10.8 0.0 1.8 2 0 0 2 2 2 0 Pyruvate kinase, alpha/beta domain ABM PF03992.16 gi|48478395|ref|YP_024101.1| - 2.7e-12 46.6 0.0 3.1e-12 46.4 0.0 1.1 1 0 0 1 1 1 1 Antibiotic biosynthesis monooxygenase SOR PF07682.11 gi|48478395|ref|YP_024101.1| - 0.00016 20.7 0.3 0.06 12.2 0.0 2.1 1 1 1 2 2 2 2 Sulphur oxygenase reductase DUF4188 PF13826.6 gi|48478395|ref|YP_024101.1| - 0.058 13.7 0.0 0.063 13.6 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4188) adh_short_C2 PF13561.6 gi|48478396|ref|YP_024102.1| - 9.2e-61 205.4 0.2 1.1e-60 205.1 0.2 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|48478396|ref|YP_024102.1| - 1.5e-50 171.4 0.4 1.8e-50 171.2 0.4 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|48478396|ref|YP_024102.1| - 1.2e-08 35.1 0.0 1.6e-08 34.6 0.0 1.2 1 0 0 1 1 1 1 KR domain Shikimate_DH PF01488.20 gi|48478396|ref|YP_024102.1| - 0.00021 21.4 0.2 0.027 14.5 0.2 2.6 2 1 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase NAD_binding_10 PF13460.6 gi|48478396|ref|YP_024102.1| - 0.0032 17.4 0.1 0.0061 16.5 0.1 1.5 1 1 0 1 1 1 1 NAD(P)H-binding Epimerase PF01370.21 gi|48478396|ref|YP_024102.1| - 0.0051 16.3 0.1 0.009 15.5 0.0 1.5 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family THF_DHG_CYH_C PF02882.19 gi|48478396|ref|YP_024102.1| - 0.0082 15.5 0.0 0.65 9.3 0.0 2.9 2 1 1 3 3 3 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Insulin_TMD PF17870.1 gi|48478397|ref|YP_024103.1| - 3 8.0 8.8 1 9.5 1.4 2.5 2 0 0 2 2 2 0 Insulin receptor trans-membrane segment DUF3185 PF11381.8 gi|48478398|ref|YP_024104.1| - 0.007 16.4 0.7 0.007 16.4 0.7 2.8 2 1 0 2 2 2 1 Protein of unknown function (DUF3185) DUF2371 PF10177.9 gi|48478398|ref|YP_024104.1| - 0.009 16.2 1.0 0.8 9.9 0.0 2.2 2 0 0 2 2 2 1 Uncharacterised conserved protein (DUF2371) Glycophorin_A PF01102.18 gi|48478398|ref|YP_024104.1| - 0.01 16.1 2.1 0.027 14.7 0.3 2.1 2 0 0 2 2 2 0 Glycophorin A Saf_2TM PF18303.1 gi|48478398|ref|YP_024104.1| - 0.053 13.1 3.1 1.3 8.6 0.5 2.1 2 0 0 2 2 2 0 SAVED-fused 2TM effector domain OppC_N PF12911.7 gi|48478398|ref|YP_024104.1| - 0.079 12.9 3.3 1.1 9.3 0.1 2.5 2 0 0 2 2 2 0 N-terminal TM domain of oligopeptide transport permease C Neurensin PF14927.6 gi|48478398|ref|YP_024104.1| - 0.14 11.9 1.7 11 5.7 0.1 2.2 2 0 0 2 2 2 0 Neurensin TMEM192 PF14802.6 gi|48478398|ref|YP_024104.1| - 0.28 10.3 1.4 0.46 9.5 0.1 1.8 2 0 0 2 2 2 0 TMEM192 family DUF3040 PF11239.8 gi|48478398|ref|YP_024104.1| - 4.1 7.7 7.4 9.7 6.5 2.5 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3040) HRG PF16954.5 gi|48478398|ref|YP_024104.1| - 5.9 7.4 8.9 6.3 7.3 2.0 2.7 2 0 0 2 2 2 0 Haem-transporter, endosomal/lysosomal, haem-responsive gene PHO4 PF01384.20 gi|48478399|ref|YP_024105.1| - 6.1e-24 84.7 29.1 2.3e-22 79.5 29.2 2.2 1 1 0 1 1 1 1 Phosphate transporter family PhoU_div PF01865.16 gi|48478400|ref|YP_024106.1| - 8.6e-09 35.0 13.7 1.5e-08 34.3 13.7 1.3 1 0 0 1 1 1 1 Protein of unknown function DUF47 DUF503 PF04456.12 gi|48478400|ref|YP_024106.1| - 0.0064 16.3 0.2 0.015 15.1 0.2 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF503) DUF948 PF06103.11 gi|48478400|ref|YP_024106.1| - 0.019 15.2 1.7 0.19 12.0 0.3 2.8 2 2 0 2 2 2 0 Bacterial protein of unknown function (DUF948) Glyoxalase PF00903.25 gi|48478400|ref|YP_024106.1| - 0.08 13.1 0.0 0.8 9.9 0.0 2.0 2 0 0 2 2 2 0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily SE PF08491.10 gi|48478400|ref|YP_024106.1| - 0.12 11.4 1.0 0.16 11.0 0.1 1.7 2 0 0 2 2 2 0 Squalene epoxidase Rx_N PF18052.1 gi|48478400|ref|YP_024106.1| - 0.23 11.7 4.9 0.15 12.4 0.5 2.2 2 1 0 2 2 2 0 Rx N-terminal domain LXG PF04740.12 gi|48478400|ref|YP_024106.1| - 0.3 10.8 10.3 1.1 9.0 0.7 2.3 1 1 1 2 2 2 0 LXG domain of WXG superfamily Radical_SAM PF04055.21 gi|48478401|ref|YP_024107.1| - 1.9e-14 54.4 0.0 6.3e-14 52.7 0.0 1.9 2 0 0 2 2 2 1 Radical SAM superfamily B12-binding PF02310.19 gi|48478401|ref|YP_024107.1| - 0.12 12.4 0.0 0.39 10.8 0.0 1.9 1 1 0 1 1 1 0 B12 binding domain Acetyltransf_3 PF13302.7 gi|48478402|ref|YP_024108.1| - 2.6e-14 54.1 0.0 3.1e-14 53.8 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|48478402|ref|YP_024108.1| - 1.7e-08 34.7 1.2 2.4e-08 34.3 1.2 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|48478402|ref|YP_024108.1| - 9e-06 25.9 0.0 1.2e-05 25.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family PRA-CH PF01502.18 gi|48478403|ref|YP_024109.1| - 4.8e-29 100.0 0.3 7e-29 99.5 0.3 1.2 1 0 0 1 1 1 1 Phosphoribosyl-AMP cyclohydrolase PRA-PH PF01503.17 gi|48478403|ref|YP_024109.1| - 1.6e-09 38.0 0.0 2.4e-09 37.5 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase His_biosynth PF00977.21 gi|48478404|ref|YP_024110.1| - 4.1e-74 248.9 0.2 5e-74 248.6 0.2 1.1 1 0 0 1 1 1 1 Histidine biosynthesis protein TMP-TENI PF02581.17 gi|48478404|ref|YP_024110.1| - 1.6e-06 27.6 0.0 0.02 14.2 0.0 2.1 2 0 0 2 2 2 2 Thiamine monophosphate synthase DHO_dh PF01180.21 gi|48478404|ref|YP_024110.1| - 2e-06 27.2 0.0 0.053 12.7 0.0 2.1 2 0 0 2 2 2 2 Dihydroorotate dehydrogenase Dus PF01207.17 gi|48478404|ref|YP_024110.1| - 5.2e-06 25.8 0.1 1.1e-05 24.7 0.1 1.6 2 0 0 2 2 2 1 Dihydrouridine synthase (Dus) ThiG PF05690.14 gi|48478404|ref|YP_024110.1| - 2.4e-05 23.8 0.1 0.15 11.4 0.0 2.2 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG NMO PF03060.15 gi|48478404|ref|YP_024110.1| - 0.00013 21.5 0.2 0.001 18.5 0.1 2.0 2 0 0 2 2 2 1 Nitronate monooxygenase IMPDH PF00478.25 gi|48478404|ref|YP_024110.1| - 0.0022 17.1 2.1 0.24 10.3 0.2 2.1 2 0 0 2 2 2 2 IMP dehydrogenase / GMP reductase domain PcrB PF01884.17 gi|48478404|ref|YP_024110.1| - 0.016 14.7 0.0 0.03 13.8 0.0 1.4 1 0 0 1 1 1 0 PcrB family G3P_antiterm PF04309.12 gi|48478404|ref|YP_024110.1| - 0.021 14.2 0.0 5.3 6.4 0.0 2.3 2 0 0 2 2 2 0 Glycerol-3-phosphate responsive antiterminator His_biosynth PF00977.21 gi|48478405|ref|YP_024111.1| - 5.3e-41 140.6 0.1 5e-40 137.4 0.1 2.0 1 1 0 1 1 1 1 Histidine biosynthesis protein FMN_dh PF01070.18 gi|48478405|ref|YP_024111.1| - 0.11 11.5 0.3 5.6 5.9 0.0 2.0 2 0 0 2 2 2 0 FMN-dependent dehydrogenase CutC PF03932.14 gi|48478405|ref|YP_024111.1| - 0.14 11.6 0.1 5.8 6.3 0.0 2.8 3 0 0 3 3 3 0 CutC family IMPDH PF00478.25 gi|48478405|ref|YP_024111.1| - 0.16 11.0 0.2 2 7.3 0.0 2.0 2 0 0 2 2 2 0 IMP dehydrogenase / GMP reductase domain GATase PF00117.28 gi|48478406|ref|YP_024112.1| - 3.1e-15 56.4 0.0 4.2e-15 56.0 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.14 gi|48478406|ref|YP_024112.1| - 0.0014 18.2 0.0 0.002 17.7 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain Peptidase_C26 PF07722.13 gi|48478406|ref|YP_024112.1| - 0.0092 15.8 0.2 1.3 8.7 0.1 2.6 2 1 0 2 2 2 2 Peptidase C26 IGPD PF00475.18 gi|48478407|ref|YP_024113.1| - 2.1e-34 118.9 0.1 2.5e-34 118.7 0.1 1.1 1 0 0 1 1 1 1 Imidazoleglycerol-phosphate dehydratase SAM_4 PF18017.1 gi|48478407|ref|YP_024113.1| - 0.049 13.6 0.0 0.094 12.7 0.0 1.5 1 0 0 1 1 1 0 SAM domain (Sterile alpha motif) Histidinol_dh PF00815.20 gi|48478408|ref|YP_024114.1| - 1e-124 416.7 0.0 1.7e-86 290.8 0.0 2.0 1 1 1 2 2 2 2 Histidinol dehydrogenase Cytochrom_B562 PF07361.11 gi|48478408|ref|YP_024114.1| - 0.016 15.9 1.1 0.021 15.5 0.0 1.7 2 0 0 2 2 2 0 Cytochrome b562 HisG PF01634.18 gi|48478409|ref|YP_024115.1| - 7.7e-34 117.0 0.0 9.4e-34 116.7 0.0 1.1 1 0 0 1 1 1 1 ATP phosphoribosyltransferase TFIIB PF00382.19 gi|48478410|ref|YP_024116.1| - 5.6e-41 138.4 4.1 8.2e-20 70.6 0.4 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|48478410|ref|YP_024116.1| - 2.9e-21 74.7 1.4 4.8e-21 74.0 1.4 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding Cyclin_C PF02984.19 gi|48478410|ref|YP_024116.1| - 2.3e-05 24.5 0.0 0.024 14.7 0.0 2.4 1 1 1 2 2 2 2 Cyclin, C-terminal domain RB_B PF01857.20 gi|48478410|ref|YP_024116.1| - 0.00013 22.0 0.1 0.00039 20.5 0.0 1.8 2 0 0 2 2 2 1 Retinoblastoma-associated protein B domain Sigma70_r4 PF04545.16 gi|48478410|ref|YP_024116.1| - 0.0012 18.3 0.5 0.017 14.6 0.4 2.7 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_AsnC-type PF13404.6 gi|48478410|ref|YP_024116.1| - 0.0033 17.2 0.2 0.0091 15.8 0.2 1.8 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain UPF0253 PF06786.12 gi|48478410|ref|YP_024116.1| - 0.014 15.6 0.2 0.38 11.1 0.1 2.4 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0253) Cyclin_N PF00134.23 gi|48478410|ref|YP_024116.1| - 0.016 15.0 1.7 0.035 13.9 0.1 2.2 2 1 0 2 2 2 0 Cyclin, N-terminal domain A2L_zn_ribbon PF08792.10 gi|48478410|ref|YP_024116.1| - 0.016 14.9 2.3 1.8 8.4 0.2 2.4 2 0 0 2 2 2 0 A2L zinc ribbon domain zf-ribbon_3 PF13248.6 gi|48478410|ref|YP_024116.1| - 0.023 14.1 3.2 0.15 11.5 3.2 2.1 1 1 0 1 1 1 0 zinc-ribbon domain zf-RRN7 PF11781.8 gi|48478410|ref|YP_024116.1| - 0.026 14.2 0.5 0.044 13.5 0.5 1.4 1 0 0 1 1 1 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Lar_restr_allev PF14354.6 gi|48478410|ref|YP_024116.1| - 0.032 14.6 0.1 0.067 13.6 0.1 1.6 1 0 0 1 1 1 0 Restriction alleviation protein Lar OrfB_Zn_ribbon PF07282.11 gi|48478410|ref|YP_024116.1| - 0.033 14.1 0.3 0.076 13.0 0.3 1.5 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Auto_anti-p27 PF06677.12 gi|48478410|ref|YP_024116.1| - 0.035 14.3 1.0 0.071 13.3 1.0 1.5 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Ribosomal_S27e PF01667.17 gi|48478410|ref|YP_024116.1| - 0.035 13.8 0.1 0.063 13.0 0.1 1.3 1 0 0 1 1 1 0 Ribosomal protein S27 zf-ACC PF17848.1 gi|48478410|ref|YP_024116.1| - 0.08 13.0 3.3 0.65 10.1 2.0 2.5 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain Zn_Tnp_IS1595 PF12760.7 gi|48478410|ref|YP_024116.1| - 0.086 12.8 0.3 0.22 11.5 0.3 1.6 1 0 0 1 1 1 0 Transposase zinc-ribbon domain HTH_11 PF08279.12 gi|48478410|ref|YP_024116.1| - 0.097 12.6 0.4 0.26 11.2 0.4 1.8 1 0 0 1 1 1 0 HTH domain zf-C4_Topoisom PF01396.19 gi|48478410|ref|YP_024116.1| - 0.12 12.2 1.4 0.25 11.2 1.4 1.6 1 0 0 1 1 1 0 Topoisomerase DNA binding C4 zinc finger Prim_Zn_Ribbon PF08273.12 gi|48478410|ref|YP_024116.1| - 0.12 12.6 0.2 0.3 11.4 0.2 1.6 1 0 0 1 1 1 0 Zinc-binding domain of primase-helicase DUF3053 PF11254.8 gi|48478410|ref|YP_024116.1| - 0.13 11.8 0.1 0.27 10.8 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3053) HTH_Tnp_ISL3 PF13542.6 gi|48478410|ref|YP_024116.1| - 0.13 11.7 0.3 0.3 10.5 0.3 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 Zn-ribbon_8 PF09723.10 gi|48478410|ref|YP_024116.1| - 0.18 12.0 2.0 0.74 10.0 0.2 2.3 1 1 1 2 2 2 0 Zinc ribbon domain UPF0147 PF03685.13 gi|48478410|ref|YP_024116.1| - 0.38 10.8 2.4 0.96 9.5 0.2 2.7 3 0 0 3 3 3 0 Uncharacterised protein family (UPF0147) PhnA_Zn_Ribbon PF08274.12 gi|48478410|ref|YP_024116.1| - 1.5 8.8 4.2 4.9 7.2 4.2 1.8 1 1 0 1 1 1 0 PhnA Zinc-Ribbon zinc_ribbon_2 PF13240.6 gi|48478410|ref|YP_024116.1| - 5 7.0 7.0 23 4.8 0.0 2.9 3 0 0 3 3 3 0 zinc-ribbon domain Gar1 PF04410.14 gi|48478411|ref|YP_024117.1| - 5.5e-07 29.5 0.2 6.3e-07 29.3 0.2 1.0 1 0 0 1 1 1 1 Gar1/Naf1 RNA binding region TFIIB PF00382.19 gi|48478412|ref|YP_024118.1| - 7e-36 122.1 3.3 2.8e-17 62.5 0.1 2.2 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|48478412|ref|YP_024118.1| - 2.7e-18 65.2 0.9 4.6e-18 64.5 0.9 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding Cyclin_C PF02984.19 gi|48478412|ref|YP_024118.1| - 0.00082 19.4 0.0 0.17 11.9 0.0 2.4 2 0 0 2 2 2 1 Cyclin, C-terminal domain Sigma70_r4 PF04545.16 gi|48478412|ref|YP_024118.1| - 0.0027 17.2 0.0 0.028 13.9 0.1 2.4 2 0 0 2 2 2 1 Sigma-70, region 4 Cyclin_N PF00134.23 gi|48478412|ref|YP_024118.1| - 0.0086 15.8 0.0 2.5 7.9 0.0 2.2 2 0 0 2 2 2 2 Cyclin, N-terminal domain RB_B PF01857.20 gi|48478412|ref|YP_024118.1| - 0.025 14.6 0.0 0.066 13.3 0.0 1.7 1 1 0 1 1 1 0 Retinoblastoma-associated protein B domain zf-ribbon_3 PF13248.6 gi|48478412|ref|YP_024118.1| - 0.036 13.5 4.4 0.18 11.2 2.9 2.6 2 1 0 2 2 2 0 zinc-ribbon domain TrmB PF01978.19 gi|48478412|ref|YP_024118.1| - 0.095 12.6 0.3 10 6.1 0.0 2.6 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB Lar_restr_allev PF14354.6 gi|48478412|ref|YP_024118.1| - 0.11 12.9 0.2 0.29 11.5 0.2 1.7 1 0 0 1 1 1 0 Restriction alleviation protein Lar Sigma70_r4_2 PF08281.12 gi|48478412|ref|YP_024118.1| - 0.14 11.8 0.9 0.37 10.5 0.1 2.1 2 0 0 2 2 2 0 Sigma-70, region 4 TMIE PF16038.5 gi|48478412|ref|YP_024118.1| - 0.2 11.5 0.2 0.2 11.5 0.2 1.8 2 0 0 2 2 1 0 TMIE protein zf-ACC PF17848.1 gi|48478412|ref|YP_024118.1| - 1.7 8.8 4.1 16 5.7 0.0 2.9 3 0 0 3 3 2 0 Acetyl-coA carboxylase zinc finger domain zf_UBZ PF18439.1 gi|48478412|ref|YP_024118.1| - 5.2 6.7 5.0 12 5.6 0.1 3.0 3 0 0 3 3 3 0 Ubiquitin-Binding Zinc Finger GCD14 PF08704.10 gi|48478413|ref|YP_024119.1| - 1.1e-15 58.0 0.0 1.9e-15 57.3 0.0 1.3 1 1 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit Methyltransf_31 PF13847.6 gi|48478413|ref|YP_024119.1| - 1e-07 31.8 0.0 1.5e-07 31.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|48478413|ref|YP_024119.1| - 1.7e-06 28.7 0.0 3e-06 27.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|48478413|ref|YP_024119.1| - 0.0002 20.9 0.1 0.00033 20.3 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_12 PF08242.12 gi|48478413|ref|YP_024119.1| - 0.00034 21.3 0.1 0.00075 20.2 0.1 1.6 1 1 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 gi|48478413|ref|YP_024119.1| - 0.00076 18.6 0.0 0.001 18.2 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase PCMT PF01135.19 gi|48478413|ref|YP_024119.1| - 0.0015 18.4 0.0 0.0022 17.8 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) CMAS PF02353.20 gi|48478413|ref|YP_024119.1| - 0.0044 16.4 0.0 0.0061 15.9 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_23 PF13489.6 gi|48478413|ref|YP_024119.1| - 0.0053 16.6 0.0 0.015 15.2 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|48478413|ref|YP_024119.1| - 0.013 16.1 0.0 0.022 15.4 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain UvrD_C_2 PF13538.6 gi|48478413|ref|YP_024119.1| - 0.033 14.0 0.0 0.071 13.0 0.0 1.5 1 0 0 1 1 1 0 UvrD-like helicase C-terminal domain GATase PF00117.28 gi|48478414|ref|YP_024120.1| - 2.9e-36 125.0 0.0 3.3e-36 124.9 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|48478414|ref|YP_024120.1| - 2.8e-13 50.1 0.0 2.2e-11 43.9 0.0 2.5 1 1 0 1 1 1 1 Peptidase C26 SNO PF01174.19 gi|48478414|ref|YP_024120.1| - 7.5e-07 29.2 0.1 1.7e-06 28.0 0.1 1.5 1 1 0 1 1 1 1 SNO glutamine amidotransferase family GATase_3 PF07685.14 gi|48478414|ref|YP_024120.1| - 0.011 15.3 0.1 0.068 12.8 0.1 2.0 1 1 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain DJ-1_PfpI PF01965.24 gi|48478414|ref|YP_024120.1| - 0.034 14.0 0.0 0.047 13.5 0.0 1.2 1 0 0 1 1 1 0 DJ-1/PfpI family Glycos_transf_2 PF00535.26 gi|48478415|ref|YP_024121.1| - 1.6e-25 89.9 0.0 2e-25 89.6 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|48478415|ref|YP_024121.1| - 1.5e-09 38.1 0.0 1.8e-09 37.8 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|48478415|ref|YP_024121.1| - 0.0065 16.0 0.0 0.012 15.1 0.0 1.4 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|48478415|ref|YP_024121.1| - 0.035 14.6 0.0 0.066 13.7 0.0 1.5 1 1 0 1 1 1 0 Glycosyl transferase family 2 MFS_1 PF07690.16 gi|48478416|ref|YP_024122.1| - 3e-28 98.8 60.4 4.8e-16 58.6 34.0 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|48478416|ref|YP_024122.1| - 1.1e-07 31.1 27.4 2e-07 30.2 27.4 1.4 1 1 0 1 1 1 1 MFS_1 like family MFS_3 PF05977.13 gi|48478416|ref|YP_024122.1| - 0.0064 14.9 5.2 0.42 8.9 0.8 2.1 2 0 0 2 2 2 2 Transmembrane secretion effector DEAD PF00270.29 gi|48478417|ref|YP_024123.1| - 3.7e-44 150.6 0.0 5.8e-44 149.9 0.0 1.3 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|48478417|ref|YP_024123.1| - 1e-25 90.2 0.7 1e-24 87.0 0.3 2.5 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|48478417|ref|YP_024123.1| - 9.4e-07 29.0 0.1 1.8e-06 28.0 0.0 1.5 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit CMS1 PF14617.6 gi|48478417|ref|YP_024123.1| - 0.0001 21.8 0.6 0.00023 20.6 0.4 1.7 1 1 0 1 1 1 1 U3-containing 90S pre-ribosomal complex subunit CobA_CobO_BtuR PF02572.15 gi|48478417|ref|YP_024123.1| - 0.11 12.7 0.1 0.26 11.6 0.1 1.7 1 1 0 1 1 1 0 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP SMC_N PF02463.19 gi|48478417|ref|YP_024123.1| - 8.2 5.8 6.4 0.58 9.6 0.1 2.2 4 0 0 4 4 4 0 RecF/RecN/SMC N terminal domain Radical_SAM_C PF16199.5 gi|48478418|ref|YP_024124.1| - 2.3e-27 94.8 0.1 5.9e-27 93.5 0.1 1.7 1 0 0 1 1 1 1 Radical_SAM C-terminal domain Radical_SAM PF04055.21 gi|48478418|ref|YP_024124.1| - 1.6e-20 74.2 0.0 8.5e-20 71.8 0.0 2.1 2 0 0 2 2 2 1 Radical SAM superfamily Acetyltransf_1 PF00583.25 gi|48478418|ref|YP_024124.1| - 3.9e-07 30.3 0.2 8.6e-07 29.2 0.2 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|48478418|ref|YP_024124.1| - 0.0001 22.2 0.0 0.00058 19.8 0.0 2.0 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Aldolase_II PF00596.21 gi|48478419|ref|YP_024125.1| - 4.9e-46 157.0 0.4 5.7e-46 156.8 0.4 1.0 1 0 0 1 1 1 1 Class II Aldolase and Adducin N-terminal domain DUF929 PF06053.11 gi|48478420|ref|YP_024126.1| - 3.5e-69 232.9 8.4 5.4e-69 232.3 8.4 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF929) Orf78 PF06024.12 gi|48478420|ref|YP_024126.1| - 0.0099 16.2 1.7 0.018 15.4 1.7 1.4 1 0 0 1 1 1 1 Orf78 (ac78) VMA21 PF09446.10 gi|48478420|ref|YP_024126.1| - 0.066 13.3 1.3 0.7 10.0 0.9 2.3 2 0 0 2 2 2 0 VMA21-like domain RIFIN PF02009.16 gi|48478420|ref|YP_024126.1| - 0.21 11.5 2.7 0.3 10.9 2.7 1.2 1 0 0 1 1 1 0 Rifin ETRAMP PF09716.10 gi|48478420|ref|YP_024126.1| - 2.3 8.4 9.2 4.8 7.3 9.2 1.4 1 0 0 1 1 1 0 Malarial early transcribed membrane protein (ETRAMP) NpwBP PF12622.7 gi|48478421|ref|YP_024127.1| - 0.056 14.2 0.3 0.13 13.0 0.3 1.6 1 0 0 1 1 1 0 mRNA biogenesis factor MFS_1 PF07690.16 gi|48478422|ref|YP_024128.1| - 3.3e-23 82.2 55.4 2.7e-13 49.6 13.5 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|48478422|ref|YP_024128.1| - 9.4e-07 28.0 21.4 1e-05 24.6 21.4 2.0 1 1 0 1 1 1 1 MFS_1 like family LacY_symp PF01306.19 gi|48478422|ref|YP_024128.1| - 0.00039 19.3 15.5 0.042 12.6 7.5 2.5 2 1 0 2 2 2 2 LacY proton/sugar symporter DUF5640 PF18692.1 gi|48478423|ref|YP_024129.1| - 0.32 11.1 6.9 3.9 7.6 0.2 2.9 2 1 1 3 3 3 0 Family of unknown function (DUF5640) GHMP_kinases_N PF00288.26 gi|48478424|ref|YP_024130.1| - 7.8e-08 32.5 0.0 1.6e-07 31.4 0.0 1.6 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|48478424|ref|YP_024130.1| - 1e-06 29.0 0.0 1e-06 29.0 0.0 2.4 3 0 0 3 3 3 1 GHMP kinases C terminal SAICAR_synt PF01259.18 gi|48478425|ref|YP_024131.1| - 3.2e-44 151.4 0.4 6e-44 150.6 0.4 1.4 1 0 0 1 1 1 1 SAICAR synthetase Pyrophosphatase PF00719.19 gi|48478426|ref|YP_024132.1| - 2.2e-53 180.3 1.1 2.5e-53 180.1 1.1 1.0 1 0 0 1 1 1 1 Inorganic pyrophosphatase DUF4431 PF14485.6 gi|48478426|ref|YP_024132.1| - 0.0074 16.1 0.0 0.012 15.4 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4431) XhlA PF10779.9 gi|48478428|ref|YP_024134.1| - 2.4 8.4 7.7 2 8.7 1.3 2.9 2 1 1 3 3 3 0 Haemolysin XhlA DUF4176 PF13780.6 gi|48478429|ref|YP_024135.1| - 0.0048 16.9 0.5 1.9 8.6 0.0 2.4 2 0 0 2 2 2 2 Domain of unknown function (DUF4176) CNP1 PF08750.11 gi|48478429|ref|YP_024135.1| - 0.083 12.9 0.0 0.15 12.0 0.0 1.4 1 0 0 1 1 1 0 CNP1-like family ETRAMP PF09716.10 gi|48478429|ref|YP_024135.1| - 0.16 12.1 3.9 0.29 11.2 3.7 1.6 1 1 0 1 1 1 0 Malarial early transcribed membrane protein (ETRAMP) MFS_1 PF07690.16 gi|48478431|ref|YP_024137.1| - 1e-47 162.8 84.2 3.5e-41 141.3 51.0 2.9 1 1 1 2 2 2 2 Major Facilitator Superfamily POR_N PF01855.19 gi|48478432|ref|YP_024138.1| - 2.9e-58 197.4 0.1 4.4e-58 196.8 0.1 1.2 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.18 gi|48478432|ref|YP_024138.1| - 1.4e-40 139.2 0.1 2.4e-40 138.5 0.1 1.4 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase PFOR_II PF17147.4 gi|48478432|ref|YP_024138.1| - 3.9e-10 39.9 0.0 8.3e-10 38.9 0.0 1.6 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|48478432|ref|YP_024138.1| - 4.1e-05 23.5 0.0 0.00017 21.5 0.0 2.0 2 0 0 2 2 2 1 Transketolase, C-terminal domain TPP_enzyme_C PF02775.21 gi|48478433|ref|YP_024139.1| - 6.4e-28 97.5 0.0 1.3e-27 96.5 0.0 1.5 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.8 gi|48478433|ref|YP_024139.1| - 2.1e-19 69.4 0.3 3.4e-19 68.7 0.3 1.3 1 0 0 1 1 1 1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal HTH_36 PF13730.6 gi|48478434|ref|YP_024140.1| - 0.095 12.7 0.1 3.2 7.8 0.1 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_38 PF13936.6 gi|48478434|ref|YP_024140.1| - 0.11 12.2 0.0 0.44 10.3 0.1 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain Amidinotransf PF02274.17 gi|48478435|ref|YP_024141.1| - 2e-44 152.1 1.2 2.3e-43 148.6 1.2 2.4 1 1 0 1 1 1 1 Amidinotransferase PAD_porph PF04371.15 gi|48478435|ref|YP_024141.1| - 0.17 11.1 0.2 1.4 8.1 0.2 2.2 1 1 0 1 1 1 0 Porphyromonas-type peptidyl-arginine deiminase tRNA-synt_2b PF00587.25 gi|48478436|ref|YP_024142.1| - 5.7e-27 94.8 0.0 9.1e-27 94.2 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.20 gi|48478436|ref|YP_024142.1| - 1.4e-16 60.4 0.0 2.8e-16 59.4 0.0 1.5 1 0 0 1 1 1 1 Anticodon binding domain ProRS-C_1 PF09180.11 gi|48478436|ref|YP_024142.1| - 1.7e-08 34.6 0.0 3.7e-08 33.5 0.0 1.6 1 0 0 1 1 1 1 Prolyl-tRNA synthetase, C-terminal GramPos_pilinBB PF16569.5 gi|48478436|ref|YP_024142.1| - 0.038 14.8 0.2 0.075 13.9 0.2 1.4 1 0 0 1 1 1 0 Gram-positive pilin backbone subunit 2, Cna-B-like domain DnaB_C PF03796.15 gi|48478436|ref|YP_024142.1| - 0.14 11.5 0.6 0.24 10.7 0.6 1.3 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain HAD PF12710.7 gi|48478437|ref|YP_024143.1| - 2.4e-13 50.9 0.0 3.6e-13 50.3 0.0 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|48478437|ref|YP_024143.1| - 7.1e-08 33.0 0.0 4.6e-05 23.8 0.0 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|48478437|ref|YP_024143.1| - 1.6e-06 28.3 1.9 6.4e-06 26.4 1.9 1.9 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|48478437|ref|YP_024143.1| - 4.3e-05 23.4 4.8 0.00012 22.0 3.0 2.3 1 1 1 2 2 2 1 haloacid dehalogenase-like hydrolase DUF2608 PF11019.8 gi|48478437|ref|YP_024143.1| - 0.021 14.3 1.3 0.14 11.7 0.6 2.2 3 0 0 3 3 3 0 Protein of unknown function (DUF2608) Hydrolase_6 PF13344.6 gi|48478437|ref|YP_024143.1| - 0.071 13.2 0.0 0.23 11.6 0.0 1.9 1 1 0 1 1 1 0 Haloacid dehalogenase-like hydrolase EF-hand_8 PF13833.6 gi|48478437|ref|YP_024143.1| - 0.57 10.1 3.9 4.9 7.1 0.0 3.5 4 0 0 4 4 4 0 EF-hand domain pair SUR7 PF06687.12 gi|48478438|ref|YP_024144.1| - 0.17 11.5 14.5 1.3 8.6 14.5 1.9 1 1 0 1 1 1 0 SUR7/PalI family MARVEL PF01284.23 gi|48478438|ref|YP_024144.1| - 9 6.3 14.7 21 5.2 14.9 1.5 1 1 0 1 1 1 0 Membrane-associating domain Semialdhyde_dh PF01118.24 gi|48478439|ref|YP_024145.1| - 2.7e-31 108.5 0.0 4.6e-31 107.8 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.18 gi|48478439|ref|YP_024145.1| - 1.1e-22 81.0 0.0 1.6e-22 80.5 0.0 1.2 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain DapB_N PF01113.20 gi|48478439|ref|YP_024145.1| - 0.04 14.0 0.0 0.083 13.0 0.0 1.6 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus AA_kinase PF00696.28 gi|48478440|ref|YP_024146.1| - 5.7e-31 108.0 0.1 9e-31 107.3 0.1 1.3 1 0 0 1 1 1 1 Amino acid kinase family Glyoxalase PF00903.25 gi|48478441|ref|YP_024147.1| - 2.9e-23 82.5 0.4 4.3e-14 52.8 0.1 2.1 2 0 0 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.6 gi|48478441|ref|YP_024147.1| - 3.2e-12 46.7 0.0 7.7e-05 22.9 0.0 2.3 2 0 0 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.6 gi|48478441|ref|YP_024147.1| - 0.0011 19.1 0.0 3 7.9 0.0 3.3 2 1 1 3 3 3 2 Glyoxalase-like domain Glyoxalase_5 PF14696.6 gi|48478441|ref|YP_024147.1| - 0.0015 18.7 0.1 0.021 15.0 0.0 2.3 2 0 0 2 2 2 1 Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal FAA_hydrolase PF01557.18 gi|48478442|ref|YP_024148.1| - 1.5e-46 158.8 0.0 1.8e-46 158.5 0.0 1.1 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family HgmA PF04209.13 gi|48478443|ref|YP_024149.1| - 3.9e-11 42.3 0.8 5.1e-11 41.9 0.8 1.2 1 0 0 1 1 1 1 homogentisate 1,2-dioxygenase Cupin_2 PF07883.11 gi|48478443|ref|YP_024149.1| - 0.019 14.6 0.1 0.084 12.6 0.0 2.1 2 0 0 2 2 2 0 Cupin domain Haem_oxygenas_2 PF14518.6 gi|48478444|ref|YP_024150.1| - 5.8e-29 101.1 0.0 7.4e-29 100.8 0.0 1.1 1 0 0 1 1 1 1 Iron-containing redox enzyme TENA_THI-4 PF03070.16 gi|48478444|ref|YP_024150.1| - 3.7e-11 43.2 0.0 1.3e-10 41.5 0.0 1.6 2 0 0 2 2 2 1 TENA/THI-4/PQQC family DUF3865 PF12981.7 gi|48478444|ref|YP_024150.1| - 2.3e-05 24.4 0.0 2.8e-05 24.1 0.0 1.1 1 0 0 1 1 1 1 Domain of Unknown Function with PDB structure (DUF3865) TubC_N PF18563.1 gi|48478445|ref|YP_024151.1| - 0.034 14.1 1.6 0.039 13.9 1.6 1.1 1 0 0 1 1 1 0 TubC N-terminal docking domain FliL PF03748.14 gi|48478445|ref|YP_024151.1| - 0.14 12.7 2.3 0.17 12.5 2.3 1.1 1 0 0 1 1 1 0 Flagellar basal body-associated protein FliL TMF_DNA_bd PF12329.8 gi|48478445|ref|YP_024151.1| - 0.19 11.7 13.8 1.2 9.2 3.5 2.0 2 0 0 2 2 2 0 TATA element modulatory factor 1 DNA binding BST2 PF16716.5 gi|48478445|ref|YP_024151.1| - 0.33 11.6 7.1 0.44 11.2 7.1 1.3 1 0 0 1 1 1 0 Bone marrow stromal antigen 2 DMPK_coil PF08826.10 gi|48478445|ref|YP_024151.1| - 0.37 10.9 10.3 0.7 10.1 10.3 1.5 1 1 0 1 1 1 0 DMPK coiled coil domain like DUF4337 PF14235.6 gi|48478445|ref|YP_024151.1| - 0.92 9.6 3.5 1 9.5 3.5 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4337) 60KD_IMP PF02096.20 gi|48478445|ref|YP_024151.1| - 1.9 8.4 4.0 2 8.3 4.0 1.1 1 0 0 1 1 1 0 60Kd inner membrane protein DNA_PPF PF02916.15 gi|48478446|ref|YP_024152.1| - 0.074 13.5 0.5 0.089 13.2 0.5 1.1 1 0 0 1 1 1 0 DNA polymerase processivity factor TcA_RBD PF18518.1 gi|48478446|ref|YP_024152.1| - 0.083 13.2 0.0 0.14 12.4 0.0 1.4 1 1 0 1 1 1 0 TcA receptor binding domain AAA_18 PF13238.6 gi|48478448|ref|YP_024154.1| - 3.9e-08 33.9 0.7 9.3e-08 32.7 0.7 1.6 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|48478448|ref|YP_024154.1| - 1.4e-05 25.4 0.0 1.8e-05 25.1 0.0 1.4 1 1 0 1 1 1 1 AAA domain CoaE PF01121.20 gi|48478448|ref|YP_024154.1| - 0.00033 20.4 0.0 0.00041 20.1 0.0 1.3 1 1 0 1 1 1 1 Dephospho-CoA kinase AAA_17 PF13207.6 gi|48478448|ref|YP_024154.1| - 0.0026 18.2 0.0 0.0044 17.4 0.0 1.5 1 1 1 2 2 2 1 AAA domain KTI12 PF08433.10 gi|48478448|ref|YP_024154.1| - 0.0098 15.4 0.0 0.016 14.7 0.0 1.4 1 1 0 1 1 1 1 Chromatin associated protein KTI12 MGS PF02142.22 gi|48478448|ref|YP_024154.1| - 0.05 13.8 0.0 0.059 13.6 0.0 1.2 1 0 0 1 1 1 0 MGS-like domain dNK PF01712.19 gi|48478448|ref|YP_024154.1| - 0.064 13.1 0.5 0.14 12.0 0.3 1.7 1 1 1 2 2 2 0 Deoxynucleoside kinase AAA_14 PF13173.6 gi|48478448|ref|YP_024154.1| - 0.083 12.9 1.4 0.21 11.6 1.4 1.7 1 1 0 1 1 1 0 AAA domain AAA PF00004.29 gi|48478448|ref|YP_024154.1| - 0.095 13.1 0.4 0.14 12.6 0.4 1.5 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) DUF1743 PF08489.11 gi|48478449|ref|YP_024155.1| - 6e-32 110.1 0.2 1e-31 109.4 0.2 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1743) C1_1 PF00130.22 gi|48478449|ref|YP_024155.1| - 0.011 15.6 0.2 0.02 14.8 0.2 1.3 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) DZR PF12773.7 gi|48478449|ref|YP_024155.1| - 0.091 12.8 1.2 0.16 12.0 1.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon Zf_RING PF16744.5 gi|48478449|ref|YP_024155.1| - 0.18 11.9 0.2 0.35 11.0 0.2 1.4 1 0 0 1 1 1 0 KIAA1045 RING finger zf-Mss51 PF13824.6 gi|48478449|ref|YP_024155.1| - 0.27 11.4 1.8 0.59 10.3 1.8 1.5 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-C3HC4 PF00097.25 gi|48478449|ref|YP_024155.1| - 1.7 8.6 3.7 3.7 7.5 3.7 1.6 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) Zn_ribbon_SprT PF17283.2 gi|48478449|ref|YP_024155.1| - 3.7 7.5 5.9 1 9.3 1.4 1.8 1 1 1 2 2 2 0 SprT-like zinc ribbon domain Prenyltransf PF01255.19 gi|48478450|ref|YP_024156.1| - 9.5e-78 260.8 0.1 1.1e-77 260.6 0.1 1.0 1 0 0 1 1 1 1 Putative undecaprenyl diphosphate synthase MTD PF01993.18 gi|48478450|ref|YP_024156.1| - 0.17 11.2 0.0 0.25 10.6 0.0 1.2 1 0 0 1 1 1 0 methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase Met_10 PF02475.16 gi|48478451|ref|YP_024157.1| - 1e-48 165.8 1.2 1.7e-48 165.0 1.2 1.3 1 0 0 1 1 1 1 Met-10+ like-protein Trm5_N PF18093.1 gi|48478451|ref|YP_024157.1| - 1.4e-10 40.9 0.2 3.1e-10 39.8 0.2 1.6 1 0 0 1 1 1 1 tRNA methyltransferase 5 N-terminal domain Cons_hypoth95 PF03602.15 gi|48478451|ref|YP_024157.1| - 7.6e-07 28.9 0.1 3.2e-06 26.9 0.0 2.1 2 1 0 2 2 2 1 Conserved hypothetical protein 95 MTS PF05175.14 gi|48478451|ref|YP_024157.1| - 7.8e-07 28.8 0.0 1.8e-06 27.6 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_25 PF13649.6 gi|48478451|ref|YP_024157.1| - 8.4e-07 29.6 0.0 3.9e-06 27.5 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain PrmA PF06325.13 gi|48478451|ref|YP_024157.1| - 3e-06 26.9 0.0 4.5e-06 26.3 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_15 PF09445.10 gi|48478451|ref|YP_024157.1| - 5.5e-06 26.1 0.2 1.2e-05 25.0 0.2 1.6 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_18 PF12847.7 gi|48478451|ref|YP_024157.1| - 0.00028 20.9 0.1 0.00065 19.7 0.1 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|48478451|ref|YP_024157.1| - 0.00038 20.3 0.4 0.00079 19.3 0.1 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltr_RsmB-F PF01189.17 gi|48478451|ref|YP_024157.1| - 0.00072 19.3 0.0 0.002 17.8 0.0 1.7 2 0 0 2 2 2 1 16S rRNA methyltransferase RsmB/F TRM PF02005.16 gi|48478451|ref|YP_024157.1| - 0.012 14.9 0.7 0.021 14.0 0.7 1.4 1 0 0 1 1 1 0 N2,N2-dimethylguanosine tRNA methyltransferase DNA_methylase PF00145.17 gi|48478451|ref|YP_024157.1| - 0.029 13.7 0.2 0.055 12.8 0.1 1.5 2 0 0 2 2 2 0 C-5 cytosine-specific DNA methylase Methyltransf_11 PF08241.12 gi|48478451|ref|YP_024157.1| - 0.052 14.2 0.0 0.16 12.7 0.0 1.8 2 0 0 2 2 2 0 Methyltransferase domain Methyltransf_23 PF13489.6 gi|48478451|ref|YP_024157.1| - 0.13 12.1 0.0 0.31 10.8 0.0 1.6 2 1 0 2 2 2 0 Methyltransferase domain DEAD PF00270.29 gi|48478452|ref|YP_024158.1| - 6.8e-19 68.3 0.0 1.3e-18 67.4 0.0 1.5 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|48478452|ref|YP_024158.1| - 7.9e-12 45.5 0.0 2.8e-11 43.7 0.0 1.9 1 0 0 1 1 1 1 Helicase conserved C-terminal domain HHH_5 PF14520.6 gi|48478452|ref|YP_024158.1| - 1.9e-11 44.4 0.0 8.5e-11 42.3 0.0 2.2 1 0 0 1 1 1 1 Helix-hairpin-helix domain ResIII PF04851.15 gi|48478452|ref|YP_024158.1| - 3.9e-11 43.3 0.0 1.1e-10 41.8 0.0 1.7 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit DNA_pol_lambd_f PF10391.9 gi|48478452|ref|YP_024158.1| - 2.7e-05 23.9 0.0 7.8e-05 22.4 0.0 1.8 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda HHH_2 PF12826.7 gi|48478452|ref|YP_024158.1| - 0.00028 20.9 0.3 0.0066 16.5 0.0 2.9 3 0 0 3 3 3 1 Helix-hairpin-helix motif Cdd1 PF11731.8 gi|48478452|ref|YP_024158.1| - 0.048 13.9 0.0 0.13 12.5 0.0 1.7 1 0 0 1 1 1 0 Pathogenicity locus Abhydrolase_3 PF07859.13 gi|48478453|ref|YP_024159.1| - 4.8e-63 212.8 0.0 5.9e-63 212.5 0.0 1.1 1 0 0 1 1 1 1 alpha/beta hydrolase fold Say1_Mug180 PF10340.9 gi|48478453|ref|YP_024159.1| - 4.4e-08 32.4 0.0 6.9e-08 31.7 0.0 1.3 1 0 0 1 1 1 1 Steryl acetyl hydrolase COesterase PF00135.28 gi|48478453|ref|YP_024159.1| - 7.4e-06 25.1 0.0 2.1e-05 23.6 0.0 1.6 1 1 0 1 1 1 1 Carboxylesterase family Peptidase_S9 PF00326.21 gi|48478453|ref|YP_024159.1| - 0.18 11.3 0.0 0.36 10.3 0.0 1.4 1 0 0 1 1 1 0 Prolyl oligopeptidase family ETF PF01012.21 gi|48478455|ref|YP_024161.1| - 5.6e-82 274.0 0.0 4.1e-43 147.4 0.0 2.2 2 0 0 2 2 2 2 Electron transfer flavoprotein domain ETF_alpha PF00766.19 gi|48478455|ref|YP_024161.1| - 3.5e-32 110.3 0.4 8.6e-32 109.0 0.4 1.7 1 0 0 1 1 1 1 Electron transfer flavoprotein FAD-binding domain DAO PF01266.24 gi|48478456|ref|YP_024162.1| - 3.5e-13 49.9 0.4 1.9e-05 24.4 0.1 2.1 1 1 0 2 2 2 2 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|48478456|ref|YP_024162.1| - 8.5e-08 31.3 1.8 1.3e-05 24.1 0.3 2.2 2 0 0 2 2 2 2 HI0933-like protein FAD_oxidored PF12831.7 gi|48478456|ref|YP_024162.1| - 1.6e-07 31.0 0.1 2.6e-07 30.3 0.1 1.3 1 1 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|48478456|ref|YP_024162.1| - 3.5e-07 29.7 1.8 2.9e-06 26.6 0.8 2.0 2 0 0 2 2 2 1 FAD binding domain GIDA PF01134.22 gi|48478456|ref|YP_024162.1| - 8e-07 28.5 2.0 0.00038 19.7 0.2 2.2 2 0 0 2 2 2 2 Glucose inhibited division protein A FAD_binding_3 PF01494.19 gi|48478456|ref|YP_024162.1| - 1e-06 28.3 0.2 1.5e-05 24.5 0.2 2.3 1 1 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.14 gi|48478456|ref|YP_024162.1| - 1.3e-06 27.9 2.3 5.1e-06 25.9 1.2 2.3 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|48478456|ref|YP_024162.1| - 5.9e-06 25.8 0.3 4e-05 23.0 0.2 2.0 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|48478456|ref|YP_024162.1| - 8.7e-06 25.9 0.1 1.8e-05 24.9 0.1 1.5 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.27 gi|48478456|ref|YP_024162.1| - 4.3e-05 24.0 0.1 0.0013 19.3 0.0 2.6 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|48478456|ref|YP_024162.1| - 5.1e-05 22.6 0.6 0.00067 19.0 0.6 2.2 1 1 0 1 1 1 1 Thi4 family GMC_oxred_N PF00732.19 gi|48478456|ref|YP_024162.1| - 0.0069 15.8 0.1 0.84 9.0 0.0 2.2 2 0 0 2 2 2 1 GMC oxidoreductase Trp_halogenase PF04820.14 gi|48478456|ref|YP_024162.1| - 0.033 13.1 1.0 2.8 6.7 0.2 2.5 2 1 0 2 2 2 0 Tryptophan halogenase NAD_binding_9 PF13454.6 gi|48478456|ref|YP_024162.1| - 0.047 13.7 0.8 5.9 6.9 0.2 2.3 2 0 0 2 2 2 0 FAD-NAD(P)-binding Lycopene_cycl PF05834.12 gi|48478456|ref|YP_024162.1| - 0.054 12.5 0.1 0.13 11.3 0.2 1.6 2 0 0 2 2 2 0 Lycopene cyclase protein ETF_QO PF05187.13 gi|48478457|ref|YP_024163.1| - 7.4e-12 45.3 1.8 9.2e-12 45.0 1.8 1.1 1 0 0 1 1 1 1 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_2 PF12797.7 gi|48478457|ref|YP_024163.1| - 8.2e-09 35.0 11.3 1.7e-05 24.6 2.1 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|48478457|ref|YP_024163.1| - 2.5e-07 31.2 21.3 0.0002 21.9 1.4 2.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|48478457|ref|YP_024163.1| - 3.7e-07 30.2 11.4 6.2e-07 29.4 11.4 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|48478457|ref|YP_024163.1| - 1.9e-06 27.9 9.4 7.8e-06 26.0 9.7 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|48478457|ref|YP_024163.1| - 9.8e-06 25.7 12.2 0.00065 20.0 3.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|48478457|ref|YP_024163.1| - 1.4e-05 25.4 4.9 0.0008 19.8 0.4 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|48478457|ref|YP_024163.1| - 6.3e-05 22.6 4.1 6.3e-05 22.6 4.1 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|48478457|ref|YP_024163.1| - 0.00023 21.1 15.5 0.014 15.4 2.8 2.6 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|48478457|ref|YP_024163.1| - 0.0018 19.1 9.9 0.0057 17.6 0.7 2.5 2 1 1 3 3 3 1 4Fe-4S double cluster binding domain Fer4_3 PF12798.7 gi|48478457|ref|YP_024163.1| - 0.0035 18.2 15.4 0.058 14.3 4.5 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain A2L_zn_ribbon PF08792.10 gi|48478457|ref|YP_024163.1| - 0.056 13.2 4.8 0.14 12.0 0.7 2.5 2 0 0 2 2 2 0 A2L zinc ribbon domain Fer4_21 PF14697.6 gi|48478457|ref|YP_024163.1| - 0.068 13.3 13.0 0.44 10.7 13.0 2.4 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|48478457|ref|YP_024163.1| - 0.11 13.0 3.0 0.11 13.0 3.0 2.6 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|48478457|ref|YP_024163.1| - 0.9 9.8 8.3 3 8.1 8.3 1.8 1 1 0 1 1 1 0 4Fe-4S dicluster domain NVEALA PF14055.6 gi|48478459|ref|YP_024165.1| - 1.7 8.7 4.5 0.98 9.4 0.2 2.9 3 0 0 3 3 3 0 NVEALA protein PadR PF03551.14 gi|48478460|ref|YP_024166.1| - 1.4e-12 47.4 0.0 1.9e-12 46.9 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_34 PF13601.6 gi|48478460|ref|YP_024166.1| - 0.00076 19.6 0.0 0.00088 19.4 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain YjcQ PF09639.10 gi|48478460|ref|YP_024166.1| - 0.0037 17.4 0.4 0.0059 16.8 0.4 1.3 1 0 0 1 1 1 1 YjcQ protein DUF505 PF04458.12 gi|48478460|ref|YP_024166.1| - 0.0089 14.5 0.0 0.012 14.1 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF505) HTH_45 PF14947.6 gi|48478460|ref|YP_024166.1| - 0.04 13.9 0.1 0.11 12.5 0.0 1.7 1 1 0 1 1 1 0 Winged helix-turn-helix TrmB PF01978.19 gi|48478460|ref|YP_024166.1| - 0.075 12.9 0.0 0.14 12.1 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Cdc6_C PF09079.11 gi|48478460|ref|YP_024166.1| - 0.089 12.8 0.0 0.15 12.1 0.0 1.3 1 0 0 1 1 1 0 CDC6, C terminal winged helix domain PadR PF03551.14 gi|48478461|ref|YP_024167.1| - 4.3e-13 49.0 0.1 7.5e-13 48.2 0.1 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family RTP PF02334.16 gi|48478461|ref|YP_024167.1| - 0.016 15.8 0.0 0.028 15.1 0.0 1.4 1 0 0 1 1 1 0 Replication terminator protein DUF4364 PF14277.6 gi|48478461|ref|YP_024167.1| - 0.031 14.0 0.0 0.044 13.5 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) SBP_bac_1 PF01547.25 gi|48478462|ref|YP_024168.1| - 3.7e-06 27.1 4.5 4.6e-06 26.8 4.5 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 gi|48478462|ref|YP_024168.1| - 0.00011 22.2 0.8 0.00014 21.8 0.8 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein BPD_transp_1 PF00528.22 gi|48478464|ref|YP_024170.1| - 4.1e-11 43.0 23.1 4.1e-11 43.0 23.1 2.0 1 1 1 2 2 2 2 Binding-protein-dependent transport system inner membrane component CbtB PF09489.10 gi|48478464|ref|YP_024170.1| - 7.3 6.8 6.9 1.5 9.0 0.1 3.1 3 0 0 3 3 3 0 Probable cobalt transporter subunit (CbtB) BPD_transp_1 PF00528.22 gi|48478465|ref|YP_024171.1| - 4e-17 62.5 21.7 4e-17 62.5 21.7 2.2 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component MotA_ExbB PF01618.16 gi|48478465|ref|YP_024171.1| - 0.087 12.6 1.3 0.22 11.3 1.3 1.7 1 0 0 1 1 1 0 MotA/TolQ/ExbB proton channel family ABC_tran PF00005.27 gi|48478466|ref|YP_024172.1| - 4.4e-34 117.9 0.0 7.4e-34 117.2 0.0 1.4 1 0 0 1 1 1 1 ABC transporter GlcV_C_terminal PF17847.1 gi|48478466|ref|YP_024172.1| - 1.2e-28 99.3 1.4 1.2e-28 99.3 1.4 2.6 3 0 0 3 3 3 1 Glucose ABC transporter C-terminal domain AAA_21 PF13304.6 gi|48478466|ref|YP_024172.1| - 5.3e-08 33.0 1.6 0.0039 17.1 0.1 3.0 2 2 1 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system OB_MalK PF17912.1 gi|48478466|ref|YP_024172.1| - 1.7e-05 25.5 0.1 0.0022 18.8 0.1 2.9 2 0 0 2 2 2 1 MalK OB fold domain SMC_N PF02463.19 gi|48478466|ref|YP_024172.1| - 0.0016 17.9 0.1 0.0075 15.7 0.1 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain CysA_C_terminal PF17850.1 gi|48478466|ref|YP_024172.1| - 0.0058 17.2 0.0 0.015 15.9 0.0 1.8 1 0 0 1 1 1 1 CysA C-terminal regulatory domain RsgA_GTPase PF03193.16 gi|48478466|ref|YP_024172.1| - 0.0065 16.4 0.0 0.013 15.4 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_23 PF13476.6 gi|48478466|ref|YP_024172.1| - 0.016 15.7 2.0 0.021 15.4 0.5 2.1 1 1 0 2 2 2 0 AAA domain AAA_29 PF13555.6 gi|48478466|ref|YP_024172.1| - 0.025 14.3 0.0 0.053 13.3 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA PF00004.29 gi|48478466|ref|YP_024172.1| - 0.029 14.8 0.1 0.45 10.9 0.0 2.3 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.6 gi|48478466|ref|YP_024172.1| - 0.048 13.4 0.0 0.098 12.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|48478466|ref|YP_024172.1| - 0.05 12.8 0.1 0.13 11.4 0.1 1.7 1 1 0 1 1 1 0 NB-ARC domain ATPase_2 PF01637.18 gi|48478466|ref|YP_024172.1| - 0.052 13.5 0.0 0.087 12.7 0.0 1.5 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_16 PF13191.6 gi|48478466|ref|YP_024172.1| - 0.063 13.7 0.0 0.15 12.4 0.0 1.6 2 0 0 2 2 2 0 AAA ATPase domain AAA_22 PF13401.6 gi|48478466|ref|YP_024172.1| - 0.15 12.4 0.2 0.91 9.8 0.0 2.0 2 0 0 2 2 2 0 AAA domain SbcCD_C PF13558.6 gi|48478466|ref|YP_024172.1| - 0.16 12.3 0.1 0.92 9.8 0.1 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_33 PF13671.6 gi|48478466|ref|YP_024172.1| - 0.23 11.6 0.5 1.2 9.3 0.5 2.0 1 1 0 1 1 1 0 AAA domain GATase_4 PF13230.6 gi|48478467|ref|YP_024173.1| - 0.0071 15.3 0.0 0.0091 14.9 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferases class-II OB_RNB PF08206.11 gi|48478467|ref|YP_024173.1| - 0.083 12.6 0.2 0.16 11.7 0.2 1.4 1 0 0 1 1 1 0 Ribonuclease B OB domain Acyl-CoA_dh_1 PF00441.24 gi|48478468|ref|YP_024174.1| - 2.1e-49 167.6 1.4 2.9e-49 167.1 1.4 1.2 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|48478468|ref|YP_024174.1| - 4.2e-28 98.3 0.0 8e-28 97.4 0.0 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.19 gi|48478468|ref|YP_024174.1| - 3.7e-27 94.4 0.0 6.3e-27 93.6 0.0 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 gi|48478468|ref|YP_024174.1| - 2e-23 83.1 0.1 3.3e-23 82.4 0.1 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain HpaB_N PF11794.8 gi|48478468|ref|YP_024174.1| - 0.0035 17.1 0.3 0.016 14.9 0.3 1.9 1 1 0 1 1 1 1 4-hydroxyphenylacetate 3-hydroxylase N terminal AgrD PF05931.11 gi|48478468|ref|YP_024174.1| - 0.08 13.0 0.1 0.29 11.2 0.0 2.0 2 0 0 2 2 2 0 Staphylococcal AgrD protein Asparaginase PF00710.20 gi|48478469|ref|YP_024175.1| - 4.4e-47 160.1 0.0 5.9e-47 159.7 0.0 1.2 1 0 0 1 1 1 1 Asparaginase, N-terminal Asparaginase_C PF17763.1 gi|48478469|ref|YP_024175.1| - 1.2e-22 80.3 0.0 2.1e-22 79.5 0.0 1.4 1 0 0 1 1 1 1 Glutaminase/Asparaginase C-terminal domain GatD_N PF18195.1 gi|48478469|ref|YP_024175.1| - 6.8e-14 50.9 2.5 1.4e-13 49.9 2.5 1.6 1 0 0 1 1 1 1 GatD N-terminal domain GatB_N PF02934.15 gi|48478470|ref|YP_024176.1| - 3.3e-63 213.6 0.0 5.2e-63 213.0 0.0 1.2 1 0 0 1 1 1 1 GatB/GatE catalytic domain GAD PF02938.14 gi|48478470|ref|YP_024176.1| - 0.0016 18.6 0.0 0.005 17.0 0.0 1.9 1 0 0 1 1 1 1 GAD domain GatB_Yqey PF02637.18 gi|48478470|ref|YP_024176.1| - 0.029 14.3 2.3 0.063 13.2 2.3 1.6 1 0 0 1 1 1 0 GatB domain TatD_DNase PF01026.21 gi|48478470|ref|YP_024176.1| - 0.13 11.7 0.0 0.31 10.4 0.0 1.6 1 0 0 1 1 1 0 TatD related DNase WhiA_N PF10298.9 gi|48478470|ref|YP_024176.1| - 0.33 11.0 1.9 2.1 8.4 0.1 3.0 3 1 0 3 3 3 0 WhiA N-terminal LAGLIDADG-like domain GnsAB_toxin PF08178.11 gi|48478470|ref|YP_024176.1| - 1.4 8.9 4.1 5.9 6.9 0.3 2.7 2 0 0 2 2 2 0 GnsA/GnsB toxin of bacterial toxin-antitoxin system p450 PF00067.22 gi|48478471|ref|YP_024177.1| - 2.1e-31 109.2 0.0 3e-21 75.7 0.0 3.2 3 0 0 3 3 3 3 Cytochrome P450 Glyco_tranf_2_5 PF13712.6 gi|48478471|ref|YP_024177.1| - 0.098 12.3 0.1 0.17 11.5 0.1 1.3 1 0 0 1 1 1 0 Glycosyltransferase like family Oxidored_q4 PF00507.19 gi|48478472|ref|YP_024178.1| - 6.1e-20 71.2 1.7 6.1e-20 71.2 1.7 1.9 2 0 0 2 2 2 1 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 Tmemb_9 PF05434.11 gi|48478472|ref|YP_024178.1| - 0.2 11.5 1.6 0.51 10.2 0.1 2.0 2 0 0 2 2 2 0 TMEM9 DUF4870 PF09685.10 gi|48478472|ref|YP_024178.1| - 0.49 10.5 8.8 1.7 8.8 0.4 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4870) DUF485 PF04341.12 gi|48478472|ref|YP_024178.1| - 3.6 7.6 10.2 0.66 10.0 1.4 2.8 3 0 0 3 3 3 0 Protein of unknown function, DUF485 Oxidored_q6 PF01058.22 gi|48478473|ref|YP_024179.1| - 1.3e-21 76.7 0.1 1.7e-21 76.4 0.1 1.1 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Complex1_30kDa PF00329.19 gi|48478474|ref|YP_024180.1| - 2e-37 128.5 0.1 2.4e-37 128.3 0.1 1.1 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit DUF2513 PF10711.9 gi|48478474|ref|YP_024180.1| - 0.019 15.3 0.6 2.3 8.5 0.1 2.3 1 1 1 2 2 2 0 Hypothetical protein (DUF2513) KIP1 PF07765.12 gi|48478474|ref|YP_024180.1| - 0.045 13.9 0.4 0.11 12.6 0.4 1.6 1 0 0 1 1 1 0 KIP1-like protein Complex1_49kDa PF00346.19 gi|48478475|ref|YP_024181.1| - 7.2e-88 294.2 0.1 7.1e-86 287.7 0.1 2.2 1 1 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NADHdh PF00146.21 gi|48478476|ref|YP_024182.1| - 1.2e-88 297.3 22.6 1.4e-88 297.1 22.6 1.0 1 0 0 1 1 1 1 NADH dehydrogenase Fer4_7 PF12838.7 gi|48478477|ref|YP_024183.1| - 3.5e-13 49.9 30.9 1.4e-08 35.2 11.0 2.0 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4 PF00037.27 gi|48478477|ref|YP_024183.1| - 5.1e-12 45.1 10.9 6.1e-06 25.8 3.8 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|48478477|ref|YP_024183.1| - 7.3e-11 42.9 6.4 3.1e-05 24.8 1.3 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_8 PF13183.6 gi|48478477|ref|YP_024183.1| - 1.7e-09 38.0 7.7 2.7e-09 37.4 7.7 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|48478477|ref|YP_024183.1| - 2.7e-09 37.0 4.1 8.7e-05 22.6 0.5 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|48478477|ref|YP_024183.1| - 6.1e-09 35.9 20.7 1.1e-07 31.8 11.0 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|48478477|ref|YP_024183.1| - 8e-08 32.3 8.1 2.1e-05 24.6 11.1 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|48478477|ref|YP_024183.1| - 1.1e-06 28.5 13.6 0.0019 18.2 4.4 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|48478477|ref|YP_024183.1| - 5.4e-06 26.2 11.7 0.00045 20.1 1.2 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|48478477|ref|YP_024183.1| - 2.1e-05 25.0 11.1 0.00014 22.3 11.1 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|48478477|ref|YP_024183.1| - 0.0022 18.4 11.2 0.053 14.1 0.9 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_3 PF12798.7 gi|48478477|ref|YP_024183.1| - 0.004 18.0 16.2 0.084 13.9 4.3 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.6 gi|48478477|ref|YP_024183.1| - 0.0044 17.5 12.4 0.067 13.7 2.9 2.5 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_18 PF13746.6 gi|48478477|ref|YP_024183.1| - 0.026 14.7 10.4 0.13 12.4 1.2 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|48478477|ref|YP_024183.1| - 0.098 13.4 3.6 0.63 10.8 0.1 2.4 2 0 0 2 2 2 0 4Fe-4S single cluster domain Sar8_2 PF03058.14 gi|48478477|ref|YP_024183.1| - 0.15 12.6 0.2 0.15 12.6 0.2 2.1 1 1 1 2 2 2 0 Sar8.2 family Fer4_22 PF17179.4 gi|48478477|ref|YP_024183.1| - 0.28 12.1 12.5 2.1 9.3 2.1 2.4 1 1 2 3 3 3 0 4Fe-4S dicluster domain AFP PF02420.15 gi|48478477|ref|YP_024183.1| - 0.52 10.8 11.7 1.6 9.3 3.4 2.5 2 0 0 2 2 2 0 Insect antifreeze protein repeat Oxidored_q3 PF00499.20 gi|48478478|ref|YP_024184.1| - 1.8e-15 57.0 12.0 1.8e-15 57.0 12.0 2.0 1 1 1 2 2 2 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 Peptidase_U4 PF03419.13 gi|48478478|ref|YP_024184.1| - 3.3 6.9 15.8 3.7 6.8 15.8 1.0 1 0 0 1 1 1 0 Sporulation factor SpoIIGA Oxidored_q3 PF00499.20 gi|48478479|ref|YP_024185.1| - 2.3e-09 37.1 4.8 2.5e-09 37.0 4.8 1.0 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 NVEALA PF14055.6 gi|48478479|ref|YP_024185.1| - 0.076 13.0 1.0 1.6 8.7 0.6 2.2 2 0 0 2 2 2 0 NVEALA protein Oxidored_q2 PF00420.24 gi|48478480|ref|YP_024186.1| - 2.6e-14 52.7 13.4 3.5e-14 52.3 13.4 1.1 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Phage_holin_3_5 PF16085.5 gi|48478480|ref|YP_024186.1| - 0.29 11.3 4.9 0.38 10.9 4.9 1.3 1 1 0 1 1 1 0 Bacteriophage holin Hol, superfamily III Proton_antipo_M PF00361.20 gi|48478481|ref|YP_024187.1| - 5.8e-46 157.0 36.0 5.8e-46 157.0 36.0 3.1 2 1 0 2 2 2 1 Proton-conducting membrane transporter Phage_Mu_Gp45 PF06890.12 gi|48478482|ref|YP_024188.1| - 0.14 11.9 0.0 0.2 11.4 0.0 1.3 1 0 0 1 1 1 0 Bacteriophage Mu Gp45 protein TA0956 PF11513.8 gi|48478483|ref|YP_024189.1| - 3.6e-53 178.4 4.8 4e-53 178.3 4.8 1.0 1 0 0 1 1 1 1 Thermoplasma acidophilum protein TA0956 Acetyltransf_19 PF18015.1 gi|48478483|ref|YP_024189.1| - 0.0019 18.4 0.2 0.0041 17.3 0.2 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain CdiI_2 PF18593.1 gi|48478483|ref|YP_024189.1| - 0.013 16.2 0.1 0.4 11.4 0.0 2.2 2 0 0 2 2 2 0 CdiI immunity protein tRNA-synt_2 PF00152.20 gi|48478484|ref|YP_024190.1| - 1.3e-86 290.6 0.0 1.5e-86 290.3 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.25 gi|48478484|ref|YP_024190.1| - 1.1e-14 54.2 0.4 2e-14 53.3 0.4 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.20 gi|48478484|ref|YP_024190.1| - 0.035 13.6 0.2 1.9 7.9 0.0 2.8 3 0 0 3 3 3 0 tRNA synthetases class II core domain (F) URO-D PF01208.17 gi|48478485|ref|YP_024191.1| - 5.3e-88 295.5 0.0 5.9e-88 295.3 0.0 1.0 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) UMPH-1 PF05822.12 gi|48478485|ref|YP_024191.1| - 0.016 14.7 0.0 1.5 8.2 0.0 2.2 2 0 0 2 2 2 0 Pyrimidine 5'-nucleotidase (UMPH-1) DUF915 PF06028.11 gi|48478485|ref|YP_024191.1| - 0.083 12.2 0.4 0.14 11.5 0.4 1.3 1 0 0 1 1 1 0 Alpha/beta hydrolase of unknown function (DUF915) DNA_gyraseB PF00204.25 gi|48478486|ref|YP_024192.1| - 5.7e-46 156.2 2.1 1.2e-45 155.1 0.1 2.3 3 0 0 3 3 3 1 DNA gyrase B DNA_gyraseB_C PF00986.21 gi|48478486|ref|YP_024192.1| - 2.1e-30 104.7 0.3 4e-30 103.8 0.3 1.5 1 0 0 1 1 1 1 DNA gyrase B subunit, carboxyl terminus Toprim PF01751.22 gi|48478486|ref|YP_024192.1| - 9.9e-22 77.1 0.0 3.3e-21 75.4 0.0 2.0 1 0 0 1 1 1 1 Toprim domain HATPase_c PF02518.26 gi|48478486|ref|YP_024192.1| - 6.2e-19 68.6 0.0 1.9e-18 67.0 0.0 1.9 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.6 gi|48478486|ref|YP_024192.1| - 0.00046 20.0 0.0 0.0011 18.9 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Toprim_4 PF13662.6 gi|48478486|ref|YP_024192.1| - 0.11 13.0 0.4 1.5 9.3 0.2 2.7 2 0 0 2 2 2 0 Toprim domain DNA_topoisoIV PF00521.20 gi|48478487|ref|YP_024193.1| - 2.4e-160 534.1 2.2 2.4e-160 534.1 2.2 1.6 2 0 0 2 2 2 1 DNA gyrase/topoisomerase IV, subunit A DNA_gyraseA_C PF03989.13 gi|48478487|ref|YP_024193.1| - 1.5e-49 165.2 15.9 2.5e-10 39.6 0.3 6.8 6 0 0 6 6 6 6 DNA gyrase C-terminal domain, beta-propeller P5CR_dimer PF14748.6 gi|48478488|ref|YP_024194.1| - 4.2e-34 116.9 0.4 7.2e-34 116.1 0.4 1.4 1 0 0 1 1 1 1 Pyrroline-5-carboxylate reductase dimerisation F420_oxidored PF03807.17 gi|48478488|ref|YP_024194.1| - 2.5e-14 53.6 0.0 4.7e-14 52.8 0.0 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent IlvN PF07991.12 gi|48478488|ref|YP_024194.1| - 5.5e-06 26.1 0.0 7.9e-06 25.5 0.0 1.3 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain NAD_binding_2 PF03446.15 gi|48478488|ref|YP_024194.1| - 1.5e-05 25.2 0.0 7.8e-05 22.9 0.0 2.1 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase ApbA PF02558.16 gi|48478488|ref|YP_024194.1| - 8.3e-05 22.3 0.4 0.00063 19.4 0.4 2.1 1 1 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_Gly3P_dh_N PF01210.23 gi|48478488|ref|YP_024194.1| - 0.013 15.5 0.1 1.9 8.4 0.0 2.5 2 1 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus PDH PF02153.17 gi|48478488|ref|YP_024194.1| - 0.028 13.4 0.0 0.99 8.3 0.0 2.1 1 1 1 2 2 2 0 Prephenate dehydrogenase PglD_N PF17836.1 gi|48478488|ref|YP_024194.1| - 0.067 13.8 0.4 6.2 7.5 0.0 2.6 2 0 0 2 2 2 0 PglD N-terminal domain Sacchrp_dh_NADP PF03435.18 gi|48478488|ref|YP_024194.1| - 0.13 12.5 0.0 0.28 11.4 0.0 1.7 1 1 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain Homoserine_dh PF00742.19 gi|48478489|ref|YP_024195.1| - 6.6e-30 104.3 0.8 1.1e-29 103.6 0.4 1.5 2 0 0 2 2 2 1 Homoserine dehydrogenase NAD_binding_3 PF03447.16 gi|48478489|ref|YP_024195.1| - 2e-09 38.1 0.0 3.3e-09 37.4 0.0 1.4 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain ELFV_dehydrog PF00208.21 gi|48478489|ref|YP_024195.1| - 0.0011 18.8 0.1 0.0021 17.8 0.1 1.5 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase HHH_4 PF14490.6 gi|48478489|ref|YP_024195.1| - 0.053 13.5 0.0 0.15 12.0 0.0 1.7 1 0 0 1 1 1 0 Helix-hairpin-helix containing domain tRNA_anti-codon PF01336.25 gi|48478490|ref|YP_024196.1| - 0.00018 21.4 0.0 0.00036 20.4 0.0 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain RPA_C PF08784.11 gi|48478490|ref|YP_024196.1| - 0.0099 16.5 0.1 0.017 15.7 0.1 1.3 1 0 0 1 1 1 1 Replication protein A C terminal HTH_45 PF14947.6 gi|48478490|ref|YP_024196.1| - 0.021 14.8 1.7 0.25 11.3 0.0 2.8 3 0 0 3 3 3 0 Winged helix-turn-helix RuvA_C PF07499.13 gi|48478490|ref|YP_024196.1| - 0.048 14.1 0.0 0.12 12.9 0.0 1.7 1 1 0 1 1 1 0 RuvA, C-terminal domain tRNA_anti-codon PF01336.25 gi|48478491|ref|YP_024197.1| - 8.5e-10 38.5 4.9 0.0029 17.6 0.6 3.6 3 0 0 3 3 3 3 OB-fold nucleic acid binding domain CDC24_OB3 PF17244.2 gi|48478491|ref|YP_024197.1| - 0.0015 18.3 0.1 0.67 9.6 0.0 2.9 3 0 0 3 3 3 2 Cell division control protein 24, OB domain 3 DUF99 PF01949.16 gi|48478492|ref|YP_024198.1| - 0.092 12.2 0.0 0.38 10.1 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function DUF99 DNA_pol_B_3 PF08408.10 gi|48478492|ref|YP_024198.1| - 0.14 12.4 0.7 0.5 10.6 0.1 2.0 1 1 2 3 3 3 0 DNA polymerase family B viral insert NMD3 PF04981.13 gi|48478493|ref|YP_024199.1| - 1.1e-38 133.1 0.9 1.7e-38 132.5 0.9 1.3 1 0 0 1 1 1 1 NMD3 family DZR PF12773.7 gi|48478493|ref|YP_024199.1| - 0.023 14.7 2.8 0.048 13.7 1.0 2.0 2 0 0 2 2 2 0 Double zinc ribbon Zn-ribbon_8 PF09723.10 gi|48478493|ref|YP_024199.1| - 0.04 14.0 2.7 0.55 10.4 0.7 2.5 2 0 0 2 2 2 0 Zinc ribbon domain zf-RRN7 PF11781.8 gi|48478493|ref|YP_024199.1| - 0.041 13.6 0.7 5.2 6.8 0.1 2.6 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 CpXC PF14353.6 gi|48478493|ref|YP_024199.1| - 0.091 12.8 0.2 0.69 10.0 0.2 2.4 1 1 0 1 1 1 0 CpXC protein Colicin_E5 PF12106.8 gi|48478493|ref|YP_024199.1| - 0.14 12.5 1.3 8.2 6.8 0.1 2.7 2 0 0 2 2 2 0 Colicin E5 ribonuclease domain zf-ribbon_3 PF13248.6 gi|48478493|ref|YP_024199.1| - 0.16 11.4 2.9 1.9 8.0 0.2 2.5 2 0 0 2 2 2 0 zinc-ribbon domain Rpr2 PF04032.16 gi|48478493|ref|YP_024199.1| - 0.5 10.7 2.4 22 5.4 0.0 2.8 2 1 1 3 3 3 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain DUF3627 PF12299.8 gi|48478493|ref|YP_024199.1| - 0.69 10.0 7.3 3.7 7.7 1.8 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3627) zf-TFIIB PF13453.6 gi|48478493|ref|YP_024199.1| - 1.1 8.6 6.1 0.23 10.8 1.0 2.1 2 0 0 2 2 2 0 Transcription factor zinc-finger CxC4 PF18717.1 gi|48478493|ref|YP_024199.1| - 1.5 8.7 4.8 0.96 9.3 1.0 2.4 3 0 0 3 3 3 0 CxC4 like cysteine cluster associated with KDZ transposases Thioredox_DsbH PF03190.15 gi|48478494|ref|YP_024200.1| - 2.6e-68 229.1 1.2 3e-68 228.9 0.2 1.6 2 0 0 2 2 2 1 Protein of unknown function, DUF255 Thioredoxin_7 PF13899.6 gi|48478494|ref|YP_024200.1| - 6.1e-09 35.9 0.0 1.6e-08 34.6 0.0 1.8 1 0 0 1 1 1 1 Thioredoxin-like Glyco_hydro_127 PF07944.12 gi|48478494|ref|YP_024200.1| - 2.4e-06 26.3 1.4 0.00018 20.2 0.0 2.2 2 0 0 2 2 2 2 Beta-L-arabinofuranosidase, GH127 Glyco_hydro_88 PF07470.13 gi|48478494|ref|YP_024200.1| - 3e-06 26.6 5.4 0.00087 18.5 0.3 2.9 2 1 0 2 2 2 2 Glycosyl Hydrolase Family 88 C5-epim_C PF06662.13 gi|48478494|ref|YP_024200.1| - 3.9e-05 23.2 6.9 0.014 14.9 0.4 3.6 2 1 1 3 3 3 3 D-glucuronyl C5-epimerase C-terminus GlcNAc_2-epim PF07221.11 gi|48478494|ref|YP_024200.1| - 0.00037 19.9 0.2 0.053 12.8 0.1 2.3 2 0 0 2 2 2 2 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) Glyco_hydro_76 PF03663.14 gi|48478494|ref|YP_024200.1| - 0.0083 15.7 3.3 0.052 13.0 0.1 2.3 2 0 0 2 2 2 1 Glycosyl hydrolase family 76 Pec_lyase PF09492.10 gi|48478494|ref|YP_024200.1| - 4.9 6.4 8.3 0.2 10.9 0.7 2.2 2 1 0 2 2 2 0 Pectic acid lyase His_Phos_1 PF00300.22 gi|48478495|ref|YP_024201.1| - 6.3e-34 117.4 0.0 2.9e-33 115.2 0.0 1.8 1 1 0 1 1 1 1 Histidine phosphatase superfamily (branch 1) Amidohydro_1 PF01979.20 gi|48478496|ref|YP_024202.1| - 7.6e-18 64.9 0.0 2.2e-17 63.4 0.0 1.7 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|48478496|ref|YP_024202.1| - 0.0045 16.5 0.0 2.2 7.6 0.0 2.1 2 0 0 2 2 2 2 Amidohydrolase family DUF4431 PF14485.6 gi|48478496|ref|YP_024202.1| - 0.071 12.9 0.0 0.18 11.6 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4431) Hydrolase_3 PF08282.12 gi|48478497|ref|YP_024203.1| - 3.1e-23 82.8 4.1 6.4e-16 58.9 1.2 2.0 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase S6PP PF05116.13 gi|48478497|ref|YP_024203.1| - 4.8e-10 39.4 0.2 3.9e-09 36.4 0.0 2.0 2 0 0 2 2 2 1 Sucrose-6F-phosphate phosphohydrolase Hydrolase PF00702.26 gi|48478497|ref|YP_024203.1| - 6.3e-06 26.6 1.2 0.014 15.7 0.1 2.2 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|48478497|ref|YP_024203.1| - 0.00018 21.9 0.4 0.18 12.2 0.0 2.7 2 1 1 3 3 3 2 haloacid dehalogenase-like hydrolase Trehalose_PPase PF02358.16 gi|48478497|ref|YP_024203.1| - 0.00024 20.3 0.1 0.0024 17.0 0.0 2.0 2 0 0 2 2 2 1 Trehalose-phosphatase HAD_2 PF13419.6 gi|48478497|ref|YP_024203.1| - 0.0023 18.1 0.4 2.6 8.1 0.0 2.8 2 1 0 2 2 2 2 Haloacid dehalogenase-like hydrolase DUF2608 PF11019.8 gi|48478497|ref|YP_024203.1| - 0.017 14.6 2.7 0.35 10.3 0.7 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2608) Hydrolase_6 PF13344.6 gi|48478497|ref|YP_024203.1| - 0.12 12.5 0.2 0.73 10.0 0.1 2.0 2 1 0 2 2 2 0 Haloacid dehalogenase-like hydrolase Rpr2 PF04032.16 gi|48478498|ref|YP_024204.1| - 7.1e-05 23.0 2.9 0.00026 21.2 2.9 1.9 1 1 0 1 1 1 1 RNAse P Rpr2/Rpp21/SNM1 subunit domain PB1 PF00564.24 gi|48478498|ref|YP_024204.1| - 0.012 15.5 0.1 0.025 14.5 0.0 1.5 2 0 0 2 2 2 0 PB1 domain CRM1_repeat PF18777.1 gi|48478498|ref|YP_024204.1| - 0.087 12.4 0.0 0.14 11.7 0.0 1.4 1 0 0 1 1 1 0 Chromosome region maintenance or exportin repeat zf-DNL PF05180.12 gi|48478498|ref|YP_024204.1| - 0.15 12.0 2.9 0.31 11.0 2.9 1.6 1 1 0 1 1 1 0 DNL zinc finger MMPL PF03176.15 gi|48478500|ref|YP_024206.1| - 4.5e-71 239.5 10.3 2.7e-35 121.9 0.6 2.9 3 0 0 3 3 3 2 MMPL family SspB PF04386.13 gi|48478500|ref|YP_024206.1| - 0.0067 16.3 0.1 0.011 15.6 0.1 1.2 1 0 0 1 1 1 1 Stringent starvation protein B Endonuclease_5 PF04493.14 gi|48478501|ref|YP_024207.1| - 3.5e-33 115.0 0.0 8e-33 113.8 0.0 1.5 1 1 0 1 1 1 1 Endonuclease V DNA_binding_1 PF01035.20 gi|48478501|ref|YP_024207.1| - 5.1e-21 74.6 0.0 9.1e-21 73.8 0.0 1.4 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain Desulfoferrod_N PF06397.12 gi|48478502|ref|YP_024208.1| - 0.016 14.8 1.3 0.022 14.4 0.1 1.8 2 0 0 2 2 2 0 Desulfoferrodoxin, N-terminal domain Aminotran_5 PF00266.19 gi|48478503|ref|YP_024209.1| - 2.1e-28 99.3 0.0 3.5e-28 98.6 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V DsrH PF04077.12 gi|48478503|ref|YP_024209.1| - 0.11 12.6 0.0 0.24 11.5 0.0 1.5 1 0 0 1 1 1 0 DsrH like protein TP_methylase PF00590.20 gi|48478504|ref|YP_024210.1| - 9.5e-33 113.9 0.0 1.1e-32 113.7 0.0 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases TP_methylase PF00590.20 gi|48478505|ref|YP_024211.1| - 6.8e-36 124.2 0.0 8.5e-36 123.9 0.0 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases TP_methylase PF00590.20 gi|48478506|ref|YP_024212.1| - 3e-11 43.7 0.0 6.3e-11 42.6 0.0 1.5 1 1 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases MTS PF05175.14 gi|48478506|ref|YP_024212.1| - 1.8e-05 24.3 0.0 0.003 17.1 0.0 2.5 3 0 0 3 3 3 1 Methyltransferase small domain PCMT PF01135.19 gi|48478506|ref|YP_024212.1| - 5.3e-05 23.1 0.0 0.0001 22.1 0.0 1.4 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_18 PF12847.7 gi|48478506|ref|YP_024212.1| - 0.00089 19.2 0.1 0.013 15.5 0.0 2.2 2 0 0 2 2 2 1 Methyltransferase domain Met_10 PF02475.16 gi|48478506|ref|YP_024212.1| - 0.0019 18.0 0.0 0.007 16.1 0.0 2.0 2 0 0 2 2 2 1 Met-10+ like-protein Methyltransf_4 PF02390.17 gi|48478506|ref|YP_024212.1| - 0.0022 17.5 0.0 0.026 14.0 0.0 2.6 3 0 0 3 3 3 1 Putative methyltransferase FtsJ PF01728.19 gi|48478506|ref|YP_024212.1| - 0.032 14.3 0.0 0.087 12.9 0.0 1.7 1 1 0 1 1 1 0 FtsJ-like methyltransferase Bin3 PF06859.12 gi|48478506|ref|YP_024212.1| - 0.047 14.3 0.0 0.14 12.8 0.0 1.7 1 0 0 1 1 1 0 Bicoid-interacting protein 3 (Bin3) DOT1 PF08123.13 gi|48478506|ref|YP_024212.1| - 0.048 13.2 0.0 0.1 12.1 0.0 1.5 1 0 0 1 1 1 0 Histone methylation protein DOT1 Methyltransf_31 PF13847.6 gi|48478506|ref|YP_024212.1| - 0.075 12.8 0.0 0.59 9.9 0.0 2.3 2 0 0 2 2 2 0 Methyltransferase domain PrmA PF06325.13 gi|48478506|ref|YP_024212.1| - 0.081 12.3 0.0 0.15 11.4 0.0 1.5 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Peptidase_S31 PF05578.12 gi|48478506|ref|YP_024212.1| - 0.21 11.1 0.0 16 4.9 0.0 2.5 3 0 0 3 3 3 0 Pestivirus NS3 polyprotein peptidase S31 TP_methylase PF00590.20 gi|48478507|ref|YP_024213.1| - 2.2e-37 129.1 0.0 3e-37 128.6 0.0 1.2 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases MFS_1 PF07690.16 gi|48478508|ref|YP_024214.1| - 2.6e-47 161.4 32.0 2.6e-47 161.4 32.0 1.4 2 0 0 2 2 2 1 Major Facilitator Superfamily ILVD_EDD PF00920.21 gi|48478509|ref|YP_024215.1| - 1.5e-200 667.2 2.4 1.7e-200 667.0 2.4 1.0 1 0 0 1 1 1 1 Dehydratase family 2-Hacid_dh_C PF02826.19 gi|48478510|ref|YP_024216.1| - 2e-60 203.2 0.0 2.8e-60 202.7 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|48478510|ref|YP_024216.1| - 2.9e-25 88.5 0.0 3.5e-25 88.2 0.0 1.1 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.15 gi|48478510|ref|YP_024216.1| - 9.4e-06 25.9 0.0 2e-05 24.8 0.0 1.6 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase Gp_dh_N PF00044.24 gi|48478510|ref|YP_024216.1| - 0.15 12.4 0.7 0.31 11.4 0.7 1.7 1 1 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|48478510|ref|YP_024216.1| - 0.16 12.6 0.1 0.78 10.4 0.1 2.2 1 1 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent DUF5617 PF18493.1 gi|48478513|ref|YP_024219.1| - 0.011 15.8 2.4 0.025 14.7 2.4 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF5617) DUF4147 PF13660.6 gi|48478514|ref|YP_024220.1| - 2.7e-56 190.7 0.0 3.6e-56 190.3 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4147) MOFRL PF05161.13 gi|48478514|ref|YP_024220.1| - 2.2e-27 95.4 0.4 4.5e-27 94.4 0.4 1.5 1 0 0 1 1 1 1 MOFRL family Capsule_synth PF05159.14 gi|48478514|ref|YP_024220.1| - 0.08 12.4 0.0 0.14 11.6 0.0 1.3 1 0 0 1 1 1 0 Capsule polysaccharide biosynthesis protein eRF1_2 PF03464.15 gi|48478515|ref|YP_024221.1| - 6.4e-42 143.0 0.1 1e-41 142.3 0.1 1.3 1 0 0 1 1 1 1 eRF1 domain 2 eRF1_3 PF03465.15 gi|48478515|ref|YP_024221.1| - 7e-27 94.1 0.0 2.7e-26 92.3 0.0 2.0 2 0 0 2 2 2 1 eRF1 domain 3 eRF1_1 PF03463.15 gi|48478515|ref|YP_024221.1| - 2.3e-16 59.9 0.0 3.6e-16 59.3 0.0 1.3 1 0 0 1 1 1 1 eRF1 domain 1 acVLRF1 PF18859.1 gi|48478515|ref|YP_024221.1| - 6.4e-14 52.4 0.0 1.4e-13 51.3 0.0 1.5 1 0 0 1 1 1 1 Actinobacteria/chloroflexi VLRF1 release factor baeRF_family10 PF18854.1 gi|48478515|ref|YP_024221.1| - 4.7e-11 43.1 0.0 7.6e-11 42.4 0.0 1.3 1 0 0 1 1 1 1 Bacterial archaeo-eukaryotic release factor family 10 DUF3640 PF12342.8 gi|48478515|ref|YP_024221.1| - 0.0091 15.7 0.0 0.023 14.4 0.0 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF3640) IF3_N PF05198.16 gi|48478515|ref|YP_024221.1| - 0.11 12.8 0.1 1.9 8.8 0.0 2.6 2 0 0 2 2 2 0 Translation initiation factor IF-3, N-terminal domain UME PF08064.13 gi|48478515|ref|YP_024221.1| - 0.17 11.8 0.0 0.42 10.6 0.0 1.6 1 0 0 1 1 1 0 UME (NUC010) domain AA_kinase PF00696.28 gi|48478516|ref|YP_024222.1| - 2e-28 99.6 1.0 1.1e-27 97.1 1.0 1.8 1 1 0 1 1 1 1 Amino acid kinase family Hfq PF17209.3 gi|48478516|ref|YP_024222.1| - 0.13 11.9 0.4 11 5.8 0.1 2.6 2 0 0 2 2 2 0 Hfq protein NTP_transf_3 PF12804.7 gi|48478517|ref|YP_024223.1| - 7.4e-08 32.9 0.0 8.9e-08 32.6 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain His_Phos_1 PF00300.22 gi|48478518|ref|YP_024224.1| - 1.4e-31 109.8 0.0 1.7e-31 109.4 0.0 1.1 1 0 0 1 1 1 1 Histidine phosphatase superfamily (branch 1) SBP_bac_5 PF00496.22 gi|48478519|ref|YP_024225.1| - 7.1e-73 245.7 8.4 9.6e-73 245.3 8.4 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle BPD_transp_1 PF00528.22 gi|48478520|ref|YP_024226.1| - 1.8e-33 115.8 14.5 1.8e-33 115.8 14.5 2.4 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|48478521|ref|YP_024227.1| - 3.5e-13 49.7 19.8 3.5e-13 49.7 19.8 2.0 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|48478521|ref|YP_024227.1| - 1e-06 28.6 1.4 1e-06 28.6 1.4 2.9 3 1 0 3 3 3 1 N-terminal TM domain of oligopeptide transport permease C ABC_tran PF00005.27 gi|48478522|ref|YP_024228.1| - 1.7e-26 93.3 0.0 2.4e-26 92.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|48478522|ref|YP_024228.1| - 1.7e-19 70.1 0.0 2.9e-19 69.3 0.0 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|48478522|ref|YP_024228.1| - 1.1e-10 41.9 1.1 7.9e-08 32.5 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|48478522|ref|YP_024228.1| - 3.3e-06 26.7 1.7 5.2e-05 22.8 1.7 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain ABC_ATPase PF09818.9 gi|48478522|ref|YP_024228.1| - 3.7e-05 22.7 2.5 0.042 12.7 0.2 2.4 2 1 0 2 2 2 2 Predicted ATPase of the ABC class AAA_29 PF13555.6 gi|48478522|ref|YP_024228.1| - 0.00035 20.2 0.1 0.00081 19.1 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|48478522|ref|YP_024228.1| - 0.0028 18.1 0.0 0.0043 17.4 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|48478522|ref|YP_024228.1| - 0.0036 17.7 0.6 0.032 14.7 0.6 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) NB-ARC PF00931.22 gi|48478522|ref|YP_024228.1| - 0.0076 15.5 0.3 0.015 14.5 0.1 1.5 2 0 0 2 2 2 1 NB-ARC domain MobB PF03205.14 gi|48478522|ref|YP_024228.1| - 0.019 14.9 0.1 0.034 14.1 0.1 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B PRK PF00485.18 gi|48478522|ref|YP_024228.1| - 0.02 14.6 0.1 0.03 14.1 0.1 1.2 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family NTPase_1 PF03266.15 gi|48478522|ref|YP_024228.1| - 0.024 14.6 0.1 0.043 13.7 0.1 1.4 1 0 0 1 1 1 0 NTPase AAA_13 PF13166.6 gi|48478522|ref|YP_024228.1| - 0.024 13.3 0.8 0.14 10.8 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.6 gi|48478522|ref|YP_024228.1| - 0.026 14.8 0.5 0.21 11.9 0.7 2.4 2 1 0 2 2 2 0 AAA domain TsaE PF02367.17 gi|48478522|ref|YP_024228.1| - 0.035 14.1 0.0 0.068 13.2 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_23 PF13476.6 gi|48478522|ref|YP_024228.1| - 0.046 14.2 0.1 0.067 13.7 0.1 1.4 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|48478522|ref|YP_024228.1| - 0.049 13.6 0.0 0.11 12.4 0.0 1.6 1 0 0 1 1 1 0 NACHT domain SAM_3 PF18016.1 gi|48478522|ref|YP_024228.1| - 0.055 13.3 0.0 0.13 12.1 0.0 1.6 1 0 0 1 1 1 0 SAM domain (Sterile alpha motif) DUF87 PF01935.17 gi|48478522|ref|YP_024228.1| - 0.095 12.8 0.2 0.19 11.8 0.2 1.5 1 0 0 1 1 1 0 Helicase HerA, central domain Nab2p_Zf1 PF18260.1 gi|48478522|ref|YP_024228.1| - 0.2 11.6 1.7 0.27 11.2 0.7 1.7 2 0 0 2 2 2 0 Nuclear polyadenylated RNA-binding 2 protein CCCH zinc finger 1 AAA_24 PF13479.6 gi|48478522|ref|YP_024228.1| - 0.21 11.3 0.5 0.36 10.5 0.0 1.7 2 0 0 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 gi|48478522|ref|YP_024228.1| - 0.23 11.3 0.7 0.38 10.6 0.1 1.6 2 0 0 2 2 1 0 RsgA GTPase TniB PF05621.11 gi|48478522|ref|YP_024228.1| - 0.36 10.2 1.6 3.4 7.0 0.2 2.2 2 0 0 2 2 2 0 Bacterial TniB protein zf-CCCH_2 PF14608.6 gi|48478522|ref|YP_024228.1| - 0.94 10.0 3.2 1.7 9.3 3.2 1.4 1 0 0 1 1 1 0 RNA-binding, Nab2-type zinc finger AAA_15 PF13175.6 gi|48478522|ref|YP_024228.1| - 1.1 8.9 3.6 9.3 5.8 0.2 2.1 1 1 0 2 2 2 0 AAA ATPase domain ABC_tran PF00005.27 gi|48478523|ref|YP_024229.1| - 4.1e-30 105.1 0.0 6.1e-30 104.5 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_22 PF13401.6 gi|48478523|ref|YP_024229.1| - 0.00022 21.5 0.0 0.0009 19.5 0.0 1.9 1 1 0 1 1 1 1 AAA domain DUF87 PF01935.17 gi|48478523|ref|YP_024229.1| - 0.00027 21.1 0.0 0.00047 20.3 0.0 1.5 1 0 0 1 1 1 1 Helicase HerA, central domain oligo_HPY PF08352.12 gi|48478523|ref|YP_024229.1| - 0.00056 20.4 0.0 0.0011 19.5 0.0 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region SMC_N PF02463.19 gi|48478523|ref|YP_024229.1| - 0.0013 18.2 0.0 0.002 17.6 0.0 1.3 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|48478523|ref|YP_024229.1| - 0.0018 18.0 0.1 0.003 17.3 0.1 1.4 1 0 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|48478523|ref|YP_024229.1| - 0.002 18.1 0.0 0.0033 17.4 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_21 PF13304.6 gi|48478523|ref|YP_024229.1| - 0.011 15.5 2.0 0.39 10.5 0.0 2.3 1 1 0 2 2 2 0 AAA domain, putative AbiEii toxin, Type IV TA system TniB PF05621.11 gi|48478523|ref|YP_024229.1| - 0.017 14.5 0.1 0.35 10.3 0.0 2.2 2 0 0 2 2 2 0 Bacterial TniB protein AAA_16 PF13191.6 gi|48478523|ref|YP_024229.1| - 0.021 15.2 0.0 0.026 14.9 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain AAA_13 PF13166.6 gi|48478523|ref|YP_024229.1| - 0.034 12.8 1.5 0.087 11.5 0.0 2.2 2 1 1 3 3 3 0 AAA domain AAA_29 PF13555.6 gi|48478523|ref|YP_024229.1| - 0.04 13.7 0.1 0.074 12.8 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA PF00004.29 gi|48478523|ref|YP_024229.1| - 0.041 14.3 0.0 0.21 12.0 0.0 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Zeta_toxin PF06414.12 gi|48478523|ref|YP_024229.1| - 0.042 13.1 0.1 0.16 11.2 0.0 1.8 1 1 1 2 2 2 0 Zeta toxin ATP-synt_F PF01990.17 gi|48478523|ref|YP_024229.1| - 0.062 13.6 0.1 2 8.8 0.0 2.2 2 0 0 2 2 2 0 ATP synthase (F/14-kDa) subunit NB-ARC PF00931.22 gi|48478523|ref|YP_024229.1| - 0.098 11.8 0.0 0.16 11.1 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain MukB PF04310.12 gi|48478523|ref|YP_024229.1| - 0.11 12.3 0.0 0.17 11.6 0.0 1.3 1 0 0 1 1 1 0 MukB N-terminal Mg_chelatase PF01078.21 gi|48478523|ref|YP_024229.1| - 0.12 11.8 0.0 0.68 9.3 0.0 1.9 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_18 PF13238.6 gi|48478523|ref|YP_024229.1| - 0.12 12.9 0.0 0.25 11.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain Cellulase PF00150.18 gi|48478524|ref|YP_024230.1| - 1.8e-07 30.9 0.0 6.6e-07 29.0 0.0 1.9 2 1 0 2 2 2 1 Cellulase (glycosyl hydrolase family 5) Glyco_hydro_1 PF00232.18 gi|48478525|ref|YP_024231.1| - 2.5e-59 200.9 2.1 1.9e-52 178.2 0.8 2.1 2 0 0 2 2 2 2 Glycosyl hydrolase family 1 UPF0158 PF03682.13 gi|48478525|ref|YP_024231.1| - 0.1 12.6 0.9 0.18 11.8 0.0 1.7 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0158) DUF1658 PF07871.11 gi|48478525|ref|YP_024231.1| - 0.17 11.8 0.8 0.31 11.0 0.1 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1658) Regulator_TrmB PF11495.8 gi|48478526|ref|YP_024232.1| - 3.3e-66 222.8 0.5 4.5e-66 222.4 0.5 1.2 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB TrmB PF01978.19 gi|48478526|ref|YP_024232.1| - 4.2e-17 61.8 0.0 8.7e-17 60.8 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 gi|48478526|ref|YP_024232.1| - 0.0023 17.7 0.0 0.0042 16.9 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family PLDc_2 PF13091.6 gi|48478526|ref|YP_024232.1| - 0.01 15.8 0.5 0.025 14.5 0.2 1.9 1 1 0 1 1 1 0 PLD-like domain HTH_24 PF13412.6 gi|48478526|ref|YP_024232.1| - 0.015 14.8 0.0 0.038 13.6 0.0 1.7 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|48478526|ref|YP_024232.1| - 0.04 13.8 0.0 0.071 13.0 0.0 1.4 1 0 0 1 1 1 0 MarR family HTH_9 PF08221.11 gi|48478526|ref|YP_024232.1| - 0.047 13.8 0.0 0.15 12.2 0.0 1.8 2 0 0 2 2 2 0 RNA polymerase III subunit RPC82 helix-turn-helix domain Rrf2 PF02082.20 gi|48478526|ref|YP_024232.1| - 0.058 13.7 0.0 0.13 12.6 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator HTH_IclR PF09339.10 gi|48478526|ref|YP_024232.1| - 0.065 13.1 0.0 0.12 12.2 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain SurE PF01975.17 gi|48478528|ref|YP_024234.1| - 3.1e-44 151.1 0.0 4e-44 150.7 0.0 1.1 1 0 0 1 1 1 1 Survival protein SurE NUC205 PF08168.11 gi|48478528|ref|YP_024234.1| - 0.12 11.9 0.0 0.22 11.0 0.0 1.4 1 0 0 1 1 1 0 NUC205 domain Orf78 PF06024.12 gi|48478529|ref|YP_024235.1| - 4.9 7.5 6.1 0.6 10.4 1.6 1.8 2 0 0 2 2 2 0 Orf78 (ac78) SnoaL_4 PF13577.6 gi|48478530|ref|YP_024236.1| - 4.5e-09 36.5 0.3 0.046 13.9 0.0 3.3 3 0 0 3 3 3 3 SnoaL-like domain LEA_3 PF03242.13 gi|48478530|ref|YP_024236.1| - 0.18 12.5 0.6 10 6.9 0.0 3.2 3 1 0 3 3 3 0 Late embryogenesis abundant protein DCP2 PF05026.13 gi|48478530|ref|YP_024236.1| - 0.98 9.8 9.1 25 5.3 1.2 3.7 3 0 0 3 3 3 0 Dcp2, box A domain Acyl-CoA_dh_1 PF00441.24 gi|48478531|ref|YP_024237.1| - 6e-29 101.2 0.0 9.1e-29 100.6 0.0 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.19 gi|48478531|ref|YP_024237.1| - 3.4e-15 56.0 0.0 5.5e-15 55.3 0.0 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 gi|48478531|ref|YP_024237.1| - 3.7e-06 27.2 0.0 5.3e-06 26.7 0.0 1.2 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain DUF996 PF06195.13 gi|48478532|ref|YP_024238.1| - 8.3e-28 97.3 29.9 8.3e-28 97.3 29.9 2.1 1 1 1 2 2 2 1 Protein of unknown function (DUF996) DUF347 PF03988.12 gi|48478532|ref|YP_024238.1| - 0.53 10.5 0.0 0.53 10.5 0.0 4.3 3 2 1 4 4 4 0 Repeat of Unknown Function (DUF347) DUF2975 PF11188.8 gi|48478532|ref|YP_024238.1| - 1.6 8.6 24.5 0.49 10.3 12.6 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF2975) UPF0182 PF03699.13 gi|48478532|ref|YP_024238.1| - 2.6 6.1 9.2 3.3 5.7 9.2 1.1 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0182) MTABC_N PF16185.5 gi|48478532|ref|YP_024238.1| - 3.4 7.1 7.8 5.8 6.3 7.8 1.3 1 0 0 1 1 1 0 Mitochondrial ABC-transporter N-terminal five TM region Cation_efflux PF01545.21 gi|48478532|ref|YP_024238.1| - 7.1 6.3 28.2 11 5.7 28.2 1.3 1 0 0 1 1 1 0 Cation efflux family Ammonium_transp PF00909.21 gi|48478533|ref|YP_024239.1| - 4.7e-89 298.9 32.6 5.4e-89 298.7 32.6 1.0 1 0 0 1 1 1 1 Ammonium Transporter Family TcdA_TcdB_pore PF12920.7 gi|48478533|ref|YP_024239.1| - 0.94 7.7 4.0 1.5 7.0 4.0 1.3 1 0 0 1 1 1 0 TcdA/TcdB pore forming domain GXGXG PF01493.19 gi|48478534|ref|YP_024240.1| - 4.7e-24 85.0 7.9 4.7e-24 85.0 7.9 1.7 2 0 0 2 2 2 1 GXGXG motif GATase_6 PF13522.6 gi|48478534|ref|YP_024240.1| - 1e-07 32.2 0.0 2.8e-07 30.8 0.0 1.7 1 1 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.6 gi|48478534|ref|YP_024240.1| - 9.1e-06 25.6 0.0 4.3e-05 23.4 0.0 2.1 1 1 0 1 1 1 1 Glutamine amidotransferase domain PUA_3 PF17785.1 gi|48478534|ref|YP_024240.1| - 0.099 12.5 0.6 4.8 7.1 0.1 2.6 2 0 0 2 2 2 0 PUA-like domain Glu_synthase PF01645.17 gi|48478535|ref|YP_024241.1| - 3.1e-95 319.4 0.2 5.8e-92 308.7 0.3 2.2 2 0 0 2 2 2 2 Conserved region in glutamate synthase Glu_syn_central PF04898.14 gi|48478535|ref|YP_024241.1| - 4e-19 69.2 0.5 8.7e-09 35.3 0.0 3.2 3 0 0 3 3 3 3 Glutamate synthase central domain FMN_dh PF01070.18 gi|48478535|ref|YP_024241.1| - 1.2e-11 44.3 1.5 4.9e-05 22.5 2.5 3.7 4 0 0 4 4 4 3 FMN-dependent dehydrogenase IMPDH PF00478.25 gi|48478535|ref|YP_024241.1| - 2.3e-05 23.5 3.1 0.0068 15.4 3.5 2.3 2 0 0 2 2 2 2 IMP dehydrogenase / GMP reductase domain NMO PF03060.15 gi|48478535|ref|YP_024241.1| - 0.0017 17.8 1.3 0.023 14.1 1.5 2.2 2 0 0 2 2 2 1 Nitronate monooxygenase NanE PF04131.14 gi|48478535|ref|YP_024241.1| - 0.031 13.5 0.1 0.16 11.2 0.1 2.1 3 0 0 3 3 3 0 Putative N-acetylmannosamine-6-phosphate epimerase DHO_dh PF01180.21 gi|48478535|ref|YP_024241.1| - 0.041 13.1 0.8 0.097 11.9 0.8 1.6 1 0 0 1 1 1 0 Dihydroorotate dehydrogenase Aconitase PF00330.20 gi|48478536|ref|YP_024242.1| - 1.1e-62 212.6 0.7 8.2e-60 203.1 0.7 2.6 1 1 0 1 1 1 1 Aconitase family (aconitate hydratase) DUF521 PF04412.13 gi|48478536|ref|YP_024242.1| - 4.1e-06 25.8 0.0 5.8e-06 25.3 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF521) Aconitase_C PF00694.19 gi|48478537|ref|YP_024243.1| - 8.5e-14 52.0 0.0 1.3e-13 51.4 0.0 1.3 1 0 0 1 1 1 1 Aconitase C-terminal domain Aconitase_2_N PF06434.13 gi|48478537|ref|YP_024243.1| - 3e-08 33.5 1.3 6.2e-06 26.0 0.3 2.4 1 1 1 2 2 2 2 Aconitate hydratase 2 N-terminus HMGL-like PF00682.19 gi|48478538|ref|YP_024244.1| - 1.1e-70 238.3 0.6 1.3e-70 238.0 0.6 1.1 1 0 0 1 1 1 1 HMGL-like AP_endonuc_2 PF01261.24 gi|48478538|ref|YP_024244.1| - 0.0034 16.9 0.0 0.0089 15.5 0.0 1.8 2 0 0 2 2 2 1 Xylose isomerase-like TIM barrel SPAM PF02090.15 gi|48478538|ref|YP_024244.1| - 0.017 15.0 0.1 0.03 14.1 0.1 1.3 1 0 0 1 1 1 0 Salmonella surface presentation of antigen gene type M protein PHD_like PF12910.7 gi|48478538|ref|YP_024244.1| - 0.033 14.2 0.0 0.069 13.2 0.0 1.6 1 0 0 1 1 1 0 Antitoxin of toxin-antitoxin, RelE / RelB, TA system RimK PF08443.11 gi|48478539|ref|YP_024245.1| - 1.1e-30 106.6 0.2 1.6e-30 106.1 0.2 1.2 1 0 0 1 1 1 1 RimK-like ATP-grasp domain ATP-grasp_3 PF02655.14 gi|48478539|ref|YP_024245.1| - 7.1e-11 42.4 0.3 1.1e-10 41.8 0.3 1.2 1 0 0 1 1 1 1 ATP-grasp domain GSH-S_ATP PF02955.16 gi|48478539|ref|YP_024245.1| - 2.4e-09 36.8 0.1 3.7e-09 36.2 0.1 1.2 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain CPSase_L_D2 PF02786.17 gi|48478539|ref|YP_024245.1| - 7.8e-07 28.8 0.0 2.3e-06 27.3 0.0 1.8 1 1 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATPgrasp_ST PF14397.6 gi|48478539|ref|YP_024245.1| - 6.4e-06 25.6 0.0 3.3e-05 23.3 0.0 2.0 2 0 0 2 2 2 1 Sugar-transfer associated ATP-grasp ATP-grasp PF02222.22 gi|48478539|ref|YP_024245.1| - 7.2e-05 22.4 0.0 0.00011 21.8 0.0 1.5 1 1 0 1 1 1 1 ATP-grasp domain ATP-grasp_5 PF13549.6 gi|48478539|ref|YP_024245.1| - 0.0001 21.9 0.0 0.00018 21.1 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain Dala_Dala_lig_C PF07478.13 gi|48478539|ref|YP_024245.1| - 0.0024 17.4 0.0 0.0059 16.2 0.0 1.8 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus ATP-grasp_4 PF13535.6 gi|48478539|ref|YP_024245.1| - 0.0083 15.7 0.0 0.016 14.8 0.0 1.6 1 1 0 1 1 1 1 ATP-grasp domain Peptidase_M20 PF01546.28 gi|48478540|ref|YP_024246.1| - 2.1e-22 79.9 0.0 2.5e-22 79.6 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|48478540|ref|YP_024246.1| - 8.4e-11 41.8 0.0 2.1e-10 40.5 0.0 1.7 2 0 0 2 2 2 1 Peptidase dimerisation domain EntA_Immun PF08951.10 gi|48478540|ref|YP_024246.1| - 0.077 13.4 0.5 0.5 10.8 0.0 2.6 3 0 0 3 3 3 0 Enterocin A Immunity Apo-CII PF05355.11 gi|48478540|ref|YP_024246.1| - 0.14 12.4 0.0 0.25 11.5 0.0 1.4 1 0 0 1 1 1 0 Apolipoprotein C-II EnY2 PF10163.9 gi|48478540|ref|YP_024246.1| - 0.15 12.4 0.0 0.36 11.2 0.0 1.6 1 0 0 1 1 1 0 Transcription factor e(y)2 RimK PF08443.11 gi|48478541|ref|YP_024247.1| - 2.4e-21 76.2 0.0 3.5e-21 75.7 0.0 1.2 1 0 0 1 1 1 1 RimK-like ATP-grasp domain GSH-S_ATP PF02955.16 gi|48478541|ref|YP_024247.1| - 4.3e-09 36.0 0.0 1.3e-08 34.4 0.0 1.7 1 1 1 2 2 2 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_3 PF02655.14 gi|48478541|ref|YP_024247.1| - 0.00017 21.7 0.0 0.0003 20.9 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain Aminotran_3 PF00202.21 gi|48478542|ref|YP_024248.1| - 2.9e-93 312.7 0.0 3.6e-93 312.4 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-III DUF1473 PF07341.11 gi|48478542|ref|YP_024248.1| - 0.099 12.4 0.9 0.54 10.0 0.3 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1473) AA_kinase PF00696.28 gi|48478543|ref|YP_024249.1| - 5.3e-29 101.5 1.0 6.1e-29 101.3 1.0 1.0 1 0 0 1 1 1 1 Amino acid kinase family CofC PF01983.16 gi|48478543|ref|YP_024249.1| - 0.012 14.8 0.4 0.027 13.6 0.0 1.8 2 0 0 2 2 2 0 Guanylyl transferase CofC like Semialdhyde_dh PF01118.24 gi|48478544|ref|YP_024250.1| - 5.8e-32 110.7 0.0 1.2e-31 109.6 0.0 1.6 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.18 gi|48478544|ref|YP_024250.1| - 1.7e-09 38.0 0.0 2.7e-09 37.4 0.0 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain F420_oxidored PF03807.17 gi|48478544|ref|YP_024250.1| - 0.022 15.3 0.0 0.039 14.5 0.0 1.5 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent Prok-RING_1 PF14446.6 gi|48478545|ref|YP_024251.1| - 0.03 14.2 1.8 0.055 13.4 1.7 1.5 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 zf-C2H2_3 PF13878.6 gi|48478545|ref|YP_024251.1| - 0.052 13.4 0.4 0.71 9.8 0.0 2.1 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO zf-PHD-like PF15446.6 gi|48478545|ref|YP_024251.1| - 0.092 12.4 0.1 0.11 12.1 0.1 1.2 1 0 0 1 1 1 0 PHD/FYVE-zinc-finger like domain Lar_restr_allev PF14354.6 gi|48478545|ref|YP_024251.1| - 0.11 12.9 0.4 0.14 12.6 0.4 1.2 1 0 0 1 1 1 0 Restriction alleviation protein Lar DUF2752 PF10825.8 gi|48478545|ref|YP_024251.1| - 0.13 12.3 0.8 0.21 11.7 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2752) Fringe PF02434.16 gi|48478545|ref|YP_024251.1| - 0.13 11.6 0.0 0.15 11.5 0.0 1.1 1 0 0 1 1 1 0 Fringe-like AIRC PF00731.20 gi|48478546|ref|YP_024252.1| - 7.7e-63 210.5 0.1 8.6e-63 210.4 0.1 1.0 1 0 0 1 1 1 1 AIR carboxylase ATP-grasp PF02222.22 gi|48478547|ref|YP_024253.1| - 5.4e-43 146.5 0.0 7.4e-43 146.1 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain PurK_C PF17769.1 gi|48478547|ref|YP_024253.1| - 3.2e-11 42.7 0.9 6e-11 41.9 0.0 1.9 2 0 0 2 2 2 1 Phosphoribosylaminoimidazole carboxylase C-terminal domain ATP-grasp_3 PF02655.14 gi|48478547|ref|YP_024253.1| - 7.4e-06 26.1 0.1 1.2e-05 25.4 0.1 1.3 1 0 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.17 gi|48478547|ref|YP_024253.1| - 0.00033 20.2 0.1 0.33 10.4 0.0 2.2 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain GARS_A PF01071.19 gi|48478547|ref|YP_024253.1| - 0.0018 18.1 0.2 0.021 14.6 0.0 2.2 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain Dala_Dala_lig_C PF07478.13 gi|48478547|ref|YP_024253.1| - 0.082 12.4 0.2 0.15 11.6 0.2 1.3 1 0 0 1 1 1 0 D-ala D-ala ligase C-terminus DUF1492 PF07374.11 gi|48478547|ref|YP_024253.1| - 0.12 12.6 0.0 0.34 11.1 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF1492) Radical_SAM PF04055.21 gi|48478548|ref|YP_024254.1| - 1.2e-09 38.8 0.0 1.9e-09 38.1 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily NTP_transf_3 PF12804.7 gi|48478549|ref|YP_024255.1| - 8.3e-25 88.0 0.0 1e-24 87.7 0.0 1.0 1 0 0 1 1 1 1 MobA-like NTP transferase domain CTP_transf_3 PF02348.19 gi|48478549|ref|YP_024255.1| - 0.00042 20.3 0.0 0.0013 18.7 0.0 1.7 2 0 0 2 2 2 1 Cytidylyltransferase IspD PF01128.19 gi|48478549|ref|YP_024255.1| - 0.024 14.4 0.0 0.032 14.0 0.0 1.1 1 0 0 1 1 1 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Glycos_transf_2 PF00535.26 gi|48478550|ref|YP_024256.1| - 2.1e-31 109.1 0.2 2.8e-31 108.6 0.2 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|48478550|ref|YP_024256.1| - 1.7e-07 31.4 0.0 2.4e-07 30.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.6 gi|48478550|ref|YP_024256.1| - 0.0018 17.8 0.0 0.0029 17.1 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_4 PF13704.6 gi|48478550|ref|YP_024256.1| - 0.012 16.1 0.1 0.053 14.0 0.1 2.0 1 1 0 1 1 1 0 Glycosyl transferase family 2 Pfg27 PF09216.10 gi|48478550|ref|YP_024256.1| - 0.049 13.5 0.4 0.08 12.8 0.4 1.3 1 0 0 1 1 1 0 Pfg27 Pyr_redox_2 PF07992.14 gi|48478551|ref|YP_024257.1| - 4e-43 147.7 0.0 5.7e-43 147.2 0.0 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|48478551|ref|YP_024257.1| - 7.2e-14 52.1 0.2 4.2e-06 27.2 0.0 3.3 3 0 0 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|48478551|ref|YP_024257.1| - 1.6e-11 44.1 0.0 8.4e-08 31.8 0.0 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|48478551|ref|YP_024257.1| - 1.7e-11 44.4 0.0 1e-10 41.8 0.0 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NAD_binding_8 PF13450.6 gi|48478551|ref|YP_024257.1| - 4.7e-08 33.2 0.4 0.00021 21.5 0.0 2.7 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain K_oxygenase PF13434.6 gi|48478551|ref|YP_024257.1| - 1.9e-07 30.6 0.0 1.5e-06 27.6 0.0 2.2 2 1 1 3 3 3 1 L-lysine 6-monooxygenase (NADPH-requiring) DAO PF01266.24 gi|48478551|ref|YP_024257.1| - 4.9e-07 29.6 0.0 0.022 14.4 0.0 3.4 3 1 1 4 4 4 2 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|48478551|ref|YP_024257.1| - 7.1e-06 25.0 0.2 0.0021 16.8 0.2 2.4 2 0 0 2 2 2 2 HI0933-like protein AlaDh_PNT_C PF01262.21 gi|48478551|ref|YP_024257.1| - 0.00037 19.9 0.0 0.0045 16.3 0.1 2.1 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain FAD_binding_2 PF00890.24 gi|48478551|ref|YP_024257.1| - 0.00061 19.0 0.2 0.0029 16.7 0.1 2.0 2 0 0 2 2 2 1 FAD binding domain NAD_binding_7 PF13241.6 gi|48478551|ref|YP_024257.1| - 0.00072 20.0 0.0 1.6 9.2 0.0 2.4 2 0 0 2 2 2 2 Putative NAD(P)-binding GIDA PF01134.22 gi|48478551|ref|YP_024257.1| - 0.0011 18.2 0.0 0.048 12.7 0.1 2.7 3 0 0 3 3 3 1 Glucose inhibited division protein A TrkA_N PF02254.18 gi|48478551|ref|YP_024257.1| - 0.0016 18.6 0.0 0.57 10.5 0.0 2.5 2 0 0 2 2 2 1 TrkA-N domain NAD_binding_9 PF13454.6 gi|48478551|ref|YP_024257.1| - 0.0043 17.0 0.0 1.7 8.6 0.0 3.3 3 1 1 4 4 4 1 FAD-NAD(P)-binding FAD_oxidored PF12831.7 gi|48478551|ref|YP_024257.1| - 0.0075 15.7 0.3 0.037 13.4 0.1 2.0 2 0 0 2 2 2 1 FAD dependent oxidoreductase Trp_halogenase PF04820.14 gi|48478551|ref|YP_024257.1| - 0.11 11.3 0.0 0.23 10.2 0.0 1.5 1 0 0 1 1 1 0 Tryptophan halogenase FAD_binding_3 PF01494.19 gi|48478551|ref|YP_024257.1| - 0.12 11.6 0.2 15 4.7 0.0 2.3 2 0 0 2 2 2 0 FAD binding domain DUF3134 PF11332.8 gi|48478552|ref|YP_024258.1| - 5.9 7.3 10.6 6.3 7.2 10.6 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3134) Mito_fiss_Elm1 PF06258.11 gi|48478553|ref|YP_024259.1| - 0.065 12.4 0.0 0.066 12.3 0.0 1.1 1 0 0 1 1 1 0 Mitochondrial fission ELM1 E1-E2_ATPase PF00122.20 gi|48478554|ref|YP_024260.1| - 4.5e-47 159.9 3.3 4.5e-47 159.9 3.3 3.4 3 0 0 3 3 3 1 E1-E2 ATPase Hydrolase PF00702.26 gi|48478554|ref|YP_024260.1| - 5.8e-23 82.3 0.0 9.8e-23 81.5 0.0 1.4 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase_N PF00690.26 gi|48478554|ref|YP_024260.1| - 6e-13 48.3 0.0 1.4e-12 47.1 0.0 1.7 1 0 0 1 1 1 1 Cation transporter/ATPase, N-terminus Hydrolase_3 PF08282.12 gi|48478554|ref|YP_024260.1| - 1.1e-05 25.3 0.7 7.8e-05 22.5 0.3 2.2 1 1 1 2 2 2 1 haloacid dehalogenase-like hydrolase Cation_ATPase PF13246.6 gi|48478554|ref|YP_024260.1| - 0.0001 22.3 0.0 0.00028 20.9 0.0 1.7 1 0 0 1 1 1 1 Cation transport ATPase (P-type) FMP23 PF17315.2 gi|48478554|ref|YP_024260.1| - 0.026 14.7 0.1 0.073 13.2 0.1 1.7 1 0 0 1 1 1 0 Found in mitochondrial proteome AA_permease_2 PF13520.6 gi|48478555|ref|YP_024261.1| - 7.3e-45 153.6 65.3 7.8e-45 153.5 64.8 1.3 1 1 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|48478555|ref|YP_024261.1| - 3.6e-43 147.9 58.9 4.9e-43 147.4 58.9 1.1 1 0 0 1 1 1 1 Amino acid permease Mid2 PF04478.12 gi|48478555|ref|YP_024261.1| - 0.95 9.3 3.5 17 5.2 0.3 2.6 2 0 0 2 2 2 0 Mid2 like cell wall stress sensor FGGY_N PF00370.21 gi|48478556|ref|YP_024262.1| - 3.3e-50 170.9 0.0 4.7e-50 170.4 0.0 1.3 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain FGGY_C PF02782.16 gi|48478556|ref|YP_024262.1| - 9.8e-27 94.0 0.1 1.1e-25 90.6 0.1 2.1 1 1 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain COXG PF06240.13 gi|48478557|ref|YP_024263.1| - 2.6e-21 75.8 0.0 2.9e-21 75.7 0.0 1.0 1 0 0 1 1 1 1 Carbon monoxide dehydrogenase subunit G (CoxG) DAO PF01266.24 gi|48478558|ref|YP_024264.1| - 1e-38 133.9 0.0 1.2e-38 133.7 0.0 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|48478558|ref|YP_024264.1| - 6.6e-07 29.5 0.4 4.4e-06 26.8 0.2 2.5 3 0 0 3 3 3 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.14 gi|48478558|ref|YP_024264.1| - 0.00067 19.0 0.0 0.0011 18.3 0.0 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|48478558|ref|YP_024264.1| - 0.00095 18.5 0.2 0.0016 17.7 0.2 1.3 1 0 0 1 1 1 1 FAD binding domain HI0933_like PF03486.14 gi|48478558|ref|YP_024264.1| - 0.002 16.9 0.0 0.0031 16.3 0.0 1.2 1 0 0 1 1 1 1 HI0933-like protein FAD_binding_2 PF00890.24 gi|48478558|ref|YP_024264.1| - 0.0048 16.0 0.0 0.0087 15.2 0.0 1.4 1 0 0 1 1 1 1 FAD binding domain UDPG_MGDP_dh_N PF03721.14 gi|48478558|ref|YP_024264.1| - 0.017 14.7 0.8 0.048 13.2 0.1 2.0 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Trp_halogenase PF04820.14 gi|48478558|ref|YP_024264.1| - 0.024 13.5 0.2 0.12 11.2 0.1 2.0 2 0 0 2 2 2 0 Tryptophan halogenase Fibrillarin PF01269.17 gi|48478558|ref|YP_024264.1| - 0.032 13.3 0.0 0.053 12.6 0.0 1.2 1 0 0 1 1 1 0 Fibrillarin FAD_oxidored PF12831.7 gi|48478558|ref|YP_024264.1| - 0.049 13.0 0.0 0.11 11.8 0.0 1.6 2 0 0 2 2 2 0 FAD dependent oxidoreductase ApbA PF02558.16 gi|48478558|ref|YP_024264.1| - 0.095 12.3 0.1 0.17 11.5 0.1 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Thermopsin PF05317.11 gi|48478559|ref|YP_024265.1| - 7.3e-82 274.7 21.1 7.3e-82 274.7 21.1 2.2 2 0 0 2 2 2 1 Thermopsin COXG PF06240.13 gi|48478560|ref|YP_024266.1| - 2.5e-23 82.4 0.1 2.7e-23 82.2 0.1 1.0 1 0 0 1 1 1 1 Carbon monoxide dehydrogenase subunit G (CoxG) DUF2103 PF09876.9 gi|48478560|ref|YP_024266.1| - 0.16 12.0 0.0 0.37 10.8 0.0 1.6 1 1 1 2 2 2 0 Predicted metal-binding protein (DUF2103) Peptidase_S9 PF00326.21 gi|48478561|ref|YP_024267.1| - 4.3e-45 153.8 0.1 6.8e-45 153.1 0.1 1.3 1 0 0 1 1 1 1 Prolyl oligopeptidase family DLH PF01738.18 gi|48478561|ref|YP_024267.1| - 1e-09 38.3 0.0 2e-09 37.3 0.0 1.4 1 0 0 1 1 1 1 Dienelactone hydrolase family Abhydrolase_1 PF00561.20 gi|48478561|ref|YP_024267.1| - 5e-08 32.9 1.0 0.001 18.8 1.0 2.5 1 1 1 2 2 2 2 alpha/beta hydrolase fold Peptidase_S15 PF02129.18 gi|48478561|ref|YP_024267.1| - 1.3e-06 28.2 0.2 0.029 14.0 0.0 2.2 1 1 1 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) Abhydrolase_2 PF02230.16 gi|48478561|ref|YP_024267.1| - 1.7e-05 24.7 0.1 0.0003 20.7 0.0 2.3 1 1 1 2 2 2 1 Phospholipase/Carboxylesterase DUF2920 PF11144.8 gi|48478561|ref|YP_024267.1| - 6.2e-05 22.3 4.9 0.0045 16.2 0.3 3.1 4 0 0 4 4 4 2 Protein of unknown function (DUF2920) Hydrolase_4 PF12146.8 gi|48478561|ref|YP_024267.1| - 0.0013 18.1 0.1 0.076 12.3 0.0 2.2 2 0 0 2 2 2 1 Serine aminopeptidase, S33 Abhydrolase_6 PF12697.7 gi|48478561|ref|YP_024267.1| - 0.0035 18.0 0.0 0.04 14.5 0.0 2.1 2 0 0 2 2 2 1 Alpha/beta hydrolase family Abhydrolase_3 PF07859.13 gi|48478561|ref|YP_024267.1| - 0.019 14.8 0.0 6.7 6.5 0.0 2.4 2 0 0 2 2 2 0 alpha/beta hydrolase fold AXE1 PF05448.12 gi|48478561|ref|YP_024267.1| - 0.022 13.4 0.2 0.3 9.7 0.2 2.3 1 1 0 1 1 1 0 Acetyl xylan esterase (AXE1) BAAT_C PF08840.11 gi|48478561|ref|YP_024267.1| - 0.022 14.7 0.0 0.83 9.5 0.0 2.3 1 1 0 1 1 1 0 BAAT / Acyl-CoA thioester hydrolase C terminal FSH1 PF03959.13 gi|48478561|ref|YP_024267.1| - 0.058 13.1 0.1 0.1 12.3 0.1 1.4 1 0 0 1 1 1 0 Serine hydrolase (FSH1) Abhydrolase_4 PF08386.10 gi|48478561|ref|YP_024267.1| - 0.11 12.6 0.0 0.2 11.8 0.0 1.3 1 0 0 1 1 1 0 TAP-like protein HD PF01966.22 gi|48478562|ref|YP_024268.1| - 4.1e-12 46.4 0.4 8.2e-12 45.4 0.4 1.5 1 0 0 1 1 1 1 HD domain HDOD PF08668.12 gi|48478562|ref|YP_024268.1| - 0.001 18.6 0.0 0.0018 17.8 0.0 1.3 1 0 0 1 1 1 1 HDOD domain Acetyltransf_1 PF00583.25 gi|48478563|ref|YP_024269.1| - 3.4e-16 59.5 0.0 4.4e-16 59.2 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|48478563|ref|YP_024269.1| - 3.1e-12 46.6 0.1 3.7e-12 46.3 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|48478563|ref|YP_024269.1| - 1.1e-11 44.9 0.0 1.6e-11 44.4 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|48478563|ref|YP_024269.1| - 3.9e-07 29.9 0.0 9.1e-07 28.8 0.0 1.5 1 1 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.7 gi|48478563|ref|YP_024269.1| - 5.2e-06 26.6 0.1 3.2e-05 24.0 0.1 1.9 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|48478563|ref|YP_024269.1| - 5.1e-05 23.5 0.5 6.6e-05 23.1 0.5 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain MOZ_SAS PF01853.18 gi|48478563|ref|YP_024269.1| - 0.00011 22.0 0.0 0.00018 21.2 0.0 1.3 1 1 0 1 1 1 1 MOZ/SAS family Acetyltransf_CG PF14542.6 gi|48478563|ref|YP_024269.1| - 0.031 14.4 0.0 0.059 13.5 0.0 1.4 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase GNAT_acetyltr_2 PF13718.6 gi|48478563|ref|YP_024269.1| - 0.13 11.7 0.0 0.16 11.3 0.0 1.3 1 0 0 1 1 1 0 GNAT acetyltransferase 2 Glyco_hydro_15 PF00723.21 gi|48478564|ref|YP_024270.1| - 2e-22 79.6 3.4 1.5e-16 60.3 2.3 3.1 2 1 1 3 3 3 2 Glycosyl hydrolases family 15 Bac_rhamnosid6H PF17389.2 gi|48478564|ref|YP_024270.1| - 0.00018 20.9 2.1 0.0004 19.8 2.1 1.5 1 0 0 1 1 1 1 Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain ABC_tran PF00005.27 gi|48478565|ref|YP_024271.1| - 5.2e-32 111.2 0.0 8.3e-32 110.6 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|48478565|ref|YP_024271.1| - 2.9e-10 40.4 0.5 0.0007 19.5 0.1 2.3 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|48478565|ref|YP_024271.1| - 4.8e-08 32.7 0.1 2.3e-07 30.5 0.1 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain TOBE_2 PF08402.10 gi|48478565|ref|YP_024271.1| - 5.8e-05 23.2 0.0 0.00017 21.7 0.0 1.8 2 0 0 2 2 2 1 TOBE domain AAA_23 PF13476.6 gi|48478565|ref|YP_024271.1| - 0.00086 19.9 0.4 0.0017 18.9 0.1 1.6 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.6 gi|48478565|ref|YP_024271.1| - 0.006 16.3 0.0 0.013 15.2 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_30 PF13604.6 gi|48478565|ref|YP_024271.1| - 0.0062 16.3 0.0 0.015 15.0 0.0 1.5 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|48478565|ref|YP_024271.1| - 0.015 15.5 0.0 0.12 12.7 0.0 2.0 2 0 0 2 2 2 0 AAA domain ATPase_2 PF01637.18 gi|48478565|ref|YP_024271.1| - 0.017 15.0 0.0 0.032 14.2 0.0 1.4 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_13 PF13166.6 gi|48478565|ref|YP_024271.1| - 0.025 13.2 0.0 0.074 11.7 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.6 gi|48478565|ref|YP_024271.1| - 0.027 14.9 0.0 0.12 12.7 0.0 1.9 2 0 0 2 2 2 0 AAA ATPase domain AAA_33 PF13671.6 gi|48478565|ref|YP_024271.1| - 0.034 14.3 0.1 1.1 9.4 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_27 PF13514.6 gi|48478565|ref|YP_024271.1| - 0.036 13.7 0.1 0.06 12.9 0.1 1.3 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|48478565|ref|YP_024271.1| - 0.037 14.6 0.0 0.098 13.2 0.0 1.8 1 1 0 1 1 1 0 AAA domain AAA PF00004.29 gi|48478565|ref|YP_024271.1| - 0.052 14.0 0.3 0.43 11.0 0.3 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) NACHT PF05729.12 gi|48478565|ref|YP_024271.1| - 0.057 13.3 0.5 0.1 12.5 0.1 1.6 2 0 0 2 2 2 0 NACHT domain RsgA_GTPase PF03193.16 gi|48478565|ref|YP_024271.1| - 0.061 13.2 0.0 0.11 12.4 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase SbcCD_C PF13558.6 gi|48478565|ref|YP_024271.1| - 0.076 13.3 0.1 0.53 10.6 0.1 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit cobW PF02492.19 gi|48478565|ref|YP_024271.1| - 0.13 11.9 0.1 0.22 11.1 0.1 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_28 PF13521.6 gi|48478565|ref|YP_024271.1| - 0.15 12.3 0.3 0.4 10.9 0.0 1.8 2 1 1 3 3 3 0 AAA domain BPD_transp_1 PF00528.22 gi|48478566|ref|YP_024272.1| - 1.2e-18 67.6 50.6 3.7e-12 46.3 20.1 4.0 3 2 1 4 4 4 2 Binding-protein-dependent transport system inner membrane component SBP_bac_1 PF01547.25 gi|48478567|ref|YP_024273.1| - 2.6e-16 60.4 8.6 5.7e-16 59.3 8.6 1.5 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein DUF309 PF03745.14 gi|48478568|ref|YP_024274.1| - 1.2e-15 56.9 1.8 2.1e-15 56.1 1.4 1.6 1 1 1 2 2 2 1 Domain of unknown function (DUF309) NERD PF08378.11 gi|48478568|ref|YP_024274.1| - 0.0041 17.6 0.2 0.0092 16.4 0.1 1.5 1 1 0 1 1 1 1 Nuclease-related domain ABC2_membrane_2 PF12679.7 gi|48478570|ref|YP_024276.1| - 3.1e-10 39.8 31.0 1.5e-09 37.6 31.0 1.8 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|48478570|ref|YP_024276.1| - 2.4e-05 23.6 46.8 2.4e-05 23.6 46.8 2.2 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|48478570|ref|YP_024276.1| - 0.0013 18.2 28.0 0.0013 18.2 28.0 2.1 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_5 PF13346.6 gi|48478570|ref|YP_024276.1| - 1.9 8.0 58.9 0.34 10.4 48.6 2.9 1 1 1 2 2 2 0 ABC-2 family transporter protein ABC_tran PF00005.27 gi|48478571|ref|YP_024277.1| - 1.9e-24 86.7 0.0 5.3e-24 85.3 0.0 1.7 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 gi|48478571|ref|YP_024277.1| - 4.7e-11 43.1 3.1 1.2e-06 28.6 0.0 2.5 2 1 1 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|48478571|ref|YP_024277.1| - 0.00024 21.5 0.0 0.00034 21.0 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.19 gi|48478571|ref|YP_024277.1| - 0.00031 20.3 0.2 0.0047 16.4 0.2 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|48478571|ref|YP_024277.1| - 0.00052 20.3 0.0 0.0024 18.1 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|48478571|ref|YP_024277.1| - 0.00066 20.2 0.4 0.00066 20.2 0.4 2.1 2 1 1 3 3 3 1 AAA domain AAA_13 PF13166.6 gi|48478571|ref|YP_024277.1| - 0.0013 17.5 3.4 0.3 9.7 0.8 2.2 2 0 0 2 2 2 2 AAA domain AAA_30 PF13604.6 gi|48478571|ref|YP_024277.1| - 0.0042 16.8 0.0 0.011 15.4 0.0 1.6 2 0 0 2 2 2 1 AAA domain AAA_27 PF13514.6 gi|48478571|ref|YP_024277.1| - 0.0046 16.6 0.0 0.0087 15.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|48478571|ref|YP_024277.1| - 0.0059 16.3 0.1 0.013 15.3 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain Rad17 PF03215.15 gi|48478571|ref|YP_024277.1| - 0.0071 16.3 0.0 0.016 15.2 0.0 1.5 2 0 0 2 2 2 1 Rad17 P-loop domain AAA_14 PF13173.6 gi|48478571|ref|YP_024277.1| - 0.035 14.1 0.8 0.18 11.9 0.1 2.4 1 1 2 3 3 3 0 AAA domain Mg_chelatase PF01078.21 gi|48478571|ref|YP_024277.1| - 0.039 13.3 0.0 0.12 11.7 0.0 1.7 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_24 PF13479.6 gi|48478571|ref|YP_024277.1| - 0.044 13.5 0.3 0.12 12.1 0.1 1.9 2 1 0 2 2 2 0 AAA domain AAA PF00004.29 gi|48478571|ref|YP_024277.1| - 0.055 13.9 0.0 0.15 12.5 0.0 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) ATP_bind_1 PF03029.17 gi|48478571|ref|YP_024277.1| - 0.071 12.9 0.1 0.3 10.8 0.1 1.9 1 1 1 2 2 2 0 Conserved hypothetical ATP binding protein SRP54 PF00448.22 gi|48478571|ref|YP_024277.1| - 0.073 12.7 0.0 0.13 11.8 0.0 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_18 PF13238.6 gi|48478571|ref|YP_024277.1| - 0.081 13.5 0.0 0.22 12.0 0.0 1.9 2 0 0 2 2 2 0 AAA domain cobW PF02492.19 gi|48478571|ref|YP_024277.1| - 0.13 11.8 0.0 0.23 11.0 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_19 PF13245.6 gi|48478571|ref|YP_024277.1| - 0.14 12.5 0.1 0.2 12.0 0.1 1.5 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|48478571|ref|YP_024277.1| - 0.2 11.9 0.0 0.34 11.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain Radical_SAM PF04055.21 gi|48478572|ref|YP_024278.1| - 3.4e-07 30.8 0.1 5.7e-07 30.1 0.0 1.4 1 1 0 1 1 1 1 Radical SAM superfamily DUF5131 PF07505.11 gi|48478572|ref|YP_024278.1| - 0.00069 19.1 0.1 0.0017 17.8 0.1 1.7 1 1 0 1 1 1 1 Protein of unknown function (DUF5131) DUF1848 PF08902.11 gi|48478572|ref|YP_024278.1| - 0.0018 18.1 10.3 0.021 14.6 0.3 2.4 2 1 0 2 2 2 2 Domain of unknown function (DUF1848) Nre_N PF04894.12 gi|48478573|ref|YP_024279.1| - 5.6e-95 318.2 0.0 6.9e-95 317.9 0.0 1.1 1 0 0 1 1 1 1 Archaeal Nre, N-terminal Nre_C PF04895.12 gi|48478573|ref|YP_024279.1| - 2.2e-32 111.2 0.0 3.5e-32 110.6 0.0 1.3 1 0 0 1 1 1 1 Archaeal Nre, C-terminal TPP_enzyme_C PF02775.21 gi|48478574|ref|YP_024280.1| - 4.6e-42 143.4 0.1 4.8e-41 140.1 0.0 2.5 2 1 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_N PF02776.18 gi|48478574|ref|YP_024280.1| - 5.4e-42 143.3 0.0 9.5e-42 142.5 0.0 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_M PF00205.22 gi|48478574|ref|YP_024280.1| - 8.1e-28 96.9 0.1 1.4e-26 92.9 0.0 2.2 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, central domain POR_N PF01855.19 gi|48478574|ref|YP_024280.1| - 0.003 17.4 0.0 0.0052 16.5 0.0 1.3 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg CO_dh PF02552.16 gi|48478574|ref|YP_024280.1| - 0.039 13.7 0.0 0.13 12.1 0.0 1.7 1 1 0 1 1 1 0 CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit Peptidase_M55 PF04951.13 gi|48478574|ref|YP_024280.1| - 0.11 11.8 0.0 0.23 10.8 0.0 1.4 1 0 0 1 1 1 0 D-aminopeptidase DUF72 PF01904.18 gi|48478575|ref|YP_024281.1| - 4e-50 170.9 0.0 4.6e-50 170.8 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF72 3HCDH_N PF02737.18 gi|48478576|ref|YP_024282.1| - 3.2e-61 206.3 0.1 4.2e-61 206.0 0.1 1.2 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 3HCDH PF00725.22 gi|48478576|ref|YP_024282.1| - 8.5e-33 112.9 0.1 1.5e-32 112.0 0.1 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NAD_Gly3P_dh_N PF01210.23 gi|48478576|ref|YP_024282.1| - 0.001 19.1 0.0 0.0016 18.4 0.0 1.4 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus UDPG_MGDP_dh_N PF03721.14 gi|48478576|ref|YP_024282.1| - 0.0012 18.5 0.2 0.0018 17.8 0.2 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Pyr_redox_2 PF07992.14 gi|48478576|ref|YP_024282.1| - 0.01 15.1 0.1 0.016 14.4 0.1 1.4 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase F420_oxidored PF03807.17 gi|48478576|ref|YP_024282.1| - 0.014 16.0 0.2 0.029 14.9 0.2 1.7 1 1 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 gi|48478576|ref|YP_024282.1| - 0.026 14.7 0.2 0.046 13.9 0.2 1.5 1 1 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase ApbA PF02558.16 gi|48478576|ref|YP_024282.1| - 0.12 12.0 0.0 0.19 11.3 0.0 1.3 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Med9 PF07544.13 gi|48478576|ref|YP_024282.1| - 0.17 12.0 0.4 1.8 8.7 0.5 2.3 2 0 0 2 2 2 0 RNA polymerase II transcription mediator complex subunit 9 Thiolase_N PF00108.23 gi|48478577|ref|YP_024283.1| - 3e-79 266.1 0.1 3.7e-79 265.7 0.1 1.1 1 0 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|48478577|ref|YP_024283.1| - 8.7e-39 132.0 0.0 1.6e-38 131.1 0.0 1.5 1 0 0 1 1 1 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 gi|48478577|ref|YP_024283.1| - 1e-06 28.5 0.3 2.1e-06 27.5 0.3 1.5 1 0 0 1 1 1 1 Beta-ketoacyl synthase, N-terminal domain DegQ PF08181.11 gi|48478577|ref|YP_024283.1| - 0.12 12.5 0.5 0.44 10.7 0.0 2.1 2 0 0 2 2 2 0 DegQ (SacQ) family LDcluster4 PF18306.1 gi|48478578|ref|YP_024284.1| - 3.7e-41 140.3 3.5 4.6e-41 140.0 3.5 1.1 1 0 0 1 1 1 1 SLOG cluster4 family DNA_processg_A PF02481.15 gi|48478578|ref|YP_024284.1| - 3.9e-07 29.5 0.2 0.0007 18.9 0.1 2.1 2 0 0 2 2 2 2 DNA recombination-mediator protein A Lysine_decarbox PF03641.14 gi|48478578|ref|YP_024284.1| - 0.0084 16.2 0.1 0.016 15.3 0.1 1.5 1 0 0 1 1 1 1 Possible lysine decarboxylase tRNA_m1G_MT PF01746.21 gi|48478578|ref|YP_024284.1| - 0.042 13.6 0.1 0.094 12.4 0.0 1.5 2 0 0 2 2 2 0 tRNA (Guanine-1)-methyltransferase NfeD PF01957.18 gi|48478579|ref|YP_024285.1| - 1.7e-11 44.3 0.0 2.1e-11 44.0 0.0 1.1 1 0 0 1 1 1 1 NfeD-like C-terminal, partner-binding SH3_15 PF18346.1 gi|48478579|ref|YP_024285.1| - 0.07 13.5 0.0 0.21 11.9 0.0 1.8 2 0 0 2 2 2 0 Mind bomb SH3 repeat domain SH3_12 PF18129.1 gi|48478579|ref|YP_024285.1| - 0.093 12.8 0.1 0.17 12.0 0.0 1.5 2 0 0 2 2 2 0 Xrn1 SH3-like domain XdhC_C PF13478.6 gi|48478580|ref|YP_024286.1| - 1.3e-12 48.3 0.0 7.6e-12 45.8 0.0 2.0 2 0 0 2 2 2 1 XdhC Rossmann domain XdhC_CoxI PF02625.16 gi|48478580|ref|YP_024286.1| - 6.7e-08 32.6 0.0 1.4e-07 31.6 0.0 1.5 1 0 0 1 1 1 1 XdhC and CoxI family AA_permease PF00324.21 gi|48478581|ref|YP_024287.1| - 9.7e-54 182.7 56.7 1.9e-53 181.7 56.7 1.5 1 1 0 1 1 1 1 Amino acid permease AA_permease_2 PF13520.6 gi|48478581|ref|YP_024287.1| - 3.7e-51 174.3 58.4 5e-51 173.9 58.4 1.2 1 0 0 1 1 1 1 Amino acid permease Spore_permease PF03845.13 gi|48478581|ref|YP_024287.1| - 2.6e-08 33.1 24.8 2.6e-08 33.1 24.8 2.9 2 1 0 2 2 2 1 Spore germination protein UL42 PF17638.2 gi|48478581|ref|YP_024287.1| - 0.85 9.6 0.0 0.85 9.6 0.0 3.7 4 1 1 5 5 5 0 HCMV UL42 Penicil_amidase PF01804.18 gi|48478583|ref|YP_024289.1| - 3.1e-144 482.5 0.0 3.7e-144 482.3 0.0 1.0 1 0 0 1 1 1 1 Penicillin amidase PIN PF01850.21 gi|48478584|ref|YP_024290.1| - 8e-19 68.3 4.8 9.9e-19 68.0 4.8 1.0 1 0 0 1 1 1 1 PIN domain DUF3236 PF11576.8 gi|48478584|ref|YP_024290.1| - 0.63 9.7 6.5 0.16 11.6 2.1 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF3236) DUF4518 PF15008.6 gi|48478585|ref|YP_024291.1| - 0.041 13.1 0.1 0.042 13.0 0.1 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4518) ETC_C1_NDUFA4 PF04800.12 gi|48478585|ref|YP_024291.1| - 0.092 13.0 0.0 0.11 12.8 0.0 1.1 1 0 0 1 1 1 0 ETC complex I subunit conserved region PGK PF00162.19 gi|48478586|ref|YP_024292.1| - 1.1e-96 324.1 0.0 1.2e-96 324.0 0.0 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase Prefoldin PF02996.17 gi|48478587|ref|YP_024293.1| - 8.5e-20 70.9 2.3 1e-19 70.6 2.3 1.1 1 0 0 1 1 1 1 Prefoldin subunit Prefoldin_2 PF01920.20 gi|48478587|ref|YP_024293.1| - 3.7e-06 26.9 5.0 0.00012 21.9 0.7 2.2 2 0 0 2 2 2 1 Prefoldin subunit HAUS-augmin3 PF14932.6 gi|48478587|ref|YP_024293.1| - 0.00034 20.3 4.0 0.01 15.4 1.1 2.0 2 0 0 2 2 2 1 HAUS augmin-like complex subunit 3 AAA_13 PF13166.6 gi|48478587|ref|YP_024293.1| - 0.00065 18.5 4.3 0.00078 18.2 4.3 1.1 1 0 0 1 1 1 1 AAA domain STAT_alpha PF01017.20 gi|48478587|ref|YP_024293.1| - 0.0018 18.2 2.0 0.0025 17.7 2.0 1.2 1 0 0 1 1 1 1 STAT protein, all-alpha domain CLZ PF16526.5 gi|48478587|ref|YP_024293.1| - 0.0021 18.3 5.4 1.2 9.5 0.0 2.6 2 1 0 2 2 2 1 C-terminal leucine zipper domain of cyclic nucleotide-gated channels Spc24 PF08286.11 gi|48478587|ref|YP_024293.1| - 0.0022 18.2 10.0 0.046 14.0 5.2 2.1 2 0 0 2 2 2 1 Spc24 subunit of Ndc80 DUF4795 PF16043.5 gi|48478587|ref|YP_024293.1| - 0.0036 17.0 7.9 0.096 12.3 3.0 2.0 1 1 1 2 2 2 2 Domain of unknown function (DUF4795) DUF948 PF06103.11 gi|48478587|ref|YP_024293.1| - 0.0039 17.4 0.7 0.13 12.5 0.1 2.2 2 0 0 2 2 2 1 Bacterial protein of unknown function (DUF948) RasGAP_C PF03836.15 gi|48478587|ref|YP_024293.1| - 0.006 16.7 6.0 0.27 11.4 0.0 2.1 2 0 0 2 2 2 1 RasGAP C-terminus DUF1043 PF06295.12 gi|48478587|ref|YP_024293.1| - 0.0079 16.2 2.7 0.44 10.6 0.2 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF1043) PI3K_P85_iSH2 PF16454.5 gi|48478587|ref|YP_024293.1| - 0.0086 15.7 1.4 0.0086 15.7 1.4 1.9 2 0 0 2 2 2 1 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain DUF4140 PF13600.6 gi|48478587|ref|YP_024293.1| - 0.012 16.0 1.1 0.77 10.2 0.1 2.2 2 0 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) Vps5 PF09325.10 gi|48478587|ref|YP_024293.1| - 0.013 15.1 0.6 0.013 15.1 0.6 2.0 2 0 0 2 2 2 0 Vps5 C terminal like APG6_N PF17675.1 gi|48478587|ref|YP_024293.1| - 0.013 16.1 6.2 0.033 14.7 6.2 1.6 1 1 0 1 1 1 0 Apg6 coiled-coil region ADIP PF11559.8 gi|48478587|ref|YP_024293.1| - 0.015 15.3 11.1 0.42 10.7 5.4 2.1 2 0 0 2 2 2 0 Afadin- and alpha -actinin-Binding SlyX PF04102.12 gi|48478587|ref|YP_024293.1| - 0.022 15.4 8.8 1.5 9.5 4.0 2.3 2 0 0 2 2 2 0 SlyX Phage_GP20 PF06810.11 gi|48478587|ref|YP_024293.1| - 0.025 14.4 6.8 2.4 8.0 3.5 2.1 2 0 0 2 2 2 0 Phage minor structural protein GP20 Muted PF14942.6 gi|48478587|ref|YP_024293.1| - 0.028 14.7 7.3 2 8.8 3.2 2.1 2 0 0 2 2 2 0 Organelle biogenesis, Muted-like protein DUF4407 PF14362.6 gi|48478587|ref|YP_024293.1| - 0.03 13.7 1.5 0.077 12.3 1.5 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) Tektin PF03148.14 gi|48478587|ref|YP_024293.1| - 0.037 12.8 10.4 0.087 11.6 4.9 2.0 2 0 0 2 2 2 0 Tektin family Seryl_tRNA_N PF02403.22 gi|48478587|ref|YP_024293.1| - 0.038 14.2 6.0 0.37 11.0 1.8 2.2 2 0 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain UPF0242 PF06785.11 gi|48478587|ref|YP_024293.1| - 0.04 14.0 5.1 0.12 12.4 1.3 2.0 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0242) N-terminus CENP-F_leu_zip PF10473.9 gi|48478587|ref|YP_024293.1| - 0.045 13.8 12.2 1.6 8.8 0.2 2.1 2 0 0 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF812 PF05667.11 gi|48478587|ref|YP_024293.1| - 0.048 12.5 8.2 0.25 10.2 8.2 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF812) TMF_TATA_bd PF12325.8 gi|48478587|ref|YP_024293.1| - 0.055 13.7 6.9 0.084 13.1 2.0 2.1 2 0 0 2 2 2 0 TATA element modulatory factor 1 TATA binding Syntaxin-6_N PF09177.11 gi|48478587|ref|YP_024293.1| - 0.056 14.0 6.2 1.6 9.3 1.7 2.8 2 1 0 2 2 2 0 Syntaxin 6, N-terminal FlxA PF14282.6 gi|48478587|ref|YP_024293.1| - 0.063 13.3 11.6 0.36 10.8 5.7 2.2 2 0 0 2 2 2 0 FlxA-like protein Lectin_N PF03954.14 gi|48478587|ref|YP_024293.1| - 0.065 13.0 4.2 0.75 9.5 0.5 2.1 2 0 0 2 2 2 0 Hepatic lectin, N-terminal domain BLOC1_2 PF10046.9 gi|48478587|ref|YP_024293.1| - 0.09 13.1 8.7 0.11 12.8 3.8 2.3 2 0 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 AbiGi PF10899.8 gi|48478587|ref|YP_024293.1| - 0.094 12.6 1.4 0.16 11.8 0.3 1.7 1 1 0 2 2 2 0 Putative abortive phage resistance protein AbiGi, antitoxin DUF4618 PF15397.6 gi|48478587|ref|YP_024293.1| - 0.11 11.9 8.0 1.4 8.3 3.2 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4618) DUF4988 PF16378.5 gi|48478587|ref|YP_024293.1| - 0.13 11.9 5.6 0.77 9.4 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function Baculo_PEP_C PF04513.12 gi|48478587|ref|YP_024293.1| - 0.15 12.1 10.4 0.47 10.5 2.5 2.1 2 0 0 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus V_ATPase_I PF01496.19 gi|48478587|ref|YP_024293.1| - 0.16 9.9 5.0 0.16 9.8 1.7 1.8 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family DASH_Dad4 PF08650.10 gi|48478587|ref|YP_024293.1| - 0.17 11.9 11.1 0.64 10.0 8.2 2.2 2 0 0 2 2 2 0 DASH complex subunit Dad4 HMMR_N PF15905.5 gi|48478587|ref|YP_024293.1| - 0.17 11.3 8.9 1.9 7.9 0.2 2.0 2 0 0 2 2 2 0 Hyaluronan mediated motility receptor N-terminal DivIC PF04977.15 gi|48478587|ref|YP_024293.1| - 0.17 11.7 6.3 0.21 11.4 1.9 2.4 2 0 0 2 2 2 0 Septum formation initiator Fib_alpha PF08702.10 gi|48478587|ref|YP_024293.1| - 0.18 12.0 11.7 0.82 9.9 0.5 2.1 2 0 0 2 2 2 0 Fibrinogen alpha/beta chain family Helo_like_N PF17111.5 gi|48478587|ref|YP_024293.1| - 0.18 11.1 5.3 0.14 11.5 1.3 2.0 2 0 0 2 2 2 0 Fungal N-terminal domain of STAND proteins TMF_DNA_bd PF12329.8 gi|48478587|ref|YP_024293.1| - 0.18 11.8 15.7 0.74 9.8 8.0 2.4 2 0 0 2 2 2 0 TATA element modulatory factor 1 DNA binding DUF5082 PF16888.5 gi|48478587|ref|YP_024293.1| - 0.18 12.1 10.0 1.4 9.2 10.0 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF5082) AI-2E_transport PF01594.16 gi|48478587|ref|YP_024293.1| - 0.21 10.7 2.0 1.6 7.8 0.2 2.0 2 0 0 2 2 2 0 AI-2E family transporter DUF2951 PF11166.8 gi|48478587|ref|YP_024293.1| - 0.21 11.8 3.5 0.23 11.7 2.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2951) Med21 PF11221.8 gi|48478587|ref|YP_024293.1| - 0.24 11.6 5.2 0.23 11.7 1.7 2.2 2 1 0 2 2 2 0 Subunit 21 of Mediator complex Noelin-1 PF12308.8 gi|48478587|ref|YP_024293.1| - 0.26 11.3 2.3 0.93 9.5 0.4 2.1 2 0 0 2 2 2 0 Neurogenesis glycoprotein Laminin_II PF06009.12 gi|48478587|ref|YP_024293.1| - 0.28 11.2 7.1 1 9.4 2.8 2.1 2 0 0 2 2 2 0 Laminin Domain II Enkurin PF13864.6 gi|48478587|ref|YP_024293.1| - 0.29 11.6 7.2 3.6 8.1 0.1 3.3 1 1 2 3 3 3 0 Calmodulin-binding Spc7 PF08317.11 gi|48478587|ref|YP_024293.1| - 0.33 9.8 8.0 1.4 7.7 4.3 2.0 2 0 0 2 2 2 0 Spc7 kinetochore protein DUF4200 PF13863.6 gi|48478587|ref|YP_024293.1| - 0.39 11.1 8.0 1.4 9.3 3.2 2.5 2 1 0 2 2 2 0 Domain of unknown function (DUF4200) TPR_MLP1_2 PF07926.12 gi|48478587|ref|YP_024293.1| - 0.42 10.7 12.6 2.9 7.9 0.2 2.1 2 0 0 2 2 2 0 TPR/MLP1/MLP2-like protein DUF2203 PF09969.9 gi|48478587|ref|YP_024293.1| - 0.62 10.8 2.6 6.1 7.6 2.6 2.1 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2203) Jnk-SapK_ap_N PF09744.9 gi|48478587|ref|YP_024293.1| - 0.81 9.9 9.6 1.8 8.7 4.1 2.1 2 0 0 2 2 2 0 JNK_SAPK-associated protein-1 Tropomyosin_1 PF12718.7 gi|48478587|ref|YP_024293.1| - 0.83 9.8 10.6 6.5 6.9 4.6 2.2 2 0 0 2 2 2 0 Tropomyosin like NPV_P10 PF05531.12 gi|48478587|ref|YP_024293.1| - 0.85 10.1 6.2 3.1 8.3 1.7 2.3 2 0 0 2 2 2 0 Nucleopolyhedrovirus P10 protein DUF1664 PF07889.12 gi|48478587|ref|YP_024293.1| - 0.88 9.6 4.2 5.4 7.1 1.2 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) RRP36 PF06102.12 gi|48478587|ref|YP_024293.1| - 1 9.3 6.1 5.3 7.0 6.1 1.9 1 1 0 1 1 1 0 rRNA biogenesis protein RRP36 EMP24_GP25L PF01105.24 gi|48478587|ref|YP_024293.1| - 1.2 9.0 8.4 5.8 6.8 0.3 2.1 1 1 1 2 2 2 0 emp24/gp25L/p24 family/GOLD Rab_bind PF16704.5 gi|48478587|ref|YP_024293.1| - 1.3 9.1 6.9 0.83 9.7 2.7 2.2 2 1 0 2 2 2 0 Rab binding domain FlaC_arch PF05377.11 gi|48478587|ref|YP_024293.1| - 1.6 9.2 8.7 11 6.5 1.2 2.9 2 1 0 2 2 2 0 Flagella accessory protein C (FlaC) DASH_Dam1 PF08653.10 gi|48478587|ref|YP_024293.1| - 1.9 8.3 7.9 0.54 10.1 1.8 2.6 2 1 0 2 2 2 0 DASH complex subunit Dam1 XhlA PF10779.9 gi|48478587|ref|YP_024293.1| - 2.2 8.6 13.1 9.9 6.4 0.1 2.6 2 1 1 3 3 2 0 Haemolysin XhlA DASH_Dad3 PF08656.10 gi|48478587|ref|YP_024293.1| - 2.9 8.1 11.0 5.7 7.1 4.7 2.7 2 1 0 2 2 2 0 DASH complex subunit Dad3 DUF3450 PF11932.8 gi|48478587|ref|YP_024293.1| - 2.9 7.1 10.1 12 5.1 4.7 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF3450) FAM76 PF16046.5 gi|48478587|ref|YP_024293.1| - 3.8 6.8 5.9 16 4.7 1.7 2.0 1 1 0 2 2 2 0 FAM76 protein BST2 PF16716.5 gi|48478587|ref|YP_024293.1| - 4.8 7.8 10.4 7.1 7.3 5.4 2.2 2 0 0 2 2 2 0 Bone marrow stromal antigen 2 Uso1_p115_C PF04871.13 gi|48478587|ref|YP_024293.1| - 5 7.5 11.1 13 6.2 5.3 2.1 2 0 0 2 2 2 0 Uso1 / p115 like vesicle tethering protein, C terminal region DASH_Dad1 PF08649.10 gi|48478587|ref|YP_024293.1| - 6 7.1 10.4 0.77 10.0 5.3 2.2 2 1 0 2 2 1 0 DASH complex subunit Dad1 CENP-Q PF13094.6 gi|48478587|ref|YP_024293.1| - 7 6.8 12.2 3.5 7.8 5.9 2.1 2 0 0 2 2 2 0 CENP-Q, a CENPA-CAD centromere complex subunit YabA PF06156.13 gi|48478587|ref|YP_024293.1| - 7.2 7.3 9.4 32 5.3 5.8 2.1 2 0 0 2 2 2 0 Initiation control protein YabA SRP54 PF00448.22 gi|48478588|ref|YP_024294.1| - 3.4e-75 252.0 0.4 5.7e-75 251.3 0.4 1.4 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain cobW PF02492.19 gi|48478588|ref|YP_024294.1| - 2.2e-06 27.3 0.4 4.9e-06 26.2 0.4 1.5 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 gi|48478588|ref|YP_024294.1| - 7.6e-06 25.8 0.1 1.5e-05 24.8 0.1 1.5 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.12 gi|48478588|ref|YP_024294.1| - 0.00026 20.4 0.1 0.00049 19.4 0.1 1.5 1 0 0 1 1 1 1 Zeta toxin SRP54_N PF02881.19 gi|48478588|ref|YP_024294.1| - 0.00043 20.4 3.3 0.00043 20.4 3.3 2.7 1 1 1 2 2 2 1 SRP54-type protein, helical bundle domain AAA_17 PF13207.6 gi|48478588|ref|YP_024294.1| - 0.0006 20.3 0.1 0.0006 20.3 0.1 2.3 2 1 0 2 2 2 1 AAA domain CbiA PF01656.23 gi|48478588|ref|YP_024294.1| - 0.00061 19.8 1.5 0.0037 17.3 0.2 2.6 2 1 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain DUF2075 PF09848.9 gi|48478588|ref|YP_024294.1| - 0.003 16.9 0.1 0.003 16.9 0.1 1.6 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) APS_kinase PF01583.20 gi|48478588|ref|YP_024294.1| - 0.0035 17.3 0.0 0.0073 16.2 0.0 1.5 1 0 0 1 1 1 1 Adenylylsulphate kinase COMPASS-Shg1 PF05205.12 gi|48478588|ref|YP_024294.1| - 0.0037 17.9 6.1 0.0075 17.0 6.1 1.6 1 0 0 1 1 1 1 COMPASS (Complex proteins associated with Set1p) component shg1 AAA PF00004.29 gi|48478588|ref|YP_024294.1| - 0.0075 16.7 0.3 0.0075 16.7 0.3 2.4 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|48478588|ref|YP_024294.1| - 0.008 16.6 0.0 0.024 15.0 0.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain MMR_HSR1 PF01926.23 gi|48478588|ref|YP_024294.1| - 0.0097 16.0 0.5 0.0097 16.0 0.5 2.0 2 2 0 2 2 2 1 50S ribosome-binding GTPase AAA_7 PF12775.7 gi|48478588|ref|YP_024294.1| - 0.013 15.0 0.1 0.11 11.9 0.0 2.1 2 0 0 2 2 2 0 P-loop containing dynein motor region Dala_Dala_lig_N PF01820.21 gi|48478588|ref|YP_024294.1| - 0.016 15.7 0.0 0.25 11.8 0.0 2.5 1 1 0 1 1 1 0 D-ala D-ala ligase N-terminus AAA_22 PF13401.6 gi|48478588|ref|YP_024294.1| - 0.02 15.1 0.5 0.06 13.6 0.1 2.0 2 1 0 2 2 2 0 AAA domain Thymidylate_kin PF02223.17 gi|48478588|ref|YP_024294.1| - 0.021 14.5 2.6 0.028 14.1 0.1 2.4 3 1 0 3 3 3 0 Thymidylate kinase T2SSE PF00437.20 gi|48478588|ref|YP_024294.1| - 0.026 13.6 0.2 0.11 11.6 0.4 2.0 2 1 0 2 2 2 0 Type II/IV secretion system protein RsgA_GTPase PF03193.16 gi|48478588|ref|YP_024294.1| - 0.03 14.2 0.1 0.067 13.1 0.1 1.6 1 0 0 1 1 1 0 RsgA GTPase AAA_19 PF13245.6 gi|48478588|ref|YP_024294.1| - 0.03 14.6 0.4 0.066 13.5 0.4 1.8 1 1 0 1 1 1 0 AAA domain PIF1 PF05970.14 gi|48478588|ref|YP_024294.1| - 0.031 13.5 3.0 0.079 12.1 0.0 2.1 2 0 0 2 2 2 0 PIF1-like helicase ABC_tran PF00005.27 gi|48478588|ref|YP_024294.1| - 0.031 14.8 1.3 0.12 12.9 0.0 2.1 2 0 0 2 2 2 0 ABC transporter MeaB PF03308.16 gi|48478588|ref|YP_024294.1| - 0.046 12.7 0.1 0.046 12.7 0.1 1.9 2 1 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB NTPase_1 PF03266.15 gi|48478588|ref|YP_024294.1| - 0.048 13.6 3.7 0.31 10.9 1.3 2.7 2 1 0 2 2 2 0 NTPase AAA_33 PF13671.6 gi|48478588|ref|YP_024294.1| - 0.049 13.8 0.0 0.097 12.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|48478588|ref|YP_024294.1| - 0.056 13.2 0.1 0.12 12.1 0.1 1.6 1 0 0 1 1 1 0 AAA domain Helicase_RecD PF05127.14 gi|48478588|ref|YP_024294.1| - 0.061 13.2 0.1 0.061 13.2 0.1 2.3 2 1 1 3 3 3 0 Helicase NACHT PF05729.12 gi|48478588|ref|YP_024294.1| - 0.08 12.8 0.1 1.7 8.6 0.1 2.3 2 0 0 2 2 2 0 NACHT domain MobB PF03205.14 gi|48478588|ref|YP_024294.1| - 0.13 12.2 1.9 0.43 10.5 0.4 2.3 1 1 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B DUF2855 PF11017.8 gi|48478588|ref|YP_024294.1| - 0.14 11.9 0.0 0.55 9.9 0.0 1.7 1 1 0 2 2 2 0 Protein of unknown function (DUF2855) Creatinase_N_2 PF16189.5 gi|48478588|ref|YP_024294.1| - 0.15 12.1 2.0 0.49 10.5 0.5 2.4 2 1 1 3 3 3 0 Creatinase/Prolidase N-terminal domain GTP_EFTU PF00009.27 gi|48478588|ref|YP_024294.1| - 0.23 11.0 2.8 0.094 12.2 0.3 1.7 2 0 0 2 2 2 0 Elongation factor Tu GTP binding domain ResIII PF04851.15 gi|48478588|ref|YP_024294.1| - 0.36 10.8 9.1 0.026 14.5 1.3 2.5 1 1 1 2 2 2 0 Type III restriction enzyme, res subunit AAA_18 PF13238.6 gi|48478588|ref|YP_024294.1| - 0.89 10.1 4.4 0.85 10.2 0.5 2.6 2 1 0 2 2 2 0 AAA domain AAA_31 PF13614.6 gi|48478588|ref|YP_024294.1| - 1.3 8.9 13.6 0.22 11.4 1.9 2.8 1 1 1 2 2 2 0 AAA domain HTH_3 PF01381.22 gi|48478589|ref|YP_024295.1| - 8.4e-11 41.8 0.0 2e-09 37.4 0.0 2.5 2 0 0 2 2 2 1 Helix-turn-helix HTH_19 PF12844.7 gi|48478589|ref|YP_024295.1| - 1.4e-06 28.2 0.1 4.3e-06 26.7 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|48478589|ref|YP_024295.1| - 0.00019 21.7 0.0 0.00034 20.9 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_37 PF13744.6 gi|48478589|ref|YP_024295.1| - 0.05 13.6 0.0 0.095 12.7 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain AFP_2 PF18815.1 gi|48478589|ref|YP_024295.1| - 0.13 12.5 0.1 35 4.7 0.0 2.9 2 0 0 2 2 2 0 Bacterial antifreeze protein repeat PPDK_N PF01326.19 gi|48478591|ref|YP_024297.1| - 6e-109 364.3 1.4 9.2e-109 363.7 1.4 1.3 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers_C PF02896.18 gi|48478591|ref|YP_024297.1| - 2e-69 233.9 0.0 3.1e-69 233.3 0.0 1.2 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilizers PF00391.23 gi|48478591|ref|YP_024297.1| - 1.5e-23 82.3 0.2 3.5e-23 81.1 0.2 1.7 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain Acetyltransf_1 PF00583.25 gi|48478592|ref|YP_024298.1| - 0.0029 17.8 0.0 0.0047 17.2 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family SnoaL_2 PF12680.7 gi|48478593|ref|YP_024299.1| - 3.2e-15 56.6 0.0 4e-15 56.3 0.0 1.0 1 0 0 1 1 1 1 SnoaL-like domain SnoaL PF07366.12 gi|48478593|ref|YP_024299.1| - 2.7e-09 36.9 0.0 5.4e-09 35.9 0.0 1.3 1 1 0 1 1 1 1 SnoaL-like polyketide cyclase LEH PF07858.12 gi|48478593|ref|YP_024299.1| - 2.8e-05 24.2 0.0 3.2e-05 24.0 0.0 1.0 1 0 0 1 1 1 1 Limonene-1,2-epoxide hydrolase catalytic domain NTF2 PF02136.20 gi|48478593|ref|YP_024299.1| - 0.00022 21.8 0.0 0.00026 21.5 0.0 1.2 1 0 0 1 1 1 1 Nuclear transport factor 2 (NTF2) domain SnoaL_3 PF13474.6 gi|48478593|ref|YP_024299.1| - 0.0023 18.2 0.0 0.003 17.8 0.0 1.4 1 1 0 1 1 1 1 SnoaL-like domain SnoaL_4 PF13577.6 gi|48478593|ref|YP_024299.1| - 0.0096 16.0 0.0 0.01 16.0 0.0 1.1 1 0 0 1 1 1 1 SnoaL-like domain DUF4440 PF14534.6 gi|48478593|ref|YP_024299.1| - 0.013 15.9 0.0 0.015 15.7 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4440) AhpC-TSA PF00578.21 gi|48478594|ref|YP_024300.1| - 2.7e-33 114.5 0.0 3.5e-33 114.2 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|48478594|ref|YP_024300.1| - 2.7e-14 53.1 0.0 3.4e-14 52.8 0.0 1.1 1 0 0 1 1 1 1 Redoxin 1-cysPrx_C PF10417.9 gi|48478594|ref|YP_024300.1| - 0.0059 16.4 0.1 0.013 15.4 0.1 1.4 1 0 0 1 1 1 1 C-terminal domain of 1-Cys peroxiredoxin Myosin_TH1 PF06017.13 gi|48478594|ref|YP_024300.1| - 0.18 11.5 0.0 0.34 10.6 0.0 1.4 1 1 0 1 1 1 0 Unconventional myosin tail, actin- and lipid-binding Regulator_TrmB PF11495.8 gi|48478595|ref|YP_024301.1| - 4.8e-64 215.7 0.6 5.8e-64 215.5 0.6 1.1 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB TrmB PF01978.19 gi|48478595|ref|YP_024301.1| - 3.2e-22 78.2 0.2 1.7e-21 75.9 0.0 2.1 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB Glyco_transf_10 PF00852.19 gi|48478595|ref|YP_024301.1| - 0.025 14.3 0.1 0.046 13.4 0.1 1.4 1 0 0 1 1 1 0 Glycosyltransferase family 10 (fucosyltransferase) C-term HTH_5 PF01022.20 gi|48478595|ref|YP_024301.1| - 0.07 13.0 0.0 0.19 11.6 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family DUF2990 PF11693.8 gi|48478595|ref|YP_024301.1| - 0.11 12.6 0.1 0.28 11.4 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2990) Ribosomal_S3Ae PF01015.18 gi|48478596|ref|YP_024302.1| - 4.2e-51 173.4 0.9 4.8e-51 173.2 0.9 1.0 1 0 0 1 1 1 1 Ribosomal S3Ae family Phosphodiest PF01663.22 gi|48478598|ref|YP_024304.1| - 8.9e-27 94.6 0.5 1.3e-25 90.8 0.5 2.1 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase PglZ PF08665.12 gi|48478598|ref|YP_024304.1| - 4.1e-06 27.0 0.0 0.022 14.8 0.0 2.3 2 0 0 2 2 2 2 PglZ domain Aminotran_5 PF00266.19 gi|48478599|ref|YP_024305.1| - 3.9e-40 138.0 0.0 5.4e-40 137.5 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|48478599|ref|YP_024305.1| - 7e-06 24.8 0.4 1e-05 24.3 0.4 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.17 gi|48478599|ref|YP_024305.1| - 5e-05 22.8 0.0 0.00021 20.7 0.0 1.8 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_1_2 PF00155.21 gi|48478599|ref|YP_024305.1| - 0.0022 17.2 0.1 0.0079 15.4 0.1 1.7 2 0 0 2 2 2 1 Aminotransferase class I and II SelA PF03841.13 gi|48478599|ref|YP_024305.1| - 0.14 11.1 0.0 0.19 10.7 0.0 1.2 1 0 0 1 1 1 0 L-seryl-tRNA selenium transferase HTH_24 PF13412.6 gi|48478600|ref|YP_024306.1| - 8.4e-06 25.2 0.4 0.017 14.7 0.1 2.6 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|48478600|ref|YP_024306.1| - 0.0017 18.2 0.0 0.0053 16.6 0.2 1.8 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|48478600|ref|YP_024306.1| - 0.047 13.7 0.1 0.66 10.0 0.1 2.5 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain MarR_2 PF12802.7 gi|48478600|ref|YP_024306.1| - 0.057 13.3 0.0 0.3 11.0 0.0 2.0 2 0 0 2 2 2 0 MarR family Sigma70_r4_2 PF08281.12 gi|48478600|ref|YP_024306.1| - 0.097 12.4 0.0 0.2 11.4 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_23 PF13384.6 gi|48478600|ref|YP_024306.1| - 0.12 12.2 0.0 0.29 11.0 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain MMPL PF03176.15 gi|48478601|ref|YP_024307.1| - 7.4e-52 176.3 19.6 6.1e-27 94.4 5.3 2.6 2 0 0 2 2 2 2 MMPL family MFS_1 PF07690.16 gi|48478602|ref|YP_024308.1| - 5.6e-54 183.4 48.8 4e-40 137.8 23.8 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|48478602|ref|YP_024308.1| - 5.9e-16 58.4 35.0 8.2e-09 34.8 15.8 2.9 1 1 1 2 2 2 2 Sugar (and other) transporter MFS_1_like PF12832.7 gi|48478602|ref|YP_024308.1| - 2.5e-11 43.1 28.9 7.4e-06 25.1 21.8 2.3 1 1 1 2 2 2 2 MFS_1 like family MFS_2 PF13347.6 gi|48478602|ref|YP_024308.1| - 4.1e-09 35.5 32.7 5.7e-05 21.9 1.1 2.3 1 1 1 2 2 2 2 MFS/sugar transport protein MFS_3 PF05977.13 gi|48478602|ref|YP_024308.1| - 3.4e-06 25.7 12.0 3.2e-05 22.5 12.0 1.9 1 1 0 1 1 1 1 Transmembrane secretion effector PUCC PF03209.15 gi|48478602|ref|YP_024308.1| - 0.00012 21.2 17.7 0.00065 18.8 17.7 2.0 1 1 0 1 1 1 1 PUCC protein DUF2304 PF10066.9 gi|48478603|ref|YP_024309.1| - 0.016 15.4 0.7 0.032 14.4 0.7 1.4 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2304) Sod_Fe_C PF02777.18 gi|48478603|ref|YP_024309.1| - 0.13 12.5 0.2 0.25 11.5 0.1 1.6 2 0 0 2 2 2 0 Iron/manganese superoxide dismutases, C-terminal domain Amino_oxidase PF01593.24 gi|48478604|ref|YP_024310.1| - 1.9e-22 80.2 0.0 2.6e-22 79.8 0.0 1.1 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.6 gi|48478604|ref|YP_024310.1| - 6.1e-11 42.4 0.0 1.4e-10 41.3 0.0 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|48478604|ref|YP_024310.1| - 1e-05 25.3 0.0 5.8e-05 22.8 0.0 1.9 2 0 0 2 2 2 1 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|48478604|ref|YP_024310.1| - 0.00022 20.1 0.0 0.014 14.1 0.1 2.1 2 0 0 2 2 2 1 HI0933-like protein FAD_binding_2 PF00890.24 gi|48478604|ref|YP_024310.1| - 0.0013 17.9 0.0 0.0018 17.4 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain FAD_binding_3 PF01494.19 gi|48478604|ref|YP_024310.1| - 0.0024 17.2 0.0 0.0036 16.6 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.14 gi|48478604|ref|YP_024310.1| - 0.008 15.4 0.1 0.014 14.6 0.1 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|48478604|ref|YP_024310.1| - 0.01 15.1 0.1 0.015 14.5 0.1 1.2 1 0 0 1 1 1 0 Thi4 family Pyr_redox PF00070.27 gi|48478604|ref|YP_024310.1| - 0.015 15.8 0.1 0.038 14.5 0.1 1.6 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|48478604|ref|YP_024310.1| - 0.019 14.3 0.0 0.031 13.6 0.0 1.3 1 0 0 1 1 1 0 FAD dependent oxidoreductase Lycopene_cycl PF05834.12 gi|48478604|ref|YP_024310.1| - 0.068 12.2 0.0 0.1 11.6 0.0 1.2 1 0 0 1 1 1 0 Lycopene cyclase protein TrkA_N PF02254.18 gi|48478604|ref|YP_024310.1| - 0.084 13.1 0.1 0.15 12.3 0.1 1.4 1 0 0 1 1 1 0 TrkA-N domain UDPG_MGDP_dh_N PF03721.14 gi|48478604|ref|YP_024310.1| - 0.12 12.0 1.1 0.57 9.7 0.1 2.3 3 0 0 3 3 3 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Trp_halogenase PF04820.14 gi|48478604|ref|YP_024310.1| - 0.19 10.6 0.2 0.33 9.8 0.2 1.4 1 0 0 1 1 1 0 Tryptophan halogenase Glycos_transf_2 PF00535.26 gi|48478605|ref|YP_024311.1| - 1.1e-14 54.6 2.6 1e-13 51.4 2.5 2.4 1 1 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|48478605|ref|YP_024311.1| - 0.00027 20.9 0.0 0.003 17.5 0.0 2.0 1 1 0 1 1 1 1 Glycosyltransferase like family 2 SQS_PSY PF00494.19 gi|48478607|ref|YP_024313.1| - 9.6e-38 130.2 0.0 1.2e-37 129.9 0.0 1.0 1 0 0 1 1 1 1 Squalene/phytoene synthase # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Picrophilus_torridus_DSM_9790_uid58041/NC_005877.faa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Picrophilus_torridus_DSM_9790_uid58041/NC_005877.PFam32-A --tblout /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Picrophilus_torridus_DSM_9790_uid58041/NC_005877.PFam32-A.tblout --cpu 20 /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Picrophilus_torridus_DSM_9790_uid58041/NC_005877.faa # Current dir: /oak/stanford/groups/akundaje/marinovg/genomes # Date: Mon Mar 25 16:07:44 2019 # [ok]