#                                                                       --- full sequence ---- --- best 1 domain ---- --- domain number estimation ----
# target name        accession  query name                   accession    E-value  score  bias   E-value  score  bias   exp reg clu  ov env dom rep inc description of target
#------------------- ----------         -------------------- ---------- --------- ------ ----- --------- ------ -----   --- --- --- --- --- --- --- --- ---------------------
Transposase_mut	PF00872.18	gi|76803368|ref|YP_327637.1|	-	1.7e-05	23.8	0.2	0.00072	18.5	0.2	2.2	1	1	0	1	1	1	1	Transposase,	Mutator	family
UPF0236	PF06782.11	gi|76803368|ref|YP_327637.1|	-	6e-05	21.9	0.4	0.0027	16.4	0.0	2.3	2	1	0	2	2	2	2	Uncharacterised	protein	family	(UPF0236)
Amidase02_C	PF12123.8	gi|76803368|ref|YP_327637.1|	-	0.11	12.2	0.0	0.23	11.2	0.0	1.4	1	0	0	1	1	1	0	N-acetylmuramoyl-l-alanine	amidase
DUF3107	PF11305.8	gi|76803369|ref|YP_327638.1|	-	0.15	12.3	0.0	0.18	12.1	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3107)
Sigma70_r4	PF04545.16	gi|76803370|ref|YP_327639.1|	-	0.032	13.7	0.1	0.13	11.8	0.0	2.1	2	0	0	2	2	2	0	Sigma-70,	region	4
DUF1450	PF07293.11	gi|76803370|ref|YP_327639.1|	-	0.12	12.2	0.1	0.24	11.2	0.1	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1450)
Scm3	PF10384.9	gi|76803370|ref|YP_327639.1|	-	0.16	11.7	0.2	0.98	9.2	0.0	2.3	3	0	0	3	3	3	0	Centromere	protein	Scm3
Mrr_N	PF14338.6	gi|76803372|ref|YP_327641.1|	-	0.048	13.8	0.0	0.058	13.5	0.0	1.3	1	1	0	1	1	1	0	Mrr	N-terminal	domain
PIN_9	PF18477.1	gi|76803373|ref|YP_327642.1|	-	0.18	12.2	0.0	0.27	11.6	0.0	1.3	1	0	0	1	1	1	0	PIN	like	domain
DUF3990	PF13151.6	gi|76803374|ref|YP_327643.1|	-	0.052	13.2	0.0	0.064	12.9	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3990)
RHH_1	PF01402.21	gi|76803374|ref|YP_327643.1|	-	0.076	13.0	1.1	0.12	12.3	0.1	1.9	2	0	0	2	2	2	0	Ribbon-helix-helix	protein,	copG	family
MarR_2	PF12802.7	gi|76803376|ref|YP_327645.1|	-	1.4e-06	28.1	0.1	2.4e-06	27.3	0.1	1.3	1	0	0	1	1	1	1	MarR	family
HTH_Crp_2	PF13545.6	gi|76803376|ref|YP_327645.1|	-	0.00029	20.7	0.2	0.00054	19.9	0.2	1.5	1	1	0	1	1	1	1	Crp-like	helix-turn-helix	domain
DUF2250	PF10007.9	gi|76803376|ref|YP_327645.1|	-	0.00042	20.4	0.1	0.00059	19.9	0.1	1.2	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
Rrf2	PF02082.20	gi|76803376|ref|YP_327645.1|	-	0.00073	19.8	0.0	0.0014	19.0	0.0	1.4	1	0	0	1	1	1	1	Transcriptional	regulator
HTH_27	PF13463.6	gi|76803376|ref|YP_327645.1|	-	0.001	19.5	0.0	0.0021	18.5	0.0	1.5	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
TrmB	PF01978.19	gi|76803376|ref|YP_327645.1|	-	0.0011	18.8	0.0	0.0021	17.9	0.0	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
Fe_dep_repress	PF01325.19	gi|76803376|ref|YP_327645.1|	-	0.0047	17.1	0.0	0.0078	16.4	0.0	1.3	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
MarR	PF01047.22	gi|76803376|ref|YP_327645.1|	-	0.0078	16.1	0.0	0.014	15.3	0.0	1.5	1	0	0	1	1	1	1	MarR	family
HTH_24	PF13412.6	gi|76803376|ref|YP_327645.1|	-	0.035	13.7	0.0	0.058	13.0	0.0	1.4	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HTH_IclR	PF09339.10	gi|76803376|ref|YP_327645.1|	-	0.055	13.3	0.1	0.087	12.6	0.1	1.3	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
HTH_11	PF08279.12	gi|76803376|ref|YP_327645.1|	-	0.066	13.2	0.1	0.12	12.3	0.1	1.3	1	0	0	1	1	1	0	HTH	domain
HTH_45	PF14947.6	gi|76803376|ref|YP_327645.1|	-	0.066	13.2	0.0	0.09	12.8	0.0	1.2	1	0	0	1	1	1	0	Winged	helix-turn-helix
Trypan_PARP	PF05887.11	gi|76803378|ref|YP_327647.1|	-	5.4e-07	29.7	22.8	1.1e-06	28.7	22.8	1.6	1	0	0	1	1	1	1	Procyclic	acidic	repetitive	protein	(PARP)
TonB_N	PF16031.5	gi|76803378|ref|YP_327647.1|	-	0.17	12.4	17.0	0.29	11.7	17.0	1.3	1	0	0	1	1	1	0	TonB	polyproline	region
SPESP1	PF15754.5	gi|76803378|ref|YP_327647.1|	-	0.43	9.7	7.5	0.76	8.9	7.5	1.4	1	0	0	1	1	1	0	Sperm	equatorial	segment	protein	1
Jag_N	PF14804.6	gi|76803379|ref|YP_327648.1|	-	0.073	13.4	0.1	0.13	12.7	0.1	1.4	1	1	0	1	1	1	0	Jag	N-terminus
PAS_3	PF08447.12	gi|76803380|ref|YP_327649.1|	-	8e-53	176.7	4.9	1.7e-17	63.5	0.0	4.5	4	0	0	4	4	4	3	PAS	fold
PAS_4	PF08448.10	gi|76803380|ref|YP_327649.1|	-	2.7e-26	92.0	8.8	4.3e-12	46.2	0.3	3.9	4	0	0	4	4	4	2	PAS	fold
PAS	PF00989.25	gi|76803380|ref|YP_327649.1|	-	3.6e-25	88.2	1.6	2.7e-14	53.1	0.1	3.8	3	0	0	3	3	3	2	PAS	fold
Response_reg	PF00072.24	gi|76803380|ref|YP_327649.1|	-	3.6e-22	78.7	0.0	1.2e-21	76.9	0.0	2.0	1	1	0	1	1	1	1	Response	regulator	receiver	domain
PAS_9	PF13426.7	gi|76803380|ref|YP_327649.1|	-	2.3e-21	76.0	1.3	1.3e-08	35.0	0.0	3.9	4	0	0	4	4	4	2	PAS	domain
HATPase_c	PF02518.26	gi|76803380|ref|YP_327649.1|	-	8.5e-18	64.9	0.1	3.3e-17	63.0	0.1	2.0	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_11	PF14598.6	gi|76803380|ref|YP_327649.1|	-	8.6e-13	48.4	0.1	2.2e-09	37.4	0.1	2.9	3	0	0	3	3	3	2	PAS	domain
HisKA	PF00512.25	gi|76803380|ref|YP_327649.1|	-	5.3e-11	42.4	1.1	5.3e-11	42.4	1.1	4.1	5	0	0	5	5	5	1	His	Kinase	A	(phospho-acceptor)	domain
PAS_10	PF13596.6	gi|76803380|ref|YP_327649.1|	-	8.7e-09	35.9	0.2	0.00013	22.5	0.1	3.2	2	1	0	2	2	2	2	PAS	domain
PAS_8	PF13188.7	gi|76803380|ref|YP_327649.1|	-	1.3e-06	28.3	0.1	0.015	15.3	0.0	3.2	2	0	0	2	2	2	2	PAS	domain
Strep_his_triad	PF04270.13	gi|76803380|ref|YP_327649.1|	-	0.0056	16.6	0.0	0.018	15.0	0.0	1.9	1	0	0	1	1	1	1	Streptococcal	histidine	triad	protein
HATPase_c_5	PF14501.6	gi|76803380|ref|YP_327649.1|	-	0.054	13.4	0.0	1	9.3	0.0	2.4	2	0	0	2	2	2	0	GHKL	domain
PAS_12	PF18095.1	gi|76803380|ref|YP_327649.1|	-	0.058	13.0	0.0	0.25	11.0	0.0	2.0	2	0	0	2	2	2	0	UPF0242	C-terminal	PAS-like	domain
HATPase_c_3	PF13589.6	gi|76803380|ref|YP_327649.1|	-	0.094	12.5	0.0	0.23	11.3	0.0	1.6	1	0	0	1	1	1	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HTH_10	PF04967.12	gi|76803381|ref|YP_327650.1|	-	3.3e-15	55.6	0.0	5.6e-15	54.9	0.0	1.4	1	0	0	1	1	1	1	HTH	DNA	binding	domain
Sigma70_r4	PF04545.16	gi|76803381|ref|YP_327650.1|	-	0.00024	20.6	0.1	0.00064	19.2	0.1	1.8	1	0	0	1	1	1	1	Sigma-70,	region	4
Syntaxin-6_N	PF09177.11	gi|76803381|ref|YP_327650.1|	-	0.014	16.0	1.3	0.96	10.0	0.2	2.4	2	1	0	2	2	2	0	Syntaxin	6,	N-terminal
BAT	PF15915.5	gi|76803381|ref|YP_327650.1|	-	0.03	14.2	0.4	0.15	11.9	0.0	2.0	1	1	0	2	2	2	0	GAF	and	HTH_10	associated	domain
CoA_trans	PF01144.23	gi|76803382|ref|YP_327651.1|	-	5.3e-27	94.6	0.1	6.2e-27	94.4	0.1	1.1	1	0	0	1	1	1	1	Coenzyme	A	transferase
CoA_trans	PF01144.23	gi|76803383|ref|YP_327652.1|	-	1.4e-35	122.6	0.0	1.8e-35	122.3	0.0	1.1	1	0	0	1	1	1	1	Coenzyme	A	transferase
Mal_decarbox_Al	PF16957.5	gi|76803383|ref|YP_327652.1|	-	0.16	10.3	0.1	0.25	9.6	0.1	1.2	1	0	0	1	1	1	0	Malonate	decarboxylase,	alpha	subunit,	transporter
SSF	PF00474.17	gi|76803384|ref|YP_327653.1|	-	4.6e-34	118.0	36.0	6.8e-34	117.4	36.0	1.2	1	0	0	1	1	1	1	Sodium:solute	symporter	family
60KD_IMP	PF02096.20	gi|76803384|ref|YP_327653.1|	-	0.67	9.8	2.8	1.6	8.6	0.0	2.8	3	1	0	3	3	3	0	60Kd	inner	membrane	protein
adh_short	PF00106.25	gi|76803386|ref|YP_327655.1|	-	1.4e-36	125.8	1.5	1.8e-36	125.4	1.5	1.1	1	0	0	1	1	1	1	short	chain	dehydrogenase
adh_short_C2	PF13561.6	gi|76803386|ref|YP_327655.1|	-	2.1e-36	125.7	0.9	3e-36	125.2	0.9	1.2	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
KR	PF08659.10	gi|76803386|ref|YP_327655.1|	-	2.6e-08	34.0	0.2	3.6e-08	33.5	0.2	1.3	1	0	0	1	1	1	1	KR	domain
Epimerase	PF01370.21	gi|76803386|ref|YP_327655.1|	-	9.5e-05	22.0	0.2	0.00023	20.7	0.1	1.6	2	0	0	2	2	2	1	NAD	dependent	epimerase/dehydratase	family
Polysacc_synt_2	PF02719.15	gi|76803386|ref|YP_327655.1|	-	0.0002	20.6	0.0	0.00029	20.1	0.0	1.2	1	0	0	1	1	1	1	Polysaccharide	biosynthesis	protein
GDP_Man_Dehyd	PF16363.5	gi|76803386|ref|YP_327655.1|	-	0.0031	17.0	0.0	0.0052	16.2	0.0	1.3	1	0	0	1	1	1	1	GDP-mannose	4,6	dehydratase
Mrr_cat	PF04471.12	gi|76803387|ref|YP_327656.1|	-	1.5e-23	83.0	0.1	2.9e-23	82.1	0.1	1.5	1	0	0	1	1	1	1	Restriction	endonuclease
TOM6p	PF15184.6	gi|76803388|ref|YP_327657.1|	-	0.067	13.0	0.0	0.12	12.2	0.0	1.3	1	0	0	1	1	1	0	Mitochondrial	import	receptor	subunit	TOM6	homolog
NTP_transf_2	PF01909.23	gi|76803389|ref|YP_327658.1|	-	2.9e-09	37.1	0.2	4.9e-09	36.4	0.2	1.5	1	0	0	1	1	1	1	Nucleotidyltransferase	domain
HTH_11	PF08279.12	gi|76803389|ref|YP_327658.1|	-	1.4e-08	34.6	1.0	2e-08	34.1	0.0	1.7	2	0	0	2	2	2	1	HTH	domain
Polbeta	PF18765.1	gi|76803389|ref|YP_327658.1|	-	6.8e-08	32.5	0.1	2.4e-07	30.7	0.1	1.9	1	1	0	1	1	1	1	Polymerase	beta,	Nucleotidyltransferase
HTH_IclR	PF09339.10	gi|76803389|ref|YP_327658.1|	-	0.00044	20.0	0.0	0.001	18.8	0.0	1.6	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_29	PF13551.6	gi|76803389|ref|YP_327658.1|	-	0.00088	19.3	0.0	0.002	18.1	0.0	1.6	1	0	0	1	1	1	1	Winged	helix-turn	helix
MarR_2	PF12802.7	gi|76803389|ref|YP_327658.1|	-	0.0054	16.6	0.0	0.015	15.2	0.0	1.7	1	0	0	1	1	1	1	MarR	family
HTH_23	PF13384.6	gi|76803389|ref|YP_327658.1|	-	0.007	16.1	0.0	0.016	15.0	0.0	1.5	1	0	0	1	1	1	1	Homeodomain-like	domain
GntR	PF00392.21	gi|76803389|ref|YP_327658.1|	-	0.01	15.5	0.0	0.021	14.5	0.0	1.5	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
HTH_Crp_2	PF13545.6	gi|76803389|ref|YP_327658.1|	-	0.04	13.9	0.0	0.093	12.7	0.0	1.6	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
Adenyl_cycl_N	PF12633.7	gi|76803389|ref|YP_327658.1|	-	0.04	13.8	0.0	0.057	13.3	0.0	1.2	1	0	0	1	1	1	0	Adenylate	cyclase	NT	domain
TrmB	PF01978.19	gi|76803389|ref|YP_327658.1|	-	0.041	13.8	0.0	0.1	12.5	0.0	1.7	2	0	0	2	2	2	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_24	PF13412.6	gi|76803389|ref|YP_327658.1|	-	0.057	13.0	0.0	0.12	12.0	0.0	1.6	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
DUF294	PF03445.13	gi|76803389|ref|YP_327658.1|	-	0.068	13.0	0.1	0.11	12.3	0.1	1.4	1	0	0	1	1	1	0	Putative	nucleotidyltransferase	DUF294
HTH_CodY	PF08222.11	gi|76803389|ref|YP_327658.1|	-	0.098	12.2	0.1	0.43	10.2	0.0	2.0	2	0	0	2	2	2	0	CodY	helix-turn-helix	domain
HTH_20	PF12840.7	gi|76803392|ref|YP_327661.1|	-	9.1e-12	44.9	2.4	1.7e-11	44.0	0.4	2.1	1	1	1	2	2	2	1	Helix-turn-helix	domain
HTH_5	PF01022.20	gi|76803392|ref|YP_327661.1|	-	7.6e-08	32.1	2.8	8.7e-08	31.9	0.1	2.3	2	1	1	3	3	3	1	Bacterial	regulatory	protein,	arsR	family
DUF4423	PF14394.6	gi|76803392|ref|YP_327661.1|	-	0.002	17.9	0.1	0.0056	16.4	0.0	1.7	1	1	1	2	2	2	1	Domain	of	unknown	function	(DUF4423)
HTH_27	PF13463.6	gi|76803392|ref|YP_327661.1|	-	0.0027	18.2	0.3	0.017	15.6	0.1	2.1	1	1	1	2	2	2	1	Winged	helix	DNA-binding	domain
TrmB	PF01978.19	gi|76803392|ref|YP_327661.1|	-	0.016	15.1	0.0	0.04	13.8	0.0	1.7	1	1	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
GntR	PF00392.21	gi|76803392|ref|YP_327661.1|	-	0.017	14.8	0.5	0.34	10.6	0.0	2.3	1	1	1	2	2	2	0	Bacterial	regulatory	proteins,	gntR	family
Nnf1	PF03980.14	gi|76803392|ref|YP_327661.1|	-	0.042	14.2	1.7	0.11	12.9	1.7	1.8	1	1	0	1	1	1	0	Nnf1
HTH_34	PF13601.6	gi|76803392|ref|YP_327661.1|	-	0.054	13.7	0.0	0.097	12.9	0.0	1.4	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
MarR_2	PF12802.7	gi|76803392|ref|YP_327661.1|	-	0.061	13.2	0.1	0.16	11.8	0.1	1.8	1	1	0	1	1	1	0	MarR	family
Str_synth	PF03088.16	gi|76803392|ref|YP_327661.1|	-	0.14	12.3	0.0	0.35	11.0	0.0	1.6	2	0	0	2	2	2	0	Strictosidine	synthase
SBF	PF01758.16	gi|76803393|ref|YP_327662.1|	-	1.1e-51	175.4	9.9	1.1e-51	175.4	9.9	2.1	2	0	0	2	2	2	1	Sodium	Bile	acid	symporter	family
KASH	PF10541.9	gi|76803393|ref|YP_327662.1|	-	2.3	8.5	0.0	2.3	8.5	0.0	3.3	3	1	0	3	3	3	0	Nuclear	envelope	localisation	domain
DUF543	PF04418.12	gi|76803393|ref|YP_327662.1|	-	4.8	7.2	7.3	8	6.5	0.2	3.3	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF543)
Usp	PF00582.26	gi|76803394|ref|YP_327663.1|	-	1.7e-57	193.9	12.7	1.3e-28	100.3	2.7	2.0	2	0	0	2	2	2	2	Universal	stress	protein	family
AP_endonuc_2	PF01261.24	gi|76803394|ref|YP_327663.1|	-	0.014	14.8	1.5	0.98	8.8	0.0	2.9	2	1	1	3	3	3	0	Xylose	isomerase-like	TIM	barrel
Terminase_GpA	PF05876.12	gi|76803394|ref|YP_327663.1|	-	0.067	11.7	0.1	0.098	11.2	0.1	1.1	1	0	0	1	1	1	0	Phage	terminase	large	subunit	(GpA)
MAAL_C	PF07476.11	gi|76803394|ref|YP_327663.1|	-	0.078	12.1	0.1	0.48	9.5	0.0	2.1	2	0	0	2	2	2	0	Methylaspartate	ammonia-lyase	C-terminus
PAS_9	PF13426.7	gi|76803395|ref|YP_327664.1|	-	4e-50	168.4	0.7	2e-22	79.4	0.0	3.3	3	0	0	3	3	3	3	PAS	domain
PAS	PF00989.25	gi|76803395|ref|YP_327664.1|	-	2.7e-37	127.2	0.6	3.2e-16	59.3	0.1	3.4	3	0	0	3	3	3	3	PAS	fold
PAS_3	PF08447.12	gi|76803395|ref|YP_327664.1|	-	4.3e-24	84.6	0.1	4.1e-11	43.0	0.0	3.5	3	0	0	3	3	3	3	PAS	fold
PAS_4	PF08448.10	gi|76803395|ref|YP_327664.1|	-	1e-23	83.7	2.8	7.6e-09	35.8	0.1	3.4	3	0	0	3	3	3	3	PAS	fold
PAS_8	PF13188.7	gi|76803395|ref|YP_327664.1|	-	8.5e-20	70.3	0.3	9.2e-06	25.6	0.0	3.9	4	0	0	4	4	4	3	PAS	domain
HATPase_c	PF02518.26	gi|76803395|ref|YP_327664.1|	-	4.5e-10	40.0	0.0	1.1e-09	38.7	0.0	1.7	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c_2	PF13581.6	gi|76803395|ref|YP_327664.1|	-	5.6e-08	32.8	0.1	1.1e-07	31.8	0.1	1.5	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
DDE_Tnp_IS1595	PF12762.7	gi|76803397|ref|YP_327666.1|	-	1.5e-23	83.5	0.0	2.2e-23	82.9	0.0	1.3	1	0	0	1	1	1	1	ISXO2-like	transposase	domain
Zn_Tnp_IS1595	PF12760.7	gi|76803397|ref|YP_327666.1|	-	5.4e-10	39.1	4.8	1.1e-09	38.0	4.8	1.6	1	0	0	1	1	1	1	Transposase	zinc-ribbon	domain
Zn_Tnp_IS1	PF03811.13	gi|76803397|ref|YP_327666.1|	-	5.3e-05	22.8	7.0	0.00011	21.9	7.0	1.5	1	0	0	1	1	1	1	InsA	N-terminal	domain
DUF2089	PF09862.9	gi|76803397|ref|YP_327666.1|	-	0.0072	16.4	0.0	0.012	15.6	0.0	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF2089)
Auxin_inducible	PF02519.14	gi|76803397|ref|YP_327666.1|	-	0.072	13.3	0.0	0.13	12.5	0.0	1.4	1	0	0	1	1	1	0	Auxin	responsive	protein
CoiA	PF06054.11	gi|76803397|ref|YP_327666.1|	-	0.17	11.0	0.1	0.27	10.3	0.1	1.3	1	0	0	1	1	1	0	Competence	protein	CoiA-like	family
Lar_restr_allev	PF14354.6	gi|76803397|ref|YP_327666.1|	-	0.21	12.0	1.5	0.47	10.9	1.5	1.5	1	0	0	1	1	1	0	Restriction	alleviation	protein	Lar
zf-Dof	PF02701.15	gi|76803397|ref|YP_327666.1|	-	0.26	11.5	3.7	0.51	10.5	3.7	1.5	1	0	0	1	1	1	0	Dof	domain,	zinc	finger
zf-ISL3	PF14690.6	gi|76803397|ref|YP_327666.1|	-	0.28	11.9	8.1	0.52	11.0	0.9	2.7	1	1	1	2	2	2	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
UCR_UQCRX_QCR9	PF05365.12	gi|76803399|ref|YP_327668.1|	-	0.13	12.2	0.6	19	5.3	0.0	3.0	3	0	0	3	3	3	0	Ubiquinol-cytochrome	C	reductase,	UQCRX/QCR9	like
LPAM_2	PF13627.6	gi|76803399|ref|YP_327668.1|	-	0.97	9.4	3.1	1.5	8.8	3.1	1.3	1	0	0	1	1	1	0	Prokaryotic	lipoprotein-attachment	site
UPF0061	PF02696.14	gi|76803400|ref|YP_327669.1|	-	6.7e-110	368.0	0.4	7.7e-108	361.2	0.4	2.0	1	1	0	1	1	1	1	Uncharacterized	ACR,	YdiU/UPF0061	family
DoxX	PF07681.12	gi|76803401|ref|YP_327670.1|	-	2.5e-09	37.6	8.4	2.5e-09	37.6	8.4	1.7	2	0	0	2	2	2	1	DoxX
DoxD	PF04173.13	gi|76803401|ref|YP_327670.1|	-	4.4e-05	23.4	9.0	9.4e-05	22.4	9.0	1.5	1	1	0	1	1	1	1	TQO	small	subunit	DoxD
PAS_9	PF13426.7	gi|76803403|ref|YP_327672.1|	-	7e-33	113.0	0.0	1e-16	61.0	0.0	3.4	3	0	0	3	3	3	3	PAS	domain
PAS	PF00989.25	gi|76803403|ref|YP_327672.1|	-	1.3e-30	105.6	0.5	1.3e-13	51.0	0.0	3.4	3	0	0	3	3	3	3	PAS	fold
PAS_4	PF08448.10	gi|76803403|ref|YP_327672.1|	-	6.6e-27	93.9	4.0	4.5e-09	36.5	0.0	3.4	3	0	0	3	3	3	3	PAS	fold
PAS_8	PF13188.7	gi|76803403|ref|YP_327672.1|	-	6.2e-21	74.0	0.7	5.5e-07	29.5	0.0	3.6	3	0	0	3	3	3	3	PAS	domain
HATPase_c	PF02518.26	gi|76803403|ref|YP_327672.1|	-	2.3e-14	53.8	0.0	5.2e-14	52.7	0.0	1.6	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_3	PF08447.12	gi|76803403|ref|YP_327672.1|	-	1.3e-09	38.2	0.5	3.5e-07	30.4	0.1	2.8	2	0	0	2	2	2	1	PAS	fold
PAS_7	PF12860.7	gi|76803403|ref|YP_327672.1|	-	5e-06	26.7	0.3	0.013	15.7	0.0	4.3	4	2	0	4	4	4	1	PAS	fold
HATPase_c_2	PF13581.6	gi|76803403|ref|YP_327672.1|	-	6.5e-05	22.9	0.1	0.00013	21.9	0.1	1.6	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
HisKA	PF00512.25	gi|76803403|ref|YP_327672.1|	-	0.00033	20.6	2.9	0.00033	20.6	2.9	2.1	2	0	0	2	2	2	1	His	Kinase	A	(phospho-acceptor)	domain
PAS_12	PF18095.1	gi|76803403|ref|YP_327672.1|	-	0.11	12.1	0.0	2.7	7.6	0.0	2.4	2	0	0	2	2	2	0	UPF0242	C-terminal	PAS-like	domain
MarR_2	PF12802.7	gi|76803405|ref|YP_327674.1|	-	1.4e-08	34.5	0.0	1.9e-08	34.1	0.0	1.2	1	0	0	1	1	1	1	MarR	family
HTH_IclR	PF09339.10	gi|76803405|ref|YP_327674.1|	-	2.4e-05	24.1	0.1	3.5e-05	23.5	0.1	1.3	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
TrmB	PF01978.19	gi|76803405|ref|YP_327674.1|	-	7.6e-05	22.5	0.0	0.00011	22.0	0.0	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_24	PF13412.6	gi|76803405|ref|YP_327674.1|	-	0.00014	21.3	0.0	0.00034	20.1	0.0	1.7	1	1	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_20	PF12840.7	gi|76803405|ref|YP_327674.1|	-	0.00074	19.5	0.0	0.00098	19.1	0.0	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_5	PF01022.20	gi|76803405|ref|YP_327674.1|	-	0.0017	18.2	0.0	0.0025	17.7	0.0	1.2	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
Fe_dep_repress	PF01325.19	gi|76803405|ref|YP_327674.1|	-	0.0026	17.9	0.0	0.004	17.3	0.0	1.3	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_Crp_2	PF13545.6	gi|76803405|ref|YP_327674.1|	-	0.0052	16.7	0.0	0.0093	15.9	0.0	1.3	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
DprA_WH	PF17782.1	gi|76803405|ref|YP_327674.1|	-	0.0056	16.8	0.0	0.011	15.9	0.0	1.5	1	0	0	1	1	1	1	DprA	winged	helix	domain
HTH_11	PF08279.12	gi|76803405|ref|YP_327674.1|	-	0.0056	16.6	0.0	0.0077	16.2	0.0	1.2	1	0	0	1	1	1	1	HTH	domain
MarR	PF01047.22	gi|76803405|ref|YP_327674.1|	-	0.0089	15.9	0.0	0.012	15.5	0.0	1.2	1	0	0	1	1	1	1	MarR	family
GntR	PF00392.21	gi|76803405|ref|YP_327674.1|	-	0.011	15.3	0.0	0.017	14.7	0.0	1.2	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
PadR	PF03551.14	gi|76803405|ref|YP_327674.1|	-	0.017	15.1	0.0	0.024	14.6	0.0	1.2	1	0	0	1	1	1	0	Transcriptional	regulator	PadR-like	family
TFIIE_alpha	PF02002.17	gi|76803405|ref|YP_327674.1|	-	0.13	12.1	0.0	0.17	11.7	0.0	1.2	1	0	0	1	1	1	0	TFIIE	alpha	subunit
Rrf2	PF02082.20	gi|76803405|ref|YP_327674.1|	-	0.18	12.1	0.0	0.26	11.7	0.0	1.2	1	0	0	1	1	1	0	Transcriptional	regulator
PemK_toxin	PF02452.17	gi|76803406|ref|YP_327675.1|	-	5.7e-05	23.5	0.0	6.4e-05	23.3	0.0	1.1	1	0	0	1	1	1	1	PemK-like,	MazF-like	toxin	of	type	II	toxin-antitoxin	system
LMWPc	PF01451.21	gi|76803407|ref|YP_327676.1|	-	2e-22	80.1	0.6	3.6e-22	79.3	0.6	1.4	1	1	0	1	1	1	1	Low	molecular	weight	phosphotyrosine	protein	phosphatase
PhoU	PF01895.19	gi|76803408|ref|YP_327677.1|	-	2.1e-14	53.7	8.2	8.5e-14	51.8	2.9	2.7	2	1	0	2	2	2	1	PhoU	domain
MazE_antitoxin	PF04014.18	gi|76803408|ref|YP_327677.1|	-	0.00024	21.0	0.0	0.00056	19.8	0.0	1.6	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
HAMP	PF00672.25	gi|76803408|ref|YP_327677.1|	-	0.028	14.8	0.5	0.028	14.8	0.5	2.4	2	0	0	2	2	2	0	HAMP	domain
PHP	PF02811.19	gi|76803408|ref|YP_327677.1|	-	0.085	13.1	0.0	0.14	12.5	0.0	1.3	1	0	0	1	1	1	0	PHP	domain
PhoU	PF01895.19	gi|76803409|ref|YP_327678.1|	-	4.6e-37	126.4	8.6	9.4e-19	67.7	0.1	2.1	2	0	0	2	2	2	2	PhoU	domain
ABC_tran	PF00005.27	gi|76803410|ref|YP_327679.1|	-	1.5e-31	109.7	0.0	3.2e-31	108.7	0.0	1.5	2	0	0	2	2	2	1	ABC	transporter
AAA_21	PF13304.6	gi|76803410|ref|YP_327679.1|	-	1.4e-11	44.7	0.0	3.7e-05	23.7	0.0	2.2	2	0	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|76803410|ref|YP_327679.1|	-	8.7e-09	35.1	0.1	2.6e-07	30.3	0.1	2.1	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_15	PF13175.6	gi|76803410|ref|YP_327679.1|	-	3.5e-08	33.5	0.0	3.8e-05	23.6	0.0	2.1	2	0	0	2	2	2	2	AAA	ATPase	domain
AAA_23	PF13476.6	gi|76803410|ref|YP_327679.1|	-	7.9e-05	23.2	0.0	0.00016	22.3	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
RsgA_GTPase	PF03193.16	gi|76803410|ref|YP_327679.1|	-	0.00014	21.8	0.0	0.00024	21.0	0.0	1.4	1	0	0	1	1	1	1	RsgA	GTPase
AAA_29	PF13555.6	gi|76803410|ref|YP_327679.1|	-	0.00018	21.2	0.0	0.00047	19.8	0.0	1.7	2	0	0	2	2	2	1	P-loop	containing	region	of	AAA	domain
AAA_16	PF13191.6	gi|76803410|ref|YP_327679.1|	-	0.00026	21.4	0.0	0.00047	20.6	0.0	1.4	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_22	PF13401.6	gi|76803410|ref|YP_327679.1|	-	0.00033	20.9	0.0	0.00079	19.7	0.0	1.6	1	1	0	1	1	1	1	AAA	domain
AAA_25	PF13481.6	gi|76803410|ref|YP_327679.1|	-	0.0092	15.6	0.0	0.034	13.7	0.0	1.8	2	0	0	2	2	2	1	AAA	domain
Rad17	PF03215.15	gi|76803410|ref|YP_327679.1|	-	0.0097	15.9	0.0	0.016	15.2	0.0	1.3	1	0	0	1	1	1	1	Rad17	P-loop	domain
AAA_33	PF13671.6	gi|76803410|ref|YP_327679.1|	-	0.014	15.6	0.0	0.026	14.7	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
DeoRC	PF00455.22	gi|76803410|ref|YP_327679.1|	-	0.036	14.0	0.0	0.053	13.5	0.0	1.3	1	0	0	1	1	1	0	DeoR	C	terminal	sensor	domain
AAA_18	PF13238.6	gi|76803410|ref|YP_327679.1|	-	0.036	14.6	0.0	0.087	13.4	0.0	1.6	2	0	0	2	2	1	0	AAA	domain
AAA_30	PF13604.6	gi|76803410|ref|YP_327679.1|	-	0.036	13.8	0.0	0.28	10.9	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
AAA_24	PF13479.6	gi|76803410|ref|YP_327679.1|	-	0.055	13.2	0.0	0.34	10.6	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
PRK	PF00485.18	gi|76803410|ref|YP_327679.1|	-	0.07	12.9	0.0	0.14	11.9	0.0	1.5	1	0	0	1	1	1	0	Phosphoribulokinase	/	Uridine	kinase	family
AAA	PF00004.29	gi|76803410|ref|YP_327679.1|	-	0.07	13.5	0.0	1	9.8	0.0	2.4	2	1	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
NB-ARC	PF00931.22	gi|76803410|ref|YP_327679.1|	-	0.071	12.3	0.0	0.089	12.0	0.0	1.3	1	0	0	1	1	1	0	NB-ARC	domain
RNA_helicase	PF00910.22	gi|76803410|ref|YP_327679.1|	-	0.089	13.2	0.0	0.44	11.0	0.0	2.0	2	0	0	2	2	2	0	RNA	helicase
AAA_19	PF13245.6	gi|76803410|ref|YP_327679.1|	-	0.1	12.9	0.0	1.4	9.3	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
IstB_IS21	PF01695.17	gi|76803410|ref|YP_327679.1|	-	0.15	11.8	0.0	2.7	7.7	0.0	2.1	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
NACHT	PF05729.12	gi|76803410|ref|YP_327679.1|	-	0.16	11.8	0.0	0.31	10.9	0.0	1.4	1	0	0	1	1	1	0	NACHT	domain
BPD_transp_1	PF00528.22	gi|76803411|ref|YP_327680.1|	-	8.4e-20	71.3	14.2	8.4e-20	71.3	14.2	2.1	1	1	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
BPD_transp_1	PF00528.22	gi|76803412|ref|YP_327681.1|	-	1.5e-16	60.7	14.5	1.5e-16	60.7	14.5	2.3	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
VirB8	PF04335.13	gi|76803412|ref|YP_327681.1|	-	0.093	12.6	0.1	1.3	8.8	0.0	2.2	2	0	0	2	2	2	0	VirB8	protein
Sigma_reg_N	PF13800.6	gi|76803412|ref|YP_327681.1|	-	0.19	12.0	0.9	20	5.5	0.0	3.0	3	0	0	3	3	3	0	Sigma	factor	regulator	N-terminal
PBP_like_2	PF12849.7	gi|76803413|ref|YP_327682.1|	-	1.1e-17	64.6	0.5	3.6e-17	62.9	0.5	1.7	1	1	0	1	1	1	1	PBP	superfamily	domain
PBP_like	PF12727.7	gi|76803413|ref|YP_327682.1|	-	3.7e-15	55.6	0.0	7.1e-15	54.6	0.0	1.5	1	1	0	1	1	1	1	PBP	superfamily	domain
Glyco_hydro_36	PF17167.4	gi|76803413|ref|YP_327682.1|	-	0.094	11.4	0.1	0.13	11.0	0.1	1.2	1	0	0	1	1	1	0	Glycosyl	hydrolase	36	superfamily,	catalytic	domain
UCR_Fe-S_N	PF10399.9	gi|76803413|ref|YP_327682.1|	-	0.1	12.0	1.0	0.19	11.1	1.0	1.4	1	0	0	1	1	1	0	Ubiquitinol-cytochrome	C	reductase	Fe-S	subunit	TAT	signal
TAT_signal	PF10518.9	gi|76803413|ref|YP_327682.1|	-	0.32	10.9	8.1	0.57	10.1	8.1	1.4	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
HTH_24	PF13412.6	gi|76803414|ref|YP_327683.1|	-	5.8e-12	45.0	0.3	1.3e-11	43.9	0.3	1.6	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
TrkA_C	PF02080.21	gi|76803414|ref|YP_327683.1|	-	1.9e-11	43.6	0.5	4.1e-11	42.5	0.1	1.8	2	0	0	2	2	2	1	TrkA-C	domain
HTH_AsnC-type	PF13404.6	gi|76803414|ref|YP_327683.1|	-	1.7e-10	40.5	0.6	3.5e-10	39.5	0.6	1.6	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_11	PF08279.12	gi|76803414|ref|YP_327683.1|	-	8.4e-08	32.1	0.3	2.6e-07	30.5	0.0	1.9	2	0	0	2	2	2	1	HTH	domain
MarR_2	PF12802.7	gi|76803414|ref|YP_327683.1|	-	2.2e-05	24.3	0.1	4.5e-05	23.3	0.1	1.6	1	0	0	1	1	1	1	MarR	family
HTH_20	PF12840.7	gi|76803414|ref|YP_327683.1|	-	9.8e-05	22.3	0.0	0.00018	21.5	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_DeoR	PF08220.12	gi|76803414|ref|YP_327683.1|	-	0.00028	20.6	0.0	0.00064	19.4	0.0	1.6	1	0	0	1	1	1	1	DeoR-like	helix-turn-helix	domain
HTH_5	PF01022.20	gi|76803414|ref|YP_327683.1|	-	0.00029	20.6	0.0	0.00048	19.9	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
Fe_dep_repress	PF01325.19	gi|76803414|ref|YP_327683.1|	-	0.00031	20.9	0.0	0.00054	20.1	0.0	1.3	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
MarR	PF01047.22	gi|76803414|ref|YP_327683.1|	-	0.0013	18.6	0.0	0.0026	17.7	0.0	1.4	1	0	0	1	1	1	1	MarR	family
HTH_Crp_2	PF13545.6	gi|76803414|ref|YP_327683.1|	-	0.0093	15.9	0.1	0.053	13.5	0.0	2.2	2	0	0	2	2	2	1	Crp-like	helix-turn-helix	domain
ThiS	PF02597.20	gi|76803414|ref|YP_327683.1|	-	0.01	16.5	0.2	0.047	14.3	0.1	2.1	2	0	0	2	2	2	0	ThiS	family
HTH_23	PF13384.6	gi|76803414|ref|YP_327683.1|	-	0.012	15.4	0.1	0.025	14.4	0.1	1.5	1	0	0	1	1	1	0	Homeodomain-like	domain
HTH_30	PF13556.6	gi|76803414|ref|YP_327683.1|	-	0.023	14.5	0.1	0.058	13.2	0.1	1.6	1	0	0	1	1	1	0	PucR	C-terminal	helix-turn-helix	domain
HTH_IclR	PF09339.10	gi|76803414|ref|YP_327683.1|	-	0.023	14.5	0.0	0.044	13.6	0.0	1.4	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
HTH_36	PF13730.6	gi|76803414|ref|YP_327683.1|	-	0.023	14.6	0.0	0.041	13.8	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
TrmB	PF01978.19	gi|76803414|ref|YP_327683.1|	-	0.04	13.8	0.0	0.071	13.0	0.0	1.4	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
Sigma70_r4_2	PF08281.12	gi|76803414|ref|YP_327683.1|	-	0.043	13.5	0.0	0.11	12.2	0.0	1.8	1	0	0	1	1	1	0	Sigma-70,	region	4
HTH_28	PF13518.6	gi|76803414|ref|YP_327683.1|	-	0.08	13.1	0.1	0.17	12.0	0.1	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
Sigma70_r4	PF04545.16	gi|76803414|ref|YP_327683.1|	-	0.083	12.4	0.3	0.3	10.6	0.1	2.0	2	0	0	2	2	2	0	Sigma-70,	region	4
HTH_50	PF18024.1	gi|76803414|ref|YP_327683.1|	-	0.083	12.5	0.0	0.19	11.4	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_38	PF13936.6	gi|76803414|ref|YP_327683.1|	-	0.2	11.4	0.3	0.2	11.4	0.3	2.1	3	0	0	3	3	1	0	Helix-turn-helix	domain
Usp	PF00582.26	gi|76803415|ref|YP_327684.1|	-	6.1e-10	39.8	0.3	8.2e-10	39.3	0.3	1.1	1	0	0	1	1	1	1	Universal	stress	protein	family
TrkA_N	PF02254.18	gi|76803416|ref|YP_327685.1|	-	1.1e-25	90.1	2.4	1.1e-25	90.1	2.4	1.4	2	0	0	2	2	1	1	TrkA-N	domain
TrkA_C	PF02080.21	gi|76803416|ref|YP_327685.1|	-	3.2e-12	46.1	0.2	7.9e-12	44.8	0.2	1.7	1	0	0	1	1	1	1	TrkA-C	domain
NAD_binding_7	PF13241.6	gi|76803416|ref|YP_327685.1|	-	1.6e-05	25.2	0.2	3.5e-05	24.2	0.2	1.5	1	0	0	1	1	1	1	Putative	NAD(P)-binding
F420_oxidored	PF03807.17	gi|76803416|ref|YP_327685.1|	-	0.00071	20.1	0.8	0.0032	18.0	0.3	2.2	2	1	0	2	2	2	1	NADP	oxidoreductase	coenzyme	F420-dependent
XdhC_C	PF13478.6	gi|76803416|ref|YP_327685.1|	-	0.0018	18.7	0.1	0.0029	18.1	0.1	1.4	1	0	0	1	1	1	1	XdhC	Rossmann	domain
NmrA	PF05368.13	gi|76803416|ref|YP_327685.1|	-	0.0041	16.7	0.4	0.0081	15.7	0.2	1.6	1	1	1	2	2	2	1	NmrA-like	family
Sacchrp_dh_NADP	PF03435.18	gi|76803416|ref|YP_327685.1|	-	0.005	17.1	0.4	0.0085	16.4	0.4	1.4	1	0	0	1	1	1	1	Saccharopine	dehydrogenase	NADP	binding	domain
AlaDh_PNT_C	PF01262.21	gi|76803416|ref|YP_327685.1|	-	0.0093	15.3	0.5	0.014	14.7	0.5	1.2	1	0	0	1	1	1	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
3HCDH_N	PF02737.18	gi|76803416|ref|YP_327685.1|	-	0.019	14.9	0.2	0.031	14.2	0.2	1.3	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
NAD_binding_10	PF13460.6	gi|76803416|ref|YP_327685.1|	-	0.034	14.1	0.8	0.19	11.6	0.7	2.1	1	1	1	2	2	2	0	NAD(P)H-binding
Pyr_redox	PF00070.27	gi|76803416|ref|YP_327685.1|	-	0.086	13.4	0.3	0.23	12.1	0.3	1.7	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
2-Hacid_dh_C	PF02826.19	gi|76803416|ref|YP_327685.1|	-	0.094	12.1	0.0	0.18	11.2	0.0	1.6	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
NAD_binding_2	PF03446.15	gi|76803416|ref|YP_327685.1|	-	0.11	12.7	0.4	0.22	11.7	0.1	1.7	2	0	0	2	2	2	0	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
TrkH	PF02386.16	gi|76803417|ref|YP_327686.1|	-	7e-68	229.3	8.5	1.3e-67	228.4	8.5	1.4	1	0	0	1	1	1	1	Cation	transport	protein
OrfB_Zn_ribbon	PF07282.11	gi|76803418|ref|YP_327687.1|	-	7.7e-17	61.0	0.1	1.6e-16	60.0	0.1	1.6	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
OrfB_IS605	PF01385.19	gi|76803418|ref|YP_327687.1|	-	3.1e-16	59.7	0.1	6.9e-16	58.6	0.1	1.6	1	0	0	1	1	1	1	Probable	transposase
HTH_OrfB_IS605	PF12323.8	gi|76803418|ref|YP_327687.1|	-	0.00011	21.6	0.1	0.00023	20.6	0.1	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
Rubredoxin_2	PF18073.1	gi|76803418|ref|YP_327687.1|	-	0.21	11.3	2.0	0.57	10.0	2.0	1.7	1	1	0	1	1	1	0	Rubredoxin	metal	binding	domain
BPD_transp_1	PF00528.22	gi|76803420|ref|YP_327689.1|	-	7e-12	45.5	14.9	3.3e-10	40.0	11.6	2.1	2	0	0	2	2	2	2	Binding-protein-dependent	transport	system	inner	membrane	component
Baculo_p74	PF04583.12	gi|76803420|ref|YP_327689.1|	-	0.2	11.1	0.6	1.4	8.4	0.1	2.1	2	0	0	2	2	2	0	Baculoviridae	p74	conserved	region
BPD_transp_1	PF00528.22	gi|76803421|ref|YP_327690.1|	-	3.4e-13	49.8	11.5	3.4e-13	49.8	11.5	2.0	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
ABC_tran	PF00005.27	gi|76803422|ref|YP_327691.1|	-	6.7e-39	133.5	0.0	8.8e-39	133.2	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|76803422|ref|YP_327691.1|	-	1.2e-08	35.2	0.0	0.0016	18.3	0.0	2.2	2	0	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_16	PF13191.6	gi|76803422|ref|YP_327691.1|	-	1.3e-05	25.7	0.3	7e-05	23.3	0.3	2.0	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_29	PF13555.6	gi|76803422|ref|YP_327691.1|	-	4.8e-05	23.0	0.0	8.2e-05	22.3	0.0	1.3	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
RsgA_GTPase	PF03193.16	gi|76803422|ref|YP_327691.1|	-	0.00036	20.5	0.1	0.0014	18.6	0.0	1.8	2	0	0	2	2	2	1	RsgA	GTPase
SbcCD_C	PF13558.6	gi|76803422|ref|YP_327691.1|	-	0.00068	19.8	0.3	0.21	11.9	0.2	3.1	2	1	0	2	2	2	1	Putative	exonuclease	SbcCD,	C	subunit
AAA_30	PF13604.6	gi|76803422|ref|YP_327691.1|	-	0.00073	19.3	0.2	0.0033	17.2	0.2	2.0	1	1	0	1	1	1	1	AAA	domain
MMR_HSR1	PF01926.23	gi|76803422|ref|YP_327691.1|	-	0.00081	19.5	0.0	0.072	13.2	0.0	2.3	2	0	0	2	2	2	1	50S	ribosome-binding	GTPase
DUF87	PF01935.17	gi|76803422|ref|YP_327691.1|	-	0.0012	19.0	0.1	0.067	13.3	0.0	2.1	2	0	0	2	2	2	1	Helicase	HerA,	central	domain
AAA_22	PF13401.6	gi|76803422|ref|YP_327691.1|	-	0.0015	18.9	0.1	0.013	15.7	0.1	2.1	1	1	0	1	1	1	1	AAA	domain
Mg_chelatase	PF01078.21	gi|76803422|ref|YP_327691.1|	-	0.0018	17.7	0.0	0.0028	17.1	0.0	1.2	1	0	0	1	1	1	1	Magnesium	chelatase,	subunit	ChlI
AAA_23	PF13476.6	gi|76803422|ref|YP_327691.1|	-	0.0025	18.4	0.0	0.0041	17.6	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
AAA_33	PF13671.6	gi|76803422|ref|YP_327691.1|	-	0.0044	17.2	0.0	0.022	14.9	0.0	1.9	1	1	0	1	1	1	1	AAA	domain
SMC_N	PF02463.19	gi|76803422|ref|YP_327691.1|	-	0.0077	15.7	0.0	1.3	8.4	0.0	2.1	2	0	0	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
AAA_28	PF13521.6	gi|76803422|ref|YP_327691.1|	-	0.019	15.2	0.0	0.032	14.5	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
Adeno_IVa2	PF02456.15	gi|76803422|ref|YP_327691.1|	-	0.057	12.2	0.0	0.076	11.8	0.0	1.1	1	0	0	1	1	1	0	Adenovirus	IVa2	protein
AAA_15	PF13175.6	gi|76803422|ref|YP_327691.1|	-	0.067	12.9	0.0	2.4	7.8	0.0	2.1	2	0	0	2	2	2	0	AAA	ATPase	domain
AAA_18	PF13238.6	gi|76803422|ref|YP_327691.1|	-	0.078	13.5	0.0	0.15	12.6	0.0	1.9	1	1	0	1	1	1	0	AAA	domain
YDG	PF18657.1	gi|76803422|ref|YP_327691.1|	-	0.082	13.1	0.1	2	8.6	0.0	2.2	2	0	0	2	2	2	0	YDG	domain
Rad17	PF03215.15	gi|76803422|ref|YP_327691.1|	-	0.09	12.7	0.0	1.2	9.1	0.0	2.0	2	0	0	2	2	2	0	Rad17	P-loop	domain
AAA_24	PF13479.6	gi|76803422|ref|YP_327691.1|	-	0.096	12.4	0.0	0.17	11.6	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_PrkA	PF08298.11	gi|76803422|ref|YP_327691.1|	-	0.12	11.3	0.0	0.15	10.9	0.0	1.2	1	0	0	1	1	1	0	PrkA	AAA	domain
PBP_dimer	PF03717.15	gi|76803422|ref|YP_327691.1|	-	0.14	12.5	0.0	0.22	11.9	0.0	1.2	1	0	0	1	1	1	0	Penicillin-binding	Protein	dimerisation	domain
NACHT	PF05729.12	gi|76803422|ref|YP_327691.1|	-	0.15	12.0	0.0	0.28	11.1	0.0	1.4	1	0	0	1	1	1	0	NACHT	domain
NTPase_1	PF03266.15	gi|76803422|ref|YP_327691.1|	-	0.19	11.6	0.3	1.7	8.5	0.1	2.1	2	0	0	2	2	2	0	NTPase
IstB_IS21	PF01695.17	gi|76803422|ref|YP_327691.1|	-	0.2	11.4	0.0	0.59	9.8	0.0	1.7	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
Phosphonate-bd	PF12974.7	gi|76803423|ref|YP_327692.1|	-	1.4e-46	159.1	0.0	1.7e-46	158.8	0.0	1.1	1	0	0	1	1	1	1	ABC	transporter,	phosphonate,	periplasmic	substrate-binding	protein
Peripla_BP_6	PF13458.6	gi|76803424|ref|YP_327693.1|	-	4.1e-74	250.3	0.3	4.1e-74	250.3	0.3	2.7	3	0	0	3	3	3	1	Periplasmic	binding	protein
Peripla_BP_5	PF13433.6	gi|76803424|ref|YP_327693.1|	-	5.9e-72	242.6	1.2	6.4e-72	242.5	0.1	1.6	2	0	0	2	2	2	1	Periplasmic	binding	protein	domain
MCPsignal	PF00015.21	gi|76803424|ref|YP_327693.1|	-	4.2e-34	117.8	62.3	1.4e-32	112.9	29.9	3.6	1	1	2	3	3	3	3	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
DUF948	PF06103.11	gi|76803424|ref|YP_327693.1|	-	4.5e-05	23.6	39.5	0.004	17.4	0.6	5.6	2	2	2	5	5	5	3	Bacterial	protein	of	unknown	function	(DUF948)
Laminin_II	PF06009.12	gi|76803424|ref|YP_327693.1|	-	0.0018	18.3	6.5	0.0018	18.3	6.5	4.9	3	2	2	5	5	4	2	Laminin	Domain	II
DUF1664	PF07889.12	gi|76803424|ref|YP_327693.1|	-	0.0056	16.7	29.3	0.026	14.6	2.8	5.0	3	2	3	6	6	6	3	Protein	of	unknown	function	(DUF1664)
PH_6	PF15406.6	gi|76803424|ref|YP_327693.1|	-	0.14	12.4	3.7	0.85	9.9	3.7	2.4	1	0	0	1	1	1	0	Pleckstrin	homology	domain
BLOC1_2	PF10046.9	gi|76803424|ref|YP_327693.1|	-	0.17	12.2	30.6	0.97	9.8	2.2	5.8	2	2	4	6	6	6	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
DUF2203	PF09969.9	gi|76803424|ref|YP_327693.1|	-	0.26	12.0	35.5	0.033	14.9	3.0	5.2	2	2	3	5	5	5	0	Uncharacterized	conserved	protein	(DUF2203)
Seryl_tRNA_N	PF02403.22	gi|76803424|ref|YP_327693.1|	-	0.72	10.1	34.9	0.52	10.6	0.4	6.0	3	1	5	8	8	8	0	Seryl-tRNA	synthetase	N-terminal	domain
DCB	PF16213.5	gi|76803424|ref|YP_327693.1|	-	1.1	8.9	8.3	8.5	6.0	0.2	3.4	3	0	0	3	3	3	0	Dimerisation	and	cyclophilin-binding	domain	of	Mon2
Fib_alpha	PF08702.10	gi|76803424|ref|YP_327693.1|	-	1.1	9.4	22.7	4.9	7.3	1.1	5.0	2	2	3	5	5	5	0	Fibrinogen	alpha/beta	chain	family
AIP3	PF03915.13	gi|76803424|ref|YP_327693.1|	-	1.3	8.0	25.8	0.4	9.7	10.9	2.5	1	1	1	2	2	2	0	Actin	interacting	protein	3
Spc7	PF08317.11	gi|76803424|ref|YP_327693.1|	-	5.3	5.8	39.3	0.27	10.1	12.7	3.7	2	2	1	3	3	3	0	Spc7	kinetochore	protein
Atg14	PF10186.9	gi|76803424|ref|YP_327693.1|	-	8.8	5.3	18.2	6.3	5.8	6.8	2.7	2	1	0	2	2	2	0	Vacuolar	sorting	38	and	autophagy-related	subunit	14
RHH_1	PF01402.21	gi|76803426|ref|YP_327695.1|	-	2.8e-05	23.9	0.1	8e-05	22.4	0.0	1.8	2	0	0	2	2	2	1	Ribbon-helix-helix	protein,	copG	family
DUF4351	PF14261.6	gi|76803427|ref|YP_327696.1|	-	0.054	13.6	0.2	0.086	12.9	0.1	1.4	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4351)
FlaC_arch	PF05377.11	gi|76803428|ref|YP_327697.1|	-	3.7e-06	27.2	4.8	0.016	15.6	1.9	2.9	2	1	1	3	3	3	2	Flagella	accessory	protein	C	(FlaC)
XhlA	PF10779.9	gi|76803428|ref|YP_327697.1|	-	0.00043	20.4	5.3	0.0084	16.3	2.7	2.5	2	1	0	2	2	2	1	Haemolysin	XhlA
MutS_III	PF05192.18	gi|76803428|ref|YP_327697.1|	-	0.00079	19.7	0.5	0.00092	19.5	0.5	1.0	1	0	0	1	1	1	1	MutS	domain	III
Snapin_Pallidin	PF14712.6	gi|76803428|ref|YP_327697.1|	-	0.00091	19.6	0.4	0.0031	17.9	0.2	1.8	1	1	0	1	1	1	1	Snapin/Pallidin
Spectrin	PF00435.21	gi|76803428|ref|YP_327697.1|	-	0.0021	18.5	1.1	1.1	9.8	0.6	2.0	1	1	1	2	2	2	2	Spectrin	repeat
Prefoldin_2	PF01920.20	gi|76803428|ref|YP_327697.1|	-	0.0022	17.9	4.2	0.75	9.8	2.2	2.7	2	1	0	2	2	2	1	Prefoldin	subunit
TolA_bind_tri	PF16331.5	gi|76803428|ref|YP_327697.1|	-	0.0028	17.7	3.3	0.16	12.1	1.4	2.1	2	0	0	2	2	2	1	TolA	binding	protein	trimerisation
YabA	PF06156.13	gi|76803428|ref|YP_327697.1|	-	0.0038	17.8	1.9	0.27	11.9	0.5	2.0	1	1	1	2	2	2	1	Initiation	control	protein	YabA
TMF_TATA_bd	PF12325.8	gi|76803428|ref|YP_327697.1|	-	0.006	16.8	2.7	1.8	8.8	0.1	2.3	1	1	1	2	2	2	2	TATA	element	modulatory	factor	1	TATA	binding
MerR-DNA-bind	PF09278.11	gi|76803428|ref|YP_327697.1|	-	0.0065	17.0	1.3	5.9	7.5	0.1	3.0	2	1	1	3	3	3	0	MerR,	DNA	binding
Csm1_N	PF18504.1	gi|76803428|ref|YP_327697.1|	-	0.0089	16.3	4.2	0.078	13.3	2.1	2.1	1	1	1	2	2	2	1	Csm1	N-terminal	domain
bZIP_1	PF00170.21	gi|76803428|ref|YP_327697.1|	-	0.014	15.5	2.6	1.7	8.8	0.3	2.9	2	1	1	3	3	3	0	bZIP	transcription	factor
EzrA	PF06160.12	gi|76803428|ref|YP_327697.1|	-	0.023	12.9	1.7	0.033	12.4	1.7	1.3	1	1	0	1	1	1	0	Septation	ring	formation	regulator,	EzrA
HMMR_N	PF15905.5	gi|76803428|ref|YP_327697.1|	-	0.023	14.2	0.9	0.028	13.9	0.9	1.1	1	0	0	1	1	1	0	Hyaluronan	mediated	motility	receptor	N-terminal
Fmp27_WPPW	PF10359.9	gi|76803428|ref|YP_327697.1|	-	0.028	13.3	1.3	0.059	12.2	1.3	1.6	1	1	0	1	1	1	0	RNA	pol	II	promoter	Fmp27	protein	domain
ABC_tran_CTD	PF16326.5	gi|76803428|ref|YP_327697.1|	-	0.029	14.6	4.7	0.58	10.4	2.3	2.5	2	1	0	2	2	2	0	ABC	transporter	C-terminal	domain
KELK	PF15796.5	gi|76803428|ref|YP_327697.1|	-	0.029	14.8	2.1	0.042	14.3	1.0	2.0	1	1	1	2	2	2	0	KELK-motif	containing	domain	of	MRCK	Ser/Thr	protein	kinase
Apolipoprotein	PF01442.18	gi|76803428|ref|YP_327697.1|	-	0.037	13.9	3.7	0.13	12.1	3.7	1.8	1	1	0	1	1	1	0	Apolipoprotein	A1/A4/E	domain
DUF2312	PF10073.9	gi|76803428|ref|YP_327697.1|	-	0.042	13.5	5.0	0.45	10.2	0.7	2.8	1	1	2	3	3	3	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2312)
Baculo_PEP_C	PF04513.12	gi|76803428|ref|YP_327697.1|	-	0.044	13.8	0.3	0.12	12.4	0.3	1.7	1	1	0	1	1	1	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
MscS_porin	PF12795.7	gi|76803428|ref|YP_327697.1|	-	0.044	13.3	0.7	0.16	11.5	0.4	1.8	2	0	0	2	2	2	0	Mechanosensitive	ion	channel	porin	domain
AAA_18	PF13238.6	gi|76803428|ref|YP_327697.1|	-	0.045	14.3	0.3	0.067	13.7	0.3	1.4	1	1	0	1	1	1	0	AAA	domain
CorA	PF01544.18	gi|76803428|ref|YP_327697.1|	-	0.045	13.1	2.1	0.063	12.6	2.1	1.2	1	1	0	1	1	1	0	CorA-like	Mg2+	transporter	protein
DUF2730	PF10805.8	gi|76803428|ref|YP_327697.1|	-	0.052	13.7	0.7	0.89	9.7	0.3	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2730)
DUF4600	PF15372.6	gi|76803428|ref|YP_327697.1|	-	0.055	13.9	1.1	0.28	11.6	0.4	1.9	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4600)
Prefoldin	PF02996.17	gi|76803428|ref|YP_327697.1|	-	0.07	13.0	3.5	3.8	7.5	0.3	2.8	1	1	1	3	3	3	0	Prefoldin	subunit
DUF2205	PF10224.9	gi|76803428|ref|YP_327697.1|	-	0.091	12.8	3.5	36	4.4	0.1	3.1	1	1	2	3	3	3	0	Short	coiled-coil	protein
PhoU	PF01895.19	gi|76803428|ref|YP_327697.1|	-	0.11	13.0	1.9	0.22	12.0	1.7	1.6	1	1	0	1	1	1	0	PhoU	domain
JMY	PF15871.5	gi|76803428|ref|YP_327697.1|	-	0.12	11.6	1.9	0.15	11.3	1.9	1.1	1	0	0	1	1	1	0	Junction-mediating	and	-regulatory	protein
PI3K_P85_iSH2	PF16454.5	gi|76803428|ref|YP_327697.1|	-	0.15	11.7	2.4	3.1	7.4	1.0	2.7	1	1	2	3	3	3	0	Phosphatidylinositol	3-kinase	regulatory	subunit	P85	inter-SH2	domain
HalX	PF08663.10	gi|76803428|ref|YP_327697.1|	-	0.16	12.3	11.3	2	8.8	0.1	3.1	2	1	1	3	3	3	0	HalX	domain
DUF1515	PF07439.11	gi|76803428|ref|YP_327697.1|	-	0.17	11.9	2.0	0.99	9.5	1.2	2.2	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1515)
DUF1664	PF07889.12	gi|76803428|ref|YP_327697.1|	-	0.2	11.7	0.9	0.37	10.8	0.9	1.5	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1664)
DUF1192	PF06698.11	gi|76803428|ref|YP_327697.1|	-	0.28	11.3	5.2	3.6	7.7	2.2	2.5	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF1192)
DUF241	PF03087.14	gi|76803428|ref|YP_327697.1|	-	0.3	10.9	3.1	1.8	8.4	3.1	1.9	1	1	0	1	1	1	0	Arabidopsis	protein	of	unknown	function
SlyX	PF04102.12	gi|76803428|ref|YP_327697.1|	-	0.57	10.8	4.0	22	5.7	0.1	2.8	2	1	0	2	2	2	0	SlyX
PLAC9	PF15205.6	gi|76803428|ref|YP_327697.1|	-	0.63	10.5	2.7	4.6	7.7	2.7	2.3	1	1	0	1	1	1	0	Placenta-specific	protein	9
OrfB_IS605	PF01385.19	gi|76803429|ref|YP_327698.1|	-	1.2e-22	80.4	0.2	1.2e-22	80.4	0.2	1.7	2	0	0	2	2	2	1	Probable	transposase
OrfB_Zn_ribbon	PF07282.11	gi|76803429|ref|YP_327698.1|	-	3.4e-22	78.1	0.1	8.3e-22	76.9	0.1	1.7	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
PBECR5	PF18814.1	gi|76803429|ref|YP_327698.1|	-	0.032	14.2	0.6	0.16	11.9	0.0	2.0	2	0	0	2	2	2	0	phage-Barnase-EndoU-ColicinE5/D-RelE	like	nuclease5
CHD5	PF04420.14	gi|76803429|ref|YP_327698.1|	-	0.061	13.2	2.0	0.13	12.1	2.0	1.5	1	0	0	1	1	1	0	CHD5-like	protein
HypA	PF01155.19	gi|76803429|ref|YP_327698.1|	-	0.16	12.0	0.1	0.29	11.2	0.1	1.5	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
DZR	PF12773.7	gi|76803429|ref|YP_327698.1|	-	0.21	11.6	1.0	0.4	10.7	1.0	1.5	1	0	0	1	1	1	0	Double	zinc	ribbon
Zn-ribbon_8	PF09723.10	gi|76803429|ref|YP_327698.1|	-	0.51	10.5	1.8	1.5	9.0	1.8	1.8	1	0	0	1	1	1	0	Zinc	ribbon	domain
RuvC_1	PF18516.1	gi|76803429|ref|YP_327698.1|	-	0.69	9.0	5.7	1.7	7.8	3.3	2.4	2	1	0	2	2	2	0	RuvC	nuclease	domain
Peptidase_S49_N	PF08496.10	gi|76803429|ref|YP_327698.1|	-	1.7	8.7	4.0	3.4	7.7	4.0	1.6	1	1	0	1	1	1	0	Peptidase	family	S49	N-terminal
Crl	PF07417.12	gi|76803429|ref|YP_327698.1|	-	2.2	8.3	6.8	6.4	6.8	1.3	2.3	2	0	0	2	2	2	0	Sigma	factor-binding	transcriptional	regulator	Crl
Aldo_ket_red	PF00248.21	gi|76803430|ref|YP_327699.1|	-	1.3e-19	70.5	0.0	1.5e-19	70.3	0.0	1.0	1	0	0	1	1	1	1	Aldo/keto	reductase	family
DUF4211	PF13926.6	gi|76803432|ref|YP_327701.1|	-	0.0059	16.7	0.0	0.0064	16.5	0.0	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4211)
OrfB_Zn_ribbon	PF07282.11	gi|76803433|ref|YP_327702.1|	-	7.2e-19	67.5	0.1	1.7e-18	66.3	0.1	1.6	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
OrfB_IS605	PF01385.19	gi|76803433|ref|YP_327702.1|	-	0.00041	20.6	1.7	0.0013	19.0	1.7	1.8	1	1	0	1	1	1	1	Probable	transposase
DZR	PF12773.7	gi|76803433|ref|YP_327702.1|	-	0.0035	17.3	1.3	0.007	16.4	1.3	1.4	1	0	0	1	1	1	1	Double	zinc	ribbon
Lar_restr_allev	PF14354.6	gi|76803433|ref|YP_327702.1|	-	0.0062	16.9	1.5	0.015	15.7	1.5	1.7	1	0	0	1	1	1	1	Restriction	alleviation	protein	Lar
zinc_ribbon_2	PF13240.6	gi|76803433|ref|YP_327702.1|	-	0.013	15.2	6.5	0.6	9.9	0.6	2.5	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-NADH-PPase	PF09297.11	gi|76803433|ref|YP_327702.1|	-	0.013	15.1	7.3	0.077	12.7	1.0	2.6	2	0	0	2	2	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
N36	PF11438.8	gi|76803433|ref|YP_327702.1|	-	0.02	14.7	2.5	0.049	13.4	2.5	1.6	1	0	0	1	1	1	0	36-mer	N-terminal	peptide	of	the	N	protein	(N36)
zf_CopZ	PF18423.1	gi|76803433|ref|YP_327702.1|	-	0.042	13.8	0.5	3.8	7.5	0.1	2.4	2	0	0	2	2	2	0	Zinc	binding	domain
EzrA	PF06160.12	gi|76803433|ref|YP_327702.1|	-	0.057	11.6	0.2	0.075	11.2	0.2	1.1	1	0	0	1	1	1	0	Septation	ring	formation	regulator,	EzrA
Zn_Tnp_IS1595	PF12760.7	gi|76803433|ref|YP_327702.1|	-	0.069	13.1	9.4	3.7	7.6	2.5	2.7	1	1	1	2	2	2	0	Transposase	zinc-ribbon	domain
DUF1610	PF07754.11	gi|76803433|ref|YP_327702.1|	-	0.082	12.9	8.6	0.4	10.7	2.9	2.4	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1610)
zf-ribbon_3	PF13248.6	gi|76803433|ref|YP_327702.1|	-	0.14	11.6	5.6	3.3	7.2	1.1	2.5	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-ISL3	PF14690.6	gi|76803433|ref|YP_327702.1|	-	0.89	10.3	6.1	9.7	7.0	1.3	3.1	3	0	0	3	3	3	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
Prim_Zn_Ribbon	PF08273.12	gi|76803433|ref|YP_327702.1|	-	1.1	9.7	9.8	2.6	8.4	0.0	3.2	3	0	0	3	3	3	0	Zinc-binding	domain	of	primase-helicase
RNA_POL_M_15KD	PF02150.16	gi|76803433|ref|YP_327702.1|	-	4.6	7.2	4.9	35	4.4	0.2	2.4	2	0	0	2	2	2	0	RNA	polymerases	M/15	Kd	subunit
Nudix_N_2	PF14803.6	gi|76803433|ref|YP_327702.1|	-	6.1	6.9	9.3	28	4.7	9.3	2.2	1	1	0	1	1	1	0	Nudix	N-terminal
HydF_tetramer	PF18133.1	gi|76803434|ref|YP_327703.1|	-	0.0073	16.0	0.0	0.011	15.4	0.0	1.3	1	0	0	1	1	1	1	Hydrogen	maturase	F	tetramerization	domain
RE_HaeII	PF09554.10	gi|76803434|ref|YP_327703.1|	-	0.13	11.5	0.0	0.15	11.3	0.0	1.1	1	0	0	1	1	1	0	HaeII	restriction	endonuclease
Phage_int_SAM_5	PF13102.6	gi|76803436|ref|YP_327705.1|	-	7.9e-07	29.3	0.0	1.7e-06	28.3	0.0	1.6	1	0	0	1	1	1	1	Phage	integrase	SAM-like	domain
Phage_int_SAM_1	PF02899.17	gi|76803436|ref|YP_327705.1|	-	0.00066	19.9	0.0	0.068	13.5	0.0	3.0	2	0	0	2	2	2	1	Phage	integrase,	N-terminal	SAM-like	domain
Phage_int_SAM_4	PF13495.6	gi|76803436|ref|YP_327705.1|	-	0.0025	18.2	0.0	0.0072	16.8	0.0	1.8	2	0	0	2	2	2	1	Phage	integrase,	N-terminal	SAM-like	domain
Phage_integrase	PF00589.22	gi|76803436|ref|YP_327705.1|	-	0.0059	16.4	0.0	0.042	13.6	0.0	2.3	1	1	0	1	1	1	1	Phage	integrase	family
RHH_6	PF16762.5	gi|76803436|ref|YP_327705.1|	-	0.12	13.0	0.1	1.8	9.2	0.0	2.5	2	0	0	2	2	2	0	Ribbon-helix-helix	domain
SPDY	PF03771.16	gi|76803437|ref|YP_327706.1|	-	0.0049	16.8	0.9	0.0049	16.8	0.9	2.0	1	1	1	2	2	2	1	Domain	of	unknown	function	(DUF317)
Penicillinase_R	PF03965.16	gi|76803438|ref|YP_327707.1|	-	0.00063	20.1	0.0	0.0011	19.4	0.0	1.5	1	0	0	1	1	1	1	Penicillinase	repressor
GPP34	PF05719.11	gi|76803438|ref|YP_327707.1|	-	0.029	14.4	0.4	0.051	13.6	0.3	1.4	1	1	0	1	1	1	0	Golgi	phosphoprotein	3	(GPP34)
EAP30	PF04157.16	gi|76803438|ref|YP_327707.1|	-	0.032	13.5	0.8	0.041	13.2	0.1	1.5	2	0	0	2	2	2	0	EAP30/Vps36	family
MerR_1	PF13411.6	gi|76803438|ref|YP_327707.1|	-	0.036	14.2	0.1	7.5	6.7	0.0	2.3	1	1	1	2	2	2	0	MerR	HTH	family	regulatory	protein
Mnd1	PF03962.15	gi|76803438|ref|YP_327707.1|	-	0.043	14.1	0.0	0.097	13.0	0.0	1.5	2	0	0	2	2	2	0	Mnd1	HTH	domain
TrmB	PF01978.19	gi|76803438|ref|YP_327707.1|	-	0.1	12.5	0.0	0.19	11.6	0.0	1.4	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
ATP-cone	PF03477.16	gi|76803439|ref|YP_327708.1|	-	1e-17	64.5	0.3	1.3e-17	64.1	0.3	1.2	1	0	0	1	1	1	1	ATP	cone	domain
Zn_Tnp_IS1595	PF12760.7	gi|76803439|ref|YP_327708.1|	-	0.0042	17.0	1.4	0.0064	16.5	1.4	1.3	1	0	0	1	1	1	1	Transposase	zinc-ribbon	domain
Ribonuc_red_sm	PF00268.21	gi|76803441|ref|YP_327710.1|	-	4.2e-49	167.5	2.7	4.2e-49	167.5	2.7	1.9	2	0	0	2	2	2	1	Ribonucleotide	reductase,	small	chain
DUF656	PF04920.12	gi|76803441|ref|YP_327710.1|	-	0.12	12.3	0.0	0.36	10.7	0.0	1.7	2	0	0	2	2	2	0	Family	of	unknown	function	(DUF656)
Ribonuc_red_lgC	PF02867.15	gi|76803442|ref|YP_327711.1|	-	3.7e-89	299.6	0.2	5.3e-32	111.0	0.1	3.0	1	1	2	3	3	3	3	Ribonucleotide	reductase,	barrel	domain
Ribonuc_red_lgN	PF00317.21	gi|76803442|ref|YP_327711.1|	-	0.00094	19.1	0.0	0.0032	17.4	0.0	2.0	1	0	0	1	1	1	1	Ribonucleotide	reductase,	all-alpha	domain
DUF1045	PF06299.12	gi|76803442|ref|YP_327711.1|	-	0.18	11.8	0.0	0.39	10.7	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1045)
tRNA-synt_1f	PF01921.18	gi|76803443|ref|YP_327712.1|	-	0.04	12.8	0.0	0.048	12.6	0.0	1.1	1	0	0	1	1	1	0	tRNA	synthetases	class	I	(K)
AAA_31	PF13614.6	gi|76803444|ref|YP_327713.1|	-	4.7e-23	82.0	0.0	7e-23	81.5	0.0	1.1	1	0	0	1	1	1	1	AAA	domain
CbiA	PF01656.23	gi|76803444|ref|YP_327713.1|	-	6e-13	49.0	0.0	6.9e-13	48.8	0.0	1.2	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
ArsA_ATPase	PF02374.15	gi|76803444|ref|YP_327713.1|	-	1.3e-05	24.6	0.0	1.6e-05	24.3	0.0	1.2	1	0	0	1	1	1	1	Anion-transporting	ATPase
ParA	PF10609.9	gi|76803444|ref|YP_327713.1|	-	0.00018	21.0	0.0	0.0008	18.9	0.0	1.8	2	0	0	2	2	2	1	NUBPL	iron-transfer	P-loop	NTPase
MipZ	PF09140.11	gi|76803444|ref|YP_327713.1|	-	0.00053	19.4	0.1	0.078	12.2	0.0	2.3	2	0	0	2	2	2	2	ATPase	MipZ
Fer4_NifH	PF00142.18	gi|76803444|ref|YP_327713.1|	-	0.015	14.7	0.0	0.029	13.8	0.0	1.5	1	0	0	1	1	1	0	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
CBP_BcsQ	PF06564.12	gi|76803444|ref|YP_327713.1|	-	0.073	12.5	0.0	0.15	11.5	0.0	1.5	1	0	0	1	1	1	0	Cellulose	biosynthesis	protein	BcsQ
FtsA	PF14450.6	gi|76803444|ref|YP_327713.1|	-	0.15	12.5	0.0	0.24	11.8	0.0	1.3	1	0	0	1	1	1	0	Cell	division	protein	FtsA
Herpes_env	PF01673.18	gi|76803444|ref|YP_327713.1|	-	0.17	10.8	0.0	0.3	10.0	0.0	1.4	1	1	0	1	1	1	0	Herpesvirus	putative	major	envelope	glycoprotein
IclR	PF01614.18	gi|76803445|ref|YP_327714.1|	-	1.3e-28	99.4	0.0	1.9e-28	98.9	0.0	1.2	1	0	0	1	1	1	1	Bacterial	transcriptional	regulator
HTH_24	PF13412.6	gi|76803445|ref|YP_327714.1|	-	1.5e-08	34.1	0.0	5.4e-08	32.3	0.0	1.9	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
MarR	PF01047.22	gi|76803445|ref|YP_327714.1|	-	4.2e-06	26.6	0.0	1e-05	25.4	0.0	1.6	1	0	0	1	1	1	1	MarR	family
HTH_20	PF12840.7	gi|76803445|ref|YP_327714.1|	-	4.4e-06	26.7	0.0	7.9e-05	22.6	0.0	2.7	3	0	0	3	3	3	1	Helix-turn-helix	domain
HTH_IclR	PF09339.10	gi|76803445|ref|YP_327714.1|	-	5.3e-06	26.1	0.0	2.6e-05	23.9	0.0	2.1	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
HTH_11	PF08279.12	gi|76803445|ref|YP_327714.1|	-	0.00021	21.1	0.0	0.00069	19.5	0.0	1.9	1	0	0	1	1	1	1	HTH	domain
HTH_5	PF01022.20	gi|76803445|ref|YP_327714.1|	-	0.001	18.9	0.0	0.0049	16.7	0.0	2.1	3	0	0	3	3	3	1	Bacterial	regulatory	protein,	arsR	family
GAF_2	PF13185.6	gi|76803445|ref|YP_327714.1|	-	0.0021	18.4	0.5	0.0041	17.4	0.4	1.6	1	1	0	1	1	1	1	GAF	domain
Fe_dep_repress	PF01325.19	gi|76803445|ref|YP_327714.1|	-	0.0034	17.6	0.0	0.0084	16.3	0.0	1.7	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_10	PF04967.12	gi|76803445|ref|YP_327714.1|	-	0.0094	15.7	0.0	0.046	13.5	0.0	2.0	2	0	0	2	2	2	1	HTH	DNA	binding	domain
TrmB	PF01978.19	gi|76803445|ref|YP_327714.1|	-	0.0095	15.8	0.0	0.033	14.1	0.0	1.9	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
VAPB_antitox	PF02697.14	gi|76803445|ref|YP_327714.1|	-	0.019	15.7	0.1	0.09	13.6	0.0	2.3	2	0	0	2	2	1	0	Putative	antitoxin
MarR_2	PF12802.7	gi|76803445|ref|YP_327714.1|	-	0.03	14.2	0.0	0.082	12.8	0.0	1.7	1	0	0	1	1	1	0	MarR	family
Mga	PF05043.13	gi|76803445|ref|YP_327714.1|	-	0.046	14.3	0.0	0.16	12.6	0.0	1.8	2	0	0	2	2	2	0	Mga	helix-turn-helix	domain
Dimerisation	PF08100.11	gi|76803445|ref|YP_327714.1|	-	0.052	13.6	0.0	0.15	12.1	0.0	1.8	1	0	0	1	1	1	0	Dimerisation	domain
GAF	PF01590.26	gi|76803445|ref|YP_327714.1|	-	0.064	13.9	0.0	0.14	12.8	0.0	1.7	2	1	0	2	2	2	0	GAF	domain
HTH_DeoR	PF08220.12	gi|76803445|ref|YP_327714.1|	-	0.078	12.7	0.0	0.32	10.8	0.0	2.1	1	0	0	1	1	1	0	DeoR-like	helix-turn-helix	domain
HTH_40	PF14493.6	gi|76803445|ref|YP_327714.1|	-	0.092	13.2	0.1	1.1	9.7	0.0	2.5	2	1	0	2	2	2	0	Helix-turn-helix	domain
RuvB_C	PF05491.13	gi|76803445|ref|YP_327714.1|	-	0.11	12.4	0.2	0.32	10.9	0.0	1.8	2	0	0	2	2	2	0	RuvB	C-terminal	winged	helix	domain
OrfB_IS605	PF01385.19	gi|76803446|ref|YP_327715.1|	-	3e-31	108.1	0.4	5.8e-31	107.2	0.4	1.4	1	0	0	1	1	1	1	Probable	transposase
OrfB_Zn_ribbon	PF07282.11	gi|76803446|ref|YP_327715.1|	-	1.4e-14	53.8	0.1	2.6e-14	52.9	0.1	1.5	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
TF_Zn_Ribbon	PF08271.12	gi|76803446|ref|YP_327715.1|	-	0.11	12.0	3.4	0.28	10.7	3.4	1.6	1	0	0	1	1	1	0	TFIIB	zinc-binding
DUF469	PF04320.14	gi|76803446|ref|YP_327715.1|	-	0.15	12.9	0.7	2.6	8.9	0.1	2.8	3	0	0	3	3	3	0	Protein	with	unknown	function	(DUF469)
Zn_Tnp_IS1	PF03811.13	gi|76803446|ref|YP_327715.1|	-	0.17	11.6	3.9	0.45	10.3	3.9	1.7	1	0	0	1	1	1	0	InsA	N-terminal	domain
Zn-ribbon_8	PF09723.10	gi|76803446|ref|YP_327715.1|	-	1.7	8.8	4.9	1.1	9.4	0.7	2.3	2	0	0	2	2	2	0	Zinc	ribbon	domain
Acyl-CoA_dh_1	PF00441.24	gi|76803447|ref|YP_327716.1|	-	1.1e-32	113.3	1.1	1.5e-32	112.8	1.1	1.2	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
Acyl-CoA_dh_M	PF02770.19	gi|76803447|ref|YP_327716.1|	-	1.1e-24	86.4	0.0	1.9e-24	85.6	0.0	1.4	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	middle	domain
Acyl-CoA_dh_N	PF02771.16	gi|76803447|ref|YP_327716.1|	-	1.5e-24	86.8	0.0	5.1e-24	85.1	0.0	1.9	2	0	0	2	2	2	1	Acyl-CoA	dehydrogenase,	N-terminal	domain
Acyl-CoA_dh_2	PF08028.11	gi|76803447|ref|YP_327716.1|	-	3.8e-10	40.2	0.7	6.8e-10	39.3	0.7	1.4	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
CoA_transf_3	PF02515.17	gi|76803448|ref|YP_327717.1|	-	7.7e-142	472.8	0.0	8.6e-142	472.6	0.0	1.0	1	0	0	1	1	1	1	CoA-transferase	family	III
ELFV_dehydrog_N	PF02812.18	gi|76803449|ref|YP_327718.1|	-	3.7e-19	68.9	0.0	4.9e-19	68.5	0.0	1.2	1	0	0	1	1	1	1	Glu/Leu/Phe/Val	dehydrogenase,	dimerisation	domain
DUF2564	PF10819.8	gi|76803449|ref|YP_327718.1|	-	0.0062	16.9	0.4	0.0085	16.5	0.4	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF2564)
ATP-synt_DE	PF00401.20	gi|76803449|ref|YP_327718.1|	-	0.11	12.8	1.0	0.16	12.2	1.0	1.2	1	0	0	1	1	1	0	ATP	synthase,	Delta/Epsilon	chain,	long	alpha-helix	domain
AFOR_C	PF01314.18	gi|76803450|ref|YP_327719.1|	-	2.7e-74	250.5	0.1	4.4e-74	249.8	0.1	1.3	1	0	0	1	1	1	1	Aldehyde	ferredoxin	oxidoreductase,	domains	2	&	3
AFOR_N	PF02730.15	gi|76803450|ref|YP_327719.1|	-	7.2e-63	212.0	0.0	1.7e-62	210.8	0.0	1.6	2	0	0	2	2	2	1	Aldehyde	ferredoxin	oxidoreductase,	N-terminal	domain
Aminotran_3	PF00202.21	gi|76803451|ref|YP_327720.1|	-	3.5e-118	394.8	0.0	4.3e-118	394.5	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class-III
Aminotran_1_2	PF00155.21	gi|76803451|ref|YP_327720.1|	-	0.035	13.3	0.0	0.084	12.0	0.0	1.6	2	0	0	2	2	2	0	Aminotransferase	class	I	and	II
THDPS_N_2	PF14805.6	gi|76803451|ref|YP_327720.1|	-	0.14	12.4	0.2	1.3	9.4	0.0	2.5	2	0	0	2	2	2	0	Tetrahydrodipicolinate	N-succinyltransferase	N-terminal
Peripla_BP_6	PF13458.6	gi|76803452|ref|YP_327721.1|	-	3e-47	162.0	3.3	4.7e-47	161.3	3.3	1.2	1	0	0	1	1	1	1	Periplasmic	binding	protein
ANF_receptor	PF01094.28	gi|76803452|ref|YP_327721.1|	-	3.1e-11	43.0	0.0	2e-10	40.3	0.0	2.1	1	1	0	1	1	1	1	Receptor	family	ligand	binding	region
Peripla_BP_5	PF13433.6	gi|76803452|ref|YP_327721.1|	-	2.2e-06	26.9	0.0	7e-06	25.3	0.0	1.7	1	1	0	1	1	1	1	Periplasmic	binding	protein	domain
TAT_signal	PF10518.9	gi|76803452|ref|YP_327721.1|	-	7.7e-05	22.4	4.3	7.7e-05	22.4	4.3	2.0	2	0	0	2	2	2	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Peripla_BP_4	PF13407.6	gi|76803452|ref|YP_327721.1|	-	0.00063	19.4	0.2	1.6	8.2	0.0	3.0	3	0	0	3	3	3	2	Periplasmic	binding	protein	domain
Bmp	PF02608.14	gi|76803452|ref|YP_327721.1|	-	0.0041	16.1	0.0	0.032	13.2	0.0	1.9	2	0	0	2	2	2	1	ABC	transporter	substrate-binding	protein	PnrA-like
UCR_Fe-S_N	PF10399.9	gi|76803452|ref|YP_327721.1|	-	0.068	12.5	0.2	0.15	11.4	0.2	1.6	1	0	0	1	1	1	0	Ubiquitinol-cytochrome	C	reductase	Fe-S	subunit	TAT	signal
Mur_ligase	PF01225.25	gi|76803452|ref|YP_327721.1|	-	0.071	13.4	0.0	0.63	10.4	0.0	2.5	3	0	0	3	3	3	0	Mur	ligase	family,	catalytic	domain
BPD_transp_2	PF02653.16	gi|76803453|ref|YP_327722.1|	-	1.7e-29	102.8	46.6	1.9e-29	102.7	46.6	1.0	1	0	0	1	1	1	1	Branched-chain	amino	acid	transport	system	/	permease	component
BPD_transp_2	PF02653.16	gi|76803454|ref|YP_327723.1|	-	3.8e-40	137.7	31.3	5e-40	137.4	31.3	1.1	1	0	0	1	1	1	1	Branched-chain	amino	acid	transport	system	/	permease	component
Pam17	PF08566.10	gi|76803454|ref|YP_327723.1|	-	0.98	9.3	2.9	0.82	9.5	1.2	1.7	1	1	1	2	2	2	0	Mitochondrial	import	protein	Pam17
ABC_tran	PF00005.27	gi|76803455|ref|YP_327724.1|	-	1.4e-28	100.2	0.0	2e-28	99.6	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|76803455|ref|YP_327724.1|	-	5.5e-09	36.2	1.5	0.00023	21.1	0.0	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
BCA_ABC_TP_C	PF12399.8	gi|76803455|ref|YP_327724.1|	-	3e-08	33.4	0.0	7.6e-08	32.1	0.0	1.7	1	0	0	1	1	1	1	Branched-chain	amino	acid	ATP-binding	cassette	transporter
SMC_N	PF02463.19	gi|76803455|ref|YP_327724.1|	-	1.8e-06	27.5	1.8	0.012	15.1	0.1	2.1	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_22	PF13401.6	gi|76803455|ref|YP_327724.1|	-	0.00011	22.5	0.0	0.00026	21.3	0.0	1.5	1	1	0	1	1	1	1	AAA	domain
AAA_29	PF13555.6	gi|76803455|ref|YP_327724.1|	-	0.00065	19.4	0.1	0.0013	18.5	0.1	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_15	PF13175.6	gi|76803455|ref|YP_327724.1|	-	0.0058	16.4	0.1	0.21	11.3	0.0	2.1	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA_23	PF13476.6	gi|76803455|ref|YP_327724.1|	-	0.023	15.2	0.7	0.031	14.8	0.7	1.4	1	1	0	1	1	1	0	AAA	domain
ATP_bind_1	PF03029.17	gi|76803455|ref|YP_327724.1|	-	0.058	13.2	0.2	0.13	12.0	0.0	1.7	2	1	0	2	2	2	0	Conserved	hypothetical	ATP	binding	protein
MMR_HSR1	PF01926.23	gi|76803455|ref|YP_327724.1|	-	0.062	13.4	1.0	0.29	11.2	0.8	2.4	1	1	0	1	1	1	0	50S	ribosome-binding	GTPase
AAA_16	PF13191.6	gi|76803455|ref|YP_327724.1|	-	0.11	12.9	0.0	0.16	12.4	0.0	1.2	1	0	0	1	1	1	0	AAA	ATPase	domain
AAA_24	PF13479.6	gi|76803455|ref|YP_327724.1|	-	0.13	12.0	0.1	0.4	10.4	0.0	1.8	2	0	0	2	2	2	0	AAA	domain
AAA_33	PF13671.6	gi|76803455|ref|YP_327724.1|	-	0.13	12.4	0.1	0.44	10.7	0.0	1.8	2	0	0	2	2	2	0	AAA	domain
ABC_tran	PF00005.27	gi|76803456|ref|YP_327725.1|	-	1e-23	84.4	0.0	1.4e-23	83.9	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|76803456|ref|YP_327725.1|	-	1e-09	38.6	0.0	2.1e-06	27.7	0.0	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_23	PF13476.6	gi|76803456|ref|YP_327725.1|	-	3.8e-07	30.8	0.8	6.2e-07	30.1	0.0	1.6	2	0	0	2	2	2	1	AAA	domain
SMC_N	PF02463.19	gi|76803456|ref|YP_327725.1|	-	4.4e-07	29.6	0.5	0.00013	21.5	0.1	2.1	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.6	gi|76803456|ref|YP_327725.1|	-	5.9e-05	22.7	0.1	0.00014	21.5	0.1	1.6	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_15	PF13175.6	gi|76803456|ref|YP_327725.1|	-	0.00078	19.3	0.0	0.0087	15.8	0.1	2.0	2	0	0	2	2	2	1	AAA	ATPase	domain
ABC_ATPase	PF09818.9	gi|76803456|ref|YP_327725.1|	-	0.0023	16.8	1.0	0.013	14.3	0.2	2.0	2	0	0	2	2	2	1	Predicted	ATPase	of	the	ABC	class
AAA_22	PF13401.6	gi|76803456|ref|YP_327725.1|	-	0.0029	17.9	0.1	0.0092	16.3	0.0	1.7	2	0	0	2	2	2	1	AAA	domain
RsgA_GTPase	PF03193.16	gi|76803456|ref|YP_327725.1|	-	0.024	14.5	0.0	0.04	13.8	0.0	1.4	1	0	0	1	1	1	0	RsgA	GTPase
AAA_27	PF13514.6	gi|76803456|ref|YP_327725.1|	-	0.025	14.2	0.0	0.053	13.1	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_30	PF13604.6	gi|76803456|ref|YP_327725.1|	-	0.038	13.7	0.2	0.31	10.8	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
AAA_24	PF13479.6	gi|76803456|ref|YP_327725.1|	-	0.039	13.7	0.1	0.089	12.5	0.0	1.5	2	0	0	2	2	2	0	AAA	domain
Adeno_IVa2	PF02456.15	gi|76803456|ref|YP_327725.1|	-	0.041	12.7	0.1	0.073	11.9	0.1	1.3	1	0	0	1	1	1	0	Adenovirus	IVa2	protein
ATPase_2	PF01637.18	gi|76803456|ref|YP_327725.1|	-	0.049	13.5	0.2	0.11	12.4	0.0	1.6	2	0	0	2	2	2	0	ATPase	domain	predominantly	from	Archaea
AAA_16	PF13191.6	gi|76803456|ref|YP_327725.1|	-	0.058	13.8	0.2	0.19	12.1	0.1	1.7	2	0	0	2	2	2	0	AAA	ATPase	domain
NACHT	PF05729.12	gi|76803456|ref|YP_327725.1|	-	0.059	13.3	0.2	0.14	12.1	0.1	1.6	2	0	0	2	2	2	0	NACHT	domain
AAA_33	PF13671.6	gi|76803456|ref|YP_327725.1|	-	0.21	11.7	0.1	0.47	10.6	0.1	1.5	2	0	0	2	2	2	0	AAA	domain
AAA_13	PF13166.6	gi|76803456|ref|YP_327725.1|	-	0.22	10.1	0.8	0.59	8.7	0.9	1.6	1	1	1	2	2	2	0	AAA	domain
HTH_24	PF13412.6	gi|76803457|ref|YP_327726.1|	-	8.7e-11	41.2	0.0	1.8e-10	40.2	0.0	1.6	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
AsnC_trans_reg	PF01037.21	gi|76803457|ref|YP_327726.1|	-	5.4e-09	35.9	0.1	7.9e-09	35.4	0.1	1.3	1	0	0	1	1	1	1	Lrp/AsnC	ligand	binding	domain
HTH_IclR	PF09339.10	gi|76803457|ref|YP_327726.1|	-	2e-06	27.5	0.0	4.1e-06	26.5	0.0	1.5	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
MarR_2	PF12802.7	gi|76803457|ref|YP_327726.1|	-	7.7e-06	25.7	0.0	2e-05	24.4	0.0	1.6	2	0	0	2	2	2	1	MarR	family
TrmB	PF01978.19	gi|76803457|ref|YP_327726.1|	-	1.2e-05	25.1	0.0	4.4e-05	23.3	0.0	1.9	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
Rio2_N	PF09202.11	gi|76803457|ref|YP_327726.1|	-	0.00021	21.4	0.0	0.0011	19.2	0.0	2.0	2	0	0	2	2	2	1	Rio2,	N-terminal
HTH_20	PF12840.7	gi|76803457|ref|YP_327726.1|	-	0.00037	20.5	0.0	0.00097	19.2	0.0	1.6	2	0	0	2	2	2	1	Helix-turn-helix	domain
TFIIE_alpha	PF02002.17	gi|76803457|ref|YP_327726.1|	-	0.0027	17.5	0.0	0.015	15.1	0.0	1.9	1	1	0	2	2	2	1	TFIIE	alpha	subunit
HTH_5	PF01022.20	gi|76803457|ref|YP_327726.1|	-	0.0032	17.3	0.0	0.0051	16.7	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_AsnC-type	PF13404.6	gi|76803457|ref|YP_327726.1|	-	0.0038	17.0	0.0	0.0076	16.1	0.0	1.5	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_11	PF08279.12	gi|76803457|ref|YP_327726.1|	-	0.0091	15.9	0.0	0.033	14.2	0.0	1.9	2	0	0	2	2	2	1	HTH	domain
B-block_TFIIIC	PF04182.12	gi|76803457|ref|YP_327726.1|	-	0.0093	16.1	0.0	0.019	15.1	0.0	1.4	1	0	0	1	1	1	1	B-block	binding	subunit	of	TFIIIC
Rrf2	PF02082.20	gi|76803457|ref|YP_327726.1|	-	0.012	15.9	0.0	0.042	14.2	0.0	1.8	1	0	0	1	1	1	0	Transcriptional	regulator
HTH_27	PF13463.6	gi|76803457|ref|YP_327726.1|	-	0.028	14.9	0.0	0.067	13.7	0.0	1.7	2	0	0	2	2	1	0	Winged	helix	DNA-binding	domain
RHH_3	PF12651.7	gi|76803457|ref|YP_327726.1|	-	0.047	13.7	0.1	1.4	8.9	0.0	2.6	2	0	0	2	2	2	0	Ribbon-helix-helix	domain
Mga	PF05043.13	gi|76803457|ref|YP_327726.1|	-	0.051	14.2	0.2	0.12	13.0	0.0	1.7	2	0	0	2	2	1	0	Mga	helix-turn-helix	domain
MarR	PF01047.22	gi|76803457|ref|YP_327726.1|	-	0.056	13.4	0.0	0.11	12.4	0.0	1.5	1	0	0	1	1	1	0	MarR	family
GYD	PF08734.11	gi|76803457|ref|YP_327726.1|	-	0.067	13.2	0.1	0.15	12.0	0.1	1.7	1	0	0	1	1	1	0	GYD	domain
HTH_1	PF00126.27	gi|76803457|ref|YP_327726.1|	-	0.11	12.5	0.0	1.5	8.8	0.0	2.4	2	1	0	2	2	1	0	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
Sulfolobus_pRN	PF05584.11	gi|76803457|ref|YP_327726.1|	-	0.14	12.2	0.0	0.32	11.0	0.0	1.6	1	0	0	1	1	1	0	Sulfolobus	plasmid	regulatory	protein
PAS_3	PF08447.12	gi|76803458|ref|YP_327727.1|	-	3e-42	142.8	1.8	2.4e-22	79.0	0.4	3.9	3	1	0	3	3	3	3	PAS	fold
PAS_9	PF13426.7	gi|76803458|ref|YP_327727.1|	-	3e-23	82.0	0.0	1.4e-10	41.3	0.0	3.7	3	0	0	3	3	3	3	PAS	domain
Response_reg	PF00072.24	gi|76803458|ref|YP_327727.1|	-	5e-21	75.0	0.0	1.3e-20	73.6	0.0	1.7	1	0	0	1	1	1	1	Response	regulator	receiver	domain
PAS_4	PF08448.10	gi|76803458|ref|YP_327727.1|	-	6.8e-20	71.4	4.2	6.9e-09	35.9	0.0	3.7	3	0	0	3	3	3	3	PAS	fold
HATPase_c	PF02518.26	gi|76803458|ref|YP_327727.1|	-	4.1e-18	65.9	0.0	8.7e-18	64.9	0.0	1.5	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS	PF00989.25	gi|76803458|ref|YP_327727.1|	-	1.3e-15	57.4	0.1	1.9e-05	24.6	0.0	3.6	3	0	0	3	3	3	3	PAS	fold
PAS_8	PF13188.7	gi|76803458|ref|YP_327727.1|	-	6.2e-10	38.9	0.6	0.0039	17.2	0.1	3.6	3	0	0	3	3	3	3	PAS	domain
HisKA	PF00512.25	gi|76803458|ref|YP_327727.1|	-	2.3e-09	37.1	0.1	1.3e-08	34.8	0.0	2.4	2	0	0	2	2	2	1	His	Kinase	A	(phospho-acceptor)	domain
HATPase_c_2	PF13581.6	gi|76803458|ref|YP_327727.1|	-	6.2e-05	23.0	0.3	0.00047	20.1	0.1	2.4	2	0	0	2	2	2	1	Histidine	kinase-like	ATPase	domain
PAS_11	PF14598.6	gi|76803458|ref|YP_327727.1|	-	0.0071	16.5	0.0	3.9	7.6	0.0	2.4	2	0	0	2	2	2	2	PAS	domain
OKR_DC_1_N	PF03709.15	gi|76803458|ref|YP_327727.1|	-	0.0074	16.5	0.0	0.021	15.1	0.0	1.9	1	0	0	1	1	1	1	Orn/Lys/Arg	decarboxylase,	N-terminal	domain
DndE	PF08870.11	gi|76803458|ref|YP_327727.1|	-	0.042	14.1	0.0	0.11	12.7	0.0	1.8	1	1	0	1	1	1	0	DNA	sulphur	modification	protein	DndE
PAS_7	PF12860.7	gi|76803458|ref|YP_327727.1|	-	0.23	11.6	1.1	0.78	9.9	0.0	2.5	3	0	0	3	3	2	0	PAS	fold
DUF5486	PF17588.2	gi|76803458|ref|YP_327727.1|	-	1.7	8.6	3.5	1.7	8.6	0.3	2.4	2	0	0	2	2	2	0	Family	of	unknown	function	(DUF5486)
FmdA_AmdA	PF03069.15	gi|76803459|ref|YP_327728.1|	-	9.9e-159	528.1	0.0	1.2e-158	527.9	0.0	1.0	1	0	0	1	1	1	1	Acetamidase/Formamidase	family
Cpn60_TCP1	PF00118.24	gi|76803460|ref|YP_327729.1|	-	8.3e-143	476.6	0.5	9.4e-143	476.4	0.5	1.0	1	0	0	1	1	1	1	TCP-1/cpn60	chaperonin	family
AAA_16	PF13191.6	gi|76803461|ref|YP_327730.1|	-	3.1e-11	43.9	0.3	1.1e-10	42.1	0.0	2.1	2	1	0	2	2	2	1	AAA	ATPase	domain
AAA	PF00004.29	gi|76803461|ref|YP_327730.1|	-	3.5e-11	43.7	0.2	1.7e-10	41.5	0.0	2.3	3	0	0	3	3	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Cdc6_C	PF09079.11	gi|76803461|ref|YP_327730.1|	-	7.7e-10	38.6	0.3	3e-09	36.7	0.0	2.2	3	0	0	3	3	2	1	CDC6,	C	terminal	winged	helix	domain
DUF815	PF05673.13	gi|76803461|ref|YP_327730.1|	-	2.5e-05	23.6	0.0	5.4e-05	22.5	0.0	1.5	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF815)
ATPase_2	PF01637.18	gi|76803461|ref|YP_327730.1|	-	5.1e-05	23.3	0.0	0.00018	21.5	0.0	2.0	2	1	0	2	2	1	1	ATPase	domain	predominantly	from	Archaea
AAA_22	PF13401.6	gi|76803461|ref|YP_327730.1|	-	6.9e-05	23.1	0.0	0.00023	21.5	0.0	1.9	1	0	0	1	1	1	1	AAA	domain
NACHT	PF05729.12	gi|76803461|ref|YP_327730.1|	-	0.00056	19.9	0.1	0.0017	18.3	0.0	1.8	2	1	0	2	2	2	1	NACHT	domain
TniB	PF05621.11	gi|76803461|ref|YP_327730.1|	-	0.0011	18.4	0.0	0.0055	16.1	0.0	2.1	1	1	0	1	1	1	1	Bacterial	TniB	protein
AAA_5	PF07728.14	gi|76803461|ref|YP_327730.1|	-	0.0012	18.8	0.1	0.1	12.6	0.0	2.8	3	0	0	3	3	3	1	AAA	domain	(dynein-related	subfamily)
RNA_helicase	PF00910.22	gi|76803461|ref|YP_327730.1|	-	0.0032	17.8	0.1	0.028	14.8	0.0	2.6	3	0	0	3	3	3	1	RNA	helicase
Sigma54_activat	PF00158.26	gi|76803461|ref|YP_327730.1|	-	0.0071	16.1	0.0	0.014	15.1	0.0	1.5	1	0	0	1	1	1	1	Sigma-54	interaction	domain
AAA_32	PF13654.6	gi|76803461|ref|YP_327730.1|	-	0.0091	14.8	0.3	2.3	6.9	0.5	2.3	2	0	0	2	2	2	2	AAA	domain
ABC_tran	PF00005.27	gi|76803461|ref|YP_327730.1|	-	0.012	16.1	0.0	0.047	14.2	0.0	2.1	2	0	0	2	2	2	0	ABC	transporter
MMR_HSR1	PF01926.23	gi|76803461|ref|YP_327730.1|	-	0.016	15.3	0.0	0.04	14.0	0.0	1.7	1	0	0	1	1	1	0	50S	ribosome-binding	GTPase
AAA_7	PF12775.7	gi|76803461|ref|YP_327730.1|	-	0.028	14.0	0.0	0.08	12.5	0.0	1.8	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
AAA_lid_10	PF17872.1	gi|76803461|ref|YP_327730.1|	-	0.057	13.6	0.0	0.5	10.5	0.0	2.4	2	0	0	2	2	2	0	AAA	lid	domain
PIF1	PF05970.14	gi|76803461|ref|YP_327730.1|	-	0.072	12.2	0.0	0.14	11.3	0.0	1.4	1	0	0	1	1	1	0	PIF1-like	helicase
IstB_IS21	PF01695.17	gi|76803461|ref|YP_327730.1|	-	0.083	12.6	0.0	0.21	11.3	0.0	1.7	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
Mg_chelatase	PF01078.21	gi|76803461|ref|YP_327730.1|	-	0.1	11.9	0.0	0.27	10.6	0.0	1.7	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
AAA_assoc_2	PF16193.5	gi|76803461|ref|YP_327730.1|	-	0.22	11.9	3.7	0.25	11.7	0.2	2.8	3	0	0	3	3	3	0	AAA	C-terminal	domain
AAA_25	PF13481.6	gi|76803461|ref|YP_327730.1|	-	0.67	9.5	4.4	1.3	8.5	0.5	2.8	2	1	0	2	2	2	0	AAA	domain
FAD_binding_7	PF03441.14	gi|76803462|ref|YP_327731.1|	-	5.7e-60	202.3	1.8	8.9e-60	201.6	1.8	1.3	1	0	0	1	1	1	1	FAD	binding	domain	of	DNA	photolyase
DNA_photolyase	PF00875.18	gi|76803462|ref|YP_327731.1|	-	1.9e-14	54.0	0.0	2.7e-10	40.5	0.0	2.5	2	0	0	2	2	2	2	DNA	photolyase
PEP_mutase	PF13714.6	gi|76803463|ref|YP_327732.1|	-	1.6e-52	178.3	0.4	2e-52	178.0	0.4	1.0	1	0	0	1	1	1	1	Phosphoenolpyruvate	phosphomutase
ICL	PF00463.21	gi|76803463|ref|YP_327732.1|	-	1.3e-14	53.7	0.2	2e-14	53.0	0.2	1.3	1	0	0	1	1	1	1	Isocitrate	lyase	family
Pantoate_transf	PF02548.15	gi|76803463|ref|YP_327732.1|	-	0.0097	15.3	0.0	0.018	14.5	0.0	1.4	1	0	0	1	1	1	1	Ketopantoate	hydroxymethyltransferase
Isochorismatase	PF00857.20	gi|76803464|ref|YP_327733.1|	-	3.5e-36	125.0	0.1	3.9e-36	124.8	0.1	1.0	1	0	0	1	1	1	1	Isochorismatase	family
Hydantoinase_B	PF02538.14	gi|76803465|ref|YP_327734.1|	-	4.7e-135	450.9	0.0	5.5e-135	450.7	0.0	1.0	1	0	0	1	1	1	1	Hydantoinase	B/oxoprolinase
Hydantoinase_A	PF01968.18	gi|76803466|ref|YP_327735.1|	-	2e-99	332.6	6.4	7.7e-98	327.3	2.2	2.3	2	0	0	2	2	2	2	Hydantoinase/oxoprolinase
Hydant_A_N	PF05378.13	gi|76803466|ref|YP_327735.1|	-	1.1e-48	165.3	0.3	5.7e-46	156.5	0.0	2.4	2	0	0	2	2	2	2	Hydantoinase/oxoprolinase	N-terminal	region
MutL	PF13941.6	gi|76803466|ref|YP_327735.1|	-	3.2e-06	26.0	4.8	0.0034	16.1	0.3	2.2	2	0	0	2	2	2	2	MutL	protein
FtsA	PF14450.6	gi|76803466|ref|YP_327735.1|	-	0.00051	20.4	0.5	1.7	9.1	0.0	2.7	2	0	0	2	2	2	2	Cell	division	protein	FtsA
BcrAD_BadFG	PF01869.20	gi|76803466|ref|YP_327735.1|	-	0.017	14.6	2.6	0.032	13.7	0.4	2.1	2	0	0	2	2	2	0	BadF/BadG/BcrA/BcrD	ATPase	family
ROK	PF00480.20	gi|76803466|ref|YP_327735.1|	-	0.044	13.2	0.2	0.16	11.4	0.0	2.0	2	0	0	2	2	2	0	ROK	family
ALF	PF03752.13	gi|76803466|ref|YP_327735.1|	-	0.061	13.3	0.6	0.2	11.6	0.6	1.9	1	0	0	1	1	1	0	Short	repeats	of	unknown	function
Ppx-GppA	PF02541.16	gi|76803466|ref|YP_327735.1|	-	0.075	12.4	1.4	0.095	12.1	0.3	1.7	2	0	0	2	2	2	0	Ppx/GppA	phosphatase	family
EutA	PF06277.11	gi|76803466|ref|YP_327735.1|	-	1	8.1	4.2	0.26	10.1	0.6	1.7	2	0	0	2	2	2	0	Ethanolamine	utilisation	protein	EutA
HTH_10	PF04967.12	gi|76803467|ref|YP_327736.1|	-	1.4e-20	72.8	0.2	2.4e-20	72.1	0.2	1.4	1	0	0	1	1	1	1	HTH	DNA	binding	domain
HTH_11	PF08279.12	gi|76803467|ref|YP_327736.1|	-	0.00013	21.9	0.1	0.00095	19.1	0.1	2.4	2	0	0	2	2	2	1	HTH	domain
HTH_24	PF13412.6	gi|76803467|ref|YP_327736.1|	-	0.00033	20.1	0.6	0.0014	18.2	0.1	2.2	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
HTH_Tnp_1_2	PF13022.6	gi|76803467|ref|YP_327736.1|	-	0.0013	18.9	0.1	0.0037	17.4	0.1	1.7	2	0	0	2	2	2	1	Helix-turn-helix	of	insertion	element	transposase
HTH_20	PF12840.7	gi|76803467|ref|YP_327736.1|	-	0.002	18.2	1.3	0.0033	17.4	0.1	2.0	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_5	PF01022.20	gi|76803467|ref|YP_327736.1|	-	0.003	17.4	0.5	0.0063	16.4	0.0	1.8	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
MarR_2	PF12802.7	gi|76803467|ref|YP_327736.1|	-	0.0036	17.2	0.1	0.033	14.1	0.0	2.3	2	0	0	2	2	2	1	MarR	family
Sigma70_r4	PF04545.16	gi|76803467|ref|YP_327736.1|	-	0.0072	15.8	0.4	0.017	14.6	0.4	1.7	1	0	0	1	1	1	1	Sigma-70,	region	4
GntR	PF00392.21	gi|76803467|ref|YP_327736.1|	-	0.027	14.1	0.1	0.17	11.5	0.2	2.2	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	gntR	family
HTH_22	PF13309.6	gi|76803467|ref|YP_327736.1|	-	0.033	14.3	0.0	0.71	10.0	0.0	2.6	3	0	0	3	3	3	0	HTH	domain
UPF0122	PF04297.14	gi|76803467|ref|YP_327736.1|	-	0.054	13.7	0.0	0.13	12.5	0.0	1.6	1	0	0	1	1	1	0	Putative	helix-turn-helix	protein,	YlxM	/	p13	like
Sigma70_r3	PF04539.16	gi|76803467|ref|YP_327736.1|	-	0.054	13.6	0.1	0.14	12.3	0.1	1.8	1	0	0	1	1	1	0	Sigma-70	region	3
HTH_17	PF12728.7	gi|76803467|ref|YP_327736.1|	-	0.066	13.4	0.1	0.3	11.3	0.0	2.0	2	0	0	2	2	2	0	Helix-turn-helix	domain
Mga	PF05043.13	gi|76803467|ref|YP_327736.1|	-	0.068	13.8	0.0	0.19	12.4	0.0	1.7	2	0	0	2	2	1	0	Mga	helix-turn-helix	domain
HTH_26	PF13443.6	gi|76803467|ref|YP_327736.1|	-	0.094	13.2	0.0	0.18	12.2	0.0	1.5	1	0	0	1	1	1	0	Cro/C1-type	HTH	DNA-binding	domain
ESX-1_EspG	PF14011.6	gi|76803468|ref|YP_327737.1|	-	0.01	15.5	0.5	0.01	15.4	0.5	1.1	1	0	0	1	1	1	0	EspG	family
OrfB_Zn_ribbon	PF07282.11	gi|76803469|ref|YP_327738.1|	-	1e-17	63.8	1.0	2.1e-17	62.8	1.0	1.6	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
OrfB_IS605	PF01385.19	gi|76803469|ref|YP_327738.1|	-	3.5e-17	62.7	0.0	1.5e-16	60.7	0.0	2.1	2	1	0	2	2	2	1	Probable	transposase
TF_Zn_Ribbon	PF08271.12	gi|76803469|ref|YP_327738.1|	-	0.066	12.7	4.5	0.15	11.6	4.5	1.5	1	0	0	1	1	1	0	TFIIB	zinc-binding
A2L_zn_ribbon	PF08792.10	gi|76803469|ref|YP_327738.1|	-	0.072	12.8	2.7	0.22	11.3	2.7	1.8	1	0	0	1	1	1	0	A2L	zinc	ribbon	domain
zf_Rg	PF17915.1	gi|76803469|ref|YP_327738.1|	-	0.088	12.2	2.3	0.63	9.5	1.9	2.2	2	0	0	2	2	2	0	Reverse	gyrase	zinc	finger
TRAM	PF01938.20	gi|76803470|ref|YP_327739.1|	-	2.9e-15	56.0	3.1	1e-14	54.3	1.9	2.0	2	0	0	2	2	2	1	TRAM	domain
Hexapep	PF00132.24	gi|76803474|ref|YP_327743.1|	-	6.4e-08	32.0	1.2	0.00055	19.6	0.0	3.3	3	0	0	3	3	3	2	Bacterial	transferase	hexapeptide	(six	repeats)
Hexapep_2	PF14602.6	gi|76803474|ref|YP_327743.1|	-	0.013	15.2	4.1	0.42	10.4	0.4	3.1	3	1	0	3	3	3	0	Hexapeptide	repeat	of	succinyl-transferase
FeThRed_A	PF02941.15	gi|76803474|ref|YP_327743.1|	-	0.17	12.1	0.0	2.2	8.5	0.0	2.3	2	0	0	2	2	2	0	Ferredoxin	thioredoxin	reductase	variable	alpha	chain
KAR9	PF08580.10	gi|76803476|ref|YP_327745.1|	-	0.044	12.3	0.0	0.052	12.1	0.0	1.1	1	0	0	1	1	1	0	Yeast	cortical	protein	KAR9
PDDEXK_1	PF12705.7	gi|76803478|ref|YP_327747.1|	-	9.6e-23	81.4	1.4	1.6e-22	80.7	1.4	1.3	1	0	0	1	1	1	1	PD-(D/E)XK	nuclease	superfamily
DUF2800	PF10926.8	gi|76803478|ref|YP_327747.1|	-	2.2e-05	23.9	0.0	3.3e-05	23.3	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF2800)
DUF3046	PF11248.8	gi|76803478|ref|YP_327747.1|	-	0.034	14.5	0.1	0.1	13.0	0.0	1.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3046)
DUF234	PF03008.14	gi|76803479|ref|YP_327748.1|	-	8e-26	90.4	0.0	1.7e-25	89.3	0.0	1.5	1	0	0	1	1	1	1	Archaea	bacterial	proteins	of	unknown	function
ATPase_2	PF01637.18	gi|76803479|ref|YP_327748.1|	-	1.3e-24	87.4	0.0	2.2e-24	86.7	0.0	1.4	1	0	0	1	1	1	1	ATPase	domain	predominantly	from	Archaea
AAA_14	PF13173.6	gi|76803479|ref|YP_327748.1|	-	6.4e-10	39.2	0.0	1.5e-09	38.0	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
AAA_16	PF13191.6	gi|76803479|ref|YP_327748.1|	-	6.6e-08	33.1	0.0	1.8e-07	31.7	0.0	1.9	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_22	PF13401.6	gi|76803479|ref|YP_327748.1|	-	7.7e-05	23.0	0.0	0.00017	21.9	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
HTH_IclR	PF09339.10	gi|76803479|ref|YP_327748.1|	-	0.011	15.5	0.0	0.02	14.7	0.0	1.4	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
HTH_24	PF13412.6	gi|76803479|ref|YP_327748.1|	-	0.016	14.7	0.0	0.029	13.9	0.0	1.4	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HTH_5	PF01022.20	gi|76803479|ref|YP_327748.1|	-	0.04	13.8	0.0	0.076	12.9	0.0	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
HTH_45	PF14947.6	gi|76803479|ref|YP_327748.1|	-	0.057	13.4	0.0	0.12	12.3	0.0	1.5	1	0	0	1	1	1	0	Winged	helix-turn-helix
TniB	PF05621.11	gi|76803479|ref|YP_327748.1|	-	0.19	11.2	0.0	0.36	10.2	0.0	1.5	1	1	0	1	1	1	0	Bacterial	TniB	protein
Mrr_cat	PF04471.12	gi|76803480|ref|YP_327749.1|	-	3.1e-28	98.1	0.0	3.4e-28	98.0	0.0	1.0	1	0	0	1	1	1	1	Restriction	endonuclease
DDE_Tnp_1	PF01609.21	gi|76803481|ref|YP_327750.1|	-	3.7e-10	39.8	1.7	6.4e-09	35.8	1.7	2.2	1	1	0	1	1	1	1	Transposase	DDE	domain
DUF772	PF05598.11	gi|76803481|ref|YP_327750.1|	-	0.00073	19.5	0.5	0.0017	18.3	0.3	1.8	2	0	0	2	2	2	1	Transposase	domain	(DUF772)
Anti-TRAP	PF15777.5	gi|76803482|ref|YP_327751.1|	-	0.2	11.7	2.8	0.7	9.9	0.5	2.2	2	0	0	2	2	2	0	Tryptophan	RNA-binding	attenuator	protein	inhibitory	protein
ArabFuran-catal	PF09206.11	gi|76803483|ref|YP_327752.1|	-	0.011	15.0	0.1	0.016	14.5	0.1	1.2	1	0	0	1	1	1	0	Alpha-L-arabinofuranosidase	B,	catalytic
GATase	PF00117.28	gi|76803484|ref|YP_327753.1|	-	8.2e-20	71.4	0.0	1.1e-19	70.9	0.0	1.1	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
Peptidase_C26	PF07722.13	gi|76803484|ref|YP_327753.1|	-	1.5e-05	24.9	0.6	0.00019	21.2	0.6	2.3	1	1	0	1	1	1	1	Peptidase	C26
GCS2	PF04107.13	gi|76803485|ref|YP_327754.1|	-	3.2e-10	39.8	0.1	6e-10	38.9	0.1	1.4	1	0	0	1	1	1	1	Glutamate-cysteine	ligase	family	2(GCS2)
HTH_33	PF13592.6	gi|76803485|ref|YP_327754.1|	-	0.024	14.3	0.0	0.089	12.5	0.0	2.0	2	0	0	2	2	2	0	Winged	helix-turn	helix
AA_permease_2	PF13520.6	gi|76803486|ref|YP_327755.1|	-	7.3e-48	163.4	50.5	9.5e-48	163.1	50.5	1.1	1	0	0	1	1	1	1	Amino	acid	permease
AA_permease	PF00324.21	gi|76803486|ref|YP_327755.1|	-	2.1e-35	122.3	46.4	3e-35	121.8	46.4	1.3	1	0	0	1	1	1	1	Amino	acid	permease
Usp	PF00582.26	gi|76803486|ref|YP_327755.1|	-	7.2e-23	81.7	6.6	6.3e-14	52.7	1.7	2.3	2	0	0	2	2	2	2	Universal	stress	protein	family
Spore_permease	PF03845.13	gi|76803486|ref|YP_327755.1|	-	5.8e-05	22.1	21.4	0.00014	20.9	21.4	1.6	1	0	0	1	1	1	1	Spore	germination	protein
Usp	PF00582.26	gi|76803487|ref|YP_327756.1|	-	2.6e-08	34.5	0.9	0.00017	22.1	0.2	2.7	1	1	1	2	2	2	2	Universal	stress	protein	family
Form_Nir_trans	PF01226.17	gi|76803488|ref|YP_327757.1|	-	6.1e-42	143.6	22.0	7e-42	143.4	22.0	1.0	1	0	0	1	1	1	1	Formate/nitrite	transporter
OrfB_IS605	PF01385.19	gi|76803490|ref|YP_327759.1|	-	1.3e-18	67.4	0.0	5.5e-18	65.3	0.0	2.1	2	1	0	2	2	2	1	Probable	transposase
OrfB_Zn_ribbon	PF07282.11	gi|76803490|ref|YP_327759.1|	-	7.7e-18	64.2	1.1	1.7e-17	63.1	1.1	1.6	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
zf_Rg	PF17915.1	gi|76803490|ref|YP_327759.1|	-	0.032	13.6	2.1	0.24	10.8	1.7	2.3	2	0	0	2	2	2	0	Reverse	gyrase	zinc	finger
TF_Zn_Ribbon	PF08271.12	gi|76803490|ref|YP_327759.1|	-	0.09	12.3	4.2	0.2	11.2	4.2	1.5	1	0	0	1	1	1	0	TFIIB	zinc-binding
NucS	PF01939.16	gi|76803491|ref|YP_327760.1|	-	4.1e-05	23.0	0.0	7.3e-05	22.2	0.0	1.3	1	0	0	1	1	1	1	Endonuclease	NucS
LPAM_1	PF08139.12	gi|76803492|ref|YP_327761.1|	-	0.074	13.6	0.3	0.13	12.8	0.3	1.3	1	0	0	1	1	1	0	Prokaryotic	membrane	lipoprotein	lipid	attachment	site
#
# Program:         hmmscan
# Version:         3.2.1 (June 2018)
# Pipeline mode:   SCAN
# Query file:      /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Natronomonas_pharaonis_DSM_2160_uid58435/NC_007427.faa
# Target file:     /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm
# Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Natronomonas_pharaonis_DSM_2160_uid58435/NC_007427.PFam32-A --tblout /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Natronomonas_pharaonis_DSM_2160_uid58435/NC_007427.PFam32-A.tblout --cpu 20 /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Natronomonas_pharaonis_DSM_2160_uid58435/NC_007427.faa 
# Current dir:     /oak/stanford/groups/akundaje/marinovg/genomes
# Date:            Mon Mar 25 15:56:45 2019
# [ok]