# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- DUF2072 PF09845.4 gi|452205863|ref|YP_007485985.1| - 1.2e-26 93.1 0.1 1.7e-12 47.4 0.0 2.5 2 0 0 2 2 2 2 Zn-ribbon containing protein (DUF2072) DUF1451 PF07295.6 gi|452205863|ref|YP_007485985.1| - 0.03 14.0 1.0 0.07 12.8 0.6 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1451) Zn-ribbon_8 PF09723.5 gi|452205863|ref|YP_007485985.1| - 0.12 12.3 3.6 0.34 10.9 2.5 1.7 1 1 0 1 1 1 0 Zinc ribbon domain DUF2073 PF09846.4 gi|452205864|ref|YP_007485986.1| - 2e-45 152.7 0.3 2.5e-45 152.3 0.2 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2073) MMR_HSR1 PF01926.18 gi|452205865|ref|YP_007485987.1| - 1.1e-15 57.5 0.0 1.7e-15 57.0 0.0 1.2 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU PF00009.22 gi|452205865|ref|YP_007485987.1| - 9.7e-14 51.2 0.4 1.7e-07 30.8 0.1 2.7 2 2 0 2 2 2 2 Elongation factor Tu GTP binding domain Arf PF00025.16 gi|452205865|ref|YP_007485987.1| - 1.5e-07 30.8 0.1 9e-05 21.7 0.1 2.7 2 1 1 3 3 3 2 ADP-ribosylation factor family FeoB_N PF02421.13 gi|452205865|ref|YP_007485987.1| - 1.1e-05 24.7 0.8 0.00011 21.5 0.6 2.3 1 1 0 1 1 1 1 Ferrous iron transport protein B AAA_17 PF13207.1 gi|452205865|ref|YP_007485987.1| - 0.00011 23.0 0.2 0.00028 21.6 0.2 1.8 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|452205865|ref|YP_007485987.1| - 0.00028 21.2 0.0 0.00049 20.4 0.0 1.6 1 1 0 1 1 1 1 AAA domain Ras PF00071.17 gi|452205865|ref|YP_007485987.1| - 0.00059 19.2 0.0 0.074 12.4 0.0 2.4 2 1 0 2 2 2 1 Ras family AAA_22 PF13401.1 gi|452205865|ref|YP_007485987.1| - 0.0011 19.0 0.0 0.0023 18.0 0.0 1.5 1 1 0 1 1 1 1 AAA domain Septin PF00735.13 gi|452205865|ref|YP_007485987.1| - 0.0015 17.6 0.0 0.0037 16.3 0.0 1.4 1 1 0 2 2 2 1 Septin SRPRB PF09439.5 gi|452205865|ref|YP_007485987.1| - 0.0026 17.0 0.0 0.037 13.2 0.0 2.2 2 0 0 2 2 2 1 Signal recognition particle receptor beta subunit AAA_16 PF13191.1 gi|452205865|ref|YP_007485987.1| - 0.004 17.1 0.0 0.0078 16.2 0.0 1.8 1 1 0 1 1 1 1 AAA ATPase domain Miro PF08477.8 gi|452205865|ref|YP_007485987.1| - 0.0046 17.4 0.0 0.03 14.7 0.0 2.0 1 1 0 1 1 1 1 Miro-like protein cobW PF02492.14 gi|452205865|ref|YP_007485987.1| - 0.008 15.6 0.5 1 8.7 0.4 2.6 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain Dynamin_N PF00350.18 gi|452205865|ref|YP_007485987.1| - 0.0093 15.7 0.0 0.72 9.6 0.0 2.3 1 1 1 2 2 2 1 Dynamin family RNA_helicase PF00910.17 gi|452205865|ref|YP_007485987.1| - 0.016 15.3 0.0 0.031 14.4 0.0 1.6 1 0 0 1 1 1 0 RNA helicase Zeta_toxin PF06414.7 gi|452205865|ref|YP_007485987.1| - 0.017 14.2 0.1 0.048 12.7 0.0 1.7 2 0 0 2 2 2 0 Zeta toxin MMR_HSR1_C PF08438.5 gi|452205865|ref|YP_007485987.1| - 0.02 15.1 0.1 0.051 13.8 0.0 1.7 2 0 0 2 2 2 0 GTPase of unknown function C-terminal ABC_tran PF00005.22 gi|452205865|ref|YP_007485987.1| - 0.022 15.0 0.0 0.029 14.6 0.0 1.5 1 1 0 1 1 1 0 ABC transporter AAA PF00004.24 gi|452205865|ref|YP_007485987.1| - 0.022 14.9 0.1 0.12 12.6 0.0 2.0 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.1 gi|452205865|ref|YP_007485987.1| - 0.025 14.5 0.2 0.12 12.3 0.0 1.9 1 1 1 2 2 2 0 AAA domain ArgK PF03308.11 gi|452205865|ref|YP_007485987.1| - 0.042 12.6 0.2 0.46 9.2 0.0 2.5 2 1 0 2 2 2 0 ArgK protein NB-ARC PF00931.17 gi|452205865|ref|YP_007485987.1| - 0.051 12.4 0.0 0.082 11.7 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain AIG1 PF04548.11 gi|452205865|ref|YP_007485987.1| - 0.052 12.6 0.2 0.34 9.9 0.0 2.0 1 1 0 2 2 2 0 AIG1 family AAA_14 PF13173.1 gi|452205865|ref|YP_007485987.1| - 0.076 12.9 0.0 0.17 11.7 0.0 2.0 1 1 0 1 1 1 0 AAA domain Arch_ATPase PF01637.13 gi|452205865|ref|YP_007485987.1| - 0.087 12.5 0.0 0.13 11.8 0.0 1.5 1 1 0 1 1 1 0 Archaeal ATPase AAA_19 PF13245.1 gi|452205865|ref|YP_007485987.1| - 0.095 12.4 0.5 0.42 10.4 0.0 2.1 2 0 0 2 2 2 0 Part of AAA domain PduV-EutP PF10662.4 gi|452205865|ref|YP_007485987.1| - 0.11 12.0 0.1 8.9 5.7 0.0 2.7 3 0 0 3 3 3 0 Ethanolamine utilisation - propanediol utilisation Cdc6_C PF09079.6 gi|452205866|ref|YP_007485988.1| - 1.8e-27 94.8 0.1 6.3e-27 93.1 0.1 2.0 2 0 0 2 2 1 1 CDC6, C terminal AAA_16 PF13191.1 gi|452205866|ref|YP_007485988.1| - 2.1e-11 44.1 3.1 2.6e-10 40.5 0.0 2.5 3 0 0 3 3 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|452205866|ref|YP_007485988.1| - 2.7e-10 40.4 0.1 3.2e-09 36.9 0.1 2.4 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|452205866|ref|YP_007485988.1| - 3.6e-08 33.6 0.1 0.0039 17.3 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) Arch_ATPase PF01637.13 gi|452205866|ref|YP_007485988.1| - 0.00012 21.8 0.0 0.0003 20.5 0.0 1.6 1 0 0 1 1 1 1 Archaeal ATPase T2SE PF00437.15 gi|452205866|ref|YP_007485988.1| - 0.0003 19.7 0.4 0.00068 18.6 0.1 1.7 1 1 0 1 1 1 1 Type II/IV secretion system protein DUF2498 PF10692.4 gi|452205866|ref|YP_007485988.1| - 0.0012 18.3 0.0 0.65 9.6 0.0 2.7 2 0 0 2 2 2 1 Protein of unknown function (DUF2498) AAA_18 PF13238.1 gi|452205866|ref|YP_007485988.1| - 0.0015 18.8 0.1 0.0052 17.0 0.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_2 PF07724.9 gi|452205866|ref|YP_007485988.1| - 0.0018 18.1 0.0 0.0084 16.0 0.0 2.1 1 1 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_17 PF13207.1 gi|452205866|ref|YP_007485988.1| - 0.0019 18.9 0.3 0.0072 17.1 0.0 2.2 2 0 0 2 2 1 1 AAA domain DUF815 PF05673.8 gi|452205866|ref|YP_007485988.1| - 0.0023 16.8 0.0 0.0047 15.8 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF815) Sigma54_activat PF00158.21 gi|452205866|ref|YP_007485988.1| - 0.0028 17.1 0.0 0.007 15.8 0.0 1.6 1 0 0 1 1 1 1 Sigma-54 interaction domain RuvB_N PF05496.7 gi|452205866|ref|YP_007485988.1| - 0.006 15.6 0.0 0.015 14.3 0.0 1.6 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus DEAD PF00270.24 gi|452205866|ref|YP_007485988.1| - 0.0076 15.7 1.0 2 7.8 0.0 2.9 3 0 0 3 3 3 1 DEAD/DEAH box helicase NB-ARC PF00931.17 gi|452205866|ref|YP_007485988.1| - 0.011 14.6 0.0 0.017 13.9 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain AAA_24 PF13479.1 gi|452205866|ref|YP_007485988.1| - 0.048 13.2 0.0 0.097 12.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|452205866|ref|YP_007485988.1| - 0.061 13.6 0.0 0.2 11.9 0.0 2.0 2 1 0 2 2 2 0 ABC transporter Rad17 PF03215.10 gi|452205866|ref|YP_007485988.1| - 0.079 11.6 0.0 0.31 9.6 0.0 1.8 2 0 0 2 2 2 0 Rad17 cell cycle checkpoint protein KAP_NTPase PF07693.9 gi|452205866|ref|YP_007485988.1| - 0.12 11.3 0.1 0.3 10.0 0.1 1.7 1 1 0 1 1 1 0 KAP family P-loop domain RNA_helicase PF00910.17 gi|452205866|ref|YP_007485988.1| - 0.15 12.2 0.0 0.39 10.9 0.0 1.7 1 0 0 1 1 1 0 RNA helicase Abhydrolase_6 PF12697.2 gi|452205868|ref|YP_007485990.1| - 1.3e-26 93.9 10.8 1.5e-26 93.7 7.5 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|452205868|ref|YP_007485990.1| - 7e-13 48.5 0.1 1.2e-12 47.8 0.1 1.3 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|452205868|ref|YP_007485990.1| - 2.1e-12 47.1 0.3 3.1e-11 43.2 0.2 2.0 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_2 PF02230.11 gi|452205868|ref|YP_007485990.1| - 0.0033 16.9 0.0 0.019 14.3 0.0 1.9 2 0 0 2 2 2 1 Phospholipase/Carboxylesterase Abhydrolase_4 PF08386.5 gi|452205868|ref|YP_007485990.1| - 0.0051 16.6 0.0 0.01 15.7 0.0 1.4 1 0 0 1 1 1 1 TAP-like protein UPF0227 PF05728.7 gi|452205868|ref|YP_007485990.1| - 0.19 11.4 0.0 0.29 10.8 0.0 1.2 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0227) Aminotran_5 PF00266.14 gi|452205869|ref|YP_007485991.1| - 2.7e-56 190.9 0.0 9.3e-55 185.8 0.0 1.9 2 0 0 2 2 2 2 Aminotransferase class-V Cys_Met_Meta_PP PF01053.15 gi|452205869|ref|YP_007485991.1| - 0.00043 18.6 0.0 0.00056 18.2 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme zf-ribbon_3 PF13248.1 gi|452205870|ref|YP_007485992.1| - 0.0019 17.3 1.0 0.27 10.4 0.1 2.2 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.2 gi|452205870|ref|YP_007485992.1| - 0.0039 16.9 1.1 0.006 16.3 0.7 1.4 1 1 0 1 1 1 1 Double zinc ribbon UPF0547 PF10571.4 gi|452205870|ref|YP_007485992.1| - 0.0066 16.1 1.1 0.63 9.7 0.1 2.2 2 0 0 2 2 2 1 Uncharacterised protein family UPF0547 zinc_ribbon_2 PF13240.1 gi|452205870|ref|YP_007485992.1| - 0.022 14.2 2.8 2.4 7.7 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-HYPF PF07503.7 gi|452205870|ref|YP_007485992.1| - 0.027 13.8 1.8 0.59 9.6 0.1 2.2 2 0 0 2 2 2 0 HypF finger UPF0167 PF03691.9 gi|452205870|ref|YP_007485992.1| - 0.082 12.3 0.2 0.087 12.2 0.1 1.0 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0167) Prok-RING_1 PF14446.1 gi|452205870|ref|YP_007485992.1| - 0.14 11.8 1.9 1.2 8.9 0.1 2.1 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 Nudix_N_2 PF14803.1 gi|452205870|ref|YP_007485992.1| - 0.25 11.0 2.6 1.9 8.2 1.8 2.0 1 1 0 1 1 1 0 Nudix N-terminal Zn-ribbon_8 PF09723.5 gi|452205870|ref|YP_007485992.1| - 1.2 9.1 5.3 15 5.5 3.7 2.1 1 1 0 1 1 1 0 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|452205870|ref|YP_007485992.1| - 1.3 8.8 5.3 0.75 9.6 0.4 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zf-NADH-PPase PF09297.6 gi|452205870|ref|YP_007485992.1| - 1.4 8.4 4.5 6.2 6.4 0.4 2.3 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain RecR PF02132.10 gi|452205870|ref|YP_007485992.1| - 5.5 6.5 6.1 45 3.6 4.3 2.0 1 1 0 1 1 1 0 RecR protein Rib_5-P_isom_A PF06026.9 gi|452205872|ref|YP_007485994.1| - 4.2e-53 179.2 0.0 5.1e-53 178.9 0.0 1.1 1 0 0 1 1 1 1 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DeoRC PF00455.17 gi|452205872|ref|YP_007485994.1| - 9.8e-07 28.5 0.2 7.1e-05 22.5 0.1 2.2 2 0 0 2 2 2 2 DeoR C terminal sensor domain Sugar-bind PF04198.8 gi|452205872|ref|YP_007485994.1| - 0.14 11.0 0.0 0.22 10.3 0.0 1.2 1 0 0 1 1 1 0 Putative sugar-binding domain OrfB_IS605 PF01385.14 gi|452205873|ref|YP_007485995.1| - 3.1e-61 206.6 1.3 3.9e-61 206.3 0.9 1.1 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|452205873|ref|YP_007485995.1| - 1.4e-20 72.7 0.9 2.8e-20 71.7 0.6 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Ribosomal_L37ae PF01780.14 gi|452205873|ref|YP_007485995.1| - 0.17 11.7 1.8 0.33 10.8 0.4 2.0 2 0 0 2 2 2 0 Ribosomal L37ae protein family C1_3 PF07649.7 gi|452205873|ref|YP_007485995.1| - 0.21 11.6 2.4 0.62 10.1 1.6 1.9 1 0 0 1 1 1 0 C1-like domain Histone PF00125.19 gi|452205874|ref|YP_007485996.1| - 0.00033 20.7 0.0 0.00038 20.5 0.0 1.4 1 1 0 1 1 1 1 Core histone H2A/H2B/H3/H4 DUF1931 PF09123.6 gi|452205874|ref|YP_007485996.1| - 0.00056 19.8 0.6 0.0006 19.7 0.4 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1931) CBFD_NFYB_HMF PF00808.18 gi|452205874|ref|YP_007485996.1| - 0.0018 18.2 0.1 0.0027 17.7 0.0 1.5 1 1 0 1 1 1 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone SBP_bac_7 PF03480.8 gi|452205874|ref|YP_007485996.1| - 0.071 12.1 0.0 0.075 12.1 0.0 1.1 1 0 0 1 1 1 0 Bacterial extracellular solute-binding protein, family 7 AIRC PF00731.15 gi|452205875|ref|YP_007485997.1| - 1.3e-14 53.7 7.3 1.3e-14 53.7 1.5 2.2 2 0 0 2 2 2 2 AIR carboxylase DZR PF12773.2 gi|452205876|ref|YP_007485998.1| - 0.0089 15.8 0.8 0.011 15.4 0.5 1.3 1 1 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|452205876|ref|YP_007485998.1| - 0.017 14.2 1.8 0.15 11.3 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain RNA_POL_M_15KD PF02150.11 gi|452205876|ref|YP_007485998.1| - 0.065 12.9 0.5 1.8 8.3 0.0 2.1 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit PhnA_Zn_Ribbon PF08274.7 gi|452205876|ref|YP_007485998.1| - 0.15 11.8 1.6 9.5 6.1 0.1 2.1 2 0 0 2 2 2 0 PhnA Zinc-Ribbon zinc_ribbon_2 PF13240.1 gi|452205876|ref|YP_007485998.1| - 0.15 11.6 1.4 0.84 9.2 1.0 2.0 1 1 0 1 1 1 0 zinc-ribbon domain RNHCP PF12647.2 gi|452205876|ref|YP_007485998.1| - 0.17 11.7 1.7 0.21 11.4 1.2 1.2 1 0 0 1 1 1 0 RNHCP domain Ogr_Delta PF04606.7 gi|452205876|ref|YP_007485998.1| - 0.27 10.9 2.0 1.6 8.4 0.2 2.1 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger zinc_ribbon_4 PF13717.1 gi|452205876|ref|YP_007485998.1| - 0.33 10.6 1.7 1.5 8.5 0.0 2.1 2 0 0 2 2 2 0 zinc-ribbon domain UPF0547 PF10571.4 gi|452205876|ref|YP_007485998.1| - 0.36 10.5 4.4 2 8.2 0.5 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zinc_ribbon_5 PF13719.1 gi|452205876|ref|YP_007485998.1| - 0.38 10.3 1.8 1.6 8.4 0.0 2.1 2 0 0 2 2 2 0 zinc-ribbon domain zf-NADH-PPase PF09297.6 gi|452205876|ref|YP_007485998.1| - 0.45 10.0 0.1 0.45 10.0 0.1 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zf-RING_3 PF14369.1 gi|452205876|ref|YP_007485998.1| - 1.3 9.0 3.9 9.1 6.3 2.6 2.1 1 1 0 1 1 1 0 zinc-finger DUF1272 PF06906.6 gi|452205876|ref|YP_007485998.1| - 1.5 8.7 5.3 52 3.7 3.7 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF1272) GIY-YIG PF01541.19 gi|452205877|ref|YP_007485999.1| - 3.4e-12 46.5 0.0 4e-12 46.3 0.0 1.0 1 0 0 1 1 1 1 GIY-YIG catalytic domain T5orf172 PF10544.4 gi|452205877|ref|YP_007485999.1| - 0.00044 20.5 0.0 0.00056 20.2 0.0 1.1 1 0 0 1 1 1 1 T5orf172 domain MUG113 PF13455.1 gi|452205877|ref|YP_007485999.1| - 0.087 13.2 0.1 0.15 12.5 0.0 1.4 1 1 0 1 1 1 0 Meiotically up-regulated gene 113 Peptidase_M54 PF07998.6 gi|452205878|ref|YP_007486000.1| - 1.1e-23 84.0 0.0 1.3e-23 83.7 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M54 Peptidase_M10 PF00413.19 gi|452205878|ref|YP_007486000.1| - 3.4e-05 23.6 0.0 3.4e-05 23.5 0.0 1.2 1 0 0 1 1 1 1 Matrixin Reprolysin_4 PF13583.1 gi|452205878|ref|YP_007486000.1| - 0.00012 21.6 0.0 0.00014 21.4 0.0 1.1 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Reprolysin_2 PF13574.1 gi|452205878|ref|YP_007486000.1| - 0.00014 21.9 0.0 0.00016 21.7 0.0 1.1 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Reprolysin_3 PF13582.1 gi|452205878|ref|YP_007486000.1| - 0.00015 22.2 0.0 0.00018 22.0 0.0 1.2 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Reprolysin_5 PF13688.1 gi|452205878|ref|YP_007486000.1| - 0.0022 17.9 0.0 0.0025 17.7 0.0 1.2 1 0 0 1 1 1 1 Metallo-peptidase family M12 DUF1025 PF06262.6 gi|452205878|ref|YP_007486000.1| - 0.01 15.6 0.0 0.017 14.8 0.0 1.4 1 0 0 1 1 1 0 Possibl zinc metallo-peptidase Metallopep PF12044.3 gi|452205878|ref|YP_007486000.1| - 0.02 13.3 0.1 0.026 12.9 0.1 1.1 1 0 0 1 1 1 0 Putative peptidase family Peptidase_M66 PF10462.4 gi|452205878|ref|YP_007486000.1| - 0.028 13.3 0.0 0.03 13.1 0.0 1.2 1 0 0 1 1 1 0 Peptidase M66 Peptidase_M43 PF05572.8 gi|452205878|ref|YP_007486000.1| - 0.057 13.0 0.0 0.09 12.3 0.0 1.3 1 0 0 1 1 1 0 Pregnancy-associated plasma protein-A Peptidase_M57 PF12388.3 gi|452205878|ref|YP_007486000.1| - 0.11 11.8 0.0 0.25 10.6 0.0 1.5 2 0 0 2 2 2 0 Dual-action HEIGH metallo-peptidase UPF0146 PF03686.8 gi|452205879|ref|YP_007486001.1| - 2.6e-32 111.3 0.0 3e-32 111.1 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0146) HAD_2 PF13419.1 gi|452205880|ref|YP_007486002.1| - 1.3e-08 35.2 0.4 1.9e-06 28.2 0.3 2.4 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|452205880|ref|YP_007486002.1| - 0.00022 20.8 0.2 0.00088 18.9 0.1 2.1 1 1 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.21 gi|452205880|ref|YP_007486002.1| - 0.015 15.6 0.0 2.3 8.5 0.0 2.2 2 0 0 2 2 2 0 haloacid dehalogenase-like hydrolase F420_oxidored PF03807.12 gi|452205881|ref|YP_007486003.1| - 4.2e-19 68.7 0.0 7.1e-19 68.0 0.0 1.4 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent ApbA PF02558.11 gi|452205881|ref|YP_007486003.1| - 1.2e-06 28.0 0.0 1.6e-06 27.6 0.0 1.2 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_Gly3P_dh_N PF01210.18 gi|452205881|ref|YP_007486003.1| - 2.7e-05 23.9 0.0 3.9e-05 23.4 0.0 1.2 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_10 PF13460.1 gi|452205881|ref|YP_007486003.1| - 0.00059 19.8 1.0 0.0012 18.8 0.7 1.5 1 1 0 1 1 1 1 NADH(P)-binding NAD_binding_2 PF03446.10 gi|452205881|ref|YP_007486003.1| - 0.0013 18.5 0.0 0.0021 17.9 0.0 1.3 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase Semialdhyde_dh PF01118.19 gi|452205881|ref|YP_007486003.1| - 0.0015 18.8 0.1 0.0041 17.4 0.0 1.8 2 0 0 2 2 2 1 Semialdehyde dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.17 gi|452205881|ref|YP_007486003.1| - 0.0083 16.6 0.0 0.013 15.9 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold PDH PF02153.12 gi|452205881|ref|YP_007486003.1| - 0.05 12.4 0.0 0.073 11.9 0.0 1.2 1 0 0 1 1 1 0 Prephenate dehydrogenase adh_short PF00106.20 gi|452205881|ref|YP_007486003.1| - 0.072 12.9 4.1 0.043 13.7 0.7 2.2 2 2 1 3 3 3 0 short chain dehydrogenase DapB_N PF01113.15 gi|452205881|ref|YP_007486003.1| - 0.08 12.8 0.0 0.12 12.3 0.0 1.3 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus B12-binding PF02310.14 gi|452205881|ref|YP_007486003.1| - 0.1 12.4 0.3 2.2 8.1 0.1 2.6 1 1 2 3 3 3 0 B12 binding domain CoA_binding_2 PF13380.1 gi|452205881|ref|YP_007486003.1| - 0.13 12.4 0.0 0.22 11.6 0.0 1.4 1 0 0 1 1 1 0 CoA binding domain PrsW-protease PF13367.1 gi|452205882|ref|YP_007486004.1| - 2.2e-40 137.9 15.2 4e-40 137.0 10.5 1.4 1 0 0 1 1 1 1 Protease prsW family DUF1761 PF08570.5 gi|452205882|ref|YP_007486004.1| - 0.0046 16.9 1.4 0.021 14.8 0.0 2.6 2 1 0 3 3 3 1 Protein of unknown function (DUF1761) DUF402 PF04167.8 gi|452205883|ref|YP_007486005.1| - 8e-19 67.2 0.1 1.4e-18 66.4 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF402) S1 PF00575.18 gi|452205883|ref|YP_007486005.1| - 0.14 12.2 0.7 0.37 10.8 0.5 1.8 1 1 0 1 1 1 0 S1 RNA binding domain Band_7 PF01145.20 gi|452205884|ref|YP_007486006.1| - 4.7e-33 114.5 2.7 4.7e-33 114.5 1.9 1.6 2 0 0 2 2 2 1 SPFH domain / Band 7 family Band_7_1 PF13421.1 gi|452205884|ref|YP_007486006.1| - 0.018 14.5 0.1 0.035 13.6 0.0 1.5 1 0 0 1 1 1 0 SPFH domain-Band 7 family PrgI PF12666.2 gi|452205885|ref|YP_007486007.1| - 0.24 11.5 3.2 0.27 11.3 2.2 1.1 1 0 0 1 1 1 0 PrgI family protein CcoS PF03597.10 gi|452205885|ref|YP_007486007.1| - 0.42 10.1 0.1 0.42 10.1 0.0 2.2 2 1 0 2 2 2 0 Cytochrome oxidase maturation protein cbb3-type MFS_1 PF07690.11 gi|452205886|ref|YP_007486008.1| - 2.2e-13 49.6 61.3 3e-07 29.4 7.2 3.0 1 1 2 3 3 3 3 Major Facilitator Superfamily DHO_dh PF01180.16 gi|452205887|ref|YP_007486009.1| - 1.5e-83 280.1 0.0 1.7e-83 279.9 0.0 1.0 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase NMO PF03060.10 gi|452205887|ref|YP_007486009.1| - 0.0025 17.0 0.1 0.0043 16.2 0.1 1.3 1 0 0 1 1 1 1 Nitronate monooxygenase PcrB PF01884.12 gi|452205887|ref|YP_007486009.1| - 0.16 11.2 1.0 0.48 9.6 0.1 2.1 3 0 0 3 3 3 0 PcrB family SymE_toxin PF08845.5 gi|452205888|ref|YP_007486010.1| - 0.0016 18.2 0.0 0.0016 18.2 0.0 1.1 1 0 0 1 1 1 1 Toxin SymE, type I toxin-antitoxin system Antitoxin-MazE PF04014.13 gi|452205888|ref|YP_007486010.1| - 0.018 14.7 0.2 0.026 14.2 0.1 1.3 1 0 0 1 1 1 0 Antidote-toxin recognition MazE MC1 PF05854.6 gi|452205889|ref|YP_007486011.1| - 5.3e-46 154.5 0.5 6.1e-46 154.3 0.3 1.0 1 0 0 1 1 1 1 Non-histone chromosomal protein MC1 YhhN PF07947.9 gi|452205890|ref|YP_007486012.1| - 0.015 14.7 2.5 0.017 14.5 1.8 1.1 1 0 0 1 1 1 0 YhhN-like protein DUF3180 PF11377.3 gi|452205890|ref|YP_007486012.1| - 0.03 14.1 1.5 0.034 14.0 1.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3180) GtrA PF04138.9 gi|452205890|ref|YP_007486012.1| - 0.12 12.3 3.2 0.14 12.1 2.2 1.1 1 0 0 1 1 1 0 GtrA-like protein Ribonuc_L-PSP PF01042.16 gi|452205891|ref|YP_007486013.1| - 5.6e-38 129.4 0.0 6.2e-38 129.2 0.0 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP DEAD PF00270.24 gi|452205892|ref|YP_007486014.1| - 1e-26 93.4 0.0 2.1e-26 92.3 0.0 1.5 1 0 0 1 1 1 1 DEAD/DEAH box helicase Sec63 PF02889.11 gi|452205892|ref|YP_007486014.1| - 8.2e-13 48.2 0.0 1.1e-12 47.8 0.0 1.1 1 0 0 1 1 1 1 Sec63 Brl domain Helicase_C PF00271.26 gi|452205892|ref|YP_007486014.1| - 2.5e-09 36.8 0.0 6.5e-09 35.5 0.0 1.7 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|452205892|ref|YP_007486014.1| - 5.4e-07 29.6 0.0 1.1e-06 28.6 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit HHH_5 PF14520.1 gi|452205892|ref|YP_007486014.1| - 0.0043 17.1 2.8 0.014 15.5 2.0 2.0 1 0 0 1 1 1 1 Helix-hairpin-helix domain AAA_30 PF13604.1 gi|452205892|ref|YP_007486014.1| - 0.0064 16.0 0.0 0.015 14.9 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|452205892|ref|YP_007486014.1| - 0.033 13.9 4.1 0.038 13.7 0.1 3.2 4 0 0 4 4 4 0 Part of AAA domain T2SE PF00437.15 gi|452205892|ref|YP_007486014.1| - 0.039 12.8 0.0 0.089 11.6 0.0 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein SNF2_N PF00176.18 gi|452205892|ref|YP_007486014.1| - 0.13 11.0 0.0 0.19 10.4 0.0 1.1 1 0 0 1 1 1 0 SNF2 family N-terminal domain Radical_SAM PF04055.16 gi|452205893|ref|YP_007486015.1| - 4.6e-15 56.1 0.0 7.1e-15 55.5 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily AA_kinase PF00696.23 gi|452205895|ref|YP_007486017.1| - 6.9e-49 166.5 2.5 6.9e-49 166.5 1.8 1.4 2 0 0 2 2 2 1 Amino acid kinase family ACT_7 PF13840.1 gi|452205895|ref|YP_007486017.1| - 3e-16 58.7 0.2 5.7e-10 38.5 0.1 2.4 2 0 0 2 2 2 2 ACT domain ACT PF01842.20 gi|452205895|ref|YP_007486017.1| - 5.4e-10 38.5 2.5 0.00011 21.5 0.2 3.0 2 0 0 2 2 2 2 ACT domain ACT_4 PF13291.1 gi|452205895|ref|YP_007486017.1| - 0.0021 18.3 1.6 1.4 9.2 0.1 3.1 1 1 2 3 3 3 2 ACT domain DNA_processg_A PF02481.10 gi|452205896|ref|YP_007486018.1| - 6.6e-07 28.4 2.8 9.5e-05 21.3 1.4 2.0 1 1 1 2 2 2 2 DNA recombination-mediator protein A Lysine_decarbox PF03641.9 gi|452205896|ref|YP_007486018.1| - 0.00066 19.4 0.1 0.0011 18.8 0.1 1.3 1 0 0 1 1 1 1 Possible lysine decarboxylase Nuc_deoxyrib_tr PF05014.10 gi|452205896|ref|YP_007486018.1| - 0.084 12.7 0.0 0.1 12.4 0.0 1.3 1 1 0 1 1 1 0 Nucleoside 2-deoxyribosyltransferase AA_kinase PF00696.23 gi|452205896|ref|YP_007486018.1| - 0.097 12.1 0.1 0.11 12.0 0.0 1.2 1 0 0 1 1 1 0 Amino acid kinase family ABC_membrane PF00664.18 gi|452205897|ref|YP_007486019.1| - 6.1e-38 130.7 0.7 8.1e-38 130.3 0.5 1.1 1 0 0 1 1 1 1 ABC transporter transmembrane region ABC_tran PF00005.22 gi|452205897|ref|YP_007486019.1| - 3.2e-32 111.6 0.0 5.6e-32 110.9 0.0 1.4 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.14 gi|452205897|ref|YP_007486019.1| - 0.00021 20.5 0.0 0.00067 18.9 0.0 1.4 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_25 PF13481.1 gi|452205897|ref|YP_007486019.1| - 0.00031 20.2 1.9 0.0033 16.8 0.0 3.0 3 0 0 3 3 3 1 AAA domain AAA_21 PF13304.1 gi|452205897|ref|YP_007486019.1| - 0.00049 20.1 0.0 0.83 9.5 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|452205897|ref|YP_007486019.1| - 0.0016 18.5 0.2 0.0096 16.0 0.1 2.2 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|452205897|ref|YP_007486019.1| - 0.0017 18.3 0.3 0.0073 16.3 0.2 2.1 1 1 0 1 1 1 1 AAA ATPase domain AAA_17 PF13207.1 gi|452205897|ref|YP_007486019.1| - 0.0019 18.9 0.1 0.0073 17.1 0.1 2.1 1 1 0 1 1 1 1 AAA domain Zeta_toxin PF06414.7 gi|452205897|ref|YP_007486019.1| - 0.0069 15.4 0.4 0.032 13.3 0.0 2.2 3 0 0 3 3 3 1 Zeta toxin AAA_29 PF13555.1 gi|452205897|ref|YP_007486019.1| - 0.012 15.1 0.3 0.028 13.9 0.2 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain NTPase_1 PF03266.10 gi|452205897|ref|YP_007486019.1| - 0.02 14.6 0.0 0.21 11.2 0.0 2.2 2 0 0 2 2 2 0 NTPase AAA_18 PF13238.1 gi|452205897|ref|YP_007486019.1| - 0.03 14.6 0.1 0.19 12.0 0.0 2.3 2 0 0 2 2 2 0 AAA domain ArgK PF03308.11 gi|452205897|ref|YP_007486019.1| - 0.04 12.7 0.1 0.069 11.9 0.1 1.3 1 0 0 1 1 1 0 ArgK protein AAA_24 PF13479.1 gi|452205897|ref|YP_007486019.1| - 0.041 13.4 0.0 0.11 12.1 0.0 1.7 1 1 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|452205897|ref|YP_007486019.1| - 0.049 12.8 0.0 0.096 11.8 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function, DUF258 ABC_ATPase PF09818.4 gi|452205897|ref|YP_007486019.1| - 0.063 11.8 0.4 0.47 8.9 0.1 2.2 2 0 0 2 2 2 0 Predicted ATPase of the ABC class RINT1_TIP1 PF04437.8 gi|452205897|ref|YP_007486019.1| - 0.13 10.7 0.1 0.2 10.1 0.1 1.2 1 0 0 1 1 1 0 RINT-1 / TIP-1 family Pyrophosphatase PF00719.14 gi|452205898|ref|YP_007486020.1| - 3.6e-48 162.9 0.0 4.5e-48 162.6 0.0 1.1 1 0 0 1 1 1 1 Inorganic pyrophosphatase GATase_3 PF07685.9 gi|452205900|ref|YP_007486022.1| - 6.1e-30 103.8 0.2 1e-29 103.1 0.1 1.3 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.18 gi|452205900|ref|YP_007486022.1| - 1.4e-16 60.4 0.1 1.1e-15 57.5 0.0 2.1 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.1 gi|452205900|ref|YP_007486022.1| - 1.9e-11 43.9 0.0 1.3e-06 28.1 0.0 2.2 2 0 0 2 2 2 2 AAA domain DBI_PRT PF02277.12 gi|452205901|ref|YP_007486023.1| - 2e-09 37.0 5.8 3.3e-09 36.2 4.0 1.3 1 0 0 1 1 1 1 Phosphoribosyltransferase TusA PF01206.12 gi|452205901|ref|YP_007486023.1| - 0.16 11.5 0.1 2.3 7.8 0.0 2.2 2 0 0 2 2 2 0 Sulfurtransferase TusA UPF0104 PF03706.8 gi|452205902|ref|YP_007486024.1| - 7.8e-35 120.5 41.3 9.9e-35 120.2 28.7 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0104) Caveolin PF01146.12 gi|452205902|ref|YP_007486024.1| - 2.5 7.6 5.6 21 4.6 0.2 3.0 2 1 0 2 2 2 0 Caveolin Glyco_tranf_2_3 PF13641.1 gi|452205903|ref|YP_007486025.1| - 1.4e-27 96.9 1.5 1.4e-27 96.9 1.0 1.5 2 0 0 2 2 2 1 Glycosyltransferase like family 2 Glycos_transf_2 PF00535.21 gi|452205903|ref|YP_007486025.1| - 5.8e-16 58.6 0.0 8.8e-16 58.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_transf_21 PF13506.1 gi|452205903|ref|YP_007486025.1| - 2.1e-10 40.1 0.0 3.3e-10 39.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_trans_2_3 PF13632.1 gi|452205903|ref|YP_007486025.1| - 5.8e-10 39.2 1.2 5.8e-10 39.2 0.8 1.5 2 0 0 2 2 2 1 Glycosyl transferase family group 2 Glyco_tranf_2_2 PF10111.4 gi|452205903|ref|YP_007486025.1| - 0.01 14.9 0.0 1 8.4 0.0 2.0 2 0 0 2 2 2 0 Glycosyltransferase like family 2 Sulfatase PF00884.18 gi|452205904|ref|YP_007486026.1| - 0.0022 17.2 0.2 0.0069 15.6 0.1 1.8 1 1 0 1 1 1 1 Sulfatase TP_methylase PF00590.15 gi|452205905|ref|YP_007486027.1| - 9.7e-34 116.9 0.2 1.1e-33 116.6 0.2 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Dynactin PF12455.3 gi|452205905|ref|YP_007486027.1| - 0.024 13.5 0.0 0.043 12.7 0.0 1.3 1 0 0 1 1 1 0 Dynein associated protein CbiC PF02570.10 gi|452205906|ref|YP_007486028.1| - 1.1e-48 165.3 1.7 1.3e-48 165.0 1.2 1.0 1 0 0 1 1 1 1 Precorrin-8X methylmutase CobN-Mg_chel PF02514.11 gi|452205907|ref|YP_007486029.1| - 0 1222.7 0.0 0 1222.1 0.0 1.3 1 0 0 1 1 1 1 CobN/Magnesium Chelatase LexA_DNA_bind PF01726.11 gi|452205907|ref|YP_007486029.1| - 0.13 11.8 0.0 0.36 10.4 0.0 1.7 1 0 0 1 1 1 0 LexA DNA binding domain VWA_2 PF13519.1 gi|452205908|ref|YP_007486030.1| - 4.7e-20 72.3 2.7 4.7e-20 72.3 1.9 2.0 2 0 0 2 2 2 1 von Willebrand factor type A domain Mg_chelatase PF01078.16 gi|452205908|ref|YP_007486030.1| - 5.5e-13 48.5 0.1 7.7e-08 31.7 0.0 2.3 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI VWA PF00092.23 gi|452205908|ref|YP_007486030.1| - 2.2e-08 34.0 0.0 4e-08 33.1 0.0 1.4 1 0 0 1 1 1 1 von Willebrand factor type A domain AAA_5 PF07728.9 gi|452205908|ref|YP_007486030.1| - 2.2e-08 33.9 0.0 3.4e-06 26.8 0.0 2.4 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) MCM PF00493.18 gi|452205908|ref|YP_007486030.1| - 2e-05 23.5 0.3 0.00016 20.6 0.0 2.2 3 0 0 3 3 3 1 MCM2/3/5 family VWA_3 PF13768.1 gi|452205908|ref|YP_007486030.1| - 7e-05 22.5 0.6 0.00014 21.5 0.4 1.5 1 0 0 1 1 1 1 von Willebrand factor type A domain Sigma54_activat PF00158.21 gi|452205908|ref|YP_007486030.1| - 0.0037 16.7 0.0 0.099 12.1 0.0 2.2 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_22 PF13401.1 gi|452205908|ref|YP_007486030.1| - 0.015 15.3 0.0 0.26 11.4 0.0 2.8 2 1 0 2 2 2 0 AAA domain Daxx PF03344.10 gi|452205908|ref|YP_007486030.1| - 0.18 10.2 8.7 0.28 9.6 6.0 1.3 1 0 0 1 1 1 0 Daxx Family CbtB PF09489.5 gi|452205909|ref|YP_007486031.1| - 5.8e-15 54.9 1.8 6.8e-15 54.7 1.3 1.1 1 0 0 1 1 1 1 Probable cobalt transporter subunit (CbtB) CbtA PF09490.5 gi|452205910|ref|YP_007486032.1| - 8.2e-06 25.2 21.8 1.5e-05 24.4 15.1 1.5 1 1 0 1 1 1 1 Probable cobalt transporter subunit (CbtA) DUF3099 PF11298.3 gi|452205910|ref|YP_007486032.1| - 0.0012 18.5 4.4 0.0012 18.5 3.0 2.0 3 0 0 3 3 3 1 Protein of unknown function (DUF3099) 2Fe-2S_thioredx PF01257.14 gi|452205911|ref|YP_007486033.1| - 0.0094 15.5 0.1 0.012 15.2 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin-like [2Fe-2S] ferredoxin Suc_Fer-like PF06999.7 gi|452205911|ref|YP_007486033.1| - 0.15 12.0 0.1 0.47 10.4 0.1 1.8 1 1 0 1 1 1 0 Sucrase/ferredoxin-like RtcB PF01139.12 gi|452205913|ref|YP_007486035.1| - 2.4e-99 333.1 0.0 3.9e-99 332.4 0.0 1.3 1 1 0 1 1 1 1 tRNA-splicing ligase RtcB Aminotran_1_2 PF00155.16 gi|452205914|ref|YP_007486036.1| - 2e-55 188.2 0.0 2.4e-55 187.9 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|452205914|ref|YP_007486036.1| - 2e-06 27.1 0.1 4.9e-06 25.8 0.1 1.6 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.16 gi|452205914|ref|YP_007486036.1| - 3.9e-06 26.2 0.0 6.5e-06 25.4 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.14 gi|452205914|ref|YP_007486036.1| - 4.4e-05 22.3 0.0 7.1e-05 21.7 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V Alliinase_C PF04864.8 gi|452205914|ref|YP_007486036.1| - 0.0028 16.3 0.0 0.0043 15.7 0.0 1.2 1 0 0 1 1 1 1 Allinase Aminotran_3 PF00202.16 gi|452205914|ref|YP_007486036.1| - 0.012 14.4 0.0 0.058 12.2 0.0 1.8 2 0 0 2 2 2 0 Aminotransferase class-III Cys_Met_Meta_PP PF01053.15 gi|452205914|ref|YP_007486036.1| - 0.05 11.8 0.0 0.067 11.4 0.0 1.1 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme DUF2795 PF11387.3 gi|452205914|ref|YP_007486036.1| - 0.091 12.6 0.2 1 9.3 0.0 2.6 3 0 0 3 3 3 0 Protein of unknown function (DUF2795) Acetyltransf_4 PF13420.1 gi|452205915|ref|YP_007486037.1| - 1.6e-14 54.1 0.0 2.2e-14 53.6 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|452205915|ref|YP_007486037.1| - 1.1e-11 44.5 0.0 3.1e-11 43.1 0.0 1.8 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|452205915|ref|YP_007486037.1| - 3.2e-09 36.9 0.0 5.4e-09 36.1 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|452205915|ref|YP_007486037.1| - 4.9e-07 29.8 0.0 9.6e-07 28.8 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|452205915|ref|YP_007486037.1| - 5.4e-06 26.6 0.0 9.5e-06 25.8 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|452205915|ref|YP_007486037.1| - 1.4e-05 24.9 0.0 3.4e-05 23.6 0.0 1.6 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_6 PF13480.1 gi|452205915|ref|YP_007486037.1| - 0.00085 19.3 2.4 0.0068 16.3 0.2 2.7 1 1 1 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|452205915|ref|YP_007486037.1| - 0.0036 17.1 0.0 0.011 15.6 0.0 1.8 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|452205915|ref|YP_007486037.1| - 0.0081 16.0 0.0 0.014 15.2 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain HTH_27 PF13463.1 gi|452205915|ref|YP_007486037.1| - 0.061 13.6 0.0 0.8 10.0 0.0 2.5 2 0 0 2 2 2 0 Winged helix DNA-binding domain Flu_C_NS2 PF03555.9 gi|452205915|ref|YP_007486037.1| - 0.11 12.4 0.0 0.27 11.1 0.0 1.7 1 0 0 1 1 1 0 Influenza C non-structural protein (NS2) FR47 PF08445.5 gi|452205915|ref|YP_007486037.1| - 0.11 12.2 0.0 0.24 11.1 0.0 1.5 1 0 0 1 1 1 0 FR47-like protein Radical_SAM PF04055.16 gi|452205916|ref|YP_007486038.1| - 1.8e-06 28.2 1.2 7.7e-05 22.9 0.6 2.4 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|452205916|ref|YP_007486038.1| - 5.7e-05 23.2 0.0 0.00014 22.0 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|452205916|ref|YP_007486038.1| - 7.5e-05 22.7 0.1 0.00014 21.8 0.1 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain PPR_3 PF13812.1 gi|452205916|ref|YP_007486038.1| - 0.11 12.7 0.1 0.74 10.2 0.0 2.4 2 0 0 2 2 2 0 Pentatricopeptide repeat domain DUF302 PF03625.9 gi|452205917|ref|YP_007486039.1| - 3.2e-17 61.8 0.0 5.9e-17 60.9 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function DUF302 DZR PF12773.2 gi|452205919|ref|YP_007486041.1| - 0.002 17.9 1.6 0.12 12.2 0.1 2.4 2 0 0 2 2 2 1 Double zinc ribbon HypA PF01155.14 gi|452205919|ref|YP_007486041.1| - 0.0059 16.2 1.0 0.55 9.9 0.1 2.1 2 0 0 2 2 2 1 Hydrogenase expression/synthesis hypA family zf-ribbon_3 PF13248.1 gi|452205919|ref|YP_007486041.1| - 0.026 13.7 3.3 17 4.8 0.1 3.4 3 0 0 3 3 3 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|452205919|ref|YP_007486041.1| - 0.13 11.5 1.5 1.6 8.0 0.2 2.5 2 0 0 2 2 2 0 TFIIB zinc-binding zinc_ribbon_2 PF13240.1 gi|452205919|ref|YP_007486041.1| - 0.59 9.6 3.4 39 3.9 0.0 2.9 2 1 1 3 3 3 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|452205919|ref|YP_007486041.1| - 1.1 9.2 6.5 12 5.9 1.6 2.9 2 1 1 3 3 3 0 Zinc ribbon domain DNA_RNApol_7kD PF03604.8 gi|452205919|ref|YP_007486041.1| - 1.5 8.3 4.5 23 4.5 0.2 2.9 3 0 0 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit zinc_ribbon_5 PF13719.1 gi|452205919|ref|YP_007486041.1| - 2.3 7.8 4.4 27 4.4 0.1 3.1 3 0 0 3 3 3 0 zinc-ribbon domain Lar_restr_allev PF14354.1 gi|452205919|ref|YP_007486041.1| - 3 8.2 5.8 42 4.5 0.2 3.2 2 1 0 2 2 2 0 Restriction alleviation protein Lar UPF0547 PF10571.4 gi|452205919|ref|YP_007486041.1| - 5.5 6.7 8.6 47 3.8 0.1 3.5 3 0 0 3 3 3 0 Uncharacterised protein family UPF0547 O-antigen_lig PF13425.1 gi|452205920|ref|YP_007486042.1| - 0.081 12.9 0.2 0.088 12.7 0.1 1.1 1 0 0 1 1 1 0 O-antigen ligase like membrane protein DUF3995 PF13160.1 gi|452205920|ref|YP_007486042.1| - 0.088 12.8 2.8 0.1 12.6 1.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3995) Neurensin PF14927.1 gi|452205920|ref|YP_007486042.1| - 0.1 11.9 1.0 5.1 6.4 0.0 2.0 2 0 0 2 2 2 0 Neurensin 7TM-7TMR_HD PF07698.6 gi|452205920|ref|YP_007486042.1| - 0.13 11.7 0.8 0.14 11.6 0.5 1.0 1 0 0 1 1 1 0 7TM receptor with intracellular HD hydrolase DUF2892 PF11127.3 gi|452205920|ref|YP_007486042.1| - 1.5 8.7 7.7 2 8.3 5.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2892) DUF137 PF02006.11 gi|452205921|ref|YP_007486043.1| - 1.3e-71 239.6 2.4 1.6e-71 239.3 1.6 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF137 Phage_GPD PF05954.6 gi|452205921|ref|YP_007486043.1| - 0.0038 16.4 0.2 0.0062 15.7 0.1 1.3 1 0 0 1 1 1 1 Phage late control gene D protein (GPD) Mut7-C PF01927.11 gi|452205923|ref|YP_007486045.1| - 1.8e-37 128.5 0.0 2e-37 128.3 0.0 1.0 1 0 0 1 1 1 1 Mut7-C RNAse domain PHD_2 PF13831.1 gi|452205923|ref|YP_007486045.1| - 1.9 7.9 5.3 13 5.2 1.1 2.2 2 0 0 2 2 2 0 PHD-finger DNA_pol_B_thumb PF14791.1 gi|452205924|ref|YP_007486046.1| - 1.5e-23 82.2 0.0 4e-23 80.8 0.0 1.8 2 0 0 2 2 2 1 DNA polymerase beta thumb HHH_8 PF14716.1 gi|452205924|ref|YP_007486046.1| - 1.2e-14 54.2 6.1 6.9e-13 48.5 0.7 3.5 2 1 1 3 3 3 1 Helix-hairpin-helix domain PHP PF02811.14 gi|452205924|ref|YP_007486046.1| - 1.5e-11 44.3 2.9 7e-11 42.2 0.3 2.8 1 1 1 2 2 2 1 PHP domain HHH_5 PF14520.1 gi|452205924|ref|YP_007486046.1| - 9.3e-10 38.5 1.0 9.3e-10 38.5 0.7 4.1 4 0 0 4 4 4 2 Helix-hairpin-helix domain HHH_2 PF12826.2 gi|452205924|ref|YP_007486046.1| - 4.5e-06 26.4 3.5 0.0011 18.7 0.2 3.8 2 1 2 4 4 4 2 Helix-hairpin-helix motif DNA_pol_lambd_f PF10391.4 gi|452205924|ref|YP_007486046.1| - 0.00053 19.4 0.0 0.0018 17.7 0.0 1.9 2 0 0 2 2 2 1 Fingers domain of DNA polymerase lambda HHH PF00633.18 gi|452205924|ref|YP_007486046.1| - 0.0025 17.3 1.5 0.055 13.2 0.1 3.2 2 0 0 2 2 2 1 Helix-hairpin-helix motif DNA_pol_B_palm PF14792.1 gi|452205924|ref|YP_007486046.1| - 0.011 15.7 0.0 0.025 14.6 0.0 1.5 1 0 0 1 1 1 0 DNA polymerase beta palm ThiF PF00899.16 gi|452205926|ref|YP_007486048.1| - 2.8e-42 143.7 0.0 4e-42 143.2 0.0 1.2 1 0 0 1 1 1 1 ThiF family MoeZ_MoeB PF05237.8 gi|452205926|ref|YP_007486048.1| - 7.4e-35 118.4 0.1 1.2e-34 117.7 0.1 1.3 1 0 0 1 1 1 1 MoeZ/MoeB domain Saccharop_dh PF03435.13 gi|452205926|ref|YP_007486048.1| - 0.0014 17.6 0.1 0.0021 17.1 0.0 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase Shikimate_DH PF01488.15 gi|452205926|ref|YP_007486048.1| - 0.04 14.0 0.1 0.096 12.7 0.1 1.7 1 1 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase Copper-bind PF00127.15 gi|452205927|ref|YP_007486049.1| - 2.7e-13 49.9 0.0 7.8e-13 48.5 0.0 1.7 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family SelR PF01641.13 gi|452205928|ref|YP_007486050.1| - 1.4e-48 163.7 0.0 1.5e-48 163.5 0.0 1.0 1 0 0 1 1 1 1 SelR domain Yippee-Mis18 PF03226.9 gi|452205928|ref|YP_007486050.1| - 0.003 17.5 0.0 0.0086 16.0 0.0 1.7 1 1 0 1 1 1 1 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly DUF2296 PF10058.4 gi|452205928|ref|YP_007486050.1| - 0.0087 15.7 0.1 0.54 10.0 0.0 2.2 2 0 0 2 2 2 1 Predicted integral membrane metal-binding protein (DUF2296) DUF2437 PF10370.4 gi|452205928|ref|YP_007486050.1| - 0.055 13.8 0.0 0.13 12.6 0.0 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF2437) TF_Zn_Ribbon PF08271.7 gi|452205928|ref|YP_007486050.1| - 0.064 12.5 0.7 11 5.3 0.1 2.9 2 0 0 2 2 2 0 TFIIB zinc-binding AA_permease_2 PF13520.1 gi|452205930|ref|YP_007486052.1| - 1.3e-46 159.0 33.6 1.7e-46 158.6 23.3 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|452205930|ref|YP_007486052.1| - 2.4e-45 154.7 33.0 3.1e-45 154.4 22.9 1.1 1 0 0 1 1 1 1 Amino acid permease Usp PF00582.21 gi|452205930|ref|YP_007486052.1| - 3.9e-20 72.4 5.9 1.9e-09 37.8 0.1 3.1 2 1 0 2 2 2 2 Universal stress protein family AIRC PF00731.15 gi|452205930|ref|YP_007486052.1| - 0.0093 15.2 0.0 0.028 13.6 0.0 1.8 1 0 0 1 1 1 1 AIR carboxylase AA_permease_C PF13906.1 gi|452205930|ref|YP_007486052.1| - 1.3 8.9 7.3 0.37 10.6 2.0 2.5 2 0 0 2 2 2 0 C-terminus of AA_permease Usp PF00582.21 gi|452205931|ref|YP_007486053.1| - 4.2e-11 43.1 2.1 5e-11 42.9 1.5 1.0 1 0 0 1 1 1 1 Universal stress protein family DUF1350 PF07082.6 gi|452205931|ref|YP_007486053.1| - 0.078 12.0 0.0 0.091 11.8 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1350) PMSR PF01625.16 gi|452205932|ref|YP_007486054.1| - 9.6e-63 210.7 0.0 1.1e-62 210.5 0.0 1.0 1 0 0 1 1 1 1 Peptide methionine sulfoxide reductase Usp PF00582.21 gi|452205933|ref|YP_007486055.1| - 9.2e-37 126.3 0.7 1e-36 126.1 0.5 1.0 1 0 0 1 1 1 1 Universal stress protein family TPPK_C PF12555.3 gi|452205934|ref|YP_007486056.1| - 2.8 7.7 9.0 0.51 10.1 2.6 2.2 1 1 1 2 2 2 0 Thiamine pyrophosphokinase C terminal Epimerase PF01370.16 gi|452205935|ref|YP_007486057.1| - 2.1e-22 79.7 0.0 2.7e-22 79.3 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|452205935|ref|YP_007486057.1| - 2.6e-14 52.6 0.0 9.1e-14 50.8 0.0 1.9 2 1 0 2 2 2 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_10 PF13460.1 gi|452205935|ref|YP_007486057.1| - 4.3e-12 46.4 0.0 5.5e-12 46.0 0.0 1.1 1 0 0 1 1 1 1 NADH(P)-binding NAD_binding_4 PF07993.7 gi|452205935|ref|YP_007486057.1| - 5.9e-12 45.0 0.0 1.6e-11 43.5 0.0 1.6 2 0 0 2 2 2 1 Male sterility protein Polysacc_synt_2 PF02719.10 gi|452205935|ref|YP_007486057.1| - 4.3e-10 38.9 0.0 1.3e-06 27.5 0.0 3.0 3 0 0 3 3 3 2 Polysaccharide biosynthesis protein adh_short PF00106.20 gi|452205935|ref|YP_007486057.1| - 0.00015 21.7 1.3 0.025 14.4 0.9 2.5 1 1 0 1 1 1 1 short chain dehydrogenase RmlD_sub_bind PF04321.12 gi|452205935|ref|YP_007486057.1| - 0.00034 19.5 0.0 0.00088 18.2 0.0 1.5 1 1 0 1 1 1 1 RmlD substrate binding domain NmrA PF05368.8 gi|452205935|ref|YP_007486057.1| - 0.0024 17.1 0.0 0.005 16.1 0.0 1.4 2 0 0 2 2 2 1 NmrA-like family KR PF08659.5 gi|452205935|ref|YP_007486057.1| - 0.035 13.7 0.4 2.3 7.8 0.0 2.4 1 1 0 2 2 2 0 KR domain Desulfoferrod_N PF06397.7 gi|452205936|ref|YP_007486058.1| - 0.0016 17.7 2.9 0.0054 16.0 0.4 2.1 2 0 0 2 2 2 1 Desulfoferrodoxin, N-terminal domain RRN7 PF11781.3 gi|452205936|ref|YP_007486058.1| - 0.003 17.0 1.0 0.37 10.3 0.1 2.1 2 0 0 2 2 2 2 RNA polymerase I-specific transcription initiation factor Rrn7 DUF678 PF05077.7 gi|452205936|ref|YP_007486058.1| - 0.029 14.3 0.0 0.036 14.0 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF678) DZR PF12773.2 gi|452205936|ref|YP_007486058.1| - 0.03 14.1 0.0 0.047 13.5 0.0 1.3 1 1 0 1 1 1 0 Double zinc ribbon C1_2 PF03107.11 gi|452205936|ref|YP_007486058.1| - 0.083 13.0 1.6 3.5 7.8 0.1 2.2 2 0 0 2 2 2 0 C1 domain C1_3 PF07649.7 gi|452205936|ref|YP_007486058.1| - 0.11 12.5 1.4 9.5 6.3 0.1 2.2 2 0 0 2 2 2 0 C1-like domain Prok-RING_1 PF14446.1 gi|452205936|ref|YP_007486058.1| - 0.16 11.7 1.6 3.7 7.3 0.2 2.1 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 TF_Zn_Ribbon PF08271.7 gi|452205936|ref|YP_007486058.1| - 0.19 11.0 2.4 0.63 9.4 0.1 2.1 2 0 0 2 2 2 0 TFIIB zinc-binding DUF3133 PF11331.3 gi|452205936|ref|YP_007486058.1| - 0.26 10.8 1.1 0.77 9.3 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3133) ZZ PF00569.12 gi|452205936|ref|YP_007486058.1| - 0.39 10.2 2.2 6.1 6.4 0.0 2.1 2 0 0 2 2 2 0 Zinc finger, ZZ type zf-C2H2_6 PF13912.1 gi|452205936|ref|YP_007486058.1| - 0.43 10.5 2.9 2.1 8.3 0.2 2.1 2 0 0 2 2 2 0 C2H2-type zinc finger zf-met PF12874.2 gi|452205936|ref|YP_007486058.1| - 1.3 9.3 3.8 3 8.1 0.2 2.1 2 0 0 2 2 2 0 Zinc-finger of C2H2 type MacB_PCD PF12704.2 gi|452205937|ref|YP_007486059.1| - 2.5e-26 92.6 1.8 2.5e-26 92.6 1.3 2.0 2 0 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.16 gi|452205937|ref|YP_007486059.1| - 2.6e-18 65.9 10.0 2.6e-18 65.9 6.9 2.1 2 0 0 2 2 2 1 FtsX-like permease family DUF4131 PF13567.1 gi|452205937|ref|YP_007486059.1| - 0.019 14.3 7.2 0.13 11.6 0.0 2.7 2 1 1 3 3 3 0 Domain of unknown function (DUF4131) YjgP_YjgQ PF03739.9 gi|452205937|ref|YP_007486059.1| - 0.34 9.6 4.7 0.87 8.2 3.2 1.7 1 0 0 1 1 1 0 Predicted permease YjgP/YjgQ family DUF485 PF04341.7 gi|452205937|ref|YP_007486059.1| - 2.5 7.8 6.1 5.4 6.7 0.1 2.7 3 0 0 3 3 3 0 Protein of unknown function, DUF485 ABC_tran PF00005.22 gi|452205938|ref|YP_007486060.1| - 2.6e-34 118.4 0.0 3.7e-34 117.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|452205938|ref|YP_007486060.1| - 7.4e-12 45.8 0.2 2.6e-06 27.6 0.0 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|452205938|ref|YP_007486060.1| - 9.2e-06 25.0 0.1 0.046 12.9 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|452205938|ref|YP_007486060.1| - 3e-05 24.1 0.5 0.00011 22.3 0.4 1.8 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|452205938|ref|YP_007486060.1| - 3.2e-05 23.3 0.1 5.9e-05 22.5 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|452205938|ref|YP_007486060.1| - 0.00059 19.8 0.2 0.0012 18.8 0.1 1.7 1 1 0 1 1 1 1 AAA ATPase domain DUF258 PF03193.11 gi|452205938|ref|YP_007486060.1| - 0.0019 17.4 0.0 0.0036 16.4 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_23 PF13476.1 gi|452205938|ref|YP_007486060.1| - 0.0027 18.0 0.1 0.0064 16.8 0.0 1.5 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|452205938|ref|YP_007486060.1| - 0.003 16.9 0.1 0.26 10.6 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_10 PF12846.2 gi|452205938|ref|YP_007486060.1| - 0.003 17.0 0.1 0.014 14.8 0.0 1.9 2 0 0 2 2 2 1 AAA-like domain AAA_17 PF13207.1 gi|452205938|ref|YP_007486060.1| - 0.0079 17.0 1.3 0.015 16.1 0.9 1.9 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.1 gi|452205938|ref|YP_007486060.1| - 0.018 14.6 0.5 0.19 11.3 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.1 gi|452205938|ref|YP_007486060.1| - 0.02 15.1 0.1 0.094 13.0 0.0 2.0 2 0 0 2 2 2 0 AAA domain SbcCD_C PF13558.1 gi|452205938|ref|YP_007486060.1| - 0.043 13.7 0.1 0.48 10.3 0.1 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA PF00004.24 gi|452205938|ref|YP_007486060.1| - 0.043 14.0 0.2 7.2 6.8 0.0 2.3 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_15 PF13175.1 gi|452205938|ref|YP_007486060.1| - 0.048 12.7 0.0 2.3 7.1 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain AAA_14 PF13173.1 gi|452205938|ref|YP_007486060.1| - 0.066 13.1 0.0 0.14 12.0 0.0 1.6 2 0 0 2 2 2 0 AAA domain IstB_IS21 PF01695.12 gi|452205938|ref|YP_007486060.1| - 0.074 12.4 0.1 0.16 11.3 0.0 1.5 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_33 PF13671.1 gi|452205938|ref|YP_007486060.1| - 0.1 12.5 1.5 0.27 11.1 1.1 2.1 1 1 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.18 gi|452205938|ref|YP_007486060.1| - 0.1 12.5 1.0 0.27 11.1 0.7 1.9 1 1 0 1 1 1 0 50S ribosome-binding GTPase FtsK_SpoIIIE PF01580.13 gi|452205938|ref|YP_007486060.1| - 0.1 12.0 0.0 0.22 10.9 0.0 1.5 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_19 PF13245.1 gi|452205938|ref|YP_007486060.1| - 0.11 12.2 0.0 0.27 11.0 0.0 1.7 1 0 0 1 1 1 0 Part of AAA domain CARDB PF07705.6 gi|452205939|ref|YP_007486061.1| - 7.4e-05 22.7 4.3 0.22 11.6 0.2 3.1 3 0 0 3 3 3 2 CARDB MaoC_dehydrat_N PF13452.1 gi|452205939|ref|YP_007486061.1| - 0.027 14.2 1.0 0.55 10.0 0.1 2.4 2 0 0 2 2 2 0 N-terminal half of MaoC dehydratase DUF309 PF03745.9 gi|452205940|ref|YP_007486062.1| - 3.9e-16 58.2 0.2 6.3e-16 57.5 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF309) Acetyltransf_10 PF13673.1 gi|452205941|ref|YP_007486063.1| - 2.7e-09 37.1 0.0 3e-09 36.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|452205941|ref|YP_007486063.1| - 3.2e-08 33.6 0.0 5.5e-08 32.8 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|452205941|ref|YP_007486063.1| - 2.3e-07 30.7 0.1 5.9e-07 29.4 0.0 1.7 1 1 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_9 PF13527.1 gi|452205941|ref|YP_007486063.1| - 0.0003 20.6 0.0 0.015 15.1 0.0 2.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|452205941|ref|YP_007486063.1| - 0.01 15.6 0.0 0.017 14.9 0.0 1.3 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase FR47 PF08445.5 gi|452205941|ref|YP_007486063.1| - 0.034 13.9 0.1 0.63 9.8 0.1 2.1 2 0 0 2 2 2 0 FR47-like protein ThiS PF02597.15 gi|452205942|ref|YP_007486064.1| - 0.12 12.7 0.2 0.15 12.5 0.1 1.1 1 0 0 1 1 1 0 ThiS family Rep_fac_C PF08542.6 gi|452205944|ref|YP_007486066.1| - 2.7e-21 75.3 0.0 5.8e-21 74.2 0.0 1.6 1 0 0 1 1 1 1 Replication factor C C-terminal domain DNA_pol3_delta2 PF13177.1 gi|452205944|ref|YP_007486066.1| - 6.1e-17 61.7 0.0 1.1e-14 54.3 0.0 2.2 1 1 0 1 1 1 1 DNA polymerase III, delta subunit AAA PF00004.24 gi|452205944|ref|YP_007486066.1| - 7e-17 61.8 0.0 5.5e-16 58.9 0.0 2.0 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.10 gi|452205944|ref|YP_007486066.1| - 5e-09 35.3 0.0 1.6e-06 27.1 0.0 2.1 2 0 0 2 2 2 2 Rad17 cell cycle checkpoint protein RuvB_N PF05496.7 gi|452205944|ref|YP_007486066.1| - 1.3e-07 30.8 0.1 1.5e-06 27.4 0.0 2.4 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_16 PF13191.1 gi|452205944|ref|YP_007486066.1| - 1.2e-06 28.6 0.4 0.0087 16.0 0.0 2.8 1 1 2 3 3 3 2 AAA ATPase domain AAA_14 PF13173.1 gi|452205944|ref|YP_007486066.1| - 1.9e-06 27.7 0.0 5.1e-06 26.4 0.0 1.7 1 1 1 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|452205944|ref|YP_007486066.1| - 5.8e-06 26.4 0.1 0.058 13.5 0.0 2.6 1 1 1 2 2 2 2 AAA domain TIP49 PF06068.8 gi|452205944|ref|YP_007486066.1| - 3.3e-05 22.8 0.0 0.026 13.2 0.0 2.9 1 1 0 2 2 2 1 TIP49 C-terminus DNA_pol3_delta PF06144.8 gi|452205944|ref|YP_007486066.1| - 4.1e-05 23.1 0.0 7.4e-05 22.3 0.0 1.3 1 0 0 1 1 1 1 DNA polymerase III, delta subunit AAA_3 PF07726.6 gi|452205944|ref|YP_007486066.1| - 0.0032 17.0 0.0 0.012 15.2 0.0 1.8 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) T2SE PF00437.15 gi|452205944|ref|YP_007486066.1| - 0.0034 16.3 0.0 0.0063 15.4 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_19 PF13245.1 gi|452205944|ref|YP_007486066.1| - 0.0035 17.0 0.0 0.0094 15.6 0.0 1.8 1 0 0 1 1 1 1 Part of AAA domain Sigma54_activ_2 PF14532.1 gi|452205944|ref|YP_007486066.1| - 0.0045 17.0 0.0 0.011 15.8 0.0 1.6 1 1 0 1 1 1 1 Sigma-54 interaction domain Mg_chelatase PF01078.16 gi|452205944|ref|YP_007486066.1| - 0.0049 16.0 0.0 1.3 8.1 0.0 2.3 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_17 PF13207.1 gi|452205944|ref|YP_007486066.1| - 0.0058 17.4 0.1 0.018 15.8 0.0 2.0 1 1 1 2 2 2 1 AAA domain PhoH PF02562.11 gi|452205944|ref|YP_007486066.1| - 0.007 15.6 0.0 0.18 10.9 0.0 2.4 2 0 0 2 2 2 1 PhoH-like protein IstB_IS21 PF01695.12 gi|452205944|ref|YP_007486066.1| - 0.0084 15.5 0.0 0.021 14.2 0.0 1.6 2 0 0 2 2 1 1 IstB-like ATP binding protein Sigma54_activat PF00158.21 gi|452205944|ref|YP_007486066.1| - 0.0095 15.4 0.0 0.36 10.2 0.0 2.4 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA_25 PF13481.1 gi|452205944|ref|YP_007486066.1| - 0.016 14.6 0.0 0.04 13.3 0.0 1.7 1 1 0 1 1 1 0 AAA domain ResIII PF04851.10 gi|452205944|ref|YP_007486066.1| - 0.016 15.0 0.0 0.045 13.5 0.0 1.8 1 1 0 1 1 1 0 Type III restriction enzyme, res subunit SNF2_N PF00176.18 gi|452205944|ref|YP_007486066.1| - 0.037 12.8 0.0 0.8 8.4 0.0 2.0 1 1 0 2 2 2 0 SNF2 family N-terminal domain AAA_11 PF13086.1 gi|452205944|ref|YP_007486066.1| - 0.049 13.1 0.0 0.077 12.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|452205944|ref|YP_007486066.1| - 0.06 13.0 0.0 0.46 10.2 0.0 2.3 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) FtsK_SpoIIIE PF01580.13 gi|452205944|ref|YP_007486066.1| - 0.082 12.3 0.0 0.18 11.2 0.0 1.5 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_18 PF13238.1 gi|452205944|ref|YP_007486066.1| - 0.082 13.2 0.0 0.15 12.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain DEAD PF00270.24 gi|452205944|ref|YP_007486066.1| - 0.1 12.0 0.2 6.3 6.2 0.0 2.4 1 1 0 2 2 2 0 DEAD/DEAH box helicase Viral_helicase1 PF01443.13 gi|452205944|ref|YP_007486066.1| - 0.11 11.9 0.0 0.17 11.4 0.0 1.2 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase PEPCK_ATP PF01293.15 gi|452205944|ref|YP_007486066.1| - 0.14 10.6 0.0 0.22 9.9 0.0 1.2 1 0 0 1 1 1 0 Phosphoenolpyruvate carboxykinase HasA PF06438.7 gi|452205944|ref|YP_007486066.1| - 0.17 11.2 2.0 9.2 5.6 0.0 2.4 1 1 1 2 2 2 0 Heme-binding protein A (HasA) Helicase_C_2 PF13307.1 gi|452205945|ref|YP_007486067.1| - 1.8e-22 80.0 0.0 3.1e-22 79.2 0.0 1.4 1 0 0 1 1 1 1 Helicase C-terminal domain ResIII PF04851.10 gi|452205945|ref|YP_007486067.1| - 1.4e-06 28.2 0.0 0.0011 18.8 0.0 2.5 3 0 0 3 3 3 2 Type III restriction enzyme, res subunit DEAD_2 PF06733.10 gi|452205945|ref|YP_007486067.1| - 1.9e-06 27.3 0.0 3e-06 26.7 0.0 1.2 1 0 0 1 1 1 1 DEAD_2 AAA_19 PF13245.1 gi|452205945|ref|YP_007486067.1| - 8.4e-06 25.4 0.8 7.5e-05 22.4 0.0 2.5 2 0 0 2 2 2 1 Part of AAA domain AAA_16 PF13191.1 gi|452205945|ref|YP_007486067.1| - 0.00047 20.1 0.4 0.0046 16.9 0.0 2.5 2 0 0 2 2 2 1 AAA ATPase domain DEAD PF00270.24 gi|452205945|ref|YP_007486067.1| - 0.0005 19.5 0.0 0.15 11.5 0.0 2.5 2 0 0 2 2 2 2 DEAD/DEAH box helicase AAA_30 PF13604.1 gi|452205945|ref|YP_007486067.1| - 0.0029 17.2 0.0 0.59 9.6 0.0 2.6 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|452205945|ref|YP_007486067.1| - 0.0052 16.9 0.0 0.073 13.2 0.0 2.6 2 1 0 2 2 2 1 AAA domain PhoH PF02562.11 gi|452205945|ref|YP_007486067.1| - 0.064 12.4 0.0 0.13 11.5 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein AAA_10 PF12846.2 gi|452205945|ref|YP_007486067.1| - 0.085 12.2 0.0 15 4.9 0.0 2.4 2 0 0 2 2 2 0 AAA-like domain MFS_1 PF07690.11 gi|452205946|ref|YP_007486068.1| - 7.2e-34 117.0 65.3 2.1e-23 82.5 21.8 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.2 gi|452205946|ref|YP_007486068.1| - 7e-05 22.5 0.3 0.06 13.1 0.0 3.5 2 1 1 3 3 3 2 MFS_1 like family PTR2 PF00854.16 gi|452205946|ref|YP_007486068.1| - 1.7 7.3 6.9 2.9 6.5 4.8 1.4 1 0 0 1 1 1 0 POT family Aminotran_5 PF00266.14 gi|452205947|ref|YP_007486069.1| - 1.3e-26 93.2 0.0 1.6e-26 92.9 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V EFG_IV PF03764.13 gi|452205947|ref|YP_007486069.1| - 0.04 13.4 0.2 0.093 12.2 0.1 1.6 1 0 0 1 1 1 0 Elongation factor G, domain IV DNA_ligase_aden PF01653.13 gi|452205948|ref|YP_007486070.1| - 1.8e-103 345.8 0.0 2.4e-103 345.4 0.0 1.1 1 0 0 1 1 1 1 NAD-dependent DNA ligase adenylation domain DNA_ligase_OB PF03120.11 gi|452205948|ref|YP_007486070.1| - 1.2e-27 95.3 4.9 1.5e-27 95.0 2.5 1.8 2 0 0 2 2 2 1 NAD-dependent DNA ligase OB-fold domain HHH_5 PF14520.1 gi|452205948|ref|YP_007486070.1| - 7.7e-22 77.2 3.2 1.2e-09 38.1 0.1 3.8 4 0 0 4 4 4 2 Helix-hairpin-helix domain HHH_2 PF12826.2 gi|452205948|ref|YP_007486070.1| - 8.7e-22 76.7 1.6 4.6e-19 68.0 0.1 2.9 3 0 0 3 3 3 2 Helix-hairpin-helix motif BRCT PF00533.21 gi|452205948|ref|YP_007486070.1| - 4.5e-11 42.7 0.0 8.3e-11 41.8 0.0 1.4 1 0 0 1 1 1 1 BRCA1 C Terminus (BRCT) domain HHH PF00633.18 gi|452205948|ref|YP_007486070.1| - 1.3e-06 27.7 0.3 0.026 14.1 0.1 4.2 4 0 0 4 4 4 1 Helix-hairpin-helix motif DNA_ligase_ZBD PF03119.11 gi|452205948|ref|YP_007486070.1| - 4.1e-05 23.1 4.6 8.9e-05 22.0 3.2 1.6 1 0 0 1 1 1 1 NAD-dependent DNA ligase C4 zinc finger domain HHH_8 PF14716.1 gi|452205948|ref|YP_007486070.1| - 0.016 15.3 0.2 0.44 10.7 0.0 3.3 3 1 1 4 4 4 0 Helix-hairpin-helix domain HHH_3 PF12836.2 gi|452205948|ref|YP_007486070.1| - 0.036 13.9 0.0 0.82 9.6 0.0 2.9 3 0 0 3 3 3 0 Helix-hairpin-helix motif Rad51 PF08423.6 gi|452205950|ref|YP_007486072.1| - 2.9e-78 262.3 0.1 9e-48 162.4 0.0 2.0 2 0 0 2 2 2 2 Rad51 HHH_5 PF14520.1 gi|452205950|ref|YP_007486072.1| - 8.1e-11 41.9 0.0 2.7e-10 40.2 0.0 1.9 1 0 0 1 1 1 1 Helix-hairpin-helix domain AAA_25 PF13481.1 gi|452205950|ref|YP_007486072.1| - 3.6e-10 39.5 0.0 6e-10 38.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain RecA PF00154.16 gi|452205950|ref|YP_007486072.1| - 1.9e-06 27.2 0.0 0.0049 15.9 0.0 2.1 2 0 0 2 2 2 2 recA bacterial DNA recombination protein HHH PF00633.18 gi|452205950|ref|YP_007486072.1| - 4.7e-06 25.9 0.1 8.7e-05 22.0 0.0 2.5 2 0 0 2 2 2 1 Helix-hairpin-helix motif KaiC PF06745.8 gi|452205950|ref|YP_007486072.1| - 2.9e-05 23.2 0.2 9e-05 21.6 0.1 1.8 1 1 0 1 1 1 1 KaiC HHH_2 PF12826.2 gi|452205950|ref|YP_007486072.1| - 0.00069 19.4 1.2 0.004 16.9 0.0 2.8 3 1 1 4 4 4 2 Helix-hairpin-helix motif Cdd1 PF11731.3 gi|452205950|ref|YP_007486072.1| - 0.0033 17.3 0.0 0.0088 15.9 0.0 1.7 1 0 0 1 1 1 1 Pathogenicity locus IMS_HHH PF11798.3 gi|452205950|ref|YP_007486072.1| - 0.013 15.5 0.0 0.049 13.6 0.0 2.1 1 0 0 1 1 1 0 IMS family HHH motif DNA_pol_lambd_f PF10391.4 gi|452205950|ref|YP_007486072.1| - 0.023 14.2 0.0 0.1 12.1 0.0 2.1 1 1 1 2 2 2 0 Fingers domain of DNA polymerase lambda DUF4618 PF15397.1 gi|452205950|ref|YP_007486072.1| - 0.029 13.6 0.0 0.05 12.9 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4618) HHH_8 PF14716.1 gi|452205950|ref|YP_007486072.1| - 0.035 14.2 0.0 0.13 12.4 0.0 2.0 1 0 0 1 1 1 0 Helix-hairpin-helix domain PDDEXK_5 PF11645.3 gi|452205951|ref|YP_007486073.1| - 2.5e-08 33.7 0.0 2.9e-08 33.5 0.0 1.1 1 0 0 1 1 1 1 PD-(D/E)XK endonuclease Pyridox_oxidase PF01243.15 gi|452205952|ref|YP_007486074.1| - 0.00076 19.4 0.0 0.001 19.0 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase RNB PF00773.14 gi|452205953|ref|YP_007486075.1| - 3.7e-80 269.6 0.1 4.8e-78 262.7 0.0 2.1 1 1 0 1 1 1 1 RNB domain DZR PF12773.2 gi|452205954|ref|YP_007486076.1| - 0.017 14.9 1.0 0.029 14.1 0.7 1.4 1 0 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|452205954|ref|YP_007486076.1| - 0.055 12.6 0.1 0.11 11.7 0.0 1.5 1 0 0 1 1 1 0 zinc-ribbon domain Cytochrome_C7 PF14522.1 gi|452205954|ref|YP_007486076.1| - 0.1 12.2 0.8 0.19 11.3 0.5 1.7 1 1 0 1 1 1 0 Cytochrome c7 Cytochrom_NNT PF03264.9 gi|452205954|ref|YP_007486076.1| - 0.12 11.7 0.2 0.17 11.3 0.1 1.2 1 0 0 1 1 1 0 NapC/NirT cytochrome c family, N-terminal region Peptidase_M29 PF02073.10 gi|452205955|ref|YP_007486077.1| - 1.6e-109 366.3 0.9 1.9e-109 366.0 0.6 1.0 1 0 0 1 1 1 1 Thermophilic metalloprotease (M29) OrfB_IS605 PF01385.14 gi|452205956|ref|YP_007486078.1| - 3.6e-61 206.4 0.4 4.6e-61 206.1 0.3 1.1 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|452205956|ref|YP_007486078.1| - 4.7e-20 71.0 0.8 1.1e-19 69.8 0.5 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain SQS_PSY PF00494.14 gi|452205957|ref|YP_007486079.1| - 1.2e-50 172.3 4.4 1.6e-50 171.8 3.1 1.2 1 0 0 1 1 1 1 Squalene/phytoene synthase AAA_17 PF13207.1 gi|452205958|ref|YP_007486080.1| - 5.7e-10 40.0 0.1 7.2e-10 39.7 0.1 1.1 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|452205958|ref|YP_007486080.1| - 3.6e-09 37.0 0.0 4.6e-09 36.6 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|452205958|ref|YP_007486080.1| - 2.1e-06 27.6 0.0 3.2e-06 27.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain CPT PF07931.7 gi|452205958|ref|YP_007486080.1| - 0.02 14.5 0.8 0.025 14.2 0.6 1.2 1 0 0 1 1 1 0 Chloramphenicol phosphotransferase-like protein RNA_binding PF01877.12 gi|452205959|ref|YP_007486081.1| - 5.5e-22 78.0 0.0 9.2e-22 77.2 0.0 1.4 1 1 0 1 1 1 1 RNA binding Band_7 PF01145.20 gi|452205960|ref|YP_007486082.1| - 1.8e-37 128.9 3.7 1.8e-37 128.9 2.6 1.9 2 0 0 2 2 2 1 SPFH domain / Band 7 family Band_7_1 PF13421.1 gi|452205960|ref|YP_007486082.1| - 0.00014 21.4 0.5 0.00031 20.3 0.1 1.8 2 0 0 2 2 2 1 SPFH domain-Band 7 family DUF719 PF05334.8 gi|452205960|ref|YP_007486082.1| - 0.048 13.7 7.1 2.4 8.1 2.0 2.7 1 1 1 2 2 2 0 Protein of unknown function (DUF719) HTH_34 PF13601.1 gi|452205961|ref|YP_007486083.1| - 1.9e-09 37.3 0.0 3.4e-06 26.9 0.0 2.3 2 0 0 2 2 2 2 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|452205961|ref|YP_007486083.1| - 2.4e-08 33.5 0.8 8.5e-05 22.1 0.2 2.7 2 1 0 2 2 2 2 MarR family HTH_20 PF12840.2 gi|452205961|ref|YP_007486083.1| - 3.3e-08 33.1 1.1 0.0054 16.5 0.1 2.3 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_24 PF13412.1 gi|452205961|ref|YP_007486083.1| - 2.5e-07 29.9 0.0 0.00056 19.2 0.0 2.2 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|452205961|ref|YP_007486083.1| - 2.1e-06 27.3 0.0 0.013 15.1 0.0 2.3 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|452205961|ref|YP_007486083.1| - 8.4e-06 25.4 0.0 0.0027 17.3 0.0 2.2 2 0 0 2 2 2 1 MarR family HTH_5 PF01022.15 gi|452205961|ref|YP_007486083.1| - 1.9e-05 24.2 0.0 0.075 12.7 0.0 2.3 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family HTH_23 PF13384.1 gi|452205961|ref|YP_007486083.1| - 0.00012 21.6 0.0 0.00033 20.2 0.0 1.8 1 0 0 1 1 1 1 Homeodomain-like domain HTH_11 PF08279.7 gi|452205961|ref|YP_007486083.1| - 0.0014 18.2 0.0 0.0028 17.2 0.0 1.5 1 0 0 1 1 1 1 HTH domain HTH_Crp_2 PF13545.1 gi|452205961|ref|YP_007486083.1| - 0.0026 17.5 0.0 0.017 14.8 0.0 2.1 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_IclR PF09339.5 gi|452205961|ref|YP_007486083.1| - 0.006 16.1 4.3 0.012 15.1 0.1 2.7 3 0 0 3 3 3 1 IclR helix-turn-helix domain LacI PF00356.16 gi|452205961|ref|YP_007486083.1| - 0.0085 15.6 0.6 0.015 14.8 0.4 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, lacI family HTH_3 PF01381.17 gi|452205961|ref|YP_007486083.1| - 0.0094 15.7 0.2 0.074 12.9 0.1 2.4 3 0 0 3 3 3 1 Helix-turn-helix HTH_31 PF13560.1 gi|452205961|ref|YP_007486083.1| - 0.017 15.3 0.7 0.071 13.3 0.3 2.1 1 1 1 2 2 2 0 Helix-turn-helix domain HTH_AsnC-type PF13404.1 gi|452205961|ref|YP_007486083.1| - 0.02 14.4 0.2 0.048 13.2 0.0 1.7 2 0 0 2 2 1 0 AsnC-type helix-turn-helix domain Fe_dep_repress PF01325.14 gi|452205961|ref|YP_007486083.1| - 0.024 14.5 0.0 0.37 10.7 0.0 2.2 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain GntR PF00392.16 gi|452205961|ref|YP_007486083.1| - 0.029 13.8 0.0 0.41 10.1 0.0 2.4 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family HTH_6 PF01418.12 gi|452205961|ref|YP_007486083.1| - 0.064 12.9 0.0 0.13 12.0 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain, rpiR family HTH_Tnp_1 PF01527.15 gi|452205961|ref|YP_007486083.1| - 0.08 12.9 0.0 0.15 12.0 0.0 1.5 1 0 0 1 1 1 0 Transposase TetR_N PF00440.18 gi|452205961|ref|YP_007486083.1| - 0.13 11.9 0.1 0.29 10.8 0.1 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family HTH_24 PF13412.1 gi|452205962|ref|YP_007486084.1| - 0.0021 17.3 0.5 0.14 11.5 0.0 2.9 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|452205962|ref|YP_007486084.1| - 0.084 12.4 0.1 0.7 9.4 0.1 2.1 1 1 0 1 1 1 0 AsnC-type helix-turn-helix domain LexA_DNA_bind PF01726.11 gi|452205962|ref|YP_007486084.1| - 0.1 12.1 0.0 0.12 11.8 0.0 1.2 1 0 0 1 1 1 0 LexA DNA binding domain TRAM PF01938.15 gi|452205963|ref|YP_007486085.1| - 2.1e-15 56.2 2.2 4.1e-15 55.3 1.5 1.5 1 0 0 1 1 1 1 TRAM domain CxxCxxCC PF03692.10 gi|452205964|ref|YP_007486086.1| - 4.4e-13 49.5 0.0 8.6e-13 48.5 0.0 1.5 1 1 0 1 1 1 1 Putative zinc- or iron-chelating domain HIPIP PF01355.12 gi|452205964|ref|YP_007486086.1| - 0.0081 16.2 0.9 0.014 15.5 0.0 1.8 2 0 0 2 2 2 1 High potential iron-sulfur protein HHH_5 PF14520.1 gi|452205965|ref|YP_007486087.1| - 1.7e-08 34.5 0.1 2.6e-08 33.9 0.1 1.3 1 0 0 1 1 1 1 Helix-hairpin-helix domain DUF4332 PF14229.1 gi|452205965|ref|YP_007486087.1| - 2.7e-05 24.1 0.1 0.0018 18.2 0.0 2.1 1 1 1 2 2 2 2 Domain of unknown function (DUF4332) DNA_pol_lambd_f PF10391.4 gi|452205965|ref|YP_007486087.1| - 0.0044 16.5 0.0 0.0076 15.7 0.0 1.3 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda Cdd1 PF11731.3 gi|452205965|ref|YP_007486087.1| - 0.0059 16.5 0.0 0.0098 15.7 0.0 1.4 1 0 0 1 1 1 1 Pathogenicity locus Chorismate_bind PF00425.13 gi|452205966|ref|YP_007486088.1| - 5.3e-98 327.4 0.0 7.3e-98 326.9 0.0 1.2 1 0 0 1 1 1 1 chorismate binding enzyme Anth_synt_I_N PF04715.8 gi|452205966|ref|YP_007486088.1| - 6.9e-14 52.0 0.0 3e-13 49.9 0.0 2.1 3 0 0 3 3 3 1 Anthranilate synthase component I, N terminal region GATase PF00117.23 gi|452205967|ref|YP_007486089.1| - 7e-45 152.8 0.0 7.9e-45 152.6 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|452205967|ref|YP_007486089.1| - 3.6e-06 26.5 0.1 7.4e-06 25.5 0.0 1.5 1 1 0 1 1 1 1 Peptidase C26 Aminotran_4 PF01063.14 gi|452205968|ref|YP_007486090.1| - 2.9e-40 138.1 0.0 3.7e-40 137.8 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class IV Rieske PF00355.21 gi|452205969|ref|YP_007486091.1| - 8e-06 25.3 0.0 1e-05 24.9 0.0 1.2 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain DUF2318 PF10080.4 gi|452205969|ref|YP_007486091.1| - 0.11 12.3 0.0 0.13 12.0 0.0 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2318) PAS_3 PF08447.6 gi|452205970|ref|YP_007486092.1| - 3.9e-20 71.7 0.2 7.3e-20 70.8 0.1 1.5 1 0 0 1 1 1 1 PAS fold HTH_10 PF04967.7 gi|452205970|ref|YP_007486092.1| - 3.7e-18 64.8 0.0 6.5e-18 64.0 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain GAF_2 PF13185.1 gi|452205970|ref|YP_007486092.1| - 1e-13 52.0 0.4 3.6e-13 50.2 0.1 2.2 2 0 0 2 2 2 1 GAF domain PAS_9 PF13426.1 gi|452205970|ref|YP_007486092.1| - 2.4e-08 34.3 0.0 5.8e-08 33.0 0.0 1.7 1 0 0 1 1 1 1 PAS domain PAS_4 PF08448.5 gi|452205970|ref|YP_007486092.1| - 8e-06 25.8 0.3 2e-05 24.5 0.2 1.8 1 0 0 1 1 1 1 PAS fold Sigma70_r4 PF04545.11 gi|452205970|ref|YP_007486092.1| - 3.7e-05 22.9 0.0 8.7e-05 21.7 0.0 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 PAS PF00989.19 gi|452205970|ref|YP_007486092.1| - 6.3e-05 22.7 0.0 0.00013 21.7 0.0 1.5 1 0 0 1 1 1 1 PAS fold GAF_3 PF13492.1 gi|452205970|ref|YP_007486092.1| - 9e-05 22.5 0.0 0.00026 21.0 0.0 1.8 1 0 0 1 1 1 1 GAF domain GAF PF01590.21 gi|452205970|ref|YP_007486092.1| - 0.00076 19.6 0.0 0.0018 18.4 0.0 1.7 1 1 0 1 1 1 1 GAF domain Phage_CI_repr PF07022.8 gi|452205970|ref|YP_007486092.1| - 0.0048 16.9 0.0 6 7.0 0.0 3.2 3 1 0 3 3 3 2 Bacteriophage CI repressor helix-turn-helix domain GerE PF00196.14 gi|452205970|ref|YP_007486092.1| - 0.0078 15.5 0.0 0.063 12.6 0.0 2.1 1 1 0 1 1 1 1 Bacterial regulatory proteins, luxR family PTA_PTB PF01515.14 gi|452205971|ref|YP_007486093.1| - 1e-90 304.0 0.0 1.4e-90 303.6 0.0 1.2 1 0 0 1 1 1 1 Phosphate acetyl/butaryl transferase Malic_M PF03949.10 gi|452205971|ref|YP_007486093.1| - 9.6e-66 221.9 0.9 9.6e-66 221.9 0.6 1.8 2 0 0 2 2 2 1 Malic enzyme, NAD binding domain malic PF00390.14 gi|452205971|ref|YP_007486093.1| - 1.1e-28 100.0 0.0 2.7e-23 82.4 0.0 2.3 1 1 1 2 2 2 2 Malic enzyme, N-terminal domain PAS_9 PF13426.1 gi|452205972|ref|YP_007486094.1| - 1.9e-28 98.8 1.9 6.6e-12 45.7 0.0 3.6 3 0 0 3 3 3 3 PAS domain PAS_3 PF08447.6 gi|452205972|ref|YP_007486094.1| - 4.7e-26 90.7 0.9 1.5e-10 40.9 0.1 3.5 3 0 0 3 3 3 3 PAS fold PAS_4 PF08448.5 gi|452205972|ref|YP_007486094.1| - 1.7e-17 63.4 24.8 3.5e-11 43.1 0.8 5.3 6 0 0 6 6 5 2 PAS fold PAS PF00989.19 gi|452205972|ref|YP_007486094.1| - 1.7e-17 63.2 0.2 2.3e-11 43.4 0.0 3.2 3 0 0 3 3 3 2 PAS fold Response_reg PF00072.19 gi|452205972|ref|YP_007486094.1| - 3.6e-17 62.3 0.0 1.2e-16 60.7 0.0 1.9 1 0 0 1 1 1 1 Response regulator receiver domain HATPase_c PF02518.21 gi|452205972|ref|YP_007486094.1| - 1.1e-15 57.2 0.0 2.6e-15 56.0 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.1 gi|452205972|ref|YP_007486094.1| - 1.4e-12 47.0 0.2 8e-05 22.3 0.0 3.5 3 0 0 3 3 3 2 PAS domain HisKA PF00512.20 gi|452205972|ref|YP_007486094.1| - 1.4e-12 47.4 0.4 1.4e-12 47.4 0.3 3.2 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain GAF_2 PF13185.1 gi|452205972|ref|YP_007486094.1| - 1.7e-07 31.8 0.4 1.7e-07 31.8 0.3 3.2 4 1 0 4 4 4 1 GAF domain GAF_3 PF13492.1 gi|452205972|ref|YP_007486094.1| - 1.8e-06 28.1 0.3 8.6e-06 25.8 0.0 2.2 2 0 0 2 2 2 1 GAF domain OKR_DC_1_N PF03709.10 gi|452205972|ref|YP_007486094.1| - 0.00043 20.3 0.0 0.0013 18.7 0.0 1.8 1 0 0 1 1 1 1 Orn/Lys/Arg decarboxylase, N-terminal domain HATPase_c_2 PF13581.1 gi|452205972|ref|YP_007486094.1| - 0.00056 19.7 0.1 0.0018 18.0 0.1 1.9 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain GAF PF01590.21 gi|452205972|ref|YP_007486094.1| - 0.013 15.6 1.3 0.037 14.1 0.1 2.3 2 0 0 2 2 2 0 GAF domain Peptidase_U35 PF04586.12 gi|452205972|ref|YP_007486094.1| - 0.071 13.1 1.2 0.79 9.7 0.1 2.9 3 0 0 3 3 3 0 Caudovirus prohead protease MFS_1 PF07690.11 gi|452205973|ref|YP_007486095.1| - 1e-25 90.2 63.2 1.6e-21 76.4 20.3 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily TauE PF01925.14 gi|452205974|ref|YP_007486096.1| - 1.6e-20 73.5 42.1 1.9e-20 73.3 29.2 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE TRM PF02005.11 gi|452205975|ref|YP_007486097.1| - 2e-86 290.3 0.0 2.2e-86 290.1 0.0 1.0 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Methyltransf_26 PF13659.1 gi|452205975|ref|YP_007486097.1| - 2.6e-06 27.4 1.6 5.8e-06 26.3 0.8 1.8 1 1 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|452205975|ref|YP_007486097.1| - 1.8e-05 24.0 0.8 2.6e-05 23.4 0.5 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) MTS PF05175.9 gi|452205975|ref|YP_007486097.1| - 2e-05 24.0 0.0 3e-05 23.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain UPF0020 PF01170.13 gi|452205975|ref|YP_007486097.1| - 0.00087 18.9 0.0 0.0015 18.0 0.0 1.3 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_31 PF13847.1 gi|452205975|ref|YP_007486097.1| - 0.0016 18.0 0.0 0.0024 17.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain FmrO PF07091.6 gi|452205975|ref|YP_007486097.1| - 0.031 13.2 0.5 0.048 12.6 0.1 1.5 2 0 0 2 2 2 0 Ribosomal RNA methyltransferase (FmrO) Zn-ribbon_8 PF09723.5 gi|452205975|ref|YP_007486097.1| - 0.036 14.0 0.4 0.088 12.7 0.3 1.7 1 0 0 1 1 1 0 Zinc ribbon domain Methyltransf_18 PF12847.2 gi|452205975|ref|YP_007486097.1| - 0.092 13.3 0.0 0.17 12.4 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Antitoxin-MazE PF04014.13 gi|452205976|ref|YP_007486098.1| - 3.7e-12 45.6 0.2 4.9e-12 45.2 0.1 1.2 1 0 0 1 1 1 1 Antidote-toxin recognition MazE DUF2997 PF11211.3 gi|452205976|ref|YP_007486098.1| - 0.27 10.6 1.4 1.2 8.5 0.3 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2997) PIN PF01850.16 gi|452205977|ref|YP_007486099.1| - 9.1e-12 45.3 2.6 1e-11 45.2 1.8 1.0 1 0 0 1 1 1 1 PIN domain Peptidase_M32 PF02074.10 gi|452205978|ref|YP_007486100.1| - 9.5e-144 479.6 0.0 1.1e-143 479.4 0.0 1.0 1 0 0 1 1 1 1 Carboxypeptidase Taq (M32) metallopeptidase Tox-REase-5 PF15648.1 gi|452205978|ref|YP_007486100.1| - 0.099 12.9 0.0 0.22 11.8 0.0 1.5 1 0 0 1 1 1 0 Restriction endonuclease fold toxin 5 T2SE PF00437.15 gi|452205979|ref|YP_007486101.1| - 1.7e-13 50.1 0.3 2.8e-13 49.4 0.2 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein KH_1 PF00013.24 gi|452205979|ref|YP_007486101.1| - 4.8e-07 29.3 0.6 1.5e-06 27.7 0.0 2.2 2 0 0 2 2 2 1 KH domain PIN PF01850.16 gi|452205979|ref|YP_007486101.1| - 1.5e-05 25.3 0.2 4.6e-05 23.7 0.1 2.0 1 0 0 1 1 1 1 PIN domain AAA_17 PF13207.1 gi|452205979|ref|YP_007486101.1| - 3.1e-05 24.7 0.1 0.0002 22.1 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|452205979|ref|YP_007486101.1| - 0.00065 19.5 0.0 0.01 15.6 0.0 2.7 3 0 0 3 3 3 1 AAA domain AAA_16 PF13191.1 gi|452205979|ref|YP_007486101.1| - 0.00079 19.4 0.1 0.0037 17.2 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.1 gi|452205979|ref|YP_007486101.1| - 0.0012 18.2 0.0 0.0035 16.8 0.0 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_30 PF13604.1 gi|452205979|ref|YP_007486101.1| - 0.0013 18.3 0.1 0.0037 16.8 0.0 1.7 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.7 gi|452205979|ref|YP_007486101.1| - 0.0016 17.5 0.2 0.0053 15.8 0.0 1.9 2 0 0 2 2 2 1 Zeta toxin AAA_19 PF13245.1 gi|452205979|ref|YP_007486101.1| - 0.0017 18.0 0.0 0.0053 16.4 0.0 1.8 1 0 0 1 1 1 1 Part of AAA domain AAA_25 PF13481.1 gi|452205979|ref|YP_007486101.1| - 0.002 17.5 0.4 0.0071 15.7 0.0 2.1 2 0 0 2 2 2 1 AAA domain ArgK PF03308.11 gi|452205979|ref|YP_007486101.1| - 0.0035 16.1 2.8 0.067 11.9 0.0 3.2 2 1 0 3 3 3 1 ArgK protein AAA_14 PF13173.1 gi|452205979|ref|YP_007486101.1| - 0.0043 16.9 0.0 0.0084 16.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain KH_3 PF13014.1 gi|452205979|ref|YP_007486101.1| - 0.0045 16.6 0.4 0.012 15.2 0.3 1.7 1 0 0 1 1 1 1 KH domain IstB_IS21 PF01695.12 gi|452205979|ref|YP_007486101.1| - 0.0051 16.2 0.0 0.0088 15.4 0.0 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein KaiC PF06745.8 gi|452205979|ref|YP_007486101.1| - 0.0056 15.8 0.0 0.15 11.1 0.0 2.2 2 0 0 2 2 2 1 KaiC NTPase_1 PF03266.10 gi|452205979|ref|YP_007486101.1| - 0.0062 16.2 0.0 0.015 14.9 0.0 1.7 1 0 0 1 1 1 1 NTPase AAA_5 PF07728.9 gi|452205979|ref|YP_007486101.1| - 0.0065 16.2 0.0 0.015 15.0 0.0 1.6 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_18 PF13238.1 gi|452205979|ref|YP_007486101.1| - 0.0073 16.6 0.0 0.024 14.9 0.0 2.0 2 0 0 2 2 1 1 AAA domain Thymidylate_kin PF02223.12 gi|452205979|ref|YP_007486101.1| - 0.01 15.2 0.0 0.029 13.7 0.0 1.8 1 1 0 1 1 1 0 Thymidylate kinase AAA_22 PF13401.1 gi|452205979|ref|YP_007486101.1| - 0.015 15.4 0.0 0.039 14.1 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|452205979|ref|YP_007486101.1| - 0.031 14.2 0.0 0.11 12.4 0.0 2.0 1 0 0 1 1 1 0 AAA domain AAA PF00004.24 gi|452205979|ref|YP_007486101.1| - 0.036 14.2 0.0 0.096 12.8 0.0 1.7 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) KH_2 PF07650.12 gi|452205979|ref|YP_007486101.1| - 0.059 12.9 0.3 0.14 11.7 0.2 1.6 1 0 0 1 1 1 0 KH domain FtsK_SpoIIIE PF01580.13 gi|452205979|ref|YP_007486101.1| - 0.081 12.3 0.0 0.22 10.9 0.0 1.7 1 0 0 1 1 1 0 FtsK/SpoIIIE family ABC_tran PF00005.22 gi|452205979|ref|YP_007486101.1| - 0.1 12.8 0.0 0.36 11.1 0.0 1.9 1 0 0 1 1 1 0 ABC transporter KTI12 PF08433.5 gi|452205979|ref|YP_007486101.1| - 0.15 11.2 0.0 0.36 9.9 0.0 1.6 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA_18 PF13238.1 gi|452205981|ref|YP_007486103.1| - 3.9e-11 43.3 0.0 5.1e-11 42.9 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|452205981|ref|YP_007486103.1| - 0.00081 20.1 0.0 0.0014 19.4 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|452205981|ref|YP_007486103.1| - 0.057 13.3 0.1 0.071 13.0 0.0 1.2 1 0 0 1 1 1 0 AAA ATPase domain UDPG_MGDP_dh_N PF03721.9 gi|452205981|ref|YP_007486103.1| - 0.13 11.6 0.0 0.22 10.8 0.0 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain FAD-oxidase_C PF02913.14 gi|452205982|ref|YP_007486104.1| - 3.2e-67 226.4 0.0 6.9e-67 225.3 0.0 1.6 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.18 gi|452205982|ref|YP_007486104.1| - 3.3e-41 140.0 0.4 5.9e-41 139.2 0.3 1.4 1 0 0 1 1 1 1 FAD binding domain Fer4_17 PF13534.1 gi|452205982|ref|YP_007486104.1| - 1.5e-08 34.8 3.8 3e-08 33.8 2.7 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|452205982|ref|YP_007486104.1| - 7.2e-07 29.1 5.7 1.4e-06 28.2 4.0 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain CCG PF02754.11 gi|452205982|ref|YP_007486104.1| - 4e-06 26.7 0.0 0.00049 20.0 0.0 2.7 2 0 0 2 2 2 1 Cysteine-rich domain Fer4_18 PF13746.1 gi|452205982|ref|YP_007486104.1| - 0.00012 22.4 1.0 0.00012 22.4 0.7 2.6 3 0 0 3 3 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|452205982|ref|YP_007486104.1| - 0.00042 20.5 2.9 0.003 17.7 0.3 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|452205982|ref|YP_007486104.1| - 0.0037 17.0 3.3 0.028 14.2 0.2 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Cytokin-bind PF09265.5 gi|452205982|ref|YP_007486104.1| - 0.0065 15.6 0.1 0.011 14.8 0.0 1.3 1 0 0 1 1 1 1 Cytokinin dehydrogenase 1, FAD and cytokinin binding Fer4_7 PF12838.2 gi|452205982|ref|YP_007486104.1| - 0.074 13.4 6.1 0.66 10.4 4.4 2.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|452205982|ref|YP_007486104.1| - 1.1 9.1 10.5 0.21 11.4 0.4 2.8 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4 PF00037.22 gi|452205982|ref|YP_007486104.1| - 4.8 6.9 12.8 0.15 11.7 2.1 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Ribonuclease PF00545.15 gi|452205983|ref|YP_007486105.1| - 0.14 12.2 0.1 0.19 11.7 0.1 1.2 1 0 0 1 1 1 0 ribonuclease TBP PF00352.16 gi|452205985|ref|YP_007486107.1| - 9.2e-66 217.2 0.0 6.4e-32 108.7 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.3 gi|452205985|ref|YP_007486107.1| - 0.0099 15.9 0.0 1.6 8.8 0.0 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) CENP-F_C_Rb_bdg PF10490.4 gi|452205985|ref|YP_007486107.1| - 0.036 13.3 0.6 8.9 5.7 0.0 2.3 2 0 0 2 2 2 0 Rb-binding domain of kinetochore protein Cenp-F/LEK1 EB1 PF03271.12 gi|452205985|ref|YP_007486107.1| - 0.13 12.3 0.2 0.41 10.7 0.2 1.9 1 1 0 1 1 1 0 EB1-like C-terminal motif FMN_dh PF01070.13 gi|452205986|ref|YP_007486108.1| - 6.1e-121 403.5 0.0 7.2e-121 403.3 0.0 1.0 1 0 0 1 1 1 1 FMN-dependent dehydrogenase ThiG PF05690.9 gi|452205986|ref|YP_007486108.1| - 1.2e-08 34.4 0.0 0.0003 19.9 0.0 2.2 1 1 1 2 2 2 2 Thiazole biosynthesis protein ThiG IMPDH PF00478.20 gi|452205986|ref|YP_007486108.1| - 8.7e-07 28.1 0.3 1.7e-06 27.1 0.2 1.5 1 1 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain His_biosynth PF00977.16 gi|452205986|ref|YP_007486108.1| - 0.017 14.4 0.0 0.35 10.0 0.0 2.3 1 1 1 2 2 2 0 Histidine biosynthesis protein NMO PF03060.10 gi|452205986|ref|YP_007486108.1| - 0.072 12.2 0.6 0.14 11.2 0.4 1.4 1 0 0 1 1 1 0 Nitronate monooxygenase Glu_synthase PF01645.12 gi|452205986|ref|YP_007486108.1| - 0.073 11.9 0.2 0.11 11.3 0.1 1.3 1 0 0 1 1 1 0 Conserved region in glutamate synthase PcrB PF01884.12 gi|452205986|ref|YP_007486108.1| - 0.18 11.0 0.1 7.4 5.7 0.0 2.4 1 1 1 2 2 2 0 PcrB family DHO_dh PF01180.16 gi|452205986|ref|YP_007486108.1| - 0.2 10.6 0.0 1.2 8.0 0.0 1.9 1 1 1 2 2 2 0 Dihydroorotate dehydrogenase HisG PF01634.13 gi|452205987|ref|YP_007486109.1| - 3e-44 150.4 0.0 4.1e-44 150.0 0.0 1.2 1 0 0 1 1 1 1 ATP phosphoribosyltransferase HisG_C PF08029.6 gi|452205987|ref|YP_007486109.1| - 8.8e-25 86.4 0.1 1.4e-24 85.7 0.1 1.4 1 0 0 1 1 1 1 HisG, C-terminal domain Pkinase PF00069.20 gi|452205988|ref|YP_007486110.1| - 0.002 17.3 0.0 0.0042 16.2 0.0 1.6 1 1 0 1 1 1 1 Protein kinase domain HEAT_EZ PF13513.1 gi|452205988|ref|YP_007486110.1| - 0.026 15.0 8.2 0.077 13.5 1.4 3.7 2 1 1 3 3 3 0 HEAT-like repeat Pkinase_Tyr PF07714.12 gi|452205988|ref|YP_007486110.1| - 0.027 13.5 0.0 0.048 12.7 0.0 1.4 1 1 0 1 1 1 0 Protein tyrosine kinase HEAT_2 PF13646.1 gi|452205988|ref|YP_007486110.1| - 0.052 13.8 3.8 0.096 12.9 2.0 1.9 1 1 0 1 1 1 0 HEAT repeats TPR_19 PF14559.1 gi|452205988|ref|YP_007486110.1| - 0.07 13.4 1.3 0.2 12.0 0.9 1.8 1 0 0 1 1 1 0 Tetratricopeptide repeat Zn_Tnp_IS1595 PF12760.2 gi|452205990|ref|YP_007486112.1| - 0.013 15.2 2.4 0.024 14.4 1.7 1.4 1 0 0 1 1 1 0 Transposase zinc-ribbon domain RRN7 PF11781.3 gi|452205990|ref|YP_007486112.1| - 0.032 13.7 5.6 0.059 12.8 3.9 1.4 1 0 0 1 1 1 0 RNA polymerase I-specific transcription initiation factor Rrn7 Nudix_N_2 PF14803.1 gi|452205990|ref|YP_007486112.1| - 0.044 13.4 2.6 0.092 12.4 1.8 1.5 1 0 0 1 1 1 0 Nudix N-terminal OrfB_Zn_ribbon PF07282.6 gi|452205990|ref|YP_007486112.1| - 0.046 13.3 0.9 0.092 12.4 0.6 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Bac_export_3 PF01313.14 gi|452205991|ref|YP_007486113.1| - 0.13 11.9 1.5 0.16 11.6 1.0 1.2 1 0 0 1 1 1 0 Bacterial export proteins, family 3 Bac_luciferase PF00296.15 gi|452205992|ref|YP_007486114.1| - 4.3e-57 193.5 9.2 5.6e-57 193.2 6.4 1.0 1 0 0 1 1 1 1 Luciferase-like monooxygenase F420_ligase PF01996.11 gi|452205993|ref|YP_007486115.1| - 1.5e-65 220.4 0.0 1.8e-65 220.2 0.0 1.0 1 0 0 1 1 1 1 F420-0:Gamma-glutamyl ligase Shikimate_dh_N PF08501.6 gi|452205994|ref|YP_007486116.1| - 3.2e-25 87.9 0.0 1.1e-24 86.2 0.0 1.9 2 0 0 2 2 2 1 Shikimate dehydrogenase substrate binding domain Shikimate_DH PF01488.15 gi|452205994|ref|YP_007486116.1| - 1.8e-13 50.7 0.1 2.5e-13 50.3 0.1 1.2 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase Saccharop_dh PF03435.13 gi|452205994|ref|YP_007486116.1| - 8.7e-05 21.6 1.9 0.00015 20.9 1.3 1.4 1 0 0 1 1 1 1 Saccharopine dehydrogenase NAD_binding_10 PF13460.1 gi|452205994|ref|YP_007486116.1| - 0.00066 19.7 3.4 0.0014 18.6 2.4 1.6 1 0 0 1 1 1 1 NADH(P)-binding IlvN PF07991.7 gi|452205994|ref|YP_007486116.1| - 0.0043 16.4 0.5 0.0069 15.7 0.3 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain FAD_binding_2 PF00890.19 gi|452205994|ref|YP_007486116.1| - 0.0063 15.4 8.1 0.01 14.7 5.6 1.3 1 0 0 1 1 1 1 FAD binding domain 2-Hacid_dh_C PF02826.14 gi|452205994|ref|YP_007486116.1| - 0.013 14.6 0.1 0.022 13.9 0.1 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Pyr_redox_2 PF07992.9 gi|452205994|ref|YP_007486116.1| - 0.029 14.2 4.0 0.098 12.5 2.8 1.9 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase ApbA PF02558.11 gi|452205994|ref|YP_007486116.1| - 0.033 13.6 1.3 0.063 12.7 0.9 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Thi4 PF01946.12 gi|452205994|ref|YP_007486116.1| - 0.038 13.0 0.4 0.084 11.9 0.3 1.6 1 0 0 1 1 1 0 Thi4 family AdoHcyase_NAD PF00670.16 gi|452205994|ref|YP_007486116.1| - 0.062 13.1 1.3 0.1 12.4 0.9 1.2 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain GIDA PF01134.17 gi|452205994|ref|YP_007486116.1| - 0.086 11.6 5.6 0.11 11.3 3.8 1.1 1 0 0 1 1 1 0 Glucose inhibited division protein A 3HCDH_N PF02737.13 gi|452205994|ref|YP_007486116.1| - 0.15 11.7 2.6 0.23 11.1 1.8 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.18 gi|452205994|ref|YP_007486116.1| - 0.16 11.6 1.1 0.38 10.4 0.8 1.7 1 1 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_8 PF13450.1 gi|452205994|ref|YP_007486116.1| - 9.3 6.3 9.0 0.19 11.7 1.0 2.1 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain tRNA_deacylase PF04414.7 gi|452205995|ref|YP_007486117.1| - 2.7e-59 199.8 0.0 3.9e-59 199.3 0.0 1.2 1 0 0 1 1 1 1 D-aminoacyl-tRNA deacylase ABC_tran PF00005.22 gi|452205996|ref|YP_007486118.1| - 8.9e-31 107.0 0.0 1.4e-30 106.3 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|452205996|ref|YP_007486118.1| - 4.7e-09 36.6 0.2 0.00014 21.9 0.0 2.1 1 1 1 2 2 2 2 AAA domain TOBE PF03459.12 gi|452205996|ref|YP_007486118.1| - 3.6e-08 33.4 5.5 1.1e-06 28.6 0.1 2.8 3 0 0 3 3 2 2 TOBE domain TOBE_2 PF08402.5 gi|452205996|ref|YP_007486118.1| - 8.3e-07 28.9 1.0 7e-06 25.9 0.1 2.6 2 0 0 2 2 2 1 TOBE domain AAA_19 PF13245.1 gi|452205996|ref|YP_007486118.1| - 0.00031 20.4 1.7 0.0084 15.8 0.1 3.5 2 2 0 2 2 2 1 Part of AAA domain SMC_N PF02463.14 gi|452205996|ref|YP_007486118.1| - 0.0012 18.0 0.0 0.096 11.8 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_30 PF13604.1 gi|452205996|ref|YP_007486118.1| - 0.0013 18.3 0.0 0.0033 17.0 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|452205996|ref|YP_007486118.1| - 0.0013 18.7 1.5 0.0048 16.9 0.9 2.1 1 1 0 1 1 1 1 AAA ATPase domain AAA_17 PF13207.1 gi|452205996|ref|YP_007486118.1| - 0.0013 19.5 0.0 0.0025 18.5 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|452205996|ref|YP_007486118.1| - 0.0017 17.7 0.0 0.0041 16.5 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|452205996|ref|YP_007486118.1| - 0.0027 17.1 0.1 0.0062 16.0 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_33 PF13671.1 gi|452205996|ref|YP_007486118.1| - 0.01 15.7 1.1 0.075 12.9 0.8 2.2 1 1 0 1 1 1 0 AAA domain AAA PF00004.24 gi|452205996|ref|YP_007486118.1| - 0.015 15.5 0.0 0.035 14.2 0.0 1.7 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|452205996|ref|YP_007486118.1| - 0.042 13.9 0.2 0.13 12.4 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.1 gi|452205996|ref|YP_007486118.1| - 0.062 13.6 0.0 0.095 13.0 0.0 1.2 1 0 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|452205996|ref|YP_007486118.1| - 0.064 12.4 0.0 0.12 11.5 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 MobB PF03205.9 gi|452205996|ref|YP_007486118.1| - 0.09 12.4 0.2 0.18 11.4 0.1 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B NACHT PF05729.7 gi|452205996|ref|YP_007486118.1| - 0.091 12.4 0.9 0.15 11.6 0.1 1.7 2 0 0 2 2 2 0 NACHT domain AAA_15 PF13175.1 gi|452205996|ref|YP_007486118.1| - 0.14 11.1 0.0 2.6 7.0 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain SbcCD_C PF13558.1 gi|452205996|ref|YP_007486118.1| - 0.16 11.9 0.2 1.9 8.4 0.1 2.6 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit BPD_transp_1 PF00528.17 gi|452205997|ref|YP_007486119.1| - 4.4e-18 65.4 15.2 4.4e-18 65.4 10.5 1.7 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF4212 PF13937.1 gi|452205997|ref|YP_007486119.1| - 0.16 11.9 2.4 0.38 10.7 0.1 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4212) SBP_bac_11 PF13531.1 gi|452205998|ref|YP_007486120.1| - 1.3e-17 64.2 0.3 1.7e-17 63.8 0.2 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.1 gi|452205998|ref|YP_007486120.1| - 0.072 12.4 0.0 0.1 11.9 0.0 1.2 1 0 0 1 1 1 0 Bacterial extracellular solute-binding protein Peptidase_S74 PF13884.1 gi|452205999|ref|YP_007486121.1| - 1.4e-05 25.1 0.0 2.9e-05 24.1 0.0 1.5 1 0 0 1 1 1 1 Chaperone of endosialidase Rootletin PF15035.1 gi|452205999|ref|YP_007486121.1| - 0.018 15.0 0.6 0.018 15.0 0.4 2.0 2 0 0 2 2 2 0 Ciliary rootlet component, centrosome cohesion bZIP_1 PF00170.16 gi|452205999|ref|YP_007486121.1| - 0.025 14.5 0.8 0.025 14.5 0.6 2.1 2 0 0 2 2 2 0 bZIP transcription factor DivIC PF04977.10 gi|452205999|ref|YP_007486121.1| - 0.15 11.5 11.6 0.016 14.6 1.2 2.3 2 0 0 2 2 2 0 Septum formation initiator CDC37_N PF03234.9 gi|452205999|ref|YP_007486121.1| - 0.3 11.3 4.0 4.9 7.4 0.4 2.2 2 0 0 2 2 2 0 Cdc37 N terminal kinase binding IncA PF04156.9 gi|452205999|ref|YP_007486121.1| - 0.3 10.6 12.4 0.027 14.0 1.8 2.2 2 0 0 2 2 2 0 IncA protein DUF972 PF06156.8 gi|452205999|ref|YP_007486121.1| - 0.35 11.2 5.1 0.14 12.4 0.2 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF972) ADIP PF11559.3 gi|452205999|ref|YP_007486121.1| - 0.37 10.6 9.5 0.18 11.6 0.2 2.2 2 0 0 2 2 2 0 Afadin- and alpha -actinin-Binding KLRAQ PF10205.4 gi|452205999|ref|YP_007486121.1| - 0.76 9.8 7.1 0.48 10.4 0.4 2.3 2 0 0 2 2 2 0 Predicted coiled-coil domain-containing protein DUF16 PF01519.11 gi|452205999|ref|YP_007486121.1| - 1.2 9.4 3.9 14 5.9 0.6 2.3 2 0 0 2 2 2 0 Protein of unknown function DUF16 Atg14 PF10186.4 gi|452205999|ref|YP_007486121.1| - 1.7 7.5 4.2 11 4.8 0.2 2.1 2 0 0 2 2 2 0 UV radiation resistance protein and autophagy-related subunit 14 DUF3450 PF11932.3 gi|452205999|ref|YP_007486121.1| - 1.7 7.8 9.8 1.6 7.9 0.8 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3450) GrpE PF01025.14 gi|452205999|ref|YP_007486121.1| - 2.8 7.4 10.9 3.1 7.3 1.5 2.2 2 0 0 2 2 2 0 GrpE DUF2205 PF10224.4 gi|452205999|ref|YP_007486121.1| - 3.7 7.1 6.0 0.25 10.9 0.4 1.8 2 0 0 2 2 2 0 Predicted coiled-coil protein (DUF2205) DUF4201 PF13870.1 gi|452205999|ref|YP_007486121.1| - 4.4 6.7 6.2 0.39 10.1 0.7 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4201) bZIP_2 PF07716.10 gi|452205999|ref|YP_007486121.1| - 4.5 7.1 11.8 0.074 12.8 1.7 2.2 2 0 0 2 2 2 0 Basic region leucine zipper CENP-Q PF13094.1 gi|452205999|ref|YP_007486121.1| - 5.5 7.0 12.2 4.3 7.3 1.3 2.2 2 0 0 2 2 2 0 CENP-Q, a CENPA-CAD centromere complex subunit UPF0150 PF03681.10 gi|452206000|ref|YP_007486122.1| - 2.8e-07 30.0 0.1 4.4e-07 29.4 0.1 1.4 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0150) T2SG PF08334.6 gi|452206000|ref|YP_007486122.1| - 0.014 15.1 0.0 0.021 14.5 0.0 1.3 1 1 0 1 1 1 0 Type II secretion system (T2SS), protein G BTAD PF03704.12 gi|452206000|ref|YP_007486122.1| - 0.03 14.6 0.7 0.068 13.4 0.5 1.6 1 1 0 1 1 1 0 Bacterial transcriptional activator domain DUF4129 PF13559.1 gi|452206000|ref|YP_007486122.1| - 0.21 11.5 1.3 0.29 11.1 0.9 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4129) YcfA PF07927.7 gi|452206001|ref|YP_007486123.1| - 2.8e-10 39.9 0.0 4.8e-10 39.2 0.0 1.4 1 1 0 1 1 1 1 YcfA-like protein PIG-X PF08320.7 gi|452206001|ref|YP_007486123.1| - 0.078 12.2 0.0 0.085 12.1 0.0 1.1 1 0 0 1 1 1 0 PIG-X / PBN1 YcfA PF07927.7 gi|452206002|ref|YP_007486124.1| - 2.8e-10 39.9 0.0 3.7e-10 39.5 0.0 1.2 1 0 0 1 1 1 1 YcfA-like protein UPF0150 PF03681.10 gi|452206003|ref|YP_007486125.1| - 0.00034 20.1 0.1 0.00058 19.4 0.0 1.4 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0150) MetJ PF01340.15 gi|452206003|ref|YP_007486125.1| - 0.026 14.2 0.1 0.038 13.7 0.0 1.4 1 0 0 1 1 1 0 Met Apo-repressor, MetJ L_lactis_ph-MCP PF06673.6 gi|452206003|ref|YP_007486125.1| - 0.1 11.3 0.0 0.12 11.1 0.0 1.0 1 0 0 1 1 1 0 Lactococcus lactis bacteriophage major capsid protein NTP_transf_2 PF01909.18 gi|452206004|ref|YP_007486126.1| - 6.8e-07 29.5 0.1 8.8e-07 29.1 0.1 1.5 1 1 0 1 1 1 1 Nucleotidyltransferase domain DUF294 PF03445.8 gi|452206004|ref|YP_007486126.1| - 0.0034 16.9 0.0 0.0073 15.9 0.0 1.5 2 0 0 2 2 2 1 Putative nucleotidyltransferase DUF294 Plasmid_stabil PF05016.9 gi|452206006|ref|YP_007486128.1| - 7.8e-09 35.8 0.3 3.5e-08 33.7 0.2 1.8 1 1 0 1 1 1 1 Plasmid stabilisation system protein Peptidase_S74 PF13884.1 gi|452206007|ref|YP_007486129.1| - 1.6e-13 50.5 0.0 2.9e-13 49.7 0.0 1.5 1 0 0 1 1 1 1 Chaperone of endosialidase Herpes_UL6 PF01763.11 gi|452206007|ref|YP_007486129.1| - 0.011 13.9 0.6 0.2 9.7 0.0 2.0 2 0 0 2 2 2 0 Herpesvirus UL6 like DivIC PF04977.10 gi|452206007|ref|YP_007486129.1| - 0.2 11.1 12.2 0.027 13.9 1.4 2.3 2 0 0 2 2 2 0 Septum formation initiator KxDL PF10241.4 gi|452206007|ref|YP_007486129.1| - 0.31 10.9 3.7 1.3 8.9 0.1 2.3 2 0 0 2 2 2 0 Uncharacterized conserved protein KLRAQ PF10205.4 gi|452206007|ref|YP_007486129.1| - 0.35 10.9 7.8 3.7 7.6 0.2 2.4 2 0 0 2 2 2 0 Predicted coiled-coil domain-containing protein CDC37_N PF03234.9 gi|452206007|ref|YP_007486129.1| - 0.56 10.5 6.2 2.6 8.3 1.6 2.2 2 0 0 2 2 2 0 Cdc37 N terminal kinase binding bZIP_1 PF00170.16 gi|452206007|ref|YP_007486129.1| - 0.98 9.4 6.4 0.41 10.6 0.7 2.3 2 0 0 2 2 2 0 bZIP transcription factor TMF_DNA_bd PF12329.3 gi|452206007|ref|YP_007486129.1| - 1.2 9.0 10.2 2.7 7.8 0.8 2.3 2 0 0 2 2 2 0 TATA element modulatory factor 1 DNA binding SlyX PF04102.7 gi|452206007|ref|YP_007486129.1| - 1.4 9.3 8.4 1.3 9.4 0.8 2.5 2 0 0 2 2 2 0 SlyX TAT_signal PF10518.4 gi|452206007|ref|YP_007486129.1| - 1.9 8.6 7.6 9 6.5 5.3 2.3 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Med9 PF07544.8 gi|452206007|ref|YP_007486129.1| - 2.5 7.9 7.6 1 9.1 0.3 2.6 2 0 0 2 2 2 0 RNA polymerase II transcription mediator complex subunit 9 Ax_dynein_light PF10211.4 gi|452206007|ref|YP_007486129.1| - 3 7.6 13.1 3.5 7.4 0.3 2.2 2 0 0 2 2 2 0 Axonemal dynein light chain CASP_C PF08172.7 gi|452206007|ref|YP_007486129.1| - 4.2 6.3 8.6 4.3 6.2 1.1 2.5 2 0 0 2 2 2 0 CASP C terminal DASH_Spc34 PF08657.5 gi|452206007|ref|YP_007486129.1| - 4.7 6.8 13.0 13 5.3 0.3 2.4 2 0 0 2 2 2 0 DASH complex subunit Spc34 ADIP PF11559.3 gi|452206007|ref|YP_007486129.1| - 7.7 6.3 13.8 2.2 8.1 0.7 2.3 2 0 0 2 2 2 0 Afadin- and alpha -actinin-Binding SlyX PF04102.7 gi|452206009|ref|YP_007486131.1| - 2.6e-06 27.7 1.1 5e-05 23.5 0.4 2.1 1 1 1 2 2 2 1 SlyX CENP-F_leu_zip PF10473.4 gi|452206009|ref|YP_007486131.1| - 9e-06 25.5 0.9 9.5e-06 25.5 0.6 1.1 1 0 0 1 1 1 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 TMF_DNA_bd PF12329.3 gi|452206009|ref|YP_007486131.1| - 0.00091 18.9 0.7 0.0062 16.3 0.5 2.1 1 1 0 1 1 1 1 TATA element modulatory factor 1 DNA binding CENP-Q PF13094.1 gi|452206009|ref|YP_007486131.1| - 0.0046 16.9 1.1 0.0051 16.8 0.7 1.1 1 0 0 1 1 1 1 CENP-Q, a CENPA-CAD centromere complex subunit DUF3552 PF12072.3 gi|452206009|ref|YP_007486131.1| - 0.0057 15.8 2.0 0.006 15.8 1.4 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF3552) ADIP PF11559.3 gi|452206009|ref|YP_007486131.1| - 0.0061 16.4 2.1 0.13 12.1 0.3 1.9 1 1 1 2 2 2 2 Afadin- and alpha -actinin-Binding DUF869 PF05911.6 gi|452206009|ref|YP_007486131.1| - 0.0064 14.7 0.3 0.0066 14.7 0.2 1.1 1 0 0 1 1 1 1 Plant protein of unknown function (DUF869) Reo_sigmaC PF04582.7 gi|452206009|ref|YP_007486131.1| - 0.0081 15.3 0.3 0.0093 15.1 0.2 1.1 1 0 0 1 1 1 1 Reovirus sigma C capsid protein ATG16 PF08614.6 gi|452206009|ref|YP_007486131.1| - 0.0085 15.9 1.5 0.0085 15.9 1.1 1.6 1 1 1 2 2 2 1 Autophagy protein 16 (ATG16) Atg14 PF10186.4 gi|452206009|ref|YP_007486131.1| - 0.0094 14.9 0.7 0.011 14.6 0.5 1.0 1 0 0 1 1 1 1 UV radiation resistance protein and autophagy-related subunit 14 Tropomyosin PF00261.15 gi|452206009|ref|YP_007486131.1| - 0.011 14.7 0.4 0.014 14.4 0.3 1.2 1 0 0 1 1 1 0 Tropomyosin DinB_2 PF12867.2 gi|452206009|ref|YP_007486131.1| - 0.023 15.0 1.3 0.17 12.2 0.6 1.9 1 1 0 2 2 2 0 DinB superfamily Uds1 PF15456.1 gi|452206009|ref|YP_007486131.1| - 0.028 14.4 1.6 0.1 12.5 1.1 1.8 1 1 0 1 1 1 0 Up-regulated During Septation XhlA PF10779.4 gi|452206009|ref|YP_007486131.1| - 0.04 13.8 0.7 0.15 11.9 0.5 2.0 1 1 0 1 1 1 0 Haemolysin XhlA TPR_MLP1_2 PF07926.7 gi|452206009|ref|YP_007486131.1| - 0.047 13.4 0.2 0.074 12.7 0.2 1.3 1 0 0 1 1 1 0 TPR/MLP1/MLP2-like protein GAS PF13851.1 gi|452206009|ref|YP_007486131.1| - 0.049 12.8 0.1 0.057 12.6 0.1 1.1 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding Sec3_C PF09763.4 gi|452206009|ref|YP_007486131.1| - 0.054 11.6 0.0 0.063 11.4 0.0 1.0 1 0 0 1 1 1 0 Exocyst complex component Sec3 IncA PF04156.9 gi|452206009|ref|YP_007486131.1| - 0.067 12.7 0.5 0.078 12.5 0.3 1.2 1 0 0 1 1 1 0 IncA protein Spc7 PF08317.6 gi|452206009|ref|YP_007486131.1| - 0.071 11.7 1.0 0.071 11.7 0.7 1.0 1 0 0 1 1 1 0 Spc7 kinetochore protein Med21 PF11221.3 gi|452206009|ref|YP_007486131.1| - 0.072 13.0 0.1 0.1 12.5 0.1 1.3 1 0 0 1 1 1 0 Subunit 21 of Mediator complex Striatin PF08232.7 gi|452206009|ref|YP_007486131.1| - 0.076 13.3 0.7 0.098 12.9 0.5 1.2 1 0 0 1 1 1 0 Striatin family Cortex-I_coil PF09304.5 gi|452206009|ref|YP_007486131.1| - 0.08 12.9 2.2 0.56 10.2 0.9 2.0 1 1 1 2 2 2 0 Cortexillin I, coiled coil DUF2570 PF10828.3 gi|452206009|ref|YP_007486131.1| - 0.1 12.2 1.4 0.11 12.0 0.7 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2570) Acyl-CoA_dh_2 PF08028.6 gi|452206009|ref|YP_007486131.1| - 0.14 12.3 2.8 0.16 12.2 1.9 1.3 1 1 0 1 1 1 0 Acyl-CoA dehydrogenase, C-terminal domain DivIC PF04977.10 gi|452206009|ref|YP_007486131.1| - 0.2 11.1 2.2 8.9 5.8 0.1 2.3 1 1 1 2 2 2 0 Septum formation initiator DUF4407 PF14362.1 gi|452206009|ref|YP_007486131.1| - 1.5 7.7 6.8 2.7 6.8 4.7 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) DUF4330 PF14221.1 gi|452206010|ref|YP_007486132.1| - 0.029 14.2 0.6 0.029 14.2 0.4 2.6 3 0 0 3 3 3 0 Domain of unknown function (DUF4330) Tubulin PF00091.20 gi|452206011|ref|YP_007486133.1| - 5e-35 121.2 1.2 2e-34 119.3 0.9 2.0 1 1 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain FtsZ_C PF12327.3 gi|452206011|ref|YP_007486133.1| - 2.8e-34 117.0 0.2 2.8e-34 117.0 0.1 2.7 3 1 0 3 3 3 1 FtsZ family, C-terminal domain Cpn10 PF00166.16 gi|452206011|ref|YP_007486133.1| - 0.035 14.0 1.1 11 6.0 0.1 2.8 2 0 0 2 2 2 0 Chaperonin 10 Kd subunit VWA_2 PF13519.1 gi|452206011|ref|YP_007486133.1| - 0.042 13.9 3.6 2 8.5 0.5 2.3 2 0 0 2 2 2 0 von Willebrand factor type A domain ThiF PF00899.16 gi|452206011|ref|YP_007486133.1| - 0.09 12.5 2.1 0.22 11.3 1.3 1.8 1 1 0 1 1 1 0 ThiF family Tubulin_2 PF13809.1 gi|452206011|ref|YP_007486133.1| - 4.6 6.0 8.1 0.81 8.5 0.9 2.8 2 1 1 3 3 3 0 Tubulin like CbtB PF09489.5 gi|452206012|ref|YP_007486134.1| - 0.16 11.8 0.2 0.19 11.6 0.1 1.2 1 0 0 1 1 1 0 Probable cobalt transporter subunit (CbtB) Spt5-NGN PF03439.8 gi|452206013|ref|YP_007486135.1| - 5.1e-23 80.6 0.0 8.2e-23 79.9 0.0 1.3 1 0 0 1 1 1 1 Early transcription elongation factor of RNA pol II, NGN section KOW PF00467.24 gi|452206013|ref|YP_007486135.1| - 2.1e-07 30.3 0.6 4.6e-07 29.3 0.1 1.8 2 0 0 2 2 2 1 KOW motif NusG PF02357.14 gi|452206013|ref|YP_007486135.1| - 0.0039 17.3 0.0 0.069 13.4 0.0 2.2 1 1 0 1 1 1 1 Transcription termination factor nusG PHP_C PF13263.1 gi|452206014|ref|YP_007486136.1| - 2.1e-14 52.7 0.1 4e-14 51.8 0.1 1.5 1 0 0 1 1 1 1 PHP-associated PHP PF02811.14 gi|452206014|ref|YP_007486136.1| - 0.01 15.6 0.0 0.013 15.2 0.0 1.1 1 0 0 1 1 1 0 PHP domain DUF457 PF04307.9 gi|452206015|ref|YP_007486137.1| - 4.1e-18 65.2 6.1 5.2e-18 64.8 4.2 1.1 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) CinA PF02464.12 gi|452206016|ref|YP_007486138.1| - 1.6e-55 186.7 0.2 1.8e-55 186.6 0.1 1.0 1 0 0 1 1 1 1 Competence-damaged protein Lin0512_fam PF09585.5 gi|452206016|ref|YP_007486138.1| - 0.14 11.7 1.4 0.63 9.6 0.8 2.3 1 1 1 2 2 2 0 Conserved hypothetical protein (Lin0512_fam) IGPD PF00475.13 gi|452206017|ref|YP_007486139.1| - 1.9e-61 206.1 0.6 3e-61 205.5 0.4 1.3 1 0 0 1 1 1 1 Imidazoleglycerol-phosphate dehydratase Yip1 PF04893.12 gi|452206018|ref|YP_007486140.1| - 0.00035 20.1 3.1 0.00043 19.8 2.1 1.1 1 0 0 1 1 1 1 Yip1 domain DUF3487 PF11990.3 gi|452206018|ref|YP_007486140.1| - 0.12 11.7 1.5 0.14 11.5 0.3 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF3487) DUF423 PF04241.10 gi|452206018|ref|YP_007486140.1| - 3.8 7.4 7.9 42 4.1 3.9 2.7 1 1 1 2 2 2 0 Protein of unknown function (DUF423) Chlor_dismutase PF06778.7 gi|452206019|ref|YP_007486141.1| - 8.1e-58 195.3 0.0 1.3e-57 194.5 0.0 1.4 1 0 0 1 1 1 1 Chlorite dismutase ABM PF03992.11 gi|452206019|ref|YP_007486141.1| - 2.5e-12 46.6 8.2 7.4e-10 38.7 0.0 3.8 4 0 0 4 4 4 3 Antibiotic biosynthesis monooxygenase Peptidase_M50 PF02163.17 gi|452206022|ref|YP_007486144.1| - 5.3e-29 100.5 0.0 1.3e-28 99.2 0.0 1.6 1 1 0 1 1 1 1 Peptidase family M50 PDZ_2 PF13180.1 gi|452206022|ref|YP_007486144.1| - 6.4e-09 35.5 0.1 0.00042 20.1 0.1 3.4 2 1 0 3 3 3 2 PDZ domain Tricorn_PDZ PF14685.1 gi|452206022|ref|YP_007486144.1| - 1.4e-06 27.9 0.2 0.016 14.9 0.0 3.1 3 0 0 3 3 3 2 Tricorn protease PDZ domain PDZ PF00595.19 gi|452206022|ref|YP_007486144.1| - 3.7e-05 23.8 0.1 0.00016 21.7 0.1 2.0 2 0 0 2 2 2 1 PDZ domain (Also known as DHR or GLGF) tRNA-synt_1f PF01921.13 gi|452206023|ref|YP_007486145.1| - 6.4e-101 337.6 0.0 1.2e-100 336.7 0.0 1.4 2 0 0 2 2 2 1 tRNA synthetases class I (K) tRNA-synt_1g PF09334.6 gi|452206023|ref|YP_007486145.1| - 1e-08 34.2 0.0 3.1e-06 26.1 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1e PF01406.14 gi|452206023|ref|YP_007486145.1| - 0.014 14.5 0.0 0.035 13.2 0.0 1.6 2 0 0 2 2 2 0 tRNA synthetases class I (C) catalytic domain AA_kinase PF00696.23 gi|452206024|ref|YP_007486146.1| - 3.9e-31 108.4 3.1 4.7e-31 108.1 2.1 1.1 1 0 0 1 1 1 1 Amino acid kinase family Robl_LC7 PF03259.12 gi|452206024|ref|YP_007486146.1| - 0.15 11.6 1.2 3.1 7.4 0.1 2.5 2 0 0 2 2 2 0 Roadblock/LC7 domain MoaE PF02391.12 gi|452206025|ref|YP_007486147.1| - 4.7e-24 84.4 0.6 8.7e-24 83.5 0.4 1.4 1 0 0 1 1 1 1 MoaE protein Peptidase_M50 PF02163.17 gi|452206027|ref|YP_007486149.1| - 8.4e-17 60.7 4.9 8.1e-16 57.5 2.2 2.6 1 1 1 2 2 2 1 Peptidase family M50 AIRS PF00586.19 gi|452206028|ref|YP_007486150.1| - 1.3e-14 54.1 2.5 3.1e-14 52.9 1.7 1.6 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain AIRS_C PF02769.17 gi|452206028|ref|YP_007486150.1| - 3.1e-10 40.2 0.1 4.6e-10 39.7 0.0 1.2 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain Ribosomal_S19e PF01090.14 gi|452206029|ref|YP_007486151.1| - 4.3e-47 159.0 0.0 4.9e-47 158.8 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S19e GntR PF00392.16 gi|452206029|ref|YP_007486151.1| - 0.018 14.4 0.3 0.63 9.5 0.0 2.7 2 1 0 2 2 2 0 Bacterial regulatory proteins, gntR family Mrr_N PF14338.1 gi|452206029|ref|YP_007486151.1| - 0.066 13.3 0.0 1.4 9.0 0.0 2.2 2 0 0 2 2 2 0 Mrr N-terminal domain PMT_2 PF13231.1 gi|452206030|ref|YP_007486152.1| - 4.6e-11 42.8 9.1 4.6e-11 42.8 6.3 2.2 2 0 0 2 2 2 1 Dolichyl-phosphate-mannose-protein mannosyltransferase PMT PF02366.13 gi|452206030|ref|YP_007486152.1| - 0.00025 20.5 5.5 0.00045 19.6 3.8 1.4 1 0 0 1 1 1 1 Dolichyl-phosphate-mannose-protein mannosyltransferase ATP-grasp PF02222.17 gi|452206031|ref|YP_007486153.1| - 4.9e-48 162.7 0.0 7.4e-48 162.1 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_4 PF13535.1 gi|452206031|ref|YP_007486153.1| - 1.6e-18 67.1 0.0 2.7e-18 66.3 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|452206031|ref|YP_007486153.1| - 1.2e-06 27.4 0.0 5.3e-06 25.4 0.0 1.8 2 0 0 2 2 2 1 ATP-grasp in the biosynthetic pathway with Ter operon 2-Hacid_dh_C PF02826.14 gi|452206031|ref|YP_007486153.1| - 0.00014 21.0 0.0 0.00026 20.2 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Dala_Dala_lig_C PF07478.8 gi|452206031|ref|YP_007486153.1| - 0.00075 18.9 0.0 0.0025 17.2 0.0 1.8 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus ATP-grasp_3 PF02655.9 gi|452206031|ref|YP_007486153.1| - 0.0012 18.7 0.0 0.0036 17.1 0.0 1.8 2 0 0 2 2 2 1 ATP-grasp domain RimK PF08443.6 gi|452206031|ref|YP_007486153.1| - 0.078 12.4 0.0 0.21 11.0 0.0 1.7 1 1 0 1 1 1 0 RimK-like ATP-grasp domain NosL PF05573.7 gi|452206032|ref|YP_007486154.1| - 1.9e-11 43.8 0.0 2.8e-11 43.3 0.0 1.1 1 0 0 1 1 1 1 NosL Cytochrom_C550 PF14495.1 gi|452206032|ref|YP_007486154.1| - 0.025 14.0 0.0 0.037 13.4 0.0 1.3 1 0 0 1 1 1 0 Cytochrome c-550 domain AIRC PF00731.15 gi|452206033|ref|YP_007486155.1| - 8e-52 174.5 0.0 9.5e-52 174.2 0.0 1.1 1 0 0 1 1 1 1 AIR carboxylase Met_10 PF02475.11 gi|452206034|ref|YP_007486156.1| - 2.9e-47 160.8 0.0 3.7e-47 160.5 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_18 PF12847.2 gi|452206034|ref|YP_007486156.1| - 2.1e-08 34.7 0.1 6.3e-08 33.1 0.0 1.8 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|452206034|ref|YP_007486156.1| - 2.9e-06 27.3 0.5 2.9e-06 27.3 0.4 2.0 2 2 0 2 2 2 1 Methyltransferase domain Methyltransf_15 PF09445.5 gi|452206034|ref|YP_007486156.1| - 9.7e-05 21.9 0.0 0.00013 21.5 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase MTS PF05175.9 gi|452206034|ref|YP_007486156.1| - 0.00067 19.0 0.0 0.0018 17.7 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase small domain PrmA PF06325.8 gi|452206034|ref|YP_007486156.1| - 0.0017 17.5 0.1 0.0047 16.0 0.0 1.6 2 0 0 2 2 2 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_31 PF13847.1 gi|452206034|ref|YP_007486156.1| - 0.0051 16.4 0.0 0.0077 15.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|452206034|ref|YP_007486156.1| - 0.012 14.6 0.0 0.018 14.1 0.0 1.1 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase MoCF_biosynth PF00994.19 gi|452206034|ref|YP_007486156.1| - 0.019 14.3 0.1 0.035 13.4 0.1 1.5 1 0 0 1 1 1 0 Probable molybdopterin binding domain DNA_methylase PF00145.12 gi|452206034|ref|YP_007486156.1| - 0.02 14.0 0.0 0.026 13.6 0.0 1.1 1 0 0 1 1 1 0 C-5 cytosine-specific DNA methylase DUF2795 PF11387.3 gi|452206034|ref|YP_007486156.1| - 0.027 14.3 0.4 8.9 6.2 0.0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2795) Methyltransf_25 PF13649.1 gi|452206034|ref|YP_007486156.1| - 0.085 13.2 0.0 0.23 11.8 0.0 1.7 1 0 0 1 1 1 0 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|452206034|ref|YP_007486156.1| - 0.099 12.0 0.1 0.16 11.3 0.0 1.2 1 0 0 1 1 1 0 Conserved hypothetical protein 95 NMD3 PF04981.8 gi|452206035|ref|YP_007486157.1| - 2.7e-68 229.6 0.0 3.2e-68 229.3 0.0 1.1 1 0 0 1 1 1 1 NMD3 family DZR PF12773.2 gi|452206035|ref|YP_007486157.1| - 0.0082 15.9 4.4 0.22 11.3 1.7 3.0 2 1 0 2 2 2 1 Double zinc ribbon FYVE PF01363.16 gi|452206035|ref|YP_007486157.1| - 0.02 14.7 0.3 0.31 10.9 0.2 2.3 2 0 0 2 2 2 0 FYVE zinc finger Nudix_N_2 PF14803.1 gi|452206035|ref|YP_007486157.1| - 0.021 14.4 6.8 4.8 6.9 0.0 3.8 3 0 0 3 3 3 0 Nudix N-terminal zf-FPG_IleRS PF06827.9 gi|452206035|ref|YP_007486157.1| - 0.045 13.4 3.1 1.4 8.6 0.1 2.9 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS zinc_ribbon_2 PF13240.1 gi|452206035|ref|YP_007486157.1| - 0.061 12.8 5.1 1.6 8.3 0.1 3.1 3 0 0 3 3 3 0 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|452206035|ref|YP_007486157.1| - 0.061 12.5 4.5 2.1 7.6 0.1 3.2 3 0 0 3 3 3 0 zinc-ribbon domain zf-NADH-PPase PF09297.6 gi|452206035|ref|YP_007486157.1| - 2.4 7.7 11.4 1.2 8.7 0.3 2.9 3 0 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain DUF35_N PF12172.3 gi|452206035|ref|YP_007486157.1| - 5.6 6.9 9.5 10 6.1 0.1 3.7 4 0 0 4 4 4 0 Rubredoxin-like zinc ribbon domain (DUF35_N) MFS_1 PF07690.11 gi|452206036|ref|YP_007486158.1| - 7.6e-36 123.5 76.7 9.4e-29 100.2 33.1 1.8 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.2 gi|452206036|ref|YP_007486158.1| - 0.5 10.1 6.6 5.9 6.7 0.0 3.8 4 0 0 4 4 4 0 MFS_1 like family Lum_binding PF00677.12 gi|452206037|ref|YP_007486159.1| - 2.5e-41 139.4 0.0 2e-21 75.6 0.0 2.0 2 0 0 2 2 2 2 Lumazine binding domain HAS-barrel PF09378.5 gi|452206039|ref|YP_007486161.1| - 0.046 13.6 0.8 0.056 13.3 0.1 1.4 2 0 0 2 2 2 0 HAS barrel domain PseudoU_synth_1 PF01416.15 gi|452206040|ref|YP_007486162.1| - 9.7e-17 61.3 0.0 2.2e-08 34.4 0.0 2.2 2 0 0 2 2 2 2 tRNA pseudouridine synthase Peptidase_M3 PF01432.15 gi|452206041|ref|YP_007486163.1| - 1.9e-65 221.7 3.4 1.9e-65 221.7 2.4 1.8 2 0 0 2 2 2 1 Peptidase family M3 Peptidase_M3_N PF08439.5 gi|452206041|ref|YP_007486163.1| - 2.7e-23 81.7 2.0 2.3e-22 78.7 0.3 3.3 3 0 0 3 3 3 1 Oligopeptidase F Peptidase_M64 PF09471.5 gi|452206041|ref|YP_007486163.1| - 0.025 14.1 0.3 0.057 13.0 0.2 1.5 1 0 0 1 1 1 0 IgA Peptidase M64 AAA PF00004.24 gi|452206042|ref|YP_007486164.1| - 6.6e-44 149.3 1.5 1.7e-43 147.9 0.1 2.1 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_2 PF07724.9 gi|452206042|ref|YP_007486164.1| - 5.3e-09 36.2 0.0 1.2e-08 35.1 0.0 1.6 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_5 PF07728.9 gi|452206042|ref|YP_007486164.1| - 1.3e-07 31.4 0.1 6.4e-07 29.1 0.1 2.2 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) RuvB_N PF05496.7 gi|452206042|ref|YP_007486164.1| - 2.5e-06 26.7 0.1 7.7e-06 25.1 0.0 1.8 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_16 PF13191.1 gi|452206042|ref|YP_007486164.1| - 3.4e-06 27.1 3.3 0.00023 21.1 0.1 3.3 2 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|452206042|ref|YP_007486164.1| - 4.1e-06 26.9 0.2 0.00032 20.8 0.2 2.6 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|452206042|ref|YP_007486164.1| - 9.2e-06 26.4 0.1 3e-05 24.8 0.0 2.0 2 0 0 2 2 1 1 AAA domain AAA_33 PF13671.1 gi|452206042|ref|YP_007486164.1| - 0.00027 20.8 0.1 0.0041 16.9 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|452206042|ref|YP_007486164.1| - 0.00093 18.9 0.1 0.0023 17.6 0.1 1.6 1 0 0 1 1 1 1 Part of AAA domain AAA_14 PF13173.1 gi|452206042|ref|YP_007486164.1| - 0.0012 18.7 0.0 0.0023 17.8 0.0 1.5 1 0 0 1 1 1 1 AAA domain TIP49 PF06068.8 gi|452206042|ref|YP_007486164.1| - 0.0025 16.6 0.0 0.0053 15.5 0.0 1.5 1 0 0 1 1 1 1 TIP49 C-terminus DUF815 PF05673.8 gi|452206042|ref|YP_007486164.1| - 0.0032 16.4 0.0 0.0057 15.6 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_18 PF13238.1 gi|452206042|ref|YP_007486164.1| - 0.0039 17.4 0.1 0.017 15.4 0.0 2.0 2 0 0 2 2 2 1 AAA domain Sigma54_activat PF00158.21 gi|452206042|ref|YP_007486164.1| - 0.0039 16.6 0.7 0.037 13.5 0.1 2.7 2 1 0 2 2 2 1 Sigma-54 interaction domain Mg_chelatase PF01078.16 gi|452206042|ref|YP_007486164.1| - 0.004 16.3 0.1 0.0082 15.3 0.1 1.4 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI Zeta_toxin PF06414.7 gi|452206042|ref|YP_007486164.1| - 0.004 16.2 0.0 0.0091 15.1 0.0 1.6 1 0 0 1 1 1 1 Zeta toxin IstB_IS21 PF01695.12 gi|452206042|ref|YP_007486164.1| - 0.0056 16.1 0.1 0.013 14.9 0.0 1.7 2 0 0 2 2 1 1 IstB-like ATP binding protein NACHT PF05729.7 gi|452206042|ref|YP_007486164.1| - 0.0069 16.0 0.2 0.19 11.3 0.0 2.3 2 0 0 2 2 2 1 NACHT domain AAA_28 PF13521.1 gi|452206042|ref|YP_007486164.1| - 0.0095 15.9 0.6 0.026 14.5 0.0 2.1 2 1 1 3 3 2 1 AAA domain NTPase_1 PF03266.10 gi|452206042|ref|YP_007486164.1| - 0.0098 15.6 3.6 0.063 12.9 0.1 3.1 4 1 0 4 4 3 1 NTPase AAA_3 PF07726.6 gi|452206042|ref|YP_007486164.1| - 0.01 15.4 0.0 0.022 14.3 0.0 1.7 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) FlaC_arch PF05377.6 gi|452206042|ref|YP_007486164.1| - 0.012 15.4 0.6 1.5 8.7 0.2 2.8 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) IncA PF04156.9 gi|452206042|ref|YP_007486164.1| - 0.013 15.0 2.0 0.013 15.0 1.4 2.1 3 0 0 3 3 2 0 IncA protein RNA_helicase PF00910.17 gi|452206042|ref|YP_007486164.1| - 0.019 15.1 0.0 0.048 13.8 0.0 1.7 1 0 0 1 1 1 0 RNA helicase AAA_11 PF13086.1 gi|452206042|ref|YP_007486164.1| - 0.019 14.5 0.1 0.1 12.1 0.0 2.0 2 0 0 2 2 2 0 AAA domain CPT PF07931.7 gi|452206042|ref|YP_007486164.1| - 0.026 14.1 0.0 0.046 13.3 0.0 1.5 1 0 0 1 1 1 0 Chloramphenicol phosphotransferase-like protein Torsin PF06309.6 gi|452206042|ref|YP_007486164.1| - 0.036 13.9 0.0 0.071 12.9 0.0 1.4 1 0 0 1 1 1 0 Torsin Nsp1_C PF05064.8 gi|452206042|ref|YP_007486164.1| - 0.05 13.2 2.8 0.07 12.7 0.7 2.0 2 0 0 2 2 2 0 Nsp1-like C-terminal region Sigma54_activ_2 PF14532.1 gi|452206042|ref|YP_007486164.1| - 0.053 13.5 0.0 0.16 11.9 0.0 1.8 1 0 0 1 1 1 0 Sigma-54 interaction domain DivIC PF04977.10 gi|452206042|ref|YP_007486164.1| - 0.067 12.6 2.3 0.14 11.6 0.8 2.2 2 0 0 2 2 1 0 Septum formation initiator bZIP_2 PF07716.10 gi|452206042|ref|YP_007486164.1| - 0.07 12.9 0.3 0.19 11.6 0.2 1.8 1 0 0 1 1 1 0 Basic region leucine zipper ResIII PF04851.10 gi|452206042|ref|YP_007486164.1| - 0.083 12.7 0.1 0.41 10.4 0.0 2.0 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit APG6 PF04111.7 gi|452206042|ref|YP_007486164.1| - 0.084 11.9 1.3 0.16 10.9 0.9 1.5 1 0 0 1 1 1 0 Autophagy protein Apg6 NB-ARC PF00931.17 gi|452206042|ref|YP_007486164.1| - 0.097 11.5 0.0 0.19 10.5 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain AAA_24 PF13479.1 gi|452206042|ref|YP_007486164.1| - 0.11 12.0 1.1 0.36 10.3 0.1 2.2 1 1 1 2 2 2 0 AAA domain DUF972 PF06156.8 gi|452206042|ref|YP_007486164.1| - 0.13 12.5 2.6 0.28 11.5 0.8 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF972) AAA_25 PF13481.1 gi|452206042|ref|YP_007486164.1| - 0.23 10.8 7.6 0.44 9.9 0.1 3.2 2 1 1 4 4 3 0 AAA domain KaiC PF06745.8 gi|452206042|ref|YP_007486164.1| - 0.41 9.7 4.7 0.44 9.6 0.0 2.6 2 1 0 3 3 3 0 KaiC DUF4345 PF14248.1 gi|452206043|ref|YP_007486165.1| - 0.036 13.5 1.5 0.042 13.2 1.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4345) Bacteriocin_IId PF09221.5 gi|452206043|ref|YP_007486165.1| - 0.054 13.4 1.2 6.7 6.7 0.1 2.1 1 1 1 2 2 2 0 Bacteriocin class IId cyclical uberolysin-like DUF1469 PF07332.6 gi|452206043|ref|YP_007486165.1| - 0.31 10.7 6.5 0.42 10.3 4.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) DUF202 PF02656.10 gi|452206043|ref|YP_007486165.1| - 8 6.7 9.9 4.1 7.7 1.8 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF202) Zn-ribbon_8 PF09723.5 gi|452206044|ref|YP_007486166.1| - 0.0045 16.9 2.9 0.005 16.7 0.3 2.0 2 0 0 2 2 2 1 Zinc ribbon domain Mu-like_Com PF10122.4 gi|452206044|ref|YP_007486166.1| - 0.031 13.3 0.0 0.041 12.9 0.0 1.3 1 0 0 1 1 1 0 Mu-like prophage protein Com TF_Zn_Ribbon PF08271.7 gi|452206044|ref|YP_007486166.1| - 0.17 11.1 1.8 0.44 9.8 1.2 1.7 1 1 0 1 1 1 0 TFIIB zinc-binding Prim_Zn_Ribbon PF08273.7 gi|452206044|ref|YP_007486166.1| - 0.2 11.7 1.0 0.32 11.1 0.1 1.8 2 0 0 2 2 2 0 Zinc-binding domain of primase-helicase Zn_Tnp_IS1 PF03811.8 gi|452206044|ref|YP_007486166.1| - 1.1 8.7 4.5 4.9 6.7 0.1 2.9 3 0 0 3 3 3 0 InsA N-terminal domain Aminotran_4 PF01063.14 gi|452206045|ref|YP_007486167.1| - 9.8e-42 142.9 0.0 1.2e-41 142.7 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class IV Methyltransf_11 PF08241.7 gi|452206046|ref|YP_007486168.1| - 2.1e-24 85.7 0.0 5.7e-24 84.4 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|452206046|ref|YP_007486168.1| - 5.5e-17 61.9 0.0 7.2e-17 61.5 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|452206046|ref|YP_007486168.1| - 6.6e-17 61.3 0.0 7.4e-15 54.7 0.0 2.0 1 1 1 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_25 PF13649.1 gi|452206046|ref|YP_007486168.1| - 4.6e-16 59.0 0.0 7.4e-16 58.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|452206046|ref|YP_007486168.1| - 7.6e-16 58.0 0.0 9.6e-16 57.7 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|452206046|ref|YP_007486168.1| - 1.5e-14 54.2 0.0 2.2e-14 53.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|452206046|ref|YP_007486168.1| - 2.3e-12 47.4 0.0 3.7e-12 46.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|452206046|ref|YP_007486168.1| - 9e-11 41.8 0.1 3.9e-10 39.7 0.1 2.0 1 1 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|452206046|ref|YP_007486168.1| - 6.3e-05 22.5 0.0 8.4e-05 22.1 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MetW PF07021.7 gi|452206046|ref|YP_007486168.1| - 0.00018 20.9 0.0 0.00026 20.4 0.0 1.1 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW CMAS PF02353.15 gi|452206046|ref|YP_007486168.1| - 0.00064 18.8 0.0 0.0008 18.5 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase RrnaAD PF00398.15 gi|452206046|ref|YP_007486168.1| - 0.0017 17.4 0.0 0.0022 17.0 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase MTS PF05175.9 gi|452206046|ref|YP_007486168.1| - 0.008 15.5 0.0 0.021 14.1 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase small domain Methyltransf_9 PF08003.6 gi|452206046|ref|YP_007486168.1| - 0.018 13.7 0.0 0.025 13.2 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) Methyltransf_2 PF00891.13 gi|452206046|ref|YP_007486168.1| - 0.13 11.4 0.0 0.16 11.0 0.0 1.3 1 0 0 1 1 1 0 O-methyltransferase DUF1628 PF07790.6 gi|452206047|ref|YP_007486169.1| - 1.9e-10 41.3 0.6 5.4e-10 39.8 0.3 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF1628) HTH_IclR PF09339.5 gi|452206049|ref|YP_007486171.1| - 0.031 13.8 0.0 0.3 10.7 0.0 2.2 2 0 0 2 2 2 0 IclR helix-turn-helix domain ETF PF01012.16 gi|452206050|ref|YP_007486172.1| - 4e-33 114.4 7.0 6.1e-33 113.8 4.9 1.3 1 0 0 1 1 1 1 Electron transfer flavoprotein domain CoA_binding_2 PF13380.1 gi|452206050|ref|YP_007486172.1| - 0.11 12.7 0.3 0.28 11.3 0.2 1.8 1 0 0 1 1 1 0 CoA binding domain Usp PF00582.21 gi|452206050|ref|YP_007486172.1| - 0.21 11.7 9.2 0.093 12.9 3.5 2.4 1 1 1 2 2 2 0 Universal stress protein family ETF_alpha PF00766.14 gi|452206051|ref|YP_007486173.1| - 6.8e-36 121.7 0.6 1.2e-35 121.0 0.1 1.7 2 0 0 2 2 2 1 Electron transfer flavoprotein FAD-binding domain ETF PF01012.16 gi|452206051|ref|YP_007486173.1| - 1.8e-26 92.8 1.8 1.8e-26 92.8 1.3 2.0 2 0 0 2 2 2 1 Electron transfer flavoprotein domain DOMON PF03351.12 gi|452206051|ref|YP_007486173.1| - 0.094 12.6 0.1 0.17 11.8 0.1 1.3 1 0 0 1 1 1 0 DOMON domain IGPS PF00218.16 gi|452206052|ref|YP_007486174.1| - 1.2e-64 217.8 0.0 1.5e-64 217.5 0.0 1.0 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase FMN_dh PF01070.13 gi|452206052|ref|YP_007486174.1| - 4.6e-08 32.3 2.7 7.4e-08 31.6 1.9 1.3 1 0 0 1 1 1 1 FMN-dependent dehydrogenase QRPTase_C PF01729.14 gi|452206052|ref|YP_007486174.1| - 2.8e-05 23.6 0.2 4.5e-05 23.0 0.1 1.3 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain His_biosynth PF00977.16 gi|452206052|ref|YP_007486174.1| - 4e-05 22.9 0.1 0.00063 19.0 0.1 2.5 2 1 1 3 3 3 1 Histidine biosynthesis protein NanE PF04131.9 gi|452206052|ref|YP_007486174.1| - 0.00024 20.1 1.2 0.0012 17.8 0.2 2.3 1 1 1 2 2 2 1 Putative N-acetylmannosamine-6-phosphate epimerase NMO PF03060.10 gi|452206052|ref|YP_007486174.1| - 0.0011 18.1 1.9 0.0017 17.5 1.3 1.3 1 0 0 1 1 1 1 Nitronate monooxygenase Trp_syntA PF00290.15 gi|452206052|ref|YP_007486174.1| - 0.0037 15.8 0.1 0.0081 14.7 0.0 1.5 1 0 0 1 1 1 1 Tryptophan synthase alpha chain EAL PF00563.15 gi|452206052|ref|YP_007486174.1| - 0.0093 15.4 0.1 0.015 14.8 0.1 1.3 1 0 0 1 1 1 1 EAL domain IMPDH PF00478.20 gi|452206052|ref|YP_007486174.1| - 0.023 13.6 0.8 0.027 13.3 0.1 1.4 2 0 0 2 2 2 0 IMP dehydrogenase / GMP reductase domain AP_endonuc_2 PF01261.19 gi|452206052|ref|YP_007486174.1| - 0.024 13.9 0.2 0.2 10.9 0.0 2.2 2 0 0 2 2 2 0 Xylose isomerase-like TIM barrel PcrB PF01884.12 gi|452206052|ref|YP_007486174.1| - 0.025 13.8 0.2 0.04 13.1 0.2 1.3 1 0 0 1 1 1 0 PcrB family DHO_dh PF01180.16 gi|452206052|ref|YP_007486174.1| - 0.035 13.0 0.1 0.056 12.4 0.0 1.2 1 0 0 1 1 1 0 Dihydroorotate dehydrogenase ThiG PF05690.9 gi|452206052|ref|YP_007486174.1| - 0.17 10.9 2.9 0.29 10.1 1.2 2.1 1 1 1 2 2 2 0 Thiazole biosynthesis protein ThiG DUF2376 PF09550.5 gi|452206052|ref|YP_007486174.1| - 0.23 11.6 5.9 12 6.1 0.0 3.7 3 1 0 3 3 3 0 Conserved hypothetical phage protein (DUF2376) PALP PF00291.20 gi|452206053|ref|YP_007486175.1| - 1.8e-36 125.9 0.4 2.3e-36 125.5 0.3 1.2 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Trp_syntA PF00290.15 gi|452206054|ref|YP_007486176.1| - 1.7e-90 302.0 0.0 2.1e-90 301.8 0.0 1.0 1 0 0 1 1 1 1 Tryptophan synthase alpha chain PcrB PF01884.12 gi|452206054|ref|YP_007486176.1| - 0.0003 20.1 0.9 0.0007 18.9 0.4 1.7 2 0 0 2 2 2 1 PcrB family His_biosynth PF00977.16 gi|452206054|ref|YP_007486176.1| - 0.00094 18.5 0.1 0.0018 17.5 0.1 1.5 2 0 0 2 2 2 1 Histidine biosynthesis protein PA PF02225.17 gi|452206054|ref|YP_007486176.1| - 0.0034 17.0 0.3 2.9 7.6 0.0 2.4 2 0 0 2 2 2 2 PA domain ThiG PF05690.9 gi|452206054|ref|YP_007486176.1| - 0.0059 15.7 0.1 0.0091 15.1 0.1 1.3 1 0 0 1 1 1 1 Thiazole biosynthesis protein ThiG NanE PF04131.9 gi|452206054|ref|YP_007486176.1| - 0.026 13.4 0.1 0.17 10.8 0.0 2.1 2 0 0 2 2 2 0 Putative N-acetylmannosamine-6-phosphate epimerase FMN_dh PF01070.13 gi|452206054|ref|YP_007486176.1| - 0.15 10.8 0.8 1.3 7.7 0.4 2.1 1 1 1 2 2 2 0 FMN-dependent dehydrogenase DeoC PF01791.4 gi|452206055|ref|YP_007486177.1| - 4.9e-40 137.2 0.0 5.9e-40 137.0 0.0 1.1 1 0 0 1 1 1 1 DeoC/LacD family aldolase AP_endonuc_2 PF01261.19 gi|452206055|ref|YP_007486177.1| - 9.4e-05 21.7 0.5 0.00022 20.6 0.1 1.9 2 1 0 2 2 2 1 Xylose isomerase-like TIM barrel ThiG PF05690.9 gi|452206055|ref|YP_007486177.1| - 0.0049 15.9 0.1 0.012 14.7 0.0 1.7 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG CSD PF00313.17 gi|452206056|ref|YP_007486178.1| - 1.8e-19 69.2 0.1 1.9e-19 69.1 0.1 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain S1-like PF14444.1 gi|452206056|ref|YP_007486178.1| - 0.015 15.0 0.6 0.019 14.7 0.4 1.3 1 1 0 1 1 1 0 S1-like OB_RNB PF08206.6 gi|452206056|ref|YP_007486178.1| - 0.016 14.7 2.5 0.021 14.3 1.7 1.3 1 0 0 1 1 1 0 Ribonuclease B OB domain HTH_10 PF04967.7 gi|452206057|ref|YP_007486179.1| - 2.5e-19 68.5 0.1 4.1e-19 67.8 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain MarR_2 PF12802.2 gi|452206057|ref|YP_007486179.1| - 0.0006 19.4 0.2 0.0019 17.7 0.0 2.0 2 0 0 2 2 2 1 MarR family UPF0122 PF04297.9 gi|452206057|ref|YP_007486179.1| - 0.0049 16.8 0.0 0.018 15.0 0.0 1.9 1 1 2 3 3 3 1 Putative helix-turn-helix protein, YlxM / p13 like Sigma70_r4 PF04545.11 gi|452206057|ref|YP_007486179.1| - 0.0078 15.5 0.2 0.028 13.7 0.1 2.0 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_24 PF13412.1 gi|452206057|ref|YP_007486179.1| - 0.023 14.0 0.0 0.086 12.2 0.0 2.0 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_11 PF08279.7 gi|452206057|ref|YP_007486179.1| - 0.031 13.9 0.0 0.21 11.2 0.0 2.3 2 0 0 2 2 2 0 HTH domain HTH_Tnp_4 PF13613.1 gi|452206057|ref|YP_007486179.1| - 0.071 12.6 0.0 0.17 11.4 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix of DDE superfamily endonuclease LacI PF00356.16 gi|452206057|ref|YP_007486179.1| - 0.084 12.4 0.1 0.2 11.3 0.1 1.7 1 0 0 1 1 1 0 Bacterial regulatory proteins, lacI family HTH_IclR PF09339.5 gi|452206057|ref|YP_007486179.1| - 0.093 12.3 0.0 0.57 9.8 0.0 2.3 2 0 0 2 2 2 0 IclR helix-turn-helix domain GntR PF00392.16 gi|452206057|ref|YP_007486179.1| - 0.1 12.0 0.1 1.7 8.1 0.0 2.6 2 1 0 2 2 2 0 Bacterial regulatory proteins, gntR family Sigma70_r4_2 PF08281.7 gi|452206057|ref|YP_007486179.1| - 0.17 11.3 0.4 0.5 9.8 0.0 2.1 3 0 0 3 3 3 0 Sigma-70, region 4 DHQS PF01959.11 gi|452206058|ref|YP_007486180.1| - 1.1e-149 498.0 2.5 1.2e-149 497.8 1.7 1.0 1 0 0 1 1 1 1 3-dehydroquinate synthase (EC 4.6.1.3) Hint PF01079.15 gi|452206058|ref|YP_007486180.1| - 0.0093 15.1 0.0 0.045 12.9 0.0 2.0 2 0 0 2 2 2 1 Hint module QRPTase_C PF01729.14 gi|452206058|ref|YP_007486180.1| - 0.013 15.0 1.8 0.032 13.7 0.2 2.3 3 0 0 3 3 3 0 Quinolinate phosphoribosyl transferase, C-terminal domain Hint_2 PF13403.1 gi|452206058|ref|YP_007486180.1| - 0.016 15.1 1.3 3.9 7.3 0.0 3.1 2 1 2 4 4 4 0 Hint domain DHquinase_I PF01487.10 gi|452206059|ref|YP_007486181.1| - 5.7e-41 140.6 0.0 7.7e-41 140.1 0.0 1.1 1 0 0 1 1 1 1 Type I 3-dehydroquinase Glyco_trans_4_4 PF13579.1 gi|452206059|ref|YP_007486181.1| - 0.015 15.4 4.2 0.042 13.9 1.3 2.5 1 1 1 2 2 2 0 Glycosyl transferase 4-like domain Isochorismatase PF00857.15 gi|452206059|ref|YP_007486181.1| - 0.023 14.6 0.0 0.035 14.0 0.0 1.3 1 0 0 1 1 1 0 Isochorismatase family bZIP_2 PF07716.10 gi|452206060|ref|YP_007486182.1| - 2.6 7.9 6.0 4.1 7.3 4.1 1.2 1 0 0 1 1 1 0 Basic region leucine zipper UPF0104 PF03706.8 gi|452206061|ref|YP_007486183.1| - 3.7e-37 128.2 29.5 5.3e-37 127.6 20.4 1.2 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0104) Glycos_transf_2 PF00535.21 gi|452206061|ref|YP_007486183.1| - 7.8e-24 84.2 0.0 1.1e-23 83.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|452206061|ref|YP_007486183.1| - 3.1e-10 40.2 0.1 8.3e-10 38.8 0.0 1.8 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|452206061|ref|YP_007486183.1| - 2.2e-05 23.6 0.0 3.2e-05 23.1 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|452206061|ref|YP_007486183.1| - 0.0042 17.3 0.0 0.0095 16.2 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferase family 2 PQQ_3 PF13570.1 gi|452206062|ref|YP_007486184.1| - 8.3e-42 140.3 35.7 3e-08 33.6 0.6 8.1 8 0 0 8 8 8 7 PQQ-like domain PQQ_2 PF13360.1 gi|452206062|ref|YP_007486184.1| - 9.3e-39 133.2 11.5 9e-16 58.0 0.5 3.5 1 1 2 3 3 3 3 PQQ-like domain PQQ PF01011.16 gi|452206062|ref|YP_007486184.1| - 1.1e-36 122.4 16.9 7.3e-10 37.8 0.3 7.4 7 0 0 7 7 7 5 PQQ enzyme repeat WD40 PF00400.27 gi|452206062|ref|YP_007486184.1| - 0.023 14.6 0.2 2.8 7.9 0.0 3.4 3 0 0 3 3 3 0 WD domain, G-beta repeat TAT_signal PF10518.4 gi|452206062|ref|YP_007486184.1| - 1.6 8.8 11.0 0.6 10.2 4.7 2.6 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence Lactate_perm PF02652.9 gi|452206063|ref|YP_007486185.1| - 2.2e-104 349.8 41.6 2.9e-104 349.4 28.9 1.1 1 0 0 1 1 1 1 L-lactate permease HTH_20 PF12840.2 gi|452206064|ref|YP_007486186.1| - 1.5e-06 27.8 0.2 2.7e-06 27.0 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|452206064|ref|YP_007486186.1| - 1.4e-05 24.6 0.0 2.3e-05 23.9 0.0 1.3 1 0 0 1 1 1 1 HTH domain HTH_IclR PF09339.5 gi|452206064|ref|YP_007486186.1| - 0.0011 18.4 0.1 0.0019 17.7 0.1 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|452206064|ref|YP_007486186.1| - 0.0049 16.5 0.3 0.0085 15.7 0.2 1.4 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|452206064|ref|YP_007486186.1| - 0.008 15.8 0.0 0.016 14.9 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_36 PF13730.1 gi|452206064|ref|YP_007486186.1| - 0.025 14.6 0.0 0.075 13.1 0.0 1.8 3 0 0 3 3 3 0 Helix-turn-helix domain HTH_27 PF13463.1 gi|452206064|ref|YP_007486186.1| - 0.061 13.6 0.0 0.12 12.7 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain Lactate_perm PF02652.9 gi|452206065|ref|YP_007486187.1| - 2.7e-103 346.2 36.1 3.2e-103 346.0 25.0 1.1 1 0 0 1 1 1 1 L-lactate permease RIC3 PF15361.1 gi|452206065|ref|YP_007486187.1| - 0.57 10.4 2.2 0.98 9.6 0.1 2.1 2 0 0 2 2 2 0 Resistance to inhibitors of cholinesterase homologue 3 GCS2 PF04107.8 gi|452206066|ref|YP_007486188.1| - 0.00063 18.9 1.1 0.16 11.0 0.1 2.5 2 0 0 2 2 2 2 Glutamate-cysteine ligase family 2(GCS2) TFIIB PF00382.14 gi|452206067|ref|YP_007486189.1| - 1.3e-37 127.4 1.8 2.1e-20 72.2 0.0 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|452206067|ref|YP_007486189.1| - 8e-14 50.6 1.8 1.4e-13 49.8 1.3 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding Sigma70_r4 PF04545.11 gi|452206067|ref|YP_007486189.1| - 0.0014 17.8 0.3 0.021 14.1 0.1 2.6 2 0 0 2 2 2 1 Sigma-70, region 4 DZR PF12773.2 gi|452206067|ref|YP_007486189.1| - 0.0044 16.7 0.4 0.0084 15.9 0.3 1.4 1 0 0 1 1 1 1 Double zinc ribbon Cyclin_C PF02984.14 gi|452206067|ref|YP_007486189.1| - 0.015 15.2 0.0 0.077 12.9 0.0 2.0 2 0 0 2 2 2 0 Cyclin, C-terminal domain zf-ribbon_3 PF13248.1 gi|452206067|ref|YP_007486189.1| - 0.018 14.2 1.0 0.031 13.5 0.7 1.4 1 0 0 1 1 1 0 zinc-ribbon domain Sigma70_r4_2 PF08281.7 gi|452206067|ref|YP_007486189.1| - 0.034 13.6 0.1 0.14 11.6 0.0 2.0 1 0 0 1 1 1 0 Sigma-70, region 4 DUF2746 PF10874.3 gi|452206067|ref|YP_007486189.1| - 0.069 13.3 0.4 0.25 11.5 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2746) A2L_zn_ribbon PF08792.5 gi|452206067|ref|YP_007486189.1| - 0.14 11.6 1.6 0.34 10.4 1.1 1.7 1 1 0 1 1 1 0 A2L zinc ribbon domain Nudix_N_2 PF14803.1 gi|452206067|ref|YP_007486189.1| - 0.18 11.5 2.9 0.56 9.9 2.0 1.8 1 1 0 1 1 1 0 Nudix N-terminal UPF0547 PF10571.4 gi|452206067|ref|YP_007486189.1| - 0.34 10.6 1.1 0.6 9.8 0.8 1.4 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 Zn-ribbon_8 PF09723.5 gi|452206067|ref|YP_007486189.1| - 0.83 9.6 4.1 2.1 8.3 0.3 2.5 1 1 1 2 2 2 0 Zinc ribbon domain Lar_restr_allev PF14354.1 gi|452206067|ref|YP_007486189.1| - 5 7.5 5.9 0.87 9.9 0.6 2.2 2 0 0 2 2 2 0 Restriction alleviation protein Lar zf-RING_3 PF14369.1 gi|452206067|ref|YP_007486189.1| - 5.6 7.0 5.2 2.9 7.9 0.4 2.3 1 1 1 2 2 2 0 zinc-finger PALP PF00291.20 gi|452206068|ref|YP_007486190.1| - 2.9e-78 263.2 11.8 3.6e-78 262.8 8.1 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ACT_4 PF13291.1 gi|452206068|ref|YP_007486190.1| - 1.2e-07 31.9 0.4 6.5e-06 26.4 0.1 2.5 2 0 0 2 2 2 1 ACT domain ACT PF01842.20 gi|452206068|ref|YP_007486190.1| - 0.0002 20.7 1.7 0.00056 19.3 0.1 2.7 2 1 0 2 2 2 1 ACT domain ACT_6 PF13740.1 gi|452206068|ref|YP_007486190.1| - 0.024 14.3 0.1 0.078 12.6 0.0 1.9 1 0 0 1 1 1 0 ACT domain HTH_22 PF13309.1 gi|452206068|ref|YP_007486190.1| - 0.024 14.4 0.0 0.095 12.4 0.0 2.1 2 0 0 2 2 2 0 HTH domain ABC2_membrane_2 PF12679.2 gi|452206069|ref|YP_007486191.1| - 2.6e-51 174.1 14.9 2.9e-51 173.9 10.3 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|452206069|ref|YP_007486191.1| - 3.8e-15 55.7 19.8 6.9e-15 54.8 13.8 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|452206069|ref|YP_007486191.1| - 1.3e-07 31.0 15.4 1.3e-07 31.0 10.6 1.8 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|452206069|ref|YP_007486191.1| - 4.6e-07 29.3 8.4 4.6e-07 29.3 5.8 2.0 2 1 0 2 2 2 1 ABC-2 family transporter protein NQR2_RnfD_RnfE PF03116.10 gi|452206069|ref|YP_007486191.1| - 0.16 11.1 10.8 0.32 10.1 7.5 1.4 1 0 0 1 1 1 0 NQR2, RnfD, RnfE family DUF805 PF05656.9 gi|452206069|ref|YP_007486191.1| - 0.23 11.2 24.8 0.1 12.3 6.7 3.2 1 1 2 3 3 3 0 Protein of unknown function (DUF805) CcmB PF03379.8 gi|452206069|ref|YP_007486191.1| - 0.43 9.7 9.2 0.11 11.7 3.6 2.1 2 1 0 2 2 2 0 CcmB protein Oxidored_q3 PF00499.15 gi|452206069|ref|YP_007486191.1| - 0.54 10.0 11.0 0.039 13.7 3.8 1.8 2 0 0 2 2 2 0 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 ABC_tran PF00005.22 gi|452206070|ref|YP_007486192.1| - 9.4e-28 97.2 0.0 1.5e-27 96.5 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|452206070|ref|YP_007486192.1| - 3.8e-14 53.3 0.0 6.2e-09 36.2 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_23 PF13476.1 gi|452206070|ref|YP_007486192.1| - 0.002 18.4 0.1 0.0034 17.7 0.1 1.3 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|452206070|ref|YP_007486192.1| - 0.0022 18.0 0.0 0.0042 17.1 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.1 gi|452206070|ref|YP_007486192.1| - 0.0071 15.8 0.0 0.015 14.8 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF4162 PF13732.1 gi|452206070|ref|YP_007486192.1| - 0.015 15.7 0.0 0.025 15.0 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4162) DUF258 PF03193.11 gi|452206070|ref|YP_007486192.1| - 0.022 13.9 0.0 0.034 13.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 SMC_N PF02463.14 gi|452206070|ref|YP_007486192.1| - 0.034 13.3 0.0 7.2 5.7 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain MMR_HSR1 PF01926.18 gi|452206070|ref|YP_007486192.1| - 0.048 13.6 0.0 0.18 11.7 0.0 2.1 1 1 0 1 1 1 0 50S ribosome-binding GTPase SbcCD_C PF13558.1 gi|452206070|ref|YP_007486192.1| - 0.058 13.3 0.0 0.23 11.3 0.0 2.0 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit PCNA_N PF00705.13 gi|452206071|ref|YP_007486193.1| - 4.5e-10 39.1 0.1 7.7e-10 38.3 0.1 1.4 1 0 0 1 1 1 1 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.10 gi|452206071|ref|YP_007486193.1| - 1.6e-05 24.7 0.0 5.6e-05 23.0 0.0 2.0 2 1 0 2 2 2 1 Proliferating cell nuclear antigen, C-terminal domain DUF2993 PF11209.3 gi|452206071|ref|YP_007486193.1| - 0.046 13.6 0.5 0.23 11.3 0.2 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF2993) DNA_pol3_beta PF00712.14 gi|452206071|ref|YP_007486193.1| - 0.052 13.4 0.0 3.9 7.3 0.0 2.3 2 0 0 2 2 2 0 DNA polymerase III beta subunit, N-terminal domain 2-oxoacid_dh PF00198.18 gi|452206072|ref|YP_007486194.1| - 1.1e-84 283.3 0.0 1.4e-84 282.9 0.0 1.2 1 0 0 1 1 1 1 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Biotin_lipoyl PF00364.17 gi|452206072|ref|YP_007486194.1| - 6.1e-23 80.2 0.7 1.4e-22 79.1 0.5 1.6 1 0 0 1 1 1 1 Biotin-requiring enzyme E3_binding PF02817.12 gi|452206072|ref|YP_007486194.1| - 5.8e-19 67.4 4.8 4.6e-13 48.5 1.2 2.6 2 0 0 2 2 2 2 e3 binding domain Biotin_lipoyl_2 PF13533.1 gi|452206072|ref|YP_007486194.1| - 3.7e-06 26.4 1.3 0.006 16.2 0.6 2.5 1 1 1 2 2 2 2 Biotin-lipoyl like GCV_H PF01597.14 gi|452206072|ref|YP_007486194.1| - 3.1e-05 23.6 0.3 6.2e-05 22.6 0.2 1.4 1 0 0 1 1 1 1 Glycine cleavage H-protein HlyD_3 PF13437.1 gi|452206072|ref|YP_007486194.1| - 0.00084 19.6 1.4 0.013 15.8 0.2 2.5 1 1 1 2 2 2 1 HlyD family secretion protein HlyD_2 PF12700.2 gi|452206072|ref|YP_007486194.1| - 0.072 12.2 0.0 4.3 6.3 0.0 2.2 1 1 1 2 2 2 0 HlyD family secretion protein Transket_pyr PF02779.19 gi|452206073|ref|YP_007486195.1| - 2e-51 174.0 0.0 2.7e-51 173.5 0.0 1.2 1 0 0 1 1 1 1 Transketolase, pyrimidine binding domain Transketolase_C PF02780.15 gi|452206073|ref|YP_007486195.1| - 4.6e-38 129.9 0.2 1.8e-37 128.0 0.0 2.0 3 0 0 3 3 3 1 Transketolase, C-terminal domain E1_dh PF00676.15 gi|452206074|ref|YP_007486196.1| - 1.6e-80 270.0 0.0 3.1e-80 269.1 0.0 1.4 1 1 0 1 1 1 1 Dehydrogenase E1 component DXP_synthase_N PF13292.1 gi|452206074|ref|YP_007486196.1| - 4.2e-06 25.9 0.0 7.6e-06 25.0 0.0 1.4 1 0 0 1 1 1 1 1-deoxy-D-xylulose-5-phosphate synthase Transketolase_N PF00456.16 gi|452206074|ref|YP_007486196.1| - 0.00014 20.8 0.1 0.00029 19.7 0.0 1.5 2 0 0 2 2 2 1 Transketolase, thiamine diphosphate binding domain DNA_primase_lrg PF04104.9 gi|452206076|ref|YP_007486198.1| - 9.6e-15 54.5 0.0 2.5e-14 53.1 0.0 1.6 1 1 0 1 1 1 1 Eukaryotic and archaeal DNA primase, large subunit DoxX_2 PF13564.1 gi|452206077|ref|YP_007486199.1| - 0.074 13.0 3.9 0.082 12.8 2.7 1.2 1 0 0 1 1 1 0 DoxX-like family DUF46 PF01864.12 gi|452206078|ref|YP_007486200.1| - 4.7e-46 156.8 1.3 5.6e-46 156.6 0.9 1.0 1 0 0 1 1 1 1 Putative integral membrane protein DUF46 CTP_transf_1 PF01148.15 gi|452206078|ref|YP_007486200.1| - 4e-06 26.6 3.7 7.8e-06 25.7 1.0 2.1 1 1 1 2 2 2 1 Cytidylyltransferase family Gly-zipper_YMGG PF13441.1 gi|452206078|ref|YP_007486200.1| - 0.78 9.3 5.6 5.6 6.5 4.1 2.3 1 1 0 1 1 1 0 YMGG-like Gly-zipper Rick_17kDa_Anti PF05433.10 gi|452206078|ref|YP_007486200.1| - 0.86 9.3 9.1 19 4.9 4.5 2.8 2 1 0 2 2 2 0 Glycine zipper 2TM domain Cation_efflux PF01545.16 gi|452206078|ref|YP_007486200.1| - 1.2 8.1 4.8 4.5 6.2 3.3 1.8 1 1 0 1 1 1 0 Cation efflux family DUF2273 PF10031.4 gi|452206078|ref|YP_007486200.1| - 4.5 6.9 6.3 0.85 9.2 0.1 2.8 3 0 0 3 3 3 0 Small integral membrane protein (DUF2273) DUF502 PF04367.8 gi|452206079|ref|YP_007486201.1| - 5.3e-18 64.7 0.3 2.3e-17 62.7 0.0 1.9 1 1 1 2 2 2 1 Protein of unknown function (DUF502) ABC2_membrane_3 PF12698.2 gi|452206079|ref|YP_007486201.1| - 0.41 9.6 5.8 0.66 8.9 4.0 1.2 1 0 0 1 1 1 0 ABC-2 family transporter protein UbiA PF01040.13 gi|452206080|ref|YP_007486202.1| - 1.5e-31 109.5 27.4 2.6e-31 108.8 18.0 1.7 1 1 0 1 1 1 1 UbiA prenyltransferase family TRAM PF01938.15 gi|452206081|ref|YP_007486203.1| - 1e-11 44.4 1.0 1.4e-11 44.0 0.7 1.2 1 0 0 1 1 1 1 TRAM domain TFX_C PF14601.1 gi|452206082|ref|YP_007486204.1| - 2.7e-32 110.3 0.1 3.7e-32 109.9 0.0 1.2 1 0 0 1 1 1 1 DNA_binding protein, TFX, C-term Sigma70_r4 PF04545.11 gi|452206082|ref|YP_007486204.1| - 6.1e-07 28.6 0.1 1e-06 27.9 0.1 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4_2 PF08281.7 gi|452206082|ref|YP_007486204.1| - 0.00036 19.9 0.0 0.00067 19.0 0.0 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 GerE PF00196.14 gi|452206082|ref|YP_007486204.1| - 0.00051 19.3 0.1 0.00085 18.5 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_31 PF13560.1 gi|452206082|ref|YP_007486204.1| - 0.0061 16.7 2.0 0.012 15.8 1.4 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain DUF134 PF02001.11 gi|452206082|ref|YP_007486204.1| - 0.0088 15.9 0.1 0.017 15.0 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function DUF134 MarR_2 PF12802.2 gi|452206082|ref|YP_007486204.1| - 0.02 14.5 0.1 0.056 13.1 0.1 1.7 1 0 0 1 1 1 0 MarR family HTH_37 PF13744.1 gi|452206082|ref|YP_007486204.1| - 0.033 14.0 0.0 0.062 13.1 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_3 PF01381.17 gi|452206082|ref|YP_007486204.1| - 0.081 12.7 0.1 0.15 11.8 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix RepB PF07506.6 gi|452206082|ref|YP_007486204.1| - 0.082 12.7 0.2 0.17 11.7 0.1 1.5 2 0 0 2 2 2 0 RepB plasmid partitioning protein UPF0122 PF04297.9 gi|452206082|ref|YP_007486204.1| - 0.16 12.0 0.0 0.24 11.4 0.0 1.2 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like adh_short_C2 PF13561.1 gi|452206083|ref|YP_007486205.1| - 1.1e-28 100.6 0.0 1.2e-28 100.4 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.20 gi|452206083|ref|YP_007486205.1| - 5.1e-19 68.7 3.6 7.2e-19 68.3 2.5 1.2 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|452206083|ref|YP_007486205.1| - 9.9e-11 41.6 0.2 1.9e-10 40.6 0.1 1.4 1 0 0 1 1 1 1 KR domain NAD_binding_10 PF13460.1 gi|452206083|ref|YP_007486205.1| - 9.1e-05 22.5 1.9 0.00015 21.8 1.3 1.3 1 0 0 1 1 1 1 NADH(P)-binding Epimerase PF01370.16 gi|452206083|ref|YP_007486205.1| - 0.00029 20.3 0.1 0.00038 19.9 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3HCDH_N PF02737.13 gi|452206083|ref|YP_007486205.1| - 0.0054 16.4 0.4 0.0085 15.7 0.3 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DUF348 PF03990.9 gi|452206083|ref|YP_007486205.1| - 0.19 11.3 4.6 0.3 10.6 0.1 3.0 3 0 0 3 3 3 0 Domain of unknown function (DUF348) UTRA PF07702.8 gi|452206084|ref|YP_007486206.1| - 0.025 14.1 0.1 0.029 13.9 0.0 1.2 1 0 0 1 1 1 0 UTRA domain GHBP PF12772.2 gi|452206084|ref|YP_007486206.1| - 0.096 12.0 0.4 0.11 11.8 0.2 1.2 1 0 0 1 1 1 0 Growth hormone receptor binding tRNA_anti-codon PF01336.20 gi|452206085|ref|YP_007486207.1| - 2.3e-05 24.1 0.0 7.1e-05 22.5 0.0 1.8 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain Arc_PepC_II PF06847.6 gi|452206087|ref|YP_007486209.1| - 1e-13 51.4 0.0 4.7e-13 49.3 0.0 1.8 2 0 0 2 2 2 1 Archaeal Peptidase A24 C-terminus Type II Peptidase_A24 PF01478.13 gi|452206087|ref|YP_007486209.1| - 5.8e-10 39.2 8.7 5.8e-10 39.2 6.0 1.8 2 0 0 2 2 2 1 Type IV leader peptidase family TAT_signal PF10518.4 gi|452206088|ref|YP_007486210.1| - 0.82 9.8 4.1 1.4 9.0 2.9 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence GATase PF00117.23 gi|452206089|ref|YP_007486211.1| - 4.1e-33 114.4 0.0 4.7e-33 114.2 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|452206089|ref|YP_007486211.1| - 1.6e-11 44.0 2.1 2.9e-10 39.9 0.3 2.8 2 1 0 2 2 2 1 Peptidase C26 DUF4013 PF13197.1 gi|452206090|ref|YP_007486212.1| - 0.0018 17.5 22.1 0.0018 17.5 15.3 2.5 1 1 1 2 2 2 2 Protein of unknown function (DUF4013) MBOAT_2 PF13813.1 gi|452206090|ref|YP_007486212.1| - 0.062 13.3 0.3 0.062 13.3 0.2 2.2 2 1 0 2 2 2 0 Membrane bound O-acyl transferase family HMGL-like PF00682.14 gi|452206091|ref|YP_007486213.1| - 5.7e-60 202.9 0.7 9.5e-60 202.1 0.5 1.3 1 0 0 1 1 1 1 HMGL-like LeuA_dimer PF08502.5 gi|452206091|ref|YP_007486213.1| - 3.2e-31 107.8 1.5 5.6e-31 107.0 1.0 1.4 1 0 0 1 1 1 1 LeuA allosteric (dimerisation) domain AP_endonuc_2 PF01261.19 gi|452206091|ref|YP_007486213.1| - 0.3 10.3 4.4 0.24 10.6 0.1 2.4 2 1 0 2 2 2 0 Xylose isomerase-like TIM barrel DUF192 PF02643.10 gi|452206092|ref|YP_007486214.1| - 8.3e-16 57.6 0.0 9.5e-16 57.4 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized ACR, COG1430 Sec61_beta PF03911.11 gi|452206093|ref|YP_007486215.1| - 6.1e-05 22.7 0.0 8.5e-05 22.2 0.0 1.3 1 0 0 1 1 1 1 Sec61beta family Thioredoxin PF00085.15 gi|452206094|ref|YP_007486216.1| - 3.8e-23 81.1 0.0 4.3e-23 80.9 0.0 1.0 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_8 PF13905.1 gi|452206094|ref|YP_007486216.1| - 2.2e-07 30.8 0.0 0.0002 21.4 0.0 2.1 1 1 1 2 2 2 2 Thioredoxin-like Thioredoxin_2 PF13098.1 gi|452206094|ref|YP_007486216.1| - 4.1e-07 30.1 0.1 5.5e-06 26.5 0.1 1.9 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_9 PF14595.1 gi|452206094|ref|YP_007486216.1| - 1.2e-06 28.1 0.0 1.5e-06 27.8 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_3 PF13192.1 gi|452206094|ref|YP_007486216.1| - 1.4e-05 24.8 0.0 1.5e-05 24.7 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin domain Redoxin PF08534.5 gi|452206094|ref|YP_007486216.1| - 7.2e-05 22.3 0.2 0.0027 17.2 0.0 2.0 1 1 1 2 2 2 1 Redoxin AhpC-TSA PF00578.16 gi|452206094|ref|YP_007486216.1| - 0.0004 20.0 0.2 0.016 14.8 0.1 2.0 1 1 0 1 1 1 1 AhpC/TSA family Phosducin PF02114.11 gi|452206094|ref|YP_007486216.1| - 0.0011 17.7 0.0 0.0011 17.7 0.0 1.0 1 0 0 1 1 1 1 Phosducin DSBA PF01323.15 gi|452206094|ref|YP_007486216.1| - 0.0016 18.0 0.3 0.36 10.3 0.0 2.0 1 1 1 2 2 2 2 DSBA-like thioredoxin domain DUF836 PF05768.9 gi|452206094|ref|YP_007486216.1| - 0.0053 16.9 0.0 0.0059 16.8 0.0 1.1 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) Glutaredoxin PF00462.19 gi|452206094|ref|YP_007486216.1| - 0.0093 15.9 0.1 0.014 15.3 0.0 1.3 1 0 0 1 1 1 1 Glutaredoxin TraF PF13728.1 gi|452206094|ref|YP_007486216.1| - 0.03 13.7 0.0 0.034 13.6 0.0 1.2 1 0 0 1 1 1 0 F plasmid transfer operon protein Thioredoxin_7 PF13899.1 gi|452206094|ref|YP_007486216.1| - 0.04 13.9 0.2 0.089 12.8 0.1 1.6 1 1 0 1 1 1 0 Thioredoxin-like HyaE PF07449.6 gi|452206094|ref|YP_007486216.1| - 0.047 13.5 0.0 0.053 13.4 0.0 1.1 1 0 0 1 1 1 0 Hydrogenase-1 expression protein HyaE Thioredoxin_5 PF13743.1 gi|452206094|ref|YP_007486216.1| - 0.079 12.5 0.0 0.084 12.4 0.0 1.2 1 0 0 1 1 1 0 Thioredoxin OTCace_N PF02729.16 gi|452206095|ref|YP_007486217.1| - 2e-49 166.9 0.0 4.2e-49 165.8 0.0 1.6 2 0 0 2 2 2 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.19 gi|452206095|ref|YP_007486217.1| - 1.2e-41 142.1 0.0 3.3e-41 140.8 0.0 1.6 2 0 0 2 2 2 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Peptidase_M20 PF01546.23 gi|452206096|ref|YP_007486218.1| - 1e-24 87.0 0.2 1.4e-24 86.6 0.1 1.2 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|452206096|ref|YP_007486218.1| - 0.003 17.2 0.0 0.0066 16.1 0.0 1.5 1 1 0 1 1 1 1 Peptidase dimerisation domain Aminotran_3 PF00202.16 gi|452206097|ref|YP_007486219.1| - 1.9e-98 329.4 0.0 2.2e-98 329.2 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III AA_kinase PF00696.23 gi|452206098|ref|YP_007486220.1| - 5.5e-33 114.4 3.0 6.3e-33 114.3 2.1 1.0 1 0 0 1 1 1 1 Amino acid kinase family DUF2493 PF10686.4 gi|452206098|ref|YP_007486220.1| - 0.58 9.7 4.3 0.64 9.5 0.2 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF2493) Semialdhyde_dh PF01118.19 gi|452206099|ref|YP_007486221.1| - 4.2e-28 98.0 0.0 7.3e-28 97.3 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain DapB_N PF01113.15 gi|452206099|ref|YP_007486221.1| - 0.079 12.8 0.0 0.15 12.0 0.0 1.4 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus RimK PF08443.6 gi|452206100|ref|YP_007486222.1| - 2.6e-41 141.1 0.0 3.4e-41 140.8 0.0 1.1 1 0 0 1 1 1 1 RimK-like ATP-grasp domain ATP-grasp_4 PF13535.1 gi|452206100|ref|YP_007486222.1| - 3.1e-17 62.9 0.1 4.9e-17 62.2 0.1 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_3 PF02655.9 gi|452206100|ref|YP_007486222.1| - 2.5e-09 37.2 0.0 3.6e-09 36.6 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain GSH-S_ATP PF02955.11 gi|452206100|ref|YP_007486222.1| - 3.6e-09 35.9 0.0 6.1e-09 35.2 0.0 1.4 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|452206100|ref|YP_007486222.1| - 1.5e-06 27.2 0.0 2.2e-06 26.6 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon CPSase_L_D2 PF02786.12 gi|452206100|ref|YP_007486222.1| - 9.3e-05 21.8 0.0 0.00018 20.8 0.0 1.4 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp_5 PF13549.1 gi|452206100|ref|YP_007486222.1| - 0.0019 17.4 0.0 0.0041 16.3 0.0 1.7 1 1 0 1 1 1 1 ATP-grasp domain ATP-grasp PF02222.17 gi|452206100|ref|YP_007486222.1| - 0.0025 17.1 0.1 0.012 14.9 0.0 2.2 2 1 0 2 2 2 1 ATP-grasp domain Lyase_1 PF00206.15 gi|452206102|ref|YP_007486224.1| - 2.2e-55 188.0 0.1 4.1e-55 187.1 0.0 1.4 1 0 0 1 1 1 1 Lyase ASL_C2 PF14698.1 gi|452206102|ref|YP_007486224.1| - 4e-11 42.8 1.2 4e-11 42.8 0.8 2.4 2 0 0 2 2 2 1 Argininosuccinate lyase C-terminal UCR_Fe-S_N PF10399.4 gi|452206102|ref|YP_007486224.1| - 0.1 11.7 0.2 0.1 11.7 0.2 2.9 2 0 0 2 2 2 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal Arginosuc_synth PF00764.14 gi|452206103|ref|YP_007486225.1| - 4.2e-137 457.3 0.0 4.8e-137 457.1 0.0 1.0 1 0 0 1 1 1 1 Arginosuccinate synthase QueC PF06508.8 gi|452206103|ref|YP_007486225.1| - 5.3e-05 22.5 0.0 9e-05 21.8 0.0 1.3 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC Asn_synthase PF00733.16 gi|452206103|ref|YP_007486225.1| - 0.00016 21.2 0.0 0.00029 20.4 0.0 1.4 1 0 0 1 1 1 1 Asparagine synthase tRNA_Me_trans PF03054.11 gi|452206103|ref|YP_007486225.1| - 0.011 14.2 0.0 0.018 13.6 0.0 1.3 1 0 0 1 1 1 0 tRNA methyl transferase RHH_1 PF01402.16 gi|452206103|ref|YP_007486225.1| - 0.021 14.6 0.0 0.066 13.1 0.0 1.8 1 0 0 1 1 1 0 Ribbon-helix-helix protein, copG family NAD_synthase PF02540.12 gi|452206103|ref|YP_007486225.1| - 0.027 13.3 0.0 0.039 12.8 0.0 1.2 1 0 0 1 1 1 0 NAD synthase DUF456 PF04306.8 gi|452206104|ref|YP_007486226.1| - 1.9e-19 70.0 22.9 1.9e-19 70.0 15.8 1.3 2 0 0 2 2 2 1 Protein of unknown function (DUF456) PsiE PF06146.7 gi|452206105|ref|YP_007486227.1| - 2.2e-12 47.0 6.5 5e-12 45.8 4.5 1.6 1 0 0 1 1 1 1 Phosphate-starvation-inducible E DUF1129 PF06570.6 gi|452206105|ref|YP_007486227.1| - 0.16 11.2 2.4 0.21 10.8 1.4 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1129) DUF2177 PF09945.4 gi|452206105|ref|YP_007486227.1| - 1.1 9.2 6.5 0.96 9.4 1.3 2.1 1 1 1 2 2 2 0 Predicted membrane protein (DUF2177) Myco_arth_vir_N PF09610.5 gi|452206105|ref|YP_007486227.1| - 6.1 6.8 7.7 0.43 10.5 0.3 2.7 2 1 1 3 3 3 0 Mycoplasma virulence signal region (Myco_arth_vir_N) TcpE PF12648.2 gi|452206107|ref|YP_007486229.1| - 0.89 9.7 3.4 0.96 9.6 2.4 1.1 1 0 0 1 1 1 0 TcpE family DUF3487 PF11990.3 gi|452206107|ref|YP_007486229.1| - 5.5 6.4 5.8 5.6 6.3 4.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3487) 2_5_RNA_ligase2 PF13563.1 gi|452206108|ref|YP_007486230.1| - 4.1e-11 42.8 0.0 5.7e-11 42.3 0.0 1.3 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily LigT_PEase PF02834.11 gi|452206108|ref|YP_007486230.1| - 4.1e-06 26.6 0.0 0.15 12.0 0.0 2.8 2 2 0 2 2 2 2 LigT like Phosphoesterase AKAP7_NLS PF10469.4 gi|452206108|ref|YP_007486230.1| - 0.03 14.0 0.0 0.036 13.7 0.0 1.1 1 0 0 1 1 1 0 AKAP7 2'5' RNA ligase-like domain FAD_binding_3 PF01494.14 gi|452206110|ref|YP_007486232.1| - 4.8e-14 52.1 1.8 6.3e-08 32.0 0.0 3.1 3 0 0 3 3 3 3 FAD binding domain DAO PF01266.19 gi|452206110|ref|YP_007486232.1| - 4.6e-10 38.9 3.7 1.5e-06 27.3 0.5 2.3 1 1 1 2 2 2 2 FAD dependent oxidoreductase Lycopene_cycl PF05834.7 gi|452206110|ref|YP_007486232.1| - 9.1e-09 34.6 0.2 0.0042 16.0 0.0 2.7 2 1 0 2 2 2 2 Lycopene cyclase protein FAD_oxidored PF12831.2 gi|452206110|ref|YP_007486232.1| - 3.3e-07 29.7 0.3 4.6e-07 29.2 0.2 1.1 1 0 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|452206110|ref|YP_007486232.1| - 4.2e-06 25.5 0.0 1.2e-05 24.0 0.0 1.6 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox_3 PF13738.1 gi|452206110|ref|YP_007486232.1| - 1.5e-05 25.1 0.0 2.6e-05 24.3 0.0 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.9 gi|452206110|ref|YP_007486232.1| - 1.9e-05 24.6 0.1 3.5e-05 23.7 0.0 1.5 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|452206110|ref|YP_007486232.1| - 3.8e-05 22.7 1.1 5.6e-05 22.1 0.5 1.5 1 1 0 1 1 1 1 FAD binding domain Trp_halogenase PF04820.9 gi|452206110|ref|YP_007486232.1| - 0.0012 17.5 0.1 0.91 8.0 0.0 2.3 2 1 0 2 2 2 2 Tryptophan halogenase NAD_binding_8 PF13450.1 gi|452206110|ref|YP_007486232.1| - 0.0013 18.7 0.9 0.0037 17.2 0.1 2.2 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.22 gi|452206110|ref|YP_007486232.1| - 0.0029 17.9 0.1 0.26 11.7 0.1 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|452206110|ref|YP_007486232.1| - 0.0086 15.1 0.1 0.014 14.5 0.0 1.3 1 0 0 1 1 1 1 Thi4 family GIDA PF01134.17 gi|452206110|ref|YP_007486232.1| - 0.031 13.1 0.1 0.042 12.6 0.1 1.2 1 0 0 1 1 1 0 Glucose inhibited division protein A PRA-PH PF01503.12 gi|452206111|ref|YP_007486233.1| - 7.6e-15 54.9 1.8 9.9e-15 54.5 1.3 1.2 1 0 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase MazG PF03819.12 gi|452206111|ref|YP_007486233.1| - 3.7e-05 23.5 2.2 5e-05 23.1 1.5 1.2 1 0 0 1 1 1 1 MazG nucleotide pyrophosphohydrolase domain DNase-RNase PF02577.9 gi|452206112|ref|YP_007486234.1| - 5.2e-36 122.8 0.0 6.3e-36 122.6 0.0 1.0 1 0 0 1 1 1 1 Bifunctional nuclease SNO PF01174.14 gi|452206113|ref|YP_007486235.1| - 8.7e-52 175.4 0.0 1e-51 175.2 0.0 1.0 1 0 0 1 1 1 1 SNO glutamine amidotransferase family GATase_3 PF07685.9 gi|452206113|ref|YP_007486235.1| - 1.1e-11 44.6 0.0 5.8e-11 42.2 0.0 1.9 1 1 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.23 gi|452206113|ref|YP_007486235.1| - 4.7e-05 22.9 0.0 7e-05 22.3 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I DJ-1_PfpI PF01965.19 gi|452206113|ref|YP_007486235.1| - 0.00011 21.6 0.0 0.00015 21.2 0.0 1.3 1 0 0 1 1 1 1 DJ-1/PfpI family Peptidase_S51 PF03575.12 gi|452206113|ref|YP_007486235.1| - 0.0022 17.7 0.0 0.003 17.3 0.0 1.2 1 0 0 1 1 1 1 Peptidase family S51 DUF4066 PF13278.1 gi|452206113|ref|YP_007486235.1| - 0.043 13.0 0.1 0.063 12.5 0.0 1.3 1 0 0 1 1 1 0 Putative amidotransferase Aconitase PF00330.15 gi|452206113|ref|YP_007486235.1| - 0.088 11.2 0.0 0.11 10.9 0.0 1.1 1 0 0 1 1 1 0 Aconitase family (aconitate hydratase) Metallophos_2 PF12850.2 gi|452206114|ref|YP_007486236.1| - 1.1e-21 77.3 0.8 1.3e-21 77.0 0.5 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|452206114|ref|YP_007486236.1| - 5.6e-05 22.6 1.3 0.069 12.5 0.6 2.3 1 1 1 2 2 2 2 Calcineurin-like phosphoesterase HTH_20 PF12840.2 gi|452206115|ref|YP_007486237.1| - 1.2e-15 57.0 0.4 2.4e-15 56.0 0.2 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|452206115|ref|YP_007486237.1| - 4.4e-09 35.5 0.0 7e-09 34.9 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|452206115|ref|YP_007486237.1| - 9.8e-06 25.1 0.1 2e-05 24.1 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.15 gi|452206115|ref|YP_007486237.1| - 0.0025 17.4 0.0 0.0042 16.7 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|452206115|ref|YP_007486237.1| - 0.072 12.8 0.0 0.12 12.0 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_34 PF13601.1 gi|452206115|ref|YP_007486237.1| - 0.077 13.0 0.0 0.13 12.3 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_IclR PF09339.5 gi|452206115|ref|YP_007486237.1| - 0.097 12.2 0.3 1.7 8.3 0.0 2.3 1 1 1 2 2 2 0 IclR helix-turn-helix domain MarR PF01047.17 gi|452206115|ref|YP_007486237.1| - 0.16 11.6 0.0 0.26 11.0 0.0 1.3 1 0 0 1 1 1 0 MarR family DUF2513 PF10711.4 gi|452206115|ref|YP_007486237.1| - 0.18 11.8 0.0 0.28 11.2 0.0 1.2 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) DUF690 PF05108.8 gi|452206116|ref|YP_007486238.1| - 0.11 10.7 0.3 0.1 10.9 0.2 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF690) DUF4083 PF13314.1 gi|452206116|ref|YP_007486238.1| - 0.18 11.6 1.2 0.23 11.3 0.8 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4083) DUF2215 PF10225.4 gi|452206116|ref|YP_007486238.1| - 0.28 10.5 3.1 0.33 10.3 2.1 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2215) tRNA-synt_1 PF00133.17 gi|452206117|ref|YP_007486239.1| - 9.3e-72 241.8 0.2 1.4e-27 95.9 0.0 4.9 2 2 2 4 4 4 4 tRNA synthetases class I (I, L, M and V) tRNA-synt_1_2 PF13603.1 gi|452206117|ref|YP_007486239.1| - 3.9e-53 179.4 0.0 6.3e-53 178.8 0.0 1.3 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1g PF09334.6 gi|452206117|ref|YP_007486239.1| - 2e-37 128.8 0.0 3.3e-22 78.6 0.0 4.1 3 1 0 3 3 3 2 tRNA synthetases class I (M) Anticodon_1 PF08264.8 gi|452206117|ref|YP_007486239.1| - 4.5e-15 55.7 0.0 8.5e-15 54.8 0.0 1.4 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1e PF01406.14 gi|452206117|ref|YP_007486239.1| - 8.4e-09 34.9 0.1 8.1e-06 25.1 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.13 gi|452206117|ref|YP_007486239.1| - 1.7e-05 23.6 0.0 0.0047 15.6 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (K) DZR PF12773.2 gi|452206117|ref|YP_007486239.1| - 0.026 14.3 4.9 0.52 10.1 0.2 2.6 2 1 0 2 2 2 0 Double zinc ribbon tRNA-synt_1d PF00750.14 gi|452206117|ref|YP_007486239.1| - 0.034 12.9 0.0 1.4 7.6 0.0 2.3 2 0 0 2 2 2 0 tRNA synthetases class I (R) zf-ribbon_3 PF13248.1 gi|452206117|ref|YP_007486239.1| - 0.12 11.6 4.2 3.6 6.9 0.1 3.3 3 0 0 3 3 3 0 zinc-ribbon domain DNA_ligase_ZBD PF03119.11 gi|452206117|ref|YP_007486239.1| - 0.12 12.0 3.4 2 8.2 0.0 2.7 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain tRNA-synt_1b PF00579.20 gi|452206117|ref|YP_007486239.1| - 0.13 11.3 0.1 0.37 9.8 0.0 1.8 2 0 0 2 2 2 0 tRNA synthetases class I (W and Y) tRNA-synt_1c PF00749.16 gi|452206117|ref|YP_007486239.1| - 0.13 10.8 0.2 4.6 5.8 0.0 2.7 3 0 0 3 3 3 0 tRNA synthetases class I (E and Q), catalytic domain Zn-ribbon_8 PF09723.5 gi|452206117|ref|YP_007486239.1| - 1.7 8.6 5.1 2.8 7.9 0.1 3.1 3 0 0 3 3 3 0 Zinc ribbon domain UvrC_HhH_N PF08459.6 gi|452206119|ref|YP_007486241.1| - 2.8e-40 137.4 0.0 5.4e-40 136.4 0.0 1.5 2 0 0 2 2 2 1 UvrC Helix-hairpin-helix N-terminal HHH PF00633.18 gi|452206119|ref|YP_007486241.1| - 8.5e-08 31.4 1.9 3e-05 23.4 0.5 2.9 2 0 0 2 2 2 2 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|452206119|ref|YP_007486241.1| - 9.7e-08 32.0 0.7 2.8e-07 30.5 0.1 2.1 2 0 0 2 2 2 1 Helix-hairpin-helix domain GIY-YIG PF01541.19 gi|452206119|ref|YP_007486241.1| - 1.3e-07 31.8 0.0 2.1e-07 31.1 0.0 1.3 1 0 0 1 1 1 1 GIY-YIG catalytic domain UVR PF02151.14 gi|452206119|ref|YP_007486241.1| - 1.6e-06 27.3 3.8 6.7e-06 25.4 2.7 2.1 1 0 0 1 1 1 1 UvrB/uvrC motif HHH_2 PF12826.2 gi|452206119|ref|YP_007486241.1| - 1.8e-06 27.7 0.0 3.9e-06 26.6 0.0 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix motif NPV_P10 PF05531.7 gi|452206120|ref|YP_007486242.1| - 0.055 13.7 2.7 0.085 13.1 1.8 1.4 1 1 0 1 1 1 0 Nucleopolyhedrovirus P10 protein CALCOCO1 PF07888.6 gi|452206120|ref|YP_007486242.1| - 0.18 10.0 6.8 0.23 9.7 4.7 1.1 1 0 0 1 1 1 0 Calcium binding and coiled-coil domain (CALCOCO1) like BLOC1_2 PF10046.4 gi|452206120|ref|YP_007486242.1| - 0.19 11.8 7.0 0.087 12.9 2.3 2.0 1 1 1 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 V_ATPase_I PF01496.14 gi|452206120|ref|YP_007486242.1| - 0.69 7.7 6.0 0.8 7.4 4.2 1.0 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family Syntaxin PF00804.20 gi|452206120|ref|YP_007486242.1| - 1.8 8.7 8.0 0.24 11.5 1.9 1.9 1 1 0 1 1 1 0 Syntaxin IncA PF04156.9 gi|452206120|ref|YP_007486242.1| - 2.4 7.7 11.2 2.8 7.4 7.8 1.1 1 0 0 1 1 1 0 IncA protein DivIC PF04977.10 gi|452206120|ref|YP_007486242.1| - 5.2 6.6 7.4 0.54 9.7 1.3 2.1 2 2 0 2 2 2 0 Septum formation initiator DUF927 PF06048.6 gi|452206123|ref|YP_007486245.1| - 0.00045 19.5 0.0 0.0031 16.8 0.0 2.2 1 1 0 1 1 1 1 Domain of unknown function (DUF927) AAA_16 PF13191.1 gi|452206123|ref|YP_007486245.1| - 0.0021 18.0 1.4 0.011 15.6 0.5 2.6 2 1 0 2 2 2 1 AAA ATPase domain AAA_21 PF13304.1 gi|452206123|ref|YP_007486245.1| - 0.0076 16.2 0.0 0.026 14.4 0.0 1.9 1 0 0 1 1 1 1 AAA domain UPF0079 PF02367.12 gi|452206123|ref|YP_007486245.1| - 0.008 15.8 0.0 0.027 14.1 0.0 2.0 2 0 0 2 2 2 1 Uncharacterised P-loop hydrolase UPF0079 ABC_tran PF00005.22 gi|452206123|ref|YP_007486245.1| - 0.057 13.7 0.1 0.24 11.6 0.0 2.1 1 1 0 1 1 1 0 ABC transporter Prim-Pol PF09250.6 gi|452206123|ref|YP_007486245.1| - 0.065 13.2 0.2 0.29 11.1 0.0 2.2 2 0 0 2 2 2 0 Bifunctional DNA primase/polymerase, N-terminal AAA_22 PF13401.1 gi|452206123|ref|YP_007486245.1| - 0.079 13.1 0.0 0.21 11.7 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|452206123|ref|YP_007486245.1| - 0.49 10.7 0.0 0.49 10.7 0.0 3.5 5 1 0 5 5 5 0 AAA domain AAA_23 PF13476.1 gi|452206123|ref|YP_007486245.1| - 0.64 10.3 7.2 0.037 14.3 0.2 2.5 2 2 0 2 2 2 0 AAA domain AAA_17 PF13207.1 gi|452206123|ref|YP_007486245.1| - 3.2 8.5 0.0 3.2 8.5 0.0 3.9 3 2 0 3 3 3 0 AAA domain Arg_repressor PF01316.16 gi|452206124|ref|YP_007486246.1| - 0.00032 20.1 3.7 1.9 8.0 0.0 3.9 4 0 0 4 4 4 3 Arginine repressor, DNA binding domain ESPR PF13018.1 gi|452206124|ref|YP_007486246.1| - 0.0027 17.2 0.4 0.015 14.9 0.1 2.3 2 0 0 2 2 2 1 Extended Signal Peptide of Type V secretion system HTH_Tnp_Tc3_2 PF01498.13 gi|452206124|ref|YP_007486246.1| - 0.0031 17.5 3.1 16 5.6 0.1 4.1 3 1 1 4 4 4 1 Transposase Pyr_excise PF03013.9 gi|452206124|ref|YP_007486246.1| - 0.008 15.9 0.6 0.021 14.5 0.3 1.8 1 1 1 2 2 2 1 Pyrimidine dimer DNA glycosylase FANCI_HD1 PF14679.1 gi|452206124|ref|YP_007486246.1| - 0.068 12.9 1.3 2.7 7.7 0.0 3.0 2 1 1 3 3 3 0 FANCI helical domain 1 SprT-like PF10263.4 gi|452206125|ref|YP_007486247.1| - 1.5e-08 34.4 5.0 2.9e-08 33.5 3.5 1.5 1 0 0 1 1 1 1 SprT-like family GerE PF00196.14 gi|452206125|ref|YP_007486247.1| - 2.7e-06 26.6 0.7 9e-06 24.9 0.1 2.0 2 0 0 2 2 2 1 Bacterial regulatory proteins, luxR family BSP PF04450.7 gi|452206125|ref|YP_007486247.1| - 0.00077 18.9 1.2 0.0012 18.3 0.3 1.7 2 0 0 2 2 2 1 Peptidase of plants and bacteria Sigma70_r4_2 PF08281.7 gi|452206125|ref|YP_007486247.1| - 0.0025 17.2 2.1 0.0028 17.1 0.2 2.1 3 0 0 3 3 3 1 Sigma-70, region 4 HTH_Tnp_ISL3 PF13542.1 gi|452206125|ref|YP_007486247.1| - 0.0091 15.1 1.4 0.15 11.2 0.2 3.4 3 1 1 4 4 4 1 Helix-turn-helix domain of transposase family ISL3 Peptidase_MA_2 PF13485.1 gi|452206125|ref|YP_007486247.1| - 0.011 15.8 0.7 0.024 14.6 0.5 1.7 1 0 0 1 1 1 0 Peptidase MA superfamily ERK-JNK_inhib PF15002.1 gi|452206125|ref|YP_007486247.1| - 0.018 14.4 0.6 0.03 13.6 0.4 1.3 1 0 0 1 1 1 0 ERK and JNK pathways, inhibitor Sigma70_r4 PF04545.11 gi|452206125|ref|YP_007486247.1| - 0.026 13.8 2.4 0.052 12.8 0.2 2.6 3 0 0 3 3 3 0 Sigma-70, region 4 HTH_23 PF13384.1 gi|452206125|ref|YP_007486247.1| - 0.028 14.0 2.8 0.039 13.6 0.1 2.4 3 0 0 3 3 3 0 Homeodomain-like domain DUF4157 PF13699.1 gi|452206125|ref|YP_007486247.1| - 0.047 13.8 0.6 0.12 12.5 0.4 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4157) GerE PF00196.14 gi|452206127|ref|YP_007486249.1| - 7.7e-06 25.1 0.1 1.3e-05 24.3 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family TFX_C PF14601.1 gi|452206127|ref|YP_007486249.1| - 0.0079 15.9 0.1 0.99 9.2 0.0 2.4 2 0 0 2 2 2 1 DNA_binding protein, TFX, C-term HTH_10 PF04967.7 gi|452206127|ref|YP_007486249.1| - 0.018 14.5 0.0 0.043 13.3 0.0 1.6 1 0 0 1 1 1 0 HTH DNA binding domain Sigma70_r4 PF04545.11 gi|452206127|ref|YP_007486249.1| - 0.031 13.5 0.0 0.074 12.3 0.0 1.7 1 0 0 1 1 1 0 Sigma-70, region 4 DUF1019 PF06254.6 gi|452206127|ref|YP_007486249.1| - 0.034 14.3 0.1 0.18 12.0 0.0 2.3 3 0 0 3 3 3 0 Protein of unknown function (DUF1019) Rad60-SLD PF11976.3 gi|452206127|ref|YP_007486249.1| - 0.04 13.6 0.0 0.14 11.8 0.0 1.9 1 0 0 1 1 1 0 Ubiquitin-2 like Rad60 SUMO-like Sigma70_r4_2 PF08281.7 gi|452206127|ref|YP_007486249.1| - 0.055 12.9 0.0 0.12 11.9 0.0 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_40 PF14493.1 gi|452206127|ref|YP_007486249.1| - 0.068 13.3 0.7 0.21 11.8 0.2 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain Kinesin PF00225.18 gi|452206127|ref|YP_007486249.1| - 0.09 11.4 0.0 0.19 10.4 0.0 1.5 1 0 0 1 1 1 0 Kinesin motor domain DZR PF12773.2 gi|452206128|ref|YP_007486250.1| - 7.1e-05 22.5 9.1 0.00066 19.4 1.2 2.3 1 1 1 2 2 2 2 Double zinc ribbon Ecl1 PF12855.2 gi|452206128|ref|YP_007486250.1| - 0.06 12.6 11.4 0.1 11.9 5.9 2.4 1 1 1 2 2 2 0 Life-span regulatory factor C1_1 PF00130.17 gi|452206128|ref|YP_007486250.1| - 0.26 11.0 7.1 0.39 10.4 0.3 2.4 1 1 1 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Metallothio_Pro PF02069.11 gi|452206128|ref|YP_007486250.1| - 0.36 10.6 5.3 0.71 9.7 3.7 1.4 1 0 0 1 1 1 0 Prokaryotic metallothionein DiS_P_DiS PF06750.8 gi|452206128|ref|YP_007486250.1| - 0.5 10.1 2.9 2.4 8.0 0.3 2.5 1 1 1 2 2 2 0 Bacterial Peptidase A24 N-terminal domain DUF2116 PF09889.4 gi|452206128|ref|YP_007486250.1| - 0.93 9.3 6.5 0.82 9.5 3.2 1.9 1 1 0 1 1 1 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) zinc-ribbons_6 PF07191.7 gi|452206128|ref|YP_007486250.1| - 2.2 8.1 11.7 1.2 8.9 4.7 2.2 1 1 1 2 2 2 0 zinc-ribbons Cript PF10235.4 gi|452206128|ref|YP_007486250.1| - 4.6 7.6 7.5 7.5 6.9 2.2 2.5 1 1 1 2 2 2 0 Microtubule-associated protein CRIPT zf-AD PF07776.10 gi|452206128|ref|YP_007486250.1| - 5.3 7.1 10.8 41 4.2 7.5 2.8 1 1 0 1 1 1 0 Zinc-finger associated domain (zf-AD) zf-dskA_traR PF01258.12 gi|452206128|ref|YP_007486250.1| - 7.1 6.4 13.1 4.9 6.9 0.0 3.4 2 1 1 3 3 3 0 Prokaryotic dksA/traR C4-type zinc finger HSDR_N_2 PF13588.1 gi|452206129|ref|YP_007486251.1| - 9.3e-09 35.0 0.0 1.8e-08 34.1 0.0 1.5 1 0 0 1 1 1 1 Type I restriction enzyme R protein N terminus (HSDR_N) HSDR_N PF04313.9 gi|452206129|ref|YP_007486251.1| - 2.2e-05 24.3 0.9 0.00053 19.7 0.0 2.8 2 1 1 3 3 3 1 Type I restriction enzyme R protein N terminus (HSDR_N) PDDEXK_3 PF13366.1 gi|452206129|ref|YP_007486251.1| - 0.0019 18.2 0.0 0.008 16.2 0.0 1.9 1 1 1 2 2 2 1 PD-(D/E)XK nuclease superfamily Toxin_52 PF15605.1 gi|452206129|ref|YP_007486251.1| - 0.019 14.8 0.1 0.059 13.2 0.0 1.8 2 0 0 2 2 2 0 Putative toxin 52 TBP PF00352.16 gi|452206131|ref|YP_007486253.1| - 6.3e-32 108.7 0.0 3.1e-21 74.5 0.0 2.1 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) Methyltransf_26 PF13659.1 gi|452206132|ref|YP_007486254.1| - 8.8e-10 38.6 0.0 2.5e-09 37.1 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain Eco57I PF07669.6 gi|452206132|ref|YP_007486254.1| - 4.7e-07 30.1 0.0 0.0031 17.8 0.0 2.9 2 0 0 2 2 2 2 Eco57I restriction-modification methylase N6_Mtase PF02384.11 gi|452206132|ref|YP_007486254.1| - 1.7e-05 24.0 0.0 0.27 10.2 0.0 4.0 4 1 0 4 4 4 2 N-6 DNA Methylase UPF0020 PF01170.13 gi|452206132|ref|YP_007486254.1| - 0.071 12.6 0.0 1.9 8.0 0.0 2.5 2 0 0 2 2 2 0 Putative RNA methylase family UPF0020 PLDc_2 PF13091.1 gi|452206133|ref|YP_007486255.1| - 3.7e-20 71.9 0.7 3.2e-19 68.9 0.0 2.7 3 0 0 3 3 3 1 PLD-like domain SNF2_N PF00176.18 gi|452206133|ref|YP_007486255.1| - 4.9e-16 58.4 0.1 3.4e-15 55.6 0.1 2.0 1 1 0 1 1 1 1 SNF2 family N-terminal domain Helicase_C PF00271.26 gi|452206133|ref|YP_007486255.1| - 1.7e-14 53.4 0.4 6.5e-14 51.5 0.0 2.2 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|452206133|ref|YP_007486255.1| - 2.8e-12 46.8 0.1 2.8e-12 46.8 0.1 3.2 3 1 0 3 3 3 1 Type III restriction enzyme, res subunit DUF2075 PF09848.4 gi|452206133|ref|YP_007486255.1| - 1e-05 24.6 1.3 3.2e-05 23.0 0.0 2.2 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) DEAD PF00270.24 gi|452206133|ref|YP_007486255.1| - 0.00038 20.0 0.0 0.0031 17.0 0.0 2.5 1 1 0 1 1 1 1 DEAD/DEAH box helicase AAA_22 PF13401.1 gi|452206133|ref|YP_007486255.1| - 0.0016 18.5 0.1 0.018 15.1 0.0 2.6 2 0 0 2 2 2 1 AAA domain Lar_restr_allev PF14354.1 gi|452206134|ref|YP_007486256.1| - 0.00011 22.4 0.8 0.00014 22.0 0.6 1.2 1 0 0 1 1 1 1 Restriction alleviation protein Lar FdhE PF04216.7 gi|452206134|ref|YP_007486256.1| - 0.0038 16.9 0.3 0.004 16.9 0.2 1.0 1 0 0 1 1 1 1 Protein involved in formate dehydrogenase formation zf-RING_3 PF14369.1 gi|452206134|ref|YP_007486256.1| - 0.0062 16.5 1.5 0.93 9.5 0.1 2.2 2 0 0 2 2 2 2 zinc-finger Zn-ribbon_8 PF09723.5 gi|452206134|ref|YP_007486256.1| - 0.0068 16.3 1.3 0.28 11.1 0.1 2.1 2 0 0 2 2 2 1 Zinc ribbon domain DZR PF12773.2 gi|452206134|ref|YP_007486256.1| - 0.0073 16.0 0.6 0.012 15.4 0.4 1.4 1 1 0 1 1 1 1 Double zinc ribbon zf-C3HC4_3 PF13920.1 gi|452206134|ref|YP_007486256.1| - 0.031 13.9 0.2 0.7 9.6 0.0 2.0 2 0 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) FANCL_C PF11793.3 gi|452206134|ref|YP_007486256.1| - 0.034 14.0 0.4 0.51 10.3 0.0 2.0 2 0 0 2 2 2 0 FANCL C-terminal domain Zn_Tnp_IS1595 PF12760.2 gi|452206134|ref|YP_007486256.1| - 0.042 13.6 0.7 0.094 12.5 0.5 1.6 1 1 0 1 1 1 0 Transposase zinc-ribbon domain zf-C2HC5 PF06221.8 gi|452206134|ref|YP_007486256.1| - 0.077 12.7 1.6 1.6 8.5 0.1 2.1 1 1 1 2 2 2 0 Putative zinc finger motif, C2HC5-type Cys_rich_CPXG PF14255.1 gi|452206134|ref|YP_007486256.1| - 0.078 12.8 1.3 0.11 12.3 0.9 1.3 1 1 0 1 1 1 0 Cysteine-rich CPXCG Arc_trans_TRASH PF08394.5 gi|452206134|ref|YP_007486256.1| - 0.099 12.8 0.1 0.16 12.1 0.1 1.4 1 1 0 1 1 1 0 Archaeal TRASH domain Elf1 PF05129.8 gi|452206134|ref|YP_007486256.1| - 0.1 12.2 0.2 0.11 12.1 0.1 1.1 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like zf-Di19 PF05605.7 gi|452206134|ref|YP_007486256.1| - 0.13 12.4 0.3 0.14 12.2 0.2 1.3 1 1 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding TFIIS_C PF01096.13 gi|452206134|ref|YP_007486256.1| - 0.16 11.6 1.5 1.7 8.3 0.3 2.0 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-ribbon_3 PF13248.1 gi|452206134|ref|YP_007486256.1| - 0.25 10.6 2.9 0.59 9.4 2.0 1.8 1 1 0 1 1 1 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|452206134|ref|YP_007486256.1| - 0.57 9.5 3.1 1.2 8.4 2.1 1.6 1 1 0 1 1 1 0 TFIIB zinc-binding CBM_11 PF03425.8 gi|452206137|ref|YP_007486259.1| - 0.047 13.3 0.0 0.055 13.1 0.0 1.2 1 0 0 1 1 1 0 Carbohydrate binding domain (family 11) EAP30 PF04157.11 gi|452206138|ref|YP_007486260.1| - 0.1 11.7 0.0 0.11 11.6 0.0 1.1 1 0 0 1 1 1 0 EAP30/Vps36 family OrfB_Zn_ribbon PF07282.6 gi|452206140|ref|YP_007486262.1| - 1.1e-22 79.4 0.2 1.9e-22 78.7 0.2 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|452206140|ref|YP_007486262.1| - 0.0029 17.0 0.0 0.0042 16.5 0.0 1.2 1 0 0 1 1 1 1 Probable transposase Y1_Tnp PF01797.11 gi|452206141|ref|YP_007486263.1| - 3e-37 127.1 0.0 3.4e-37 126.9 0.0 1.0 1 0 0 1 1 1 1 Transposase IS200 like DNase-RNase PF02577.9 gi|452206142|ref|YP_007486264.1| - 9.5e-36 122.0 0.0 1.1e-35 121.8 0.0 1.0 1 0 0 1 1 1 1 Bifunctional nuclease Bac_rhodopsin PF01036.13 gi|452206145|ref|YP_007486267.1| - 1e-60 204.8 24.5 1.2e-60 204.6 17.0 1.0 1 0 0 1 1 1 1 Bacteriorhodopsin-like protein Colicin_im PF03857.8 gi|452206145|ref|YP_007486267.1| - 0.23 11.1 2.2 4.5 7.0 0.0 2.4 2 0 0 2 2 2 0 Colicin immunity protein Polyketide_cyc2 PF10604.4 gi|452206146|ref|YP_007486268.1| - 1.6e-17 63.9 0.1 1.8e-17 63.7 0.1 1.0 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc PF03364.15 gi|452206146|ref|YP_007486268.1| - 2.5e-07 30.7 0.0 3e-07 30.4 0.0 1.1 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport AHSA1 PF08327.6 gi|452206146|ref|YP_007486268.1| - 5.7e-05 23.2 0.0 6e-05 23.1 0.0 1.2 1 0 0 1 1 1 1 Activator of Hsp90 ATPase homolog 1-like protein COXG PF06240.8 gi|452206146|ref|YP_007486268.1| - 0.0013 18.4 0.0 0.0025 17.4 0.0 1.6 1 1 0 1 1 1 1 Carbon monoxide dehydrogenase subunit G (CoxG) BCD PF15461.1 gi|452206147|ref|YP_007486269.1| - 2.7e-69 233.4 23.2 2.7e-69 233.4 16.1 1.7 2 0 0 2 2 2 1 Beta-carotene 15,15'-dioxygenase PAS_9 PF13426.1 gi|452206149|ref|YP_007486271.1| - 3.5e-28 98.0 0.0 1.1e-27 96.4 0.0 1.9 1 0 0 1 1 1 1 PAS domain HTH_10 PF04967.7 gi|452206149|ref|YP_007486271.1| - 2.9e-19 68.3 0.0 6e-19 67.3 0.0 1.6 1 0 0 1 1 1 1 HTH DNA binding domain Response_reg PF00072.19 gi|452206149|ref|YP_007486271.1| - 4.3e-12 46.0 0.0 1.2e-11 44.5 0.0 1.7 1 0 0 1 1 1 1 Response regulator receiver domain PAS_4 PF08448.5 gi|452206149|ref|YP_007486271.1| - 4.7e-11 42.6 0.2 2.9e-10 40.1 0.0 2.5 2 0 0 2 2 2 1 PAS fold GAF_2 PF13185.1 gi|452206149|ref|YP_007486271.1| - 5e-09 36.8 1.8 1.6e-08 35.1 0.1 2.6 3 0 0 3 3 3 1 GAF domain PAS PF00989.19 gi|452206149|ref|YP_007486271.1| - 5.8e-08 32.5 0.0 1.9e-07 30.8 0.0 2.0 1 0 0 1 1 1 1 PAS fold PAS_3 PF08447.6 gi|452206149|ref|YP_007486271.1| - 1.3e-06 28.4 0.0 4.8e-06 26.5 0.0 2.0 2 0 0 2 2 2 1 PAS fold PAS_8 PF13188.1 gi|452206149|ref|YP_007486271.1| - 1.6e-05 24.6 0.0 4.3e-05 23.1 0.0 1.8 1 0 0 1 1 1 1 PAS domain GAF_3 PF13492.1 gi|452206149|ref|YP_007486271.1| - 0.0023 18.0 0.3 0.049 13.7 0.0 2.7 3 0 0 3 3 3 1 GAF domain OKR_DC_1_N PF03709.10 gi|452206149|ref|YP_007486271.1| - 0.0064 16.5 0.3 0.044 13.8 0.0 2.4 2 0 0 2 2 2 1 Orn/Lys/Arg decarboxylase, N-terminal domain DUF134 PF02001.11 gi|452206149|ref|YP_007486271.1| - 0.012 15.4 0.0 0.034 14.0 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function DUF134 HTH_11 PF08279.7 gi|452206149|ref|YP_007486271.1| - 0.068 12.8 0.0 0.19 11.4 0.0 1.7 1 0 0 1 1 1 0 HTH domain Usp PF00582.21 gi|452206150|ref|YP_007486272.1| - 1.8e-33 115.7 3.9 2e-33 115.5 2.7 1.0 1 0 0 1 1 1 1 Universal stress protein family Radical_SAM PF04055.16 gi|452206150|ref|YP_007486272.1| - 0.1 12.7 0.0 0.13 12.4 0.0 1.2 1 0 0 1 1 1 0 Radical SAM superfamily Dodecin PF07311.7 gi|452206150|ref|YP_007486272.1| - 0.14 12.2 0.2 0.14 12.2 0.1 2.1 1 1 1 2 2 2 0 Dodecin AP_endonuc_2 PF01261.19 gi|452206150|ref|YP_007486272.1| - 0.25 10.5 2.7 1.4 8.1 1.9 2.0 1 1 0 1 1 1 0 Xylose isomerase-like TIM barrel Creatininase PF02633.9 gi|452206151|ref|YP_007486273.1| - 4.6e-66 222.2 0.9 5.4e-66 222.0 0.6 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase Ribosomal_L16 PF00252.13 gi|452206152|ref|YP_007486274.1| - 3.1e-28 98.1 0.0 3.6e-28 97.9 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L16p/L10e Cpn60_TCP1 PF00118.19 gi|452206153|ref|YP_007486275.1| - 2.3e-145 484.9 6.1 2.6e-145 484.7 4.2 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family GPP34 PF05719.6 gi|452206154|ref|YP_007486276.1| - 0.017 15.2 0.0 0.022 14.8 0.0 1.2 1 0 0 1 1 1 0 Golgi phosphoprotein 3 (GPP34) LexA_DNA_bind PF01726.11 gi|452206154|ref|YP_007486276.1| - 0.057 12.9 0.0 15 5.2 0.0 3.1 2 1 1 3 3 3 0 LexA DNA binding domain CN_hydrolase PF00795.17 gi|452206156|ref|YP_007486278.1| - 1.6e-23 83.0 0.0 2.1e-23 82.6 0.0 1.1 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase DUF3875 PF12991.2 gi|452206156|ref|YP_007486278.1| - 0.049 13.3 0.0 3 7.5 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function, B. Theta Gene description (DUF3875) Polyketide_cyc2 PF10604.4 gi|452206157|ref|YP_007486279.1| - 1.2e-14 54.7 1.5 1.3e-14 54.5 1.0 1.0 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport COXG PF06240.8 gi|452206157|ref|YP_007486279.1| - 1.6e-05 24.5 0.0 2.6e-05 23.9 0.0 1.3 1 1 0 1 1 1 1 Carbon monoxide dehydrogenase subunit G (CoxG) Polyketide_cyc PF03364.15 gi|452206157|ref|YP_007486279.1| - 0.013 15.4 0.3 0.023 14.6 0.2 1.6 1 1 0 1 1 1 0 Polyketide cyclase / dehydrase and lipid transport AHSA1 PF08327.6 gi|452206157|ref|YP_007486279.1| - 0.014 15.4 0.0 0.048 13.7 0.0 2.1 1 1 0 1 1 1 0 Activator of Hsp90 ATPase homolog 1-like protein DUF2505 PF10698.4 gi|452206157|ref|YP_007486279.1| - 0.046 13.2 0.0 2.8 7.4 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2505) HTH_24 PF13412.1 gi|452206158|ref|YP_007486280.1| - 0.012 14.9 0.2 0.039 13.3 0.1 1.8 1 1 0 1 1 1 0 Winged helix-turn-helix DNA-binding Put_DNA-bind_N PF06971.8 gi|452206158|ref|YP_007486280.1| - 0.022 14.4 0.0 0.043 13.5 0.0 1.5 1 0 0 1 1 1 0 Putative DNA-binding protein N-terminus HTH_36 PF13730.1 gi|452206158|ref|YP_007486280.1| - 0.025 14.6 0.0 0.035 14.2 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_AsnC-type PF13404.1 gi|452206158|ref|YP_007486280.1| - 0.045 13.2 0.4 0.5 9.9 0.3 2.1 1 1 0 1 1 1 0 AsnC-type helix-turn-helix domain YqzM PF14141.1 gi|452206159|ref|YP_007486281.1| - 0.37 10.6 2.3 0.65 9.8 1.6 1.4 1 1 0 1 1 1 0 YqzM-like protein DsbB PF02600.11 gi|452206159|ref|YP_007486281.1| - 7.1 6.3 6.4 8.3 6.1 4.4 1.1 1 0 0 1 1 1 0 Disulfide bond formation protein DsbB zf-ribbon_3 PF13248.1 gi|452206160|ref|YP_007486282.1| - 0.0024 16.9 2.2 0.0092 15.1 1.7 1.8 1 1 1 2 2 2 1 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|452206160|ref|YP_007486282.1| - 0.014 14.6 1.1 0.16 11.3 0.1 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding DZR PF12773.2 gi|452206160|ref|YP_007486282.1| - 0.021 14.6 0.3 0.033 13.9 0.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon Ribosomal_S27e PF01667.12 gi|452206160|ref|YP_007486282.1| - 0.031 13.8 0.4 0.093 12.2 0.0 1.8 2 0 0 2 2 2 0 Ribosomal protein S27 zinc_ribbon_2 PF13240.1 gi|452206160|ref|YP_007486282.1| - 0.038 13.4 0.9 0.67 9.5 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-NADH-PPase PF09297.6 gi|452206160|ref|YP_007486282.1| - 0.04 13.4 3.2 1.5 8.4 0.2 2.3 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zf-ISL3 PF14690.1 gi|452206160|ref|YP_007486282.1| - 0.12 12.3 0.3 1.6 8.8 0.1 2.1 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Ogr_Delta PF04606.7 gi|452206160|ref|YP_007486282.1| - 0.23 11.1 0.9 1.4 8.6 0.1 2.1 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger zinc_ribbon_5 PF13719.1 gi|452206160|ref|YP_007486282.1| - 0.66 9.6 2.1 3.9 7.1 1.5 2.1 1 1 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|452206160|ref|YP_007486282.1| - 0.75 9.5 2.3 5 6.9 1.6 2.1 1 1 0 1 1 1 0 zinc-ribbon domain DUF457 PF04307.9 gi|452206161|ref|YP_007486283.1| - 2.3e-13 49.7 9.2 3e-13 49.4 6.4 1.2 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) ATP-synt_D PF01813.12 gi|452206162|ref|YP_007486284.1| - 5.1e-63 212.1 10.3 7.5e-63 211.6 7.1 1.2 1 0 0 1 1 1 1 ATP synthase subunit D RICH PF05062.7 gi|452206162|ref|YP_007486284.1| - 0.021 14.9 7.8 0.08 13.0 5.4 2.0 1 0 0 1 1 1 0 RICH domain ATP-synt_ab PF00006.20 gi|452206163|ref|YP_007486285.1| - 2.3e-59 200.5 0.0 3e-59 200.1 0.0 1.1 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_C PF00306.22 gi|452206163|ref|YP_007486285.1| - 7e-17 61.9 0.4 1.4e-16 60.9 0.3 1.5 1 0 0 1 1 1 1 ATP synthase alpha/beta chain, C terminal domain ATP-synt_ab_N PF02874.18 gi|452206163|ref|YP_007486285.1| - 4.8e-12 45.8 0.2 1.2e-11 44.6 0.2 1.7 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain HAS-barrel PF09378.5 gi|452206163|ref|YP_007486285.1| - 0.0016 18.3 0.5 0.0082 16.0 0.3 2.4 1 1 1 2 2 2 1 HAS barrel domain ATP-synt_ab PF00006.20 gi|452206164|ref|YP_007486286.1| - 1.7e-94 315.3 0.0 2.5e-94 314.7 0.0 1.3 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_C PF00306.22 gi|452206164|ref|YP_007486286.1| - 4.9e-19 68.8 0.5 9.2e-19 67.9 0.3 1.4 1 0 0 1 1 1 1 ATP synthase alpha/beta chain, C terminal domain ATP-synt_ab_N PF02874.18 gi|452206164|ref|YP_007486286.1| - 7.3e-12 45.3 4.1 7.3e-12 45.3 2.8 2.1 2 0 0 2 2 2 1 ATP synthase alpha/beta family, beta-barrel domain Peptidase_M23 PF01551.17 gi|452206164|ref|YP_007486286.1| - 0.026 14.5 0.1 11 6.1 0.0 2.5 2 0 0 2 2 2 0 Peptidase family M23 AAA_22 PF13401.1 gi|452206164|ref|YP_007486286.1| - 0.091 12.9 0.0 0.21 11.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain ATP-synt_F PF01990.12 gi|452206165|ref|YP_007486287.1| - 4.4e-19 68.6 0.2 5.4e-19 68.3 0.1 1.1 1 0 0 1 1 1 1 ATP synthase (F/14-kDa) subunit Fe-ADH_2 PF13685.1 gi|452206165|ref|YP_007486287.1| - 0.051 12.8 0.1 0.061 12.6 0.1 1.0 1 0 0 1 1 1 0 Iron-containing alcohol dehydrogenase Tubulin_2 PF13809.1 gi|452206165|ref|YP_007486287.1| - 0.11 11.3 0.0 0.11 11.3 0.0 1.1 1 0 0 1 1 1 0 Tubulin like T2SE_Nter PF05157.10 gi|452206165|ref|YP_007486287.1| - 0.13 12.2 0.2 0.21 11.6 0.1 1.4 1 0 0 1 1 1 0 Type II secretion system (T2SS), protein E, N-terminal domain vATP-synt_AC39 PF01992.11 gi|452206166|ref|YP_007486288.1| - 9.5e-90 301.1 0.1 1.1e-89 300.9 0.1 1.0 1 0 0 1 1 1 1 ATP synthase (C/AC39) subunit TFIIA_gamma_N PF02268.11 gi|452206166|ref|YP_007486288.1| - 0.13 11.9 0.2 4.9 6.8 0.1 3.1 3 0 0 3 3 3 0 Transcription initiation factor IIA, gamma subunit, helical domain vATP-synt_E PF01991.13 gi|452206167|ref|YP_007486289.1| - 7.6e-41 139.5 9.0 9.8e-41 139.2 6.2 1.1 1 0 0 1 1 1 1 ATP synthase (E/31 kDa) subunit OmpH PF03938.9 gi|452206167|ref|YP_007486289.1| - 0.062 13.2 9.0 0.087 12.7 6.2 1.2 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) DUF3552 PF12072.3 gi|452206167|ref|YP_007486289.1| - 0.16 11.1 18.3 0.24 10.5 12.7 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3552) ATP-synt_B PF00430.13 gi|452206167|ref|YP_007486289.1| - 0.22 11.3 20.7 2.1 8.1 13.6 2.4 1 1 1 2 2 2 0 ATP synthase B/B' CF(0) V_ATPase_I PF01496.14 gi|452206167|ref|YP_007486289.1| - 0.27 9.0 1.7 0.34 8.7 1.2 1.2 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family Apolipoprotein PF01442.13 gi|452206167|ref|YP_007486289.1| - 0.29 10.6 13.6 0.65 9.4 9.4 1.5 1 1 0 1 1 1 0 Apolipoprotein A1/A4/E domain V-ATPase_G PF03179.10 gi|452206167|ref|YP_007486289.1| - 0.46 10.8 14.8 0.76 10.1 9.8 1.8 1 1 0 1 1 1 0 Vacuolar (H+)-ATPase G subunit IpaD PF06511.6 gi|452206167|ref|YP_007486289.1| - 0.49 9.3 2.5 0.59 9.0 1.7 1.1 1 0 0 1 1 1 0 Invasion plasmid antigen IpaD HrpE PF06188.7 gi|452206167|ref|YP_007486289.1| - 1.1 8.9 10.8 2.6 7.7 7.5 1.6 1 1 0 1 1 1 0 HrpE/YscL/FliH and V-type ATPase subunit E DUF4407 PF14362.1 gi|452206167|ref|YP_007486289.1| - 1.2 8.0 8.7 1.4 7.7 6.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) DivIVA PF05103.8 gi|452206167|ref|YP_007486289.1| - 1.6 8.7 14.4 0.26 11.3 4.5 2.3 1 1 1 2 2 2 0 DivIVA protein DUF724 PF05266.9 gi|452206167|ref|YP_007486289.1| - 1.7 8.2 6.3 3.1 7.3 4.4 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF724) DUF3840 PF12944.2 gi|452206167|ref|YP_007486289.1| - 1.7 8.5 4.8 1.5 8.6 2.3 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF3840) ISG65-75 PF11727.3 gi|452206167|ref|YP_007486289.1| - 2 7.4 6.5 2.8 6.8 4.5 1.3 1 0 0 1 1 1 0 Invariant surface glycoprotein Toxin_43 PF15604.1 gi|452206167|ref|YP_007486289.1| - 2.3 8.2 7.1 2.8 7.9 4.2 1.6 1 1 0 1 1 1 0 Putative toxin 43 DUF883 PF05957.8 gi|452206167|ref|YP_007486289.1| - 5.5 7.4 15.8 0.58 10.5 4.8 2.5 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) ATP-synt_C PF00137.16 gi|452206168|ref|YP_007486290.1| - 1.5e-15 56.8 10.9 2.3e-15 56.2 7.5 1.3 1 0 0 1 1 1 1 ATP synthase subunit C V_ATPase_I PF01496.14 gi|452206169|ref|YP_007486291.1| - 7e-68 229.2 26.5 1.9e-30 105.4 7.5 5.7 4 1 1 5 5 5 5 V-type ATPase 116kDa subunit family FlaC_arch PF05377.6 gi|452206169|ref|YP_007486291.1| - 0.0005 19.9 2.3 0.58 10.0 0.5 2.5 2 0 0 2 2 2 2 Flagella accessory protein C (FlaC) Tropomyosin_1 PF12718.2 gi|452206169|ref|YP_007486291.1| - 0.013 15.3 3.8 0.13 12.1 0.1 2.3 2 0 0 2 2 2 0 Tropomyosin like DUF4164 PF13747.1 gi|452206169|ref|YP_007486291.1| - 0.019 15.1 6.4 0.85 9.7 0.0 2.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4164) MscS_porin PF12795.2 gi|452206169|ref|YP_007486291.1| - 0.21 10.8 0.6 1 8.6 0.0 1.9 2 0 0 2 2 2 0 Mechanosensitive ion channel porin domain Prefoldin_2 PF01920.15 gi|452206169|ref|YP_007486291.1| - 0.21 11.3 2.6 11 5.9 0.2 2.3 2 0 0 2 2 2 0 Prefoldin subunit TBPIP PF07106.8 gi|452206169|ref|YP_007486291.1| - 0.27 10.7 0.6 4.5 6.7 0.0 2.1 2 0 0 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Spc24 PF08286.6 gi|452206169|ref|YP_007486291.1| - 0.44 10.2 1.5 1.9 8.2 0.0 2.3 3 0 0 3 3 3 0 Spc24 subunit of Ndc80 CENP-F_leu_zip PF10473.4 gi|452206169|ref|YP_007486291.1| - 1.5 8.6 5.7 15 5.3 0.7 2.3 2 0 0 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF3086 PF11285.3 gi|452206169|ref|YP_007486291.1| - 3.1 6.5 5.2 0.41 9.4 0.0 2.1 3 0 0 3 3 3 0 Protein of unknown function (DUF3086) ATP-synt_B PF00430.13 gi|452206170|ref|YP_007486292.1| - 6.5e-05 22.7 23.4 0.00016 21.4 16.1 1.6 1 1 1 2 2 2 1 ATP synthase B/B' CF(0) DUF3552 PF12072.3 gi|452206170|ref|YP_007486292.1| - 0.00079 18.7 27.4 0.0027 16.9 15.5 2.0 1 1 1 2 2 2 2 Domain of unknown function (DUF3552) V-ATPase_G PF03179.10 gi|452206170|ref|YP_007486292.1| - 0.0072 16.6 24.5 0.055 13.7 17.0 1.9 1 1 0 1 1 1 1 Vacuolar (H+)-ATPase G subunit HrpE PF06188.7 gi|452206170|ref|YP_007486292.1| - 0.13 12.0 13.9 0.28 10.9 9.7 1.5 1 1 0 1 1 1 0 HrpE/YscL/FliH and V-type ATPase subunit E DUF883 PF05957.8 gi|452206170|ref|YP_007486292.1| - 0.41 11.0 16.7 0.93 9.9 4.3 2.1 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) Atg14 PF10186.4 gi|452206170|ref|YP_007486292.1| - 0.71 8.7 7.1 0.79 8.6 4.9 1.1 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 Isy1 PF06246.7 gi|452206170|ref|YP_007486292.1| - 1 8.7 10.8 1.3 8.4 7.5 1.1 1 0 0 1 1 1 0 Isy1-like splicing family DivIVA PF05103.8 gi|452206170|ref|YP_007486292.1| - 1.5 8.9 18.7 1.1 9.3 8.3 2.0 1 1 1 2 2 2 0 DivIVA protein GBP_C PF02841.9 gi|452206170|ref|YP_007486292.1| - 1.8 7.6 13.3 2.2 7.4 9.2 1.1 1 0 0 1 1 1 0 Guanylate-binding protein, C-terminal domain DUF3435 PF11917.3 gi|452206170|ref|YP_007486292.1| - 2.3 6.8 8.7 2.4 6.7 6.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3435) Caudo_TAP PF02413.12 gi|452206170|ref|YP_007486292.1| - 2.7 8.1 14.7 2e+02 2.0 0.2 2.4 1 1 1 2 2 2 0 Caudovirales tail fibre assembly protein KfrA_N PF11740.3 gi|452206170|ref|YP_007486292.1| - 2.7 8.4 29.3 8.7 6.8 12.1 2.2 1 1 1 2 2 2 0 Plasmid replication region DNA-binding N-term PDDEXK_1 PF12705.2 gi|452206170|ref|YP_007486292.1| - 4.4 6.6 7.4 5.3 6.3 5.1 1.1 1 0 0 1 1 1 0 PD-(D/E)XK nuclease superfamily Mnd1 PF03962.10 gi|452206170|ref|YP_007486292.1| - 5.7 6.5 10.2 7.2 6.2 7.1 1.2 1 0 0 1 1 1 0 Mnd1 family eIF-6 PF01912.13 gi|452206171|ref|YP_007486293.1| - 3.8e-69 231.7 0.0 4.3e-69 231.5 0.0 1.0 1 0 0 1 1 1 1 eIF-6 family Ribosomal_L31e PF01198.14 gi|452206172|ref|YP_007486294.1| - 3.4e-24 84.3 0.2 3.9e-24 84.1 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L31e Ribosomal_L39 PF00832.15 gi|452206173|ref|YP_007486295.1| - 1e-18 66.5 8.0 1.2e-18 66.2 5.6 1.1 1 0 0 1 1 1 1 Ribosomal L39 protein TrmB PF01978.14 gi|452206174|ref|YP_007486296.1| - 6e-15 54.6 0.0 8e-15 54.3 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|452206174|ref|YP_007486296.1| - 2e-07 30.4 0.0 3.5e-07 29.6 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_11 PF08279.7 gi|452206174|ref|YP_007486296.1| - 1.9e-06 27.3 0.0 3e-06 26.7 0.0 1.3 1 0 0 1 1 1 1 HTH domain Penicillinase_R PF03965.11 gi|452206174|ref|YP_007486296.1| - 1.1e-05 25.4 0.0 1.5e-05 25.0 0.0 1.1 1 0 0 1 1 1 1 Penicillinase repressor MarR_2 PF12802.2 gi|452206174|ref|YP_007486296.1| - 1.3e-05 24.7 0.0 2e-05 24.1 0.0 1.3 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|452206174|ref|YP_007486296.1| - 2.5e-05 23.8 0.0 4.4e-05 23.0 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_38 PF13936.1 gi|452206174|ref|YP_007486296.1| - 4.3e-05 22.9 0.0 9e-05 21.9 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|452206174|ref|YP_007486296.1| - 9e-05 21.7 0.0 0.00013 21.2 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|452206174|ref|YP_007486296.1| - 0.00013 21.6 0.0 0.00023 20.8 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|452206174|ref|YP_007486296.1| - 0.0023 17.5 0.0 0.0036 16.9 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_27 PF13463.1 gi|452206174|ref|YP_007486296.1| - 0.0026 18.0 0.0 0.0037 17.5 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain RuvB_C PF05491.8 gi|452206174|ref|YP_007486296.1| - 0.0034 16.9 0.0 0.006 16.1 0.0 1.3 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB C-terminus HTH_23 PF13384.1 gi|452206174|ref|YP_007486296.1| - 0.006 16.1 0.0 0.01 15.4 0.0 1.3 1 0 0 1 1 1 1 Homeodomain-like domain Fe_dep_repress PF01325.14 gi|452206174|ref|YP_007486296.1| - 0.01 15.7 0.1 0.023 14.5 0.0 1.6 2 0 0 2 2 1 0 Iron dependent repressor, N-terminal DNA binding domain 2OG-Fe_Oxy_2 PF10014.4 gi|452206174|ref|YP_007486296.1| - 0.011 15.0 0.1 0.014 14.7 0.0 1.2 1 0 0 1 1 1 0 2OG-Fe dioxygenase PqqD PF05402.7 gi|452206174|ref|YP_007486296.1| - 0.014 15.3 0.4 1.1 9.3 0.0 2.8 2 1 1 3 3 3 0 Coenzyme PQQ synthesis protein D (PqqD) Rrf2 PF02082.15 gi|452206174|ref|YP_007486296.1| - 0.03 14.4 0.0 0.06 13.4 0.0 1.5 2 0 0 2 2 1 0 Transcriptional regulator HTH_28 PF13518.1 gi|452206174|ref|YP_007486296.1| - 0.034 14.1 0.0 0.074 13.0 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_29 PF13551.1 gi|452206174|ref|YP_007486296.1| - 0.037 14.1 0.0 0.048 13.8 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn helix TFIIE_beta PF02186.10 gi|452206174|ref|YP_007486296.1| - 0.037 14.0 0.0 0.078 12.9 0.0 1.6 1 0 0 1 1 1 0 TFIIE beta subunit core domain HTH_12 PF08461.5 gi|452206174|ref|YP_007486296.1| - 0.046 13.4 0.0 0.12 12.1 0.0 1.7 2 0 0 2 2 1 0 Ribonuclease R winged-helix domain Sigma70_r4_2 PF08281.7 gi|452206174|ref|YP_007486296.1| - 0.072 12.5 0.1 0.45 10.0 0.0 2.1 1 1 0 1 1 1 0 Sigma-70, region 4 Sigma70_r4 PF04545.11 gi|452206174|ref|YP_007486296.1| - 0.072 12.4 0.2 0.11 11.7 0.1 1.3 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_AsnC-type PF13404.1 gi|452206174|ref|YP_007486296.1| - 0.092 12.3 0.4 0.14 11.7 0.3 1.3 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain DUF3175 PF11373.3 gi|452206174|ref|YP_007486296.1| - 0.14 12.2 0.0 11 6.0 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3175) Pyr_redox_2 PF07992.9 gi|452206175|ref|YP_007486297.1| - 3.6e-14 53.1 4.3 3e-13 50.0 0.1 2.4 2 1 1 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|452206175|ref|YP_007486297.1| - 2.5e-11 43.0 0.8 5.5e-05 22.2 0.1 2.1 1 1 1 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|452206175|ref|YP_007486297.1| - 2.5e-08 33.2 1.2 1.6e-07 30.5 0.1 2.3 1 1 1 2 2 2 1 FAD binding domain FAD_binding_3 PF01494.14 gi|452206175|ref|YP_007486297.1| - 1.1e-07 31.1 0.3 1.5e-06 27.5 0.0 2.0 2 0 0 2 2 2 1 FAD binding domain Pyr_redox_3 PF13738.1 gi|452206175|ref|YP_007486297.1| - 3.5e-07 30.4 0.3 0.0094 16.0 0.0 2.1 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|452206175|ref|YP_007486297.1| - 4.1e-07 28.8 0.0 7.5e-05 21.3 0.0 2.1 2 0 0 2 2 2 2 HI0933-like protein FAD_oxidored PF12831.2 gi|452206175|ref|YP_007486297.1| - 1.3e-05 24.4 1.9 1.5e-05 24.2 0.0 1.9 2 0 0 2 2 2 1 FAD dependent oxidoreductase GIDA PF01134.17 gi|452206175|ref|YP_007486297.1| - 1.9e-05 23.7 2.8 0.00021 20.3 0.1 2.3 1 1 1 2 2 2 1 Glucose inhibited division protein A NAD_binding_9 PF13454.1 gi|452206175|ref|YP_007486297.1| - 4.7e-05 23.2 1.5 0.0059 16.3 0.1 2.6 3 0 0 3 3 3 1 FAD-NAD(P)-binding Lycopene_cycl PF05834.7 gi|452206175|ref|YP_007486297.1| - 7.1e-05 21.8 0.6 0.0072 15.2 0.0 2.1 1 1 1 2 2 2 2 Lycopene cyclase protein Thi4 PF01946.12 gi|452206175|ref|YP_007486297.1| - 0.00021 20.4 0.0 0.00042 19.4 0.0 1.5 1 0 0 1 1 1 1 Thi4 family NAD_binding_8 PF13450.1 gi|452206175|ref|YP_007486297.1| - 0.00052 19.9 0.0 0.0016 18.4 0.0 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain AlaDh_PNT_C PF01262.16 gi|452206175|ref|YP_007486297.1| - 0.028 13.9 0.8 0.36 10.3 0.0 2.5 1 1 2 3 3 3 0 Alanine dehydrogenase/PNT, C-terminal domain XRCC1_N PF01834.11 gi|452206175|ref|YP_007486297.1| - 0.052 13.0 0.2 1.5 8.2 0.0 2.2 2 0 0 2 2 2 0 XRCC1 N terminal domain Pyr_redox PF00070.22 gi|452206175|ref|YP_007486297.1| - 0.097 13.0 0.0 0.21 11.9 0.0 1.6 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.9 gi|452206175|ref|YP_007486297.1| - 0.098 11.2 4.2 2.4 6.6 0.3 2.1 1 1 0 2 2 2 0 Tryptophan halogenase 4HBT PF03061.17 gi|452206176|ref|YP_007486298.1| - 2.4e-16 59.6 0.2 3.1e-16 59.2 0.2 1.2 1 0 0 1 1 1 1 Thioesterase superfamily TatC PF00902.13 gi|452206177|ref|YP_007486299.1| - 1e-68 231.0 31.5 1.3e-40 139.0 6.9 2.4 2 0 0 2 2 2 2 Sec-independent protein translocase protein (TatC) DUF2890 PF11081.3 gi|452206177|ref|YP_007486299.1| - 0.84 9.6 1.5 1.3 9.0 1.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2890) TatC PF00902.13 gi|452206178|ref|YP_007486300.1| - 1.6e-40 138.7 19.3 1.9e-40 138.5 13.4 1.0 1 0 0 1 1 1 1 Sec-independent protein translocase protein (TatC) CAAD PF14159.1 gi|452206178|ref|YP_007486300.1| - 6.1 6.5 8.1 0.82 9.3 1.8 2.4 2 1 0 2 2 2 0 CAAD domains of cyanobacterial aminoacyl-tRNA synthetase Methyltransf_18 PF12847.2 gi|452206179|ref|YP_007486301.1| - 4.4e-06 27.2 0.1 8e-06 26.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|452206179|ref|YP_007486301.1| - 0.0013 18.7 1.3 0.0036 17.3 0.9 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|452206179|ref|YP_007486301.1| - 0.0062 16.2 0.0 0.011 15.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|452206179|ref|YP_007486301.1| - 0.018 15.5 0.0 0.035 14.5 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_25 PF13649.1 gi|452206179|ref|YP_007486301.1| - 0.048 14.0 0.0 0.11 12.9 0.0 1.6 1 1 0 1 1 1 0 Methyltransferase domain Glycos_transf_1 PF00534.15 gi|452206180|ref|YP_007486302.1| - 7.2e-36 123.1 0.0 9.9e-36 122.7 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|452206180|ref|YP_007486302.1| - 1.4e-17 64.0 0.1 3e-17 63.0 0.1 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|452206180|ref|YP_007486302.1| - 2.3e-13 50.2 0.4 5.3e-13 49.0 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|452206180|ref|YP_007486302.1| - 4.4e-09 36.6 7.9 4.4e-09 36.6 5.5 3.0 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|452206180|ref|YP_007486302.1| - 1.7e-05 24.6 0.0 2.8e-05 23.8 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 PA-IL PF07828.7 gi|452206180|ref|YP_007486302.1| - 0.14 11.9 0.0 19 5.0 0.0 2.8 3 0 0 3 3 3 0 PA-IL-like protein PTPS PF01242.14 gi|452206181|ref|YP_007486303.1| - 5.6e-23 80.9 0.0 6.2e-23 80.8 0.0 1.0 1 0 0 1 1 1 1 6-pyruvoyl tetrahydropterin synthase ADH_zinc_N PF00107.21 gi|452206182|ref|YP_007486304.1| - 7.4e-13 48.1 0.0 1.5e-12 47.1 0.0 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N_assoc PF13823.1 gi|452206182|ref|YP_007486304.1| - 0.11 12.1 0.0 1 9.0 0.0 2.4 2 0 0 2 2 2 0 Alcohol dehydrogenase GroES-associated Sulfatase PF00884.18 gi|452206183|ref|YP_007486305.1| - 1.8e-05 24.1 0.0 2.3e-05 23.7 0.0 1.1 1 0 0 1 1 1 1 Sulfatase Metalloenzyme PF01676.13 gi|452206183|ref|YP_007486305.1| - 0.022 14.1 0.0 0.069 12.5 0.0 1.7 2 0 0 2 2 2 0 Metalloenzyme superfamily Aldo_ket_red PF00248.16 gi|452206184|ref|YP_007486306.1| - 3.6e-40 137.5 0.0 5.4e-40 136.9 0.0 1.3 1 0 0 1 1 1 1 Aldo/keto reductase family GFO_IDH_MocA PF01408.17 gi|452206184|ref|YP_007486306.1| - 1.8e-15 57.4 0.0 1.3e-14 54.6 0.0 2.3 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold NAD_binding_3 PF03447.11 gi|452206184|ref|YP_007486306.1| - 0.00034 20.9 1.0 0.001 19.4 0.7 1.8 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain GFO_IDH_MocA_C PF02894.12 gi|452206184|ref|YP_007486306.1| - 0.0036 17.0 0.0 0.0078 16.0 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain DUF1212 PF06738.7 gi|452206185|ref|YP_007486307.1| - 0.11 11.9 1.8 0.13 11.6 1.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1212) DUF4131 PF13567.1 gi|452206185|ref|YP_007486307.1| - 3.6 6.9 6.9 7.4 5.9 4.8 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4131) DUF4282 PF14110.1 gi|452206185|ref|YP_007486307.1| - 4.3 7.5 12.7 1.1 9.4 3.7 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4282) CDP-OH_P_transf PF01066.16 gi|452206186|ref|YP_007486308.1| - 4e-12 46.3 4.6 9e-12 45.1 3.1 1.7 1 1 0 1 1 1 1 CDP-alcohol phosphatidyltransferase DUF457 PF04307.9 gi|452206187|ref|YP_007486309.1| - 7.8e-07 28.5 12.8 1.2e-06 27.9 8.9 1.2 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) Zn_dep_PLPC PF00882.13 gi|452206187|ref|YP_007486309.1| - 0.027 14.1 0.4 0.049 13.2 0.2 1.3 1 1 0 1 1 1 0 Zinc dependent phospholipase C SAICAR_synt PF01259.13 gi|452206188|ref|YP_007486310.1| - 5.2e-14 51.9 0.0 9.5e-14 51.0 0.0 1.3 1 1 0 1 1 1 1 SAICAR synthetase DUF4110 PF13422.1 gi|452206188|ref|YP_007486310.1| - 0.032 14.0 0.1 0.064 13.1 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4110) PHP PF02811.14 gi|452206190|ref|YP_007486312.1| - 6.5e-10 39.0 0.0 6.8e-10 39.0 0.0 1.2 1 0 0 1 1 1 1 PHP domain PHP_C PF13263.1 gi|452206190|ref|YP_007486312.1| - 0.0014 18.1 0.1 0.0039 16.6 0.1 1.7 1 0 0 1 1 1 1 PHP-associated HTH_27 PF13463.1 gi|452206191|ref|YP_007486313.1| - 0.15 12.4 0.0 0.18 12.1 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain adh_short PF00106.20 gi|452206192|ref|YP_007486314.1| - 1.4e-41 142.2 1.2 1.7e-41 141.9 0.8 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|452206192|ref|YP_007486314.1| - 8.5e-23 80.9 0.2 1.2e-22 80.5 0.2 1.1 1 0 0 1 1 1 1 KR domain adh_short_C2 PF13561.1 gi|452206192|ref|YP_007486314.1| - 2.5e-22 79.8 0.0 3e-22 79.5 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase Epimerase PF01370.16 gi|452206192|ref|YP_007486314.1| - 7.9e-05 22.1 0.2 0.0001 21.8 0.1 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Eno-Rase_NADH_b PF12242.3 gi|452206192|ref|YP_007486314.1| - 0.0082 15.9 0.1 0.026 14.2 0.1 1.8 1 0 0 1 1 1 1 NAD(P)H binding domain of trans-2-enoyl-CoA reductase NAD_binding_10 PF13460.1 gi|452206192|ref|YP_007486314.1| - 0.058 13.4 3.1 0.11 12.5 2.1 1.6 1 1 0 1 1 1 0 NADH(P)-binding 3HCDH_N PF02737.13 gi|452206192|ref|YP_007486314.1| - 0.065 12.8 0.1 0.21 11.2 0.2 1.6 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DFP PF04127.10 gi|452206192|ref|YP_007486314.1| - 0.28 10.7 2.1 1.4 8.4 1.5 2.0 1 1 0 1 1 1 0 DNA / pantothenate metabolism flavoprotein HATPase_c PF02518.21 gi|452206193|ref|YP_007486315.1| - 9.8e-19 67.1 0.0 1.9e-18 66.1 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|452206193|ref|YP_007486315.1| - 1.1e-09 38.1 1.9 1.9e-09 37.3 0.6 2.0 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain GAF_3 PF13492.1 gi|452206193|ref|YP_007486315.1| - 6.2e-07 29.5 0.0 2.1e-06 27.8 0.0 2.0 2 0 0 2 2 2 1 GAF domain HATPase_c_2 PF13581.1 gi|452206193|ref|YP_007486315.1| - 0.00025 20.8 0.7 0.00025 20.8 0.5 2.1 2 1 0 2 2 2 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.1 gi|452206193|ref|YP_007486315.1| - 0.0013 18.4 0.0 0.002 17.7 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPOB_a PF14689.1 gi|452206193|ref|YP_007486315.1| - 0.16 11.5 0.0 0.29 10.7 0.0 1.4 1 0 0 1 1 1 0 Sensor_kinase_SpoOB-type, alpha-helical domain HATPase_c_5 PF14501.1 gi|452206193|ref|YP_007486315.1| - 0.17 11.5 0.0 0.27 10.9 0.0 1.3 1 0 0 1 1 1 0 GHKL domain PilZ PF07238.9 gi|452206194|ref|YP_007486316.1| - 0.069 13.1 0.1 0.32 11.0 0.0 1.8 1 1 1 2 2 2 0 PilZ domain NosD PF05048.8 gi|452206195|ref|YP_007486317.1| - 3.4e-27 95.1 3.0 7.2e-25 87.5 2.2 2.1 1 1 1 2 2 2 2 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.1 gi|452206195|ref|YP_007486317.1| - 6.9e-19 68.1 10.5 3.1e-14 53.0 5.1 3.2 1 1 2 3 3 3 3 Right handed beta helix region NosL PF05573.7 gi|452206195|ref|YP_007486317.1| - 6.1e-12 45.4 0.0 1.2e-11 44.5 0.0 1.4 1 0 0 1 1 1 1 NosL Pectate_lyase_3 PF12708.2 gi|452206195|ref|YP_007486317.1| - 1.1e-09 38.8 0.5 1.1e-09 38.8 0.4 1.9 1 1 1 2 2 2 1 Pectate lyase superfamily protein FKBP_C PF00254.23 gi|452206196|ref|YP_007486318.1| - 8.9e-08 32.0 0.2 1.6e-07 31.2 0.1 1.5 1 0 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase ScdA_N PF04405.9 gi|452206196|ref|YP_007486318.1| - 0.054 12.8 0.3 0.11 11.8 0.2 1.5 1 0 0 1 1 1 0 Domain of Unknown function (DUF542) CYTH PF01928.16 gi|452206197|ref|YP_007486319.1| - 4.2e-42 143.9 2.2 4.7e-42 143.7 1.5 1.0 1 0 0 1 1 1 1 CYTH domain AdoMet_Synthase PF01941.14 gi|452206198|ref|YP_007486320.1| - 1.7e-175 583.2 6.0 1.9e-175 583.1 4.2 1.0 1 0 0 1 1 1 1 S-adenosylmethionine synthetase (AdoMet synthetase) T2SE PF00437.15 gi|452206201|ref|YP_007486323.1| - 5.1e-48 163.3 0.0 9.7e-48 162.4 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.1 gi|452206201|ref|YP_007486323.1| - 0.011 15.2 0.0 0.026 14.0 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain ABC_tran PF00005.22 gi|452206201|ref|YP_007486323.1| - 0.023 14.9 0.0 0.048 13.9 0.0 1.6 1 0 0 1 1 1 0 ABC transporter FtsK_SpoIIIE PF01580.13 gi|452206201|ref|YP_007486323.1| - 0.044 13.2 0.2 0.24 10.8 0.0 2.1 2 0 0 2 2 2 0 FtsK/SpoIIIE family DUF3104 PF11302.3 gi|452206201|ref|YP_007486323.1| - 0.19 11.1 0.0 0.37 10.1 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3104) T2SF PF00482.18 gi|452206202|ref|YP_007486324.1| - 8.9e-31 106.3 1.8 2.1e-18 66.4 0.2 2.9 2 0 0 2 2 2 2 Type II secretion system (T2SS), protein F Methyltransf_11 PF08241.7 gi|452206203|ref|YP_007486325.1| - 4.3e-18 65.5 0.1 6.1e-18 65.0 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|452206203|ref|YP_007486325.1| - 3.7e-10 40.3 0.3 6.8e-10 39.5 0.2 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|452206203|ref|YP_007486325.1| - 4e-10 39.9 0.1 5.9e-10 39.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|452206203|ref|YP_007486325.1| - 1.5e-08 34.9 0.1 2.5e-08 34.3 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|452206203|ref|YP_007486325.1| - 7.7e-08 32.0 0.0 1.1e-07 31.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|452206203|ref|YP_007486325.1| - 7.1e-07 29.0 0.0 8.6e-07 28.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|452206203|ref|YP_007486325.1| - 1e-05 24.8 0.0 1.4e-05 24.3 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_26 PF13659.1 gi|452206203|ref|YP_007486325.1| - 1.1e-05 25.4 3.0 1.8e-05 24.7 2.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain NodS PF05401.6 gi|452206203|ref|YP_007486325.1| - 0.001 18.5 0.0 0.0012 18.2 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_8 PF05148.10 gi|452206203|ref|YP_007486325.1| - 0.0014 18.2 0.0 0.0021 17.6 0.0 1.2 1 0 0 1 1 1 1 Hypothetical methyltransferase Methyltransf_9 PF08003.6 gi|452206203|ref|YP_007486325.1| - 0.003 16.3 0.0 0.0042 15.8 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) Methyltransf_4 PF02390.12 gi|452206203|ref|YP_007486325.1| - 0.056 12.4 0.0 0.73 8.8 0.0 2.0 2 0 0 2 2 2 0 Putative methyltransferase PCMT PF01135.14 gi|452206203|ref|YP_007486325.1| - 0.063 12.8 0.1 0.11 12.0 0.0 1.4 1 1 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_32 PF13679.1 gi|452206203|ref|YP_007486325.1| - 0.15 11.7 0.0 0.22 11.1 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain MetW PF07021.7 gi|452206203|ref|YP_007486325.1| - 0.15 11.4 0.0 0.19 11.0 0.0 1.2 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW HR_lesion PF05514.6 gi|452206204|ref|YP_007486326.1| - 3.9e-06 26.7 0.1 0.00012 21.9 0.0 2.1 1 1 1 2 2 2 2 HR-like lesion-inducing DoxX PF07681.7 gi|452206204|ref|YP_007486326.1| - 0.0005 20.4 3.8 0.0005 20.4 2.6 1.5 2 0 0 2 2 2 1 DoxX DUF1405 PF07187.6 gi|452206205|ref|YP_007486327.1| - 1.4e-44 151.7 13.0 1.7e-44 151.4 9.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1405) RseC_MucC PF04246.7 gi|452206205|ref|YP_007486327.1| - 5.1 6.6 6.8 2 8.0 0.4 2.5 3 0 0 3 3 3 0 Positive regulator of sigma(E), RseC/MucC SOR_SNZ PF01680.12 gi|452206206|ref|YP_007486328.1| - 1.1e-94 315.9 6.4 1.6e-94 315.3 4.4 1.2 1 0 0 1 1 1 1 SOR/SNZ family ThiG PF05690.9 gi|452206206|ref|YP_007486328.1| - 1.1e-11 44.2 4.2 1.7e-07 30.5 0.4 2.3 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG OMPdecase PF00215.19 gi|452206206|ref|YP_007486328.1| - 0.0027 17.1 0.6 2 7.7 0.0 2.7 2 1 1 3 3 3 2 Orotidine 5'-phosphate decarboxylase / HUMPS family NMO PF03060.10 gi|452206206|ref|YP_007486328.1| - 0.012 14.7 0.1 0.012 14.7 0.1 1.8 3 0 0 3 3 3 0 Nitronate monooxygenase NanE PF04131.9 gi|452206206|ref|YP_007486328.1| - 0.016 14.1 0.4 0.35 9.8 0.0 2.5 2 1 0 2 2 2 0 Putative N-acetylmannosamine-6-phosphate epimerase IGPS PF00218.16 gi|452206206|ref|YP_007486328.1| - 0.029 13.4 0.2 0.14 11.1 0.0 2.1 3 0 0 3 3 3 0 Indole-3-glycerol phosphate synthase DUF373 PF04123.8 gi|452206207|ref|YP_007486329.1| - 1.5e-112 376.0 10.3 1.7e-112 375.8 7.2 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF373) DUF3096 PF11295.3 gi|452206207|ref|YP_007486329.1| - 1.3 8.6 17.7 0.65 9.5 0.3 3.6 3 0 0 3 3 3 0 Protein of unknown function (DUF3096) DUF650 PF04894.7 gi|452206208|ref|YP_007486330.1| - 3.3e-97 325.2 0.0 4.1e-97 324.9 0.0 1.1 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF650) DUF651 PF04895.7 gi|452206208|ref|YP_007486330.1| - 6.9e-34 115.7 0.1 1.2e-33 115.0 0.1 1.4 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF651) RVT_3 PF13456.1 gi|452206209|ref|YP_007486331.1| - 2.8e-22 78.2 0.0 3.7e-22 77.9 0.0 1.1 1 0 0 1 1 1 1 Reverse transcriptase-like RNase_H PF00075.19 gi|452206209|ref|YP_007486331.1| - 1.5e-14 54.4 0.0 2.1e-14 53.9 0.0 1.2 1 0 0 1 1 1 1 RNase H Homeobox PF00046.24 gi|452206210|ref|YP_007486332.1| - 0.05 13.2 0.0 0.11 12.1 0.0 1.6 1 0 0 1 1 1 0 Homeobox domain Pyrophosphatase PF00719.14 gi|452206211|ref|YP_007486333.1| - 2.1e-55 186.4 1.4 2.4e-55 186.2 1.0 1.0 1 0 0 1 1 1 1 Inorganic pyrophosphatase T2SF PF00482.18 gi|452206212|ref|YP_007486334.1| - 2.5e-15 56.4 3.0 9.6e-07 28.7 0.6 2.5 2 0 0 2 2 2 2 Type II secretion system (T2SS), protein F T2SE PF00437.15 gi|452206213|ref|YP_007486335.1| - 1.1e-22 80.2 0.0 1.6e-22 79.6 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_30 PF13604.1 gi|452206213|ref|YP_007486335.1| - 0.013 15.1 0.0 0.026 14.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|452206213|ref|YP_007486335.1| - 0.016 14.7 0.0 0.03 13.8 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|452206213|ref|YP_007486335.1| - 0.05 13.5 0.0 0.19 11.7 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain AAA_19 PF13245.1 gi|452206213|ref|YP_007486335.1| - 0.064 13.0 0.7 0.31 10.8 0.0 2.6 3 0 0 3 3 3 0 Part of AAA domain AAA_23 PF13476.1 gi|452206213|ref|YP_007486335.1| - 0.076 13.3 0.0 0.13 12.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain DUF594 PF04578.8 gi|452206213|ref|YP_007486335.1| - 0.2 11.1 0.2 0.36 10.3 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF594 DUF258 PF03193.11 gi|452206213|ref|YP_007486335.1| - 0.21 10.7 0.0 0.37 9.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 Amidase PF01425.16 gi|452206214|ref|YP_007486336.1| - 6.4e-96 321.8 4.8 7.5e-96 321.6 3.3 1.0 1 0 0 1 1 1 1 Amidase Usp PF00582.21 gi|452206215|ref|YP_007486337.1| - 1.6e-30 106.1 1.4 1.8e-30 105.9 0.9 1.0 1 0 0 1 1 1 1 Universal stress protein family GDE_N_bis PF14742.1 gi|452206215|ref|YP_007486337.1| - 0.072 12.4 0.1 0.078 12.3 0.1 1.1 1 0 0 1 1 1 0 N-terminal domain of (some) glycogen debranching enzymes Usp PF00582.21 gi|452206216|ref|YP_007486338.1| - 6.9e-31 107.3 2.1 7.8e-31 107.1 1.4 1.0 1 0 0 1 1 1 1 Universal stress protein family Glyco_hydro_97 PF10566.4 gi|452206216|ref|YP_007486338.1| - 0.016 14.2 0.1 3.7 6.5 0.0 2.0 1 1 1 2 2 2 0 Glycoside hydrolase 97 CobU PF02283.11 gi|452206216|ref|YP_007486338.1| - 0.02 14.3 0.1 0.09 12.1 0.0 1.8 1 1 0 2 2 2 0 Cobinamide kinase / cobinamide phosphate guanyltransferase AP_endonuc_2 PF01261.19 gi|452206216|ref|YP_007486338.1| - 0.021 14.0 0.2 0.045 13.0 0.1 1.5 1 1 1 2 2 2 0 Xylose isomerase-like TIM barrel Dodecin PF07311.7 gi|452206216|ref|YP_007486338.1| - 0.043 13.8 0.1 0.9 9.6 0.0 2.2 2 0 0 2 2 2 0 Dodecin Prok-JAB PF14464.1 gi|452206217|ref|YP_007486339.1| - 1.2e-19 69.7 0.2 1.5e-19 69.5 0.1 1.1 1 0 0 1 1 1 1 Prokaryotic homologs of the JAB domain JAB PF01398.16 gi|452206217|ref|YP_007486339.1| - 3.2e-10 39.7 0.0 4.2e-10 39.3 0.0 1.1 1 0 0 1 1 1 1 JAB1/Mov34/MPN/PAD-1 ubiquitin protease DUF2795 PF11387.3 gi|452206217|ref|YP_007486339.1| - 0.14 12.0 0.1 1.1 9.2 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2795) Peripla_BP_2 PF01497.13 gi|452206218|ref|YP_007486340.1| - 5.9e-38 130.3 0.1 7.3e-38 130.0 0.1 1.1 1 0 0 1 1 1 1 Periplasmic binding protein tRNA-synt_1d PF00750.14 gi|452206219|ref|YP_007486341.1| - 4e-59 200.2 0.1 6.8e-59 199.4 0.0 1.3 2 0 0 2 2 2 1 tRNA synthetases class I (R) DALR_1 PF05746.10 gi|452206219|ref|YP_007486341.1| - 3.7e-32 110.7 0.0 1.3e-31 109.0 0.0 2.0 2 0 0 2 2 2 1 DALR anticodon binding domain Arg_tRNA_synt_N PF03485.11 gi|452206219|ref|YP_007486341.1| - 1.6e-11 44.5 0.0 5.5e-11 42.8 0.0 1.9 1 0 0 1 1 1 1 Arginyl tRNA synthetase N terminal domain tRNA-synt_1f PF01921.13 gi|452206219|ref|YP_007486341.1| - 0.0093 14.6 0.0 0.25 9.9 0.0 2.2 2 0 0 2 2 2 1 tRNA synthetases class I (K) tRNA-synt_1e PF01406.14 gi|452206219|ref|YP_007486341.1| - 0.028 13.5 0.0 0.057 12.5 0.0 1.5 1 1 0 1 1 1 0 tRNA synthetases class I (C) catalytic domain NA37 PF04245.8 gi|452206219|ref|YP_007486341.1| - 0.065 12.5 0.5 0.34 10.2 0.1 2.2 2 1 0 2 2 2 0 37-kD nucleoid-associated bacterial protein 3HCDH_N PF02737.13 gi|452206219|ref|YP_007486341.1| - 0.069 12.7 0.2 0.58 9.7 0.0 2.4 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Radical_SAM PF04055.16 gi|452206220|ref|YP_007486342.1| - 1.3e-19 70.9 0.1 2.9e-19 69.8 0.1 1.6 1 1 0 1 1 1 1 Radical SAM superfamily Wyosine_form PF08608.7 gi|452206220|ref|YP_007486342.1| - 3.9e-19 68.5 0.0 8.8e-19 67.3 0.0 1.6 1 0 0 1 1 1 1 Wyosine base formation HAD_2 PF13419.1 gi|452206220|ref|YP_007486342.1| - 9.9e-05 22.6 0.2 0.00073 19.8 0.0 2.3 2 1 1 3 3 3 1 Haloacid dehalogenase-like hydrolase Fer4_14 PF13394.1 gi|452206220|ref|YP_007486342.1| - 0.0029 17.6 0.1 0.011 15.7 0.1 1.9 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|452206220|ref|YP_007486342.1| - 0.011 15.8 0.0 0.019 15.0 0.0 1.4 1 0 0 1 1 1 0 4Fe-4S single cluster domain Hydrolase_6 PF13344.1 gi|452206220|ref|YP_007486342.1| - 0.061 13.2 0.0 0.19 11.6 0.0 1.7 1 1 1 2 2 2 0 Haloacid dehalogenase-like hydrolase CTP-dep_RFKase PF01982.11 gi|452206221|ref|YP_007486343.1| - 5.2e-45 151.9 0.0 7.2e-45 151.5 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF120 HTH_20 PF12840.2 gi|452206221|ref|YP_007486343.1| - 1.2e-07 31.4 0.4 2.1e-07 30.6 0.3 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.1 gi|452206221|ref|YP_007486343.1| - 1.6e-05 25.1 0.7 3e-05 24.2 0.5 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_34 PF13601.1 gi|452206221|ref|YP_007486343.1| - 3.9e-05 23.5 0.0 0.00023 21.1 0.0 2.0 2 0 0 2 2 2 1 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|452206221|ref|YP_007486343.1| - 4.5e-05 23.0 0.4 8.4e-05 22.1 0.3 1.4 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|452206221|ref|YP_007486343.1| - 7.5e-05 22.0 0.0 0.00013 21.3 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.7 gi|452206221|ref|YP_007486343.1| - 0.00018 21.0 0.2 0.00034 20.1 0.1 1.4 1 0 0 1 1 1 1 HTH domain MarR PF01047.17 gi|452206221|ref|YP_007486343.1| - 0.00018 21.1 0.1 0.00033 20.2 0.1 1.4 1 0 0 1 1 1 1 MarR family Fe_dep_repress PF01325.14 gi|452206221|ref|YP_007486343.1| - 0.00063 19.6 0.0 0.0013 18.6 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_AsnC-type PF13404.1 gi|452206221|ref|YP_007486343.1| - 0.0017 17.8 1.2 0.004 16.6 0.8 1.7 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_DeoR PF08220.7 gi|452206221|ref|YP_007486343.1| - 0.0049 16.3 0.1 0.0093 15.4 0.1 1.4 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain Replic_Relax PF13814.1 gi|452206221|ref|YP_007486343.1| - 0.02 14.7 0.1 0.029 14.2 0.1 1.2 1 0 0 1 1 1 0 Replication-relaxation HTH_1 PF00126.22 gi|452206221|ref|YP_007486343.1| - 0.039 13.6 0.7 0.12 12.0 0.5 1.8 1 1 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family Antitoxin-MazE PF04014.13 gi|452206221|ref|YP_007486343.1| - 0.13 12.0 0.2 0.35 10.6 0.1 1.8 2 0 0 2 2 2 0 Antidote-toxin recognition MazE PSK_trans_fac PF07704.6 gi|452206221|ref|YP_007486343.1| - 2 9.1 6.0 5.2 7.8 0.7 2.7 2 1 1 3 3 3 0 Rv0623-like transcription factor DHBP_synthase PF00926.14 gi|452206222|ref|YP_007486344.1| - 7.4e-60 201.5 0.0 8.9e-60 201.2 0.0 1.1 1 0 0 1 1 1 1 3,4-dihydroxy-2-butanone 4-phosphate synthase tRNA_anti-codon PF01336.20 gi|452206223|ref|YP_007486345.1| - 3.3e-30 103.7 3.8 3.4e-12 46.0 0.0 3.5 3 0 0 3 3 3 3 OB-fold nucleic acid binding domain Rep_fac-A_C PF08646.5 gi|452206223|ref|YP_007486345.1| - 0.0076 15.9 0.0 26 4.5 0.0 3.2 3 0 0 3 3 3 3 Replication factor-A C terminal domain CBFD_NFYB_HMF PF00808.18 gi|452206224|ref|YP_007486346.1| - 1.8e-25 88.7 0.8 2e-12 46.9 0.0 2.0 2 0 0 2 2 2 2 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Histone PF00125.19 gi|452206224|ref|YP_007486346.1| - 1.4e-13 50.7 1.9 6.5e-07 29.3 0.1 2.0 2 0 0 2 2 2 2 Core histone H2A/H2B/H3/H4 TAF PF02969.12 gi|452206224|ref|YP_007486346.1| - 0.00087 19.1 1.2 0.048 13.6 0.0 2.2 2 0 0 2 2 2 1 TATA box binding protein associated factor (TAF) CENP-S PF15630.1 gi|452206224|ref|YP_007486346.1| - 0.0045 17.1 0.1 0.0097 16.0 0.1 1.6 1 0 0 1 1 1 1 Kinetochore component CENP-S DUF1931 PF09123.6 gi|452206224|ref|YP_007486346.1| - 0.037 13.9 1.0 0.11 12.4 0.1 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF1931) Hist_deacetyl PF00850.14 gi|452206225|ref|YP_007486347.1| - 2.2e-83 280.1 0.1 2.6e-83 279.9 0.0 1.0 1 0 0 1 1 1 1 Histone deacetylase domain tRNA_NucTransf2 PF09249.6 gi|452206226|ref|YP_007486348.1| - 6.9e-37 125.8 0.0 1e-36 125.2 0.0 1.3 1 0 0 1 1 1 1 tRNA nucleotidyltransferase, second domain NTP_transf_2 PF01909.18 gi|452206226|ref|YP_007486348.1| - 2.9e-10 40.3 0.0 5.4e-10 39.4 0.0 1.4 1 0 0 1 1 1 1 Nucleotidyltransferase domain PAS_4 PF08448.5 gi|452206226|ref|YP_007486348.1| - 0.034 14.1 0.3 0.093 12.7 0.2 1.7 1 0 0 1 1 1 0 PAS fold Peptidase_M10 PF00413.19 gi|452206227|ref|YP_007486349.1| - 2.8e-05 23.8 0.2 6e-05 22.8 0.2 1.7 1 1 0 1 1 1 1 Matrixin Reprolysin_5 PF13688.1 gi|452206227|ref|YP_007486349.1| - 0.0092 15.9 0.2 0.017 15.0 0.1 1.4 1 0 0 1 1 1 1 Metallo-peptidase family M12 Reprolysin_3 PF13582.1 gi|452206227|ref|YP_007486349.1| - 0.011 16.2 0.1 0.018 15.5 0.1 1.5 1 0 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like Reprolysin_2 PF13574.1 gi|452206227|ref|YP_007486349.1| - 0.029 14.4 0.1 0.045 13.7 0.0 1.4 1 0 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like Peptidase_M66 PF10462.4 gi|452206227|ref|YP_007486349.1| - 0.11 11.3 0.2 0.16 10.8 0.2 1.2 1 0 0 1 1 1 0 Peptidase M66 Metallopep PF12044.3 gi|452206227|ref|YP_007486349.1| - 0.12 10.7 0.5 0.17 10.3 0.4 1.1 1 0 0 1 1 1 0 Putative peptidase family Peptidase_M57 PF12388.3 gi|452206227|ref|YP_007486349.1| - 0.13 11.5 0.0 0.3 10.3 0.0 1.5 1 0 0 1 1 1 0 Dual-action HEIGH metallo-peptidase CBS PF00571.23 gi|452206228|ref|YP_007486350.1| - 1.1e-35 121.1 12.6 1.8e-12 46.8 0.4 4.1 4 0 0 4 4 4 4 CBS domain tRNA-synt_2b PF00587.20 gi|452206229|ref|YP_007486351.1| - 7.9e-54 181.8 0.0 1e-53 181.4 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|452206229|ref|YP_007486351.1| - 1.1e-21 76.5 0.0 1.9e-21 75.7 0.0 1.4 1 0 0 1 1 1 1 Anticodon binding domain zf-ribbon_3 PF13248.1 gi|452206229|ref|YP_007486351.1| - 0.043 13.0 0.2 0.2 10.9 0.1 2.1 1 1 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|452206229|ref|YP_007486351.1| - 0.2 11.2 0.3 7.9 6.1 0.0 3.0 3 0 0 3 3 3 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|452206229|ref|YP_007486351.1| - 0.21 11.3 0.3 9 6.0 0.0 3.0 3 0 0 3 3 3 0 zinc-ribbon domain Prok-RING_1 PF14446.1 gi|452206229|ref|YP_007486351.1| - 5.6 6.7 6.7 4.6 7.0 0.2 2.7 3 0 0 3 3 3 0 Prokaryotic RING finger family 1 ERCC4 PF02732.10 gi|452206230|ref|YP_007486352.1| - 3.4e-24 85.2 0.1 9.5e-24 83.7 0.0 1.8 2 0 0 2 2 2 1 ERCC4 domain Helicase_C PF00271.26 gi|452206230|ref|YP_007486352.1| - 5.2e-18 64.6 0.0 1.1e-17 63.6 0.0 1.5 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DEAD PF00270.24 gi|452206230|ref|YP_007486352.1| - 4e-15 55.7 0.0 9.3e-15 54.5 0.0 1.6 1 0 0 1 1 1 1 DEAD/DEAH box helicase HHH_2 PF12826.2 gi|452206230|ref|YP_007486352.1| - 4.4e-12 45.6 0.1 1.6e-11 43.9 0.1 1.9 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|452206230|ref|YP_007486352.1| - 1.1e-09 38.2 2.7 1.8e-09 37.6 0.1 2.6 3 0 0 3 3 3 1 Helix-hairpin-helix domain ResIII PF04851.10 gi|452206230|ref|YP_007486352.1| - 1.8e-08 34.4 0.0 3.7e-08 33.4 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit HHH PF00633.18 gi|452206230|ref|YP_007486352.1| - 8.4e-08 31.5 1.6 1.4e-05 24.5 0.1 2.9 2 0 0 2 2 2 1 Helix-hairpin-helix motif 5_3_exonuc PF01367.15 gi|452206230|ref|YP_007486352.1| - 0.02 15.1 0.0 0.077 13.2 0.0 2.0 1 0 0 1 1 1 0 5'-3' exonuclease, C-terminal SAM fold Helicase_C_2 PF13307.1 gi|452206230|ref|YP_007486352.1| - 0.071 13.0 0.0 0.17 11.8 0.0 1.6 1 0 0 1 1 1 0 Helicase C-terminal domain Auto_anti-p27 PF06677.7 gi|452206231|ref|YP_007486353.1| - 5.4e-17 61.2 0.2 8.3e-17 60.6 0.1 1.2 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DZR PF12773.2 gi|452206231|ref|YP_007486353.1| - 0.0027 17.4 1.2 0.005 16.6 0.8 1.4 1 0 0 1 1 1 1 Double zinc ribbon zinc-ribbons_6 PF07191.7 gi|452206231|ref|YP_007486353.1| - 0.0081 15.9 0.2 0.013 15.2 0.2 1.3 1 0 0 1 1 1 1 zinc-ribbons DNA_ligase_ZBD PF03119.11 gi|452206231|ref|YP_007486353.1| - 0.015 14.9 1.4 0.14 11.8 0.1 2.5 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain GFA PF04828.9 gi|452206231|ref|YP_007486353.1| - 0.024 14.5 1.4 0.44 10.5 0.0 2.2 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme zf-ribbon_3 PF13248.1 gi|452206231|ref|YP_007486353.1| - 0.051 12.7 3.2 0.093 11.9 2.2 1.4 1 0 0 1 1 1 0 zinc-ribbon domain UPF0547 PF10571.4 gi|452206231|ref|YP_007486353.1| - 0.16 11.7 1.7 5.9 6.6 0.3 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-C3HC4_3 PF13920.1 gi|452206231|ref|YP_007486353.1| - 1.3 8.7 3.9 4.4 7.0 0.2 2.1 1 1 1 2 2 2 0 Zinc finger, C3HC4 type (RING finger) DUF329 PF03884.9 gi|452206231|ref|YP_007486353.1| - 2 8.0 4.7 17 5.0 0.2 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF329) PUA PF01472.15 gi|452206232|ref|YP_007486354.1| - 5.5e-17 61.2 2.0 9.9e-17 60.4 1.4 1.4 1 0 0 1 1 1 1 PUA domain DUF552 PF04472.7 gi|452206233|ref|YP_007486355.1| - 9.2e-16 57.5 2.0 1.2e-15 57.1 1.4 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF552) MoCF_biosynth PF00994.19 gi|452206233|ref|YP_007486355.1| - 0.018 14.4 0.5 0.029 13.7 0.3 1.3 1 0 0 1 1 1 0 Probable molybdopterin binding domain AIM24 PF01987.12 gi|452206234|ref|YP_007486356.1| - 1.7e-42 145.2 0.3 2e-42 145.1 0.2 1.0 1 0 0 1 1 1 1 Mitochondrial biogenesis AIM24 MOSC PF03473.12 gi|452206235|ref|YP_007486357.1| - 3.4e-22 78.3 0.0 5.6e-22 77.6 0.0 1.3 1 0 0 1 1 1 1 MOSC domain MOSC_N PF03476.11 gi|452206235|ref|YP_007486357.1| - 5.2e-12 45.5 0.1 8.1e-11 41.6 0.0 2.4 2 1 1 3 3 3 1 MOSC N-terminal beta barrel domain KaiC PF06745.8 gi|452206237|ref|YP_007486359.1| - 8.6e-44 149.3 0.0 1e-43 149.0 0.0 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|452206237|ref|YP_007486359.1| - 3e-12 46.3 0.0 4.1e-12 45.9 0.0 1.2 1 0 0 1 1 1 1 AAA domain GvpD PF07088.6 gi|452206237|ref|YP_007486359.1| - 8.5e-08 30.9 0.0 1.6e-07 30.0 0.0 1.3 1 1 0 1 1 1 1 GvpD gas vesicle protein RecA PF00154.16 gi|452206237|ref|YP_007486359.1| - 2.8e-06 26.6 0.2 8.3e-06 25.0 0.1 1.7 2 0 0 2 2 2 1 recA bacterial DNA recombination protein AAA_19 PF13245.1 gi|452206237|ref|YP_007486359.1| - 2e-05 24.2 0.0 4.6e-05 23.1 0.0 1.6 1 0 0 1 1 1 1 Part of AAA domain Arch_ATPase PF01637.13 gi|452206237|ref|YP_007486359.1| - 0.00024 20.8 0.0 0.00035 20.3 0.0 1.3 1 1 0 1 1 1 1 Archaeal ATPase AAA_22 PF13401.1 gi|452206237|ref|YP_007486359.1| - 0.00059 19.9 0.1 0.0023 18.0 0.1 1.8 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|452206237|ref|YP_007486359.1| - 0.00099 19.3 0.9 0.067 13.3 0.6 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.1 gi|452206237|ref|YP_007486359.1| - 0.0012 19.6 0.0 0.0026 18.5 0.0 1.7 2 0 0 2 2 2 1 AAA domain Zeta_toxin PF06414.7 gi|452206237|ref|YP_007486359.1| - 0.0024 17.0 0.1 0.0054 15.8 0.0 1.5 2 0 0 2 2 2 1 Zeta toxin AAA_33 PF13671.1 gi|452206237|ref|YP_007486359.1| - 0.0026 17.6 0.1 0.0045 16.8 0.0 1.6 1 1 0 1 1 1 1 AAA domain IstB_IS21 PF01695.12 gi|452206237|ref|YP_007486359.1| - 0.0027 17.1 0.0 0.0053 16.1 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_16 PF13191.1 gi|452206237|ref|YP_007486359.1| - 0.0032 17.4 0.2 0.0044 17.0 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain PAXNEB PF05625.6 gi|452206237|ref|YP_007486359.1| - 0.0039 16.0 0.9 0.026 13.3 0.2 2.0 1 1 0 2 2 2 1 PAXNEB protein AAA_28 PF13521.1 gi|452206237|ref|YP_007486359.1| - 0.0052 16.7 0.0 0.038 13.9 0.0 2.0 2 0 0 2 2 2 1 AAA domain DnaB_C PF03796.10 gi|452206237|ref|YP_007486359.1| - 0.0065 15.3 0.0 0.011 14.6 0.0 1.3 1 0 0 1 1 1 1 DnaB-like helicase C terminal domain AAA_10 PF12846.2 gi|452206237|ref|YP_007486359.1| - 0.0069 15.8 0.0 0.008 15.6 0.0 1.2 1 0 0 1 1 1 1 AAA-like domain AAA_14 PF13173.1 gi|452206237|ref|YP_007486359.1| - 0.011 15.6 0.0 0.026 14.4 0.0 1.6 2 0 0 2 2 2 0 AAA domain DUF2075 PF09848.4 gi|452206237|ref|YP_007486359.1| - 0.015 14.2 0.0 0.017 14.1 0.0 1.3 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) T2SE PF00437.15 gi|452206237|ref|YP_007486359.1| - 0.016 14.0 0.1 0.035 13.0 0.0 1.5 2 0 0 2 2 2 0 Type II/IV secretion system protein AAA_18 PF13238.1 gi|452206237|ref|YP_007486359.1| - 0.017 15.4 0.1 0.022 15.0 0.1 1.5 1 1 0 1 1 1 0 AAA domain cobW PF02492.14 gi|452206237|ref|YP_007486359.1| - 0.017 14.5 0.2 0.048 13.0 0.0 1.7 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain NACHT PF05729.7 gi|452206237|ref|YP_007486359.1| - 0.02 14.5 0.0 0.036 13.7 0.0 1.4 1 0 0 1 1 1 0 NACHT domain Viral_helicase1 PF01443.13 gi|452206237|ref|YP_007486359.1| - 0.062 12.8 0.0 0.11 11.9 0.0 1.5 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase Zot PF05707.7 gi|452206237|ref|YP_007486359.1| - 0.082 12.3 0.0 0.15 11.5 0.0 1.5 1 0 0 1 1 1 0 Zonular occludens toxin (Zot) DAP3 PF10236.4 gi|452206237|ref|YP_007486359.1| - 0.09 11.7 0.1 0.89 8.4 0.0 1.9 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 KTI12 PF08433.5 gi|452206237|ref|YP_007486359.1| - 0.13 11.4 0.0 0.23 10.6 0.0 1.4 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA_35 PF14516.1 gi|452206237|ref|YP_007486359.1| - 0.13 10.9 0.0 2.4 6.7 0.0 2.0 2 0 0 2 2 2 0 AAA-like domain FGGY_N PF00370.16 gi|452206238|ref|YP_007486360.1| - 3.2e-71 239.5 0.0 4.3e-71 239.0 0.0 1.2 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain FGGY_C PF02782.11 gi|452206238|ref|YP_007486360.1| - 3.2e-57 193.3 1.1 5.4e-57 192.6 0.8 1.4 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain BcrAD_BadFG PF01869.15 gi|452206238|ref|YP_007486360.1| - 0.024 13.9 0.2 0.27 10.5 0.0 2.1 2 0 0 2 2 2 0 BadF/BadG/BcrA/BcrD ATPase family PfkB PF00294.19 gi|452206239|ref|YP_007486361.1| - 8.8e-46 156.3 0.3 1e-45 156.2 0.2 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase MR_MLE_C PF13378.1 gi|452206240|ref|YP_007486362.1| - 3.6e-30 104.1 0.1 1.3e-29 102.3 0.0 1.9 2 0 0 2 2 2 1 Enolase C-terminal domain-like MR_MLE_N PF02746.11 gi|452206240|ref|YP_007486362.1| - 1.6e-13 50.6 0.0 3.9e-13 49.4 0.0 1.6 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain MR_MLE PF01188.16 gi|452206240|ref|YP_007486362.1| - 9.7e-12 45.2 3.2 1.3e-10 41.6 0.2 3.3 3 0 0 3 3 3 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain SBP_bac_11 PF13531.1 gi|452206240|ref|YP_007486362.1| - 0.022 14.3 0.0 0.035 13.7 0.0 1.3 1 0 0 1 1 1 0 Bacterial extracellular solute-binding protein DUF1059 PF06348.6 gi|452206240|ref|YP_007486362.1| - 8.4 6.3 6.0 2.1 8.2 0.0 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF1059) DHDPS PF00701.17 gi|452206242|ref|YP_007486364.1| - 1.6e-65 220.5 0.0 1.8e-65 220.3 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family Hydrolase_3 PF08282.7 gi|452206243|ref|YP_007486365.1| - 6.6e-12 45.5 0.0 8.9e-05 22.1 0.0 2.1 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|452206243|ref|YP_007486365.1| - 0.0061 16.7 0.0 0.12 12.5 0.0 2.3 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase ADH_N PF08240.7 gi|452206244|ref|YP_007486366.1| - 8.1e-10 38.4 0.0 1.2e-09 37.8 0.0 1.3 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|452206244|ref|YP_007486366.1| - 3.6e-06 26.5 0.0 5.3e-06 26.0 0.0 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Regulator_TrmB PF11495.3 gi|452206245|ref|YP_007486367.1| - 3.9e-64 215.8 0.1 1.1e-63 214.4 0.0 1.7 2 0 0 2 2 2 1 Archaeal transcriptional regulator TrmB TrmB PF01978.14 gi|452206245|ref|YP_007486367.1| - 7.8e-20 70.3 0.0 1.8e-19 69.1 0.0 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|452206245|ref|YP_007486367.1| - 1.6e-06 27.7 0.0 8.3e-06 25.5 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|452206245|ref|YP_007486367.1| - 9.5e-05 21.9 0.0 0.00029 20.4 0.0 1.8 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|452206245|ref|YP_007486367.1| - 0.00022 20.5 0.0 0.00054 19.2 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.5 gi|452206245|ref|YP_007486367.1| - 0.00025 20.5 0.0 0.00086 18.8 0.0 1.9 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_5 PF01022.15 gi|452206245|ref|YP_007486367.1| - 0.0019 17.8 0.0 0.0046 16.6 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Rrf2 PF02082.15 gi|452206245|ref|YP_007486367.1| - 0.0035 17.4 0.0 0.0083 16.2 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator MarR PF01047.17 gi|452206245|ref|YP_007486367.1| - 0.037 13.7 0.0 0.07 12.8 0.0 1.4 1 0 0 1 1 1 0 MarR family HTH_9 PF08221.6 gi|452206245|ref|YP_007486367.1| - 0.053 13.3 0.0 0.11 12.3 0.0 1.5 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain Aldedh PF00171.17 gi|452206246|ref|YP_007486368.1| - 2.5e-145 484.3 0.3 2.9e-145 484.1 0.2 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.9 gi|452206246|ref|YP_007486368.1| - 0.00062 18.5 0.0 0.00097 17.9 0.0 1.2 1 0 0 1 1 1 1 Acyl-CoA reductase (LuxC) DUF1487 PF07368.6 gi|452206246|ref|YP_007486368.1| - 0.037 13.2 0.0 0.069 12.3 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1487) CBM_19 PF03427.8 gi|452206246|ref|YP_007486368.1| - 0.11 12.2 0.3 0.33 10.7 0.2 1.8 1 0 0 1 1 1 0 Carbohydrate binding domain (family 19) PK PF00224.16 gi|452206247|ref|YP_007486369.1| - 1.6e-107 359.1 5.7 2.6e-107 358.4 4.0 1.3 1 0 0 1 1 1 1 Pyruvate kinase, barrel domain PK_C PF02887.11 gi|452206247|ref|YP_007486369.1| - 5.7e-35 119.3 1.0 1.3e-34 118.1 0.7 1.7 1 0 0 1 1 1 1 Pyruvate kinase, alpha/beta domain PEP-utilizers PF00391.18 gi|452206247|ref|YP_007486369.1| - 9e-12 44.4 0.6 9e-12 44.4 0.4 3.2 3 0 0 3 3 3 1 PEP-utilising enzyme, mobile domain HpcH_HpaI PF03328.9 gi|452206247|ref|YP_007486369.1| - 8.7e-05 21.5 3.4 0.00027 19.8 2.1 2.0 1 1 1 2 2 2 1 HpcH/HpaI aldolase/citrate lyase family MGS PF02142.17 gi|452206248|ref|YP_007486370.1| - 8.8e-14 51.2 0.0 1e-13 50.9 0.0 1.1 1 0 0 1 1 1 1 MGS-like domain HAD_2 PF13419.1 gi|452206250|ref|YP_007486372.1| - 5.3e-20 72.3 0.1 6.7e-20 72.0 0.1 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|452206250|ref|YP_007486372.1| - 7.2e-05 22.4 0.4 0.00064 19.3 0.1 2.3 1 1 1 2 2 2 1 HAD-hyrolase-like Hydrolase PF00702.21 gi|452206250|ref|YP_007486372.1| - 0.00017 22.0 0.1 0.061 13.7 0.1 2.3 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|452206250|ref|YP_007486372.1| - 0.0058 16.8 0.5 0.013 15.7 0.2 1.6 2 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase Peripla_BP_3 PF13377.1 gi|452206250|ref|YP_007486372.1| - 1.3 8.9 5.8 0.22 11.4 0.4 2.0 2 1 0 2 2 2 0 Periplasmic binding protein-like domain AMP-binding PF00501.23 gi|452206251|ref|YP_007486373.1| - 9.6e-06 24.2 0.1 3.5e-05 22.3 0.0 1.8 2 0 0 2 2 2 1 AMP-binding enzyme DsbB PF02600.11 gi|452206253|ref|YP_007486375.1| - 2.6e-28 98.7 9.5 4.5e-28 97.9 6.6 1.4 1 1 0 1 1 1 1 Disulfide bond formation protein DsbB COX7a PF02238.10 gi|452206253|ref|YP_007486375.1| - 0.036 13.7 1.0 0.96 9.2 0.0 2.5 2 0 0 2 2 2 0 Cytochrome c oxidase subunit VIIa Xlink PF00193.12 gi|452206253|ref|YP_007486375.1| - 0.043 13.9 0.2 0.069 13.2 0.0 1.4 1 1 0 1 1 1 0 Extracellular link domain PPDFL PF15060.1 gi|452206253|ref|YP_007486375.1| - 0.11 12.5 0.1 0.17 11.8 0.1 1.3 1 0 0 1 1 1 0 Differentiation and proliferation regulator DUF1860 PF08949.5 gi|452206253|ref|YP_007486375.1| - 2 7.9 5.0 0.46 10.0 0.5 1.9 1 1 0 2 2 2 0 Domain of unknown function (DUF1860) PAS_9 PF13426.1 gi|452206254|ref|YP_007486376.1| - 4.5e-12 46.2 0.0 5.6e-12 45.9 0.0 1.2 1 0 0 1 1 1 1 PAS domain PAS_3 PF08447.6 gi|452206254|ref|YP_007486376.1| - 1.4e-05 25.1 0.0 1.9e-05 24.6 0.0 1.2 1 0 0 1 1 1 1 PAS fold PAS_4 PF08448.5 gi|452206254|ref|YP_007486376.1| - 4.8e-05 23.3 0.2 7.7e-05 22.7 0.1 1.3 1 0 0 1 1 1 1 PAS fold PAS PF00989.19 gi|452206254|ref|YP_007486376.1| - 0.00014 21.6 0.0 0.00021 21.0 0.0 1.3 1 0 0 1 1 1 1 PAS fold DUF903 PF06004.7 gi|452206255|ref|YP_007486377.1| - 0.13 11.8 0.0 0.2 11.2 0.0 1.3 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF903) HisKA PF00512.20 gi|452206257|ref|YP_007486379.1| - 1.5e-08 34.4 0.9 3.7e-08 33.2 0.6 1.8 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.5 gi|452206257|ref|YP_007486379.1| - 0.0002 21.3 0.8 0.0036 17.3 0.5 2.7 2 1 0 2 2 2 1 PAS fold Strabismus PF06638.6 gi|452206257|ref|YP_007486379.1| - 0.0065 14.8 2.1 0.012 13.9 1.5 1.3 1 0 0 1 1 1 1 Strabismus protein DUF202 PF02656.10 gi|452206257|ref|YP_007486379.1| - 0.0099 16.0 0.2 0.0099 16.0 0.1 3.0 2 2 0 2 2 2 1 Domain of unknown function (DUF202) DUF4203 PF13886.1 gi|452206257|ref|YP_007486379.1| - 0.011 15.2 0.3 0.011 15.2 0.2 2.6 2 1 0 2 2 2 0 Domain of unknown function (DUF4203) PAS PF00989.19 gi|452206257|ref|YP_007486379.1| - 0.062 13.0 0.0 0.17 11.6 0.0 1.8 1 0 0 1 1 1 0 PAS fold PAS_9 PF13426.1 gi|452206257|ref|YP_007486379.1| - 0.08 13.3 0.0 0.2 12.0 0.0 1.8 1 1 0 1 1 1 0 PAS domain HAD_2 PF13419.1 gi|452206258|ref|YP_007486380.1| - 4.4e-22 79.1 0.0 5.2e-22 78.9 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|452206258|ref|YP_007486380.1| - 0.00067 20.1 0.1 0.0044 17.4 0.1 1.9 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase 2_5_RNA_ligase2 PF13563.1 gi|452206259|ref|YP_007486381.1| - 1.8e-18 66.7 0.1 2.4e-18 66.3 0.0 1.1 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily LigT_PEase PF02834.11 gi|452206259|ref|YP_007486381.1| - 1.3e-17 63.5 0.1 1.7e-07 31.0 0.0 2.8 2 1 0 2 2 2 2 LigT like Phosphoesterase AKAP7_NLS PF10469.4 gi|452206259|ref|YP_007486381.1| - 8.8e-06 25.5 0.0 9.2e-06 25.5 0.0 1.1 1 0 0 1 1 1 1 AKAP7 2'5' RNA ligase-like domain CPDase PF07823.6 gi|452206259|ref|YP_007486381.1| - 0.053 12.9 0.0 0.073 12.5 0.0 1.2 1 0 0 1 1 1 0 Cyclic phosphodiesterase-like protein NAD_binding_2 PF03446.10 gi|452206260|ref|YP_007486382.1| - 3.2e-36 124.6 0.0 4.8e-36 124.0 0.0 1.2 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 6PGD PF00393.14 gi|452206260|ref|YP_007486382.1| - 1.6e-21 76.7 0.0 2.4e-21 76.2 0.0 1.4 1 0 0 1 1 1 1 6-phosphogluconate dehydrogenase, C-terminal domain F420_oxidored PF03807.12 gi|452206260|ref|YP_007486382.1| - 7.9e-05 23.0 0.1 0.00013 22.3 0.0 1.4 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent TrkA_N PF02254.13 gi|452206260|ref|YP_007486382.1| - 0.00031 20.7 0.0 0.00062 19.7 0.0 1.5 1 0 0 1 1 1 1 TrkA-N domain 3HCDH_N PF02737.13 gi|452206260|ref|YP_007486382.1| - 0.0013 18.4 0.1 0.0023 17.5 0.0 1.5 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|452206260|ref|YP_007486382.1| - 0.0025 16.9 0.0 0.0036 16.4 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_11 PF14833.1 gi|452206260|ref|YP_007486382.1| - 0.006 16.6 0.1 0.027 14.5 0.0 2.1 2 1 0 2 2 2 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase DapB_N PF01113.15 gi|452206260|ref|YP_007486382.1| - 0.048 13.5 0.2 0.086 12.7 0.1 1.5 1 1 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus GFO_IDH_MocA PF01408.17 gi|452206260|ref|YP_007486382.1| - 0.13 12.7 0.0 0.23 12.0 0.0 1.4 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold UDPG_MGDP_dh_N PF03721.9 gi|452206260|ref|YP_007486382.1| - 0.14 11.5 0.0 0.2 11.0 0.0 1.2 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Cys_Met_Meta_PP PF01053.15 gi|452206262|ref|YP_007486384.1| - 2e-133 444.4 0.0 2.2e-133 444.2 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_1_2 PF00155.16 gi|452206262|ref|YP_007486384.1| - 8.1e-07 28.3 0.0 1.1e-06 27.8 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|452206262|ref|YP_007486384.1| - 8.4e-07 28.3 1.2 1.3e-06 27.6 0.8 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.16 gi|452206262|ref|YP_007486384.1| - 4.7e-05 22.6 0.0 8.8e-05 21.7 0.0 1.5 1 1 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.14 gi|452206262|ref|YP_007486384.1| - 0.0012 17.6 0.0 0.0017 17.1 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Acetyltransf_10 PF13673.1 gi|452206262|ref|YP_007486384.1| - 0.0089 16.1 0.1 0.019 15.1 0.1 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Abhydrolase_1 PF00561.15 gi|452206263|ref|YP_007486385.1| - 2.7e-27 95.8 0.2 4e-27 95.2 0.1 1.3 1 0 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.2 gi|452206263|ref|YP_007486385.1| - 9.9e-15 55.0 9.2 1.5e-14 54.4 6.4 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|452206263|ref|YP_007486385.1| - 0.0012 18.5 0.6 0.0077 15.9 0.3 2.1 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_4 PF08386.5 gi|452206263|ref|YP_007486385.1| - 0.039 13.8 0.2 0.12 12.2 0.0 1.9 2 0 0 2 2 2 0 TAP-like protein PQQ_3 PF13570.1 gi|452206264|ref|YP_007486386.1| - 1.9e-65 215.4 51.6 1.1e-11 44.6 1.8 9.4 9 0 0 9 9 9 8 PQQ-like domain PQQ_2 PF13360.1 gi|452206264|ref|YP_007486386.1| - 2.7e-58 197.2 20.4 2e-33 115.8 2.0 3.9 1 1 2 3 3 3 3 PQQ-like domain PQQ PF01011.16 gi|452206264|ref|YP_007486386.1| - 2.2e-51 168.9 24.0 1.4e-09 36.9 0.0 8.5 8 1 0 8 8 8 8 PQQ enzyme repeat PsbP PF01789.11 gi|452206264|ref|YP_007486386.1| - 0.00018 20.9 0.5 7.5 5.9 0.0 4.8 6 0 0 6 6 6 2 PsbP Cys_Met_Meta_PP PF01053.15 gi|452206265|ref|YP_007486387.1| - 4e-137 456.6 0.0 4.6e-137 456.4 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_1_2 PF00155.16 gi|452206265|ref|YP_007486387.1| - 6.7e-08 31.8 0.0 9.1e-08 31.4 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|452206265|ref|YP_007486387.1| - 7.6e-06 25.1 0.3 1.2e-05 24.5 0.2 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.14 gi|452206265|ref|YP_007486387.1| - 6.3e-05 21.8 0.0 9.8e-05 21.2 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|452206265|ref|YP_007486387.1| - 0.0024 17.0 0.0 0.0043 16.2 0.0 1.5 1 0 0 1 1 1 1 Beta-eliminating lyase Usp PF00582.21 gi|452206267|ref|YP_007486389.1| - 0.0006 20.0 0.2 0.0011 19.2 0.1 1.5 1 0 0 1 1 1 1 Universal stress protein family HAD PF12710.2 gi|452206268|ref|YP_007486390.1| - 2.4e-18 67.0 0.3 2.9e-18 66.7 0.2 1.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|452206268|ref|YP_007486390.1| - 1.8e-11 44.8 1.9 2.9e-07 31.1 0.3 2.2 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|452206268|ref|YP_007486390.1| - 1.9e-11 44.0 1.2 2.2e-08 33.9 0.1 3.0 2 1 1 3 3 3 2 haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|452206268|ref|YP_007486390.1| - 1.2e-07 32.1 0.3 7.4e-07 29.5 0.0 1.9 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Put_Phosphatase PF06888.7 gi|452206268|ref|YP_007486390.1| - 0.0016 17.6 0.0 0.022 13.9 0.0 2.0 2 0 0 2 2 2 1 Putative Phosphatase 2-Hacid_dh_C PF02826.14 gi|452206269|ref|YP_007486391.1| - 1.9e-59 199.7 0.0 4.1e-59 198.7 0.0 1.6 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|452206269|ref|YP_007486391.1| - 3.1e-36 123.7 1.0 1.4e-35 121.6 0.9 1.8 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ELFV_dehydrog PF00208.16 gi|452206269|ref|YP_007486391.1| - 2.3e-05 24.0 0.0 9.5e-05 22.0 0.0 2.0 2 0 0 2 2 2 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ACT PF01842.20 gi|452206269|ref|YP_007486391.1| - 9.3e-05 21.8 0.2 0.00055 19.3 0.0 2.5 2 0 0 2 2 2 1 ACT domain IlvN PF07991.7 gi|452206269|ref|YP_007486391.1| - 0.00075 18.9 0.0 0.0022 17.3 0.0 1.8 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain UDPG_MGDP_dh_C PF03720.10 gi|452206269|ref|YP_007486391.1| - 0.0011 19.1 0.1 0.0043 17.1 0.0 2.1 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NAD_binding_2 PF03446.10 gi|452206269|ref|YP_007486391.1| - 0.0015 18.3 0.9 0.0039 17.0 0.1 2.2 2 1 1 3 3 3 1 NAD binding domain of 6-phosphogluconate dehydrogenase AdoHcyase_NAD PF00670.16 gi|452206269|ref|YP_007486391.1| - 0.01 15.6 0.8 0.23 11.2 0.1 2.6 2 0 0 2 2 2 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain TrkA_N PF02254.13 gi|452206269|ref|YP_007486391.1| - 0.024 14.6 1.6 0.075 13.0 0.0 2.7 3 0 0 3 3 3 0 TrkA-N domain NAD_binding_7 PF13241.1 gi|452206269|ref|YP_007486391.1| - 0.04 14.1 0.0 0.11 12.7 0.0 1.8 1 0 0 1 1 1 0 Putative NAD(P)-binding eRF1_2 PF03464.10 gi|452206270|ref|YP_007486392.1| - 3.2e-36 124.6 0.0 8.1e-36 123.2 0.0 1.7 1 0 0 1 1 1 1 eRF1 domain 2 eRF1_3 PF03465.10 gi|452206270|ref|YP_007486392.1| - 7.1e-29 100.3 0.9 1.4e-28 99.3 0.1 1.9 2 0 0 2 2 2 1 eRF1 domain 3 eRF1_1 PF03463.10 gi|452206270|ref|YP_007486392.1| - 3.4e-26 91.3 0.0 5.4e-26 90.7 0.0 1.3 1 0 0 1 1 1 1 eRF1 domain 1 DUF373 PF04123.8 gi|452206271|ref|YP_007486393.1| - 1.9e-92 309.9 4.7 2.2e-92 309.7 3.3 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF373) DUF1206 PF06724.6 gi|452206271|ref|YP_007486393.1| - 0.021 14.5 2.2 0.021 14.5 1.5 4.3 5 0 0 5 5 5 0 Domain of Unknown Function (DUF1206) ATP_bind_4 PF01902.12 gi|452206272|ref|YP_007486394.1| - 3.6e-50 170.3 0.0 1.1e-49 168.7 0.0 1.6 1 1 0 1 1 1 1 ATP-binding region ThiI PF02568.9 gi|452206272|ref|YP_007486394.1| - 0.14 11.5 0.0 0.2 11.0 0.0 1.2 1 0 0 1 1 1 0 Thiamine biosynthesis protein (ThiI) NTP_transferase PF00483.18 gi|452206273|ref|YP_007486395.1| - 1.9e-37 128.9 0.0 2.3e-37 128.6 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|452206273|ref|YP_007486395.1| - 3.4e-11 43.4 0.0 5e-11 42.9 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.19 gi|452206273|ref|YP_007486395.1| - 0.031 13.7 0.7 0.62 9.6 0.0 3.1 3 1 0 3 3 3 0 Bacterial transferase hexapeptide (six repeats) Pentapeptide_3 PF13576.1 gi|452206273|ref|YP_007486395.1| - 0.032 14.1 0.0 0.4 10.6 0.0 2.6 2 1 0 2 2 2 0 Pentapeptide repeats (9 copies) IspD PF01128.14 gi|452206273|ref|YP_007486395.1| - 0.056 12.9 0.0 0.093 12.2 0.0 1.5 1 0 0 1 1 1 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase HTH_20 PF12840.2 gi|452206274|ref|YP_007486396.1| - 0.0059 16.3 0.1 0.0098 15.6 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain Zn-ribbon_8 PF09723.5 gi|452206274|ref|YP_007486396.1| - 0.13 12.2 3.2 0.36 10.8 2.0 1.9 1 1 1 2 2 2 0 Zinc ribbon domain FYDLN_acid PF09538.5 gi|452206274|ref|YP_007486396.1| - 0.16 12.6 0.6 0.27 11.8 0.4 1.4 1 0 0 1 1 1 0 Protein of unknown function (FYDLN_acid) zf-ribbon_3 PF13248.1 gi|452206274|ref|YP_007486396.1| - 0.23 10.7 1.9 4.7 6.5 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-trcl PF13451.1 gi|452206274|ref|YP_007486396.1| - 0.87 9.2 4.5 1 9.0 2.1 1.8 1 1 1 2 2 2 0 Probable zinc-binding domain PhnA_Zn_Ribbon PF08274.7 gi|452206274|ref|YP_007486396.1| - 1.3 8.8 3.8 1.3 8.8 0.2 2.1 2 0 0 2 2 2 0 PhnA Zinc-Ribbon AAA_3 PF07726.6 gi|452206275|ref|YP_007486397.1| - 1.4e-62 209.1 0.1 2e-62 208.5 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|452206275|ref|YP_007486397.1| - 5.8e-13 48.7 0.0 1e-12 47.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.24 gi|452206275|ref|YP_007486397.1| - 0.00018 21.7 0.0 0.00041 20.5 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.21 gi|452206275|ref|YP_007486397.1| - 0.00042 19.8 0.0 0.0073 15.7 0.0 2.1 1 1 0 1 1 1 1 Sigma-54 interaction domain RuvB_N PF05496.7 gi|452206275|ref|YP_007486397.1| - 0.00098 18.2 0.0 0.012 14.7 0.0 2.2 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus Mg_chelatase PF01078.16 gi|452206275|ref|YP_007486397.1| - 0.0016 17.6 0.4 0.0073 15.4 0.0 2.2 3 0 0 3 3 3 1 Magnesium chelatase, subunit ChlI AAA_16 PF13191.1 gi|452206275|ref|YP_007486397.1| - 0.032 14.2 0.1 0.1 12.5 0.1 2.2 1 1 0 1 1 1 0 AAA ATPase domain DUF1513 PF07433.6 gi|452206275|ref|YP_007486397.1| - 0.065 12.1 0.0 0.096 11.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1513) AAA_22 PF13401.1 gi|452206275|ref|YP_007486397.1| - 0.091 12.8 0.0 0.21 11.7 0.0 1.7 1 1 0 1 1 1 0 AAA domain MCM PF00493.18 gi|452206275|ref|YP_007486397.1| - 0.097 11.4 0.0 0.15 10.8 0.0 1.3 1 1 0 1 1 1 0 MCM2/3/5 family AAA_2 PF07724.9 gi|452206275|ref|YP_007486397.1| - 0.13 12.1 0.0 0.29 11.0 0.0 1.6 1 1 0 1 1 1 0 AAA domain (Cdc48 subfamily) DUF58 PF01882.13 gi|452206276|ref|YP_007486398.1| - 1.8e-12 47.2 0.1 6.2e-12 45.5 0.0 2.0 2 0 0 2 2 2 1 Protein of unknown function DUF58 Transglut_core PF01841.14 gi|452206277|ref|YP_007486399.1| - 8.3e-29 100.0 0.1 1.7e-28 99.1 0.1 1.5 1 0 0 1 1 1 1 Transglutaminase-like superfamily DUF4129 PF13559.1 gi|452206277|ref|YP_007486399.1| - 0.0002 21.2 6.1 0.0002 21.2 4.3 5.3 5 0 0 5 5 5 1 Domain of unknown function (DUF4129) Transglut_core3 PF13471.1 gi|452206277|ref|YP_007486399.1| - 0.0027 17.4 0.0 0.011 15.5 0.0 2.1 1 1 0 1 1 1 1 Transglutaminase-like superfamily SUI1 PF01253.17 gi|452206278|ref|YP_007486400.1| - 3.1e-25 87.7 0.0 3.6e-25 87.5 0.0 1.1 1 0 0 1 1 1 1 Translation initiation factor SUI1 DTW PF03942.10 gi|452206278|ref|YP_007486400.1| - 0.067 12.3 0.6 0.078 12.1 0.4 1.1 1 0 0 1 1 1 0 DTW domain Img2 PF05046.9 gi|452206278|ref|YP_007486400.1| - 0.12 12.5 0.0 0.17 12.1 0.0 1.5 1 1 0 1 1 1 0 Mitochondrial large subunit ribosomal protein (Img2) Rhodanese PF00581.15 gi|452206279|ref|YP_007486401.1| - 1.4e-13 51.1 0.0 1.7e-13 50.9 0.0 1.1 1 0 0 1 1 1 1 Rhodanese-like domain DUF1628 PF07790.6 gi|452206280|ref|YP_007486402.1| - 2.3e-15 57.0 0.0 3.8e-15 56.4 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1628) NUDIX PF00293.23 gi|452206281|ref|YP_007486403.1| - 6.3e-12 45.2 0.5 1.1e-11 44.4 0.4 1.4 1 0 0 1 1 1 1 NUDIX domain Acetyltransf_1 PF00583.19 gi|452206284|ref|YP_007486406.1| - 1e-17 63.8 1.0 1.4e-17 63.4 0.7 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|452206284|ref|YP_007486406.1| - 8.7e-10 38.7 0.1 1.1e-09 38.4 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|452206284|ref|YP_007486406.1| - 9e-09 35.3 0.0 1.3e-08 34.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|452206284|ref|YP_007486406.1| - 1.3e-07 31.2 0.1 1.8e-07 30.7 0.0 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.1 gi|452206284|ref|YP_007486406.1| - 1.2e-06 28.4 0.0 2e-06 27.6 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|452206284|ref|YP_007486406.1| - 0.006 16.4 0.0 0.0076 16.1 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|452206284|ref|YP_007486406.1| - 0.013 15.6 0.0 0.016 15.3 0.0 1.1 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain DUF3749 PF12568.3 gi|452206284|ref|YP_007486406.1| - 0.036 13.6 0.1 0.056 13.0 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain DDE_Tnp_IS240 PF13610.1 gi|452206285|ref|YP_007486407.1| - 8.4e-16 58.2 0.1 1.1e-15 57.7 0.1 1.2 1 0 0 1 1 1 1 DDE domain DDE_Tnp_IS66 PF03050.9 gi|452206285|ref|YP_007486407.1| - 4e-07 29.5 1.2 9.8e-07 28.2 0.8 1.6 1 1 0 1 1 1 1 Transposase IS66 family DDE_3 PF13358.1 gi|452206285|ref|YP_007486407.1| - 0.0017 18.1 0.0 0.006 16.3 0.0 1.9 1 1 0 1 1 1 1 DDE superfamily endonuclease FSA_C PF10479.4 gi|452206285|ref|YP_007486407.1| - 0.0043 15.1 0.0 0.0061 14.6 0.0 1.2 1 0 0 1 1 1 1 Fragile site-associated protein C-terminus HTH_28 PF13518.1 gi|452206285|ref|YP_007486407.1| - 0.036 14.0 0.0 0.37 10.8 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_23 PF13384.1 gi|452206285|ref|YP_007486407.1| - 0.063 12.9 0.6 3.8 7.2 0.6 2.7 2 1 0 2 2 2 0 Homeodomain-like domain Acetyltransf_11 PF13720.1 gi|452206285|ref|YP_007486407.1| - 0.14 12.4 0.0 0.31 11.2 0.0 1.5 1 0 0 1 1 1 0 Udp N-acetylglucosamine O-acyltransferase; Domain 2 OrfB_IS605 PF01385.14 gi|452206286|ref|YP_007486408.1| - 9.2e-61 205.1 0.0 1.2e-60 204.7 0.0 1.1 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|452206286|ref|YP_007486408.1| - 3.6e-19 68.1 0.3 8.9e-19 66.9 0.2 1.7 1 0 0 1 1 1 1 Putative transposase DNA-binding domain CN_hydrolase PF00795.17 gi|452206288|ref|YP_007486410.1| - 1.4e-30 106.0 0.0 1.9e-30 105.5 0.0 1.2 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase DICT PF10069.4 gi|452206289|ref|YP_007486411.1| - 8.8e-16 57.6 0.0 1.9e-15 56.5 0.0 1.5 1 0 0 1 1 1 1 Sensory domain found in DIguanylate Cyclases & Two-component systems DUF2249 PF10006.4 gi|452206289|ref|YP_007486411.1| - 0.0006 19.3 0.2 0.0035 16.8 0.0 2.3 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2249) SRP54 PF00448.17 gi|452206290|ref|YP_007486412.1| - 6.4e-67 224.8 0.1 8.4e-67 224.4 0.1 1.1 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP54_N PF02881.14 gi|452206290|ref|YP_007486412.1| - 6e-11 42.2 0.6 1.4e-10 41.1 0.4 1.6 1 0 0 1 1 1 1 SRP54-type protein, helical bundle domain Zeta_toxin PF06414.7 gi|452206290|ref|YP_007486412.1| - 1.3e-05 24.4 0.1 2e-05 23.7 0.0 1.3 1 0 0 1 1 1 1 Zeta toxin APS_kinase PF01583.15 gi|452206290|ref|YP_007486412.1| - 5.2e-05 22.9 0.0 0.00011 21.9 0.0 1.5 1 0 0 1 1 1 1 Adenylylsulphate kinase AAA_22 PF13401.1 gi|452206290|ref|YP_007486412.1| - 0.00017 21.6 0.0 0.00035 20.6 0.0 1.5 1 0 0 1 1 1 1 AAA domain Thymidylate_kin PF02223.12 gi|452206290|ref|YP_007486412.1| - 0.00058 19.2 0.1 0.011 15.0 0.0 2.3 2 0 0 2 2 2 1 Thymidylate kinase cobW PF02492.14 gi|452206290|ref|YP_007486412.1| - 0.0021 17.5 0.3 0.0035 16.7 0.2 1.3 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain MobB PF03205.9 gi|452206290|ref|YP_007486412.1| - 0.0032 17.1 0.1 0.0081 15.8 0.1 1.7 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B ArgK PF03308.11 gi|452206290|ref|YP_007486412.1| - 0.0042 15.9 1.1 0.041 12.6 0.8 2.1 1 1 0 1 1 1 1 ArgK protein AAA_16 PF13191.1 gi|452206290|ref|YP_007486412.1| - 0.0048 16.9 2.7 0.009 16.0 0.0 2.5 1 1 1 2 2 2 1 AAA ATPase domain CbiA PF01656.18 gi|452206290|ref|YP_007486412.1| - 0.0063 15.9 0.7 0.023 14.1 0.5 1.9 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_30 PF13604.1 gi|452206290|ref|YP_007486412.1| - 0.0087 15.6 2.3 0.033 13.7 1.6 1.9 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|452206290|ref|YP_007486412.1| - 0.0099 15.7 0.0 0.023 14.5 0.0 1.7 2 0 0 2 2 2 1 AAA domain NTPase_1 PF03266.10 gi|452206290|ref|YP_007486412.1| - 0.015 15.0 0.1 0.032 13.9 0.1 1.5 1 0 0 1 1 1 0 NTPase KTI12 PF08433.5 gi|452206290|ref|YP_007486412.1| - 0.018 14.2 0.0 0.031 13.4 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 6PF2K PF01591.13 gi|452206290|ref|YP_007486412.1| - 0.05 12.6 0.0 0.087 11.8 0.0 1.3 1 0 0 1 1 1 0 6-phosphofructo-2-kinase AAA_28 PF13521.1 gi|452206290|ref|YP_007486412.1| - 0.058 13.3 3.4 0.11 12.3 0.7 2.7 2 1 0 2 2 2 0 AAA domain ATP_bind_1 PF03029.12 gi|452206290|ref|YP_007486412.1| - 0.068 12.7 0.0 0.12 11.8 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_17 PF13207.1 gi|452206290|ref|YP_007486412.1| - 0.07 13.9 1.2 0.64 10.8 0.1 2.6 1 1 0 2 2 2 0 AAA domain AAA_19 PF13245.1 gi|452206290|ref|YP_007486412.1| - 0.075 12.7 0.0 0.29 10.8 0.0 2.1 1 0 0 1 1 1 0 Part of AAA domain AAA_29 PF13555.1 gi|452206290|ref|YP_007486412.1| - 0.14 11.7 0.0 0.28 10.7 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain Prefoldin PF02996.12 gi|452206291|ref|YP_007486413.1| - 1.3e-21 76.4 13.8 4.3e-21 74.7 9.3 2.0 1 1 0 1 1 1 1 Prefoldin subunit Prefoldin_2 PF01920.15 gi|452206291|ref|YP_007486413.1| - 4.8e-10 39.1 25.6 2.3e-06 27.3 4.2 2.8 1 1 2 3 3 3 2 Prefoldin subunit APG6 PF04111.7 gi|452206291|ref|YP_007486413.1| - 0.00012 21.2 17.5 0.01 14.9 5.3 2.0 2 0 0 2 2 2 2 Autophagy protein Apg6 TBPIP PF07106.8 gi|452206291|ref|YP_007486413.1| - 0.00022 20.8 11.3 0.012 15.1 2.5 2.1 2 0 0 2 2 2 2 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Ax_dynein_light PF10211.4 gi|452206291|ref|YP_007486413.1| - 0.0022 17.8 19.0 0.038 13.8 7.4 2.1 2 0 0 2 2 2 2 Axonemal dynein light chain Tropomyosin PF00261.15 gi|452206291|ref|YP_007486413.1| - 0.0033 16.5 6.3 0.0033 16.5 4.3 2.1 2 0 0 2 2 2 1 Tropomyosin TMF_DNA_bd PF12329.3 gi|452206291|ref|YP_007486413.1| - 0.0048 16.6 6.0 0.0048 16.6 4.2 2.5 2 1 0 2 2 2 1 TATA element modulatory factor 1 DNA binding Nsp1_C PF05064.8 gi|452206291|ref|YP_007486413.1| - 0.0051 16.4 0.9 0.0051 16.4 0.6 2.2 2 0 0 2 2 2 1 Nsp1-like C-terminal region DUF724 PF05266.9 gi|452206291|ref|YP_007486413.1| - 0.0057 16.3 14.2 0.19 11.2 1.2 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF724) DUF3450 PF11932.3 gi|452206291|ref|YP_007486413.1| - 0.0062 15.8 18.7 0.019 14.2 7.2 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF3450) Syntaxin-6_N PF09177.6 gi|452206291|ref|YP_007486413.1| - 0.0068 16.7 10.0 0.062 13.7 1.9 2.3 2 0 0 2 2 2 1 Syntaxin 6, N-terminal CENP-F_leu_zip PF10473.4 gi|452206291|ref|YP_007486413.1| - 0.0071 16.2 21.0 0.11 12.3 7.8 2.2 2 0 0 2 2 2 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 CENP-Q PF13094.1 gi|452206291|ref|YP_007486413.1| - 0.009 16.0 2.9 0.009 16.0 2.0 2.2 2 0 0 2 2 2 1 CENP-Q, a CENPA-CAD centromere complex subunit Tropomyosin_1 PF12718.2 gi|452206291|ref|YP_007486413.1| - 0.012 15.4 23.2 0.18 11.6 2.2 2.2 2 0 0 2 2 2 0 Tropomyosin like Myosin_tail_1 PF01576.14 gi|452206291|ref|YP_007486413.1| - 0.014 13.2 18.6 0.11 10.1 7.4 2.0 2 0 0 2 2 2 0 Myosin tail GAS PF13851.1 gi|452206291|ref|YP_007486413.1| - 0.015 14.5 13.2 0.044 12.9 2.8 2.1 2 0 0 2 2 2 0 Growth-arrest specific micro-tubule binding Rab5-bind PF09311.6 gi|452206291|ref|YP_007486413.1| - 0.018 14.9 16.2 0.084 12.7 0.0 2.2 2 0 0 2 2 2 0 Rabaptin-like protein TSC22 PF01166.13 gi|452206291|ref|YP_007486413.1| - 0.022 14.6 7.6 0.022 14.6 5.2 2.4 2 1 0 2 2 2 0 TSC-22/dip/bun family Reo_sigmaC PF04582.7 gi|452206291|ref|YP_007486413.1| - 0.024 13.8 0.2 0.03 13.4 0.2 1.1 1 0 0 1 1 1 0 Reovirus sigma C capsid protein IncA PF04156.9 gi|452206291|ref|YP_007486413.1| - 0.024 14.2 21.1 41 3.7 14.6 2.1 1 1 0 1 1 1 0 IncA protein DUF2317 PF10079.4 gi|452206291|ref|YP_007486413.1| - 0.026 13.1 11.6 0.013 14.0 3.3 2.0 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2317) ERM PF00769.14 gi|452206291|ref|YP_007486413.1| - 0.029 13.8 21.1 0.47 9.9 8.7 2.1 2 0 0 2 2 2 0 Ezrin/radixin/moesin family ALIX_LYPXL_bnd PF13949.1 gi|452206291|ref|YP_007486413.1| - 0.03 13.2 10.9 0.42 9.5 3.4 2.1 2 0 0 2 2 2 0 ALIX V-shaped domain binding to HIV AAA_13 PF13166.1 gi|452206291|ref|YP_007486413.1| - 0.032 12.7 11.1 0.11 10.9 1.9 2.0 2 0 0 2 2 2 0 AAA domain DUF4140 PF13600.1 gi|452206291|ref|YP_007486413.1| - 0.037 14.4 21.4 0.75 10.2 2.2 3.0 1 1 2 3 3 3 0 N-terminal domain of unknown function (DUF4140) DUF1192 PF06698.6 gi|452206291|ref|YP_007486413.1| - 0.041 13.6 4.9 0.041 13.6 3.4 2.7 2 1 0 2 2 2 0 Protein of unknown function (DUF1192) COG2 PF06148.6 gi|452206291|ref|YP_007486413.1| - 0.051 13.4 4.7 1.9 8.3 1.1 2.2 2 0 0 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 DUF4337 PF14235.1 gi|452206291|ref|YP_007486413.1| - 0.059 13.2 17.3 0.13 12.0 6.9 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4337) DUF3166 PF11365.3 gi|452206291|ref|YP_007486413.1| - 0.068 13.6 5.6 0.56 10.7 0.2 2.3 1 1 0 2 2 2 0 Protein of unknown function (DUF3166) WXG100 PF06013.7 gi|452206291|ref|YP_007486413.1| - 0.076 13.0 16.5 0.31 11.0 5.6 2.5 2 0 0 2 2 2 0 Proteins of 100 residues with WXG DUF972 PF06156.8 gi|452206291|ref|YP_007486413.1| - 0.098 13.0 12.7 2.3 8.5 0.2 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF972) LLC1 PF14945.1 gi|452206291|ref|YP_007486413.1| - 0.099 12.9 3.8 2.6 8.3 0.0 2.1 2 0 0 2 2 2 0 Normal lung function maintenance, Low in Lung Cancer 1 protein YlqD PF11068.3 gi|452206291|ref|YP_007486413.1| - 0.11 12.5 20.7 1.1 9.3 0.9 2.3 2 0 0 2 2 2 0 YlqD protein FliD_C PF07195.7 gi|452206291|ref|YP_007486413.1| - 0.11 11.7 13.4 0.95 8.7 9.3 2.0 1 1 0 1 1 1 0 Flagellar hook-associated protein 2 C-terminus THOC7 PF05615.8 gi|452206291|ref|YP_007486413.1| - 0.12 12.6 12.6 0.23 11.7 1.6 2.2 2 0 0 2 2 2 0 Tho complex subunit 7 HalX PF08663.5 gi|452206291|ref|YP_007486413.1| - 0.12 12.4 10.3 0.16 11.9 2.1 2.7 2 1 0 2 2 2 0 HalX domain TMF_TATA_bd PF12325.3 gi|452206291|ref|YP_007486413.1| - 0.14 11.9 17.7 0.31 10.7 0.7 2.2 2 0 0 2 2 2 0 TATA element modulatory factor 1 TATA binding Spc24 PF08286.6 gi|452206291|ref|YP_007486413.1| - 0.17 11.6 20.1 1.4 8.6 0.4 2.1 2 0 0 2 2 2 0 Spc24 subunit of Ndc80 DUF2130 PF09903.4 gi|452206291|ref|YP_007486413.1| - 0.17 10.5 9.8 0.13 11.0 2.3 2.0 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2130) Mnd1 PF03962.10 gi|452206291|ref|YP_007486413.1| - 0.18 11.4 17.2 0.71 9.5 6.5 2.1 2 0 0 2 2 2 0 Mnd1 family DUF904 PF06005.7 gi|452206291|ref|YP_007486413.1| - 0.18 12.1 23.5 0.93 9.8 2.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF904) Hemerythrin PF01814.18 gi|452206291|ref|YP_007486413.1| - 0.19 11.8 6.6 1.6 8.9 0.1 2.2 1 1 1 2 2 2 0 Hemerythrin HHE cation binding domain DUF812 PF05667.6 gi|452206291|ref|YP_007486413.1| - 0.2 10.1 15.5 0.48 8.8 4.5 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF812) FliD_N PF02465.13 gi|452206291|ref|YP_007486413.1| - 0.2 12.0 0.0 0.2 12.0 0.0 2.8 1 1 2 3 3 2 0 Flagellar hook-associated protein 2 N-terminus Cob_adeno_trans PF01923.13 gi|452206291|ref|YP_007486413.1| - 0.23 11.2 9.3 0.02 14.6 1.8 2.2 1 1 1 2 2 2 0 Cobalamin adenosyltransferase Sipho_Gp157 PF05565.6 gi|452206291|ref|YP_007486413.1| - 0.25 10.9 11.6 0.91 9.0 3.7 2.2 2 0 0 2 2 2 0 Siphovirus Gp157 CDC37_N PF03234.9 gi|452206291|ref|YP_007486413.1| - 0.26 11.5 14.0 0.67 10.2 9.7 1.6 1 1 0 1 1 1 0 Cdc37 N terminal kinase binding Transposase_22 PF02994.9 gi|452206291|ref|YP_007486413.1| - 0.26 9.7 14.5 1.6 7.0 10.1 1.8 1 1 0 1 1 1 0 L1 transposable element DUF342 PF03961.8 gi|452206291|ref|YP_007486413.1| - 0.28 9.5 15.0 0.57 8.5 4.1 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF342) TelA PF05816.6 gi|452206291|ref|YP_007486413.1| - 0.31 9.6 15.8 0.053 12.2 5.5 2.0 2 0 0 2 2 2 0 Toxic anion resistance protein (TelA) DUF3375 PF11855.3 gi|452206291|ref|YP_007486413.1| - 0.32 9.6 14.5 1.4 7.5 4.6 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3375) Spectrin PF00435.16 gi|452206291|ref|YP_007486413.1| - 0.35 11.1 17.6 3.3 8.0 6.9 2.3 2 0 0 2 2 2 0 Spectrin repeat DUF4618 PF15397.1 gi|452206291|ref|YP_007486413.1| - 0.4 9.9 13.2 0.33 10.2 2.9 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4618) Fib_alpha PF08702.5 gi|452206291|ref|YP_007486413.1| - 0.44 10.6 9.7 2.8 8.0 4.1 2.2 2 0 0 2 2 2 0 Fibrinogen alpha/beta chain family DUF948 PF06103.6 gi|452206291|ref|YP_007486413.1| - 0.45 10.4 9.8 7 6.5 3.7 2.4 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF948) Fzo_mitofusin PF04799.8 gi|452206291|ref|YP_007486413.1| - 0.54 9.6 8.3 2.4 7.4 2.5 2.2 2 0 0 2 2 2 0 fzo-like conserved region DivIVA PF05103.8 gi|452206291|ref|YP_007486413.1| - 0.54 10.3 18.1 0.88 9.6 5.0 2.1 2 0 0 2 2 2 0 DivIVA protein DASH_Dam1 PF08653.5 gi|452206291|ref|YP_007486413.1| - 0.59 9.9 5.0 32 4.3 0.0 3.2 2 1 0 2 2 2 0 DASH complex subunit Dam1 TP_methylase PF00590.15 gi|452206291|ref|YP_007486413.1| - 0.6 9.7 3.7 0.48 10.0 0.1 2.0 1 1 1 2 2 2 0 Tetrapyrrole (Corrin/Porphyrin) Methylases TPR_MLP1_2 PF07926.7 gi|452206291|ref|YP_007486413.1| - 0.68 9.6 21.3 0.84 9.3 8.2 2.2 2 0 0 2 2 2 0 TPR/MLP1/MLP2-like protein FlxA PF14282.1 gi|452206291|ref|YP_007486413.1| - 0.69 9.8 27.2 0.16 11.9 10.2 2.3 2 0 0 2 2 2 0 FlxA-like protein Fmp27_WPPW PF10359.4 gi|452206291|ref|YP_007486413.1| - 0.76 8.1 13.7 0.17 10.2 5.0 2.0 2 0 0 2 2 2 0 RNA pol II promoter Fmp27 protein domain DUF4164 PF13747.1 gi|452206291|ref|YP_007486413.1| - 0.79 9.8 14.4 2.3 8.4 3.8 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4164) DUF3086 PF11285.3 gi|452206291|ref|YP_007486413.1| - 0.88 8.3 8.7 1.5 7.5 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3086) DUF2968 PF11180.3 gi|452206291|ref|YP_007486413.1| - 0.92 8.8 22.5 1.2 8.4 9.9 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2968) CorA PF01544.13 gi|452206291|ref|YP_007486413.1| - 0.96 8.4 7.6 0.24 10.3 1.1 2.0 2 0 0 2 2 2 0 CorA-like Mg2+ transporter protein Cortex-I_coil PF09304.5 gi|452206291|ref|YP_007486413.1| - 1 9.4 18.8 1.1 9.3 5.8 2.2 2 0 0 2 2 2 0 Cortexillin I, coiled coil DUF1664 PF07889.7 gi|452206291|ref|YP_007486413.1| - 1.1 9.1 12.6 4.1 7.2 0.5 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) Laminin_II PF06009.7 gi|452206291|ref|YP_007486413.1| - 1.1 9.0 12.2 0.86 9.3 0.7 2.4 1 1 0 2 2 2 0 Laminin Domain II HCMV_UL139 PF12507.3 gi|452206291|ref|YP_007486413.1| - 1.1 9.3 5.6 3.6 7.7 0.5 2.4 1 1 1 2 2 2 0 Human Cytomegalovirus UL139 protein Seryl_tRNA_N PF02403.17 gi|452206291|ref|YP_007486413.1| - 1.2 9.2 18.4 1.4 9.0 1.5 2.5 2 1 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain Lectin_N PF03954.9 gi|452206291|ref|YP_007486413.1| - 1.2 8.5 6.1 1.1 8.6 2.4 1.9 2 0 0 2 2 2 0 Hepatic lectin, N-terminal domain Baculo_PEP_C PF04513.7 gi|452206291|ref|YP_007486413.1| - 1.2 8.9 9.6 3.8 7.3 0.3 2.3 2 1 0 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus NPV_P10 PF05531.7 gi|452206291|ref|YP_007486413.1| - 1.2 9.4 16.2 5.2 7.4 1.5 2.7 2 1 0 2 2 2 0 Nucleopolyhedrovirus P10 protein Tektin PF03148.9 gi|452206291|ref|YP_007486413.1| - 1.2 7.5 15.6 1.5 7.3 4.3 2.2 2 0 0 2 2 2 0 Tektin family Nup54 PF13874.1 gi|452206291|ref|YP_007486413.1| - 1.4 8.5 14.7 2.7 7.6 0.1 2.1 2 0 0 2 2 2 0 Nucleoporin complex subunit 54 ADIP PF11559.3 gi|452206291|ref|YP_007486413.1| - 1.5 8.7 17.6 0.87 9.4 7.4 2.1 2 0 0 2 2 2 0 Afadin- and alpha -actinin-Binding DivIC PF04977.10 gi|452206291|ref|YP_007486413.1| - 1.5 8.3 27.0 0.32 10.5 2.9 3.3 2 1 1 3 3 2 0 Septum formation initiator PhoU PF01895.14 gi|452206291|ref|YP_007486413.1| - 1.5 9.2 8.8 3 8.3 2.8 2.2 2 0 0 2 2 2 0 PhoU domain zf-C4H2 PF10146.4 gi|452206291|ref|YP_007486413.1| - 1.8 8.5 11.9 3.8 7.4 0.5 2.0 2 0 0 2 2 2 0 Zinc finger-containing protein HAUS6_N PF14661.1 gi|452206291|ref|YP_007486413.1| - 2.5 7.4 14.3 3 7.1 0.2 2.0 2 0 0 2 2 2 0 HAUS augmin-like complex subunit 6 N-terminus bZIP_1 PF00170.16 gi|452206291|ref|YP_007486413.1| - 2.5 8.1 14.7 0.91 9.5 0.5 2.7 2 1 1 3 3 3 0 bZIP transcription factor Herpes_UL6 PF01763.11 gi|452206291|ref|YP_007486413.1| - 2.7 6.0 7.8 1.7 6.7 3.1 1.8 2 0 0 2 2 2 0 Herpesvirus UL6 like DUF3552 PF12072.3 gi|452206291|ref|YP_007486413.1| - 2.9 7.0 20.9 1.2 8.2 7.8 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF3552) SPX PF03105.14 gi|452206291|ref|YP_007486413.1| - 2.9 7.5 9.3 0.32 10.7 2.2 1.9 2 0 0 2 2 2 0 SPX domain ISG65-75 PF11727.3 gi|452206291|ref|YP_007486413.1| - 3 6.8 9.7 3.1 6.7 2.8 2.0 2 0 0 2 2 2 0 Invariant surface glycoprotein DUF4446 PF14584.1 gi|452206291|ref|YP_007486413.1| - 3.3 7.5 11.6 4.5 7.1 3.6 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF4446) FlaC_arch PF05377.6 gi|452206291|ref|YP_007486413.1| - 3.3 7.6 19.1 0.32 10.9 1.8 3.4 3 1 1 4 4 4 0 Flagella accessory protein C (FlaC) Cytochrom_C_2 PF01322.15 gi|452206291|ref|YP_007486413.1| - 3.4 8.2 10.5 0.88 10.1 2.9 2.1 1 1 0 2 2 2 0 Cytochrome C' Cluap1 PF10234.4 gi|452206291|ref|YP_007486413.1| - 3.4 6.7 14.2 2.6 7.1 4.7 2.1 2 0 0 2 2 2 0 Clusterin-associated protein-1 Peptidase_M16 PF00675.15 gi|452206291|ref|YP_007486413.1| - 3.5 7.3 6.8 4.5 7.0 0.8 2.2 2 0 0 2 2 2 0 Insulinase (Peptidase family M16) WD40_alt PF14077.1 gi|452206291|ref|YP_007486413.1| - 3.7 7.2 5.5 0.63 9.7 0.9 1.9 2 0 0 2 2 1 0 Alternative WD40 repeat motif YqaJ PF09588.5 gi|452206291|ref|YP_007486413.1| - 3.7 7.4 9.5 0.066 13.1 0.4 2.0 2 0 0 2 2 1 0 YqaJ-like viral recombinase domain DUF607 PF04678.8 gi|452206291|ref|YP_007486413.1| - 3.9 7.3 12.4 1.5 8.7 2.6 2.2 1 1 1 2 2 2 0 Protein of unknown function, DUF607 Spc7 PF08317.6 gi|452206291|ref|YP_007486413.1| - 4.9 5.7 16.7 2.2 6.8 1.1 2.1 2 0 0 2 2 2 0 Spc7 kinetochore protein Casc1 PF12366.3 gi|452206291|ref|YP_007486413.1| - 6 6.2 8.7 6.8 6.1 1.8 2.1 2 0 0 2 2 2 0 Cancer susceptibility candidate 1 DAGK_cat PF00781.19 gi|452206291|ref|YP_007486413.1| - 6.5 6.1 7.2 0.77 9.1 0.7 2.1 2 0 0 2 2 2 0 Diacylglycerol kinase catalytic domain FemAB PF02388.11 gi|452206291|ref|YP_007486413.1| - 6.7 5.2 10.3 14 4.2 4.3 2.0 2 0 0 2 2 2 0 FemAB family DUF1492 PF07374.6 gi|452206291|ref|YP_007486413.1| - 7.1 6.8 7.7 3 7.9 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1492) Viral_P18 PF04521.8 gi|452206291|ref|YP_007486413.1| - 7.2 6.0 8.4 23 4.4 3.7 2.5 2 1 0 2 2 2 0 ssRNA positive strand viral 18kD cysteine rich protein GrpE PF01025.14 gi|452206291|ref|YP_007486413.1| - 7.7 6.0 18.6 2.4 7.6 7.1 2.1 2 0 0 2 2 2 0 GrpE OmpH PF03938.9 gi|452206291|ref|YP_007486413.1| - 8.2 6.3 32.6 40 4.1 22.6 1.8 1 1 0 1 1 1 0 Outer membrane protein (OmpH-like) Ribosomal_L18ae PF01775.12 gi|452206292|ref|YP_007486414.1| - 1.3e-08 34.7 0.0 1.4e-08 34.7 0.0 1.0 1 0 0 1 1 1 1 Ribosomal L18ae/LX protein domain PAP2 PF01569.16 gi|452206293|ref|YP_007486415.1| - 3.6e-19 68.7 4.0 3.6e-19 68.7 2.7 2.6 3 0 0 3 3 3 1 PAP2 superfamily PAP2_3 PF14378.1 gi|452206293|ref|YP_007486415.1| - 2.1e-07 30.6 2.8 6.3e-07 29.1 1.9 1.8 1 0 0 1 1 1 1 PAP2 superfamily PAP2_C PF14360.1 gi|452206293|ref|YP_007486415.1| - 2.3 8.5 5.8 0.8 10.0 0.5 2.6 3 0 0 3 3 3 0 PAP2 superfamily C-terminal Maff2 PF12750.2 gi|452206293|ref|YP_007486415.1| - 6.4 6.3 10.0 0.48 9.9 0.1 3.5 2 1 1 3 3 3 0 Maff2 family Virul_fac_BrkB PF03631.10 gi|452206294|ref|YP_007486416.1| - 4.9e-40 137.5 30.1 4.9e-40 137.5 20.8 2.0 2 0 0 2 2 2 1 Virulence factor BrkB IncA PF04156.9 gi|452206294|ref|YP_007486416.1| - 0.43 10.1 0.0 0.43 10.1 0.0 3.5 4 0 0 4 4 4 0 IncA protein GHMP_kinases_N PF00288.21 gi|452206295|ref|YP_007486417.1| - 2.5e-11 43.4 1.1 6.8e-11 42.0 0.8 1.8 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|452206295|ref|YP_007486417.1| - 0.00025 21.1 1.7 0.00067 19.7 0.1 2.4 2 1 0 2 2 2 1 GHMP kinases C terminal MNHE PF01899.11 gi|452206296|ref|YP_007486418.1| - 2.6e-27 95.3 1.8 3.6e-27 94.9 1.3 1.2 1 0 0 1 1 1 1 Na+/H+ ion antiporter subunit MrpF_PhaF PF04066.8 gi|452206297|ref|YP_007486419.1| - 7.1e-19 67.8 6.5 7.1e-19 67.8 4.5 1.9 2 0 0 2 2 2 1 Multiple resistance and pH regulation protein F (MrpF / PhaF) DUF3488 PF11992.3 gi|452206297|ref|YP_007486419.1| - 0.053 12.1 4.2 0.057 12.0 2.9 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF3488) IspA PF04279.10 gi|452206297|ref|YP_007486419.1| - 0.11 12.5 4.6 0.13 12.2 3.2 1.1 1 0 0 1 1 1 0 Intracellular septation protein A Mem_trans PF03547.13 gi|452206297|ref|YP_007486419.1| - 0.29 9.3 3.3 0.31 9.2 2.3 1.0 1 0 0 1 1 1 0 Membrane transport protein RskA PF10099.4 gi|452206297|ref|YP_007486419.1| - 1.7 8.3 4.9 2.5 7.8 3.4 1.3 1 0 0 1 1 1 0 Anti-sigma-K factor rskA PhaG_MnhG_YufB PF03334.9 gi|452206298|ref|YP_007486420.1| - 3.1e-25 88.0 7.9 3.9e-25 87.7 5.5 1.2 1 0 0 1 1 1 1 Na+/H+ antiporter subunit DUF3185 PF11381.3 gi|452206298|ref|YP_007486420.1| - 0.051 13.3 4.2 0.092 12.5 2.9 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3185) PRA1 PF03208.14 gi|452206298|ref|YP_007486420.1| - 0.21 10.9 2.2 0.29 10.4 1.5 1.1 1 0 0 1 1 1 0 PRA1 family protein DUF4040 PF13244.1 gi|452206299|ref|YP_007486421.1| - 4e-19 68.3 13.3 4e-19 68.3 9.2 2.6 3 0 0 3 3 3 1 Domain of unknown function (DUF4040) zf-H2C2 PF09337.5 gi|452206299|ref|YP_007486421.1| - 0.11 11.9 0.0 0.42 10.0 0.0 1.9 2 0 0 2 2 2 0 His(2)-Cys(2) zinc finger DUF2108 PF09881.4 gi|452206299|ref|YP_007486421.1| - 2.3 8.0 16.6 0.12 12.1 7.6 1.8 2 0 0 2 2 2 0 Predicted membrane protein (DUF2108) MnhB PF04039.8 gi|452206300|ref|YP_007486422.1| - 4.3e-20 72.0 17.0 8.8e-20 71.0 11.7 1.5 1 1 0 1 1 1 1 Domain related to MnhB subunit of Na+/H+ antiporter Oxidored_q2 PF00420.19 gi|452206301|ref|YP_007486423.1| - 2.3e-23 81.6 4.2 3e-23 81.2 2.9 1.2 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CD47 PF04549.9 gi|452206301|ref|YP_007486423.1| - 0.54 10.2 6.2 0.068 13.1 0.8 1.8 2 0 0 2 2 2 0 CD47 transmembrane region Wzy_C PF04932.10 gi|452206301|ref|YP_007486423.1| - 4.6 7.0 7.8 11 5.7 5.4 1.7 1 1 0 1 1 1 0 O-Antigen ligase Oxidored_q1 PF00361.15 gi|452206302|ref|YP_007486424.1| - 2.9e-53 180.8 8.6 4.8e-53 180.1 6.0 1.4 1 0 0 1 1 1 1 NADH-Ubiquinone/plastoquinone (complex I), various chains NADHdeh_related PF10125.4 gi|452206302|ref|YP_007486424.1| - 0.00018 20.7 7.0 0.00018 20.7 4.8 2.6 2 1 0 2 2 2 1 NADH dehydrogenase I, subunit N related protein Oxidored_q1 PF00361.15 gi|452206303|ref|YP_007486425.1| - 6.4e-57 192.8 6.5 1.2e-56 191.9 4.5 1.5 1 0 0 1 1 1 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1_N PF00662.15 gi|452206303|ref|YP_007486425.1| - 0.0046 16.4 0.0 0.011 15.2 0.0 1.6 1 0 0 1 1 1 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Oxidored_q1 PF00361.15 gi|452206304|ref|YP_007486426.1| - 5.9e-39 133.9 7.5 1.5e-38 132.6 5.2 1.7 1 0 0 1 1 1 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Zn_Tnp_IS1595 PF12760.2 gi|452206305|ref|YP_007486427.1| - 0.2 11.4 1.5 9.2 6.1 0.1 2.1 2 0 0 2 2 2 0 Transposase zinc-ribbon domain DUF35_N PF12172.3 gi|452206305|ref|YP_007486427.1| - 0.47 10.4 2.7 1.3 8.9 0.3 2.1 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Zn-ribbon_8 PF09723.5 gi|452206305|ref|YP_007486427.1| - 0.74 9.8 2.8 1.8 8.6 1.9 1.6 1 1 0 1 1 1 0 Zinc ribbon domain RRN7 PF11781.3 gi|452206305|ref|YP_007486427.1| - 0.86 9.1 5.4 2.4 7.7 0.1 2.2 2 0 0 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 DEAD PF00270.24 gi|452206306|ref|YP_007486428.1| - 8.4e-25 87.1 0.0 1.4e-24 86.4 0.0 1.3 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|452206306|ref|YP_007486428.1| - 2.2e-11 43.4 0.1 7.6e-11 41.7 0.0 2.0 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|452206306|ref|YP_007486428.1| - 4.2e-08 33.2 0.0 1.6e-07 31.3 0.0 1.9 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit DnaJ_CXXCXGXG PF00684.14 gi|452206306|ref|YP_007486428.1| - 0.0075 16.2 0.3 0.016 15.2 0.2 1.5 1 0 0 1 1 1 1 DnaJ central domain SNF2_N PF00176.18 gi|452206306|ref|YP_007486428.1| - 0.072 11.8 0.0 0.096 11.4 0.0 1.3 1 0 0 1 1 1 0 SNF2 family N-terminal domain BofA PF07441.6 gi|452206307|ref|YP_007486429.1| - 1.6e-05 24.7 18.0 2.6e-05 24.1 12.4 1.4 1 0 0 1 1 1 1 SigmaK-factor processing regulatory protein BofA EutB PF06751.6 gi|452206307|ref|YP_007486429.1| - 0.029 12.7 0.6 0.043 12.1 0.4 1.2 1 0 0 1 1 1 0 Ethanolamine ammonia lyase large subunit (EutB) Spore_YtfJ PF09579.5 gi|452206307|ref|YP_007486429.1| - 0.1 12.4 2.5 0.2 11.5 1.7 1.7 1 0 0 1 1 1 0 Sporulation protein YtfJ (Spore_YtfJ) DUF1056 PF06341.6 gi|452206307|ref|YP_007486429.1| - 0.68 10.0 5.3 0.31 11.1 2.0 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF1056) DUF4191 PF13829.1 gi|452206307|ref|YP_007486429.1| - 0.81 8.7 4.6 0.98 8.4 3.2 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4191) Cm_res_leader PF08077.6 gi|452206307|ref|YP_007486429.1| - 3.2 7.6 4.9 4.3 7.2 0.2 3.4 3 0 0 3 3 3 0 Chloramphenicol resistance gene leader peptide HTH_24 PF13412.1 gi|452206308|ref|YP_007486430.1| - 0.003 16.9 0.0 0.0063 15.8 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_12 PF08461.5 gi|452206308|ref|YP_007486430.1| - 0.0058 16.3 0.1 0.011 15.3 0.0 1.6 1 1 0 1 1 1 1 Ribonuclease R winged-helix domain TrmB PF01978.14 gi|452206308|ref|YP_007486430.1| - 0.025 14.2 0.1 0.059 13.0 0.1 1.8 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB MotA_activ PF09114.5 gi|452206308|ref|YP_007486430.1| - 0.048 13.4 0.0 0.056 13.1 0.0 1.3 1 1 0 1 1 1 0 Transcription factor MotA, activation domain HTH_20 PF12840.2 gi|452206308|ref|YP_007486430.1| - 0.05 13.4 0.6 0.22 11.3 0.1 2.0 1 1 1 2 2 2 0 Helix-turn-helix domain HTH_5 PF01022.15 gi|452206308|ref|YP_007486430.1| - 0.051 13.2 0.7 0.45 10.2 0.5 2.1 1 1 1 2 2 2 0 Bacterial regulatory protein, arsR family Phage_rep_org_N PF09681.5 gi|452206308|ref|YP_007486430.1| - 0.053 13.0 0.0 0.087 12.3 0.0 1.4 1 1 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) Imm3 PF14425.1 gi|452206308|ref|YP_007486430.1| - 0.054 13.4 0.3 0.065 13.2 0.2 1.4 1 1 0 1 1 1 0 Immunity protein Imm3 HTH_15 PF12324.3 gi|452206308|ref|YP_007486430.1| - 0.12 11.9 0.0 0.21 11.2 0.0 1.4 1 1 0 1 1 1 0 Helix-turn-helix domain of alkylmercury lyase Adenylsucc_synt PF00709.16 gi|452206309|ref|YP_007486431.1| - 9.9e-142 472.5 0.0 1.1e-141 472.3 0.0 1.0 1 0 0 1 1 1 1 Adenylosuccinate synthetase MCPsignal PF00015.16 gi|452206310|ref|YP_007486432.1| - 3.2e-41 141.2 50.4 4.9e-40 137.3 19.9 3.4 3 1 1 4 4 3 2 Methyl-accepting chemotaxis protein (MCP) signalling domain PAS_9 PF13426.1 gi|452206310|ref|YP_007486432.1| - 7.8e-13 48.6 0.2 3.6e-12 46.5 0.0 2.3 2 0 0 2 2 1 1 PAS domain PAS PF00989.19 gi|452206310|ref|YP_007486432.1| - 2.8e-10 39.9 0.2 9.9e-10 38.2 0.0 2.0 2 0 0 2 2 1 1 PAS fold PAS_4 PF08448.5 gi|452206310|ref|YP_007486432.1| - 1.2e-09 38.1 1.3 1.2e-09 38.1 0.9 3.9 4 1 0 4 4 2 1 PAS fold APG17 PF04108.7 gi|452206310|ref|YP_007486432.1| - 3.8e-05 22.6 14.3 0.022 13.5 2.0 3.3 2 2 2 4 4 4 2 Autophagy protein Apg17 IFT57 PF10498.4 gi|452206310|ref|YP_007486432.1| - 0.00095 18.0 7.4 0.0089 14.8 0.3 2.6 2 1 0 2 2 2 1 Intra-flagellar transport protein 57 Ferritin PF00210.19 gi|452206310|ref|YP_007486432.1| - 0.0013 18.5 2.6 0.0013 18.5 1.8 3.1 3 1 0 3 3 3 1 Ferritin-like domain Laminin_II PF06009.7 gi|452206310|ref|YP_007486432.1| - 0.0035 17.0 25.1 0.32 10.7 1.9 4.3 2 2 2 4 4 4 3 Laminin Domain II Sec8_exocyst PF04048.9 gi|452206310|ref|YP_007486432.1| - 0.0048 16.5 4.4 0.75 9.4 0.6 2.7 2 0 0 2 2 2 2 Sec8 exocyst complex component specific domain PAS_8 PF13188.1 gi|452206310|ref|YP_007486432.1| - 0.0053 16.5 0.0 0.027 14.3 0.0 2.2 1 0 0 1 1 1 1 PAS domain DUF1993 PF09351.5 gi|452206310|ref|YP_007486432.1| - 0.0072 16.2 14.0 0.22 11.4 1.9 3.1 2 1 0 2 2 2 2 Domain of unknown function (DUF1993) NSP2_assoc PF14758.1 gi|452206310|ref|YP_007486432.1| - 0.0096 16.0 1.3 0.0096 16.0 0.9 3.1 3 1 0 4 4 3 1 Non-essential region of nsp2 of arterivirus polyprotein FlgN PF05130.7 gi|452206310|ref|YP_007486432.1| - 0.021 15.0 16.3 0.028 14.6 1.7 3.8 1 1 2 3 3 3 0 FlgN protein AAA_13 PF13166.1 gi|452206310|ref|YP_007486432.1| - 0.021 13.3 18.3 0.12 10.7 4.9 2.2 1 1 1 2 2 2 0 AAA domain BLOC1_2 PF10046.4 gi|452206310|ref|YP_007486432.1| - 0.038 14.1 18.4 1.7 8.8 0.6 4.6 3 2 1 4 4 4 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 LOH1CR12 PF10158.4 gi|452206310|ref|YP_007486432.1| - 0.042 13.6 4.8 17 5.2 0.3 3.7 1 1 1 3 3 3 0 Tumour suppressor protein DUF3450 PF11932.3 gi|452206310|ref|YP_007486432.1| - 0.072 12.3 16.8 0.29 10.3 2.8 3.0 2 1 1 3 3 3 0 Protein of unknown function (DUF3450) PAS_10 PF13596.1 gi|452206310|ref|YP_007486432.1| - 0.13 12.5 3.2 2.2 8.6 0.0 3.9 5 0 0 5 5 2 0 PAS domain DUF948 PF06103.6 gi|452206310|ref|YP_007486432.1| - 0.16 11.8 18.9 0.2 11.5 1.5 4.6 2 2 2 5 5 5 0 Bacterial protein of unknown function (DUF948) DUF2433 PF10360.4 gi|452206310|ref|YP_007486432.1| - 0.17 12.1 1.6 3.6 7.9 0.1 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2433) Snapin_Pallidin PF14712.1 gi|452206310|ref|YP_007486432.1| - 0.19 12.0 5.0 9.3 6.6 0.0 3.8 3 1 1 4 4 2 0 Snapin/Pallidin CorA PF01544.13 gi|452206310|ref|YP_007486432.1| - 0.26 10.3 12.5 0.73 8.8 1.5 2.9 1 1 2 3 3 3 0 CorA-like Mg2+ transporter protein Spc7 PF08317.6 gi|452206310|ref|YP_007486432.1| - 0.59 8.7 15.0 0.31 9.6 2.9 2.8 1 1 2 3 3 3 0 Spc7 kinetochore protein TMPIT PF07851.8 gi|452206310|ref|YP_007486432.1| - 0.8 8.7 5.5 3 6.8 0.3 2.4 2 0 0 2 2 2 0 TMPIT-like protein DASH_Dam1 PF08653.5 gi|452206310|ref|YP_007486432.1| - 0.83 9.4 5.0 8 6.3 0.0 4.1 3 2 2 5 5 5 0 DASH complex subunit Dam1 Sec20 PF03908.8 gi|452206310|ref|YP_007486432.1| - 0.98 9.1 5.6 1.1 8.9 0.6 2.8 2 0 0 2 2 2 0 Sec20 COG2 PF06148.6 gi|452206310|ref|YP_007486432.1| - 1.2 8.9 20.5 12 5.7 4.3 4.5 2 2 1 3 3 3 0 COG (conserved oligomeric Golgi) complex component, COG2 Reo_sigmaC PF04582.7 gi|452206310|ref|YP_007486432.1| - 1.6 7.8 17.6 2 7.4 3.6 2.5 1 1 0 2 2 2 0 Reovirus sigma C capsid protein T4SS PF07996.6 gi|452206310|ref|YP_007486432.1| - 1.7 8.4 11.9 0.96 9.2 0.7 3.3 1 1 3 4 4 4 0 Type IV secretion system proteins Z1 PF10593.4 gi|452206310|ref|YP_007486432.1| - 1.9 7.6 4.9 2 7.5 0.5 2.4 2 0 0 2 2 2 0 Z1 domain V_ATPase_I PF01496.14 gi|452206310|ref|YP_007486432.1| - 2 6.1 15.7 5.3 4.7 10.9 1.6 1 1 0 1 1 1 0 V-type ATPase 116kDa subunit family DUF1664 PF07889.7 gi|452206310|ref|YP_007486432.1| - 2 8.2 17.8 8.7 6.1 1.1 4.2 2 2 2 4 4 4 0 Protein of unknown function (DUF1664) Seryl_tRNA_N PF02403.17 gi|452206310|ref|YP_007486432.1| - 2.5 8.1 17.6 2.9 7.9 3.1 3.9 2 2 1 3 3 3 0 Seryl-tRNA synthetase N-terminal domain AATF-Che1 PF13339.1 gi|452206310|ref|YP_007486432.1| - 2.6 8.2 10.9 3.7 7.7 1.9 3.5 2 2 0 2 2 2 0 Apoptosis antagonizing transcription factor DUF651 PF04895.7 gi|452206310|ref|YP_007486432.1| - 3.4 7.3 6.4 4.1 7.0 0.4 3.7 3 2 2 5 5 5 0 Archaeal protein of unknown function (DUF651) IFT20 PF14931.1 gi|452206310|ref|YP_007486432.1| - 3.7 7.4 14.2 1.9 8.4 0.4 4.2 4 2 2 6 6 5 0 Intraflagellar transport complex B, subunit 20 Cytochrom_C_2 PF01322.15 gi|452206310|ref|YP_007486432.1| - 3.9 8.0 22.8 1.4 9.5 2.6 4.0 1 1 2 4 4 4 0 Cytochrome C' FH2 PF02181.18 gi|452206310|ref|YP_007486432.1| - 4 6.2 11.0 1.4 7.6 1.5 2.8 2 1 1 3 3 3 0 Formin Homology 2 Domain TPR_MLP1_2 PF07926.7 gi|452206310|ref|YP_007486432.1| - 6.5 6.5 19.5 3.1 7.5 2.1 3.9 2 2 1 3 3 3 0 TPR/MLP1/MLP2-like protein IncA PF04156.9 gi|452206310|ref|YP_007486432.1| - 6.7 6.2 16.3 2.3 7.7 3.5 2.6 1 1 1 2 2 2 0 IncA protein Baculo_PEP_C PF04513.7 gi|452206310|ref|YP_007486432.1| - 9 6.1 17.3 0.72 9.6 0.2 4.1 2 1 0 3 3 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus Nup54 PF13874.1 gi|452206310|ref|YP_007486432.1| - 9.1 5.9 9.8 2.8 7.5 0.5 3.5 2 2 1 3 3 3 0 Nucleoporin complex subunit 54 NUDIX PF00293.23 gi|452206311|ref|YP_007486433.1| - 3.6e-11 42.8 1.1 4.6e-11 42.4 0.7 1.2 1 0 0 1 1 1 1 NUDIX domain NUDIX_4 PF14815.1 gi|452206311|ref|YP_007486433.1| - 0.0063 15.9 0.2 0.013 14.9 0.1 1.6 1 1 0 1 1 1 1 NUDIX domain HTH_20 PF12840.2 gi|452206312|ref|YP_007486434.1| - 0.0011 18.7 0.2 0.0012 18.5 0.1 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain UPF0175 PF03683.8 gi|452206312|ref|YP_007486434.1| - 0.0012 18.2 0.0 0.0013 18.1 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0175) HTH_31 PF13560.1 gi|452206312|ref|YP_007486434.1| - 0.0026 17.9 0.1 0.0033 17.6 0.1 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|452206312|ref|YP_007486434.1| - 0.0067 16.0 0.1 0.0082 15.7 0.1 1.1 1 0 0 1 1 1 1 Homeodomain-like domain Sigma70_r4_2 PF08281.7 gi|452206312|ref|YP_007486434.1| - 0.0068 15.8 0.1 0.008 15.6 0.1 1.1 1 0 0 1 1 1 1 Sigma-70, region 4 MerR PF00376.18 gi|452206312|ref|YP_007486434.1| - 0.0098 15.4 0.0 0.013 15.0 0.0 1.3 1 0 0 1 1 1 1 MerR family regulatory protein HTH_29 PF13551.1 gi|452206312|ref|YP_007486434.1| - 0.021 14.9 0.1 0.026 14.6 0.1 1.1 1 0 0 1 1 1 0 Winged helix-turn helix HTH_17 PF12728.2 gi|452206312|ref|YP_007486434.1| - 0.041 14.1 0.0 0.058 13.6 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_IclR PF09339.5 gi|452206312|ref|YP_007486434.1| - 0.057 13.0 0.1 0.079 12.5 0.1 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain MmgE_PrpD PF03972.9 gi|452206313|ref|YP_007486435.1| - 1.3e-34 119.1 15.2 1.1e-32 112.8 10.5 2.2 1 1 0 1 1 1 1 MmgE/PrpD family FA_desaturase PF00487.19 gi|452206314|ref|YP_007486436.1| - 0.052 12.9 0.6 0.061 12.7 0.4 1.0 1 0 0 1 1 1 0 Fatty acid desaturase DUF2975 PF11188.3 gi|452206314|ref|YP_007486436.1| - 0.33 10.6 1.9 0.39 10.4 1.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2975) DUF4190 PF13828.1 gi|452206314|ref|YP_007486436.1| - 1.1 8.8 4.3 0.84 9.2 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4190) ADH_zinc_N PF00107.21 gi|452206315|ref|YP_007486437.1| - 1e-39 135.0 0.2 5.2e-39 132.7 0.1 1.9 2 0 0 2 2 2 1 Zinc-binding dehydrogenase ADH_N PF08240.7 gi|452206315|ref|YP_007486437.1| - 1.9e-29 101.6 0.2 3.5e-29 100.7 0.2 1.5 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N_2 PF13602.1 gi|452206315|ref|YP_007486437.1| - 4.6e-19 69.5 0.0 7.6e-19 68.8 0.0 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase NAD_binding_10 PF13460.1 gi|452206315|ref|YP_007486437.1| - 3.8e-06 27.0 0.1 5.3e-06 26.5 0.0 1.4 1 0 0 1 1 1 1 NADH(P)-binding DapB_N PF01113.15 gi|452206315|ref|YP_007486437.1| - 0.00052 19.9 0.2 0.001 19.0 0.1 1.4 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Semialdhyde_dh PF01118.19 gi|452206315|ref|YP_007486437.1| - 0.0051 17.1 0.1 0.0085 16.3 0.1 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain adh_short PF00106.20 gi|452206315|ref|YP_007486437.1| - 0.0098 15.8 0.5 0.019 14.8 0.3 1.5 1 0 0 1 1 1 1 short chain dehydrogenase RmlD_sub_bind PF04321.12 gi|452206315|ref|YP_007486437.1| - 0.011 14.6 0.1 0.071 11.9 0.0 1.9 1 1 1 2 2 2 0 RmlD substrate binding domain Eno-Rase_NADH_b PF12242.3 gi|452206315|ref|YP_007486437.1| - 0.013 15.2 0.1 0.038 13.7 0.0 1.8 1 0 0 1 1 1 0 NAD(P)H binding domain of trans-2-enoyl-CoA reductase NmrA PF05368.8 gi|452206315|ref|YP_007486437.1| - 0.015 14.5 0.0 0.065 12.4 0.0 1.8 2 0 0 2 2 2 0 NmrA-like family Epimerase PF01370.16 gi|452206315|ref|YP_007486437.1| - 0.021 14.2 0.0 0.029 13.8 0.0 1.3 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family 3HCDH_N PF02737.13 gi|452206315|ref|YP_007486437.1| - 0.035 13.7 0.1 0.054 13.1 0.1 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain XdhC_C PF13478.1 gi|452206315|ref|YP_007486437.1| - 0.11 12.8 0.0 0.17 12.1 0.0 1.3 1 0 0 1 1 1 0 XdhC Rossmann domain MoCF_biosynth PF00994.19 gi|452206316|ref|YP_007486438.1| - 3.5e-32 110.7 0.6 4.8e-32 110.3 0.4 1.1 1 0 0 1 1 1 1 Probable molybdopterin binding domain Cupin_2 PF07883.6 gi|452206317|ref|YP_007486439.1| - 1.4e-11 43.6 0.5 1.8e-11 43.3 0.4 1.1 1 0 0 1 1 1 1 Cupin domain Cupin_1 PF00190.17 gi|452206317|ref|YP_007486439.1| - 0.017 14.5 0.0 0.022 14.2 0.0 1.2 1 0 0 1 1 1 0 Cupin MannoseP_isomer PF01050.13 gi|452206317|ref|YP_007486439.1| - 0.047 13.3 0.0 0.056 13.0 0.0 1.0 1 0 0 1 1 1 0 Mannose-6-phosphate isomerase Cupin_7 PF12973.2 gi|452206317|ref|YP_007486439.1| - 0.067 13.0 0.0 0.082 12.7 0.0 1.3 1 0 0 1 1 1 0 ChrR Cupin-like domain AraC_binding PF02311.14 gi|452206317|ref|YP_007486439.1| - 0.085 12.5 0.0 0.1 12.3 0.0 1.1 1 0 0 1 1 1 0 AraC-like ligand binding domain CSD PF00313.17 gi|452206319|ref|YP_007486441.1| - 1e-20 73.2 0.1 1.1e-20 73.0 0.1 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain S1-like PF14444.1 gi|452206319|ref|YP_007486441.1| - 0.011 15.4 4.0 0.024 14.3 2.8 1.6 1 1 0 1 1 1 0 S1-like CusF_Ec PF11604.3 gi|452206319|ref|YP_007486441.1| - 0.035 13.9 0.0 0.044 13.6 0.0 1.3 1 0 0 1 1 1 0 Copper binding periplasmic protein CusF OB_RNB PF08206.6 gi|452206319|ref|YP_007486441.1| - 0.059 12.8 2.6 0.084 12.3 1.8 1.3 1 0 0 1 1 1 0 Ribonuclease B OB domain Pro_CA PF00484.14 gi|452206320|ref|YP_007486442.1| - 2.9e-22 79.3 0.0 4e-22 78.8 0.0 1.1 1 0 0 1 1 1 1 Carbonic anhydrase DUF2562 PF10814.3 gi|452206320|ref|YP_007486442.1| - 0.087 12.7 0.2 0.15 12.0 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2562) Phospho_p8 PF10195.4 gi|452206321|ref|YP_007486443.1| - 0.16 11.8 0.9 0.22 11.4 0.6 1.3 1 0 0 1 1 1 0 DNA-binding nuclear phosphoprotein p8 HLH PF00010.21 gi|452206321|ref|YP_007486443.1| - 0.32 10.7 2.1 0.46 10.2 1.4 1.3 1 0 0 1 1 1 0 Helix-loop-helix DNA-binding domain DUF3886 PF13025.1 gi|452206321|ref|YP_007486443.1| - 5.5 7.0 8.6 9.3 6.3 6.0 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3886) GST_N_2 PF13409.1 gi|452206322|ref|YP_007486444.1| - 8.9e-21 73.6 0.2 2.8e-20 72.0 0.0 1.8 2 0 0 2 2 2 1 Glutathione S-transferase, N-terminal domain GST_C_2 PF13410.1 gi|452206322|ref|YP_007486444.1| - 6.9e-12 45.0 0.2 1.4e-11 44.0 0.1 1.5 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_C PF00043.20 gi|452206322|ref|YP_007486444.1| - 8.8e-09 35.2 0.1 2e-08 34.1 0.1 1.6 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_C_3 PF14497.1 gi|452206322|ref|YP_007486444.1| - 3e-08 34.0 0.1 1.4e-07 31.9 0.1 2.1 1 1 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_N_3 PF13417.1 gi|452206322|ref|YP_007486444.1| - 6.6e-06 26.2 0.1 0.00022 21.3 0.0 2.4 1 1 0 1 1 1 1 Glutathione S-transferase, N-terminal domain ABC_tran PF00005.22 gi|452206323|ref|YP_007486445.1| - 1.2e-29 103.3 0.0 1.8e-29 102.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|452206323|ref|YP_007486445.1| - 5.1e-17 61.9 0.2 9.8e-17 61.0 0.1 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|452206323|ref|YP_007486445.1| - 4.5e-07 30.1 0.0 8.4e-05 22.6 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|452206323|ref|YP_007486445.1| - 0.0053 16.8 0.1 0.026 14.6 0.1 2.0 1 1 0 1 1 1 1 AAA domain ATP-synt_ab PF00006.20 gi|452206323|ref|YP_007486445.1| - 0.0074 15.8 0.0 0.0074 15.8 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain AAA_29 PF13555.1 gi|452206323|ref|YP_007486445.1| - 0.024 14.1 0.1 0.043 13.3 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_25 PF13481.1 gi|452206323|ref|YP_007486445.1| - 0.084 12.2 0.2 0.33 10.3 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.1 gi|452206323|ref|YP_007486445.1| - 0.11 12.4 0.8 0.26 11.2 0.1 1.9 2 0 0 2 2 2 0 AAA ATPase domain AAA_10 PF12846.2 gi|452206323|ref|YP_007486445.1| - 0.14 11.5 0.0 0.48 9.7 0.0 1.7 2 1 0 2 2 2 0 AAA-like domain NB-ARC PF00931.17 gi|452206323|ref|YP_007486445.1| - 0.15 10.8 0.0 0.24 10.2 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain RNA_helicase PF00910.17 gi|452206323|ref|YP_007486445.1| - 0.24 11.5 0.1 0.4 10.8 0.0 1.4 1 0 0 1 1 1 0 RNA helicase DUF3265 PF11665.3 gi|452206323|ref|YP_007486445.1| - 0.29 11.0 1.5 2.4 8.0 0.2 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3265) ABC_tran PF00005.22 gi|452206324|ref|YP_007486446.1| - 2.5e-24 86.1 0.0 3.3e-24 85.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|452206324|ref|YP_007486446.1| - 5.4e-18 65.0 0.6 1.1e-17 64.1 0.4 1.6 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|452206324|ref|YP_007486446.1| - 8.4e-09 35.8 0.0 5.8e-07 29.7 0.0 2.1 2 0 0 2 2 2 1 AAA domain SMC_N PF02463.14 gi|452206324|ref|YP_007486446.1| - 9.9e-07 28.2 0.0 1.5e-06 27.6 0.0 1.2 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|452206324|ref|YP_007486446.1| - 0.00035 20.6 0.3 0.00065 19.7 0.2 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|452206324|ref|YP_007486446.1| - 0.0056 16.8 0.2 0.036 14.2 0.2 2.0 1 1 0 1 1 1 1 AAA domain AAA_5 PF07728.9 gi|452206324|ref|YP_007486446.1| - 0.02 14.6 0.1 0.041 13.5 0.0 1.5 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_29 PF13555.1 gi|452206324|ref|YP_007486446.1| - 0.021 14.3 0.0 0.04 13.4 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain ATP-synt_ab PF00006.20 gi|452206324|ref|YP_007486446.1| - 0.037 13.5 0.0 0.073 12.5 0.0 1.5 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_25 PF13481.1 gi|452206324|ref|YP_007486446.1| - 0.038 13.3 0.1 0.63 9.3 0.0 2.2 2 0 0 2 2 2 0 AAA domain Sigma54_activat PF00158.21 gi|452206324|ref|YP_007486446.1| - 0.043 13.2 0.1 1 8.8 0.0 2.1 2 0 0 2 2 2 0 Sigma-54 interaction domain DUF258 PF03193.11 gi|452206324|ref|YP_007486446.1| - 0.043 12.9 0.2 1.9 7.6 0.1 2.3 1 1 1 2 2 2 0 Protein of unknown function, DUF258 AAA_19 PF13245.1 gi|452206324|ref|YP_007486446.1| - 0.057 13.1 0.1 0.61 9.8 0.0 2.4 2 0 0 2 2 2 0 Part of AAA domain NACHT PF05729.7 gi|452206324|ref|YP_007486446.1| - 0.076 12.6 0.0 0.15 11.7 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_15 PF13175.1 gi|452206324|ref|YP_007486446.1| - 0.26 10.2 0.0 1 8.3 0.0 1.7 2 0 0 2 2 2 0 AAA ATPase domain BPD_transp_1 PF00528.17 gi|452206325|ref|YP_007486447.1| - 1.3e-28 99.7 12.2 1.3e-28 99.7 8.5 2.0 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|452206325|ref|YP_007486447.1| - 5.9e-07 28.7 0.0 5.9e-07 28.7 0.0 2.6 3 0 0 3 3 3 1 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.17 gi|452206326|ref|YP_007486448.1| - 1.6e-25 89.7 14.1 1.6e-25 89.7 9.7 2.0 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_5 PF00496.17 gi|452206327|ref|YP_007486449.1| - 3.8e-44 151.0 0.2 4.9e-44 150.6 0.2 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle DehI PF10778.4 gi|452206328|ref|YP_007486450.1| - 4.6e-21 74.9 0.0 1.5e-10 40.8 0.0 2.6 2 1 1 3 3 3 2 Halocarboxylic acid dehydrogenase DehI DUF4398 PF14346.1 gi|452206329|ref|YP_007486451.1| - 0.11 12.5 0.6 0.16 12.0 0.1 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4398) Methyltransf_11 PF08241.7 gi|452206330|ref|YP_007486452.1| - 8.8e-17 61.3 0.0 1.3e-16 60.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|452206330|ref|YP_007486452.1| - 2.3e-12 47.1 0.0 3.4e-12 46.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|452206330|ref|YP_007486452.1| - 3.6e-11 43.0 0.0 4.9e-11 42.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|452206330|ref|YP_007486452.1| - 5e-09 35.9 0.0 6.4e-09 35.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|452206330|ref|YP_007486452.1| - 2.7e-08 34.3 0.0 4e-08 33.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|452206330|ref|YP_007486452.1| - 2.2e-07 31.2 0.0 3.5e-07 30.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|452206330|ref|YP_007486452.1| - 2e-06 27.8 0.3 3.8e-06 26.9 0.2 1.5 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|452206330|ref|YP_007486452.1| - 7.2e-05 22.0 0.0 0.00014 21.0 0.0 1.5 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family CMAS PF02353.15 gi|452206330|ref|YP_007486452.1| - 0.018 14.1 0.0 0.032 13.3 0.0 1.3 1 1 0 1 1 1 0 Mycolic acid cyclopropane synthetase MTS PF05175.9 gi|452206330|ref|YP_007486452.1| - 0.019 14.3 0.0 0.04 13.2 0.0 1.5 1 1 0 1 1 1 0 Methyltransferase small domain MetW PF07021.7 gi|452206330|ref|YP_007486452.1| - 0.12 11.7 0.0 0.13 11.5 0.0 1.2 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW Arginase PF00491.16 gi|452206331|ref|YP_007486453.1| - 1.8e-73 247.2 0.4 2.3e-73 246.9 0.2 1.0 1 0 0 1 1 1 1 Arginase family HTH_20 PF12840.2 gi|452206332|ref|YP_007486454.1| - 4.8e-14 51.8 0.0 7.5e-14 51.2 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|452206332|ref|YP_007486454.1| - 7.1e-07 28.5 0.0 9.9e-07 28.0 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|452206332|ref|YP_007486454.1| - 0.00011 21.7 0.0 0.00017 21.2 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|452206332|ref|YP_007486454.1| - 0.0017 17.9 0.0 0.0026 17.3 0.0 1.3 1 0 0 1 1 1 1 MarR family FaeA PF04703.7 gi|452206332|ref|YP_007486454.1| - 0.011 15.9 0.0 0.015 15.4 0.0 1.2 1 0 0 1 1 1 0 FaeA-like protein MarR PF01047.17 gi|452206332|ref|YP_007486454.1| - 0.017 14.7 0.0 0.033 13.8 0.0 1.4 1 0 0 1 1 1 0 MarR family HTH_45 PF14947.1 gi|452206332|ref|YP_007486454.1| - 0.025 14.3 0.0 0.031 14.1 0.0 1.1 1 0 0 1 1 1 0 Winged helix-turn-helix TrmB PF01978.14 gi|452206332|ref|YP_007486454.1| - 0.059 13.0 0.0 0.13 12.0 0.0 1.7 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_34 PF13601.1 gi|452206332|ref|YP_007486454.1| - 0.14 12.1 0.0 0.22 11.6 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain Sensor PF13796.1 gi|452206333|ref|YP_007486455.1| - 7.8e-31 107.0 34.0 9.2e-31 106.8 23.6 1.0 1 0 0 1 1 1 1 Putative sensor YesK PF14150.1 gi|452206334|ref|YP_007486456.1| - 9.5e-06 25.6 0.3 1.4e-05 25.0 0.2 1.3 1 1 0 1 1 1 1 YesK-like protein 5TM-5TMR_LYT PF07694.7 gi|452206334|ref|YP_007486456.1| - 0.01 15.1 0.4 0.015 14.6 0.3 1.3 1 1 0 1 1 1 0 5TMR of 5TMR-LYT MFS_1 PF07690.11 gi|452206334|ref|YP_007486456.1| - 0.033 12.9 2.8 0.037 12.7 2.0 1.0 1 0 0 1 1 1 0 Major Facilitator Superfamily DUF3816 PF12822.2 gi|452206334|ref|YP_007486456.1| - 0.04 13.8 0.6 0.05 13.4 0.4 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3816) TauE PF01925.14 gi|452206334|ref|YP_007486456.1| - 0.16 11.4 3.9 0.2 11.0 2.7 1.2 1 0 0 1 1 1 0 Sulfite exporter TauE/SafE YqhR PF11085.3 gi|452206334|ref|YP_007486456.1| - 0.17 11.3 0.9 0.23 11.0 0.6 1.2 1 0 0 1 1 1 0 Conserved membrane protein YqhR Oxidored_q2 PF00420.19 gi|452206334|ref|YP_007486456.1| - 0.21 11.1 4.3 4.5 6.9 0.7 2.1 1 1 1 2 2 2 0 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L PetG PF02529.10 gi|452206334|ref|YP_007486456.1| - 0.22 11.0 1.2 0.31 10.5 0.1 1.8 2 0 0 2 2 2 0 Cytochrome B6-F complex subunit 5 YtpI PF14007.1 gi|452206334|ref|YP_007486456.1| - 0.35 10.8 0.2 0.35 10.8 0.1 2.1 1 1 1 2 2 2 0 YtpI-like protein Bax1-I PF01027.15 gi|452206334|ref|YP_007486456.1| - 0.36 10.4 3.3 0.4 10.2 2.3 1.1 1 0 0 1 1 1 0 Inhibitor of apoptosis-promoting Bax1 SNARE_assoc PF09335.6 gi|452206334|ref|YP_007486456.1| - 0.4 10.8 3.4 1.3 9.2 2.4 1.9 1 1 0 1 1 1 0 SNARE associated Golgi protein CybS PF05328.7 gi|452206334|ref|YP_007486456.1| - 0.86 9.2 2.9 0.26 10.9 0.3 1.4 2 0 0 2 2 2 0 CybS NfeD PF01957.13 gi|452206334|ref|YP_007486456.1| - 0.88 9.6 3.2 0.74 9.9 0.1 1.9 1 1 1 2 2 2 0 NfeD-like C-terminal, partner-binding Polysacc_synt_C PF14667.1 gi|452206334|ref|YP_007486456.1| - 1.5 8.6 5.8 1.6 8.5 4.0 1.1 1 0 0 1 1 1 0 Polysaccharide biosynthesis C-terminal domain DUF4231 PF14015.1 gi|452206334|ref|YP_007486456.1| - 2.6 8.0 7.5 3.2 7.7 0.5 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF4231) Cyt_c_ox_IV PF12270.3 gi|452206335|ref|YP_007486457.1| - 0.49 10.1 2.5 3.3 7.4 0.1 2.2 1 1 1 2 2 2 0 Cytochrome c oxidase subunit IV DUF4131 PF13567.1 gi|452206335|ref|YP_007486457.1| - 0.98 8.8 3.8 1.2 8.5 2.6 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4131) DUF3068 PF11271.3 gi|452206335|ref|YP_007486457.1| - 5.5 5.9 10.0 0.083 11.9 0.8 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3068) UPF0197 PF05251.7 gi|452206335|ref|YP_007486457.1| - 8.1 6.8 8.5 5.7 7.3 0.8 2.4 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0197) HTH_20 PF12840.2 gi|452206336|ref|YP_007486458.1| - 1.5e-06 27.8 0.1 2.7e-06 27.0 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|452206336|ref|YP_007486458.1| - 0.00069 19.2 0.0 0.0014 18.2 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|452206336|ref|YP_007486458.1| - 0.00073 18.8 0.0 0.0012 18.1 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|452206336|ref|YP_007486458.1| - 0.0044 16.5 0.2 0.0081 15.6 0.1 1.6 1 1 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_IclR PF09339.5 gi|452206336|ref|YP_007486458.1| - 0.0054 16.2 0.0 0.01 15.3 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.14 gi|452206336|ref|YP_007486458.1| - 0.0063 16.1 0.0 0.013 15.2 0.0 1.5 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB PadR PF03551.9 gi|452206336|ref|YP_007486458.1| - 0.017 14.9 0.0 0.027 14.2 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family MarR PF01047.17 gi|452206336|ref|YP_007486458.1| - 0.022 14.4 0.0 0.036 13.7 0.0 1.3 1 0 0 1 1 1 0 MarR family HTH_27 PF13463.1 gi|452206336|ref|YP_007486458.1| - 0.037 14.3 0.0 0.054 13.8 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain Fe_dep_repress PF01325.14 gi|452206336|ref|YP_007486458.1| - 0.061 13.2 0.0 0.1 12.5 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain Sensor PF13796.1 gi|452206337|ref|YP_007486459.1| - 1.6e-33 115.7 35.2 4.5e-33 114.3 24.4 1.6 1 1 0 1 1 1 1 Putative sensor DUF162 PF02589.10 gi|452206338|ref|YP_007486460.1| - 1.1e-22 80.5 0.6 1.5e-22 80.0 0.4 1.3 1 1 0 1 1 1 1 Uncharacterised ACR, YkgG family COG1556 DUF162 PF02589.10 gi|452206339|ref|YP_007486461.1| - 3.7e-42 143.9 0.7 6.1e-42 143.2 0.5 1.4 1 0 0 1 1 1 1 Uncharacterised ACR, YkgG family COG1556 Fer4_8 PF13183.1 gi|452206339|ref|YP_007486461.1| - 5.6e-09 35.8 4.6 1.2e-08 34.8 3.2 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|452206339|ref|YP_007486461.1| - 3.7e-08 33.6 7.1 2.9e-06 27.5 0.6 2.9 3 0 0 3 3 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|452206339|ref|YP_007486461.1| - 1e-07 31.6 2.7 0.00029 20.5 0.2 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|452206339|ref|YP_007486461.1| - 1.7e-07 31.4 2.9 3.5e-07 30.4 2.0 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|452206339|ref|YP_007486461.1| - 2.9e-06 27.5 6.9 7.9e-06 26.1 4.8 1.8 1 0 0 1 1 1 1 4Fe-4S dicluster domain CCG PF02754.11 gi|452206339|ref|YP_007486461.1| - 6.8e-05 22.7 0.6 0.00076 19.4 0.2 2.9 3 0 0 3 3 3 1 Cysteine-rich domain Fer4_9 PF13187.1 gi|452206339|ref|YP_007486461.1| - 7.9e-05 22.8 9.5 0.00058 20.0 6.7 2.3 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|452206339|ref|YP_007486461.1| - 0.00013 21.3 3.8 0.00013 21.3 2.6 2.5 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_6 PF12837.2 gi|452206339|ref|YP_007486461.1| - 0.00017 21.3 12.9 0.00049 19.8 2.1 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|452206339|ref|YP_007486461.1| - 0.00036 20.2 12.2 0.003 17.3 2.4 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|452206339|ref|YP_007486461.1| - 0.00045 20.0 11.1 0.0029 17.4 7.7 2.1 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_20 PF14691.1 gi|452206339|ref|YP_007486461.1| - 0.0038 16.8 1.9 0.019 14.5 0.1 2.3 2 0 0 2 2 2 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_3 PF12798.2 gi|452206339|ref|YP_007486461.1| - 0.0049 17.3 6.0 0.0049 17.3 4.2 2.5 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_4 PF12800.2 gi|452206339|ref|YP_007486461.1| - 0.042 14.1 15.4 0.089 13.1 3.2 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_16 PF13484.1 gi|452206339|ref|YP_007486461.1| - 1 10.1 12.3 0.56 10.9 2.3 2.3 1 1 1 2 2 2 0 4Fe-4S double cluster binding domain Fer4_15 PF13459.1 gi|452206339|ref|YP_007486461.1| - 2.3 8.8 12.2 0.13 12.8 0.3 3.7 3 0 0 3 3 3 0 4Fe-4S single cluster domain Acetyltransf_1 PF00583.19 gi|452206340|ref|YP_007486462.1| - 7.6e-14 51.5 0.2 1.2e-13 50.9 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|452206340|ref|YP_007486462.1| - 5.5e-10 39.2 0.0 8e-10 38.7 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|452206340|ref|YP_007486462.1| - 2.2e-09 37.5 0.0 2.7e-09 37.2 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|452206340|ref|YP_007486462.1| - 2.3e-09 37.3 0.0 3.1e-09 36.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|452206340|ref|YP_007486462.1| - 0.0001 22.1 0.0 0.0014 18.5 0.0 2.2 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.1 gi|452206340|ref|YP_007486462.1| - 0.0017 18.3 0.2 0.0024 17.8 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|452206340|ref|YP_007486462.1| - 0.0036 17.2 0.0 0.0051 16.7 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|452206340|ref|YP_007486462.1| - 0.016 15.0 0.1 0.025 14.4 0.0 1.6 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|452206340|ref|YP_007486462.1| - 0.11 12.3 0.0 0.18 11.7 0.0 1.3 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase PMSR PF01625.16 gi|452206341|ref|YP_007486463.1| - 4e-39 134.0 0.0 4.9e-39 133.6 0.0 1.1 1 0 0 1 1 1 1 Peptide methionine sulfoxide reductase AHH PF14412.1 gi|452206341|ref|YP_007486463.1| - 0.099 12.6 0.0 0.17 11.8 0.0 1.3 1 0 0 1 1 1 0 A nuclease family of the HNH/ENDO VII superfamily with conserved AHH PCMT PF01135.14 gi|452206342|ref|YP_007486464.1| - 2.3e-37 128.5 0.0 3.1e-37 128.1 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_18 PF12847.2 gi|452206342|ref|YP_007486464.1| - 1.2e-08 35.5 0.2 3.7e-08 33.9 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|452206342|ref|YP_007486464.1| - 1.3e-05 24.8 0.0 1.8e-05 24.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|452206342|ref|YP_007486464.1| - 1.4e-05 25.0 1.3 6.8e-05 22.8 0.8 2.0 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|452206342|ref|YP_007486464.1| - 5.9e-05 22.5 0.0 0.00014 21.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_12 PF08242.7 gi|452206342|ref|YP_007486464.1| - 0.0015 18.9 0.1 0.0046 17.3 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|452206342|ref|YP_007486464.1| - 0.0042 17.5 0.0 0.0087 16.5 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain ACP_syn_III_C PF08541.5 gi|452206342|ref|YP_007486464.1| - 0.03 14.3 0.0 0.073 13.0 0.0 1.6 1 0 0 1 1 1 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Methyltransf_23 PF13489.1 gi|452206342|ref|YP_007486464.1| - 0.044 13.5 0.0 0.073 12.7 0.0 1.5 1 1 0 1 1 1 0 Methyltransferase domain RrnaAD PF00398.15 gi|452206342|ref|YP_007486464.1| - 0.095 11.7 0.0 0.14 11.1 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase PCMT PF01135.14 gi|452206343|ref|YP_007486465.1| - 6.6e-60 202.2 0.0 7.9e-60 201.9 0.0 1.0 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_18 PF12847.2 gi|452206343|ref|YP_007486465.1| - 2.9e-08 34.2 0.0 5.1e-08 33.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|452206343|ref|YP_007486465.1| - 6.5e-08 32.6 0.2 1.4e-07 31.5 0.1 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|452206343|ref|YP_007486465.1| - 5.4e-06 26.0 0.0 6.9e-06 25.7 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.15 gi|452206343|ref|YP_007486465.1| - 0.031 13.3 0.0 0.041 12.9 0.0 1.1 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase MTS PF05175.9 gi|452206343|ref|YP_007486465.1| - 0.038 13.3 0.0 0.057 12.7 0.0 1.1 1 0 0 1 1 1 0 Methyltransferase small domain RrnaAD PF00398.15 gi|452206343|ref|YP_007486465.1| - 0.04 12.9 0.0 0.06 12.3 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Methyltransf_11 PF08241.7 gi|452206343|ref|YP_007486465.1| - 0.045 14.2 0.0 0.072 13.5 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain DUF938 PF06080.7 gi|452206343|ref|YP_007486465.1| - 0.077 12.5 0.0 0.11 12.0 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF938) zinc_ribbon_4 PF13717.1 gi|452206344|ref|YP_007486466.1| - 0.00068 19.2 2.9 0.0024 17.4 1.8 2.0 1 1 1 2 2 2 2 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|452206344|ref|YP_007486466.1| - 0.0008 18.9 3.5 0.003 17.1 2.3 2.0 1 1 1 2 2 2 2 zinc-ribbon domain DUF2387 PF09526.5 gi|452206344|ref|YP_007486466.1| - 0.012 15.5 1.2 0.022 14.6 0.8 1.4 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) Lar_restr_allev PF14354.1 gi|452206344|ref|YP_007486466.1| - 0.013 15.8 0.8 0.032 14.5 0.6 1.7 1 0 0 1 1 1 0 Restriction alleviation protein Lar DAP_epimerase PF01678.14 gi|452206344|ref|YP_007486466.1| - 0.053 13.4 0.7 0.1 12.5 0.5 1.6 1 0 0 1 1 1 0 Diaminopimelate epimerase DNA_RNApol_7kD PF03604.8 gi|452206344|ref|YP_007486466.1| - 2 7.9 5.7 2.3 7.7 0.6 2.4 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zf-DNL PF05180.7 gi|452206344|ref|YP_007486466.1| - 3.8 7.3 6.2 9.6 6.0 1.2 2.3 1 1 1 2 2 2 0 DNL zinc finger UPF0547 PF10571.4 gi|452206344|ref|YP_007486466.1| - 6.7 6.5 6.1 7.3 6.3 0.7 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Peptidase_M29 PF02073.10 gi|452206345|ref|YP_007486467.1| - 8.5e-18 64.2 0.1 1.6e-15 56.8 0.0 2.3 2 0 0 2 2 2 2 Thermophilic metalloprotease (M29) Gp_dh_C PF02800.15 gi|452206346|ref|YP_007486468.1| - 1.6e-14 53.6 0.0 2.3e-14 53.1 0.0 1.3 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Gp_dh_N PF00044.19 gi|452206346|ref|YP_007486468.1| - 2.5e-14 53.4 0.1 8.1e-14 51.8 0.0 1.9 2 1 0 2 2 2 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DapB_N PF01113.15 gi|452206346|ref|YP_007486468.1| - 5.1e-07 29.6 0.1 1.6e-06 28.0 0.0 1.8 2 0 0 2 2 2 1 Dihydrodipicolinate reductase, N-terminus NAD_binding_3 PF03447.11 gi|452206346|ref|YP_007486468.1| - 0.0072 16.7 0.1 0.036 14.4 0.1 2.1 2 0 0 2 2 2 1 Homoserine dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.17 gi|452206346|ref|YP_007486468.1| - 0.0081 16.6 0.1 0.018 15.5 0.1 1.6 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold 2-Hacid_dh_C PF02826.14 gi|452206346|ref|YP_007486468.1| - 0.03 13.4 0.0 0.087 11.9 0.0 1.8 1 1 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TrkA_N PF02254.13 gi|452206347|ref|YP_007486469.1| - 6e-32 110.0 14.9 2.7e-19 69.2 3.3 3.4 3 0 0 3 3 3 2 TrkA-N domain TrkA_C PF02080.16 gi|452206347|ref|YP_007486469.1| - 9e-17 60.4 7.1 2.2e-08 33.5 0.0 4.2 4 0 0 4 4 4 2 TrkA-C domain MARVEL PF01284.18 gi|452206347|ref|YP_007486469.1| - 0.082 12.7 0.6 0.16 11.8 0.4 1.4 1 0 0 1 1 1 0 Membrane-associating domain HSP20 PF00011.16 gi|452206348|ref|YP_007486470.1| - 7.8e-10 38.5 0.0 3.7e-08 33.1 0.0 2.1 1 1 0 1 1 1 1 Hsp20/alpha crystallin family GvpH PF05455.6 gi|452206348|ref|YP_007486470.1| - 8.4e-06 25.5 0.5 9.8e-06 25.3 0.3 1.2 1 0 0 1 1 1 1 GvpH CS PF04969.11 gi|452206348|ref|YP_007486470.1| - 9.2e-05 22.9 0.0 0.00013 22.4 0.0 1.1 1 0 0 1 1 1 1 CS domain SBF PF01758.11 gi|452206349|ref|YP_007486471.1| - 7.5e-49 165.6 11.9 7.5e-49 165.6 8.3 2.1 2 1 0 2 2 2 1 Sodium Bile acid symporter family HTH_20 PF12840.2 gi|452206350|ref|YP_007486472.1| - 1.8e-10 40.4 0.1 3.5e-10 39.5 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|452206350|ref|YP_007486472.1| - 1.4e-09 37.4 0.7 2.3e-09 36.7 0.1 1.7 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|452206350|ref|YP_007486472.1| - 0.0049 16.5 0.1 0.014 15.0 0.0 1.9 1 1 0 1 1 1 1 MarR family TrmB PF01978.14 gi|452206350|ref|YP_007486472.1| - 0.0075 15.9 0.0 0.013 15.1 0.0 1.5 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB GntR PF00392.16 gi|452206350|ref|YP_007486472.1| - 0.0079 15.6 0.1 0.029 13.8 0.0 1.8 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family PaaX PF07848.7 gi|452206350|ref|YP_007486472.1| - 0.03 14.3 0.1 0.053 13.5 0.0 1.5 1 1 0 1 1 1 0 PaaX-like protein E1-E2_ATPase PF00122.15 gi|452206351|ref|YP_007486473.1| - 1.4e-69 233.6 5.8 1.4e-69 233.6 4.1 2.2 4 0 0 4 4 4 1 E1-E2 ATPase Hydrolase PF00702.21 gi|452206351|ref|YP_007486473.1| - 1.4e-34 120.3 0.0 4.7e-34 118.6 0.0 1.9 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase_C PF00689.16 gi|452206351|ref|YP_007486473.1| - 2.1e-26 92.5 3.4 2.1e-26 92.5 0.1 2.3 2 0 0 2 2 2 1 Cation transporting ATPase, C-terminus Cation_ATPase_N PF00690.21 gi|452206351|ref|YP_007486473.1| - 1.7e-18 65.8 0.0 4.1e-18 64.6 0.0 1.7 1 0 0 1 1 1 1 Cation transporter/ATPase, N-terminus HAD PF12710.2 gi|452206351|ref|YP_007486473.1| - 1.4e-16 61.2 0.2 5.1e-16 59.4 0.1 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like2 PF13246.1 gi|452206351|ref|YP_007486473.1| - 3.2e-13 49.4 0.0 6.4e-13 48.4 0.0 1.5 1 0 0 1 1 1 1 Putative hydrolase of sodium-potassium ATPase alpha subunit Hydrolase_3 PF08282.7 gi|452206351|ref|YP_007486473.1| - 2.3e-05 24.1 2.0 0.0091 15.5 0.9 2.2 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase OrfB_Zn_ribbon PF07282.6 gi|452206353|ref|YP_007486475.1| - 6.3e-24 83.4 1.6 1.4e-23 82.2 1.1 1.7 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|452206353|ref|YP_007486475.1| - 0.016 14.6 0.0 0.024 14.0 0.0 1.3 1 0 0 1 1 1 0 Probable transposase CFEM PF05730.6 gi|452206353|ref|YP_007486475.1| - 0.64 9.8 6.8 2.6 7.9 1.3 2.3 2 0 0 2 2 2 0 CFEM domain Y1_Tnp PF01797.11 gi|452206354|ref|YP_007486476.1| - 2.2e-37 127.6 0.5 2.4e-37 127.4 0.4 1.0 1 0 0 1 1 1 1 Transposase IS200 like DUF1156 PF06634.7 gi|452206355|ref|YP_007486477.1| - 2.3e-11 43.2 0.0 4.2e-11 42.4 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1156) Methyltransf_26 PF13659.1 gi|452206355|ref|YP_007486477.1| - 9e-10 38.6 0.0 4.1e-08 33.2 0.0 2.7 1 1 0 1 1 1 1 Methyltransferase domain N6_N4_Mtase PF01555.13 gi|452206355|ref|YP_007486477.1| - 2.4e-08 33.7 1.1 0.0081 15.6 0.0 2.9 2 1 0 2 2 2 2 DNA methylase UPF0020 PF01170.13 gi|452206355|ref|YP_007486477.1| - 1.2e-07 31.4 0.0 0.017 14.6 0.0 2.5 2 0 0 2 2 2 2 Putative RNA methylase family UPF0020 MethyltransfD12 PF02086.10 gi|452206355|ref|YP_007486477.1| - 0.00038 19.9 0.5 0.007 15.8 0.0 2.3 2 0 0 2 2 2 1 D12 class N6 adenine-specific DNA methyltransferase Methyltransf_31 PF13847.1 gi|452206355|ref|YP_007486477.1| - 0.0023 17.5 0.0 0.15 11.6 0.0 3.1 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|452206355|ref|YP_007486477.1| - 0.015 15.8 0.0 3.3 8.3 0.0 3.4 2 1 0 2 2 2 0 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|452206355|ref|YP_007486477.1| - 0.024 14.0 0.0 2.7 7.3 0.0 2.3 2 0 0 2 2 2 0 Conserved hypothetical protein 95 Desulfoferrod_N PF06397.7 gi|452206355|ref|YP_007486477.1| - 0.4 10.1 3.1 1.9 7.9 0.0 2.9 3 0 0 3 3 3 0 Desulfoferrodoxin, N-terminal domain HypA PF01155.14 gi|452206355|ref|YP_007486477.1| - 8.3 6.1 11.0 16 5.2 0.3 3.0 1 1 1 2 2 2 0 Hydrogenase expression/synthesis hypA family DDE_Tnp_IS240 PF13610.1 gi|452206356|ref|YP_007486478.1| - 2e-15 57.0 0.1 2.6e-15 56.6 0.0 1.2 1 0 0 1 1 1 1 DDE domain rve PF00665.21 gi|452206356|ref|YP_007486478.1| - 0.00039 20.5 0.2 0.00062 19.8 0.1 1.4 1 0 0 1 1 1 1 Integrase core domain DDE_Tnp_IS66 PF03050.9 gi|452206356|ref|YP_007486478.1| - 0.00077 18.7 0.1 0.0022 17.2 0.1 1.7 1 1 0 1 1 1 1 Transposase IS66 family HTH_28 PF13518.1 gi|452206356|ref|YP_007486478.1| - 0.014 15.3 0.0 1.8 8.6 0.0 2.7 2 1 0 2 2 2 0 Helix-turn-helix domain DDE_3 PF13358.1 gi|452206356|ref|YP_007486478.1| - 0.08 12.6 0.0 0.15 11.7 0.0 1.6 1 1 0 1 1 1 0 DDE superfamily endonuclease HTH_7 PF02796.10 gi|452206358|ref|YP_007486480.1| - 3.4e-05 23.6 0.0 0.00014 21.6 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain of resolvase HTH_11 PF08279.7 gi|452206358|ref|YP_007486480.1| - 0.00025 20.6 0.2 0.0023 17.5 0.0 2.3 2 0 0 2 2 2 1 HTH domain MarR_2 PF12802.2 gi|452206358|ref|YP_007486480.1| - 0.00051 19.6 0.5 0.0011 18.5 0.1 1.7 2 0 0 2 2 2 1 MarR family HTH_27 PF13463.1 gi|452206358|ref|YP_007486480.1| - 0.001 19.3 0.2 0.0028 17.9 0.1 1.7 1 0 0 1 1 1 1 Winged helix DNA-binding domain GntR PF00392.16 gi|452206358|ref|YP_007486480.1| - 0.0013 18.1 0.5 0.0075 15.6 0.0 2.3 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family TrmB PF01978.14 gi|452206358|ref|YP_007486480.1| - 0.0014 18.2 0.0 0.004 16.8 0.0 1.8 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|452206358|ref|YP_007486480.1| - 0.0017 18.0 0.3 0.014 15.2 0.0 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|452206358|ref|YP_007486480.1| - 0.0033 17.0 0.1 0.051 13.2 0.0 2.4 2 0 0 2 2 2 1 Homeodomain-like domain WXG100 PF06013.7 gi|452206358|ref|YP_007486480.1| - 0.017 15.0 1.3 0.22 11.5 0.3 2.2 2 0 0 2 2 2 0 Proteins of 100 residues with WXG Histone_HNS PF00816.16 gi|452206358|ref|YP_007486480.1| - 0.023 15.2 2.3 0.023 15.2 1.6 1.6 2 0 0 2 2 2 0 H-NS histone family Spore_III_AF PF09581.5 gi|452206358|ref|YP_007486480.1| - 0.031 14.1 0.5 0.048 13.5 0.3 1.2 1 0 0 1 1 1 0 Stage III sporulation protein AF (Spore_III_AF) HTH_Crp_2 PF13545.1 gi|452206358|ref|YP_007486480.1| - 0.042 13.6 0.1 0.1 12.4 0.0 1.6 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain Bacillus_HBL PF05791.6 gi|452206358|ref|YP_007486480.1| - 0.081 12.2 0.4 0.12 11.7 0.3 1.3 1 0 0 1 1 1 0 Bacillus haemolytic enterotoxin (HBL) HTH_IclR PF09339.5 gi|452206358|ref|YP_007486480.1| - 0.11 12.1 0.0 0.25 10.9 0.0 1.6 1 0 0 1 1 1 0 IclR helix-turn-helix domain Sigma70_r4 PF04545.11 gi|452206358|ref|YP_007486480.1| - 0.13 11.5 0.5 5.5 6.3 0.1 2.5 2 0 0 2 2 2 0 Sigma-70, region 4 Nuc-transf PF10127.4 gi|452206358|ref|YP_007486480.1| - 0.31 10.3 5.7 0.12 11.7 1.5 1.8 1 1 1 2 2 2 0 Predicted nucleotidyltransferase adh_short PF00106.20 gi|452206359|ref|YP_007486481.1| - 6.1e-34 117.3 3.9 1e-33 116.6 2.6 1.4 2 0 0 2 2 2 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|452206359|ref|YP_007486481.1| - 9.7e-17 61.5 0.1 1.3e-16 61.1 0.1 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|452206359|ref|YP_007486481.1| - 9.9e-16 57.9 1.8 1.4e-15 57.4 1.3 1.2 1 0 0 1 1 1 1 KR domain NAD_binding_10 PF13460.1 gi|452206359|ref|YP_007486481.1| - 7.9e-08 32.5 3.3 1.2e-07 31.9 2.3 1.3 1 0 0 1 1 1 1 NADH(P)-binding Epimerase PF01370.16 gi|452206359|ref|YP_007486481.1| - 0.00016 21.2 0.2 0.00028 20.4 0.1 1.6 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family Eno-Rase_NADH_b PF12242.3 gi|452206359|ref|YP_007486481.1| - 0.00016 21.3 0.2 0.00038 20.1 0.2 1.6 1 0 0 1 1 1 1 NAD(P)H binding domain of trans-2-enoyl-CoA reductase Shikimate_DH PF01488.15 gi|452206359|ref|YP_007486481.1| - 0.00091 19.3 0.1 0.0089 16.1 0.0 2.5 3 0 0 3 3 3 1 Shikimate / quinate 5-dehydrogenase THF_DHG_CYH_C PF02882.14 gi|452206359|ref|YP_007486481.1| - 0.056 12.5 0.1 0.091 11.8 0.1 1.5 1 1 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain DUF2296 PF10058.4 gi|452206360|ref|YP_007486482.1| - 0.0027 17.4 0.2 0.0037 16.9 0.1 1.2 1 0 0 1 1 1 1 Predicted integral membrane metal-binding protein (DUF2296) zf-CHY PF05495.7 gi|452206360|ref|YP_007486482.1| - 0.0083 16.2 0.4 0.0089 16.1 0.3 1.1 1 0 0 1 1 1 1 CHY zinc finger HypA PF01155.14 gi|452206360|ref|YP_007486482.1| - 0.013 15.2 0.3 0.014 15.0 0.2 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family DZR PF12773.2 gi|452206360|ref|YP_007486482.1| - 0.015 15.1 1.1 0.022 14.5 0.8 1.4 1 1 0 1 1 1 0 Double zinc ribbon Cytochrome_C7 PF14522.1 gi|452206360|ref|YP_007486482.1| - 0.016 14.7 1.5 0.02 14.4 1.0 1.1 1 0 0 1 1 1 0 Cytochrome c7 zinc_ribbon_4 PF13717.1 gi|452206360|ref|YP_007486482.1| - 0.024 14.3 1.2 0.042 13.5 0.9 1.5 1 1 0 1 1 1 0 zinc-ribbon domain RRN7 PF11781.3 gi|452206360|ref|YP_007486482.1| - 0.032 13.7 1.4 4.2 6.9 0.1 2.1 2 0 0 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 zf-RING_4 PF14570.1 gi|452206360|ref|YP_007486482.1| - 0.033 13.7 2.1 0.071 12.6 1.5 1.5 1 1 0 1 1 1 0 RING/Ubox like zinc-binding domain DNA_RNApol_7kD PF03604.8 gi|452206360|ref|YP_007486482.1| - 0.036 13.5 3.5 0.58 9.6 2.4 2.0 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit PhnA_Zn_Ribbon PF08274.7 gi|452206360|ref|YP_007486482.1| - 0.041 13.6 1.8 1.3 8.8 0.1 2.1 2 0 0 2 2 2 0 PhnA Zinc-Ribbon zinc_ribbon_5 PF13719.1 gi|452206360|ref|YP_007486482.1| - 0.041 13.4 1.3 0.08 12.5 0.9 1.5 1 1 0 1 1 1 0 zinc-ribbon domain zf-RING_3 PF14369.1 gi|452206360|ref|YP_007486482.1| - 0.048 13.6 4.2 0.092 12.7 2.8 1.6 1 1 1 2 2 2 0 zinc-finger Cytochrom_c3_2 PF14537.1 gi|452206360|ref|YP_007486482.1| - 0.056 13.7 1.0 0.076 13.3 0.7 1.2 1 0 0 1 1 1 0 Cytochrome c3 zf-TFIIB PF13453.1 gi|452206360|ref|YP_007486482.1| - 0.057 12.6 3.2 0.15 11.2 2.2 1.6 1 1 0 1 1 1 0 Transcription factor zinc-finger DUF164 PF02591.10 gi|452206360|ref|YP_007486482.1| - 0.065 13.0 0.5 0.077 12.8 0.3 1.1 1 0 0 1 1 1 0 Putative zinc ribbon domain zf-C3HC4_3 PF13920.1 gi|452206360|ref|YP_007486482.1| - 0.067 12.8 0.9 0.093 12.4 0.6 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) DnaJ_CXXCXGXG PF00684.14 gi|452206360|ref|YP_007486482.1| - 0.15 12.0 0.6 0.23 11.5 0.4 1.4 1 1 0 1 1 1 0 DnaJ central domain Cytochrome_C554 PF13435.1 gi|452206360|ref|YP_007486482.1| - 0.17 11.9 1.8 0.21 11.6 1.2 1.1 1 0 0 1 1 1 0 Cytochrome c554 and c-prime zf-trcl PF13451.1 gi|452206360|ref|YP_007486482.1| - 0.2 11.3 4.4 4.5 6.9 3.1 2.0 1 1 0 1 1 1 0 Probable zinc-binding domain zf-NADH-PPase PF09297.6 gi|452206360|ref|YP_007486482.1| - 0.28 10.7 3.2 1.8 8.1 0.2 2.1 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zf-LITAF-like PF10601.4 gi|452206360|ref|YP_007486482.1| - 0.54 10.1 2.8 3.4 7.5 0.2 2.0 1 1 1 2 2 2 0 LITAF-like zinc ribbon domain DUF1924 PF09086.6 gi|452206360|ref|YP_007486482.1| - 0.63 10.1 2.6 0.63 10.1 1.0 1.6 1 1 1 2 2 2 0 Domain of unknown function (DUF1924) UPF0547 PF10571.4 gi|452206360|ref|YP_007486482.1| - 0.65 9.7 3.8 6.6 6.5 0.2 2.3 2 1 1 3 3 3 0 Uncharacterised protein family UPF0547 Zn-ribbon_8 PF09723.5 gi|452206360|ref|YP_007486482.1| - 0.86 9.5 4.2 4.4 7.3 2.9 1.9 1 1 0 1 1 1 0 Zinc ribbon domain MFS_1 PF07690.11 gi|452206361|ref|YP_007486483.1| - 7.8e-55 185.9 76.1 1.4e-45 155.5 29.9 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.1 gi|452206361|ref|YP_007486483.1| - 6.8e-09 34.6 14.6 2.2e-08 32.9 10.1 1.7 1 1 0 1 1 1 1 MFS/sugar transport protein Sugar_tr PF00083.19 gi|452206361|ref|YP_007486483.1| - 9.1e-05 21.1 34.0 0.00054 18.6 7.7 3.3 2 1 1 3 3 3 2 Sugar (and other) transporter MFS_1_like PF12832.2 gi|452206361|ref|YP_007486483.1| - 0.00036 20.2 5.2 0.86 9.4 0.3 3.7 3 0 0 3 3 3 2 MFS_1 like family LacY_symp PF01306.14 gi|452206361|ref|YP_007486483.1| - 0.0011 17.6 3.1 0.17 10.3 1.2 2.2 2 0 0 2 2 2 2 LacY proton/sugar symporter Metallophos_2 PF12850.2 gi|452206362|ref|YP_007486484.1| - 4.7e-32 110.9 0.1 5.8e-32 110.6 0.1 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|452206362|ref|YP_007486484.1| - 2.9e-13 49.6 0.3 4e-13 49.2 0.2 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_3 PF14582.1 gi|452206362|ref|YP_007486484.1| - 0.023 13.8 0.1 0.23 10.5 0.0 2.3 1 1 2 3 3 3 0 Metallophosphoesterase, calcineurin superfamily DUF1272 PF06906.6 gi|452206364|ref|YP_007486486.1| - 0.00053 19.7 0.5 0.00057 19.6 0.3 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1272) DZR PF12773.2 gi|452206364|ref|YP_007486486.1| - 0.0017 18.1 0.3 0.0018 18.0 0.2 1.1 1 0 0 1 1 1 1 Double zinc ribbon zf-UBR PF02207.15 gi|452206364|ref|YP_007486486.1| - 0.0038 16.9 0.2 0.0041 16.8 0.1 1.1 1 0 0 1 1 1 1 Putative zinc finger in N-recognin (UBR box) zf-TFIIB PF13453.1 gi|452206364|ref|YP_007486486.1| - 0.015 14.4 0.8 2.9 7.1 0.1 2.1 2 0 0 2 2 2 0 Transcription factor zinc-finger zf-IS66 PF13005.2 gi|452206364|ref|YP_007486486.1| - 0.023 14.6 1.4 0.1 12.6 0.2 2.0 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 NinF PF05810.7 gi|452206364|ref|YP_007486486.1| - 0.062 13.1 0.9 0.085 12.6 0.6 1.4 1 1 0 1 1 1 0 NinF protein HypA PF01155.14 gi|452206364|ref|YP_007486486.1| - 0.068 12.8 0.5 0.07 12.8 0.3 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Ribosomal_L37e PF01907.14 gi|452206364|ref|YP_007486486.1| - 0.09 12.5 0.3 0.1 12.3 0.2 1.1 1 0 0 1 1 1 0 Ribosomal protein L37e XPA_N PF01286.13 gi|452206364|ref|YP_007486486.1| - 0.098 12.3 1.2 3.8 7.2 0.1 2.1 2 0 0 2 2 2 0 XPA protein N-terminal NMD3 PF04981.8 gi|452206364|ref|YP_007486486.1| - 0.12 11.4 1.2 0.14 11.2 0.8 1.1 1 0 0 1 1 1 0 NMD3 family A2L_zn_ribbon PF08792.5 gi|452206364|ref|YP_007486486.1| - 0.14 11.6 1.0 8.8 5.9 0.1 2.1 2 0 0 2 2 2 0 A2L zinc ribbon domain Zn-ribbon_8 PF09723.5 gi|452206364|ref|YP_007486486.1| - 0.14 12.0 3.3 1.4 8.8 0.2 2.1 1 1 1 2 2 2 0 Zinc ribbon domain TF_Zn_Ribbon PF08271.7 gi|452206364|ref|YP_007486486.1| - 0.15 11.4 4.1 0.31 10.4 2.8 1.5 1 1 0 1 1 1 0 TFIIB zinc-binding DNA_RNApol_7kD PF03604.8 gi|452206364|ref|YP_007486486.1| - 0.2 11.1 3.7 3.3 7.2 2.6 2.0 1 1 1 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit ADK_lid PF05191.9 gi|452206364|ref|YP_007486486.1| - 0.56 9.9 2.9 0.4 10.3 0.3 1.9 1 1 1 2 2 2 0 Adenylate kinase, active site lid ILVD_EDD PF00920.16 gi|452206365|ref|YP_007486487.1| - 8.1e-204 677.8 1.5 9.2e-204 677.6 1.0 1.0 1 0 0 1 1 1 1 Dehydratase family CCG PF02754.11 gi|452206366|ref|YP_007486488.1| - 8.8e-17 60.9 0.1 1.3e-12 47.5 0.2 2.4 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_8 PF13183.1 gi|452206366|ref|YP_007486488.1| - 2.9e-11 43.2 7.0 3.4e-11 42.9 3.8 1.9 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|452206366|ref|YP_007486488.1| - 2.2e-10 40.6 5.5 2.2e-10 40.6 3.8 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|452206366|ref|YP_007486488.1| - 1e-09 37.5 12.3 2.3e-05 23.7 1.2 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|452206366|ref|YP_007486488.1| - 2.8e-09 37.2 3.9 0.0022 18.3 0.2 3.6 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|452206366|ref|YP_007486488.1| - 4.8e-08 32.6 13.0 6.9e-07 28.9 8.4 2.7 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|452206366|ref|YP_007486488.1| - 3.6e-07 29.7 18.4 0.0001 22.0 1.3 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|452206366|ref|YP_007486488.1| - 3.7e-06 27.2 14.4 1.4e-05 25.4 8.8 2.7 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|452206366|ref|YP_007486488.1| - 5.4e-06 26.6 6.5 5.4e-06 26.6 4.5 2.8 3 1 0 3 3 2 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|452206366|ref|YP_007486488.1| - 1.3e-05 24.8 22.3 0.00014 21.5 2.0 2.9 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|452206366|ref|YP_007486488.1| - 0.00025 20.8 11.0 0.023 14.5 0.3 2.9 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|452206366|ref|YP_007486488.1| - 0.0012 19.0 19.8 0.0094 16.2 0.8 2.9 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|452206366|ref|YP_007486488.1| - 0.0026 18.4 14.3 0.024 15.3 9.1 2.9 2 1 1 3 3 3 2 4Fe-4S double cluster binding domain Fer4_15 PF13459.1 gi|452206366|ref|YP_007486488.1| - 0.022 15.3 9.8 0.66 10.5 0.7 3.3 2 1 0 2 2 2 0 4Fe-4S single cluster domain PKD PF00801.15 gi|452206366|ref|YP_007486488.1| - 0.2 11.4 0.8 0.93 9.2 0.0 2.5 3 0 0 3 3 2 0 PKD domain Fer4_3 PF12798.2 gi|452206366|ref|YP_007486488.1| - 0.23 12.1 25.0 0.17 12.4 3.4 3.2 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_13 PF13370.1 gi|452206366|ref|YP_007486488.1| - 0.24 11.8 14.3 1.6 9.1 2.4 2.7 2 0 0 2 2 2 0 4Fe-4S single cluster domain Nitrate_red_gam PF02665.9 gi|452206366|ref|YP_007486488.1| - 2.8 7.2 9.0 0.21 10.9 2.2 2.0 2 1 0 2 2 2 0 Nitrate reductase gamma subunit DUF307 PF03733.8 gi|452206366|ref|YP_007486488.1| - 3.5 8.1 11.3 0.24 11.8 0.2 3.3 3 0 0 3 3 3 0 Domain of unknown function (DUF307) CbiQ PF02361.11 gi|452206367|ref|YP_007486489.1| - 2.7e-15 56.5 2.9 9.6e-15 54.7 2.0 1.7 1 1 0 1 1 1 1 Cobalt transport protein Acyl_transf_3 PF01757.17 gi|452206367|ref|YP_007486489.1| - 0.029 13.2 0.7 0.04 12.7 0.5 1.2 1 0 0 1 1 1 0 Acyltransferase family ABC_tran PF00005.22 gi|452206368|ref|YP_007486490.1| - 1.3e-26 93.4 0.0 2.5e-26 92.5 0.0 1.4 2 0 0 2 2 1 1 ABC transporter AAA_21 PF13304.1 gi|452206368|ref|YP_007486490.1| - 8.9e-07 29.1 0.0 0.035 14.0 0.0 2.1 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|452206368|ref|YP_007486490.1| - 1.8e-06 27.3 0.0 2.9e-06 26.6 0.0 1.3 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain SbcCD_C PF13558.1 gi|452206368|ref|YP_007486490.1| - 0.00013 21.7 0.0 0.0057 16.5 0.0 2.9 2 1 0 2 2 2 1 Putative exonuclease SbcCD, C subunit AAA_16 PF13191.1 gi|452206368|ref|YP_007486490.1| - 0.00019 21.4 0.1 0.0018 18.3 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.1 gi|452206368|ref|YP_007486490.1| - 0.0015 18.0 0.0 0.0027 17.1 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain Mg_chelatase PF01078.16 gi|452206368|ref|YP_007486490.1| - 0.0024 17.0 0.0 0.0034 16.5 0.0 1.3 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_25 PF13481.1 gi|452206368|ref|YP_007486490.1| - 0.0082 15.5 0.5 0.055 12.8 0.0 2.2 2 1 0 2 2 2 1 AAA domain Zeta_toxin PF06414.7 gi|452206368|ref|YP_007486490.1| - 0.013 14.5 0.0 0.023 13.7 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin NTPase_1 PF03266.10 gi|452206368|ref|YP_007486490.1| - 0.016 14.9 0.0 0.047 13.3 0.0 1.7 2 0 0 2 2 2 0 NTPase AAA_22 PF13401.1 gi|452206368|ref|YP_007486490.1| - 0.019 15.1 0.0 0.027 14.6 0.0 1.5 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|452206368|ref|YP_007486490.1| - 0.026 14.4 0.0 0.062 13.1 0.0 1.9 1 1 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|452206368|ref|YP_007486490.1| - 0.026 14.1 0.0 0.043 13.4 0.0 1.3 1 0 0 1 1 1 0 NACHT domain AAA_30 PF13604.1 gi|452206368|ref|YP_007486490.1| - 0.03 13.9 0.1 0.1 12.1 0.0 1.8 2 0 0 2 2 2 0 AAA domain Miro PF08477.8 gi|452206368|ref|YP_007486490.1| - 0.031 14.7 0.0 0.052 14.0 0.0 1.3 1 0 0 1 1 1 0 Miro-like protein AAA_19 PF13245.1 gi|452206368|ref|YP_007486490.1| - 0.032 13.9 0.3 0.17 11.6 0.0 2.3 2 0 0 2 2 2 0 Part of AAA domain AAA_28 PF13521.1 gi|452206368|ref|YP_007486490.1| - 0.032 14.1 0.1 0.15 11.9 0.0 2.1 3 0 0 3 3 2 0 AAA domain T2SE PF00437.15 gi|452206368|ref|YP_007486490.1| - 0.042 12.7 0.1 0.083 11.7 0.0 1.5 2 0 0 2 2 2 0 Type II/IV secretion system protein AAA_10 PF12846.2 gi|452206368|ref|YP_007486490.1| - 0.042 13.2 0.0 1.9 7.8 0.0 2.2 2 0 0 2 2 2 0 AAA-like domain AAA_14 PF13173.1 gi|452206368|ref|YP_007486490.1| - 0.044 13.6 0.0 0.068 13.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.1 gi|452206368|ref|YP_007486490.1| - 0.052 12.5 0.0 2.3 7.1 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain G-alpha PF00503.15 gi|452206368|ref|YP_007486490.1| - 0.056 12.1 0.0 0.075 11.7 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit UPF0079 PF02367.12 gi|452206368|ref|YP_007486490.1| - 0.074 12.6 0.0 0.13 11.9 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 KaiC PF06745.8 gi|452206368|ref|YP_007486490.1| - 0.08 12.0 0.0 0.18 10.8 0.0 1.5 2 0 0 2 2 2 0 KaiC FtsK_SpoIIIE PF01580.13 gi|452206368|ref|YP_007486490.1| - 0.085 12.3 0.0 0.17 11.3 0.0 1.5 1 0 0 1 1 1 0 FtsK/SpoIIIE family cobW PF02492.14 gi|452206368|ref|YP_007486490.1| - 0.093 12.1 0.0 0.31 10.4 0.0 1.8 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain Arch_ATPase PF01637.13 gi|452206368|ref|YP_007486490.1| - 0.12 12.1 0.0 0.21 11.2 0.0 1.4 1 0 0 1 1 1 0 Archaeal ATPase DUF258 PF03193.11 gi|452206368|ref|YP_007486490.1| - 0.12 11.6 0.0 0.17 11.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_23 PF13476.1 gi|452206368|ref|YP_007486490.1| - 0.12 12.7 0.0 0.15 12.3 0.0 1.1 1 0 0 1 1 1 0 AAA domain AAA_13 PF13166.1 gi|452206368|ref|YP_007486490.1| - 0.13 10.7 0.0 0.29 9.5 0.0 1.5 2 0 0 2 2 2 0 AAA domain ATP_bind_1 PF03029.12 gi|452206368|ref|YP_007486490.1| - 0.18 11.3 0.0 0.26 10.7 0.0 1.2 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein BioY PF02632.9 gi|452206369|ref|YP_007486491.1| - 4.3e-38 130.2 23.5 7.2e-38 129.5 16.3 1.2 1 0 0 1 1 1 1 BioY family DUF3816 PF12822.2 gi|452206369|ref|YP_007486491.1| - 0.00042 20.2 16.7 0.00065 19.6 11.5 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF3816) DUF3311 PF11755.3 gi|452206369|ref|YP_007486491.1| - 0.47 10.0 9.5 0.029 13.8 2.3 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF3311) Pyr_redox_2 PF07992.9 gi|452206371|ref|YP_007486493.1| - 1.1e-25 90.7 0.2 1.4e-25 90.3 0.1 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|452206371|ref|YP_007486493.1| - 6.7e-09 36.0 0.1 0.0065 16.8 0.2 2.5 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|452206371|ref|YP_007486493.1| - 1.5e-08 33.9 5.4 0.00026 20.0 1.4 2.5 1 1 1 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_3 PF13738.1 gi|452206371|ref|YP_007486493.1| - 7.8e-08 32.6 0.6 0.00022 21.3 0.4 2.2 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|452206371|ref|YP_007486493.1| - 7.5e-07 28.3 7.2 0.0001 21.3 0.9 2.7 2 1 1 3 3 3 2 FAD binding domain NAD_binding_9 PF13454.1 gi|452206371|ref|YP_007486493.1| - 8.9e-06 25.5 1.9 0.0061 16.3 0.0 3.2 3 0 0 3 3 3 1 FAD-NAD(P)-binding FAD_oxidored PF12831.2 gi|452206371|ref|YP_007486493.1| - 1.9e-05 23.9 1.3 3.5e-05 23.0 0.9 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|452206371|ref|YP_007486493.1| - 2.1e-05 23.2 0.5 0.0016 17.0 0.6 2.2 2 0 0 2 2 2 1 HI0933-like protein NAD_binding_8 PF13450.1 gi|452206371|ref|YP_007486493.1| - 0.00011 22.1 0.3 0.00025 21.0 0.2 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain K_oxygenase PF13434.1 gi|452206371|ref|YP_007486493.1| - 0.00011 21.2 0.0 0.00043 19.3 0.0 1.7 2 0 0 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) GIDA PF01134.17 gi|452206371|ref|YP_007486493.1| - 0.00016 20.7 1.5 0.00016 20.7 1.1 2.1 2 1 1 3 3 3 1 Glucose inhibited division protein A FAD_binding_3 PF01494.14 gi|452206371|ref|YP_007486493.1| - 0.00075 18.6 0.6 0.0012 17.9 0.4 1.3 1 0 0 1 1 1 1 FAD binding domain Thi4 PF01946.12 gi|452206371|ref|YP_007486493.1| - 0.014 14.5 0.1 0.025 13.6 0.1 1.4 1 0 0 1 1 1 0 Thi4 family AlaDh_PNT_C PF01262.16 gi|452206371|ref|YP_007486493.1| - 0.095 12.2 0.3 0.17 11.4 0.2 1.4 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Trp_halogenase PF04820.9 gi|452206371|ref|YP_007486493.1| - 0.22 10.0 0.8 0.5 8.9 0.2 1.8 2 0 0 2 2 2 0 Tryptophan halogenase ArsA_ATPase PF02374.10 gi|452206372|ref|YP_007486494.1| - 1.4e-76 257.5 0.0 1.6e-76 257.3 0.0 1.0 1 0 0 1 1 1 1 Anion-transporting ATPase CbiA PF01656.18 gi|452206372|ref|YP_007486494.1| - 6.5e-08 32.2 0.0 5.5e-07 29.1 0.0 2.0 2 0 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|452206372|ref|YP_007486494.1| - 9.4e-05 22.3 0.0 0.0047 16.8 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_10 PF12846.2 gi|452206372|ref|YP_007486494.1| - 0.01 15.3 0.0 0.012 15.0 0.0 1.3 1 0 0 1 1 1 1 AAA-like domain AAA_25 PF13481.1 gi|452206372|ref|YP_007486494.1| - 0.011 15.0 3.1 0.017 14.5 0.8 2.3 2 1 0 2 2 2 0 AAA domain Fer4_NifH PF00142.13 gi|452206372|ref|YP_007486494.1| - 0.086 12.0 0.0 0.15 11.2 0.0 1.3 1 0 0 1 1 1 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family YhjQ PF06564.7 gi|452206372|ref|YP_007486494.1| - 0.17 11.2 0.0 0.26 10.6 0.0 1.3 1 0 0 1 1 1 0 YhjQ protein FAD_binding_2 PF00890.19 gi|452206373|ref|YP_007486495.1| - 1.2e-05 24.4 7.8 0.00019 20.3 0.9 2.2 2 0 0 2 2 2 2 FAD binding domain DAO PF01266.19 gi|452206373|ref|YP_007486495.1| - 4.4e-05 22.5 6.3 0.022 13.6 1.9 2.7 2 1 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|452206373|ref|YP_007486495.1| - 0.0013 18.6 11.3 0.037 13.8 2.4 2.3 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|452206373|ref|YP_007486495.1| - 0.0045 16.0 1.5 0.0073 15.3 1.1 1.3 1 0 0 1 1 1 1 FAD binding domain NAD_binding_8 PF13450.1 gi|452206373|ref|YP_007486495.1| - 0.0047 16.9 0.7 0.0047 16.9 0.5 2.7 2 1 0 2 2 2 1 NAD(P)-binding Rossmann-like domain AlaDh_PNT_C PF01262.16 gi|452206373|ref|YP_007486495.1| - 0.013 15.0 1.6 0.014 14.9 0.4 1.5 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain GIDA PF01134.17 gi|452206373|ref|YP_007486495.1| - 0.043 12.6 0.2 0.043 12.6 0.1 1.8 2 0 0 2 2 2 0 Glucose inhibited division protein A Pyr_redox PF00070.22 gi|452206373|ref|YP_007486495.1| - 0.14 12.5 0.7 0.14 12.5 0.5 2.0 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|452206373|ref|YP_007486495.1| - 0.18 10.9 2.4 0.15 11.1 0.5 1.7 2 0 0 2 2 2 0 Thi4 family PhoU PF01895.14 gi|452206374|ref|YP_007486496.1| - 6.7e-12 45.6 4.0 2.3e-10 40.7 0.0 2.4 2 0 0 2 2 2 2 PhoU domain Antitoxin-MazE PF04014.13 gi|452206374|ref|YP_007486496.1| - 6.9e-05 22.4 0.0 0.00015 21.4 0.0 1.6 1 0 0 1 1 1 1 Antidote-toxin recognition MazE PAS_4 PF08448.5 gi|452206375|ref|YP_007486497.1| - 0.0049 16.8 0.4 0.0074 16.3 0.3 1.2 1 0 0 1 1 1 1 PAS fold Fer4_18 PF13746.1 gi|452206375|ref|YP_007486497.1| - 0.023 15.1 1.0 0.027 14.8 0.2 1.5 2 0 0 2 2 2 0 4Fe-4S dicluster domain YokU PF14122.1 gi|452206375|ref|YP_007486497.1| - 0.11 12.1 0.4 0.24 11.1 0.0 1.6 2 0 0 2 2 2 0 YokU-like protein Helicase_C_2 PF13307.1 gi|452206376|ref|YP_007486498.1| - 2.8e-27 95.7 0.0 4.8e-27 94.9 0.0 1.3 1 0 0 1 1 1 1 Helicase C-terminal domain DEAD_2 PF06733.10 gi|452206376|ref|YP_007486498.1| - 1.2e-07 31.3 0.0 2.9e-07 30.0 0.0 1.6 1 1 0 1 1 1 1 DEAD_2 ResIII PF04851.10 gi|452206376|ref|YP_007486498.1| - 0.00044 20.1 0.0 0.01 15.6 0.0 2.2 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit AAA_19 PF13245.1 gi|452206376|ref|YP_007486498.1| - 0.00064 19.4 1.1 0.0027 17.4 0.0 2.7 3 0 0 3 3 3 1 Part of AAA domain PhoH PF02562.11 gi|452206376|ref|YP_007486498.1| - 0.0038 16.4 0.0 0.0075 15.5 0.0 1.4 1 0 0 1 1 1 1 PhoH-like protein DEAD PF00270.24 gi|452206376|ref|YP_007486498.1| - 0.07 12.6 0.0 8.4 5.8 0.0 2.9 3 0 0 3 3 3 0 DEAD/DEAH box helicase DUF1684 PF07920.6 gi|452206377|ref|YP_007486499.1| - 7.8e-50 168.4 0.3 1.3e-49 167.7 0.0 1.4 2 0 0 2 2 2 1 Protein of unknown function (DUF1684) Sulfatase PF00884.18 gi|452206378|ref|YP_007486500.1| - 2.8e-30 105.5 0.0 3.8e-30 105.1 0.0 1.1 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.17 gi|452206378|ref|YP_007486500.1| - 8.2e-09 35.2 0.2 0.0001 21.7 0.0 2.1 2 0 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase DUF229 PF02995.12 gi|452206378|ref|YP_007486500.1| - 0.054 11.9 0.0 0.096 11.0 0.0 1.4 2 0 0 2 2 2 0 Protein of unknown function (DUF229) Peptidase_C70 PF12385.3 gi|452206378|ref|YP_007486500.1| - 0.094 12.4 0.0 13 5.4 0.0 2.2 2 0 0 2 2 2 0 Papain-like cysteine protease AvrRpt2 DHFR_1 PF00186.14 gi|452206379|ref|YP_007486501.1| - 6.8e-38 129.7 0.0 7.5e-38 129.6 0.0 1.0 1 0 0 1 1 1 1 Dihydrofolate reductase Methyltransf_11 PF08241.7 gi|452206380|ref|YP_007486502.1| - 4.5e-23 81.5 0.0 6.8e-23 80.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|452206380|ref|YP_007486502.1| - 6e-17 61.6 0.0 7.4e-17 61.3 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|452206380|ref|YP_007486502.1| - 7.2e-13 48.7 0.0 1.3e-12 47.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|452206380|ref|YP_007486502.1| - 1.2e-11 44.6 0.0 1.6e-11 44.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|452206380|ref|YP_007486502.1| - 6.4e-11 42.8 0.0 1.1e-10 42.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|452206380|ref|YP_007486502.1| - 1.4e-10 41.5 0.0 2.1e-10 40.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|452206380|ref|YP_007486502.1| - 1.8e-10 40.3 0.0 4.6e-10 39.0 0.0 1.5 1 1 1 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_26 PF13659.1 gi|452206380|ref|YP_007486502.1| - 6e-08 32.7 0.3 6.3e-07 29.4 0.2 2.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_9 PF08003.6 gi|452206380|ref|YP_007486502.1| - 1.3e-05 24.1 0.0 1.8e-05 23.6 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) MTS PF05175.9 gi|452206380|ref|YP_007486502.1| - 0.00011 21.6 0.0 0.00022 20.6 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_32 PF13679.1 gi|452206380|ref|YP_007486502.1| - 0.00065 19.3 0.0 0.00097 18.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.15 gi|452206380|ref|YP_007486502.1| - 0.0029 16.7 0.0 0.0041 16.2 0.0 1.3 1 1 0 1 1 1 1 Mycolic acid cyclopropane synthetase PCMT PF01135.14 gi|452206380|ref|YP_007486502.1| - 0.0047 16.4 0.0 0.008 15.7 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) PrmA PF06325.8 gi|452206380|ref|YP_007486502.1| - 0.007 15.5 0.0 0.012 14.7 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) PASTA PF03793.14 gi|452206380|ref|YP_007486502.1| - 0.011 15.3 0.0 1.8 8.2 0.0 2.3 2 0 0 2 2 2 0 PASTA domain Methyltransf_8 PF05148.10 gi|452206380|ref|YP_007486502.1| - 0.013 15.1 0.0 0.052 13.1 0.0 1.8 1 1 0 1 1 1 0 Hypothetical methyltransferase MetW PF07021.7 gi|452206380|ref|YP_007486502.1| - 0.026 13.9 0.0 0.033 13.5 0.0 1.2 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW FtsJ PF01728.14 gi|452206380|ref|YP_007486502.1| - 0.12 12.3 0.0 0.88 9.5 0.0 1.9 1 1 1 2 2 2 0 FtsJ-like methyltransferase DDE_3 PF13358.1 gi|452206381|ref|YP_007486503.1| - 2.6e-22 79.1 0.0 4.7e-22 78.3 0.0 1.4 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_33 PF13592.1 gi|452206381|ref|YP_007486503.1| - 4.9e-17 61.2 1.4 4.8e-16 58.0 0.1 3.1 4 0 0 4 4 4 1 Winged helix-turn helix HTH_29 PF13551.1 gi|452206381|ref|YP_007486503.1| - 1.3e-15 57.4 0.0 3.3e-15 56.1 0.0 1.7 2 0 0 2 2 2 1 Winged helix-turn helix HTH_32 PF13565.1 gi|452206381|ref|YP_007486503.1| - 8.1e-09 36.1 2.5 6.3e-08 33.3 0.2 3.3 2 1 1 3 3 3 1 Homeodomain-like domain HTH_23 PF13384.1 gi|452206381|ref|YP_007486503.1| - 1.9e-06 27.3 0.2 6e-06 25.7 0.0 1.9 2 0 0 2 2 2 1 Homeodomain-like domain rve PF00665.21 gi|452206381|ref|YP_007486503.1| - 5.1e-05 23.3 0.0 0.00053 20.0 0.0 2.3 2 0 0 2 2 2 1 Integrase core domain HTH_28 PF13518.1 gi|452206381|ref|YP_007486503.1| - 0.0002 21.2 0.0 0.0011 18.8 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_Tnp_1 PF01527.15 gi|452206381|ref|YP_007486503.1| - 0.00059 19.7 0.0 0.0012 18.7 0.0 1.5 1 0 0 1 1 1 1 Transposase HTH_38 PF13936.1 gi|452206381|ref|YP_007486503.1| - 0.0061 16.0 0.0 0.03 13.8 0.0 2.2 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_30 PF13556.1 gi|452206381|ref|YP_007486503.1| - 0.013 15.1 0.0 0.026 14.1 0.0 1.4 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain DDE_1 PF03184.14 gi|452206381|ref|YP_007486503.1| - 0.038 13.1 0.0 0.094 11.8 0.0 1.6 1 0 0 1 1 1 0 DDE superfamily endonuclease DDE_Tnp_ISAZ013 PF07592.6 gi|452206381|ref|YP_007486503.1| - 0.058 12.1 0.0 7.7 5.1 0.0 2.2 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain HTH_21 PF13276.1 gi|452206381|ref|YP_007486503.1| - 0.074 13.0 0.0 0.18 11.8 0.0 1.5 1 0 0 1 1 1 0 HTH-like domain Sigma70_r4_2 PF08281.7 gi|452206381|ref|YP_007486503.1| - 0.12 11.8 0.0 0.32 10.5 0.0 1.7 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_Tnp_ISL3 PF13542.1 gi|452206381|ref|YP_007486503.1| - 0.13 11.5 0.0 0.91 8.7 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 MarR PF01047.17 gi|452206381|ref|YP_007486503.1| - 0.14 11.8 0.0 0.61 9.8 0.0 2.0 2 0 0 2 2 2 0 MarR family PQQ_3 PF13570.1 gi|452206382|ref|YP_007486504.1| - 2e-81 266.2 46.2 2.8e-12 46.4 1.8 8.4 8 0 0 8 8 8 8 PQQ-like domain PQQ_2 PF13360.1 gi|452206382|ref|YP_007486504.1| - 2.6e-61 207.1 22.0 5.4e-27 94.7 2.5 4.0 1 1 3 4 4 4 4 PQQ-like domain PQQ PF01011.16 gi|452206382|ref|YP_007486504.1| - 1.2e-49 163.3 18.0 2.3e-08 33.1 0.2 8.8 9 0 0 9 9 9 8 PQQ enzyme repeat DUF4394 PF14339.1 gi|452206382|ref|YP_007486504.1| - 8.2e-06 25.2 2.0 1.6 7.9 0.0 4.2 1 1 2 4 4 4 3 Domain of unknown function (DUF4394) DAP10 PF07213.6 gi|452206382|ref|YP_007486504.1| - 0.036 13.8 0.0 1.2e+02 2.5 0.0 4.7 5 0 0 5 5 5 0 DAP10 membrane protein Indigoidine_A PF04227.7 gi|452206382|ref|YP_007486504.1| - 0.047 12.9 1.2 18 4.4 0.0 4.0 3 2 2 5 5 5 0 Indigoidine synthase A like protein dUTPase PF00692.14 gi|452206384|ref|YP_007486506.1| - 1.8e-11 43.5 0.0 2.8e-11 42.9 0.0 1.2 1 0 0 1 1 1 1 dUTPase DUF2892 PF11127.3 gi|452206385|ref|YP_007486507.1| - 2.7e-17 62.3 3.9 5.8e-17 61.2 2.7 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF2892) IncA PF04156.9 gi|452206385|ref|YP_007486507.1| - 0.14 11.7 9.7 0.16 11.5 6.8 1.0 1 0 0 1 1 1 0 IncA protein DUF973 PF06157.6 gi|452206385|ref|YP_007486507.1| - 0.16 10.9 1.6 0.18 10.7 1.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF973) PGPGW PF09656.5 gi|452206385|ref|YP_007486507.1| - 0.46 9.8 10.9 2.1 7.6 1.1 2.3 2 0 0 2 2 2 0 Putative transmembrane protein (PGPGW) DUF308 PF03729.8 gi|452206385|ref|YP_007486507.1| - 0.99 9.4 10.8 1.5 8.8 2.5 2.1 1 1 1 2 2 2 0 Short repeat of unknown function (DUF308) DUF3188 PF11384.3 gi|452206385|ref|YP_007486507.1| - 5.6 6.6 8.3 11 5.6 0.7 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3188) ATP1G1_PLM_MAT8 PF02038.11 gi|452206385|ref|YP_007486507.1| - 5.8 6.0 7.5 3.7 6.6 0.2 2.2 2 0 0 2 2 2 0 ATP1G1/PLM/MAT8 family CbiA PF01656.18 gi|452206387|ref|YP_007486509.1| - 1.3e-30 106.2 0.0 1.6e-30 105.9 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|452206387|ref|YP_007486509.1| - 2e-10 40.8 0.0 3.2e-10 40.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain MipZ PF09140.6 gi|452206387|ref|YP_007486509.1| - 5.3e-06 25.7 0.0 0.00018 20.6 0.0 2.1 1 1 0 1 1 1 1 ATPase MipZ ArsA_ATPase PF02374.10 gi|452206387|ref|YP_007486509.1| - 9e-06 24.9 0.4 2.6e-05 23.4 0.1 1.8 2 0 0 2 2 2 1 Anion-transporting ATPase YhjQ PF06564.7 gi|452206387|ref|YP_007486509.1| - 0.00036 19.9 0.1 0.0007 19.0 0.0 1.6 1 1 0 1 1 1 1 YhjQ protein Fer4_NifH PF00142.13 gi|452206387|ref|YP_007486509.1| - 0.00037 19.7 0.0 0.0018 17.5 0.0 1.9 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_24 PF13479.1 gi|452206387|ref|YP_007486509.1| - 0.067 12.7 0.1 0.18 11.3 0.0 1.8 2 0 0 2 2 2 0 AAA domain VirC1 PF07015.6 gi|452206387|ref|YP_007486509.1| - 0.077 12.0 1.7 1.3 8.0 0.0 2.9 1 1 3 4 4 4 0 VirC1 protein SRP54 PF00448.17 gi|452206387|ref|YP_007486509.1| - 0.096 12.1 0.0 0.2 11.0 0.0 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Xan_ur_permease PF00860.15 gi|452206388|ref|YP_007486510.1| - 1.4e-33 115.9 41.2 3.4e-33 114.6 28.6 1.5 1 1 0 1 1 1 1 Permease family Epiglycanin_C PF14654.1 gi|452206388|ref|YP_007486510.1| - 6.6 6.7 8.5 0.69 9.9 0.1 3.4 3 1 0 4 4 4 0 Mucin, catalytic, TM and cytoplasmic tail region Pribosyltran PF00156.22 gi|452206389|ref|YP_007486511.1| - 2.2e-12 46.8 0.2 4.8e-12 45.7 0.1 1.5 1 0 0 1 1 1 1 Phosphoribosyl transferase domain MOFRL PF05161.8 gi|452206389|ref|YP_007486511.1| - 0.001 19.1 0.2 0.009 16.1 0.1 2.2 2 0 0 2 2 2 1 MOFRL family HTH_3 PF01381.17 gi|452206389|ref|YP_007486511.1| - 0.009 15.8 0.0 0.022 14.6 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.1 gi|452206389|ref|YP_007486511.1| - 0.01 16.0 1.9 0.03 14.5 1.3 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain Pribosyltran PF00156.22 gi|452206390|ref|YP_007486512.1| - 2.3e-08 33.7 5.3 8.1e-08 32.0 3.7 1.8 1 1 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|452206390|ref|YP_007486512.1| - 0.00094 18.4 0.2 0.0012 18.1 0.1 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.1 gi|452206390|ref|YP_007486512.1| - 0.026 13.8 0.2 0.037 13.3 0.1 1.2 1 0 0 1 1 1 0 Phosphoribosyl transferase eIF-1a PF01176.14 gi|452206391|ref|YP_007486513.1| - 1.3e-27 94.9 0.3 1.7e-27 94.5 0.2 1.2 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 Sclerostin PF05463.6 gi|452206391|ref|YP_007486513.1| - 0.02 14.4 0.0 0.027 13.9 0.0 1.2 1 0 0 1 1 1 0 Sclerostin (SOST) Peptidase_M22 PF00814.20 gi|452206393|ref|YP_007486515.1| - 5.1e-72 242.5 0.0 7.1e-72 242.1 0.0 1.1 1 0 0 1 1 1 1 Glycoprotease family APH PF01636.18 gi|452206393|ref|YP_007486515.1| - 2.1e-06 27.6 6.5 5.2e-05 23.0 0.8 2.4 1 1 1 2 2 2 2 Phosphotransferase enzyme family Kdo PF06293.9 gi|452206393|ref|YP_007486515.1| - 0.00027 20.0 0.0 0.005 15.9 0.0 2.1 1 1 1 2 2 2 1 Lipopolysaccharide kinase (Kdo/WaaP) family Pkinase PF00069.20 gi|452206393|ref|YP_007486515.1| - 0.029 13.5 0.0 0.044 12.9 0.0 1.2 1 0 0 1 1 1 0 Protein kinase domain YycC PF14174.1 gi|452206393|ref|YP_007486515.1| - 0.15 11.7 0.0 0.27 10.9 0.0 1.3 1 0 0 1 1 1 0 YycC-like protein Ribosomal_S27 PF01599.14 gi|452206394|ref|YP_007486516.1| - 2.9e-09 36.6 5.6 3.3e-09 36.4 3.9 1.1 1 0 0 1 1 1 1 Ribosomal protein S27a FYVE PF01363.16 gi|452206394|ref|YP_007486516.1| - 0.002 17.9 1.1 0.0026 17.6 0.8 1.2 1 0 0 1 1 1 1 FYVE zinc finger RNA_POL_M_15KD PF02150.11 gi|452206394|ref|YP_007486516.1| - 0.0056 16.3 1.1 0.0096 15.5 0.7 1.4 1 0 0 1 1 1 1 RNA polymerases M/15 Kd subunit zinc_ribbon_2 PF13240.1 gi|452206394|ref|YP_007486516.1| - 0.016 14.7 3.8 1.3 8.5 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DZR PF12773.2 gi|452206394|ref|YP_007486516.1| - 0.019 14.7 2.8 0.027 14.3 1.9 1.3 1 1 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|452206394|ref|YP_007486516.1| - 0.019 14.1 4.6 0.04 13.1 3.2 1.6 1 1 0 1 1 1 0 zinc-ribbon domain zf-RING_3 PF14369.1 gi|452206394|ref|YP_007486516.1| - 0.032 14.2 0.1 0.032 14.2 0.1 1.8 2 0 0 2 2 2 0 zinc-finger C1_1 PF00130.17 gi|452206394|ref|YP_007486516.1| - 0.041 13.6 0.5 0.045 13.4 0.3 1.1 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) IBR PF01485.16 gi|452206394|ref|YP_007486516.1| - 0.061 13.1 0.3 0.062 13.1 0.2 1.1 1 0 0 1 1 1 0 IBR domain zinc-ribbons_6 PF07191.7 gi|452206394|ref|YP_007486516.1| - 0.062 13.0 0.4 0.079 12.7 0.3 1.1 1 0 0 1 1 1 0 zinc-ribbons RNHCP PF12647.2 gi|452206394|ref|YP_007486516.1| - 0.073 12.9 4.5 0.92 9.3 3.4 1.9 1 1 0 1 1 1 0 RNHCP domain zf-NADH-PPase PF09297.6 gi|452206394|ref|YP_007486516.1| - 0.11 12.0 5.5 2.6 7.6 0.5 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain DUF2082 PF09855.4 gi|452206394|ref|YP_007486516.1| - 0.12 12.2 4.4 0.48 10.2 0.2 2.5 3 0 0 3 3 3 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) Auto_anti-p27 PF06677.7 gi|452206394|ref|YP_007486516.1| - 0.27 11.0 5.6 19 5.1 0.3 2.1 1 1 1 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Nudix_N_2 PF14803.1 gi|452206394|ref|YP_007486516.1| - 0.3 10.7 8.8 5.1 6.8 1.0 2.1 1 1 1 2 2 2 0 Nudix N-terminal RRN7 PF11781.3 gi|452206394|ref|YP_007486516.1| - 0.37 10.3 5.0 1.9 8.0 0.2 2.3 1 1 1 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 YhfH PF14149.1 gi|452206394|ref|YP_007486516.1| - 0.45 10.3 2.9 9.5 6.1 0.5 2.2 2 0 0 2 2 2 0 YhfH-like protein TF_Zn_Ribbon PF08271.7 gi|452206394|ref|YP_007486516.1| - 0.57 9.5 4.5 1.8 7.9 3.1 1.8 1 1 0 1 1 1 0 TFIIB zinc-binding GFA PF04828.9 gi|452206394|ref|YP_007486516.1| - 0.61 10.0 2.8 1.5 8.8 0.1 1.9 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme Ribosomal_L37e PF01907.14 gi|452206394|ref|YP_007486516.1| - 0.83 9.4 5.5 1.4 8.8 3.8 1.4 1 1 0 1 1 1 0 Ribosomal protein L37e zf-CSL PF05207.8 gi|452206394|ref|YP_007486516.1| - 1.7 8.2 5.7 4.3 6.9 3.8 1.8 1 1 1 2 2 2 0 CSL zinc finger FeS PF04060.8 gi|452206394|ref|YP_007486516.1| - 1.8 8.1 4.6 0.57 9.8 0.5 1.9 2 0 0 2 2 2 0 Putative Fe-S cluster Zn_Tnp_IS1595 PF12760.2 gi|452206394|ref|YP_007486516.1| - 2.5 7.9 5.6 17 5.3 4.0 1.9 1 1 0 1 1 1 0 Transposase zinc-ribbon domain NOB1_Zn_bind PF08772.6 gi|452206394|ref|YP_007486516.1| - 2.6 7.9 5.1 1.9 8.3 0.1 2.0 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like UPF0547 PF10571.4 gi|452206394|ref|YP_007486516.1| - 4.1 7.1 7.2 3.4 7.4 0.4 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Zn-ribbon_8 PF09723.5 gi|452206394|ref|YP_007486516.1| - 6.5 6.7 6.6 4.5 7.3 0.6 2.2 1 1 1 2 2 2 0 Zinc ribbon domain Ribosomal_S24e PF01282.14 gi|452206395|ref|YP_007486517.1| - 4.7e-27 93.6 0.2 5.6e-27 93.3 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein S24e DUF359 PF04019.7 gi|452206396|ref|YP_007486518.1| - 1.2e-39 134.4 0.1 1.4e-39 134.1 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF359) Spt4 PF06093.8 gi|452206397|ref|YP_007486519.1| - 1.1e-13 50.7 0.1 1.3e-13 50.5 0.1 1.1 1 0 0 1 1 1 1 Spt4/RpoE2 zinc finger TF_Zn_Ribbon PF08271.7 gi|452206397|ref|YP_007486519.1| - 0.0041 16.4 0.3 0.14 11.5 0.0 2.2 2 0 0 2 2 2 1 TFIIB zinc-binding zf-RING_4 PF14570.1 gi|452206397|ref|YP_007486519.1| - 0.0056 16.2 1.0 0.0082 15.7 0.7 1.2 1 0 0 1 1 1 1 RING/Ubox like zinc-binding domain HypA PF01155.14 gi|452206397|ref|YP_007486519.1| - 0.0056 16.3 1.3 0.0065 16.1 0.8 1.3 1 1 0 1 1 1 1 Hydrogenase expression/synthesis hypA family NOB1_Zn_bind PF08772.6 gi|452206397|ref|YP_007486519.1| - 0.0077 16.0 0.0 0.0077 16.0 0.0 1.2 1 0 0 1 1 1 1 Nin one binding (NOB1) Zn-ribbon like DZR PF12773.2 gi|452206397|ref|YP_007486519.1| - 0.014 15.1 0.4 0.02 14.6 0.3 1.3 1 0 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|452206397|ref|YP_007486519.1| - 0.016 14.4 1.5 0.061 12.5 1.4 1.6 1 1 1 2 2 2 0 zinc-ribbon domain Nudix_N_2 PF14803.1 gi|452206397|ref|YP_007486519.1| - 0.084 12.5 5.0 0.79 9.4 0.6 2.3 2 0 0 2 2 2 0 Nudix N-terminal zinc_ribbon_2 PF13240.1 gi|452206397|ref|YP_007486519.1| - 0.2 11.2 1.0 0.29 10.6 0.7 1.2 1 0 0 1 1 1 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|452206397|ref|YP_007486519.1| - 0.29 11.1 4.1 2.5 8.1 2.9 2.1 1 1 0 1 1 1 0 Zinc ribbon domain A2L_zn_ribbon PF08792.5 gi|452206397|ref|YP_007486519.1| - 0.39 10.2 2.6 0.94 9.0 1.8 1.6 1 1 0 1 1 1 0 A2L zinc ribbon domain S1 PF00575.18 gi|452206398|ref|YP_007486520.1| - 2e-16 59.7 0.5 4.1e-16 58.8 0.4 1.5 1 0 0 1 1 1 1 S1 RNA binding domain SHS2_Rpb7-N PF03876.12 gi|452206398|ref|YP_007486520.1| - 6.1e-14 51.8 0.0 9.8e-14 51.2 0.0 1.3 1 0 0 1 1 1 1 SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 Fcf1 PF04900.7 gi|452206399|ref|YP_007486521.1| - 1e-07 31.9 0.0 1.2e-07 31.7 0.0 1.1 1 0 0 1 1 1 1 Fcf1 PIN_4 PF13638.1 gi|452206399|ref|YP_007486521.1| - 0.0035 17.4 0.0 0.0041 17.2 0.0 1.2 1 0 0 1 1 1 1 PIN domain DUF188 PF02639.9 gi|452206399|ref|YP_007486521.1| - 0.013 14.9 0.0 0.025 14.0 0.0 1.4 1 1 0 1 1 1 0 Uncharacterized BCR, YaiI/YqxD family COG1671 GTP_EFTU PF00009.22 gi|452206400|ref|YP_007486522.1| - 1e-41 142.4 0.0 1.5e-41 141.9 0.0 1.2 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain eIF2_C PF09173.6 gi|452206400|ref|YP_007486522.1| - 5.1e-26 90.5 0.0 9.5e-26 89.6 0.0 1.4 1 0 0 1 1 1 1 Initiation factor eIF2 gamma, C terminal PduV-EutP PF10662.4 gi|452206400|ref|YP_007486522.1| - 0.0058 16.1 0.4 0.73 9.3 0.0 2.3 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation MMR_HSR1 PF01926.18 gi|452206400|ref|YP_007486522.1| - 0.011 15.6 0.0 0.022 14.7 0.0 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase Dynamin_N PF00350.18 gi|452206400|ref|YP_007486522.1| - 0.013 15.3 0.0 0.23 11.2 0.0 2.4 2 0 0 2 2 2 0 Dynamin family GTP_EFTU_D2 PF03144.20 gi|452206400|ref|YP_007486522.1| - 0.013 15.5 1.4 0.031 14.4 1.0 1.7 1 0 0 1 1 1 0 Elongation factor Tu domain 2 FeoB_N PF02421.13 gi|452206400|ref|YP_007486522.1| - 0.084 12.1 0.6 7.5 5.8 0.0 2.5 1 1 1 2 2 2 0 Ferrous iron transport protein B Miro PF08477.8 gi|452206400|ref|YP_007486522.1| - 0.12 12.8 0.0 0.45 11.0 0.0 2.0 1 1 0 1 1 1 0 Miro-like protein SRPRB PF09439.5 gi|452206400|ref|YP_007486522.1| - 0.13 11.4 0.0 11 5.2 0.0 2.2 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit KaiC PF06745.8 gi|452206401|ref|YP_007486523.1| - 1.4e-05 24.3 0.3 1.7e-05 24.0 0.2 1.1 1 0 0 1 1 1 1 KaiC Hexapep PF00132.19 gi|452206402|ref|YP_007486524.1| - 7.3e-11 41.0 1.6 4.1e-07 29.1 0.0 3.3 3 0 0 3 3 3 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|452206402|ref|YP_007486524.1| - 0.0062 16.0 5.6 0.016 14.7 0.3 3.2 3 1 0 3 3 3 1 Hexapeptide repeat of succinyl-transferase RPE65 PF03055.10 gi|452206403|ref|YP_007486525.1| - 2.7e-118 395.5 0.0 3.3e-118 395.3 0.0 1.0 1 0 0 1 1 1 1 Retinal pigment epithelial membrane protein TPR_11 PF13414.1 gi|452206404|ref|YP_007486526.1| - 2.9e-39 132.5 26.0 7.7e-15 54.2 1.8 3.1 1 1 3 4 4 4 4 TPR repeat TPR_1 PF00515.23 gi|452206404|ref|YP_007486526.1| - 3e-25 86.7 6.4 7.4e-09 34.8 0.0 5.1 5 0 0 5 5 5 4 Tetratricopeptide repeat TPR_2 PF07719.12 gi|452206404|ref|YP_007486526.1| - 7.5e-22 75.4 18.0 6.6e-06 25.6 0.1 5.2 5 0 0 5 5 5 5 Tetratricopeptide repeat TPR_16 PF13432.1 gi|452206404|ref|YP_007486526.1| - 3.3e-18 65.8 19.3 1.4e-07 31.9 0.9 3.4 2 1 1 3 3 3 3 Tetratricopeptide repeat TPR_8 PF13181.1 gi|452206404|ref|YP_007486526.1| - 1.4e-15 55.8 2.1 0.0034 17.0 0.0 5.1 5 0 0 5 5 5 2 Tetratricopeptide repeat TPR_12 PF13424.1 gi|452206404|ref|YP_007486526.1| - 3.2e-15 55.8 16.3 1e-07 31.7 3.0 3.3 1 1 2 3 3 3 3 Tetratricopeptide repeat TPR_14 PF13428.1 gi|452206404|ref|YP_007486526.1| - 4.2e-13 48.6 23.7 8e-05 22.9 0.3 5.1 1 1 4 5 5 5 5 Tetratricopeptide repeat TPR_17 PF13431.1 gi|452206404|ref|YP_007486526.1| - 4.8e-12 45.0 2.9 0.0023 18.0 0.0 4.4 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_9 PF13371.1 gi|452206404|ref|YP_007486526.1| - 2.6e-10 40.0 12.2 0.00012 21.8 0.6 3.6 1 1 3 4 4 4 3 Tetratricopeptide repeat TPR_7 PF13176.1 gi|452206404|ref|YP_007486526.1| - 7.3e-10 37.8 12.1 9.3e-05 21.9 0.1 5.0 4 1 1 5 5 5 2 Tetratricopeptide repeat TPR_19 PF14559.1 gi|452206404|ref|YP_007486526.1| - 7.9e-06 26.1 15.7 2.3e-05 24.6 1.3 3.3 1 1 1 3 3 3 3 Tetratricopeptide repeat TPR_10 PF13374.1 gi|452206404|ref|YP_007486526.1| - 1e-05 25.2 22.9 0.0063 16.4 0.6 4.5 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_6 PF13174.1 gi|452206404|ref|YP_007486526.1| - 8.9e-05 22.7 10.0 0.63 10.6 0.1 5.1 5 0 0 5 5 5 2 Tetratricopeptide repeat Apc3 PF12895.2 gi|452206404|ref|YP_007486526.1| - 0.00047 20.2 0.4 1.3 9.2 0.1 2.7 1 1 2 3 3 3 3 Anaphase-promoting complex, cyclosome, subunit 3 YfiO PF13525.1 gi|452206404|ref|YP_007486526.1| - 0.00062 19.2 0.6 0.0011 18.4 0.0 1.7 2 0 0 2 2 2 1 Outer membrane lipoprotein TPR_4 PF07721.9 gi|452206404|ref|YP_007486526.1| - 0.0037 17.5 1.4 0.0037 17.5 1.0 5.5 6 0 0 6 6 5 1 Tetratricopeptide repeat Apc5 PF12862.2 gi|452206404|ref|YP_007486526.1| - 0.008 15.9 0.4 0.42 10.4 0.4 2.9 2 1 1 3 3 3 1 Anaphase-promoting complex subunit 5 RPN7 PF10602.4 gi|452206404|ref|YP_007486526.1| - 0.042 13.2 0.4 0.19 11.0 0.1 2.3 1 1 1 2 2 2 0 26S proteasome subunit RPN7 TPR_18 PF13512.1 gi|452206404|ref|YP_007486526.1| - 0.054 13.5 0.2 0.17 11.9 0.0 1.7 1 1 1 2 2 2 0 Tetratricopeptide repeat TPR_21 PF09976.4 gi|452206404|ref|YP_007486526.1| - 0.51 10.2 12.0 0.057 13.3 3.9 2.3 2 1 0 2 2 2 0 Tetratricopeptide repeat TPR_5 PF12688.2 gi|452206404|ref|YP_007486526.1| - 0.88 9.6 7.8 0.83 9.7 0.6 2.8 1 1 0 2 2 2 0 Tetratrico peptide repeat MIT PF04212.13 gi|452206404|ref|YP_007486526.1| - 8.3 6.3 12.4 2.6 7.9 0.1 4.0 4 1 0 4 4 4 0 MIT (microtubule interacting and transport) domain DUF424 PF04242.8 gi|452206405|ref|YP_007486527.1| - 7.7e-29 99.5 0.0 8.5e-29 99.4 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF424) Peptidase_S49 PF01343.13 gi|452206406|ref|YP_007486528.1| - 6.1e-18 65.0 2.2 1.6e-10 40.9 0.2 2.3 2 0 0 2 2 2 2 Peptidase family S49 CLP_protease PF00574.18 gi|452206406|ref|YP_007486528.1| - 0.0053 16.4 0.3 0.05 13.2 0.1 2.0 2 0 0 2 2 2 1 Clp protease SDH_sah PF01972.11 gi|452206406|ref|YP_007486528.1| - 0.077 11.7 0.1 0.11 11.2 0.0 1.1 1 0 0 1 1 1 0 Serine dehydrogenase proteinase ABC_transp_aux PF09822.4 gi|452206407|ref|YP_007486529.1| - 0.011 15.1 0.0 0.017 14.6 0.0 1.2 1 0 0 1 1 1 0 ABC-type uncharacterized transport system HATPase_c PF02518.21 gi|452206408|ref|YP_007486530.1| - 2.3e-18 65.9 0.0 5.5e-18 64.6 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|452206408|ref|YP_007486530.1| - 4.5e-13 48.9 0.4 4.5e-13 48.9 0.3 3.1 2 1 1 3 3 3 1 His Kinase A (phospho-acceptor) domain GAF_3 PF13492.1 gi|452206408|ref|YP_007486530.1| - 1.4e-07 31.7 0.0 3.7e-07 30.2 0.0 1.8 1 0 0 1 1 1 1 GAF domain GAF_2 PF13185.1 gi|452206408|ref|YP_007486530.1| - 2.3e-06 28.1 0.8 5.2e-06 27.0 0.1 2.1 2 0 0 2 2 2 1 GAF domain HATPase_c_2 PF13581.1 gi|452206408|ref|YP_007486530.1| - 7.9e-05 22.4 0.2 0.011 15.4 0.0 2.5 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.1 gi|452206408|ref|YP_007486530.1| - 0.0063 16.1 0.0 0.018 14.6 0.0 1.8 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Polysacc_synt_C PF14667.1 gi|452206408|ref|YP_007486530.1| - 0.67 9.7 6.1 1.2 8.9 4.2 1.3 1 0 0 1 1 1 0 Polysaccharide biosynthesis C-terminal domain Aminotran_5 PF00266.14 gi|452206409|ref|YP_007486531.1| - 1e-147 491.7 0.0 1.2e-147 491.5 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.12 gi|452206409|ref|YP_007486531.1| - 2.1e-13 50.0 0.4 3.3e-13 49.4 0.3 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_1_2 PF00155.16 gi|452206409|ref|YP_007486531.1| - 8.6e-11 41.3 0.0 8.3e-10 38.1 0.0 1.9 2 0 0 2 2 2 1 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|452206409|ref|YP_007486531.1| - 1.4e-07 30.9 0.1 1.7e-07 30.6 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.15 gi|452206409|ref|YP_007486531.1| - 1.1e-05 23.9 0.0 4.1e-05 22.0 0.0 1.8 2 0 0 2 2 2 1 Cys/Met metabolism PLP-dependent enzyme Pyridoxal_deC PF00282.14 gi|452206409|ref|YP_007486531.1| - 1.6e-05 23.5 0.0 6.1e-05 21.6 0.0 1.8 2 0 0 2 2 2 1 Pyridoxal-dependent decarboxylase conserved domain SelA PF03841.8 gi|452206409|ref|YP_007486531.1| - 0.011 14.4 0.0 0.023 13.4 0.0 1.4 1 1 0 1 1 1 0 L-seryl-tRNA selenium transferase NifU_N PF01592.11 gi|452206410|ref|YP_007486532.1| - 9e-29 99.9 0.0 1e-28 99.8 0.0 1.0 1 0 0 1 1 1 1 NifU-like N terminal domain ApbA_C PF08546.6 gi|452206411|ref|YP_007486533.1| - 5.9e-34 116.7 0.2 5.9e-34 116.7 0.2 1.5 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA C terminal ApbA PF02558.11 gi|452206411|ref|YP_007486533.1| - 4.4e-30 104.1 0.0 7.4e-30 103.3 0.0 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA F420_oxidored PF03807.12 gi|452206411|ref|YP_007486533.1| - 0.021 15.2 1.1 0.051 14.0 0.0 2.1 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent DUF1188 PF06690.6 gi|452206411|ref|YP_007486533.1| - 0.058 12.5 0.0 0.082 12.0 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1188) AFOR_C PF01314.13 gi|452206412|ref|YP_007486534.1| - 5.1e-75 252.5 1.7 3.1e-74 249.9 1.2 1.9 1 1 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.10 gi|452206412|ref|YP_007486534.1| - 4.9e-55 186.0 0.0 7.5e-55 185.4 0.0 1.3 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain NifU PF01106.12 gi|452206413|ref|YP_007486535.1| - 1.9e-10 40.3 0.2 3.5e-10 39.4 0.1 1.5 1 1 0 1 1 1 1 NifU-like domain AdoHcyase PF05221.12 gi|452206414|ref|YP_007486536.1| - 3.9e-52 176.8 0.1 4.7e-52 176.5 0.0 1.0 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase AdoHcyase_NAD PF00670.16 gi|452206414|ref|YP_007486536.1| - 1.6e-49 167.8 3.5 1.8e-49 167.7 0.5 2.0 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|452206414|ref|YP_007486536.1| - 2.9e-10 39.5 0.1 5.9e-10 38.5 0.1 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.7 gi|452206414|ref|YP_007486536.1| - 2.2e-06 27.1 3.7 5e-06 25.9 0.1 2.7 3 0 0 3 3 3 1 Acetohydroxy acid isomeroreductase, catalytic domain TrkA_N PF02254.13 gi|452206414|ref|YP_007486536.1| - 0.009 15.9 0.8 0.014 15.3 0.1 1.8 2 0 0 2 2 2 1 TrkA-N domain AlaDh_PNT_C PF01262.16 gi|452206414|ref|YP_007486536.1| - 0.011 15.2 0.3 0.025 14.1 0.2 1.6 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain ELFV_dehydrog PF00208.16 gi|452206414|ref|YP_007486536.1| - 0.041 13.4 1.5 0.081 12.4 0.6 1.7 2 0 0 2 2 2 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase DUF4249 PF14054.1 gi|452206415|ref|YP_007486537.1| - 0.027 13.8 0.3 0.038 13.3 0.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4249) SepZ PF06066.6 gi|452206415|ref|YP_007486537.1| - 0.4 10.7 4.7 0.19 11.7 1.5 1.8 2 0 0 2 2 2 0 SepZ Amidohydro_1 PF01979.15 gi|452206416|ref|YP_007486538.1| - 1.9e-48 165.8 6.1 2.4e-48 165.5 4.2 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_4 PF13147.1 gi|452206416|ref|YP_007486538.1| - 7.1e-13 49.2 25.9 7.1e-13 49.2 18.0 1.8 2 0 0 2 2 2 1 Amidohydrolase Amidohydro_5 PF13594.1 gi|452206416|ref|YP_007486538.1| - 1.6e-09 37.3 0.0 9.3e-09 34.9 0.0 2.3 1 0 0 1 1 1 1 Amidohydrolase A_deaminase PF00962.17 gi|452206416|ref|YP_007486538.1| - 1.8e-06 27.1 0.0 3.6e-06 26.1 0.0 1.5 1 0 0 1 1 1 1 Adenosine/AMP deaminase 4HBT PF03061.17 gi|452206418|ref|YP_007486540.1| - 3.7e-05 23.7 0.2 5.7e-05 23.1 0.1 1.3 1 0 0 1 1 1 1 Thioesterase superfamily MaoC_dehydrat_N PF13452.1 gi|452206418|ref|YP_007486540.1| - 0.026 14.3 0.0 0.041 13.6 0.0 1.4 1 0 0 1 1 1 0 N-terminal half of MaoC dehydratase 4HBT_2 PF13279.1 gi|452206418|ref|YP_007486540.1| - 0.061 13.7 0.0 0.078 13.4 0.0 1.2 1 0 0 1 1 1 0 Thioesterase-like superfamily Prok-JAB PF14464.1 gi|452206419|ref|YP_007486541.1| - 0.0007 19.1 0.1 0.001 18.6 0.1 1.4 1 0 0 1 1 1 1 Prokaryotic homologs of the JAB domain SSF PF00474.12 gi|452206420|ref|YP_007486542.1| - 4.2e-29 101.4 32.9 4.2e-29 101.4 22.8 2.3 2 1 0 2 2 2 1 Sodium:solute symporter family Antitoxin-MazE PF04014.13 gi|452206421|ref|YP_007486543.1| - 5.4e-08 32.3 0.0 1.2e-07 31.2 0.0 1.6 1 0 0 1 1 1 1 Antidote-toxin recognition MazE PhoU PF01895.14 gi|452206421|ref|YP_007486543.1| - 0.00011 22.5 0.0 0.041 14.3 0.0 2.4 2 0 0 2 2 2 2 PhoU domain MarR_2 PF12802.2 gi|452206423|ref|YP_007486545.1| - 6e-07 29.0 0.0 8.6e-07 28.5 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|452206423|ref|YP_007486545.1| - 3.9e-05 23.3 0.0 6.3e-05 22.7 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|452206423|ref|YP_007486545.1| - 5.4e-05 22.8 0.0 8.8e-05 22.1 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|452206423|ref|YP_007486545.1| - 0.00012 21.6 0.1 0.00026 20.5 0.0 1.6 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_23 PF13384.1 gi|452206423|ref|YP_007486545.1| - 0.0002 20.8 0.0 0.00037 20.0 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain HTH_5 PF01022.15 gi|452206423|ref|YP_007486545.1| - 0.00076 19.0 0.0 0.0013 18.3 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR PF01047.17 gi|452206423|ref|YP_007486545.1| - 0.00083 19.0 0.0 0.0017 17.9 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|452206423|ref|YP_007486545.1| - 0.0016 18.7 0.0 0.0028 17.9 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_24 PF13412.1 gi|452206423|ref|YP_007486545.1| - 0.0057 16.0 0.0 0.013 14.8 0.0 1.7 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding Fe_dep_repress PF01325.14 gi|452206423|ref|YP_007486545.1| - 0.013 15.4 0.0 0.022 14.6 0.0 1.3 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_11 PF08279.7 gi|452206423|ref|YP_007486545.1| - 0.017 14.7 0.0 0.025 14.2 0.0 1.3 1 0 0 1 1 1 0 HTH domain DUF742 PF05331.6 gi|452206423|ref|YP_007486545.1| - 0.027 14.0 0.0 0.041 13.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF742) Penicillinase_R PF03965.11 gi|452206423|ref|YP_007486545.1| - 0.11 12.5 0.0 0.15 12.1 0.0 1.3 1 0 0 1 1 1 0 Penicillinase repressor SecY PF00344.15 gi|452206425|ref|YP_007486547.1| - 2e-94 316.3 15.4 2.4e-94 316.1 10.7 1.1 1 0 0 1 1 1 1 SecY translocase Plug_translocon PF10559.4 gi|452206425|ref|YP_007486547.1| - 2.1e-09 36.7 1.5 5.5e-09 35.3 1.1 1.8 1 0 0 1 1 1 1 Plug domain of Sec61p Ribosomal_L18e PF00828.14 gi|452206426|ref|YP_007486548.1| - 1.6e-27 96.4 0.2 1.6e-27 96.4 0.1 1.4 1 1 1 2 2 2 1 Ribosomal protein L18e/L15 Strep_his_triad PF04270.8 gi|452206426|ref|YP_007486548.1| - 0.08 12.6 2.0 0.19 11.4 1.4 1.8 1 1 0 1 1 1 0 Streptococcal histidine triad protein Ribosomal_L30 PF00327.15 gi|452206427|ref|YP_007486549.1| - 9.5e-12 44.3 0.0 1.5e-11 43.6 0.0 1.4 1 0 0 1 1 1 1 Ribosomal protein L30p/L7e Phage_T4_gp19 PF06841.7 gi|452206427|ref|YP_007486549.1| - 0.083 12.5 0.0 0.098 12.2 0.0 1.2 1 0 0 1 1 1 0 T4-like virus tail tube protein gp19 Ribosomal_S5 PF00333.15 gi|452206428|ref|YP_007486550.1| - 7e-28 96.1 0.8 1.3e-27 95.3 0.6 1.4 1 0 0 1 1 1 1 Ribosomal protein S5, N-terminal domain Ribosomal_S5_C PF03719.10 gi|452206428|ref|YP_007486550.1| - 2.5e-22 77.9 0.0 3.7e-22 77.4 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein S5, C-terminal domain Ribosomal_L18p PF00861.17 gi|452206429|ref|YP_007486551.1| - 1.5e-31 109.0 0.0 2e-31 108.6 0.0 1.2 1 0 0 1 1 1 1 Ribosomal L18p/L5e family Ribosomal_L19e PF01280.15 gi|452206430|ref|YP_007486552.1| - 1.8e-56 190.0 4.9 1.9e-56 189.9 3.4 1.0 1 0 0 1 1 1 1 Ribosomal protein L19e SHOCT PF09851.4 gi|452206430|ref|YP_007486552.1| - 0.0029 16.9 2.8 0.0029 16.9 1.9 2.8 3 0 0 3 3 3 1 Short C-terminal domain SAND PF01342.16 gi|452206430|ref|YP_007486552.1| - 0.042 13.5 0.4 0.086 12.5 0.2 1.6 2 0 0 2 2 2 0 SAND domain HTH_17 PF12728.2 gi|452206430|ref|YP_007486552.1| - 0.069 13.4 0.0 3.8 7.8 0.0 3.0 2 1 1 3 3 3 0 Helix-turn-helix domain Ribosomal_L32e PF01655.13 gi|452206431|ref|YP_007486553.1| - 9e-36 122.2 1.0 7.2e-35 119.3 0.3 2.0 2 0 0 2 2 2 1 Ribosomal protein L32 HHH_5 PF14520.1 gi|452206431|ref|YP_007486553.1| - 4.1e-18 65.2 7.0 6.8e-15 54.9 1.2 2.6 3 0 0 3 3 3 2 Helix-hairpin-helix domain HHH PF00633.18 gi|452206431|ref|YP_007486553.1| - 7.8e-07 28.4 0.7 0.041 13.6 0.0 3.1 3 0 0 3 3 3 2 Helix-hairpin-helix motif DNA_pol_lambd_f PF10391.4 gi|452206431|ref|YP_007486553.1| - 2.3e-06 27.0 0.0 6.6e-06 25.5 0.0 1.8 1 1 0 1 1 1 1 Fingers domain of DNA polymerase lambda HHH_2 PF12826.2 gi|452206431|ref|YP_007486553.1| - 5e-06 26.2 0.5 1.2e-05 25.0 0.3 1.6 1 1 0 1 1 1 1 Helix-hairpin-helix motif Cdd1 PF11731.3 gi|452206431|ref|YP_007486553.1| - 0.0005 19.9 0.0 0.0053 16.6 0.0 2.5 2 1 1 3 3 3 1 Pathogenicity locus Ribosomal_S13 PF00416.17 gi|452206431|ref|YP_007486553.1| - 0.0016 18.9 0.4 0.0079 16.6 0.1 2.2 2 1 0 2 2 2 1 Ribosomal protein S13/S18 HHH_8 PF14716.1 gi|452206431|ref|YP_007486553.1| - 0.0027 17.8 0.1 0.14 12.3 0.0 2.4 2 0 0 2 2 2 1 Helix-hairpin-helix domain HHH_3 PF12836.2 gi|452206431|ref|YP_007486553.1| - 0.0041 17.0 0.1 0.47 10.4 0.0 2.4 1 1 1 2 2 2 1 Helix-hairpin-helix motif RNA_pol_A_CTD PF03118.10 gi|452206431|ref|YP_007486553.1| - 0.008 15.5 0.0 0.014 14.7 0.0 1.4 1 0 0 1 1 1 1 Bacterial RNA polymerase, alpha chain C terminal domain DUF4332 PF14229.1 gi|452206431|ref|YP_007486553.1| - 0.016 15.1 0.0 0.035 14.0 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4332) Sec63 PF02889.11 gi|452206431|ref|YP_007486553.1| - 0.062 12.5 0.0 0.077 12.2 0.0 1.1 1 0 0 1 1 1 0 Sec63 Brl domain Transposase_20 PF02371.11 gi|452206431|ref|YP_007486553.1| - 0.15 12.2 0.0 0.7 10.0 0.0 2.0 2 0 0 2 2 2 0 Transposase IS116/IS110/IS902 family Ribosomal_L6 PF00347.18 gi|452206432|ref|YP_007486554.1| - 7.3e-21 74.4 0.1 9.8e-11 41.9 0.0 2.1 2 0 0 2 2 2 2 Ribosomal protein L6 Ribosomal_S8 PF00410.14 gi|452206433|ref|YP_007486555.1| - 4.3e-21 75.1 0.0 6e-21 74.6 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein S8 Ribosomal_S14 PF00253.16 gi|452206434|ref|YP_007486556.1| - 6.6e-14 51.0 2.2 7.5e-14 50.8 1.5 1.1 1 0 0 1 1 1 1 Ribosomal protein S14p/S29e DUF4428 PF14471.1 gi|452206434|ref|YP_007486556.1| - 0.0029 17.3 0.1 0.0038 16.9 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4428) Ribosomal_L37ae PF01780.14 gi|452206434|ref|YP_007486556.1| - 0.032 14.0 1.1 0.039 13.8 0.7 1.2 1 0 0 1 1 1 0 Ribosomal L37ae protein family DUF2318 PF10080.4 gi|452206434|ref|YP_007486556.1| - 0.052 13.3 0.3 0.059 13.1 0.2 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2318) Ribosomal_L5_C PF00673.16 gi|452206435|ref|YP_007486557.1| - 1.9e-22 78.7 0.0 3e-22 78.1 0.0 1.3 1 0 0 1 1 1 1 ribosomal L5P family C-terminus Ribosomal_L5 PF00281.14 gi|452206435|ref|YP_007486557.1| - 2.1e-14 53.0 0.0 3.5e-14 52.2 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L5 Ribosomal_S4e PF00900.15 gi|452206436|ref|YP_007486558.1| - 7.6e-25 86.3 0.0 1.4e-24 85.5 0.0 1.4 1 0 0 1 1 1 1 Ribosomal family S4e RS4NT PF08071.7 gi|452206436|ref|YP_007486558.1| - 4.1e-12 45.7 0.4 7.6e-12 44.8 0.3 1.4 1 0 0 1 1 1 1 RS4NT (NUC023) domain KOW PF00467.24 gi|452206436|ref|YP_007486558.1| - 0.00065 19.3 0.0 0.0022 17.6 0.0 2.0 1 0 0 1 1 1 1 KOW motif S4 PF01479.20 gi|452206436|ref|YP_007486558.1| - 0.0016 17.8 0.0 0.0026 17.1 0.0 1.4 1 0 0 1 1 1 1 S4 domain Peptidase_S24 PF00717.18 gi|452206436|ref|YP_007486558.1| - 0.087 12.4 0.0 0.27 10.8 0.0 1.8 2 0 0 2 2 2 0 Peptidase S24-like KOW PF00467.24 gi|452206437|ref|YP_007486559.1| - 1.3e-05 24.7 0.3 2.6e-05 23.7 0.2 1.6 1 0 0 1 1 1 1 KOW motif YlqD PF11068.3 gi|452206437|ref|YP_007486559.1| - 0.016 15.2 0.5 5.4 7.0 0.0 2.1 1 1 0 2 2 2 0 YlqD protein Band_7 PF01145.20 gi|452206437|ref|YP_007486559.1| - 0.087 12.7 0.7 0.16 11.8 0.5 1.4 1 1 0 1 1 1 0 SPFH domain / Band 7 family Ribosomal_L14 PF00238.14 gi|452206438|ref|YP_007486560.1| - 9.1e-35 119.0 0.0 1e-34 118.9 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L14p/L23e Ribosomal_S17 PF00366.15 gi|452206439|ref|YP_007486561.1| - 2.8e-26 91.3 2.0 3.4e-26 91.0 1.4 1.1 1 0 0 1 1 1 1 Ribosomal protein S17 UPF0086 PF01868.11 gi|452206440|ref|YP_007486562.1| - 8.9e-25 86.1 0.0 1e-24 85.9 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function UPF0086 GETHR PF05671.6 gi|452206440|ref|YP_007486562.1| - 0.12 11.5 1.2 0.28 10.3 0.2 2.0 2 0 0 2 2 2 0 GETHR pentapeptide repeat (5 copies) Ribosomal_L29 PF00831.18 gi|452206441|ref|YP_007486563.1| - 4.1e-18 64.8 0.3 4.5e-18 64.6 0.2 1.0 1 0 0 1 1 1 1 Ribosomal L29 protein Med9 PF07544.8 gi|452206441|ref|YP_007486563.1| - 0.026 14.2 2.0 0.07 12.8 0.3 1.9 1 1 1 2 2 2 0 RNA polymerase II transcription mediator complex subunit 9 RPAP1_N PF08621.5 gi|452206441|ref|YP_007486563.1| - 2.4 7.8 5.2 0.85 9.2 1.8 1.6 2 0 0 2 2 2 0 RPAP1-like, N-terminal KH_2 PF07650.12 gi|452206442|ref|YP_007486564.1| - 1.6e-16 59.5 0.0 3.3e-16 58.6 0.0 1.5 1 0 0 1 1 1 1 KH domain Ribosomal_S3_C PF00189.15 gi|452206442|ref|YP_007486564.1| - 7.9e-16 58.0 0.2 1.2e-15 57.4 0.1 1.3 1 0 0 1 1 1 1 Ribosomal protein S3, C-terminal domain KH_1 PF00013.24 gi|452206442|ref|YP_007486564.1| - 0.00021 20.8 0.5 0.00074 19.1 0.1 2.1 2 0 0 2 2 2 1 KH domain KH_3 PF13014.1 gi|452206442|ref|YP_007486564.1| - 0.013 15.1 3.1 0.025 14.2 0.9 2.3 2 0 0 2 2 2 0 KH domain KH_4 PF13083.1 gi|452206442|ref|YP_007486564.1| - 0.15 11.7 2.2 0.19 11.3 0.1 2.2 2 0 0 2 2 2 0 KH domain Ribosomal_L22 PF00237.14 gi|452206443|ref|YP_007486565.1| - 2.2e-25 88.5 0.0 2.6e-25 88.3 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L22p/L17e Ribosomal_S19 PF00203.16 gi|452206444|ref|YP_007486566.1| - 2e-27 94.5 0.0 3.3e-27 93.9 0.0 1.4 1 0 0 1 1 1 1 Ribosomal protein S19 Ribosomal_L2_C PF03947.13 gi|452206445|ref|YP_007486567.1| - 5.6e-45 152.3 1.1 7.4e-45 151.9 0.7 1.2 1 0 0 1 1 1 1 Ribosomal Proteins L2, C-terminal domain Ribosomal_L2 PF00181.18 gi|452206445|ref|YP_007486567.1| - 3.9e-15 55.5 0.0 8.3e-15 54.5 0.0 1.6 1 0 0 1 1 1 1 Ribosomal Proteins L2, RNA binding domain Ribosomal_L23 PF00276.15 gi|452206446|ref|YP_007486568.1| - 1.4e-16 60.1 0.1 2.5e-16 59.3 0.1 1.4 1 1 0 1 1 1 1 Ribosomal protein L23 Flagellin_IN PF07196.8 gi|452206446|ref|YP_007486568.1| - 0.037 14.0 2.0 0.037 13.9 0.4 1.7 2 0 0 2 2 2 0 Flagellin hook IN motif P2 PF07194.6 gi|452206446|ref|YP_007486568.1| - 0.053 13.3 0.5 0.39 10.5 0.1 1.9 1 1 1 2 2 2 0 P2 response regulator binding domain Ribosomal_L4 PF00573.17 gi|452206447|ref|YP_007486569.1| - 6.1e-41 139.9 0.2 7e-41 139.7 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L4/L1 family HalX PF08663.5 gi|452206447|ref|YP_007486569.1| - 0.055 13.4 0.1 0.78 9.7 0.0 2.5 2 0 0 2 2 2 0 HalX domain Ribosomal_L3 PF00297.17 gi|452206448|ref|YP_007486570.1| - 1.5e-90 303.1 0.0 2.4e-90 302.4 0.0 1.3 2 0 0 2 2 2 1 Ribosomal protein L3 Methyltrn_RNA_3 PF02598.12 gi|452206449|ref|YP_007486571.1| - 2.3e-51 174.8 0.0 2.8e-51 174.6 0.0 1.1 1 0 0 1 1 1 1 Putative RNA methyltransferase DUF77 PF01910.12 gi|452206451|ref|YP_007486573.1| - 8.5e-22 76.6 0.5 9.9e-22 76.4 0.4 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF77 KorB PF08535.5 gi|452206451|ref|YP_007486573.1| - 0.1 12.7 0.1 0.29 11.3 0.0 1.8 1 1 1 2 2 2 0 KorB domain DUF2150 PF09920.4 gi|452206452|ref|YP_007486574.1| - 1.3e-66 223.8 6.9 1.5e-66 223.6 4.8 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2150) DUF3368 PF11848.3 gi|452206455|ref|YP_007486577.1| - 1.6e-10 40.3 0.1 5e-10 38.7 0.0 1.9 2 1 0 2 2 2 1 Domain of unknown function (DUF3368) PIN PF01850.16 gi|452206455|ref|YP_007486577.1| - 0.00014 22.1 1.0 0.0002 21.6 0.4 1.4 2 0 0 2 2 2 1 PIN domain UPF0175 PF03683.8 gi|452206456|ref|YP_007486578.1| - 1.2e-09 37.5 0.6 1.2e-09 37.5 0.4 1.6 2 0 0 2 2 2 1 Uncharacterised protein family (UPF0175) RHH_1 PF01402.16 gi|452206456|ref|YP_007486578.1| - 0.00041 20.1 2.5 0.00051 19.8 0.7 2.0 3 0 0 3 3 3 1 Ribbon-helix-helix protein, copG family HTH_psq PF05225.11 gi|452206456|ref|YP_007486578.1| - 0.022 14.2 0.0 0.055 13.0 0.0 1.7 1 0 0 1 1 1 0 helix-turn-helix, Psq domain DUF433 PF04255.9 gi|452206457|ref|YP_007486579.1| - 2.5e-09 36.4 0.0 3.9e-09 35.7 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF433) FbpA PF05833.6 gi|452206457|ref|YP_007486579.1| - 0.051 12.1 0.1 0.055 12.0 0.1 1.0 1 0 0 1 1 1 0 Fibronectin-binding protein A N-terminus (FbpA) Pil1 PF13805.1 gi|452206457|ref|YP_007486579.1| - 0.068 12.3 0.0 0.073 12.1 0.0 1.1 1 0 0 1 1 1 0 Eisosome component PIL1 Mut7-C PF01927.11 gi|452206458|ref|YP_007486580.1| - 0.0019 18.2 0.0 0.0021 18.0 0.0 1.1 1 0 0 1 1 1 1 Mut7-C RNAse domain NYN PF01936.13 gi|452206458|ref|YP_007486580.1| - 0.051 13.8 0.1 0.15 12.2 0.1 1.9 1 1 0 1 1 1 0 NYN domain HMG_CoA_synt_N PF01154.12 gi|452206459|ref|YP_007486581.1| - 2.7e-27 95.4 0.0 3.7e-27 94.9 0.0 1.2 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A synthase N terminal HMG_CoA_synt_C PF08540.5 gi|452206459|ref|YP_007486581.1| - 1.4e-17 64.0 0.0 2.3e-17 63.4 0.0 1.2 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A synthase C terminal Eaf7 PF07904.8 gi|452206459|ref|YP_007486581.1| - 0.14 12.1 0.1 0.28 11.1 0.1 1.5 1 0 0 1 1 1 0 Chromatin modification-related protein EAF7 MCPsignal PF00015.16 gi|452206460|ref|YP_007486582.1| - 4e-13 49.4 12.7 4e-13 49.4 8.8 3.2 1 1 2 3 3 3 1 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.20 gi|452206460|ref|YP_007486582.1| - 6.9e-13 48.5 17.7 2.6e-09 37.1 0.2 4.5 3 2 0 3 3 3 2 HAMP domain DUF4201 PF13870.1 gi|452206460|ref|YP_007486582.1| - 0.012 15.0 0.5 2.3 7.6 0.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4201) RPW8 PF05659.6 gi|452206460|ref|YP_007486582.1| - 0.082 12.4 2.2 2.1 7.8 0.0 3.0 3 0 0 3 3 3 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 TMF_TATA_bd PF12325.3 gi|452206460|ref|YP_007486582.1| - 0.088 12.5 0.5 0.088 12.5 0.3 3.2 2 1 1 3 3 3 0 TATA element modulatory factor 1 TATA binding WEMBL PF05701.6 gi|452206460|ref|YP_007486582.1| - 0.18 10.2 28.9 0.69 8.3 0.5 2.1 2 0 0 2 2 2 0 Weak chloroplast movement under blue light NYD-SP28 PF14772.1 gi|452206460|ref|YP_007486582.1| - 0.28 11.2 0.1 0.28 11.2 0.1 3.3 3 1 1 4 4 3 0 Sperm tail Prefoldin_2 PF01920.15 gi|452206460|ref|YP_007486582.1| - 0.3 10.8 15.2 11 5.8 0.9 4.0 1 1 2 3 3 3 0 Prefoldin subunit DUF3417 PF11897.3 gi|452206460|ref|YP_007486582.1| - 0.3 11.0 4.0 0.18 11.7 0.2 2.4 1 1 0 2 2 2 0 Protein of unknown function (DUF3417) Seryl_tRNA_N PF02403.17 gi|452206460|ref|YP_007486582.1| - 0.73 9.8 15.5 2.1 8.3 4.7 2.8 1 1 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain CorA PF01544.13 gi|452206460|ref|YP_007486582.1| - 0.74 8.7 11.9 4.6 6.1 3.8 2.7 2 1 0 2 2 2 0 CorA-like Mg2+ transporter protein AAA_13 PF13166.1 gi|452206460|ref|YP_007486582.1| - 0.76 8.1 16.7 3.2 6.1 11.6 1.8 1 1 0 1 1 1 0 AAA domain Sec34 PF04136.10 gi|452206460|ref|YP_007486582.1| - 0.8 9.3 7.2 0.58 9.8 0.5 2.7 1 1 2 3 3 3 0 Sec34-like family eIF3_N PF09440.5 gi|452206460|ref|YP_007486582.1| - 0.89 9.7 15.5 0.74 9.9 0.2 2.9 2 1 1 3 3 3 0 eIF3 subunit 6 N terminal domain DUF948 PF06103.6 gi|452206460|ref|YP_007486582.1| - 1.1 9.2 12.9 0.84 9.5 0.4 3.7 2 1 1 3 3 3 0 Bacterial protein of unknown function (DUF948) Spectrin PF00435.16 gi|452206460|ref|YP_007486582.1| - 1.7 8.9 14.4 1.1 9.5 1.0 3.4 2 1 2 4 4 4 0 Spectrin repeat TPR_MLP1_2 PF07926.7 gi|452206460|ref|YP_007486582.1| - 1.8 8.2 22.4 8.5 6.1 0.3 3.0 2 1 0 2 2 2 0 TPR/MLP1/MLP2-like protein Atg14 PF10186.4 gi|452206460|ref|YP_007486582.1| - 3.3 6.5 7.6 9.6 5.0 3.4 2.0 2 0 0 2 2 2 0 UV radiation resistance protein and autophagy-related subunit 14 DUF972 PF06156.8 gi|452206460|ref|YP_007486582.1| - 4.4 7.6 9.8 5.7 7.3 0.1 3.2 2 1 0 2 2 2 0 Protein of unknown function (DUF972) DUF3080 PF11279.3 gi|452206460|ref|YP_007486582.1| - 8.6 5.4 10.6 4.6 6.2 5.4 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF3080) Laminin_II PF06009.7 gi|452206460|ref|YP_007486582.1| - 9.2 6.0 18.7 4.7 6.9 1.7 3.4 1 1 2 4 4 4 0 Laminin Domain II Phage_integrase PF00589.17 gi|452206461|ref|YP_007486583.1| - 1.4e-23 83.4 0.1 4.3e-22 78.5 0.1 2.2 1 1 0 1 1 1 1 Phage integrase family KilA-N PF04383.8 gi|452206461|ref|YP_007486583.1| - 0.0067 16.0 0.0 0.017 14.7 0.0 1.6 1 0 0 1 1 1 1 KilA-N domain RHH_1 PF01402.16 gi|452206462|ref|YP_007486584.1| - 0.0014 18.3 2.6 0.006 16.4 0.1 3.0 3 0 0 3 3 3 1 Ribbon-helix-helix protein, copG family HTH_24 PF13412.1 gi|452206462|ref|YP_007486584.1| - 0.0017 17.6 0.0 0.0031 16.8 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding RTBV_P46 PF06216.6 gi|452206462|ref|YP_007486584.1| - 0.003 16.4 0.2 0.0045 15.8 0.1 1.3 1 1 0 1 1 1 1 Rice tungro bacilliform virus P46 protein Seryl_tRNA_N PF02403.17 gi|452206462|ref|YP_007486584.1| - 0.0066 16.4 1.9 0.55 10.2 0.1 2.2 2 0 0 2 2 2 1 Seryl-tRNA synthetase N-terminal domain Tn7_Tnp_TnsA_C PF08721.6 gi|452206462|ref|YP_007486584.1| - 0.011 15.7 0.4 0.18 11.8 0.0 2.7 2 1 0 2 2 2 0 TnsA endonuclease C terminal DUF4407 PF14362.1 gi|452206462|ref|YP_007486584.1| - 0.013 14.4 2.3 0.015 14.2 1.6 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) HTH_20 PF12840.2 gi|452206462|ref|YP_007486584.1| - 0.02 14.6 0.0 0.042 13.6 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Sulfolobus_pRN PF05584.6 gi|452206462|ref|YP_007486584.1| - 0.027 14.4 0.0 0.063 13.2 0.0 1.5 1 0 0 1 1 1 0 Sulfolobus plasmid regulatory protein MCPsignal PF00015.16 gi|452206462|ref|YP_007486584.1| - 0.031 13.8 3.7 0.041 13.4 2.5 1.3 1 0 0 1 1 1 0 Methyl-accepting chemotaxis protein (MCP) signalling domain PMC2NT PF08066.7 gi|452206462|ref|YP_007486584.1| - 0.039 14.2 1.6 0.9 9.8 0.1 2.7 1 1 2 3 3 3 0 PMC2NT (NUC016) domain Fez1 PF06818.10 gi|452206462|ref|YP_007486584.1| - 0.054 13.5 2.0 0.064 13.2 1.4 1.2 1 0 0 1 1 1 0 Fez1 Phage_rep_org_N PF09681.5 gi|452206462|ref|YP_007486584.1| - 0.077 12.5 0.1 0.16 11.5 0.1 1.5 1 0 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) HTH_11 PF08279.7 gi|452206462|ref|YP_007486584.1| - 0.079 12.6 0.0 0.25 11.0 0.0 1.8 1 0 0 1 1 1 0 HTH domain AAA_13 PF13166.1 gi|452206462|ref|YP_007486584.1| - 0.082 11.3 2.7 0.091 11.2 1.9 1.0 1 0 0 1 1 1 0 AAA domain HTH_5 PF01022.15 gi|452206462|ref|YP_007486584.1| - 0.11 12.2 0.0 0.22 11.1 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family MarR PF01047.17 gi|452206462|ref|YP_007486584.1| - 0.12 12.0 0.0 0.21 11.3 0.0 1.3 1 0 0 1 1 1 0 MarR family DUF1664 PF07889.7 gi|452206462|ref|YP_007486584.1| - 0.12 12.1 0.8 0.22 11.3 0.3 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) ING PF12998.2 gi|452206462|ref|YP_007486584.1| - 0.17 12.1 1.7 0.21 11.8 0.2 1.8 2 0 0 2 2 2 0 Inhibitor of growth proteins N-terminal histone-binding Apolipoprotein PF01442.13 gi|452206462|ref|YP_007486584.1| - 0.28 10.6 4.9 6.6 6.1 1.2 2.1 1 1 1 2 2 2 0 Apolipoprotein A1/A4/E domain NPV_P10 PF05531.7 gi|452206462|ref|YP_007486584.1| - 0.33 11.2 2.6 2.5 8.4 1.8 2.3 1 1 0 1 1 1 0 Nucleopolyhedrovirus P10 protein DUF848 PF05852.6 gi|452206462|ref|YP_007486584.1| - 1.2 8.9 7.1 1.9 8.3 0.8 2.1 1 1 1 2 2 2 0 Gammaherpesvirus protein of unknown function (DUF848) NTP_transf_4 PF13562.1 gi|452206463|ref|YP_007486585.1| - 0.13 11.9 0.0 0.21 11.2 0.0 1.4 1 0 0 1 1 1 0 Sugar nucleotidyl transferase DDE_Tnp_IS66 PF03050.9 gi|452206464|ref|YP_007486586.1| - 5.4e-54 183.2 0.2 9.5e-54 182.4 0.1 1.4 1 0 0 1 1 1 1 Transposase IS66 family zf-IS66 PF13005.2 gi|452206464|ref|YP_007486586.1| - 0.0003 20.7 7.3 0.0009 19.1 5.1 1.9 1 0 0 1 1 1 1 zinc-finger binding domain of transposase IS66 Transposase_mut PF00872.13 gi|452206464|ref|YP_007486586.1| - 0.018 13.6 0.0 0.034 12.6 0.0 1.4 1 0 0 1 1 1 0 Transposase, Mutator family DDE_Tnp_IS240 PF13610.1 gi|452206464|ref|YP_007486586.1| - 0.1 12.5 0.2 0.32 10.9 0.1 1.9 1 1 0 1 1 1 0 DDE domain DivIC PF04977.10 gi|452206464|ref|YP_007486586.1| - 0.12 11.9 0.1 0.12 11.9 0.1 2.2 3 0 0 3 3 3 0 Septum formation initiator DUF972 PF06156.8 gi|452206464|ref|YP_007486586.1| - 0.12 12.7 3.2 0.11 12.8 0.8 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF972) NYD-SP28_assoc PF14775.1 gi|452206464|ref|YP_007486586.1| - 0.14 11.8 2.3 0.45 10.2 1.6 1.9 1 0 0 1 1 1 0 Sperm tail C-terminal domain HALZ PF02183.13 gi|452206464|ref|YP_007486586.1| - 1.2 8.9 6.1 1.8 8.3 2.6 2.3 2 0 0 2 2 2 0 Homeobox associated leucine zipper DDE_3 PF13358.1 gi|452206465|ref|YP_007486587.1| - 2.6e-22 79.1 0.0 4.7e-22 78.3 0.0 1.4 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_33 PF13592.1 gi|452206465|ref|YP_007486587.1| - 4.9e-17 61.2 1.4 4.8e-16 58.0 0.1 3.1 4 0 0 4 4 4 1 Winged helix-turn helix HTH_29 PF13551.1 gi|452206465|ref|YP_007486587.1| - 1.3e-15 57.4 0.0 3.3e-15 56.1 0.0 1.7 2 0 0 2 2 2 1 Winged helix-turn helix HTH_32 PF13565.1 gi|452206465|ref|YP_007486587.1| - 8.1e-09 36.1 2.5 6.3e-08 33.3 0.2 3.3 2 1 1 3 3 3 1 Homeodomain-like domain HTH_23 PF13384.1 gi|452206465|ref|YP_007486587.1| - 1.9e-06 27.3 0.2 6e-06 25.7 0.0 1.9 2 0 0 2 2 2 1 Homeodomain-like domain rve PF00665.21 gi|452206465|ref|YP_007486587.1| - 5.1e-05 23.3 0.0 0.00053 20.0 0.0 2.3 2 0 0 2 2 2 1 Integrase core domain HTH_28 PF13518.1 gi|452206465|ref|YP_007486587.1| - 0.0002 21.2 0.0 0.0011 18.8 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_Tnp_1 PF01527.15 gi|452206465|ref|YP_007486587.1| - 0.00059 19.7 0.0 0.0012 18.7 0.0 1.5 1 0 0 1 1 1 1 Transposase HTH_38 PF13936.1 gi|452206465|ref|YP_007486587.1| - 0.0061 16.0 0.0 0.03 13.8 0.0 2.2 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_30 PF13556.1 gi|452206465|ref|YP_007486587.1| - 0.013 15.1 0.0 0.026 14.1 0.0 1.4 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain DDE_1 PF03184.14 gi|452206465|ref|YP_007486587.1| - 0.038 13.1 0.0 0.094 11.8 0.0 1.6 1 0 0 1 1 1 0 DDE superfamily endonuclease DDE_Tnp_ISAZ013 PF07592.6 gi|452206465|ref|YP_007486587.1| - 0.058 12.1 0.0 7.7 5.1 0.0 2.2 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain HTH_21 PF13276.1 gi|452206465|ref|YP_007486587.1| - 0.074 13.0 0.0 0.18 11.8 0.0 1.5 1 0 0 1 1 1 0 HTH-like domain Sigma70_r4_2 PF08281.7 gi|452206465|ref|YP_007486587.1| - 0.12 11.8 0.0 0.32 10.5 0.0 1.7 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_Tnp_ISL3 PF13542.1 gi|452206465|ref|YP_007486587.1| - 0.13 11.5 0.0 0.91 8.7 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 MarR PF01047.17 gi|452206465|ref|YP_007486587.1| - 0.14 11.8 0.0 0.61 9.8 0.0 2.0 2 0 0 2 2 2 0 MarR family DDE_3 PF13358.1 gi|452206466|ref|YP_007486588.1| - 3.1e-25 88.6 0.0 5.1e-25 87.9 0.0 1.4 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_33 PF13592.1 gi|452206466|ref|YP_007486588.1| - 2.9e-15 55.5 0.9 1.2e-14 53.6 0.1 2.4 3 0 0 3 3 3 1 Winged helix-turn helix HTH_29 PF13551.1 gi|452206466|ref|YP_007486588.1| - 1.1e-10 41.6 0.0 4e-10 39.8 0.0 1.9 2 0 0 2 2 2 1 Winged helix-turn helix rve PF00665.21 gi|452206466|ref|YP_007486588.1| - 2.9e-08 33.8 0.0 7.8e-07 29.2 0.0 2.5 1 1 0 2 2 2 1 Integrase core domain HTH_32 PF13565.1 gi|452206466|ref|YP_007486588.1| - 1.1e-06 29.3 0.7 3e-06 27.9 0.1 2.1 2 0 0 2 2 2 1 Homeodomain-like domain DDE_Tnp_ISAZ013 PF07592.6 gi|452206466|ref|YP_007486588.1| - 0.018 13.8 0.0 1.4 7.6 0.0 2.8 2 1 1 3 3 3 0 Rhodopirellula transposase DDE domain HTH_28 PF13518.1 gi|452206466|ref|YP_007486588.1| - 0.035 14.1 0.1 2.2 8.3 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_23 PF13384.1 gi|452206466|ref|YP_007486588.1| - 0.037 13.6 0.0 0.11 12.1 0.0 1.8 2 0 0 2 2 2 0 Homeodomain-like domain HTH_31 PF13560.1 gi|452206466|ref|YP_007486588.1| - 0.068 13.3 0.0 0.18 12.0 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_Tnp_4 PF13613.1 gi|452206466|ref|YP_007486588.1| - 0.11 12.0 0.0 0.26 10.8 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix of DDE superfamily endonuclease DDE_3 PF13358.1 gi|452206467|ref|YP_007486589.1| - 2.6e-22 79.1 0.0 4.7e-22 78.3 0.0 1.4 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_33 PF13592.1 gi|452206467|ref|YP_007486589.1| - 4.9e-17 61.2 1.4 4.8e-16 58.0 0.1 3.1 4 0 0 4 4 4 1 Winged helix-turn helix HTH_29 PF13551.1 gi|452206467|ref|YP_007486589.1| - 1.3e-15 57.4 0.0 3.3e-15 56.1 0.0 1.7 2 0 0 2 2 2 1 Winged helix-turn helix HTH_32 PF13565.1 gi|452206467|ref|YP_007486589.1| - 8.1e-09 36.1 2.5 6.3e-08 33.3 0.2 3.3 2 1 1 3 3 3 1 Homeodomain-like domain HTH_23 PF13384.1 gi|452206467|ref|YP_007486589.1| - 1.9e-06 27.3 0.2 6e-06 25.7 0.0 1.9 2 0 0 2 2 2 1 Homeodomain-like domain rve PF00665.21 gi|452206467|ref|YP_007486589.1| - 5.1e-05 23.3 0.0 0.00053 20.0 0.0 2.3 2 0 0 2 2 2 1 Integrase core domain HTH_28 PF13518.1 gi|452206467|ref|YP_007486589.1| - 0.0002 21.2 0.0 0.0011 18.8 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_Tnp_1 PF01527.15 gi|452206467|ref|YP_007486589.1| - 0.00059 19.7 0.0 0.0012 18.7 0.0 1.5 1 0 0 1 1 1 1 Transposase HTH_38 PF13936.1 gi|452206467|ref|YP_007486589.1| - 0.0061 16.0 0.0 0.03 13.8 0.0 2.2 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_30 PF13556.1 gi|452206467|ref|YP_007486589.1| - 0.013 15.1 0.0 0.026 14.1 0.0 1.4 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain DDE_1 PF03184.14 gi|452206467|ref|YP_007486589.1| - 0.038 13.1 0.0 0.094 11.8 0.0 1.6 1 0 0 1 1 1 0 DDE superfamily endonuclease DDE_Tnp_ISAZ013 PF07592.6 gi|452206467|ref|YP_007486589.1| - 0.058 12.1 0.0 7.7 5.1 0.0 2.2 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain HTH_21 PF13276.1 gi|452206467|ref|YP_007486589.1| - 0.074 13.0 0.0 0.18 11.8 0.0 1.5 1 0 0 1 1 1 0 HTH-like domain Sigma70_r4_2 PF08281.7 gi|452206467|ref|YP_007486589.1| - 0.12 11.8 0.0 0.32 10.5 0.0 1.7 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_Tnp_ISL3 PF13542.1 gi|452206467|ref|YP_007486589.1| - 0.13 11.5 0.0 0.91 8.7 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 MarR PF01047.17 gi|452206467|ref|YP_007486589.1| - 0.14 11.8 0.0 0.61 9.8 0.0 2.0 2 0 0 2 2 2 0 MarR family Response_reg PF00072.19 gi|452206468|ref|YP_007486590.1| - 2.2e-21 75.9 0.0 4.3e-21 75.0 0.0 1.5 1 0 0 1 1 1 1 Response regulator receiver domain HATPase_c PF02518.21 gi|452206468|ref|YP_007486590.1| - 2.5e-19 69.0 0.1 8.2e-19 67.3 0.0 1.9 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.6 gi|452206468|ref|YP_007486590.1| - 1.8e-14 53.6 0.1 7.1e-12 45.2 0.0 2.8 2 0 0 2 2 2 1 PAS fold PAS_9 PF13426.1 gi|452206468|ref|YP_007486590.1| - 3.2e-14 53.1 0.4 1.4e-05 25.3 0.3 3.2 2 1 0 2 2 2 2 PAS domain PAS PF00989.19 gi|452206468|ref|YP_007486590.1| - 8.4e-11 41.6 0.1 2.4e-05 24.0 0.0 3.7 4 0 0 4 4 4 2 PAS fold HisKA PF00512.20 gi|452206468|ref|YP_007486590.1| - 1.1e-10 41.3 0.3 1.1e-10 41.3 0.2 2.6 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.5 gi|452206468|ref|YP_007486590.1| - 1.2e-09 38.1 0.7 0.00065 19.7 0.0 2.7 2 0 0 2 2 2 2 PAS fold HATPase_c_2 PF13581.1 gi|452206468|ref|YP_007486590.1| - 9e-06 25.4 0.1 2.6e-05 24.0 0.1 1.8 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_8 PF13188.1 gi|452206468|ref|YP_007486590.1| - 6.3e-05 22.6 0.0 0.00023 20.8 0.0 2.0 1 0 0 1 1 1 1 PAS domain OKR_DC_1_N PF03709.10 gi|452206468|ref|YP_007486590.1| - 8.2e-05 22.6 0.6 0.001 19.1 0.1 2.4 2 0 0 2 2 2 1 Orn/Lys/Arg decarboxylase, N-terminal domain HATPase_c_3 PF13589.1 gi|452206468|ref|YP_007486590.1| - 0.00081 19.0 0.0 0.0022 17.6 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Pox_vIL-18BP PF05566.7 gi|452206468|ref|YP_007486590.1| - 0.1 12.6 0.2 1.3 9.0 0.1 2.4 2 0 0 2 2 2 0 Orthopoxvirus interleukin 18 binding protein PAS_9 PF13426.1 gi|452206469|ref|YP_007486591.1| - 3e-24 85.3 0.3 1.6e-10 41.2 0.0 3.6 3 0 0 3 3 3 3 PAS domain PAS_4 PF08448.5 gi|452206469|ref|YP_007486591.1| - 2.2e-23 82.3 7.4 5.3e-14 52.1 0.2 4.1 4 1 0 4 4 4 3 PAS fold HATPase_c PF02518.21 gi|452206469|ref|YP_007486591.1| - 4.9e-22 77.7 0.1 9.8e-22 76.7 0.1 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.19 gi|452206469|ref|YP_007486591.1| - 7.4e-14 51.4 0.3 0.00012 21.8 0.1 3.6 3 0 0 3 3 3 3 PAS fold PAS_3 PF08447.6 gi|452206469|ref|YP_007486591.1| - 1.9e-12 47.1 0.2 0.0018 18.3 0.0 3.6 3 0 0 3 3 3 3 PAS fold GAF_2 PF13185.1 gi|452206469|ref|YP_007486591.1| - 1.3e-10 41.9 0.5 1.7e-08 35.1 0.2 2.7 2 0 0 2 2 2 1 GAF domain HisKA PF00512.20 gi|452206469|ref|YP_007486591.1| - 2e-09 37.2 0.9 2e-09 37.2 0.6 2.7 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_8 PF13188.1 gi|452206469|ref|YP_007486591.1| - 1e-08 34.7 0.0 0.011 15.5 0.0 3.6 3 0 0 3 3 3 2 PAS domain GAF_3 PF13492.1 gi|452206469|ref|YP_007486591.1| - 1.6e-07 31.4 0.0 3.4e-07 30.4 0.0 1.6 1 0 0 1 1 1 1 GAF domain HATPase_c_3 PF13589.1 gi|452206469|ref|YP_007486591.1| - 0.0029 17.2 0.0 0.0075 15.9 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_10 PF13596.1 gi|452206469|ref|YP_007486591.1| - 0.078 13.2 0.0 0.9 9.8 0.0 2.6 3 0 0 3 3 3 0 PAS domain DDE_Tnp_1 PF01609.16 gi|452206470|ref|YP_007486592.1| - 1.6e-15 57.2 1.1 3.2e-15 56.2 0.8 1.5 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_2 PF13586.1 gi|452206470|ref|YP_007486592.1| - 0.0021 18.2 0.2 0.004 17.2 0.1 1.6 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_6 PF13751.1 gi|452206470|ref|YP_007486592.1| - 0.012 15.6 0.1 0.022 14.7 0.1 1.5 1 0 0 1 1 1 0 Transposase DDE domain DDE_Tnp_1_3 PF13612.1 gi|452206470|ref|YP_007486592.1| - 0.013 15.2 0.0 0.023 14.4 0.0 1.4 1 0 0 1 1 1 0 Transposase DDE domain WWE PF02825.15 gi|452206470|ref|YP_007486592.1| - 0.04 13.3 0.0 0.8 9.1 0.0 2.4 2 1 0 2 2 2 0 WWE domain PAS_9 PF13426.1 gi|452206471|ref|YP_007486593.1| - 1.3e-54 182.9 1.0 3.1e-25 88.5 0.0 3.7 4 0 0 4 4 3 3 PAS domain PAS PF00989.19 gi|452206471|ref|YP_007486593.1| - 2.9e-31 107.5 0.1 2e-15 56.5 0.0 3.5 3 0 0 3 3 3 3 PAS fold PAS_4 PF08448.5 gi|452206471|ref|YP_007486593.1| - 4.5e-22 78.1 0.5 7.7e-10 38.7 0.1 3.4 3 0 0 3 3 3 3 PAS fold PAS_3 PF08447.6 gi|452206471|ref|YP_007486593.1| - 7.4e-19 67.6 0.2 7e-08 32.4 0.0 3.4 3 1 0 3 3 3 2 PAS fold PAS_8 PF13188.1 gi|452206471|ref|YP_007486593.1| - 8.4e-15 54.0 0.0 8.3e-05 22.3 0.0 3.8 3 0 0 3 3 3 3 PAS domain HATPase_c PF02518.21 gi|452206471|ref|YP_007486593.1| - 4.8e-14 52.0 0.0 3.5e-13 49.2 0.0 2.3 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.1 gi|452206471|ref|YP_007486593.1| - 5.1e-08 32.7 0.0 1.1e-07 31.6 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HisKA PF00512.20 gi|452206471|ref|YP_007486593.1| - 0.001 19.0 0.2 0.0024 17.8 0.1 1.7 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c_5 PF14501.1 gi|452206471|ref|YP_007486593.1| - 0.0088 15.7 0.0 0.023 14.4 0.0 1.6 1 0 0 1 1 1 1 GHKL domain DUF1098 PF06497.6 gi|452206471|ref|YP_007486593.1| - 0.05 13.6 0.0 0.12 12.4 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1098) HATPase_c_3 PF13589.1 gi|452206471|ref|YP_007486593.1| - 0.066 12.8 0.0 0.15 11.7 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MCPsignal PF00015.16 gi|452206472|ref|YP_007486594.1| - 1.2e-41 142.6 62.6 6e-41 140.3 24.8 3.4 2 1 1 3 3 3 2 Methyl-accepting chemotaxis protein (MCP) signalling domain Protoglobin PF11563.3 gi|452206472|ref|YP_007486594.1| - 1.1e-33 116.1 3.4 1.1e-33 116.1 2.4 2.1 2 0 0 2 2 1 1 Protoglobin TMP_2 PF06791.8 gi|452206472|ref|YP_007486594.1| - 0.00086 18.9 8.6 0.00086 18.9 6.0 3.6 1 1 2 3 3 3 1 Prophage tail length tape measure protein DUF948 PF06103.6 gi|452206472|ref|YP_007486594.1| - 0.01 15.6 32.4 0.35 10.7 4.0 5.7 2 2 3 5 5 5 0 Bacterial protein of unknown function (DUF948) Laminin_II PF06009.7 gi|452206472|ref|YP_007486594.1| - 0.014 15.1 3.5 0.014 15.1 2.4 5.0 2 2 2 4 4 4 0 Laminin Domain II DUF2580 PF10824.3 gi|452206472|ref|YP_007486594.1| - 0.022 15.1 3.4 0.022 15.1 2.3 4.6 4 2 2 6 6 4 0 Protein of unknown function (DUF2580) IncA PF04156.9 gi|452206472|ref|YP_007486594.1| - 0.028 14.0 34.6 0.096 12.2 5.3 3.5 3 1 0 3 3 3 0 IncA protein Syntaxin-6_N PF09177.6 gi|452206472|ref|YP_007486594.1| - 0.059 13.7 37.8 0.17 12.2 3.5 5.6 4 2 2 6 6 5 0 Syntaxin 6, N-terminal V-SNARE_C PF12352.3 gi|452206472|ref|YP_007486594.1| - 0.066 13.2 1.6 13 5.9 0.1 3.5 3 0 0 3 3 2 0 Snare region anchored in the vesicle membrane C-terminus Syntaxin PF00804.20 gi|452206472|ref|YP_007486594.1| - 0.14 12.3 39.8 0.84 9.8 5.2 5.4 2 1 4 6 6 6 0 Syntaxin DUF1664 PF07889.7 gi|452206472|ref|YP_007486594.1| - 0.14 11.9 31.9 0.023 14.5 2.8 5.1 2 2 3 5 5 5 0 Protein of unknown function (DUF1664) RPW8 PF05659.6 gi|452206472|ref|YP_007486594.1| - 0.34 10.4 8.9 0.3 10.6 0.1 3.7 1 1 2 4 4 4 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 NPV_P10 PF05531.7 gi|452206472|ref|YP_007486594.1| - 0.36 11.1 38.7 3.5 7.9 4.8 6.8 4 2 2 6 6 6 0 Nucleopolyhedrovirus P10 protein Mnd1 PF03962.10 gi|452206472|ref|YP_007486594.1| - 0.48 10.0 32.9 0.6 9.7 4.0 3.8 2 2 2 4 4 4 0 Mnd1 family ATP-synt_ab PF00006.20 gi|452206472|ref|YP_007486594.1| - 0.67 9.4 7.8 0.36 10.2 2.4 2.6 2 1 1 3 3 3 0 ATP synthase alpha/beta family, nucleotide-binding domain COG5 PF10392.4 gi|452206472|ref|YP_007486594.1| - 0.83 9.6 18.4 1.7 8.5 0.9 4.5 2 2 2 4 4 4 0 Golgi transport complex subunit 5 Reo_sigmaC PF04582.7 gi|452206472|ref|YP_007486594.1| - 1.1 8.3 32.3 0.56 9.3 6.1 3.1 2 1 2 4 4 4 0 Reovirus sigma C capsid protein Cauli_AT PF03233.8 gi|452206472|ref|YP_007486594.1| - 1.4 8.6 18.9 3.5 7.3 0.2 4.6 1 1 3 5 5 5 0 Aphid transmission protein Spc7 PF08317.6 gi|452206472|ref|YP_007486594.1| - 2.1 6.8 32.2 0.24 10.0 6.8 3.5 2 1 0 3 3 3 0 Spc7 kinetochore protein HR1 PF02185.11 gi|452206472|ref|YP_007486594.1| - 2.2 8.0 12.4 0.029 14.0 1.1 3.3 4 0 0 4 4 4 0 Hr1 repeat Prominin PF05478.6 gi|452206472|ref|YP_007486594.1| - 3 5.2 27.2 0.24 8.8 14.1 2.2 2 1 1 3 3 3 0 Prominin DUF883 PF05957.8 gi|452206472|ref|YP_007486594.1| - 3.2 8.2 35.3 0.17 12.2 2.5 5.5 2 2 4 6 6 6 0 Bacterial protein of unknown function (DUF883) HeLo PF14479.1 gi|452206472|ref|YP_007486594.1| - 4.2 7.0 20.3 1.1 8.9 5.1 3.6 3 1 0 3 3 2 0 Prion-inhibition and propagation Vps53_N PF04100.7 gi|452206472|ref|YP_007486594.1| - 8.2 5.0 34.4 0.17 10.6 4.8 3.8 2 2 1 3 3 3 0 Vps53-like, N-terminal TPR_MLP1_2 PF07926.7 gi|452206472|ref|YP_007486594.1| - 8.8 6.0 40.1 0.88 9.3 8.6 4.1 3 2 0 3 3 3 0 TPR/MLP1/MLP2-like protein DUF2800 PF10926.3 gi|452206473|ref|YP_007486595.1| - 3.3e-05 23.1 0.1 6.7e-05 22.1 0.0 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF2800) FlaC_arch PF05377.6 gi|452206473|ref|YP_007486595.1| - 0.025 14.4 3.3 0.41 10.5 0.5 2.7 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) MerR-DNA-bind PF09278.6 gi|452206473|ref|YP_007486595.1| - 0.11 12.9 0.8 0.11 12.9 0.5 2.3 3 0 0 3 3 3 0 MerR, DNA binding DivIC PF04977.10 gi|452206473|ref|YP_007486595.1| - 4.7 6.7 7.5 0.38 10.2 0.7 2.5 3 0 0 3 3 3 0 Septum formation initiator UPF0547 PF10571.4 gi|452206474|ref|YP_007486596.1| - 1e-05 25.0 0.0 1.7e-05 24.4 0.0 1.4 1 1 0 1 1 1 1 Uncharacterised protein family UPF0547 FANCL_C PF11793.3 gi|452206474|ref|YP_007486596.1| - 0.004 17.0 1.6 0.27 11.2 0.1 2.1 2 0 0 2 2 2 1 FANCL C-terminal domain VP_N-CPKC PF11475.3 gi|452206474|ref|YP_007486596.1| - 0.0043 16.5 0.3 1.5 8.4 0.0 2.4 2 0 0 2 2 2 2 Virion protein N terminal domain zf-ribbon_3 PF13248.1 gi|452206474|ref|YP_007486596.1| - 0.0068 15.5 2.3 0.044 13.0 1.7 1.9 1 1 1 2 2 2 2 zinc-ribbon domain zf-LITAF-like PF10601.4 gi|452206474|ref|YP_007486596.1| - 0.0095 15.7 2.6 1.1 9.2 0.2 2.0 1 1 1 2 2 2 2 LITAF-like zinc ribbon domain DZR PF12773.2 gi|452206474|ref|YP_007486596.1| - 0.024 14.4 0.9 0.051 13.3 0.7 1.5 1 1 0 1 1 1 0 Double zinc ribbon zf-C3HC4_3 PF13920.1 gi|452206474|ref|YP_007486596.1| - 0.026 14.1 0.5 2.1 8.0 0.0 2.0 2 0 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) Lar_restr_allev PF14354.1 gi|452206474|ref|YP_007486596.1| - 0.041 14.1 0.7 0.056 13.7 0.5 1.2 1 0 0 1 1 1 0 Restriction alleviation protein Lar Zn-ribbon_8 PF09723.5 gi|452206474|ref|YP_007486596.1| - 0.066 13.1 1.5 7.9 6.5 0.1 2.1 2 0 0 2 2 2 0 Zinc ribbon domain DUF329 PF03884.9 gi|452206474|ref|YP_007486596.1| - 0.077 12.5 1.9 6.4 6.4 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF329) zf-C2H2_4 PF13894.1 gi|452206474|ref|YP_007486596.1| - 0.095 13.0 0.8 2.8 8.4 0.0 2.1 2 0 0 2 2 2 0 C2H2-type zinc finger zf-Di19 PF05605.7 gi|452206474|ref|YP_007486596.1| - 0.099 12.7 1.4 10 6.3 0.2 2.1 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding zf-TFIIB PF13453.1 gi|452206474|ref|YP_007486596.1| - 0.1 11.7 2.7 0.31 10.2 1.9 1.7 1 1 1 2 2 2 0 Transcription factor zinc-finger Terminase_GpA PF05876.7 gi|452206474|ref|YP_007486596.1| - 0.11 10.8 0.3 0.11 10.7 0.2 1.0 1 0 0 1 1 1 0 Phage terminase large subunit (GpA) HypA PF01155.14 gi|452206474|ref|YP_007486596.1| - 0.13 11.9 0.2 0.15 11.7 0.2 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-CSL PF05207.8 gi|452206474|ref|YP_007486596.1| - 0.15 11.5 2.4 0.97 8.9 0.2 2.1 1 1 1 2 2 2 0 CSL zinc finger zinc-ribbons_6 PF07191.7 gi|452206474|ref|YP_007486596.1| - 0.2 11.4 1.3 0.35 10.6 0.9 1.4 1 1 0 1 1 1 0 zinc-ribbons zinc_ribbon_4 PF13717.1 gi|452206474|ref|YP_007486596.1| - 0.37 10.5 4.5 18 5.1 3.2 2.2 1 1 0 1 1 1 0 zinc-ribbon domain Zn_Tnp_IS1 PF03811.8 gi|452206474|ref|YP_007486596.1| - 0.51 9.8 4.2 3 7.4 0.2 2.2 2 0 0 2 2 2 0 InsA N-terminal domain zinc_ribbon_5 PF13719.1 gi|452206474|ref|YP_007486596.1| - 0.59 9.7 5.3 7.1 6.3 0.4 2.2 1 1 1 2 2 2 0 zinc-ribbon domain zf-HC2 PF13490.1 gi|452206474|ref|YP_007486596.1| - 1.2 9.1 5.9 2.5 8.1 0.4 2.2 2 0 0 2 2 2 0 Putative zinc-finger Cys_rich_CPXG PF14255.1 gi|452206474|ref|YP_007486596.1| - 1.2 9.0 5.7 4.4 7.1 0.6 2.2 1 1 1 2 2 2 0 Cysteine-rich CPXCG zf-RING_4 PF14570.1 gi|452206474|ref|YP_007486596.1| - 6.4 6.4 6.5 4.1 7.0 0.7 2.1 1 1 0 2 2 2 0 RING/Ubox like zinc-binding domain zf-RING_3 PF14369.1 gi|452206474|ref|YP_007486596.1| - 6.9 6.7 6.3 93 3.1 0.4 2.1 1 1 1 2 2 2 0 zinc-finger DZR PF12773.2 gi|452206475|ref|YP_007486597.1| - 9.9e-06 25.2 1.3 1.2e-05 24.9 0.9 1.1 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|452206475|ref|YP_007486597.1| - 5.9e-05 22.4 4.0 8.7e-05 21.8 2.7 1.2 1 0 0 1 1 1 1 zinc-ribbon domain HypA PF01155.14 gi|452206475|ref|YP_007486597.1| - 0.001 18.7 1.1 0.001 18.7 0.7 1.1 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family Zn-ribbon_8 PF09723.5 gi|452206475|ref|YP_007486597.1| - 0.0016 18.3 4.4 0.38 10.7 3.5 2.1 1 1 1 2 2 2 2 Zinc ribbon domain zf-ribbon_3 PF13248.1 gi|452206475|ref|YP_007486597.1| - 0.0034 16.5 4.4 0.007 15.5 3.1 1.5 1 1 0 1 1 1 1 zinc-ribbon domain NRDD PF13597.1 gi|452206475|ref|YP_007486597.1| - 0.0044 15.1 0.9 0.0044 15.1 0.6 1.0 1 0 0 1 1 1 1 Anaerobic ribonucleoside-triphosphate reductase TFIIS_C PF01096.13 gi|452206475|ref|YP_007486597.1| - 0.0053 16.3 1.1 1.3 8.7 0.1 2.1 2 0 0 2 2 2 1 Transcription factor S-II (TFIIS) OrfB_Zn_ribbon PF07282.6 gi|452206475|ref|YP_007486597.1| - 0.017 14.7 2.6 0.031 13.9 0.3 1.9 1 1 1 2 2 2 0 Putative transposase DNA-binding domain DUF1272 PF06906.6 gi|452206475|ref|YP_007486597.1| - 0.019 14.8 0.9 0.019 14.7 0.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1272) Zn_Tnp_IS1595 PF12760.2 gi|452206475|ref|YP_007486597.1| - 0.019 14.7 3.4 0.72 9.7 0.1 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain RE_MamI PF09567.5 gi|452206475|ref|YP_007486597.1| - 0.025 13.6 0.1 0.027 13.5 0.1 1.0 1 0 0 1 1 1 0 MamI restriction endonuclease Nudix_N_2 PF14803.1 gi|452206475|ref|YP_007486597.1| - 0.034 13.8 2.2 2.6 7.8 0.1 2.3 2 0 0 2 2 2 0 Nudix N-terminal NOB1_Zn_bind PF08772.6 gi|452206475|ref|YP_007486597.1| - 0.037 13.8 0.7 0.047 13.5 0.5 1.4 1 1 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like Prok-RING_1 PF14446.1 gi|452206475|ref|YP_007486597.1| - 0.041 13.6 1.8 0.056 13.1 1.3 1.2 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 FdhE PF04216.7 gi|452206475|ref|YP_007486597.1| - 0.046 13.4 0.4 0.049 13.3 0.3 1.0 1 0 0 1 1 1 0 Protein involved in formate dehydrogenase formation zf-ISL3 PF14690.1 gi|452206475|ref|YP_007486597.1| - 0.047 13.7 0.6 3.6 7.6 0.0 2.2 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 RNA_POL_M_15KD PF02150.11 gi|452206475|ref|YP_007486597.1| - 0.057 13.1 3.2 0.81 9.4 0.1 2.2 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit Stc1 PF12898.2 gi|452206475|ref|YP_007486597.1| - 0.059 13.4 1.3 0.061 13.3 0.9 1.1 1 0 0 1 1 1 0 Stc1 domain DUF3797 PF12677.2 gi|452206475|ref|YP_007486597.1| - 0.062 12.9 2.2 0.54 9.9 0.1 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) Ogr_Delta PF04606.7 gi|452206475|ref|YP_007486597.1| - 0.066 12.8 2.7 0.96 9.1 0.1 2.2 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger YhfH PF14149.1 gi|452206475|ref|YP_007486597.1| - 0.16 11.8 4.9 0.96 9.2 0.4 2.2 1 1 1 2 2 2 0 YhfH-like protein zf-C2HC_2 PF13913.1 gi|452206475|ref|YP_007486597.1| - 0.16 11.6 1.8 0.85 9.3 0.0 2.2 2 0 0 2 2 2 0 zinc-finger of a C2HC-type zf-C4_Topoisom PF01396.14 gi|452206475|ref|YP_007486597.1| - 0.18 11.3 1.6 0.3 10.6 0.1 1.9 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger GFA PF04828.9 gi|452206475|ref|YP_007486597.1| - 0.18 11.7 1.7 1.4 8.8 1.2 1.9 1 1 0 1 1 1 0 Glutathione-dependent formaldehyde-activating enzyme DUF35_N PF12172.3 gi|452206475|ref|YP_007486597.1| - 0.2 11.6 3.7 0.52 10.2 2.5 1.7 1 1 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) TF_Zn_Ribbon PF08271.7 gi|452206475|ref|YP_007486597.1| - 0.3 10.4 0.4 0.3 10.4 0.3 2.1 1 1 1 2 2 2 0 TFIIB zinc-binding Lar_restr_allev PF14354.1 gi|452206475|ref|YP_007486597.1| - 0.33 11.2 3.4 3.6 7.9 0.2 2.1 1 1 1 2 2 2 0 Restriction alleviation protein Lar CpXC PF14353.1 gi|452206475|ref|YP_007486597.1| - 0.33 10.9 2.2 5.5 6.9 0.1 2.1 1 1 1 2 2 2 0 CpXC protein zf-RING_3 PF14369.1 gi|452206475|ref|YP_007486597.1| - 0.43 10.6 4.4 4.7 7.2 3.4 1.9 1 1 1 2 2 2 0 zinc-finger DUF1451 PF07295.6 gi|452206475|ref|YP_007486597.1| - 0.48 10.1 2.5 0.94 9.2 1.7 1.5 1 1 1 2 2 2 0 Protein of unknown function (DUF1451) FYVE PF01363.16 gi|452206475|ref|YP_007486597.1| - 0.98 9.3 4.6 7.1 6.6 3.2 1.9 1 1 0 1 1 1 0 FYVE zinc finger DNA_RNApol_7kD PF03604.8 gi|452206475|ref|YP_007486597.1| - 1.5 8.3 4.0 4.9 6.7 2.8 1.8 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit UPF0547 PF10571.4 gi|452206475|ref|YP_007486597.1| - 3 7.6 9.7 9.6 5.9 1.1 2.2 1 1 1 2 2 2 0 Uncharacterised protein family UPF0547 Opy2 PF09463.5 gi|452206475|ref|YP_007486597.1| - 3.1 7.9 5.9 14 5.9 3.9 1.9 1 1 1 2 2 2 0 Opy2 protein Prim_Zn_Ribbon PF08273.7 gi|452206475|ref|YP_007486597.1| - 8.1 6.6 6.9 9.7 6.3 0.8 2.1 1 1 1 2 2 2 0 Zinc-binding domain of primase-helicase DUF790 PF05626.6 gi|452206476|ref|YP_007486598.1| - 1.2e-131 438.7 0.0 1.4e-131 438.5 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF790) ResIII PF04851.10 gi|452206477|ref|YP_007486599.1| - 1.1e-24 87.3 0.0 4.4e-24 85.3 0.0 2.1 2 1 0 2 2 2 1 Type III restriction enzyme, res subunit Helicase_C PF00271.26 gi|452206477|ref|YP_007486599.1| - 7.5e-20 70.5 0.2 2e-19 69.2 0.0 1.8 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DEAD PF00270.24 gi|452206477|ref|YP_007486599.1| - 6.1e-13 48.6 0.0 1.4e-12 47.4 0.0 1.6 1 0 0 1 1 1 1 DEAD/DEAH box helicase AAA_22 PF13401.1 gi|452206477|ref|YP_007486599.1| - 0.00026 21.1 0.0 0.0016 18.5 0.0 2.3 2 2 0 2 2 2 1 AAA domain PhoH PF02562.11 gi|452206477|ref|YP_007486599.1| - 0.0026 16.9 0.0 0.0046 16.2 0.0 1.3 1 0 0 1 1 1 1 PhoH-like protein IstB_IS21 PF01695.12 gi|452206477|ref|YP_007486599.1| - 0.0035 16.7 0.1 0.062 12.7 0.0 2.5 3 0 0 3 3 3 1 IstB-like ATP binding protein Zot PF05707.7 gi|452206477|ref|YP_007486599.1| - 0.01 15.3 0.0 0.026 13.9 0.0 1.6 1 1 0 1 1 1 0 Zonular occludens toxin (Zot) DivIVA PF05103.8 gi|452206477|ref|YP_007486599.1| - 0.013 15.6 1.7 0.014 15.4 0.3 1.6 2 0 0 2 2 2 0 DivIVA protein Helicase_C_2 PF13307.1 gi|452206477|ref|YP_007486599.1| - 0.044 13.7 0.2 1.1 9.1 0.0 3.1 3 0 0 3 3 3 0 Helicase C-terminal domain AAA_19 PF13245.1 gi|452206477|ref|YP_007486599.1| - 0.091 12.5 0.1 0.44 10.3 0.0 2.2 2 0 0 2 2 2 0 Part of AAA domain FtsH_ext PF06480.10 gi|452206478|ref|YP_007486600.1| - 0.13 12.4 6.1 1.4 9.1 0.9 3.0 3 1 0 3 3 3 0 FtsH Extracellular Tropomyosin_1 PF12718.2 gi|452206479|ref|YP_007486601.1| - 9.1e-05 22.3 8.2 0.00018 21.3 5.6 1.5 1 0 0 1 1 1 1 Tropomyosin like ATG16 PF08614.6 gi|452206479|ref|YP_007486601.1| - 0.00085 19.1 4.1 0.0021 17.8 2.9 1.6 1 0 0 1 1 1 1 Autophagy protein 16 (ATG16) IncA PF04156.9 gi|452206479|ref|YP_007486601.1| - 0.001 18.7 6.9 0.001 18.7 4.8 2.1 2 0 0 2 2 2 1 IncA protein Spc7 PF08317.6 gi|452206479|ref|YP_007486601.1| - 0.0025 16.5 3.8 0.0042 15.8 2.7 1.2 1 0 0 1 1 1 1 Spc7 kinetochore protein DivIC PF04977.10 gi|452206479|ref|YP_007486601.1| - 0.0027 17.1 8.9 0.0086 15.5 2.0 2.4 1 1 1 2 2 2 2 Septum formation initiator ADIP PF11559.3 gi|452206479|ref|YP_007486601.1| - 0.0042 17.0 4.1 0.0071 16.2 2.8 1.3 1 0 0 1 1 1 1 Afadin- and alpha -actinin-Binding TMF_DNA_bd PF12329.3 gi|452206479|ref|YP_007486601.1| - 0.0048 16.6 7.4 0.0097 15.6 5.1 1.5 1 0 0 1 1 1 1 TATA element modulatory factor 1 DNA binding DUF972 PF06156.8 gi|452206479|ref|YP_007486601.1| - 0.0056 17.0 1.3 0.012 15.9 0.9 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF972) bZIP_2 PF07716.10 gi|452206479|ref|YP_007486601.1| - 0.0067 16.2 5.2 0.45 10.3 0.0 2.3 1 1 1 2 2 2 2 Basic region leucine zipper IFP_35_N PF07334.8 gi|452206479|ref|YP_007486601.1| - 0.012 15.5 2.9 0.031 14.2 0.4 2.7 1 1 1 2 2 2 0 Interferon-induced 35 kDa protein (IFP 35) N-terminus FlaC_arch PF05377.6 gi|452206479|ref|YP_007486601.1| - 0.015 15.1 1.9 0.048 13.5 1.3 1.9 1 1 0 1 1 1 0 Flagella accessory protein C (FlaC) bZIP_1 PF00170.16 gi|452206479|ref|YP_007486601.1| - 0.018 14.9 5.3 0.02 14.8 0.5 2.2 1 1 1 2 2 2 0 bZIP transcription factor DUF724 PF05266.9 gi|452206479|ref|YP_007486601.1| - 0.021 14.4 1.6 0.035 13.7 1.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF724) PspA_IM30 PF04012.7 gi|452206479|ref|YP_007486601.1| - 0.025 13.9 1.8 0.041 13.2 1.3 1.3 1 0 0 1 1 1 0 PspA/IM30 family APG6 PF04111.7 gi|452206479|ref|YP_007486601.1| - 0.029 13.4 5.5 0.045 12.8 3.8 1.2 1 0 0 1 1 1 0 Autophagy protein Apg6 DUF4140 PF13600.1 gi|452206479|ref|YP_007486601.1| - 0.032 14.6 7.9 0.068 13.6 1.5 3.4 1 1 1 2 2 2 0 N-terminal domain of unknown function (DUF4140) Striatin PF08232.7 gi|452206479|ref|YP_007486601.1| - 0.034 14.4 1.5 0.09 13.0 1.0 1.7 1 0 0 1 1 1 0 Striatin family TBPIP PF07106.8 gi|452206479|ref|YP_007486601.1| - 0.034 13.6 3.5 0.063 12.8 2.4 1.3 1 0 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Myosin_tail_1 PF01576.14 gi|452206479|ref|YP_007486601.1| - 0.041 11.6 7.5 0.056 11.1 5.2 1.1 1 0 0 1 1 1 0 Myosin tail DUF4201 PF13870.1 gi|452206479|ref|YP_007486601.1| - 0.041 13.3 0.4 0.063 12.7 0.3 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4201) AAA_13 PF13166.1 gi|452206479|ref|YP_007486601.1| - 0.05 12.0 2.2 0.072 11.5 1.6 1.1 1 0 0 1 1 1 0 AAA domain Spc24 PF08286.6 gi|452206479|ref|YP_007486601.1| - 0.056 13.1 2.8 0.16 11.6 1.9 1.9 1 0 0 1 1 1 0 Spc24 subunit of Ndc80 ERM PF00769.14 gi|452206479|ref|YP_007486601.1| - 0.057 12.9 3.5 0.096 12.2 2.4 1.2 1 0 0 1 1 1 0 Ezrin/radixin/moesin family Seryl_tRNA_N PF02403.17 gi|452206479|ref|YP_007486601.1| - 0.098 12.6 3.7 0.18 11.8 2.6 1.3 1 0 0 1 1 1 0 Seryl-tRNA synthetase N-terminal domain Rab5-bind PF09311.6 gi|452206479|ref|YP_007486601.1| - 0.098 12.5 5.9 0.15 11.9 4.1 1.2 1 0 0 1 1 1 0 Rabaptin-like protein Shugoshin_N PF07558.6 gi|452206479|ref|YP_007486601.1| - 0.1 12.3 0.1 0.23 11.2 0.1 1.5 1 0 0 1 1 1 0 Shugoshin N-terminal coiled-coil region Rootletin PF15035.1 gi|452206479|ref|YP_007486601.1| - 0.14 12.1 3.8 0.24 11.3 2.6 1.3 1 0 0 1 1 1 0 Ciliary rootlet component, centrosome cohesion DUF3450 PF11932.3 gi|452206479|ref|YP_007486601.1| - 0.17 11.1 7.7 0.019 14.2 2.3 1.5 2 0 0 2 2 1 0 Protein of unknown function (DUF3450) Nsp1_C PF05064.8 gi|452206479|ref|YP_007486601.1| - 0.18 11.4 3.9 0.39 10.3 2.7 1.4 1 0 0 1 1 1 0 Nsp1-like C-terminal region DUF904 PF06005.7 gi|452206479|ref|YP_007486601.1| - 0.2 11.9 6.9 0.41 10.9 4.8 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF904) BLOC1_2 PF10046.4 gi|452206479|ref|YP_007486601.1| - 0.22 11.6 2.9 0.61 10.2 2.0 1.8 1 0 0 1 1 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 CENP-F_leu_zip PF10473.4 gi|452206479|ref|YP_007486601.1| - 0.29 10.9 7.5 0.72 9.7 5.0 1.7 1 1 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 M PF02370.11 gi|452206479|ref|YP_007486601.1| - 0.37 11.2 4.8 8.6 7.1 0.5 3.1 1 1 0 2 2 2 0 M protein repeat Prefoldin_2 PF01920.15 gi|452206479|ref|YP_007486601.1| - 0.41 10.4 4.3 0.49 10.1 1.8 1.9 1 1 1 2 2 2 0 Prefoldin subunit Ax_dynein_light PF10211.4 gi|452206479|ref|YP_007486601.1| - 0.41 10.4 1.9 0.76 9.5 1.3 1.3 1 0 0 1 1 1 0 Axonemal dynein light chain HALZ PF02183.13 gi|452206479|ref|YP_007486601.1| - 0.83 9.4 3.0 0.72 9.6 0.5 1.9 1 1 1 2 2 2 0 Homeobox associated leucine zipper HR1 PF02185.11 gi|452206479|ref|YP_007486601.1| - 0.94 9.2 7.8 1.8 8.3 0.9 2.4 1 1 1 2 2 2 0 Hr1 repeat KfrA_N PF11740.3 gi|452206479|ref|YP_007486601.1| - 1.1 9.6 8.2 0.57 10.6 3.9 1.8 2 0 0 2 2 1 0 Plasmid replication region DNA-binding N-term DUF4200 PF13863.1 gi|452206479|ref|YP_007486601.1| - 1.3 8.9 5.2 5.7 6.8 3.6 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4200) TPR_MLP1_2 PF07926.7 gi|452206479|ref|YP_007486601.1| - 1.5 8.5 7.5 5 6.8 1.2 2.2 1 1 1 2 2 2 0 TPR/MLP1/MLP2-like protein Cep57_CLD_2 PF14197.1 gi|452206479|ref|YP_007486601.1| - 2.9 7.9 11.1 5.4 7.0 7.7 1.4 1 0 0 1 1 1 0 Centrosome localisation domain of PPC89 SlyX PF04102.7 gi|452206479|ref|YP_007486601.1| - 7.6 6.9 6.3 1.8 8.9 1.9 1.9 2 0 0 2 2 1 0 SlyX PepSY_TM_3 PF13706.1 gi|452206479|ref|YP_007486601.1| - 9.9 5.6 5.8 19 4.7 4.0 1.4 1 0 0 1 1 1 0 PepSY-associated TM helix Phage_integrase PF00589.17 gi|452206480|ref|YP_007486602.1| - 2.6e-13 50.0 0.0 1.2e-12 47.8 0.0 2.0 1 1 0 1 1 1 1 Phage integrase family Phage_int_SAM_1 PF02899.12 gi|452206480|ref|YP_007486602.1| - 9.7e-08 32.0 1.4 1.6e-07 31.3 0.2 1.9 2 0 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.1 gi|452206480|ref|YP_007486602.1| - 1.6e-05 25.0 0.2 3.6e-05 24.0 0.1 1.5 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain DDE_Tnp_IS240 PF13610.1 gi|452206481|ref|YP_007486603.1| - 1.7e-27 96.0 0.1 2.6e-27 95.4 0.1 1.3 1 0 0 1 1 1 1 DDE domain rve_3 PF13683.1 gi|452206481|ref|YP_007486603.1| - 9.4e-10 37.8 4.2 1.1e-09 37.6 2.1 1.7 2 0 0 2 2 2 1 Integrase core domain DDE_Tnp_IS66 PF03050.9 gi|452206481|ref|YP_007486603.1| - 1.8e-05 24.1 0.2 3.5e-05 23.1 0.1 1.5 1 1 0 1 1 1 1 Transposase IS66 family rve PF00665.21 gi|452206481|ref|YP_007486603.1| - 0.045 13.8 0.0 0.18 11.9 0.0 2.0 2 0 0 2 2 2 0 Integrase core domain rve_2 PF13333.1 gi|452206481|ref|YP_007486603.1| - 0.13 12.3 0.0 0.21 11.6 0.0 1.4 1 0 0 1 1 1 0 Integrase core domain AIRS_C PF02769.17 gi|452206482|ref|YP_007486604.1| - 6.5e-39 133.3 14.7 4.7e-28 98.1 0.6 2.5 2 0 0 2 2 2 2 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|452206482|ref|YP_007486604.1| - 1.5e-36 124.4 14.9 3.7e-24 84.7 0.1 3.7 5 0 0 5 5 5 2 AIR synthase related protein, N-terminal domain PHP_C PF13263.1 gi|452206483|ref|YP_007486605.1| - 2.3e-22 78.2 0.8 2.3e-22 78.2 0.5 1.8 2 0 0 2 2 2 1 PHP-associated PHP PF02811.14 gi|452206483|ref|YP_007486605.1| - 1.5e-15 57.4 0.1 2.2e-15 56.9 0.1 1.4 1 1 0 1 1 1 1 PHP domain Asn_synthase PF00733.16 gi|452206484|ref|YP_007486606.1| - 1.8e-35 122.6 0.1 3e-35 121.9 0.1 1.3 1 0 0 1 1 1 1 Asparagine synthase Prothymosin PF03247.9 gi|452206485|ref|YP_007486607.1| - 0.66 10.1 13.3 1.2 9.2 9.2 1.5 1 0 0 1 1 1 0 Prothymosin/parathymosin family TFIIB PF00382.14 gi|452206486|ref|YP_007486608.1| - 4.3e-39 132.1 0.2 8.5e-20 70.3 0.0 2.2 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|452206486|ref|YP_007486608.1| - 8.9e-18 63.3 2.7 2.4e-17 61.9 1.9 1.7 2 0 0 2 2 2 1 TFIIB zinc-binding RRN7 PF11781.3 gi|452206486|ref|YP_007486608.1| - 9.6e-05 21.7 1.6 0.00017 20.9 1.1 1.4 1 0 0 1 1 1 1 RNA polymerase I-specific transcription initiation factor Rrn7 DZR PF12773.2 gi|452206486|ref|YP_007486608.1| - 0.012 15.4 0.8 0.022 14.5 0.5 1.4 1 0 0 1 1 1 0 Double zinc ribbon OrfB_Zn_ribbon PF07282.6 gi|452206486|ref|YP_007486608.1| - 0.018 14.6 0.6 0.037 13.6 0.4 1.5 1 0 0 1 1 1 0 Putative transposase DNA-binding domain A2L_zn_ribbon PF08792.5 gi|452206486|ref|YP_007486608.1| - 0.029 13.8 1.5 4.6 6.8 0.2 2.3 2 0 0 2 2 2 0 A2L zinc ribbon domain Sigma70_r4 PF04545.11 gi|452206486|ref|YP_007486608.1| - 0.045 13.0 0.4 1.5 8.1 0.0 3.3 4 0 0 4 4 4 0 Sigma-70, region 4 zf-ribbon_3 PF13248.1 gi|452206486|ref|YP_007486608.1| - 0.05 12.8 3.1 0.13 11.5 2.1 1.7 1 1 0 1 1 1 0 zinc-ribbon domain zf-DHHC PF01529.15 gi|452206486|ref|YP_007486608.1| - 0.068 12.5 0.4 0.1 11.9 0.3 1.2 1 0 0 1 1 1 0 DHHC palmitoyltransferase Cyclin_N PF00134.18 gi|452206486|ref|YP_007486608.1| - 0.1 12.1 0.0 0.3 10.6 0.0 1.7 2 0 0 2 2 2 0 Cyclin, N-terminal domain Autoind_bind PF03472.10 gi|452206486|ref|YP_007486608.1| - 0.12 11.6 0.0 0.26 10.5 0.0 1.5 1 0 0 1 1 1 0 Autoinducer binding domain Zn-ribbon_8 PF09723.5 gi|452206486|ref|YP_007486608.1| - 0.13 12.2 4.0 0.6 10.1 0.2 2.4 1 1 1 2 2 2 0 Zinc ribbon domain Nudix_N_2 PF14803.1 gi|452206486|ref|YP_007486608.1| - 0.15 11.8 2.4 0.45 10.2 1.7 1.9 1 1 0 1 1 1 0 Nudix N-terminal zf-RING_3 PF14369.1 gi|452206486|ref|YP_007486608.1| - 1.4 9.0 3.3 1.7 8.6 0.2 2.2 1 1 1 2 2 2 0 zinc-finger zf-IS66 PF13005.2 gi|452206486|ref|YP_007486608.1| - 1.8 8.5 7.2 3.8 7.5 1.5 3.2 2 1 1 3 3 3 0 zinc-finger binding domain of transposase IS66 Trm112p PF03966.11 gi|452206486|ref|YP_007486608.1| - 2.7 8.4 7.7 3.8 7.9 1.1 3.2 2 1 1 3 3 3 0 Trm112p-like protein HTH_IclR PF09339.5 gi|452206487|ref|YP_007486609.1| - 0.00056 19.4 0.0 0.00095 18.7 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_11 PF08279.7 gi|452206487|ref|YP_007486609.1| - 0.00089 18.8 0.0 0.0015 18.1 0.0 1.3 1 0 0 1 1 1 1 HTH domain HTH_AsnC-type PF13404.1 gi|452206487|ref|YP_007486609.1| - 0.002 17.6 0.3 0.0095 15.4 0.1 1.9 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_27 PF13463.1 gi|452206487|ref|YP_007486609.1| - 0.005 17.1 0.1 0.0064 16.7 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_38 PF13936.1 gi|452206487|ref|YP_007486609.1| - 0.032 13.7 0.0 0.054 13.0 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Mrr_N PF14338.1 gi|452206487|ref|YP_007486609.1| - 0.1 12.6 0.1 1 9.4 0.0 1.9 1 1 1 2 2 2 0 Mrr N-terminal domain DUF2042 PF09743.4 gi|452206487|ref|YP_007486609.1| - 0.13 11.5 0.0 0.2 10.9 0.0 1.3 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2042) Glu-tRNAGln PF02686.10 gi|452206488|ref|YP_007486610.1| - 1.8e-19 69.2 1.0 1.8e-19 69.2 0.7 1.7 2 1 0 2 2 2 1 Glu-tRNAGln amidotransferase C subunit Amidase PF01425.16 gi|452206489|ref|YP_007486611.1| - 3.5e-141 471.0 1.8 4.2e-141 470.8 1.3 1.0 1 0 0 1 1 1 1 Amidase Abi PF02517.11 gi|452206490|ref|YP_007486612.1| - 3.2e-15 56.0 8.1 3.2e-15 56.0 5.6 2.8 2 1 0 2 2 2 1 CAAX protease self-immunity UPF0175 PF03683.8 gi|452206491|ref|YP_007486613.1| - 0.0091 15.4 0.2 3.6 7.1 0.0 2.3 2 0 0 2 2 2 2 Uncharacterised protein family (UPF0175) HTH_28 PF13518.1 gi|452206491|ref|YP_007486613.1| - 0.05 13.6 0.0 0.4 10.7 0.0 2.2 1 1 1 2 2 2 0 Helix-turn-helix domain AAA_31 PF13614.1 gi|452206492|ref|YP_007486614.1| - 3.2e-07 30.4 0.0 0.042 13.7 0.0 2.7 2 1 1 3 3 3 2 AAA domain CbiA PF01656.18 gi|452206492|ref|YP_007486614.1| - 7.5e-06 25.4 0.1 1e-05 25.0 0.1 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain HIT PF01230.18 gi|452206493|ref|YP_007486615.1| - 1e-24 86.9 0.0 1.2e-24 86.6 0.0 1.1 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.3 gi|452206493|ref|YP_007486615.1| - 1.1e-11 44.9 0.0 1.4e-11 44.6 0.0 1.1 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding PMP22_Claudin PF00822.15 gi|452206495|ref|YP_007486617.1| - 0.051 13.2 0.7 0.055 13.1 0.5 1.1 1 0 0 1 1 1 0 PMP-22/EMP/MP20/Claudin family Thia_YuaJ PF09515.5 gi|452206495|ref|YP_007486617.1| - 0.057 13.1 1.2 0.061 13.0 0.8 1.1 1 0 0 1 1 1 0 Thiamine transporter protein (Thia_YuaJ) TMEM238 PF15125.1 gi|452206495|ref|YP_007486617.1| - 1.3 9.0 4.2 9.4 6.2 0.0 2.1 1 1 1 2 2 2 0 TMEM238 protein family DUF3185 PF11381.3 gi|452206495|ref|YP_007486617.1| - 1.9 8.3 6.4 3.6 7.4 3.4 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF3185) DUF1469 PF07332.6 gi|452206495|ref|YP_007486617.1| - 5 6.8 11.0 5.7 6.7 7.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) Rhomboid PF01694.17 gi|452206496|ref|YP_007486618.1| - 6.6e-29 100.8 15.3 6.6e-29 100.8 10.6 1.4 2 0 0 2 2 2 1 Rhomboid family zf-AN1 PF01428.11 gi|452206496|ref|YP_007486618.1| - 1.8e-14 53.2 6.2 2.4e-14 52.8 4.3 1.2 1 0 0 1 1 1 1 AN1-like Zinc finger zf-HIT PF04438.11 gi|452206496|ref|YP_007486618.1| - 0.0032 17.0 4.9 0.0046 16.5 3.4 1.2 1 0 0 1 1 1 1 HIT zinc finger DUF1751 PF08551.5 gi|452206496|ref|YP_007486618.1| - 0.015 15.6 4.9 0.032 14.5 0.1 2.3 1 1 0 2 2 2 0 Eukaryotic integral membrane protein (DUF1751) DUF4187 PF13821.1 gi|452206496|ref|YP_007486618.1| - 0.15 11.6 2.7 0.25 10.9 1.9 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4187) C1_3 PF07649.7 gi|452206496|ref|YP_007486618.1| - 0.23 11.5 3.2 0.39 10.7 2.2 1.3 1 0 0 1 1 1 0 C1-like domain Endonuclease_5 PF04493.9 gi|452206497|ref|YP_007486619.1| - 1.9e-42 144.9 0.0 2.5e-42 144.5 0.0 1.1 1 0 0 1 1 1 1 Endonuclease V CDK2AP PF09806.4 gi|452206497|ref|YP_007486619.1| - 0.1 12.8 0.1 0.16 12.2 0.1 1.2 1 0 0 1 1 1 0 Cyclin-dependent kinase 2-associated protein adh_short PF00106.20 gi|452206498|ref|YP_007486620.1| - 1.8e-34 119.0 0.2 2.8e-34 118.4 0.0 1.4 2 0 0 2 2 2 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|452206498|ref|YP_007486620.1| - 9.5e-22 77.9 0.0 1.2e-21 77.5 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|452206498|ref|YP_007486620.1| - 6.3e-14 52.0 0.0 9.7e-14 51.4 0.0 1.3 1 0 0 1 1 1 1 KR domain NAD_binding_10 PF13460.1 gi|452206498|ref|YP_007486620.1| - 6.3e-07 29.5 2.0 1.2e-06 28.6 1.4 1.5 1 1 0 1 1 1 1 NADH(P)-binding DUF1776 PF08643.5 gi|452206498|ref|YP_007486620.1| - 5.6e-05 22.4 0.0 6.4e-05 22.2 0.0 1.1 1 0 0 1 1 1 1 Fungal family of unknown function (DUF1776) Epimerase PF01370.16 gi|452206498|ref|YP_007486620.1| - 0.00015 21.2 0.0 0.00051 19.5 0.0 1.9 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|452206498|ref|YP_007486620.1| - 0.0021 17.0 0.0 0.0035 16.2 0.0 1.3 1 0 0 1 1 1 1 RmlD substrate binding domain Eno-Rase_NADH_b PF12242.3 gi|452206498|ref|YP_007486620.1| - 0.0027 17.4 0.0 0.0071 16.1 0.0 1.6 1 0 0 1 1 1 1 NAD(P)H binding domain of trans-2-enoyl-CoA reductase DUF3320 PF11784.3 gi|452206498|ref|YP_007486620.1| - 0.089 12.3 0.1 0.29 10.7 0.0 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF3320) HisKA PF00512.20 gi|452206498|ref|YP_007486620.1| - 0.17 11.8 0.2 7.2 6.6 0.1 2.3 2 0 0 2 2 2 0 His Kinase A (phospho-acceptor) domain DUF4147 PF13660.1 gi|452206499|ref|YP_007486621.1| - 8.5e-72 241.1 2.5 8.5e-72 241.1 1.7 2.2 3 0 0 3 3 3 1 Domain of unknown function (DUF4147) MOFRL PF05161.8 gi|452206499|ref|YP_007486621.1| - 4.3e-26 91.1 2.2 4.3e-26 91.1 1.5 2.0 2 0 0 2 2 2 1 MOFRL family YtxH PF12732.2 gi|452206499|ref|YP_007486621.1| - 0.039 14.3 1.3 0.088 13.1 0.9 1.6 1 0 0 1 1 1 0 YtxH-like protein ArsA_ATPase PF02374.10 gi|452206500|ref|YP_007486622.1| - 4.2e-73 246.0 0.0 6.3e-72 242.1 0.0 2.3 1 1 0 1 1 1 1 Anion-transporting ATPase CbiA PF01656.18 gi|452206500|ref|YP_007486622.1| - 1.1e-07 31.4 0.0 3.8e-07 29.6 0.0 1.8 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|452206500|ref|YP_007486622.1| - 5.5e-05 23.1 0.1 0.0045 16.9 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|452206500|ref|YP_007486622.1| - 0.0049 16.3 1.0 0.031 13.6 0.1 2.3 2 0 0 2 2 2 1 AAA domain Apolipoprotein PF01442.13 gi|452206501|ref|YP_007486623.1| - 1.1e-06 28.3 18.1 0.00037 20.0 13.3 1.9 1 1 1 2 2 2 2 Apolipoprotein A1/A4/E domain ApoLp-III PF07464.6 gi|452206501|ref|YP_007486623.1| - 3e-05 24.0 14.2 3.9e-05 23.7 8.7 1.8 2 0 0 2 2 2 1 Apolipophorin-III precursor (apoLp-III) DUF883 PF05957.8 gi|452206501|ref|YP_007486623.1| - 0.00019 21.7 13.0 0.0062 16.9 5.2 3.2 2 1 0 3 3 3 1 Bacterial protein of unknown function (DUF883) DUF2884 PF11101.3 gi|452206501|ref|YP_007486623.1| - 0.00091 18.6 13.7 0.00091 18.6 9.5 1.4 2 0 0 2 2 1 1 Protein of unknown function (DUF2884) YtxH PF12732.2 gi|452206501|ref|YP_007486623.1| - 0.0012 19.1 11.7 7.4 7.0 8.1 3.8 1 1 0 1 1 1 0 YtxH-like protein Baculo_PEP_C PF04513.7 gi|452206501|ref|YP_007486623.1| - 0.0018 18.1 10.6 0.035 13.9 1.7 2.4 2 1 1 3 3 2 2 Baculovirus polyhedron envelope protein, PEP, C terminus Prominin PF05478.6 gi|452206501|ref|YP_007486623.1| - 0.0053 14.3 2.4 0.0071 13.9 1.7 1.2 1 0 0 1 1 1 1 Prominin DUF3584 PF12128.3 gi|452206501|ref|YP_007486623.1| - 0.0082 13.5 14.0 0.0023 15.3 8.0 1.3 2 0 0 2 2 2 1 Protein of unknown function (DUF3584) MIS13 PF08202.6 gi|452206501|ref|YP_007486623.1| - 0.017 14.1 3.2 4.4 6.2 3.2 2.1 1 1 1 2 2 2 0 Mis12-Mtw1 protein family NPV_P10 PF05531.7 gi|452206501|ref|YP_007486623.1| - 0.018 15.2 10.6 0.055 13.7 2.5 3.2 2 1 3 5 5 4 0 Nucleopolyhedrovirus P10 protein Spc7 PF08317.6 gi|452206501|ref|YP_007486623.1| - 0.021 13.5 12.9 0.03 12.9 9.0 1.3 1 0 0 1 1 1 0 Spc7 kinetochore protein ISG65-75 PF11727.3 gi|452206501|ref|YP_007486623.1| - 0.028 13.4 9.3 0.065 12.2 5.6 1.9 1 1 1 2 2 2 0 Invariant surface glycoprotein Phage_GPO PF05929.6 gi|452206501|ref|YP_007486623.1| - 0.032 13.5 10.4 0.0077 15.5 5.4 1.4 2 0 0 2 2 1 0 Phage capsid scaffolding protein (GPO) serine peptidase Exo70 PF03081.10 gi|452206501|ref|YP_007486623.1| - 0.039 12.7 6.0 0.56 8.9 0.1 2.4 1 1 1 2 2 2 0 Exo70 exocyst complex subunit Syntaxin-6_N PF09177.6 gi|452206501|ref|YP_007486623.1| - 0.043 14.2 13.2 1.5 9.2 4.8 3.0 2 1 2 4 4 3 0 Syntaxin 6, N-terminal Flagellar_rod PF05149.7 gi|452206501|ref|YP_007486623.1| - 0.052 12.7 13.0 0.065 12.4 8.1 1.8 2 0 0 2 2 2 0 Paraflagellar rod protein DUF2580 PF10824.3 gi|452206501|ref|YP_007486623.1| - 0.054 13.8 7.8 0.4 11.0 2.5 3.3 1 1 3 4 4 4 0 Protein of unknown function (DUF2580) SF-assemblin PF06705.6 gi|452206501|ref|YP_007486623.1| - 0.06 12.4 11.6 0.12 11.5 8.1 1.5 1 0 0 1 1 1 0 SF-assemblin/beta giardin DUF2317 PF10079.4 gi|452206501|ref|YP_007486623.1| - 0.064 11.8 9.0 0.13 10.8 6.2 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2317) DUF3502 PF12010.3 gi|452206501|ref|YP_007486623.1| - 0.1 12.5 10.3 1.5 8.8 0.0 4.2 1 1 3 4 4 4 0 Domain of unknown function (DUF3502) AAA_13 PF13166.1 gi|452206501|ref|YP_007486623.1| - 0.12 10.7 8.1 0.17 10.2 5.6 1.2 1 0 0 1 1 1 0 AAA domain PilJ PF13675.1 gi|452206501|ref|YP_007486623.1| - 0.13 12.5 9.4 0.27 11.5 4.8 2.5 1 1 1 2 2 2 0 Type IV pili methyl-accepting chemotaxis transducer N-term Aida_N PF08910.5 gi|452206501|ref|YP_007486623.1| - 0.14 12.4 4.0 0.44 10.8 1.9 2.3 1 1 1 2 2 2 0 Aida N-terminus Herpes_UL6 PF01763.11 gi|452206501|ref|YP_007486623.1| - 0.15 10.2 2.7 0.18 9.9 1.8 1.1 1 0 0 1 1 1 0 Herpesvirus UL6 like Cob_adeno_trans PF01923.13 gi|452206501|ref|YP_007486623.1| - 0.16 11.7 6.0 0.34 10.6 4.2 1.6 1 0 0 1 1 1 0 Cobalamin adenosyltransferase EIAV_Rev PF11129.3 gi|452206501|ref|YP_007486623.1| - 0.18 11.8 0.7 0.36 10.8 0.5 1.6 2 0 0 2 2 1 0 Rev protein of equine infectious anaemia virus SPX PF03105.14 gi|452206501|ref|YP_007486623.1| - 0.24 11.1 8.6 0.42 10.3 6.0 1.4 1 0 0 1 1 1 0 SPX domain Dna2 PF08696.6 gi|452206501|ref|YP_007486623.1| - 0.24 10.7 2.9 0.35 10.1 2.0 1.5 1 0 0 1 1 1 0 DNA replication factor Dna2 HAUS-augmin3 PF14932.1 gi|452206501|ref|YP_007486623.1| - 0.25 10.5 15.2 0.42 9.7 10.6 1.4 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 3 KicB PF03882.9 gi|452206501|ref|YP_007486623.1| - 0.28 9.7 6.0 0.88 8.1 4.1 1.6 1 1 0 1 1 1 0 KicB killing factor CAP_N PF01213.14 gi|452206501|ref|YP_007486623.1| - 0.35 10.1 2.7 0.23 10.6 0.9 1.5 2 0 0 2 2 1 0 Adenylate cyclase associated (CAP) N terminal Transposase_22 PF02994.9 gi|452206501|ref|YP_007486623.1| - 0.48 8.8 13.2 2.3 6.6 8.8 1.9 1 1 1 2 2 2 0 L1 transposable element CSS-motif PF12792.2 gi|452206501|ref|YP_007486623.1| - 0.5 9.6 7.7 0.19 11.0 1.8 2.3 2 1 0 2 2 2 0 CSS motif domain associated with EAL DUF1664 PF07889.7 gi|452206501|ref|YP_007486623.1| - 0.6 9.9 9.2 0.39 10.5 3.1 2.4 1 1 2 3 3 3 0 Protein of unknown function (DUF1664) Atg14 PF10186.4 gi|452206501|ref|YP_007486623.1| - 0.62 8.9 5.0 0.82 8.5 3.5 1.3 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 KxDL PF10241.4 gi|452206501|ref|YP_007486623.1| - 0.7 9.8 10.8 1.2 9.0 1.6 2.8 2 1 1 3 3 3 0 Uncharacterized conserved protein Phasin PF05597.6 gi|452206501|ref|YP_007486623.1| - 0.9 9.3 14.7 2.2 8.0 2.8 3.0 1 1 3 4 4 4 0 Poly(hydroxyalcanoate) granule associated protein (phasin) DUF2422 PF10337.4 gi|452206501|ref|YP_007486623.1| - 0.99 8.1 3.1 0.97 8.1 2.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2422) DUF3508 PF12018.3 gi|452206501|ref|YP_007486623.1| - 1.1 8.2 7.1 1.9 7.3 4.9 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3508) Spectrin PF00435.16 gi|452206501|ref|YP_007486623.1| - 1.2 9.4 18.3 0.2 11.9 9.0 2.4 2 1 0 2 2 1 0 Spectrin repeat Tweety PF04906.8 gi|452206501|ref|YP_007486623.1| - 1.3 7.4 5.7 1.2 7.5 2.4 1.8 1 1 1 2 2 2 0 Tweety Mnd1 PF03962.10 gi|452206501|ref|YP_007486623.1| - 1.5 8.4 13.8 2.6 7.6 8.3 2.2 2 1 0 2 2 2 0 Mnd1 family PhaP_Bmeg PF09602.5 gi|452206501|ref|YP_007486623.1| - 1.6 8.5 13.2 0.51 10.1 5.5 2.3 2 1 1 3 3 2 0 Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg) Hemerythrin PF01814.18 gi|452206501|ref|YP_007486623.1| - 1.6 8.8 16.6 3.5 7.7 1.0 2.4 1 1 1 2 2 2 0 Hemerythrin HHE cation binding domain DUF4407 PF14362.1 gi|452206501|ref|YP_007486623.1| - 1.7 7.5 12.0 0.44 9.4 6.3 1.4 2 0 0 2 2 1 0 Domain of unknown function (DUF4407) DUF342 PF03961.8 gi|452206501|ref|YP_007486623.1| - 1.8 6.8 7.4 2.4 6.4 5.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF342) Dak2 PF02734.12 gi|452206501|ref|YP_007486623.1| - 1.9 8.0 10.0 3.1 7.4 5.1 2.4 1 1 0 2 2 2 0 DAK2 domain MRFAP1 PF15155.1 gi|452206501|ref|YP_007486623.1| - 2.1 8.7 12.9 1.2 9.5 6.7 1.9 2 0 0 2 2 2 0 MORF4 family-associated protein1 Reo_sigmaC PF04582.7 gi|452206501|ref|YP_007486623.1| - 2.3 7.3 4.9 2.3 7.3 2.7 1.5 1 1 0 1 1 1 0 Reovirus sigma C capsid protein XhlA PF10779.4 gi|452206501|ref|YP_007486623.1| - 2.5 8.0 15.5 1.8 8.5 0.4 2.6 3 0 0 3 3 2 0 Haemolysin XhlA DUF16 PF01519.11 gi|452206501|ref|YP_007486623.1| - 2.5 8.3 9.0 13 6.0 6.3 2.3 1 1 0 1 1 1 0 Protein of unknown function DUF16 COG2 PF06148.6 gi|452206501|ref|YP_007486623.1| - 2.6 7.9 13.9 1.2e+02 2.5 7.7 3.3 2 1 0 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 Nbl1_Borealin_N PF10444.4 gi|452206501|ref|YP_007486623.1| - 3 7.2 6.7 0.38 10.1 1.1 2.3 3 0 0 3 3 1 0 Nbl1 / Borealin N terminal ATP-synt_B PF00430.13 gi|452206501|ref|YP_007486623.1| - 3.2 7.5 18.6 6.9 6.4 11.1 2.3 2 1 0 2 2 2 0 ATP synthase B/B' CF(0) AAA_23 PF13476.1 gi|452206501|ref|YP_007486623.1| - 3.6 7.8 11.3 5.3 7.3 7.8 1.4 1 1 0 1 1 1 0 AAA domain Xpo1 PF08389.7 gi|452206501|ref|YP_007486623.1| - 4.2 7.2 6.2 12 5.8 4.3 1.8 1 1 0 1 1 1 0 Exportin 1-like protein DUF3135 PF11333.3 gi|452206501|ref|YP_007486623.1| - 4.4 7.5 11.8 0.79 9.9 1.3 3.3 2 1 0 3 3 3 0 Protein of unknown function (DUF3135) Iron_permease PF04120.7 gi|452206501|ref|YP_007486623.1| - 4.9 6.7 7.9 4.3 6.9 4.4 1.8 1 1 0 1 1 1 0 Low affinity iron permease DUF4226 PF10774.4 gi|452206501|ref|YP_007486623.1| - 5.4 7.1 15.0 18 5.4 0.1 3.6 1 1 2 3 3 3 0 Domain of unknown function (DUF4226) DUF4533 PF15047.1 gi|452206501|ref|YP_007486623.1| - 5.4 6.3 9.2 1.6 8.1 2.8 2.1 2 1 1 3 3 2 0 Protein of unknown function (DUF4533) APG6 PF04111.7 gi|452206501|ref|YP_007486623.1| - 6.1 5.7 17.4 9.2 5.2 12.1 1.3 1 0 0 1 1 1 0 Autophagy protein Apg6 DUF948 PF06103.6 gi|452206501|ref|YP_007486623.1| - 6.9 6.6 10.6 13 5.7 5.6 2.7 2 1 0 2 2 1 0 Bacterial protein of unknown function (DUF948) Prefoldin_2 PF01920.15 gi|452206501|ref|YP_007486623.1| - 7.1 6.4 21.4 9.7 6.0 7.6 3.2 2 1 1 3 3 2 0 Prefoldin subunit Peptidase_C6 PF00851.13 gi|452206501|ref|YP_007486623.1| - 8 4.9 8.2 11 4.4 5.7 1.1 1 0 0 1 1 1 0 Helper component proteinase DUF2229 PF09989.4 gi|452206501|ref|YP_007486623.1| - 8.9 5.7 6.3 14 5.0 2.5 2.3 1 1 0 2 2 2 0 CoA enzyme activase uncharacterised domain (DUF2229) Prefoldin PF02996.12 gi|452206501|ref|YP_007486623.1| - 8.9 5.9 19.3 2.9 7.5 2.5 3.6 2 1 1 3 3 3 0 Prefoldin subunit Acyl-CoA_dh_C PF12806.2 gi|452206501|ref|YP_007486623.1| - 10 6.0 14.3 7.3 6.4 4.4 2.7 2 1 1 3 3 2 0 Acetyl-CoA dehydrogenase C-terminal like ScpA_ScpB PF02616.9 gi|452206502|ref|YP_007486624.1| - 8.6e-23 81.1 0.0 1.1e-21 77.5 0.0 2.0 1 1 0 1 1 1 1 ScpA/B protein SMC_N PF02463.14 gi|452206503|ref|YP_007486625.1| - 2.8e-58 196.7 14.4 5.4e-58 195.8 10.0 1.5 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain SMC_hinge PF06470.8 gi|452206503|ref|YP_007486625.1| - 1.6e-28 99.1 0.0 5.3e-28 97.3 0.0 2.0 1 0 0 1 1 1 1 SMC proteins Flexible Hinge Domain AAA_13 PF13166.1 gi|452206503|ref|YP_007486625.1| - 4.1e-13 48.7 88.0 0.0018 16.8 7.5 6.6 3 2 4 7 7 7 6 AAA domain AAA_21 PF13304.1 gi|452206503|ref|YP_007486625.1| - 4e-12 46.7 7.7 1e-06 28.9 0.0 3.9 4 0 0 4 4 4 2 AAA domain Reo_sigmaC PF04582.7 gi|452206503|ref|YP_007486625.1| - 8.2e-12 44.9 24.3 0.00017 20.8 1.6 6.0 2 2 5 7 7 7 6 Reovirus sigma C capsid protein IncA PF04156.9 gi|452206503|ref|YP_007486625.1| - 3.6e-09 36.5 143.1 0.013 15.1 16.6 8.2 2 2 6 8 8 8 5 IncA protein AAA_15 PF13175.1 gi|452206503|ref|YP_007486625.1| - 3.4e-07 29.6 8.6 0.00097 18.2 0.0 3.6 3 0 0 3 3 2 2 AAA ATPase domain GAS PF13851.1 gi|452206503|ref|YP_007486625.1| - 1.1e-05 24.7 107.1 0.00038 19.7 3.0 7.3 2 2 5 7 7 7 5 Growth-arrest specific micro-tubule binding FliD_N PF02465.13 gi|452206503|ref|YP_007486625.1| - 1.7e-05 25.1 15.0 0.064 13.6 0.2 6.6 4 2 2 6 6 6 1 Flagellar hook-associated protein 2 N-terminus DUF3584 PF12128.3 gi|452206503|ref|YP_007486625.1| - 6.3e-05 20.5 120.6 0.0059 14.0 31.4 4.1 2 2 2 4 4 4 4 Protein of unknown function (DUF3584) CENP-F_leu_zip PF10473.4 gi|452206503|ref|YP_007486625.1| - 6.5e-05 22.8 150.7 0.036 13.9 10.9 9.0 2 2 7 9 9 9 5 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 AAA_29 PF13555.1 gi|452206503|ref|YP_007486625.1| - 9.6e-05 21.8 1.4 0.00015 21.2 0.0 1.9 2 0 0 2 2 2 1 P-loop containing region of AAA domain Fib_alpha PF08702.5 gi|452206503|ref|YP_007486625.1| - 0.00012 22.1 4.5 0.00012 22.1 3.1 6.7 3 2 4 7 7 7 3 Fibrinogen alpha/beta chain family Spc7 PF08317.6 gi|452206503|ref|YP_007486625.1| - 0.0012 17.5 107.6 0.24 9.9 11.8 6.4 2 2 4 6 6 6 6 Spc7 kinetochore protein DUF465 PF04325.8 gi|452206503|ref|YP_007486625.1| - 0.0016 18.0 6.1 0.0016 18.0 4.2 9.0 11 1 0 11 11 7 2 Protein of unknown function (DUF465) Myosin_tail_1 PF01576.14 gi|452206503|ref|YP_007486625.1| - 0.0031 15.3 154.1 0.0098 13.6 54.5 3.1 2 1 1 3 3 3 2 Myosin tail BLOC1_2 PF10046.4 gi|452206503|ref|YP_007486625.1| - 0.0052 16.8 66.8 0.045 13.8 0.0 10.3 4 3 3 11 11 10 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 Baculo_PEP_C PF04513.7 gi|452206503|ref|YP_007486625.1| - 0.0075 16.0 28.3 2.1 8.1 0.1 7.1 4 2 2 6 6 6 2 Baculovirus polyhedron envelope protein, PEP, C terminus APG6 PF04111.7 gi|452206503|ref|YP_007486625.1| - 0.018 14.0 132.7 0.019 14.0 18.3 7.8 2 2 7 9 9 9 0 Autophagy protein Apg6 AAA_23 PF13476.1 gi|452206503|ref|YP_007486625.1| - 0.019 15.2 117.9 1e+03 -0.2 43.1 7.1 2 2 0 2 2 1 0 AAA domain MscS_porin PF12795.2 gi|452206503|ref|YP_007486625.1| - 0.032 13.5 100.5 0.16 11.2 8.2 4.8 2 2 2 4 4 4 0 Mechanosensitive ion channel porin domain ATG16 PF08614.6 gi|452206503|ref|YP_007486625.1| - 0.042 13.6 119.9 0.055 13.2 6.4 7.9 2 2 5 7 7 7 0 Autophagy protein 16 (ATG16) Mnd1 PF03962.10 gi|452206503|ref|YP_007486625.1| - 0.098 12.3 111.4 0.12 12.0 5.7 8.1 2 2 3 6 6 6 0 Mnd1 family WEMBL PF05701.6 gi|452206503|ref|YP_007486625.1| - 0.18 10.2 135.3 0.087 11.2 34.2 4.4 2 2 1 3 3 3 0 Weak chloroplast movement under blue light DUF869 PF05911.6 gi|452206503|ref|YP_007486625.1| - 0.29 9.3 107.1 0.83 7.8 23.8 5.1 2 2 2 4 4 4 0 Plant protein of unknown function (DUF869) DUF1664 PF07889.7 gi|452206503|ref|YP_007486625.1| - 1.4 8.7 72.3 0.034 13.9 4.1 8.5 2 2 6 8 8 8 0 Protein of unknown function (DUF1664) Laminin_II PF06009.7 gi|452206503|ref|YP_007486625.1| - 1.4 8.6 65.9 0.012 15.3 1.9 8.3 2 2 5 9 9 9 0 Laminin Domain II DUF948 PF06103.6 gi|452206503|ref|YP_007486625.1| - 2 8.3 24.0 4.1 7.3 0.4 7.3 5 2 2 8 8 8 0 Bacterial protein of unknown function (DUF948) Cast PF10174.4 gi|452206503|ref|YP_007486625.1| - 9.4 4.1 137.4 0.9 7.5 0.3 4.8 2 2 2 4 4 4 0 RIM-binding protein of the cytomatrix active zone SlyX PF04102.7 gi|452206504|ref|YP_007486626.1| - 0.00055 20.2 0.5 0.00092 19.5 0.3 1.5 1 1 0 1 1 1 1 SlyX Tropomyosin PF00261.15 gi|452206504|ref|YP_007486626.1| - 0.0025 16.9 0.2 0.0025 16.9 0.2 1.4 2 0 0 2 2 2 1 Tropomyosin FlaC_arch PF05377.6 gi|452206504|ref|YP_007486626.1| - 0.017 15.0 0.6 0.024 14.5 0.4 1.2 1 0 0 1 1 1 0 Flagella accessory protein C (FlaC) TMF_DNA_bd PF12329.3 gi|452206504|ref|YP_007486626.1| - 0.023 14.5 0.2 0.042 13.6 0.1 1.4 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding DUF972 PF06156.8 gi|452206504|ref|YP_007486626.1| - 0.063 13.6 0.1 0.072 13.4 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF972) HSBP1 PF06825.7 gi|452206504|ref|YP_007486626.1| - 0.098 12.2 0.1 0.17 11.5 0.1 1.4 1 0 0 1 1 1 0 Heat shock factor binding protein 1 Tektin PF03148.9 gi|452206504|ref|YP_007486626.1| - 0.1 11.1 1.1 0.12 10.9 0.7 1.0 1 0 0 1 1 1 0 Tektin family DUF1664 PF07889.7 gi|452206504|ref|YP_007486626.1| - 0.15 11.9 0.0 0.21 11.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) Spc24 PF08286.6 gi|452206504|ref|YP_007486626.1| - 0.63 9.7 3.3 1.6 8.4 2.3 1.8 1 1 0 1 1 1 0 Spc24 subunit of Ndc80 tRNA-synt_His PF13393.1 gi|452206505|ref|YP_007486627.1| - 7.3e-53 179.6 0.0 8.8e-53 179.3 0.0 1.1 1 0 0 1 1 1 1 Histidyl-tRNA synthetase tRNA-synt_2b PF00587.20 gi|452206505|ref|YP_007486627.1| - 8.9e-20 70.9 0.0 1.3e-19 70.4 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|452206505|ref|YP_007486627.1| - 7e-13 48.3 0.0 1.6e-12 47.1 0.0 1.6 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2d PF01409.15 gi|452206505|ref|YP_007486627.1| - 0.035 13.2 0.0 0.083 12.0 0.0 1.5 1 1 0 1 1 1 0 tRNA synthetases class II core domain (F) Formyl_trans_N PF00551.14 gi|452206506|ref|YP_007486628.1| - 1.5e-40 138.6 0.0 5.1e-40 136.9 0.0 1.7 2 0 0 2 2 2 1 Formyl transferase ACT_6 PF13740.1 gi|452206506|ref|YP_007486628.1| - 7.3e-11 41.6 0.2 1.8e-10 40.4 0.1 1.6 1 0 0 1 1 1 1 ACT domain ACT PF01842.20 gi|452206506|ref|YP_007486628.1| - 4.8e-08 32.3 0.6 2.6e-07 29.9 0.1 2.4 3 0 0 3 3 3 1 ACT domain ACT_4 PF13291.1 gi|452206506|ref|YP_007486628.1| - 2.2e-05 24.6 0.1 5.1e-05 23.5 0.1 1.5 1 0 0 1 1 1 1 ACT domain ACT_5 PF13710.1 gi|452206506|ref|YP_007486628.1| - 0.057 13.2 0.1 0.12 12.1 0.0 1.6 1 0 0 1 1 1 0 ACT domain Glyco_transf_28 PF03033.15 gi|452206506|ref|YP_007486628.1| - 0.071 12.8 0.0 0.18 11.5 0.0 1.7 2 0 0 2 2 2 0 Glycosyltransferase family 28 N-terminal domain TMV_coat PF00721.16 gi|452206506|ref|YP_007486628.1| - 0.16 11.9 0.0 0.3 11.0 0.0 1.4 1 0 0 1 1 1 0 Virus coat protein (TMV like) DDE_Tnp_IS240 PF13610.1 gi|452206507|ref|YP_007486629.1| - 8.1e-17 61.4 0.3 1.1e-16 61.0 0.2 1.1 1 0 0 1 1 1 1 DDE domain DDE_Tnp_IS66 PF03050.9 gi|452206507|ref|YP_007486629.1| - 7.7e-05 22.0 0.1 0.00021 20.6 0.0 1.7 1 1 0 1 1 1 1 Transposase IS66 family rve PF00665.21 gi|452206507|ref|YP_007486629.1| - 0.00036 20.6 0.2 0.00059 19.9 0.2 1.4 1 0 0 1 1 1 1 Integrase core domain DDE_3 PF13358.1 gi|452206507|ref|YP_007486629.1| - 0.019 14.7 0.0 0.042 13.5 0.0 1.7 1 1 0 1 1 1 0 DDE superfamily endonuclease HTH_28 PF13518.1 gi|452206507|ref|YP_007486629.1| - 0.026 14.5 0.0 1.1 9.3 0.0 2.5 2 0 0 2 2 2 0 Helix-turn-helix domain Aldo_ket_red PF00248.16 gi|452206508|ref|YP_007486630.1| - 2.3e-49 167.7 0.0 2.7e-49 167.5 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family PqqD PF05402.7 gi|452206508|ref|YP_007486630.1| - 0.095 12.7 0.3 0.24 11.4 0.2 1.7 1 0 0 1 1 1 0 Coenzyme PQQ synthesis protein D (PqqD) Abhydrolase_6 PF12697.2 gi|452206508|ref|YP_007486630.1| - 0.32 10.8 3.5 0.95 9.2 2.4 1.8 1 1 0 1 1 1 0 Alpha/beta hydrolase family Hexapep PF00132.19 gi|452206509|ref|YP_007486631.1| - 1e-08 34.2 6.8 6.3e-05 22.3 0.0 3.7 4 0 0 4 4 4 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|452206509|ref|YP_007486631.1| - 0.00092 18.7 2.4 1.3 8.6 0.6 3.0 2 1 0 2 2 2 2 Hexapeptide repeat of succinyl-transferase Acyl-CoA_dh_1 PF00441.19 gi|452206510|ref|YP_007486632.1| - 2.7e-52 176.8 1.3 5.5e-52 175.8 0.9 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|452206510|ref|YP_007486632.1| - 2.1e-34 118.5 0.4 2.1e-34 118.5 0.3 2.0 2 1 0 2 2 2 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.6 gi|452206510|ref|YP_007486632.1| - 2.7e-26 92.3 1.4 6.4e-26 91.1 1.0 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.14 gi|452206510|ref|YP_007486632.1| - 1.4e-18 66.0 0.5 7e-18 63.8 0.2 2.1 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, middle domain DDE_Tnp_IS240 PF13610.1 gi|452206511|ref|YP_007486633.1| - 2.4e-16 59.9 0.2 3.4e-16 59.4 0.2 1.2 1 0 0 1 1 1 1 DDE domain rve PF00665.21 gi|452206511|ref|YP_007486633.1| - 5.8e-05 23.1 0.2 8.9e-05 22.5 0.1 1.3 1 0 0 1 1 1 1 Integrase core domain DDE_Tnp_IS66 PF03050.9 gi|452206511|ref|YP_007486633.1| - 0.00011 21.4 0.1 0.00029 20.1 0.0 1.8 1 1 0 1 1 1 1 Transposase IS66 family DDE_3 PF13358.1 gi|452206511|ref|YP_007486633.1| - 0.012 15.3 0.0 0.038 13.7 0.0 1.8 1 1 0 1 1 1 0 DDE superfamily endonuclease HTH_28 PF13518.1 gi|452206511|ref|YP_007486633.1| - 0.068 13.1 0.0 2.3 8.2 0.0 2.5 2 0 0 2 2 2 0 Helix-turn-helix domain DDE_Tnp_1 PF01609.16 gi|452206511|ref|YP_007486633.1| - 0.29 10.6 2.0 3.2 7.2 1.4 2.1 1 1 0 1 1 1 0 Transposase DDE domain Arch_ATPase PF01637.13 gi|452206512|ref|YP_007486634.1| - 7.1e-28 97.8 0.0 1.3e-27 96.9 0.0 1.5 1 1 0 1 1 1 1 Archaeal ATPase DUF234 PF03008.9 gi|452206512|ref|YP_007486634.1| - 5.1e-13 49.0 0.0 1e-12 48.0 0.0 1.5 1 0 0 1 1 1 1 Archaea bacterial proteins of unknown function AAA_14 PF13173.1 gi|452206512|ref|YP_007486634.1| - 8.6e-07 28.9 0.0 1.6e-06 27.9 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|452206512|ref|YP_007486634.1| - 2.1e-06 27.9 0.0 4.4e-06 26.8 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|452206512|ref|YP_007486634.1| - 7e-05 22.8 0.0 0.00019 21.4 0.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain Mrr_cat PF04471.7 gi|452206512|ref|YP_007486634.1| - 0.076 12.8 0.0 0.14 11.9 0.0 1.4 1 0 0 1 1 1 0 Restriction endonuclease AAA_30 PF13604.1 gi|452206512|ref|YP_007486634.1| - 0.084 12.4 0.0 0.19 11.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain HTH_11 PF08279.7 gi|452206513|ref|YP_007486635.1| - 0.00045 19.8 0.0 0.0006 19.4 0.0 1.2 1 0 0 1 1 1 1 HTH domain HTH_DeoR PF08220.7 gi|452206513|ref|YP_007486635.1| - 0.00065 19.1 0.1 0.001 18.5 0.0 1.3 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_20 PF12840.2 gi|452206513|ref|YP_007486635.1| - 0.00076 19.2 0.0 0.001 18.7 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|452206513|ref|YP_007486635.1| - 0.0024 17.4 0.3 0.0033 17.0 0.2 1.2 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|452206513|ref|YP_007486635.1| - 0.0033 16.9 0.0 0.0048 16.4 0.0 1.2 1 0 0 1 1 1 1 IclR helix-turn-helix domain Crp PF00325.15 gi|452206513|ref|YP_007486635.1| - 0.02 14.3 1.2 0.056 12.9 0.2 2.2 2 0 0 2 2 2 0 Bacterial regulatory proteins, crp family HTH_Crp_2 PF13545.1 gi|452206513|ref|YP_007486635.1| - 0.028 14.1 0.0 0.041 13.6 0.0 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain FaeA PF04703.7 gi|452206513|ref|YP_007486635.1| - 0.043 13.9 0.0 0.064 13.4 0.0 1.2 1 0 0 1 1 1 0 FaeA-like protein Rrf2 PF02082.15 gi|452206513|ref|YP_007486635.1| - 0.053 13.6 0.0 0.09 12.9 0.0 1.4 1 1 0 1 1 1 0 Transcriptional regulator GntR PF00392.16 gi|452206513|ref|YP_007486635.1| - 0.092 12.2 0.3 0.13 11.7 0.2 1.2 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family MerR PF00376.18 gi|452206513|ref|YP_007486635.1| - 0.11 12.1 0.2 0.51 9.9 0.2 2.0 1 1 0 1 1 1 0 MerR family regulatory protein TrmB PF01978.14 gi|452206513|ref|YP_007486635.1| - 0.13 11.9 0.0 0.23 11.2 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.15 gi|452206513|ref|YP_007486635.1| - 0.15 11.7 0.0 0.21 11.3 0.0 1.2 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family PIN PF01850.16 gi|452206514|ref|YP_007486636.1| - 4.8e-14 52.7 0.0 5.5e-14 52.5 0.0 1.0 1 0 0 1 1 1 1 PIN domain Antitoxin-MazE PF04014.13 gi|452206515|ref|YP_007486637.1| - 2e-07 30.5 0.1 2.6e-07 30.1 0.0 1.1 1 0 0 1 1 1 1 Antidote-toxin recognition MazE PadR PF03551.9 gi|452206516|ref|YP_007486638.1| - 0.00017 21.3 0.0 0.00023 20.8 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_34 PF13601.1 gi|452206516|ref|YP_007486638.1| - 0.0069 16.3 0.0 0.01 15.8 0.0 1.5 1 1 0 1 1 1 1 Winged helix DNA-binding domain DUF505 PF04458.7 gi|452206516|ref|YP_007486638.1| - 0.017 13.2 0.0 0.019 13.1 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF505) CENP-Q PF13094.1 gi|452206518|ref|YP_007486640.1| - 7.8e-05 22.7 1.6 0.00013 22.0 1.1 1.2 1 0 0 1 1 1 1 CENP-Q, a CENPA-CAD centromere complex subunit TMF_DNA_bd PF12329.3 gi|452206518|ref|YP_007486640.1| - 0.012 15.3 0.5 0.022 14.5 0.4 1.4 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding bZIP_1 PF00170.16 gi|452206518|ref|YP_007486640.1| - 0.07 13.0 1.2 0.38 10.7 0.6 2.0 1 1 1 2 2 2 0 bZIP transcription factor TTKRSYEDQ PF10212.4 gi|452206518|ref|YP_007486640.1| - 0.071 12.0 0.5 0.1 11.5 0.3 1.1 1 0 0 1 1 1 0 Predicted coiled-coil domain-containing protein DivIC PF04977.10 gi|452206518|ref|YP_007486640.1| - 0.078 12.4 3.2 0.13 11.7 2.2 1.3 1 0 0 1 1 1 0 Septum formation initiator FlaC_arch PF05377.6 gi|452206518|ref|YP_007486640.1| - 0.11 12.3 0.1 0.21 11.5 0.0 1.4 1 0 0 1 1 1 0 Flagella accessory protein C (FlaC) DUF641 PF04859.7 gi|452206518|ref|YP_007486640.1| - 0.11 12.1 0.1 0.2 11.3 0.0 1.3 1 0 0 1 1 1 0 Plant protein of unknown function (DUF641) CASP_C PF08172.7 gi|452206518|ref|YP_007486640.1| - 0.19 10.7 1.3 0.33 9.9 0.9 1.3 1 0 0 1 1 1 0 CASP C terminal DUF4140 PF13600.1 gi|452206518|ref|YP_007486640.1| - 0.2 12.1 3.4 0.53 10.7 2.4 1.7 1 0 0 1 1 1 0 N-terminal domain of unknown function (DUF4140) Atg14 PF10186.4 gi|452206518|ref|YP_007486640.1| - 0.27 10.1 0.2 0.39 9.6 0.1 1.1 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 Tropomyosin_1 PF12718.2 gi|452206518|ref|YP_007486640.1| - 0.3 10.9 4.0 0.52 10.1 2.8 1.3 1 0 0 1 1 1 0 Tropomyosin like IncA PF04156.9 gi|452206518|ref|YP_007486640.1| - 0.31 10.6 1.9 0.5 9.9 1.3 1.2 1 0 0 1 1 1 0 IncA protein APG6 PF04111.7 gi|452206518|ref|YP_007486640.1| - 0.36 9.8 0.6 0.52 9.3 0.4 1.1 1 0 0 1 1 1 0 Autophagy protein Apg6 GrpE PF01025.14 gi|452206518|ref|YP_007486640.1| - 0.42 10.1 2.4 0.71 9.4 1.6 1.2 1 0 0 1 1 1 0 GrpE Mnd1 PF03962.10 gi|452206518|ref|YP_007486640.1| - 0.48 10.0 0.7 0.73 9.4 0.5 1.2 1 0 0 1 1 1 0 Mnd1 family SlyX PF04102.7 gi|452206518|ref|YP_007486640.1| - 4.7 7.6 5.0 0.48 10.8 0.3 1.7 2 0 0 2 2 1 0 SlyX TrbC PF04956.8 gi|452206520|ref|YP_007486642.1| - 0.053 13.5 0.4 0.054 13.5 0.3 1.0 1 0 0 1 1 1 0 TrbC/VIRB2 family IL13 PF03487.8 gi|452206520|ref|YP_007486642.1| - 0.54 10.0 2.2 0.9 9.3 1.5 1.4 1 1 0 1 1 1 0 Interleukin-13 TAT_signal PF10518.4 gi|452206520|ref|YP_007486642.1| - 1.4 9.1 4.2 2 8.6 2.9 1.2 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence DDE_Tnp_IS240 PF13610.1 gi|452206521|ref|YP_007486643.1| - 6.3e-12 45.6 0.6 1e-11 45.0 0.4 1.3 1 0 0 1 1 1 1 DDE domain DDE_Tnp_IS66 PF03050.9 gi|452206521|ref|YP_007486643.1| - 0.03 13.5 0.1 0.14 11.4 0.0 2.0 1 1 0 1 1 1 0 Transposase IS66 family Fe_dep_repress PF01325.14 gi|452206522|ref|YP_007486644.1| - 2.5e-17 62.5 0.1 5.4e-17 61.4 0.0 1.6 2 0 0 2 2 1 1 Iron dependent repressor, N-terminal DNA binding domain Fe_dep_repr_C PF02742.10 gi|452206522|ref|YP_007486644.1| - 4.4e-11 42.2 0.3 7.9e-11 41.4 0.1 1.5 1 1 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain HTH_27 PF13463.1 gi|452206522|ref|YP_007486644.1| - 8.1e-08 32.4 0.0 1.7e-07 31.4 0.0 1.5 2 0 0 2 2 1 1 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|452206522|ref|YP_007486644.1| - 1.7e-06 27.6 0.0 2.7e-06 26.9 0.0 1.4 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|452206522|ref|YP_007486644.1| - 0.0001 21.9 0.0 0.00017 21.2 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.1 gi|452206522|ref|YP_007486644.1| - 0.00017 21.2 0.0 0.0005 19.7 0.0 1.8 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_24 PF13412.1 gi|452206522|ref|YP_007486644.1| - 0.00048 19.4 0.0 0.00079 18.7 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.5 gi|452206522|ref|YP_007486644.1| - 0.00077 19.0 0.0 0.0014 18.1 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR PF01047.17 gi|452206522|ref|YP_007486644.1| - 0.00097 18.7 0.0 0.0016 18.0 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|452206522|ref|YP_007486644.1| - 0.0079 15.9 0.0 0.015 15.0 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain Rrf2 PF02082.15 gi|452206522|ref|YP_007486644.1| - 0.012 15.7 0.0 0.018 15.1 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator HTH_13 PF11972.3 gi|452206522|ref|YP_007486644.1| - 0.013 15.3 0.0 0.024 14.4 0.0 1.4 1 0 0 1 1 1 0 HTH DNA binding domain HTH_AsnC-type PF13404.1 gi|452206522|ref|YP_007486644.1| - 0.025 14.1 0.0 0.068 12.7 0.0 1.8 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain FeoC PF09012.5 gi|452206522|ref|YP_007486644.1| - 0.034 13.8 0.1 0.13 11.9 0.0 1.9 2 1 0 2 2 2 0 FeoC like transcriptional regulator GntR PF00392.16 gi|452206522|ref|YP_007486644.1| - 0.059 12.8 0.0 0.16 11.4 0.0 1.7 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family LexA_DNA_bind PF01726.11 gi|452206522|ref|YP_007486644.1| - 0.067 12.7 0.0 0.13 11.8 0.0 1.4 1 0 0 1 1 1 0 LexA DNA binding domain HTH_10 PF04967.7 gi|452206522|ref|YP_007486644.1| - 0.11 12.0 0.0 0.23 11.0 0.0 1.5 1 0 0 1 1 1 0 HTH DNA binding domain HTH_23 PF13384.1 gi|452206522|ref|YP_007486644.1| - 0.13 11.9 0.0 0.34 10.6 0.0 1.8 1 0 0 1 1 1 0 Homeodomain-like domain EAP30 PF04157.11 gi|452206522|ref|YP_007486644.1| - 0.13 11.3 0.1 0.31 10.1 0.0 1.6 2 0 0 2 2 2 0 EAP30/Vps36 family Rubrerythrin PF02915.12 gi|452206523|ref|YP_007486645.1| - 0.00025 21.3 0.5 0.00036 20.8 0.3 1.3 1 1 0 1 1 1 1 Rubrerythrin DUF892 PF05974.7 gi|452206523|ref|YP_007486645.1| - 0.071 12.9 1.6 0.24 11.1 0.2 2.3 2 1 1 3 3 3 0 Domain of unknown function (DUF892) Ferritin PF00210.19 gi|452206523|ref|YP_007486645.1| - 0.14 11.9 4.2 0.42 10.3 0.5 2.1 1 1 1 2 2 2 0 Ferritin-like domain FUSC PF04632.7 gi|452206523|ref|YP_007486645.1| - 0.23 9.8 0.6 0.33 9.3 0.4 1.2 1 0 0 1 1 1 0 Fusaric acid resistance protein family AAA_16 PF13191.1 gi|452206523|ref|YP_007486645.1| - 0.28 11.1 3.9 0.052 13.5 0.5 1.4 2 0 0 2 2 2 0 AAA ATPase domain UPF0051 PF01458.12 gi|452206524|ref|YP_007486646.1| - 1.4e-61 207.9 2.2 1.7e-61 207.6 1.5 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) UPF0051 PF01458.12 gi|452206525|ref|YP_007486647.1| - 5.2e-71 238.7 0.5 8.6e-71 238.0 0.4 1.3 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) ABC_tran PF00005.22 gi|452206526|ref|YP_007486648.1| - 6.4e-15 55.6 0.0 1.5e-14 54.4 0.0 1.6 1 1 0 1 1 1 1 ABC transporter SMC_N PF02463.14 gi|452206526|ref|YP_007486648.1| - 1.7e-05 24.2 0.3 0.081 12.1 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_17 PF13207.1 gi|452206526|ref|YP_007486648.1| - 2.4e-05 25.1 0.6 0.00058 20.6 0.0 2.6 2 2 0 2 2 2 1 AAA domain AAA_21 PF13304.1 gi|452206526|ref|YP_007486648.1| - 3.8e-05 23.7 0.5 0.0049 16.8 0.0 2.2 1 1 0 2 2 2 1 AAA domain AAA PF00004.24 gi|452206526|ref|YP_007486648.1| - 0.00012 22.2 0.1 0.09 12.9 0.0 2.3 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.1 gi|452206526|ref|YP_007486648.1| - 0.00095 18.6 0.1 0.0019 17.7 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_5 PF07728.9 gi|452206526|ref|YP_007486648.1| - 0.0046 16.6 0.1 2.3 7.9 0.0 2.4 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_23 PF13476.1 gi|452206526|ref|YP_007486648.1| - 0.0067 16.7 0.7 0.039 14.2 0.0 2.1 2 1 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|452206526|ref|YP_007486648.1| - 0.0084 16.2 0.1 0.44 10.6 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|452206526|ref|YP_007486648.1| - 0.023 14.5 0.0 0.035 13.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|452206526|ref|YP_007486648.1| - 0.067 13.4 0.7 0.19 12.0 0.1 2.2 1 1 1 2 2 2 0 AAA domain AAA_25 PF13481.1 gi|452206526|ref|YP_007486648.1| - 0.07 12.5 0.0 0.17 11.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|452206526|ref|YP_007486648.1| - 0.075 12.9 0.0 0.49 10.3 0.0 2.2 2 0 0 2 2 2 0 AAA domain Zeta_toxin PF06414.7 gi|452206526|ref|YP_007486648.1| - 0.081 12.0 0.0 0.36 9.8 0.0 1.8 2 0 0 2 2 2 0 Zeta toxin AAA_13 PF13166.1 gi|452206526|ref|YP_007486648.1| - 0.14 10.5 0.0 0.18 10.2 0.0 1.2 1 0 0 1 1 1 0 AAA domain DNA_pol_B PF00136.16 gi|452206527|ref|YP_007486649.1| - 7e-55 186.6 0.0 1.6e-36 126.0 0.0 2.4 2 1 0 2 2 2 2 DNA polymerase family B DNA_pol_B_exo1 PF03104.14 gi|452206527|ref|YP_007486649.1| - 2.4e-33 115.3 0.0 4.1e-33 114.6 0.0 1.4 1 0 0 1 1 1 1 DNA polymerase family B, exonuclease domain MarR_2 PF12802.2 gi|452206530|ref|YP_007486652.1| - 0.003 17.1 0.5 0.0072 15.9 0.2 1.7 1 1 1 2 2 2 1 MarR family HTH_20 PF12840.2 gi|452206530|ref|YP_007486652.1| - 0.089 12.6 0.7 0.19 11.5 0.5 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain SMC_N PF02463.14 gi|452206531|ref|YP_007486653.1| - 6.8e-17 61.4 28.3 5.2e-16 58.5 19.6 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|452206531|ref|YP_007486653.1| - 3.7e-15 56.8 54.4 1e-07 32.4 37.6 5.2 1 1 0 1 1 1 1 AAA domain AAA_21 PF13304.1 gi|452206531|ref|YP_007486653.1| - 3e-14 53.6 0.0 7.5e-09 35.9 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|452206531|ref|YP_007486653.1| - 5.2e-12 45.5 0.0 7.7e-06 25.2 0.0 2.7 3 0 0 3 3 3 2 AAA ATPase domain AAA_13 PF13166.1 gi|452206531|ref|YP_007486653.1| - 6.7e-11 41.3 47.1 0.0016 17.0 0.0 5.1 2 1 3 5 5 5 4 AAA domain AAA_29 PF13555.1 gi|452206531|ref|YP_007486653.1| - 2.2e-06 27.0 0.0 4.2e-06 26.1 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SbcCD_C PF13558.1 gi|452206531|ref|YP_007486653.1| - 6.7e-05 22.7 0.0 0.00024 20.9 0.0 2.0 1 0 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_27 PF13514.1 gi|452206531|ref|YP_007486653.1| - 0.00078 17.2 0.0 0.00078 17.2 0.0 3.5 2 1 1 3 3 3 1 AAA domain Baculo_PEP_C PF04513.7 gi|452206531|ref|YP_007486653.1| - 0.0013 18.5 11.5 0.052 13.3 0.4 4.9 4 1 1 5 5 5 1 Baculovirus polyhedron envelope protein, PEP, C terminus MAD PF05557.8 gi|452206531|ref|YP_007486653.1| - 0.0016 16.6 34.5 0.0016 16.6 23.9 3.6 1 1 2 3 3 2 1 Mitotic checkpoint protein IncA PF04156.9 gi|452206531|ref|YP_007486653.1| - 0.0063 16.1 22.6 0.0063 16.1 15.7 5.9 1 1 4 5 5 5 2 IncA protein zf-C4H2 PF10146.4 gi|452206531|ref|YP_007486653.1| - 0.011 15.8 16.7 0.011 15.8 11.6 4.5 2 1 1 4 4 4 0 Zinc finger-containing protein CBS PF00571.23 gi|452206531|ref|YP_007486653.1| - 0.019 14.7 0.0 0.046 13.5 0.0 1.7 1 0 0 1 1 1 0 CBS domain Reo_sigmaC PF04582.7 gi|452206531|ref|YP_007486653.1| - 0.062 12.4 15.2 0.47 9.5 0.6 4.5 2 2 0 4 4 4 0 Reovirus sigma C capsid protein ABC_tran PF00005.22 gi|452206531|ref|YP_007486653.1| - 0.092 13.0 0.0 0.092 13.0 0.0 4.9 3 2 0 3 3 3 0 ABC transporter LOH1CR12 PF10158.4 gi|452206531|ref|YP_007486653.1| - 0.097 12.4 3.7 5.6 6.7 0.1 4.2 4 1 1 5 5 5 0 Tumour suppressor protein Endotoxin_N PF03945.9 gi|452206531|ref|YP_007486653.1| - 0.15 11.4 0.9 0.4 10.0 0.7 1.7 1 0 0 1 1 1 0 delta endotoxin, N-terminal domain DUF35_N PF12172.3 gi|452206531|ref|YP_007486653.1| - 0.18 11.7 2.3 1.1 9.2 0.1 2.7 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) NPV_P10 PF05531.7 gi|452206531|ref|YP_007486653.1| - 0.39 11.0 16.1 8.5 6.7 0.0 6.5 5 3 1 7 7 6 0 Nucleopolyhedrovirus P10 protein DUF342 PF03961.8 gi|452206531|ref|YP_007486653.1| - 0.66 8.3 43.0 0.029 12.8 6.8 4.6 1 1 3 5 5 5 0 Protein of unknown function (DUF342) Atg14 PF10186.4 gi|452206531|ref|YP_007486653.1| - 1.6 7.5 73.2 0.54 9.1 15.2 5.9 1 1 2 4 4 4 0 UV radiation resistance protein and autophagy-related subunit 14 MRP-S28 PF10213.4 gi|452206531|ref|YP_007486653.1| - 2.7 8.0 10.9 3.5 7.7 0.1 3.7 3 0 0 3 3 3 0 Mitochondrial ribosomal subunit protein Laminin_II PF06009.7 gi|452206531|ref|YP_007486653.1| - 4.1 7.1 44.8 4.3 7.0 0.4 6.3 1 1 4 6 6 6 0 Laminin Domain II Fib_alpha PF08702.5 gi|452206531|ref|YP_007486653.1| - 5 7.2 22.0 13 5.8 3.7 4.7 3 1 1 4 4 4 0 Fibrinogen alpha/beta chain family Metallophos_2 PF12850.2 gi|452206532|ref|YP_007486654.1| - 2.3e-16 60.0 0.1 3.8e-16 59.3 0.1 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|452206532|ref|YP_007486654.1| - 6.3e-13 48.5 0.5 8.9e-13 48.0 0.3 1.4 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase GntR PF00392.16 gi|452206534|ref|YP_007486656.1| - 0.00089 18.6 0.3 0.0014 18.0 0.2 1.2 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_24 PF13412.1 gi|452206534|ref|YP_007486656.1| - 0.0011 18.3 0.1 0.0017 17.7 0.1 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|452206534|ref|YP_007486656.1| - 0.0015 18.1 0.1 0.0019 17.8 0.1 1.2 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|452206534|ref|YP_007486656.1| - 0.0018 18.5 0.1 0.0024 18.1 0.1 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_20 PF12840.2 gi|452206534|ref|YP_007486656.1| - 0.0026 17.5 0.0 0.0031 17.2 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.17 gi|452206534|ref|YP_007486656.1| - 0.01 15.5 0.1 0.013 15.1 0.0 1.1 1 0 0 1 1 1 0 MarR family HTH_43 PF09904.4 gi|452206534|ref|YP_007486656.1| - 0.043 13.6 0.0 0.05 13.4 0.0 1.1 1 0 0 1 1 1 0 Winged helix-turn helix HTH_11 PF08279.7 gi|452206534|ref|YP_007486656.1| - 0.049 13.2 0.2 0.078 12.6 0.1 1.3 1 0 0 1 1 1 0 HTH domain TFIIE_alpha PF02002.12 gi|452206534|ref|YP_007486656.1| - 0.078 12.4 0.0 0.091 12.2 0.0 1.1 1 0 0 1 1 1 0 TFIIE alpha subunit TrmB PF01978.14 gi|452206534|ref|YP_007486656.1| - 0.11 12.1 0.1 0.15 11.8 0.1 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_28 PF13518.1 gi|452206534|ref|YP_007486656.1| - 0.11 12.4 0.0 0.14 12.1 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_IclR PF09339.5 gi|452206534|ref|YP_007486656.1| - 0.12 12.0 0.3 0.16 11.5 0.2 1.3 1 1 0 1 1 1 0 IclR helix-turn-helix domain AAA PF00004.24 gi|452206535|ref|YP_007486657.1| - 2.3e-44 150.7 2.5 3.9e-44 150.0 0.1 2.5 3 0 0 3 3 3 1 ATPase family associated with various cellular activities (AAA) AAA_2 PF07724.9 gi|452206535|ref|YP_007486657.1| - 2.5e-09 37.2 0.1 8.9e-09 35.4 0.0 2.0 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) RuvB_N PF05496.7 gi|452206535|ref|YP_007486657.1| - 2.8e-07 29.8 0.1 9.1e-07 28.1 0.0 1.7 1 1 1 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus AAA_22 PF13401.1 gi|452206535|ref|YP_007486657.1| - 3.2e-06 27.3 3.2 5.7e-05 23.2 0.1 2.9 2 2 0 2 2 2 1 AAA domain AAA_5 PF07728.9 gi|452206535|ref|YP_007486657.1| - 5.1e-06 26.2 0.3 4.7e-05 23.1 0.2 2.4 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_17 PF13207.1 gi|452206535|ref|YP_007486657.1| - 7.3e-06 26.8 0.4 4.3e-05 24.3 0.0 2.4 2 1 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|452206535|ref|YP_007486657.1| - 1.3e-05 25.2 0.5 1.3e-05 25.2 0.4 3.5 2 2 0 2 2 2 1 AAA ATPase domain AAA_14 PF13173.1 gi|452206535|ref|YP_007486657.1| - 9.3e-05 22.3 0.2 0.0013 18.5 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|452206535|ref|YP_007486657.1| - 0.00014 21.7 0.2 0.00082 19.2 0.1 2.4 1 1 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|452206535|ref|YP_007486657.1| - 0.00014 21.5 0.3 0.022 14.4 0.0 2.5 1 1 0 2 2 2 1 NACHT domain AAA_19 PF13245.1 gi|452206535|ref|YP_007486657.1| - 0.00034 20.3 0.2 0.001 18.7 0.1 1.8 1 0 0 1 1 1 1 Part of AAA domain TIP49 PF06068.8 gi|452206535|ref|YP_007486657.1| - 0.00052 18.8 0.3 0.0016 17.2 0.0 1.9 2 0 0 2 2 2 1 TIP49 C-terminus IstB_IS21 PF01695.12 gi|452206535|ref|YP_007486657.1| - 0.0013 18.2 0.0 0.0031 16.9 0.0 1.7 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_18 PF13238.1 gi|452206535|ref|YP_007486657.1| - 0.0019 18.4 0.5 0.03 14.6 0.0 2.6 2 0 0 2 2 2 1 AAA domain Mg_chelatase PF01078.16 gi|452206535|ref|YP_007486657.1| - 0.002 17.2 0.1 0.0051 15.9 0.0 1.6 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI Creatininase PF02633.9 gi|452206535|ref|YP_007486657.1| - 0.0031 16.6 0.0 0.0056 15.7 0.0 1.3 1 0 0 1 1 1 1 Creatinine amidohydrolase AAA_3 PF07726.6 gi|452206535|ref|YP_007486657.1| - 0.0035 16.9 1.6 0.014 14.9 0.0 2.7 2 2 1 3 3 3 1 ATPase family associated with various cellular activities (AAA) AAA_11 PF13086.1 gi|452206535|ref|YP_007486657.1| - 0.0035 16.9 1.5 0.12 11.9 0.0 2.3 2 0 0 2 2 2 1 AAA domain Zeta_toxin PF06414.7 gi|452206535|ref|YP_007486657.1| - 0.0041 16.2 0.7 0.023 13.7 0.0 2.3 2 0 0 2 2 2 1 Zeta toxin DUF815 PF05673.8 gi|452206535|ref|YP_007486657.1| - 0.0056 15.6 0.0 0.013 14.4 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF815) CPT PF07931.7 gi|452206535|ref|YP_007486657.1| - 0.0066 16.0 0.2 0.018 14.6 0.0 1.9 2 0 0 2 2 2 1 Chloramphenicol phosphotransferase-like protein GrpE PF01025.14 gi|452206535|ref|YP_007486657.1| - 0.007 15.9 10.2 0.0072 15.8 5.2 2.2 2 0 0 2 2 2 1 GrpE AAA_28 PF13521.1 gi|452206535|ref|YP_007486657.1| - 0.0074 16.2 2.0 0.01 15.7 0.0 2.4 2 2 0 2 2 2 1 AAA domain Sigma54_activat PF00158.21 gi|452206535|ref|YP_007486657.1| - 0.0077 15.7 0.1 0.034 13.6 0.1 2.2 1 1 0 1 1 1 1 Sigma-54 interaction domain Sigma54_activ_2 PF14532.1 gi|452206535|ref|YP_007486657.1| - 0.0084 16.1 0.0 0.03 14.3 0.0 1.9 1 0 0 1 1 1 1 Sigma-54 interaction domain RNA_helicase PF00910.17 gi|452206535|ref|YP_007486657.1| - 0.015 15.4 0.0 0.036 14.2 0.0 1.7 1 0 0 1 1 1 0 RNA helicase AAA_25 PF13481.1 gi|452206535|ref|YP_007486657.1| - 0.016 14.5 7.0 0.15 11.4 0.1 3.1 2 1 1 3 3 3 0 AAA domain Torsin PF06309.6 gi|452206535|ref|YP_007486657.1| - 0.016 15.0 0.1 0.047 13.5 0.0 1.7 2 0 0 2 2 1 0 Torsin NB-ARC PF00931.17 gi|452206535|ref|YP_007486657.1| - 0.02 13.7 0.0 0.061 12.1 0.0 1.8 1 0 0 1 1 1 0 NB-ARC domain KaiC PF06745.8 gi|452206535|ref|YP_007486657.1| - 0.021 13.9 5.6 0.41 9.7 0.0 3.5 2 1 0 3 3 3 0 KaiC AAA_23 PF13476.1 gi|452206535|ref|YP_007486657.1| - 0.041 14.1 8.6 8.5 6.6 0.0 2.6 2 0 0 2 2 2 0 AAA domain ABC_tran PF00005.22 gi|452206535|ref|YP_007486657.1| - 0.049 13.9 4.3 0.24 11.6 0.0 2.8 3 1 0 3 3 2 0 ABC transporter UPF0079 PF02367.12 gi|452206535|ref|YP_007486657.1| - 0.06 12.9 0.0 0.13 11.8 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 ResIII PF04851.10 gi|452206535|ref|YP_007486657.1| - 0.09 12.6 3.4 1.4 8.7 0.0 2.4 1 1 1 2 2 2 0 Type III restriction enzyme, res subunit ATG16 PF08614.6 gi|452206535|ref|YP_007486657.1| - 0.11 12.3 15.5 0.075 12.8 7.6 2.4 2 0 0 2 2 2 0 Autophagy protein 16 (ATG16) bZIP_1 PF00170.16 gi|452206535|ref|YP_007486657.1| - 0.11 12.4 13.7 0.87 9.5 4.2 2.6 1 1 1 2 2 2 0 bZIP transcription factor NTPase_1 PF03266.10 gi|452206535|ref|YP_007486657.1| - 0.12 12.1 2.5 0.61 9.7 0.0 2.9 2 2 1 3 3 3 0 NTPase APG6 PF04111.7 gi|452206535|ref|YP_007486657.1| - 0.17 10.9 7.2 0.29 10.1 5.0 1.4 1 0 0 1 1 1 0 Autophagy protein Apg6 AAA_24 PF13479.1 gi|452206535|ref|YP_007486657.1| - 0.19 11.2 2.0 0.31 10.5 0.1 2.3 2 1 0 2 2 2 0 AAA domain Fmp27_WPPW PF10359.4 gi|452206535|ref|YP_007486657.1| - 0.21 9.9 7.3 0.33 9.3 5.0 1.2 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain Viral_P18 PF04521.8 gi|452206535|ref|YP_007486657.1| - 0.38 10.2 2.9 0.89 9.0 2.0 1.6 1 0 0 1 1 1 0 ssRNA positive strand viral 18kD cysteine rich protein vATP-synt_E PF01991.13 gi|452206535|ref|YP_007486657.1| - 0.6 9.3 8.8 3.1 7.0 6.1 2.1 1 1 0 1 1 1 0 ATP synthase (E/31 kDa) subunit DUF4349 PF14257.1 gi|452206535|ref|YP_007486657.1| - 0.84 8.8 9.2 6.3 5.9 2.8 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4349) ADIP PF11559.3 gi|452206535|ref|YP_007486657.1| - 1.2 9.0 12.7 0.16 11.8 5.9 1.6 2 0 0 2 2 1 0 Afadin- and alpha -actinin-Binding DUF342 PF03961.8 gi|452206535|ref|YP_007486657.1| - 1.5 7.1 7.0 2.4 6.4 4.9 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF342) IncA PF04156.9 gi|452206535|ref|YP_007486657.1| - 2.2 7.8 15.0 4 6.9 9.9 1.8 1 1 0 1 1 1 0 IncA protein Bactofilin PF04519.8 gi|452206538|ref|YP_007486660.1| - 1.4e-10 41.1 5.5 1.8e-07 31.0 0.2 3.1 2 1 1 3 3 3 2 Polymer-forming cytoskeletal Hexapep PF00132.19 gi|452206538|ref|YP_007486660.1| - 5.3e-06 25.6 4.9 0.21 11.1 0.0 5.1 5 0 0 5 5 5 2 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|452206538|ref|YP_007486660.1| - 3 7.4 14.1 0.25 10.9 0.1 4.3 4 1 0 4 4 4 0 Hexapeptide repeat of succinyl-transferase Neisseria_TspB PF05616.8 gi|452206538|ref|YP_007486660.1| - 3.9 5.7 8.4 5.2 5.3 5.8 1.1 1 0 0 1 1 1 0 Neisseria meningitidis TspB protein MMR_HSR1_C PF08438.5 gi|452206539|ref|YP_007486661.1| - 5.8e-30 103.7 0.0 9.7e-30 103.0 0.0 1.4 1 0 0 1 1 1 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.18 gi|452206539|ref|YP_007486661.1| - 5.4e-18 65.0 0.0 3.8e-17 62.3 0.0 2.1 1 1 0 1 1 1 1 50S ribosome-binding GTPase TGS PF02824.16 gi|452206539|ref|YP_007486661.1| - 4.8e-11 42.3 0.0 1e-10 41.2 0.0 1.6 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.13 gi|452206539|ref|YP_007486661.1| - 1.4e-09 37.3 0.0 2.7e-08 33.2 0.0 2.4 3 0 0 3 3 3 1 Ferrous iron transport protein B GTP_EFTU PF00009.22 gi|452206539|ref|YP_007486661.1| - 0.0065 15.9 0.0 0.23 10.8 0.0 2.8 3 0 0 3 3 3 1 Elongation factor Tu GTP binding domain Miro PF08477.8 gi|452206539|ref|YP_007486661.1| - 0.14 12.6 0.0 5.8 7.4 0.0 2.5 2 1 0 2 2 2 0 Miro-like protein Mrr_cat PF04471.7 gi|452206541|ref|YP_007486663.1| - 2.4e-26 91.7 0.0 4e-26 91.0 0.0 1.4 1 0 0 1 1 1 1 Restriction endonuclease zf-ribbon_3 PF13248.1 gi|452206541|ref|YP_007486663.1| - 0.0062 15.7 3.5 0.014 14.5 2.4 1.6 1 0 0 1 1 1 1 zinc-ribbon domain Siva PF05458.7 gi|452206541|ref|YP_007486663.1| - 0.2 11.2 1.3 0.31 10.6 0.9 1.2 1 0 0 1 1 1 0 Cd27 binding protein (Siva) DZR PF12773.2 gi|452206541|ref|YP_007486663.1| - 0.36 10.6 7.5 0.036 13.8 1.5 1.8 1 1 1 2 2 2 0 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|452206541|ref|YP_007486663.1| - 1.9 8.0 6.3 0.58 9.7 2.1 1.8 2 0 0 2 2 2 0 zinc-ribbon domain Polysacc_synt_3 PF13440.1 gi|452206542|ref|YP_007486664.1| - 3.9e-09 36.3 17.1 3.9e-09 36.3 11.9 3.5 2 2 1 3 3 3 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.1 gi|452206542|ref|YP_007486664.1| - 7.7e-07 29.0 16.4 7.7e-07 29.0 11.4 4.3 3 1 1 4 4 4 1 Polysaccharide biosynthesis C-terminal domain Nol1_Nop2_Fmu_2 PF13636.1 gi|452206543|ref|YP_007486665.1| - 4.2e-17 62.0 0.0 5.4e-17 61.7 0.0 1.2 1 0 0 1 1 1 1 pre-rRNA processing and ribosome biogenesis Nol1_Nop2_Fmu PF01189.12 gi|452206544|ref|YP_007486666.1| - 8.9e-48 163.0 0.0 1.1e-47 162.7 0.0 1.0 1 0 0 1 1 1 1 NOL1/NOP2/sun family Methyltransf_31 PF13847.1 gi|452206544|ref|YP_007486666.1| - 1.8e-07 30.9 0.0 2.4e-07 30.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|452206544|ref|YP_007486666.1| - 3.4e-07 30.2 0.1 5.4e-07 29.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|452206544|ref|YP_007486666.1| - 4.2e-05 24.1 0.0 6.8e-05 23.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain FtsJ PF01728.14 gi|452206544|ref|YP_007486666.1| - 0.0026 17.7 0.0 0.0043 17.0 0.0 1.3 1 0 0 1 1 1 1 FtsJ-like methyltransferase Cons_hypoth95 PF03602.10 gi|452206544|ref|YP_007486666.1| - 0.02 14.2 0.1 0.042 13.2 0.0 1.5 2 0 0 2 2 2 0 Conserved hypothetical protein 95 PAC2 PF09754.4 gi|452206545|ref|YP_007486667.1| - 2.1e-40 138.9 0.0 2.4e-40 138.7 0.0 1.0 1 0 0 1 1 1 1 PAC2 family NYN PF01936.13 gi|452206546|ref|YP_007486668.1| - 8e-34 117.0 0.0 9.4e-34 116.7 0.0 1.0 1 0 0 1 1 1 1 NYN domain Clathrin PF00637.15 gi|452206546|ref|YP_007486668.1| - 0.097 12.2 0.0 0.16 11.5 0.0 1.3 1 0 0 1 1 1 0 Region in Clathrin and VPS FMO-like PF00743.14 gi|452206546|ref|YP_007486668.1| - 0.12 10.5 0.0 0.15 10.1 0.0 1.1 1 0 0 1 1 1 0 Flavin-binding monooxygenase-like Peptidase_M20 PF01546.23 gi|452206547|ref|YP_007486669.1| - 1.2e-20 73.8 11.3 3.4e-20 72.3 7.8 1.7 1 1 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|452206547|ref|YP_007486669.1| - 5.7e-13 48.5 0.2 1.2e-12 47.5 0.2 1.5 1 0 0 1 1 1 1 Peptidase dimerisation domain Ribosomal_S10 PF00338.17 gi|452206548|ref|YP_007486670.1| - 1.9e-09 37.2 0.0 2.1e-09 37.0 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e NUDIX PF00293.23 gi|452206549|ref|YP_007486671.1| - 6.6e-18 64.6 0.2 9.8e-18 64.1 0.1 1.2 1 0 0 1 1 1 1 NUDIX domain Fe-S_biosyn PF01521.15 gi|452206550|ref|YP_007486672.1| - 5.3e-18 64.9 0.0 6.2e-18 64.7 0.0 1.0 1 0 0 1 1 1 1 Iron-sulphur cluster biosynthesis ABC_tran PF00005.22 gi|452206551|ref|YP_007486673.1| - 4.8e-31 107.8 0.0 7.5e-31 107.2 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|452206551|ref|YP_007486673.1| - 1.6e-16 61.1 0.1 3.7e-10 40.2 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_10 PF12846.2 gi|452206551|ref|YP_007486673.1| - 0.00017 21.1 0.0 0.00031 20.2 0.0 1.3 1 0 0 1 1 1 1 AAA-like domain DUF4162 PF13732.1 gi|452206551|ref|YP_007486673.1| - 0.0025 18.2 0.0 0.0071 16.8 0.0 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF4162) AAA_30 PF13604.1 gi|452206551|ref|YP_007486673.1| - 0.004 16.7 0.0 0.056 13.0 0.0 2.4 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|452206551|ref|YP_007486673.1| - 0.0046 17.3 0.1 0.0092 16.3 0.0 1.5 2 0 0 2 2 2 1 AAA domain IstB_IS21 PF01695.12 gi|452206551|ref|YP_007486673.1| - 0.016 14.6 0.8 0.38 10.1 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein DUF258 PF03193.11 gi|452206551|ref|YP_007486673.1| - 0.022 13.9 0.0 0.12 11.5 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function, DUF258 AAA_15 PF13175.1 gi|452206551|ref|YP_007486673.1| - 0.024 13.7 0.0 0.56 9.1 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain AAA_29 PF13555.1 gi|452206551|ref|YP_007486673.1| - 0.028 13.9 0.1 0.063 12.8 0.1 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_25 PF13481.1 gi|452206551|ref|YP_007486673.1| - 0.041 13.2 0.1 0.085 12.2 0.1 1.8 1 1 0 1 1 1 0 AAA domain SMC_N PF02463.14 gi|452206551|ref|YP_007486673.1| - 0.045 12.9 0.0 2.1 7.5 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|452206551|ref|YP_007486673.1| - 0.053 13.5 0.1 0.23 11.4 0.1 2.0 1 1 0 1 1 1 0 AAA ATPase domain NTPase_1 PF03266.10 gi|452206551|ref|YP_007486673.1| - 0.11 12.2 0.3 2.8 7.6 0.0 2.8 3 0 0 3 3 3 0 NTPase ABC2_membrane PF01061.19 gi|452206552|ref|YP_007486674.1| - 1.4e-27 96.2 10.7 1.8e-27 95.9 7.4 1.0 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|452206552|ref|YP_007486674.1| - 0.00049 19.2 14.0 0.00049 19.2 9.7 1.7 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|452206552|ref|YP_007486674.1| - 0.0066 15.7 4.3 0.012 14.9 3.0 1.4 1 0 0 1 1 1 1 ABC-2 family transporter protein TcpE PF12648.2 gi|452206552|ref|YP_007486674.1| - 3.1 7.9 8.3 9 6.5 0.8 2.7 1 1 0 2 2 2 0 TcpE family DDE_Tnp_IS240 PF13610.1 gi|452206553|ref|YP_007486675.1| - 2.7e-16 59.8 0.2 3.5e-16 59.4 0.1 1.2 1 0 0 1 1 1 1 DDE domain DDE_Tnp_IS66 PF03050.9 gi|452206553|ref|YP_007486675.1| - 0.00021 20.6 0.2 0.00053 19.2 0.1 1.7 1 1 0 1 1 1 1 Transposase IS66 family DDE_3 PF13358.1 gi|452206553|ref|YP_007486675.1| - 0.0029 17.3 0.0 0.011 15.4 0.0 1.8 1 1 0 1 1 1 1 DDE superfamily endonuclease rve PF00665.21 gi|452206553|ref|YP_007486675.1| - 0.006 16.6 0.4 0.012 15.7 0.2 1.5 1 0 0 1 1 1 1 Integrase core domain DDE_Tnp_1 PF01609.16 gi|452206553|ref|YP_007486675.1| - 0.18 11.3 2.8 6.5 6.2 1.9 2.2 1 1 0 1 1 1 0 Transposase DDE domain DDE_Tnp_1 PF01609.16 gi|452206554|ref|YP_007486676.1| - 4.6e-19 68.8 0.0 6.3e-19 68.3 0.0 1.1 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_6 PF13751.1 gi|452206554|ref|YP_007486676.1| - 0.061 13.3 0.1 0.12 12.3 0.0 1.4 1 0 0 1 1 1 0 Transposase DDE domain Aldedh PF00171.17 gi|452206556|ref|YP_007486678.1| - 8.9e-174 578.1 0.0 1e-173 577.9 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family SNF2_N PF00176.18 gi|452206558|ref|YP_007486680.1| - 1.5e-19 69.8 0.0 3e-19 68.9 0.0 1.4 1 0 0 1 1 1 1 SNF2 family N-terminal domain Helicase_C PF00271.26 gi|452206558|ref|YP_007486680.1| - 4.7e-13 48.7 0.0 1.1e-12 47.6 0.0 1.6 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|452206558|ref|YP_007486680.1| - 2.4e-06 27.4 0.0 1.2e-05 25.2 0.0 2.0 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit PLDc_2 PF13091.1 gi|452206558|ref|YP_007486680.1| - 0.00027 20.6 0.0 0.00074 19.2 0.0 1.7 1 0 0 1 1 1 1 PLD-like domain CagA PF03507.8 gi|452206558|ref|YP_007486680.1| - 0.018 14.8 0.1 0.038 13.8 0.1 1.4 1 0 0 1 1 1 0 CagA exotoxin TelA PF05816.6 gi|452206558|ref|YP_007486680.1| - 0.036 12.7 0.1 0.099 11.3 0.0 1.7 1 0 0 1 1 1 0 Toxic anion resistance protein (TelA) DUF1664 PF07889.7 gi|452206558|ref|YP_007486680.1| - 0.073 12.8 1.7 0.26 11.0 0.1 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) DEAD PF00270.24 gi|452206558|ref|YP_007486680.1| - 0.11 11.9 0.0 6.5 6.2 0.0 2.5 2 0 0 2 2 2 0 DEAD/DEAH box helicase DivIC PF04977.10 gi|452206558|ref|YP_007486680.1| - 0.2 11.1 3.0 3.2 7.3 0.0 3.0 2 0 0 2 2 2 0 Septum formation initiator Fib_alpha PF08702.5 gi|452206558|ref|YP_007486680.1| - 0.24 11.5 3.4 8.5 6.4 0.1 3.0 2 1 0 3 3 3 0 Fibrinogen alpha/beta chain family DDE_Tnp_IS66 PF03050.9 gi|452206559|ref|YP_007486681.1| - 5.4e-54 183.2 0.2 9.5e-54 182.4 0.1 1.4 1 0 0 1 1 1 1 Transposase IS66 family zf-IS66 PF13005.2 gi|452206559|ref|YP_007486681.1| - 0.0003 20.7 7.3 0.0009 19.1 5.1 1.9 1 0 0 1 1 1 1 zinc-finger binding domain of transposase IS66 Transposase_mut PF00872.13 gi|452206559|ref|YP_007486681.1| - 0.018 13.6 0.0 0.034 12.6 0.0 1.4 1 0 0 1 1 1 0 Transposase, Mutator family DDE_Tnp_IS240 PF13610.1 gi|452206559|ref|YP_007486681.1| - 0.1 12.5 0.2 0.32 10.9 0.1 1.9 1 1 0 1 1 1 0 DDE domain DivIC PF04977.10 gi|452206559|ref|YP_007486681.1| - 0.12 11.9 0.1 0.12 11.9 0.1 2.2 3 0 0 3 3 3 0 Septum formation initiator DUF972 PF06156.8 gi|452206559|ref|YP_007486681.1| - 0.12 12.7 3.2 0.11 12.8 0.8 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF972) NYD-SP28_assoc PF14775.1 gi|452206559|ref|YP_007486681.1| - 0.14 11.8 2.3 0.45 10.2 1.6 1.9 1 0 0 1 1 1 0 Sperm tail C-terminal domain HALZ PF02183.13 gi|452206559|ref|YP_007486681.1| - 1.2 8.9 6.1 1.8 8.3 2.6 2.3 2 0 0 2 2 2 0 Homeobox associated leucine zipper DUF499 PF04465.7 gi|452206561|ref|YP_007486683.1| - 8.7e-29 99.7 0.0 3.1e-22 78.0 0.0 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF499) zf-C2H2_6 PF13912.1 gi|452206561|ref|YP_007486683.1| - 8.1e-06 25.5 2.3 0.064 13.1 0.1 2.8 2 0 0 2 2 2 2 C2H2-type zinc finger zf-C2H2 PF00096.21 gi|452206561|ref|YP_007486683.1| - 0.002 18.3 0.9 2.2 8.7 0.1 2.7 2 0 0 2 2 2 2 Zinc finger, C2H2 type FYVE PF01363.16 gi|452206561|ref|YP_007486683.1| - 0.027 14.3 0.3 0.05 13.4 0.2 1.3 1 0 0 1 1 1 0 FYVE zinc finger zf-met PF12874.2 gi|452206561|ref|YP_007486683.1| - 0.035 14.3 6.3 1.7 8.9 0.3 3.1 3 0 0 3 3 3 0 Zinc-finger of C2H2 type zf-C2H2_2 PF12756.2 gi|452206561|ref|YP_007486683.1| - 0.097 12.7 2.1 10 6.2 0.2 2.9 1 1 1 2 2 2 0 C2H2 type zinc-finger (2 copies) zf-C2H2_4 PF13894.1 gi|452206561|ref|YP_007486683.1| - 0.21 11.9 0.5 18 5.9 0.0 2.7 2 0 0 2 2 2 0 C2H2-type zinc finger zf-LYAR PF08790.6 gi|452206561|ref|YP_007486683.1| - 0.31 10.7 12.4 2.3 8.0 1.9 2.9 2 0 0 2 2 2 0 LYAR-type C2HC zinc finger zf-C2H2_jaz PF12171.3 gi|452206561|ref|YP_007486683.1| - 3.2 8.0 9.6 0.69 10.1 0.4 2.9 3 0 0 3 3 3 0 Zinc-finger double-stranded RNA-binding Phage_integrase PF00589.17 gi|452206562|ref|YP_007486684.1| - 2.1e-09 37.3 0.2 4.1e-09 36.3 0.1 1.5 1 0 0 1 1 1 1 Phage integrase family GerPC PF10737.4 gi|452206564|ref|YP_007486686.1| - 0.012 15.4 1.2 0.033 13.9 0.7 1.8 2 0 0 2 2 2 0 Spore germination protein GerPC DUF4514 PF14986.1 gi|452206565|ref|YP_007486687.1| - 0.048 13.4 0.5 7.4 6.4 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4514) Creatininase PF02633.9 gi|452206566|ref|YP_007486688.1| - 2.7e-14 52.8 0.1 3e-14 52.6 0.1 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase DUF3040 PF11239.3 gi|452206567|ref|YP_007486689.1| - 0.021 14.8 0.1 0.024 14.6 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3040) SPW PF03779.9 gi|452206567|ref|YP_007486689.1| - 0.039 13.3 0.6 0.039 13.3 0.4 1.7 1 1 1 2 2 2 0 SPW repeat DUF2371 PF10177.4 gi|452206567|ref|YP_007486689.1| - 0.13 12.1 0.0 0.15 11.9 0.0 1.1 1 0 0 1 1 1 0 Uncharacterised conserved protein (DUF2371) DUF454 PF04304.8 gi|452206568|ref|YP_007486690.1| - 0.65 10.0 2.8 0.67 10.0 0.1 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF454) SCFA_trans PF02667.9 gi|452206570|ref|YP_007486692.1| - 8e-114 380.8 16.7 1.7e-113 379.7 11.5 1.5 1 1 0 1 1 1 1 Short chain fatty acid transporter ABG_transport PF03806.8 gi|452206570|ref|YP_007486692.1| - 5.5e-08 31.2 6.1 1.4e-07 29.9 4.3 1.7 1 0 0 1 1 1 1 AbgT putative transporter family DcuC PF03606.10 gi|452206570|ref|YP_007486692.1| - 0.0011 17.3 7.7 0.0011 17.3 5.3 1.9 2 0 0 2 2 2 1 C4-dicarboxylate anaerobic carrier MARVEL PF01284.18 gi|452206572|ref|YP_007486694.1| - 1.3 8.8 4.2 0.3 10.9 0.4 1.6 2 0 0 2 2 2 0 Membrane-associating domain OrfB_Zn_ribbon PF07282.6 gi|452206574|ref|YP_007486696.1| - 8.5e-22 76.5 0.4 1.6e-21 75.7 0.2 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|452206574|ref|YP_007486696.1| - 0.0012 18.2 0.0 0.0025 17.2 0.0 1.4 1 0 0 1 1 1 1 Probable transposase Lipase_GDSL_2 PF13472.1 gi|452206574|ref|YP_007486696.1| - 0.076 13.1 0.2 0.31 11.1 0.0 2.0 2 0 0 2 2 2 0 GDSL-like Lipase/Acylhydrolase family AsnC_trans_reg PF01037.16 gi|452206575|ref|YP_007486697.1| - 1.3e-11 43.9 0.1 2.2e-11 43.2 0.1 1.4 1 0 0 1 1 1 1 AsnC family HTH_24 PF13412.1 gi|452206575|ref|YP_007486697.1| - 3.3e-11 42.3 0.1 6.5e-11 41.4 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|452206575|ref|YP_007486697.1| - 1.3e-08 34.2 0.1 2.2e-08 33.5 0.0 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.7 gi|452206575|ref|YP_007486697.1| - 2.1e-05 24.0 0.0 4.4e-05 23.0 0.0 1.6 1 0 0 1 1 1 1 HTH domain HTH_5 PF01022.15 gi|452206575|ref|YP_007486697.1| - 2.5e-05 23.8 0.0 4.3e-05 23.0 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|452206575|ref|YP_007486697.1| - 4.6e-05 23.1 0.0 9.4e-05 22.1 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.17 gi|452206575|ref|YP_007486697.1| - 0.0017 18.0 0.0 0.012 15.2 0.0 2.4 3 1 1 4 4 4 1 MarR family HTH_DeoR PF08220.7 gi|452206575|ref|YP_007486697.1| - 0.0019 17.6 0.1 0.0048 16.3 0.0 1.7 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain TrmB PF01978.14 gi|452206575|ref|YP_007486697.1| - 0.0042 16.7 0.0 0.0074 15.9 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_28 PF13518.1 gi|452206575|ref|YP_007486697.1| - 0.0043 17.0 0.0 0.0081 16.1 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.1 gi|452206575|ref|YP_007486697.1| - 0.013 15.8 0.1 0.17 12.2 0.0 2.3 2 1 1 3 3 3 0 Winged helix DNA-binding domain GntR PF00392.16 gi|452206575|ref|YP_007486697.1| - 0.027 13.8 0.0 0.056 12.8 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family Fe_dep_repress PF01325.14 gi|452206575|ref|YP_007486697.1| - 0.049 13.5 0.0 0.13 12.2 0.0 1.7 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain MarR_2 PF12802.2 gi|452206575|ref|YP_007486697.1| - 0.061 12.9 0.0 0.3 10.8 0.0 1.9 2 0 0 2 2 2 0 MarR family HTH_34 PF13601.1 gi|452206575|ref|YP_007486697.1| - 0.11 12.5 0.0 0.28 11.2 0.0 1.6 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_23 PF13384.1 gi|452206575|ref|YP_007486697.1| - 0.13 12.0 0.0 0.24 11.1 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain GvpO PF05800.6 gi|452206576|ref|YP_007486698.1| - 1.7e-34 117.7 0.0 2.1e-34 117.4 0.0 1.1 1 0 0 1 1 1 1 Gas vesicle synthesis protein GvpO AAA_5 PF07728.9 gi|452206577|ref|YP_007486699.1| - 6e-19 68.1 0.0 1.2e-17 63.9 0.0 2.3 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.24 gi|452206577|ref|YP_007486699.1| - 7.8e-06 26.1 0.6 6.4e-05 23.1 0.0 2.6 4 0 0 4 4 2 1 ATPase family associated with various cellular activities (AAA) IstB_IS21 PF01695.12 gi|452206577|ref|YP_007486699.1| - 3.3e-05 23.3 0.0 6.8e-05 22.3 0.0 1.6 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_3 PF07726.6 gi|452206577|ref|YP_007486699.1| - 9.2e-05 22.0 0.0 0.0058 16.2 0.0 2.4 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|452206577|ref|YP_007486699.1| - 0.00026 21.1 0.0 0.00065 19.8 0.0 1.7 1 0 0 1 1 1 1 AAA domain Sigma54_activ_2 PF14532.1 gi|452206577|ref|YP_007486699.1| - 0.00053 20.0 0.0 0.0014 18.7 0.0 1.9 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA_17 PF13207.1 gi|452206577|ref|YP_007486699.1| - 0.0021 18.8 1.3 0.095 13.5 0.0 2.8 3 1 0 3 3 2 1 AAA domain Sigma54_activat PF00158.21 gi|452206577|ref|YP_007486699.1| - 0.0026 17.2 0.0 0.027 13.9 0.0 2.2 2 0 0 2 2 2 1 Sigma-54 interaction domain Arch_ATPase PF01637.13 gi|452206577|ref|YP_007486699.1| - 0.0027 17.4 0.0 0.0052 16.5 0.0 1.7 1 1 0 1 1 1 1 Archaeal ATPase AAA_14 PF13173.1 gi|452206577|ref|YP_007486699.1| - 0.0052 16.6 0.0 0.014 15.3 0.0 1.7 1 0 0 1 1 1 1 AAA domain RuvB_N PF05496.7 gi|452206577|ref|YP_007486699.1| - 0.0052 15.8 0.0 0.098 11.6 0.0 2.2 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus TIP49 PF06068.8 gi|452206577|ref|YP_007486699.1| - 0.0085 14.8 0.0 0.12 11.1 0.0 2.1 2 0 0 2 2 2 1 TIP49 C-terminus AAA_16 PF13191.1 gi|452206577|ref|YP_007486699.1| - 0.0098 15.8 0.0 0.041 13.8 0.0 2.0 1 1 1 2 2 2 1 AAA ATPase domain NACHT PF05729.7 gi|452206577|ref|YP_007486699.1| - 0.01 15.5 0.0 0.031 13.9 0.0 1.8 1 0 0 1 1 1 0 NACHT domain CbbQ_C PF08406.5 gi|452206577|ref|YP_007486699.1| - 0.011 15.7 0.9 0.018 15.0 0.7 1.4 1 0 0 1 1 1 0 CbbQ/NirQ/NorQ C-terminal ABC_tran PF00005.22 gi|452206577|ref|YP_007486699.1| - 0.012 15.9 0.5 0.029 14.6 0.0 2.1 1 1 1 2 2 2 0 ABC transporter AAA_33 PF13671.1 gi|452206577|ref|YP_007486699.1| - 0.013 15.4 2.1 0.031 14.1 0.0 2.3 2 0 0 2 2 2 0 AAA domain ResIII PF04851.10 gi|452206577|ref|YP_007486699.1| - 0.013 15.3 0.2 0.072 12.9 0.0 1.8 1 1 1 2 2 2 0 Type III restriction enzyme, res subunit IPT PF01745.11 gi|452206577|ref|YP_007486699.1| - 0.014 14.5 0.0 0.027 13.6 0.0 1.4 1 0 0 1 1 1 0 Isopentenyl transferase PhoH PF02562.11 gi|452206577|ref|YP_007486699.1| - 0.019 14.2 0.0 0.046 12.9 0.0 1.6 1 0 0 1 1 1 0 PhoH-like protein AAA_25 PF13481.1 gi|452206577|ref|YP_007486699.1| - 0.069 12.5 0.0 0.24 10.7 0.0 2.0 2 0 0 2 2 2 0 AAA domain DUF258 PF03193.11 gi|452206577|ref|YP_007486699.1| - 0.084 12.0 0.0 0.19 10.8 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_18 PF13238.1 gi|452206577|ref|YP_007486699.1| - 0.15 12.4 0.0 0.15 12.4 0.0 2.1 3 0 0 3 3 2 0 AAA domain Halo_GVPC PF05465.8 gi|452206578|ref|YP_007486700.1| - 1.3e-32 111.0 68.5 3.5e-07 29.9 4.0 7.7 8 0 0 8 8 7 7 Halobacterial gas vesicle protein C (GVPC) repeat ROS_MUCR PF05443.6 gi|452206578|ref|YP_007486700.1| - 7.9e-07 28.9 0.0 4.9e-06 26.3 0.0 2.3 2 0 0 2 2 2 1 ROS/MUCR transcriptional regulator protein Bacillus_HBL PF05791.6 gi|452206578|ref|YP_007486700.1| - 0.0017 17.7 10.7 0.32 10.3 0.4 3.6 2 1 2 4 4 4 2 Bacillus haemolytic enterotoxin (HBL) TPR_MLP1_2 PF07926.7 gi|452206578|ref|YP_007486700.1| - 0.0018 18.0 4.0 0.013 15.2 0.1 3.4 1 1 3 4 4 4 1 TPR/MLP1/MLP2-like protein Spectrin PF00435.16 gi|452206578|ref|YP_007486700.1| - 0.0027 17.9 4.3 2.6 8.3 0.2 4.0 1 1 3 4 4 4 1 Spectrin repeat AAA_13 PF13166.1 gi|452206578|ref|YP_007486700.1| - 0.0096 14.4 8.7 0.029 12.8 2.0 2.0 1 1 1 2 2 2 1 AAA domain Seryl_tRNA_N PF02403.17 gi|452206578|ref|YP_007486700.1| - 0.0097 15.9 3.9 11 6.1 0.0 4.0 1 1 3 4 4 4 0 Seryl-tRNA synthetase N-terminal domain Cor1 PF04803.7 gi|452206578|ref|YP_007486700.1| - 0.017 14.8 1.4 0.058 13.1 0.1 2.3 2 0 0 2 2 2 0 Cor1/Xlr/Xmr conserved region DUF3322 PF11795.3 gi|452206578|ref|YP_007486700.1| - 0.12 11.9 0.7 2.6 7.6 0.0 2.4 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria N-term (DUF3322) FbpA PF05833.6 gi|452206578|ref|YP_007486700.1| - 0.12 10.8 3.2 0.11 10.9 1.2 1.6 1 1 0 1 1 1 0 Fibronectin-binding protein A N-terminus (FbpA) Rootletin PF15035.1 gi|452206578|ref|YP_007486700.1| - 0.2 11.6 2.0 9 6.2 0.1 3.0 2 1 0 2 2 2 0 Ciliary rootlet component, centrosome cohesion DUF3560 PF12083.3 gi|452206578|ref|YP_007486700.1| - 0.23 11.5 1.8 14 5.7 0.3 2.7 2 0 0 2 2 2 0 Domain of unknown function (DUF3560) MutS_III PF05192.13 gi|452206578|ref|YP_007486700.1| - 0.35 10.6 3.5 0.66 9.7 2.4 1.6 1 1 0 1 1 1 0 MutS domain III Tape_meas_lam_C PF09718.5 gi|452206578|ref|YP_007486700.1| - 0.35 10.7 8.1 1.5 8.7 1.1 3.2 1 1 2 3 3 3 0 Lambda phage tail tape-measure protein (Tape_meas_lam_C) DUF1515 PF07439.6 gi|452206578|ref|YP_007486700.1| - 0.38 10.5 1.6 54 3.6 0.0 3.6 1 1 4 5 5 5 0 Protein of unknown function (DUF1515) IncA PF04156.9 gi|452206578|ref|YP_007486700.1| - 0.45 10.0 5.8 7.7 6.0 1.3 3.2 1 1 1 2 2 2 0 IncA protein DUF1033 PF06279.6 gi|452206578|ref|YP_007486700.1| - 0.82 9.4 6.5 2.1 8.1 0.1 3.5 2 2 2 4 4 4 0 Protein of unknown function (DUF1033) Rotamase PF00639.16 gi|452206578|ref|YP_007486700.1| - 1.1 10.0 12.1 16 6.3 0.1 4.1 2 1 1 4 4 4 0 PPIC-type PPIASE domain Gas_vesicle PF00741.13 gi|452206579|ref|YP_007486701.1| - 6.6e-17 61.0 7.1 8.5e-17 60.7 4.9 1.2 1 0 0 1 1 1 1 Gas vesicle protein GvpD PF07088.6 gi|452206580|ref|YP_007486702.1| - 1.3e-194 647.0 0.1 1.5e-194 646.8 0.0 1.0 1 0 0 1 1 1 1 GvpD gas vesicle protein KaiC PF06745.8 gi|452206580|ref|YP_007486702.1| - 4.1e-14 52.2 0.0 5.4e-12 45.3 0.0 2.2 2 0 0 2 2 2 2 KaiC AAA_25 PF13481.1 gi|452206580|ref|YP_007486702.1| - 3.1e-05 23.4 0.0 0.0002 20.8 0.0 2.1 2 0 0 2 2 2 1 AAA domain DUF2075 PF09848.4 gi|452206580|ref|YP_007486702.1| - 0.0087 15.0 0.0 0.014 14.3 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) FtsK_SpoIIIE PF01580.13 gi|452206580|ref|YP_007486702.1| - 0.021 14.2 0.0 2.1 7.7 0.0 2.2 2 0 0 2 2 2 0 FtsK/SpoIIIE family AAA_16 PF13191.1 gi|452206580|ref|YP_007486702.1| - 0.023 14.6 0.0 0.068 13.1 0.0 1.8 1 1 0 1 1 1 0 AAA ATPase domain ResIII PF04851.10 gi|452206580|ref|YP_007486702.1| - 0.023 14.5 0.5 0.038 13.8 0.0 1.5 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit IstB_IS21 PF01695.12 gi|452206580|ref|YP_007486702.1| - 0.032 13.6 0.0 0.14 11.5 0.0 2.0 1 1 1 2 2 2 0 IstB-like ATP binding protein AAA_19 PF13245.1 gi|452206580|ref|YP_007486702.1| - 0.033 13.9 0.5 0.096 12.4 0.0 1.9 2 0 0 2 2 2 0 Part of AAA domain T2SM PF04612.7 gi|452206580|ref|YP_007486702.1| - 0.11 12.2 0.0 2.7 7.7 0.0 2.2 2 0 0 2 2 2 0 Type II secretion system (T2SS), protein M DDE_3 PF13358.1 gi|452206581|ref|YP_007486703.1| - 2.6e-22 79.1 0.0 4.7e-22 78.3 0.0 1.4 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_33 PF13592.1 gi|452206581|ref|YP_007486703.1| - 4.9e-17 61.2 1.4 4.8e-16 58.0 0.1 3.1 4 0 0 4 4 4 1 Winged helix-turn helix HTH_29 PF13551.1 gi|452206581|ref|YP_007486703.1| - 1.3e-15 57.4 0.0 3.3e-15 56.1 0.0 1.7 2 0 0 2 2 2 1 Winged helix-turn helix HTH_32 PF13565.1 gi|452206581|ref|YP_007486703.1| - 8.1e-09 36.1 2.5 6.3e-08 33.3 0.2 3.3 2 1 1 3 3 3 1 Homeodomain-like domain HTH_23 PF13384.1 gi|452206581|ref|YP_007486703.1| - 1.9e-06 27.3 0.2 6e-06 25.7 0.0 1.9 2 0 0 2 2 2 1 Homeodomain-like domain rve PF00665.21 gi|452206581|ref|YP_007486703.1| - 5.1e-05 23.3 0.0 0.00053 20.0 0.0 2.3 2 0 0 2 2 2 1 Integrase core domain HTH_28 PF13518.1 gi|452206581|ref|YP_007486703.1| - 0.0002 21.2 0.0 0.0011 18.8 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_Tnp_1 PF01527.15 gi|452206581|ref|YP_007486703.1| - 0.00059 19.7 0.0 0.0012 18.7 0.0 1.5 1 0 0 1 1 1 1 Transposase HTH_38 PF13936.1 gi|452206581|ref|YP_007486703.1| - 0.0061 16.0 0.0 0.03 13.8 0.0 2.2 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_30 PF13556.1 gi|452206581|ref|YP_007486703.1| - 0.013 15.1 0.0 0.026 14.1 0.0 1.4 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain DDE_1 PF03184.14 gi|452206581|ref|YP_007486703.1| - 0.038 13.1 0.0 0.094 11.8 0.0 1.6 1 0 0 1 1 1 0 DDE superfamily endonuclease DDE_Tnp_ISAZ013 PF07592.6 gi|452206581|ref|YP_007486703.1| - 0.058 12.1 0.0 7.7 5.1 0.0 2.2 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain HTH_21 PF13276.1 gi|452206581|ref|YP_007486703.1| - 0.074 13.0 0.0 0.18 11.8 0.0 1.5 1 0 0 1 1 1 0 HTH-like domain Sigma70_r4_2 PF08281.7 gi|452206581|ref|YP_007486703.1| - 0.12 11.8 0.0 0.32 10.5 0.0 1.7 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_Tnp_ISL3 PF13542.1 gi|452206581|ref|YP_007486703.1| - 0.13 11.5 0.0 0.91 8.7 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 MarR PF01047.17 gi|452206581|ref|YP_007486703.1| - 0.14 11.8 0.0 0.61 9.8 0.0 2.0 2 0 0 2 2 2 0 MarR family PadR PF03551.9 gi|452206582|ref|YP_007486704.1| - 9.4e-08 31.7 0.0 2.4e-07 30.4 0.0 1.7 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family FUR PF01475.14 gi|452206582|ref|YP_007486704.1| - 0.01 15.7 0.0 0.016 15.0 0.0 1.4 1 0 0 1 1 1 0 Ferric uptake regulator family GvpL_GvpF PF06386.6 gi|452206583|ref|YP_007486705.1| - 3.1e-52 177.6 0.2 9e-29 100.7 0.0 2.0 1 1 1 2 2 2 2 Gas vesicle synthesis protein GvpL/GvpF GvpG PF05120.7 gi|452206584|ref|YP_007486706.1| - 0.0046 16.7 1.8 0.0054 16.5 1.3 1.2 1 0 0 1 1 1 1 Gas vesicle protein G SHOCT PF09851.4 gi|452206584|ref|YP_007486706.1| - 0.23 11.0 3.0 0.51 9.8 1.5 2.0 2 0 0 2 2 2 0 Short C-terminal domain GvpH PF05455.6 gi|452206585|ref|YP_007486707.1| - 1.9e-34 118.8 3.0 2.2e-34 118.6 2.1 1.0 1 0 0 1 1 1 1 GvpH DUF853 PF05872.7 gi|452206586|ref|YP_007486708.1| - 0.2 9.9 5.7 0.22 9.8 3.9 1.0 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF853) DUF2052 PF09747.4 gi|452206586|ref|YP_007486708.1| - 0.33 10.8 8.0 0.38 10.6 5.5 1.1 1 0 0 1 1 1 0 Coiled-coil domain containing protein (DUF2052) Borrelia_P83 PF05262.6 gi|452206586|ref|YP_007486708.1| - 0.42 8.8 15.4 0.5 8.5 10.7 1.0 1 0 0 1 1 1 0 Borrelia P83/100 protein Selenoprotein_S PF06936.6 gi|452206586|ref|YP_007486708.1| - 0.68 9.4 12.3 0.84 9.1 8.5 1.1 1 0 0 1 1 1 0 Selenoprotein S (SelS) BTV_NS2 PF04514.7 gi|452206586|ref|YP_007486708.1| - 0.68 8.7 8.2 0.76 8.5 5.7 1.1 1 0 0 1 1 1 0 Bluetongue virus non-structural protein NS2 PV-1 PF06637.6 gi|452206586|ref|YP_007486708.1| - 0.85 8.1 9.7 1 7.8 6.7 1.0 1 0 0 1 1 1 0 PV-1 protein (PLVAP) DUF3584 PF12128.3 gi|452206586|ref|YP_007486708.1| - 0.98 6.6 12.7 1 6.5 8.8 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) Rgp1 PF08737.5 gi|452206586|ref|YP_007486708.1| - 1.2 8.1 6.6 1.3 8.0 4.5 1.1 1 0 0 1 1 1 0 Rgp1 DUF4551 PF15087.1 gi|452206586|ref|YP_007486708.1| - 1.2 7.4 11.0 1.4 7.1 7.6 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF4551) PA26 PF04636.8 gi|452206586|ref|YP_007486708.1| - 3.6 6.1 8.3 4 6.0 5.8 1.0 1 0 0 1 1 1 0 PA26 p53-induced protein (sestrin) Mnd1 PF03962.10 gi|452206586|ref|YP_007486708.1| - 5.1 6.7 12.9 6.8 6.3 8.9 1.2 1 0 0 1 1 1 0 Mnd1 family DUF3886 PF13025.1 gi|452206586|ref|YP_007486708.1| - 6.1 6.8 16.5 11 6.0 11.5 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3886) DUF2413 PF10310.4 gi|452206586|ref|YP_007486708.1| - 6.2 5.5 11.4 6.8 5.3 7.9 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2413) IncA PF04156.9 gi|452206586|ref|YP_007486708.1| - 7.2 6.1 7.5 9.3 5.7 5.2 1.1 1 0 0 1 1 1 0 IncA protein DUF4407 PF14362.1 gi|452206586|ref|YP_007486708.1| - 8.2 5.2 9.2 9.6 5.0 6.4 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) Gas_vesicle PF00741.13 gi|452206587|ref|YP_007486709.1| - 5.9e-16 58.0 3.5 7.7e-16 57.6 2.4 1.2 1 0 0 1 1 1 1 Gas vesicle protein GvpK PF05121.7 gi|452206588|ref|YP_007486710.1| - 1.5e-27 95.2 11.4 2.7e-27 94.4 7.5 1.6 1 1 1 2 2 2 1 Gas vesicle protein K DUF948 PF06103.6 gi|452206588|ref|YP_007486710.1| - 0.0042 16.9 0.4 0.0061 16.3 0.3 1.2 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF948) End3 PF12761.2 gi|452206588|ref|YP_007486710.1| - 0.0081 15.8 1.7 0.0097 15.5 1.2 1.2 1 0 0 1 1 1 1 Actin cytoskeleton-regulatory complex protein END3 IFP_35_N PF07334.8 gi|452206588|ref|YP_007486710.1| - 0.0084 16.0 1.5 0.012 15.5 1.1 1.3 1 0 0 1 1 1 1 Interferon-induced 35 kDa protein (IFP 35) N-terminus HSP70 PF00012.15 gi|452206588|ref|YP_007486710.1| - 0.01 13.8 0.6 0.012 13.6 0.4 1.0 1 0 0 1 1 1 0 Hsp70 protein FlxA PF14282.1 gi|452206588|ref|YP_007486710.1| - 0.011 15.7 2.2 0.014 15.2 1.5 1.2 1 0 0 1 1 1 0 FlxA-like protein Filament PF00038.16 gi|452206588|ref|YP_007486710.1| - 0.012 15.0 5.1 0.015 14.7 3.5 1.1 1 0 0 1 1 1 0 Intermediate filament protein TPD52 PF04201.10 gi|452206588|ref|YP_007486710.1| - 0.022 14.4 1.1 0.023 14.4 0.8 1.1 1 0 0 1 1 1 0 Tumour protein D52 family OmpH PF03938.9 gi|452206588|ref|YP_007486710.1| - 0.037 13.9 1.7 0.043 13.7 1.2 1.2 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) Erythro_esteras PF05139.9 gi|452206588|ref|YP_007486710.1| - 0.041 13.0 0.2 0.047 12.8 0.2 1.1 1 0 0 1 1 1 0 Erythromycin esterase Uds1 PF15456.1 gi|452206588|ref|YP_007486710.1| - 0.041 13.8 3.4 0.086 12.8 2.4 1.6 1 1 0 1 1 1 0 Up-regulated During Septation Tropomyosin_1 PF12718.2 gi|452206588|ref|YP_007486710.1| - 0.055 13.3 6.3 0.079 12.7 4.4 1.3 1 0 0 1 1 1 0 Tropomyosin like EMP24_GP25L PF01105.19 gi|452206588|ref|YP_007486710.1| - 0.074 12.7 0.9 0.087 12.5 0.6 1.2 1 0 0 1 1 1 0 emp24/gp25L/p24 family/GOLD bZIP_Maf PF03131.12 gi|452206588|ref|YP_007486710.1| - 0.08 13.2 5.9 1.2 9.4 1.5 2.2 1 1 1 2 2 2 0 bZIP Maf transcription factor AAA_32 PF13654.1 gi|452206588|ref|YP_007486710.1| - 0.096 11.3 2.1 0.11 11.1 1.5 1.1 1 0 0 1 1 1 0 AAA domain DUF1664 PF07889.7 gi|452206588|ref|YP_007486710.1| - 0.098 12.4 1.2 0.14 11.9 0.6 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF1664) NPV_P10 PF05531.7 gi|452206588|ref|YP_007486710.1| - 0.1 12.8 1.4 0.33 11.2 1.0 2.0 1 1 0 1 1 1 0 Nucleopolyhedrovirus P10 protein DUF3573 PF12097.3 gi|452206588|ref|YP_007486710.1| - 0.11 11.0 0.1 0.13 10.8 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3573) Spc24 PF08286.6 gi|452206588|ref|YP_007486710.1| - 0.12 12.0 5.5 0.18 11.5 3.8 1.4 1 1 0 1 1 1 0 Spc24 subunit of Ndc80 APG6 PF04111.7 gi|452206588|ref|YP_007486710.1| - 0.12 11.3 4.8 0.15 11.1 3.3 1.1 1 0 0 1 1 1 0 Autophagy protein Apg6 Halogen_Hydrol PF10112.4 gi|452206588|ref|YP_007486710.1| - 0.13 11.6 0.1 0.15 11.4 0.0 1.1 1 0 0 1 1 1 0 5-bromo-4-chloroindolyl phosphate hydrolysis protein Bacillus_HBL PF05791.6 gi|452206588|ref|YP_007486710.1| - 0.14 11.5 0.7 0.17 11.2 0.5 1.2 1 0 0 1 1 1 0 Bacillus haemolytic enterotoxin (HBL) CorA PF01544.13 gi|452206588|ref|YP_007486710.1| - 0.14 11.1 1.1 0.19 10.7 0.8 1.2 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein ApoC-I PF04691.7 gi|452206588|ref|YP_007486710.1| - 0.17 11.5 0.9 0.65 9.7 0.3 2.0 1 1 1 2 2 2 0 Apolipoprotein C-I (ApoC-1) AKNA PF12443.3 gi|452206588|ref|YP_007486710.1| - 0.19 11.7 3.9 0.5 10.3 2.7 1.8 1 1 0 1 1 1 0 AT-hook-containing transcription factor HAMP PF00672.20 gi|452206588|ref|YP_007486710.1| - 0.32 11.2 4.6 0.19 11.9 0.7 2.2 1 1 1 2 2 2 0 HAMP domain PEP-utilisers_N PF05524.8 gi|452206588|ref|YP_007486710.1| - 0.48 10.2 4.2 1 9.1 2.9 1.7 1 1 0 1 1 1 0 PEP-utilising enzyme, N-terminal 5_nucleotid PF05761.9 gi|452206588|ref|YP_007486710.1| - 0.54 8.7 2.4 0.65 8.4 1.7 1.0 1 0 0 1 1 1 0 5' nucleotidase family IncA PF04156.9 gi|452206588|ref|YP_007486710.1| - 0.61 9.6 6.6 0.88 9.1 4.6 1.4 1 0 0 1 1 1 0 IncA protein SlyX PF04102.7 gi|452206588|ref|YP_007486710.1| - 0.69 10.3 7.1 1.1 9.6 2.7 2.4 1 1 1 2 2 2 0 SlyX GvpL_GvpF PF06386.6 gi|452206589|ref|YP_007486711.1| - 2.7e-74 249.9 0.0 3.1e-74 249.7 0.0 1.0 1 0 0 1 1 1 1 Gas vesicle synthesis protein GvpL/GvpF Gas_vesicle PF00741.13 gi|452206590|ref|YP_007486712.1| - 7.4e-14 51.3 7.9 8.5e-14 51.1 5.5 1.1 1 0 0 1 1 1 1 Gas vesicle protein DUF70 PF01901.11 gi|452206590|ref|YP_007486712.1| - 0.098 11.6 0.0 0.1 11.5 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function DUF70 MraZ PF02381.13 gi|452206591|ref|YP_007486713.1| - 0.024 14.4 0.0 0.042 13.5 0.0 1.5 1 0 0 1 1 1 0 MraZ protein PIN PF01850.16 gi|452206592|ref|YP_007486714.1| - 2.4e-08 34.3 0.8 2.9e-08 34.0 0.6 1.1 1 0 0 1 1 1 1 PIN domain CM_2 PF01817.16 gi|452206593|ref|YP_007486715.1| - 4.3e-17 61.9 4.7 5e-17 61.7 3.3 1.1 1 0 0 1 1 1 1 Chorismate mutase type II DUF4404 PF14357.1 gi|452206593|ref|YP_007486715.1| - 0.045 14.1 1.2 0.067 13.6 0.8 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4404) GHMP_kinases_N PF00288.21 gi|452206594|ref|YP_007486716.1| - 1.7e-11 43.9 4.0 4.4e-11 42.6 2.1 2.2 2 0 0 2 2 2 1 GHMP kinases N terminal domain DUF982 PF06169.7 gi|452206594|ref|YP_007486716.1| - 0.34 10.6 4.5 2.1 8.1 1.8 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF982) Glyoxalase_2 PF12681.2 gi|452206595|ref|YP_007486717.1| - 2.5e-21 76.2 0.0 3.2e-21 75.9 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase PF00903.20 gi|452206595|ref|YP_007486717.1| - 3.8e-16 59.2 0.0 4.8e-16 58.9 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.1 gi|452206595|ref|YP_007486717.1| - 1.1e-12 47.8 0.0 1.5e-12 47.5 0.0 1.2 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.1 gi|452206595|ref|YP_007486717.1| - 3.6e-05 23.7 0.0 5.3e-05 23.1 0.0 1.2 1 0 0 1 1 1 1 Glyoxalase-like domain Archease PF01951.11 gi|452206596|ref|YP_007486718.1| - 3e-25 88.7 0.0 3.4e-25 88.5 0.0 1.0 1 0 0 1 1 1 1 Archease protein family (MTH1598/TM1083) Na_Ca_ex PF01699.19 gi|452206597|ref|YP_007486719.1| - 1.6e-37 128.2 22.0 1.4e-20 73.3 6.4 2.1 2 0 0 2 2 2 2 Sodium/calcium exchanger protein AzlD PF05437.7 gi|452206598|ref|YP_007486720.1| - 6.2e-26 90.2 11.4 7.2e-26 90.0 7.9 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport protein (AzlD) AzlC PF03591.9 gi|452206599|ref|YP_007486721.1| - 1e-41 142.2 11.2 1.9e-41 141.3 7.8 1.5 1 0 0 1 1 1 1 AzlC protein Acetyltransf_1 PF00583.19 gi|452206600|ref|YP_007486722.1| - 4.4e-13 49.0 0.0 8.7e-13 48.1 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|452206600|ref|YP_007486722.1| - 1.9e-12 47.1 0.0 3.9e-12 46.1 0.0 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|452206600|ref|YP_007486722.1| - 3.2e-11 42.8 0.0 6.5e-11 41.8 0.0 1.5 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_10 PF13673.1 gi|452206600|ref|YP_007486722.1| - 4.9e-11 42.7 0.1 6.3e-11 42.4 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|452206600|ref|YP_007486722.1| - 0.00023 21.0 0.0 0.00026 20.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|452206600|ref|YP_007486722.1| - 0.0023 17.7 0.0 0.0042 16.9 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|452206600|ref|YP_007486722.1| - 0.011 15.6 0.0 0.028 14.3 0.0 1.6 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|452206600|ref|YP_007486722.1| - 0.014 15.2 0.1 0.032 14.1 0.0 1.6 2 0 0 2 2 2 0 GCN5-related N-acetyl-transferase Acetyltransf_3 PF13302.1 gi|452206600|ref|YP_007486722.1| - 0.021 14.9 0.0 0.027 14.6 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain DNA_primase_S PF01896.14 gi|452206601|ref|YP_007486723.1| - 5.3e-22 78.1 0.0 8.6e-22 77.5 0.0 1.3 1 0 0 1 1 1 1 Eukaryotic and archaeal DNA primase small subunit MutS_IV PF05190.13 gi|452206601|ref|YP_007486723.1| - 0.15 12.2 0.0 0.23 11.6 0.0 1.3 1 0 0 1 1 1 0 MutS family domain IV YuzL PF14115.1 gi|452206602|ref|YP_007486724.1| - 0.13 12.5 1.4 0.39 11.0 1.0 1.8 1 0 0 1 1 1 0 YuzL-like protein AAA PF00004.24 gi|452206604|ref|YP_007486726.1| - 2.1e-100 332.1 0.0 8.2e-49 165.1 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.13 gi|452206604|ref|YP_007486726.1| - 4.5e-24 84.2 0.1 3.4e-23 81.4 0.1 2.4 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), N-terminal domain AAA_2 PF07724.9 gi|452206604|ref|YP_007486726.1| - 1.1e-17 64.4 0.0 6.6e-09 35.9 0.0 2.5 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) RuvB_N PF05496.7 gi|452206604|ref|YP_007486726.1| - 7.2e-16 57.9 0.0 1.3e-07 30.9 0.0 2.7 3 0 0 3 3 3 2 Holliday junction DNA helicase ruvB N-terminus AAA_16 PF13191.1 gi|452206604|ref|YP_007486726.1| - 1.5e-14 54.3 0.0 1.3e-07 31.8 0.0 3.1 2 1 0 2 2 2 2 AAA ATPase domain CDC48_2 PF02933.12 gi|452206604|ref|YP_007486726.1| - 2.4e-14 52.7 0.1 5.9e-14 51.4 0.1 1.7 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), domain 2 AAA_14 PF13173.1 gi|452206604|ref|YP_007486726.1| - 5.9e-12 45.5 0.0 0.00013 21.9 0.0 2.7 3 0 0 3 3 2 2 AAA domain AAA_22 PF13401.1 gi|452206604|ref|YP_007486726.1| - 6.1e-12 45.8 0.2 0.0005 20.2 0.0 3.9 2 2 0 2 2 2 2 AAA domain AAA_17 PF13207.1 gi|452206604|ref|YP_007486726.1| - 2.1e-11 44.7 1.4 0.00035 21.3 0.0 3.4 3 2 0 3 3 2 2 AAA domain AAA_5 PF07728.9 gi|452206604|ref|YP_007486726.1| - 1.8e-10 40.6 1.0 0.0022 17.7 0.1 4.5 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) TIP49 PF06068.8 gi|452206604|ref|YP_007486726.1| - 3.1e-10 39.3 0.0 0.00018 20.3 0.0 2.4 2 0 0 2 2 2 2 TIP49 C-terminus AAA_19 PF13245.1 gi|452206604|ref|YP_007486726.1| - 1.2e-09 37.7 0.0 0.002 17.8 0.0 2.8 2 0 0 2 2 2 2 Part of AAA domain Zeta_toxin PF06414.7 gi|452206604|ref|YP_007486726.1| - 8.4e-09 34.8 0.0 0.0027 16.8 0.0 2.6 2 0 0 2 2 2 2 Zeta toxin IstB_IS21 PF01695.12 gi|452206604|ref|YP_007486726.1| - 8.6e-09 35.0 0.0 0.001 18.5 0.0 2.5 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_33 PF13671.1 gi|452206604|ref|YP_007486726.1| - 1.3e-08 34.8 0.0 0.0017 18.2 0.0 2.6 2 0 0 2 2 2 2 AAA domain RNA_helicase PF00910.17 gi|452206604|ref|YP_007486726.1| - 3.4e-08 33.5 0.0 0.0082 16.2 0.0 2.7 2 1 0 2 2 2 2 RNA helicase AAA_18 PF13238.1 gi|452206604|ref|YP_007486726.1| - 3.1e-07 30.7 0.0 0.031 14.5 0.0 3.4 3 0 0 3 3 3 2 AAA domain AAA_3 PF07726.6 gi|452206604|ref|YP_007486726.1| - 5.5e-07 29.2 0.0 0.0098 15.5 0.0 2.6 2 1 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.1 gi|452206604|ref|YP_007486726.1| - 8.9e-07 28.4 6.2 0.32 10.3 0.0 4.4 2 2 1 4 4 4 3 AAA domain Mg_chelatase PF01078.16 gi|452206604|ref|YP_007486726.1| - 1e-06 28.0 0.6 0.037 13.1 0.0 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI KaiC PF06745.8 gi|452206604|ref|YP_007486726.1| - 3.3e-06 26.4 0.3 0.29 10.2 0.0 3.4 2 1 1 3 3 3 2 KaiC Sigma54_activat PF00158.21 gi|452206604|ref|YP_007486726.1| - 3.6e-06 26.5 0.0 0.19 11.2 0.0 3.8 3 1 0 3 3 3 2 Sigma-54 interaction domain DUF815 PF05673.8 gi|452206604|ref|YP_007486726.1| - 5.6e-06 25.4 0.0 0.01 14.7 0.0 3.2 3 1 0 3 3 3 1 Protein of unknown function (DUF815) NACHT PF05729.7 gi|452206604|ref|YP_007486726.1| - 5.6e-06 26.1 0.1 0.58 9.7 0.0 4.3 4 1 1 5 5 5 2 NACHT domain AAA_28 PF13521.1 gi|452206604|ref|YP_007486726.1| - 8.8e-06 25.7 0.0 0.12 12.2 0.0 2.8 2 0 0 2 2 2 2 AAA domain PhoH PF02562.11 gi|452206604|ref|YP_007486726.1| - 1.3e-05 24.5 0.1 0.12 11.5 0.0 2.5 2 0 0 2 2 2 2 PhoH-like protein Sigma54_activ_2 PF14532.1 gi|452206604|ref|YP_007486726.1| - 1.5e-05 25.1 0.0 0.18 11.8 0.0 2.9 3 0 0 3 3 2 2 Sigma-54 interaction domain AAA_30 PF13604.1 gi|452206604|ref|YP_007486726.1| - 2.2e-05 24.1 0.0 0.28 10.7 0.0 2.8 2 0 0 2 2 2 2 AAA domain AAA_11 PF13086.1 gi|452206604|ref|YP_007486726.1| - 3.4e-05 23.5 0.0 0.18 11.3 0.0 2.4 2 0 0 2 2 2 2 AAA domain ABC_tran PF00005.22 gi|452206604|ref|YP_007486726.1| - 3.6e-05 24.0 0.1 0.33 11.2 0.0 3.0 3 0 0 3 3 2 2 ABC transporter AAA_24 PF13479.1 gi|452206604|ref|YP_007486726.1| - 4.8e-05 23.0 0.0 0.071 12.6 0.0 2.5 2 0 0 2 2 2 2 AAA domain UPF0079 PF02367.12 gi|452206604|ref|YP_007486726.1| - 9.9e-05 21.9 0.0 0.41 10.2 0.0 2.4 2 0 0 2 2 2 2 Uncharacterised P-loop hydrolase UPF0079 NB-ARC PF00931.17 gi|452206604|ref|YP_007486726.1| - 0.00011 21.1 0.0 0.36 9.6 0.0 2.3 2 0 0 2 2 2 2 NB-ARC domain Arch_ATPase PF01637.13 gi|452206604|ref|YP_007486726.1| - 0.00012 21.8 0.0 2.4 7.7 0.0 3.4 2 1 1 3 3 3 1 Archaeal ATPase DUF2075 PF09848.4 gi|452206604|ref|YP_007486726.1| - 0.00014 20.9 0.0 0.2 10.5 0.0 2.3 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) NTPase_1 PF03266.10 gi|452206604|ref|YP_007486726.1| - 0.00022 20.9 0.9 0.87 9.2 0.0 3.5 2 2 1 3 3 3 1 NTPase Parvo_NS1 PF01057.12 gi|452206604|ref|YP_007486726.1| - 0.00058 18.8 0.0 0.44 9.3 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 T2SE PF00437.15 gi|452206604|ref|YP_007486726.1| - 0.00072 18.5 0.0 0.71 8.7 0.0 2.5 2 0 0 2 2 2 2 Type II/IV secretion system protein ResIII PF04851.10 gi|452206604|ref|YP_007486726.1| - 0.0017 18.1 0.0 1.7 8.4 0.0 2.4 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit KAP_NTPase PF07693.9 gi|452206604|ref|YP_007486726.1| - 0.0024 16.9 0.0 4.1 6.2 0.0 3.1 2 2 1 3 3 3 0 KAP family P-loop domain Guanylate_kin PF00625.16 gi|452206604|ref|YP_007486726.1| - 0.0038 16.6 0.5 14 5.0 0.0 3.9 2 2 2 4 4 4 0 Guanylate kinase Bac_DnaA PF00308.13 gi|452206604|ref|YP_007486726.1| - 0.004 16.8 0.0 0.81 9.2 0.0 2.4 2 0 0 2 2 2 1 Bacterial dnaA protein ATP-synt_ab PF00006.20 gi|452206604|ref|YP_007486726.1| - 0.0046 16.4 0.0 0.42 10.0 0.0 2.6 2 1 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain Vps4_C PF09336.5 gi|452206604|ref|YP_007486726.1| - 0.019 14.8 0.0 2 8.3 0.0 3.2 4 0 0 4 4 2 0 Vps4 C terminal oligomerisation domain Cytidylate_kin2 PF13189.1 gi|452206604|ref|YP_007486726.1| - 0.02 14.7 0.0 1.5 8.7 0.0 2.4 2 0 0 2 2 2 0 Cytidylate kinase-like family AAA_29 PF13555.1 gi|452206604|ref|YP_007486726.1| - 0.026 14.0 0.0 6.5 6.3 0.0 2.8 3 0 0 3 3 2 0 P-loop containing region of AAA domain CPT PF07931.7 gi|452206604|ref|YP_007486726.1| - 0.044 13.3 0.0 6 6.4 0.0 2.4 2 0 0 2 2 2 0 Chloramphenicol phosphotransferase-like protein KTI12 PF08433.5 gi|452206604|ref|YP_007486726.1| - 0.049 12.8 0.0 8.5 5.4 0.0 2.3 2 0 0 2 2 2 0 Chromatin associated protein KTI12 SKI PF01202.17 gi|452206604|ref|YP_007486726.1| - 0.056 13.3 0.0 6.5 6.6 0.0 2.6 2 0 0 2 2 2 0 Shikimate kinase AFG1_ATPase PF03969.11 gi|452206604|ref|YP_007486726.1| - 0.06 12.1 0.0 3.3 6.4 0.0 2.4 2 0 0 2 2 2 0 AFG1-like ATPase PIF1 PF05970.9 gi|452206604|ref|YP_007486726.1| - 0.12 11.2 0.0 11 4.8 0.0 2.9 3 0 0 3 3 3 0 PIF1-like helicase Torsin PF06309.6 gi|452206604|ref|YP_007486726.1| - 0.18 11.7 0.0 10 5.9 0.0 2.4 2 0 0 2 2 2 0 Torsin DEAD PF00270.24 gi|452206604|ref|YP_007486726.1| - 0.2 11.1 1.3 36 3.7 0.0 3.3 2 2 1 4 4 4 0 DEAD/DEAH box helicase Zot PF05707.7 gi|452206604|ref|YP_007486726.1| - 0.21 11.0 0.3 34 3.8 0.1 3.2 2 1 0 2 2 2 0 Zonular occludens toxin (Zot) Rad17 PF03215.10 gi|452206604|ref|YP_007486726.1| - 0.37 9.4 0.0 6.6 5.2 0.0 2.0 2 0 0 2 2 2 0 Rad17 cell cycle checkpoint protein zf-ribbon_3 PF13248.1 gi|452206605|ref|YP_007486727.1| - 0.0006 18.9 0.6 0.059 12.5 0.1 2.2 2 0 0 2 2 2 1 zinc-ribbon domain DZR PF12773.2 gi|452206605|ref|YP_007486727.1| - 0.00066 19.4 0.2 0.00096 18.9 0.1 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-Mss51 PF13824.1 gi|452206605|ref|YP_007486727.1| - 0.036 13.9 0.4 0.053 13.3 0.3 1.4 1 1 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-CHY PF05495.7 gi|452206605|ref|YP_007486727.1| - 0.042 13.9 0.1 0.048 13.8 0.1 1.1 1 0 0 1 1 1 0 CHY zinc finger Lar_restr_allev PF14354.1 gi|452206605|ref|YP_007486727.1| - 0.073 13.3 1.0 0.2 11.9 0.7 1.8 1 1 0 1 1 1 0 Restriction alleviation protein Lar zinc_ribbon_2 PF13240.1 gi|452206605|ref|YP_007486727.1| - 0.12 11.9 0.5 3.3 7.2 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain UPF0547 PF10571.4 gi|452206605|ref|YP_007486727.1| - 0.12 12.0 2.1 0.21 11.3 0.2 2.0 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 HypA PF01155.14 gi|452206605|ref|YP_007486727.1| - 0.12 12.0 0.2 0.15 11.7 0.1 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Zn-ribbon_8 PF09723.5 gi|452206605|ref|YP_007486727.1| - 0.19 11.6 0.9 1.1 9.2 0.0 2.1 2 0 0 2 2 2 0 Zinc ribbon domain zinc_ribbon_5 PF13719.1 gi|452206605|ref|YP_007486727.1| - 0.31 10.6 1.4 0.98 9.0 1.0 1.7 1 1 1 2 2 2 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|452206605|ref|YP_007486727.1| - 0.73 9.1 3.6 1.8 7.9 2.5 1.7 1 1 1 2 2 2 0 TFIIB zinc-binding zf-RING_3 PF14369.1 gi|452206605|ref|YP_007486727.1| - 2.3 8.3 5.0 14 5.7 3.0 2.1 1 1 1 2 2 2 0 zinc-finger IF-2B PF01008.12 gi|452206606|ref|YP_007486728.1| - 1.1e-45 155.7 0.7 1.4e-45 155.5 0.5 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family DEAD_assoc PF08494.6 gi|452206607|ref|YP_007486729.1| - 1e-41 142.7 0.0 2e-41 141.7 0.0 1.5 1 0 0 1 1 1 1 DEAD/H associated DEAD PF00270.24 gi|452206607|ref|YP_007486729.1| - 1e-29 103.2 0.0 3.3e-29 101.5 0.0 1.8 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|452206607|ref|YP_007486729.1| - 7.1e-18 64.2 0.0 7.3e-17 61.0 0.0 2.5 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|452206607|ref|YP_007486729.1| - 1.2e-07 31.8 0.0 2.1e-07 30.9 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_25 PF13481.1 gi|452206607|ref|YP_007486729.1| - 1.8e-06 27.4 1.0 6.4e-05 22.4 0.2 2.7 2 0 0 2 2 2 1 AAA domain SNF2_N PF00176.18 gi|452206607|ref|YP_007486729.1| - 0.00014 20.7 0.0 0.00028 19.8 0.0 1.4 1 0 0 1 1 1 1 SNF2 family N-terminal domain Zn-ribbon_8 PF09723.5 gi|452206607|ref|YP_007486729.1| - 0.0022 17.9 1.1 0.0042 17.0 0.7 1.5 1 0 0 1 1 1 1 Zinc ribbon domain AAA_19 PF13245.1 gi|452206607|ref|YP_007486729.1| - 0.0034 17.1 0.2 0.0034 17.1 0.1 3.1 3 0 0 3 3 3 1 Part of AAA domain AAA_22 PF13401.1 gi|452206607|ref|YP_007486729.1| - 0.11 12.6 0.9 1 9.4 0.2 2.9 2 1 0 2 2 2 0 AAA domain T4SS-DNA_transf PF02534.9 gi|452206607|ref|YP_007486729.1| - 0.19 10.2 0.0 0.33 9.4 0.0 1.2 1 0 0 1 1 1 0 Type IV secretory system Conjugative DNA transfer Thioredoxin PF00085.15 gi|452206608|ref|YP_007486730.1| - 5.2e-25 87.1 0.0 5.8e-25 86.9 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|452206608|ref|YP_007486730.1| - 7.8e-10 38.9 0.1 7.5e-09 35.7 0.1 1.9 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_7 PF13899.1 gi|452206608|ref|YP_007486730.1| - 2.8e-07 30.4 0.0 4e-07 29.9 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin-like Thioredoxin_8 PF13905.1 gi|452206608|ref|YP_007486730.1| - 1.7e-06 28.0 0.0 0.0017 18.4 0.0 2.2 1 1 1 2 2 2 2 Thioredoxin-like Thioredoxin_3 PF13192.1 gi|452206608|ref|YP_007486730.1| - 2.6e-05 23.9 0.0 3.5e-05 23.5 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin domain DSBA PF01323.15 gi|452206608|ref|YP_007486730.1| - 4e-05 23.2 1.1 5.5e-05 22.8 0.1 1.6 1 1 1 2 2 2 1 DSBA-like thioredoxin domain TraF PF13728.1 gi|452206608|ref|YP_007486730.1| - 6.4e-05 22.5 0.0 8.5e-05 22.1 0.0 1.1 1 0 0 1 1 1 1 F plasmid transfer operon protein HyaE PF07449.6 gi|452206608|ref|YP_007486730.1| - 0.00093 19.0 0.0 0.0012 18.6 0.0 1.2 1 0 0 1 1 1 1 Hydrogenase-1 expression protein HyaE AhpC-TSA PF00578.16 gi|452206608|ref|YP_007486730.1| - 0.0033 17.1 0.0 0.04 13.5 0.0 1.9 1 1 1 2 2 2 1 AhpC/TSA family DUF836 PF05768.9 gi|452206608|ref|YP_007486730.1| - 0.004 17.3 0.0 0.005 17.0 0.0 1.3 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) Thioredoxin_9 PF14595.1 gi|452206608|ref|YP_007486730.1| - 0.0082 15.7 0.0 0.0099 15.4 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Redoxin PF08534.5 gi|452206608|ref|YP_007486730.1| - 0.046 13.2 0.1 0.11 12.0 0.1 1.7 1 1 0 1 1 1 0 Redoxin FLO_LFY PF01698.11 gi|452206608|ref|YP_007486730.1| - 0.082 11.7 0.0 0.089 11.6 0.0 1.0 1 0 0 1 1 1 0 Floricaula / Leafy protein Glutaredoxin PF00462.19 gi|452206608|ref|YP_007486730.1| - 0.11 12.5 0.0 0.16 12.0 0.0 1.3 1 0 0 1 1 1 0 Glutaredoxin GlyL_C PF12524.3 gi|452206609|ref|YP_007486731.1| - 0.045 13.6 0.1 1.2 9.0 0.2 2.6 1 1 1 2 2 2 0 dsDNA virus glycoprotein L C terminal Fer2 PF00111.22 gi|452206610|ref|YP_007486732.1| - 3.6e-10 39.4 2.1 4.8e-10 39.0 1.5 1.2 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_3 PF13085.1 gi|452206610|ref|YP_007486732.1| - 0.0024 17.6 0.2 0.0026 17.5 0.1 1.2 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain DHODB_Fe-S_bind PF10418.4 gi|452206610|ref|YP_007486732.1| - 0.097 12.1 0.3 0.19 11.2 0.1 1.6 2 0 0 2 2 2 0 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B MutS_V PF00488.16 gi|452206611|ref|YP_007486733.1| - 3.3e-10 39.7 0.0 5.7e-10 38.9 0.0 1.3 1 0 0 1 1 1 1 MutS domain V AAA_10 PF12846.2 gi|452206611|ref|YP_007486733.1| - 1.5e-05 24.5 1.1 0.00014 21.4 0.0 2.7 2 2 1 3 3 3 1 AAA-like domain MutS_III PF05192.13 gi|452206611|ref|YP_007486733.1| - 0.00081 19.2 0.0 0.0036 17.1 0.0 1.9 1 1 0 1 1 1 1 MutS domain III AAA_28 PF13521.1 gi|452206611|ref|YP_007486733.1| - 0.0039 17.1 0.0 0.015 15.2 0.0 2.1 1 0 0 1 1 1 1 AAA domain AAA_21 PF13304.1 gi|452206611|ref|YP_007486733.1| - 0.0067 16.4 0.0 0.017 15.1 0.0 1.6 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|452206611|ref|YP_007486733.1| - 0.008 15.6 0.0 0.018 14.5 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_14 PF13173.1 gi|452206611|ref|YP_007486733.1| - 0.07 13.0 0.0 0.14 12.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.1 gi|452206611|ref|YP_007486733.1| - 0.081 13.2 0.0 0.15 12.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|452206611|ref|YP_007486733.1| - 0.12 12.5 0.2 2.5 8.2 0.0 2.8 2 2 1 3 3 3 0 AAA domain FbpA PF05833.6 gi|452206612|ref|YP_007486734.1| - 5.1e-89 298.8 0.0 6.7e-89 298.5 0.0 1.1 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) DUF814 PF05670.8 gi|452206612|ref|YP_007486734.1| - 3.4e-26 90.9 0.0 5.8e-26 90.2 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF814) zf-HYPF PF07503.7 gi|452206612|ref|YP_007486734.1| - 0.087 12.2 0.1 0.17 11.3 0.0 1.5 1 0 0 1 1 1 0 HypF finger DUF4013 PF13197.1 gi|452206613|ref|YP_007486735.1| - 1e-23 83.4 8.2 1e-23 83.4 5.7 1.8 1 1 1 2 2 2 1 Protein of unknown function (DUF4013) eRF1_1 PF03463.10 gi|452206614|ref|YP_007486736.1| - 1.7e-33 114.9 0.1 2.6e-33 114.3 0.1 1.3 1 0 0 1 1 1 1 eRF1 domain 1 eRF1_3 PF03465.10 gi|452206614|ref|YP_007486736.1| - 1.4e-23 83.3 3.4 1.5e-23 83.2 0.1 2.6 3 0 0 3 3 3 1 eRF1 domain 3 eRF1_2 PF03464.10 gi|452206614|ref|YP_007486736.1| - 6.5e-22 78.2 0.3 1.5e-21 77.0 0.1 1.7 1 1 1 2 2 2 1 eRF1 domain 2 Glyco_hydro_3_C PF01915.17 gi|452206614|ref|YP_007486736.1| - 0.011 15.2 0.6 0.017 14.6 0.1 1.6 2 0 0 2 2 2 0 Glycosyl hydrolase family 3 C-terminal domain Lactamase_B_2 PF12706.2 gi|452206615|ref|YP_007486737.1| - 2.9e-16 59.6 0.1 3.7e-16 59.2 0.1 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|452206615|ref|YP_007486737.1| - 1.9e-09 37.4 8.0 6.5e-09 35.7 5.5 1.9 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.1 gi|452206615|ref|YP_007486737.1| - 0.0038 16.9 0.0 0.0065 16.1 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain DEAD_assoc PF08494.6 gi|452206616|ref|YP_007486738.1| - 5.6e-51 172.9 0.1 1.2e-50 171.8 0.1 1.6 1 0 0 1 1 1 1 DEAD/H associated DEAD PF00270.24 gi|452206616|ref|YP_007486738.1| - 4.9e-32 110.7 0.0 1.2e-29 102.9 0.0 2.3 2 0 0 2 2 2 2 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|452206616|ref|YP_007486738.1| - 1.9e-15 56.4 0.0 7.6e-14 51.3 0.0 2.6 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|452206616|ref|YP_007486738.1| - 7.6e-07 29.1 0.0 1.5e-06 28.1 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_22 PF13401.1 gi|452206616|ref|YP_007486738.1| - 0.00092 19.3 0.1 0.0057 16.7 0.0 2.3 2 0 0 2 2 2 1 AAA domain DNA_primase_S PF01896.14 gi|452206616|ref|YP_007486738.1| - 0.071 12.9 0.0 0.17 11.7 0.0 1.6 1 0 0 1 1 1 0 Eukaryotic and archaeal DNA primase small subunit PALP PF00291.20 gi|452206618|ref|YP_007486740.1| - 9.9e-65 218.7 1.7 1.2e-64 218.4 1.2 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ACP_syn_III_C PF08541.5 gi|452206618|ref|YP_007486740.1| - 0.044 13.8 0.1 3 7.9 0.0 2.9 3 0 0 3 3 3 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal DUF751 PF05421.6 gi|452206619|ref|YP_007486741.1| - 0.094 13.0 0.2 0.094 13.0 0.1 2.7 1 1 2 3 3 3 0 Protein of unknown function (DUF751) Form-deh_trans PF09163.6 gi|452206619|ref|YP_007486741.1| - 0.38 10.2 4.3 0.25 10.8 0.8 2.3 2 0 0 2 2 2 0 Formate dehydrogenase N, transmembrane Got1 PF04178.7 gi|452206619|ref|YP_007486741.1| - 0.39 10.8 10.2 0.47 10.5 7.1 1.2 1 0 0 1 1 1 0 Got1/Sft2-like family CAAD PF14159.1 gi|452206619|ref|YP_007486741.1| - 1.3 8.7 7.0 0.34 10.5 1.5 2.1 1 1 1 2 2 2 0 CAAD domains of cyanobacterial aminoacyl-tRNA synthetase DUF3017 PF11222.3 gi|452206619|ref|YP_007486741.1| - 2.5 7.9 9.7 0.066 13.0 1.4 2.3 2 1 1 3 3 3 0 Protein of unknown function (DUF3017) DUF4491 PF14898.1 gi|452206619|ref|YP_007486741.1| - 6.4 6.9 7.4 5 7.3 3.3 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4491) TrmB PF01978.14 gi|452206621|ref|YP_007486743.1| - 4.8e-13 48.6 0.0 6.1e-13 48.2 0.0 1.1 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|452206621|ref|YP_007486743.1| - 1.6e-06 27.6 0.3 2.5e-06 27.0 0.2 1.3 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|452206621|ref|YP_007486743.1| - 0.00045 19.7 0.2 0.00073 19.0 0.1 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR PF01047.17 gi|452206621|ref|YP_007486743.1| - 0.002 17.8 0.1 0.0031 17.1 0.1 1.3 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|452206621|ref|YP_007486743.1| - 0.019 15.3 0.1 0.029 14.7 0.1 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_20 PF12840.2 gi|452206621|ref|YP_007486743.1| - 0.061 13.1 0.9 0.095 12.5 0.6 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain Abhydrolase_2 PF02230.11 gi|452206622|ref|YP_007486744.1| - 5e-19 68.6 0.0 7.1e-19 68.1 0.0 1.1 1 0 0 1 1 1 1 Phospholipase/Carboxylesterase Abhydrolase_5 PF12695.2 gi|452206622|ref|YP_007486744.1| - 3.7e-14 52.7 0.2 6.7e-14 51.8 0.1 1.4 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_6 PF12697.2 gi|452206622|ref|YP_007486744.1| - 4.8e-10 39.7 6.4 5.9e-06 26.3 2.5 2.2 1 1 1 2 2 2 2 Alpha/beta hydrolase family Peptidase_S9 PF00326.16 gi|452206622|ref|YP_007486744.1| - 2.4e-08 33.4 0.0 0.00028 20.1 0.0 2.5 2 1 1 3 3 3 2 Prolyl oligopeptidase family DLH PF01738.13 gi|452206622|ref|YP_007486744.1| - 1e-06 28.1 0.0 1.6e-06 27.5 0.0 1.2 1 0 0 1 1 1 1 Dienelactone hydrolase family FSH1 PF03959.8 gi|452206622|ref|YP_007486744.1| - 7.2e-06 25.5 0.0 1.1e-05 24.9 0.0 1.3 1 0 0 1 1 1 1 Serine hydrolase (FSH1) LIP PF03583.9 gi|452206622|ref|YP_007486744.1| - 6.1e-05 22.3 0.0 0.015 14.4 0.0 2.2 1 1 0 2 2 2 2 Secretory lipase Esterase PF00756.15 gi|452206622|ref|YP_007486744.1| - 0.0007 19.0 0.0 0.0012 18.3 0.0 1.6 1 1 0 1 1 1 1 Putative esterase Abhydrolase_1 PF00561.15 gi|452206622|ref|YP_007486744.1| - 0.0064 16.0 0.0 0.01 15.3 0.0 1.4 1 1 0 1 1 1 1 alpha/beta hydrolase fold PEP-utilizers PF00391.18 gi|452206622|ref|YP_007486744.1| - 0.075 12.6 0.2 0.31 10.6 0.0 1.9 1 1 1 2 2 2 0 PEP-utilising enzyme, mobile domain zf-ribbon_3 PF13248.1 gi|452206623|ref|YP_007486745.1| - 0.0048 16.0 3.6 0.0071 15.5 2.5 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|452206623|ref|YP_007486745.1| - 0.0078 16.0 0.6 0.009 15.8 0.4 1.2 1 0 0 1 1 1 1 Double zinc ribbon GATA PF00320.22 gi|452206623|ref|YP_007486745.1| - 0.07 12.4 0.4 0.07 12.4 0.3 1.9 2 0 0 2 2 2 0 GATA zinc finger zinc_ribbon_2 PF13240.1 gi|452206623|ref|YP_007486745.1| - 0.13 11.7 2.9 0.22 11.0 2.0 1.4 1 0 0 1 1 1 0 zinc-ribbon domain YhfH PF14149.1 gi|452206623|ref|YP_007486745.1| - 0.2 11.4 0.9 1.5 8.6 0.1 2.1 2 0 0 2 2 2 0 YhfH-like protein UPF0547 PF10571.4 gi|452206623|ref|YP_007486745.1| - 0.38 10.4 4.3 1.8 8.3 3.0 1.9 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 Rubredoxin PF00301.15 gi|452206623|ref|YP_007486745.1| - 2.7 7.9 5.9 17 5.3 1.1 2.3 2 1 0 2 2 2 0 Rubredoxin zf-NADH-PPase PF09297.6 gi|452206623|ref|YP_007486745.1| - 5.9 6.4 6.4 2.3 7.7 0.7 2.3 2 1 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain UvrD-helicase PF00580.16 gi|452206624|ref|YP_007486746.1| - 3.1e-24 85.8 0.0 1.7e-22 80.1 0.0 2.2 1 1 0 1 1 1 1 UvrD/REP helicase N-terminal domain UvrD_C PF13361.1 gi|452206624|ref|YP_007486746.1| - 8.2e-13 48.5 0.0 7.9e-10 38.7 0.0 2.5 2 1 0 2 2 2 2 UvrD-like helicase C-terminal domain AAA_19 PF13245.1 gi|452206624|ref|YP_007486746.1| - 3.2e-10 39.6 0.1 9.6e-10 38.0 0.0 1.8 1 0 0 1 1 1 1 Part of AAA domain UvrD_C_2 PF13538.1 gi|452206624|ref|YP_007486746.1| - 1.4e-07 31.5 0.8 3.6e-06 27.0 0.2 2.8 2 1 0 2 2 2 1 UvrD-like helicase C-terminal domain Viral_helicase1 PF01443.13 gi|452206624|ref|YP_007486746.1| - 4.5e-06 26.3 0.2 0.63 9.5 0.0 4.1 4 1 0 4 4 4 3 Viral (Superfamily 1) RNA helicase AAA_11 PF13086.1 gi|452206624|ref|YP_007486746.1| - 0.00036 20.1 0.0 0.0029 17.2 0.0 2.2 3 0 0 3 3 3 1 AAA domain Herpes_ori_bp PF02399.10 gi|452206624|ref|YP_007486746.1| - 0.01 13.8 0.0 0.014 13.3 0.0 1.1 1 0 0 1 1 1 0 Origin of replication binding protein DEAD PF00270.24 gi|452206624|ref|YP_007486746.1| - 0.016 14.7 0.0 1.4 8.4 0.0 2.2 2 0 0 2 2 2 0 DEAD/DEAH box helicase AAA_25 PF13481.1 gi|452206624|ref|YP_007486746.1| - 0.022 14.1 0.0 0.34 10.2 0.0 2.4 2 0 0 2 2 2 0 AAA domain DUF2075 PF09848.4 gi|452206624|ref|YP_007486746.1| - 0.027 13.4 0.0 6.7 5.5 0.0 3.0 3 0 0 3 3 3 0 Uncharacterized conserved protein (DUF2075) AAA_22 PF13401.1 gi|452206624|ref|YP_007486746.1| - 0.049 13.7 0.0 9.2 6.4 0.0 2.7 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.1 gi|452206624|ref|YP_007486746.1| - 0.055 13.0 0.1 0.17 11.4 0.0 1.9 2 0 0 2 2 2 0 AAA domain APH PF01636.18 gi|452206625|ref|YP_007486747.1| - 5.7e-09 36.0 2.1 4.8e-05 23.2 0.1 2.3 1 1 1 2 2 2 2 Phosphotransferase enzyme family RIO1 PF01163.17 gi|452206625|ref|YP_007486747.1| - 5.8e-06 25.7 0.0 1.1e-05 24.9 0.0 1.4 1 0 0 1 1 1 1 RIO1 family Kdo PF06293.9 gi|452206625|ref|YP_007486747.1| - 8.4e-06 24.9 0.0 6.2e-05 22.1 0.0 2.0 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family Pkinase PF00069.20 gi|452206625|ref|YP_007486747.1| - 0.0028 16.8 0.0 0.0039 16.3 0.0 1.2 1 0 0 1 1 1 1 Protein kinase domain EcKinase PF02958.15 gi|452206625|ref|YP_007486747.1| - 0.088 11.9 0.0 0.12 11.4 0.0 1.2 1 0 0 1 1 1 0 Ecdysteroid kinase DDE_Tnp_IS240 PF13610.1 gi|452206626|ref|YP_007486748.1| - 2.5e-16 59.9 0.2 3.4e-16 59.4 0.2 1.2 1 0 0 1 1 1 1 DDE domain rve PF00665.21 gi|452206626|ref|YP_007486748.1| - 6e-05 23.1 0.2 8.9e-05 22.5 0.1 1.3 1 0 0 1 1 1 1 Integrase core domain DDE_Tnp_IS66 PF03050.9 gi|452206626|ref|YP_007486748.1| - 0.00018 20.8 0.1 0.00046 19.5 0.0 1.8 1 1 0 1 1 1 1 Transposase IS66 family DDE_3 PF13358.1 gi|452206626|ref|YP_007486748.1| - 0.012 15.3 0.0 0.038 13.7 0.0 1.8 1 1 0 1 1 1 0 DDE superfamily endonuclease HTH_28 PF13518.1 gi|452206626|ref|YP_007486748.1| - 0.065 13.2 0.0 2.2 8.3 0.0 2.5 2 0 0 2 2 2 0 Helix-turn-helix domain DDE_Tnp_1 PF01609.16 gi|452206626|ref|YP_007486748.1| - 0.29 10.6 2.0 3.2 7.2 1.4 2.1 1 1 0 1 1 1 0 Transposase DDE domain GATase_6 PF13522.1 gi|452206627|ref|YP_007486749.1| - 1.8e-22 79.7 0.0 6e-22 78.0 0.0 1.9 2 0 0 2 2 2 1 Glutamine amidotransferase domain GATase_7 PF13537.1 gi|452206627|ref|YP_007486749.1| - 1.5e-21 76.4 0.0 3.2e-21 75.3 0.0 1.6 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|452206627|ref|YP_007486749.1| - 1.7e-19 69.7 0.0 1.8e-13 49.9 0.0 3.1 1 1 1 2 2 2 2 Glutamine amidotransferases class-II Pribosyltran PF00156.22 gi|452206627|ref|YP_007486749.1| - 2.2e-09 37.0 0.2 6.4e-09 35.5 0.1 1.8 1 0 0 1 1 1 1 Phosphoribosyl transferase domain GATase_4 PF13230.1 gi|452206627|ref|YP_007486749.1| - 0.0036 16.0 0.0 0.0055 15.4 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferases class-II DUF3874 PF12990.2 gi|452206627|ref|YP_007486749.1| - 0.15 12.1 0.0 0.31 11.1 0.0 1.5 1 0 0 1 1 1 0 Domain of unknonw function from B. Theta Gene description (DUF3874) Ribosomal_L37e PF01907.14 gi|452206628|ref|YP_007486750.1| - 7.3e-25 86.5 13.1 7.8e-25 86.4 9.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L37e DZR PF12773.2 gi|452206628|ref|YP_007486750.1| - 0.0015 18.2 2.6 0.0019 17.9 1.8 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|452206628|ref|YP_007486750.1| - 0.019 14.1 4.4 0.046 12.9 3.0 1.7 1 1 1 2 2 2 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|452206628|ref|YP_007486750.1| - 0.029 14.0 3.9 0.036 13.7 2.7 1.2 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Ribosomal_L32p PF01783.18 gi|452206628|ref|YP_007486750.1| - 0.053 13.7 3.0 0.078 13.1 2.1 1.4 1 0 0 1 1 1 0 Ribosomal L32p protein family HypA PF01155.14 gi|452206628|ref|YP_007486750.1| - 0.059 13.0 1.8 0.069 12.8 1.3 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-RanBP PF00641.13 gi|452206628|ref|YP_007486750.1| - 0.12 11.5 2.5 1.1 8.4 0.1 2.2 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others zinc_ribbon_6 PF14599.1 gi|452206628|ref|YP_007486750.1| - 0.13 12.1 1.7 0.15 11.8 1.2 1.2 1 0 0 1 1 1 0 Zinc-ribbon NOB1_Zn_bind PF08772.6 gi|452206628|ref|YP_007486750.1| - 0.13 12.1 3.2 0.13 12.0 2.2 1.1 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like DUF35_N PF12172.3 gi|452206628|ref|YP_007486750.1| - 0.2 11.6 1.5 0.31 11.0 1.0 1.3 1 0 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Zn_Tnp_IS91 PF14319.1 gi|452206628|ref|YP_007486750.1| - 0.26 10.7 4.1 0.29 10.6 2.8 1.1 1 0 0 1 1 1 0 Transposase zinc-binding domain GCC2_GCC3 PF07699.8 gi|452206628|ref|YP_007486750.1| - 0.28 10.7 4.7 0.49 10.0 3.3 1.5 1 1 0 1 1 1 0 GCC2 and GCC3 FYVE_2 PF02318.11 gi|452206628|ref|YP_007486750.1| - 0.3 10.9 3.7 0.35 10.7 2.6 1.1 1 0 0 1 1 1 0 FYVE-type zinc finger DNA_RNApol_7kD PF03604.8 gi|452206628|ref|YP_007486750.1| - 0.4 10.1 4.6 1.1 8.7 0.3 2.2 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zf-C3HC4 PF00097.20 gi|452206628|ref|YP_007486750.1| - 0.52 10.0 3.8 0.66 9.6 2.6 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) zinc_ribbon_2 PF13240.1 gi|452206628|ref|YP_007486750.1| - 1 8.9 5.6 2.6 7.6 0.3 2.1 1 1 1 2 2 2 0 zinc-ribbon domain zf-piccolo PF05715.8 gi|452206628|ref|YP_007486750.1| - 1.2 9.1 3.6 4.3 7.4 2.5 1.8 1 1 0 1 1 1 0 Piccolo Zn-finger RNA_POL_M_15KD PF02150.11 gi|452206628|ref|YP_007486750.1| - 3.2 7.5 5.3 4.3 7.1 0.4 2.1 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit zf-C2H2_3 PF13878.1 gi|452206628|ref|YP_007486750.1| - 3.8 7.1 8.7 7.5 6.2 1.0 2.3 1 1 1 2 2 2 0 zinc-finger of acetyl-transferase ESCO LSM PF01423.17 gi|452206629|ref|YP_007486751.1| - 2.1e-12 46.3 0.2 3e-12 45.9 0.1 1.2 1 0 0 1 1 1 1 LSM domain SM-ATX PF14438.1 gi|452206629|ref|YP_007486751.1| - 0.00019 21.2 0.0 0.00029 20.6 0.0 1.4 1 1 1 2 2 2 1 Ataxin 2 SM domain DUF2642 PF10842.3 gi|452206629|ref|YP_007486751.1| - 0.038 13.4 0.0 0.062 12.7 0.0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2642) PhnA PF03831.9 gi|452206629|ref|YP_007486751.1| - 0.091 12.1 0.2 0.22 10.9 0.1 1.7 1 1 1 2 2 2 0 PhnA protein Peptidase_M42 PF05343.9 gi|452206630|ref|YP_007486752.1| - 3.2e-80 269.0 1.2 3.7e-80 268.8 0.8 1.0 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.23 gi|452206630|ref|YP_007486752.1| - 5.2e-14 52.1 0.6 7.2e-14 51.7 0.4 1.2 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M18 PF02127.10 gi|452206630|ref|YP_007486752.1| - 4.1e-07 28.8 0.1 0.00046 18.7 0.1 2.3 2 1 0 3 3 3 2 Aminopeptidase I zinc metalloprotease (M18) BPL_C PF02237.12 gi|452206630|ref|YP_007486752.1| - 0.14 11.9 1.5 9.5 6.0 0.2 3.2 3 0 0 3 3 3 0 Biotin protein ligase C terminal domain Transgly_assoc PF04226.8 gi|452206631|ref|YP_007486753.1| - 0.049 13.6 0.1 0.07 13.2 0.0 1.3 1 0 0 1 1 1 0 Transglycosylase associated protein RIO1 PF01163.17 gi|452206632|ref|YP_007486754.1| - 2.3e-45 154.2 0.1 3e-45 153.9 0.1 1.1 1 0 0 1 1 1 1 RIO1 family Rio2_N PF09202.6 gi|452206632|ref|YP_007486754.1| - 8.5e-28 96.2 0.0 1.5e-27 95.5 0.0 1.4 1 0 0 1 1 1 1 Rio2, N-terminal APH PF01636.18 gi|452206632|ref|YP_007486754.1| - 0.00034 20.4 2.9 0.44 10.2 0.0 2.5 1 1 1 2 2 2 2 Phosphotransferase enzyme family Pkinase PF00069.20 gi|452206632|ref|YP_007486754.1| - 0.027 13.5 0.0 0.043 12.9 0.0 1.3 1 0 0 1 1 1 0 Protein kinase domain Antitoxin-MazE PF04014.13 gi|452206633|ref|YP_007486755.1| - 3.3e-09 36.2 0.3 5e-09 35.6 0.2 1.2 1 0 0 1 1 1 1 Antidote-toxin recognition MazE PIN PF01850.16 gi|452206634|ref|YP_007486756.1| - 2.5e-10 40.7 0.4 2.8e-10 40.5 0.3 1.0 1 0 0 1 1 1 1 PIN domain FlpD PF02662.11 gi|452206634|ref|YP_007486756.1| - 0.053 13.2 0.0 0.088 12.5 0.0 1.4 1 0 0 1 1 1 0 Methyl-viologen-reducing hydrogenase, delta subunit Ribosomal_L15e PF00827.12 gi|452206635|ref|YP_007486757.1| - 2.8e-83 278.1 10.2 3.3e-83 277.9 7.1 1.0 1 0 0 1 1 1 1 Ribosomal L15 Peptidase_M50 PF02163.17 gi|452206636|ref|YP_007486758.1| - 8.8e-23 80.2 14.0 4.3e-16 58.4 4.9 2.4 1 1 1 2 2 2 2 Peptidase family M50 CBS PF00571.23 gi|452206636|ref|YP_007486758.1| - 4.5e-20 71.1 2.0 1e-09 38.0 0.5 2.4 2 0 0 2 2 2 2 CBS domain Peptidase_M50B PF13398.1 gi|452206636|ref|YP_007486758.1| - 7.4e-05 22.2 4.3 7.4e-05 22.2 3.0 2.2 1 1 0 2 2 2 1 Peptidase M50B-like CMD PF02627.15 gi|452206639|ref|YP_007486761.1| - 1.8e-12 46.8 0.3 8.9e-12 44.6 0.1 2.0 1 1 1 2 2 2 1 Carboxymuconolactone decarboxylase family TauE PF01925.14 gi|452206640|ref|YP_007486762.1| - 2.2e-34 119.0 26.7 2.2e-34 119.0 18.5 2.1 1 1 1 2 2 2 1 Sulfite exporter TauE/SafE MerC PF03203.9 gi|452206640|ref|YP_007486762.1| - 2.7 8.3 20.3 0.93 9.8 0.5 3.7 3 1 0 3 3 3 0 MerC mercury resistance protein zinc_ribbon_2 PF13240.1 gi|452206641|ref|YP_007486763.1| - 0.0029 17.0 0.0 0.012 15.1 0.0 1.9 1 1 0 1 1 1 1 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|452206641|ref|YP_007486763.1| - 0.005 15.9 1.9 1.5 8.1 0.1 2.2 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.2 gi|452206641|ref|YP_007486763.1| - 0.013 15.3 1.8 0.06 13.1 1.3 1.9 1 1 0 1 1 1 0 Double zinc ribbon zf-NADH-PPase PF09297.6 gi|452206641|ref|YP_007486763.1| - 0.035 13.6 1.8 0.98 8.9 0.1 2.7 3 0 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain Lar_restr_allev PF14354.1 gi|452206641|ref|YP_007486763.1| - 0.04 14.2 1.9 0.17 12.2 1.3 1.9 1 1 0 1 1 1 0 Restriction alleviation protein Lar zf-HYPF PF07503.7 gi|452206641|ref|YP_007486763.1| - 0.23 10.9 2.4 1.1 8.7 0.2 2.3 2 0 0 2 2 2 0 HypF finger OrfB_Zn_ribbon PF07282.6 gi|452206641|ref|YP_007486763.1| - 0.53 9.9 3.1 0.96 9.1 0.2 2.1 1 1 1 2 2 2 0 Putative transposase DNA-binding domain UPF0547 PF10571.4 gi|452206641|ref|YP_007486763.1| - 0.74 9.5 5.7 13 5.5 3.9 2.2 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 zf-dskA_traR PF01258.12 gi|452206641|ref|YP_007486763.1| - 0.94 9.2 10.2 5.6 6.8 1.1 3.2 2 2 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger PhnA_Zn_Ribbon PF08274.7 gi|452206641|ref|YP_007486763.1| - 2.8 7.8 5.5 18 5.2 0.9 2.2 2 0 0 2 2 2 0 PhnA Zinc-Ribbon DUF2201_N PF13203.1 gi|452206642|ref|YP_007486764.1| - 0.0077 15.4 0.9 0.66 9.0 0.2 2.0 2 0 0 2 2 2 2 Putative metallopeptidase domain adh_short PF00106.20 gi|452206643|ref|YP_007486765.1| - 2.4e-22 79.6 5.0 3e-22 79.3 3.5 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|452206643|ref|YP_007486765.1| - 7.7e-10 38.9 0.1 9.9e-10 38.5 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|452206643|ref|YP_007486765.1| - 3.5e-07 30.0 3.4 6.7e-07 29.1 2.4 1.4 1 1 0 1 1 1 1 KR domain Eno-Rase_NADH_b PF12242.3 gi|452206643|ref|YP_007486765.1| - 0.0017 18.0 0.3 0.0038 16.9 0.2 1.6 1 0 0 1 1 1 1 NAD(P)H binding domain of trans-2-enoyl-CoA reductase Epimerase PF01370.16 gi|452206643|ref|YP_007486765.1| - 0.0017 17.8 0.4 0.0025 17.2 0.2 1.3 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family HHH_5 PF14520.1 gi|452206643|ref|YP_007486765.1| - 0.0099 16.0 0.2 0.051 13.7 0.2 2.1 1 1 0 1 1 1 1 Helix-hairpin-helix domain Patatin PF01734.17 gi|452206644|ref|YP_007486766.1| - 2.1e-16 60.4 3.3 4.1e-15 56.2 2.3 2.1 1 1 0 1 1 1 1 Patatin-like phospholipase Pyr_redox_2 PF07992.9 gi|452206646|ref|YP_007486768.1| - 2.2e-32 112.5 0.8 3.2e-32 112.0 0.6 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|452206646|ref|YP_007486768.1| - 4.1e-27 94.3 0.3 7.8e-27 93.4 0.2 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.22 gi|452206646|ref|YP_007486768.1| - 1.1e-13 51.4 5.7 2.8e-12 46.8 0.2 2.9 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|452206646|ref|YP_007486768.1| - 7.3e-08 32.7 0.0 1.8e-05 24.9 0.0 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|452206646|ref|YP_007486768.1| - 7.8e-08 31.5 1.3 1.9e-07 30.2 0.9 1.6 1 1 0 1 1 1 1 Glucose inhibited division protein A FAD_oxidored PF12831.2 gi|452206646|ref|YP_007486768.1| - 9.8e-05 21.5 3.2 0.00028 20.0 0.6 2.3 2 0 0 2 2 2 1 FAD dependent oxidoreductase 3HCDH_N PF02737.13 gi|452206646|ref|YP_007486768.1| - 0.0028 17.3 2.9 0.85 9.2 0.1 2.4 2 0 0 2 2 2 2 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain K_oxygenase PF13434.1 gi|452206646|ref|YP_007486768.1| - 0.0094 14.8 0.0 0.16 10.8 0.0 2.1 1 1 1 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) DAO PF01266.19 gi|452206646|ref|YP_007486768.1| - 1.7 7.4 10.4 0.13 11.1 0.2 3.3 3 1 1 4 4 4 0 FAD dependent oxidoreductase HTH_IclR PF09339.5 gi|452206647|ref|YP_007486769.1| - 1.1e-09 37.6 0.1 3.3e-09 36.1 0.0 1.8 2 0 0 2 2 2 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|452206647|ref|YP_007486769.1| - 2.5e-08 33.4 0.0 6.2e-08 32.1 0.0 1.7 2 0 0 2 2 1 1 MarR family TrmB PF01978.14 gi|452206647|ref|YP_007486769.1| - 2.3e-07 30.3 0.0 3.4e-07 29.8 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.15 gi|452206647|ref|YP_007486769.1| - 1.6e-05 24.5 0.0 2.5e-05 23.8 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR PF01047.17 gi|452206647|ref|YP_007486769.1| - 1.9e-05 24.3 0.0 3.3e-05 23.4 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|452206647|ref|YP_007486769.1| - 5.3e-05 22.5 0.0 9.7e-05 21.6 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|452206647|ref|YP_007486769.1| - 7.8e-05 22.4 0.0 0.00015 21.4 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|452206647|ref|YP_007486769.1| - 0.0012 18.6 0.0 0.0019 17.9 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain GntR PF00392.16 gi|452206647|ref|YP_007486769.1| - 0.0022 17.3 0.0 0.0041 16.5 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family TFIIE_alpha PF02002.12 gi|452206647|ref|YP_007486769.1| - 0.0028 17.1 0.0 0.0042 16.5 0.0 1.2 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_36 PF13730.1 gi|452206647|ref|YP_007486769.1| - 0.0034 17.4 0.0 0.0056 16.7 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|452206647|ref|YP_007486769.1| - 0.016 14.8 0.0 0.025 14.2 0.0 1.2 1 0 0 1 1 1 0 HTH domain HTH_27 PF13463.1 gi|452206647|ref|YP_007486769.1| - 0.016 15.4 0.0 0.061 13.6 0.0 1.9 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_31 PF13560.1 gi|452206647|ref|YP_007486769.1| - 0.02 15.0 0.0 0.093 12.9 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain NUMOD1 PF07453.8 gi|452206647|ref|YP_007486769.1| - 0.025 14.3 0.0 0.1 12.4 0.0 2.0 2 1 1 3 3 3 0 NUMOD1 domain HTH_17 PF12728.2 gi|452206647|ref|YP_007486769.1| - 0.043 14.0 0.0 0.083 13.1 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_29 PF13551.1 gi|452206647|ref|YP_007486769.1| - 0.06 13.4 0.0 0.086 12.9 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn helix HTH_DeoR PF08220.7 gi|452206647|ref|YP_007486769.1| - 0.062 12.8 0.0 0.11 12.0 0.0 1.4 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain Fe_dep_repress PF01325.14 gi|452206647|ref|YP_007486769.1| - 0.071 13.0 0.1 0.5 10.3 0.0 2.3 3 0 0 3 3 3 0 Iron dependent repressor, N-terminal DNA binding domain HTH_23 PF13384.1 gi|452206647|ref|YP_007486769.1| - 0.075 12.7 0.0 0.14 11.8 0.0 1.3 1 0 0 1 1 1 0 Homeodomain-like domain HTH_38 PF13936.1 gi|452206647|ref|YP_007486769.1| - 0.096 12.2 0.0 0.19 11.2 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain FaeA PF04703.7 gi|452206647|ref|YP_007486769.1| - 0.13 12.3 0.0 0.23 11.6 0.0 1.3 1 0 0 1 1 1 0 FaeA-like protein HTH_28 PF13518.1 gi|452206647|ref|YP_007486769.1| - 0.15 12.1 0.0 0.27 11.2 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_3 PF01381.17 gi|452206647|ref|YP_007486769.1| - 0.15 11.9 0.0 0.34 10.7 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix HTH_27 PF13463.1 gi|452206648|ref|YP_007486770.1| - 0.0013 18.9 1.2 0.0019 18.5 0.8 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain NapD PF03927.8 gi|452206648|ref|YP_007486770.1| - 0.0094 15.7 0.0 0.022 14.6 0.0 1.7 1 1 0 2 2 2 1 NapD protein TrkA_C PF02080.16 gi|452206649|ref|YP_007486771.1| - 8.4e-29 98.9 0.7 7.3e-16 57.5 0.0 2.8 3 0 0 3 3 3 2 TrkA-C domain PhoU PF01895.14 gi|452206649|ref|YP_007486771.1| - 7.4e-17 61.5 6.3 1.1e-07 32.1 1.4 2.5 2 0 0 2 2 2 2 PhoU domain PhoU_div PF01865.11 gi|452206649|ref|YP_007486771.1| - 0.00035 19.8 0.4 0.23 10.6 0.0 2.8 2 1 1 3 3 3 2 Protein of unknown function DUF47 MgtE PF01769.11 gi|452206650|ref|YP_007486772.1| - 1.6e-20 73.7 10.2 1.6e-20 73.7 7.1 1.7 2 0 0 2 2 2 1 Divalent cation transporter Flp_Fap PF04964.9 gi|452206650|ref|YP_007486772.1| - 0.12 11.9 0.0 0.12 11.9 0.0 3.0 3 0 0 3 3 3 0 Flp/Fap pilin component DUF1129 PF06570.6 gi|452206650|ref|YP_007486772.1| - 0.71 9.1 5.5 0.67 9.2 3.1 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1129) MgtE PF01769.11 gi|452206651|ref|YP_007486773.1| - 3.3e-18 66.2 4.1 4.9e-18 65.7 2.8 1.3 1 0 0 1 1 1 1 Divalent cation transporter SUR7 PF06687.7 gi|452206651|ref|YP_007486773.1| - 2.9 7.3 7.2 10 5.6 5.0 1.9 1 1 0 1 1 1 0 SUR7/PalI family HEM4 PF02602.10 gi|452206652|ref|YP_007486774.1| - 0.06 12.5 0.0 0.089 12.0 0.0 1.2 1 0 0 1 1 1 0 Uroporphyrinogen-III synthase HemD MutS_V PF00488.16 gi|452206653|ref|YP_007486775.1| - 1.2e-89 299.7 0.0 1.7e-89 299.2 0.0 1.2 1 0 0 1 1 1 1 MutS domain V MutS_III PF05192.13 gi|452206653|ref|YP_007486775.1| - 1.2e-43 149.2 1.4 2.5e-43 148.2 0.9 1.5 1 0 0 1 1 1 1 MutS domain III MutS_I PF01624.15 gi|452206653|ref|YP_007486775.1| - 1.8e-36 124.6 0.0 4.3e-36 123.3 0.0 1.7 2 0 0 2 2 2 1 MutS domain I MutS_IV PF05190.13 gi|452206653|ref|YP_007486775.1| - 6.8e-29 99.8 0.0 1.4e-28 98.8 0.0 1.6 1 0 0 1 1 1 1 MutS family domain IV MutS_II PF05188.12 gi|452206653|ref|YP_007486775.1| - 7.1e-10 39.0 0.0 2.9e-09 37.1 0.0 2.1 1 0 0 1 1 1 1 MutS domain II AAA_29 PF13555.1 gi|452206653|ref|YP_007486775.1| - 0.036 13.5 0.0 0.12 11.9 0.0 1.8 2 0 0 2 2 2 0 P-loop containing region of AAA domain AAA_14 PF13173.1 gi|452206653|ref|YP_007486775.1| - 0.089 12.6 0.0 0.27 11.1 0.0 1.7 1 1 0 1 1 1 0 AAA domain DUF91 PF01939.11 gi|452206654|ref|YP_007486776.1| - 9.1e-66 221.2 0.0 1e-65 221.0 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF91 DUF1469 PF07332.6 gi|452206655|ref|YP_007486777.1| - 5.2 6.8 7.3 5.7 6.7 5.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) SSF PF00474.12 gi|452206656|ref|YP_007486778.1| - 1.9e-18 66.3 36.1 2.6e-18 65.8 25.0 1.2 1 0 0 1 1 1 1 Sodium:solute symporter family TENA_THI-4 PF03070.11 gi|452206657|ref|YP_007486779.1| - 1.2e-20 74.1 0.0 1.7e-20 73.6 0.0 1.0 1 0 0 1 1 1 1 TENA/THI-4/PQQC family Aldolase_2 PF10120.4 gi|452206658|ref|YP_007486780.1| - 2.7e-43 147.2 0.9 3.9e-43 146.7 0.6 1.2 1 0 0 1 1 1 1 Putative aldolase HTH_19 PF12844.2 gi|452206658|ref|YP_007486780.1| - 3.3e-06 27.0 0.0 3.5e-05 23.7 0.0 2.4 2 1 0 2 2 2 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|452206658|ref|YP_007486780.1| - 5.9e-06 25.7 0.0 5.2e-05 22.7 0.0 2.6 2 0 0 2 2 2 1 Homeodomain-like domain HTH_38 PF13936.1 gi|452206658|ref|YP_007486780.1| - 1e-05 24.9 0.0 2.7e-05 23.6 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.17 gi|452206658|ref|YP_007486780.1| - 1.5e-05 24.7 0.0 3.3e-05 23.6 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix Sigma70_r4 PF04545.11 gi|452206658|ref|YP_007486780.1| - 0.00015 21.0 0.0 0.00039 19.6 0.0 1.7 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_37 PF13744.1 gi|452206658|ref|YP_007486780.1| - 0.00035 20.3 0.0 0.0012 18.6 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_31 PF13560.1 gi|452206658|ref|YP_007486780.1| - 0.00065 19.8 0.3 0.00065 19.8 0.2 3.3 3 1 0 3 3 2 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|452206658|ref|YP_007486780.1| - 0.00079 19.0 0.1 0.0025 17.4 0.0 1.9 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|452206658|ref|YP_007486780.1| - 0.0016 17.8 0.0 0.0027 17.0 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|452206658|ref|YP_007486780.1| - 0.0035 17.1 0.0 0.0099 15.6 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.1 gi|452206658|ref|YP_007486780.1| - 0.0063 16.6 0.0 0.016 15.4 0.0 1.6 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain Sigma70_r4_2 PF08281.7 gi|452206658|ref|YP_007486780.1| - 0.0076 15.6 0.2 0.029 13.8 0.0 2.0 2 0 0 2 2 2 1 Sigma-70, region 4 RepB PF07506.6 gi|452206658|ref|YP_007486780.1| - 0.011 15.6 0.0 0.028 14.2 0.0 1.6 1 0 0 1 1 1 0 RepB plasmid partitioning protein GerE PF00196.14 gi|452206658|ref|YP_007486780.1| - 0.015 14.5 0.0 0.046 13.0 0.0 1.8 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family HTH_IclR PF09339.5 gi|452206658|ref|YP_007486780.1| - 0.019 14.5 0.0 0.058 12.9 0.0 1.8 1 0 0 1 1 1 0 IclR helix-turn-helix domain TetR_N PF00440.18 gi|452206658|ref|YP_007486780.1| - 0.02 14.5 0.1 0.35 10.5 0.0 2.8 3 0 0 3 3 3 0 Bacterial regulatory proteins, tetR family HTH_11 PF08279.7 gi|452206658|ref|YP_007486780.1| - 0.03 13.9 0.0 0.087 12.4 0.0 1.8 2 0 0 2 2 1 0 HTH domain KorB PF08535.5 gi|452206658|ref|YP_007486780.1| - 0.032 14.3 0.0 0.35 11.0 0.0 2.4 2 0 0 2 2 2 0 KorB domain DUF2481 PF10654.4 gi|452206658|ref|YP_007486780.1| - 0.056 13.1 0.0 0.084 12.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2481) MarR PF01047.17 gi|452206658|ref|YP_007486780.1| - 0.065 12.9 0.0 0.15 11.7 0.0 1.5 1 0 0 1 1 1 0 MarR family Phage_CI_repr PF07022.8 gi|452206658|ref|YP_007486780.1| - 0.099 12.7 0.0 0.14 12.2 0.0 1.4 1 1 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain HTH_28 PF13518.1 gi|452206658|ref|YP_007486780.1| - 0.1 12.6 3.2 0.14 12.1 0.0 2.9 4 0 0 4 4 3 0 Helix-turn-helix domain DDE_Tnp_IS240 PF13610.1 gi|452206659|ref|YP_007486781.1| - 8.1e-17 61.4 0.3 1.1e-16 61.0 0.2 1.1 1 0 0 1 1 1 1 DDE domain DDE_Tnp_IS66 PF03050.9 gi|452206659|ref|YP_007486781.1| - 7.7e-05 22.0 0.1 0.00021 20.6 0.0 1.7 1 1 0 1 1 1 1 Transposase IS66 family rve PF00665.21 gi|452206659|ref|YP_007486781.1| - 0.00036 20.6 0.2 0.00059 19.9 0.2 1.4 1 0 0 1 1 1 1 Integrase core domain DDE_3 PF13358.1 gi|452206659|ref|YP_007486781.1| - 0.019 14.7 0.0 0.042 13.5 0.0 1.7 1 1 0 1 1 1 0 DDE superfamily endonuclease HTH_28 PF13518.1 gi|452206659|ref|YP_007486781.1| - 0.026 14.5 0.0 1.1 9.3 0.0 2.5 2 0 0 2 2 2 0 Helix-turn-helix domain MarR_2 PF12802.2 gi|452206660|ref|YP_007486782.1| - 0.00022 20.8 0.0 0.00047 19.7 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|452206660|ref|YP_007486782.1| - 0.00044 19.9 0.4 0.0029 17.3 0.0 2.4 3 0 0 3 3 3 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|452206660|ref|YP_007486782.1| - 0.00056 19.5 0.0 0.00099 18.7 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.5 gi|452206660|ref|YP_007486782.1| - 0.0007 19.1 0.0 0.0013 18.2 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_27 PF13463.1 gi|452206660|ref|YP_007486782.1| - 0.0013 18.9 0.0 0.028 14.7 0.0 2.5 3 0 0 3 3 2 1 Winged helix DNA-binding domain GntR PF00392.16 gi|452206660|ref|YP_007486782.1| - 0.0013 18.0 0.0 0.0027 17.0 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_Crp_2 PF13545.1 gi|452206660|ref|YP_007486782.1| - 0.0049 16.6 0.0 0.01 15.6 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain TrmB PF01978.14 gi|452206660|ref|YP_007486782.1| - 0.0057 16.3 0.0 0.012 15.2 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|452206660|ref|YP_007486782.1| - 0.017 14.5 0.0 0.025 13.9 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Crp PF00325.15 gi|452206660|ref|YP_007486782.1| - 0.017 14.5 0.1 0.034 13.6 0.1 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, crp family Trp_repressor PF01371.14 gi|452206660|ref|YP_007486782.1| - 0.023 14.5 0.0 0.049 13.5 0.0 1.5 1 0 0 1 1 1 0 Trp repressor protein CUE PF02845.11 gi|452206660|ref|YP_007486782.1| - 0.025 14.0 0.1 0.052 13.0 0.1 1.5 1 0 0 1 1 1 0 CUE domain HTH_45 PF14947.1 gi|452206660|ref|YP_007486782.1| - 0.048 13.4 0.0 0.08 12.7 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix RepL PF05732.6 gi|452206660|ref|YP_007486782.1| - 0.09 11.9 0.0 0.15 11.3 0.0 1.2 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) HTH_11 PF08279.7 gi|452206660|ref|YP_007486782.1| - 0.12 12.0 0.1 0.21 11.2 0.1 1.4 1 0 0 1 1 1 0 HTH domain HTH_26 PF13443.1 gi|452206660|ref|YP_007486782.1| - 0.16 12.2 0.1 0.32 11.2 0.0 1.4 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain Herpes_LMP1 PF05297.6 gi|452206661|ref|YP_007486783.1| - 0.7 8.7 7.4 0.82 8.5 5.1 1.1 1 0 0 1 1 1 0 Herpesvirus latent membrane protein 1 (LMP1) DUF4013 PF13197.1 gi|452206662|ref|YP_007486784.1| - 9.7e-26 90.0 23.9 9.7e-26 90.0 16.6 2.5 2 1 1 3 3 3 1 Protein of unknown function (DUF4013) zf-ribbon_3 PF13248.1 gi|452206662|ref|YP_007486784.1| - 2.7e-06 26.3 4.0 5.2e-06 25.4 2.7 1.5 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|452206662|ref|YP_007486784.1| - 7.1e-06 25.3 2.4 1.3e-05 24.5 1.7 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|452206662|ref|YP_007486784.1| - 2.3e-05 24.0 0.9 4.2e-05 23.2 0.7 1.3 1 0 0 1 1 1 1 Double zinc ribbon UPF0547 PF10571.4 gi|452206662|ref|YP_007486784.1| - 3.1e-05 23.5 2.4 5.6e-05 22.7 1.7 1.4 1 0 0 1 1 1 1 Uncharacterised protein family UPF0547 Prok-RING_1 PF14446.1 gi|452206662|ref|YP_007486784.1| - 0.0041 16.8 1.2 0.0066 16.1 0.8 1.2 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 GFA PF04828.9 gi|452206662|ref|YP_007486784.1| - 0.29 11.1 1.7 2.4 8.1 1.2 2.2 1 1 0 1 1 1 0 Glutathione-dependent formaldehyde-activating enzyme zf-IS66 PF13005.2 gi|452206662|ref|YP_007486784.1| - 0.79 9.7 4.3 2.5 8.1 0.2 2.3 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 Nudix_N_2 PF14803.1 gi|452206662|ref|YP_007486784.1| - 0.87 9.3 3.0 4.2 7.1 0.1 2.4 2 0 0 2 2 2 0 Nudix N-terminal zf-ribbon_3 PF13248.1 gi|452206663|ref|YP_007486785.1| - 1.1e-05 24.5 1.1 1.7e-05 23.8 0.7 1.3 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|452206663|ref|YP_007486785.1| - 0.00011 21.5 3.5 0.00018 20.9 2.4 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|452206663|ref|YP_007486785.1| - 0.00017 21.2 1.2 0.00027 20.6 0.8 1.3 1 0 0 1 1 1 1 Double zinc ribbon TF_Zn_Ribbon PF08271.7 gi|452206663|ref|YP_007486785.1| - 0.0003 20.0 1.2 0.00051 19.3 0.8 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding Nudix_N_2 PF14803.1 gi|452206663|ref|YP_007486785.1| - 0.0064 16.1 2.3 0.85 9.3 0.1 2.5 2 0 0 2 2 2 2 Nudix N-terminal A2L_zn_ribbon PF08792.5 gi|452206663|ref|YP_007486785.1| - 0.11 11.9 1.7 2.1 7.9 0.0 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain zf-trcl PF13451.1 gi|452206663|ref|YP_007486785.1| - 0.36 10.4 2.2 0.99 9.0 0.1 2.2 1 1 1 2 2 2 0 Probable zinc-binding domain Lar_restr_allev PF14354.1 gi|452206663|ref|YP_007486785.1| - 1.3 9.3 4.8 2 8.7 0.2 2.5 1 1 1 2 2 2 0 Restriction alleviation protein Lar DDE_Tnp_IS240 PF13610.1 gi|452206664|ref|YP_007486786.1| - 5.2e-16 58.8 0.2 6.9e-16 58.4 0.1 1.2 1 0 0 1 1 1 1 DDE domain DDE_Tnp_IS66 PF03050.9 gi|452206664|ref|YP_007486786.1| - 4.4e-05 22.8 0.2 0.00012 21.3 0.1 1.8 1 1 0 1 1 1 1 Transposase IS66 family rve PF00665.21 gi|452206664|ref|YP_007486786.1| - 0.0017 18.4 0.3 0.0031 17.6 0.2 1.4 1 0 0 1 1 1 1 Integrase core domain DDE_3 PF13358.1 gi|452206664|ref|YP_007486786.1| - 0.0028 17.4 0.0 0.0088 15.7 0.0 1.7 1 1 0 1 1 1 1 DDE superfamily endonuclease HTH_28 PF13518.1 gi|452206664|ref|YP_007486786.1| - 0.025 14.5 0.0 0.89 9.6 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain DDE_Tnp_1 PF01609.16 gi|452206664|ref|YP_007486786.1| - 0.081 12.4 2.5 2.3 7.7 1.7 2.2 1 1 0 1 1 1 0 Transposase DDE domain adh_short PF00106.20 gi|452206665|ref|YP_007486787.1| - 2.9e-19 69.5 2.2 3.7e-19 69.2 1.6 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|452206665|ref|YP_007486787.1| - 2.4e-08 34.0 0.0 3.4e-08 33.5 0.0 1.2 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|452206665|ref|YP_007486787.1| - 0.0056 16.3 0.2 0.011 15.3 0.1 1.4 1 1 0 1 1 1 1 KR domain Halo_GVPC PF05465.8 gi|452206665|ref|YP_007486787.1| - 0.011 15.6 0.1 0.034 14.0 0.1 1.9 1 0 0 1 1 1 0 Halobacterial gas vesicle protein C (GVPC) repeat Chorion_1 PF01723.11 gi|452206665|ref|YP_007486787.1| - 0.079 12.8 4.2 0.068 13.0 2.0 1.5 1 1 0 1 1 1 0 Chorion protein UPF0104 PF03706.8 gi|452206666|ref|YP_007486788.1| - 1.1e-37 129.9 28.5 1.4e-37 129.6 19.8 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0104) Glycos_transf_2 PF00535.21 gi|452206667|ref|YP_007486789.1| - 7.3e-15 55.0 0.0 1.1e-14 54.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|452206667|ref|YP_007486789.1| - 1.6e-09 37.9 0.0 3.8e-09 36.7 0.0 1.6 1 1 0 1 1 1 1 Glycosyltransferase like family 2 DAO PF01266.19 gi|452206668|ref|YP_007486790.1| - 1e-60 205.5 11.9 1.2e-60 205.3 8.3 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|452206668|ref|YP_007486790.1| - 0.0001 21.3 8.8 0.00014 20.8 6.1 1.2 1 0 0 1 1 1 1 FAD binding domain Pyr_redox PF00070.22 gi|452206668|ref|YP_007486790.1| - 0.00019 21.7 1.2 0.01 16.1 1.3 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|452206668|ref|YP_007486790.1| - 0.00025 20.2 7.1 0.00073 18.6 4.9 1.8 1 1 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.9 gi|452206668|ref|YP_007486790.1| - 0.00028 20.8 2.6 0.0041 17.0 1.8 2.1 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.13 gi|452206668|ref|YP_007486790.1| - 0.00088 18.9 0.4 0.0017 18.0 0.3 1.5 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox_3 PF13738.1 gi|452206668|ref|YP_007486790.1| - 0.0029 17.7 0.1 0.059 13.4 0.1 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|452206668|ref|YP_007486790.1| - 0.0052 16.7 4.2 0.024 14.6 2.8 2.2 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.9 gi|452206668|ref|YP_007486790.1| - 0.012 14.1 0.6 0.35 9.2 0.6 2.0 2 0 0 2 2 2 0 HI0933-like protein ApbA PF02558.11 gi|452206668|ref|YP_007486790.1| - 0.014 14.8 1.3 0.028 13.8 0.9 1.5 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA NAD_binding_10 PF13460.1 gi|452206668|ref|YP_007486790.1| - 0.083 12.8 6.3 0.11 12.4 1.5 2.4 2 1 0 2 2 2 0 NADH(P)-binding FAD_oxidored PF12831.2 gi|452206668|ref|YP_007486790.1| - 1.4 7.8 10.1 5.6 5.9 7.0 1.8 1 1 0 1 1 1 0 FAD dependent oxidoreductase GIDA PF01134.17 gi|452206668|ref|YP_007486790.1| - 2.5 6.8 4.3 1 8.1 1.3 1.5 2 0 0 2 2 2 0 Glucose inhibited division protein A NAD_binding_9 PF13454.1 gi|452206668|ref|YP_007486790.1| - 3.4 7.4 5.0 1.2 8.9 0.7 2.1 2 0 0 2 2 2 0 FAD-NAD(P)-binding Fer2 PF00111.22 gi|452206669|ref|YP_007486791.1| - 2.1e-15 56.2 0.3 3.4e-15 55.5 0.2 1.3 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_4 PF13510.1 gi|452206669|ref|YP_007486791.1| - 0.01 15.6 0.3 0.022 14.5 0.2 1.6 1 1 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain Fer2_3 PF13085.1 gi|452206669|ref|YP_007486791.1| - 0.1 12.4 0.1 0.12 12.1 0.1 1.4 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain OrfB_IS605 PF01385.14 gi|452206670|ref|YP_007486792.1| - 1.2e-58 198.1 0.0 1.5e-58 197.8 0.0 1.1 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|452206670|ref|YP_007486792.1| - 9.7e-18 63.5 0.7 1.9e-17 62.6 0.5 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|452206670|ref|YP_007486792.1| - 0.0073 15.6 0.1 0.015 14.5 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain Zn_Tnp_IS1595 PF12760.2 gi|452206670|ref|YP_007486792.1| - 0.037 13.8 1.0 0.11 12.3 0.7 1.8 1 0 0 1 1 1 0 Transposase zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|452206670|ref|YP_007486792.1| - 0.057 12.7 5.0 0.13 11.6 3.5 1.6 1 0 0 1 1 1 0 TFIIB zinc-binding DNA_RNApol_7kD PF03604.8 gi|452206670|ref|YP_007486792.1| - 0.21 11.0 3.2 0.47 9.9 2.2 1.6 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit Zn-ribbon_8 PF09723.5 gi|452206670|ref|YP_007486792.1| - 2.7 8.0 6.3 5.4 7.0 1.2 3.0 3 0 0 3 3 3 0 Zinc ribbon domain DNA_pol_alpha_N PF12254.3 gi|452206671|ref|YP_007486793.1| - 0.081 12.7 0.6 0.13 12.1 0.4 1.3 1 0 0 1 1 1 0 DNA polymerase alpha subunit p180 N terminal Saccharop_dh PF03435.13 gi|452206672|ref|YP_007486794.1| - 6.2e-11 41.9 0.1 1.2e-10 40.9 0.0 1.4 2 0 0 2 2 2 1 Saccharopine dehydrogenase DUF2760 PF10816.3 gi|452206672|ref|YP_007486794.1| - 0.014 14.8 0.0 0.03 13.8 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF2760) NAD_binding_10 PF13460.1 gi|452206672|ref|YP_007486794.1| - 0.088 12.8 0.0 0.42 10.5 0.0 2.2 1 1 0 1 1 1 0 NADH(P)-binding tRNA-synt_2b PF00587.20 gi|452206673|ref|YP_007486795.1| - 2.5e-38 131.3 0.0 5.3e-38 130.3 0.0 1.5 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|452206673|ref|YP_007486795.1| - 9.7e-18 63.9 0.1 2e-17 62.8 0.1 1.6 1 0 0 1 1 1 1 Anticodon binding domain tRNA_SAD PF07973.9 gi|452206673|ref|YP_007486795.1| - 8.8e-13 47.9 0.0 1.9e-12 46.8 0.0 1.5 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain TGS PF02824.16 gi|452206673|ref|YP_007486795.1| - 9.1e-12 44.6 0.4 2e-11 43.5 0.1 1.8 2 0 0 2 2 2 1 TGS domain HHA PF05321.6 gi|452206675|ref|YP_007486797.1| - 0.13 12.3 0.9 0.17 12.0 0.6 1.3 1 0 0 1 1 1 0 Haemolysin expression modulating protein cwf21 PF08312.7 gi|452206675|ref|YP_007486797.1| - 5 7.0 6.7 6.8 6.6 4.6 1.1 1 0 0 1 1 1 0 cwf21 domain KaiC PF06745.8 gi|452206676|ref|YP_007486798.1| - 1.4e-51 174.8 0.1 1.6e-51 174.6 0.1 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|452206676|ref|YP_007486798.1| - 1e-07 31.5 0.0 1.6e-07 30.9 0.0 1.3 1 0 0 1 1 1 1 AAA domain DnaB_C PF03796.10 gi|452206676|ref|YP_007486798.1| - 0.00028 19.8 0.2 0.061 12.1 0.0 2.2 2 0 0 2 2 2 2 DnaB-like helicase C terminal domain AAA_24 PF13479.1 gi|452206676|ref|YP_007486798.1| - 0.00029 20.4 0.0 0.00044 19.8 0.0 1.2 1 0 0 1 1 1 1 AAA domain GvpD PF07088.6 gi|452206676|ref|YP_007486798.1| - 0.0014 17.0 1.3 0.0078 14.5 0.9 1.9 1 1 0 1 1 1 1 GvpD gas vesicle protein RecA PF00154.16 gi|452206676|ref|YP_007486798.1| - 0.0025 16.9 0.1 0.0041 16.2 0.1 1.3 1 0 0 1 1 1 1 recA bacterial DNA recombination protein MEDS PF14417.1 gi|452206676|ref|YP_007486798.1| - 0.0029 16.7 0.0 0.0052 15.8 0.0 1.4 1 0 0 1 1 1 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain IstB_IS21 PF01695.12 gi|452206676|ref|YP_007486798.1| - 0.025 14.0 0.2 0.065 12.6 0.1 1.6 1 1 1 2 2 2 0 IstB-like ATP binding protein AAA_19 PF13245.1 gi|452206676|ref|YP_007486798.1| - 0.025 14.3 0.1 0.063 13.0 0.0 1.7 1 0 0 1 1 1 0 Part of AAA domain AAA_30 PF13604.1 gi|452206676|ref|YP_007486798.1| - 0.038 13.5 0.1 0.063 12.8 0.1 1.3 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|452206676|ref|YP_007486798.1| - 0.057 13.3 0.0 0.11 12.3 0.0 1.5 1 1 0 1 1 1 0 AAA domain NAD_kinase PF01513.16 gi|452206677|ref|YP_007486799.1| - 1.2e-34 119.4 0.3 1.8e-34 118.8 0.2 1.4 1 1 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.19 gi|452206677|ref|YP_007486799.1| - 0.085 12.2 0.1 0.15 11.5 0.0 1.4 1 0 0 1 1 1 0 Diacylglycerol kinase catalytic domain GCHY-1 PF02649.9 gi|452206678|ref|YP_007486800.1| - 2.7e-87 292.5 0.6 3.1e-87 292.3 0.4 1.0 1 0 0 1 1 1 1 Type I GTP cyclohydrolase folE2 DUF4167 PF13763.1 gi|452206678|ref|YP_007486800.1| - 0.015 15.3 0.2 0.032 14.2 0.1 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4167) RAI16-like PF10257.4 gi|452206678|ref|YP_007486800.1| - 0.16 10.8 0.0 0.19 10.5 0.0 1.1 1 0 0 1 1 1 0 Retinoic acid induced 16-like protein Thioredox_DsbH PF03190.10 gi|452206679|ref|YP_007486801.1| - 8.7e-31 106.8 0.0 1.6e-30 106.0 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF255 Thioredoxin_7 PF13899.1 gi|452206679|ref|YP_007486801.1| - 9.7e-13 47.9 0.0 1.9e-12 46.9 0.0 1.5 1 0 0 1 1 1 1 Thioredoxin-like Thioredoxin_2 PF13098.1 gi|452206679|ref|YP_007486801.1| - 2.8e-08 33.9 0.0 1.1e-07 32.0 0.0 1.9 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin PF00085.15 gi|452206679|ref|YP_007486801.1| - 1.8e-07 30.7 0.0 3.4e-07 29.9 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_8 PF13905.1 gi|452206679|ref|YP_007486801.1| - 0.18 11.9 0.1 1.1 9.4 0.0 2.0 1 1 1 2 2 2 0 Thioredoxin-like SecD_SecF PF02355.11 gi|452206680|ref|YP_007486802.1| - 2.6e-12 46.3 4.9 4.4e-12 45.5 3.4 1.2 1 0 0 1 1 1 1 Protein export membrane protein Sec_GG PF07549.9 gi|452206680|ref|YP_007486802.1| - 0.029 13.6 0.0 0.094 11.9 0.0 1.9 1 0 0 1 1 1 0 SecD/SecF GG Motif MMPL PF03176.10 gi|452206680|ref|YP_007486802.1| - 0.17 10.5 12.3 0.31 9.7 8.6 1.3 1 0 0 1 1 1 0 MMPL family SecD_SecF PF02355.11 gi|452206681|ref|YP_007486803.1| - 2.6e-28 98.5 6.9 2.6e-28 98.5 4.7 1.5 2 0 0 2 2 2 1 Protein export membrane protein Sec_GG PF07549.9 gi|452206681|ref|YP_007486803.1| - 2e-05 23.5 0.0 5.2e-05 22.2 0.0 1.7 1 0 0 1 1 1 1 SecD/SecF GG Motif Glyoxalase_2 PF12681.2 gi|452206681|ref|YP_007486803.1| - 0.02 15.5 0.0 0.034 14.7 0.0 1.4 1 0 0 1 1 1 0 Glyoxalase-like domain Herpes_US9 PF06072.6 gi|452206681|ref|YP_007486803.1| - 1.9 8.3 6.7 1.5 8.7 0.1 3.1 3 1 0 3 3 3 0 Alphaherpesvirus tegument protein US9 Copper-bind PF00127.15 gi|452206682|ref|YP_007486804.1| - 6.1e-11 42.4 0.0 1.6e-10 41.1 0.0 1.7 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.1 gi|452206682|ref|YP_007486804.1| - 0.003 17.4 0.0 0.18 11.6 0.0 2.0 2 0 0 2 2 2 2 Cupredoxin-like domain TAT_signal PF10518.4 gi|452206682|ref|YP_007486804.1| - 0.04 13.9 0.8 0.092 12.7 0.5 1.7 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence CDP-OH_P_transf PF01066.16 gi|452206683|ref|YP_007486805.1| - 7.5e-08 32.6 14.4 3.5e-07 30.4 10.0 2.3 1 1 0 1 1 1 1 CDP-alcohol phosphatidyltransferase HEAT_2 PF13646.1 gi|452206684|ref|YP_007486806.1| - 5.5e-22 77.8 23.6 4.9e-12 45.9 4.3 5.1 3 1 3 6 6 6 3 HEAT repeats HEAT_PBS PF03130.11 gi|452206684|ref|YP_007486806.1| - 6e-15 54.1 20.4 0.00072 19.7 0.1 7.3 7 0 0 7 7 7 5 PBS lyase HEAT-like repeat HEAT PF02985.17 gi|452206684|ref|YP_007486806.1| - 2.8e-07 30.0 0.1 0.12 12.5 0.0 4.2 3 0 0 3 3 3 2 HEAT repeat Arm PF00514.18 gi|452206684|ref|YP_007486806.1| - 4.1e-05 23.2 0.1 0.87 9.5 0.0 4.4 3 1 1 4 4 4 1 Armadillo/beta-catenin-like repeat HEAT_EZ PF13513.1 gi|452206684|ref|YP_007486806.1| - 4.9e-05 23.6 17.7 0.0012 19.2 0.1 5.2 5 1 1 6 6 6 2 HEAT-like repeat PEPcase PF00311.12 gi|452206685|ref|YP_007486807.1| - 4e-233 775.7 0.0 5.1e-233 775.4 0.0 1.1 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxylase PEPcase_2 PF14010.1 gi|452206685|ref|YP_007486807.1| - 0.0019 16.5 0.0 0.0036 15.6 0.0 1.4 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxylase PLDc_2 PF13091.1 gi|452206686|ref|YP_007486808.1| - 4.1e-29 100.8 0.0 1.3e-14 54.0 0.0 2.3 2 0 0 2 2 2 2 PLD-like domain PLDc PF00614.17 gi|452206686|ref|YP_007486808.1| - 2.9e-06 26.8 2.8 2.9e-05 23.7 0.2 2.8 2 0 0 2 2 2 1 Phospholipase D Active site motif DHH PF01368.15 gi|452206687|ref|YP_007486809.1| - 9e-13 48.0 0.0 1.4e-12 47.4 0.0 1.3 1 0 0 1 1 1 1 DHH family tRNA_anti-codon PF01336.20 gi|452206687|ref|YP_007486809.1| - 1.2e-09 37.9 0.0 2.2e-09 37.0 0.0 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain S1 PF00575.18 gi|452206687|ref|YP_007486809.1| - 1.1e-06 28.6 2.6 2.9e-06 27.2 1.8 1.7 1 0 0 1 1 1 1 S1 RNA binding domain S1_2 PF13509.1 gi|452206687|ref|YP_007486809.1| - 0.093 12.6 0.2 0.22 11.4 0.2 1.6 1 0 0 1 1 1 0 S1 domain Prok-JAB PF14464.1 gi|452206688|ref|YP_007486810.1| - 1.1e-13 50.6 0.0 1.6e-13 50.1 0.0 1.1 1 0 0 1 1 1 1 Prokaryotic homologs of the JAB domain RadC PF04002.10 gi|452206688|ref|YP_007486810.1| - 0.05 13.2 0.1 0.078 12.6 0.1 1.4 1 1 0 1 1 1 0 RadC-like JAB domain JAB PF01398.16 gi|452206688|ref|YP_007486810.1| - 0.074 12.8 0.0 0.19 11.4 0.0 1.7 1 1 0 1 1 1 0 JAB1/Mov34/MPN/PAD-1 ubiquitin protease CTP_transf_2 PF01467.21 gi|452206689|ref|YP_007486811.1| - 3e-12 46.8 0.1 1.8e-11 44.3 0.0 2.0 1 1 0 1 1 1 1 Cytidylyltransferase FAD_syn PF06574.7 gi|452206689|ref|YP_007486811.1| - 0.0094 15.5 0.2 0.16 11.5 0.0 2.4 2 1 1 3 3 3 1 FAD synthetase Glycos_transf_1 PF00534.15 gi|452206690|ref|YP_007486812.1| - 5e-28 97.6 0.0 1.1e-27 96.5 0.0 1.5 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|452206690|ref|YP_007486812.1| - 4.6e-19 69.1 6.8 4.6e-19 69.1 4.7 2.2 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|452206690|ref|YP_007486812.1| - 2.1e-17 63.3 0.0 3.2e-17 62.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.1 gi|452206690|ref|YP_007486812.1| - 1.2e-16 61.1 0.7 3.1e-15 56.5 0.0 2.7 2 1 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|452206690|ref|YP_007486812.1| - 4.2e-06 26.9 0.0 3.4e-05 24.0 0.0 2.2 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|452206690|ref|YP_007486812.1| - 8.6e-06 25.6 0.0 2.2e-05 24.3 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferase 4-like Glycos_transf_1 PF00534.15 gi|452206691|ref|YP_007486813.1| - 2.1e-19 69.6 0.0 6.7e-19 67.9 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|452206691|ref|YP_007486813.1| - 2.6e-16 59.9 0.1 1.4e-14 54.3 0.0 2.2 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|452206691|ref|YP_007486813.1| - 8.7e-15 54.7 1.6 1.7e-14 53.8 0.6 2.0 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|452206691|ref|YP_007486813.1| - 2.5e-11 43.9 3.6 2.5e-11 43.9 2.5 2.6 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|452206691|ref|YP_007486813.1| - 1.2e-09 38.1 0.0 2.6e-09 37.0 0.0 1.6 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Amino_oxidase PF01593.19 gi|452206692|ref|YP_007486814.1| - 1e-21 77.5 3.7 2.3e-20 73.1 2.6 2.4 1 1 0 1 1 1 1 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.1 gi|452206692|ref|YP_007486814.1| - 6.8e-14 51.6 0.6 6.8e-14 51.6 0.4 2.3 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.19 gi|452206692|ref|YP_007486814.1| - 4.4e-07 29.1 0.8 8.8e-07 28.1 0.5 1.5 2 0 0 2 2 2 1 FAD binding domain DAO PF01266.19 gi|452206692|ref|YP_007486814.1| - 1.3e-05 24.3 2.3 5.7e-05 22.1 0.6 2.1 2 0 0 2 2 2 1 FAD dependent oxidoreductase Pyr_redox_3 PF13738.1 gi|452206692|ref|YP_007486814.1| - 1.5e-05 25.1 0.1 2.4e-05 24.4 0.1 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.9 gi|452206692|ref|YP_007486814.1| - 0.00011 22.1 0.1 0.00021 21.2 0.1 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|452206692|ref|YP_007486814.1| - 0.0009 19.6 0.4 0.002 18.4 0.3 1.7 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.2 gi|452206692|ref|YP_007486814.1| - 0.002 17.3 0.7 0.0028 16.8 0.5 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|452206692|ref|YP_007486814.1| - 0.0034 15.8 1.2 0.0047 15.4 0.9 1.1 1 0 0 1 1 1 1 HI0933-like protein FAD_binding_3 PF01494.14 gi|452206692|ref|YP_007486814.1| - 0.0064 15.5 1.7 0.011 14.8 1.2 1.3 1 0 0 1 1 1 1 FAD binding domain NAD_binding_9 PF13454.1 gi|452206692|ref|YP_007486814.1| - 0.028 14.2 0.1 0.064 13.0 0.0 1.6 1 0 0 1 1 1 0 FAD-NAD(P)-binding Thi4 PF01946.12 gi|452206692|ref|YP_007486814.1| - 0.03 13.4 0.8 0.03 13.4 0.6 1.5 2 0 0 2 2 2 0 Thi4 family Lycopene_cycl PF05834.7 gi|452206692|ref|YP_007486814.1| - 0.038 12.9 0.1 0.057 12.3 0.1 1.2 1 0 0 1 1 1 0 Lycopene cyclase protein GIDA PF01134.17 gi|452206692|ref|YP_007486814.1| - 0.038 12.8 0.4 0.051 12.4 0.3 1.2 1 0 0 1 1 1 0 Glucose inhibited division protein A FMO-like PF00743.14 gi|452206692|ref|YP_007486814.1| - 0.082 11.0 0.0 0.11 10.6 0.0 1.1 1 0 0 1 1 1 0 Flavin-binding monooxygenase-like 3HCDH_N PF02737.13 gi|452206692|ref|YP_007486814.1| - 0.085 12.5 0.1 0.13 11.9 0.1 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain UPF0118 PF01594.11 gi|452206693|ref|YP_007486815.1| - 7.1e-45 153.4 27.7 8.7e-45 153.1 19.2 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF20 Pyr_redox_2 PF07992.9 gi|452206695|ref|YP_007486817.1| - 1.9e-31 109.5 0.3 2.5e-31 109.1 0.2 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|452206695|ref|YP_007486817.1| - 3.5e-08 33.7 1.9 0.00018 21.8 0.0 4.0 4 0 0 4 4 4 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|452206695|ref|YP_007486817.1| - 6.1e-05 23.1 2.1 7.8e-05 22.8 0.3 1.9 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|452206695|ref|YP_007486817.1| - 0.00034 19.2 0.0 0.043 12.2 0.0 2.6 2 0 0 2 2 2 2 HI0933-like protein NAD_binding_9 PF13454.1 gi|452206695|ref|YP_007486817.1| - 0.0053 16.5 1.5 0.67 9.7 0.1 3.0 3 0 0 3 3 3 1 FAD-NAD(P)-binding K_oxygenase PF13434.1 gi|452206695|ref|YP_007486817.1| - 0.0096 14.8 0.1 0.021 13.7 0.0 1.6 2 0 0 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) Reductase_C PF14759.1 gi|452206695|ref|YP_007486817.1| - 0.043 14.0 0.0 0.19 12.0 0.0 2.1 2 0 0 2 2 2 0 Reductase C-terminal DAO PF01266.19 gi|452206695|ref|YP_007486817.1| - 0.11 11.4 8.0 2.7 6.7 0.1 3.5 4 0 0 4 4 4 0 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|452206695|ref|YP_007486817.1| - 0.2 11.6 3.9 1.5 8.9 0.0 3.6 4 0 0 4 4 4 0 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.19 gi|452206695|ref|YP_007486817.1| - 0.51 9.1 6.0 4 6.1 0.0 2.8 3 0 0 3 3 3 0 FAD binding domain GPDPase_memb PF10110.4 gi|452206697|ref|YP_007486819.1| - 8.1e-05 22.0 1.4 0.00019 20.8 1.0 1.6 1 0 0 1 1 1 1 Membrane domain of glycerophosphoryl diester phosphodiesterase GtrA PF04138.9 gi|452206700|ref|YP_007486822.1| - 8e-20 70.9 3.8 4.6e-19 68.4 3.0 1.7 1 1 0 1 1 1 1 GtrA-like protein Glycos_transf_2 PF00535.21 gi|452206701|ref|YP_007486823.1| - 1.1e-05 25.1 0.0 1.4e-05 24.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 DUF2298 PF10060.4 gi|452206702|ref|YP_007486824.1| - 3.7e-129 431.6 26.8 5.1e-129 431.1 18.6 1.2 1 0 0 1 1 1 1 Uncharacterized membrane protein (DUF2298) Pcc1 PF09341.5 gi|452206703|ref|YP_007486825.1| - 6e-12 45.4 0.1 6.6e-12 45.3 0.1 1.0 1 0 0 1 1 1 1 Transcription factor Pcc1 DNA_RNApol_7kD PF03604.8 gi|452206704|ref|YP_007486826.1| - 2.3e-10 39.7 6.3 2.8e-10 39.4 4.3 1.1 1 0 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit HypA PF01155.14 gi|452206704|ref|YP_007486826.1| - 0.00031 20.4 0.5 0.00031 20.3 0.3 1.1 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family zf-ribbon_3 PF13248.1 gi|452206704|ref|YP_007486826.1| - 0.00046 19.2 0.2 0.026 13.7 0.0 2.0 2 0 0 2 2 2 1 zinc-ribbon domain A2L_zn_ribbon PF08792.5 gi|452206704|ref|YP_007486826.1| - 0.00057 19.2 1.0 0.041 13.3 1.6 2.0 1 1 1 2 2 2 2 A2L zinc ribbon domain DUF329 PF03884.9 gi|452206704|ref|YP_007486826.1| - 0.00081 18.8 0.5 0.46 10.0 0.0 2.1 1 1 1 2 2 2 2 Domain of unknown function (DUF329) TF_Zn_Ribbon PF08271.7 gi|452206704|ref|YP_007486826.1| - 0.0024 17.1 1.1 0.0031 16.8 0.7 1.3 1 0 0 1 1 1 1 TFIIB zinc-binding Zn_Tnp_IS1595 PF12760.2 gi|452206704|ref|YP_007486826.1| - 0.0027 17.4 4.3 0.095 12.5 0.1 2.1 2 0 0 2 2 2 1 Transposase zinc-ribbon domain zf-CHCC PF10276.4 gi|452206704|ref|YP_007486826.1| - 0.0062 16.3 0.2 0.01 15.6 0.1 1.4 1 0 0 1 1 1 1 Zinc-finger domain zinc_ribbon_2 PF13240.1 gi|452206704|ref|YP_007486826.1| - 0.0098 15.3 3.8 0.075 12.5 2.6 2.0 1 1 0 1 1 1 1 zinc-ribbon domain Cys_rich_CPXG PF14255.1 gi|452206704|ref|YP_007486826.1| - 0.01 15.6 0.8 0.04 13.7 0.1 2.0 2 0 0 2 2 2 0 Cysteine-rich CPXCG DUF951 PF06107.6 gi|452206704|ref|YP_007486826.1| - 0.013 15.0 1.7 1 8.9 0.1 2.1 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF951) OrfB_Zn_ribbon PF07282.6 gi|452206704|ref|YP_007486826.1| - 0.013 15.1 0.8 0.016 14.8 0.6 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain DZR PF12773.2 gi|452206704|ref|YP_007486826.1| - 0.016 15.0 0.9 0.04 13.7 0.6 1.6 1 1 0 1 1 1 0 Double zinc ribbon zf-ISL3 PF14690.1 gi|452206704|ref|YP_007486826.1| - 0.029 14.4 1.4 0.14 12.1 0.1 2.0 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-Di19 PF05605.7 gi|452206704|ref|YP_007486826.1| - 0.04 14.0 0.2 0.67 10.1 0.0 2.0 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding Prok-RING_1 PF14446.1 gi|452206704|ref|YP_007486826.1| - 0.041 13.6 1.6 0.14 11.8 1.2 1.7 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 zf-HIT PF04438.11 gi|452206704|ref|YP_007486826.1| - 0.049 13.2 3.8 0.81 9.3 0.5 2.0 2 0 0 2 2 2 0 HIT zinc finger Sgf11 PF08209.6 gi|452206704|ref|YP_007486826.1| - 0.056 12.7 3.6 1.2 8.5 0.3 2.3 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) zf-AN1 PF01428.11 gi|452206704|ref|YP_007486826.1| - 0.068 13.0 0.9 0.16 11.8 0.7 1.6 1 1 1 2 2 2 0 AN1-like Zinc finger CpXC PF14353.1 gi|452206704|ref|YP_007486826.1| - 0.073 13.0 1.5 1.2 9.1 0.0 2.0 1 1 1 2 2 2 0 CpXC protein zinc-ribbons_6 PF07191.7 gi|452206704|ref|YP_007486826.1| - 0.076 12.8 0.4 0.11 12.3 0.3 1.3 1 1 0 1 1 1 0 zinc-ribbons zf-C2H2_4 PF13894.1 gi|452206704|ref|YP_007486826.1| - 0.092 13.1 1.2 2.2 8.8 0.0 2.1 2 0 0 2 2 2 0 C2H2-type zinc finger TFIIS_C PF01096.13 gi|452206704|ref|YP_007486826.1| - 0.099 12.2 1.8 4.6 6.9 0.1 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-TFIIB PF13453.1 gi|452206704|ref|YP_007486826.1| - 0.11 11.7 1.5 0.27 10.4 1.0 1.6 1 1 1 2 2 2 0 Transcription factor zinc-finger C1_1 PF00130.17 gi|452206704|ref|YP_007486826.1| - 0.11 12.2 0.5 0.14 11.9 0.3 1.3 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Zn_ribbon_recom PF13408.1 gi|452206704|ref|YP_007486826.1| - 0.11 12.8 1.7 1.2 9.4 0.1 2.1 2 0 0 2 2 2 0 Recombinase zinc beta ribbon domain RNHCP PF12647.2 gi|452206704|ref|YP_007486826.1| - 0.11 12.3 0.5 0.14 11.9 0.3 1.3 1 1 0 1 1 1 0 RNHCP domain Spt4 PF06093.8 gi|452206704|ref|YP_007486826.1| - 0.11 12.3 0.2 0.12 12.3 0.1 1.0 1 0 0 1 1 1 0 Spt4/RpoE2 zinc finger Lar_restr_allev PF14354.1 gi|452206704|ref|YP_007486826.1| - 0.11 12.7 0.7 0.32 11.3 0.5 1.8 1 1 0 1 1 1 0 Restriction alleviation protein Lar zinc_ribbon_4 PF13717.1 gi|452206704|ref|YP_007486826.1| - 0.14 11.8 5.6 5.5 6.7 3.9 2.2 1 1 0 1 1 1 0 zinc-ribbon domain zf-RING_3 PF14369.1 gi|452206704|ref|YP_007486826.1| - 0.17 11.9 2.0 0.28 11.2 1.4 1.4 1 0 0 1 1 1 0 zinc-finger zf-C4_Topoisom PF01396.14 gi|452206704|ref|YP_007486826.1| - 0.18 11.3 1.3 0.51 9.8 0.1 1.9 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger DUF3268 PF11672.3 gi|452206704|ref|YP_007486826.1| - 0.18 11.8 0.9 2.8 8.0 0.0 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3268) zinc_ribbon_5 PF13719.1 gi|452206704|ref|YP_007486826.1| - 0.2 11.2 6.0 8.8 6.0 4.1 2.2 1 1 0 1 1 1 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|452206704|ref|YP_007486826.1| - 0.35 10.8 5.2 3.8 7.5 3.4 2.0 1 1 1 2 2 2 0 Zinc ribbon domain Desulfoferrod_N PF06397.7 gi|452206704|ref|YP_007486826.1| - 0.58 9.5 2.5 5.2 6.5 0.1 2.1 1 1 1 2 2 2 0 Desulfoferrodoxin, N-terminal domain zf-NADH-PPase PF09297.6 gi|452206704|ref|YP_007486826.1| - 0.87 9.1 0.1 0.87 9.1 0.1 2.1 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zf-C2HC_2 PF13913.1 gi|452206704|ref|YP_007486826.1| - 1.1 9.0 5.0 6.2 6.6 0.7 2.2 2 0 0 2 2 2 0 zinc-finger of a C2HC-type zf-C2H2 PF00096.21 gi|452206704|ref|YP_007486826.1| - 1.5 9.3 4.1 8.8 6.8 0.1 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type Mu-like_Com PF10122.4 gi|452206704|ref|YP_007486826.1| - 2.7 7.0 7.0 5.4 6.1 1.0 2.1 1 1 1 2 2 2 0 Mu-like prophage protein Com UPF0547 PF10571.4 gi|452206704|ref|YP_007486826.1| - 6 6.6 7.4 0.62 9.8 1.3 1.9 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Ribosomal_L37ae PF01780.14 gi|452206705|ref|YP_007486827.1| - 3.8e-24 84.3 0.3 4.1e-24 84.2 0.2 1.0 1 0 0 1 1 1 1 Ribosomal L37ae protein family DUF2103 PF09876.4 gi|452206706|ref|YP_007486828.1| - 2.3e-44 149.3 0.5 4e-44 148.5 0.3 1.4 1 0 0 1 1 1 1 Predicted metal-binding protein (DUF2103) TruD PF01142.13 gi|452206707|ref|YP_007486829.1| - 1.2e-89 300.6 0.0 3.2e-89 299.2 0.0 1.6 1 1 0 1 1 1 1 tRNA pseudouridine synthase D (TruD) DUF2138 PF09909.4 gi|452206707|ref|YP_007486829.1| - 0.12 10.4 0.0 0.18 9.8 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2138) Oxidored_FMN PF00724.15 gi|452206708|ref|YP_007486830.1| - 2.1e-71 240.7 0.0 2.4e-71 240.5 0.0 1.0 1 0 0 1 1 1 1 NADH:flavin oxidoreductase / NADH oxidase family Band_7 PF01145.20 gi|452206708|ref|YP_007486830.1| - 0.023 14.6 0.0 0.097 12.5 0.0 1.9 1 1 0 1 1 1 0 SPFH domain / Band 7 family Dus PF01207.12 gi|452206708|ref|YP_007486830.1| - 0.04 12.7 0.0 0.45 9.3 0.0 2.0 2 0 0 2 2 2 0 Dihydrouridine synthase (Dus) PTH2 PF01981.11 gi|452206709|ref|YP_007486831.1| - 6.5e-39 132.2 0.0 7.2e-39 132.0 0.0 1.0 1 0 0 1 1 1 1 Peptidyl-tRNA hydrolase PTH2 NAD_binding_10 PF13460.1 gi|452206711|ref|YP_007486833.1| - 2.9e-17 63.2 0.2 4.3e-17 62.7 0.1 1.2 1 0 0 1 1 1 1 NADH(P)-binding Epimerase PF01370.16 gi|452206711|ref|YP_007486833.1| - 4e-14 52.6 0.0 8.8e-14 51.4 0.0 1.3 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family TrkA_N PF02254.13 gi|452206711|ref|YP_007486833.1| - 3.9e-08 33.2 0.2 7.6e-08 32.3 0.1 1.5 1 0 0 1 1 1 1 TrkA-N domain 3Beta_HSD PF01073.14 gi|452206711|ref|YP_007486833.1| - 2.6e-07 29.6 0.0 7e-07 28.2 0.0 1.6 2 0 0 2 2 2 1 3-beta hydroxysteroid dehydrogenase/isomerase family UDPG_MGDP_dh_N PF03721.9 gi|452206711|ref|YP_007486833.1| - 0.00015 21.2 0.2 0.00026 20.4 0.1 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DUF1731 PF08338.6 gi|452206711|ref|YP_007486833.1| - 0.00035 19.9 0.1 0.0035 16.7 0.0 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF1731) F420_oxidored PF03807.12 gi|452206711|ref|YP_007486833.1| - 0.0024 18.2 0.0 0.0059 17.0 0.0 1.7 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Semialdhyde_dh PF01118.19 gi|452206711|ref|YP_007486833.1| - 0.0045 17.2 0.1 0.0088 16.3 0.0 1.5 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.17 gi|452206711|ref|YP_007486833.1| - 0.013 16.0 0.1 0.023 15.1 0.1 1.5 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold adh_short PF00106.20 gi|452206711|ref|YP_007486833.1| - 0.02 14.8 0.5 0.063 13.2 0.3 2.0 1 1 0 1 1 1 0 short chain dehydrogenase Saccharop_dh PF03435.13 gi|452206711|ref|YP_007486833.1| - 0.04 12.8 0.2 0.058 12.3 0.1 1.2 1 0 0 1 1 1 0 Saccharopine dehydrogenase ApbA PF02558.11 gi|452206711|ref|YP_007486833.1| - 0.054 12.9 0.1 0.083 12.3 0.1 1.3 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA 2-Hacid_dh_C PF02826.14 gi|452206711|ref|YP_007486833.1| - 0.083 12.0 0.0 0.14 11.3 0.0 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DSBA PF01323.15 gi|452206712|ref|YP_007486834.1| - 0.024 14.1 0.0 0.043 13.3 0.0 1.4 1 0 0 1 1 1 0 DSBA-like thioredoxin domain T2SF PF00482.18 gi|452206717|ref|YP_007486839.1| - 0.0075 16.1 0.3 0.27 11.1 0.1 2.7 2 0 0 2 2 2 1 Type II secretion system (T2SS), protein F T2SE PF00437.15 gi|452206718|ref|YP_007486840.1| - 1.5e-29 102.7 0.0 2.2e-29 102.2 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein ABC_tran PF00005.22 gi|452206718|ref|YP_007486840.1| - 0.0005 20.3 0.0 0.00082 19.6 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_29 PF13555.1 gi|452206718|ref|YP_007486840.1| - 0.0013 18.2 0.1 0.0027 17.1 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|452206718|ref|YP_007486840.1| - 0.0061 16.5 0.5 0.037 14.0 0.0 2.4 2 1 0 2 2 2 1 AAA ATPase domain Zeta_toxin PF06414.7 gi|452206718|ref|YP_007486840.1| - 0.02 14.0 0.0 0.039 13.0 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin AAA_25 PF13481.1 gi|452206718|ref|YP_007486840.1| - 0.027 13.8 0.1 0.096 12.0 0.1 1.9 1 0 0 1 1 1 0 AAA domain cobW PF02492.14 gi|452206718|ref|YP_007486840.1| - 0.058 12.8 0.0 0.093 12.1 0.0 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain DUF1515 PF07439.6 gi|452206720|ref|YP_007486842.1| - 0.01 15.6 0.3 0.016 15.0 0.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1515) SlyX PF04102.7 gi|452206720|ref|YP_007486842.1| - 0.077 13.3 1.1 0.24 11.8 0.2 2.1 1 1 1 2 2 2 0 SlyX HSBP1 PF06825.7 gi|452206720|ref|YP_007486842.1| - 0.079 12.5 0.0 0.2 11.2 0.0 1.6 2 0 0 2 2 2 0 Heat shock factor binding protein 1 OrfB_Zn_ribbon PF07282.6 gi|452206721|ref|YP_007486843.1| - 8.5e-22 76.5 0.4 1.6e-21 75.7 0.2 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|452206721|ref|YP_007486843.1| - 0.0012 18.3 0.0 0.0025 17.2 0.0 1.5 1 0 0 1 1 1 1 Probable transposase Lipase_GDSL_2 PF13472.1 gi|452206721|ref|YP_007486843.1| - 0.075 13.1 0.2 0.3 11.1 0.0 1.9 2 0 0 2 2 2 0 GDSL-like Lipase/Acylhydrolase family 2_5_RNA_ligase2 PF13563.1 gi|452206721|ref|YP_007486843.1| - 0.077 12.7 0.3 3 7.5 0.0 2.6 2 1 0 2 2 2 0 2'-5' RNA ligase superfamily AA_permease_2 PF13520.1 gi|452206723|ref|YP_007486845.1| - 2.5e-47 161.4 39.8 3.1e-47 161.1 27.6 1.0 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|452206723|ref|YP_007486845.1| - 1.6e-45 155.3 38.7 2.1e-45 154.9 26.8 1.1 1 0 0 1 1 1 1 Amino acid permease Usp PF00582.21 gi|452206723|ref|YP_007486845.1| - 1.4e-07 31.7 1.5 4.3e-07 30.2 0.4 2.1 2 0 0 2 2 2 1 Universal stress protein family DPBB_1 PF03330.13 gi|452206723|ref|YP_007486845.1| - 0.16 11.9 0.0 0.61 10.1 0.0 1.9 2 0 0 2 2 2 0 Rare lipoprotein A (RlpA)-like double-psi beta-barrel Phosphodiest PF01663.17 gi|452206724|ref|YP_007486846.1| - 7.1e-51 173.6 0.0 8e-51 173.4 0.0 1.0 1 0 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase DUF2063 PF09836.4 gi|452206724|ref|YP_007486846.1| - 0.015 15.2 0.1 0.026 14.4 0.1 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2063) DDE_Tnp_IS240 PF13610.1 gi|452206726|ref|YP_007486848.1| - 8.4e-16 58.2 0.1 1.1e-15 57.7 0.1 1.2 1 0 0 1 1 1 1 DDE domain DDE_Tnp_IS66 PF03050.9 gi|452206726|ref|YP_007486848.1| - 4e-07 29.5 1.2 9.8e-07 28.2 0.8 1.6 1 1 0 1 1 1 1 Transposase IS66 family DDE_3 PF13358.1 gi|452206726|ref|YP_007486848.1| - 0.0017 18.1 0.0 0.006 16.3 0.0 1.9 1 1 0 1 1 1 1 DDE superfamily endonuclease FSA_C PF10479.4 gi|452206726|ref|YP_007486848.1| - 0.0043 15.1 0.0 0.0061 14.6 0.0 1.2 1 0 0 1 1 1 1 Fragile site-associated protein C-terminus HTH_28 PF13518.1 gi|452206726|ref|YP_007486848.1| - 0.036 14.0 0.0 0.37 10.8 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_23 PF13384.1 gi|452206726|ref|YP_007486848.1| - 0.063 12.9 0.6 3.8 7.2 0.6 2.7 2 1 0 2 2 2 0 Homeodomain-like domain Acetyltransf_11 PF13720.1 gi|452206726|ref|YP_007486848.1| - 0.14 12.4 0.0 0.31 11.2 0.0 1.5 1 0 0 1 1 1 0 Udp N-acetylglucosamine O-acyltransferase; Domain 2 Hexapep PF00132.19 gi|452206727|ref|YP_007486849.1| - 9.2e-14 50.2 1.6 2.4e-10 39.4 2.1 3.4 2 1 1 3 3 3 1 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|452206727|ref|YP_007486849.1| - 1.1e-07 31.2 0.2 1.8e-07 30.5 0.2 1.4 1 0 0 1 1 1 1 Hexapeptide repeat of succinyl-transferase BRX PF08381.6 gi|452206727|ref|YP_007486849.1| - 0.029 13.4 1.0 0.057 12.4 0.7 1.4 1 0 0 1 1 1 0 Transcription factor regulating root and shoot growth via Pin3 ABC_tran PF00005.22 gi|452206729|ref|YP_007486851.1| - 6.3e-30 104.2 0.2 9.4e-30 103.6 0.1 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|452206729|ref|YP_007486851.1| - 3e-08 33.9 0.0 0.0041 17.1 0.0 2.1 1 1 0 2 2 2 2 AAA domain DUF258 PF03193.11 gi|452206729|ref|YP_007486851.1| - 2.5e-06 26.7 0.0 4.5e-06 25.9 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_16 PF13191.1 gi|452206729|ref|YP_007486851.1| - 8.9e-06 25.8 0.3 1.5e-05 25.0 0.2 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.1 gi|452206729|ref|YP_007486851.1| - 5.2e-05 22.9 0.2 9.6e-05 22.0 0.1 1.6 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|452206729|ref|YP_007486851.1| - 0.00012 21.3 0.0 0.0015 17.8 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|452206729|ref|YP_007486851.1| - 0.00015 22.1 0.0 0.00038 20.8 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|452206729|ref|YP_007486851.1| - 0.00018 20.9 0.0 0.00035 20.0 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|452206729|ref|YP_007486851.1| - 0.0015 17.6 0.0 0.092 11.7 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain G-alpha PF00503.15 gi|452206729|ref|YP_007486851.1| - 0.0053 15.4 0.0 0.0057 15.3 0.0 1.1 1 0 0 1 1 1 1 G-protein alpha subunit AAA_22 PF13401.1 gi|452206729|ref|YP_007486851.1| - 0.0068 16.5 0.3 0.016 15.3 0.2 1.7 1 1 0 1 1 1 1 AAA domain SbcCD_C PF13558.1 gi|452206729|ref|YP_007486851.1| - 0.0085 15.9 0.2 0.27 11.1 0.2 2.4 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit MMR_HSR1 PF01926.18 gi|452206729|ref|YP_007486851.1| - 0.009 15.9 0.2 0.13 12.2 0.2 2.3 1 1 0 1 1 1 1 50S ribosome-binding GTPase GED PF02212.13 gi|452206729|ref|YP_007486851.1| - 0.055 13.3 0.3 0.25 11.2 0.2 1.9 2 0 0 2 2 2 0 Dynamin GTPase effector domain Miro PF08477.8 gi|452206729|ref|YP_007486851.1| - 0.071 13.6 0.0 0.2 12.1 0.0 1.7 1 1 0 1 1 1 0 Miro-like protein NACHT PF05729.7 gi|452206729|ref|YP_007486851.1| - 0.11 12.1 0.4 0.32 10.6 0.0 1.9 2 1 0 2 2 2 0 NACHT domain Phosphonate-bd PF12974.2 gi|452206730|ref|YP_007486852.1| - 7.4e-37 127.0 0.0 1.1e-36 126.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein NMT1 PF09084.6 gi|452206730|ref|YP_007486852.1| - 1.8e-06 27.7 0.0 3.2e-06 26.9 0.0 1.4 1 0 0 1 1 1 1 NMT1/THI5 like SBP_bac_3 PF00497.15 gi|452206730|ref|YP_007486852.1| - 0.0031 16.8 0.0 0.012 14.9 0.0 1.9 1 1 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 PhnG PF06754.7 gi|452206731|ref|YP_007486853.1| - 2.5e-13 49.8 0.4 3e-13 49.6 0.3 1.0 1 0 0 1 1 1 1 Phosphonate metabolism protein PhnG PhnI PF05861.7 gi|452206731|ref|YP_007486853.1| - 0.0014 17.2 0.0 0.0021 16.6 0.0 1.4 1 1 0 1 1 1 1 Bacterial phosphonate metabolism protein (PhnI) Asp_Glu_race PF01177.17 gi|452206731|ref|YP_007486853.1| - 0.11 12.4 0.0 0.22 11.4 0.0 1.4 1 0 0 1 1 1 0 Asp/Glu/Hydantoin racemase PhnH PF05845.7 gi|452206732|ref|YP_007486854.1| - 4e-32 111.2 0.6 4.5e-32 111.0 0.4 1.0 1 0 0 1 1 1 1 Bacterial phosphonate metabolism protein (PhnH) PhnI PF05861.7 gi|452206733|ref|YP_007486855.1| - 1e-127 425.5 0.0 1.2e-127 425.3 0.0 1.0 1 0 0 1 1 1 1 Bacterial phosphonate metabolism protein (PhnI) PhnG PF06754.7 gi|452206733|ref|YP_007486855.1| - 0.05 13.2 0.0 0.091 12.3 0.0 1.4 1 0 0 1 1 1 0 Phosphonate metabolism protein PhnG DUF2110 PF09883.4 gi|452206733|ref|YP_007486855.1| - 0.084 12.4 0.0 0.5 9.9 0.0 2.0 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2110) PhnJ PF06007.6 gi|452206734|ref|YP_007486856.1| - 7.5e-132 438.2 0.0 8.9e-132 438.0 0.0 1.0 1 0 0 1 1 1 1 Phosphonate metabolism protein PhnJ ABC_tran PF00005.22 gi|452206735|ref|YP_007486857.1| - 1.1e-24 87.2 0.0 1.5e-24 86.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|452206735|ref|YP_007486857.1| - 5.5e-12 46.2 0.0 2.7e-08 34.1 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|452206735|ref|YP_007486857.1| - 4.7e-06 26.7 0.0 0.0001 22.4 0.0 2.2 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|452206735|ref|YP_007486857.1| - 1.6e-05 24.3 1.3 0.00011 21.6 0.9 2.0 1 1 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|452206735|ref|YP_007486857.1| - 3.1e-05 23.5 0.1 0.062 12.7 0.0 2.2 2 0 0 2 2 2 2 AAA-like domain oligo_HPY PF08352.7 gi|452206735|ref|YP_007486857.1| - 0.00015 22.0 0.0 0.00025 21.3 0.0 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region DUF258 PF03193.11 gi|452206735|ref|YP_007486857.1| - 0.00029 20.0 0.0 0.00051 19.2 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_33 PF13671.1 gi|452206735|ref|YP_007486857.1| - 0.0011 18.8 0.2 0.0066 16.3 0.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|452206735|ref|YP_007486857.1| - 0.0012 18.8 0.2 0.0023 17.9 0.2 1.6 1 1 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.14 gi|452206735|ref|YP_007486857.1| - 0.0014 17.9 0.0 0.61 9.2 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_17 PF13207.1 gi|452206735|ref|YP_007486857.1| - 0.0014 19.4 0.2 0.0038 18.0 0.1 1.9 1 1 0 1 1 1 1 AAA domain SbcCD_C PF13558.1 gi|452206735|ref|YP_007486857.1| - 0.0071 16.2 0.1 0.032 14.1 0.0 2.2 1 1 1 2 2 2 1 Putative exonuclease SbcCD, C subunit AAA_29 PF13555.1 gi|452206735|ref|YP_007486857.1| - 0.01 15.3 0.0 0.02 14.4 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain CPT PF07931.7 gi|452206735|ref|YP_007486857.1| - 0.016 14.8 0.4 0.28 10.8 0.0 2.1 2 0 0 2 2 2 0 Chloramphenicol phosphotransferase-like protein AAA_23 PF13476.1 gi|452206735|ref|YP_007486857.1| - 0.022 15.0 0.0 0.026 14.8 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|452206735|ref|YP_007486857.1| - 0.029 14.6 0.0 0.1 12.9 0.0 1.9 2 0 0 2 2 2 0 AAA domain NACHT PF05729.7 gi|452206735|ref|YP_007486857.1| - 0.03 13.9 0.0 0.055 13.1 0.0 1.4 1 0 0 1 1 1 0 NACHT domain KAP_NTPase PF07693.9 gi|452206735|ref|YP_007486857.1| - 0.033 13.1 0.0 0.062 12.2 0.0 1.5 1 1 0 1 1 1 0 KAP family P-loop domain MobB PF03205.9 gi|452206735|ref|YP_007486857.1| - 0.042 13.5 0.0 0.088 12.5 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B Zeta_toxin PF06414.7 gi|452206735|ref|YP_007486857.1| - 0.13 11.3 0.1 0.32 10.0 0.0 1.7 2 0 0 2 2 2 0 Zeta toxin RNA_helicase PF00910.17 gi|452206735|ref|YP_007486857.1| - 0.17 12.0 0.0 0.3 11.2 0.0 1.4 1 0 0 1 1 1 0 RNA helicase ABC_tran PF00005.22 gi|452206736|ref|YP_007486858.1| - 9.2e-28 97.2 0.0 1.2e-27 96.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|452206736|ref|YP_007486858.1| - 1.5e-08 34.9 0.0 0.0016 18.4 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|452206736|ref|YP_007486858.1| - 3.4e-06 27.1 0.2 1.6e-05 24.9 0.1 2.0 1 1 0 1 1 1 1 AAA ATPase domain SbcCD_C PF13558.1 gi|452206736|ref|YP_007486858.1| - 2.4e-05 24.1 0.1 0.00019 21.2 0.1 2.2 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit DUF258 PF03193.11 gi|452206736|ref|YP_007486858.1| - 5.1e-05 22.5 0.0 7.7e-05 21.9 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_22 PF13401.1 gi|452206736|ref|YP_007486858.1| - 8e-05 22.7 0.0 0.0003 20.9 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|452206736|ref|YP_007486858.1| - 0.00015 21.1 0.0 0.0003 20.2 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|452206736|ref|YP_007486858.1| - 0.00026 20.2 0.0 0.036 13.3 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|452206736|ref|YP_007486858.1| - 0.00055 19.1 0.0 0.0097 14.9 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_14 PF13173.1 gi|452206736|ref|YP_007486858.1| - 0.0015 18.4 0.0 0.0027 17.5 0.0 1.5 2 0 0 2 2 1 1 AAA domain AAA_23 PF13476.1 gi|452206736|ref|YP_007486858.1| - 0.0018 18.6 0.0 0.0027 18.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|452206736|ref|YP_007486858.1| - 0.0033 16.9 0.0 0.0088 15.5 0.0 1.6 2 0 0 2 2 2 1 AAA-like domain AAA_25 PF13481.1 gi|452206736|ref|YP_007486858.1| - 0.0038 16.6 0.1 0.068 12.5 0.0 2.3 2 0 0 2 2 2 1 AAA domain IstB_IS21 PF01695.12 gi|452206736|ref|YP_007486858.1| - 0.0082 15.5 0.0 0.7 9.2 0.0 2.1 2 0 0 2 2 2 1 IstB-like ATP binding protein Sigma54_activat PF00158.21 gi|452206736|ref|YP_007486858.1| - 0.012 15.0 0.0 0.12 11.7 0.0 2.3 3 0 0 3 3 3 0 Sigma-54 interaction domain NACHT PF05729.7 gi|452206736|ref|YP_007486858.1| - 0.014 15.0 0.0 0.052 13.1 0.0 1.8 2 0 0 2 2 2 0 NACHT domain MMR_HSR1 PF01926.18 gi|452206736|ref|YP_007486858.1| - 0.015 15.2 0.0 0.028 14.3 0.0 1.6 2 0 0 2 2 1 0 50S ribosome-binding GTPase AAA_30 PF13604.1 gi|452206736|ref|YP_007486858.1| - 0.036 13.6 0.0 0.075 12.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain ABC_ATPase PF09818.4 gi|452206736|ref|YP_007486858.1| - 0.042 12.4 0.0 3.9 5.9 0.0 2.2 2 0 0 2 2 2 0 Predicted ATPase of the ABC class Zeta_toxin PF06414.7 gi|452206736|ref|YP_007486858.1| - 0.043 12.9 0.0 0.07 12.2 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin Miro PF08477.8 gi|452206736|ref|YP_007486858.1| - 0.047 14.1 0.0 0.083 13.3 0.0 1.4 1 0 0 1 1 1 0 Miro-like protein DUF2813 PF11398.3 gi|452206736|ref|YP_007486858.1| - 0.047 12.7 0.0 0.27 10.2 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2813) DUF815 PF05673.8 gi|452206736|ref|YP_007486858.1| - 0.081 11.8 0.0 0.12 11.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF815) Viral_helicase1 PF01443.13 gi|452206736|ref|YP_007486858.1| - 0.083 12.4 0.0 0.14 11.6 0.0 1.4 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase NB-ARC PF00931.17 gi|452206736|ref|YP_007486858.1| - 0.096 11.5 0.0 0.14 10.9 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain MobB PF03205.9 gi|452206736|ref|YP_007486858.1| - 0.11 12.1 0.0 0.18 11.4 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B Gtr1_RagA PF04670.7 gi|452206736|ref|YP_007486858.1| - 0.14 11.2 0.0 0.23 10.5 0.0 1.2 1 0 0 1 1 1 0 Gtr1/RagA G protein conserved region Amidohydro_4 PF13147.1 gi|452206737|ref|YP_007486859.1| - 7.1e-21 75.4 10.0 1.2e-20 74.6 6.9 1.4 1 1 0 1 1 1 1 Amidohydrolase Amidohydro_5 PF13594.1 gi|452206737|ref|YP_007486859.1| - 8.3e-12 44.7 0.4 3e-11 42.9 0.3 2.0 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|452206737|ref|YP_007486859.1| - 2.3e-09 36.9 6.6 1.2e-06 27.9 0.0 3.3 1 1 2 3 3 3 2 Amidohydrolase family Amidohydro_1 PF01979.15 gi|452206737|ref|YP_007486859.1| - 1.1e-08 35.0 1.7 1e-07 31.9 1.2 2.2 1 1 0 1 1 1 1 Amidohydrolase family DUF2529 PF10740.4 gi|452206737|ref|YP_007486859.1| - 0.22 10.9 1.0 1.3 8.4 0.1 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2529) AP_endonuc_2 PF01261.19 gi|452206738|ref|YP_007486860.1| - 3.1e-32 111.5 0.8 4.1e-32 111.1 0.5 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel B12-binding PF02310.14 gi|452206738|ref|YP_007486860.1| - 0.057 13.2 0.5 0.64 9.9 0.1 2.4 1 1 1 2 2 2 0 B12 binding domain PdxJ PF03740.8 gi|452206738|ref|YP_007486860.1| - 0.16 11.1 0.2 0.91 8.6 0.0 2.3 2 1 1 3 3 3 0 Pyridoxal phosphate biosynthesis protein PdxJ HAD_2 PF13419.1 gi|452206739|ref|YP_007486861.1| - 6.2e-14 52.6 0.0 7.4e-14 52.3 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|452206739|ref|YP_007486861.1| - 3.3e-09 36.3 0.0 5.6e-09 35.5 0.0 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.21 gi|452206739|ref|YP_007486861.1| - 2.5e-05 24.7 0.0 0.0023 18.3 0.0 2.2 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase DUF4231 PF14015.1 gi|452206740|ref|YP_007486862.1| - 0.77 9.7 3.9 1.5 8.7 0.0 2.6 1 1 2 3 3 3 0 Protein of unknown function (DUF4231) HEAT_2 PF13646.1 gi|452206741|ref|YP_007486863.1| - 0.0015 18.7 0.4 0.0037 17.5 0.3 1.6 1 0 0 1 1 1 1 HEAT repeats Pex14_N PF04695.8 gi|452206741|ref|YP_007486863.1| - 0.04 13.9 0.2 0.04 13.9 0.2 2.9 2 1 0 2 2 2 0 Peroxisomal membrane anchor protein (Pex14p) conserved region Peroxin-13_N PF04088.8 gi|452206741|ref|YP_007486863.1| - 0.12 12.2 0.1 0.25 11.2 0.0 1.4 1 0 0 1 1 1 0 Peroxin 13, N-terminal region DUF912 PF06024.7 gi|452206741|ref|YP_007486863.1| - 0.21 11.6 1.0 0.39 10.7 0.0 1.9 2 0 0 2 2 2 0 Nucleopolyhedrovirus protein of unknown function (DUF912) 7TMR-DISM_7TM PF07695.6 gi|452206741|ref|YP_007486863.1| - 2.6 7.6 11.3 1.7 8.2 5.5 2.0 1 1 1 2 2 2 0 7TM diverse intracellular signalling DUF4231 PF14015.1 gi|452206741|ref|YP_007486863.1| - 5.7 6.9 11.7 28 4.7 4.7 3.1 2 1 0 2 2 2 0 Protein of unknown function (DUF4231) Bactofilin PF04519.8 gi|452206742|ref|YP_007486864.1| - 6.6e-05 22.8 11.7 0.0015 18.5 2.0 2.4 1 1 1 2 2 2 2 Polymer-forming cytoskeletal Hexapep PF00132.19 gi|452206742|ref|YP_007486864.1| - 0.5 9.9 7.6 4.8 6.8 0.5 4.0 5 0 0 5 5 5 0 Bacterial transferase hexapeptide (six repeats) DUF3584 PF12128.3 gi|452206743|ref|YP_007486865.1| - 0.00028 18.3 3.2 0.0003 18.2 2.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) FliD_C PF07195.7 gi|452206743|ref|YP_007486865.1| - 0.00071 18.9 2.3 0.069 12.4 0.2 2.4 2 1 0 2 2 2 1 Flagellar hook-associated protein 2 C-terminus Baculo_PEP_C PF04513.7 gi|452206743|ref|YP_007486865.1| - 0.0018 18.1 2.3 1.7 8.4 0.0 3.3 2 1 1 4 4 3 1 Baculovirus polyhedron envelope protein, PEP, C terminus Snapin_Pallidin PF14712.1 gi|452206743|ref|YP_007486865.1| - 0.0022 18.2 2.0 0.89 9.8 0.0 3.5 2 1 1 3 3 3 1 Snapin/Pallidin DUF948 PF06103.6 gi|452206743|ref|YP_007486865.1| - 0.0042 16.9 4.2 1.7 8.5 0.0 3.4 2 2 1 3 3 3 1 Bacterial protein of unknown function (DUF948) IFT57 PF10498.4 gi|452206743|ref|YP_007486865.1| - 0.0072 15.1 2.4 0.0072 15.1 1.6 1.6 2 0 0 2 2 2 1 Intra-flagellar transport protein 57 KfrA_N PF11740.3 gi|452206743|ref|YP_007486865.1| - 0.014 15.8 13.2 0.92 9.9 4.9 2.7 1 1 1 2 2 2 0 Plasmid replication region DNA-binding N-term Lipoprotein_6 PF01441.14 gi|452206743|ref|YP_007486865.1| - 0.028 14.2 1.8 0.043 13.6 1.0 1.4 1 1 0 1 1 1 0 Lipoprotein Apolipoprotein PF01442.13 gi|452206743|ref|YP_007486865.1| - 0.043 13.3 13.4 0.7 9.3 9.3 2.4 1 1 0 1 1 1 0 Apolipoprotein A1/A4/E domain DUF1515 PF07439.6 gi|452206743|ref|YP_007486865.1| - 0.055 13.2 11.8 0.82 9.5 0.1 3.3 2 1 1 3 3 3 0 Protein of unknown function (DUF1515) DUF2913 PF11140.3 gi|452206743|ref|YP_007486865.1| - 0.068 12.4 1.0 8.2 5.6 0.0 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF2913) DUF3947 PF13135.1 gi|452206743|ref|YP_007486865.1| - 0.095 12.9 0.3 0.095 12.9 0.2 2.1 3 0 0 3 3 2 0 Protein of unknown function (DUF3947) Laminin_II PF06009.7 gi|452206743|ref|YP_007486865.1| - 0.17 11.6 6.1 0.87 9.3 0.8 3.0 1 1 2 3 3 3 0 Laminin Domain II Vfa1 PF08432.5 gi|452206743|ref|YP_007486865.1| - 0.17 11.8 3.5 0.28 11.2 2.4 1.3 1 0 0 1 1 1 0 AAA-ATPase Vps4-associated protein 1 YtxH PF12732.2 gi|452206743|ref|YP_007486865.1| - 0.17 12.2 8.0 2.9 8.3 0.3 3.3 2 1 0 2 2 2 0 YtxH-like protein Vps54 PF07928.7 gi|452206743|ref|YP_007486865.1| - 0.18 11.9 1.9 1.1 9.3 0.4 2.5 2 1 0 2 2 2 0 Vps54-like protein SNARE PF05739.14 gi|452206743|ref|YP_007486865.1| - 0.28 10.9 0.1 0.28 10.9 0.1 3.9 4 1 0 4 4 4 0 SNARE domain DUF972 PF06156.8 gi|452206743|ref|YP_007486865.1| - 0.34 11.2 8.8 1.1 9.6 2.7 3.1 2 2 1 3 3 3 0 Protein of unknown function (DUF972) LMP PF04778.7 gi|452206743|ref|YP_007486865.1| - 0.37 10.5 3.0 2.8 7.6 0.0 3.0 2 1 0 3 3 3 0 LMP repeated region DUF4446 PF14584.1 gi|452206743|ref|YP_007486865.1| - 0.42 10.4 8.3 1.5 8.6 0.2 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF4446) MtrG PF04210.8 gi|452206743|ref|YP_007486865.1| - 0.5 10.0 2.2 1.6 8.4 0.5 2.5 2 0 0 2 2 2 0 Tetrahydromethanopterin S-methyltransferase, subunit G DASH_Spc19 PF08287.6 gi|452206743|ref|YP_007486865.1| - 0.53 9.8 6.6 1.4 8.4 4.6 1.8 1 1 0 1 1 1 0 Spc19 ORC3_N PF07034.6 gi|452206743|ref|YP_007486865.1| - 0.62 8.9 4.1 0.25 10.2 0.7 1.7 1 1 0 1 1 1 0 Origin recognition complex (ORC) subunit 3 N-terminus Img2 PF05046.9 gi|452206743|ref|YP_007486865.1| - 0.62 10.3 2.8 1.7 8.8 1.0 2.7 2 1 0 2 2 1 0 Mitochondrial large subunit ribosomal protein (Img2) COG2 PF06148.6 gi|452206743|ref|YP_007486865.1| - 0.68 9.8 10.1 4 7.3 1.9 3.2 1 1 2 3 3 3 0 COG (conserved oligomeric Golgi) complex component, COG2 BLOC1_2 PF10046.4 gi|452206743|ref|YP_007486865.1| - 0.68 10.0 6.1 6.2 7.0 0.8 3.7 3 1 0 4 4 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Prominin PF05478.6 gi|452206743|ref|YP_007486865.1| - 0.83 7.1 3.3 3 5.2 0.8 1.6 1 1 0 1 1 1 0 Prominin Tweety PF04906.8 gi|452206743|ref|YP_007486865.1| - 0.96 7.7 3.1 2 6.7 0.3 2.0 2 0 0 2 2 2 0 Tweety DUF883 PF05957.8 gi|452206743|ref|YP_007486865.1| - 0.97 9.8 13.0 3.2 8.2 0.1 3.6 3 1 1 4 4 3 0 Bacterial protein of unknown function (DUF883) Prefoldin_2 PF01920.15 gi|452206743|ref|YP_007486865.1| - 1.4 8.7 10.2 0.75 9.5 4.4 2.6 2 1 0 2 2 2 0 Prefoldin subunit ISG65-75 PF11727.3 gi|452206743|ref|YP_007486865.1| - 3.8 6.4 8.1 8.6 5.3 2.9 2.3 1 1 1 2 2 2 0 Invariant surface glycoprotein Atg14 PF10186.4 gi|452206743|ref|YP_007486865.1| - 5.7 5.8 12.9 0.53 9.1 4.7 1.9 1 1 0 2 2 2 0 UV radiation resistance protein and autophagy-related subunit 14 Vpu PF00558.14 gi|452206743|ref|YP_007486865.1| - 6 6.4 6.9 2.1 7.9 2.0 2.3 2 0 0 2 2 2 0 Vpu protein Zn-ribbon_8 PF09723.5 gi|452206744|ref|YP_007486866.1| - 0.0011 18.8 1.0 0.0033 17.3 0.7 1.8 1 0 0 1 1 1 1 Zinc ribbon domain Atg14 PF10186.4 gi|452206744|ref|YP_007486866.1| - 0.0016 17.4 9.7 0.0016 17.4 6.7 2.7 1 1 2 3 3 3 1 UV radiation resistance protein and autophagy-related subunit 14 zf-MIZ PF02891.15 gi|452206744|ref|YP_007486866.1| - 0.0077 15.7 0.7 0.014 14.8 0.5 1.5 1 0 0 1 1 1 1 MIZ/SP-RING zinc finger DUF948 PF06103.6 gi|452206744|ref|YP_007486866.1| - 0.0079 16.0 3.3 3 7.7 0.2 3.6 2 1 2 4 4 4 1 Bacterial protein of unknown function (DUF948) Acetone_carb_G PF08882.6 gi|452206744|ref|YP_007486866.1| - 0.028 14.4 0.6 0.83 9.6 0.1 2.9 2 1 1 3 3 3 0 Acetone carboxylase gamma subunit DUF3053 PF11254.3 gi|452206744|ref|YP_007486866.1| - 0.029 13.6 1.8 0.043 13.0 0.8 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3053) C9orf72-like PF15019.1 gi|452206744|ref|YP_007486866.1| - 0.036 13.3 0.1 0.057 12.6 0.0 1.3 1 0 0 1 1 1 0 C9orf72-like protein family zf-TFIIB PF13453.1 gi|452206744|ref|YP_007486866.1| - 0.036 13.2 1.1 0.66 9.2 0.0 2.7 2 0 0 2 2 2 0 Transcription factor zinc-finger Zn_Tnp_IS1595 PF12760.2 gi|452206744|ref|YP_007486866.1| - 0.056 13.2 0.1 0.14 11.9 0.0 1.7 1 0 0 1 1 1 0 Transposase zinc-ribbon domain SDH_alpha PF03313.10 gi|452206744|ref|YP_007486866.1| - 0.1 11.6 6.8 0.13 11.2 4.3 1.4 1 1 0 1 1 1 0 Serine dehydratase alpha chain zf-4CXXC_R1 PF10497.4 gi|452206744|ref|YP_007486866.1| - 0.12 12.5 0.1 0.26 11.4 0.0 1.6 1 0 0 1 1 1 0 Zinc-finger domain of monoamine-oxidase A repressor R1 PHD PF00628.24 gi|452206744|ref|YP_007486866.1| - 0.67 9.6 4.2 16 5.2 3.5 2.2 1 1 1 2 2 2 0 PHD-finger AAA_13 PF13166.1 gi|452206744|ref|YP_007486866.1| - 2.2 6.6 18.3 0.027 12.9 4.3 2.1 1 1 1 2 2 2 0 AAA domain Hemagglutinin PF00509.13 gi|452206744|ref|YP_007486866.1| - 3 5.8 5.9 1.2 7.2 0.3 2.0 2 0 0 2 2 2 0 Haemagglutinin DUF883 PF05957.8 gi|452206744|ref|YP_007486866.1| - 3.7 8.0 22.8 4.3 7.8 7.6 3.6 3 1 2 5 5 5 0 Bacterial protein of unknown function (DUF883) Rep_fac-A_C PF08646.5 gi|452206744|ref|YP_007486866.1| - 6.4 6.4 8.3 0.42 10.3 1.1 2.4 1 1 1 2 2 2 0 Replication factor-A C terminal domain Spc7 PF08317.6 gi|452206744|ref|YP_007486866.1| - 7.4 5.1 19.2 0.078 11.6 2.9 2.1 1 1 1 2 2 2 0 Spc7 kinetochore protein DUF4238 PF14022.1 gi|452206744|ref|YP_007486866.1| - 8.6 5.5 9.8 12 5.0 6.8 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4238) DDE_Tnp_1 PF01609.16 gi|452206746|ref|YP_007486868.1| - 1.4e-11 44.3 0.8 2.7e-11 43.4 0.6 1.4 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_2 PF13586.1 gi|452206746|ref|YP_007486868.1| - 0.0045 17.1 0.4 0.076 13.2 0.0 2.4 3 0 0 3 3 3 1 Transposase DDE domain DUF1814 PF08843.6 gi|452206746|ref|YP_007486868.1| - 0.051 13.3 0.0 0.076 12.7 0.0 1.2 1 0 0 1 1 1 0 Nucleotidyl transferase of unknown function (DUF1814) DDE_Tnp_1_3 PF13612.1 gi|452206746|ref|YP_007486868.1| - 0.1 12.3 0.0 0.15 11.8 0.0 1.2 1 0 0 1 1 1 0 Transposase DDE domain 7TMR-DISM_7TM PF07695.6 gi|452206748|ref|YP_007486870.1| - 0.037 13.6 6.0 0.05 13.2 4.2 1.1 1 0 0 1 1 1 0 7TM diverse intracellular signalling DUF4293 PF14126.1 gi|452206748|ref|YP_007486870.1| - 0.22 11.4 1.9 0.3 10.9 1.3 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4293) DUF981 PF06168.6 gi|452206748|ref|YP_007486870.1| - 0.25 11.0 6.5 0.58 9.9 4.5 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF981) ABC2_membrane_4 PF12730.2 gi|452206748|ref|YP_007486870.1| - 1.3 8.1 5.7 60 2.6 3.4 1.7 1 1 0 1 1 1 0 ABC-2 family transporter protein DUF998 PF06197.8 gi|452206748|ref|YP_007486870.1| - 2.2 7.5 8.3 7.9 5.7 5.7 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF998) MadM PF03818.8 gi|452206748|ref|YP_007486870.1| - 3.3 7.3 6.1 0.81 9.3 1.3 2.0 2 1 0 2 2 2 0 Malonate/sodium symporter MadM subunit HTH_20 PF12840.2 gi|452206749|ref|YP_007486871.1| - 2e-18 65.9 1.1 3.9e-12 45.7 0.5 2.2 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_5 PF01022.15 gi|452206749|ref|YP_007486871.1| - 4.4e-15 55.0 0.0 6.7e-10 38.4 0.0 2.5 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|452206749|ref|YP_007486871.1| - 1.3e-11 43.6 0.0 6.6e-08 31.8 0.0 2.7 2 1 1 3 3 3 2 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|452206749|ref|YP_007486871.1| - 2.6e-09 36.6 0.0 5.7e-06 25.9 0.0 2.2 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|452206749|ref|YP_007486871.1| - 1.6e-08 34.1 0.4 7.3e-06 25.5 0.1 2.5 2 1 0 2 2 2 1 MarR family Penicillinase_R PF03965.11 gi|452206749|ref|YP_007486871.1| - 2e-08 34.3 0.0 0.00048 20.1 0.1 2.2 1 1 1 2 2 2 2 Penicillinase repressor HTH_27 PF13463.1 gi|452206749|ref|YP_007486871.1| - 2.1e-06 27.9 0.3 0.0001 22.5 0.1 2.4 2 0 0 2 2 2 1 Winged helix DNA-binding domain MarR PF01047.17 gi|452206749|ref|YP_007486871.1| - 3.4e-06 26.6 0.0 0.00035 20.2 0.1 2.2 2 0 0 2 2 2 1 MarR family RP-C PF03428.8 gi|452206749|ref|YP_007486871.1| - 1.3e-05 24.7 0.1 0.13 11.6 0.0 2.3 1 1 1 2 2 2 2 Replication protein C N-terminal domain HTH_AsnC-type PF13404.1 gi|452206749|ref|YP_007486871.1| - 3.1e-05 23.4 0.5 0.00083 18.8 0.1 2.4 1 1 1 2 2 2 1 AsnC-type helix-turn-helix domain HTH_34 PF13601.1 gi|452206749|ref|YP_007486871.1| - 0.00013 21.8 0.0 0.16 12.0 0.0 2.3 2 0 0 2 2 2 2 Winged helix DNA-binding domain HTH_Crp_2 PF13545.1 gi|452206749|ref|YP_007486871.1| - 0.00014 21.5 0.0 0.007 16.1 0.0 2.4 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain Fe_dep_repress PF01325.14 gi|452206749|ref|YP_007486871.1| - 0.00021 21.1 0.0 0.0013 18.6 0.0 2.0 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain DUF2513 PF10711.4 gi|452206749|ref|YP_007486871.1| - 0.00031 20.7 0.0 0.95 9.5 0.0 2.2 2 0 0 2 2 2 2 Hypothetical protein (DUF2513) HTH_IclR PF09339.5 gi|452206749|ref|YP_007486871.1| - 0.0014 18.1 0.4 0.0028 17.1 0.3 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_DeoR PF08220.7 gi|452206749|ref|YP_007486871.1| - 0.0074 15.8 0.0 0.019 14.4 0.0 1.6 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain Mrr_N PF14338.1 gi|452206749|ref|YP_007486871.1| - 0.013 15.5 0.0 4.3 7.4 0.0 2.5 2 1 0 2 2 2 0 Mrr N-terminal domain HTH_42 PF06224.7 gi|452206749|ref|YP_007486871.1| - 0.014 14.7 0.3 0.026 13.8 0.2 1.5 1 1 0 1 1 1 0 Winged helix DNA-binding domain HTH_11 PF08279.7 gi|452206749|ref|YP_007486871.1| - 0.016 14.8 0.7 0.63 9.7 0.1 2.2 2 0 0 2 2 2 0 HTH domain HTH_41 PF14502.1 gi|452206749|ref|YP_007486871.1| - 0.083 12.5 0.0 0.93 9.1 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain Rrf2 PF02082.15 gi|452206749|ref|YP_007486871.1| - 0.096 12.8 0.0 0.28 11.3 0.0 1.8 2 0 0 2 2 2 0 Transcriptional regulator DUF1707 PF08044.6 gi|452206749|ref|YP_007486871.1| - 0.097 12.4 0.6 0.47 10.2 0.1 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF1707) MerR_1 PF13411.1 gi|452206749|ref|YP_007486871.1| - 0.097 12.4 0.3 0.98 9.2 0.0 2.3 3 0 0 3 3 2 0 MerR HTH family regulatory protein Phage_rep_org_N PF09681.5 gi|452206749|ref|YP_007486871.1| - 0.11 12.0 0.0 9.3 5.8 0.0 2.2 2 0 0 2 2 2 0 N-terminal phage replisome organiser (Phage_rep_org_N) Ferric_reduct PF01794.14 gi|452206750|ref|YP_007486872.1| - 0.0023 18.0 6.9 0.0023 18.0 4.8 2.0 1 1 1 2 2 2 1 Ferric reductase like transmembrane component DUF4405 PF14358.1 gi|452206750|ref|YP_007486872.1| - 0.6 10.2 9.6 0.082 13.0 0.9 2.8 2 1 0 2 2 2 0 Domain of unknown function (DUF4405) Ni_hydr_CYTB PF01292.15 gi|452206750|ref|YP_007486872.1| - 0.64 9.3 15.4 0.37 10.1 3.6 2.2 1 1 0 2 2 2 0 Prokaryotic cytochrome b561 PepSY_TM_2 PF13703.1 gi|452206750|ref|YP_007486872.1| - 1.6 8.9 9.1 19 5.4 3.6 3.3 2 1 1 3 3 3 0 PepSY-associated TM helix PepSY_TM_1 PF13172.1 gi|452206750|ref|YP_007486872.1| - 1.7 8.5 0.0 1.7 8.5 0.0 3.3 3 0 0 3 3 3 0 PepSY-associated TM helix TSP_3 PF02412.13 gi|452206751|ref|YP_007486873.1| - 3.4e-06 26.4 3.8 8e-06 25.2 0.6 2.1 2 0 0 2 2 2 1 Thrombospondin type 3 repeat DUF2570 PF10828.3 gi|452206751|ref|YP_007486873.1| - 0.027 14.0 0.5 0.035 13.6 0.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2570) Vpu PF00558.14 gi|452206751|ref|YP_007486873.1| - 0.063 12.8 0.0 0.079 12.5 0.0 1.1 1 0 0 1 1 1 0 Vpu protein T4_tail_cap PF11091.3 gi|452206751|ref|YP_007486873.1| - 0.095 11.3 0.1 0.12 11.0 0.0 1.1 1 0 0 1 1 1 0 Tail-tube assembly protein ApbE PF02424.10 gi|452206752|ref|YP_007486874.1| - 1.1e-31 110.1 0.1 1.7e-31 109.4 0.1 1.3 1 0 0 1 1 1 1 ApbE family DUF1510 PF07423.6 gi|452206753|ref|YP_007486875.1| - 0.0012 18.3 10.8 0.0013 18.1 7.5 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1510) DUF2076 PF09849.4 gi|452206753|ref|YP_007486875.1| - 0.037 14.0 6.8 0.048 13.7 4.7 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2076) Trm56 PF01994.11 gi|452206754|ref|YP_007486876.1| - 2e-45 153.4 0.0 2.6e-45 153.0 0.0 1.1 1 0 0 1 1 1 1 tRNA ribose 2'-O-methyltransferase, aTrm56 Epimerase PF01370.16 gi|452206755|ref|YP_007486877.1| - 3.9e-42 144.3 0.0 4.6e-42 144.0 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|452206755|ref|YP_007486877.1| - 1.1e-13 50.7 0.0 1.3e-13 50.5 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_10 PF13460.1 gi|452206755|ref|YP_007486877.1| - 5.1e-11 42.8 0.0 7.5e-11 42.3 0.0 1.3 1 0 0 1 1 1 1 NADH(P)-binding 3Beta_HSD PF01073.14 gi|452206755|ref|YP_007486877.1| - 2e-10 39.8 0.0 2.7e-10 39.4 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.7 gi|452206755|ref|YP_007486877.1| - 1.3e-09 37.4 0.0 6.8e-07 28.4 0.0 2.2 1 1 0 1 1 1 1 Male sterility protein Polysacc_synt_2 PF02719.10 gi|452206755|ref|YP_007486877.1| - 1.5e-08 33.9 0.0 1.8e-07 30.3 0.0 2.4 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein TrkA_N PF02254.13 gi|452206755|ref|YP_007486877.1| - 0.0012 18.7 0.0 0.002 18.1 0.0 1.4 1 0 0 1 1 1 1 TrkA-N domain adh_short PF00106.20 gi|452206755|ref|YP_007486877.1| - 0.058 13.3 0.5 0.31 10.9 0.3 2.3 1 1 0 1 1 1 0 short chain dehydrogenase BsuPI PF12690.2 gi|452206756|ref|YP_007486878.1| - 3.9e-22 77.7 0.0 4.6e-22 77.5 0.0 1.1 1 0 0 1 1 1 1 Intracellular proteinase inhibitor CARDB PF07705.6 gi|452206756|ref|YP_007486878.1| - 0.1 12.6 0.0 0.19 11.8 0.0 1.4 1 1 0 1 1 1 0 CARDB IncA PF04156.9 gi|452206757|ref|YP_007486879.1| - 2.8 7.4 5.8 2.7 7.5 0.9 2.3 2 0 0 2 2 2 0 IncA protein DUF2797 PF10977.3 gi|452206758|ref|YP_007486880.1| - 2.1e-42 145.3 0.2 6.9e-41 140.4 0.1 2.0 1 1 0 1 1 1 1 Protein of unknown function (DUF2797) Aminotran_1_2 PF00155.16 gi|452206760|ref|YP_007486882.1| - 5.3e-64 216.4 0.0 6e-64 216.2 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|452206760|ref|YP_007486882.1| - 3.2e-05 23.2 0.0 0.00024 20.3 0.0 1.9 2 0 0 2 2 2 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.15 gi|452206760|ref|YP_007486882.1| - 7.4e-05 21.2 0.0 0.00015 20.2 0.0 1.4 2 0 0 2 2 2 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.14 gi|452206760|ref|YP_007486882.1| - 0.0072 15.1 0.1 0.013 14.2 0.0 1.4 2 0 0 2 2 2 1 Aminotransferase class-V DMRL_synthase PF00885.14 gi|452206761|ref|YP_007486883.1| - 2.8e-30 104.8 0.2 3e-30 104.7 0.1 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase Ribosomal_L11_N PF03946.9 gi|452206762|ref|YP_007486884.1| - 5.9e-20 70.4 0.2 9.2e-20 69.8 0.1 1.3 1 0 0 1 1 1 1 Ribosomal protein L11, N-terminal domain Ribosomal_L11 PF00298.14 gi|452206762|ref|YP_007486884.1| - 7.9e-19 67.5 0.0 1.2e-18 66.9 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L11, RNA binding domain F420_ligase PF01996.11 gi|452206762|ref|YP_007486884.1| - 0.059 12.4 0.1 0.079 12.0 0.1 1.1 1 0 0 1 1 1 0 F420-0:Gamma-glutamyl ligase MMR_HSR1 PF01926.18 gi|452206764|ref|YP_007486886.1| - 7e-22 77.5 0.0 1.5e-21 76.4 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|452206764|ref|YP_007486886.1| - 5.5e-14 51.7 0.1 5.6e-13 48.4 0.0 2.1 2 0 0 2 2 2 1 Ferrous iron transport protein B TGS PF02824.16 gi|452206764|ref|YP_007486886.1| - 3.6e-11 42.7 0.0 6.5e-11 41.9 0.0 1.4 1 0 0 1 1 1 1 TGS domain Dynamin_N PF00350.18 gi|452206764|ref|YP_007486886.1| - 1e-06 28.7 0.0 0.054 13.3 0.0 2.6 2 0 0 2 2 2 2 Dynamin family ArgK PF03308.11 gi|452206764|ref|YP_007486886.1| - 0.00097 17.9 0.5 0.054 12.2 0.0 3.1 2 1 1 3 3 3 1 ArgK protein GTP_EFTU PF00009.22 gi|452206764|ref|YP_007486886.1| - 0.0015 18.0 0.0 0.13 11.7 0.0 2.7 2 1 0 2 2 2 1 Elongation factor Tu GTP binding domain Miro PF08477.8 gi|452206764|ref|YP_007486886.1| - 0.0072 16.8 0.0 0.021 15.3 0.0 1.8 1 0 0 1 1 1 1 Miro-like protein ABC_tran PF00005.22 gi|452206764|ref|YP_007486886.1| - 0.0077 16.5 0.0 0.15 12.3 0.0 2.5 2 1 0 2 2 2 1 ABC transporter DUF258 PF03193.11 gi|452206764|ref|YP_007486886.1| - 0.0081 15.3 0.1 0.035 13.2 0.0 2.0 2 1 0 2 2 2 1 Protein of unknown function, DUF258 Arf PF00025.16 gi|452206764|ref|YP_007486886.1| - 0.0086 15.3 0.0 0.6 9.3 0.0 2.3 2 0 0 2 2 2 1 ADP-ribosylation factor family AAA_28 PF13521.1 gi|452206764|ref|YP_007486886.1| - 0.017 15.0 0.0 0.037 13.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain AIG1 PF04548.11 gi|452206764|ref|YP_007486886.1| - 0.022 13.8 0.0 0.058 12.5 0.0 1.7 2 0 0 2 2 2 0 AIG1 family AAA_16 PF13191.1 gi|452206764|ref|YP_007486886.1| - 0.03 14.2 0.0 0.067 13.1 0.0 1.6 1 0 0 1 1 1 0 AAA ATPase domain cobW PF02492.14 gi|452206764|ref|YP_007486886.1| - 0.034 13.5 0.1 1.7 8.0 0.0 2.4 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_18 PF13238.1 gi|452206764|ref|YP_007486886.1| - 0.044 14.0 0.3 0.17 12.2 0.2 2.3 1 1 0 1 1 1 0 AAA domain Trans_reg_C PF00486.23 gi|452206764|ref|YP_007486886.1| - 0.069 13.0 0.0 20 5.1 0.0 3.0 2 0 0 2 2 2 0 Transcriptional regulatory protein, C terminal AAA_29 PF13555.1 gi|452206764|ref|YP_007486886.1| - 0.083 12.4 0.1 0.18 11.3 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_17 PF13207.1 gi|452206764|ref|YP_007486886.1| - 0.084 13.7 0.4 0.35 11.7 0.3 2.5 1 1 0 1 1 1 0 AAA domain MobB PF03205.9 gi|452206764|ref|YP_007486886.1| - 0.1 12.2 0.0 0.24 11.0 0.0 1.6 1 1 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B HGTP_anticodon PF03129.15 gi|452206764|ref|YP_007486886.1| - 0.12 12.3 0.6 0.43 10.5 0.4 2.0 2 0 0 2 2 2 0 Anticodon binding domain DUF2391 PF09622.5 gi|452206765|ref|YP_007486887.1| - 4e-06 26.1 0.2 4.8e-06 25.9 0.2 1.1 1 0 0 1 1 1 1 Putative integral membrane protein (DUF2391) DUF973 PF06157.6 gi|452206765|ref|YP_007486887.1| - 0.00052 19.0 0.3 0.00066 18.7 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF973) Exosortase_EpsH PF09721.5 gi|452206766|ref|YP_007486888.1| - 9.4e-43 146.3 24.1 1.2e-42 146.0 16.7 1.1 1 0 0 1 1 1 1 Transmembrane exosortase (Exosortase_EpsH) UCR_Fe-S_N PF10399.4 gi|452206767|ref|YP_007486889.1| - 0.21 10.7 2.4 0.51 9.5 1.7 1.6 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal TAT_signal PF10518.4 gi|452206767|ref|YP_007486889.1| - 0.32 11.1 5.1 1.1 9.4 3.5 2.0 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence TP_methylase PF00590.15 gi|452206768|ref|YP_007486890.1| - 9.1e-15 54.9 1.9 1.4e-14 54.2 1.3 1.4 1 1 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases TFIIB PF00382.14 gi|452206769|ref|YP_007486891.1| - 1e-40 137.3 0.1 2.5e-19 68.8 0.0 2.2 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|452206769|ref|YP_007486891.1| - 2.2e-16 58.9 3.7 6.1e-16 57.4 2.7 1.7 2 0 0 2 2 2 1 TFIIB zinc-binding RRN7 PF11781.3 gi|452206769|ref|YP_007486891.1| - 0.00013 21.3 1.0 0.00025 20.4 0.7 1.4 1 0 0 1 1 1 1 RNA polymerase I-specific transcription initiation factor Rrn7 zf-ribbon_3 PF13248.1 gi|452206769|ref|YP_007486891.1| - 0.003 16.6 0.3 0.0057 15.8 0.2 1.5 1 0 0 1 1 1 1 zinc-ribbon domain TrmB PF01978.14 gi|452206769|ref|YP_007486891.1| - 0.0038 16.9 0.4 0.013 15.1 0.1 2.0 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB OrfB_Zn_ribbon PF07282.6 gi|452206769|ref|YP_007486891.1| - 0.005 16.4 1.1 0.0095 15.5 0.8 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_24 PF13412.1 gi|452206769|ref|YP_007486891.1| - 0.0079 15.5 0.0 0.019 14.3 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding DZR PF12773.2 gi|452206769|ref|YP_007486891.1| - 0.014 15.2 1.2 0.03 14.1 0.9 1.5 1 0 0 1 1 1 0 Double zinc ribbon Sigma70_r4 PF04545.11 gi|452206769|ref|YP_007486891.1| - 0.032 13.5 1.2 0.48 9.7 0.0 3.1 3 0 0 3 3 3 0 Sigma-70, region 4 Cyclin_C PF02984.14 gi|452206769|ref|YP_007486891.1| - 0.096 12.6 0.0 0.25 11.2 0.0 1.6 2 0 0 2 2 2 0 Cyclin, C-terminal domain Rubredoxin PF00301.15 gi|452206769|ref|YP_007486891.1| - 0.12 12.3 0.4 16 5.4 0.0 2.5 2 0 0 2 2 2 0 Rubredoxin zinc-ribbons_6 PF07191.7 gi|452206769|ref|YP_007486891.1| - 0.18 11.6 0.9 0.36 10.6 0.6 1.5 1 0 0 1 1 1 0 zinc-ribbons A2L_zn_ribbon PF08792.5 gi|452206769|ref|YP_007486891.1| - 0.18 11.2 0.4 0.38 10.2 0.2 1.6 1 0 0 1 1 1 0 A2L zinc ribbon domain Zn-ribbon_8 PF09723.5 gi|452206769|ref|YP_007486891.1| - 2.1 8.3 6.4 3.2 7.7 0.9 2.4 1 1 1 2 2 2 0 Zinc ribbon domain zf-IS66 PF13005.2 gi|452206769|ref|YP_007486891.1| - 7.7 6.5 7.3 16 5.5 1.5 3.3 2 1 1 3 3 3 0 zinc-finger binding domain of transposase IS66 zinc_ribbon_4 PF13717.1 gi|452206770|ref|YP_007486892.1| - 0.00027 20.5 0.4 0.52 10.0 0.1 2.1 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|452206770|ref|YP_007486892.1| - 0.00034 20.1 0.8 0.38 10.3 0.1 2.1 2 0 0 2 2 2 2 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|452206770|ref|YP_007486892.1| - 0.002 17.7 0.7 0.0026 17.3 0.5 1.2 1 0 0 1 1 1 1 Putative transposase DNA-binding domain PhnA_Zn_Ribbon PF08274.7 gi|452206770|ref|YP_007486892.1| - 0.0038 16.9 0.4 0.33 10.7 0.1 2.2 2 0 0 2 2 2 1 PhnA Zinc-Ribbon TF_Zn_Ribbon PF08271.7 gi|452206770|ref|YP_007486892.1| - 0.0038 16.5 1.3 1.1 8.6 0.0 2.3 2 1 1 3 3 3 2 TFIIB zinc-binding Stc1 PF12898.2 gi|452206770|ref|YP_007486892.1| - 0.004 17.1 0.6 0.0056 16.7 0.4 1.4 1 1 0 1 1 1 1 Stc1 domain RNHCP PF12647.2 gi|452206770|ref|YP_007486892.1| - 0.0062 16.3 0.5 0.0072 16.1 0.3 1.2 1 0 0 1 1 1 1 RNHCP domain zf-ribbon_3 PF13248.1 gi|452206770|ref|YP_007486892.1| - 0.0079 15.3 1.5 1.5 8.1 0.1 2.2 2 0 0 2 2 2 1 zinc-ribbon domain DZR PF12773.2 gi|452206770|ref|YP_007486892.1| - 0.0092 15.7 2.2 0.018 14.8 1.5 1.5 1 1 0 1 1 1 1 Double zinc ribbon UPF0547 PF10571.4 gi|452206770|ref|YP_007486892.1| - 0.012 15.3 5.1 0.11 12.2 0.1 2.1 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 HypA PF01155.14 gi|452206770|ref|YP_007486892.1| - 0.012 15.2 0.2 0.012 15.2 0.2 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family CpXC PF14353.1 gi|452206770|ref|YP_007486892.1| - 0.017 15.0 0.3 2 8.3 0.0 2.1 2 0 0 2 2 2 0 CpXC protein DUF1610 PF07754.6 gi|452206770|ref|YP_007486892.1| - 0.031 14.3 0.8 1.1 9.4 0.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) DUF2296 PF10058.4 gi|452206770|ref|YP_007486892.1| - 0.034 13.8 0.2 0.044 13.5 0.1 1.3 1 0 0 1 1 1 0 Predicted integral membrane metal-binding protein (DUF2296) Zn_Tnp_IS1595 PF12760.2 gi|452206770|ref|YP_007486892.1| - 0.044 13.5 4.3 0.54 10.1 0.3 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zinc-ribbons_6 PF07191.7 gi|452206770|ref|YP_007486892.1| - 0.056 13.2 1.2 0.19 11.5 0.8 1.7 1 1 0 1 1 1 0 zinc-ribbons zinc_ribbon_2 PF13240.1 gi|452206770|ref|YP_007486892.1| - 0.057 12.9 1.2 1.2 8.6 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain XPA_N PF01286.13 gi|452206770|ref|YP_007486892.1| - 0.06 13.0 2.1 3.8 7.2 0.3 2.2 2 0 0 2 2 2 0 XPA protein N-terminal Elf1 PF05129.8 gi|452206770|ref|YP_007486892.1| - 0.061 13.0 1.3 0.19 11.4 0.1 1.9 1 1 1 2 2 2 0 Transcription elongation factor Elf1 like NMD3 PF04981.8 gi|452206770|ref|YP_007486892.1| - 0.069 12.2 0.1 0.076 12.1 0.0 1.1 1 0 0 1 1 1 0 NMD3 family DUF4379 PF14311.1 gi|452206770|ref|YP_007486892.1| - 0.072 12.9 1.3 0.12 12.1 0.9 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4379) Zn-ribbon_8 PF09723.5 gi|452206770|ref|YP_007486892.1| - 0.075 12.9 4.5 0.76 9.7 3.0 2.1 1 1 0 1 1 1 0 Zinc ribbon domain TFIIS_C PF01096.13 gi|452206770|ref|YP_007486892.1| - 0.11 12.1 2.0 3.2 7.4 0.1 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-ISL3 PF14690.1 gi|452206770|ref|YP_007486892.1| - 0.12 12.4 1.3 5.7 7.0 0.1 2.2 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-CHY PF05495.7 gi|452206770|ref|YP_007486892.1| - 0.12 12.5 1.7 0.69 10.1 1.0 1.9 1 1 1 2 2 2 0 CHY zinc finger zf-H2C2_2 PF13465.1 gi|452206770|ref|YP_007486892.1| - 0.14 12.5 2.8 10 6.6 0.2 2.3 2 0 0 2 2 2 0 Zinc-finger double domain ADK_lid PF05191.9 gi|452206770|ref|YP_007486892.1| - 0.15 11.7 1.2 0.48 10.1 0.8 1.8 1 1 0 1 1 1 0 Adenylate kinase, active site lid RRN7 PF11781.3 gi|452206770|ref|YP_007486892.1| - 0.16 11.4 0.7 2.6 7.6 0.0 2.1 2 0 0 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 zf-TFIIB PF13453.1 gi|452206770|ref|YP_007486892.1| - 0.16 11.1 4.1 0.88 8.8 0.2 2.1 1 1 1 2 2 2 0 Transcription factor zinc-finger Zn_Tnp_IS1 PF03811.8 gi|452206770|ref|YP_007486892.1| - 0.17 11.4 1.0 3.5 7.1 0.1 2.1 2 0 0 2 2 2 0 InsA N-terminal domain Rubredoxin PF00301.15 gi|452206770|ref|YP_007486892.1| - 0.24 11.3 5.6 0.69 9.8 0.3 2.2 1 1 1 2 2 2 0 Rubredoxin DUF35_N PF12172.3 gi|452206770|ref|YP_007486892.1| - 0.25 11.3 3.0 4.1 7.4 0.1 2.2 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) DUF329 PF03884.9 gi|452206770|ref|YP_007486892.1| - 0.28 10.7 4.4 1.7 8.2 0.3 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF329) Ogr_Delta PF04606.7 gi|452206770|ref|YP_007486892.1| - 0.29 10.8 2.6 8.5 6.1 0.1 2.2 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger DNA_ligase_ZBD PF03119.11 gi|452206770|ref|YP_007486892.1| - 0.31 10.7 6.0 3.2 7.5 0.1 2.2 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zf-IS66 PF13005.2 gi|452206770|ref|YP_007486892.1| - 0.44 10.5 3.6 4.5 7.3 0.7 2.2 1 1 1 2 2 2 0 zinc-finger binding domain of transposase IS66 Nudix_N_2 PF14803.1 gi|452206770|ref|YP_007486892.1| - 0.44 10.2 4.1 2.7 7.7 0.1 1.9 1 1 1 2 2 2 0 Nudix N-terminal zf-RING_3 PF14369.1 gi|452206770|ref|YP_007486892.1| - 1.8 8.6 5.7 11 6.0 0.2 2.1 1 1 1 2 2 2 0 zinc-finger DUF420 PF04238.7 gi|452206771|ref|YP_007486893.1| - 6.2e-35 120.0 4.5 6.2e-35 120.0 3.1 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF420) DUF2306 PF10067.4 gi|452206771|ref|YP_007486893.1| - 2e-05 24.6 11.5 0.00014 21.8 1.9 2.9 2 1 1 3 3 3 2 Predicted membrane protein (DUF2306) DUF1240 PF06836.7 gi|452206771|ref|YP_007486893.1| - 3.3 7.9 5.2 0.35 11.1 0.3 1.8 3 0 0 3 3 3 0 Protein of unknown function (DUF1240) FixQ PF05545.6 gi|452206771|ref|YP_007486893.1| - 9.6 5.9 10.2 0.6 9.7 0.1 3.1 3 0 0 3 3 3 0 Cbb3-type cytochrome oxidase component FixQ HATPase_c PF02518.21 gi|452206772|ref|YP_007486894.1| - 1.5e-19 69.7 0.0 3.7e-19 68.4 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.5 gi|452206772|ref|YP_007486894.1| - 5.1e-16 58.6 0.3 2.1e-09 37.3 0.0 3.7 2 1 0 2 2 2 2 PAS fold PAS_9 PF13426.1 gi|452206772|ref|YP_007486894.1| - 5.9e-14 52.3 0.0 1.1e-08 35.3 0.0 3.2 3 0 0 3 3 3 2 PAS domain PAS PF00989.19 gi|452206772|ref|YP_007486894.1| - 5.2e-11 42.3 0.0 1.9e-05 24.4 0.0 2.8 2 0 0 2 2 2 2 PAS fold PAS_8 PF13188.1 gi|452206772|ref|YP_007486894.1| - 6.1e-11 41.7 0.1 6.4e-05 22.6 0.0 3.3 3 0 0 3 3 3 2 PAS domain HATPase_c_2 PF13581.1 gi|452206772|ref|YP_007486894.1| - 2e-06 27.6 0.0 4.8e-06 26.3 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.1 gi|452206772|ref|YP_007486894.1| - 6.9e-05 22.4 0.0 0.00015 21.4 0.0 1.5 1 0 0 1 1 1 1 GHKL domain PAS_7 PF12860.2 gi|452206772|ref|YP_007486894.1| - 0.0038 17.2 2.3 0.21 11.6 0.0 4.1 3 1 0 4 4 4 1 PAS fold Ku_N PF03731.10 gi|452206772|ref|YP_007486894.1| - 0.05 13.0 0.5 0.1 12.0 0.0 1.8 2 0 0 2 2 2 0 Ku70/Ku80 N-terminal alpha/beta domain DUF4618 PF15397.1 gi|452206772|ref|YP_007486894.1| - 0.27 10.5 7.3 0.56 9.4 3.9 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4618) Response_reg PF00072.19 gi|452206773|ref|YP_007486895.1| - 4e-22 78.3 0.1 1.1e-21 76.8 0.1 1.8 1 0 0 1 1 1 1 Response regulator receiver domain HTH_10 PF04967.7 gi|452206773|ref|YP_007486895.1| - 2.4e-20 71.8 0.1 5.5e-20 70.7 0.1 1.7 1 0 0 1 1 1 1 HTH DNA binding domain GAF_2 PF13185.1 gi|452206773|ref|YP_007486895.1| - 2.2e-19 70.3 4.3 1.2e-18 67.9 0.1 3.1 3 0 0 3 3 3 1 GAF domain PAS_9 PF13426.1 gi|452206773|ref|YP_007486895.1| - 1.3e-10 41.5 0.4 2e-09 37.7 0.0 2.5 2 0 0 2 2 2 1 PAS domain GAF PF01590.21 gi|452206773|ref|YP_007486895.1| - 4.9e-10 39.7 3.8 1.9e-09 37.8 0.1 3.3 2 1 0 3 3 3 1 GAF domain PAS_3 PF08447.6 gi|452206773|ref|YP_007486895.1| - 8.1e-10 38.6 0.2 2.2e-09 37.2 0.0 1.9 2 0 0 2 2 1 1 PAS fold PAS_4 PF08448.5 gi|452206773|ref|YP_007486895.1| - 8.8e-10 38.6 2.0 8.8e-10 38.6 1.4 2.5 3 0 0 3 3 3 1 PAS fold PAS PF00989.19 gi|452206773|ref|YP_007486895.1| - 4.4e-09 36.1 0.2 1.4e-08 34.5 0.1 1.9 1 0 0 1 1 1 1 PAS fold GAF_3 PF13492.1 gi|452206773|ref|YP_007486895.1| - 1.7e-08 34.6 0.1 8.3e-08 32.3 0.0 2.2 2 0 0 2 2 2 1 GAF domain PAS_8 PF13188.1 gi|452206773|ref|YP_007486895.1| - 2.2e-06 27.3 0.1 7.1e-06 25.6 0.1 1.9 1 0 0 1 1 1 1 PAS domain OKR_DC_1_N PF03709.10 gi|452206773|ref|YP_007486895.1| - 1.4e-05 25.1 0.5 5.2e-05 23.2 0.1 2.1 2 0 0 2 2 2 1 Orn/Lys/Arg decarboxylase, N-terminal domain HTH_22 PF13309.1 gi|452206773|ref|YP_007486895.1| - 0.006 16.3 0.2 0.098 12.4 0.0 2.5 2 0 0 2 2 2 1 HTH domain HTH_24 PF13412.1 gi|452206773|ref|YP_007486895.1| - 0.0097 15.2 0.0 0.037 13.4 0.0 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_23 PF13384.1 gi|452206773|ref|YP_007486895.1| - 0.013 15.1 0.1 0.064 12.9 0.0 2.3 2 0 0 2 2 2 0 Homeodomain-like domain HTH_IclR PF09339.5 gi|452206773|ref|YP_007486895.1| - 0.26 10.9 3.3 0.42 10.2 0.2 2.9 3 0 0 3 3 3 0 IclR helix-turn-helix domain Cast PF10174.4 gi|452206774|ref|YP_007486896.1| - 6.2e-06 24.5 1.0 7e-06 24.4 0.7 1.0 1 0 0 1 1 1 1 RIM-binding protein of the cytomatrix active zone MscS_porin PF12795.2 gi|452206774|ref|YP_007486896.1| - 3.8e-05 23.1 4.4 4.5e-05 22.9 3.1 1.1 1 0 0 1 1 1 1 Mechanosensitive ion channel porin domain CENP-F_leu_zip PF10473.4 gi|452206774|ref|YP_007486896.1| - 7.6e-05 22.6 5.5 9e-05 22.3 3.8 1.1 1 0 0 1 1 1 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 CENP-Q PF13094.1 gi|452206774|ref|YP_007486896.1| - 8.5e-05 22.6 3.9 0.00011 22.2 2.7 1.2 1 0 0 1 1 1 1 CENP-Q, a CENPA-CAD centromere complex subunit HAP1_N PF04849.8 gi|452206774|ref|YP_007486896.1| - 8.8e-05 21.5 5.3 0.00011 21.2 3.6 1.0 1 0 0 1 1 1 1 HAP1 N-terminal conserved region Tropomyosin PF00261.15 gi|452206774|ref|YP_007486896.1| - 9.3e-05 21.6 4.4 0.00011 21.4 3.0 1.1 1 0 0 1 1 1 1 Tropomyosin ATG16 PF08614.6 gi|452206774|ref|YP_007486896.1| - 0.00013 21.8 4.7 0.00015 21.6 3.3 1.1 1 0 0 1 1 1 1 Autophagy protein 16 (ATG16) PspA_IM30 PF04012.7 gi|452206774|ref|YP_007486896.1| - 0.00019 20.8 4.2 0.00024 20.5 2.9 1.2 1 0 0 1 1 1 1 PspA/IM30 family SlyX PF04102.7 gi|452206774|ref|YP_007486896.1| - 0.0002 21.6 6.1 0.00063 20.0 4.1 1.7 1 1 0 1 1 1 1 SlyX Mod_r PF07200.8 gi|452206774|ref|YP_007486896.1| - 0.00031 20.6 1.3 0.00037 20.4 0.9 1.0 1 0 0 1 1 1 1 Modifier of rudimentary (Mod(r)) protein BRE1 PF08647.6 gi|452206774|ref|YP_007486896.1| - 0.00035 20.4 1.1 0.0005 19.9 0.8 1.3 1 0 0 1 1 1 1 BRE1 E3 ubiquitin ligase IncA PF04156.9 gi|452206774|ref|YP_007486896.1| - 0.00039 20.0 4.6 0.00052 19.6 3.2 1.2 1 0 0 1 1 1 1 IncA protein Spc7 PF08317.6 gi|452206774|ref|YP_007486896.1| - 0.00062 18.5 1.1 0.00071 18.3 0.8 1.0 1 0 0 1 1 1 1 Spc7 kinetochore protein Leu_zip PF15294.1 gi|452206774|ref|YP_007486896.1| - 0.00097 18.3 2.4 0.0012 18.0 1.6 1.1 1 0 0 1 1 1 1 Leucine zipper DivIC PF04977.10 gi|452206774|ref|YP_007486896.1| - 0.0011 18.4 6.3 0.14 11.6 1.5 2.1 1 1 1 2 2 2 2 Septum formation initiator DUF4407 PF14362.1 gi|452206774|ref|YP_007486896.1| - 0.0011 17.9 2.3 0.0015 17.5 1.6 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4407) ADIP PF11559.3 gi|452206774|ref|YP_007486896.1| - 0.0012 18.8 7.1 0.0015 18.4 4.9 1.1 1 0 0 1 1 1 1 Afadin- and alpha -actinin-Binding MAD PF05557.8 gi|452206774|ref|YP_007486896.1| - 0.0013 16.9 1.5 0.0016 16.6 1.0 1.0 1 0 0 1 1 1 1 Mitotic checkpoint protein FliJ PF02050.11 gi|452206774|ref|YP_007486896.1| - 0.002 18.1 1.6 0.0025 17.8 1.1 1.1 1 0 0 1 1 1 1 Flagellar FliJ protein PspB PF06667.7 gi|452206774|ref|YP_007486896.1| - 0.0021 17.9 4.9 0.042 13.7 0.7 2.3 1 1 1 2 2 2 1 Phage shock protein B bZIP_1 PF00170.16 gi|452206774|ref|YP_007486896.1| - 0.0023 17.8 5.0 0.075 12.9 0.1 2.1 1 1 1 2 2 2 1 bZIP transcription factor Snf7 PF03357.16 gi|452206774|ref|YP_007486896.1| - 0.0023 17.3 0.4 0.0028 17.0 0.3 1.0 1 0 0 1 1 1 1 Snf7 TPR_MLP1_2 PF07926.7 gi|452206774|ref|YP_007486896.1| - 0.0024 17.6 2.4 0.0033 17.1 1.7 1.2 1 0 0 1 1 1 1 TPR/MLP1/MLP2-like protein DUF869 PF05911.6 gi|452206774|ref|YP_007486896.1| - 0.0031 15.8 2.1 0.0036 15.6 1.5 1.0 1 0 0 1 1 1 1 Plant protein of unknown function (DUF869) BicD PF09730.4 gi|452206774|ref|YP_007486896.1| - 0.0032 15.8 6.0 0.0037 15.7 4.2 1.0 1 0 0 1 1 1 1 Microtubule-associated protein Bicaudal-D Tropomyosin_1 PF12718.2 gi|452206774|ref|YP_007486896.1| - 0.0033 17.2 6.4 0.0043 16.9 4.4 1.1 1 0 0 1 1 1 1 Tropomyosin like Prefoldin_2 PF01920.15 gi|452206774|ref|YP_007486896.1| - 0.0041 16.8 7.1 0.044 13.5 1.9 2.0 1 1 1 2 2 2 1 Prefoldin subunit CALCOCO1 PF07888.6 gi|452206774|ref|YP_007486896.1| - 0.0045 15.3 1.8 0.0051 15.1 1.3 1.0 1 0 0 1 1 1 1 Calcium binding and coiled-coil domain (CALCOCO1) like GAS PF13851.1 gi|452206774|ref|YP_007486896.1| - 0.0045 16.1 4.3 0.0055 15.9 3.0 1.1 1 0 0 1 1 1 1 Growth-arrest specific micro-tubule binding TBPIP PF07106.8 gi|452206774|ref|YP_007486896.1| - 0.0056 16.2 2.5 0.0063 16.0 1.7 1.0 1 0 0 1 1 1 1 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) HOOK PF05622.7 gi|452206774|ref|YP_007486896.1| - 0.0073 14.1 2.8 0.0084 13.9 2.0 1.0 1 0 0 1 1 1 1 HOOK protein Atg14 PF10186.4 gi|452206774|ref|YP_007486896.1| - 0.0084 15.0 3.8 0.012 14.5 2.6 1.2 1 0 0 1 1 1 1 UV radiation resistance protein and autophagy-related subunit 14 Baculo_PEP_C PF04513.7 gi|452206774|ref|YP_007486896.1| - 0.0089 15.8 1.1 0.012 15.4 0.8 1.1 1 0 0 1 1 1 1 Baculovirus polyhedron envelope protein, PEP, C terminus IFT57 PF10498.4 gi|452206774|ref|YP_007486896.1| - 0.0095 14.7 1.0 0.011 14.4 0.7 1.1 1 0 0 1 1 1 1 Intra-flagellar transport protein 57 AAA_13 PF13166.1 gi|452206774|ref|YP_007486896.1| - 0.012 14.1 0.8 0.014 13.9 0.6 1.0 1 0 0 1 1 1 0 AAA domain Mnd1 PF03962.10 gi|452206774|ref|YP_007486896.1| - 0.012 15.2 2.7 0.017 14.7 1.9 1.2 1 0 0 1 1 1 0 Mnd1 family Med9 PF07544.8 gi|452206774|ref|YP_007486896.1| - 0.018 14.7 6.6 0.95 9.2 1.5 2.1 1 1 1 2 2 2 0 RNA polymerase II transcription mediator complex subunit 9 Laminin_II PF06009.7 gi|452206774|ref|YP_007486896.1| - 0.019 14.7 1.2 0.025 14.3 0.9 1.1 1 0 0 1 1 1 0 Laminin Domain II DUF3584 PF12128.3 gi|452206774|ref|YP_007486896.1| - 0.019 12.3 4.2 0.021 12.1 2.9 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) DUF4200 PF13863.1 gi|452206774|ref|YP_007486896.1| - 0.025 14.5 9.0 0.059 13.3 6.3 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4200) MIP-T3 PF10243.4 gi|452206774|ref|YP_007486896.1| - 0.026 13.0 3.8 0.033 12.6 2.6 1.0 1 0 0 1 1 1 0 Microtubule-binding protein MIP-T3 Reo_sigmaC PF04582.7 gi|452206774|ref|YP_007486896.1| - 0.028 13.5 0.1 0.034 13.3 0.0 1.1 1 0 0 1 1 1 0 Reovirus sigma C capsid protein Troponin PF00992.15 gi|452206774|ref|YP_007486896.1| - 0.031 14.3 2.7 0.036 14.1 1.9 1.1 1 0 0 1 1 1 0 Troponin bZIP_2 PF07716.10 gi|452206774|ref|YP_007486896.1| - 0.032 14.0 0.2 0.032 14.0 0.2 2.3 1 1 1 2 2 2 0 Basic region leucine zipper Mito_fiss_reg PF05308.6 gi|452206774|ref|YP_007486896.1| - 0.035 13.4 1.9 0.04 13.2 1.3 1.0 1 0 0 1 1 1 0 Mitochondrial fission regulator DUF3450 PF11932.3 gi|452206774|ref|YP_007486896.1| - 0.038 13.2 1.8 0.045 13.0 1.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3450) Cep57_CLD_2 PF14197.1 gi|452206774|ref|YP_007486896.1| - 0.042 13.7 9.1 0.3 11.0 0.3 2.4 1 1 0 2 2 2 0 Centrosome localisation domain of PPC89 TMF_DNA_bd PF12329.3 gi|452206774|ref|YP_007486896.1| - 0.047 13.5 8.7 0.12 12.2 6.0 1.7 1 1 0 1 1 1 0 TATA element modulatory factor 1 DNA binding DUF4201 PF13870.1 gi|452206774|ref|YP_007486896.1| - 0.049 13.0 5.1 0.069 12.5 3.5 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4201) ERM PF00769.14 gi|452206774|ref|YP_007486896.1| - 0.05 13.1 5.6 0.06 12.8 3.9 1.1 1 0 0 1 1 1 0 Ezrin/radixin/moesin family V_ATPase_I PF01496.14 gi|452206774|ref|YP_007486896.1| - 0.052 11.4 0.9 0.058 11.2 0.6 1.0 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family APG6 PF04111.7 gi|452206774|ref|YP_007486896.1| - 0.052 12.5 3.8 0.063 12.3 2.6 1.0 1 0 0 1 1 1 0 Autophagy protein Apg6 ABC_tran_2 PF12848.2 gi|452206774|ref|YP_007486896.1| - 0.052 13.3 2.0 0.074 12.8 1.4 1.3 1 0 0 1 1 1 0 ABC transporter Allexi_40kDa PF05549.6 gi|452206774|ref|YP_007486896.1| - 0.057 12.6 0.6 0.057 12.6 0.4 1.0 1 0 0 1 1 1 0 Allexivirus 40kDa protein DUF3552 PF12072.3 gi|452206774|ref|YP_007486896.1| - 0.06 12.5 7.2 0.084 12.0 5.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3552) DUF641 PF04859.7 gi|452206774|ref|YP_007486896.1| - 0.063 13.0 1.6 0.076 12.7 1.1 1.2 1 0 0 1 1 1 0 Plant protein of unknown function (DUF641) Hemerythrin PF01814.18 gi|452206774|ref|YP_007486896.1| - 0.068 13.3 1.7 2.2 8.4 1.2 2.1 1 1 0 1 1 1 0 Hemerythrin HHE cation binding domain GrpE PF01025.14 gi|452206774|ref|YP_007486896.1| - 0.071 12.6 3.2 0.084 12.4 2.2 1.1 1 0 0 1 1 1 0 GrpE Striatin PF08232.7 gi|452206774|ref|YP_007486896.1| - 0.071 13.4 5.3 0.3 11.4 3.7 1.8 1 1 0 1 1 1 0 Striatin family FlaC_arch PF05377.6 gi|452206774|ref|YP_007486896.1| - 0.071 13.0 3.2 1.9 8.4 0.2 2.3 1 1 2 3 3 3 0 Flagella accessory protein C (FlaC) TMF_TATA_bd PF12325.3 gi|452206774|ref|YP_007486896.1| - 0.071 12.8 8.3 0.99 9.1 1.3 1.9 1 1 1 2 2 2 0 TATA element modulatory factor 1 TATA binding COG5 PF10392.4 gi|452206774|ref|YP_007486896.1| - 0.077 12.9 1.5 0.39 10.6 0.2 1.8 1 1 1 2 2 2 0 Golgi transport complex subunit 5 DUF972 PF06156.8 gi|452206774|ref|YP_007486896.1| - 0.091 13.1 2.5 0.13 12.5 1.8 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF972) DivIVA PF05103.8 gi|452206774|ref|YP_007486896.1| - 0.094 12.7 4.6 1.7 8.6 3.7 1.8 1 1 1 2 2 2 0 DivIVA protein Macoilin PF09726.4 gi|452206774|ref|YP_007486896.1| - 0.095 10.9 2.8 0.11 10.8 1.9 1.0 1 0 0 1 1 1 0 Transmembrane protein Rep_4 PF05797.6 gi|452206774|ref|YP_007486896.1| - 0.1 11.2 0.7 0.11 11.2 0.5 1.0 1 0 0 1 1 1 0 Yeast trans-acting factor (REP1/REP2) Vps5 PF09325.5 gi|452206774|ref|YP_007486896.1| - 0.11 11.7 2.5 0.18 11.0 1.7 1.4 1 1 0 1 1 1 0 Vps5 C terminal like DUF2937 PF11157.3 gi|452206774|ref|YP_007486896.1| - 0.11 11.8 1.1 0.98 8.7 0.5 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF2937) DUF4140 PF13600.1 gi|452206774|ref|YP_007486896.1| - 0.11 12.9 8.4 1.1 9.7 2.6 2.1 1 1 1 2 2 2 0 N-terminal domain of unknown function (DUF4140) DUF342 PF03961.8 gi|452206774|ref|YP_007486896.1| - 0.12 10.7 1.8 0.15 10.4 1.2 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF342) DUF16 PF01519.11 gi|452206774|ref|YP_007486896.1| - 0.12 12.5 3.0 0.21 11.8 2.1 1.4 1 1 0 1 1 1 0 Protein of unknown function DUF16 UPF0449 PF15136.1 gi|452206774|ref|YP_007486896.1| - 0.14 12.4 4.9 0.18 12.0 0.9 2.0 1 1 1 2 2 2 0 Uncharacterised protein family UPF0449 CENP-F_N PF10481.4 gi|452206774|ref|YP_007486896.1| - 0.14 11.5 3.4 0.72 9.1 2.4 1.7 1 1 0 1 1 1 0 Cenp-F N-terminal domain FemAB PF02388.11 gi|452206774|ref|YP_007486896.1| - 0.15 10.7 1.2 0.16 10.6 0.8 1.0 1 0 0 1 1 1 0 FemAB family COG2 PF06148.6 gi|452206774|ref|YP_007486896.1| - 0.16 11.8 2.6 0.8 9.5 1.3 1.8 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 HSBP1 PF06825.7 gi|452206774|ref|YP_007486896.1| - 0.17 11.5 1.6 3.4 7.3 0.1 2.7 1 1 1 2 2 2 0 Heat shock factor binding protein 1 Prefoldin PF02996.12 gi|452206774|ref|YP_007486896.1| - 0.17 11.5 5.3 4 7.0 0.2 2.1 1 1 1 2 2 2 0 Prefoldin subunit Fmp27_WPPW PF10359.4 gi|452206774|ref|YP_007486896.1| - 0.18 10.1 4.1 0.19 10.0 2.9 1.0 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain XhlA PF10779.4 gi|452206774|ref|YP_007486896.1| - 0.2 11.5 8.9 17 5.4 6.2 2.2 1 1 0 1 1 1 0 Haemolysin XhlA DUF1664 PF07889.7 gi|452206774|ref|YP_007486896.1| - 0.23 11.2 1.8 0.3 10.9 1.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) DUF2570 PF10828.3 gi|452206774|ref|YP_007486896.1| - 0.24 10.9 4.7 0.47 10.0 3.2 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2570) RmuC PF02646.11 gi|452206774|ref|YP_007486896.1| - 0.27 10.0 3.9 0.3 9.8 2.7 1.0 1 0 0 1 1 1 0 RmuC family Fib_alpha PF08702.5 gi|452206774|ref|YP_007486896.1| - 0.29 11.2 4.3 0.45 10.6 3.0 1.4 1 1 0 1 1 1 0 Fibrinogen alpha/beta chain family Uds1 PF15456.1 gi|452206774|ref|YP_007486896.1| - 0.32 10.9 6.3 1.2 9.1 4.3 1.8 1 1 0 1 1 1 0 Up-regulated During Septation DUF2802 PF10975.3 gi|452206774|ref|YP_007486896.1| - 0.32 10.7 4.8 8.9 6.1 0.1 2.6 1 1 1 2 2 2 0 Protein of unknown function (DUF2802) Spc24 PF08286.6 gi|452206774|ref|YP_007486896.1| - 0.36 10.5 6.2 3 7.5 4.3 1.9 1 1 0 1 1 1 0 Spc24 subunit of Ndc80 Phage_GP20 PF06810.6 gi|452206774|ref|YP_007486896.1| - 0.4 10.1 5.1 1 8.7 3.7 1.5 1 1 0 1 1 1 0 Phage minor structural protein GP20 FUSC PF04632.7 gi|452206774|ref|YP_007486896.1| - 0.46 8.8 2.1 0.51 8.6 1.4 1.0 1 0 0 1 1 1 0 Fusaric acid resistance protein family DUF4446 PF14584.1 gi|452206774|ref|YP_007486896.1| - 0.57 9.9 3.2 2.8 7.7 2.2 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF4446) THOC7 PF05615.8 gi|452206774|ref|YP_007486896.1| - 0.68 10.1 8.2 6.1 7.1 6.2 1.8 1 1 1 2 2 2 0 Tho complex subunit 7 HalX PF08663.5 gi|452206774|ref|YP_007486896.1| - 0.75 9.8 6.0 1.2 9.1 0.5 2.4 1 1 2 3 3 2 0 HalX domain Syntaxin PF00804.20 gi|452206774|ref|YP_007486896.1| - 0.86 9.8 6.0 1.8 8.7 4.1 1.6 1 1 0 1 1 1 0 Syntaxin Sugarporin_N PF11471.3 gi|452206774|ref|YP_007486896.1| - 0.95 9.1 7.8 0.24 11.0 3.0 1.8 2 0 0 2 2 1 0 Maltoporin periplasmic N-terminal extension DUF2730 PF10805.3 gi|452206774|ref|YP_007486896.1| - 1.2 8.8 3.9 4.5 7.0 0.4 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF2730) Med21 PF11221.3 gi|452206774|ref|YP_007486896.1| - 1.3 9.0 7.7 1.3 8.9 2.1 2.0 1 1 1 2 2 2 0 Subunit 21 of Mediator complex M PF02370.11 gi|452206774|ref|YP_007486896.1| - 1.3 9.6 4.8 9.3 7.0 0.1 2.6 2 0 0 2 2 2 0 M protein repeat DUF4164 PF13747.1 gi|452206774|ref|YP_007486896.1| - 1.3 9.1 10.7 2.7 8.1 7.4 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4164) DUF2951 PF11166.3 gi|452206774|ref|YP_007486896.1| - 1.7 8.5 5.4 1.1 9.1 0.2 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2951) IFP_35_N PF07334.8 gi|452206774|ref|YP_007486896.1| - 3.4 7.7 6.6 11 6.0 0.3 2.7 1 1 2 3 3 3 0 Interferon-induced 35 kDa protein (IFP 35) N-terminus CASP_C PF08172.7 gi|452206774|ref|YP_007486896.1| - 3.9 6.4 7.6 2.7 6.9 1.7 1.9 1 1 1 2 2 2 0 CASP C terminal DUF86 PF01934.12 gi|452206775|ref|YP_007486897.1| - 3.6e-14 52.4 0.1 4.2e-14 52.2 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF86 GvpK PF05121.7 gi|452206775|ref|YP_007486897.1| - 0.033 14.0 0.1 0.064 13.0 0.0 1.5 1 0 0 1 1 1 0 Gas vesicle protein K DUF3142 PF11340.3 gi|452206775|ref|YP_007486897.1| - 0.12 12.0 0.1 0.17 11.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3142) NTP_transf_2 PF01909.18 gi|452206776|ref|YP_007486898.1| - 8.8e-05 22.7 0.5 0.00013 22.2 0.3 1.6 1 1 0 1 1 1 1 Nucleotidyltransferase domain DUF294 PF03445.8 gi|452206776|ref|YP_007486898.1| - 0.0046 16.5 0.0 0.0085 15.7 0.0 1.4 1 0 0 1 1 1 1 Putative nucleotidyltransferase DUF294 Cadherin PF00028.12 gi|452206777|ref|YP_007486899.1| - 9.7e-53 176.4 75.5 9.3e-08 32.2 2.3 10.1 9 0 0 9 9 9 8 Cadherin domain Big_5 PF13205.1 gi|452206777|ref|YP_007486899.1| - 1.8e-15 57.4 7.0 1.8e-15 57.4 4.9 13.8 3 3 11 14 14 14 1 Bacterial Ig-like domain PepSY_TM_2 PF13703.1 gi|452206777|ref|YP_007486899.1| - 1.6 8.9 0.7 3 8.0 0.5 1.3 1 0 0 1 1 1 0 PepSY-associated TM helix HTH_31 PF13560.1 gi|452206778|ref|YP_007486900.1| - 1.4e-05 25.1 2.0 1.4e-05 25.1 1.4 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_25 PF13413.1 gi|452206778|ref|YP_007486900.1| - 0.0012 18.4 0.6 0.0027 17.2 0.4 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.2 gi|452206778|ref|YP_007486900.1| - 0.053 13.5 0.0 0.094 12.7 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Pantoate_transf PF02548.10 gi|452206780|ref|YP_007486902.1| - 6.7e-96 320.4 0.0 7.5e-96 320.2 0.0 1.0 1 0 0 1 1 1 1 Ketopantoate hydroxymethyltransferase PEP_mutase PF13714.1 gi|452206780|ref|YP_007486902.1| - 9.9e-06 24.9 1.2 4.1e-05 22.9 0.7 2.0 1 1 2 3 3 3 1 Phosphoenolpyruvate phosphomutase Bac_luciferase PF00296.15 gi|452206780|ref|YP_007486902.1| - 0.0059 15.7 0.4 0.26 10.3 0.1 2.3 2 0 0 2 2 2 2 Luciferase-like monooxygenase ABC_tran PF00005.22 gi|452206781|ref|YP_007486903.1| - 8.1e-28 97.4 0.0 1.8e-27 96.3 0.0 1.6 2 0 0 2 2 1 1 ABC transporter AAA_21 PF13304.1 gi|452206781|ref|YP_007486903.1| - 2.7e-12 47.2 0.1 1.6e-06 28.3 0.0 2.2 2 0 0 2 2 2 2 AAA domain AAA_25 PF13481.1 gi|452206781|ref|YP_007486903.1| - 0.00012 21.5 0.6 0.00035 20.0 0.3 2.0 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|452206781|ref|YP_007486903.1| - 0.00056 20.0 0.3 0.0052 16.9 0.2 2.1 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|452206781|ref|YP_007486903.1| - 0.00063 19.2 0.2 0.0012 18.3 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|452206781|ref|YP_007486903.1| - 0.0012 18.0 0.0 0.53 9.2 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain SMC_N PF02463.14 gi|452206781|ref|YP_007486903.1| - 0.0021 17.3 0.1 0.34 10.0 0.0 2.2 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain ELFV_dehydrog_N PF02812.13 gi|452206781|ref|YP_007486903.1| - 0.0025 17.4 0.0 0.0043 16.6 0.0 1.3 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AAA_23 PF13476.1 gi|452206781|ref|YP_007486903.1| - 0.0025 18.1 0.0 0.0035 17.6 0.0 1.2 1 0 0 1 1 1 1 AAA domain UPF0079 PF02367.12 gi|452206781|ref|YP_007486903.1| - 0.0057 16.2 0.1 0.013 15.1 0.0 1.5 1 0 0 1 1 1 1 Uncharacterised P-loop hydrolase UPF0079 DUF4162 PF13732.1 gi|452206781|ref|YP_007486903.1| - 0.0073 16.7 0.0 0.014 15.9 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) ArgK PF03308.11 gi|452206781|ref|YP_007486903.1| - 0.0084 14.9 0.3 0.016 13.9 0.2 1.4 1 0 0 1 1 1 1 ArgK protein AAA PF00004.24 gi|452206781|ref|YP_007486903.1| - 0.0084 16.3 0.1 0.054 13.6 0.0 2.3 3 1 0 3 3 2 1 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.1 gi|452206781|ref|YP_007486903.1| - 0.016 15.1 0.0 0.54 10.1 0.0 2.5 3 0 0 3 3 2 0 AAA domain AAA_28 PF13521.1 gi|452206781|ref|YP_007486903.1| - 0.021 14.8 0.6 3.2 7.7 0.1 2.5 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.1 gi|452206781|ref|YP_007486903.1| - 0.025 14.4 0.0 0.069 13.0 0.0 1.8 1 0 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|452206781|ref|YP_007486903.1| - 0.027 13.9 0.1 0.067 12.6 0.0 1.5 1 1 0 1 1 1 0 AAA-like domain AAA_19 PF13245.1 gi|452206781|ref|YP_007486903.1| - 0.033 13.9 0.9 0.12 12.1 0.6 2.1 1 1 0 1 1 1 0 Part of AAA domain Arch_ATPase PF01637.13 gi|452206781|ref|YP_007486903.1| - 0.037 13.7 0.0 0.066 12.8 0.0 1.5 1 0 0 1 1 1 0 Archaeal ATPase AAA_16 PF13191.1 gi|452206781|ref|YP_007486903.1| - 0.038 13.9 1.5 0.067 13.1 0.3 2.0 1 1 1 2 2 2 0 AAA ATPase domain DUF258 PF03193.11 gi|452206781|ref|YP_007486903.1| - 0.053 12.7 0.0 0.092 11.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 cobW PF02492.14 gi|452206781|ref|YP_007486903.1| - 0.053 12.9 0.7 0.12 11.8 0.5 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain FtsK_SpoIIIE PF01580.13 gi|452206781|ref|YP_007486903.1| - 0.058 12.8 0.0 0.15 11.5 0.0 1.6 2 0 0 2 2 2 0 FtsK/SpoIIIE family NB-ARC PF00931.17 gi|452206781|ref|YP_007486903.1| - 0.11 11.3 0.6 0.23 10.2 0.0 1.6 2 0 0 2 2 2 0 NB-ARC domain MobB PF03205.9 gi|452206781|ref|YP_007486903.1| - 0.26 10.9 2.1 0.23 11.1 0.2 1.8 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_17 PF13207.1 gi|452206781|ref|YP_007486903.1| - 0.43 11.4 2.8 0.88 10.4 0.7 2.5 1 1 1 2 2 2 0 AAA domain ABC2_membrane_3 PF12698.2 gi|452206782|ref|YP_007486904.1| - 1.2e-05 24.5 9.7 1.2e-05 24.5 6.7 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein CBS PF00571.23 gi|452206783|ref|YP_007486905.1| - 2.7e-28 97.4 2.5 7.8e-15 54.3 0.1 2.1 2 0 0 2 2 2 2 CBS domain zf-FCS PF06467.9 gi|452206784|ref|YP_007486906.1| - 0.024 14.2 1.3 0.055 13.1 0.9 1.5 1 1 0 1 1 1 0 MYM-type Zinc finger with FCS sequence motif DUF3330 PF11809.3 gi|452206784|ref|YP_007486906.1| - 0.044 13.6 0.3 0.058 13.2 0.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3330) RimK PF08443.6 gi|452206785|ref|YP_007486907.1| - 1.1e-27 96.7 0.0 1.6e-27 96.2 0.0 1.2 1 0 0 1 1 1 1 RimK-like ATP-grasp domain Zn_protease PF05618.6 gi|452206785|ref|YP_007486907.1| - 8.3e-11 41.7 0.1 5.6e-08 32.5 0.0 2.3 1 1 1 2 2 2 2 Putative ATP-dependant zinc protease ATP-grasp_4 PF13535.1 gi|452206785|ref|YP_007486907.1| - 1.8e-09 37.5 0.0 3.2e-09 36.7 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain GSH-S_ATP PF02955.11 gi|452206785|ref|YP_007486907.1| - 3.5e-09 36.0 0.0 5.8e-09 35.3 0.0 1.3 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_3 PF02655.9 gi|452206785|ref|YP_007486907.1| - 1e-08 35.2 0.0 1.9e-08 34.3 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|452206785|ref|YP_007486907.1| - 0.0008 18.2 0.0 0.038 12.7 0.0 2.1 2 0 0 2 2 2 1 ATP-grasp in the biosynthetic pathway with Ter operon Asp_protease_2 PF13650.1 gi|452206785|ref|YP_007486907.1| - 0.004 17.6 0.4 0.011 16.2 0.3 1.7 1 0 0 1 1 1 1 Aspartyl protease ATP-grasp PF02222.17 gi|452206785|ref|YP_007486907.1| - 0.12 11.6 0.0 0.23 10.8 0.0 1.4 1 0 0 1 1 1 0 ATP-grasp domain AstE_AspA PF04952.9 gi|452206786|ref|YP_007486908.1| - 9.8e-68 228.1 0.0 1.1e-67 227.9 0.0 1.0 1 0 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family Biotin_lipoyl PF00364.17 gi|452206786|ref|YP_007486908.1| - 0.062 12.9 0.0 0.13 11.9 0.0 1.5 1 0 0 1 1 1 0 Biotin-requiring enzyme Sdh_cyt PF01127.17 gi|452206787|ref|YP_007486909.1| - 1.8e-20 72.9 4.8 2e-20 72.8 3.3 1.0 1 0 0 1 1 1 1 Succinate dehydrogenase/Fumarate reductase transmembrane subunit Ferric_reduct PF01794.14 gi|452206787|ref|YP_007486909.1| - 0.018 15.1 7.8 0.025 14.6 5.4 1.4 1 1 0 1 1 1 0 Ferric reductase like transmembrane component LrgA PF03788.9 gi|452206787|ref|YP_007486909.1| - 0.44 10.2 3.6 0.17 11.6 0.8 1.5 2 0 0 2 2 2 0 LrgA family PgaD PF13994.1 gi|452206787|ref|YP_007486909.1| - 0.67 9.4 3.6 1 8.8 2.5 1.2 1 0 0 1 1 1 0 PgaD-like protein Sdh_cyt PF01127.17 gi|452206788|ref|YP_007486910.1| - 2.9e-11 43.2 5.4 3.4e-11 43.0 3.7 1.1 1 0 0 1 1 1 1 Succinate dehydrogenase/Fumarate reductase transmembrane subunit Tmemb_18A PF09771.4 gi|452206788|ref|YP_007486910.1| - 0.034 14.1 1.4 0.074 13.0 1.0 1.7 1 1 0 1 1 1 0 Transmembrane protein 188 p53-inducible11 PF14936.1 gi|452206788|ref|YP_007486910.1| - 0.037 13.9 0.9 0.05 13.5 0.6 1.2 1 0 0 1 1 1 0 Tumour protein p53-inducible protein 11 Fer2_3 PF13085.1 gi|452206789|ref|YP_007486911.1| - 1.2e-29 102.3 0.0 2.3e-29 101.3 0.0 1.5 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer4_8 PF13183.1 gi|452206789|ref|YP_007486911.1| - 1.7e-10 40.7 4.5 3.8e-10 39.6 3.2 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|452206789|ref|YP_007486911.1| - 4.5e-06 26.9 1.4 1.6e-05 25.1 0.7 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|452206789|ref|YP_007486911.1| - 1.4e-05 25.3 4.8 4e-05 23.8 3.3 1.8 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|452206789|ref|YP_007486911.1| - 1.6e-05 25.0 2.9 5.6e-05 23.3 1.8 2.1 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|452206789|ref|YP_007486911.1| - 0.00042 20.0 7.8 0.0013 18.4 5.4 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|452206789|ref|YP_007486911.1| - 0.00047 20.5 13.6 0.003 17.9 0.1 3.1 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|452206789|ref|YP_007486911.1| - 0.028 15.1 6.5 0.53 11.0 0.6 3.0 3 0 0 3 3 3 0 4Fe-4S double cluster binding domain Fer4_20 PF14691.1 gi|452206789|ref|YP_007486911.1| - 0.031 13.9 7.0 0.66 9.6 0.3 2.7 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_2 PF12797.2 gi|452206789|ref|YP_007486911.1| - 0.068 13.1 1.0 0.068 13.1 0.7 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_6 PF12837.2 gi|452206789|ref|YP_007486911.1| - 2.2 8.2 9.7 2.4 8.2 1.7 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain FAD_binding_2 PF00890.19 gi|452206790|ref|YP_007486912.1| - 1e-121 406.6 7.5 1.4e-121 406.2 5.2 1.2 1 0 0 1 1 1 1 FAD binding domain Succ_DH_flav_C PF02910.15 gi|452206790|ref|YP_007486912.1| - 2.2e-40 137.5 0.3 3.5e-40 136.8 0.2 1.3 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term Pyr_redox_2 PF07992.9 gi|452206790|ref|YP_007486912.1| - 2.3e-09 37.4 3.0 0.00027 20.8 1.6 3.2 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|452206790|ref|YP_007486912.1| - 8.9e-06 24.8 1.6 0.00019 20.4 1.0 2.4 1 1 0 1 1 1 1 FAD dependent oxidoreductase GIDA PF01134.17 gi|452206790|ref|YP_007486912.1| - 0.00029 19.7 3.4 0.0007 18.5 2.4 1.6 1 0 0 1 1 1 1 Glucose inhibited division protein A Thi4 PF01946.12 gi|452206790|ref|YP_007486912.1| - 0.0003 19.9 1.8 0.0068 15.5 0.3 2.8 3 0 0 3 3 3 1 Thi4 family FAD_oxidored PF12831.2 gi|452206790|ref|YP_007486912.1| - 0.00038 19.6 2.7 0.00074 18.7 1.9 1.5 1 0 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|452206790|ref|YP_007486912.1| - 0.00076 18.0 1.2 0.00076 18.0 0.8 2.0 3 0 0 3 3 3 1 HI0933-like protein FAD_binding_3 PF01494.14 gi|452206790|ref|YP_007486912.1| - 0.0089 15.1 0.9 0.016 14.2 0.6 1.4 1 0 0 1 1 1 1 FAD binding domain AlaDh_PNT_C PF01262.16 gi|452206790|ref|YP_007486912.1| - 0.034 13.7 0.1 0.075 12.5 0.0 1.6 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Cupin_2 PF07883.6 gi|452206791|ref|YP_007486913.1| - 1.6e-11 43.5 0.1 2.2e-11 43.0 0.1 1.2 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.14 gi|452206791|ref|YP_007486913.1| - 2.4e-06 27.2 0.0 3e-06 26.9 0.0 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_6 PF12852.2 gi|452206791|ref|YP_007486913.1| - 0.00018 21.2 0.1 0.0002 21.0 0.0 1.1 1 0 0 1 1 1 1 Cupin Cupin_3 PF05899.7 gi|452206791|ref|YP_007486913.1| - 0.00037 19.8 0.1 0.00065 19.0 0.1 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF861) EutQ PF06249.7 gi|452206791|ref|YP_007486913.1| - 0.0012 18.4 0.0 0.0015 18.0 0.0 1.2 1 0 0 1 1 1 1 Ethanolamine utilisation protein EutQ MannoseP_isomer PF01050.13 gi|452206791|ref|YP_007486913.1| - 0.0014 18.2 0.0 0.0017 17.9 0.0 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase Cupin_1 PF00190.17 gi|452206791|ref|YP_007486913.1| - 0.0065 15.9 0.0 0.0085 15.5 0.0 1.2 1 0 0 1 1 1 1 Cupin KduI PF04962.7 gi|452206791|ref|YP_007486913.1| - 0.027 13.5 0.0 0.041 12.9 0.0 1.4 1 0 0 1 1 1 0 KduI/IolB family GPI PF06560.6 gi|452206791|ref|YP_007486913.1| - 0.033 13.2 0.1 0.05 12.6 0.1 1.4 1 1 0 1 1 1 0 Glucose-6-phosphate isomerase (GPI) AraC_binding_2 PF14525.1 gi|452206791|ref|YP_007486913.1| - 0.08 12.4 0.0 0.095 12.2 0.0 1.2 1 0 0 1 1 1 0 AraC-binding-like domain HK PF02110.10 gi|452206792|ref|YP_007486914.1| - 1.1e-66 224.5 6.3 1.2e-66 224.3 4.4 1.0 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family Carb_kinase PF01256.12 gi|452206792|ref|YP_007486914.1| - 0.0049 16.1 4.2 0.0065 15.7 2.9 1.1 1 0 0 1 1 1 1 Carbohydrate kinase NikR_C PF08753.6 gi|452206792|ref|YP_007486914.1| - 0.17 11.8 0.1 0.31 10.9 0.1 1.3 1 0 0 1 1 1 0 NikR C terminal nickel binding domain TMP-TENI PF02581.12 gi|452206793|ref|YP_007486915.1| - 2.1e-61 206.1 1.2 2.5e-61 205.9 0.8 1.1 1 0 0 1 1 1 1 Thiamine monophosphate synthase/TENI ThiG PF05690.9 gi|452206793|ref|YP_007486915.1| - 0.00029 20.0 6.3 0.00033 19.7 2.0 2.3 2 1 0 2 2 2 1 Thiazole biosynthesis protein ThiG NanE PF04131.9 gi|452206793|ref|YP_007486915.1| - 0.015 14.3 4.5 0.23 10.4 1.7 3.4 1 1 2 3 3 3 0 Putative N-acetylmannosamine-6-phosphate epimerase Trp_syntA PF00290.15 gi|452206793|ref|YP_007486915.1| - 0.019 13.4 0.7 0.031 12.8 0.5 1.3 1 0 0 1 1 1 0 Tryptophan synthase alpha chain OMPdecase PF00215.19 gi|452206793|ref|YP_007486915.1| - 0.13 11.6 2.0 0.18 11.1 1.2 1.4 1 1 0 1 1 1 0 Orotidine 5'-phosphate decarboxylase / HUMPS family IMPDH PF00478.20 gi|452206793|ref|YP_007486915.1| - 0.76 8.6 6.3 1.4 7.7 4.4 1.5 1 0 0 1 1 1 0 IMP dehydrogenase / GMP reductase domain PcrB PF01884.12 gi|452206793|ref|YP_007486915.1| - 3.7 6.7 6.3 7 5.8 0.8 2.7 1 1 2 3 3 3 0 PcrB family Plasmid_RAQPRD PF09686.5 gi|452206794|ref|YP_007486916.1| - 0.1 12.7 2.8 0.16 12.0 0.2 2.0 1 1 0 2 2 2 0 Plasmid protein of unknown function (Plasmid_RAQPRD) Hexapep PF00132.19 gi|452206795|ref|YP_007486917.1| - 5e-11 41.5 7.9 5.9e-07 28.7 0.9 3.0 2 1 1 3 3 3 2 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|452206795|ref|YP_007486917.1| - 2.2e-05 23.9 9.1 0.00068 19.1 1.7 2.4 2 0 0 2 2 2 2 Hexapeptide repeat of succinyl-transferase SATase_N PF06426.9 gi|452206795|ref|YP_007486917.1| - 0.022 14.9 0.0 0.034 14.3 0.0 1.2 1 0 0 1 1 1 0 Serine acetyltransferase, N-terminal DUF429 PF04250.8 gi|452206798|ref|YP_007486920.1| - 1e-22 80.4 0.5 1.2e-22 80.2 0.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF429) Na_H_Exchanger PF00999.16 gi|452206799|ref|YP_007486921.1| - 1.7e-33 115.7 49.3 2.3e-33 115.2 34.2 1.1 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family TrkA_N PF02254.13 gi|452206799|ref|YP_007486921.1| - 1.9e-28 98.8 0.3 1.9e-28 98.8 0.2 1.7 2 0 0 2 2 1 1 TrkA-N domain TrkA_C PF02080.16 gi|452206799|ref|YP_007486921.1| - 3.9e-11 42.3 0.3 1.3e-10 40.6 0.1 2.1 2 0 0 2 2 2 1 TrkA-C domain ApbA PF02558.11 gi|452206799|ref|YP_007486921.1| - 0.0003 20.2 0.6 0.0012 18.2 0.0 2.2 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA NAD_binding_7 PF13241.1 gi|452206799|ref|YP_007486921.1| - 0.0015 18.7 0.0 0.005 17.0 0.0 1.9 1 0 0 1 1 1 1 Putative NAD(P)-binding UDPG_MGDP_dh_N PF03721.9 gi|452206799|ref|YP_007486921.1| - 0.0019 17.6 0.0 0.0036 16.7 0.0 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain F420_oxidored PF03807.12 gi|452206799|ref|YP_007486921.1| - 0.0024 18.2 3.1 0.0047 17.3 0.1 2.8 2 1 1 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent XdhC_C PF13478.1 gi|452206799|ref|YP_007486921.1| - 0.0047 17.2 0.0 0.33 11.2 0.0 2.4 2 0 0 2 2 2 1 XdhC Rossmann domain FAD_binding_3 PF01494.14 gi|452206799|ref|YP_007486921.1| - 0.0047 16.0 0.0 0.0074 15.3 0.0 1.3 1 0 0 1 1 1 1 FAD binding domain Saccharop_dh PF03435.13 gi|452206799|ref|YP_007486921.1| - 0.023 13.6 0.1 0.049 12.6 0.1 1.5 1 0 0 1 1 1 0 Saccharopine dehydrogenase 3HCDH_N PF02737.13 gi|452206799|ref|YP_007486921.1| - 0.029 14.0 0.7 0.15 11.6 0.0 2.5 3 0 0 3 3 3 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DrsE_2 PF13686.1 gi|452206799|ref|YP_007486921.1| - 0.074 12.8 0.0 0.13 12.0 0.0 1.4 1 0 0 1 1 1 0 DsrE/DsrF/DrsH-like family GHMP_kinases_N PF00288.21 gi|452206800|ref|YP_007486922.1| - 3.5e-06 26.9 3.2 1.4e-05 25.0 2.2 2.1 1 1 1 2 2 2 1 GHMP kinases N terminal domain Amidohydro_4 PF13147.1 gi|452206800|ref|YP_007486922.1| - 0.00015 21.9 2.5 0.00033 20.8 1.7 1.5 1 1 0 1 1 1 1 Amidohydrolase GHMP_kinases_C PF08544.8 gi|452206800|ref|YP_007486922.1| - 0.00079 19.5 0.0 0.0015 18.6 0.0 1.5 1 0 0 1 1 1 1 GHMP kinases C terminal Nucleo_LEF-12 PF06256.6 gi|452206800|ref|YP_007486922.1| - 0.14 11.8 0.0 0.23 11.1 0.0 1.3 1 0 0 1 1 1 0 Nucleopolyhedrovirus LEF-12 protein DUF2984 PF11203.3 gi|452206800|ref|YP_007486922.1| - 0.33 11.1 2.2 1.2 9.2 1.5 2.2 1 1 0 1 1 1 0 Protein of unknown function (DUF2984) MttA_Hcf106 PF02416.11 gi|452206801|ref|YP_007486923.1| - 6.7e-15 53.9 1.3 6.7e-15 53.9 0.9 1.4 1 1 0 1 1 1 1 mttA/Hcf106 family DUF4604 PF15377.1 gi|452206801|ref|YP_007486923.1| - 7 6.8 10.3 8.3 6.6 7.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4604) MttA_Hcf106 PF02416.11 gi|452206802|ref|YP_007486924.1| - 3.3e-14 51.7 0.0 3.4e-14 51.6 0.0 1.1 1 0 0 1 1 1 1 mttA/Hcf106 family AhpC-TSA PF00578.16 gi|452206803|ref|YP_007486925.1| - 7.7e-34 116.0 0.0 9e-34 115.8 0.0 1.0 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|452206803|ref|YP_007486925.1| - 6.6e-22 77.6 0.0 7.7e-22 77.4 0.0 1.0 1 0 0 1 1 1 1 Redoxin AhpC-TSA_2 PF13911.1 gi|452206803|ref|YP_007486925.1| - 3.7e-05 23.6 0.0 0.0015 18.4 0.0 2.1 2 0 0 2 2 2 1 AhpC/TSA antioxidant enzyme DUF899 PF05988.7 gi|452206803|ref|YP_007486925.1| - 0.11 11.9 0.0 0.14 11.5 0.0 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF899) HD PF01966.17 gi|452206804|ref|YP_007486926.1| - 1e-08 35.1 3.4 2.4e-08 34.0 2.2 1.8 1 1 0 1 1 1 1 HD domain HEM4 PF02602.10 gi|452206805|ref|YP_007486927.1| - 0.079 12.1 0.0 0.12 11.6 0.0 1.2 1 0 0 1 1 1 0 Uroporphyrinogen-III synthase HemD HalX PF08663.5 gi|452206806|ref|YP_007486928.1| - 2.5e-25 88.2 1.7 2.5e-25 88.2 1.2 2.0 2 0 0 2 2 2 1 HalX domain Response_reg PF00072.19 gi|452206806|ref|YP_007486928.1| - 7.6e-20 71.0 1.2 8.3e-20 70.8 0.1 1.6 2 0 0 2 2 2 1 Response regulator receiver domain PilJ PF13675.1 gi|452206806|ref|YP_007486928.1| - 0.019 15.2 0.2 0.032 14.5 0.2 1.3 1 0 0 1 1 1 0 Type IV pili methyl-accepting chemotaxis transducer N-term Uds1 PF15456.1 gi|452206806|ref|YP_007486928.1| - 0.037 14.0 0.4 0.06 13.3 0.3 1.3 1 0 0 1 1 1 0 Up-regulated During Septation IncA PF04156.9 gi|452206806|ref|YP_007486928.1| - 0.078 12.5 0.5 0.1 12.1 0.4 1.2 1 0 0 1 1 1 0 IncA protein SBP PF03110.9 gi|452206807|ref|YP_007486929.1| - 0.029 14.6 2.0 0.14 12.4 1.6 1.8 1 1 1 2 2 2 0 SBP domain Mcm10 PF09332.6 gi|452206807|ref|YP_007486929.1| - 0.14 11.4 0.7 0.15 11.3 0.5 1.1 1 0 0 1 1 1 0 Mcm10 replication factor zinc_ribbon_6 PF14599.1 gi|452206807|ref|YP_007486929.1| - 0.48 10.2 3.1 7.1 6.5 0.2 2.2 1 1 1 2 2 2 0 Zinc-ribbon 5_nucleotid_C PF02872.13 gi|452206808|ref|YP_007486930.1| - 1.8e-21 76.7 0.0 3e-21 76.0 0.0 1.3 1 0 0 1 1 1 1 5'-nucleotidase, C-terminal domain Metallophos_2 PF12850.2 gi|452206808|ref|YP_007486930.1| - 7.6e-05 22.5 0.0 0.00021 21.1 0.0 1.7 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|452206808|ref|YP_007486930.1| - 0.0057 16.0 0.0 0.012 15.0 0.0 1.6 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Usp PF00582.21 gi|452206809|ref|YP_007486931.1| - 6.1e-09 36.1 1.6 1.1e-08 35.3 1.1 1.4 1 1 0 1 1 1 1 Universal stress protein family AP_endonuc_2 PF01261.19 gi|452206809|ref|YP_007486931.1| - 0.044 13.0 0.2 0.061 12.6 0.1 1.4 1 1 0 1 1 1 0 Xylose isomerase-like TIM barrel TPP_enzyme_N PF02776.13 gi|452206810|ref|YP_007486932.1| - 6.5e-35 120.1 0.2 1.6e-34 118.8 0.2 1.7 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.16 gi|452206810|ref|YP_007486932.1| - 5.4e-09 35.8 0.0 2.1e-08 33.8 0.0 2.0 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.17 gi|452206810|ref|YP_007486932.1| - 0.019 14.7 0.0 0.037 13.7 0.0 1.5 1 0 0 1 1 1 0 Thiamine pyrophosphate enzyme, central domain Chorismate_bind PF00425.13 gi|452206811|ref|YP_007486933.1| - 1.4e-75 253.9 0.0 1.7e-75 253.6 0.0 1.1 1 0 0 1 1 1 1 chorismate binding enzyme UPF0058 PF01893.11 gi|452206812|ref|YP_007486934.1| - 1.3e-31 108.5 0.3 1.4e-31 108.3 0.2 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0058 Oxidored_molyb PF00174.14 gi|452206814|ref|YP_007486936.1| - 2.5e-37 127.8 0.0 3e-37 127.6 0.0 1.0 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain Response_reg PF00072.19 gi|452206815|ref|YP_007486937.1| - 1.6e-21 76.4 0.0 2.9e-21 75.5 0.0 1.5 1 0 0 1 1 1 1 Response regulator receiver domain GAF_3 PF13492.1 gi|452206815|ref|YP_007486937.1| - 3.2e-08 33.7 0.0 1.3e-07 31.8 0.0 1.9 2 0 0 2 2 2 1 GAF domain GAF PF01590.21 gi|452206815|ref|YP_007486937.1| - 7.1e-05 22.9 0.0 0.00015 21.9 0.0 1.6 1 0 0 1 1 1 1 GAF domain GAF_2 PF13185.1 gi|452206815|ref|YP_007486937.1| - 0.00025 21.5 0.1 0.00053 20.5 0.0 1.6 1 0 0 1 1 1 1 GAF domain OKR_DC_1_N PF03709.10 gi|452206815|ref|YP_007486937.1| - 0.00057 19.9 0.1 0.0028 17.6 0.0 2.0 2 0 0 2 2 2 1 Orn/Lys/Arg decarboxylase, N-terminal domain ArgK PF03308.11 gi|452206816|ref|YP_007486938.1| - 6.3e-96 320.2 5.2 7.4e-96 320.0 3.6 1.0 1 0 0 1 1 1 1 ArgK protein cobW PF02492.14 gi|452206816|ref|YP_007486938.1| - 3.9e-08 32.9 2.7 6.1e-07 29.0 1.9 2.2 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain ATP_bind_1 PF03029.12 gi|452206816|ref|YP_007486938.1| - 1.4e-05 24.7 0.0 0.00021 20.9 0.0 2.2 2 1 0 2 2 2 1 Conserved hypothetical ATP binding protein SRP54 PF00448.17 gi|452206816|ref|YP_007486938.1| - 1.6e-05 24.4 0.4 6.2e-05 22.5 0.3 1.9 1 1 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_19 PF13245.1 gi|452206816|ref|YP_007486938.1| - 0.00019 21.1 0.6 0.0012 18.5 0.1 2.5 3 0 0 3 3 2 1 Part of AAA domain AAA_10 PF12846.2 gi|452206816|ref|YP_007486938.1| - 0.00021 20.8 0.1 0.00051 19.5 0.0 1.4 1 1 0 1 1 1 1 AAA-like domain ABC_tran PF00005.22 gi|452206816|ref|YP_007486938.1| - 0.00025 21.3 0.1 0.00052 20.3 0.1 1.6 2 0 0 2 2 1 1 ABC transporter NTPase_1 PF03266.10 gi|452206816|ref|YP_007486938.1| - 0.00032 20.4 0.4 0.00089 18.9 0.1 1.8 2 0 0 2 2 2 1 NTPase AAA_16 PF13191.1 gi|452206816|ref|YP_007486938.1| - 0.00056 19.9 0.1 0.0022 18.0 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_30 PF13604.1 gi|452206816|ref|YP_007486938.1| - 0.00057 19.5 0.4 0.0012 18.4 0.0 1.7 2 0 0 2 2 1 1 AAA domain GTP_EFTU PF00009.22 gi|452206816|ref|YP_007486938.1| - 0.0007 19.0 0.0 1.4 8.3 0.0 2.3 2 0 0 2 2 2 2 Elongation factor Tu GTP binding domain AAA_17 PF13207.1 gi|452206816|ref|YP_007486938.1| - 0.00087 20.0 0.5 0.0024 18.6 0.1 1.9 2 0 0 2 2 1 1 AAA domain AAA_29 PF13555.1 gi|452206816|ref|YP_007486938.1| - 0.0017 17.8 0.1 0.0035 16.8 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain TrwB_AAD_bind PF10412.4 gi|452206816|ref|YP_007486938.1| - 0.0017 17.0 0.1 0.0028 16.3 0.0 1.3 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain CbiA PF01656.18 gi|452206816|ref|YP_007486938.1| - 0.002 17.5 0.2 0.004 16.5 0.1 1.5 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_22 PF13401.1 gi|452206816|ref|YP_007486938.1| - 0.0042 17.2 0.2 0.011 15.8 0.0 1.8 2 0 0 2 2 1 1 AAA domain NB-ARC PF00931.17 gi|452206816|ref|YP_007486938.1| - 0.0065 15.3 0.0 0.01 14.6 0.0 1.2 1 0 0 1 1 1 1 NB-ARC domain AAA_25 PF13481.1 gi|452206816|ref|YP_007486938.1| - 0.0069 15.8 0.1 0.023 14.0 0.1 1.9 1 1 1 2 2 2 1 AAA domain AAA_28 PF13521.1 gi|452206816|ref|YP_007486938.1| - 0.0091 15.9 0.2 0.024 14.5 0.1 1.7 1 0 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|452206816|ref|YP_007486938.1| - 0.015 14.4 0.1 0.026 13.6 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function, DUF258 Zeta_toxin PF06414.7 gi|452206816|ref|YP_007486938.1| - 0.015 14.3 0.0 0.027 13.5 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin MobB PF03205.9 gi|452206816|ref|YP_007486938.1| - 0.02 14.5 0.4 0.056 13.1 0.1 1.9 1 1 1 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B KAP_NTPase PF07693.9 gi|452206816|ref|YP_007486938.1| - 0.023 13.6 0.0 0.031 13.2 0.0 1.2 1 0 0 1 1 1 0 KAP family P-loop domain KaiC PF06745.8 gi|452206816|ref|YP_007486938.1| - 0.026 13.6 0.1 0.042 12.9 0.0 1.4 1 0 0 1 1 1 0 KaiC MMR_HSR1 PF01926.18 gi|452206816|ref|YP_007486938.1| - 0.039 13.9 0.1 0.087 12.7 0.1 1.7 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_18 PF13238.1 gi|452206816|ref|YP_007486938.1| - 0.045 14.0 0.2 0.099 12.9 0.2 1.6 1 0 0 1 1 1 0 AAA domain KTI12 PF08433.5 gi|452206816|ref|YP_007486938.1| - 0.049 12.8 0.0 0.09 11.9 0.0 1.4 1 0 0 1 1 1 0 Chromatin associated protein KTI12 PRK PF00485.13 gi|452206816|ref|YP_007486938.1| - 0.053 13.0 0.1 0.093 12.2 0.1 1.4 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family NACHT PF05729.7 gi|452206816|ref|YP_007486938.1| - 0.069 12.8 0.5 0.26 10.9 0.0 2.1 2 0 0 2 2 2 0 NACHT domain AAA_33 PF13671.1 gi|452206816|ref|YP_007486938.1| - 0.11 12.3 0.3 0.27 11.0 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_31 PF13614.1 gi|452206816|ref|YP_007486938.1| - 0.11 12.4 0.0 0.64 9.9 0.0 2.0 2 0 0 2 2 2 0 AAA domain Miro PF08477.8 gi|452206816|ref|YP_007486938.1| - 0.12 12.9 0.1 0.3 11.6 0.0 1.7 1 0 0 1 1 1 0 Miro-like protein AAA_14 PF13173.1 gi|452206816|ref|YP_007486938.1| - 0.16 11.8 0.0 0.38 10.6 0.0 1.6 2 0 0 2 2 1 0 AAA domain DUF1470 PF07336.6 gi|452206816|ref|YP_007486938.1| - 0.54 10.5 4.6 0.13 12.5 0.6 2.0 2 0 0 2 2 1 0 Protein of unknown function (DUF1470) B12-binding PF02310.14 gi|452206817|ref|YP_007486939.1| - 2.1e-21 76.0 0.5 2.5e-21 75.7 0.3 1.1 1 0 0 1 1 1 1 B12 binding domain FIST PF08495.5 gi|452206817|ref|YP_007486939.1| - 0.018 14.2 0.1 0.023 13.8 0.1 1.1 1 0 0 1 1 1 0 FIST N domain XPG_I PF00867.13 gi|452206818|ref|YP_007486940.1| - 1e-23 83.1 0.0 2.3e-23 82.0 0.0 1.6 1 0 0 1 1 1 1 XPG I-region XPG_N PF00752.12 gi|452206818|ref|YP_007486940.1| - 1.5e-11 44.4 0.0 2.5e-11 43.7 0.0 1.3 1 0 0 1 1 1 1 XPG N-terminal domain 5_3_exonuc PF01367.15 gi|452206818|ref|YP_007486940.1| - 1.4e-05 25.2 0.0 2.9e-05 24.2 0.0 1.5 1 0 0 1 1 1 1 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc_N PF02739.11 gi|452206818|ref|YP_007486940.1| - 0.0024 17.2 0.0 0.0049 16.2 0.0 1.6 1 1 0 1 1 1 1 5'-3' exonuclease, N-terminal resolvase-like domain HHH_5 PF14520.1 gi|452206818|ref|YP_007486940.1| - 0.092 12.9 0.1 0.3 11.2 0.1 1.9 1 1 0 1 1 1 0 Helix-hairpin-helix domain BolA PF01722.13 gi|452206819|ref|YP_007486941.1| - 1.7e-19 69.5 0.0 2.1e-19 69.2 0.0 1.1 1 0 0 1 1 1 1 BolA-like protein zf-HC2 PF13490.1 gi|452206819|ref|YP_007486941.1| - 0.12 12.3 0.5 0.26 11.2 0.4 1.6 1 0 0 1 1 1 0 Putative zinc-finger Lyase_1 PF00206.15 gi|452206820|ref|YP_007486942.1| - 3.7e-102 341.6 0.1 5.3e-102 341.1 0.1 1.2 1 0 0 1 1 1 1 Lyase FumaraseC_C PF10415.4 gi|452206820|ref|YP_007486942.1| - 3.1e-24 84.7 0.5 3.1e-24 84.7 0.3 2.2 2 0 0 2 2 2 1 Fumarase C C-terminus PadR PF03551.9 gi|452206821|ref|YP_007486943.1| - 1.9e-06 27.5 0.0 3.4e-06 26.7 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family GatB_N PF02934.10 gi|452206822|ref|YP_007486944.1| - 1.8e-72 243.6 0.0 2.8e-72 242.9 0.0 1.2 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.13 gi|452206822|ref|YP_007486944.1| - 3e-22 78.9 0.0 6.4e-22 77.8 0.0 1.6 1 0 0 1 1 1 1 GatB domain GAD PF02938.9 gi|452206822|ref|YP_007486944.1| - 1.1e-11 44.6 0.0 2.1e-11 43.8 0.0 1.5 1 0 0 1 1 1 1 GAD domain YqeY PF09424.5 gi|452206822|ref|YP_007486944.1| - 0.013 15.4 0.2 0.028 14.2 0.1 1.6 1 0 0 1 1 1 0 Yqey-like protein Arginase PF00491.16 gi|452206823|ref|YP_007486945.1| - 4.3e-53 180.3 0.8 5.2e-53 180.1 0.6 1.1 1 0 0 1 1 1 1 Arginase family Glyco_trans_4_4 PF13579.1 gi|452206823|ref|YP_007486945.1| - 2.4 8.3 10.2 0.12 12.5 0.6 2.5 1 1 1 2 2 2 0 Glycosyl transferase 4-like domain eIF-5a PF01287.15 gi|452206824|ref|YP_007486946.1| - 1.2e-05 25.1 0.7 2.2e-05 24.3 0.5 1.5 1 0 0 1 1 1 1 Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold EFP_N PF08207.7 gi|452206824|ref|YP_007486946.1| - 0.0032 17.3 0.1 0.014 15.2 0.0 1.9 2 0 0 2 2 2 1 Elongation factor P (EF-P) KOW-like domain MCH PF02289.11 gi|452206825|ref|YP_007486947.1| - 1.4e-82 277.2 0.3 1.6e-82 277.0 0.2 1.0 1 0 0 1 1 1 1 Cyclohydrolase (MCH) CBS PF00571.23 gi|452206826|ref|YP_007486948.1| - 1.4e-30 104.8 5.4 1e-15 57.2 0.9 2.1 2 0 0 2 2 2 2 CBS domain AAA_22 PF13401.1 gi|452206826|ref|YP_007486948.1| - 0.14 12.2 0.0 0.19 11.8 0.0 1.1 1 0 0 1 1 1 0 AAA domain EamA PF00892.15 gi|452206827|ref|YP_007486949.1| - 2.7e-30 104.9 19.5 1.5e-16 60.6 5.4 2.1 2 0 0 2 2 2 2 EamA-like transporter family TPT PF03151.11 gi|452206827|ref|YP_007486949.1| - 1.5e-06 27.9 14.2 0.00037 20.1 3.9 2.8 2 1 0 2 2 2 2 Triose-phosphate Transporter family EmrE PF13536.1 gi|452206827|ref|YP_007486949.1| - 6.5e-06 26.3 29.2 8.6e-05 22.7 5.1 3.9 2 2 2 4 4 4 2 Multidrug resistance efflux transporter Mg_trans_NIPA PF05653.9 gi|452206827|ref|YP_007486949.1| - 0.18 10.6 2.8 0.25 10.2 0.2 2.3 2 1 0 2 2 2 0 Magnesium transporter NIPA PSI_PsaJ PF01701.13 gi|452206827|ref|YP_007486949.1| - 0.7 9.6 3.8 0.81 9.4 0.3 2.9 2 0 0 2 2 2 0 Photosystem I reaction centre subunit IX / PsaJ UPF0546 PF10639.4 gi|452206827|ref|YP_007486949.1| - 0.86 9.4 5.5 8.2 6.2 0.5 2.6 2 0 0 2 2 2 0 Uncharacterised protein family UPF0546 4HBT_2 PF13279.1 gi|452206830|ref|YP_007486952.1| - 9e-16 58.4 0.0 1.1e-15 58.1 0.0 1.0 1 0 0 1 1 1 1 Thioesterase-like superfamily 4HBT PF03061.17 gi|452206830|ref|YP_007486952.1| - 1.4e-12 47.5 0.1 1.8e-12 47.1 0.0 1.2 1 0 0 1 1 1 1 Thioesterase superfamily Acyl-ACP_TE PF01643.12 gi|452206830|ref|YP_007486952.1| - 2.1e-05 23.6 0.0 4.4e-05 22.5 0.0 1.6 1 1 1 2 2 2 1 Acyl-ACP thioesterase Nsp1_C PF05064.8 gi|452206831|ref|YP_007486953.1| - 0.019 14.5 1.3 0.037 13.6 0.9 1.4 1 0 0 1 1 1 0 Nsp1-like C-terminal region DUF812 PF05667.6 gi|452206831|ref|YP_007486953.1| - 0.028 12.9 1.7 0.041 12.3 1.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF812) bPH_3 PF14470.1 gi|452206831|ref|YP_007486953.1| - 0.047 13.9 0.0 0.25 11.6 0.0 2.0 1 1 1 2 2 2 0 Bacterial PH domain MbeD_MobD PF04899.7 gi|452206831|ref|YP_007486953.1| - 0.1 12.5 0.4 0.35 10.7 0.0 2.0 2 0 0 2 2 2 0 MbeD/MobD like DUF2688 PF10892.3 gi|452206832|ref|YP_007486954.1| - 0.074 12.7 0.2 0.19 11.3 0.2 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF2688) SNARE_assoc PF09335.6 gi|452206833|ref|YP_007486955.1| - 3.3e-17 62.8 5.6 3.3e-17 62.8 3.9 1.7 2 0 0 2 2 2 1 SNARE associated Golgi protein zf-Mss51 PF13824.1 gi|452206834|ref|YP_007486956.1| - 0.092 12.6 7.0 0.12 12.2 4.8 1.1 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 DUF2043 PF09740.4 gi|452206834|ref|YP_007486956.1| - 0.27 11.3 1.6 0.28 11.2 1.1 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2043) PADR1 PF08063.7 gi|452206834|ref|YP_007486956.1| - 2.1 7.7 5.1 1.2 8.5 2.6 1.3 1 1 0 1 1 1 0 PADR1 (NUC008) domain Ribonuc_red_lgC PF02867.10 gi|452206835|ref|YP_007486957.1| - 3.6e-144 481.2 0.0 3.8e-80 269.9 0.0 2.1 2 0 0 2 2 2 2 Ribonucleotide reductase, barrel domain TSCPD PF12637.2 gi|452206835|ref|YP_007486957.1| - 2.3e-27 94.7 0.0 6.3e-27 93.3 0.0 1.8 1 0 0 1 1 1 1 TSCPD domain Ribonuc_red_lgN PF00317.16 gi|452206835|ref|YP_007486957.1| - 7.4e-25 86.5 0.0 3e-24 84.6 0.0 2.1 1 0 0 1 1 1 1 Ribonucleotide reductase, all-alpha domain LAGLIDADG_3 PF14528.1 gi|452206835|ref|YP_007486957.1| - 7.4e-22 77.3 0.0 3e-21 75.4 0.0 2.2 1 0 0 1 1 1 1 LAGLIDADG-like domain Intein_splicing PF14890.1 gi|452206835|ref|YP_007486957.1| - 4.2e-16 58.7 0.0 2.6e-14 52.8 0.0 2.3 1 1 0 1 1 1 1 Intein splicing domain Hint_2 PF13403.1 gi|452206835|ref|YP_007486957.1| - 0.055 13.4 0.2 8 6.3 0.0 2.7 2 0 0 2 2 2 0 Hint domain LAGLIDADG_WhiA PF14527.1 gi|452206835|ref|YP_007486957.1| - 0.14 12.0 0.0 0.44 10.4 0.0 1.9 1 0 0 1 1 1 0 WhiA LAGLIDADG-like domain Cys_rich_CPCC PF14206.1 gi|452206835|ref|YP_007486957.1| - 1.8 8.2 6.2 44 3.7 3.7 2.9 2 0 0 2 2 2 0 Cysteine-rich CPCC GATase PF00117.23 gi|452206836|ref|YP_007486958.1| - 4.1e-44 150.3 0.0 4.5e-44 150.1 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|452206836|ref|YP_007486958.1| - 4.1e-07 29.6 0.0 3.2e-06 26.7 0.0 2.0 1 1 0 1 1 1 1 Peptidase C26 EamA PF00892.15 gi|452206837|ref|YP_007486959.1| - 2.7e-30 104.9 19.5 1.5e-16 60.6 5.4 2.1 2 0 0 2 2 2 2 EamA-like transporter family TPT PF03151.11 gi|452206837|ref|YP_007486959.1| - 1.5e-06 27.9 14.2 0.00037 20.1 3.9 2.8 2 1 0 2 2 2 2 Triose-phosphate Transporter family EmrE PF13536.1 gi|452206837|ref|YP_007486959.1| - 6.5e-06 26.3 29.2 8.6e-05 22.7 5.1 3.9 2 2 2 4 4 4 2 Multidrug resistance efflux transporter Mg_trans_NIPA PF05653.9 gi|452206837|ref|YP_007486959.1| - 0.18 10.6 2.8 0.25 10.2 0.2 2.3 2 1 0 2 2 2 0 Magnesium transporter NIPA PSI_PsaJ PF01701.13 gi|452206837|ref|YP_007486959.1| - 0.7 9.6 3.8 0.81 9.4 0.3 2.9 2 0 0 2 2 2 0 Photosystem I reaction centre subunit IX / PsaJ UPF0546 PF10639.4 gi|452206837|ref|YP_007486959.1| - 0.86 9.4 5.5 8.2 6.2 0.5 2.6 2 0 0 2 2 2 0 Uncharacterised protein family UPF0546 4HBT_2 PF13279.1 gi|452206840|ref|YP_007486962.1| - 9e-16 58.4 0.0 1.1e-15 58.1 0.0 1.0 1 0 0 1 1 1 1 Thioesterase-like superfamily 4HBT PF03061.17 gi|452206840|ref|YP_007486962.1| - 1.4e-12 47.5 0.1 1.8e-12 47.1 0.0 1.2 1 0 0 1 1 1 1 Thioesterase superfamily Acyl-ACP_TE PF01643.12 gi|452206840|ref|YP_007486962.1| - 2.1e-05 23.6 0.0 4.4e-05 22.5 0.0 1.6 1 1 1 2 2 2 1 Acyl-ACP thioesterase Nsp1_C PF05064.8 gi|452206841|ref|YP_007486963.1| - 0.019 14.5 1.3 0.037 13.6 0.9 1.4 1 0 0 1 1 1 0 Nsp1-like C-terminal region DUF812 PF05667.6 gi|452206841|ref|YP_007486963.1| - 0.028 12.9 1.7 0.041 12.3 1.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF812) bPH_3 PF14470.1 gi|452206841|ref|YP_007486963.1| - 0.047 13.9 0.0 0.25 11.6 0.0 2.0 1 1 1 2 2 2 0 Bacterial PH domain MbeD_MobD PF04899.7 gi|452206841|ref|YP_007486963.1| - 0.1 12.5 0.4 0.35 10.7 0.0 2.0 2 0 0 2 2 2 0 MbeD/MobD like DUF2688 PF10892.3 gi|452206842|ref|YP_007486964.1| - 0.074 12.7 0.2 0.19 11.3 0.2 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF2688) SNARE_assoc PF09335.6 gi|452206843|ref|YP_007486965.1| - 3.3e-17 62.8 5.6 3.3e-17 62.8 3.9 1.7 2 0 0 2 2 2 1 SNARE associated Golgi protein zf-Mss51 PF13824.1 gi|452206844|ref|YP_007486966.1| - 0.092 12.6 7.0 0.12 12.2 4.8 1.1 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 DUF2043 PF09740.4 gi|452206844|ref|YP_007486966.1| - 0.27 11.3 1.6 0.28 11.2 1.1 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2043) PADR1 PF08063.7 gi|452206844|ref|YP_007486966.1| - 2.1 7.7 5.1 1.2 8.5 2.6 1.3 1 1 0 1 1 1 0 PADR1 (NUC008) domain GATase PF00117.23 gi|452206845|ref|YP_007486967.1| - 4.1e-44 150.3 0.0 4.5e-44 150.1 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|452206845|ref|YP_007486967.1| - 4.1e-07 29.6 0.0 3.2e-06 26.7 0.0 2.0 1 1 0 1 1 1 1 Peptidase C26 Chorismate_bind PF00425.13 gi|452206846|ref|YP_007486968.1| - 1.1e-89 300.1 0.0 1.6e-89 299.6 0.0 1.2 1 0 0 1 1 1 1 chorismate binding enzyme Anth_synt_I_N PF04715.8 gi|452206846|ref|YP_007486968.1| - 4.3e-20 72.1 0.2 1.7e-18 67.0 0.0 3.1 3 0 0 3 3 3 1 Anthranilate synthase component I, N terminal region PRAI PF00697.17 gi|452206847|ref|YP_007486969.1| - 6.4e-37 127.0 0.0 7.2e-37 126.8 0.0 1.0 1 0 0 1 1 1 1 N-(5'phosphoribosyl)anthranilate (PRA) isomerase FMN_dh PF01070.13 gi|452206847|ref|YP_007486969.1| - 7.8e-05 21.6 0.0 0.00014 20.8 0.0 1.4 1 1 0 1 1 1 1 FMN-dependent dehydrogenase TMP-TENI PF02581.12 gi|452206847|ref|YP_007486969.1| - 0.0015 17.7 0.3 0.0097 15.0 0.0 2.3 2 1 0 2 2 2 1 Thiamine monophosphate synthase/TENI Amidohydro_2 PF04909.9 gi|452206847|ref|YP_007486969.1| - 0.058 12.9 0.7 0.12 11.8 0.1 1.5 1 1 0 1 1 1 0 Amidohydrolase Repressor_Mnt PF11423.3 gi|452206847|ref|YP_007486969.1| - 0.16 11.3 0.3 0.43 9.9 0.2 1.8 1 0 0 1 1 1 0 Regulatory protein Mnt HSP33 PF01430.14 gi|452206847|ref|YP_007486969.1| - 0.18 10.9 0.0 0.25 10.4 0.0 1.1 1 0 0 1 1 1 0 Hsp33 protein Glycos_transf_3 PF00591.16 gi|452206848|ref|YP_007486970.1| - 3.2e-98 328.1 2.2 3.9e-98 327.8 1.5 1.1 1 0 0 1 1 1 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.12 gi|452206848|ref|YP_007486970.1| - 5e-16 58.0 0.6 5e-16 58.0 0.4 2.2 2 1 0 2 2 2 1 Glycosyl transferase family, helical bundle domain DUF2717 PF10911.3 gi|452206848|ref|YP_007486970.1| - 0.033 13.6 0.0 0.089 12.3 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF2717) CheC PF04509.7 gi|452206848|ref|YP_007486970.1| - 0.068 12.9 0.3 0.21 11.3 0.0 2.0 2 0 0 2 2 2 0 CheC-like family TauE PF01925.14 gi|452206849|ref|YP_007486971.1| - 0.032 13.6 14.6 0.048 13.1 10.1 1.2 1 0 0 1 1 1 0 Sulfite exporter TauE/SafE PsaL PF02605.10 gi|452206849|ref|YP_007486971.1| - 0.042 13.3 0.7 0.076 12.5 0.5 1.5 1 1 0 1 1 1 0 Photosystem I reaction centre subunit XI Histidinol_dh PF00815.15 gi|452206849|ref|YP_007486971.1| - 0.072 11.7 0.9 0.094 11.3 0.6 1.1 1 0 0 1 1 1 0 Histidinol dehydrogenase DUF202 PF02656.10 gi|452206849|ref|YP_007486971.1| - 2.6 8.3 10.8 0.88 9.8 0.2 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF202) Bax1-I PF01027.15 gi|452206849|ref|YP_007486971.1| - 8.5 5.9 12.3 5 6.6 0.3 2.0 2 0 0 2 2 2 0 Inhibitor of apoptosis-promoting Bax1 PhoU PF01895.14 gi|452206850|ref|YP_007486972.1| - 1.4e-05 25.4 2.2 0.0007 19.9 0.0 3.1 2 2 1 3 3 3 1 PhoU domain HTH_Crp_2 PF13545.1 gi|452206850|ref|YP_007486972.1| - 0.00022 20.9 0.0 0.0031 17.2 0.0 2.4 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain MarR_2 PF12802.2 gi|452206850|ref|YP_007486972.1| - 0.003 17.1 0.1 0.013 15.1 0.0 2.1 2 0 0 2 2 2 1 MarR family HTH_24 PF13412.1 gi|452206850|ref|YP_007486972.1| - 0.028 13.8 0.1 0.078 12.3 0.0 1.8 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding Rrf2 PF02082.15 gi|452206850|ref|YP_007486972.1| - 0.035 14.2 0.1 0.13 12.3 0.0 1.9 2 0 0 2 2 2 0 Transcriptional regulator HxlR PF01638.12 gi|452206850|ref|YP_007486972.1| - 0.043 13.4 0.0 0.1 12.2 0.0 1.6 1 0 0 1 1 1 0 HxlR-like helix-turn-helix HTH_3 PF01381.17 gi|452206850|ref|YP_007486972.1| - 0.074 12.9 0.1 0.35 10.7 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix Virulence_RhuM PF13310.1 gi|452206850|ref|YP_007486972.1| - 0.08 11.9 0.0 0.48 9.3 0.0 2.0 2 0 0 2 2 2 0 Virulence protein RhuM family DUF977 PF06163.6 gi|452206850|ref|YP_007486972.1| - 0.14 11.9 0.0 0.27 10.9 0.0 1.4 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF977) HTH_31 PF13560.1 gi|452206850|ref|YP_007486972.1| - 0.14 12.3 2.8 24 5.2 0.0 3.9 4 1 0 4 4 4 0 Helix-turn-helix domain PhoU PF01895.14 gi|452206851|ref|YP_007486973.1| - 1.2e-22 80.1 9.8 1.7e-15 57.1 1.6 2.6 2 0 0 2 2 2 2 PhoU domain PhoU_div PF01865.11 gi|452206851|ref|YP_007486973.1| - 4.1e-05 22.8 1.0 6.8e-05 22.1 0.7 1.3 1 0 0 1 1 1 1 Protein of unknown function DUF47 Antitoxin-MazE PF04014.13 gi|452206851|ref|YP_007486973.1| - 0.00018 21.1 0.0 0.00038 20.1 0.0 1.5 1 0 0 1 1 1 1 Antidote-toxin recognition MazE HTH_5 PF01022.15 gi|452206852|ref|YP_007486974.1| - 6.3e-14 51.3 0.1 1.1e-13 50.6 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|452206852|ref|YP_007486974.1| - 8.6e-14 51.0 0.4 1.6e-13 50.2 0.3 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|452206852|ref|YP_007486974.1| - 0.0002 20.9 0.0 0.00027 20.5 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_34 PF13601.1 gi|452206852|ref|YP_007486974.1| - 0.01 15.8 0.0 0.017 15.1 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_CodY PF08222.6 gi|452206852|ref|YP_007486974.1| - 0.068 12.5 0.0 0.13 11.6 0.0 1.5 1 1 0 1 1 1 0 CodY helix-turn-helix domain DUF318 PF03773.8 gi|452206853|ref|YP_007486975.1| - 8.5e-56 189.1 9.9 1.1e-55 188.8 6.8 1.1 1 0 0 1 1 1 1 Predicted permease BacA PF02673.13 gi|452206853|ref|YP_007486975.1| - 0.0043 16.2 1.7 0.0043 16.2 1.2 2.4 2 0 0 2 2 2 1 Bacitracin resistance protein BacA HTH_20 PF12840.2 gi|452206854|ref|YP_007486976.1| - 3.1e-13 49.3 0.5 7.2e-13 48.1 0.1 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|452206854|ref|YP_007486976.1| - 2e-12 46.5 0.1 3.4e-12 45.8 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_27 PF13463.1 gi|452206854|ref|YP_007486976.1| - 3.9e-06 27.0 0.0 6.4e-06 26.4 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR PF01047.17 gi|452206854|ref|YP_007486976.1| - 4.5e-05 23.0 0.0 8.1e-05 22.2 0.0 1.3 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|452206854|ref|YP_007486976.1| - 8.6e-05 22.1 0.0 0.00022 20.8 0.0 1.6 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_34 PF13601.1 gi|452206854|ref|YP_007486976.1| - 0.00024 21.0 0.0 0.00043 20.2 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|452206854|ref|YP_007486976.1| - 0.00079 19.0 0.0 0.0016 18.0 0.0 1.6 1 0 0 1 1 1 1 MarR family GntR PF00392.16 gi|452206854|ref|YP_007486976.1| - 0.001 18.4 0.0 0.0019 17.5 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family PaaX PF07848.7 gi|452206854|ref|YP_007486976.1| - 0.0078 16.1 0.0 0.025 14.5 0.0 1.8 2 0 0 2 2 2 1 PaaX-like protein DUF4423 PF14394.1 gi|452206854|ref|YP_007486976.1| - 0.015 14.8 0.0 0.021 14.3 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) Penicillinase_R PF03965.11 gi|452206854|ref|YP_007486976.1| - 0.018 15.1 0.0 0.032 14.3 0.0 1.5 1 0 0 1 1 1 0 Penicillinase repressor HTH_11 PF08279.7 gi|452206854|ref|YP_007486976.1| - 0.027 14.0 0.0 0.13 11.9 0.0 2.0 2 0 0 2 2 2 0 HTH domain PAX PF00292.13 gi|452206854|ref|YP_007486976.1| - 0.03 14.0 0.0 0.046 13.4 0.0 1.2 1 0 0 1 1 1 0 'Paired box' domain HTH_24 PF13412.1 gi|452206854|ref|YP_007486976.1| - 0.044 13.1 0.0 0.27 10.6 0.0 2.3 1 1 1 2 2 2 0 Winged helix-turn-helix DNA-binding Rrf2 PF02082.15 gi|452206854|ref|YP_007486976.1| - 0.046 13.8 0.0 0.075 13.1 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator Fe_dep_repress PF01325.14 gi|452206854|ref|YP_007486976.1| - 0.054 13.4 0.0 0.094 12.6 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain MatE PF01554.13 gi|452206855|ref|YP_007486977.1| - 2.2e-42 144.4 31.2 1.9e-23 82.8 5.8 2.4 2 0 0 2 2 2 2 MatE MVIN PF03023.9 gi|452206855|ref|YP_007486977.1| - 3.7e-08 32.2 31.6 1.1e-07 30.6 10.5 2.1 1 1 0 2 2 2 2 MviN-like protein Polysacc_synt_C PF14667.1 gi|452206855|ref|YP_007486977.1| - 2.7e-06 27.2 9.1 2.7e-06 27.2 6.3 4.2 4 1 1 5 5 5 2 Polysaccharide biosynthesis C-terminal domain EcsB PF05975.7 gi|452206855|ref|YP_007486977.1| - 0.14 10.5 1.3 0.28 9.5 0.0 1.9 2 0 0 2 2 2 0 Bacterial ABC transporter protein EcsB ADH_N PF08240.7 gi|452206856|ref|YP_007486978.1| - 1.7e-28 98.5 2.2 1.7e-28 98.5 1.6 1.7 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|452206856|ref|YP_007486978.1| - 6.6e-23 80.6 0.2 1e-22 80.0 0.1 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.1 gi|452206856|ref|YP_007486978.1| - 9.2e-06 26.5 0.1 2.1e-05 25.4 0.1 1.7 1 0 0 1 1 1 1 Zinc-binding dehydrogenase NCD3G PF07562.9 gi|452206856|ref|YP_007486978.1| - 0.036 13.7 1.2 0.071 12.8 0.8 1.4 1 0 0 1 1 1 0 Nine Cysteines Domain of family 3 GPCR NAD_binding_10 PF13460.1 gi|452206856|ref|YP_007486978.1| - 0.069 13.1 1.2 0.12 12.3 0.8 1.4 1 0 0 1 1 1 0 NADH(P)-binding HHH_5 PF14520.1 gi|452206856|ref|YP_007486978.1| - 0.096 12.8 0.2 1.6 8.9 0.1 2.7 2 1 0 2 2 2 0 Helix-hairpin-helix domain Hydantoinase_A PF01968.13 gi|452206857|ref|YP_007486979.1| - 1.4e-88 296.7 18.8 2.9e-88 295.7 7.6 2.3 2 0 0 2 2 2 2 Hydantoinase/oxoprolinase Hydant_A_N PF05378.8 gi|452206857|ref|YP_007486979.1| - 5.3e-48 162.8 4.8 1e-46 158.6 0.0 3.6 4 0 0 4 4 4 1 Hydantoinase/oxoprolinase N-terminal region MutL PF13941.1 gi|452206857|ref|YP_007486979.1| - 0.18 10.0 9.5 0.28 9.4 0.6 3.2 3 0 0 3 3 3 0 MutL protein DUF550 PF04447.7 gi|452206857|ref|YP_007486979.1| - 0.19 11.3 0.0 0.38 10.3 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF550) Hydantoinase_B PF02538.9 gi|452206858|ref|YP_007486980.1| - 2.2e-152 508.0 0.0 2.5e-152 507.7 0.0 1.0 1 0 0 1 1 1 1 Hydantoinase B/oxoprolinase AhpC-TSA PF00578.16 gi|452206859|ref|YP_007486981.1| - 1.1e-30 105.8 0.0 1.3e-30 105.6 0.0 1.0 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|452206859|ref|YP_007486981.1| - 2.7e-23 82.1 0.0 3.1e-23 81.9 0.0 1.0 1 0 0 1 1 1 1 Redoxin AhpC-TSA_2 PF13911.1 gi|452206859|ref|YP_007486981.1| - 0.043 13.7 0.1 2.4 8.0 0.0 2.1 2 0 0 2 2 2 0 AhpC/TSA antioxidant enzyme DUF899 PF05988.7 gi|452206859|ref|YP_007486981.1| - 0.065 12.6 0.0 0.081 12.3 0.0 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF899) DUF3103 PF11301.3 gi|452206859|ref|YP_007486981.1| - 0.11 11.1 0.0 0.15 10.7 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3103) DsbD_2 PF13386.1 gi|452206861|ref|YP_007486983.1| - 1.7e-44 151.9 16.0 2.1e-44 151.6 11.1 1.1 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region 7TMR-DISM_7TM PF07695.6 gi|452206862|ref|YP_007486984.1| - 1.1 8.9 7.7 1.3 8.6 5.3 1.1 1 0 0 1 1 1 0 7TM diverse intracellular signalling DUF1212 PF06738.7 gi|452206862|ref|YP_007486984.1| - 6.6 6.1 6.9 7.4 5.9 4.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1212) RHH_1 PF01402.16 gi|452206863|ref|YP_007486985.1| - 0.00037 20.2 0.1 0.00065 19.4 0.1 1.4 1 1 0 1 1 1 1 Ribbon-helix-helix protein, copG family Bac_luciferase PF00296.15 gi|452206864|ref|YP_007486986.1| - 1.3e-47 162.4 5.3 1.5e-47 162.1 3.7 1.1 1 0 0 1 1 1 1 Luciferase-like monooxygenase Radical_SAM PF04055.16 gi|452206864|ref|YP_007486986.1| - 0.12 12.5 0.0 3.9 7.6 0.0 2.2 2 0 0 2 2 2 0 Radical SAM superfamily UCR_Fe-S_N PF10399.4 gi|452206865|ref|YP_007486987.1| - 0.013 14.6 1.5 0.035 13.2 1.0 1.8 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal TAT_signal PF10518.4 gi|452206867|ref|YP_007486989.1| - 0.006 16.4 3.0 0.006 16.4 2.1 2.2 2 0 0 2 2 2 1 TAT (twin-arginine translocation) pathway signal sequence Inhibitor_I68 PF10468.4 gi|452206867|ref|YP_007486989.1| - 0.067 13.3 0.0 0.54 10.4 0.0 2.2 2 0 0 2 2 2 0 Carboxypeptidase inhibitor I68 HTH_24 PF13412.1 gi|452206868|ref|YP_007486990.1| - 5.9e-12 44.7 0.1 1e-11 43.9 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding AsnC_trans_reg PF01037.16 gi|452206868|ref|YP_007486990.1| - 1.1e-11 44.2 0.1 1.7e-11 43.6 0.1 1.3 1 0 0 1 1 1 1 AsnC family HTH_AsnC-type PF13404.1 gi|452206868|ref|YP_007486990.1| - 1.1e-08 34.4 0.1 1.7e-08 33.8 0.0 1.3 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.7 gi|452206868|ref|YP_007486990.1| - 2.9e-07 30.0 0.0 5.6e-07 29.1 0.0 1.5 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.2 gi|452206868|ref|YP_007486990.1| - 1.1e-05 25.1 0.0 2.3e-05 24.1 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_DeoR PF08220.7 gi|452206868|ref|YP_007486990.1| - 2.2e-05 23.8 0.1 0.00015 21.2 0.0 2.0 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain HTH_5 PF01022.15 gi|452206868|ref|YP_007486990.1| - 5.5e-05 22.7 0.1 0.0001 21.9 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|452206868|ref|YP_007486990.1| - 0.00013 21.5 0.1 0.00033 20.3 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB GntR PF00392.16 gi|452206868|ref|YP_007486990.1| - 0.00062 19.1 0.0 0.0012 18.1 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family MarR PF01047.17 gi|452206868|ref|YP_007486990.1| - 0.0029 17.2 0.0 0.0075 15.9 0.0 1.7 1 0 0 1 1 1 1 MarR family Fe_dep_repress PF01325.14 gi|452206868|ref|YP_007486990.1| - 0.0086 15.9 0.1 0.031 14.2 0.0 1.9 2 0 0 2 2 1 1 Iron dependent repressor, N-terminal DNA binding domain MarR_2 PF12802.2 gi|452206868|ref|YP_007486990.1| - 0.009 15.6 0.0 0.074 12.7 0.0 2.0 2 0 0 2 2 2 1 MarR family HTH_28 PF13518.1 gi|452206868|ref|YP_007486990.1| - 0.012 15.6 0.0 0.022 14.7 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_23 PF13384.1 gi|452206868|ref|YP_007486990.1| - 0.017 14.7 0.0 0.035 13.7 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain HTH_38 PF13936.1 gi|452206868|ref|YP_007486990.1| - 0.022 14.2 0.0 0.05 13.1 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_10 PF04967.7 gi|452206868|ref|YP_007486990.1| - 0.024 14.1 0.0 0.051 13.1 0.0 1.5 1 0 0 1 1 1 0 HTH DNA binding domain Mga PF05043.8 gi|452206868|ref|YP_007486990.1| - 0.028 14.7 0.0 0.082 13.1 0.0 1.7 2 0 0 2 2 2 0 Mga helix-turn-helix domain HTH_34 PF13601.1 gi|452206868|ref|YP_007486990.1| - 0.056 13.4 0.0 0.13 12.2 0.0 1.6 2 0 0 2 2 1 0 Winged helix DNA-binding domain HTH_Mga PF08280.6 gi|452206868|ref|YP_007486990.1| - 0.057 13.1 0.0 0.11 12.2 0.0 1.4 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain GYD PF08734.6 gi|452206868|ref|YP_007486990.1| - 0.084 12.6 0.1 0.16 11.7 0.0 1.5 1 0 0 1 1 1 0 GYD domain HTH_27 PF13463.1 gi|452206868|ref|YP_007486990.1| - 0.089 13.1 0.3 0.38 11.1 0.0 2.1 3 0 0 3 3 3 0 Winged helix DNA-binding domain HTH_36 PF13730.1 gi|452206868|ref|YP_007486990.1| - 0.12 12.5 0.0 0.18 11.9 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain DUF290 PF01060.18 gi|452206869|ref|YP_007486991.1| - 0.094 12.7 0.0 0.17 11.9 0.0 1.4 1 0 0 1 1 1 0 Transthyretin-like family DAO PF01266.19 gi|452206870|ref|YP_007486992.1| - 1.9e-28 99.4 0.0 2.8e-28 98.8 0.0 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase Mqo PF06039.10 gi|452206870|ref|YP_007486992.1| - 2.5e-22 78.7 0.0 1.7e-21 76.0 0.0 1.8 1 1 0 1 1 1 1 Malate:quinone oxidoreductase (Mqo) NAD_binding_8 PF13450.1 gi|452206870|ref|YP_007486992.1| - 0.0042 17.0 0.0 0.02 14.9 0.0 2.2 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.22 gi|452206870|ref|YP_007486992.1| - 0.0078 16.6 0.0 1 9.7 0.0 2.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|452206870|ref|YP_007486992.1| - 0.022 13.6 0.1 0.03 13.1 0.0 1.1 1 0 0 1 1 1 0 FAD binding domain Pyr_redox_3 PF13738.1 gi|452206870|ref|YP_007486992.1| - 0.039 14.0 0.0 6 6.8 0.0 2.2 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.1 gi|452206870|ref|YP_007486992.1| - 0.06 13.1 0.3 13 5.5 0.1 2.4 2 0 0 2 2 2 0 FAD-NAD(P)-binding HI0933_like PF03486.9 gi|452206870|ref|YP_007486992.1| - 0.18 10.2 0.1 1.2 7.5 0.0 1.9 2 0 0 2 2 2 0 HI0933-like protein Glyoxalase_4 PF13669.1 gi|452206871|ref|YP_007486993.1| - 7.4e-18 64.5 0.3 8.6e-18 64.3 0.2 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_2 PF12681.2 gi|452206871|ref|YP_007486993.1| - 2.9e-09 37.4 0.2 3.3e-09 37.3 0.1 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase PF00903.20 gi|452206871|ref|YP_007486993.1| - 2.1e-07 30.9 0.2 2.5e-07 30.7 0.2 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.1 gi|452206871|ref|YP_007486993.1| - 8.6e-06 25.7 0.9 1.1e-05 25.3 0.6 1.2 1 0 0 1 1 1 1 Glyoxalase-like domain MM_CoA_mutase PF01642.17 gi|452206872|ref|YP_007486994.1| - 6.9e-206 684.3 2.7 7.8e-206 684.1 1.9 1.0 1 0 0 1 1 1 1 Methylmalonyl-CoA mutase PcrB PF01884.12 gi|452206873|ref|YP_007486995.1| - 2.5e-56 190.5 0.8 2.9e-56 190.3 0.5 1.0 1 0 0 1 1 1 1 PcrB family BtpA PF03437.10 gi|452206873|ref|YP_007486995.1| - 0.022 13.9 0.4 0.26 10.4 0.0 2.1 2 0 0 2 2 2 0 BtpA family Trp_syntA PF00290.15 gi|452206873|ref|YP_007486995.1| - 0.076 11.5 0.3 0.22 10.0 0.0 1.8 2 0 0 2 2 2 0 Tryptophan synthase alpha chain Topoisom_bac PF01131.15 gi|452206874|ref|YP_007486996.1| - 6.9e-115 384.0 0.0 8.3e-115 383.8 0.0 1.1 1 0 0 1 1 1 1 DNA topoisomerase zf-C4_Topoisom PF01396.14 gi|452206874|ref|YP_007486996.1| - 5.7e-19 67.3 3.6 3.5e-13 48.7 1.1 4.5 5 0 0 5 5 5 2 Topoisomerase DNA binding C4 zinc finger Toprim PF01751.17 gi|452206874|ref|YP_007486996.1| - 2.7e-15 56.1 0.0 5.3e-15 55.2 0.0 1.5 1 0 0 1 1 1 1 Toprim domain HHH_5 PF14520.1 gi|452206874|ref|YP_007486996.1| - 2.5e-07 30.7 3.5 2.5e-07 30.7 2.4 2.3 2 0 0 2 2 2 1 Helix-hairpin-helix domain Cdd1 PF11731.3 gi|452206874|ref|YP_007486996.1| - 0.00045 20.0 0.0 0.0012 18.7 0.0 1.6 1 0 0 1 1 1 1 Pathogenicity locus DNA_pol_lambd_f PF10391.4 gi|452206874|ref|YP_007486996.1| - 0.0005 19.5 0.1 0.0017 17.8 0.1 1.9 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda HHH PF00633.18 gi|452206874|ref|YP_007486996.1| - 0.023 14.3 0.1 0.064 12.9 0.1 1.8 1 0 0 1 1 1 0 Helix-hairpin-helix motif zinc_ribbon_2 PF13240.1 gi|452206874|ref|YP_007486996.1| - 0.088 12.3 1.7 8 6.0 0.2 3.0 2 1 0 2 2 2 0 zinc-ribbon domain TfoX_C PF04994.8 gi|452206874|ref|YP_007486996.1| - 0.1 12.5 0.0 0.2 11.5 0.0 1.5 1 0 0 1 1 1 0 TfoX C-terminal domain Lar_restr_allev PF14354.1 gi|452206874|ref|YP_007486996.1| - 2.9 8.2 14.6 43 4.5 3.7 4.2 2 1 1 3 3 3 0 Restriction alleviation protein Lar GatB_N PF02934.10 gi|452206875|ref|YP_007486997.1| - 1.8e-109 365.1 0.0 2.4e-109 364.6 0.0 1.1 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.13 gi|452206875|ref|YP_007486997.1| - 1.9e-36 124.9 0.0 2.8e-36 124.4 0.0 1.2 1 0 0 1 1 1 1 GatB domain DUF3680 PF12441.3 gi|452206875|ref|YP_007486997.1| - 0.099 12.5 0.4 0.9 9.4 0.0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3680) Lactamase_B PF00753.22 gi|452206876|ref|YP_007486998.1| - 1.6e-21 76.8 7.2 2.2e-21 76.3 5.0 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|452206876|ref|YP_007486998.1| - 6.7e-05 22.5 0.0 8.5e-05 22.1 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|452206876|ref|YP_007486998.1| - 0.06 13.0 0.0 0.08 12.6 0.0 1.3 1 0 0 1 1 1 0 Beta-lactamase superfamily domain Peptidase_M29 PF02073.10 gi|452206877|ref|YP_007486999.1| - 4.5e-103 345.0 0.0 5.2e-103 344.8 0.0 1.0 1 0 0 1 1 1 1 Thermophilic metalloprotease (M29) UL11 PF11094.3 gi|452206877|ref|YP_007486999.1| - 0.071 12.9 0.0 0.22 11.3 0.0 1.8 1 0 0 1 1 1 0 Membrane-associated tegument protein CBS PF00571.23 gi|452206878|ref|YP_007487000.1| - 5.1e-22 77.3 1.1 1.4e-10 40.8 0.0 2.1 2 0 0 2 2 2 2 CBS domain Cas_Cas02710 PF09670.5 gi|452206879|ref|YP_007487001.1| - 0.021 13.4 0.0 0.028 13.0 0.0 1.2 1 0 0 1 1 1 0 CRISPR-associated protein (Cas_Cas02710) NIR_SIR PF01077.17 gi|452206880|ref|YP_007487002.1| - 2.6e-42 143.8 0.0 3.2e-29 101.3 0.0 2.3 2 0 0 2 2 2 2 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.12 gi|452206880|ref|YP_007487002.1| - 2e-35 120.2 0.2 1e-16 60.3 0.0 3.7 3 1 0 3 3 3 2 Nitrite/Sulfite reductase ferredoxin-like half domain Aldedh PF00171.17 gi|452206884|ref|YP_007487006.1| - 1.4e-136 455.5 0.0 1.6e-136 455.3 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family MCPsignal PF00015.16 gi|452206885|ref|YP_007487007.1| - 1.4e-49 168.5 77.6 3.2e-46 157.5 25.0 5.8 2 2 1 4 4 3 2 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.20 gi|452206885|ref|YP_007487007.1| - 2.2e-13 50.1 0.1 2.2e-13 50.1 0.1 6.9 6 1 1 7 7 4 1 HAMP domain 4HB_MCP_1 PF12729.2 gi|452206885|ref|YP_007487007.1| - 2.3e-07 30.3 1.7 2.3e-07 30.3 1.2 4.6 3 3 0 3 3 3 1 Four helix bundle sensory module for signal transduction Laminin_II PF06009.7 gi|452206885|ref|YP_007487007.1| - 7.6e-06 25.7 35.5 0.015 15.0 2.2 6.0 4 2 1 6 6 6 2 Laminin Domain II DUF948 PF06103.6 gi|452206885|ref|YP_007487007.1| - 0.0014 18.4 30.5 0.0076 16.0 1.1 5.7 6 0 0 6 6 5 2 Bacterial protein of unknown function (DUF948) BLOC1_2 PF10046.4 gi|452206885|ref|YP_007487007.1| - 0.0052 16.8 31.2 0.5 10.5 2.5 6.2 5 2 2 7 7 6 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 RmuC PF02646.11 gi|452206885|ref|YP_007487007.1| - 0.01 14.7 15.2 0.071 11.9 1.1 4.1 3 1 1 4 4 4 0 RmuC family Herpes_U30 PF04523.8 gi|452206885|ref|YP_007487007.1| - 0.023 12.2 4.5 0.76 7.1 0.1 2.3 2 0 0 2 2 2 0 Herpes virus tegument protein U30 DUF2130 PF09903.4 gi|452206885|ref|YP_007487007.1| - 0.03 13.0 6.9 0.052 12.2 1.4 2.6 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2130) DUF1664 PF07889.7 gi|452206885|ref|YP_007487007.1| - 0.068 12.9 29.0 0.32 10.7 2.4 5.4 5 2 1 6 6 4 0 Protein of unknown function (DUF1664) Atg14 PF10186.4 gi|452206885|ref|YP_007487007.1| - 0.082 11.8 12.4 0.58 9.0 2.9 2.7 3 0 0 3 3 3 0 UV radiation resistance protein and autophagy-related subunit 14 Spc7 PF08317.6 gi|452206885|ref|YP_007487007.1| - 0.13 10.9 24.2 0.12 11.0 6.0 3.3 1 1 2 4 4 4 0 Spc7 kinetochore protein Laminin_I PF06008.9 gi|452206885|ref|YP_007487007.1| - 0.23 10.7 39.6 0.032 13.5 9.8 4.1 2 1 1 4 4 4 0 Laminin Domain I AAA_13 PF13166.1 gi|452206885|ref|YP_007487007.1| - 0.48 8.8 29.5 0.33 9.3 3.3 2.7 2 1 1 3 3 3 0 AAA domain NPV_P10 PF05531.7 gi|452206885|ref|YP_007487007.1| - 0.51 10.6 35.2 0.11 12.6 0.9 6.8 5 2 2 7 7 6 0 Nucleopolyhedrovirus P10 protein CHDCT2 PF08074.6 gi|452206885|ref|YP_007487007.1| - 0.95 9.1 0.0 0.95 9.1 0.0 3.5 3 2 2 5 5 4 0 CHDCT2 (NUC038) domain FtsQ PF03799.10 gi|452206885|ref|YP_007487007.1| - 1.1 9.4 6.5 2.6 8.2 0.1 3.9 3 2 1 4 4 4 0 Cell division protein FtsQ DUF869 PF05911.6 gi|452206885|ref|YP_007487007.1| - 1.2 7.3 34.4 2.1 6.4 11.2 3.1 2 1 1 3 3 3 0 Plant protein of unknown function (DUF869) Fib_alpha PF08702.5 gi|452206885|ref|YP_007487007.1| - 1.4 9.0 19.5 4.2 7.5 3.2 4.9 5 1 1 6 6 6 0 Fibrinogen alpha/beta chain family CorA PF01544.13 gi|452206885|ref|YP_007487007.1| - 1.5 7.8 15.5 6.7 5.6 1.5 3.8 1 1 4 5 5 5 0 CorA-like Mg2+ transporter protein Tweety PF04906.8 gi|452206885|ref|YP_007487007.1| - 2.4 6.4 11.0 1.8 6.8 0.1 3.2 2 1 1 3 3 3 0 Tweety Nup54 PF13874.1 gi|452206885|ref|YP_007487007.1| - 3.7 7.2 14.7 12 5.5 2.0 4.4 2 2 1 3 3 3 0 Nucleoporin complex subunit 54 Prominin PF05478.6 gi|452206885|ref|YP_007487007.1| - 5.3 4.4 21.1 3.1 5.2 7.3 2.2 1 1 1 2 2 2 0 Prominin Transposase_22 PF02994.9 gi|452206885|ref|YP_007487007.1| - 7.2 5.0 19.8 6.4 5.1 4.2 2.5 2 0 0 2 2 2 0 L1 transposable element Hormone_1 PF00103.15 gi|452206885|ref|YP_007487007.1| - 8.1 5.7 11.2 11 5.3 0.2 3.9 4 1 0 4 4 4 0 Somatotropin hormone family Methyltransf_11 PF08241.7 gi|452206886|ref|YP_007487008.1| - 1.7e-13 50.8 0.0 2.9e-13 50.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|452206886|ref|YP_007487008.1| - 2.9e-13 49.8 0.1 3.5e-13 49.6 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|452206886|ref|YP_007487008.1| - 5.9e-11 42.6 0.0 1.2e-10 41.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|452206886|ref|YP_007487008.1| - 2.8e-09 37.5 0.1 3.9e-09 37.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.7 gi|452206886|ref|YP_007487008.1| - 4.8e-09 35.8 0.0 5.8e-09 35.5 0.0 1.1 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_26 PF13659.1 gi|452206886|ref|YP_007487008.1| - 3.4e-08 33.5 0.3 7.4e-08 32.4 0.1 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|452206886|ref|YP_007487008.1| - 1.3e-06 28.1 0.0 1.5e-06 27.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|452206886|ref|YP_007487008.1| - 1.1e-05 25.7 0.0 2.1e-05 24.9 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|452206886|ref|YP_007487008.1| - 0.0073 15.7 0.0 0.011 15.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_24 PF13578.1 gi|452206886|ref|YP_007487008.1| - 0.019 15.7 0.4 0.12 13.1 0.1 2.1 1 1 1 2 2 2 0 Methyltransferase domain TehB PF03848.9 gi|452206886|ref|YP_007487008.1| - 0.025 13.7 0.0 0.041 13.0 0.0 1.3 1 0 0 1 1 1 0 Tellurite resistance protein TehB Methyltransf_17 PF12692.2 gi|452206886|ref|YP_007487008.1| - 0.032 13.9 0.1 0.097 12.3 0.0 1.8 2 0 0 2 2 2 0 S-adenosyl-L-methionine methyltransferase SnoaL_2 PF12680.2 gi|452206886|ref|YP_007487008.1| - 0.037 14.4 0.8 6.2 7.2 0.0 2.6 2 1 1 3 3 3 0 SnoaL-like domain DUF938 PF06080.7 gi|452206886|ref|YP_007487008.1| - 0.049 13.1 0.0 0.092 12.2 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF938) Spermine_synth PF01564.12 gi|452206887|ref|YP_007487009.1| - 2.5e-11 42.9 0.0 3.5e-11 42.5 0.0 1.2 1 0 0 1 1 1 1 Spermine/spermidine synthase Methyltransf_18 PF12847.2 gi|452206887|ref|YP_007487009.1| - 0.0017 18.8 0.0 0.0031 18.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_30 PF05430.6 gi|452206887|ref|YP_007487009.1| - 0.071 12.7 0.0 0.13 11.9 0.0 1.3 1 0 0 1 1 1 0 S-adenosyl-L-methionine-dependent methyltransferase DUF21 PF01595.15 gi|452206888|ref|YP_007487010.1| - 5.9e-49 165.8 3.0 7.7e-49 165.4 2.1 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF21 CorC_HlyC PF03471.12 gi|452206888|ref|YP_007487010.1| - 1.1e-20 73.1 0.1 3.4e-20 71.6 0.1 1.9 1 0 0 1 1 1 1 Transporter associated domain CBS PF00571.23 gi|452206888|ref|YP_007487010.1| - 9.1e-19 66.9 2.0 1.6e-10 40.6 0.4 2.4 2 0 0 2 2 2 2 CBS domain SCO1-SenC PF02630.9 gi|452206889|ref|YP_007487011.1| - 1.2e-09 38.0 0.0 1.7e-09 37.5 0.0 1.1 1 0 0 1 1 1 1 SCO1/SenC Redoxin PF08534.5 gi|452206889|ref|YP_007487011.1| - 0.027 14.0 0.0 0.032 13.7 0.0 1.4 1 1 0 1 1 1 0 Redoxin Redoxin PF08534.5 gi|452206890|ref|YP_007487012.1| - 6e-11 42.0 0.0 7.8e-11 41.7 0.0 1.1 1 0 0 1 1 1 1 Redoxin AhpC-TSA PF00578.16 gi|452206890|ref|YP_007487012.1| - 1.3e-09 37.7 0.0 1.7e-09 37.4 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Thioredoxin PF00085.15 gi|452206890|ref|YP_007487012.1| - 8.2e-07 28.6 0.0 2.3e-05 24.0 0.0 2.2 2 0 0 2 2 2 1 Thioredoxin Thioredoxin_8 PF13905.1 gi|452206890|ref|YP_007487012.1| - 2.3e-06 27.6 0.0 3.1e-06 27.2 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin-like Thioredoxin_2 PF13098.1 gi|452206890|ref|YP_007487012.1| - 0.0013 18.9 0.0 0.0018 18.4 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin-like domain DUF953 PF06110.6 gi|452206890|ref|YP_007487012.1| - 0.025 14.0 0.2 0.038 13.4 0.1 1.2 1 0 0 1 1 1 0 Eukaryotic protein of unknown function (DUF953) DsbD PF02683.10 gi|452206891|ref|YP_007487013.1| - 2e-08 34.1 14.6 2.7e-08 33.6 10.1 1.2 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region AA_permease PF00324.16 gi|452206892|ref|YP_007487014.1| - 7.5e-42 143.2 41.0 9.3e-42 142.9 28.4 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease_2 PF13520.1 gi|452206892|ref|YP_007487014.1| - 2.4e-41 141.6 40.4 3e-41 141.3 28.0 1.0 1 0 0 1 1 1 1 Amino acid permease Spore_permease PF03845.8 gi|452206892|ref|YP_007487014.1| - 0.0032 16.1 10.4 0.0098 14.5 6.9 1.8 1 1 0 1 1 1 1 Spore germination protein Usp PF00582.21 gi|452206893|ref|YP_007487015.1| - 1.1e-07 32.1 0.8 7.7e-07 29.3 0.4 2.0 2 0 0 2 2 2 1 Universal stress protein family Peptidase_M24 PF00557.19 gi|452206894|ref|YP_007487016.1| - 1.2e-41 142.5 2.0 1.5e-41 142.2 1.4 1.2 1 0 0 1 1 1 1 Metallopeptidase family M24 DUF63 PF01889.12 gi|452206895|ref|YP_007487017.1| - 6.9e-15 55.8 0.0 1.1e-14 55.1 0.0 1.4 1 1 0 1 1 1 1 Membrane protein of unknown function DUF63 DUF805 PF05656.9 gi|452206895|ref|YP_007487017.1| - 1.7 8.4 5.4 0.42 10.4 1.4 1.8 2 1 0 2 2 2 0 Protein of unknown function (DUF805) PNP_UDP_1 PF01048.15 gi|452206896|ref|YP_007487018.1| - 7.7e-46 155.9 5.6 9e-46 155.7 3.8 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily TrkA_N PF02254.13 gi|452206897|ref|YP_007487019.1| - 8.8e-28 96.6 0.1 1.4e-27 95.9 0.1 1.3 1 0 0 1 1 1 1 TrkA-N domain Ion_trans_2 PF07885.11 gi|452206897|ref|YP_007487019.1| - 1.8e-15 56.3 2.5 1.8e-15 56.3 1.8 2.4 3 0 0 3 3 3 1 Ion channel Ion_trans PF00520.26 gi|452206897|ref|YP_007487019.1| - 0.013 14.7 0.3 0.019 14.2 0.2 1.3 1 0 0 1 1 1 0 Ion transport protein ADH_zinc_N PF00107.21 gi|452206897|ref|YP_007487019.1| - 0.091 12.3 0.3 0.54 9.8 0.0 2.4 3 0 0 3 3 3 0 Zinc-binding dehydrogenase TrkA_C PF02080.16 gi|452206898|ref|YP_007487020.1| - 1.6e-13 50.0 0.5 7.4e-13 47.8 0.0 2.5 3 0 0 3 3 3 1 TrkA-C domain DUF3084 PF11283.3 gi|452206898|ref|YP_007487020.1| - 0.031 14.1 1.6 0.38 10.6 0.1 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3084) TrkA_C PF02080.16 gi|452206899|ref|YP_007487021.1| - 0.0035 16.9 2.2 0.042 13.4 0.4 2.7 2 0 0 2 2 2 1 TrkA-C domain Fer4_15 PF13459.1 gi|452206900|ref|YP_007487022.1| - 0.0066 16.9 2.6 0.0085 16.6 1.2 1.7 1 1 0 1 1 1 1 4Fe-4S single cluster domain 2-Hacid_dh_C PF02826.14 gi|452206902|ref|YP_007487024.1| - 4.2e-53 179.1 0.0 5.7e-53 178.6 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|452206902|ref|YP_007487024.1| - 7.6e-10 38.3 0.0 9.6e-10 38.0 0.0 1.1 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.10 gi|452206902|ref|YP_007487024.1| - 2.2e-06 27.5 0.1 3.5e-06 26.9 0.1 1.3 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.12 gi|452206902|ref|YP_007487024.1| - 0.0034 17.7 0.2 0.0075 16.6 0.1 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 3HCDH_N PF02737.13 gi|452206902|ref|YP_007487024.1| - 0.027 14.1 0.2 0.045 13.4 0.1 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TrkA_N PF02254.13 gi|452206902|ref|YP_007487024.1| - 0.21 11.5 1.1 0.55 10.2 0.0 2.3 3 0 0 3 3 3 0 TrkA-N domain NAD_Gly3P_dh_N PF01210.18 gi|452206902|ref|YP_007487024.1| - 0.47 10.1 2.2 1.7 8.3 0.0 2.5 2 1 1 3 3 3 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Pribosyltran PF00156.22 gi|452206903|ref|YP_007487025.1| - 3.6e-17 62.2 2.5 5.5e-17 61.6 0.3 1.9 1 1 1 2 2 2 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|452206903|ref|YP_007487025.1| - 0.00012 21.3 0.1 0.00017 20.8 0.1 1.3 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.1 gi|452206903|ref|YP_007487025.1| - 0.12 11.6 0.2 0.17 11.1 0.1 1.2 1 0 0 1 1 1 0 Phosphoribosyl transferase DHHA1 PF02272.14 gi|452206904|ref|YP_007487026.1| - 0.0018 17.9 0.0 0.0052 16.4 0.0 1.8 1 0 0 1 1 1 1 DHHA1 domain Usp PF00582.21 gi|452206905|ref|YP_007487027.1| - 4.5e-31 107.9 0.9 5e-31 107.7 0.7 1.0 1 0 0 1 1 1 1 Universal stress protein family Usp PF00582.21 gi|452206906|ref|YP_007487028.1| - 2.8e-12 46.9 3.1 1.5e-11 44.6 2.1 1.9 1 1 0 1 1 1 1 Universal stress protein family DUF4152 PF13680.1 gi|452206906|ref|YP_007487028.1| - 0.061 12.3 0.1 0.08 11.9 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4152) Acetyltransf_1 PF00583.19 gi|452206907|ref|YP_007487029.1| - 9.5e-15 54.3 0.1 1.5e-14 53.7 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_3 PF13302.1 gi|452206907|ref|YP_007487029.1| - 2.4e-09 37.5 0.0 3e-09 37.1 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|452206907|ref|YP_007487029.1| - 9.4e-07 28.9 0.0 1.2e-06 28.6 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|452206907|ref|YP_007487029.1| - 0.0002 21.4 0.0 0.00044 20.3 0.0 1.5 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|452206907|ref|YP_007487029.1| - 0.0003 20.5 0.0 0.00044 19.9 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_4 PF13420.1 gi|452206907|ref|YP_007487029.1| - 0.0079 16.1 0.0 0.01 15.7 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|452206907|ref|YP_007487029.1| - 0.0093 15.8 0.0 0.012 15.4 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|452206907|ref|YP_007487029.1| - 0.014 15.2 0.0 0.072 12.9 0.0 2.0 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.1 gi|452206907|ref|YP_007487029.1| - 0.025 14.5 0.1 0.035 14.0 0.0 1.1 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain DUF4178 PF13785.1 gi|452206907|ref|YP_007487029.1| - 0.053 13.4 0.2 13 5.7 0.0 2.5 3 0 0 3 3 3 0 Domain of unknown function (DUF4178) Usp PF00582.21 gi|452206908|ref|YP_007487030.1| - 8.4e-15 55.1 0.3 1.4e-14 54.4 0.2 1.3 1 1 0 1 1 1 1 Universal stress protein family FlgH PF02107.11 gi|452206908|ref|YP_007487030.1| - 0.026 14.0 0.0 0.026 14.0 0.0 1.1 1 0 0 1 1 1 0 Flagellar L-ring protein zf-ribbon_3 PF13248.1 gi|452206909|ref|YP_007487031.1| - 0.0033 16.5 0.2 0.0062 15.7 0.1 1.5 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|452206909|ref|YP_007487031.1| - 0.047 13.2 0.8 0.1 12.1 0.5 1.6 1 0 0 1 1 1 0 zinc-ribbon domain UPF0547 PF10571.4 gi|452206909|ref|YP_007487031.1| - 0.07 12.8 0.7 0.13 11.9 0.5 1.4 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 Amidohydro_4 PF13147.1 gi|452206910|ref|YP_007487032.1| - 7.4e-29 101.6 15.5 1e-28 101.1 10.7 1.2 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_1 PF01979.15 gi|452206910|ref|YP_007487032.1| - 1.3e-20 74.3 0.7 1.8e-20 73.8 0.5 1.2 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|452206910|ref|YP_007487032.1| - 1.1e-13 50.7 0.8 4.8e-13 48.7 0.5 2.2 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|452206910|ref|YP_007487032.1| - 0.00012 21.3 16.4 0.0018 17.5 7.2 2.7 1 1 1 2 2 2 2 Amidohydrolase family DHOase PF12890.2 gi|452206910|ref|YP_007487032.1| - 0.00032 20.3 0.0 0.00089 18.9 0.0 1.8 1 1 0 1 1 1 1 Dihydro-orotase-like AP_endonuc_2 PF01261.19 gi|452206910|ref|YP_007487032.1| - 0.039 13.2 2.0 0.086 12.1 1.4 1.5 1 1 0 1 1 1 0 Xylose isomerase-like TIM barrel Usp PF00582.21 gi|452206910|ref|YP_007487032.1| - 0.042 14.0 0.5 0.097 12.8 0.1 1.8 2 0 0 2 2 2 0 Universal stress protein family DUF367 PF04034.8 gi|452206912|ref|YP_007487034.1| - 5.3e-45 152.1 0.0 6.3e-45 151.8 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF367) RLI PF04068.10 gi|452206912|ref|YP_007487034.1| - 2.2e-09 36.7 0.0 3.3e-09 36.1 0.0 1.3 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI SnoaL_2 PF12680.2 gi|452206913|ref|YP_007487035.1| - 4.7e-10 39.7 1.8 5.3e-10 39.6 1.3 1.0 1 0 0 1 1 1 1 SnoaL-like domain DUF4440 PF14534.1 gi|452206913|ref|YP_007487035.1| - 0.00052 20.1 0.1 0.00067 19.8 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4440) SnoaL_4 PF13577.1 gi|452206913|ref|YP_007487035.1| - 0.001 18.9 0.1 0.0015 18.4 0.1 1.3 1 1 0 1 1 1 1 SnoaL-like domain NTF2 PF02136.15 gi|452206913|ref|YP_007487035.1| - 0.004 17.5 0.0 0.005 17.2 0.0 1.1 1 0 0 1 1 1 1 Nuclear transport factor 2 (NTF2) domain SnoaL_3 PF13474.1 gi|452206913|ref|YP_007487035.1| - 0.025 14.6 0.0 0.031 14.3 0.0 1.2 1 0 0 1 1 1 0 SnoaL-like domain tRNA-synt_2b PF00587.20 gi|452206914|ref|YP_007487036.1| - 7.8e-37 126.5 0.0 1.2e-36 125.8 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) Seryl_tRNA_N PF02403.17 gi|452206914|ref|YP_007487036.1| - 1.4e-27 95.7 2.8 2.1e-27 95.2 1.9 1.2 1 0 0 1 1 1 1 Seryl-tRNA synthetase N-terminal domain PilJ PF13675.1 gi|452206914|ref|YP_007487036.1| - 0.025 14.8 0.4 0.064 13.5 0.3 1.7 1 0 0 1 1 1 0 Type IV pili methyl-accepting chemotaxis transducer N-term Mnd1 PF03962.10 gi|452206914|ref|YP_007487036.1| - 0.14 11.8 3.3 0.24 11.0 2.3 1.3 1 0 0 1 1 1 0 Mnd1 family OmpH PF03938.9 gi|452206914|ref|YP_007487036.1| - 0.14 12.0 0.8 0.23 11.3 0.6 1.2 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) TMF_TATA_bd PF12325.3 gi|452206914|ref|YP_007487036.1| - 0.15 11.7 5.2 0.28 10.9 3.6 1.4 1 0 0 1 1 1 0 TATA element modulatory factor 1 TATA binding DUF4200 PF13863.1 gi|452206914|ref|YP_007487036.1| - 1 9.2 6.2 2 8.3 4.3 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4200) DivIC PF04977.10 gi|452206914|ref|YP_007487036.1| - 1.9 8.0 6.8 2 7.9 0.3 2.3 1 1 1 2 2 2 0 Septum formation initiator APG6 PF04111.7 gi|452206914|ref|YP_007487036.1| - 2.6 6.9 4.3 4.6 6.1 3.0 1.3 1 0 0 1 1 1 0 Autophagy protein Apg6 Lactamase_B PF00753.22 gi|452206915|ref|YP_007487037.1| - 1.5e-21 76.9 11.3 2.3e-21 76.3 7.9 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|452206915|ref|YP_007487037.1| - 0.0069 15.9 0.2 0.0092 15.5 0.1 1.4 1 1 0 1 1 1 1 Beta-lactamase superfamily domain ArsA_ATPase PF02374.10 gi|452206916|ref|YP_007487038.1| - 2e-71 240.5 0.0 2.5e-71 240.2 0.0 1.0 1 0 0 1 1 1 1 Anion-transporting ATPase CbiA PF01656.18 gi|452206916|ref|YP_007487038.1| - 3.6e-13 49.3 0.0 1.8e-12 47.1 0.0 1.9 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|452206916|ref|YP_007487038.1| - 3e-07 30.4 0.0 2.7e-06 27.3 0.0 2.1 1 1 0 1 1 1 1 AAA domain Fer4_NifH PF00142.13 gi|452206916|ref|YP_007487038.1| - 0.00068 18.9 0.0 0.0016 17.6 0.0 1.6 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family KaiC PF06745.8 gi|452206916|ref|YP_007487038.1| - 0.003 16.7 0.0 0.0044 16.1 0.0 1.3 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|452206916|ref|YP_007487038.1| - 0.0039 16.6 1.9 0.018 14.4 0.6 2.4 2 1 0 2 2 2 1 AAA domain IstB_IS21 PF01695.12 gi|452206916|ref|YP_007487038.1| - 0.0044 16.4 0.1 0.0093 15.4 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_10 PF12846.2 gi|452206916|ref|YP_007487038.1| - 0.016 14.6 0.0 0.023 14.1 0.0 1.3 1 1 0 1 1 1 0 AAA-like domain AAA_26 PF13500.1 gi|452206916|ref|YP_007487038.1| - 0.018 14.6 0.0 0.16 11.5 0.0 2.2 2 0 0 2 2 2 0 AAA domain PhoH PF02562.11 gi|452206916|ref|YP_007487038.1| - 0.02 14.1 0.0 0.039 13.1 0.0 1.5 1 0 0 1 1 1 0 PhoH-like protein MipZ PF09140.6 gi|452206916|ref|YP_007487038.1| - 0.029 13.4 0.4 0.082 11.9 0.1 1.9 2 1 0 2 2 2 0 ATPase MipZ ArgK PF03308.11 gi|452206916|ref|YP_007487038.1| - 0.086 11.5 0.0 0.26 10.0 0.0 1.7 2 0 0 2 2 2 0 ArgK protein Tir_receptor_N PF07490.6 gi|452206916|ref|YP_007487038.1| - 0.097 12.2 0.0 0.14 11.7 0.0 1.3 1 0 0 1 1 1 0 Translocated intimin receptor (Tir) N-terminus ParA PF10609.4 gi|452206916|ref|YP_007487038.1| - 0.1 12.4 0.0 0.76 9.6 0.0 2.2 2 0 0 2 2 2 0 ParA/MinD ATPase like SRP54 PF00448.17 gi|452206916|ref|YP_007487038.1| - 0.12 11.8 0.0 0.32 10.4 0.0 1.7 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain OB_RNB PF08206.6 gi|452206916|ref|YP_007487038.1| - 0.12 11.8 0.0 0.26 10.8 0.0 1.5 1 0 0 1 1 1 0 Ribonuclease B OB domain AAA_24 PF13479.1 gi|452206916|ref|YP_007487038.1| - 0.15 11.6 0.0 0.27 10.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|452206916|ref|YP_007487038.1| - 0.26 11.0 0.2 0.26 11.0 0.1 2.8 3 0 0 3 3 3 0 Part of AAA domain AAA_33 PF13671.1 gi|452206916|ref|YP_007487038.1| - 0.28 11.0 1.7 0.52 10.1 0.0 2.2 3 1 0 3 3 3 0 AAA domain Cytochrom_B559a PF00284.15 gi|452206917|ref|YP_007487039.1| - 0.034 13.6 0.1 0.066 12.7 0.0 1.4 1 0 0 1 1 1 0 Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit cobW PF02492.14 gi|452206918|ref|YP_007487040.1| - 3.1e-45 153.7 0.0 3.9e-45 153.4 0.0 1.1 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain CobW_C PF07683.9 gi|452206918|ref|YP_007487040.1| - 1.4e-24 85.6 0.0 2.8e-24 84.6 0.0 1.6 1 0 0 1 1 1 1 Cobalamin synthesis protein cobW C-terminal domain T2SE PF00437.15 gi|452206918|ref|YP_007487040.1| - 0.0026 16.6 0.0 0.0041 16.0 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein DUF258 PF03193.11 gi|452206918|ref|YP_007487040.1| - 0.0054 15.9 0.0 0.009 15.2 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF258 UPF0079 PF02367.12 gi|452206918|ref|YP_007487040.1| - 0.0065 16.0 0.0 0.023 14.3 0.0 1.8 2 0 0 2 2 2 1 Uncharacterised P-loop hydrolase UPF0079 GTP_EFTU PF00009.22 gi|452206918|ref|YP_007487040.1| - 0.0074 15.7 0.0 1.3 8.4 0.0 2.2 2 0 0 2 2 2 1 Elongation factor Tu GTP binding domain AAA_16 PF13191.1 gi|452206918|ref|YP_007487040.1| - 0.0086 16.0 0.5 0.024 14.6 0.1 2.1 2 1 0 2 2 2 1 AAA ATPase domain Zeta_toxin PF06414.7 gi|452206918|ref|YP_007487040.1| - 0.011 14.7 0.0 0.02 13.9 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin AAA_22 PF13401.1 gi|452206918|ref|YP_007487040.1| - 0.024 14.7 0.0 0.048 13.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|452206918|ref|YP_007487040.1| - 0.05 13.9 0.0 0.1 12.9 0.0 1.5 1 0 0 1 1 1 0 ABC transporter AAA_19 PF13245.1 gi|452206918|ref|YP_007487040.1| - 0.053 13.2 0.1 0.14 11.9 0.0 1.6 1 0 0 1 1 1 0 Part of AAA domain TrwB_AAD_bind PF10412.4 gi|452206918|ref|YP_007487040.1| - 0.069 11.7 0.0 0.1 11.2 0.0 1.1 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_28 PF13521.1 gi|452206918|ref|YP_007487040.1| - 0.075 12.9 0.0 0.16 11.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|452206918|ref|YP_007487040.1| - 0.075 12.9 0.0 0.18 11.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain Arch_ATPase PF01637.13 gi|452206918|ref|YP_007487040.1| - 0.11 12.1 0.0 0.17 11.5 0.0 1.2 1 0 0 1 1 1 0 Archaeal ATPase MMR_HSR1 PF01926.18 gi|452206918|ref|YP_007487040.1| - 0.13 12.2 0.0 0.32 10.9 0.0 1.7 1 1 0 1 1 1 0 50S ribosome-binding GTPase MobB PF03205.9 gi|452206918|ref|YP_007487040.1| - 0.13 11.9 0.0 0.22 11.2 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B NACHT PF05729.7 gi|452206918|ref|YP_007487040.1| - 0.18 11.4 0.0 0.37 10.4 0.0 1.5 1 0 0 1 1 1 0 NACHT domain Zn-ribbon_8 PF09723.5 gi|452206919|ref|YP_007487041.1| - 0.0018 18.2 0.5 0.0029 17.5 0.4 1.4 1 0 0 1 1 1 1 Zinc ribbon domain DZR PF12773.2 gi|452206919|ref|YP_007487041.1| - 0.0032 17.2 0.6 0.0041 16.8 0.4 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-RING_3 PF14369.1 gi|452206919|ref|YP_007487041.1| - 0.0037 17.2 5.3 0.01 15.8 3.7 1.7 1 1 0 1 1 1 1 zinc-finger zf-CHY PF05495.7 gi|452206919|ref|YP_007487041.1| - 0.016 15.3 0.4 0.019 15.1 0.3 1.1 1 0 0 1 1 1 0 CHY zinc finger PHD PF00628.24 gi|452206919|ref|YP_007487041.1| - 0.049 13.3 0.5 1.9 8.2 0.0 2.2 2 0 0 2 2 2 0 PHD-finger zf-ribbon_3 PF13248.1 gi|452206919|ref|YP_007487041.1| - 0.055 12.7 0.1 0.1 11.8 0.1 1.5 1 0 0 1 1 1 0 zinc-ribbon domain Zn_ribbon_recom PF13408.1 gi|452206919|ref|YP_007487041.1| - 0.077 13.2 0.6 0.48 10.7 0.1 2.0 2 0 0 2 2 2 0 Recombinase zinc beta ribbon domain DNA_RNApol_7kD PF03604.8 gi|452206919|ref|YP_007487041.1| - 0.081 12.4 1.4 0.44 10.0 1.0 2.0 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit zf-dskA_traR PF01258.12 gi|452206919|ref|YP_007487041.1| - 0.1 12.3 2.0 1.9 8.3 0.1 2.3 2 0 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger zinc-ribbons_6 PF07191.7 gi|452206919|ref|YP_007487041.1| - 0.12 12.1 1.9 0.86 9.4 1.3 2.0 1 1 0 1 1 1 0 zinc-ribbons Lar_restr_allev PF14354.1 gi|452206919|ref|YP_007487041.1| - 0.18 12.1 2.3 0.71 10.2 1.6 1.9 1 1 0 1 1 1 0 Restriction alleviation protein Lar HypA PF01155.14 gi|452206919|ref|YP_007487041.1| - 0.23 11.1 1.8 0.35 10.5 1.2 1.4 1 1 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Zn_Tnp_IS1595 PF12760.2 gi|452206919|ref|YP_007487041.1| - 0.29 10.9 2.7 1.1 9.1 0.7 2.1 2 0 0 2 2 2 0 Transposase zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|452206919|ref|YP_007487041.1| - 2.5 7.4 5.8 10 5.5 4.2 1.9 1 1 1 2 2 2 0 TFIIB zinc-binding VIT1 PF01988.14 gi|452206920|ref|YP_007487042.1| - 0.24 10.8 2.8 0.28 10.6 1.9 1.1 1 0 0 1 1 1 0 VIT family DUF3317 PF11779.3 gi|452206921|ref|YP_007487043.1| - 0.015 14.7 1.7 0.02 14.3 1.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3317) zf-C2H2_3 PF13878.1 gi|452206922|ref|YP_007487044.1| - 0.076 12.5 0.1 0.11 12.1 0.0 1.2 1 0 0 1 1 1 0 zinc-finger of acetyl-transferase ESCO CstA PF02554.9 gi|452206924|ref|YP_007487046.1| - 7.2e-125 416.5 22.4 7.2e-125 416.5 15.6 1.9 2 0 0 2 2 2 1 Carbon starvation protein CstA DUF4161 PF13722.1 gi|452206924|ref|YP_007487046.1| - 5.1e-30 104.3 3.4 5.1e-30 104.3 2.4 3.7 4 1 0 4 4 4 1 C-terminal domain on CstA (DUF4161) Pox_P21 PF05313.7 gi|452206924|ref|YP_007487046.1| - 0.2 10.9 4.8 0.22 10.7 0.7 2.5 2 0 0 2 2 2 0 Poxvirus P21 membrane protein Cas_Cas4 PF01930.12 gi|452206925|ref|YP_007487047.1| - 7.6e-06 25.9 0.1 5.7e-05 23.0 0.0 1.9 2 0 0 2 2 2 1 Domain of unknown function DUF83 PDDEXK_1 PF12705.2 gi|452206925|ref|YP_007487047.1| - 0.046 13.1 2.8 0.68 9.2 0.4 2.2 1 1 0 2 2 2 0 PD-(D/E)XK nuclease superfamily Sua5_yciO_yrdC PF01300.13 gi|452206926|ref|YP_007487048.1| - 1.4e-50 171.0 0.0 1.5e-50 170.8 0.0 1.0 1 0 0 1 1 1 1 Telomere recombination DUF4129 PF13559.1 gi|452206926|ref|YP_007487048.1| - 1.4 8.9 7.3 0.26 11.2 0.6 2.8 2 2 0 2 2 2 0 Domain of unknown function (DUF4129) AhpC-TSA PF00578.16 gi|452206927|ref|YP_007487049.1| - 9.8e-17 60.8 0.0 1.3e-16 60.4 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|452206927|ref|YP_007487049.1| - 8e-05 22.2 0.0 0.00071 19.1 0.0 1.9 1 1 0 1 1 1 1 Redoxin GST_N_3 PF13417.1 gi|452206928|ref|YP_007487050.1| - 1.2e-15 57.4 0.0 1.5e-15 57.1 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain Glutaredoxin PF00462.19 gi|452206928|ref|YP_007487050.1| - 1e-14 54.2 0.0 1.4e-14 53.7 0.0 1.2 1 0 0 1 1 1 1 Glutaredoxin GST_N_2 PF13409.1 gi|452206928|ref|YP_007487050.1| - 2.9e-13 49.5 0.0 3.5e-13 49.3 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N PF02798.15 gi|452206928|ref|YP_007487050.1| - 0.00017 21.6 0.0 0.00023 21.2 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain DUF836 PF05768.9 gi|452206928|ref|YP_007487050.1| - 0.056 13.7 0.0 0.074 13.3 0.0 1.2 1 0 0 1 1 1 0 Glutaredoxin-like domain (DUF836) DUF21 PF01595.15 gi|452206929|ref|YP_007487051.1| - 2e-51 173.8 0.1 3e-51 173.2 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF21 CorC_HlyC PF03471.12 gi|452206929|ref|YP_007487051.1| - 5.8e-21 74.0 2.2 1.5e-20 72.7 1.5 1.7 1 0 0 1 1 1 1 Transporter associated domain CBS PF00571.23 gi|452206929|ref|YP_007487051.1| - 3e-20 71.7 4.3 4e-11 42.5 0.2 2.7 2 0 0 2 2 2 2 CBS domain GSK-3_bind PF05350.7 gi|452206929|ref|YP_007487051.1| - 0.071 12.5 0.2 1.5 8.2 0.0 2.4 2 0 0 2 2 2 0 Glycogen synthase kinase-3 binding PHO4 PF01384.15 gi|452206930|ref|YP_007487052.1| - 1.1e-37 129.3 37.0 1.1e-37 129.3 25.6 1.7 1 1 0 1 1 1 1 Phosphate transporter family UPF0029 PF01205.14 gi|452206931|ref|YP_007487053.1| - 1.2e-35 121.5 0.0 1.6e-35 121.0 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized protein family UPF0029 DUF1949 PF09186.6 gi|452206931|ref|YP_007487053.1| - 4.3e-08 32.6 0.9 5.6e-07 29.0 0.1 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF1949) UPRTase PF14681.1 gi|452206932|ref|YP_007487054.1| - 1.3e-56 191.1 0.0 1.5e-56 190.9 0.0 1.0 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Pribosyltran PF00156.22 gi|452206932|ref|YP_007487054.1| - 2.4e-06 27.2 0.9 3.9e-06 26.6 0.6 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain DASH_Dad2 PF08654.5 gi|452206933|ref|YP_007487055.1| - 0.057 13.4 0.4 10 6.2 0.0 2.3 1 1 1 2 2 2 0 DASH complex subunit Dad2 CheZ PF04344.8 gi|452206933|ref|YP_007487055.1| - 0.12 11.9 0.5 1.1 8.9 0.1 2.0 1 1 1 2 2 2 0 Chemotaxis phosphatase, CheZ Tape_meas_lam_C PF09718.5 gi|452206933|ref|YP_007487055.1| - 0.15 11.9 0.3 2.1 8.3 0.1 2.3 2 0 0 2 2 2 0 Lambda phage tail tape-measure protein (Tape_meas_lam_C) DUF2959 PF11172.3 gi|452206933|ref|YP_007487055.1| - 0.16 11.7 2.1 0.35 10.5 0.3 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2959) ACT PF01842.20 gi|452206934|ref|YP_007487056.1| - 5.6e-06 25.7 0.5 2.9e-05 23.4 0.3 2.3 1 1 0 1 1 1 1 ACT domain ACT_7 PF13840.1 gi|452206934|ref|YP_007487056.1| - 2.3e-05 23.8 0.1 6.8e-05 22.3 0.0 1.8 2 0 0 2 2 2 1 ACT domain ACT_6 PF13740.1 gi|452206934|ref|YP_007487056.1| - 0.016 14.9 0.1 0.04 13.6 0.0 1.7 1 1 0 1 1 1 0 ACT domain ACT_4 PF13291.1 gi|452206934|ref|YP_007487056.1| - 0.052 13.8 0.1 0.24 11.7 0.0 2.1 2 1 0 2 2 2 0 ACT domain 4HBT PF03061.17 gi|452206935|ref|YP_007487057.1| - 1.4e-16 60.4 0.3 1.9e-16 59.9 0.2 1.2 1 0 0 1 1 1 1 Thioesterase superfamily DUF4442 PF14539.1 gi|452206935|ref|YP_007487057.1| - 3.5e-06 27.0 0.1 6.9e-06 26.0 0.1 1.5 1 1 0 1 1 1 1 Domain of unknown function (DUF4442) 4HBT_3 PF13622.1 gi|452206935|ref|YP_007487057.1| - 1.3e-05 25.1 0.3 1.4e-05 24.9 0.2 1.1 1 0 0 1 1 1 1 Thioesterase-like superfamily PS-DH PF14765.1 gi|452206935|ref|YP_007487057.1| - 0.0026 16.9 0.3 0.0034 16.5 0.2 1.0 1 0 0 1 1 1 1 Polyketide synthase dehydratase MobB PF03205.9 gi|452206936|ref|YP_007487058.1| - 2.1e-18 66.3 0.0 4.7e-18 65.2 0.0 1.5 1 1 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_16 PF13191.1 gi|452206936|ref|YP_007487058.1| - 9.7e-06 25.6 0.2 4.2e-05 23.6 0.1 1.9 1 1 0 1 1 1 1 AAA ATPase domain CbiA PF01656.18 gi|452206936|ref|YP_007487058.1| - 9.4e-05 21.8 0.0 0.00015 21.2 0.0 1.3 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain PRK PF00485.13 gi|452206936|ref|YP_007487058.1| - 0.00035 20.2 0.0 0.00055 19.5 0.0 1.3 1 0 0 1 1 1 1 Phosphoribulokinase / Uridine kinase family AAA_17 PF13207.1 gi|452206936|ref|YP_007487058.1| - 0.00035 21.3 0.0 0.00079 20.2 0.0 1.7 1 1 0 1 1 1 1 AAA domain cobW PF02492.14 gi|452206936|ref|YP_007487058.1| - 0.00057 19.3 0.0 0.00076 18.9 0.0 1.3 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain Zeta_toxin PF06414.7 gi|452206936|ref|YP_007487058.1| - 0.0011 18.0 0.0 0.0018 17.4 0.0 1.2 1 0 0 1 1 1 1 Zeta toxin AAA_5 PF07728.9 gi|452206936|ref|YP_007487058.1| - 0.0012 18.5 0.0 0.0021 17.7 0.0 1.3 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_29 PF13555.1 gi|452206936|ref|YP_007487058.1| - 0.002 17.6 0.1 0.0037 16.7 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_33 PF13671.1 gi|452206936|ref|YP_007487058.1| - 0.0022 17.8 0.1 0.0034 17.2 0.1 1.4 1 1 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|452206936|ref|YP_007487058.1| - 0.0022 17.6 0.0 0.0036 16.9 0.0 1.3 1 0 0 1 1 1 1 NACHT domain ABC_tran PF00005.22 gi|452206936|ref|YP_007487058.1| - 0.0039 17.4 0.0 0.0048 17.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter DUF258 PF03193.11 gi|452206936|ref|YP_007487058.1| - 0.0046 16.1 0.0 0.0072 15.5 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_19 PF13245.1 gi|452206936|ref|YP_007487058.1| - 0.0054 16.4 1.5 0.036 13.8 1.0 2.3 1 1 0 1 1 1 1 Part of AAA domain UPF0079 PF02367.12 gi|452206936|ref|YP_007487058.1| - 0.0062 16.1 0.0 0.0097 15.5 0.0 1.2 1 0 0 1 1 1 1 Uncharacterised P-loop hydrolase UPF0079 AAA_30 PF13604.1 gi|452206936|ref|YP_007487058.1| - 0.0075 15.8 0.1 0.011 15.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|452206936|ref|YP_007487058.1| - 0.0086 16.3 0.0 0.019 15.2 0.0 1.5 2 0 0 2 2 1 1 AAA domain AAA_25 PF13481.1 gi|452206936|ref|YP_007487058.1| - 0.0088 15.4 0.3 0.021 14.2 0.2 1.7 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|452206936|ref|YP_007487058.1| - 0.0095 15.9 0.1 0.023 14.6 0.1 1.7 1 1 0 1 1 1 1 AAA domain ATP_bind_1 PF03029.12 gi|452206936|ref|YP_007487058.1| - 0.015 14.8 0.0 0.022 14.2 0.0 1.2 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_10 PF12846.2 gi|452206936|ref|YP_007487058.1| - 0.015 14.7 0.0 0.039 13.3 0.0 1.6 2 0 0 2 2 2 0 AAA-like domain AAA_22 PF13401.1 gi|452206936|ref|YP_007487058.1| - 0.017 15.2 0.0 0.021 14.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain NTPase_1 PF03266.10 gi|452206936|ref|YP_007487058.1| - 0.017 14.8 0.0 0.03 14.0 0.0 1.4 1 0 0 1 1 1 0 NTPase RNA_helicase PF00910.17 gi|452206936|ref|YP_007487058.1| - 0.021 14.9 0.0 0.03 14.5 0.0 1.2 1 0 0 1 1 1 0 RNA helicase AAA PF00004.24 gi|452206936|ref|YP_007487058.1| - 0.032 14.4 0.0 0.046 13.9 0.0 1.3 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Miro PF08477.8 gi|452206936|ref|YP_007487058.1| - 0.032 14.7 0.0 0.049 14.1 0.0 1.3 1 0 0 1 1 1 0 Miro-like protein AAA_26 PF13500.1 gi|452206936|ref|YP_007487058.1| - 0.034 13.7 0.0 0.061 12.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.1 gi|452206936|ref|YP_007487058.1| - 0.044 14.1 0.0 0.056 13.7 0.0 1.1 1 0 0 1 1 1 0 AAA domain ArgK PF03308.11 gi|452206936|ref|YP_007487058.1| - 0.045 12.5 0.0 0.075 11.8 0.0 1.3 1 0 0 1 1 1 0 ArgK protein Septin PF00735.13 gi|452206936|ref|YP_007487058.1| - 0.049 12.6 0.0 0.064 12.2 0.0 1.1 1 0 0 1 1 1 0 Septin MMR_HSR1 PF01926.18 gi|452206936|ref|YP_007487058.1| - 0.05 13.5 0.0 0.082 12.8 0.0 1.5 1 1 0 1 1 1 0 50S ribosome-binding GTPase T2SE PF00437.15 gi|452206936|ref|YP_007487058.1| - 0.075 11.9 0.0 0.14 10.9 0.0 1.4 2 0 0 2 2 2 0 Type II/IV secretion system protein NB-ARC PF00931.17 gi|452206936|ref|YP_007487058.1| - 0.21 10.3 0.0 0.31 9.8 0.0 1.1 1 0 0 1 1 1 0 NB-ARC domain MaoC_dehydratas PF01575.14 gi|452206937|ref|YP_007487059.1| - 3.5e-17 61.9 0.0 4.6e-17 61.5 0.0 1.1 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.1 gi|452206937|ref|YP_007487059.1| - 4.8e-07 29.6 0.0 7.6e-07 28.9 0.0 1.3 1 0 0 1 1 1 1 N-terminal half of MaoC dehydratase FabA PF07977.8 gi|452206937|ref|YP_007487059.1| - 0.023 14.1 0.0 0.038 13.4 0.0 1.4 2 0 0 2 2 2 0 FabA-like domain 4HBT PF03061.17 gi|452206937|ref|YP_007487059.1| - 0.078 13.1 0.0 0.18 11.9 0.0 1.7 2 0 0 2 2 2 0 Thioesterase superfamily 4HBT_2 PF13279.1 gi|452206937|ref|YP_007487059.1| - 0.13 12.7 0.2 6.1 7.3 0.0 2.2 1 1 1 2 2 2 0 Thioesterase-like superfamily Mnd1 PF03962.10 gi|452206939|ref|YP_007487061.1| - 0.019 14.6 2.9 0.029 14.0 2.0 1.2 1 0 0 1 1 1 0 Mnd1 family eRF1_2 PF03464.10 gi|452206939|ref|YP_007487061.1| - 0.029 14.6 0.0 0.047 14.0 0.0 1.3 1 0 0 1 1 1 0 eRF1 domain 2 ADIP PF11559.3 gi|452206939|ref|YP_007487061.1| - 0.032 14.1 1.9 0.053 13.4 1.3 1.3 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding DUF4407 PF14362.1 gi|452206939|ref|YP_007487061.1| - 0.31 9.9 3.1 0.52 9.2 2.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) Fmp27_WPPW PF10359.4 gi|452206939|ref|YP_007487061.1| - 0.34 9.2 1.2 0.5 8.7 0.8 1.2 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain DUF1192 PF06698.6 gi|452206939|ref|YP_007487061.1| - 0.57 10.0 11.4 1.5 8.6 5.1 2.8 1 1 1 2 2 2 0 Protein of unknown function (DUF1192) IncA PF04156.9 gi|452206939|ref|YP_007487061.1| - 0.78 9.2 4.1 1.4 8.4 2.8 1.3 1 0 0 1 1 1 0 IncA protein HalX PF08663.5 gi|452206939|ref|YP_007487061.1| - 0.91 9.5 14.0 0.22 11.5 1.3 3.0 2 1 1 3 3 3 0 HalX domain PspB PF06667.7 gi|452206939|ref|YP_007487061.1| - 1.3 9.0 5.4 2.6 8.0 0.1 2.3 1 1 1 2 2 2 0 Phage shock protein B PspA_IM30 PF04012.7 gi|452206939|ref|YP_007487061.1| - 4.4 6.5 12.8 2.1 7.6 7.0 1.8 2 1 0 2 2 2 0 PspA/IM30 family GreA_GreB_N PF03449.10 gi|452206939|ref|YP_007487061.1| - 4.5 7.4 11.6 16 5.6 5.3 2.8 2 1 0 2 2 2 0 Transcription elongation factor, N-terminal DUF4140 PF13600.1 gi|452206939|ref|YP_007487061.1| - 6.6 7.2 11.1 25 5.4 2.2 2.7 1 1 1 2 2 2 0 N-terminal domain of unknown function (DUF4140) CMD PF02627.15 gi|452206941|ref|YP_007487063.1| - 0.029 14.1 0.8 0.074 12.8 0.6 1.6 1 0 0 1 1 1 0 Carboxymuconolactone decarboxylase family Atg14 PF10186.4 gi|452206941|ref|YP_007487063.1| - 0.088 11.7 0.8 0.11 11.3 0.5 1.1 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 PRC PF05239.11 gi|452206942|ref|YP_007487064.1| - 6.9e-11 41.8 0.0 7.6e-11 41.7 0.0 1.0 1 0 0 1 1 1 1 PRC-barrel domain Glycolipid_bind PF06475.6 gi|452206942|ref|YP_007487064.1| - 0.055 12.6 0.0 0.064 12.3 0.0 1.0 1 0 0 1 1 1 0 Putative glycolipid-binding PIN PF01850.16 gi|452206943|ref|YP_007487065.1| - 0.0002 21.7 1.7 0.00051 20.3 0.2 1.9 1 1 1 2 2 2 1 PIN domain UPF0278 PF08745.6 gi|452206943|ref|YP_007487065.1| - 0.00042 19.6 0.8 0.00084 18.6 0.3 1.6 1 1 1 2 2 2 1 UPF0278 family DUF4411 PF14367.1 gi|452206943|ref|YP_007487065.1| - 0.0011 18.7 0.2 0.0097 15.6 0.1 2.0 1 1 0 1 1 1 1 Domain of unknown function (DUF4411) DZR PF12773.2 gi|452206943|ref|YP_007487065.1| - 0.056 13.2 0.5 0.087 12.6 0.3 1.2 1 0 0 1 1 1 0 Double zinc ribbon zf-C2H2 PF00096.21 gi|452206943|ref|YP_007487065.1| - 0.34 11.3 3.1 0.85 10.0 0.1 2.3 1 1 1 2 2 2 0 Zinc finger, C2H2 type Zn-ribbon_8 PF09723.5 gi|452206943|ref|YP_007487065.1| - 0.42 10.5 4.4 3.9 7.5 3.1 2.2 1 1 0 1 1 1 0 Zinc ribbon domain Abi PF02517.11 gi|452206944|ref|YP_007487066.1| - 7.1e-16 58.1 5.0 7.1e-16 58.1 3.5 2.5 2 1 0 2 2 2 1 CAAX protease self-immunity DUF2177 PF09945.4 gi|452206944|ref|YP_007487066.1| - 0.026 14.5 1.5 0.026 14.5 1.0 2.9 3 0 0 3 3 3 0 Predicted membrane protein (DUF2177) NADH-u_ox-rdase PF10785.4 gi|452206944|ref|YP_007487066.1| - 6.1 7.1 7.4 7.5 6.8 0.2 2.7 3 0 0 3 3 3 0 NADH-ubiquinone oxidoreductase complex I, 21 kDa subunit PrgI PF12666.2 gi|452206944|ref|YP_007487066.1| - 6.8 6.9 14.0 0.54 10.4 1.4 3.1 2 1 1 3 3 3 0 PrgI family protein PGI PF00342.14 gi|452206945|ref|YP_007487067.1| - 3.6e-45 154.2 0.0 5.1e-45 153.8 0.0 1.1 1 0 0 1 1 1 1 Phosphoglucose isomerase TPR_7 PF13176.1 gi|452206947|ref|YP_007487069.1| - 0.93 9.4 3.4 8.2 6.4 0.3 2.8 2 0 0 2 2 2 0 Tetratricopeptide repeat Ribosomal_S13_N PF08069.7 gi|452206948|ref|YP_007487070.1| - 3.5e-22 78.0 0.1 6.2e-22 77.2 0.0 1.4 1 0 0 1 1 1 1 Ribosomal S13/S15 N-terminal domain Ribosomal_S15 PF00312.17 gi|452206948|ref|YP_007487070.1| - 4.7e-22 77.5 0.2 7.2e-22 76.9 0.1 1.3 1 0 0 1 1 1 1 Ribosomal protein S15 Pcc1 PF09341.5 gi|452206950|ref|YP_007487072.1| - 0.11 12.5 0.0 0.14 12.2 0.0 1.2 1 0 0 1 1 1 0 Transcription factor Pcc1 Ribosomal_S3Ae PF01015.13 gi|452206951|ref|YP_007487073.1| - 2.3e-67 226.0 0.5 2.8e-67 225.8 0.3 1.0 1 0 0 1 1 1 1 Ribosomal S3Ae family UPF0146 PF03686.8 gi|452206951|ref|YP_007487073.1| - 0.0096 15.7 0.1 0.026 14.3 0.1 1.8 1 1 1 2 2 2 1 Uncharacterised protein family (UPF0146) Thymidylate_kin PF02223.12 gi|452206952|ref|YP_007487074.1| - 1.4e-38 132.1 0.0 1.6e-38 131.9 0.0 1.0 1 0 0 1 1 1 1 Thymidylate kinase AAA_28 PF13521.1 gi|452206952|ref|YP_007487074.1| - 0.002 18.1 0.1 0.0032 17.4 0.1 1.4 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|452206952|ref|YP_007487074.1| - 0.0048 16.7 0.0 0.0092 15.8 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|452206952|ref|YP_007487074.1| - 0.0068 16.7 0.0 0.0096 16.2 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|452206952|ref|YP_007487074.1| - 0.04 14.7 0.4 0.087 13.6 0.3 1.9 1 1 0 1 1 1 0 AAA domain AsnC_trans_reg PF01037.16 gi|452206953|ref|YP_007487075.1| - 1.2e-07 31.3 0.3 1.3e-07 31.1 0.2 1.1 1 0 0 1 1 1 1 AsnC family Arg_repressor_C PF02863.13 gi|452206953|ref|YP_007487075.1| - 0.05 13.0 0.3 0.058 12.8 0.2 1.2 1 0 0 1 1 1 0 Arginine repressor, C-terminal domain TrkA_N PF02254.13 gi|452206954|ref|YP_007487076.1| - 1.3e-23 83.2 0.1 2e-23 82.5 0.0 1.3 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.16 gi|452206954|ref|YP_007487076.1| - 1.2e-12 47.2 0.2 2.7e-12 46.1 0.1 1.6 1 0 0 1 1 1 1 TrkA-C domain NAD_binding_10 PF13460.1 gi|452206954|ref|YP_007487076.1| - 5.2e-05 23.3 0.7 8.6e-05 22.6 0.1 1.6 2 0 0 2 2 2 1 NADH(P)-binding FAD_binding_3 PF01494.14 gi|452206954|ref|YP_007487076.1| - 0.00093 18.3 0.0 0.0013 17.9 0.0 1.1 1 0 0 1 1 1 1 FAD binding domain UDPG_MGDP_dh_N PF03721.9 gi|452206954|ref|YP_007487076.1| - 0.0013 18.1 0.0 0.0023 17.3 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Pyr_redox_2 PF07992.9 gi|452206954|ref|YP_007487076.1| - 0.0036 17.2 0.0 0.054 13.3 0.0 2.1 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_7 PF13241.1 gi|452206954|ref|YP_007487076.1| - 0.0059 16.8 0.5 0.013 15.7 0.0 1.8 2 0 0 2 2 2 1 Putative NAD(P)-binding DAO PF01266.19 gi|452206954|ref|YP_007487076.1| - 0.0082 15.0 0.0 0.016 14.1 0.0 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase Saccharop_dh PF03435.13 gi|452206954|ref|YP_007487076.1| - 0.017 14.0 0.1 0.022 13.7 0.1 1.1 1 0 0 1 1 1 0 Saccharopine dehydrogenase ApbA PF02558.11 gi|452206954|ref|YP_007487076.1| - 0.027 13.9 0.0 0.046 13.1 0.0 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA CPSase_L_chain PF00289.17 gi|452206954|ref|YP_007487076.1| - 0.039 14.0 0.0 0.1 12.7 0.0 1.8 2 0 0 2 2 2 0 Carbamoyl-phosphate synthase L chain, N-terminal domain NmrA PF05368.8 gi|452206954|ref|YP_007487076.1| - 0.054 12.7 0.1 0.099 11.8 0.0 1.4 2 0 0 2 2 2 0 NmrA-like family NAD_Gly3P_dh_N PF01210.18 gi|452206954|ref|YP_007487076.1| - 0.054 13.2 0.0 0.094 12.4 0.0 1.5 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 3HCDH_N PF02737.13 gi|452206954|ref|YP_007487076.1| - 0.068 12.8 0.0 0.14 11.8 0.0 1.5 1 1 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HI0933_like PF03486.9 gi|452206954|ref|YP_007487076.1| - 0.092 11.1 0.0 0.13 10.6 0.0 1.2 1 0 0 1 1 1 0 HI0933-like protein AlaDh_PNT_C PF01262.16 gi|452206954|ref|YP_007487076.1| - 0.13 11.8 0.0 0.2 11.2 0.0 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain AsnC_trans_reg PF01037.16 gi|452206955|ref|YP_007487077.1| - 5.1e-11 42.1 0.0 5.7e-11 41.9 0.0 1.0 1 0 0 1 1 1 1 AsnC family CSD PF00313.17 gi|452206956|ref|YP_007487078.1| - 3.1e-17 62.1 0.1 4.2e-17 61.6 0.1 1.2 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain S1-like PF14444.1 gi|452206956|ref|YP_007487078.1| - 0.019 14.6 0.9 0.035 13.8 0.7 1.6 1 1 0 1 1 1 0 S1-like Rho_RNA_bind PF07497.7 gi|452206956|ref|YP_007487078.1| - 0.072 12.7 0.2 0.074 12.6 0.1 1.1 1 0 0 1 1 1 0 Rho termination factor, RNA-binding domain OB_RNB PF08206.6 gi|452206956|ref|YP_007487078.1| - 0.18 11.3 2.9 0.24 10.9 2.0 1.3 1 0 0 1 1 1 0 Ribonuclease B OB domain TFIIB PF00382.14 gi|452206957|ref|YP_007487079.1| - 7e-46 153.9 2.7 1.2e-22 79.4 0.2 2.2 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|452206957|ref|YP_007487079.1| - 2.8e-14 52.1 3.1 4.9e-14 51.3 2.1 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding HTH_23 PF13384.1 gi|452206957|ref|YP_007487079.1| - 0.011 15.3 1.3 0.19 11.3 0.1 3.1 3 0 0 3 3 3 0 Homeodomain-like domain Sigma70_r4 PF04545.11 gi|452206957|ref|YP_007487079.1| - 0.013 14.8 2.0 0.14 11.5 0.1 3.5 3 1 1 4 4 4 0 Sigma-70, region 4 Cyclin_C PF02984.14 gi|452206957|ref|YP_007487079.1| - 0.023 14.5 0.0 0.49 10.3 0.0 2.2 2 0 0 2 2 2 0 Cyclin, C-terminal domain Cyclin_N PF00134.18 gi|452206957|ref|YP_007487079.1| - 0.072 12.6 0.0 0.25 10.9 0.0 1.9 3 0 0 3 3 3 0 Cyclin, N-terminal domain Zn-ribbon_8 PF09723.5 gi|452206957|ref|YP_007487079.1| - 2.5 8.1 5.2 4.2 7.3 0.7 2.5 1 1 0 2 2 2 0 Zinc ribbon domain Aldedh PF00171.17 gi|452206958|ref|YP_007487080.1| - 6.8e-150 499.4 0.0 8.2e-150 499.1 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.9 gi|452206958|ref|YP_007487080.1| - 0.0006 18.6 0.0 0.00093 18.0 0.0 1.2 1 0 0 1 1 1 1 Acyl-CoA reductase (LuxC) HTH_AsnC-type PF13404.1 gi|452206959|ref|YP_007487081.1| - 8.7e-18 63.5 2.8 8.3e-17 60.4 1.4 2.2 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.1 gi|452206959|ref|YP_007487081.1| - 5.2e-16 57.7 0.0 1.9e-15 55.9 0.1 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding AsnC_trans_reg PF01037.16 gi|452206959|ref|YP_007487081.1| - 1.8e-08 33.9 0.7 1.8e-08 33.9 0.5 1.5 2 0 0 2 2 2 1 AsnC family HTH_20 PF12840.2 gi|452206959|ref|YP_007487081.1| - 7.2e-07 28.9 0.0 1.4e-06 28.0 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|452206959|ref|YP_007487081.1| - 5.1e-05 22.8 0.1 8.7e-05 22.0 0.0 1.4 1 0 0 1 1 1 1 HTH domain HTH_IclR PF09339.5 gi|452206959|ref|YP_007487081.1| - 0.00011 21.6 0.0 0.00026 20.4 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|452206959|ref|YP_007487081.1| - 0.00034 19.9 0.0 0.00074 18.9 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 MarR_2 PF12802.2 gi|452206959|ref|YP_007487081.1| - 0.00038 20.0 0.2 0.00078 19.0 0.2 1.5 1 1 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|452206959|ref|YP_007487081.1| - 0.00048 20.3 0.1 0.0031 17.8 0.0 2.1 1 1 1 2 2 2 1 Winged helix DNA-binding domain MarR PF01047.17 gi|452206959|ref|YP_007487081.1| - 0.0008 19.0 0.1 0.004 16.8 0.0 2.0 2 0 0 2 2 2 1 MarR family HTH_Tnp_ISL3 PF13542.1 gi|452206959|ref|YP_007487081.1| - 0.0019 17.3 0.0 0.005 15.9 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 NapD PF03927.8 gi|452206959|ref|YP_007487081.1| - 0.002 17.9 0.1 0.0036 17.1 0.1 1.5 1 0 0 1 1 1 1 NapD protein HrcA_DNA-bdg PF03444.10 gi|452206959|ref|YP_007487081.1| - 0.0022 17.3 0.0 0.0087 15.4 0.0 2.0 2 1 1 3 3 3 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Sigma70_r4 PF04545.11 gi|452206959|ref|YP_007487081.1| - 0.0024 17.1 0.2 0.0052 16.0 0.1 1.7 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_DeoR PF08220.7 gi|452206959|ref|YP_007487081.1| - 0.0036 16.8 0.2 0.0063 16.0 0.1 1.4 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_23 PF13384.1 gi|452206959|ref|YP_007487081.1| - 0.0036 16.8 0.0 0.0057 16.2 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain DUF746 PF05344.6 gi|452206959|ref|YP_007487081.1| - 0.0057 16.1 0.1 0.12 11.9 0.0 2.2 2 0 0 2 2 2 1 Domain of Unknown Function (DUF746) HTH_28 PF13518.1 gi|452206959|ref|YP_007487081.1| - 0.014 15.3 0.0 0.025 14.5 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_5 PF01022.15 gi|452206959|ref|YP_007487081.1| - 0.033 13.8 0.0 0.052 13.2 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|452206959|ref|YP_007487081.1| - 0.033 13.8 0.0 0.05 13.3 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_Mga PF08280.6 gi|452206959|ref|YP_007487081.1| - 0.067 12.9 0.0 0.16 11.7 0.0 1.6 1 1 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain LexA_DNA_bind PF01726.11 gi|452206959|ref|YP_007487081.1| - 0.096 12.2 0.0 0.19 11.3 0.0 1.5 1 1 0 1 1 1 0 LexA DNA binding domain CPSase_sm_chain PF00988.17 gi|452206960|ref|YP_007487082.1| - 9e-38 128.7 0.0 2.9e-37 127.1 0.0 1.8 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase small chain, CPSase domain GATase PF00117.23 gi|452206960|ref|YP_007487082.1| - 2.6e-33 115.0 0.0 3.6e-33 114.6 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|452206960|ref|YP_007487082.1| - 5.8e-06 25.9 0.2 0.00094 18.6 0.1 2.2 1 1 0 1 1 1 1 Peptidase C26 DJ-1_PfpI PF01965.19 gi|452206960|ref|YP_007487082.1| - 0.0041 16.5 0.1 0.009 15.4 0.0 1.7 2 0 0 2 2 2 1 DJ-1/PfpI family Bac_rhodopsin PF01036.13 gi|452206961|ref|YP_007487083.1| - 4.4e-45 153.6 22.1 5.3e-45 153.4 15.3 1.0 1 0 0 1 1 1 1 Bacteriorhodopsin-like protein IncA PF04156.9 gi|452206961|ref|YP_007487083.1| - 5.7 6.4 6.3 3 7.3 0.4 2.4 2 0 0 2 2 2 0 IncA protein MCPsignal PF00015.16 gi|452206962|ref|YP_007487084.1| - 2.8e-31 108.7 19.0 4e-31 108.2 13.2 1.1 1 0 0 1 1 1 1 Methyl-accepting chemotaxis protein (MCP) signalling domain Syntaxin-6_N PF09177.6 gi|452206962|ref|YP_007487084.1| - 3.8e-06 27.2 2.8 0.00091 19.5 1.6 2.5 2 1 0 2 2 2 1 Syntaxin 6, N-terminal WXG100 PF06013.7 gi|452206962|ref|YP_007487084.1| - 0.00024 21.0 8.2 1.1 9.3 1.0 4.3 1 1 4 5 5 5 1 Proteins of 100 residues with WXG DUF948 PF06103.6 gi|452206962|ref|YP_007487084.1| - 0.00044 20.0 5.9 0.0038 17.0 0.8 2.4 1 1 1 2 2 2 1 Bacterial protein of unknown function (DUF948) DUF3584 PF12128.3 gi|452206962|ref|YP_007487084.1| - 0.00077 16.9 5.7 0.00091 16.7 4.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) Laminin_II PF06009.7 gi|452206962|ref|YP_007487084.1| - 0.0013 18.4 7.6 0.021 14.5 1.1 2.4 1 1 2 3 3 3 2 Laminin Domain II Tropomyosin PF00261.15 gi|452206962|ref|YP_007487084.1| - 0.002 17.2 9.5 0.0027 16.8 6.6 1.1 1 0 0 1 1 1 1 Tropomyosin DUF4047 PF13256.1 gi|452206962|ref|YP_007487084.1| - 0.002 18.0 0.5 0.0029 17.5 0.4 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4047) BLOC1_2 PF10046.4 gi|452206962|ref|YP_007487084.1| - 0.0022 18.1 2.4 0.021 14.9 1.1 2.5 1 1 1 2 2 2 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 Ferritin PF00210.19 gi|452206962|ref|YP_007487084.1| - 0.0028 17.4 1.8 0.007 16.1 1.2 1.7 1 1 0 1 1 1 1 Ferritin-like domain ApoLp-III PF07464.6 gi|452206962|ref|YP_007487084.1| - 0.0035 17.3 5.1 1.7 8.6 0.1 2.5 1 1 1 2 2 2 2 Apolipophorin-III precursor (apoLp-III) AAA_13 PF13166.1 gi|452206962|ref|YP_007487084.1| - 0.0039 15.7 1.1 0.0046 15.5 0.8 1.1 1 0 0 1 1 1 1 AAA domain ALIX_LYPXL_bnd PF13949.1 gi|452206962|ref|YP_007487084.1| - 0.0051 15.8 4.9 0.13 11.1 0.2 2.1 1 1 1 2 2 2 1 ALIX V-shaped domain binding to HIV DASH_Duo1 PF08651.5 gi|452206962|ref|YP_007487084.1| - 0.0054 16.2 2.2 2.1 8.0 0.1 2.5 1 1 1 2 2 2 0 DASH complex subunit Duo1 EzrA PF06160.7 gi|452206962|ref|YP_007487084.1| - 0.0064 14.7 4.3 0.0086 14.3 3.0 1.3 1 1 0 1 1 1 1 Septation ring formation regulator, EzrA V-SNARE_C PF12352.3 gi|452206962|ref|YP_007487084.1| - 0.0089 16.0 3.3 0.16 12.0 0.0 2.8 2 1 1 3 3 3 1 Snare region anchored in the vesicle membrane C-terminus Reo_sigmaC PF04582.7 gi|452206962|ref|YP_007487084.1| - 0.0092 15.1 2.6 0.013 14.6 1.8 1.3 1 0 0 1 1 1 1 Reovirus sigma C capsid protein Atg14 PF10186.4 gi|452206962|ref|YP_007487084.1| - 0.011 14.6 0.3 0.014 14.3 0.2 1.2 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 Filament PF00038.16 gi|452206962|ref|YP_007487084.1| - 0.011 15.1 6.4 0.02 14.3 4.0 1.6 1 1 0 1 1 1 0 Intermediate filament protein LXG PF04740.7 gi|452206962|ref|YP_007487084.1| - 0.012 15.3 6.5 0.12 12.1 0.4 2.1 1 1 1 2 2 2 0 LXG domain of WXG superfamily APG6 PF04111.7 gi|452206962|ref|YP_007487084.1| - 0.019 14.0 1.9 0.025 13.6 1.3 1.1 1 0 0 1 1 1 0 Autophagy protein Apg6 Baculo_PEP_C PF04513.7 gi|452206962|ref|YP_007487084.1| - 0.02 14.7 3.5 0.76 9.5 2.0 2.4 1 1 1 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus ING PF12998.2 gi|452206962|ref|YP_007487084.1| - 0.02 15.1 2.2 0.049 13.9 1.0 1.9 1 1 1 2 2 2 0 Inhibitor of growth proteins N-terminal histone-binding ATG16 PF08614.6 gi|452206962|ref|YP_007487084.1| - 0.022 14.5 5.6 0.11 12.3 3.4 1.9 1 1 1 2 2 2 0 Autophagy protein 16 (ATG16) Syntaxin PF00804.20 gi|452206962|ref|YP_007487084.1| - 0.025 14.7 5.9 0.38 10.9 2.6 2.3 1 1 1 2 2 2 0 Syntaxin RmuC PF02646.11 gi|452206962|ref|YP_007487084.1| - 0.033 13.0 0.8 0.17 10.6 0.1 2.0 1 1 2 3 3 3 0 RmuC family YjcZ PF13990.1 gi|452206962|ref|YP_007487084.1| - 0.047 12.8 2.1 0.38 9.8 0.3 2.1 1 1 1 2 2 2 0 YjcZ-like protein PhageMin_Tail PF10145.4 gi|452206962|ref|YP_007487084.1| - 0.051 13.2 7.0 0.064 12.8 4.2 1.5 1 1 0 1 1 1 0 Phage-related minor tail protein IncA PF04156.9 gi|452206962|ref|YP_007487084.1| - 0.059 12.9 3.4 0.13 11.8 2.4 1.7 1 1 0 1 1 1 0 IncA protein DUF1664 PF07889.7 gi|452206962|ref|YP_007487084.1| - 0.078 12.7 5.9 0.18 11.6 1.3 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) Mnd1 PF03962.10 gi|452206962|ref|YP_007487084.1| - 0.08 12.5 6.1 1.1 8.8 0.2 1.9 1 1 1 2 2 2 0 Mnd1 family FUSC PF04632.7 gi|452206962|ref|YP_007487084.1| - 0.083 11.3 3.1 0.097 11.0 2.1 1.1 1 0 0 1 1 1 0 Fusaric acid resistance protein family IFT57 PF10498.4 gi|452206962|ref|YP_007487084.1| - 0.083 11.6 0.4 0.097 11.3 0.3 1.2 1 0 0 1 1 1 0 Intra-flagellar transport protein 57 HisKA_3 PF07730.8 gi|452206962|ref|YP_007487084.1| - 0.085 13.2 10.3 1.7 9.0 0.5 3.3 1 1 2 3 3 3 0 Histidine kinase ISG65-75 PF11727.3 gi|452206962|ref|YP_007487084.1| - 0.09 11.8 8.2 0.079 11.9 4.5 1.7 1 1 1 2 2 2 0 Invariant surface glycoprotein Bacillus_HBL PF05791.6 gi|452206962|ref|YP_007487084.1| - 0.094 12.0 0.6 0.41 9.9 0.1 2.0 1 1 0 2 2 2 0 Bacillus haemolytic enterotoxin (HBL) MutS_II PF05188.12 gi|452206962|ref|YP_007487084.1| - 0.094 12.7 0.1 1.5 8.9 0.0 2.3 1 1 0 2 2 2 0 MutS domain II Use1 PF09753.4 gi|452206962|ref|YP_007487084.1| - 0.096 12.1 2.5 0.065 12.6 0.7 1.5 1 1 0 1 1 1 0 Membrane fusion protein Use1 Spc7 PF08317.6 gi|452206962|ref|YP_007487084.1| - 0.096 11.3 4.1 0.17 10.5 2.8 1.4 1 1 0 1 1 1 0 Spc7 kinetochore protein zf-C4H2 PF10146.4 gi|452206962|ref|YP_007487084.1| - 0.1 12.5 0.9 0.14 12.1 0.6 1.3 1 0 0 1 1 1 0 Zinc finger-containing protein Apolipoprotein PF01442.13 gi|452206962|ref|YP_007487084.1| - 0.11 12.0 5.0 0.22 11.0 3.5 1.5 1 1 0 1 1 1 0 Apolipoprotein A1/A4/E domain Barstar PF01337.13 gi|452206962|ref|YP_007487084.1| - 0.12 12.2 1.0 2.4 8.0 0.0 2.9 3 1 0 3 3 3 0 Barstar (barnase inhibitor) COG5 PF10392.4 gi|452206962|ref|YP_007487084.1| - 0.13 12.1 0.8 6.7 6.6 0.0 2.2 1 1 1 2 2 2 0 Golgi transport complex subunit 5 GldM_N PF12081.3 gi|452206962|ref|YP_007487084.1| - 0.16 11.4 2.8 0.63 9.5 0.2 2.1 1 1 1 2 2 2 0 GldM N-terminal domain AATF-Che1 PF13339.1 gi|452206962|ref|YP_007487084.1| - 0.18 11.9 1.8 1.1 9.4 1.2 2.0 1 1 0 1 1 1 0 Apoptosis antagonizing transcription factor DUF2365 PF10157.4 gi|452206962|ref|YP_007487084.1| - 0.19 11.5 2.4 0.42 10.4 0.8 1.9 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2365) AF0941-like PF14591.1 gi|452206962|ref|YP_007487084.1| - 0.19 11.7 3.1 1 9.4 0.6 2.2 1 1 1 2 2 2 0 AF0941-like DUF745 PF05335.8 gi|452206962|ref|YP_007487084.1| - 0.25 10.8 8.4 1.3 8.4 1.5 2.2 1 1 0 1 1 1 0 Protein of unknown function (DUF745) WEMBL PF05701.6 gi|452206962|ref|YP_007487084.1| - 0.28 9.6 11.9 0.081 11.3 2.9 2.0 1 1 1 2 2 2 0 Weak chloroplast movement under blue light COG2 PF06148.6 gi|452206962|ref|YP_007487084.1| - 0.3 10.9 4.3 2.8 7.8 0.2 2.7 1 1 2 3 3 3 0 COG (conserved oligomeric Golgi) complex component, COG2 Fib_alpha PF08702.5 gi|452206962|ref|YP_007487084.1| - 0.36 10.9 2.1 11 6.1 0.1 2.1 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family DUF2203 PF09969.4 gi|452206962|ref|YP_007487084.1| - 0.37 11.0 3.3 0.51 10.5 1.0 1.9 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2203) Hemerythrin PF01814.18 gi|452206962|ref|YP_007487084.1| - 0.37 10.9 7.0 4.8 7.3 1.1 3.0 1 1 1 2 2 2 0 Hemerythrin HHE cation binding domain Seryl_tRNA_N PF02403.17 gi|452206962|ref|YP_007487084.1| - 0.42 10.6 5.0 10 6.1 2.6 2.5 1 1 2 3 3 3 0 Seryl-tRNA synthetase N-terminal domain Cytochrom_B562 PF07361.6 gi|452206962|ref|YP_007487084.1| - 0.47 10.8 2.7 1.3 9.5 1.0 2.2 1 1 1 2 2 2 0 Cytochrome b562 SNARE PF05739.14 gi|452206962|ref|YP_007487084.1| - 0.53 10.0 9.7 3.2 7.5 0.6 3.5 1 1 2 3 3 3 0 SNARE domain TPR_MLP1_2 PF07926.7 gi|452206962|ref|YP_007487084.1| - 0.61 9.8 7.2 2.3 7.9 1.4 2.3 1 1 1 2 2 2 0 TPR/MLP1/MLP2-like protein V-SNARE PF05008.10 gi|452206962|ref|YP_007487084.1| - 0.64 10.2 6.8 0.41 10.8 0.4 3.0 1 1 3 4 4 4 0 Vesicle transport v-SNARE protein N-terminus DUF2580 PF10824.3 gi|452206962|ref|YP_007487084.1| - 0.65 10.3 14.5 0.22 11.8 1.1 3.0 1 1 2 3 3 2 0 Protein of unknown function (DUF2580) V_ATPase_I PF01496.14 gi|452206962|ref|YP_007487084.1| - 0.69 7.6 2.5 3.6 5.3 0.5 1.7 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family HisKA PF00512.20 gi|452206962|ref|YP_007487084.1| - 0.7 9.9 8.0 10 6.2 0.3 3.4 2 1 1 3 3 3 0 His Kinase A (phospho-acceptor) domain Myosin_tail_1 PF01576.14 gi|452206962|ref|YP_007487084.1| - 0.72 7.5 10.9 1.9 6.0 7.4 1.6 1 1 1 2 2 2 0 Myosin tail TMP_2 PF06791.8 gi|452206962|ref|YP_007487084.1| - 1.1 8.8 10.2 5.6 6.5 0.5 2.4 1 1 2 3 3 3 0 Prophage tail length tape measure protein TMF_TATA_bd PF12325.3 gi|452206962|ref|YP_007487084.1| - 1.3 8.7 6.5 1.8 8.2 3.8 1.7 1 1 0 1 1 1 0 TATA element modulatory factor 1 TATA binding Acyl-CoA_dh_C PF12806.2 gi|452206962|ref|YP_007487084.1| - 1.4 8.7 5.6 9 6.1 0.4 2.7 1 1 2 3 3 3 0 Acetyl-CoA dehydrogenase C-terminal like Prominin PF05478.6 gi|452206962|ref|YP_007487084.1| - 1.4 6.3 3.4 9 3.6 0.2 1.7 1 1 0 1 1 1 0 Prominin Ribosomal_S30AE PF02482.14 gi|452206962|ref|YP_007487084.1| - 1.9 8.9 5.4 1.1 9.7 1.3 2.0 1 1 1 2 2 2 0 Sigma 54 modulation protein / S30EA ribosomal protein DUF2959 PF11172.3 gi|452206962|ref|YP_007487084.1| - 2 8.1 6.2 0.84 9.3 1.3 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF2959) NPV_P10 PF05531.7 gi|452206962|ref|YP_007487084.1| - 2.6 8.3 6.3 7 6.9 1.2 3.0 1 1 1 2 2 2 0 Nucleopolyhedrovirus P10 protein DUF4404 PF14357.1 gi|452206962|ref|YP_007487084.1| - 2.8 8.4 10.5 7.8 6.9 1.8 3.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4404) Phage_GPO PF05929.6 gi|452206962|ref|YP_007487084.1| - 3.6 6.7 10.0 2 7.6 1.4 2.1 1 1 1 2 2 2 0 Phage capsid scaffolding protein (GPO) serine peptidase DUF883 PF05957.8 gi|452206962|ref|YP_007487084.1| - 3.7 8.0 12.2 2.4 8.5 2.0 2.9 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) Vps53_N PF04100.7 gi|452206962|ref|YP_007487084.1| - 4.3 6.0 8.0 4.4 5.9 4.1 1.9 1 1 1 2 2 2 0 Vps53-like, N-terminal Hpt PF01627.18 gi|452206962|ref|YP_007487084.1| - 5.8 7.0 8.3 28 4.8 1.2 3.1 1 1 3 4 4 4 0 Hpt domain DUF812 PF05667.6 gi|452206962|ref|YP_007487084.1| - 6.5 5.1 9.7 14 4.0 6.7 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF812) Phage_integrase PF00589.17 gi|452206963|ref|YP_007487085.1| - 5.9e-29 100.9 0.1 9.9e-28 96.9 0.1 2.2 1 1 0 1 1 1 1 Phage integrase family Phage_int_SAM_1 PF02899.12 gi|452206963|ref|YP_007487085.1| - 7.5e-08 32.4 0.9 7.9e-07 29.1 0.3 2.4 2 0 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.1 gi|452206963|ref|YP_007487085.1| - 0.0047 17.2 0.2 0.01 16.1 0.1 1.6 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain Lon_C PF05362.8 gi|452206963|ref|YP_007487085.1| - 0.17 11.1 0.0 0.96 8.7 0.0 1.9 2 0 0 2 2 2 0 Lon protease (S16) C-terminal proteolytic domain RPA_C PF08784.6 gi|452206964|ref|YP_007487086.1| - 7.6e-05 23.0 0.1 0.00013 22.2 0.0 1.4 1 0 0 1 1 1 1 Replication protein A C terminal Syntaxin-6_N PF09177.6 gi|452206964|ref|YP_007487086.1| - 0.00081 19.7 0.2 0.0016 18.8 0.1 1.6 1 1 0 1 1 1 1 Syntaxin 6, N-terminal TrmB PF01978.14 gi|452206964|ref|YP_007487086.1| - 0.0026 17.4 0.0 0.0044 16.6 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|452206964|ref|YP_007487086.1| - 0.0064 16.1 0.0 0.014 15.0 0.0 1.6 1 0 0 1 1 1 1 MarR family DUF742 PF05331.6 gi|452206964|ref|YP_007487086.1| - 0.0068 16.0 0.5 0.014 14.9 0.3 1.6 1 1 0 1 1 1 1 Protein of unknown function (DUF742) Fzo_mitofusin PF04799.8 gi|452206964|ref|YP_007487086.1| - 0.0072 15.7 0.2 0.01 15.2 0.1 1.2 1 0 0 1 1 1 1 fzo-like conserved region Rrf2 PF02082.15 gi|452206964|ref|YP_007487086.1| - 0.04 14.0 0.0 0.08 13.0 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator Fib_alpha PF08702.5 gi|452206964|ref|YP_007487086.1| - 0.044 13.9 0.1 0.07 13.2 0.1 1.4 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family FAD-SLDH PF12318.3 gi|452206964|ref|YP_007487086.1| - 0.069 12.8 0.3 0.087 12.5 0.2 1.3 1 0 0 1 1 1 0 Membrane bound FAD containing D-sorbitol dehydrogenase DUF2042 PF09743.4 gi|452206964|ref|YP_007487086.1| - 0.096 11.9 0.0 0.13 11.5 0.0 1.3 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2042) Tropomyosin_1 PF12718.2 gi|452206964|ref|YP_007487086.1| - 0.096 12.5 0.3 0.096 12.5 0.2 1.7 2 0 0 2 2 2 0 Tropomyosin like DUF3138 PF11336.3 gi|452206964|ref|YP_007487086.1| - 0.11 10.6 0.1 0.12 10.5 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3138) PDDEXK_1 PF12705.2 gi|452206966|ref|YP_007487088.1| - 1.8e-10 40.6 0.0 2.3e-10 40.2 0.0 1.2 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily Cas_Cas4 PF01930.12 gi|452206966|ref|YP_007487088.1| - 0.00063 19.7 0.0 0.0011 18.8 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function DUF83 BASP1 PF05466.7 gi|452206966|ref|YP_007487088.1| - 0.19 11.5 2.1 0.4 10.4 0.0 2.1 2 0 0 2 2 2 0 Brain acid soluble protein 1 (BASP1 protein) HTH_24 PF13412.1 gi|452206968|ref|YP_007487090.1| - 0.0013 18.0 0.0 0.0018 17.6 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|452206968|ref|YP_007487090.1| - 0.0036 16.9 0.0 0.0047 16.6 0.0 1.1 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_CodY PF08222.6 gi|452206968|ref|YP_007487090.1| - 0.013 14.7 0.0 0.018 14.3 0.0 1.2 1 0 0 1 1 1 0 CodY helix-turn-helix domain HTH_11 PF08279.7 gi|452206968|ref|YP_007487090.1| - 0.036 13.6 0.0 0.047 13.3 0.0 1.2 1 0 0 1 1 1 0 HTH domain HTH_IclR PF09339.5 gi|452206968|ref|YP_007487090.1| - 0.038 13.5 0.0 0.055 13.0 0.0 1.2 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_12 PF08461.5 gi|452206968|ref|YP_007487090.1| - 0.068 12.9 0.1 0.12 12.0 0.0 1.4 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain HTH_20 PF12840.2 gi|452206968|ref|YP_007487090.1| - 0.077 12.8 0.0 0.098 12.4 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain DUF2274 PF10038.4 gi|452206969|ref|YP_007487091.1| - 0.016 15.2 0.0 0.039 14.0 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2274) DDE_3 PF13358.1 gi|452206971|ref|YP_007487093.1| - 3.4e-26 91.7 0.0 7.1e-26 90.6 0.0 1.5 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_29 PF13551.1 gi|452206971|ref|YP_007487093.1| - 2.8e-20 72.5 0.1 7.3e-20 71.1 0.1 1.8 1 0 0 1 1 1 1 Winged helix-turn helix HTH_33 PF13592.1 gi|452206971|ref|YP_007487093.1| - 4.1e-20 71.0 0.1 4e-19 67.8 0.0 2.4 2 0 0 2 2 2 1 Winged helix-turn helix HTH_28 PF13518.1 gi|452206971|ref|YP_007487093.1| - 1.2e-10 41.1 1.7 1.6e-09 37.5 0.4 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_32 PF13565.1 gi|452206971|ref|YP_007487093.1| - 1.9e-10 41.3 2.5 8.5e-10 39.3 0.0 3.2 4 0 0 4 4 4 1 Homeodomain-like domain HTH_23 PF13384.1 gi|452206971|ref|YP_007487093.1| - 1.8e-07 30.5 0.1 5.4e-07 29.0 0.1 1.8 1 0 0 1 1 1 1 Homeodomain-like domain HTH_Tnp_IS630 PF01710.11 gi|452206971|ref|YP_007487093.1| - 1.4e-05 24.6 0.1 3.2e-05 23.5 0.1 1.5 1 0 0 1 1 1 1 Transposase rve PF00665.21 gi|452206971|ref|YP_007487093.1| - 0.00067 19.7 0.0 0.0023 18.0 0.0 1.9 2 0 0 2 2 2 1 Integrase core domain DDE_Tnp_ISAZ013 PF07592.6 gi|452206971|ref|YP_007487093.1| - 0.0009 18.0 0.0 0.097 11.3 0.0 2.3 2 0 0 2 2 2 1 Rhodopirellula transposase DDE domain HTH_36 PF13730.1 gi|452206971|ref|YP_007487093.1| - 0.00095 19.2 0.0 0.026 14.6 0.0 2.8 3 0 0 3 3 3 1 Helix-turn-helix domain HTH_38 PF13936.1 gi|452206971|ref|YP_007487093.1| - 0.0016 17.9 0.0 0.0038 16.7 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Tnp_1 PF01527.15 gi|452206971|ref|YP_007487093.1| - 0.0034 17.2 1.1 0.006 16.5 0.1 1.9 2 0 0 2 2 2 1 Transposase HTH_psq PF05225.11 gi|452206971|ref|YP_007487093.1| - 0.0048 16.4 0.0 0.017 14.6 0.0 2.0 2 0 0 2 2 2 1 helix-turn-helix, Psq domain HTH_11 PF08279.7 gi|452206971|ref|YP_007487093.1| - 0.014 15.0 0.2 0.055 13.1 0.0 1.9 2 0 0 2 2 2 0 HTH domain HTH_Tnp_Tc3_2 PF01498.13 gi|452206971|ref|YP_007487093.1| - 0.025 14.6 0.0 0.12 12.4 0.0 2.2 2 0 0 2 2 2 0 Transposase HTH_17 PF12728.2 gi|452206971|ref|YP_007487093.1| - 0.026 14.7 1.0 0.086 13.1 0.2 2.2 2 1 0 2 2 2 0 Helix-turn-helix domain Sigma70_ECF PF07638.6 gi|452206971|ref|YP_007487093.1| - 0.032 13.8 0.0 0.062 12.9 0.0 1.4 1 0 0 1 1 1 0 ECF sigma factor RIB43A PF05914.7 gi|452206971|ref|YP_007487093.1| - 0.037 12.6 0.6 0.053 12.1 0.4 1.2 1 0 0 1 1 1 0 RIB43A DUF387 PF04079.11 gi|452206971|ref|YP_007487093.1| - 0.085 12.2 0.0 0.24 10.7 0.0 1.8 1 1 0 1 1 1 0 Putative transcriptional regulators (Ypuh-like) HTH_Tnp_4 PF13613.1 gi|452206971|ref|YP_007487093.1| - 0.13 11.7 0.0 0.83 9.2 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix of DDE superfamily endonuclease DNA_methylase PF00145.12 gi|452206972|ref|YP_007487094.1| - 4.9e-41 140.9 0.0 5.6e-41 140.7 0.0 1.0 1 0 0 1 1 1 1 C-5 cytosine-specific DNA methylase Methyltransf_15 PF09445.5 gi|452206972|ref|YP_007487094.1| - 0.074 12.6 0.0 0.13 11.8 0.0 1.3 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase DNA_methylase PF00145.12 gi|452206973|ref|YP_007487095.1| - 4.5e-47 160.8 0.0 5.2e-47 160.5 0.0 1.0 1 0 0 1 1 1 1 C-5 cytosine-specific DNA methylase Methyltransf_26 PF13659.1 gi|452206973|ref|YP_007487095.1| - 0.0043 17.0 0.0 0.009 16.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain PLDc_2 PF13091.1 gi|452206978|ref|YP_007487100.1| - 2.2e-15 56.5 0.0 4.3e-15 55.5 0.0 1.5 1 0 0 1 1 1 1 PLD-like domain PLDc PF00614.17 gi|452206978|ref|YP_007487100.1| - 2.1e-05 24.1 0.0 6e-05 22.6 0.0 1.8 1 0 0 1 1 1 1 Phospholipase D Active site motif DUF1998 PF09369.5 gi|452206979|ref|YP_007487101.1| - 1.3e-06 28.8 0.3 4.7e-06 27.0 0.2 2.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1998) DUF1108 PF06531.6 gi|452206979|ref|YP_007487101.1| - 0.014 15.5 0.1 0.16 12.1 0.2 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1108) Helicase_C PF00271.26 gi|452206980|ref|YP_007487102.1| - 2.7e-10 39.9 0.0 1.4e-09 37.6 0.0 2.3 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DEAD PF00270.24 gi|452206980|ref|YP_007487102.1| - 0.028 13.9 0.0 0.74 9.2 0.0 2.4 2 0 0 2 2 2 0 DEAD/DEAH box helicase ApoLp-III PF07464.6 gi|452206980|ref|YP_007487102.1| - 0.34 10.9 1.6 3.4 7.6 0.2 2.5 2 0 0 2 2 2 0 Apolipophorin-III precursor (apoLp-III) DNA_ligase_ZBD PF03119.11 gi|452206980|ref|YP_007487102.1| - 0.42 10.3 4.4 1.3 8.8 3.0 1.9 1 0 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain HEAT_2 PF13646.1 gi|452206981|ref|YP_007487103.1| - 0.00062 19.9 8.0 5.2 7.4 0.1 4.9 5 0 0 5 5 5 3 HEAT repeats Adaptin_N PF01602.15 gi|452206981|ref|YP_007487103.1| - 0.077 11.3 0.1 0.96 7.6 0.0 2.5 2 0 0 2 2 2 0 Adaptin N terminal region DUF192 PF02643.10 gi|452206982|ref|YP_007487104.1| - 1.1e-28 99.0 0.0 1.3e-28 98.7 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized ACR, COG1430 DUF1905 PF08922.6 gi|452206982|ref|YP_007487104.1| - 0.046 13.2 0.0 0.088 12.3 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1905) ABC_tran PF00005.22 gi|452206983|ref|YP_007487105.1| - 4e-36 124.3 0.0 7.2e-36 123.5 0.0 1.4 1 0 0 1 1 1 1 ABC transporter ABC_membrane PF00664.18 gi|452206983|ref|YP_007487105.1| - 4.4e-35 121.4 1.1 5.8e-35 121.0 0.8 1.1 1 0 0 1 1 1 1 ABC transporter transmembrane region AAA_16 PF13191.1 gi|452206983|ref|YP_007487105.1| - 8.2e-06 25.9 0.1 2e-05 24.6 0.1 1.6 1 0 0 1 1 1 1 AAA ATPase domain Zeta_toxin PF06414.7 gi|452206983|ref|YP_007487105.1| - 0.00014 21.0 0.0 0.00028 20.0 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin DUF258 PF03193.11 gi|452206983|ref|YP_007487105.1| - 0.00045 19.4 0.0 0.00087 18.5 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_22 PF13401.1 gi|452206983|ref|YP_007487105.1| - 0.00058 20.0 0.1 0.0041 17.2 0.1 2.3 1 1 0 1 1 1 1 AAA domain AAA_21 PF13304.1 gi|452206983|ref|YP_007487105.1| - 0.00061 19.8 0.0 0.0052 16.7 0.0 2.1 2 0 0 2 2 2 1 AAA domain SMC_N PF02463.14 gi|452206983|ref|YP_007487105.1| - 0.002 17.3 0.1 0.11 11.6 0.0 2.2 1 1 1 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_17 PF13207.1 gi|452206983|ref|YP_007487105.1| - 0.0024 18.7 0.2 0.0066 17.2 0.1 1.8 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|452206983|ref|YP_007487105.1| - 0.0042 16.5 0.0 0.01 15.3 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_membrane_3 PF13748.1 gi|452206983|ref|YP_007487105.1| - 0.0065 15.5 0.5 1.7 7.6 0.1 2.2 2 0 0 2 2 2 2 ABC transporter transmembrane region AAA_10 PF12846.2 gi|452206983|ref|YP_007487105.1| - 0.009 15.4 0.3 0.22 10.9 0.1 2.5 2 1 0 2 2 2 1 AAA-like domain AAA_18 PF13238.1 gi|452206983|ref|YP_007487105.1| - 0.017 15.4 0.0 0.038 14.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|452206983|ref|YP_007487105.1| - 0.029 14.2 0.0 0.077 12.8 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA PF00004.24 gi|452206983|ref|YP_007487105.1| - 0.041 14.0 0.0 0.47 10.6 0.0 2.5 2 1 0 2 2 1 0 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|452206983|ref|YP_007487105.1| - 0.054 13.2 0.2 0.79 9.4 0.0 2.5 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) Mg_chelatase PF01078.16 gi|452206983|ref|YP_007487105.1| - 0.059 12.5 0.0 0.11 11.6 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_30 PF13604.1 gi|452206983|ref|YP_007487105.1| - 0.063 12.8 0.4 0.27 10.8 0.3 2.0 1 1 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|452206983|ref|YP_007487105.1| - 0.081 12.6 0.1 0.2 11.3 0.1 1.7 1 0 0 1 1 1 0 Part of AAA domain AAA_25 PF13481.1 gi|452206983|ref|YP_007487105.1| - 0.11 11.8 1.2 1.2 8.5 0.6 2.6 2 1 0 2 2 2 0 AAA domain ABC_ATPase PF09818.4 gi|452206983|ref|YP_007487105.1| - 0.13 10.8 0.1 0.23 10.0 0.1 1.3 1 0 0 1 1 1 0 Predicted ATPase of the ABC class DUF87 PF01935.12 gi|452206983|ref|YP_007487105.1| - 0.14 11.9 0.0 0.29 10.9 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function DUF87 AAA_14 PF13173.1 gi|452206983|ref|YP_007487105.1| - 0.16 11.8 0.0 0.41 10.5 0.0 1.8 2 1 0 2 2 1 0 AAA domain DUF2107 PF09880.4 gi|452206983|ref|YP_007487105.1| - 0.27 11.1 2.5 2.4 8.1 0.2 2.6 2 0 0 2 2 2 0 Predicted membrane protein (DUF2107) DUF4131 PF13567.1 gi|452206983|ref|YP_007487105.1| - 1.4 8.3 6.8 1.3 8.4 0.2 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4131) RimK PF08443.6 gi|452206984|ref|YP_007487106.1| - 6.5e-21 74.6 0.0 8.9e-21 74.2 0.0 1.1 1 0 0 1 1 1 1 RimK-like ATP-grasp domain ATP-grasp_4 PF13535.1 gi|452206984|ref|YP_007487106.1| - 2.1e-12 47.1 0.1 3.1e-12 46.6 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_3 PF02655.9 gi|452206984|ref|YP_007487106.1| - 2e-06 27.7 0.0 4.8e-06 26.5 0.0 1.6 1 1 0 1 1 1 1 ATP-grasp domain GSH-S_ATP PF02955.11 gi|452206984|ref|YP_007487106.1| - 3.1e-06 26.4 0.0 4.6e-06 25.8 0.0 1.2 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|452206984|ref|YP_007487106.1| - 0.00015 20.6 0.0 0.0006 18.6 0.0 1.9 1 1 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon Dala_Dala_lig_C PF07478.8 gi|452206984|ref|YP_007487106.1| - 0.00083 18.7 0.0 0.0086 15.4 0.0 2.0 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus PPDK_N PF01326.14 gi|452206984|ref|YP_007487106.1| - 0.0055 15.7 0.0 0.11 11.5 0.0 2.2 1 1 1 2 2 2 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain ATPgrasp_ST PF14397.1 gi|452206984|ref|YP_007487106.1| - 0.0067 15.5 0.0 0.052 12.6 0.0 2.1 2 1 0 2 2 2 1 Sugar-transfer associated ATP-grasp PepSY PF03413.14 gi|452206986|ref|YP_007487108.1| - 1.6e-11 44.6 1.3 1.6e-11 44.6 0.9 1.9 2 0 0 2 2 2 1 Peptidase propeptide and YPEB domain PepSY_2 PF13670.1 gi|452206986|ref|YP_007487108.1| - 3e-05 23.8 5.3 9.1e-05 22.2 3.7 1.7 1 1 0 1 1 1 1 Peptidase propeptide and YPEB domain DUF2874 PF11396.3 gi|452206986|ref|YP_007487108.1| - 0.0037 17.2 0.3 0.0055 16.6 0.2 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF2874) Robl_LC7 PF03259.12 gi|452206986|ref|YP_007487108.1| - 0.0053 16.2 0.2 0.0094 15.4 0.2 1.4 1 0 0 1 1 1 1 Roadblock/LC7 domain NAD_binding_10 PF13460.1 gi|452206987|ref|YP_007487109.1| - 1.2e-23 84.0 0.0 2.3e-23 83.1 0.0 1.4 1 0 0 1 1 1 1 NADH(P)-binding NmrA PF05368.8 gi|452206987|ref|YP_007487109.1| - 9.9e-12 44.6 0.0 1.3e-11 44.1 0.0 1.2 1 0 0 1 1 1 1 NmrA-like family Epimerase PF01370.16 gi|452206987|ref|YP_007487109.1| - 3.2e-11 43.1 0.0 1.4e-10 41.0 0.0 2.0 2 1 0 3 3 3 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|452206987|ref|YP_007487109.1| - 2.1e-06 26.8 0.0 0.00025 20.0 0.0 2.1 2 0 0 2 2 2 2 RmlD substrate binding domain 3Beta_HSD PF01073.14 gi|452206987|ref|YP_007487109.1| - 2.7e-05 23.0 0.0 4.5e-05 22.2 0.0 1.4 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family adh_short PF00106.20 gi|452206987|ref|YP_007487109.1| - 0.0017 18.3 0.0 0.0065 16.4 0.0 2.1 1 1 0 1 1 1 1 short chain dehydrogenase Semialdhyde_dh PF01118.19 gi|452206987|ref|YP_007487109.1| - 0.0034 17.6 0.0 0.01 16.1 0.0 1.9 2 0 0 2 2 2 1 Semialdehyde dehydrogenase, NAD binding domain NAD_binding_4 PF07993.7 gi|452206987|ref|YP_007487109.1| - 0.017 14.0 0.2 0.092 11.6 0.0 2.3 3 1 0 3 3 3 0 Male sterility protein DapB_N PF01113.15 gi|452206987|ref|YP_007487109.1| - 0.063 13.1 0.0 0.12 12.2 0.0 1.5 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus Glyco_trans_4_4 PF13579.1 gi|452206987|ref|YP_007487109.1| - 0.13 12.4 2.8 0.23 11.5 0.5 2.4 1 1 1 2 2 2 0 Glycosyl transferase 4-like domain HATPase_c PF02518.21 gi|452206988|ref|YP_007487110.1| - 9.6e-22 76.8 0.0 1.5e-21 76.2 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.1 gi|452206988|ref|YP_007487110.1| - 2.4e-09 37.0 0.0 4.5e-09 36.1 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.1 gi|452206988|ref|YP_007487110.1| - 0.0094 15.6 0.0 0.028 14.1 0.0 1.6 2 0 0 2 2 2 1 GHKL domain HATPase_c_3 PF13589.1 gi|452206988|ref|YP_007487110.1| - 0.074 12.7 0.0 0.12 12.0 0.0 1.3 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF4383 PF14325.1 gi|452206988|ref|YP_007487110.1| - 1.4 8.8 9.5 14 5.7 6.6 2.1 1 1 0 1 1 1 0 Domain of unknown function (DUF4383) DUF4149 PF13664.1 gi|452206988|ref|YP_007487110.1| - 2.3 8.3 4.7 3.3 7.8 2.9 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4149) DUF418 PF04235.7 gi|452206989|ref|YP_007487111.1| - 3.8e-46 156.7 10.5 3.8e-46 156.7 7.3 2.3 2 1 0 2 2 2 1 Protein of unknown function (DUF418) TrkA_N PF02254.13 gi|452206990|ref|YP_007487112.1| - 2.5e-21 75.8 0.6 3.6e-21 75.3 0.1 1.5 2 0 0 2 2 1 1 TrkA-N domain TrkA_C PF02080.16 gi|452206990|ref|YP_007487112.1| - 6.2e-07 28.9 0.9 1e-06 28.1 0.2 1.7 2 0 0 2 2 2 1 TrkA-C domain Pyr_redox_2 PF07992.9 gi|452206990|ref|YP_007487112.1| - 3.7e-05 23.7 0.5 4.3e-05 23.4 0.4 1.4 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase UDPG_MGDP_dh_N PF03721.9 gi|452206990|ref|YP_007487112.1| - 5.2e-05 22.7 0.2 0.00011 21.5 0.0 1.7 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_7 PF13241.1 gi|452206990|ref|YP_007487112.1| - 6.6e-05 23.1 0.5 0.00027 21.1 0.0 2.0 2 0 0 2 2 2 1 Putative NAD(P)-binding DAO PF01266.19 gi|452206990|ref|YP_007487112.1| - 0.00011 21.1 0.2 0.00025 20.0 0.0 1.4 1 1 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|452206990|ref|YP_007487112.1| - 0.00036 19.7 0.1 0.00063 18.8 0.0 1.4 1 1 0 1 1 1 1 FAD binding domain NAD_binding_8 PF13450.1 gi|452206990|ref|YP_007487112.1| - 0.00045 20.1 0.0 0.0026 17.7 0.0 2.2 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.22 gi|452206990|ref|YP_007487112.1| - 0.00084 19.7 0.4 0.0047 17.2 0.0 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase F420_oxidored PF03807.12 gi|452206990|ref|YP_007487112.1| - 0.0044 17.4 0.0 0.012 16.0 0.0 1.7 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent CPSase_L_chain PF00289.17 gi|452206990|ref|YP_007487112.1| - 0.0048 16.9 0.0 0.013 15.5 0.0 1.7 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, N-terminal domain GIDA PF01134.17 gi|452206990|ref|YP_007487112.1| - 0.0057 15.5 0.0 0.0084 15.0 0.0 1.2 1 0 0 1 1 1 1 Glucose inhibited division protein A AlaDh_PNT_C PF01262.16 gi|452206990|ref|YP_007487112.1| - 0.0077 15.8 0.0 0.015 14.9 0.0 1.4 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox_3 PF13738.1 gi|452206990|ref|YP_007487112.1| - 0.012 15.6 0.0 0.031 14.3 0.0 1.6 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|452206990|ref|YP_007487112.1| - 0.013 14.5 0.0 0.028 13.5 0.0 1.4 1 0 0 1 1 1 0 Thi4 family NAD_binding_10 PF13460.1 gi|452206990|ref|YP_007487112.1| - 0.016 15.2 0.2 0.023 14.7 0.1 1.5 1 1 0 1 1 1 0 NADH(P)-binding B12-binding PF02310.14 gi|452206990|ref|YP_007487112.1| - 0.036 13.9 0.2 0.18 11.6 0.0 2.2 2 0 0 2 2 2 0 B12 binding domain RrnaAD PF00398.15 gi|452206990|ref|YP_007487112.1| - 0.12 11.3 0.0 0.41 9.6 0.0 1.6 1 1 1 2 2 2 0 Ribosomal RNA adenine dimethylase AA_permease_2 PF13520.1 gi|452206991|ref|YP_007487113.1| - 6.8e-52 176.4 46.5 8.4e-52 176.1 32.2 1.0 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|452206991|ref|YP_007487113.1| - 1.4e-45 155.5 44.0 1.8e-45 155.1 30.5 1.1 1 0 0 1 1 1 1 Amino acid permease Spore_permease PF03845.8 gi|452206991|ref|YP_007487113.1| - 2e-09 36.5 9.0 2e-09 36.5 6.2 2.5 1 1 0 1 1 1 1 Spore germination protein Trp_Tyr_perm PF03222.8 gi|452206991|ref|YP_007487113.1| - 7.9 5.1 33.0 1.9 7.2 16.3 3.0 1 1 1 2 2 2 0 Tryptophan/tyrosine permease family FxsA PF04186.8 gi|452206992|ref|YP_007487114.1| - 1.7e-29 101.9 5.5 2.5e-29 101.3 3.8 1.2 1 0 0 1 1 1 1 FxsA cytoplasmic membrane protein DUF1469 PF07332.6 gi|452206992|ref|YP_007487114.1| - 0.045 13.4 9.0 2.9 7.6 4.3 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1469) iPGM_N PF06415.8 gi|452206993|ref|YP_007487115.1| - 1.4e-71 240.4 0.0 1.8e-71 240.0 0.0 1.1 1 0 0 1 1 1 1 BPG-independent PGAM N-terminus (iPGM_N) Metalloenzyme PF01676.13 gi|452206993|ref|YP_007487115.1| - 6e-68 228.9 0.1 7.9e-68 228.5 0.0 1.1 1 0 0 1 1 1 1 Metalloenzyme superfamily Phosphodiest PF01663.17 gi|452206993|ref|YP_007487115.1| - 0.00011 21.6 0.1 0.00019 20.8 0.1 1.4 1 0 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase PglZ PF08665.7 gi|452206993|ref|YP_007487115.1| - 0.16 11.6 0.2 0.34 10.5 0.1 1.5 1 0 0 1 1 1 0 PglZ domain Abhydrolase_5 PF12695.2 gi|452206994|ref|YP_007487116.1| - 1.6e-14 53.8 0.9 2.7e-14 53.1 0.6 1.3 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_6 PF12697.2 gi|452206994|ref|YP_007487116.1| - 1.2e-10 41.6 11.0 1.5e-05 24.9 2.9 2.1 1 1 1 2 2 2 2 Alpha/beta hydrolase family DLH PF01738.13 gi|452206994|ref|YP_007487116.1| - 8.3e-08 31.7 0.4 1.1e-07 31.3 0.3 1.2 1 0 0 1 1 1 1 Dienelactone hydrolase family Abhydrolase_3 PF07859.8 gi|452206994|ref|YP_007487116.1| - 2e-06 27.5 4.0 3.1e-05 23.6 0.7 2.2 1 1 1 2 2 2 1 alpha/beta hydrolase fold Peptidase_S15 PF02129.13 gi|452206994|ref|YP_007487116.1| - 3.6e-05 23.3 0.3 4.6e-05 22.9 0.2 1.1 1 0 0 1 1 1 1 X-Pro dipeptidyl-peptidase (S15 family) Abhydrolase_1 PF00561.15 gi|452206994|ref|YP_007487116.1| - 3.6e-05 23.4 0.1 0.076 12.5 0.1 2.2 1 1 1 2 2 2 2 alpha/beta hydrolase fold Thioesterase PF00975.15 gi|452206994|ref|YP_007487116.1| - 0.00032 21.0 0.9 0.0006 20.0 0.6 1.5 1 1 0 1 1 1 1 Thioesterase domain FSH1 PF03959.8 gi|452206994|ref|YP_007487116.1| - 0.00038 19.9 0.0 0.00046 19.6 0.0 1.1 1 0 0 1 1 1 1 Serine hydrolase (FSH1) Abhydrolase_2 PF02230.11 gi|452206994|ref|YP_007487116.1| - 0.0017 17.8 0.0 0.0023 17.4 0.0 1.1 1 0 0 1 1 1 1 Phospholipase/Carboxylesterase Peptidase_S9 PF00326.16 gi|452206994|ref|YP_007487116.1| - 0.011 14.9 0.4 0.056 12.6 0.1 1.9 1 1 1 2 2 2 0 Prolyl oligopeptidase family BAAT_C PF08840.6 gi|452206994|ref|YP_007487116.1| - 0.04 13.6 0.1 0.56 9.8 0.0 2.0 1 1 1 2 2 2 0 BAAT / Acyl-CoA thioester hydrolase C terminal AXE1 PF05448.7 gi|452206994|ref|YP_007487116.1| - 0.045 12.2 0.9 0.21 10.0 0.1 2.0 1 1 1 2 2 2 0 Acetyl xylan esterase (AXE1) N6_N4_Mtase PF01555.13 gi|452206995|ref|YP_007487117.1| - 4.9e-39 134.1 0.0 7e-39 133.6 0.0 1.2 1 0 0 1 1 1 1 DNA methylase Methyltransf_26 PF13659.1 gi|452206995|ref|YP_007487117.1| - 7.3e-10 38.9 0.0 5.6e-05 23.1 0.0 2.3 2 0 0 2 2 2 2 Methyltransferase domain UPF0020 PF01170.13 gi|452206995|ref|YP_007487117.1| - 0.0006 19.4 0.0 0.55 9.7 0.0 2.3 2 0 0 2 2 2 2 Putative RNA methylase family UPF0020 Methyltransf_11 PF08241.7 gi|452206995|ref|YP_007487117.1| - 0.032 14.7 0.0 1.5 9.3 0.0 2.8 3 0 0 3 3 3 0 Methyltransferase domain Met_10 PF02475.11 gi|452206995|ref|YP_007487117.1| - 0.092 12.3 0.0 13 5.2 0.0 2.2 2 0 0 2 2 2 0 Met-10+ like-protein ECH PF00378.15 gi|452206997|ref|YP_007487119.1| - 2.4e-43 148.0 0.1 3e-43 147.7 0.1 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family NAD_synthase PF02540.12 gi|452206998|ref|YP_007487120.1| - 1.3e-81 273.0 0.0 1.7e-81 272.7 0.0 1.0 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.11 gi|452206998|ref|YP_007487120.1| - 2.7e-06 26.1 0.0 0.00012 20.7 0.0 2.2 1 1 1 2 2 2 2 tRNA methyl transferase QueC PF06508.8 gi|452206998|ref|YP_007487120.1| - 0.00047 19.4 0.0 0.0027 17.0 0.0 2.0 1 1 1 2 2 2 1 Queuosine biosynthesis protein QueC Asn_synthase PF00733.16 gi|452206998|ref|YP_007487120.1| - 0.00096 18.7 0.1 0.0017 17.8 0.0 1.4 1 1 0 1 1 1 1 Asparagine synthase TrmB PF01978.14 gi|452206998|ref|YP_007487120.1| - 0.082 12.6 0.1 7.2 6.3 0.0 3.1 3 0 0 3 3 3 0 Sugar-specific transcriptional regulator TrmB 2-Hacid_dh_C PF02826.14 gi|452206999|ref|YP_007487121.1| - 7e-52 175.1 0.0 9.6e-52 174.6 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|452206999|ref|YP_007487121.1| - 6.3e-25 87.1 0.0 1.1e-24 86.3 0.0 1.4 1 1 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain UDPG_MGDP_dh_C PF03720.10 gi|452206999|ref|YP_007487121.1| - 0.069 13.3 0.1 0.78 9.9 0.0 2.5 3 0 0 3 3 3 0 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain UPF0047 PF01894.12 gi|452207000|ref|YP_007487122.1| - 4.9e-32 110.2 0.0 5.7e-32 110.0 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 SidE PF12252.3 gi|452207000|ref|YP_007487122.1| - 0.0044 14.4 0.0 0.0054 14.1 0.0 1.0 1 0 0 1 1 1 1 Dot/Icm substrate protein RibD_C PF01872.12 gi|452207001|ref|YP_007487123.1| - 3.1e-45 154.2 0.0 3.5e-45 154.0 0.0 1.0 1 0 0 1 1 1 1 RibD C-terminal domain SpoU_methylase PF00588.14 gi|452207002|ref|YP_007487124.1| - 8.2e-27 93.8 0.0 1.1e-26 93.4 0.0 1.2 1 0 0 1 1 1 1 SpoU rRNA Methylase family DUF2236 PF09995.4 gi|452207002|ref|YP_007487124.1| - 0.021 14.1 0.0 0.035 13.4 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2236) Methyltrn_RNA_4 PF09936.4 gi|452207002|ref|YP_007487124.1| - 0.023 14.1 0.0 5.3 6.4 0.0 2.1 2 0 0 2 2 2 0 SAM-dependent RNA methyltransferase DUF2065 PF09838.4 gi|452207003|ref|YP_007487125.1| - 0.034 13.8 0.1 0.59 9.8 0.0 2.1 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2065) Abhydrolase_6 PF12697.2 gi|452207004|ref|YP_007487126.1| - 9e-32 110.7 5.2 1.1e-31 110.4 3.6 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|452207004|ref|YP_007487126.1| - 3.1e-15 56.3 0.1 6.8e-15 55.2 0.1 1.5 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_5 PF12695.2 gi|452207004|ref|YP_007487126.1| - 2.7e-14 53.1 0.0 7.1e-14 51.7 0.0 1.7 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_3 PF07859.8 gi|452207004|ref|YP_007487126.1| - 0.0016 18.0 1.2 0.025 14.1 0.8 2.7 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_4 PF08386.5 gi|452207004|ref|YP_007487126.1| - 0.0032 17.3 0.0 0.008 16.0 0.0 1.7 1 0 0 1 1 1 1 TAP-like protein DUF1806 PF08830.5 gi|452207004|ref|YP_007487126.1| - 0.091 12.5 0.0 0.29 10.9 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1806) Pterin_bind PF00809.17 gi|452207005|ref|YP_007487127.1| - 2.9e-28 98.7 0.0 4.7e-28 98.0 0.0 1.3 1 0 0 1 1 1 1 Pterin binding enzyme MAF_flag10 PF01973.13 gi|452207006|ref|YP_007487128.1| - 1.3e-23 83.4 0.0 1.6e-23 83.0 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF115 Methyltransf_11 PF08241.7 gi|452207007|ref|YP_007487129.1| - 2.2e-16 60.1 0.0 3e-16 59.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|452207007|ref|YP_007487129.1| - 1.5e-08 34.5 0.0 1.9e-08 34.1 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|452207007|ref|YP_007487129.1| - 5.4e-08 33.1 0.0 7.9e-08 32.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|452207007|ref|YP_007487129.1| - 1.1e-07 31.4 0.0 1.5e-07 31.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|452207007|ref|YP_007487129.1| - 5.3e-07 28.9 0.0 7.2e-07 28.5 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_18 PF12847.2 gi|452207007|ref|YP_007487129.1| - 1.8e-06 28.4 0.0 2.8e-06 27.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|452207007|ref|YP_007487129.1| - 4.6e-06 26.6 0.2 8.2e-06 25.8 0.2 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|452207007|ref|YP_007487129.1| - 0.00022 21.6 0.0 0.00034 21.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|452207007|ref|YP_007487129.1| - 0.0058 16.0 0.0 0.02 14.2 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase small domain FtsJ PF01728.14 gi|452207007|ref|YP_007487129.1| - 0.0097 15.9 0.0 0.015 15.2 0.0 1.4 1 1 0 1 1 1 1 FtsJ-like methyltransferase ADH_zinc_N PF00107.21 gi|452207007|ref|YP_007487129.1| - 0.037 13.5 0.1 0.093 12.2 0.1 1.8 1 1 0 1 1 1 0 Zinc-binding dehydrogenase RrnaAD PF00398.15 gi|452207007|ref|YP_007487129.1| - 0.11 11.5 0.0 0.14 11.1 0.0 1.1 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase TrkA_N PF02254.13 gi|452207008|ref|YP_007487130.1| - 7.4e-24 83.9 1.3 9.9e-24 83.5 0.9 1.2 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.16 gi|452207008|ref|YP_007487130.1| - 8.1e-15 54.1 0.3 1.4e-14 53.4 0.2 1.4 1 0 0 1 1 1 1 TrkA-C domain FAD_binding_3 PF01494.14 gi|452207008|ref|YP_007487130.1| - 0.0002 20.5 0.1 0.00023 20.3 0.1 1.2 1 0 0 1 1 1 1 FAD binding domain NAD_binding_7 PF13241.1 gi|452207008|ref|YP_007487130.1| - 0.00048 20.3 0.2 0.0007 19.8 0.1 1.3 1 0 0 1 1 1 1 Putative NAD(P)-binding UDPG_MGDP_dh_N PF03721.9 gi|452207008|ref|YP_007487130.1| - 0.001 18.4 0.1 0.0025 17.2 0.1 1.6 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_10 PF13460.1 gi|452207008|ref|YP_007487130.1| - 0.0027 17.7 0.8 0.0043 17.0 0.2 1.7 2 0 0 2 2 2 1 NADH(P)-binding XdhC_C PF13478.1 gi|452207008|ref|YP_007487130.1| - 0.0028 17.9 0.3 0.0051 17.1 0.1 1.5 2 0 0 2 2 1 1 XdhC Rossmann domain 3HCDH_N PF02737.13 gi|452207008|ref|YP_007487130.1| - 0.0043 16.7 0.7 0.0063 16.1 0.4 1.4 1 1 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|452207008|ref|YP_007487130.1| - 0.0053 15.9 0.2 0.016 14.3 0.2 1.7 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.16 gi|452207008|ref|YP_007487130.1| - 0.0075 15.8 0.4 0.011 15.2 0.3 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain IlvN PF07991.7 gi|452207008|ref|YP_007487130.1| - 0.024 14.0 0.1 0.038 13.3 0.1 1.3 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain DAO PF01266.19 gi|452207008|ref|YP_007487130.1| - 0.024 13.5 0.9 0.032 13.1 0.2 1.6 2 0 0 2 2 2 0 FAD dependent oxidoreductase Saccharop_dh PF03435.13 gi|452207008|ref|YP_007487130.1| - 0.032 13.2 0.1 0.036 13.0 0.1 1.1 1 0 0 1 1 1 0 Saccharopine dehydrogenase NmrA PF05368.8 gi|452207008|ref|YP_007487130.1| - 0.04 13.1 0.4 0.094 11.9 0.3 1.6 1 1 0 1 1 1 0 NmrA-like family F420_oxidored PF03807.12 gi|452207008|ref|YP_007487130.1| - 0.046 14.1 0.1 0.13 12.7 0.0 1.7 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent AdoHcyase_NAD PF00670.16 gi|452207008|ref|YP_007487130.1| - 0.067 13.0 0.3 0.093 12.5 0.2 1.3 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain NAD_binding_2 PF03446.10 gi|452207008|ref|YP_007487130.1| - 0.068 13.0 0.2 0.11 12.2 0.0 1.6 2 0 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase GFO_IDH_MocA PF01408.17 gi|452207008|ref|YP_007487130.1| - 0.13 12.7 0.1 0.19 12.2 0.1 1.3 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold Asn_synthase PF00733.16 gi|452207009|ref|YP_007487131.1| - 0.017 14.6 0.2 0.027 13.9 0.1 1.4 2 0 0 2 2 2 0 Asparagine synthase dsDNA_bind PF01984.15 gi|452207010|ref|YP_007487132.1| - 1.4e-28 99.0 13.4 1.6e-28 98.7 9.3 1.0 1 0 0 1 1 1 1 Double-stranded DNA-binding domain PCI PF01399.22 gi|452207010|ref|YP_007487132.1| - 0.044 14.1 0.1 0.069 13.4 0.1 1.6 1 1 0 1 1 1 0 PCI domain Caps_synth_GfcC PF06251.6 gi|452207010|ref|YP_007487132.1| - 0.62 9.1 3.8 0.72 8.9 2.6 1.1 1 0 0 1 1 1 0 Capsule biosynthesis GfcC Hid1 PF12722.2 gi|452207010|ref|YP_007487132.1| - 2.9 5.4 5.2 3.4 5.2 3.6 1.0 1 0 0 1 1 1 0 High-temperature-induced dauer-formation protein 2-Hacid_dh_C PF02826.14 gi|452207011|ref|YP_007487133.1| - 1e-49 168.1 0.0 1.5e-49 167.5 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|452207011|ref|YP_007487133.1| - 6.9e-16 57.9 0.0 8.4e-16 57.6 0.0 1.0 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain F420_oxidored PF03807.12 gi|452207011|ref|YP_007487133.1| - 0.0013 19.0 0.1 0.0034 17.7 0.0 1.8 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.10 gi|452207011|ref|YP_007487133.1| - 0.002 17.9 0.0 0.0033 17.2 0.0 1.3 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 2-oxoacid_dh PF00198.18 gi|452207011|ref|YP_007487133.1| - 0.035 13.3 0.0 0.05 12.8 0.0 1.2 1 0 0 1 1 1 0 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ThiF PF00899.16 gi|452207011|ref|YP_007487133.1| - 0.062 13.1 0.4 0.39 10.5 0.6 2.0 2 0 0 2 2 2 0 ThiF family 3HCDH_N PF02737.13 gi|452207011|ref|YP_007487133.1| - 0.12 12.0 0.0 0.23 11.1 0.0 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Usp PF00582.21 gi|452207012|ref|YP_007487134.1| - 1.9e-09 37.8 6.5 3.9e-09 36.8 4.5 1.5 1 1 0 1 1 1 1 Universal stress protein family DUF3203 PF11462.3 gi|452207012|ref|YP_007487134.1| - 0.02 14.7 0.5 0.042 13.7 0.3 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3203) PIG-L PF02585.12 gi|452207012|ref|YP_007487134.1| - 0.024 15.1 0.2 0.097 13.1 0.1 1.8 2 0 0 2 2 2 0 GlcNAc-PI de-N-acetylase DUF2478 PF10649.4 gi|452207012|ref|YP_007487134.1| - 0.11 11.8 0.3 0.17 11.1 0.1 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF2478) CoA_binding PF02629.14 gi|452207012|ref|YP_007487134.1| - 0.27 11.7 2.1 0.49 10.9 0.1 2.2 3 0 0 3 3 3 0 CoA binding domain MFS_1 PF07690.11 gi|452207013|ref|YP_007487135.1| - 6.2e-34 117.2 52.3 1.3e-20 73.4 18.6 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.2 gi|452207013|ref|YP_007487135.1| - 0.16 11.8 0.0 0.16 11.8 0.0 3.3 4 1 0 4 4 4 0 MFS_1 like family Histidinol_dh PF00815.15 gi|452207014|ref|YP_007487136.1| - 4.2e-144 480.2 4.7 5e-144 479.9 3.2 1.0 1 0 0 1 1 1 1 Histidinol dehydrogenase Toprim_2 PF13155.1 gi|452207014|ref|YP_007487136.1| - 0.095 13.0 0.1 0.25 11.6 0.1 1.7 1 0 0 1 1 1 0 Toprim-like Fe_dep_repr_C PF02742.10 gi|452207015|ref|YP_007487137.1| - 1.9e-29 101.1 0.6 3.4e-29 100.3 0.4 1.5 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain Fe_dep_repress PF01325.14 gi|452207015|ref|YP_007487137.1| - 7.8e-18 64.1 0.4 3.1e-17 62.2 0.2 2.1 2 1 1 3 3 1 1 Iron dependent repressor, N-terminal DNA binding domain FeoA PF04023.9 gi|452207015|ref|YP_007487137.1| - 1.3e-12 47.5 0.8 2.5e-12 46.5 0.2 1.8 2 0 0 2 2 1 1 FeoA domain HTH_27 PF13463.1 gi|452207015|ref|YP_007487137.1| - 6.4e-08 32.8 0.3 2.7e-07 30.7 0.2 2.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|452207015|ref|YP_007487137.1| - 3.7e-07 29.7 0.1 2.9e-06 26.8 0.0 2.4 2 0 0 2 2 2 1 MarR family MarR PF01047.17 gi|452207015|ref|YP_007487137.1| - 6.3e-07 28.9 0.0 2.8e-06 26.9 0.0 2.0 2 0 0 2 2 2 1 MarR family HTH_IclR PF09339.5 gi|452207015|ref|YP_007487137.1| - 2.1e-05 23.9 0.9 8.3e-05 22.0 0.0 2.5 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|452207015|ref|YP_007487137.1| - 2.2e-05 23.7 0.0 4.2e-05 22.8 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.1 gi|452207015|ref|YP_007487137.1| - 4e-05 23.3 0.0 9.4e-05 22.1 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_20 PF12840.2 gi|452207015|ref|YP_007487137.1| - 5.7e-05 22.8 0.3 0.00041 20.0 0.0 2.5 3 0 0 3 3 3 1 Helix-turn-helix domain TrmB PF01978.14 gi|452207015|ref|YP_007487137.1| - 0.00027 20.5 0.1 0.00064 19.3 0.0 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB GntR PF00392.16 gi|452207015|ref|YP_007487137.1| - 0.00058 19.2 1.9 0.0015 17.9 0.1 2.6 3 1 0 3 3 3 1 Bacterial regulatory proteins, gntR family HTH_5 PF01022.15 gi|452207015|ref|YP_007487137.1| - 0.00067 19.2 0.0 0.0015 18.1 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_1 PF00126.22 gi|452207015|ref|YP_007487137.1| - 0.0012 18.5 0.1 0.015 15.0 0.0 2.6 2 1 0 2 2 2 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_12 PF08461.5 gi|452207015|ref|YP_007487137.1| - 0.0013 18.3 0.5 0.0057 16.3 0.0 2.3 2 0 0 2 2 2 1 Ribonuclease R winged-helix domain Rrf2 PF02082.15 gi|452207015|ref|YP_007487137.1| - 0.0016 18.5 0.1 0.0043 17.1 0.0 1.8 2 0 0 2 2 1 1 Transcriptional regulator Crp PF00325.15 gi|452207015|ref|YP_007487137.1| - 0.0058 16.0 0.1 0.013 14.9 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory proteins, crp family FeoC PF09012.5 gi|452207015|ref|YP_007487137.1| - 0.01 15.5 0.0 0.023 14.4 0.0 1.5 1 1 0 1 1 1 0 FeoC like transcriptional regulator DUF2250 PF10007.4 gi|452207015|ref|YP_007487137.1| - 0.01 15.7 0.1 0.024 14.5 0.0 1.6 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) SHOCT PF09851.4 gi|452207015|ref|YP_007487137.1| - 0.012 15.0 0.2 0.034 13.6 0.2 1.7 1 0 0 1 1 1 0 Short C-terminal domain Phage_rep_O PF04492.8 gi|452207015|ref|YP_007487137.1| - 0.021 15.0 0.0 0.059 13.5 0.0 1.7 2 0 0 2 2 2 0 Bacteriophage replication protein O HxlR PF01638.12 gi|452207015|ref|YP_007487137.1| - 0.033 13.8 0.0 0.058 13.0 0.0 1.4 1 0 0 1 1 1 0 HxlR-like helix-turn-helix HTH_10 PF04967.7 gi|452207015|ref|YP_007487137.1| - 0.041 13.4 0.0 0.092 12.3 0.0 1.5 1 0 0 1 1 1 0 HTH DNA binding domain HTH_23 PF13384.1 gi|452207015|ref|YP_007487137.1| - 0.043 13.4 0.0 0.095 12.3 0.0 1.7 1 0 0 1 1 1 0 Homeodomain-like domain Penicillinase_R PF03965.11 gi|452207015|ref|YP_007487137.1| - 0.048 13.7 0.0 0.09 12.8 0.0 1.5 1 0 0 1 1 1 0 Penicillinase repressor DUF4423 PF14394.1 gi|452207015|ref|YP_007487137.1| - 0.05 13.1 0.0 0.1 12.1 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) LexA_DNA_bind PF01726.11 gi|452207015|ref|YP_007487137.1| - 0.054 13.0 0.0 0.23 11.0 0.0 2.0 2 0 0 2 2 2 0 LexA DNA binding domain PASTA PF03793.14 gi|452207015|ref|YP_007487137.1| - 0.055 13.1 0.3 8 6.2 0.0 2.4 2 0 0 2 2 2 0 PASTA domain HemN_C PF06969.11 gi|452207015|ref|YP_007487137.1| - 0.055 13.5 0.0 0.14 12.2 0.0 1.7 1 0 0 1 1 1 0 HemN C-terminal domain HTH_11 PF08279.7 gi|452207015|ref|YP_007487137.1| - 0.056 13.1 0.0 0.17 11.5 0.0 1.9 1 0 0 1 1 1 0 HTH domain Topoisom_bac PF01131.15 gi|452207015|ref|YP_007487137.1| - 0.064 12.0 0.0 0.084 11.6 0.0 1.1 1 0 0 1 1 1 0 DNA topoisomerase Sigma70_r3 PF04539.11 gi|452207015|ref|YP_007487137.1| - 0.07 13.0 0.3 0.28 11.0 0.0 2.2 2 0 0 2 2 1 0 Sigma-70 region 3 FaeA PF04703.7 gi|452207015|ref|YP_007487137.1| - 0.096 12.8 0.0 0.22 11.6 0.0 1.6 1 0 0 1 1 1 0 FaeA-like protein HTH_45 PF14947.1 gi|452207015|ref|YP_007487137.1| - 0.11 12.3 0.0 0.18 11.6 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix MTH865 PF07747.6 gi|452207016|ref|YP_007487138.1| - 1.5e-20 72.5 0.1 1.8e-20 72.3 0.1 1.0 1 0 0 1 1 1 1 MTH865-like family MSV199 PF10553.4 gi|452207016|ref|YP_007487138.1| - 0.13 12.1 0.0 0.16 11.8 0.0 1.1 1 0 0 1 1 1 0 MSV199 domain DUF2238 PF09997.4 gi|452207018|ref|YP_007487140.1| - 0.00022 20.6 3.1 0.0048 16.2 2.1 2.2 1 1 0 1 1 1 1 Predicted membrane protein (DUF2238) DUF2062 PF09835.4 gi|452207019|ref|YP_007487141.1| - 5.6e-20 71.5 7.1 6.8e-20 71.2 4.9 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2062) TAT_signal PF10518.4 gi|452207020|ref|YP_007487142.1| - 0.48 10.5 8.5 1.3 9.2 5.9 1.8 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence PAS_9 PF13426.1 gi|452207021|ref|YP_007487143.1| - 5.7e-35 119.8 0.0 3.8e-25 88.2 0.0 2.6 2 0 0 2 2 2 2 PAS domain PAS_4 PF08448.5 gi|452207021|ref|YP_007487143.1| - 1.6e-23 82.7 6.3 2e-12 47.0 0.6 3.3 3 0 0 3 3 3 2 PAS fold PAS PF00989.19 gi|452207021|ref|YP_007487143.1| - 4.4e-22 78.0 0.0 6.2e-11 42.0 0.0 2.5 2 0 0 2 2 2 2 PAS fold PAS_8 PF13188.1 gi|452207021|ref|YP_007487143.1| - 2.2e-11 43.1 0.1 5.5e-05 22.8 0.0 3.3 3 0 0 3 3 3 2 PAS domain HATPase_c PF02518.21 gi|452207021|ref|YP_007487143.1| - 2e-10 40.3 0.0 4.1e-10 39.3 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.6 gi|452207021|ref|YP_007487143.1| - 3.2e-09 36.7 0.0 1.1e-06 28.6 0.0 2.8 2 0 0 2 2 2 1 PAS fold HATPase_c_2 PF13581.1 gi|452207021|ref|YP_007487143.1| - 2.4e-05 24.1 1.2 6e-05 22.8 0.0 2.2 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain SPOB_a PF14689.1 gi|452207021|ref|YP_007487143.1| - 0.0065 15.9 0.5 0.052 13.1 0.0 2.5 3 0 0 3 3 3 1 Sensor_kinase_SpoOB-type, alpha-helical domain PAS_10 PF13596.1 gi|452207021|ref|YP_007487143.1| - 0.011 16.0 0.0 0.25 11.6 0.0 2.7 2 1 0 2 2 2 0 PAS domain HisKA PF00512.20 gi|452207021|ref|YP_007487143.1| - 0.023 14.6 3.0 0.078 12.9 0.7 2.9 2 0 0 2 2 2 0 His Kinase A (phospho-acceptor) domain PAS_7 PF12860.2 gi|452207021|ref|YP_007487143.1| - 0.037 14.0 0.0 0.95 9.4 0.0 3.2 2 1 0 2 2 2 0 PAS fold HATPase_c_3 PF13589.1 gi|452207021|ref|YP_007487143.1| - 0.15 11.7 0.0 0.3 10.7 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Lactamase_B PF00753.22 gi|452207022|ref|YP_007487144.1| - 3.9e-26 91.9 9.9 4.7e-26 91.6 6.9 1.1 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|452207022|ref|YP_007487144.1| - 5.9e-05 22.6 0.2 7.8e-05 22.2 0.1 1.4 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|452207022|ref|YP_007487144.1| - 0.009 15.7 0.1 0.013 15.2 0.1 1.5 1 1 0 1 1 1 1 Beta-lactamase superfamily domain MFS_1 PF07690.11 gi|452207023|ref|YP_007487145.1| - 1.2e-31 109.7 49.6 5.3e-28 97.7 24.0 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily OATP PF03137.15 gi|452207023|ref|YP_007487145.1| - 0.018 13.1 0.7 0.045 11.8 0.0 1.9 2 0 0 2 2 2 0 Organic Anion Transporter Polypeptide (OATP) family DUF3606 PF12244.3 gi|452207024|ref|YP_007487146.1| - 0.0006 19.3 0.2 0.00098 18.7 0.2 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF3606) HTH_31 PF13560.1 gi|452207024|ref|YP_007487146.1| - 0.027 14.6 0.9 0.047 13.9 0.7 1.5 1 1 0 1 1 1 0 Helix-turn-helix domain UPF0175 PF03683.8 gi|452207024|ref|YP_007487146.1| - 0.033 13.6 0.0 0.036 13.5 0.0 1.1 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0175) AsnC_trans_reg PF01037.16 gi|452207025|ref|YP_007487147.1| - 2.5e-15 55.9 0.1 4.6e-15 55.0 0.1 1.4 1 0 0 1 1 1 1 AsnC family HTH_24 PF13412.1 gi|452207025|ref|YP_007487147.1| - 2.7e-08 33.0 0.1 2e-07 30.2 0.0 2.1 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|452207025|ref|YP_007487147.1| - 9.3e-08 31.4 0.6 2.4e-06 26.9 0.1 2.2 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|452207025|ref|YP_007487147.1| - 0.00031 20.4 0.0 0.00065 19.4 0.0 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain MarR_2 PF12802.2 gi|452207025|ref|YP_007487147.1| - 0.00053 19.6 0.0 0.0011 18.5 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|452207025|ref|YP_007487147.1| - 0.0034 16.9 0.1 0.0063 16.0 0.1 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_11 PF08279.7 gi|452207025|ref|YP_007487147.1| - 0.0039 16.8 0.0 0.0071 15.9 0.0 1.4 1 0 0 1 1 1 1 HTH domain HTH_5 PF01022.15 gi|452207025|ref|YP_007487147.1| - 0.0056 16.3 0.0 0.0091 15.6 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_27 PF13463.1 gi|452207025|ref|YP_007487147.1| - 0.0081 16.4 1.0 0.016 15.5 0.0 2.0 3 0 0 3 3 2 1 Winged helix DNA-binding domain HTH_Mga PF08280.6 gi|452207025|ref|YP_007487147.1| - 0.012 15.3 0.2 0.026 14.2 0.2 1.5 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain MarR PF01047.17 gi|452207025|ref|YP_007487147.1| - 0.013 15.2 0.0 0.048 13.3 0.0 1.8 2 0 0 2 2 2 0 MarR family Fe_dep_repress PF01325.14 gi|452207025|ref|YP_007487147.1| - 0.013 15.3 0.0 0.024 14.5 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain TrmB PF01978.14 gi|452207025|ref|YP_007487147.1| - 0.018 14.7 0.0 0.037 13.7 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_36 PF13730.1 gi|452207025|ref|YP_007487147.1| - 0.018 15.1 0.0 0.028 14.5 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_23 PF13384.1 gi|452207025|ref|YP_007487147.1| - 0.019 14.5 0.0 0.08 12.6 0.0 2.0 3 0 0 3 3 2 0 Homeodomain-like domain HTH_29 PF13551.1 gi|452207025|ref|YP_007487147.1| - 0.058 13.5 0.0 0.11 12.6 0.0 1.6 1 1 0 1 1 1 0 Winged helix-turn helix GntR PF00392.16 gi|452207025|ref|YP_007487147.1| - 0.097 12.1 0.0 0.19 11.2 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_DeoR PF08220.7 gi|452207025|ref|YP_007487147.1| - 0.12 11.8 0.0 0.22 11.0 0.0 1.3 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain Aminotran_1_2 PF00155.16 gi|452207026|ref|YP_007487148.1| - 3.2e-66 223.7 0.0 3.6e-66 223.5 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|452207026|ref|YP_007487148.1| - 3.6e-07 29.6 0.0 6.2e-07 28.8 0.0 1.4 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.14 gi|452207026|ref|YP_007487148.1| - 3.5e-05 22.7 0.0 0.00019 20.3 0.0 1.8 2 0 0 2 2 2 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.15 gi|452207026|ref|YP_007487148.1| - 0.01 14.1 0.1 0.1 10.8 0.0 2.2 2 1 1 3 3 3 0 Cys/Met metabolism PLP-dependent enzyme DUF382 PF04037.8 gi|452207026|ref|YP_007487148.1| - 0.096 12.5 0.0 0.39 10.5 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF382) OKR_DC_1 PF01276.15 gi|452207026|ref|YP_007487148.1| - 0.11 10.9 0.0 0.17 10.4 0.0 1.2 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, major domain T2SE PF00437.15 gi|452207027|ref|YP_007487149.1| - 9.6e-44 149.3 0.0 1.6e-43 148.5 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.1 gi|452207027|ref|YP_007487149.1| - 4e-05 23.0 0.1 8.6e-05 21.9 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain T2SF PF00482.18 gi|452207028|ref|YP_007487150.1| - 1.4e-25 89.6 18.0 1.1e-14 54.4 0.8 3.3 3 0 0 3 3 3 2 Type II secretion system (T2SS), protein F TadE PF07811.7 gi|452207029|ref|YP_007487151.1| - 0.11 12.3 1.2 0.21 11.4 0.8 1.4 1 0 0 1 1 1 0 TadE-like protein Ecm33 PF12454.3 gi|452207030|ref|YP_007487152.1| - 0.22 11.4 1.7 0.87 9.5 0.6 2.3 2 0 0 2 2 2 0 GPI-anchored cell wall organization protein FAD_oxidored PF12831.2 gi|452207032|ref|YP_007487154.1| - 0.093 11.7 0.0 0.12 11.4 0.0 1.1 1 0 0 1 1 1 0 FAD dependent oxidoreductase DUF1628 PF07790.6 gi|452207033|ref|YP_007487155.1| - 0.0076 16.9 0.1 0.019 15.7 0.1 1.8 1 1 0 1 1 1 1 Protein of unknown function (DUF1628) PIRT PF15099.1 gi|452207034|ref|YP_007487156.1| - 0.035 13.3 0.0 0.069 12.3 0.0 1.4 1 0 0 1 1 1 0 Phosphoinositide-interacting protein family DisA_N PF02457.11 gi|452207034|ref|YP_007487156.1| - 0.057 12.5 0.0 0.12 11.5 0.0 1.5 1 0 0 1 1 1 0 DisA bacterial checkpoint controller nucleotide-binding Tad PF13400.1 gi|452207034|ref|YP_007487156.1| - 0.062 13.3 0.8 0.11 12.5 0.6 1.4 1 0 0 1 1 1 0 Putative Flp pilus-assembly TadE/G-like DUF1628 PF07790.6 gi|452207034|ref|YP_007487156.1| - 0.087 13.5 3.5 0.11 13.2 0.1 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF1628) Prok-RING_1 PF14446.1 gi|452207035|ref|YP_007487157.1| - 0.0043 16.7 1.0 0.0062 16.2 0.7 1.2 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 Phi_1 PF04674.7 gi|452207036|ref|YP_007487158.1| - 0.067 12.3 0.1 0.081 12.0 0.0 1.0 1 0 0 1 1 1 0 Phosphate-induced protein 1 conserved region Usp PF00582.21 gi|452207037|ref|YP_007487159.1| - 5.1e-29 101.2 0.4 5.7e-29 101.1 0.3 1.0 1 0 0 1 1 1 1 Universal stress protein family GTP-bdg_N PF13167.1 gi|452207037|ref|YP_007487159.1| - 0.017 15.2 0.0 0.028 14.5 0.0 1.2 1 0 0 1 1 1 0 GTP-binding GTPase N-terminal Acetyltransf_1 PF00583.19 gi|452207038|ref|YP_007487160.1| - 4.3e-05 23.4 0.0 7.1e-05 22.7 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family FR47 PF08445.5 gi|452207038|ref|YP_007487160.1| - 0.028 14.1 0.0 0.043 13.5 0.0 1.3 1 0 0 1 1 1 0 FR47-like protein Acetyltransf_CG PF14542.1 gi|452207038|ref|YP_007487160.1| - 0.093 12.6 0.0 0.17 11.8 0.0 1.4 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase Methyltransf_11 PF08241.7 gi|452207039|ref|YP_007487161.1| - 2.4e-18 66.4 0.1 5.4e-18 65.2 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|452207039|ref|YP_007487161.1| - 9.9e-15 54.6 0.0 1.5e-14 54.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|452207039|ref|YP_007487161.1| - 5.4e-09 35.8 0.0 1.2e-08 34.7 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|452207039|ref|YP_007487161.1| - 9.8e-09 34.6 0.0 4.1e-08 32.6 0.0 1.9 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.7 gi|452207039|ref|YP_007487161.1| - 1.7e-08 34.8 0.0 3.2e-08 33.9 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|452207039|ref|YP_007487161.1| - 2.3e-08 34.3 0.0 7.8e-08 32.6 0.0 1.9 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|452207039|ref|YP_007487161.1| - 6.5e-08 33.1 0.0 1.4e-07 32.0 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_24 PF13578.1 gi|452207039|ref|YP_007487161.1| - 0.0031 18.3 0.0 0.0042 17.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_8 PF05148.10 gi|452207039|ref|YP_007487161.1| - 0.011 15.3 0.0 0.041 13.5 0.0 1.9 1 1 1 2 2 2 0 Hypothetical methyltransferase NNMT_PNMT_TEMT PF01234.12 gi|452207039|ref|YP_007487161.1| - 0.017 14.1 0.0 0.23 10.3 0.0 2.1 2 0 0 2 2 2 0 NNMT/PNMT/TEMT family Methyltransf_26 PF13659.1 gi|452207039|ref|YP_007487161.1| - 0.15 12.0 3.9 1.8 8.6 2.1 2.6 2 1 0 2 2 2 0 Methyltransferase domain Methyltransf_2 PF00891.13 gi|452207039|ref|YP_007487161.1| - 0.22 10.6 0.8 0.29 10.2 0.5 1.4 1 1 0 1 1 1 0 O-methyltransferase DUF3054 PF11255.3 gi|452207040|ref|YP_007487162.1| - 2.9e-28 97.9 6.9 3.4e-28 97.7 4.8 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3054) HGWP PF03578.10 gi|452207040|ref|YP_007487162.1| - 0.084 12.2 0.2 0.2 10.9 0.1 1.7 1 0 0 1 1 1 0 HGWP repeat MFS_1 PF07690.11 gi|452207041|ref|YP_007487163.1| - 2.1e-31 108.9 49.3 3.1e-19 68.9 13.2 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.1 gi|452207041|ref|YP_007487163.1| - 0.08 11.3 27.3 0.31 9.3 10.7 2.7 2 1 0 2 2 2 0 MFS/sugar transport protein Chorismate_synt PF01264.16 gi|452207042|ref|YP_007487164.1| - 1.7e-118 395.1 0.0 1.9e-118 394.8 0.0 1.0 1 0 0 1 1 1 1 Chorismate synthase IMPDH PF00478.20 gi|452207043|ref|YP_007487165.1| - 1.8e-104 349.3 4.0 3.5e-104 348.4 2.7 1.4 1 1 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain NMO PF03060.10 gi|452207043|ref|YP_007487165.1| - 6.7e-08 32.0 10.4 0.00015 21.0 0.1 2.3 2 0 0 2 2 2 2 Nitronate monooxygenase FMN_dh PF01070.13 gi|452207043|ref|YP_007487165.1| - 1.9e-06 26.9 9.3 7.6e-05 21.7 3.3 2.3 1 1 0 2 2 2 2 FMN-dependent dehydrogenase Glu_synthase PF01645.12 gi|452207043|ref|YP_007487165.1| - 0.0048 15.8 3.5 0.0083 15.0 2.4 1.3 1 0 0 1 1 1 1 Conserved region in glutamate synthase His_biosynth PF00977.16 gi|452207043|ref|YP_007487165.1| - 0.053 12.7 0.1 0.45 9.7 0.0 2.1 2 0 0 2 2 2 0 Histidine biosynthesis protein Aldolase PF01081.14 gi|452207043|ref|YP_007487165.1| - 0.14 11.3 2.0 0.24 10.5 0.2 2.1 2 0 0 2 2 2 0 KDPG and KHG aldolase PcrB PF01884.12 gi|452207043|ref|YP_007487165.1| - 0.43 9.7 2.2 0.37 10.0 0.1 1.9 2 1 0 2 2 2 0 PcrB family DHO_dh PF01180.16 gi|452207043|ref|YP_007487165.1| - 5 5.9 6.7 0.43 9.4 0.3 2.2 2 1 0 2 2 2 0 Dihydroorotate dehydrogenase EPSP_synthase PF00275.15 gi|452207044|ref|YP_007487166.1| - 1.7e-99 333.0 0.2 2.3e-99 332.6 0.1 1.1 1 0 0 1 1 1 1 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Peptidase_M24 PF00557.19 gi|452207045|ref|YP_007487167.1| - 2.7e-41 141.4 1.4 3.8e-41 140.9 0.9 1.2 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.13 gi|452207045|ref|YP_007487167.1| - 1.6e-08 35.0 0.1 1.3e-07 32.1 0.0 2.2 1 1 1 2 2 2 1 Creatinase/Prolidase N-terminal domain PDH PF02153.12 gi|452207046|ref|YP_007487168.1| - 2e-09 36.7 0.4 8.2e-09 34.7 0.3 1.8 1 1 0 1 1 1 1 Prephenate dehydrogenase GFO_IDH_MocA PF01408.17 gi|452207046|ref|YP_007487168.1| - 0.0007 20.1 0.6 0.0023 18.4 0.1 2.1 1 1 1 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold F420_oxidored PF03807.12 gi|452207046|ref|YP_007487168.1| - 0.0019 18.5 0.1 0.0019 18.5 0.1 2.2 3 0 0 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent DUF883 PF05957.8 gi|452207046|ref|YP_007487168.1| - 0.57 10.6 4.4 3.9 7.9 0.4 3.0 2 1 1 3 3 3 0 Bacterial protein of unknown function (DUF883) Methyltransf_23 PF13489.1 gi|452207047|ref|YP_007487169.1| - 1.3e-07 31.4 0.0 6.1e-07 29.3 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|452207047|ref|YP_007487169.1| - 1.9e-05 25.1 0.0 0.0024 18.4 0.0 2.4 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|452207047|ref|YP_007487169.1| - 3.5e-05 24.1 0.0 7.9e-05 23.0 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|452207047|ref|YP_007487169.1| - 0.00073 19.9 0.0 0.003 17.9 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|452207047|ref|YP_007487169.1| - 0.00078 19.0 0.0 0.0061 16.1 0.0 2.1 1 1 0 1 1 1 1 Methyltransferase domain Rsm22 PF09243.5 gi|452207047|ref|YP_007487169.1| - 0.0009 18.3 0.0 0.0013 17.8 0.0 1.2 1 0 0 1 1 1 1 Mitochondrial small ribosomal subunit Rsm22 Methyltransf_25 PF13649.1 gi|452207047|ref|YP_007487169.1| - 0.0037 17.5 0.0 0.0071 16.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|452207047|ref|YP_007487169.1| - 0.02 14.9 0.3 0.41 10.6 0.1 2.5 2 0 0 2 2 2 0 Methyltransferase domain GidB PF02527.10 gi|452207047|ref|YP_007487169.1| - 0.042 12.9 0.0 0.1 11.7 0.0 1.6 1 1 0 1 1 1 0 rRNA small subunit methyltransferase G CobS_N PF12556.3 gi|452207048|ref|YP_007487170.1| - 0.03 13.7 0.0 0.075 12.4 0.0 1.7 1 0 0 1 1 1 0 Cobaltochelatase CobS subunit N terminal Peptidase_M20 PF01546.23 gi|452207048|ref|YP_007487170.1| - 0.042 13.3 0.0 0.042 13.3 0.0 1.2 1 1 0 1 1 1 0 Peptidase family M20/M25/M40 RHH_1 PF01402.16 gi|452207049|ref|YP_007487171.1| - 0.00054 19.7 0.3 0.0016 18.2 0.0 1.8 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family GvpK PF05121.7 gi|452207049|ref|YP_007487171.1| - 0.008 15.9 0.0 0.012 15.3 0.0 1.2 1 0 0 1 1 1 1 Gas vesicle protein K Ribosomal_L15e PF00827.12 gi|452207049|ref|YP_007487171.1| - 0.066 12.7 0.0 0.071 12.6 0.0 1.1 1 0 0 1 1 1 0 Ribosomal L15 Glycos_transf_2 PF00535.21 gi|452207051|ref|YP_007487173.1| - 1.3e-14 54.2 0.0 1.9e-14 53.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|452207051|ref|YP_007487173.1| - 1.8e-10 41.0 0.1 2.6e-10 40.5 0.1 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|452207051|ref|YP_007487173.1| - 0.00077 19.7 0.0 0.0017 18.6 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase family 2 IncA PF04156.9 gi|452207051|ref|YP_007487173.1| - 0.0037 16.9 0.0 0.0047 16.5 0.0 1.1 1 0 0 1 1 1 1 IncA protein UPF0060 PF02694.10 gi|452207051|ref|YP_007487173.1| - 0.017 15.1 1.0 0.035 14.1 0.7 1.5 1 0 0 1 1 1 0 Uncharacterised BCR, YnfA/UPF0060 family DUF478 PF04334.7 gi|452207051|ref|YP_007487173.1| - 0.053 13.3 1.1 0.1 12.4 0.7 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF478) CTP_transf_2 PF01467.21 gi|452207052|ref|YP_007487174.1| - 1.6e-12 47.7 0.0 1.8e-08 34.5 0.0 2.1 2 0 0 2 2 2 2 Cytidylyltransferase FAD_syn PF06574.7 gi|452207052|ref|YP_007487174.1| - 0.003 17.2 0.4 0.0083 15.7 0.1 1.8 2 1 0 2 2 2 1 FAD synthetase TrmB PF01978.14 gi|452207053|ref|YP_007487175.1| - 3.8e-07 29.7 0.1 5.8e-07 29.1 0.1 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|452207053|ref|YP_007487175.1| - 0.00024 20.8 0.0 0.0004 20.1 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|452207053|ref|YP_007487175.1| - 0.00059 19.1 0.0 0.00082 18.7 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding GntR PF00392.16 gi|452207053|ref|YP_007487175.1| - 0.0011 18.3 0.0 0.0022 17.3 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_5 PF01022.15 gi|452207053|ref|YP_007487175.1| - 0.0034 17.0 0.0 0.005 16.4 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TFIIE_alpha PF02002.12 gi|452207053|ref|YP_007487175.1| - 0.005 16.3 0.0 0.0079 15.6 0.0 1.3 1 0 0 1 1 1 1 TFIIE alpha subunit MarR_2 PF12802.2 gi|452207053|ref|YP_007487175.1| - 0.0099 15.5 0.1 0.017 14.7 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|452207053|ref|YP_007487175.1| - 0.011 15.2 0.0 0.018 14.6 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_DeoR PF08220.7 gi|452207053|ref|YP_007487175.1| - 0.023 14.2 0.0 0.036 13.5 0.0 1.3 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_27 PF13463.1 gi|452207053|ref|YP_007487175.1| - 0.027 14.7 0.0 0.05 13.9 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain Fe_dep_repress PF01325.14 gi|452207053|ref|YP_007487175.1| - 0.029 14.3 0.0 0.093 12.6 0.0 1.8 1 1 1 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain FaeA PF04703.7 gi|452207053|ref|YP_007487175.1| - 0.048 13.8 0.0 0.074 13.2 0.0 1.2 1 0 0 1 1 1 0 FaeA-like protein Rrf2 PF02082.15 gi|452207053|ref|YP_007487175.1| - 0.064 13.3 0.0 0.1 12.7 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator MMPL PF03176.10 gi|452207054|ref|YP_007487176.1| - 5.3e-40 137.1 16.2 2.3e-21 75.8 4.3 2.5 2 0 0 2 2 2 2 MMPL family Sterol-sensing PF12349.3 gi|452207054|ref|YP_007487176.1| - 9.2e-12 44.6 9.5 2.1e-08 33.7 1.3 2.4 2 0 0 2 2 2 2 Sterol-sensing domain of SREBP cleavage-activation Patched PF02460.13 gi|452207054|ref|YP_007487176.1| - 4.7e-08 31.4 5.1 4.7e-08 31.4 3.5 2.2 2 0 0 2 2 2 2 Patched family SecD_SecF PF02355.11 gi|452207054|ref|YP_007487176.1| - 0.011 14.8 28.5 0.077 12.1 8.2 2.4 2 0 0 2 2 2 0 Protein export membrane protein CARDB PF07705.6 gi|452207055|ref|YP_007487177.1| - 2.1e-16 59.8 8.0 0.0011 19.0 0.0 4.5 4 1 0 4 4 4 4 CARDB NPCBM_assoc PF10633.4 gi|452207055|ref|YP_007487177.1| - 1.6e-15 56.8 17.7 0.00052 20.0 0.0 6.4 5 2 0 5 5 5 4 NPCBM-associated, NEW3 domain of alpha-galactosidase Transglut_C PF00927.17 gi|452207055|ref|YP_007487177.1| - 1.9e-07 31.0 0.0 0.019 14.9 0.0 3.5 3 0 0 3 3 3 2 Transglutaminase family, C-terminal ig like domain DUF11 PF01345.13 gi|452207055|ref|YP_007487177.1| - 1.6e-05 24.8 15.9 0.00051 20.0 1.3 4.9 5 1 0 5 5 5 2 Domain of unknown function DUF11 TRAP_alpha PF03896.11 gi|452207055|ref|YP_007487177.1| - 0.00041 19.4 0.0 0.24 10.3 0.0 2.6 2 0 0 2 2 2 2 Translocon-associated protein (TRAP), alpha subunit TRAP_beta PF05753.9 gi|452207055|ref|YP_007487177.1| - 0.00048 19.3 2.2 0.48 9.5 0.1 3.3 2 1 1 3 3 3 2 Translocon-associated protein beta (TRAPB) DUF4625 PF15418.1 gi|452207055|ref|YP_007487177.1| - 0.042 13.9 0.1 0.19 11.8 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4625) Arrestin_C PF02752.17 gi|452207055|ref|YP_007487177.1| - 0.059 13.4 0.0 0.93 9.5 0.0 2.7 3 0 0 3 3 3 0 Arrestin (or S-antigen), C-terminal domain DUF2393 PF09624.5 gi|452207055|ref|YP_007487177.1| - 0.1 12.1 0.0 20 4.7 0.0 3.4 4 0 0 4 4 4 0 Protein of unknown function (DUF2393) TetR_N PF00440.18 gi|452207056|ref|YP_007487178.1| - 1.6e-09 37.2 0.1 2.7e-09 36.5 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family GCS2 PF04107.8 gi|452207057|ref|YP_007487179.1| - 1e-76 257.7 0.2 1.2e-76 257.5 0.1 1.1 1 0 0 1 1 1 1 Glutamate-cysteine ligase family 2(GCS2) Amidoligase_2 PF12224.3 gi|452207057|ref|YP_007487179.1| - 0.0021 17.7 0.9 1.9 8.0 0.0 2.4 2 1 0 2 2 2 2 Putative amidoligase enzyme GCS PF03074.11 gi|452207057|ref|YP_007487179.1| - 0.029 13.4 0.0 0.042 12.9 0.0 1.2 1 0 0 1 1 1 0 Glutamate-cysteine ligase FecR PF04773.8 gi|452207057|ref|YP_007487179.1| - 0.13 12.4 0.1 0.45 10.7 0.0 1.9 2 1 0 2 2 2 0 FecR protein Fibrillarin PF01269.12 gi|452207058|ref|YP_007487180.1| - 1.1e-52 178.2 0.0 1.2e-52 178.0 0.0 1.0 1 0 0 1 1 1 1 Fibrillarin Nop PF01798.13 gi|452207059|ref|YP_007487181.1| - 7.9e-41 138.8 0.4 1.3e-40 138.1 0.3 1.3 1 0 0 1 1 1 1 Putative snoRNA binding domain ABM PF03992.11 gi|452207060|ref|YP_007487182.1| - 9.7e-14 51.1 3.1 1.5e-13 50.6 1.7 1.6 1 1 1 2 2 2 2 Antibiotic biosynthesis monooxygenase Acyl-CoA_dh_1 PF00441.19 gi|452207061|ref|YP_007487183.1| - 1.9e-34 118.9 2.9 3.6e-34 118.0 2.0 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|452207061|ref|YP_007487183.1| - 4.9e-23 81.8 0.4 1e-22 80.8 0.3 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.14 gi|452207061|ref|YP_007487183.1| - 1.2e-19 69.5 0.7 2.6e-19 68.4 0.5 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.6 gi|452207061|ref|YP_007487183.1| - 1.1e-08 35.3 6.6 1.1e-08 35.3 4.5 1.9 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain PAS_9 PF13426.1 gi|452207062|ref|YP_007487184.1| - 2.3e-34 117.9 1.2 9.4e-14 51.6 0.0 3.8 4 0 0 4 4 4 3 PAS domain PAS_4 PF08448.5 gi|452207062|ref|YP_007487184.1| - 1.5e-28 98.9 7.2 2.9e-12 46.6 0.0 3.5 3 0 0 3 3 3 3 PAS fold PAS PF00989.19 gi|452207062|ref|YP_007487184.1| - 5.4e-28 97.0 1.0 2e-13 50.0 0.0 3.4 3 0 0 3 3 3 3 PAS fold Response_reg PF00072.19 gi|452207062|ref|YP_007487184.1| - 1.1e-22 80.1 0.0 3.1e-22 78.6 0.0 1.8 2 0 0 2 2 2 1 Response regulator receiver domain PAS_8 PF13188.1 gi|452207062|ref|YP_007487184.1| - 3.4e-20 71.1 2.0 2e-06 27.4 0.0 4.0 4 0 0 4 4 4 3 PAS domain HATPase_c PF02518.21 gi|452207062|ref|YP_007487184.1| - 1.7e-17 63.1 0.2 3.4e-17 62.1 0.1 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.6 gi|452207062|ref|YP_007487184.1| - 2.2e-16 59.6 3.3 5.4e-11 42.4 0.1 4.2 5 0 0 5 5 5 3 PAS fold HisKA PF00512.20 gi|452207062|ref|YP_007487184.1| - 2.3e-08 33.8 4.3 2.3e-08 33.8 0.5 3.1 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain PAS_7 PF12860.2 gi|452207062|ref|YP_007487184.1| - 0.0048 16.8 0.2 0.88 9.5 0.0 4.0 3 1 0 3 3 3 1 PAS fold OKR_DC_1_N PF03709.10 gi|452207062|ref|YP_007487184.1| - 0.0065 16.5 0.0 0.021 14.8 0.0 1.9 1 1 1 2 2 2 1 Orn/Lys/Arg decarboxylase, N-terminal domain HATPase_c PF02518.21 gi|452207063|ref|YP_007487185.1| - 6.1e-11 42.0 0.0 1e-10 41.2 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Response_reg PF00072.19 gi|452207063|ref|YP_007487185.1| - 4.9e-09 36.1 0.0 8.8e-09 35.3 0.0 1.5 1 0 0 1 1 1 1 Response regulator receiver domain HisKA PF00512.20 gi|452207063|ref|YP_007487185.1| - 4.2e-07 29.8 0.2 2.2e-06 27.5 0.0 2.2 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain HATPase_c_2 PF13581.1 gi|452207063|ref|YP_007487185.1| - 0.0041 16.8 0.1 0.011 15.5 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.1 gi|452207063|ref|YP_007487185.1| - 0.008 15.8 0.0 0.015 14.9 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Response_reg PF00072.19 gi|452207064|ref|YP_007487186.1| - 8e-16 58.0 0.0 1.3e-15 57.3 0.0 1.3 1 0 0 1 1 1 1 Response regulator receiver domain CheF-arch PF04283.7 gi|452207064|ref|YP_007487186.1| - 1.3e-10 40.8 0.0 1.9e-10 40.3 0.0 1.1 1 0 0 1 1 1 1 Chemotaxis signal transduction system protein F from archaea OKR_DC_1_N PF03709.10 gi|452207064|ref|YP_007487186.1| - 0.0016 18.4 0.0 0.0025 17.8 0.0 1.3 1 0 0 1 1 1 1 Orn/Lys/Arg decarboxylase, N-terminal domain MCM PF00493.18 gi|452207065|ref|YP_007487187.1| - 9.6e-109 363.1 4.7 8.1e-60 202.3 0.0 4.9 5 0 0 5 5 5 3 MCM2/3/5 family LAGLIDADG_3 PF14528.1 gi|452207065|ref|YP_007487187.1| - 5.1e-59 196.4 0.9 1e-16 60.8 0.0 7.0 6 0 0 6 6 6 6 LAGLIDADG-like domain Intein_splicing PF14890.1 gi|452207065|ref|YP_007487187.1| - 1.2e-41 142.6 0.0 7.7e-11 41.4 0.0 6.4 5 2 0 5 5 5 5 Intein splicing domain MCM_N PF14551.1 gi|452207065|ref|YP_007487187.1| - 1.2e-18 67.7 0.2 8.6e-18 64.9 0.1 2.6 2 0 0 2 2 2 1 MCM N-terminal domain HTH_3 PF01381.17 gi|452207065|ref|YP_007487187.1| - 2.3e-17 62.5 0.1 1.2e-06 28.2 0.0 5.5 6 0 0 6 6 6 2 Helix-turn-helix HTH_31 PF13560.1 gi|452207065|ref|YP_007487187.1| - 8.5e-11 41.8 25.0 0.00038 20.6 0.2 6.8 7 1 1 8 8 6 3 Helix-turn-helix domain Hint PF01079.15 gi|452207065|ref|YP_007487187.1| - 7.1e-10 38.4 0.0 0.0063 15.7 0.0 4.2 3 2 0 3 3 3 3 Hint module HTH_19 PF12844.2 gi|452207065|ref|YP_007487187.1| - 1.3e-09 37.9 0.0 0.017 15.1 0.0 5.1 6 0 0 6 6 6 2 Helix-turn-helix domain PT-HINT PF07591.6 gi|452207065|ref|YP_007487187.1| - 1.1e-05 25.3 1.3 0.93 9.3 0.0 4.9 5 0 0 5 5 5 1 Pretoxin HINT domain Hom_end PF05204.9 gi|452207065|ref|YP_007487187.1| - 0.0038 17.1 1.2 2.8 7.9 0.0 3.8 3 1 1 4 4 4 1 Homing endonuclease HTH_26 PF13443.1 gi|452207065|ref|YP_007487187.1| - 0.18 12.0 0.0 13 6.0 0.0 3.3 3 0 0 3 3 3 0 Cro/C1-type HTH DNA-binding domain Leu_Phe_trans PF03588.9 gi|452207065|ref|YP_007487187.1| - 0.41 9.7 0.0 0.83 8.7 0.0 1.4 1 0 0 1 1 1 0 Leucyl/phenylalanyl-tRNA protein transferase Inhibitor_I53 PF11714.3 gi|452207066|ref|YP_007487188.1| - 0.079 12.9 0.9 0.095 12.6 0.1 1.5 1 1 1 2 2 2 0 Thrombin inhibitor Madanin AAA_19 PF13245.1 gi|452207066|ref|YP_007487188.1| - 0.091 12.5 0.7 0.16 11.7 0.5 1.6 1 1 0 1 1 1 0 Part of AAA domain WXG100 PF06013.7 gi|452207068|ref|YP_007487190.1| - 1.5 8.8 4.5 2.9 7.9 2.2 1.9 2 0 0 2 2 2 0 Proteins of 100 residues with WXG GvpL_GvpF PF06386.6 gi|452207068|ref|YP_007487190.1| - 9.7 5.6 10.7 1.2 8.7 2.1 2.1 1 1 0 2 2 2 0 Gas vesicle synthesis protein GvpL/GvpF UCR_Fe-S_N PF10399.4 gi|452207071|ref|YP_007487193.1| - 0.0017 17.4 0.3 0.0037 16.4 0.2 1.5 1 0 0 1 1 1 1 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal PsbQ PF05757.6 gi|452207071|ref|YP_007487193.1| - 0.029 13.7 0.8 0.048 13.0 0.6 1.3 1 0 0 1 1 1 0 Oxygen evolving enhancer protein 3 (PsbQ) ATP-synt_B PF00430.13 gi|452207071|ref|YP_007487193.1| - 0.62 9.8 5.2 0.083 12.7 0.8 1.5 2 0 0 2 2 2 0 ATP synthase B/B' CF(0) CopD PF05425.8 gi|452207073|ref|YP_007487195.1| - 1.1e-05 25.5 9.6 2e-05 24.7 6.7 1.4 1 0 0 1 1 1 1 Copper resistance protein D DUF2214 PF09980.4 gi|452207073|ref|YP_007487195.1| - 0.00078 19.2 1.6 0.0011 18.7 1.1 1.2 1 0 0 1 1 1 1 Predicted membrane protein (DUF2214) UPF0093 PF03653.8 gi|452207073|ref|YP_007487195.1| - 0.003 17.5 0.2 0.0059 16.5 0.1 1.4 1 1 0 1 1 1 1 Uncharacterised protein family (UPF0093) DUF979 PF06166.7 gi|452207073|ref|YP_007487195.1| - 0.021 13.7 0.1 0.025 13.5 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF979) Cyto_ox_2 PF02322.10 gi|452207073|ref|YP_007487195.1| - 0.022 13.9 3.3 0.026 13.7 2.3 1.0 1 0 0 1 1 1 0 Cytochrome oxidase subunit II DUF4231 PF14015.1 gi|452207073|ref|YP_007487195.1| - 0.042 13.8 0.8 0.042 13.8 0.6 2.1 1 1 0 2 2 2 0 Protein of unknown function (DUF4231) DUF754 PF05449.6 gi|452207073|ref|YP_007487195.1| - 0.24 11.4 3.2 0.41 10.6 0.0 2.3 2 1 1 3 3 3 0 Protein of unknown function (DUF754) TctB PF07331.6 gi|452207073|ref|YP_007487195.1| - 0.3 10.7 9.6 1.7 8.2 0.7 2.1 1 1 1 2 2 2 0 Tripartite tricarboxylate transporter TctB family Cytochrom_B_N PF00033.14 gi|452207073|ref|YP_007487195.1| - 1.5 8.1 8.6 12 5.1 4.3 2.3 1 1 1 2 2 2 0 Cytochrome b(N-terminal)/b6/petB DUF805 PF05656.9 gi|452207073|ref|YP_007487195.1| - 1.8 8.3 6.6 8.2 6.2 3.2 2.3 1 1 0 2 2 2 0 Protein of unknown function (DUF805) Pyr_redox_dim PF02852.17 gi|452207074|ref|YP_007487196.1| - 5.6e-32 110.0 1.2 7.2e-31 106.4 0.1 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox_2 PF07992.9 gi|452207074|ref|YP_007487196.1| - 6.5e-32 111.0 18.2 6.2e-31 107.8 12.6 3.5 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|452207074|ref|YP_007487196.1| - 1.5e-20 73.3 9.0 1.3e-18 67.1 0.3 3.5 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|452207074|ref|YP_007487196.1| - 8e-08 31.5 4.1 3.9e-06 25.9 1.2 2.3 2 0 0 2 2 2 2 Glucose inhibited division protein A DAO PF01266.19 gi|452207074|ref|YP_007487196.1| - 8.4e-08 31.4 20.9 0.0067 15.3 0.9 4.7 5 0 0 5 5 5 3 FAD dependent oxidoreductase Pyr_redox_3 PF13738.1 gi|452207074|ref|YP_007487196.1| - 5.9e-06 26.4 1.5 0.00056 20.0 0.9 2.7 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.2 gi|452207074|ref|YP_007487196.1| - 1.3e-05 24.4 2.1 1.3e-05 24.4 1.4 2.0 2 0 0 2 2 2 1 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|452207074|ref|YP_007487196.1| - 5.1e-05 21.9 4.3 0.029 12.8 0.5 3.4 4 0 0 4 4 4 2 HI0933-like protein FAD_binding_2 PF00890.19 gi|452207074|ref|YP_007487196.1| - 5.2e-05 22.2 13.2 0.00067 18.6 1.1 3.6 3 1 1 4 4 4 2 FAD binding domain UDPG_MGDP_dh_N PF03721.9 gi|452207074|ref|YP_007487196.1| - 0.00043 19.7 0.7 0.00043 19.7 0.5 2.1 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_8 PF13450.1 gi|452207074|ref|YP_007487196.1| - 0.0012 18.8 6.1 0.089 12.8 0.9 2.9 2 1 0 2 2 2 2 NAD(P)-binding Rossmann-like domain XdhC_C PF13478.1 gi|452207074|ref|YP_007487196.1| - 0.0051 17.1 0.1 0.33 11.2 0.0 2.6 2 0 0 2 2 2 1 XdhC Rossmann domain FAD_binding_3 PF01494.14 gi|452207074|ref|YP_007487196.1| - 0.017 14.1 10.4 0.15 11.0 0.1 3.0 3 0 0 3 3 3 0 FAD binding domain 3HCDH_N PF02737.13 gi|452207074|ref|YP_007487196.1| - 0.022 14.4 2.6 0.036 13.7 0.1 2.4 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Trp_halogenase PF04820.9 gi|452207074|ref|YP_007487196.1| - 0.029 13.0 3.7 0.032 12.8 0.4 2.1 2 0 0 2 2 2 0 Tryptophan halogenase NAD_binding_7 PF13241.1 gi|452207074|ref|YP_007487196.1| - 0.031 14.5 1.0 1.3 9.2 0.2 2.7 2 1 0 2 2 2 0 Putative NAD(P)-binding Lycopene_cycl PF05834.7 gi|452207074|ref|YP_007487196.1| - 0.13 11.1 5.7 0.26 10.1 0.1 2.5 3 0 0 3 3 3 0 Lycopene cyclase protein K_oxygenase PF13434.1 gi|452207074|ref|YP_007487196.1| - 0.26 10.1 0.1 6.9 5.4 0.0 2.1 2 0 0 2 2 2 0 L-lysine 6-monooxygenase (NADPH-requiring) Aminotran_1_2 PF00155.16 gi|452207075|ref|YP_007487197.1| - 2.1e-37 128.9 0.0 2.5e-37 128.6 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.14 gi|452207075|ref|YP_007487197.1| - 7e-05 21.7 0.0 0.00016 20.5 0.0 1.5 2 0 0 2 2 2 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.15 gi|452207075|ref|YP_007487197.1| - 0.15 10.3 0.0 0.21 9.8 0.0 1.1 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme DUF1610 PF07754.6 gi|452207076|ref|YP_007487198.1| - 0.0015 18.6 0.2 0.0015 18.6 0.1 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF1610) zinc_ribbon_2 PF13240.1 gi|452207076|ref|YP_007487198.1| - 0.0035 16.7 1.0 0.21 11.0 0.1 2.2 2 0 0 2 2 2 1 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|452207076|ref|YP_007487198.1| - 0.011 14.9 2.6 0.14 11.3 0.3 2.4 2 0 0 2 2 2 0 zinc-ribbon domain DZR PF12773.2 gi|452207076|ref|YP_007487198.1| - 0.012 15.3 0.2 0.04 13.7 0.1 1.8 1 1 0 1 1 1 0 Double zinc ribbon GFA PF04828.9 gi|452207076|ref|YP_007487198.1| - 0.061 13.2 0.3 0.094 12.6 0.2 1.5 1 1 0 1 1 1 0 Glutathione-dependent formaldehyde-activating enzyme zf-RING_3 PF14369.1 gi|452207076|ref|YP_007487198.1| - 0.067 13.2 0.5 0.34 10.9 0.0 2.0 2 0 0 2 2 2 0 zinc-finger Prim_Zn_Ribbon PF08273.7 gi|452207076|ref|YP_007487198.1| - 0.076 13.1 1.1 10 6.3 0.0 2.2 2 0 0 2 2 2 0 Zinc-binding domain of primase-helicase zf-P11 PF03854.9 gi|452207076|ref|YP_007487198.1| - 0.11 11.9 1.1 0.21 11.0 0.8 1.5 1 1 0 1 1 1 0 P-11 zinc finger DUF2296 PF10058.4 gi|452207076|ref|YP_007487198.1| - 0.14 11.9 0.7 0.2 11.4 0.2 1.5 1 1 0 1 1 1 0 Predicted integral membrane metal-binding protein (DUF2296) zf-dskA_traR PF01258.12 gi|452207076|ref|YP_007487198.1| - 0.15 11.8 0.6 13 5.6 0.1 2.3 2 0 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger Nudix_N_2 PF14803.1 gi|452207076|ref|YP_007487198.1| - 0.18 11.5 0.6 0.18 11.5 0.4 2.3 2 1 0 2 2 2 0 Nudix N-terminal zf-C3HC4_4 PF15227.1 gi|452207076|ref|YP_007487198.1| - 0.29 11.0 1.9 1.9 8.4 1.3 2.0 1 1 0 1 1 1 0 zinc finger of C3HC4-type, RING DUF1272 PF06906.6 gi|452207076|ref|YP_007487198.1| - 0.47 10.3 2.9 0.44 10.4 0.4 2.1 2 1 0 2 2 2 0 Protein of unknown function (DUF1272) TF_Zn_Ribbon PF08271.7 gi|452207076|ref|YP_007487198.1| - 2.4 7.5 5.5 6.3 6.2 2.6 2.3 1 1 2 3 3 3 0 TFIIB zinc-binding GCS2 PF04107.8 gi|452207077|ref|YP_007487199.1| - 2.2e-14 53.2 0.2 3.2e-14 52.7 0.1 1.2 1 0 0 1 1 1 1 Glutamate-cysteine ligase family 2(GCS2) GATase PF00117.23 gi|452207078|ref|YP_007487200.1| - 1.4e-21 76.8 0.0 1.8e-21 76.4 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|452207078|ref|YP_007487200.1| - 1.3e-07 31.3 0.6 8.4e-07 28.6 0.4 2.3 1 1 0 1 1 1 1 Peptidase C26 HTS PF04204.11 gi|452207078|ref|YP_007487200.1| - 0.00013 20.7 0.0 0.00023 19.9 0.0 1.4 1 1 0 1 1 1 1 Homoserine O-succinyltransferase GATase_3 PF07685.9 gi|452207078|ref|YP_007487200.1| - 0.058 12.9 0.1 0.084 12.4 0.0 1.5 1 1 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain GTP_EFTU PF00009.22 gi|452207079|ref|YP_007487201.1| - 2.1e-36 125.1 0.0 4.2e-36 124.1 0.0 1.5 2 0 0 2 2 2 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.12 gi|452207079|ref|YP_007487201.1| - 4.9e-16 58.7 0.0 9.3e-16 57.8 0.0 1.5 1 0 0 1 1 1 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.20 gi|452207079|ref|YP_007487201.1| - 6.4e-11 42.2 0.2 1.8e-10 40.7 0.1 1.9 1 0 0 1 1 1 1 Elongation factor Tu domain 2 ATP_bind_1 PF03029.12 gi|452207079|ref|YP_007487201.1| - 0.0008 19.0 0.4 0.0068 15.9 0.0 2.1 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein MMR_HSR1 PF01926.18 gi|452207079|ref|YP_007487201.1| - 0.0096 15.8 0.0 0.02 14.8 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU_D4 PF14578.1 gi|452207079|ref|YP_007487201.1| - 0.016 14.8 0.1 0.044 13.4 0.1 1.8 1 0 0 1 1 1 0 Elongation factor Tu domain 4 Hydrolase_3 PF08282.7 gi|452207080|ref|YP_007487202.1| - 1.7e-26 93.3 0.0 1.4e-17 64.1 0.0 2.0 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase S6PP PF05116.8 gi|452207080|ref|YP_007487202.1| - 2.3e-09 36.9 0.0 1.1e-07 31.3 0.0 2.1 2 0 0 2 2 2 1 Sucrose-6F-phosphate phosphohydrolase Hydrolase PF00702.21 gi|452207080|ref|YP_007487202.1| - 1.5e-05 25.5 0.1 0.22 11.9 0.0 2.2 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|452207080|ref|YP_007487202.1| - 6.9e-05 23.0 0.9 0.0041 17.3 0.0 2.4 1 1 1 2 2 2 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|452207080|ref|YP_007487202.1| - 0.049 13.8 0.4 11 6.2 0.0 2.4 2 0 0 2 2 2 0 Haloacid dehalogenase-like hydrolase Polysacc_deac_2 PF04748.8 gi|452207080|ref|YP_007487202.1| - 0.05 12.6 0.1 0.092 11.7 0.1 1.4 1 1 0 1 1 1 0 Divergent polysaccharide deacetylase Hydrolase_like PF13242.1 gi|452207080|ref|YP_007487202.1| - 1.9 8.2 4.8 0.51 10.0 0.5 2.2 2 1 0 2 2 2 0 HAD-hyrolase-like Inhibitor_I67 PF11405.3 gi|452207081|ref|YP_007487203.1| - 0.0078 16.2 0.9 0.0078 16.2 0.6 1.6 2 1 0 2 2 2 1 Bromelain inhibitor VI zf-HIT PF04438.11 gi|452207081|ref|YP_007487203.1| - 0.038 13.6 5.4 0.041 13.5 1.3 2.2 2 1 0 2 2 2 0 HIT zinc finger UPF0547 PF10571.4 gi|452207081|ref|YP_007487203.1| - 0.21 11.3 2.4 6.2 6.6 0.1 2.4 2 1 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-B_box PF00643.19 gi|452207081|ref|YP_007487203.1| - 0.24 11.2 6.8 0.15 11.9 0.8 2.1 1 1 0 2 2 2 0 B-box zinc finger DZR PF12773.2 gi|452207081|ref|YP_007487203.1| - 0.63 9.9 7.8 3.7 7.4 5.4 1.9 1 1 0 1 1 1 0 Double zinc ribbon zf-C2HC5 PF06221.8 gi|452207081|ref|YP_007487203.1| - 0.86 9.4 6.4 0.17 11.6 1.2 1.9 1 1 1 2 2 2 0 Putative zinc finger motif, C2HC5-type zf-AN1 PF01428.11 gi|452207081|ref|YP_007487203.1| - 1.3 8.9 8.0 9.2 6.2 5.8 2.2 1 1 1 2 2 2 0 AN1-like Zinc finger FYVE PF01363.16 gi|452207081|ref|YP_007487203.1| - 2.2 8.2 8.4 37 4.3 5.8 2.5 1 1 0 1 1 1 0 FYVE zinc finger zf-FPG_IleRS PF06827.9 gi|452207081|ref|YP_007487203.1| - 2.5 7.8 5.8 50 3.6 1.5 3.1 2 1 0 2 2 2 0 Zinc finger found in FPG and IleRS eIF-1a PF01176.14 gi|452207082|ref|YP_007487204.1| - 3.3e-24 84.0 0.3 4e-24 83.7 0.2 1.1 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 DUF3891 PF13030.1 gi|452207082|ref|YP_007487204.1| - 0.074 12.5 0.1 0.13 11.6 0.1 1.4 1 1 1 2 2 2 0 Protein of unknown function (DUF3891) MMR_HSR1_C PF08438.5 gi|452207083|ref|YP_007487205.1| - 7.4e-26 90.5 0.0 1.1e-25 89.9 0.0 1.3 1 0 0 1 1 1 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.18 gi|452207083|ref|YP_007487205.1| - 1.5e-18 66.8 0.0 2.6e-17 62.8 0.0 2.3 2 0 0 2 2 2 1 50S ribosome-binding GTPase TGS PF02824.16 gi|452207083|ref|YP_007487205.1| - 3.3e-08 33.2 0.0 7.1e-08 32.1 0.0 1.6 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.13 gi|452207083|ref|YP_007487205.1| - 1.1e-05 24.7 0.0 0.00016 20.9 0.0 2.3 2 0 0 2 2 2 1 Ferrous iron transport protein B Dynamin_N PF00350.18 gi|452207083|ref|YP_007487205.1| - 0.045 13.5 0.2 0.64 9.8 0.0 2.5 3 0 0 3 3 3 0 Dynamin family ArgK PF03308.11 gi|452207083|ref|YP_007487205.1| - 0.073 11.8 0.0 0.13 10.9 0.0 1.4 1 0 0 1 1 1 0 ArgK protein p450 PF00067.17 gi|452207084|ref|YP_007487206.1| - 8.1e-70 235.6 0.0 9.8e-70 235.3 0.0 1.0 1 0 0 1 1 1 1 Cytochrome P450 E1_dh PF00676.15 gi|452207085|ref|YP_007487207.1| - 1.2e-77 260.6 0.0 2.1e-77 259.7 0.0 1.4 1 1 0 1 1 1 1 Dehydrogenase E1 component DXP_synthase_N PF13292.1 gi|452207085|ref|YP_007487207.1| - 9.8e-06 24.6 0.0 1.4e-05 24.1 0.0 1.2 1 0 0 1 1 1 1 1-deoxy-D-xylulose-5-phosphate synthase TPP_enzyme_C PF02775.16 gi|452207085|ref|YP_007487207.1| - 0.00011 21.7 0.9 0.0011 18.5 0.6 2.2 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Transketolase_N PF00456.16 gi|452207085|ref|YP_007487207.1| - 0.0087 14.8 0.0 0.017 13.9 0.0 1.4 1 0 0 1 1 1 1 Transketolase, thiamine diphosphate binding domain Radical_SAM PF04055.16 gi|452207087|ref|YP_007487209.1| - 1.7e-22 80.3 0.0 3.2e-22 79.4 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily Acetyltransf_1 PF00583.19 gi|452207087|ref|YP_007487209.1| - 8e-12 45.0 0.1 2.3e-11 43.5 0.1 1.9 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|452207087|ref|YP_007487209.1| - 0.0053 16.8 0.2 0.016 15.3 0.1 1.8 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|452207087|ref|YP_007487209.1| - 0.093 12.9 0.1 0.78 9.9 0.1 2.4 2 1 0 2 2 2 0 Acetyltransferase (GNAT) domain tRNA_anti-codon PF01336.20 gi|452207088|ref|YP_007487210.1| - 1.4e-10 40.8 0.0 2.8e-10 39.9 0.0 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain S1 PF00575.18 gi|452207088|ref|YP_007487210.1| - 1.3e-07 31.6 0.0 5.5e-07 29.5 0.0 2.2 1 0 0 1 1 1 1 S1 RNA binding domain tRNA_anti_2 PF13742.1 gi|452207088|ref|YP_007487210.1| - 0.075 12.9 0.0 0.17 11.7 0.0 1.6 1 0 0 1 1 1 0 OB-fold nucleic acid binding domain FMN_red PF03358.10 gi|452207089|ref|YP_007487211.1| - 1e-34 119.2 0.0 1.2e-34 118.9 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|452207089|ref|YP_007487211.1| - 1.4e-08 34.4 0.0 1.9e-08 34.0 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin-like fold Epimerase PF01370.16 gi|452207090|ref|YP_007487212.1| - 9.2e-26 90.7 0.0 1.3e-23 83.6 0.0 2.1 2 0 0 2 2 2 2 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.1 gi|452207090|ref|YP_007487212.1| - 5.4e-15 55.8 0.1 6.9e-15 55.5 0.0 1.1 1 0 0 1 1 1 1 NADH(P)-binding RmlD_sub_bind PF04321.12 gi|452207090|ref|YP_007487212.1| - 7.8e-11 41.3 0.0 1.3e-10 40.7 0.0 1.3 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.7 gi|452207090|ref|YP_007487212.1| - 1.6e-09 37.0 0.0 7.4e-08 31.6 0.0 2.1 2 0 0 2 2 2 1 Male sterility protein 3Beta_HSD PF01073.14 gi|452207090|ref|YP_007487212.1| - 2e-05 23.4 0.0 3e-05 22.8 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.10 gi|452207090|ref|YP_007487212.1| - 0.019 13.8 0.0 0.24 10.2 0.0 2.5 2 1 0 2 2 2 0 Polysaccharide biosynthesis protein adh_short PF00106.20 gi|452207090|ref|YP_007487212.1| - 0.086 12.7 1.2 0.2 11.5 0.8 1.7 1 0 0 1 1 1 0 short chain dehydrogenase HhH-GPD PF00730.20 gi|452207091|ref|YP_007487213.1| - 5.9e-16 58.6 0.0 9.9e-16 57.9 0.0 1.4 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.18 gi|452207091|ref|YP_007487213.1| - 5.1e-08 32.1 0.0 1.6e-07 30.6 0.0 1.9 1 0 0 1 1 1 1 Helix-hairpin-helix motif TENA_THI-4 PF03070.11 gi|452207092|ref|YP_007487214.1| - 2.2e-47 161.5 0.4 2.5e-47 161.3 0.3 1.0 1 0 0 1 1 1 1 TENA/THI-4/PQQC family DUF1127 PF06568.6 gi|452207092|ref|YP_007487214.1| - 0.53 9.7 2.3 3.5 7.1 0.1 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF1127) UPF0016 PF01169.14 gi|452207093|ref|YP_007487215.1| - 3.3e-25 88.0 21.6 1.3e-15 57.2 3.6 2.8 2 1 1 3 3 3 2 Uncharacterized protein family UPF0016 DUF3410 PF11890.3 gi|452207094|ref|YP_007487216.1| - 0.26 10.9 1.1 1.1 8.9 0.3 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF3410) HTH_20 PF12840.2 gi|452207095|ref|YP_007487217.1| - 4.4e-09 36.0 4.1 0.0001 22.0 0.8 2.2 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_24 PF13412.1 gi|452207095|ref|YP_007487217.1| - 1.6e-07 30.5 0.0 0.014 14.7 0.0 2.4 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|452207095|ref|YP_007487217.1| - 1.7e-07 30.7 0.0 1.8e-05 24.3 0.0 2.3 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.15 gi|452207095|ref|YP_007487217.1| - 7e-05 22.4 0.0 0.003 17.2 0.0 2.3 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|452207095|ref|YP_007487217.1| - 7.3e-05 22.3 2.8 0.012 15.3 0.3 2.7 3 0 0 3 3 3 2 MarR family HTH_27 PF13463.1 gi|452207095|ref|YP_007487217.1| - 7.7e-05 22.9 0.4 0.0043 17.3 0.4 2.4 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_IclR PF09339.5 gi|452207095|ref|YP_007487217.1| - 0.00014 21.3 0.2 0.0042 16.6 0.1 2.4 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_29 PF13551.1 gi|452207095|ref|YP_007487217.1| - 0.002 18.2 0.2 0.18 11.9 0.0 2.2 1 1 1 2 2 2 1 Winged helix-turn helix HTH_10 PF04967.7 gi|452207095|ref|YP_007487217.1| - 0.0042 16.6 0.0 1.2 8.7 0.0 2.3 2 0 0 2 2 2 1 HTH DNA binding domain HTH_40 PF14493.1 gi|452207095|ref|YP_007487217.1| - 0.0073 16.5 0.0 0.025 14.7 0.0 1.8 1 1 1 2 2 2 1 Helix-turn-helix domain Penicillinase_R PF03965.11 gi|452207095|ref|YP_007487217.1| - 0.015 15.3 0.1 0.11 12.6 0.0 2.1 1 1 1 2 2 2 0 Penicillinase repressor HTH_Crp_2 PF13545.1 gi|452207095|ref|YP_007487217.1| - 0.04 13.7 0.0 0.14 11.9 0.0 1.9 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain GerE PF00196.14 gi|452207095|ref|YP_007487217.1| - 0.09 12.1 0.0 0.54 9.6 0.0 2.0 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family NosL PF05573.7 gi|452207096|ref|YP_007487218.1| - 3.5e-30 104.6 0.0 4.5e-30 104.3 0.0 1.1 1 0 0 1 1 1 1 NosL zf-FCS PF06467.9 gi|452207096|ref|YP_007487218.1| - 0.05 13.2 1.6 0.4 10.3 1.1 2.2 1 1 0 1 1 1 0 MYM-type Zinc finger with FCS sequence motif TAT_signal PF10518.4 gi|452207096|ref|YP_007487218.1| - 0.66 10.1 6.5 1.6 8.9 4.5 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence ABC2_membrane_2 PF12679.2 gi|452207097|ref|YP_007487219.1| - 1.8e-08 33.6 24.6 1.4e-07 30.6 17.0 1.9 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|452207097|ref|YP_007487219.1| - 3.4e-05 23.1 17.6 4.7e-05 22.6 12.2 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|452207097|ref|YP_007487219.1| - 0.0015 17.7 13.0 0.0033 16.6 9.0 1.6 1 1 0 1 1 1 1 ABC-2 type transporter Vps54 PF07928.7 gi|452207097|ref|YP_007487219.1| - 0.015 15.4 1.5 0.071 13.2 0.0 2.1 2 0 0 2 2 2 0 Vps54-like protein ABC2_membrane_3 PF12698.2 gi|452207097|ref|YP_007487219.1| - 0.078 11.9 18.4 0.0043 16.1 8.9 1.6 1 1 0 1 1 1 0 ABC-2 family transporter protein ABC_tran PF00005.22 gi|452207098|ref|YP_007487220.1| - 2.4e-27 95.8 0.0 3.7e-27 95.2 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|452207098|ref|YP_007487220.1| - 9.3e-18 65.1 0.0 2.5e-08 34.2 0.0 2.2 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|452207098|ref|YP_007487220.1| - 2.4e-07 30.2 0.0 0.0003 20.0 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|452207098|ref|YP_007487220.1| - 4.2e-07 30.4 0.0 5.9e-07 30.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|452207098|ref|YP_007487220.1| - 1.3e-06 27.8 0.0 2.9e-06 26.6 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_10 PF12846.2 gi|452207098|ref|YP_007487220.1| - 0.00026 20.5 0.0 0.012 15.1 0.0 2.1 2 0 0 2 2 2 1 AAA-like domain AAA_30 PF13604.1 gi|452207098|ref|YP_007487220.1| - 0.00038 20.0 0.0 0.0007 19.2 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_13 PF13166.1 gi|452207098|ref|YP_007487220.1| - 0.00046 18.8 0.0 0.082 11.3 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|452207098|ref|YP_007487220.1| - 0.00054 19.8 0.0 0.0012 18.7 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|452207098|ref|YP_007487220.1| - 0.00055 19.9 0.0 0.00083 19.3 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_19 PF13245.1 gi|452207098|ref|YP_007487220.1| - 0.00086 19.0 1.4 0.0028 17.3 1.0 2.1 1 1 0 1 1 1 1 Part of AAA domain AAA_22 PF13401.1 gi|452207098|ref|YP_007487220.1| - 0.00098 19.2 0.1 0.003 17.6 0.0 2.1 2 1 0 2 2 1 1 AAA domain Arch_ATPase PF01637.13 gi|452207098|ref|YP_007487220.1| - 0.0013 18.4 0.0 0.0016 18.1 0.0 1.2 1 0 0 1 1 1 1 Archaeal ATPase AAA_15 PF13175.1 gi|452207098|ref|YP_007487220.1| - 0.0017 17.4 0.0 0.0069 15.4 0.0 1.7 2 0 0 2 2 2 1 AAA ATPase domain MobB PF03205.9 gi|452207098|ref|YP_007487220.1| - 0.0035 17.0 0.1 0.0074 15.9 0.1 1.5 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_25 PF13481.1 gi|452207098|ref|YP_007487220.1| - 0.0038 16.6 0.3 0.012 15.0 0.2 1.9 1 1 0 1 1 1 1 AAA domain cobW PF02492.14 gi|452207098|ref|YP_007487220.1| - 0.013 14.9 0.1 0.023 14.1 0.1 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain NACHT PF05729.7 gi|452207098|ref|YP_007487220.1| - 0.014 15.0 0.0 0.022 14.4 0.0 1.3 1 0 0 1 1 1 0 NACHT domain AAA_28 PF13521.1 gi|452207098|ref|YP_007487220.1| - 0.015 15.3 0.0 0.023 14.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|452207098|ref|YP_007487220.1| - 0.015 16.1 0.0 0.029 15.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain Adeno_IVa2 PF02456.10 gi|452207098|ref|YP_007487220.1| - 0.016 13.8 0.0 0.022 13.4 0.0 1.1 1 0 0 1 1 1 0 Adenovirus IVa2 protein ABC_ATPase PF09818.4 gi|452207098|ref|YP_007487220.1| - 0.028 13.0 0.0 0.043 12.3 0.0 1.2 1 0 0 1 1 1 0 Predicted ATPase of the ABC class DUF258 PF03193.11 gi|452207098|ref|YP_007487220.1| - 0.036 13.2 0.0 0.054 12.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF258 Miro PF08477.8 gi|452207098|ref|YP_007487220.1| - 0.038 14.5 0.0 0.066 13.7 0.0 1.4 1 0 0 1 1 1 0 Miro-like protein AAA PF00004.24 gi|452207098|ref|YP_007487220.1| - 0.041 14.0 0.0 0.077 13.1 0.0 1.6 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) DUF3584 PF12128.3 gi|452207098|ref|YP_007487220.1| - 0.045 11.0 0.0 0.058 10.7 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) UPF0079 PF02367.12 gi|452207098|ref|YP_007487220.1| - 0.055 13.1 0.0 0.094 12.3 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 MutS_V PF00488.16 gi|452207098|ref|YP_007487220.1| - 0.094 12.1 0.0 0.33 10.3 0.0 1.7 2 0 0 2 2 2 0 MutS domain V MMR_HSR1 PF01926.18 gi|452207098|ref|YP_007487220.1| - 0.11 12.4 0.0 0.19 11.6 0.0 1.4 1 0 0 1 1 1 0 50S ribosome-binding GTPase FtsK_SpoIIIE PF01580.13 gi|452207098|ref|YP_007487220.1| - 0.12 11.7 0.0 0.22 10.9 0.0 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family ATP_bind_1 PF03029.12 gi|452207098|ref|YP_007487220.1| - 0.13 11.8 0.0 0.19 11.2 0.0 1.2 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_14 PF13173.1 gi|452207098|ref|YP_007487220.1| - 0.15 12.0 0.0 0.28 11.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain HycI PF01750.13 gi|452207098|ref|YP_007487220.1| - 0.16 11.5 0.1 7.8 6.0 0.0 2.2 2 0 0 2 2 2 0 Hydrogenase maturation protease NB-ARC PF00931.17 gi|452207098|ref|YP_007487220.1| - 0.17 10.7 0.0 0.25 10.1 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain NosD PF05048.8 gi|452207099|ref|YP_007487221.1| - 1.4e-30 106.2 0.5 1.2e-26 93.2 0.0 2.1 1 1 1 2 2 2 2 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.1 gi|452207099|ref|YP_007487221.1| - 1.4e-22 80.1 20.6 9.1e-14 51.4 1.0 3.4 1 1 2 3 3 3 3 Right handed beta helix region NosL PF05573.7 gi|452207099|ref|YP_007487221.1| - 2.4e-11 43.5 0.1 5.1e-11 42.4 0.0 1.4 1 0 0 1 1 1 1 NosL DUF1565 PF07602.6 gi|452207099|ref|YP_007487221.1| - 8.3e-05 21.8 6.7 0.043 12.9 2.7 2.8 2 1 0 2 2 2 2 Protein of unknown function (DUF1565) ABC2_membrane_2 PF12679.2 gi|452207100|ref|YP_007487222.1| - 1.3e-12 47.2 17.1 2.7e-12 46.1 11.9 1.6 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|452207100|ref|YP_007487222.1| - 2.7 6.9 9.0 3.3 6.6 5.6 1.5 1 1 1 2 2 2 0 ABC-2 family transporter protein ABC_tran PF00005.22 gi|452207101|ref|YP_007487223.1| - 7.7e-27 94.2 0.0 1.1e-26 93.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|452207101|ref|YP_007487223.1| - 1e-14 55.1 0.0 1e-07 32.2 0.0 2.1 1 1 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|452207101|ref|YP_007487223.1| - 1.5e-06 27.5 0.1 0.025 13.8 0.1 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|452207101|ref|YP_007487223.1| - 4.8e-06 26.6 0.1 1.1e-05 25.5 0.1 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|452207101|ref|YP_007487223.1| - 0.00027 21.0 0.0 0.0011 19.1 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|452207101|ref|YP_007487223.1| - 0.00037 19.9 0.1 0.0018 17.7 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|452207101|ref|YP_007487223.1| - 0.00057 19.3 0.2 0.0013 18.2 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain NACHT PF05729.7 gi|452207101|ref|YP_007487223.1| - 0.00064 19.4 0.0 0.0011 18.6 0.0 1.3 1 0 0 1 1 1 1 NACHT domain MobB PF03205.9 gi|452207101|ref|YP_007487223.1| - 0.00084 19.0 1.1 0.002 17.8 0.1 1.9 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_33 PF13671.1 gi|452207101|ref|YP_007487223.1| - 0.001 18.9 0.1 0.0013 18.6 0.0 1.5 1 1 0 1 1 1 1 AAA domain UPF0079 PF02367.12 gi|452207101|ref|YP_007487223.1| - 0.0016 18.0 0.0 0.0031 17.1 0.0 1.4 1 0 0 1 1 1 1 Uncharacterised P-loop hydrolase UPF0079 AAA_10 PF12846.2 gi|452207101|ref|YP_007487223.1| - 0.0018 17.7 0.0 0.021 14.2 0.0 2.0 2 0 0 2 2 2 1 AAA-like domain AAA_23 PF13476.1 gi|452207101|ref|YP_007487223.1| - 0.0021 18.4 0.1 0.0028 17.9 0.0 1.1 1 0 0 1 1 1 1 AAA domain RecA PF00154.16 gi|452207101|ref|YP_007487223.1| - 0.0023 17.0 0.0 0.0046 16.0 0.0 1.5 1 0 0 1 1 1 1 recA bacterial DNA recombination protein AAA_13 PF13166.1 gi|452207101|ref|YP_007487223.1| - 0.0037 15.7 0.0 0.99 7.7 0.0 2.0 2 0 0 2 2 2 2 AAA domain AAA_17 PF13207.1 gi|452207101|ref|YP_007487223.1| - 0.0038 18.0 0.0 0.0086 16.8 0.0 1.6 2 0 0 2 2 1 1 AAA domain Arch_ATPase PF01637.13 gi|452207101|ref|YP_007487223.1| - 0.0039 16.9 0.0 0.0057 16.3 0.0 1.2 1 0 0 1 1 1 1 Archaeal ATPase AAA_28 PF13521.1 gi|452207101|ref|YP_007487223.1| - 0.0081 16.1 0.2 0.061 13.2 0.0 2.2 2 0 0 2 2 2 1 AAA domain FtsK_SpoIIIE PF01580.13 gi|452207101|ref|YP_007487223.1| - 0.0085 15.5 0.3 0.017 14.5 0.1 1.6 2 0 0 2 2 2 1 FtsK/SpoIIIE family AAA_14 PF13173.1 gi|452207101|ref|YP_007487223.1| - 0.011 15.5 0.0 0.02 14.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain cobW PF02492.14 gi|452207101|ref|YP_007487223.1| - 0.014 14.8 0.7 0.027 13.9 0.1 1.7 2 0 0 2 2 1 0 CobW/HypB/UreG, nucleotide-binding domain T2SE PF00437.15 gi|452207101|ref|YP_007487223.1| - 0.014 14.2 0.1 0.025 13.4 0.1 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_24 PF13479.1 gi|452207101|ref|YP_007487223.1| - 0.017 14.7 0.7 0.094 12.2 0.0 1.9 2 0 0 2 2 2 0 AAA domain Miro PF08477.8 gi|452207101|ref|YP_007487223.1| - 0.019 15.4 0.0 0.036 14.5 0.0 1.4 1 0 0 1 1 1 0 Miro-like protein DUF258 PF03193.11 gi|452207101|ref|YP_007487223.1| - 0.021 14.0 0.1 0.033 13.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF258 Adeno_IVa2 PF02456.10 gi|452207101|ref|YP_007487223.1| - 0.026 13.2 0.1 0.038 12.6 0.0 1.2 1 0 0 1 1 1 0 Adenovirus IVa2 protein AAA_19 PF13245.1 gi|452207101|ref|YP_007487223.1| - 0.033 13.9 4.3 0.043 13.5 1.4 2.5 2 1 0 2 2 2 0 Part of AAA domain SbcCD_C PF13558.1 gi|452207101|ref|YP_007487223.1| - 0.037 13.9 0.0 0.12 12.2 0.0 1.9 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_15 PF13175.1 gi|452207101|ref|YP_007487223.1| - 0.041 12.9 0.0 0.72 8.8 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain DLIC PF05783.6 gi|452207101|ref|YP_007487223.1| - 0.046 12.3 0.0 0.066 11.8 0.0 1.1 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) AAA PF00004.24 gi|452207101|ref|YP_007487223.1| - 0.063 13.4 0.0 0.11 12.7 0.0 1.6 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.1 gi|452207101|ref|YP_007487223.1| - 0.072 12.6 2.7 0.16 11.5 0.0 2.3 2 1 0 2 2 2 0 AAA domain PhoH PF02562.11 gi|452207101|ref|YP_007487223.1| - 0.076 12.2 0.1 2.3 7.3 0.0 2.1 2 0 0 2 2 2 0 PhoH-like protein SRP54 PF00448.17 gi|452207101|ref|YP_007487223.1| - 0.11 11.9 0.0 0.18 11.2 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_18 PF13238.1 gi|452207101|ref|YP_007487223.1| - 0.11 12.8 0.0 0.2 11.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain ATP_bind_1 PF03029.12 gi|452207101|ref|YP_007487223.1| - 0.11 12.0 0.2 0.33 10.4 0.1 1.7 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein NB-ARC PF00931.17 gi|452207101|ref|YP_007487223.1| - 0.11 11.3 0.1 0.28 10.0 0.0 1.6 2 0 0 2 2 2 0 NB-ARC domain ABC_ATPase PF09818.4 gi|452207101|ref|YP_007487223.1| - 0.12 10.9 0.5 0.23 9.9 0.0 1.6 2 0 0 2 2 2 0 Predicted ATPase of the ABC class PIF1 PF05970.9 gi|452207101|ref|YP_007487223.1| - 0.14 11.0 0.0 0.22 10.4 0.0 1.2 1 0 0 1 1 1 0 PIF1-like helicase KaiC PF06745.8 gi|452207101|ref|YP_007487223.1| - 0.15 11.1 0.1 0.35 9.9 0.0 1.5 2 0 0 2 2 2 0 KaiC DUF3584 PF12128.3 gi|452207101|ref|YP_007487223.1| - 0.15 9.3 0.1 0.19 9.0 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) Dynamin_N PF00350.18 gi|452207101|ref|YP_007487223.1| - 0.15 11.8 0.0 0.23 11.2 0.0 1.3 1 0 0 1 1 1 0 Dynamin family NosD PF05048.8 gi|452207102|ref|YP_007487224.1| - 1.6e-24 86.3 0.0 2.4e-24 85.7 0.0 1.1 1 0 0 1 1 1 1 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.1 gi|452207102|ref|YP_007487224.1| - 5.1e-12 45.8 8.3 4.5e-11 42.7 5.8 2.2 1 1 0 1 1 1 1 Right handed beta helix region NosL PF05573.7 gi|452207102|ref|YP_007487224.1| - 9.9e-10 38.2 0.0 1.8e-09 37.4 0.0 1.3 1 0 0 1 1 1 1 NosL DUF1565 PF07602.6 gi|452207102|ref|YP_007487224.1| - 1.9e-06 27.2 3.1 0.014 14.5 0.0 2.8 2 1 0 2 2 2 2 Protein of unknown function (DUF1565) TRAM PF01938.15 gi|452207103|ref|YP_007487225.1| - 5.6e-13 48.4 3.6 9.7e-13 47.7 2.5 1.4 1 0 0 1 1 1 1 TRAM domain Neisseria_TspB PF05616.8 gi|452207103|ref|YP_007487225.1| - 0.081 11.2 2.0 0.09 11.1 1.4 1.1 1 0 0 1 1 1 0 Neisseria meningitidis TspB protein PHO4 PF01384.15 gi|452207104|ref|YP_007487226.1| - 7.4e-54 182.5 30.0 7.4e-54 182.5 20.8 1.6 2 0 0 2 2 2 1 Phosphate transporter family DUF2304 PF10066.4 gi|452207104|ref|YP_007487226.1| - 0.056 13.2 0.0 0.21 11.4 0.0 2.0 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2304) DUF3353 PF11833.3 gi|452207104|ref|YP_007487226.1| - 0.18 11.2 1.3 0.57 9.6 0.9 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF3353) SpoVS PF04232.7 gi|452207104|ref|YP_007487226.1| - 0.2 11.2 2.9 0.33 10.5 0.3 2.6 2 2 0 2 2 2 0 Stage V sporulation protein S (SpoVS) DUF445 PF04286.7 gi|452207105|ref|YP_007487227.1| - 5.1e-06 26.2 22.6 6e-05 22.7 15.7 2.4 1 1 0 1 1 1 1 Protein of unknown function (DUF445) YpjP PF14005.1 gi|452207105|ref|YP_007487227.1| - 0.00022 21.0 22.0 1.7 8.3 0.7 4.4 1 1 2 3 3 3 3 YpjP-like protein Nexin_C PF08628.7 gi|452207105|ref|YP_007487227.1| - 0.00074 19.5 7.6 5.7 7.0 0.1 5.6 1 1 2 4 4 4 1 Sorting nexin C terminal EcsC PF12787.2 gi|452207105|ref|YP_007487227.1| - 0.018 14.4 6.4 23 4.2 4.4 3.5 1 1 0 1 1 1 0 EcsC protein family COMPASS-Shg1 PF05205.7 gi|452207105|ref|YP_007487227.1| - 0.032 14.5 18.7 5.9e+03 -2.4 13.0 4.2 1 1 0 1 1 1 0 COMPASS (Complex proteins associated with Set1p) component shg1 SecA_SW PF07516.8 gi|452207105|ref|YP_007487227.1| - 0.056 13.2 17.3 1.8 8.2 7.1 2.4 1 1 1 2 2 2 0 SecA Wing and Scaffold domain Tcp11 PF05794.8 gi|452207105|ref|YP_007487227.1| - 1.3 7.6 13.0 2.6 6.6 3.4 2.0 1 1 1 2 2 2 0 T-complex protein 11 Phage_connect_1 PF05135.8 gi|452207105|ref|YP_007487227.1| - 2.3 8.4 6.6 4.7e+02 1.0 4.6 3.2 1 1 0 1 1 1 0 Phage gp6-like head-tail connector protein SAC3 PF12209.3 gi|452207105|ref|YP_007487227.1| - 3.4 7.8 20.0 1.5e+04 -12.2 13.9 5.9 1 1 0 1 1 0 0 Leucine permease transcriptional regulator helical domain DUF760 PF05542.6 gi|452207105|ref|YP_007487227.1| - 4.8 7.4 16.5 1.5e+04 -8.2 11.4 4.8 1 1 0 1 1 0 0 Protein of unknown function (DUF760) CbiX PF01903.12 gi|452207105|ref|YP_007487227.1| - 8.1 6.6 17.0 67 3.6 0.2 3.6 2 1 0 2 2 2 0 CbiX CBFD_NFYB_HMF PF00808.18 gi|452207105|ref|YP_007487227.1| - 8.8 6.4 21.2 8.4 6.5 0.8 5.4 1 1 3 4 4 4 0 Histone-like transcription factor (CBF/NF-Y) and archaeal histone ARGLU PF15346.1 gi|452207105|ref|YP_007487227.1| - 9.9 5.9 57.0 52 3.5 9.7 4.9 1 1 1 2 2 1 0 Arginine and glutamate-rich 1 Usp PF00582.21 gi|452207106|ref|YP_007487228.1| - 5.8e-25 88.1 5.2 6.6e-25 87.9 3.6 1.0 1 0 0 1 1 1 1 Universal stress protein family Metallophos_2 PF12850.2 gi|452207107|ref|YP_007487229.1| - 5.3e-12 45.8 0.0 4.5e-11 42.8 0.0 2.0 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|452207107|ref|YP_007487229.1| - 0.00029 20.2 0.6 0.049 13.0 0.5 2.7 2 1 0 2 2 2 2 Calcineurin-like phosphoesterase PS_Dcarbxylase PF02666.10 gi|452207108|ref|YP_007487230.1| - 1.7e-27 96.0 0.9 3.1e-24 85.3 0.0 2.0 1 1 1 2 2 2 2 Phosphatidylserine decarboxylase zf-C2H2_4 PF13894.1 gi|452207111|ref|YP_007487233.1| - 0.0014 18.8 0.1 0.0018 18.4 0.1 1.2 1 0 0 1 1 1 1 C2H2-type zinc finger zf-C2H2_3 PF13878.1 gi|452207111|ref|YP_007487233.1| - 0.0094 15.5 1.0 0.014 14.8 0.7 1.3 1 1 0 1 1 1 1 zinc-finger of acetyl-transferase ESCO zf-C2H2 PF00096.21 gi|452207111|ref|YP_007487233.1| - 0.064 13.6 0.1 0.084 13.2 0.1 1.2 1 0 0 1 1 1 0 Zinc finger, C2H2 type Zn-ribbon_8 PF09723.5 gi|452207111|ref|YP_007487233.1| - 0.14 12.1 0.7 0.18 11.8 0.5 1.3 1 0 0 1 1 1 0 Zinc ribbon domain RNA_POL_M_15KD PF02150.11 gi|452207111|ref|YP_007487233.1| - 0.39 10.4 3.3 2.2 8.0 0.3 2.1 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit AAA PF00004.24 gi|452207112|ref|YP_007487234.1| - 2e-94 312.7 0.0 5.5e-46 156.0 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.13 gi|452207112|ref|YP_007487234.1| - 3.9e-22 77.9 1.1 4.2e-21 74.6 0.2 3.0 3 0 0 3 3 3 1 Cell division protein 48 (CDC48), N-terminal domain AAA_16 PF13191.1 gi|452207112|ref|YP_007487234.1| - 3.3e-15 56.5 4.1 7.9e-07 29.2 0.1 4.1 3 2 0 3 3 3 2 AAA ATPase domain AAA_22 PF13401.1 gi|452207112|ref|YP_007487234.1| - 7.7e-15 55.1 0.5 0.0035 17.4 0.0 4.2 2 2 1 3 3 3 3 AAA domain RuvB_N PF05496.7 gi|452207112|ref|YP_007487234.1| - 1.4e-14 53.7 0.0 1e-06 27.9 0.0 2.7 2 0 0 2 2 2 2 Holliday junction DNA helicase ruvB N-terminus AAA_2 PF07724.9 gi|452207112|ref|YP_007487234.1| - 1.6e-12 47.6 0.0 1.1e-05 25.4 0.0 2.4 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_5 PF07728.9 gi|452207112|ref|YP_007487234.1| - 3.1e-11 43.1 1.1 0.00068 19.3 0.1 4.0 3 2 0 3 3 2 2 AAA domain (dynein-related subfamily) AAA_17 PF13207.1 gi|452207112|ref|YP_007487234.1| - 3.3e-11 44.0 0.9 0.00013 22.7 0.1 3.3 2 2 1 3 3 2 2 AAA domain AAA_33 PF13671.1 gi|452207112|ref|YP_007487234.1| - 1.1e-10 41.5 0.0 0.0008 19.3 0.0 2.7 2 0 0 2 2 2 2 AAA domain AAA_19 PF13245.1 gi|452207112|ref|YP_007487234.1| - 3.5e-10 39.4 0.0 0.0013 18.4 0.0 3.8 2 0 0 2 2 2 2 Part of AAA domain TIP49 PF06068.8 gi|452207112|ref|YP_007487234.1| - 1.6e-09 37.0 0.0 0.00021 20.1 0.0 2.3 2 0 0 2 2 2 2 TIP49 C-terminus AAA_14 PF13173.1 gi|452207112|ref|YP_007487234.1| - 2.2e-09 37.3 0.0 0.002 18.0 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_25 PF13481.1 gi|452207112|ref|YP_007487234.1| - 3.8e-09 36.2 10.5 0.19 11.1 0.1 4.4 2 2 2 4 4 4 4 AAA domain AAA_28 PF13521.1 gi|452207112|ref|YP_007487234.1| - 6.2e-09 36.0 0.1 0.0018 18.2 0.0 3.3 3 0 0 3 3 2 2 AAA domain AAA_18 PF13238.1 gi|452207112|ref|YP_007487234.1| - 7.4e-09 35.9 0.0 0.0026 18.0 0.0 2.5 2 0 0 2 2 2 2 AAA domain IstB_IS21 PF01695.12 gi|452207112|ref|YP_007487234.1| - 2.1e-08 33.7 0.0 0.0054 16.1 0.0 2.5 2 0 0 2 2 2 2 IstB-like ATP binding protein RNA_helicase PF00910.17 gi|452207112|ref|YP_007487234.1| - 5.3e-08 32.9 0.0 0.0019 18.3 0.0 2.4 2 0 0 2 2 2 2 RNA helicase Zeta_toxin PF06414.7 gi|452207112|ref|YP_007487234.1| - 3.5e-07 29.5 0.0 0.0064 15.6 0.0 2.6 2 0 0 2 2 2 2 Zeta toxin Mg_chelatase PF01078.16 gi|452207112|ref|YP_007487234.1| - 4.4e-07 29.2 0.1 0.029 13.5 0.1 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI KaiC PF06745.8 gi|452207112|ref|YP_007487234.1| - 1.1e-06 28.0 0.3 0.38 9.8 0.0 3.3 2 1 1 3 3 3 2 KaiC AAA_24 PF13479.1 gi|452207112|ref|YP_007487234.1| - 2.2e-06 27.4 0.0 0.053 13.0 0.0 2.4 2 0 0 2 2 2 2 AAA domain Sigma54_activ_2 PF14532.1 gi|452207112|ref|YP_007487234.1| - 2.5e-06 27.5 0.0 0.074 13.1 0.0 2.4 2 0 0 2 2 2 2 Sigma-54 interaction domain Arch_ATPase PF01637.13 gi|452207112|ref|YP_007487234.1| - 9.1e-06 25.5 0.0 0.11 12.2 0.0 2.7 2 1 0 2 2 2 2 Archaeal ATPase Sigma54_activat PF00158.21 gi|452207112|ref|YP_007487234.1| - 1e-05 25.0 0.0 0.19 11.1 0.0 3.0 2 1 0 2 2 2 2 Sigma-54 interaction domain AAA_3 PF07726.6 gi|452207112|ref|YP_007487234.1| - 1.1e-05 25.0 0.0 0.067 12.7 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) Parvo_NS1 PF01057.12 gi|452207112|ref|YP_007487234.1| - 1.8e-05 23.7 0.0 0.072 11.9 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 NACHT PF05729.7 gi|452207112|ref|YP_007487234.1| - 3e-05 23.7 0.1 1.1 8.8 0.0 3.9 4 0 0 4 4 4 1 NACHT domain ABC_tran PF00005.22 gi|452207112|ref|YP_007487234.1| - 3.1e-05 24.2 0.0 0.36 11.1 0.0 2.5 2 0 0 2 2 2 2 ABC transporter PhoH PF02562.11 gi|452207112|ref|YP_007487234.1| - 3.3e-05 23.2 0.0 0.37 9.9 0.0 3.0 4 0 0 4 4 2 2 PhoH-like protein NB-ARC PF00931.17 gi|452207112|ref|YP_007487234.1| - 4.7e-05 22.3 0.0 0.012 14.5 0.0 2.2 2 0 0 2 2 2 1 NB-ARC domain DUF815 PF05673.8 gi|452207112|ref|YP_007487234.1| - 6.7e-05 21.9 0.0 0.18 10.6 0.0 2.3 2 0 0 2 2 2 2 Protein of unknown function (DUF815) DUF2075 PF09848.4 gi|452207112|ref|YP_007487234.1| - 0.00011 21.3 0.0 0.16 10.8 0.0 2.2 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) AAA_11 PF13086.1 gi|452207112|ref|YP_007487234.1| - 0.00054 19.6 0.0 1 8.8 0.0 2.3 2 0 0 2 2 2 2 AAA domain CDC48_2 PF02933.12 gi|452207112|ref|YP_007487234.1| - 0.00067 19.2 2.1 0.0012 18.3 0.0 2.5 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), domain 2 UPF0079 PF02367.12 gi|452207112|ref|YP_007487234.1| - 0.00075 19.1 0.0 1.6 8.3 0.0 2.4 2 0 0 2 2 2 2 Uncharacterised P-loop hydrolase UPF0079 Cytidylate_kin2 PF13189.1 gi|452207112|ref|YP_007487234.1| - 0.0018 18.2 0.0 0.35 10.7 0.0 2.4 2 0 0 2 2 2 1 Cytidylate kinase-like family KTI12 PF08433.5 gi|452207112|ref|YP_007487234.1| - 0.0022 17.2 0.0 0.36 9.9 0.0 2.3 2 0 0 2 2 2 1 Chromatin associated protein KTI12 KAP_NTPase PF07693.9 gi|452207112|ref|YP_007487234.1| - 0.0024 16.9 0.0 4.2 6.2 0.0 3.0 2 1 1 3 3 3 0 KAP family P-loop domain NTPase_1 PF03266.10 gi|452207112|ref|YP_007487234.1| - 0.0046 16.6 0.6 6.5 6.4 0.0 4.0 3 2 0 4 4 3 0 NTPase SKI PF01202.17 gi|452207112|ref|YP_007487234.1| - 0.0061 16.4 0.0 3.7 7.4 0.0 2.6 2 0 0 2 2 2 0 Shikimate kinase AAA_30 PF13604.1 gi|452207112|ref|YP_007487234.1| - 0.0079 15.7 5.2 0.86 9.1 0.2 3.7 3 1 0 3 3 3 1 AAA domain Multi_ubiq PF14452.1 gi|452207112|ref|YP_007487234.1| - 0.013 15.4 0.8 0.12 12.4 0.1 3.1 3 1 0 3 3 1 0 Multiubiquitin MMR_HSR1 PF01926.18 gi|452207112|ref|YP_007487234.1| - 0.02 14.8 0.0 7.3 6.5 0.0 2.7 2 0 0 2 2 2 0 50S ribosome-binding GTPase Viral_helicase1 PF01443.13 gi|452207112|ref|YP_007487234.1| - 0.023 14.2 0.0 5.5 6.4 0.0 2.2 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase T2SE PF00437.15 gi|452207112|ref|YP_007487234.1| - 0.032 13.1 0.0 1.3 7.8 0.0 2.4 2 0 0 2 2 2 0 Type II/IV secretion system protein AFG1_ATPase PF03969.11 gi|452207112|ref|YP_007487234.1| - 0.048 12.4 0.0 4.9 5.8 0.0 2.5 2 0 0 2 2 2 0 AFG1-like ATPase ResIII PF04851.10 gi|452207112|ref|YP_007487234.1| - 0.056 13.2 0.0 6.9 6.4 0.0 2.4 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit Bac_DnaA PF00308.13 gi|452207112|ref|YP_007487234.1| - 0.062 12.9 0.0 8.7 5.9 0.0 2.6 2 1 0 2 2 2 0 Bacterial dnaA protein ATP-synt_ab PF00006.20 gi|452207112|ref|YP_007487234.1| - 0.095 12.1 0.0 9 5.7 0.0 2.3 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain PIF1 PF05970.9 gi|452207112|ref|YP_007487234.1| - 0.11 11.4 0.0 13 4.5 0.0 3.0 2 1 1 3 3 3 0 PIF1-like helicase AAA_23 PF13476.1 gi|452207112|ref|YP_007487234.1| - 0.13 12.5 0.1 18 5.5 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_21 PF13304.1 gi|452207112|ref|YP_007487234.1| - 0.21 11.5 0.1 20 5.0 0.0 2.9 2 2 0 2 2 2 0 AAA domain Antitoxin-MazE PF04014.13 gi|452207112|ref|YP_007487234.1| - 0.24 11.1 1.8 1.4 8.6 0.1 2.5 2 0 0 2 2 2 0 Antidote-toxin recognition MazE HATPase_c PF02518.21 gi|452207113|ref|YP_007487235.1| - 1.2e-17 63.5 0.0 3.9e-17 61.9 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.1 gi|452207113|ref|YP_007487235.1| - 2.1e-06 27.5 0.8 7.7e-06 25.7 0.1 2.1 1 1 0 2 2 2 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.1 gi|452207113|ref|YP_007487235.1| - 9.6e-05 22.0 0.0 0.00019 21.1 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.1 gi|452207113|ref|YP_007487235.1| - 0.00016 21.3 0.0 0.00048 19.8 0.0 1.8 1 0 0 1 1 1 1 PAS domain PAS_9 PF13426.1 gi|452207113|ref|YP_007487235.1| - 0.00018 21.8 0.1 0.00041 20.6 0.0 1.7 1 0 0 1 1 1 1 PAS domain PAS PF00989.19 gi|452207113|ref|YP_007487235.1| - 0.0032 17.2 1.2 0.046 13.5 0.8 2.5 1 1 0 1 1 1 1 PAS fold PAS_4 PF08448.5 gi|452207113|ref|YP_007487235.1| - 0.013 15.5 0.5 0.57 10.2 0.3 2.6 1 1 0 1 1 1 0 PAS fold HATPase_c_5 PF14501.1 gi|452207113|ref|YP_007487235.1| - 0.12 12.0 0.0 0.3 10.8 0.0 1.6 1 0 0 1 1 1 0 GHKL domain Peptidase_M20 PF01546.23 gi|452207114|ref|YP_007487236.1| - 2.1e-32 112.1 0.6 3.1e-32 111.5 0.4 1.2 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|452207114|ref|YP_007487236.1| - 3e-18 65.6 0.0 6.3e-18 64.5 0.0 1.5 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M28 PF04389.12 gi|452207114|ref|YP_007487236.1| - 7.1e-07 29.1 0.1 0.0012 18.6 0.0 2.2 2 0 0 2 2 2 2 Peptidase family M28 Peptidase_M42 PF05343.9 gi|452207114|ref|YP_007487236.1| - 0.054 12.2 0.0 0.65 8.7 0.0 2.2 3 0 0 3 3 3 0 M42 glutamyl aminopeptidase Thioredoxin PF00085.15 gi|452207115|ref|YP_007487237.1| - 9.7e-13 47.7 0.0 1.2e-12 47.4 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin DUF836 PF05768.9 gi|452207115|ref|YP_007487237.1| - 3e-06 27.3 0.0 4.4e-06 26.8 0.0 1.3 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) Thioredoxin_2 PF13098.1 gi|452207115|ref|YP_007487237.1| - 0.00038 20.6 0.0 0.014 15.6 0.0 2.1 1 1 0 1 1 1 1 Thioredoxin-like domain TraF PF13728.1 gi|452207115|ref|YP_007487237.1| - 0.00083 18.8 0.0 0.0026 17.2 0.0 1.7 1 1 0 1 1 1 1 F plasmid transfer operon protein Thioredoxin_3 PF13192.1 gi|452207115|ref|YP_007487237.1| - 0.093 12.5 0.0 0.12 12.1 0.0 1.2 1 0 0 1 1 1 0 Thioredoxin domain DAO PF01266.19 gi|452207116|ref|YP_007487238.1| - 3.9e-14 52.3 5.7 5.4e-07 28.8 1.0 2.2 1 1 0 2 2 2 2 FAD dependent oxidoreductase FAD_oxidored PF12831.2 gi|452207116|ref|YP_007487238.1| - 5.7e-14 52.0 6.9 2.5e-13 49.9 4.8 1.9 1 1 0 1 1 1 1 FAD dependent oxidoreductase Trp_halogenase PF04820.9 gi|452207116|ref|YP_007487238.1| - 1.4e-11 43.7 3.2 3.4e-07 29.2 0.1 2.3 1 1 1 2 2 2 2 Tryptophan halogenase FAD_binding_2 PF00890.19 gi|452207116|ref|YP_007487238.1| - 2.9e-11 42.8 6.1 2.7e-06 26.4 1.2 2.4 2 0 0 2 2 2 2 FAD binding domain GIDA PF01134.17 gi|452207116|ref|YP_007487238.1| - 9.8e-09 34.5 1.5 1.8e-08 33.6 1.0 1.4 1 1 0 1 1 1 1 Glucose inhibited division protein A HI0933_like PF03486.9 gi|452207116|ref|YP_007487238.1| - 1.1e-07 30.7 0.8 1.7e-05 23.4 0.1 2.2 2 0 0 2 2 2 2 HI0933-like protein Lycopene_cycl PF05834.7 gi|452207116|ref|YP_007487238.1| - 1.5e-07 30.7 0.1 3e-07 29.6 0.1 1.4 1 1 0 1 1 1 1 Lycopene cyclase protein NAD_binding_8 PF13450.1 gi|452207116|ref|YP_007487238.1| - 1.9e-06 27.8 1.2 1.3e-05 25.1 0.2 2.7 2 1 1 3 3 3 1 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.1 gi|452207116|ref|YP_007487238.1| - 6.7e-06 26.3 0.0 1.1e-05 25.6 0.0 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|452207116|ref|YP_007487238.1| - 7.7e-06 26.2 2.2 0.0009 19.5 0.2 2.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.9 gi|452207116|ref|YP_007487238.1| - 1.6e-05 24.8 1.6 6.2e-05 22.9 1.1 1.9 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|452207116|ref|YP_007487238.1| - 1.9e-05 23.8 2.6 0.00018 20.7 1.8 2.1 1 1 0 1 1 1 1 FAD binding domain Thi4 PF01946.12 gi|452207116|ref|YP_007487238.1| - 2.5e-05 23.4 2.2 3.1e-05 23.1 0.3 1.9 2 0 0 2 2 2 1 Thi4 family GMC_oxred_N PF00732.14 gi|452207116|ref|YP_007487238.1| - 0.0014 17.8 0.9 3.2 6.8 0.1 3.3 3 1 0 3 3 3 1 GMC oxidoreductase 3HCDH_N PF02737.13 gi|452207116|ref|YP_007487238.1| - 0.042 13.5 0.2 0.091 12.4 0.1 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Aldo_ket_red PF00248.16 gi|452207117|ref|YP_007487239.1| - 5.7e-62 209.1 0.0 7.1e-62 208.7 0.0 1.1 1 0 0 1 1 1 1 Aldo/keto reductase family Peptidase_M42 PF05343.9 gi|452207119|ref|YP_007487241.1| - 2.5e-85 285.7 0.2 2.9e-85 285.5 0.1 1.0 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.23 gi|452207119|ref|YP_007487241.1| - 2.3e-12 46.8 0.1 3e-12 46.4 0.1 1.2 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M28 PF04389.12 gi|452207119|ref|YP_007487241.1| - 0.00034 20.4 0.0 0.00065 19.4 0.0 1.5 1 0 0 1 1 1 1 Peptidase family M28 Peptidase_M18 PF02127.10 gi|452207119|ref|YP_007487241.1| - 0.087 11.3 0.0 0.17 10.3 0.0 1.5 1 0 0 1 1 1 0 Aminopeptidase I zinc metalloprotease (M18) NAD_kinase PF01513.16 gi|452207120|ref|YP_007487242.1| - 5.4e-14 51.6 0.0 8.4e-14 51.0 0.0 1.2 1 0 0 1 1 1 1 ATP-NAD kinase PAS_9 PF13426.1 gi|452207121|ref|YP_007487243.1| - 2e-26 92.3 0.1 5e-12 46.1 0.0 2.9 3 0 0 3 3 2 2 PAS domain HATPase_c PF02518.21 gi|452207121|ref|YP_007487243.1| - 1.6e-22 79.3 0.1 7e-22 77.2 0.0 2.1 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.19 gi|452207121|ref|YP_007487243.1| - 3.6e-20 71.8 0.1 2.7e-11 43.2 0.1 2.5 2 0 0 2 2 2 2 PAS fold PAS_8 PF13188.1 gi|452207121|ref|YP_007487243.1| - 4.4e-17 61.2 0.0 2.2e-07 30.4 0.0 2.8 2 0 0 2 2 2 2 PAS domain PAS_4 PF08448.5 gi|452207121|ref|YP_007487243.1| - 1e-16 60.9 5.6 8.6e-08 32.1 0.1 3.0 3 0 0 3 3 3 2 PAS fold Response_reg PF00072.19 gi|452207121|ref|YP_007487243.1| - 9.2e-14 51.4 0.1 2.5e-11 43.5 0.0 3.4 3 1 1 4 4 4 1 Response regulator receiver domain PAS_3 PF08447.6 gi|452207121|ref|YP_007487243.1| - 7.7e-09 35.5 0.1 3e-07 30.4 0.0 2.8 2 1 0 2 2 2 1 PAS fold HATPase_c_2 PF13581.1 gi|452207121|ref|YP_007487243.1| - 1e-05 25.2 2.7 2.8e-05 23.8 0.0 2.8 2 1 0 2 2 2 1 Histidine kinase-like ATPase domain HisKA PF00512.20 gi|452207121|ref|YP_007487243.1| - 7.9e-05 22.5 1.1 0.00028 20.8 0.7 2.0 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c_5 PF14501.1 gi|452207121|ref|YP_007487243.1| - 0.00029 20.4 0.0 0.00064 19.3 0.0 1.5 1 0 0 1 1 1 1 GHKL domain SPOB_a PF14689.1 gi|452207121|ref|YP_007487243.1| - 0.001 18.6 0.5 0.001 18.6 0.4 1.8 2 0 0 2 2 2 1 Sensor_kinase_SpoOB-type, alpha-helical domain OKR_DC_1_N PF03709.10 gi|452207121|ref|YP_007487243.1| - 0.0012 18.8 0.0 0.0055 16.7 0.0 2.2 2 0 0 2 2 1 1 Orn/Lys/Arg decarboxylase, N-terminal domain HATPase_c_3 PF13589.1 gi|452207121|ref|YP_007487243.1| - 0.0085 15.7 0.0 0.02 14.5 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_11 PF14598.1 gi|452207121|ref|YP_007487243.1| - 0.018 14.9 0.0 0.041 13.8 0.0 1.5 1 0 0 1 1 1 0 PAS domain Prenyltransf PF01255.14 gi|452207123|ref|YP_007487245.1| - 9.5e-73 244.0 0.0 1.2e-72 243.6 0.0 1.0 1 0 0 1 1 1 1 Putative undecaprenyl diphosphate synthase AP_endonuc_2 PF01261.19 gi|452207123|ref|YP_007487245.1| - 0.045 13.0 1.3 0.066 12.4 0.4 1.7 2 0 0 2 2 2 0 Xylose isomerase-like TIM barrel UPF0104 PF03706.8 gi|452207124|ref|YP_007487246.1| - 1.7e-21 76.7 28.8 2.4e-21 76.3 19.9 1.2 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0104) Got1 PF04178.7 gi|452207124|ref|YP_007487246.1| - 0.019 15.0 1.9 0.019 15.0 1.3 3.1 2 1 2 4 4 4 0 Got1/Sft2-like family Prenyltransf PF01255.14 gi|452207125|ref|YP_007487247.1| - 1.3e-30 106.1 0.0 6.5e-29 100.6 0.0 2.0 2 0 0 2 2 2 2 Putative undecaprenyl diphosphate synthase DUF92 PF01940.11 gi|452207126|ref|YP_007487248.1| - 4.7e-58 196.0 22.3 4.7e-58 196.0 15.5 3.2 2 1 1 3 3 3 1 Integral membrane protein DUF92 Acetyltransf_10 PF13673.1 gi|452207127|ref|YP_007487249.1| - 5.8e-10 39.3 0.0 7.1e-10 39.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|452207127|ref|YP_007487249.1| - 3.5e-07 30.1 0.0 6.8e-07 29.2 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|452207127|ref|YP_007487249.1| - 7.9e-07 29.1 0.0 1.2e-06 28.5 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|452207127|ref|YP_007487249.1| - 6.7e-06 25.7 0.0 1e-05 25.1 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_8 PF13523.1 gi|452207127|ref|YP_007487249.1| - 2e-05 24.5 0.1 0.00013 21.8 0.0 1.9 1 1 1 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|452207127|ref|YP_007487249.1| - 0.0066 16.4 0.0 0.0084 16.0 0.0 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|452207127|ref|YP_007487249.1| - 0.042 13.6 0.0 0.16 11.8 0.0 2.0 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Toprim_4 PF13662.1 gi|452207128|ref|YP_007487250.1| - 3.1e-12 46.3 0.4 4.7e-11 42.5 0.1 2.8 2 1 0 2 2 2 1 Toprim domain Toprim PF01751.17 gi|452207128|ref|YP_007487250.1| - 3e-05 23.9 0.2 0.0001 22.2 0.0 1.9 2 0 0 2 2 2 1 Toprim domain Toprim_2 PF13155.1 gi|452207128|ref|YP_007487250.1| - 0.0017 18.6 0.0 0.0034 17.6 0.0 1.5 1 0 0 1 1 1 1 Toprim-like PspA_IM30 PF04012.7 gi|452207129|ref|YP_007487251.1| - 2e-31 109.0 32.7 2.6e-31 108.7 22.7 1.1 1 0 0 1 1 1 1 PspA/IM30 family AAA_13 PF13166.1 gi|452207129|ref|YP_007487251.1| - 0.00092 17.8 18.3 0.0012 17.4 12.7 1.1 1 0 0 1 1 1 1 AAA domain Snf7 PF03357.16 gi|452207129|ref|YP_007487251.1| - 0.00099 18.5 19.1 0.00099 18.5 13.3 3.5 2 1 1 3 3 2 2 Snf7 Osmo_CC PF08946.5 gi|452207129|ref|YP_007487251.1| - 0.042 13.8 0.7 0.042 13.8 0.5 4.6 2 1 3 5 5 5 0 Osmosensory transporter coiled coil TNV_CP PF03898.8 gi|452207129|ref|YP_007487251.1| - 0.045 12.8 2.2 0.077 12.0 1.6 1.3 1 0 0 1 1 1 0 Satellite tobacco necrosis virus coat protein DUF972 PF06156.8 gi|452207129|ref|YP_007487251.1| - 0.056 13.7 24.2 0.99 9.7 4.6 3.2 1 1 2 3 3 3 0 Protein of unknown function (DUF972) IncA PF04156.9 gi|452207129|ref|YP_007487251.1| - 0.14 11.7 31.9 0.17 11.4 3.2 2.8 1 1 1 2 2 2 0 IncA protein Spc7 PF08317.6 gi|452207129|ref|YP_007487251.1| - 0.14 10.8 27.0 0.025 13.2 14.6 2.0 1 1 1 2 2 2 0 Spc7 kinetochore protein DUF3584 PF12128.3 gi|452207129|ref|YP_007487251.1| - 0.16 9.2 29.1 0.21 8.9 20.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) ADIP PF11559.3 gi|452207129|ref|YP_007487251.1| - 0.57 10.0 30.1 5.7 6.8 8.2 3.2 1 1 2 3 3 3 0 Afadin- and alpha -actinin-Binding TPR_MLP1_2 PF07926.7 gi|452207129|ref|YP_007487251.1| - 0.61 9.8 31.0 3.2 7.5 15.6 2.5 1 1 1 2 2 2 0 TPR/MLP1/MLP2-like protein CCDC155 PF14662.1 gi|452207129|ref|YP_007487251.1| - 1.2 8.6 31.5 0.95 9.0 19.8 2.1 1 1 1 2 2 2 0 Coiled-coil region of CCDC155 DUF2217 PF10265.4 gi|452207129|ref|YP_007487251.1| - 1.3 7.6 15.3 1.6 7.3 10.6 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2217) DivIC PF04977.10 gi|452207129|ref|YP_007487251.1| - 1.3 8.5 32.1 0.3 10.5 3.7 4.3 2 1 0 4 4 4 0 Septum formation initiator V_ATPase_I PF01496.14 gi|452207129|ref|YP_007487251.1| - 1.5 6.5 21.3 3.3 5.4 14.4 1.7 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family ERM PF00769.14 gi|452207129|ref|YP_007487251.1| - 2.9 7.3 46.7 0.014 14.9 25.8 1.7 2 0 0 2 2 2 0 Ezrin/radixin/moesin family Filament PF00038.16 gi|452207129|ref|YP_007487251.1| - 3.2 7.1 34.9 0.84 9.0 16.1 2.7 1 1 1 2 2 2 0 Intermediate filament protein DUF4200 PF13863.1 gi|452207129|ref|YP_007487251.1| - 3.5 7.6 36.0 0.8 9.6 13.7 3.7 1 1 2 3 3 3 0 Domain of unknown function (DUF4200) WXG100 PF06013.7 gi|452207129|ref|YP_007487251.1| - 3.5 7.7 15.5 2.7 8.0 3.4 3.6 2 1 1 3 3 3 0 Proteins of 100 residues with WXG STAT_alpha PF01017.15 gi|452207129|ref|YP_007487251.1| - 5.4 6.6 18.6 8.5 6.0 4.8 2.6 1 1 2 3 3 3 0 STAT protein, all-alpha domain DUF342 PF03961.8 gi|452207129|ref|YP_007487251.1| - 5.5 5.2 22.0 0.57 8.5 9.0 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF342) FliD_N PF02465.13 gi|452207129|ref|YP_007487251.1| - 5.5 7.4 11.2 24 5.3 5.2 3.1 1 1 1 2 2 2 0 Flagellar hook-associated protein 2 N-terminus DUF4615 PF15393.1 gi|452207129|ref|YP_007487251.1| - 6 7.1 13.4 0.54 10.5 5.1 2.1 1 1 0 2 2 2 0 Domain of unknown function (DUF4615) DUF4613 PF15390.1 gi|452207129|ref|YP_007487251.1| - 9 4.3 11.9 5 5.1 6.8 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4613) GAS PF13851.1 gi|452207129|ref|YP_007487251.1| - 9.6 5.3 30.8 8.8 5.4 16.5 2.8 1 1 2 3 3 3 0 Growth-arrest specific micro-tubule binding DUF3450 PF11932.3 gi|452207129|ref|YP_007487251.1| - 10 5.3 25.7 28 3.8 7.7 2.8 1 1 2 3 3 3 0 Protein of unknown function (DUF3450) Ribosomal_L44 PF00935.14 gi|452207131|ref|YP_007487253.1| - 4.8e-26 90.5 2.9 6e-26 90.2 2.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L44 DZR PF12773.2 gi|452207131|ref|YP_007487253.1| - 0.0051 16.5 1.4 0.014 15.2 0.9 1.7 1 1 0 1 1 1 1 Double zinc ribbon DUF2296 PF10058.4 gi|452207131|ref|YP_007487253.1| - 0.01 15.5 1.4 2 8.2 0.0 2.2 2 0 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) zf-ribbon_3 PF13248.1 gi|452207131|ref|YP_007487253.1| - 0.011 14.9 0.8 2 7.7 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|452207131|ref|YP_007487253.1| - 0.02 14.4 1.3 0.91 9.1 0.0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|452207131|ref|YP_007487253.1| - 0.029 14.0 1.3 0.85 9.3 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Terminase_GpA PF05876.7 gi|452207131|ref|YP_007487253.1| - 0.03 12.7 0.3 0.037 12.3 0.2 1.2 1 0 0 1 1 1 0 Phage terminase large subunit (GpA) zinc_ribbon_2 PF13240.1 gi|452207131|ref|YP_007487253.1| - 0.049 13.1 5.5 1 8.9 1.3 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|452207131|ref|YP_007487253.1| - 0.051 13.4 3.0 1.8 8.4 0.2 2.3 2 0 0 2 2 2 0 Transposase zinc-ribbon domain DUF3133 PF11331.3 gi|452207131|ref|YP_007487253.1| - 0.059 12.9 1.0 0.1 12.2 0.1 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3133) Zn-ribbon_8 PF09723.5 gi|452207131|ref|YP_007487253.1| - 0.076 12.9 2.3 6.4 6.8 0.2 2.3 2 0 0 2 2 2 0 Zinc ribbon domain Cytochrome_CBB3 PF13442.1 gi|452207131|ref|YP_007487253.1| - 0.12 12.5 0.1 0.17 12.0 0.1 1.4 1 0 0 1 1 1 0 Cytochrome C oxidase, cbb3-type, subunit III Lar_restr_allev PF14354.1 gi|452207131|ref|YP_007487253.1| - 0.18 12.1 1.4 0.83 10.0 1.0 1.8 1 1 0 1 1 1 0 Restriction alleviation protein Lar zf-ISL3 PF14690.1 gi|452207131|ref|YP_007487253.1| - 0.19 11.7 3.7 6.6 6.8 0.3 2.4 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Ribosomal_S27e PF01667.12 gi|452207132|ref|YP_007487254.1| - 8.5e-21 73.2 0.3 8.9e-21 73.1 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein S27 Zn-ribbon_8 PF09723.5 gi|452207132|ref|YP_007487254.1| - 0.0063 16.4 1.0 0.0098 15.8 0.7 1.2 1 0 0 1 1 1 1 Zinc ribbon domain HypA PF01155.14 gi|452207132|ref|YP_007487254.1| - 0.012 15.2 0.5 0.014 15.0 0.3 1.2 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Zn_Tnp_IS91 PF14319.1 gi|452207132|ref|YP_007487254.1| - 0.031 13.7 0.1 0.031 13.7 0.1 1.1 1 0 0 1 1 1 0 Transposase zinc-binding domain zinc_ribbon_6 PF14599.1 gi|452207132|ref|YP_007487254.1| - 0.033 13.9 0.3 0.043 13.6 0.2 1.3 1 0 0 1 1 1 0 Zinc-ribbon C1_1 PF00130.17 gi|452207132|ref|YP_007487254.1| - 0.11 12.2 0.3 0.16 11.7 0.2 1.3 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) GCC2_GCC3 PF07699.8 gi|452207132|ref|YP_007487254.1| - 0.14 11.7 0.3 0.2 11.2 0.2 1.3 1 1 0 1 1 1 0 GCC2 and GCC3 A2L_zn_ribbon PF08792.5 gi|452207132|ref|YP_007487254.1| - 0.45 10.0 2.3 3 7.4 1.6 1.9 1 1 0 1 1 1 0 A2L zinc ribbon domain EIF_2_alpha PF07541.7 gi|452207133|ref|YP_007487255.1| - 5.9e-26 90.4 0.0 1.1e-25 89.5 0.0 1.4 1 0 0 1 1 1 1 Eukaryotic translation initiation factor 2 alpha subunit S1 PF00575.18 gi|452207133|ref|YP_007487255.1| - 6.3e-13 48.6 0.9 1.2e-12 47.6 0.6 1.5 1 0 0 1 1 1 1 S1 RNA binding domain WI12 PF07107.6 gi|452207133|ref|YP_007487255.1| - 0.059 13.2 0.1 0.11 12.4 0.1 1.4 1 0 0 1 1 1 0 Wound-induced protein WI12 PP2 PF14299.1 gi|452207133|ref|YP_007487255.1| - 0.16 11.3 0.4 0.31 10.4 0.3 1.5 1 1 0 1 1 1 0 Phloem protein 2 Nop10p PF04135.7 gi|452207134|ref|YP_007487256.1| - 7.7e-21 73.5 1.5 8.6e-21 73.4 1.0 1.0 1 0 0 1 1 1 1 Nucleolar RNA-binding protein, Nop10p family DNA_ligase_ZBD PF03119.11 gi|452207134|ref|YP_007487256.1| - 0.0076 15.9 1.4 0.017 14.8 1.0 1.6 1 0 0 1 1 1 1 NAD-dependent DNA ligase C4 zinc finger domain Ogr_Delta PF04606.7 gi|452207134|ref|YP_007487256.1| - 0.17 11.5 0.7 0.33 10.6 0.5 1.4 1 0 0 1 1 1 0 Ogr/Delta-like zinc finger Nudix_N_2 PF14803.1 gi|452207134|ref|YP_007487256.1| - 0.21 11.2 0.2 0.21 11.2 0.2 1.7 2 0 0 2 2 2 0 Nudix N-terminal PAC2 PF09754.4 gi|452207135|ref|YP_007487257.1| - 2e-53 181.5 0.2 2.2e-53 181.3 0.1 1.0 1 0 0 1 1 1 1 PAC2 family THDPS_N_2 PF14805.1 gi|452207137|ref|YP_007487259.1| - 5.5e-16 58.1 0.2 8e-16 57.6 0.1 1.3 1 0 0 1 1 1 1 Tetrahydrodipicolinate N-succinyltransferase N-terminal Hexapep PF00132.19 gi|452207137|ref|YP_007487259.1| - 1.3e-11 43.4 6.4 5.2e-05 22.5 0.1 3.4 2 1 0 3 3 3 2 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|452207137|ref|YP_007487259.1| - 6.6e-06 25.5 12.0 5.5e-05 22.6 0.5 3.0 3 1 0 3 3 3 2 Hexapeptide repeat of succinyl-transferase PEP_mutase PF13714.1 gi|452207138|ref|YP_007487260.1| - 5e-45 153.5 0.1 7e-45 153.0 0.1 1.1 1 0 0 1 1 1 1 Phosphoenolpyruvate phosphomutase ICL PF00463.16 gi|452207138|ref|YP_007487260.1| - 1.2e-35 122.7 1.1 7.6e-18 64.0 0.5 2.3 2 1 1 3 3 3 2 Isocitrate lyase family HpcH_HpaI PF03328.9 gi|452207139|ref|YP_007487261.1| - 1.3e-10 40.5 0.0 4.4e-10 38.8 0.0 1.9 1 1 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family Ham1p_like PF01725.11 gi|452207140|ref|YP_007487262.1| - 1.6e-42 145.0 0.0 4.6e-42 143.5 0.0 1.6 1 1 0 1 1 1 1 Ham1 family PIN_3 PF13470.1 gi|452207141|ref|YP_007487263.1| - 3.5e-07 30.9 3.6 9.4e-07 29.5 2.5 1.7 2 0 0 2 2 2 1 PIN domain Sulfate_transp PF00916.15 gi|452207143|ref|YP_007487265.1| - 2.4e-06 26.7 12.4 5.3e-06 25.6 8.6 1.5 1 1 0 1 1 1 1 Sulfate transporter family HTH_23 PF13384.1 gi|452207144|ref|YP_007487266.1| - 6e-06 25.7 0.1 4.9e-05 22.8 0.0 2.1 2 0 0 2 2 2 1 Homeodomain-like domain TFIIB PF00382.14 gi|452207144|ref|YP_007487266.1| - 4e-05 23.3 0.4 0.00018 21.2 0.1 2.1 1 1 1 2 2 2 1 Transcription factor TFIIB repeat HTH_AsnC-type PF13404.1 gi|452207144|ref|YP_007487266.1| - 0.00016 21.0 0.7 0.0053 16.2 0.1 2.3 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_28 PF13518.1 gi|452207144|ref|YP_007487266.1| - 0.00041 20.2 0.0 0.0035 17.3 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain Sigma70_r4 PF04545.11 gi|452207144|ref|YP_007487266.1| - 0.038 13.3 0.0 0.5 9.7 0.0 2.1 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_24 PF13412.1 gi|452207144|ref|YP_007487266.1| - 0.07 12.5 0.0 0.92 8.9 0.0 2.1 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_3 PF01381.17 gi|452207144|ref|YP_007487266.1| - 0.07 12.9 0.2 0.44 10.4 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix HTH_Tnp_ISL3 PF13542.1 gi|452207144|ref|YP_007487266.1| - 0.091 11.9 0.3 0.66 9.2 0.1 2.2 3 0 0 3 3 3 0 Helix-turn-helix domain of transposase family ISL3 HTH_8 PF02954.14 gi|452207144|ref|YP_007487266.1| - 0.093 12.2 0.1 14 5.3 0.0 2.3 2 0 0 2 2 2 0 Bacterial regulatory protein, Fis family HTH_30 PF13556.1 gi|452207144|ref|YP_007487266.1| - 0.12 11.9 0.0 1.2 8.7 0.0 2.2 2 0 0 2 2 2 0 PucR C-terminal helix-turn-helix domain HTH_31 PF13560.1 gi|452207144|ref|YP_007487266.1| - 0.19 11.9 4.7 1.8 8.8 3.0 2.3 1 1 0 1 1 1 0 Helix-turn-helix domain STT3 PF02516.9 gi|452207145|ref|YP_007487267.1| - 2.4e-25 89.4 10.0 4.4e-25 88.6 6.9 1.4 1 1 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit TauE PF01925.14 gi|452207145|ref|YP_007487267.1| - 0.092 12.1 43.8 0.014 14.8 3.8 3.4 2 1 1 3 3 3 0 Sulfite exporter TauE/SafE DUF368 PF04018.8 gi|452207146|ref|YP_007487268.1| - 2.6e-65 220.1 13.0 3.1e-65 219.9 9.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF368) Rhomboid PF01694.17 gi|452207147|ref|YP_007487269.1| - 7.5e-19 68.2 14.6 1.2e-18 67.5 10.1 1.3 1 0 0 1 1 1 1 Rhomboid family RNase_P_p30 PF01876.11 gi|452207148|ref|YP_007487270.1| - 5.5e-28 97.0 0.0 6.7e-28 96.8 0.0 1.1 1 0 0 1 1 1 1 RNase P subunit p30 PHP PF02811.14 gi|452207148|ref|YP_007487270.1| - 5.9e-05 22.9 0.0 8.6e-05 22.3 0.0 1.3 1 1 0 1 1 1 1 PHP domain DUF2623 PF11115.3 gi|452207148|ref|YP_007487270.1| - 0.094 12.6 0.0 0.21 11.5 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2623) DUF3943 PF13084.1 gi|452207150|ref|YP_007487272.1| - 0.016 14.7 0.0 0.027 14.0 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3943) DUF2798 PF11391.3 gi|452207150|ref|YP_007487272.1| - 0.023 14.4 8.7 0.15 11.8 1.2 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2798) ABC2_membrane_4 PF12730.2 gi|452207150|ref|YP_007487272.1| - 7.9 5.5 16.0 0.57 9.3 6.9 1.8 1 1 1 2 2 2 0 ABC-2 family transporter protein E1-E2_ATPase PF00122.15 gi|452207151|ref|YP_007487273.1| - 1.1e-11 44.1 2.7 1.7e-11 43.6 1.9 1.2 1 0 0 1 1 1 1 E1-E2 ATPase CHASE3 PF05227.8 gi|452207151|ref|YP_007487273.1| - 0.046 13.4 0.5 0.1 12.2 0.4 1.6 1 0 0 1 1 1 0 CHASE3 domain Flavi_glycop_C PF02832.11 gi|452207151|ref|YP_007487273.1| - 0.14 12.0 0.1 0.29 11.0 0.1 1.4 1 0 0 1 1 1 0 Flavivirus glycoprotein, immunoglobulin-like domain RNase_P_Rpp14 PF01900.14 gi|452207152|ref|YP_007487274.1| - 1e-21 76.8 0.0 1.2e-21 76.5 0.0 1.1 1 0 0 1 1 1 1 Rpp14/Pop5 family Proteasome PF00227.21 gi|452207153|ref|YP_007487275.1| - 4.9e-56 189.0 0.0 6.1e-56 188.7 0.0 1.1 1 0 0 1 1 1 1 Proteasome subunit Proteasome_A_N PF10584.4 gi|452207153|ref|YP_007487275.1| - 2.4e-14 52.3 0.1 4.3e-14 51.4 0.1 1.5 1 0 0 1 1 1 1 Proteasome subunit A N-terminal signature SBDS PF01172.13 gi|452207154|ref|YP_007487276.1| - 2.5e-23 81.6 0.0 4.1e-23 80.9 0.0 1.4 1 0 0 1 1 1 1 Shwachman-Bodian-Diamond syndrome (SBDS) protein SBDS_C PF09377.5 gi|452207154|ref|YP_007487276.1| - 6.2e-18 64.7 0.0 9.1e-18 64.1 0.0 1.3 1 0 0 1 1 1 1 SBDS protein C-terminal domain ADH_zinc_N_2 PF13602.1 gi|452207155|ref|YP_007487277.1| - 1.4e-15 58.2 1.3 1.4e-15 58.2 0.9 1.8 2 0 0 2 2 2 1 Zinc-binding dehydrogenase ADH_N PF08240.7 gi|452207155|ref|YP_007487277.1| - 2.2e-13 49.9 0.2 1.4e-11 44.1 0.0 2.3 1 1 1 2 2 2 2 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|452207155|ref|YP_007487277.1| - 6.1e-11 41.9 2.3 1.1e-10 41.1 1.6 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase DZR PF12773.2 gi|452207156|ref|YP_007487278.1| - 0.0072 16.1 0.4 0.01 15.6 0.3 1.3 1 0 0 1 1 1 1 Double zinc ribbon FYVE PF01363.16 gi|452207156|ref|YP_007487278.1| - 0.035 14.0 0.6 0.061 13.2 0.4 1.6 1 1 0 1 1 1 0 FYVE zinc finger DNA_RNApol_7kD PF03604.8 gi|452207156|ref|YP_007487278.1| - 0.036 13.5 2.4 0.076 12.4 1.7 1.5 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit Zn-ribbon_8 PF09723.5 gi|452207156|ref|YP_007487278.1| - 0.037 13.9 4.1 1.3 8.9 3.3 2.2 1 1 1 2 2 2 0 Zinc ribbon domain Nudix_N_2 PF14803.1 gi|452207156|ref|YP_007487278.1| - 0.069 12.8 1.9 4.4 7.0 0.1 2.5 2 0 0 2 2 2 0 Nudix N-terminal DUF1610 PF07754.6 gi|452207156|ref|YP_007487278.1| - 0.078 13.1 1.2 9.9 6.3 0.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) GFA PF04828.9 gi|452207156|ref|YP_007487278.1| - 0.085 12.8 1.8 0.55 10.2 1.3 2.0 1 1 0 1 1 1 0 Glutathione-dependent formaldehyde-activating enzyme zf-ribbon_3 PF13248.1 gi|452207156|ref|YP_007487278.1| - 0.9 8.8 3.4 3 7.1 2.4 1.8 1 1 0 1 1 1 0 zinc-ribbon domain zf-HIT PF04438.11 gi|452207156|ref|YP_007487278.1| - 2.2 7.9 5.0 2.4 7.8 0.3 2.1 2 0 0 2 2 2 0 HIT zinc finger DUF35_N PF12172.3 gi|452207156|ref|YP_007487278.1| - 2.7 8.0 5.2 2.4 8.1 0.4 2.1 1 1 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) ABC_tran PF00005.22 gi|452207157|ref|YP_007487279.1| - 1e-27 97.0 0.0 1.5e-27 96.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|452207157|ref|YP_007487279.1| - 4.8e-17 62.8 0.0 8.3e-09 35.8 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_23 PF13476.1 gi|452207157|ref|YP_007487279.1| - 3.9e-05 24.0 0.0 4.9e-05 23.7 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|452207157|ref|YP_007487279.1| - 5.1e-05 22.7 0.4 9.4e-05 21.8 0.3 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_19 PF13245.1 gi|452207157|ref|YP_007487279.1| - 0.0052 16.5 0.1 0.016 14.9 0.0 1.9 2 0 0 2 2 2 1 Part of AAA domain AAA_30 PF13604.1 gi|452207157|ref|YP_007487279.1| - 0.0069 15.9 0.2 0.017 14.7 0.1 1.7 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|452207157|ref|YP_007487279.1| - 0.0093 16.2 0.7 0.5 10.6 0.5 2.3 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|452207157|ref|YP_007487279.1| - 0.011 15.5 0.6 0.28 11.0 0.4 2.3 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|452207157|ref|YP_007487279.1| - 0.057 13.5 0.1 0.16 12.0 0.0 1.9 2 1 0 2 2 2 0 AAA domain SMC_N PF02463.14 gi|452207157|ref|YP_007487279.1| - 0.057 12.6 0.4 0.15 11.2 0.2 1.6 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|452207157|ref|YP_007487279.1| - 0.075 13.0 0.2 0.18 11.7 0.1 1.8 1 1 0 1 1 1 0 AAA ATPase domain AAA_10 PF12846.2 gi|452207157|ref|YP_007487279.1| - 0.087 12.2 0.7 1.6 8.1 0.2 2.4 1 1 2 3 3 3 0 AAA-like domain AAA_17 PF13207.1 gi|452207157|ref|YP_007487279.1| - 0.1 13.4 4.7 0.93 10.3 3.3 2.6 1 1 0 1 1 1 0 AAA domain AAA PF00004.24 gi|452207157|ref|YP_007487279.1| - 0.18 11.9 0.3 0.31 11.2 0.2 1.6 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) ABC2_membrane_3 PF12698.2 gi|452207158|ref|YP_007487280.1| - 8.4e-10 38.1 0.4 8.4e-10 38.1 0.3 1.9 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|452207158|ref|YP_007487280.1| - 4.4e-08 32.3 2.2 4.4e-08 32.3 1.5 3.0 4 1 0 4 4 4 1 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|452207158|ref|YP_007487280.1| - 0.00076 18.6 10.7 0.00076 18.6 7.4 2.5 3 0 0 3 3 3 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|452207159|ref|YP_007487281.1| - 1.6e-13 50.4 0.0 2.1e-13 50.0 0.0 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|452207159|ref|YP_007487281.1| - 2.6e-09 36.3 4.2 3.9e-09 35.7 2.9 1.3 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|452207159|ref|YP_007487281.1| - 1.3e-05 24.4 0.0 2.3e-05 23.6 0.0 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein Aldo_ket_red PF00248.16 gi|452207160|ref|YP_007487282.1| - 3.6e-72 242.5 0.0 4.3e-72 242.3 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family Lipase_GDSL_2 PF13472.1 gi|452207160|ref|YP_007487282.1| - 0.016 15.3 0.1 3.1 7.9 0.0 3.1 1 1 1 2 2 2 0 GDSL-like Lipase/Acylhydrolase family RHH_1 PF01402.16 gi|452207160|ref|YP_007487282.1| - 0.028 14.2 0.5 0.15 12.0 0.1 2.5 2 0 0 2 2 2 0 Ribbon-helix-helix protein, copG family Pyridox_ox_2 PF12900.2 gi|452207161|ref|YP_007487283.1| - 2.4e-15 56.6 0.0 2.8e-15 56.4 0.0 1.0 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_oxidase PF01243.15 gi|452207161|ref|YP_007487283.1| - 5.3e-05 23.1 0.0 7.7e-05 22.6 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase DUF2071 PF09844.4 gi|452207162|ref|YP_007487284.1| - 1.3e-66 224.1 0.0 1.4e-66 223.9 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (COG2071) ADC PF06314.6 gi|452207162|ref|YP_007487284.1| - 0.00011 21.6 0.1 0.00019 20.8 0.0 1.4 1 1 1 2 2 2 1 Acetoacetate decarboxylase (ADC) bPH_2 PF03703.9 gi|452207163|ref|YP_007487285.1| - 6.1e-18 64.6 0.2 1.4e-17 63.4 0.1 1.6 2 0 0 2 2 2 1 Bacterial PH domain DUF4231 PF14015.1 gi|452207163|ref|YP_007487285.1| - 0.15 12.0 2.3 0.23 11.4 1.6 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF4231) DUF202 PF02656.10 gi|452207163|ref|YP_007487285.1| - 1.8 8.8 4.8 3.1 8.0 3.3 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF202) bPH_2 PF03703.9 gi|452207164|ref|YP_007487286.1| - 1.2e-48 162.9 1.1 3.3e-17 62.2 0.0 3.3 3 0 0 3 3 3 3 Bacterial PH domain zf-CDGSH PF09360.5 gi|452207165|ref|YP_007487287.1| - 1e-05 25.2 0.1 1.8e-05 24.4 0.1 1.5 1 0 0 1 1 1 1 Iron-binding zinc finger CDGSH type Hydrolase_6 PF13344.1 gi|452207166|ref|YP_007487288.1| - 8.6e-24 83.3 0.0 1.5e-23 82.5 0.0 1.4 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|452207166|ref|YP_007487288.1| - 9.5e-23 79.7 0.3 4.9e-22 77.4 0.1 2.1 2 0 0 2 2 2 1 HAD-hyrolase-like Hydrolase PF00702.21 gi|452207166|ref|YP_007487288.1| - 1.6e-10 41.8 0.1 2.1e-10 41.3 0.0 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|452207166|ref|YP_007487288.1| - 4.8e-09 36.6 0.0 2.3e-07 31.2 0.0 3.0 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|452207166|ref|YP_007487288.1| - 0.0083 15.7 0.0 0.25 10.8 0.0 2.1 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase PGP_phosphatase PF09419.5 gi|452207166|ref|YP_007487288.1| - 0.013 14.8 0.0 0.021 14.1 0.0 1.3 1 0 0 1 1 1 0 Mitochondrial PGP phosphatase TP6A_N PF04406.9 gi|452207167|ref|YP_007487289.1| - 3.1e-19 68.3 0.1 5e-19 67.7 0.0 1.3 1 0 0 1 1 1 1 Type IIB DNA topoisomerase Topo-VIb_trans PF09239.6 gi|452207168|ref|YP_007487290.1| - 1.7e-62 209.6 0.0 3.3e-62 208.7 0.0 1.5 1 0 0 1 1 1 1 Topoisomerase VI B subunit, transducer HATPase_c PF02518.21 gi|452207168|ref|YP_007487290.1| - 1.3e-13 50.6 0.0 1.9e-11 43.6 0.0 3.2 3 0 0 3 3 3 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.1 gi|452207168|ref|YP_007487290.1| - 2.6e-08 33.6 0.0 3.4e-05 23.5 0.0 2.6 2 0 0 2 2 2 2 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Intein_splicing PF14890.1 gi|452207168|ref|YP_007487290.1| - 0.00064 18.7 0.0 0.0023 16.8 0.0 2.0 1 1 0 1 1 1 1 Intein splicing domain HATPase_c_2 PF13581.1 gi|452207168|ref|YP_007487290.1| - 0.00098 18.9 0.0 0.026 14.2 0.0 2.8 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain Hint PF01079.15 gi|452207168|ref|YP_007487290.1| - 0.0069 15.6 0.1 0.013 14.7 0.0 1.3 1 0 0 1 1 1 1 Hint module E1-E2_ATPase PF00122.15 gi|452207168|ref|YP_007487290.1| - 0.17 10.9 0.0 0.59 9.1 0.0 1.9 2 0 0 2 2 2 0 E1-E2 ATPase DNA_gyraseB PF00204.20 gi|452207169|ref|YP_007487291.1| - 7.3e-59 197.8 0.0 1.2e-58 197.1 0.0 1.3 1 0 0 1 1 1 1 DNA gyrase B DNA_gyraseB_C PF00986.16 gi|452207169|ref|YP_007487291.1| - 5.3e-29 99.7 0.0 1.1e-28 98.7 0.0 1.5 1 0 0 1 1 1 1 DNA gyrase B subunit, carboxyl terminus Toprim PF01751.17 gi|452207169|ref|YP_007487291.1| - 1.1e-23 83.1 0.0 2.9e-23 81.7 0.0 1.8 2 0 0 2 2 2 1 Toprim domain HATPase_c PF02518.21 gi|452207169|ref|YP_007487291.1| - 4.4e-19 68.2 0.1 1.1e-18 66.9 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.1 gi|452207169|ref|YP_007487291.1| - 7e-05 22.5 0.0 0.00015 21.4 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF3238 PF11579.3 gi|452207169|ref|YP_007487291.1| - 0.076 12.6 0.1 0.53 9.8 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3238) DNA_topoisoIV PF00521.15 gi|452207170|ref|YP_007487292.1| - 1.7e-147 491.7 0.0 2.1e-147 491.4 0.0 1.1 1 0 0 1 1 1 1 DNA gyrase/topoisomerase IV, subunit A DNA_gyraseA_C PF03989.8 gi|452207170|ref|YP_007487292.1| - 3e-60 199.3 14.3 1.6e-10 40.0 0.0 6.5 6 0 0 6 6 6 6 DNA gyrase C-terminal domain, beta-propeller SUKH-3 PF14433.1 gi|452207170|ref|YP_007487292.1| - 0.053 13.3 0.1 0.85 9.4 0.0 2.5 2 0 0 2 2 2 0 SUKH-3 immunity protein CorA PF01544.13 gi|452207170|ref|YP_007487292.1| - 1.4 7.8 7.4 2.6 6.9 5.1 1.4 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein Glyoxalase_2 PF12681.2 gi|452207171|ref|YP_007487293.1| - 3.9e-17 62.8 0.5 4.5e-17 62.6 0.4 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase PF00903.20 gi|452207171|ref|YP_007487293.1| - 1.8e-16 60.2 0.2 2.1e-16 60.0 0.1 1.0 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.1 gi|452207171|ref|YP_007487293.1| - 4.1e-11 42.8 0.6 1.7e-09 37.6 0.4 2.0 1 1 1 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.1 gi|452207171|ref|YP_007487293.1| - 0.00011 22.1 0.1 0.0016 18.3 0.1 2.0 1 1 0 1 1 1 1 Glyoxalase-like domain AAA PF00004.24 gi|452207172|ref|YP_007487294.1| - 3.5e-100 331.3 0.0 3.3e-49 166.4 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.13 gi|452207172|ref|YP_007487294.1| - 2.4e-29 101.0 0.0 1.7e-28 98.3 0.1 2.4 3 0 0 3 3 1 1 Cell division protein 48 (CDC48), N-terminal domain CDC48_2 PF02933.12 gi|452207172|ref|YP_007487294.1| - 9.5e-15 53.9 0.0 4.4e-14 51.8 0.0 2.2 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), domain 2 RuvB_N PF05496.7 gi|452207172|ref|YP_007487294.1| - 1.1e-14 54.0 0.0 6.3e-07 28.6 0.0 2.5 2 0 0 2 2 2 2 Holliday junction DNA helicase ruvB N-terminus AAA_16 PF13191.1 gi|452207172|ref|YP_007487294.1| - 1.6e-14 54.3 0.3 4.8e-07 29.9 0.0 3.4 3 1 0 3 3 2 2 AAA ATPase domain AAA_5 PF07728.9 gi|452207172|ref|YP_007487294.1| - 8.3e-14 51.4 1.4 9.2e-06 25.4 0.0 4.0 3 2 0 3 3 2 2 AAA domain (dynein-related subfamily) AAA_22 PF13401.1 gi|452207172|ref|YP_007487294.1| - 1.9e-13 50.6 0.3 0.00042 20.4 0.1 4.3 2 2 0 2 2 2 2 AAA domain AAA_17 PF13207.1 gi|452207172|ref|YP_007487294.1| - 1e-12 48.9 0.2 0.00012 22.8 0.0 3.3 3 2 0 3 3 2 2 AAA domain AAA_2 PF07724.9 gi|452207172|ref|YP_007487294.1| - 2e-12 47.3 0.0 1.5e-05 24.9 0.0 2.6 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_33 PF13671.1 gi|452207172|ref|YP_007487294.1| - 4.4e-11 42.8 0.0 3e-05 23.9 0.0 2.6 2 0 0 2 2 2 2 AAA domain TIP49 PF06068.8 gi|452207172|ref|YP_007487294.1| - 5.2e-11 41.9 0.0 0.00013 20.8 0.0 3.0 3 0 0 3 3 3 2 TIP49 C-terminus AAA_14 PF13173.1 gi|452207172|ref|YP_007487294.1| - 3.6e-09 36.5 0.0 0.002 18.0 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_19 PF13245.1 gi|452207172|ref|YP_007487294.1| - 1.3e-08 34.4 4.2 0.0012 18.5 0.1 2.9 3 0 0 3 3 2 2 Part of AAA domain IstB_IS21 PF01695.12 gi|452207172|ref|YP_007487294.1| - 1.6e-08 34.1 0.0 0.0057 16.0 0.0 2.4 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_18 PF13238.1 gi|452207172|ref|YP_007487294.1| - 5e-08 33.3 0.0 0.007 16.6 0.0 2.9 2 0 0 2 2 2 2 AAA domain AAA_25 PF13481.1 gi|452207172|ref|YP_007487294.1| - 1.5e-07 31.0 7.4 0.59 9.4 0.1 4.7 3 2 2 5 5 4 3 AAA domain Zeta_toxin PF06414.7 gi|452207172|ref|YP_007487294.1| - 2.7e-07 29.9 0.0 0.026 13.6 0.0 2.8 2 0 0 2 2 2 2 Zeta toxin RNA_helicase PF00910.17 gi|452207172|ref|YP_007487294.1| - 8.4e-07 29.1 0.0 0.047 13.8 0.0 2.7 2 0 0 2 2 2 2 RNA helicase AAA_28 PF13521.1 gi|452207172|ref|YP_007487294.1| - 8.8e-07 29.0 0.0 0.014 15.3 0.0 2.7 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.16 gi|452207172|ref|YP_007487294.1| - 1e-06 28.0 0.1 0.042 12.9 0.0 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.21 gi|452207172|ref|YP_007487294.1| - 2.3e-06 27.1 0.1 0.07 12.6 0.0 3.3 3 1 0 3 3 3 2 Sigma-54 interaction domain NB-ARC PF00931.17 gi|452207172|ref|YP_007487294.1| - 5.6e-06 25.4 0.0 0.036 12.9 0.0 2.2 2 0 0 2 2 2 2 NB-ARC domain PhoH PF02562.11 gi|452207172|ref|YP_007487294.1| - 8.7e-06 25.1 0.6 0.16 11.1 0.0 3.3 3 0 0 3 3 3 2 PhoH-like protein AAA_3 PF07726.6 gi|452207172|ref|YP_007487294.1| - 1.1e-05 25.0 0.0 0.17 11.5 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) ABC_tran PF00005.22 gi|452207172|ref|YP_007487294.1| - 1.1e-05 25.7 0.0 0.22 11.7 0.0 2.8 2 0 0 2 2 2 2 ABC transporter Arch_ATPase PF01637.13 gi|452207172|ref|YP_007487294.1| - 1.3e-05 25.0 0.0 0.065 12.9 0.0 3.5 2 2 1 3 3 3 1 Archaeal ATPase KaiC PF06745.8 gi|452207172|ref|YP_007487294.1| - 1.4e-05 24.2 0.5 0.42 9.7 0.0 3.5 2 1 0 3 3 3 2 KaiC Sigma54_activ_2 PF14532.1 gi|452207172|ref|YP_007487294.1| - 2.4e-05 24.3 0.0 0.29 11.1 0.0 2.4 2 0 0 2 2 2 2 Sigma-54 interaction domain DUF815 PF05673.8 gi|452207172|ref|YP_007487294.1| - 3.2e-05 22.9 0.0 0.19 10.6 0.0 2.3 2 0 0 2 2 2 2 Protein of unknown function (DUF815) AAA_24 PF13479.1 gi|452207172|ref|YP_007487294.1| - 4.3e-05 23.1 0.1 0.12 11.9 0.0 2.6 2 0 0 2 2 2 2 AAA domain SKI PF01202.17 gi|452207172|ref|YP_007487294.1| - 5.3e-05 23.1 0.0 0.28 11.0 0.0 2.5 2 0 0 2 2 2 2 Shikimate kinase DUF2075 PF09848.4 gi|452207172|ref|YP_007487294.1| - 6e-05 22.1 0.0 0.25 10.2 0.0 2.3 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) NACHT PF05729.7 gi|452207172|ref|YP_007487294.1| - 9.6e-05 22.0 0.1 0.26 10.9 0.0 3.4 4 0 0 4 4 3 1 NACHT domain Parvo_NS1 PF01057.12 gi|452207172|ref|YP_007487294.1| - 0.00016 20.6 0.1 0.2 10.4 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 AAA_11 PF13086.1 gi|452207172|ref|YP_007487294.1| - 0.00027 20.5 0.0 0.37 10.3 0.0 2.4 2 0 0 2 2 2 2 AAA domain NTPase_1 PF03266.10 gi|452207172|ref|YP_007487294.1| - 0.0003 20.5 0.4 1.8 8.2 0.0 3.4 2 1 1 3 3 3 2 NTPase AAA_30 PF13604.1 gi|452207172|ref|YP_007487294.1| - 0.00033 20.3 0.0 0.88 9.1 0.0 2.8 2 0 0 2 2 2 2 AAA domain Bac_DnaA PF00308.13 gi|452207172|ref|YP_007487294.1| - 0.0026 17.4 0.0 1.8 8.1 0.0 2.7 3 0 0 3 3 2 1 Bacterial dnaA protein ResIII PF04851.10 gi|452207172|ref|YP_007487294.1| - 0.0031 17.3 0.0 3.3 7.5 0.0 2.4 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit UPF0079 PF02367.12 gi|452207172|ref|YP_007487294.1| - 0.0038 16.8 0.1 1.6 8.3 0.0 2.4 2 0 0 2 2 2 1 Uncharacterised P-loop hydrolase UPF0079 IPT PF01745.11 gi|452207172|ref|YP_007487294.1| - 0.0039 16.4 1.0 1.1 8.3 0.0 2.8 3 0 0 3 3 3 1 Isopentenyl transferase KAP_NTPase PF07693.9 gi|452207172|ref|YP_007487294.1| - 0.0059 15.6 0.1 2.5 6.9 0.0 3.4 2 2 1 4 4 4 1 KAP family P-loop domain ATP-synt_ab PF00006.20 gi|452207172|ref|YP_007487294.1| - 0.0071 15.8 0.0 2.1 7.8 0.0 2.3 2 0 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain Cytidylate_kin2 PF13189.1 gi|452207172|ref|YP_007487294.1| - 0.009 15.9 0.0 2.1 8.1 0.0 2.4 2 0 0 2 2 2 1 Cytidylate kinase-like family Viral_helicase1 PF01443.13 gi|452207172|ref|YP_007487294.1| - 0.019 14.4 0.0 1.7 8.1 0.0 2.2 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase CPT PF07931.7 gi|452207172|ref|YP_007487294.1| - 0.023 14.3 0.0 3.4 7.2 0.0 2.5 2 1 0 2 2 2 0 Chloramphenicol phosphotransferase-like protein Torsin PF06309.6 gi|452207172|ref|YP_007487294.1| - 0.026 14.4 0.0 3.8 7.4 0.0 2.4 2 0 0 2 2 2 0 Torsin T2SE PF00437.15 gi|452207172|ref|YP_007487294.1| - 0.033 13.0 0.0 7.4 5.3 0.0 2.4 2 0 0 2 2 2 0 Type II/IV secretion system protein KTI12 PF08433.5 gi|452207172|ref|YP_007487294.1| - 0.035 13.2 0.0 9.8 5.2 0.0 2.7 2 0 0 2 2 2 0 Chromatin associated protein KTI12 Guanylate_kin PF00625.16 gi|452207172|ref|YP_007487294.1| - 0.083 12.3 0.2 43 3.4 0.0 3.6 2 1 1 3 3 3 0 Guanylate kinase Vps4_C PF09336.5 gi|452207172|ref|YP_007487294.1| - 0.1 12.5 0.1 0.68 9.8 0.0 2.3 2 0 0 2 2 2 0 Vps4 C terminal oligomerisation domain AFG1_ATPase PF03969.11 gi|452207172|ref|YP_007487294.1| - 0.11 11.2 0.0 1.8 7.3 0.0 2.2 2 0 0 2 2 2 0 AFG1-like ATPase TrmB PF01978.14 gi|452207173|ref|YP_007487295.1| - 1.8e-05 24.3 0.0 3.6e-05 23.3 0.0 1.5 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.15 gi|452207173|ref|YP_007487295.1| - 0.0024 17.4 0.1 0.004 16.8 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|452207173|ref|YP_007487295.1| - 0.009 15.3 0.0 0.014 14.7 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Rrf2 PF02082.15 gi|452207173|ref|YP_007487295.1| - 0.039 14.0 0.0 0.067 13.3 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator TFIIE_alpha PF02002.12 gi|452207173|ref|YP_007487295.1| - 0.13 11.7 0.0 0.18 11.3 0.0 1.2 1 0 0 1 1 1 0 TFIIE alpha subunit HTH_AsnC-type PF13404.1 gi|452207175|ref|YP_007487297.1| - 5.6e-13 48.1 1.2 2.3e-05 23.8 0.0 2.6 2 0 0 2 2 2 2 AsnC-type helix-turn-helix domain HTH_24 PF13412.1 gi|452207175|ref|YP_007487297.1| - 1.2e-06 27.8 0.1 0.0057 16.0 0.0 2.5 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding Glycos_transf_3 PF00591.16 gi|452207176|ref|YP_007487298.1| - 5.4e-30 104.6 0.0 8.8e-30 103.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.12 gi|452207176|ref|YP_007487298.1| - 2.6e-13 49.3 0.2 1.3e-12 47.1 0.0 2.2 2 1 0 2 2 2 1 Glycosyl transferase family, helical bundle domain Tol_Tol_Ttg2 PF05494.7 gi|452207176|ref|YP_007487298.1| - 0.024 14.1 0.0 0.041 13.4 0.0 1.3 1 0 0 1 1 1 0 Toluene tolerance, Ttg2 DUF981 PF06168.6 gi|452207177|ref|YP_007487299.1| - 0.012 15.3 7.9 0.014 15.1 5.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF981) UPF0233 PF06781.7 gi|452207177|ref|YP_007487299.1| - 0.061 12.9 0.3 0.061 12.9 0.2 1.5 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0233) 7TMR-DISM_7TM PF07695.6 gi|452207177|ref|YP_007487299.1| - 0.081 12.5 9.4 0.092 12.3 6.5 1.1 1 0 0 1 1 1 0 7TM diverse intracellular signalling DUF3611 PF12263.3 gi|452207177|ref|YP_007487299.1| - 0.91 8.8 6.9 0.51 9.7 2.5 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF3611) DUF2721 PF11026.3 gi|452207177|ref|YP_007487299.1| - 3 7.5 8.3 1.3 8.7 2.4 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF2721) YesK PF14150.1 gi|452207177|ref|YP_007487299.1| - 3.6 7.7 10.0 5.8 7.0 6.0 1.8 1 1 1 2 2 2 0 YesK-like protein HTH_20 PF12840.2 gi|452207178|ref|YP_007487300.1| - 8.6e-09 35.0 0.4 1.3e-08 34.4 0.3 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|452207178|ref|YP_007487300.1| - 0.00018 21.0 0.1 0.0003 20.4 0.1 1.3 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|452207178|ref|YP_007487300.1| - 0.0013 18.4 0.0 0.002 17.7 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_7 PF02796.10 gi|452207178|ref|YP_007487300.1| - 0.011 15.5 0.0 0.057 13.2 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase PadR PF03551.9 gi|452207178|ref|YP_007487300.1| - 0.017 14.8 0.0 0.029 14.1 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family HTH_8 PF02954.14 gi|452207178|ref|YP_007487300.1| - 0.03 13.8 0.0 0.056 12.9 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family HTH_IclR PF09339.5 gi|452207178|ref|YP_007487300.1| - 0.036 13.6 0.1 0.064 12.8 0.1 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain Pro_isomerase PF00160.16 gi|452207179|ref|YP_007487301.1| - 8.5e-49 165.7 0.0 9.7e-49 165.5 0.0 1.0 1 0 0 1 1 1 1 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD NUDIX PF00293.23 gi|452207180|ref|YP_007487302.1| - 2.2e-15 56.4 0.3 3.1e-15 55.9 0.2 1.2 1 0 0 1 1 1 1 NUDIX domain zf-CHY PF05495.7 gi|452207181|ref|YP_007487303.1| - 2.5e-15 56.3 4.2 3.6e-15 55.8 2.9 1.2 1 0 0 1 1 1 1 CHY zinc finger Cytochrome_C7 PF14522.1 gi|452207181|ref|YP_007487303.1| - 0.0053 16.3 1.5 0.0082 15.7 1.0 1.3 1 0 0 1 1 1 1 Cytochrome c7 C1_3 PF07649.7 gi|452207181|ref|YP_007487303.1| - 0.012 15.5 1.5 0.012 15.5 1.1 2.4 2 0 0 2 2 2 0 C1-like domain zinc_ribbon_5 PF13719.1 gi|452207181|ref|YP_007487303.1| - 0.019 14.5 3.6 3 7.4 0.1 3.0 3 0 0 3 3 3 0 zinc-ribbon domain DZR PF12773.2 gi|452207181|ref|YP_007487303.1| - 0.04 13.7 8.8 0.42 10.4 6.1 2.3 1 1 0 1 1 1 0 Double zinc ribbon zf-C2H2 PF00096.21 gi|452207181|ref|YP_007487303.1| - 0.056 13.8 5.5 11 6.5 0.5 3.4 3 0 0 3 3 3 0 Zinc finger, C2H2 type OrfB_Zn_ribbon PF07282.6 gi|452207181|ref|YP_007487303.1| - 0.096 12.3 0.7 0.096 12.3 0.5 2.0 2 1 0 2 2 2 0 Putative transposase DNA-binding domain zinc_ribbon_2 PF13240.1 gi|452207181|ref|YP_007487303.1| - 0.11 11.9 6.0 3.8 7.1 0.2 3.7 3 1 0 3 3 3 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|452207181|ref|YP_007487303.1| - 0.17 11.6 5.6 4.4 7.0 0.1 3.0 3 0 0 3 3 3 0 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|452207181|ref|YP_007487303.1| - 0.57 9.4 9.3 0.4 9.9 0.8 2.7 1 1 2 3 3 3 0 zinc-ribbon domain A2L_zn_ribbon PF08792.5 gi|452207181|ref|YP_007487303.1| - 1.9 8.0 6.2 9.2 5.8 0.1 3.2 3 0 0 3 3 3 0 A2L zinc ribbon domain zf-C2H2_6 PF13912.1 gi|452207181|ref|YP_007487303.1| - 6.3 6.8 7.5 6.4 6.8 0.0 3.2 3 0 0 3 3 3 0 C2H2-type zinc finger ADK_lid PF05191.9 gi|452207181|ref|YP_007487303.1| - 9.9 5.9 7.2 1.5 8.5 0.3 2.8 3 0 0 3 3 3 0 Adenylate kinase, active site lid Cupin_2 PF07883.6 gi|452207182|ref|YP_007487304.1| - 1.7e-13 49.8 0.9 2.3e-13 49.4 0.6 1.2 1 0 0 1 1 1 1 Cupin domain Cupin_7 PF12973.2 gi|452207182|ref|YP_007487304.1| - 9.8e-05 22.1 0.1 0.00013 21.6 0.0 1.3 1 0 0 1 1 1 1 ChrR Cupin-like domain 3-HAO PF06052.7 gi|452207182|ref|YP_007487304.1| - 0.0053 16.1 0.0 0.0065 15.9 0.0 1.1 1 0 0 1 1 1 1 3-hydroxyanthranilic acid dioxygenase Auxin_BP PF02041.11 gi|452207182|ref|YP_007487304.1| - 0.038 13.4 0.0 0.051 13.0 0.0 1.2 1 0 0 1 1 1 0 Auxin binding protein Cupin_3 PF05899.7 gi|452207182|ref|YP_007487304.1| - 0.058 12.7 0.1 0.084 12.2 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF861) eIF-5_eIF-2B PF01873.12 gi|452207183|ref|YP_007487305.1| - 4e-27 94.3 0.0 4.6e-27 94.1 0.0 1.0 1 0 0 1 1 1 1 Domain found in IF2B/IF5 DNA_RNApol_7kD PF03604.8 gi|452207183|ref|YP_007487305.1| - 0.003 16.9 2.2 0.63 9.5 0.1 2.3 2 0 0 2 2 2 2 DNA directed RNA polymerase, 7 kDa subunit TF_Zn_Ribbon PF08271.7 gi|452207183|ref|YP_007487305.1| - 0.0046 16.2 1.4 0.0082 15.4 0.9 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding DUF2387 PF09526.5 gi|452207183|ref|YP_007487305.1| - 0.0071 16.2 0.3 0.014 15.2 0.2 1.4 1 0 0 1 1 1 1 Probable metal-binding protein (DUF2387) zf-ribbon_3 PF13248.1 gi|452207183|ref|YP_007487305.1| - 0.036 13.2 2.2 3.5 6.9 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Lar_restr_allev PF14354.1 gi|452207183|ref|YP_007487305.1| - 0.042 14.1 0.4 0.084 13.1 0.2 1.6 1 0 0 1 1 1 0 Restriction alleviation protein Lar ApoLp-III PF07464.6 gi|452207183|ref|YP_007487305.1| - 0.12 12.3 0.1 0.21 11.5 0.0 1.4 2 0 0 2 2 1 0 Apolipophorin-III precursor (apoLp-III) OrfB_Zn_ribbon PF07282.6 gi|452207183|ref|YP_007487305.1| - 0.13 11.9 0.3 0.23 11.1 0.2 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain DZR PF12773.2 gi|452207183|ref|YP_007487305.1| - 0.16 11.7 1.0 0.29 10.9 0.7 1.5 1 1 0 1 1 1 0 Double zinc ribbon DUF164 PF02591.10 gi|452207183|ref|YP_007487305.1| - 0.24 11.2 2.1 6.1 6.7 0.2 2.3 1 1 1 2 2 2 0 Putative zinc ribbon domain zf-NADH-PPase PF09297.6 gi|452207183|ref|YP_007487305.1| - 0.26 10.8 1.9 16 5.1 0.1 2.5 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zinc_ribbon_4 PF13717.1 gi|452207183|ref|YP_007487305.1| - 0.41 10.3 3.9 5.8 6.6 2.6 2.3 1 1 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|452207183|ref|YP_007487305.1| - 0.43 10.2 3.6 6.1 6.5 2.4 2.3 1 1 0 1 1 1 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|452207183|ref|YP_007487305.1| - 0.88 9.5 3.0 8.2 6.4 0.1 2.1 1 1 1 2 2 2 0 Zinc ribbon domain DUF35_N PF12172.3 gi|452207183|ref|YP_007487305.1| - 6.3 6.8 7.8 14 5.7 0.1 2.9 3 1 0 3 3 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Form_Nir_trans PF01226.12 gi|452207184|ref|YP_007487306.1| - 8.2e-54 182.1 13.4 9.4e-54 181.9 9.3 1.0 1 0 0 1 1 1 1 Formate/nitrite transporter Usp PF00582.21 gi|452207185|ref|YP_007487307.1| - 5.5e-17 62.2 0.1 6.4e-17 62.0 0.1 1.1 1 0 0 1 1 1 1 Universal stress protein family B12-binding PF02310.14 gi|452207185|ref|YP_007487307.1| - 0.011 15.6 0.1 0.044 13.6 0.0 1.8 2 0 0 2 2 2 0 B12 binding domain HMG-CoA_red PF00368.13 gi|452207186|ref|YP_007487308.1| - 3.8e-135 450.3 9.9 4.3e-135 450.1 6.9 1.0 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A reductase NadA PF02445.11 gi|452207187|ref|YP_007487309.1| - 1.1e-99 332.9 0.0 1.3e-99 332.7 0.0 1.0 1 0 0 1 1 1 1 Quinolinate synthetase A protein FAD_binding_2 PF00890.19 gi|452207188|ref|YP_007487310.1| - 5.6e-72 242.8 14.2 7e-72 242.5 9.9 1.1 1 0 0 1 1 1 1 FAD binding domain DAO PF01266.19 gi|452207188|ref|YP_007487310.1| - 1.6e-12 46.9 1.0 1e-09 37.7 0.1 2.9 3 0 0 3 3 3 2 FAD dependent oxidoreductase GIDA PF01134.17 gi|452207188|ref|YP_007487310.1| - 1.4e-07 30.7 1.3 3.4e-05 22.8 1.0 2.2 2 0 0 2 2 2 2 Glucose inhibited division protein A FAD_oxidored PF12831.2 gi|452207188|ref|YP_007487310.1| - 7.6e-07 28.5 8.0 4.9e-06 25.8 4.3 2.4 2 0 0 2 2 2 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|452207188|ref|YP_007487310.1| - 6e-06 26.2 5.0 4.5e-05 23.4 0.0 2.8 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Succ_DH_flav_C PF02910.15 gi|452207188|ref|YP_007487310.1| - 7.9e-06 25.7 0.3 1.6e-05 24.7 0.2 1.5 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term NAD_binding_8 PF13450.1 gi|452207188|ref|YP_007487310.1| - 7.8e-05 22.6 0.4 0.00042 20.2 0.5 2.0 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.9 gi|452207188|ref|YP_007487310.1| - 0.00072 18.1 1.1 0.024 13.1 0.5 2.2 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox PF00070.22 gi|452207188|ref|YP_007487310.1| - 0.0016 18.7 0.1 0.0039 17.5 0.0 1.7 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|452207188|ref|YP_007487310.1| - 0.0056 15.7 0.1 0.0099 14.9 0.1 1.4 1 0 0 1 1 1 1 FAD binding domain AlaDh_PNT_C PF01262.16 gi|452207188|ref|YP_007487310.1| - 0.0084 15.6 0.0 0.015 14.8 0.0 1.4 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_7 PF13241.1 gi|452207188|ref|YP_007487310.1| - 0.023 14.9 0.0 0.041 14.1 0.0 1.4 1 0 0 1 1 1 0 Putative NAD(P)-binding ApbA PF02558.11 gi|452207188|ref|YP_007487310.1| - 0.074 12.4 0.0 1.8 8.0 0.0 2.6 3 0 0 3 3 3 0 Ketopantoate reductase PanE/ApbA 3HCDH_N PF02737.13 gi|452207188|ref|YP_007487310.1| - 0.12 12.0 0.0 0.25 10.9 0.0 1.6 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain QRPTase_C PF01729.14 gi|452207189|ref|YP_007487311.1| - 4.2e-53 179.3 2.8 5.4e-53 178.9 1.9 1.1 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.11 gi|452207189|ref|YP_007487311.1| - 9.3e-18 63.8 0.1 2.6e-17 62.4 0.1 1.8 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain TMP-TENI PF02581.12 gi|452207189|ref|YP_007487311.1| - 0.045 12.8 0.9 0.77 8.8 0.2 2.5 1 1 0 2 2 2 0 Thiamine monophosphate synthase/TENI SAM_MT PF04445.8 gi|452207189|ref|YP_007487311.1| - 0.11 11.6 0.0 0.17 11.0 0.0 1.2 1 0 0 1 1 1 0 Putative SAM-dependent methyltransferase DUF3311 PF11755.3 gi|452207190|ref|YP_007487312.1| - 2.9e-13 49.1 17.7 3.2e-13 49.0 12.3 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3311) DUF4191 PF13829.1 gi|452207190|ref|YP_007487312.1| - 0.3 10.1 6.0 0.31 10.1 4.1 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4191) SSF PF00474.12 gi|452207191|ref|YP_007487313.1| - 1.8e-40 138.8 28.6 2.6e-40 138.3 19.8 1.2 1 0 0 1 1 1 1 Sodium:solute symporter family DJ-1_PfpI PF01965.19 gi|452207192|ref|YP_007487314.1| - 6.8e-36 122.9 0.0 8.5e-36 122.6 0.0 1.2 1 0 0 1 1 1 1 DJ-1/PfpI family DUF4066 PF13278.1 gi|452207192|ref|YP_007487314.1| - 2e-11 43.4 0.0 2.9e-11 42.9 0.0 1.2 1 0 0 1 1 1 1 Putative amidotransferase GATase PF00117.23 gi|452207192|ref|YP_007487314.1| - 0.00014 21.4 0.0 0.00023 20.6 0.0 1.4 1 1 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.9 gi|452207192|ref|YP_007487314.1| - 0.00032 20.3 0.0 0.0022 17.6 0.0 2.0 2 0 0 2 2 2 1 CobB/CobQ-like glutamine amidotransferase domain GATase_5 PF13507.1 gi|452207192|ref|YP_007487314.1| - 0.0022 16.9 0.0 0.0036 16.2 0.0 1.5 1 1 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain Glyco_trans_4_2 PF13477.1 gi|452207192|ref|YP_007487314.1| - 0.079 12.7 0.0 0.12 12.2 0.0 1.2 1 0 0 1 1 1 0 Glycosyl transferase 4-like GtrA PF04138.9 gi|452207193|ref|YP_007487315.1| - 2.6e-23 82.2 9.1 3.1e-23 81.9 6.3 1.1 1 0 0 1 1 1 1 GtrA-like protein DUF4229 PF14012.1 gi|452207193|ref|YP_007487315.1| - 2.6 8.0 11.8 4.5 7.2 2.7 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF4229) Sulfatase PF00884.18 gi|452207194|ref|YP_007487316.1| - 3.2e-38 131.6 0.0 4.1e-38 131.3 0.0 1.1 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.17 gi|452207194|ref|YP_007487316.1| - 2.6e-09 36.9 0.1 0.0011 18.4 0.1 2.2 2 0 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase HAT PF02184.11 gi|452207194|ref|YP_007487316.1| - 0.015 15.0 0.0 0.046 13.4 0.0 1.8 2 0 0 2 2 2 0 HAT (Half-A-TPR) repeat DUF2892 PF11127.3 gi|452207195|ref|YP_007487317.1| - 4.5e-09 36.0 2.1 4.7e-09 35.9 1.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2892) AmiS_UreI PF02293.10 gi|452207195|ref|YP_007487317.1| - 0.092 12.3 0.1 0.092 12.3 0.0 1.0 1 0 0 1 1 1 0 AmiS/UreI family transporter adh_short_C2 PF13561.1 gi|452207196|ref|YP_007487318.1| - 1.8e-31 109.7 0.1 2.1e-31 109.5 0.1 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.20 gi|452207196|ref|YP_007487318.1| - 1.6e-30 106.2 4.2 2.2e-30 105.7 2.9 1.2 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|452207196|ref|YP_007487318.1| - 3.5e-12 46.3 1.5 4.6e-12 45.9 1.1 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|452207196|ref|YP_007487318.1| - 0.0022 17.4 0.1 0.0034 16.8 0.0 1.4 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Sucrose_synth PF00862.14 gi|452207196|ref|YP_007487318.1| - 0.049 11.6 0.0 0.062 11.2 0.0 1.1 1 0 0 1 1 1 0 Sucrose synthase Eno-Rase_NADH_b PF12242.3 gi|452207196|ref|YP_007487318.1| - 0.074 12.8 0.2 0.2 11.4 0.1 1.7 1 0 0 1 1 1 0 NAD(P)H binding domain of trans-2-enoyl-CoA reductase LytR_C PF13399.1 gi|452207196|ref|YP_007487318.1| - 0.079 13.3 8.5 0.32 11.4 1.8 2.8 2 1 0 2 2 2 0 LytR cell envelope-related transcriptional attenuator ETF PF01012.16 gi|452207196|ref|YP_007487318.1| - 0.6 9.8 7.4 1.2 8.8 0.6 2.8 2 1 1 3 3 3 0 Electron transfer flavoprotein domain Ins_allergen_rp PF06757.8 gi|452207197|ref|YP_007487319.1| - 0.037 13.5 0.1 0.053 13.0 0.0 1.3 1 0 0 1 1 1 0 Insect allergen related repeat, nitrile-specifier detoxification CheW PF01584.14 gi|452207198|ref|YP_007487320.1| - 1.6e-24 85.9 0.1 2.1e-24 85.5 0.0 1.1 1 0 0 1 1 1 1 CheW-like domain DNA_pol_alpha_N PF12254.3 gi|452207199|ref|YP_007487321.1| - 0.14 11.9 1.9 0.17 11.6 0.4 1.8 1 1 1 2 2 2 0 DNA polymerase alpha subunit p180 N terminal GGDN PF05165.7 gi|452207200|ref|YP_007487322.1| - 1.5e-89 299.2 0.5 2e-89 298.8 0.3 1.0 1 0 0 1 1 1 1 GGDN family Peripla_BP_6 PF13458.1 gi|452207201|ref|YP_007487323.1| - 7.3e-28 97.9 7.6 1.6e-21 77.0 2.8 2.1 2 0 0 2 2 2 2 Periplasmic binding protein ANF_receptor PF01094.23 gi|452207201|ref|YP_007487323.1| - 5.7e-17 61.5 1.9 5.6e-14 51.6 0.2 2.1 2 0 0 2 2 2 2 Receptor family ligand binding region TAT_signal PF10518.4 gi|452207201|ref|YP_007487323.1| - 0.00034 20.3 0.2 0.00034 20.3 0.2 2.4 2 0 0 2 2 2 1 TAT (twin-arginine translocation) pathway signal sequence ABC_tran PF00005.22 gi|452207202|ref|YP_007487324.1| - 1.5e-31 109.5 0.0 2e-31 109.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|452207202|ref|YP_007487324.1| - 1.5e-11 44.8 0.1 6.5e-05 23.0 0.1 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|452207202|ref|YP_007487324.1| - 0.00028 20.1 0.9 0.0042 16.3 0.1 2.2 1 1 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|452207202|ref|YP_007487324.1| - 0.00031 20.2 0.0 0.0006 19.2 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|452207202|ref|YP_007487324.1| - 0.00059 20.2 0.0 0.00074 19.9 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|452207202|ref|YP_007487324.1| - 0.0031 17.5 0.0 0.009 16.0 0.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|452207202|ref|YP_007487324.1| - 0.004 17.2 0.1 0.14 12.3 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_10 PF12846.2 gi|452207202|ref|YP_007487324.1| - 0.0091 15.4 1.2 0.024 14.0 0.4 1.9 1 1 0 2 2 2 1 AAA-like domain AAA_25 PF13481.1 gi|452207202|ref|YP_007487324.1| - 0.01 15.2 0.1 0.046 13.1 0.0 1.9 2 0 0 2 2 2 1 AAA domain Miro PF08477.8 gi|452207202|ref|YP_007487324.1| - 0.031 14.7 0.0 0.057 13.9 0.0 1.5 1 0 0 1 1 1 0 Miro-like protein NB-ARC PF00931.17 gi|452207202|ref|YP_007487324.1| - 0.039 12.8 0.1 0.057 12.2 0.1 1.2 1 0 0 1 1 1 0 NB-ARC domain AAA_18 PF13238.1 gi|452207202|ref|YP_007487324.1| - 0.039 14.2 0.1 0.5 10.6 0.0 2.4 2 1 0 2 2 2 0 AAA domain AAA_33 PF13671.1 gi|452207202|ref|YP_007487324.1| - 0.061 13.2 0.2 0.12 12.2 0.1 1.6 1 1 0 1 1 1 0 AAA domain AAA_15 PF13175.1 gi|452207202|ref|YP_007487324.1| - 0.061 12.3 0.0 0.31 10.0 0.0 1.8 2 0 0 2 2 2 0 AAA ATPase domain MobB PF03205.9 gi|452207202|ref|YP_007487324.1| - 0.064 12.9 0.1 0.11 12.2 0.1 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_14 PF13173.1 gi|452207202|ref|YP_007487324.1| - 0.065 13.1 0.0 0.11 12.3 0.0 1.8 1 1 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|452207202|ref|YP_007487324.1| - 0.065 12.4 0.0 0.1 11.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF258 MutS_V PF00488.16 gi|452207202|ref|YP_007487324.1| - 0.07 12.5 0.0 0.1 12.0 0.0 1.3 1 0 0 1 1 1 0 MutS domain V NACHT PF05729.7 gi|452207202|ref|YP_007487324.1| - 0.084 12.5 0.0 0.16 11.6 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_30 PF13604.1 gi|452207202|ref|YP_007487324.1| - 0.091 12.3 0.0 0.18 11.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.18 gi|452207202|ref|YP_007487324.1| - 0.1 12.5 0.3 0.41 10.6 0.2 2.1 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA PF00004.24 gi|452207202|ref|YP_007487324.1| - 0.11 12.6 0.0 0.25 11.5 0.0 1.8 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.1 gi|452207202|ref|YP_007487324.1| - 0.2 12.4 2.4 0.81 10.5 1.7 2.3 1 1 0 1 1 1 0 AAA domain SbcCD_C PF13558.1 gi|452207202|ref|YP_007487324.1| - 0.28 11.1 2.7 11 6.0 1.9 2.4 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit ABC_tran PF00005.22 gi|452207203|ref|YP_007487325.1| - 4.4e-30 104.7 0.0 6.1e-30 104.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|452207203|ref|YP_007487325.1| - 3.9e-14 53.3 1.0 2.5e-08 34.2 0.0 2.1 1 1 0 2 2 2 2 AAA domain BCA_ABC_TP_C PF12399.3 gi|452207203|ref|YP_007487325.1| - 8.6e-10 38.0 0.1 1.5e-09 37.3 0.0 1.4 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_23 PF13476.1 gi|452207203|ref|YP_007487325.1| - 8.5e-05 22.9 2.1 0.00014 22.2 1.4 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|452207203|ref|YP_007487325.1| - 0.00014 21.3 1.2 0.00027 20.4 0.2 1.9 2 0 0 2 2 2 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|452207203|ref|YP_007487325.1| - 0.00021 20.5 0.8 0.34 10.0 0.5 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_30 PF13604.1 gi|452207203|ref|YP_007487325.1| - 0.0087 15.6 0.0 0.021 14.4 0.0 1.6 2 0 0 2 2 2 1 AAA domain DUF258 PF03193.11 gi|452207203|ref|YP_007487325.1| - 0.12 11.5 0.1 0.2 10.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_10 PF12846.2 gi|452207203|ref|YP_007487325.1| - 0.15 11.4 0.0 2.6 7.3 0.0 2.1 2 0 0 2 2 2 0 AAA-like domain MMR_HSR1 PF01926.18 gi|452207203|ref|YP_007487325.1| - 0.16 11.9 0.0 0.28 11.1 0.0 1.4 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_15 PF13175.1 gi|452207203|ref|YP_007487325.1| - 0.25 10.3 0.1 11 4.9 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain BPD_transp_2 PF02653.11 gi|452207204|ref|YP_007487326.1| - 8.8e-45 152.7 28.9 8.8e-45 152.7 20.0 1.7 2 1 0 2 2 2 1 Branched-chain amino acid transport system / permease component DUF4271 PF14093.1 gi|452207204|ref|YP_007487326.1| - 0.0013 18.4 0.0 0.0013 18.4 0.0 2.4 2 0 0 2 2 2 1 Domain of unknown function (DUF4271) BPD_transp_2 PF02653.11 gi|452207205|ref|YP_007487327.1| - 1.6e-35 122.3 45.2 4.5e-35 120.9 31.4 1.7 1 1 0 1 1 1 1 Branched-chain amino acid transport system / permease component YbgT_YccB PF08173.6 gi|452207205|ref|YP_007487327.1| - 6.9 6.5 14.6 0.54 10.1 3.4 3.8 2 1 1 3 3 2 0 Membrane bound YbgT-like protein PGK PF00162.14 gi|452207206|ref|YP_007487328.1| - 5.3e-107 357.7 0.0 5.9e-107 357.5 0.0 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase Acetyltransf_1 PF00583.19 gi|452207207|ref|YP_007487329.1| - 3.1e-16 59.1 0.4 4.6e-16 58.6 0.3 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|452207207|ref|YP_007487329.1| - 1.2e-14 54.4 0.2 1.4e-14 54.2 0.2 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|452207207|ref|YP_007487329.1| - 4.8e-11 42.6 0.0 7e-11 42.1 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|452207207|ref|YP_007487329.1| - 2.8e-08 33.8 0.0 3.4e-08 33.5 0.0 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|452207207|ref|YP_007487329.1| - 7.4e-06 25.6 0.0 1.2e-05 24.9 0.0 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.1 gi|452207207|ref|YP_007487329.1| - 1.2e-05 25.1 0.1 1.6e-05 24.7 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|452207207|ref|YP_007487329.1| - 0.00012 21.8 0.2 0.00025 20.8 0.0 1.6 2 0 0 2 2 2 1 GCN5-related N-acetyl-transferase Acetyltransf_8 PF13523.1 gi|452207207|ref|YP_007487329.1| - 0.00017 21.5 0.1 0.00022 21.1 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|452207207|ref|YP_007487329.1| - 0.0033 17.5 0.0 0.004 17.3 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_13 PF13880.1 gi|452207207|ref|YP_007487329.1| - 0.076 12.7 0.0 0.29 10.9 0.0 1.9 2 0 0 2 2 2 0 ESCO1/2 acetyl-transferase Trp_halogenase PF04820.9 gi|452207208|ref|YP_007487330.1| - 3.1e-11 42.5 1.6 1e-07 30.9 0.0 2.1 2 0 0 2 2 2 2 Tryptophan halogenase FAD_binding_2 PF00890.19 gi|452207208|ref|YP_007487330.1| - 1e-09 37.7 4.4 5.1e-06 25.5 0.2 2.5 3 0 0 3 3 3 2 FAD binding domain DAO PF01266.19 gi|452207208|ref|YP_007487330.1| - 8e-08 31.5 10.2 0.00053 18.9 2.3 2.6 2 1 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|452207208|ref|YP_007487330.1| - 9.1e-08 31.5 4.2 2.7e-06 26.6 2.9 2.4 1 1 0 1 1 1 1 FAD binding domain NAD_binding_8 PF13450.1 gi|452207208|ref|YP_007487330.1| - 1e-06 28.6 2.3 3.8e-05 23.6 0.2 2.9 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain GIDA PF01134.17 gi|452207208|ref|YP_007487330.1| - 7.6e-06 25.0 0.4 1.3e-05 24.2 0.3 1.3 1 0 0 1 1 1 1 Glucose inhibited division protein A FAD_oxidored PF12831.2 gi|452207208|ref|YP_007487330.1| - 1.7e-05 24.1 6.5 0.0031 16.6 2.6 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase Thi4 PF01946.12 gi|452207208|ref|YP_007487330.1| - 2.1e-05 23.7 0.7 6e-05 22.2 0.5 1.7 2 0 0 2 2 2 1 Thi4 family Pyr_redox_3 PF13738.1 gi|452207208|ref|YP_007487330.1| - 2.4e-05 24.4 0.0 4.9e-05 23.4 0.0 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.9 gi|452207208|ref|YP_007487330.1| - 3.9e-05 23.6 1.0 3.9e-05 23.6 0.7 1.9 2 1 0 2 2 1 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|452207208|ref|YP_007487330.1| - 0.00038 19.0 0.7 0.00069 18.2 0.5 1.4 1 0 0 1 1 1 1 HI0933-like protein 3HCDH_N PF02737.13 gi|452207208|ref|YP_007487330.1| - 0.00043 19.9 0.1 0.00071 19.2 0.1 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox PF00070.22 gi|452207208|ref|YP_007487330.1| - 0.0037 17.6 1.4 0.0037 17.6 1.0 2.5 3 0 0 3 3 2 1 Pyridine nucleotide-disulphide oxidoreductase ApbA PF02558.11 gi|452207208|ref|YP_007487330.1| - 0.0089 15.4 0.0 0.014 14.7 0.0 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA ThiF PF00899.16 gi|452207208|ref|YP_007487330.1| - 0.091 12.5 0.3 0.21 11.4 0.2 1.6 1 0 0 1 1 1 0 ThiF family RPAP2_Rtr1 PF04181.8 gi|452207208|ref|YP_007487330.1| - 0.16 12.0 0.0 0.3 11.1 0.0 1.4 1 0 0 1 1 1 0 Rtr1/RPAP2 family Lycopene_cycl PF05834.7 gi|452207208|ref|YP_007487330.1| - 0.26 10.1 2.3 0.18 10.7 0.3 1.6 2 0 0 2 2 2 0 Lycopene cyclase protein RNA_pol_L_2 PF13656.1 gi|452207209|ref|YP_007487331.1| - 8.5e-15 53.9 0.0 1e-14 53.6 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain RNA_pol_L PF01193.19 gi|452207209|ref|YP_007487331.1| - 2.1e-07 29.9 0.0 3e-07 29.4 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain zinc_ribbon_2 PF13240.1 gi|452207210|ref|YP_007487332.1| - 2e-06 27.0 16.3 0.0013 18.1 4.4 2.4 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.2 gi|452207210|ref|YP_007487332.1| - 0.00027 20.6 8.8 0.00076 19.2 6.0 1.8 1 1 1 2 2 2 2 Double zinc ribbon zf-TFIIB PF13453.1 gi|452207210|ref|YP_007487332.1| - 0.0021 17.2 2.8 0.7 9.1 0.3 2.7 2 0 0 2 2 2 2 Transcription factor zinc-finger zf-ribbon_3 PF13248.1 gi|452207210|ref|YP_007487332.1| - 0.0028 16.8 14.1 0.0048 16.0 1.8 2.9 3 0 0 3 3 3 2 zinc-ribbon domain zf-FPG_IleRS PF06827.9 gi|452207210|ref|YP_007487332.1| - 0.0083 15.7 5.6 1.2 8.8 0.1 3.6 3 0 0 3 3 3 2 Zinc finger found in FPG and IleRS Rubredoxin PF00301.15 gi|452207210|ref|YP_007487332.1| - 0.028 14.3 10.9 0.18 11.6 5.2 3.0 2 1 0 2 2 2 0 Rubredoxin zf-C2HC5 PF06221.8 gi|452207210|ref|YP_007487332.1| - 0.036 13.8 4.7 0.15 11.8 0.1 2.6 3 0 0 3 3 3 0 Putative zinc finger motif, C2HC5-type Ribosomal_L37e PF01907.14 gi|452207210|ref|YP_007487332.1| - 0.08 12.7 4.6 0.81 9.5 0.6 2.5 2 0 0 2 2 2 0 Ribosomal protein L37e PhnA_Zn_Ribbon PF08274.7 gi|452207210|ref|YP_007487332.1| - 0.28 10.9 0.1 0.28 10.9 0.0 3.5 4 0 0 4 4 4 0 PhnA Zinc-Ribbon HypA PF01155.14 gi|452207210|ref|YP_007487332.1| - 0.32 10.6 7.3 0.94 9.1 0.3 2.2 1 1 1 2 2 2 0 Hydrogenase expression/synthesis hypA family Gmx_para_CXXCG PF09535.5 gi|452207210|ref|YP_007487332.1| - 0.65 8.9 2.5 5.9 5.8 0.1 2.6 2 0 0 2 2 2 0 Protein of unknown function (Gmx_para_CXXCG) NOB1_Zn_bind PF08772.6 gi|452207210|ref|YP_007487332.1| - 2.6 7.9 6.6 2.6 7.9 0.0 3.0 2 1 1 3 3 3 0 Nin one binding (NOB1) Zn-ribbon like DUF1451 PF07295.6 gi|452207210|ref|YP_007487332.1| - 4 7.2 7.1 10 5.8 0.5 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1451) His_biosynth PF00977.16 gi|452207211|ref|YP_007487333.1| - 1e-80 270.2 0.1 1.2e-80 270.1 0.1 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein ThiG PF05690.9 gi|452207211|ref|YP_007487333.1| - 1.8e-08 33.7 0.1 7.3e-05 21.9 0.0 2.1 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG Dus PF01207.12 gi|452207211|ref|YP_007487333.1| - 1.1e-07 30.9 0.0 0.00034 19.5 0.0 2.1 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) NMO PF03060.10 gi|452207211|ref|YP_007487333.1| - 1.1e-05 24.7 0.1 0.04 13.0 0.0 2.1 2 0 0 2 2 2 2 Nitronate monooxygenase PcrB PF01884.12 gi|452207211|ref|YP_007487333.1| - 0.00057 19.2 0.2 0.0069 15.6 0.1 2.5 2 1 1 3 3 3 1 PcrB family IMPDH PF00478.20 gi|452207211|ref|YP_007487333.1| - 0.0082 15.0 0.1 0.033 13.0 0.1 1.8 2 0 0 2 2 2 1 IMP dehydrogenase / GMP reductase domain TMP-TENI PF02581.12 gi|452207211|ref|YP_007487333.1| - 0.012 14.7 0.1 0.56 9.2 0.0 2.4 2 1 0 2 2 2 0 Thiamine monophosphate synthase/TENI DHO_dh PF01180.16 gi|452207211|ref|YP_007487333.1| - 0.039 12.9 0.0 0.093 11.6 0.0 1.6 2 0 0 2 2 2 0 Dihydroorotate dehydrogenase IGPS PF00218.16 gi|452207211|ref|YP_007487333.1| - 0.13 11.2 0.0 0.91 8.5 0.0 2.0 2 0 0 2 2 2 0 Indole-3-glycerol phosphate synthase EamA PF00892.15 gi|452207212|ref|YP_007487334.1| - 2.7e-09 37.1 8.9 3.3e-09 36.8 6.2 1.1 1 0 0 1 1 1 1 EamA-like transporter family Mg_trans_NIPA PF05653.9 gi|452207212|ref|YP_007487334.1| - 0.0037 16.2 3.0 0.0061 15.5 2.1 1.3 1 0 0 1 1 1 1 Magnesium transporter NIPA EmrE PF13536.1 gi|452207212|ref|YP_007487334.1| - 1.3 9.2 9.6 0.69 10.1 5.2 1.6 1 1 1 2 2 2 0 Multidrug resistance efflux transporter PMT_2 PF13231.1 gi|452207212|ref|YP_007487334.1| - 4.2 7.2 11.2 9.8 6.0 7.8 1.8 1 1 0 1 1 1 0 Dolichyl-phosphate-mannose-protein mannosyltransferase AhpC-TSA PF00578.16 gi|452207213|ref|YP_007487335.1| - 1.3e-12 47.4 0.0 1.7e-12 47.0 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|452207213|ref|YP_007487335.1| - 1.6e-12 47.2 0.0 2e-12 46.8 0.0 1.1 1 0 0 1 1 1 1 Redoxin Thioredoxin_2 PF13098.1 gi|452207213|ref|YP_007487335.1| - 0.0027 17.8 0.0 0.0037 17.4 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_8 PF13905.1 gi|452207213|ref|YP_007487335.1| - 0.0037 17.3 0.0 0.0047 17.0 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin-like Thioredoxin PF00085.15 gi|452207213|ref|YP_007487335.1| - 0.14 11.8 0.2 0.45 10.2 0.1 1.7 1 1 1 2 2 2 0 Thioredoxin Methyltransf_3 PF01596.12 gi|452207214|ref|YP_007487336.1| - 2.5e-18 65.8 0.0 2.7e-17 62.5 0.0 1.9 2 0 0 2 2 2 1 O-methyltransferase Methyltransf_24 PF13578.1 gi|452207214|ref|YP_007487336.1| - 2.1e-11 44.5 0.0 3.3e-11 43.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|452207214|ref|YP_007487336.1| - 5.6e-09 36.5 0.0 1e-08 35.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|452207214|ref|YP_007487336.1| - 2.2e-06 27.6 0.0 5.7e-06 26.3 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|452207214|ref|YP_007487336.1| - 9.4e-06 25.2 0.0 1.2e-05 24.9 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|452207214|ref|YP_007487336.1| - 0.0063 16.8 0.0 0.0096 16.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|452207214|ref|YP_007487336.1| - 0.0077 15.7 0.0 0.011 15.2 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) FKBP_C PF00254.23 gi|452207215|ref|YP_007487337.1| - 4.5e-24 84.2 0.2 7.2e-24 83.6 0.1 1.4 1 1 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase Filamin PF00630.14 gi|452207215|ref|YP_007487337.1| - 0.083 13.4 0.0 0.2 12.2 0.0 1.7 1 1 0 1 1 1 0 Filamin/ABP280 repeat L_biotic_typeA PF04604.8 gi|452207215|ref|YP_007487337.1| - 0.14 11.7 0.2 0.27 10.9 0.1 1.4 1 0 0 1 1 1 0 Type-A lantibiotic NAD_binding_10 PF13460.1 gi|452207216|ref|YP_007487338.1| - 2.3e-30 105.9 0.0 4.9e-30 104.8 0.0 1.6 2 0 0 2 2 2 1 NADH(P)-binding Epimerase PF01370.16 gi|452207216|ref|YP_007487338.1| - 3.1e-21 75.8 0.0 1.4e-20 73.7 0.0 1.8 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|452207216|ref|YP_007487338.1| - 6.1e-16 57.9 0.0 2.3e-13 49.4 0.0 2.1 1 1 1 2 2 2 2 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.12 gi|452207216|ref|YP_007487338.1| - 5.9e-13 48.3 0.0 1.8e-08 33.6 0.0 2.1 2 0 0 2 2 2 2 RmlD substrate binding domain NmrA PF05368.8 gi|452207216|ref|YP_007487338.1| - 1.2e-08 34.4 0.0 1.8e-08 33.9 0.0 1.2 1 0 0 1 1 1 1 NmrA-like family NAD_binding_4 PF07993.7 gi|452207216|ref|YP_007487338.1| - 1.6e-08 33.8 0.0 0.0014 17.6 0.0 2.3 1 1 0 2 2 2 2 Male sterility protein adh_short PF00106.20 gi|452207216|ref|YP_007487338.1| - 4.6e-05 23.3 0.2 9.8e-05 22.3 0.1 1.8 1 1 0 1 1 1 1 short chain dehydrogenase Polysacc_synt_2 PF02719.10 gi|452207216|ref|YP_007487338.1| - 0.00015 20.8 0.0 0.0033 16.3 0.0 2.1 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein Saccharop_dh PF03435.13 gi|452207216|ref|YP_007487338.1| - 0.0029 16.6 0.0 0.0057 15.6 0.0 1.4 2 0 0 2 2 2 1 Saccharopine dehydrogenase DapB_N PF01113.15 gi|452207216|ref|YP_007487338.1| - 0.0077 16.1 0.1 0.02 14.7 0.0 1.7 2 0 0 2 2 2 1 Dihydrodipicolinate reductase, N-terminus TrkA_N PF02254.13 gi|452207216|ref|YP_007487338.1| - 0.014 15.4 0.0 0.027 14.4 0.0 1.5 1 0 0 1 1 1 0 TrkA-N domain NAD_binding_2 PF03446.10 gi|452207216|ref|YP_007487338.1| - 0.035 13.9 0.0 0.058 13.2 0.0 1.3 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase Glyco_transf_4 PF13439.1 gi|452207216|ref|YP_007487338.1| - 0.046 13.4 0.0 0.072 12.8 0.0 1.3 1 0 0 1 1 1 0 Glycosyltransferase Family 4 Semialdhyde_dh PF01118.19 gi|452207216|ref|YP_007487338.1| - 0.062 13.6 0.0 0.11 12.7 0.0 1.5 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain Tubulin PF00091.20 gi|452207217|ref|YP_007487339.1| - 4.9e-27 95.1 0.0 1.2e-26 93.9 0.0 1.6 1 1 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain Nbl1_Borealin_N PF10444.4 gi|452207217|ref|YP_007487339.1| - 0.12 11.7 0.7 0.32 10.3 0.5 1.7 1 0 0 1 1 1 0 Nbl1 / Borealin N terminal DUF4398 PF14346.1 gi|452207218|ref|YP_007487340.1| - 1.4e-05 25.0 1.0 4.1e-05 23.5 0.7 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF4398) PTS_IIA PF02255.11 gi|452207218|ref|YP_007487340.1| - 0.0025 17.6 0.3 0.0063 16.3 0.1 1.7 1 1 0 1 1 1 1 PTS system, Lactose/Cellobiose specific IIA subunit TPR_16 PF13432.1 gi|452207218|ref|YP_007487340.1| - 0.044 14.4 0.7 0.11 13.1 0.1 2.0 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_14 PF13428.1 gi|452207218|ref|YP_007487340.1| - 0.09 13.4 0.2 0.31 11.8 0.1 2.0 1 1 0 1 1 1 0 Tetratricopeptide repeat FixQ PF05545.6 gi|452207218|ref|YP_007487340.1| - 0.094 12.3 0.1 0.094 12.3 0.0 2.3 3 0 0 3 3 3 0 Cbb3-type cytochrome oxidase component FixQ DUF4307 PF14155.1 gi|452207218|ref|YP_007487340.1| - 0.38 10.5 2.9 9.3 6.0 0.1 3.1 3 0 0 3 3 3 0 Domain of unknown function (DUF4307) CofC PF01983.11 gi|452207219|ref|YP_007487341.1| - 8.1e-33 113.2 0.0 9.9e-33 112.9 0.0 1.0 1 0 0 1 1 1 1 Guanylyl transferase CofC like Radical_SAM PF04055.16 gi|452207220|ref|YP_007487342.1| - 2.6e-14 53.7 0.0 7.1e-14 52.3 0.0 1.7 2 1 0 2 2 2 1 Radical SAM superfamily HSP20 PF00011.16 gi|452207221|ref|YP_007487343.1| - 0.00012 21.8 0.0 0.00019 21.2 0.0 1.2 1 0 0 1 1 1 1 Hsp20/alpha crystallin family zf-Di19 PF05605.7 gi|452207222|ref|YP_007487344.1| - 0.043 13.9 0.3 0.079 13.0 0.0 1.6 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding Cys_rich_CPXG PF14255.1 gi|452207222|ref|YP_007487344.1| - 0.082 12.7 0.3 0.14 11.9 0.2 1.4 1 0 0 1 1 1 0 Cysteine-rich CPXCG zf-C2H2 PF00096.21 gi|452207222|ref|YP_007487344.1| - 0.13 12.7 1.7 2 8.9 0.3 2.1 2 0 0 2 2 2 0 Zinc finger, C2H2 type DUF429 PF04250.8 gi|452207223|ref|YP_007487345.1| - 6.5e-05 22.2 0.0 0.00012 21.3 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF429) Gly-zipper_YMGG PF13441.1 gi|452207224|ref|YP_007487346.1| - 0.033 13.6 1.5 0.055 13.0 1.1 1.3 1 0 0 1 1 1 0 YMGG-like Gly-zipper Na_H_Exchanger PF00999.16 gi|452207224|ref|YP_007487346.1| - 0.15 10.5 5.4 0.17 10.3 3.7 1.0 1 0 0 1 1 1 0 Sodium/hydrogen exchanger family YjgP_YjgQ PF03739.9 gi|452207224|ref|YP_007487346.1| - 0.41 9.3 1.7 0.46 9.1 1.2 1.0 1 0 0 1 1 1 0 Predicted permease YjgP/YjgQ family DUF3487 PF11990.3 gi|452207224|ref|YP_007487346.1| - 2.3 7.6 4.2 2.6 7.4 2.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3487) Radical_SAM PF04055.16 gi|452207225|ref|YP_007487347.1| - 9.2e-18 64.9 0.0 5.2e-17 62.5 0.0 2.3 2 1 0 2 2 2 1 Radical SAM superfamily HHH PF00633.18 gi|452207225|ref|YP_007487347.1| - 7.5e-05 22.2 0.0 0.00032 20.2 0.0 2.1 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_3 PF12836.2 gi|452207225|ref|YP_007487347.1| - 0.00025 20.9 0.0 0.00063 19.6 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix motif PsbU PF06514.6 gi|452207225|ref|YP_007487347.1| - 0.02 14.7 0.0 0.055 13.3 0.0 1.7 1 0 0 1 1 1 0 Photosystem II 12 kDa extrinsic protein (PsbU) HHH_5 PF14520.1 gi|452207225|ref|YP_007487347.1| - 0.088 13.0 0.0 0.23 11.6 0.0 1.8 1 0 0 1 1 1 0 Helix-hairpin-helix domain HAD_2 PF13419.1 gi|452207226|ref|YP_007487348.1| - 4.3e-17 62.8 0.0 5.3e-17 62.6 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|452207226|ref|YP_007487348.1| - 1.6e-05 25.4 0.2 7.4e-05 23.2 0.1 1.9 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|452207226|ref|YP_007487348.1| - 0.00023 20.8 0.0 0.00046 19.8 0.0 1.5 1 0 0 1 1 1 1 HAD-hyrolase-like Glyco_transf_28 PF03033.15 gi|452207226|ref|YP_007487348.1| - 0.029 14.1 0.3 0.06 13.1 0.2 1.7 2 0 0 2 2 2 0 Glycosyltransferase family 28 N-terminal domain Peripla_BP_3 PF13377.1 gi|452207226|ref|YP_007487348.1| - 0.03 14.3 2.1 0.9 9.5 0.1 3.0 2 1 1 3 3 3 0 Periplasmic binding protein-like domain CobD_Cbib PF03186.8 gi|452207227|ref|YP_007487349.1| - 8.1e-64 215.5 8.2 1e-63 215.1 5.7 1.1 1 0 0 1 1 1 1 CobD/Cbib protein CobS PF02654.10 gi|452207228|ref|YP_007487350.1| - 1.5e-34 119.6 13.2 1.8e-34 119.3 9.1 1.0 1 0 0 1 1 1 1 Cobalamin-5-phosphate synthase NTP_transf_3 PF12804.2 gi|452207229|ref|YP_007487351.1| - 4.6e-15 56.0 0.8 5.3e-15 55.8 0.6 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain NTP_transferase PF00483.18 gi|452207229|ref|YP_007487351.1| - 0.005 16.1 0.0 0.0065 15.8 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase CTP_transf_3 PF02348.14 gi|452207229|ref|YP_007487351.1| - 0.022 14.3 0.0 0.055 13.0 0.0 1.6 1 1 0 1 1 1 0 Cytidylyltransferase Aminotran_1_2 PF00155.16 gi|452207230|ref|YP_007487352.1| - 6.1e-42 143.8 0.0 7.7e-42 143.5 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|452207230|ref|YP_007487352.1| - 0.017 14.3 0.0 0.13 11.4 0.0 2.2 2 1 0 2 2 2 0 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.12 gi|452207230|ref|YP_007487352.1| - 0.017 14.1 0.5 0.026 13.5 0.0 1.4 2 0 0 2 2 2 0 DegT/DnrJ/EryC1/StrS aminotransferase family CbiZ PF01955.13 gi|452207231|ref|YP_007487353.1| - 1.4e-36 126.1 0.2 1.6e-36 125.9 0.1 1.1 1 0 0 1 1 1 1 Adenosylcobinamide amidohydrolase HTH_10 PF04967.7 gi|452207232|ref|YP_007487354.1| - 6.3e-14 51.2 0.0 9.3e-14 50.7 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain MarR_2 PF12802.2 gi|452207232|ref|YP_007487354.1| - 0.00046 19.7 0.0 0.0014 18.2 0.0 1.9 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|452207232|ref|YP_007487354.1| - 0.032 13.6 0.0 0.059 12.7 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_30 PF13556.1 gi|452207232|ref|YP_007487354.1| - 0.032 13.8 0.0 0.093 12.3 0.0 1.8 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain HTH_20 PF12840.2 gi|452207232|ref|YP_007487354.1| - 0.055 13.2 0.0 0.13 12.0 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_psq PF05225.11 gi|452207232|ref|YP_007487354.1| - 0.6 9.7 2.5 1.2 8.7 0.0 2.3 2 0 0 2 2 2 0 helix-turn-helix, Psq domain bPH_6 PF10756.4 gi|452207232|ref|YP_007487354.1| - 3.9 7.4 9.0 1.4 8.8 0.1 3.0 2 1 0 2 2 2 0 Bacterial PH domain MFS_1 PF07690.11 gi|452207233|ref|YP_007487355.1| - 1.1e-26 93.3 49.6 1.1e-26 93.3 34.3 1.5 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.1 gi|452207233|ref|YP_007487355.1| - 7.4e-08 31.2 12.1 6.9e-07 28.0 8.4 2.2 1 1 0 1 1 1 1 MFS/sugar transport protein MFS_1_like PF12832.2 gi|452207233|ref|YP_007487355.1| - 0.00046 19.9 0.3 0.36 10.6 0.1 3.4 3 0 0 3 3 3 1 MFS_1 like family LacY_symp PF01306.14 gi|452207233|ref|YP_007487355.1| - 0.063 11.8 4.7 0.1 11.1 2.1 2.1 2 1 0 2 2 2 0 LacY proton/sugar symporter SBP_bac_8 PF13416.1 gi|452207234|ref|YP_007487356.1| - 1.9e-18 67.1 0.0 2.3e-18 66.9 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.1 gi|452207234|ref|YP_007487356.1| - 4.2e-13 49.1 0.0 6.6e-13 48.5 0.0 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|452207234|ref|YP_007487356.1| - 1.1e-09 38.5 0.2 1.8e-09 37.7 0.1 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.1 gi|452207234|ref|YP_007487356.1| - 0.00068 19.3 0.1 0.0014 18.2 0.0 1.5 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein ABC_tran PF00005.22 gi|452207235|ref|YP_007487357.1| - 3.8e-32 111.4 0.0 8.8e-32 110.2 0.0 1.6 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.1 gi|452207235|ref|YP_007487357.1| - 6.7e-11 42.6 0.0 1.3e-06 28.5 0.0 2.1 1 1 1 2 2 2 2 AAA domain TOBE_2 PF08402.5 gi|452207235|ref|YP_007487357.1| - 1.1e-09 38.1 2.4 3.7e-09 36.4 0.3 2.6 1 1 1 2 2 2 1 TOBE domain TOBE PF03459.12 gi|452207235|ref|YP_007487357.1| - 2.8e-05 24.1 4.6 0.072 13.2 1.0 3.0 4 0 0 4 4 2 2 TOBE domain SMC_N PF02463.14 gi|452207235|ref|YP_007487357.1| - 0.00013 21.2 0.0 0.0048 16.1 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|452207235|ref|YP_007487357.1| - 0.00018 21.6 0.6 0.004 17.3 0.4 2.3 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|452207235|ref|YP_007487357.1| - 0.0025 17.7 0.3 0.0068 16.4 0.2 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.24 gi|452207235|ref|YP_007487357.1| - 0.006 16.7 0.1 0.075 13.2 0.0 2.1 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.10 gi|452207235|ref|YP_007487357.1| - 0.01 14.5 0.0 0.015 14.0 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA_17 PF13207.1 gi|452207235|ref|YP_007487357.1| - 0.027 15.2 0.8 0.053 14.3 0.5 1.9 1 1 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|452207235|ref|YP_007487357.1| - 0.033 13.3 0.0 0.057 12.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_33 PF13671.1 gi|452207235|ref|YP_007487357.1| - 0.046 13.5 0.0 0.1 12.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|452207235|ref|YP_007487357.1| - 0.048 13.0 0.0 2.1 7.7 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.1 gi|452207235|ref|YP_007487357.1| - 0.049 13.6 0.1 0.13 12.2 0.1 1.7 1 0 0 1 1 1 0 AAA domain Miro PF08477.8 gi|452207235|ref|YP_007487357.1| - 0.073 13.5 0.0 0.55 10.7 0.0 2.1 2 0 0 2 2 2 0 Miro-like protein Zeta_toxin PF06414.7 gi|452207235|ref|YP_007487357.1| - 0.093 11.8 0.2 0.49 9.4 0.0 1.9 2 0 0 2 2 2 0 Zeta toxin NB-ARC PF00931.17 gi|452207235|ref|YP_007487357.1| - 0.16 10.7 0.0 0.27 10.0 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain BPD_transp_1 PF00528.17 gi|452207236|ref|YP_007487358.1| - 3.3e-12 46.2 17.7 3.3e-12 46.2 12.3 2.3 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|452207237|ref|YP_007487359.1| - 2.4e-14 53.2 17.5 2.4e-14 53.2 12.2 1.9 1 1 1 2 2 2 2 Binding-protein-dependent transport system inner membrane component DUF389 PF04087.9 gi|452207237|ref|YP_007487359.1| - 5.5 6.9 18.5 0.15 11.9 4.9 2.8 2 2 0 2 2 2 0 Domain of unknown function (DUF389) Phage_tail_X PF05489.7 gi|452207238|ref|YP_007487360.1| - 0.028 13.9 0.1 0.047 13.1 0.0 1.4 1 0 0 1 1 1 0 Phage Tail Protein X RRM_5 PF13893.1 gi|452207240|ref|YP_007487362.1| - 0.13 12.1 0.0 0.22 11.4 0.0 1.3 1 0 0 1 1 1 0 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) DUF2789 PF10982.3 gi|452207241|ref|YP_007487363.1| - 0.16 12.0 0.3 0.23 11.4 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2789) DoxX PF07681.7 gi|452207242|ref|YP_007487364.1| - 1.7e-09 37.9 2.1 2.8e-09 37.2 1.5 1.3 1 0 0 1 1 1 1 DoxX HR_lesion PF05514.6 gi|452207242|ref|YP_007487364.1| - 0.00056 19.7 0.1 0.0054 16.5 0.0 2.0 1 1 1 2 2 2 1 HR-like lesion-inducing HIPIP PF01355.12 gi|452207243|ref|YP_007487365.1| - 5.5e-05 23.2 0.9 0.00011 22.2 0.6 1.6 1 0 0 1 1 1 1 High potential iron-sulfur protein TAT_signal PF10518.4 gi|452207243|ref|YP_007487365.1| - 0.04 13.9 3.5 0.04 13.9 2.4 1.9 2 1 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence eIF-4B PF06273.6 gi|452207243|ref|YP_007487365.1| - 0.12 11.0 4.3 0.16 10.7 3.0 1.1 1 0 0 1 1 1 0 Plant specific eukaryotic initiation factor 4B SpoVR PF04293.8 gi|452207244|ref|YP_007487366.1| - 4.8e-83 278.9 3.0 1.3e-72 244.5 0.3 2.1 2 0 0 2 2 2 2 SpoVR like protein VPR PF00522.13 gi|452207244|ref|YP_007487366.1| - 0.0095 15.7 2.8 0.14 11.9 0.2 2.8 3 0 0 3 3 3 1 VPR/VPX protein DUF444 PF04285.7 gi|452207245|ref|YP_007487367.1| - 4e-101 338.6 0.0 4.5e-101 338.5 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF444) AAA_PrkA PF08298.6 gi|452207246|ref|YP_007487368.1| - 8.9e-17 60.8 0.0 1.4e-13 50.3 0.0 3.0 2 1 0 2 2 2 2 PrkA AAA domain PrkA PF06798.7 gi|452207246|ref|YP_007487368.1| - 1.2e-09 37.8 0.2 2.4e-09 36.8 0.2 1.5 1 0 0 1 1 1 1 PrkA serine protein kinase C-terminal domain AAA_22 PF13401.1 gi|452207246|ref|YP_007487368.1| - 0.21 11.6 0.7 1.4 9.0 0.0 2.4 2 1 0 2 2 2 0 AAA domain PrkA PF06798.7 gi|452207247|ref|YP_007487369.1| - 7.2e-76 254.8 5.9 7.2e-76 254.8 4.1 2.5 2 0 0 2 2 2 1 PrkA serine protein kinase C-terminal domain AAA_PrkA PF08298.6 gi|452207247|ref|YP_007487369.1| - 8.1e-63 212.2 0.0 1.3e-62 211.6 0.0 1.3 1 0 0 1 1 1 1 PrkA AAA domain AAA_33 PF13671.1 gi|452207247|ref|YP_007487369.1| - 0.072 12.9 0.3 6.2 6.6 0.1 2.8 3 0 0 3 3 3 0 AAA domain dCMP_cyt_deam_1 PF00383.17 gi|452207249|ref|YP_007487371.1| - 2.6e-17 62.3 0.1 3.1e-17 62.1 0.1 1.1 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region dCMP_cyt_deam_2 PF08211.6 gi|452207249|ref|YP_007487371.1| - 1.2e-12 47.9 0.4 1.5e-12 47.5 0.3 1.1 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region MafB19-deam PF14437.1 gi|452207249|ref|YP_007487371.1| - 0.0022 17.6 0.5 0.0049 16.5 0.4 1.5 1 1 1 2 2 2 1 MafB19-like deaminase XOO_2897-deam PF14440.1 gi|452207249|ref|YP_007487371.1| - 0.061 13.0 0.0 0.081 12.6 0.0 1.2 1 0 0 1 1 1 0 Xanthomonas XOO_2897-like deaminase PNP_UDP_1 PF01048.15 gi|452207250|ref|YP_007487372.1| - 1.3e-45 155.1 3.6 1.7e-45 154.7 2.5 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily Pyr_redox_2 PF07992.9 gi|452207251|ref|YP_007487373.1| - 9.1e-17 61.5 0.0 3.1e-16 59.8 0.0 2.3 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|452207251|ref|YP_007487373.1| - 4e-08 33.5 0.4 8.1e-07 29.3 0.1 2.8 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|452207251|ref|YP_007487373.1| - 0.00063 19.8 0.2 0.17 11.9 0.0 2.9 3 1 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.16 gi|452207251|ref|YP_007487373.1| - 0.0012 18.4 0.1 2.2 7.8 0.0 2.9 3 0 0 3 3 3 2 Alanine dehydrogenase/PNT, C-terminal domain Hydantoinase_A PF01968.13 gi|452207251|ref|YP_007487373.1| - 0.043 12.9 0.3 0.11 11.5 0.0 1.8 3 0 0 3 3 3 0 Hydantoinase/oxoprolinase NAD_binding_9 PF13454.1 gi|452207251|ref|YP_007487373.1| - 0.083 12.6 0.3 21 4.8 0.0 3.3 3 0 0 3 3 3 0 FAD-NAD(P)-binding HrcA_DNA-bdg PF03444.10 gi|452207252|ref|YP_007487374.1| - 1.7e-38 129.9 0.1 2.4e-38 129.3 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Rrf2 PF02082.15 gi|452207252|ref|YP_007487374.1| - 9.7e-07 28.8 0.0 1.5e-06 28.1 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator HTH_11 PF08279.7 gi|452207252|ref|YP_007487374.1| - 1.7e-06 27.5 0.0 2.7e-06 26.9 0.0 1.3 1 0 0 1 1 1 1 HTH domain Phage_terminase PF10668.4 gi|452207252|ref|YP_007487374.1| - 0.0074 16.0 0.0 0.013 15.2 0.0 1.3 1 0 0 1 1 1 1 Phage terminase small subunit HTH_38 PF13936.1 gi|452207252|ref|YP_007487374.1| - 0.028 13.9 0.0 0.062 12.8 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain TrmB PF01978.14 gi|452207252|ref|YP_007487374.1| - 0.043 13.5 0.0 0.075 12.7 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|452207252|ref|YP_007487374.1| - 0.081 12.7 0.0 0.14 11.9 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain E1-E2_ATPase PF00122.15 gi|452207253|ref|YP_007487375.1| - 1e-43 149.0 0.7 1.5e-43 148.4 0.5 1.3 1 0 0 1 1 1 1 E1-E2 ATPase Hydrolase PF00702.21 gi|452207253|ref|YP_007487375.1| - 1.6e-36 126.7 1.3 3.5e-36 125.6 0.9 1.6 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|452207253|ref|YP_007487375.1| - 2.3e-08 34.4 0.0 5.7e-08 33.1 0.0 1.7 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.21 gi|452207253|ref|YP_007487375.1| - 8.1e-08 32.2 0.0 3.1e-07 30.4 0.0 2.1 2 0 0 2 2 2 1 Heavy-metal-associated domain Hydrolase_3 PF08282.7 gi|452207253|ref|YP_007487375.1| - 0.00013 21.6 0.0 0.00019 21.1 0.0 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase ATPase-cat_bd PF12156.3 gi|452207253|ref|YP_007487375.1| - 0.13 12.7 0.1 0.25 11.9 0.1 1.4 1 0 0 1 1 1 0 Putative metal-binding domain of cation transport ATPase SPC25 PF06703.6 gi|452207255|ref|YP_007487377.1| - 0.0086 15.6 0.0 0.0086 15.6 0.0 1.1 1 0 0 1 1 1 1 Microsomal signal peptidase 25 kDa subunit (SPC25) CoxIIa PF08113.6 gi|452207255|ref|YP_007487377.1| - 0.11 12.2 0.7 0.17 11.6 0.5 1.3 1 0 0 1 1 1 0 Cytochrome c oxidase subunit IIa family COX2 PF00116.15 gi|452207256|ref|YP_007487378.1| - 1.4e-22 79.7 0.3 1.8e-22 79.3 0.2 1.2 1 0 0 1 1 1 1 Cytochrome C oxidase subunit II, periplasmic domain Cupredoxin_1 PF13473.1 gi|452207256|ref|YP_007487378.1| - 1e-06 28.5 0.1 1.5e-06 28.0 0.1 1.2 1 0 0 1 1 1 1 Cupredoxin-like domain COX2-transmemb PF09125.5 gi|452207256|ref|YP_007487378.1| - 0.0065 15.9 0.8 0.011 15.2 0.5 1.2 1 0 0 1 1 1 1 Cytochrome C oxidase subunit II, transmembrane Copper-bind PF00127.15 gi|452207256|ref|YP_007487378.1| - 0.051 13.8 0.7 0.17 12.1 0.5 1.9 1 1 0 1 1 1 0 Copper binding proteins, plastocyanin/azurin family COX1 PF00115.15 gi|452207257|ref|YP_007487379.1| - 3.2e-67 227.0 59.1 3.2e-67 227.0 41.0 1.9 1 1 1 2 2 2 2 Cytochrome C and Quinol oxidase polypeptide I PgaD PF13994.1 gi|452207258|ref|YP_007487380.1| - 0.039 13.4 0.1 0.039 13.4 0.1 1.2 1 1 0 1 1 1 0 PgaD-like protein TspO_MBR PF03073.10 gi|452207259|ref|YP_007487381.1| - 1.2e-40 138.4 13.7 1.4e-40 138.2 9.5 1.0 1 0 0 1 1 1 1 TspO/MBR family SurE PF01975.12 gi|452207260|ref|YP_007487382.1| - 2.9e-47 160.5 0.1 3.6e-47 160.2 0.1 1.1 1 0 0 1 1 1 1 Survival protein SurE Cdc6_C PF09079.6 gi|452207262|ref|YP_007487384.1| - 2e-19 69.1 0.9 4.3e-19 68.0 0.1 2.0 2 0 0 2 2 1 1 CDC6, C terminal AAA_22 PF13401.1 gi|452207262|ref|YP_007487384.1| - 5.3e-11 42.7 0.0 2e-10 40.9 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|452207262|ref|YP_007487384.1| - 2.2e-09 37.5 1.0 3.8e-08 33.5 0.0 2.9 2 2 0 2 2 2 1 AAA ATPase domain AAA PF00004.24 gi|452207262|ref|YP_007487384.1| - 4.1e-06 27.0 0.0 0.0001 22.5 0.0 2.3 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Arch_ATPase PF01637.13 gi|452207262|ref|YP_007487384.1| - 0.00015 21.5 0.0 0.00025 20.8 0.0 1.3 1 0 0 1 1 1 1 Archaeal ATPase AAA_32 PF13654.1 gi|452207262|ref|YP_007487384.1| - 0.00027 19.7 0.4 0.33 9.5 0.0 2.2 2 0 0 2 2 2 2 AAA domain NB-ARC PF00931.17 gi|452207262|ref|YP_007487384.1| - 0.00044 19.1 0.0 0.00061 18.7 0.0 1.2 1 0 0 1 1 1 1 NB-ARC domain DUF815 PF05673.8 gi|452207262|ref|YP_007487384.1| - 0.00068 18.6 0.0 0.0011 17.9 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_25 PF13481.1 gi|452207262|ref|YP_007487384.1| - 0.0013 18.1 0.2 0.0079 15.6 0.0 2.3 3 1 0 3 3 3 1 AAA domain T2SE PF00437.15 gi|452207262|ref|YP_007487384.1| - 0.0016 17.4 0.0 0.0031 16.4 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_2 PF07724.9 gi|452207262|ref|YP_007487384.1| - 0.0016 18.3 0.0 0.0032 17.3 0.0 1.5 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) TrwB_AAD_bind PF10412.4 gi|452207262|ref|YP_007487384.1| - 0.018 13.7 0.0 0.061 11.9 0.0 1.8 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain DEAD PF00270.24 gi|452207262|ref|YP_007487384.1| - 0.02 14.3 0.3 1 8.8 0.0 2.2 1 1 1 2 2 2 0 DEAD/DEAH box helicase Sigma54_activat PF00158.21 gi|452207262|ref|YP_007487384.1| - 0.045 13.2 0.0 0.08 12.4 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain RNA_helicase PF00910.17 gi|452207262|ref|YP_007487384.1| - 0.057 13.6 0.0 0.11 12.6 0.0 1.5 1 0 0 1 1 1 0 RNA helicase Kinesin PF00225.18 gi|452207262|ref|YP_007487384.1| - 0.075 11.7 0.0 0.14 10.8 0.0 1.3 1 0 0 1 1 1 0 Kinesin motor domain PIF1 PF05970.9 gi|452207262|ref|YP_007487384.1| - 0.12 11.2 0.0 0.22 10.4 0.0 1.3 1 0 0 1 1 1 0 PIF1-like helicase DUF2075 PF09848.4 gi|452207262|ref|YP_007487384.1| - 0.12 11.2 0.0 0.18 10.7 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) ECH PF00378.15 gi|452207263|ref|YP_007487385.1| - 6.6e-47 159.7 0.0 8.1e-47 159.4 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family ECH_C PF13766.1 gi|452207263|ref|YP_007487385.1| - 0.12 12.4 0.2 0.27 11.3 0.1 1.5 1 0 0 1 1 1 0 2-enoyl-CoA Hydratase C-terminal region Thioredoxin_4 PF13462.1 gi|452207264|ref|YP_007487386.1| - 3.3e-31 108.4 0.0 3.8e-31 108.2 0.0 1.0 1 0 0 1 1 1 1 Thioredoxin DSBA PF01323.15 gi|452207264|ref|YP_007487386.1| - 7.5e-10 38.6 3.8 1.5e-07 31.1 2.6 2.1 1 1 0 1 1 1 1 DSBA-like thioredoxin domain Thioredoxin_2 PF13098.1 gi|452207264|ref|YP_007487386.1| - 2.1e-08 34.3 0.0 5.7e-08 32.9 0.0 1.6 1 1 0 1 1 1 1 Thioredoxin-like domain TAT_signal PF10518.4 gi|452207264|ref|YP_007487386.1| - 0.011 15.6 5.2 0.011 15.6 3.6 2.1 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence Thioredoxin_3 PF13192.1 gi|452207264|ref|YP_007487386.1| - 0.086 12.6 0.0 5 6.9 0.0 2.2 2 0 0 2 2 2 0 Thioredoxin domain Glyoxalase PF00903.20 gi|452207265|ref|YP_007487387.1| - 6.9e-25 87.4 0.0 1.5e-24 86.4 0.0 1.8 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_2 PF12681.2 gi|452207265|ref|YP_007487387.1| - 1.6e-09 38.2 1.4 0.00012 22.6 0.2 2.6 2 1 0 2 2 2 2 Glyoxalase-like domain Glyoxalase_4 PF13669.1 gi|452207265|ref|YP_007487387.1| - 3.3e-05 23.8 0.1 1.4 8.9 0.0 3.3 2 1 0 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily OrfB_IS605 PF01385.14 gi|452207267|ref|YP_007487389.1| - 2.9e-61 206.7 0.4 3.7e-61 206.4 0.3 1.1 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|452207267|ref|YP_007487389.1| - 3.9e-20 71.2 0.7 8.2e-20 70.2 0.5 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain KaiC PF06745.8 gi|452207268|ref|YP_007487390.1| - 6.2e-67 225.0 0.0 1.4e-32 112.6 0.0 2.1 2 0 0 2 2 2 2 KaiC AAA_25 PF13481.1 gi|452207268|ref|YP_007487390.1| - 1.5e-28 99.5 0.1 1.1e-13 51.0 0.0 2.9 2 1 1 3 3 3 2 AAA domain GvpD PF07088.6 gi|452207268|ref|YP_007487390.1| - 1.6e-07 30.0 3.3 5.5e-07 28.2 0.0 3.0 3 1 0 3 3 3 1 GvpD gas vesicle protein AAA_22 PF13401.1 gi|452207268|ref|YP_007487390.1| - 2.7e-07 30.7 0.0 0.0014 18.7 0.0 2.5 2 0 0 2 2 2 2 AAA domain DnaB_C PF03796.10 gi|452207268|ref|YP_007487390.1| - 5.8e-07 28.6 0.0 0.0022 16.9 0.0 2.6 2 1 1 3 3 3 2 DnaB-like helicase C terminal domain Rad51 PF08423.6 gi|452207268|ref|YP_007487390.1| - 3.3e-06 26.1 0.9 0.021 13.7 0.2 3.3 3 0 0 3 3 3 1 Rad51 DUF2075 PF09848.4 gi|452207268|ref|YP_007487390.1| - 2.2e-05 23.6 0.0 0.01 14.8 0.0 2.1 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) AAA_19 PF13245.1 gi|452207268|ref|YP_007487390.1| - 4.4e-05 23.1 3.3 0.098 12.4 0.3 2.7 2 0 0 2 2 2 2 Part of AAA domain AAA_14 PF13173.1 gi|452207268|ref|YP_007487390.1| - 5.5e-05 23.0 0.0 0.04 13.8 0.0 2.9 3 0 0 3 3 3 1 AAA domain AAA_16 PF13191.1 gi|452207268|ref|YP_007487390.1| - 0.0004 20.4 3.0 0.3 11.0 0.0 3.1 2 1 0 2 2 2 2 AAA ATPase domain RecA PF00154.16 gi|452207268|ref|YP_007487390.1| - 0.0013 17.9 0.5 0.0085 15.1 0.1 2.1 2 0 0 2 2 2 1 recA bacterial DNA recombination protein IstB_IS21 PF01695.12 gi|452207268|ref|YP_007487390.1| - 0.0048 16.3 0.3 0.14 11.6 0.0 2.4 3 0 0 3 3 2 1 IstB-like ATP binding protein CbiA PF01656.18 gi|452207268|ref|YP_007487390.1| - 0.0055 16.1 0.6 0.019 14.4 0.1 2.1 2 1 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain NTPase_1 PF03266.10 gi|452207268|ref|YP_007487390.1| - 0.0063 16.2 6.3 1.1 8.8 0.1 3.9 4 1 0 5 5 5 2 NTPase AAA PF00004.24 gi|452207268|ref|YP_007487390.1| - 0.0077 16.4 2.1 0.2 11.8 0.1 3.2 2 2 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) NACHT PF05729.7 gi|452207268|ref|YP_007487390.1| - 0.0081 15.8 0.1 2.8 7.5 0.0 2.6 3 0 0 3 3 2 1 NACHT domain T2SE PF00437.15 gi|452207268|ref|YP_007487390.1| - 0.0082 15.0 0.0 0.088 11.6 0.0 2.4 2 0 0 2 2 2 1 Type II/IV secretion system protein TrwB_AAD_bind PF10412.4 gi|452207268|ref|YP_007487390.1| - 0.009 14.6 0.1 0.39 9.2 0.0 2.2 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain Arch_ATPase PF01637.13 gi|452207268|ref|YP_007487390.1| - 0.012 15.3 0.0 0.057 13.0 0.0 2.0 2 0 0 2 2 2 0 Archaeal ATPase AAA_11 PF13086.1 gi|452207268|ref|YP_007487390.1| - 0.028 13.9 0.0 0.9 9.0 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.1 gi|452207268|ref|YP_007487390.1| - 0.036 13.6 0.3 1.5 8.3 0.0 2.4 2 0 0 2 2 2 0 AAA domain AAA_10 PF12846.2 gi|452207268|ref|YP_007487390.1| - 0.08 12.3 0.5 0.96 8.8 0.0 2.3 2 2 0 2 2 2 0 AAA-like domain ResIII PF04851.10 gi|452207268|ref|YP_007487390.1| - 0.087 12.6 0.5 1.3 8.8 0.1 2.2 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit AAA_24 PF13479.1 gi|452207268|ref|YP_007487390.1| - 0.1 12.1 2.1 2.4 7.7 0.0 3.1 4 0 0 4 4 3 0 AAA domain UPF0079 PF02367.12 gi|452207268|ref|YP_007487390.1| - 0.11 12.1 1.3 6.5 6.3 0.2 2.4 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 FtsK_SpoIIIE PF01580.13 gi|452207268|ref|YP_007487390.1| - 0.14 11.5 0.5 2.3 7.6 0.0 2.7 3 0 0 3 3 3 0 FtsK/SpoIIIE family PAXNEB PF05625.6 gi|452207268|ref|YP_007487390.1| - 0.22 10.2 3.0 0.22 10.3 0.8 1.8 2 0 0 2 2 2 0 PAXNEB protein AAA_18 PF13238.1 gi|452207268|ref|YP_007487390.1| - 0.27 11.5 2.9 0.83 9.9 0.3 2.6 3 1 0 3 3 2 0 AAA domain AAA_29 PF13555.1 gi|452207268|ref|YP_007487390.1| - 0.68 9.5 6.5 13 5.3 1.9 3.1 3 0 0 3 3 3 0 P-loop containing region of AAA domain ABC_tran PF00005.22 gi|452207268|ref|YP_007487390.1| - 1.1 9.5 2.8 3.8 7.8 0.8 2.4 2 1 0 2 2 2 0 ABC transporter AAA_17 PF13207.1 gi|452207268|ref|YP_007487390.1| - 2.7 8.8 6.8 40 5.0 2.3 3.1 3 1 0 3 3 2 0 AAA domain PAS_9 PF13426.1 gi|452207269|ref|YP_007487391.1| - 6.1e-35 119.7 0.1 9.5e-21 74.1 0.0 2.8 3 0 0 3 3 3 2 PAS domain PAS PF00989.19 gi|452207269|ref|YP_007487391.1| - 1.5e-27 95.5 0.0 7.2e-16 57.9 0.0 2.5 2 0 0 2 2 2 2 PAS fold PAS_4 PF08448.5 gi|452207269|ref|YP_007487391.1| - 8.2e-25 86.9 0.8 3e-11 43.3 0.0 2.7 2 0 0 2 2 2 2 PAS fold HATPase_c PF02518.21 gi|452207269|ref|YP_007487391.1| - 5.1e-19 68.0 0.0 1.1e-18 66.9 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.1 gi|452207269|ref|YP_007487391.1| - 1.8e-15 56.1 0.0 2.5e-07 30.3 0.0 2.8 2 0 0 2 2 2 2 PAS domain PAS_3 PF08447.6 gi|452207269|ref|YP_007487391.1| - 1.3e-08 34.8 0.1 1.9e-06 27.8 0.0 2.8 2 0 0 2 2 2 1 PAS fold HATPase_c_2 PF13581.1 gi|452207269|ref|YP_007487391.1| - 1.4e-08 34.6 0.1 5.4e-08 32.6 0.1 2.1 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain PAS_7 PF12860.2 gi|452207269|ref|YP_007487391.1| - 0.00048 20.1 0.4 0.68 9.9 0.0 5.0 3 2 2 5 5 5 1 PAS fold HATPase_c_3 PF13589.1 gi|452207269|ref|YP_007487391.1| - 0.0014 18.2 0.0 0.003 17.2 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|452207269|ref|YP_007487391.1| - 0.0063 16.4 3.2 0.0074 16.2 0.2 2.6 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain Phage_integrase PF00589.17 gi|452207270|ref|YP_007487392.1| - 3.5e-19 69.1 0.0 5.8e-19 68.4 0.0 1.4 1 0 0 1 1 1 1 Phage integrase family DZR PF12773.2 gi|452207270|ref|YP_007487392.1| - 0.0014 18.3 0.7 0.0033 17.1 0.5 1.6 1 0 0 1 1 1 1 Double zinc ribbon Auto_anti-p27 PF06677.7 gi|452207270|ref|YP_007487392.1| - 0.003 17.2 2.9 0.0063 16.2 2.0 1.5 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DUF3435 PF11917.3 gi|452207270|ref|YP_007487392.1| - 0.02 13.6 0.1 3.9 6.0 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3435) Zn_ribbon_2 PF12674.2 gi|452207270|ref|YP_007487392.1| - 0.094 13.0 0.1 2 8.8 0.0 2.9 2 0 0 2 2 2 0 Putative zinc ribbon domain CO_deh_flav_C PF03450.12 gi|452207270|ref|YP_007487392.1| - 0.12 12.3 0.1 0.35 10.8 0.0 1.8 2 0 0 2 2 2 0 CO dehydrogenase flavoprotein C-terminal domain zinc-ribbons_6 PF07191.7 gi|452207270|ref|YP_007487392.1| - 0.12 12.1 1.8 0.25 11.1 1.2 1.4 1 0 0 1 1 1 0 zinc-ribbons zf-IS66 PF13005.2 gi|452207270|ref|YP_007487392.1| - 0.28 11.1 4.2 3.9 7.5 0.1 2.8 2 1 1 3 3 3 0 zinc-finger binding domain of transposase IS66 zf-Mss51 PF13824.1 gi|452207270|ref|YP_007487392.1| - 0.69 9.8 8.4 0.25 11.2 1.9 3.3 3 1 0 3 3 3 0 Zinc-finger of mitochondrial splicing suppressor 51 DNA_ligase_ZBD PF03119.11 gi|452207270|ref|YP_007487392.1| - 1.3 8.7 6.9 8.8 6.1 0.2 2.8 3 0 0 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain FYDLN_acid PF09538.5 gi|452207270|ref|YP_007487392.1| - 2.6 8.6 9.3 0.15 12.6 1.3 2.5 2 0 0 2 2 2 0 Protein of unknown function (FYDLN_acid) zf-ribbon_3 PF13248.1 gi|452207270|ref|YP_007487392.1| - 3.1 7.1 7.7 50 3.2 5.3 2.4 1 1 1 2 2 2 0 zinc-ribbon domain DDE_Tnp_1 PF01609.16 gi|452207271|ref|YP_007487393.1| - 7.2e-10 38.7 1.2 1.1e-09 38.1 0.8 1.4 1 0 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.6 gi|452207271|ref|YP_007487393.1| - 0.00023 20.9 0.1 0.0012 18.6 0.0 2.4 2 0 0 2 2 2 1 Transposase domain (DUF772) DDE_Tnp_1_2 PF13586.1 gi|452207271|ref|YP_007487393.1| - 0.088 13.0 0.3 0.3 11.3 0.1 2.1 2 0 0 2 2 2 0 Transposase DDE domain NicO PF03824.11 gi|452207272|ref|YP_007487394.1| - 1.3e-05 24.7 18.3 6.6e-05 22.3 12.7 2.2 1 1 0 1 1 1 1 High-affinity nickel-transport protein Phage_holin_2 PF04550.7 gi|452207272|ref|YP_007487394.1| - 1.6 8.8 7.9 0.9 9.6 0.7 2.8 3 0 0 3 3 3 0 Phage holin family 2 NikR_C PF08753.6 gi|452207273|ref|YP_007487395.1| - 1.6e-12 47.1 0.4 2.5e-12 46.4 0.3 1.4 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_1 PF01402.16 gi|452207273|ref|YP_007487395.1| - 0.013 15.3 0.0 0.026 14.3 0.0 1.5 1 0 0 1 1 1 0 Ribbon-helix-helix protein, copG family DUF2191 PF09957.4 gi|452207273|ref|YP_007487395.1| - 0.036 13.8 0.0 0.099 12.4 0.0 1.7 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2191) PSK_trans_fac PF07704.6 gi|452207273|ref|YP_007487395.1| - 0.047 14.3 0.1 0.08 13.6 0.1 1.4 1 1 0 1 1 1 0 Rv0623-like transcription factor CbiA PF01656.18 gi|452207276|ref|YP_007487398.1| - 2.6e-23 82.4 0.0 3.3e-23 82.1 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|452207276|ref|YP_007487398.1| - 3.3e-07 30.3 0.0 2.5e-06 27.5 0.0 2.2 1 1 0 1 1 1 1 AAA domain MipZ PF09140.6 gi|452207276|ref|YP_007487398.1| - 8.6e-06 25.0 0.0 0.00034 19.7 0.0 2.3 2 0 0 2 2 2 1 ATPase MipZ ATP_bind_1 PF03029.12 gi|452207276|ref|YP_007487398.1| - 0.0001 21.9 0.0 0.00016 21.2 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein ArsA_ATPase PF02374.10 gi|452207276|ref|YP_007487398.1| - 0.00021 20.4 0.1 0.00041 19.4 0.1 1.7 1 1 0 1 1 1 1 Anion-transporting ATPase YhjQ PF06564.7 gi|452207276|ref|YP_007487398.1| - 0.0037 16.6 0.0 0.0089 15.4 0.0 1.8 1 1 0 1 1 1 1 YhjQ protein AAA_10 PF12846.2 gi|452207276|ref|YP_007487398.1| - 0.0054 16.2 0.0 0.0055 16.1 0.0 1.3 1 1 0 1 1 1 1 AAA-like domain AAA_17 PF13207.1 gi|452207276|ref|YP_007487398.1| - 0.0087 16.8 0.0 0.023 15.5 0.0 2.0 1 1 0 1 1 1 1 AAA domain Fer4_NifH PF00142.13 gi|452207276|ref|YP_007487398.1| - 0.018 14.2 0.0 0.028 13.6 0.0 1.2 1 0 0 1 1 1 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_16 PF13191.1 gi|452207276|ref|YP_007487398.1| - 0.023 14.6 0.0 0.039 13.9 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain AAA_25 PF13481.1 gi|452207276|ref|YP_007487398.1| - 0.027 13.8 0.0 0.053 12.9 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|452207276|ref|YP_007487398.1| - 0.069 13.4 0.1 0.31 11.3 0.0 2.2 2 1 0 2 2 2 0 AAA domain AAA_24 PF13479.1 gi|452207276|ref|YP_007487398.1| - 0.28 10.7 1.5 4 6.9 0.7 2.6 2 1 0 2 2 2 0 AAA domain Got1 PF04178.7 gi|452207277|ref|YP_007487399.1| - 1.2 9.3 10.8 1.4 9.0 7.5 1.2 1 0 0 1 1 1 0 Got1/Sft2-like family DUF3017 PF11222.3 gi|452207277|ref|YP_007487399.1| - 1.7 8.5 9.3 0.059 13.1 1.3 2.4 2 1 1 3 3 3 0 Protein of unknown function (DUF3017) CAAD PF14159.1 gi|452207277|ref|YP_007487399.1| - 1.8 8.2 6.1 0.84 9.3 1.9 2.0 1 1 1 2 2 2 0 CAAD domains of cyanobacterial aminoacyl-tRNA synthetase DUF4491 PF14898.1 gi|452207277|ref|YP_007487399.1| - 5.8 7.1 7.2 4.7 7.4 3.1 2.0 1 1 2 3 3 3 0 Domain of unknown function (DUF4491) IMS PF00817.15 gi|452207278|ref|YP_007487400.1| - 1.6e-40 138.3 0.0 3.2e-40 137.3 0.0 1.5 1 0 0 1 1 1 1 impB/mucB/samB family IMS_C PF11799.3 gi|452207278|ref|YP_007487400.1| - 4.8e-18 65.3 0.0 1.1e-17 64.1 0.0 1.6 2 0 0 2 2 2 1 impB/mucB/samB family C-terminal domain IMS_HHH PF11798.3 gi|452207278|ref|YP_007487400.1| - 2.8e-07 30.2 0.0 6.3e-07 29.0 0.0 1.7 1 0 0 1 1 1 1 IMS family HHH motif HHH_5 PF14520.1 gi|452207278|ref|YP_007487400.1| - 1e-05 25.5 0.0 2.5e-05 24.3 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix domain DUF4332 PF14229.1 gi|452207278|ref|YP_007487400.1| - 0.002 18.0 0.0 0.0046 16.9 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4332) DNA_pol_lambd_f PF10391.4 gi|452207278|ref|YP_007487400.1| - 0.003 17.0 0.0 0.0065 16.0 0.0 1.5 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda DUF1805 PF08827.6 gi|452207278|ref|YP_007487400.1| - 0.012 15.3 0.0 0.044 13.5 0.0 1.9 1 0 0 1 1 1 0 Domain of unknown function (DUF1805) HHH PF00633.18 gi|452207278|ref|YP_007487400.1| - 0.033 13.8 0.5 0.14 11.8 0.0 2.3 3 0 0 3 3 3 0 Helix-hairpin-helix motif Cdd1 PF11731.3 gi|452207278|ref|YP_007487400.1| - 0.18 11.7 0.0 0.34 10.8 0.0 1.4 1 0 0 1 1 1 0 Pathogenicity locus DUF4367 PF14285.1 gi|452207279|ref|YP_007487401.1| - 0.13 11.5 0.3 0.16 11.2 0.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4367) FANCL_C PF11793.3 gi|452207280|ref|YP_007487402.1| - 0.0091 15.9 0.8 0.2 11.6 0.1 2.0 2 0 0 2 2 2 1 FANCL C-terminal domain DZR PF12773.2 gi|452207280|ref|YP_007487402.1| - 0.022 14.5 0.7 0.035 13.9 0.5 1.3 1 1 0 1 1 1 0 Double zinc ribbon zinc-ribbons_6 PF07191.7 gi|452207280|ref|YP_007487402.1| - 0.029 14.1 0.4 0.043 13.6 0.2 1.2 1 0 0 1 1 1 0 zinc-ribbons Lar_restr_allev PF14354.1 gi|452207280|ref|YP_007487402.1| - 0.034 14.4 1.9 0.054 13.7 1.3 1.4 1 1 0 1 1 1 0 Restriction alleviation protein Lar zf-C3HC4_3 PF13920.1 gi|452207280|ref|YP_007487402.1| - 0.046 13.3 0.8 1.8 8.2 0.1 2.0 2 0 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) ATPase-cat_bd PF12156.3 gi|452207280|ref|YP_007487402.1| - 0.051 14.1 0.2 0.057 13.9 0.2 1.1 1 0 0 1 1 1 0 Putative metal-binding domain of cation transport ATPase zf-TFIIB PF13453.1 gi|452207280|ref|YP_007487402.1| - 0.088 12.0 0.9 0.13 11.4 0.6 1.3 1 1 0 1 1 1 0 Transcription factor zinc-finger zf-Mss51 PF13824.1 gi|452207280|ref|YP_007487402.1| - 0.098 12.5 0.7 0.14 11.9 0.5 1.3 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 Zn-ribbon_8 PF09723.5 gi|452207280|ref|YP_007487402.1| - 0.1 12.5 0.7 12 5.9 0.1 2.1 2 0 0 2 2 2 0 Zinc ribbon domain Terminase_GpA PF05876.7 gi|452207280|ref|YP_007487402.1| - 0.1 10.8 0.2 0.12 10.7 0.2 1.0 1 0 0 1 1 1 0 Phage terminase large subunit (GpA) VP_N-CPKC PF11475.3 gi|452207280|ref|YP_007487402.1| - 0.15 11.6 0.7 2.1 7.9 0.0 2.1 2 0 0 2 2 2 0 Virion protein N terminal domain ADK_lid PF05191.9 gi|452207280|ref|YP_007487402.1| - 0.28 10.8 2.6 0.41 10.3 0.1 2.0 2 0 0 2 2 2 0 Adenylate kinase, active site lid zf-Di19 PF05605.7 gi|452207280|ref|YP_007487402.1| - 0.29 11.3 2.5 0.52 10.4 1.8 1.4 1 1 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding zf-RING_3 PF14369.1 gi|452207280|ref|YP_007487402.1| - 0.43 10.6 2.4 3.7 7.6 0.1 2.1 2 0 0 2 2 2 0 zinc-finger Cys_rich_CPXG PF14255.1 gi|452207280|ref|YP_007487402.1| - 0.45 10.3 3.4 0.75 9.6 2.4 1.3 1 1 0 1 1 1 0 Cysteine-rich CPXCG GAGA PF09237.6 gi|452207280|ref|YP_007487402.1| - 0.47 10.0 2.4 0.48 10.0 0.5 1.8 1 1 1 2 2 2 0 GAGA factor zinc_ribbon_2 PF13240.1 gi|452207280|ref|YP_007487402.1| - 0.83 9.2 3.1 2 7.9 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain UPF0547 PF10571.4 gi|452207280|ref|YP_007487402.1| - 0.95 9.2 7.1 6.8 6.4 0.4 2.1 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-ribbon_3 PF13248.1 gi|452207280|ref|YP_007487402.1| - 7.2 5.9 6.3 42 3.5 4.4 2.0 1 1 0 1 1 1 0 zinc-ribbon domain DDE_Tnp_1 PF01609.16 gi|452207283|ref|YP_007487405.1| - 3.6e-14 52.8 0.9 6.8e-14 51.9 0.6 1.4 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_2 PF13586.1 gi|452207283|ref|YP_007487405.1| - 0.0012 18.9 0.1 0.0024 18.0 0.0 1.5 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_6 PF13751.1 gi|452207283|ref|YP_007487405.1| - 0.0044 17.0 0.0 0.0072 16.3 0.0 1.4 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.1 gi|452207283|ref|YP_007487405.1| - 0.035 13.8 0.0 0.059 13.1 0.0 1.3 1 0 0 1 1 1 0 Transposase DDE domain RHSP PF07999.6 gi|452207283|ref|YP_007487405.1| - 0.078 11.5 0.0 0.11 11.0 0.0 1.2 1 0 0 1 1 1 0 Retrotransposon hot spot protein TBP PF00352.16 gi|452207285|ref|YP_007487407.1| - 1.5e-61 203.7 0.0 5.2e-30 102.6 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.3 gi|452207285|ref|YP_007487407.1| - 0.00012 22.0 0.0 0.15 12.1 0.0 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) Glutaminase PF04960.10 gi|452207285|ref|YP_007487407.1| - 0.036 13.0 0.0 0.046 12.7 0.0 1.1 1 0 0 1 1 1 0 Glutaminase CENP-F_C_Rb_bdg PF10490.4 gi|452207285|ref|YP_007487407.1| - 0.18 11.1 0.4 8.7 5.7 0.2 2.2 2 0 0 2 2 2 0 Rb-binding domain of kinetochore protein Cenp-F/LEK1 DDE_Tnp_IS66 PF03050.9 gi|452207287|ref|YP_007487409.1| - 5.4e-54 183.2 0.2 9.5e-54 182.4 0.1 1.4 1 0 0 1 1 1 1 Transposase IS66 family zf-IS66 PF13005.2 gi|452207287|ref|YP_007487409.1| - 0.0003 20.7 7.3 0.0009 19.1 5.1 1.9 1 0 0 1 1 1 1 zinc-finger binding domain of transposase IS66 Transposase_mut PF00872.13 gi|452207287|ref|YP_007487409.1| - 0.018 13.6 0.0 0.034 12.6 0.0 1.4 1 0 0 1 1 1 0 Transposase, Mutator family DDE_Tnp_IS240 PF13610.1 gi|452207287|ref|YP_007487409.1| - 0.1 12.5 0.2 0.32 10.9 0.1 1.9 1 1 0 1 1 1 0 DDE domain DivIC PF04977.10 gi|452207287|ref|YP_007487409.1| - 0.12 11.9 0.1 0.12 11.9 0.1 2.2 3 0 0 3 3 3 0 Septum formation initiator DUF972 PF06156.8 gi|452207287|ref|YP_007487409.1| - 0.12 12.7 3.2 0.11 12.8 0.8 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF972) NYD-SP28_assoc PF14775.1 gi|452207287|ref|YP_007487409.1| - 0.14 11.8 2.3 0.45 10.2 1.6 1.9 1 0 0 1 1 1 0 Sperm tail C-terminal domain HALZ PF02183.13 gi|452207287|ref|YP_007487409.1| - 1.2 8.9 6.1 1.8 8.3 2.6 2.3 2 0 0 2 2 2 0 Homeobox associated leucine zipper DDE_3 PF13358.1 gi|452207288|ref|YP_007487410.1| - 2.6e-22 79.1 0.0 4.7e-22 78.3 0.0 1.4 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_33 PF13592.1 gi|452207288|ref|YP_007487410.1| - 4.9e-17 61.2 1.4 4.8e-16 58.0 0.1 3.1 4 0 0 4 4 4 1 Winged helix-turn helix HTH_29 PF13551.1 gi|452207288|ref|YP_007487410.1| - 1.3e-15 57.4 0.0 3.3e-15 56.1 0.0 1.7 2 0 0 2 2 2 1 Winged helix-turn helix HTH_32 PF13565.1 gi|452207288|ref|YP_007487410.1| - 8.1e-09 36.1 2.5 6.3e-08 33.3 0.2 3.3 2 1 1 3 3 3 1 Homeodomain-like domain HTH_23 PF13384.1 gi|452207288|ref|YP_007487410.1| - 1.9e-06 27.3 0.2 6e-06 25.7 0.0 1.9 2 0 0 2 2 2 1 Homeodomain-like domain rve PF00665.21 gi|452207288|ref|YP_007487410.1| - 5.1e-05 23.3 0.0 0.00053 20.0 0.0 2.3 2 0 0 2 2 2 1 Integrase core domain HTH_28 PF13518.1 gi|452207288|ref|YP_007487410.1| - 0.0002 21.2 0.0 0.0011 18.8 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_Tnp_1 PF01527.15 gi|452207288|ref|YP_007487410.1| - 0.00059 19.7 0.0 0.0012 18.7 0.0 1.5 1 0 0 1 1 1 1 Transposase HTH_38 PF13936.1 gi|452207288|ref|YP_007487410.1| - 0.0061 16.0 0.0 0.03 13.8 0.0 2.2 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_30 PF13556.1 gi|452207288|ref|YP_007487410.1| - 0.013 15.1 0.0 0.026 14.1 0.0 1.4 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain DDE_1 PF03184.14 gi|452207288|ref|YP_007487410.1| - 0.038 13.1 0.0 0.094 11.8 0.0 1.6 1 0 0 1 1 1 0 DDE superfamily endonuclease DDE_Tnp_ISAZ013 PF07592.6 gi|452207288|ref|YP_007487410.1| - 0.058 12.1 0.0 7.7 5.1 0.0 2.2 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain HTH_21 PF13276.1 gi|452207288|ref|YP_007487410.1| - 0.074 13.0 0.0 0.18 11.8 0.0 1.5 1 0 0 1 1 1 0 HTH-like domain Sigma70_r4_2 PF08281.7 gi|452207288|ref|YP_007487410.1| - 0.12 11.8 0.0 0.32 10.5 0.0 1.7 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_Tnp_ISL3 PF13542.1 gi|452207288|ref|YP_007487410.1| - 0.13 11.5 0.0 0.91 8.7 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 MarR PF01047.17 gi|452207288|ref|YP_007487410.1| - 0.14 11.8 0.0 0.61 9.8 0.0 2.0 2 0 0 2 2 2 0 MarR family TBP PF00352.16 gi|452207289|ref|YP_007487411.1| - 1.9e-59 196.9 0.0 1.2e-29 101.4 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.3 gi|452207289|ref|YP_007487411.1| - 0.00031 20.7 0.0 0.41 10.7 0.0 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) Cdc6_C PF09079.6 gi|452207290|ref|YP_007487412.1| - 1.1e-18 66.7 0.0 2e-18 65.8 0.0 1.5 1 0 0 1 1 1 1 CDC6, C terminal AAA_16 PF13191.1 gi|452207290|ref|YP_007487412.1| - 1.8e-09 37.8 2.0 3.4e-09 36.9 1.4 1.5 1 1 0 1 1 1 1 AAA ATPase domain Sigma54_activat PF00158.21 gi|452207290|ref|YP_007487412.1| - 0.00094 18.6 0.0 0.0015 17.9 0.0 1.3 1 0 0 1 1 1 1 Sigma-54 interaction domain DUF815 PF05673.8 gi|452207290|ref|YP_007487412.1| - 0.0039 16.1 0.0 0.006 15.5 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_22 PF13401.1 gi|452207290|ref|YP_007487412.1| - 0.0039 17.3 0.1 0.009 16.1 0.0 1.5 1 1 0 1 1 1 1 AAA domain DUF2075 PF09848.4 gi|452207290|ref|YP_007487412.1| - 0.013 14.4 0.1 0.019 13.9 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) IstB_IS21 PF01695.12 gi|452207290|ref|YP_007487412.1| - 0.046 13.1 0.0 0.1 12.0 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein DAP3 PF10236.4 gi|452207290|ref|YP_007487412.1| - 0.051 12.5 0.0 0.076 11.9 0.0 1.2 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 PhoH PF02562.11 gi|452207290|ref|YP_007487412.1| - 0.054 12.7 0.0 0.095 11.9 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein AAA_18 PF13238.1 gi|452207290|ref|YP_007487412.1| - 0.061 13.6 0.1 2.3 8.5 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.1 gi|452207290|ref|YP_007487412.1| - 0.076 12.7 0.0 0.29 10.9 0.0 2.0 1 0 0 1 1 1 0 Part of AAA domain DUF2791 PF10923.3 gi|452207290|ref|YP_007487412.1| - 0.078 11.5 0.0 0.11 11.0 0.0 1.2 1 0 0 1 1 1 0 P-loop Domain of unknown function (DUF2791) AAA_5 PF07728.9 gi|452207290|ref|YP_007487412.1| - 0.078 12.6 0.1 0.34 10.6 0.0 2.0 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) DUF21 PF01595.15 gi|452207291|ref|YP_007487413.1| - 1.4e-25 89.6 0.1 1.8e-25 89.3 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF21 Pyr_redox PF00070.22 gi|452207292|ref|YP_007487414.1| - 0.00016 21.9 0.0 0.25 11.7 0.0 2.5 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|452207292|ref|YP_007487414.1| - 0.0017 17.4 0.0 0.13 11.2 0.0 2.2 2 0 0 2 2 2 2 FAD binding domain Pyr_redox_2 PF07992.9 gi|452207292|ref|YP_007487414.1| - 0.03 14.2 0.1 0.95 9.3 0.0 2.6 2 1 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|452207292|ref|YP_007487414.1| - 0.11 12.5 0.0 0.35 10.9 0.0 1.9 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.1 gi|452207292|ref|YP_007487414.1| - 0.12 12.3 0.0 1.6 8.7 0.0 2.2 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase CoiA PF06054.6 gi|452207294|ref|YP_007487416.1| - 0.00016 20.6 0.1 0.00058 18.8 0.0 1.8 1 1 0 1 1 1 1 Competence protein CoiA-like family UPF0066 PF01980.11 gi|452207295|ref|YP_007487417.1| - 1.7e-39 134.4 0.0 2.1e-39 134.2 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0066 DUF202 PF02656.10 gi|452207297|ref|YP_007487419.1| - 3.8 7.8 6.7 0.42 10.8 0.1 2.7 3 1 0 3 3 3 0 Domain of unknown function (DUF202) PQQ_2 PF13360.1 gi|452207298|ref|YP_007487420.1| - 2.7e-56 190.6 26.6 1.3e-24 86.9 2.7 3.9 1 1 2 3 3 3 3 PQQ-like domain PQQ_3 PF13570.1 gi|452207298|ref|YP_007487420.1| - 4.2e-39 131.7 36.1 3.4e-07 30.2 0.2 8.9 9 0 0 9 9 9 7 PQQ-like domain Pkinase PF00069.20 gi|452207298|ref|YP_007487420.1| - 1.4e-35 122.7 0.0 2e-35 122.2 0.0 1.2 1 0 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.12 gi|452207298|ref|YP_007487420.1| - 2.3e-24 85.8 0.0 3.3e-24 85.3 0.0 1.1 1 0 0 1 1 1 1 Protein tyrosine kinase PQQ PF01011.16 gi|452207298|ref|YP_007487420.1| - 7.1e-20 69.4 15.3 0.0018 17.6 0.0 6.8 7 0 0 7 7 7 6 PQQ enzyme repeat APH PF01636.18 gi|452207298|ref|YP_007487420.1| - 0.0093 15.7 0.4 0.041 13.6 0.0 2.1 2 1 1 3 3 3 1 Phosphotransferase enzyme family TAT_signal PF10518.4 gi|452207298|ref|YP_007487420.1| - 0.04 13.9 0.3 0.04 13.9 0.2 2.3 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence UCR_Fe-S_N PF10399.4 gi|452207298|ref|YP_007487420.1| - 0.089 11.9 2.1 0.25 10.5 1.4 1.8 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal PQQ_3 PF13570.1 gi|452207299|ref|YP_007487421.1| - 2.2e-79 259.7 30.7 2.2e-10 40.4 0.0 8.5 8 0 0 8 8 8 8 PQQ-like domain PQQ_2 PF13360.1 gi|452207299|ref|YP_007487421.1| - 8.9e-66 221.7 26.4 2.1e-25 89.5 2.8 4.1 1 1 3 4 4 4 4 PQQ-like domain PQQ PF01011.16 gi|452207299|ref|YP_007487421.1| - 7.9e-64 208.2 9.5 1.4e-08 33.8 0.0 8.7 8 0 0 8 8 8 8 PQQ enzyme repeat Pkinase PF00069.20 gi|452207300|ref|YP_007487422.1| - 1.4e-09 37.5 0.0 1.8e-08 33.8 0.0 2.1 1 1 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.12 gi|452207300|ref|YP_007487422.1| - 2.7e-06 26.6 0.0 7.2e-06 25.2 0.0 1.6 1 1 0 1 1 1 1 Protein tyrosine kinase HSP70 PF00012.15 gi|452207301|ref|YP_007487423.1| - 1.3e-189 630.9 9.2 3.8e-187 622.8 6.4 2.3 1 1 0 1 1 1 1 Hsp70 protein Pkinase PF00069.20 gi|452207301|ref|YP_007487423.1| - 4.4e-34 117.8 0.0 7.9e-34 116.9 0.0 1.4 1 0 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.12 gi|452207301|ref|YP_007487423.1| - 1.3e-21 76.8 0.0 2.2e-21 76.0 0.0 1.3 1 0 0 1 1 1 1 Protein tyrosine kinase MreB_Mbl PF06723.8 gi|452207301|ref|YP_007487423.1| - 4.1e-19 68.3 1.0 4.3e-18 64.9 0.7 2.2 1 1 0 1 1 1 1 MreB/Mbl protein GrpE PF01025.14 gi|452207301|ref|YP_007487423.1| - 3e-08 33.3 0.4 9.8e-08 31.7 0.3 2.0 1 0 0 1 1 1 1 GrpE HATPase_c_2 PF13581.1 gi|452207301|ref|YP_007487423.1| - 0.0013 18.5 0.5 0.1 12.3 0.0 3.8 5 0 0 5 5 5 1 Histidine kinase-like ATPase domain FtsA PF14450.1 gi|452207301|ref|YP_007487423.1| - 0.0013 18.5 0.3 1.7 8.5 0.1 3.3 2 1 1 3 3 3 2 Cell division protein FtsA Hydantoinase_A PF01968.13 gi|452207301|ref|YP_007487423.1| - 0.0031 16.6 1.6 0.67 8.9 0.0 3.1 3 0 0 3 3 3 1 Hydantoinase/oxoprolinase Kdo PF06293.9 gi|452207301|ref|YP_007487423.1| - 0.0052 15.8 0.0 0.011 14.8 0.0 1.4 1 0 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family Pkinase PF00069.20 gi|452207302|ref|YP_007487424.1| - 7.4e-33 113.7 0.0 1.4e-32 112.8 0.0 1.5 1 0 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.12 gi|452207302|ref|YP_007487424.1| - 7.3e-18 64.5 0.0 1.9e-17 63.1 0.0 1.6 2 0 0 2 2 2 1 Protein tyrosine kinase TPR_2 PF07719.12 gi|452207302|ref|YP_007487424.1| - 1.5e-11 43.2 17.1 0.2 11.6 0.2 8.1 7 0 0 7 7 7 4 Tetratricopeptide repeat TPR_11 PF13414.1 gi|452207302|ref|YP_007487424.1| - 1.5e-09 37.3 19.2 0.18 11.4 0.2 7.4 7 0 0 7 7 7 4 TPR repeat TPR_16 PF13432.1 gi|452207302|ref|YP_007487424.1| - 3.6e-08 33.8 22.3 0.65 10.7 0.3 8.2 7 0 0 7 7 7 3 Tetratricopeptide repeat TPR_1 PF00515.23 gi|452207302|ref|YP_007487424.1| - 2.1e-06 27.0 11.1 0.37 10.4 0.0 6.8 6 1 1 7 7 7 1 Tetratricopeptide repeat TPR_12 PF13424.1 gi|452207302|ref|YP_007487424.1| - 0.00014 21.7 21.8 0.28 11.1 0.8 7.1 7 1 0 7 7 7 2 Tetratricopeptide repeat Lumazine_bd PF12870.2 gi|452207302|ref|YP_007487424.1| - 0.0016 18.4 8.8 0.68 10.0 0.0 5.0 4 1 1 5 5 5 2 Lumazine-binding domain HemY_N PF07219.8 gi|452207302|ref|YP_007487424.1| - 0.0031 17.0 8.2 4.1 7.0 0.2 6.1 7 0 0 7 7 6 1 HemY protein N-terminus TPR_19 PF14559.1 gi|452207302|ref|YP_007487424.1| - 0.005 17.1 13.8 6 7.2 0.4 6.8 7 0 0 7 7 7 1 Tetratricopeptide repeat Imm43 PF15602.1 gi|452207302|ref|YP_007487424.1| - 0.0064 16.4 0.2 0.24 11.3 0.0 3.3 1 1 1 2 2 2 1 Immunity protein 43 PTS_IIA PF02255.11 gi|452207302|ref|YP_007487424.1| - 0.016 15.0 15.6 2.3 8.1 0.2 5.7 6 0 0 6 6 6 0 PTS system, Lactose/Cellobiose specific IIA subunit RPN7 PF10602.4 gi|452207302|ref|YP_007487424.1| - 0.023 14.0 9.2 0.14 11.5 0.4 4.2 4 0 0 4 4 4 0 26S proteasome subunit RPN7 TPR_6 PF13174.1 gi|452207302|ref|YP_007487424.1| - 0.024 15.0 11.3 10 6.8 0.1 7.0 7 0 0 7 7 7 0 Tetratricopeptide repeat DUF4398 PF14346.1 gi|452207302|ref|YP_007487424.1| - 0.036 14.1 39.3 0.39 10.7 0.0 7.1 5 3 2 7 7 7 0 Domain of unknown function (DUF4398) TPR_14 PF13428.1 gi|452207302|ref|YP_007487424.1| - 0.05 14.2 19.3 2.5 8.9 0.1 8.3 8 1 0 8 8 8 0 Tetratricopeptide repeat YfdX PF10938.3 gi|452207302|ref|YP_007487424.1| - 0.076 12.6 16.6 1.3 8.6 2.0 4.9 3 2 2 5 5 5 0 YfdX protein DUF2450 PF10475.4 gi|452207302|ref|YP_007487424.1| - 0.25 10.2 4.0 4.3 6.1 0.0 3.4 3 1 1 4 4 4 0 Protein of unknown function N-terminal domain (DUF2450) YfiO PF13525.1 gi|452207302|ref|YP_007487424.1| - 0.33 10.4 15.1 1.8 7.9 0.2 6.1 7 1 0 7 7 7 0 Outer membrane lipoprotein Anti-adapt_IraP PF10796.4 gi|452207303|ref|YP_007487425.1| - 2.6e-06 27.7 7.7 0.0015 18.8 0.1 3.1 3 0 0 3 3 3 2 Sigma-S stabilisation anti-adaptor protein AAA_13 PF13166.1 gi|452207303|ref|YP_007487425.1| - 0.032 12.7 23.6 0.076 11.4 15.8 1.8 1 1 0 1 1 1 0 AAA domain Radical_SAM PF04055.16 gi|452207303|ref|YP_007487425.1| - 0.091 12.9 0.2 0.22 11.6 0.1 1.7 1 0 0 1 1 1 0 Radical SAM superfamily APG6 PF04111.7 gi|452207303|ref|YP_007487425.1| - 0.15 11.1 30.2 0.045 12.7 9.4 2.7 2 1 0 2 2 2 0 Autophagy protein Apg6 MscS_porin PF12795.2 gi|452207303|ref|YP_007487425.1| - 0.68 9.2 34.9 1.5 8.0 24.2 1.5 1 0 0 1 1 1 0 Mechanosensitive ion channel porin domain Reo_sigmaC PF04582.7 gi|452207303|ref|YP_007487425.1| - 0.95 8.5 8.6 0.65 9.1 1.4 2.4 1 1 1 2 2 2 0 Reovirus sigma C capsid protein TMF_TATA_bd PF12325.3 gi|452207303|ref|YP_007487425.1| - 1.1 9.0 35.1 1.1 9.0 7.2 3.9 2 1 1 3 3 3 0 TATA element modulatory factor 1 TATA binding Adeno_PIX PF03955.9 gi|452207303|ref|YP_007487425.1| - 1.8 9.1 7.7 18 5.9 0.1 3.2 2 0 0 2 2 2 0 Adenovirus hexon-associated protein (IX) Flagellin_C PF00700.16 gi|452207303|ref|YP_007487425.1| - 3.7 7.7 16.2 0.13 12.4 0.7 3.6 4 0 0 4 4 4 0 Bacterial flagellin C-terminal helical region IncA PF04156.9 gi|452207303|ref|YP_007487425.1| - 5.6 6.5 42.7 0.17 11.4 2.1 3.3 1 1 1 2 2 1 0 IncA protein Spc7 PF08317.6 gi|452207303|ref|YP_007487425.1| - 9.4 4.7 28.7 6.1 5.4 10.4 2.5 1 1 1 2 2 2 0 Spc7 kinetochore protein Yip1 PF04893.12 gi|452207304|ref|YP_007487426.1| - 0.55 9.7 7.5 0.95 8.9 5.2 1.3 1 0 0 1 1 1 0 Yip1 domain DUF3147 PF11345.3 gi|452207304|ref|YP_007487426.1| - 1.9 8.5 8.8 3 7.9 5.8 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3147) YlqD PF11068.3 gi|452207305|ref|YP_007487427.1| - 0.0014 18.6 9.3 0.0014 18.6 6.4 2.3 1 1 1 2 2 2 1 YlqD protein Protocadherin PF08374.6 gi|452207305|ref|YP_007487427.1| - 0.74 9.4 6.4 1.2 8.6 4.4 1.4 1 0 0 1 1 1 0 Protocadherin T2SM PF04612.7 gi|452207305|ref|YP_007487427.1| - 1.4 8.7 8.2 0.15 11.8 1.4 2.2 2 1 0 2 2 2 0 Type II secretion system (T2SS), protein M S1FA PF04689.8 gi|452207305|ref|YP_007487427.1| - 2.7 7.9 5.9 1.4 8.8 2.1 1.9 2 0 0 2 2 2 0 DNA binding protein S1FA AAA PF00004.24 gi|452207306|ref|YP_007487428.1| - 3.1e-36 124.4 0.1 2.2e-35 121.7 0.0 2.1 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|452207306|ref|YP_007487428.1| - 6.1e-07 29.2 0.1 4.1e-06 26.5 0.0 2.4 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_17 PF13207.1 gi|452207306|ref|YP_007487428.1| - 1.9e-06 28.7 0.0 6.3e-06 27.0 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|452207306|ref|YP_007487428.1| - 4.1e-05 23.6 3.3 0.0026 17.7 0.1 3.5 2 1 0 2 2 2 1 AAA ATPase domain RuvB_N PF05496.7 gi|452207306|ref|YP_007487428.1| - 4.6e-05 22.5 0.0 0.00021 20.4 0.0 2.0 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus AAA_33 PF13671.1 gi|452207306|ref|YP_007487428.1| - 0.0001 22.2 0.4 0.0011 18.8 0.0 2.5 2 2 0 2 2 2 1 AAA domain AAA_28 PF13521.1 gi|452207306|ref|YP_007487428.1| - 0.00012 22.0 0.9 0.00044 20.2 0.0 2.4 2 1 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|452207306|ref|YP_007487428.1| - 0.00024 21.2 0.6 0.0048 17.0 0.0 3.0 2 1 0 2 2 2 1 AAA domain AAA_14 PF13173.1 gi|452207306|ref|YP_007487428.1| - 0.00026 20.8 0.0 0.00056 19.8 0.0 1.6 1 0 0 1 1 1 1 AAA domain IstB_IS21 PF01695.12 gi|452207306|ref|YP_007487428.1| - 0.00034 20.0 0.0 0.001 18.4 0.0 1.8 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_18 PF13238.1 gi|452207306|ref|YP_007487428.1| - 0.00046 20.4 0.1 0.0015 18.8 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|452207306|ref|YP_007487428.1| - 0.0008 19.1 0.0 0.0048 16.6 0.0 2.3 2 0 0 2 2 2 1 Part of AAA domain AAA_2 PF07724.9 gi|452207306|ref|YP_007487428.1| - 0.001 19.0 0.1 0.0024 17.7 0.1 1.7 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) TPR_11 PF13414.1 gi|452207306|ref|YP_007487428.1| - 0.0028 17.2 0.7 0.0076 15.8 0.5 1.7 1 0 0 1 1 1 1 TPR repeat RNA_helicase PF00910.17 gi|452207306|ref|YP_007487428.1| - 0.0033 17.5 0.0 0.015 15.4 0.0 2.2 2 1 0 2 2 1 1 RNA helicase AAA_3 PF07726.6 gi|452207306|ref|YP_007487428.1| - 0.0037 16.8 0.0 0.0073 15.9 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Zeta_toxin PF06414.7 gi|452207306|ref|YP_007487428.1| - 0.01 14.9 0.2 0.12 11.4 0.0 2.6 2 1 0 2 2 2 0 Zeta toxin Arch_ATPase PF01637.13 gi|452207306|ref|YP_007487428.1| - 0.011 15.4 0.0 0.024 14.3 0.0 1.5 1 0 0 1 1 1 0 Archaeal ATPase Bac_DnaA PF00308.13 gi|452207306|ref|YP_007487428.1| - 0.013 15.1 0.0 0.026 14.1 0.0 1.4 1 0 0 1 1 1 0 Bacterial dnaA protein Mg_chelatase PF01078.16 gi|452207306|ref|YP_007487428.1| - 0.014 14.5 0.1 0.079 12.1 0.0 2.2 1 1 2 3 3 3 0 Magnesium chelatase, subunit ChlI Parvo_NS1 PF01057.12 gi|452207306|ref|YP_007487428.1| - 0.02 13.8 0.0 0.036 12.9 0.0 1.3 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 DUF2075 PF09848.4 gi|452207306|ref|YP_007487428.1| - 0.024 13.5 0.0 0.047 12.6 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_25 PF13481.1 gi|452207306|ref|YP_007487428.1| - 0.028 13.8 0.1 0.27 10.6 0.0 2.3 1 1 1 2 2 2 0 AAA domain AAA_24 PF13479.1 gi|452207306|ref|YP_007487428.1| - 0.037 13.6 0.3 0.18 11.3 0.1 2.0 2 0 0 2 2 2 0 AAA domain Serglycin PF04360.7 gi|452207306|ref|YP_007487428.1| - 0.063 13.0 0.6 0.11 12.1 0.1 1.6 2 0 0 2 2 2 0 Serglycin TIP49 PF06068.8 gi|452207306|ref|YP_007487428.1| - 0.085 11.5 0.0 0.13 10.9 0.0 1.3 1 0 0 1 1 1 0 TIP49 C-terminus Sigma54_activat PF00158.21 gi|452207306|ref|YP_007487428.1| - 0.095 12.1 0.1 1.9 7.9 0.1 2.3 1 1 0 1 1 1 0 Sigma-54 interaction domain PhoH PF02562.11 gi|452207306|ref|YP_007487428.1| - 0.095 11.9 0.0 0.24 10.6 0.0 1.6 2 0 0 2 2 1 0 PhoH-like protein Cytidylate_kin2 PF13189.1 gi|452207306|ref|YP_007487428.1| - 0.12 12.2 0.1 0.12 12.2 0.0 2.1 3 0 0 3 3 2 0 Cytidylate kinase-like family MIT PF04212.13 gi|452207306|ref|YP_007487428.1| - 0.16 11.8 6.2 0.12 12.2 1.7 2.5 2 0 0 2 2 2 0 MIT (microtubule interacting and transport) domain AAA_11 PF13086.1 gi|452207306|ref|YP_007487428.1| - 1.3 8.4 4.1 0.59 9.6 0.1 2.0 2 1 0 2 2 2 0 AAA domain FHA PF00498.21 gi|452207307|ref|YP_007487429.1| - 0.069 13.2 0.0 0.13 12.4 0.0 1.5 1 1 0 1 1 1 0 FHA domain PP2C PF00481.16 gi|452207308|ref|YP_007487430.1| - 9.3e-20 71.0 1.1 2.9e-19 69.4 0.8 1.7 1 1 0 1 1 1 1 Protein phosphatase 2C PP2C_2 PF13672.1 gi|452207308|ref|YP_007487430.1| - 1.4e-18 67.0 2.1 2.5e-18 66.2 1.5 1.3 1 1 0 1 1 1 1 Protein phosphatase 2C SpoIIE PF07228.7 gi|452207308|ref|YP_007487430.1| - 1.1e-10 41.5 5.8 8.4e-10 38.6 4.0 1.9 1 1 0 1 1 1 1 Stage II sporulation protein E (SpoIIE) PQQ_2 PF13360.1 gi|452207309|ref|YP_007487431.1| - 5e-40 137.4 16.4 7.7e-22 77.9 2.1 3.5 1 1 2 3 3 3 3 PQQ-like domain PQQ_3 PF13570.1 gi|452207309|ref|YP_007487431.1| - 1.2e-38 130.3 35.0 1.4e-06 28.4 0.2 9.2 9 0 0 9 9 9 8 PQQ-like domain Pkinase PF00069.20 gi|452207309|ref|YP_007487431.1| - 8.1e-32 110.3 0.0 1.2e-31 109.7 0.0 1.2 1 0 0 1 1 1 1 Protein kinase domain PQQ PF01011.16 gi|452207309|ref|YP_007487431.1| - 4.1e-25 86.0 11.0 1.9e-05 23.9 0.1 7.1 7 0 0 7 7 7 5 PQQ enzyme repeat Pkinase_Tyr PF07714.12 gi|452207309|ref|YP_007487431.1| - 3.4e-20 72.2 0.0 5e-20 71.6 0.0 1.2 1 0 0 1 1 1 1 Protein tyrosine kinase Kdo PF06293.9 gi|452207309|ref|YP_007487431.1| - 0.0048 15.9 0.1 0.0083 15.2 0.0 1.2 1 0 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family Pkinase PF00069.20 gi|452207310|ref|YP_007487432.1| - 8.6e-32 110.2 0.0 1.4e-31 109.6 0.0 1.2 1 0 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.12 gi|452207310|ref|YP_007487432.1| - 1.2e-18 67.1 0.0 1.7e-18 66.6 0.0 1.2 1 0 0 1 1 1 1 Protein tyrosine kinase Kdo PF06293.9 gi|452207310|ref|YP_007487432.1| - 0.0069 15.4 0.0 0.012 14.7 0.0 1.3 1 0 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family DDE_5 PF13546.1 gi|452207311|ref|YP_007487433.1| - 4.6e-19 68.3 0.0 9.2e-19 67.3 0.0 1.4 1 1 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_1 PF01609.16 gi|452207311|ref|YP_007487433.1| - 5.6e-13 48.9 0.2 1.1e-12 47.9 0.1 1.5 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_2 PF04693.7 gi|452207311|ref|YP_007487433.1| - 6.6e-05 22.0 0.0 0.0006 18.9 0.0 2.1 1 1 0 1 1 1 1 Archaeal putative transposase ISC1217 DDE_Tnp_1_6 PF13751.1 gi|452207311|ref|YP_007487433.1| - 0.0086 16.0 0.0 0.027 14.4 0.0 1.8 2 0 0 2 2 2 1 Transposase DDE domain Beta-lactamase2 PF13354.1 gi|452207311|ref|YP_007487433.1| - 0.082 12.3 0.0 1 8.7 0.0 2.5 2 1 1 3 3 3 0 Beta-lactamase enzyme family Pkinase PF00069.20 gi|452207312|ref|YP_007487434.1| - 1.6e-38 132.3 0.0 2.3e-38 131.8 0.0 1.2 1 0 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.12 gi|452207312|ref|YP_007487434.1| - 5.1e-28 97.8 0.0 7.4e-28 97.3 0.0 1.2 1 0 0 1 1 1 1 Protein tyrosine kinase Copper-bind PF00127.15 gi|452207312|ref|YP_007487434.1| - 4.3e-26 91.0 0.2 1.5e-11 44.3 0.0 2.7 2 0 0 2 2 2 2 Copper binding proteins, plastocyanin/azurin family Kdo PF06293.9 gi|452207312|ref|YP_007487434.1| - 0.019 13.9 0.1 0.032 13.2 0.0 1.2 1 0 0 1 1 1 0 Lipopolysaccharide kinase (Kdo/WaaP) family APH PF01636.18 gi|452207312|ref|YP_007487434.1| - 0.082 12.6 0.6 0.82 9.3 0.1 2.1 1 1 1 2 2 2 0 Phosphotransferase enzyme family DDE_Tnp_IS66 PF03050.9 gi|452207313|ref|YP_007487435.1| - 5.4e-54 183.2 0.2 9.5e-54 182.4 0.1 1.4 1 0 0 1 1 1 1 Transposase IS66 family zf-IS66 PF13005.2 gi|452207313|ref|YP_007487435.1| - 0.0003 20.7 7.3 0.0009 19.1 5.1 1.9 1 0 0 1 1 1 1 zinc-finger binding domain of transposase IS66 Transposase_mut PF00872.13 gi|452207313|ref|YP_007487435.1| - 0.018 13.6 0.0 0.034 12.6 0.0 1.4 1 0 0 1 1 1 0 Transposase, Mutator family DDE_Tnp_IS240 PF13610.1 gi|452207313|ref|YP_007487435.1| - 0.1 12.5 0.2 0.32 10.9 0.1 1.9 1 1 0 1 1 1 0 DDE domain DivIC PF04977.10 gi|452207313|ref|YP_007487435.1| - 0.12 11.9 0.1 0.12 11.9 0.1 2.2 3 0 0 3 3 3 0 Septum formation initiator DUF972 PF06156.8 gi|452207313|ref|YP_007487435.1| - 0.12 12.7 3.2 0.11 12.8 0.8 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF972) NYD-SP28_assoc PF14775.1 gi|452207313|ref|YP_007487435.1| - 0.14 11.8 2.3 0.45 10.2 1.6 1.9 1 0 0 1 1 1 0 Sperm tail C-terminal domain HALZ PF02183.13 gi|452207313|ref|YP_007487435.1| - 1.2 8.9 6.1 1.8 8.3 2.6 2.3 2 0 0 2 2 2 0 Homeobox associated leucine zipper DUF433 PF04255.9 gi|452207314|ref|YP_007487436.1| - 1.4e-06 27.5 0.5 4.4e-06 26.0 0.1 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF433) DUF4296 PF14129.1 gi|452207314|ref|YP_007487436.1| - 0.00062 19.8 0.0 0.00071 19.6 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4296) Glyco_trans_1_2 PF13524.1 gi|452207314|ref|YP_007487436.1| - 0.041 14.1 0.4 0.058 13.6 0.3 1.3 1 0 0 1 1 1 0 Glycosyl transferases group 1 HTH_20 PF12840.2 gi|452207315|ref|YP_007487437.1| - 2.7e-07 30.2 0.1 4.2e-07 29.6 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|452207315|ref|YP_007487437.1| - 0.00016 21.2 0.0 0.0003 20.3 0.0 1.4 1 0 0 1 1 1 1 HTH domain HTH_7 PF02796.10 gi|452207315|ref|YP_007487437.1| - 0.00017 21.3 0.0 0.00037 20.2 0.0 1.7 1 1 0 1 1 1 1 Helix-turn-helix domain of resolvase TrmB PF01978.14 gi|452207315|ref|YP_007487437.1| - 0.00017 21.1 0.0 0.00024 20.7 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB ArsR PF09824.4 gi|452207315|ref|YP_007487437.1| - 0.00026 20.3 0.0 0.00031 20.1 0.0 1.1 1 0 0 1 1 1 1 ArsR transcriptional regulator HTH_5 PF01022.15 gi|452207315|ref|YP_007487437.1| - 0.0011 18.6 0.0 0.0016 18.0 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family FUR PF01475.14 gi|452207315|ref|YP_007487437.1| - 0.0016 18.3 0.0 0.0022 17.8 0.0 1.4 1 1 0 1 1 1 1 Ferric uptake regulator family HTH_IclR PF09339.5 gi|452207315|ref|YP_007487437.1| - 0.0038 16.7 0.0 0.0066 16.0 0.0 1.5 1 1 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|452207315|ref|YP_007487437.1| - 0.02 14.5 0.1 0.029 14.0 0.1 1.3 1 0 0 1 1 1 0 MarR family TFIIE_alpha PF02002.12 gi|452207315|ref|YP_007487437.1| - 0.022 14.2 0.1 0.035 13.6 0.1 1.3 1 1 0 1 1 1 0 TFIIE alpha subunit PadR PF03551.9 gi|452207315|ref|YP_007487437.1| - 0.023 14.4 0.0 0.046 13.4 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family DUF1492 PF07374.6 gi|452207315|ref|YP_007487437.1| - 0.029 14.4 0.0 0.043 13.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1492) HTH_38 PF13936.1 gi|452207315|ref|YP_007487437.1| - 0.052 13.1 0.0 0.082 12.4 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain Diphtheria_T PF02764.9 gi|452207315|ref|YP_007487437.1| - 0.094 12.4 0.0 0.11 12.2 0.0 1.2 1 0 0 1 1 1 0 Diphtheria toxin, T domain HTH_29 PF13551.1 gi|452207315|ref|YP_007487437.1| - 0.1 12.7 0.0 0.18 11.9 0.0 1.5 1 1 0 1 1 1 0 Winged helix-turn helix Imm2 PF14426.1 gi|452207315|ref|YP_007487437.1| - 0.13 12.2 0.1 0.23 11.4 0.1 1.4 1 0 0 1 1 1 0 Immunity protein Imm2 Mga PF05043.8 gi|452207315|ref|YP_007487437.1| - 0.14 12.4 0.0 0.31 11.3 0.0 1.6 1 1 0 2 2 2 0 Mga helix-turn-helix domain Fer2 PF00111.22 gi|452207316|ref|YP_007487438.1| - 2e-13 49.8 0.3 3e-13 49.2 0.2 1.3 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Thioredoxin_7 PF13899.1 gi|452207316|ref|YP_007487438.1| - 0.062 13.3 0.1 0.091 12.7 0.0 1.3 1 0 0 1 1 1 0 Thioredoxin-like Ferritin PF00210.19 gi|452207317|ref|YP_007487439.1| - 1.3e-13 50.9 0.1 2e-13 50.3 0.0 1.3 1 0 0 1 1 1 1 Ferritin-like domain Rubrerythrin PF02915.12 gi|452207317|ref|YP_007487439.1| - 0.00052 20.3 0.3 0.0064 16.8 0.1 1.9 1 1 1 2 2 2 2 Rubrerythrin HTH_10 PF04967.7 gi|452207318|ref|YP_007487440.1| - 2.9e-12 45.9 0.0 4.8e-12 45.2 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain HTH_20 PF12840.2 gi|452207318|ref|YP_007487440.1| - 0.021 14.5 0.0 0.051 13.3 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain MarR_2 PF12802.2 gi|452207318|ref|YP_007487440.1| - 0.066 12.8 0.0 0.13 11.9 0.0 1.4 1 0 0 1 1 1 0 MarR family HTH_30 PF13556.1 gi|452207318|ref|YP_007487440.1| - 0.073 12.6 0.1 0.35 10.4 0.0 2.2 2 1 0 2 2 2 0 PucR C-terminal helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|452207318|ref|YP_007487440.1| - 0.14 11.6 0.0 0.43 10.0 0.0 1.8 1 0 0 1 1 1 0 Sigma-70, region 4 UPF0061 PF02696.9 gi|452207319|ref|YP_007487441.1| - 1.2e-93 314.0 0.3 4.7e-91 305.5 0.2 2.0 1 1 0 1 1 1 1 Uncharacterized ACR, YdiU/UPF0061 family TrmB PF01978.14 gi|452207320|ref|YP_007487442.1| - 8.9e-08 31.7 2.0 3.4e-07 29.8 0.2 2.3 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB Penicillinase_R PF03965.11 gi|452207320|ref|YP_007487442.1| - 0.0049 16.9 0.1 0.011 15.7 0.1 1.7 1 0 0 1 1 1 1 Penicillinase repressor HTH_DeoR PF08220.7 gi|452207320|ref|YP_007487442.1| - 0.0086 15.5 0.6 0.043 13.3 0.1 2.2 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain MarR PF01047.17 gi|452207320|ref|YP_007487442.1| - 0.0098 15.5 0.0 0.033 13.9 0.0 1.8 2 0 0 2 2 2 1 MarR family DUF2250 PF10007.4 gi|452207320|ref|YP_007487442.1| - 0.022 14.6 0.3 8.6 6.3 0.1 2.4 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) LemA PF04011.7 gi|452207320|ref|YP_007487442.1| - 0.043 12.9 0.3 0.071 12.2 0.2 1.3 1 0 0 1 1 1 0 LemA family HTH_11 PF08279.7 gi|452207320|ref|YP_007487442.1| - 0.058 13.0 1.2 0.13 11.9 0.1 2.1 2 0 0 2 2 2 0 HTH domain HTH_27 PF13463.1 gi|452207320|ref|YP_007487442.1| - 0.098 12.9 0.1 0.2 11.9 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain AAA_5 PF07728.9 gi|452207322|ref|YP_007487444.1| - 3.8e-16 59.0 0.0 6.7e-16 58.2 0.0 1.4 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) Sigma54_activ_2 PF14532.1 gi|452207322|ref|YP_007487444.1| - 0.0063 16.5 0.0 0.016 15.2 0.0 1.7 1 1 0 1 1 1 1 Sigma-54 interaction domain HHH_5 PF14520.1 gi|452207322|ref|YP_007487444.1| - 0.052 13.7 0.1 0.15 12.2 0.1 1.8 1 0 0 1 1 1 0 Helix-hairpin-helix domain CbbQ_C PF08406.5 gi|452207322|ref|YP_007487444.1| - 0.1 12.5 0.0 0.27 11.2 0.0 1.7 1 0 0 1 1 1 0 CbbQ/NirQ/NorQ C-terminal Antitoxin-MazE PF04014.13 gi|452207323|ref|YP_007487445.1| - 2e-11 43.3 1.4 2e-11 43.3 0.3 1.5 2 0 0 2 2 2 1 Antidote-toxin recognition MazE ANT PF03374.9 gi|452207323|ref|YP_007487445.1| - 0.12 12.4 0.1 0.25 11.4 0.1 1.6 1 0 0 1 1 1 0 Phage antirepressor protein KilAC domain PIN PF01850.16 gi|452207324|ref|YP_007487446.1| - 0.00065 20.0 0.2 0.00091 19.5 0.2 1.2 1 0 0 1 1 1 1 PIN domain HD_4 PF13328.1 gi|452207328|ref|YP_007487450.1| - 1.2e-15 57.4 2.4 1.5e-15 57.1 1.7 1.2 1 0 0 1 1 1 1 HD domain DUF3022 PF11226.3 gi|452207328|ref|YP_007487450.1| - 0.012 15.4 1.1 0.022 14.6 0.7 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3022) HD PF01966.17 gi|452207328|ref|YP_007487450.1| - 0.085 12.8 0.3 0.39 10.7 0.2 2.0 1 1 0 1 1 1 0 HD domain Phasin PF05597.6 gi|452207328|ref|YP_007487450.1| - 0.12 12.1 0.7 0.19 11.5 0.2 1.5 1 1 0 1 1 1 0 Poly(hydroxyalcanoate) granule associated protein (phasin) HEAT_2 PF13646.1 gi|452207329|ref|YP_007487451.1| - 4.1e-15 55.8 22.3 7.2e-08 32.6 1.5 4.3 2 2 2 4 4 4 4 HEAT repeats Cnd1 PF12717.2 gi|452207329|ref|YP_007487451.1| - 2.2e-09 37.4 0.0 2.6e-05 24.1 0.0 3.4 2 1 1 3 3 3 2 non-SMC mitotic condensation complex subunit 1 Arm PF00514.18 gi|452207329|ref|YP_007487451.1| - 1.4e-07 31.0 1.5 0.059 13.2 0.0 5.5 5 0 0 5 5 5 2 Armadillo/beta-catenin-like repeat HEAT PF02985.17 gi|452207329|ref|YP_007487451.1| - 1.9e-07 30.5 9.8 0.22 11.6 0.0 6.4 6 0 0 6 6 6 2 HEAT repeat Adaptin_N PF01602.15 gi|452207329|ref|YP_007487451.1| - 2.5e-07 29.4 0.0 1.4e-06 26.9 0.0 1.9 1 1 0 1 1 1 1 Adaptin N terminal region HEAT_EZ PF13513.1 gi|452207329|ref|YP_007487451.1| - 4.1e-07 30.3 20.2 0.00033 21.0 0.1 6.1 3 2 4 7 7 7 2 HEAT-like repeat DUF1546 PF07571.8 gi|452207329|ref|YP_007487451.1| - 0.0013 18.7 0.1 0.29 11.2 0.0 2.8 2 1 1 3 3 3 1 Protein of unknown function (DUF1546) Vac14_Fab1_bd PF12755.2 gi|452207329|ref|YP_007487451.1| - 0.0058 16.9 0.2 0.055 13.8 0.0 2.5 1 1 1 2 2 2 1 Vacuolar 14 Fab1-binding region XPC-binding PF09280.6 gi|452207329|ref|YP_007487451.1| - 0.033 13.6 0.2 2 7.9 0.1 3.3 3 0 0 3 3 3 0 XPC-binding domain Cnd3 PF12719.2 gi|452207329|ref|YP_007487451.1| - 0.033 13.1 0.0 0.056 12.4 0.0 1.4 1 0 0 1 1 1 0 Nuclear condensing complex subunits, C-term domain DNA_alkylation PF08713.6 gi|452207329|ref|YP_007487451.1| - 0.065 12.7 0.0 0.17 11.3 0.0 1.9 2 1 0 2 2 2 0 DNA alkylation repair enzyme HEAT_PBS PF03130.11 gi|452207329|ref|YP_007487451.1| - 0.076 13.5 13.1 14 6.5 0.0 5.7 5 1 0 5 5 4 0 PBS lyase HEAT-like repeat PqqD PF05402.7 gi|452207329|ref|YP_007487451.1| - 4.7 7.3 8.0 12 6.0 0.1 4.0 4 0 0 4 4 4 0 Coenzyme PQQ synthesis protein D (PqqD) OrfB_IS605 PF01385.14 gi|452207330|ref|YP_007487452.1| - 3.7e-29 101.7 1.2 5.8e-29 101.1 0.8 1.3 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|452207330|ref|YP_007487452.1| - 3.7e-22 77.7 0.0 9e-22 76.5 0.0 1.7 1 0 0 1 1 1 1 Putative transposase DNA-binding domain DZR PF12773.2 gi|452207330|ref|YP_007487452.1| - 0.016 14.9 0.7 0.027 14.2 0.5 1.3 1 0 0 1 1 1 0 Double zinc ribbon UPF0547 PF10571.4 gi|452207330|ref|YP_007487452.1| - 0.13 11.9 1.2 9.4 6.0 0.1 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-ribbon_3 PF13248.1 gi|452207330|ref|YP_007487452.1| - 0.15 11.3 2.3 0.74 9.1 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Zn_Tnp_IS91 PF14319.1 gi|452207330|ref|YP_007487452.1| - 0.26 10.7 1.5 0.54 9.7 0.4 2.0 2 0 0 2 2 2 0 Transposase zinc-binding domain Cas_Cas02710 PF09670.5 gi|452207331|ref|YP_007487453.1| - 3.9e-06 25.7 0.0 4.4e-06 25.5 0.0 1.0 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Cas02710) DUF1887 PF09002.6 gi|452207331|ref|YP_007487453.1| - 9.2e-05 21.0 0.0 0.0001 20.8 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1887) Cas_APE2256 PF09651.5 gi|452207331|ref|YP_007487453.1| - 0.0035 17.0 0.0 0.0047 16.6 0.0 1.3 1 1 0 1 1 1 1 CRISPR-associated protein (Cas_APE2256) PIN_4 PF13638.1 gi|452207332|ref|YP_007487454.1| - 0.0023 18.0 0.0 0.004 17.2 0.0 1.4 1 0 0 1 1 1 1 PIN domain AAA_14 PF13173.1 gi|452207333|ref|YP_007487455.1| - 1.2e-10 41.3 0.0 2.4e-10 40.4 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|452207333|ref|YP_007487455.1| - 0.00026 21.0 0.5 0.065 13.2 0.0 2.7 2 1 1 3 3 3 2 AAA ATPase domain AAA_19 PF13245.1 gi|452207333|ref|YP_007487455.1| - 0.008 15.9 0.1 0.083 12.6 0.0 2.6 3 0 0 3 3 3 1 Part of AAA domain NACHT PF05729.7 gi|452207333|ref|YP_007487455.1| - 0.011 15.3 0.0 0.023 14.3 0.0 1.6 1 1 0 1 1 1 0 NACHT domain Arch_ATPase PF01637.13 gi|452207333|ref|YP_007487455.1| - 0.012 15.2 0.0 0.02 14.6 0.0 1.4 1 0 0 1 1 1 0 Archaeal ATPase AAA_22 PF13401.1 gi|452207333|ref|YP_007487455.1| - 0.014 15.5 0.0 0.12 12.5 0.0 2.4 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|452207333|ref|YP_007487455.1| - 0.033 13.5 0.0 0.075 12.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain KaiC PF06745.8 gi|452207333|ref|YP_007487455.1| - 0.064 12.3 0.0 0.1 11.7 0.0 1.3 1 0 0 1 1 1 0 KaiC DUF4143 PF13635.1 gi|452207333|ref|YP_007487455.1| - 0.079 13.1 0.0 0.12 12.6 0.0 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4143) NB-ARC PF00931.17 gi|452207333|ref|YP_007487455.1| - 0.09 11.6 0.0 0.15 10.8 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain cobW PF02492.14 gi|452207333|ref|YP_007487455.1| - 0.093 12.1 0.0 0.2 11.1 0.0 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain NTPase_1 PF03266.10 gi|452207333|ref|YP_007487455.1| - 0.11 12.2 0.3 0.25 11.0 0.0 1.7 2 0 0 2 2 2 0 NTPase ABC_tran PF00005.22 gi|452207333|ref|YP_007487455.1| - 0.13 12.5 0.0 0.24 11.7 0.0 1.4 1 0 0 1 1 1 0 ABC transporter UPF0079 PF02367.12 gi|452207333|ref|YP_007487455.1| - 0.16 11.6 0.0 0.31 10.6 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 KAP_NTPase PF07693.9 gi|452207333|ref|YP_007487455.1| - 0.23 10.4 0.0 0.33 9.8 0.0 1.2 1 0 0 1 1 1 0 KAP family P-loop domain VWA_2 PF13519.1 gi|452207334|ref|YP_007487456.1| - 8.8e-24 84.5 0.3 2.2e-23 83.2 0.2 1.7 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA PF00092.23 gi|452207334|ref|YP_007487456.1| - 2.2e-13 50.3 0.0 4.5e-13 49.3 0.0 1.5 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_3 PF13768.1 gi|452207334|ref|YP_007487456.1| - 2.9e-07 30.3 1.0 2.4e-06 27.3 0.0 2.3 2 0 0 2 2 2 1 von Willebrand factor type A domain vWA-TerF-like PF10138.4 gi|452207334|ref|YP_007487456.1| - 1.3e-06 28.3 0.2 0.0013 18.6 0.0 2.8 3 0 0 3 3 3 2 vWA found in TerF C terminus DZR PF12773.2 gi|452207334|ref|YP_007487456.1| - 0.00041 20.1 0.2 0.0015 18.3 0.1 1.8 1 1 0 1 1 1 1 Double zinc ribbon VWA_CoxE PF05762.9 gi|452207334|ref|YP_007487456.1| - 0.0056 15.8 0.6 0.3 10.1 0.0 2.5 2 1 1 3 3 3 1 VWA domain containing CoxE-like protein DUF1272 PF06906.6 gi|452207334|ref|YP_007487456.1| - 0.05 13.4 0.5 0.25 11.2 0.3 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1272) Zn-ribbon_8 PF09723.5 gi|452207334|ref|YP_007487456.1| - 0.17 11.8 5.4 5.1 7.1 0.5 2.6 2 0 0 2 2 2 0 Zinc ribbon domain zf-ribbon_3 PF13248.1 gi|452207334|ref|YP_007487456.1| - 0.28 10.4 2.2 1.7 7.9 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-IS66 PF13005.2 gi|452207334|ref|YP_007487456.1| - 3.7 7.5 5.8 1.6 8.8 0.2 3.1 3 0 0 3 3 3 0 zinc-finger binding domain of transposase IS66 ResIII PF04851.10 gi|452207335|ref|YP_007487457.1| - 1e-14 54.7 0.0 2.8e-14 53.3 0.0 1.7 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_C PF00271.26 gi|452207335|ref|YP_007487457.1| - 9e-10 38.2 0.1 2.3e-09 36.9 0.0 1.7 1 0 0 1 1 1 1 Helicase conserved C-terminal domain SNF2_N PF00176.18 gi|452207335|ref|YP_007487457.1| - 2.8e-06 26.3 0.0 5.5e-06 25.3 0.0 1.4 1 0 0 1 1 1 1 SNF2 family N-terminal domain DEAD PF00270.24 gi|452207335|ref|YP_007487457.1| - 0.0021 17.6 0.0 0.0057 16.1 0.0 1.7 1 1 0 1 1 1 1 DEAD/DEAH box helicase AAA_19 PF13245.1 gi|452207335|ref|YP_007487457.1| - 0.042 13.5 0.2 0.18 11.5 0.0 2.1 2 0 0 2 2 2 0 Part of AAA domain DDE_Tnp_IS240 PF13610.1 gi|452207336|ref|YP_007487458.1| - 3.6e-16 59.3 0.2 4.9e-16 58.9 0.2 1.2 1 0 0 1 1 1 1 DDE domain rve PF00665.21 gi|452207336|ref|YP_007487458.1| - 0.0001 22.3 0.2 0.00015 21.8 0.1 1.3 1 0 0 1 1 1 1 Integrase core domain DDE_Tnp_IS66 PF03050.9 gi|452207336|ref|YP_007487458.1| - 0.00017 20.8 0.1 0.00046 19.5 0.0 1.8 1 1 0 1 1 1 1 Transposase IS66 family DDE_3 PF13358.1 gi|452207336|ref|YP_007487458.1| - 0.022 14.5 0.0 0.061 13.0 0.0 1.7 1 1 0 1 1 1 0 DDE superfamily endonuclease HTH_28 PF13518.1 gi|452207336|ref|YP_007487458.1| - 0.065 13.2 0.0 2.2 8.3 0.0 2.5 2 0 0 2 2 2 0 Helix-turn-helix domain PDDEXK_4 PF14281.1 gi|452207337|ref|YP_007487459.1| - 6.9e-18 65.1 0.0 1.7e-17 63.8 0.0 1.7 1 1 0 1 1 1 1 PD-(D/E)XK nuclease superfamily UvrD-helicase PF00580.16 gi|452207338|ref|YP_007487460.1| - 4.1e-58 197.1 0.1 1.3e-57 195.5 0.0 1.8 1 1 0 1 1 1 1 UvrD/REP helicase N-terminal domain UvrD_C PF13361.1 gi|452207338|ref|YP_007487460.1| - 8.5e-44 150.4 0.0 5.1e-43 147.8 0.0 2.3 2 1 0 2 2 2 1 UvrD-like helicase C-terminal domain PDDEXK_1 PF12705.2 gi|452207338|ref|YP_007487460.1| - 6.8e-11 42.0 1.8 6.8e-11 42.0 1.3 2.9 4 0 0 4 4 4 1 PD-(D/E)XK nuclease superfamily UvrD_C_2 PF13538.1 gi|452207338|ref|YP_007487460.1| - 1.8e-09 37.6 1.5 0.00019 21.4 0.0 3.6 4 0 0 4 4 4 2 UvrD-like helicase C-terminal domain AAA_19 PF13245.1 gi|452207338|ref|YP_007487460.1| - 1.2e-08 34.5 2.5 1.2e-07 31.4 0.0 3.2 4 0 0 4 4 4 1 Part of AAA domain AAA_30 PF13604.1 gi|452207338|ref|YP_007487460.1| - 2.2e-06 27.3 2.1 2.1e-05 24.1 0.0 3.0 3 0 0 3 3 3 1 AAA domain Viral_helicase1 PF01443.13 gi|452207338|ref|YP_007487460.1| - 0.0033 16.9 2.2 11 5.5 0.0 3.9 4 0 0 4 4 4 2 Viral (Superfamily 1) RNA helicase DUF2800 PF10926.3 gi|452207338|ref|YP_007487460.1| - 0.0074 15.4 1.1 0.016 14.3 0.8 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF2800) AAA_22 PF13401.1 gi|452207338|ref|YP_007487460.1| - 0.54 10.4 1.9 20 5.3 0.1 3.5 3 1 0 3 3 3 0 AAA domain PDDEXK_1 PF12705.2 gi|452207339|ref|YP_007487461.1| - 2.6e-38 131.8 0.0 7.3e-38 130.4 0.0 1.8 2 0 0 2 2 2 1 PD-(D/E)XK nuclease superfamily Exonuc_V_gamma PF04257.9 gi|452207339|ref|YP_007487461.1| - 0.002 16.2 0.1 0.0052 14.8 0.0 1.6 2 0 0 2 2 2 1 Exodeoxyribonuclease V, gamma subunit AAA_5 PF07728.9 gi|452207340|ref|YP_007487462.1| - 3.3e-14 52.8 0.0 4.6e-13 49.0 0.0 2.8 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA PF00004.24 gi|452207340|ref|YP_007487462.1| - 1.1e-06 28.8 0.0 3e-05 24.2 0.0 3.1 3 1 0 3 3 3 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|452207340|ref|YP_007487462.1| - 0.00029 21.0 0.0 0.00097 19.2 0.0 1.9 1 0 0 1 1 1 1 AAA domain AAA_14 PF13173.1 gi|452207340|ref|YP_007487462.1| - 0.0073 16.2 0.8 5.8 6.8 0.1 3.6 2 1 0 2 2 2 1 AAA domain IstB_IS21 PF01695.12 gi|452207340|ref|YP_007487462.1| - 0.0096 15.3 0.0 0.023 14.1 0.0 1.6 1 0 0 1 1 1 1 IstB-like ATP binding protein PhoH PF02562.11 gi|452207340|ref|YP_007487462.1| - 0.033 13.4 0.0 0.16 11.1 0.0 2.1 2 0 0 2 2 2 0 PhoH-like protein cwf21 PF08312.7 gi|452207340|ref|YP_007487462.1| - 0.041 13.7 0.2 7.7 6.4 0.6 3.3 3 1 0 3 3 3 0 cwf21 domain AAA_19 PF13245.1 gi|452207340|ref|YP_007487462.1| - 0.092 12.5 0.0 0.21 11.3 0.0 1.6 1 0 0 1 1 1 0 Part of AAA domain ResIII PF04851.10 gi|452207340|ref|YP_007487462.1| - 0.094 12.5 0.0 0.25 11.1 0.0 1.7 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit McrBC PF10117.4 gi|452207341|ref|YP_007487463.1| - 3.2e-48 164.2 0.0 3.8e-48 164.0 0.0 1.0 1 0 0 1 1 1 1 McrBC 5-methylcytosine restriction system component DDE_Tnp_IS240 PF13610.1 gi|452207343|ref|YP_007487465.1| - 7.3e-17 61.6 0.3 9.5e-17 61.2 0.2 1.2 1 0 0 1 1 1 1 DDE domain DDE_Tnp_IS66 PF03050.9 gi|452207343|ref|YP_007487465.1| - 2.8e-05 23.4 0.1 8.6e-05 21.8 0.0 1.7 1 1 0 1 1 1 1 Transposase IS66 family rve PF00665.21 gi|452207343|ref|YP_007487465.1| - 0.00015 21.8 0.2 0.00026 21.0 0.2 1.4 1 0 0 1 1 1 1 Integrase core domain DDE_3 PF13358.1 gi|452207343|ref|YP_007487465.1| - 0.0062 16.2 0.0 0.014 15.1 0.0 1.7 1 1 0 1 1 1 1 DDE superfamily endonuclease HTH_28 PF13518.1 gi|452207343|ref|YP_007487465.1| - 0.027 14.4 0.0 0.95 9.5 0.0 2.5 2 0 0 2 2 2 0 Helix-turn-helix domain Cob_adeno_trans PF01923.13 gi|452207345|ref|YP_007487467.1| - 0.015 15.1 0.2 3.8 7.2 0.1 2.2 1 1 1 2 2 2 0 Cobalamin adenosyltransferase RNase_H_2 PF13482.1 gi|452207345|ref|YP_007487467.1| - 0.1 12.3 1.0 0.9 9.3 0.0 2.2 2 0 0 2 2 2 0 RNase_H superfamily DUF1156 PF06634.7 gi|452207346|ref|YP_007487468.1| - 2.5e-15 55.9 0.0 4.7e-15 55.0 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1156) Methyltransf_26 PF13659.1 gi|452207346|ref|YP_007487468.1| - 6.5e-13 48.7 0.0 3.3e-05 23.9 0.0 2.3 2 0 0 2 2 2 2 Methyltransferase domain UPF0020 PF01170.13 gi|452207346|ref|YP_007487468.1| - 1.5e-07 31.1 0.0 0.0072 15.9 0.0 2.4 2 0 0 2 2 2 2 Putative RNA methylase family UPF0020 N6_N4_Mtase PF01555.13 gi|452207346|ref|YP_007487468.1| - 2.3e-06 27.2 0.1 0.0023 17.4 0.0 2.4 2 0 0 2 2 2 2 DNA methylase Cons_hypoth95 PF03602.10 gi|452207346|ref|YP_007487468.1| - 0.0039 16.6 0.0 3.2 7.1 0.0 2.3 2 0 0 2 2 2 2 Conserved hypothetical protein 95 DZR PF12773.2 gi|452207346|ref|YP_007487468.1| - 0.011 15.5 10.0 0.075 12.8 0.8 3.0 1 1 1 2 2 2 0 Double zinc ribbon zinc-ribbons_6 PF07191.7 gi|452207346|ref|YP_007487468.1| - 0.015 15.0 9.1 0.9 9.3 5.2 2.7 1 1 1 2 2 2 0 zinc-ribbons MethyltransfD12 PF02086.10 gi|452207346|ref|YP_007487468.1| - 0.017 14.5 2.4 0.15 11.4 0.0 2.6 2 0 0 2 2 2 0 D12 class N6 adenine-specific DNA methyltransferase Lar_restr_allev PF14354.1 gi|452207346|ref|YP_007487468.1| - 0.044 14.0 10.2 0.92 9.8 0.9 3.1 2 1 1 3 3 3 0 Restriction alleviation protein Lar TF_Zn_Ribbon PF08271.7 gi|452207346|ref|YP_007487468.1| - 0.096 12.0 15.7 0.073 12.4 0.5 3.4 1 1 1 3 3 3 0 TFIIB zinc-binding zf-ISL3 PF14690.1 gi|452207346|ref|YP_007487468.1| - 0.21 11.6 4.1 20 5.3 0.1 3.7 3 0 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 ADK_lid PF05191.9 gi|452207346|ref|YP_007487468.1| - 0.6 9.8 5.4 4 7.1 0.4 3.1 2 0 0 2 2 2 0 Adenylate kinase, active site lid Zn_ribbon_recom PF13408.1 gi|452207346|ref|YP_007487468.1| - 1.2 9.4 7.1 53 4.1 4.9 3.0 1 1 0 1 1 1 0 Recombinase zinc beta ribbon domain RNA_POL_M_15KD PF02150.11 gi|452207346|ref|YP_007487468.1| - 2.1 8.1 9.2 0.11 12.1 0.8 2.8 3 0 0 3 3 3 0 RNA polymerases M/15 Kd subunit zf-ribbon_3 PF13248.1 gi|452207346|ref|YP_007487468.1| - 5 6.4 16.8 0.25 10.5 0.7 4.1 4 1 0 4 4 4 0 zinc-ribbon domain C1_4 PF07975.7 gi|452207346|ref|YP_007487468.1| - 9.9 6.2 10.5 0.65 10.0 0.6 3.1 2 1 1 3 3 3 0 TFIIH C1-like domain DDE_Tnp_IS240 PF13610.1 gi|452207347|ref|YP_007487469.1| - 1.3e-27 96.4 0.0 1.9e-27 95.9 0.0 1.3 1 0 0 1 1 1 1 DDE domain rve_3 PF13683.1 gi|452207347|ref|YP_007487469.1| - 2e-10 40.0 1.2 2e-10 40.0 0.8 1.6 2 0 0 2 2 2 1 Integrase core domain DDE_Tnp_IS66 PF03050.9 gi|452207347|ref|YP_007487469.1| - 6.1e-05 22.3 0.1 0.00013 21.3 0.1 1.5 1 1 0 1 1 1 1 Transposase IS66 family rve PF00665.21 gi|452207347|ref|YP_007487469.1| - 0.016 15.2 0.3 0.11 12.6 0.0 2.3 2 1 1 3 3 3 0 Integrase core domain DUF2384 PF09722.5 gi|452207347|ref|YP_007487469.1| - 0.1 12.4 1.1 3.1 7.7 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2384) HTH_IclR PF09339.5 gi|452207348|ref|YP_007487470.1| - 0.00066 19.2 0.0 0.0013 18.3 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|452207348|ref|YP_007487470.1| - 0.0038 16.5 0.0 0.007 15.7 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|452207348|ref|YP_007487470.1| - 0.035 13.7 0.4 0.12 12.0 0.0 2.1 3 0 0 3 3 3 0 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|452207348|ref|YP_007487470.1| - 0.041 13.5 0.0 0.09 12.4 0.0 1.5 1 0 0 1 1 1 0 MarR family PepSY_2 PF13670.1 gi|452207348|ref|YP_007487470.1| - 0.21 11.4 3.4 11 6.0 0.2 3.1 3 0 0 3 3 3 0 Peptidase propeptide and YPEB domain Serglycin PF04360.7 gi|452207348|ref|YP_007487470.1| - 4.4 7.0 5.3 25 4.5 1.0 3.1 2 1 0 2 2 2 0 Serglycin DHFR_1 PF00186.14 gi|452207349|ref|YP_007487471.1| - 3.1e-47 160.1 0.0 3.6e-47 159.9 0.0 1.0 1 0 0 1 1 1 1 Dihydrofolate reductase Thymidylat_synt PF00303.14 gi|452207350|ref|YP_007487472.1| - 6.1e-91 304.1 0.0 7.2e-91 303.9 0.0 1.1 1 0 0 1 1 1 1 Thymidylate synthase DUF1470 PF07336.6 gi|452207350|ref|YP_007487472.1| - 2.8 8.2 8.2 0.6 10.4 0.2 3.0 2 1 1 3 3 3 0 Protein of unknown function (DUF1470) Cupin_2 PF07883.6 gi|452207351|ref|YP_007487473.1| - 7.2e-12 44.6 0.8 9e-12 44.3 0.6 1.1 1 0 0 1 1 1 1 Cupin domain Creatininase PF02633.9 gi|452207352|ref|YP_007487474.1| - 2e-47 161.2 0.5 2.2e-47 161.1 0.4 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase Phage_integrase PF00589.17 gi|452207353|ref|YP_007487475.1| - 1.5e-28 99.5 0.2 2.9e-28 98.7 0.1 1.5 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_4 PF13495.1 gi|452207353|ref|YP_007487475.1| - 1.6e-12 47.5 0.3 1.4e-06 28.5 0.1 2.7 2 0 0 2 2 2 2 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.12 gi|452207353|ref|YP_007487475.1| - 1e-10 41.6 0.1 0.00013 22.0 0.2 3.3 3 0 0 3 3 3 2 Phage integrase, N-terminal SAM-like domain SPC22 PF04573.7 gi|452207353|ref|YP_007487475.1| - 0.0067 15.6 0.0 0.029 13.6 0.0 1.9 2 0 0 2 2 2 1 Signal peptidase subunit DUF4187 PF13821.1 gi|452207353|ref|YP_007487475.1| - 0.05 13.1 0.6 1.7 8.3 0.0 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4187) Creatininase PF02633.9 gi|452207354|ref|YP_007487476.1| - 7.8e-70 234.6 0.1 8.8e-70 234.4 0.1 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase zf-dskA_traR PF01258.12 gi|452207355|ref|YP_007487477.1| - 0.089 12.5 2.6 1.4 8.7 0.1 2.4 2 0 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger DUF3497 PF12003.3 gi|452207355|ref|YP_007487477.1| - 0.092 12.0 0.2 0.13 11.5 0.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3497) Lar_restr_allev PF14354.1 gi|452207355|ref|YP_007487477.1| - 0.37 11.1 4.0 1.2 9.5 1.5 2.5 2 1 0 2 2 2 0 Restriction alleviation protein Lar OrfB_Zn_ribbon PF07282.6 gi|452207355|ref|YP_007487477.1| - 2.2 8.0 4.3 4.7 6.9 0.0 2.6 2 1 0 2 2 2 0 Putative transposase DNA-binding domain TIP120 PF08623.5 gi|452207356|ref|YP_007487478.1| - 0.13 11.7 0.1 0.36 10.3 0.0 1.6 2 0 0 2 2 2 0 TATA-binding protein interacting (TIP20) DUF3987 PF13148.1 gi|452207358|ref|YP_007487480.1| - 4.4e-08 32.1 0.0 5.5e-06 25.1 0.0 2.2 2 0 0 2 2 2 2 Protein of unknown function (DUF3987) HTH_Crp_2 PF13545.1 gi|452207358|ref|YP_007487480.1| - 2.3e-06 27.2 0.3 0.0003 20.5 0.0 2.7 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain MarR PF01047.17 gi|452207358|ref|YP_007487480.1| - 3e-05 23.6 0.2 0.00039 20.0 0.0 2.5 2 0 0 2 2 2 1 MarR family HTH_DeoR PF08220.7 gi|452207358|ref|YP_007487480.1| - 0.00018 20.9 0.4 0.00044 19.7 0.0 1.9 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain HTH_11 PF08279.7 gi|452207358|ref|YP_007487480.1| - 0.00044 19.8 0.1 0.0011 18.5 0.1 1.6 1 0 0 1 1 1 1 HTH domain MarR_2 PF12802.2 gi|452207358|ref|YP_007487480.1| - 0.00091 18.8 0.0 0.0039 16.8 0.0 2.1 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|452207358|ref|YP_007487480.1| - 0.002 17.4 0.1 0.0063 15.8 0.0 1.9 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|452207358|ref|YP_007487480.1| - 0.0046 16.7 0.0 0.015 15.0 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain GntR PF00392.16 gi|452207358|ref|YP_007487480.1| - 0.0052 16.1 0.3 0.023 14.1 0.0 2.2 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family TrmB PF01978.14 gi|452207358|ref|YP_007487480.1| - 0.0077 15.9 0.0 0.016 14.9 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.15 gi|452207358|ref|YP_007487480.1| - 0.022 14.8 0.0 0.078 13.1 0.0 1.9 1 0 0 1 1 1 0 Transcriptional regulator Fe_dep_repress PF01325.14 gi|452207358|ref|YP_007487480.1| - 0.026 14.4 0.0 0.061 13.2 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_12 PF08461.5 gi|452207358|ref|YP_007487480.1| - 0.029 14.0 3.8 1 9.1 0.1 3.7 4 0 0 4 4 4 0 Ribonuclease R winged-helix domain RPA_C PF08784.6 gi|452207358|ref|YP_007487480.1| - 0.058 13.8 0.1 2.8 8.4 0.0 2.6 2 0 0 2 2 2 0 Replication protein A C terminal HTH_36 PF13730.1 gi|452207358|ref|YP_007487480.1| - 0.061 13.4 0.0 0.14 12.3 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain FUSC-like PF12805.2 gi|452207360|ref|YP_007487482.1| - 0.057 12.3 0.0 0.11 11.3 0.0 1.4 1 0 0 1 1 1 0 FUSC-like inner membrane protein yccS DDE_Tnp_1 PF01609.16 gi|452207361|ref|YP_007487483.1| - 1.4e-11 44.3 0.8 2.7e-11 43.4 0.6 1.4 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_2 PF13586.1 gi|452207361|ref|YP_007487483.1| - 0.0045 17.1 0.4 0.076 13.2 0.0 2.4 3 0 0 3 3 3 1 Transposase DDE domain DUF1814 PF08843.6 gi|452207361|ref|YP_007487483.1| - 0.051 13.3 0.0 0.076 12.7 0.0 1.2 1 0 0 1 1 1 0 Nucleotidyl transferase of unknown function (DUF1814) DDE_Tnp_1_3 PF13612.1 gi|452207361|ref|YP_007487483.1| - 0.1 12.3 0.0 0.15 11.8 0.0 1.2 1 0 0 1 1 1 0 Transposase DDE domain PKD PF00801.15 gi|452207362|ref|YP_007487484.1| - 2.7e-40 135.9 6.0 2e-12 46.6 0.0 4.8 4 0 0 4 4 4 4 PKD domain BiPBP_C PF06832.7 gi|452207362|ref|YP_007487484.1| - 6.5e-14 51.6 2.0 0.0076 16.1 0.0 4.5 4 0 0 4 4 4 3 Penicillin-Binding Protein C-terminus Family Big_3_4 PF13754.1 gi|452207362|ref|YP_007487484.1| - 3.5e-08 33.6 17.2 0.094 13.0 0.9 5.2 4 1 0 4 4 4 3 Bacterial Ig-like domain (group 3) DUF4625 PF15418.1 gi|452207362|ref|YP_007487484.1| - 6.1e-08 32.8 1.7 0.17 12.0 0.0 4.9 4 0 0 4 4 4 2 Domain of unknown function (DUF4625) LEA_2 PF03168.8 gi|452207362|ref|YP_007487484.1| - 2.1e-05 24.7 0.5 0.49 10.8 0.0 4.0 5 0 0 5 5 5 2 Late embryogenesis abundant protein REJ PF02010.10 gi|452207362|ref|YP_007487484.1| - 3.2e-05 22.4 20.5 0.032 12.5 0.1 5.3 2 1 4 6 6 6 3 REJ domain Y_Y_Y PF07495.8 gi|452207362|ref|YP_007487484.1| - 5.5e-05 22.8 0.1 3.7 7.3 0.0 4.0 3 0 0 3 3 3 2 Y_Y_Y domain DUF4241 PF14025.1 gi|452207362|ref|YP_007487484.1| - 0.00015 21.5 0.2 2.1 8.0 0.0 3.6 4 0 0 4 4 4 2 Protein of unknown function (DUF4241) ChitinaseA_N PF08329.5 gi|452207362|ref|YP_007487484.1| - 0.00018 21.2 0.6 7.8 6.2 0.0 4.9 5 0 0 5 5 5 1 Chitinase A, N-terminal domain DZR PF12773.2 gi|452207363|ref|YP_007487485.1| - 0.00084 19.1 0.4 0.0011 18.6 0.3 1.3 1 1 0 1 1 1 1 Double zinc ribbon Zn-ribbon_8 PF09723.5 gi|452207363|ref|YP_007487485.1| - 0.0092 15.9 1.1 0.6 10.1 0.1 2.1 2 0 0 2 2 2 1 Zinc ribbon domain zinc-ribbons_6 PF07191.7 gi|452207363|ref|YP_007487485.1| - 0.015 15.1 0.3 0.017 14.8 0.2 1.1 1 0 0 1 1 1 0 zinc-ribbons zf-ribbon_3 PF13248.1 gi|452207363|ref|YP_007487485.1| - 0.049 12.8 1.6 5.4 6.3 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-C2HC5 PF06221.8 gi|452207363|ref|YP_007487485.1| - 0.056 13.2 0.7 5.4 6.8 0.1 2.1 2 0 0 2 2 2 0 Putative zinc finger motif, C2HC5-type TF_Zn_Ribbon PF08271.7 gi|452207363|ref|YP_007487485.1| - 0.12 11.6 5.0 0.4 10.0 3.5 1.8 1 1 0 1 1 1 0 TFIIB zinc-binding UPF0547 PF10571.4 gi|452207363|ref|YP_007487485.1| - 0.2 11.3 3.5 0.48 10.1 0.2 2.1 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zinc_ribbon_2 PF13240.1 gi|452207363|ref|YP_007487485.1| - 0.21 11.1 3.5 1.5 8.4 2.4 2.0 1 1 0 1 1 1 0 zinc-ribbon domain Lar_restr_allev PF14354.1 gi|452207363|ref|YP_007487485.1| - 0.24 11.7 2.5 0.35 11.2 1.7 1.4 1 1 0 1 1 1 0 Restriction alleviation protein Lar Nudix_N_2 PF14803.1 gi|452207363|ref|YP_007487485.1| - 0.3 10.8 1.7 10 5.9 0.1 2.3 2 1 0 2 2 2 0 Nudix N-terminal Ribosomal_S27e PF01667.12 gi|452207363|ref|YP_007487485.1| - 0.47 10.0 2.4 3.8 7.1 1.7 2.0 1 1 0 1 1 1 0 Ribosomal protein S27 DDE_3 PF13358.1 gi|452207364|ref|YP_007487486.1| - 2.6e-22 79.1 0.0 4.7e-22 78.3 0.0 1.4 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_33 PF13592.1 gi|452207364|ref|YP_007487486.1| - 4.9e-17 61.2 1.4 4.8e-16 58.0 0.1 3.1 4 0 0 4 4 4 1 Winged helix-turn helix HTH_29 PF13551.1 gi|452207364|ref|YP_007487486.1| - 1.3e-15 57.4 0.0 3.3e-15 56.1 0.0 1.7 2 0 0 2 2 2 1 Winged helix-turn helix HTH_32 PF13565.1 gi|452207364|ref|YP_007487486.1| - 8.1e-09 36.1 2.5 6.3e-08 33.3 0.2 3.3 2 1 1 3 3 3 1 Homeodomain-like domain HTH_23 PF13384.1 gi|452207364|ref|YP_007487486.1| - 1.9e-06 27.3 0.2 6e-06 25.7 0.0 1.9 2 0 0 2 2 2 1 Homeodomain-like domain rve PF00665.21 gi|452207364|ref|YP_007487486.1| - 5.1e-05 23.3 0.0 0.00053 20.0 0.0 2.3 2 0 0 2 2 2 1 Integrase core domain HTH_28 PF13518.1 gi|452207364|ref|YP_007487486.1| - 0.0002 21.2 0.0 0.0011 18.8 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_Tnp_1 PF01527.15 gi|452207364|ref|YP_007487486.1| - 0.00059 19.7 0.0 0.0012 18.7 0.0 1.5 1 0 0 1 1 1 1 Transposase HTH_38 PF13936.1 gi|452207364|ref|YP_007487486.1| - 0.0061 16.0 0.0 0.03 13.8 0.0 2.2 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_30 PF13556.1 gi|452207364|ref|YP_007487486.1| - 0.013 15.1 0.0 0.026 14.1 0.0 1.4 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain DDE_1 PF03184.14 gi|452207364|ref|YP_007487486.1| - 0.038 13.1 0.0 0.094 11.8 0.0 1.6 1 0 0 1 1 1 0 DDE superfamily endonuclease DDE_Tnp_ISAZ013 PF07592.6 gi|452207364|ref|YP_007487486.1| - 0.058 12.1 0.0 7.7 5.1 0.0 2.2 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain HTH_21 PF13276.1 gi|452207364|ref|YP_007487486.1| - 0.074 13.0 0.0 0.18 11.8 0.0 1.5 1 0 0 1 1 1 0 HTH-like domain Sigma70_r4_2 PF08281.7 gi|452207364|ref|YP_007487486.1| - 0.12 11.8 0.0 0.32 10.5 0.0 1.7 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_Tnp_ISL3 PF13542.1 gi|452207364|ref|YP_007487486.1| - 0.13 11.5 0.0 0.91 8.7 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 MarR PF01047.17 gi|452207364|ref|YP_007487486.1| - 0.14 11.8 0.0 0.61 9.8 0.0 2.0 2 0 0 2 2 2 0 MarR family DDE_Tnp_IS240 PF13610.1 gi|452207365|ref|YP_007487487.1| - 1.3e-27 96.4 0.0 1.9e-27 95.9 0.0 1.3 1 0 0 1 1 1 1 DDE domain rve_3 PF13683.1 gi|452207365|ref|YP_007487487.1| - 2e-10 40.0 1.2 2e-10 40.0 0.8 1.6 2 0 0 2 2 2 1 Integrase core domain DDE_Tnp_IS66 PF03050.9 gi|452207365|ref|YP_007487487.1| - 6.1e-05 22.3 0.1 0.00013 21.3 0.1 1.5 1 1 0 1 1 1 1 Transposase IS66 family rve PF00665.21 gi|452207365|ref|YP_007487487.1| - 0.016 15.2 0.3 0.11 12.6 0.0 2.3 2 1 1 3 3 3 0 Integrase core domain DUF2384 PF09722.5 gi|452207365|ref|YP_007487487.1| - 0.1 12.4 1.1 3.1 7.7 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2384) DDE_3 PF13358.1 gi|452207366|ref|YP_007487488.1| - 3.1e-25 88.6 0.0 5.1e-25 87.9 0.0 1.4 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_33 PF13592.1 gi|452207366|ref|YP_007487488.1| - 2.9e-15 55.5 0.9 1.2e-14 53.6 0.1 2.4 3 0 0 3 3 3 1 Winged helix-turn helix HTH_29 PF13551.1 gi|452207366|ref|YP_007487488.1| - 1.1e-10 41.6 0.0 4e-10 39.8 0.0 1.9 2 0 0 2 2 2 1 Winged helix-turn helix rve PF00665.21 gi|452207366|ref|YP_007487488.1| - 2.9e-08 33.8 0.0 7.8e-07 29.2 0.0 2.5 1 1 0 2 2 2 1 Integrase core domain HTH_32 PF13565.1 gi|452207366|ref|YP_007487488.1| - 1.1e-06 29.3 0.7 3e-06 27.9 0.1 2.1 2 0 0 2 2 2 1 Homeodomain-like domain DDE_Tnp_ISAZ013 PF07592.6 gi|452207366|ref|YP_007487488.1| - 0.018 13.8 0.0 1.4 7.6 0.0 2.8 2 1 1 3 3 3 0 Rhodopirellula transposase DDE domain HTH_28 PF13518.1 gi|452207366|ref|YP_007487488.1| - 0.035 14.1 0.1 2.2 8.3 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_23 PF13384.1 gi|452207366|ref|YP_007487488.1| - 0.037 13.6 0.0 0.11 12.1 0.0 1.8 2 0 0 2 2 2 0 Homeodomain-like domain HTH_31 PF13560.1 gi|452207366|ref|YP_007487488.1| - 0.068 13.3 0.0 0.18 12.0 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_Tnp_4 PF13613.1 gi|452207366|ref|YP_007487488.1| - 0.11 12.0 0.0 0.26 10.8 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix of DDE superfamily endonuclease DUF457 PF04307.9 gi|452207367|ref|YP_007487489.1| - 1.2e-11 44.2 6.1 1.7e-11 43.6 4.2 1.2 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) FA_desaturase PF00487.19 gi|452207367|ref|YP_007487489.1| - 0.0028 17.1 1.5 0.0035 16.8 1.0 1.1 1 0 0 1 1 1 1 Fatty acid desaturase DUF4395 PF14340.1 gi|452207367|ref|YP_007487489.1| - 0.22 11.5 5.7 0.075 13.1 1.6 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4395) DEAD PF00270.24 gi|452207368|ref|YP_007487490.1| - 1.9e-17 63.2 0.0 3e-17 62.6 0.0 1.3 1 0 0 1 1 1 1 DEAD/DEAH box helicase DUF1998 PF09369.5 gi|452207368|ref|YP_007487490.1| - 8.2e-15 55.1 0.0 2.8e-14 53.4 0.0 2.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1998) Helicase_C PF00271.26 gi|452207368|ref|YP_007487490.1| - 3.5e-12 46.0 0.4 1.7e-11 43.8 0.0 2.3 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|452207368|ref|YP_007487490.1| - 2.1e-05 24.4 0.0 3.4e-05 23.7 0.0 1.3 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit NifT PF06988.6 gi|452207368|ref|YP_007487490.1| - 0.03 13.7 0.0 8.9 5.8 0.0 2.9 2 0 0 2 2 2 0 NifT/FixU protein DUF1253 PF06862.7 gi|452207368|ref|YP_007487490.1| - 0.041 12.2 0.0 0.062 11.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1253) RNase_H_2 PF13482.1 gi|452207369|ref|YP_007487491.1| - 1.5e-32 112.6 0.0 2.1e-32 112.2 0.0 1.2 1 0 0 1 1 1 1 RNase_H superfamily HHH_5 PF14520.1 gi|452207369|ref|YP_007487491.1| - 1.3e-11 44.4 0.2 2.9e-11 43.3 0.1 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix domain HHH PF00633.18 gi|452207369|ref|YP_007487491.1| - 3.5e-06 26.4 0.3 0.12 12.1 0.0 2.6 2 0 0 2 2 2 2 Helix-hairpin-helix motif HHH_2 PF12826.2 gi|452207369|ref|YP_007487491.1| - 4.3e-05 23.3 0.1 0.00011 22.0 0.0 1.6 2 0 0 2 2 2 1 Helix-hairpin-helix motif DNA_pol_B_exo2 PF10108.4 gi|452207369|ref|YP_007487491.1| - 0.027 14.0 0.1 0.12 11.9 0.0 1.8 1 1 0 1 1 1 0 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB DNA_pol_lambd_f PF10391.4 gi|452207369|ref|YP_007487491.1| - 0.084 12.4 0.1 6.7 6.3 0.0 2.9 3 0 0 3 3 3 0 Fingers domain of DNA polymerase lambda HHH_3 PF12836.2 gi|452207369|ref|YP_007487491.1| - 0.098 12.6 0.0 0.4 10.6 0.0 1.9 1 1 0 1 1 1 0 Helix-hairpin-helix motif Cdd1 PF11731.3 gi|452207369|ref|YP_007487491.1| - 0.15 12.0 0.0 0.3 11.0 0.0 1.5 1 0 0 1 1 1 0 Pathogenicity locus zf-C2H2 PF00096.21 gi|452207370|ref|YP_007487492.1| - 1.6e-06 28.0 2.8 0.0088 16.3 0.2 2.1 2 0 0 2 2 2 2 Zinc finger, C2H2 type zf-C2H2_6 PF13912.1 gi|452207370|ref|YP_007487492.1| - 1.3e-05 24.9 4.8 0.039 13.8 0.2 2.2 2 0 0 2 2 2 2 C2H2-type zinc finger zf-C2H2_jaz PF12171.3 gi|452207370|ref|YP_007487492.1| - 1.5e-05 24.9 4.4 0.034 14.2 0.1 2.2 2 0 0 2 2 2 2 Zinc-finger double-stranded RNA-binding zf-C2H2_4 PF13894.1 gi|452207370|ref|YP_007487492.1| - 1.6e-05 24.8 4.9 0.0069 16.6 0.3 2.1 2 0 0 2 2 2 2 C2H2-type zinc finger zf-C2H2_2 PF12756.2 gi|452207370|ref|YP_007487492.1| - 0.00071 19.6 4.9 0.14 12.2 0.8 2.0 1 1 1 2 2 2 2 C2H2 type zinc-finger (2 copies) zf-H2C2_5 PF13909.1 gi|452207370|ref|YP_007487492.1| - 0.0054 16.8 0.5 0.0054 16.8 0.3 2.8 2 1 0 2 2 2 1 C2H2-type zinc-finger domain zf-LYAR PF08790.6 gi|452207370|ref|YP_007487492.1| - 0.018 14.7 4.7 1.1 8.9 0.4 2.2 2 0 0 2 2 2 0 LYAR-type C2HC zinc finger zinc_ribbon_4 PF13717.1 gi|452207370|ref|YP_007487492.1| - 0.047 13.3 1.4 1.1 8.9 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain zf-met PF12874.2 gi|452207370|ref|YP_007487492.1| - 0.056 13.6 0.2 0.056 13.6 0.1 2.2 2 1 0 2 2 2 0 Zinc-finger of C2H2 type zinc_ribbon_5 PF13719.1 gi|452207370|ref|YP_007487492.1| - 0.062 12.9 2.3 1.4 8.6 0.2 2.1 2 0 0 2 2 2 0 zinc-ribbon domain zf-RING_3 PF14369.1 gi|452207370|ref|YP_007487492.1| - 0.066 13.2 1.2 3.8 7.5 0.0 2.2 2 0 0 2 2 2 0 zinc-finger LIM PF00412.17 gi|452207370|ref|YP_007487492.1| - 0.098 12.7 3.8 0.54 10.3 2.7 1.9 1 1 0 1 1 1 0 LIM domain Prok-RING_1 PF14446.1 gi|452207370|ref|YP_007487492.1| - 0.1 12.3 4.1 2 8.1 0.6 2.1 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 Ecl1 PF12855.2 gi|452207370|ref|YP_007487492.1| - 0.11 11.7 2.0 3.3 7.0 0.3 2.1 1 1 1 2 2 2 0 Life-span regulatory factor zf-Di19 PF05605.7 gi|452207370|ref|YP_007487492.1| - 0.13 12.3 8.5 2.6 8.2 0.9 2.1 1 1 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding C1_4 PF07975.7 gi|452207370|ref|YP_007487492.1| - 0.13 12.2 4.7 0.18 11.8 3.2 1.4 1 1 0 1 1 1 0 TFIIH C1-like domain zf-DNA_Pol PF08996.5 gi|452207370|ref|YP_007487492.1| - 0.16 11.3 1.1 0.16 11.3 0.7 1.1 1 0 0 1 1 1 0 DNA Polymerase alpha zinc finger Zn-ribbon_8 PF09723.5 gi|452207370|ref|YP_007487492.1| - 0.16 11.9 4.9 1.8 8.5 0.2 2.1 1 1 1 2 2 2 0 Zinc ribbon domain XPA_N PF01286.13 gi|452207370|ref|YP_007487492.1| - 0.2 11.3 1.7 2.4 7.8 0.1 2.1 2 0 0 2 2 2 0 XPA protein N-terminal TFIIS_C PF01096.13 gi|452207370|ref|YP_007487492.1| - 0.24 11.0 2.3 4 7.1 0.1 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-AD PF07776.10 gi|452207370|ref|YP_007487492.1| - 0.27 11.2 2.5 1.3 9.1 0.1 2.0 1 1 1 2 2 2 0 Zinc-finger associated domain (zf-AD) DZR PF12773.2 gi|452207370|ref|YP_007487492.1| - 0.36 10.6 3.2 0.82 9.5 2.2 1.6 1 1 0 1 1 1 0 Double zinc ribbon DNA_RNApol_7kD PF03604.8 gi|452207370|ref|YP_007487492.1| - 0.38 10.2 1.7 10 5.6 0.1 2.2 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zf-C3HC4_3 PF13920.1 gi|452207370|ref|YP_007487492.1| - 0.51 10.0 2.8 0.9 9.2 1.9 1.5 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) zinc-ribbons_6 PF07191.7 gi|452207370|ref|YP_007487492.1| - 0.51 10.1 5.0 15 5.4 3.5 2.0 1 1 0 1 1 1 0 zinc-ribbons DUF1190 PF06693.6 gi|452207370|ref|YP_007487492.1| - 0.62 10.1 2.7 0.66 10.0 1.9 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1190) DUF629 PF04780.7 gi|452207370|ref|YP_007487492.1| - 0.65 8.4 6.5 3.9 5.8 2.4 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF629) Evr1_Alr PF04777.8 gi|452207370|ref|YP_007487492.1| - 0.82 9.6 4.0 3.8 7.4 0.2 2.0 1 1 1 2 2 2 0 Erv1 / Alr family FYVE PF01363.16 gi|452207370|ref|YP_007487492.1| - 1.3 8.9 4.6 9.4 6.2 0.4 2.0 1 1 1 2 2 2 0 FYVE zinc finger zf-C2H2_3 PF13878.1 gi|452207370|ref|YP_007487492.1| - 1.7 8.2 7.1 5.3 6.7 1.3 2.2 1 1 1 2 2 2 0 zinc-finger of acetyl-transferase ESCO NAD_binding_9 PF13454.1 gi|452207371|ref|YP_007487493.1| - 1.1e-18 67.5 0.2 4.4e-12 46.0 0.0 3.2 2 1 1 3 3 3 3 FAD-NAD(P)-binding Pyr_redox_3 PF13738.1 gi|452207371|ref|YP_007487493.1| - 4.9e-10 39.8 0.0 3.6e-07 30.4 0.0 2.1 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|452207371|ref|YP_007487493.1| - 8.9e-09 34.6 4.1 0.0068 15.3 0.0 4.0 3 1 0 4 4 4 2 FAD dependent oxidoreductase Pyr_redox PF00070.22 gi|452207371|ref|YP_007487493.1| - 6e-06 26.5 0.2 0.086 13.2 0.0 2.7 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|452207371|ref|YP_007487493.1| - 1.7e-05 24.7 0.2 0.062 13.3 0.0 2.5 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain K_oxygenase PF13434.1 gi|452207371|ref|YP_007487493.1| - 2.4e-05 23.4 0.0 0.0013 17.7 0.0 2.2 1 1 1 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) Pyr_redox_2 PF07992.9 gi|452207371|ref|YP_007487493.1| - 0.00032 20.6 0.0 0.0007 19.5 0.0 1.7 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase TrkA_N PF02254.13 gi|452207371|ref|YP_007487493.1| - 0.018 15.0 0.0 0.97 9.4 0.0 2.5 2 0 0 2 2 2 0 TrkA-N domain NAD_Gly3P_dh_N PF01210.18 gi|452207371|ref|YP_007487493.1| - 0.022 14.5 0.0 0.096 12.4 0.0 1.9 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus FAD_binding_3 PF01494.14 gi|452207371|ref|YP_007487493.1| - 0.089 11.8 0.0 1.9 7.4 0.0 2.1 2 0 0 2 2 2 0 FAD binding domain ABC-3 PF00950.12 gi|452207372|ref|YP_007487494.1| - 1.4e-53 181.8 40.0 1.7e-53 181.5 27.7 1.0 1 0 0 1 1 1 1 ABC 3 transport family FecCD PF01032.13 gi|452207372|ref|YP_007487494.1| - 0.0039 16.0 41.0 0.0087 14.9 28.1 1.8 1 1 0 1 1 1 1 FecCD transport family ABC_tran PF00005.22 gi|452207373|ref|YP_007487495.1| - 4e-31 108.1 0.0 5.2e-31 107.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|452207373|ref|YP_007487495.1| - 4.4e-11 43.2 0.0 1.4e-05 25.1 0.0 2.1 2 0 0 2 2 2 2 AAA domain SbcCD_C PF13558.1 gi|452207373|ref|YP_007487495.1| - 0.0001 22.1 0.3 0.0026 17.6 0.2 2.4 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_29 PF13555.1 gi|452207373|ref|YP_007487495.1| - 0.00054 19.4 0.1 0.00094 18.6 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|452207373|ref|YP_007487495.1| - 0.00074 18.8 0.1 0.026 13.7 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|452207373|ref|YP_007487495.1| - 0.0011 19.3 0.0 0.0018 18.6 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|452207373|ref|YP_007487495.1| - 0.0019 18.1 0.3 0.0035 17.3 0.2 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_10 PF12846.2 gi|452207373|ref|YP_007487495.1| - 0.0056 16.1 0.4 0.021 14.2 0.0 1.8 2 0 0 2 2 2 1 AAA-like domain DUF258 PF03193.11 gi|452207373|ref|YP_007487495.1| - 0.0096 15.1 0.0 0.016 14.4 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 MMR_HSR1 PF01926.18 gi|452207373|ref|YP_007487495.1| - 0.017 15.0 0.2 0.045 13.7 0.1 1.9 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_33 PF13671.1 gi|452207373|ref|YP_007487495.1| - 0.018 14.9 0.3 0.074 12.9 0.2 2.1 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|452207373|ref|YP_007487495.1| - 0.03 13.7 0.2 0.099 12.0 0.0 1.9 2 0 0 2 2 2 0 AAA domain cobW PF02492.14 gi|452207373|ref|YP_007487495.1| - 0.056 12.8 0.0 0.13 11.7 0.0 1.6 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain Methyltransf_21 PF05050.7 gi|452207373|ref|YP_007487495.1| - 0.085 12.8 0.0 0.19 11.6 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase FkbM domain AAA_17 PF13207.1 gi|452207373|ref|YP_007487495.1| - 0.11 13.2 1.0 0.51 11.1 0.7 2.3 1 1 0 1 1 1 0 AAA domain KAP_NTPase PF07693.9 gi|452207373|ref|YP_007487495.1| - 0.12 11.3 0.0 0.12 11.3 0.0 1.1 1 0 0 1 1 1 0 KAP family P-loop domain Zeta_toxin PF06414.7 gi|452207373|ref|YP_007487495.1| - 0.12 11.4 0.0 0.23 10.5 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin TroA PF01297.12 gi|452207374|ref|YP_007487496.1| - 1.6e-48 165.2 19.1 4.4e-48 163.7 13.3 1.6 1 1 0 1 1 1 1 Periplasmic solute binding protein family Trypan_PARP PF05887.6 gi|452207374|ref|YP_007487496.1| - 5.8 6.7 15.0 6.3 6.6 3.3 2.5 2 0 0 2 2 2 0 Procyclic acidic repetitive protein (PARP) Zip PF02535.17 gi|452207374|ref|YP_007487496.1| - 6.3 5.7 13.7 0.53 9.2 1.0 2.2 2 0 0 2 2 2 0 ZIP Zinc transporter NifU_N PF01592.11 gi|452207376|ref|YP_007487498.1| - 3.8e-25 88.2 0.0 4.2e-25 88.1 0.0 1.0 1 0 0 1 1 1 1 NifU-like N terminal domain MoCF_biosynth PF00994.19 gi|452207377|ref|YP_007487499.1| - 2.9e-27 94.8 0.3 3.7e-27 94.4 0.2 1.1 1 0 0 1 1 1 1 Probable molybdopterin binding domain cobW PF02492.14 gi|452207378|ref|YP_007487500.1| - 5.5e-47 159.5 0.1 7.1e-47 159.1 0.0 1.1 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain CobW_C PF07683.9 gi|452207378|ref|YP_007487500.1| - 2.4e-25 88.0 0.1 5.9e-25 86.8 0.1 1.7 1 0 0 1 1 1 1 Cobalamin synthesis protein cobW C-terminal domain GTP_EFTU PF00009.22 gi|452207378|ref|YP_007487500.1| - 0.00011 21.6 0.0 0.22 10.9 0.0 2.4 2 0 0 2 2 2 2 Elongation factor Tu GTP binding domain T2SE PF00437.15 gi|452207378|ref|YP_007487500.1| - 0.001 18.0 0.0 0.0018 17.2 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_19 PF13245.1 gi|452207378|ref|YP_007487500.1| - 0.0054 16.4 0.6 0.016 14.9 0.0 2.1 3 0 0 3 3 2 1 Part of AAA domain UPF0079 PF02367.12 gi|452207378|ref|YP_007487500.1| - 0.012 15.2 0.0 0.029 13.9 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 Zeta_toxin PF06414.7 gi|452207378|ref|YP_007487500.1| - 0.015 14.3 0.0 0.04 13.0 0.0 1.6 1 0 0 1 1 1 0 Zeta toxin TrwB_AAD_bind PF10412.4 gi|452207378|ref|YP_007487500.1| - 0.024 13.2 0.0 0.039 12.5 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_28 PF13521.1 gi|452207378|ref|YP_007487500.1| - 0.027 14.4 0.0 0.096 12.6 0.0 1.9 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|452207378|ref|YP_007487500.1| - 0.033 14.1 0.0 0.082 12.8 0.0 1.7 1 0 0 1 1 1 0 AAA ATPase domain Arch_ATPase PF01637.13 gi|452207378|ref|YP_007487500.1| - 0.046 13.4 0.0 0.072 12.7 0.0 1.3 1 0 0 1 1 1 0 Archaeal ATPase AAA_29 PF13555.1 gi|452207378|ref|YP_007487500.1| - 0.049 13.1 0.0 0.11 11.9 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain MobB PF03205.9 gi|452207378|ref|YP_007487500.1| - 0.065 12.9 0.0 0.12 12.0 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_23 PF13476.1 gi|452207378|ref|YP_007487500.1| - 0.07 13.4 0.0 0.11 12.7 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|452207378|ref|YP_007487500.1| - 0.071 12.5 0.0 0.12 11.8 0.0 1.4 1 0 0 1 1 1 0 AAA-like domain AAA_22 PF13401.1 gi|452207378|ref|YP_007487500.1| - 0.079 13.1 0.0 0.21 11.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|452207378|ref|YP_007487500.1| - 0.11 11.7 0.0 0.2 10.8 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 CbiA PF01656.18 gi|452207378|ref|YP_007487500.1| - 0.13 11.6 0.0 0.2 11.0 0.0 1.4 1 0 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain PPP4R2 PF09184.6 gi|452207378|ref|YP_007487500.1| - 0.16 11.4 2.5 0.24 10.9 1.7 1.2 1 0 0 1 1 1 0 PPP4R2 cobW PF02492.14 gi|452207379|ref|YP_007487501.1| - 1.3e-47 161.4 0.0 1.7e-47 161.1 0.0 1.1 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain CobW_C PF07683.9 gi|452207379|ref|YP_007487501.1| - 1.6e-24 85.4 0.1 3.4e-24 84.3 0.0 1.6 1 0 0 1 1 1 1 Cobalamin synthesis protein cobW C-terminal domain GTP_EFTU PF00009.22 gi|452207379|ref|YP_007487501.1| - 1.7e-05 24.3 0.0 0.043 13.2 0.0 2.1 2 0 0 2 2 2 2 Elongation factor Tu GTP binding domain AAA_10 PF12846.2 gi|452207379|ref|YP_007487501.1| - 0.0049 16.3 0.1 0.025 14.0 0.0 2.0 1 1 1 2 2 2 1 AAA-like domain T2SE PF00437.15 gi|452207379|ref|YP_007487501.1| - 0.017 14.0 0.1 0.026 13.4 0.1 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein TrwB_AAD_bind PF10412.4 gi|452207379|ref|YP_007487501.1| - 0.018 13.6 0.0 0.051 12.2 0.0 1.6 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain Zeta_toxin PF06414.7 gi|452207379|ref|YP_007487501.1| - 0.029 13.4 0.0 0.052 12.6 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin AAA_17 PF13207.1 gi|452207379|ref|YP_007487501.1| - 0.067 14.0 0.2 0.87 10.4 0.2 2.7 1 1 0 1 1 1 0 AAA domain Arch_ATPase PF01637.13 gi|452207379|ref|YP_007487501.1| - 0.085 12.5 0.0 0.14 11.8 0.0 1.3 1 0 0 1 1 1 0 Archaeal ATPase AAA_14 PF13173.1 gi|452207379|ref|YP_007487501.1| - 0.094 12.6 0.0 0.18 11.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain UPF0079 PF02367.12 gi|452207379|ref|YP_007487501.1| - 0.15 11.6 0.0 0.28 10.8 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_19 PF13245.1 gi|452207379|ref|YP_007487501.1| - 0.16 11.7 0.0 0.33 10.7 0.0 1.4 1 0 0 1 1 1 0 Part of AAA domain NikR_C PF08753.6 gi|452207380|ref|YP_007487502.1| - 2.3e-16 59.4 0.2 3.7e-16 58.7 0.1 1.4 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_1 PF01402.16 gi|452207380|ref|YP_007487502.1| - 0.00026 20.7 0.0 0.00051 19.8 0.0 1.5 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family DUF4424 PF14415.1 gi|452207380|ref|YP_007487502.1| - 0.11 11.9 0.0 0.12 11.8 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4424) DDE_Tnp_1 PF01609.16 gi|452207381|ref|YP_007487503.1| - 3.6e-06 26.6 0.1 6.8e-06 25.7 0.1 1.4 1 0 0 1 1 1 1 Transposase DDE domain NikR_C PF08753.6 gi|452207382|ref|YP_007487504.1| - 8.5e-12 44.8 0.3 1.4e-11 44.0 0.2 1.3 1 0 0 1 1 1 1 NikR C terminal nickel binding domain YojJ PF10372.4 gi|452207382|ref|YP_007487504.1| - 0.041 13.7 0.4 0.078 12.8 0.1 1.5 1 1 0 1 1 1 0 Bacterial membrane-spanning protein N-terminus DUF2191 PF09957.4 gi|452207382|ref|YP_007487504.1| - 0.1 12.4 0.0 0.32 10.8 0.0 1.8 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2191) Kinesin-related PF06548.6 gi|452207382|ref|YP_007487504.1| - 0.12 10.9 0.0 0.13 10.7 0.0 1.1 1 0 0 1 1 1 0 Kinesin-related GYD PF08734.6 gi|452207383|ref|YP_007487505.1| - 3.6e-10 39.4 0.0 4e-10 39.2 0.0 1.0 1 0 0 1 1 1 1 GYD domain ABC_tran PF00005.22 gi|452207384|ref|YP_007487506.1| - 8.3e-30 103.8 0.0 1.2e-29 103.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|452207384|ref|YP_007487506.1| - 3.3e-13 50.2 0.2 1.1e-08 35.4 0.0 2.1 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|452207384|ref|YP_007487506.1| - 1.1e-08 34.5 0.0 4.3e-08 32.6 0.0 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|452207384|ref|YP_007487506.1| - 4.5e-06 26.0 0.0 8.5e-06 25.2 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_13 PF13166.1 gi|452207384|ref|YP_007487506.1| - 0.00014 20.4 0.0 0.007 14.8 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_15 PF13175.1 gi|452207384|ref|YP_007487506.1| - 0.00044 19.4 0.0 0.31 10.0 0.0 2.0 2 0 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.1 gi|452207384|ref|YP_007487506.1| - 0.00082 19.7 0.0 0.0011 19.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|452207384|ref|YP_007487506.1| - 0.0014 18.6 0.0 0.0045 16.9 0.0 1.9 2 1 0 2 2 2 1 AAA domain AAA_30 PF13604.1 gi|452207384|ref|YP_007487506.1| - 0.0033 17.0 0.0 0.0065 16.0 0.0 1.6 1 0 0 1 1 1 1 AAA domain MukB PF04310.7 gi|452207384|ref|YP_007487506.1| - 0.0065 15.8 0.0 0.017 14.4 0.0 1.6 2 0 0 2 2 2 1 MukB N-terminal DUF258 PF03193.11 gi|452207384|ref|YP_007487506.1| - 0.0072 15.5 0.0 0.012 14.8 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 ABC_ATPase PF09818.4 gi|452207384|ref|YP_007487506.1| - 0.019 13.6 0.1 0.37 9.3 0.0 2.0 2 0 0 2 2 2 0 Predicted ATPase of the ABC class AAA_25 PF13481.1 gi|452207384|ref|YP_007487506.1| - 0.019 14.3 0.2 0.12 11.7 0.0 2.1 2 1 0 2 2 2 0 AAA domain AAA_17 PF13207.1 gi|452207384|ref|YP_007487506.1| - 0.02 15.7 0.0 0.042 14.6 0.0 1.8 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|452207384|ref|YP_007487506.1| - 0.022 14.7 0.9 0.13 12.2 0.6 2.1 1 1 1 2 2 2 0 AAA ATPase domain AAA_19 PF13245.1 gi|452207384|ref|YP_007487506.1| - 0.024 14.3 0.0 1.5 8.6 0.0 2.5 2 0 0 2 2 2 0 Part of AAA domain Zeta_toxin PF06414.7 gi|452207384|ref|YP_007487506.1| - 0.039 13.0 0.1 0.24 10.4 0.0 2.1 3 0 0 3 3 3 0 Zeta toxin NTPase_1 PF03266.10 gi|452207384|ref|YP_007487506.1| - 0.044 13.5 0.1 0.24 11.1 0.0 2.0 1 1 0 1 1 1 0 NTPase NACHT PF05729.7 gi|452207384|ref|YP_007487506.1| - 0.051 13.2 0.1 0.09 12.4 0.1 1.6 1 1 0 1 1 1 0 NACHT domain AAA_10 PF12846.2 gi|452207384|ref|YP_007487506.1| - 0.051 13.0 0.0 1.8 7.8 0.0 2.1 2 0 0 2 2 2 0 AAA-like domain AAA_33 PF13671.1 gi|452207384|ref|YP_007487506.1| - 0.052 13.4 0.0 0.12 12.2 0.0 1.8 2 0 0 2 2 2 0 AAA domain ArgK PF03308.11 gi|452207384|ref|YP_007487506.1| - 0.089 11.5 0.0 0.15 10.7 0.0 1.3 1 0 0 1 1 1 0 ArgK protein SbcCD_C PF13558.1 gi|452207384|ref|YP_007487506.1| - 0.11 12.4 0.0 0.79 9.6 0.0 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit MobB PF03205.9 gi|452207384|ref|YP_007487506.1| - 0.12 12.1 0.1 0.28 10.8 0.0 1.6 2 0 0 2 2 1 0 Molybdopterin guanine dinucleotide synthesis protein B Miro PF08477.8 gi|452207384|ref|YP_007487506.1| - 0.12 12.8 0.0 0.21 12.1 0.0 1.5 1 0 0 1 1 1 0 Miro-like protein CbiQ PF02361.11 gi|452207385|ref|YP_007487507.1| - 1.1e-25 90.5 3.2 1.6e-25 90.0 2.3 1.1 1 0 0 1 1 1 1 Cobalt transport protein DUF4349 PF14257.1 gi|452207386|ref|YP_007487508.1| - 0.87 8.7 2.8 0.59 9.3 0.7 1.6 1 1 1 2 2 2 0 Domain of unknown function (DUF4349) CbiM PF01891.11 gi|452207387|ref|YP_007487509.1| - 5.7e-32 110.9 24.6 6.5e-32 110.7 17.0 1.0 1 0 0 1 1 1 1 Cobalt uptake substrate-specific transmembrane region DUF3816 PF12822.2 gi|452207387|ref|YP_007487509.1| - 0.0075 16.1 20.8 0.0075 16.1 14.4 1.8 1 1 1 2 2 2 1 Protein of unknown function (DUF3816) DUF1370 PF07114.6 gi|452207387|ref|YP_007487509.1| - 2.4 7.3 6.4 0.84 8.8 0.3 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1370) NikR_C PF08753.6 gi|452207388|ref|YP_007487510.1| - 1.1e-07 31.5 0.0 1.5e-07 31.1 0.0 1.2 1 0 0 1 1 1 1 NikR C terminal nickel binding domain Arc PF03869.9 gi|452207388|ref|YP_007487510.1| - 0.11 12.0 0.0 0.21 11.2 0.0 1.4 1 0 0 1 1 1 0 Arc-like DNA binding domain NikR_C PF08753.6 gi|452207389|ref|YP_007487511.1| - 2.4e-20 72.2 2.4 3.3e-20 71.7 1.6 1.2 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_1 PF01402.16 gi|452207389|ref|YP_007487511.1| - 5.9e-07 29.1 0.0 1.1e-06 28.2 0.0 1.5 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family Arc PF03869.9 gi|452207389|ref|YP_007487511.1| - 0.0056 16.2 0.1 0.0089 15.6 0.1 1.3 1 0 0 1 1 1 1 Arc-like DNA binding domain G-patch_2 PF12656.2 gi|452207389|ref|YP_007487511.1| - 0.12 12.2 0.0 0.64 9.9 0.0 1.9 2 0 0 2 2 2 0 DExH-box splicing factor binding site UPF0175 PF03683.8 gi|452207390|ref|YP_007487512.1| - 1.6e-16 59.4 1.9 2.2e-16 59.0 1.3 1.2 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0175) RHH_2 PF03693.9 gi|452207390|ref|YP_007487512.1| - 0.13 12.4 0.1 0.18 11.9 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0156) DUF3368 PF11848.3 gi|452207391|ref|YP_007487513.1| - 5.2e-05 22.7 0.0 9e-05 21.9 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF3368) CbiA PF01656.18 gi|452207392|ref|YP_007487514.1| - 3.6e-18 65.6 0.0 4.4e-18 65.4 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArsA_ATPase PF02374.10 gi|452207392|ref|YP_007487514.1| - 1.6e-07 30.6 0.0 2.5e-07 30.0 0.0 1.2 1 0 0 1 1 1 1 Anion-transporting ATPase AAA_31 PF13614.1 gi|452207392|ref|YP_007487514.1| - 3.6e-07 30.2 0.0 7.8e-07 29.1 0.0 1.6 1 1 0 1 1 1 1 AAA domain MipZ PF09140.6 gi|452207392|ref|YP_007487514.1| - 0.002 17.2 0.0 0.039 13.0 0.0 2.2 2 0 0 2 2 2 1 ATPase MipZ SRP54 PF00448.17 gi|452207392|ref|YP_007487514.1| - 0.0099 15.3 0.0 0.02 14.3 0.0 1.4 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain Fer4_NifH PF00142.13 gi|452207392|ref|YP_007487514.1| - 0.014 14.6 0.0 0.019 14.1 0.0 1.2 1 0 0 1 1 1 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family YhjQ PF06564.7 gi|452207392|ref|YP_007487514.1| - 0.015 14.7 0.0 0.023 14.0 0.0 1.2 1 0 0 1 1 1 0 YhjQ protein AAA_10 PF12846.2 gi|452207392|ref|YP_007487514.1| - 0.024 14.0 0.0 0.47 9.8 0.0 2.1 1 1 1 2 2 2 0 AAA-like domain AAA_19 PF13245.1 gi|452207392|ref|YP_007487514.1| - 0.037 13.7 0.3 0.12 12.1 0.1 2.0 2 0 0 2 2 2 0 Part of AAA domain DUF2397 PF09660.5 gi|452207393|ref|YP_007487515.1| - 0.13 10.8 1.6 0.15 10.6 1.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2397) DUF3006 PF11213.3 gi|452207394|ref|YP_007487516.1| - 3.5e-10 39.4 1.3 4.2e-10 39.2 0.9 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3006) Mrr_cat PF04471.7 gi|452207395|ref|YP_007487517.1| - 9.7e-10 38.2 0.0 1.2e-09 38.0 0.0 1.1 1 0 0 1 1 1 1 Restriction endonuclease DDE_Tnp_1_assoc PF13808.1 gi|452207395|ref|YP_007487517.1| - 0.08 12.6 0.0 0.097 12.3 0.0 1.1 1 0 0 1 1 1 0 DDE_Tnp_1-associated Mrr_cat_2 PF13156.1 gi|452207395|ref|YP_007487517.1| - 0.12 12.2 0.1 0.15 11.9 0.1 1.1 1 0 0 1 1 1 0 Restriction endonuclease HTH_20 PF12840.2 gi|452207397|ref|YP_007487519.1| - 8.8e-06 25.4 0.2 1.9e-05 24.3 0.0 1.7 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|452207397|ref|YP_007487519.1| - 0.0005 19.3 0.0 0.0013 18.0 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|452207397|ref|YP_007487519.1| - 0.0058 16.3 0.0 0.013 15.2 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.15 gi|452207397|ref|YP_007487519.1| - 0.0072 15.9 0.0 0.016 14.8 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|452207397|ref|YP_007487519.1| - 0.013 15.0 0.2 1 9.1 0.0 2.9 3 0 0 3 3 3 0 MarR family Fe_dep_repress PF01325.14 gi|452207397|ref|YP_007487519.1| - 0.014 15.3 0.0 0.033 14.1 0.0 1.6 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_36 PF13730.1 gi|452207397|ref|YP_007487519.1| - 0.022 14.8 0.0 0.042 13.9 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain LexA_DNA_bind PF01726.11 gi|452207397|ref|YP_007487519.1| - 0.024 14.2 0.0 0.17 11.4 0.0 2.4 3 1 0 3 3 3 0 LexA DNA binding domain HTH_IclR PF09339.5 gi|452207397|ref|YP_007487519.1| - 0.03 13.8 0.1 0.21 11.1 0.0 2.2 2 0 0 2 2 2 0 IclR helix-turn-helix domain Rrf2 PF02082.15 gi|452207397|ref|YP_007487519.1| - 0.047 13.8 0.0 0.1 12.7 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator Penicillinase_R PF03965.11 gi|452207397|ref|YP_007487519.1| - 0.069 13.2 0.0 0.11 12.6 0.0 1.4 1 0 0 1 1 1 0 Penicillinase repressor MarR PF01047.17 gi|452207397|ref|YP_007487519.1| - 0.13 12.0 0.0 0.41 10.3 0.0 1.8 2 0 0 2 2 2 0 MarR family HTH_20 PF12840.2 gi|452207398|ref|YP_007487520.1| - 1.1e-13 50.7 0.4 0.0015 18.2 0.0 5.0 5 0 0 5 5 5 3 Helix-turn-helix domain HTH_5 PF01022.15 gi|452207398|ref|YP_007487520.1| - 5e-09 35.6 0.0 0.0029 17.2 0.0 3.4 3 0 0 3 3 3 3 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|452207398|ref|YP_007487520.1| - 4.6e-08 32.6 0.0 0.00024 20.7 0.0 3.4 3 0 0 3 3 3 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|452207398|ref|YP_007487520.1| - 2e-06 27.3 0.7 0.084 12.5 0.0 4.4 5 0 0 5 5 5 2 MarR family MarR PF01047.17 gi|452207398|ref|YP_007487520.1| - 0.01 15.5 0.0 0.52 10.0 0.0 3.3 3 0 0 3 3 3 0 MarR family HTH_34 PF13601.1 gi|452207398|ref|YP_007487520.1| - 0.013 15.5 0.1 0.078 13.0 0.0 2.3 3 0 0 3 3 3 0 Winged helix DNA-binding domain HTH_27 PF13463.1 gi|452207398|ref|YP_007487520.1| - 0.036 14.3 3.9 0.43 10.9 0.0 3.5 4 0 0 4 4 4 0 Winged helix DNA-binding domain PKD PF00801.15 gi|452207399|ref|YP_007487521.1| - 8.3e-32 108.7 68.8 6.6e-18 64.2 2.9 10.6 8 0 0 8 8 8 3 PKD domain Transglut_C PF00927.17 gi|452207399|ref|YP_007487521.1| - 3.2e-11 43.1 7.6 0.0057 16.6 0.0 8.6 8 0 0 8 8 8 3 Transglutaminase family, C-terminal ig like domain Cadherin PF00028.12 gi|452207399|ref|YP_007487521.1| - 4.8e-09 36.3 1.5 4.8e-09 36.3 1.1 8.8 8 0 0 8 8 8 1 Cadherin domain PapD-like PF14874.1 gi|452207399|ref|YP_007487521.1| - 3.1e-06 27.0 0.7 0.0049 16.7 0.0 5.3 5 0 0 5 5 5 1 Flagellar-associated PapD-like Y_Y_Y PF07495.8 gi|452207399|ref|YP_007487521.1| - 0.031 14.0 11.6 0.093 12.4 0.1 5.6 6 0 0 6 6 6 0 Y_Y_Y domain MYCBPAP PF14646.1 gi|452207399|ref|YP_007487521.1| - 0.066 11.9 0.0 25 3.4 0.0 3.7 4 0 0 4 4 4 0 MYCBP-associated protein family OrfB_IS605 PF01385.14 gi|452207400|ref|YP_007487522.1| - 6.2e-26 91.2 0.1 1.7e-25 89.7 0.2 1.6 2 0 0 2 2 2 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|452207400|ref|YP_007487522.1| - 1.2e-21 76.1 0.1 2.9e-21 74.8 0.1 1.7 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|452207400|ref|YP_007487522.1| - 7.6e-06 25.1 0.0 1.6e-05 24.1 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain Tet_JBP PF12851.2 gi|452207400|ref|YP_007487522.1| - 0.021 14.1 0.0 0.047 12.9 0.0 1.5 1 1 0 1 1 1 0 Oxygenase domain of the 2OGFeDO superfamily DZR PF12773.2 gi|452207400|ref|YP_007487522.1| - 0.053 13.3 1.4 0.11 12.3 0.9 1.5 1 0 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|452207400|ref|YP_007487522.1| - 0.081 12.1 1.2 1.6 8.0 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|452207400|ref|YP_007487522.1| - 0.62 10.0 3.3 7.2 6.6 0.3 2.4 2 0 0 2 2 2 0 Zinc ribbon domain HTH_10 PF04967.7 gi|452207401|ref|YP_007487523.1| - 5.8e-21 73.8 0.1 1.7e-20 72.3 0.1 1.9 1 0 0 1 1 1 1 HTH DNA binding domain Response_reg PF00072.19 gi|452207401|ref|YP_007487523.1| - 1.6e-15 57.0 0.0 5.9e-15 55.2 0.0 2.0 1 0 0 1 1 1 1 Response regulator receiver domain GAF_2 PF13185.1 gi|452207401|ref|YP_007487523.1| - 6.4e-08 33.2 0.5 3.8e-07 30.7 0.0 2.4 3 1 0 3 3 3 1 GAF domain HTH_20 PF12840.2 gi|452207401|ref|YP_007487523.1| - 0.00021 21.0 0.0 0.00094 18.9 0.0 2.1 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|452207401|ref|YP_007487523.1| - 0.00043 19.9 0.2 0.0038 16.8 0.1 2.4 2 0 0 2 2 2 1 MarR family Sigma70_r4 PF04545.11 gi|452207401|ref|YP_007487523.1| - 0.0041 16.3 0.2 0.011 15.0 0.1 1.7 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_24 PF13412.1 gi|452207401|ref|YP_007487523.1| - 0.038 13.3 0.1 0.084 12.2 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding MarR PF01047.17 gi|452207401|ref|YP_007487523.1| - 0.055 13.1 0.3 3.3 7.4 0.0 2.5 2 0 0 2 2 2 0 MarR family GAF_3 PF13492.1 gi|452207401|ref|YP_007487523.1| - 0.056 13.5 0.0 0.14 12.2 0.0 1.8 1 0 0 1 1 1 0 GAF domain HATPase_c PF02518.21 gi|452207402|ref|YP_007487524.1| - 8.8e-13 47.9 0.3 3.7e-12 45.9 0.2 1.9 1 1 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.1 gi|452207402|ref|YP_007487524.1| - 3.8e-05 23.3 0.0 0.00016 21.3 0.0 2.1 1 0 0 1 1 1 1 PAS domain PAS_7 PF12860.2 gi|452207402|ref|YP_007487524.1| - 0.00072 19.5 0.1 0.045 13.7 0.1 2.5 1 1 1 2 2 2 1 PAS fold PAS_4 PF08448.5 gi|452207402|ref|YP_007487524.1| - 0.0027 17.7 0.3 0.016 15.2 0.2 2.2 1 1 0 1 1 1 1 PAS fold HisKA PF00512.20 gi|452207402|ref|YP_007487524.1| - 0.024 14.6 0.6 0.042 13.8 0.4 1.4 1 0 0 1 1 1 0 His Kinase A (phospho-acceptor) domain PAS PF00989.19 gi|452207402|ref|YP_007487524.1| - 0.065 13.0 0.0 0.16 11.7 0.0 1.6 1 0 0 1 1 1 0 PAS fold Glug PF07581.7 gi|452207403|ref|YP_007487525.1| - 8.4e-54 176.2 331.7 0.00089 19.3 1.7 37.2 38 0 0 38 38 38 29 The GLUG motif DUF4347 PF14252.1 gi|452207403|ref|YP_007487525.1| - 2e-36 124.9 3.1 2e-36 124.9 2.2 3.1 4 0 0 4 4 4 1 Domain of unknown function (DUF4347) Peptidase_M26_N PF05342.9 gi|452207403|ref|YP_007487525.1| - 0.001 18.1 0.9 1.6 7.6 0.1 4.0 4 0 0 4 4 4 2 M26 IgA1-specific Metallo-endopeptidase N-terminal region DDE_Tnp_IS240 PF13610.1 gi|452207404|ref|YP_007487526.1| - 2.2e-16 60.1 0.2 2.9e-16 59.6 0.2 1.2 1 0 0 1 1 1 1 DDE domain rve PF00665.21 gi|452207404|ref|YP_007487526.1| - 3.2e-05 24.0 0.2 4.7e-05 23.4 0.1 1.3 1 0 0 1 1 1 1 Integrase core domain DDE_Tnp_IS66 PF03050.9 gi|452207404|ref|YP_007487526.1| - 0.0002 20.7 0.2 0.00054 19.2 0.1 1.8 1 1 0 1 1 1 1 Transposase IS66 family DDE_3 PF13358.1 gi|452207404|ref|YP_007487526.1| - 0.016 14.9 0.0 0.051 13.3 0.0 1.8 1 1 0 1 1 1 0 DDE superfamily endonuclease HTH_28 PF13518.1 gi|452207404|ref|YP_007487526.1| - 0.064 13.2 0.0 2.2 8.3 0.0 2.5 2 0 0 2 2 2 0 Helix-turn-helix domain DDE_Tnp_1 PF01609.16 gi|452207404|ref|YP_007487526.1| - 0.22 11.0 1.8 2.7 7.4 1.3 2.1 1 1 0 1 1 1 0 Transposase DDE domain Cdc6_C PF09079.6 gi|452207405|ref|YP_007487527.1| - 3.2e-21 74.8 0.1 7.7e-21 73.6 0.1 1.7 1 0 0 1 1 1 1 CDC6, C terminal AAA_16 PF13191.1 gi|452207405|ref|YP_007487527.1| - 1.2e-14 54.6 0.1 6.4e-14 52.3 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|452207405|ref|YP_007487527.1| - 1.5e-11 44.5 0.0 5.9e-11 42.6 0.0 1.9 2 1 0 2 2 2 1 AAA domain Arch_ATPase PF01637.13 gi|452207405|ref|YP_007487527.1| - 3.2e-05 23.7 0.0 5.1e-05 23.0 0.0 1.3 1 0 0 1 1 1 1 Archaeal ATPase NACHT PF05729.7 gi|452207405|ref|YP_007487527.1| - 7.1e-05 22.5 0.0 0.00012 21.7 0.0 1.4 1 0 0 1 1 1 1 NACHT domain AAA PF00004.24 gi|452207405|ref|YP_007487527.1| - 0.00026 21.1 0.0 0.00074 19.7 0.0 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DUF815 PF05673.8 gi|452207405|ref|YP_007487527.1| - 0.00056 18.9 0.0 0.0009 18.2 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF815) RNA_helicase PF00910.17 gi|452207405|ref|YP_007487527.1| - 0.0025 17.9 0.0 0.01 16.0 0.0 2.0 1 1 0 1 1 1 1 RNA helicase AAA_24 PF13479.1 gi|452207405|ref|YP_007487527.1| - 0.011 15.3 0.0 0.024 14.2 0.0 1.6 2 0 0 2 2 2 0 AAA domain Sigma54_activat PF00158.21 gi|452207405|ref|YP_007487527.1| - 0.014 14.8 0.0 0.022 14.2 0.0 1.3 1 0 0 1 1 1 0 Sigma-54 interaction domain NB-ARC PF00931.17 gi|452207405|ref|YP_007487527.1| - 0.015 14.1 0.0 0.021 13.6 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain AAA_5 PF07728.9 gi|452207405|ref|YP_007487527.1| - 0.016 14.9 0.0 0.054 13.2 0.0 2.1 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) Zeta_toxin PF06414.7 gi|452207405|ref|YP_007487527.1| - 0.019 14.0 0.0 0.34 9.9 0.0 2.5 2 1 1 3 3 3 0 Zeta toxin AAA_17 PF13207.1 gi|452207405|ref|YP_007487527.1| - 0.022 15.5 0.9 0.17 12.6 0.4 2.6 1 1 0 1 1 1 0 AAA domain KAP_NTPase PF07693.9 gi|452207405|ref|YP_007487527.1| - 0.038 12.9 0.0 0.58 9.0 0.0 2.1 1 1 0 2 2 2 0 KAP family P-loop domain AAA_32 PF13654.1 gi|452207405|ref|YP_007487527.1| - 0.038 12.6 0.3 1.7 7.1 0.0 2.1 2 0 0 2 2 2 0 AAA domain PIF1 PF05970.9 gi|452207405|ref|YP_007487527.1| - 0.069 12.0 0.0 0.11 11.3 0.0 1.3 1 0 0 1 1 1 0 PIF1-like helicase AAA_18 PF13238.1 gi|452207405|ref|YP_007487527.1| - 0.072 13.4 0.0 0.2 11.9 0.0 1.8 1 0 0 1 1 1 0 AAA domain HNH_2 PF13391.1 gi|452207406|ref|YP_007487528.1| - 3e-07 30.1 0.6 8.3e-07 28.7 0.0 2.1 2 0 0 2 2 2 1 HNH endonuclease MazG PF03819.12 gi|452207407|ref|YP_007487529.1| - 1.4e-08 34.5 1.1 2.2e-08 33.8 0.8 1.4 1 1 0 1 1 1 1 MazG nucleotide pyrophosphohydrolase domain dUTPase_2 PF08761.6 gi|452207407|ref|YP_007487529.1| - 0.0062 16.6 0.1 0.0066 16.5 0.1 1.1 1 0 0 1 1 1 1 dUTPase PRA-PH PF01503.12 gi|452207407|ref|YP_007487529.1| - 0.24 11.7 2.1 0.31 11.3 1.4 1.5 1 1 0 1 1 1 0 Phosphoribosyl-ATP pyrophosphohydrolase DUF2075 PF09848.4 gi|452207408|ref|YP_007487530.1| - 4.3e-102 341.6 0.0 5.4e-102 341.3 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) AAA_19 PF13245.1 gi|452207408|ref|YP_007487530.1| - 2.6e-08 33.4 0.0 5.5e-08 32.4 0.0 1.5 1 0 0 1 1 1 1 Part of AAA domain ResIII PF04851.10 gi|452207408|ref|YP_007487530.1| - 8.9e-06 25.6 0.1 0.074 12.8 0.0 2.7 1 1 1 2 2 2 2 Type III restriction enzyme, res subunit AAA PF00004.24 gi|452207408|ref|YP_007487530.1| - 4.2e-05 23.7 0.5 0.00027 21.1 0.3 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|452207408|ref|YP_007487530.1| - 0.00023 21.3 0.1 0.0011 19.1 0.0 2.2 1 1 0 1 1 1 1 AAA domain IstB_IS21 PF01695.12 gi|452207408|ref|YP_007487530.1| - 0.00047 19.6 0.0 0.00084 18.7 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein GvpD PF07088.6 gi|452207408|ref|YP_007487530.1| - 0.0017 16.7 0.0 0.0029 15.9 0.0 1.3 1 0 0 1 1 1 1 GvpD gas vesicle protein AAA_30 PF13604.1 gi|452207408|ref|YP_007487530.1| - 0.018 14.6 0.0 0.032 13.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain KaiC PF06745.8 gi|452207408|ref|YP_007487530.1| - 0.02 14.0 0.1 0.042 12.9 0.1 1.5 1 1 0 1 1 1 0 KaiC Viral_helicase1 PF01443.13 gi|452207408|ref|YP_007487530.1| - 0.041 13.3 0.0 3.4 7.1 0.0 2.8 2 1 1 3 3 3 0 Viral (Superfamily 1) RNA helicase SEF14_adhesin PF06443.6 gi|452207408|ref|YP_007487530.1| - 0.14 11.7 0.0 0.25 10.9 0.0 1.3 1 0 0 1 1 1 0 SEF14-like adhesin DEAD PF00270.24 gi|452207408|ref|YP_007487530.1| - 0.15 11.5 0.1 4.6 6.6 0.0 2.3 1 1 0 2 2 2 0 DEAD/DEAH box helicase Torsin PF06309.6 gi|452207408|ref|YP_007487530.1| - 0.15 11.9 0.0 0.55 10.1 0.0 2.0 1 0 0 1 1 1 0 Torsin AAA_17 PF13207.1 gi|452207408|ref|YP_007487530.1| - 9 7.1 8.0 11 6.8 2.6 3.3 2 1 0 2 2 2 0 AAA domain RNase_H_2 PF13482.1 gi|452207409|ref|YP_007487531.1| - 0.0019 18.0 1.7 0.19 11.5 0.0 2.3 2 1 0 2 2 2 2 RNase_H superfamily PLDc_2 PF13091.1 gi|452207410|ref|YP_007487532.1| - 1.1e-06 28.4 0.0 2.3e-06 27.3 0.0 1.5 1 0 0 1 1 1 1 PLD-like domain Tyr-DNA_phospho PF06087.7 gi|452207410|ref|YP_007487532.1| - 0.00065 18.4 0.0 0.00097 17.8 0.0 1.1 1 0 0 1 1 1 1 Tyrosyl-DNA phosphodiesterase RE_NgoFVII PF09565.5 gi|452207410|ref|YP_007487532.1| - 0.0036 16.2 0.2 0.0076 15.2 0.0 1.6 2 0 0 2 2 2 1 NgoFVII restriction endonuclease Replic_Relax PF13814.1 gi|452207411|ref|YP_007487533.1| - 0.038 13.8 0.0 0.082 12.7 0.0 1.7 1 1 0 1 1 1 0 Replication-relaxation Y1_Tnp PF01797.11 gi|452207413|ref|YP_007487535.1| - 4.3e-35 120.1 0.1 4.9e-35 120.0 0.0 1.0 1 0 0 1 1 1 1 Transposase IS200 like OrfB_Zn_ribbon PF07282.6 gi|452207414|ref|YP_007487536.1| - 2.6e-23 81.4 0.5 5e-23 80.5 0.4 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|452207414|ref|YP_007487536.1| - 5.1e-06 26.0 0.0 1e-05 25.0 0.0 1.6 2 0 0 2 2 2 1 Probable transposase TFIIB PF00382.14 gi|452207415|ref|YP_007487537.1| - 1.4e-20 72.8 3.8 2.7e-14 52.7 0.5 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|452207415|ref|YP_007487537.1| - 7.9e-09 34.7 3.7 7.9e-09 34.7 2.5 2.0 2 0 0 2 2 2 1 TFIIB zinc-binding HTH_11 PF08279.7 gi|452207415|ref|YP_007487537.1| - 0.00047 19.7 0.0 0.0015 18.1 0.0 1.8 1 0 0 1 1 1 1 HTH domain HTH_24 PF13412.1 gi|452207415|ref|YP_007487537.1| - 0.00079 18.7 0.0 0.0023 17.2 0.0 1.8 2 0 0 2 2 1 1 Winged helix-turn-helix DNA-binding DZR PF12773.2 gi|452207415|ref|YP_007487537.1| - 0.0013 18.5 0.9 0.0035 17.1 0.6 1.7 1 0 0 1 1 1 1 Double zinc ribbon GntR PF00392.16 gi|452207415|ref|YP_007487537.1| - 0.0023 17.3 4.0 0.072 12.5 0.2 2.7 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family OrfB_Zn_ribbon PF07282.6 gi|452207415|ref|YP_007487537.1| - 0.0036 16.9 0.5 0.0089 15.6 0.4 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Prok-RING_1 PF14446.1 gi|452207415|ref|YP_007487537.1| - 0.0056 16.3 3.6 0.012 15.3 2.5 1.5 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 HTH_AsnC-type PF13404.1 gi|452207415|ref|YP_007487537.1| - 0.0062 16.0 0.3 0.0062 16.0 0.2 3.1 4 0 0 4 4 3 1 AsnC-type helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|452207415|ref|YP_007487537.1| - 0.008 15.9 0.4 4.8 7.0 0.0 2.7 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_IclR PF09339.5 gi|452207415|ref|YP_007487537.1| - 0.012 15.2 0.4 0.49 10.0 0.0 2.7 3 0 0 3 3 2 0 IclR helix-turn-helix domain HTH_3 PF01381.17 gi|452207415|ref|YP_007487537.1| - 0.012 15.3 0.5 0.93 9.3 0.0 3.1 3 0 0 3 3 3 0 Helix-turn-helix zf-ribbon_3 PF13248.1 gi|452207415|ref|YP_007487537.1| - 0.014 14.5 1.2 0.036 13.2 0.9 1.7 1 0 0 1 1 1 0 zinc-ribbon domain MarR_2 PF12802.2 gi|452207415|ref|YP_007487537.1| - 0.018 14.6 1.1 0.12 12.0 0.0 2.6 3 0 0 3 3 3 0 MarR family RRN7 PF11781.3 gi|452207415|ref|YP_007487537.1| - 0.065 12.7 1.9 11 5.5 0.9 2.7 2 0 0 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 HTH_23 PF13384.1 gi|452207415|ref|YP_007487537.1| - 0.069 12.8 3.1 3.6 7.3 0.0 3.9 3 1 1 4 4 4 0 Homeodomain-like domain P68HR PF08061.6 gi|452207415|ref|YP_007487537.1| - 0.12 12.1 1.2 0.32 10.7 0.3 2.1 2 0 0 2 2 2 0 P68HR (NUC004) repeat TetR_N PF00440.18 gi|452207415|ref|YP_007487537.1| - 0.12 12.0 0.8 0.92 9.1 0.0 2.9 3 0 0 3 3 3 0 Bacterial regulatory proteins, tetR family UPF0547 PF10571.4 gi|452207415|ref|YP_007487537.1| - 0.22 11.2 1.6 0.51 10.0 1.1 1.6 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 zinc_ribbon_2 PF13240.1 gi|452207415|ref|YP_007487537.1| - 0.3 10.6 2.3 0.48 9.9 0.2 2.4 3 0 0 3 3 3 0 zinc-ribbon domain Sigma70_r4 PF04545.11 gi|452207415|ref|YP_007487537.1| - 0.32 10.3 0.1 0.32 10.3 0.1 2.7 3 0 0 3 3 2 0 Sigma-70, region 4 Nudix_N_2 PF14803.1 gi|452207415|ref|YP_007487537.1| - 0.47 10.1 2.5 3.6 7.3 1.7 2.4 1 1 0 1 1 1 0 Nudix N-terminal LacI PF00356.16 gi|452207415|ref|YP_007487537.1| - 2.9 7.5 4.9 2.8 7.6 0.1 3.1 3 0 0 3 3 2 0 Bacterial regulatory proteins, lacI family Zn-ribbon_8 PF09723.5 gi|452207415|ref|YP_007487537.1| - 4 7.4 5.1 3.5 7.6 0.4 2.4 1 1 1 2 2 2 0 Zinc ribbon domain CSD PF00313.17 gi|452207416|ref|YP_007487538.1| - 8e-18 63.9 0.3 1.2e-17 63.4 0.2 1.3 1 1 0 1 1 1 1 'Cold-shock' DNA-binding domain S1-like PF14444.1 gi|452207416|ref|YP_007487538.1| - 0.032 13.9 0.6 0.052 13.2 0.4 1.6 1 1 0 1 1 1 0 S1-like OB_RNB PF08206.6 gi|452207416|ref|YP_007487538.1| - 0.21 11.1 3.2 0.28 10.7 2.2 1.3 1 0 0 1 1 1 0 Ribonuclease B OB domain NTP_transf_2 PF01909.18 gi|452207417|ref|YP_007487539.1| - 8.4e-07 29.2 0.2 1e-06 28.9 0.1 1.4 1 1 0 1 1 1 1 Nucleotidyltransferase domain DUF294 PF03445.8 gi|452207417|ref|YP_007487539.1| - 0.0018 17.8 0.1 0.0061 16.1 0.0 1.8 2 0 0 2 2 2 1 Putative nucleotidyltransferase DUF294 DUF86 PF01934.12 gi|452207418|ref|YP_007487540.1| - 3e-16 59.1 0.1 3.8e-16 58.8 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF86 DUF3142 PF11340.3 gi|452207418|ref|YP_007487540.1| - 0.011 15.4 0.1 0.014 15.0 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3142) SH3BP5 PF05276.9 gi|452207418|ref|YP_007487540.1| - 0.11 11.7 0.8 0.24 10.7 0.2 1.7 1 1 0 2 2 2 0 SH3 domain-binding protein 5 (SH3BP5) AAA_10 PF12846.2 gi|452207419|ref|YP_007487541.1| - 3.4e-23 82.5 0.1 5.5e-23 81.8 0.1 1.3 1 0 0 1 1 1 1 AAA-like domain TrwB_AAD_bind PF10412.4 gi|452207419|ref|YP_007487541.1| - 9.1e-05 21.2 0.0 0.022 13.3 0.0 2.2 2 0 0 2 2 2 2 Type IV secretion-system coupling protein DNA-binding domain DUF87 PF01935.12 gi|452207419|ref|YP_007487541.1| - 0.00064 19.6 0.0 0.0026 17.5 0.0 1.9 2 0 0 2 2 2 1 Domain of unknown function DUF87 TraG-D_C PF12696.2 gi|452207419|ref|YP_007487541.1| - 0.045 13.6 0.0 0.079 12.8 0.0 1.4 1 0 0 1 1 1 0 TraM recognition site of TraD and TraG MMR_HSR1 PF01926.18 gi|452207419|ref|YP_007487541.1| - 0.047 13.6 0.0 3.8 7.5 0.0 3.1 3 0 0 3 3 3 0 50S ribosome-binding GTPase DUF258 PF03193.11 gi|452207419|ref|YP_007487541.1| - 0.09 11.9 0.0 1.3 8.1 0.0 2.7 3 0 0 3 3 3 0 Protein of unknown function, DUF258 ABC_tran PF00005.22 gi|452207419|ref|YP_007487541.1| - 0.24 11.6 0.0 0.53 10.5 0.0 1.5 1 0 0 1 1 1 0 ABC transporter Atg14 PF10186.4 gi|452207420|ref|YP_007487542.1| - 0.12 11.2 1.5 0.22 10.4 1.0 1.3 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 DUF972 PF06156.8 gi|452207420|ref|YP_007487542.1| - 0.34 11.2 2.8 0.66 10.3 2.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF972) Kinetocho_Slk19 PF12709.2 gi|452207420|ref|YP_007487542.1| - 0.36 10.9 3.9 0.64 10.1 2.7 1.4 1 0 0 1 1 1 0 Central kinetochore-associated DUF904 PF06005.7 gi|452207420|ref|YP_007487542.1| - 0.41 10.9 8.4 0.69 10.2 5.8 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF904) IncA PF04156.9 gi|452207420|ref|YP_007487542.1| - 3.3 7.2 7.1 5 6.6 4.9 1.1 1 0 0 1 1 1 0 IncA protein APG6 PF04111.7 gi|452207420|ref|YP_007487542.1| - 6.8 5.6 6.4 9.3 5.1 4.5 1.1 1 0 0 1 1 1 0 Autophagy protein Apg6 HNH PF01844.18 gi|452207421|ref|YP_007487543.1| - 0.0029 17.4 1.8 0.011 15.6 1.2 1.9 1 1 0 1 1 1 1 HNH endonuclease DUF4250 PF14056.1 gi|452207421|ref|YP_007487543.1| - 0.073 12.7 0.0 0.13 12.0 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4250) TraB PF01963.12 gi|452207422|ref|YP_007487544.1| - 1.9e-05 24.2 0.0 3.7e-05 23.3 0.0 1.5 2 0 0 2 2 2 1 TraB family DUF399 PF04187.8 gi|452207422|ref|YP_007487544.1| - 0.11 11.9 0.5 0.24 10.8 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function, DUF399 PaaX PF07848.7 gi|452207423|ref|YP_007487545.1| - 0.049 13.6 0.0 0.083 12.9 0.0 1.4 1 0 0 1 1 1 0 PaaX-like protein FaeA PF04703.7 gi|452207423|ref|YP_007487545.1| - 0.11 12.6 0.0 0.37 10.9 0.0 1.9 2 0 0 2 2 2 0 FaeA-like protein TrmB PF01978.14 gi|452207423|ref|YP_007487545.1| - 0.15 11.7 0.0 0.28 10.9 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DUF3262 PF11660.3 gi|452207423|ref|YP_007487545.1| - 0.25 11.4 5.4 0.42 10.7 3.7 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3262) Pyr_redox_3 PF13738.1 gi|452207424|ref|YP_007487546.1| - 2.9e-26 92.7 0.0 5.2e-26 91.9 0.0 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FMO-like PF00743.14 gi|452207424|ref|YP_007487546.1| - 1.2e-15 56.7 0.0 3.3e-12 45.3 0.0 2.1 1 1 0 2 2 2 2 Flavin-binding monooxygenase-like Pyr_redox_2 PF07992.9 gi|452207424|ref|YP_007487546.1| - 6.6e-12 45.7 0.0 2.1e-11 44.0 0.0 1.8 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase K_oxygenase PF13434.1 gi|452207424|ref|YP_007487546.1| - 1.9e-10 40.2 0.1 1.3e-09 37.4 0.0 2.2 3 0 0 3 3 3 1 L-lysine 6-monooxygenase (NADPH-requiring) Pyr_redox PF00070.22 gi|452207424|ref|YP_007487546.1| - 1.2e-06 28.7 0.3 0.096 13.1 0.0 2.7 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|452207424|ref|YP_007487546.1| - 0.0012 18.8 0.0 0.0035 17.3 0.0 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.14 gi|452207424|ref|YP_007487546.1| - 0.0027 16.8 0.4 0.0086 15.1 0.0 1.9 3 0 0 3 3 3 1 FAD binding domain NAD_binding_7 PF13241.1 gi|452207424|ref|YP_007487546.1| - 0.003 17.8 0.2 0.11 12.8 0.0 2.8 3 0 0 3 3 3 1 Putative NAD(P)-binding SnoaL_2 PF12680.2 gi|452207424|ref|YP_007487546.1| - 0.015 15.7 0.4 0.043 14.2 0.3 1.8 1 0 0 1 1 1 0 SnoaL-like domain TrkA_N PF02254.13 gi|452207424|ref|YP_007487546.1| - 0.019 14.9 0.3 2 8.4 0.0 2.5 2 0 0 2 2 2 0 TrkA-N domain DAO PF01266.19 gi|452207424|ref|YP_007487546.1| - 0.024 13.5 0.0 0.2 10.5 0.0 2.2 2 0 0 2 2 2 0 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|452207424|ref|YP_007487546.1| - 0.029 13.2 0.2 0.071 11.9 0.1 1.7 2 0 0 2 2 2 0 FAD binding domain Oxidored_nitro PF00148.14 gi|452207424|ref|YP_007487546.1| - 0.1 11.2 0.0 0.68 8.5 0.0 2.0 2 0 0 2 2 2 0 Nitrogenase component 1 type Oxidoreductase NAD_binding_9 PF13454.1 gi|452207424|ref|YP_007487546.1| - 0.11 12.2 0.1 19 4.9 0.0 3.0 3 0 0 3 3 3 0 FAD-NAD(P)-binding SNARE_assoc PF09335.6 gi|452207426|ref|YP_007487548.1| - 9e-14 51.7 9.4 3.3e-13 49.9 6.5 1.8 1 1 0 1 1 1 1 SNARE associated Golgi protein UPF0259 PF06790.6 gi|452207427|ref|YP_007487549.1| - 0.0096 15.3 3.6 0.02 14.3 2.5 1.5 1 1 0 1 1 1 1 Uncharacterised protein family (UPF0259) DUF3852 PF12963.2 gi|452207427|ref|YP_007487549.1| - 0.073 13.1 0.3 0.073 13.1 0.2 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF3852) FAD_binding_7 PF03441.9 gi|452207429|ref|YP_007487551.1| - 2.7e-80 269.5 0.1 3.4e-80 269.1 0.1 1.1 1 0 0 1 1 1 1 FAD binding domain of DNA photolyase DNA_photolyase PF00875.13 gi|452207429|ref|YP_007487551.1| - 5.6e-22 78.2 0.5 5.2e-21 75.1 0.0 2.6 3 1 1 4 4 4 1 DNA photolyase RtcB PF01139.12 gi|452207430|ref|YP_007487552.1| - 4.7e-142 473.8 0.0 5.3e-142 473.7 0.0 1.0 1 0 0 1 1 1 1 tRNA-splicing ligase RtcB Ependymin PF00811.13 gi|452207430|ref|YP_007487552.1| - 0.11 12.1 0.0 0.19 11.4 0.0 1.3 1 0 0 1 1 1 0 Ependymin CheB_methylest PF01339.12 gi|452207431|ref|YP_007487553.1| - 3.8e-56 189.3 4.0 5.2e-56 188.9 0.2 2.5 2 1 1 3 3 3 1 CheB methylesterase Response_reg PF00072.19 gi|452207431|ref|YP_007487553.1| - 2.2e-22 79.1 0.2 4.4e-22 78.2 0.1 1.5 1 0 0 1 1 1 1 Response regulator receiver domain HATPase_c PF02518.21 gi|452207432|ref|YP_007487554.1| - 3.8e-26 90.9 0.3 3e-25 88.0 0.0 2.5 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Hpt PF01627.18 gi|452207432|ref|YP_007487554.1| - 2.2e-19 69.2 0.1 6.8e-19 67.6 0.1 1.9 1 0 0 1 1 1 1 Hpt domain CheW PF01584.14 gi|452207432|ref|YP_007487554.1| - 3.5e-14 52.4 0.1 1.1e-06 28.1 0.1 2.3 2 0 0 2 2 2 2 CheW-like domain P2 PF07194.6 gi|452207432|ref|YP_007487554.1| - 2.2e-10 40.2 0.0 5e-10 39.1 0.0 1.6 1 0 0 1 1 1 1 P2 response regulator binding domain H-kinase_dim PF02895.9 gi|452207432|ref|YP_007487554.1| - 4.9e-09 36.3 2.9 1.4e-08 34.9 1.3 2.3 2 0 0 2 2 2 1 Signal transducing histidine kinase, homodimeric domain HATPase_c_2 PF13581.1 gi|452207432|ref|YP_007487554.1| - 6.8e-05 22.6 0.1 0.00021 21.0 0.1 1.9 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.1 gi|452207432|ref|YP_007487554.1| - 0.088 12.5 0.0 0.5 10.0 0.0 2.2 1 1 0 1 1 1 0 GHKL domain CheR PF01739.13 gi|452207433|ref|YP_007487555.1| - 2.4e-43 147.7 0.0 3.3e-43 147.2 0.0 1.2 1 0 0 1 1 1 1 CheR methyltransferase, SAM binding domain CheR_N PF03705.10 gi|452207433|ref|YP_007487555.1| - 3.7e-09 35.7 0.1 7.5e-09 34.8 0.0 1.5 1 0 0 1 1 1 1 CheR methyltransferase, all-alpha domain Methyltransf_12 PF08242.7 gi|452207433|ref|YP_007487555.1| - 0.0015 19.0 0.0 0.075 13.5 0.0 2.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|452207433|ref|YP_007487555.1| - 0.0019 18.7 0.0 0.0047 17.4 0.0 1.6 1 1 1 2 2 2 1 Methyltransferase domain HEAT_2 PF13646.1 gi|452207434|ref|YP_007487556.1| - 3.7e-56 187.3 18.3 1.2e-15 57.5 0.1 5.3 2 2 3 5 5 5 5 HEAT repeats HEAT PF02985.17 gi|452207434|ref|YP_007487556.1| - 1e-23 81.2 18.5 0.006 16.5 0.0 11.7 12 0 0 12 12 12 7 HEAT repeat HEAT_EZ PF13513.1 gi|452207434|ref|YP_007487556.1| - 6.4e-20 71.0 37.4 0.00048 20.5 0.6 9.8 6 3 4 10 10 10 8 HEAT-like repeat HEAT_PBS PF03130.11 gi|452207434|ref|YP_007487556.1| - 1.3e-16 59.2 35.3 0.002 18.4 1.1 10.1 11 0 0 11 11 11 7 PBS lyase HEAT-like repeat Arm PF00514.18 gi|452207434|ref|YP_007487556.1| - 1.6e-07 30.8 1.0 17 5.4 0.0 8.2 8 1 1 9 9 9 1 Armadillo/beta-catenin-like repeat ERAP1_C PF11838.3 gi|452207434|ref|YP_007487556.1| - 0.0009 18.5 1.7 0.62 9.2 0.0 3.7 1 1 2 3 3 3 2 ERAP1-like C-terminal domain Cohesin_HEAT PF12765.2 gi|452207434|ref|YP_007487556.1| - 3.5 7.6 11.7 3.1 7.8 0.3 4.2 3 0 0 3 3 3 0 HEAT repeat associated with sister chromatid cohesion CheF-arch PF04283.7 gi|452207435|ref|YP_007487557.1| - 2.3e-66 223.1 0.4 2.9e-66 222.8 0.3 1.1 1 0 0 1 1 1 1 Chemotaxis signal transduction system protein F from archaea Sigma70_r3 PF04539.11 gi|452207435|ref|YP_007487557.1| - 0.011 15.5 2.7 0.84 9.5 0.0 3.4 4 0 0 4 4 4 0 Sigma-70 region 3 DUF4601 PF15373.1 gi|452207435|ref|YP_007487557.1| - 0.034 13.0 0.0 0.048 12.5 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4601) FluMu_gp41 PF10109.4 gi|452207435|ref|YP_007487557.1| - 0.07 13.0 0.4 0.15 12.0 0.1 1.7 2 0 0 2 2 2 0 Mu-like prophage FluMu protein gp41 Diphthamide_syn PF01866.12 gi|452207436|ref|YP_007487558.1| - 4.1e-96 321.8 0.0 4.8e-96 321.6 0.0 1.0 1 0 0 1 1 1 1 Putative diphthamide synthesis protein DUF964 PF06133.6 gi|452207437|ref|YP_007487559.1| - 3.4e-18 65.6 5.1 3.8e-18 65.4 3.5 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF964) DUF3418 PF11898.3 gi|452207437|ref|YP_007487559.1| - 0.086 11.2 2.1 0.1 10.9 1.5 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF3418) DUF1470 PF07336.6 gi|452207437|ref|YP_007487559.1| - 0.17 12.2 4.5 0.22 11.8 3.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1470) APG6 PF04111.7 gi|452207437|ref|YP_007487559.1| - 1.8 7.5 5.4 2.2 7.2 3.8 1.0 1 0 0 1 1 1 0 Autophagy protein Apg6 Lactamase_B_2 PF12706.2 gi|452207438|ref|YP_007487560.1| - 3e-18 66.0 0.3 3.9e-18 65.7 0.2 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|452207438|ref|YP_007487560.1| - 1.9e-13 50.4 0.0 2.6e-13 50.0 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|452207438|ref|YP_007487560.1| - 0.00063 19.4 6.2 0.0096 15.5 4.3 2.2 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Reo_sigmaC PF04582.7 gi|452207439|ref|YP_007487561.1| - 0.004 16.3 0.3 0.0059 15.8 0.2 1.2 1 0 0 1 1 1 1 Reovirus sigma C capsid protein NPV_P10 PF05531.7 gi|452207439|ref|YP_007487561.1| - 0.012 15.8 0.5 0.51 10.6 0.0 2.5 2 0 0 2 2 2 0 Nucleopolyhedrovirus P10 protein Baculo_PEP_C PF04513.7 gi|452207439|ref|YP_007487561.1| - 0.016 15.0 0.0 0.025 14.3 0.0 1.2 1 0 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus ApoLp-III PF07464.6 gi|452207439|ref|YP_007487561.1| - 0.018 15.0 0.2 0.027 14.4 0.2 1.2 1 0 0 1 1 1 0 Apolipophorin-III precursor (apoLp-III) Hemerythrin PF01814.18 gi|452207439|ref|YP_007487561.1| - 0.02 15.0 4.5 0.041 14.0 2.9 1.8 1 1 0 1 1 1 0 Hemerythrin HHE cation binding domain HrpB7 PF09486.5 gi|452207439|ref|YP_007487561.1| - 0.02 14.8 2.6 0.036 13.9 1.8 1.4 1 0 0 1 1 1 0 Bacterial type III secretion protein (HrpB7) IncA PF04156.9 gi|452207439|ref|YP_007487561.1| - 0.027 14.0 0.8 0.038 13.5 0.6 1.2 1 0 0 1 1 1 0 IncA protein FliE PF02049.13 gi|452207439|ref|YP_007487561.1| - 0.034 14.1 0.1 0.061 13.3 0.1 1.4 1 0 0 1 1 1 0 Flagellar hook-basal body complex protein FliE Filament PF00038.16 gi|452207439|ref|YP_007487561.1| - 0.039 13.4 0.7 0.1 12.0 0.4 1.4 1 1 0 1 1 1 0 Intermediate filament protein CK2S PF15011.1 gi|452207439|ref|YP_007487561.1| - 0.046 13.5 0.0 0.08 12.7 0.0 1.4 1 1 0 1 1 1 0 Casein Kinase 2 substrate Lzipper-MIP1 PF14389.1 gi|452207439|ref|YP_007487561.1| - 0.064 13.3 0.0 0.34 11.0 0.0 2.0 2 0 0 2 2 2 0 Leucine-zipper of ternary complex factor MIP1 CENP-F_leu_zip PF10473.4 gi|452207439|ref|YP_007487561.1| - 0.08 12.8 1.8 0.89 9.4 1.3 2.0 1 1 1 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Scaffolding_pro PF11418.3 gi|452207439|ref|YP_007487561.1| - 0.18 12.1 2.0 0.29 11.4 0.9 1.7 1 1 1 2 2 2 0 Phi29 scaffolding protein DUF1664 PF07889.7 gi|452207439|ref|YP_007487561.1| - 0.19 11.5 0.3 0.48 10.2 0.2 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF1664) MAD PF05557.8 gi|452207439|ref|YP_007487561.1| - 0.2 9.7 1.3 0.26 9.3 0.9 1.1 1 0 0 1 1 1 0 Mitotic checkpoint protein TMCO5 PF14992.1 gi|452207439|ref|YP_007487561.1| - 0.22 10.6 0.3 0.29 10.2 0.2 1.1 1 0 0 1 1 1 0 TMCO5 family BLOC1_2 PF10046.4 gi|452207439|ref|YP_007487561.1| - 0.22 11.6 0.3 26 5.0 0.0 2.2 2 0 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DivIC PF04977.10 gi|452207439|ref|YP_007487561.1| - 0.28 10.7 0.5 1.2 8.6 0.2 2.0 1 1 1 2 2 2 0 Septum formation initiator APG6 PF04111.7 gi|452207439|ref|YP_007487561.1| - 0.3 10.0 0.4 0.42 9.6 0.3 1.1 1 0 0 1 1 1 0 Autophagy protein Apg6 TSKS PF15358.1 gi|452207439|ref|YP_007487561.1| - 0.6 8.2 4.9 0.2 9.7 1.5 1.4 1 1 0 1 1 1 0 Testis-specific serine kinase substrate HisG PF01634.13 gi|452207440|ref|YP_007487562.1| - 0.0013 18.3 0.0 0.0031 17.1 0.0 1.7 2 0 0 2 2 2 1 ATP phosphoribosyltransferase Phage_integrase PF00589.17 gi|452207441|ref|YP_007487563.1| - 1.6e-15 57.2 0.0 3.9e-15 55.9 0.0 1.6 2 0 0 2 2 2 1 Phage integrase family Phage_int_SAM_1 PF02899.12 gi|452207441|ref|YP_007487563.1| - 2e-07 31.0 2.7 1.4e-06 28.3 1.6 2.4 2 1 1 3 3 3 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.1 gi|452207441|ref|YP_007487563.1| - 4.2e-06 27.0 0.5 7.7e-06 26.1 0.3 1.5 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain FCD PF07729.7 gi|452207441|ref|YP_007487563.1| - 0.058 13.7 1.5 0.11 12.8 1.0 1.5 1 0 0 1 1 1 0 FCD domain HemN_C PF06969.11 gi|452207442|ref|YP_007487564.1| - 0.047 13.7 0.1 0.082 12.9 0.1 1.4 1 0 0 1 1 1 0 HemN C-terminal domain DDE_Tnp_1 PF01609.16 gi|452207444|ref|YP_007487566.1| - 6.3e-10 38.9 0.4 1.1e-09 38.2 0.3 1.3 1 0 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.6 gi|452207444|ref|YP_007487566.1| - 0.0012 18.7 0.5 0.0053 16.6 0.0 2.3 2 0 0 2 2 2 1 Transposase domain (DUF772) DDE_Tnp_1_2 PF13586.1 gi|452207444|ref|YP_007487566.1| - 0.041 14.0 1.1 0.79 9.9 0.1 2.4 1 1 1 2 2 2 0 Transposase DDE domain PRiA4_ORF3 PF07929.6 gi|452207445|ref|YP_007487567.1| - 3.7e-12 46.0 0.0 4.4e-12 45.7 0.0 1.1 1 0 0 1 1 1 1 Plasmid pRiA4b ORF-3-like protein UPF0175 PF03683.8 gi|452207446|ref|YP_007487568.1| - 1.4e-16 59.7 1.3 1.8e-16 59.3 0.9 1.2 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0175) RHH_2 PF03693.9 gi|452207446|ref|YP_007487568.1| - 0.11 12.7 0.1 0.13 12.4 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0156) DUF964 PF06133.6 gi|452207447|ref|YP_007487569.1| - 6.1e-14 51.9 15.6 8.1e-14 51.5 10.8 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF964) DivIC PF04977.10 gi|452207447|ref|YP_007487569.1| - 0.017 14.5 3.4 0.017 14.5 2.3 2.3 1 1 1 2 2 2 0 Septum formation initiator RGS PF00615.14 gi|452207447|ref|YP_007487569.1| - 0.034 14.2 2.9 0.04 14.0 2.0 1.2 1 0 0 1 1 1 0 Regulator of G protein signaling domain KTI12 PF08433.5 gi|452207447|ref|YP_007487569.1| - 0.038 13.2 2.0 0.048 12.8 1.4 1.1 1 0 0 1 1 1 0 Chromatin associated protein KTI12 IPT PF01745.11 gi|452207447|ref|YP_007487569.1| - 0.052 12.7 0.9 0.066 12.3 0.7 1.3 1 1 0 1 1 1 0 Isopentenyl transferase DUF2115 PF09888.4 gi|452207447|ref|YP_007487569.1| - 0.059 13.4 1.8 0.071 13.2 1.3 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2115) IL3 PF02059.10 gi|452207447|ref|YP_007487569.1| - 0.07 13.1 2.1 0.087 12.8 0.9 1.6 1 1 0 1 1 1 0 Interleukin-3 DUF2267 PF10025.4 gi|452207447|ref|YP_007487569.1| - 0.084 12.9 4.7 0.14 12.2 3.2 1.3 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2267) Pex19 PF04614.7 gi|452207447|ref|YP_007487569.1| - 0.087 12.4 8.5 0.1 12.2 5.9 1.1 1 0 0 1 1 1 0 Pex19 protein family Vps39_1 PF10366.4 gi|452207447|ref|YP_007487569.1| - 0.11 12.4 2.6 0.15 12.0 1.8 1.2 1 0 0 1 1 1 0 Vacuolar sorting protein 39 domain 1 Ribonuc_2-5A PF06479.7 gi|452207447|ref|YP_007487569.1| - 0.36 10.6 5.2 2.3 8.0 0.5 2.1 1 1 1 2 2 2 0 Ribonuclease 2-5A FUSC PF04632.7 gi|452207447|ref|YP_007487569.1| - 0.41 9.0 1.7 0.41 9.0 1.2 1.1 1 0 0 1 1 1 0 Fusaric acid resistance protein family OmpH PF03938.9 gi|452207447|ref|YP_007487569.1| - 0.83 9.5 15.3 1 9.3 10.6 1.2 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) DUF3347 PF11827.3 gi|452207447|ref|YP_007487569.1| - 2.1 8.3 6.5 2.4 8.1 4.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3347) PqqD PF05402.7 gi|452207447|ref|YP_007487569.1| - 8.8 6.4 6.7 16 5.5 0.0 3.0 3 1 0 3 3 3 0 Coenzyme PQQ synthesis protein D (PqqD) ArsA_ATPase PF02374.10 gi|452207448|ref|YP_007487570.1| - 1.6e-167 556.1 0.0 3.9e-94 315.1 0.0 3.9 2 2 0 2 2 2 2 Anion-transporting ATPase CbiA PF01656.18 gi|452207448|ref|YP_007487570.1| - 2.9e-28 98.6 0.1 4.7e-13 48.9 0.0 2.3 2 0 0 2 2 2 2 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|452207448|ref|YP_007487570.1| - 9.6e-15 54.8 0.0 1.8e-06 27.9 0.0 2.7 2 1 0 2 2 2 2 AAA domain Fer4_NifH PF00142.13 gi|452207448|ref|YP_007487570.1| - 4.3e-08 32.6 0.0 0.008 15.3 0.0 2.4 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_10 PF12846.2 gi|452207448|ref|YP_007487570.1| - 1.1e-07 31.5 0.2 0.01 15.2 0.0 2.7 2 1 0 2 2 2 2 AAA-like domain NB-ARC PF00931.17 gi|452207448|ref|YP_007487570.1| - 7.5e-07 28.2 0.1 0.0033 16.3 0.0 2.2 2 0 0 2 2 2 2 NB-ARC domain ArgK PF03308.11 gi|452207448|ref|YP_007487570.1| - 2.3e-06 26.5 0.3 0.00067 18.5 0.0 2.9 3 0 0 3 3 3 1 ArgK protein APS_kinase PF01583.15 gi|452207448|ref|YP_007487570.1| - 3.2e-06 26.8 0.1 0.01 15.4 0.0 2.4 2 0 0 2 2 2 2 Adenylylsulphate kinase SRP54 PF00448.17 gi|452207448|ref|YP_007487570.1| - 4.4e-06 26.2 5.9 0.68 9.3 0.5 4.2 3 1 1 4 4 4 2 SRP54-type protein, GTPase domain AAA_16 PF13191.1 gi|452207448|ref|YP_007487570.1| - 5.6e-06 26.4 0.1 0.0093 15.9 0.0 2.6 2 1 0 2 2 2 2 AAA ATPase domain AAA_25 PF13481.1 gi|452207448|ref|YP_007487570.1| - 8.5e-06 25.3 8.2 0.024 14.0 0.1 4.0 2 2 0 2 2 2 2 AAA domain PhoH PF02562.11 gi|452207448|ref|YP_007487570.1| - 2.1e-05 23.8 0.1 0.02 14.1 0.0 2.6 2 1 0 2 2 2 2 PhoH-like protein IstB_IS21 PF01695.12 gi|452207448|ref|YP_007487570.1| - 4.8e-05 22.8 0.0 0.091 12.1 0.0 2.3 2 0 0 2 2 2 2 IstB-like ATP binding protein MobB PF03205.9 gi|452207448|ref|YP_007487570.1| - 4.9e-05 23.0 0.6 0.13 12.0 0.3 2.9 2 1 1 3 3 3 2 Molybdopterin guanine dinucleotide synthesis protein B AAA_29 PF13555.1 gi|452207448|ref|YP_007487570.1| - 6e-05 22.4 0.1 0.48 9.9 0.0 2.6 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_17 PF13207.1 gi|452207448|ref|YP_007487570.1| - 0.0001 23.0 1.5 0.049 14.4 0.0 3.1 2 1 0 2 2 2 1 AAA domain NTPase_1 PF03266.10 gi|452207448|ref|YP_007487570.1| - 0.00014 21.6 0.2 0.036 13.7 0.0 3.0 3 1 0 3 3 3 1 NTPase AAA_30 PF13604.1 gi|452207448|ref|YP_007487570.1| - 0.00023 20.8 2.9 0.089 12.3 0.4 2.9 3 0 0 3 3 2 2 AAA domain AAA_22 PF13401.1 gi|452207448|ref|YP_007487570.1| - 0.00057 20.0 0.0 1.5 8.9 0.0 2.8 2 0 0 2 2 2 2 AAA domain MipZ PF09140.6 gi|452207448|ref|YP_007487570.1| - 0.00074 18.6 5.7 1.1 8.2 0.2 3.9 3 1 0 4 4 4 2 ATPase MipZ DUF258 PF03193.11 gi|452207448|ref|YP_007487570.1| - 0.00076 18.6 0.0 0.27 10.3 0.0 2.4 2 0 0 2 2 2 1 Protein of unknown function, DUF258 ATP_bind_1 PF03029.12 gi|452207448|ref|YP_007487570.1| - 0.00078 19.0 0.6 0.2 11.1 0.1 2.5 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein Helicase_RecD PF05127.9 gi|452207448|ref|YP_007487570.1| - 0.0011 18.6 0.0 0.16 11.5 0.0 2.3 2 0 0 2 2 2 1 Helicase AAA_5 PF07728.9 gi|452207448|ref|YP_007487570.1| - 0.0026 17.4 0.0 0.1 12.3 0.0 2.5 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) Thymidylate_kin PF02223.12 gi|452207448|ref|YP_007487570.1| - 0.0066 15.8 0.1 1.9 7.8 0.1 2.5 2 0 0 2 2 2 1 Thymidylate kinase AAA_18 PF13238.1 gi|452207448|ref|YP_007487570.1| - 0.0088 16.3 3.4 0.3 11.4 0.1 3.1 2 2 0 2 2 2 1 AAA domain RNA_helicase PF00910.17 gi|452207448|ref|YP_007487570.1| - 0.013 15.6 0.0 3.8 7.7 0.0 2.6 2 0 0 2 2 2 0 RNA helicase PIF1 PF05970.9 gi|452207448|ref|YP_007487570.1| - 0.017 14.1 0.0 1 8.2 0.0 2.2 2 0 0 2 2 2 0 PIF1-like helicase T2SE PF00437.15 gi|452207448|ref|YP_007487570.1| - 0.02 13.8 0.1 1.8 7.4 0.0 2.3 2 0 0 2 2 2 0 Type II/IV secretion system protein ABC_tran PF00005.22 gi|452207448|ref|YP_007487570.1| - 0.025 14.8 0.0 3.2 8.0 0.0 2.5 2 0 0 2 2 2 0 ABC transporter AAA_33 PF13671.1 gi|452207448|ref|YP_007487570.1| - 0.054 13.3 0.0 7.3 6.4 0.0 2.5 2 0 0 2 2 2 0 AAA domain AAA PF00004.24 gi|452207448|ref|YP_007487570.1| - 0.054 13.6 0.2 2.4 8.3 0.0 2.7 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) 6PF2K PF01591.13 gi|452207448|ref|YP_007487570.1| - 0.056 12.5 0.1 0.97 8.4 0.0 2.2 2 0 0 2 2 2 0 6-phosphofructo-2-kinase KTI12 PF08433.5 gi|452207448|ref|YP_007487570.1| - 0.077 12.1 0.1 1 8.4 0.0 2.5 2 1 0 2 2 2 0 Chromatin associated protein KTI12 Hydrolase_4 PF12146.3 gi|452207448|ref|YP_007487570.1| - 0.091 12.6 0.0 13 5.7 0.0 3.1 3 0 0 3 3 2 0 Putative lysophospholipase NACHT PF05729.7 gi|452207448|ref|YP_007487570.1| - 0.17 11.5 0.3 7.2 6.2 0.1 2.5 2 0 0 2 2 2 0 NACHT domain VirC1 PF07015.6 gi|452207448|ref|YP_007487570.1| - 0.32 10.0 2.2 17 4.3 0.1 2.9 3 0 0 3 3 3 0 VirC1 protein AAA_24 PF13479.1 gi|452207448|ref|YP_007487570.1| - 0.76 9.3 9.6 1.2 8.6 1.2 3.9 3 2 0 3 3 3 0 AAA domain ArsD PF06953.6 gi|452207449|ref|YP_007487571.1| - 4.9e-29 100.9 0.1 5.3e-29 100.8 0.1 1.0 1 0 0 1 1 1 1 Arsenical resistance operon trans-acting repressor ArsD Thioredoxin_3 PF13192.1 gi|452207449|ref|YP_007487571.1| - 0.063 13.0 0.1 0.1 12.4 0.0 1.5 1 1 0 1 1 1 0 Thioredoxin domain HTH_20 PF12840.2 gi|452207450|ref|YP_007487572.1| - 1.8e-14 53.2 0.2 2.2e-12 46.5 0.1 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|452207450|ref|YP_007487572.1| - 5e-11 42.0 0.1 9.2e-11 41.2 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR PF01047.17 gi|452207450|ref|YP_007487572.1| - 5.7e-06 25.9 0.0 9.9e-06 25.1 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|452207450|ref|YP_007487572.1| - 0.0003 21.0 0.0 0.00089 19.5 0.0 1.8 2 0 0 2 2 2 1 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|452207450|ref|YP_007487572.1| - 0.0004 19.9 0.2 0.0013 18.3 0.0 1.9 2 1 0 2 2 2 1 MarR family GntR PF00392.16 gi|452207450|ref|YP_007487572.1| - 0.0015 17.9 0.0 0.0027 17.1 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family TrmB PF01978.14 gi|452207450|ref|YP_007487572.1| - 0.0016 18.1 0.0 0.0038 16.9 0.0 1.6 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_34 PF13601.1 gi|452207450|ref|YP_007487572.1| - 0.0027 17.7 0.0 0.0049 16.8 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain PaaX PF07848.7 gi|452207450|ref|YP_007487572.1| - 0.011 15.7 0.0 0.016 15.1 0.0 1.3 1 0 0 1 1 1 0 PaaX-like protein Penicillinase_R PF03965.11 gi|452207450|ref|YP_007487572.1| - 0.011 15.8 0.0 0.019 15.0 0.0 1.3 1 0 0 1 1 1 0 Penicillinase repressor DUF4423 PF14394.1 gi|452207450|ref|YP_007487572.1| - 0.015 14.8 0.0 0.023 14.2 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_24 PF13412.1 gi|452207450|ref|YP_007487572.1| - 0.027 13.8 0.0 1 8.7 0.0 2.8 3 0 0 3 3 3 0 Winged helix-turn-helix DNA-binding PAX PF00292.13 gi|452207450|ref|YP_007487572.1| - 0.027 14.1 0.0 0.04 13.6 0.0 1.2 1 0 0 1 1 1 0 'Paired box' domain DUF2250 PF10007.4 gi|452207450|ref|YP_007487572.1| - 0.034 14.0 0.1 0.079 12.8 0.0 1.7 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_Crp_2 PF13545.1 gi|452207450|ref|YP_007487572.1| - 0.039 13.7 0.0 0.15 11.8 0.0 1.9 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain RP-C PF03428.8 gi|452207450|ref|YP_007487572.1| - 0.045 13.1 0.0 0.087 12.2 0.0 1.4 1 0 0 1 1 1 0 Replication protein C N-terminal domain DUF2513 PF10711.4 gi|452207450|ref|YP_007487572.1| - 0.072 13.1 0.0 0.14 12.2 0.0 1.6 2 0 0 2 2 1 0 Hypothetical protein (DUF2513) DUF480 PF04337.7 gi|452207450|ref|YP_007487572.1| - 0.12 12.2 0.0 0.23 11.3 0.0 1.5 2 0 0 2 2 1 0 Protein of unknown function, DUF480 DUF2610 PF11020.3 gi|452207450|ref|YP_007487572.1| - 0.14 11.9 0.0 0.48 10.2 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF2610) SBF PF01758.11 gi|452207452|ref|YP_007487574.1| - 7.9e-45 152.5 10.3 7.9e-45 152.5 7.1 2.2 2 0 0 2 2 2 1 Sodium Bile acid symporter family Methyltransf_31 PF13847.1 gi|452207453|ref|YP_007487575.1| - 3.1e-38 130.7 0.0 5e-38 130.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|452207453|ref|YP_007487575.1| - 1.1e-23 83.5 0.1 3.3e-23 81.9 0.0 1.9 2 0 0 2 2 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|452207453|ref|YP_007487575.1| - 3.3e-20 72.2 0.0 1.1e-18 67.1 0.0 2.2 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_18 PF12847.2 gi|452207453|ref|YP_007487575.1| - 5.6e-18 65.5 0.1 1.2e-17 64.4 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|452207453|ref|YP_007487575.1| - 1.4e-15 57.4 0.3 4.3e-15 55.9 0.0 2.0 3 0 0 3 3 2 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|452207453|ref|YP_007487575.1| - 6.9e-13 48.6 0.0 1.1e-12 48.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|452207453|ref|YP_007487575.1| - 8.8e-13 48.5 0.0 2.3e-12 47.2 0.0 1.8 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|452207453|ref|YP_007487575.1| - 4.4e-12 46.0 0.0 7.6e-12 45.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|452207453|ref|YP_007487575.1| - 7.5e-11 41.9 0.0 1.3e-10 41.1 0.0 1.4 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MTS PF05175.9 gi|452207453|ref|YP_007487575.1| - 3.2e-09 36.3 0.0 6.3e-09 35.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.8 gi|452207453|ref|YP_007487575.1| - 1.2e-08 34.4 0.1 3.4e-08 32.9 0.1 1.6 2 0 0 2 2 2 1 Ribosomal protein L11 methyltransferase (PrmA) UPF0020 PF01170.13 gi|452207453|ref|YP_007487575.1| - 3.4e-05 23.4 0.0 6.4e-05 22.5 0.0 1.4 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_8 PF05148.10 gi|452207453|ref|YP_007487575.1| - 4.3e-05 23.2 0.1 0.00011 21.8 0.1 1.7 1 1 0 1 1 1 1 Hypothetical methyltransferase Methyltransf_3 PF01596.12 gi|452207453|ref|YP_007487575.1| - 0.00018 20.6 0.0 0.00043 19.3 0.0 1.6 1 1 0 1 1 1 1 O-methyltransferase CMAS PF02353.15 gi|452207453|ref|YP_007487575.1| - 0.00033 19.8 0.0 0.00053 19.1 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_32 PF13679.1 gi|452207453|ref|YP_007487575.1| - 0.00054 19.6 0.0 0.001 18.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_24 PF13578.1 gi|452207453|ref|YP_007487575.1| - 0.015 16.0 0.1 0.063 14.1 0.0 2.0 3 0 0 3 3 2 0 Methyltransferase domain Methyltransf_15 PF09445.5 gi|452207453|ref|YP_007487575.1| - 0.02 14.4 0.0 0.026 14.0 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Met_10 PF02475.11 gi|452207453|ref|YP_007487575.1| - 0.043 13.4 0.0 0.069 12.7 0.0 1.3 1 0 0 1 1 1 0 Met-10+ like-protein ADH_zinc_N PF00107.21 gi|452207453|ref|YP_007487575.1| - 0.059 12.9 0.1 1.1 8.7 0.0 2.6 1 1 1 2 2 2 0 Zinc-binding dehydrogenase FtsJ PF01728.14 gi|452207453|ref|YP_007487575.1| - 0.089 12.7 0.0 0.19 11.7 0.0 1.7 1 1 0 1 1 1 0 FtsJ-like methyltransferase Methyltransf_4 PF02390.12 gi|452207453|ref|YP_007487575.1| - 0.18 10.8 0.0 0.5 9.3 0.0 1.7 2 0 0 2 2 2 0 Putative methyltransferase LMWPc PF01451.16 gi|452207454|ref|YP_007487576.1| - 3.1e-29 102.0 0.1 3.7e-29 101.8 0.0 1.1 1 0 0 1 1 1 1 Low molecular weight phosphotyrosine protein phosphatase HTH_5 PF01022.15 gi|452207455|ref|YP_007487577.1| - 1.5e-11 43.7 0.0 3e-11 42.7 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|452207455|ref|YP_007487577.1| - 6.3e-09 35.5 0.2 4.5e-08 32.7 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain TrmB PF01978.14 gi|452207455|ref|YP_007487577.1| - 9.8e-05 21.9 0.0 0.00018 21.1 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|452207455|ref|YP_007487577.1| - 0.00024 20.7 0.0 0.003 17.2 0.0 2.4 2 1 0 2 2 2 1 MarR family DUF2250 PF10007.4 gi|452207455|ref|YP_007487577.1| - 0.0025 17.6 0.0 0.052 13.4 0.0 2.2 1 1 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_27 PF13463.1 gi|452207455|ref|YP_007487577.1| - 0.0043 17.3 0.0 0.0085 16.3 0.0 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|452207455|ref|YP_007487577.1| - 0.0078 15.8 0.0 0.023 14.3 0.0 1.9 1 1 0 1 1 1 1 MarR family Mago-bind PF09282.5 gi|452207455|ref|YP_007487577.1| - 0.024 14.1 0.5 0.045 13.3 0.3 1.4 1 0 0 1 1 1 0 Mago binding PaaX PF07848.7 gi|452207455|ref|YP_007487577.1| - 0.029 14.3 0.0 0.051 13.5 0.0 1.4 1 0 0 1 1 1 0 PaaX-like protein HTH_34 PF13601.1 gi|452207455|ref|YP_007487577.1| - 0.04 13.9 0.0 0.073 13.1 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF742 PF05331.6 gi|452207455|ref|YP_007487577.1| - 0.041 13.4 0.0 0.044 13.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF742) Mrr_N PF14338.1 gi|452207455|ref|YP_007487577.1| - 0.05 13.6 0.0 0.11 12.6 0.0 1.6 1 0 0 1 1 1 0 Mrr N-terminal domain SLH PF00395.15 gi|452207455|ref|YP_007487577.1| - 0.071 12.8 0.0 0.1 12.3 0.0 1.3 1 0 0 1 1 1 0 S-layer homology domain GntR PF00392.16 gi|452207455|ref|YP_007487577.1| - 0.13 11.7 0.0 0.28 10.6 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family Molybdopterin PF00384.17 gi|452207456|ref|YP_007487578.1| - 1.4e-75 254.6 0.0 1.8e-75 254.3 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|452207456|ref|YP_007487578.1| - 1.5e-30 105.2 0.1 3e-30 104.2 0.1 1.5 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.11 gi|452207456|ref|YP_007487578.1| - 0.012 15.4 0.0 0.031 14.0 0.0 1.8 1 0 0 1 1 1 0 Molybdopterin oxidoreductase Fe4S4 domain ABC_tran PF00005.22 gi|452207457|ref|YP_007487579.1| - 7e-34 117.0 0.0 1.1e-33 116.4 0.0 1.3 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.5 gi|452207457|ref|YP_007487579.1| - 1.3e-09 37.9 0.4 4.7e-09 36.1 0.3 2.0 1 0 0 1 1 1 1 TOBE domain AAA_21 PF13304.1 gi|452207457|ref|YP_007487579.1| - 5.6e-06 26.5 0.0 0.021 14.7 0.0 2.1 1 1 0 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|452207457|ref|YP_007487579.1| - 0.00037 20.6 0.2 0.0016 18.5 0.1 1.9 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|452207457|ref|YP_007487579.1| - 0.0011 18.9 1.5 0.0033 17.4 0.9 2.0 1 1 0 1 1 1 1 AAA ATPase domain AAA_33 PF13671.1 gi|452207457|ref|YP_007487579.1| - 0.0046 16.8 0.1 0.021 14.6 0.1 2.0 1 1 0 1 1 1 1 AAA domain Rad17 PF03215.10 gi|452207457|ref|YP_007487579.1| - 0.0099 14.5 0.0 0.015 14.0 0.0 1.2 1 0 0 1 1 1 1 Rad17 cell cycle checkpoint protein SbcCD_C PF13558.1 gi|452207457|ref|YP_007487579.1| - 0.011 15.5 0.3 0.065 13.1 0.2 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA PF00004.24 gi|452207457|ref|YP_007487579.1| - 0.014 15.6 0.1 0.037 14.2 0.1 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) SMC_N PF02463.14 gi|452207457|ref|YP_007487579.1| - 0.036 13.2 0.0 0.44 9.7 0.0 2.0 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_19 PF13245.1 gi|452207457|ref|YP_007487579.1| - 0.044 13.5 0.0 0.11 12.2 0.0 1.6 1 0 0 1 1 1 0 Part of AAA domain DUF258 PF03193.11 gi|452207457|ref|YP_007487579.1| - 0.052 12.7 0.0 0.092 11.9 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_28 PF13521.1 gi|452207457|ref|YP_007487579.1| - 0.058 13.3 0.7 0.95 9.4 0.1 2.3 2 0 0 2 2 2 0 AAA domain AAA_17 PF13207.1 gi|452207457|ref|YP_007487579.1| - 0.11 13.3 0.2 0.34 11.7 0.1 1.9 1 1 0 1 1 1 0 AAA domain NB-ARC PF00931.17 gi|452207457|ref|YP_007487579.1| - 0.2 10.5 0.0 0.3 9.9 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain AAA_15 PF13175.1 gi|452207457|ref|YP_007487579.1| - 0.29 10.1 0.0 0.63 9.0 0.0 1.4 2 0 0 2 2 2 0 AAA ATPase domain Thiolase_C PF02803.13 gi|452207458|ref|YP_007487580.1| - 1.2e-06 27.8 0.1 2.8e-06 26.7 0.1 1.5 1 0 0 1 1 1 1 Thiolase, C-terminal domain Thiolase_N PF00108.18 gi|452207458|ref|YP_007487580.1| - 0.00086 18.3 0.8 0.0027 16.7 0.1 2.1 2 1 1 3 3 3 1 Thiolase, N-terminal domain Ketoacyl-synt_C PF02801.17 gi|452207458|ref|YP_007487580.1| - 0.0011 18.7 0.8 0.36 10.6 0.0 3.4 3 0 0 3 3 3 1 Beta-ketoacyl synthase, C-terminal domain DUF35 PF01796.12 gi|452207459|ref|YP_007487581.1| - 1.6e-07 31.3 0.9 2.6e-07 30.7 0.5 1.4 1 1 0 1 1 1 1 DUF35 OB-fold domain FlgN PF05130.7 gi|452207460|ref|YP_007487582.1| - 0.096 12.9 1.9 5.7 7.1 0.3 2.4 1 1 0 2 2 2 0 FlgN protein PilJ PF13675.1 gi|452207460|ref|YP_007487582.1| - 0.16 12.2 4.5 0.41 10.9 0.9 2.7 1 1 2 3 3 3 0 Type IV pili methyl-accepting chemotaxis transducer N-term TPR_14 PF13428.1 gi|452207460|ref|YP_007487582.1| - 1.4 9.7 7.3 0.21 12.3 0.8 2.7 2 1 0 2 2 2 0 Tetratricopeptide repeat Ferritin PF00210.19 gi|452207462|ref|YP_007487584.1| - 5e-25 87.9 1.4 5.9e-25 87.6 1.0 1.1 1 0 0 1 1 1 1 Ferritin-like domain Tautomerase PF01361.16 gi|452207462|ref|YP_007487584.1| - 0.031 13.8 0.0 0.08 12.5 0.0 1.7 1 0 0 1 1 1 0 Tautomerase enzyme DivIVA PF05103.8 gi|452207462|ref|YP_007487584.1| - 0.049 13.6 5.2 2.3 8.2 0.1 3.0 2 1 1 3 3 3 0 DivIVA protein DUF892 PF05974.7 gi|452207462|ref|YP_007487584.1| - 0.095 12.5 0.3 0.095 12.5 0.2 1.9 3 0 0 3 3 3 0 Domain of unknown function (DUF892) HisKA PF00512.20 gi|452207462|ref|YP_007487584.1| - 0.17 11.9 1.2 2 8.4 0.2 2.7 2 2 1 3 3 3 0 His Kinase A (phospho-acceptor) domain Ribosomal_L7Ae PF01248.21 gi|452207463|ref|YP_007487585.1| - 7e-24 83.1 0.0 8.5e-24 82.8 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family PELOTA_1 PF15608.1 gi|452207463|ref|YP_007487585.1| - 0.012 15.3 0.0 0.018 14.7 0.0 1.3 1 0 0 1 1 1 0 PELOTA RNA binding domain eRF1_3 PF03465.10 gi|452207463|ref|YP_007487585.1| - 0.02 15.1 0.1 0.022 15.0 0.1 1.3 1 0 0 1 1 1 0 eRF1 domain 3 DUF1269 PF06897.7 gi|452207463|ref|YP_007487585.1| - 0.16 12.0 1.8 9.4 6.3 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1269) Ribosomal_S28e PF01200.13 gi|452207464|ref|YP_007487586.1| - 4e-28 96.9 1.3 4.1e-28 96.9 0.9 1.0 1 0 0 1 1 1 1 Ribosomal protein S28e Ribosomal_L24e PF01246.15 gi|452207465|ref|YP_007487587.1| - 1.3e-21 76.2 0.0 1.8e-21 75.7 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L24e NDK PF00334.14 gi|452207466|ref|YP_007487588.1| - 8.7e-57 190.6 0.0 9.8e-57 190.5 0.0 1.0 1 0 0 1 1 1 1 Nucleoside diphosphate kinase Meth_synt_2 PF01717.13 gi|452207467|ref|YP_007487589.1| - 4.6e-79 265.7 0.0 5.6e-79 265.4 0.0 1.0 1 0 0 1 1 1 1 Cobalamin-independent synthase, Catalytic domain Meth_synt_1 PF08267.7 gi|452207467|ref|YP_007487589.1| - 2.6e-21 76.2 0.0 6.8e-21 74.8 0.0 1.6 2 0 0 2 2 2 1 Cobalamin-independent synthase, N-terminal domain URO-D PF01208.12 gi|452207467|ref|YP_007487589.1| - 0.00085 18.3 0.0 0.0012 17.8 0.0 1.2 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) Meth_synt_1 PF08267.7 gi|452207468|ref|YP_007487590.1| - 7.9e-26 91.0 0.0 2.8e-22 79.3 0.0 2.1 1 1 1 2 2 2 2 Cobalamin-independent synthase, N-terminal domain Meth_synt_2 PF01717.13 gi|452207468|ref|YP_007487590.1| - 1.1e-14 54.2 0.0 1.3e-14 53.9 0.0 1.1 1 0 0 1 1 1 1 Cobalamin-independent synthase, Catalytic domain Methyltransf_26 PF13659.1 gi|452207469|ref|YP_007487591.1| - 5.1e-17 61.9 0.1 7.9e-17 61.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|452207469|ref|YP_007487591.1| - 1.1e-10 41.1 0.0 1.5e-10 40.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_11 PF08241.7 gi|452207469|ref|YP_007487591.1| - 8.7e-08 32.5 0.1 3.8e-06 27.2 0.0 2.3 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|452207469|ref|YP_007487591.1| - 6.2e-07 29.2 0.0 1.9e-06 27.6 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|452207469|ref|YP_007487591.1| - 1.2e-06 28.1 0.0 1.6e-06 27.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain UPF0146 PF03686.8 gi|452207469|ref|YP_007487591.1| - 2e-05 24.4 0.1 3.3e-05 23.6 0.0 1.2 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0146) Methyltransf_25 PF13649.1 gi|452207469|ref|YP_007487591.1| - 2.7e-05 24.4 0.0 5e-05 23.5 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|452207469|ref|YP_007487591.1| - 3e-05 24.4 0.0 0.00018 21.9 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|452207469|ref|YP_007487591.1| - 4.6e-05 23.9 0.0 8.5e-05 23.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_3 PF01596.12 gi|452207469|ref|YP_007487591.1| - 0.0049 15.9 0.0 0.0067 15.5 0.0 1.1 1 0 0 1 1 1 1 O-methyltransferase TrkA_N PF02254.13 gi|452207469|ref|YP_007487591.1| - 0.0091 15.9 0.1 0.14 12.1 0.0 2.2 2 0 0 2 2 2 1 TrkA-N domain MetW PF07021.7 gi|452207469|ref|YP_007487591.1| - 0.013 14.9 0.0 0.018 14.4 0.0 1.2 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW Methyltransf_9 PF08003.6 gi|452207469|ref|YP_007487591.1| - 0.023 13.4 0.0 0.029 13.0 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) Methyltransf_32 PF13679.1 gi|452207469|ref|YP_007487591.1| - 0.068 12.8 0.0 0.099 12.3 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain PCMT PF01135.14 gi|452207469|ref|YP_007487591.1| - 0.071 12.6 0.0 0.083 12.4 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) CMAS PF02353.15 gi|452207469|ref|YP_007487591.1| - 0.1 11.6 0.0 0.15 11.1 0.0 1.3 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase AlaDh_PNT_C PF01262.16 gi|452207469|ref|YP_007487591.1| - 0.14 11.7 0.0 0.2 11.2 0.0 1.2 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain RrnaAD PF00398.15 gi|452207471|ref|YP_007487593.1| - 5.5e-45 153.4 0.0 6.7e-45 153.1 0.0 1.0 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_26 PF13659.1 gi|452207471|ref|YP_007487593.1| - 1.1e-07 31.8 0.3 1.6e-07 31.3 0.2 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|452207471|ref|YP_007487593.1| - 0.0014 19.1 0.0 0.003 18.1 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|452207471|ref|YP_007487593.1| - 0.047 14.1 0.0 0.12 12.8 0.0 1.7 2 0 0 2 2 2 0 Methyltransferase domain NodS PF05401.6 gi|452207471|ref|YP_007487593.1| - 0.16 11.3 0.0 0.33 10.2 0.0 1.5 1 0 0 1 1 1 0 Nodulation protein S (NodS) Spermine_synth PF01564.12 gi|452207471|ref|YP_007487593.1| - 0.19 10.6 0.0 0.27 10.1 0.0 1.2 1 0 0 1 1 1 0 Spermine/spermidine synthase DUF655 PF04919.7 gi|452207472|ref|YP_007487594.1| - 1.2e-60 204.2 0.0 1.4e-60 204.0 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF655) HHH_3 PF12836.2 gi|452207472|ref|YP_007487594.1| - 0.0019 18.0 0.1 0.0059 16.5 0.0 1.8 1 1 1 2 2 2 1 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|452207472|ref|YP_007487594.1| - 0.0053 16.9 0.9 0.093 12.9 0.1 2.4 1 1 1 2 2 2 2 Helix-hairpin-helix domain HHH_6 PF14579.1 gi|452207472|ref|YP_007487594.1| - 0.016 15.2 0.0 0.031 14.3 0.0 1.6 1 0 0 1 1 1 0 Helix-hairpin-helix motif RNA_pol_Rpb4 PF03874.11 gi|452207473|ref|YP_007487595.1| - 1.9e-15 56.8 1.3 2.2e-15 56.6 0.9 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb4 Ribosomal_L21e PF01157.13 gi|452207474|ref|YP_007487596.1| - 4.4e-32 109.8 0.0 4.8e-32 109.6 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L21e EF1_GNE PF00736.14 gi|452207475|ref|YP_007487597.1| - 5.8e-22 77.1 0.1 6.1e-22 77.1 0.1 1.0 1 0 0 1 1 1 1 EF-1 guanine nucleotide exchange domain HMA PF00403.21 gi|452207475|ref|YP_007487597.1| - 0.04 14.0 0.1 0.31 11.2 0.0 2.0 2 0 0 2 2 2 0 Heavy-metal-associated domain DUF1610 PF07754.6 gi|452207476|ref|YP_007487598.1| - 6.2e-10 39.0 14.9 5.2e-05 23.2 3.4 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF1610) zf-Mss51 PF13824.1 gi|452207476|ref|YP_007487598.1| - 0.00026 20.7 11.4 0.23 11.3 1.7 3.0 1 1 1 2 2 2 2 Zinc-finger of mitochondrial splicing suppressor 51 OrfB_Zn_ribbon PF07282.6 gi|452207476|ref|YP_007487598.1| - 0.0022 17.5 10.1 0.028 14.0 3.7 2.1 1 1 0 2 2 2 1 Putative transposase DNA-binding domain DZR PF12773.2 gi|452207476|ref|YP_007487598.1| - 0.0026 17.5 11.6 0.52 10.1 8.3 2.4 1 1 0 1 1 1 1 Double zinc ribbon C1_3 PF07649.7 gi|452207476|ref|YP_007487598.1| - 0.005 16.8 3.2 0.005 16.8 2.2 2.6 1 1 0 2 2 2 1 C1-like domain zf-HIT PF04438.11 gi|452207476|ref|YP_007487598.1| - 0.0099 15.4 13.9 0.2 11.3 1.0 3.0 1 1 1 2 2 2 2 HIT zinc finger PolC_DP2 PF03833.8 gi|452207476|ref|YP_007487598.1| - 0.036 11.7 6.3 0.038 11.6 4.4 1.0 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 zf-UBP PF02148.14 gi|452207476|ref|YP_007487598.1| - 0.036 14.1 7.4 0.092 12.8 1.0 2.4 2 1 0 2 2 2 0 Zn-finger in ubiquitin-hydrolases and other protein Prok-RING_1 PF14446.1 gi|452207476|ref|YP_007487598.1| - 0.11 12.1 10.4 0.11 12.1 0.8 2.3 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 DUF2296 PF10058.4 gi|452207476|ref|YP_007487598.1| - 0.15 11.8 8.8 6.1 6.6 0.0 3.7 2 1 2 4 4 4 0 Predicted integral membrane metal-binding protein (DUF2296) zf-MYND PF01753.13 gi|452207476|ref|YP_007487598.1| - 0.21 11.4 6.6 3.6 7.5 4.8 2.3 1 1 0 1 1 1 0 MYND finger NMDAR2_C PF10565.4 gi|452207476|ref|YP_007487598.1| - 0.22 10.1 6.1 0.24 10.0 4.2 1.0 1 0 0 1 1 1 0 N-methyl D-aspartate receptor 2B3 C-terminus zf-RING_5 PF14634.1 gi|452207476|ref|YP_007487598.1| - 0.24 11.1 10.6 0.85 9.3 0.9 2.3 2 0 0 2 2 2 0 zinc-RING finger domain Zn-ribbon_8 PF09723.5 gi|452207476|ref|YP_007487598.1| - 0.29 11.1 19.2 5.8 6.9 3.0 4.0 1 1 3 4 4 4 0 Zinc ribbon domain FYVE_2 PF02318.11 gi|452207476|ref|YP_007487598.1| - 0.3 10.9 5.7 0.33 10.8 3.9 1.0 1 0 0 1 1 1 0 FYVE-type zinc finger zf-H2C2_2 PF13465.1 gi|452207476|ref|YP_007487598.1| - 0.31 11.4 16.7 1.2 9.5 0.4 3.9 1 1 2 3 3 3 0 Zinc-finger double domain Ribosomal_L37ae PF01780.14 gi|452207476|ref|YP_007487598.1| - 0.46 10.3 7.1 13 5.7 4.9 2.7 1 1 0 1 1 1 0 Ribosomal L37ae protein family zf-ribbon_3 PF13248.1 gi|452207476|ref|YP_007487598.1| - 0.52 9.5 15.0 1.1 8.5 0.2 3.7 1 1 1 3 3 3 0 zinc-ribbon domain C1_1 PF00130.17 gi|452207476|ref|YP_007487598.1| - 0.63 9.8 8.6 1.1 9.0 0.3 2.3 1 1 1 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Zn_Tnp_IS91 PF14319.1 gi|452207476|ref|YP_007487598.1| - 0.66 9.5 7.6 1 8.9 5.3 1.3 1 0 0 1 1 1 0 Transposase zinc-binding domain zinc_ribbon_2 PF13240.1 gi|452207476|ref|YP_007487598.1| - 0.8 9.2 16.8 0.97 9.0 3.1 3.7 2 2 1 3 3 3 0 zinc-ribbon domain HypA PF01155.14 gi|452207476|ref|YP_007487598.1| - 0.94 9.1 10.2 0.47 10.1 1.7 2.1 1 1 1 2 2 2 0 Hydrogenase expression/synthesis hypA family DNA_ligase_ZBD PF03119.11 gi|452207476|ref|YP_007487598.1| - 0.99 9.1 8.8 0.61 9.8 0.5 2.7 2 1 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain IBR PF01485.16 gi|452207476|ref|YP_007487598.1| - 1 9.3 10.2 7.9 6.4 7.1 2.1 1 1 0 1 1 1 0 IBR domain Zn_Tnp_IS1595 PF12760.2 gi|452207476|ref|YP_007487598.1| - 1.1 9.1 17.4 1.2e+02 2.5 12.1 3.5 1 1 0 1 1 1 0 Transposase zinc-ribbon domain DUF2387 PF09526.5 gi|452207476|ref|YP_007487598.1| - 1.2 9.1 9.0 9.5 6.2 0.1 2.2 1 1 1 2 2 2 0 Probable metal-binding protein (DUF2387) zf-tcix PF14952.1 gi|452207476|ref|YP_007487598.1| - 1.3 8.3 14.3 17 4.8 0.0 3.5 2 1 1 3 3 3 0 Putative treble-clef, zinc-finger, Zn-binding TFIIS_C PF01096.13 gi|452207476|ref|YP_007487598.1| - 1.6 8.4 15.4 3.2 7.4 0.3 4.0 2 1 2 4 4 4 0 Transcription factor S-II (TFIIS) zf-UBR PF02207.15 gi|452207476|ref|YP_007487598.1| - 1.6 8.5 12.4 3.4 7.4 6.7 2.4 1 1 1 2 2 2 0 Putative zinc finger in N-recognin (UBR box) zinc-ribbons_6 PF07191.7 gi|452207476|ref|YP_007487598.1| - 1.7 8.4 10.6 6.3 6.6 0.6 2.2 1 1 1 2 2 2 0 zinc-ribbons zf-C2H2_6 PF13912.1 gi|452207476|ref|YP_007487598.1| - 1.9 8.4 14.4 3.7 7.6 0.8 3.9 4 0 0 4 4 4 0 C2H2-type zinc finger DNA_RNApol_7kD PF03604.8 gi|452207476|ref|YP_007487598.1| - 2 7.9 13.1 4 6.9 1.8 3.3 2 2 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit RNHCP PF12647.2 gi|452207476|ref|YP_007487598.1| - 2.1 8.2 10.4 1.6 8.6 1.1 2.5 1 1 1 2 2 2 0 RNHCP domain VP_N-CPKC PF11475.3 gi|452207476|ref|YP_007487598.1| - 2.3 7.8 5.9 2.3 7.8 0.1 2.4 1 1 1 2 2 2 0 Virion protein N terminal domain zf-B_box PF00643.19 gi|452207476|ref|YP_007487598.1| - 3.1 7.7 10.4 33 4.4 7.2 2.4 1 1 0 1 1 1 0 B-box zinc finger FYVE PF01363.16 gi|452207476|ref|YP_007487598.1| - 3.2 7.7 9.2 7.5 6.5 6.4 1.7 1 1 0 1 1 1 0 FYVE zinc finger zf-C2H2 PF00096.21 gi|452207476|ref|YP_007487598.1| - 4 7.9 15.4 2.5 8.6 0.4 3.6 4 0 0 4 4 3 0 Zinc finger, C2H2 type zf-C3HC4_4 PF15227.1 gi|452207476|ref|YP_007487598.1| - 4.1 7.3 11.1 0.83 9.5 1.3 2.5 2 1 0 2 2 2 0 zinc finger of C3HC4-type, RING zinc_ribbon_5 PF13719.1 gi|452207476|ref|YP_007487598.1| - 4.4 6.9 13.4 13 5.4 0.1 3.9 3 1 1 4 4 4 0 zinc-ribbon domain C1_4 PF07975.7 gi|452207476|ref|YP_007487598.1| - 4.6 7.3 11.8 87 3.2 1.2 2.9 1 1 1 2 2 2 0 TFIIH C1-like domain NMD3 PF04981.8 gi|452207476|ref|YP_007487598.1| - 5.1 6.1 8.9 6.2 5.8 6.2 1.0 1 0 0 1 1 1 0 NMD3 family A2L_zn_ribbon PF08792.5 gi|452207476|ref|YP_007487598.1| - 5.7 6.5 17.1 13 5.3 3.6 3.8 2 2 0 2 2 2 0 A2L zinc ribbon domain UPF0547 PF10571.4 gi|452207476|ref|YP_007487598.1| - 6.2 6.6 15.3 0.42 10.3 5.6 2.9 2 1 0 2 2 1 0 Uncharacterised protein family UPF0547 zf-AN1 PF01428.11 gi|452207476|ref|YP_007487598.1| - 7.8 6.4 13.2 2.4 8.1 1.6 2.9 1 1 1 3 3 3 0 AN1-like Zinc finger DUF2752 PF10825.3 gi|452207476|ref|YP_007487598.1| - 9 6.4 9.3 18 5.4 0.4 3.1 2 1 1 3 3 3 0 Protein of unknown function (DUF2752) DUF2072 PF09845.4 gi|452207476|ref|YP_007487598.1| - 9 6.2 11.5 2.3 8.1 4.2 2.0 1 1 1 2 2 2 0 Zn-ribbon containing protein (DUF2072) C1_2 PF03107.11 gi|452207476|ref|YP_007487598.1| - 9.3 6.4 11.9 5.6 7.1 3.6 2.9 1 1 1 2 2 2 0 C1 domain GNAT_acetyltr_2 PF13718.1 gi|452207477|ref|YP_007487599.1| - 5.8e-51 172.6 0.0 1.2e-50 171.5 0.0 1.5 1 1 0 1 1 1 1 GNAT acetyltransferase 2 Helicase_RecD PF05127.9 gi|452207477|ref|YP_007487599.1| - 2e-49 167.6 0.0 3.1e-49 166.9 0.0 1.3 1 0 0 1 1 1 1 Helicase DUF1726 PF08351.6 gi|452207477|ref|YP_007487599.1| - 4.5e-20 71.1 0.0 1.3e-19 69.6 0.0 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF1726) AAA_30 PF13604.1 gi|452207477|ref|YP_007487599.1| - 4.1e-09 36.2 0.2 4.1e-09 36.2 0.2 1.8 3 0 0 3 3 3 1 AAA domain tRNA_bind_2 PF13725.1 gi|452207477|ref|YP_007487599.1| - 1e-05 25.5 0.0 2.2e-05 24.4 0.0 1.5 1 0 0 1 1 1 1 Possible tRNA binding domain Acetyltransf_7 PF13508.1 gi|452207477|ref|YP_007487599.1| - 0.00018 21.6 0.0 0.00049 20.2 0.0 1.8 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain AAA_19 PF13245.1 gi|452207477|ref|YP_007487599.1| - 0.00023 20.8 0.3 0.00023 20.8 0.2 3.5 3 1 0 3 3 3 1 Part of AAA domain Fer4_7 PF12838.2 gi|452207478|ref|YP_007487600.1| - 6.8e-12 45.5 24.4 1.7e-07 31.4 5.8 1.9 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4 PF00037.22 gi|452207478|ref|YP_007487600.1| - 1.3e-10 40.4 15.0 2e-06 27.1 3.4 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|452207478|ref|YP_007487600.1| - 2.2e-09 37.4 7.4 3.1e-09 36.9 5.1 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|452207478|ref|YP_007487600.1| - 1.4e-07 31.0 15.4 1.5e-05 24.6 3.5 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|452207478|ref|YP_007487600.1| - 3.3e-07 29.9 19.6 6.3e-05 22.6 6.0 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|452207478|ref|YP_007487600.1| - 1.2e-06 28.2 9.2 3.3e-06 26.8 6.4 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|452207478|ref|YP_007487600.1| - 4.1e-06 26.7 12.3 3.3e-05 23.8 5.1 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|452207478|ref|YP_007487600.1| - 4.9e-06 26.8 0.9 0.035 14.4 0.3 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|452207478|ref|YP_007487600.1| - 5.3e-06 26.7 3.0 0.0004 20.7 0.6 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|452207478|ref|YP_007487600.1| - 1.4e-05 24.7 11.9 0.002 17.9 2.7 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|452207478|ref|YP_007487600.1| - 1.5e-05 25.6 6.7 0.00041 21.0 0.6 2.5 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|452207478|ref|YP_007487600.1| - 2.3e-05 24.3 7.9 0.00015 21.8 1.5 2.2 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_3 PF12798.2 gi|452207478|ref|YP_007487600.1| - 0.0026 18.2 5.2 0.0026 18.2 3.6 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_15 PF13459.1 gi|452207478|ref|YP_007487600.1| - 0.0066 16.9 10.7 0.32 11.5 1.0 2.4 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|452207478|ref|YP_007487600.1| - 0.028 14.7 14.4 0.44 10.9 10.0 2.3 1 1 0 1 1 1 0 4Fe-4S single cluster domain tRNA-synt_1c PF00749.16 gi|452207479|ref|YP_007487601.1| - 5.7e-50 169.7 0.0 7.2e-50 169.4 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1c_C PF03950.13 gi|452207479|ref|YP_007487601.1| - 1.6e-19 70.2 0.0 4.2e-19 68.8 0.0 1.7 1 1 0 1 1 1 1 tRNA synthetases class I (E and Q), anti-codon binding domain polyprenyl_synt PF00348.12 gi|452207480|ref|YP_007487602.1| - 4e-61 206.1 0.0 5.1e-61 205.7 0.0 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase Lactamase_B PF00753.22 gi|452207481|ref|YP_007487603.1| - 3.7e-12 46.2 1.1 7.5e-12 45.3 0.4 1.9 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|452207481|ref|YP_007487603.1| - 3.6e-07 29.9 0.2 4.8e-06 26.2 0.1 2.1 2 0 0 2 2 2 1 Beta-lactamase superfamily domain RMMBL PF07521.7 gi|452207481|ref|YP_007487603.1| - 0.00076 19.2 0.8 0.0019 17.9 0.1 2.0 2 0 0 2 2 2 1 RNA-metabolising metallo-beta-lactamase DegT_DnrJ_EryC1 PF01041.12 gi|452207481|ref|YP_007487603.1| - 0.15 11.0 0.1 5.6 5.8 0.0 2.1 2 0 0 2 2 2 0 DegT/DnrJ/EryC1/StrS aminotransferase family AA_kinase PF00696.23 gi|452207482|ref|YP_007487604.1| - 2.4e-33 115.6 5.9 3e-33 115.3 4.1 1.0 1 0 0 1 1 1 1 Amino acid kinase family AP_endonuc_2 PF01261.19 gi|452207482|ref|YP_007487604.1| - 0.012 14.8 1.3 0.47 9.7 0.9 2.1 1 1 0 1 1 1 0 Xylose isomerase-like TIM barrel GHMP_kinases_N PF00288.21 gi|452207483|ref|YP_007487605.1| - 4.5e-16 58.6 0.6 9.8e-16 57.5 0.4 1.6 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|452207483|ref|YP_007487605.1| - 4e-14 52.5 2.8 7.2e-14 51.7 0.2 2.2 2 0 0 2 2 2 1 GHMP kinases C terminal GalKase_gal_bdg PF10509.4 gi|452207483|ref|YP_007487605.1| - 0.00034 19.8 0.0 0.00072 18.7 0.0 1.6 1 0 0 1 1 1 1 Galactokinase galactose-binding signature NosL PF05573.7 gi|452207484|ref|YP_007487606.1| - 6.4e-12 45.4 0.0 9.5e-12 44.8 0.0 1.3 1 0 0 1 1 1 1 NosL UCR_Fe-S_N PF10399.4 gi|452207484|ref|YP_007487606.1| - 0.065 12.4 0.7 0.11 11.7 0.5 1.3 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal TAT_signal PF10518.4 gi|452207484|ref|YP_007487606.1| - 0.16 12.0 1.2 0.31 11.1 0.9 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Rod_cone_degen PF15201.1 gi|452207484|ref|YP_007487606.1| - 0.83 9.5 2.6 39 4.1 2.1 2.4 2 0 0 2 2 2 0 Progressive rod-cone degeneration NUDIX PF00293.23 gi|452207485|ref|YP_007487607.1| - 0.0001 21.9 0.0 0.00016 21.3 0.0 1.3 1 0 0 1 1 1 1 NUDIX domain Neisseria_TspB PF05616.8 gi|452207485|ref|YP_007487607.1| - 3 6.1 4.3 4.4 5.5 3.0 1.3 1 0 0 1 1 1 0 Neisseria meningitidis TspB protein Ribosomal_S2 PF00318.15 gi|452207486|ref|YP_007487608.1| - 3.6e-38 130.9 0.1 2.4e-19 69.3 0.3 2.1 1 1 1 2 2 2 2 Ribosomal protein S2 Avirulence PF03377.8 gi|452207486|ref|YP_007487608.1| - 0.059 12.0 0.0 0.1 11.2 0.0 1.3 1 0 0 1 1 1 0 Xanthomonas avirulence protein, Avr/PthA Peripla_BP_2 PF01497.13 gi|452207486|ref|YP_007487608.1| - 0.25 10.4 2.6 4.8 6.2 0.1 2.9 3 0 0 3 3 3 0 Periplasmic binding protein Enolase_C PF00113.17 gi|452207487|ref|YP_007487609.1| - 5.2e-72 242.3 0.0 7e-72 241.8 0.0 1.1 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.11 gi|452207487|ref|YP_007487609.1| - 5.5e-37 126.6 0.1 9.3e-37 125.9 0.1 1.4 1 0 0 1 1 1 1 Enolase, N-terminal domain MR_MLE PF01188.16 gi|452207487|ref|YP_007487609.1| - 0.00011 22.6 0.6 0.00025 21.5 0.1 1.9 2 0 0 2 2 2 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain MR_MLE_C PF13378.1 gi|452207487|ref|YP_007487609.1| - 0.0066 16.4 0.0 0.027 14.4 0.0 2.0 2 0 0 2 2 2 1 Enolase C-terminal domain-like MAAL_C PF07476.6 gi|452207487|ref|YP_007487609.1| - 0.07 12.0 0.0 0.14 11.0 0.0 1.4 1 0 0 1 1 1 0 Methylaspartate ammonia-lyase C-terminus RNA_pol_Rpb6 PF01192.17 gi|452207488|ref|YP_007487610.1| - 3.1e-17 62.0 0.1 3.4e-17 61.9 0.1 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb6 RNA_pol_N PF01194.12 gi|452207489|ref|YP_007487611.1| - 1.3e-28 98.7 0.2 1.4e-28 98.6 0.1 1.0 1 0 0 1 1 1 1 RNA polymerases N / 8 kDa subunit Ribosomal_S9 PF00380.14 gi|452207490|ref|YP_007487612.1| - 6e-37 126.5 0.1 6.8e-37 126.4 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S9/S16 Ribosomal_L13 PF00572.13 gi|452207491|ref|YP_007487613.1| - 3.3e-23 82.1 0.0 4e-23 81.8 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L13 Ribosomal_L18e PF00828.14 gi|452207492|ref|YP_007487614.1| - 1.6e-12 47.8 0.1 1.9e-12 47.6 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein L18e/L15 RNA_pol_A_bac PF01000.21 gi|452207493|ref|YP_007487615.1| - 1.1e-22 80.2 0.2 1.5e-21 76.6 0.0 2.5 3 1 0 3 3 3 1 RNA polymerase Rpb3/RpoA insert domain RNA_pol_L PF01193.19 gi|452207493|ref|YP_007487615.1| - 1.8e-13 49.4 0.0 2.3e-13 49.0 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Ribosomal_S11 PF00411.14 gi|452207494|ref|YP_007487616.1| - 5.6e-44 148.8 0.3 7e-44 148.5 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein S11 S4 PF01479.20 gi|452207495|ref|YP_007487617.1| - 1.9e-15 56.0 0.2 6.3e-14 51.1 0.0 2.4 2 0 0 2 2 2 1 S4 domain S4_2 PF13275.1 gi|452207495|ref|YP_007487617.1| - 0.048 13.2 0.0 0.089 12.3 0.0 1.4 1 0 0 1 1 1 0 S4 domain Ribosomal_S4 PF00163.14 gi|452207495|ref|YP_007487617.1| - 0.1 12.9 0.2 0.35 11.2 0.0 1.8 2 0 0 2 2 2 0 Ribosomal protein S4/S9 N-terminal domain Ribosomal_S13 PF00416.17 gi|452207496|ref|YP_007487618.1| - 1.4e-35 121.9 2.0 1.7e-35 121.6 1.4 1.1 1 0 0 1 1 1 1 Ribosomal protein S13/S18 ParA PF10609.4 gi|452207497|ref|YP_007487619.1| - 2.4e-35 120.2 0.0 5e-35 119.2 0.0 1.6 1 0 0 1 1 1 1 ParA/MinD ATPase like CbiA PF01656.18 gi|452207497|ref|YP_007487619.1| - 2e-19 69.7 0.0 3.4e-19 69.0 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain DUF59 PF01883.14 gi|452207497|ref|YP_007487619.1| - 1.1e-09 38.0 0.1 2.8e-09 36.8 0.1 1.7 1 0 0 1 1 1 1 Domain of unknown function DUF59 MipZ PF09140.6 gi|452207497|ref|YP_007487619.1| - 2e-08 33.6 0.0 3.4e-08 32.8 0.0 1.4 1 0 0 1 1 1 1 ATPase MipZ AAA_31 PF13614.1 gi|452207497|ref|YP_007487619.1| - 1.8e-07 31.2 0.0 1.2e-06 28.4 0.0 2.2 1 1 0 1 1 1 1 AAA domain Fer4_NifH PF00142.13 gi|452207497|ref|YP_007487619.1| - 3.5e-05 23.1 0.0 0.0027 16.9 0.1 2.2 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ArsA_ATPase PF02374.10 gi|452207497|ref|YP_007487619.1| - 6.6e-05 22.1 2.3 0.0002 20.5 0.5 2.0 2 0 0 2 2 2 1 Anion-transporting ATPase VirC1 PF07015.6 gi|452207497|ref|YP_007487619.1| - 6.8e-05 22.0 0.0 0.00013 21.1 0.0 1.4 1 0 0 1 1 1 1 VirC1 protein AAA_25 PF13481.1 gi|452207497|ref|YP_007487619.1| - 0.015 14.7 0.0 0.028 13.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain APS_kinase PF01583.15 gi|452207497|ref|YP_007487619.1| - 0.086 12.4 0.0 0.14 11.8 0.0 1.3 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_19 PF13245.1 gi|452207497|ref|YP_007487619.1| - 0.24 11.1 3.0 12 5.7 0.1 2.8 2 1 0 2 2 2 0 Part of AAA domain PQQ_3 PF13570.1 gi|452207499|ref|YP_007487621.1| - 2.8e-65 214.9 57.5 1e-10 41.5 0.2 8.3 8 0 0 8 8 8 8 PQQ-like domain PQQ_2 PF13360.1 gi|452207499|ref|YP_007487621.1| - 1.3e-55 188.4 25.2 3.2e-23 82.4 2.2 4.7 1 1 2 4 4 4 4 PQQ-like domain PQQ PF01011.16 gi|452207499|ref|YP_007487621.1| - 1e-46 154.2 29.5 4.1e-08 32.3 0.3 8.7 9 0 0 9 9 9 8 PQQ enzyme repeat Synuclein PF01387.12 gi|452207499|ref|YP_007487621.1| - 0.016 15.0 2.2 11 5.8 0.0 3.4 3 0 0 3 3 3 0 Synuclein Bacteriocin_IIc PF10439.4 gi|452207499|ref|YP_007487621.1| - 0.5 10.5 6.4 6.4 6.9 0.1 3.1 2 0 0 2 2 2 0 Bacteriocin class II with double-glycine leader peptide Reg_prop PF07494.6 gi|452207499|ref|YP_007487621.1| - 2.1 8.6 4.0 2.4e+02 2.3 0.0 4.8 6 0 0 6 6 6 0 Two component regulator propeller Ribosomal_S6e PF01092.14 gi|452207500|ref|YP_007487622.1| - 3.2e-38 130.2 1.0 3.7e-38 130.0 0.7 1.0 1 0 0 1 1 1 1 Ribosomal protein S6e DFP PF04127.10 gi|452207502|ref|YP_007487624.1| - 3.1e-50 170.3 1.5 3.4e-49 166.9 0.2 2.1 2 0 0 2 2 2 1 DNA / pantothenate metabolism flavoprotein Flavoprotein PF02441.14 gi|452207502|ref|YP_007487624.1| - 2e-27 95.3 0.1 4.6e-27 94.2 0.1 1.6 1 0 0 1 1 1 1 Flavoprotein NAD_binding_10 PF13460.1 gi|452207502|ref|YP_007487624.1| - 0.091 12.7 6.1 0.021 14.8 0.8 2.4 3 1 0 3 3 3 0 NADH(P)-binding Glyco_trans_4_4 PF13579.1 gi|452207502|ref|YP_007487624.1| - 2.9 7.9 10.8 5.2e+02 0.6 7.5 3.2 1 1 0 1 1 1 0 Glycosyl transferase 4-like domain Polyketide_cyc2 PF10604.4 gi|452207503|ref|YP_007487625.1| - 2.8e-12 47.0 1.4 5e-12 46.1 1.0 1.4 1 1 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc PF03364.15 gi|452207503|ref|YP_007487625.1| - 1.8e-06 27.9 0.0 3e-06 27.2 0.0 1.4 1 1 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport AHSA1 PF08327.6 gi|452207503|ref|YP_007487625.1| - 0.0098 15.9 0.1 0.06 13.4 0.1 1.9 1 1 1 2 2 2 2 Activator of Hsp90 ATPase homolog 1-like protein 2_5_RNA_ligase2 PF13563.1 gi|452207504|ref|YP_007487626.1| - 0.0002 21.0 0.1 0.33 10.6 0.0 2.1 1 1 1 2 2 2 2 2'-5' RNA ligase superfamily MoeA_N PF03453.12 gi|452207505|ref|YP_007487627.1| - 2.1e-39 134.4 0.8 3.7e-39 133.6 0.5 1.4 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.19 gi|452207505|ref|YP_007487627.1| - 5.3e-30 103.7 0.3 1.2e-29 102.5 0.1 1.6 2 0 0 2 2 2 1 Probable molybdopterin binding domain MoeA_C PF03454.10 gi|452207505|ref|YP_007487627.1| - 3.8e-20 71.6 3.9 1.1e-19 70.1 0.1 3.2 3 0 0 3 3 3 1 MoeA C-terminal region (domain IV) DUF2591 PF10765.4 gi|452207505|ref|YP_007487627.1| - 0.019 15.1 0.0 0.045 13.9 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2591) MoeA_N PF03453.12 gi|452207506|ref|YP_007487628.1| - 4.7e-45 152.8 2.2 9.3e-45 151.8 1.5 1.5 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) PBP_like PF12727.2 gi|452207506|ref|YP_007487628.1| - 4e-30 104.2 0.8 3.9e-29 100.9 0.0 2.5 2 1 0 2 2 2 1 PBP superfamily domain MoCF_biosynth PF00994.19 gi|452207506|ref|YP_007487628.1| - 2.5e-28 98.3 0.1 4.3e-28 97.5 0.0 1.4 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.10 gi|452207506|ref|YP_007487628.1| - 7.8e-17 60.9 0.1 2.4e-16 59.4 0.0 1.9 1 0 0 1 1 1 1 MoeA C-terminal region (domain IV) PBP_like_2 PF12849.2 gi|452207506|ref|YP_007487628.1| - 0.11 11.9 0.4 1.4 8.2 0.0 2.5 2 1 0 2 2 2 0 PBP superfamily domain T4_gp9_10 PF07880.6 gi|452207506|ref|YP_007487628.1| - 0.11 11.5 0.0 0.16 10.9 0.0 1.2 1 0 0 1 1 1 0 Bacteriophage T4 gp9/10-like protein HSP20 PF00011.16 gi|452207508|ref|YP_007487630.1| - 1.6e-10 40.7 0.0 1.8e-10 40.6 0.0 1.0 1 0 0 1 1 1 1 Hsp20/alpha crystallin family GvpH PF05455.6 gi|452207508|ref|YP_007487630.1| - 0.019 14.6 0.1 0.027 14.1 0.1 1.3 1 0 0 1 1 1 0 GvpH DUF4556 PF15094.1 gi|452207508|ref|YP_007487630.1| - 0.08 12.4 0.0 0.094 12.2 0.0 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4556) PIH1 PF08190.7 gi|452207508|ref|YP_007487630.1| - 0.082 12.3 0.0 0.11 11.9 0.0 1.0 1 0 0 1 1 1 0 pre-RNA processing PIH1/Nop17 ABC1 PF03109.11 gi|452207509|ref|YP_007487631.1| - 2.7e-26 91.8 0.0 7.1e-26 90.5 0.0 1.7 1 0 0 1 1 1 1 ABC1 family APH PF01636.18 gi|452207509|ref|YP_007487631.1| - 9.4e-05 22.2 0.3 0.00051 19.8 0.2 2.3 1 1 0 1 1 1 1 Phosphotransferase enzyme family DUF4229 PF14012.1 gi|452207509|ref|YP_007487631.1| - 0.021 14.7 7.8 0.047 13.5 5.4 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF4229) WaaY PF06176.6 gi|452207509|ref|YP_007487631.1| - 0.045 12.9 0.0 0.076 12.2 0.0 1.3 1 0 0 1 1 1 0 Lipopolysaccharide core biosynthesis protein (WaaY) Pkinase PF00069.20 gi|452207509|ref|YP_007487631.1| - 0.13 11.3 0.0 0.27 10.3 0.0 1.5 1 0 0 1 1 1 0 Protein kinase domain TFIIE_alpha PF02002.12 gi|452207510|ref|YP_007487632.1| - 6.9e-21 73.7 0.0 5.2e-20 70.9 0.0 1.9 2 0 0 2 2 2 1 TFIIE alpha subunit IF2_N PF04760.10 gi|452207510|ref|YP_007487632.1| - 0.0012 18.4 0.7 0.81 9.3 0.0 2.5 2 0 0 2 2 2 2 Translation initiation factor IF-2, N-terminal region Sigma70_r3 PF04539.11 gi|452207510|ref|YP_007487632.1| - 0.0058 16.4 0.0 0.0058 16.4 0.0 2.5 3 0 0 3 3 3 1 Sigma-70 region 3 HypA PF01155.14 gi|452207510|ref|YP_007487632.1| - 0.068 12.8 0.3 0.1 12.2 0.2 1.3 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-C2H2_6 PF13912.1 gi|452207510|ref|YP_007487632.1| - 0.069 13.0 3.1 0.56 10.2 0.1 2.3 2 0 0 2 2 2 0 C2H2-type zinc finger Oxidored_nitro PF00148.14 gi|452207510|ref|YP_007487632.1| - 0.1 11.1 0.0 0.14 10.7 0.0 1.1 1 0 0 1 1 1 0 Nitrogenase component 1 type Oxidoreductase zinc-ribbons_6 PF07191.7 gi|452207510|ref|YP_007487632.1| - 0.1 12.3 0.5 0.32 10.7 0.4 1.7 1 1 0 1 1 1 0 zinc-ribbons GntR PF00392.16 gi|452207510|ref|YP_007487632.1| - 0.12 11.8 0.1 0.91 9.0 0.0 2.2 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family zf-IS66 PF13005.2 gi|452207510|ref|YP_007487632.1| - 0.15 12.0 0.8 0.57 10.1 0.1 2.3 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 Zn-ribbon_8 PF09723.5 gi|452207510|ref|YP_007487632.1| - 0.49 10.3 3.0 1.6 8.7 2.1 1.9 1 1 0 1 1 1 0 Zinc ribbon domain DUF2110 PF09883.4 gi|452207511|ref|YP_007487633.1| - 4.7e-86 288.0 0.0 5.5e-86 287.8 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2110) CheY-binding PF09078.6 gi|452207511|ref|YP_007487633.1| - 0.066 13.2 0.1 0.81 9.7 0.0 2.4 2 0 0 2 2 2 0 CheY binding DUF3592 PF12158.3 gi|452207512|ref|YP_007487634.1| - 0.071 12.9 1.3 2.2 8.0 0.9 2.7 1 1 0 1 1 1 0 Protein of unknown function (DUF3592) MoCF_biosynth PF00994.19 gi|452207513|ref|YP_007487635.1| - 4.8e-35 120.0 0.1 9.1e-35 119.1 0.1 1.4 1 0 0 1 1 1 1 Probable molybdopterin binding domain NAD_kinase PF01513.16 gi|452207515|ref|YP_007487637.1| - 6.2e-46 156.4 0.1 7.6e-46 156.1 0.0 1.1 1 0 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.19 gi|452207515|ref|YP_007487637.1| - 0.00042 19.7 0.9 0.00042 19.7 0.6 3.0 3 1 1 4 4 4 1 Diacylglycerol kinase catalytic domain Glutaredoxin PF00462.19 gi|452207516|ref|YP_007487638.1| - 6.9e-12 45.1 0.0 3.6e-11 42.8 0.0 2.0 2 0 0 2 2 2 1 Glutaredoxin Rhodanese PF00581.15 gi|452207517|ref|YP_007487639.1| - 1.5e-41 141.2 0.0 9.5e-23 80.7 0.0 2.0 2 0 0 2 2 2 2 Rhodanese-like domain Rhodanese PF00581.15 gi|452207518|ref|YP_007487640.1| - 3.9e-37 127.0 0.1 1.8e-19 70.1 0.0 2.1 2 0 0 2 2 2 2 Rhodanese-like domain RicinB_lectin_2 PF14200.1 gi|452207518|ref|YP_007487640.1| - 0.089 13.1 0.0 4.2 7.7 0.0 2.2 2 0 0 2 2 2 0 Ricin-type beta-trefoil lectin domain-like Rubrerythrin PF02915.12 gi|452207519|ref|YP_007487641.1| - 0.0013 19.0 2.2 0.0059 16.9 0.6 2.3 1 1 2 3 3 3 1 Rubrerythrin OrfB_Zn_ribbon PF07282.6 gi|452207521|ref|YP_007487643.1| - 3.6e-21 74.6 0.3 6.8e-21 73.7 0.2 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|452207521|ref|YP_007487643.1| - 0.0059 16.0 0.0 0.0086 15.4 0.0 1.2 1 0 0 1 1 1 1 Probable transposase Lipase_GDSL_2 PF13472.1 gi|452207521|ref|YP_007487643.1| - 0.021 14.9 0.1 0.038 14.1 0.0 1.5 1 0 0 1 1 1 0 GDSL-like Lipase/Acylhydrolase family DUF883 PF05957.8 gi|452207521|ref|YP_007487643.1| - 0.062 13.7 1.4 0.29 11.5 0.6 2.2 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF883) AIRS_C PF02769.17 gi|452207522|ref|YP_007487644.1| - 3.7e-21 75.7 0.0 6.1e-21 75.0 0.0 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|452207522|ref|YP_007487644.1| - 3.3e-17 62.5 2.4 7.8e-17 61.3 1.6 1.7 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain Peptidase_M50 PF02163.17 gi|452207523|ref|YP_007487645.1| - 9.3e-10 37.7 15.5 2.3e-08 33.2 10.8 2.4 1 1 0 1 1 1 1 Peptidase family M50 FtsX PF02687.16 gi|452207523|ref|YP_007487645.1| - 0.01 15.5 0.2 0.01 15.5 0.1 2.8 3 1 0 3 3 3 0 FtsX-like permease family TraB PF01963.12 gi|452207524|ref|YP_007487646.1| - 9e-42 143.3 0.1 2.3e-23 82.9 0.0 2.2 2 0 0 2 2 2 2 TraB family DUF399 PF04187.8 gi|452207524|ref|YP_007487646.1| - 0.12 11.8 0.0 0.27 10.7 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function, DUF399 GerA PF03323.8 gi|452207524|ref|YP_007487646.1| - 1.1 7.3 2.9 3.1 5.8 0.0 2.6 3 0 0 3 3 3 0 Bacillus/Clostridium GerA spore germination protein Usp PF00582.21 gi|452207525|ref|YP_007487647.1| - 3.6e-33 114.7 1.9 4.1e-33 114.5 1.3 1.0 1 0 0 1 1 1 1 Universal stress protein family GCS2 PF04107.8 gi|452207527|ref|YP_007487649.1| - 4.1e-05 22.8 3.8 0.04 13.0 0.2 2.6 3 0 0 3 3 3 2 Glutamate-cysteine ligase family 2(GCS2) PBP PF01161.15 gi|452207529|ref|YP_007487651.1| - 1.1e-13 51.2 0.0 1.3e-13 50.9 0.0 1.1 1 0 0 1 1 1 1 Phosphatidylethanolamine-binding protein MTH865 PF07747.6 gi|452207529|ref|YP_007487651.1| - 0.026 14.1 0.0 0.067 12.8 0.0 1.6 1 0 0 1 1 1 0 MTH865-like family Zn_Tnp_IS1595 PF12760.2 gi|452207531|ref|YP_007487653.1| - 0.19 11.5 1.0 3.5 7.5 0.1 2.3 2 0 0 2 2 2 0 Transposase zinc-ribbon domain DNA_RNApol_7kD PF03604.8 gi|452207531|ref|YP_007487653.1| - 0.29 10.6 1.5 2.6 7.5 0.0 2.4 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit Arch_fla_DE PF04659.8 gi|452207532|ref|YP_007487654.1| - 6.6e-24 83.6 0.0 9.3e-24 83.1 0.0 1.2 1 0 0 1 1 1 1 Archaeal flagella protein Prok-JAB PF14464.1 gi|452207532|ref|YP_007487654.1| - 0.067 12.7 4.5 0.13 11.8 3.1 1.5 1 0 0 1 1 1 0 Prokaryotic homologs of the JAB domain Lactamase_B PF00753.22 gi|452207533|ref|YP_007487655.1| - 1.3e-17 64.0 6.0 2.5e-17 63.1 4.2 1.5 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Rhodanese PF00581.15 gi|452207533|ref|YP_007487655.1| - 4e-12 46.4 0.0 9.7e-12 45.2 0.0 1.7 2 0 0 2 2 2 1 Rhodanese-like domain Lactamase_B_2 PF12706.2 gi|452207533|ref|YP_007487655.1| - 0.016 14.7 0.0 0.029 13.9 0.0 1.4 1 0 0 1 1 1 0 Beta-lactamase superfamily domain E1-E2_ATPase PF00122.15 gi|452207534|ref|YP_007487656.1| - 3.6e-53 179.9 0.1 6.9e-53 179.0 0.0 1.5 1 0 0 1 1 1 1 E1-E2 ATPase Hydrolase PF00702.21 gi|452207534|ref|YP_007487656.1| - 1.3e-49 169.5 9.8 1.3e-49 169.5 6.8 2.3 3 0 0 3 3 3 1 haloacid dehalogenase-like hydrolase HMA PF00403.21 gi|452207534|ref|YP_007487656.1| - 1.2e-29 102.1 0.1 1.7e-13 50.4 0.0 2.8 2 0 0 2 2 2 2 Heavy-metal-associated domain HAD PF12710.2 gi|452207534|ref|YP_007487656.1| - 2.2e-14 54.0 0.1 5.4e-14 52.8 0.0 1.7 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|452207534|ref|YP_007487656.1| - 7.1e-06 25.7 2.1 0.00013 21.6 0.8 2.2 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HTH_AsnC-type PF13404.1 gi|452207535|ref|YP_007487657.1| - 2.9e-16 58.7 2.4 6.8e-16 57.5 1.6 1.7 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.1 gi|452207535|ref|YP_007487657.1| - 4.9e-16 57.8 0.1 7.6e-16 57.2 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|452207535|ref|YP_007487657.1| - 9.5e-07 28.3 0.0 1.5e-06 27.7 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|452207535|ref|YP_007487657.1| - 1.5e-06 27.7 0.5 3.1e-06 26.7 0.3 1.6 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|452207535|ref|YP_007487657.1| - 2.8e-05 23.7 0.0 4.4e-05 23.1 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|452207535|ref|YP_007487657.1| - 7.4e-05 22.9 0.1 0.00024 21.3 0.1 1.9 1 1 1 2 2 2 1 Winged helix DNA-binding domain HTH_20 PF12840.2 gi|452207535|ref|YP_007487657.1| - 0.00025 20.7 0.2 0.00055 19.6 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain YHS PF04945.8 gi|452207535|ref|YP_007487657.1| - 0.00055 19.7 0.2 0.0021 17.8 0.4 1.7 2 0 0 2 2 2 1 YHS domain TrmB PF01978.14 gi|452207535|ref|YP_007487657.1| - 0.0007 19.2 0.0 0.0021 17.7 0.0 1.7 2 0 0 2 2 1 1 Sugar-specific transcriptional regulator TrmB ATPase-cat_bd PF12156.3 gi|452207535|ref|YP_007487657.1| - 0.00096 19.6 2.0 0.0017 18.8 1.4 1.3 1 0 0 1 1 1 1 Putative metal-binding domain of cation transport ATPase HTH_11 PF08279.7 gi|452207535|ref|YP_007487657.1| - 0.0071 15.9 0.0 0.012 15.1 0.0 1.5 1 0 0 1 1 1 1 HTH domain HTH_IclR PF09339.5 gi|452207535|ref|YP_007487657.1| - 0.0074 15.8 0.1 0.015 14.8 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_1 PF00126.22 gi|452207535|ref|YP_007487657.1| - 0.018 14.7 0.0 0.039 13.7 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family LexA_DNA_bind PF01726.11 gi|452207535|ref|YP_007487657.1| - 0.025 14.1 0.0 0.061 12.8 0.0 1.8 1 1 0 1 1 1 0 LexA DNA binding domain HTH_Mga PF08280.6 gi|452207535|ref|YP_007487657.1| - 0.032 13.9 0.0 0.046 13.4 0.0 1.2 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain HTH_28 PF13518.1 gi|452207535|ref|YP_007487657.1| - 0.035 14.1 0.0 0.07 13.1 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Arc_trans_TRASH PF08394.5 gi|452207535|ref|YP_007487657.1| - 0.046 13.8 1.5 0.065 13.3 1.0 1.2 1 0 0 1 1 1 0 Archaeal TRASH domain GHMP_kinases_C PF08544.8 gi|452207535|ref|YP_007487657.1| - 0.047 13.9 0.1 0.1 12.8 0.0 1.5 1 0 0 1 1 1 0 GHMP kinases C terminal HTH_Crp_2 PF13545.1 gi|452207535|ref|YP_007487657.1| - 0.079 12.7 0.0 0.16 11.7 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_34 PF13601.1 gi|452207535|ref|YP_007487657.1| - 0.13 12.3 0.0 0.22 11.6 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain GntR PF00392.16 gi|452207535|ref|YP_007487657.1| - 0.13 11.6 0.4 5.7 6.4 0.0 2.6 1 1 1 2 2 2 0 Bacterial regulatory proteins, gntR family zf-DNA_Pol PF08996.5 gi|452207535|ref|YP_007487657.1| - 0.16 11.2 0.7 0.25 10.6 0.5 1.2 1 0 0 1 1 1 0 DNA Polymerase alpha zinc finger Ta0938 PF11494.3 gi|452207535|ref|YP_007487657.1| - 0.2 11.7 1.4 0.38 10.8 1.0 1.4 1 0 0 1 1 1 0 Ta0938 FeoC PF09012.5 gi|452207535|ref|YP_007487657.1| - 0.26 10.9 1.6 3.2 7.5 0.0 2.5 2 1 1 3 3 3 0 FeoC like transcriptional regulator Zn-ribbon_8 PF09723.5 gi|452207535|ref|YP_007487657.1| - 1.7 8.6 6.9 4.7 7.2 2.6 2.2 2 0 0 2 2 2 0 Zinc ribbon domain DUF309 PF03745.9 gi|452207536|ref|YP_007487658.1| - 8e-15 54.0 0.2 1.2e-14 53.4 0.2 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF309) DUF3006 PF11213.3 gi|452207538|ref|YP_007487660.1| - 3.3e-06 26.7 0.0 4.7e-06 26.2 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF3006) Inositol_P PF00459.20 gi|452207540|ref|YP_007487662.1| - 9.4e-49 166.1 3.1 1.2e-48 165.7 2.1 1.0 1 0 0 1 1 1 1 Inositol monophosphatase family DUF63 PF01889.12 gi|452207541|ref|YP_007487663.1| - 1.7e-35 123.4 10.7 2.3e-34 119.7 7.9 2.4 2 1 0 2 2 2 1 Membrane protein of unknown function DUF63 LMWPc PF01451.16 gi|452207542|ref|YP_007487664.1| - 9.8e-25 87.4 0.0 1.2e-24 87.2 0.0 1.1 1 0 0 1 1 1 1 Low molecular weight phosphotyrosine protein phosphatase PhoU PF01895.14 gi|452207543|ref|YP_007487665.1| - 1.4e-14 54.2 6.1 6.7e-12 45.6 2.4 2.3 2 0 0 2 2 2 2 PhoU domain Antitoxin-MazE PF04014.13 gi|452207543|ref|YP_007487665.1| - 1.7e-05 24.3 0.0 3.8e-05 23.2 0.0 1.6 1 0 0 1 1 1 1 Antidote-toxin recognition MazE ADH_zinc_N PF00107.21 gi|452207543|ref|YP_007487665.1| - 0.049 13.1 0.1 0.15 11.5 0.1 1.8 1 0 0 1 1 1 0 Zinc-binding dehydrogenase PhoU PF01895.14 gi|452207544|ref|YP_007487666.1| - 1e-34 118.8 8.3 1.3e-18 67.2 0.2 2.2 2 0 0 2 2 2 2 PhoU domain Lipoprotein_8 PF02030.10 gi|452207544|ref|YP_007487666.1| - 0.079 11.4 0.2 0.082 11.3 0.2 1.2 1 0 0 1 1 1 0 Hypothetical lipoprotein (MG045 family) NPV_P10 PF05531.7 gi|452207544|ref|YP_007487666.1| - 0.4 10.9 1.8 2 8.7 0.1 2.4 2 0 0 2 2 2 0 Nucleopolyhedrovirus P10 protein ABC_tran PF00005.22 gi|452207545|ref|YP_007487667.1| - 9.5e-31 106.9 0.0 1.3e-30 106.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|452207545|ref|YP_007487667.1| - 7.3e-14 52.4 0.0 4.7e-11 43.1 0.0 2.2 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|452207545|ref|YP_007487667.1| - 6.8e-09 35.2 0.1 1.4e-07 31.0 0.1 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|452207545|ref|YP_007487667.1| - 0.00013 21.3 0.0 0.00036 20.0 0.0 1.7 2 0 0 2 2 1 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|452207545|ref|YP_007487667.1| - 0.00028 21.0 0.0 0.00053 20.1 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|452207545|ref|YP_007487667.1| - 0.00031 19.9 0.1 0.092 11.7 0.1 2.2 2 0 0 2 2 2 2 AAA ATPase domain DUF258 PF03193.11 gi|452207545|ref|YP_007487667.1| - 0.00064 18.9 0.0 0.0011 18.2 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_16 PF13191.1 gi|452207545|ref|YP_007487667.1| - 0.00072 19.5 0.9 0.0036 17.3 0.7 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.1 gi|452207545|ref|YP_007487667.1| - 0.002 18.4 0.0 0.0057 17.0 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|452207545|ref|YP_007487667.1| - 0.014 14.7 0.0 0.065 12.6 0.0 2.1 3 0 0 3 3 3 0 AAA domain AAA_19 PF13245.1 gi|452207545|ref|YP_007487667.1| - 0.016 14.9 0.0 1.3 8.7 0.0 2.5 2 0 0 2 2 2 0 Part of AAA domain AAA_33 PF13671.1 gi|452207545|ref|YP_007487667.1| - 0.019 14.8 0.0 0.031 14.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain DeoRC PF00455.17 gi|452207545|ref|YP_007487667.1| - 0.023 14.3 0.0 0.041 13.5 0.0 1.4 1 0 0 1 1 1 0 DeoR C terminal sensor domain YflT PF11181.3 gi|452207545|ref|YP_007487667.1| - 0.027 14.5 0.2 0.17 12.0 0.1 2.0 2 0 0 2 2 2 0 Heat induced stress protein YflT AAA_17 PF13207.1 gi|452207545|ref|YP_007487667.1| - 0.07 13.9 0.5 0.16 12.7 0.4 2.0 1 1 0 1 1 1 0 AAA domain Rad17 PF03215.10 gi|452207545|ref|YP_007487667.1| - 0.074 11.7 0.0 0.11 11.1 0.0 1.2 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA_10 PF12846.2 gi|452207545|ref|YP_007487667.1| - 0.085 12.2 0.0 0.18 11.1 0.0 1.5 1 0 0 1 1 1 0 AAA-like domain AAA_14 PF13173.1 gi|452207545|ref|YP_007487667.1| - 0.098 12.5 0.0 0.85 9.5 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA PF00004.24 gi|452207545|ref|YP_007487667.1| - 0.11 12.6 0.0 0.55 10.4 0.0 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) SbcCD_C PF13558.1 gi|452207545|ref|YP_007487667.1| - 0.15 11.9 0.3 1.8 8.5 0.2 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit Adeno_IVa2 PF02456.10 gi|452207545|ref|YP_007487667.1| - 0.17 10.4 0.0 2 6.9 0.0 2.0 2 0 0 2 2 2 0 Adenovirus IVa2 protein AAA_13 PF13166.1 gi|452207545|ref|YP_007487667.1| - 0.18 10.2 0.0 0.46 8.8 0.0 1.5 2 0 0 2 2 2 0 AAA domain BPD_transp_1 PF00528.17 gi|452207546|ref|YP_007487668.1| - 3.4e-19 69.0 18.1 3.4e-19 69.0 12.6 4.2 1 1 2 3 3 3 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|452207547|ref|YP_007487669.1| - 2.2e-14 53.3 17.3 2.2e-14 53.3 12.0 2.9 1 1 2 3 3 3 1 Binding-protein-dependent transport system inner membrane component DUF3814 PF12769.2 gi|452207547|ref|YP_007487669.1| - 0.029 14.5 0.5 0.029 14.5 0.4 3.0 4 1 0 4 4 4 0 Domain of unknown function (DUF3814) PBP_like_2 PF12849.2 gi|452207548|ref|YP_007487670.1| - 4.5e-30 105.0 5.6 7.1e-30 104.4 3.9 1.2 1 0 0 1 1 1 1 PBP superfamily domain PBP_like PF12727.2 gi|452207548|ref|YP_007487670.1| - 2.2e-16 59.4 0.0 3.7e-16 58.6 0.0 1.4 1 0 0 1 1 1 1 PBP superfamily domain TAT_signal PF10518.4 gi|452207548|ref|YP_007487670.1| - 0.023 14.7 1.4 0.046 13.7 1.0 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence DUF3220 PF11516.3 gi|452207549|ref|YP_007487671.1| - 0.083 12.8 0.0 0.15 12.0 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3120) Phage_B PF02304.10 gi|452207549|ref|YP_007487671.1| - 0.097 12.9 1.2 0.18 12.0 0.0 2.0 2 1 0 2 2 2 0 Scaffold protein B IncA PF04156.9 gi|452207549|ref|YP_007487671.1| - 0.54 9.8 6.3 1.2 8.6 2.7 2.5 2 1 0 2 2 2 0 IncA protein PhoU_div PF01865.11 gi|452207550|ref|YP_007487672.1| - 3.3e-08 32.9 0.0 8.3e-06 25.1 0.0 2.0 2 0 0 2 2 2 2 Protein of unknown function DUF47 TrkA_N PF02254.13 gi|452207552|ref|YP_007487674.1| - 2.5e-19 69.3 1.7 5.1e-19 68.3 1.2 1.6 1 0 0 1 1 1 1 TrkA-N domain DHH PF01368.15 gi|452207552|ref|YP_007487674.1| - 1.8e-09 37.3 0.1 4e-09 36.2 0.0 1.6 1 0 0 1 1 1 1 DHH family F420_oxidored PF03807.12 gi|452207552|ref|YP_007487674.1| - 1.8e-07 31.4 0.2 7e-07 29.5 0.1 2.1 1 1 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Saccharop_dh PF03435.13 gi|452207552|ref|YP_007487674.1| - 3.7e-06 26.1 0.6 7.6e-06 25.1 0.4 1.4 1 0 0 1 1 1 1 Saccharopine dehydrogenase ApbA PF02558.11 gi|452207552|ref|YP_007487674.1| - 3e-05 23.5 0.0 6.8e-05 22.3 0.0 1.6 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA IlvN PF07991.7 gi|452207552|ref|YP_007487674.1| - 5.2e-05 22.6 0.7 0.00011 21.6 0.1 1.7 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, catalytic domain DHHA1 PF02272.14 gi|452207552|ref|YP_007487674.1| - 5.9e-05 22.6 0.0 0.00019 21.0 0.0 2.0 1 0 0 1 1 1 1 DHHA1 domain NAD_binding_2 PF03446.10 gi|452207552|ref|YP_007487674.1| - 0.00047 20.0 0.1 0.00089 19.1 0.0 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_Gly3P_dh_N PF01210.18 gi|452207552|ref|YP_007487674.1| - 0.0016 18.1 0.0 0.0038 16.9 0.0 1.6 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 2-Hacid_dh_C PF02826.14 gi|452207552|ref|YP_007487674.1| - 0.012 14.7 0.0 0.028 13.5 0.0 1.5 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 3HCDH_N PF02737.13 gi|452207552|ref|YP_007487674.1| - 0.02 14.5 0.1 0.049 13.2 0.1 1.7 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ThiF PF00899.16 gi|452207552|ref|YP_007487674.1| - 0.033 14.0 2.1 0.084 12.6 1.3 1.9 1 1 0 1 1 1 0 ThiF family Pyr_redox_2 PF07992.9 gi|452207552|ref|YP_007487674.1| - 0.056 13.3 0.0 0.12 12.2 0.0 1.5 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase UDPG_MGDP_dh_N PF03721.9 gi|452207552|ref|YP_007487674.1| - 0.067 12.5 0.1 0.22 10.8 0.0 2.0 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_7 PF13241.1 gi|452207552|ref|YP_007487674.1| - 0.13 12.5 0.7 0.45 10.8 0.4 2.0 1 1 0 1 1 1 0 Putative NAD(P)-binding adh_short PF00106.20 gi|452207552|ref|YP_007487674.1| - 1 9.2 8.2 0.75 9.6 2.0 2.8 2 1 1 3 3 3 0 short chain dehydrogenase PRC PF05239.11 gi|452207553|ref|YP_007487675.1| - 2.3e-13 49.7 1.0 2.8e-13 49.5 0.7 1.0 1 0 0 1 1 1 1 PRC-barrel domain DUF3315 PF11776.3 gi|452207553|ref|YP_007487675.1| - 0.025 14.0 0.3 0.043 13.3 0.2 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3315) Thioredoxin PF00085.15 gi|452207554|ref|YP_007487676.1| - 2.5e-27 94.5 0.0 3.5e-27 94.1 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|452207554|ref|YP_007487676.1| - 8.5e-09 35.6 0.1 5.5e-08 33.0 0.1 2.0 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_8 PF13905.1 gi|452207554|ref|YP_007487676.1| - 1.6e-06 28.1 0.0 0.0012 18.8 0.0 2.2 1 1 1 2 2 2 2 Thioredoxin-like Thioredoxin_7 PF13899.1 gi|452207554|ref|YP_007487676.1| - 4.5e-06 26.5 0.3 9.3e-06 25.5 0.0 1.6 2 0 0 2 2 2 1 Thioredoxin-like DUF836 PF05768.9 gi|452207554|ref|YP_007487676.1| - 0.00027 21.1 0.0 0.00051 20.2 0.0 1.5 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) DSBA PF01323.15 gi|452207554|ref|YP_007487676.1| - 0.0013 18.3 0.0 0.0017 17.9 0.0 1.3 1 0 0 1 1 1 1 DSBA-like thioredoxin domain TraF PF13728.1 gi|452207554|ref|YP_007487676.1| - 0.0017 17.8 0.0 0.0028 17.1 0.0 1.3 1 0 0 1 1 1 1 F plasmid transfer operon protein Thioredoxin_3 PF13192.1 gi|452207554|ref|YP_007487676.1| - 0.0024 17.6 0.0 0.0037 17.0 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin domain Thioredoxin_9 PF14595.1 gi|452207554|ref|YP_007487676.1| - 0.0052 16.3 0.1 0.0069 15.9 0.0 1.4 1 1 0 1 1 1 1 Thioredoxin AhpC-TSA PF00578.16 gi|452207554|ref|YP_007487676.1| - 0.0053 16.4 0.1 0.017 14.8 0.1 1.6 1 1 0 1 1 1 1 AhpC/TSA family HyaE PF07449.6 gi|452207554|ref|YP_007487676.1| - 0.053 13.4 0.0 0.26 11.2 0.0 1.9 2 0 0 2 2 2 0 Hydrogenase-1 expression protein HyaE AAA_26 PF13500.1 gi|452207555|ref|YP_007487677.1| - 4.1e-32 111.3 0.0 2.9e-31 108.6 0.0 2.1 2 0 0 2 2 2 1 AAA domain DRTGG PF07085.7 gi|452207555|ref|YP_007487677.1| - 7.2e-26 89.8 0.2 1.8e-25 88.5 0.0 1.8 2 0 0 2 2 2 1 DRTGG domain CbiA PF01656.18 gi|452207555|ref|YP_007487677.1| - 8.4e-05 22.0 0.1 0.00014 21.3 0.0 1.4 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain FMN_dh PF01070.13 gi|452207555|ref|YP_007487677.1| - 0.013 14.3 0.5 2.1 7.1 0.1 2.1 2 0 0 2 2 2 0 FMN-dependent dehydrogenase ATP-grasp_5 PF13549.1 gi|452207556|ref|YP_007487678.1| - 2.3e-71 239.5 0.4 4.4e-71 238.6 0.3 1.5 1 0 0 1 1 1 1 ATP-grasp domain Succ_CoA_lig PF13607.1 gi|452207556|ref|YP_007487678.1| - 6.3e-52 174.8 0.4 2.2e-51 173.0 0.1 2.0 2 0 0 2 2 2 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.1 gi|452207556|ref|YP_007487678.1| - 5.3e-21 74.9 0.1 2e-20 73.1 0.1 2.0 1 0 0 1 1 1 1 CoA binding domain CoA_binding PF02629.14 gi|452207556|ref|YP_007487678.1| - 3.2e-10 40.3 0.5 8.4e-10 39.0 0.4 1.8 1 0 0 1 1 1 1 CoA binding domain ATP-grasp_2 PF08442.5 gi|452207556|ref|YP_007487678.1| - 0.00084 18.7 0.0 0.0045 16.3 0.0 2.0 2 0 0 2 2 2 1 ATP-grasp domain ABC-3 PF00950.12 gi|452207557|ref|YP_007487679.1| - 2.3e-53 181.1 34.9 2.9e-53 180.7 24.2 1.1 1 0 0 1 1 1 1 ABC 3 transport family FecCD PF01032.13 gi|452207557|ref|YP_007487679.1| - 0.0051 15.6 36.6 0.0042 15.9 24.3 1.6 1 1 0 1 1 1 1 FecCD transport family DUF2407_C PF13373.1 gi|452207557|ref|YP_007487679.1| - 0.13 12.1 0.2 0.32 10.9 0.1 1.6 1 0 0 1 1 1 0 DUF2407 C-terminal domain DUF1049 PF06305.6 gi|452207557|ref|YP_007487679.1| - 0.15 11.5 0.1 0.15 11.5 0.1 3.7 4 1 1 5 5 5 0 Protein of unknown function (DUF1049) ABC_tran PF00005.22 gi|452207558|ref|YP_007487680.1| - 1.5e-30 106.2 0.0 2.1e-30 105.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|452207558|ref|YP_007487680.1| - 9.7e-11 42.1 0.0 2.7e-05 24.2 0.0 2.1 1 1 0 2 2 2 2 AAA domain SbcCD_C PF13558.1 gi|452207558|ref|YP_007487680.1| - 0.00035 20.4 0.5 0.015 15.1 0.1 2.9 2 1 0 2 2 2 1 Putative exonuclease SbcCD, C subunit AAA_16 PF13191.1 gi|452207558|ref|YP_007487680.1| - 0.00084 19.3 0.1 0.0017 18.3 0.1 1.4 1 1 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.14 gi|452207558|ref|YP_007487680.1| - 0.00091 18.5 0.0 0.0053 16.0 0.0 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|452207558|ref|YP_007487680.1| - 0.003 17.0 0.1 0.0055 16.2 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|452207558|ref|YP_007487680.1| - 0.0066 16.8 0.1 0.011 16.1 0.0 1.2 1 0 0 1 1 1 1 AAA domain cobW PF02492.14 gi|452207558|ref|YP_007487680.1| - 0.0067 15.8 0.1 0.012 15.0 0.0 1.5 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain AAA_33 PF13671.1 gi|452207558|ref|YP_007487680.1| - 0.023 14.5 0.2 0.073 12.9 0.1 2.0 1 1 0 1 1 1 0 AAA domain AAA_15 PF13175.1 gi|452207558|ref|YP_007487680.1| - 0.029 13.4 0.0 4.8 6.1 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain AAA_25 PF13481.1 gi|452207558|ref|YP_007487680.1| - 0.032 13.6 0.9 0.25 10.7 0.0 2.5 3 0 0 3 3 3 0 AAA domain MobB PF03205.9 gi|452207558|ref|YP_007487680.1| - 0.043 13.5 0.0 0.092 12.4 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_22 PF13401.1 gi|452207558|ref|YP_007487680.1| - 0.068 13.3 0.1 0.46 10.6 0.0 2.0 2 0 0 2 2 2 0 AAA domain NACHT PF05729.7 gi|452207558|ref|YP_007487680.1| - 0.13 11.9 0.0 0.2 11.3 0.0 1.3 1 0 0 1 1 1 0 NACHT domain TroA PF01297.12 gi|452207559|ref|YP_007487681.1| - 2.2e-55 187.6 1.0 2.6e-55 187.4 0.7 1.0 1 0 0 1 1 1 1 Periplasmic solute binding protein family DUF3526 PF12040.3 gi|452207559|ref|YP_007487681.1| - 0.0058 16.7 0.4 0.013 15.6 0.3 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF3526) TAT_signal PF10518.4 gi|452207559|ref|YP_007487681.1| - 0.039 13.9 2.0 0.039 13.9 1.4 2.0 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence SDA1 PF05285.7 gi|452207559|ref|YP_007487681.1| - 0.53 9.5 4.4 0.65 9.2 3.1 1.2 1 0 0 1 1 1 0 SDA1 tRNA_edit PF04073.10 gi|452207560|ref|YP_007487682.1| - 5.4e-31 107.0 0.2 6.4e-31 106.7 0.2 1.1 1 0 0 1 1 1 1 Aminoacyl-tRNA editing domain Lactamase_B PF00753.22 gi|452207561|ref|YP_007487683.1| - 1.1e-20 74.1 8.4 1.5e-20 73.6 5.8 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|452207561|ref|YP_007487683.1| - 0.00044 19.8 0.2 0.00068 19.2 0.1 1.4 1 1 0 1 1 1 1 Beta-lactamase superfamily domain PALP PF00291.20 gi|452207563|ref|YP_007487685.1| - 2.7e-42 145.0 0.3 3.4e-42 144.7 0.2 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme DUF802 PF05650.6 gi|452207563|ref|YP_007487685.1| - 0.088 12.9 1.6 1.8 8.7 0.1 3.1 2 1 0 2 2 2 0 Domain of unknown function (DUF802) adh_short PF00106.20 gi|452207564|ref|YP_007487686.1| - 4.9e-37 127.4 9.6 7.2e-37 126.8 6.7 1.2 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|452207564|ref|YP_007487686.1| - 7.6e-18 65.1 0.3 1e-17 64.7 0.2 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|452207564|ref|YP_007487686.1| - 4.6e-17 62.2 5.2 5.7e-17 61.9 3.6 1.1 1 0 0 1 1 1 1 KR domain NAD_binding_10 PF13460.1 gi|452207564|ref|YP_007487686.1| - 1.3e-05 25.2 4.6 2.5e-05 24.3 3.2 1.5 1 1 0 1 1 1 1 NADH(P)-binding Epimerase PF01370.16 gi|452207564|ref|YP_007487686.1| - 6.5e-05 22.4 0.6 8.7e-05 22.0 0.4 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Eno-Rase_NADH_b PF12242.3 gi|452207564|ref|YP_007487686.1| - 0.0044 16.7 3.2 0.0044 16.7 2.2 2.4 2 0 0 2 2 2 1 NAD(P)H binding domain of trans-2-enoyl-CoA reductase ApbA PF02558.11 gi|452207564|ref|YP_007487686.1| - 0.0088 15.4 0.0 0.016 14.6 0.0 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA THF_DHG_CYH_C PF02882.14 gi|452207564|ref|YP_007487686.1| - 0.016 14.3 0.0 0.027 13.5 0.0 1.4 1 0 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain HEM4 PF02602.10 gi|452207564|ref|YP_007487686.1| - 0.017 14.3 0.2 0.026 13.7 0.2 1.5 1 0 0 1 1 1 0 Uroporphyrinogen-III synthase HemD NmrA PF05368.8 gi|452207564|ref|YP_007487686.1| - 0.083 12.1 0.6 0.13 11.4 0.4 1.3 1 0 0 1 1 1 0 NmrA-like family Zip PF02535.17 gi|452207566|ref|YP_007487688.1| - 1.6e-18 66.8 12.8 3.3e-14 52.6 4.5 2.1 1 1 1 2 2 2 2 ZIP Zinc transporter YhhN PF07947.9 gi|452207566|ref|YP_007487688.1| - 2.2 7.6 9.6 1.3 8.3 3.2 2.6 2 1 0 2 2 2 0 YhhN-like protein Tub_2 PF04525.7 gi|452207567|ref|YP_007487689.1| - 2.1e-05 23.9 0.0 0.12 11.8 0.0 2.9 1 1 1 3 3 3 3 Tubby C 2 GARS_A PF01071.14 gi|452207568|ref|YP_007487690.1| - 6.1e-51 172.7 0.0 9e-51 172.2 0.0 1.3 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain GARS_N PF02844.10 gi|452207568|ref|YP_007487690.1| - 4.8e-24 84.7 0.5 9.4e-24 83.7 0.3 1.5 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, N domain GARS_C PF02843.11 gi|452207568|ref|YP_007487690.1| - 1.1e-19 70.4 0.1 2.6e-19 69.1 0.1 1.7 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, C domain ATP-grasp_4 PF13535.1 gi|452207568|ref|YP_007487690.1| - 4e-19 69.0 0.1 7.6e-19 68.1 0.1 1.4 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_3 PF02655.9 gi|452207568|ref|YP_007487690.1| - 3.3e-06 27.0 0.0 7.5e-06 25.9 0.0 1.6 1 1 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|452207568|ref|YP_007487690.1| - 4.7e-06 25.5 0.0 3.5e-05 22.7 0.0 2.3 1 1 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon TAT_signal PF10518.4 gi|452207569|ref|YP_007487691.1| - 0.0033 17.2 2.6 0.011 15.6 1.8 1.8 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Thioredox_DsbH PF03190.10 gi|452207570|ref|YP_007487692.1| - 5e-71 237.7 0.0 7.7e-71 237.0 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF255 Thioredoxin_7 PF13899.1 gi|452207570|ref|YP_007487692.1| - 3.6e-10 39.7 0.0 8.2e-10 38.5 0.0 1.6 1 0 0 1 1 1 1 Thioredoxin-like GlcNAc_2-epim PF07221.6 gi|452207570|ref|YP_007487692.1| - 1.6e-05 24.0 0.0 0.0012 17.9 0.0 2.5 2 1 0 2 2 2 1 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) Prenyltrans_2 PF13249.1 gi|452207570|ref|YP_007487692.1| - 0.0064 16.8 0.1 21 5.5 0.0 4.1 3 1 0 3 3 3 0 Prenyltransferase-like Thioredoxin_2 PF13098.1 gi|452207570|ref|YP_007487692.1| - 0.021 15.0 0.0 0.038 14.1 0.0 1.4 1 0 0 1 1 1 0 Thioredoxin-like domain C5-epim_C PF06662.8 gi|452207570|ref|YP_007487692.1| - 0.021 14.0 0.0 8.6 5.5 0.0 2.7 3 0 0 3 3 3 0 D-glucuronyl C5-epimerase C-terminus Glyco_hydro_76 PF03663.9 gi|452207570|ref|YP_007487692.1| - 0.038 13.3 0.0 1.3 8.3 0.0 2.4 2 1 0 2 2 2 0 Glycosyl hydrolase family 76 Glyco_hydro_88 PF07470.8 gi|452207570|ref|YP_007487692.1| - 0.1 11.6 0.0 0.29 10.1 0.0 1.8 1 0 0 1 1 1 0 Glycosyl Hydrolase Family 88 ELFV_dehydrog PF00208.16 gi|452207571|ref|YP_007487693.1| - 2.9e-70 236.6 0.2 4.2e-70 236.0 0.1 1.2 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.13 gi|452207571|ref|YP_007487693.1| - 7.3e-50 167.9 0.0 1.1e-49 167.3 0.0 1.3 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.14 gi|452207571|ref|YP_007487693.1| - 0.11 11.6 0.0 0.22 10.6 0.0 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Bactofilin PF04519.8 gi|452207572|ref|YP_007487694.1| - 2.3e-07 30.7 14.0 7.9e-05 22.6 4.2 2.3 1 1 1 2 2 2 2 Polymer-forming cytoskeletal DUF342 PF03961.8 gi|452207572|ref|YP_007487694.1| - 0.0071 14.8 6.2 0.01 14.2 4.3 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF342) zf-C2H2_jaz PF12171.3 gi|452207573|ref|YP_007487695.1| - 5.7e-05 23.1 1.5 0.0002 21.3 0.3 2.1 2 0 0 2 2 2 1 Zinc-finger double-stranded RNA-binding zf-met PF12874.2 gi|452207573|ref|YP_007487695.1| - 0.00016 21.7 0.2 0.00016 21.7 0.1 2.2 3 0 0 3 3 2 1 Zinc-finger of C2H2 type zf-C2H2_6 PF13912.1 gi|452207573|ref|YP_007487695.1| - 0.00039 20.2 4.1 0.021 14.7 0.8 2.5 2 0 0 2 2 2 1 C2H2-type zinc finger zf-C2HC_2 PF13913.1 gi|452207573|ref|YP_007487695.1| - 0.0033 17.0 1.4 1.8 8.3 0.1 2.4 2 0 0 2 2 2 2 zinc-finger of a C2HC-type zf-C2H2 PF00096.21 gi|452207573|ref|YP_007487695.1| - 0.006 16.8 9.6 0.18 12.1 1.1 3.1 3 0 0 3 3 3 1 Zinc finger, C2H2 type Zn-ribbon_8 PF09723.5 gi|452207573|ref|YP_007487695.1| - 0.045 13.7 10.0 0.3 11.0 0.7 2.6 1 1 0 2 2 2 0 Zinc ribbon domain HopW1-1 PF15457.1 gi|452207573|ref|YP_007487695.1| - 0.078 12.0 0.0 0.086 11.8 0.0 1.0 1 0 0 1 1 1 0 Type III T3SS secreted effector HopW1-1/HopPmaA HNH_5 PF14279.1 gi|452207573|ref|YP_007487695.1| - 0.15 12.0 1.0 9.4 6.3 0.1 2.3 1 1 1 2 2 2 0 HNH endonuclease Zn_ribbon_recom PF13408.1 gi|452207573|ref|YP_007487695.1| - 0.17 12.2 3.9 0.17 12.1 0.1 2.0 1 1 1 2 2 2 0 Recombinase zinc beta ribbon domain HNH PF01844.18 gi|452207573|ref|YP_007487695.1| - 0.2 11.5 4.4 2.1 8.2 0.4 2.2 2 0 0 2 2 2 0 HNH endonuclease SprT-like PF10263.4 gi|452207573|ref|YP_007487695.1| - 0.35 10.5 3.7 0.52 9.9 2.5 1.3 1 1 0 1 1 1 0 SprT-like family LIM PF00412.17 gi|452207573|ref|YP_007487695.1| - 0.36 10.9 5.7 3.2 7.8 3.9 2.0 1 1 0 1 1 1 0 LIM domain zf-TRAF PF02176.13 gi|452207573|ref|YP_007487695.1| - 0.36 11.2 5.4 0.13 12.6 1.0 2.1 2 1 1 3 3 3 0 TRAF-type zinc finger zinc_ribbon_4 PF13717.1 gi|452207573|ref|YP_007487695.1| - 0.56 9.9 3.6 17 5.1 0.6 2.6 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|452207573|ref|YP_007487695.1| - 0.58 9.7 3.7 17 5.1 0.6 2.5 2 0 0 2 2 2 0 zinc-ribbon domain Nairovirus_M PF07948.6 gi|452207573|ref|YP_007487695.1| - 0.61 8.1 3.3 0.64 8.0 2.3 1.0 1 0 0 1 1 1 0 Nairovirus M polyprotein-like zf-CHY PF05495.7 gi|452207573|ref|YP_007487695.1| - 0.62 10.2 6.1 0.88 9.7 4.3 1.3 1 0 0 1 1 1 0 CHY zinc finger Prok-RING_1 PF14446.1 gi|452207573|ref|YP_007487695.1| - 0.93 9.2 5.2 12 5.7 0.1 2.5 2 1 0 2 2 2 0 Prokaryotic RING finger family 1 zf-C2H2_4 PF13894.1 gi|452207573|ref|YP_007487695.1| - 0.98 9.9 8.9 2.2 8.8 0.9 2.7 2 1 0 2 2 2 0 C2H2-type zinc finger Yippee-Mis18 PF03226.9 gi|452207573|ref|YP_007487695.1| - 1.1 9.3 4.8 6.9 6.7 3.4 2.1 1 1 0 1 1 1 0 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly C1_3 PF07649.7 gi|452207573|ref|YP_007487695.1| - 1.1 9.3 7.9 15 5.7 0.1 2.9 2 1 0 2 2 2 0 C1-like domain zf-FPG_IleRS PF06827.9 gi|452207573|ref|YP_007487695.1| - 1.1 8.9 7.0 4 7.1 0.1 2.8 3 0 0 3 3 3 0 Zinc finger found in FPG and IleRS Trm112p PF03966.11 gi|452207573|ref|YP_007487695.1| - 1.6 9.1 4.1 11 6.4 2.8 2.1 1 1 0 1 1 1 0 Trm112p-like protein DUF2256 PF10013.4 gi|452207573|ref|YP_007487695.1| - 1.8 8.3 5.2 5.5 6.8 0.1 2.3 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2256) zf-AN1 PF01428.11 gi|452207573|ref|YP_007487695.1| - 1.9 8.3 7.7 2.6 8.0 0.2 2.7 3 0 0 3 3 3 0 AN1-like Zinc finger zf-ribbon_3 PF13248.1 gi|452207573|ref|YP_007487695.1| - 2 7.6 7.7 0.92 8.8 2.0 2.6 2 1 0 2 2 2 0 zinc-ribbon domain ADK_lid PF05191.9 gi|452207573|ref|YP_007487695.1| - 3.2 7.5 7.7 1.2 8.8 1.9 2.6 2 1 0 2 2 2 0 Adenylate kinase, active site lid zf-NADH-PPase PF09297.6 gi|452207573|ref|YP_007487695.1| - 3.5 7.2 7.6 4.6 6.8 0.1 2.7 3 0 0 3 3 2 0 NADH pyrophosphatase zinc ribbon domain OrfB_Zn_ribbon PF07282.6 gi|452207573|ref|YP_007487695.1| - 3.6 7.3 8.4 1.9 8.1 1.8 2.4 1 1 1 2 2 2 0 Putative transposase DNA-binding domain DUF1610 PF07754.6 gi|452207573|ref|YP_007487695.1| - 4.1 7.6 8.4 2.1 8.5 1.0 3.1 2 1 0 2 2 2 0 Domain of unknown function (DUF1610) zf-HIT PF04438.11 gi|452207573|ref|YP_007487695.1| - 4.3 7.0 7.0 23 4.7 1.5 3.0 3 1 0 3 3 3 0 HIT zinc finger zf-H2C2_2 PF13465.1 gi|452207573|ref|YP_007487695.1| - 4.7 7.6 10.1 1.6 9.1 0.5 2.9 3 0 0 3 3 3 0 Zinc-finger double domain Zn_Tnp_IS1595 PF12760.2 gi|452207573|ref|YP_007487695.1| - 6.2 6.7 11.8 7.3 6.4 0.4 2.5 2 1 0 2 2 2 0 Transposase zinc-ribbon domain HypA PF01155.14 gi|452207573|ref|YP_007487695.1| - 7.1 6.3 7.6 16 5.2 3.7 1.9 1 1 1 2 2 2 0 Hydrogenase expression/synthesis hypA family C1_2 PF03107.11 gi|452207573|ref|YP_007487695.1| - 7.8 6.7 9.9 4.2 7.5 0.1 3.1 2 1 0 2 2 2 0 C1 domain C1_4 PF07975.7 gi|452207573|ref|YP_007487695.1| - 9.4 6.3 9.1 8.4 6.4 0.4 2.3 1 1 0 2 2 2 0 TFIIH C1-like domain tRNA-synt_1b PF00579.20 gi|452207574|ref|YP_007487696.1| - 8.3e-55 185.9 0.0 1e-54 185.6 0.0 1.0 1 0 0 1 1 1 1 tRNA synthetases class I (W and Y) HATPase_c PF02518.21 gi|452207575|ref|YP_007487697.1| - 3.4e-14 52.4 0.0 6.5e-14 51.6 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.5 gi|452207575|ref|YP_007487697.1| - 5.5e-09 36.0 4.1 6.4e-09 35.8 0.4 2.6 3 0 0 3 3 3 1 PAS fold PAS PF00989.19 gi|452207575|ref|YP_007487697.1| - 1.4e-08 34.4 0.1 4.3e-08 32.9 0.0 1.8 2 1 0 2 2 2 1 PAS fold HATPase_c_2 PF13581.1 gi|452207575|ref|YP_007487697.1| - 4.5e-07 29.7 0.0 9.6e-07 28.6 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_9 PF13426.1 gi|452207575|ref|YP_007487697.1| - 7.4e-07 29.4 0.0 1.8e-06 28.2 0.0 1.6 1 0 0 1 1 1 1 PAS domain PAS_8 PF13188.1 gi|452207575|ref|YP_007487697.1| - 1.7e-06 27.6 0.0 4.3e-06 26.3 0.0 1.7 1 0 0 1 1 1 1 PAS domain HisKA PF00512.20 gi|452207575|ref|YP_007487697.1| - 0.073 13.0 0.8 0.16 11.9 0.6 1.6 1 0 0 1 1 1 0 His Kinase A (phospho-acceptor) domain adh_short PF00106.20 gi|452207577|ref|YP_007487699.1| - 1.6e-21 76.9 3.3 2.1e-21 76.5 2.3 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|452207577|ref|YP_007487699.1| - 3.7e-10 39.9 0.0 4.6e-10 39.6 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|452207577|ref|YP_007487699.1| - 5.3e-07 29.4 2.9 1.1e-06 28.4 2.0 1.5 1 1 0 1 1 1 1 KR domain Eno-Rase_NADH_b PF12242.3 gi|452207577|ref|YP_007487699.1| - 0.0016 18.1 0.3 0.0039 16.9 0.2 1.6 1 0 0 1 1 1 1 NAD(P)H binding domain of trans-2-enoyl-CoA reductase Epimerase PF01370.16 gi|452207577|ref|YP_007487699.1| - 0.03 13.7 0.1 0.055 12.8 0.0 1.4 2 0 0 2 2 2 0 NAD dependent epimerase/dehydratase family HHH_5 PF14520.1 gi|452207577|ref|YP_007487699.1| - 0.053 13.7 0.5 0.17 12.0 0.4 1.9 1 1 0 1 1 1 0 Helix-hairpin-helix domain SBP_bac_11 PF13531.1 gi|452207577|ref|YP_007487699.1| - 0.36 10.4 2.6 0.32 10.5 0.7 1.6 1 1 1 2 2 2 0 Bacterial extracellular solute-binding protein Mob_synth_C PF06463.8 gi|452207578|ref|YP_007487700.1| - 7.7e-29 99.9 0.0 1.5e-28 99.0 0.0 1.5 1 0 0 1 1 1 1 Molybdenum Cofactor Synthesis C Radical_SAM PF04055.16 gi|452207578|ref|YP_007487700.1| - 3.8e-23 82.4 0.0 9.3e-23 81.2 0.0 1.7 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|452207578|ref|YP_007487700.1| - 5.8e-07 29.5 0.0 1.2e-06 28.4 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|452207578|ref|YP_007487700.1| - 1.6e-06 28.3 0.0 4.6e-06 26.7 0.0 1.7 2 0 0 2 2 2 1 4Fe-4S single cluster domain Cytochrome_C7 PF14522.1 gi|452207578|ref|YP_007487700.1| - 0.069 12.7 0.4 11 5.7 0.0 2.3 2 0 0 2 2 2 0 Cytochrome c7 MarR_2 PF12802.2 gi|452207579|ref|YP_007487701.1| - 8.9e-05 22.0 0.0 0.00013 21.5 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_45 PF14947.1 gi|452207579|ref|YP_007487701.1| - 0.001 18.8 0.0 0.0013 18.4 0.0 1.1 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_20 PF12840.2 gi|452207579|ref|YP_007487701.1| - 0.0081 15.9 0.0 0.013 15.2 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.17 gi|452207579|ref|YP_007487701.1| - 0.013 15.1 0.0 0.019 14.6 0.0 1.2 1 0 0 1 1 1 0 MarR family HTH_27 PF13463.1 gi|452207579|ref|YP_007487701.1| - 0.023 15.0 0.0 0.033 14.5 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF2250 PF10007.4 gi|452207579|ref|YP_007487701.1| - 0.052 13.4 0.0 0.13 12.2 0.0 1.5 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) THUMP PF02926.12 gi|452207581|ref|YP_007487703.1| - 3.9e-08 33.2 0.0 9.3e-08 32.0 0.0 1.6 1 0 0 1 1 1 1 THUMP domain PGM_PMM_I PF02878.11 gi|452207582|ref|YP_007487704.1| - 8.6e-30 103.0 0.0 1.7e-29 102.0 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.11 gi|452207582|ref|YP_007487704.1| - 3.2e-21 75.5 0.2 7.4e-21 74.4 0.1 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.15 gi|452207582|ref|YP_007487704.1| - 3.1e-10 39.8 0.0 9.5e-10 38.3 0.0 1.8 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain PGM_PMM_III PF02880.11 gi|452207582|ref|YP_007487704.1| - 0.0018 18.2 0.0 0.0039 17.2 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DUF3060 PF11259.3 gi|452207583|ref|YP_007487705.1| - 0.00077 19.0 5.9 0.02 14.4 2.4 2.5 1 1 1 2 2 2 2 Protein of unknown function (DUF3060) zf-ribbon_3 PF13248.1 gi|452207583|ref|YP_007487705.1| - 0.026 13.7 0.7 0.12 11.6 0.0 2.1 2 0 0 2 2 2 0 zinc-ribbon domain DZR PF12773.2 gi|452207583|ref|YP_007487705.1| - 0.048 13.4 0.1 0.088 12.6 0.1 1.4 1 0 0 1 1 1 0 Double zinc ribbon Pentapeptide_3 PF13576.1 gi|452207584|ref|YP_007487706.1| - 5.7e-40 134.9 98.7 1.5e-08 34.4 3.5 9.2 6 3 3 9 9 9 8 Pentapeptide repeats (9 copies) Ion_trans_2 PF07885.11 gi|452207584|ref|YP_007487706.1| - 2.2e-07 30.5 3.7 2.2e-07 30.5 2.5 2.1 2 0 0 2 2 2 1 Ion channel Pentapeptide_4 PF13599.1 gi|452207584|ref|YP_007487706.1| - 6.4e-05 22.6 49.4 0.15 11.8 4.4 6.8 3 2 2 6 6 6 5 Pentapeptide repeats (9 copies) DUF1962 PF09227.5 gi|452207584|ref|YP_007487706.1| - 0.062 13.3 0.1 1.9 8.6 0.0 3.0 2 0 0 2 2 2 0 Domain of unknown function (DUF1962) DUF2617 PF10936.3 gi|452207585|ref|YP_007487707.1| - 0.0011 18.5 0.0 0.14 11.7 0.0 2.2 2 0 0 2 2 2 2 Protein of unknown function DUF2617 Spermine_synth PF01564.12 gi|452207586|ref|YP_007487708.1| - 2.1e-14 53.0 0.0 3.1e-14 52.5 0.0 1.1 1 0 0 1 1 1 1 Spermine/spermidine synthase Methyltransf_30 PF05430.6 gi|452207586|ref|YP_007487708.1| - 0.0018 17.9 0.1 0.005 16.4 0.0 1.7 2 0 0 2 2 2 1 S-adenosyl-L-methionine-dependent methyltransferase MCPsignal PF00015.16 gi|452207588|ref|YP_007487710.1| - 5.4e-44 150.2 37.8 5.4e-44 150.2 26.2 3.8 2 1 2 4 4 4 2 Methyl-accepting chemotaxis protein (MCP) signalling domain Protoglobin PF11563.3 gi|452207588|ref|YP_007487710.1| - 5e-33 113.9 3.5 5e-33 113.9 2.4 2.3 3 0 0 3 3 3 1 Protoglobin Syntaxin-6_N PF09177.6 gi|452207588|ref|YP_007487710.1| - 0.014 15.7 4.4 0.014 15.7 3.0 5.7 3 1 3 6 6 5 0 Syntaxin 6, N-terminal Laminin_II PF06009.7 gi|452207588|ref|YP_007487710.1| - 0.021 14.5 36.3 0.24 11.1 2.5 5.0 2 2 2 4 4 4 0 Laminin Domain II DUF948 PF06103.6 gi|452207588|ref|YP_007487710.1| - 0.032 14.0 34.1 0.046 13.5 1.9 6.0 2 2 4 6 6 6 0 Bacterial protein of unknown function (DUF948) Cauli_AT PF03233.8 gi|452207588|ref|YP_007487710.1| - 0.13 11.9 18.1 2.2 7.9 0.1 4.7 1 1 3 5 5 5 0 Aphid transmission protein Seryl_tRNA_N PF02403.17 gi|452207588|ref|YP_007487710.1| - 0.22 11.5 30.6 0.8 9.7 6.3 5.0 1 1 3 4 4 4 0 Seryl-tRNA synthetase N-terminal domain DASH_Duo1 PF08651.5 gi|452207588|ref|YP_007487710.1| - 0.27 10.8 23.8 0.089 12.3 0.5 6.0 3 2 4 7 7 7 0 DASH complex subunit Duo1 Reo_sigmaC PF04582.7 gi|452207588|ref|YP_007487710.1| - 0.39 9.8 30.7 0.5 9.4 5.8 3.0 1 1 2 3 3 3 0 Reovirus sigma C capsid protein DUF2580 PF10824.3 gi|452207588|ref|YP_007487710.1| - 0.51 10.7 28.5 0.056 13.8 0.9 4.6 2 2 2 4 4 4 0 Protein of unknown function (DUF2580) DUF1664 PF07889.7 gi|452207588|ref|YP_007487710.1| - 0.53 10.0 32.3 0.2 11.4 2.4 5.4 3 2 3 6 6 6 0 Protein of unknown function (DUF1664) TPR_MLP1_2 PF07926.7 gi|452207588|ref|YP_007487710.1| - 0.64 9.7 40.4 0.031 14.0 8.0 4.2 3 2 1 4 4 4 0 TPR/MLP1/MLP2-like protein IncA PF04156.9 gi|452207588|ref|YP_007487710.1| - 0.89 9.1 32.1 0.33 10.5 6.5 3.3 3 0 0 3 3 3 0 IncA protein DUF3407 PF11887.3 gi|452207588|ref|YP_007487710.1| - 0.96 8.6 24.5 0.04 13.2 2.0 4.0 3 1 1 4 4 4 0 Protein of unknown function (DUF3407) Spectrin PF00435.16 gi|452207588|ref|YP_007487710.1| - 1 9.6 30.9 0.046 14.0 3.7 5.0 2 1 3 5 5 5 0 Spectrin repeat ATP-synt_ab PF00006.20 gi|452207588|ref|YP_007487710.1| - 1.1 8.6 7.8 0.34 10.3 1.6 2.7 2 1 1 3 3 3 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_27 PF13514.1 gi|452207588|ref|YP_007487710.1| - 1.2 6.7 50.5 0.0047 14.7 9.2 2.9 2 1 1 3 3 3 0 AAA domain Spc7 PF08317.6 gi|452207588|ref|YP_007487710.1| - 1.3 7.5 29.8 0.22 10.1 5.8 2.9 2 1 0 3 3 3 0 Spc7 kinetochore protein NPV_P10 PF05531.7 gi|452207588|ref|YP_007487710.1| - 1.7 8.9 39.1 1.9 8.8 0.8 6.9 4 2 1 5 5 5 0 Nucleopolyhedrovirus P10 protein RPW8 PF05659.6 gi|452207588|ref|YP_007487710.1| - 1.7 8.1 8.2 3.2 7.2 0.1 3.9 1 1 1 3 3 3 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 FH2 PF02181.18 gi|452207588|ref|YP_007487710.1| - 1.8 7.3 25.7 0.37 9.6 3.5 3.9 3 1 1 4 4 4 0 Formin Homology 2 Domain TMP_2 PF06791.8 gi|452207588|ref|YP_007487710.1| - 3.4 7.2 32.8 0.15 11.6 5.4 3.6 1 1 2 3 3 3 0 Prophage tail length tape measure protein ISG65-75 PF11727.3 gi|452207588|ref|YP_007487710.1| - 4.4 6.2 38.8 0.099 11.6 5.1 4.3 2 1 3 5 5 5 0 Invariant surface glycoprotein Fib_alpha PF08702.5 gi|452207588|ref|YP_007487710.1| - 7.4 6.6 30.0 0.16 12.0 1.6 5.0 2 1 4 6 6 6 0 Fibrinogen alpha/beta chain family PAS_9 PF13426.1 gi|452207589|ref|YP_007487711.1| - 3.6e-54 181.5 1.5 1.4e-24 86.4 0.1 3.6 3 0 0 3 3 3 3 PAS domain PAS PF00989.19 gi|452207589|ref|YP_007487711.1| - 1.6e-34 118.0 0.2 5.3e-15 55.1 0.0 3.4 3 0 0 3 3 3 3 PAS fold PAS_4 PF08448.5 gi|452207589|ref|YP_007487711.1| - 2.3e-21 75.9 1.6 6.5e-11 42.2 0.1 3.5 3 0 0 3 3 3 2 PAS fold PAS_3 PF08447.6 gi|452207589|ref|YP_007487711.1| - 3.4e-21 75.1 0.2 1.3e-08 34.8 0.0 3.4 3 0 0 3 3 3 3 PAS fold PAS_8 PF13188.1 gi|452207589|ref|YP_007487711.1| - 2.2e-15 55.8 0.1 8.9e-05 22.2 0.0 3.6 3 0 0 3 3 3 3 PAS domain HATPase_c PF02518.21 gi|452207589|ref|YP_007487711.1| - 4.1e-13 49.0 0.0 2.7e-12 46.3 0.0 2.3 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.1 gi|452207589|ref|YP_007487711.1| - 9.4e-09 35.1 0.3 6e-08 32.5 0.0 2.2 1 1 1 2 2 2 1 Histidine kinase-like ATPase domain HisKA PF00512.20 gi|452207589|ref|YP_007487711.1| - 0.00013 21.8 0.6 0.00045 20.1 0.1 2.2 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain Adaptin_N PF01602.15 gi|452207589|ref|YP_007487711.1| - 0.0074 14.6 0.2 0.01 14.2 0.2 1.1 1 0 0 1 1 1 1 Adaptin N terminal region DUF1098 PF06497.6 gi|452207589|ref|YP_007487711.1| - 0.025 14.6 0.0 0.062 13.3 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1098) PAS_4 PF08448.5 gi|452207590|ref|YP_007487712.1| - 6.3e-25 87.3 8.1 2.1e-14 53.5 0.2 4.1 4 0 0 4 4 4 3 PAS fold PAS_9 PF13426.1 gi|452207590|ref|YP_007487712.1| - 1.5e-24 86.3 0.1 7.1e-10 39.2 0.0 3.7 3 0 0 3 3 3 3 PAS domain HATPase_c PF02518.21 gi|452207590|ref|YP_007487712.1| - 2.7e-19 68.9 0.1 5.6e-19 67.9 0.1 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.19 gi|452207590|ref|YP_007487712.1| - 5.9e-13 48.5 0.2 0.00093 18.9 0.0 3.7 3 0 0 3 3 3 3 PAS fold PAS_3 PF08447.6 gi|452207590|ref|YP_007487712.1| - 1.6e-11 44.1 0.1 9.3e-05 22.4 0.0 3.7 3 0 0 3 3 3 3 PAS fold GAF_2 PF13185.1 gi|452207590|ref|YP_007487712.1| - 3.3e-11 43.8 0.7 1e-08 35.8 0.1 2.8 2 0 0 2 2 2 1 GAF domain HisKA PF00512.20 gi|452207590|ref|YP_007487712.1| - 3.1e-10 39.8 4.5 3.3e-10 39.8 0.7 2.8 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_8 PF13188.1 gi|452207590|ref|YP_007487712.1| - 1.3e-08 34.3 0.0 0.0023 17.7 0.0 3.6 3 0 0 3 3 3 2 PAS domain GAF_3 PF13492.1 gi|452207590|ref|YP_007487712.1| - 3.7e-08 33.5 0.0 8.7e-08 32.3 0.0 1.7 1 0 0 1 1 1 1 GAF domain PAS_10 PF13596.1 gi|452207590|ref|YP_007487712.1| - 0.052 13.8 0.0 0.25 11.6 0.0 2.2 2 0 0 2 2 2 0 PAS domain UPF0058 PF01893.11 gi|452207591|ref|YP_007487713.1| - 8.6e-20 70.5 0.7 9.8e-20 70.4 0.5 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0058 DUF555 PF04475.7 gi|452207592|ref|YP_007487714.1| - 2.3e-39 133.4 0.3 3.2e-39 133.0 0.2 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF555) OGG_N PF07934.7 gi|452207593|ref|YP_007487715.1| - 6.1e-18 64.9 0.0 9.3e-18 64.3 0.0 1.3 1 0 0 1 1 1 1 8-oxoguanine DNA glycosylase, N-terminal domain HhH-GPD PF00730.20 gi|452207593|ref|YP_007487715.1| - 2.5e-13 50.2 0.0 3.6e-13 49.7 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein UPF0259 PF06790.6 gi|452207594|ref|YP_007487716.1| - 0.016 14.6 0.4 0.024 14.0 0.2 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0259) Flagellin_C PF00700.16 gi|452207595|ref|YP_007487717.1| - 0.014 15.5 2.3 0.049 13.7 0.1 2.7 2 1 1 3 3 3 0 Bacterial flagellin C-terminal helical region Trypan_PARP PF05887.6 gi|452207595|ref|YP_007487717.1| - 0.015 15.1 9.3 0.042 13.6 6.5 1.7 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) FliD_N PF02465.13 gi|452207595|ref|YP_007487717.1| - 0.048 14.0 2.7 0.19 12.0 0.3 2.9 2 1 1 3 3 3 0 Flagellar hook-associated protein 2 N-terminus LXG PF04740.7 gi|452207595|ref|YP_007487717.1| - 0.049 13.4 5.3 0.029 14.1 1.9 1.9 1 1 1 2 2 2 0 LXG domain of WXG superfamily DUF848 PF05852.6 gi|452207595|ref|YP_007487717.1| - 0.71 9.7 8.8 0.21 11.4 0.5 2.7 1 1 2 3 3 3 0 Gammaherpesvirus protein of unknown function (DUF848) DUF4398 PF14346.1 gi|452207595|ref|YP_007487717.1| - 0.9 9.6 15.6 1.1 9.3 1.9 3.7 2 1 1 3 3 3 0 Domain of unknown function (DUF4398) Spectrin PF00435.16 gi|452207595|ref|YP_007487717.1| - 1.6 9.0 7.1 15 5.9 0.9 3.2 1 1 2 3 3 3 0 Spectrin repeat Sipho_Gp157 PF05565.6 gi|452207595|ref|YP_007487717.1| - 5.7 6.4 7.5 1.2 8.7 1.9 2.0 1 1 1 2 2 2 0 Siphovirus Gp157 Acylphosphatase PF00708.13 gi|452207596|ref|YP_007487718.1| - 6.3e-28 96.7 0.1 6.8e-28 96.6 0.0 1.0 1 0 0 1 1 1 1 Acylphosphatase Carb_kinase PF01256.12 gi|452207597|ref|YP_007487719.1| - 1.5e-46 158.6 5.0 3e-46 157.6 3.5 1.5 1 0 0 1 1 1 1 Carbohydrate kinase YjeF_N PF03853.10 gi|452207597|ref|YP_007487719.1| - 1.2e-42 145.3 2.9 1.5e-42 145.0 0.3 2.1 2 0 0 2 2 2 1 YjeF-related protein N-terminus HK PF02110.10 gi|452207597|ref|YP_007487719.1| - 1.1e-05 24.6 0.7 2e-05 23.9 0.5 1.3 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family MoaC PF01967.16 gi|452207598|ref|YP_007487720.1| - 7.2e-43 145.5 0.2 8.3e-43 145.3 0.1 1.0 1 0 0 1 1 1 1 MoaC family MMR_HSR1 PF01926.18 gi|452207599|ref|YP_007487721.1| - 1.5e-19 70.0 0.0 4.4e-19 68.5 0.0 1.8 2 0 0 2 2 2 1 50S ribosome-binding GTPase GTP_EFTU PF00009.22 gi|452207599|ref|YP_007487721.1| - 2.5e-10 40.0 0.0 5.6e-10 38.9 0.0 1.5 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP-bdg_N PF13167.1 gi|452207599|ref|YP_007487721.1| - 3.7e-10 39.7 0.0 8.2e-10 38.6 0.0 1.6 1 0 0 1 1 1 1 GTP-binding GTPase N-terminal cobW PF02492.14 gi|452207599|ref|YP_007487721.1| - 5.7e-06 25.8 0.2 0.00079 18.9 0.0 2.4 1 1 1 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain FeoB_N PF02421.13 gi|452207599|ref|YP_007487721.1| - 0.00016 20.9 0.0 0.1 11.8 0.0 2.6 2 0 0 2 2 2 2 Ferrous iron transport protein B Miro PF08477.8 gi|452207599|ref|YP_007487721.1| - 0.0013 19.2 0.0 0.0071 16.8 0.0 2.2 2 1 0 2 2 2 1 Miro-like protein Arf PF00025.16 gi|452207599|ref|YP_007487721.1| - 0.002 17.4 0.1 0.77 8.9 0.1 2.3 2 0 0 2 2 2 2 ADP-ribosylation factor family AAA_17 PF13207.1 gi|452207599|ref|YP_007487721.1| - 0.0024 18.7 6.5 0.0025 18.6 0.5 3.2 2 2 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|452207599|ref|YP_007487721.1| - 0.0035 17.6 0.0 0.017 15.4 0.0 2.3 2 1 0 2 2 1 1 AAA domain AAA_22 PF13401.1 gi|452207599|ref|YP_007487721.1| - 0.02 15.0 0.0 0.053 13.6 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|452207599|ref|YP_007487721.1| - 0.023 14.7 0.5 0.14 12.1 0.3 2.4 1 1 0 1 1 1 0 AAA ATPase domain MobB PF03205.9 gi|452207599|ref|YP_007487721.1| - 0.038 13.6 0.0 0.11 12.2 0.0 1.8 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B DUF1949 PF09186.6 gi|452207599|ref|YP_007487721.1| - 0.039 13.5 0.2 0.55 9.8 0.0 2.9 3 0 0 3 3 3 0 Domain of unknown function (DUF1949) DUF258 PF03193.11 gi|452207599|ref|YP_007487721.1| - 0.044 12.9 0.0 0.18 11.0 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function, DUF258 ATP_bind_1 PF03029.12 gi|452207599|ref|YP_007487721.1| - 0.065 12.7 0.1 0.25 10.8 0.0 1.9 1 1 1 2 2 2 0 Conserved hypothetical ATP binding protein Dynamin_N PF00350.18 gi|452207599|ref|YP_007487721.1| - 0.067 13.0 0.0 11 5.8 0.0 2.4 2 0 0 2 2 2 0 Dynamin family ABC_tran PF00005.22 gi|452207599|ref|YP_007487721.1| - 0.082 13.2 0.0 0.19 12.0 0.0 1.8 1 1 0 1 1 1 0 ABC transporter AAA_14 PF13173.1 gi|452207599|ref|YP_007487721.1| - 0.086 12.7 0.0 0.15 11.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain CBS PF00571.23 gi|452207600|ref|YP_007487722.1| - 3.9e-22 77.7 3.1 1.2e-12 47.4 0.1 2.8 2 1 0 2 2 2 2 CBS domain HTH_31 PF13560.1 gi|452207600|ref|YP_007487722.1| - 4.1e-11 42.8 0.7 9.2e-11 41.7 0.5 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.17 gi|452207600|ref|YP_007487722.1| - 2.2e-09 37.0 0.0 4.2e-09 36.1 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.2 gi|452207600|ref|YP_007487722.1| - 1.5e-08 34.5 0.0 2.4e-08 33.9 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_37 PF13744.1 gi|452207600|ref|YP_007487722.1| - 0.00051 19.8 0.0 0.00096 18.9 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.1 gi|452207600|ref|YP_007487722.1| - 0.0082 15.7 0.2 0.017 14.7 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.1 gi|452207600|ref|YP_007487722.1| - 0.018 15.2 0.0 0.032 14.4 0.0 1.4 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain PUA PF01472.15 gi|452207600|ref|YP_007487722.1| - 0.051 13.3 0.3 0.051 13.3 0.2 1.8 2 0 0 2 2 2 0 PUA domain HTH_24 PF13412.1 gi|452207600|ref|YP_007487722.1| - 0.09 12.1 0.1 0.68 9.3 0.0 2.4 3 0 0 3 3 3 0 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|452207600|ref|YP_007487722.1| - 0.11 12.2 0.2 0.44 10.2 0.1 2.1 3 0 0 3 3 3 0 MarR family DUF555 PF04475.7 gi|452207601|ref|YP_007487723.1| - 1.8e-48 162.6 0.0 2.1e-48 162.5 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF555) zinc_ribbon_2 PF13240.1 gi|452207601|ref|YP_007487723.1| - 0.045 13.2 0.2 0.066 12.7 0.2 1.2 1 0 0 1 1 1 0 zinc-ribbon domain Proteasome PF00227.21 gi|452207602|ref|YP_007487724.1| - 7.4e-44 149.3 0.5 8.6e-44 149.0 0.3 1.0 1 0 0 1 1 1 1 Proteasome subunit DNA_ligase_A_M PF01068.16 gi|452207603|ref|YP_007487725.1| - 8.9e-46 155.8 0.0 1.2e-45 155.3 0.0 1.2 1 0 0 1 1 1 1 ATP dependent DNA ligase domain DNA_ligase_A_N PF04675.9 gi|452207603|ref|YP_007487725.1| - 4.1e-33 114.6 0.0 9.5e-32 110.2 0.0 2.2 1 1 1 2 2 2 2 DNA ligase N terminus DNA_ligase_A_C PF04679.10 gi|452207603|ref|YP_007487725.1| - 2e-18 66.5 0.0 4.6e-18 65.4 0.0 1.7 1 0 0 1 1 1 1 ATP dependent DNA ligase C terminal region Lactamase_B_3 PF13483.1 gi|452207604|ref|YP_007487726.1| - 1e-30 106.6 0.0 1.2e-30 106.3 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Rieske PF00355.21 gi|452207604|ref|YP_007487726.1| - 0.099 12.2 0.0 0.33 10.5 0.0 1.9 2 0 0 2 2 2 0 Rieske [2Fe-2S] domain GWT1 PF06423.7 gi|452207606|ref|YP_007487728.1| - 0.0044 17.1 0.8 0.0061 16.6 0.6 1.2 1 0 0 1 1 1 1 GWT1 Cg6151-P PF10233.4 gi|452207606|ref|YP_007487728.1| - 6.1 6.8 13.4 0.75 9.7 4.6 2.3 1 1 0 2 2 2 0 Uncharacterized conserved protein CG6151-P HSCB_C PF07743.8 gi|452207607|ref|YP_007487729.1| - 0.92 10.0 3.6 11 6.6 0.1 2.9 3 0 0 3 3 3 0 HSCB C-terminal oligomerisation domain AAA_11 PF13086.1 gi|452207608|ref|YP_007487730.1| - 1.8e-39 135.7 0.0 4.6e-21 75.4 0.1 3.1 2 1 1 3 3 3 2 AAA domain AAA_12 PF13087.1 gi|452207608|ref|YP_007487730.1| - 4e-39 134.0 0.0 6e-39 133.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain Dna2 PF08696.6 gi|452207608|ref|YP_007487730.1| - 6.3e-33 113.8 0.0 6.5e-32 110.5 0.0 2.1 1 1 0 1 1 1 1 DNA replication factor Dna2 AAA_30 PF13604.1 gi|452207608|ref|YP_007487730.1| - 9.2e-18 64.5 2.8 2.1e-17 63.3 0.2 2.8 4 0 0 4 4 3 1 AAA domain AAA_19 PF13245.1 gi|452207608|ref|YP_007487730.1| - 1.4e-17 63.2 0.1 3.1e-14 52.4 0.0 3.1 2 0 0 2 2 2 2 Part of AAA domain PDDEXK_1 PF12705.2 gi|452207608|ref|YP_007487730.1| - 1.9e-13 50.4 0.1 9.3e-13 48.1 0.0 2.0 2 0 0 2 2 2 1 PD-(D/E)XK nuclease superfamily Viral_helicase1 PF01443.13 gi|452207608|ref|YP_007487730.1| - 5.2e-08 32.7 0.0 0.068 12.6 0.0 3.2 3 0 0 3 3 3 2 Viral (Superfamily 1) RNA helicase UvrD-helicase PF00580.16 gi|452207608|ref|YP_007487730.1| - 7e-06 25.5 0.0 1.1e-05 24.8 0.0 1.3 1 0 0 1 1 1 1 UvrD/REP helicase N-terminal domain DUF2075 PF09848.4 gi|452207608|ref|YP_007487730.1| - 9.8e-05 21.4 0.0 0.00017 20.6 0.0 1.4 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) UvrD_C_2 PF13538.1 gi|452207608|ref|YP_007487730.1| - 0.00017 21.6 0.0 0.00048 20.2 0.0 1.8 1 0 0 1 1 1 1 UvrD-like helicase C-terminal domain AAA_22 PF13401.1 gi|452207608|ref|YP_007487730.1| - 0.00024 21.2 0.0 0.002 18.2 0.0 2.4 2 1 0 2 2 1 1 AAA domain ResIII PF04851.10 gi|452207608|ref|YP_007487730.1| - 0.00059 19.7 0.0 0.0014 18.4 0.0 1.6 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_RecD PF05127.9 gi|452207608|ref|YP_007487730.1| - 0.0007 19.2 0.0 0.0014 18.2 0.0 1.5 1 0 0 1 1 1 1 Helicase AAA_16 PF13191.1 gi|452207608|ref|YP_007487730.1| - 0.0015 18.5 0.7 0.0054 16.7 0.1 2.3 2 1 0 2 2 2 1 AAA ATPase domain PhoH PF02562.11 gi|452207608|ref|YP_007487730.1| - 0.0041 16.3 0.0 0.0077 15.4 0.0 1.4 1 0 0 1 1 1 1 PhoH-like protein AAA_25 PF13481.1 gi|452207608|ref|YP_007487730.1| - 0.0069 15.8 0.1 0.025 13.9 0.0 2.0 2 0 0 2 2 2 1 AAA domain PIF1 PF05970.9 gi|452207608|ref|YP_007487730.1| - 0.0085 15.0 0.0 1.2 8.0 0.0 2.1 2 0 0 2 2 2 1 PIF1-like helicase AAA PF00004.24 gi|452207608|ref|YP_007487730.1| - 0.01 16.0 0.0 0.061 13.5 0.0 2.1 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) T2SE PF00437.15 gi|452207608|ref|YP_007487730.1| - 0.02 13.8 0.0 0.055 12.3 0.0 1.5 1 1 0 1 1 1 0 Type II/IV secretion system protein CbiA PF01656.18 gi|452207608|ref|YP_007487730.1| - 0.031 13.6 0.0 0.075 12.4 0.0 1.7 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_24 PF13479.1 gi|452207608|ref|YP_007487730.1| - 0.048 13.2 0.0 0.093 12.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.12 gi|452207608|ref|YP_007487730.1| - 0.054 12.9 0.0 0.15 11.5 0.0 1.7 1 0 0 1 1 1 0 IstB-like ATP binding protein SRP54 PF00448.17 gi|452207608|ref|YP_007487730.1| - 0.065 12.6 0.0 1.1 8.6 0.0 2.2 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_5 PF07728.9 gi|452207608|ref|YP_007487730.1| - 0.088 12.5 0.0 0.25 11.0 0.0 1.7 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) Arch_ATPase PF01637.13 gi|452207608|ref|YP_007487730.1| - 0.16 11.6 0.0 0.54 9.9 0.0 1.8 2 0 0 2 2 2 0 Archaeal ATPase TrwB_AAD_bind PF10412.4 gi|452207608|ref|YP_007487730.1| - 0.2 10.2 0.0 0.33 9.5 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain KaiC PF06745.8 gi|452207608|ref|YP_007487730.1| - 0.22 10.6 0.0 0.37 9.8 0.0 1.3 1 0 0 1 1 1 0 KaiC SnoaL_3 PF13474.1 gi|452207609|ref|YP_007487731.1| - 8.1e-08 32.3 1.5 1.3e-07 31.6 1.0 1.3 1 1 0 1 1 1 1 SnoaL-like domain DUF3225 PF11533.3 gi|452207609|ref|YP_007487731.1| - 0.0023 17.6 0.4 0.0064 16.1 0.3 1.9 1 1 0 1 1 1 1 Protein of unknown function (DUF3225) SnoaL_2 PF12680.2 gi|452207609|ref|YP_007487731.1| - 0.069 13.5 4.7 0.11 12.8 3.3 1.5 1 1 0 1 1 1 0 SnoaL-like domain DZR PF12773.2 gi|452207611|ref|YP_007487733.1| - 0.00022 20.9 0.6 0.0003 20.5 0.4 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|452207611|ref|YP_007487733.1| - 0.00055 19.0 1.4 0.00082 18.5 1.0 1.3 1 0 0 1 1 1 1 zinc-ribbon domain Ig_3 PF13927.1 gi|452207611|ref|YP_007487733.1| - 0.042 14.3 0.1 0.065 13.7 0.0 1.3 1 0 0 1 1 1 0 Immunoglobulin domain zinc_ribbon_2 PF13240.1 gi|452207611|ref|YP_007487733.1| - 0.074 12.5 2.8 0.13 11.7 1.9 1.4 1 0 0 1 1 1 0 zinc-ribbon domain DUF2342 PF10103.4 gi|452207612|ref|YP_007487734.1| - 5.9e-85 285.2 5.2 6.3e-47 160.1 0.3 2.0 1 1 1 2 2 2 2 Uncharacterised conserved protein (DUF2342) Peptidase_MA_2 PF13485.1 gi|452207612|ref|YP_007487734.1| - 0.00034 20.6 0.6 0.00084 19.3 0.4 1.7 1 1 0 1 1 1 1 Peptidase MA superfamily Glutaredoxin PF00462.19 gi|452207613|ref|YP_007487735.1| - 2.5e-15 56.2 0.0 3.3e-15 55.8 0.0 1.2 1 0 0 1 1 1 1 Glutaredoxin GST_N_3 PF13417.1 gi|452207613|ref|YP_007487735.1| - 7.6e-14 51.6 0.0 9.1e-14 51.4 0.0 1.0 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N_2 PF13409.1 gi|452207613|ref|YP_007487735.1| - 2.3e-08 33.9 0.0 2.7e-08 33.6 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain DUF836 PF05768.9 gi|452207613|ref|YP_007487735.1| - 0.00037 20.6 0.1 0.00056 20.1 0.0 1.5 1 1 0 1 1 1 1 Glutaredoxin-like domain (DUF836) NTP_transf_3 PF12804.2 gi|452207613|ref|YP_007487735.1| - 0.049 13.6 0.0 0.057 13.4 0.0 1.0 1 0 0 1 1 1 0 MobA-like NTP transferase domain Thioredoxin_3 PF13192.1 gi|452207613|ref|YP_007487735.1| - 0.064 13.0 0.0 0.074 12.8 0.0 1.2 1 0 0 1 1 1 0 Thioredoxin domain DUF2296 PF10058.4 gi|452207614|ref|YP_007487736.1| - 0.059 13.1 0.2 0.28 10.9 0.2 1.9 2 0 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) AhpC-TSA PF00578.16 gi|452207615|ref|YP_007487737.1| - 5.3e-15 55.1 0.0 6.2e-15 54.9 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|452207615|ref|YP_007487737.1| - 0.0014 18.1 0.0 0.0026 17.2 0.0 1.6 1 1 0 1 1 1 1 Redoxin CoA_transf_3 PF02515.12 gi|452207616|ref|YP_007487738.1| - 2.4e-58 196.5 0.0 3.3e-58 196.0 0.0 1.2 1 0 0 1 1 1 1 CoA-transferase family III PGM_PMM_II PF02879.11 gi|452207616|ref|YP_007487738.1| - 0.086 13.1 0.0 0.3 11.4 0.0 1.9 1 0 0 1 1 1 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II EamA PF00892.15 gi|452207617|ref|YP_007487739.1| - 1.5e-38 131.6 30.3 6.9e-21 74.5 9.1 2.1 2 0 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|452207617|ref|YP_007487739.1| - 3.6e-05 23.9 8.0 3.6e-05 23.9 5.5 4.0 2 2 2 4 4 4 2 Multidrug resistance efflux transporter Mg_trans_NIPA PF05653.9 gi|452207617|ref|YP_007487739.1| - 0.0027 16.7 1.9 0.0027 16.7 1.3 2.6 1 1 1 3 3 3 1 Magnesium transporter NIPA Nuc_sug_transp PF04142.10 gi|452207617|ref|YP_007487739.1| - 0.071 12.1 0.1 0.071 12.1 0.1 2.1 2 1 0 2 2 2 0 Nucleotide-sugar transporter TPT PF03151.11 gi|452207617|ref|YP_007487739.1| - 0.28 10.8 23.2 0.62 9.7 7.7 2.4 2 0 0 2 2 2 0 Triose-phosphate Transporter family UAA PF08449.6 gi|452207617|ref|YP_007487739.1| - 0.67 8.8 10.4 0.75 8.6 5.3 2.1 1 1 2 3 3 3 0 UAA transporter family DUF914 PF06027.7 gi|452207617|ref|YP_007487739.1| - 6.8 5.4 12.3 21 3.8 8.6 1.8 1 1 0 1 1 1 0 Eukaryotic protein of unknown function (DUF914) Cons_hypoth698 PF03601.9 gi|452207618|ref|YP_007487740.1| - 3.4e-54 183.5 23.2 4.4e-54 183.1 16.1 1.1 1 0 0 1 1 1 1 Conserved hypothetical protein 698 DUF2417 PF10329.4 gi|452207618|ref|YP_007487740.1| - 0.21 10.9 9.9 0.02 14.3 3.2 2.0 2 1 0 2 2 2 0 Region of unknown function (DUF2417) Rhomboid PF01694.17 gi|452207619|ref|YP_007487741.1| - 4.4e-06 26.7 13.0 4.4e-06 26.7 9.0 2.8 2 1 0 2 2 2 1 Rhomboid family Colicin_V PF02674.11 gi|452207619|ref|YP_007487741.1| - 0.013 15.3 0.3 0.013 15.3 0.2 3.1 2 1 1 3 3 3 0 Colicin V production protein DUF1751 PF08551.5 gi|452207619|ref|YP_007487741.1| - 0.04 14.2 0.8 0.11 12.8 0.0 2.1 3 0 0 3 3 3 0 Eukaryotic integral membrane protein (DUF1751) Methyltransf_26 PF13659.1 gi|452207620|ref|YP_007487742.1| - 5.5e-16 58.6 0.4 8.5e-16 58.0 0.2 1.4 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|452207620|ref|YP_007487742.1| - 4e-13 49.3 0.0 5.1e-13 48.9 0.0 1.1 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 MTS PF05175.9 gi|452207620|ref|YP_007487742.1| - 3.5e-12 46.0 0.0 5.2e-12 45.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.8 gi|452207620|ref|YP_007487742.1| - 3e-10 39.7 0.1 4.3e-10 39.1 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_18 PF12847.2 gi|452207620|ref|YP_007487742.1| - 1.7e-09 38.2 0.0 2.3e-09 37.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|452207620|ref|YP_007487742.1| - 1.4e-08 34.5 0.0 2e-08 33.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|452207620|ref|YP_007487742.1| - 3e-08 33.9 0.0 7.5e-08 32.6 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|452207620|ref|YP_007487742.1| - 4.7e-08 33.4 0.0 1e-07 32.3 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|452207620|ref|YP_007487742.1| - 3.6e-06 26.5 0.0 5e-06 26.0 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Ubie_methyltran PF01209.13 gi|452207620|ref|YP_007487742.1| - 5.1e-06 25.7 0.0 8e-06 25.1 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.1 gi|452207620|ref|YP_007487742.1| - 4.9e-05 23.1 0.0 4.9e-05 23.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|452207620|ref|YP_007487742.1| - 0.00058 20.2 0.0 0.0012 19.2 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.5 gi|452207620|ref|YP_007487742.1| - 0.0017 17.9 0.0 0.003 17.1 0.0 1.4 2 0 0 2 2 2 1 RNA cap guanine-N2 methyltransferase Methyltransf_9 PF08003.6 gi|452207620|ref|YP_007487742.1| - 0.002 16.8 0.0 0.0026 16.5 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) Methyltransf_32 PF13679.1 gi|452207620|ref|YP_007487742.1| - 0.0028 17.3 0.0 0.0036 16.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain FtsJ PF01728.14 gi|452207620|ref|YP_007487742.1| - 0.008 16.1 0.0 0.013 15.5 0.0 1.3 1 0 0 1 1 1 1 FtsJ-like methyltransferase Met_10 PF02475.11 gi|452207620|ref|YP_007487742.1| - 0.01 15.4 0.0 0.014 14.9 0.0 1.2 1 0 0 1 1 1 0 Met-10+ like-protein PCMT PF01135.14 gi|452207620|ref|YP_007487742.1| - 0.012 15.1 0.0 0.016 14.7 0.0 1.1 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) NodS PF05401.6 gi|452207620|ref|YP_007487742.1| - 0.044 13.1 0.0 0.056 12.8 0.0 1.2 1 0 0 1 1 1 0 Nodulation protein S (NodS) CMAS PF02353.15 gi|452207620|ref|YP_007487742.1| - 0.058 12.4 0.0 0.073 12.1 0.0 1.1 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase FmrO PF07091.6 gi|452207620|ref|YP_007487742.1| - 0.068 12.1 0.0 0.095 11.6 0.0 1.3 1 0 0 1 1 1 0 Ribosomal RNA methyltransferase (FmrO) N6_Mtase PF02384.11 gi|452207620|ref|YP_007487742.1| - 0.075 12.1 0.0 0.33 9.9 0.0 1.8 1 1 0 1 1 1 0 N-6 DNA Methylase RrnaAD PF00398.15 gi|452207620|ref|YP_007487742.1| - 0.081 11.9 0.0 0.11 11.5 0.0 1.1 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Abhydrolase_6 PF12697.2 gi|452207620|ref|YP_007487742.1| - 0.11 12.3 3.3 0.18 11.6 2.3 1.4 1 1 0 1 1 1 0 Alpha/beta hydrolase family TFIIB PF00382.14 gi|452207622|ref|YP_007487744.1| - 2.5e-40 136.1 0.3 2.8e-20 71.8 0.0 2.2 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|452207622|ref|YP_007487744.1| - 2.6e-16 58.6 2.5 1.4e-15 56.3 1.7 2.1 2 0 0 2 2 2 1 TFIIB zinc-binding RRN7 PF11781.3 gi|452207622|ref|YP_007487744.1| - 0.027 13.9 2.4 0.048 13.1 1.6 1.4 1 0 0 1 1 1 0 RNA polymerase I-specific transcription initiation factor Rrn7 OrfB_Zn_ribbon PF07282.6 gi|452207622|ref|YP_007487744.1| - 0.048 13.3 0.9 0.12 12.0 0.6 1.6 1 0 0 1 1 1 0 Putative transposase DNA-binding domain DZR PF12773.2 gi|452207622|ref|YP_007487744.1| - 0.059 13.2 0.8 0.11 12.3 0.6 1.4 1 0 0 1 1 1 0 Double zinc ribbon Sigma70_r4 PF04545.11 gi|452207622|ref|YP_007487744.1| - 0.099 11.9 2.3 0.69 9.2 0.0 3.1 4 0 0 4 4 4 0 Sigma-70, region 4 Nudix_N_2 PF14803.1 gi|452207622|ref|YP_007487744.1| - 0.18 11.5 1.7 0.57 9.9 1.2 1.9 1 1 0 1 1 1 0 Nudix N-terminal zf-ribbon_3 PF13248.1 gi|452207622|ref|YP_007487744.1| - 0.27 10.5 1.3 0.55 9.5 0.9 1.5 1 0 0 1 1 1 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|452207622|ref|YP_007487744.1| - 2 8.4 4.9 3.5 7.6 0.5 2.4 1 1 1 2 2 2 0 Zinc ribbon domain DeoC PF01791.4 gi|452207623|ref|YP_007487745.1| - 2.8e-13 49.7 5.9 4.1e-09 36.0 3.6 2.0 1 1 1 2 2 2 2 DeoC/LacD family aldolase Radical_SAM PF04055.16 gi|452207624|ref|YP_007487746.1| - 2.2e-22 80.0 0.1 3.8e-22 79.2 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily UPF0004 PF00919.15 gi|452207624|ref|YP_007487746.1| - 9.5e-20 70.2 0.1 2.1e-19 69.1 0.1 1.6 1 0 0 1 1 1 1 Uncharacterized protein family UPF0004 Cation_efflux PF01545.16 gi|452207625|ref|YP_007487747.1| - 3.2e-56 190.4 6.0 4e-56 190.1 4.1 1.0 1 0 0 1 1 1 1 Cation efflux family BON PF04972.12 gi|452207625|ref|YP_007487747.1| - 0.039 13.7 1.1 0.14 11.9 0.0 2.5 3 0 0 3 3 3 0 BON domain Phage_holin_1 PF04531.8 gi|452207625|ref|YP_007487747.1| - 0.77 9.8 4.3 0.51 10.4 0.1 2.6 2 1 1 3 3 3 0 Bacteriophage holin HIT PF01230.18 gi|452207626|ref|YP_007487748.1| - 5.4e-16 58.9 0.0 8.5e-16 58.2 0.0 1.3 1 0 0 1 1 1 1 HIT domain CwfJ_C_1 PF04677.10 gi|452207626|ref|YP_007487748.1| - 0.00043 19.9 0.0 0.00059 19.4 0.0 1.3 1 1 0 1 1 1 1 Protein similar to CwfJ C-terminus 1 DcpS_C PF11969.3 gi|452207626|ref|YP_007487748.1| - 0.00044 20.4 0.0 0.00065 19.9 0.0 1.2 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding DAN PF03045.10 gi|452207627|ref|YP_007487749.1| - 0.0092 15.3 0.6 0.01 15.2 0.4 1.0 1 0 0 1 1 1 1 DAN domain DUF866 PF05907.8 gi|452207627|ref|YP_007487749.1| - 0.03 13.8 0.9 0.035 13.5 0.6 1.1 1 0 0 1 1 1 0 Eukaryotic protein of unknown function (DUF866) Lar_restr_allev PF14354.1 gi|452207627|ref|YP_007487749.1| - 0.049 13.9 0.7 0.064 13.5 0.5 1.2 1 0 0 1 1 1 0 Restriction alleviation protein Lar zf-ISL3 PF14690.1 gi|452207627|ref|YP_007487749.1| - 0.071 13.1 1.3 7.2 6.7 0.0 2.2 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NOB1_Zn_bind PF08772.6 gi|452207627|ref|YP_007487749.1| - 0.1 12.3 0.1 0.1 12.3 0.0 1.8 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like CpXC PF14353.1 gi|452207627|ref|YP_007487749.1| - 0.4 10.6 2.1 0.52 10.2 1.4 1.1 1 0 0 1 1 1 0 CpXC protein DeoC PF01791.4 gi|452207628|ref|YP_007487750.1| - 2.9e-38 131.5 0.0 3.4e-38 131.2 0.0 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase Glyco_hydro_3_C PF01915.17 gi|452207628|ref|YP_007487750.1| - 0.085 12.3 0.0 0.1 12.1 0.0 1.2 1 0 0 1 1 1 0 Glycosyl hydrolase family 3 C-terminal domain FBPase PF00316.15 gi|452207629|ref|YP_007487751.1| - 5.8e-59 199.5 0.0 7e-59 199.2 0.0 1.0 1 0 0 1 1 1 1 Fructose-1-6-bisphosphatase UPF0104 PF03706.8 gi|452207630|ref|YP_007487752.1| - 0.03 13.6 5.2 0.033 13.4 3.6 1.1 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0104) DUF3792 PF12670.2 gi|452207630|ref|YP_007487752.1| - 0.066 13.0 1.7 0.073 12.9 1.2 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3792) CopD PF05425.8 gi|452207630|ref|YP_007487752.1| - 0.15 12.2 6.6 0.2 11.8 4.6 1.2 1 0 0 1 1 1 0 Copper resistance protein D DUF4231 PF14015.1 gi|452207630|ref|YP_007487752.1| - 0.19 11.7 2.1 0.21 11.5 1.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4231) DUF1469 PF07332.6 gi|452207630|ref|YP_007487752.1| - 0.24 11.1 6.5 0.31 10.7 4.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) CcmD PF04995.9 gi|452207630|ref|YP_007487752.1| - 2.2 8.0 9.2 1.4 8.7 0.7 2.3 2 0 0 2 2 2 0 Heme exporter protein D (CcmD) DUF460 PF04312.8 gi|452207632|ref|YP_007487754.1| - 4.8e-50 168.6 1.3 1.5e-49 167.0 0.5 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF460) GAS PF13851.1 gi|452207632|ref|YP_007487754.1| - 0.0026 16.9 13.6 0.009 15.2 9.4 1.9 1 0 0 1 1 1 1 Growth-arrest specific micro-tubule binding BLOC1_2 PF10046.4 gi|452207632|ref|YP_007487754.1| - 0.0032 17.5 7.0 0.022 14.8 1.7 2.9 2 0 0 2 2 2 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 AAA_13 PF13166.1 gi|452207632|ref|YP_007487754.1| - 0.0061 15.0 7.3 0.01 14.3 5.0 1.3 1 0 0 1 1 1 1 AAA domain DUF641 PF04859.7 gi|452207632|ref|YP_007487754.1| - 0.0073 16.0 5.1 0.0073 16.0 3.6 3.1 2 1 1 3 3 2 1 Plant protein of unknown function (DUF641) Exonuc_VII_L PF02601.10 gi|452207632|ref|YP_007487754.1| - 0.01 15.0 1.5 0.018 14.2 1.0 1.5 1 0 0 1 1 1 0 Exonuclease VII, large subunit APG6 PF04111.7 gi|452207632|ref|YP_007487754.1| - 0.012 14.7 17.2 0.033 13.2 11.9 1.7 1 0 0 1 1 1 0 Autophagy protein Apg6 Herpes_UL6 PF01763.11 gi|452207632|ref|YP_007487754.1| - 0.029 12.5 4.0 0.045 11.9 2.8 1.3 1 0 0 1 1 1 0 Herpesvirus UL6 like MAD PF05557.8 gi|452207632|ref|YP_007487754.1| - 0.03 12.4 17.4 0.063 11.3 12.1 1.5 1 0 0 1 1 1 0 Mitotic checkpoint protein DUF1664 PF07889.7 gi|452207632|ref|YP_007487754.1| - 0.097 12.4 6.1 0.4 10.4 3.7 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) Atg14 PF10186.4 gi|452207632|ref|YP_007487754.1| - 0.15 10.9 17.0 0.0071 15.3 7.8 1.6 2 0 0 2 2 1 0 UV radiation resistance protein and autophagy-related subunit 14 Laminin_II PF06009.7 gi|452207632|ref|YP_007487754.1| - 0.16 11.7 8.5 0.41 10.4 5.9 1.7 1 0 0 1 1 1 0 Laminin Domain II ADIP PF11559.3 gi|452207632|ref|YP_007487754.1| - 0.18 11.6 20.6 0.77 9.6 5.1 2.6 1 1 1 2 2 2 0 Afadin- and alpha -actinin-Binding MIF4G_like_2 PF09090.6 gi|452207632|ref|YP_007487754.1| - 0.19 10.9 6.2 0.25 10.5 3.3 1.9 2 0 0 2 2 2 0 MIF4G like Reo_sigmaC PF04582.7 gi|452207632|ref|YP_007487754.1| - 0.25 10.4 0.5 0.58 9.2 0.3 1.5 1 1 1 2 2 2 0 Reovirus sigma C capsid protein Spc7 PF08317.6 gi|452207632|ref|YP_007487754.1| - 0.28 9.8 15.6 0.13 10.8 7.8 2.0 1 1 1 2 2 2 0 Spc7 kinetochore protein NPV_P10 PF05531.7 gi|452207632|ref|YP_007487754.1| - 0.32 11.2 3.4 3.7 7.8 0.3 2.9 3 0 0 3 3 2 0 Nucleopolyhedrovirus P10 protein TMF_DNA_bd PF12329.3 gi|452207632|ref|YP_007487754.1| - 0.32 10.8 28.5 0.42 10.4 0.8 3.2 2 1 1 3 3 3 0 TATA element modulatory factor 1 DNA binding SlyX PF04102.7 gi|452207632|ref|YP_007487754.1| - 0.34 11.3 12.1 4.2 7.8 1.3 3.3 1 1 1 2 2 2 0 SlyX EzrA PF06160.7 gi|452207632|ref|YP_007487754.1| - 0.49 8.5 14.7 0.71 7.9 7.8 2.3 2 1 0 2 2 2 0 Septation ring formation regulator, EzrA TBPIP PF07106.8 gi|452207632|ref|YP_007487754.1| - 0.51 9.8 14.5 9.5 5.7 10.1 2.4 1 1 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) TcdA_TcdB PF12919.2 gi|452207632|ref|YP_007487754.1| - 0.68 8.3 3.6 0.97 7.8 2.5 1.1 1 0 0 1 1 1 0 TcdA/TcdB catalytic glycosyltransferase domain V_ATPase_I PF01496.14 gi|452207632|ref|YP_007487754.1| - 0.92 7.2 17.3 1.7 6.3 4.0 2.0 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family YPEB PF14620.1 gi|452207632|ref|YP_007487754.1| - 0.97 8.3 6.4 2.7 6.9 4.5 1.6 1 1 0 1 1 1 0 YpeB sporulation DUF342 PF03961.8 gi|452207632|ref|YP_007487754.1| - 1.1 7.6 9.6 1.9 6.8 6.7 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF342) Mnd1 PF03962.10 gi|452207632|ref|YP_007487754.1| - 1.2 8.7 21.9 0.034 13.8 9.7 2.2 2 0 0 2 2 2 0 Mnd1 family DUF812 PF05667.6 gi|452207632|ref|YP_007487754.1| - 1.6 7.1 19.6 2.1 6.7 10.6 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF812) Fib_alpha PF08702.5 gi|452207632|ref|YP_007487754.1| - 1.8 8.6 6.3 2.1 8.4 1.1 2.0 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family AKNA PF12443.3 gi|452207632|ref|YP_007487754.1| - 2 8.4 7.0 0.61 10.1 1.1 2.4 1 1 1 2 2 2 0 AT-hook-containing transcription factor FlaC_arch PF05377.6 gi|452207632|ref|YP_007487754.1| - 2.4 8.0 12.4 2.5 8.0 1.3 3.2 2 1 0 2 2 2 0 Flagella accessory protein C (FlaC) Occludin_ELL PF07303.8 gi|452207632|ref|YP_007487754.1| - 2.7 8.7 13.2 11 6.8 7.2 3.1 2 1 0 2 2 2 0 Occludin homology domain Tho2 PF11262.3 gi|452207632|ref|YP_007487754.1| - 2.7 6.9 11.1 1.2 8.1 5.0 1.9 1 1 1 2 2 2 0 Transcription factor/nuclear export subunit protein 2 Spc24 PF08286.6 gi|452207632|ref|YP_007487754.1| - 2.8 7.6 16.9 3.5 7.3 4.7 2.7 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 DUF4200 PF13863.1 gi|452207632|ref|YP_007487754.1| - 3.2 7.7 29.3 0.19 11.6 15.1 2.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4200) DUF1423 PF07227.6 gi|452207632|ref|YP_007487754.1| - 3.7 6.1 13.5 7.1 5.1 9.4 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1423) DUF904 PF06005.7 gi|452207632|ref|YP_007487754.1| - 4.6 7.6 24.3 3.7 7.9 5.3 2.7 1 1 1 2 2 2 0 Protein of unknown function (DUF904) Cep57_CLD PF14073.1 gi|452207632|ref|YP_007487754.1| - 5.1 6.8 21.3 3.6 7.3 7.1 2.4 1 1 1 2 2 2 0 Centrosome localisation domain of Cep57 Med9 PF07544.8 gi|452207632|ref|YP_007487754.1| - 5.4 6.8 16.0 0.31 10.7 4.1 2.7 1 1 0 2 2 2 0 RNA polymerase II transcription mediator complex subunit 9 ATG16 PF08614.6 gi|452207632|ref|YP_007487754.1| - 6.2 6.5 27.1 0.61 9.8 15.2 2.0 2 1 0 2 2 1 0 Autophagy protein 16 (ATG16) Bacillus_HBL PF05791.6 gi|452207632|ref|YP_007487754.1| - 6.4 6.1 5.5 11 5.2 0.3 2.3 1 1 1 2 2 2 0 Bacillus haemolytic enterotoxin (HBL) Prefoldin_2 PF01920.15 gi|452207632|ref|YP_007487754.1| - 6.7 6.5 20.6 3 7.6 5.9 2.9 2 0 0 2 2 2 0 Prefoldin subunit Prefoldin PF02996.12 gi|452207632|ref|YP_007487754.1| - 8.7 6.0 16.2 0.55 9.8 2.4 2.8 3 0 0 3 3 2 0 Prefoldin subunit Bap31 PF05529.7 gi|452207632|ref|YP_007487754.1| - 8.7 5.7 12.1 14 5.1 0.3 2.3 1 1 1 2 2 2 0 B-cell receptor-associated protein 31-like Phage_GP20 PF06810.6 gi|452207632|ref|YP_007487754.1| - 9.6 5.6 12.7 3.3 7.1 2.9 2.6 1 1 1 2 2 2 0 Phage minor structural protein GP20 CBS PF00571.23 gi|452207633|ref|YP_007487755.1| - 5.3e-13 48.5 1.6 2.4e-05 24.0 0.1 2.8 2 1 0 2 2 2 2 CBS domain Usp PF00582.21 gi|452207634|ref|YP_007487756.1| - 6.9e-54 181.8 13.2 4.8e-27 94.8 1.0 2.0 2 0 0 2 2 2 2 Universal stress protein family Slp PF03843.8 gi|452207634|ref|YP_007487756.1| - 0.037 13.0 0.0 0.061 12.3 0.0 1.3 1 0 0 1 1 1 0 Outer membrane lipoprotein Slp family LEH PF07858.7 gi|452207634|ref|YP_007487756.1| - 0.13 12.2 1.9 1.5 8.8 0.1 2.3 2 0 0 2 2 2 0 Limonene-1,2-epoxide hydrolase catalytic domain Usp PF00582.21 gi|452207635|ref|YP_007487757.1| - 9.8e-08 32.2 0.2 1.2e-07 32.0 0.2 1.2 1 0 0 1 1 1 1 Universal stress protein family DUF72 PF01904.13 gi|452207635|ref|YP_007487757.1| - 0.076 12.7 0.0 0.1 12.3 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function DUF72 MS_channel PF00924.13 gi|452207636|ref|YP_007487758.1| - 1.1e-52 178.3 0.0 1.5e-52 177.9 0.0 1.2 1 0 0 1 1 1 1 Mechanosensitive ion channel MatC_N PF07158.6 gi|452207636|ref|YP_007487758.1| - 0.039 13.7 5.6 0.068 12.9 3.9 1.3 1 0 0 1 1 1 0 Dicarboxylate carrier protein MatC N-terminus CRS1_YhbY PF01985.16 gi|452207637|ref|YP_007487759.1| - 2e-10 40.5 0.0 2.4e-10 40.2 0.0 1.1 1 0 0 1 1 1 1 CRS1 / YhbY (CRM) domain Rpr2 PF04032.11 gi|452207638|ref|YP_007487760.1| - 6.5e-18 64.3 0.1 7.6e-18 64.1 0.1 1.0 1 0 0 1 1 1 1 RNAse P Rpr2/Rpp21/SNM1 subunit domain DUF1771 PF08590.5 gi|452207638|ref|YP_007487760.1| - 0.054 13.5 0.5 0.081 12.9 0.3 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1771) PvlArgDC PF01862.11 gi|452207640|ref|YP_007487762.1| - 1.4e-20 73.5 0.0 1.6e-20 73.3 0.0 1.0 1 0 0 1 1 1 1 Pyruvoyl-dependent arginine decarboxylase (PvlArgDC) Antitoxin-MazE PF04014.13 gi|452207641|ref|YP_007487763.1| - 0.0002 21.0 0.0 0.00029 20.5 0.0 1.2 1 0 0 1 1 1 1 Antidote-toxin recognition MazE UvrD_C PF13361.1 gi|452207643|ref|YP_007487765.1| - 9.4e-06 25.3 0.0 5.5e-05 22.7 0.0 1.9 1 1 0 2 2 2 1 UvrD-like helicase C-terminal domain Tautomerase PF01361.16 gi|452207643|ref|YP_007487765.1| - 2.8 7.5 9.2 1.1 8.9 0.1 3.6 4 0 0 4 4 4 0 Tautomerase enzyme PDDEXK_1 PF12705.2 gi|452207644|ref|YP_007487766.1| - 2.4e-36 125.4 1.2 2.9e-36 125.1 0.9 1.1 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily DUF2800 PF10926.3 gi|452207644|ref|YP_007487766.1| - 0.0055 15.8 0.1 0.0077 15.3 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF2800) Cas_Cas4 PF01930.12 gi|452207644|ref|YP_007487766.1| - 0.0099 15.8 0.3 0.67 9.8 0.0 2.9 3 0 0 3 3 3 1 Domain of unknown function DUF83 UvrD-helicase PF00580.16 gi|452207645|ref|YP_007487767.1| - 2.4e-55 188.0 0.0 3.4e-27 95.5 0.0 2.3 2 0 0 2 2 2 2 UvrD/REP helicase N-terminal domain UvrD_C PF13361.1 gi|452207645|ref|YP_007487767.1| - 2.6e-35 122.5 0.0 9.5e-35 120.6 0.0 1.8 2 0 0 2 2 2 1 UvrD-like helicase C-terminal domain PDDEXK_1 PF12705.2 gi|452207645|ref|YP_007487767.1| - 1.6e-33 116.1 2.9 1.8e-33 116.0 0.7 2.1 2 0 0 2 2 2 1 PD-(D/E)XK nuclease superfamily AAA_19 PF13245.1 gi|452207645|ref|YP_007487767.1| - 1.1e-11 44.2 0.0 2.9e-11 42.9 0.0 1.7 1 0 0 1 1 1 1 Part of AAA domain UvrD_C_2 PF13538.1 gi|452207645|ref|YP_007487767.1| - 1.1e-06 28.7 0.0 9.6e-06 25.6 0.0 2.5 1 1 0 1 1 1 1 UvrD-like helicase C-terminal domain AAA_30 PF13604.1 gi|452207645|ref|YP_007487767.1| - 2.4e-06 27.2 0.0 7.3e-05 22.4 0.0 2.5 2 0 0 2 2 2 1 AAA domain DUF2800 PF10926.3 gi|452207645|ref|YP_007487767.1| - 0.0099 15.0 0.0 0.031 13.4 0.0 1.7 1 1 0 1 1 1 1 Protein of unknown function (DUF2800) AAA_11 PF13086.1 gi|452207645|ref|YP_007487767.1| - 0.015 14.8 0.0 0.027 14.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain DDE_Tnp_IS66 PF03050.9 gi|452207646|ref|YP_007487768.1| - 5.4e-54 183.2 0.2 9.5e-54 182.4 0.1 1.4 1 0 0 1 1 1 1 Transposase IS66 family zf-IS66 PF13005.2 gi|452207646|ref|YP_007487768.1| - 0.0003 20.7 7.3 0.0009 19.1 5.1 1.9 1 0 0 1 1 1 1 zinc-finger binding domain of transposase IS66 Transposase_mut PF00872.13 gi|452207646|ref|YP_007487768.1| - 0.018 13.6 0.0 0.034 12.6 0.0 1.4 1 0 0 1 1 1 0 Transposase, Mutator family DDE_Tnp_IS240 PF13610.1 gi|452207646|ref|YP_007487768.1| - 0.1 12.5 0.2 0.32 10.9 0.1 1.9 1 1 0 1 1 1 0 DDE domain DivIC PF04977.10 gi|452207646|ref|YP_007487768.1| - 0.12 11.9 0.1 0.12 11.9 0.1 2.2 3 0 0 3 3 3 0 Septum formation initiator DUF972 PF06156.8 gi|452207646|ref|YP_007487768.1| - 0.12 12.7 3.2 0.11 12.8 0.8 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF972) NYD-SP28_assoc PF14775.1 gi|452207646|ref|YP_007487768.1| - 0.14 11.8 2.3 0.45 10.2 1.6 1.9 1 0 0 1 1 1 0 Sperm tail C-terminal domain HALZ PF02183.13 gi|452207646|ref|YP_007487768.1| - 1.2 8.9 6.1 1.8 8.3 2.6 2.3 2 0 0 2 2 2 0 Homeobox associated leucine zipper AAA_5 PF07728.9 gi|452207647|ref|YP_007487769.1| - 6.8e-18 64.7 0.0 1.6e-17 63.4 0.0 1.7 2 0 0 2 2 1 1 AAA domain (dynein-related subfamily) AAA PF00004.24 gi|452207647|ref|YP_007487769.1| - 5.3e-07 29.8 0.0 1.3e-06 28.5 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|452207647|ref|YP_007487769.1| - 1.3e-06 28.5 0.0 3.5e-06 27.1 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|452207647|ref|YP_007487769.1| - 1.6e-06 28.9 0.8 1.3e-05 26.0 0.5 2.6 1 1 0 1 1 1 1 AAA domain AAA_3 PF07726.6 gi|452207647|ref|YP_007487769.1| - 4.9e-06 26.1 0.0 2e-05 24.2 0.0 1.9 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.1 gi|452207647|ref|YP_007487769.1| - 8.5e-05 22.4 0.0 0.00033 20.5 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|452207647|ref|YP_007487769.1| - 8.9e-05 21.9 0.0 0.0002 20.8 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|452207647|ref|YP_007487769.1| - 0.00011 22.4 0.9 0.0012 19.1 0.0 2.6 2 0 0 2 2 2 1 AAA domain UPF0079 PF02367.12 gi|452207647|ref|YP_007487769.1| - 0.00016 21.2 0.0 0.00039 20.0 0.0 1.6 1 0 0 1 1 1 1 Uncharacterised P-loop hydrolase UPF0079 ABC_tran PF00005.22 gi|452207647|ref|YP_007487769.1| - 0.00028 21.2 0.0 0.00067 19.9 0.0 1.7 1 1 0 1 1 1 1 ABC transporter AAA_33 PF13671.1 gi|452207647|ref|YP_007487769.1| - 0.00034 20.4 0.0 0.0006 19.7 0.0 1.6 1 0 0 1 1 1 1 AAA domain Arch_ATPase PF01637.13 gi|452207647|ref|YP_007487769.1| - 0.00039 20.2 0.2 0.0049 16.5 0.0 2.6 2 1 0 2 2 2 1 Archaeal ATPase RNA_helicase PF00910.17 gi|452207647|ref|YP_007487769.1| - 0.0012 18.9 0.0 0.0025 17.9 0.0 1.5 1 0 0 1 1 1 1 RNA helicase AAA_24 PF13479.1 gi|452207647|ref|YP_007487769.1| - 0.0014 18.2 0.2 0.0027 17.3 0.1 1.5 1 0 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|452207647|ref|YP_007487769.1| - 0.0016 18.1 0.1 0.014 15.0 0.0 2.1 2 0 0 2 2 2 1 NACHT domain AAA_19 PF13245.1 gi|452207647|ref|YP_007487769.1| - 0.0044 16.7 0.1 0.012 15.3 0.1 1.8 1 0 0 1 1 1 1 Part of AAA domain AAA_28 PF13521.1 gi|452207647|ref|YP_007487769.1| - 0.0054 16.6 0.2 0.014 15.3 0.1 1.7 1 0 0 1 1 1 1 AAA domain RuvB_N PF05496.7 gi|452207647|ref|YP_007487769.1| - 0.006 15.6 0.3 0.015 14.3 0.0 1.7 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus IstB_IS21 PF01695.12 gi|452207647|ref|YP_007487769.1| - 0.0075 15.6 0.0 0.019 14.3 0.0 1.6 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_16 PF13191.1 gi|452207647|ref|YP_007487769.1| - 0.0077 16.2 1.5 0.18 11.7 0.0 3.2 4 0 0 4 4 3 1 AAA ATPase domain IPT PF01745.11 gi|452207647|ref|YP_007487769.1| - 0.0078 15.4 0.1 0.018 14.2 0.0 1.5 1 0 0 1 1 1 1 Isopentenyl transferase Sigma54_activat PF00158.21 gi|452207647|ref|YP_007487769.1| - 0.0083 15.6 0.0 0.023 14.1 0.0 1.7 2 0 0 2 2 2 1 Sigma-54 interaction domain Mg_chelatase PF01078.16 gi|452207647|ref|YP_007487769.1| - 0.0095 15.1 0.1 0.033 13.3 0.0 1.8 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI NB-ARC PF00931.17 gi|452207647|ref|YP_007487769.1| - 0.017 14.0 0.2 0.082 11.7 0.0 1.9 2 0 0 2 2 2 0 NB-ARC domain AAA_23 PF13476.1 gi|452207647|ref|YP_007487769.1| - 0.018 15.3 0.6 0.07 13.4 0.0 2.1 2 1 0 2 2 2 0 AAA domain T2SE PF00437.15 gi|452207647|ref|YP_007487769.1| - 0.022 13.6 0.0 0.044 12.6 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein PhoH PF02562.11 gi|452207647|ref|YP_007487769.1| - 0.024 13.8 0.1 0.073 12.2 0.1 1.8 1 0 0 1 1 1 0 PhoH-like protein Sigma54_activ_2 PF14532.1 gi|452207647|ref|YP_007487769.1| - 0.033 14.2 0.0 0.064 13.3 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_10 PF12846.2 gi|452207647|ref|YP_007487769.1| - 0.062 12.7 0.8 3.2 7.1 0.0 2.5 1 1 0 2 2 2 0 AAA-like domain MobB PF03205.9 gi|452207647|ref|YP_007487769.1| - 0.088 12.5 0.3 0.26 11.0 0.0 1.8 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_30 PF13604.1 gi|452207647|ref|YP_007487769.1| - 0.089 12.3 0.0 0.16 11.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|452207647|ref|YP_007487769.1| - 0.15 11.2 0.0 0.26 10.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 Miro PF08477.8 gi|452207647|ref|YP_007487769.1| - 0.15 12.5 0.0 0.43 11.0 0.0 1.7 2 0 0 2 2 1 0 Miro-like protein McrBC PF10117.4 gi|452207648|ref|YP_007487770.1| - 1.9e-12 46.7 0.0 6.7e-12 44.9 0.0 1.7 1 1 0 1 1 1 1 McrBC 5-methylcytosine restriction system component Big_3_4 PF13754.1 gi|452207648|ref|YP_007487770.1| - 0.063 13.6 1.8 0.14 12.5 1.3 1.5 1 0 0 1 1 1 0 Bacterial Ig-like domain (group 3) HycI PF01750.13 gi|452207649|ref|YP_007487771.1| - 0.035 13.6 0.0 0.049 13.1 0.0 1.2 1 0 0 1 1 1 0 Hydrogenase maturation protease DUF1934 PF09148.5 gi|452207649|ref|YP_007487771.1| - 0.12 12.1 0.1 0.18 11.5 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1934) DUF1156 PF06634.7 gi|452207650|ref|YP_007487772.1| - 4.4e-12 45.5 0.0 8.5e-12 44.6 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1156) Methyltransf_26 PF13659.1 gi|452207650|ref|YP_007487772.1| - 1.2e-11 44.6 0.0 2.7e-06 27.4 0.0 3.2 3 1 0 3 3 3 2 Methyltransferase domain UPF0020 PF01170.13 gi|452207650|ref|YP_007487772.1| - 2.7e-06 27.0 0.1 0.01 15.4 0.0 3.0 3 0 0 3 3 3 2 Putative RNA methylase family UPF0020 N6_N4_Mtase PF01555.13 gi|452207650|ref|YP_007487772.1| - 2.6e-05 23.8 0.0 0.012 15.0 0.0 2.3 2 0 0 2 2 2 2 DNA methylase Cons_hypoth95 PF03602.10 gi|452207650|ref|YP_007487772.1| - 0.00061 19.2 0.1 0.5 9.7 0.0 2.3 2 0 0 2 2 2 2 Conserved hypothetical protein 95 MethyltransfD12 PF02086.10 gi|452207650|ref|YP_007487772.1| - 0.0011 18.4 1.3 0.0031 17.0 0.0 2.1 2 0 0 2 2 2 1 D12 class N6 adenine-specific DNA methyltransferase zf-ribbon_3 PF13248.1 gi|452207650|ref|YP_007487772.1| - 0.0044 16.1 0.9 0.0044 16.1 0.7 3.8 4 0 0 4 4 4 1 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|452207650|ref|YP_007487772.1| - 0.0074 15.5 1.7 0.0074 15.5 1.2 3.6 3 1 1 4 4 4 2 TFIIB zinc-binding ADK_lid PF05191.9 gi|452207650|ref|YP_007487772.1| - 0.1 12.2 6.7 2.4 7.8 0.2 3.4 2 0 0 2 2 2 0 Adenylate kinase, active site lid A2L_zn_ribbon PF08792.5 gi|452207650|ref|YP_007487772.1| - 0.33 10.4 7.8 11 5.6 0.1 3.5 2 1 0 2 2 2 0 A2L zinc ribbon domain zf-NADH-PPase PF09297.6 gi|452207650|ref|YP_007487772.1| - 1.8 8.1 8.8 0.099 12.1 0.2 2.9 3 0 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain Lar_restr_allev PF14354.1 gi|452207650|ref|YP_007487772.1| - 2.3 8.6 11.1 7.8e+02 0.4 7.7 3.4 1 1 0 1 1 1 0 Restriction alleviation protein Lar zinc-ribbons_6 PF07191.7 gi|452207650|ref|YP_007487772.1| - 5 6.9 8.2 47 3.8 5.7 2.5 1 1 0 1 1 1 0 zinc-ribbons zf-ISL3 PF14690.1 gi|452207650|ref|YP_007487772.1| - 5.3 7.1 6.5 23 5.1 0.6 3.9 3 1 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Zn_Tnp_IS1595 PF12760.2 gi|452207650|ref|YP_007487772.1| - 6.6 6.6 15.3 29 4.5 1.7 4.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain DUF2204 PF09970.4 gi|452207651|ref|YP_007487773.1| - 1.2e-05 24.8 3.5 1.8e-05 24.2 2.5 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase of unknown function (DUF2204) TrmB PF01978.14 gi|452207652|ref|YP_007487774.1| - 2.8e-06 26.9 0.1 0.051 13.2 0.0 2.5 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|452207652|ref|YP_007487774.1| - 3.1e-05 23.5 1.4 0.21 11.2 0.1 2.4 2 0 0 2 2 2 2 MarR family HTH_20 PF12840.2 gi|452207652|ref|YP_007487774.1| - 3.2e-05 23.6 0.7 0.14 12.0 0.1 2.4 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_11 PF08279.7 gi|452207652|ref|YP_007487774.1| - 0.00022 20.7 0.4 0.006 16.1 0.1 2.7 2 0 0 2 2 2 1 HTH domain HTH_IclR PF09339.5 gi|452207652|ref|YP_007487774.1| - 0.00033 20.1 1.5 0.0013 18.2 0.1 2.5 3 0 0 3 3 3 1 IclR helix-turn-helix domain HTH_5 PF01022.15 gi|452207652|ref|YP_007487774.1| - 0.00043 19.8 0.0 0.0053 16.3 0.0 2.2 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_Crp_2 PF13545.1 gi|452207652|ref|YP_007487774.1| - 0.00099 18.8 0.1 0.012 15.3 0.0 2.3 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_DeoR PF08220.7 gi|452207652|ref|YP_007487774.1| - 0.0018 17.7 1.2 0.013 15.0 0.1 2.5 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain HTH_27 PF13463.1 gi|452207652|ref|YP_007487774.1| - 0.0023 18.2 4.7 0.62 10.4 0.1 2.8 3 0 0 3 3 3 2 Winged helix DNA-binding domain MarR PF01047.17 gi|452207652|ref|YP_007487774.1| - 0.0047 16.6 0.8 3.5 7.3 0.0 2.5 2 1 0 2 2 2 2 MarR family HTH_12 PF08461.5 gi|452207652|ref|YP_007487774.1| - 0.012 15.2 0.9 0.047 13.4 0.0 2.3 2 0 0 2 2 2 0 Ribonuclease R winged-helix domain Sulfolobus_pRN PF05584.6 gi|452207652|ref|YP_007487774.1| - 0.032 14.1 0.2 0.71 9.8 0.0 2.3 2 0 0 2 2 2 0 Sulfolobus plasmid regulatory protein HTH_34 PF13601.1 gi|452207652|ref|YP_007487774.1| - 0.097 12.7 0.0 0.34 10.9 0.0 1.9 2 0 0 2 2 2 0 Winged helix DNA-binding domain GntR PF00392.16 gi|452207652|ref|YP_007487774.1| - 0.18 11.2 0.9 1.2 8.6 0.0 2.5 3 0 0 3 3 3 0 Bacterial regulatory proteins, gntR family DUF499 PF04465.7 gi|452207653|ref|YP_007487775.1| - 3.8e-10 38.0 0.3 1.8e-06 25.8 0.0 2.8 2 1 0 2 2 2 2 Protein of unknown function (DUF499) SNF2_N PF00176.18 gi|452207654|ref|YP_007487776.1| - 1.8e-40 138.6 0.1 2.9e-40 137.9 0.1 1.3 1 0 0 1 1 1 1 SNF2 family N-terminal domain Helicase_C PF00271.26 gi|452207654|ref|YP_007487776.1| - 1.8e-18 66.1 0.2 6.4e-18 64.3 0.0 2.1 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|452207654|ref|YP_007487776.1| - 3.6e-08 33.4 0.0 1.2e-07 31.6 0.0 1.9 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit DEAD PF00270.24 gi|452207654|ref|YP_007487776.1| - 0.00019 20.9 0.7 0.0019 17.7 0.0 2.6 2 2 1 3 3 3 1 DEAD/DEAH box helicase Helicase_C_2 PF13307.1 gi|452207654|ref|YP_007487776.1| - 0.0024 17.8 0.1 0.0064 16.4 0.0 1.7 1 1 0 1 1 1 1 Helicase C-terminal domain AAA_22 PF13401.1 gi|452207654|ref|YP_007487776.1| - 0.1 12.7 0.9 0.56 10.3 0.0 2.6 2 1 0 2 2 2 0 AAA domain Arg_repressor PF01316.16 gi|452207654|ref|YP_007487776.1| - 9.5 5.8 7.4 6.2 6.4 0.0 3.8 3 1 1 4 4 4 0 Arginine repressor, DNA binding domain TBPIP PF07106.8 gi|452207655|ref|YP_007487777.1| - 0.0084 15.6 9.6 0.0084 15.6 6.7 1.9 1 1 1 2 2 2 1 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Mnd1 PF03962.10 gi|452207655|ref|YP_007487777.1| - 0.057 13.0 15.4 0.19 11.3 10.6 2.0 1 1 0 1 1 1 0 Mnd1 family DUF3362 PF11842.3 gi|452207655|ref|YP_007487777.1| - 0.12 12.3 0.0 0.21 11.5 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3362) L_lactis_ph-MCP PF06673.6 gi|452207655|ref|YP_007487777.1| - 0.13 10.9 1.9 0.29 9.8 1.3 1.5 1 0 0 1 1 1 0 Lactococcus lactis bacteriophage major capsid protein V-ATPase_G PF03179.10 gi|452207655|ref|YP_007487777.1| - 0.25 11.6 19.9 0.85 9.9 6.4 2.7 1 1 0 2 2 2 0 Vacuolar (H+)-ATPase G subunit DUF3332 PF11810.3 gi|452207655|ref|YP_007487777.1| - 0.59 9.7 1.8 0.91 9.1 0.9 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF3332) DUF4200 PF13863.1 gi|452207655|ref|YP_007487777.1| - 0.64 9.9 18.0 2.3 8.2 12.5 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF4200) Syntaxin-6_N PF09177.6 gi|452207655|ref|YP_007487777.1| - 0.75 10.2 10.1 0.5 10.8 2.4 2.9 1 1 2 3 3 3 0 Syntaxin 6, N-terminal IncA PF04156.9 gi|452207655|ref|YP_007487777.1| - 1.1 8.8 24.0 0.9 9.0 15.5 1.7 1 1 0 1 1 1 0 IncA protein bZIP_1 PF00170.16 gi|452207655|ref|YP_007487777.1| - 1.7 8.6 14.2 1.8 8.5 2.1 2.7 1 1 1 2 2 2 0 bZIP transcription factor SlyX PF04102.7 gi|452207655|ref|YP_007487777.1| - 2 8.8 7.8 0.73 10.2 2.6 2.6 2 1 0 2 2 2 0 SlyX DUF342 PF03961.8 gi|452207655|ref|YP_007487777.1| - 2.8 6.2 13.0 8.2 4.7 9.0 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF342) Fmp27_WPPW PF10359.4 gi|452207655|ref|YP_007487777.1| - 3 6.1 12.5 0.83 7.9 6.2 1.6 1 1 1 2 2 2 0 RNA pol II promoter Fmp27 protein domain Atg14 PF10186.4 gi|452207655|ref|YP_007487777.1| - 4.6 6.0 13.9 7.5 5.3 9.7 1.3 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 FemAB PF02388.11 gi|452207655|ref|YP_007487777.1| - 5.3 5.6 12.2 0.81 8.2 2.7 2.2 1 1 1 2 2 2 0 FemAB family DUF1090 PF06476.7 gi|452207655|ref|YP_007487777.1| - 6.1 6.5 16.4 1.4 8.5 5.2 2.9 1 1 2 3 3 3 0 Protein of unknown function (DUF1090) CorA PF01544.13 gi|452207655|ref|YP_007487777.1| - 7.2 5.5 8.7 17 4.3 4.9 2.0 2 0 0 2 2 2 0 CorA-like Mg2+ transporter protein DUF883 PF05957.8 gi|452207655|ref|YP_007487777.1| - 7.4 7.0 8.4 17 5.8 1.6 2.5 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF883) Vps51 PF08700.6 gi|452207655|ref|YP_007487777.1| - 9.6 6.1 9.6 8 6.3 1.9 2.9 2 1 0 2 2 2 0 Vps51/Vps67 AKNA PF12443.3 gi|452207655|ref|YP_007487777.1| - 10 6.2 14.5 1.6 8.8 2.2 3.1 1 1 2 3 3 3 0 AT-hook-containing transcription factor Phage_integrase PF00589.17 gi|452207656|ref|YP_007487778.1| - 1.1e-14 54.5 0.0 7.5e-14 51.7 0.0 2.0 1 1 0 1 1 1 1 Phage integrase family Phage_int_SAM_1 PF02899.12 gi|452207656|ref|YP_007487778.1| - 6.2e-07 29.4 2.2 2.9e-06 27.3 0.1 2.6 3 0 0 3 3 3 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.1 gi|452207656|ref|YP_007487778.1| - 0.0012 19.1 0.2 0.0039 17.4 0.0 2.0 2 0 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain BsuPI PF12690.2 gi|452207657|ref|YP_007487779.1| - 0.085 12.5 0.1 0.17 11.6 0.1 1.5 1 0 0 1 1 1 0 Intracellular proteinase inhibitor Transposase_20 PF02371.11 gi|452207659|ref|YP_007487781.1| - 9.6e-30 102.5 0.0 2.5e-29 101.2 0.0 1.7 1 0 0 1 1 1 1 Transposase IS116/IS110/IS902 family DEDD_Tnp_IS110 PF01548.12 gi|452207659|ref|YP_007487781.1| - 4.6e-26 91.1 0.5 8.1e-26 90.4 0.3 1.4 1 0 0 1 1 1 1 Transposase HHH PF00633.18 gi|452207659|ref|YP_007487781.1| - 0.0023 17.5 0.1 0.007 16.0 0.1 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_3 PF12836.2 gi|452207659|ref|YP_007487781.1| - 0.017 15.0 0.0 0.041 13.8 0.0 1.6 1 0 0 1 1 1 0 Helix-hairpin-helix motif DUF3901 PF13040.1 gi|452207659|ref|YP_007487781.1| - 0.15 11.3 5.0 0.36 10.1 2.5 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3901) Otopetrin PF03189.8 gi|452207660|ref|YP_007487782.1| - 0.038 13.0 0.0 0.041 12.8 0.0 1.2 1 0 0 1 1 1 0 Otopetrin Nitrate_red_gam PF02665.9 gi|452207660|ref|YP_007487782.1| - 0.35 10.1 8.6 0.58 9.4 6.0 1.2 1 0 0 1 1 1 0 Nitrate reductase gamma subunit Tubulin PF00091.20 gi|452207661|ref|YP_007487783.1| - 2.8e-13 50.2 0.0 1.7e-12 47.6 0.0 2.0 1 1 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain zinc_ribbon_2 PF13240.1 gi|452207662|ref|YP_007487784.1| - 3.1e-06 26.4 4.1 6e-06 25.5 2.9 1.4 1 0 0 1 1 1 1 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|452207662|ref|YP_007487784.1| - 1.1e-05 24.4 4.3 1.9e-05 23.6 3.0 1.4 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|452207662|ref|YP_007487784.1| - 1.3e-05 24.9 1.3 2.8e-05 23.8 0.9 1.5 1 0 0 1 1 1 1 Double zinc ribbon EI24 PF07264.6 gi|452207662|ref|YP_007487784.1| - 0.022 14.2 2.8 2.2 7.6 0.0 2.3 2 0 0 2 2 2 0 Etoposide-induced protein 2.4 (EI24) UPF0547 PF10571.4 gi|452207662|ref|YP_007487784.1| - 0.03 14.0 2.2 0.052 13.2 1.5 1.4 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 Prok-RING_1 PF14446.1 gi|452207662|ref|YP_007487784.1| - 0.23 11.1 2.3 0.43 10.3 1.6 1.3 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 A2L_zn_ribbon PF08792.5 gi|452207662|ref|YP_007487784.1| - 0.72 9.3 3.7 4.2 6.9 2.5 2.1 1 1 0 1 1 1 0 A2L zinc ribbon domain MtrB PF05440.7 gi|452207662|ref|YP_007487784.1| - 1.3 9.1 4.7 3.3 7.8 0.1 3.5 4 0 0 4 4 4 0 Tetrahydromethanopterin S-methyltransferase subunit B Tubulin PF00091.20 gi|452207663|ref|YP_007487785.1| - 1.9e-12 47.4 0.0 3.3e-11 43.4 0.0 2.2 1 1 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain Tubulin_2 PF13809.1 gi|452207663|ref|YP_007487785.1| - 0.0012 17.8 0.0 0.0029 16.6 0.0 1.5 1 1 0 1 1 1 1 Tubulin like Flagellin_C PF00700.16 gi|452207664|ref|YP_007487786.1| - 0.02 15.0 2.7 0.16 12.1 1.8 2.2 1 1 0 1 1 1 0 Bacterial flagellin C-terminal helical region RPA_interact_M PF14767.1 gi|452207664|ref|YP_007487786.1| - 0.091 13.5 0.5 0.18 12.5 0.3 1.4 1 0 0 1 1 1 0 Replication protein A interacting middle V_ATPase_I PF01496.14 gi|452207664|ref|YP_007487786.1| - 0.89 7.3 4.2 0.18 9.6 0.7 1.4 2 0 0 2 2 2 0 V-type ATPase 116kDa subunit family IncA PF04156.9 gi|452207665|ref|YP_007487787.1| - 0.00012 21.7 1.7 0.00012 21.7 1.2 3.3 2 2 0 2 2 2 1 IncA protein AP_endonuc_2 PF01261.19 gi|452207665|ref|YP_007487787.1| - 0.027 13.7 1.3 0.38 10.0 0.1 3.1 1 1 2 3 3 3 0 Xylose isomerase-like TIM barrel DUF2422 PF10337.4 gi|452207665|ref|YP_007487787.1| - 0.11 11.2 0.3 0.19 10.5 0.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2422) DUF3007 PF11460.3 gi|452207665|ref|YP_007487787.1| - 0.19 11.8 1.5 0.49 10.4 0.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3007) Occludin_ELL PF07303.8 gi|452207665|ref|YP_007487787.1| - 0.66 10.7 3.8 15 6.3 0.2 3.3 3 0 0 3 3 3 0 Occludin homology domain Tubulin PF00091.20 gi|452207666|ref|YP_007487788.1| - 2.3e-09 37.3 0.0 6.3e-09 35.9 0.0 1.7 1 1 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain Tetraspannin PF00335.15 gi|452207667|ref|YP_007487789.1| - 0.02 14.1 0.2 0.042 13.1 0.1 1.5 1 0 0 1 1 1 0 Tetraspanin family Fib_alpha PF08702.5 gi|452207668|ref|YP_007487790.1| - 0.018 15.1 2.2 0.021 14.9 0.1 2.1 3 0 0 3 3 3 0 Fibrinogen alpha/beta chain family ApoO PF09769.4 gi|452207668|ref|YP_007487790.1| - 0.047 13.3 2.3 0.19 11.4 0.1 2.4 2 0 0 2 2 2 0 Apolipoprotein O Filament PF00038.16 gi|452207668|ref|YP_007487790.1| - 0.16 11.4 13.9 0.19 11.1 8.0 1.9 1 1 1 2 2 2 0 Intermediate filament protein Fez1 PF06818.10 gi|452207668|ref|YP_007487790.1| - 0.26 11.2 11.9 0.41 10.6 8.2 1.5 1 1 0 1 1 1 0 Fez1 Syntaxin-6_N PF09177.6 gi|452207668|ref|YP_007487790.1| - 1.4 9.3 8.4 2.1 8.8 0.3 3.2 2 1 1 3 3 3 0 Syntaxin 6, N-terminal Cytochrom_C_2 PF01322.15 gi|452207668|ref|YP_007487790.1| - 2 8.9 6.2 0.8 10.2 0.6 2.4 1 1 0 2 2 2 0 Cytochrome C' DUF1451 PF07295.6 gi|452207668|ref|YP_007487790.1| - 2.1 8.1 7.8 0.39 10.4 1.8 2.1 1 1 0 2 2 2 0 Protein of unknown function (DUF1451) LEA_2 PF03168.8 gi|452207669|ref|YP_007487791.1| - 0.00015 22.0 0.5 1.5 9.2 0.0 3.8 3 0 0 3 3 3 2 Late embryogenesis abundant protein DUF1034 PF06280.7 gi|452207669|ref|YP_007487791.1| - 0.0004 20.7 0.9 0.09 13.1 0.0 4.0 2 2 2 4 4 4 1 Fn3-like domain (DUF1034) Fn3-like PF14310.1 gi|452207669|ref|YP_007487791.1| - 0.051 13.5 0.1 6.8 6.7 0.0 3.8 3 0 0 3 3 3 0 Fibronectin type III-like domain Calx-beta PF03160.9 gi|452207669|ref|YP_007487791.1| - 0.31 11.0 4.8 2.9 7.8 0.1 3.6 3 0 0 3 3 3 0 Calx-beta domain PQQ_2 PF13360.1 gi|452207670|ref|YP_007487792.1| - 6.3e-10 38.9 0.2 0.00021 20.8 0.0 2.8 2 0 0 2 2 2 2 PQQ-like domain PQQ PF01011.16 gi|452207670|ref|YP_007487792.1| - 0.0028 17.1 0.0 0.02 14.4 0.0 2.5 2 0 0 2 2 2 1 PQQ enzyme repeat Alpha_adaptinC2 PF02883.15 gi|452207670|ref|YP_007487792.1| - 0.0085 16.4 0.0 0.63 10.3 0.0 2.7 2 0 0 2 2 2 1 Adaptin C-terminal domain PQQ_3 PF13570.1 gi|452207670|ref|YP_007487792.1| - 0.02 15.1 1.7 43 4.5 0.0 4.9 4 1 0 4 4 4 0 PQQ-like domain AAA PF00004.24 gi|452207671|ref|YP_007487793.1| - 7.1e-33 113.6 0.0 1.3e-32 112.7 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|452207671|ref|YP_007487793.1| - 0.00012 22.2 0.1 0.00073 19.6 0.0 2.2 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|452207671|ref|YP_007487793.1| - 0.00026 21.0 0.0 0.0006 19.8 0.0 1.8 1 1 0 1 1 1 1 AAA ATPase domain IstB_IS21 PF01695.12 gi|452207671|ref|YP_007487793.1| - 0.00045 19.6 0.0 0.00088 18.7 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_33 PF13671.1 gi|452207671|ref|YP_007487793.1| - 0.003 17.4 0.0 0.009 15.8 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_5 PF07728.9 gi|452207671|ref|YP_007487793.1| - 0.0055 16.4 0.0 0.016 14.8 0.0 1.9 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_2 PF07724.9 gi|452207671|ref|YP_007487793.1| - 0.0063 16.4 0.1 0.018 14.9 0.0 1.8 2 0 0 2 2 1 1 AAA domain (Cdc48 subfamily) RNA_helicase PF00910.17 gi|452207671|ref|YP_007487793.1| - 0.0071 16.5 0.0 0.017 15.2 0.0 1.6 1 0 0 1 1 1 1 RNA helicase AAA_19 PF13245.1 gi|452207671|ref|YP_007487793.1| - 0.0094 15.6 0.0 0.024 14.3 0.0 1.6 1 0 0 1 1 1 1 Part of AAA domain Mg_chelatase PF01078.16 gi|452207671|ref|YP_007487793.1| - 0.012 14.7 0.0 0.025 13.7 0.0 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_14 PF13173.1 gi|452207671|ref|YP_007487793.1| - 0.018 14.9 0.0 0.041 13.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|452207671|ref|YP_007487793.1| - 0.02 15.1 0.0 0.042 14.1 0.0 1.6 1 0 0 1 1 1 0 ABC transporter RuvB_N PF05496.7 gi|452207671|ref|YP_007487793.1| - 0.024 13.6 0.0 0.056 12.4 0.0 1.5 1 0 0 1 1 1 0 Holliday junction DNA helicase ruvB N-terminus AAA_17 PF13207.1 gi|452207671|ref|YP_007487793.1| - 0.029 15.1 0.0 0.091 13.5 0.0 1.9 1 0 0 1 1 1 0 AAA domain Sigma54_activat PF00158.21 gi|452207671|ref|YP_007487793.1| - 0.038 13.4 0.0 0.18 11.2 0.0 2.0 1 1 0 1 1 1 0 Sigma-54 interaction domain AAA_25 PF13481.1 gi|452207671|ref|YP_007487793.1| - 0.044 13.1 0.0 0.51 9.7 0.0 2.3 1 1 1 2 2 2 0 AAA domain Arch_ATPase PF01637.13 gi|452207671|ref|YP_007487793.1| - 0.075 12.7 0.2 1.3 8.7 0.1 2.3 1 1 0 1 1 1 0 Archaeal ATPase Zeta_toxin PF06414.7 gi|452207671|ref|YP_007487793.1| - 0.11 11.5 0.0 0.54 9.3 0.0 1.9 2 0 0 2 2 2 0 Zeta toxin Laminin_II PF06009.7 gi|452207673|ref|YP_007487795.1| - 0.0017 18.1 7.7 0.035 13.8 0.0 3.1 2 1 1 3 3 3 2 Laminin Domain II Lipoprotein_7 PF01540.11 gi|452207673|ref|YP_007487795.1| - 0.018 14.1 4.0 0.047 12.7 2.2 1.9 1 1 1 2 2 2 0 Adhesin lipoprotein DUF1664 PF07889.7 gi|452207673|ref|YP_007487795.1| - 0.031 14.0 4.1 0.92 9.3 0.0 2.8 2 1 1 3 3 3 0 Protein of unknown function (DUF1664) Syntaxin PF00804.20 gi|452207673|ref|YP_007487795.1| - 0.064 13.4 10.2 2.3 8.4 4.8 3.2 1 1 1 2 2 2 0 Syntaxin GCN5L1 PF06320.8 gi|452207673|ref|YP_007487795.1| - 0.077 12.8 4.3 4.3 7.1 1.1 2.6 2 0 0 2 2 2 0 GCN5-like protein 1 (GCN5L1) Spc7 PF08317.6 gi|452207673|ref|YP_007487795.1| - 0.72 8.4 10.4 0.62 8.6 4.7 2.1 1 1 1 2 2 2 0 Spc7 kinetochore protein Prominin PF05478.6 gi|452207673|ref|YP_007487795.1| - 0.97 6.8 2.7 1.1 6.6 1.1 1.6 2 0 0 2 2 2 0 Prominin IncA PF04156.9 gi|452207673|ref|YP_007487795.1| - 1.4 8.4 13.2 0.28 10.7 5.8 2.0 1 1 1 2 2 2 0 IncA protein UPF0449 PF15136.1 gi|452207673|ref|YP_007487795.1| - 4.9 7.4 6.6 36 4.6 0.7 3.0 3 0 0 3 3 3 0 Uncharacterised protein family UPF0449 AAA_32 PF13654.1 gi|452207674|ref|YP_007487796.1| - 0.039 12.6 6.0 0.057 12.0 4.1 1.2 1 0 0 1 1 1 0 AAA domain MarR PF01047.17 gi|452207674|ref|YP_007487796.1| - 0.078 12.6 0.1 19 5.0 0.0 2.6 2 0 0 2 2 2 0 MarR family YodL PF14191.1 gi|452207674|ref|YP_007487796.1| - 0.079 13.4 0.1 0.32 11.5 0.0 2.1 2 0 0 2 2 2 0 YodL-like RHH_1 PF01402.16 gi|452207675|ref|YP_007487797.1| - 0.002 17.9 2.6 0.006 16.4 0.6 2.4 2 1 0 2 2 2 1 Ribbon-helix-helix protein, copG family DUF1548 PF07579.6 gi|452207675|ref|YP_007487797.1| - 0.057 13.5 0.0 0.06 13.4 0.0 1.2 1 0 0 1 1 1 0 Domain of Unknown Function (DUF1548) TilS PF09179.6 gi|452207675|ref|YP_007487797.1| - 0.15 12.1 0.1 0.26 11.3 0.0 1.5 1 1 1 2 2 2 0 TilS substrate binding domain UbiA PF01040.13 gi|452207676|ref|YP_007487798.1| - 1.3e-39 136.0 25.0 2e-39 135.4 17.4 1.2 1 0 0 1 1 1 1 UbiA prenyltransferase family CoA_binding_2 PF13380.1 gi|452207677|ref|YP_007487799.1| - 4.7e-33 113.8 0.1 5.5e-33 113.5 0.1 1.1 1 0 0 1 1 1 1 CoA binding domain CoA_binding PF02629.14 gi|452207677|ref|YP_007487799.1| - 1.9e-06 28.3 0.0 2.6e-06 27.8 0.0 1.2 1 0 0 1 1 1 1 CoA binding domain TusA PF01206.12 gi|452207677|ref|YP_007487799.1| - 0.048 13.2 0.0 0.14 11.7 0.0 1.7 2 0 0 2 2 2 0 Sulfurtransferase TusA NPV_P10 PF05531.7 gi|452207678|ref|YP_007487800.1| - 0.0053 16.9 0.6 0.0078 16.4 0.4 1.4 1 1 0 1 1 1 1 Nucleopolyhedrovirus P10 protein ATP-synt_D PF01813.12 gi|452207678|ref|YP_007487800.1| - 0.0057 16.2 0.3 0.0084 15.6 0.2 1.2 1 0 0 1 1 1 1 ATP synthase subunit D FliD_C PF07195.7 gi|452207678|ref|YP_007487800.1| - 0.011 15.0 0.3 0.015 14.5 0.2 1.1 1 0 0 1 1 1 0 Flagellar hook-associated protein 2 C-terminus BLOC1_2 PF10046.4 gi|452207678|ref|YP_007487800.1| - 0.017 15.2 0.1 0.023 14.8 0.1 1.2 1 0 0 1 1 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 HR1 PF02185.11 gi|452207678|ref|YP_007487800.1| - 0.017 14.8 0.7 0.032 13.9 0.3 1.6 1 1 1 2 2 2 0 Hr1 repeat DUF2240 PF09999.4 gi|452207678|ref|YP_007487800.1| - 0.019 14.3 0.3 0.027 13.8 0.2 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2240) Bacillus_HBL PF05791.6 gi|452207678|ref|YP_007487800.1| - 0.032 13.5 0.3 0.042 13.2 0.2 1.1 1 0 0 1 1 1 0 Bacillus haemolytic enterotoxin (HBL) Med9 PF07544.8 gi|452207678|ref|YP_007487800.1| - 0.047 13.4 1.1 0.07 12.8 0.8 1.3 1 0 0 1 1 1 0 RNA polymerase II transcription mediator complex subunit 9 Striatin PF08232.7 gi|452207678|ref|YP_007487800.1| - 0.06 13.6 0.0 0.064 13.5 0.0 1.2 1 0 0 1 1 1 0 Striatin family DUF1664 PF07889.7 gi|452207678|ref|YP_007487800.1| - 0.062 13.0 0.2 0.088 12.6 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) DUF2802 PF10975.3 gi|452207678|ref|YP_007487800.1| - 0.065 12.9 4.8 0.15 11.8 2.6 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2802) TMF_DNA_bd PF12329.3 gi|452207678|ref|YP_007487800.1| - 0.069 12.9 2.9 0.093 12.5 1.8 1.4 1 1 0 1 1 1 0 TATA element modulatory factor 1 DNA binding RmuC PF02646.11 gi|452207678|ref|YP_007487800.1| - 0.086 11.6 0.5 0.1 11.4 0.4 1.0 1 0 0 1 1 1 0 RmuC family Atg14 PF10186.4 gi|452207678|ref|YP_007487800.1| - 0.089 11.7 0.6 0.1 11.5 0.4 1.0 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 Lzipper-MIP1 PF14389.1 gi|452207678|ref|YP_007487800.1| - 0.091 12.8 2.7 0.12 12.4 1.9 1.2 1 0 0 1 1 1 0 Leucine-zipper of ternary complex factor MIP1 COG2 PF06148.6 gi|452207678|ref|YP_007487800.1| - 0.1 12.4 0.6 0.12 12.2 0.4 1.1 1 0 0 1 1 1 0 COG (conserved oligomeric Golgi) complex component, COG2 Flu_NS2 PF00601.14 gi|452207678|ref|YP_007487800.1| - 0.13 12.5 0.1 0.15 12.2 0.0 1.2 1 0 0 1 1 1 0 Influenza non-structural protein (NS2) HTH_19 PF12844.2 gi|452207678|ref|YP_007487800.1| - 0.15 12.1 0.3 0.24 11.4 0.2 1.4 1 1 0 1 1 1 0 Helix-turn-helix domain EMP24_GP25L PF01105.19 gi|452207678|ref|YP_007487800.1| - 0.15 11.7 0.3 0.19 11.4 0.2 1.1 1 0 0 1 1 1 0 emp24/gp25L/p24 family/GOLD RHH_1 PF01402.16 gi|452207678|ref|YP_007487800.1| - 0.17 11.8 1.2 1.2 9.1 0.3 2.2 2 0 0 2 2 2 0 Ribbon-helix-helix protein, copG family GP41 PF00517.12 gi|452207678|ref|YP_007487800.1| - 0.18 11.3 0.3 0.22 11.0 0.2 1.1 1 0 0 1 1 1 0 Retroviral envelope protein DivIVA PF05103.8 gi|452207678|ref|YP_007487800.1| - 0.24 11.4 2.8 0.4 10.7 2.0 1.4 1 1 0 1 1 1 0 DivIVA protein SlyX PF04102.7 gi|452207678|ref|YP_007487800.1| - 1.4 9.3 5.0 3.1 8.2 3.5 1.6 1 1 0 1 1 1 0 SlyX BPL_LplA_LipB PF03099.14 gi|452207679|ref|YP_007487801.1| - 0.00024 21.1 0.0 0.00035 20.5 0.0 1.2 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family Response_reg PF00072.19 gi|452207681|ref|YP_007487803.1| - 1.8e-20 73.0 0.4 3.8e-20 71.9 0.1 1.7 2 0 0 2 2 2 1 Response regulator receiver domain HalX PF08663.5 gi|452207681|ref|YP_007487803.1| - 9e-12 44.8 6.1 1.8e-11 43.8 4.3 1.4 1 0 0 1 1 1 1 HalX domain Methyltransf_24 PF13578.1 gi|452207681|ref|YP_007487803.1| - 0.25 12.2 1.0 13 6.6 0.0 2.3 1 1 1 2 2 2 0 Methyltransferase domain HTH_10 PF04967.7 gi|452207682|ref|YP_007487804.1| - 1e-18 66.6 0.0 2.4e-18 65.4 0.0 1.7 1 0 0 1 1 1 1 HTH DNA binding domain Response_reg PF00072.19 gi|452207682|ref|YP_007487804.1| - 9.8e-17 60.9 0.0 3.2e-16 59.3 0.0 2.0 2 0 0 2 2 2 1 Response regulator receiver domain GAF_2 PF13185.1 gi|452207682|ref|YP_007487804.1| - 3e-14 53.7 0.3 1.9e-10 41.3 0.0 3.3 2 0 0 2 2 2 2 GAF domain HalX PF08663.5 gi|452207682|ref|YP_007487804.1| - 2.4e-13 49.8 6.9 2.4e-13 49.8 4.8 5.0 5 1 1 6 6 6 1 HalX domain GAF_3 PF13492.1 gi|452207682|ref|YP_007487804.1| - 6.9e-13 48.8 0.1 1.7e-05 24.8 0.0 3.2 3 0 0 3 3 3 2 GAF domain PAS PF00989.19 gi|452207682|ref|YP_007487804.1| - 1e-08 34.9 0.2 6e-08 32.4 0.0 2.4 2 0 0 2 2 2 1 PAS fold PAS_8 PF13188.1 gi|452207682|ref|YP_007487804.1| - 7.7e-08 31.9 0.0 6e-07 29.0 0.0 2.5 2 0 0 2 2 2 1 PAS domain PAS_4 PF08448.5 gi|452207682|ref|YP_007487804.1| - 1.9e-07 31.1 0.4 1.9e-07 31.1 0.3 3.1 4 0 0 4 4 4 1 PAS fold PAS_9 PF13426.1 gi|452207682|ref|YP_007487804.1| - 2e-07 31.3 0.1 8.2e-07 29.3 0.0 2.2 2 0 0 2 2 2 1 PAS domain PAS_7 PF12860.2 gi|452207682|ref|YP_007487804.1| - 3.5e-07 30.2 0.1 3.5e-07 30.2 0.1 2.7 3 1 1 4 4 4 1 PAS fold GAF PF01590.21 gi|452207682|ref|YP_007487804.1| - 2.6e-05 24.3 0.3 0.00014 22.0 0.0 2.4 2 0 0 2 2 2 1 GAF domain OmpH PF03938.9 gi|452207682|ref|YP_007487804.1| - 3.3 7.6 13.0 0.13 12.2 1.2 2.9 3 0 0 3 3 3 0 Outer membrane protein (OmpH-like) PAS_9 PF13426.1 gi|452207683|ref|YP_007487805.1| - 2.7e-115 377.9 5.9 2.2e-25 89.0 0.0 9.4 9 0 0 9 9 9 9 PAS domain PAS_4 PF08448.5 gi|452207683|ref|YP_007487805.1| - 6.1e-80 264.4 26.5 3.2e-12 46.4 0.0 9.4 9 0 0 9 9 9 9 PAS fold PAS PF00989.19 gi|452207683|ref|YP_007487805.1| - 3.4e-68 226.5 7.5 6.3e-12 45.2 0.0 9.8 10 0 0 10 10 10 8 PAS fold PAS_3 PF08447.6 gi|452207683|ref|YP_007487805.1| - 5.1e-47 157.9 12.1 1.3e-11 44.4 0.0 8.6 8 0 0 8 8 8 5 PAS fold PAS_8 PF13188.1 gi|452207683|ref|YP_007487805.1| - 3.9e-36 121.7 6.4 1.3e-07 31.1 0.0 8.8 8 0 0 8 8 8 7 PAS domain HATPase_c PF02518.21 gi|452207683|ref|YP_007487805.1| - 4.2e-17 61.8 0.1 2.4e-16 59.4 0.0 2.3 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_11 PF14598.1 gi|452207683|ref|YP_007487805.1| - 1.2e-10 41.2 0.0 0.00085 19.2 0.0 6.0 7 0 0 7 7 7 2 PAS domain GAF_3 PF13492.1 gi|452207683|ref|YP_007487805.1| - 9.3e-10 38.6 0.2 3.9e-09 36.6 0.1 2.2 1 0 0 1 1 1 1 GAF domain HATPase_c_2 PF13581.1 gi|452207683|ref|YP_007487805.1| - 1.2e-09 38.0 1.0 4.3e-09 36.2 0.1 2.5 3 0 0 3 3 3 1 Histidine kinase-like ATPase domain GAF_2 PF13185.1 gi|452207683|ref|YP_007487805.1| - 1.8e-08 35.0 1.7 1.1e-07 32.4 0.1 3.2 3 1 1 4 4 3 1 GAF domain PAS_7 PF12860.2 gi|452207683|ref|YP_007487805.1| - 1e-06 28.7 6.4 1.1 9.2 0.0 7.9 9 1 0 9 9 8 2 PAS fold GAF PF01590.21 gi|452207683|ref|YP_007487805.1| - 1.1e-05 25.6 0.6 0.0014 18.7 0.0 3.4 3 0 0 3 3 3 1 GAF domain HATPase_c_3 PF13589.1 gi|452207683|ref|YP_007487805.1| - 0.00019 21.0 0.0 0.00046 19.8 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|452207683|ref|YP_007487805.1| - 0.00029 20.7 0.5 0.003 17.5 0.3 2.9 1 1 0 1 1 1 1 His Kinase A (phospho-acceptor) domain DUF615 PF04751.9 gi|452207683|ref|YP_007487805.1| - 0.0075 15.9 7.4 0.033 13.8 5.2 2.2 1 0 0 1 1 1 1 Protein of unknown function (DUF615) HTH_20 PF12840.2 gi|452207684|ref|YP_007487806.1| - 3.1e-05 23.6 0.2 0.00041 20.0 0.0 2.4 3 0 0 3 3 3 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|452207684|ref|YP_007487806.1| - 0.026 13.9 0.0 0.049 13.0 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_11 PF08279.7 gi|452207684|ref|YP_007487806.1| - 0.049 13.2 0.0 0.73 9.5 0.0 2.2 2 0 0 2 2 2 0 HTH domain PALP PF00291.20 gi|452207685|ref|YP_007487807.1| - 1.1e-55 189.0 1.6 1.3e-55 188.7 1.1 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme CBS PF00571.23 gi|452207685|ref|YP_007487807.1| - 0.015 15.0 0.0 0.036 13.8 0.0 1.6 1 0 0 1 1 1 0 CBS domain DZR PF12773.2 gi|452207685|ref|YP_007487807.1| - 0.027 14.2 1.1 0.056 13.2 0.8 1.4 1 0 0 1 1 1 0 Double zinc ribbon DUF1272 PF06906.6 gi|452207685|ref|YP_007487807.1| - 0.055 13.3 1.6 0.11 12.4 1.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1272) TF_Zn_Ribbon PF08271.7 gi|452207685|ref|YP_007487807.1| - 0.086 12.1 2.2 0.29 10.4 1.5 1.9 1 1 0 1 1 1 0 TFIIB zinc-binding Zn-ribbon_8 PF09723.5 gi|452207685|ref|YP_007487807.1| - 0.088 12.7 2.4 0.22 11.4 1.6 1.6 1 0 0 1 1 1 0 Zinc ribbon domain Prok-RING_1 PF14446.1 gi|452207685|ref|YP_007487807.1| - 0.13 11.9 0.8 0.23 11.2 0.6 1.4 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 zinc_ribbon_2 PF13240.1 gi|452207685|ref|YP_007487807.1| - 0.2 11.2 0.6 0.4 10.2 0.4 1.5 1 0 0 1 1 1 0 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|452207685|ref|YP_007487807.1| - 3 7.1 6.5 0.31 10.3 1.2 1.8 2 0 0 2 2 2 0 zinc-ribbon domain MCPsignal PF00015.16 gi|452207686|ref|YP_007487808.1| - 4.6e-34 117.8 54.1 1.3e-31 109.8 22.3 2.3 1 1 1 2 2 2 2 Methyl-accepting chemotaxis protein (MCP) signalling domain HDOD PF08668.7 gi|452207686|ref|YP_007487808.1| - 0.0094 15.2 2.9 0.023 13.9 2.0 1.6 1 0 0 1 1 1 1 HDOD domain DUF948 PF06103.6 gi|452207686|ref|YP_007487808.1| - 0.01 15.6 13.2 0.016 15.0 0.5 4.4 2 1 3 5 5 5 0 Bacterial protein of unknown function (DUF948) Laminin_I PF06008.9 gi|452207686|ref|YP_007487808.1| - 0.012 15.0 13.5 0.14 11.4 1.0 2.9 1 1 2 3 3 3 0 Laminin Domain I AAA_13 PF13166.1 gi|452207686|ref|YP_007487808.1| - 0.013 13.9 5.5 0.011 14.1 2.5 1.6 1 1 0 1 1 1 0 AAA domain FH2 PF02181.18 gi|452207686|ref|YP_007487808.1| - 0.13 11.0 4.6 0.4 9.4 0.2 2.2 1 1 1 2 2 2 0 Formin Homology 2 Domain IncA PF04156.9 gi|452207686|ref|YP_007487808.1| - 0.14 11.7 4.8 19 4.8 3.4 3.0 1 1 0 1 1 1 0 IncA protein Sec5 PF15469.1 gi|452207686|ref|YP_007487808.1| - 0.19 11.4 0.8 2.1 8.0 0.4 2.6 1 1 1 2 2 2 0 Exocyst complex component Sec5 BLOC1_2 PF10046.4 gi|452207686|ref|YP_007487808.1| - 0.21 11.7 8.2 5 7.3 0.1 4.3 3 2 1 4 4 4 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 NPV_P10 PF05531.7 gi|452207686|ref|YP_007487808.1| - 0.4 10.9 16.2 4.9 7.4 1.0 4.7 2 1 1 3 3 3 0 Nucleopolyhedrovirus P10 protein DUF812 PF05667.6 gi|452207686|ref|YP_007487808.1| - 0.45 8.9 15.1 0.21 10.0 1.2 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF812) Reo_sigmaC PF04582.7 gi|452207686|ref|YP_007487808.1| - 0.53 9.4 21.6 2.6 7.1 5.2 2.4 1 1 1 2 2 2 0 Reovirus sigma C capsid protein Syntaxin PF00804.20 gi|452207686|ref|YP_007487808.1| - 0.71 10.0 8.8 5.9 7.1 2.3 3.2 1 1 2 3 3 3 0 Syntaxin Spc7 PF08317.6 gi|452207686|ref|YP_007487808.1| - 0.88 8.1 4.4 2.1 6.9 0.4 2.3 1 1 1 2 2 2 0 Spc7 kinetochore protein DUF4200 PF13863.1 gi|452207686|ref|YP_007487808.1| - 0.89 9.5 5.1 15 5.5 0.0 3.3 2 2 1 3 3 3 0 Domain of unknown function (DUF4200) Uds1 PF15456.1 gi|452207686|ref|YP_007487808.1| - 1 9.3 9.0 3.2 7.7 1.5 2.9 2 1 0 2 2 2 0 Up-regulated During Septation DUF4559 PF15112.1 gi|452207686|ref|YP_007487808.1| - 1.2 8.1 2.9 4.1 6.4 1.0 2.1 1 1 2 3 3 3 0 Domain of unknown function (DUF4559) Syntaxin-6_N PF09177.6 gi|452207686|ref|YP_007487808.1| - 1.7 9.1 13.2 4.2 7.8 0.8 4.0 2 2 2 4 4 4 0 Syntaxin 6, N-terminal DUF1664 PF07889.7 gi|452207686|ref|YP_007487808.1| - 2.1 8.1 14.0 6.8 6.5 0.3 4.2 1 1 3 5 5 5 0 Protein of unknown function (DUF1664) Laminin_II PF06009.7 gi|452207686|ref|YP_007487808.1| - 2.3 7.9 20.0 2.4 7.8 1.3 4.2 1 1 3 4 4 4 0 Laminin Domain II HisKA PF00512.20 gi|452207686|ref|YP_007487808.1| - 3.5 7.6 16.5 2.4 8.2 0.6 4.8 4 1 0 4 4 4 0 His Kinase A (phospho-acceptor) domain TPR_MLP1_2 PF07926.7 gi|452207686|ref|YP_007487808.1| - 4.2 7.1 10.4 14 5.4 4.2 2.8 1 1 1 2 2 2 0 TPR/MLP1/MLP2-like protein DUF2580 PF10824.3 gi|452207686|ref|YP_007487808.1| - 4.3 7.7 43.0 0.62 10.4 0.8 5.3 2 2 2 4 4 4 0 Protein of unknown function (DUF2580) Flagellin_N PF00669.15 gi|452207686|ref|YP_007487808.1| - 5.2 6.8 20.1 4.5 7.0 5.2 3.3 2 2 1 3 3 3 0 Bacterial flagellin N-terminal helical region DUF3450 PF11932.3 gi|452207686|ref|YP_007487808.1| - 6.8 5.8 16.2 1.1 8.4 4.3 3.1 1 1 1 3 3 3 0 Protein of unknown function (DUF3450) SPW PF03779.9 gi|452207687|ref|YP_007487809.1| - 0.045 13.1 2.0 1.1 8.7 0.1 2.1 2 0 0 2 2 2 0 SPW repeat DUF2561 PF10812.3 gi|452207687|ref|YP_007487809.1| - 0.081 12.5 0.8 0.091 12.3 0.6 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2561) N_methyl_3 PF13633.1 gi|452207687|ref|YP_007487809.1| - 1.1 9.3 0.1 1.1 9.3 0.1 2.3 2 0 0 2 2 2 0 Prokaryotic N-terminal methylation site Amino_oxidase PF01593.19 gi|452207688|ref|YP_007487810.1| - 1.6e-34 119.7 4.5 6e-34 117.8 3.1 1.7 1 1 0 1 1 1 1 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.1 gi|452207688|ref|YP_007487810.1| - 1.3e-15 57.1 1.3 5.1e-15 55.2 0.6 2.1 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain DAO PF01266.19 gi|452207688|ref|YP_007487810.1| - 7.3e-11 41.5 10.6 7.8e-06 25.0 0.8 2.6 2 2 0 2 2 2 2 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|452207688|ref|YP_007487810.1| - 5.3e-07 28.4 0.2 1.6e-05 23.5 0.0 2.1 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox_2 PF07992.9 gi|452207688|ref|YP_007487810.1| - 2e-05 24.5 0.7 0.0007 19.5 0.3 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|452207688|ref|YP_007487810.1| - 5.6e-05 22.1 2.3 0.00035 19.5 0.3 2.1 2 0 0 2 2 2 1 Glucose inhibited division protein A Pyr_redox_3 PF13738.1 gi|452207688|ref|YP_007487810.1| - 0.00011 22.3 0.2 0.00031 20.8 0.0 1.7 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|452207688|ref|YP_007487810.1| - 0.00011 22.4 1.6 0.00075 19.8 1.0 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|452207688|ref|YP_007487810.1| - 0.00022 20.2 5.8 0.00027 19.9 2.1 2.2 2 0 0 2 2 2 1 FAD binding domain Thi4 PF01946.12 gi|452207688|ref|YP_007487810.1| - 0.00023 20.3 1.2 0.0011 18.1 0.2 2.0 2 0 0 2 2 2 1 Thi4 family FAD_oxidored PF12831.2 gi|452207688|ref|YP_007487810.1| - 0.00031 19.9 2.7 0.00051 19.2 1.9 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|452207688|ref|YP_007487810.1| - 0.0043 16.1 2.2 0.0043 16.1 1.5 1.6 2 0 0 2 2 2 1 FAD binding domain AlaDh_PNT_C PF01262.16 gi|452207688|ref|YP_007487810.1| - 0.0043 16.6 0.4 0.0085 15.6 0.3 1.5 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain NAD_Gly3P_dh_N PF01210.18 gi|452207688|ref|YP_007487810.1| - 0.011 15.4 1.0 3.8 7.2 0.1 2.3 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Trp_halogenase PF04820.9 gi|452207688|ref|YP_007487810.1| - 0.072 11.6 0.7 0.1 11.2 0.5 1.2 1 0 0 1 1 1 0 Tryptophan halogenase Lycopene_cycl PF05834.7 gi|452207688|ref|YP_007487810.1| - 0.095 11.6 0.2 0.15 10.9 0.2 1.3 1 0 0 1 1 1 0 Lycopene cyclase protein YjeF_N PF03853.10 gi|452207688|ref|YP_007487810.1| - 0.12 11.9 0.3 0.25 10.9 0.2 1.4 1 0 0 1 1 1 0 YjeF-related protein N-terminus Cupin_2 PF07883.6 gi|452207689|ref|YP_007487811.1| - 2e-09 36.8 1.6 3.2e-09 36.1 1.1 1.3 1 0 0 1 1 1 1 Cupin domain Cupin_3 PF05899.7 gi|452207689|ref|YP_007487811.1| - 4e-05 22.9 0.1 8.2e-05 21.9 0.0 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF861) DUF4437 PF14499.1 gi|452207689|ref|YP_007487811.1| - 0.00052 18.9 0.0 0.00058 18.8 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4437) Cupin_6 PF12852.2 gi|452207689|ref|YP_007487811.1| - 0.033 13.8 0.6 0.041 13.5 0.4 1.2 1 0 0 1 1 1 0 Cupin Metallophos PF00149.23 gi|452207690|ref|YP_007487812.1| - 3.9e-07 29.6 1.2 3.4e-06 26.5 0.8 2.1 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.2 gi|452207690|ref|YP_007487812.1| - 0.00025 20.9 0.0 0.00034 20.4 0.0 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain DUF3463 PF11946.3 gi|452207690|ref|YP_007487812.1| - 0.13 11.8 0.0 0.25 10.9 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3463) MarR_2 PF12802.2 gi|452207691|ref|YP_007487813.1| - 1.3e-09 37.6 0.2 4.3e-09 35.9 0.0 2.0 2 0 0 2 2 2 1 MarR family MarR PF01047.17 gi|452207691|ref|YP_007487813.1| - 5e-09 35.7 0.0 1.3e-08 34.4 0.0 1.7 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|452207691|ref|YP_007487813.1| - 1.2e-08 34.2 0.0 1.9e-08 33.5 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.1 gi|452207691|ref|YP_007487813.1| - 1.4e-07 31.7 0.0 3.1e-06 27.4 0.0 2.5 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_45 PF14947.1 gi|452207691|ref|YP_007487813.1| - 1.9e-05 24.3 0.0 2.8e-05 23.8 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_Crp_2 PF13545.1 gi|452207691|ref|YP_007487813.1| - 6.3e-05 22.6 0.0 0.00015 21.4 0.0 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain TrmB PF01978.14 gi|452207691|ref|YP_007487813.1| - 0.00011 21.8 0.1 0.00022 20.8 0.1 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB DUF4423 PF14394.1 gi|452207691|ref|YP_007487813.1| - 0.00043 19.8 0.0 0.00064 19.3 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) HTH_IclR PF09339.5 gi|452207691|ref|YP_007487813.1| - 0.0022 17.5 0.0 0.0057 16.2 0.0 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_20 PF12840.2 gi|452207691|ref|YP_007487813.1| - 0.0026 17.5 0.0 0.0058 16.4 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|452207691|ref|YP_007487813.1| - 0.0038 16.8 0.0 0.0064 16.1 0.0 1.4 1 0 0 1 1 1 1 HTH domain DUF387 PF04079.11 gi|452207691|ref|YP_007487813.1| - 0.0079 15.5 0.1 0.013 14.8 0.0 1.3 1 0 0 1 1 1 1 Putative transcriptional regulators (Ypuh-like) Rrf2 PF02082.15 gi|452207691|ref|YP_007487813.1| - 0.0081 16.2 0.0 0.032 14.3 0.0 2.0 2 0 0 2 2 1 1 Transcriptional regulator Fe_dep_repress PF01325.14 gi|452207691|ref|YP_007487813.1| - 0.011 15.6 0.1 0.038 13.9 0.0 1.9 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain HTH_5 PF01022.15 gi|452207691|ref|YP_007487813.1| - 0.011 15.3 0.0 0.026 14.1 0.0 1.6 2 0 0 2 2 1 0 Bacterial regulatory protein, arsR family NMD3 PF04981.8 gi|452207691|ref|YP_007487813.1| - 0.03 13.4 0.0 0.04 13.0 0.0 1.2 1 0 0 1 1 1 0 NMD3 family HTH_13 PF11972.3 gi|452207691|ref|YP_007487813.1| - 0.031 14.1 0.0 0.14 12.0 0.0 2.1 1 1 1 2 2 2 0 HTH DNA binding domain Rio2_N PF09202.6 gi|452207691|ref|YP_007487813.1| - 0.047 13.7 0.0 0.079 13.0 0.0 1.3 1 0 0 1 1 1 0 Rio2, N-terminal HTH_36 PF13730.1 gi|452207691|ref|YP_007487813.1| - 0.054 13.6 0.0 0.081 13.0 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain Mnd1 PF03962.10 gi|452207691|ref|YP_007487813.1| - 0.072 12.7 0.0 0.12 12.0 0.0 1.2 1 0 0 1 1 1 0 Mnd1 family FaeA PF04703.7 gi|452207691|ref|YP_007487813.1| - 0.093 12.8 0.0 0.28 11.3 0.0 1.8 1 0 0 1 1 1 0 FaeA-like protein DUF4364 PF14277.1 gi|452207691|ref|YP_007487813.1| - 0.1 12.2 0.0 0.14 11.7 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) DapB_C PF05173.9 gi|452207692|ref|YP_007487814.1| - 4.7e-37 126.7 0.0 7.4e-37 126.0 0.0 1.3 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, C-terminus DapB_N PF01113.15 gi|452207692|ref|YP_007487814.1| - 1.6e-22 79.7 0.5 3.5e-22 78.6 0.3 1.6 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus NAD_binding_10 PF13460.1 gi|452207692|ref|YP_007487814.1| - 1e-10 41.9 3.8 1.3e-10 41.5 1.4 1.9 2 0 0 2 2 2 1 NADH(P)-binding CoA_binding_2 PF13380.1 gi|452207692|ref|YP_007487814.1| - 1.1e-05 25.5 0.4 1.8e-05 24.9 0.3 1.4 1 0 0 1 1 1 1 CoA binding domain Semialdhyde_dh PF01118.19 gi|452207692|ref|YP_007487814.1| - 0.0067 16.7 1.9 0.33 11.2 1.2 2.4 1 1 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain NAD_binding_3 PF03447.11 gi|452207692|ref|YP_007487814.1| - 0.0075 16.6 0.1 0.017 15.5 0.1 1.7 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|452207692|ref|YP_007487814.1| - 0.0099 15.0 0.4 0.022 13.9 0.0 1.7 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Epimerase PF01370.16 gi|452207692|ref|YP_007487814.1| - 0.01 15.2 0.1 0.032 13.6 0.0 1.8 2 0 0 2 2 2 0 NAD dependent epimerase/dehydratase family CoA_binding PF02629.14 gi|452207692|ref|YP_007487814.1| - 0.012 16.1 0.3 0.024 15.1 0.2 1.6 1 0 0 1 1 1 0 CoA binding domain TrkA_N PF02254.13 gi|452207692|ref|YP_007487814.1| - 0.014 15.4 0.6 0.079 12.9 0.0 2.3 2 0 0 2 2 2 0 TrkA-N domain Ifi-6-16 PF06140.8 gi|452207692|ref|YP_007487814.1| - 0.029 14.1 0.8 0.029 14.1 0.5 2.0 2 0 0 2 2 2 0 Interferon-induced 6-16 family RmlD_sub_bind PF04321.12 gi|452207692|ref|YP_007487814.1| - 0.049 12.5 0.1 0.07 12.0 0.0 1.3 1 0 0 1 1 1 0 RmlD substrate binding domain DFP PF04127.10 gi|452207692|ref|YP_007487814.1| - 0.1 12.1 0.1 0.37 10.3 0.0 1.8 2 0 0 2 2 2 0 DNA / pantothenate metabolism flavoprotein NmrA PF05368.8 gi|452207692|ref|YP_007487814.1| - 0.26 10.5 1.2 0.32 10.2 0.8 1.4 1 1 0 1 1 1 0 NmrA-like family DHDPS PF00701.17 gi|452207693|ref|YP_007487815.1| - 2.3e-91 305.3 0.0 2.6e-91 305.2 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family NMO PF03060.10 gi|452207693|ref|YP_007487815.1| - 0.00037 19.7 3.0 0.00041 19.6 1.4 1.4 1 1 0 1 1 1 1 Nitronate monooxygenase PEP_mutase PF13714.1 gi|452207693|ref|YP_007487815.1| - 0.0022 17.2 0.5 0.0038 16.4 0.3 1.4 1 0 0 1 1 1 1 Phosphoenolpyruvate phosphomutase ThiG PF05690.9 gi|452207693|ref|YP_007487815.1| - 0.0048 16.0 0.3 0.0076 15.3 0.2 1.3 1 0 0 1 1 1 1 Thiazole biosynthesis protein ThiG PA PF02225.17 gi|452207693|ref|YP_007487815.1| - 0.1 12.2 0.1 0.3 10.7 0.0 1.8 1 1 1 2 2 2 0 PA domain TrkA_N PF02254.13 gi|452207694|ref|YP_007487816.1| - 3.8e-23 81.7 0.2 4.5e-23 81.4 0.1 1.1 1 0 0 1 1 1 1 TrkA-N domain NAD_binding_7 PF13241.1 gi|452207694|ref|YP_007487816.1| - 7.2e-06 26.1 0.0 1.1e-05 25.6 0.0 1.2 1 0 0 1 1 1 1 Putative NAD(P)-binding Saccharop_dh PF03435.13 gi|452207694|ref|YP_007487816.1| - 0.0031 16.5 0.1 0.0054 15.7 0.0 1.4 1 1 1 2 2 2 1 Saccharopine dehydrogenase NAD_binding_10 PF13460.1 gi|452207694|ref|YP_007487816.1| - 0.0034 17.3 0.1 0.0041 17.1 0.1 1.1 1 0 0 1 1 1 1 NADH(P)-binding DAO PF01266.19 gi|452207694|ref|YP_007487816.1| - 0.0037 16.2 0.0 0.0037 16.2 0.0 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox PF00070.22 gi|452207694|ref|YP_007487816.1| - 0.004 17.5 0.0 0.0084 16.4 0.0 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.9 gi|452207694|ref|YP_007487816.1| - 0.018 14.9 0.0 0.021 14.7 0.0 1.3 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase ApbA PF02558.11 gi|452207694|ref|YP_007487816.1| - 0.026 13.9 0.0 0.035 13.5 0.0 1.4 1 1 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Shikimate_DH PF01488.15 gi|452207694|ref|YP_007487816.1| - 0.033 14.2 0.0 0.049 13.7 0.0 1.2 1 1 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase NAD_Gly3P_dh_N PF01210.18 gi|452207694|ref|YP_007487816.1| - 0.034 13.8 0.1 0.22 11.2 0.0 2.1 1 1 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_2 PF03446.10 gi|452207694|ref|YP_007487816.1| - 0.035 13.9 0.0 0.043 13.6 0.0 1.2 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase 3HCDH_N PF02737.13 gi|452207694|ref|YP_007487816.1| - 0.052 13.2 0.0 0.099 12.2 0.0 1.7 1 1 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.9 gi|452207694|ref|YP_007487816.1| - 0.056 12.8 0.0 0.078 12.3 0.0 1.3 1 1 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain RepC PF06504.6 gi|452207694|ref|YP_007487816.1| - 0.1 11.5 0.0 0.11 11.4 0.0 1.1 1 0 0 1 1 1 0 Replication protein C (RepC) NurA PF09376.5 gi|452207697|ref|YP_007487819.1| - 1.1e-31 110.1 0.0 1.4e-31 109.8 0.0 1.1 1 0 0 1 1 1 1 NurA domain Iso_dh PF00180.15 gi|452207698|ref|YP_007487820.1| - 5.6e-105 351.1 0.0 7.2e-105 350.7 0.0 1.1 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase ProRS-C_1 PF09180.6 gi|452207699|ref|YP_007487821.1| - 8e-18 64.1 0.1 2e-17 62.8 0.1 1.7 1 0 0 1 1 1 1 Prolyl-tRNA synthetase, C-terminal HGTP_anticodon PF03129.15 gi|452207699|ref|YP_007487821.1| - 1.6e-16 60.0 0.0 2.9e-16 59.1 0.0 1.4 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2b PF00587.20 gi|452207699|ref|YP_007487821.1| - 3.3e-15 56.1 0.1 5.3e-15 55.4 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) PAPS_reduct PF01507.14 gi|452207700|ref|YP_007487822.1| - 2.2e-18 66.6 0.0 6.8e-15 55.3 0.0 3.1 2 1 0 2 2 2 2 Phosphoadenosine phosphosulfate reductase family ATP_bind_4 PF01902.12 gi|452207700|ref|YP_007487822.1| - 0.018 14.3 0.0 0.046 13.0 0.0 1.6 2 0 0 2 2 2 0 ATP-binding region TrmB PF01978.14 gi|452207702|ref|YP_007487824.1| - 0.0019 17.8 0.0 0.0028 17.3 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.15 gi|452207702|ref|YP_007487824.1| - 0.0075 16.3 0.1 0.019 15.0 0.0 1.6 2 0 0 2 2 2 1 Transcriptional regulator HTH_IclR PF09339.5 gi|452207702|ref|YP_007487824.1| - 0.0099 15.4 0.8 0.045 13.3 0.0 2.1 2 0 0 2 2 2 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|452207702|ref|YP_007487824.1| - 0.013 15.1 0.1 0.043 13.4 0.0 1.9 1 0 0 1 1 1 0 MarR family DUF2868 PF11067.3 gi|452207702|ref|YP_007487824.1| - 0.11 11.5 0.3 0.14 11.2 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2868) zf-CCHC_5 PF14787.1 gi|452207702|ref|YP_007487824.1| - 0.21 11.0 2.5 0.79 9.2 1.0 2.1 2 0 0 2 2 2 0 GAG-polyprotein viral zinc-finger Glu_synthase PF01645.12 gi|452207703|ref|YP_007487825.1| - 2.3e-154 513.7 0.1 1.6e-151 504.4 0.0 2.3 2 0 0 2 2 2 2 Conserved region in glutamate synthase GATase_2 PF00310.16 gi|452207703|ref|YP_007487825.1| - 4e-125 417.2 0.0 1.4e-124 415.4 0.0 1.9 2 0 0 2 2 2 1 Glutamine amidotransferases class-II Glu_syn_central PF04898.9 gi|452207703|ref|YP_007487825.1| - 2.1e-100 335.6 0.0 4.1e-100 334.7 0.0 1.5 1 0 0 1 1 1 1 Glutamate synthase central domain GXGXG PF01493.14 gi|452207703|ref|YP_007487825.1| - 1.6e-57 193.8 7.4 2.7e-57 193.0 5.1 1.3 1 0 0 1 1 1 1 GXGXG motif SpoVR PF04293.8 gi|452207703|ref|YP_007487825.1| - 0.015 13.6 0.1 0.027 12.8 0.0 1.3 1 0 0 1 1 1 0 SpoVR like protein FMN_dh PF01070.13 gi|452207703|ref|YP_007487825.1| - 0.049 12.4 6.3 0.038 12.8 1.3 2.6 3 0 0 3 3 3 0 FMN-dependent dehydrogenase GCV_H PF01597.14 gi|452207704|ref|YP_007487826.1| - 8.8e-37 125.4 0.0 9.7e-37 125.3 0.0 1.0 1 0 0 1 1 1 1 Glycine cleavage H-protein Biotin_lipoyl PF00364.17 gi|452207704|ref|YP_007487826.1| - 0.001 18.6 0.1 0.0015 18.1 0.0 1.3 1 0 0 1 1 1 1 Biotin-requiring enzyme RnfC_N PF13375.1 gi|452207704|ref|YP_007487826.1| - 0.074 12.7 0.0 0.11 12.2 0.0 1.2 1 0 0 1 1 1 0 RnfC Barrel sandwich hybrid domain NYN PF01936.13 gi|452207705|ref|YP_007487827.1| - 1.2e-22 80.7 0.0 1.3e-22 80.6 0.0 1.0 1 0 0 1 1 1 1 NYN domain Peripla_BP_4 PF13407.1 gi|452207705|ref|YP_007487827.1| - 0.00064 19.1 0.3 0.00072 18.9 0.2 1.1 1 0 0 1 1 1 1 Periplasmic binding protein domain CoA_binding_2 PF13380.1 gi|452207705|ref|YP_007487827.1| - 0.0053 16.9 0.8 0.014 15.5 0.5 1.7 1 1 1 2 2 2 1 CoA binding domain KR PF08659.5 gi|452207705|ref|YP_007487827.1| - 0.043 13.4 1.1 0.052 13.2 0.8 1.2 1 0 0 1 1 1 0 KR domain DUF4098 PF13345.1 gi|452207705|ref|YP_007487827.1| - 0.063 13.2 0.4 0.093 12.6 0.3 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4098) ADH_zinc_N PF00107.21 gi|452207705|ref|YP_007487827.1| - 0.13 11.8 0.9 0.72 9.4 0.6 2.0 1 1 0 1 1 1 0 Zinc-binding dehydrogenase Na_Ca_ex PF01699.19 gi|452207706|ref|YP_007487828.1| - 1.6e-35 121.7 26.6 8.3e-18 64.3 4.5 2.2 2 0 0 2 2 2 2 Sodium/calcium exchanger protein SBF PF01758.11 gi|452207706|ref|YP_007487828.1| - 0.0085 15.5 1.2 0.0085 15.5 0.8 2.6 2 1 0 2 2 2 1 Sodium Bile acid symporter family Methyltransf_23 PF13489.1 gi|452207707|ref|YP_007487829.1| - 2.2e-12 46.9 0.0 2.7e-12 46.7 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|452207707|ref|YP_007487829.1| - 5.9e-11 42.7 0.0 9.2e-11 42.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|452207707|ref|YP_007487829.1| - 6.8e-08 32.8 0.0 1.3e-07 31.9 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|452207707|ref|YP_007487829.1| - 1.4e-07 31.7 0.0 2.3e-07 31.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|452207707|ref|YP_007487829.1| - 6.3e-07 29.1 0.0 7.1e-07 28.9 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|452207707|ref|YP_007487829.1| - 9e-07 28.9 0.0 1.5e-06 28.2 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|452207707|ref|YP_007487829.1| - 1.2e-06 29.1 0.1 1.9e-06 28.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.7 gi|452207707|ref|YP_007487829.1| - 2.5e-06 27.0 0.0 3.5e-06 26.5 0.0 1.1 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW DUF938 PF06080.7 gi|452207707|ref|YP_007487829.1| - 0.0016 18.0 0.0 0.0024 17.4 0.0 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF938) TehB PF03848.9 gi|452207707|ref|YP_007487829.1| - 0.0041 16.3 0.0 0.0052 15.9 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB MTS PF05175.9 gi|452207707|ref|YP_007487829.1| - 0.0062 15.9 0.0 0.0088 15.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_17 PF12692.2 gi|452207707|ref|YP_007487829.1| - 0.0077 15.9 0.0 0.01 15.5 0.0 1.3 1 0 0 1 1 1 1 S-adenosyl-L-methionine methyltransferase Pox_MCEL PF03291.11 gi|452207707|ref|YP_007487829.1| - 0.0095 14.8 0.0 0.013 14.3 0.0 1.1 1 0 0 1 1 1 1 mRNA capping enzyme Methyltransf_24 PF13578.1 gi|452207707|ref|YP_007487829.1| - 0.041 14.7 0.1 0.088 13.6 0.0 1.6 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_9 PF08003.6 gi|452207707|ref|YP_007487829.1| - 0.051 12.2 0.0 0.063 11.9 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) MCPsignal PF00015.16 gi|452207708|ref|YP_007487830.1| - 4.8e-42 143.9 50.9 5.7e-38 130.6 20.0 3.2 2 1 1 3 3 3 3 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.20 gi|452207708|ref|YP_007487830.1| - 3.8e-11 43.0 0.4 3.8e-11 43.0 0.2 6.7 6 2 1 7 7 7 1 HAMP domain RmuC PF02646.11 gi|452207708|ref|YP_007487830.1| - 5.7e-05 22.1 3.1 0.028 13.2 0.1 4.1 4 2 0 4 4 4 1 RmuC family Laminin_II PF06009.7 gi|452207708|ref|YP_007487830.1| - 0.0011 18.7 25.4 0.87 9.3 1.3 5.3 3 1 2 5 5 5 3 Laminin Domain II DUF948 PF06103.6 gi|452207708|ref|YP_007487830.1| - 0.0015 18.3 17.4 0.13 12.1 0.2 5.7 4 3 2 6 6 5 3 Bacterial protein of unknown function (DUF948) Flagellar_rod PF05149.7 gi|452207708|ref|YP_007487830.1| - 0.0019 17.4 0.2 0.0019 17.4 0.1 2.3 2 0 0 2 2 2 1 Paraflagellar rod protein AAA_13 PF13166.1 gi|452207708|ref|YP_007487830.1| - 0.004 15.6 12.1 0.14 10.5 0.2 2.5 1 1 2 3 3 3 3 AAA domain CorA PF01544.13 gi|452207708|ref|YP_007487830.1| - 0.0095 15.0 10.1 0.17 10.9 0.8 3.3 3 0 0 3 3 3 2 CorA-like Mg2+ transporter protein Nup54 PF13874.1 gi|452207708|ref|YP_007487830.1| - 0.014 15.1 4.4 0.028 14.0 0.0 3.2 4 1 0 4 4 3 0 Nucleoporin complex subunit 54 DUF1664 PF07889.7 gi|452207708|ref|YP_007487830.1| - 0.015 15.1 13.7 1.4 8.6 1.0 5.6 3 2 3 6 6 6 0 Protein of unknown function (DUF1664) GAS PF13851.1 gi|452207708|ref|YP_007487830.1| - 0.017 14.2 0.5 1.7 7.7 0.0 3.0 2 1 0 3 3 3 0 Growth-arrest specific micro-tubule binding DUF1395 PF07160.7 gi|452207708|ref|YP_007487830.1| - 0.023 14.2 1.1 0.088 12.2 0.2 2.2 1 1 0 2 2 2 0 Protein of unknown function (DUF1395) Sec34 PF04136.10 gi|452207708|ref|YP_007487830.1| - 0.04 13.6 2.1 6.9 6.3 0.1 3.4 4 0 0 4 4 4 0 Sec34-like family IncA PF04156.9 gi|452207708|ref|YP_007487830.1| - 0.11 12.0 19.7 2.8 7.5 2.6 4.2 2 2 1 3 3 3 0 IncA protein Snapin_Pallidin PF14712.1 gi|452207708|ref|YP_007487830.1| - 0.23 11.7 0.7 3.6 7.9 0.0 3.4 3 1 1 4 4 3 0 Snapin/Pallidin Fib_alpha PF08702.5 gi|452207708|ref|YP_007487830.1| - 0.32 11.1 0.9 25 4.9 0.1 3.3 3 0 0 3 3 3 0 Fibrinogen alpha/beta chain family Bacillus_HBL PF05791.6 gi|452207708|ref|YP_007487830.1| - 0.6 9.4 2.6 1.5 8.1 0.3 2.7 2 1 1 3 3 3 0 Bacillus haemolytic enterotoxin (HBL) Syntaxin PF00804.20 gi|452207708|ref|YP_007487830.1| - 1.1 9.4 13.7 5.7 7.1 0.3 4.1 2 1 3 5 5 4 0 Syntaxin Baculo_PEP_C PF04513.7 gi|452207708|ref|YP_007487830.1| - 1.3 8.8 16.7 0.64 9.8 0.3 4.8 1 1 2 4 4 4 0 Baculovirus polyhedron envelope protein, PEP, C terminus NPV_P10 PF05531.7 gi|452207708|ref|YP_007487830.1| - 1.5 9.1 17.6 21 5.4 0.1 6.3 6 1 1 7 7 6 0 Nucleopolyhedrovirus P10 protein Seryl_tRNA_N PF02403.17 gi|452207708|ref|YP_007487830.1| - 2.8 7.9 15.6 5.1 7.1 0.4 4.8 2 1 4 6 6 6 0 Seryl-tRNA synthetase N-terminal domain V_ATPase_I PF01496.14 gi|452207708|ref|YP_007487830.1| - 4.2 5.1 6.9 3 5.5 3.2 1.8 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family CheZ PF04344.8 gi|452207708|ref|YP_007487830.1| - 5.3 6.6 19.7 0.097 12.3 1.7 3.6 1 1 0 2 2 2 0 Chemotaxis phosphatase, CheZ Orn_Arg_deC_N PF02784.11 gi|452207709|ref|YP_007487831.1| - 4.5e-43 147.2 0.0 5.8e-43 146.8 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Orn_DAP_Arg_deC PF00278.17 gi|452207709|ref|YP_007487831.1| - 6.7e-18 64.4 0.0 1e-17 63.9 0.0 1.2 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, C-terminal sheet domain DeoC PF01791.4 gi|452207710|ref|YP_007487832.1| - 2.9e-35 121.6 1.6 3.2e-35 121.5 1.1 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase DHO_dh PF01180.16 gi|452207710|ref|YP_007487832.1| - 0.006 15.5 1.1 0.025 13.5 0.3 2.1 2 1 1 3 3 3 1 Dihydroorotate dehydrogenase NAD_binding_2 PF03446.10 gi|452207710|ref|YP_007487832.1| - 0.036 13.9 0.2 0.42 10.4 0.1 2.3 2 1 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase DUF4010 PF13194.1 gi|452207711|ref|YP_007487833.1| - 4.5e-67 225.4 16.1 4.5e-67 225.4 11.1 2.9 2 1 0 3 3 3 1 Domain of unknown function (DUF4010) MgtC PF02308.11 gi|452207711|ref|YP_007487833.1| - 1.1e-05 25.2 7.9 1.1e-05 25.2 5.5 4.2 4 2 0 4 4 4 2 MgtC family Lyase_1 PF00206.15 gi|452207712|ref|YP_007487834.1| - 6.4e-48 163.5 0.0 9.2e-48 163.0 0.0 1.2 1 0 0 1 1 1 1 Lyase ASL_C PF08328.6 gi|452207712|ref|YP_007487834.1| - 2.2e-40 137.0 0.0 3.6e-40 136.3 0.0 1.3 1 0 0 1 1 1 1 Adenylosuccinate lyase C-terminal HAD_2 PF13419.1 gi|452207713|ref|YP_007487835.1| - 3e-29 102.4 0.0 3.5e-29 102.2 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|452207713|ref|YP_007487835.1| - 2.1e-11 43.3 0.2 2.7e-10 39.7 0.0 2.2 2 0 0 2 2 2 1 HAD-hyrolase-like Hydrolase PF00702.21 gi|452207713|ref|YP_007487835.1| - 6.2e-11 43.1 0.1 2.6e-09 37.8 0.1 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|452207713|ref|YP_007487835.1| - 0.0087 16.2 0.0 0.011 15.9 0.0 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.1 gi|452207713|ref|YP_007487835.1| - 0.093 12.6 0.0 1.1 9.1 0.0 2.1 1 1 0 1 1 1 0 Haloacid dehalogenase-like hydrolase APH PF01636.18 gi|452207714|ref|YP_007487836.1| - 2.9e-17 63.1 4.0 4.1e-17 62.7 2.8 1.3 1 0 0 1 1 1 1 Phosphotransferase enzyme family AICARFT_IMPCHas PF01808.13 gi|452207715|ref|YP_007487837.1| - 3.3e-79 266.2 0.0 4.2e-79 265.8 0.0 1.1 1 0 0 1 1 1 1 AICARFT/IMPCHase bienzyme Formyl_trans_N PF00551.14 gi|452207715|ref|YP_007487837.1| - 6e-41 139.9 0.0 9.4e-41 139.3 0.0 1.3 1 0 0 1 1 1 1 Formyl transferase IF-2B PF01008.12 gi|452207716|ref|YP_007487838.1| - 3.7e-43 147.5 0.9 4.5e-43 147.2 0.7 1.1 1 0 0 1 1 1 1 Initiation factor 2 subunit family RibD_C PF01872.12 gi|452207716|ref|YP_007487838.1| - 0.0085 15.7 0.1 0.022 14.3 0.1 1.4 1 1 0 1 1 1 1 RibD C-terminal domain UDPG_MGDP_dh_N PF03721.9 gi|452207717|ref|YP_007487839.1| - 1e-50 171.7 0.0 1.7e-50 170.9 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.14 gi|452207717|ref|YP_007487839.1| - 2.5e-30 104.5 0.0 5e-30 103.5 0.0 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.10 gi|452207717|ref|YP_007487839.1| - 2.6e-27 95.0 0.1 1.4e-26 92.6 0.0 2.3 3 0 0 3 3 1 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NAD_Gly3P_dh_N PF01210.18 gi|452207717|ref|YP_007487839.1| - 7.8e-10 38.6 0.8 1.2e-07 31.5 0.0 3.1 2 1 1 3 3 3 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 3HCDH_N PF02737.13 gi|452207717|ref|YP_007487839.1| - 1.8e-06 27.6 1.0 5.8e-06 26.0 0.2 2.1 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.11 gi|452207717|ref|YP_007487839.1| - 4.9e-06 26.0 0.2 1.1e-05 24.9 0.1 1.7 1 1 0 1 1 1 1 Ketopantoate reductase PanE/ApbA F420_oxidored PF03807.12 gi|452207717|ref|YP_007487839.1| - 3.1e-05 24.3 2.3 0.22 11.9 0.0 4.3 4 1 1 5 5 5 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.10 gi|452207717|ref|YP_007487839.1| - 7e-05 22.7 0.2 0.0064 16.3 0.0 2.9 2 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase Pyr_redox PF00070.22 gi|452207717|ref|YP_007487839.1| - 0.00012 22.4 0.3 0.00055 20.2 0.1 2.3 3 0 0 3 3 1 1 Pyridine nucleotide-disulphide oxidoreductase TrkA_N PF02254.13 gi|452207717|ref|YP_007487839.1| - 0.00039 20.4 2.2 0.0018 18.2 0.1 2.8 3 1 0 3 3 2 1 TrkA-N domain NAD_binding_8 PF13450.1 gi|452207717|ref|YP_007487839.1| - 0.0014 18.5 0.3 0.025 14.6 0.1 2.6 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.14 gi|452207717|ref|YP_007487839.1| - 0.0044 16.1 0.1 0.0067 15.5 0.1 1.2 1 0 0 1 1 1 1 FAD binding domain AlaDh_PNT_C PF01262.16 gi|452207717|ref|YP_007487839.1| - 0.0073 15.8 0.0 0.018 14.5 0.0 1.7 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain XdhC_C PF13478.1 gi|452207717|ref|YP_007487839.1| - 0.0091 16.3 1.2 0.087 13.1 0.0 2.7 3 0 0 3 3 3 1 XdhC Rossmann domain DAO PF01266.19 gi|452207717|ref|YP_007487839.1| - 0.019 13.8 3.3 0.021 13.7 0.6 2.1 2 1 0 3 3 3 0 FAD dependent oxidoreductase Methyltransf_18 PF12847.2 gi|452207717|ref|YP_007487839.1| - 0.021 15.3 0.1 2.7 8.5 0.0 3.0 2 1 1 3 3 3 0 Methyltransferase domain NAD_binding_7 PF13241.1 gi|452207717|ref|YP_007487839.1| - 0.034 14.4 0.1 0.87 9.8 0.0 2.6 2 1 0 2 2 2 0 Putative NAD(P)-binding Pyr_redox_2 PF07992.9 gi|452207717|ref|YP_007487839.1| - 0.039 13.8 0.2 0.1 12.4 0.1 1.9 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_10 PF13460.1 gi|452207717|ref|YP_007487839.1| - 0.064 13.2 9.9 0.094 12.7 2.3 3.0 2 2 0 2 2 2 0 NADH(P)-binding Rossmann-like PF10727.4 gi|452207717|ref|YP_007487839.1| - 0.074 12.7 1.1 0.16 11.7 0.1 2.1 2 0 0 2 2 2 0 Rossmann-like domain 2-Hacid_dh_C PF02826.14 gi|452207717|ref|YP_007487839.1| - 0.084 12.0 0.0 0.37 9.9 0.0 2.0 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Methyltransf_26 PF13659.1 gi|452207717|ref|YP_007487839.1| - 0.4 10.7 3.4 2.7 8.0 0.2 2.5 2 1 0 2 2 2 0 Methyltransferase domain Methyltrn_RNA_2 PF04013.7 gi|452207718|ref|YP_007487840.1| - 3.3e-49 167.1 0.0 3.7e-49 166.9 0.0 1.0 1 0 0 1 1 1 1 Putative SAM-dependent RNA methyltransferase HypA PF01155.14 gi|452207720|ref|YP_007487842.1| - 0.062 12.9 0.5 0.065 12.9 0.3 1.0 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family AAA_10 PF12846.2 gi|452207721|ref|YP_007487843.1| - 6e-20 71.8 0.0 1.1e-17 64.4 0.0 2.1 1 1 0 1 1 1 1 AAA-like domain DUF87 PF01935.12 gi|452207721|ref|YP_007487843.1| - 7e-07 29.2 0.0 1.3e-06 28.4 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function DUF87 DUF853 PF05872.7 gi|452207721|ref|YP_007487843.1| - 2.1e-06 26.4 0.2 0.0032 15.8 0.0 2.3 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) FtsK_SpoIIIE PF01580.13 gi|452207721|ref|YP_007487843.1| - 1.2e-05 24.9 1.0 0.055 12.9 0.1 2.5 2 1 0 2 2 2 2 FtsK/SpoIIIE family HAS-barrel PF09378.5 gi|452207721|ref|YP_007487843.1| - 3.2e-05 23.7 0.3 0.00039 20.2 0.1 2.6 3 0 0 3 3 3 1 HAS barrel domain TrwB_AAD_bind PF10412.4 gi|452207721|ref|YP_007487843.1| - 0.0061 15.2 0.0 0.012 14.3 0.0 1.3 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain Zot PF05707.7 gi|452207721|ref|YP_007487843.1| - 0.0066 15.9 0.1 3.6 7.0 0.0 2.2 2 0 0 2 2 2 2 Zonular occludens toxin (Zot) AAA_19 PF13245.1 gi|452207721|ref|YP_007487843.1| - 0.011 15.4 0.4 0.041 13.6 0.1 2.1 2 0 0 2 2 2 0 Part of AAA domain AAA_22 PF13401.1 gi|452207721|ref|YP_007487843.1| - 0.069 13.2 0.0 0.25 11.4 0.0 1.9 2 0 0 2 2 2 0 AAA domain T2SE PF00437.15 gi|452207721|ref|YP_007487843.1| - 0.081 11.8 0.0 0.24 10.2 0.0 1.7 2 0 0 2 2 2 0 Type II/IV secretion system protein AAA_16 PF13191.1 gi|452207721|ref|YP_007487843.1| - 0.09 12.7 0.0 4.4 7.2 0.0 2.4 2 1 0 2 2 2 0 AAA ATPase domain AAA PF00004.24 gi|452207721|ref|YP_007487843.1| - 0.14 12.3 0.8 4.4 7.4 0.1 2.3 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) KaiC PF06745.8 gi|452207722|ref|YP_007487844.1| - 1.2e-07 31.1 0.0 2.7e-05 23.4 0.0 2.1 1 1 0 1 1 1 1 KaiC OTCace_N PF02729.16 gi|452207723|ref|YP_007487845.1| - 8.2e-43 145.4 0.0 1.4e-42 144.7 0.0 1.4 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.19 gi|452207723|ref|YP_007487845.1| - 8.8e-36 123.1 0.0 1.2e-35 122.6 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain PyrI PF01948.13 gi|452207724|ref|YP_007487846.1| - 4.2e-37 126.0 0.2 5.4e-37 125.7 0.1 1.1 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, allosteric domain PyrI_C PF02748.10 gi|452207724|ref|YP_007487846.1| - 2.6e-16 58.7 0.7 2.6e-16 58.7 0.5 1.6 2 0 0 2 2 2 1 Aspartate carbamoyltransferase regulatory chain, metal binding domain Glyco_hydro_42 PF02449.10 gi|452207725|ref|YP_007487847.1| - 0.0038 16.4 0.1 0.0081 15.3 0.0 1.5 1 1 0 1 1 1 1 Beta-galactosidase DUF4015 PF13200.1 gi|452207725|ref|YP_007487847.1| - 0.088 11.7 0.0 0.12 11.3 0.0 1.2 1 0 0 1 1 1 0 Putative glycosyl hydrolase domain NUDIX PF00293.23 gi|452207726|ref|YP_007487848.1| - 7.3e-17 61.2 0.1 1.3e-16 60.4 0.0 1.4 1 0 0 1 1 1 1 NUDIX domain DUF1918 PF08940.6 gi|452207727|ref|YP_007487849.1| - 0.005 16.1 0.1 0.0062 15.8 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1918) NifZ PF04319.8 gi|452207727|ref|YP_007487849.1| - 0.045 13.1 0.4 0.07 12.5 0.3 1.4 1 1 0 1 1 1 0 NifZ domain RNA_binding PF01877.12 gi|452207728|ref|YP_007487850.1| - 6.3e-28 97.2 0.0 9.2e-28 96.6 0.0 1.2 1 0 0 1 1 1 1 RNA binding p450 PF00067.17 gi|452207730|ref|YP_007487852.1| - 1.1e-69 235.1 0.0 1.5e-69 234.7 0.0 1.0 1 0 0 1 1 1 1 Cytochrome P450 TetR_C_6 PF13977.1 gi|452207730|ref|YP_007487852.1| - 0.017 15.1 2.1 0.017 15.1 1.4 2.7 3 0 0 3 3 3 0 Bacterial transcriptional repressor ResIII PF04851.10 gi|452207732|ref|YP_007487854.1| - 2e-15 57.1 0.0 8.9e-15 54.9 0.0 1.9 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit SNF2_N PF00176.18 gi|452207732|ref|YP_007487854.1| - 1.5e-13 50.1 0.0 2.5e-13 49.5 0.0 1.2 1 0 0 1 1 1 1 SNF2 family N-terminal domain Helicase_C PF00271.26 gi|452207732|ref|YP_007487854.1| - 1.5e-11 43.9 0.1 2.9e-11 43.0 0.1 1.5 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DEAD PF00270.24 gi|452207732|ref|YP_007487854.1| - 2.4e-09 36.9 0.0 4.3e-09 36.0 0.0 1.4 1 0 0 1 1 1 1 DEAD/DEAH box helicase AAA_19 PF13245.1 gi|452207732|ref|YP_007487854.1| - 0.00015 21.4 0.3 0.00072 19.2 0.0 2.3 2 0 0 2 2 2 1 Part of AAA domain AAA_22 PF13401.1 gi|452207732|ref|YP_007487854.1| - 0.00049 20.2 0.0 0.0024 18.0 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|452207732|ref|YP_007487854.1| - 0.00056 20.1 0.0 0.0027 17.9 0.0 2.0 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.1 gi|452207732|ref|YP_007487854.1| - 0.0022 17.4 0.3 0.0095 15.3 0.1 2.1 1 1 1 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|452207732|ref|YP_007487854.1| - 0.05 13.4 0.0 0.2 11.5 0.0 2.0 2 0 0 2 2 2 0 AAA domain Hexapep PF00132.19 gi|452207733|ref|YP_007487855.1| - 3.2e-09 35.8 3.9 2e-08 33.3 0.1 2.9 3 0 0 3 3 3 1 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|452207733|ref|YP_007487855.1| - 1.5e-05 24.4 3.7 3.2e-05 23.4 0.1 2.8 3 0 0 3 3 3 1 Hexapeptide repeat of succinyl-transferase DUF3618 PF12277.3 gi|452207734|ref|YP_007487856.1| - 0.2 11.6 1.8 0.33 11.0 1.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3618) MS_channel PF00924.13 gi|452207735|ref|YP_007487857.1| - 5e-19 68.4 0.4 5e-19 68.4 0.3 1.7 2 0 0 2 2 2 1 Mechanosensitive ion channel TM_helix PF05552.7 gi|452207735|ref|YP_007487857.1| - 2.6e-11 43.0 17.3 6.5e-06 25.7 1.2 4.2 4 0 0 4 4 4 3 Conserved TM helix Fimbrial_PilY2 PF14481.1 gi|452207735|ref|YP_007487857.1| - 0.0034 16.8 0.7 0.012 15.0 0.0 2.2 2 0 0 2 2 2 1 Type 4 fimbrial biogenesis protein PilY2 KOW PF00467.24 gi|452207735|ref|YP_007487857.1| - 0.058 13.1 0.6 0.14 11.9 0.4 1.6 1 0 0 1 1 1 0 KOW motif DPM3 PF08285.6 gi|452207735|ref|YP_007487857.1| - 2.4 8.0 6.4 0.36 10.6 0.5 2.3 1 1 1 2 2 2 0 Dolichol-phosphate mannosyltransferase subunit 3 (DPM3) DisA_N PF02457.11 gi|452207736|ref|YP_007487858.1| - 9.9e-26 89.2 0.0 2.3e-25 88.1 0.0 1.6 2 0 0 2 2 2 1 DisA bacterial checkpoint controller nucleotide-binding HhH-GPD PF00730.20 gi|452207737|ref|YP_007487859.1| - 4.5e-24 84.8 0.0 1.9e-23 82.7 0.0 1.8 2 0 0 2 2 2 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.18 gi|452207737|ref|YP_007487859.1| - 3e-08 32.9 0.0 7.7e-08 31.6 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix motif EndIII_4Fe-2S PF10576.4 gi|452207737|ref|YP_007487859.1| - 1.2e-05 25.2 3.4 2.1e-05 24.4 2.3 1.4 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III DUF2400 PF09674.5 gi|452207737|ref|YP_007487859.1| - 0.095 12.3 0.0 0.33 10.6 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2400) Gp37 PF09646.5 gi|452207738|ref|YP_007487860.1| - 0.11 11.8 0.0 0.18 11.2 0.0 1.3 1 0 0 1 1 1 0 Gp37 protein DUF834 PF05754.9 gi|452207738|ref|YP_007487860.1| - 0.15 11.8 4.3 0.16 11.7 0.4 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF834) zinc_ribbon_5 PF13719.1 gi|452207739|ref|YP_007487861.1| - 0.088 12.4 0.0 0.18 11.4 0.0 1.4 1 0 0 1 1 1 0 zinc-ribbon domain DUF4265 PF14085.1 gi|452207739|ref|YP_007487861.1| - 0.11 12.2 0.0 0.33 10.6 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4265) CheR_N PF03705.10 gi|452207739|ref|YP_007487861.1| - 3.5 7.0 7.2 1 8.7 0.1 3.2 4 0 0 4 4 4 0 CheR methyltransferase, all-alpha domain AAA_23 PF13476.1 gi|452207740|ref|YP_007487862.1| - 7e-09 36.3 8.0 7e-09 36.3 5.6 4.5 2 2 1 3 3 3 1 AAA domain GAS PF13851.1 gi|452207740|ref|YP_007487862.1| - 8.1e-07 28.4 39.7 0.00032 19.9 6.4 4.2 2 2 2 4 4 4 3 Growth-arrest specific micro-tubule binding DivIC PF04977.10 gi|452207740|ref|YP_007487862.1| - 1.3e-06 27.8 55.0 0.053 13.0 1.6 9.0 3 2 7 10 10 10 4 Septum formation initiator Reo_sigmaC PF04582.7 gi|452207740|ref|YP_007487862.1| - 1.1e-05 24.7 7.9 0.0057 15.8 0.9 3.1 2 2 1 3 3 3 2 Reovirus sigma C capsid protein IncA PF04156.9 gi|452207740|ref|YP_007487862.1| - 2e-05 24.2 61.9 0.056 13.0 14.2 4.4 2 2 2 4 4 4 3 IncA protein DUF869 PF05911.6 gi|452207740|ref|YP_007487862.1| - 3.5e-05 22.2 7.6 3.5e-05 22.2 5.3 2.8 2 1 0 2 2 2 1 Plant protein of unknown function (DUF869) SMC_N PF02463.14 gi|452207740|ref|YP_007487862.1| - 4.3e-05 22.8 0.3 0.02 14.1 0.1 2.2 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain Myosin_tail_1 PF01576.14 gi|452207740|ref|YP_007487862.1| - 5e-05 21.2 17.4 5e-05 21.2 12.0 2.8 2 1 0 2 2 2 1 Myosin tail Spc7 PF08317.6 gi|452207740|ref|YP_007487862.1| - 0.00044 19.0 42.4 0.011 14.4 9.2 4.1 2 2 2 4 4 4 3 Spc7 kinetochore protein Syntaxin PF00804.20 gi|452207740|ref|YP_007487862.1| - 0.00053 20.1 32.5 0.015 15.4 1.5 4.2 3 1 0 4 4 4 3 Syntaxin Filament PF00038.16 gi|452207740|ref|YP_007487862.1| - 0.00061 19.3 13.9 0.00061 19.3 9.6 3.5 2 1 0 2 2 2 1 Intermediate filament protein FlxA PF14282.1 gi|452207740|ref|YP_007487862.1| - 0.00084 19.2 19.5 0.33 10.9 0.1 4.8 5 1 0 5 5 4 2 FlxA-like protein AAA_13 PF13166.1 gi|452207740|ref|YP_007487862.1| - 0.00092 17.8 25.8 2 6.7 8.9 3.1 1 1 1 2 2 2 1 AAA domain TBPIP PF07106.8 gi|452207740|ref|YP_007487862.1| - 0.001 18.6 37.9 0.16 11.5 3.0 4.6 2 2 2 4 4 4 3 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Baculo_PEP_C PF04513.7 gi|452207740|ref|YP_007487862.1| - 0.0015 18.3 10.2 1.8 8.4 0.1 4.6 4 1 1 5 5 4 1 Baculovirus polyhedron envelope protein, PEP, C terminus NPV_P10 PF05531.7 gi|452207740|ref|YP_007487862.1| - 0.003 17.7 13.0 9.1 6.6 0.1 6.2 2 2 2 4 4 4 0 Nucleopolyhedrovirus P10 protein ADIP PF11559.3 gi|452207740|ref|YP_007487862.1| - 0.0036 17.2 37.4 0.017 14.9 5.9 4.9 2 2 1 4 4 4 1 Afadin- and alpha -actinin-Binding Snapin_Pallidin PF14712.1 gi|452207740|ref|YP_007487862.1| - 0.0045 17.2 18.4 0.26 11.5 0.0 6.1 3 2 3 6 6 6 1 Snapin/Pallidin DUF3450 PF11932.3 gi|452207740|ref|YP_007487862.1| - 0.0051 16.1 23.5 0.2 10.8 1.0 5.0 4 1 0 5 5 5 1 Protein of unknown function (DUF3450) Fzo_mitofusin PF04799.8 gi|452207740|ref|YP_007487862.1| - 0.0069 15.7 16.6 0.35 10.2 0.2 4.8 3 1 2 5 5 5 2 fzo-like conserved region CENP-F_leu_zip PF10473.4 gi|452207740|ref|YP_007487862.1| - 0.0078 16.0 57.8 0.12 12.2 9.8 5.1 2 2 4 6 6 6 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 TMF_DNA_bd PF12329.3 gi|452207740|ref|YP_007487862.1| - 0.008 15.9 58.6 0.04 13.7 0.5 7.8 3 3 3 7 7 7 1 TATA element modulatory factor 1 DNA binding Atg14 PF10186.4 gi|452207740|ref|YP_007487862.1| - 0.022 13.6 40.7 0.054 12.4 6.4 3.8 2 2 1 3 3 3 0 UV radiation resistance protein and autophagy-related subunit 14 MAD PF05557.8 gi|452207740|ref|YP_007487862.1| - 0.028 12.5 46.2 0.096 10.7 12.0 2.3 2 0 0 2 2 2 0 Mitotic checkpoint protein Seryl_tRNA_N PF02403.17 gi|452207740|ref|YP_007487862.1| - 0.044 13.7 44.6 0.2 11.7 1.7 5.4 2 2 2 5 5 5 0 Seryl-tRNA synthetase N-terminal domain Prefoldin PF02996.12 gi|452207740|ref|YP_007487862.1| - 0.086 12.4 35.1 1.4 8.5 0.5 7.9 4 3 3 8 8 8 0 Prefoldin subunit Mnd1 PF03962.10 gi|452207740|ref|YP_007487862.1| - 0.13 11.9 40.4 0.093 12.3 1.5 4.5 3 1 1 4 4 4 0 Mnd1 family Cortex-I_coil PF09304.5 gi|452207740|ref|YP_007487862.1| - 0.17 11.9 51.2 0.54 10.3 9.3 5.1 3 1 2 5 5 5 0 Cortexillin I, coiled coil AAA_27 PF13514.1 gi|452207740|ref|YP_007487862.1| - 0.17 9.5 50.9 0.066 10.9 8.6 4.2 3 2 2 5 5 5 0 AAA domain Peptidase_C6 PF00851.13 gi|452207740|ref|YP_007487862.1| - 0.19 10.3 0.9 0.55 8.8 0.1 1.9 1 1 1 2 2 2 0 Helper component proteinase Tropomyosin_1 PF12718.2 gi|452207740|ref|YP_007487862.1| - 0.27 11.0 66.7 0.017 14.9 6.0 4.3 2 2 2 4 4 3 0 Tropomyosin like DUF4200 PF13863.1 gi|452207740|ref|YP_007487862.1| - 0.38 10.7 55.4 2.2 8.2 4.7 5.0 2 2 2 4 4 4 0 Domain of unknown function (DUF4200) DUF4140 PF13600.1 gi|452207740|ref|YP_007487862.1| - 0.55 10.6 57.4 0.4 11.1 1.7 7.8 2 2 5 7 7 7 0 N-terminal domain of unknown function (DUF4140) Phage_GP20 PF06810.6 gi|452207740|ref|YP_007487862.1| - 0.57 9.6 36.0 0.84 9.0 0.5 5.1 3 2 1 5 5 5 0 Phage minor structural protein GP20 BRE1 PF08647.6 gi|452207740|ref|YP_007487862.1| - 0.57 10.1 23.5 2.5 8.1 1.8 4.0 3 0 0 3 3 3 0 BRE1 E3 ubiquitin ligase Prefoldin_2 PF01920.15 gi|452207740|ref|YP_007487862.1| - 0.62 9.8 50.8 0.7 9.6 0.5 8.1 3 3 2 6 6 6 0 Prefoldin subunit APG6 PF04111.7 gi|452207740|ref|YP_007487862.1| - 0.82 8.6 50.0 0.51 9.3 7.1 3.8 2 2 1 3 3 3 0 Autophagy protein Apg6 Fmp27_WPPW PF10359.4 gi|452207740|ref|YP_007487862.1| - 1.4 7.2 32.9 0.055 11.8 5.3 3.5 2 2 1 3 3 3 0 RNA pol II promoter Fmp27 protein domain DUF972 PF06156.8 gi|452207740|ref|YP_007487862.1| - 1.4 9.2 31.8 0.19 12.0 0.9 5.1 2 2 2 4 4 4 0 Protein of unknown function (DUF972) COG5 PF10392.4 gi|452207740|ref|YP_007487862.1| - 1.6 8.7 15.5 11 5.9 1.2 4.7 2 2 3 5 5 5 0 Golgi transport complex subunit 5 Bacillus_HBL PF05791.6 gi|452207740|ref|YP_007487862.1| - 1.6 8.0 16.5 2.9 7.2 0.5 4.5 2 2 2 5 5 5 0 Bacillus haemolytic enterotoxin (HBL) WEMBL PF05701.6 gi|452207740|ref|YP_007487862.1| - 2.1 6.6 44.0 1.2 7.4 11.4 3.1 2 1 0 3 3 3 0 Weak chloroplast movement under blue light TMCO5 PF14992.1 gi|452207740|ref|YP_007487862.1| - 2.6 7.1 37.1 0.043 12.9 12.0 2.4 2 0 0 2 2 2 0 TMCO5 family Flagellin_C PF00700.16 gi|452207740|ref|YP_007487862.1| - 3.6 7.8 12.0 0.57 10.3 0.5 3.8 3 1 1 4 4 4 0 Bacterial flagellin C-terminal helical region Fib_alpha PF08702.5 gi|452207740|ref|YP_007487862.1| - 3.9 7.5 20.6 1.3 9.0 2.3 4.8 2 2 3 5 5 5 0 Fibrinogen alpha/beta chain family Mod_r PF07200.8 gi|452207740|ref|YP_007487862.1| - 4.1 7.3 35.2 0.61 9.9 7.1 4.6 2 2 3 5 5 5 0 Modifier of rudimentary (Mod(r)) protein DUF4407 PF14362.1 gi|452207740|ref|YP_007487862.1| - 4.2 6.2 31.5 0.41 9.5 6.8 2.9 2 1 0 2 2 2 0 Domain of unknown function (DUF4407) TPR_MLP1_2 PF07926.7 gi|452207740|ref|YP_007487862.1| - 4.2 7.1 44.4 1.1 8.9 5.6 4.4 3 1 1 4 4 4 0 TPR/MLP1/MLP2-like protein COG2 PF06148.6 gi|452207740|ref|YP_007487862.1| - 4.5 7.1 29.3 0.13 12.1 1.9 5.5 2 2 3 5 5 5 0 COG (conserved oligomeric Golgi) complex component, COG2 Prominin PF05478.6 gi|452207740|ref|YP_007487862.1| - 5.3 4.4 11.1 2.5 5.5 0.5 2.7 2 1 1 3 3 3 0 Prominin DUF4201 PF13870.1 gi|452207740|ref|YP_007487862.1| - 5.6 6.3 38.7 5.6 6.3 0.2 5.3 2 2 2 4 4 4 0 Domain of unknown function (DUF4201) Laminin_II PF06009.7 gi|452207740|ref|YP_007487862.1| - 6.8 6.4 26.7 3.1 7.5 0.5 4.1 2 2 2 4 4 4 0 Laminin Domain II adh_short PF00106.20 gi|452207741|ref|YP_007487863.1| - 1.6e-23 83.4 7.0 2e-23 83.1 4.9 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|452207741|ref|YP_007487863.1| - 2.9e-13 50.1 0.0 3.9e-13 49.7 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|452207741|ref|YP_007487863.1| - 3.5e-11 43.1 2.5 5.9e-11 42.3 1.7 1.3 1 0 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|452207741|ref|YP_007487863.1| - 1e-07 31.6 0.2 5.3e-06 26.0 0.1 2.1 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.1 gi|452207741|ref|YP_007487863.1| - 0.00014 21.9 4.3 0.00037 20.5 3.0 1.6 1 1 0 1 1 1 1 NADH(P)-binding 3HCDH_N PF02737.13 gi|452207741|ref|YP_007487863.1| - 0.0035 17.0 0.3 0.0052 16.4 0.2 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Adenine_deam_C PF13382.1 gi|452207741|ref|YP_007487863.1| - 0.038 13.1 0.5 0.056 12.6 0.3 1.3 1 0 0 1 1 1 0 Adenine deaminase C-terminal domain Eno-Rase_NADH_b PF12242.3 gi|452207741|ref|YP_007487863.1| - 0.041 13.6 0.3 0.13 12.0 0.2 1.9 2 0 0 2 2 2 0 NAD(P)H binding domain of trans-2-enoyl-CoA reductase Amino_oxidase PF01593.19 gi|452207742|ref|YP_007487864.1| - 1.1e-24 87.3 0.5 8.1e-24 84.5 0.3 2.2 1 1 0 1 1 1 1 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.1 gi|452207742|ref|YP_007487864.1| - 5.8e-16 58.2 0.1 1.7e-15 56.8 0.0 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.19 gi|452207742|ref|YP_007487864.1| - 6.2e-16 58.2 0.0 6.5e-08 31.8 0.0 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox PF00070.22 gi|452207742|ref|YP_007487864.1| - 6.1e-06 26.5 0.8 9.1e-05 22.7 0.2 2.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|452207742|ref|YP_007487864.1| - 1e-05 24.5 0.8 1.7e-05 23.8 0.6 1.3 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.9 gi|452207742|ref|YP_007487864.1| - 3.1e-05 23.9 0.1 0.00015 21.7 0.2 1.9 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|452207742|ref|YP_007487864.1| - 0.00021 20.4 0.1 0.00033 19.8 0.1 1.2 1 0 0 1 1 1 1 FAD binding domain Thi4 PF01946.12 gi|452207742|ref|YP_007487864.1| - 0.00031 19.9 0.1 0.00051 19.1 0.1 1.3 1 0 0 1 1 1 1 Thi4 family Pyr_redox_3 PF13738.1 gi|452207742|ref|YP_007487864.1| - 0.0027 17.7 0.6 0.014 15.4 0.2 2.4 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.2 gi|452207742|ref|YP_007487864.1| - 0.0037 16.4 0.0 0.011 14.7 0.0 1.7 2 0 0 2 2 2 1 FAD dependent oxidoreductase UDPG_MGDP_dh_N PF03721.9 gi|452207742|ref|YP_007487864.1| - 0.0051 16.2 0.1 0.0089 15.4 0.1 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Strep_67kDa_ant PF06100.6 gi|452207742|ref|YP_007487864.1| - 0.019 13.3 0.0 0.025 12.9 0.0 1.2 1 0 0 1 1 1 0 Streptococcal 67 kDa myosin-cross-reactive antigen like family HI0933_like PF03486.9 gi|452207742|ref|YP_007487864.1| - 0.022 13.2 0.0 0.07 11.5 0.1 1.7 2 0 0 2 2 2 0 HI0933-like protein 3HCDH_N PF02737.13 gi|452207742|ref|YP_007487864.1| - 0.023 14.3 0.3 0.04 13.5 0.2 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_9 PF13454.1 gi|452207742|ref|YP_007487864.1| - 0.083 12.6 0.2 3.1 7.5 0.1 2.5 2 0 0 2 2 2 0 FAD-NAD(P)-binding IlvN PF07991.7 gi|452207742|ref|YP_007487864.1| - 0.11 11.8 0.0 0.19 11.0 0.0 1.4 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain UbiA PF01040.13 gi|452207743|ref|YP_007487865.1| - 1.7e-25 89.7 25.5 2.2e-25 89.3 17.7 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family DUF422 PF04240.7 gi|452207744|ref|YP_007487866.1| - 1.3e-72 243.6 20.4 1.6e-72 243.3 14.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF422) DUF3329 PF11808.3 gi|452207744|ref|YP_007487866.1| - 0.91 9.6 5.4 0.86 9.7 0.1 2.7 2 0 0 2 2 2 0 Domain of unknown function (DUF3329) SQS_PSY PF00494.14 gi|452207745|ref|YP_007487867.1| - 1.3e-65 221.3 1.6 1.6e-65 221.0 1.1 1.0 1 0 0 1 1 1 1 Squalene/phytoene synthase RNase_H PF00075.19 gi|452207746|ref|YP_007487868.1| - 0.002 18.4 0.0 0.0027 18.0 0.0 1.2 1 0 0 1 1 1 1 RNase H Rad51 PF08423.6 gi|452207747|ref|YP_007487869.1| - 5.3e-28 97.6 0.0 6.8e-28 97.2 0.0 1.0 1 0 0 1 1 1 1 Rad51 AAA_25 PF13481.1 gi|452207747|ref|YP_007487869.1| - 5.3e-18 65.1 0.5 7.2e-18 64.6 0.4 1.1 1 0 0 1 1 1 1 AAA domain RecA PF00154.16 gi|452207747|ref|YP_007487869.1| - 1.4e-11 44.0 0.0 1.7e-11 43.7 0.0 1.2 1 0 0 1 1 1 1 recA bacterial DNA recombination protein Zot PF05707.7 gi|452207747|ref|YP_007487869.1| - 4.7e-08 32.7 0.0 6e-08 32.3 0.0 1.1 1 0 0 1 1 1 1 Zonular occludens toxin (Zot) KaiC PF06745.8 gi|452207747|ref|YP_007487869.1| - 1.9e-07 30.4 0.0 3.8e-07 29.4 0.0 1.6 1 1 0 1 1 1 1 KaiC AAA_24 PF13479.1 gi|452207747|ref|YP_007487869.1| - 0.00087 18.9 0.0 0.0022 17.6 0.1 1.6 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|452207747|ref|YP_007487869.1| - 0.0049 16.5 0.7 0.014 15.1 0.5 2.0 1 1 0 1 1 1 1 Part of AAA domain CobU PF02283.11 gi|452207747|ref|YP_007487869.1| - 0.0075 15.6 0.2 1.9 7.8 0.0 2.2 2 0 0 2 2 2 2 Cobinamide kinase / cobinamide phosphate guanyltransferase IstB_IS21 PF01695.12 gi|452207747|ref|YP_007487869.1| - 0.044 13.2 0.2 0.18 11.1 0.0 1.9 1 1 1 2 2 2 0 IstB-like ATP binding protein Arch_ATPase PF01637.13 gi|452207747|ref|YP_007487869.1| - 0.048 13.3 0.0 0.057 13.1 0.0 1.2 1 0 0 1 1 1 0 Archaeal ATPase cobW PF02492.14 gi|452207747|ref|YP_007487869.1| - 0.052 12.9 0.6 0.86 9.0 0.2 2.1 1 1 1 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_10 PF12846.2 gi|452207747|ref|YP_007487869.1| - 0.058 12.8 0.2 0.23 10.8 0.0 1.9 1 1 0 2 2 2 0 AAA-like domain DUF460 PF04312.8 gi|452207748|ref|YP_007487870.1| - 0.0035 16.8 0.2 0.011 15.2 0.0 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF460) NUP PF06516.6 gi|452207749|ref|YP_007487871.1| - 1.1e-29 103.2 0.0 2e-27 95.8 0.0 2.5 1 1 0 1 1 1 1 Purine nucleoside permease (NUP) PNP_UDP_1 PF01048.15 gi|452207749|ref|YP_007487871.1| - 4e-17 61.9 0.4 4.9e-17 61.6 0.3 1.1 1 0 0 1 1 1 1 Phosphorylase superfamily Transposase_20 PF02371.11 gi|452207749|ref|YP_007487871.1| - 0.23 11.5 1.0 8.5 6.5 0.0 2.2 2 0 0 2 2 2 0 Transposase IS116/IS110/IS902 family Ribosomal_S8e PF01201.17 gi|452207750|ref|YP_007487872.1| - 1.1e-33 116.1 7.1 1.2e-33 116.0 4.9 1.0 1 0 0 1 1 1 1 Ribosomal protein S8e Cytidylate_kin2 PF13189.1 gi|452207751|ref|YP_007487873.1| - 9.6e-16 58.1 0.0 7.3e-15 55.3 0.0 1.9 1 1 0 1 1 1 1 Cytidylate kinase-like family AAA_18 PF13238.1 gi|452207751|ref|YP_007487873.1| - 4e-15 56.2 0.0 5.2e-15 55.8 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|452207751|ref|YP_007487873.1| - 2.6e-10 41.1 0.1 4.4e-10 40.4 0.1 1.6 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|452207751|ref|YP_007487873.1| - 9.9e-05 22.2 0.3 0.00043 20.1 0.2 1.8 1 1 0 1 1 1 1 AAA domain ADK PF00406.17 gi|452207751|ref|YP_007487873.1| - 0.00058 19.7 0.0 0.0024 17.7 0.0 1.9 1 1 1 2 2 2 1 Adenylate kinase AAA PF00004.24 gi|452207751|ref|YP_007487873.1| - 0.015 15.5 0.0 0.025 14.7 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.1 gi|452207751|ref|YP_007487873.1| - 0.038 13.9 0.1 0.067 13.1 0.1 1.6 1 1 0 1 1 1 0 AAA domain TGFb_propeptide PF00688.13 gi|452207751|ref|YP_007487873.1| - 0.065 12.5 0.0 0.087 12.0 0.0 1.1 1 0 0 1 1 1 0 TGF-beta propeptide AAA_19 PF13245.1 gi|452207751|ref|YP_007487873.1| - 0.12 12.0 0.0 0.25 11.0 0.0 1.5 1 0 0 1 1 1 0 Part of AAA domain YqzM PF14141.1 gi|452207752|ref|YP_007487874.1| - 0.14 11.9 3.9 0.15 11.8 0.3 2.0 2 0 0 2 2 2 0 YqzM-like protein Isochorismatase PF00857.15 gi|452207753|ref|YP_007487875.1| - 1.8e-34 119.1 0.0 2.2e-34 118.9 0.0 1.0 1 0 0 1 1 1 1 Isochorismatase family XdhC_C PF13478.1 gi|452207753|ref|YP_007487875.1| - 0.099 12.9 0.1 0.16 12.2 0.0 1.3 1 0 0 1 1 1 0 XdhC Rossmann domain YqcI_YcgG PF08892.6 gi|452207754|ref|YP_007487876.1| - 7.7e-72 241.4 0.0 8.9e-72 241.1 0.0 1.0 1 0 0 1 1 1 1 YqcI/YcgG family DUF3029 PF11230.3 gi|452207754|ref|YP_007487876.1| - 0.094 10.8 0.0 0.13 10.4 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3029) FecR PF04773.8 gi|452207755|ref|YP_007487877.1| - 0.13 12.5 0.0 0.14 12.3 0.0 1.2 1 0 0 1 1 1 0 FecR protein HATPase_c PF02518.21 gi|452207756|ref|YP_007487878.1| - 1.9e-14 53.3 0.0 2.9e-14 52.6 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.1 gi|452207756|ref|YP_007487878.1| - 1.1e-07 31.6 0.0 1.9e-07 30.8 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain Lzipper-MIP1 PF14389.1 gi|452207756|ref|YP_007487878.1| - 0.032 14.3 3.2 0.072 13.2 1.5 1.8 2 0 0 2 2 2 0 Leucine-zipper of ternary complex factor MIP1 HATPase_c_3 PF13589.1 gi|452207756|ref|YP_007487878.1| - 0.033 13.8 0.0 0.052 13.2 0.0 1.3 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Macoilin PF09726.4 gi|452207756|ref|YP_007487878.1| - 0.16 10.2 0.0 0.23 9.7 0.0 1.1 1 0 0 1 1 1 0 Transmembrane protein TatD_DNase PF01026.16 gi|452207757|ref|YP_007487879.1| - 2.2e-19 69.6 0.0 5e-16 58.6 0.0 2.0 2 0 0 2 2 2 2 TatD related DNase AP_endonuc_2 PF01261.19 gi|452207757|ref|YP_007487879.1| - 0.016 14.4 0.2 0.028 13.7 0.2 1.3 1 0 0 1 1 1 0 Xylose isomerase-like TIM barrel CitG PF01874.11 gi|452207757|ref|YP_007487879.1| - 0.06 12.5 0.2 0.29 10.3 0.0 1.9 1 1 0 2 2 2 0 ATP:dephospho-CoA triphosphoribosyl transferase Acetyltransf_1 PF00583.19 gi|452207758|ref|YP_007487880.1| - 4.5e-10 39.4 0.0 7.1e-10 38.7 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|452207758|ref|YP_007487880.1| - 2.4e-09 37.3 0.0 3.1e-09 36.9 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|452207758|ref|YP_007487880.1| - 3e-06 27.2 0.0 5.2e-06 26.5 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|452207758|ref|YP_007487880.1| - 6.8e-06 26.0 0.0 8.8e-06 25.6 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|452207758|ref|YP_007487880.1| - 0.00013 21.9 0.0 0.00017 21.5 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|452207758|ref|YP_007487880.1| - 0.00079 19.5 0.0 0.00084 19.5 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|452207758|ref|YP_007487880.1| - 0.033 14.0 0.0 0.069 13.0 0.0 1.6 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain DUF457 PF04307.9 gi|452207759|ref|YP_007487881.1| - 7.7e-09 35.0 11.5 8.6e-09 34.9 8.0 1.3 1 1 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) DUF457 PF04307.9 gi|452207760|ref|YP_007487882.1| - 8.2e-11 41.4 5.6 1e-10 41.1 3.9 1.2 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) DUF2955 PF11168.3 gi|452207760|ref|YP_007487882.1| - 0.033 13.8 0.6 0.033 13.8 0.4 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2955) HTH_3 PF01381.17 gi|452207761|ref|YP_007487883.1| - 2.8e-08 33.4 0.1 1.2e-07 31.4 0.0 2.1 3 0 0 3 3 3 1 Helix-turn-helix HTH_31 PF13560.1 gi|452207761|ref|YP_007487883.1| - 8e-08 32.3 1.0 8e-08 32.3 0.7 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_19 PF12844.2 gi|452207761|ref|YP_007487883.1| - 8.7e-08 32.1 0.0 4e-07 29.9 0.0 2.1 3 0 0 3 3 3 1 Helix-turn-helix domain Aldo_ket_red PF00248.16 gi|452207762|ref|YP_007487884.1| - 9.6e-65 218.1 0.0 1.1e-64 217.9 0.0 1.1 1 0 0 1 1 1 1 Aldo/keto reductase family DEP PF00610.16 gi|452207762|ref|YP_007487884.1| - 0.092 12.4 0.0 0.35 10.6 0.0 1.9 2 0 0 2 2 2 0 Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP) Cob_adeno_trans PF01923.13 gi|452207763|ref|YP_007487885.1| - 7.2e-60 201.4 0.0 8.1e-60 201.3 0.0 1.0 1 0 0 1 1 1 1 Cobalamin adenosyltransferase DAO PF01266.19 gi|452207764|ref|YP_007487886.1| - 1.6e-13 50.3 4.9 1.3e-06 27.5 1.3 2.8 1 1 1 2 2 2 2 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|452207764|ref|YP_007487886.1| - 2e-08 33.7 2.1 1.1e-07 31.2 1.5 1.9 1 1 0 1 1 1 1 FAD binding domain FAD_binding_2 PF00890.19 gi|452207764|ref|YP_007487886.1| - 5.6e-06 25.4 3.2 1.1e-05 24.5 2.2 1.4 1 0 0 1 1 1 1 FAD binding domain HI0933_like PF03486.9 gi|452207764|ref|YP_007487886.1| - 2.5e-05 22.9 0.4 0.0015 17.0 0.7 2.1 2 0 0 2 2 2 1 HI0933-like protein FAD_oxidored PF12831.2 gi|452207764|ref|YP_007487886.1| - 2.6e-05 23.4 5.6 2.6e-05 23.4 3.9 2.6 3 0 0 3 3 3 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|452207764|ref|YP_007487886.1| - 3.4e-05 23.7 0.4 3.4e-05 23.7 0.2 2.4 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Trp_halogenase PF04820.9 gi|452207764|ref|YP_007487886.1| - 3.8e-05 22.5 0.6 0.009 14.6 0.0 2.1 1 1 1 2 2 2 2 Tryptophan halogenase Thi4 PF01946.12 gi|452207764|ref|YP_007487886.1| - 6.6e-05 22.1 0.3 0.00013 21.1 0.2 1.4 1 0 0 1 1 1 1 Thi4 family Pyr_redox_2 PF07992.9 gi|452207764|ref|YP_007487886.1| - 9.1e-05 22.4 4.9 9.3e-05 22.3 0.7 2.5 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|452207764|ref|YP_007487886.1| - 0.00016 20.6 0.8 0.00016 20.6 0.6 2.4 2 1 1 3 3 3 1 Glucose inhibited division protein A Lycopene_cycl PF05834.7 gi|452207764|ref|YP_007487886.1| - 0.0045 15.9 0.1 0.3 9.9 0.4 2.1 2 0 0 2 2 2 1 Lycopene cyclase protein Pyr_redox PF00070.22 gi|452207764|ref|YP_007487886.1| - 0.031 14.6 0.8 0.49 10.8 0.4 2.5 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|452207764|ref|YP_007487886.1| - 0.41 10.6 3.9 1.4 8.8 0.3 2.7 3 1 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.13 gi|452207764|ref|YP_007487886.1| - 8 6.0 6.0 0.45 10.1 0.2 1.7 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DUF2188 PF09954.4 gi|452207765|ref|YP_007487887.1| - 0.024 14.5 0.8 0.29 11.0 0.0 2.1 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2188) FAD-oxidase_C PF02913.14 gi|452207766|ref|YP_007487888.1| - 7e-53 179.4 1.6 8.9e-53 179.1 0.1 1.9 2 0 0 2 2 2 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.18 gi|452207766|ref|YP_007487888.1| - 6.8e-39 132.5 0.1 1.3e-38 131.5 0.1 1.5 1 0 0 1 1 1 1 FAD binding domain Fer4_8 PF13183.1 gi|452207766|ref|YP_007487888.1| - 8.4e-09 35.3 5.8 1.9e-08 34.2 4.0 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|452207766|ref|YP_007487888.1| - 8.5e-09 35.6 5.3 1.7e-08 34.6 3.7 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain CCG PF02754.11 gi|452207766|ref|YP_007487888.1| - 8.1e-07 28.9 0.9 0.0012 18.8 0.1 3.1 3 0 0 3 3 2 2 Cysteine-rich domain Fer4_18 PF13746.1 gi|452207766|ref|YP_007487888.1| - 1.3e-06 28.7 1.5 1.2e-05 25.5 0.1 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|452207766|ref|YP_007487888.1| - 0.001 18.8 3.0 0.058 13.2 0.2 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|452207766|ref|YP_007487888.1| - 0.0027 18.0 5.2 0.0071 16.7 3.6 1.8 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|452207766|ref|YP_007487888.1| - 0.0072 16.1 9.2 0.2 11.6 0.7 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.22 gi|452207766|ref|YP_007487888.1| - 0.019 14.5 12.4 0.23 11.1 2.8 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_9 PF13187.1 gi|452207766|ref|YP_007487888.1| - 0.054 13.7 11.2 0.068 13.4 1.3 2.6 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|452207766|ref|YP_007487888.1| - 0.056 13.2 10.6 0.19 11.5 0.9 2.4 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|452207766|ref|YP_007487888.1| - 0.68 10.4 12.1 0.95 9.9 2.0 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_15 PF13459.1 gi|452207766|ref|YP_007487888.1| - 0.91 10.1 8.2 5 7.7 0.1 3.7 3 0 0 3 3 2 0 4Fe-4S single cluster domain Fer4_6 PF12837.2 gi|452207766|ref|YP_007487888.1| - 4.5 7.2 11.4 6.8 6.7 1.8 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain TFIID_20kDa PF03847.8 gi|452207767|ref|YP_007487889.1| - 0.03 14.6 0.1 0.049 13.9 0.1 1.3 1 0 0 1 1 1 0 Transcription initiation factor TFIID subunit A Ribosomal_L1 PF00687.16 gi|452207770|ref|YP_007487892.1| - 1.8e-44 151.6 0.0 2.1e-44 151.4 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L1p/L10e family Ribosomal_L10 PF00466.15 gi|452207771|ref|YP_007487893.1| - 4.1e-20 71.5 0.0 9.9e-20 70.3 0.0 1.6 1 0 0 1 1 1 1 Ribosomal protein L10 Ribosomal_60s PF00428.14 gi|452207771|ref|YP_007487893.1| - 0.055 13.8 21.8 0.052 13.9 12.6 2.6 2 1 0 2 2 2 0 60s Acidic ribosomal protein PPP4R2 PF09184.6 gi|452207771|ref|YP_007487893.1| - 3 7.3 8.3 4.2 6.8 5.7 1.3 1 0 0 1 1 1 0 PPP4R2 Ribosomal_60s PF00428.14 gi|452207772|ref|YP_007487894.1| - 2e-14 53.7 18.8 3e-14 53.1 13.1 1.3 1 0 0 1 1 1 1 60s Acidic ribosomal protein DUF2796 PF10986.3 gi|452207772|ref|YP_007487894.1| - 0.32 10.9 4.0 0.4 10.6 2.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2796) NOA36 PF06524.7 gi|452207772|ref|YP_007487894.1| - 0.41 9.8 7.7 0.49 9.6 5.4 1.1 1 0 0 1 1 1 0 NOA36 protein CENP-T PF15511.1 gi|452207772|ref|YP_007487894.1| - 0.83 8.8 8.2 0.96 8.6 5.7 1.0 1 0 0 1 1 1 0 Centromere kinetochore component CENP-T Cwf_Cwc_15 PF04889.7 gi|452207772|ref|YP_007487894.1| - 1 9.0 5.7 1 9.0 4.0 1.1 1 0 0 1 1 1 0 Cwf15/Cwc15 cell cycle control protein DUF2457 PF10446.4 gi|452207772|ref|YP_007487894.1| - 1.9 7.1 11.3 1.9 7.1 7.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2457) CDC45 PF02724.9 gi|452207772|ref|YP_007487894.1| - 8 4.3 7.3 8.9 4.2 5.0 1.0 1 0 0 1 1 1 0 CDC45-like protein TctA PF01970.11 gi|452207773|ref|YP_007487895.1| - 5.3e-58 196.4 47.1 6.9e-58 196.0 32.6 1.1 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter TctA family tRNA-synt_1e PF01406.14 gi|452207774|ref|YP_007487896.1| - 8.4e-103 343.6 0.0 1.3e-101 339.7 0.0 2.0 1 1 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain DALR_2 PF09190.6 gi|452207774|ref|YP_007487896.1| - 6.6e-14 51.9 1.7 9.6e-14 51.3 0.4 1.9 2 0 0 2 2 2 1 DALR domain tRNA-synt_1g PF09334.6 gi|452207774|ref|YP_007487896.1| - 6.6e-09 34.8 1.3 6.3e-05 21.8 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1f PF01921.13 gi|452207774|ref|YP_007487896.1| - 3.1e-07 29.4 0.1 0.00065 18.4 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (K) tRNA-synt_1 PF00133.17 gi|452207774|ref|YP_007487896.1| - 0.00053 18.1 0.5 0.0011 17.0 0.0 1.7 2 0 0 2 2 2 1 tRNA synthetases class I (I, L, M and V) tRNA-synt_1d PF00750.14 gi|452207774|ref|YP_007487896.1| - 0.016 14.0 0.1 1.4 7.6 0.1 2.2 2 0 0 2 2 2 0 tRNA synthetases class I (R) tRNA-synt_1c PF00749.16 gi|452207774|ref|YP_007487896.1| - 0.073 11.7 0.0 0.13 10.8 0.0 1.4 1 0 0 1 1 1 0 tRNA synthetases class I (E and Q), catalytic domain CbiX PF01903.12 gi|452207776|ref|YP_007487898.1| - 5.2e-41 139.0 1.7 1.6e-21 76.3 0.0 2.4 3 0 0 3 3 3 2 CbiX CbiK PF06180.6 gi|452207776|ref|YP_007487898.1| - 1.1e-08 34.4 0.2 0.00031 19.9 0.2 2.1 1 1 0 2 2 2 2 Cobalt chelatase (CbiK) Branch PF02485.16 gi|452207776|ref|YP_007487898.1| - 0.12 11.4 0.0 0.17 10.9 0.0 1.2 1 0 0 1 1 1 0 Core-2/I-Branching enzyme DUF4285 PF14113.1 gi|452207777|ref|YP_007487899.1| - 0.1 12.5 0.0 0.17 11.8 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4285) DUF2530 PF10745.4 gi|452207778|ref|YP_007487900.1| - 0.081 12.9 1.5 0.14 12.1 1.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2530) DUF3040 PF11239.3 gi|452207778|ref|YP_007487900.1| - 0.15 12.1 1.1 0.3 11.1 0.8 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3040) Trm112p PF03966.11 gi|452207779|ref|YP_007487901.1| - 1.1e-12 48.1 1.7 1.8e-12 47.4 1.2 1.4 1 1 0 1 1 1 1 Trm112p-like protein TF_Zn_Ribbon PF08271.7 gi|452207779|ref|YP_007487901.1| - 0.025 13.9 0.2 0.038 13.3 0.1 1.5 1 0 0 1 1 1 0 TFIIB zinc-binding ADK_lid PF05191.9 gi|452207779|ref|YP_007487901.1| - 0.028 14.0 0.0 0.053 13.1 0.0 1.5 1 0 0 1 1 1 0 Adenylate kinase, active site lid RRN7 PF11781.3 gi|452207779|ref|YP_007487901.1| - 0.033 13.6 0.4 0.073 12.5 0.1 1.8 1 1 1 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 Nudix_N_2 PF14803.1 gi|452207779|ref|YP_007487901.1| - 0.091 12.4 0.5 0.17 11.5 0.3 1.6 1 1 0 1 1 1 0 Nudix N-terminal A2L_zn_ribbon PF08792.5 gi|452207779|ref|YP_007487901.1| - 0.19 11.2 0.1 0.19 11.2 0.0 2.1 3 0 0 3 3 3 0 A2L zinc ribbon domain DUF123 PF01986.11 gi|452207780|ref|YP_007487902.1| - 1.4e-24 86.0 0.0 1.8e-24 85.7 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF123 EamA PF00892.15 gi|452207781|ref|YP_007487903.1| - 1.2e-30 106.1 28.8 3e-16 59.5 6.7 2.2 2 0 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|452207781|ref|YP_007487903.1| - 1.7e-06 28.2 8.7 1.7e-06 28.2 6.0 3.3 3 1 1 4 4 4 1 Multidrug resistance efflux transporter TPT PF03151.11 gi|452207781|ref|YP_007487903.1| - 0.41 10.2 16.9 3.1 7.4 6.7 3.5 2 2 0 2 2 2 0 Triose-phosphate Transporter family Polyketide_cyc2 PF10604.4 gi|452207782|ref|YP_007487904.1| - 5.3e-05 23.4 0.2 6.4e-05 23.1 0.1 1.1 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc PF03364.15 gi|452207782|ref|YP_007487904.1| - 0.00088 19.2 0.0 0.0022 17.9 0.0 1.6 1 1 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport AHSA1 PF08327.6 gi|452207782|ref|YP_007487904.1| - 0.04 14.0 0.1 0.2 11.7 0.0 2.1 1 1 0 1 1 1 0 Activator of Hsp90 ATPase homolog 1-like protein HTH_24 PF13412.1 gi|452207783|ref|YP_007487905.1| - 5e-12 45.0 0.0 8.3e-12 44.3 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding AsnC_trans_reg PF01037.16 gi|452207783|ref|YP_007487905.1| - 2.5e-11 43.0 0.1 4e-11 42.4 0.1 1.3 1 0 0 1 1 1 1 AsnC family HTH_AsnC-type PF13404.1 gi|452207783|ref|YP_007487905.1| - 5.8e-08 32.1 0.0 1e-07 31.3 0.0 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.7 gi|452207783|ref|YP_007487905.1| - 1.6e-07 30.8 0.0 4.1e-07 29.5 0.0 1.8 1 1 0 1 1 1 1 HTH domain HTH_20 PF12840.2 gi|452207783|ref|YP_007487905.1| - 1.3e-06 28.0 0.0 2.5e-06 27.2 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|452207783|ref|YP_007487905.1| - 1e-05 25.1 0.0 0.00012 21.6 0.0 2.3 2 1 1 3 3 3 1 MarR family HTH_IclR PF09339.5 gi|452207783|ref|YP_007487905.1| - 1.2e-05 24.8 0.0 2.2e-05 23.9 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR PF01047.17 gi|452207783|ref|YP_007487905.1| - 1.3e-05 24.8 0.0 3.4e-05 23.4 0.0 1.6 2 0 0 2 2 1 1 MarR family HTH_DeoR PF08220.7 gi|452207783|ref|YP_007487905.1| - 2.4e-05 23.7 0.0 5.1e-05 22.7 0.0 1.5 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain Fe_dep_repress PF01325.14 gi|452207783|ref|YP_007487905.1| - 4e-05 23.4 0.1 8.9e-05 22.3 0.0 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_23 PF13384.1 gi|452207783|ref|YP_007487905.1| - 7.9e-05 22.1 0.0 0.00016 21.2 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain Rrf2 PF02082.15 gi|452207783|ref|YP_007487905.1| - 0.00013 22.0 0.0 0.00082 19.4 0.0 1.9 2 0 0 2 2 2 1 Transcriptional regulator HTH_36 PF13730.1 gi|452207783|ref|YP_007487905.1| - 0.00018 21.5 0.0 0.00031 20.8 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|452207783|ref|YP_007487905.1| - 0.00046 19.8 0.3 0.00095 18.8 0.0 1.6 2 0 0 2 2 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.15 gi|452207783|ref|YP_007487905.1| - 0.00061 19.4 0.0 0.0011 18.5 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_28 PF13518.1 gi|452207783|ref|YP_007487905.1| - 0.001 19.0 0.0 0.0016 18.4 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain LacI PF00356.16 gi|452207783|ref|YP_007487905.1| - 0.0014 18.1 0.0 0.055 13.0 0.0 2.5 2 0 0 2 2 2 1 Bacterial regulatory proteins, lacI family FaeA PF04703.7 gi|452207783|ref|YP_007487905.1| - 0.0022 18.1 0.0 0.0038 17.3 0.0 1.3 1 0 0 1 1 1 1 FaeA-like protein GntR PF00392.16 gi|452207783|ref|YP_007487905.1| - 0.0022 17.4 0.0 0.0049 16.2 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_34 PF13601.1 gi|452207783|ref|YP_007487905.1| - 0.004 17.1 0.0 0.0097 15.9 0.0 1.8 2 1 0 2 2 1 1 Winged helix DNA-binding domain HTH_45 PF14947.1 gi|452207783|ref|YP_007487905.1| - 0.0043 16.8 0.0 0.01 15.5 0.0 1.6 1 1 0 1 1 1 1 Winged helix-turn-helix HTH_29 PF13551.1 gi|452207783|ref|YP_007487905.1| - 0.011 15.8 0.0 0.016 15.3 0.0 1.4 1 1 0 1 1 1 0 Winged helix-turn helix HTH_27 PF13463.1 gi|452207783|ref|YP_007487905.1| - 0.012 15.9 0.0 0.023 15.0 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_10 PF04967.7 gi|452207783|ref|YP_007487905.1| - 0.025 14.1 0.1 0.059 12.9 0.0 1.6 2 0 0 2 2 1 0 HTH DNA binding domain Phage_NinH PF06322.6 gi|452207783|ref|YP_007487905.1| - 0.031 13.8 0.0 0.081 12.5 0.0 1.7 2 0 0 2 2 1 0 Phage NinH protein DUF4110 PF13422.1 gi|452207783|ref|YP_007487905.1| - 0.033 14.0 0.0 0.071 12.9 0.0 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4110) RPA_C PF08784.6 gi|452207783|ref|YP_007487905.1| - 0.034 14.5 0.0 0.075 13.4 0.0 1.5 1 0 0 1 1 1 0 Replication protein A C terminal TetR_N PF00440.18 gi|452207783|ref|YP_007487905.1| - 0.08 12.5 0.0 0.15 11.7 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family EAP30 PF04157.11 gi|452207783|ref|YP_007487905.1| - 0.089 11.9 0.0 0.17 11.0 0.0 1.4 2 0 0 2 2 2 0 EAP30/Vps36 family HTH_Tnp_ISL3 PF13542.1 gi|452207783|ref|YP_007487905.1| - 0.099 11.8 0.0 0.16 11.1 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 FeoC PF09012.5 gi|452207783|ref|YP_007487905.1| - 0.11 12.2 0.0 0.17 11.5 0.0 1.3 1 0 0 1 1 1 0 FeoC like transcriptional regulator DUF2250 PF10007.4 gi|452207783|ref|YP_007487905.1| - 0.11 12.3 0.0 0.29 11.0 0.0 1.7 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_1 PF00126.22 gi|452207783|ref|YP_007487905.1| - 0.12 12.1 0.0 0.31 10.7 0.0 1.7 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family TFIIE_alpha PF02002.12 gi|452207783|ref|YP_007487905.1| - 0.15 11.5 0.4 0.26 10.8 0.1 1.7 2 1 0 2 2 1 0 TFIIE alpha subunit MarR PF01047.17 gi|452207784|ref|YP_007487906.1| - 9.7e-06 25.2 0.0 1.4e-05 24.6 0.0 1.2 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.2 gi|452207784|ref|YP_007487906.1| - 0.00095 18.7 0.0 0.0014 18.2 0.0 1.2 1 0 0 1 1 1 1 MarR family B-block_TFIIIC PF04182.7 gi|452207784|ref|YP_007487906.1| - 0.0011 18.7 0.0 0.0016 18.2 0.0 1.2 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC NRDE PF05742.7 gi|452207785|ref|YP_007487907.1| - 5.7e-20 71.7 0.0 5.3e-18 65.3 0.0 2.0 2 0 0 2 2 2 2 NRDE protein AMP-binding PF00501.23 gi|452207786|ref|YP_007487908.1| - 6.3e-83 278.4 0.2 7.6e-83 278.2 0.2 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|452207786|ref|YP_007487908.1| - 7.7e-21 74.8 2.3 6.3e-20 71.9 0.0 2.6 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain MR_MLE PF01188.16 gi|452207787|ref|YP_007487909.1| - 5.6e-15 55.6 0.4 2e-14 53.8 0.3 2.0 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain MR_MLE_C PF13378.1 gi|452207787|ref|YP_007487909.1| - 2.6e-10 40.2 1.5 2.6e-10 40.2 1.1 1.9 2 0 0 2 2 2 1 Enolase C-terminal domain-like MR_MLE_N PF02746.11 gi|452207787|ref|YP_007487909.1| - 0.0011 19.0 0.2 0.0011 19.0 0.2 3.1 3 2 0 3 3 3 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Enolase_N PF03952.11 gi|452207787|ref|YP_007487909.1| - 0.089 12.7 1.7 0.11 12.4 0.0 2.0 2 0 0 2 2 2 0 Enolase, N-terminal domain UbiA PF01040.13 gi|452207788|ref|YP_007487910.1| - 6.5e-40 136.9 24.7 8.2e-40 136.6 17.1 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family ECH PF00378.15 gi|452207789|ref|YP_007487911.1| - 1.4e-45 155.3 0.0 7.5e-44 149.6 0.0 2.0 1 1 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family DUF2892 PF11127.3 gi|452207790|ref|YP_007487912.1| - 2.7e-15 55.9 2.6 3.2e-15 55.7 1.8 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2892) IncA PF04156.9 gi|452207790|ref|YP_007487912.1| - 0.19 11.3 5.3 0.19 11.2 3.7 1.0 1 0 0 1 1 1 0 IncA protein DUF3040 PF11239.3 gi|452207790|ref|YP_007487912.1| - 0.23 11.5 2.7 0.27 11.3 1.9 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3040) MS_channel PF00924.13 gi|452207791|ref|YP_007487913.1| - 7.9e-39 133.1 0.2 1.1e-38 132.6 0.2 1.2 1 0 0 1 1 1 1 Mechanosensitive ion channel ABC2_membrane_4 PF12730.2 gi|452207791|ref|YP_007487913.1| - 0.0017 17.5 6.1 0.0022 17.1 4.3 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein Tetraspannin PF00335.15 gi|452207791|ref|YP_007487913.1| - 0.1 11.8 5.0 0.15 11.3 3.5 1.2 1 0 0 1 1 1 0 Tetraspanin family FA_desaturase PF00487.19 gi|452207791|ref|YP_007487913.1| - 0.72 9.2 2.2 1.1 8.6 1.5 1.2 1 0 0 1 1 1 0 Fatty acid desaturase DUF2207 PF09972.4 gi|452207791|ref|YP_007487913.1| - 1.3 7.4 5.1 2.2 6.7 1.3 2.1 2 0 0 2 2 2 0 Predicted membrane protein (DUF2207) YcaO PF02624.11 gi|452207792|ref|YP_007487914.1| - 4.5e-56 190.7 4.2 4.5e-56 190.7 2.9 1.4 2 0 0 2 2 2 1 YcaO-like family SHMT PF00464.14 gi|452207794|ref|YP_007487916.1| - 2.7e-150 500.2 0.0 3.2e-150 499.9 0.0 1.0 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Beta_elim_lyase PF01212.16 gi|452207794|ref|YP_007487916.1| - 1e-05 24.8 0.0 0.00023 20.4 0.0 2.2 1 1 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.12 gi|452207794|ref|YP_007487916.1| - 0.011 14.8 0.9 0.018 14.0 0.3 1.7 2 0 0 2 2 2 0 DegT/DnrJ/EryC1/StrS aminotransferase family Trypsin_2 PF13365.1 gi|452207794|ref|YP_007487916.1| - 0.012 15.5 0.1 0.02 14.8 0.0 1.6 1 1 0 1 1 1 0 Trypsin-like peptidase domain DoxX_3 PF13781.1 gi|452207795|ref|YP_007487917.1| - 9.9e-06 25.8 3.1 1.2e-05 25.6 1.2 1.7 1 1 1 2 2 2 1 DoxX-like family DoxX PF07681.7 gi|452207795|ref|YP_007487917.1| - 2.3e-05 24.7 6.2 4e-05 23.9 4.3 1.4 1 0 0 1 1 1 1 DoxX MauE PF07291.6 gi|452207795|ref|YP_007487917.1| - 0.0069 16.0 5.7 0.0091 15.6 4.0 1.1 1 0 0 1 1 1 1 Methylamine utilisation protein MauE DoxX_2 PF13564.1 gi|452207795|ref|YP_007487917.1| - 0.0085 16.0 6.8 0.0085 16.0 4.7 1.5 2 0 0 2 2 2 1 DoxX-like family DUF308 PF03729.8 gi|452207795|ref|YP_007487917.1| - 0.15 12.0 2.6 3.7 7.6 0.0 2.7 2 1 1 3 3 3 0 Short repeat of unknown function (DUF308) Pyr_redox_2 PF07992.9 gi|452207796|ref|YP_007487918.1| - 1e-35 123.4 3.3 2.9e-17 63.2 0.0 4.2 2 1 1 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|452207796|ref|YP_007487918.1| - 4.9e-22 78.1 3.2 2.3e-18 66.3 0.5 3.3 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|452207796|ref|YP_007487918.1| - 5.1e-13 48.6 10.4 0.0004 19.3 1.9 4.2 3 1 1 4 4 4 3 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|452207796|ref|YP_007487918.1| - 1.6e-09 37.6 1.9 0.0015 18.5 0.1 2.9 2 1 0 2 2 2 2 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.1 gi|452207796|ref|YP_007487918.1| - 5.1e-08 33.2 0.1 0.00011 22.3 0.0 3.2 2 1 1 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|452207796|ref|YP_007487918.1| - 9.6e-08 32.0 0.0 2.1e-07 30.9 0.0 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HI0933_like PF03486.9 gi|452207796|ref|YP_007487918.1| - 6e-06 24.9 0.5 0.075 11.4 0.0 3.7 3 1 1 4 4 4 2 HI0933-like protein 3HCDH_N PF02737.13 gi|452207796|ref|YP_007487918.1| - 5.1e-05 23.0 0.7 9.3e-05 22.1 0.5 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Lycopene_cycl PF05834.7 gi|452207796|ref|YP_007487918.1| - 0.0009 18.2 0.7 0.29 10.0 0.0 2.9 2 1 1 3 3 3 1 Lycopene cyclase protein NAD_binding_2 PF03446.10 gi|452207796|ref|YP_007487918.1| - 0.0023 17.8 0.2 0.0043 16.9 0.2 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase GIDA PF01134.17 gi|452207796|ref|YP_007487918.1| - 0.0023 16.8 1.9 0.12 11.2 0.6 2.6 3 0 0 3 3 3 1 Glucose inhibited division protein A NAD_Gly3P_dh_N PF01210.18 gi|452207796|ref|YP_007487918.1| - 0.0076 15.9 0.1 0.044 13.5 0.0 2.1 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Thi4 PF01946.12 gi|452207796|ref|YP_007487918.1| - 0.0078 15.3 0.2 1.5 7.8 0.0 2.3 2 0 0 2 2 2 1 Thi4 family UDPG_MGDP_dh_N PF03721.9 gi|452207796|ref|YP_007487918.1| - 0.0098 15.2 0.3 0.056 12.8 0.1 2.1 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_9 PF13454.1 gi|452207796|ref|YP_007487918.1| - 0.015 15.0 3.6 5.3 6.7 0.0 3.7 3 1 1 4 4 4 0 FAD-NAD(P)-binding NAD_binding_7 PF13241.1 gi|452207796|ref|YP_007487918.1| - 0.026 14.7 0.3 3.5 7.9 0.1 2.5 2 0 0 2 2 2 0 Putative NAD(P)-binding 2-Hacid_dh_C PF02826.14 gi|452207796|ref|YP_007487918.1| - 0.03 13.4 0.0 0.061 12.4 0.0 1.5 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ApbA PF02558.11 gi|452207796|ref|YP_007487918.1| - 0.034 13.6 0.4 0.43 10.0 0.2 2.4 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA FAD_oxidored PF12831.2 gi|452207796|ref|YP_007487918.1| - 0.052 12.6 5.6 0.11 11.5 0.0 3.2 3 1 0 4 4 4 0 FAD dependent oxidoreductase NmrA PF05368.8 gi|452207796|ref|YP_007487918.1| - 0.17 11.1 0.3 0.25 10.5 0.2 1.2 1 0 0 1 1 1 0 NmrA-like family FAD_binding_3 PF01494.14 gi|452207796|ref|YP_007487918.1| - 4.9 6.1 9.7 0.083 11.9 0.8 2.2 3 0 0 3 3 3 0 FAD binding domain THF_DHG_CYH_C PF02882.14 gi|452207797|ref|YP_007487919.1| - 8.1e-69 229.7 0.8 1e-68 229.4 0.5 1.1 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain THF_DHG_CYH PF00763.18 gi|452207797|ref|YP_007487919.1| - 2.1e-36 124.5 0.0 3.3e-36 123.8 0.0 1.3 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain NUDIX PF00293.23 gi|452207798|ref|YP_007487920.1| - 1.6e-13 50.4 1.0 2.1e-13 50.0 0.7 1.1 1 0 0 1 1 1 1 NUDIX domain HypA PF01155.14 gi|452207799|ref|YP_007487921.1| - 0.0035 17.0 0.5 0.0057 16.3 0.3 1.3 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family Zn_Tnp_IS1595 PF12760.2 gi|452207799|ref|YP_007487921.1| - 0.022 14.5 1.7 4.2 7.2 0.3 2.5 2 0 0 2 2 2 0 Transposase zinc-ribbon domain DZR PF12773.2 gi|452207799|ref|YP_007487921.1| - 0.022 14.5 0.9 0.039 13.7 0.6 1.3 1 0 0 1 1 1 0 Double zinc ribbon UPF0547 PF10571.4 gi|452207799|ref|YP_007487921.1| - 0.033 13.8 0.6 0.056 13.1 0.4 1.3 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 zf-HYPF PF07503.7 gi|452207799|ref|YP_007487921.1| - 0.1 12.0 1.3 0.9 9.0 0.3 2.2 1 1 1 2 2 2 0 HypF finger DUF1451 PF07295.6 gi|452207799|ref|YP_007487921.1| - 0.11 12.2 0.4 0.27 11.0 0.3 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1451) Ribosomal_S14 PF00253.16 gi|452207799|ref|YP_007487921.1| - 0.13 11.6 1.3 0.24 10.7 0.5 1.8 1 1 1 2 2 2 0 Ribosomal protein S14p/S29e zf-C2H2_3 PF13878.1 gi|452207799|ref|YP_007487921.1| - 0.14 11.7 2.2 4.7 6.8 0.1 2.3 1 1 1 2 2 2 0 zinc-finger of acetyl-transferase ESCO TF_Zn_Ribbon PF08271.7 gi|452207799|ref|YP_007487921.1| - 0.21 10.9 1.5 1.2 8.5 1.0 2.1 1 1 1 2 2 2 0 TFIIB zinc-binding zf-ribbon_3 PF13248.1 gi|452207799|ref|YP_007487921.1| - 2.6 7.3 4.8 7 5.9 0.3 2.1 1 1 1 2 2 2 0 zinc-ribbon domain Asparaginase PF00710.15 gi|452207800|ref|YP_007487922.1| - 1.1e-64 218.3 0.0 1.3e-64 218.0 0.0 1.0 1 0 0 1 1 1 1 Asparaginase PadR PF03551.9 gi|452207802|ref|YP_007487924.1| - 1e-16 60.4 0.7 1.2e-16 60.1 0.5 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_27 PF13463.1 gi|452207802|ref|YP_007487924.1| - 0.00028 21.1 0.1 0.00032 20.9 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain DUF1495 PF07381.6 gi|452207802|ref|YP_007487924.1| - 0.0027 17.3 0.0 0.004 16.7 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) HTH_45 PF14947.1 gi|452207802|ref|YP_007487924.1| - 0.0041 16.8 0.1 0.0054 16.5 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix MarR_2 PF12802.2 gi|452207802|ref|YP_007487924.1| - 0.0049 16.5 0.4 0.81 9.4 0.1 2.3 2 0 0 2 2 2 2 MarR family HTH_34 PF13601.1 gi|452207802|ref|YP_007487924.1| - 0.024 14.6 0.0 0.029 14.3 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain HemN_C PF06969.11 gi|452207802|ref|YP_007487924.1| - 0.085 12.9 0.1 0.15 12.1 0.0 1.5 1 1 0 1 1 1 0 HemN C-terminal domain TrmB PF01978.14 gi|452207802|ref|YP_007487924.1| - 0.12 12.1 0.1 0.17 11.6 0.0 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DUF357 PF04010.8 gi|452207803|ref|YP_007487925.1| - 2.3e-29 100.9 0.1 2.7e-29 100.6 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF357) DUF1470 PF07336.6 gi|452207803|ref|YP_007487925.1| - 0.22 11.8 2.1 0.27 11.5 1.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1470) Met_10 PF02475.11 gi|452207804|ref|YP_007487926.1| - 9.5e-57 191.8 0.0 1.3e-56 191.4 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_26 PF13659.1 gi|452207804|ref|YP_007487926.1| - 1.8e-11 44.1 1.0 7.6e-11 42.0 0.3 2.3 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|452207804|ref|YP_007487926.1| - 8.8e-10 39.1 0.3 4.7e-09 36.8 0.1 2.2 2 0 0 2 2 2 1 Methyltransferase domain UPF0020 PF01170.13 gi|452207804|ref|YP_007487926.1| - 2.3e-08 33.7 0.0 3.8e-08 33.1 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 MTS PF05175.9 gi|452207804|ref|YP_007487926.1| - 1.5e-07 30.9 0.0 2.6e-07 30.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.1 gi|452207804|ref|YP_007487926.1| - 4.1e-06 26.4 0.0 5.7e-06 25.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|452207804|ref|YP_007487926.1| - 5.1e-06 25.8 0.1 1.4e-05 24.3 0.0 1.7 2 0 0 2 2 2 1 Ribosomal protein L11 methyltransferase (PrmA) Cons_hypoth95 PF03602.10 gi|452207804|ref|YP_007487926.1| - 2.5e-05 23.7 0.0 4.6e-05 22.8 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_15 PF09445.5 gi|452207804|ref|YP_007487926.1| - 3.8e-05 23.2 0.0 5.5e-05 22.7 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_25 PF13649.1 gi|452207804|ref|YP_007487926.1| - 0.00032 21.0 0.0 0.00095 19.4 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|452207804|ref|YP_007487926.1| - 0.0017 18.8 0.0 0.0044 17.4 0.0 1.7 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|452207804|ref|YP_007487926.1| - 0.003 17.2 0.0 0.0083 15.8 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_24 PF13578.1 gi|452207804|ref|YP_007487926.1| - 0.017 15.9 0.3 0.12 13.2 0.1 2.2 2 0 0 2 2 2 0 Methyltransferase domain N6_N4_Mtase PF01555.13 gi|452207804|ref|YP_007487926.1| - 0.093 12.2 0.0 0.14 11.6 0.0 1.2 1 0 0 1 1 1 0 DNA methylase TRM PF02005.11 gi|452207804|ref|YP_007487926.1| - 0.13 11.2 0.0 0.19 10.6 0.0 1.2 1 0 0 1 1 1 0 N2,N2-dimethylguanosine tRNA methyltransferase DUF2298 PF10060.4 gi|452207805|ref|YP_007487927.1| - 2.1e-85 287.3 16.5 3.4e-85 286.6 11.4 1.3 1 0 0 1 1 1 1 Uncharacterized membrane protein (DUF2298) ABC_tran PF00005.22 gi|452207806|ref|YP_007487928.1| - 3.2e-31 108.4 0.0 4.8e-31 107.8 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|452207806|ref|YP_007487928.1| - 3.3e-08 33.8 0.0 0.00055 20.0 0.0 2.1 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|452207806|ref|YP_007487928.1| - 1.6e-05 24.2 0.0 0.00012 21.3 0.0 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|452207806|ref|YP_007487928.1| - 0.0051 16.3 0.0 0.01 15.3 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain NAD_binding_7 PF13241.1 gi|452207806|ref|YP_007487928.1| - 0.0096 16.1 0.3 0.028 14.6 0.0 1.8 2 0 0 2 2 2 1 Putative NAD(P)-binding AAA_23 PF13476.1 gi|452207806|ref|YP_007487928.1| - 0.011 16.0 0.0 0.014 15.7 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|452207806|ref|YP_007487928.1| - 0.016 14.5 0.0 0.044 13.1 0.0 1.7 1 0 0 1 1 1 0 AAA domain SbcCD_C PF13558.1 gi|452207806|ref|YP_007487928.1| - 0.023 14.6 0.2 0.17 11.8 0.1 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_16 PF13191.1 gi|452207806|ref|YP_007487928.1| - 0.046 13.7 6.5 0.55 10.1 4.5 2.3 1 1 0 1 1 1 0 AAA ATPase domain AAA_22 PF13401.1 gi|452207806|ref|YP_007487928.1| - 0.047 13.8 0.2 0.24 11.5 0.0 2.0 2 0 0 2 2 2 0 AAA domain ABC_ATPase PF09818.4 gi|452207806|ref|YP_007487928.1| - 0.052 12.1 0.1 6.3 5.2 0.0 2.2 2 0 0 2 2 2 0 Predicted ATPase of the ABC class AAA PF00004.24 gi|452207806|ref|YP_007487928.1| - 0.054 13.6 0.0 0.23 11.6 0.0 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.1 gi|452207806|ref|YP_007487928.1| - 0.061 13.1 2.8 0.5 10.2 2.0 2.5 1 1 0 1 1 1 0 AAA domain Zeta_toxin PF06414.7 gi|452207806|ref|YP_007487928.1| - 0.087 11.9 0.0 0.16 11.0 0.0 1.6 1 1 0 1 1 1 0 Zeta toxin NACHT PF05729.7 gi|452207806|ref|YP_007487928.1| - 0.1 12.2 0.3 0.56 9.8 0.0 2.0 2 0 0 2 2 2 0 NACHT domain UPF0079 PF02367.12 gi|452207806|ref|YP_007487928.1| - 0.11 12.1 0.0 0.29 10.7 0.0 1.6 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 FecCD PF01032.13 gi|452207807|ref|YP_007487929.1| - 5.2e-90 301.4 34.2 6.6e-90 301.0 23.7 1.1 1 0 0 1 1 1 1 FecCD transport family ABC-3 PF00950.12 gi|452207807|ref|YP_007487929.1| - 7.6e-05 22.1 16.1 7.6e-05 22.1 11.1 1.8 2 1 0 2 2 2 1 ABC 3 transport family Peripla_BP_2 PF01497.13 gi|452207808|ref|YP_007487930.1| - 3.2e-27 95.1 1.8 4.8e-27 94.6 1.2 1.3 1 0 0 1 1 1 1 Periplasmic binding protein SRP19 PF01922.12 gi|452207809|ref|YP_007487931.1| - 5e-26 91.1 0.0 5.5e-26 90.9 0.0 1.0 1 0 0 1 1 1 1 SRP19 protein Gar1 PF04410.9 gi|452207810|ref|YP_007487932.1| - 1e-05 25.0 0.0 1e-05 25.0 0.0 1.0 1 0 0 1 1 1 1 Gar1/Naf1 RNA binding region DUF1119 PF06550.6 gi|452207811|ref|YP_007487933.1| - 4e-84 282.0 17.4 1.1e-83 280.6 12.1 1.6 1 1 0 1 1 1 1 Protein of unknown function (DUF1119) Peptidase_A22B PF04258.8 gi|452207811|ref|YP_007487933.1| - 0.0018 17.7 12.1 0.0036 16.8 0.8 3.1 2 1 1 3 3 3 2 Signal peptide peptidase UNC-93 PF05978.11 gi|452207811|ref|YP_007487933.1| - 0.21 11.0 4.9 0.38 10.2 3.4 1.4 1 0 0 1 1 1 0 Ion channel regulatory protein UNC-93 OCD_Mu_crystall PF02423.10 gi|452207812|ref|YP_007487934.1| - 5.3e-54 183.0 4.6 6e-54 182.9 3.2 1.1 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family Shikimate_DH PF01488.15 gi|452207812|ref|YP_007487934.1| - 0.0003 20.8 0.0 0.00046 20.2 0.0 1.2 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase F420_oxidored PF03807.12 gi|452207812|ref|YP_007487934.1| - 0.00073 19.9 0.2 0.0013 19.0 0.1 1.4 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent GFO_IDH_MocA PF01408.17 gi|452207812|ref|YP_007487934.1| - 0.01 16.3 0.7 0.02 15.3 0.2 1.7 2 0 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold TPP_enzyme_C PF02775.16 gi|452207813|ref|YP_007487935.1| - 9.5e-32 109.6 0.4 1.5e-31 109.0 0.3 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.3 gi|452207813|ref|YP_007487935.1| - 6.9e-13 48.3 0.2 1.6e-12 47.1 0.1 1.6 1 0 0 1 1 1 1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal DUF35_N PF12172.3 gi|452207814|ref|YP_007487936.1| - 0.056 13.3 0.5 0.056 13.3 0.4 1.8 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Zn-ribbon_8 PF09723.5 gi|452207814|ref|YP_007487936.1| - 0.17 11.8 2.5 0.36 10.8 1.7 1.6 1 0 0 1 1 1 0 Zinc ribbon domain zinc_ribbon_4 PF13717.1 gi|452207814|ref|YP_007487936.1| - 0.21 11.2 2.2 3.3 7.4 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain HypA PF01155.14 gi|452207814|ref|YP_007487936.1| - 0.41 10.3 1.7 0.45 10.2 0.4 1.6 2 0 0 2 2 2 0 Hydrogenase expression/synthesis hypA family zf-RING_3 PF14369.1 gi|452207814|ref|YP_007487936.1| - 1.6 8.7 5.2 3 7.9 3.6 1.4 1 0 0 1 1 1 0 zinc-finger zinc_ribbon_5 PF13719.1 gi|452207814|ref|YP_007487936.1| - 3 7.5 5.9 3.4 7.3 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain UPF0051 PF01458.12 gi|452207815|ref|YP_007487937.1| - 6.6e-71 238.4 0.6 1.1e-70 237.6 0.4 1.3 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) Pyr_redox_2 PF07992.9 gi|452207817|ref|YP_007487939.1| - 1e-24 87.5 0.5 1.5e-24 87.0 0.3 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|452207817|ref|YP_007487939.1| - 3.4e-17 62.6 0.4 1.7e-14 53.9 0.1 2.4 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|452207817|ref|YP_007487939.1| - 1.3e-08 35.1 0.0 7.8e-06 26.0 0.0 2.5 2 1 1 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|452207817|ref|YP_007487939.1| - 3.9e-06 26.0 2.7 0.0094 14.8 0.0 2.9 2 1 0 3 3 3 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|452207817|ref|YP_007487939.1| - 4.4e-06 25.7 0.2 0.00077 18.4 0.0 2.6 2 1 0 3 3 3 2 FAD binding domain NAD_binding_8 PF13450.1 gi|452207817|ref|YP_007487939.1| - 0.00016 21.6 0.0 0.00062 19.7 0.0 2.0 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FAD_oxidored PF12831.2 gi|452207817|ref|YP_007487939.1| - 0.0032 16.6 0.5 0.0067 15.5 0.1 1.7 2 0 0 2 2 2 1 FAD dependent oxidoreductase NAD_binding_7 PF13241.1 gi|452207817|ref|YP_007487939.1| - 0.0041 17.3 0.0 0.024 14.9 0.0 2.1 2 0 0 2 2 2 1 Putative NAD(P)-binding GIDA PF01134.17 gi|452207817|ref|YP_007487939.1| - 0.006 15.4 1.4 0.47 9.2 0.3 2.9 2 1 1 3 3 3 1 Glucose inhibited division protein A HI0933_like PF03486.9 gi|452207817|ref|YP_007487939.1| - 0.14 10.5 0.8 1.2 7.5 0.0 2.5 4 0 0 4 4 4 0 HI0933-like protein MMPL PF03176.10 gi|452207818|ref|YP_007487940.1| - 1.4e-34 119.3 33.1 1.5e-18 66.5 3.7 2.9 2 1 0 2 2 2 2 MMPL family ACR_tran PF00873.14 gi|452207818|ref|YP_007487940.1| - 8.1e-05 20.2 22.5 9.9e-05 19.9 6.1 2.5 2 0 0 2 2 2 2 AcrB/AcrD/AcrF family Patched PF02460.13 gi|452207818|ref|YP_007487940.1| - 0.55 8.0 20.7 0.2 9.5 4.0 2.1 2 0 0 2 2 2 0 Patched family NPCBM_assoc PF10633.4 gi|452207819|ref|YP_007487941.1| - 1.4e-14 53.8 17.6 0.00021 21.2 0.3 6.9 5 3 0 5 5 5 4 NPCBM-associated, NEW3 domain of alpha-galactosidase CARDB PF07705.6 gi|452207819|ref|YP_007487941.1| - 2.2e-12 46.8 0.9 0.019 15.0 0.0 4.2 4 0 0 4 4 4 3 CARDB Transglut_C PF00927.17 gi|452207819|ref|YP_007487941.1| - 8.5e-08 32.2 0.0 0.051 13.6 0.0 3.5 3 1 0 3 3 3 2 Transglutaminase family, C-terminal ig like domain TRAP_beta PF05753.9 gi|452207819|ref|YP_007487941.1| - 4.5e-07 29.2 0.1 0.0067 15.6 0.0 3.2 3 0 0 3 3 3 2 Translocon-associated protein beta (TRAPB) DUF11 PF01345.13 gi|452207819|ref|YP_007487941.1| - 1.7e-06 27.9 6.4 0.063 13.3 0.1 4.5 4 1 0 4 4 4 2 Domain of unknown function DUF11 Fn3-like PF14310.1 gi|452207819|ref|YP_007487941.1| - 0.00023 21.0 4.6 7.3 6.6 0.0 5.7 7 0 0 7 7 7 1 Fibronectin type III-like domain DUF4352 PF11611.3 gi|452207819|ref|YP_007487941.1| - 0.0007 19.7 0.7 10 6.2 0.0 4.8 4 2 0 4 4 4 1 Domain of unknown function (DUF4352) BsuPI PF12690.2 gi|452207819|ref|YP_007487941.1| - 0.038 13.7 0.4 19 5.0 0.0 4.4 5 0 0 5 5 5 0 Intracellular proteinase inhibitor Alpha_adaptinC2 PF02883.15 gi|452207819|ref|YP_007487941.1| - 0.042 14.1 0.0 6.1 7.2 0.0 3.2 3 0 0 3 3 3 0 Adaptin C-terminal domain DUF3639 PF12341.3 gi|452207821|ref|YP_007487943.1| - 0.074 13.0 3.2 0.077 13.0 0.7 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3639) DUF202 PF02656.10 gi|452207821|ref|YP_007487943.1| - 0.11 12.6 2.8 0.21 11.8 1.9 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF202) MreB_Mbl PF06723.8 gi|452207822|ref|YP_007487944.1| - 1.1e-05 24.2 0.0 1.9e-05 23.4 0.0 1.4 1 1 0 1 1 1 1 MreB/Mbl protein BcrAD_BadFG PF01869.15 gi|452207822|ref|YP_007487944.1| - 0.0012 18.2 0.1 0.073 12.3 0.0 2.5 3 0 0 3 3 3 2 BadF/BadG/BcrA/BcrD ATPase family DNA_gyraseB PF00204.20 gi|452207822|ref|YP_007487944.1| - 0.15 11.2 0.0 0.24 10.6 0.0 1.2 1 0 0 1 1 1 0 DNA gyrase B ATP-synt_C PF00137.16 gi|452207823|ref|YP_007487945.1| - 0.23 11.4 2.5 0.28 11.1 0.2 2.1 2 0 0 2 2 2 0 ATP synthase subunit C NIF3 PF01784.13 gi|452207824|ref|YP_007487946.1| - 9.5e-45 153.0 0.0 1.2e-44 152.7 0.0 1.0 1 0 0 1 1 1 1 NIF3 (NGG1p interacting factor 3) Nitro_FeMo-Co PF02579.12 gi|452207824|ref|YP_007487946.1| - 0.062 13.3 0.8 0.17 11.9 0.0 2.0 2 0 0 2 2 2 0 Dinitrogenase iron-molybdenum cofactor Fe-ADH_2 PF13685.1 gi|452207825|ref|YP_007487947.1| - 4.1e-59 199.8 0.8 4.9e-59 199.6 0.6 1.1 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.14 gi|452207825|ref|YP_007487947.1| - 7e-24 84.1 5.8 9.9e-24 83.6 4.0 1.2 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.15 gi|452207825|ref|YP_007487947.1| - 1.8e-12 46.7 0.2 8.4e-12 44.5 0.1 1.8 1 1 0 1 1 1 1 3-dehydroquinate synthase Epimerase PF01370.16 gi|452207826|ref|YP_007487948.1| - 2.6e-34 118.6 0.4 2.4e-32 112.2 0.3 2.1 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.1 gi|452207826|ref|YP_007487948.1| - 4.1e-11 43.2 0.1 6.8e-11 42.5 0.1 1.3 1 0 0 1 1 1 1 NADH(P)-binding 3Beta_HSD PF01073.14 gi|452207826|ref|YP_007487948.1| - 3.2e-08 32.6 0.0 6e-06 25.1 0.0 2.1 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.12 gi|452207826|ref|YP_007487948.1| - 2.7e-07 29.7 0.0 0.01 14.7 0.0 2.1 2 0 0 2 2 2 2 RmlD substrate binding domain NAD_binding_4 PF07993.7 gi|452207826|ref|YP_007487948.1| - 0.0014 17.6 0.0 0.049 12.5 0.0 2.1 2 0 0 2 2 2 1 Male sterility protein adh_short PF00106.20 gi|452207826|ref|YP_007487948.1| - 0.017 15.0 0.1 0.077 12.9 0.0 2.0 1 1 1 2 2 2 0 short chain dehydrogenase TrkA_N PF02254.13 gi|452207826|ref|YP_007487948.1| - 0.071 13.1 0.0 0.12 12.3 0.0 1.3 1 0 0 1 1 1 0 TrkA-N domain Tubulin PF00091.20 gi|452207827|ref|YP_007487949.1| - 3e-23 82.7 0.0 6.5e-23 81.6 0.0 1.6 1 0 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain Tubulin PF00091.20 gi|452207828|ref|YP_007487950.1| - 7.1e-19 68.4 0.0 2e-18 66.9 0.0 1.7 2 0 0 2 2 2 1 Tubulin/FtsZ family, GTPase domain Tubulin_2 PF13809.1 gi|452207828|ref|YP_007487950.1| - 0.16 10.8 2.7 2.5 6.9 0.1 2.2 2 0 0 2 2 2 0 Tubulin like Response_reg PF00072.19 gi|452207830|ref|YP_007487952.1| - 5.5e-16 58.5 0.1 9.1e-16 57.8 0.1 1.4 1 0 0 1 1 1 1 Response regulator receiver domain HalX PF08663.5 gi|452207830|ref|YP_007487952.1| - 4.4e-09 36.2 0.2 1e-08 35.0 0.1 1.6 1 0 0 1 1 1 1 HalX domain HTH_10 PF04967.7 gi|452207831|ref|YP_007487953.1| - 9.2e-16 57.1 0.0 2.3e-15 55.8 0.0 1.8 1 0 0 1 1 1 1 HTH DNA binding domain GAF_2 PF13185.1 gi|452207831|ref|YP_007487953.1| - 2.1e-12 47.7 4.6 6.1e-12 46.2 0.4 3.0 3 0 0 3 3 3 1 GAF domain GAF_3 PF13492.1 gi|452207831|ref|YP_007487953.1| - 6.3e-09 36.0 0.4 2.9e-08 33.8 0.1 2.3 2 0 0 2 2 2 1 GAF domain PAS_4 PF08448.5 gi|452207831|ref|YP_007487953.1| - 1.8e-05 24.6 0.2 1.8e-05 24.6 0.1 3.2 2 1 1 3 3 3 1 PAS fold GAF PF01590.21 gi|452207831|ref|YP_007487953.1| - 4e-05 23.7 0.8 0.00012 22.1 0.2 2.1 2 0 0 2 2 2 1 GAF domain PAS_9 PF13426.1 gi|452207831|ref|YP_007487953.1| - 6.8e-05 23.1 0.0 0.00023 21.4 0.0 2.0 1 1 0 1 1 1 1 PAS domain GerE PF00196.14 gi|452207831|ref|YP_007487953.1| - 0.00018 20.7 0.0 0.001 18.3 0.0 2.2 1 1 0 1 1 1 1 Bacterial regulatory proteins, luxR family PAS PF00989.19 gi|452207831|ref|YP_007487953.1| - 0.00063 19.4 0.1 0.0018 18.0 0.0 1.8 2 0 0 2 2 2 1 PAS fold HTH_20 PF12840.2 gi|452207831|ref|YP_007487953.1| - 0.0025 17.5 0.3 0.012 15.4 0.0 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain PAS_8 PF13188.1 gi|452207831|ref|YP_007487953.1| - 0.011 15.5 0.0 0.036 13.9 0.0 1.9 1 0 0 1 1 1 0 PAS domain HTH_24 PF13412.1 gi|452207831|ref|YP_007487953.1| - 0.013 14.9 0.4 0.052 12.9 0.0 2.2 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_23 PF13384.1 gi|452207831|ref|YP_007487953.1| - 0.017 14.7 0.3 0.62 9.7 0.0 2.8 2 0 0 2 2 2 0 Homeodomain-like domain DUF87 PF01935.12 gi|452207831|ref|YP_007487953.1| - 0.086 12.6 0.1 0.35 10.6 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function DUF87 HTH_5 PF01022.15 gi|452207831|ref|YP_007487953.1| - 0.12 12.0 0.0 0.26 10.9 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HATPase_c PF02518.21 gi|452207832|ref|YP_007487954.1| - 1.2e-16 60.3 0.2 5.4e-16 58.2 0.2 2.0 1 1 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|452207832|ref|YP_007487954.1| - 1.9e-10 40.6 4.3 1.4e-09 37.7 0.9 2.4 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain EIN3 PF04873.8 gi|452207832|ref|YP_007487954.1| - 0.066 12.4 0.0 0.098 11.8 0.0 1.2 1 0 0 1 1 1 0 Ethylene insensitive 3 CUE PF02845.11 gi|452207832|ref|YP_007487954.1| - 0.081 12.4 0.0 0.19 11.2 0.0 1.6 1 0 0 1 1 1 0 CUE domain HTH_20 PF12840.2 gi|452207834|ref|YP_007487956.1| - 1.1e-09 37.9 0.4 1.5e-09 37.5 0.3 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|452207834|ref|YP_007487956.1| - 5.5e-09 35.5 0.1 7.9e-09 35.0 0.1 1.2 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.15 gi|452207834|ref|YP_007487956.1| - 2.8e-07 30.1 0.0 3.8e-07 29.6 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|452207834|ref|YP_007487956.1| - 4.2e-05 22.8 0.0 6.2e-05 22.3 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding DUF2513 PF10711.4 gi|452207834|ref|YP_007487956.1| - 0.0011 18.9 0.0 0.0015 18.5 0.0 1.2 1 0 0 1 1 1 1 Hypothetical protein (DUF2513) TrmB PF01978.14 gi|452207834|ref|YP_007487956.1| - 0.0025 17.4 0.0 0.0038 16.8 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|452207834|ref|YP_007487956.1| - 0.0056 16.3 0.0 0.0097 15.5 0.0 1.4 1 0 0 1 1 1 1 MarR family FaeA PF04703.7 gi|452207834|ref|YP_007487956.1| - 0.016 15.3 0.0 0.026 14.6 0.0 1.3 1 0 0 1 1 1 0 FaeA-like protein Phage_rep_org_N PF09681.5 gi|452207834|ref|YP_007487956.1| - 0.029 13.9 0.0 0.033 13.7 0.0 1.2 1 0 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) DUF2250 PF10007.4 gi|452207834|ref|YP_007487956.1| - 0.03 14.2 0.0 0.039 13.8 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HemN_C PF06969.11 gi|452207834|ref|YP_007487956.1| - 0.047 13.7 0.0 0.14 12.2 0.0 1.9 1 1 0 1 1 1 0 HemN C-terminal domain Rrf2 PF02082.15 gi|452207834|ref|YP_007487956.1| - 0.05 13.7 0.1 0.081 13.0 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator B-block_TFIIIC PF04182.7 gi|452207834|ref|YP_007487956.1| - 0.079 12.8 0.0 0.11 12.3 0.0 1.2 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC TFIIE_alpha PF02002.12 gi|452207834|ref|YP_007487956.1| - 0.08 12.4 0.0 0.11 12.0 0.0 1.2 1 0 0 1 1 1 0 TFIIE alpha subunit LexA_DNA_bind PF01726.11 gi|452207834|ref|YP_007487956.1| - 0.1 12.1 0.1 0.31 10.6 0.0 1.8 1 1 1 2 2 2 0 LexA DNA binding domain Thiolase_C PF02803.13 gi|452207835|ref|YP_007487957.1| - 1.2e-09 37.5 0.5 3.6e-09 36.1 0.3 1.8 1 0 0 1 1 1 1 Thiolase, C-terminal domain Thiolase_N PF00108.18 gi|452207835|ref|YP_007487957.1| - 2.4e-06 26.7 1.3 3.5e-05 22.9 0.1 2.2 2 0 0 2 2 2 1 Thiolase, N-terminal domain ACP_syn_III PF08545.5 gi|452207835|ref|YP_007487957.1| - 0.13 11.9 3.4 6.2 6.5 0.5 2.7 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III DUF35 PF01796.12 gi|452207836|ref|YP_007487958.1| - 1.1e-14 54.4 0.5 2.3e-14 53.3 0.4 1.5 1 0 0 1 1 1 1 DUF35 OB-fold domain DUF35_N PF12172.3 gi|452207836|ref|YP_007487958.1| - 5.7e-13 48.3 3.8 1e-12 47.5 2.7 1.4 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) AMP-binding PF00501.23 gi|452207837|ref|YP_007487959.1| - 2.4e-78 263.3 0.0 3.2e-78 262.9 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|452207837|ref|YP_007487959.1| - 1e-14 55.2 0.9 2e-14 54.2 0.6 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain TrkA_N PF02254.13 gi|452207838|ref|YP_007487960.1| - 2e-28 98.7 0.2 2.3e-28 98.5 0.1 1.0 1 0 0 1 1 1 1 TrkA-N domain NAD_binding_7 PF13241.1 gi|452207838|ref|YP_007487960.1| - 4.6e-10 39.6 0.3 5.7e-10 39.3 0.2 1.1 1 0 0 1 1 1 1 Putative NAD(P)-binding Saccharop_dh PF03435.13 gi|452207838|ref|YP_007487960.1| - 1.5e-05 24.1 0.4 1.8e-05 23.8 0.3 1.1 1 0 0 1 1 1 1 Saccharopine dehydrogenase NAD_binding_10 PF13460.1 gi|452207838|ref|YP_007487960.1| - 0.00039 20.4 1.0 0.00039 20.4 0.7 1.1 1 0 0 1 1 1 1 NADH(P)-binding Shikimate_DH PF01488.15 gi|452207838|ref|YP_007487960.1| - 0.00054 20.0 0.0 0.00064 19.8 0.0 1.1 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase XdhC_C PF13478.1 gi|452207838|ref|YP_007487960.1| - 0.0044 17.3 0.1 0.0055 17.0 0.1 1.2 1 0 0 1 1 1 1 XdhC Rossmann domain DapB_N PF01113.15 gi|452207838|ref|YP_007487960.1| - 0.013 15.3 0.4 0.021 14.7 0.2 1.5 1 1 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus NAD_Gly3P_dh_N PF01210.18 gi|452207838|ref|YP_007487960.1| - 0.026 14.2 0.0 0.034 13.8 0.0 1.2 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NmrA PF05368.8 gi|452207838|ref|YP_007487960.1| - 0.03 13.5 0.1 0.038 13.2 0.1 1.1 1 0 0 1 1 1 0 NmrA-like family NAD_binding_2 PF03446.10 gi|452207838|ref|YP_007487960.1| - 0.031 14.1 0.0 0.039 13.7 0.0 1.2 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.14 gi|452207838|ref|YP_007487960.1| - 0.041 13.0 0.1 0.072 12.2 0.0 1.5 1 1 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ThiF PF00899.16 gi|452207838|ref|YP_007487960.1| - 0.043 13.6 1.6 3.4 7.5 0.1 2.2 1 1 0 2 2 2 0 ThiF family CPSase_L_chain PF00289.17 gi|452207838|ref|YP_007487960.1| - 0.048 13.7 0.1 0.074 13.1 0.1 1.4 1 1 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, N-terminal domain Pyr_redox_2 PF07992.9 gi|452207838|ref|YP_007487960.1| - 0.06 13.2 0.0 0.065 13.0 0.0 1.2 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.13 gi|452207838|ref|YP_007487960.1| - 0.067 12.8 0.3 0.1 12.2 0.2 1.4 1 1 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Amidohydro_2 PF04909.9 gi|452207839|ref|YP_007487961.1| - 1.7e-31 109.8 5.8 1.9e-31 109.6 4.0 1.0 1 0 0 1 1 1 1 Amidohydrolase DUF442 PF04273.8 gi|452207839|ref|YP_007487961.1| - 0.1 12.4 0.8 6 6.7 0.1 2.4 2 0 0 2 2 2 0 Putative phosphatase (DUF442) MaoC_dehydratas PF01575.14 gi|452207840|ref|YP_007487962.1| - 1.5e-19 69.6 0.2 1.9e-19 69.2 0.1 1.1 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.1 gi|452207840|ref|YP_007487962.1| - 0.13 12.0 1.1 2.2 8.0 0.7 2.1 1 1 0 1 1 1 0 N-terminal half of MaoC dehydratase MM_CoA_mutase PF01642.17 gi|452207841|ref|YP_007487963.1| - 4.6e-190 632.1 0.0 5.2e-190 631.9 0.0 1.0 1 0 0 1 1 1 1 Methylmalonyl-CoA mutase 3HCDH_N PF02737.13 gi|452207842|ref|YP_007487964.1| - 3.4e-62 209.2 0.7 4.5e-62 208.8 0.5 1.1 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 3HCDH PF00725.17 gi|452207842|ref|YP_007487964.1| - 2.8e-33 114.1 0.0 1.4e-32 111.9 0.0 2.1 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NAD_binding_2 PF03446.10 gi|452207842|ref|YP_007487964.1| - 0.0031 17.3 3.0 0.0074 16.1 2.1 1.7 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase UDPG_MGDP_dh_N PF03721.9 gi|452207842|ref|YP_007487964.1| - 0.0053 16.1 0.4 0.0075 15.6 0.3 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain adh_short_C2 PF13561.1 gi|452207842|ref|YP_007487964.1| - 0.016 14.9 0.1 0.022 14.5 0.1 1.2 1 0 0 1 1 1 0 Enoyl-(Acyl carrier protein) reductase NAD_Gly3P_dh_N PF01210.18 gi|452207842|ref|YP_007487964.1| - 0.029 14.1 0.5 0.057 13.1 0.4 1.7 1 1 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus F420_oxidored PF03807.12 gi|452207842|ref|YP_007487964.1| - 0.043 14.2 2.6 0.15 12.5 1.8 1.9 1 1 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.14 gi|452207842|ref|YP_007487964.1| - 0.15 11.1 1.0 0.25 10.4 0.5 1.5 1 1 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Acyl-CoA_dh_1 PF00441.19 gi|452207843|ref|YP_007487965.1| - 5.7e-52 175.8 4.9 8.6e-52 175.2 3.4 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|452207843|ref|YP_007487965.1| - 3.1e-31 108.2 0.4 1.8e-30 105.8 0.0 2.2 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.6 gi|452207843|ref|YP_007487965.1| - 2.5e-23 82.8 9.3 2.5e-23 82.8 6.5 1.8 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.14 gi|452207843|ref|YP_007487965.1| - 3e-18 65.0 0.0 8.5e-18 63.6 0.0 1.8 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain HpaB_N PF11794.3 gi|452207843|ref|YP_007487965.1| - 0.044 13.1 0.1 2.7 7.2 0.0 2.1 2 0 0 2 2 2 0 4-hydroxyphenylacetate 3-hydroxylase N terminal SASP_gamma PF04259.9 gi|452207843|ref|YP_007487965.1| - 0.052 13.6 0.6 0.1 12.7 0.4 1.4 1 0 0 1 1 1 0 Small, acid-soluble spore protein, gamma-type IclR PF01614.13 gi|452207844|ref|YP_007487966.1| - 1.3e-29 102.4 0.0 2.7e-29 101.4 0.0 1.5 1 0 0 1 1 1 1 Bacterial transcriptional regulator HTH_IclR PF09339.5 gi|452207844|ref|YP_007487966.1| - 6.6e-12 44.8 0.2 1.4e-11 43.8 0.1 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|452207844|ref|YP_007487966.1| - 1.1e-05 24.6 0.0 0.00016 20.9 0.0 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|452207844|ref|YP_007487966.1| - 8.8e-05 22.2 0.0 0.00021 21.0 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|452207844|ref|YP_007487966.1| - 0.00026 20.5 0.0 0.00051 19.6 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|452207844|ref|YP_007487966.1| - 0.0012 18.5 0.0 0.0022 17.6 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|452207844|ref|YP_007487966.1| - 0.003 17.1 0.2 0.0081 15.8 0.1 1.8 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.7 gi|452207844|ref|YP_007487966.1| - 0.0041 16.7 0.0 0.0083 15.7 0.0 1.5 1 0 0 1 1 1 1 HTH domain RPA_C PF08784.6 gi|452207844|ref|YP_007487966.1| - 0.0089 16.4 0.0 0.016 15.6 0.0 1.4 1 0 0 1 1 1 1 Replication protein A C terminal HTH_40 PF14493.1 gi|452207844|ref|YP_007487966.1| - 0.072 13.3 0.0 0.18 12.0 0.0 1.7 2 0 0 2 2 1 0 Helix-turn-helix domain HTH_23 PF13384.1 gi|452207844|ref|YP_007487966.1| - 0.074 12.7 0.3 0.27 10.9 0.0 2.2 2 0 0 2 2 2 0 Homeodomain-like domain HTH_28 PF13518.1 gi|452207844|ref|YP_007487966.1| - 0.08 12.9 0.0 0.34 10.9 0.0 2.1 1 0 0 1 1 1 0 Helix-turn-helix domain DUF742 PF05331.6 gi|452207844|ref|YP_007487966.1| - 0.086 12.4 0.1 0.33 10.5 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF742) Rrf2 PF02082.15 gi|452207844|ref|YP_007487966.1| - 0.087 12.9 0.0 0.34 11.0 0.0 1.9 2 0 0 2 2 2 0 Transcriptional regulator Pterin_bind PF00809.17 gi|452207845|ref|YP_007487967.1| - 2.7e-68 229.4 0.0 5.5e-68 228.4 0.0 1.5 1 0 0 1 1 1 1 Pterin binding enzyme Mur_ligase_M PF08245.7 gi|452207845|ref|YP_007487967.1| - 4.3e-16 59.5 0.0 8.3e-16 58.5 0.0 1.5 1 0 0 1 1 1 1 Mur ligase middle domain Mur_ligase_C PF02875.16 gi|452207845|ref|YP_007487967.1| - 3.6e-08 33.3 0.1 2.7e-07 30.5 0.0 2.7 3 1 0 3 3 3 1 Mur ligase family, glutamate ligase domain PEP_mutase PF13714.1 gi|452207845|ref|YP_007487967.1| - 0.0092 15.2 0.3 0.095 11.9 0.0 4.6 5 0 0 5 5 5 2 Phosphoenolpyruvate phosphomutase Transcrip_reg PF01709.15 gi|452207845|ref|YP_007487967.1| - 0.087 11.9 0.0 0.34 10.0 0.0 2.0 1 1 0 1 1 1 0 Transcriptional regulator Glycos_transf_1 PF00534.15 gi|452207846|ref|YP_007487968.1| - 3.2e-14 52.7 0.0 4.7e-14 52.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|452207846|ref|YP_007487968.1| - 6.7e-14 52.3 6.3 6.7e-14 52.3 4.4 2.4 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|452207846|ref|YP_007487968.1| - 0.00072 19.3 0.0 0.0057 16.3 0.0 2.1 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Acetyltransf_1 PF00583.19 gi|452207847|ref|YP_007487969.1| - 2.9e-05 24.0 0.1 4.8e-05 23.3 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_CG PF14542.1 gi|452207847|ref|YP_007487969.1| - 0.049 13.5 0.0 0.08 12.8 0.0 1.4 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase Acetyltransf_10 PF13673.1 gi|452207847|ref|YP_007487969.1| - 0.058 13.5 0.0 0.084 13.0 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Response_reg PF00072.19 gi|452207849|ref|YP_007487971.1| - 5.7e-22 77.8 0.0 1.4e-21 76.5 0.0 1.6 1 0 0 1 1 1 1 Response regulator receiver domain HATPase_c PF02518.21 gi|452207849|ref|YP_007487971.1| - 1.7e-16 59.9 0.0 3.4e-16 58.9 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.6 gi|452207849|ref|YP_007487971.1| - 1e-14 54.3 0.5 3e-14 52.8 0.1 2.0 2 0 0 2 2 2 1 PAS fold PAS_4 PF08448.5 gi|452207849|ref|YP_007487971.1| - 4.5e-12 45.9 1.0 1.3e-11 44.5 0.0 2.3 3 0 0 3 3 3 1 PAS fold PAS PF00989.19 gi|452207849|ref|YP_007487971.1| - 5.1e-11 42.3 0.0 1.3e-10 41.0 0.0 1.7 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.1 gi|452207849|ref|YP_007487971.1| - 2.9e-08 34.0 0.0 1.6e-07 31.6 0.0 2.2 2 0 0 2 2 2 1 PAS domain HisKA PF00512.20 gi|452207849|ref|YP_007487971.1| - 3.9e-08 33.1 0.3 3.9e-08 33.1 0.2 3.0 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain PAS_11 PF14598.1 gi|452207849|ref|YP_007487971.1| - 2e-06 27.7 0.0 3.6e-06 26.8 0.0 1.4 1 0 0 1 1 1 1 PAS domain HATPase_c_2 PF13581.1 gi|452207849|ref|YP_007487971.1| - 0.00033 20.4 0.7 0.0014 18.4 0.1 2.2 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain OKR_DC_1_N PF03709.10 gi|452207849|ref|YP_007487971.1| - 0.016 15.2 0.0 0.034 14.1 0.0 1.6 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, N-terminal domain REV PF00424.13 gi|452207849|ref|YP_007487971.1| - 0.43 10.5 3.1 3.5 7.5 1.3 2.3 2 0 0 2 2 2 0 REV protein (anti-repression trans-activator protein) AAA PF00004.24 gi|452207850|ref|YP_007487972.1| - 8.5e-12 45.4 0.0 2.3e-11 44.0 0.0 1.8 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|452207850|ref|YP_007487972.1| - 3.4e-07 30.4 0.2 0.00014 21.9 0.0 3.2 3 1 0 3 3 2 1 AAA domain AAA_17 PF13207.1 gi|452207850|ref|YP_007487972.1| - 1.8e-05 25.5 1.9 1.8e-05 25.5 1.3 3.2 2 1 0 2 2 1 1 AAA domain IstB_IS21 PF01695.12 gi|452207850|ref|YP_007487972.1| - 3.1e-05 23.4 0.0 5.7e-05 22.6 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_14 PF13173.1 gi|452207850|ref|YP_007487972.1| - 0.00027 20.8 0.0 0.00059 19.7 0.0 1.6 1 0 0 1 1 1 1 AAA domain RuvB_N PF05496.7 gi|452207850|ref|YP_007487972.1| - 0.00033 19.7 0.0 0.0011 18.1 0.0 1.8 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus AAA_25 PF13481.1 gi|452207850|ref|YP_007487972.1| - 0.00073 18.9 2.9 0.066 12.6 0.0 3.2 3 1 1 4 4 4 1 AAA domain AAA_19 PF13245.1 gi|452207850|ref|YP_007487972.1| - 0.00094 18.8 1.9 0.13 12.0 0.0 3.2 3 0 0 3 3 2 1 Part of AAA domain AAA_28 PF13521.1 gi|452207850|ref|YP_007487972.1| - 0.001 19.0 0.1 0.0042 17.0 0.0 2.3 2 0 0 2 2 1 1 AAA domain Viral_helicase1 PF01443.13 gi|452207850|ref|YP_007487972.1| - 0.0014 18.2 0.0 0.018 14.5 0.0 2.1 2 0 0 2 2 2 1 Viral (Superfamily 1) RNA helicase AAA_18 PF13238.1 gi|452207850|ref|YP_007487972.1| - 0.0046 17.2 2.6 0.018 15.3 0.0 2.9 3 0 0 3 3 3 1 AAA domain IPT PF01745.11 gi|452207850|ref|YP_007487972.1| - 0.0047 16.1 0.0 0.0094 15.1 0.0 1.5 1 0 0 1 1 1 1 Isopentenyl transferase DEAD PF00270.24 gi|452207850|ref|YP_007487972.1| - 0.0082 15.6 0.0 8.3 5.8 0.0 3.1 3 0 0 3 3 3 0 DEAD/DEAH box helicase AAA_33 PF13671.1 gi|452207850|ref|YP_007487972.1| - 0.01 15.7 0.0 0.01 15.7 0.0 2.7 2 2 1 3 3 3 1 AAA domain NACHT PF05729.7 gi|452207850|ref|YP_007487972.1| - 0.01 15.5 0.1 0.78 9.3 0.0 2.9 3 0 0 3 3 3 0 NACHT domain Bac_DnaA PF00308.13 gi|452207850|ref|YP_007487972.1| - 0.012 15.2 0.1 0.078 12.6 0.0 2.1 2 0 0 2 2 2 0 Bacterial dnaA protein AAA_16 PF13191.1 gi|452207850|ref|YP_007487972.1| - 0.012 15.5 0.3 0.012 15.5 0.2 3.7 2 2 1 3 3 3 0 AAA ATPase domain Rad17 PF03215.10 gi|452207850|ref|YP_007487972.1| - 0.018 13.7 0.0 1.6 7.3 0.0 2.1 2 0 0 2 2 2 0 Rad17 cell cycle checkpoint protein Zeta_toxin PF06414.7 gi|452207850|ref|YP_007487972.1| - 0.025 13.7 0.0 0.058 12.4 0.0 1.6 1 0 0 1 1 1 0 Zeta toxin AAA_5 PF07728.9 gi|452207850|ref|YP_007487972.1| - 0.042 13.5 0.0 0.13 11.9 0.0 1.9 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) DUF258 PF03193.11 gi|452207850|ref|YP_007487972.1| - 0.071 12.2 0.0 0.14 11.3 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function, DUF258 TrwB_AAD_bind PF10412.4 gi|452207850|ref|YP_007487972.1| - 0.1 11.2 0.0 8.7 4.8 0.0 2.5 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain TIP49 PF06068.8 gi|452207850|ref|YP_007487972.1| - 0.1 11.2 0.0 0.7 8.5 0.0 2.0 2 0 0 2 2 2 0 TIP49 C-terminus RNA_helicase PF00910.17 gi|452207850|ref|YP_007487972.1| - 0.13 12.4 0.0 0.32 11.2 0.0 1.7 1 0 0 1 1 1 0 RNA helicase Miro PF08477.8 gi|452207850|ref|YP_007487972.1| - 0.15 12.5 0.0 0.5 10.8 0.0 2.0 2 0 0 2 2 1 0 Miro-like protein ABC_tran PF00005.22 gi|452207851|ref|YP_007487973.1| - 2.9e-34 118.2 0.0 3.7e-34 117.9 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|452207851|ref|YP_007487973.1| - 8.6e-13 48.8 0.0 4.2e-10 40.0 0.0 2.1 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|452207851|ref|YP_007487973.1| - 1.3e-09 37.5 0.0 3.3e-07 29.7 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|452207851|ref|YP_007487973.1| - 2.4e-07 30.9 0.4 8.9e-07 29.0 0.3 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|452207851|ref|YP_007487973.1| - 4e-06 26.9 0.0 3.8e-05 23.8 0.0 2.2 1 1 0 1 1 1 1 AAA domain ABC_ATPase PF09818.4 gi|452207851|ref|YP_007487973.1| - 1.1e-05 24.3 0.1 0.058 11.9 0.1 3.0 2 1 0 2 2 2 2 Predicted ATPase of the ABC class Arch_ATPase PF01637.13 gi|452207851|ref|YP_007487973.1| - 3.8e-05 23.4 0.1 0.0019 17.9 0.0 2.1 2 0 0 2 2 2 1 Archaeal ATPase AAA_10 PF12846.2 gi|452207851|ref|YP_007487973.1| - 6.4e-05 22.5 0.0 0.0075 15.7 0.0 2.2 2 0 0 2 2 2 1 AAA-like domain AAA_29 PF13555.1 gi|452207851|ref|YP_007487973.1| - 7.4e-05 22.1 0.0 0.00016 21.1 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA PF00004.24 gi|452207851|ref|YP_007487973.1| - 0.00014 22.0 0.0 0.011 15.9 0.0 2.4 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DUF258 PF03193.11 gi|452207851|ref|YP_007487973.1| - 0.00019 20.6 0.0 0.00027 20.1 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_19 PF13245.1 gi|452207851|ref|YP_007487973.1| - 0.00023 20.8 0.1 0.0015 18.2 0.0 2.4 2 1 1 3 3 2 1 Part of AAA domain T2SE PF00437.15 gi|452207851|ref|YP_007487973.1| - 0.001 18.0 0.0 0.002 17.0 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_17 PF13207.1 gi|452207851|ref|YP_007487973.1| - 0.0013 19.5 0.4 0.0031 18.3 0.3 1.9 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|452207851|ref|YP_007487973.1| - 0.0013 18.5 0.1 0.0022 17.8 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.1 gi|452207851|ref|YP_007487973.1| - 0.0015 18.1 0.0 0.0081 15.7 0.0 2.1 2 1 0 2 2 2 1 AAA domain AAA_23 PF13476.1 gi|452207851|ref|YP_007487973.1| - 0.0017 18.7 0.0 0.0027 18.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain NB-ARC PF00931.17 gi|452207851|ref|YP_007487973.1| - 0.0017 17.2 0.1 0.0088 14.9 0.0 1.9 2 0 0 2 2 2 1 NB-ARC domain AAA_14 PF13173.1 gi|452207851|ref|YP_007487973.1| - 0.004 17.0 0.0 0.12 12.2 0.0 2.3 2 0 0 2 2 2 1 AAA domain MobB PF03205.9 gi|452207851|ref|YP_007487973.1| - 0.0065 16.1 0.0 0.017 14.8 0.0 1.7 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B NTPase_1 PF03266.10 gi|452207851|ref|YP_007487973.1| - 0.0084 15.8 0.0 0.25 11.0 0.0 2.2 2 0 0 2 2 2 1 NTPase AAA_25 PF13481.1 gi|452207851|ref|YP_007487973.1| - 0.017 14.5 0.2 0.14 11.5 0.0 2.2 2 1 0 2 2 2 0 AAA domain NACHT PF05729.7 gi|452207851|ref|YP_007487973.1| - 0.018 14.7 0.0 0.039 13.6 0.0 1.6 1 0 0 1 1 1 0 NACHT domain AAA_18 PF13238.1 gi|452207851|ref|YP_007487973.1| - 0.026 14.8 0.0 0.056 13.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|452207851|ref|YP_007487973.1| - 0.04 13.6 0.1 1.2 8.9 0.0 2.2 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) MutS_V PF00488.16 gi|452207851|ref|YP_007487973.1| - 0.041 13.2 0.0 0.07 12.5 0.0 1.3 1 0 0 1 1 1 0 MutS domain V Mg_chelatase PF01078.16 gi|452207851|ref|YP_007487973.1| - 0.043 12.9 0.0 0.092 11.8 0.0 1.5 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI MMR_HSR1 PF01926.18 gi|452207851|ref|YP_007487973.1| - 0.058 13.3 0.0 0.098 12.6 0.0 1.6 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_15 PF13175.1 gi|452207851|ref|YP_007487973.1| - 0.067 12.2 0.0 0.77 8.7 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain DUF3987 PF13148.1 gi|452207851|ref|YP_007487973.1| - 0.082 11.4 0.0 0.13 10.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3987) AAA_28 PF13521.1 gi|452207851|ref|YP_007487973.1| - 0.088 12.7 0.0 0.22 11.4 0.0 1.7 2 0 0 2 2 1 0 AAA domain Zeta_toxin PF06414.7 gi|452207851|ref|YP_007487973.1| - 0.095 11.7 0.0 0.14 11.2 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin Sigma54_activat PF00158.21 gi|452207851|ref|YP_007487973.1| - 0.098 12.1 0.1 0.93 8.9 0.0 2.1 2 0 0 2 2 2 0 Sigma-54 interaction domain Miro PF08477.8 gi|452207851|ref|YP_007487973.1| - 0.098 13.1 0.0 0.17 12.4 0.0 1.4 1 0 0 1 1 1 0 Miro-like protein PhoH PF02562.11 gi|452207851|ref|YP_007487973.1| - 0.1 11.8 0.0 0.18 11.0 0.0 1.3 1 0 0 1 1 1 0 PhoH-like protein SbcCD_C PF13558.1 gi|452207851|ref|YP_007487973.1| - 0.11 12.3 0.4 1.2 9.0 0.3 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit cobW PF02492.14 gi|452207851|ref|YP_007487973.1| - 0.12 11.7 0.0 0.24 10.8 0.0 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain APS_kinase PF01583.15 gi|452207851|ref|YP_007487973.1| - 0.13 11.9 0.0 0.26 10.9 0.0 1.5 1 0 0 1 1 1 0 Adenylylsulphate kinase BPD_transp_1 PF00528.17 gi|452207852|ref|YP_007487974.1| - 2.8e-18 66.0 5.6 2.8e-18 66.0 3.9 2.0 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_3 PF00497.15 gi|452207853|ref|YP_007487975.1| - 2e-58 197.3 2.7 2.6e-58 196.9 1.9 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 TAT_signal PF10518.4 gi|452207853|ref|YP_007487975.1| - 0.013 15.4 1.0 0.025 14.5 0.7 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence PTA_PTB PF01515.14 gi|452207854|ref|YP_007487976.1| - 1.3e-90 303.6 0.0 1.8e-90 303.2 0.0 1.2 1 0 0 1 1 1 1 Phosphate acetyl/butaryl transferase Malic_M PF03949.10 gi|452207854|ref|YP_007487976.1| - 3.4e-69 233.2 1.7 3.4e-69 233.2 1.2 1.7 2 0 0 2 2 2 1 Malic enzyme, NAD binding domain malic PF00390.14 gi|452207854|ref|YP_007487976.1| - 3.2e-31 108.3 0.1 5.8e-29 100.9 0.0 2.4 1 1 0 1 1 1 1 Malic enzyme, N-terminal domain Acyl-CoA_dh_C PF12806.2 gi|452207854|ref|YP_007487976.1| - 0.035 13.9 0.8 3.7 7.4 0.1 2.6 2 0 0 2 2 2 0 Acetyl-CoA dehydrogenase C-terminal like OrfB_IS605 PF01385.14 gi|452207855|ref|YP_007487977.1| - 3.2e-60 203.3 0.5 4.1e-60 202.9 0.4 1.1 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|452207855|ref|YP_007487977.1| - 3.9e-20 71.2 0.9 8.3e-20 70.2 0.6 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain C1_3 PF07649.7 gi|452207855|ref|YP_007487977.1| - 0.21 11.6 2.4 0.64 10.1 1.6 1.9 1 0 0 1 1 1 0 C1-like domain COX15-CtaA PF02628.10 gi|452207856|ref|YP_007487978.1| - 5e-26 91.2 24.0 5e-26 91.2 16.6 2.2 1 1 1 2 2 2 2 Cytochrome oxidase assembly protein Pterin_4a PF01329.14 gi|452207857|ref|YP_007487979.1| - 9.3e-24 83.0 0.0 9.7e-24 82.9 0.0 1.0 1 0 0 1 1 1 1 Pterin 4 alpha carbinolamine dehydratase DUF2240 PF09999.4 gi|452207859|ref|YP_007487981.1| - 2.6e-50 169.5 0.0 2.9e-50 169.4 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2240) HAD_2 PF13419.1 gi|452207861|ref|YP_007487983.1| - 5.3e-33 114.6 0.0 7.6e-33 114.1 0.0 1.2 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|452207861|ref|YP_007487983.1| - 5.5e-16 59.6 0.4 5.1e-14 53.1 0.3 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|452207861|ref|YP_007487983.1| - 2.9e-08 33.2 0.1 2.9e-08 33.2 0.1 1.8 2 0 0 2 2 2 1 HAD-hyrolase-like HAD PF12710.2 gi|452207861|ref|YP_007487983.1| - 2e-05 24.8 0.1 2.8e-05 24.3 0.1 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase OMPdecase PF00215.19 gi|452207862|ref|YP_007487984.1| - 6.6e-32 110.7 0.0 7.9e-32 110.4 0.0 1.1 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family DUF2859 PF11072.3 gi|452207862|ref|YP_007487984.1| - 0.038 13.4 0.0 0.065 12.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2859) TrmB PF01978.14 gi|452207863|ref|YP_007487985.1| - 1.8e-05 24.3 0.2 2.3e-05 23.9 0.1 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|452207863|ref|YP_007487985.1| - 3.3e-05 23.1 0.0 4.6e-05 22.7 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|452207863|ref|YP_007487985.1| - 3.4e-05 23.5 0.2 5.8e-05 22.8 0.1 1.5 2 0 0 2 2 2 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|452207863|ref|YP_007487985.1| - 0.0001 21.8 0.1 0.00013 21.5 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|452207863|ref|YP_007487985.1| - 0.00048 20.4 0.1 0.00062 20.0 0.0 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_36 PF13730.1 gi|452207863|ref|YP_007487985.1| - 0.0021 18.1 0.0 0.0048 17.0 0.0 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain MarR PF01047.17 gi|452207863|ref|YP_007487985.1| - 0.0025 17.4 0.0 0.0031 17.1 0.0 1.1 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.1 gi|452207863|ref|YP_007487985.1| - 0.0031 17.2 0.0 0.0037 17.0 0.0 1.1 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_CodY PF08222.6 gi|452207863|ref|YP_007487985.1| - 0.0061 15.8 0.0 0.0087 15.3 0.0 1.2 1 0 0 1 1 1 1 CodY helix-turn-helix domain HxlR PF01638.12 gi|452207863|ref|YP_007487985.1| - 0.016 14.8 0.0 0.018 14.6 0.0 1.1 1 0 0 1 1 1 0 HxlR-like helix-turn-helix GntR PF00392.16 gi|452207863|ref|YP_007487985.1| - 0.02 14.2 0.1 0.028 13.8 0.0 1.2 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family Sigma70_r4_2 PF08281.7 gi|452207863|ref|YP_007487985.1| - 0.03 13.7 0.1 0.056 12.9 0.1 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_5 PF01022.15 gi|452207863|ref|YP_007487985.1| - 0.049 13.3 0.0 0.076 12.6 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Rrf2 PF02082.15 gi|452207863|ref|YP_007487985.1| - 0.063 13.4 0.1 0.087 12.9 0.1 1.2 1 0 0 1 1 1 0 Transcriptional regulator TFIIE_alpha PF02002.12 gi|452207863|ref|YP_007487985.1| - 0.089 12.3 0.0 0.1 12.1 0.0 1.1 1 0 0 1 1 1 0 TFIIE alpha subunit DDE_3 PF13358.1 gi|452207864|ref|YP_007487986.1| - 3.2e-25 88.5 0.0 5.1e-25 87.9 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_33 PF13592.1 gi|452207864|ref|YP_007487986.1| - 2.9e-15 55.5 0.9 1.1e-14 53.6 0.1 2.4 3 0 0 3 3 3 1 Winged helix-turn helix HTH_29 PF13551.1 gi|452207864|ref|YP_007487986.1| - 1.1e-10 41.6 0.0 4e-10 39.8 0.0 1.9 2 0 0 2 2 2 1 Winged helix-turn helix rve PF00665.21 gi|452207864|ref|YP_007487986.1| - 3e-08 33.7 0.0 6.7e-07 29.4 0.0 2.5 2 0 0 2 2 2 1 Integrase core domain HTH_32 PF13565.1 gi|452207864|ref|YP_007487986.1| - 1.1e-06 29.3 0.7 3e-06 27.9 0.1 2.1 2 0 0 2 2 1 1 Homeodomain-like domain HTH_28 PF13518.1 gi|452207864|ref|YP_007487986.1| - 0.035 14.1 0.1 2.2 8.3 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_23 PF13384.1 gi|452207864|ref|YP_007487986.1| - 0.037 13.7 0.0 0.11 12.1 0.0 1.8 2 0 0 2 2 2 0 Homeodomain-like domain DDE_Tnp_ISAZ013 PF07592.6 gi|452207864|ref|YP_007487986.1| - 0.048 12.4 0.0 1.4 7.6 0.0 2.7 2 1 1 3 3 3 0 Rhodopirellula transposase DDE domain HTH_31 PF13560.1 gi|452207864|ref|YP_007487986.1| - 0.068 13.3 0.0 0.17 12.0 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_Tnp_4 PF13613.1 gi|452207864|ref|YP_007487986.1| - 0.11 12.0 0.0 0.26 10.8 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix of DDE superfamily endonuclease DUF1852 PF08908.6 gi|452207864|ref|YP_007487986.1| - 0.13 11.0 0.0 0.19 10.5 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1852) zinc_ribbon_4 PF13717.1 gi|452207865|ref|YP_007487987.1| - 0.052 13.2 0.2 0.079 12.6 0.1 1.4 1 0 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|452207865|ref|YP_007487987.1| - 0.063 12.8 0.2 0.1 12.2 0.1 1.4 1 0 0 1 1 1 0 zinc-ribbon domain CheC PF04509.7 gi|452207866|ref|YP_007487988.1| - 5.9e-22 77.1 0.4 7e-10 38.4 0.0 3.4 3 0 0 3 3 3 2 CheC-like family CheX PF13690.1 gi|452207866|ref|YP_007487988.1| - 1.2e-15 57.1 0.0 3.3e-07 30.0 0.0 2.4 2 0 0 2 2 2 2 Chemotaxis phosphatase CheX PALP PF00291.20 gi|452207867|ref|YP_007487989.1| - 1.7e-56 191.7 2.3 2.2e-56 191.3 1.6 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme E3_binding PF02817.12 gi|452207867|ref|YP_007487989.1| - 0.00099 18.6 2.3 1.2 8.8 0.0 4.1 4 0 0 4 4 4 2 e3 binding domain ADH_zinc_N PF00107.21 gi|452207867|ref|YP_007487989.1| - 0.041 13.4 0.1 0.11 11.9 0.1 1.8 1 0 0 1 1 1 0 Zinc-binding dehydrogenase Hexapep PF00132.19 gi|452207868|ref|YP_007487990.1| - 7.2e-21 72.7 2.9 4.2e-08 32.3 0.0 3.3 2 1 1 3 3 3 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|452207868|ref|YP_007487990.1| - 4.8e-05 22.8 1.3 0.84 9.2 0.1 4.0 2 1 2 4 4 4 2 Hexapeptide repeat of succinyl-transferase DUF2613 PF11021.3 gi|452207868|ref|YP_007487990.1| - 1.8 8.3 5.3 10 5.8 0.1 3.0 1 1 2 3 3 3 0 Protein of unknown function (DUF2613) Response_reg PF00072.19 gi|452207869|ref|YP_007487991.1| - 2.1e-21 76.0 0.0 2.4e-21 75.8 0.0 1.0 1 0 0 1 1 1 1 Response regulator receiver domain TPP_enzyme_N PF02776.13 gi|452207871|ref|YP_007487993.1| - 4.5e-53 179.2 1.7 1e-52 178.1 1.2 1.6 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.16 gi|452207871|ref|YP_007487993.1| - 1.1e-51 174.4 1.4 4.9e-51 172.3 0.0 2.5 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.17 gi|452207871|ref|YP_007487993.1| - 2e-44 150.6 2.0 4.4e-44 149.5 0.1 2.4 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, central domain Imm1 PF14430.1 gi|452207871|ref|YP_007487993.1| - 0.016 15.3 0.4 0.16 12.1 0.0 2.7 2 0 0 2 2 2 0 Immunity protein Imm1 Cpn60_TCP1 PF00118.19 gi|452207871|ref|YP_007487993.1| - 0.053 12.1 0.1 0.14 10.7 0.0 1.6 2 0 0 2 2 2 0 TCP-1/cpn60 chaperonin family CO_dh PF02552.11 gi|452207871|ref|YP_007487993.1| - 0.12 11.9 0.0 0.2 11.2 0.0 1.3 1 0 0 1 1 1 0 CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit ACT_5 PF13710.1 gi|452207872|ref|YP_007487994.1| - 1.2e-20 73.0 0.0 8.1e-20 70.3 0.0 2.1 2 0 0 2 2 2 1 ACT domain ALS_ss_C PF10369.4 gi|452207872|ref|YP_007487994.1| - 8.5e-19 67.0 0.0 1.4e-18 66.3 0.0 1.3 1 0 0 1 1 1 1 Small subunit of acetolactate synthase ACT PF01842.20 gi|452207872|ref|YP_007487994.1| - 3.7e-13 48.6 0.1 1.6e-12 46.5 0.0 2.1 3 0 0 3 3 3 1 ACT domain ACT_4 PF13291.1 gi|452207872|ref|YP_007487994.1| - 0.00015 22.0 0.0 0.00026 21.2 0.0 1.5 1 0 0 1 1 1 1 ACT domain IlvN PF07991.7 gi|452207873|ref|YP_007487995.1| - 1.5e-69 232.6 0.1 1.9e-69 232.2 0.1 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain IlvC PF01450.14 gi|452207873|ref|YP_007487995.1| - 2e-54 183.4 0.1 2.7e-54 183.0 0.0 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain F420_oxidored PF03807.12 gi|452207873|ref|YP_007487995.1| - 4.2e-07 30.2 0.0 8.5e-07 29.3 0.0 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.14 gi|452207873|ref|YP_007487995.1| - 7.4e-07 28.4 0.0 1.2e-06 27.7 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.10 gi|452207873|ref|YP_007487995.1| - 6.6e-05 22.8 0.0 0.00013 21.9 0.0 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase CoA_binding_2 PF13380.1 gi|452207873|ref|YP_007487995.1| - 0.0027 17.8 1.9 0.029 14.5 0.1 2.8 2 1 0 3 3 3 1 CoA binding domain AdoHcyase_NAD PF00670.16 gi|452207873|ref|YP_007487995.1| - 0.0046 16.8 0.1 0.0099 15.7 0.0 1.5 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain ApbA PF02558.11 gi|452207873|ref|YP_007487995.1| - 0.0075 15.7 0.0 0.013 14.9 0.0 1.5 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Nitro_FeMo-Co PF02579.12 gi|452207873|ref|YP_007487995.1| - 0.021 14.9 0.2 0.11 12.5 0.0 2.2 2 0 0 2 2 2 0 Dinitrogenase iron-molybdenum cofactor NAD_Gly3P_dh_N PF01210.18 gi|452207873|ref|YP_007487995.1| - 0.061 13.0 0.1 1 9.0 0.0 2.2 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus GFO_IDH_MocA PF01408.17 gi|452207873|ref|YP_007487995.1| - 0.067 13.7 0.3 0.21 12.1 0.0 1.8 2 0 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold Rossmann-like PF10727.4 gi|452207873|ref|YP_007487995.1| - 0.1 12.3 0.2 0.19 11.4 0.1 1.4 1 0 0 1 1 1 0 Rossmann-like domain 3HCDH_N PF02737.13 gi|452207873|ref|YP_007487995.1| - 0.19 11.3 0.9 0.97 9.0 0.0 2.2 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Aconitase PF00330.15 gi|452207875|ref|YP_007487997.1| - 3.9e-138 460.8 0.0 4.4e-138 460.6 0.0 1.0 1 0 0 1 1 1 1 Aconitase family (aconitate hydratase) Aconitase_C PF00694.14 gi|452207876|ref|YP_007487998.1| - 7e-18 64.9 0.0 1.2e-17 64.2 0.0 1.4 1 0 0 1 1 1 1 Aconitase C-terminal domain Iso_dh PF00180.15 gi|452207877|ref|YP_007487999.1| - 1.7e-90 303.4 0.0 2.1e-90 303.1 0.0 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase OsmC PF02566.14 gi|452207879|ref|YP_007488001.1| - 4.8e-17 61.9 0.1 6.6e-17 61.5 0.0 1.1 1 0 0 1 1 1 1 OsmC-like protein YbjN PF10722.4 gi|452207879|ref|YP_007488001.1| - 0.055 13.5 0.6 0.15 12.1 0.3 1.7 2 0 0 2 2 2 0 Putative bacterial sensory transduction regulator Lactamase_B_3 PF13483.1 gi|452207880|ref|YP_007488002.1| - 5.8e-21 74.8 0.1 7.4e-21 74.5 0.1 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.2 gi|452207880|ref|YP_007488002.1| - 2.6e-15 56.4 0.2 3.5e-15 56.0 0.1 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|452207880|ref|YP_007488002.1| - 1.4e-09 37.9 7.4 2.8e-09 36.8 5.1 1.7 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Acetyltransf_1 PF00583.19 gi|452207881|ref|YP_007488003.1| - 2e-13 50.1 0.3 3e-13 49.6 0.2 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|452207881|ref|YP_007488003.1| - 8e-12 45.1 0.0 2.3e-11 43.7 0.0 1.7 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|452207881|ref|YP_007488003.1| - 6.2e-10 39.2 0.3 1.4e-08 34.8 0.2 2.1 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|452207881|ref|YP_007488003.1| - 2.9e-09 36.8 0.1 2.9e-06 27.1 0.1 2.1 2 0 0 2 2 2 2 Acetyltransferase (GNAT) domain Acetyltransf_5 PF13444.1 gi|452207881|ref|YP_007488003.1| - 8.4e-05 23.0 0.1 0.00019 21.9 0.0 1.7 1 1 1 2 2 2 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|452207881|ref|YP_007488003.1| - 0.0078 15.9 0.0 0.013 15.2 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_4 PF13420.1 gi|452207881|ref|YP_007488003.1| - 0.014 15.3 0.0 0.062 13.2 0.0 1.9 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|452207881|ref|YP_007488003.1| - 0.047 13.5 0.2 0.074 12.9 0.2 1.3 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase GNAT_acetyltr_2 PF13718.1 gi|452207881|ref|YP_007488003.1| - 0.081 12.2 0.1 0.11 11.7 0.0 1.3 1 0 0 1 1 1 0 GNAT acetyltransferase 2 FAA_hydrolase PF01557.13 gi|452207882|ref|YP_007488004.1| - 7.4e-62 208.6 0.2 9.1e-62 208.3 0.1 1.0 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family CopD PF05425.8 gi|452207883|ref|YP_007488005.1| - 0.00013 22.1 6.6 0.00013 22.1 4.6 2.1 1 1 0 2 2 2 1 Copper resistance protein D NTP_transf_3 PF12804.2 gi|452207884|ref|YP_007488006.1| - 2.6e-33 115.3 0.2 3.1e-33 115.1 0.2 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain Glycos_transf_2 PF00535.21 gi|452207884|ref|YP_007488006.1| - 0.061 12.9 0.0 0.085 12.5 0.0 1.3 1 0 0 1 1 1 0 Glycosyl transferase family 2 Aminotran_1_2 PF00155.16 gi|452207885|ref|YP_007488007.1| - 3.9e-57 193.8 0.0 4.3e-57 193.7 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Alliinase_C PF04864.8 gi|452207885|ref|YP_007488007.1| - 0.00097 17.8 0.0 0.0014 17.4 0.0 1.2 1 0 0 1 1 1 1 Allinase Cys_Met_Meta_PP PF01053.15 gi|452207885|ref|YP_007488007.1| - 0.002 16.5 0.0 0.0032 15.7 0.0 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme HTH_Tnp_1 PF01527.15 gi|452207885|ref|YP_007488007.1| - 0.088 12.7 0.0 1.8 8.5 0.0 2.6 2 0 0 2 2 2 0 Transposase FTR PF01913.13 gi|452207885|ref|YP_007488007.1| - 0.13 11.9 0.0 0.27 10.9 0.0 1.5 1 0 0 1 1 1 0 Formylmethanofuran-tetrahydromethanopterin formyltransferase AAA_18 PF13238.1 gi|452207886|ref|YP_007488008.1| - 3.3e-21 75.9 0.0 4.2e-21 75.5 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|452207886|ref|YP_007488008.1| - 3.4e-13 50.4 0.1 6.1e-13 49.6 0.0 1.3 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|452207886|ref|YP_007488008.1| - 0.0001 22.1 1.1 0.18 11.6 0.1 2.2 1 1 1 2 2 2 2 AAA domain AAA_28 PF13521.1 gi|452207886|ref|YP_007488008.1| - 0.00016 21.6 2.5 0.0012 18.7 0.4 2.1 1 1 1 2 2 2 1 AAA domain NTPase_1 PF03266.10 gi|452207886|ref|YP_007488008.1| - 0.0077 15.9 0.6 0.014 15.1 0.4 1.5 1 1 0 1 1 1 1 NTPase ArgK PF03308.11 gi|452207886|ref|YP_007488008.1| - 0.017 13.9 0.7 0.044 12.5 0.1 1.8 2 0 0 2 2 2 0 ArgK protein ADK PF00406.17 gi|452207886|ref|YP_007488008.1| - 0.022 14.6 0.1 0.4 10.5 0.0 2.1 1 1 0 2 2 2 0 Adenylate kinase MobB PF03205.9 gi|452207886|ref|YP_007488008.1| - 0.042 13.5 0.4 0.07 12.8 0.3 1.4 1 1 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA PF00004.24 gi|452207886|ref|YP_007488008.1| - 0.072 13.2 0.2 0.085 13.0 0.1 1.6 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|452207886|ref|YP_007488008.1| - 0.072 13.2 0.1 0.11 12.6 0.1 1.4 1 1 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|452207886|ref|YP_007488008.1| - 0.33 10.7 4.6 0.25 11.1 1.8 1.9 2 1 0 2 2 2 0 Part of AAA domain CDP-OH_P_transf PF01066.16 gi|452207887|ref|YP_007488009.1| - 2.9e-11 43.5 5.0 4.1e-11 43.0 3.4 1.4 1 1 0 1 1 1 1 CDP-alcohol phosphatidyltransferase HTH_3 PF01381.17 gi|452207888|ref|YP_007488010.1| - 2.8e-10 39.8 0.1 3.9e-10 39.4 0.1 1.2 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.1 gi|452207888|ref|YP_007488010.1| - 1e-09 38.4 0.2 1.6e-09 37.7 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.2 gi|452207888|ref|YP_007488010.1| - 1.1e-06 28.5 0.1 1.9e-06 27.8 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.1 gi|452207888|ref|YP_007488010.1| - 0.0012 18.4 0.5 0.0018 17.8 0.4 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain SR-25 PF10500.4 gi|452207888|ref|YP_007488010.1| - 0.007 15.8 6.7 0.0088 15.5 4.6 1.2 1 0 0 1 1 1 1 Nuclear RNA-splicing-associated protein GP40 PF11025.3 gi|452207888|ref|YP_007488010.1| - 0.052 13.1 4.4 0.064 12.8 3.0 1.3 1 0 0 1 1 1 0 Glycoprotein GP40 of Cryptosporidium COPR5 PF15340.1 gi|452207888|ref|YP_007488010.1| - 0.075 13.3 1.0 0.11 12.8 0.7 1.2 1 0 0 1 1 1 0 Cooperator of PRMT5 family Macoilin PF09726.4 gi|452207888|ref|YP_007488010.1| - 0.081 11.1 3.3 0.087 11.0 2.3 1.0 1 0 0 1 1 1 0 Transmembrane protein Sigma70_r4 PF04545.11 gi|452207888|ref|YP_007488010.1| - 0.087 12.1 0.1 0.14 11.5 0.1 1.3 1 0 0 1 1 1 0 Sigma-70, region 4 DUF4428 PF14471.1 gi|452207888|ref|YP_007488010.1| - 0.11 12.2 0.8 0.2 11.4 0.5 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4428) Corona_nucleoca PF00937.13 gi|452207888|ref|YP_007488010.1| - 0.15 10.9 5.5 0.18 10.6 3.8 1.1 1 0 0 1 1 1 0 Coronavirus nucleocapsid protein Tmemb_cc2 PF10267.4 gi|452207888|ref|YP_007488010.1| - 0.18 10.3 3.3 0.22 10.0 2.3 1.1 1 0 0 1 1 1 0 Predicted transmembrane and coiled-coil 2 protein zf-TFIIB PF13453.1 gi|452207888|ref|YP_007488010.1| - 0.2 10.8 1.6 0.4 9.9 1.1 1.5 1 0 0 1 1 1 0 Transcription factor zinc-finger DnaJ_CXXCXGXG PF00684.14 gi|452207888|ref|YP_007488010.1| - 0.36 10.8 2.9 0.68 10.0 1.5 1.9 1 1 0 1 1 1 0 DnaJ central domain RAP1 PF07218.6 gi|452207888|ref|YP_007488010.1| - 1.2 7.1 5.9 1.4 6.9 4.1 1.0 1 0 0 1 1 1 0 Rhoptry-associated protein 1 (RAP-1) DUF515 PF04415.7 gi|452207888|ref|YP_007488010.1| - 1.4 7.0 5.4 1.8 6.7 3.8 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF515) Dpy19 PF10034.4 gi|452207889|ref|YP_007488011.1| - 0.1 10.7 0.3 0.13 10.3 0.2 1.0 1 0 0 1 1 1 0 Q-cell neuroblast polarisation RRN7 PF11781.3 gi|452207890|ref|YP_007488012.1| - 0.00044 19.6 1.0 0.077 12.5 0.2 2.5 3 0 0 3 3 3 2 RNA polymerase I-specific transcription initiation factor Rrn7 zf-C2HC_2 PF13913.1 gi|452207890|ref|YP_007488012.1| - 0.022 14.4 0.3 0.036 13.7 0.2 1.4 1 0 0 1 1 1 0 zinc-finger of a C2HC-type Prim_Zn_Ribbon PF08273.7 gi|452207890|ref|YP_007488012.1| - 1.6 8.8 5.6 6.8 6.8 3.9 2.0 1 1 0 1 1 1 0 Zinc-binding domain of primase-helicase DUF1610 PF07754.6 gi|452207890|ref|YP_007488012.1| - 3.6 7.8 6.1 16 5.6 2.4 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) Arch_fla_DE PF04659.8 gi|452207891|ref|YP_007488013.1| - 3.6e-27 94.0 0.0 7e-27 93.1 0.0 1.4 1 0 0 1 1 1 1 Archaeal flagella protein FlaC_arch PF05377.6 gi|452207891|ref|YP_007488013.1| - 4.1e-21 74.6 3.8 6.2e-21 74.0 2.7 1.3 1 0 0 1 1 1 1 Flagella accessory protein C (FlaC) BicD PF09730.4 gi|452207891|ref|YP_007488013.1| - 0.023 13.1 0.7 0.031 12.6 0.5 1.1 1 0 0 1 1 1 0 Microtubule-associated protein Bicaudal-D CENP-F_leu_zip PF10473.4 gi|452207891|ref|YP_007488013.1| - 0.042 13.7 0.2 0.062 13.1 0.1 1.2 1 0 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 TBPIP PF07106.8 gi|452207891|ref|YP_007488013.1| - 0.065 12.7 0.1 0.094 12.2 0.1 1.1 1 0 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) IncA PF04156.9 gi|452207891|ref|YP_007488013.1| - 0.088 12.4 0.1 0.12 11.9 0.1 1.1 1 0 0 1 1 1 0 IncA protein DUF904 PF06005.7 gi|452207891|ref|YP_007488013.1| - 0.11 12.8 0.9 0.17 12.2 0.6 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF904) bZIP_1 PF00170.16 gi|452207891|ref|YP_007488013.1| - 0.15 12.0 0.4 0.24 11.3 0.3 1.3 1 0 0 1 1 1 0 bZIP transcription factor Fib_alpha PF08702.5 gi|452207891|ref|YP_007488013.1| - 0.15 12.1 0.1 0.24 11.5 0.1 1.2 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family DUF812 PF05667.6 gi|452207891|ref|YP_007488013.1| - 0.2 10.1 0.6 0.28 9.6 0.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF812) CAMP_factor PF07373.6 gi|452207891|ref|YP_007488013.1| - 0.21 11.0 0.1 0.32 10.4 0.0 1.1 1 0 0 1 1 1 0 CAMP factor (Cfa) Packaging_FI PF14000.1 gi|452207891|ref|YP_007488013.1| - 2.5 8.3 8.7 0.056 13.6 1.0 2.0 2 0 0 2 2 2 0 DNA packaging protein FI KaiC PF06745.8 gi|452207892|ref|YP_007488014.1| - 1.6e-13 50.3 0.0 2.5e-13 49.7 0.0 1.3 1 1 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|452207892|ref|YP_007488014.1| - 6.4e-08 32.2 0.0 8.8e-08 31.7 0.0 1.2 1 0 0 1 1 1 1 AAA domain UPF0079 PF02367.12 gi|452207892|ref|YP_007488014.1| - 8.6e-05 22.1 0.0 0.00019 21.0 0.0 1.6 1 0 0 1 1 1 1 Uncharacterised P-loop hydrolase UPF0079 AAA_22 PF13401.1 gi|452207892|ref|YP_007488014.1| - 0.0056 16.8 0.0 0.0097 16.0 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|452207892|ref|YP_007488014.1| - 0.0089 16.0 0.0 0.014 15.4 0.0 1.3 1 1 0 1 1 1 1 AAA ATPase domain NACHT PF05729.7 gi|452207892|ref|YP_007488014.1| - 0.039 13.6 0.0 0.64 9.6 0.0 2.1 1 1 0 1 1 1 0 NACHT domain Resolvase PF00239.16 gi|452207892|ref|YP_007488014.1| - 0.053 13.3 0.1 0.079 12.8 0.0 1.3 1 0 0 1 1 1 0 Resolvase, N terminal domain T2SE PF00437.15 gi|452207893|ref|YP_007488015.1| - 3e-42 144.3 0.0 4.2e-42 143.9 0.0 1.1 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_22 PF13401.1 gi|452207893|ref|YP_007488015.1| - 0.0022 18.1 0.0 0.0059 16.7 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|452207893|ref|YP_007488015.1| - 0.0091 15.5 0.0 0.019 14.5 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|452207893|ref|YP_007488015.1| - 0.011 15.6 0.0 0.05 13.5 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain ABC_tran PF00005.22 gi|452207893|ref|YP_007488015.1| - 0.015 15.6 0.0 0.048 13.9 0.0 1.8 2 0 0 2 2 2 0 ABC transporter AIG1 PF04548.11 gi|452207893|ref|YP_007488015.1| - 0.088 11.8 0.0 0.19 10.7 0.0 1.6 2 0 0 2 2 2 0 AIG1 family MobB PF03205.9 gi|452207893|ref|YP_007488015.1| - 0.096 12.3 0.0 0.19 11.4 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B FtsK_SpoIIIE PF01580.13 gi|452207893|ref|YP_007488015.1| - 0.12 11.8 0.0 0.24 10.8 0.0 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family T2SF PF00482.18 gi|452207894|ref|YP_007488016.1| - 1.3e-14 54.1 4.0 3.9e-08 33.2 0.2 3.0 2 0 0 2 2 2 2 Type II secretion system (T2SS), protein F AAA_32 PF13654.1 gi|452207894|ref|YP_007488016.1| - 0.007 15.0 0.1 0.011 14.4 0.1 1.2 1 0 0 1 1 1 1 AAA domain HycH PF07450.6 gi|452207894|ref|YP_007488016.1| - 0.099 12.7 0.0 0.29 11.2 0.0 1.8 1 0 0 1 1 1 0 Formate hydrogenlyase maturation protein HycH DUF1212 PF06738.7 gi|452207894|ref|YP_007488016.1| - 0.21 11.0 6.8 3.7 6.9 0.5 3.0 2 1 0 2 2 2 0 Protein of unknown function (DUF1212) CheF-arch PF04283.7 gi|452207895|ref|YP_007488017.1| - 1.7e-52 177.8 0.0 2.2e-52 177.4 0.0 1.1 1 0 0 1 1 1 1 Chemotaxis signal transduction system protein F from archaea Metallophos_2 PF12850.2 gi|452207896|ref|YP_007488018.1| - 2.4e-06 27.4 0.1 3.1e-06 27.1 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|452207896|ref|YP_007488018.1| - 0.00065 19.1 0.0 0.0019 17.6 0.0 1.6 1 1 0 2 2 2 1 Calcineurin-like phosphoesterase RelB_N PF12910.2 gi|452207896|ref|YP_007488018.1| - 0.045 13.1 0.0 0.093 12.1 0.0 1.5 1 0 0 1 1 1 0 Antitoxin of toxin-antitoxin stability system N-terminal RNA_pol_Rpo13 PF12136.3 gi|452207897|ref|YP_007488019.1| - 0.52 10.0 3.2 1.5 8.6 2.2 1.8 1 0 0 1 1 1 0 RNA polymerase Rpo13 subunit HTH domain tRNA_anti-codon PF01336.20 gi|452207898|ref|YP_007488020.1| - 1.1e-06 28.4 3.1 0.089 12.6 0.0 4.4 3 1 1 4 4 4 3 OB-fold nucleic acid binding domain DUF35_N PF12172.3 gi|452207898|ref|YP_007488020.1| - 0.048 13.5 0.3 0.13 12.1 0.2 1.7 1 0 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) DEAD PF00270.24 gi|452207899|ref|YP_007488021.1| - 7.9e-15 54.7 0.0 1.7e-14 53.6 0.0 1.5 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|452207899|ref|YP_007488021.1| - 2.4e-12 46.5 0.0 6.7e-11 41.8 0.0 2.5 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DUF1998 PF09369.5 gi|452207899|ref|YP_007488021.1| - 9.9e-12 45.2 0.1 2.9e-10 40.5 0.0 2.6 2 0 0 2 2 2 1 Domain of unknown function (DUF1998) ResIII PF04851.10 gi|452207899|ref|YP_007488021.1| - 1.7e-05 24.7 0.0 2.8e-05 24.0 0.0 1.3 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit SNF2_N PF00176.18 gi|452207899|ref|YP_007488021.1| - 0.33 9.6 0.1 0.54 9.0 0.0 1.2 1 0 0 1 1 1 0 SNF2 family N-terminal domain RNase_H_2 PF13482.1 gi|452207900|ref|YP_007488022.1| - 9.8e-32 110.0 0.0 1.3e-31 109.6 0.0 1.1 1 0 0 1 1 1 1 RNase_H superfamily HHH_5 PF14520.1 gi|452207900|ref|YP_007488022.1| - 2.4e-09 37.2 1.0 5.5e-09 36.0 0.7 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix domain HHH PF00633.18 gi|452207900|ref|YP_007488022.1| - 1.6e-05 24.3 0.1 0.0036 16.9 0.0 2.8 2 0 0 2 2 2 2 Helix-hairpin-helix motif SnoaL_2 PF12680.2 gi|452207900|ref|YP_007488022.1| - 0.053 13.9 1.5 6.9 7.1 0.1 3.1 2 0 0 2 2 2 0 SnoaL-like domain Thioredoxin_9 PF14595.1 gi|452207901|ref|YP_007488023.1| - 0.002 17.6 0.0 0.0052 16.3 0.0 1.6 1 1 0 1 1 1 1 Thioredoxin Thioredoxin PF00085.15 gi|452207901|ref|YP_007488023.1| - 0.0026 17.4 0.1 0.0043 16.7 0.1 1.4 1 1 0 1 1 1 1 Thioredoxin AhpC-TSA PF00578.16 gi|452207901|ref|YP_007488023.1| - 0.011 15.4 0.0 0.021 14.4 0.0 1.4 1 1 0 1 1 1 0 AhpC/TSA family Thioredoxin_7 PF13899.1 gi|452207901|ref|YP_007488023.1| - 0.011 15.7 0.6 0.016 15.2 0.4 1.6 1 1 0 1 1 1 0 Thioredoxin-like ATP-grasp_5 PF13549.1 gi|452207901|ref|YP_007488023.1| - 0.024 13.8 0.3 5.1 6.2 0.0 2.3 1 1 2 3 3 3 0 ATP-grasp domain Thioredoxin_3 PF13192.1 gi|452207901|ref|YP_007488023.1| - 0.045 13.5 0.0 0.072 12.9 0.0 1.3 1 0 0 1 1 1 0 Thioredoxin domain CheD PF03975.8 gi|452207902|ref|YP_007488024.1| - 3.3e-25 88.0 0.0 4e-25 87.8 0.0 1.1 1 0 0 1 1 1 1 CheD chemotactic sensory transduction CheC PF04509.7 gi|452207903|ref|YP_007488025.1| - 6.3e-23 80.2 0.4 1.9e-11 43.4 0.1 2.5 2 0 0 2 2 2 2 CheC-like family CheX PF13690.1 gi|452207903|ref|YP_007488025.1| - 4.9e-14 51.9 0.1 4.7e-08 32.7 0.0 2.4 2 0 0 2 2 2 2 Chemotaxis phosphatase CheX Response_reg PF00072.19 gi|452207904|ref|YP_007488026.1| - 9.7e-31 106.0 0.4 1.1e-30 105.9 0.3 1.0 1 0 0 1 1 1 1 Response regulator receiver domain DUF3372 PF11852.3 gi|452207904|ref|YP_007488026.1| - 0.1 11.7 0.1 0.12 11.4 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3372) Arch_flagellin PF01917.11 gi|452207906|ref|YP_007488028.1| - 7.5e-12 45.2 4.1 2.4e-11 43.6 2.8 1.7 1 1 0 1 1 1 1 Archaebacterial flagellin Arch_flagellin PF01917.11 gi|452207907|ref|YP_007488029.1| - 3.6e-18 65.8 7.2 8.7e-18 64.6 5.0 1.6 1 1 0 1 1 1 1 Archaebacterial flagellin Arch_flagellin PF01917.11 gi|452207908|ref|YP_007488030.1| - 3.9e-10 39.6 6.5 2.5e-09 37.0 4.5 1.9 1 1 0 1 1 1 1 Archaebacterial flagellin CARDB PF07705.6 gi|452207908|ref|YP_007488030.1| - 0.009 16.0 1.1 0.014 15.4 0.8 1.4 1 1 0 1 1 1 1 CARDB DUF756 PF05506.7 gi|452207908|ref|YP_007488030.1| - 0.02 15.3 0.0 0.036 14.5 0.0 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF756) DUF217 PF02697.9 gi|452207909|ref|YP_007488031.1| - 3.4e-13 49.6 0.0 3.7e-13 49.5 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized ACR, COG1753 PSK_trans_fac PF07704.6 gi|452207909|ref|YP_007488031.1| - 0.083 13.5 0.7 0.096 13.3 0.4 1.3 1 1 0 1 1 1 0 Rv0623-like transcription factor HTH_IclR PF09339.5 gi|452207910|ref|YP_007488032.1| - 2e-08 33.7 0.1 3.2e-08 33.0 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|452207910|ref|YP_007488032.1| - 5.2e-08 32.4 0.0 8.3e-08 31.7 0.0 1.3 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|452207910|ref|YP_007488032.1| - 1.7e-05 24.4 0.0 2.7e-05 23.7 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|452207910|ref|YP_007488032.1| - 0.00054 19.7 0.0 0.00083 19.1 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|452207910|ref|YP_007488032.1| - 0.0018 17.6 0.0 0.0024 17.1 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Rrf2 PF02082.15 gi|452207910|ref|YP_007488032.1| - 0.0019 18.2 0.0 0.0036 17.3 0.0 1.4 2 0 0 2 2 2 1 Transcriptional regulator Sulfolobus_pRN PF05584.6 gi|452207910|ref|YP_007488032.1| - 0.0033 17.3 0.0 0.0046 16.8 0.0 1.2 1 0 0 1 1 1 1 Sulfolobus plasmid regulatory protein NfeD PF01957.13 gi|452207910|ref|YP_007488032.1| - 0.01 15.9 0.0 0.012 15.7 0.0 1.1 1 0 0 1 1 1 0 NfeD-like C-terminal, partner-binding HTH_27 PF13463.1 gi|452207910|ref|YP_007488032.1| - 0.013 15.8 0.0 0.02 15.1 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain MarR PF01047.17 gi|452207910|ref|YP_007488032.1| - 0.042 13.5 0.0 0.06 13.0 0.0 1.2 1 0 0 1 1 1 0 MarR family TerB PF05099.8 gi|452207910|ref|YP_007488032.1| - 0.056 13.1 0.4 0.99 9.1 0.3 2.0 1 1 0 1 1 1 0 Tellurite resistance protein TerB HTH_23 PF13384.1 gi|452207910|ref|YP_007488032.1| - 0.084 12.5 0.0 0.14 11.8 0.0 1.3 1 0 0 1 1 1 0 Homeodomain-like domain HTH_34 PF13601.1 gi|452207910|ref|YP_007488032.1| - 0.088 12.8 0.0 0.12 12.4 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_5 PF01022.15 gi|452207910|ref|YP_007488032.1| - 0.092 12.4 0.0 0.13 11.9 0.0 1.2 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family DDE_Tnp_IS240 PF13610.1 gi|452207911|ref|YP_007488033.1| - 8.3e-14 51.7 0.2 1.1e-13 51.3 0.1 1.2 1 0 0 1 1 1 1 DDE domain DDE_Tnp_IS66 PF03050.9 gi|452207911|ref|YP_007488033.1| - 8.9e-05 21.8 0.1 0.00023 20.4 0.0 1.8 1 1 0 1 1 1 1 Transposase IS66 family rve PF00665.21 gi|452207911|ref|YP_007488033.1| - 0.00035 20.6 0.2 0.00053 20.0 0.1 1.3 1 0 0 1 1 1 1 Integrase core domain HTH_28 PF13518.1 gi|452207911|ref|YP_007488033.1| - 0.051 13.5 0.0 2.2 8.3 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain DDE_3 PF13358.1 gi|452207911|ref|YP_007488033.1| - 0.094 12.4 0.0 0.32 10.7 0.0 1.8 1 1 0 1 1 1 0 DDE superfamily endonuclease Arch_flagellin PF01917.11 gi|452207912|ref|YP_007488034.1| - 4.5e-32 111.2 3.6 5.3e-32 110.9 2.5 1.2 1 0 0 1 1 1 1 Archaebacterial flagellin Arch_flagellin PF01917.11 gi|452207913|ref|YP_007488035.1| - 3.3e-32 111.6 8.9 6.1e-32 110.7 6.2 1.4 1 1 0 1 1 1 1 Archaebacterial flagellin Arch_flagellin PF01917.11 gi|452207914|ref|YP_007488036.1| - 1.4e-33 116.1 8.4 2e-33 115.5 5.8 1.2 1 0 0 1 1 1 1 Archaebacterial flagellin DUF1628 PF07790.6 gi|452207914|ref|YP_007488036.1| - 1.3 9.8 7.0 1.6 9.5 2.2 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF1628) Ferritin PF00210.19 gi|452207915|ref|YP_007488037.1| - 5.2e-23 81.3 0.1 6.1e-23 81.1 0.1 1.0 1 0 0 1 1 1 1 Ferritin-like domain Rubrerythrin PF02915.12 gi|452207915|ref|YP_007488037.1| - 5.6e-09 36.4 0.2 6.5e-09 36.2 0.1 1.0 1 0 0 1 1 1 1 Rubrerythrin DUF892 PF05974.7 gi|452207915|ref|YP_007488037.1| - 6.2e-07 29.3 1.9 1.1e-06 28.5 1.3 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF892) DUF2383 PF09537.5 gi|452207915|ref|YP_007488037.1| - 0.0032 17.6 1.0 1.8 8.8 0.1 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF2383) DUF4439 PF14530.1 gi|452207915|ref|YP_007488037.1| - 0.0038 17.7 1.4 0.006 17.0 1.0 1.3 1 1 0 1 1 1 1 Domain of unknown function (DUF4439) Ferritin_2 PF13668.1 gi|452207915|ref|YP_007488037.1| - 0.0054 16.6 0.2 0.0066 16.3 0.1 1.2 1 0 0 1 1 1 1 Ferritin-like domain GatB_Yqey PF02637.13 gi|452207915|ref|YP_007488037.1| - 0.016 14.8 0.2 0.02 14.6 0.1 1.1 1 0 0 1 1 1 0 GatB domain DUF455 PF04305.9 gi|452207915|ref|YP_007488037.1| - 0.3 10.3 1.9 0.63 9.2 0.4 2.0 2 1 0 2 2 2 0 Protein of unknown function (DUF455) DsbD PF02683.10 gi|452207916|ref|YP_007488038.1| - 2.7e-26 92.4 9.9 3.8e-26 92.0 6.9 1.2 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region DsbD_2 PF13386.1 gi|452207916|ref|YP_007488038.1| - 7.6e-12 45.3 13.1 1.4e-11 44.4 9.0 1.5 1 1 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region Rnf-Nqr PF02508.9 gi|452207916|ref|YP_007488038.1| - 0.1 12.2 2.6 0.18 11.4 1.7 1.7 1 1 0 1 1 1 0 Rnf-Nqr subunit, membrane protein Cytochrome_CBB3 PF13442.1 gi|452207917|ref|YP_007488039.1| - 2.3e-12 46.8 0.3 2.5e-07 30.7 0.0 2.7 2 0 0 2 2 2 2 Cytochrome C oxidase, cbb3-type, subunit III Cytochrom_C PF00034.16 gi|452207917|ref|YP_007488039.1| - 8.4e-11 42.5 3.6 1.3e-06 29.0 0.0 3.2 4 0 0 4 4 4 2 Cytochrome c Cytochrome_C7 PF14522.1 gi|452207917|ref|YP_007488039.1| - 0.0022 17.5 0.1 1.3 8.7 0.0 2.3 2 0 0 2 2 2 2 Cytochrome c7 DUF1924 PF09086.6 gi|452207917|ref|YP_007488039.1| - 0.0059 16.6 0.0 2.2 8.4 0.0 2.4 2 0 0 2 2 2 2 Domain of unknown function (DUF1924) GSu_C4xC__C2xCH PF09698.5 gi|452207917|ref|YP_007488039.1| - 0.021 14.9 0.2 2.1 8.5 0.0 2.7 2 0 0 2 2 2 0 Geobacter CxxxxCH...CXXCH motif (GSu_C4xC__C2xCH) Cytochrome_C554 PF13435.1 gi|452207917|ref|YP_007488039.1| - 0.028 14.4 0.1 5 7.1 0.0 2.3 2 0 0 2 2 2 0 Cytochrome c554 and c-prime Cytochrom_c3_2 PF14537.1 gi|452207917|ref|YP_007488039.1| - 0.053 13.8 0.3 8 6.8 0.0 2.3 2 0 0 2 2 2 0 Cytochrome c3 Cytochrom_C550 PF14495.1 gi|452207917|ref|YP_007488039.1| - 0.14 11.5 0.2 20 4.6 0.0 2.6 3 0 0 3 3 3 0 Cytochrome c-550 domain Cytochrom_C1 PF02167.10 gi|452207917|ref|YP_007488039.1| - 0.24 11.0 1.8 0.59 9.7 0.0 2.4 3 0 0 3 3 3 0 Cytochrome C1 family Thioredoxin_7 PF13899.1 gi|452207918|ref|YP_007488040.1| - 1.2e-12 47.6 0.0 1.6e-12 47.2 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin-like Thioredoxin_2 PF13098.1 gi|452207918|ref|YP_007488040.1| - 2.1e-09 37.5 0.0 3.8e-09 36.7 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin-like domain Thioredoxin PF00085.15 gi|452207918|ref|YP_007488040.1| - 7e-07 28.8 0.0 1.1e-06 28.3 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin Thioredox_DsbH PF03190.10 gi|452207918|ref|YP_007488040.1| - 3.2e-06 26.9 0.0 4.8e-06 26.3 0.0 1.4 1 1 0 1 1 1 1 Protein of unknown function, DUF255 Thioredoxin_8 PF13905.1 gi|452207918|ref|YP_007488040.1| - 9e-05 22.5 0.1 0.00017 21.6 0.0 1.5 1 1 0 1 1 1 1 Thioredoxin-like AhpC-TSA PF00578.16 gi|452207918|ref|YP_007488040.1| - 0.00014 21.5 0.0 0.00024 20.7 0.0 1.4 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|452207918|ref|YP_007488040.1| - 0.0019 17.7 0.0 0.0025 17.3 0.0 1.5 1 0 0 1 1 1 1 Redoxin Cytochrom_C_asm PF01578.15 gi|452207919|ref|YP_007488041.1| - 3.7e-27 95.2 13.6 3.7e-27 95.2 9.4 2.9 3 1 0 3 3 3 1 Cytochrome C assembly protein CarboxypepD_reg PF13620.1 gi|452207920|ref|YP_007488042.1| - 3e-14 52.8 8.0 1.1e-13 51.0 1.0 2.8 2 0 0 2 2 2 1 Carboxypeptidase regulatory-like domain DUF4480 PF13715.1 gi|452207920|ref|YP_007488042.1| - 1.1e-07 31.8 0.1 1.6e-06 28.0 0.0 2.6 2 0 0 2 2 2 1 Domain of unknown function (DUF4480) DUF1416 PF07210.7 gi|452207920|ref|YP_007488042.1| - 0.00016 21.1 0.1 0.00057 19.4 0.0 1.9 1 0 0 1 1 1 1 Protein of unknown function (DUF1416) DUF2012 PF09430.5 gi|452207920|ref|YP_007488042.1| - 0.00022 21.0 0.1 0.035 13.9 0.0 2.4 2 0 0 2 2 2 1 Protein of unknown function (DUF2012) fn3 PF00041.16 gi|452207920|ref|YP_007488042.1| - 0.0022 18.0 1.2 0.11 12.6 0.0 2.5 2 0 0 2 2 2 1 Fibronectin type III domain Dioxygenase_C PF00775.16 gi|452207920|ref|YP_007488042.1| - 0.0074 15.5 0.1 0.02 14.1 0.0 1.7 2 0 0 2 2 2 1 Dioxygenase DPRP PF04244.8 gi|452207921|ref|YP_007488043.1| - 5.4e-56 189.6 0.0 9.4e-56 188.8 0.0 1.3 1 0 0 1 1 1 1 Deoxyribodipyrimidine photo-lyase-related protein FAD_binding_7 PF03441.9 gi|452207921|ref|YP_007488043.1| - 2.7e-08 33.3 0.0 4.5e-08 32.6 0.0 1.3 1 0 0 1 1 1 1 FAD binding domain of DNA photolyase Copper-bind PF00127.15 gi|452207922|ref|YP_007488044.1| - 9.8e-13 48.1 0.1 2e-12 47.2 0.0 1.5 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family TAT_signal PF10518.4 gi|452207922|ref|YP_007488044.1| - 0.00072 19.3 1.7 0.0016 18.2 1.2 1.6 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Gly-zipper_OmpA PF13436.1 gi|452207922|ref|YP_007488044.1| - 0.74 9.4 11.4 1.5 8.5 7.9 1.5 1 0 0 1 1 1 0 Glycine-zipper containing OmpA-like membrane domain UDG PF03167.14 gi|452207923|ref|YP_007488045.1| - 0.00024 20.6 0.0 0.001 18.5 0.0 1.8 1 1 0 1 1 1 1 Uracil DNA glycosylase superfamily Big_1 PF02369.11 gi|452207924|ref|YP_007488046.1| - 2.5e-05 24.1 0.0 3.4e-05 23.6 0.0 1.2 1 0 0 1 1 1 1 Bacterial Ig-like domain (group 1) CarboxypepD_reg PF13620.1 gi|452207924|ref|YP_007488046.1| - 0.00058 19.8 0.8 0.001 19.0 0.5 1.5 1 1 0 1 1 1 1 Carboxypeptidase regulatory-like domain YtkA PF13115.1 gi|452207924|ref|YP_007488046.1| - 0.0043 17.3 0.9 0.0097 16.2 0.6 1.6 1 1 0 1 1 1 1 YtkA-like Big_3_4 PF13754.1 gi|452207924|ref|YP_007488046.1| - 0.01 16.1 3.0 0.067 13.5 0.1 2.4 3 0 0 3 3 3 0 Bacterial Ig-like domain (group 3) CopC PF04234.7 gi|452207924|ref|YP_007488046.1| - 0.025 15.2 0.0 0.068 13.7 0.0 1.7 2 0 0 2 2 2 0 CopC domain Rib PF08428.5 gi|452207924|ref|YP_007488046.1| - 0.067 12.9 1.3 0.13 11.9 0.9 1.4 1 0 0 1 1 1 0 Rib/alpha-like repeat CRCB PF02537.10 gi|452207925|ref|YP_007488047.1| - 2.5e-23 82.1 7.5 2.8e-23 82.0 5.2 1.0 1 0 0 1 1 1 1 CrcB-like protein SpecificRecomb PF10136.4 gi|452207925|ref|YP_007488047.1| - 0.022 12.8 0.5 0.031 12.3 0.3 1.1 1 0 0 1 1 1 0 Site-specific recombinase DUF1350 PF07082.6 gi|452207925|ref|YP_007488047.1| - 0.13 11.2 0.2 0.15 11.1 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1350) DUF1049 PF06305.6 gi|452207925|ref|YP_007488047.1| - 0.34 10.4 2.8 1 8.8 0.2 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1049) EmrE PF13536.1 gi|452207925|ref|YP_007488047.1| - 2.1 8.5 8.9 3.1 8.0 0.9 2.1 1 1 1 2 2 2 0 Multidrug resistance efflux transporter CRCB PF02537.10 gi|452207926|ref|YP_007488048.1| - 9.3e-26 90.0 7.6 1.1e-25 89.8 5.2 1.0 1 0 0 1 1 1 1 CrcB-like protein MFS_1 PF07690.11 gi|452207926|ref|YP_007488048.1| - 0.034 12.8 10.4 0.04 12.6 7.2 1.1 1 0 0 1 1 1 0 Major Facilitator Superfamily HalX PF08663.5 gi|452207927|ref|YP_007488049.1| - 2.2e-22 78.8 9.7 5.5e-22 77.5 6.7 1.7 1 0 0 1 1 1 1 HalX domain Response_reg PF00072.19 gi|452207927|ref|YP_007488049.1| - 2.9e-13 49.8 0.4 6.6e-13 48.6 0.1 1.7 2 0 0 2 2 2 1 Response regulator receiver domain Ribosomal_L40e PF01020.12 gi|452207928|ref|YP_007488050.1| - 6.2e-05 22.5 7.1 7.4e-05 22.2 4.9 1.1 1 0 0 1 1 1 1 Ribosomal L40e family DZR PF12773.2 gi|452207928|ref|YP_007488050.1| - 0.0005 19.8 1.3 0.00062 19.5 0.9 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-DHHC PF01529.15 gi|452207928|ref|YP_007488050.1| - 0.0023 17.3 1.1 0.0024 17.2 0.7 1.0 1 0 0 1 1 1 1 DHHC palmitoyltransferase zinc_ribbon_2 PF13240.1 gi|452207928|ref|YP_007488050.1| - 0.0031 16.9 0.9 0.0042 16.5 0.6 1.3 1 0 0 1 1 1 1 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|452207928|ref|YP_007488050.1| - 0.0054 15.9 1.2 0.0067 15.5 0.8 1.2 1 0 0 1 1 1 1 zinc-ribbon domain zf-CHY PF05495.7 gi|452207928|ref|YP_007488050.1| - 0.063 13.4 0.9 0.079 13.1 0.6 1.2 1 0 0 1 1 1 0 CHY zinc finger DNA_RNApol_7kD PF03604.8 gi|452207928|ref|YP_007488050.1| - 0.38 10.2 6.3 1.5 8.3 4.4 1.9 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit RNA_POL_M_15KD PF02150.11 gi|452207928|ref|YP_007488050.1| - 0.77 9.4 5.1 8.2 6.2 3.7 2.1 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit SRP54 PF00448.17 gi|452207929|ref|YP_007488051.1| - 2.4e-63 213.1 0.1 4.3e-63 212.3 0.1 1.4 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP_SPB PF02978.14 gi|452207929|ref|YP_007488051.1| - 5e-29 100.6 6.4 5e-29 100.6 4.4 2.6 2 1 1 3 3 3 1 Signal peptide binding domain SRP54_N PF02881.14 gi|452207929|ref|YP_007488051.1| - 2.8e-17 62.5 1.0 6.6e-17 61.3 0.2 2.0 2 0 0 2 2 1 1 SRP54-type protein, helical bundle domain MobB PF03205.9 gi|452207929|ref|YP_007488051.1| - 4.3e-05 23.2 0.0 0.00093 18.9 0.0 2.4 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_10 PF12846.2 gi|452207929|ref|YP_007488051.1| - 0.00013 21.5 0.6 0.00021 20.8 0.4 1.5 1 1 0 1 1 1 1 AAA-like domain CbiA PF01656.18 gi|452207929|ref|YP_007488051.1| - 0.00017 21.0 0.1 0.00088 18.7 0.1 2.3 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain cobW PF02492.14 gi|452207929|ref|YP_007488051.1| - 0.0012 18.3 0.2 0.0086 15.5 0.1 2.3 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain SMC_N PF02463.14 gi|452207929|ref|YP_007488051.1| - 0.0022 17.2 0.0 0.0037 16.5 0.0 1.3 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|452207929|ref|YP_007488051.1| - 0.0037 17.4 0.0 0.017 15.2 0.0 2.1 2 0 0 2 2 1 1 AAA domain Zeta_toxin PF06414.7 gi|452207929|ref|YP_007488051.1| - 0.0041 16.2 0.0 0.0096 15.0 0.0 1.6 1 0 0 1 1 1 1 Zeta toxin AAA_25 PF13481.1 gi|452207929|ref|YP_007488051.1| - 0.0044 16.4 2.9 0.0052 16.2 0.2 2.3 2 1 0 3 3 3 1 AAA domain AAA_33 PF13671.1 gi|452207929|ref|YP_007488051.1| - 0.0051 16.6 0.0 0.037 13.8 0.0 2.2 2 0 0 2 2 2 1 AAA domain APS_kinase PF01583.15 gi|452207929|ref|YP_007488051.1| - 0.022 14.3 0.0 0.048 13.3 0.0 1.5 1 0 0 1 1 1 0 Adenylylsulphate kinase KTI12 PF08433.5 gi|452207929|ref|YP_007488051.1| - 0.023 13.9 0.0 0.048 12.8 0.0 1.5 1 0 0 1 1 1 0 Chromatin associated protein KTI12 Thymidylate_kin PF02223.12 gi|452207929|ref|YP_007488051.1| - 0.034 13.5 0.5 0.25 10.7 0.0 2.4 2 0 0 2 2 2 0 Thymidylate kinase AAA_19 PF13245.1 gi|452207929|ref|YP_007488051.1| - 0.035 13.8 0.0 0.36 10.5 0.0 2.6 2 0 0 2 2 2 0 Part of AAA domain ArsA_ATPase PF02374.10 gi|452207929|ref|YP_007488051.1| - 0.04 12.9 6.6 0.074 12.0 0.0 2.7 3 0 0 3 3 3 0 Anion-transporting ATPase 6PF2K PF01591.13 gi|452207929|ref|YP_007488051.1| - 0.049 12.7 0.0 0.13 11.3 0.0 1.6 2 0 0 2 2 2 0 6-phosphofructo-2-kinase AAA_17 PF13207.1 gi|452207929|ref|YP_007488051.1| - 0.06 14.1 0.3 0.3 11.9 0.1 2.3 2 1 0 2 2 1 0 AAA domain PRK PF00485.13 gi|452207929|ref|YP_007488051.1| - 0.062 12.8 0.0 0.16 11.5 0.0 1.7 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA_23 PF13476.1 gi|452207929|ref|YP_007488051.1| - 0.077 13.3 0.0 0.15 12.4 0.0 1.6 1 1 0 1 1 1 0 AAA domain ATP_bind_1 PF03029.12 gi|452207929|ref|YP_007488051.1| - 0.098 12.1 0.2 0.53 9.7 0.0 2.1 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein NACHT PF05729.7 gi|452207929|ref|YP_007488051.1| - 0.13 11.8 0.1 0.56 9.8 0.0 2.2 3 0 0 3 3 2 0 NACHT domain CARD PF00619.16 gi|452207929|ref|YP_007488051.1| - 0.14 11.9 0.9 1.1 9.0 0.1 2.3 2 0 0 2 2 2 0 Caspase recruitment domain AAA_18 PF13238.1 gi|452207929|ref|YP_007488051.1| - 0.18 12.1 0.6 0.55 10.5 0.1 2.2 2 1 0 2 2 1 0 AAA domain Response_reg PF00072.19 gi|452207930|ref|YP_007488052.1| - 1.8e-16 60.1 0.0 3e-16 59.4 0.0 1.4 1 0 0 1 1 1 1 Response regulator receiver domain HTH_20 PF12840.2 gi|452207930|ref|YP_007488052.1| - 6.6e-09 35.4 0.0 1.4e-08 34.3 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|452207930|ref|YP_007488052.1| - 4.3e-07 29.4 0.0 9.1e-07 28.3 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|452207930|ref|YP_007488052.1| - 1.4e-06 27.6 0.0 2.5e-06 26.7 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|452207930|ref|YP_007488052.1| - 6e-06 25.8 0.0 1.6e-05 24.4 0.0 1.7 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.15 gi|452207930|ref|YP_007488052.1| - 7.4e-05 22.3 0.0 0.00013 21.5 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|452207930|ref|YP_007488052.1| - 0.00037 20.1 0.0 0.00092 18.8 0.0 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_28 PF13518.1 gi|452207930|ref|YP_007488052.1| - 0.0022 17.9 0.0 0.0043 17.0 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain FUR PF01475.14 gi|452207930|ref|YP_007488052.1| - 0.0028 17.5 0.0 0.0054 16.6 0.0 1.4 1 0 0 1 1 1 1 Ferric uptake regulator family HTH_36 PF13730.1 gi|452207930|ref|YP_007488052.1| - 0.0063 16.6 0.0 0.012 15.7 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Rrf2 PF02082.15 gi|452207930|ref|YP_007488052.1| - 0.0072 16.4 0.0 0.016 15.3 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator HTH_23 PF13384.1 gi|452207930|ref|YP_007488052.1| - 0.0073 15.9 0.1 0.015 14.9 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_Crp_2 PF13545.1 gi|452207930|ref|YP_007488052.1| - 0.014 15.2 0.0 0.044 13.5 0.0 1.8 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain HTH_27 PF13463.1 gi|452207930|ref|YP_007488052.1| - 0.015 15.5 0.0 0.07 13.4 0.0 2.0 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_29 PF13551.1 gi|452207930|ref|YP_007488052.1| - 0.023 14.8 0.0 0.053 13.6 0.0 1.6 1 1 0 1 1 1 0 Winged helix-turn helix RepL PF05732.6 gi|452207930|ref|YP_007488052.1| - 0.029 13.6 0.0 0.059 12.5 0.0 1.5 1 1 0 1 1 1 0 Firmicute plasmid replication protein (RepL) HTH_11 PF08279.7 gi|452207930|ref|YP_007488052.1| - 0.029 13.9 0.0 0.057 13.0 0.0 1.4 1 0 0 1 1 1 0 HTH domain MarR PF01047.17 gi|452207930|ref|YP_007488052.1| - 0.033 13.9 0.0 0.069 12.8 0.0 1.5 1 0 0 1 1 1 0 MarR family Crp PF00325.15 gi|452207930|ref|YP_007488052.1| - 0.065 12.7 0.3 0.55 9.7 0.0 2.4 2 0 0 2 2 2 0 Bacterial regulatory proteins, crp family HTH_AsnC-type PF13404.1 gi|452207930|ref|YP_007488052.1| - 0.083 12.4 0.4 0.28 10.7 0.0 2.0 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain DUF2250 PF10007.4 gi|452207930|ref|YP_007488052.1| - 0.1 12.5 0.0 0.2 11.6 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) PadR PF03551.9 gi|452207930|ref|YP_007488052.1| - 0.15 11.8 0.0 0.31 10.8 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family CARDB PF07705.6 gi|452207931|ref|YP_007488053.1| - 2.7e-09 37.0 2.8 7e-06 26.0 0.2 3.3 4 0 0 4 4 4 2 CARDB DUF11 PF01345.13 gi|452207931|ref|YP_007488053.1| - 0.02 14.9 1.8 0.02 14.9 1.2 3.5 3 0 0 3 3 3 0 Domain of unknown function DUF11 NPCBM_assoc PF10633.4 gi|452207931|ref|YP_007488053.1| - 5.9 7.0 11.3 7.4 6.7 0.2 3.9 4 0 0 4 4 4 0 NPCBM-associated, NEW3 domain of alpha-galactosidase ABC_tran PF00005.22 gi|452207932|ref|YP_007488054.1| - 4.9e-34 117.5 0.0 6e-34 117.2 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|452207932|ref|YP_007488054.1| - 9.9e-10 38.8 0.0 0.00041 20.4 0.0 2.1 1 1 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|452207932|ref|YP_007488054.1| - 3.8e-05 23.0 0.0 0.0047 16.1 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|452207932|ref|YP_007488054.1| - 0.00016 21.1 0.1 0.00029 20.3 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|452207932|ref|YP_007488054.1| - 0.00077 19.4 0.6 0.0021 18.0 0.4 1.9 1 1 0 1 1 1 1 AAA ATPase domain DUF258 PF03193.11 gi|452207932|ref|YP_007488054.1| - 0.0014 17.8 0.0 0.0021 17.2 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF258 Arch_ATPase PF01637.13 gi|452207932|ref|YP_007488054.1| - 0.0016 18.1 0.0 0.0021 17.7 0.0 1.2 1 0 0 1 1 1 1 Archaeal ATPase AAA_17 PF13207.1 gi|452207932|ref|YP_007488054.1| - 0.0027 18.5 0.9 0.013 16.2 0.5 2.1 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|452207932|ref|YP_007488054.1| - 0.0031 17.3 0.1 0.0086 15.9 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|452207932|ref|YP_007488054.1| - 0.0046 17.0 0.0 0.015 15.4 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_10 PF12846.2 gi|452207932|ref|YP_007488054.1| - 0.0069 15.8 0.0 0.012 15.0 0.0 1.5 1 0 0 1 1 1 1 AAA-like domain T2SE PF00437.15 gi|452207932|ref|YP_007488054.1| - 0.015 14.2 0.0 0.024 13.5 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_25 PF13481.1 gi|452207932|ref|YP_007488054.1| - 0.016 14.6 0.2 0.05 13.0 0.0 1.8 2 0 0 2 2 2 0 AAA domain cobW PF02492.14 gi|452207932|ref|YP_007488054.1| - 0.025 14.0 0.0 0.025 14.0 0.0 1.4 1 1 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_19 PF13245.1 gi|452207932|ref|YP_007488054.1| - 0.034 13.8 1.1 0.11 12.2 0.0 2.4 3 1 0 3 3 2 0 Part of AAA domain AAA_30 PF13604.1 gi|452207932|ref|YP_007488054.1| - 0.047 13.2 0.1 0.16 11.5 0.0 1.8 2 0 0 2 2 2 0 AAA domain RNA12 PF10443.4 gi|452207932|ref|YP_007488054.1| - 0.057 11.9 0.0 0.074 11.5 0.0 1.1 1 0 0 1 1 1 0 RNA12 protein MMR_HSR1 PF01926.18 gi|452207932|ref|YP_007488054.1| - 0.067 13.1 0.2 0.086 12.8 0.1 1.6 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_14 PF13173.1 gi|452207932|ref|YP_007488054.1| - 0.095 12.5 0.0 0.14 12.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|452207932|ref|YP_007488054.1| - 0.11 12.8 0.0 0.17 12.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain MobB PF03205.9 gi|452207932|ref|YP_007488054.1| - 0.12 12.1 0.0 0.21 11.3 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B MacB_PCD PF12704.2 gi|452207933|ref|YP_007488055.1| - 5.5e-24 85.0 3.4 5.5e-24 85.0 2.4 2.6 2 1 1 3 3 3 1 MacB-like periplasmic core domain FtsX PF02687.16 gi|452207933|ref|YP_007488055.1| - 1.6e-18 66.6 11.7 6.5e-18 64.6 5.7 2.2 2 0 0 2 2 2 1 FtsX-like permease family Tmemb_170 PF10190.4 gi|452207933|ref|YP_007488055.1| - 2 8.5 8.0 0.29 11.2 1.0 2.7 2 2 1 3 3 3 0 Putative transmembrane protein 170 YjgP_YjgQ PF03739.9 gi|452207933|ref|YP_007488055.1| - 3.2 6.3 9.1 0.18 10.5 2.2 1.8 2 0 0 2 2 2 0 Predicted permease YjgP/YjgQ family BPL_LplA_LipB PF03099.14 gi|452207934|ref|YP_007488056.1| - 2e-20 73.0 0.0 3.3e-20 72.3 0.0 1.3 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family HTH_11 PF08279.7 gi|452207934|ref|YP_007488056.1| - 5.8e-11 41.8 0.0 1e-10 41.0 0.0 1.4 1 0 0 1 1 1 1 HTH domain BPL_C PF02237.12 gi|452207934|ref|YP_007488056.1| - 1.8e-10 40.3 0.1 3.5e-10 39.4 0.1 1.5 1 0 0 1 1 1 1 Biotin protein ligase C terminal domain HTH_20 PF12840.2 gi|452207934|ref|YP_007488056.1| - 3.6e-08 33.0 0.0 8.3e-08 31.9 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|452207934|ref|YP_007488056.1| - 5.6e-06 25.9 0.0 1.1e-05 25.0 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|452207934|ref|YP_007488056.1| - 1.3e-05 24.4 0.0 2.4e-05 23.6 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|452207934|ref|YP_007488056.1| - 0.0081 15.8 0.0 0.044 13.4 0.0 2.2 2 0 0 2 2 2 1 MarR family Rrf2 PF02082.15 gi|452207934|ref|YP_007488056.1| - 0.036 14.1 0.0 0.076 13.1 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator HTH_23 PF13384.1 gi|452207934|ref|YP_007488056.1| - 0.11 12.2 0.0 0.23 11.1 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain Usp PF00582.21 gi|452207935|ref|YP_007488057.1| - 2.9e-30 105.2 2.7 3.4e-30 105.0 1.9 1.1 1 0 0 1 1 1 1 Universal stress protein family Amidohydro_1 PF01979.15 gi|452207936|ref|YP_007488058.1| - 1.1e-25 90.9 0.0 5.9e-25 88.6 0.0 1.8 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_4 PF13147.1 gi|452207936|ref|YP_007488058.1| - 8.2e-10 39.1 11.7 1.8e-09 38.0 8.1 1.6 1 1 0 1 1 1 1 Amidohydrolase A_deaminase PF00962.17 gi|452207936|ref|YP_007488058.1| - 3.3e-06 26.2 0.0 4.6e-06 25.7 0.0 1.1 1 0 0 1 1 1 1 Adenosine/AMP deaminase Amidohydro_5 PF13594.1 gi|452207936|ref|YP_007488058.1| - 2.4e-05 24.0 0.0 5.4e-05 22.9 0.0 1.7 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|452207936|ref|YP_007488058.1| - 0.00043 19.6 5.4 0.0039 16.4 1.1 2.5 1 1 1 2 2 2 2 Amidohydrolase family Pribosyltran PF00156.22 gi|452207937|ref|YP_007488059.1| - 4.7e-18 65.1 0.0 7.1e-18 64.5 0.0 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain ADH_zinc_N PF00107.21 gi|452207938|ref|YP_007488060.1| - 1.8e-24 85.7 0.3 3e-24 85.0 0.0 1.5 2 0 0 2 2 2 1 Zinc-binding dehydrogenase ADH_N PF08240.7 gi|452207938|ref|YP_007488060.1| - 3.8e-22 78.1 0.4 7.7e-22 77.1 0.3 1.5 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N_2 PF13602.1 gi|452207938|ref|YP_007488060.1| - 9.1e-13 49.2 0.0 1.9e-12 48.2 0.0 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Peripla_BP_6 PF13458.1 gi|452207938|ref|YP_007488060.1| - 0.012 14.9 0.0 0.016 14.5 0.0 1.3 1 0 0 1 1 1 0 Periplasmic binding protein NAD_binding_10 PF13460.1 gi|452207938|ref|YP_007488060.1| - 0.019 14.9 0.4 0.042 13.8 0.3 1.6 1 1 0 1 1 1 0 NADH(P)-binding NADH_4Fe-4S PF10589.4 gi|452207938|ref|YP_007488060.1| - 0.33 10.1 3.4 1.1 8.4 2.4 1.9 1 0 0 1 1 1 0 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region PhzC-PhzF PF02567.11 gi|452207939|ref|YP_007488061.1| - 4.3e-59 200.0 0.0 5.3e-59 199.7 0.0 1.1 1 0 0 1 1 1 1 Phenazine biosynthesis-like protein PPDK_N PF01326.14 gi|452207940|ref|YP_007488062.1| - 1.5e-104 349.6 1.7 2.4e-104 348.9 1.2 1.3 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers_C PF02896.13 gi|452207940|ref|YP_007488062.1| - 1.3e-78 263.8 0.1 1.9e-78 263.3 0.0 1.2 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilizers PF00391.18 gi|452207940|ref|YP_007488062.1| - 3.6e-29 100.1 1.9 9.3e-29 98.8 1.3 1.8 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain PEP-utilisers_N PF05524.8 gi|452207940|ref|YP_007488062.1| - 0.24 11.1 6.6 1.3 8.7 0.0 3.1 3 0 0 3 3 3 0 PEP-utilising enzyme, N-terminal Ant_C PF05586.6 gi|452207940|ref|YP_007488062.1| - 0.43 11.0 2.8 2.2 8.7 0.0 2.9 3 0 0 3 3 3 0 Anthrax receptor C-terminus region Pyridoxal_deC PF00282.14 gi|452207941|ref|YP_007488063.1| - 1.5e-21 76.2 0.0 2e-21 75.8 0.0 1.2 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain Aminotran_5 PF00266.14 gi|452207941|ref|YP_007488063.1| - 2.4e-07 29.8 0.0 4.5e-07 28.9 0.0 1.4 1 1 0 1 1 1 1 Aminotransferase class-V SHMT PF00464.14 gi|452207941|ref|YP_007488063.1| - 0.18 10.1 0.0 0.29 9.4 0.0 1.3 1 0 0 1 1 1 0 Serine hydroxymethyltransferase tRNA-synt_1g PF09334.6 gi|452207942|ref|YP_007488064.1| - 9.3e-125 416.3 0.0 1.1e-124 416.0 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (M) tRNA_bind PF01588.15 gi|452207942|ref|YP_007488064.1| - 2.4e-21 75.3 0.0 4.2e-21 74.5 0.0 1.4 1 0 0 1 1 1 1 Putative tRNA binding domain tRNA-synt_1 PF00133.17 gi|452207942|ref|YP_007488064.1| - 1.4e-08 33.2 0.0 1e-05 23.7 0.1 2.7 2 1 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.8 gi|452207942|ref|YP_007488064.1| - 2.2e-06 27.5 0.0 3.7e-06 26.7 0.0 1.3 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1e PF01406.14 gi|452207942|ref|YP_007488064.1| - 1.3e-05 24.4 0.0 0.00029 20.0 0.0 2.1 2 0 0 2 2 2 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1d PF00750.14 gi|452207942|ref|YP_007488064.1| - 0.019 13.8 0.1 0.035 12.9 0.0 1.3 1 0 0 1 1 1 0 tRNA synthetases class I (R) NfeD PF01957.13 gi|452207944|ref|YP_007488066.1| - 4.8e-14 52.7 2.5 6.5e-14 52.2 1.7 1.1 1 0 0 1 1 1 1 NfeD-like C-terminal, partner-binding DUF4307 PF14155.1 gi|452207944|ref|YP_007488066.1| - 0.99 9.2 0.0 0.99 9.2 0.0 2.3 3 0 0 3 3 3 0 Domain of unknown function (DUF4307) DUF308 PF03729.8 gi|452207944|ref|YP_007488066.1| - 1.5 8.8 16.2 4.5 7.3 0.5 2.1 1 1 1 2 2 2 0 Short repeat of unknown function (DUF308) adh_short PF00106.20 gi|452207945|ref|YP_007488067.1| - 8.1e-35 120.1 4.9 1.1e-34 119.7 3.4 1.2 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|452207945|ref|YP_007488067.1| - 4.1e-14 52.6 1.6 6e-14 52.1 1.1 1.2 1 0 0 1 1 1 1 KR domain adh_short_C2 PF13561.1 gi|452207945|ref|YP_007488067.1| - 2.6e-13 50.3 0.0 3.6e-13 49.8 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase NmrA PF05368.8 gi|452207945|ref|YP_007488067.1| - 0.04 13.1 0.5 0.055 12.7 0.3 1.2 1 0 0 1 1 1 0 NmrA-like family NAD_binding_10 PF13460.1 gi|452207945|ref|YP_007488067.1| - 0.046 13.7 1.2 0.072 13.0 0.8 1.3 1 0 0 1 1 1 0 NADH(P)-binding Cpn60_TCP1 PF00118.19 gi|452207946|ref|YP_007488068.1| - 4.7e-140 467.4 1.1 5.3e-140 467.2 0.7 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family Glycos_transf_2 PF00535.21 gi|452207947|ref|YP_007488069.1| - 5.7e-13 48.9 0.0 1.1e-12 47.9 0.0 1.6 1 1 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|452207947|ref|YP_007488069.1| - 4.3e-06 26.6 0.1 3.5e-05 23.7 0.1 2.1 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Methyltransf_11 PF08241.7 gi|452207948|ref|YP_007488070.1| - 2.9e-22 78.9 0.0 4.5e-22 78.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|452207948|ref|YP_007488070.1| - 2.1e-19 69.5 0.0 2.8e-19 69.1 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|452207948|ref|YP_007488070.1| - 9.1e-18 64.8 0.0 1.4e-17 64.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|452207948|ref|YP_007488070.1| - 4.6e-16 59.0 0.0 7e-16 58.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|452207948|ref|YP_007488070.1| - 3.4e-15 56.1 0.0 4.5e-15 55.7 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|452207948|ref|YP_007488070.1| - 2.9e-14 52.7 0.0 4.2e-14 52.2 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_26 PF13659.1 gi|452207948|ref|YP_007488070.1| - 3e-13 49.8 0.0 4.1e-13 49.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|452207948|ref|YP_007488070.1| - 4.2e-13 49.6 0.0 6e-13 49.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|452207948|ref|YP_007488070.1| - 2.1e-07 30.6 0.0 3.8e-07 29.8 0.0 1.4 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 MTS PF05175.9 gi|452207948|ref|YP_007488070.1| - 2e-06 27.3 0.0 2.8e-06 26.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain RrnaAD PF00398.15 gi|452207948|ref|YP_007488070.1| - 0.00011 21.3 0.0 0.00013 21.1 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_9 PF08003.6 gi|452207948|ref|YP_007488070.1| - 0.00026 19.7 0.0 0.00044 19.0 0.0 1.3 1 1 0 1 1 1 1 Protein of unknown function (DUF1698) MetW PF07021.7 gi|452207948|ref|YP_007488070.1| - 0.00028 20.3 0.0 0.0004 19.8 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_20 PF12147.3 gi|452207948|ref|YP_007488070.1| - 0.00055 18.9 0.0 0.00087 18.2 0.0 1.3 1 0 0 1 1 1 1 Putative methyltransferase Methyltransf_15 PF09445.5 gi|452207948|ref|YP_007488070.1| - 0.00055 19.5 0.0 0.00064 19.3 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase TPMT PF05724.6 gi|452207948|ref|YP_007488070.1| - 0.0014 18.1 0.0 0.002 17.6 0.0 1.2 1 0 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) Methyltransf_3 PF01596.12 gi|452207948|ref|YP_007488070.1| - 0.0014 17.6 0.0 0.0023 17.0 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase PCMT PF01135.14 gi|452207948|ref|YP_007488070.1| - 0.0028 17.2 0.0 0.0036 16.8 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_4 PF02390.12 gi|452207948|ref|YP_007488070.1| - 0.0029 16.6 0.0 0.0066 15.5 0.0 1.6 1 1 1 2 2 2 1 Putative methyltransferase TehB PF03848.9 gi|452207948|ref|YP_007488070.1| - 0.0056 15.8 0.0 0.0079 15.3 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB FmrO PF07091.6 gi|452207948|ref|YP_007488070.1| - 0.009 15.0 0.0 0.013 14.4 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA methyltransferase (FmrO) NodS PF05401.6 gi|452207948|ref|YP_007488070.1| - 0.047 13.0 0.0 0.061 12.7 0.0 1.1 1 0 0 1 1 1 0 Nodulation protein S (NodS) tRNA_U5-meth_tr PF05958.6 gi|452207948|ref|YP_007488070.1| - 0.048 12.3 0.0 0.062 11.9 0.0 1.1 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase DUF938 PF06080.7 gi|452207948|ref|YP_007488070.1| - 0.11 11.9 0.0 0.24 10.8 0.0 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF938) FtsJ PF01728.14 gi|452207948|ref|YP_007488070.1| - 0.17 11.8 0.0 0.21 11.5 0.0 1.3 1 0 0 1 1 1 0 FtsJ-like methyltransferase HTH_24 PF13412.1 gi|452207949|ref|YP_007488071.1| - 2.3e-05 23.6 0.1 3.1e-05 23.2 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|452207949|ref|YP_007488071.1| - 4.9e-05 22.9 0.1 6.4e-05 22.5 0.1 1.2 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|452207949|ref|YP_007488071.1| - 6e-05 22.7 0.2 8e-05 22.3 0.1 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain GntR PF00392.16 gi|452207949|ref|YP_007488071.1| - 0.00041 19.7 0.9 0.00066 19.0 0.4 1.5 1 1 0 1 1 1 1 Bacterial regulatory proteins, gntR family MarR PF01047.17 gi|452207949|ref|YP_007488071.1| - 0.004 16.8 0.0 0.0062 16.2 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_12 PF08461.5 gi|452207949|ref|YP_007488071.1| - 0.011 15.4 0.2 0.039 13.6 0.1 1.9 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain TrmB PF01978.14 gi|452207949|ref|YP_007488071.1| - 0.013 15.1 0.1 0.02 14.6 0.1 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.1 gi|452207949|ref|YP_007488071.1| - 0.038 14.3 0.0 0.066 13.5 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_36 PF13730.1 gi|452207949|ref|YP_007488071.1| - 0.038 14.1 0.0 0.065 13.3 0.0 1.4 1 1 0 1 1 1 0 Helix-turn-helix domain RNA_pol_Rpc34 PF05158.7 gi|452207949|ref|YP_007488071.1| - 0.047 12.8 0.0 0.05 12.7 0.0 1.0 1 0 0 1 1 1 0 RNA polymerase Rpc34 subunit HTH_IclR PF09339.5 gi|452207949|ref|YP_007488071.1| - 0.049 13.2 0.1 0.079 12.5 0.1 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain TFIIE_alpha PF02002.12 gi|452207949|ref|YP_007488071.1| - 0.052 13.0 0.0 0.061 12.8 0.0 1.2 1 0 0 1 1 1 0 TFIIE alpha subunit Rrf2 PF02082.15 gi|452207949|ref|YP_007488071.1| - 0.064 13.3 0.0 0.087 12.9 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator QRPTase_C PF01729.14 gi|452207950|ref|YP_007488072.1| - 1.1e-18 67.3 0.0 1.9e-18 66.5 0.0 1.4 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.11 gi|452207950|ref|YP_007488072.1| - 0.0075 16.0 0.0 0.028 14.2 0.0 1.9 2 0 0 2 2 2 1 Quinolinate phosphoribosyl transferase, N-terminal domain RIO1 PF01163.17 gi|452207951|ref|YP_007488073.1| - 1.1e-58 197.6 0.1 1.8e-58 197.0 0.0 1.3 2 0 0 2 2 2 1 RIO1 family APH PF01636.18 gi|452207951|ref|YP_007488073.1| - 1.1e-09 38.4 0.4 0.00013 21.7 0.0 2.7 1 1 1 2 2 2 2 Phosphotransferase enzyme family Kdo PF06293.9 gi|452207951|ref|YP_007488073.1| - 1.6e-06 27.3 0.0 3.3e-06 26.3 0.0 1.5 1 0 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family Pkinase PF00069.20 gi|452207951|ref|YP_007488073.1| - 0.00012 21.3 0.0 0.00032 19.9 0.0 1.6 1 1 0 1 1 1 1 Protein kinase domain WaaY PF06176.6 gi|452207951|ref|YP_007488073.1| - 0.056 12.6 0.1 0.13 11.5 0.0 1.6 2 0 0 2 2 2 0 Lipopolysaccharide core biosynthesis protein (WaaY) Citrate_synt PF00285.16 gi|452207952|ref|YP_007488074.1| - 7.3e-127 422.9 0.0 8.3e-127 422.7 0.0 1.0 1 0 0 1 1 1 1 Citrate synthase AstE_AspA PF04952.9 gi|452207953|ref|YP_007488075.1| - 7.3e-58 195.7 0.0 8.4e-58 195.5 0.0 1.0 1 0 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family DUF1743 PF08489.6 gi|452207954|ref|YP_007488076.1| - 7.4e-36 122.4 0.0 1.7e-35 121.3 0.0 1.6 2 0 0 2 2 2 1 Domain of unknown function (DUF1743) tRNA_anti-codon PF01336.20 gi|452207954|ref|YP_007488076.1| - 2.1e-06 27.4 0.1 4.3e-06 26.4 0.1 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA_anti_2 PF13742.1 gi|452207954|ref|YP_007488076.1| - 0.0088 15.8 0.0 0.017 14.9 0.0 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain OrfB_Zn_ribbon PF07282.6 gi|452207954|ref|YP_007488076.1| - 0.012 15.2 1.1 0.026 14.1 0.8 1.5 1 0 0 1 1 1 0 Putative transposase DNA-binding domain C1_1 PF00130.17 gi|452207954|ref|YP_007488076.1| - 0.11 12.2 0.3 0.21 11.3 0.2 1.4 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zinc-ribbons_6 PF07191.7 gi|452207954|ref|YP_007488076.1| - 0.12 12.1 0.9 0.23 11.2 0.6 1.4 1 0 0 1 1 1 0 zinc-ribbons Zn_Tnp_IS1595 PF12760.2 gi|452207954|ref|YP_007488076.1| - 0.16 11.7 2.7 0.8 9.5 0.5 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|452207954|ref|YP_007488076.1| - 0.28 11.1 2.0 15 5.6 0.2 2.6 2 0 0 2 2 2 0 Zinc ribbon domain HTH_3 PF01381.17 gi|452207955|ref|YP_007488077.1| - 2.6e-08 33.5 0.0 4.3e-08 32.8 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.2 gi|452207955|ref|YP_007488077.1| - 1.5e-06 28.1 0.0 2.8e-06 27.2 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|452207955|ref|YP_007488077.1| - 0.00013 21.5 0.0 0.00035 20.1 0.0 1.7 1 0 0 1 1 1 1 HTH domain HTH_31 PF13560.1 gi|452207955|ref|YP_007488077.1| - 0.00029 20.9 0.0 0.00076 19.6 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|452207955|ref|YP_007488077.1| - 0.0058 15.9 0.0 0.011 15.1 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding GntR PF00392.16 gi|452207955|ref|YP_007488077.1| - 0.011 15.1 0.0 0.026 13.9 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_38 PF13936.1 gi|452207955|ref|YP_007488077.1| - 0.011 15.2 0.0 0.036 13.6 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_28 PF13518.1 gi|452207955|ref|YP_007488077.1| - 0.012 15.5 0.0 0.037 14.0 0.0 1.8 1 1 1 2 2 2 0 Helix-turn-helix domain MarR PF01047.17 gi|452207955|ref|YP_007488077.1| - 0.02 14.5 0.0 0.11 12.2 0.0 2.0 2 0 0 2 2 2 0 MarR family HTH_DeoR PF08220.7 gi|452207955|ref|YP_007488077.1| - 0.024 14.1 0.0 0.045 13.2 0.0 1.5 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_psq PF05225.11 gi|452207955|ref|YP_007488077.1| - 0.027 14.0 0.0 0.047 13.2 0.0 1.4 1 0 0 1 1 1 0 helix-turn-helix, Psq domain HTH_20 PF12840.2 gi|452207955|ref|YP_007488077.1| - 0.031 14.0 0.0 0.11 12.2 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_26 PF13443.1 gi|452207955|ref|YP_007488077.1| - 0.032 14.4 0.0 0.061 13.5 0.0 1.5 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain HTH_23 PF13384.1 gi|452207955|ref|YP_007488077.1| - 0.042 13.5 0.0 0.12 12.0 0.0 1.8 1 0 0 1 1 1 0 Homeodomain-like domain HTH_AsnC-type PF13404.1 gi|452207955|ref|YP_007488077.1| - 0.046 13.2 0.0 0.13 11.7 0.0 1.8 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain Sigma70_r4 PF04545.11 gi|452207955|ref|YP_007488077.1| - 0.048 12.9 0.1 0.1 11.9 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_7 PF02796.10 gi|452207955|ref|YP_007488077.1| - 0.066 13.0 0.0 0.13 12.1 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase MarR_2 PF12802.2 gi|452207955|ref|YP_007488077.1| - 0.095 12.3 0.0 0.28 10.9 0.0 1.8 1 0 0 1 1 1 0 MarR family NUMOD1 PF07453.8 gi|452207955|ref|YP_007488077.1| - 0.1 12.4 0.0 0.2 11.5 0.0 1.5 1 0 0 1 1 1 0 NUMOD1 domain HTH_25 PF13413.1 gi|452207955|ref|YP_007488077.1| - 0.22 11.1 0.1 0.22 11.1 0.1 1.7 2 0 0 2 2 1 0 Helix-turn-helix domain DUF58 PF01882.13 gi|452207956|ref|YP_007488078.1| - 8.2e-20 70.7 0.3 4.1e-19 68.4 0.0 2.2 2 0 0 2 2 2 1 Protein of unknown function DUF58 VWA_CoxE PF05762.9 gi|452207956|ref|YP_007488078.1| - 0.0051 15.9 0.9 0.021 13.9 0.6 1.9 1 1 0 1 1 1 1 VWA domain containing CoxE-like protein VWA_2 PF13519.1 gi|452207956|ref|YP_007488078.1| - 0.013 15.6 0.0 0.021 14.9 0.0 1.4 1 0 0 1 1 1 0 von Willebrand factor type A domain AAA_3 PF07726.6 gi|452207957|ref|YP_007488079.1| - 7.3e-62 206.7 0.1 1.2e-61 206.1 0.1 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|452207957|ref|YP_007488079.1| - 2.6e-14 53.1 0.0 5.3e-14 52.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.24 gi|452207957|ref|YP_007488079.1| - 1.9e-08 34.6 0.0 3.5e-08 33.7 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) MCM PF00493.18 gi|452207957|ref|YP_007488079.1| - 6.6e-07 28.4 0.1 2.7e-05 23.1 0.0 2.3 2 1 0 2 2 2 1 MCM2/3/5 family Sigma54_activat PF00158.21 gi|452207957|ref|YP_007488079.1| - 8.8e-05 22.0 0.0 0.014 14.8 0.0 2.2 2 0 0 2 2 2 1 Sigma-54 interaction domain RuvB_N PF05496.7 gi|452207957|ref|YP_007488079.1| - 0.00022 20.3 0.2 0.0016 17.4 0.1 2.2 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus Mg_chelatase PF01078.16 gi|452207957|ref|YP_007488079.1| - 0.00022 20.4 0.0 0.0034 16.5 0.0 2.2 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_2 PF07724.9 gi|452207957|ref|YP_007488079.1| - 0.00029 20.7 0.0 0.00057 19.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_16 PF13191.1 gi|452207957|ref|YP_007488079.1| - 0.0018 18.3 0.4 0.0052 16.8 0.1 1.9 2 1 0 2 2 2 1 AAA ATPase domain Viral_helicase1 PF01443.13 gi|452207957|ref|YP_007488079.1| - 0.009 15.5 0.0 0.3 10.5 0.0 2.2 2 0 0 2 2 2 1 Viral (Superfamily 1) RNA helicase AAA_22 PF13401.1 gi|452207957|ref|YP_007488079.1| - 0.021 14.9 0.0 0.054 13.6 0.0 1.8 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|452207957|ref|YP_007488079.1| - 0.091 12.7 0.0 0.22 11.4 0.0 1.8 1 1 0 1 1 1 0 AAA domain DUF815 PF05673.8 gi|452207957|ref|YP_007488079.1| - 0.15 10.9 0.0 6.4 5.6 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF815) MscS_TM PF12794.2 gi|452207958|ref|YP_007488080.1| - 0.068 11.7 0.0 0.13 10.8 0.0 1.5 2 0 0 2 2 2 0 Mechanosensitive ion channel inner membrane domain 1 CENP-F_leu_zip PF10473.4 gi|452207959|ref|YP_007488081.1| - 8.4e-06 25.6 44.3 7e-05 22.7 12.3 2.0 1 1 1 2 2 2 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 ERM PF00769.14 gi|452207959|ref|YP_007488081.1| - 4.5e-05 23.1 30.8 4.5e-05 23.1 21.4 2.0 1 1 1 2 2 2 1 Ezrin/radixin/moesin family Tropomyosin PF00261.15 gi|452207959|ref|YP_007488081.1| - 7.6e-05 21.9 36.4 7.6e-05 21.9 25.2 2.0 1 1 1 2 2 2 1 Tropomyosin TBPIP PF07106.8 gi|452207959|ref|YP_007488081.1| - 0.00015 21.3 30.4 0.017 14.6 7.3 2.1 1 1 1 2 2 2 2 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) IncA PF04156.9 gi|452207959|ref|YP_007488081.1| - 0.00015 21.3 21.3 0.00015 21.3 14.7 2.8 1 1 1 2 2 2 1 IncA protein AAA_13 PF13166.1 gi|452207959|ref|YP_007488081.1| - 0.0002 19.9 23.2 0.00026 19.6 16.1 1.0 1 0 0 1 1 1 1 AAA domain APG6 PF04111.7 gi|452207959|ref|YP_007488081.1| - 0.00027 20.0 41.8 0.00057 19.0 16.4 2.0 1 1 1 2 2 2 2 Autophagy protein Apg6 Atg14 PF10186.4 gi|452207959|ref|YP_007488081.1| - 0.00089 18.2 28.6 0.021 13.7 8.6 2.0 1 1 1 2 2 2 2 UV radiation resistance protein and autophagy-related subunit 14 MscS_porin PF12795.2 gi|452207959|ref|YP_007488081.1| - 0.0018 17.6 41.2 0.1 11.8 23.5 2.4 1 1 1 2 2 2 2 Mechanosensitive ion channel porin domain Reo_sigmaC PF04582.7 gi|452207959|ref|YP_007488081.1| - 0.0019 17.4 13.1 0.007 15.5 2.6 2.0 1 1 1 2 2 2 1 Reovirus sigma C capsid protein Filament PF00038.16 gi|452207959|ref|YP_007488081.1| - 0.002 17.6 35.1 0.0078 15.7 9.1 2.2 1 1 1 2 2 2 1 Intermediate filament protein DUF3450 PF11932.3 gi|452207959|ref|YP_007488081.1| - 0.0021 17.3 30.0 0.0038 16.5 8.9 2.0 1 1 1 2 2 2 1 Protein of unknown function (DUF3450) DUF4200 PF13863.1 gi|452207959|ref|YP_007488081.1| - 0.0022 17.9 38.1 0.23 11.4 18.4 2.4 1 1 1 2 2 2 2 Domain of unknown function (DUF4200) Spc7 PF08317.6 gi|452207959|ref|YP_007488081.1| - 0.0022 16.6 20.4 0.0022 16.6 14.1 2.0 1 1 1 2 2 2 2 Spc7 kinetochore protein DUF2968 PF11180.3 gi|452207959|ref|YP_007488081.1| - 0.0031 16.9 15.9 0.0031 16.9 11.0 2.4 1 1 1 2 2 2 1 Protein of unknown function (DUF2968) ATG16 PF08614.6 gi|452207959|ref|YP_007488081.1| - 0.0033 17.2 39.9 0.015 15.0 14.8 2.1 1 1 1 2 2 2 1 Autophagy protein 16 (ATG16) DUF869 PF05911.6 gi|452207959|ref|YP_007488081.1| - 0.0038 15.5 32.3 0.011 13.9 22.4 1.5 1 1 0 1 1 1 1 Plant protein of unknown function (DUF869) DUF3552 PF12072.3 gi|452207959|ref|YP_007488081.1| - 0.0039 16.4 16.4 0.0039 16.4 11.4 2.3 1 1 1 2 2 2 1 Domain of unknown function (DUF3552) GAS PF13851.1 gi|452207959|ref|YP_007488081.1| - 0.0041 16.3 31.2 0.052 12.7 15.6 2.3 1 1 1 2 2 2 1 Growth-arrest specific micro-tubule binding CCDC144C PF14915.1 gi|452207959|ref|YP_007488081.1| - 0.0065 15.4 35.2 0.048 12.5 13.3 2.1 1 1 1 2 2 2 2 CCDC144C protein coiled-coil region HrpB7 PF09486.5 gi|452207959|ref|YP_007488081.1| - 0.0075 16.2 32.2 1.5 8.7 2.2 3.4 1 1 1 2 2 2 0 Bacterial type III secretion protein (HrpB7) Spectrin PF00435.16 gi|452207959|ref|YP_007488081.1| - 0.008 16.4 21.5 0.008 16.4 14.9 2.1 1 1 1 2 2 2 1 Spectrin repeat Prefoldin_2 PF01920.15 gi|452207959|ref|YP_007488081.1| - 0.0081 15.9 36.7 0.11 12.2 5.2 3.9 1 1 2 3 3 3 2 Prefoldin subunit DUF972 PF06156.8 gi|452207959|ref|YP_007488081.1| - 0.0085 16.4 27.9 0.095 13.0 6.6 3.1 1 1 2 3 3 3 1 Protein of unknown function (DUF972) Mnd1 PF03962.10 gi|452207959|ref|YP_007488081.1| - 0.0086 15.7 37.2 0.17 11.5 10.2 2.1 1 1 1 2 2 2 2 Mnd1 family TPR_MLP1_2 PF07926.7 gi|452207959|ref|YP_007488081.1| - 0.0097 15.6 42.7 0.12 12.0 26.9 3.0 1 1 0 1 1 1 1 TPR/MLP1/MLP2-like protein FliJ PF02050.11 gi|452207959|ref|YP_007488081.1| - 0.011 15.7 27.7 0.015 15.3 7.3 2.5 1 1 2 3 3 3 0 Flagellar FliJ protein DUF3186 PF11382.3 gi|452207959|ref|YP_007488081.1| - 0.011 14.8 1.6 0.011 14.8 1.1 3.6 1 1 1 2 2 1 0 Protein of unknown function (DUF3186) DUF2681 PF10883.3 gi|452207959|ref|YP_007488081.1| - 0.012 15.8 0.8 0.012 15.8 0.6 3.4 1 1 2 3 3 2 0 Protein of unknown function (DUF2681) Tropomyosin_1 PF12718.2 gi|452207959|ref|YP_007488081.1| - 0.012 15.4 51.7 0.27 11.0 8.6 2.7 1 1 1 2 2 2 0 Tropomyosin like Fez1 PF06818.10 gi|452207959|ref|YP_007488081.1| - 0.015 15.3 20.0 0.015 15.3 13.8 2.1 1 1 1 2 2 2 0 Fez1 DUF4618 PF15397.1 gi|452207959|ref|YP_007488081.1| - 0.016 14.5 31.6 0.13 11.6 3.9 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4618) COG2 PF06148.6 gi|452207959|ref|YP_007488081.1| - 0.018 14.9 21.6 0.077 12.8 4.2 3.2 1 1 2 3 3 3 0 COG (conserved oligomeric Golgi) complex component, COG2 CALCOCO1 PF07888.6 gi|452207959|ref|YP_007488081.1| - 0.019 13.3 34.1 0.16 10.2 8.8 2.0 1 1 1 2 2 2 0 Calcium binding and coiled-coil domain (CALCOCO1) like Myosin_tail_1 PF01576.14 gi|452207959|ref|YP_007488081.1| - 0.022 12.5 45.9 0.066 10.9 31.8 1.7 1 1 0 1 1 1 0 Myosin tail DUF4201 PF13870.1 gi|452207959|ref|YP_007488081.1| - 0.029 13.8 31.2 0.62 9.4 20.6 3.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4201) HAUS5 PF14817.1 gi|452207959|ref|YP_007488081.1| - 0.029 12.9 33.3 0.16 10.5 16.8 2.4 1 1 1 2 2 2 0 HAUS augmin-like complex subunit 5 TMF_DNA_bd PF12329.3 gi|452207959|ref|YP_007488081.1| - 0.037 13.8 45.8 0.49 10.2 6.6 4.0 1 1 4 5 5 5 0 TATA element modulatory factor 1 DNA binding Cast PF10174.4 gi|452207959|ref|YP_007488081.1| - 0.038 12.0 38.2 0.065 11.2 22.7 2.1 1 1 1 2 2 2 0 RIM-binding protein of the cytomatrix active zone Laminin_I PF06008.9 gi|452207959|ref|YP_007488081.1| - 0.038 13.2 35.0 0.44 9.8 23.4 2.4 1 1 0 1 1 1 0 Laminin Domain I DUF342 PF03961.8 gi|452207959|ref|YP_007488081.1| - 0.046 12.1 22.0 0.059 11.7 7.0 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF342) WEMBL PF05701.6 gi|452207959|ref|YP_007488081.1| - 0.05 12.0 34.8 0.081 11.3 24.1 1.3 1 0 0 1 1 1 0 Weak chloroplast movement under blue light V_ATPase_I PF01496.14 gi|452207959|ref|YP_007488081.1| - 0.056 11.3 29.2 0.33 8.7 7.5 2.0 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family Laminin_II PF06009.7 gi|452207959|ref|YP_007488081.1| - 0.058 13.1 20.6 0.055 13.2 8.5 2.6 1 1 1 2 2 2 0 Laminin Domain II DUF1664 PF07889.7 gi|452207959|ref|YP_007488081.1| - 0.07 12.9 18.9 1 9.1 2.7 2.6 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) ADIP PF11559.3 gi|452207959|ref|YP_007488081.1| - 0.086 12.7 38.7 0.39 10.5 12.1 3.0 1 1 2 3 3 3 0 Afadin- and alpha -actinin-Binding Fib_alpha PF08702.5 gi|452207959|ref|YP_007488081.1| - 0.14 12.3 20.0 0.21 11.6 5.4 2.1 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family PEARLI-4 PF05278.7 gi|452207959|ref|YP_007488081.1| - 0.15 11.3 20.0 0.013 14.8 7.0 2.3 1 1 1 2 2 2 0 Arabidopsis phospholipase-like protein (PEARLI 4) Snapin_Pallidin PF14712.1 gi|452207959|ref|YP_007488081.1| - 0.18 12.1 22.5 0.058 13.7 6.0 3.0 1 1 2 3 3 3 0 Snapin/Pallidin Mod_r PF07200.8 gi|452207959|ref|YP_007488081.1| - 0.18 11.7 32.4 0.48 10.3 13.1 2.1 1 1 1 2 2 2 0 Modifier of rudimentary (Mod(r)) protein DUF641 PF04859.7 gi|452207959|ref|YP_007488081.1| - 0.19 11.4 25.4 0.82 9.4 1.6 3.5 1 1 3 4 4 4 0 Plant protein of unknown function (DUF641) Tektin PF03148.9 gi|452207959|ref|YP_007488081.1| - 0.21 10.1 30.9 1.7 7.0 11.0 2.3 1 1 1 2 2 2 0 Tektin family FliD_C PF07195.7 gi|452207959|ref|YP_007488081.1| - 0.21 10.8 18.3 1.2 8.3 3.0 2.8 1 1 1 2 2 2 0 Flagellar hook-associated protein 2 C-terminus BLOC1_2 PF10046.4 gi|452207959|ref|YP_007488081.1| - 0.26 11.4 23.1 0.08 13.0 5.8 3.3 1 1 1 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 PspA_IM30 PF04012.7 gi|452207959|ref|YP_007488081.1| - 0.26 10.5 34.5 0.41 9.9 15.1 2.5 1 1 1 2 2 2 0 PspA/IM30 family CCDC155 PF14662.1 gi|452207959|ref|YP_007488081.1| - 0.27 10.8 39.2 1.5 8.3 9.2 2.0 1 1 1 2 2 2 0 Coiled-coil region of CCDC155 IFT57 PF10498.4 gi|452207959|ref|YP_007488081.1| - 0.28 9.8 26.0 2.4 6.8 18.0 2.0 1 1 0 1 1 1 0 Intra-flagellar transport protein 57 E2R135 PF11570.3 gi|452207959|ref|YP_007488081.1| - 0.28 11.2 23.3 0.064 13.3 9.3 2.2 1 1 1 2 2 2 0 Coiled-coil receptor-binding R-domain of colicin E2 MAD PF05557.8 gi|452207959|ref|YP_007488081.1| - 0.33 8.9 34.9 1.4 6.8 24.2 1.7 1 1 0 1 1 1 0 Mitotic checkpoint protein bZIP_1 PF00170.16 gi|452207959|ref|YP_007488081.1| - 0.38 10.7 30.7 0.1 12.5 4.1 4.2 1 1 2 3 3 2 0 bZIP transcription factor THOC7 PF05615.8 gi|452207959|ref|YP_007488081.1| - 0.44 10.8 33.7 3.3 7.9 5.9 3.0 1 1 2 3 3 3 0 Tho complex subunit 7 Prominin PF05478.6 gi|452207959|ref|YP_007488081.1| - 0.46 7.9 19.7 0.56 7.6 13.7 1.0 1 0 0 1 1 1 0 Prominin WXG100 PF06013.7 gi|452207959|ref|YP_007488081.1| - 0.54 10.3 22.1 1.2 9.2 0.2 3.9 1 1 2 3 3 3 0 Proteins of 100 residues with WXG DUF948 PF06103.6 gi|452207959|ref|YP_007488081.1| - 0.85 9.5 15.4 6.8e+03 -3.0 10.7 3.4 1 1 0 1 1 0 0 Bacterial protein of unknown function (DUF948) DivIC PF04977.10 gi|452207959|ref|YP_007488081.1| - 0.85 9.1 42.0 2.9 7.4 2.8 4.9 1 1 2 3 3 2 0 Septum formation initiator HALZ PF02183.13 gi|452207959|ref|YP_007488081.1| - 0.93 9.2 26.9 0.12 12.1 1.3 4.3 3 1 1 4 4 4 0 Homeobox associated leucine zipper Bap31 PF05529.7 gi|452207959|ref|YP_007488081.1| - 0.93 8.9 25.8 4 6.8 9.5 2.5 1 1 1 2 2 2 0 B-cell receptor-associated protein 31-like Macoilin PF09726.4 gi|452207959|ref|YP_007488081.1| - 0.95 7.6 25.3 1.2 7.3 17.5 1.0 1 0 0 1 1 1 0 Transmembrane protein Spc24 PF08286.6 gi|452207959|ref|YP_007488081.1| - 1 9.1 40.2 1 9.0 3.7 4.0 1 1 1 2 2 1 0 Spc24 subunit of Ndc80 DUF3735 PF12537.3 gi|452207959|ref|YP_007488081.1| - 1 9.4 11.7 1.2 9.2 1.5 3.4 1 1 1 2 2 2 0 Protein of unknown function (DUF3735) OmpH PF03938.9 gi|452207959|ref|YP_007488081.1| - 1.2 9.0 39.2 1.5e+04 -8.5 27.2 2.6 1 1 0 1 1 0 0 Outer membrane protein (OmpH-like) Baculo_PEP_C PF04513.7 gi|452207959|ref|YP_007488081.1| - 1.4 8.7 21.3 17 5.2 7.4 2.6 1 1 1 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus Bacillus_HBL PF05791.6 gi|452207959|ref|YP_007488081.1| - 1.4 8.2 20.1 1.6 8.0 4.3 2.4 1 1 1 2 2 2 0 Bacillus haemolytic enterotoxin (HBL) Rootletin PF15035.1 gi|452207959|ref|YP_007488081.1| - 1.5 8.7 41.1 7.5 6.4 12.3 2.8 1 1 2 3 3 3 0 Ciliary rootlet component, centrosome cohesion DUF1049 PF06305.6 gi|452207959|ref|YP_007488081.1| - 1.5 8.3 0.0 1.5 8.3 0.0 4.3 2 1 1 4 4 3 0 Protein of unknown function (DUF1049) DUF3584 PF12128.3 gi|452207959|ref|YP_007488081.1| - 1.7 5.8 39.4 4.8 4.3 26.1 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF3584) PilJ PF13675.1 gi|452207959|ref|YP_007488081.1| - 1.9 8.8 23.2 0.39 11.0 5.8 2.3 1 1 1 2 2 2 0 Type IV pili methyl-accepting chemotaxis transducer N-term Lectin_N PF03954.9 gi|452207959|ref|YP_007488081.1| - 2 7.8 17.2 2.2 7.6 1.7 3.1 1 1 1 2 2 2 0 Hepatic lectin, N-terminal domain DUF2605 PF10792.4 gi|452207959|ref|YP_007488081.1| - 2.1 8.0 11.7 0.45 10.2 2.1 2.9 1 1 0 2 2 2 0 Protein of unknown function (DUF2605) Cep57_CLD PF14073.1 gi|452207959|ref|YP_007488081.1| - 2.3 8.0 30.5 1 9.1 19.2 1.7 1 1 1 2 2 2 0 Centrosome localisation domain of Cep57 BRE1 PF08647.6 gi|452207959|ref|YP_007488081.1| - 2.3 8.2 29.4 0.042 13.8 8.6 2.9 1 1 2 3 3 2 0 BRE1 E3 ubiquitin ligase DUF812 PF05667.6 gi|452207959|ref|YP_007488081.1| - 2.4 6.5 32.3 4.5 5.6 8.1 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF812) Ax_dynein_light PF10211.4 gi|452207959|ref|YP_007488081.1| - 2.4 7.9 36.1 0.81 9.5 5.6 3.1 1 1 2 3 3 2 0 Axonemal dynein light chain Golgin_A5 PF09787.4 gi|452207959|ref|YP_007488081.1| - 2.8 6.3 28.4 11 4.4 19.7 1.7 1 1 0 1 1 1 0 Golgin subfamily A member 5 WD40_alt PF14077.1 gi|452207959|ref|YP_007488081.1| - 2.9 7.5 8.0 4 7.1 0.6 3.2 1 1 1 2 2 2 0 Alternative WD40 repeat motif DUF2333 PF10095.4 gi|452207959|ref|YP_007488081.1| - 3.5 6.1 10.9 3.1 6.3 6.6 1.5 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2333) DUF745 PF05335.8 gi|452207959|ref|YP_007488081.1| - 3.7 7.0 24.1 2.1 7.8 12.4 2.1 1 1 2 3 3 3 0 Protein of unknown function (DUF745) TMF_TATA_bd PF12325.3 gi|452207959|ref|YP_007488081.1| - 4.6 7.0 40.9 0.47 10.1 14.8 2.9 1 1 1 2 2 2 0 TATA element modulatory factor 1 TATA binding Jnk-SapK_ap_N PF09744.4 gi|452207959|ref|YP_007488081.1| - 4.6 7.2 35.5 1.5 8.8 13.0 2.1 1 1 1 2 2 2 0 JNK_SAPK-associated protein-1 Cortex-I_coil PF09304.5 gi|452207959|ref|YP_007488081.1| - 4.8 7.2 38.4 15 5.6 14.9 2.7 1 1 1 2 2 2 0 Cortexillin I, coiled coil DUF4140 PF13600.1 gi|452207959|ref|YP_007488081.1| - 5.7 7.4 41.1 21 5.6 5.5 4.3 1 1 1 2 2 1 0 N-terminal domain of unknown function (DUF4140) DUF4398 PF14346.1 gi|452207959|ref|YP_007488081.1| - 5.9 6.9 34.4 0.46 10.5 14.3 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4398) DivIVA PF05103.8 gi|452207959|ref|YP_007488081.1| - 6.1 6.8 34.0 9.8 6.2 4.0 2.7 1 1 1 2 2 2 0 DivIVA protein Seryl_tRNA_N PF02403.17 gi|452207959|ref|YP_007488081.1| - 6.7 6.7 32.3 14 5.7 1.7 3.2 1 1 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain TMPIT PF07851.8 gi|452207959|ref|YP_007488081.1| - 6.8 5.6 19.8 1.4 7.9 5.3 2.1 1 1 1 2 2 2 0 TMPIT-like protein Astro_capsid PF03115.9 gi|452207959|ref|YP_007488081.1| - 6.9 4.7 12.5 8.9 4.4 8.7 1.1 1 0 0 1 1 1 0 Astrovirus capsid protein precursor DUF4613 PF15390.1 gi|452207959|ref|YP_007488081.1| - 7.1 4.6 12.2 8.4 4.4 8.5 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4613) NPV_P10 PF05531.7 gi|452207959|ref|YP_007488081.1| - 7.2 6.9 20.5 9.6 6.5 0.9 3.6 1 1 1 2 2 1 0 Nucleopolyhedrovirus P10 protein DUF4407 PF14362.1 gi|452207959|ref|YP_007488081.1| - 7.3 5.4 33.5 1.9e+03 -2.5 23.1 2.5 1 1 0 1 1 0 0 Domain of unknown function (DUF4407) FlaC_arch PF05377.6 gi|452207959|ref|YP_007488081.1| - 8.4 6.3 27.3 2.4 8.1 0.2 4.9 1 1 3 4 4 3 0 Flagella accessory protein C (FlaC) RTBV_P46 PF06216.6 gi|452207959|ref|YP_007488081.1| - 8.9 5.0 12.4 0.25 10.1 2.1 2.2 1 1 2 3 3 3 0 Rice tungro bacilliform virus P46 protein DASH_Spc34 PF08657.5 gi|452207959|ref|YP_007488081.1| - 9.7 5.7 33.5 0.18 11.4 2.7 2.3 1 1 2 3 3 3 0 DASH complex subunit Spc34 AAA_27 PF13514.1 gi|452207959|ref|YP_007488081.1| - 9.7 3.7 38.3 28 2.1 26.6 1.6 1 1 0 1 1 1 0 AAA domain VWA_2 PF13519.1 gi|452207960|ref|YP_007488082.1| - 2.2e-27 96.2 16.5 1.1e-24 87.4 0.1 4.9 3 2 1 4 4 4 3 von Willebrand factor type A domain VWA PF00092.23 gi|452207960|ref|YP_007488082.1| - 1.3e-16 60.7 0.9 4.9e-14 52.4 0.0 3.3 3 1 1 4 4 4 2 von Willebrand factor type A domain VWA_3 PF13768.1 gi|452207960|ref|YP_007488082.1| - 1.1e-14 54.3 0.1 1.9e-13 50.3 0.0 2.4 2 0 0 2 2 2 1 von Willebrand factor type A domain VWA_CoxE PF05762.9 gi|452207960|ref|YP_007488082.1| - 3.3e-09 36.2 6.3 8.8e-08 31.5 0.2 3.6 4 0 0 4 4 4 1 VWA domain containing CoxE-like protein DUF1355 PF07090.6 gi|452207960|ref|YP_007488082.1| - 8.8e-06 25.2 0.1 1.8e-05 24.1 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1355) DUF2201 PF09967.4 gi|452207960|ref|YP_007488082.1| - 1.9e-05 24.6 0.7 0.00011 22.2 0.1 2.6 2 0 0 2 2 2 1 VWA-like domain (DUF2201) BatA PF07584.6 gi|452207961|ref|YP_007488083.1| - 4.1e-12 46.1 0.5 4.1e-12 46.1 0.4 1.7 2 0 0 2 2 2 1 Aerotolerance regulator N-terminal VWA_2 PF13519.1 gi|452207961|ref|YP_007488083.1| - 4.5e-08 33.3 3.4 1.2e-07 32.0 2.3 1.8 1 0 0 1 1 1 1 von Willebrand factor type A domain FLgD_tudor PF13861.1 gi|452207961|ref|YP_007488083.1| - 5.1 7.1 10.3 31 4.6 0.3 3.6 2 1 1 3 3 3 0 FlgD Tudor-like domain Sod_Fe_C PF02777.13 gi|452207962|ref|YP_007488084.1| - 2.8e-36 123.5 0.3 5.7e-36 122.5 0.1 1.6 2 0 0 2 2 2 1 Iron/manganese superoxide dismutases, C-terminal domain Sod_Fe_N PF00081.17 gi|452207962|ref|YP_007488084.1| - 5.7e-29 100.2 0.4 1.1e-28 99.2 0.3 1.5 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, alpha-hairpin domain Spc7 PF08317.6 gi|452207963|ref|YP_007488085.1| - 0.00087 18.0 0.4 0.0011 17.7 0.3 1.1 1 0 0 1 1 1 1 Spc7 kinetochore protein FlaC_arch PF05377.6 gi|452207963|ref|YP_007488085.1| - 0.0033 17.2 3.2 0.0048 16.7 0.6 2.0 2 0 0 2 2 2 1 Flagella accessory protein C (FlaC) PspA_IM30 PF04012.7 gi|452207963|ref|YP_007488085.1| - 0.017 14.5 2.2 0.17 11.1 1.2 2.0 1 1 1 2 2 2 0 PspA/IM30 family NPV_P10 PF05531.7 gi|452207963|ref|YP_007488085.1| - 0.024 14.8 0.6 0.06 13.6 0.4 1.7 1 1 0 1 1 1 0 Nucleopolyhedrovirus P10 protein Med9 PF07544.8 gi|452207963|ref|YP_007488085.1| - 0.028 14.1 0.3 0.067 12.9 0.2 1.7 1 1 0 1 1 1 0 RNA polymerase II transcription mediator complex subunit 9 DivIC PF04977.10 gi|452207963|ref|YP_007488085.1| - 0.038 13.4 1.5 0.069 12.6 0.7 1.6 1 1 0 1 1 1 0 Septum formation initiator AAA_13 PF13166.1 gi|452207963|ref|YP_007488085.1| - 0.062 11.7 0.1 0.069 11.6 0.1 1.1 1 0 0 1 1 1 0 AAA domain SlyX PF04102.7 gi|452207963|ref|YP_007488085.1| - 0.1 12.9 2.2 0.32 11.4 0.9 2.1 1 1 1 2 2 2 0 SlyX DUF3068 PF11271.3 gi|452207963|ref|YP_007488085.1| - 0.11 11.5 2.0 0.11 11.5 0.9 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3068) IncA PF04156.9 gi|452207963|ref|YP_007488085.1| - 0.13 11.8 1.1 0.17 11.4 0.8 1.2 1 0 0 1 1 1 0 IncA protein PEP-utilisers_N PF05524.8 gi|452207963|ref|YP_007488085.1| - 0.28 10.9 2.8 0.38 10.5 1.3 1.6 1 1 0 1 1 1 0 PEP-utilising enzyme, N-terminal HeLo PF14479.1 gi|452207963|ref|YP_007488085.1| - 0.32 10.7 2.2 0.85 9.3 0.5 2.2 2 1 1 3 3 3 0 Prion-inhibition and propagation FAD_binding_7 PF03441.9 gi|452207964|ref|YP_007488086.1| - 5.7e-100 334.0 0.1 7.1e-100 333.7 0.1 1.1 1 0 0 1 1 1 1 FAD binding domain of DNA photolyase DNA_photolyase PF00875.13 gi|452207964|ref|YP_007488086.1| - 1.3e-41 142.0 0.1 1e-40 139.2 0.0 2.1 2 0 0 2 2 2 1 DNA photolyase TPP_enzyme_C PF02775.16 gi|452207965|ref|YP_007488087.1| - 7.5e-31 106.7 0.0 1e-30 106.3 0.0 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.14 gi|452207966|ref|YP_007488088.1| - 2.7e-52 177.5 0.1 4.8e-52 176.7 0.1 1.4 1 1 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.13 gi|452207966|ref|YP_007488088.1| - 2e-44 151.5 0.0 4.9e-44 150.2 0.0 1.6 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_N PF02776.13 gi|452207966|ref|YP_007488088.1| - 0.0012 18.3 0.4 0.0023 17.4 0.1 1.6 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ADH_N PF08240.7 gi|452207967|ref|YP_007488089.1| - 8.4e-26 89.8 1.3 8.4e-26 89.8 0.9 1.9 2 1 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|452207967|ref|YP_007488089.1| - 1e-22 80.0 1.5 2e-22 79.1 1.0 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N_assoc PF13823.1 gi|452207967|ref|YP_007488089.1| - 5.3e-05 22.7 0.0 0.00011 21.7 0.0 1.6 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-associated NADH_4Fe-4S PF10589.4 gi|452207967|ref|YP_007488089.1| - 7.3 5.8 7.0 2.6 7.2 1.9 2.5 2 0 0 2 2 2 0 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region DICT PF10069.4 gi|452207968|ref|YP_007488090.1| - 6.7e-29 100.0 0.0 9.8e-29 99.5 0.0 1.2 1 0 0 1 1 1 1 Sensory domain found in DIguanylate Cyclases & Two-component systems HTH_AsnC-type PF13404.1 gi|452207969|ref|YP_007488091.1| - 0.0025 17.3 0.3 1.9 8.1 0.0 3.8 3 1 0 3 3 3 2 AsnC-type helix-turn-helix domain Glycos_trans_3N PF02885.12 gi|452207969|ref|YP_007488091.1| - 0.66 9.5 3.6 0.84 9.2 0.6 2.3 2 0 0 2 2 2 0 Glycosyl transferase family, helical bundle domain NAD_binding_7 PF13241.1 gi|452207970|ref|YP_007488092.1| - 1.3e-20 73.6 0.0 3.2e-20 72.3 0.0 1.6 2 0 0 2 2 2 1 Putative NAD(P)-binding Sirohm_synth_M PF14824.1 gi|452207970|ref|YP_007488092.1| - 3e-05 22.9 0.0 6e-05 21.9 0.0 1.6 1 0 0 1 1 1 1 Sirohaem biosynthesis protein central CysG_dimeriser PF10414.4 gi|452207970|ref|YP_007488092.1| - 0.13 11.7 1.9 0.24 10.9 0.7 1.9 2 0 0 2 2 2 0 Sirohaem synthase dimerisation region GlutR_N PF05201.10 gi|452207971|ref|YP_007488093.1| - 3e-35 121.0 1.4 3.6e-35 120.7 0.2 1.8 2 0 0 2 2 2 1 Glutamyl-tRNAGlu reductase, N-terminal domain Shikimate_DH PF01488.15 gi|452207971|ref|YP_007488093.1| - 8.3e-30 103.6 0.3 1.9e-29 102.4 0.2 1.6 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase GlutR_dimer PF00745.15 gi|452207971|ref|YP_007488093.1| - 2.9e-18 65.6 1.1 8.5e-18 64.1 0.8 1.8 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, dimerisation domain 2-Hacid_dh_C PF02826.14 gi|452207971|ref|YP_007488093.1| - 7.8e-05 21.9 0.0 0.00013 21.1 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AdoHcyase_NAD PF00670.16 gi|452207971|ref|YP_007488093.1| - 0.0036 17.1 0.2 0.0068 16.2 0.1 1.5 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain NAD_binding_7 PF13241.1 gi|452207971|ref|YP_007488093.1| - 0.013 15.6 1.1 0.048 13.9 0.8 2.0 1 1 0 1 1 1 0 Putative NAD(P)-binding CMV_1a PF12467.3 gi|452207971|ref|YP_007488093.1| - 0.078 13.3 2.3 0.15 12.4 1.6 1.4 1 0 0 1 1 1 0 Cucumber mosaic virus 1a protein family GFO_IDH_MocA PF01408.17 gi|452207971|ref|YP_007488093.1| - 0.14 12.7 0.9 0.37 11.3 0.1 2.1 2 0 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold TrkA_N PF02254.13 gi|452207971|ref|YP_007488093.1| - 0.15 12.0 2.6 0.77 9.7 0.2 2.8 1 1 0 2 2 2 0 TrkA-N domain CBS PF00571.23 gi|452207972|ref|YP_007488094.1| - 1.7e-43 146.1 10.0 2.3e-14 52.8 0.1 4.6 5 0 0 5 5 5 4 CBS domain Ribosomal_S30AE PF02482.14 gi|452207972|ref|YP_007488094.1| - 0.00077 19.8 0.2 0.002 18.5 0.1 1.7 1 0 0 1 1 1 1 Sigma 54 modulation protein / S30EA ribosomal protein Ribosomal_L9_C PF03948.9 gi|452207972|ref|YP_007488094.1| - 0.011 15.8 0.2 5.4 7.1 0.0 3.5 3 1 0 3 3 3 0 Ribosomal protein L9, C-terminal domain PRC PF05239.11 gi|452207972|ref|YP_007488094.1| - 0.042 13.6 0.3 7.6 6.4 0.0 2.9 2 0 0 2 2 2 0 PRC-barrel domain DUF1949 PF09186.6 gi|452207972|ref|YP_007488094.1| - 0.39 10.3 4.5 1.4 8.5 0.3 3.4 4 0 0 4 4 4 0 Domain of unknown function (DUF1949) CPSase_L_D2 PF02786.12 gi|452207973|ref|YP_007488095.1| - 3.3e-101 336.9 0.3 1.2e-61 207.7 0.0 2.3 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_chain PF00289.17 gi|452207973|ref|YP_007488095.1| - 7.5e-47 158.0 0.5 7.9e-23 80.6 0.1 2.9 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, N-terminal domain ATP-grasp_4 PF13535.1 gi|452207973|ref|YP_007488095.1| - 1.5e-34 119.3 0.2 7.1e-18 64.9 0.0 2.5 2 0 0 2 2 2 2 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|452207973|ref|YP_007488095.1| - 1.5e-27 96.1 0.0 7.9e-13 47.8 0.0 4.0 3 1 0 3 3 3 3 ATP-grasp in the biosynthetic pathway with Ter operon CPSase_L_D3 PF02787.14 gi|452207973|ref|YP_007488095.1| - 2.6e-22 78.8 0.0 2.9e-21 75.4 0.0 2.5 1 1 0 1 1 1 1 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ATP-grasp PF02222.17 gi|452207973|ref|YP_007488095.1| - 3e-13 49.4 0.0 4e-06 26.3 0.0 2.5 2 0 0 2 2 2 2 ATP-grasp domain Dala_Dala_lig_C PF07478.8 gi|452207973|ref|YP_007488095.1| - 3.1e-11 43.0 0.0 3.2e-08 33.2 0.0 2.6 2 1 0 2 2 2 2 D-ala D-ala ligase C-terminus ATP-grasp_3 PF02655.9 gi|452207973|ref|YP_007488095.1| - 5.1e-09 36.1 0.1 0.00012 21.9 0.0 2.5 2 0 0 2 2 2 2 ATP-grasp domain RimK PF08443.6 gi|452207973|ref|YP_007488095.1| - 3e-06 26.8 0.0 0.00088 18.7 0.0 2.5 2 0 0 2 2 2 2 RimK-like ATP-grasp domain GARS_A PF01071.14 gi|452207973|ref|YP_007488095.1| - 2.8e-05 23.7 0.1 0.0028 17.2 0.0 2.6 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain SBP_bac_3 PF00497.15 gi|452207973|ref|YP_007488095.1| - 0.045 12.9 0.6 0.32 10.2 0.1 2.3 2 0 0 2 2 2 0 Bacterial extracellular solute-binding proteins, family 3 HATPase_c PF02518.21 gi|452207974|ref|YP_007488096.1| - 1.6e-13 50.3 0.0 2.7e-13 49.6 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.1 gi|452207974|ref|YP_007488096.1| - 1e-06 28.5 0.1 2e-06 27.5 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_4 PF08448.5 gi|452207974|ref|YP_007488096.1| - 1.7e-05 24.8 1.2 0.0015 18.5 0.2 3.2 2 1 0 2 2 2 1 PAS fold HATPase_c_5 PF14501.1 gi|452207974|ref|YP_007488096.1| - 8.4e-05 22.2 0.0 0.00013 21.6 0.0 1.3 1 0 0 1 1 1 1 GHKL domain HisKA PF00512.20 gi|452207974|ref|YP_007488096.1| - 0.00015 21.6 0.5 0.00036 20.4 0.1 1.9 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_8 PF13188.1 gi|452207974|ref|YP_007488096.1| - 0.00071 19.3 0.0 0.0023 17.7 0.0 1.8 1 0 0 1 1 1 1 PAS domain PAS PF00989.19 gi|452207974|ref|YP_007488096.1| - 0.0041 16.8 0.0 0.011 15.5 0.0 1.7 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.1 gi|452207974|ref|YP_007488096.1| - 0.0082 16.5 0.0 0.084 13.2 0.0 2.5 1 1 0 1 1 1 1 PAS domain Cupin_2 PF07883.6 gi|452207975|ref|YP_007488097.1| - 5.8e-18 64.1 0.3 7.9e-18 63.7 0.2 1.2 1 0 0 1 1 1 1 Cupin domain Cupin_1 PF00190.17 gi|452207975|ref|YP_007488097.1| - 2.8e-09 36.5 0.0 4e-09 36.0 0.0 1.3 1 0 0 1 1 1 1 Cupin AraC_binding PF02311.14 gi|452207975|ref|YP_007488097.1| - 7.8e-06 25.6 0.0 1e-05 25.2 0.0 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_3 PF05899.7 gi|452207975|ref|YP_007488097.1| - 0.00039 19.7 0.1 0.00074 18.8 0.1 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF861) MannoseP_isomer PF01050.13 gi|452207975|ref|YP_007488097.1| - 0.00046 19.8 0.0 0.00059 19.4 0.0 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase Cupin_6 PF12852.2 gi|452207975|ref|YP_007488097.1| - 0.0011 18.5 0.0 0.0016 18.0 0.0 1.2 1 0 0 1 1 1 1 Cupin ARD PF03079.9 gi|452207975|ref|YP_007488097.1| - 0.014 15.3 0.1 0.022 14.7 0.0 1.3 1 0 0 1 1 1 0 ARD/ARD' family Cupin_7 PF12973.2 gi|452207975|ref|YP_007488097.1| - 0.016 15.0 0.0 0.021 14.6 0.0 1.2 1 0 0 1 1 1 0 ChrR Cupin-like domain CENP-C_C PF11699.3 gi|452207975|ref|YP_007488097.1| - 0.027 14.4 0.0 0.036 14.0 0.0 1.2 1 0 0 1 1 1 0 Mif2/CENP-C like EutQ PF06249.7 gi|452207975|ref|YP_007488097.1| - 0.079 12.5 0.0 0.082 12.4 0.0 1.2 1 0 0 1 1 1 0 Ethanolamine utilisation protein EutQ MoCF_biosynth PF00994.19 gi|452207976|ref|YP_007488098.1| - 2.8e-33 114.3 0.1 4.4e-33 113.7 0.1 1.3 1 0 0 1 1 1 1 Probable molybdopterin binding domain AAA_25 PF13481.1 gi|452207976|ref|YP_007488098.1| - 0.29 10.5 1.8 2.4 7.4 0.0 2.2 2 0 0 2 2 2 0 AAA domain HNH PF01844.18 gi|452207977|ref|YP_007488099.1| - 1.6e-06 27.8 0.5 1.6e-06 27.8 0.3 4.3 5 0 0 5 5 5 2 HNH endonuclease zf-FCS PF06467.9 gi|452207977|ref|YP_007488099.1| - 5.5e-05 22.7 20.5 0.012 15.2 0.4 4.1 4 0 0 4 4 4 3 MYM-type Zinc finger with FCS sequence motif Ecl1 PF12855.2 gi|452207977|ref|YP_007488099.1| - 0.031 13.5 15.6 0.28 10.4 0.6 3.6 2 1 1 3 3 3 0 Life-span regulatory factor zf-C2H2 PF00096.21 gi|452207977|ref|YP_007488099.1| - 0.036 14.4 1.2 0.036 14.4 0.9 5.3 6 0 0 6 6 6 0 Zinc finger, C2H2 type zf-C2H2_4 PF13894.1 gi|452207977|ref|YP_007488099.1| - 0.095 13.0 0.8 0.095 13.0 0.6 5.8 6 1 0 6 6 6 0 C2H2-type zinc finger HNH_2 PF13391.1 gi|452207977|ref|YP_007488099.1| - 0.095 12.4 0.4 0.25 11.1 0.2 1.7 1 0 0 1 1 1 0 HNH endonuclease CitX PF03802.9 gi|452207977|ref|YP_007488099.1| - 0.11 11.9 0.1 0.19 11.1 0.0 1.4 1 0 0 1 1 1 0 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase zf-MYND PF01753.13 gi|452207977|ref|YP_007488099.1| - 0.14 12.0 26.3 0.082 12.8 0.9 4.5 4 2 0 4 4 3 0 MYND finger DZR PF12773.2 gi|452207977|ref|YP_007488099.1| - 0.36 10.6 30.1 5.4 6.9 0.2 5.2 2 2 0 2 2 1 0 Double zinc ribbon C1_1 PF00130.17 gi|452207977|ref|YP_007488099.1| - 3.1 7.6 25.0 0.4 10.4 1.1 5.0 4 2 2 6 6 6 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-HYPF PF07503.7 gi|452207977|ref|YP_007488099.1| - 7.8 6.0 17.2 0.55 9.6 1.6 4.7 4 0 0 4 4 4 0 HypF finger RHH_1 PF01402.16 gi|452207979|ref|YP_007488101.1| - 1.4e-05 24.7 1.0 2.5e-05 23.9 0.1 1.9 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family DUF972 PF06156.8 gi|452207979|ref|YP_007488101.1| - 0.013 15.8 0.4 0.023 15.0 0.3 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF972) DUF3562 PF12085.3 gi|452207979|ref|YP_007488101.1| - 0.022 14.5 1.0 0.056 13.2 0.1 2.0 2 1 0 2 2 2 0 Protein of unknown function (DUF3562) AKNA PF12443.3 gi|452207979|ref|YP_007488101.1| - 0.023 14.6 0.3 0.033 14.1 0.2 1.3 1 0 0 1 1 1 0 AT-hook-containing transcription factor DUF641 PF04859.7 gi|452207979|ref|YP_007488101.1| - 0.028 14.1 0.5 0.042 13.6 0.3 1.3 1 0 0 1 1 1 0 Plant protein of unknown function (DUF641) Spectrin PF00435.16 gi|452207979|ref|YP_007488101.1| - 0.071 13.4 3.3 0.18 12.1 1.1 2.1 2 1 1 3 3 3 0 Spectrin repeat DivIVA PF05103.8 gi|452207979|ref|YP_007488101.1| - 0.1 12.6 2.9 0.21 11.6 2.0 1.4 1 0 0 1 1 1 0 DivIVA protein ANTAR PF03861.9 gi|452207979|ref|YP_007488101.1| - 0.15 11.6 0.7 0.6 9.7 0.0 2.1 2 1 0 2 2 2 0 ANTAR domain FRD2 PF03197.8 gi|452207979|ref|YP_007488101.1| - 0.24 11.9 1.3 2.2 8.8 0.1 2.1 1 1 1 2 2 2 0 Bacteriophage FRD2 protein PRA-CH PF01502.13 gi|452207980|ref|YP_007488102.1| - 7.1e-37 124.8 0.1 9e-37 124.5 0.1 1.1 1 0 0 1 1 1 1 Phosphoribosyl-AMP cyclohydrolase Syntaxin-6_N PF09177.6 gi|452207981|ref|YP_007488103.1| - 0.035 14.4 3.9 23 5.4 0.6 3.5 3 0 0 3 3 3 0 Syntaxin 6, N-terminal DUF1515 PF07439.6 gi|452207981|ref|YP_007488103.1| - 1.3 8.8 5.7 0.27 11.0 0.5 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1515) PGM_PMM_I PF02878.11 gi|452207982|ref|YP_007488104.1| - 4.5e-34 116.9 0.1 1e-33 115.7 0.0 1.6 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.11 gi|452207982|ref|YP_007488104.1| - 1.5e-25 89.5 1.0 3.4e-25 88.3 0.1 2.1 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.15 gi|452207982|ref|YP_007488104.1| - 1e-15 57.4 0.1 4.5e-15 55.4 0.0 2.1 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain PGM_PMM_III PF02880.11 gi|452207982|ref|YP_007488104.1| - 6.1e-13 48.8 0.0 1.1e-12 47.9 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DUF4259 PF14078.1 gi|452207982|ref|YP_007488104.1| - 0.032 14.7 0.2 0.032 14.7 0.2 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4259) RNA_pol_Rpb2_4 PF04566.8 gi|452207982|ref|YP_007488104.1| - 0.045 13.5 0.0 2.5 7.9 0.0 2.5 2 0 0 2 2 2 0 RNA polymerase Rpb2, domain 4 TPR_14 PF13428.1 gi|452207982|ref|YP_007488104.1| - 4.1 8.3 11.6 12 6.8 1.6 4.1 3 0 0 3 3 3 0 Tetratricopeptide repeat IMS PF00817.15 gi|452207985|ref|YP_007488107.1| - 1.9e-34 118.6 0.1 7.1e-34 116.7 0.0 1.9 2 0 0 2 2 2 1 impB/mucB/samB family IMS_C PF11799.3 gi|452207985|ref|YP_007488107.1| - 1.1e-17 64.1 0.0 2.9e-17 62.8 0.0 1.6 2 0 0 2 2 2 1 impB/mucB/samB family C-terminal domain IMS_HHH PF11798.3 gi|452207985|ref|YP_007488107.1| - 9.2e-08 31.7 0.0 2.2e-07 30.5 0.0 1.7 1 0 0 1 1 1 1 IMS family HHH motif DNA_pol_lambd_f PF10391.4 gi|452207985|ref|YP_007488107.1| - 0.0015 18.0 0.0 0.0028 17.1 0.0 1.4 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda DUF1805 PF08827.6 gi|452207985|ref|YP_007488107.1| - 0.0067 16.1 0.7 0.03 14.1 0.1 2.3 2 0 0 2 2 2 1 Domain of unknown function (DUF1805) HHH_5 PF14520.1 gi|452207985|ref|YP_007488107.1| - 0.017 15.3 0.0 0.048 13.8 0.0 1.8 1 0 0 1 1 1 0 Helix-hairpin-helix domain AAA_10 PF12846.2 gi|452207986|ref|YP_007488108.1| - 7.6e-19 68.2 0.3 1.7e-08 34.2 0.0 3.2 2 1 0 3 3 3 2 AAA-like domain DUF87 PF01935.12 gi|452207986|ref|YP_007488108.1| - 1.9e-08 34.4 1.5 2.4e-08 34.1 0.0 1.8 2 0 0 2 2 2 1 Domain of unknown function DUF87 DUF853 PF05872.7 gi|452207986|ref|YP_007488108.1| - 0.00022 19.7 0.1 0.0087 14.4 0.0 2.3 2 0 0 2 2 2 1 Bacterial protein of unknown function (DUF853) Tropomyosin PF00261.15 gi|452207986|ref|YP_007488108.1| - 0.0031 16.6 6.0 0.0052 15.8 4.1 1.3 1 0 0 1 1 1 1 Tropomyosin CbiA PF01656.18 gi|452207986|ref|YP_007488108.1| - 0.0034 16.8 0.0 0.0071 15.7 0.0 1.6 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain APS_kinase PF01583.15 gi|452207986|ref|YP_007488108.1| - 0.0068 16.0 0.5 0.024 14.2 0.0 2.2 3 0 0 3 3 2 1 Adenylylsulphate kinase Spc7 PF08317.6 gi|452207986|ref|YP_007488108.1| - 0.01 14.4 0.8 0.016 13.9 0.6 1.2 1 0 0 1 1 1 0 Spc7 kinetochore protein AAA_17 PF13207.1 gi|452207986|ref|YP_007488108.1| - 0.014 16.2 3.4 0.021 15.6 0.1 2.7 3 0 0 3 3 2 0 AAA domain Uds1 PF15456.1 gi|452207986|ref|YP_007488108.1| - 0.026 14.5 2.5 0.048 13.6 1.7 1.4 1 0 0 1 1 1 0 Up-regulated During Septation AAA PF00004.24 gi|452207986|ref|YP_007488108.1| - 0.029 14.5 0.8 0.7 10.0 0.0 2.9 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Med4 PF10018.4 gi|452207986|ref|YP_007488108.1| - 0.033 13.5 2.8 0.058 12.7 1.2 1.9 2 0 0 2 2 2 0 Vitamin-D-receptor interacting Mediator subunit 4 Zot PF05707.7 gi|452207986|ref|YP_007488108.1| - 0.05 13.0 0.0 0.77 9.1 0.0 2.2 1 1 0 1 1 1 0 Zonular occludens toxin (Zot) DUF241 PF03087.9 gi|452207986|ref|YP_007488108.1| - 0.091 12.2 3.8 0.52 9.7 0.3 2.2 2 0 0 2 2 2 0 Arabidopsis protein of unknown function AAA_18 PF13238.1 gi|452207986|ref|YP_007488108.1| - 0.16 12.2 0.0 0.16 12.2 0.0 2.4 2 1 0 2 2 2 0 AAA domain DUF724 PF05266.9 gi|452207986|ref|YP_007488108.1| - 0.17 11.4 2.9 0.26 10.8 2.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF724) AAA_13 PF13166.1 gi|452207986|ref|YP_007488108.1| - 0.21 9.9 0.1 0.3 9.4 0.1 1.1 1 0 0 1 1 1 0 AAA domain APG6 PF04111.7 gi|452207986|ref|YP_007488108.1| - 0.25 10.3 1.9 0.39 9.7 1.3 1.2 1 0 0 1 1 1 0 Autophagy protein Apg6 DUF641 PF04859.7 gi|452207986|ref|YP_007488108.1| - 0.26 11.0 1.6 0.49 10.1 1.1 1.4 1 0 0 1 1 1 0 Plant protein of unknown function (DUF641) CASP_C PF08172.7 gi|452207986|ref|YP_007488108.1| - 0.33 9.9 5.9 0.64 8.9 4.1 1.4 1 0 0 1 1 1 0 CASP C terminal IncA PF04156.9 gi|452207986|ref|YP_007488108.1| - 0.35 10.4 5.3 0.64 9.5 3.7 1.3 1 0 0 1 1 1 0 IncA protein Macoilin PF09726.4 gi|452207986|ref|YP_007488108.1| - 1.2 7.3 4.0 2 6.6 2.8 1.3 1 0 0 1 1 1 0 Transmembrane protein Med9 PF07544.8 gi|452207986|ref|YP_007488108.1| - 2.5 7.8 6.2 7.8 6.3 4.3 1.8 1 0 0 1 1 1 0 RNA polymerase II transcription mediator complex subunit 9 AAA_16 PF13191.1 gi|452207986|ref|YP_007488108.1| - 2.6 7.9 6.5 1.4 8.8 0.1 3.1 3 1 0 3 3 3 0 AAA ATPase domain AAA_23 PF13476.1 gi|452207986|ref|YP_007488108.1| - 3.6 7.8 6.2 0.29 11.4 0.2 2.0 2 0 0 2 2 2 0 AAA domain TIM PF00121.13 gi|452207987|ref|YP_007488109.1| - 2.7e-22 79.0 0.1 4.7e-20 71.6 0.0 2.1 1 1 0 1 1 1 1 Triosephosphate isomerase ThiG PF05690.9 gi|452207987|ref|YP_007488109.1| - 4.5e-06 25.9 0.8 4.5e-06 25.9 0.6 2.0 1 1 0 2 2 2 1 Thiazole biosynthesis protein ThiG NMO PF03060.10 gi|452207987|ref|YP_007488109.1| - 0.00014 21.1 0.8 0.00014 21.1 0.5 1.6 1 1 0 2 2 2 1 Nitronate monooxygenase IGPS PF00218.16 gi|452207987|ref|YP_007488109.1| - 0.0011 18.0 0.0 0.0098 14.9 0.0 2.0 1 1 1 2 2 2 1 Indole-3-glycerol phosphate synthase Hydrolase_like PF13242.1 gi|452207987|ref|YP_007488109.1| - 0.0055 16.3 3.3 0.31 10.7 0.1 3.4 2 1 1 3 3 3 1 HAD-hyrolase-like FMN_dh PF01070.13 gi|452207987|ref|YP_007488109.1| - 0.014 14.2 1.3 0.014 14.2 0.9 2.0 2 1 0 2 2 2 0 FMN-dependent dehydrogenase His_biosynth PF00977.16 gi|452207987|ref|YP_007488109.1| - 0.072 12.3 0.4 0.17 11.0 0.1 1.7 2 0 0 2 2 2 0 Histidine biosynthesis protein Tetraspannin PF00335.15 gi|452207988|ref|YP_007488110.1| - 0.54 9.4 4.2 0.66 9.2 2.9 1.0 1 0 0 1 1 1 0 Tetraspanin family PQQ_3 PF13570.1 gi|452207989|ref|YP_007488111.1| - 9.8e-77 251.3 51.2 1.3e-12 47.5 0.9 8.3 8 0 0 8 8 8 8 PQQ-like domain PQQ_2 PF13360.1 gi|452207989|ref|YP_007488111.1| - 3.9e-58 196.7 24.8 2.1e-22 79.7 2.5 4.1 1 1 3 4 4 4 4 PQQ-like domain PQQ PF01011.16 gi|452207989|ref|YP_007488111.1| - 3.7e-41 136.6 25.0 8.2e-07 28.2 0.0 10.0 9 1 0 9 9 9 7 PQQ enzyme repeat E1-E2_ATPase PF00122.15 gi|452207990|ref|YP_007488112.1| - 2.5e-42 144.4 0.1 5.3e-42 143.4 0.1 1.5 1 0 0 1 1 1 1 E1-E2 ATPase Hydrolase PF00702.21 gi|452207990|ref|YP_007488112.1| - 1.1e-34 120.7 6.6 1.7e-34 120.1 4.6 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|452207990|ref|YP_007488112.1| - 1.4e-11 44.9 0.0 3.3e-11 43.6 0.0 1.7 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.21 gi|452207990|ref|YP_007488112.1| - 4.5e-07 29.9 0.0 4e-06 26.8 0.0 2.5 2 0 0 2 2 2 1 Heavy-metal-associated domain Hydrolase_3 PF08282.7 gi|452207990|ref|YP_007488112.1| - 0.00024 20.7 0.2 0.00035 20.2 0.2 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase ATPase-cat_bd PF12156.3 gi|452207990|ref|YP_007488112.1| - 0.00073 20.0 0.1 0.0014 19.1 0.1 1.4 1 0 0 1 1 1 1 Putative metal-binding domain of cation transport ATPase Peripla_BP_3 PF13377.1 gi|452207990|ref|YP_007488112.1| - 0.45 10.5 4.3 0.63 10.0 0.2 2.9 3 0 0 3 3 3 0 Periplasmic binding protein-like domain DUF1628 PF07790.6 gi|452207991|ref|YP_007488113.1| - 4.7e-26 91.3 0.6 4.7e-26 91.3 0.4 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF1628) Big_3 PF07523.7 gi|452207991|ref|YP_007488113.1| - 0.096 12.7 3.5 0.42 10.7 0.5 2.2 1 1 1 2 2 2 0 Bacterial Ig-like domain (group 3) Fer2 PF00111.22 gi|452207992|ref|YP_007488114.1| - 3.6e-08 33.0 0.9 8.3e-08 31.8 0.6 1.6 1 1 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_4 PF13510.1 gi|452207992|ref|YP_007488114.1| - 0.073 12.8 2.1 0.26 11.1 1.5 1.8 1 1 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain Fer2_3 PF13085.1 gi|452207992|ref|YP_007488114.1| - 0.24 11.2 1.1 0.34 10.7 0.7 1.5 1 1 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain Usp PF00582.21 gi|452207993|ref|YP_007488115.1| - 4.6e-15 56.0 1.9 5.2e-15 55.8 1.4 1.1 1 0 0 1 1 1 1 Universal stress protein family IF3_N PF05198.11 gi|452207993|ref|YP_007488115.1| - 0.0099 15.7 0.2 1 9.3 0.0 2.2 1 1 1 2 2 2 2 Translation initiation factor IF-3, N-terminal domain DUF2007 PF09413.5 gi|452207993|ref|YP_007488115.1| - 0.018 14.8 0.0 0.035 13.9 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF2007) DUF2984 PF11203.3 gi|452207993|ref|YP_007488115.1| - 0.12 12.4 0.4 0.18 11.9 0.3 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2984) NAD_binding_3 PF03447.11 gi|452207993|ref|YP_007488115.1| - 0.15 12.4 0.6 0.46 10.9 0.3 1.8 1 1 1 2 2 2 0 Homoserine dehydrogenase, NAD binding domain Zn-ribbon_8 PF09723.5 gi|452207994|ref|YP_007488116.1| - 0.0046 16.8 2.9 0.5 10.3 0.1 2.2 2 0 0 2 2 2 2 Zinc ribbon domain A2L_zn_ribbon PF08792.5 gi|452207994|ref|YP_007488116.1| - 0.009 15.4 1.1 2.2 7.8 0.0 2.2 2 0 0 2 2 2 2 A2L zinc ribbon domain zf-ribbon_3 PF13248.1 gi|452207994|ref|YP_007488116.1| - 0.016 14.3 0.6 0.45 9.7 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-Mss51 PF13824.1 gi|452207994|ref|YP_007488116.1| - 0.021 14.6 0.5 3.1 7.7 0.1 2.1 2 0 0 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-IS66 PF13005.2 gi|452207994|ref|YP_007488116.1| - 0.029 14.3 1.0 0.58 10.1 0.1 2.2 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 UPF0547 PF10571.4 gi|452207994|ref|YP_007488116.1| - 0.08 12.6 2.8 0.78 9.4 1.9 2.1 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 DZR PF12773.2 gi|452207994|ref|YP_007488116.1| - 0.083 12.7 0.6 0.17 11.7 0.4 1.5 1 1 0 1 1 1 0 Double zinc ribbon Zn_Tnp_IS1595 PF12760.2 gi|452207994|ref|YP_007488116.1| - 0.13 12.0 1.2 0.28 11.0 0.8 1.6 1 1 0 1 1 1 0 Transposase zinc-ribbon domain Rubredoxin PF00301.15 gi|452207994|ref|YP_007488116.1| - 0.29 11.0 2.4 9.8 6.1 0.2 2.3 2 0 0 2 2 2 0 Rubredoxin zf-C4_Topoisom PF01396.14 gi|452207994|ref|YP_007488116.1| - 0.36 10.3 0.2 0.36 10.3 0.1 2.0 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger TF_Zn_Ribbon PF08271.7 gi|452207994|ref|YP_007488116.1| - 1.7 8.0 4.8 11 5.4 3.1 2.2 1 1 0 1 1 1 0 TFIIB zinc-binding zf-TFIIB PF13453.1 gi|452207994|ref|YP_007488116.1| - 2.4 7.4 5.4 11 5.2 3.3 2.2 2 1 0 2 2 2 0 Transcription factor zinc-finger zf-C2H2 PF00096.21 gi|452207994|ref|YP_007488116.1| - 3.2 8.2 4.4 6 7.4 0.4 2.1 2 0 0 2 2 2 0 Zinc finger, C2H2 type DUF1610 PF07754.6 gi|452207994|ref|YP_007488116.1| - 4.8 7.3 7.5 9.7 6.4 0.4 2.8 3 0 0 3 3 3 0 Domain of unknown function (DUF1610) IMPDH PF00478.20 gi|452207997|ref|YP_007488119.1| - 5.3e-127 423.5 5.9 6e-127 423.3 4.1 1.0 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain CBS PF00571.23 gi|452207997|ref|YP_007488119.1| - 1.9e-25 88.3 8.9 1.6e-12 47.0 0.5 2.9 3 0 0 3 3 2 2 CBS domain NMO PF03060.10 gi|452207997|ref|YP_007488119.1| - 1.8e-11 43.7 8.1 5e-06 25.8 1.9 2.5 2 1 0 2 2 2 2 Nitronate monooxygenase FMN_dh PF01070.13 gi|452207997|ref|YP_007488119.1| - 6.9e-10 38.3 3.7 1.2e-09 37.5 2.1 1.6 1 1 0 1 1 1 1 FMN-dependent dehydrogenase ThiG PF05690.9 gi|452207997|ref|YP_007488119.1| - 0.00011 21.3 1.3 0.00011 21.3 0.9 2.7 3 0 0 3 3 3 1 Thiazole biosynthesis protein ThiG DHO_dh PF01180.16 gi|452207997|ref|YP_007488119.1| - 0.00016 20.7 1.2 0.00034 19.6 0.8 1.5 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase Glu_synthase PF01645.12 gi|452207997|ref|YP_007488119.1| - 0.0002 20.4 4.4 0.00036 19.5 3.0 1.3 1 0 0 1 1 1 1 Conserved region in glutamate synthase Dus PF01207.12 gi|452207997|ref|YP_007488119.1| - 0.0017 17.2 0.1 0.0036 16.1 0.1 1.5 1 0 0 1 1 1 1 Dihydrouridine synthase (Dus) His_biosynth PF00977.16 gi|452207997|ref|YP_007488119.1| - 0.0068 15.7 1.3 0.0068 15.7 0.9 2.5 3 1 0 3 3 3 1 Histidine biosynthesis protein PcrB PF01884.12 gi|452207997|ref|YP_007488119.1| - 0.014 14.6 0.7 0.014 14.6 0.5 2.8 4 0 0 4 4 4 0 PcrB family HET-s_218-289 PF11558.3 gi|452207997|ref|YP_007488119.1| - 0.038 13.9 0.3 0.1 12.5 0.2 1.7 1 0 0 1 1 1 0 Het-s 218-289 Trypsin_2 PF13365.1 gi|452207997|ref|YP_007488119.1| - 0.051 13.5 0.1 0.27 11.2 0.0 2.1 2 0 0 2 2 2 0 Trypsin-like peptidase domain CMD PF02627.15 gi|452207999|ref|YP_007488121.1| - 2e-10 40.3 0.1 2.4e-09 36.9 0.0 2.3 1 1 1 2 2 2 1 Carboxymuconolactone decarboxylase family peroxidase PF00141.18 gi|452208001|ref|YP_007488123.1| - 4.5e-90 301.1 0.0 2.2e-50 171.2 0.0 2.2 2 0 0 2 2 2 2 Peroxidase GHMP_kinases_N PF00288.21 gi|452208002|ref|YP_007488124.1| - 2.5e-14 53.0 3.3 2.5e-14 53.0 2.3 2.0 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|452208002|ref|YP_007488124.1| - 3.1e-06 27.2 0.1 7.5e-06 26.0 0.1 1.6 1 0 0 1 1 1 1 GHMP kinases C terminal CoA_binding PF02629.14 gi|452208003|ref|YP_007488125.1| - 8.3e-22 77.5 0.7 8.3e-22 77.5 0.5 2.2 3 0 0 3 3 3 1 CoA binding domain Ligase_CoA PF00549.14 gi|452208003|ref|YP_007488125.1| - 7.1e-14 51.6 0.8 1.4e-13 50.6 0.5 1.4 1 0 0 1 1 1 1 CoA-ligase Succ_CoA_lig PF13607.1 gi|452208003|ref|YP_007488125.1| - 1.8e-11 43.7 0.0 3e-11 43.0 0.0 1.4 1 0 0 1 1 1 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.1 gi|452208003|ref|YP_007488125.1| - 1.1e-07 31.9 0.0 6e-06 26.4 0.0 2.2 2 0 0 2 2 2 1 CoA binding domain ATP-grasp_2 PF08442.5 gi|452208004|ref|YP_007488126.1| - 5e-64 215.4 0.4 7.6e-64 214.8 0.3 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_5 PF13549.1 gi|452208004|ref|YP_007488126.1| - 6.5e-23 81.1 5.6 7.9e-23 80.8 2.4 2.0 2 0 0 2 2 2 1 ATP-grasp domain Ligase_CoA PF00549.14 gi|452208004|ref|YP_007488126.1| - 1.7e-12 47.2 1.0 4.1e-12 45.9 0.7 1.6 1 0 0 1 1 1 1 CoA-ligase CPSase_L_D2 PF02786.12 gi|452208004|ref|YP_007488126.1| - 1.1e-10 41.2 1.4 1.1e-09 37.9 0.2 2.4 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp_4 PF13535.1 gi|452208004|ref|YP_007488126.1| - 3.3e-09 36.7 0.2 8e-09 35.4 0.1 1.7 1 1 0 1 1 1 1 ATP-grasp domain ATP-grasp PF02222.17 gi|452208004|ref|YP_007488126.1| - 2e-06 27.2 0.0 3.7e-06 26.3 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain GARS_A PF01071.14 gi|452208004|ref|YP_007488126.1| - 0.0045 16.5 1.9 0.0069 15.9 0.1 1.9 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain Carboxyl_trans PF01039.17 gi|452208005|ref|YP_007488127.1| - 7.5e-201 667.7 0.0 8.4e-201 667.5 0.0 1.0 1 0 0 1 1 1 1 Carboxyl transferase domain MdcE PF06833.6 gi|452208005|ref|YP_007488127.1| - 0.00074 18.7 0.0 0.0066 15.6 0.0 2.1 2 0 0 2 2 2 1 Malonate decarboxylase gamma subunit (MdcE) ACC_epsilon PF13822.1 gi|452208006|ref|YP_007488128.1| - 0.015 15.6 10.7 0.015 15.6 7.4 1.9 1 1 1 2 2 2 0 Acyl-CoA carboxylase epsilon subunit MIase PF02426.11 gi|452208006|ref|YP_007488128.1| - 0.086 12.6 0.0 0.1 12.4 0.0 1.3 1 0 0 1 1 1 0 Muconolactone delta-isomerase CPSase_L_D2 PF02786.12 gi|452208007|ref|YP_007488129.1| - 3e-68 229.2 0.0 5.5e-68 228.3 0.0 1.5 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_chain PF00289.17 gi|452208007|ref|YP_007488129.1| - 5.2e-42 142.4 0.1 2e-41 140.5 0.1 2.0 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, N-terminal domain Biotin_carb_C PF02785.14 gi|452208007|ref|YP_007488129.1| - 3.4e-32 110.6 0.0 7.9e-32 109.4 0.0 1.7 1 0 0 1 1 1 1 Biotin carboxylase C-terminal domain Biotin_lipoyl PF00364.17 gi|452208007|ref|YP_007488129.1| - 2.6e-19 68.6 4.3 9.9e-19 66.7 3.0 2.1 1 0 0 1 1 1 1 Biotin-requiring enzyme ATP-grasp_4 PF13535.1 gi|452208007|ref|YP_007488129.1| - 8.1e-13 48.5 0.1 8.1e-13 48.5 0.1 2.2 3 0 0 3 3 3 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|452208007|ref|YP_007488129.1| - 4.5e-12 45.3 0.0 1e-08 34.3 0.0 2.1 2 0 0 2 2 2 2 ATP-grasp in the biosynthetic pathway with Ter operon Biotin_lipoyl_2 PF13533.1 gi|452208007|ref|YP_007488129.1| - 5.3e-11 42.0 1.8 0.00029 20.4 0.2 2.9 2 1 1 3 3 3 2 Biotin-lipoyl like HlyD PF00529.15 gi|452208007|ref|YP_007488129.1| - 6.4e-07 28.9 1.5 0.0014 18.0 0.1 2.3 1 1 1 2 2 2 2 HlyD family secretion protein Dala_Dala_lig_C PF07478.8 gi|452208007|ref|YP_007488129.1| - 6.2e-05 22.4 0.0 0.00014 21.3 0.0 1.6 2 0 0 2 2 1 1 D-ala D-ala ligase C-terminus ATP-grasp PF02222.17 gi|452208007|ref|YP_007488129.1| - 7.4e-05 22.1 0.0 0.00015 21.1 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain HlyD_2 PF12700.2 gi|452208007|ref|YP_007488129.1| - 7.6e-05 22.0 0.4 0.052 12.7 0.0 2.2 1 1 1 2 2 2 2 HlyD family secretion protein GARS_A PF01071.14 gi|452208007|ref|YP_007488129.1| - 0.0007 19.2 0.0 0.0013 18.3 0.0 1.5 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain HlyD_3 PF13437.1 gi|452208007|ref|YP_007488129.1| - 0.0023 18.2 0.6 1.1 9.6 0.0 2.6 2 0 0 2 2 2 1 HlyD family secretion protein GCV_H PF01597.14 gi|452208007|ref|YP_007488129.1| - 0.0061 16.2 0.8 0.014 15.0 0.6 1.6 1 0 0 1 1 1 1 Glycine cleavage H-protein RimK PF08443.6 gi|452208007|ref|YP_007488129.1| - 0.039 13.4 0.0 1.5 8.2 0.0 2.3 2 0 0 2 2 2 0 RimK-like ATP-grasp domain RnfC_N PF13375.1 gi|452208007|ref|YP_007488129.1| - 0.11 12.2 0.4 0.37 10.5 0.3 1.9 1 0 0 1 1 1 0 RnfC Barrel sandwich hybrid domain PTS_EIIA_1 PF00358.15 gi|452208007|ref|YP_007488129.1| - 0.38 10.3 5.2 3.4 7.2 0.2 3.5 3 1 1 4 4 4 0 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 IMP_cyclohyd PF07826.6 gi|452208008|ref|YP_007488130.1| - 2.4e-57 193.4 0.0 2.9e-57 193.2 0.0 1.0 1 0 0 1 1 1 1 IMP cyclohydrolase-like protein HNH PF01844.18 gi|452208009|ref|YP_007488131.1| - 2.5e-05 24.0 19.6 0.02 14.7 3.1 3.4 2 2 0 2 2 2 2 HNH endonuclease PhnA_Zn_Ribbon PF08274.7 gi|452208009|ref|YP_007488131.1| - 0.049 13.4 6.6 0.41 10.4 0.1 2.6 3 0 0 3 3 3 0 PhnA Zinc-Ribbon Cytochrom_C PF00034.16 gi|452208009|ref|YP_007488131.1| - 0.95 10.3 9.2 4.2 8.2 0.4 3.2 3 0 0 3 3 3 0 Cytochrome c DUF968 PF06147.6 gi|452208009|ref|YP_007488131.1| - 1.1 9.0 10.2 0.054 13.3 2.3 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF968) Snurportin1 PF11538.3 gi|452208009|ref|YP_007488131.1| - 9.9 6.0 8.9 0.55 10.0 1.8 2.2 2 0 0 2 2 2 0 Snurportin1 DUF35 PF01796.12 gi|452208010|ref|YP_007488132.1| - 2.3e-13 50.1 1.9 3.2e-13 49.7 1.3 1.2 1 0 0 1 1 1 1 DUF35 OB-fold domain Thiolase_N PF00108.18 gi|452208011|ref|YP_007488133.1| - 1.1e-11 44.2 1.6 1.9e-10 40.2 0.1 2.4 2 0 0 2 2 2 1 Thiolase, N-terminal domain ketoacyl-synt PF00109.21 gi|452208011|ref|YP_007488133.1| - 3.4e-10 39.8 6.8 3.5e-07 29.9 1.6 3.4 2 1 1 3 3 3 2 Beta-ketoacyl synthase, N-terminal domain Thiolase_C PF02803.13 gi|452208011|ref|YP_007488133.1| - 2.1e-09 36.8 0.2 6.4e-09 35.2 0.1 1.8 1 0 0 1 1 1 1 Thiolase, C-terminal domain Ketoacyl-synt_C PF02801.17 gi|452208011|ref|YP_007488133.1| - 8.7e-05 22.3 3.1 0.0052 16.6 0.1 3.3 3 0 0 3 3 3 2 Beta-ketoacyl synthase, C-terminal domain E1-E2_ATPase PF00122.15 gi|452208012|ref|YP_007488134.1| - 9.2e-57 191.7 0.1 2.2e-56 190.4 0.0 1.7 2 0 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.21 gi|452208012|ref|YP_007488134.1| - 2e-46 159.0 10.7 3.5e-46 158.3 7.4 1.4 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|452208012|ref|YP_007488134.1| - 7.2e-16 58.9 0.2 1.7e-15 57.6 0.1 1.7 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.21 gi|452208012|ref|YP_007488134.1| - 1.1e-08 35.0 0.2 5.6e-08 32.8 0.0 2.2 2 1 0 2 2 2 1 Heavy-metal-associated domain Hydrolase_3 PF08282.7 gi|452208012|ref|YP_007488134.1| - 0.0027 17.3 1.5 0.0067 16.0 0.6 1.8 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Pyridox_ox_2 PF12900.2 gi|452208013|ref|YP_007488135.1| - 1.4e-16 60.6 0.0 3e-16 59.5 0.0 1.6 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_oxidase PF01243.15 gi|452208013|ref|YP_007488135.1| - 0.0008 19.3 0.0 0.0053 16.7 0.0 2.3 3 0 0 3 3 3 1 Pyridoxamine 5'-phosphate oxidase RNase_HII PF01351.13 gi|452208016|ref|YP_007488138.1| - 4.1e-30 104.9 0.0 4.7e-30 104.7 0.0 1.0 1 0 0 1 1 1 1 Ribonuclease HII Radical_SAM PF04055.16 gi|452208017|ref|YP_007488139.1| - 6.2e-13 49.2 0.1 1.4e-12 48.0 0.1 1.6 1 0 0 1 1 1 1 Radical SAM superfamily DUF790 PF05626.6 gi|452208018|ref|YP_007488140.1| - 4.6e-87 292.0 0.0 5.3e-87 291.8 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF790) HhH-GPD PF00730.20 gi|452208019|ref|YP_007488141.1| - 3.4e-20 72.3 0.0 5e-20 71.8 0.0 1.3 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein EndIII_4Fe-2S PF10576.4 gi|452208019|ref|YP_007488141.1| - 0.00054 20.0 6.5 0.0012 18.9 4.5 1.6 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III HHH PF00633.18 gi|452208019|ref|YP_007488141.1| - 0.012 15.3 0.0 0.036 13.7 0.0 1.9 1 0 0 1 1 1 0 Helix-hairpin-helix motif DUF2400 PF09674.5 gi|452208019|ref|YP_007488141.1| - 0.036 13.7 0.0 0.058 13.0 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2400) DUF371 PF04027.8 gi|452208020|ref|YP_007488142.1| - 1.2e-51 173.7 0.5 1.4e-51 173.6 0.4 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF371) Laminin_II PF06009.7 gi|452208021|ref|YP_007488143.1| - 1.6 8.4 30.9 0.27 10.9 4.8 3.9 1 1 2 4 4 4 0 Laminin Domain II YqzH PF14164.1 gi|452208021|ref|YP_007488143.1| - 2.3 8.1 7.5 0.58 10.1 0.7 2.9 2 0 0 2 2 2 0 YqzH-like protein AATF-Che1 PF13339.1 gi|452208021|ref|YP_007488143.1| - 4.2 7.5 37.2 0.72 10.0 5.5 3.5 1 1 2 3 3 3 0 Apoptosis antagonizing transcription factor DUF948 PF06103.6 gi|452208021|ref|YP_007488143.1| - 7.7 6.4 14.9 1.6 8.6 0.6 3.5 1 1 2 3 3 3 0 Bacterial protein of unknown function (DUF948) AstE_AspA PF04952.9 gi|452208022|ref|YP_007488144.1| - 1.6e-16 60.0 0.0 3e-16 59.1 0.0 1.3 1 1 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family Peptidase_M14 PF00246.19 gi|452208022|ref|YP_007488144.1| - 0.021 14.4 0.0 0.1 12.1 0.0 1.8 1 1 1 2 2 2 0 Zinc carboxypeptidase UPF0179 PF03684.8 gi|452208023|ref|YP_007488145.1| - 1.4e-50 170.5 0.0 1.6e-50 170.4 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0179) DDE_Tnp_1_6 PF13751.1 gi|452208023|ref|YP_007488145.1| - 0.0041 17.1 0.1 0.0081 16.1 0.0 1.5 2 0 0 2 2 2 1 Transposase DDE domain AMP-binding PF00501.23 gi|452208024|ref|YP_007488146.1| - 1.2e-91 307.1 0.7 1.4e-91 306.9 0.5 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|452208024|ref|YP_007488146.1| - 8.4e-16 58.6 0.3 3.6e-15 56.6 0.0 2.3 2 1 0 2 2 2 1 AMP-binding enzyme C-terminal domain DUF4405 PF14358.1 gi|452208025|ref|YP_007488147.1| - 5.5e-13 48.8 8.9 7.2e-13 48.4 6.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4405) Ni_hydr_CYTB PF01292.15 gi|452208025|ref|YP_007488147.1| - 0.12 11.7 5.2 0.15 11.4 3.6 1.2 1 0 0 1 1 1 0 Prokaryotic cytochrome b561 DUF2304 PF10066.4 gi|452208025|ref|YP_007488147.1| - 0.18 11.6 1.4 0.22 11.3 1.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2304) ECH PF00378.15 gi|452208026|ref|YP_007488148.1| - 3e-61 206.6 0.0 3.3e-61 206.5 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family SDH_sah PF01972.11 gi|452208026|ref|YP_007488148.1| - 0.012 14.3 0.0 0.018 13.8 0.0 1.2 1 0 0 1 1 1 0 Serine dehydrogenase proteinase LysE PF01810.13 gi|452208027|ref|YP_007488149.1| - 2.8e-32 111.5 11.0 1.8e-31 108.9 7.6 1.8 1 1 0 1 1 1 1 LysE type translocator DUF2427 PF10348.4 gi|452208027|ref|YP_007488149.1| - 0.16 11.5 1.3 0.26 10.8 0.2 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF2427) HD PF01966.17 gi|452208028|ref|YP_007488150.1| - 6.1e-17 61.7 2.0 7.1e-17 61.5 0.6 1.6 2 0 0 2 2 2 1 HD domain HD_4 PF13328.1 gi|452208028|ref|YP_007488150.1| - 0.002 17.8 0.1 0.0034 17.1 0.1 1.3 1 0 0 1 1 1 1 HD domain HDOD PF08668.7 gi|452208028|ref|YP_007488150.1| - 0.028 13.7 0.0 0.046 12.9 0.0 1.4 1 0 0 1 1 1 0 HDOD domain TraI_2 PF07514.6 gi|452208028|ref|YP_007488150.1| - 0.077 11.7 0.6 0.14 10.9 0.2 1.5 1 1 0 1 1 1 0 Putative helicase DUF457 PF04307.9 gi|452208029|ref|YP_007488151.1| - 2.3e-07 30.2 16.0 4.7e-07 29.2 9.6 2.1 1 1 1 2 2 2 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) Tox-WTIP PF15654.1 gi|452208029|ref|YP_007488151.1| - 0.81 9.3 5.1 0.14 11.7 0.7 1.9 2 0 0 2 2 2 0 Toxin with a conserved tryptophan and TIP tripeptide motif B12D PF06522.6 gi|452208029|ref|YP_007488151.1| - 3 7.5 4.4 1.5 8.5 0.4 2.5 2 0 0 2 2 2 0 NADH-ubiquinone reductase complex 1 MLRQ subunit DUF454 PF04304.8 gi|452208029|ref|YP_007488151.1| - 9.4 6.3 7.1 1.4 9.0 0.1 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF454) Acetyltransf_1 PF00583.19 gi|452208030|ref|YP_007488152.1| - 8.5e-09 35.3 0.7 2.9e-08 33.6 0.2 1.9 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|452208030|ref|YP_007488152.1| - 5.8e-07 29.6 0.1 8.1e-07 29.1 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|452208030|ref|YP_007488152.1| - 1.7e-05 24.8 0.0 2.6e-05 24.2 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|452208030|ref|YP_007488152.1| - 0.001 19.1 0.0 0.002 18.2 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Zn-ribbon_8 PF09723.5 gi|452208030|ref|YP_007488152.1| - 0.026 14.4 1.4 0.047 13.6 1.0 1.3 1 0 0 1 1 1 0 Zinc ribbon domain DNA_RNApol_7kD PF03604.8 gi|452208030|ref|YP_007488152.1| - 0.19 11.2 1.4 0.32 10.4 0.9 1.4 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit TF_Zn_Ribbon PF08271.7 gi|452208030|ref|YP_007488152.1| - 0.56 9.5 5.2 6.2 6.2 0.5 2.6 1 1 1 2 2 2 0 TFIIB zinc-binding SRP19 PF01922.12 gi|452208031|ref|YP_007488153.1| - 0.1 13.2 0.0 0.13 12.8 0.0 1.3 1 0 0 1 1 1 0 SRP19 protein Dodecin PF07311.7 gi|452208032|ref|YP_007488154.1| - 1.2e-21 76.5 0.0 1.3e-21 76.3 0.0 1.0 1 0 0 1 1 1 1 Dodecin UPF0118 PF01594.11 gi|452208033|ref|YP_007488155.1| - 5.4e-32 111.0 26.1 6.9e-32 110.7 18.1 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF20 Chs3p PF12271.3 gi|452208033|ref|YP_007488155.1| - 0.43 9.5 16.5 0.23 10.3 3.1 3.0 3 0 0 3 3 3 0 Chitin synthase III catalytic subunit Zn_Tnp_IS1595 PF12760.2 gi|452208034|ref|YP_007488156.1| - 0.00027 20.6 1.3 0.00033 20.3 0.9 1.1 1 0 0 1 1 1 1 Transposase zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|452208034|ref|YP_007488156.1| - 0.00055 19.8 0.3 0.089 12.7 0.0 2.1 2 0 0 2 2 2 2 Zinc ribbon domain zf-H2C2_2 PF13465.1 gi|452208034|ref|YP_007488156.1| - 0.013 15.8 4.7 0.026 14.8 0.2 2.1 2 0 0 2 2 2 0 Zinc-finger double domain zf-RING_3 PF14369.1 gi|452208034|ref|YP_007488156.1| - 0.013 15.5 0.2 2.5 8.1 0.0 2.1 2 0 0 2 2 2 0 zinc-finger DUF2082 PF09855.4 gi|452208034|ref|YP_007488156.1| - 0.018 14.8 0.7 0.19 11.5 0.0 2.0 2 0 0 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) Rubredoxin PF00301.15 gi|452208034|ref|YP_007488156.1| - 0.043 13.6 0.3 3.4 7.6 0.0 2.2 2 0 0 2 2 2 0 Rubredoxin zf-ISL3 PF14690.1 gi|452208034|ref|YP_007488156.1| - 0.05 13.6 2.7 0.52 10.3 0.2 2.2 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Zn_Tnp_IS1 PF03811.8 gi|452208034|ref|YP_007488156.1| - 0.056 12.9 2.6 0.23 11.0 1.8 1.9 1 1 0 1 1 1 0 InsA N-terminal domain zf-DNA_Pol PF08996.5 gi|452208034|ref|YP_007488156.1| - 0.083 12.2 0.1 0.095 12.0 0.1 1.0 1 0 0 1 1 1 0 DNA Polymerase alpha zinc finger zf-C2H2 PF00096.21 gi|452208034|ref|YP_007488156.1| - 0.41 11.0 2.9 19 5.8 0.1 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type A2L_zn_ribbon PF08792.5 gi|452208034|ref|YP_007488156.1| - 0.99 8.9 6.2 6.2 6.4 0.9 2.1 2 0 0 2 2 2 0 A2L zinc ribbon domain MreB_Mbl PF06723.8 gi|452208035|ref|YP_007488157.1| - 1.9e-05 23.4 0.0 0.11 11.0 0.0 2.4 2 1 0 2 2 2 2 MreB/Mbl protein Actin PF00022.14 gi|452208035|ref|YP_007488157.1| - 0.013 13.9 0.0 0.17 10.2 0.0 2.1 2 0 0 2 2 2 0 Actin SHOCT PF09851.4 gi|452208036|ref|YP_007488158.1| - 0.08 12.4 0.6 0.08 12.4 0.4 2.2 3 0 0 3 3 3 0 Short C-terminal domain Trypan_PARP PF05887.6 gi|452208037|ref|YP_007488159.1| - 0.06 13.1 1.7 0.066 13.0 1.2 1.1 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) SSP160 PF06933.6 gi|452208038|ref|YP_007488160.1| - 0.15 10.0 3.0 0.17 9.8 2.1 1.0 1 0 0 1 1 1 0 Special lobe-specific silk protein SSP160 zf-FPG_IleRS PF06827.9 gi|452208039|ref|YP_007488161.1| - 0.003 17.1 0.9 0.0048 16.5 0.6 1.4 1 0 0 1 1 1 1 Zinc finger found in FPG and IleRS Zn_Tnp_IS1595 PF12760.2 gi|452208039|ref|YP_007488161.1| - 0.011 15.4 1.3 0.019 14.7 0.9 1.3 1 0 0 1 1 1 0 Transposase zinc-ribbon domain zf-TFIIB PF13453.1 gi|452208039|ref|YP_007488161.1| - 0.049 12.8 1.5 0.082 12.1 1.0 1.4 1 0 0 1 1 1 0 Transcription factor zinc-finger DZR PF12773.2 gi|452208039|ref|YP_007488161.1| - 0.086 12.6 0.4 0.15 11.9 0.3 1.4 1 0 0 1 1 1 0 Double zinc ribbon DUF3827 PF12877.2 gi|452208039|ref|YP_007488161.1| - 0.13 10.3 0.5 0.13 10.3 0.3 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF3827) zf-RING_4 PF14570.1 gi|452208040|ref|YP_007488162.1| - 0.19 11.3 2.6 0.72 9.4 0.1 2.5 2 0 0 2 2 2 0 RING/Ubox like zinc-binding domain zf-CCHC_5 PF14787.1 gi|452208040|ref|YP_007488162.1| - 0.23 10.9 1.9 3.6 7.1 0.1 2.6 2 0 0 2 2 2 0 GAG-polyprotein viral zinc-finger zf-RING_3 PF14369.1 gi|452208040|ref|YP_007488162.1| - 0.28 11.2 4.4 0.46 10.5 0.0 3.0 3 0 0 3 3 3 0 zinc-finger HypA PF01155.14 gi|452208040|ref|YP_007488162.1| - 0.29 10.8 4.3 0.53 9.9 0.3 2.1 2 0 0 2 2 2 0 Hydrogenase expression/synthesis hypA family zf-NADH-PPase PF09297.6 gi|452208040|ref|YP_007488162.1| - 0.66 9.5 8.1 1.8 8.1 0.0 3.3 3 0 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain zf-TFIIB PF13453.1 gi|452208040|ref|YP_007488162.1| - 0.85 8.8 7.5 0.41 9.8 0.2 3.2 3 0 0 3 3 3 0 Transcription factor zinc-finger Zn-ribbon_8 PF09723.5 gi|452208040|ref|YP_007488162.1| - 4.1 7.4 6.1 23 5.0 1.2 2.7 2 1 0 2 2 2 0 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|452208040|ref|YP_007488162.1| - 4.9 7.0 8.2 2.1 8.2 0.1 2.8 2 1 0 2 2 2 0 Transposase zinc-ribbon domain ZZ PF00569.12 gi|452208040|ref|YP_007488162.1| - 6 6.4 7.1 1 8.9 0.1 2.8 3 1 0 3 3 3 0 Zinc finger, ZZ type Cation_efflux PF01545.16 gi|452208041|ref|YP_007488163.1| - 0.17 10.9 2.8 0.21 10.6 2.0 1.0 1 0 0 1 1 1 0 Cation efflux family zinc_ribbon_5 PF13719.1 gi|452208042|ref|YP_007488164.1| - 0.14 11.7 0.9 4.4 6.9 0.0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|452208042|ref|YP_007488164.1| - 0.14 11.8 0.8 5 6.9 0.0 2.4 2 0 0 2 2 2 0 zinc-ribbon domain zf-LSD1 PF06943.7 gi|452208042|ref|YP_007488164.1| - 3.4 7.3 6.2 0.59 9.7 0.4 2.3 2 0 0 2 2 2 0 LSD1 zinc finger DUF2127 PF09900.4 gi|452208044|ref|YP_007488166.1| - 0.0028 17.7 6.9 0.061 13.3 2.3 2.3 2 0 0 2 2 2 2 Predicted membrane protein (DUF2127) TMEM238 PF15125.1 gi|452208044|ref|YP_007488166.1| - 0.011 15.6 1.3 0.027 14.3 0.9 1.6 1 0 0 1 1 1 0 TMEM238 protein family HIG_1_N PF04588.8 gi|452208044|ref|YP_007488166.1| - 0.083 12.6 2.0 0.14 11.8 0.4 2.1 2 0 0 2 2 2 0 Hypoxia induced protein conserved region DUF3040 PF11239.3 gi|452208044|ref|YP_007488166.1| - 6.1 6.9 5.7 53 3.9 3.1 2.6 1 1 1 2 2 2 0 Protein of unknown function (DUF3040) MCPsignal PF00015.16 gi|452208045|ref|YP_007488167.1| - 4.7e-41 140.6 67.3 1.5e-40 139.0 24.2 3.7 1 1 2 3 3 3 2 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.20 gi|452208045|ref|YP_007488167.1| - 0.0007 19.7 0.5 0.0007 19.7 0.3 6.1 5 3 1 6 6 6 1 HAMP domain ADIP PF11559.3 gi|452208045|ref|YP_007488167.1| - 0.014 15.2 0.4 0.014 15.2 0.3 3.3 3 0 0 3 3 3 0 Afadin- and alpha -actinin-Binding AAA_27 PF13514.1 gi|452208045|ref|YP_007488167.1| - 0.15 9.7 50.2 0.2 9.3 34.8 1.0 1 0 0 1 1 1 0 AAA domain NPV_P10 PF05531.7 gi|452208045|ref|YP_007488167.1| - 0.15 12.3 28.9 0.98 9.7 0.5 6.3 4 2 2 6 6 6 0 Nucleopolyhedrovirus P10 protein CorA PF01544.13 gi|452208045|ref|YP_007488167.1| - 0.67 8.9 21.3 0.4 9.6 1.6 3.3 1 1 1 3 3 3 0 CorA-like Mg2+ transporter protein Mnd1 PF03962.10 gi|452208045|ref|YP_007488167.1| - 1.7 8.2 36.1 0.66 9.6 2.7 4.1 1 1 2 4 4 4 0 Mnd1 family AAA_23 PF13476.1 gi|452208045|ref|YP_007488167.1| - 1.8 8.8 8.1 0.67 10.2 0.0 2.8 2 1 0 2 2 2 0 AAA domain DUF948 PF06103.6 gi|452208045|ref|YP_007488167.1| - 2.3 8.1 39.1 0.22 11.4 0.6 6.3 5 1 0 6 6 5 0 Bacterial protein of unknown function (DUF948) V_ATPase_I PF01496.14 gi|452208045|ref|YP_007488167.1| - 4.2 5.0 28.4 0.095 10.5 4.5 3.2 1 1 2 3 3 3 0 V-type ATPase 116kDa subunit family Laminin_I PF06008.9 gi|452208045|ref|YP_007488167.1| - 6.8 5.9 41.2 0.69 9.1 1.6 5.0 1 1 2 4 4 4 0 Laminin Domain I TPR_MLP1_2 PF07926.7 gi|452208045|ref|YP_007488167.1| - 7.1 6.3 37.7 1.5 8.5 3.2 4.2 3 1 0 4 4 4 0 TPR/MLP1/MLP2-like protein Methyltransf_18 PF12847.2 gi|452208046|ref|YP_007488168.1| - 3.4e-13 50.1 0.3 6.5e-13 49.2 0.2 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|452208046|ref|YP_007488168.1| - 1.4e-11 44.7 0.0 2.3e-11 44.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|452208046|ref|YP_007488168.1| - 1.4e-11 44.2 0.0 2.1e-11 43.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|452208046|ref|YP_007488168.1| - 1.3e-08 35.1 0.1 3.4e-08 33.8 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|452208046|ref|YP_007488168.1| - 4.4e-08 33.4 0.0 8.3e-08 32.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|452208046|ref|YP_007488168.1| - 5.8e-07 29.3 0.0 8e-07 28.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|452208046|ref|YP_007488168.1| - 1.9e-06 27.1 0.0 2.6e-06 26.7 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_26 PF13659.1 gi|452208046|ref|YP_007488168.1| - 1.1e-05 25.4 1.5 2e-05 24.5 1.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|452208046|ref|YP_007488168.1| - 0.00043 19.7 0.0 0.00059 19.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain RrnaAD PF00398.15 gi|452208046|ref|YP_007488168.1| - 0.089 11.8 0.0 0.14 11.2 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase PrmA PF06325.8 gi|452208046|ref|YP_007488168.1| - 4.2 6.4 5.9 11 5.0 4.0 1.7 1 1 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Flavin_Reduct PF01613.13 gi|452208047|ref|YP_007488169.1| - 7.5e-17 61.5 0.0 9.1e-17 61.3 0.0 1.1 1 0 0 1 1 1 1 Flavin reductase like domain Peptidase_M20 PF01546.23 gi|452208048|ref|YP_007488170.1| - 5.8e-20 71.5 0.3 8.1e-20 71.1 0.2 1.2 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|452208048|ref|YP_007488170.1| - 7.2e-17 61.1 0.5 1.5e-16 60.0 0.3 1.5 1 0 0 1 1 1 1 Peptidase dimerisation domain DUF1611 PF07755.6 gi|452208049|ref|YP_007488171.1| - 0.00059 18.5 0.2 0.001 17.7 0.2 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1611) PMP1_2 PF08114.6 gi|452208050|ref|YP_007488172.1| - 1.2 8.7 6.8 0.14 11.6 0.7 2.6 2 0 0 2 2 2 0 ATPase proteolipid family DUF2249 PF10006.4 gi|452208051|ref|YP_007488173.1| - 9.1e-16 57.1 0.7 1.1e-15 56.9 0.5 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2249) TusA PF01206.12 gi|452208051|ref|YP_007488173.1| - 3.6e-05 23.2 0.0 4.5e-05 22.9 0.0 1.1 1 0 0 1 1 1 1 Sulfurtransferase TusA DUF1470 PF07336.6 gi|452208052|ref|YP_007488174.1| - 0.59 10.4 8.2 0.78 10.0 1.5 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1470) DUF2249 PF10006.4 gi|452208053|ref|YP_007488175.1| - 2.1e-20 72.0 0.3 2.4e-20 71.8 0.2 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2249) Cupin_2 PF07883.6 gi|452208054|ref|YP_007488176.1| - 3e-07 29.8 0.2 4.5e-07 29.2 0.1 1.2 1 0 0 1 1 1 1 Cupin domain Cupin_1 PF00190.17 gi|452208054|ref|YP_007488176.1| - 0.0021 17.4 0.0 0.0025 17.2 0.0 1.1 1 0 0 1 1 1 1 Cupin Cupin_3 PF05899.7 gi|452208054|ref|YP_007488176.1| - 0.0077 15.6 0.1 0.011 15.1 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF861) Cupin_6 PF12852.2 gi|452208054|ref|YP_007488176.1| - 0.0096 15.5 0.6 0.013 15.1 0.4 1.2 1 1 0 1 1 1 1 Cupin AraC_binding_2 PF14525.1 gi|452208054|ref|YP_007488176.1| - 0.012 15.2 0.2 0.014 14.9 0.1 1.2 1 0 0 1 1 1 0 AraC-binding-like domain AraC_binding PF02311.14 gi|452208054|ref|YP_007488176.1| - 0.055 13.1 0.0 0.07 12.8 0.0 1.1 1 0 0 1 1 1 0 AraC-like ligand binding domain DrsE PF02635.10 gi|452208055|ref|YP_007488177.1| - 5.6e-07 29.6 0.0 7e-07 29.3 0.0 1.1 1 0 0 1 1 1 1 DsrE/DsrF-like family HATPase_c PF02518.21 gi|452208056|ref|YP_007488178.1| - 8.1e-22 77.0 0.1 1.6e-21 76.1 0.1 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF_2 PF13185.1 gi|452208056|ref|YP_007488178.1| - 5.4e-18 65.8 0.1 1.8e-17 64.1 0.1 2.0 1 0 0 1 1 1 1 GAF domain Response_reg PF00072.19 gi|452208056|ref|YP_007488178.1| - 7.6e-13 48.4 0.1 3e-12 46.5 0.0 2.0 2 0 0 2 2 2 1 Response regulator receiver domain HisKA PF00512.20 gi|452208056|ref|YP_007488178.1| - 2.6e-11 43.3 1.5 1.2e-10 41.2 1.0 2.3 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain GAF PF01590.21 gi|452208056|ref|YP_007488178.1| - 5e-11 42.9 0.2 2.4e-10 40.7 0.1 2.3 1 1 0 1 1 1 1 GAF domain PAS_4 PF08448.5 gi|452208056|ref|YP_007488178.1| - 5.6e-11 42.4 0.9 5.6e-11 42.4 0.6 2.7 2 0 0 2 2 2 1 PAS fold PAS_9 PF13426.1 gi|452208056|ref|YP_007488178.1| - 1.1e-10 41.8 0.0 3e-10 40.3 0.0 1.8 1 0 0 1 1 1 1 PAS domain PAS PF00989.19 gi|452208056|ref|YP_007488178.1| - 1.8e-08 34.1 0.0 3.9e-08 33.0 0.0 1.6 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.1 gi|452208056|ref|YP_007488178.1| - 4.6e-06 26.2 0.0 2e-05 24.2 0.0 2.2 2 0 0 2 2 1 1 PAS domain GAF_3 PF13492.1 gi|452208056|ref|YP_007488178.1| - 5.4e-06 26.5 0.1 2.4e-05 24.4 0.0 2.1 2 0 0 2 2 2 1 GAF domain HATPase_c_3 PF13589.1 gi|452208056|ref|YP_007488178.1| - 0.00027 20.6 0.0 0.00051 19.7 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.1 gi|452208056|ref|YP_007488178.1| - 0.00074 19.2 2.2 0.08 12.7 0.1 2.9 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain PAS_3 PF08447.6 gi|452208056|ref|YP_007488178.1| - 0.0051 16.8 0.2 0.025 14.6 0.0 2.2 2 0 0 2 2 2 1 PAS fold Glyoxalase_2 PF12681.2 gi|452208059|ref|YP_007488181.1| - 6.9e-25 87.7 5.9 5e-15 56.0 0.2 2.1 2 0 0 2 2 2 2 Glyoxalase-like domain Glyoxalase PF00903.20 gi|452208059|ref|YP_007488181.1| - 4.2e-20 72.0 2.7 7.5e-13 48.5 0.1 2.3 2 0 0 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.1 gi|452208059|ref|YP_007488181.1| - 2.8e-13 49.8 4.2 8.5e-08 32.1 0.1 3.7 2 2 2 4 4 4 3 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.1 gi|452208059|ref|YP_007488181.1| - 2.8e-08 33.8 3.6 0.0084 16.0 0.3 3.8 2 2 0 2 2 2 2 Glyoxalase-like domain FAD_binding_2 PF00890.19 gi|452208060|ref|YP_007488182.1| - 1.5e-90 304.0 10.6 1.9e-90 303.6 7.4 1.1 1 0 0 1 1 1 1 FAD binding domain Succ_DH_flav_C PF02910.15 gi|452208060|ref|YP_007488182.1| - 1.3e-19 70.2 0.0 4.2e-19 68.6 0.0 1.9 3 0 0 3 3 3 1 Fumarate reductase flavoprotein C-term DAO PF01266.19 gi|452208060|ref|YP_007488182.1| - 1.6e-07 30.5 3.7 7.5e-07 28.3 2.5 2.1 1 1 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|452208060|ref|YP_007488182.1| - 1.2e-06 28.5 9.0 7.5e-05 22.6 6.2 2.9 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|452208060|ref|YP_007488182.1| - 0.0003 19.9 1.1 0.00046 19.3 0.8 1.2 1 0 0 1 1 1 1 FAD binding domain HI0933_like PF03486.9 gi|452208060|ref|YP_007488182.1| - 0.0032 16.0 7.7 0.057 11.8 0.7 3.1 3 0 0 3 3 3 2 HI0933-like protein NAD_binding_8 PF13450.1 gi|452208060|ref|YP_007488182.1| - 0.0042 17.0 4.2 0.0084 16.1 1.3 2.9 3 0 0 3 3 3 1 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.1 gi|452208060|ref|YP_007488182.1| - 0.0056 16.7 1.0 0.012 15.6 0.6 1.6 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|452208060|ref|YP_007488182.1| - 0.011 14.6 1.2 0.011 14.6 0.9 1.8 2 0 0 2 2 2 0 Glucose inhibited division protein A Shikimate_DH PF01488.15 gi|452208060|ref|YP_007488182.1| - 0.055 13.5 0.0 0.12 12.5 0.0 1.5 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase Thi4 PF01946.12 gi|452208060|ref|YP_007488182.1| - 0.061 12.4 2.4 0.95 8.5 0.1 2.4 2 0 0 2 2 2 0 Thi4 family DAO PF01266.19 gi|452208061|ref|YP_007488183.1| - 2.4e-12 46.4 3.4 8.5e-12 44.6 2.4 1.8 1 1 0 1 1 1 1 FAD dependent oxidoreductase Gp5_C PF06715.7 gi|452208062|ref|YP_007488184.1| - 9.7 6.3 7.8 11 6.2 0.2 4.0 4 0 0 4 4 4 0 Gp5 C-terminal repeat (3 copies) CCP_MauG PF03150.9 gi|452208063|ref|YP_007488185.1| - 9.4e-54 182.0 0.0 3.8e-51 173.5 0.0 2.4 2 1 0 2 2 2 2 Di-haem cytochrome c peroxidase Cytochrom_C PF00034.16 gi|452208063|ref|YP_007488185.1| - 5.2e-07 30.4 12.9 4.8e-05 24.1 0.1 4.0 4 2 0 4 4 4 2 Cytochrome c DUF1924 PF09086.6 gi|452208063|ref|YP_007488185.1| - 0.00092 19.2 0.1 0.12 12.3 0.0 2.5 2 0 0 2 2 2 1 Domain of unknown function (DUF1924) Cytochrome_C7 PF14522.1 gi|452208063|ref|YP_007488185.1| - 0.012 15.2 0.4 5 6.8 0.0 2.5 2 0 0 2 2 2 0 Cytochrome c7 Cytochrome_CBB3 PF13442.1 gi|452208063|ref|YP_007488185.1| - 0.043 13.9 7.9 3.9 7.6 0.1 3.8 2 2 0 2 2 2 0 Cytochrome C oxidase, cbb3-type, subunit III PSCyt3 PF07627.6 gi|452208063|ref|YP_007488185.1| - 0.11 12.3 0.1 0.96 9.3 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1588) Cytochrome_C554 PF13435.1 gi|452208063|ref|YP_007488185.1| - 0.14 12.2 0.1 21 5.1 0.0 2.4 2 0 0 2 2 2 0 Cytochrome c554 and c-prime Thioredoxin_7 PF13899.1 gi|452208064|ref|YP_007488186.1| - 1.9e-12 47.0 0.0 2.4e-12 46.7 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin-like Thioredox_DsbH PF03190.10 gi|452208064|ref|YP_007488186.1| - 1e-08 35.0 0.0 1.3e-08 34.7 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF255 Thioredoxin_2 PF13098.1 gi|452208064|ref|YP_007488186.1| - 1.7e-07 31.3 0.0 4.4e-07 30.0 0.0 1.6 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin PF00085.15 gi|452208064|ref|YP_007488186.1| - 3.7e-05 23.3 0.0 5.1e-05 22.9 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin AhpC-TSA PF00578.16 gi|452208064|ref|YP_007488186.1| - 0.00028 20.5 0.0 0.00039 20.0 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|452208064|ref|YP_007488186.1| - 0.0017 17.8 0.0 0.002 17.6 0.0 1.2 1 0 0 1 1 1 1 Redoxin Thioredoxin_8 PF13905.1 gi|452208064|ref|YP_007488186.1| - 0.0063 16.6 0.0 0.0095 16.0 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin-like Cytochrom_C_asm PF01578.15 gi|452208065|ref|YP_007488187.1| - 3.3e-28 98.7 12.1 3.3e-28 98.7 8.4 2.6 3 0 0 3 3 3 1 Cytochrome C assembly protein DUF4330 PF14221.1 gi|452208065|ref|YP_007488187.1| - 1.1 9.0 5.1 0.16 11.8 0.3 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4330) CcmB PF03379.8 gi|452208066|ref|YP_007488188.1| - 1.1e-22 80.2 12.3 1.3e-22 80.0 8.5 1.0 1 0 0 1 1 1 1 CcmB protein ABC2_membrane PF01061.19 gi|452208066|ref|YP_007488188.1| - 2.6e-11 43.1 11.1 3.1e-11 42.8 7.7 1.2 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_4 PF12730.2 gi|452208066|ref|YP_007488188.1| - 2.3e-08 33.4 13.5 2.9e-08 33.1 9.3 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|452208066|ref|YP_007488188.1| - 1.5e-07 30.6 17.1 9.1e-07 28.0 11.8 2.0 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|452208066|ref|YP_007488188.1| - 3.8e-07 29.4 9.3 3.8e-07 29.4 6.4 1.8 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|452208066|ref|YP_007488188.1| - 2e-05 23.9 3.6 2.6e-05 23.6 2.5 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC_tran PF00005.22 gi|452208067|ref|YP_007488189.1| - 1.4e-29 103.1 0.0 2e-29 102.6 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|452208067|ref|YP_007488189.1| - 7.6e-12 45.7 0.0 0.00011 22.2 0.0 2.1 2 0 0 2 2 2 2 AAA domain DUF258 PF03193.11 gi|452208067|ref|YP_007488189.1| - 0.00063 18.9 0.1 0.0011 18.2 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_28 PF13521.1 gi|452208067|ref|YP_007488189.1| - 0.0011 18.9 1.9 0.0026 17.7 1.3 1.9 1 1 0 1 1 1 1 AAA domain Miro PF08477.8 gi|452208067|ref|YP_007488189.1| - 0.0012 19.3 0.0 0.003 18.0 0.0 1.7 2 0 0 2 2 2 1 Miro-like protein AAA_16 PF13191.1 gi|452208067|ref|YP_007488189.1| - 0.0024 17.8 1.6 0.0043 17.0 0.7 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|452208067|ref|YP_007488189.1| - 0.0029 17.7 0.3 0.01 15.9 0.2 1.9 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|452208067|ref|YP_007488189.1| - 0.0048 16.3 0.0 0.0092 15.4 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_13 PF13166.1 gi|452208067|ref|YP_007488189.1| - 0.0078 14.7 0.0 0.01 14.3 0.0 1.1 1 0 0 1 1 1 1 AAA domain MobB PF03205.9 gi|452208067|ref|YP_007488189.1| - 0.0099 15.5 0.0 0.019 14.6 0.0 1.4 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_33 PF13671.1 gi|452208067|ref|YP_007488189.1| - 0.012 15.4 0.1 0.033 14.0 0.0 1.9 2 0 0 2 2 2 0 AAA domain ATP-synt_ab PF00006.20 gi|452208067|ref|YP_007488189.1| - 0.015 14.8 0.0 0.017 14.6 0.0 1.3 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain DUF3584 PF12128.3 gi|452208067|ref|YP_007488189.1| - 0.017 12.5 0.0 0.026 11.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) AAA_23 PF13476.1 gi|452208067|ref|YP_007488189.1| - 0.017 15.4 0.0 0.028 14.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|452208067|ref|YP_007488189.1| - 0.02 14.6 0.4 0.19 11.5 0.0 2.4 2 0 0 2 2 2 0 Part of AAA domain NACHT PF05729.7 gi|452208067|ref|YP_007488189.1| - 0.023 14.3 0.0 0.049 13.2 0.0 1.5 1 0 0 1 1 1 0 NACHT domain AAA_30 PF13604.1 gi|452208067|ref|YP_007488189.1| - 0.042 13.4 0.4 0.07 12.7 0.3 1.7 1 1 0 1 1 1 0 AAA domain SRP54 PF00448.17 gi|452208067|ref|YP_007488189.1| - 0.048 13.0 0.0 0.085 12.2 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_17 PF13207.1 gi|452208067|ref|YP_007488189.1| - 0.049 14.4 4.6 0.12 13.2 0.1 2.4 1 1 0 2 2 2 0 AAA domain cobW PF02492.14 gi|452208067|ref|YP_007488189.1| - 0.058 12.8 0.0 0.12 11.7 0.0 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_25 PF13481.1 gi|452208067|ref|YP_007488189.1| - 0.069 12.5 0.1 0.4 10.0 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA PF00004.24 gi|452208067|ref|YP_007488189.1| - 0.091 12.9 0.1 0.35 11.0 0.1 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) MMR_HSR1 PF01926.18 gi|452208067|ref|YP_007488189.1| - 0.12 12.2 0.0 0.22 11.4 0.0 1.7 1 1 0 1 1 1 0 50S ribosome-binding GTPase Viral_helicase1 PF01443.13 gi|452208067|ref|YP_007488189.1| - 0.13 11.7 0.1 0.21 11.0 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase Zeta_toxin PF06414.7 gi|452208067|ref|YP_007488189.1| - 0.36 9.8 0.1 0.36 9.8 0.1 1.9 2 0 0 2 2 2 0 Zeta toxin DUF3022 PF11226.3 gi|452208067|ref|YP_007488189.1| - 0.42 10.5 4.2 5 7.0 0.1 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF3022) CcmE PF03100.10 gi|452208068|ref|YP_007488190.1| - 2.5e-11 43.2 0.1 2.8e-11 43.0 0.0 1.1 1 0 0 1 1 1 1 CcmE Oxidored_molyb PF00174.14 gi|452208069|ref|YP_007488191.1| - 2.4e-37 127.9 0.0 8.8e-37 126.1 0.0 1.8 2 0 0 2 2 2 1 Oxidoreductase molybdopterin binding domain Mo-co_dimer PF03404.11 gi|452208069|ref|YP_007488191.1| - 3e-12 46.2 0.0 5.3e-12 45.5 0.0 1.3 1 0 0 1 1 1 1 Mo-co oxidoreductase dimerisation domain DUF1049 PF06305.6 gi|452208070|ref|YP_007488192.1| - 0.0088 15.4 0.0 0.01 15.3 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1049) DUF4233 PF14017.1 gi|452208070|ref|YP_007488192.1| - 0.044 13.7 0.0 0.049 13.5 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF4233) Cytochrom_C_asm PF01578.15 gi|452208071|ref|YP_007488193.1| - 3.4e-18 65.9 17.7 3.4e-18 65.9 12.3 1.7 2 0 0 2 2 2 1 Cytochrome C assembly protein HemY_N PF07219.8 gi|452208073|ref|YP_007488195.1| - 1.9 8.0 4.2 1.6 8.3 1.1 1.8 1 1 1 2 2 2 0 HemY protein N-terminus Usp PF00582.21 gi|452208074|ref|YP_007488196.1| - 4.2e-29 101.5 4.5 4.7e-29 101.3 3.1 1.0 1 0 0 1 1 1 1 Universal stress protein family Toprim_3 PF13362.1 gi|452208074|ref|YP_007488196.1| - 0.074 13.3 2.4 0.11 12.7 1.2 1.5 1 1 0 1 1 1 0 Toprim domain FAA_hydrolase PF01557.13 gi|452208075|ref|YP_007488197.1| - 5.3e-49 166.6 0.0 6.4e-49 166.3 0.0 1.0 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family MmgE_PrpD PF03972.9 gi|452208076|ref|YP_007488198.1| - 5.9e-28 97.2 5.0 8.5e-28 96.7 3.4 1.2 1 0 0 1 1 1 1 MmgE/PrpD family DUF159 PF02586.9 gi|452208077|ref|YP_007488199.1| - 1.7e-58 197.5 0.0 1.9e-58 197.4 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised ACR, COG2135 PAS_9 PF13426.1 gi|452208079|ref|YP_007488201.1| - 3.4e-75 249.0 8.3 8.8e-17 61.3 0.0 8.4 8 0 0 8 8 8 7 PAS domain PAS_4 PF08448.5 gi|452208079|ref|YP_007488201.1| - 1.4e-69 231.0 28.0 3.5e-15 56.0 0.1 8.1 8 0 0 8 8 8 7 PAS fold PAS_3 PF08447.6 gi|452208079|ref|YP_007488201.1| - 1.3e-51 172.6 4.7 3.3e-19 68.7 0.1 7.1 7 0 0 7 7 7 4 PAS fold PAS PF00989.19 gi|452208079|ref|YP_007488201.1| - 6.8e-49 164.3 5.1 1.9e-10 40.4 0.0 7.6 7 0 0 7 7 7 7 PAS fold PAS_8 PF13188.1 gi|452208079|ref|YP_007488201.1| - 6.6e-34 114.6 3.8 1.9e-08 33.8 0.0 7.8 7 0 0 7 7 7 6 PAS domain HATPase_c PF02518.21 gi|452208079|ref|YP_007488201.1| - 2.5e-21 75.4 0.2 6.2e-21 74.2 0.1 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Response_reg PF00072.19 gi|452208079|ref|YP_007488201.1| - 1.8e-19 69.7 0.0 5.6e-19 68.1 0.0 1.9 1 0 0 1 1 1 1 Response regulator receiver domain PAS_7 PF12860.2 gi|452208079|ref|YP_007488201.1| - 6.7e-18 64.7 14.6 2.4e-06 27.5 0.0 8.4 7 2 1 8 8 8 3 PAS fold HisKA PF00512.20 gi|452208079|ref|YP_007488201.1| - 4e-14 52.3 0.7 4e-14 52.3 0.5 4.1 4 0 0 4 4 4 1 His Kinase A (phospho-acceptor) domain HATPase_c_3 PF13589.1 gi|452208079|ref|YP_007488201.1| - 0.002 17.7 0.0 0.0066 16.0 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_10 PF13596.1 gi|452208079|ref|YP_007488201.1| - 0.11 12.7 2.9 19 5.6 0.0 5.1 6 1 0 6 6 6 0 PAS domain DUF2453 PF10507.4 gi|452208079|ref|YP_007488201.1| - 0.26 11.1 0.1 31 4.3 0.0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2453) DUF479 PF04336.7 gi|452208079|ref|YP_007488201.1| - 1.1 9.4 5.5 3.2 7.9 0.0 3.6 4 0 0 4 4 4 0 Protein of unknown function, DUF479 DUF2892 PF11127.3 gi|452208080|ref|YP_007488202.1| - 4.2e-10 39.3 1.0 5e-10 39.0 0.7 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2892) DUF3040 PF11239.3 gi|452208080|ref|YP_007488202.1| - 0.5 10.4 3.0 0.61 10.1 2.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3040) TM_helix PF05552.7 gi|452208080|ref|YP_007488202.1| - 1.8 8.2 4.9 8 6.2 3.4 1.9 1 1 0 1 1 1 0 Conserved TM helix AstE_AspA PF04952.9 gi|452208081|ref|YP_007488203.1| - 1e-20 73.8 0.0 1.2e-20 73.5 0.0 1.1 1 0 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family SAF PF08666.7 gi|452208081|ref|YP_007488203.1| - 0.01 16.2 0.1 0.13 12.6 0.0 2.3 2 0 0 2 2 2 0 SAF domain Peptidase_M14 PF00246.19 gi|452208081|ref|YP_007488203.1| - 0.07 12.7 0.1 0.33 10.5 0.0 1.9 2 0 0 2 2 2 0 Zinc carboxypeptidase Peptidase_M48 PF01435.13 gi|452208082|ref|YP_007488204.1| - 9.8e-40 136.5 0.0 1.4e-39 136.0 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.6 gi|452208082|ref|YP_007488204.1| - 2.9e-08 33.0 0.0 1e-06 27.9 0.0 2.2 2 0 0 2 2 2 1 BlaR1 peptidase M56 SprT-like PF10263.4 gi|452208082|ref|YP_007488204.1| - 0.038 13.6 0.0 0.053 13.1 0.0 1.2 1 0 0 1 1 1 0 SprT-like family Peptidase_MA_2 PF13485.1 gi|452208082|ref|YP_007488204.1| - 0.062 13.3 0.0 0.12 12.3 0.0 1.5 1 0 0 1 1 1 0 Peptidase MA superfamily DUF4013 PF13197.1 gi|452208082|ref|YP_007488204.1| - 0.065 12.5 10.5 0.52 9.6 2.5 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF4013) Polysacc_synt_3 PF13440.1 gi|452208082|ref|YP_007488204.1| - 0.07 12.5 15.1 0.35 10.2 3.9 2.1 2 0 0 2 2 2 0 Polysaccharide biosynthesis protein Tic20 PF09685.5 gi|452208082|ref|YP_007488204.1| - 0.27 11.2 8.2 1.3 9.0 0.7 2.2 2 0 0 2 2 2 0 Tic20-like protein DUF2207 PF09972.4 gi|452208082|ref|YP_007488204.1| - 2.7 6.4 4.5 9.9 4.6 0.0 2.0 2 0 0 2 2 2 0 Predicted membrane protein (DUF2207) DUF2518 PF10726.4 gi|452208082|ref|YP_007488204.1| - 3.4 7.1 8.5 6 6.3 0.3 2.7 2 1 0 2 2 2 0 Protein of function (DUF2518) ABC2_membrane_4 PF12730.2 gi|452208082|ref|YP_007488204.1| - 4 6.5 17.9 3.5 6.7 3.9 2.1 2 0 0 2 2 2 0 ABC-2 family transporter protein TAT_signal PF10518.4 gi|452208083|ref|YP_007488205.1| - 0.0059 16.5 5.8 0.016 15.1 4.0 1.8 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence tRNA_synt_1c_R1 PF04558.10 gi|452208084|ref|YP_007488206.1| - 0.021 14.3 0.1 0.036 13.5 0.0 1.4 1 1 0 1 1 1 0 Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 MSP1_C PF07462.6 gi|452208084|ref|YP_007488206.1| - 0.05 12.0 0.2 0.059 11.7 0.1 1.1 1 0 0 1 1 1 0 Merozoite surface protein 1 (MSP1) C-terminus TruB_N PF01509.13 gi|452208085|ref|YP_007488207.1| - 1.9e-19 70.3 0.4 2.8e-12 47.0 0.0 3.0 1 1 1 2 2 2 2 TruB family pseudouridylate synthase (N terminal domain) DKCLD PF08068.7 gi|452208085|ref|YP_007488207.1| - 2e-08 34.0 0.0 3.8e-08 33.1 0.0 1.4 1 0 0 1 1 1 1 DKCLD (NUC011) domain PUA PF01472.15 gi|452208085|ref|YP_007488207.1| - 7.1e-06 25.6 0.3 1.5e-05 24.6 0.2 1.6 1 0 0 1 1 1 1 PUA domain Cytidylate_kin2 PF13189.1 gi|452208086|ref|YP_007488208.1| - 5.1e-20 72.1 0.7 4.4e-19 69.0 0.5 1.9 1 1 0 1 1 1 1 Cytidylate kinase-like family AAA_18 PF13238.1 gi|452208086|ref|YP_007488208.1| - 5.3e-17 62.3 0.1 7e-17 61.9 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|452208086|ref|YP_007488208.1| - 2.9e-15 57.1 1.8 4.8e-15 56.4 1.2 1.5 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|452208086|ref|YP_007488208.1| - 1.2e-08 34.9 0.6 3.7e-07 30.1 0.4 2.1 1 1 0 1 1 1 1 AAA domain ADK PF00406.17 gi|452208086|ref|YP_007488208.1| - 1e-05 25.4 0.0 3.5e-05 23.7 0.0 1.8 2 0 0 2 2 2 1 Adenylate kinase SKI PF01202.17 gi|452208086|ref|YP_007488208.1| - 0.00022 21.1 2.1 0.0067 16.3 1.5 2.2 1 1 0 1 1 1 1 Shikimate kinase Cytidylate_kin PF02224.13 gi|452208086|ref|YP_007488208.1| - 0.00032 20.1 0.5 0.0005 19.5 0.3 1.2 1 0 0 1 1 1 1 Cytidylate kinase AAA_28 PF13521.1 gi|452208086|ref|YP_007488208.1| - 0.0016 18.3 0.2 0.0038 17.1 0.0 1.7 1 1 0 1 1 1 1 AAA domain PRK PF00485.13 gi|452208086|ref|YP_007488208.1| - 0.0018 17.8 0.2 0.01 15.3 0.0 2.0 1 1 0 2 2 2 1 Phosphoribulokinase / Uridine kinase family AAA_19 PF13245.1 gi|452208086|ref|YP_007488208.1| - 0.0024 17.6 0.1 0.0062 16.2 0.0 1.7 1 0 0 1 1 1 1 Part of AAA domain NACHT PF05729.7 gi|452208086|ref|YP_007488208.1| - 0.0045 16.6 0.0 0.0067 16.1 0.0 1.2 1 0 0 1 1 1 1 NACHT domain Thymidylate_kin PF02223.12 gi|452208086|ref|YP_007488208.1| - 0.0098 15.2 0.2 1.1 8.5 0.0 2.2 2 0 0 2 2 2 1 Thymidylate kinase AAA_16 PF13191.1 gi|452208086|ref|YP_007488208.1| - 0.012 15.6 2.2 0.032 14.2 1.5 1.8 1 1 0 1 1 1 0 AAA ATPase domain AAA_22 PF13401.1 gi|452208086|ref|YP_007488208.1| - 0.012 15.7 0.0 0.017 15.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|452208086|ref|YP_007488208.1| - 0.035 14.2 0.0 0.055 13.6 0.0 1.3 1 0 0 1 1 1 0 RNA helicase AAA_29 PF13555.1 gi|452208086|ref|YP_007488208.1| - 0.042 13.3 0.2 0.074 12.5 0.1 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain ABC_tran PF00005.22 gi|452208086|ref|YP_007488208.1| - 0.049 13.9 0.0 0.053 13.8 0.0 1.3 1 1 0 1 1 1 0 ABC transporter NTPase_1 PF03266.10 gi|452208086|ref|YP_007488208.1| - 0.051 13.2 0.0 0.083 12.6 0.0 1.3 1 0 0 1 1 1 0 NTPase CoaE PF01121.15 gi|452208086|ref|YP_007488208.1| - 0.051 12.9 0.7 0.14 11.5 0.1 1.9 1 1 0 2 2 2 0 Dephospho-CoA kinase AAA PF00004.24 gi|452208086|ref|YP_007488208.1| - 0.061 13.5 0.0 0.099 12.8 0.0 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) KTI12 PF08433.5 gi|452208086|ref|YP_007488208.1| - 0.07 12.3 0.0 0.094 11.9 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 APS_kinase PF01583.15 gi|452208086|ref|YP_007488208.1| - 0.078 12.6 0.0 0.2 11.3 0.0 1.7 2 0 0 2 2 2 0 Adenylylsulphate kinase CobU PF02283.11 gi|452208086|ref|YP_007488208.1| - 0.15 11.4 0.4 0.38 10.1 0.3 1.6 1 0 0 1 1 1 0 Cobinamide kinase / cobinamide phosphate guanyltransferase AAA_25 PF13481.1 gi|452208086|ref|YP_007488208.1| - 0.17 11.2 1.2 0.27 10.6 0.8 1.6 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|452208086|ref|YP_007488208.1| - 0.22 11.0 2.0 0.2 11.2 0.2 1.8 2 1 0 2 2 2 0 AAA domain DUF106 PF01956.11 gi|452208087|ref|YP_007488209.1| - 1.6e-43 148.1 0.1 2e-43 147.8 0.1 1.1 1 0 0 1 1 1 1 Integral membrane protein DUF106 60KD_IMP PF02096.15 gi|452208087|ref|YP_007488209.1| - 0.00047 19.8 0.5 0.00077 19.1 0.3 1.5 1 1 0 1 1 1 1 60Kd inner membrane protein CBP4 PF07960.6 gi|452208087|ref|YP_007488209.1| - 0.18 11.4 0.9 4.1 7.0 0.0 2.2 2 0 0 2 2 2 0 CBP4 DUF3006 PF11213.3 gi|452208088|ref|YP_007488210.1| - 5.6e-13 48.4 0.0 6.8e-13 48.1 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3006) Lactamase_B PF00753.22 gi|452208089|ref|YP_007488211.1| - 1.7e-16 60.4 8.1 1.3e-15 57.6 5.8 2.2 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|452208089|ref|YP_007488211.1| - 0.00076 19.0 0.2 0.0013 18.3 0.1 1.5 1 1 0 1 1 1 1 Beta-lactamase superfamily domain HATPase_c PF02518.21 gi|452208090|ref|YP_007488212.1| - 1.7e-10 40.6 0.0 3.9e-10 39.4 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.19 gi|452208090|ref|YP_007488212.1| - 2.7e-07 30.3 0.2 1.5e-05 24.7 0.0 2.9 2 1 0 2 2 2 1 PAS fold PAS_4 PF08448.5 gi|452208090|ref|YP_007488212.1| - 0.00033 20.6 0.4 0.032 14.2 0.1 3.1 2 1 0 2 2 2 1 PAS fold HATPase_c_3 PF13589.1 gi|452208090|ref|YP_007488212.1| - 0.0093 15.6 0.0 0.017 14.7 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.1 gi|452208090|ref|YP_007488212.1| - 0.022 14.5 0.0 0.04 13.7 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain PAS_9 PF13426.1 gi|452208090|ref|YP_007488212.1| - 0.026 14.9 0.0 0.8 10.1 0.0 2.9 2 1 0 2 2 2 0 PAS domain HATPase_c_5 PF14501.1 gi|452208090|ref|YP_007488212.1| - 0.12 12.0 0.0 0.2 11.3 0.0 1.4 1 0 0 1 1 1 0 GHKL domain PI3Ka PF00613.15 gi|452208090|ref|YP_007488212.1| - 0.19 10.8 0.0 0.37 9.9 0.0 1.4 1 0 0 1 1 1 0 Phosphoinositide 3-kinase family, accessory domain (PIK domain) ADK PF00406.17 gi|452208091|ref|YP_007488213.1| - 2e-43 147.8 0.0 2.5e-43 147.5 0.0 1.1 1 0 0 1 1 1 1 Adenylate kinase AAA_33 PF13671.1 gi|452208091|ref|YP_007488213.1| - 2.7e-09 37.0 0.1 2.5e-07 30.6 0.0 2.2 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|452208091|ref|YP_007488213.1| - 1.1e-08 35.9 0.3 3.2e-08 34.4 0.2 1.8 1 1 0 1 1 1 1 AAA domain ADK_lid PF05191.9 gi|452208091|ref|YP_007488213.1| - 1e-06 28.2 0.1 2e-06 27.3 0.1 1.5 1 0 0 1 1 1 1 Adenylate kinase, active site lid AAA_18 PF13238.1 gi|452208091|ref|YP_007488213.1| - 7.1e-06 26.3 0.2 2.1e-05 24.8 0.1 1.8 1 1 0 1 1 1 1 AAA domain Zeta_toxin PF06414.7 gi|452208091|ref|YP_007488213.1| - 0.0027 16.8 0.0 0.0055 15.8 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin Thymidylate_kin PF02223.12 gi|452208091|ref|YP_007488213.1| - 0.014 14.7 0.9 16 4.8 0.0 3.0 2 1 1 3 3 3 0 Thymidylate kinase Methyltransf_24 PF13578.1 gi|452208091|ref|YP_007488213.1| - 0.031 15.1 0.5 0.041 14.7 0.3 1.5 1 1 0 1 1 1 0 Methyltransferase domain TrkA_N PF02254.13 gi|452208093|ref|YP_007488215.1| - 1.4e-33 115.2 11.0 4.2e-19 68.6 0.4 2.9 3 0 0 3 3 3 2 TrkA-N domain TrkA_C PF02080.16 gi|452208093|ref|YP_007488215.1| - 2.8e-27 94.0 3.8 1e-12 47.4 0.2 3.3 3 0 0 3 3 3 2 TrkA-C domain Ion_trans_2 PF07885.11 gi|452208093|ref|YP_007488215.1| - 0.059 13.0 0.7 0.11 12.2 0.5 1.4 1 0 0 1 1 1 0 Ion channel ThiF PF00899.16 gi|452208093|ref|YP_007488215.1| - 0.32 10.8 2.9 1.5 8.6 0.2 3.1 3 1 0 3 3 3 0 ThiF family EamA PF00892.15 gi|452208094|ref|YP_007488216.1| - 1e-32 112.8 26.8 1.3e-17 63.9 5.0 2.1 2 0 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|452208094|ref|YP_007488216.1| - 1.7e-05 24.9 7.0 1.7e-05 24.9 4.9 3.9 1 1 2 3 3 3 2 Multidrug resistance efflux transporter DUF2721 PF11026.3 gi|452208094|ref|YP_007488216.1| - 0.17 11.5 0.2 0.17 11.5 0.1 3.3 3 1 1 4 4 4 0 Protein of unknown function (DUF2721) HTH_27 PF13463.1 gi|452208095|ref|YP_007488217.1| - 0.00073 19.8 0.2 0.016 15.5 0.0 2.6 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_IclR PF09339.5 gi|452208095|ref|YP_007488217.1| - 0.0013 18.2 2.8 0.0018 17.7 0.1 2.7 3 1 0 3 3 3 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|452208095|ref|YP_007488217.1| - 0.0027 17.3 0.2 0.01 15.5 0.1 2.0 1 0 0 1 1 1 1 MarR family HTH_23 PF13384.1 gi|452208095|ref|YP_007488217.1| - 0.0033 17.0 0.1 0.011 15.4 0.1 1.9 1 0 0 1 1 1 1 Homeodomain-like domain HTH_5 PF01022.15 gi|452208095|ref|YP_007488217.1| - 0.013 15.1 0.0 0.027 14.1 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family MarR PF01047.17 gi|452208095|ref|YP_007488217.1| - 0.029 14.0 0.0 0.17 11.6 0.0 2.1 1 1 1 2 2 2 0 MarR family HTH_24 PF13412.1 gi|452208095|ref|YP_007488217.1| - 0.041 13.2 0.0 0.11 11.8 0.0 1.8 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding Trp_repressor PF01371.14 gi|452208095|ref|YP_007488217.1| - 0.076 12.9 0.0 0.21 11.5 0.0 1.7 1 0 0 1 1 1 0 Trp repressor protein MFS_1 PF07690.11 gi|452208096|ref|YP_007488218.1| - 0.51 9.0 14.6 0.62 8.7 10.1 1.2 1 0 0 1 1 1 0 Major Facilitator Superfamily YwiC PF14256.1 gi|452208096|ref|YP_007488218.1| - 3.8 7.6 13.5 0.43 10.6 5.3 2.2 2 1 1 3 3 3 0 YwiC-like protein HTH_24 PF13412.1 gi|452208097|ref|YP_007488219.1| - 8.4e-05 21.8 0.0 0.00026 20.2 0.0 1.9 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_32 PF13565.1 gi|452208097|ref|YP_007488219.1| - 0.0001 23.0 0.1 0.00078 20.1 0.1 2.2 2 0 0 2 2 2 1 Homeodomain-like domain HTH_Tnp_Tc3_2 PF01498.13 gi|452208097|ref|YP_007488219.1| - 0.015 15.3 0.1 0.025 14.6 0.1 1.3 1 0 0 1 1 1 0 Transposase Linocin_M18 PF04454.7 gi|452208097|ref|YP_007488219.1| - 0.12 11.2 0.1 0.16 10.8 0.0 1.2 1 0 0 1 1 1 0 Encapsulating protein for peroxidase Peptidase_S24 PF00717.18 gi|452208098|ref|YP_007488220.1| - 1e-07 31.4 0.0 2.2e-07 30.4 0.0 1.5 1 0 0 1 1 1 1 Peptidase S24-like HTH_20 PF12840.2 gi|452208100|ref|YP_007488222.1| - 0.033 13.9 0.1 0.37 10.6 0.1 2.4 1 1 0 1 1 1 0 Helix-turn-helix domain DUF1543 PF07566.7 gi|452208100|ref|YP_007488222.1| - 0.045 13.2 0.0 0.085 12.3 0.0 1.4 1 0 0 1 1 1 0 Domain of Unknown Function (DUF1543) Lar_restr_allev PF14354.1 gi|452208101|ref|YP_007488223.1| - 0.034 14.4 1.0 0.085 13.1 0.7 1.6 1 0 0 1 1 1 0 Restriction alleviation protein Lar zf-IS66 PF13005.2 gi|452208101|ref|YP_007488223.1| - 0.084 12.8 2.2 0.55 10.2 0.2 2.3 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 zinc_ribbon_2 PF13240.1 gi|452208101|ref|YP_007488223.1| - 0.1 12.1 0.1 0.47 10.0 0.1 1.9 1 1 0 1 1 1 0 zinc-ribbon domain DNA_ligase_ZBD PF03119.11 gi|452208101|ref|YP_007488223.1| - 0.24 11.1 2.5 0.21 11.3 0.4 2.0 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zf-ribbon_3 PF13248.1 gi|452208101|ref|YP_007488223.1| - 1.4 8.2 5.3 5.3 6.3 3.7 1.9 1 1 0 1 1 1 0 zinc-ribbon domain TAT_signal PF10518.4 gi|452208102|ref|YP_007488224.1| - 0.13 12.3 1.7 0.36 10.9 1.2 1.8 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence TAT_signal PF10518.4 gi|452208103|ref|YP_007488225.1| - 0.08 12.9 2.6 0.16 12.0 1.8 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence DUF1034 PF06280.7 gi|452208104|ref|YP_007488226.1| - 0.53 10.7 2.9 14 6.1 2.0 2.6 1 1 0 1 1 1 0 Fn3-like domain (DUF1034) TAT_signal PF10518.4 gi|452208104|ref|YP_007488226.1| - 6.9 6.9 8.8 0.2 11.7 0.5 2.4 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence Peptidase_S24 PF00717.18 gi|452208105|ref|YP_007488227.1| - 0.0043 16.6 0.2 0.015 14.9 0.2 1.9 1 0 0 1 1 1 1 Peptidase S24-like HATPase_c PF02518.21 gi|452208106|ref|YP_007488228.1| - 3.4e-14 52.4 0.0 6.7e-14 51.5 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.1 gi|452208106|ref|YP_007488228.1| - 1.9e-06 28.2 0.0 1.9e-05 24.9 0.0 2.5 2 2 0 2 2 2 1 PAS domain PAS_4 PF08448.5 gi|452208106|ref|YP_007488228.1| - 3.5e-06 27.0 1.4 5.5e-05 23.1 0.2 2.9 2 1 0 2 2 2 1 PAS fold HATPase_c_2 PF13581.1 gi|452208106|ref|YP_007488228.1| - 9.3e-06 25.4 0.0 1.7e-05 24.6 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_8 PF13188.1 gi|452208106|ref|YP_007488228.1| - 1e-05 25.2 0.0 8.2e-05 22.3 0.0 2.3 2 0 0 2 2 2 1 PAS domain PAS_7 PF12860.2 gi|452208106|ref|YP_007488228.1| - 3.3e-05 23.8 0.1 0.013 15.4 0.0 2.7 1 1 1 2 2 2 2 PAS fold PAS PF00989.19 gi|452208106|ref|YP_007488228.1| - 0.00068 19.4 0.0 0.0022 17.7 0.0 1.9 2 0 0 2 2 2 1 PAS fold HisKA PF00512.20 gi|452208106|ref|YP_007488228.1| - 0.001 18.9 2.3 0.002 18.0 0.8 2.1 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain HATPase_c_5 PF14501.1 gi|452208106|ref|YP_007488228.1| - 0.024 14.3 0.0 0.096 12.4 0.0 2.1 3 0 0 3 3 3 0 GHKL domain PAS_10 PF13596.1 gi|452208106|ref|YP_007488228.1| - 0.036 14.3 0.0 0.1 12.8 0.0 1.8 1 1 0 1 1 1 0 PAS domain Oxidored_q4 PF00507.14 gi|452208107|ref|YP_007488229.1| - 1.5e-26 92.1 0.0 1.8e-26 91.9 0.0 1.1 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 DUF3270 PF11674.3 gi|452208107|ref|YP_007488229.1| - 1.2 9.1 3.2 0.59 10.1 0.2 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3270) Oxidored_q6 PF01058.17 gi|452208108|ref|YP_007488230.1| - 1.3e-21 76.5 0.1 1.9e-21 76.0 0.1 1.2 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit HGTP_anticodon2 PF12745.2 gi|452208108|ref|YP_007488230.1| - 0.17 11.0 0.0 0.22 10.6 0.0 1.1 1 0 0 1 1 1 0 Anticodon binding domain of tRNAs Complex1_49kDa PF00346.14 gi|452208109|ref|YP_007488231.1| - 5.3e-62 209.2 0.0 8.9e-41 139.6 0.0 2.1 1 1 1 2 2 2 2 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Complex1_30kDa PF00329.14 gi|452208109|ref|YP_007488231.1| - 1.8e-29 101.9 0.0 3.6e-29 101.0 0.0 1.4 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit NADHdh PF00146.16 gi|452208110|ref|YP_007488232.1| - 2.4e-82 276.4 12.7 3e-82 276.1 8.8 1.0 1 0 0 1 1 1 1 NADH dehydrogenase POR_N PF01855.14 gi|452208110|ref|YP_007488232.1| - 1.2 8.6 3.9 1.9 7.9 2.7 1.2 1 0 0 1 1 1 0 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Fer4 PF00037.22 gi|452208111|ref|YP_007488233.1| - 1.6e-12 46.4 9.5 1.2e-06 27.8 2.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|452208111|ref|YP_007488233.1| - 1e-10 41.8 10.2 1.7e-10 41.0 7.1 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|452208111|ref|YP_007488233.1| - 1.7e-10 40.6 8.8 2.3e-10 40.1 6.1 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|452208111|ref|YP_007488233.1| - 1.4e-09 37.6 8.1 2.3e-09 36.9 5.6 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|452208111|ref|YP_007488233.1| - 2.5e-09 37.7 4.6 3.7e-05 24.3 0.1 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.1 gi|452208111|ref|YP_007488233.1| - 2.8e-09 37.1 23.4 7.2e-08 32.5 8.3 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|452208111|ref|YP_007488233.1| - 4.5e-08 32.9 21.7 3.3e-07 30.2 7.2 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|452208111|ref|YP_007488233.1| - 5.7e-08 32.3 12.9 0.00042 20.0 1.2 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|452208111|ref|YP_007488233.1| - 9.4e-08 31.5 9.8 0.00019 21.1 0.9 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|452208111|ref|YP_007488233.1| - 6.7e-07 29.6 5.5 0.0048 17.2 0.1 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|452208111|ref|YP_007488233.1| - 1e-06 28.5 8.8 0.0031 17.7 1.5 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|452208111|ref|YP_007488233.1| - 9.1e-06 25.9 11.5 0.007 16.7 8.8 2.3 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|452208111|ref|YP_007488233.1| - 0.00018 21.8 14.7 0.0077 16.7 2.7 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|452208111|ref|YP_007488233.1| - 0.0031 18.0 9.2 0.16 12.5 0.6 2.6 2 1 0 2 2 2 2 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|452208111|ref|YP_007488233.1| - 0.094 13.1 12.1 1.7 9.0 1.8 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain Oxidored_q3 PF00499.15 gi|452208112|ref|YP_007488234.1| - 5.3e-13 48.9 4.6 5.3e-13 48.9 3.2 1.5 1 1 1 2 2 2 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 DUF4040 PF13244.1 gi|452208112|ref|YP_007488234.1| - 0.00062 19.7 11.1 0.00089 19.2 7.7 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4040) YlaC PF10777.4 gi|452208112|ref|YP_007488234.1| - 0.44 10.0 2.5 0.61 9.6 1.7 1.2 1 0 0 1 1 1 0 Inner membrane protein YlaC Glucos_trans_II PF14264.1 gi|452208112|ref|YP_007488234.1| - 7.6 5.4 11.8 9 5.1 8.2 1.0 1 0 0 1 1 1 0 Glucosyl transferase GtrII YjgP_YjgQ PF03739.9 gi|452208112|ref|YP_007488234.1| - 9.4 4.8 9.2 11 4.6 6.4 1.0 1 0 0 1 1 1 0 Predicted permease YjgP/YjgQ family DUF1418 PF07214.7 gi|452208112|ref|YP_007488234.1| - 9.8 5.8 9.3 2.6 7.7 4.2 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF1418) Oxidored_q2 PF00420.19 gi|452208114|ref|YP_007488236.1| - 6.6e-21 73.7 5.3 7.3e-21 73.5 3.7 1.0 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Oxidored_q1 PF00361.15 gi|452208115|ref|YP_007488237.1| - 1.4e-72 244.1 12.7 4e-72 242.7 8.8 1.8 1 0 0 1 1 1 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1_N PF00662.15 gi|452208115|ref|YP_007488237.1| - 5.7e-12 45.0 0.0 1.8e-11 43.4 0.0 1.9 1 0 0 1 1 1 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Peptidase_M50 PF02163.17 gi|452208115|ref|YP_007488237.1| - 0.0069 15.3 0.0 0.034 13.0 0.0 2.4 2 1 0 2 2 2 1 Peptidase family M50 Oxidored_q1 PF00361.15 gi|452208116|ref|YP_007488238.1| - 9.8e-69 231.6 20.3 1.8e-68 230.7 14.1 1.4 1 0 0 1 1 1 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q5_N PF01059.12 gi|452208116|ref|YP_007488238.1| - 2.6e-05 24.0 0.7 0.00015 21.5 0.0 2.7 2 0 0 2 2 2 1 NADH-ubiquinone oxidoreductase chain 4, amino terminus Oxidored_q1 PF00361.15 gi|452208117|ref|YP_007488239.1| - 5.8e-56 189.7 12.6 5.8e-56 189.7 8.7 1.6 2 0 0 2 2 2 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1_N PF00662.15 gi|452208117|ref|YP_007488239.1| - 0.018 14.5 0.4 0.018 14.5 0.3 2.1 2 0 0 2 2 2 0 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus DHH PF01368.15 gi|452208118|ref|YP_007488240.1| - 1e-14 54.4 0.0 1.8e-14 53.5 0.0 1.4 1 0 0 1 1 1 1 DHH family DHHA1 PF02272.14 gi|452208118|ref|YP_007488240.1| - 1.1e-13 50.6 0.2 3.5e-13 49.0 0.1 1.9 1 0 0 1 1 1 1 DHHA1 domain TrkA_N PF02254.13 gi|452208118|ref|YP_007488240.1| - 0.00027 20.9 1.4 0.00046 20.1 0.5 1.7 2 0 0 2 2 2 1 TrkA-N domain ApbA PF02558.11 gi|452208118|ref|YP_007488240.1| - 0.00084 18.8 0.0 0.0014 18.1 0.0 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Amidohydro_2 PF04909.9 gi|452208118|ref|YP_007488240.1| - 1.4 8.4 6.3 0.9 9.0 2.4 1.9 2 0 0 2 2 2 0 Amidohydrolase CBS PF00571.23 gi|452208119|ref|YP_007488241.1| - 7.5e-28 96.0 1.2 1.1e-12 47.5 0.0 2.4 2 0 0 2 2 2 2 CBS domain ParBc PF02195.13 gi|452208119|ref|YP_007488241.1| - 3.4e-10 39.9 0.2 1.2e-09 38.1 0.0 1.9 2 0 0 2 2 2 1 ParB-like nuclease domain ParBc_2 PF08857.6 gi|452208119|ref|YP_007488241.1| - 0.0035 17.1 0.1 0.045 13.5 0.1 2.3 1 1 0 1 1 1 1 Putative ParB-like nuclease Trep_Strep PF09605.5 gi|452208120|ref|YP_007488242.1| - 1.2 8.7 6.2 1.5 8.4 4.3 1.1 1 0 0 1 1 1 0 Hypothetical bacterial integral membrane protein (Trep_Strep) DUF485 PF04341.7 gi|452208120|ref|YP_007488242.1| - 5.6 6.7 6.9 2.3 7.9 1.3 2.0 2 0 0 2 2 2 0 Protein of unknown function, DUF485 UPF0104 PF03706.8 gi|452208120|ref|YP_007488242.1| - 8 5.6 12.6 11 5.2 8.7 1.3 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0104) N_methyl_3 PF13633.1 gi|452208121|ref|YP_007488243.1| - 7.1 6.7 11.4 17 5.6 7.9 1.7 1 1 0 1 1 1 0 Prokaryotic N-terminal methylation site CcoS PF03597.10 gi|452208121|ref|YP_007488243.1| - 7.7 6.0 5.8 8.8 5.8 4.0 1.2 1 0 0 1 1 1 0 Cytochrome oxidase maturation protein cbb3-type adh_short PF00106.20 gi|452208122|ref|YP_007488244.1| - 3.3e-32 111.7 3.8 4.1e-32 111.3 2.6 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|452208122|ref|YP_007488244.1| - 4.1e-22 79.1 0.0 4.9e-22 78.8 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|452208122|ref|YP_007488244.1| - 2.5e-10 40.3 1.6 3.3e-10 39.9 1.1 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|452208122|ref|YP_007488244.1| - 0.00025 20.5 0.2 0.00029 20.3 0.1 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3HCDH_N PF02737.13 gi|452208122|ref|YP_007488244.1| - 0.097 12.3 0.4 0.17 11.5 0.3 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain COX1 PF00115.15 gi|452208123|ref|YP_007488245.1| - 9.1e-155 515.6 57.0 1.5e-154 514.9 39.5 1.4 1 0 0 1 1 1 1 Cytochrome C and Quinol oxidase polypeptide I DUF2142 PF09913.4 gi|452208124|ref|YP_007488246.1| - 0.0039 15.9 0.6 0.0045 15.7 0.5 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2142) RseC_MucC PF04246.7 gi|452208124|ref|YP_007488246.1| - 0.03 13.8 0.7 0.038 13.5 0.5 1.1 1 0 0 1 1 1 0 Positive regulator of sigma(E), RseC/MucC DUF3149 PF11346.3 gi|452208124|ref|YP_007488246.1| - 0.037 13.6 0.2 0.037 13.6 0.2 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3149) DUF4131 PF13567.1 gi|452208124|ref|YP_007488246.1| - 0.076 12.4 0.0 0.087 12.2 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) DUF2207 PF09972.4 gi|452208124|ref|YP_007488246.1| - 0.12 10.9 0.6 0.13 10.8 0.4 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) OppC_N PF12911.2 gi|452208124|ref|YP_007488246.1| - 0.31 10.4 4.3 6.2 6.2 0.0 2.1 2 0 0 2 2 2 0 N-terminal TM domain of oligopeptide transport permease C DUF3040 PF11239.3 gi|452208125|ref|YP_007488247.1| - 0.022 14.7 1.0 0.022 14.7 0.7 3.0 2 1 1 3 3 3 0 Protein of unknown function (DUF3040) COX3 PF00510.13 gi|452208126|ref|YP_007488248.1| - 1e-34 120.1 23.1 2.9e-34 118.6 16.0 1.7 1 1 0 1 1 1 1 Cytochrome c oxidase subunit III COX2 PF00116.15 gi|452208127|ref|YP_007488249.1| - 2.6e-14 53.0 0.0 4.3e-14 52.3 0.0 1.3 1 0 0 1 1 1 1 Cytochrome C oxidase subunit II, periplasmic domain COX2_TM PF02790.10 gi|452208127|ref|YP_007488249.1| - 5.2e-08 32.7 0.3 8e-08 32.1 0.2 1.3 1 0 0 1 1 1 1 Cytochrome C oxidase subunit II, transmembrane domain SLAC1 PF03595.12 gi|452208127|ref|YP_007488249.1| - 0.1 11.2 0.0 0.14 10.8 0.0 1.1 1 0 0 1 1 1 0 Voltage-dependent anion channel CCSMST1 PF15013.1 gi|452208127|ref|YP_007488249.1| - 0.14 12.0 0.0 0.28 11.1 0.0 1.4 1 0 0 1 1 1 0 CCSMST1 family UbiA PF01040.13 gi|452208128|ref|YP_007488250.1| - 1.1e-25 90.3 23.6 1.1e-25 90.3 16.4 2.8 2 1 1 3 3 3 1 UbiA prenyltransferase family COX15-CtaA PF02628.10 gi|452208128|ref|YP_007488250.1| - 9.9e-16 57.4 16.1 9.9e-16 57.4 11.1 3.6 1 1 1 2 2 2 1 Cytochrome oxidase assembly protein OapA_N PF08525.6 gi|452208128|ref|YP_007488250.1| - 0.081 12.7 2.4 0.37 10.6 0.0 3.1 2 0 0 2 2 2 0 Opacity-associated protein A N-terminal motif GHMP_kinases_N PF00288.21 gi|452208129|ref|YP_007488251.1| - 3.7e-06 26.8 0.2 7.7e-06 25.8 0.1 1.6 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|452208129|ref|YP_007488251.1| - 0.0045 17.1 0.2 0.0095 16.1 0.1 1.5 1 0 0 1 1 1 1 GHMP kinases C terminal KaiC PF06745.8 gi|452208130|ref|YP_007488252.1| - 6.3e-07 28.7 0.0 0.002 17.2 0.0 2.2 2 0 0 2 2 2 2 KaiC AAA_25 PF13481.1 gi|452208130|ref|YP_007488252.1| - 1.2e-05 24.8 0.4 4.7e-05 22.8 0.3 1.9 1 1 0 1 1 1 1 AAA domain NPV_P10 PF05531.7 gi|452208131|ref|YP_007488253.1| - 0.0012 18.9 3.8 0.4 10.9 0.1 3.2 1 1 3 4 4 4 1 Nucleopolyhedrovirus P10 protein Baculo_PEP_C PF04513.7 gi|452208131|ref|YP_007488253.1| - 0.003 17.4 2.0 0.54 10.0 0.3 2.1 2 0 0 2 2 2 1 Baculovirus polyhedron envelope protein, PEP, C terminus Fib_alpha PF08702.5 gi|452208131|ref|YP_007488253.1| - 0.0057 16.7 0.1 0.0096 16.0 0.1 1.4 1 1 0 1 1 1 1 Fibrinogen alpha/beta chain family COG2 PF06148.6 gi|452208131|ref|YP_007488253.1| - 0.0065 16.3 5.6 0.3 10.9 1.2 2.4 1 1 1 2 2 2 1 COG (conserved oligomeric Golgi) complex component, COG2 Matrilin_ccoil PF10393.4 gi|452208131|ref|YP_007488253.1| - 0.0091 15.3 2.7 0.46 9.8 0.0 3.0 4 0 0 4 4 2 1 Trimeric coiled-coil oligomerisation domain of matrilin MtrG PF04210.8 gi|452208131|ref|YP_007488253.1| - 0.0096 15.5 7.5 0.27 10.9 0.0 3.6 3 1 1 4 4 4 1 Tetrahydromethanopterin S-methyltransferase, subunit G AAA_13 PF13166.1 gi|452208131|ref|YP_007488253.1| - 0.01 14.3 0.8 0.014 13.8 0.6 1.1 1 0 0 1 1 1 0 AAA domain Prefoldin_2 PF01920.15 gi|452208131|ref|YP_007488253.1| - 0.013 15.2 2.3 0.53 10.0 0.1 2.6 2 1 0 2 2 2 0 Prefoldin subunit Spc7 PF08317.6 gi|452208131|ref|YP_007488253.1| - 0.015 13.9 3.2 0.021 13.5 2.2 1.2 1 0 0 1 1 1 0 Spc7 kinetochore protein BLOC1_2 PF10046.4 gi|452208131|ref|YP_007488253.1| - 0.021 14.9 3.0 0.59 10.3 0.1 2.7 1 1 2 3 3 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 SNARE PF05739.14 gi|452208131|ref|YP_007488253.1| - 0.025 14.2 6.3 0.89 9.2 0.1 3.2 2 2 2 4 4 3 0 SNARE domain IncA PF04156.9 gi|452208131|ref|YP_007488253.1| - 0.032 13.8 8.3 0.16 11.5 5.8 1.9 1 1 0 1 1 1 0 IncA protein RmuC PF02646.11 gi|452208131|ref|YP_007488253.1| - 0.032 13.0 1.8 3.4 6.4 0.1 2.3 1 1 1 2 2 2 0 RmuC family Reo_sigmaC PF04582.7 gi|452208131|ref|YP_007488253.1| - 0.035 13.2 1.4 0.055 12.6 0.9 1.3 1 0 0 1 1 1 0 Reovirus sigma C capsid protein Apolipoprotein PF01442.13 gi|452208131|ref|YP_007488253.1| - 0.04 13.4 10.7 0.088 12.3 7.4 1.5 1 1 0 1 1 1 0 Apolipoprotein A1/A4/E domain zf-ribbon_3 PF13248.1 gi|452208131|ref|YP_007488253.1| - 0.047 12.9 0.9 2 7.7 0.0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain V_ATPase_I PF01496.14 gi|452208131|ref|YP_007488253.1| - 0.058 11.2 2.9 0.077 10.8 2.0 1.2 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family Mnd1 PF03962.10 gi|452208131|ref|YP_007488253.1| - 0.058 13.0 2.1 0.17 11.4 1.2 1.9 1 1 0 1 1 1 0 Mnd1 family zf-RING_3 PF14369.1 gi|452208131|ref|YP_007488253.1| - 0.059 13.3 1.4 0.13 12.2 1.0 1.6 1 0 0 1 1 1 0 zinc-finger TBPIP PF07106.8 gi|452208131|ref|YP_007488253.1| - 0.062 12.8 2.0 2.9 7.4 0.0 2.1 1 1 1 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Occludin_ELL PF07303.8 gi|452208131|ref|YP_007488253.1| - 0.089 13.5 0.9 3.5 8.4 0.0 2.6 1 1 1 2 2 2 0 Occludin homology domain Syntaxin PF00804.20 gi|452208131|ref|YP_007488253.1| - 0.13 12.4 2.0 4.8 7.3 0.2 2.4 1 1 1 2 2 2 0 Syntaxin FlaC_arch PF05377.6 gi|452208131|ref|YP_007488253.1| - 0.14 12.1 5.8 15 5.6 0.1 3.9 3 1 1 4 4 4 0 Flagella accessory protein C (FlaC) DUF16 PF01519.11 gi|452208131|ref|YP_007488253.1| - 0.15 12.3 0.3 0.31 11.2 0.2 1.6 1 1 0 1 1 1 0 Protein of unknown function DUF16 Med9 PF07544.8 gi|452208131|ref|YP_007488253.1| - 0.15 11.8 1.5 2.3 8.0 0.1 2.7 1 1 2 3 3 3 0 RNA polymerase II transcription mediator complex subunit 9 Synaptobrevin PF00957.16 gi|452208131|ref|YP_007488253.1| - 0.17 11.4 0.4 0.75 9.4 0.1 2.0 2 0 0 2 2 2 0 Synaptobrevin MutS_III PF05192.13 gi|452208131|ref|YP_007488253.1| - 0.18 11.5 2.0 0.25 11.1 1.4 1.2 1 0 0 1 1 1 0 MutS domain III Phasin PF05597.6 gi|452208131|ref|YP_007488253.1| - 0.19 11.5 5.6 6.4 6.5 1.9 3.1 1 1 1 2 2 2 0 Poly(hydroxyalcanoate) granule associated protein (phasin) Laminin_II PF06009.7 gi|452208131|ref|YP_007488253.1| - 0.19 11.4 3.4 1.3 8.8 0.3 2.2 1 1 0 2 2 2 0 Laminin Domain II DUF1664 PF07889.7 gi|452208131|ref|YP_007488253.1| - 0.2 11.4 4.2 1.7 8.4 0.3 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) DUF2730 PF10805.3 gi|452208131|ref|YP_007488253.1| - 0.22 11.2 3.2 4.9 6.9 0.8 2.9 1 1 2 3 3 3 0 Protein of unknown function (DUF2730) CCDC144C PF14915.1 gi|452208131|ref|YP_007488253.1| - 0.28 10.0 6.6 0.063 12.1 0.4 2.0 2 0 0 2 2 2 0 CCDC144C protein coiled-coil region Lebercilin PF15619.1 gi|452208131|ref|YP_007488253.1| - 0.32 10.3 4.3 0.41 10.0 1.0 2.2 1 1 1 2 2 2 0 Ciliary protein causing Leber congenital amaurosis disease Spectrin PF00435.16 gi|452208131|ref|YP_007488253.1| - 0.38 11.0 8.0 5 7.4 2.2 2.2 1 1 0 2 2 2 0 Spectrin repeat CENP-F_leu_zip PF10473.4 gi|452208131|ref|YP_007488253.1| - 0.39 10.5 6.1 1.1 9.0 4.1 1.8 1 1 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 LPP PF04728.8 gi|452208131|ref|YP_007488253.1| - 0.41 10.4 3.4 0.47 10.2 0.1 2.6 2 2 0 2 2 2 0 Lipoprotein leucine-zipper Not3 PF04065.10 gi|452208131|ref|YP_007488253.1| - 0.48 9.6 3.5 0.86 8.8 0.2 2.3 1 1 2 3 3 3 0 Not1 N-terminal domain, CCR4-Not complex component Tropomyosin_1 PF12718.2 gi|452208131|ref|YP_007488253.1| - 0.63 9.8 11.8 0.66 9.8 4.9 2.3 1 1 1 2 2 2 0 Tropomyosin like Syntaxin-6_N PF09177.6 gi|452208131|ref|YP_007488253.1| - 0.74 10.2 6.3 0.66 10.4 2.1 2.3 1 1 0 2 2 2 0 Syntaxin 6, N-terminal HSBP1 PF06825.7 gi|452208131|ref|YP_007488253.1| - 0.8 9.3 2.7 4.8 6.8 0.0 3.1 2 2 1 3 3 3 0 Heat shock factor binding protein 1 HalX PF08663.5 gi|452208131|ref|YP_007488253.1| - 1.1 9.3 16.2 3.3 7.7 1.7 3.7 1 1 2 3 3 3 0 HalX domain YkyA PF10368.4 gi|452208131|ref|YP_007488253.1| - 1.1 8.5 3.5 0.63 9.3 0.6 1.8 1 1 1 2 2 2 0 Putative cell-wall binding lipoprotein CorA PF01544.13 gi|452208131|ref|YP_007488253.1| - 1.2 8.0 9.9 1 8.3 3.5 2.0 1 1 1 2 2 2 0 CorA-like Mg2+ transporter protein DUF4140 PF13600.1 gi|452208131|ref|YP_007488253.1| - 1.4 9.4 13.4 0.75 10.2 0.9 3.1 1 1 2 3 3 3 0 N-terminal domain of unknown function (DUF4140) Fmp27_WPPW PF10359.4 gi|452208131|ref|YP_007488253.1| - 1.5 7.1 5.8 2.7 6.3 0.5 1.9 1 1 1 2 2 2 0 RNA pol II promoter Fmp27 protein domain FtsK_SpoIIIE PF01580.13 gi|452208131|ref|YP_007488253.1| - 1.7 8.0 5.4 2.5 7.5 3.5 1.5 2 0 0 2 2 1 0 FtsK/SpoIIIE family FUSC PF04632.7 gi|452208131|ref|YP_007488253.1| - 3.2 6.0 12.8 8 4.7 8.8 1.6 1 1 0 1 1 1 0 Fusaric acid resistance protein family APG6 PF04111.7 gi|452208131|ref|YP_007488253.1| - 3.5 6.5 5.1 7.9 5.4 3.2 1.7 1 1 1 2 2 2 0 Autophagy protein Apg6 UPF0184 PF03670.8 gi|452208131|ref|YP_007488253.1| - 3.6 7.8 9.7 3.8 7.7 1.9 3.1 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0184) ISG65-75 PF11727.3 gi|452208131|ref|YP_007488253.1| - 3.7 6.5 5.7 8.6 5.3 0.4 2.1 1 1 1 2 2 2 0 Invariant surface glycoprotein XhlA PF10779.4 gi|452208131|ref|YP_007488253.1| - 9.2 6.2 9.7 87 3.1 0.2 3.3 1 1 2 3 3 3 0 Haemolysin XhlA SlyX PF04102.7 gi|452208131|ref|YP_007488253.1| - 9.5 6.6 6.8 21 5.5 0.6 3.1 1 1 2 3 3 3 0 SlyX TFIIS_C PF01096.13 gi|452208133|ref|YP_007488255.1| - 2e-18 65.7 2.5 2e-18 65.7 1.8 3.0 3 0 0 3 3 3 1 Transcription factor S-II (TFIIS) RNA_POL_M_15KD PF02150.11 gi|452208133|ref|YP_007488255.1| - 8.8e-08 31.7 1.3 8.8e-08 31.7 0.9 2.8 3 0 0 3 3 3 1 RNA polymerases M/15 Kd subunit DZR PF12773.2 gi|452208133|ref|YP_007488255.1| - 8.3e-06 25.5 9.6 0.0009 19.0 0.8 2.4 2 1 0 2 2 2 2 Double zinc ribbon OrfB_Zn_ribbon PF07282.6 gi|452208133|ref|YP_007488255.1| - 3.1e-05 23.5 9.5 0.029 14.0 0.9 2.5 2 1 0 2 2 2 2 Putative transposase DNA-binding domain zf-ribbon_3 PF13248.1 gi|452208133|ref|YP_007488255.1| - 5.7e-05 22.1 10.5 0.00034 19.6 0.8 3.4 3 1 0 3 3 3 1 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|452208133|ref|YP_007488255.1| - 0.0002 21.1 9.1 0.00059 19.5 0.6 3.0 2 1 1 3 3 3 1 Transposase zinc-ribbon domain GATA PF00320.22 gi|452208133|ref|YP_007488255.1| - 0.00087 18.5 5.5 0.13 11.6 0.5 3.7 3 1 0 3 3 3 1 GATA zinc finger DNA_RNApol_7kD PF03604.8 gi|452208133|ref|YP_007488255.1| - 0.0028 17.0 13.1 0.52 9.8 0.2 3.6 3 1 0 3 3 3 2 DNA directed RNA polymerase, 7 kDa subunit zinc_ribbon_2 PF13240.1 gi|452208133|ref|YP_007488255.1| - 0.0036 16.7 12.8 0.18 11.3 2.1 3.9 3 1 0 3 3 3 1 zinc-ribbon domain Prok-RING_1 PF14446.1 gi|452208133|ref|YP_007488255.1| - 0.0056 16.3 9.6 0.014 15.0 1.0 3.1 3 0 0 3 3 3 1 Prokaryotic RING finger family 1 UPF0547 PF10571.4 gi|452208133|ref|YP_007488255.1| - 0.0075 15.9 14.6 1.9 8.2 0.5 4.1 4 0 0 4 4 4 2 Uncharacterised protein family UPF0547 PhnA_Zn_Ribbon PF08274.7 gi|452208133|ref|YP_007488255.1| - 0.011 15.4 15.4 0.7 9.7 3.1 3.8 3 1 0 3 3 3 0 PhnA Zinc-Ribbon HypA PF01155.14 gi|452208133|ref|YP_007488255.1| - 0.021 14.4 8.7 0.27 10.9 1.4 2.5 1 1 1 2 2 2 0 Hydrogenase expression/synthesis hypA family zinc_ribbon_5 PF13719.1 gi|452208133|ref|YP_007488255.1| - 0.047 13.2 9.1 0.25 10.9 0.3 3.8 3 1 1 4 4 4 0 zinc-ribbon domain RecR PF02132.10 gi|452208133|ref|YP_007488255.1| - 0.057 12.8 0.4 0.057 12.8 0.3 2.4 3 0 0 3 3 3 0 RecR protein zf-ISL3 PF14690.1 gi|452208133|ref|YP_007488255.1| - 0.09 12.8 6.6 21 5.2 0.3 4.4 4 1 0 4 4 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zinc_ribbon_4 PF13717.1 gi|452208133|ref|YP_007488255.1| - 0.096 12.3 10.4 0.31 10.7 0.4 3.8 3 1 1 4 4 4 0 zinc-ribbon domain DUF977 PF06163.6 gi|452208133|ref|YP_007488255.1| - 0.12 12.1 0.0 0.14 11.9 0.0 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF977) Nudix_N_2 PF14803.1 gi|452208133|ref|YP_007488255.1| - 0.19 11.4 14.0 20 4.9 4.6 4.2 3 1 1 4 4 4 0 Nudix N-terminal zf-C4_Topoisom PF01396.14 gi|452208133|ref|YP_007488255.1| - 0.19 11.2 7.0 5 6.7 0.1 3.8 4 0 0 4 4 4 0 Topoisomerase DNA binding C4 zinc finger Ogr_Delta PF04606.7 gi|452208133|ref|YP_007488255.1| - 0.21 11.2 10.5 7.4 6.3 0.0 3.9 3 1 0 3 3 3 0 Ogr/Delta-like zinc finger A2L_zn_ribbon PF08792.5 gi|452208133|ref|YP_007488255.1| - 0.23 10.9 16.5 0.8 9.2 2.7 3.9 3 1 0 3 3 3 0 A2L zinc ribbon domain RRN7 PF11781.3 gi|452208133|ref|YP_007488255.1| - 0.37 10.3 14.8 7.9 6.0 0.0 4.2 3 1 1 4 4 4 0 RNA polymerase I-specific transcription initiation factor Rrn7 zf-C2HC5 PF06221.8 gi|452208133|ref|YP_007488255.1| - 0.38 10.5 4.9 0.32 10.7 0.4 2.5 3 0 0 3 3 3 0 Putative zinc finger motif, C2HC5-type GFA PF04828.9 gi|452208133|ref|YP_007488255.1| - 0.44 10.5 11.4 7.2 6.6 0.0 3.8 1 1 3 4 4 4 0 Glutathione-dependent formaldehyde-activating enzyme zf-RING_5 PF14634.1 gi|452208133|ref|YP_007488255.1| - 0.47 10.2 11.9 3.1 7.6 0.7 3.1 2 1 0 2 2 2 0 zinc-RING finger domain DUF2318 PF10080.4 gi|452208133|ref|YP_007488255.1| - 0.47 10.2 8.0 1.1 9.0 1.0 2.8 1 1 0 2 2 2 0 Predicted membrane protein (DUF2318) TF_Zn_Ribbon PF08271.7 gi|452208133|ref|YP_007488255.1| - 0.49 9.7 19.1 7.3 6.0 3.7 4.3 3 2 0 3 3 3 0 TFIIB zinc-binding Lar_restr_allev PF14354.1 gi|452208133|ref|YP_007488255.1| - 0.58 10.4 13.4 1.5 9.1 1.5 3.1 1 1 0 2 2 2 0 Restriction alleviation protein Lar zf-IS66 PF13005.2 gi|452208133|ref|YP_007488255.1| - 0.67 9.9 12.2 7.8 6.5 1.1 4.1 3 1 1 4 4 4 0 zinc-finger binding domain of transposase IS66 zf-CCHC_4 PF14392.1 gi|452208133|ref|YP_007488255.1| - 0.67 9.6 0.2 0.67 9.6 0.1 3.4 4 0 0 4 4 4 0 Zinc knuckle ADK_lid PF05191.9 gi|452208133|ref|YP_007488255.1| - 1.2 8.8 14.3 2.4 7.8 0.4 3.9 3 1 0 3 3 3 0 Adenylate kinase, active site lid DUF2296 PF10058.4 gi|452208133|ref|YP_007488255.1| - 1.4 8.7 6.5 1.7 8.4 0.6 2.9 3 1 0 3 3 3 0 Predicted integral membrane metal-binding protein (DUF2296) Zn-ribbon_8 PF09723.5 gi|452208133|ref|YP_007488255.1| - 1.7 8.6 17.5 8 6.5 0.5 3.9 2 2 0 2 2 2 0 Zinc ribbon domain Ribosomal_L44 PF00935.14 gi|452208133|ref|YP_007488255.1| - 1.8 8.6 4.9 25 4.9 0.0 3.4 4 0 0 4 4 4 0 Ribosomal protein L44 zf-trcl PF13451.1 gi|452208133|ref|YP_007488255.1| - 2 8.1 11.4 5.9 6.6 0.1 4.0 4 0 0 4 4 4 0 Probable zinc-binding domain Ima1_N PF09779.4 gi|452208133|ref|YP_007488255.1| - 2.8 8.4 7.1 17 5.9 1.7 3.0 1 1 0 2 2 2 0 Ima1 N-terminal domain Chordopox_RPO7 PF05864.7 gi|452208133|ref|YP_007488255.1| - 3.6 7.7 5.0 5.7 7.1 0.0 2.6 3 0 0 3 3 2 0 Chordopoxvirus DNA-directed RNA polymerase 7 kDa polypeptide (RPO7) zinc-ribbons_6 PF07191.7 gi|452208133|ref|YP_007488255.1| - 3.6 7.4 8.8 0.74 9.6 0.6 2.7 2 1 0 2 2 2 0 zinc-ribbons Zn_ribbon_recom PF13408.1 gi|452208133|ref|YP_007488255.1| - 3.7 7.9 13.8 33 4.8 1.9 3.9 2 2 0 2 2 2 0 Recombinase zinc beta ribbon domain zf-NADH-PPase PF09297.6 gi|452208133|ref|YP_007488255.1| - 4.6 6.8 14.7 10 5.7 3.0 4.0 3 1 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain Mcm10 PF09332.6 gi|452208133|ref|YP_007488255.1| - 4.8 6.4 5.8 1.6 8.0 1.9 1.7 1 1 0 1 1 1 0 Mcm10 replication factor Cytochrom_CIII PF02085.11 gi|452208133|ref|YP_007488255.1| - 5.3 7.1 7.4 27 4.9 0.6 2.8 1 1 1 2 2 2 0 Class III cytochrome C family zf-C3HC4_3 PF13920.1 gi|452208133|ref|YP_007488255.1| - 6.6 6.4 8.0 18 5.0 1.3 3.3 3 1 0 3 3 3 0 Zinc finger, C3HC4 type (RING finger) Nramp PF01566.13 gi|452208134|ref|YP_007488256.1| - 1.9e-61 207.8 33.5 1.9e-61 207.8 23.2 1.7 1 1 1 2 2 2 1 Natural resistance-associated macrophage protein Plant_vir_prot PF01307.12 gi|452208134|ref|YP_007488256.1| - 1.8 8.3 5.1 0.96 9.1 0.2 3.1 3 0 0 3 3 3 0 Plant viral movement protein PhyH PF05721.8 gi|452208135|ref|YP_007488257.1| - 5e-37 128.0 0.1 6e-37 127.7 0.1 1.1 1 0 0 1 1 1 1 Phytanoyl-CoA dioxygenase (PhyH) DUF1479 PF07350.7 gi|452208135|ref|YP_007488257.1| - 0.13 10.7 0.1 4 5.8 0.0 2.6 3 0 0 3 3 3 0 Protein of unknown function (DUF1479) ParA PF10609.4 gi|452208136|ref|YP_007488258.1| - 1.5e-32 111.3 0.0 2.4e-32 110.6 0.0 1.3 1 0 0 1 1 1 1 ParA/MinD ATPase like CbiA PF01656.18 gi|452208136|ref|YP_007488258.1| - 6.6e-19 68.0 0.0 1.2e-18 67.2 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain DUF59 PF01883.14 gi|452208136|ref|YP_007488258.1| - 2.4e-09 37.0 0.5 6.2e-09 35.7 0.1 1.9 2 0 0 2 2 2 1 Domain of unknown function DUF59 AAA_31 PF13614.1 gi|452208136|ref|YP_007488258.1| - 3.6e-07 30.2 0.0 2.9e-06 27.3 0.0 2.0 2 0 0 2 2 2 1 AAA domain MipZ PF09140.6 gi|452208136|ref|YP_007488258.1| - 1.8e-05 24.0 0.0 3e-05 23.2 0.0 1.4 1 1 0 1 1 1 1 ATPase MipZ ArsA_ATPase PF02374.10 gi|452208136|ref|YP_007488258.1| - 2.4e-05 23.5 2.8 3.7e-05 22.9 0.4 2.2 2 1 0 2 2 2 1 Anion-transporting ATPase VirC1 PF07015.6 gi|452208136|ref|YP_007488258.1| - 0.00056 19.0 0.0 0.00097 18.2 0.0 1.3 1 0 0 1 1 1 1 VirC1 protein AAA_26 PF13500.1 gi|452208136|ref|YP_007488258.1| - 0.00067 19.3 0.1 0.38 10.3 0.2 2.2 2 0 0 2 2 2 2 AAA domain SRP54 PF00448.17 gi|452208136|ref|YP_007488258.1| - 0.0047 16.3 0.2 0.0076 15.7 0.1 1.2 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain Fer4_NifH PF00142.13 gi|452208136|ref|YP_007488258.1| - 0.0072 15.5 0.1 0.012 14.7 0.1 1.3 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family YhjQ PF06564.7 gi|452208136|ref|YP_007488258.1| - 0.011 15.1 0.8 0.018 14.4 0.3 1.5 2 0 0 2 2 2 0 YhjQ protein APS_kinase PF01583.15 gi|452208136|ref|YP_007488258.1| - 0.012 15.2 0.0 0.021 14.5 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_25 PF13481.1 gi|452208136|ref|YP_007488258.1| - 0.02 14.2 0.0 0.04 13.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|452208136|ref|YP_007488258.1| - 0.021 14.5 1.3 0.83 9.4 0.3 2.3 2 0 0 2 2 2 0 Part of AAA domain AAA_17 PF13207.1 gi|452208136|ref|YP_007488258.1| - 0.098 13.4 0.0 0.26 12.0 0.0 1.7 1 0 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|452208136|ref|YP_007488258.1| - 0.11 11.6 0.0 0.17 11.0 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF258 ECF-ribofla_trS PF07155.7 gi|452208137|ref|YP_007488259.1| - 0.021 14.5 3.2 0.023 14.3 2.2 1.0 1 0 0 1 1 1 0 ECF-type riboflavin transporter, S component Yip1 PF04893.12 gi|452208137|ref|YP_007488259.1| - 0.04 13.4 7.8 0.049 13.1 5.4 1.1 1 0 0 1 1 1 0 Yip1 domain DUF1109 PF06532.6 gi|452208137|ref|YP_007488259.1| - 0.05 13.0 1.8 0.054 12.9 1.2 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1109) ZYG-11_interact PF05884.7 gi|452208137|ref|YP_007488259.1| - 0.11 11.5 0.8 0.18 10.8 0.6 1.3 1 0 0 1 1 1 0 Interactor of ZYG-11 NrfD PF03916.9 gi|452208138|ref|YP_007488260.1| - 3.8e-24 85.6 24.6 3.8e-24 85.6 17.1 1.6 2 0 0 2 2 2 1 Polysulphide reductase, NrfD UCR_6-4kD PF08997.5 gi|452208138|ref|YP_007488260.1| - 7.8 6.2 10.3 0.39 10.4 0.4 2.9 3 0 0 3 3 3 0 Ubiquinol-cytochrome C reductase complex, 6.4kD protein Fer4_11 PF13247.1 gi|452208139|ref|YP_007488261.1| - 2e-17 62.9 14.3 7.7e-16 57.7 3.2 3.2 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|452208139|ref|YP_007488261.1| - 3.5e-10 40.0 25.4 5.7e-05 23.4 4.8 3.9 2 2 2 4 4 4 3 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|452208139|ref|YP_007488261.1| - 4.9e-09 36.3 25.8 1.6e-06 28.3 4.9 3.3 2 2 1 3 3 3 3 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|452208139|ref|YP_007488261.1| - 2.5e-07 30.4 23.5 0.0031 17.2 5.0 3.4 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|452208139|ref|YP_007488261.1| - 1.6e-06 27.6 11.4 4.1e-05 23.2 1.4 4.9 6 0 0 6 6 5 2 4Fe-4S binding domain Fer4 PF00037.22 gi|452208139|ref|YP_007488261.1| - 0.00013 21.3 2.9 0.00013 21.3 2.0 5.0 5 0 0 5 5 5 3 4Fe-4S binding domain Fer4_6 PF12837.2 gi|452208139|ref|YP_007488261.1| - 0.00016 21.4 11.9 0.00031 20.4 1.5 5.0 5 0 0 5 5 5 3 4Fe-4S binding domain Fer4_4 PF12800.2 gi|452208139|ref|YP_007488261.1| - 0.0019 18.3 2.6 0.0019 18.3 1.8 4.4 4 1 0 4 4 3 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|452208139|ref|YP_007488261.1| - 0.0028 17.6 23.8 0.02 14.8 4.1 3.7 2 2 0 2 2 2 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|452208139|ref|YP_007488261.1| - 0.0042 16.9 20.4 3.2 7.6 5.5 3.7 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|452208139|ref|YP_007488261.1| - 0.034 14.4 27.5 0.22 11.9 3.6 4.5 1 1 4 5 5 5 0 4Fe-4S dicluster domain TAT_signal PF10518.4 gi|452208139|ref|YP_007488261.1| - 0.1 12.6 3.3 0.18 11.8 2.3 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Fer4_15 PF13459.1 gi|452208139|ref|YP_007488261.1| - 2.7 8.6 14.4 2.9 8.5 0.4 3.8 2 1 1 3 3 3 0 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|452208139|ref|YP_007488261.1| - 2.7 8.7 40.4 0.3 11.7 3.8 4.8 4 1 0 4 4 4 0 4Fe-4S binding domain DS PF01916.12 gi|452208140|ref|YP_007488262.1| - 1.7e-73 247.3 0.0 2e-73 247.1 0.0 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase zf-ribbon_3 PF13248.1 gi|452208141|ref|YP_007488263.1| - 0.0018 17.3 0.8 0.84 8.9 0.1 2.1 2 0 0 2 2 2 2 zinc-ribbon domain HypA PF01155.14 gi|452208141|ref|YP_007488263.1| - 0.0021 17.7 0.2 0.0021 17.7 0.1 1.0 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family DUF2387 PF09526.5 gi|452208141|ref|YP_007488263.1| - 0.0045 16.8 0.5 0.64 9.9 0.1 2.1 2 0 0 2 2 2 1 Probable metal-binding protein (DUF2387) zinc_ribbon_2 PF13240.1 gi|452208141|ref|YP_007488263.1| - 0.0075 15.7 1.7 1.7 8.2 0.2 2.2 2 0 0 2 2 2 2 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|452208141|ref|YP_007488263.1| - 0.012 15.5 4.9 0.3 11.0 3.3 2.1 1 1 0 1 1 1 0 Zinc ribbon domain Prok-RING_1 PF14446.1 gi|452208141|ref|YP_007488263.1| - 0.014 15.1 0.5 3.5 7.4 0.0 2.1 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 DZR PF12773.2 gi|452208141|ref|YP_007488263.1| - 0.019 14.7 2.3 0.11 12.2 1.6 1.9 1 1 0 1 1 1 0 Double zinc ribbon TFIIS_C PF01096.13 gi|452208141|ref|YP_007488263.1| - 0.02 14.5 1.8 0.46 10.1 0.1 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) TF_Zn_Ribbon PF08271.7 gi|452208141|ref|YP_007488263.1| - 0.02 14.2 1.5 0.05 12.9 0.2 1.9 2 0 0 2 2 2 0 TFIIB zinc-binding A2L_zn_ribbon PF08792.5 gi|452208141|ref|YP_007488263.1| - 0.048 13.1 1.0 0.67 9.4 0.1 2.1 2 0 0 2 2 2 0 A2L zinc ribbon domain Molybdop_Fe4S4 PF04879.11 gi|452208141|ref|YP_007488263.1| - 0.055 13.2 0.2 2.7 7.8 0.0 2.1 1 1 1 2 2 2 0 Molybdopterin oxidoreductase Fe4S4 domain zf-tcix PF14952.1 gi|452208141|ref|YP_007488263.1| - 0.089 12.1 0.8 0.4 10.0 0.1 1.9 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding Zn_Tnp_IS1595 PF12760.2 gi|452208141|ref|YP_007488263.1| - 0.11 12.2 0.8 1.8 8.4 0.0 2.1 2 0 0 2 2 2 0 Transposase zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|452208141|ref|YP_007488263.1| - 0.18 11.4 2.8 5.3 6.7 0.1 2.0 1 1 1 2 2 2 0 Putative transposase DNA-binding domain DUF35_N PF12172.3 gi|452208141|ref|YP_007488263.1| - 0.19 11.6 6.7 0.79 9.7 1.1 2.8 2 1 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) DUF1610 PF07754.6 gi|452208141|ref|YP_007488263.1| - 0.2 11.8 2.4 5 7.3 0.8 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) Zn_Tnp_IS1 PF03811.8 gi|452208141|ref|YP_007488263.1| - 0.24 10.9 3.2 0.84 9.1 0.1 2.1 2 0 0 2 2 2 0 InsA N-terminal domain Nudix_N_2 PF14803.1 gi|452208141|ref|YP_007488263.1| - 0.31 10.7 4.2 8.6 6.1 0.2 2.3 2 0 0 2 2 2 0 Nudix N-terminal PhnA_Zn_Ribbon PF08274.7 gi|452208141|ref|YP_007488263.1| - 0.31 10.8 1.9 0.99 9.2 0.1 2.0 2 0 0 2 2 2 0 PhnA Zinc-Ribbon Rubredoxin PF00301.15 gi|452208141|ref|YP_007488263.1| - 0.33 10.8 2.5 1.3 8.9 1.7 1.8 1 1 0 1 1 1 0 Rubredoxin Lar_restr_allev PF14354.1 gi|452208141|ref|YP_007488263.1| - 0.34 11.2 1.7 1.9 8.8 1.1 1.9 1 1 0 1 1 1 0 Restriction alleviation protein Lar DNA_RNApol_7kD PF03604.8 gi|452208141|ref|YP_007488263.1| - 0.48 9.9 2.3 13 5.3 0.1 2.1 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zf-RanBP PF00641.13 gi|452208141|ref|YP_007488263.1| - 0.53 9.4 2.4 3.5 6.8 0.0 2.1 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others zf-ISL3 PF14690.1 gi|452208141|ref|YP_007488263.1| - 1.1 9.3 4.5 4.1 7.5 0.3 2.3 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 UPF0547 PF10571.4 gi|452208141|ref|YP_007488263.1| - 2.4 7.9 5.9 2 8.1 0.3 2.1 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 HD PF01966.17 gi|452208142|ref|YP_007488264.1| - 2.4e-09 37.2 4.3 1.6e-08 34.5 2.9 2.5 1 1 0 1 1 1 1 HD domain UPF0052 PF01933.13 gi|452208143|ref|YP_007488265.1| - 5.7e-38 130.9 0.0 9.4e-38 130.2 0.0 1.3 1 1 0 1 1 1 1 Uncharacterised protein family UPF0052 Neuregulin PF02158.10 gi|452208143|ref|YP_007488265.1| - 0.19 10.4 0.4 0.27 9.9 0.3 1.1 1 0 0 1 1 1 0 Neuregulin family Dus PF01207.12 gi|452208144|ref|YP_007488266.1| - 0.00014 20.8 1.8 0.0022 16.8 1.3 2.0 1 1 0 1 1 1 1 Dihydrouridine synthase (Dus) PcrB PF01884.12 gi|452208144|ref|YP_007488266.1| - 0.0014 17.9 0.1 0.0023 17.2 0.1 1.3 1 0 0 1 1 1 1 PcrB family FMN_dh PF01070.13 gi|452208144|ref|YP_007488266.1| - 0.015 14.1 0.5 0.015 14.1 0.4 1.5 2 0 0 2 2 2 0 FMN-dependent dehydrogenase Radical_SAM PF04055.16 gi|452208144|ref|YP_007488266.1| - 0.04 14.0 0.0 6.8 6.8 0.0 2.8 1 1 2 3 3 3 0 Radical SAM superfamily CitG PF01874.11 gi|452208145|ref|YP_007488267.1| - 2.6e-66 223.6 2.9 2.9e-66 223.4 2.0 1.0 1 0 0 1 1 1 1 ATP:dephospho-CoA triphosphoribosyl transferase DUF447 PF04289.7 gi|452208146|ref|YP_007488268.1| - 9.3e-41 139.3 0.0 1.1e-40 139.1 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF447) TroA PF01297.12 gi|452208147|ref|YP_007488269.1| - 1.6e-49 168.4 0.0 1.9e-49 168.2 0.0 1.0 1 0 0 1 1 1 1 Periplasmic solute binding protein family ABC_tran PF00005.22 gi|452208148|ref|YP_007488270.1| - 5.2e-31 107.7 0.0 6.7e-31 107.4 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|452208148|ref|YP_007488270.1| - 6.1e-10 39.5 0.0 0.00016 21.7 0.0 2.1 2 0 0 2 2 2 2 AAA domain SbcCD_C PF13558.1 gi|452208148|ref|YP_007488270.1| - 9.7e-05 22.2 0.6 0.0018 18.1 0.4 2.2 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit SMC_N PF02463.14 gi|452208148|ref|YP_007488270.1| - 0.0015 17.7 0.4 0.014 14.6 0.3 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|452208148|ref|YP_007488270.1| - 0.0018 17.7 0.1 0.0039 16.7 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|452208148|ref|YP_007488270.1| - 0.0061 16.6 0.1 0.051 13.7 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|452208148|ref|YP_007488270.1| - 0.01 16.6 0.1 0.051 14.3 0.0 2.0 2 1 0 2 2 2 0 AAA domain AAA_16 PF13191.1 gi|452208148|ref|YP_007488270.1| - 0.011 15.7 1.2 0.027 14.4 0.9 1.9 1 1 0 1 1 1 0 AAA ATPase domain AAA_30 PF13604.1 gi|452208148|ref|YP_007488270.1| - 0.014 14.9 0.1 0.23 11.0 0.0 2.1 2 0 0 2 2 2 0 AAA domain MobB PF03205.9 gi|452208148|ref|YP_007488270.1| - 0.017 14.8 0.0 0.032 13.9 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_23 PF13476.1 gi|452208148|ref|YP_007488270.1| - 0.023 15.0 0.0 0.034 14.4 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|452208148|ref|YP_007488270.1| - 0.027 13.9 0.0 0.056 12.8 0.0 1.5 2 0 0 2 2 2 0 AAA-like domain AAA_33 PF13671.1 gi|452208148|ref|YP_007488270.1| - 0.034 14.0 0.1 0.057 13.2 0.1 1.7 1 1 0 1 1 1 0 AAA domain ABC_ATPase PF09818.4 gi|452208148|ref|YP_007488270.1| - 0.054 12.0 0.2 8.8 4.7 0.0 2.8 2 1 0 2 2 2 0 Predicted ATPase of the ABC class AAA_19 PF13245.1 gi|452208148|ref|YP_007488270.1| - 0.063 13.0 0.2 0.26 11.0 0.0 2.0 2 0 0 2 2 2 0 Part of AAA domain AAA_25 PF13481.1 gi|452208148|ref|YP_007488270.1| - 0.093 12.1 0.5 0.66 9.3 0.3 2.1 1 1 0 1 1 1 0 AAA domain Miro PF08477.8 gi|452208148|ref|YP_007488270.1| - 0.097 13.1 0.0 0.18 12.2 0.0 1.5 1 0 0 1 1 1 0 Miro-like protein NACHT PF05729.7 gi|452208148|ref|YP_007488270.1| - 0.12 12.0 0.0 0.18 11.4 0.0 1.3 1 0 0 1 1 1 0 NACHT domain MutS_V PF00488.16 gi|452208148|ref|YP_007488270.1| - 0.14 11.5 0.0 0.25 10.6 0.0 1.4 1 0 0 1 1 1 0 MutS domain V Spore_IV_A PF09547.5 gi|452208148|ref|YP_007488270.1| - 0.14 10.8 0.0 0.2 10.3 0.0 1.1 1 0 0 1 1 1 0 Stage IV sporulation protein A (spore_IV_A) ABC-3 PF00950.12 gi|452208149|ref|YP_007488271.1| - 1.3e-61 208.1 38.6 1.5e-61 207.9 26.8 1.0 1 0 0 1 1 1 1 ABC 3 transport family FecCD PF01032.13 gi|452208149|ref|YP_007488271.1| - 0.00016 20.6 34.5 0.00016 20.6 23.9 1.9 1 1 0 2 2 2 1 FecCD transport family UreF PF01730.11 gi|452208150|ref|YP_007488272.1| - 2.2e-31 108.9 0.3 3e-31 108.4 0.2 1.2 1 0 0 1 1 1 1 UreF UreE_N PF02814.10 gi|452208151|ref|YP_007488273.1| - 8.4e-12 44.4 2.2 1.5e-11 43.5 0.7 2.0 2 0 0 2 2 2 1 UreE urease accessory protein, N-terminal domain UreE_C PF05194.7 gi|452208151|ref|YP_007488273.1| - 0.0009 19.2 35.3 30 4.8 23.9 3.8 2 1 0 2 2 2 1 UreE urease accessory protein, C-terminal domain UreD PF01774.12 gi|452208152|ref|YP_007488274.1| - 7e-47 159.5 0.1 8.3e-47 159.3 0.1 1.0 1 0 0 1 1 1 1 UreD urease accessory protein cobW PF02492.14 gi|452208153|ref|YP_007488275.1| - 9.5e-36 122.8 0.0 1.1e-35 122.6 0.0 1.0 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain ArgK PF03308.11 gi|452208153|ref|YP_007488275.1| - 3.4e-10 39.1 0.9 4.2e-09 35.5 0.6 2.0 1 1 0 1 1 1 1 ArgK protein MobB PF03205.9 gi|452208153|ref|YP_007488275.1| - 0.00021 21.0 0.0 0.00037 20.1 0.0 1.6 1 1 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_10 PF12846.2 gi|452208153|ref|YP_007488275.1| - 0.0028 17.1 0.0 0.0041 16.6 0.0 1.2 1 0 0 1 1 1 1 AAA-like domain NTPase_1 PF03266.10 gi|452208153|ref|YP_007488275.1| - 0.0043 16.7 0.0 0.0063 16.2 0.0 1.2 1 0 0 1 1 1 1 NTPase AAA_16 PF13191.1 gi|452208153|ref|YP_007488275.1| - 0.0045 16.9 0.0 0.0073 16.3 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_18 PF13238.1 gi|452208153|ref|YP_007488275.1| - 0.0083 16.4 0.0 0.014 15.6 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.1 gi|452208153|ref|YP_007488275.1| - 0.0094 15.5 0.0 0.013 15.1 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|452208153|ref|YP_007488275.1| - 0.013 15.2 0.1 0.032 13.9 0.1 1.6 1 0 0 1 1 1 0 Part of AAA domain LpxK PF02606.9 gi|452208153|ref|YP_007488275.1| - 0.014 14.3 0.1 0.039 12.9 0.0 1.7 1 1 1 2 2 2 0 Tetraacyldisaccharide-1-P 4'-kinase NACHT PF05729.7 gi|452208153|ref|YP_007488275.1| - 0.02 14.5 0.0 0.098 12.3 0.0 1.9 2 0 0 2 2 2 0 NACHT domain AAA_17 PF13207.1 gi|452208153|ref|YP_007488275.1| - 0.021 15.6 0.0 0.029 15.2 0.0 1.7 1 1 0 1 1 1 0 AAA domain SRP54 PF00448.17 gi|452208153|ref|YP_007488275.1| - 0.022 14.2 0.0 0.027 13.9 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Arch_ATPase PF01637.13 gi|452208153|ref|YP_007488275.1| - 0.041 13.5 0.0 0.058 13.0 0.0 1.2 1 0 0 1 1 1 0 Archaeal ATPase ATP_bind_1 PF03029.12 gi|452208153|ref|YP_007488275.1| - 0.044 13.3 0.0 0.096 12.2 0.0 1.5 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein UPF0079 PF02367.12 gi|452208153|ref|YP_007488275.1| - 0.052 13.1 0.0 0.091 12.3 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 Zeta_toxin PF06414.7 gi|452208153|ref|YP_007488275.1| - 0.073 12.1 0.0 0.11 11.5 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin KTI12 PF08433.5 gi|452208153|ref|YP_007488275.1| - 0.11 11.7 0.0 0.15 11.2 0.0 1.1 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA_22 PF13401.1 gi|452208153|ref|YP_007488275.1| - 0.15 12.1 0.0 0.23 11.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain Urease_gamma PF00547.13 gi|452208154|ref|YP_007488276.1| - 1.2e-43 147.1 0.1 1.3e-43 146.9 0.1 1.0 1 0 0 1 1 1 1 Urease, gamma subunit DUF732 PF05305.9 gi|452208154|ref|YP_007488276.1| - 0.13 12.3 0.0 0.18 11.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF732) Amidohydro_1 PF01979.15 gi|452208155|ref|YP_007488277.1| - 2.8e-60 204.7 1.7 3.7e-60 204.3 1.2 1.1 1 0 0 1 1 1 1 Amidohydrolase family Urease_alpha PF00449.15 gi|452208155|ref|YP_007488277.1| - 1.2e-47 161.0 1.6 2.3e-47 160.0 1.1 1.5 1 0 0 1 1 1 1 Urease alpha-subunit, N-terminal domain Amidohydro_3 PF07969.6 gi|452208155|ref|YP_007488277.1| - 1.5e-07 31.0 0.9 1.5e-07 31.0 0.6 2.3 2 0 0 2 2 2 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|452208155|ref|YP_007488277.1| - 1.6e-07 30.9 2.5 4.9e-07 29.4 1.7 1.9 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_4 PF13147.1 gi|452208155|ref|YP_007488277.1| - 3.4e-06 27.2 4.3 0.00016 21.8 3.0 2.7 1 1 0 1 1 1 1 Amidohydrolase Urease_beta PF00699.15 gi|452208156|ref|YP_007488278.1| - 6.1e-45 151.1 0.0 7.7e-45 150.8 0.0 1.1 1 0 0 1 1 1 1 Urease beta subunit Gram_pos_anchor PF00746.16 gi|452208157|ref|YP_007488279.1| - 0.076 12.8 1.2 0.1 12.4 0.9 1.2 1 0 0 1 1 1 0 Gram positive anchor Peripla_BP_6 PF13458.1 gi|452208158|ref|YP_007488280.1| - 3.5e-81 273.2 0.0 4.2e-81 272.9 0.0 1.0 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_5 PF13433.1 gi|452208158|ref|YP_007488280.1| - 3.5e-76 256.3 0.0 4.7e-76 255.8 0.0 1.0 1 0 0 1 1 1 1 Periplasmic binding protein domain ANF_receptor PF01094.23 gi|452208158|ref|YP_007488280.1| - 2e-07 30.1 0.0 0.0086 14.9 0.0 2.4 2 1 0 2 2 2 2 Receptor family ligand binding region TAT_signal PF10518.4 gi|452208158|ref|YP_007488280.1| - 0.15 12.1 5.4 0.31 11.1 3.7 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence BPD_transp_2 PF02653.11 gi|452208159|ref|YP_007488281.1| - 1e-41 142.6 39.0 1.3e-41 142.3 27.0 1.1 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.11 gi|452208160|ref|YP_007488282.1| - 1.1e-28 99.9 44.1 1.7e-28 99.3 30.6 1.3 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component ABC_tran PF00005.22 gi|452208161|ref|YP_007488283.1| - 5.2e-32 111.0 0.0 7.4e-32 110.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|452208161|ref|YP_007488283.1| - 1.2e-07 32.0 0.2 9.5e-05 22.4 0.0 2.1 1 1 0 2 2 2 2 AAA domain AAA_23 PF13476.1 gi|452208161|ref|YP_007488283.1| - 2.3e-06 28.1 0.0 2.8e-06 27.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|452208161|ref|YP_007488283.1| - 4.3e-05 22.9 0.0 8.7e-05 21.9 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|452208161|ref|YP_007488283.1| - 7.2e-05 22.1 0.3 0.062 12.5 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain DUF258 PF03193.11 gi|452208161|ref|YP_007488283.1| - 0.00092 18.4 0.0 0.0014 17.8 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_16 PF13191.1 gi|452208161|ref|YP_007488283.1| - 0.0027 17.7 0.2 0.0093 15.9 0.1 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_15 PF13175.1 gi|452208161|ref|YP_007488283.1| - 0.0073 15.4 0.0 0.014 14.4 0.0 1.4 2 0 0 2 2 2 1 AAA ATPase domain AAA_30 PF13604.1 gi|452208161|ref|YP_007488283.1| - 0.0076 15.8 0.0 0.019 14.5 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_14 PF13173.1 gi|452208161|ref|YP_007488283.1| - 0.038 13.8 0.0 0.069 13.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.7 gi|452208161|ref|YP_007488283.1| - 0.055 12.5 0.0 0.089 11.8 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin AAA_25 PF13481.1 gi|452208161|ref|YP_007488283.1| - 0.083 12.2 0.0 0.12 11.7 0.0 1.5 1 1 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|452208161|ref|YP_007488283.1| - 0.095 13.5 0.1 0.22 12.3 0.1 1.9 1 1 0 2 2 2 0 AAA domain Adeno_IVa2 PF02456.10 gi|452208161|ref|YP_007488283.1| - 0.11 11.1 0.0 0.24 9.9 0.0 1.6 1 1 1 2 2 2 0 Adenovirus IVa2 protein AAA_13 PF13166.1 gi|452208161|ref|YP_007488283.1| - 0.12 10.8 0.0 0.19 10.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain BCA_ABC_TP_C PF12399.3 gi|452208161|ref|YP_007488283.1| - 0.12 12.0 0.1 0.27 10.9 0.1 1.6 1 0 0 1 1 1 0 Branched-chain amino acid ATP-binding cassette transporter AAA_22 PF13401.1 gi|452208161|ref|YP_007488283.1| - 0.13 12.3 0.0 0.17 12.0 0.0 1.5 1 1 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|452208162|ref|YP_007488284.1| - 3.3e-33 114.8 0.0 4.4e-33 114.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|452208162|ref|YP_007488284.1| - 2.4e-10 40.8 0.0 6.9e-05 22.9 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_23 PF13476.1 gi|452208162|ref|YP_007488284.1| - 5.6e-05 23.5 0.0 7.9e-05 23.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|452208162|ref|YP_007488284.1| - 0.00047 19.6 0.1 0.00087 18.7 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain NB-ARC PF00931.17 gi|452208162|ref|YP_007488284.1| - 0.0018 17.2 0.2 0.003 16.4 0.1 1.3 1 0 0 1 1 1 1 NB-ARC domain NACHT PF05729.7 gi|452208162|ref|YP_007488284.1| - 0.0047 16.6 0.1 0.007 16.0 0.1 1.2 1 0 0 1 1 1 1 NACHT domain MobB PF03205.9 gi|452208162|ref|YP_007488284.1| - 0.0061 16.2 0.2 0.01 15.5 0.1 1.4 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B ArgK PF03308.11 gi|452208162|ref|YP_007488284.1| - 0.0076 15.0 0.4 0.015 14.0 0.1 1.5 2 0 0 2 2 2 1 ArgK protein SMC_N PF02463.14 gi|452208162|ref|YP_007488284.1| - 0.0076 15.5 0.1 0.2 10.8 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_10 PF12846.2 gi|452208162|ref|YP_007488284.1| - 0.0091 15.4 0.2 0.53 9.6 0.1 2.1 2 0 0 2 2 2 1 AAA-like domain AAA_22 PF13401.1 gi|452208162|ref|YP_007488284.1| - 0.0095 16.0 0.1 0.26 11.4 0.0 2.1 2 0 0 2 2 2 1 AAA domain NTPase_1 PF03266.10 gi|452208162|ref|YP_007488284.1| - 0.0096 15.6 0.3 0.035 13.8 0.1 1.8 2 0 0 2 2 2 1 NTPase MMR_HSR1 PF01926.18 gi|452208162|ref|YP_007488284.1| - 0.011 15.7 0.0 0.017 15.0 0.0 1.6 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_25 PF13481.1 gi|452208162|ref|YP_007488284.1| - 0.013 14.8 0.0 0.036 13.4 0.0 1.9 1 1 0 1 1 1 0 AAA domain ATP-synt_ab PF00006.20 gi|452208162|ref|YP_007488284.1| - 0.014 14.9 0.6 0.016 14.6 0.4 1.2 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain Miro PF08477.8 gi|452208162|ref|YP_007488284.1| - 0.019 15.4 0.0 0.033 14.6 0.0 1.3 1 0 0 1 1 1 0 Miro-like protein AAA_16 PF13191.1 gi|452208162|ref|YP_007488284.1| - 0.021 14.7 0.1 0.051 13.5 0.0 1.6 2 0 0 2 2 2 0 AAA ATPase domain DUF258 PF03193.11 gi|452208162|ref|YP_007488284.1| - 0.022 13.9 0.0 0.035 13.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_17 PF13207.1 gi|452208162|ref|YP_007488284.1| - 0.032 15.0 0.1 0.066 14.0 0.1 1.6 1 0 0 1 1 1 0 AAA domain AAA PF00004.24 gi|452208162|ref|YP_007488284.1| - 0.034 14.3 0.0 0.053 13.7 0.0 1.6 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Arch_ATPase PF01637.13 gi|452208162|ref|YP_007488284.1| - 0.051 13.2 0.1 0.08 12.6 0.1 1.2 1 0 0 1 1 1 0 Archaeal ATPase AAA_14 PF13173.1 gi|452208162|ref|YP_007488284.1| - 0.063 13.1 0.0 0.11 12.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|452208162|ref|YP_007488284.1| - 0.083 12.4 0.1 0.25 10.9 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_15 PF13175.1 gi|452208162|ref|YP_007488284.1| - 0.083 11.9 0.0 0.11 11.4 0.0 1.1 1 0 0 1 1 1 0 AAA ATPase domain AAA_18 PF13238.1 gi|452208162|ref|YP_007488284.1| - 0.15 12.4 0.1 0.45 10.8 0.0 1.8 2 0 0 2 2 2 0 AAA domain Ribosomal_S17e PF00833.13 gi|452208163|ref|YP_007488285.1| - 6.8e-16 58.1 0.0 7.8e-16 57.9 0.0 1.0 1 0 0 1 1 1 1 Ribosomal S17 Semialdhyde_dh PF01118.19 gi|452208164|ref|YP_007488286.1| - 5.2e-32 110.6 0.0 1e-31 109.7 0.0 1.5 2 0 0 2 2 2 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.13 gi|452208164|ref|YP_007488286.1| - 1.6e-31 109.6 0.0 2.3e-31 109.1 0.0 1.2 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain DapB_N PF01113.15 gi|452208164|ref|YP_007488286.1| - 0.00029 20.7 0.0 0.00058 19.7 0.0 1.6 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus DXP_reductoisom PF02670.11 gi|452208164|ref|YP_007488286.1| - 0.0014 19.1 0.0 0.0026 18.3 0.0 1.4 1 0 0 1 1 1 1 1-deoxy-D-xylulose 5-phosphate reductoisomerase Saccharop_dh PF03435.13 gi|452208164|ref|YP_007488286.1| - 0.049 12.5 0.0 0.071 12.0 0.0 1.2 1 0 0 1 1 1 0 Saccharopine dehydrogenase Trypan_PARP PF05887.6 gi|452208165|ref|YP_007488287.1| - 0.01 15.6 4.1 0.013 15.2 2.8 1.3 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) CRA PF06589.6 gi|452208165|ref|YP_007488287.1| - 0.45 9.8 2.1 0.71 9.1 1.5 1.3 1 0 0 1 1 1 0 Circumsporozoite-related antigen (CRA) Cyclase PF04199.8 gi|452208166|ref|YP_007488288.1| - 4.4e-25 88.3 0.1 5.6e-25 87.9 0.0 1.1 1 0 0 1 1 1 1 Putative cyclase PhoU PF01895.14 gi|452208167|ref|YP_007488289.1| - 6.7e-31 106.5 8.1 1.2e-16 60.8 0.2 2.1 2 0 0 2 2 2 2 PhoU domain ATP-synt_D PF01813.12 gi|452208167|ref|YP_007488289.1| - 0.027 14.0 0.2 0.13 11.8 0.0 2.0 2 1 0 2 2 2 0 ATP synthase subunit D PNPase PF03726.9 gi|452208167|ref|YP_007488289.1| - 0.04 14.1 0.1 0.11 12.7 0.1 1.7 1 0 0 1 1 1 0 Polyribonucleotide nucleotidyltransferase, RNA binding domain ABC_tran PF00005.22 gi|452208168|ref|YP_007488290.1| - 3.7e-30 105.0 0.0 6.2e-30 104.2 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|452208168|ref|YP_007488290.1| - 6.8e-14 52.5 0.0 1.9e-11 44.4 0.0 2.1 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|452208168|ref|YP_007488290.1| - 1.4e-07 30.9 0.1 1.7e-06 27.4 0.1 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|452208168|ref|YP_007488290.1| - 0.00012 22.2 0.0 0.00037 20.6 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|452208168|ref|YP_007488290.1| - 0.00018 20.6 0.0 0.1 11.6 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.1 gi|452208168|ref|YP_007488290.1| - 0.0002 20.8 0.0 0.00052 19.5 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF258 PF03193.11 gi|452208168|ref|YP_007488290.1| - 0.00036 19.7 0.0 0.00093 18.4 0.0 1.7 1 1 0 1 1 1 1 Protein of unknown function, DUF258 AAA_16 PF13191.1 gi|452208168|ref|YP_007488290.1| - 0.00039 20.4 0.6 0.025 14.5 0.0 2.2 2 0 0 2 2 2 1 AAA ATPase domain AAA_23 PF13476.1 gi|452208168|ref|YP_007488290.1| - 0.0066 16.7 0.0 0.014 15.7 0.0 1.5 1 0 0 1 1 1 1 AAA domain DeoRC PF00455.17 gi|452208168|ref|YP_007488290.1| - 0.011 15.3 0.0 0.018 14.6 0.0 1.2 1 0 0 1 1 1 0 DeoR C terminal sensor domain AAA_25 PF13481.1 gi|452208168|ref|YP_007488290.1| - 0.015 14.7 0.1 0.061 12.7 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.1 gi|452208168|ref|YP_007488290.1| - 0.02 14.6 1.4 6.3 6.6 0.0 2.8 3 0 0 3 3 3 0 Part of AAA domain AAA_33 PF13671.1 gi|452208168|ref|YP_007488290.1| - 0.021 14.7 0.0 0.053 13.3 0.0 1.8 2 0 0 2 2 2 0 AAA domain ABC_ATPase PF09818.4 gi|452208168|ref|YP_007488290.1| - 0.025 13.1 0.1 0.37 9.3 0.0 2.0 2 0 0 2 2 2 0 Predicted ATPase of the ABC class AAA_10 PF12846.2 gi|452208168|ref|YP_007488290.1| - 0.027 13.9 0.2 0.15 11.4 0.0 2.0 1 1 1 2 2 2 0 AAA-like domain Adeno_IVa2 PF02456.10 gi|452208168|ref|YP_007488290.1| - 0.027 13.1 0.0 0.17 10.4 0.0 1.9 2 0 0 2 2 2 0 Adenovirus IVa2 protein AAA_17 PF13207.1 gi|452208168|ref|YP_007488290.1| - 0.044 14.5 0.7 0.15 12.8 0.4 2.2 1 1 0 1 1 1 0 AAA domain AAA PF00004.24 gi|452208168|ref|YP_007488290.1| - 0.13 12.4 0.2 2.1 8.5 0.0 2.7 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) RNA_helicase PF00910.17 gi|452208168|ref|YP_007488290.1| - 0.14 12.3 0.0 0.38 10.9 0.0 1.7 2 0 0 2 2 2 0 RNA helicase PhoU PF01895.14 gi|452208169|ref|YP_007488291.1| - 3.9e-21 75.2 8.7 2.5e-15 56.6 0.9 2.3 2 0 0 2 2 2 2 PhoU domain Antitoxin-MazE PF04014.13 gi|452208169|ref|YP_007488291.1| - 5.4e-11 41.9 0.0 1e-10 41.1 0.0 1.5 1 0 0 1 1 1 1 Antidote-toxin recognition MazE DUF1681 PF07933.9 gi|452208169|ref|YP_007488291.1| - 0.15 11.6 0.0 0.26 10.8 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1681) TrkA_N PF02254.13 gi|452208170|ref|YP_007488292.1| - 5.9e-05 23.0 0.1 7e-05 22.7 0.1 1.1 1 0 0 1 1 1 1 TrkA-N domain GMP_synt_C PF00958.17 gi|452208171|ref|YP_007488293.1| - 2.7e-29 100.7 0.1 5.4e-29 99.7 0.1 1.5 1 0 0 1 1 1 1 GMP synthase C terminal domain NAD_synthase PF02540.12 gi|452208171|ref|YP_007488293.1| - 1.5e-08 33.8 0.0 2.2e-05 23.4 0.0 2.2 2 0 0 2 2 2 2 NAD synthase tRNA_Me_trans PF03054.11 gi|452208171|ref|YP_007488293.1| - 8.3e-05 21.2 0.0 0.0061 15.1 0.0 2.1 2 0 0 2 2 2 2 tRNA methyl transferase Asn_synthase PF00733.16 gi|452208171|ref|YP_007488293.1| - 0.0002 20.9 0.1 0.0007 19.1 0.0 1.9 2 0 0 2 2 2 1 Asparagine synthase QueC PF06508.8 gi|452208171|ref|YP_007488293.1| - 0.00082 18.7 0.0 0.013 14.8 0.0 2.1 1 1 1 2 2 2 1 Queuosine biosynthesis protein QueC ThiI PF02568.9 gi|452208171|ref|YP_007488293.1| - 0.011 15.2 0.0 0.031 13.7 0.0 1.7 1 1 0 1 1 1 0 Thiamine biosynthesis protein (ThiI) PAPS_reduct PF01507.14 gi|452208171|ref|YP_007488293.1| - 0.095 12.5 0.0 0.15 11.8 0.0 1.4 1 0 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family CTP_synth_N PF06418.9 gi|452208172|ref|YP_007488294.1| - 2.5e-125 417.1 0.0 3.3e-125 416.7 0.0 1.1 1 0 0 1 1 1 1 CTP synthase N-terminus GATase PF00117.23 gi|452208172|ref|YP_007488294.1| - 1e-48 165.3 0.0 1.7e-48 164.6 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|452208172|ref|YP_007488294.1| - 4.9e-09 35.9 0.0 1.8e-08 34.1 0.0 1.8 2 0 0 2 2 2 1 Peptidase C26 CbiA PF01656.18 gi|452208172|ref|YP_007488294.1| - 1.8e-07 30.7 0.0 3.6e-07 29.8 0.0 1.4 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain TrkA_N PF02254.13 gi|452208173|ref|YP_007488295.1| - 5.8e-50 168.1 5.1 2.6e-25 88.6 0.6 2.4 2 0 0 2 2 2 2 TrkA-N domain TrkA_C PF02080.16 gi|452208173|ref|YP_007488295.1| - 3.3e-28 97.0 2.5 5.2e-15 54.8 0.0 3.8 4 0 0 4 4 3 2 TrkA-C domain NAD_binding_7 PF13241.1 gi|452208173|ref|YP_007488295.1| - 6.8e-12 45.5 1.2 2.2e-05 24.6 0.1 2.6 2 0 0 2 2 2 2 Putative NAD(P)-binding Shikimate_DH PF01488.15 gi|452208173|ref|YP_007488295.1| - 2e-07 31.1 0.6 0.035 14.2 0.0 3.1 2 2 1 3 3 3 2 Shikimate / quinate 5-dehydrogenase F420_oxidored PF03807.12 gi|452208173|ref|YP_007488295.1| - 2.1e-06 28.0 0.9 0.0099 16.2 0.0 3.5 3 0 0 3 3 3 2 NADP oxidoreductase coenzyme F420-dependent Saccharop_dh PF03435.13 gi|452208173|ref|YP_007488295.1| - 5.9e-06 25.5 1.1 0.019 13.9 0.1 2.2 2 0 0 2 2 2 2 Saccharopine dehydrogenase ThiF PF00899.16 gi|452208173|ref|YP_007488295.1| - 0.0001 22.1 0.5 0.63 9.8 0.1 2.9 2 0 0 2 2 2 2 ThiF family NAD_Gly3P_dh_N PF01210.18 gi|452208173|ref|YP_007488295.1| - 0.00023 20.9 0.0 0.029 14.1 0.0 2.4 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ADH_zinc_N PF00107.21 gi|452208173|ref|YP_007488295.1| - 0.00024 20.6 0.3 0.0054 16.2 0.0 2.8 2 0 0 2 2 2 1 Zinc-binding dehydrogenase 3HCDH_N PF02737.13 gi|452208173|ref|YP_007488295.1| - 0.00031 20.4 0.1 0.0093 15.6 0.1 2.3 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DAO PF01266.19 gi|452208173|ref|YP_007488295.1| - 0.00062 18.7 0.1 0.066 12.1 0.1 2.4 2 1 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|452208173|ref|YP_007488295.1| - 0.00073 18.6 0.0 1.1 8.2 0.0 2.4 2 0 0 2 2 2 2 FAD binding domain Pyr_redox_2 PF07992.9 gi|452208173|ref|YP_007488295.1| - 0.0017 18.2 0.1 2.1 8.1 0.0 2.3 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase UDPG_MGDP_dh_N PF03721.9 gi|452208173|ref|YP_007488295.1| - 0.0019 17.6 0.0 0.0063 15.9 0.0 1.9 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain HEM4 PF02602.10 gi|452208173|ref|YP_007488295.1| - 0.0022 17.2 0.1 0.0059 15.8 0.0 1.9 2 0 0 2 2 2 1 Uroporphyrinogen-III synthase HemD Pyr_redox PF00070.22 gi|452208173|ref|YP_007488295.1| - 0.0031 17.8 0.4 1.1 9.7 0.0 2.8 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase ApbA PF02558.11 gi|452208173|ref|YP_007488295.1| - 0.0055 16.1 0.0 0.055 12.9 0.0 2.3 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA GFO_IDH_MocA PF01408.17 gi|452208173|ref|YP_007488295.1| - 0.011 16.2 0.1 1.7 9.1 0.0 2.7 2 0 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold CPSase_L_chain PF00289.17 gi|452208173|ref|YP_007488295.1| - 0.017 15.2 1.2 3.9 7.6 0.0 3.0 3 0 0 3 3 3 0 Carbamoyl-phosphate synthase L chain, N-terminal domain 2-Hacid_dh_C PF02826.14 gi|452208173|ref|YP_007488295.1| - 0.024 13.7 0.0 0.65 9.1 0.0 2.4 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YflT PF11181.3 gi|452208173|ref|YP_007488295.1| - 0.17 12.0 2.9 1.6 8.8 0.1 3.3 2 1 1 3 3 3 0 Heat induced stress protein YflT Form_Nir_trans PF01226.12 gi|452208174|ref|YP_007488296.1| - 3.1e-53 180.2 13.5 3.8e-53 179.9 9.4 1.1 1 0 0 1 1 1 1 Formate/nitrite transporter Usp PF00582.21 gi|452208174|ref|YP_007488296.1| - 9.1e-15 55.0 8.3 5.7e-07 29.8 0.0 2.9 2 1 0 2 2 2 2 Universal stress protein family Pyr_redox PF00070.22 gi|452208174|ref|YP_007488296.1| - 0.011 16.1 0.3 0.9 9.9 0.0 2.5 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase TFIIB PF00382.14 gi|452208175|ref|YP_007488297.1| - 2.8e-33 113.5 2.1 9.6e-19 66.9 0.1 2.4 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|452208175|ref|YP_007488297.1| - 6.8e-10 38.1 1.8 1.2e-09 37.3 1.2 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding DZR PF12773.2 gi|452208175|ref|YP_007488297.1| - 0.01 15.6 1.3 0.046 13.5 0.6 2.1 2 0 0 2 2 2 0 Double zinc ribbon Prok-RING_1 PF14446.1 gi|452208175|ref|YP_007488297.1| - 0.021 14.5 1.3 0.068 12.9 0.7 2.0 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 zinc-ribbons_6 PF07191.7 gi|452208175|ref|YP_007488297.1| - 0.024 14.4 0.5 0.05 13.3 0.4 1.5 1 0 0 1 1 1 0 zinc-ribbons Cyclin_C PF02984.14 gi|452208175|ref|YP_007488297.1| - 0.05 13.5 0.2 4.8 7.1 0.0 2.4 2 1 0 2 2 2 0 Cyclin, C-terminal domain RB_B PF01857.15 gi|452208175|ref|YP_007488297.1| - 0.072 12.5 0.0 0.12 11.8 0.0 1.2 1 0 0 1 1 1 0 Retinoblastoma-associated protein B domain HTH_3 PF01381.17 gi|452208175|ref|YP_007488297.1| - 0.076 12.8 0.0 0.28 11.0 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix zf-IS66 PF13005.2 gi|452208175|ref|YP_007488297.1| - 5 7.1 6.5 14 5.7 3.0 2.8 2 1 0 2 2 2 0 zinc-finger binding domain of transposase IS66 FAD_binding_6 PF00970.19 gi|452208176|ref|YP_007488298.1| - 2.8e-13 49.8 0.0 3.7e-13 49.4 0.0 1.2 1 0 0 1 1 1 1 Oxidoreductase FAD-binding domain HCBP_related PF06594.6 gi|452208176|ref|YP_007488298.1| - 0.0054 16.3 0.1 2.6 7.7 0.0 2.4 2 0 0 2 2 2 2 Haemolysin-type calcium binding protein related domain FAD_binding_9 PF08021.6 gi|452208176|ref|YP_007488298.1| - 0.015 15.3 0.0 0.037 14.0 0.0 1.7 1 1 1 2 2 2 0 Siderophore-interacting FAD-binding domain POR_N PF01855.14 gi|452208177|ref|YP_007488299.1| - 3.1e-58 197.0 0.0 4.7e-58 196.4 0.0 1.3 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.13 gi|452208177|ref|YP_007488299.1| - 7.4e-40 136.6 0.3 1.6e-39 135.6 0.2 1.5 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_N PF02776.13 gi|452208177|ref|YP_007488299.1| - 4.3e-06 26.3 0.1 8.5e-06 25.3 0.0 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Transketolase_C PF02780.15 gi|452208177|ref|YP_007488299.1| - 0.046 13.6 0.1 0.13 12.1 0.0 1.7 1 0 0 1 1 1 0 Transketolase, C-terminal domain TPP_enzyme_C PF02775.16 gi|452208178|ref|YP_007488300.1| - 9.4e-32 109.6 0.4 1.5e-31 109.0 0.3 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.3 gi|452208178|ref|YP_007488300.1| - 7e-13 48.3 0.2 1.6e-12 47.1 0.1 1.6 1 0 0 1 1 1 1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal Isochorismatase PF00857.15 gi|452208179|ref|YP_007488301.1| - 1.6e-49 168.1 0.0 1.9e-49 167.9 0.0 1.0 1 0 0 1 1 1 1 Isochorismatase family tRNA-synt_2 PF00152.15 gi|452208180|ref|YP_007488302.1| - 2.5e-88 296.0 0.0 3.2e-88 295.7 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.20 gi|452208180|ref|YP_007488302.1| - 2.5e-15 56.1 0.1 4.1e-15 55.4 0.1 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.15 gi|452208180|ref|YP_007488302.1| - 0.0014 17.9 0.1 0.078 12.1 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class II core domain (F) Porphobil_deam PF01379.15 gi|452208182|ref|YP_007488304.1| - 4.8e-60 202.1 0.0 5.4e-49 166.0 0.0 2.3 2 0 0 2 2 2 2 Porphobilinogen deaminase, dipyromethane cofactor binding domain Porphobil_deamC PF03900.10 gi|452208182|ref|YP_007488304.1| - 3.7e-10 39.7 0.2 8.9e-10 38.5 0.1 1.6 1 0 0 1 1 1 1 Porphobilinogen deaminase, C-terminal domain TP_methylase PF00590.15 gi|452208183|ref|YP_007488305.1| - 1.8e-52 178.1 0.2 2.1e-52 177.8 0.1 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases HEM4 PF02602.10 gi|452208184|ref|YP_007488306.1| - 1.2e-37 129.3 4.9 1.5e-37 129.0 3.4 1.0 1 0 0 1 1 1 1 Uroporphyrinogen-III synthase HemD Rep_fac_C PF08542.6 gi|452208185|ref|YP_007488307.1| - 3.1e-09 36.6 0.0 5.5e-09 35.8 0.0 1.4 1 0 0 1 1 1 1 Replication factor C C-terminal domain AAA PF00004.24 gi|452208185|ref|YP_007488307.1| - 6.9e-09 36.0 0.0 1.5e-08 34.9 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DNA_pol3_delta2 PF13177.1 gi|452208185|ref|YP_007488307.1| - 7.8e-08 32.1 0.0 1.1e-07 31.6 0.0 1.3 1 0 0 1 1 1 1 DNA polymerase III, delta subunit AAA_22 PF13401.1 gi|452208185|ref|YP_007488307.1| - 5.2e-07 29.8 0.0 1.2e-06 28.6 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_14 PF13173.1 gi|452208185|ref|YP_007488307.1| - 1.7e-06 27.9 0.0 3.4e-06 26.9 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|452208185|ref|YP_007488307.1| - 3.7e-06 27.0 0.3 8.8e-05 22.5 0.0 2.6 2 2 0 2 2 2 1 AAA ATPase domain Sigma54_activat PF00158.21 gi|452208185|ref|YP_007488307.1| - 1.7e-05 24.3 0.0 7.8e-05 22.1 0.0 2.0 2 1 0 2 2 1 1 Sigma-54 interaction domain AAA_17 PF13207.1 gi|452208185|ref|YP_007488307.1| - 0.00034 21.4 0.0 0.00077 20.2 0.0 1.8 1 1 0 1 1 1 1 AAA domain Arch_ATPase PF01637.13 gi|452208185|ref|YP_007488307.1| - 0.0012 18.5 0.0 0.0021 17.7 0.0 1.4 1 0 0 1 1 1 1 Archaeal ATPase Zeta_toxin PF06414.7 gi|452208185|ref|YP_007488307.1| - 0.0017 17.4 0.1 0.0057 15.7 0.1 1.8 1 1 0 1 1 1 1 Zeta toxin AAA_24 PF13479.1 gi|452208185|ref|YP_007488307.1| - 0.0042 16.6 0.0 0.0061 16.1 0.0 1.2 1 0 0 1 1 1 1 AAA domain Sigma54_activ_2 PF14532.1 gi|452208185|ref|YP_007488307.1| - 0.01 15.8 0.0 0.073 13.1 0.0 2.0 2 0 0 2 2 2 0 Sigma-54 interaction domain Mg_chelatase PF01078.16 gi|452208185|ref|YP_007488307.1| - 0.014 14.5 0.0 0.023 13.8 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_10 PF12846.2 gi|452208185|ref|YP_007488307.1| - 0.016 14.6 0.0 0.12 11.8 0.0 2.0 1 1 0 1 1 1 0 AAA-like domain FtsK_SpoIIIE PF01580.13 gi|452208185|ref|YP_007488307.1| - 0.025 14.0 0.0 0.059 12.8 0.0 1.6 1 0 0 1 1 1 0 FtsK/SpoIIIE family Virul_Fac PF10139.4 gi|452208185|ref|YP_007488307.1| - 0.025 12.5 0.0 0.037 11.9 0.0 1.1 1 0 0 1 1 1 0 Putative bacterial virulence factor DUF815 PF05673.8 gi|452208185|ref|YP_007488307.1| - 0.032 13.1 0.0 0.067 12.1 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_33 PF13671.1 gi|452208185|ref|YP_007488307.1| - 0.04 13.7 0.0 0.077 12.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.12 gi|452208185|ref|YP_007488307.1| - 0.041 13.2 0.0 0.33 10.3 0.0 2.0 1 1 0 2 2 2 0 IstB-like ATP binding protein ABC_tran PF00005.22 gi|452208185|ref|YP_007488307.1| - 0.051 13.8 0.0 0.14 12.4 0.0 1.8 2 0 0 2 2 1 0 ABC transporter D123 PF07065.9 gi|452208185|ref|YP_007488307.1| - 0.072 12.1 0.0 0.11 11.5 0.0 1.2 1 0 0 1 1 1 0 D123 TIP49 PF06068.8 gi|452208185|ref|YP_007488307.1| - 0.083 11.5 0.0 1.1 7.8 0.0 2.0 2 0 0 2 2 2 0 TIP49 C-terminus AAA_19 PF13245.1 gi|452208185|ref|YP_007488307.1| - 0.091 12.5 0.0 0.29 10.8 0.0 1.9 1 0 0 1 1 1 0 Part of AAA domain T2SE PF00437.15 gi|452208185|ref|YP_007488307.1| - 0.099 11.5 0.0 0.2 10.5 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_28 PF13521.1 gi|452208185|ref|YP_007488307.1| - 0.099 12.5 0.5 0.35 10.8 0.0 2.2 2 1 0 2 2 2 0 AAA domain Rho_N PF07498.7 gi|452208185|ref|YP_007488307.1| - 0.12 12.2 0.5 0.41 10.4 0.0 2.1 3 0 0 3 3 2 0 Rho termination factor, N-terminal domain Miro PF08477.8 gi|452208185|ref|YP_007488307.1| - 0.13 12.7 0.0 0.24 11.9 0.0 1.6 1 1 0 1 1 1 0 Miro-like protein UPF0020 PF01170.13 gi|452208186|ref|YP_007488308.1| - 3.9e-26 91.7 0.0 5.4e-26 91.2 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_26 PF13659.1 gi|452208186|ref|YP_007488308.1| - 2.2e-11 43.7 0.4 2.2e-11 43.7 0.3 2.1 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|452208186|ref|YP_007488308.1| - 1.5e-06 28.6 0.0 6.9e-06 26.4 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|452208186|ref|YP_007488308.1| - 2.4e-05 23.9 0.0 3.5e-05 23.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|452208186|ref|YP_007488308.1| - 3.6e-05 24.2 0.5 7.8e-05 23.2 0.1 1.8 2 1 0 2 2 2 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|452208186|ref|YP_007488308.1| - 0.0022 17.4 0.0 0.0037 16.6 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 MTS PF05175.9 gi|452208186|ref|YP_007488308.1| - 0.0035 16.7 0.0 0.0056 16.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_15 PF09445.5 gi|452208186|ref|YP_007488308.1| - 0.0095 15.4 0.0 0.013 15.0 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase THUMP PF02926.12 gi|452208186|ref|YP_007488308.1| - 0.023 14.5 0.0 0.033 14.0 0.0 1.3 1 0 0 1 1 1 0 THUMP domain Methyltransf_25 PF13649.1 gi|452208186|ref|YP_007488308.1| - 0.028 14.7 0.0 0.067 13.5 0.0 1.7 1 0 0 1 1 1 0 Methyltransferase domain Ubie_methyltran PF01209.13 gi|452208186|ref|YP_007488308.1| - 0.037 13.1 0.0 0.056 12.5 0.0 1.2 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.1 gi|452208186|ref|YP_007488308.1| - 0.064 12.9 0.0 0.12 12.1 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain N6_Mtase PF02384.11 gi|452208186|ref|YP_007488308.1| - 0.083 11.9 0.0 0.1 11.6 0.0 1.1 1 0 0 1 1 1 0 N-6 DNA Methylase SH3_4 PF06347.8 gi|452208187|ref|YP_007488309.1| - 0.15 11.6 0.3 0.53 9.8 0.0 1.9 2 0 0 2 2 2 0 Bacterial SH3 domain DUF2237 PF09996.4 gi|452208188|ref|YP_007488310.1| - 1.2e-47 160.2 0.1 1.8e-47 159.6 0.0 1.3 1 1 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2237) TusA PF01206.12 gi|452208189|ref|YP_007488311.1| - 2.4e-11 43.0 0.0 2.7e-11 42.9 0.0 1.1 1 0 0 1 1 1 1 Sulfurtransferase TusA Pyr_redox_2 PF07992.9 gi|452208190|ref|YP_007488312.1| - 3.9e-15 56.2 0.0 5.5e-15 55.7 0.0 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.1 gi|452208190|ref|YP_007488312.1| - 0.0011 18.8 0.2 0.19 11.4 0.1 2.4 2 0 0 2 2 2 2 FAD-NAD(P)-binding DUF1641 PF07849.6 gi|452208191|ref|YP_007488313.1| - 4.7e-14 51.7 0.0 9.6e-14 50.7 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF1641) GldM_N PF12081.3 gi|452208191|ref|YP_007488313.1| - 0.1 12.1 0.1 0.19 11.2 0.0 1.4 1 0 0 1 1 1 0 GldM N-terminal domain KorB PF08535.5 gi|452208191|ref|YP_007488313.1| - 0.13 12.4 0.4 2.7 8.2 0.1 2.7 2 0 0 2 2 2 0 KorB domain Mating_N PF12731.2 gi|452208191|ref|YP_007488313.1| - 0.17 11.8 0.7 1.4 8.8 0.0 2.2 2 0 0 2 2 2 0 Mating-type protein beta 1 PAS_9 PF13426.1 gi|452208192|ref|YP_007488314.1| - 5.8e-36 123.0 0.4 2.5e-17 63.1 0.0 3.2 3 0 0 3 3 3 2 PAS domain PAS_4 PF08448.5 gi|452208192|ref|YP_007488314.1| - 1.6e-34 118.2 17.7 4.1e-14 52.5 0.4 4.3 5 0 0 5 5 5 3 PAS fold PAS PF00989.19 gi|452208192|ref|YP_007488314.1| - 1.1e-23 83.1 2.3 1.3e-10 41.0 0.1 3.5 3 0 0 3 3 3 2 PAS fold Response_reg PF00072.19 gi|452208192|ref|YP_007488314.1| - 9.2e-19 67.5 0.0 2.6e-18 66.0 0.0 1.8 1 0 0 1 1 1 1 Response regulator receiver domain HATPase_c PF02518.21 gi|452208192|ref|YP_007488314.1| - 2.5e-18 65.7 0.1 2.5e-17 62.5 0.0 2.7 3 0 0 3 3 3 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.1 gi|452208192|ref|YP_007488314.1| - 4.1e-16 58.1 0.0 2.8e-07 30.1 0.0 3.9 3 0 0 3 3 3 2 PAS domain GAF PF01590.21 gi|452208192|ref|YP_007488314.1| - 3e-15 56.6 0.7 9.7e-07 29.0 0.5 2.6 2 0 0 2 2 2 2 GAF domain GAF_3 PF13492.1 gi|452208192|ref|YP_007488314.1| - 3.5e-15 56.2 0.1 2.3e-07 30.9 0.1 2.8 2 0 0 2 2 2 2 GAF domain PAS_3 PF08447.6 gi|452208192|ref|YP_007488314.1| - 7.3e-13 48.4 1.2 7.5e-08 32.3 0.1 3.1 3 0 0 3 3 2 2 PAS fold HisKA PF00512.20 gi|452208192|ref|YP_007488314.1| - 2.7e-11 43.2 0.5 2.7e-11 43.2 0.3 3.3 3 0 0 3 3 2 1 His Kinase A (phospho-acceptor) domain GAF_2 PF13185.1 gi|452208192|ref|YP_007488314.1| - 3e-09 37.5 6.7 0.0023 18.4 0.2 4.6 3 1 0 3 3 3 2 GAF domain PAS_7 PF12860.2 gi|452208192|ref|YP_007488314.1| - 6.1e-05 23.0 3.6 0.13 12.3 0.1 4.4 3 2 0 3 3 3 2 PAS fold PAS_11 PF14598.1 gi|452208192|ref|YP_007488314.1| - 0.00054 19.9 0.0 0.32 10.9 0.0 2.6 2 0 0 2 2 2 2 PAS domain HATPase_c_2 PF13581.1 gi|452208192|ref|YP_007488314.1| - 0.00087 19.0 1.2 0.0027 17.4 0.0 2.5 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain Acetyltransf_1 PF00583.19 gi|452208193|ref|YP_007488315.1| - 1.1e-17 63.8 0.1 2.1e-17 62.8 0.1 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|452208193|ref|YP_007488315.1| - 5.6e-12 45.8 0.1 7.1e-12 45.4 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|452208193|ref|YP_007488315.1| - 2.2e-06 27.7 0.0 4.3e-06 26.7 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|452208193|ref|YP_007488315.1| - 1.1e-05 25.6 0.1 1.7e-05 25.0 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|452208193|ref|YP_007488315.1| - 6.1e-05 23.0 0.0 0.00012 22.1 0.0 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|452208193|ref|YP_007488315.1| - 0.00014 21.7 0.0 0.00021 21.2 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|452208193|ref|YP_007488315.1| - 0.0032 17.3 0.0 0.0058 16.4 0.0 1.4 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase DUF2156 PF09924.4 gi|452208193|ref|YP_007488315.1| - 0.0034 16.2 0.2 0.0046 15.8 0.2 1.3 1 1 0 1 1 1 1 Uncharacterized conserved protein (DUF2156) Toprim_4 PF13662.1 gi|452208193|ref|YP_007488315.1| - 0.057 13.4 0.4 0.29 11.1 0.1 2.0 1 1 0 2 2 2 0 Toprim domain Acetyltransf_6 PF13480.1 gi|452208193|ref|YP_007488315.1| - 0.12 12.3 1.2 0.24 11.3 0.8 1.5 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain FAD_binding_7 PF03441.9 gi|452208194|ref|YP_007488316.1| - 1.4e-83 280.3 0.2 2e-83 279.8 0.1 1.2 1 0 0 1 1 1 1 FAD binding domain of DNA photolyase DNA_photolyase PF00875.13 gi|452208194|ref|YP_007488316.1| - 6.7e-32 110.5 0.1 1e-31 109.8 0.1 1.3 1 0 0 1 1 1 1 DNA photolyase Usp PF00582.21 gi|452208194|ref|YP_007488316.1| - 0.0023 18.1 0.4 0.0099 16.0 0.0 2.1 1 1 1 2 2 2 1 Universal stress protein family KH_1 PF00013.24 gi|452208196|ref|YP_007488318.1| - 1.2e-14 53.6 3.1 7e-08 31.9 0.6 2.3 2 0 0 2 2 2 2 KH domain KH_3 PF13014.1 gi|452208196|ref|YP_007488318.1| - 3.7e-06 26.4 0.6 0.0011 18.5 0.1 2.4 2 0 0 2 2 2 2 KH domain KH_2 PF07650.12 gi|452208196|ref|YP_007488318.1| - 0.0001 21.7 0.4 0.0084 15.6 0.0 2.4 2 0 0 2 2 2 1 KH domain KH_4 PF13083.1 gi|452208196|ref|YP_007488318.1| - 0.026 14.1 1.6 5.8 6.6 0.2 3.0 2 1 1 3 3 3 0 KH domain Cpn60_TCP1 PF00118.19 gi|452208197|ref|YP_007488319.1| - 1.8e-162 541.3 8.4 2.1e-162 541.1 5.8 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family SNAP PF14938.1 gi|452208197|ref|YP_007488319.1| - 0.071 12.2 0.0 0.12 11.4 0.0 1.3 1 0 0 1 1 1 0 Soluble NSF attachment protein, SNAP Aminotran_1_2 PF00155.16 gi|452208198|ref|YP_007488320.1| - 3.1e-61 207.3 0.0 3.5e-61 207.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|452208198|ref|YP_007488320.1| - 4.9e-13 48.8 0.1 9.8e-13 47.8 0.1 1.4 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.16 gi|452208198|ref|YP_007488320.1| - 1.7e-10 40.5 0.1 5.9e-10 38.7 0.0 1.8 2 0 0 2 2 2 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.15 gi|452208198|ref|YP_007488320.1| - 1.5e-06 26.7 0.0 2.3e-06 26.1 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.14 gi|452208198|ref|YP_007488320.1| - 3.3e-05 22.8 0.0 5.8e-05 21.9 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V NMT1_2 PF13379.1 gi|452208199|ref|YP_007488321.1| - 1.6e-31 109.5 0.3 2e-31 109.2 0.2 1.0 1 0 0 1 1 1 1 NMT1-like family NMT1 PF09084.6 gi|452208199|ref|YP_007488321.1| - 7.5e-07 28.9 0.1 5.4e-06 26.1 0.1 1.9 1 1 0 1 1 1 1 NMT1/THI5 like Phosphonate-bd PF12974.2 gi|452208199|ref|YP_007488321.1| - 3.1e-06 26.7 0.1 6.7e-06 25.6 0.1 1.5 1 1 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein OpuAC PF04069.7 gi|452208199|ref|YP_007488321.1| - 0.011 15.1 0.2 1.7 7.9 0.0 2.4 2 0 0 2 2 2 0 Substrate binding domain of ABC-type glycine betaine transport system BPD_transp_1 PF00528.17 gi|452208200|ref|YP_007488322.1| - 1.7e-18 66.8 9.7 2.7e-18 66.1 6.7 1.3 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component Oleosin PF01277.12 gi|452208200|ref|YP_007488322.1| - 1.4 8.4 5.8 0.25 10.9 1.2 1.8 2 0 0 2 2 2 0 Oleosin Gly-zipper_OmpA PF13436.1 gi|452208200|ref|YP_007488322.1| - 2.2 7.9 6.9 0.15 11.7 1.1 1.7 2 0 0 2 2 2 0 Glycine-zipper containing OmpA-like membrane domain ABC_tran PF00005.22 gi|452208201|ref|YP_007488323.1| - 1.5e-31 109.5 0.0 2.1e-31 109.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|452208201|ref|YP_007488323.1| - 4.9e-08 33.2 0.0 0.0016 18.4 0.0 2.1 1 1 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|452208201|ref|YP_007488323.1| - 1.1e-06 28.7 0.0 2e-06 27.9 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.24 gi|452208201|ref|YP_007488323.1| - 3.9e-05 23.8 0.0 0.0003 21.0 0.0 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.1 gi|452208201|ref|YP_007488323.1| - 0.0015 18.5 0.1 0.047 13.6 0.0 2.4 2 0 0 2 2 2 1 AAA domain DUF258 PF03193.11 gi|452208201|ref|YP_007488323.1| - 0.0025 17.0 0.0 0.0044 16.2 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_23 PF13476.1 gi|452208201|ref|YP_007488323.1| - 0.0051 17.1 0.0 0.0077 16.5 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_5 PF07728.9 gi|452208201|ref|YP_007488323.1| - 0.0061 16.2 0.0 0.012 15.3 0.0 1.5 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) SMC_N PF02463.14 gi|452208201|ref|YP_007488323.1| - 0.0073 15.5 0.0 3.1 6.9 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|452208201|ref|YP_007488323.1| - 0.0081 16.3 0.0 0.032 14.3 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|452208201|ref|YP_007488323.1| - 0.0088 15.4 0.0 0.094 12.0 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|452208201|ref|YP_007488323.1| - 0.0091 16.8 0.1 0.035 14.9 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|452208201|ref|YP_007488323.1| - 0.012 15.9 0.0 0.051 13.8 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.1 gi|452208201|ref|YP_007488323.1| - 0.014 15.2 0.5 0.056 13.3 0.0 2.1 2 1 0 2 2 2 0 AAA domain AAA_29 PF13555.1 gi|452208201|ref|YP_007488323.1| - 0.016 14.7 0.0 0.035 13.6 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain Arch_ATPase PF01637.13 gi|452208201|ref|YP_007488323.1| - 0.016 14.9 0.0 0.052 13.2 0.0 1.7 2 0 0 2 2 2 0 Archaeal ATPase NB-ARC PF00931.17 gi|452208201|ref|YP_007488323.1| - 0.021 13.6 0.2 0.047 12.5 0.0 1.6 2 0 0 2 2 2 0 NB-ARC domain NACHT PF05729.7 gi|452208201|ref|YP_007488323.1| - 0.023 14.3 0.0 0.043 13.4 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_19 PF13245.1 gi|452208201|ref|YP_007488323.1| - 0.026 14.2 0.0 0.19 11.4 0.0 2.2 2 0 0 2 2 2 0 Part of AAA domain AAA_30 PF13604.1 gi|452208201|ref|YP_007488323.1| - 0.03 13.9 0.0 0.3 10.6 0.0 2.1 2 0 0 2 2 2 0 AAA domain PduV-EutP PF10662.4 gi|452208201|ref|YP_007488323.1| - 0.032 13.7 0.0 0.056 12.9 0.0 1.3 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation AAA_15 PF13175.1 gi|452208201|ref|YP_007488323.1| - 0.045 12.7 0.0 3 6.7 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain SbcCD_C PF13558.1 gi|452208201|ref|YP_007488323.1| - 0.053 13.4 0.3 0.22 11.4 0.2 2.0 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_24 PF13479.1 gi|452208201|ref|YP_007488323.1| - 0.065 12.8 0.1 1.6 8.2 0.0 2.1 2 0 0 2 2 2 0 AAA domain Rad17 PF03215.10 gi|452208201|ref|YP_007488323.1| - 0.07 11.8 0.0 0.088 11.4 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein UPF0079 PF02367.12 gi|452208201|ref|YP_007488323.1| - 0.074 12.6 0.0 0.14 11.7 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_14 PF13173.1 gi|452208201|ref|YP_007488323.1| - 0.077 12.8 0.0 0.24 11.3 0.0 1.8 2 0 0 2 2 2 0 AAA domain MobB PF03205.9 gi|452208201|ref|YP_007488323.1| - 0.082 12.6 0.1 0.22 11.2 0.0 1.7 2 0 0 2 2 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_10 PF12846.2 gi|452208201|ref|YP_007488323.1| - 0.086 12.2 0.0 0.7 9.2 0.0 2.0 2 0 0 2 2 2 0 AAA-like domain RuvB_N PF05496.7 gi|452208201|ref|YP_007488323.1| - 0.093 11.7 0.0 0.31 10.0 0.0 1.7 2 0 0 2 2 2 0 Holliday junction DNA helicase ruvB N-terminus IstB_IS21 PF01695.12 gi|452208201|ref|YP_007488323.1| - 0.12 11.8 0.0 0.24 10.7 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein RNA_helicase PF00910.17 gi|452208201|ref|YP_007488323.1| - 0.17 12.0 0.0 0.29 11.3 0.0 1.4 1 0 0 1 1 1 0 RNA helicase ABC_ATPase PF09818.4 gi|452208201|ref|YP_007488323.1| - 0.17 10.4 0.2 0.53 8.8 0.0 1.8 2 1 0 2 2 2 0 Predicted ATPase of the ABC class SRPRB PF09439.5 gi|452208201|ref|YP_007488323.1| - 0.17 11.0 0.0 0.6 9.3 0.0 1.8 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit ATP-synt_ab PF00006.20 gi|452208201|ref|YP_007488323.1| - 0.19 11.2 0.3 0.25 10.7 0.2 1.5 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain Vac_Fusion PF02346.11 gi|452208202|ref|YP_007488324.1| - 0.00018 20.8 0.0 0.00021 20.6 0.0 1.2 1 0 0 1 1 1 1 Chordopoxvirus fusion protein Glutaredoxin2_C PF04399.8 gi|452208202|ref|YP_007488324.1| - 0.081 12.5 0.1 0.085 12.4 0.0 1.0 1 0 0 1 1 1 0 Glutaredoxin 2, C terminal domain DivIVA PF05103.8 gi|452208202|ref|YP_007488324.1| - 0.12 12.4 0.1 0.13 12.3 0.1 1.0 1 0 0 1 1 1 0 DivIVA protein DUF4407 PF14362.1 gi|452208202|ref|YP_007488324.1| - 0.22 10.4 0.9 0.24 10.3 0.6 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) Glyco_hydro_2 PF00703.16 gi|452208203|ref|YP_007488325.1| - 0.2 12.1 4.9 0.61 10.5 1.6 3.1 2 1 1 3 3 3 0 Glycosyl hydrolases family 2 DUF1034 PF06280.7 gi|452208203|ref|YP_007488325.1| - 1.1 9.6 5.5 32 4.9 0.6 3.9 4 0 0 4 4 4 0 Fn3-like domain (DUF1034) UCR_Fe-S_N PF10399.4 gi|452208204|ref|YP_007488326.1| - 0.044 12.9 0.3 0.083 12.0 0.2 1.5 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal FliT PF05400.8 gi|452208204|ref|YP_007488326.1| - 0.083 13.3 2.1 0.14 12.5 1.5 1.4 1 0 0 1 1 1 0 Flagellar protein FliT TAT_signal PF10518.4 gi|452208204|ref|YP_007488326.1| - 0.48 10.5 3.3 1.1 9.4 2.3 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence HTH_24 PF13412.1 gi|452208205|ref|YP_007488327.1| - 0.0019 17.5 0.1 0.0026 17.0 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|452208205|ref|YP_007488327.1| - 0.0066 16.2 0.0 0.03 14.1 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|452208205|ref|YP_007488327.1| - 0.11 12.1 0.0 0.18 11.5 0.0 1.3 1 0 0 1 1 1 0 MarR family SLH PF00395.15 gi|452208205|ref|YP_007488327.1| - 0.13 12.0 0.0 0.24 11.1 0.0 1.4 1 0 0 1 1 1 0 S-layer homology domain DUF192 PF02643.10 gi|452208207|ref|YP_007488329.1| - 3.1e-24 84.7 0.0 3.9e-24 84.4 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized ACR, COG1430 HATPase_c PF02518.21 gi|452208208|ref|YP_007488330.1| - 6.1e-22 77.4 0.1 1e-21 76.6 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.6 gi|452208208|ref|YP_007488330.1| - 6.2e-17 61.4 0.0 1.5e-16 60.2 0.0 1.6 1 0 0 1 1 1 1 PAS fold PAS PF00989.19 gi|452208208|ref|YP_007488330.1| - 6e-15 55.0 0.0 1.2e-14 54.0 0.0 1.6 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.1 gi|452208208|ref|YP_007488330.1| - 4.9e-14 52.5 0.0 1.6e-13 50.9 0.0 1.9 2 0 0 2 2 2 1 PAS domain PAS_4 PF08448.5 gi|452208208|ref|YP_007488330.1| - 1.9e-13 50.4 1.6 3e-13 49.7 0.4 1.9 2 0 0 2 2 2 1 PAS fold PAS_8 PF13188.1 gi|452208208|ref|YP_007488330.1| - 8.9e-09 34.8 0.0 2.5e-08 33.4 0.0 1.8 1 0 0 1 1 1 1 PAS domain HATPase_c_2 PF13581.1 gi|452208208|ref|YP_007488330.1| - 9.2e-08 31.9 0.0 5.3e-07 29.4 0.0 2.1 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain PAS_11 PF14598.1 gi|452208208|ref|YP_007488330.1| - 1.5e-06 28.1 0.0 3.8e-06 26.8 0.0 1.8 1 1 0 1 1 1 1 PAS domain HATPase_c_5 PF14501.1 gi|452208208|ref|YP_007488330.1| - 0.00013 21.5 0.0 0.00027 20.5 0.0 1.5 1 0 0 1 1 1 1 GHKL domain HisKA PF00512.20 gi|452208208|ref|YP_007488330.1| - 0.00051 19.9 0.3 0.0012 18.8 0.2 1.6 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_7 PF12860.2 gi|452208208|ref|YP_007488330.1| - 0.0055 16.6 0.2 0.064 13.2 0.0 2.7 2 2 1 3 3 3 1 PAS fold SPOB_a PF14689.1 gi|452208208|ref|YP_007488330.1| - 0.012 15.1 0.1 0.029 13.9 0.1 1.6 1 0 0 1 1 1 0 Sensor_kinase_SpoOB-type, alpha-helical domain Mob_Pre PF01076.14 gi|452208208|ref|YP_007488330.1| - 0.022 14.3 0.0 1.3 8.6 0.0 2.2 2 0 0 2 2 2 0 Plasmid recombination enzyme Peptidase_S8 PF00082.17 gi|452208209|ref|YP_007488331.1| - 1.3e-47 162.2 7.1 1.4e-47 162.1 4.0 1.7 2 0 0 2 2 2 1 Subtilase family CarboxypepD_reg PF13620.1 gi|452208209|ref|YP_007488331.1| - 7.1e-07 29.1 9.9 0.0032 17.4 1.0 4.7 3 1 0 3 3 3 2 Carboxypeptidase regulatory-like domain HTH_20 PF12840.2 gi|452208211|ref|YP_007488333.1| - 0.0098 15.6 0.4 0.014 15.1 0.3 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|452208211|ref|YP_007488333.1| - 0.068 12.7 0.2 0.1 12.1 0.1 1.2 1 0 0 1 1 1 0 IclR helix-turn-helix domain Glycos_transf_2 PF00535.21 gi|452208212|ref|YP_007488334.1| - 1.2e-31 109.6 0.1 2.2e-31 108.8 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|452208212|ref|YP_007488334.1| - 3.5e-28 98.9 0.3 4.2e-28 98.7 0.2 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|452208212|ref|YP_007488334.1| - 5e-17 61.8 0.0 2.2e-16 59.8 0.0 1.7 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|452208212|ref|YP_007488334.1| - 9e-13 48.3 0.0 1.2e-12 47.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.1 gi|452208212|ref|YP_007488334.1| - 0.00012 21.3 0.0 0.00029 20.1 0.0 1.6 2 0 0 2 2 2 1 Glycosyl transferase family 21 Glyco_tranf_2_4 PF13704.1 gi|452208212|ref|YP_007488334.1| - 0.00059 20.0 0.3 0.0012 19.1 0.2 1.6 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_transf_64 PF09258.5 gi|452208212|ref|YP_007488334.1| - 0.015 14.5 0.0 0.02 14.0 0.0 1.1 1 0 0 1 1 1 0 Glycosyl transferase family 64 domain DUF3368 PF11848.3 gi|452208213|ref|YP_007488335.1| - 1.8e-05 24.1 0.0 3.4e-05 23.3 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF3368) UPF0175 PF03683.8 gi|452208214|ref|YP_007488336.1| - 1.1e-25 88.9 0.2 1.2e-25 88.8 0.1 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0175) SelB-wing_3 PF09107.6 gi|452208214|ref|YP_007488336.1| - 0.11 11.9 0.2 0.21 11.0 0.1 1.6 1 1 0 1 1 1 0 Elongation factor SelB, winged helix Sulfatase PF00884.18 gi|452208215|ref|YP_007488337.1| - 2.2e-31 109.1 0.0 3.3e-31 108.6 0.0 1.3 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.17 gi|452208215|ref|YP_007488337.1| - 9.3e-11 41.6 4.2 1.6e-09 37.6 2.9 2.1 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase DUF229 PF02995.12 gi|452208215|ref|YP_007488337.1| - 0.0023 16.4 0.0 0.011 14.2 0.0 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF229) DUF501 PF04417.7 gi|452208215|ref|YP_007488337.1| - 0.1 12.4 0.0 0.31 10.8 0.0 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF501) DUF563 PF04577.9 gi|452208216|ref|YP_007488338.1| - 8e-38 130.4 0.0 1e-37 130.0 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF563) Polysacc_synt PF01943.12 gi|452208219|ref|YP_007488341.1| - 2e-28 99.4 15.6 2e-28 99.4 10.8 2.1 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_3 PF13440.1 gi|452208219|ref|YP_007488341.1| - 2.7e-21 76.1 33.5 2.7e-21 76.1 23.2 3.0 2 1 0 3 3 3 2 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.1 gi|452208219|ref|YP_007488341.1| - 3.7e-19 68.9 12.8 3.7e-19 68.9 8.9 4.4 2 1 1 3 3 3 1 Polysaccharide biosynthesis C-terminal domain MVIN PF03023.9 gi|452208219|ref|YP_007488341.1| - 1.1e-11 43.8 11.7 1.1e-11 43.8 8.1 2.1 1 1 1 2 2 2 1 MviN-like protein DUF3180 PF11377.3 gi|452208220|ref|YP_007488342.1| - 0.045 13.6 6.2 0.051 13.4 4.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3180) DUF1469 PF07332.6 gi|452208220|ref|YP_007488342.1| - 2.6 7.7 9.2 2.8 7.6 6.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) Glycos_transf_2 PF00535.21 gi|452208221|ref|YP_007488343.1| - 9.3e-25 87.2 0.0 1.3e-24 86.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|452208221|ref|YP_007488343.1| - 2.4e-14 53.7 3.1 3.7e-14 53.0 2.1 1.4 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|452208221|ref|YP_007488343.1| - 2e-06 27.0 0.0 4e-06 26.1 0.0 1.5 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|452208221|ref|YP_007488343.1| - 3.1e-06 27.0 0.8 9.3e-06 25.4 0.5 1.8 1 1 0 1 1 1 1 Glycosyl transferase family group 2 Antitoxin-MazE PF04014.13 gi|452208222|ref|YP_007488344.1| - 2.1e-06 27.2 0.1 3e-06 26.8 0.1 1.3 1 0 0 1 1 1 1 Antidote-toxin recognition MazE PIN PF01850.16 gi|452208223|ref|YP_007488345.1| - 9.3e-11 42.1 0.5 1.1e-10 41.8 0.3 1.0 1 0 0 1 1 1 1 PIN domain PIN_3 PF13470.1 gi|452208223|ref|YP_007488345.1| - 0.021 15.4 0.2 0.029 15.0 0.1 1.3 1 1 0 1 1 1 0 PIN domain Plasmid_stabil PF05016.9 gi|452208224|ref|YP_007488346.1| - 0.00037 20.8 0.2 0.00044 20.5 0.2 1.2 1 0 0 1 1 1 1 Plasmid stabilisation system protein DUF217 PF02697.9 gi|452208225|ref|YP_007488347.1| - 7.7e-05 22.8 0.0 9e-05 22.6 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized ACR, COG1753 Lge1 PF11488.3 gi|452208225|ref|YP_007488347.1| - 0.2 11.8 1.5 0.24 11.5 1.0 1.1 1 0 0 1 1 1 0 Transcriptional regulatory protein LGE1 Enkurin PF13864.1 gi|452208225|ref|YP_007488347.1| - 0.27 11.4 2.3 0.32 11.2 1.6 1.1 1 0 0 1 1 1 0 Calmodulin-binding VASP_tetra PF08776.6 gi|452208225|ref|YP_007488347.1| - 0.35 10.2 2.7 1.3 8.3 1.9 2.0 1 1 0 1 1 1 0 VASP tetramerisation domain Trypan_PARP PF05887.6 gi|452208227|ref|YP_007488349.1| - 3.1e-05 23.8 14.5 3.1e-05 23.8 10.0 2.7 3 0 0 3 3 3 1 Procyclic acidic repetitive protein (PARP) Neisseria_TspB PF05616.8 gi|452208227|ref|YP_007488349.1| - 0.55 8.5 8.9 0.91 7.8 6.1 1.2 1 0 0 1 1 1 0 Neisseria meningitidis TspB protein RGP PF03214.8 gi|452208228|ref|YP_007488350.1| - 3.4e-17 62.2 0.0 4.8e-17 61.7 0.0 1.2 1 0 0 1 1 1 1 Reversibly glycosylated polypeptide Glyco_tranf_2_3 PF13641.1 gi|452208228|ref|YP_007488350.1| - 0.0017 18.2 8.2 0.003 17.3 3.5 2.7 2 1 0 2 2 2 1 Glycosyltransferase like family 2 SBP_bac_11 PF13531.1 gi|452208229|ref|YP_007488351.1| - 3.6e-10 39.8 0.8 2.9e-09 36.9 0.5 2.0 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.1 gi|452208229|ref|YP_007488351.1| - 1.8e-09 37.7 1.3 3.7e-09 36.7 0.9 1.4 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|452208229|ref|YP_007488351.1| - 2.5e-08 34.0 2.6 1e-07 32.0 1.8 1.8 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.1 gi|452208229|ref|YP_007488351.1| - 1.2e-06 28.0 0.0 8.1e-06 25.3 0.0 1.9 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_3 PF00497.15 gi|452208229|ref|YP_007488351.1| - 0.009 15.2 0.1 0.014 14.6 0.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 PMT_2 PF13231.1 gi|452208230|ref|YP_007488352.1| - 2.7e-10 40.3 11.8 2.7e-10 40.3 8.2 2.9 4 0 0 4 4 4 1 Dolichyl-phosphate-mannose-protein mannosyltransferase Glyco_transf_22 PF03901.12 gi|452208230|ref|YP_007488352.1| - 0.078 11.9 0.5 0.17 10.8 0.3 1.5 1 0 0 1 1 1 0 Alg9-like mannosyltransferase family Syndecan PF01034.15 gi|452208230|ref|YP_007488352.1| - 0.35 10.5 1.2 1.7 8.3 0.1 2.7 2 0 0 2 2 2 0 Syndecan domain ATPase_gene1 PF09527.5 gi|452208231|ref|YP_007488353.1| - 0.6 9.9 10.6 0.18 11.6 1.3 2.1 2 0 0 2 2 2 0 Putative F0F1-ATPase subunit (ATPase_gene1) Glycos_transf_2 PF00535.21 gi|452208232|ref|YP_007488354.1| - 2.2e-21 76.2 0.0 2.8e-21 75.9 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|452208232|ref|YP_007488354.1| - 1e-08 35.2 0.2 1.3e-08 34.8 0.2 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 GMC_oxred_C PF05199.8 gi|452208233|ref|YP_007488355.1| - 8.8e-20 71.4 0.4 2.1e-19 70.2 0.3 1.7 1 1 0 1 1 1 1 GMC oxidoreductase GMC_oxred_N PF00732.14 gi|452208233|ref|YP_007488355.1| - 1.8e-15 56.9 0.0 3.4e-15 55.9 0.0 1.5 1 1 0 1 1 1 1 GMC oxidoreductase DAO PF01266.19 gi|452208233|ref|YP_007488355.1| - 1.6e-09 37.1 1.6 6.1e-05 22.0 0.3 3.3 2 1 1 3 3 3 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|452208233|ref|YP_007488355.1| - 2e-07 30.1 1.3 2.2e-05 23.5 0.0 2.2 2 0 0 2 2 2 2 FAD binding domain FAD_binding_3 PF01494.14 gi|452208233|ref|YP_007488355.1| - 3.9e-06 26.1 0.7 0.014 14.4 0.0 2.1 2 0 0 2 2 2 2 FAD binding domain Pyr_redox_2 PF07992.9 gi|452208233|ref|YP_007488355.1| - 3.8e-05 23.6 0.0 0.056 13.3 0.0 2.3 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|452208233|ref|YP_007488355.1| - 0.00016 20.2 0.5 0.048 12.1 0.1 2.1 2 0 0 2 2 2 2 HI0933-like protein NAD_binding_8 PF13450.1 gi|452208233|ref|YP_007488355.1| - 0.00048 20.0 0.3 0.002 18.0 0.1 2.2 2 0 0 2 2 1 1 NAD(P)-binding Rossmann-like domain Lycopene_cycl PF05834.7 gi|452208233|ref|YP_007488355.1| - 0.0012 17.7 0.4 0.0022 16.9 0.3 1.4 1 0 0 1 1 1 1 Lycopene cyclase protein NAD_binding_9 PF13454.1 gi|452208233|ref|YP_007488355.1| - 0.0023 17.7 1.4 0.16 11.7 0.0 2.3 2 0 0 2 2 2 1 FAD-NAD(P)-binding Fer4_7 PF12838.2 gi|452208233|ref|YP_007488355.1| - 0.0043 17.4 0.3 0.01 16.2 0.2 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Pyr_redox_3 PF13738.1 gi|452208233|ref|YP_007488355.1| - 0.0092 16.0 0.0 0.84 9.6 0.0 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_10 PF13460.1 gi|452208233|ref|YP_007488355.1| - 0.015 15.3 0.6 0.75 9.7 0.1 2.5 2 0 0 2 2 2 0 NADH(P)-binding Fer4_8 PF13183.1 gi|452208233|ref|YP_007488355.1| - 0.025 14.5 0.1 0.05 13.6 0.0 1.5 1 0 0 1 1 1 0 4Fe-4S dicluster domain TrkA_N PF02254.13 gi|452208233|ref|YP_007488355.1| - 0.03 14.2 0.0 0.13 12.2 0.0 2.1 2 1 0 2 2 2 0 TrkA-N domain Fer4_18 PF13746.1 gi|452208233|ref|YP_007488355.1| - 0.12 12.8 0.3 0.26 11.7 0.2 1.5 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|452208233|ref|YP_007488355.1| - 0.15 12.4 0.0 0.29 11.5 0.0 1.5 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|452208233|ref|YP_007488355.1| - 0.18 11.6 0.3 0.35 10.7 0.2 1.4 1 0 0 1 1 1 0 4Fe-4S dicluster domain K_oxygenase PF13434.1 gi|452208233|ref|YP_007488355.1| - 0.22 10.4 0.0 14 4.4 0.0 2.6 2 1 1 3 3 3 0 L-lysine 6-monooxygenase (NADPH-requiring) Fer4_3 PF12798.2 gi|452208233|ref|YP_007488355.1| - 0.96 10.1 3.5 2.7 8.7 2.4 1.7 1 0 0 1 1 1 0 4Fe-4S binding domain Gluconate_2-dh3 PF13618.1 gi|452208234|ref|YP_007488356.1| - 8.7e-14 51.7 0.0 1.2e-13 51.3 0.0 1.1 1 0 0 1 1 1 1 Gluconate 2-dehydrogenase subunit 3 BPD_transp_1 PF00528.17 gi|452208235|ref|YP_007488357.1| - 2.9e-29 101.8 30.6 5.9e-18 65.0 8.1 3.4 2 2 2 4 4 4 2 Binding-protein-dependent transport system inner membrane component DUF2975 PF11188.3 gi|452208235|ref|YP_007488357.1| - 0.0014 18.3 1.4 0.0014 18.3 1.0 4.1 4 1 0 4 4 4 1 Protein of unknown function (DUF2975) PgaD PF13994.1 gi|452208235|ref|YP_007488357.1| - 8.3 5.8 9.9 10 5.5 0.6 3.1 3 0 0 3 3 3 0 PgaD-like protein NTP_transferase PF00483.18 gi|452208236|ref|YP_007488358.1| - 8.2e-42 143.2 0.0 9.1e-42 143.0 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|452208236|ref|YP_007488358.1| - 9.8e-15 54.9 0.0 1.1e-14 54.7 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.14 gi|452208236|ref|YP_007488358.1| - 5e-05 22.9 0.0 0.00054 19.5 0.0 2.1 2 0 0 2 2 2 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DUF3149 PF11346.3 gi|452208237|ref|YP_007488359.1| - 8.5e-05 22.0 0.1 8.9e-05 21.9 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3149) SecE PF00584.15 gi|452208237|ref|YP_007488359.1| - 0.16 11.5 2.1 0.21 11.1 1.5 1.2 1 0 0 1 1 1 0 SecE/Sec61-gamma subunits of protein translocation complex CcoS PF03597.10 gi|452208237|ref|YP_007488359.1| - 9 5.8 7.5 2.6 7.5 2.5 2.0 2 0 0 2 2 2 0 Cytochrome oxidase maturation protein cbb3-type tRNA-synt_2c PF01411.14 gi|452208238|ref|YP_007488360.1| - 1.9e-108 363.1 0.0 2.4e-108 362.8 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (A) tRNA_SAD PF07973.9 gi|452208238|ref|YP_007488360.1| - 7.8e-12 44.8 0.2 1.9e-11 43.6 0.1 1.7 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain DHHA1 PF02272.14 gi|452208238|ref|YP_007488360.1| - 3.6e-09 36.2 4.6 8.5e-09 35.0 3.2 1.7 1 0 0 1 1 1 1 DHHA1 domain zf-C3HC4_4 PF15227.1 gi|452208239|ref|YP_007488361.1| - 0.078 12.8 0.0 0.15 11.9 0.0 1.4 1 0 0 1 1 1 0 zinc finger of C3HC4-type, RING DUF2975 PF11188.3 gi|452208241|ref|YP_007488363.1| - 0.78 9.4 5.1 0.3 10.8 1.1 2.1 2 1 0 2 2 2 0 Protein of unknown function (DUF2975) OCD_Mu_crystall PF02423.10 gi|452208242|ref|YP_007488364.1| - 2.6e-88 295.8 2.4 2.9e-88 295.6 1.7 1.0 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family MCPsignal PF00015.16 gi|452208243|ref|YP_007488365.1| - 6.5e-45 153.2 44.6 7.6e-42 143.2 17.0 3.1 2 1 1 3 3 3 2 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.20 gi|452208243|ref|YP_007488365.1| - 2.4e-10 40.4 0.7 2.4e-10 40.4 0.5 4.8 5 0 0 5 5 4 2 HAMP domain LOH1CR12 PF10158.4 gi|452208243|ref|YP_007488365.1| - 0.013 15.3 0.2 0.92 9.3 0.0 2.8 2 1 0 2 2 2 0 Tumour suppressor protein DUF948 PF06103.6 gi|452208243|ref|YP_007488365.1| - 0.028 14.2 0.6 0.028 14.2 0.4 6.1 5 2 2 7 7 7 0 Bacterial protein of unknown function (DUF948) TMEM125 PF15109.1 gi|452208243|ref|YP_007488365.1| - 0.036 14.1 0.2 0.079 13.0 0.2 1.5 1 0 0 1 1 1 0 TMEM125 protein family BLOC1_2 PF10046.4 gi|452208243|ref|YP_007488365.1| - 0.072 13.2 13.0 3 8.0 0.3 5.6 4 2 2 6 6 6 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Laminin_II PF06009.7 gi|452208243|ref|YP_007488365.1| - 0.072 12.8 16.2 1.5 8.6 1.1 3.9 2 1 1 3 3 3 0 Laminin Domain II LXG PF04740.7 gi|452208243|ref|YP_007488365.1| - 0.079 12.7 14.9 0.059 13.1 0.5 4.0 2 1 3 5 5 5 0 LXG domain of WXG superfamily ORF6C PF10552.4 gi|452208243|ref|YP_007488365.1| - 0.18 11.5 1.8 3.7 7.2 0.0 3.2 2 1 0 3 3 3 0 ORF6C domain NPV_P10 PF05531.7 gi|452208243|ref|YP_007488365.1| - 0.37 11.0 16.2 4 7.7 2.9 5.0 3 2 1 4 4 4 0 Nucleopolyhedrovirus P10 protein Reo_sigmaC PF04582.7 gi|452208243|ref|YP_007488365.1| - 0.44 9.6 23.0 0.73 8.9 5.7 3.3 1 1 2 3 3 3 0 Reovirus sigma C capsid protein Seryl_tRNA_N PF02403.17 gi|452208243|ref|YP_007488365.1| - 1.5 8.8 17.2 4.1 7.4 0.3 4.7 2 1 3 5 5 5 0 Seryl-tRNA synthetase N-terminal domain I_LWEQ PF01608.12 gi|452208243|ref|YP_007488365.1| - 1.8 8.5 12.4 0.23 11.3 4.4 2.5 2 0 0 2 2 2 0 I/LWEQ domain Fib_alpha PF08702.5 gi|452208243|ref|YP_007488365.1| - 2 8.5 6.2 8.7 6.4 0.2 3.3 2 1 2 4 4 4 0 Fibrinogen alpha/beta chain family IFT57 PF10498.4 gi|452208243|ref|YP_007488365.1| - 5 5.7 7.7 1.3 7.7 0.1 2.6 1 1 2 3 3 3 0 Intra-flagellar transport protein 57 DUF3407 PF11887.3 gi|452208243|ref|YP_007488365.1| - 5.2 6.2 14.9 0.17 11.1 2.7 2.7 2 1 1 3 3 3 0 Protein of unknown function (DUF3407) Syntaxin PF00804.20 gi|452208243|ref|YP_007488365.1| - 5.4 7.2 16.8 2.1 8.5 0.2 4.7 2 1 1 3 3 3 0 Syntaxin AAA_13 PF13166.1 gi|452208243|ref|YP_007488365.1| - 5.7 5.2 11.5 2.2 6.6 3.9 2.4 1 1 0 2 2 2 0 AAA domain DUF972 PF06156.8 gi|452208243|ref|YP_007488365.1| - 6.2 7.2 8.1 36 4.7 0.1 4.3 4 1 0 4 4 4 0 Protein of unknown function (DUF972) DUF2938 PF11158.3 gi|452208244|ref|YP_007488366.1| - 0.021 14.1 9.3 0.021 14.1 5.7 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF2938) DUF91 PF01939.11 gi|452208245|ref|YP_007488367.1| - 1.4e-08 34.1 0.0 1.8e-08 33.8 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF91 zf-C4_Topoisom PF01396.14 gi|452208245|ref|YP_007488367.1| - 6.5e-06 25.5 0.2 6.5e-06 25.5 0.2 3.5 4 0 0 4 4 4 1 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_2 PF13240.1 gi|452208245|ref|YP_007488367.1| - 0.012 15.1 0.2 0.048 13.1 0.1 2.1 1 0 0 1 1 1 0 zinc-ribbon domain DUF1272 PF06906.6 gi|452208245|ref|YP_007488367.1| - 0.36 10.7 5.6 0.13 12.1 0.9 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1272) Zn-ribbon_8 PF09723.5 gi|452208245|ref|YP_007488367.1| - 0.45 10.5 0.1 0.45 10.5 0.0 2.8 3 0 0 3 3 3 0 Zinc ribbon domain tRNA_int_endo PF01974.12 gi|452208246|ref|YP_007488368.1| - 4.8e-34 116.0 0.0 1.5e-24 85.5 0.0 2.7 2 1 0 2 2 2 2 tRNA intron endonuclease, catalytic C-terminal domain tRNA_int_endo_N PF02778.9 gi|452208246|ref|YP_007488368.1| - 3.7e-28 96.8 0.1 2e-13 49.6 0.0 2.5 2 0 0 2 2 2 2 tRNA intron endonuclease, N-terminal domain tRNA-synt_1b PF00579.20 gi|452208247|ref|YP_007488369.1| - 3.4e-39 134.7 0.0 2.5e-23 82.6 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class I (W and Y) GCV_T PF01571.16 gi|452208248|ref|YP_007488370.1| - 1.4e-39 135.6 0.0 1.9e-39 135.2 0.0 1.1 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain GCV_T_C PF08669.6 gi|452208248|ref|YP_007488370.1| - 1.3e-17 63.5 0.0 2.4e-17 62.7 0.0 1.5 1 0 0 1 1 1 1 Glycine cleavage T-protein C-terminal barrel domain HTH_20 PF12840.2 gi|452208249|ref|YP_007488371.1| - 0.00035 20.3 0.1 0.0005 19.8 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_34 PF13601.1 gi|452208249|ref|YP_007488371.1| - 0.0048 16.9 0.1 0.0063 16.5 0.0 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.14 gi|452208249|ref|YP_007488371.1| - 0.0097 15.5 0.0 0.013 15.1 0.0 1.1 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB ASCH PF04266.9 gi|452208250|ref|YP_007488372.1| - 0.0018 18.6 0.0 0.0026 18.1 0.0 1.2 1 0 0 1 1 1 1 ASCH domain Peptidase_U40 PF10464.4 gi|452208251|ref|YP_007488373.1| - 0.031 13.6 0.3 0.042 13.2 0.2 1.2 1 0 0 1 1 1 0 Peptidase U40 DUF2157 PF09925.4 gi|452208252|ref|YP_007488374.1| - 2.2e-27 95.4 8.8 2.2e-27 95.4 6.1 3.7 3 1 1 4 4 4 1 Predicted membrane protein (DUF2157) DUF2680 PF10925.3 gi|452208252|ref|YP_007488374.1| - 0.081 12.7 0.1 0.13 12.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2680) polyprenyl_synt PF00348.12 gi|452208254|ref|YP_007488376.1| - 1e-46 158.9 0.0 1.4e-46 158.4 0.0 1.2 1 0 0 1 1 1 1 Polyprenyl synthetase Pribosyltran_N PF13793.1 gi|452208255|ref|YP_007488377.1| - 1.7e-19 69.6 0.0 9.4e-17 60.8 0.0 2.3 2 1 0 2 2 2 2 N-terminal domain of ribose phosphate pyrophosphokinase Pribosyltran PF00156.22 gi|452208255|ref|YP_007488377.1| - 9e-09 35.1 0.8 4.5e-08 32.8 0.1 2.3 2 1 0 2 2 2 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|452208255|ref|YP_007488377.1| - 0.00097 18.4 0.1 0.0021 17.2 0.0 1.6 2 0 0 2 2 2 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.1 gi|452208255|ref|YP_007488377.1| - 0.0041 16.4 0.1 0.0096 15.2 0.1 1.7 1 1 0 1 1 1 1 Phosphoribosyl transferase Pribosyl_synth PF14572.1 gi|452208255|ref|YP_007488377.1| - 0.089 12.5 0.2 0.16 11.6 0.1 1.3 1 0 0 1 1 1 0 Phosphoribosyl synthetase-associated domain Peptidase_MA_2 PF13485.1 gi|452208256|ref|YP_007488378.1| - 3.6e-11 43.2 2.2 7.2e-11 42.2 1.5 1.5 1 0 0 1 1 1 1 Peptidase MA superfamily CARDB PF07705.6 gi|452208256|ref|YP_007488378.1| - 0.002 18.1 0.0 0.36 10.9 0.0 2.6 2 0 0 2 2 2 1 CARDB Big_1 PF02369.11 gi|452208256|ref|YP_007488378.1| - 0.12 12.3 2.9 0.33 10.9 2.0 1.8 1 0 0 1 1 1 0 Bacterial Ig-like domain (group 1) Peptidase_M61 PF05299.7 gi|452208256|ref|YP_007488378.1| - 0.14 12.1 1.5 0.31 11.0 0.4 2.0 2 1 0 2 2 2 0 M61 glycyl aminopeptidase DUF1155 PF06633.6 gi|452208256|ref|YP_007488378.1| - 0.15 11.3 1.8 0.25 10.6 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1155) tRNA-synt_1 PF00133.17 gi|452208257|ref|YP_007488379.1| - 6.1e-178 592.5 0.1 8.5e-178 592.0 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) tRNA-synt_1g PF09334.6 gi|452208257|ref|YP_007488379.1| - 1.4e-30 106.3 0.5 2.4e-13 49.5 0.0 4.2 4 1 0 4 4 4 3 tRNA synthetases class I (M) Anticodon_1 PF08264.8 gi|452208257|ref|YP_007488379.1| - 2.4e-30 105.2 0.2 5.4e-30 104.1 0.1 1.7 2 0 0 2 2 2 1 Anticodon-binding domain of tRNA tRNA-synt_1e PF01406.14 gi|452208257|ref|YP_007488379.1| - 5.2e-06 25.7 0.0 9.6e-05 21.6 0.0 2.7 3 0 0 3 3 3 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1_2 PF13603.1 gi|452208257|ref|YP_007488379.1| - 0.0066 15.7 0.0 0.016 14.4 0.0 1.6 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1f PF01921.13 gi|452208257|ref|YP_007488379.1| - 0.029 13.0 0.0 0.079 11.6 0.0 1.7 2 0 0 2 2 2 0 tRNA synthetases class I (K) Flg_hook PF02120.11 gi|452208257|ref|YP_007488379.1| - 0.067 12.8 0.4 0.23 11.1 0.0 2.0 2 0 0 2 2 2 0 Flagellar hook-length control protein FliK PGM_PMM_I PF02878.11 gi|452208258|ref|YP_007488380.1| - 3.4e-36 123.7 0.0 6.2e-36 122.9 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_III PF02880.11 gi|452208258|ref|YP_007488380.1| - 7.7e-23 80.7 0.1 1.3e-22 79.9 0.1 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_II PF02879.11 gi|452208258|ref|YP_007488380.1| - 6.9e-20 71.3 0.1 1.8e-19 69.9 0.1 1.7 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.15 gi|452208258|ref|YP_007488380.1| - 1.9e-14 53.4 0.1 5.7e-14 51.8 0.0 2.0 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain DHH PF01368.15 gi|452208259|ref|YP_007488381.1| - 1.2e-13 50.8 0.0 1.8e-13 50.4 0.0 1.2 1 0 0 1 1 1 1 DHH family DHHA1 PF02272.14 gi|452208259|ref|YP_007488381.1| - 3.6e-12 45.7 4.8 9.2e-12 44.4 3.4 1.7 1 0 0 1 1 1 1 DHHA1 domain Amino_oxidase PF01593.19 gi|452208260|ref|YP_007488382.1| - 4.4e-22 78.7 1.7 3.2e-21 75.9 1.2 2.0 1 1 0 1 1 1 1 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.1 gi|452208260|ref|YP_007488382.1| - 1.5e-16 60.1 0.8 4.1e-16 58.7 0.3 2.1 2 0 0 2 2 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.19 gi|452208260|ref|YP_007488382.1| - 2.2e-15 56.4 6.6 6.8e-08 31.8 0.3 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox PF00070.22 gi|452208260|ref|YP_007488382.1| - 2.8e-07 30.8 1.7 8.1e-06 26.1 0.5 2.6 3 0 0 3 3 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.9 gi|452208260|ref|YP_007488382.1| - 2.5e-05 24.2 0.2 0.0001 22.2 0.3 1.8 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.2 gi|452208260|ref|YP_007488382.1| - 3.6e-05 23.0 3.1 5.5e-05 22.4 2.1 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|452208260|ref|YP_007488382.1| - 6e-05 22.2 0.3 0.00073 18.6 0.2 2.1 2 0 0 2 2 2 1 FAD binding domain FAD_binding_2 PF00890.19 gi|452208260|ref|YP_007488382.1| - 0.00016 20.6 2.1 0.0003 19.7 1.5 1.4 1 0 0 1 1 1 1 FAD binding domain Thi4 PF01946.12 gi|452208260|ref|YP_007488382.1| - 0.00021 20.4 0.8 0.00035 19.7 0.6 1.2 1 0 0 1 1 1 1 Thi4 family GIDA PF01134.17 gi|452208260|ref|YP_007488382.1| - 0.0022 16.9 1.1 0.003 16.5 0.7 1.1 1 0 0 1 1 1 1 Glucose inhibited division protein A HI0933_like PF03486.9 gi|452208260|ref|YP_007488382.1| - 0.0023 16.4 0.0 0.016 13.7 0.2 1.8 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox_3 PF13738.1 gi|452208260|ref|YP_007488382.1| - 0.0059 16.6 0.6 0.028 14.4 0.8 1.7 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Strep_67kDa_ant PF06100.6 gi|452208260|ref|YP_007488382.1| - 0.031 12.6 0.0 0.042 12.2 0.0 1.1 1 0 0 1 1 1 0 Streptococcal 67 kDa myosin-cross-reactive antigen like family ApbA PF02558.11 gi|452208260|ref|YP_007488382.1| - 0.17 11.2 0.2 0.31 10.4 0.1 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA BCD PF15461.1 gi|452208261|ref|YP_007488383.1| - 3.8e-56 190.3 15.5 5.9e-56 189.7 10.7 1.3 1 0 0 1 1 1 1 Beta-carotene 15,15'-dioxygenase T2SM PF04612.7 gi|452208261|ref|YP_007488383.1| - 2 8.2 4.5 0.39 10.4 0.3 1.8 2 0 0 2 2 2 0 Type II secretion system (T2SS), protein M Epiglycanin_C PF14654.1 gi|452208261|ref|YP_007488383.1| - 2.2 8.3 5.5 9.4 6.2 0.0 3.3 2 2 1 3 3 3 0 Mucin, catalytic, TM and cytoplasmic tail region Beta-Casp PF10996.3 gi|452208263|ref|YP_007488385.1| - 8.2e-32 109.8 0.0 1.5e-31 108.9 0.0 1.5 1 0 0 1 1 1 1 Beta-Casp domain Lactamase_B PF00753.22 gi|452208263|ref|YP_007488385.1| - 6e-23 81.5 2.8 1.2e-22 80.5 1.9 1.5 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily RMMBL PF07521.7 gi|452208263|ref|YP_007488385.1| - 1.3e-14 53.7 0.0 5.7e-14 51.6 0.0 2.1 2 0 0 2 2 2 1 RNA-metabolising metallo-beta-lactamase Lactamase_B_2 PF12706.2 gi|452208263|ref|YP_007488385.1| - 1.7e-11 44.0 0.2 6.8e-11 42.0 0.0 2.0 2 0 0 2 2 2 1 Beta-lactamase superfamily domain KH_2 PF07650.12 gi|452208263|ref|YP_007488385.1| - 2.6e-08 33.2 0.0 5.7e-07 28.9 0.0 2.4 2 0 0 2 2 2 1 KH domain KH_1 PF00013.24 gi|452208263|ref|YP_007488385.1| - 0.00011 21.7 0.1 0.00032 20.2 0.0 1.8 2 0 0 2 2 2 1 KH domain Lactamase_B_3 PF13483.1 gi|452208263|ref|YP_007488385.1| - 0.00087 19.0 0.0 0.0019 17.9 0.0 1.5 1 0 0 1 1 1 1 Beta-lactamase superfamily domain KH_4 PF13083.1 gi|452208263|ref|YP_007488385.1| - 0.026 14.1 0.0 0.06 13.0 0.0 1.5 1 0 0 1 1 1 0 KH domain KH_3 PF13014.1 gi|452208263|ref|YP_007488385.1| - 0.065 12.9 0.2 0.15 11.7 0.1 1.6 1 0 0 1 1 1 0 KH domain TrmB PF01978.14 gi|452208264|ref|YP_007488386.1| - 8.6e-21 73.4 0.0 2.7e-20 71.8 0.0 1.9 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB Regulator_TrmB PF11495.3 gi|452208264|ref|YP_007488386.1| - 0.014 14.3 0.0 0.019 13.9 0.0 1.1 1 0 0 1 1 1 0 Archaeal transcriptional regulator TrmB HTH_20 PF12840.2 gi|452208264|ref|YP_007488386.1| - 0.048 13.4 0.0 0.18 11.6 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain Pyridoxal_deC PF00282.14 gi|452208264|ref|YP_007488386.1| - 0.092 11.1 0.0 0.13 10.7 0.0 1.1 1 0 0 1 1 1 0 Pyridoxal-dependent decarboxylase conserved domain HTH_5 PF01022.15 gi|452208264|ref|YP_007488386.1| - 0.11 12.1 0.0 0.41 10.3 0.0 1.9 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family LexA_DNA_bind PF01726.11 gi|452208264|ref|YP_007488386.1| - 0.16 11.5 0.0 0.44 10.1 0.0 1.8 1 0 0 1 1 1 0 LexA DNA binding domain Ammonium_transp PF00909.16 gi|452208265|ref|YP_007488387.1| - 1.6e-92 310.0 37.8 1.9e-92 309.8 26.2 1.0 1 0 0 1 1 1 1 Ammonium Transporter Family P-II PF00543.17 gi|452208266|ref|YP_007488388.1| - 7.9e-31 106.5 0.0 9.2e-31 106.3 0.0 1.0 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II Cu_amine_oxid PF01179.15 gi|452208267|ref|YP_007488389.1| - 4.2e-147 490.1 0.0 5.2e-147 489.8 0.0 1.1 1 0 0 1 1 1 1 Copper amine oxidase, enzyme domain Cu_amine_oxidN3 PF02728.11 gi|452208267|ref|YP_007488389.1| - 2e-21 75.9 0.0 4.1e-21 74.9 0.0 1.5 1 0 0 1 1 1 1 Copper amine oxidase, N3 domain Cu_amine_oxidN2 PF02727.11 gi|452208267|ref|YP_007488389.1| - 1.5e-12 47.4 0.2 8.6e-12 44.9 0.0 2.3 3 0 0 3 3 3 1 Copper amine oxidase, N2 domain DsbD_2 PF13386.1 gi|452208268|ref|YP_007488390.1| - 1.5e-44 152.1 21.4 1.8e-44 151.8 14.9 1.0 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region IncA PF04156.9 gi|452208268|ref|YP_007488390.1| - 0.53 9.8 0.0 0.53 9.8 0.0 3.2 3 1 1 4 4 4 0 IncA protein ResIII PF04851.10 gi|452208269|ref|YP_007488391.1| - 1.8e-23 83.3 0.0 2.2e-22 79.7 0.0 2.1 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_C PF00271.26 gi|452208269|ref|YP_007488391.1| - 5.4e-16 58.2 0.0 1.1e-15 57.2 0.0 1.5 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DEAD PF00270.24 gi|452208269|ref|YP_007488391.1| - 2.1e-10 40.3 0.0 4.6e-10 39.2 0.0 1.5 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C_2 PF13307.1 gi|452208269|ref|YP_007488391.1| - 0.0047 16.9 0.0 5.6 6.8 0.0 2.7 3 0 0 3 3 3 2 Helicase C-terminal domain GrpE PF01025.14 gi|452208270|ref|YP_007488392.1| - 1.7e-40 138.2 5.9 2.2e-40 137.9 4.1 1.1 1 0 0 1 1 1 1 GrpE ERM PF00769.14 gi|452208270|ref|YP_007488392.1| - 0.0031 17.0 6.2 0.0035 16.9 4.3 1.3 1 0 0 1 1 1 1 Ezrin/radixin/moesin family OmpH PF03938.9 gi|452208270|ref|YP_007488392.1| - 0.015 15.2 4.3 0.02 14.8 3.0 1.2 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) IncA PF04156.9 gi|452208270|ref|YP_007488392.1| - 0.015 14.9 5.9 0.019 14.5 4.1 1.1 1 0 0 1 1 1 0 IncA protein SGT1 PF07093.6 gi|452208270|ref|YP_007488392.1| - 0.017 13.5 1.0 0.017 13.5 0.7 1.1 1 0 0 1 1 1 0 SGT1 protein DUF2353 PF09789.4 gi|452208270|ref|YP_007488392.1| - 0.019 14.2 4.1 0.023 13.9 2.8 1.1 1 0 0 1 1 1 0 Uncharacterized coiled-coil protein (DUF2353) Wbp11 PF09429.5 gi|452208270|ref|YP_007488392.1| - 0.055 13.4 11.2 1.5 8.8 4.6 2.2 1 1 1 2 2 2 0 WW domain binding protein 11 TMF_DNA_bd PF12329.3 gi|452208270|ref|YP_007488392.1| - 0.13 12.1 6.1 0.16 11.7 3.2 1.9 1 1 0 1 1 1 0 TATA element modulatory factor 1 DNA binding Herpes_UL6 PF01763.11 gi|452208270|ref|YP_007488392.1| - 0.16 10.1 0.7 0.19 9.8 0.5 1.1 1 0 0 1 1 1 0 Herpesvirus UL6 like VitD-bind_III PF09164.5 gi|452208270|ref|YP_007488392.1| - 0.16 11.5 2.1 0.74 9.4 0.7 2.1 2 0 0 2 2 2 0 Vitamin D binding protein, domain III TBPIP PF07106.8 gi|452208270|ref|YP_007488392.1| - 0.18 11.3 4.0 0.25 10.8 2.8 1.2 1 0 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) OrfB_IS605 PF01385.14 gi|452208270|ref|YP_007488392.1| - 0.28 10.5 3.0 0.39 10.0 2.1 1.1 1 0 0 1 1 1 0 Probable transposase DUF2852 PF11014.3 gi|452208270|ref|YP_007488392.1| - 0.28 11.1 3.6 0.43 10.5 2.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2852) Mnd1 PF03962.10 gi|452208270|ref|YP_007488392.1| - 0.33 10.5 7.1 0.44 10.1 4.9 1.2 1 0 0 1 1 1 0 Mnd1 family GvpL_GvpF PF06386.6 gi|452208270|ref|YP_007488392.1| - 0.48 9.9 6.7 0.71 9.4 4.7 1.2 1 0 0 1 1 1 0 Gas vesicle synthesis protein GvpL/GvpF APG6 PF04111.7 gi|452208270|ref|YP_007488392.1| - 0.77 8.7 6.2 0.98 8.3 4.3 1.1 1 0 0 1 1 1 0 Autophagy protein Apg6 Macoilin PF09726.4 gi|452208270|ref|YP_007488392.1| - 1.1 7.5 6.1 1.4 7.0 4.2 1.1 1 0 0 1 1 1 0 Transmembrane protein FUSC PF04632.7 gi|452208270|ref|YP_007488392.1| - 1.1 7.5 4.3 1.4 7.2 3.0 1.3 1 0 0 1 1 1 0 Fusaric acid resistance protein family CorA PF01544.13 gi|452208270|ref|YP_007488392.1| - 1.2 8.1 4.3 1.6 7.6 3.0 1.2 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein DUF972 PF06156.8 gi|452208270|ref|YP_007488392.1| - 1.7 9.0 4.5 3.7 7.9 3.1 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF972) HSP70 PF00012.15 gi|452208271|ref|YP_007488393.1| - 3.8e-238 791.3 14.0 6.7e-236 783.9 9.7 2.0 1 1 0 1 1 1 1 Hsp70 protein MreB_Mbl PF06723.8 gi|452208271|ref|YP_007488393.1| - 2.3e-19 69.1 0.4 7.5e-19 67.4 0.3 1.8 1 1 0 1 1 1 1 MreB/Mbl protein StbA PF06406.6 gi|452208271|ref|YP_007488393.1| - 0.0048 15.8 0.0 0.011 14.7 0.0 1.5 1 0 0 1 1 1 1 StbA protein Hydantoinase_A PF01968.13 gi|452208271|ref|YP_007488393.1| - 0.13 11.3 0.1 0.13 11.3 0.1 3.3 4 0 0 4 4 4 0 Hydantoinase/oxoprolinase DUF812 PF05667.6 gi|452208271|ref|YP_007488393.1| - 0.27 9.6 8.7 0.52 8.7 6.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF812) PhyH PF05721.8 gi|452208271|ref|YP_007488393.1| - 0.42 10.6 2.2 1.1 9.3 0.8 2.1 2 0 0 2 2 2 0 Phytanoyl-CoA dioxygenase (PhyH) Phlebovirus_NSM PF07246.6 gi|452208271|ref|YP_007488393.1| - 1.1 8.3 13.0 5 6.1 7.2 2.2 2 0 0 2 2 2 0 Phlebovirus nonstructural protein NS-M FtsA PF14450.1 gi|452208271|ref|YP_007488393.1| - 1.3 8.8 6.3 11 5.9 0.0 3.8 3 1 1 4 4 4 0 Cell division protein FtsA CTDII PF01556.13 gi|452208273|ref|YP_007488395.1| - 4.7e-33 112.9 0.1 4.3e-24 84.2 0.0 2.7 3 0 0 3 3 3 2 DnaJ C terminal domain DnaJ PF00226.26 gi|452208273|ref|YP_007488395.1| - 7e-23 80.1 3.8 1.4e-22 79.2 2.6 1.5 1 0 0 1 1 1 1 DnaJ domain DnaJ_CXXCXGXG PF00684.14 gi|452208273|ref|YP_007488395.1| - 1.4e-15 57.1 14.1 2.6e-15 56.2 9.8 1.5 1 0 0 1 1 1 1 DnaJ central domain RPT PF13446.1 gi|452208273|ref|YP_007488395.1| - 0.04 13.3 0.1 0.14 11.6 0.0 1.8 2 0 0 2 2 2 0 A repeated domain in UCH-protein DZR PF12773.2 gi|452208273|ref|YP_007488395.1| - 0.51 10.2 12.2 1.6 8.5 8.5 1.8 1 1 1 2 2 2 0 Double zinc ribbon DUF2583 PF10762.4 gi|452208274|ref|YP_007488396.1| - 0.12 12.5 1.0 0.16 12.0 0.7 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2583) DUF1286 PF06939.6 gi|452208274|ref|YP_007488396.1| - 0.19 11.9 1.2 0.36 11.0 0.9 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF1286) NfeD PF01957.13 gi|452208274|ref|YP_007488396.1| - 0.47 10.5 2.7 0.53 10.4 1.9 1.1 1 0 0 1 1 1 0 NfeD-like C-terminal, partner-binding Herpes_US9 PF06072.6 gi|452208274|ref|YP_007488396.1| - 4.1 7.3 6.1 0.99 9.2 0.2 2.5 3 0 0 3 3 3 0 Alphaherpesvirus tegument protein US9 DUF1469 PF07332.6 gi|452208274|ref|YP_007488396.1| - 6 6.6 6.6 7.9 6.2 4.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) DUF1673 PF07895.6 gi|452208275|ref|YP_007488397.1| - 0.096 12.1 0.2 0.11 12.0 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1673) Peptidase_S49 PF01343.13 gi|452208276|ref|YP_007488398.1| - 2.4e-39 134.6 0.0 3.3e-39 134.1 0.0 1.2 1 0 0 1 1 1 1 Peptidase family S49 SDH_sah PF01972.11 gi|452208276|ref|YP_007488398.1| - 0.0025 16.6 0.0 0.0036 16.1 0.0 1.2 1 0 0 1 1 1 1 Serine dehydrogenase proteinase DUF3500 PF12006.3 gi|452208276|ref|YP_007488398.1| - 0.019 13.8 0.1 0.027 13.4 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3500) CLP_protease PF00574.18 gi|452208276|ref|YP_007488398.1| - 0.07 12.7 0.0 2.4 7.7 0.0 2.4 2 0 0 2 2 2 0 Clp protease MacB_PCD PF12704.2 gi|452208276|ref|YP_007488398.1| - 5.3 6.5 7.8 0.44 10.0 0.0 2.4 3 0 0 3 3 3 0 MacB-like periplasmic core domain DUF2309 PF10070.4 gi|452208277|ref|YP_007488399.1| - 2.8e-246 819.4 0.0 1e-245 817.6 0.0 1.7 1 1 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2309) Oxidored_q1 PF00361.15 gi|452208278|ref|YP_007488400.1| - 2e-29 102.7 10.0 2e-29 102.7 7.0 2.0 2 1 0 2 2 2 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1_N PF00662.15 gi|452208278|ref|YP_007488400.1| - 2.6e-07 30.1 0.1 7.6e-07 28.6 0.1 1.8 1 0 0 1 1 1 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus DUF2583 PF10762.4 gi|452208278|ref|YP_007488400.1| - 7.1 6.8 10.7 1.2 9.3 1.2 3.3 3 0 0 3 3 3 0 Protein of unknown function (DUF2583) VanZ PF04892.7 gi|452208279|ref|YP_007488401.1| - 5.2e-08 32.9 0.0 7.8e-08 32.3 0.0 1.3 1 1 0 1 1 1 1 VanZ like family Radical_SAM PF04055.16 gi|452208280|ref|YP_007488402.1| - 0.00016 21.8 0.3 0.00033 20.8 0.2 1.6 1 1 0 1 1 1 1 Radical SAM superfamily MatE PF01554.13 gi|452208281|ref|YP_007488403.1| - 9.6e-59 197.6 35.3 4.7e-34 117.3 6.8 2.8 3 0 0 3 3 3 2 MatE Polysacc_synt_C PF14667.1 gi|452208281|ref|YP_007488403.1| - 2.3e-06 27.5 6.8 2.3e-06 27.5 4.7 5.2 4 3 0 4 4 4 2 Polysaccharide biosynthesis C-terminal domain UPF0175 PF03683.8 gi|452208282|ref|YP_007488404.1| - 3.1e-06 26.5 0.0 3.6e-06 26.3 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0175) ScdA_N PF04405.9 gi|452208282|ref|YP_007488404.1| - 0.014 14.7 0.0 0.02 14.3 0.0 1.2 1 0 0 1 1 1 0 Domain of Unknown function (DUF542) HTH_39 PF14090.1 gi|452208282|ref|YP_007488404.1| - 0.053 12.9 0.1 0.11 12.0 0.1 1.5 1 1 0 1 1 1 0 Helix-turn-helix domain zf-ribbon_3 PF13248.1 gi|452208283|ref|YP_007488405.1| - 0.00032 19.7 1.1 0.25 10.6 0.0 2.2 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.2 gi|452208283|ref|YP_007488405.1| - 0.00045 19.9 0.9 0.00095 18.9 0.6 1.5 1 1 0 1 1 1 1 Double zinc ribbon zf-LITAF-like PF10601.4 gi|452208283|ref|YP_007488405.1| - 0.0021 17.8 0.4 0.06 13.2 0.0 2.1 2 0 0 2 2 2 1 LITAF-like zinc ribbon domain zf-NADH-PPase PF09297.6 gi|452208283|ref|YP_007488405.1| - 0.0022 17.4 1.6 0.63 9.5 0.1 2.4 2 0 0 2 2 2 2 NADH pyrophosphatase zinc ribbon domain DNA_RNApol_7kD PF03604.8 gi|452208283|ref|YP_007488405.1| - 0.0038 16.6 0.1 2.2 7.7 0.0 2.3 2 0 0 2 2 2 2 DNA directed RNA polymerase, 7 kDa subunit UPF0547 PF10571.4 gi|452208283|ref|YP_007488405.1| - 0.0063 16.1 3.8 0.78 9.4 0.4 2.4 2 0 0 2 2 2 2 Uncharacterised protein family UPF0547 zinc_ribbon_2 PF13240.1 gi|452208283|ref|YP_007488405.1| - 0.011 15.2 3.8 1.2 8.7 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain NOB1_Zn_bind PF08772.6 gi|452208283|ref|YP_007488405.1| - 0.012 15.3 0.7 1.2 9.0 0.0 2.1 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like DUF1272 PF06906.6 gi|452208283|ref|YP_007488405.1| - 0.017 14.9 2.3 0.094 12.5 0.2 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1272) Terminase_GpA PF05876.7 gi|452208283|ref|YP_007488405.1| - 0.025 12.9 0.3 0.027 12.8 0.2 1.0 1 0 0 1 1 1 0 Phage terminase large subunit (GpA) Zn-ribbon_8 PF09723.5 gi|452208283|ref|YP_007488405.1| - 0.028 14.3 2.4 3.5 7.6 0.1 2.3 2 0 0 2 2 2 0 Zinc ribbon domain GFA PF04828.9 gi|452208283|ref|YP_007488405.1| - 0.03 14.2 1.9 1.1 9.2 0.1 2.1 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme zinc-ribbons_6 PF07191.7 gi|452208283|ref|YP_007488405.1| - 0.033 13.9 0.2 0.05 13.4 0.1 1.2 1 0 0 1 1 1 0 zinc-ribbons PhnA_Zn_Ribbon PF08274.7 gi|452208283|ref|YP_007488405.1| - 0.04 13.7 0.3 4.8 7.0 0.0 2.2 2 0 0 2 2 2 0 PhnA Zinc-Ribbon zf-IS66 PF13005.2 gi|452208283|ref|YP_007488405.1| - 0.042 13.8 4.0 2.1 8.4 0.0 2.5 2 1 0 2 2 2 0 zinc-finger binding domain of transposase IS66 Zn_ribbon_recom PF13408.1 gi|452208283|ref|YP_007488405.1| - 0.1 12.8 2.0 1.9 8.8 2.6 1.8 1 1 1 2 2 2 0 Recombinase zinc beta ribbon domain zf-Mss51 PF13824.1 gi|452208283|ref|YP_007488405.1| - 0.12 12.2 2.8 0.53 10.1 2.0 1.8 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 TF_Zn_Ribbon PF08271.7 gi|452208283|ref|YP_007488405.1| - 0.15 11.4 4.6 0.88 8.9 3.2 2.0 1 1 1 2 2 2 0 TFIIB zinc-binding A2L_zn_ribbon PF08792.5 gi|452208283|ref|YP_007488405.1| - 0.15 11.5 0.5 6 6.4 0.1 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain Lar_restr_allev PF14354.1 gi|452208283|ref|YP_007488405.1| - 0.22 11.8 2.9 0.42 10.9 2.0 1.6 1 1 0 1 1 1 0 Restriction alleviation protein Lar Nudix_N_2 PF14803.1 gi|452208283|ref|YP_007488405.1| - 0.22 11.2 7.6 2 8.1 5.3 2.2 1 1 0 1 1 1 0 Nudix N-terminal OrfB_Zn_ribbon PF07282.6 gi|452208283|ref|YP_007488405.1| - 0.24 11.0 2.9 1 9.0 1.8 1.9 1 1 2 3 3 3 0 Putative transposase DNA-binding domain zf-C4_Topoisom PF01396.14 gi|452208283|ref|YP_007488405.1| - 0.38 10.2 2.2 2.7 7.5 0.1 2.2 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger DNA_ligase_ZBD PF03119.11 gi|452208283|ref|YP_007488405.1| - 0.41 10.3 5.3 5.4 6.7 0.4 2.4 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Zn_Tnp_IS91 PF14319.1 gi|452208283|ref|YP_007488405.1| - 0.41 10.1 3.1 1.5 8.3 2.1 1.7 1 1 0 1 1 1 0 Transposase zinc-binding domain DUF35_N PF12172.3 gi|452208283|ref|YP_007488405.1| - 0.44 10.5 5.6 6.1 6.8 0.3 2.6 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Ogr_Delta PF04606.7 gi|452208283|ref|YP_007488405.1| - 0.48 10.1 2.1 11 5.7 0.1 2.3 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger DUF1610 PF07754.6 gi|452208283|ref|YP_007488405.1| - 0.9 9.7 8.0 0.5 10.5 0.9 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) zf-ISL3 PF14690.1 gi|452208283|ref|YP_007488405.1| - 1.4 9.0 10.6 0.84 9.7 0.8 2.7 2 1 1 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Zn_Tnp_IS1595 PF12760.2 gi|452208283|ref|YP_007488405.1| - 4.2 7.2 6.2 44 3.9 4.6 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain GATase_5 PF13507.1 gi|452208284|ref|YP_007488406.1| - 7.4e-45 152.8 0.0 9.2e-45 152.5 0.0 1.1 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.23 gi|452208284|ref|YP_007488406.1| - 3.1e-08 33.3 0.0 3.9e-08 32.9 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase class-I DJ-1_PfpI PF01965.19 gi|452208284|ref|YP_007488406.1| - 2.4e-05 23.8 0.0 4e-05 23.0 0.0 1.4 1 0 0 1 1 1 1 DJ-1/PfpI family GATase_3 PF07685.9 gi|452208284|ref|YP_007488406.1| - 3.3e-05 23.5 0.0 5.9e-05 22.7 0.0 1.4 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain DUF4066 PF13278.1 gi|452208284|ref|YP_007488406.1| - 0.0019 17.4 0.0 0.0026 17.0 0.0 1.2 1 0 0 1 1 1 1 Putative amidotransferase SNO PF01174.14 gi|452208284|ref|YP_007488406.1| - 0.066 12.8 0.0 0.11 12.1 0.0 1.2 1 0 0 1 1 1 0 SNO glutamine amidotransferase family PurS PF02700.9 gi|452208285|ref|YP_007488407.1| - 6.5e-26 90.1 0.0 7.2e-26 89.9 0.0 1.0 1 0 0 1 1 1 1 Phosphoribosylformylglycinamidine (FGAM) synthase Rib_5-P_isom_A PF06026.9 gi|452208285|ref|YP_007488407.1| - 0.022 14.0 0.2 0.028 13.7 0.1 1.1 1 0 0 1 1 1 0 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) Rootletin PF15035.1 gi|452208287|ref|YP_007488409.1| - 0.039 13.9 0.0 0.088 12.7 0.0 1.6 1 1 1 2 2 2 0 Ciliary rootlet component, centrosome cohesion LPP PF04728.8 gi|452208287|ref|YP_007488409.1| - 0.072 12.8 0.0 19 5.1 0.0 3.1 3 0 0 3 3 3 0 Lipoprotein leucine-zipper NPV_P10 PF05531.7 gi|452208287|ref|YP_007488409.1| - 0.1 12.8 0.0 3.4 7.9 0.0 3.0 3 0 0 3 3 3 0 Nucleopolyhedrovirus P10 protein Hemerythrin PF01814.18 gi|452208287|ref|YP_007488409.1| - 1.6 8.8 17.1 5.5 7.1 1.0 4.5 1 1 2 3 3 3 0 Hemerythrin HHE cation binding domain PilJ PF13675.1 gi|452208287|ref|YP_007488409.1| - 2.1 8.6 11.4 17 5.7 1.1 3.3 1 1 2 3 3 3 0 Type IV pili methyl-accepting chemotaxis transducer N-term FAD_binding_3 PF01494.14 gi|452208288|ref|YP_007488410.1| - 0.00031 19.8 0.0 0.0081 15.2 0.0 2.1 2 0 0 2 2 2 2 FAD binding domain Pyr_redox PF00070.22 gi|452208288|ref|YP_007488410.1| - 0.14 12.5 0.0 3.6 8.0 0.0 2.3 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Y1_Tnp PF01797.11 gi|452208289|ref|YP_007488411.1| - 3.7e-36 123.6 0.0 4.2e-36 123.4 0.0 1.0 1 0 0 1 1 1 1 Transposase IS200 like OrfB_Zn_ribbon PF07282.6 gi|452208290|ref|YP_007488412.1| - 1.1e-22 79.4 0.2 1.9e-22 78.7 0.2 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|452208290|ref|YP_007488412.1| - 0.0019 17.6 0.0 0.0027 17.1 0.0 1.2 1 0 0 1 1 1 1 Probable transposase Methyltransf_18 PF12847.2 gi|452208291|ref|YP_007488413.1| - 4.6e-16 59.3 0.1 6.9e-16 58.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|452208291|ref|YP_007488413.1| - 1.5e-11 44.2 0.0 5.1e-11 42.5 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain TehB PF03848.9 gi|452208291|ref|YP_007488413.1| - 9.1e-11 41.2 0.0 1e-10 41.1 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_31 PF13847.1 gi|452208291|ref|YP_007488413.1| - 3.7e-10 39.5 0.0 4.4e-10 39.3 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|452208291|ref|YP_007488413.1| - 5e-10 39.7 0.0 8.8e-10 38.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|452208291|ref|YP_007488413.1| - 7.7e-10 38.8 0.8 4.4e-09 36.3 0.5 2.0 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|452208291|ref|YP_007488413.1| - 1.1e-08 35.4 0.0 2e-08 34.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|452208291|ref|YP_007488413.1| - 1.2e-08 35.2 0.0 1.8e-08 34.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|452208291|ref|YP_007488413.1| - 2.4e-07 30.2 0.0 8.9e-07 28.4 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase small domain Ubie_methyltran PF01209.13 gi|452208291|ref|YP_007488413.1| - 5.8e-07 28.8 0.0 8.6e-07 28.3 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family NodS PF05401.6 gi|452208291|ref|YP_007488413.1| - 0.00016 21.0 0.0 0.00037 19.9 0.0 1.5 1 1 1 2 2 2 1 Nodulation protein S (NodS) TPMT PF05724.6 gi|452208291|ref|YP_007488413.1| - 0.0033 16.8 0.0 0.004 16.6 0.0 1.2 1 0 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) PCMT PF01135.14 gi|452208291|ref|YP_007488413.1| - 0.012 15.1 0.0 0.017 14.6 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_15 PF09445.5 gi|452208291|ref|YP_007488413.1| - 0.023 14.2 0.0 0.03 13.8 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase DUF4350 PF14258.1 gi|452208291|ref|YP_007488413.1| - 0.043 14.0 1.8 0.66 10.2 0.3 3.0 2 1 0 2 2 2 0 Domain of unknown function (DUF4350) 3HCDH_N PF02737.13 gi|452208291|ref|YP_007488413.1| - 0.049 13.2 0.0 0.069 12.7 0.0 1.2 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CMAS PF02353.15 gi|452208291|ref|YP_007488413.1| - 0.11 11.5 0.0 0.15 11.0 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase MCPsignal PF00015.16 gi|452208292|ref|YP_007488414.1| - 2.3e-43 148.2 68.8 3.3e-43 147.7 24.8 3.9 1 1 3 4 4 4 2 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.20 gi|452208292|ref|YP_007488414.1| - 0.00068 19.7 0.4 0.00068 19.7 0.3 5.7 5 1 1 6 6 6 1 HAMP domain DUF948 PF06103.6 gi|452208292|ref|YP_007488414.1| - 0.0024 17.7 30.7 0.12 12.2 0.5 6.3 4 1 1 5 5 5 2 Bacterial protein of unknown function (DUF948) ADIP PF11559.3 gi|452208292|ref|YP_007488414.1| - 0.017 14.9 0.3 0.017 14.9 0.2 3.7 4 1 0 4 4 4 0 Afadin- and alpha -actinin-Binding AAA_23 PF13476.1 gi|452208292|ref|YP_007488414.1| - 0.9 9.8 6.5 0.72 10.1 0.0 2.8 2 1 0 2 2 2 0 AAA domain AAA_27 PF13514.1 gi|452208292|ref|YP_007488414.1| - 2.4 5.7 52.1 3.6 5.1 36.1 1.1 1 0 0 1 1 1 0 AAA domain Myosin_tail_1 PF01576.14 gi|452208292|ref|YP_007488414.1| - 2.9 5.5 37.7 15 3.1 26.1 1.9 1 1 0 1 1 1 0 Myosin tail TPR_MLP1_2 PF07926.7 gi|452208292|ref|YP_007488414.1| - 4.7 6.9 38.2 1.1 8.9 4.1 4.7 3 1 1 4 4 4 0 TPR/MLP1/MLP2-like protein AAA_13 PF13166.1 gi|452208292|ref|YP_007488414.1| - 5 5.4 34.6 9.7 4.5 6.0 3.0 1 1 1 2 2 2 0 AAA domain DUF972 PF06156.8 gi|452208292|ref|YP_007488414.1| - 5.7 7.3 19.3 4.9 7.5 0.2 4.5 3 1 1 4 4 4 0 Protein of unknown function (DUF972) NPV_P10 PF05531.7 gi|452208292|ref|YP_007488414.1| - 9.3 6.5 30.0 2.3 8.5 0.3 6.4 4 2 3 7 7 7 0 Nucleopolyhedrovirus P10 protein PAS_9 PF13426.1 gi|452208293|ref|YP_007488415.1| - 1e-42 144.6 0.5 1.4e-27 96.0 0.0 4.1 4 0 0 4 4 4 3 PAS domain PAS_4 PF08448.5 gi|452208293|ref|YP_007488415.1| - 8.6e-22 77.2 11.0 3.2e-10 40.0 0.1 4.0 3 0 0 3 3 3 3 PAS fold PAS PF00989.19 gi|452208293|ref|YP_007488415.1| - 9.2e-22 76.9 0.3 2.3e-12 46.6 0.0 4.0 4 0 0 4 4 4 2 PAS fold PAS_3 PF08447.6 gi|452208293|ref|YP_007488415.1| - 1.7e-21 76.0 0.1 6.1e-11 42.2 0.0 3.1 3 0 0 3 3 3 2 PAS fold Response_reg PF00072.19 gi|452208293|ref|YP_007488415.1| - 2.1e-21 76.0 0.0 5.5e-21 74.6 0.0 1.7 1 0 0 1 1 1 1 Response regulator receiver domain GAF_3 PF13492.1 gi|452208293|ref|YP_007488415.1| - 7e-13 48.8 0.3 9.2e-12 45.1 0.1 2.6 2 0 0 2 2 2 1 GAF domain GAF_2 PF13185.1 gi|452208293|ref|YP_007488415.1| - 1.9e-10 41.4 7.7 9.6e-10 39.1 1.0 3.7 3 1 0 3 3 3 1 GAF domain PAS_8 PF13188.1 gi|452208293|ref|YP_007488415.1| - 3.5e-09 36.1 0.1 7e-05 22.5 0.0 3.8 3 0 0 3 3 3 2 PAS domain GAF PF01590.21 gi|452208293|ref|YP_007488415.1| - 4.2e-05 23.7 0.6 0.00018 21.6 0.4 2.1 1 0 0 1 1 1 1 GAF domain OKR_DC_1_N PF03709.10 gi|452208293|ref|YP_007488415.1| - 0.017 15.1 0.0 0.074 13.1 0.0 2.1 2 0 0 2 2 2 0 Orn/Lys/Arg decarboxylase, N-terminal domain PAS_7 PF12860.2 gi|452208293|ref|YP_007488415.1| - 7.5 6.6 7.9 12 5.9 0.0 4.3 3 2 1 4 4 4 0 PAS fold BPD_transp_2 PF02653.11 gi|452208294|ref|YP_007488416.1| - 2.2e-38 131.7 30.5 2.2e-38 131.7 20.7 1.3 1 1 0 1 1 1 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.11 gi|452208295|ref|YP_007488417.1| - 5.7e-38 130.4 33.7 5.7e-38 130.4 23.4 1.7 2 0 0 2 2 2 1 Branched-chain amino acid transport system / permease component ABC_tran PF00005.22 gi|452208296|ref|YP_007488418.1| - 1.1e-45 155.2 0.0 3.2e-29 101.9 0.0 2.3 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|452208296|ref|YP_007488418.1| - 6.7e-10 39.3 0.4 2.8e-07 30.8 0.2 2.6 2 1 0 2 2 2 1 AAA domain AAA_10 PF12846.2 gi|452208296|ref|YP_007488418.1| - 6.9e-05 22.4 0.8 1.4 8.2 0.1 3.2 3 0 0 3 3 3 3 AAA-like domain AAA_29 PF13555.1 gi|452208296|ref|YP_007488418.1| - 0.0036 16.8 0.0 0.012 15.1 0.0 1.8 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|452208296|ref|YP_007488418.1| - 0.014 14.4 0.0 3.2 6.7 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain AAA_25 PF13481.1 gi|452208296|ref|YP_007488418.1| - 0.016 14.6 0.0 0.48 9.7 0.0 2.4 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.1 gi|452208296|ref|YP_007488418.1| - 0.041 14.2 0.0 0.08 13.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|452208296|ref|YP_007488418.1| - 0.06 12.5 0.0 0.14 11.3 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_22 PF13401.1 gi|452208296|ref|YP_007488418.1| - 0.061 13.4 0.1 4.5 7.4 0.0 2.5 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.1 gi|452208296|ref|YP_007488418.1| - 0.15 11.9 0.0 1.2 9.0 0.0 2.4 2 0 0 2 2 2 0 AAA domain Bmp PF02608.9 gi|452208297|ref|YP_007488419.1| - 6e-42 143.4 0.0 8e-42 143.0 0.0 1.0 1 0 0 1 1 1 1 Basic membrane protein TAT_signal PF10518.4 gi|452208297|ref|YP_007488419.1| - 3.1e-05 23.6 0.9 7.9e-05 22.3 0.6 1.7 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence DUF4253 PF14062.1 gi|452208297|ref|YP_007488419.1| - 0.071 12.7 1.2 1.3 8.6 0.1 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4253) Transthyretin PF00576.16 gi|452208298|ref|YP_007488420.1| - 1.4e-36 124.7 0.0 1.6e-36 124.6 0.0 1.0 1 0 0 1 1 1 1 HIUase/Transthyretin family Uricase PF01014.13 gi|452208299|ref|YP_007488421.1| - 7.8e-37 126.4 0.0 8.3e-19 68.0 0.0 2.0 2 0 0 2 2 2 2 Uricase OHCU_decarbox PF09349.5 gi|452208300|ref|YP_007488422.1| - 1.2e-49 168.6 0.5 1.4e-49 168.4 0.3 1.0 1 0 0 1 1 1 1 OHCU decarboxylase DUF1470 PF07336.6 gi|452208300|ref|YP_007488422.1| - 0.0075 16.6 0.3 0.017 15.4 0.2 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF1470) L27_1 PF09058.5 gi|452208300|ref|YP_007488422.1| - 0.074 12.9 0.1 0.16 11.8 0.1 1.6 1 0 0 1 1 1 0 L27_1 Amidohydro_4 PF13147.1 gi|452208301|ref|YP_007488423.1| - 7.3e-27 95.0 8.4 1.1e-26 94.5 5.8 1.3 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_5 PF13594.1 gi|452208301|ref|YP_007488423.1| - 2.7e-15 55.9 3.2 6.8e-15 54.6 1.8 2.1 2 0 0 2 2 2 1 Amidohydrolase Amidohydro_1 PF01979.15 gi|452208301|ref|YP_007488423.1| - 1.1e-14 54.8 0.2 1.5e-05 24.8 0.1 3.2 2 1 1 3 3 3 3 Amidohydrolase family Amidohydro_3 PF07969.6 gi|452208301|ref|YP_007488423.1| - 6.9e-11 41.9 8.2 3.6e-09 36.3 0.5 2.2 1 1 0 2 2 2 2 Amidohydrolase family NTP_transf_3 PF12804.2 gi|452208302|ref|YP_007488424.1| - 5.7e-35 120.7 2.2 7e-35 120.4 1.5 1.0 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.14 gi|452208302|ref|YP_007488424.1| - 0.00028 20.4 0.1 0.00038 20.0 0.0 1.2 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Amidohydro_1 PF01979.15 gi|452208303|ref|YP_007488425.1| - 1.9e-45 155.9 2.4 2.3e-45 155.6 1.6 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|452208303|ref|YP_007488425.1| - 3.1e-13 49.3 0.0 9.4e-13 47.7 0.0 1.9 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_4 PF13147.1 gi|452208303|ref|YP_007488425.1| - 7.1e-13 49.2 14.5 7.1e-13 49.2 10.0 1.6 2 0 0 2 2 2 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|452208303|ref|YP_007488425.1| - 2.7e-11 43.3 7.1 1.2e-09 37.8 3.1 2.4 2 1 0 2 2 2 2 Amidohydrolase family FAD_binding_5 PF00941.16 gi|452208304|ref|YP_007488426.1| - 7.5e-43 145.9 0.0 1.2e-42 145.3 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain in molybdopterin dehydrogenase CO_deh_flav_C PF03450.12 gi|452208304|ref|YP_007488426.1| - 4.3e-15 55.5 0.4 7.9e-15 54.6 0.3 1.4 1 0 0 1 1 1 1 CO dehydrogenase flavoprotein C-terminal domain HEAT_2 PF13646.1 gi|452208304|ref|YP_007488426.1| - 0.011 16.0 0.6 0.039 14.2 0.0 2.1 2 0 0 2 2 2 0 HEAT repeats Ald_Xan_dh_C2 PF02738.13 gi|452208305|ref|YP_007488427.1| - 1.7e-139 465.6 0.7 2e-139 465.4 0.5 1.1 1 0 0 1 1 1 1 Molybdopterin-binding domain of aldehyde dehydrogenase Ald_Xan_dh_C PF01315.17 gi|452208305|ref|YP_007488427.1| - 2.3e-29 101.7 0.1 6.7e-29 100.2 0.1 1.9 1 0 0 1 1 1 1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain DUF1652 PF07865.6 gi|452208305|ref|YP_007488427.1| - 0.025 14.1 0.1 0.076 12.6 0.0 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF1652) Fer2_2 PF01799.15 gi|452208306|ref|YP_007488428.1| - 4.9e-30 103.2 0.0 7.8e-30 102.6 0.0 1.3 1 0 0 1 1 1 1 [2Fe-2S] binding domain Fer2 PF00111.22 gi|452208306|ref|YP_007488428.1| - 2.2e-08 33.7 1.3 2.2e-08 33.7 0.9 2.3 2 1 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer2_4 PF13510.1 gi|452208306|ref|YP_007488428.1| - 2e-06 27.5 0.4 8.7e-06 25.4 0.2 2.1 1 1 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Sigma70_r3 PF04539.11 gi|452208306|ref|YP_007488428.1| - 0.034 14.0 0.0 0.067 13.0 0.0 1.5 1 0 0 1 1 1 0 Sigma-70 region 3 XdhC_C PF13478.1 gi|452208307|ref|YP_007488429.1| - 1.3e-28 99.9 0.1 3.1e-28 98.7 0.0 1.6 2 0 0 2 2 2 1 XdhC Rossmann domain XdhC_CoxI PF02625.11 gi|452208307|ref|YP_007488429.1| - 2e-14 52.9 3.0 4e-13 48.7 0.5 2.7 2 0 0 2 2 2 2 XdhC and CoxI family Xan_ur_permease PF00860.15 gi|452208308|ref|YP_007488430.1| - 1.2e-92 310.4 43.9 1.7e-92 309.9 30.4 1.2 1 0 0 1 1 1 1 Permease family DUF3830 PF12903.2 gi|452208309|ref|YP_007488431.1| - 1.8e-42 144.1 0.0 2.1e-42 143.9 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3830) Peptidase_M20 PF01546.23 gi|452208310|ref|YP_007488432.1| - 5.4e-20 71.7 0.8 7.9e-20 71.1 0.6 1.2 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M28 PF04389.12 gi|452208310|ref|YP_007488432.1| - 4.1e-08 33.1 0.3 1.1e-07 31.7 0.1 1.8 2 0 0 2 2 2 1 Peptidase family M28 M20_dimer PF07687.9 gi|452208310|ref|YP_007488432.1| - 1.3e-06 28.1 1.9 2.7e-06 27.0 0.1 2.1 2 0 0 2 2 2 1 Peptidase dimerisation domain IclR PF01614.13 gi|452208311|ref|YP_007488433.1| - 5e-32 110.3 0.1 1.5e-31 108.7 0.0 1.8 2 0 0 2 2 2 1 Bacterial transcriptional regulator HTH_IclR PF09339.5 gi|452208311|ref|YP_007488433.1| - 2.1e-10 39.9 0.2 4.9e-10 38.8 0.1 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_20 PF12840.2 gi|452208311|ref|YP_007488433.1| - 5.6e-08 32.4 0.1 1.8e-07 30.8 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|452208311|ref|YP_007488433.1| - 2.7e-07 30.1 0.0 6.9e-07 28.8 0.0 1.6 2 0 0 2 2 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|452208311|ref|YP_007488433.1| - 1.2e-06 28.0 0.2 6.1e-06 25.8 0.0 2.3 3 0 0 3 3 3 1 MarR family TrmB PF01978.14 gi|452208311|ref|YP_007488433.1| - 6.5e-06 25.7 0.0 0.00026 20.6 0.0 3.0 3 0 0 3 3 3 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|452208311|ref|YP_007488433.1| - 2.3e-05 23.9 0.0 5e-05 22.9 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.7 gi|452208311|ref|YP_007488433.1| - 0.00014 21.4 0.0 0.0005 19.6 0.0 1.9 2 0 0 2 2 2 1 HTH domain HTH_24 PF13412.1 gi|452208311|ref|YP_007488433.1| - 0.00021 20.6 0.0 0.00051 19.3 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Fe_dep_repress PF01325.14 gi|452208311|ref|YP_007488433.1| - 0.00086 19.1 0.0 0.0023 17.8 0.0 1.7 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_10 PF04967.7 gi|452208311|ref|YP_007488433.1| - 0.0025 17.3 0.0 0.0062 16.0 0.0 1.6 1 0 0 1 1 1 1 HTH DNA binding domain HTH_27 PF13463.1 gi|452208311|ref|YP_007488433.1| - 0.013 15.7 0.3 0.058 13.7 0.0 2.1 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_DeoR PF08220.7 gi|452208311|ref|YP_007488433.1| - 0.024 14.1 0.0 0.069 12.6 0.0 1.7 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_34 PF13601.1 gi|452208311|ref|YP_007488433.1| - 0.028 14.4 0.0 0.068 13.2 0.0 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_23 PF13384.1 gi|452208311|ref|YP_007488433.1| - 0.047 13.3 0.0 0.15 11.7 0.0 1.9 2 0 0 2 2 2 0 Homeodomain-like domain DDE_Tnp_IS240 PF13610.1 gi|452208312|ref|YP_007488434.1| - 8.1e-17 61.4 0.3 1.1e-16 61.0 0.2 1.1 1 0 0 1 1 1 1 DDE domain DDE_Tnp_IS66 PF03050.9 gi|452208312|ref|YP_007488434.1| - 7.7e-05 22.0 0.1 0.00021 20.6 0.0 1.7 1 1 0 1 1 1 1 Transposase IS66 family rve PF00665.21 gi|452208312|ref|YP_007488434.1| - 0.00036 20.6 0.2 0.00059 19.9 0.2 1.4 1 0 0 1 1 1 1 Integrase core domain DDE_3 PF13358.1 gi|452208312|ref|YP_007488434.1| - 0.019 14.7 0.0 0.042 13.5 0.0 1.7 1 1 0 1 1 1 0 DDE superfamily endonuclease HTH_28 PF13518.1 gi|452208312|ref|YP_007488434.1| - 0.026 14.5 0.0 1.1 9.3 0.0 2.5 2 0 0 2 2 2 0 Helix-turn-helix domain Epimerase PF01370.16 gi|452208314|ref|YP_007488436.1| - 5.8e-45 153.5 0.9 6.9e-45 153.3 0.6 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|452208314|ref|YP_007488436.1| - 1e-13 50.8 0.4 1.4e-13 50.4 0.3 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.14 gi|452208314|ref|YP_007488436.1| - 1.4e-12 46.9 0.9 7.4e-12 44.5 0.6 2.0 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.10 gi|452208314|ref|YP_007488436.1| - 3.2e-11 42.6 0.1 2.8e-08 33.0 0.0 2.9 2 1 0 2 2 2 2 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.7 gi|452208314|ref|YP_007488436.1| - 1.1e-10 40.8 0.1 7.6e-09 34.8 0.0 2.1 2 0 0 2 2 2 1 Male sterility protein adh_short PF00106.20 gi|452208314|ref|YP_007488436.1| - 1.7e-05 24.8 0.8 0.0039 17.1 0.1 2.6 2 1 1 3 3 3 2 short chain dehydrogenase NAD_binding_10 PF13460.1 gi|452208314|ref|YP_007488436.1| - 2.7e-05 24.2 0.5 4.7e-05 23.4 0.4 1.4 1 0 0 1 1 1 1 NADH(P)-binding NmrA PF05368.8 gi|452208314|ref|YP_007488436.1| - 0.043 13.0 0.3 1.9 7.7 0.0 2.4 2 0 0 2 2 2 0 NmrA-like family KR PF08659.5 gi|452208314|ref|YP_007488436.1| - 0.044 13.4 0.2 0.36 10.4 0.1 2.2 1 1 1 2 2 2 0 KR domain Pribosyltran PF00156.22 gi|452208315|ref|YP_007488437.1| - 2.2e-23 82.3 0.0 3.7e-23 81.6 0.0 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain HTH_7 PF02796.10 gi|452208315|ref|YP_007488437.1| - 0.00051 19.8 0.0 0.001 18.8 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase HTH_23 PF13384.1 gi|452208315|ref|YP_007488437.1| - 0.0051 16.4 0.0 0.011 15.3 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_11 PF08279.7 gi|452208315|ref|YP_007488437.1| - 0.015 14.9 0.1 0.042 13.4 0.1 1.7 1 0 0 1 1 1 0 HTH domain HTH_28 PF13518.1 gi|452208315|ref|YP_007488437.1| - 0.14 12.1 0.2 0.69 9.9 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain CCG PF02754.11 gi|452208316|ref|YP_007488438.1| - 6.4e-21 74.1 1.3 1.1e-09 38.1 0.1 2.9 3 0 0 3 3 3 2 Cysteine-rich domain Fer4_8 PF13183.1 gi|452208316|ref|YP_007488438.1| - 1.5e-07 31.2 7.5 1.5e-07 31.2 5.2 3.0 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|452208316|ref|YP_007488438.1| - 3.8e-06 27.1 7.9 3.8e-06 27.1 5.5 3.3 3 1 0 3 3 3 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|452208316|ref|YP_007488438.1| - 9.4e-05 22.6 15.6 0.0016 18.6 8.6 3.5 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|452208316|ref|YP_007488438.1| - 0.00043 20.6 13.2 0.0022 18.3 0.2 3.8 4 0 0 4 4 4 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|452208316|ref|YP_007488438.1| - 0.00088 19.6 11.3 0.00088 19.6 7.8 2.8 3 1 0 3 3 3 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|452208316|ref|YP_007488438.1| - 0.012 15.3 20.7 0.013 15.3 9.9 3.5 3 1 1 4 4 4 0 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|452208316|ref|YP_007488438.1| - 0.017 15.8 16.0 0.02 15.5 7.5 3.4 3 1 1 4 4 4 0 4Fe-4S double cluster binding domain Fer4_21 PF14697.1 gi|452208316|ref|YP_007488438.1| - 0.34 10.8 13.4 0.35 10.7 0.6 3.3 4 0 0 4 4 4 0 4Fe-4S dicluster domain FAD_binding_2 PF00890.19 gi|452208317|ref|YP_007488439.1| - 6.6e-44 150.4 2.9 7.8e-44 150.1 2.0 1.0 1 0 0 1 1 1 1 FAD binding domain DAO PF01266.19 gi|452208317|ref|YP_007488439.1| - 1.5e-06 27.3 1.0 0.0029 16.5 0.6 2.4 2 0 0 2 2 2 2 FAD dependent oxidoreductase GIDA PF01134.17 gi|452208317|ref|YP_007488439.1| - 2.5e-05 23.3 0.2 2.5e-05 23.3 0.1 1.6 2 0 0 2 2 2 1 Glucose inhibited division protein A FAD_oxidored PF12831.2 gi|452208317|ref|YP_007488439.1| - 4.3e-05 22.7 1.1 4.3e-05 22.7 0.8 2.5 3 0 0 3 3 3 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|452208317|ref|YP_007488439.1| - 5.6e-05 23.1 0.0 0.0049 16.7 0.0 2.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|452208317|ref|YP_007488439.1| - 0.0001 21.4 0.4 0.00056 19.0 0.3 1.9 2 0 0 2 2 2 1 FAD binding domain NAD_binding_8 PF13450.1 gi|452208317|ref|YP_007488439.1| - 0.00058 19.8 1.5 0.029 14.3 0.5 2.6 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.9 gi|452208317|ref|YP_007488439.1| - 0.0032 15.9 0.1 0.053 11.9 0.1 2.2 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox PF00070.22 gi|452208317|ref|YP_007488439.1| - 0.0055 17.0 0.1 0.016 15.5 0.1 1.8 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_7 PF13241.1 gi|452208317|ref|YP_007488439.1| - 0.062 13.5 0.0 0.17 12.1 0.0 1.7 1 0 0 1 1 1 0 Putative NAD(P)-binding 3HCDH_N PF02737.13 gi|452208317|ref|YP_007488439.1| - 0.16 11.5 0.1 0.26 10.9 0.0 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DAO PF01266.19 gi|452208318|ref|YP_007488440.1| - 5.1e-64 216.4 1.6 7.6e-64 215.8 1.1 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|452208318|ref|YP_007488440.1| - 7.4e-09 34.9 5.9 3.3e-08 32.8 4.1 1.9 1 1 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.9 gi|452208318|ref|YP_007488440.1| - 8.4e-08 32.3 0.0 2.7e-05 24.1 0.0 2.2 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Fer2_BFD PF04324.10 gi|452208318|ref|YP_007488440.1| - 1.1e-07 31.8 1.5 2e-07 30.9 0.5 2.0 2 0 0 2 2 2 1 BFD-like [2Fe-2S] binding domain FAD_oxidored PF12831.2 gi|452208318|ref|YP_007488440.1| - 3e-05 23.2 6.0 0.00013 21.2 4.2 1.9 1 1 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|452208318|ref|YP_007488440.1| - 4.5e-05 22.6 8.6 0.00046 19.3 6.0 2.2 1 1 0 1 1 1 1 FAD binding domain Thi4 PF01946.12 gi|452208318|ref|YP_007488440.1| - 5.3e-05 22.4 3.5 0.017 14.1 0.3 2.3 2 0 0 2 2 2 2 Thi4 family 3HCDH_N PF02737.13 gi|452208318|ref|YP_007488440.1| - 0.0022 17.6 0.1 0.0037 16.9 0.1 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_8 PF13450.1 gi|452208318|ref|YP_007488440.1| - 0.0034 17.3 1.4 0.0082 16.1 0.3 2.2 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.22 gi|452208318|ref|YP_007488440.1| - 0.0045 17.3 1.3 0.014 15.7 0.2 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|452208318|ref|YP_007488440.1| - 0.0064 16.5 0.2 2.1 8.3 0.1 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase ApbA PF02558.11 gi|452208318|ref|YP_007488440.1| - 0.042 13.2 0.2 0.1 12.0 0.2 1.7 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA NAD_Gly3P_dh_N PF01210.18 gi|452208318|ref|YP_007488440.1| - 0.064 12.9 0.1 0.11 12.2 0.1 1.3 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_10 PF13460.1 gi|452208318|ref|YP_007488440.1| - 0.089 12.7 1.6 0.23 11.4 0.4 2.2 2 0 0 2 2 2 0 NADH(P)-binding PilZ PF07238.9 gi|452208318|ref|YP_007488440.1| - 0.096 12.7 0.1 2.9 7.9 0.0 2.6 3 0 0 3 3 2 0 PilZ domain TrkA_N PF02254.13 gi|452208318|ref|YP_007488440.1| - 0.11 12.5 0.2 0.24 11.4 0.2 1.6 1 0 0 1 1 1 0 TrkA-N domain HI0933_like PF03486.9 gi|452208318|ref|YP_007488440.1| - 0.12 10.8 0.7 0.19 10.1 0.1 1.6 2 0 0 2 2 2 0 HI0933-like protein NAD_binding_9 PF13454.1 gi|452208318|ref|YP_007488440.1| - 0.13 11.9 2.9 4.5 7.0 0.2 2.6 2 0 0 2 2 2 0 FAD-NAD(P)-binding Lycopene_cycl PF05834.7 gi|452208318|ref|YP_007488440.1| - 0.34 9.7 1.2 1.3 7.8 0.1 2.0 2 0 0 2 2 2 0 Lycopene cyclase protein GIDA PF01134.17 gi|452208318|ref|YP_007488440.1| - 0.49 9.2 2.6 1.9 7.2 0.5 2.1 2 0 0 2 2 2 0 Glucose inhibited division protein A FGGY_N PF00370.16 gi|452208319|ref|YP_007488441.1| - 8.7e-73 244.6 0.0 1.2e-72 244.2 0.0 1.2 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain FGGY_C PF02782.11 gi|452208319|ref|YP_007488441.1| - 7.7e-60 201.8 2.1 1.4e-59 201.1 1.4 1.4 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain BcrAD_BadFG PF01869.15 gi|452208319|ref|YP_007488441.1| - 0.0074 15.6 0.2 0.31 10.3 0.0 2.2 2 0 0 2 2 2 2 BadF/BadG/BcrA/BcrD ATPase family AAA_16 PF13191.1 gi|452208321|ref|YP_007488443.1| - 2.5e-11 43.9 0.7 1.5e-10 41.3 0.3 2.3 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|452208321|ref|YP_007488443.1| - 6.1e-05 23.1 0.0 0.00025 21.1 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|452208321|ref|YP_007488443.1| - 0.0041 16.5 0.1 0.079 12.3 0.0 2.8 3 0 0 3 3 3 1 AAA domain DUF3650 PF12368.3 gi|452208321|ref|YP_007488443.1| - 0.019 14.4 0.1 0.036 13.5 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3650) TrmB PF01978.14 gi|452208321|ref|YP_007488443.1| - 0.04 13.6 0.0 0.089 12.5 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|452208321|ref|YP_007488443.1| - 0.045 13.3 0.0 0.25 10.9 0.0 2.4 2 0 0 2 2 2 0 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|452208321|ref|YP_007488443.1| - 0.066 12.6 0.0 0.3 10.5 0.0 2.2 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding AAA_19 PF13245.1 gi|452208321|ref|YP_007488443.1| - 0.21 11.3 1.4 0.47 10.2 0.0 2.2 2 0 0 2 2 2 0 Part of AAA domain FKBP_C PF00254.23 gi|452208322|ref|YP_007488444.1| - 9.6e-23 80.0 0.0 1.5e-22 79.4 0.0 1.3 1 0 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase DUF2187 PF09953.4 gi|452208322|ref|YP_007488444.1| - 0.096 12.4 0.0 0.18 11.5 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2187) HTH_24 PF13412.1 gi|452208323|ref|YP_007488445.1| - 1.7e-16 59.2 0.1 2.7e-16 58.6 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|452208323|ref|YP_007488445.1| - 3.2e-13 48.9 2.2 7.2e-13 47.8 1.3 1.7 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.7 gi|452208323|ref|YP_007488445.1| - 1.4e-07 31.0 0.0 2.3e-07 30.3 0.0 1.3 1 0 0 1 1 1 1 HTH domain MarR_2 PF12802.2 gi|452208323|ref|YP_007488445.1| - 2.8e-07 30.1 0.0 4.9e-07 29.3 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|452208323|ref|YP_007488445.1| - 5.6e-06 26.0 0.0 1e-05 25.2 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|452208323|ref|YP_007488445.1| - 1.3e-05 24.7 0.0 2.2e-05 23.9 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_5 PF01022.15 gi|452208323|ref|YP_007488445.1| - 1.7e-05 24.3 0.0 2.6e-05 23.7 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Fe_dep_repress PF01325.14 gi|452208323|ref|YP_007488445.1| - 2e-05 24.4 0.0 3.3e-05 23.7 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_27 PF13463.1 gi|452208323|ref|YP_007488445.1| - 3.1e-05 24.2 0.1 0.00016 21.9 0.0 2.0 2 0 0 2 2 2 1 Winged helix DNA-binding domain Sigma70_r4_2 PF08281.7 gi|452208323|ref|YP_007488445.1| - 7.4e-05 22.1 0.1 0.00013 21.3 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 Rrf2 PF02082.15 gi|452208323|ref|YP_007488445.1| - 9e-05 22.5 0.0 0.00022 21.2 0.0 1.6 2 0 0 2 2 1 1 Transcriptional regulator HTH_23 PF13384.1 gi|452208323|ref|YP_007488445.1| - 0.00032 20.2 0.1 0.00073 19.1 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_DeoR PF08220.7 gi|452208323|ref|YP_007488445.1| - 0.00049 19.5 0.1 0.0024 17.3 0.0 1.9 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain HTH_28 PF13518.1 gi|452208323|ref|YP_007488445.1| - 0.001 18.9 0.1 0.0017 18.3 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.17 gi|452208323|ref|YP_007488445.1| - 0.0014 18.2 0.0 0.003 17.2 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_Tnp_ISL3 PF13542.1 gi|452208323|ref|YP_007488445.1| - 0.0042 16.2 0.1 0.0093 15.1 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 GntR PF00392.16 gi|452208323|ref|YP_007488445.1| - 0.0052 16.1 0.0 0.011 15.2 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_38 PF13936.1 gi|452208323|ref|YP_007488445.1| - 0.0091 15.5 0.5 0.019 14.5 0.2 1.7 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_10 PF04967.7 gi|452208323|ref|YP_007488445.1| - 0.0097 15.4 0.1 0.016 14.8 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain HTH_12 PF08461.5 gi|452208323|ref|YP_007488445.1| - 0.014 15.0 0.3 0.065 12.9 0.2 2.2 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain TrmB PF01978.14 gi|452208323|ref|YP_007488445.1| - 0.019 14.6 0.0 0.039 13.6 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_29 PF13551.1 gi|452208323|ref|YP_007488445.1| - 0.032 14.3 0.0 0.049 13.7 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn helix HTH_Mga PF08280.6 gi|452208323|ref|YP_007488445.1| - 0.038 13.7 0.0 0.063 13.0 0.0 1.3 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain HTH_36 PF13730.1 gi|452208323|ref|YP_007488445.1| - 0.044 13.9 0.0 0.073 13.2 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_1 PF00126.22 gi|452208323|ref|YP_007488445.1| - 0.055 13.2 0.0 0.11 12.2 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_Crp_2 PF13545.1 gi|452208323|ref|YP_007488445.1| - 0.063 13.0 0.0 0.13 12.0 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Sigma70_r4 PF04545.11 gi|452208323|ref|YP_007488445.1| - 0.11 11.8 0.1 0.17 11.2 0.1 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_CodY PF08222.6 gi|452208323|ref|YP_007488445.1| - 0.11 11.7 0.2 0.2 11.0 0.2 1.3 1 0 0 1 1 1 0 CodY helix-turn-helix domain Phage_pRha PF09669.5 gi|452208323|ref|YP_007488445.1| - 0.13 12.6 0.0 0.2 12.0 0.0 1.3 1 0 0 1 1 1 0 Phage regulatory protein Rha (Phage_pRha) DUF2250 PF10007.4 gi|452208323|ref|YP_007488445.1| - 0.15 11.9 0.0 0.96 9.3 0.0 1.9 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) Amidohydro_1 PF01979.15 gi|452208324|ref|YP_007488446.1| - 1.8e-24 86.9 0.0 1.9e-16 60.6 0.0 2.0 2 0 0 2 2 2 2 Amidohydrolase family Amidohydro_4 PF13147.1 gi|452208324|ref|YP_007488446.1| - 1.2e-08 35.3 12.0 3.9e-08 33.6 8.3 1.8 1 1 0 1 1 1 1 Amidohydrolase A_deaminase PF00962.17 gi|452208324|ref|YP_007488446.1| - 4.4e-08 32.4 0.0 6.1e-08 31.9 0.0 1.1 1 0 0 1 1 1 1 Adenosine/AMP deaminase Amidohydro_3 PF07969.6 gi|452208324|ref|YP_007488446.1| - 3.1e-07 29.9 7.2 1.7e-06 27.5 1.1 2.2 1 1 0 2 2 2 2 Amidohydrolase family Amidohydro_5 PF13594.1 gi|452208324|ref|YP_007488446.1| - 9.3e-07 28.5 0.0 1.8e-06 27.6 0.0 1.5 1 0 0 1 1 1 1 Amidohydrolase DUF1330 PF07045.6 gi|452208324|ref|YP_007488446.1| - 0.016 15.0 0.2 2.5 8.0 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1330) DDE_Tnp_IS240 PF13610.1 gi|452208325|ref|YP_007488447.1| - 1.2e-15 57.7 0.2 1.6e-15 57.3 0.1 1.2 1 0 0 1 1 1 1 DDE domain DDE_Tnp_IS66 PF03050.9 gi|452208325|ref|YP_007488447.1| - 0.0003 20.1 0.4 0.00072 18.8 0.1 1.8 1 1 0 1 1 1 1 Transposase IS66 family rve PF00665.21 gi|452208325|ref|YP_007488447.1| - 0.0044 17.1 0.2 0.0082 16.2 0.1 1.5 1 0 0 1 1 1 1 Integrase core domain DDE_3 PF13358.1 gi|452208325|ref|YP_007488447.1| - 0.02 14.6 0.0 0.054 13.2 0.0 1.7 1 1 0 1 1 1 0 DDE superfamily endonuclease HTH_28 PF13518.1 gi|452208325|ref|YP_007488447.1| - 0.039 13.9 0.0 2.4 8.2 0.0 2.5 2 1 0 2 2 2 0 Helix-turn-helix domain TMEM71 PF15121.1 gi|452208325|ref|YP_007488447.1| - 0.091 12.5 0.2 0.22 11.2 0.1 1.6 1 0 0 1 1 1 0 TMEM71 protein family DDE_Tnp_1 PF01609.16 gi|452208325|ref|YP_007488447.1| - 0.39 10.2 2.6 12 5.3 0.3 2.2 1 1 1 2 2 2 0 Transposase DDE domain DUF4242 PF14026.1 gi|452208326|ref|YP_007488448.1| - 1.1e-20 73.4 0.0 1.2e-20 73.3 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF4242) Sigma70_r3 PF04539.11 gi|452208326|ref|YP_007488448.1| - 0.13 12.1 1.6 0.27 11.1 0.8 1.7 1 1 1 2 2 2 0 Sigma-70 region 3 NMT1 PF09084.6 gi|452208327|ref|YP_007488449.1| - 2.2e-32 112.3 0.0 3.4e-32 111.7 0.0 1.3 1 0 0 1 1 1 1 NMT1/THI5 like NMT1_2 PF13379.1 gi|452208327|ref|YP_007488449.1| - 1.2e-07 31.4 0.5 1.6e-06 27.7 0.3 2.1 1 1 0 1 1 1 1 NMT1-like family Phosphonate-bd PF12974.2 gi|452208327|ref|YP_007488449.1| - 9.2e-06 25.2 2.0 1.6e-05 24.4 1.1 1.5 1 1 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein PBP_like PF12727.2 gi|452208327|ref|YP_007488449.1| - 1.2 8.1 4.7 0.69 8.8 0.1 2.4 2 1 1 3 3 3 0 PBP superfamily domain NMT1 PF09084.6 gi|452208328|ref|YP_007488450.1| - 4.8e-12 45.9 0.0 7.7e-12 45.2 0.0 1.3 1 0 0 1 1 1 1 NMT1/THI5 like SBP_bac_3 PF00497.15 gi|452208328|ref|YP_007488450.1| - 2.1e-06 27.1 0.0 3.6e-06 26.3 0.0 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 Phosphonate-bd PF12974.2 gi|452208328|ref|YP_007488450.1| - 1.2e-05 24.8 0.0 5.3e-05 22.7 0.0 2.0 1 1 1 2 2 2 1 ABC transporter, phosphonate, periplasmic substrate-binding protein NMT1 PF09084.6 gi|452208329|ref|YP_007488451.1| - 1.8e-09 37.5 0.0 1.2e-07 31.5 0.0 2.8 1 1 0 1 1 1 1 NMT1/THI5 like NMT1_2 PF13379.1 gi|452208329|ref|YP_007488451.1| - 0.0041 16.5 0.0 2.8 7.2 0.0 2.6 2 1 0 2 2 2 2 NMT1-like family SBP_bac_3 PF00497.15 gi|452208329|ref|YP_007488451.1| - 0.014 14.6 0.0 0.024 13.9 0.0 1.5 1 0 0 1 1 1 0 Bacterial extracellular solute-binding proteins, family 3 Cupin_2 PF07883.6 gi|452208330|ref|YP_007488452.1| - 4.1e-19 67.8 0.1 5.7e-19 67.3 0.1 1.2 1 0 0 1 1 1 1 Cupin domain Cupin_1 PF00190.17 gi|452208330|ref|YP_007488452.1| - 1.3e-05 24.6 0.0 1.7e-05 24.3 0.0 1.3 1 0 0 1 1 1 1 Cupin AraC_binding PF02311.14 gi|452208330|ref|YP_007488452.1| - 5.8e-05 22.7 0.0 7.6e-05 22.4 0.0 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_3 PF05899.7 gi|452208330|ref|YP_007488452.1| - 0.0024 17.2 0.0 0.0037 16.6 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF861) DUF1637 PF07847.7 gi|452208330|ref|YP_007488452.1| - 0.012 15.0 0.0 1.6 8.0 0.0 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1637) MannoseP_isomer PF01050.13 gi|452208330|ref|YP_007488452.1| - 0.06 12.9 0.0 0.073 12.6 0.0 1.1 1 0 0 1 1 1 0 Mannose-6-phosphate isomerase Auxin_BP PF02041.11 gi|452208330|ref|YP_007488452.1| - 0.069 12.5 0.0 0.09 12.2 0.0 1.2 1 0 0 1 1 1 0 Auxin binding protein Cupin_6 PF12852.2 gi|452208330|ref|YP_007488452.1| - 0.081 12.5 0.0 0.086 12.4 0.0 1.1 1 0 0 1 1 1 0 Cupin AFOR_C PF01314.13 gi|452208331|ref|YP_007488453.1| - 3e-78 263.1 2.3 1.2e-77 261.1 1.6 1.8 1 1 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.10 gi|452208331|ref|YP_007488453.1| - 2.8e-48 163.9 0.0 4.4e-48 163.2 0.0 1.3 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain Glyoxalase PF00903.20 gi|452208332|ref|YP_007488454.1| - 1.5e-08 34.7 0.2 2.2e-08 34.1 0.2 1.3 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_2 PF12681.2 gi|452208332|ref|YP_007488454.1| - 5.9e-08 33.2 0.4 7.4e-08 32.9 0.3 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain AFOR_C PF01314.13 gi|452208333|ref|YP_007488455.1| - 5.6e-122 407.1 1.5 6.8e-122 406.8 1.1 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.10 gi|452208333|ref|YP_007488455.1| - 1.3e-79 266.2 0.0 1.9e-79 265.6 0.0 1.3 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain Arylsulfotran_2 PF14269.1 gi|452208334|ref|YP_007488456.1| - 3.6e-10 39.4 0.0 2.7e-09 36.6 0.0 2.3 1 1 0 1 1 1 1 Arylsulfotransferase (ASST) Arylsulfotrans PF05935.6 gi|452208334|ref|YP_007488456.1| - 3.8e-07 28.9 0.1 7.7e-07 27.9 0.1 1.5 1 0 0 1 1 1 1 Arylsulfotransferase (ASST) NHL PF01436.16 gi|452208334|ref|YP_007488456.1| - 0.0073 16.2 0.5 1.8 8.6 0.0 3.9 4 0 0 4 4 4 1 NHL repeat Cupin_1 PF00190.17 gi|452208334|ref|YP_007488456.1| - 0.075 12.4 0.0 0.15 11.5 0.0 1.6 1 1 0 1 1 1 0 Cupin UCR_Fe-S_N PF10399.4 gi|452208334|ref|YP_007488456.1| - 1.3 8.2 0.0 1.3 8.2 0.0 2.4 2 0 0 2 2 2 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal DJ-1_PfpI PF01965.19 gi|452208335|ref|YP_007488457.1| - 2.8e-14 52.8 0.1 6.6e-14 51.5 0.1 1.7 1 1 0 1 1 1 1 DJ-1/PfpI family DUF1469 PF07332.6 gi|452208336|ref|YP_007488458.1| - 0.092 12.4 4.9 0.18 11.5 3.4 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1469) ECH PF00378.15 gi|452208337|ref|YP_007488459.1| - 1.6e-47 161.7 0.0 1.7e-47 161.5 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family ThiS PF02597.15 gi|452208338|ref|YP_007488460.1| - 1.4e-12 47.8 0.0 1.6e-12 47.6 0.0 1.1 1 0 0 1 1 1 1 ThiS family TGT PF01702.13 gi|452208339|ref|YP_007488461.1| - 3e-45 154.3 0.0 3.8e-45 154.0 0.0 1.1 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase TGT_C1 PF14809.1 gi|452208339|ref|YP_007488461.1| - 0.044 13.5 0.0 0.62 9.9 0.0 2.4 1 1 0 1 1 1 0 C1 domain of tRNA-guanine transglycosylase dimerisation FRG1 PF06229.7 gi|452208339|ref|YP_007488461.1| - 0.12 11.8 0.1 0.33 10.3 0.0 1.7 2 0 0 2 2 2 0 FRG1-like family DUF1280 PF06918.9 gi|452208339|ref|YP_007488461.1| - 0.18 10.9 0.0 0.3 10.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1280) NikR_C PF08753.6 gi|452208340|ref|YP_007488462.1| - 2.9e-22 78.3 1.3 3.9e-22 77.9 0.9 1.2 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_1 PF01402.16 gi|452208340|ref|YP_007488462.1| - 9.4e-06 25.3 0.0 1.5e-05 24.6 0.0 1.3 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family G-patch_2 PF12656.2 gi|452208340|ref|YP_007488462.1| - 0.026 14.3 0.0 0.047 13.5 0.0 1.4 1 0 0 1 1 1 0 DExH-box splicing factor binding site CobA_CobO_BtuR PF02572.10 gi|452208341|ref|YP_007488463.1| - 1.2e-57 194.3 0.0 1.3e-57 194.1 0.0 1.0 1 0 0 1 1 1 1 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP IstB_IS21 PF01695.12 gi|452208341|ref|YP_007488463.1| - 0.015 14.7 1.2 0.75 9.1 0.0 2.6 2 1 1 3 3 3 0 IstB-like ATP binding protein CbiA PF01656.18 gi|452208341|ref|YP_007488463.1| - 0.043 13.2 0.1 0.072 12.4 0.1 1.4 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain DUF3767 PF12597.3 gi|452208342|ref|YP_007488464.1| - 0.2 11.3 1.0 0.25 11.0 0.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3767) DUF2244 PF10003.4 gi|452208342|ref|YP_007488464.1| - 9.6 5.5 6.4 11 5.3 4.4 1.1 1 0 0 1 1 1 0 Integral membrane protein (DUF2244) Usp PF00582.21 gi|452208343|ref|YP_007488465.1| - 3e-38 131.1 3.0 3.6e-38 130.9 2.1 1.1 1 0 0 1 1 1 1 Universal stress protein family DUF2786 PF10979.3 gi|452208343|ref|YP_007488465.1| - 0.00016 21.3 1.7 0.072 12.8 0.0 2.3 2 0 0 2 2 2 2 Protein of unknown function (DUF2786) ETF PF01012.16 gi|452208343|ref|YP_007488465.1| - 0.081 12.6 4.8 1.2 8.7 3.3 2.2 1 1 0 1 1 1 0 Electron transfer flavoprotein domain PIN_4 PF13638.1 gi|452208343|ref|YP_007488465.1| - 0.1 12.7 0.0 0.15 12.1 0.0 1.3 1 0 0 1 1 1 0 PIN domain SSF PF00474.12 gi|452208344|ref|YP_007488466.1| - 1.4e-51 175.4 35.1 1.9e-51 174.9 24.3 1.2 1 0 0 1 1 1 1 Sodium:solute symporter family DUF4212 PF13937.1 gi|452208345|ref|YP_007488467.1| - 6.5e-21 74.1 0.0 7.9e-21 73.8 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4212) DDE_Tnp_1 PF01609.16 gi|452208346|ref|YP_007488468.1| - 1.4e-11 44.3 0.8 2.7e-11 43.4 0.6 1.4 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_2 PF13586.1 gi|452208346|ref|YP_007488468.1| - 0.0045 17.1 0.4 0.076 13.2 0.0 2.4 3 0 0 3 3 3 1 Transposase DDE domain DUF1814 PF08843.6 gi|452208346|ref|YP_007488468.1| - 0.051 13.3 0.0 0.076 12.7 0.0 1.2 1 0 0 1 1 1 0 Nucleotidyl transferase of unknown function (DUF1814) DDE_Tnp_1_3 PF13612.1 gi|452208346|ref|YP_007488468.1| - 0.1 12.3 0.0 0.15 11.8 0.0 1.2 1 0 0 1 1 1 0 Transposase DDE domain AMP-binding PF00501.23 gi|452208347|ref|YP_007488469.1| - 5.6e-92 308.3 0.4 6.7e-92 308.0 0.3 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|452208347|ref|YP_007488469.1| - 1.3e-14 54.8 0.1 3e-14 53.7 0.1 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain ECH PF00378.15 gi|452208348|ref|YP_007488470.1| - 1.2e-44 152.3 0.2 1.4e-44 152.1 0.1 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family ECH_C PF13766.1 gi|452208348|ref|YP_007488470.1| - 0.02 15.0 0.1 0.11 12.6 0.0 1.9 2 0 0 2 2 2 0 2-enoyl-CoA Hydratase C-terminal region Thioredoxin PF00085.15 gi|452208349|ref|YP_007488471.1| - 1.5e-10 40.6 0.0 2.7e-10 39.8 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin HyaE PF07449.6 gi|452208349|ref|YP_007488471.1| - 0.0011 18.7 0.0 0.0025 17.6 0.0 1.6 1 1 0 1 1 1 1 Hydrogenase-1 expression protein HyaE Thioredoxin_2 PF13098.1 gi|452208349|ref|YP_007488471.1| - 0.0013 18.9 0.0 0.015 15.5 0.0 2.1 1 1 0 1 1 1 1 Thioredoxin-like domain PqqD PF05402.7 gi|452208349|ref|YP_007488471.1| - 0.68 9.9 2.9 28 4.8 0.0 3.4 4 0 0 4 4 4 0 Coenzyme PQQ synthesis protein D (PqqD) ABC_tran PF00005.22 gi|452208350|ref|YP_007488472.1| - 2.5e-29 102.3 0.1 3.5e-29 101.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|452208350|ref|YP_007488472.1| - 2e-08 34.5 0.4 4.5e-06 26.8 0.3 2.1 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|452208350|ref|YP_007488472.1| - 9.9e-05 22.7 0.1 0.00029 21.2 0.0 1.7 2 0 0 2 2 2 1 AAA domain SMC_N PF02463.14 gi|452208350|ref|YP_007488472.1| - 0.00029 20.1 0.0 0.54 9.4 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|452208350|ref|YP_007488472.1| - 0.0011 19.0 1.0 0.0062 16.6 0.7 2.0 1 1 0 1 1 1 1 AAA domain SbcCD_C PF13558.1 gi|452208350|ref|YP_007488472.1| - 0.0014 18.4 0.4 0.011 15.6 0.3 2.1 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_29 PF13555.1 gi|452208350|ref|YP_007488472.1| - 0.0045 16.4 0.0 0.012 15.1 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|452208350|ref|YP_007488472.1| - 0.0057 15.7 0.0 0.29 10.1 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain UPF0079 PF02367.12 gi|452208350|ref|YP_007488472.1| - 0.0088 15.6 0.0 0.019 14.6 0.0 1.5 1 0 0 1 1 1 1 Uncharacterised P-loop hydrolase UPF0079 AAA_19 PF13245.1 gi|452208350|ref|YP_007488472.1| - 0.011 15.4 0.4 4.2 7.1 0.1 2.5 2 0 0 2 2 2 0 Part of AAA domain NB-ARC PF00931.17 gi|452208350|ref|YP_007488472.1| - 0.034 12.9 0.1 0.092 11.5 0.0 1.7 2 0 0 2 2 2 0 NB-ARC domain AAA_16 PF13191.1 gi|452208350|ref|YP_007488472.1| - 0.035 14.1 1.6 1.4 8.8 0.0 2.2 2 0 0 2 2 2 0 AAA ATPase domain Miro PF08477.8 gi|452208350|ref|YP_007488472.1| - 0.04 14.4 0.0 0.27 11.7 0.0 2.1 2 1 0 2 2 2 0 Miro-like protein AAA_13 PF13166.1 gi|452208350|ref|YP_007488472.1| - 0.05 12.0 0.1 0.56 8.6 0.0 2.0 1 1 0 2 2 2 0 AAA domain DUF258 PF03193.11 gi|452208350|ref|YP_007488472.1| - 0.079 12.1 0.0 0.11 11.6 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 Zeta_toxin PF06414.7 gi|452208350|ref|YP_007488472.1| - 0.08 12.0 0.0 0.15 11.1 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin AAA_30 PF13604.1 gi|452208350|ref|YP_007488472.1| - 0.087 12.3 1.1 0.42 10.1 0.0 2.2 2 1 0 2 2 2 0 AAA domain BCA_ABC_TP_C PF12399.3 gi|452208350|ref|YP_007488472.1| - 0.11 12.1 1.4 0.2 11.3 0.2 2.1 2 0 0 2 2 2 0 Branched-chain amino acid ATP-binding cassette transporter MMR_HSR1 PF01926.18 gi|452208350|ref|YP_007488472.1| - 0.13 12.2 0.1 0.59 10.0 0.0 2.0 2 1 0 2 2 2 0 50S ribosome-binding GTPase ABC_tran PF00005.22 gi|452208351|ref|YP_007488473.1| - 9.7e-30 103.6 0.0 1.2e-29 103.3 0.0 1.1 1 0 0 1 1 1 1 ABC transporter BCA_ABC_TP_C PF12399.3 gi|452208351|ref|YP_007488473.1| - 9.3e-12 44.3 0.2 1.8e-11 43.4 0.1 1.5 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_21 PF13304.1 gi|452208351|ref|YP_007488473.1| - 7.4e-09 35.9 0.2 6.4e-07 29.6 0.2 2.1 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|452208351|ref|YP_007488473.1| - 6.7e-05 22.3 0.1 0.00012 21.5 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_10 PF12846.2 gi|452208351|ref|YP_007488473.1| - 0.001 18.5 0.1 0.0034 16.8 0.1 1.6 1 1 1 2 2 2 1 AAA-like domain AAA_16 PF13191.1 gi|452208351|ref|YP_007488473.1| - 0.0013 18.7 0.3 0.0067 16.4 0.2 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_25 PF13481.1 gi|452208351|ref|YP_007488473.1| - 0.0018 17.6 0.1 0.56 9.5 0.0 2.2 2 0 0 2 2 2 2 AAA domain AAA_23 PF13476.1 gi|452208351|ref|YP_007488473.1| - 0.0027 18.0 0.2 0.0057 17.0 0.1 1.4 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.1 gi|452208351|ref|YP_007488473.1| - 0.012 15.2 0.0 0.033 13.7 0.0 1.8 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|452208351|ref|YP_007488473.1| - 0.014 15.3 0.2 5.6 6.9 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.1 gi|452208351|ref|YP_007488473.1| - 0.024 14.7 0.3 0.21 11.6 0.2 2.1 1 1 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|452208351|ref|YP_007488473.1| - 0.027 13.6 0.0 0.04 13.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF258 SbcCD_C PF13558.1 gi|452208351|ref|YP_007488473.1| - 0.049 13.5 0.2 0.086 12.7 0.1 1.4 1 0 0 1 1 1 0 Putative exonuclease SbcCD, C subunit TrkA_C PF02080.16 gi|452208351|ref|YP_007488473.1| - 0.066 12.8 2.0 2.7 7.6 0.0 3.0 3 0 0 3 3 3 0 TrkA-C domain SMC_N PF02463.14 gi|452208351|ref|YP_007488473.1| - 0.067 12.4 0.4 0.15 11.3 0.3 1.8 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain AAA_19 PF13245.1 gi|452208351|ref|YP_007488473.1| - 0.089 12.5 0.0 0.2 11.4 0.0 1.5 1 0 0 1 1 1 0 Part of AAA domain DUF87 PF01935.12 gi|452208351|ref|YP_007488473.1| - 0.097 12.4 0.1 0.52 10.0 0.0 2.0 2 1 0 2 2 2 0 Domain of unknown function DUF87 Mg_chelatase PF01078.16 gi|452208351|ref|YP_007488473.1| - 0.12 11.4 0.0 0.19 10.8 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI MMR_HSR1 PF01926.18 gi|452208351|ref|YP_007488473.1| - 0.17 11.8 0.2 0.3 11.0 0.2 1.8 1 1 0 1 1 1 0 50S ribosome-binding GTPase T2SE PF00437.15 gi|452208351|ref|YP_007488473.1| - 0.19 10.5 1.4 2.8 6.7 0.0 2.2 2 0 0 2 2 2 0 Type II/IV secretion system protein AAA_17 PF13207.1 gi|452208351|ref|YP_007488473.1| - 0.26 12.1 1.0 0.77 10.5 0.7 2.1 1 1 0 1 1 1 0 AAA domain BPD_transp_2 PF02653.11 gi|452208352|ref|YP_007488474.1| - 1e-32 113.2 46.8 1.5e-32 112.6 32.4 1.3 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.11 gi|452208353|ref|YP_007488475.1| - 8.8e-30 103.5 39.6 1.1e-29 103.2 27.5 1.1 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component Peripla_BP_6 PF13458.1 gi|452208354|ref|YP_007488476.1| - 5.2e-67 226.6 4.1 6.6e-67 226.2 2.8 1.1 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_5 PF13433.1 gi|452208354|ref|YP_007488476.1| - 7.5e-23 80.8 0.0 1e-22 80.4 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein domain ANF_receptor PF01094.23 gi|452208354|ref|YP_007488476.1| - 2.8e-07 29.6 0.2 1e-06 27.8 0.1 1.8 1 1 0 1 1 1 1 Receptor family ligand binding region TAT_signal PF10518.4 gi|452208354|ref|YP_007488476.1| - 0.011 15.7 4.6 0.011 15.7 3.2 2.5 3 0 0 3 3 3 0 TAT (twin-arginine translocation) pathway signal sequence UCR_Fe-S_N PF10399.4 gi|452208354|ref|YP_007488476.1| - 0.02 14.0 1.3 0.057 12.6 0.9 1.8 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal AMP-binding PF00501.23 gi|452208355|ref|YP_007488477.1| - 3.3e-94 315.6 0.2 4.2e-94 315.2 0.1 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|452208355|ref|YP_007488477.1| - 9.2e-16 58.5 0.6 2.8e-15 57.0 0.4 1.9 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain PAS_9 PF13426.1 gi|452208356|ref|YP_007488478.1| - 2.2e-26 92.2 0.0 5.5e-19 68.4 0.0 2.7 2 0 0 2 2 2 2 PAS domain HTH_10 PF04967.7 gi|452208356|ref|YP_007488478.1| - 4.2e-22 77.4 0.0 1.1e-21 76.1 0.0 1.8 1 0 0 1 1 1 1 HTH DNA binding domain PAS PF00989.19 gi|452208356|ref|YP_007488478.1| - 3.1e-20 72.0 0.0 7.9e-14 51.4 0.0 2.7 2 0 0 2 2 2 2 PAS fold PAS_4 PF08448.5 gi|452208356|ref|YP_007488478.1| - 3.5e-15 55.9 9.8 1.4e-14 54.0 0.1 3.7 4 0 0 4 4 4 2 PAS fold Phage_integrase PF00589.17 gi|452208356|ref|YP_007488478.1| - 1.3e-10 41.2 0.0 2.8e-10 40.1 0.0 1.5 1 0 0 1 1 1 1 Phage integrase family GAF_2 PF13185.1 gi|452208356|ref|YP_007488478.1| - 3.5e-08 34.0 0.4 3.5e-08 34.0 0.3 2.4 3 0 0 3 3 2 1 GAF domain GAF_3 PF13492.1 gi|452208356|ref|YP_007488478.1| - 1.5e-07 31.5 0.0 7e-07 29.4 0.0 2.2 2 0 0 2 2 1 1 GAF domain PAS_3 PF08447.6 gi|452208356|ref|YP_007488478.1| - 1.4e-06 28.3 0.0 6e-06 26.2 0.0 2.1 2 0 0 2 2 2 1 PAS fold Sigma70_r4_2 PF08281.7 gi|452208356|ref|YP_007488478.1| - 5.1e-05 22.6 0.3 0.00085 18.7 0.0 2.9 2 1 0 2 2 2 1 Sigma-70, region 4 Sigma70_r4 PF04545.11 gi|452208356|ref|YP_007488478.1| - 0.00026 20.2 0.0 0.0031 16.7 0.0 2.6 2 0 0 2 2 2 1 Sigma-70, region 4 PAS_7 PF12860.2 gi|452208356|ref|YP_007488478.1| - 0.00065 19.6 0.0 0.006 16.5 0.0 2.4 2 0 0 2 2 2 1 PAS fold PAS_8 PF13188.1 gi|452208356|ref|YP_007488478.1| - 0.00086 19.0 0.0 0.0078 16.0 0.0 2.6 3 0 0 3 3 2 1 PAS domain HTH_22 PF13309.1 gi|452208356|ref|YP_007488478.1| - 0.0062 16.2 0.0 0.013 15.2 0.0 1.5 1 0 0 1 1 1 1 HTH domain GerE PF00196.14 gi|452208356|ref|YP_007488478.1| - 0.012 14.8 0.0 0.041 13.1 0.0 1.9 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family HTH_29 PF13551.1 gi|452208356|ref|YP_007488478.1| - 0.033 14.3 1.7 3 8.0 0.0 3.5 4 0 0 4 4 4 0 Winged helix-turn helix PAS_11 PF14598.1 gi|452208356|ref|YP_007488478.1| - 0.049 13.5 0.0 1 9.3 0.0 2.4 2 0 0 2 2 2 0 PAS domain DUF134 PF02001.11 gi|452208356|ref|YP_007488478.1| - 0.087 12.7 0.0 0.23 11.3 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function DUF134 AMP-binding PF00501.23 gi|452208357|ref|YP_007488479.1| - 3.2e-89 299.1 0.1 3.9e-89 298.9 0.1 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|452208357|ref|YP_007488479.1| - 5.4e-11 43.2 0.3 1.3e-10 42.1 0.2 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain GATase_3 PF07685.9 gi|452208358|ref|YP_007488480.1| - 2.4e-34 118.2 0.0 1.8e-33 115.3 0.0 2.1 2 0 0 2 2 2 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.18 gi|452208358|ref|YP_007488480.1| - 7.6e-28 97.2 0.0 1e-27 96.8 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.1 gi|452208358|ref|YP_007488480.1| - 3.1e-21 75.9 0.0 5.3e-21 75.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain MobB PF03205.9 gi|452208358|ref|YP_007488480.1| - 0.0036 16.9 0.0 0.17 11.6 0.0 2.8 3 0 0 3 3 3 1 Molybdopterin guanine dinucleotide synthesis protein B DUF1611 PF07755.6 gi|452208358|ref|YP_007488480.1| - 0.035 12.7 0.3 0.29 9.7 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1611) Methyltransf_11 PF08241.7 gi|452208359|ref|YP_007488481.1| - 1.3e-15 57.6 0.1 4.6e-15 55.8 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|452208359|ref|YP_007488481.1| - 7.5e-10 38.5 0.0 2.8e-09 36.7 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|452208359|ref|YP_007488481.1| - 4.6e-09 36.2 0.0 6.3e-09 35.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|452208359|ref|YP_007488481.1| - 1.1e-06 28.9 0.1 3.1e-06 27.4 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|452208359|ref|YP_007488481.1| - 3.7e-06 27.3 0.0 1.6e-05 25.2 0.0 2.0 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|452208359|ref|YP_007488481.1| - 5e-06 26.5 6.7 0.0002 21.3 4.6 2.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|452208359|ref|YP_007488481.1| - 7.8e-05 23.2 1.9 0.00049 20.6 1.3 2.3 1 1 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|452208359|ref|YP_007488481.1| - 9.2e-05 21.5 0.0 0.00014 21.0 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase MetW PF07021.7 gi|452208359|ref|YP_007488481.1| - 0.00022 20.6 0.0 0.00037 19.9 0.0 1.3 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_32 PF13679.1 gi|452208359|ref|YP_007488481.1| - 0.0004 20.0 0.0 0.0007 19.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|452208359|ref|YP_007488481.1| - 0.00043 19.4 0.0 0.0029 16.7 0.0 2.1 2 1 0 2 2 2 1 ubiE/COQ5 methyltransferase family MTS PF05175.9 gi|452208359|ref|YP_007488481.1| - 0.0013 18.1 0.0 0.0032 16.8 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase small domain FtsJ PF01728.14 gi|452208359|ref|YP_007488481.1| - 0.0062 16.5 0.0 0.0094 15.9 0.0 1.3 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_8 PF05148.10 gi|452208359|ref|YP_007488481.1| - 0.027 14.1 0.1 0.04 13.5 0.1 1.2 1 0 0 1 1 1 0 Hypothetical methyltransferase PCMT PF01135.14 gi|452208359|ref|YP_007488481.1| - 0.068 12.6 0.0 0.12 11.9 0.0 1.3 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) zf-RING_3 PF14369.1 gi|452208360|ref|YP_007488482.1| - 0.015 15.3 1.0 0.027 14.4 0.7 1.4 1 0 0 1 1 1 0 zinc-finger A2L_zn_ribbon PF08792.5 gi|452208360|ref|YP_007488482.1| - 0.043 13.2 1.6 0.061 12.8 1.1 1.3 1 1 0 1 1 1 0 A2L zinc ribbon domain zf-C2H2_3 PF13878.1 gi|452208360|ref|YP_007488482.1| - 0.052 13.1 0.0 0.075 12.6 0.0 1.4 1 0 0 1 1 1 0 zinc-finger of acetyl-transferase ESCO zf-NADH-PPase PF09297.6 gi|452208360|ref|YP_007488482.1| - 0.054 13.0 0.3 0.092 12.2 0.2 1.4 1 0 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain DUF1922 PF09082.5 gi|452208360|ref|YP_007488482.1| - 0.056 13.5 0.8 0.065 13.3 0.6 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1922) OrfB_Zn_ribbon PF07282.6 gi|452208360|ref|YP_007488482.1| - 0.069 12.8 1.9 0.088 12.4 1.3 1.1 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zf-CSL PF05207.8 gi|452208360|ref|YP_007488482.1| - 0.1 12.1 2.2 0.22 11.0 1.5 1.6 1 1 0 1 1 1 0 CSL zinc finger zf-Mss51 PF13824.1 gi|452208360|ref|YP_007488482.1| - 0.11 12.3 1.4 0.17 11.7 1.0 1.5 1 1 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 Sgf11 PF08209.6 gi|452208360|ref|YP_007488482.1| - 0.14 11.5 4.0 2 7.7 0.4 2.5 2 1 0 2 2 2 0 Sgf11 (transcriptional regulation protein) IBR PF01485.16 gi|452208360|ref|YP_007488482.1| - 0.15 11.9 2.8 0.19 11.6 2.0 1.2 1 0 0 1 1 1 0 IBR domain ADK_lid PF05191.9 gi|452208360|ref|YP_007488482.1| - 0.18 11.5 1.4 0.2 11.3 0.0 1.8 2 0 0 2 2 2 0 Adenylate kinase, active site lid zinc_ribbon_5 PF13719.1 gi|452208360|ref|YP_007488482.1| - 0.22 11.1 0.1 0.22 11.1 0.1 1.9 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|452208360|ref|YP_007488482.1| - 0.3 10.8 0.1 0.3 10.8 0.1 1.8 2 0 0 2 2 2 0 zinc-ribbon domain HypA PF01155.14 gi|452208360|ref|YP_007488482.1| - 0.35 10.5 1.8 0.35 10.5 1.3 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Lar_restr_allev PF14354.1 gi|452208360|ref|YP_007488482.1| - 0.86 9.9 3.5 1.9 8.8 2.4 1.7 1 1 0 1 1 1 0 Restriction alleviation protein Lar zf-HYPF PF07503.7 gi|452208360|ref|YP_007488482.1| - 1.7 8.0 4.9 0.92 8.9 1.4 2.2 1 1 0 1 1 1 0 HypF finger AP_endonuc_2 PF01261.19 gi|452208361|ref|YP_007488483.1| - 1.1e-26 93.5 1.1 2e-26 92.5 0.5 1.6 2 0 0 2 2 2 1 Xylose isomerase-like TIM barrel BPL_LplA_LipB PF03099.14 gi|452208362|ref|YP_007488484.1| - 2e-17 63.3 0.0 3.2e-17 62.7 0.0 1.3 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family DUF1707 PF08044.6 gi|452208362|ref|YP_007488484.1| - 0.29 10.9 2.7 15 5.3 0.1 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF1707) TrkH PF02386.11 gi|452208363|ref|YP_007488485.1| - 1.1e-47 162.3 15.1 1.1e-47 162.3 10.5 2.3 2 0 0 2 2 2 2 Cation transport protein RNase_H_2 PF13482.1 gi|452208364|ref|YP_007488486.1| - 1e-32 113.1 0.0 1.4e-32 112.7 0.0 1.2 1 0 0 1 1 1 1 RNase_H superfamily DNA_pol_A_exo1 PF01612.15 gi|452208364|ref|YP_007488486.1| - 0.0059 16.1 0.0 0.011 15.2 0.0 1.3 2 0 0 2 2 2 1 3'-5' exonuclease HHH_5 PF14520.1 gi|452208364|ref|YP_007488486.1| - 0.022 14.9 0.0 0.19 11.9 0.0 2.4 3 1 0 3 3 3 0 Helix-hairpin-helix domain DNA_pol_B_exo2 PF10108.4 gi|452208364|ref|YP_007488486.1| - 0.027 13.9 0.0 0.18 11.3 0.0 2.0 2 0 0 2 2 2 0 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB DUF4066 PF13278.1 gi|452208365|ref|YP_007488487.1| - 2.1e-38 131.2 0.0 2.5e-38 130.9 0.0 1.0 1 0 0 1 1 1 1 Putative amidotransferase DJ-1_PfpI PF01965.19 gi|452208365|ref|YP_007488487.1| - 8.4e-15 54.5 0.1 1.2e-14 53.9 0.1 1.3 1 0 0 1 1 1 1 DJ-1/PfpI family SRR PF07709.6 gi|452208366|ref|YP_007488488.1| - 0.19 12.0 1.6 9.8 6.8 0.0 3.0 2 1 1 3 3 3 0 Seven Residue Repeat C1_3 PF07649.7 gi|452208367|ref|YP_007488489.1| - 0.0032 17.4 0.9 2.2 8.4 0.0 2.1 2 0 0 2 2 2 2 C1-like domain DZR PF12773.2 gi|452208367|ref|YP_007488489.1| - 0.019 14.8 0.2 0.03 14.1 0.2 1.4 1 1 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|452208367|ref|YP_007488489.1| - 0.027 13.6 2.2 1.1 8.5 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DUF3268 PF11672.3 gi|452208367|ref|YP_007488489.1| - 0.045 13.8 0.1 0.05 13.6 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3268) OrfB_Zn_ribbon PF07282.6 gi|452208367|ref|YP_007488489.1| - 0.056 13.1 0.4 0.07 12.8 0.3 1.1 1 0 0 1 1 1 0 Putative transposase DNA-binding domain DUF1610 PF07754.6 gi|452208367|ref|YP_007488489.1| - 0.061 13.4 3.7 0.49 10.5 0.1 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) RRN7 PF11781.3 gi|452208367|ref|YP_007488489.1| - 0.09 12.2 1.3 2.2 7.8 0.1 2.2 2 0 0 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 C1_1 PF00130.17 gi|452208367|ref|YP_007488489.1| - 0.11 12.2 0.1 0.14 11.9 0.1 1.1 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Nudix_N_2 PF14803.1 gi|452208367|ref|YP_007488489.1| - 0.18 11.5 1.5 2.2 8.0 1.1 2.2 1 1 0 1 1 1 0 Nudix N-terminal zinc_ribbon_2 PF13240.1 gi|452208367|ref|YP_007488489.1| - 0.34 10.4 2.6 2.2 7.8 1.8 2.0 1 1 0 1 1 1 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|452208367|ref|YP_007488489.1| - 1.4 8.9 4.4 27 4.8 2.9 2.1 1 1 0 1 1 1 0 Zinc ribbon domain TPP_enzyme_C PF02775.16 gi|452208368|ref|YP_007488490.1| - 4.9e-30 104.1 0.3 8.3e-30 103.3 0.1 1.3 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.3 gi|452208368|ref|YP_007488490.1| - 1e-14 54.1 0.4 2e-14 53.2 0.3 1.5 1 0 0 1 1 1 1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal Fer4_7 PF12838.2 gi|452208370|ref|YP_007488492.1| - 1.5e-12 47.7 23.6 7.2e-08 32.6 5.1 2.0 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4 PF00037.22 gi|452208370|ref|YP_007488492.1| - 2.2e-12 45.9 14.2 7.7e-08 31.6 2.9 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|452208370|ref|YP_007488492.1| - 1.2e-10 41.4 5.8 2e-10 40.7 4.0 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|452208370|ref|YP_007488492.1| - 5.6e-09 35.4 15.2 1.7e-06 27.6 3.4 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|452208370|ref|YP_007488492.1| - 1.6e-07 31.0 19.0 5.9e-05 22.7 6.0 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|452208370|ref|YP_007488492.1| - 1.9e-07 30.8 8.6 4.8e-07 29.5 6.0 1.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|452208370|ref|YP_007488492.1| - 3e-07 30.3 10.1 4.6e-06 26.5 3.7 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|452208370|ref|YP_007488492.1| - 7.6e-07 28.6 10.7 0.00045 19.9 1.9 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|452208370|ref|YP_007488492.1| - 9.6e-07 29.0 0.7 0.027 14.8 0.2 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|452208370|ref|YP_007488492.1| - 1.2e-06 28.7 3.5 0.00068 20.0 0.7 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|452208370|ref|YP_007488492.1| - 2.8e-06 27.9 6.7 8.2e-05 23.2 0.7 2.7 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|452208370|ref|YP_007488492.1| - 1.8e-05 24.6 8.7 0.00028 20.9 2.2 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.1 gi|452208370|ref|YP_007488492.1| - 0.0016 18.7 13.7 0.0016 18.7 9.5 2.5 2 1 0 2 2 2 1 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|452208370|ref|YP_007488492.1| - 0.002 18.5 12.9 0.0027 18.1 3.6 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_15 PF13459.1 gi|452208370|ref|YP_007488492.1| - 0.028 14.9 19.1 0.093 13.3 10.9 2.8 2 1 0 2 2 2 0 4Fe-4S single cluster domain UPF0051 PF01458.12 gi|452208371|ref|YP_007488493.1| - 1.4e-70 237.3 1.0 2e-70 236.8 0.7 1.2 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) TFIIB PF00382.14 gi|452208372|ref|YP_007488494.1| - 3.5e-33 113.2 1.1 1.6e-17 63.0 0.0 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|452208372|ref|YP_007488494.1| - 7.1e-14 50.8 1.3 1.3e-13 50.0 0.4 1.8 2 0 0 2 2 2 1 TFIIB zinc-binding OrfB_Zn_ribbon PF07282.6 gi|452208372|ref|YP_007488494.1| - 0.0017 17.9 1.3 0.0033 17.0 0.9 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain DZR PF12773.2 gi|452208372|ref|YP_007488494.1| - 0.01 15.6 2.0 0.02 14.7 1.4 1.4 1 0 0 1 1 1 0 Double zinc ribbon Ribosomal_S27e PF01667.12 gi|452208372|ref|YP_007488494.1| - 0.015 14.7 1.0 0.029 13.9 0.7 1.3 1 0 0 1 1 1 0 Ribosomal protein S27 FYVE PF01363.16 gi|452208372|ref|YP_007488494.1| - 0.017 14.9 0.5 0.03 14.2 0.3 1.4 1 0 0 1 1 1 0 FYVE zinc finger Cyclin_C PF02984.14 gi|452208372|ref|YP_007488494.1| - 0.047 13.6 0.1 0.19 11.6 0.0 2.0 1 1 1 2 2 2 0 Cyclin, C-terminal domain HTH_11 PF08279.7 gi|452208372|ref|YP_007488494.1| - 0.095 12.3 0.2 0.67 9.6 0.0 2.3 2 0 0 2 2 2 0 HTH domain UPF0547 PF10571.4 gi|452208372|ref|YP_007488494.1| - 0.18 11.5 1.5 0.35 10.6 1.0 1.5 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 zf-ribbon_3 PF13248.1 gi|452208372|ref|YP_007488494.1| - 0.2 10.8 2.1 3.9 6.8 1.7 2.2 1 1 1 2 2 2 0 zinc-ribbon domain DZR PF12773.2 gi|452208373|ref|YP_007488495.1| - 0.00093 18.9 0.8 0.0011 18.7 0.6 1.2 1 0 0 1 1 1 1 Double zinc ribbon HypA PF01155.14 gi|452208373|ref|YP_007488495.1| - 0.0021 17.7 0.8 0.0024 17.5 0.5 1.0 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family zf-C3HC4_3 PF13920.1 gi|452208373|ref|YP_007488495.1| - 0.0024 17.4 0.2 0.003 17.2 0.1 1.1 1 0 0 1 1 1 1 Zinc finger, C3HC4 type (RING finger) Prok-RING_1 PF14446.1 gi|452208373|ref|YP_007488495.1| - 0.006 16.2 0.9 0.0076 15.9 0.6 1.2 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 zinc_ribbon_2 PF13240.1 gi|452208373|ref|YP_007488495.1| - 0.0097 15.3 2.3 1.1 8.8 0.1 2.1 2 0 0 2 2 2 1 zinc-ribbon domain Nudix_N_2 PF14803.1 gi|452208373|ref|YP_007488495.1| - 0.011 15.4 3.4 0.81 9.4 0.2 2.2 2 0 0 2 2 2 0 Nudix N-terminal TF_Zn_Ribbon PF08271.7 gi|452208373|ref|YP_007488495.1| - 0.012 14.9 4.5 0.86 8.9 0.2 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding PhnA_Zn_Ribbon PF08274.7 gi|452208373|ref|YP_007488495.1| - 0.018 14.8 1.5 1.1 9.0 0.0 2.1 2 0 0 2 2 2 0 PhnA Zinc-Ribbon Zn-ribbon_8 PF09723.5 gi|452208373|ref|YP_007488495.1| - 0.03 14.2 4.6 0.19 11.7 3.2 1.9 1 1 0 1 1 1 0 Zinc ribbon domain RNHCP PF12647.2 gi|452208373|ref|YP_007488495.1| - 0.038 13.8 0.8 0.043 13.6 0.5 1.2 1 0 0 1 1 1 0 RNHCP domain Ogr_Delta PF04606.7 gi|452208373|ref|YP_007488495.1| - 0.04 13.5 1.5 0.62 9.7 0.2 2.1 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger zinc-ribbons_6 PF07191.7 gi|452208373|ref|YP_007488495.1| - 0.043 13.6 0.1 0.054 13.2 0.1 1.2 1 0 0 1 1 1 0 zinc-ribbons zf-RING_4 PF14570.1 gi|452208373|ref|YP_007488495.1| - 0.055 13.0 0.3 0.062 12.8 0.2 1.2 1 0 0 1 1 1 0 RING/Ubox like zinc-binding domain zf-TFIIB PF13453.1 gi|452208373|ref|YP_007488495.1| - 0.06 12.5 4.1 0.68 9.1 0.4 2.1 2 0 0 2 2 2 0 Transcription factor zinc-finger zf-C4_Topoisom PF01396.14 gi|452208373|ref|YP_007488495.1| - 0.067 12.7 2.4 0.1 12.1 0.2 1.9 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zf-C2H2 PF00096.21 gi|452208373|ref|YP_007488495.1| - 0.075 13.4 1.8 7.7 7.0 0.1 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type GFA PF04828.9 gi|452208373|ref|YP_007488495.1| - 0.083 12.8 1.5 1.7 8.6 0.1 2.0 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme TFIIS_C PF01096.13 gi|452208373|ref|YP_007488495.1| - 0.085 12.4 2.5 1.5 8.5 0.1 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-IS66 PF13005.2 gi|452208373|ref|YP_007488495.1| - 0.093 12.7 7.1 0.16 11.9 0.5 2.2 1 1 0 2 2 2 0 zinc-finger binding domain of transposase IS66 C1_3 PF07649.7 gi|452208373|ref|YP_007488495.1| - 0.12 12.4 1.5 0.47 10.5 0.1 2.0 2 0 0 2 2 2 0 C1-like domain zf-ribbon_3 PF13248.1 gi|452208373|ref|YP_007488495.1| - 0.13 11.5 7.3 0.26 10.5 5.0 1.6 1 1 0 1 1 1 0 zinc-ribbon domain A2L_zn_ribbon PF08792.5 gi|452208373|ref|YP_007488495.1| - 0.16 11.4 3.5 5.1 6.6 0.1 2.1 2 0 0 2 2 2 0 A2L zinc ribbon domain OrfB_Zn_ribbon PF07282.6 gi|452208373|ref|YP_007488495.1| - 0.19 11.4 2.9 0.26 10.9 2.0 1.4 1 1 0 1 1 1 0 Putative transposase DNA-binding domain DUF1272 PF06906.6 gi|452208373|ref|YP_007488495.1| - 0.22 11.3 2.7 0.29 11.0 1.9 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF1272) DUF35_N PF12172.3 gi|452208373|ref|YP_007488495.1| - 0.25 11.3 3.4 9.8 6.2 0.1 2.2 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Auto_anti-p27 PF06677.7 gi|452208373|ref|YP_007488495.1| - 0.28 10.9 2.0 4.2 7.2 0.2 2.1 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DNA_RNApol_7kD PF03604.8 gi|452208373|ref|YP_007488495.1| - 0.31 10.5 4.5 0.96 8.9 3.2 1.7 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit Nop10p PF04135.7 gi|452208373|ref|YP_007488495.1| - 0.38 10.5 1.5 2.7 7.7 0.1 2.1 2 0 0 2 2 2 0 Nucleolar RNA-binding protein, Nop10p family zf-Mss51 PF13824.1 gi|452208373|ref|YP_007488495.1| - 0.5 10.2 3.9 12 5.8 2.7 2.1 1 1 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-NADH-PPase PF09297.6 gi|452208373|ref|YP_007488495.1| - 0.51 9.9 4.2 2.2 7.8 0.7 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Zn_ribbon_recom PF13408.1 gi|452208373|ref|YP_007488495.1| - 0.79 10.0 0.3 0.79 10.0 0.2 2.1 1 1 1 2 2 2 0 Recombinase zinc beta ribbon domain zf-FPG_IleRS PF06827.9 gi|452208373|ref|YP_007488495.1| - 1 9.0 4.4 4.6 6.9 0.2 2.2 1 1 1 2 2 2 0 Zinc finger found in FPG and IleRS DUF1610 PF07754.6 gi|452208373|ref|YP_007488495.1| - 1.5 9.0 8.8 1.1 9.4 0.2 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) zf-RING_3 PF14369.1 gi|452208373|ref|YP_007488495.1| - 1.7 8.7 5.4 15 5.6 2.8 2.1 1 1 1 2 2 2 0 zinc-finger Lar_restr_allev PF14354.1 gi|452208373|ref|YP_007488495.1| - 2.1 8.7 4.6 46 4.4 3.2 2.0 1 1 0 1 1 1 0 Restriction alleviation protein Lar UPF0547 PF10571.4 gi|452208373|ref|YP_007488495.1| - 2.3 7.9 6.4 11 5.8 0.9 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Rubredoxin PF00301.15 gi|452208373|ref|YP_007488495.1| - 2.5 8.0 5.5 1e+02 2.8 3.8 2.3 1 1 0 1 1 1 0 Rubredoxin Zn_Tnp_IS1595 PF12760.2 gi|452208373|ref|YP_007488495.1| - 3.1 7.6 6.2 5.3 6.9 0.5 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zf-dskA_traR PF01258.12 gi|452208373|ref|YP_007488495.1| - 8.3 6.2 7.1 12 5.7 0.5 2.1 1 1 1 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger DUF21 PF01595.15 gi|452208374|ref|YP_007488496.1| - 5.5e-27 94.2 0.3 7.8e-27 93.7 0.2 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF21 CBS PF00571.23 gi|452208374|ref|YP_007488496.1| - 1.2e-12 47.4 0.1 5e-08 32.6 0.0 2.4 2 0 0 2 2 2 2 CBS domain HTH_24 PF13412.1 gi|452208375|ref|YP_007488497.1| - 4.6e-10 38.7 0.1 8.2e-10 37.9 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding AsnC_trans_reg PF01037.16 gi|452208375|ref|YP_007488497.1| - 8.6e-07 28.5 0.0 1.5e-06 27.8 0.0 1.4 1 0 0 1 1 1 1 AsnC family HTH_11 PF08279.7 gi|452208375|ref|YP_007488497.1| - 1.8e-06 27.4 0.1 6.4e-06 25.7 0.0 1.9 3 0 0 3 3 2 1 HTH domain HTH_AsnC-type PF13404.1 gi|452208375|ref|YP_007488497.1| - 9.1e-06 25.1 0.1 1.9e-05 24.1 0.0 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_IclR PF09339.5 gi|452208375|ref|YP_007488497.1| - 9.2e-06 25.1 0.2 3.4e-05 23.3 0.0 1.9 2 1 0 2 2 2 1 IclR helix-turn-helix domain MarR PF01047.17 gi|452208375|ref|YP_007488497.1| - 1.5e-05 24.6 0.0 3.3e-05 23.4 0.0 1.6 2 0 0 2 2 1 1 MarR family HTH_20 PF12840.2 gi|452208375|ref|YP_007488497.1| - 2e-05 24.2 0.2 7.7e-05 22.4 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_DeoR PF08220.7 gi|452208375|ref|YP_007488497.1| - 0.00016 21.1 0.0 0.00041 19.8 0.0 1.6 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain TrmB PF01978.14 gi|452208375|ref|YP_007488497.1| - 0.0015 18.1 0.1 0.0025 17.4 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|452208375|ref|YP_007488497.1| - 0.0021 17.6 0.0 0.01 15.4 0.0 1.9 2 0 0 2 2 2 1 MarR family FaeA PF04703.7 gi|452208375|ref|YP_007488497.1| - 0.003 17.6 0.0 0.0055 16.8 0.0 1.4 1 0 0 1 1 1 1 FaeA-like protein HTH_23 PF13384.1 gi|452208375|ref|YP_007488497.1| - 0.0033 17.0 0.0 0.0051 16.4 0.0 1.3 1 0 0 1 1 1 1 Homeodomain-like domain HTH_36 PF13730.1 gi|452208375|ref|YP_007488497.1| - 0.0075 16.3 0.0 0.013 15.6 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|452208375|ref|YP_007488497.1| - 0.017 14.9 0.0 0.044 13.5 0.0 1.7 1 1 0 1 1 1 0 Crp-like helix-turn-helix domain Fe_dep_repress PF01325.14 gi|452208375|ref|YP_007488497.1| - 0.022 14.6 0.0 0.065 13.1 0.0 1.8 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain GntR PF00392.16 gi|452208375|ref|YP_007488497.1| - 0.025 13.9 0.1 0.059 12.8 0.1 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family Rrf2 PF02082.15 gi|452208375|ref|YP_007488497.1| - 0.03 14.4 0.1 0.074 13.1 0.0 1.7 2 0 0 2 2 2 0 Transcriptional regulator HTH_5 PF01022.15 gi|452208375|ref|YP_007488497.1| - 0.036 13.7 0.0 0.079 12.6 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_10 PF04967.7 gi|452208375|ref|YP_007488497.1| - 0.048 13.2 0.0 0.16 11.6 0.0 1.8 2 0 0 2 2 2 0 HTH DNA binding domain T4SS PF07996.6 gi|452208375|ref|YP_007488497.1| - 0.066 13.0 0.0 0.082 12.7 0.0 1.1 1 0 0 1 1 1 0 Type IV secretion system proteins DDE_Tnp_1 PF01609.16 gi|452208376|ref|YP_007488498.1| - 2.8e-11 43.3 0.6 5.1e-11 42.5 0.4 1.4 1 0 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.6 gi|452208376|ref|YP_007488498.1| - 0.00022 21.0 0.3 0.0008 19.2 0.0 2.1 2 0 0 2 2 2 1 Transposase domain (DUF772) DDE_Tnp_1_2 PF13586.1 gi|452208376|ref|YP_007488498.1| - 0.017 15.3 0.2 0.51 10.5 0.0 2.4 2 0 0 2 2 2 0 Transposase DDE domain PAS_3 PF08447.6 gi|452208377|ref|YP_007488499.1| - 1.2e-15 57.4 0.2 2.3e-15 56.4 0.1 1.5 1 0 0 1 1 1 1 PAS fold PAS_4 PF08448.5 gi|452208377|ref|YP_007488499.1| - 4.3e-13 49.2 1.5 2.9e-11 43.3 0.1 3.1 3 0 0 3 3 3 1 PAS fold HTH_10 PF04967.7 gi|452208377|ref|YP_007488499.1| - 1.7e-12 46.7 0.0 4e-12 45.5 0.0 1.7 1 0 0 1 1 1 1 HTH DNA binding domain PAS_9 PF13426.1 gi|452208377|ref|YP_007488499.1| - 1.7e-10 41.2 0.1 1.6e-09 38.0 0.0 2.7 3 0 0 3 3 3 1 PAS domain PAS PF00989.19 gi|452208377|ref|YP_007488499.1| - 1.1e-09 37.9 0.2 8.1e-09 35.2 0.0 2.3 2 1 1 3 3 3 1 PAS fold PAS_11 PF14598.1 gi|452208377|ref|YP_007488499.1| - 0.0016 18.4 0.0 0.0067 16.3 0.0 2.0 2 0 0 2 2 2 1 PAS domain Glug PF07581.7 gi|452208378|ref|YP_007488500.1| - 7.1e-26 88.6 204.2 0.00021 21.3 0.6 24.1 23 2 2 25 25 25 15 The GLUG motif Big_5 PF13205.1 gi|452208378|ref|YP_007488500.1| - 3.9e-15 56.3 9.1 3.9e-15 56.3 6.3 10.7 8 3 4 12 12 12 1 Bacterial Ig-like domain PKD PF00801.15 gi|452208378|ref|YP_007488500.1| - 8.4e-12 44.6 5.3 8.4e-12 44.6 3.7 5.9 6 1 0 6 6 6 2 PKD domain Peptidase_M26_N PF05342.9 gi|452208378|ref|YP_007488500.1| - 7e-05 21.9 0.3 0.99 8.3 0.0 3.5 3 0 0 3 3 3 2 M26 IgA1-specific Metallo-endopeptidase N-terminal region Y_Y_Y PF07495.8 gi|452208378|ref|YP_007488500.1| - 0.0029 17.3 0.1 1.1 9.0 0.0 3.9 3 0 0 3 3 3 1 Y_Y_Y domain CopC PF04234.7 gi|452208378|ref|YP_007488500.1| - 0.021 15.4 11.7 0.23 12.1 0.0 7.1 8 0 0 8 8 8 0 CopC domain CbtB PF09489.5 gi|452208379|ref|YP_007488501.1| - 0.0082 16.0 3.2 0.063 13.1 0.0 2.1 2 0 0 2 2 2 1 Probable cobalt transporter subunit (CbtB) DUF3082 PF11282.3 gi|452208379|ref|YP_007488501.1| - 0.38 10.8 3.6 5 7.2 0.7 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3082) IncA PF04156.9 gi|452208379|ref|YP_007488501.1| - 2.3 7.7 6.0 2.6 7.5 4.2 1.0 1 0 0 1 1 1 0 IncA protein Gram_pos_anchor PF00746.16 gi|452208379|ref|YP_007488501.1| - 2.5 8.0 8.4 3.2 7.6 1.5 2.2 2 0 0 2 2 2 0 Gram positive anchor TGT_C2 PF14810.1 gi|452208380|ref|YP_007488502.1| - 1.6e-23 82.3 0.2 2.4e-23 81.7 0.1 1.3 1 0 0 1 1 1 1 Patch-forming domain C2 of tRNA-guanine transglycosylase PUA PF01472.15 gi|452208380|ref|YP_007488502.1| - 5.5e-16 58.0 0.1 9.8e-16 57.2 0.1 1.4 1 0 0 1 1 1 1 PUA domain NAC PF01849.13 gi|452208381|ref|YP_007488503.1| - 2.9e-17 61.9 0.1 4.2e-17 61.4 0.1 1.3 1 0 0 1 1 1 1 NAC domain UBA PF00627.26 gi|452208381|ref|YP_007488503.1| - 0.00071 19.3 0.3 0.00071 19.3 0.2 2.4 2 1 0 2 2 2 1 UBA/TS-N domain DUF937 PF06078.6 gi|452208381|ref|YP_007488503.1| - 0.0032 17.6 0.6 0.1 12.7 0.4 2.2 1 1 0 1 1 1 1 Bacterial protein of unknown function (DUF937) DUF3606 PF12244.3 gi|452208381|ref|YP_007488503.1| - 0.0065 16.0 0.2 0.012 15.1 0.1 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF3606) UBA_4 PF14555.1 gi|452208381|ref|YP_007488503.1| - 0.11 11.9 0.1 0.25 10.8 0.1 1.5 1 0 0 1 1 1 0 UBA-like domain Methyltransf_18 PF12847.2 gi|452208382|ref|YP_007488504.1| - 1.6e-14 54.4 0.2 2.6e-14 53.7 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain GCD14 PF08704.5 gi|452208382|ref|YP_007488504.1| - 1.9e-14 53.7 0.0 3e-11 43.2 0.0 2.2 1 1 1 2 2 2 2 tRNA methyltransferase complex GCD14 subunit Methyltransf_26 PF13659.1 gi|452208382|ref|YP_007488504.1| - 1.3e-10 41.3 2.4 1.7e-09 37.6 1.7 2.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|452208382|ref|YP_007488504.1| - 2.8e-07 30.2 0.0 3.8e-07 29.8 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|452208382|ref|YP_007488504.1| - 5.1e-07 29.2 0.2 2.1e-06 27.1 0.1 1.8 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_24 PF13578.1 gi|452208382|ref|YP_007488504.1| - 7.6e-07 29.9 0.2 1.9e-06 28.6 0.1 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|452208382|ref|YP_007488504.1| - 2.4e-05 24.0 0.0 7.5e-05 22.4 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|452208382|ref|YP_007488504.1| - 7.4e-05 22.0 0.3 9.6e-05 21.6 0.2 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_3 PF01596.12 gi|452208382|ref|YP_007488504.1| - 7.7e-05 21.8 0.0 0.0001 21.4 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_12 PF08242.7 gi|452208382|ref|YP_007488504.1| - 0.0002 21.7 0.2 0.00047 20.5 0.1 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|452208382|ref|YP_007488504.1| - 0.00049 20.5 0.2 0.0011 19.3 0.1 1.6 1 1 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|452208382|ref|YP_007488504.1| - 0.00072 19.1 0.1 0.00091 18.8 0.1 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) RrnaAD PF00398.15 gi|452208382|ref|YP_007488504.1| - 0.0034 16.4 0.0 0.0047 15.9 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_25 PF13649.1 gi|452208382|ref|YP_007488504.1| - 0.0051 17.1 0.1 0.0086 16.4 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.15 gi|452208382|ref|YP_007488504.1| - 0.018 14.1 0.0 0.023 13.7 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase TehB PF03848.9 gi|452208382|ref|YP_007488504.1| - 0.11 11.5 0.0 0.16 11.0 0.0 1.2 1 0 0 1 1 1 0 Tellurite resistance protein TehB DUF4350 PF14258.1 gi|452208382|ref|YP_007488504.1| - 0.31 11.2 3.6 1.3 9.2 1.4 2.9 2 1 0 2 2 2 0 Domain of unknown function (DUF4350) DUF3179 PF11376.3 gi|452208384|ref|YP_007488506.1| - 2e-76 256.6 0.0 2.5e-76 256.3 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3179) TFIIS_C PF01096.13 gi|452208385|ref|YP_007488507.1| - 2.8e-17 62.0 3.5 2.8e-17 62.0 2.4 3.0 3 0 0 3 3 3 1 Transcription factor S-II (TFIIS) RNA_POL_M_15KD PF02150.11 gi|452208385|ref|YP_007488507.1| - 9e-08 31.6 0.6 9e-08 31.6 0.4 2.8 3 0 0 3 3 3 1 RNA polymerases M/15 Kd subunit OrfB_Zn_ribbon PF07282.6 gi|452208385|ref|YP_007488507.1| - 2.7e-07 30.1 8.2 0.00086 18.9 1.0 2.3 2 0 0 2 2 2 2 Putative transposase DNA-binding domain DZR PF12773.2 gi|452208385|ref|YP_007488507.1| - 3.3e-05 23.6 8.8 0.004 16.9 0.4 2.9 2 1 1 3 3 3 3 Double zinc ribbon Zn_Tnp_IS1595 PF12760.2 gi|452208385|ref|YP_007488507.1| - 3.8e-05 23.3 7.3 0.00057 19.6 0.8 2.4 2 1 0 2 2 2 1 Transposase zinc-ribbon domain DUF2387 PF09526.5 gi|452208385|ref|YP_007488507.1| - 0.00044 20.1 9.5 0.0057 16.5 2.2 2.5 1 1 0 2 2 2 1 Probable metal-binding protein (DUF2387) zf-C2HC5 PF06221.8 gi|452208385|ref|YP_007488507.1| - 0.0028 17.3 2.6 0.05 13.3 0.1 2.7 3 0 0 3 3 3 1 Putative zinc finger motif, C2HC5-type zf-ribbon_3 PF13248.1 gi|452208385|ref|YP_007488507.1| - 0.003 16.6 8.9 0.13 11.5 0.1 3.8 4 0 0 4 4 4 1 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|452208385|ref|YP_007488507.1| - 0.014 14.9 7.6 0.11 12.0 0.0 3.5 4 0 0 4 4 4 0 zinc-ribbon domain Terminase_GpA PF05876.7 gi|452208385|ref|YP_007488507.1| - 0.016 13.6 1.4 0.016 13.6 0.9 1.6 2 0 0 2 2 2 0 Phage terminase large subunit (GpA) Baculo_LEF5_C PF11792.3 gi|452208385|ref|YP_007488507.1| - 0.018 14.3 0.8 0.018 14.3 0.5 2.3 3 0 0 3 3 2 0 Baculoviridae late expression factor 5 C-terminal domain Ribosomal_L37ae PF01780.14 gi|452208385|ref|YP_007488507.1| - 0.04 13.7 4.5 0.87 9.4 0.2 2.8 2 1 0 2 2 2 0 Ribosomal L37ae protein family Prok-RING_1 PF14446.1 gi|452208385|ref|YP_007488507.1| - 0.042 13.5 8.2 0.11 12.1 0.6 3.0 3 0 0 3 3 3 0 Prokaryotic RING finger family 1 zinc_ribbon_4 PF13717.1 gi|452208385|ref|YP_007488507.1| - 0.054 13.1 9.0 0.11 12.2 0.0 3.4 4 0 0 4 4 3 0 zinc-ribbon domain DNA_RNApol_7kD PF03604.8 gi|452208385|ref|YP_007488507.1| - 0.059 12.8 11.5 0.19 11.2 0.1 3.7 3 1 0 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit RRN7 PF11781.3 gi|452208385|ref|YP_007488507.1| - 0.087 12.3 14.1 2.1 7.9 2.3 4.2 3 1 0 3 3 3 0 RNA polymerase I-specific transcription initiation factor Rrn7 Lar_restr_allev PF14354.1 gi|452208385|ref|YP_007488507.1| - 0.087 13.1 0.8 0.087 13.1 0.5 2.8 2 1 0 2 2 2 0 Restriction alleviation protein Lar Ribosomal_L37e PF01907.14 gi|452208385|ref|YP_007488507.1| - 0.088 12.6 2.9 1.1 9.0 0.5 2.4 2 0 0 2 2 2 0 Ribosomal protein L37e UPF0547 PF10571.4 gi|452208385|ref|YP_007488507.1| - 0.11 12.2 0.1 0.11 12.2 0.0 3.9 4 0 0 4 4 4 0 Uncharacterised protein family UPF0547 DUF2752 PF10825.3 gi|452208385|ref|YP_007488507.1| - 0.14 12.1 0.1 0.87 9.6 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2752) NinF PF05810.7 gi|452208385|ref|YP_007488507.1| - 0.24 11.2 6.0 0.17 11.7 0.6 2.7 2 1 0 2 2 2 0 NinF protein PHF5 PF03660.9 gi|452208385|ref|YP_007488507.1| - 0.3 11.1 4.5 1.1 9.3 0.2 2.1 1 1 0 2 2 2 0 PHF5-like protein zinc_ribbon_2 PF13240.1 gi|452208385|ref|YP_007488507.1| - 0.36 10.3 10.9 0.5 9.9 0.1 3.6 4 0 0 4 4 4 0 zinc-ribbon domain FYVE_2 PF02318.11 gi|452208385|ref|YP_007488507.1| - 0.42 10.5 3.0 0.78 9.6 0.2 2.1 2 0 0 2 2 2 0 FYVE-type zinc finger TF_Zn_Ribbon PF08271.7 gi|452208385|ref|YP_007488507.1| - 0.44 9.8 16.3 0.25 10.7 1.8 3.7 2 2 0 2 2 2 0 TFIIB zinc-binding zf-CCHC_4 PF14392.1 gi|452208385|ref|YP_007488507.1| - 0.49 10.0 0.2 0.49 10.0 0.1 2.6 3 0 0 3 3 3 0 Zinc knuckle Rubredoxin PF00301.15 gi|452208385|ref|YP_007488507.1| - 0.69 9.8 8.5 4.2 7.3 0.2 3.5 3 1 1 4 4 4 0 Rubredoxin zf-ISL3 PF14690.1 gi|452208385|ref|YP_007488507.1| - 0.77 9.8 0.1 0.77 9.8 0.0 3.2 4 0 0 4 4 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DUF2072 PF09845.4 gi|452208385|ref|YP_007488507.1| - 0.88 9.5 5.4 3.7 7.4 0.3 2.3 1 1 1 2 2 2 0 Zn-ribbon containing protein (DUF2072) Zn-ribbon_8 PF09723.5 gi|452208385|ref|YP_007488507.1| - 1.2 9.1 11.1 3.3 7.7 0.1 3.9 3 1 1 4 4 4 0 Zinc ribbon domain HypA PF01155.14 gi|452208385|ref|YP_007488507.1| - 1.3 8.6 9.9 1.9 8.2 0.7 2.7 1 1 2 3 3 3 0 Hydrogenase expression/synthesis hypA family Nudix_N_2 PF14803.1 gi|452208385|ref|YP_007488507.1| - 1.5 8.5 13.5 4.2 7.1 0.1 3.8 3 1 0 3 3 3 0 Nudix N-terminal zf-H2C2_2 PF13465.1 gi|452208385|ref|YP_007488507.1| - 1.7 9.1 6.9 64 4.1 0.2 3.7 3 1 1 4 4 4 0 Zinc-finger double domain zf-RING_4 PF14570.1 gi|452208385|ref|YP_007488507.1| - 1.7 8.3 7.7 9.7 5.8 0.1 3.2 3 0 0 3 3 3 0 RING/Ubox like zinc-binding domain DUF3795 PF12675.2 gi|452208385|ref|YP_007488507.1| - 1.8 8.7 6.9 9.9 6.4 4.8 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF3795) zinc-ribbons_6 PF07191.7 gi|452208385|ref|YP_007488507.1| - 2 8.2 7.5 6.9 6.5 0.3 2.4 2 1 0 2 2 2 0 zinc-ribbons zf-ZPR1 PF03367.8 gi|452208385|ref|YP_007488507.1| - 2.3 7.3 4.5 1.4 8.0 0.2 2.3 2 1 0 2 2 2 0 ZPR1 zinc-finger domain zf-UBP PF02148.14 gi|452208385|ref|YP_007488507.1| - 3.2 7.9 7.8 1.2 9.3 0.9 2.3 2 1 0 2 2 2 0 Zn-finger in ubiquitin-hydrolases and other protein zf-IS66 PF13005.2 gi|452208385|ref|YP_007488507.1| - 3.9 7.5 11.6 4.7 7.2 0.0 3.8 3 1 2 5 5 5 0 zinc-finger binding domain of transposase IS66 DUF4379 PF14311.1 gi|452208385|ref|YP_007488507.1| - 4.5 7.1 11.4 9 6.2 0.2 3.5 3 1 1 4 4 3 0 Domain of unknown function (DUF4379) DUF164 PF02591.10 gi|452208385|ref|YP_007488507.1| - 4.7 7.1 9.2 6.1 6.7 0.0 3.7 3 1 1 4 4 4 0 Putative zinc ribbon domain IBR PF01485.16 gi|452208385|ref|YP_007488507.1| - 4.8 7.1 12.3 18 5.2 0.1 3.5 2 1 0 2 2 2 0 IBR domain zf-C4_Topoisom PF01396.14 gi|452208385|ref|YP_007488507.1| - 5.4 6.6 9.5 2.4 7.7 0.0 2.9 3 1 1 4 4 3 0 Topoisomerase DNA binding C4 zinc finger Elf1 PF05129.8 gi|452208385|ref|YP_007488507.1| - 5.7 6.7 10.6 5.7 6.7 0.2 3.1 2 2 0 2 2 2 0 Transcription elongation factor Elf1 like PhnA_Zn_Ribbon PF08274.7 gi|452208385|ref|YP_007488507.1| - 6.6 6.6 16.7 9.2 6.1 0.1 4.0 3 1 0 3 3 3 0 PhnA Zinc-Ribbon DUF2082 PF09855.4 gi|452208385|ref|YP_007488507.1| - 8.5 6.3 7.3 2.4 8.0 0.6 2.8 2 2 1 3 3 3 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) Ogr_Delta PF04606.7 gi|452208385|ref|YP_007488507.1| - 10 5.9 10.0 14 5.4 0.1 3.1 2 1 0 2 2 2 0 Ogr/Delta-like zinc finger AAA PF00004.24 gi|452208386|ref|YP_007488508.1| - 3.7e-64 214.8 0.0 4.4e-43 146.6 0.0 2.3 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|452208386|ref|YP_007488508.1| - 6.3e-11 42.1 0.0 3.2e-05 23.6 0.0 3.0 3 1 0 3 3 2 2 AAA domain (dynein-related subfamily) AAA_17 PF13207.1 gi|452208386|ref|YP_007488508.1| - 6.6e-11 43.0 0.7 0.00011 22.9 0.5 3.2 2 1 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|452208386|ref|YP_007488508.1| - 8.2e-11 42.2 7.7 0.00011 22.2 0.0 4.2 2 2 2 4 4 4 2 AAA ATPase domain AAA_33 PF13671.1 gi|452208386|ref|YP_007488508.1| - 1.7e-10 40.9 0.0 5.8e-05 23.0 0.0 2.7 2 0 0 2 2 2 2 AAA domain AAA_2 PF07724.9 gi|452208386|ref|YP_007488508.1| - 4.4e-10 39.7 0.0 1.3e-05 25.1 0.0 2.2 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_22 PF13401.1 gi|452208386|ref|YP_007488508.1| - 7.2e-10 39.1 0.3 0.0022 18.1 0.0 3.5 2 2 1 3 3 3 2 AAA domain RuvB_N PF05496.7 gi|452208386|ref|YP_007488508.1| - 5.4e-09 35.4 0.1 0.0013 17.8 0.0 3.2 4 0 0 4 4 3 2 Holliday junction DNA helicase ruvB N-terminus AAA_19 PF13245.1 gi|452208386|ref|YP_007488508.1| - 5.7e-09 35.6 0.7 0.00061 19.4 0.0 3.3 2 0 0 2 2 2 2 Part of AAA domain AAA_28 PF13521.1 gi|452208386|ref|YP_007488508.1| - 4.8e-08 33.1 0.0 0.0074 16.2 0.0 2.7 2 0 0 2 2 2 2 AAA domain AAA_14 PF13173.1 gi|452208386|ref|YP_007488508.1| - 3.3e-07 30.2 0.0 0.0075 16.1 0.0 2.3 2 0 0 2 2 2 2 AAA domain IstB_IS21 PF01695.12 gi|452208386|ref|YP_007488508.1| - 8.5e-07 28.5 0.2 0.022 14.1 0.0 2.3 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_18 PF13238.1 gi|452208386|ref|YP_007488508.1| - 1.3e-06 28.7 0.0 0.049 13.9 0.0 2.6 2 0 0 2 2 2 2 AAA domain Zeta_toxin PF06414.7 gi|452208386|ref|YP_007488508.1| - 4.3e-06 25.9 0.0 0.066 12.3 0.0 2.4 2 0 0 2 2 2 2 Zeta toxin AAA_29 PF13555.1 gi|452208386|ref|YP_007488508.1| - 9.1e-06 25.1 0.0 0.003 17.0 0.1 2.4 2 0 0 2 2 2 1 P-loop containing region of AAA domain NACHT PF05729.7 gi|452208386|ref|YP_007488508.1| - 1.1e-05 25.1 0.1 0.18 11.4 0.0 3.3 4 0 0 4 4 4 2 NACHT domain RNA_helicase PF00910.17 gi|452208386|ref|YP_007488508.1| - 1.3e-05 25.3 0.0 0.057 13.5 0.0 2.3 2 0 0 2 2 2 2 RNA helicase Mg_chelatase PF01078.16 gi|452208386|ref|YP_007488508.1| - 2.3e-05 23.6 0.2 0.015 14.4 0.0 2.3 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI Sigma54_activ_2 PF14532.1 gi|452208386|ref|YP_007488508.1| - 4.2e-05 23.6 0.0 0.066 13.2 0.0 2.4 2 0 0 2 2 2 1 Sigma-54 interaction domain Sigma54_activat PF00158.21 gi|452208386|ref|YP_007488508.1| - 4.9e-05 22.8 0.0 0.041 13.3 0.0 2.7 2 0 0 2 2 2 1 Sigma-54 interaction domain CDC48_2 PF02933.12 gi|452208386|ref|YP_007488508.1| - 5.1e-05 22.8 0.0 0.0001 21.8 0.0 1.5 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), domain 2 DUF815 PF05673.8 gi|452208386|ref|YP_007488508.1| - 7e-05 21.8 0.0 0.03 13.2 0.0 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF815) AAA_24 PF13479.1 gi|452208386|ref|YP_007488508.1| - 0.00014 21.5 0.0 0.092 12.3 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.1 gi|452208386|ref|YP_007488508.1| - 0.00016 21.2 0.1 0.35 10.4 0.1 2.5 2 0 0 2 2 2 2 AAA domain ABC_tran PF00005.22 gi|452208386|ref|YP_007488508.1| - 0.00027 21.2 0.0 0.6 10.3 0.0 2.4 2 0 0 2 2 2 2 ABC transporter CDC48_N PF02359.13 gi|452208386|ref|YP_007488508.1| - 0.00028 20.7 0.1 0.00098 19.0 0.0 2.0 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), N-terminal domain NTPase_1 PF03266.10 gi|452208386|ref|YP_007488508.1| - 0.00041 20.1 0.0 0.27 10.9 0.0 2.6 2 0 0 2 2 2 1 NTPase AAA_25 PF13481.1 gi|452208386|ref|YP_007488508.1| - 0.00045 19.6 7.2 0.59 9.5 0.1 3.8 2 2 2 4 4 4 1 AAA domain TIP49 PF06068.8 gi|452208386|ref|YP_007488508.1| - 0.00057 18.7 0.0 0.13 10.9 0.0 2.3 2 0 0 2 2 2 1 TIP49 C-terminus UPF0079 PF02367.12 gi|452208386|ref|YP_007488508.1| - 0.00087 18.9 0.0 0.71 9.5 0.0 2.4 2 0 0 2 2 2 1 Uncharacterised P-loop hydrolase UPF0079 AAA_23 PF13476.1 gi|452208386|ref|YP_007488508.1| - 0.001 19.4 0.0 0.1 12.9 0.0 2.1 2 0 0 2 2 2 1 AAA domain Arch_ATPase PF01637.13 gi|452208386|ref|YP_007488508.1| - 0.0012 18.5 0.0 2 8.0 0.0 2.8 2 2 1 3 3 3 1 Archaeal ATPase AAA_3 PF07726.6 gi|452208386|ref|YP_007488508.1| - 0.0013 18.2 0.0 0.67 9.5 0.0 2.4 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) MobB PF03205.9 gi|452208386|ref|YP_007488508.1| - 0.002 17.8 0.1 0.068 12.8 0.0 2.6 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B cobW PF02492.14 gi|452208386|ref|YP_007488508.1| - 0.0029 17.0 0.1 0.23 10.8 0.0 2.3 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain CPT PF07931.7 gi|452208386|ref|YP_007488508.1| - 0.0048 16.5 0.1 5 6.7 0.0 3.1 3 0 0 3 3 3 0 Chloramphenicol phosphotransferase-like protein Miro PF08477.8 gi|452208386|ref|YP_007488508.1| - 0.0069 16.8 0.0 0.14 12.6 0.0 2.3 2 0 0 2 2 2 1 Miro-like protein T2SE PF00437.15 gi|452208386|ref|YP_007488508.1| - 0.0099 14.8 0.0 0.5 9.2 0.0 2.2 2 0 0 2 2 2 1 Type II/IV secretion system protein PhoH PF02562.11 gi|452208386|ref|YP_007488508.1| - 0.011 15.0 0.8 0.37 9.9 0.0 2.3 2 0 0 2 2 2 0 PhoH-like protein KaiC PF06745.8 gi|452208386|ref|YP_007488508.1| - 0.015 14.3 0.1 0.42 9.6 0.0 2.2 2 0 0 2 2 2 0 KaiC AAA_11 PF13086.1 gi|452208386|ref|YP_007488508.1| - 0.024 14.2 0.0 1.5 8.3 0.0 2.2 2 0 0 2 2 2 0 AAA domain Parvo_NS1 PF01057.12 gi|452208386|ref|YP_007488508.1| - 0.024 13.5 0.0 0.54 9.0 0.0 2.1 2 0 0 2 2 2 0 Parvovirus non-structural protein NS1 NB-ARC PF00931.17 gi|452208386|ref|YP_007488508.1| - 0.028 13.2 0.9 4.4 6.0 0.0 2.5 3 0 0 3 3 2 0 NB-ARC domain X_fast-SP_rel PF06669.6 gi|452208386|ref|YP_007488508.1| - 0.039 13.8 2.4 38 4.3 0.0 3.9 4 0 0 4 4 3 0 Xylella fastidiosa surface protein related AAA_21 PF13304.1 gi|452208386|ref|YP_007488508.1| - 0.044 13.7 0.0 10 5.9 0.0 2.3 2 0 0 2 2 2 0 AAA domain ATP_bind_1 PF03029.12 gi|452208386|ref|YP_007488508.1| - 0.078 12.5 0.1 0.65 9.4 0.0 2.1 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein PduV-EutP PF10662.4 gi|452208386|ref|YP_007488508.1| - 0.12 11.8 0.0 2.2 7.7 0.0 2.2 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation MCM PF00493.18 gi|452208386|ref|YP_007488508.1| - 0.19 10.4 0.0 7.8 5.1 0.0 2.1 2 0 0 2 2 2 0 MCM2/3/5 family DUF258 PF03193.11 gi|452208386|ref|YP_007488508.1| - 0.2 10.8 0.0 1 8.5 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function, DUF258 DAP3 PF10236.4 gi|452208386|ref|YP_007488508.1| - 0.21 10.4 0.0 9 5.1 0.0 2.1 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 SRPRB PF09439.5 gi|452208386|ref|YP_007488508.1| - 0.24 10.6 0.0 3 7.0 0.0 2.1 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit UPF0104 PF03706.8 gi|452208387|ref|YP_007488509.1| - 0.026 13.8 2.4 0.028 13.7 1.6 1.0 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0104) Col_cuticle_N PF01484.12 gi|452208387|ref|YP_007488509.1| - 0.46 10.2 3.9 0.34 10.6 1.4 1.7 2 0 0 2 2 2 0 Nematode cuticle collagen N-terminal domain Bac_rhodopsin PF01036.13 gi|452208388|ref|YP_007488510.1| - 1e-69 234.2 21.5 1.1e-69 234.1 14.9 1.0 1 0 0 1 1 1 1 Bacteriorhodopsin-like protein DUF4131 PF13567.1 gi|452208388|ref|YP_007488510.1| - 0.013 14.9 9.8 1 8.7 6.8 2.2 1 1 0 1 1 1 0 Domain of unknown function (DUF4131) DUF645 PF04875.7 gi|452208388|ref|YP_007488510.1| - 0.073 12.7 0.5 0.33 10.6 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function, DUF645 DUF21 PF01595.15 gi|452208388|ref|YP_007488510.1| - 0.88 8.8 7.0 2.2 7.5 4.8 1.7 1 1 0 1 1 1 0 Domain of unknown function DUF21 NMN_transporter PF04973.7 gi|452208388|ref|YP_007488510.1| - 1.7 8.0 12.3 0.11 11.9 4.9 1.7 2 0 0 2 2 2 0 Nicotinamide mononucleotide transporter SirB PF04247.7 gi|452208388|ref|YP_007488510.1| - 1.9 8.1 8.3 1.7 8.4 3.9 2.1 2 0 0 2 2 2 0 Invasion gene expression up-regulator, SirB SlyX PF04102.7 gi|452208389|ref|YP_007488511.1| - 0.00016 21.9 1.5 0.00019 21.7 0.1 1.7 2 0 0 2 2 2 1 SlyX Spc7 PF08317.6 gi|452208389|ref|YP_007488511.1| - 0.00019 20.2 1.2 0.00021 20.0 0.9 1.1 1 0 0 1 1 1 1 Spc7 kinetochore protein HSBP1 PF06825.7 gi|452208389|ref|YP_007488511.1| - 0.0023 17.4 2.3 0.089 12.3 1.6 2.5 1 1 0 1 1 1 1 Heat shock factor binding protein 1 FlaC_arch PF05377.6 gi|452208389|ref|YP_007488511.1| - 0.004 17.0 0.4 2.1 8.3 0.2 2.4 2 0 0 2 2 2 1 Flagella accessory protein C (FlaC) IncA PF04156.9 gi|452208389|ref|YP_007488511.1| - 0.004 16.7 1.9 0.0045 16.6 1.3 1.2 1 0 0 1 1 1 1 IncA protein Fib_alpha PF08702.5 gi|452208389|ref|YP_007488511.1| - 0.0059 16.7 2.1 0.0076 16.3 1.5 1.2 1 0 0 1 1 1 1 Fibrinogen alpha/beta chain family Ead_Ea22 PF13935.1 gi|452208389|ref|YP_007488511.1| - 0.02 15.2 2.9 0.026 14.8 2.0 1.2 1 0 0 1 1 1 0 Ead/Ea22-like protein Atg14 PF10186.4 gi|452208389|ref|YP_007488511.1| - 0.026 13.4 0.5 0.03 13.2 0.3 1.1 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 Med9 PF07544.8 gi|452208389|ref|YP_007488511.1| - 0.038 13.7 1.4 0.069 12.8 1.0 1.5 1 0 0 1 1 1 0 RNA polymerase II transcription mediator complex subunit 9 ATG16 PF08614.6 gi|452208389|ref|YP_007488511.1| - 0.056 13.2 5.7 0.066 13.0 4.0 1.1 1 0 0 1 1 1 0 Autophagy protein 16 (ATG16) SNARE PF05739.14 gi|452208389|ref|YP_007488511.1| - 0.062 13.0 2.3 0.33 10.6 1.6 2.1 1 1 0 1 1 1 0 SNARE domain AAA_13 PF13166.1 gi|452208389|ref|YP_007488511.1| - 0.074 11.5 3.7 0.084 11.3 2.6 1.0 1 0 0 1 1 1 0 AAA domain OmpH PF03938.9 gi|452208389|ref|YP_007488511.1| - 0.076 12.9 2.4 0.088 12.7 1.7 1.1 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) YwqJ-deaminase PF14431.1 gi|452208389|ref|YP_007488511.1| - 0.094 12.5 0.1 0.14 12.0 0.1 1.3 1 1 0 1 1 1 0 YwqJ-like deaminase HemX PF04375.9 gi|452208389|ref|YP_007488511.1| - 0.11 11.0 2.2 0.13 10.7 1.5 1.1 1 0 0 1 1 1 0 HemX Zn-ribbon_8 PF09723.5 gi|452208389|ref|YP_007488511.1| - 0.13 12.2 1.8 1.5 8.8 0.1 2.4 1 1 1 2 2 2 0 Zinc ribbon domain TMF_TATA_bd PF12325.3 gi|452208389|ref|YP_007488511.1| - 0.18 11.5 5.5 0.25 11.0 3.8 1.3 1 0 0 1 1 1 0 TATA element modulatory factor 1 TATA binding TMF_DNA_bd PF12329.3 gi|452208389|ref|YP_007488511.1| - 0.23 11.3 5.8 0.067 13.0 1.2 2.0 1 1 1 2 2 2 0 TATA element modulatory factor 1 DNA binding V_ATPase_I PF01496.14 gi|452208389|ref|YP_007488511.1| - 0.24 9.2 0.6 0.26 9.1 0.4 1.0 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family DUF812 PF05667.6 gi|452208389|ref|YP_007488511.1| - 0.25 9.8 8.1 0.29 9.5 5.6 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF812) TF_Zn_Ribbon PF08271.7 gi|452208389|ref|YP_007488511.1| - 0.25 10.7 3.8 0.76 9.1 2.6 1.9 1 1 0 1 1 1 0 TFIIB zinc-binding DUF848 PF05852.6 gi|452208389|ref|YP_007488511.1| - 0.31 10.8 3.2 0.6 9.9 2.2 1.6 1 1 0 1 1 1 0 Gammaherpesvirus protein of unknown function (DUF848) DivIC PF04977.10 gi|452208389|ref|YP_007488511.1| - 0.41 10.1 3.5 0.32 10.5 1.1 1.8 1 1 1 2 2 2 0 Septum formation initiator DUF3450 PF11932.3 gi|452208389|ref|YP_007488511.1| - 0.49 9.6 5.5 0.63 9.2 3.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3450) CENP-Q PF13094.1 gi|452208389|ref|YP_007488511.1| - 0.5 10.3 4.7 0.74 9.8 3.2 1.3 1 1 0 1 1 1 0 CENP-Q, a CENPA-CAD centromere complex subunit PspA_IM30 PF04012.7 gi|452208389|ref|YP_007488511.1| - 1.3 8.3 10.2 0.6 9.4 1.4 2.0 1 1 1 2 2 2 0 PspA/IM30 family DUF4200 PF13863.1 gi|452208389|ref|YP_007488511.1| - 1.4 8.8 7.7 4.4 7.2 5.4 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4200) APG6 PF04111.7 gi|452208389|ref|YP_007488511.1| - 7.5 5.5 6.7 9.5 5.1 4.6 1.1 1 0 0 1 1 1 0 Autophagy protein Apg6 DNA_ligase_ZBD PF03119.11 gi|452208389|ref|YP_007488511.1| - 8.5 6.1 8.1 0.3 10.8 0.5 2.3 3 0 0 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain SBF PF01758.11 gi|452208390|ref|YP_007488512.1| - 6.4e-32 110.4 9.8 1.3e-31 109.4 6.8 1.5 1 0 0 1 1 1 1 Sodium Bile acid symporter family DUF4137 PF13593.1 gi|452208390|ref|YP_007488512.1| - 4.7e-19 68.6 14.2 1.4e-18 67.0 9.8 1.6 1 1 0 1 1 1 1 SBF-like CPA transporter family (DUF4137) DUF393 PF04134.7 gi|452208391|ref|YP_007488513.1| - 1.7e-09 38.7 0.7 2.2e-09 38.4 0.5 1.1 1 0 0 1 1 1 1 Protein of unknown function, DUF393 MMR_HSR1 PF01926.18 gi|452208392|ref|YP_007488514.1| - 1.2e-15 57.4 0.0 1.5e-15 57.1 0.0 1.2 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|452208392|ref|YP_007488514.1| - 5.1e-14 51.8 0.1 1e-12 47.6 0.1 2.0 1 1 0 1 1 1 1 Ferrous iron transport protein B GTP_EFTU PF00009.22 gi|452208392|ref|YP_007488514.1| - 2.9e-06 26.8 0.0 0.00052 19.5 0.0 2.2 2 0 0 2 2 2 1 Elongation factor Tu GTP binding domain AAA_18 PF13238.1 gi|452208392|ref|YP_007488514.1| - 0.00075 19.7 0.0 0.0011 19.2 0.0 1.3 1 0 0 1 1 1 1 AAA domain AIG1 PF04548.11 gi|452208392|ref|YP_007488514.1| - 0.0022 17.1 0.0 0.0036 16.4 0.0 1.3 1 1 0 1 1 1 1 AIG1 family Miro PF08477.8 gi|452208392|ref|YP_007488514.1| - 0.0045 17.4 0.1 0.037 14.5 0.0 2.2 1 1 1 2 2 2 1 Miro-like protein MobB PF03205.9 gi|452208392|ref|YP_007488514.1| - 0.0056 16.3 0.6 0.039 13.6 0.1 2.2 2 1 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B Dynamin_N PF00350.18 gi|452208392|ref|YP_007488514.1| - 0.0059 16.4 0.5 0.075 12.8 0.2 2.1 1 1 1 2 2 2 1 Dynamin family ABC_tran PF00005.22 gi|452208392|ref|YP_007488514.1| - 0.0069 16.6 0.0 0.0079 16.4 0.0 1.4 1 1 0 1 1 1 1 ABC transporter DUF258 PF03193.11 gi|452208392|ref|YP_007488514.1| - 0.009 15.2 0.1 0.019 14.1 0.1 1.5 1 1 0 1 1 1 1 Protein of unknown function, DUF258 Ras PF00071.17 gi|452208392|ref|YP_007488514.1| - 0.014 14.7 0.2 0.045 13.1 0.0 1.9 3 0 0 3 3 3 0 Ras family AAA_29 PF13555.1 gi|452208392|ref|YP_007488514.1| - 0.024 14.1 0.0 0.056 12.9 0.0 1.6 2 0 0 2 2 1 0 P-loop containing region of AAA domain TIP49 PF06068.8 gi|452208392|ref|YP_007488514.1| - 0.029 13.1 0.2 0.044 12.4 0.1 1.2 1 0 0 1 1 1 0 TIP49 C-terminus AAA_10 PF12846.2 gi|452208392|ref|YP_007488514.1| - 0.031 13.7 0.0 0.041 13.3 0.0 1.3 1 0 0 1 1 1 0 AAA-like domain AAA_17 PF13207.1 gi|452208392|ref|YP_007488514.1| - 0.037 14.8 0.0 0.095 13.5 0.0 1.7 1 1 0 1 1 1 0 AAA domain ATP_bind_1 PF03029.12 gi|452208392|ref|YP_007488514.1| - 0.039 13.5 0.5 1.2 8.5 0.0 2.4 3 0 0 3 3 2 0 Conserved hypothetical ATP binding protein AAA_25 PF13481.1 gi|452208392|ref|YP_007488514.1| - 0.078 12.3 0.2 0.34 10.2 0.1 2.1 1 1 0 1 1 1 0 AAA domain Arf PF00025.16 gi|452208392|ref|YP_007488514.1| - 0.11 11.7 0.0 2.8 7.1 0.0 2.1 2 0 0 2 2 2 0 ADP-ribosylation factor family PduV-EutP PF10662.4 gi|452208392|ref|YP_007488514.1| - 0.11 11.9 0.0 0.37 10.2 0.0 1.9 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation Arch_ATPase PF01637.13 gi|452208392|ref|YP_007488514.1| - 0.12 12.0 0.0 0.22 11.1 0.0 1.3 1 0 0 1 1 1 0 Archaeal ATPase DUF389 PF04087.9 gi|452208393|ref|YP_007488515.1| - 1.9e-37 128.2 20.1 1.9e-37 128.2 13.9 1.9 3 0 0 3 3 3 1 Domain of unknown function (DUF389) PTS_EIIC_2 PF13303.1 gi|452208393|ref|YP_007488515.1| - 0.21 10.3 22.0 0.38 9.5 15.3 1.4 1 0 0 1 1 1 0 Phosphotransferase system, EIIC SIMPL PF04402.9 gi|452208394|ref|YP_007488516.1| - 4.9e-31 108.2 8.9 5.8e-31 107.9 6.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF541) MaoC_dehydratas PF01575.14 gi|452208395|ref|YP_007488517.1| - 3.6e-15 55.4 0.0 4.4e-15 55.1 0.0 1.1 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.1 gi|452208395|ref|YP_007488517.1| - 6.9e-08 32.3 0.0 1e-07 31.8 0.0 1.2 1 0 0 1 1 1 1 N-terminal half of MaoC dehydratase FabA PF07977.8 gi|452208395|ref|YP_007488517.1| - 0.059 12.8 0.0 0.079 12.4 0.0 1.2 1 0 0 1 1 1 0 FabA-like domain NOG1 PF06858.9 gi|452208396|ref|YP_007488518.1| - 1.7e-21 75.7 0.0 3.2e-21 74.9 0.0 1.4 1 0 0 1 1 1 1 Nucleolar GTP-binding protein 1 (NOG1) MMR_HSR1 PF01926.18 gi|452208396|ref|YP_007488518.1| - 8.7e-20 70.8 0.0 1.7e-19 69.9 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|452208396|ref|YP_007488518.1| - 7.8e-13 47.9 0.0 1.2e-12 47.4 0.0 1.2 1 0 0 1 1 1 1 Ferrous iron transport protein B Miro PF08477.8 gi|452208396|ref|YP_007488518.1| - 6.4e-08 33.1 0.0 1.3e-07 32.1 0.0 1.5 1 0 0 1 1 1 1 Miro-like protein AIG1 PF04548.11 gi|452208396|ref|YP_007488518.1| - 2e-05 23.7 0.0 3.2e-05 23.1 0.0 1.3 1 0 0 1 1 1 1 AIG1 family Dynamin_N PF00350.18 gi|452208396|ref|YP_007488518.1| - 3.2e-05 23.8 0.1 0.0074 16.1 0.0 2.4 1 1 1 2 2 2 1 Dynamin family SRPRB PF09439.5 gi|452208396|ref|YP_007488518.1| - 3.4e-05 23.1 0.0 0.00057 19.1 0.0 2.2 2 0 0 2 2 2 1 Signal recognition particle receptor beta subunit GTP_EFTU PF00009.22 gi|452208396|ref|YP_007488518.1| - 7.9e-05 22.1 0.0 0.0003 20.2 0.0 1.9 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain Arf PF00025.16 gi|452208396|ref|YP_007488518.1| - 0.0012 18.1 0.0 0.013 14.7 0.0 2.5 2 1 0 2 2 2 1 ADP-ribosylation factor family DUF258 PF03193.11 gi|452208396|ref|YP_007488518.1| - 0.014 14.5 0.0 0.049 12.8 0.0 1.8 1 1 0 1 1 1 0 Protein of unknown function, DUF258 AAA_16 PF13191.1 gi|452208396|ref|YP_007488518.1| - 0.077 12.9 0.1 0.76 9.7 0.0 2.4 1 1 0 2 2 2 0 AAA ATPase domain Ras PF00071.17 gi|452208396|ref|YP_007488518.1| - 0.081 12.3 0.0 0.21 10.9 0.0 1.7 1 1 0 1 1 1 0 Ras family MobB PF03205.9 gi|452208396|ref|YP_007488518.1| - 0.14 11.8 0.1 0.37 10.4 0.0 1.7 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B ATP_bind_1 PF03029.12 gi|452208396|ref|YP_007488518.1| - 0.19 11.2 0.5 19 4.6 0.1 2.8 1 1 1 2 2 2 0 Conserved hypothetical ATP binding protein AAA_25 PF13481.1 gi|452208396|ref|YP_007488518.1| - 0.33 10.3 2.0 16 4.7 0.2 2.9 1 1 1 3 3 3 0 AAA domain Hjc PF01870.13 gi|452208397|ref|YP_007488519.1| - 7.3e-28 96.0 0.0 9.4e-28 95.6 0.0 1.1 1 0 0 1 1 1 1 Archaeal holliday junction resolvase (hjc) DUF2089 PF09862.4 gi|452208397|ref|YP_007488519.1| - 0.0048 16.6 0.0 0.0082 15.9 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF2089) DUF1117 PF06547.7 gi|452208397|ref|YP_007488519.1| - 0.12 12.4 0.0 0.27 11.3 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1117) dCMP_cyt_deam_1 PF00383.17 gi|452208398|ref|YP_007488520.1| - 2.6e-13 49.4 0.0 3.6e-13 49.0 0.0 1.1 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region XOO_2897-deam PF14440.1 gi|452208398|ref|YP_007488520.1| - 0.0047 16.6 0.0 0.0057 16.3 0.0 1.1 1 0 0 1 1 1 1 Xanthomonas XOO_2897-like deaminase MafB19-deam PF14437.1 gi|452208398|ref|YP_007488520.1| - 0.012 15.2 0.0 0.016 14.8 0.0 1.1 1 0 0 1 1 1 0 MafB19-like deaminase Bd3614-deam PF14439.1 gi|452208398|ref|YP_007488520.1| - 0.11 12.3 0.5 0.19 11.5 0.3 1.5 1 1 0 1 1 1 0 Bd3614-like deaminase ABC_tran PF00005.22 gi|452208399|ref|YP_007488521.1| - 6.6e-39 133.3 0.0 2.5e-20 73.1 0.0 2.9 2 1 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|452208399|ref|YP_007488521.1| - 1.8e-13 51.1 0.2 0.0066 16.4 0.0 4.1 3 1 1 4 4 4 3 AAA domain SMC_N PF02463.14 gi|452208399|ref|YP_007488521.1| - 3.7e-13 49.2 1.5 0.0011 18.2 0.0 4.1 4 0 0 4 4 4 2 RecF/RecN/SMC N terminal domain RLI PF04068.10 gi|452208399|ref|YP_007488521.1| - 1.7e-12 46.6 0.4 3.1e-12 45.8 0.3 1.5 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI AAA_17 PF13207.1 gi|452208399|ref|YP_007488521.1| - 1.7e-09 38.5 0.1 2e-05 25.3 0.0 2.7 2 1 0 2 2 2 2 AAA domain AAA_18 PF13238.1 gi|452208399|ref|YP_007488521.1| - 1.2e-05 25.5 0.0 0.026 14.8 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA PF00004.24 gi|452208399|ref|YP_007488521.1| - 2e-05 24.8 0.0 0.31 11.2 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|452208399|ref|YP_007488521.1| - 2.7e-05 24.2 0.4 0.19 11.6 0.0 2.6 2 2 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.1 gi|452208399|ref|YP_007488521.1| - 3.1e-05 24.3 0.1 0.16 12.3 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|452208399|ref|YP_007488521.1| - 3.4e-05 24.0 0.0 0.048 13.8 0.0 2.8 2 1 0 2 2 2 1 AAA domain RNA_helicase PF00910.17 gi|452208399|ref|YP_007488521.1| - 4.4e-05 23.6 0.0 0.46 10.6 0.0 2.5 2 0 0 2 2 2 2 RNA helicase AAA_29 PF13555.1 gi|452208399|ref|YP_007488521.1| - 0.00023 20.6 0.0 0.96 9.0 0.0 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain NACHT PF05729.7 gi|452208399|ref|YP_007488521.1| - 0.00029 20.5 0.0 0.95 9.1 0.0 2.4 2 0 0 2 2 2 2 NACHT domain AAA_25 PF13481.1 gi|452208399|ref|YP_007488521.1| - 0.00029 20.2 0.0 0.15 11.4 0.0 2.9 2 1 0 2 2 2 1 AAA domain Rad17 PF03215.10 gi|452208399|ref|YP_007488521.1| - 0.00065 18.5 0.0 0.91 8.1 0.0 2.2 2 0 0 2 2 2 2 Rad17 cell cycle checkpoint protein DUF258 PF03193.11 gi|452208399|ref|YP_007488521.1| - 0.00076 18.7 0.0 0.43 9.7 0.0 2.4 2 0 0 2 2 2 1 Protein of unknown function, DUF258 Fer4 PF00037.22 gi|452208399|ref|YP_007488521.1| - 0.00094 18.6 3.0 0.00094 18.6 2.1 3.1 3 1 0 3 3 3 1 4Fe-4S binding domain AAA_14 PF13173.1 gi|452208399|ref|YP_007488521.1| - 0.0013 18.5 0.0 1.2 9.0 0.0 2.9 3 0 0 3 3 3 1 AAA domain RuvB_N PF05496.7 gi|452208399|ref|YP_007488521.1| - 0.0022 17.0 0.0 0.71 8.8 0.0 2.7 3 0 0 3 3 3 1 Holliday junction DNA helicase ruvB N-terminus Fer4_6 PF12837.2 gi|452208399|ref|YP_007488521.1| - 0.0023 17.7 13.4 0.0024 17.6 0.7 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain AAA_33 PF13671.1 gi|452208399|ref|YP_007488521.1| - 0.003 17.4 0.1 0.27 11.0 0.1 2.9 3 1 0 3 3 2 1 AAA domain MobB PF03205.9 gi|452208399|ref|YP_007488521.1| - 0.003 17.2 0.0 1.4 8.5 0.0 3.0 4 0 0 4 4 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_24 PF13479.1 gi|452208399|ref|YP_007488521.1| - 0.0033 17.0 0.0 1.4 8.4 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|452208399|ref|YP_007488521.1| - 0.0045 16.7 0.1 0.72 9.6 0.0 3.2 3 0 0 3 3 3 1 Part of AAA domain NB-ARC PF00931.17 gi|452208399|ref|YP_007488521.1| - 0.0072 15.2 0.0 0.28 10.0 0.0 2.1 2 0 0 2 2 2 1 NB-ARC domain AAA_28 PF13521.1 gi|452208399|ref|YP_007488521.1| - 0.008 16.1 0.1 1.9 8.4 0.0 3.0 3 0 0 3 3 3 1 AAA domain NTPase_1 PF03266.10 gi|452208399|ref|YP_007488521.1| - 0.01 15.5 0.5 5.4 6.7 0.1 2.9 3 0 0 3 3 2 0 NTPase AAA_5 PF07728.9 gi|452208399|ref|YP_007488521.1| - 0.011 15.4 0.0 1.4 8.6 0.0 2.9 3 0 0 3 3 3 0 AAA domain (dynein-related subfamily) SbcCD_C PF13558.1 gi|452208399|ref|YP_007488521.1| - 0.013 15.4 0.1 3.2 7.7 0.1 2.8 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit DUF87 PF01935.12 gi|452208399|ref|YP_007488521.1| - 0.014 15.2 0.0 13 5.5 0.0 3.3 3 0 0 3 3 3 0 Domain of unknown function DUF87 Fer4_7 PF12838.2 gi|452208399|ref|YP_007488521.1| - 0.016 15.5 9.0 0.037 14.4 6.3 1.7 1 0 0 1 1 1 0 4Fe-4S dicluster domain SRP54 PF00448.17 gi|452208399|ref|YP_007488521.1| - 0.019 14.4 0.1 3.3 7.0 0.0 2.4 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_10 PF12846.2 gi|452208399|ref|YP_007488521.1| - 0.019 14.3 0.5 0.84 9.0 0.1 2.8 2 1 0 2 2 2 0 AAA-like domain Fer4_9 PF13187.1 gi|452208399|ref|YP_007488521.1| - 0.058 13.6 10.6 0.11 12.7 7.3 1.5 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|452208399|ref|YP_007488521.1| - 0.13 12.2 11.7 0.16 11.9 1.1 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Thymidylate_kin PF02223.12 gi|452208399|ref|YP_007488521.1| - 0.16 11.3 0.0 11 5.3 0.0 2.3 2 0 0 2 2 2 0 Thymidylate kinase AAA_13 PF13166.1 gi|452208399|ref|YP_007488521.1| - 0.18 10.2 0.0 11 4.2 0.0 2.1 2 0 0 2 2 2 0 AAA domain Fer4_10 PF13237.1 gi|452208399|ref|YP_007488521.1| - 0.18 11.6 10.6 0.34 10.7 7.4 1.5 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|452208399|ref|YP_007488521.1| - 0.46 10.3 7.7 0.85 9.5 5.3 1.5 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|452208399|ref|YP_007488521.1| - 0.99 10.2 9.9 0.091 13.5 0.8 2.1 1 1 1 2 2 2 0 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|452208399|ref|YP_007488521.1| - 3.6 8.1 13.7 2.9 8.4 1.2 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_8 PF13183.1 gi|452208399|ref|YP_007488521.1| - 4.6 7.3 8.7 8.4 6.5 6.0 1.4 1 0 0 1 1 1 0 4Fe-4S dicluster domain Thi4 PF01946.12 gi|452208400|ref|YP_007488522.1| - 0.011 14.9 0.1 0.012 14.6 0.1 1.1 1 0 0 1 1 1 0 Thi4 family Colicin_V PF02674.11 gi|452208400|ref|YP_007488522.1| - 0.04 13.7 1.8 0.046 13.5 1.2 1.1 1 0 0 1 1 1 0 Colicin V production protein CoA_transf_3 PF02515.12 gi|452208400|ref|YP_007488522.1| - 0.068 12.4 0.4 0.067 12.4 0.3 1.1 1 0 0 1 1 1 0 CoA-transferase family III Claudin_2 PF13903.1 gi|452208400|ref|YP_007488522.1| - 1.2 8.7 6.6 1.8 8.2 4.6 1.3 1 1 0 1 1 1 0 PMP-22/EMP/MP20/Claudin tight junction FtsX PF02687.16 gi|452208400|ref|YP_007488522.1| - 1.6 8.4 5.6 6.7 6.5 3.9 1.8 1 1 0 1 1 1 0 FtsX-like permease family HTH_27 PF13463.1 gi|452208401|ref|YP_007488523.1| - 0.00018 21.7 0.0 0.00022 21.4 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.14 gi|452208401|ref|YP_007488523.1| - 0.0026 17.4 0.2 0.0033 17.1 0.1 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|452208401|ref|YP_007488523.1| - 0.013 14.9 0.0 0.019 14.3 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding GntR PF00392.16 gi|452208401|ref|YP_007488523.1| - 0.013 14.9 0.1 0.02 14.3 0.1 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family TFIIE_alpha PF02002.12 gi|452208401|ref|YP_007488523.1| - 0.03 13.8 0.1 0.051 13.0 0.1 1.4 1 1 1 2 2 2 0 TFIIE alpha subunit HTH_45 PF14947.1 gi|452208401|ref|YP_007488523.1| - 0.033 14.0 0.0 0.042 13.6 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix MarR PF01047.17 gi|452208401|ref|YP_007488523.1| - 0.033 13.8 0.0 0.051 13.2 0.0 1.2 1 0 0 1 1 1 0 MarR family HxlR PF01638.12 gi|452208401|ref|YP_007488523.1| - 0.033 13.7 0.0 0.04 13.5 0.0 1.2 1 0 0 1 1 1 0 HxlR-like helix-turn-helix PadR PF03551.9 gi|452208401|ref|YP_007488523.1| - 0.046 13.4 0.0 0.076 12.7 0.0 1.4 1 1 0 1 1 1 0 Transcriptional regulator PadR-like family DUF505 PF04458.7 gi|452208401|ref|YP_007488523.1| - 0.1 10.7 0.0 0.1 10.7 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF505) DUF2540 PF10802.3 gi|452208401|ref|YP_007488523.1| - 0.14 11.8 0.0 0.48 10.1 0.0 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF2540) PBP_like_2 PF12849.2 gi|452208402|ref|YP_007488524.1| - 5.5e-33 114.6 2.5 1.1e-32 113.6 1.7 1.5 1 1 0 1 1 1 1 PBP superfamily domain PBP_like PF12727.2 gi|452208402|ref|YP_007488524.1| - 2.5e-12 46.1 0.0 4.2e-12 45.4 0.0 1.3 1 0 0 1 1 1 1 PBP superfamily domain UCR_Fe-S_N PF10399.4 gi|452208402|ref|YP_007488524.1| - 0.0019 17.2 0.1 0.0034 16.5 0.0 1.4 1 0 0 1 1 1 1 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal TAT_signal PF10518.4 gi|452208402|ref|YP_007488524.1| - 0.19 11.8 1.6 0.36 10.9 1.1 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence BPD_transp_1 PF00528.17 gi|452208403|ref|YP_007488525.1| - 8.2e-17 61.3 13.1 8.2e-17 61.3 9.1 2.5 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|452208404|ref|YP_007488526.1| - 1.4e-18 67.0 14.5 1.4e-18 67.0 10.0 4.6 1 1 3 4 4 4 1 Binding-protein-dependent transport system inner membrane component DUF4395 PF14340.1 gi|452208404|ref|YP_007488526.1| - 0.43 10.6 0.1 0.43 10.6 0.1 4.0 3 1 0 3 3 3 0 Domain of unknown function (DUF4395) ABC_tran PF00005.22 gi|452208405|ref|YP_007488527.1| - 1.4e-30 106.3 0.0 3e-30 105.3 0.0 1.6 2 0 0 2 2 1 1 ABC transporter AAA_21 PF13304.1 gi|452208405|ref|YP_007488527.1| - 1.2e-13 51.7 0.0 1.1e-06 28.8 0.0 2.1 1 1 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|452208405|ref|YP_007488527.1| - 4.7e-09 35.8 0.0 9.6e-08 31.5 0.0 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|452208405|ref|YP_007488527.1| - 1.8e-05 23.9 0.0 0.064 12.2 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_22 PF13401.1 gi|452208405|ref|YP_007488527.1| - 0.00012 22.2 0.0 0.00043 20.4 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|452208405|ref|YP_007488527.1| - 0.00023 20.6 0.0 0.00065 19.1 0.0 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|452208405|ref|YP_007488527.1| - 0.00027 20.9 0.3 0.0084 16.1 0.0 2.2 2 0 0 2 2 2 1 AAA ATPase domain DUF258 PF03193.11 gi|452208405|ref|YP_007488527.1| - 0.00033 19.8 0.0 0.00059 19.0 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_23 PF13476.1 gi|452208405|ref|YP_007488527.1| - 0.0039 17.5 0.0 0.008 16.5 0.0 1.5 1 0 0 1 1 1 1 AAA domain DeoRC PF00455.17 gi|452208405|ref|YP_007488527.1| - 0.0068 16.0 0.0 0.011 15.3 0.0 1.3 1 0 0 1 1 1 1 DeoR C terminal sensor domain Rad17 PF03215.10 gi|452208405|ref|YP_007488527.1| - 0.0068 15.1 0.0 0.0091 14.7 0.0 1.1 1 0 0 1 1 1 1 Rad17 cell cycle checkpoint protein AAA_25 PF13481.1 gi|452208405|ref|YP_007488527.1| - 0.014 14.7 0.0 0.053 12.9 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.1 gi|452208405|ref|YP_007488527.1| - 0.016 15.0 0.0 0.029 14.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|452208405|ref|YP_007488527.1| - 0.021 14.5 0.0 2.9 7.7 0.0 2.4 2 0 0 2 2 2 0 Part of AAA domain AAA_10 PF12846.2 gi|452208405|ref|YP_007488527.1| - 0.035 13.5 0.0 0.07 12.5 0.0 1.6 1 1 0 1 1 1 0 AAA-like domain AAA_17 PF13207.1 gi|452208405|ref|YP_007488527.1| - 0.052 14.3 0.4 0.13 13.0 0.2 2.1 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|452208405|ref|YP_007488527.1| - 0.073 13.3 0.0 0.19 12.0 0.0 1.7 1 0 0 1 1 1 0 AAA domain PRK PF00485.13 gi|452208405|ref|YP_007488527.1| - 0.078 12.5 0.0 0.18 11.3 0.0 1.6 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family AAA_28 PF13521.1 gi|452208405|ref|YP_007488527.1| - 0.086 12.8 0.2 1 9.2 0.0 2.4 2 1 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.18 gi|452208405|ref|YP_007488527.1| - 0.092 12.7 0.0 0.26 11.2 0.0 1.8 2 0 0 2 2 2 0 50S ribosome-binding GTPase Baculo_PEP_C PF04513.7 gi|452208406|ref|YP_007488528.1| - 2.3e-05 24.2 1.4 0.11 12.3 0.2 3.0 3 1 0 3 3 3 2 Baculovirus polyhedron envelope protein, PEP, C terminus Tropomyosin PF00261.15 gi|452208406|ref|YP_007488528.1| - 0.00023 20.3 3.1 0.033 13.2 0.3 2.4 1 1 1 2 2 2 2 Tropomyosin NPV_P10 PF05531.7 gi|452208406|ref|YP_007488528.1| - 0.0044 17.2 3.9 0.83 9.9 0.2 4.3 3 2 1 4 4 4 1 Nucleopolyhedrovirus P10 protein Reo_sigmaC PF04582.7 gi|452208406|ref|YP_007488528.1| - 0.0056 15.8 1.2 0.0076 15.4 0.3 1.6 1 1 0 1 1 1 1 Reovirus sigma C capsid protein Cast PF10174.4 gi|452208406|ref|YP_007488528.1| - 0.008 14.2 1.8 0.01 13.9 1.3 1.2 1 0 0 1 1 1 1 RIM-binding protein of the cytomatrix active zone Spectrin PF00435.16 gi|452208406|ref|YP_007488528.1| - 0.02 15.1 3.9 0.71 10.1 0.1 3.7 3 1 1 4 4 4 0 Spectrin repeat AAA_13 PF13166.1 gi|452208406|ref|YP_007488528.1| - 0.026 13.0 0.0 0.034 12.6 0.0 1.1 1 0 0 1 1 1 0 AAA domain Snapin_Pallidin PF14712.1 gi|452208406|ref|YP_007488528.1| - 0.026 14.7 0.1 0.21 11.9 0.0 2.5 3 1 0 3 3 3 0 Snapin/Pallidin Laminin_II PF06009.7 gi|452208406|ref|YP_007488528.1| - 0.034 13.8 1.6 0.54 10.0 0.1 2.6 2 1 1 3 3 3 0 Laminin Domain II Tail_P2_I PF09684.5 gi|452208406|ref|YP_007488528.1| - 0.083 12.4 3.0 2.2 7.8 0.0 2.9 1 1 0 2 2 2 0 Phage tail protein (Tail_P2_I) CppA_C PF14507.1 gi|452208406|ref|YP_007488528.1| - 0.085 13.0 0.0 0.17 12.1 0.0 1.5 1 0 0 1 1 1 0 CppA C-terminal CENP-F_leu_zip PF10473.4 gi|452208406|ref|YP_007488528.1| - 0.13 12.1 1.4 0.93 9.3 0.0 2.6 2 1 0 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Sec34 PF04136.10 gi|452208406|ref|YP_007488528.1| - 0.13 11.9 0.0 2.1 8.0 0.0 2.3 1 1 1 2 2 2 0 Sec34-like family TBPIP PF07106.8 gi|452208406|ref|YP_007488528.1| - 0.17 11.4 0.1 0.8 9.2 0.0 2.1 1 1 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Laminin_I PF06008.9 gi|452208406|ref|YP_007488528.1| - 0.29 10.4 3.9 8.9 5.5 0.1 3.1 3 1 1 4 4 4 0 Laminin Domain I IncA PF04156.9 gi|452208406|ref|YP_007488528.1| - 0.74 9.3 2.8 8.6 5.9 0.8 2.7 1 1 1 2 2 2 0 IncA protein PBP_like_2 PF12849.2 gi|452208407|ref|YP_007488529.1| - 2.4e-25 89.5 2.1 3.2e-25 89.1 1.5 1.1 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_11 PF13531.1 gi|452208407|ref|YP_007488529.1| - 2.3e-05 24.1 0.0 3.4e-05 23.6 0.0 1.4 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein PBP_like PF12727.2 gi|452208407|ref|YP_007488529.1| - 0.011 14.7 0.3 0.029 13.3 0.1 1.6 1 1 0 1 1 1 0 PBP superfamily domain BPD_transp_1 PF00528.17 gi|452208408|ref|YP_007488530.1| - 2e-13 50.2 8.7 2e-13 50.2 6.0 1.4 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.22 gi|452208409|ref|YP_007488531.1| - 4.5e-32 111.2 0.0 6.6e-32 110.6 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|452208409|ref|YP_007488531.1| - 2.2e-09 37.6 0.0 0.00032 20.7 0.0 2.1 1 1 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|452208409|ref|YP_007488531.1| - 2.4e-05 24.3 0.2 4.2e-05 23.6 0.1 1.3 1 1 0 1 1 1 1 AAA ATPase domain MobB PF03205.9 gi|452208409|ref|YP_007488531.1| - 6.8e-05 22.5 0.0 0.0063 16.2 0.0 2.2 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B SMC_N PF02463.14 gi|452208409|ref|YP_007488531.1| - 0.00019 20.7 0.0 0.00053 19.2 0.0 1.6 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_17 PF13207.1 gi|452208409|ref|YP_007488531.1| - 0.00039 21.2 0.0 0.00067 20.4 0.0 1.6 1 0 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|452208409|ref|YP_007488531.1| - 0.00054 19.1 0.0 0.0012 18.1 0.0 1.5 2 0 0 2 2 2 1 Protein of unknown function, DUF258 AAA_25 PF13481.1 gi|452208409|ref|YP_007488531.1| - 0.00062 19.2 0.1 0.0011 18.4 0.1 1.7 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|452208409|ref|YP_007488531.1| - 0.00077 19.1 0.3 0.037 13.7 0.0 2.7 3 0 0 3 3 3 1 Part of AAA domain AAA_22 PF13401.1 gi|452208409|ref|YP_007488531.1| - 0.00077 19.6 0.1 0.0013 18.9 0.0 1.6 1 1 0 1 1 1 1 AAA domain SbcCD_C PF13558.1 gi|452208409|ref|YP_007488531.1| - 0.0013 18.5 0.1 0.026 14.4 0.1 2.3 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_10 PF12846.2 gi|452208409|ref|YP_007488531.1| - 0.0023 17.4 0.1 0.26 10.6 0.0 2.2 2 0 0 2 2 2 1 AAA-like domain AAA_18 PF13238.1 gi|452208409|ref|YP_007488531.1| - 0.003 17.8 0.0 0.01 16.1 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|452208409|ref|YP_007488531.1| - 0.0038 16.7 0.1 0.0074 15.8 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA PF00004.24 gi|452208409|ref|YP_007488531.1| - 0.0091 16.2 0.0 0.016 15.3 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) NACHT PF05729.7 gi|452208409|ref|YP_007488531.1| - 0.018 14.7 0.0 0.031 13.9 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_28 PF13521.1 gi|452208409|ref|YP_007488531.1| - 0.019 14.9 0.1 0.066 13.1 0.1 1.7 1 1 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|452208409|ref|YP_007488531.1| - 0.023 14.6 0.0 0.079 12.8 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.1 gi|452208409|ref|YP_007488531.1| - 0.046 13.2 0.3 0.15 11.6 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.1 gi|452208409|ref|YP_007488531.1| - 0.061 12.9 0.0 0.092 12.3 0.0 1.2 1 0 0 1 1 1 0 AAA domain Rad17 PF03215.10 gi|452208409|ref|YP_007488531.1| - 0.084 11.5 0.0 0.11 11.1 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein NB-ARC PF00931.17 gi|452208409|ref|YP_007488531.1| - 0.095 11.5 0.1 0.15 10.9 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain Arch_ATPase PF01637.13 gi|452208409|ref|YP_007488531.1| - 0.11 12.2 0.0 0.17 11.5 0.0 1.2 1 0 0 1 1 1 0 Archaeal ATPase AAA_33 PF13671.1 gi|452208409|ref|YP_007488531.1| - 0.11 12.4 0.0 0.2 11.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain ArgK PF03308.11 gi|452208409|ref|YP_007488531.1| - 0.12 11.1 0.4 0.37 9.5 0.0 1.8 2 0 0 2 2 2 0 ArgK protein AAA_5 PF07728.9 gi|452208409|ref|YP_007488531.1| - 0.14 11.8 0.0 0.3 10.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_23 PF13476.1 gi|452208409|ref|YP_007488531.1| - 0.15 12.3 0.0 0.25 11.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain TOBE PF03459.12 gi|452208410|ref|YP_007488532.1| - 8.2e-14 51.4 3.3 2.1e-13 50.1 1.0 2.6 2 0 0 2 2 2 1 TOBE domain HTH_1 PF00126.22 gi|452208410|ref|YP_007488532.1| - 4.1e-06 26.4 1.0 8.9e-06 25.3 0.5 1.8 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix protein, lysR family TOBE_2 PF08402.5 gi|452208410|ref|YP_007488532.1| - 0.022 14.7 0.8 0.23 11.4 0.3 2.4 1 1 1 2 2 2 0 TOBE domain HTH_28 PF13518.1 gi|452208410|ref|YP_007488532.1| - 0.064 13.2 1.0 0.12 12.3 0.7 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HATPase_c PF02518.21 gi|452208411|ref|YP_007488533.1| - 4.4e-15 55.3 0.0 9.2e-15 54.3 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.1 gi|452208411|ref|YP_007488533.1| - 2.8e-11 43.7 0.0 6.1e-11 42.6 0.0 1.6 1 0 0 1 1 1 1 PAS domain PAS_3 PF08447.6 gi|452208411|ref|YP_007488533.1| - 2.2e-05 24.4 0.0 4.7e-05 23.3 0.0 1.6 1 0 0 1 1 1 1 PAS fold PAS PF00989.19 gi|452208411|ref|YP_007488533.1| - 5e-05 23.0 0.0 0.00012 21.8 0.0 1.6 1 0 0 1 1 1 1 PAS fold HATPase_c_2 PF13581.1 gi|452208411|ref|YP_007488533.1| - 0.00011 21.9 1.2 0.001 18.8 0.9 2.3 1 1 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_4 PF08448.5 gi|452208411|ref|YP_007488533.1| - 0.015 15.2 0.2 0.015 15.2 0.1 2.0 2 0 0 2 2 2 0 PAS fold HisKA PF00512.20 gi|452208411|ref|YP_007488533.1| - 0.022 14.7 0.6 0.045 13.7 0.1 1.8 2 0 0 2 2 2 0 His Kinase A (phospho-acceptor) domain DUF3313 PF11769.3 gi|452208411|ref|YP_007488533.1| - 0.046 13.0 0.4 0.13 11.5 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3313) HATPase_c_5 PF14501.1 gi|452208411|ref|YP_007488533.1| - 0.095 12.4 0.0 0.18 11.5 0.0 1.4 1 0 0 1 1 1 0 GHKL domain PP_kinase_C PF13090.1 gi|452208412|ref|YP_007488534.1| - 1.7e-147 490.6 0.0 2.3e-147 490.2 0.0 1.2 1 0 0 1 1 1 1 Polyphosphate kinase C-terminal domain PP_kinase PF02503.12 gi|452208412|ref|YP_007488534.1| - 5.8e-59 199.0 1.9 7.4e-59 198.7 0.4 1.7 2 0 0 2 2 2 1 Polyphosphate kinase middle domain PP_kinase_N PF13089.1 gi|452208412|ref|YP_007488534.1| - 1.3e-35 121.7 0.0 3.2e-35 120.5 0.0 1.7 1 0 0 1 1 1 1 Polyphosphate kinase N-terminal domain PLDc_2 PF13091.1 gi|452208412|ref|YP_007488534.1| - 1.1e-08 34.8 0.0 2.7e-05 23.9 0.0 2.5 2 0 0 2 2 2 2 PLD-like domain Hydrolase_4 PF12146.3 gi|452208412|ref|YP_007488534.1| - 0.043 13.6 0.2 0.14 12.0 0.0 2.0 2 0 0 2 2 2 0 Putative lysophospholipase Metallophos PF00149.23 gi|452208413|ref|YP_007488535.1| - 3.4e-11 42.9 0.2 1.1e-10 41.2 0.1 1.7 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.2 gi|452208413|ref|YP_007488535.1| - 4.9e-09 36.2 0.0 6.5e-09 35.8 0.0 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos_3 PF14582.1 gi|452208413|ref|YP_007488535.1| - 0.048 12.8 0.0 0.062 12.4 0.0 1.2 1 0 0 1 1 1 0 Metallophosphoesterase, calcineurin superfamily Syntaxin-6_N PF09177.6 gi|452208414|ref|YP_007488536.1| - 0.03 14.7 0.1 0.065 13.6 0.0 1.6 1 0 0 1 1 1 0 Syntaxin 6, N-terminal Hemerythrin PF01814.18 gi|452208414|ref|YP_007488536.1| - 0.55 10.3 6.2 0.49 10.5 2.1 2.5 2 2 0 2 2 2 0 Hemerythrin HHE cation binding domain HTH_10 PF04967.7 gi|452208415|ref|YP_007488537.1| - 5.2e-18 64.3 0.1 8.3e-18 63.7 0.1 1.3 1 0 0 1 1 1 1 HTH DNA binding domain MarR_2 PF12802.2 gi|452208415|ref|YP_007488537.1| - 0.0012 18.4 0.5 0.0012 18.4 0.4 2.5 3 1 0 3 3 3 1 MarR family Sigma70_r4 PF04545.11 gi|452208415|ref|YP_007488537.1| - 0.0024 17.1 0.0 0.0049 16.1 0.0 1.6 1 1 0 1 1 1 1 Sigma-70, region 4 HTH_11 PF08279.7 gi|452208415|ref|YP_007488537.1| - 0.0026 17.3 0.1 0.0052 16.4 0.0 1.4 1 0 0 1 1 1 1 HTH domain HTH_1 PF00126.22 gi|452208415|ref|YP_007488537.1| - 0.0041 16.8 0.2 0.0095 15.6 0.1 1.6 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_5 PF01022.15 gi|452208415|ref|YP_007488537.1| - 0.016 14.8 0.4 0.041 13.5 0.0 1.8 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family HTH_AsnC-type PF13404.1 gi|452208415|ref|YP_007488537.1| - 0.017 14.6 0.2 0.055 13.0 0.1 1.9 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_3 PF01381.17 gi|452208415|ref|YP_007488537.1| - 0.037 13.8 0.1 0.073 12.9 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix HTH_30 PF13556.1 gi|452208415|ref|YP_007488537.1| - 0.051 13.1 0.9 0.088 12.4 0.0 1.8 2 0 0 2 2 2 0 PucR C-terminal helix-turn-helix domain HTH_24 PF13412.1 gi|452208415|ref|YP_007488537.1| - 0.1 12.0 0.0 0.18 11.2 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|452208416|ref|YP_007488538.1| - 4.6e-07 29.5 0.2 6.7e-07 29.0 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|452208416|ref|YP_007488538.1| - 1.8e-06 27.4 0.1 2.6e-06 27.0 0.1 1.3 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|452208416|ref|YP_007488538.1| - 2.2e-06 27.1 0.2 4.8e-06 26.0 0.0 1.6 2 0 0 2 2 2 1 IclR helix-turn-helix domain TetR_N PF00440.18 gi|452208416|ref|YP_007488538.1| - 0.0032 17.0 0.0 0.0051 16.4 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TrmB PF01978.14 gi|452208416|ref|YP_007488538.1| - 0.0039 16.8 0.0 0.018 14.7 0.0 1.9 1 1 1 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_7 PF02796.10 gi|452208416|ref|YP_007488538.1| - 0.011 15.5 0.0 0.018 14.9 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_24 PF13412.1 gi|452208416|ref|YP_007488538.1| - 0.046 13.1 0.0 0.074 12.4 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_38 PF13936.1 gi|452208416|ref|YP_007488538.1| - 0.047 13.2 0.1 0.22 11.1 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_AsnC-type PF13404.1 gi|452208416|ref|YP_007488538.1| - 0.076 12.5 1.8 0.23 11.0 1.2 1.9 1 1 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_27 PF13463.1 gi|452208416|ref|YP_007488538.1| - 0.11 12.8 0.0 0.18 12.1 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_11 PF08279.7 gi|452208416|ref|YP_007488538.1| - 0.12 12.0 0.0 0.19 11.3 0.0 1.3 1 0 0 1 1 1 0 HTH domain Zip PF02535.17 gi|452208417|ref|YP_007488539.1| - 8e-19 67.7 6.9 8e-19 67.7 4.8 2.5 2 1 0 2 2 2 2 ZIP Zinc transporter IclR PF01614.13 gi|452208418|ref|YP_007488540.1| - 6e-28 97.1 0.4 8.9e-28 96.5 0.3 1.3 1 0 0 1 1 1 1 Bacterial transcriptional regulator HTH_IclR PF09339.5 gi|452208418|ref|YP_007488540.1| - 2.3e-08 33.5 0.4 1.4e-07 30.9 0.1 2.3 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_5 PF01022.15 gi|452208418|ref|YP_007488540.1| - 7.3e-07 28.7 0.1 1.9e-06 27.4 0.1 1.8 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|452208418|ref|YP_007488540.1| - 3.3e-06 26.8 0.4 9.5e-06 25.3 0.0 2.0 2 0 0 2 2 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|452208418|ref|YP_007488540.1| - 7.1e-06 25.6 0.0 1.9e-05 24.2 0.0 1.8 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|452208418|ref|YP_007488540.1| - 6.3e-05 22.6 0.0 0.00013 21.5 0.0 1.5 1 0 0 1 1 1 1 MarR family Fe_dep_repress PF01325.14 gi|452208418|ref|YP_007488540.1| - 0.00022 21.0 0.1 0.00058 19.7 0.0 1.7 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_11 PF08279.7 gi|452208418|ref|YP_007488540.1| - 0.00032 20.2 0.0 0.00087 18.8 0.0 1.7 1 0 0 1 1 1 1 HTH domain HTH_DeoR PF08220.7 gi|452208418|ref|YP_007488540.1| - 0.0016 17.9 0.0 0.0051 16.3 0.0 1.8 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain MarR_2 PF12802.2 gi|452208418|ref|YP_007488540.1| - 0.0016 18.0 0.0 0.0036 16.9 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|452208418|ref|YP_007488540.1| - 0.0033 16.7 0.0 0.006 15.9 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_10 PF04967.7 gi|452208418|ref|YP_007488540.1| - 0.016 14.8 0.0 0.044 13.3 0.0 1.7 1 0 0 1 1 1 0 HTH DNA binding domain HTH_Crp_2 PF13545.1 gi|452208418|ref|YP_007488540.1| - 0.018 14.8 0.0 0.043 13.6 0.0 1.7 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_45 PF14947.1 gi|452208418|ref|YP_007488540.1| - 0.025 14.3 0.0 0.12 12.1 0.0 2.1 2 0 0 2 2 2 0 Winged helix-turn-helix DUF4423 PF14394.1 gi|452208418|ref|YP_007488540.1| - 0.028 13.9 0.0 0.084 12.4 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4423) FUR PF01475.14 gi|452208418|ref|YP_007488540.1| - 0.043 13.7 0.1 0.11 12.4 0.0 1.6 1 0 0 1 1 1 0 Ferric uptake regulator family PadR PF03551.9 gi|452208418|ref|YP_007488540.1| - 0.051 13.3 0.0 0.13 12.0 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family HTH_22 PF13309.1 gi|452208418|ref|YP_007488540.1| - 0.051 13.3 0.1 0.15 11.8 0.0 1.8 2 0 0 2 2 2 0 HTH domain HTH_17 PF12728.2 gi|452208418|ref|YP_007488540.1| - 0.054 13.7 0.0 0.26 11.5 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain GntR PF00392.16 gi|452208418|ref|YP_007488540.1| - 0.06 12.7 0.0 0.15 11.5 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family Rrf2 PF02082.15 gi|452208418|ref|YP_007488540.1| - 0.1 12.7 0.0 0.24 11.5 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator HTH_7 PF02796.10 gi|452208418|ref|YP_007488540.1| - 0.1 12.4 0.0 0.22 11.4 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase Phage_CI_repr PF07022.8 gi|452208418|ref|YP_007488540.1| - 0.13 12.3 0.0 0.15 12.1 0.0 1.4 1 1 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain tRNA-synt_1 PF00133.17 gi|452208419|ref|YP_007488541.1| - 2.2e-129 432.2 0.2 1.5e-128 429.4 0.1 1.9 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.8 gi|452208419|ref|YP_007488541.1| - 1.1e-36 125.9 0.0 1.8e-36 125.2 0.0 1.4 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.6 gi|452208419|ref|YP_007488541.1| - 5.6e-26 91.1 0.4 1.1e-14 53.8 0.0 3.4 3 0 0 3 3 3 2 tRNA synthetases class I (M) tRNA-synt_1_2 PF13603.1 gi|452208419|ref|YP_007488541.1| - 1.9e-05 24.0 0.0 9.7e-05 21.7 0.0 1.9 1 1 1 2 2 2 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1e PF01406.14 gi|452208419|ref|YP_007488541.1| - 0.0096 15.0 0.0 0.026 13.6 0.0 1.6 2 0 0 2 2 2 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1b PF00579.20 gi|452208419|ref|YP_007488541.1| - 0.098 11.7 0.0 0.87 8.6 0.0 2.0 2 0 0 2 2 2 0 tRNA synthetases class I (W and Y) tRNA-synt_1c PF00749.16 gi|452208419|ref|YP_007488541.1| - 0.16 10.5 0.4 1.5 7.3 0.1 2.4 3 0 0 3 3 3 0 tRNA synthetases class I (E and Q), catalytic domain Lipase_2 PF01674.13 gi|452208420|ref|YP_007488542.1| - 8.1e-17 61.2 0.1 3.7e-15 55.8 0.0 2.1 1 1 0 1 1 1 1 Lipase (class 2) Abhydrolase_6 PF12697.2 gi|452208420|ref|YP_007488542.1| - 2.6e-05 24.2 1.7 5.5e-05 23.1 0.9 1.5 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|452208420|ref|YP_007488542.1| - 7e-05 22.6 1.1 0.00016 21.4 0.8 1.4 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|452208420|ref|YP_007488542.1| - 0.0007 19.2 0.1 0.00094 18.7 0.0 1.3 1 0 0 1 1 1 1 alpha/beta hydrolase fold PGAP1 PF07819.8 gi|452208420|ref|YP_007488542.1| - 0.0097 15.5 0.0 0.46 10.0 0.0 2.2 1 1 0 1 1 1 1 PGAP1-like protein DUF915 PF06028.6 gi|452208420|ref|YP_007488542.1| - 0.013 14.5 0.0 0.043 12.8 0.0 1.7 2 0 0 2 2 2 0 Alpha/beta hydrolase of unknown function (DUF915) LCAT PF02450.10 gi|452208420|ref|YP_007488542.1| - 0.034 13.1 0.0 0.048 12.6 0.0 1.1 1 0 0 1 1 1 0 Lecithin:cholesterol acyltransferase DUF676 PF05057.9 gi|452208420|ref|YP_007488542.1| - 0.094 11.9 0.0 0.17 11.1 0.0 1.4 1 0 0 1 1 1 0 Putative serine esterase (DUF676) Aldo_ket_red PF00248.16 gi|452208422|ref|YP_007488544.1| - 1.5e-56 191.3 0.0 1.8e-56 191.0 0.0 1.1 1 0 0 1 1 1 1 Aldo/keto reductase family MatE PF01554.13 gi|452208423|ref|YP_007488545.1| - 1.9e-58 196.6 37.1 1.3e-37 128.9 7.8 2.6 3 0 0 3 3 3 2 MatE Polysacc_synt_C PF14667.1 gi|452208423|ref|YP_007488545.1| - 1.2e-09 38.0 12.2 1.2e-09 38.0 8.5 4.4 4 2 0 4 4 4 1 Polysaccharide biosynthesis C-terminal domain Cyd_oper_YbgE PF09600.5 gi|452208423|ref|YP_007488545.1| - 0.02 15.0 7.7 0.12 12.5 0.3 3.5 3 0 0 3 3 3 0 Cyd operon protein YbgE (Cyd_oper_YbgE) MttA_Hcf106 PF02416.11 gi|452208423|ref|YP_007488545.1| - 2.5 7.2 5.2 13 4.9 0.6 3.0 2 0 0 2 2 2 0 mttA/Hcf106 family NT5C PF06941.7 gi|452208424|ref|YP_007488546.1| - 1.2e-09 37.9 0.0 1.6e-09 37.5 0.0 1.1 1 0 0 1 1 1 1 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) Lactamase_B PF00753.22 gi|452208425|ref|YP_007488547.1| - 9e-19 67.8 5.3 1.6e-18 67.1 3.6 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Beta-Casp PF10996.3 gi|452208425|ref|YP_007488547.1| - 3.3e-17 62.6 0.0 5.5e-17 61.8 0.0 1.3 1 0 0 1 1 1 1 Beta-Casp domain Lactamase_B_2 PF12706.2 gi|452208425|ref|YP_007488547.1| - 1.6e-11 44.1 0.2 3.6e-11 42.9 0.1 1.5 2 0 0 2 2 2 1 Beta-lactamase superfamily domain RMMBL PF07521.7 gi|452208425|ref|YP_007488547.1| - 7.5e-09 35.2 0.0 1.5e-08 34.2 0.0 1.6 1 0 0 1 1 1 1 RNA-metabolising metallo-beta-lactamase Lactamase_B_3 PF13483.1 gi|452208425|ref|YP_007488547.1| - 0.016 14.9 0.2 0.049 13.3 0.1 1.9 1 1 0 1 1 1 0 Beta-lactamase superfamily domain Tom22 PF04281.8 gi|452208426|ref|YP_007488548.1| - 0.019 14.4 6.6 0.023 14.2 4.6 1.1 1 0 0 1 1 1 0 Mitochondrial import receptor subunit Tom22 Usp PF00582.21 gi|452208427|ref|YP_007488549.1| - 1.1e-35 122.9 0.3 1.2e-35 122.7 0.2 1.0 1 0 0 1 1 1 1 Universal stress protein family MAAL_C PF07476.6 gi|452208427|ref|YP_007488549.1| - 0.07 12.0 0.0 0.089 11.7 0.0 1.1 1 0 0 1 1 1 0 Methylaspartate ammonia-lyase C-terminus GTP-bdg_N PF13167.1 gi|452208427|ref|YP_007488549.1| - 0.14 12.3 0.0 0.19 11.8 0.0 1.2 1 0 0 1 1 1 0 GTP-binding GTPase N-terminal Pox_P21 PF05313.7 gi|452208429|ref|YP_007488551.1| - 0.19 10.9 1.8 0.82 8.9 0.1 2.2 2 0 0 2 2 2 0 Poxvirus P21 membrane protein DUF2304 PF10066.4 gi|452208429|ref|YP_007488551.1| - 0.32 10.8 2.4 0.23 11.2 0.1 1.9 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2304) Trypsin_2 PF13365.1 gi|452208430|ref|YP_007488552.1| - 2.2e-13 50.2 0.9 3.8e-13 49.4 0.6 1.4 1 0 0 1 1 1 1 Trypsin-like peptidase domain PDZ_2 PF13180.1 gi|452208430|ref|YP_007488552.1| - 1.9e-09 37.2 0.1 4.1e-09 36.2 0.1 1.6 1 0 0 1 1 1 1 PDZ domain Trypsin PF00089.21 gi|452208430|ref|YP_007488552.1| - 3.8e-09 36.4 0.3 1.6e-08 34.3 0.2 1.8 1 1 0 1 1 1 1 Trypsin Peptidase_S32 PF05579.8 gi|452208430|ref|YP_007488552.1| - 0.073 12.0 4.7 0.18 10.7 0.2 2.2 2 0 0 2 2 2 0 Equine arteritis virus serine endopeptidase S32 Myco_19_kDa PF05481.7 gi|452208430|ref|YP_007488552.1| - 0.63 9.8 8.1 1.4 8.7 0.1 3.2 3 0 0 3 3 3 0 Mycobacterium 19 kDa lipoprotein antigen Peptidase_S46 PF10459.4 gi|452208430|ref|YP_007488552.1| - 1.3 7.4 2.6 9.4 4.5 0.0 2.0 2 0 0 2 2 2 0 Peptidase S46 MLTD_N PF06474.7 gi|452208430|ref|YP_007488552.1| - 2.1 8.5 4.0 0.98 9.6 0.9 1.9 2 0 0 2 2 2 0 MltD lipid attachment motif Anti-adapt_IraP PF10796.4 gi|452208431|ref|YP_007488553.1| - 0.05 13.9 0.5 0.93 9.9 0.1 2.2 2 0 0 2 2 2 0 Sigma-S stabilisation anti-adaptor protein BLOC1_2 PF10046.4 gi|452208431|ref|YP_007488553.1| - 0.079 13.1 0.1 0.13 12.3 0.0 1.3 1 0 0 1 1 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Cep57_CLD_2 PF14197.1 gi|452208431|ref|YP_007488553.1| - 0.48 10.4 2.8 10 6.1 0.3 2.8 2 1 1 3 3 3 0 Centrosome localisation domain of PPC89 DUF372 PF04036.7 gi|452208432|ref|YP_007488554.1| - 7.9e-22 76.4 0.3 1.3e-21 75.7 0.2 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF372) DUF381 PF04038.7 gi|452208432|ref|YP_007488554.1| - 2e-16 59.7 0.1 2.6e-16 59.3 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF381) GPW_gp25 PF04965.9 gi|452208432|ref|YP_007488554.1| - 0.06 12.8 0.0 0.097 12.2 0.0 1.5 1 1 0 1 1 1 0 Gene 25-like lysozyme HalX PF08663.5 gi|452208432|ref|YP_007488554.1| - 0.15 12.0 2.3 0.34 10.9 1.6 1.7 1 1 0 1 1 1 0 HalX domain Aconitase PF00330.15 gi|452208433|ref|YP_007488555.1| - 2.2e-99 333.0 0.4 1.2e-68 231.7 0.0 2.1 1 1 1 2 2 2 2 Aconitase family (aconitate hydratase) Aconitase_C PF00694.14 gi|452208433|ref|YP_007488555.1| - 5.6e-20 71.7 0.0 1.1e-19 70.8 0.0 1.4 1 0 0 1 1 1 1 Aconitase C-terminal domain eIF-5_eIF-2B PF01873.12 gi|452208434|ref|YP_007488556.1| - 1.8e-26 92.2 0.0 2.3e-26 91.8 0.0 1.1 1 0 0 1 1 1 1 Domain found in IF2B/IF5 TRAM PF01938.15 gi|452208434|ref|YP_007488556.1| - 2.3e-08 33.6 0.7 3.2e-08 33.2 0.1 1.5 2 0 0 2 2 2 1 TRAM domain DNA_RNApol_7kD PF03604.8 gi|452208434|ref|YP_007488556.1| - 0.018 14.4 0.4 1 8.8 0.0 2.2 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit Lar_restr_allev PF14354.1 gi|452208434|ref|YP_007488556.1| - 0.18 12.1 2.1 3.1 8.1 1.4 2.3 1 1 0 1 1 1 0 Restriction alleviation protein Lar TF_Zn_Ribbon PF08271.7 gi|452208434|ref|YP_007488556.1| - 0.21 10.9 3.8 1.5 8.1 0.7 2.4 1 1 1 2 2 2 0 TFIIB zinc-binding zf-CCHC_6 PF15288.1 gi|452208434|ref|YP_007488556.1| - 0.28 10.9 1.2 1.9 8.2 0.1 2.3 2 0 0 2 2 2 0 Zinc knuckle His_biosynth PF00977.16 gi|452208435|ref|YP_007488557.1| - 1.7e-71 240.1 6.2 1.9e-71 239.9 4.3 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein DHO_dh PF01180.16 gi|452208435|ref|YP_007488557.1| - 7.1e-10 38.3 1.8 1e-05 24.7 0.0 2.1 2 0 0 2 2 2 2 Dihydroorotate dehydrogenase Dus PF01207.12 gi|452208435|ref|YP_007488557.1| - 1e-08 34.4 0.1 0.0013 17.6 0.0 2.2 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) ThiG PF05690.9 gi|452208435|ref|YP_007488557.1| - 2e-08 33.6 3.8 0.00034 19.7 0.3 2.1 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG NMO PF03060.10 gi|452208435|ref|YP_007488557.1| - 4.4e-07 29.3 5.7 3.1e-06 26.5 0.2 2.1 2 0 0 2 2 2 2 Nitronate monooxygenase PcrB PF01884.12 gi|452208435|ref|YP_007488557.1| - 1e-06 28.1 9.3 0.004 16.4 1.4 3.1 2 2 1 3 3 3 2 PcrB family IGPS PF00218.16 gi|452208435|ref|YP_007488557.1| - 4.6e-06 25.8 1.4 0.0014 17.7 0.1 3.4 2 2 2 4 4 4 1 Indole-3-glycerol phosphate synthase FMN_dh PF01070.13 gi|452208435|ref|YP_007488557.1| - 8.7e-05 21.5 11.2 0.0092 14.8 3.2 2.1 2 0 0 2 2 2 2 FMN-dependent dehydrogenase Trp_syntA PF00290.15 gi|452208435|ref|YP_007488557.1| - 0.00031 19.3 2.3 0.18 10.2 0.1 2.1 2 0 0 2 2 2 2 Tryptophan synthase alpha chain NanE PF04131.9 gi|452208435|ref|YP_007488557.1| - 0.0004 19.4 1.1 0.057 12.3 0.1 2.3 2 0 0 2 2 2 2 Putative N-acetylmannosamine-6-phosphate epimerase TMP-TENI PF02581.12 gi|452208435|ref|YP_007488557.1| - 0.0021 17.1 1.1 0.023 13.8 0.1 2.1 2 0 0 2 2 2 1 Thiamine monophosphate synthase/TENI IMPDH PF00478.20 gi|452208435|ref|YP_007488557.1| - 0.0023 16.8 3.0 0.14 11.0 0.1 2.1 2 0 0 2 2 2 2 IMP dehydrogenase / GMP reductase domain G3P_antiterm PF04309.7 gi|452208435|ref|YP_007488557.1| - 0.048 12.6 2.4 0.32 10.0 0.2 2.1 2 0 0 2 2 2 0 Glycerol-3-phosphate responsive antiterminator Ribul_P_3_epim PF00834.14 gi|452208435|ref|YP_007488557.1| - 0.074 12.1 4.6 2 7.5 0.1 2.4 2 1 0 2 2 2 0 Ribulose-phosphate 3 epimerase family Fer2 PF00111.22 gi|452208436|ref|YP_007488558.1| - 1.3e-14 53.6 0.5 2.1e-14 53.0 0.4 1.2 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_4 PF13510.1 gi|452208436|ref|YP_007488558.1| - 0.08 12.7 0.1 0.15 11.9 0.1 1.5 1 1 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain DUF2070 PF09843.4 gi|452208437|ref|YP_007488559.1| - 2.3e-53 180.3 0.9 4.3e-53 179.4 0.3 1.6 2 0 0 2 2 2 1 Predicted membrane protein (DUF2070) DUF3194 PF11419.3 gi|452208438|ref|YP_007488560.1| - 1.5e-06 28.2 1.8 2.1e-06 27.8 1.2 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF3194) Peptidase_M17_N PF02789.12 gi|452208438|ref|YP_007488560.1| - 0.045 13.5 0.2 0.87 9.3 0.0 2.0 2 0 0 2 2 2 0 Cytosol aminopeptidase family, N-terminal domain Prefoldin_2 PF01920.15 gi|452208439|ref|YP_007488561.1| - 2.3e-23 81.9 20.4 2.6e-23 81.7 14.1 1.0 1 0 0 1 1 1 1 Prefoldin subunit Prefoldin PF02996.12 gi|452208439|ref|YP_007488561.1| - 0.0018 17.9 17.1 0.08 12.5 11.8 2.5 1 1 0 1 1 1 1 Prefoldin subunit BLOC1_2 PF10046.4 gi|452208439|ref|YP_007488561.1| - 0.0036 17.4 12.0 0.027 14.6 1.0 2.1 1 1 1 2 2 2 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 ALIX_LYPXL_bnd PF13949.1 gi|452208439|ref|YP_007488561.1| - 0.0046 15.9 8.4 0.0055 15.7 5.8 1.1 1 0 0 1 1 1 1 ALIX V-shaped domain binding to HIV bZIP_1 PF00170.16 gi|452208439|ref|YP_007488561.1| - 0.017 15.0 1.6 0.017 15.0 1.1 2.4 2 0 0 2 2 2 0 bZIP transcription factor DUF2383 PF09537.5 gi|452208439|ref|YP_007488561.1| - 0.037 14.2 5.4 2.1 8.5 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF2383) DUF465 PF04325.8 gi|452208439|ref|YP_007488561.1| - 0.039 13.6 2.1 0.039 13.6 1.4 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF465) ING PF12998.2 gi|452208439|ref|YP_007488561.1| - 0.045 14.0 9.8 0.047 13.9 5.8 1.8 1 1 1 2 2 2 0 Inhibitor of growth proteins N-terminal histone-binding Laminin_I PF06008.9 gi|452208439|ref|YP_007488561.1| - 0.07 12.4 14.5 0.2 10.9 1.6 2.0 1 1 1 2 2 2 0 Laminin Domain I Laminin_II PF06009.7 gi|452208439|ref|YP_007488561.1| - 0.075 12.7 7.8 0.1 12.3 5.4 1.3 1 0 0 1 1 1 0 Laminin Domain II EzrA PF06160.7 gi|452208439|ref|YP_007488561.1| - 0.078 11.1 15.5 0.11 10.6 10.8 1.2 1 0 0 1 1 1 0 Septation ring formation regulator, EzrA NPV_P10 PF05531.7 gi|452208439|ref|YP_007488561.1| - 0.08 13.2 1.0 0.08 13.2 0.7 2.2 2 0 0 2 2 2 0 Nucleopolyhedrovirus P10 protein DUF3584 PF12128.3 gi|452208439|ref|YP_007488561.1| - 0.093 10.0 12.5 0.12 9.7 8.7 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) CobN-Mg_chel PF02514.11 gi|452208439|ref|YP_007488561.1| - 0.11 9.9 1.4 0.12 9.7 1.0 1.0 1 0 0 1 1 1 0 CobN/Magnesium Chelatase eIF3_subunit PF08597.5 gi|452208439|ref|YP_007488561.1| - 0.13 11.8 5.9 0.16 11.5 4.1 1.1 1 0 0 1 1 1 0 Translation initiation factor eIF3 subunit Seryl_tRNA_N PF02403.17 gi|452208439|ref|YP_007488561.1| - 0.14 12.1 10.9 1.3 9.0 0.5 2.2 2 0 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain Med4 PF10018.4 gi|452208439|ref|YP_007488561.1| - 0.15 11.4 8.6 1.6 8.1 0.5 2.1 2 0 0 2 2 2 0 Vitamin-D-receptor interacting Mediator subunit 4 DUF4404 PF14357.1 gi|452208439|ref|YP_007488561.1| - 0.17 12.3 8.6 0.21 11.9 0.2 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4404) WXG100 PF06013.7 gi|452208439|ref|YP_007488561.1| - 0.18 11.8 8.3 1.2 9.2 1.3 2.6 2 1 0 2 2 2 0 Proteins of 100 residues with WXG UXS1_N PF11803.3 gi|452208439|ref|YP_007488561.1| - 0.18 11.5 3.6 0.3 10.8 0.1 2.4 1 1 2 3 3 3 0 UDP-glucuronate decarboxylase N-terminal Rac1 PF09632.5 gi|452208439|ref|YP_007488561.1| - 0.35 9.9 4.1 0.44 9.5 2.8 1.1 1 0 0 1 1 1 0 Rac1-binding domain TraF_2 PF13729.1 gi|452208439|ref|YP_007488561.1| - 0.39 9.4 6.3 3.2 6.4 0.6 2.0 1 1 1 2 2 2 0 F plasmid transfer operon, TraF, protein FlgN PF05130.7 gi|452208439|ref|YP_007488561.1| - 0.41 10.9 13.1 0.55 10.4 9.1 1.1 1 0 0 1 1 1 0 FlgN protein DUF2379 PF09543.5 gi|452208439|ref|YP_007488561.1| - 0.43 10.5 4.7 0.43 10.5 0.8 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF2379) Sigma70_ner PF04546.8 gi|452208439|ref|YP_007488561.1| - 0.49 9.9 13.2 0.16 11.5 1.7 2.0 1 1 1 2 2 2 0 Sigma-70, non-essential region DUF4559 PF15112.1 gi|452208439|ref|YP_007488561.1| - 0.54 9.3 9.1 0.74 8.9 6.3 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4559) RasGAP_C PF03836.10 gi|452208439|ref|YP_007488561.1| - 0.56 9.8 6.6 2.1 8.0 0.6 2.1 2 0 0 2 2 2 0 RasGAP C-terminus ADIP PF11559.3 gi|452208439|ref|YP_007488561.1| - 0.59 10.0 9.9 1.2 9.0 0.4 2.1 2 0 0 2 2 2 0 Afadin- and alpha -actinin-Binding DUF4446 PF14584.1 gi|452208439|ref|YP_007488561.1| - 0.62 9.8 6.3 1.7 8.4 0.3 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF4446) FlaC_arch PF05377.6 gi|452208439|ref|YP_007488561.1| - 0.86 9.5 9.4 0.092 12.6 1.9 2.3 2 1 0 2 2 2 0 Flagella accessory protein C (FlaC) Baculo_PEP_C PF04513.7 gi|452208439|ref|YP_007488561.1| - 0.86 9.4 7.6 3 7.6 5.3 1.7 1 1 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus Sipho_Gp157 PF05565.6 gi|452208439|ref|YP_007488561.1| - 0.89 9.1 9.1 5 6.6 6.3 1.9 1 1 0 1 1 1 0 Siphovirus Gp157 AAA_27 PF13514.1 gi|452208439|ref|YP_007488561.1| - 1.1 6.9 12.0 1.5 6.4 8.3 1.2 1 0 0 1 1 1 0 AAA domain DUF1978 PF09321.5 gi|452208439|ref|YP_007488561.1| - 1.1 8.6 14.8 1.8 7.9 10.3 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1978) Cluap1 PF10234.4 gi|452208439|ref|YP_007488561.1| - 1.2 8.2 9.3 1.5 7.9 6.5 1.0 1 0 0 1 1 1 0 Clusterin-associated protein-1 TPR_MLP1_2 PF07926.7 gi|452208439|ref|YP_007488561.1| - 1.3 8.7 17.9 0.39 10.4 1.0 2.1 1 1 1 2 2 2 0 TPR/MLP1/MLP2-like protein DUF4164 PF13747.1 gi|452208439|ref|YP_007488561.1| - 1.3 9.2 12.9 0.41 10.7 1.4 2.4 2 1 0 2 2 2 0 Domain of unknown function (DUF4164) Med10 PF09748.4 gi|452208439|ref|YP_007488561.1| - 1.4 8.7 4.7 36 4.1 3.3 2.0 1 1 0 1 1 1 0 Transcription factor subunit Med10 of Mediator complex Lebercilin PF15619.1 gi|452208439|ref|YP_007488561.1| - 1.7 7.9 14.4 3.2 7.1 10.0 1.4 1 1 0 1 1 1 0 Ciliary protein causing Leber congenital amaurosis disease COG2 PF06148.6 gi|452208439|ref|YP_007488561.1| - 1.8 8.4 10.8 0.37 10.6 1.3 2.0 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 Fib_alpha PF08702.5 gi|452208439|ref|YP_007488561.1| - 2.2 8.3 10.3 0.85 9.7 0.8 2.1 1 1 0 2 2 2 0 Fibrinogen alpha/beta chain family AAA_13 PF13166.1 gi|452208439|ref|YP_007488561.1| - 2.2 6.6 11.8 6.5 5.0 8.2 1.5 1 1 0 1 1 1 0 AAA domain Mnd1 PF03962.10 gi|452208439|ref|YP_007488561.1| - 2.3 7.8 15.4 2.3 7.8 0.7 2.0 1 1 1 2 2 2 0 Mnd1 family LXG PF04740.7 gi|452208439|ref|YP_007488561.1| - 2.7 7.7 13.0 3 7.5 1.9 2.1 1 1 1 2 2 2 0 LXG domain of WXG superfamily DUF2968 PF11180.3 gi|452208439|ref|YP_007488561.1| - 2.8 7.2 13.8 3.4 6.9 0.5 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2968) PilJ PF13675.1 gi|452208439|ref|YP_007488561.1| - 3.1 8.1 9.4 17 5.7 6.0 2.0 1 1 0 1 1 1 0 Type IV pili methyl-accepting chemotaxis transducer N-term DUF4407 PF14362.1 gi|452208439|ref|YP_007488561.1| - 3.2 6.6 12.0 28 3.5 8.3 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) GAS PF13851.1 gi|452208439|ref|YP_007488561.1| - 3.3 6.8 18.4 39 3.3 12.9 1.9 1 1 0 1 1 1 0 Growth-arrest specific micro-tubule binding FadA PF09403.5 gi|452208439|ref|YP_007488561.1| - 3.5 7.6 13.3 1.4 8.8 7.0 1.8 1 1 1 2 2 2 0 Adhesion protein FadA Bap31 PF05529.7 gi|452208439|ref|YP_007488561.1| - 3.6 6.9 9.5 4.7 6.6 6.6 1.2 1 0 0 1 1 1 0 B-cell receptor-associated protein 31-like Lectin_N PF03954.9 gi|452208439|ref|YP_007488561.1| - 3.9 6.8 5.6 7.6 5.9 3.9 1.5 1 1 0 1 1 1 0 Hepatic lectin, N-terminal domain Cortex-I_coil PF09304.5 gi|452208439|ref|YP_007488561.1| - 3.9 7.5 16.1 5.5 7.0 2.4 2.1 1 1 1 2 2 2 0 Cortexillin I, coiled coil DinB_2 PF12867.2 gi|452208439|ref|YP_007488561.1| - 4 7.7 5.4 17 5.7 0.2 2.1 1 1 1 2 2 2 0 DinB superfamily Snapin_Pallidin PF14712.1 gi|452208439|ref|YP_007488561.1| - 4.2 7.7 11.7 1.1 9.5 0.9 2.2 2 0 0 2 2 2 0 Snapin/Pallidin DUF964 PF06133.6 gi|452208439|ref|YP_007488561.1| - 4.4 7.3 19.7 1.2 9.1 7.8 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF964) IncA PF04156.9 gi|452208439|ref|YP_007488561.1| - 4.7 6.7 25.3 17 4.9 17.5 1.7 1 1 0 1 1 1 0 IncA protein Phage_GPO PF05929.6 gi|452208439|ref|YP_007488561.1| - 5.1 6.2 11.8 5.6 6.1 0.6 2.0 1 1 1 2 2 2 0 Phage capsid scaffolding protein (GPO) serine peptidase SseC PF04888.7 gi|452208439|ref|YP_007488561.1| - 5.6 6.1 12.5 0.99 8.6 0.2 2.1 2 0 0 2 2 2 0 Secretion system effector C (SseC) like family Viral_P18 PF04521.8 gi|452208439|ref|YP_007488561.1| - 5.7 6.4 7.8 1.6 8.1 0.4 2.2 2 0 0 2 2 2 0 ssRNA positive strand viral 18kD cysteine rich protein AMP-binding_C_2 PF14535.1 gi|452208439|ref|YP_007488561.1| - 7.3 6.7 7.6 1.4 9.0 1.4 2.1 1 1 1 2 2 2 0 AMP-binding enzyme C-terminal domain P4Ha_N PF08336.6 gi|452208439|ref|YP_007488561.1| - 7.8 6.3 9.1 4.2 7.1 1.3 2.1 2 0 0 2 2 2 0 Prolyl 4-Hydroxylase alpha-subunit, N-terminal region CDC37_C PF08564.5 gi|452208439|ref|YP_007488561.1| - 8.1 6.3 9.5 1.4 8.8 0.5 2.4 2 1 0 2 2 2 0 Cdc37 C terminal domain DUF948 PF06103.6 gi|452208439|ref|YP_007488561.1| - 8.2 6.3 8.7 2.1 8.2 0.4 2.2 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF948) TBPIP PF07106.8 gi|452208439|ref|YP_007488561.1| - 9.3 5.7 16.0 3.9 7.0 2.4 2.0 1 1 1 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) HisKA_3 PF07730.8 gi|452208439|ref|YP_007488561.1| - 9.5 6.6 9.4 19 5.7 0.3 2.7 1 1 0 2 2 2 0 Histidine kinase V_ATPase_I PF01496.14 gi|452208439|ref|YP_007488561.1| - 9.9 3.8 14.7 53 1.4 8.9 1.8 1 1 0 1 1 1 0 V-type ATPase 116kDa subunit family Asn_synthase PF00733.16 gi|452208440|ref|YP_007488562.1| - 4.1e-10 39.5 0.2 7.6e-10 38.7 0.2 1.4 1 0 0 1 1 1 1 Asparagine synthase NAD_synthase PF02540.12 gi|452208440|ref|YP_007488562.1| - 2e-09 36.7 0.0 6.5e-09 35.0 0.0 1.7 2 0 0 2 2 2 1 NAD synthase tRNA_Me_trans PF03054.11 gi|452208440|ref|YP_007488562.1| - 2.8e-09 36.0 0.0 5.3e-06 25.2 0.1 2.2 2 0 0 2 2 2 2 tRNA methyl transferase QueC PF06508.8 gi|452208440|ref|YP_007488562.1| - 2.8e-06 26.7 0.0 1.9e-05 24.0 0.0 2.1 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC ATP_bind_3 PF01171.15 gi|452208440|ref|YP_007488562.1| - 0.004 16.6 0.0 0.014 14.8 0.0 1.9 1 1 0 1 1 1 1 PP-loop family Arginosuc_synth PF00764.14 gi|452208440|ref|YP_007488562.1| - 0.035 13.1 0.0 0.052 12.5 0.0 1.2 1 0 0 1 1 1 0 Arginosuccinate synthase PAPS_reduct PF01507.14 gi|452208440|ref|YP_007488562.1| - 0.06 13.1 0.0 0.13 12.0 0.0 1.5 1 1 1 2 2 2 0 Phosphoadenosine phosphosulfate reductase family HATPase_c PF02518.21 gi|452208441|ref|YP_007488563.1| - 1.1e-20 73.3 0.0 2.1e-20 72.4 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|452208441|ref|YP_007488563.1| - 2e-09 37.3 1.2 3.8e-09 36.4 0.9 1.5 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c_2 PF13581.1 gi|452208441|ref|YP_007488563.1| - 1e-06 28.5 0.0 1.9e-06 27.7 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.1 gi|452208441|ref|YP_007488563.1| - 1.6e-05 24.5 0.0 2.6e-05 23.8 0.0 1.3 1 0 0 1 1 1 1 GHKL domain SPOB_a PF14689.1 gi|452208441|ref|YP_007488563.1| - 0.00044 19.7 0.3 0.00078 18.9 0.2 1.4 1 0 0 1 1 1 1 Sensor_kinase_SpoOB-type, alpha-helical domain DUF2328 PF10090.4 gi|452208441|ref|YP_007488563.1| - 0.0012 18.0 0.0 0.32 10.1 0.1 2.2 2 0 0 2 2 2 2 Uncharacterized protein conserved in bacteria (DUF2328) HATPase_c_3 PF13589.1 gi|452208441|ref|YP_007488563.1| - 0.086 12.4 0.0 0.19 11.3 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase His_Phos_1 PF00300.17 gi|452208442|ref|YP_007488564.1| - 5.1e-37 127.4 0.1 6.1e-37 127.1 0.1 1.1 1 0 0 1 1 1 1 Histidine phosphatase superfamily (branch 1) His_Phos_2 PF00328.17 gi|452208442|ref|YP_007488564.1| - 0.15 11.3 0.3 0.25 10.6 0.2 1.4 1 1 0 1 1 1 0 Histidine phosphatase superfamily (branch 2) PQQ_2 PF13360.1 gi|452208443|ref|YP_007488565.1| - 3.7e-12 46.2 4.1 5.8e-07 29.2 0.6 2.8 2 1 1 3 3 3 2 PQQ-like domain PQQ_3 PF13570.1 gi|452208443|ref|YP_007488565.1| - 0.068 13.4 31.7 2.1 8.7 0.1 7.7 7 1 1 8 8 8 0 PQQ-like domain DUF3209 PF11483.3 gi|452208444|ref|YP_007488566.1| - 2.2e-55 186.2 5.6 2.5e-55 186.0 3.9 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3209) DUF1843 PF08898.5 gi|452208444|ref|YP_007488566.1| - 0.14 12.2 2.3 9.4 6.3 0.6 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF1843) CbiX PF01903.12 gi|452208445|ref|YP_007488567.1| - 7.3e-46 154.6 0.0 3.3e-22 78.5 0.0 2.4 2 0 0 2 2 2 2 CbiX 2Fe-2S_thioredx PF01257.14 gi|452208445|ref|YP_007488567.1| - 2.6e-06 27.0 0.0 3.9e-06 26.5 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin-like [2Fe-2S] ferredoxin CbiK PF06180.6 gi|452208445|ref|YP_007488567.1| - 0.0018 17.4 0.0 0.54 9.3 0.0 2.1 1 1 1 2 2 2 2 Cobalt chelatase (CbiK) Suc_Fer-like PF06999.7 gi|452208445|ref|YP_007488567.1| - 0.005 16.8 0.0 0.59 10.1 0.0 2.5 2 1 0 2 2 2 1 Sucrase/ferredoxin-like DUF1636 PF07845.6 gi|452208445|ref|YP_007488567.1| - 0.03 14.5 0.6 0.27 11.4 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1636) LAGLIDADG_3 PF14528.1 gi|452208446|ref|YP_007488568.1| - 0.0084 16.3 0.0 0.039 14.2 0.0 1.9 2 0 0 2 2 2 1 LAGLIDADG-like domain Hom_end PF05204.9 gi|452208446|ref|YP_007488568.1| - 0.1 12.5 0.0 0.25 11.3 0.0 1.5 2 0 0 2 2 2 0 Homing endonuclease Fer4_15 PF13459.1 gi|452208447|ref|YP_007488569.1| - 4.4e-13 49.5 2.6 5.1e-13 49.3 1.8 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|452208447|ref|YP_007488569.1| - 3.6e-05 24.0 0.9 4.8e-05 23.6 0.6 1.4 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_19 PF06902.6 gi|452208447|ref|YP_007488569.1| - 0.0029 17.3 0.0 0.0065 16.2 0.0 1.5 1 1 0 1 1 1 1 Divergent 4Fe-4S mono-cluster Fer4 PF00037.22 gi|452208447|ref|YP_007488569.1| - 0.14 11.8 3.4 0.53 9.9 0.2 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_6 PF12837.2 gi|452208447|ref|YP_007488569.1| - 0.44 10.5 1.9 20 5.2 0.2 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain TP_methylase PF00590.15 gi|452208448|ref|YP_007488570.1| - 2.6e-35 122.0 0.2 3.3e-35 121.6 0.2 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases TP_methylase PF00590.15 gi|452208449|ref|YP_007488571.1| - 4.1e-38 131.1 0.2 5.9e-38 130.6 0.2 1.3 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases CbiG_N PF11760.3 gi|452208450|ref|YP_007488572.1| - 6.7e-31 105.8 0.0 1.5e-30 104.7 0.0 1.6 1 0 0 1 1 1 1 Cobalamin synthesis G N-terminal CbiG_C PF01890.11 gi|452208450|ref|YP_007488572.1| - 3.5e-25 88.5 0.3 7.8e-25 87.4 0.1 1.7 2 0 0 2 2 2 1 Cobalamin synthesis G C-terminus TP_methylase PF00590.15 gi|452208451|ref|YP_007488573.1| - 1.7e-36 125.8 0.4 2.2e-36 125.5 0.3 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases TP_methylase PF00590.15 gi|452208452|ref|YP_007488574.1| - 5.8e-35 120.8 0.2 6.9e-35 120.6 0.2 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Glyoxalase_2 PF12681.2 gi|452208452|ref|YP_007488574.1| - 0.024 15.2 0.2 0.063 13.8 0.1 1.8 1 1 0 1 1 1 0 Glyoxalase-like domain Methyltransf_18 PF12847.2 gi|452208453|ref|YP_007488575.1| - 1.7e-12 47.9 0.1 2.3e-12 47.4 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|452208453|ref|YP_007488575.1| - 2.6e-06 27.0 0.0 3.4e-06 26.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|452208453|ref|YP_007488575.1| - 1.3e-05 24.6 0.0 4.3e-05 22.9 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase small domain Methyltransf_26 PF13659.1 gi|452208453|ref|YP_007488575.1| - 1.5e-05 25.0 0.2 2.5e-05 24.2 0.2 1.3 1 1 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|452208453|ref|YP_007488575.1| - 0.00021 20.7 0.0 0.0003 20.2 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_11 PF08241.7 gi|452208453|ref|YP_007488575.1| - 0.00025 21.4 0.0 0.0005 20.5 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|452208453|ref|YP_007488575.1| - 0.00026 20.6 0.0 0.00035 20.1 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_25 PF13649.1 gi|452208453|ref|YP_007488575.1| - 0.00063 20.0 0.0 0.00084 19.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain GATase_3 PF07685.9 gi|452208453|ref|YP_007488575.1| - 0.0074 15.8 0.0 0.014 15.0 0.0 1.4 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain Methyltransf_24 PF13578.1 gi|452208453|ref|YP_007488575.1| - 0.01 16.6 0.0 0.016 16.0 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain RrnaAD PF00398.15 gi|452208453|ref|YP_007488575.1| - 0.011 14.7 0.0 0.014 14.4 0.0 1.1 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Methyltransf_12 PF08242.7 gi|452208453|ref|YP_007488575.1| - 0.038 14.4 0.0 0.053 14.0 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain ADH_zinc_N PF00107.21 gi|452208453|ref|YP_007488575.1| - 0.052 13.0 0.3 0.1 12.1 0.2 1.6 1 1 0 1 1 1 0 Zinc-binding dehydrogenase Methyltransf_4 PF02390.12 gi|452208453|ref|YP_007488575.1| - 0.17 10.9 0.0 0.23 10.4 0.0 1.2 1 0 0 1 1 1 0 Putative methyltransferase ADH_zinc_N PF00107.21 gi|452208454|ref|YP_007488576.1| - 1.2e-27 95.9 0.6 2e-27 95.2 0.4 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.7 gi|452208454|ref|YP_007488576.1| - 1.6e-26 92.1 1.5 1.6e-26 92.1 1.1 1.8 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain AlaDh_PNT_C PF01262.16 gi|452208454|ref|YP_007488576.1| - 8.5e-05 22.1 0.2 0.00014 21.5 0.2 1.4 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain 2-Hacid_dh_C PF02826.14 gi|452208454|ref|YP_007488576.1| - 0.00024 20.2 0.1 0.00042 19.5 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ADH_zinc_N_2 PF13602.1 gi|452208454|ref|YP_007488576.1| - 0.00028 21.8 0.2 0.00076 20.3 0.1 1.8 2 0 0 2 2 2 1 Zinc-binding dehydrogenase ELFV_dehydrog PF00208.16 gi|452208454|ref|YP_007488576.1| - 0.0072 15.9 0.3 0.01 15.4 0.2 1.2 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Methyltransf_11 PF08241.7 gi|452208454|ref|YP_007488576.1| - 0.0078 16.6 0.2 0.028 14.8 0.2 2.0 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|452208454|ref|YP_007488576.1| - 0.082 13.4 0.4 0.28 11.7 0.1 2.0 2 1 0 2 2 2 0 Methyltransferase domain Zn_ribbon_recom PF13408.1 gi|452208455|ref|YP_007488577.1| - 0.0013 18.8 0.4 0.0018 18.4 0.3 1.3 1 0 0 1 1 1 1 Recombinase zinc beta ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|452208455|ref|YP_007488577.1| - 0.0021 17.8 1.9 0.0035 17.1 1.3 1.4 1 0 0 1 1 1 1 Transposase zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|452208455|ref|YP_007488577.1| - 0.0026 17.6 0.5 0.37 10.7 0.0 2.2 2 0 0 2 2 2 1 Zinc ribbon domain GFA PF04828.9 gi|452208455|ref|YP_007488577.1| - 0.045 13.7 0.2 0.065 13.1 0.1 1.3 1 1 0 1 1 1 0 Glutathione-dependent formaldehyde-activating enzyme zf-ribbon_3 PF13248.1 gi|452208455|ref|YP_007488577.1| - 0.055 12.7 1.9 0.063 12.5 0.2 1.8 2 0 0 2 2 2 0 zinc-ribbon domain zf-C2HC_2 PF13913.1 gi|452208455|ref|YP_007488577.1| - 0.059 13.0 2.4 2.5 7.8 0.0 2.3 2 0 0 2 2 2 0 zinc-finger of a C2HC-type zf-Mss51 PF13824.1 gi|452208455|ref|YP_007488577.1| - 0.15 11.9 0.6 0.24 11.2 0.2 1.5 2 0 0 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 zinc_ribbon_2 PF13240.1 gi|452208455|ref|YP_007488577.1| - 0.18 11.3 0.8 0.18 11.3 0.5 2.1 2 0 0 2 2 2 0 zinc-ribbon domain Ogr_Delta PF04606.7 gi|452208455|ref|YP_007488577.1| - 0.54 9.9 4.2 5.7 6.6 2.9 2.1 1 1 0 1 1 1 0 Ogr/Delta-like zinc finger DUF35_N PF12172.3 gi|452208455|ref|YP_007488577.1| - 2 8.4 6.3 0.72 9.8 1.5 2.1 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-RING_3 PF14369.1 gi|452208455|ref|YP_007488577.1| - 3.2 7.8 5.2 0.52 10.3 0.4 1.9 3 0 0 3 3 3 0 zinc-finger DNA_ligase_ZBD PF03119.11 gi|452208455|ref|YP_007488577.1| - 8.3 6.2 7.1 0.52 10.0 0.9 2.1 2 1 1 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain AAA_5 PF07728.9 gi|452208456|ref|YP_007488578.1| - 5.2e-16 58.6 0.0 9.4e-16 57.8 0.0 1.5 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_3 PF07726.6 gi|452208456|ref|YP_007488578.1| - 3e-05 23.6 0.0 0.1 12.1 0.0 3.0 2 1 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|452208456|ref|YP_007488578.1| - 3.8e-05 23.8 0.1 0.00016 21.7 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|452208456|ref|YP_007488578.1| - 3.9e-05 24.4 0.0 0.00012 22.8 0.0 1.8 1 0 0 1 1 1 1 AAA domain AAA PF00004.24 gi|452208456|ref|YP_007488578.1| - 4.6e-05 23.6 0.0 0.00011 22.3 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.1 gi|452208456|ref|YP_007488578.1| - 0.00015 21.4 0.1 0.00044 19.9 0.1 1.8 1 0 0 1 1 1 1 Part of AAA domain Sigma54_activ_2 PF14532.1 gi|452208456|ref|YP_007488578.1| - 0.00026 21.0 0.0 0.00068 19.7 0.0 1.7 2 0 0 2 2 1 1 Sigma-54 interaction domain AAA_16 PF13191.1 gi|452208456|ref|YP_007488578.1| - 0.00062 19.7 0.1 0.0075 16.2 0.0 2.2 1 1 1 2 2 2 1 AAA ATPase domain Mg_chelatase PF01078.16 gi|452208456|ref|YP_007488578.1| - 0.00067 18.8 0.0 0.0013 17.9 0.0 1.4 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_18 PF13238.1 gi|452208456|ref|YP_007488578.1| - 0.00075 19.8 0.1 0.0019 18.5 0.1 1.7 1 1 0 1 1 1 1 AAA domain RNA_helicase PF00910.17 gi|452208456|ref|YP_007488578.1| - 0.0029 17.7 0.0 0.0094 16.1 0.0 1.8 2 0 0 2 2 2 1 RNA helicase ABC_tran PF00005.22 gi|452208456|ref|YP_007488578.1| - 0.0045 17.2 0.0 0.0075 16.5 0.0 1.3 1 0 0 1 1 1 1 ABC transporter RuvB_N PF05496.7 gi|452208456|ref|YP_007488578.1| - 0.0062 15.6 0.1 0.015 14.3 0.0 1.6 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus AAA_25 PF13481.1 gi|452208456|ref|YP_007488578.1| - 0.0067 15.8 0.0 0.013 14.9 0.0 1.5 1 0 0 1 1 1 1 AAA domain IstB_IS21 PF01695.12 gi|452208456|ref|YP_007488578.1| - 0.011 15.1 0.0 0.14 11.5 0.0 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein UPF0079 PF02367.12 gi|452208456|ref|YP_007488578.1| - 0.016 14.8 0.0 0.028 14.0 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_30 PF13604.1 gi|452208456|ref|YP_007488578.1| - 0.039 13.5 0.0 0.084 12.4 0.0 1.5 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|452208456|ref|YP_007488578.1| - 0.047 13.6 0.1 0.1 12.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_11 PF13086.1 gi|452208456|ref|YP_007488578.1| - 0.055 13.0 0.0 0.079 12.5 0.0 1.1 1 0 0 1 1 1 0 AAA domain NTPase_1 PF03266.10 gi|452208456|ref|YP_007488578.1| - 0.065 12.9 0.0 0.4 10.3 0.0 2.1 2 0 0 2 2 2 0 NTPase KTI12 PF08433.5 gi|452208456|ref|YP_007488578.1| - 0.094 11.9 0.0 0.16 11.1 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 Sigma54_activat PF00158.21 gi|452208456|ref|YP_007488578.1| - 0.13 11.6 0.0 0.29 10.6 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain T2SE PF00437.15 gi|452208456|ref|YP_007488578.1| - 0.15 10.8 0.0 0.24 10.2 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_14 PF13173.1 gi|452208456|ref|YP_007488578.1| - 0.16 11.9 0.0 0.48 10.3 0.0 1.8 1 1 0 1 1 1 0 AAA domain TIP49 PF06068.8 gi|452208456|ref|YP_007488578.1| - 0.17 10.6 0.0 0.27 9.9 0.0 1.2 1 0 0 1 1 1 0 TIP49 C-terminus HTH_10 PF04967.7 gi|452208458|ref|YP_007488580.1| - 1.5e-20 72.4 0.0 2.2e-20 71.9 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain GerE PF00196.14 gi|452208458|ref|YP_007488580.1| - 0.0017 17.6 0.5 0.019 14.2 0.3 2.1 1 1 0 1 1 1 1 Bacterial regulatory proteins, luxR family Sigma70_r4 PF04545.11 gi|452208458|ref|YP_007488580.1| - 0.0021 17.3 0.0 0.0054 16.0 0.0 1.7 1 0 0 1 1 1 1 Sigma-70, region 4 LexA_DNA_bind PF01726.11 gi|452208458|ref|YP_007488580.1| - 0.0071 15.8 0.1 0.031 13.8 0.1 2.0 1 1 0 1 1 1 1 LexA DNA binding domain HTH_20 PF12840.2 gi|452208458|ref|YP_007488580.1| - 0.018 14.8 0.1 0.052 13.3 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_5 PF01022.15 gi|452208458|ref|YP_007488580.1| - 0.053 13.1 0.0 0.18 11.4 0.0 1.8 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|452208459|ref|YP_007488581.1| - 5.6e-11 42.0 0.8 8.1e-11 41.5 0.5 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|452208459|ref|YP_007488581.1| - 1.8e-08 33.8 0.2 2.7e-08 33.3 0.1 1.3 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|452208459|ref|YP_007488581.1| - 6.9e-08 31.9 1.0 1e-07 31.4 0.7 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.14 gi|452208459|ref|YP_007488581.1| - 6.8e-06 25.6 0.0 1e-05 25.1 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|452208459|ref|YP_007488581.1| - 0.00013 21.2 0.0 0.00021 20.6 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding ArsR PF09824.4 gi|452208459|ref|YP_007488581.1| - 0.00045 19.5 0.0 0.00056 19.2 0.0 1.1 1 0 0 1 1 1 1 ArsR transcriptional regulator HTH_5 PF01022.15 gi|452208459|ref|YP_007488581.1| - 0.0012 18.4 0.0 0.0018 17.8 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_11 PF08279.7 gi|452208459|ref|YP_007488581.1| - 0.0022 17.6 0.1 0.0035 16.9 0.0 1.3 1 0 0 1 1 1 1 HTH domain DUF1492 PF07374.6 gi|452208459|ref|YP_007488581.1| - 0.028 14.5 0.0 0.043 13.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1492) PadR PF03551.9 gi|452208459|ref|YP_007488581.1| - 0.033 13.9 0.0 0.052 13.3 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family MarR PF01047.17 gi|452208459|ref|YP_007488581.1| - 0.035 13.8 0.0 0.051 13.2 0.0 1.2 1 0 0 1 1 1 0 MarR family HTH_27 PF13463.1 gi|452208459|ref|YP_007488581.1| - 0.11 12.8 0.0 0.18 12.1 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain RP-C PF03428.8 gi|452208459|ref|YP_007488581.1| - 0.12 11.8 0.0 0.16 11.4 0.0 1.3 1 0 0 1 1 1 0 Replication protein C N-terminal domain GntR PF00392.16 gi|452208459|ref|YP_007488581.1| - 0.14 11.6 0.7 0.22 10.9 0.5 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family Zn-ribbon_8 PF09723.5 gi|452208460|ref|YP_007488582.1| - 1.1e-05 25.2 1.9 1.4e-05 24.9 1.3 1.2 1 0 0 1 1 1 1 Zinc ribbon domain zinc_ribbon_2 PF13240.1 gi|452208460|ref|YP_007488582.1| - 0.0012 18.2 0.3 0.0059 16.0 0.2 2.0 1 1 0 1 1 1 1 zinc-ribbon domain zf-C3HC4_3 PF13920.1 gi|452208460|ref|YP_007488582.1| - 0.017 14.7 0.7 0.022 14.4 0.3 1.4 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) zf-ribbon_3 PF13248.1 gi|452208460|ref|YP_007488582.1| - 0.026 13.7 1.4 0.13 11.4 1.0 2.0 1 1 0 1 1 1 0 zinc-ribbon domain Cys_rich_CPXG PF14255.1 gi|452208460|ref|YP_007488582.1| - 0.032 14.0 1.4 0.055 13.3 0.9 1.5 1 1 0 1 1 1 0 Cysteine-rich CPXCG zf-dskA_traR PF01258.12 gi|452208460|ref|YP_007488582.1| - 0.034 13.8 4.0 0.22 11.2 0.8 2.3 2 0 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger RNHCP PF12647.2 gi|452208460|ref|YP_007488582.1| - 0.043 13.6 0.5 0.044 13.5 0.3 1.1 1 0 0 1 1 1 0 RNHCP domain PhnA_Zn_Ribbon PF08274.7 gi|452208460|ref|YP_007488582.1| - 0.05 13.3 0.1 0.05 13.3 0.1 2.0 2 0 0 2 2 2 0 PhnA Zinc-Ribbon DUF4379 PF14311.1 gi|452208460|ref|YP_007488582.1| - 0.056 13.2 0.3 0.077 12.8 0.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4379) Elf1 PF05129.8 gi|452208460|ref|YP_007488582.1| - 0.059 13.0 0.9 0.07 12.8 0.6 1.1 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like HypA PF01155.14 gi|452208460|ref|YP_007488582.1| - 0.085 12.5 1.4 0.097 12.3 1.0 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family DZR PF12773.2 gi|452208460|ref|YP_007488582.1| - 0.16 11.7 2.3 0.4 10.5 1.6 1.6 1 1 0 1 1 1 0 Double zinc ribbon Prok-RING_4 PF14447.1 gi|452208460|ref|YP_007488582.1| - 0.47 10.0 3.4 0.67 9.5 1.1 1.9 2 0 0 2 2 2 0 Prokaryotic RING finger family 4 Nudix_N_2 PF14803.1 gi|452208460|ref|YP_007488582.1| - 1.4 8.6 5.4 1.5 8.5 0.2 2.1 2 0 0 2 2 2 0 Nudix N-terminal Lar_restr_allev PF14354.1 gi|452208460|ref|YP_007488582.1| - 6.7 7.1 6.5 23 5.4 1.1 2.1 1 1 1 2 2 2 0 Restriction alleviation protein Lar Pyridox_ox_2 PF12900.2 gi|452208461|ref|YP_007488583.1| - 3.2e-14 52.9 0.0 3.8e-14 52.7 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_oxidase PF01243.15 gi|452208461|ref|YP_007488583.1| - 2e-05 24.5 0.0 3.8e-05 23.6 0.0 1.5 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase PaaB PF06243.6 gi|452208463|ref|YP_007488585.1| - 9.6e-14 51.2 0.0 1.1e-13 51.0 0.0 1.1 1 0 0 1 1 1 1 Phenylacetic acid degradation B Radical_SAM PF04055.16 gi|452208464|ref|YP_007488586.1| - 2.2e-22 79.9 0.0 5.6e-22 78.6 0.0 1.7 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|452208464|ref|YP_007488586.1| - 1.1e-11 45.0 0.0 2.3e-11 43.9 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|452208464|ref|YP_007488586.1| - 1.4e-08 34.7 0.0 3.8e-08 33.3 0.0 1.7 2 0 0 2 2 2 1 4Fe-4S single cluster domain SPASM PF13186.1 gi|452208464|ref|YP_007488586.1| - 0.00039 20.7 0.0 0.00086 19.5 0.0 1.6 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain ThiS PF02597.15 gi|452208465|ref|YP_007488587.1| - 1.6e-06 28.4 0.0 9.5e-06 25.9 0.0 2.0 1 1 0 1 1 1 1 ThiS family NAD_binding_8 PF13450.1 gi|452208466|ref|YP_007488588.1| - 7.5e-11 41.8 0.1 2.5e-10 40.2 0.1 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Amino_oxidase PF01593.19 gi|452208466|ref|YP_007488588.1| - 2.7e-05 23.4 1.8 0.032 13.3 0.0 2.2 1 1 1 2 2 2 2 Flavin containing amine oxidoreductase AlaDh_PNT_C PF01262.16 gi|452208466|ref|YP_007488588.1| - 0.011 15.3 0.1 0.017 14.7 0.1 1.2 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Methyltransf_26 PF13659.1 gi|452208466|ref|YP_007488588.1| - 0.082 12.9 0.6 0.17 11.8 0.4 1.7 1 1 0 1 1 1 0 Methyltransferase domain adh_short PF00106.20 gi|452208467|ref|YP_007488589.1| - 2.6e-22 79.5 0.9 3.4e-22 79.1 0.6 1.2 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|452208467|ref|YP_007488589.1| - 2.1e-15 57.1 0.0 6.2e-14 52.3 0.0 2.0 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|452208467|ref|YP_007488589.1| - 7e-10 38.8 0.3 1.1e-09 38.2 0.2 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|452208467|ref|YP_007488589.1| - 0.024 14.0 0.0 0.033 13.6 0.0 1.2 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family NanE PF04131.9 gi|452208467|ref|YP_007488589.1| - 0.083 11.8 0.1 0.17 10.8 0.1 1.5 1 0 0 1 1 1 0 Putative N-acetylmannosamine-6-phosphate epimerase ArfGap PF01412.13 gi|452208469|ref|YP_007488591.1| - 0.0046 16.7 1.0 0.0082 15.9 0.7 1.3 1 0 0 1 1 1 1 Putative GTPase activating protein for Arf TF_Zn_Ribbon PF08271.7 gi|452208469|ref|YP_007488591.1| - 0.021 14.1 1.2 0.037 13.3 0.8 1.4 1 0 0 1 1 1 0 TFIIB zinc-binding DUF3040 PF11239.3 gi|452208470|ref|YP_007488592.1| - 2.6 8.1 11.7 3.4 7.7 0.7 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3040) HTH_5 PF01022.15 gi|452208471|ref|YP_007488593.1| - 8.6e-18 63.7 0.0 7.4e-16 57.5 0.1 2.3 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|452208471|ref|YP_007488593.1| - 2.1e-17 62.6 0.3 4.3e-12 45.6 0.1 2.4 2 0 0 2 2 2 2 Helix-turn-helix domain MarR_2 PF12802.2 gi|452208471|ref|YP_007488593.1| - 2.9e-14 52.4 0.5 1.6e-07 30.9 0.1 2.4 2 0 0 2 2 2 2 MarR family TrmB PF01978.14 gi|452208471|ref|YP_007488593.1| - 4.5e-11 42.2 0.0 6.4e-05 22.5 0.0 2.3 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|452208471|ref|YP_007488593.1| - 3.4e-08 32.7 0.7 9.8e-08 31.2 0.0 2.1 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.1 gi|452208471|ref|YP_007488593.1| - 4e-08 33.4 0.1 6.8e-05 23.1 0.0 2.4 2 0 0 2 2 2 2 Winged helix DNA-binding domain Rrf2 PF02082.15 gi|452208471|ref|YP_007488593.1| - 1.3e-07 31.5 0.0 0.0039 17.2 0.0 2.3 2 0 0 2 2 2 2 Transcriptional regulator Fe_dep_repress PF01325.14 gi|452208471|ref|YP_007488593.1| - 3.6e-06 26.8 0.0 3.5e-05 23.6 0.0 2.1 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain MarR PF01047.17 gi|452208471|ref|YP_007488593.1| - 3.1e-05 23.5 0.0 0.00061 19.4 0.0 2.2 2 0 0 2 2 2 1 MarR family HTH_Crp_2 PF13545.1 gi|452208471|ref|YP_007488593.1| - 3.5e-05 23.5 0.0 0.044 13.5 0.0 2.6 3 0 0 3 3 2 2 Crp-like helix-turn-helix domain HTH_11 PF08279.7 gi|452208471|ref|YP_007488593.1| - 5.8e-05 22.6 0.0 0.00014 21.4 0.0 1.6 1 0 0 1 1 1 1 HTH domain HTH_IclR PF09339.5 gi|452208471|ref|YP_007488593.1| - 0.00025 20.5 0.2 0.29 10.7 0.0 2.9 2 1 0 2 2 2 2 IclR helix-turn-helix domain GntR PF00392.16 gi|452208471|ref|YP_007488593.1| - 0.00042 19.6 0.0 0.84 9.1 0.0 2.4 2 0 0 2 2 2 2 Bacterial regulatory proteins, gntR family HTH_CodY PF08222.6 gi|452208471|ref|YP_007488593.1| - 0.0011 18.2 0.0 0.076 12.3 0.0 2.3 2 0 0 2 2 2 1 CodY helix-turn-helix domain LexA_DNA_bind PF01726.11 gi|452208471|ref|YP_007488593.1| - 0.0012 18.4 0.0 0.15 11.6 0.0 2.7 2 0 0 2 2 2 1 LexA DNA binding domain HxlR PF01638.12 gi|452208471|ref|YP_007488593.1| - 0.0019 17.7 0.0 0.38 10.4 0.0 2.4 2 0 0 2 2 2 1 HxlR-like helix-turn-helix HTH_23 PF13384.1 gi|452208471|ref|YP_007488593.1| - 0.0028 17.2 0.0 0.011 15.3 0.0 2.0 1 0 0 1 1 1 1 Homeodomain-like domain DUF2250 PF10007.4 gi|452208471|ref|YP_007488593.1| - 0.0082 16.0 0.0 0.95 9.4 0.0 2.2 2 0 0 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_10 PF04967.7 gi|452208471|ref|YP_007488593.1| - 0.009 15.5 0.0 0.026 14.1 0.0 1.7 2 0 0 2 2 1 1 HTH DNA binding domain HTH_29 PF13551.1 gi|452208471|ref|YP_007488593.1| - 0.013 15.6 0.1 1.3 9.1 0.0 2.4 2 0 0 2 2 2 0 Winged helix-turn helix PadR PF03551.9 gi|452208471|ref|YP_007488593.1| - 0.014 15.1 0.0 0.084 12.6 0.0 2.4 2 1 0 2 2 2 0 Transcriptional regulator PadR-like family DUF3618 PF12277.3 gi|452208471|ref|YP_007488593.1| - 0.014 15.4 0.2 0.1 12.6 0.2 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3618) ArsR PF09824.4 gi|452208471|ref|YP_007488593.1| - 0.028 13.7 0.0 0.067 12.5 0.0 1.5 2 0 0 2 2 2 0 ArsR transcriptional regulator DUF2513 PF10711.4 gi|452208471|ref|YP_007488593.1| - 0.051 13.6 0.0 0.091 12.8 0.0 1.3 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) HTH_AsnC-type PF13404.1 gi|452208471|ref|YP_007488593.1| - 0.055 13.0 4.0 1.1 8.8 0.0 4.1 4 1 0 4 4 4 0 AsnC-type helix-turn-helix domain HTH_28 PF13518.1 gi|452208471|ref|YP_007488593.1| - 0.066 13.2 0.1 0.39 10.7 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain Sulfolobus_pRN PF05584.6 gi|452208471|ref|YP_007488593.1| - 0.083 12.8 0.0 2.8 7.9 0.0 2.4 3 0 0 3 3 2 0 Sulfolobus plasmid regulatory protein DDRGK PF09756.4 gi|452208471|ref|YP_007488593.1| - 0.1 11.9 0.0 0.17 11.2 0.0 1.2 1 0 0 1 1 1 0 DDRGK domain DUF387 PF04079.11 gi|452208471|ref|YP_007488593.1| - 0.11 11.7 0.0 0.62 9.4 0.0 1.9 2 0 0 2 2 2 0 Putative transcriptional regulators (Ypuh-like) GTP_EFTU PF00009.22 gi|452208472|ref|YP_007488594.1| - 4.2e-31 107.8 0.0 3e-30 105.0 0.0 2.1 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain IF-2 PF11987.3 gi|452208472|ref|YP_007488594.1| - 1e-20 73.5 2.9 2.7e-20 72.2 2.0 1.7 1 0 0 1 1 1 1 Translation-initiation factor 2 GTP_EFTU_D2 PF03144.20 gi|452208472|ref|YP_007488594.1| - 4.1e-15 55.6 5.2 6.4e-10 39.0 0.1 3.0 3 0 0 3 3 3 2 Elongation factor Tu domain 2 GTP_EFTU_D4 PF14578.1 gi|452208472|ref|YP_007488594.1| - 5.6e-11 41.9 0.0 2e-10 40.1 0.0 2.0 2 0 0 2 2 2 1 Elongation factor Tu domain 4 MMR_HSR1 PF01926.18 gi|452208472|ref|YP_007488594.1| - 5.6e-06 26.2 0.0 1.8e-05 24.6 0.0 1.9 1 0 0 1 1 1 1 50S ribosome-binding GTPase ATP_bind_1 PF03029.12 gi|452208472|ref|YP_007488594.1| - 0.0021 17.6 0.0 0.0076 15.8 0.0 1.9 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein Dynamin_N PF00350.18 gi|452208472|ref|YP_007488594.1| - 0.0075 16.0 0.1 0.57 9.9 0.0 2.5 1 1 1 2 2 2 1 Dynamin family Miro PF08477.8 gi|452208472|ref|YP_007488594.1| - 0.0084 16.6 0.0 0.019 15.4 0.0 1.6 1 0 0 1 1 1 1 Miro-like protein Lactamase_B_2 PF12706.2 gi|452208473|ref|YP_007488595.1| - 2.6e-29 102.1 0.1 3.6e-29 101.7 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|452208473|ref|YP_007488595.1| - 2.2e-15 56.8 3.0 6.4e-14 52.0 1.3 2.5 1 1 1 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_4 PF13691.1 gi|452208473|ref|YP_007488595.1| - 3.2e-05 23.3 0.0 6.2e-05 22.3 0.0 1.4 1 0 0 1 1 1 1 tRNase Z endonuclease AAA PF00004.24 gi|452208474|ref|YP_007488596.1| - 4.9e-39 133.5 0.1 2e-38 131.5 0.0 2.1 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.1 gi|452208474|ref|YP_007488596.1| - 1.1e-07 32.6 1.4 8.6e-07 29.7 0.0 2.9 2 1 0 2 2 2 1 AAA domain AAA_5 PF07728.9 gi|452208474|ref|YP_007488596.1| - 1.3e-06 28.2 0.0 3.4e-05 23.5 0.0 2.9 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.1 gi|452208474|ref|YP_007488596.1| - 2e-05 24.6 4.8 0.0019 18.2 2.4 3.5 1 1 1 2 2 2 1 AAA ATPase domain AAA_33 PF13671.1 gi|452208474|ref|YP_007488596.1| - 4.7e-05 23.2 0.0 0.00013 21.8 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|452208474|ref|YP_007488596.1| - 6.1e-05 23.3 0.0 0.00064 20.0 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|452208474|ref|YP_007488596.1| - 0.00026 21.1 0.1 0.0035 17.4 0.0 2.5 2 1 0 2 2 1 1 AAA domain AAA_28 PF13521.1 gi|452208474|ref|YP_007488596.1| - 0.00061 19.7 0.2 0.0034 17.3 0.0 2.3 2 2 0 2 2 2 1 AAA domain RuvB_N PF05496.7 gi|452208474|ref|YP_007488596.1| - 0.00091 18.3 0.0 0.0017 17.4 0.0 1.6 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_2 PF07724.9 gi|452208474|ref|YP_007488596.1| - 0.001 19.0 0.0 0.0028 17.5 0.0 1.8 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) TIP49 PF06068.8 gi|452208474|ref|YP_007488596.1| - 0.0012 17.5 0.0 0.0032 16.2 0.0 1.7 2 0 0 2 2 2 1 TIP49 C-terminus DUF815 PF05673.8 gi|452208474|ref|YP_007488596.1| - 0.0031 16.4 0.1 0.0053 15.7 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF815) SKI PF01202.17 gi|452208474|ref|YP_007488596.1| - 0.0043 16.9 0.0 0.011 15.6 0.0 1.7 1 0 0 1 1 1 1 Shikimate kinase AAA_19 PF13245.1 gi|452208474|ref|YP_007488596.1| - 0.005 16.5 0.0 0.014 15.1 0.0 1.7 1 0 0 1 1 1 1 Part of AAA domain IstB_IS21 PF01695.12 gi|452208474|ref|YP_007488596.1| - 0.0051 16.2 0.1 0.014 14.7 0.0 1.7 1 1 0 1 1 1 1 IstB-like ATP binding protein MMR_HSR1 PF01926.18 gi|452208474|ref|YP_007488596.1| - 0.0051 16.7 0.0 0.012 15.6 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase AAA_25 PF13481.1 gi|452208474|ref|YP_007488596.1| - 0.0065 15.8 0.1 0.023 14.1 0.0 2.1 1 1 0 1 1 1 1 AAA domain Mg_chelatase PF01078.16 gi|452208474|ref|YP_007488596.1| - 0.0077 15.4 0.0 0.014 14.5 0.0 1.4 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_3 PF07726.6 gi|452208474|ref|YP_007488596.1| - 0.015 14.9 0.1 0.033 13.7 0.0 1.7 2 0 0 2 2 1 0 ATPase family associated with various cellular activities (AAA) Sigma54_activ_2 PF14532.1 gi|452208474|ref|YP_007488596.1| - 0.025 14.6 0.0 0.06 13.3 0.0 1.6 1 0 0 1 1 1 0 Sigma-54 interaction domain Cytidylate_kin2 PF13189.1 gi|452208474|ref|YP_007488596.1| - 0.026 14.4 0.0 0.054 13.3 0.0 1.5 1 0 0 1 1 1 0 Cytidylate kinase-like family T2SE PF00437.15 gi|452208474|ref|YP_007488596.1| - 0.026 13.4 0.0 0.048 12.5 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein ResIII PF04851.10 gi|452208474|ref|YP_007488596.1| - 0.028 14.2 0.0 0.041 13.7 0.0 1.3 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit AAA_14 PF13173.1 gi|452208474|ref|YP_007488596.1| - 0.028 14.3 0.0 0.075 12.9 0.0 1.7 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|452208474|ref|YP_007488596.1| - 0.028 14.5 0.0 0.055 13.6 0.0 1.6 1 0 0 1 1 1 0 RNA helicase Zeta_toxin PF06414.7 gi|452208474|ref|YP_007488596.1| - 0.034 13.2 0.0 0.066 12.3 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin NACHT PF05729.7 gi|452208474|ref|YP_007488596.1| - 0.056 13.0 0.0 1.9 8.1 0.0 2.3 1 1 0 2 2 2 0 NACHT domain AAA_11 PF13086.1 gi|452208474|ref|YP_007488596.1| - 0.065 12.8 0.0 0.11 12.0 0.0 1.4 1 1 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|452208474|ref|YP_007488596.1| - 0.068 13.4 0.0 0.17 12.1 0.0 1.7 1 0 0 1 1 1 0 ABC transporter AAA_24 PF13479.1 gi|452208474|ref|YP_007488596.1| - 0.13 11.8 0.0 0.24 10.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain Lactamase_B_2 PF12706.2 gi|452208475|ref|YP_007488597.1| - 9.6e-19 67.6 0.4 1.5e-18 67.0 0.3 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|452208475|ref|YP_007488597.1| - 6.3e-08 32.4 4.2 1e-07 31.7 2.9 1.5 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.1 gi|452208475|ref|YP_007488597.1| - 0.092 12.4 0.0 0.18 11.5 0.0 1.5 1 1 0 1 1 1 0 Beta-lactamase superfamily domain ABC_tran PF00005.22 gi|452208476|ref|YP_007488598.1| - 3.3e-28 98.6 0.0 4.9e-28 98.1 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|452208476|ref|YP_007488598.1| - 7.4e-16 58.9 0.0 1.8e-08 34.6 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|452208476|ref|YP_007488598.1| - 1.8e-05 24.0 0.0 0.12 11.4 0.0 2.0 2 0 0 2 2 2 2 AAA ATPase domain AAA_28 PF13521.1 gi|452208476|ref|YP_007488598.1| - 0.00018 21.4 0.0 0.00031 20.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|452208476|ref|YP_007488598.1| - 0.00026 21.0 0.0 0.00041 20.3 0.0 1.3 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.1 gi|452208476|ref|YP_007488598.1| - 0.00037 19.9 0.1 0.00079 18.9 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|452208476|ref|YP_007488598.1| - 0.00078 19.8 0.3 0.0012 19.2 0.2 1.1 1 0 0 1 1 1 1 AAA domain UPF0079 PF02367.12 gi|452208476|ref|YP_007488598.1| - 0.0025 17.4 0.1 0.0042 16.7 0.0 1.3 1 0 0 1 1 1 1 Uncharacterised P-loop hydrolase UPF0079 AAA_30 PF13604.1 gi|452208476|ref|YP_007488598.1| - 0.0054 16.3 0.1 0.059 12.9 0.0 2.4 2 1 2 4 4 4 1 AAA domain AAA_22 PF13401.1 gi|452208476|ref|YP_007488598.1| - 0.0064 16.6 0.0 0.015 15.4 0.0 1.8 1 1 0 1 1 1 1 AAA domain IstB_IS21 PF01695.12 gi|452208476|ref|YP_007488598.1| - 0.0079 15.6 0.0 0.98 8.8 0.0 2.2 2 0 0 2 2 2 1 IstB-like ATP binding protein SMC_N PF02463.14 gi|452208476|ref|YP_007488598.1| - 0.0083 15.3 0.0 0.13 11.4 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA PF00004.24 gi|452208476|ref|YP_007488598.1| - 0.014 15.5 0.0 0.071 13.3 0.0 1.9 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) DUF258 PF03193.11 gi|452208476|ref|YP_007488598.1| - 0.015 14.5 0.0 0.024 13.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_33 PF13671.1 gi|452208476|ref|YP_007488598.1| - 0.027 14.3 0.0 0.047 13.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|452208476|ref|YP_007488598.1| - 0.028 13.7 0.1 0.071 12.5 0.0 1.7 1 1 0 1 1 1 0 AAA domain Miro PF08477.8 gi|452208476|ref|YP_007488598.1| - 0.076 13.5 0.0 0.13 12.7 0.0 1.3 1 0 0 1 1 1 0 Miro-like protein MMR_HSR1 PF01926.18 gi|452208476|ref|YP_007488598.1| - 0.078 12.9 0.0 0.12 12.2 0.0 1.6 1 1 0 1 1 1 0 50S ribosome-binding GTPase Toprim_3 PF13362.1 gi|452208476|ref|YP_007488598.1| - 0.078 13.2 0.1 7.4 6.8 0.1 2.5 1 1 0 2 2 2 0 Toprim domain cobW PF02492.14 gi|452208476|ref|YP_007488598.1| - 0.084 12.3 0.0 0.14 11.6 0.0 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain SbcCD_C PF13558.1 gi|452208476|ref|YP_007488598.1| - 0.09 12.7 0.0 0.4 10.6 0.0 2.0 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit Thymidylate_kin PF02223.12 gi|452208476|ref|YP_007488598.1| - 0.13 11.6 0.0 0.22 10.8 0.0 1.3 1 0 0 1 1 1 0 Thymidylate kinase MobB PF03205.9 gi|452208476|ref|YP_007488598.1| - 0.14 11.8 0.0 0.27 10.9 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B ABC2_membrane PF01061.19 gi|452208477|ref|YP_007488599.1| - 4.7e-21 74.9 9.8 4.7e-21 74.9 6.8 1.3 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|452208477|ref|YP_007488599.1| - 8.1e-15 54.6 1.2 8.1e-15 54.6 0.8 2.0 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|452208477|ref|YP_007488599.1| - 1.3e-06 27.4 2.8 1.3e-06 27.4 2.0 1.9 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|452208477|ref|YP_007488599.1| - 4.1e-06 26.1 7.7 8.4e-06 25.1 5.3 1.6 1 1 0 1 1 1 1 ABC-2 family transporter protein DUF2074 PF09847.4 gi|452208477|ref|YP_007488599.1| - 0.00045 19.1 0.8 0.00059 18.7 0.5 1.1 1 0 0 1 1 1 1 Predicted permease (DUF2074) ABC2_membrane_5 PF13346.1 gi|452208477|ref|YP_007488599.1| - 0.017 14.3 1.4 2.4 7.3 1.3 2.4 1 1 1 2 2 2 0 ABC-2 family transporter protein DUF420 PF04238.7 gi|452208478|ref|YP_007488600.1| - 7.4e-38 129.5 6.8 7.4e-38 129.5 4.7 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF420) DUF2306 PF10067.4 gi|452208478|ref|YP_007488600.1| - 0.00022 21.2 1.0 0.00022 21.2 0.7 2.8 1 1 2 3 3 3 1 Predicted membrane protein (DUF2306) BPD_transp_1 PF00528.17 gi|452208478|ref|YP_007488600.1| - 0.03 13.8 0.2 0.03 13.8 0.2 2.4 2 1 0 3 3 3 0 Binding-protein-dependent transport system inner membrane component DUF1240 PF06836.7 gi|452208478|ref|YP_007488600.1| - 0.05 13.8 2.0 0.19 11.9 0.1 2.3 2 1 1 3 3 3 0 Protein of unknown function (DUF1240) Frag1 PF10277.4 gi|452208478|ref|YP_007488600.1| - 0.083 12.3 2.9 0.17 11.3 2.0 1.5 1 1 0 1 1 1 0 Frag1/DRAM/Sfk1 family Cytochrom_B561 PF03188.11 gi|452208478|ref|YP_007488600.1| - 0.1 12.4 8.0 0.13 12.0 0.8 2.3 2 0 0 2 2 2 0 Eukaryotic cytochrome b561 DUF751 PF05421.6 gi|452208478|ref|YP_007488600.1| - 2.3 8.5 7.8 1 9.7 0.1 3.3 3 1 1 4 4 4 0 Protein of unknown function (DUF751) DUF4131 PF13567.1 gi|452208478|ref|YP_007488600.1| - 2.7 7.3 9.9 0.52 9.7 0.1 2.5 1 1 2 3 3 3 0 Domain of unknown function (DUF4131) 5-FTHF_cyc-lig PF01812.15 gi|452208479|ref|YP_007488601.1| - 1.1e-24 87.1 0.0 1.4e-24 86.9 0.0 1.1 1 0 0 1 1 1 1 5-formyltetrahydrofolate cyclo-ligase family DUF111 PF01969.12 gi|452208481|ref|YP_007488603.1| - 5.7e-127 423.6 5.6 6.7e-127 423.4 3.9 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF111 Gln-synt_C PF00120.19 gi|452208482|ref|YP_007488604.1| - 1.4e-103 345.5 0.0 1.8e-103 345.2 0.0 1.1 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.14 gi|452208482|ref|YP_007488604.1| - 7e-30 102.4 0.1 1.7e-29 101.2 0.0 1.7 1 0 0 1 1 1 1 Glutamine synthetase, beta-Grasp domain HTH_24 PF13412.1 gi|452208483|ref|YP_007488605.1| - 4.3e-12 45.2 0.2 8.6e-12 44.2 0.2 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding AsnC_trans_reg PF01037.16 gi|452208483|ref|YP_007488605.1| - 1.2e-11 44.1 0.1 1.8e-11 43.5 0.1 1.3 1 0 0 1 1 1 1 AsnC family HTH_AsnC-type PF13404.1 gi|452208483|ref|YP_007488605.1| - 5.9e-09 35.3 0.1 9.7e-09 34.6 0.1 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_5 PF01022.15 gi|452208483|ref|YP_007488605.1| - 2.6e-06 26.9 0.1 4.2e-06 26.3 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_11 PF08279.7 gi|452208483|ref|YP_007488605.1| - 2.7e-06 26.9 0.0 5.4e-06 25.9 0.0 1.5 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.2 gi|452208483|ref|YP_007488605.1| - 9.7e-06 25.3 0.0 2.4e-05 24.0 0.0 1.6 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_DeoR PF08220.7 gi|452208483|ref|YP_007488605.1| - 9.5e-05 21.8 0.1 0.00027 20.3 0.0 1.7 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain TrmB PF01978.14 gi|452208483|ref|YP_007488605.1| - 0.00042 19.9 0.1 0.0008 19.0 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_28 PF13518.1 gi|452208483|ref|YP_007488605.1| - 0.0021 18.0 0.0 0.004 17.1 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.17 gi|452208483|ref|YP_007488605.1| - 0.0023 17.5 0.0 0.0069 16.0 0.0 1.8 2 0 0 2 2 2 1 MarR family GntR PF00392.16 gi|452208483|ref|YP_007488605.1| - 0.0041 16.5 0.1 0.0098 15.3 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_36 PF13730.1 gi|452208483|ref|YP_007488605.1| - 0.009 16.1 0.0 0.016 15.3 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Mga PF05043.8 gi|452208483|ref|YP_007488605.1| - 0.017 15.3 0.0 0.12 12.7 0.0 2.0 2 0 0 2 2 2 0 Mga helix-turn-helix domain HTH_IclR PF09339.5 gi|452208483|ref|YP_007488605.1| - 0.02 14.5 0.0 0.034 13.7 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_10 PF04967.7 gi|452208483|ref|YP_007488605.1| - 0.021 14.3 0.0 0.045 13.3 0.0 1.5 1 0 0 1 1 1 0 HTH DNA binding domain HTH_38 PF13936.1 gi|452208483|ref|YP_007488605.1| - 0.041 13.4 0.0 0.075 12.5 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Pneumo_matrix PF03393.11 gi|452208483|ref|YP_007488605.1| - 0.044 12.7 0.0 0.053 12.4 0.0 1.1 1 0 0 1 1 1 0 Pneumovirus matrix protein HTH_23 PF13384.1 gi|452208483|ref|YP_007488605.1| - 0.056 13.1 0.0 0.11 12.1 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain HTH_34 PF13601.1 gi|452208483|ref|YP_007488605.1| - 0.062 13.3 0.0 0.13 12.3 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_27 PF13463.1 gi|452208483|ref|YP_007488605.1| - 0.064 13.5 0.1 1.7 9.0 0.0 2.5 2 1 0 2 2 2 0 Winged helix DNA-binding domain Fe_dep_repress PF01325.14 gi|452208483|ref|YP_007488605.1| - 0.09 12.7 0.0 0.31 11.0 0.0 1.8 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain GerE PF00196.14 gi|452208483|ref|YP_007488605.1| - 0.092 12.0 0.0 0.2 11.0 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family HTH_29 PF13551.1 gi|452208483|ref|YP_007488605.1| - 0.13 12.4 0.0 0.31 11.2 0.0 1.6 2 0 0 2 2 1 0 Winged helix-turn helix MarR_2 PF12802.2 gi|452208483|ref|YP_007488605.1| - 0.13 11.9 0.0 0.33 10.6 0.0 1.6 2 0 0 2 2 2 0 MarR family VIT1 PF01988.14 gi|452208484|ref|YP_007488606.1| - 1.1 8.7 6.6 1.4 8.3 4.6 1.1 1 0 0 1 1 1 0 VIT family GATase PF00117.23 gi|452208485|ref|YP_007488607.1| - 8.7e-33 113.3 0.0 9.9e-33 113.2 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.9 gi|452208485|ref|YP_007488607.1| - 2.7e-08 33.5 0.1 8.9e-08 31.8 0.1 1.9 1 1 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain SNO PF01174.14 gi|452208485|ref|YP_007488607.1| - 1.5e-07 31.2 0.0 8.1e-07 28.8 0.0 1.8 1 1 0 1 1 1 1 SNO glutamine amidotransferase family Peptidase_C26 PF07722.8 gi|452208485|ref|YP_007488607.1| - 1.9e-05 24.2 0.5 0.013 14.9 0.1 2.4 2 1 0 2 2 2 2 Peptidase C26 DJ-1_PfpI PF01965.19 gi|452208485|ref|YP_007488607.1| - 0.00013 21.3 0.0 0.0002 20.8 0.0 1.3 1 0 0 1 1 1 1 DJ-1/PfpI family UDG PF03167.14 gi|452208487|ref|YP_007488609.1| - 7.3e-37 126.1 0.0 9.2e-37 125.8 0.0 1.0 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily FAST_1 PF06743.10 gi|452208487|ref|YP_007488609.1| - 0.12 12.1 0.0 11 5.8 0.0 2.2 2 0 0 2 2 2 0 FAST kinase-like protein, subdomain 1 DUF99 PF01949.11 gi|452208488|ref|YP_007488610.1| - 1.2e-44 151.6 0.0 1.4e-44 151.4 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF99 HATPase_c PF02518.21 gi|452208490|ref|YP_007488612.1| - 4.7e-13 48.8 0.0 1.1e-12 47.6 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF_3 PF13492.1 gi|452208490|ref|YP_007488612.1| - 3.5e-09 36.8 0.5 8e-05 22.7 0.0 3.2 2 1 0 2 2 2 2 GAF domain GAF_2 PF13185.1 gi|452208490|ref|YP_007488612.1| - 1.8e-07 31.7 4.4 0.00046 20.6 0.0 2.9 2 0 0 2 2 2 2 GAF domain HATPase_c_2 PF13581.1 gi|452208490|ref|YP_007488612.1| - 3.5e-06 26.8 1.1 1e-05 25.3 0.0 2.4 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain PAS_8 PF13188.1 gi|452208490|ref|YP_007488612.1| - 1.2e-05 24.9 0.0 4.7e-05 23.0 0.0 2.0 1 0 0 1 1 1 1 PAS domain PAS_9 PF13426.1 gi|452208490|ref|YP_007488612.1| - 2e-05 24.9 0.0 0.0001 22.6 0.0 2.3 3 0 0 3 3 3 1 PAS domain HisKA PF00512.20 gi|452208490|ref|YP_007488612.1| - 3.1e-05 23.8 1.3 0.00012 21.9 0.9 2.1 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS PF00989.19 gi|452208490|ref|YP_007488612.1| - 0.00034 20.3 0.0 0.001 18.8 0.0 1.9 1 0 0 1 1 1 1 PAS fold HATPase_c_3 PF13589.1 gi|452208490|ref|YP_007488612.1| - 0.013 15.1 0.1 0.026 14.1 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.5 gi|452208490|ref|YP_007488612.1| - 0.018 15.0 0.2 0.018 15.0 0.2 3.3 3 0 0 3 3 3 0 PAS fold Lactamase_B PF00753.22 gi|452208491|ref|YP_007488613.1| - 7.1e-20 71.4 9.1 9.6e-20 71.0 6.3 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|452208491|ref|YP_007488613.1| - 0.00017 21.2 1.9 0.00022 20.8 1.3 1.5 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|452208491|ref|YP_007488613.1| - 0.00058 19.5 2.4 0.0091 15.7 1.6 2.1 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Radical_SAM PF04055.16 gi|452208491|ref|YP_007488613.1| - 0.14 12.3 0.0 0.3 11.2 0.0 1.4 1 1 0 1 1 1 0 Radical SAM superfamily DsbD PF02683.10 gi|452208492|ref|YP_007488614.1| - 8.6e-13 48.3 8.0 1.5e-12 47.5 5.5 1.4 1 1 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region DsbD_2 PF13386.1 gi|452208492|ref|YP_007488614.1| - 0.061 13.0 21.2 0.35 10.5 14.5 2.1 1 1 0 1 1 1 0 Cytochrome C biogenesis protein transmembrane region Thioredoxin PF00085.15 gi|452208493|ref|YP_007488615.1| - 0.031 13.9 0.0 0.048 13.3 0.0 1.2 1 0 0 1 1 1 0 Thioredoxin DoxX PF07681.7 gi|452208494|ref|YP_007488616.1| - 1.6e-08 34.8 6.4 1.6e-08 34.8 4.4 3.5 2 2 0 2 2 2 1 DoxX DoxD PF04173.8 gi|452208494|ref|YP_007488616.1| - 0.066 12.8 7.5 2.7 7.6 0.1 3.6 4 0 0 4 4 4 0 TQO small subunit DoxD Ribosomal_S10 PF00338.17 gi|452208495|ref|YP_007488617.1| - 3.7e-28 97.2 0.0 4e-28 97.1 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e GTP_EFTU PF00009.22 gi|452208496|ref|YP_007488618.1| - 1.8e-58 197.1 0.0 2.5e-58 196.6 0.0 1.1 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.12 gi|452208496|ref|YP_007488618.1| - 2.7e-31 107.6 0.1 9.9e-31 105.8 0.0 2.0 2 0 0 2 2 2 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.20 gi|452208496|ref|YP_007488618.1| - 2e-17 63.0 3.4 8.6e-17 61.0 1.0 2.5 2 0 0 2 2 2 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|452208496|ref|YP_007488618.1| - 2.1e-07 30.8 0.0 4.2e-07 29.9 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase Miro PF08477.8 gi|452208496|ref|YP_007488618.1| - 2.3e-05 24.8 0.2 0.0015 19.0 0.0 2.9 2 1 0 2 2 2 1 Miro-like protein Gtr1_RagA PF04670.7 gi|452208496|ref|YP_007488618.1| - 2.9e-05 23.3 0.1 0.041 13.0 0.0 2.3 2 0 0 2 2 2 2 Gtr1/RagA G protein conserved region GTP_EFTU_D4 PF14578.1 gi|452208496|ref|YP_007488618.1| - 7.6e-05 22.2 0.1 0.00025 20.6 0.1 1.8 1 0 0 1 1 1 1 Elongation factor Tu domain 4 Dynamin_N PF00350.18 gi|452208496|ref|YP_007488618.1| - 0.002 17.9 0.1 1.8 8.3 0.0 2.4 1 1 1 2 2 2 2 Dynamin family Septin PF00735.13 gi|452208496|ref|YP_007488618.1| - 0.0049 15.9 0.0 0.0097 14.9 0.0 1.4 1 0 0 1 1 1 1 Septin FeoB_N PF02421.13 gi|452208496|ref|YP_007488618.1| - 0.0083 15.4 0.7 0.12 11.6 0.3 2.7 2 1 0 2 2 2 1 Ferrous iron transport protein B ATP_bind_1 PF03029.12 gi|452208496|ref|YP_007488618.1| - 0.037 13.5 2.0 0.38 10.2 0.5 2.4 2 1 0 2 2 2 0 Conserved hypothetical ATP binding protein SRPRB PF09439.5 gi|452208496|ref|YP_007488618.1| - 0.048 12.8 0.0 0.31 10.2 0.0 2.1 1 1 0 2 2 2 0 Signal recognition particle receptor beta subunit Homoserine_dh PF00742.14 gi|452208497|ref|YP_007488619.1| - 4.2e-49 166.6 0.1 5.7e-49 166.1 0.1 1.2 1 0 0 1 1 1 1 Homoserine dehydrogenase NAD_binding_3 PF03447.11 gi|452208497|ref|YP_007488619.1| - 1.9e-06 28.2 0.1 3.7e-06 27.3 0.1 1.5 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain ELFV_dehydrog PF00208.16 gi|452208497|ref|YP_007488619.1| - 9.5e-06 25.3 0.1 1.7e-05 24.5 0.0 1.5 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase GFO_IDH_MocA PF01408.17 gi|452208497|ref|YP_007488619.1| - 0.056 13.9 0.0 0.098 13.1 0.0 1.4 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold 2-Hacid_dh_C PF02826.14 gi|452208497|ref|YP_007488619.1| - 0.098 11.8 0.1 0.16 11.1 0.0 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ApbA PF02558.11 gi|452208497|ref|YP_007488619.1| - 0.11 11.9 0.0 0.16 11.3 0.0 1.3 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA ACT PF01842.20 gi|452208498|ref|YP_007488620.1| - 4.7e-05 22.7 0.1 0.0022 17.4 0.0 2.8 3 0 0 3 3 3 1 ACT domain Arg_repressor PF01316.16 gi|452208498|ref|YP_007488620.1| - 0.14 11.6 0.0 0.26 10.8 0.0 1.3 1 0 0 1 1 1 0 Arginine repressor, DNA binding domain GTP_EFTU PF00009.22 gi|452208499|ref|YP_007488621.1| - 3.8e-61 205.7 0.4 6.1e-61 205.1 0.3 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_IV PF03764.13 gi|452208499|ref|YP_007488621.1| - 4.3e-26 90.8 0.0 1.2e-25 89.3 0.0 1.8 1 0 0 1 1 1 1 Elongation factor G, domain IV EFG_C PF00679.19 gi|452208499|ref|YP_007488621.1| - 4.9e-24 84.0 0.1 1.6e-22 79.1 0.0 3.1 3 0 0 3 3 3 1 Elongation factor G C-terminus EFG_II PF14492.1 gi|452208499|ref|YP_007488621.1| - 9.8e-23 79.7 0.5 9.8e-23 79.7 0.3 2.1 2 0 0 2 2 2 1 Elongation Factor G, domain II GTP_EFTU_D2 PF03144.20 gi|452208499|ref|YP_007488621.1| - 3.3e-15 55.9 2.9 9.2e-15 54.5 1.3 2.4 2 0 0 2 2 2 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|452208499|ref|YP_007488621.1| - 3.2e-05 23.8 0.0 8e-05 22.5 0.0 1.7 1 0 0 1 1 1 1 50S ribosome-binding GTPase SRPRB PF09439.5 gi|452208499|ref|YP_007488621.1| - 0.058 12.6 0.2 0.17 11.0 0.1 1.8 1 1 0 1 1 1 0 Signal recognition particle receptor beta subunit Ras PF00071.17 gi|452208499|ref|YP_007488621.1| - 0.06 12.7 0.0 0.17 11.2 0.0 1.8 1 0 0 1 1 1 0 Ras family GSDH PF07995.6 gi|452208502|ref|YP_007488624.1| - 2e-77 260.4 0.1 2.6e-77 260.1 0.1 1.0 1 0 0 1 1 1 1 Glucose / Sorbosone dehydrogenase Ribosomal_S7 PF00177.16 gi|452208503|ref|YP_007488625.1| - 9.6e-36 122.5 0.9 1.1e-35 122.3 0.7 1.1 1 0 0 1 1 1 1 Ribosomal protein S7p/S5e Ribosom_S12_S23 PF00164.20 gi|452208504|ref|YP_007488626.1| - 8.9e-41 138.1 0.2 1e-40 137.9 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S12/S23 PadR PF03551.9 gi|452208505|ref|YP_007488627.1| - 2e-06 27.4 0.0 3.4e-06 26.7 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family KH_2 PF07650.12 gi|452208506|ref|YP_007488628.1| - 2.3e-09 36.6 0.0 3.6e-05 23.2 0.0 2.1 1 1 1 2 2 2 2 KH domain KH_5 PF13184.1 gi|452208506|ref|YP_007488628.1| - 4.6e-08 32.7 0.0 1.5e-07 31.1 0.0 1.8 2 0 0 2 2 2 1 NusA-like KH domain KH_4 PF13083.1 gi|452208506|ref|YP_007488628.1| - 0.0031 17.0 0.0 0.0083 15.7 0.0 1.7 2 0 0 2 2 2 1 KH domain KH_1 PF00013.24 gi|452208506|ref|YP_007488628.1| - 0.011 15.3 0.2 0.28 10.8 0.0 2.2 1 1 1 2 2 2 0 KH domain RNA_pol_Rpb1_5 PF04998.12 gi|452208507|ref|YP_007488629.1| - 1.1e-47 162.6 0.2 1.5e-47 162.2 0.1 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 RNA_pol_Rpb1_1 PF04997.7 gi|452208508|ref|YP_007488630.1| - 1.5e-80 271.0 0.0 2.4e-51 175.0 0.0 2.2 2 0 0 2 2 2 2 RNA polymerase Rpb1, domain 1 RNA_pol_Rpb1_2 PF00623.15 gi|452208508|ref|YP_007488630.1| - 5.8e-65 218.2 0.1 1e-64 217.5 0.1 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 2 RNA_pol_Rpb1_4 PF05000.12 gi|452208508|ref|YP_007488630.1| - 5e-33 113.0 0.0 1.1e-32 111.9 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 4 RNA_pol_Rpb1_5 PF04998.12 gi|452208508|ref|YP_007488630.1| - 4.6e-29 101.5 0.0 9.1e-29 100.5 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 RNA_pol_Rpb1_3 PF04983.13 gi|452208508|ref|YP_007488630.1| - 3.1e-27 95.2 0.0 5.1e-27 94.5 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 3 RNA_pol_Rpb2_6 PF00562.23 gi|452208509|ref|YP_007488631.1| - 2.5e-123 411.6 0.0 3.1e-123 411.3 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 6 RNA_pol_Rpb2_7 PF04560.15 gi|452208509|ref|YP_007488631.1| - 1.6e-29 101.9 0.2 3e-29 101.1 0.1 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 7 RNA_pol_Rpb2_4 PF04566.8 gi|452208509|ref|YP_007488631.1| - 8.2e-24 83.1 1.8 1.9e-23 82.0 1.3 1.7 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 4 RNA_pol_Rpb2_5 PF04567.12 gi|452208509|ref|YP_007488631.1| - 6.6e-12 45.2 2.0 1.4e-11 44.1 1.4 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 5 DZR PF12773.2 gi|452208509|ref|YP_007488631.1| - 0.011 15.5 0.7 0.02 14.7 0.5 1.3 1 0 0 1 1 1 0 Double zinc ribbon OrfB_Zn_ribbon PF07282.6 gi|452208509|ref|YP_007488631.1| - 0.1 12.2 1.3 0.21 11.2 0.9 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Auto_anti-p27 PF06677.7 gi|452208509|ref|YP_007488631.1| - 0.15 11.8 0.7 0.29 10.9 0.5 1.4 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-NADH-PPase PF09297.6 gi|452208509|ref|YP_007488631.1| - 0.22 11.0 1.5 0.53 9.8 1.1 1.7 1 0 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain RNA_pol_Rpb2_1 PF04563.10 gi|452208510|ref|YP_007488632.1| - 5.2e-54 182.2 0.0 6.2e-54 182.0 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase beta subunit RNA_pol_Rpb2_2 PF04561.9 gi|452208510|ref|YP_007488632.1| - 3.2e-26 91.8 0.0 5.6e-26 91.1 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 2 RNA_pol_Rpb2_3 PF04565.11 gi|452208510|ref|YP_007488632.1| - 4.2e-23 80.8 0.0 8.6e-23 79.8 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 3 RNA_pol_Rpb5_C PF01191.14 gi|452208511|ref|YP_007488633.1| - 1.8e-24 85.0 0.8 2e-24 84.9 0.6 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb5, C-terminal domain DUF3006 PF11213.3 gi|452208511|ref|YP_007488633.1| - 0.012 15.3 0.4 0.13 12.0 0.3 2.2 1 1 0 1 1 1 0 Protein of unknown function (DUF3006) PDT PF00800.13 gi|452208512|ref|YP_007488634.1| - 1.2e-48 165.0 0.0 1.5e-48 164.7 0.0 1.1 1 0 0 1 1 1 1 Prephenate dehydratase ACT PF01842.20 gi|452208512|ref|YP_007488634.1| - 8.6e-07 28.3 0.0 1e-05 24.8 0.0 2.3 2 0 0 2 2 2 1 ACT domain UvrB PF12344.3 gi|452208514|ref|YP_007488636.1| - 1.3e-20 72.6 0.7 1.3e-20 72.6 0.5 1.7 2 0 0 2 2 2 1 Ultra-violet resistance protein B Helicase_C PF00271.26 gi|452208514|ref|YP_007488636.1| - 6.5e-14 51.5 0.5 1.8e-13 50.1 0.0 2.1 2 0 0 2 2 2 1 Helicase conserved C-terminal domain UVR PF02151.14 gi|452208514|ref|YP_007488636.1| - 3e-10 39.2 8.1 3e-10 39.2 5.6 2.7 2 0 0 2 2 2 1 UvrB/uvrC motif ResIII PF04851.10 gi|452208514|ref|YP_007488636.1| - 3.2e-10 40.1 0.0 6e-09 35.9 0.0 2.4 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit AAA_19 PF13245.1 gi|452208514|ref|YP_007488636.1| - 0.00029 20.5 0.1 2.2 8.1 0.0 3.7 4 0 0 4 4 4 2 Part of AAA domain DEAD PF00270.24 gi|452208514|ref|YP_007488636.1| - 0.00037 20.0 0.0 0.0056 16.1 0.0 2.7 3 0 0 3 3 3 1 DEAD/DEAH box helicase DUF87 PF01935.12 gi|452208514|ref|YP_007488636.1| - 0.0013 18.5 3.0 0.0023 17.7 0.0 2.7 3 0 0 3 3 3 1 Domain of unknown function DUF87 UB2H PF14814.1 gi|452208514|ref|YP_007488636.1| - 0.0014 18.2 0.0 0.0066 16.1 0.0 2.2 1 1 0 1 1 1 1 Bifunctional transglycosylase second domain ABC_tran PF00005.22 gi|452208514|ref|YP_007488636.1| - 0.043 14.1 0.0 6.7 7.0 0.0 2.6 2 0 0 2 2 2 0 ABC transporter SUKH_5 PF14567.1 gi|452208515|ref|YP_007488637.1| - 0.15 11.5 0.2 0.24 10.8 0.1 1.3 1 0 0 1 1 1 0 SMI1-KNR4 cell-wall Abi PF02517.11 gi|452208516|ref|YP_007488638.1| - 2e-11 43.8 9.5 2e-11 43.8 6.6 2.0 3 0 0 3 3 3 1 CAAX protease self-immunity Lon_C PF05362.8 gi|452208517|ref|YP_007488639.1| - 3e-38 131.1 4.5 4.7e-38 130.5 3.1 1.3 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain AAA_32 PF13654.1 gi|452208517|ref|YP_007488639.1| - 8.9e-28 97.2 0.0 9.9e-20 70.6 0.0 2.2 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.16 gi|452208517|ref|YP_007488639.1| - 1e-15 57.4 0.1 2.5e-10 39.8 0.0 2.3 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.21 gi|452208517|ref|YP_007488639.1| - 3.5e-14 52.6 0.1 3.9e-08 32.9 0.0 2.4 2 0 0 2 2 2 2 Sigma-54 interaction domain MCM PF00493.18 gi|452208517|ref|YP_007488639.1| - 2.3e-10 39.7 1.9 0.041 12.6 0.1 3.3 3 0 0 3 3 3 3 MCM2/3/5 family ChlI PF13541.1 gi|452208517|ref|YP_007488639.1| - 9e-10 38.1 0.4 2.3e-09 36.8 0.3 1.7 1 0 0 1 1 1 1 Subunit ChlI of Mg-chelatase AAA_5 PF07728.9 gi|452208517|ref|YP_007488639.1| - 1.6e-09 37.5 0.0 0.00082 19.1 0.0 2.6 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA PF00004.24 gi|452208517|ref|YP_007488639.1| - 1.8e-06 28.1 0.0 0.036 14.2 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.7 gi|452208517|ref|YP_007488639.1| - 1.3e-05 24.4 0.1 0.0028 16.7 0.0 2.3 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus Sigma54_activ_2 PF14532.1 gi|452208517|ref|YP_007488639.1| - 6e-05 23.1 0.0 0.13 12.2 0.0 2.4 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_22 PF13401.1 gi|452208517|ref|YP_007488639.1| - 0.0002 21.4 0.0 0.011 15.8 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_3 PF07726.6 gi|452208517|ref|YP_007488639.1| - 0.00047 19.7 0.2 0.62 9.6 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) TIP49 PF06068.8 gi|452208517|ref|YP_007488639.1| - 0.00063 18.5 2.4 0.051 12.2 0.0 2.8 4 0 0 4 4 4 1 TIP49 C-terminus T2SE PF00437.15 gi|452208517|ref|YP_007488639.1| - 0.0017 17.2 0.0 0.045 12.6 0.0 2.5 2 0 0 2 2 2 1 Type II/IV secretion system protein AAA_33 PF13671.1 gi|452208517|ref|YP_007488639.1| - 0.0027 17.5 0.1 0.035 13.9 0.0 2.6 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.1 gi|452208517|ref|YP_007488639.1| - 0.0029 17.2 0.0 0.05 13.1 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|452208517|ref|YP_007488639.1| - 0.0038 17.5 0.1 0.022 15.0 0.0 2.4 2 0 0 2 2 1 1 AAA domain PhoH PF02562.11 gi|452208517|ref|YP_007488639.1| - 0.004 16.3 0.0 0.0094 15.2 0.0 1.6 1 0 0 1 1 1 1 PhoH-like protein AAA_19 PF13245.1 gi|452208517|ref|YP_007488639.1| - 0.0042 16.8 0.0 0.015 15.0 0.0 2.0 1 0 0 1 1 1 1 Part of AAA domain AAA_PrkA PF08298.6 gi|452208517|ref|YP_007488639.1| - 0.0076 14.9 0.0 0.26 9.9 0.0 2.2 2 0 0 2 2 2 1 PrkA AAA domain DUF815 PF05673.8 gi|452208517|ref|YP_007488639.1| - 0.012 14.5 0.0 0.025 13.5 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF815) NACHT PF05729.7 gi|452208517|ref|YP_007488639.1| - 0.013 15.2 0.0 0.025 14.2 0.0 1.5 1 0 0 1 1 1 0 NACHT domain Zeta_toxin PF06414.7 gi|452208517|ref|YP_007488639.1| - 0.016 14.3 0.0 0.039 13.0 0.0 1.7 1 0 0 1 1 1 0 Zeta toxin ABC_tran PF00005.22 gi|452208517|ref|YP_007488639.1| - 0.021 15.1 0.0 0.062 13.5 0.0 1.8 1 0 0 1 1 1 0 ABC transporter IstB_IS21 PF01695.12 gi|452208517|ref|YP_007488639.1| - 0.029 13.7 0.0 0.06 12.7 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein TrwB_AAD_bind PF10412.4 gi|452208517|ref|YP_007488639.1| - 0.041 12.5 0.0 0.067 11.8 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_17 PF13207.1 gi|452208517|ref|YP_007488639.1| - 0.15 12.8 1.2 0.92 10.3 0.0 2.7 2 1 1 3 3 3 0 AAA domain CTP_transf_2 PF01467.21 gi|452208518|ref|YP_007488640.1| - 7.8e-17 61.7 0.1 9.9e-17 61.4 0.0 1.2 1 0 0 1 1 1 1 Cytidylyltransferase SAM_adeno_trans PF01887.11 gi|452208519|ref|YP_007488641.1| - 2.2e-73 246.4 0.0 2.6e-73 246.2 0.0 1.0 1 0 0 1 1 1 1 S-adenosyl-l-methionine hydroxide adenosyltransferase AAA_19 PF13245.1 gi|452208519|ref|YP_007488641.1| - 0.16 11.7 1.9 0.27 11.0 0.2 2.2 3 0 0 3 3 3 0 Part of AAA domain UPF0020 PF01170.13 gi|452208521|ref|YP_007488643.1| - 1.6e-28 99.5 0.0 2.4e-28 98.9 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 THUMP PF02926.12 gi|452208521|ref|YP_007488643.1| - 4.9e-13 49.1 0.0 8.9e-13 48.3 0.0 1.4 1 0 0 1 1 1 1 THUMP domain Methyltransf_26 PF13659.1 gi|452208521|ref|YP_007488643.1| - 8.8e-09 35.4 1.3 5.9e-08 32.7 0.3 2.2 2 0 0 2 2 2 1 Methyltransferase domain Gate PF07670.9 gi|452208522|ref|YP_007488644.1| - 1.2e-06 28.3 11.2 0.0012 18.6 1.5 2.7 2 1 1 3 3 3 2 Nucleoside recognition P5CR_dimer PF14748.1 gi|452208523|ref|YP_007488645.1| - 2.3e-35 120.8 0.3 2.3e-35 120.8 0.2 2.5 3 1 0 3 3 3 1 Pyrroline-5-carboxylate reductase dimerisation F420_oxidored PF03807.12 gi|452208523|ref|YP_007488645.1| - 3.9e-16 59.2 1.3 1.2e-15 57.7 0.6 2.0 2 0 0 2 2 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.10 gi|452208523|ref|YP_007488645.1| - 1.1e-06 28.5 1.1 3.6e-06 26.9 0.3 2.1 1 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase PDH PF02153.12 gi|452208523|ref|YP_007488645.1| - 3e-05 23.0 0.2 0.0089 14.9 0.1 2.1 2 0 0 2 2 2 2 Prephenate dehydrogenase 3HCDH_N PF02737.13 gi|452208523|ref|YP_007488645.1| - 0.00069 19.3 2.3 0.0018 17.9 1.1 2.1 1 1 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ThiF PF00899.16 gi|452208523|ref|YP_007488645.1| - 0.0011 18.8 4.8 0.0057 16.4 3.3 2.2 1 1 0 1 1 1 1 ThiF family TrkA_N PF02254.13 gi|452208523|ref|YP_007488645.1| - 0.0012 18.8 0.5 0.0041 17.1 0.4 2.0 1 1 0 1 1 1 1 TrkA-N domain NAD_Gly3P_dh_N PF01210.18 gi|452208523|ref|YP_007488645.1| - 0.0022 17.7 4.0 0.12 12.0 2.8 2.5 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus IlvN PF07991.7 gi|452208523|ref|YP_007488645.1| - 0.0041 16.5 0.5 0.0068 15.7 0.3 1.5 1 1 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain Methyltransf_11 PF08241.7 gi|452208523|ref|YP_007488645.1| - 0.0044 17.4 0.1 0.012 16.0 0.1 1.7 1 0 0 1 1 1 1 Methyltransferase domain CHAD PF05235.9 gi|452208523|ref|YP_007488645.1| - 0.025 14.1 1.0 0.034 13.7 0.7 1.2 1 0 0 1 1 1 0 CHAD domain Methyltransf_26 PF13659.1 gi|452208523|ref|YP_007488645.1| - 0.031 14.3 6.0 0.058 13.4 4.2 1.8 1 1 0 1 1 1 0 Methyltransferase domain 2-Hacid_dh_C PF02826.14 gi|452208523|ref|YP_007488645.1| - 0.035 13.2 0.1 0.06 12.5 0.1 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Semialdhyde_dh PF01118.19 gi|452208523|ref|YP_007488645.1| - 0.036 14.3 2.0 0.097 12.9 1.3 2.0 1 1 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain ApbA PF02558.11 gi|452208523|ref|YP_007488645.1| - 0.041 13.3 2.3 0.13 11.6 1.6 1.8 1 1 0 1 1 1 0 Ketopantoate reductase PanE/ApbA CoA_binding_2 PF13380.1 gi|452208523|ref|YP_007488645.1| - 0.047 13.8 0.4 0.11 12.6 0.3 1.8 1 1 0 1 1 1 0 CoA binding domain UDPG_MGDP_dh_N PF03721.9 gi|452208523|ref|YP_007488645.1| - 0.081 12.3 0.1 0.19 11.1 0.1 1.6 1 1 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Saccharop_dh PF03435.13 gi|452208523|ref|YP_007488645.1| - 0.083 11.8 0.5 0.14 11.1 0.3 1.4 1 0 0 1 1 1 0 Saccharopine dehydrogenase Methyltransf_18 PF12847.2 gi|452208523|ref|YP_007488645.1| - 0.084 13.4 1.3 0.22 12.1 0.9 1.8 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_25 PF13649.1 gi|452208523|ref|YP_007488645.1| - 0.093 13.0 0.0 0.96 9.8 0.0 2.4 2 1 0 2 2 2 0 Methyltransferase domain GFO_IDH_MocA PF01408.17 gi|452208523|ref|YP_007488645.1| - 0.1 13.0 1.7 0.55 10.7 0.1 2.6 2 1 1 3 3 3 0 Oxidoreductase family, NAD-binding Rossmann fold Rossmann-like PF10727.4 gi|452208523|ref|YP_007488645.1| - 0.33 10.6 4.1 0.23 11.1 1.5 1.9 2 0 0 2 2 2 0 Rossmann-like domain AA_kinase PF00696.23 gi|452208524|ref|YP_007488646.1| - 2.5e-39 135.2 0.3 2.9e-39 135.0 0.2 1.0 1 0 0 1 1 1 1 Amino acid kinase family Aldedh PF00171.17 gi|452208525|ref|YP_007488647.1| - 5e-22 77.8 3.3 3.8e-18 65.0 0.6 2.1 2 0 0 2 2 2 2 Aldehyde dehydrogenase family DUF3080 PF11279.3 gi|452208525|ref|YP_007488647.1| - 0.082 12.0 0.3 0.19 10.8 0.1 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3080) DisA_N PF02457.11 gi|452208526|ref|YP_007488648.1| - 4.6e-05 22.5 0.0 0.00011 21.2 0.0 1.6 1 1 0 1 1 1 1 DisA bacterial checkpoint controller nucleotide-binding FtsJ PF01728.14 gi|452208527|ref|YP_007488649.1| - 6.1e-56 189.2 0.0 7.1e-56 189.0 0.0 1.1 1 0 0 1 1 1 1 FtsJ-like methyltransferase TRAM PF01938.15 gi|452208527|ref|YP_007488649.1| - 4.8e-15 55.0 1.7 8.3e-15 54.3 1.1 1.4 1 0 0 1 1 1 1 TRAM domain Methyltransf_23 PF13489.1 gi|452208527|ref|YP_007488649.1| - 0.00043 20.0 0.0 0.0013 18.5 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|452208527|ref|YP_007488649.1| - 0.0021 18.6 0.3 0.027 15.0 0.1 2.4 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|452208527|ref|YP_007488649.1| - 0.0031 17.1 0.0 0.016 14.8 0.0 2.0 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|452208527|ref|YP_007488649.1| - 0.0062 16.5 0.4 0.023 14.7 0.3 1.8 1 1 0 1 1 1 1 Methyltransferase domain NSP13 PF06460.7 gi|452208527|ref|YP_007488649.1| - 0.0085 14.9 0.0 0.011 14.6 0.0 1.1 1 0 0 1 1 1 1 Coronavirus NSP13 Antitoxin-MazE PF04014.13 gi|452208528|ref|YP_007488650.1| - 0.0025 17.4 0.2 0.0046 16.6 0.1 1.5 1 1 0 1 1 1 1 Antidote-toxin recognition MazE MraZ PF02381.13 gi|452208528|ref|YP_007488650.1| - 0.0085 15.8 0.0 0.017 14.8 0.0 1.5 1 0 0 1 1 1 1 MraZ protein PIN PF01850.16 gi|452208529|ref|YP_007488651.1| - 0.0069 16.7 1.3 0.0094 16.2 0.9 1.2 1 0 0 1 1 1 1 PIN domain SNF PF00209.13 gi|452208531|ref|YP_007488653.1| - 2.1e-55 188.1 32.3 1.1e-28 99.9 9.5 2.0 2 0 0 2 2 2 2 Sodium:neurotransmitter symporter family DUF165 PF02592.10 gi|452208532|ref|YP_007488654.1| - 6.2e-44 149.6 4.4 6.2e-44 149.6 3.0 1.6 2 0 0 2 2 2 1 Uncharacterized ACR, YhhQ family COG1738 RHH_1 PF01402.16 gi|452208533|ref|YP_007488655.1| - 0.0014 18.4 0.1 0.0025 17.6 0.0 1.5 1 1 0 1 1 1 1 Ribbon-helix-helix protein, copG family Asparaginase PF00710.15 gi|452208534|ref|YP_007488656.1| - 1.3e-87 293.6 0.8 1.6e-87 293.3 0.5 1.0 1 0 0 1 1 1 1 Asparaginase DUF1952 PF09189.5 gi|452208536|ref|YP_007488658.1| - 0.00052 19.6 0.5 0.00062 19.4 0.4 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1952) ThiS PF02597.15 gi|452208537|ref|YP_007488659.1| - 8.2e-17 61.4 0.1 1e-16 61.1 0.1 1.1 1 0 0 1 1 1 1 ThiS family GIT_SHD PF08518.6 gi|452208537|ref|YP_007488659.1| - 0.065 12.6 0.1 0.11 11.9 0.0 1.4 1 0 0 1 1 1 0 Spa2 homology domain (SHD) of GIT PilJ PF13675.1 gi|452208538|ref|YP_007488660.1| - 0.13 12.5 0.5 5.8 7.2 0.0 2.0 1 1 1 2 2 2 0 Type IV pili methyl-accepting chemotaxis transducer N-term TGT_C2 PF14810.1 gi|452208539|ref|YP_007488661.1| - 9.7e-17 60.5 0.0 2.3e-16 59.4 0.0 1.6 1 0 0 1 1 1 1 Patch-forming domain C2 of tRNA-guanine transglycosylase TGT PF01702.13 gi|452208539|ref|YP_007488661.1| - 1.6e-13 50.5 0.0 2.7e-13 49.7 0.0 1.3 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase PUA PF01472.15 gi|452208539|ref|YP_007488661.1| - 6.8e-09 35.3 0.1 1.7e-08 34.0 0.1 1.7 1 0 0 1 1 1 1 PUA domain Helicase_C_2 PF13307.1 gi|452208540|ref|YP_007488662.1| - 2.8e-31 108.7 0.0 5.9e-31 107.6 0.0 1.5 1 0 0 1 1 1 1 Helicase C-terminal domain DEAD_2 PF06733.10 gi|452208540|ref|YP_007488662.1| - 9.2e-21 74.0 0.0 1.9e-20 72.9 0.0 1.5 1 1 0 1 1 1 1 DEAD_2 DEAD PF00270.24 gi|452208540|ref|YP_007488662.1| - 2.1e-08 33.8 0.1 9.3e-05 21.9 0.0 3.1 3 0 0 3 3 3 2 DEAD/DEAH box helicase ResIII PF04851.10 gi|452208540|ref|YP_007488662.1| - 8.2e-06 25.7 0.1 0.00039 20.3 0.0 2.2 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit Zot PF05707.7 gi|452208540|ref|YP_007488662.1| - 0.014 14.9 0.0 2.8 7.3 0.0 2.3 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) AAA_34 PF13872.1 gi|452208540|ref|YP_007488662.1| - 0.028 13.1 0.0 0.049 12.3 0.0 1.3 1 0 0 1 1 1 0 P-loop containing NTP hydrolase pore-1 AAA_30 PF13604.1 gi|452208540|ref|YP_007488662.1| - 0.047 13.2 0.6 0.089 12.3 0.1 1.6 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.1 gi|452208540|ref|YP_007488662.1| - 0.058 13.1 0.3 0.058 13.1 0.2 2.0 2 0 0 2 2 2 0 Part of AAA domain KaiC PF06745.8 gi|452208540|ref|YP_007488662.1| - 0.084 11.9 0.0 0.13 11.3 0.0 1.2 1 0 0 1 1 1 0 KaiC HNH PF01844.18 gi|452208541|ref|YP_007488663.1| - 0.032 14.0 0.6 0.032 14.0 0.4 2.6 3 1 0 3 3 3 0 HNH endonuclease Toxin_16 PF07945.6 gi|452208541|ref|YP_007488663.1| - 0.052 13.2 2.3 0.052 13.2 1.6 2.0 2 0 0 2 2 2 0 Janus-atracotoxin OrfB_Zn_ribbon PF07282.6 gi|452208541|ref|YP_007488663.1| - 0.37 10.4 2.2 13 5.4 0.0 2.8 3 0 0 3 3 3 0 Putative transposase DNA-binding domain zf-FPG_IleRS PF06827.9 gi|452208541|ref|YP_007488663.1| - 1.1 8.9 5.4 2.8 7.6 0.4 2.5 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS NUDIX PF00293.23 gi|452208542|ref|YP_007488664.1| - 8.7e-20 70.7 0.1 1.1e-19 70.3 0.0 1.1 1 0 0 1 1 1 1 NUDIX domain dUTPase PF00692.14 gi|452208544|ref|YP_007488666.1| - 5.6e-16 58.1 0.0 7.8e-16 57.7 0.0 1.2 1 0 0 1 1 1 1 dUTPase DCD PF06559.6 gi|452208544|ref|YP_007488666.1| - 1.7e-14 53.0 0.1 1e-12 47.1 0.0 2.3 1 1 0 1 1 1 1 2'-deoxycytidine 5'-triphosphate deaminase (DCD) Aldolase_2 PF10120.4 gi|452208545|ref|YP_007488667.1| - 2.6e-48 163.6 0.1 4e-48 163.0 0.1 1.3 1 0 0 1 1 1 1 Putative aldolase HTH_3 PF01381.17 gi|452208545|ref|YP_007488667.1| - 3.8e-07 29.8 0.1 1.2e-06 28.2 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix HTH_37 PF13744.1 gi|452208545|ref|YP_007488667.1| - 6.1e-05 22.7 0.0 0.00013 21.6 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4 PF04545.11 gi|452208545|ref|YP_007488667.1| - 0.0001 21.5 2.2 0.00077 18.7 0.0 2.8 3 0 0 3 3 3 1 Sigma-70, region 4 HTH_31 PF13560.1 gi|452208545|ref|YP_007488667.1| - 0.00028 21.0 0.9 0.00028 21.0 0.6 2.8 2 1 1 3 3 3 1 Helix-turn-helix domain HTH_26 PF13443.1 gi|452208545|ref|YP_007488667.1| - 0.0024 18.0 0.0 0.0046 17.1 0.0 1.4 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_23 PF13384.1 gi|452208545|ref|YP_007488667.1| - 0.0027 17.2 0.0 0.011 15.3 0.0 2.0 2 0 0 2 2 2 1 Homeodomain-like domain HTH_24 PF13412.1 gi|452208545|ref|YP_007488667.1| - 0.0044 16.3 0.0 0.012 14.9 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|452208545|ref|YP_007488667.1| - 0.008 15.8 3.4 0.0093 15.6 0.0 2.8 4 0 0 4 4 3 1 MarR family HTH_Tnp_ISL3 PF13542.1 gi|452208545|ref|YP_007488667.1| - 0.01 14.9 0.2 0.044 12.9 0.0 2.1 3 0 0 3 3 2 0 Helix-turn-helix domain of transposase family ISL3 HTH_38 PF13936.1 gi|452208545|ref|YP_007488667.1| - 0.01 15.3 0.1 0.022 14.3 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_19 PF12844.2 gi|452208545|ref|YP_007488667.1| - 0.016 15.2 0.0 0.034 14.1 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|452208545|ref|YP_007488667.1| - 0.021 14.2 0.1 0.069 12.6 0.1 1.9 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_5 PF01022.15 gi|452208545|ref|YP_007488667.1| - 0.025 14.2 0.0 0.085 12.5 0.0 1.9 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_17 PF12728.2 gi|452208545|ref|YP_007488667.1| - 0.03 14.5 0.0 0.07 13.3 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain P22_Cro PF14549.1 gi|452208545|ref|YP_007488667.1| - 0.032 13.9 0.0 0.086 12.5 0.0 1.7 1 0 0 1 1 1 0 DNA-binding transcriptional regulator Cro HTH_28 PF13518.1 gi|452208545|ref|YP_007488667.1| - 0.044 13.7 0.1 0.23 11.5 0.0 2.2 2 0 0 2 2 1 0 Helix-turn-helix domain HTH_Tnp_4 PF13613.1 gi|452208545|ref|YP_007488667.1| - 0.05 13.1 0.0 0.16 11.5 0.0 1.8 2 0 0 2 2 1 0 Helix-turn-helix of DDE superfamily endonuclease HTH_20 PF12840.2 gi|452208545|ref|YP_007488667.1| - 0.06 13.1 2.7 0.14 11.9 0.0 2.9 3 0 0 3 3 3 0 Helix-turn-helix domain HTH_1 PF00126.22 gi|452208545|ref|YP_007488667.1| - 0.071 12.8 2.3 0.2 11.4 0.0 2.8 3 0 0 3 3 2 0 Bacterial regulatory helix-turn-helix protein, lysR family KorB PF08535.5 gi|452208545|ref|YP_007488667.1| - 0.1 12.7 0.6 0.78 9.9 0.0 2.7 2 2 1 3 3 3 0 KorB domain Transglut_core PF01841.14 gi|452208545|ref|YP_007488667.1| - 0.12 12.5 0.1 0.29 11.3 0.1 1.6 1 0 0 1 1 1 0 Transglutaminase-like superfamily HTH_8 PF02954.14 gi|452208545|ref|YP_007488667.1| - 0.2 11.2 1.7 1.5 8.4 0.0 2.8 3 0 0 3 3 2 0 Bacterial regulatory protein, Fis family Thi4 PF01946.12 gi|452208547|ref|YP_007488669.1| - 1.2e-62 211.0 1.2 2.7e-50 170.6 0.2 2.1 1 1 0 2 2 2 2 Thi4 family FAD_oxidored PF12831.2 gi|452208547|ref|YP_007488669.1| - 3.7e-11 42.7 0.5 5.7e-11 42.1 0.3 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase DAO PF01266.19 gi|452208547|ref|YP_007488669.1| - 7.9e-11 41.4 0.9 1.7e-06 27.1 0.1 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|452208547|ref|YP_007488669.1| - 1.9e-10 40.3 0.0 3.7e-10 39.3 0.0 1.4 1 0 0 1 1 1 1 FAD binding domain FAD_binding_2 PF00890.19 gi|452208547|ref|YP_007488669.1| - 2.4e-10 39.8 2.9 1.5e-07 30.6 0.1 2.7 1 1 1 3 3 3 2 FAD binding domain HI0933_like PF03486.9 gi|452208547|ref|YP_007488669.1| - 2.4e-08 32.9 0.1 3.4e-08 32.3 0.1 1.2 1 0 0 1 1 1 1 HI0933-like protein NAD_binding_8 PF13450.1 gi|452208547|ref|YP_007488669.1| - 9.1e-08 32.0 0.1 2.1e-07 30.8 0.0 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.9 gi|452208547|ref|YP_007488669.1| - 2.4e-06 27.5 0.6 3.7e-06 26.9 0.1 1.7 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|452208547|ref|YP_007488669.1| - 2.6e-06 27.6 0.0 4e-06 27.0 0.0 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.7 gi|452208547|ref|YP_007488669.1| - 6.3e-05 22.0 0.1 0.017 14.0 0.0 2.1 2 0 0 2 2 2 2 Lycopene cyclase protein Pyr_redox PF00070.22 gi|452208547|ref|YP_007488669.1| - 8.3e-05 22.9 0.3 0.00021 21.6 0.2 1.8 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.9 gi|452208547|ref|YP_007488669.1| - 8.4e-05 21.3 0.1 0.021 13.4 0.0 2.1 2 0 0 2 2 2 2 Tryptophan halogenase NAD_binding_9 PF13454.1 gi|452208547|ref|YP_007488669.1| - 0.00047 19.9 0.3 0.002 17.9 0.1 2.0 2 0 0 2 2 2 1 FAD-NAD(P)-binding GIDA PF01134.17 gi|452208547|ref|YP_007488669.1| - 0.0011 17.9 0.1 0.0018 17.1 0.1 1.4 1 0 0 1 1 1 1 Glucose inhibited division protein A Amino_oxidase PF01593.19 gi|452208547|ref|YP_007488669.1| - 0.004 16.2 0.0 0.011 14.9 0.0 1.7 2 0 0 2 2 2 1 Flavin containing amine oxidoreductase NAD_binding_7 PF13241.1 gi|452208547|ref|YP_007488669.1| - 0.0052 17.0 0.0 0.013 15.7 0.0 1.7 1 1 0 1 1 1 1 Putative NAD(P)-binding Shikimate_DH PF01488.15 gi|452208547|ref|YP_007488669.1| - 0.043 13.9 0.0 0.27 11.3 0.0 2.0 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase TrkA_N PF02254.13 gi|452208547|ref|YP_007488669.1| - 0.1 12.5 0.3 0.44 10.5 0.0 2.1 2 0 0 2 2 2 0 TrkA-N domain Phos_pyr_kin PF08543.7 gi|452208549|ref|YP_007488671.1| - 3.3e-82 275.3 4.7 4.3e-82 275.0 3.2 1.1 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase PfkB PF00294.19 gi|452208549|ref|YP_007488671.1| - 2.1e-13 50.0 3.2 3.3e-13 49.4 2.2 1.2 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Aldolase_2 PF10120.4 gi|452208549|ref|YP_007488671.1| - 1.7e-08 34.0 0.0 7.6e-08 31.9 0.0 2.0 2 0 0 2 2 2 1 Putative aldolase Lantibiotic_a PF14867.1 gi|452208550|ref|YP_007488672.1| - 0.00012 21.2 5.5 8.3 5.7 0.1 4.3 4 0 0 4 4 4 4 Lantibiotic alpha MutS_V PF00488.16 gi|452208551|ref|YP_007488673.1| - 2.4e-94 315.1 0.0 3.8e-94 314.4 0.0 1.3 1 0 0 1 1 1 1 MutS domain V MutS_III PF05192.13 gi|452208551|ref|YP_007488673.1| - 3e-37 128.3 0.3 6.1e-37 127.4 0.2 1.5 1 0 0 1 1 1 1 MutS domain III MutS_I PF01624.15 gi|452208551|ref|YP_007488673.1| - 1.5e-24 86.1 0.0 6.6e-24 84.1 0.0 2.0 2 0 0 2 2 2 1 MutS domain I MutS_IV PF05190.13 gi|452208551|ref|YP_007488673.1| - 2.2e-19 69.3 0.8 4e-19 68.5 0.6 1.4 1 0 0 1 1 1 1 MutS family domain IV MutS_II PF05188.12 gi|452208551|ref|YP_007488673.1| - 1.3e-17 64.1 0.0 2.3e-17 63.3 0.0 1.5 1 0 0 1 1 1 1 MutS domain II AAA_29 PF13555.1 gi|452208551|ref|YP_007488673.1| - 0.0058 16.1 0.0 0.012 15.1 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_14 PF13173.1 gi|452208551|ref|YP_007488673.1| - 0.19 11.6 0.0 0.46 10.3 0.0 1.7 1 0 0 1 1 1 0 AAA domain MutL_C PF08676.6 gi|452208552|ref|YP_007488674.1| - 3.6e-34 117.4 0.0 5.3e-34 116.8 0.0 1.2 1 0 0 1 1 1 1 MutL C terminal dimerisation domain DNA_mis_repair PF01119.14 gi|452208552|ref|YP_007488674.1| - 1.4e-30 105.1 0.0 2.1e-30 104.6 0.0 1.2 1 0 0 1 1 1 1 DNA mismatch repair protein, C-terminal domain HATPase_c_3 PF13589.1 gi|452208552|ref|YP_007488674.1| - 5.7e-12 45.4 0.0 9.8e-12 44.7 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c PF02518.21 gi|452208552|ref|YP_007488674.1| - 7.1e-10 38.5 0.1 1.5e-09 37.5 0.1 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MatE PF01554.13 gi|452208553|ref|YP_007488675.1| - 6.6e-61 204.6 41.5 1e-35 122.7 10.8 2.6 3 0 0 3 3 3 2 MatE Polysacc_synt_C PF14667.1 gi|452208553|ref|YP_007488675.1| - 3.7e-07 30.0 10.1 3.7e-07 30.0 7.0 5.5 4 3 0 5 5 5 1 Polysaccharide biosynthesis C-terminal domain Dispanin PF04505.7 gi|452208553|ref|YP_007488675.1| - 0.18 11.3 3.6 0.31 10.6 0.9 2.6 2 0 0 2 2 2 0 Interferon-induced transmembrane protein DUF334 PF03904.8 gi|452208553|ref|YP_007488675.1| - 1.9 7.7 2.6 3.4 6.9 1.8 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF334) B5 PF03484.10 gi|452208554|ref|YP_007488676.1| - 1.5e-12 47.1 0.0 4.2e-08 32.9 0.1 3.1 3 0 0 3 3 3 2 tRNA synthetase B5 domain B3_4 PF03483.12 gi|452208554|ref|YP_007488676.1| - 1.7e-10 40.6 0.0 2.7e-10 39.9 0.0 1.3 1 0 0 1 1 1 1 B3/4 domain tRNA-synt_2d PF01409.15 gi|452208554|ref|YP_007488676.1| - 0.0028 16.9 0.0 0.004 16.3 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) tRNA-synt_2d PF01409.15 gi|452208555|ref|YP_007488677.1| - 6.5e-77 258.0 0.0 8.5e-77 257.6 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) MarR_2 PF12802.2 gi|452208555|ref|YP_007488677.1| - 3e-09 36.4 2.3 8.2e-07 28.5 0.2 2.8 2 0 0 2 2 2 2 MarR family MarR PF01047.17 gi|452208555|ref|YP_007488677.1| - 4.4e-08 32.7 0.0 0.0034 17.0 0.0 2.7 2 0 0 2 2 2 2 MarR family tRNA-synt_2 PF00152.15 gi|452208555|ref|YP_007488677.1| - 1.5e-05 23.9 0.8 0.0091 14.8 0.1 2.6 3 0 0 3 3 3 2 tRNA synthetases class II (D, K and N) HTH_27 PF13463.1 gi|452208555|ref|YP_007488677.1| - 0.00033 20.9 3.6 0.41 11.0 0.1 2.9 3 0 0 3 3 3 2 Winged helix DNA-binding domain TrmB PF01978.14 gi|452208555|ref|YP_007488677.1| - 0.0011 18.6 0.0 8 6.2 0.0 3.7 3 0 0 3 3 3 1 Sugar-specific transcriptional regulator TrmB LexA_DNA_bind PF01726.11 gi|452208555|ref|YP_007488677.1| - 0.019 14.5 0.0 10 5.7 0.0 2.9 3 0 0 3 3 3 0 LexA DNA binding domain HTH_24 PF13412.1 gi|452208555|ref|YP_007488677.1| - 0.03 13.7 0.0 0.17 11.3 0.0 2.2 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding Fe_dep_repress PF01325.14 gi|452208555|ref|YP_007488677.1| - 0.038 13.9 0.0 0.29 11.0 0.0 2.4 3 0 0 3 3 3 0 Iron dependent repressor, N-terminal DNA binding domain IRF-2BP1_2 PF11261.3 gi|452208557|ref|YP_007488679.1| - 0.13 11.7 0.0 0.18 11.3 0.0 1.2 1 0 0 1 1 1 0 Interferon regulatory factor 2-binding protein zinc finger PPE PF00823.14 gi|452208558|ref|YP_007488680.1| - 0.022 14.5 0.1 0.026 14.3 0.1 1.1 1 0 0 1 1 1 0 PPE family Response_reg PF00072.19 gi|452208560|ref|YP_007488682.1| - 3.8e-30 104.1 0.2 4.2e-30 104.0 0.2 1.0 1 0 0 1 1 1 1 Response regulator receiver domain Abhydrolase_3 PF07859.8 gi|452208561|ref|YP_007488683.1| - 3e-75 252.4 1.9 3.7e-75 252.1 1.3 1.1 1 0 0 1 1 1 1 alpha/beta hydrolase fold COesterase PF00135.23 gi|452208561|ref|YP_007488683.1| - 2.8e-13 49.4 0.1 6.1e-13 48.3 0.1 1.4 1 1 0 1 1 1 1 Carboxylesterase family Abhydrolase_5 PF12695.2 gi|452208561|ref|YP_007488683.1| - 2.8e-08 33.6 1.5 4.7e-08 32.8 1.0 1.4 1 1 0 1 1 1 1 Alpha/beta hydrolase family Peptidase_S9 PF00326.16 gi|452208561|ref|YP_007488683.1| - 0.00012 21.3 1.5 0.00014 21.1 0.3 1.8 2 1 0 2 2 2 1 Prolyl oligopeptidase family Thioesterase PF00975.15 gi|452208561|ref|YP_007488683.1| - 0.00024 21.4 0.1 0.00038 20.7 0.1 1.2 1 0 0 1 1 1 1 Thioesterase domain Chlorophyllase2 PF12740.2 gi|452208561|ref|YP_007488683.1| - 0.00037 19.4 0.0 0.00051 19.0 0.0 1.1 1 0 0 1 1 1 1 Chlorophyllase enzyme Chlorophyllase PF07224.6 gi|452208561|ref|YP_007488683.1| - 0.03 13.1 0.0 0.049 12.4 0.0 1.3 1 0 0 1 1 1 0 Chlorophyllase DUF2974 PF11187.3 gi|452208561|ref|YP_007488683.1| - 0.13 11.6 0.0 0.2 11.0 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2974) CbiA PF01656.18 gi|452208563|ref|YP_007488685.1| - 4.1e-24 85.0 0.2 4.8e-24 84.8 0.1 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|452208563|ref|YP_007488685.1| - 4.2e-08 33.2 0.0 5.7e-08 32.8 0.0 1.2 1 0 0 1 1 1 1 AAA domain Fer4_NifH PF00142.13 gi|452208563|ref|YP_007488685.1| - 1.3e-06 27.8 0.0 0.0028 16.8 0.0 2.1 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family MipZ PF09140.6 gi|452208563|ref|YP_007488685.1| - 5.7e-05 22.3 1.6 0.00047 19.3 1.1 1.9 1 1 0 1 1 1 1 ATPase MipZ ArsA_ATPase PF02374.10 gi|452208563|ref|YP_007488685.1| - 0.0013 17.8 0.7 0.0019 17.3 0.5 1.2 1 0 0 1 1 1 1 Anion-transporting ATPase VirC1 PF07015.6 gi|452208563|ref|YP_007488685.1| - 0.0033 16.5 0.4 0.0055 15.8 0.3 1.3 1 0 0 1 1 1 1 VirC1 protein AAA_25 PF13481.1 gi|452208563|ref|YP_007488685.1| - 0.0086 15.4 0.2 0.014 14.7 0.2 1.4 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.1 gi|452208563|ref|YP_007488685.1| - 0.0099 15.4 1.1 0.05 13.1 0.1 2.1 2 0 0 2 2 2 1 AAA domain PIF1 PF05970.9 gi|452208563|ref|YP_007488685.1| - 0.012 14.5 0.2 0.017 14.0 0.1 1.1 1 0 0 1 1 1 0 PIF1-like helicase AAA_26 PF13500.1 gi|452208563|ref|YP_007488685.1| - 0.04 13.5 0.3 0.2 11.2 0.0 2.1 2 0 0 2 2 2 0 AAA domain FtsK_SpoIIIE PF01580.13 gi|452208563|ref|YP_007488685.1| - 0.076 12.4 0.3 0.17 11.3 0.1 1.6 2 0 0 2 2 2 0 FtsK/SpoIIIE family AAA_17 PF13207.1 gi|452208563|ref|YP_007488685.1| - 0.13 13.0 0.1 0.34 11.7 0.0 1.7 1 1 0 1 1 1 0 AAA domain ATP_bind_3 PF01171.15 gi|452208566|ref|YP_007488688.1| - 5.2e-13 48.8 0.0 9.4e-13 48.0 0.0 1.5 1 1 0 1 1 1 1 PP-loop family tRNA_Me_trans PF03054.11 gi|452208566|ref|YP_007488688.1| - 1.5e-05 23.7 0.0 1.9e-05 23.3 0.0 1.1 1 0 0 1 1 1 1 tRNA methyl transferase PAPS_reduct PF01507.14 gi|452208566|ref|YP_007488688.1| - 5.3e-05 23.1 0.0 8.6e-05 22.4 0.0 1.3 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family NAD_synthase PF02540.12 gi|452208566|ref|YP_007488688.1| - 0.03 13.2 0.0 0.04 12.8 0.0 1.2 1 0 0 1 1 1 0 NAD synthase DUF2392 PF10288.4 gi|452208566|ref|YP_007488688.1| - 0.037 14.3 0.0 0.062 13.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2392) DZR PF12773.2 gi|452208566|ref|YP_007488688.1| - 6.1 6.7 9.8 4.2 7.2 1.3 3.1 3 0 0 3 3 3 0 Double zinc ribbon FtsZ_C PF12327.3 gi|452208567|ref|YP_007488689.1| - 3.5e-35 119.9 0.6 3.5e-35 119.9 0.4 2.8 2 1 1 3 3 3 1 FtsZ family, C-terminal domain Tubulin PF00091.20 gi|452208567|ref|YP_007488689.1| - 2.5e-33 115.7 2.3 1.3e-32 113.4 1.6 2.0 1 1 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain ThiF PF00899.16 gi|452208567|ref|YP_007488689.1| - 0.031 14.0 0.0 0.096 12.5 0.0 1.8 1 0 0 1 1 1 0 ThiF family RHH_1 PF01402.16 gi|452208568|ref|YP_007488690.1| - 2e-07 30.6 0.1 2.9e-07 30.0 0.0 1.3 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_2 PF03693.9 gi|452208568|ref|YP_007488690.1| - 0.01 15.9 0.1 0.012 15.8 0.0 1.1 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0156) CHASE3 PF05227.8 gi|452208568|ref|YP_007488690.1| - 0.079 12.6 1.9 0.086 12.5 1.3 1.0 1 0 0 1 1 1 0 CHASE3 domain zf-ribbon_3 PF13248.1 gi|452208569|ref|YP_007488691.1| - 5.9e-09 34.8 11.8 1.6e-05 23.9 2.3 2.3 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.2 gi|452208569|ref|YP_007488691.1| - 1.2e-08 34.6 9.4 2.5e-08 33.5 6.5 1.5 1 1 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|452208569|ref|YP_007488691.1| - 3.3e-07 29.5 13.1 0.00013 21.2 3.2 2.4 2 0 0 2 2 2 2 zinc-ribbon domain UPF0547 PF10571.4 gi|452208569|ref|YP_007488691.1| - 7e-05 22.4 7.5 0.0048 16.5 1.9 2.3 2 0 0 2 2 2 2 Uncharacterised protein family UPF0547 RHH_1 PF01402.16 gi|452208569|ref|YP_007488691.1| - 0.00016 21.3 4.9 0.023 14.5 0.0 3.3 3 0 0 3 3 3 1 Ribbon-helix-helix protein, copG family zf-DHHC PF01529.15 gi|452208569|ref|YP_007488691.1| - 0.03 13.7 0.0 0.054 12.8 0.0 1.6 2 0 0 2 2 2 0 DHHC palmitoyltransferase Nudix_N_2 PF14803.1 gi|452208569|ref|YP_007488691.1| - 0.078 12.6 12.5 4.5 7.0 1.9 3.8 3 1 0 3 3 3 0 Nudix N-terminal PolC_DP2 PF03833.8 gi|452208569|ref|YP_007488691.1| - 0.091 10.4 3.6 0.13 9.9 2.5 1.2 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 zf-NADH-PPase PF09297.6 gi|452208569|ref|YP_007488691.1| - 0.096 12.2 8.3 1.4 8.4 0.3 3.4 3 0 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain DUF2191 PF09957.4 gi|452208569|ref|YP_007488691.1| - 0.098 12.4 0.3 0.098 12.4 0.2 2.2 2 1 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2191) KdpC PF02669.10 gi|452208569|ref|YP_007488691.1| - 0.14 11.8 0.0 0.19 11.4 0.0 1.2 1 0 0 1 1 1 0 K+-transporting ATPase, c chain NOB1_Zn_bind PF08772.6 gi|452208569|ref|YP_007488691.1| - 0.25 11.1 12.3 1.4 8.7 3.7 2.4 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like Zn_Tnp_IS91 PF14319.1 gi|452208569|ref|YP_007488691.1| - 0.38 10.2 5.2 0.66 9.5 3.6 1.4 1 0 0 1 1 1 0 Transposase zinc-binding domain zf-C3HC4_3 PF13920.1 gi|452208569|ref|YP_007488691.1| - 0.47 10.1 9.0 4 7.1 6.2 2.1 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) TT_ORF2 PF02957.10 gi|452208569|ref|YP_007488691.1| - 0.5 11.0 0.1 0.5 11.0 0.1 2.9 2 1 1 3 3 3 0 TT viral ORF2 Auto_anti-p27 PF06677.7 gi|452208569|ref|YP_007488691.1| - 0.62 9.8 5.0 4 7.2 1.3 2.6 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-C2H2 PF00096.21 gi|452208569|ref|YP_007488691.1| - 0.71 10.3 5.4 49 4.5 0.0 3.4 3 0 0 3 3 3 0 Zinc finger, C2H2 type OrfB_Zn_ribbon PF07282.6 gi|452208569|ref|YP_007488691.1| - 1.9 8.1 12.9 1.1e+02 2.5 8.9 2.5 1 1 0 1 1 1 0 Putative transposase DNA-binding domain zinc-ribbons_6 PF07191.7 gi|452208569|ref|YP_007488691.1| - 2.6 7.8 10.2 0.68 9.7 4.0 2.0 1 1 1 2 2 2 0 zinc-ribbons Ribosomal_L32p PF01783.18 gi|452208569|ref|YP_007488691.1| - 3.6 7.8 6.8 3.5 7.8 2.3 2.5 2 1 0 2 2 2 0 Ribosomal L32p protein family zf-RING_2 PF13639.1 gi|452208569|ref|YP_007488691.1| - 6 6.7 9.8 9.6 6.1 6.8 1.3 1 0 0 1 1 1 0 Ring finger domain Desulfoferrod_N PF06397.7 gi|452208570|ref|YP_007488692.1| - 0.21 10.9 2.3 1.1 8.6 0.2 2.2 2 0 0 2 2 2 0 Desulfoferrodoxin, N-terminal domain DUF433 PF04255.9 gi|452208571|ref|YP_007488693.1| - 7.6e-06 25.2 0.1 1.1e-05 24.7 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF433) DUF4296 PF14129.1 gi|452208571|ref|YP_007488693.1| - 0.0037 17.3 0.0 0.0048 17.0 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4296) Glyco_trans_1_2 PF13524.1 gi|452208571|ref|YP_007488693.1| - 0.12 12.6 0.1 0.15 12.3 0.1 1.2 1 0 0 1 1 1 0 Glycosyl transferases group 1 AHSA1 PF08327.6 gi|452208572|ref|YP_007488694.1| - 0.0073 16.4 0.0 0.0081 16.2 0.0 1.1 1 0 0 1 1 1 1 Activator of Hsp90 ATPase homolog 1-like protein Cupin_2 PF07883.6 gi|452208573|ref|YP_007488695.1| - 2.2e-11 43.0 1.2 3e-11 42.6 0.8 1.2 1 0 0 1 1 1 1 Cupin domain MannoseP_isomer PF01050.13 gi|452208573|ref|YP_007488695.1| - 5.9e-05 22.7 0.0 7.1e-05 22.4 0.0 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase AraC_binding PF02311.14 gi|452208573|ref|YP_007488695.1| - 0.0015 18.2 0.2 0.0018 17.9 0.1 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_1 PF00190.17 gi|452208573|ref|YP_007488695.1| - 0.0016 17.8 0.0 0.0024 17.2 0.0 1.3 1 0 0 1 1 1 1 Cupin AraC_binding_2 PF14525.1 gi|452208573|ref|YP_007488695.1| - 0.0037 16.8 0.1 0.0045 16.5 0.0 1.2 1 0 0 1 1 1 1 AraC-binding-like domain CENP-C_C PF11699.3 gi|452208573|ref|YP_007488695.1| - 0.09 12.7 0.0 0.12 12.3 0.0 1.1 1 0 0 1 1 1 0 Mif2/CENP-C like Abhydrolase_6 PF12697.2 gi|452208574|ref|YP_007488696.1| - 7e-20 71.8 2.4 8.7e-20 71.5 1.7 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|452208574|ref|YP_007488696.1| - 1.4e-17 63.8 0.0 1.8e-17 63.4 0.0 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Peptidase_S9 PF00326.16 gi|452208574|ref|YP_007488696.1| - 2.1e-12 46.7 0.0 3e-12 46.2 0.0 1.2 1 0 0 1 1 1 1 Prolyl oligopeptidase family Hydrolase_4 PF12146.3 gi|452208574|ref|YP_007488696.1| - 2.3e-06 27.3 0.7 6.7e-06 25.8 0.1 1.9 2 0 0 2 2 2 1 Putative lysophospholipase Abhydrolase_1 PF00561.15 gi|452208574|ref|YP_007488696.1| - 3.4e-05 23.5 0.1 0.00014 21.5 0.1 1.6 1 1 0 2 2 2 1 alpha/beta hydrolase fold DLH PF01738.13 gi|452208574|ref|YP_007488696.1| - 0.0006 19.1 0.3 0.019 14.2 0.0 2.4 2 1 0 2 2 2 1 Dienelactone hydrolase family AXE1 PF05448.7 gi|452208574|ref|YP_007488696.1| - 0.0028 16.1 0.0 0.011 14.2 0.0 1.7 1 1 1 2 2 2 1 Acetyl xylan esterase (AXE1) Peptidase_S15 PF02129.13 gi|452208574|ref|YP_007488696.1| - 0.0042 16.5 0.0 0.011 15.2 0.0 1.6 1 1 1 2 2 2 1 X-Pro dipeptidyl-peptidase (S15 family) zf-ribbon_3 PF13248.1 gi|452208575|ref|YP_007488697.1| - 0.0026 16.8 2.6 0.0038 16.3 1.8 1.2 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|452208575|ref|YP_007488697.1| - 0.014 15.1 1.8 0.016 14.9 1.2 1.1 1 0 0 1 1 1 0 Double zinc ribbon HypA PF01155.14 gi|452208575|ref|YP_007488697.1| - 0.046 13.4 2.1 0.051 13.2 1.5 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-IS66 PF13005.2 gi|452208575|ref|YP_007488697.1| - 0.062 13.2 3.3 4.9 7.2 0.1 2.3 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 zinc_ribbon_5 PF13719.1 gi|452208575|ref|YP_007488697.1| - 0.072 12.6 1.2 2.4 7.7 0.0 2.1 2 0 0 2 2 2 0 zinc-ribbon domain DUF2757 PF10955.3 gi|452208575|ref|YP_007488697.1| - 0.081 13.1 0.6 0.081 13.1 0.4 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF2757) vMSA PF00695.14 gi|452208575|ref|YP_007488697.1| - 0.15 11.2 0.1 0.15 11.2 0.1 1.0 1 0 0 1 1 1 0 Major surface antigen from hepadnavirus zinc_ribbon_4 PF13717.1 gi|452208575|ref|YP_007488697.1| - 0.16 11.6 2.0 2.6 7.8 0.0 2.1 2 0 0 2 2 2 0 zinc-ribbon domain UPF0547 PF10571.4 gi|452208575|ref|YP_007488697.1| - 0.27 10.9 4.3 0.61 9.8 0.1 2.1 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zinc_ribbon_2 PF13240.1 gi|452208575|ref|YP_007488697.1| - 0.34 10.4 6.0 0.64 9.5 4.2 1.5 1 1 0 1 1 1 0 zinc-ribbon domain C1_2 PF03107.11 gi|452208575|ref|YP_007488697.1| - 0.34 11.0 4.5 2.2 8.4 0.0 2.1 2 0 0 2 2 2 0 C1 domain Nudix_N_2 PF14803.1 gi|452208575|ref|YP_007488697.1| - 0.93 9.2 5.6 2.2 8.0 0.1 2.9 3 0 0 3 3 3 0 Nudix N-terminal Desulfoferrod_N PF06397.7 gi|452208575|ref|YP_007488697.1| - 5.2 6.5 8.5 42 3.6 5.7 2.0 1 1 0 1 1 1 0 Desulfoferrodoxin, N-terminal domain OrfB_Zn_ribbon PF07282.6 gi|452208575|ref|YP_007488697.1| - 8.3 6.1 7.2 6.3 6.5 0.1 2.1 1 1 1 2 2 2 0 Putative transposase DNA-binding domain Peptidase_MA_2 PF13485.1 gi|452208576|ref|YP_007488698.1| - 9.8e-06 25.6 0.2 9.8e-06 25.6 0.1 2.1 2 0 0 2 2 2 1 Peptidase MA superfamily DUF4157 PF13699.1 gi|452208576|ref|YP_007488698.1| - 0.013 15.6 0.3 0.051 13.7 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4157) Peptidase_M76 PF09768.4 gi|452208576|ref|YP_007488698.1| - 0.099 12.0 0.0 0.15 11.4 0.0 1.2 1 0 0 1 1 1 0 Peptidase M76 family Glutaredoxin PF00462.19 gi|452208577|ref|YP_007488699.1| - 7.3e-15 54.7 0.0 1e-14 54.2 0.0 1.2 1 1 0 1 1 1 1 Glutaredoxin GST_N_3 PF13417.1 gi|452208577|ref|YP_007488699.1| - 1.1e-11 44.8 0.0 1.2e-11 44.6 0.0 1.0 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N_2 PF13409.1 gi|452208577|ref|YP_007488699.1| - 1.6e-07 31.1 0.0 1.9e-07 30.9 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain DUF836 PF05768.9 gi|452208577|ref|YP_007488699.1| - 0.00085 19.5 0.1 0.00091 19.4 0.0 1.4 1 1 0 1 1 1 1 Glutaredoxin-like domain (DUF836) Thioredoxin_2 PF13098.1 gi|452208577|ref|YP_007488699.1| - 0.022 14.9 0.0 0.049 13.8 0.0 1.7 1 1 0 1 1 1 0 Thioredoxin-like domain Thioredoxin_4 PF13462.1 gi|452208577|ref|YP_007488699.1| - 0.08 12.9 0.0 1.4 8.8 0.0 2.0 2 0 0 2 2 2 0 Thioredoxin Agenet PF05641.7 gi|452208577|ref|YP_007488699.1| - 0.13 12.4 0.1 0.28 11.3 0.0 1.7 2 1 0 2 2 2 0 Agenet domain PMP22_Claudin PF00822.15 gi|452208578|ref|YP_007488700.1| - 0.05 13.2 2.4 0.06 13.0 1.7 1.1 1 0 0 1 1 1 0 PMP-22/EMP/MP20/Claudin family Aminotran_3 PF00202.16 gi|452208579|ref|YP_007488701.1| - 1.5e-68 231.1 0.0 2e-68 230.7 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.16 gi|452208579|ref|YP_007488701.1| - 0.0022 17.0 0.0 0.0032 16.4 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class I and II HTH_24 PF13412.1 gi|452208580|ref|YP_007488702.1| - 8.8e-07 28.2 0.0 3.2e-06 26.4 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|452208580|ref|YP_007488702.1| - 0.00019 21.0 0.0 0.00033 20.2 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_AsnC-type PF13404.1 gi|452208580|ref|YP_007488702.1| - 0.00026 20.4 0.1 0.00067 19.1 0.0 1.7 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain TrmB PF01978.14 gi|452208580|ref|YP_007488702.1| - 0.00028 20.5 0.0 0.0007 19.2 0.0 1.6 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|452208580|ref|YP_007488702.1| - 0.00039 20.0 0.1 0.00097 18.7 0.1 1.6 1 0 0 1 1 1 1 MarR family AsnC_trans_reg PF01037.16 gi|452208580|ref|YP_007488702.1| - 0.00075 19.1 0.1 0.0015 18.2 0.1 1.4 1 0 0 1 1 1 1 AsnC family HTH_27 PF13463.1 gi|452208580|ref|YP_007488702.1| - 0.0012 19.1 0.1 0.0052 17.0 0.0 2.0 3 0 0 3 3 2 1 Winged helix DNA-binding domain HTH_10 PF04967.7 gi|452208580|ref|YP_007488702.1| - 0.0018 17.8 0.0 0.0031 17.0 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain HTH_20 PF12840.2 gi|452208580|ref|YP_007488702.1| - 0.0029 17.3 0.0 0.0078 15.9 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_DeoR PF08220.7 gi|452208580|ref|YP_007488702.1| - 0.011 15.1 0.1 0.022 14.3 0.0 1.4 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_23 PF13384.1 gi|452208580|ref|YP_007488702.1| - 0.013 15.1 0.1 0.036 13.7 0.0 1.8 2 0 0 2 2 2 0 Homeodomain-like domain LexA_DNA_bind PF01726.11 gi|452208580|ref|YP_007488702.1| - 0.019 14.4 0.0 0.052 13.1 0.0 1.7 2 0 0 2 2 2 0 LexA DNA binding domain HTH_29 PF13551.1 gi|452208580|ref|YP_007488702.1| - 0.022 14.8 0.0 0.058 13.5 0.0 1.6 1 1 0 1 1 1 0 Winged helix-turn helix HTH_Tnp_ISL3 PF13542.1 gi|452208580|ref|YP_007488702.1| - 0.023 13.8 0.1 0.063 12.4 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 DUF501 PF04417.7 gi|452208580|ref|YP_007488702.1| - 0.047 13.5 0.0 0.15 11.9 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF501) Rrf2 PF02082.15 gi|452208580|ref|YP_007488702.1| - 0.083 13.0 0.0 0.16 12.1 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator MarR PF01047.17 gi|452208580|ref|YP_007488702.1| - 0.13 11.9 0.0 0.41 10.4 0.0 1.8 2 0 0 2 2 1 0 MarR family HTH_34 PF13601.1 gi|452208580|ref|YP_007488702.1| - 0.15 12.1 0.0 0.25 11.3 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain Ammonium_transp PF00909.16 gi|452208581|ref|YP_007488703.1| - 5.9e-93 311.4 39.2 7.9e-93 311.0 27.2 1.2 1 0 0 1 1 1 1 Ammonium Transporter Family P-II PF00543.17 gi|452208581|ref|YP_007488703.1| - 6.4e-31 106.8 0.3 1.8e-30 105.4 0.0 2.0 2 0 0 2 2 2 1 Nitrogen regulatory protein P-II ALAD PF00490.16 gi|452208582|ref|YP_007488704.1| - 1e-137 458.4 0.0 1.1e-137 458.2 0.0 1.0 1 0 0 1 1 1 1 Delta-aminolevulinic acid dehydratase DNA_binding_1 PF01035.15 gi|452208583|ref|YP_007488705.1| - 9.2e-06 25.3 0.0 1.5e-05 24.6 0.0 1.4 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain DUF4203 PF13886.1 gi|452208584|ref|YP_007488706.1| - 2.8 7.3 37.9 0.47 9.8 23.6 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4203) DUF4131 PF13567.1 gi|452208585|ref|YP_007488707.1| - 2.4e-05 23.8 1.0 3.1e-05 23.4 0.7 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4131) DUF3426 PF11906.3 gi|452208585|ref|YP_007488707.1| - 0.00013 21.6 0.7 0.00049 19.7 0.5 1.8 1 1 0 1 1 1 1 Protein of unknown function (DUF3426) Wzy_C PF04932.10 gi|452208585|ref|YP_007488707.1| - 0.051 13.3 0.1 0.066 12.9 0.1 1.1 1 0 0 1 1 1 0 O-Antigen ligase CARDB PF07705.6 gi|452208585|ref|YP_007488707.1| - 0.1 12.6 0.0 0.12 12.4 0.0 1.2 1 0 0 1 1 1 0 CARDB DUF4352 PF11611.3 gi|452208585|ref|YP_007488707.1| - 0.13 12.3 0.0 0.17 12.0 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4352) zf-ribbon_3 PF13248.1 gi|452208586|ref|YP_007488708.1| - 0.00011 21.3 3.1 0.00015 20.8 2.2 1.3 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|452208586|ref|YP_007488708.1| - 0.00022 20.5 3.5 0.00032 20.0 2.4 1.2 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|452208586|ref|YP_007488708.1| - 0.00041 20.0 1.5 0.00059 19.5 1.1 1.2 1 0 0 1 1 1 1 Double zinc ribbon DUF606 PF04657.8 gi|452208586|ref|YP_007488708.1| - 0.012 15.7 3.4 0.35 10.9 0.1 2.0 1 1 1 2 2 2 0 Protein of unknown function, DUF606 YrhK PF14145.1 gi|452208586|ref|YP_007488708.1| - 0.015 14.9 1.5 0.023 14.3 1.0 1.3 1 0 0 1 1 1 0 YrhK-like protein Nudix_N_2 PF14803.1 gi|452208586|ref|YP_007488708.1| - 0.29 10.8 2.1 4.7 6.9 0.0 2.4 2 0 0 2 2 2 0 Nudix N-terminal Peptidase_S24 PF00717.18 gi|452208587|ref|YP_007488709.1| - 1.8e-06 27.5 0.2 5.3e-06 25.9 0.1 1.8 1 1 0 1 1 1 1 Peptidase S24-like Abhydrolase_1 PF00561.15 gi|452208588|ref|YP_007488710.1| - 1.4e-17 64.0 0.0 2.4e-17 63.2 0.0 1.4 1 0 0 1 1 1 1 alpha/beta hydrolase fold PhaC_N PF07167.8 gi|452208588|ref|YP_007488710.1| - 3.3e-11 42.9 0.0 5.6e-11 42.1 0.0 1.3 1 0 0 1 1 1 1 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus Abhydrolase_6 PF12697.2 gi|452208588|ref|YP_007488710.1| - 5.3e-10 39.5 0.0 1.3e-09 38.3 0.0 1.5 1 1 0 1 1 1 1 Alpha/beta hydrolase family DUF3141 PF11339.3 gi|452208588|ref|YP_007488710.1| - 5.5e-09 34.9 0.0 1.9e-06 26.5 0.0 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF3141) Abhydrolase_5 PF12695.2 gi|452208588|ref|YP_007488710.1| - 1.3e-08 34.6 0.0 2.6e-07 30.5 0.0 2.3 1 1 0 1 1 1 1 Alpha/beta hydrolase family DLH PF01738.13 gi|452208588|ref|YP_007488710.1| - 3.1e-06 26.6 0.0 0.0035 16.6 0.0 2.8 2 1 1 3 3 3 2 Dienelactone hydrolase family PHB_depo_C PF06850.6 gi|452208588|ref|YP_007488710.1| - 8.4e-06 25.1 0.0 1.3e-05 24.5 0.0 1.3 1 0 0 1 1 1 1 PHB de-polymerase C-terminus HHH_5 PF14520.1 gi|452208588|ref|YP_007488710.1| - 1e-05 25.6 1.0 2.6e-05 24.2 0.7 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix domain FSH1 PF03959.8 gi|452208588|ref|YP_007488710.1| - 0.00096 18.6 0.0 0.013 15.0 0.0 2.1 2 0 0 2 2 2 1 Serine hydrolase (FSH1) Lipase_2 PF01674.13 gi|452208588|ref|YP_007488710.1| - 0.11 11.7 0.0 0.62 9.3 0.0 2.0 1 1 1 2 2 2 0 Lipase (class 2) BAAT_C PF08840.6 gi|452208588|ref|YP_007488710.1| - 0.14 11.8 0.1 1.4 8.6 0.0 2.2 2 0 0 2 2 2 0 BAAT / Acyl-CoA thioester hydrolase C terminal DUF2048 PF09752.4 gi|452208588|ref|YP_007488710.1| - 0.22 10.3 0.2 0.36 9.6 0.1 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2048) PHA_synth_III_E PF09712.5 gi|452208589|ref|YP_007488711.1| - 1.6e-17 63.8 0.6 1.6e-17 63.8 0.4 2.2 1 1 1 2 2 2 1 Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E) Phasin PF05597.6 gi|452208589|ref|YP_007488711.1| - 0.0001 22.0 5.2 0.00012 21.8 0.3 2.3 1 1 1 2 2 2 1 Poly(hydroxyalcanoate) granule associated protein (phasin) DUF4083 PF13314.1 gi|452208589|ref|YP_007488711.1| - 0.0099 15.6 0.5 0.0099 15.6 0.3 1.9 2 1 0 2 2 2 1 Domain of unknown function (DUF4083) IMD PF08397.6 gi|452208589|ref|YP_007488711.1| - 0.046 13.0 0.9 0.42 9.8 0.1 2.3 2 0 0 2 2 2 0 IRSp53/MIM homology domain P4Ha_N PF08336.6 gi|452208589|ref|YP_007488711.1| - 0.066 13.0 2.1 0.71 9.6 0.3 2.3 2 0 0 2 2 2 0 Prolyl 4-Hydroxylase alpha-subunit, N-terminal region CheZ PF04344.8 gi|452208589|ref|YP_007488711.1| - 0.15 11.6 4.0 0.09 12.4 0.4 2.0 1 1 1 2 2 2 0 Chemotaxis phosphatase, CheZ BLOC1_2 PF10046.4 gi|452208589|ref|YP_007488711.1| - 0.58 10.3 6.5 0.77 9.9 0.5 2.7 2 1 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 TipAS PF07739.8 gi|452208589|ref|YP_007488711.1| - 0.92 9.8 11.0 1.9 8.8 5.9 2.3 1 1 1 2 2 2 0 TipAS antibiotic-recognition domain RRP7 PF12923.2 gi|452208589|ref|YP_007488711.1| - 2 8.4 5.2 0.37 10.7 0.2 2.1 2 1 0 2 2 2 0 Ribosomal RNA-processing protein 7 (RRP7) ATC_hydrolase PF14196.1 gi|452208589|ref|YP_007488711.1| - 2 8.7 6.3 1.5 9.2 0.8 2.2 1 1 1 2 2 2 0 L-2-amino-thiazoline-4-carboxylic acid hydrolase Sipho_Gp157 PF05565.6 gi|452208589|ref|YP_007488711.1| - 9.7 5.7 7.2 5.2 6.6 1.1 2.6 1 1 1 2 2 2 0 Siphovirus Gp157 DUF3584 PF12128.3 gi|452208590|ref|YP_007488712.1| - 3.3e-06 24.7 14.0 4.1e-06 24.4 9.7 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) Apolipoprotein PF01442.13 gi|452208590|ref|YP_007488712.1| - 8.1e-05 22.2 17.1 8.6e-05 22.1 10.0 1.9 1 1 1 2 2 2 2 Apolipoprotein A1/A4/E domain Baculo_PEP_C PF04513.7 gi|452208590|ref|YP_007488712.1| - 0.00037 20.3 1.2 0.026 14.3 0.5 2.3 1 1 1 2 2 2 1 Baculovirus polyhedron envelope protein, PEP, C terminus P35 PF02331.10 gi|452208590|ref|YP_007488712.1| - 0.0065 15.6 0.0 0.01 15.0 0.0 1.3 1 0 0 1 1 1 1 Apoptosis preventing protein Matrilin_ccoil PF10393.4 gi|452208590|ref|YP_007488712.1| - 0.0084 15.4 6.0 0.77 9.1 0.3 3.0 2 1 1 3 3 3 2 Trimeric coiled-coil oligomerisation domain of matrilin DUF1664 PF07889.7 gi|452208590|ref|YP_007488712.1| - 0.019 14.7 3.1 1.2 8.9 0.3 2.6 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) Alpha-E PF04168.7 gi|452208590|ref|YP_007488712.1| - 0.042 13.2 6.2 0.21 10.9 1.2 2.2 2 0 0 2 2 2 0 A predicted alpha-helical domain with a conserved ER motif. NPV_P10 PF05531.7 gi|452208590|ref|YP_007488712.1| - 0.06 13.5 3.6 25 5.2 2.5 3.3 1 1 1 2 2 2 0 Nucleopolyhedrovirus P10 protein PilJ PF13675.1 gi|452208590|ref|YP_007488712.1| - 0.089 13.1 12.0 0.18 12.1 2.0 2.9 1 1 1 2 2 2 0 Type IV pili methyl-accepting chemotaxis transducer N-term Phasin PF05597.6 gi|452208590|ref|YP_007488712.1| - 0.1 12.3 8.6 1.6 8.4 0.8 2.9 1 1 2 3 3 3 0 Poly(hydroxyalcanoate) granule associated protein (phasin) FlxA PF14282.1 gi|452208590|ref|YP_007488712.1| - 0.12 12.3 0.3 0.12 12.3 0.2 2.8 3 0 0 3 3 3 0 FlxA-like protein ISG65-75 PF11727.3 gi|452208590|ref|YP_007488712.1| - 0.17 10.9 4.3 0.13 11.3 0.9 1.9 1 1 1 2 2 2 0 Invariant surface glycoprotein DUF2203 PF09969.4 gi|452208590|ref|YP_007488712.1| - 0.19 11.9 3.9 0.71 10.1 0.1 2.7 1 1 2 3 3 3 0 Uncharacterized conserved protein (DUF2203) Rsd_AlgQ PF04353.8 gi|452208590|ref|YP_007488712.1| - 0.23 11.1 4.8 0.13 11.9 1.1 2.1 1 1 1 2 2 2 0 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ DUF16 PF01519.11 gi|452208590|ref|YP_007488712.1| - 0.34 11.1 3.5 5.8 7.2 2.4 2.5 1 1 0 1 1 1 0 Protein of unknown function DUF16 DUF2277 PF10041.4 gi|452208590|ref|YP_007488712.1| - 0.43 10.5 6.1 30 4.6 0.1 3.7 4 0 0 4 4 4 0 Uncharacterized conserved protein (DUF2277) CDC37_N PF03234.9 gi|452208590|ref|YP_007488712.1| - 0.44 10.8 5.7 0.31 11.3 2.3 1.8 1 1 1 2 2 2 0 Cdc37 N terminal kinase binding DUF3813 PF12758.2 gi|452208590|ref|YP_007488712.1| - 0.45 10.6 12.4 1.8 8.7 2.2 2.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3813) Mer2 PF09074.5 gi|452208590|ref|YP_007488712.1| - 0.53 10.1 4.4 1.3 8.8 0.6 2.8 1 1 2 3 3 3 0 Mer2 DUF2580 PF10824.3 gi|452208590|ref|YP_007488712.1| - 0.79 10.1 9.9 0.3 11.4 1.0 3.1 1 1 3 4 4 4 0 Protein of unknown function (DUF2580) DUF842 PF05811.8 gi|452208590|ref|YP_007488712.1| - 0.8 9.1 4.0 4.3 6.8 0.8 2.8 1 1 1 3 3 3 0 Eukaryotic protein of unknown function (DUF842) TMP_2 PF06791.8 gi|452208590|ref|YP_007488712.1| - 0.84 9.2 5.1 10 5.6 3.5 2.2 1 1 0 1 1 1 0 Prophage tail length tape measure protein FH2 PF02181.18 gi|452208590|ref|YP_007488712.1| - 0.89 8.3 6.1 0.71 8.6 3.6 1.5 1 1 0 1 1 1 0 Formin Homology 2 Domain DUF2317 PF10079.4 gi|452208590|ref|YP_007488712.1| - 1 7.8 9.8 1.1 7.7 3.4 2.2 1 1 2 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2317) Atg14 PF10186.4 gi|452208590|ref|YP_007488712.1| - 1.1 8.1 4.2 1.9 7.3 0.1 2.1 1 1 1 2 2 2 0 UV radiation resistance protein and autophagy-related subunit 14 DUF1690 PF07956.6 gi|452208590|ref|YP_007488712.1| - 1.4 8.8 7.5 0.53 10.2 1.7 2.4 1 1 1 2 2 2 0 Protein of Unknown function (DUF1690) FdhE PF04216.7 gi|452208590|ref|YP_007488712.1| - 1.5 8.4 7.2 2 8.0 5.0 1.3 1 0 0 1 1 1 0 Protein involved in formate dehydrogenase formation Cob_adeno_trans PF01923.13 gi|452208590|ref|YP_007488712.1| - 1.8 8.3 6.7 2 8.1 2.2 2.1 1 1 1 2 2 2 0 Cobalamin adenosyltransferase Exonuc_VII_S PF02609.11 gi|452208590|ref|YP_007488712.1| - 2.9 7.7 10.2 35 4.2 4.0 3.6 2 1 0 2 2 2 0 Exonuclease VII small subunit DUF883 PF05957.8 gi|452208590|ref|YP_007488712.1| - 4.2 7.8 17.6 3 8.3 0.4 3.9 1 1 3 4 4 4 0 Bacterial protein of unknown function (DUF883) DUF4404 PF14357.1 gi|452208590|ref|YP_007488712.1| - 4.3 7.8 17.0 13 6.2 4.2 3.6 1 1 3 4 4 4 0 Domain of unknown function (DUF4404) DUF1993 PF09351.5 gi|452208590|ref|YP_007488712.1| - 5.4 6.9 7.0 2.7 7.8 0.9 2.7 1 1 2 3 3 3 0 Domain of unknown function (DUF1993) DUF4168 PF13767.1 gi|452208590|ref|YP_007488712.1| - 6.2 7.5 7.1 3.4 8.3 0.6 3.0 3 1 0 3 3 3 0 Domain of unknown function (DUF4168) Antitoxin-MazE PF04014.13 gi|452208591|ref|YP_007488713.1| - 0.095 12.4 0.3 0.15 11.7 0.2 1.3 1 0 0 1 1 1 0 Antidote-toxin recognition MazE MaoC_dehydratas PF01575.14 gi|452208592|ref|YP_007488714.1| - 1.9e-27 95.0 0.0 3e-27 94.4 0.0 1.2 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.1 gi|452208592|ref|YP_007488714.1| - 3.7e-10 39.7 0.0 1.2e-09 38.0 0.0 1.9 1 1 0 1 1 1 1 N-terminal half of MaoC dehydratase 4HBT PF03061.17 gi|452208592|ref|YP_007488714.1| - 0.0007 19.6 0.1 0.0023 18.0 0.0 1.9 1 1 0 1 1 1 1 Thioesterase superfamily 4HBT_2 PF13279.1 gi|452208592|ref|YP_007488714.1| - 0.0013 19.1 0.0 0.002 18.5 0.0 1.3 1 0 0 1 1 1 1 Thioesterase-like superfamily CGI-121 PF08617.5 gi|452208594|ref|YP_007488716.1| - 1.4e-17 63.8 0.0 1.7e-17 63.5 0.0 1.1 1 0 0 1 1 1 1 Kinase binding protein CGI-121 PTS-HPr PF00381.14 gi|452208594|ref|YP_007488716.1| - 0.15 11.9 1.7 0.57 10.1 1.2 2.0 1 1 0 1 1 1 0 PTS HPr component phosphorylation site DEAD PF00270.24 gi|452208595|ref|YP_007488717.1| - 6.5e-24 84.3 0.0 1.3e-23 83.3 0.0 1.5 1 0 0 1 1 1 1 DEAD/DEAH box helicase HHH_5 PF14520.1 gi|452208595|ref|YP_007488717.1| - 6.9e-09 35.7 6.1 3.5e-07 30.2 1.5 3.6 3 0 0 3 3 3 1 Helix-hairpin-helix domain Helicase_C PF00271.26 gi|452208595|ref|YP_007488717.1| - 1.3e-06 28.1 0.0 2.8e-06 27.0 0.0 1.5 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DNA_pol_lambd_f PF10391.4 gi|452208595|ref|YP_007488717.1| - 8.3e-06 25.2 0.0 8.7e-05 21.9 0.0 2.4 2 0 0 2 2 2 1 Fingers domain of DNA polymerase lambda ResIII PF04851.10 gi|452208595|ref|YP_007488717.1| - 0.00023 21.0 0.0 0.0019 18.0 0.0 2.2 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit HHH PF00633.18 gi|452208595|ref|YP_007488717.1| - 0.1 12.3 0.1 0.46 10.2 0.0 2.3 2 0 0 2 2 2 0 Helix-hairpin-helix motif HATPase_c PF02518.21 gi|452208596|ref|YP_007488718.1| - 2.2e-19 69.2 0.0 4.5e-19 68.2 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Response_reg PF00072.19 gi|452208596|ref|YP_007488718.1| - 7.4e-19 67.8 0.0 1.6e-18 66.7 0.0 1.6 1 0 0 1 1 1 1 Response regulator receiver domain PAS_9 PF13426.1 gi|452208596|ref|YP_007488718.1| - 3.2e-11 43.5 0.0 9.4e-11 42.0 0.0 1.8 1 0 0 1 1 1 1 PAS domain PAS PF00989.19 gi|452208596|ref|YP_007488718.1| - 9.9e-11 41.4 0.0 2.1e-10 40.3 0.0 1.6 1 0 0 1 1 1 1 PAS fold HisKA PF00512.20 gi|452208596|ref|YP_007488718.1| - 1.6e-10 40.7 0.6 8.9e-10 38.4 0.1 2.4 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_8 PF13188.1 gi|452208596|ref|YP_007488718.1| - 1.4e-06 27.9 0.0 4.2e-06 26.4 0.0 1.8 1 0 0 1 1 1 1 PAS domain HATPase_c_2 PF13581.1 gi|452208596|ref|YP_007488718.1| - 0.0002 21.1 0.1 0.00061 19.5 0.0 1.8 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain PAS_4 PF08448.5 gi|452208596|ref|YP_007488718.1| - 0.00023 21.1 0.4 0.00093 19.2 0.0 2.3 3 1 1 4 4 4 1 PAS fold OKR_DC_1_N PF03709.10 gi|452208596|ref|YP_007488718.1| - 0.0025 17.8 0.0 0.0056 16.7 0.0 1.6 1 0 0 1 1 1 1 Orn/Lys/Arg decarboxylase, N-terminal domain HATPase_c_3 PF13589.1 gi|452208596|ref|YP_007488718.1| - 0.0052 16.4 0.0 0.01 15.4 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Fer4_15 PF13459.1 gi|452208597|ref|YP_007488719.1| - 2.2e-15 56.9 2.8 2.8e-15 56.6 2.0 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|452208597|ref|YP_007488719.1| - 8.1e-05 22.9 3.3 0.00028 21.1 2.3 2.0 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4 PF00037.22 gi|452208597|ref|YP_007488719.1| - 0.012 15.1 1.0 0.38 10.4 0.2 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_6 PF12837.2 gi|452208597|ref|YP_007488719.1| - 0.015 15.1 1.5 1.8 8.5 0.1 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_10 PF13237.1 gi|452208597|ref|YP_007488719.1| - 0.058 13.1 0.0 0.34 10.7 0.0 1.9 2 0 0 2 2 2 0 4Fe-4S dicluster domain Ldh_1_N PF00056.18 gi|452208598|ref|YP_007488720.1| - 1.3e-38 131.9 0.2 1.9e-38 131.4 0.2 1.2 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain Ldh_1_C PF02866.13 gi|452208598|ref|YP_007488720.1| - 8.3e-32 110.2 0.0 1.9e-31 109.1 0.0 1.6 2 0 0 2 2 2 1 lactate/malate dehydrogenase, alpha/beta C-terminal domain PAZ_siRNAbind PF12212.3 gi|452208598|ref|YP_007488720.1| - 0.13 11.8 0.0 0.25 10.9 0.0 1.5 1 0 0 1 1 1 0 Piwi/Argonaute/Zwille siRNA-binding domain ABC_tran PF00005.22 gi|452208599|ref|YP_007488721.1| - 1.4e-20 73.9 0.0 1.6e-10 41.4 0.0 4.1 3 1 0 3 3 3 3 ABC transporter SMC_N PF02463.14 gi|452208599|ref|YP_007488721.1| - 3.7e-09 36.1 0.0 0.36 10.0 0.0 4.2 3 1 0 3 3 3 3 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|452208599|ref|YP_007488721.1| - 2.3e-08 33.4 0.0 0.0038 16.7 0.0 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_21 PF13304.1 gi|452208599|ref|YP_007488721.1| - 2.9e-08 34.0 3.6 0.046 13.6 0.0 4.2 4 0 0 4 4 4 3 AAA domain AAA_25 PF13481.1 gi|452208599|ref|YP_007488721.1| - 1.9e-06 27.4 0.1 0.11 11.9 0.0 3.4 4 0 0 4 4 3 2 AAA domain AAA_16 PF13191.1 gi|452208599|ref|YP_007488721.1| - 2.4e-06 27.6 0.0 0.036 14.0 0.0 3.1 3 0 0 3 3 2 2 AAA ATPase domain AAA_22 PF13401.1 gi|452208599|ref|YP_007488721.1| - 1.3e-05 25.3 0.0 0.4 10.8 0.0 3.3 3 0 0 3 3 2 2 AAA domain AAA_10 PF12846.2 gi|452208599|ref|YP_007488721.1| - 4.7e-05 22.9 0.4 0.042 13.2 0.0 3.2 4 0 0 4 4 4 1 AAA-like domain AAA_18 PF13238.1 gi|452208599|ref|YP_007488721.1| - 4.9e-05 23.6 0.3 0.13 12.5 0.0 3.2 3 0 0 3 3 2 1 AAA domain AAA_14 PF13173.1 gi|452208599|ref|YP_007488721.1| - 0.00017 21.4 0.0 0.19 11.5 0.0 3.0 3 0 0 3 3 3 1 AAA domain DnaJ_CXXCXGXG PF00684.14 gi|452208599|ref|YP_007488721.1| - 0.00025 21.0 10.0 0.0049 16.8 0.6 3.8 4 0 0 4 4 3 1 DnaJ central domain DUF258 PF03193.11 gi|452208599|ref|YP_007488721.1| - 0.00025 20.2 0.0 0.64 9.1 0.0 2.3 2 0 0 2 2 2 2 Protein of unknown function, DUF258 AAA_33 PF13671.1 gi|452208599|ref|YP_007488721.1| - 0.00033 20.5 0.1 1.2 9.0 0.0 3.4 3 0 0 3 3 3 2 AAA domain AAA_17 PF13207.1 gi|452208599|ref|YP_007488721.1| - 0.00044 21.0 7.5 0.34 11.7 0.0 4.8 5 1 0 5 5 4 2 AAA domain KaiC PF06745.8 gi|452208599|ref|YP_007488721.1| - 0.00071 18.7 0.0 0.26 10.3 0.0 2.5 2 0 0 2 2 2 1 KaiC AAA_23 PF13476.1 gi|452208599|ref|YP_007488721.1| - 0.00082 19.7 0.0 0.81 9.9 0.0 2.5 2 0 0 2 2 2 1 AAA domain AAA_15 PF13175.1 gi|452208599|ref|YP_007488721.1| - 0.0012 17.9 0.0 1.1 8.2 0.0 2.7 3 0 0 3 3 3 2 AAA ATPase domain APS_kinase PF01583.15 gi|452208599|ref|YP_007488721.1| - 0.0026 17.4 0.0 2.7 7.6 0.0 2.6 2 0 0 2 2 2 2 Adenylylsulphate kinase Arch_ATPase PF01637.13 gi|452208599|ref|YP_007488721.1| - 0.003 17.2 0.0 2.5 7.7 0.0 2.4 2 0 0 2 2 2 2 Archaeal ATPase NACHT PF05729.7 gi|452208599|ref|YP_007488721.1| - 0.0035 17.0 0.0 0.17 11.5 0.0 2.4 2 0 0 2 2 2 1 NACHT domain cobW PF02492.14 gi|452208599|ref|YP_007488721.1| - 0.0049 16.3 0.0 0.28 10.6 0.0 2.4 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain Viral_helicase1 PF01443.13 gi|452208599|ref|YP_007488721.1| - 0.012 15.1 0.0 0.41 10.1 0.0 2.3 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase DUF2075 PF09848.4 gi|452208599|ref|YP_007488721.1| - 0.019 13.9 0.0 4.7 6.0 0.0 2.2 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) MMR_HSR1 PF01926.18 gi|452208599|ref|YP_007488721.1| - 0.022 14.6 0.0 1 9.3 0.0 3.0 3 0 0 3 3 2 0 50S ribosome-binding GTPase MobB PF03205.9 gi|452208599|ref|YP_007488721.1| - 0.031 13.9 0.1 1.1 8.9 0.0 2.5 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_19 PF13245.1 gi|452208599|ref|YP_007488721.1| - 0.038 13.7 0.1 7.4 6.4 0.0 3.1 2 0 0 2 2 2 0 Part of AAA domain Miro PF08477.8 gi|452208599|ref|YP_007488721.1| - 0.039 14.4 0.1 6.2 7.3 0.0 2.7 3 0 0 3 3 2 0 Miro-like protein FtsK_SpoIIIE PF01580.13 gi|452208599|ref|YP_007488721.1| - 0.089 12.2 0.5 1.5 8.2 0.0 2.9 3 0 0 3 3 3 0 FtsK/SpoIIIE family NTPase_1 PF03266.10 gi|452208599|ref|YP_007488721.1| - 0.2 11.3 1.7 0.85 9.3 0.1 2.7 3 0 0 3 3 3 0 NTPase Zn-ribbon_8 PF09723.5 gi|452208599|ref|YP_007488721.1| - 0.8 9.7 15.6 13 5.8 0.0 4.7 4 1 0 4 4 4 0 Zinc ribbon domain DZR PF12773.2 gi|452208599|ref|YP_007488721.1| - 0.92 9.3 9.8 4 7.3 0.3 3.9 4 0 0 4 4 4 0 Double zinc ribbon Zn_Tnp_IS91 PF14319.1 gi|452208599|ref|YP_007488721.1| - 1.1 8.8 2.2 1.4 8.4 0.0 2.3 3 0 0 3 3 1 0 Transposase zinc-binding domain DNA_pol_E_B PF04042.11 gi|452208600|ref|YP_007488722.1| - 1.4e-14 53.8 0.0 1.9e-14 53.3 0.0 1.1 1 0 0 1 1 1 1 DNA polymerase alpha/epsilon subunit B Metallophos_2 PF12850.2 gi|452208600|ref|YP_007488722.1| - 2.1e-13 50.4 0.0 5e-13 49.1 0.0 1.6 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|452208600|ref|YP_007488722.1| - 1e-07 31.5 0.5 2e-07 30.6 0.4 1.5 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase DUF296 PF03479.10 gi|452208603|ref|YP_007488725.1| - 2.2e-26 91.8 0.0 2.4e-26 91.6 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF296) PolC_DP2 PF03833.8 gi|452208604|ref|YP_007488726.1| - 0 1288.1 0.1 5.4e-259 861.5 0.0 2.2 1 1 1 2 2 2 2 DNA polymerase II large subunit DP2 Hint PF01079.15 gi|452208604|ref|YP_007488726.1| - 0.00099 18.3 0.0 0.0019 17.4 0.0 1.4 1 0 0 1 1 1 1 Hint module DUF2345 PF10106.4 gi|452208604|ref|YP_007488726.1| - 0.0044 16.6 15.9 0.0085 15.7 11.0 1.4 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2345) Nop10p PF04135.7 gi|452208604|ref|YP_007488726.1| - 1 9.1 4.0 1.2 8.8 0.0 2.9 3 0 0 3 3 3 0 Nucleolar RNA-binding protein, Nop10p family DUF2072 PF09845.4 gi|452208604|ref|YP_007488726.1| - 2.1 8.2 7.1 1.7 8.5 0.3 3.4 3 0 0 3 3 3 0 Zn-ribbon containing protein (DUF2072) DZR PF12773.2 gi|452208604|ref|YP_007488726.1| - 3 7.7 17.4 25 4.7 0.3 3.2 2 1 0 2 2 2 0 Double zinc ribbon HypA PF01155.14 gi|452208604|ref|YP_007488726.1| - 6.3 6.5 14.9 2.2 7.9 0.6 3.4 2 1 1 3 3 3 0 Hydrogenase expression/synthesis hypA family zinc-ribbons_6 PF07191.7 gi|452208604|ref|YP_007488726.1| - 7.3 6.4 12.0 24 4.8 5.4 2.9 2 1 0 2 2 2 0 zinc-ribbons DUF4514 PF14986.1 gi|452208605|ref|YP_007488727.1| - 0.06 13.1 0.2 2.2 8.1 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4514) Imm23 PF15593.1 gi|452208605|ref|YP_007488727.1| - 0.093 12.9 0.0 0.13 12.4 0.0 1.3 1 1 0 1 1 1 0 Immunity protein 23 bPH_2 PF03703.9 gi|452208606|ref|YP_007488728.1| - 4.5e-10 39.3 0.5 7.6e-10 38.6 0.4 1.4 1 0 0 1 1 1 1 Bacterial PH domain 7TM_GPCR_Srv PF10323.4 gi|452208606|ref|YP_007488728.1| - 0.0022 17.1 0.1 0.0029 16.7 0.0 1.1 1 0 0 1 1 1 1 Serpentine type 7TM GPCR chemoreceptor Srv bPH_3 PF14470.1 gi|452208606|ref|YP_007488728.1| - 0.0049 17.0 0.1 0.012 15.8 0.1 1.7 1 1 0 1 1 1 1 Bacterial PH domain DUF3671 PF12420.3 gi|452208606|ref|YP_007488728.1| - 0.041 13.8 1.2 0.059 13.3 0.8 1.2 1 0 0 1 1 1 0 Protein of unknown function DUF912 PF06024.7 gi|452208606|ref|YP_007488728.1| - 1.1 9.3 5.0 23 5.0 2.1 2.6 3 0 0 3 3 3 0 Nucleopolyhedrovirus protein of unknown function (DUF912) Copper-bind PF00127.15 gi|452208608|ref|YP_007488730.1| - 2.3e-11 43.7 0.5 5.4e-11 42.6 0.0 1.9 2 0 0 2 2 2 1 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.1 gi|452208608|ref|YP_007488730.1| - 9.6e-05 22.2 0.0 0.00013 21.7 0.0 1.2 1 0 0 1 1 1 1 Cupredoxin-like domain BUD22 PF09073.5 gi|452208608|ref|YP_007488730.1| - 0.094 11.7 7.8 0.089 11.8 5.4 1.1 1 0 0 1 1 1 0 BUD22 DUF1510 PF07423.6 gi|452208608|ref|YP_007488730.1| - 0.11 11.9 8.7 0.033 13.5 3.7 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1510) DUF4661 PF15576.1 gi|452208608|ref|YP_007488730.1| - 2.8 7.5 6.8 3.7 7.1 4.7 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4661) CobT PF06213.7 gi|452208608|ref|YP_007488730.1| - 5.5 6.0 13.2 7.6 5.5 9.1 1.2 1 0 0 1 1 1 0 Cobalamin biosynthesis protein CobT CDC45 PF02724.9 gi|452208608|ref|YP_007488730.1| - 5.8 4.8 12.4 7.4 4.4 8.6 1.1 1 0 0 1 1 1 0 CDC45-like protein Phage_integrase PF00589.17 gi|452208609|ref|YP_007488731.1| - 2.8e-10 40.1 0.0 4.6e-10 39.4 0.0 1.3 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_1 PF02899.12 gi|452208609|ref|YP_007488731.1| - 0.024 14.7 0.2 0.87 9.7 0.0 2.8 3 0 0 3 3 3 0 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.1 gi|452208609|ref|YP_007488731.1| - 0.12 12.7 0.1 0.53 10.6 0.0 2.2 3 0 0 3 3 3 0 Phage integrase, N-terminal SAM-like domain DUF2922 PF11148.3 gi|452208609|ref|YP_007488731.1| - 0.14 11.7 0.1 5.2 6.7 0.0 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2922) HHH_5 PF14520.1 gi|452208610|ref|YP_007488732.1| - 4.8e-08 33.0 3.3 3.1e-07 30.4 0.8 3.2 2 0 0 2 2 2 1 Helix-hairpin-helix domain MutS_V PF00488.16 gi|452208610|ref|YP_007488732.1| - 6e-08 32.3 0.0 9.2e-08 31.7 0.0 1.2 1 0 0 1 1 1 1 MutS domain V HHH PF00633.18 gi|452208610|ref|YP_007488732.1| - 2.4e-05 23.7 4.5 0.001 18.6 0.1 3.9 3 0 0 3 3 3 1 Helix-hairpin-helix motif MutS_III PF05192.13 gi|452208610|ref|YP_007488732.1| - 0.0067 16.2 7.0 0.015 15.0 1.0 2.9 2 1 0 2 2 2 1 MutS domain III HHH_3 PF12836.2 gi|452208610|ref|YP_007488732.1| - 0.2 11.6 0.3 3.3 7.7 0.0 2.9 3 0 0 3 3 3 0 Helix-hairpin-helix motif AAA_16 PF13191.1 gi|452208611|ref|YP_007488733.1| - 6.3e-13 49.1 0.0 2.4e-11 43.9 0.0 2.6 2 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|452208611|ref|YP_007488733.1| - 8.6e-09 35.6 0.0 1.6e-08 34.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain Cdc6_C PF09079.6 gi|452208611|ref|YP_007488733.1| - 7.5e-07 28.7 0.0 2.1e-06 27.3 0.0 1.8 1 0 0 1 1 1 1 CDC6, C terminal AAA PF00004.24 gi|452208611|ref|YP_007488733.1| - 1e-05 25.7 0.0 2.5e-05 24.5 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.1 gi|452208611|ref|YP_007488733.1| - 0.0014 18.4 0.0 0.0026 17.6 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|452208611|ref|YP_007488733.1| - 0.0019 17.9 0.1 0.0045 16.7 0.1 1.6 1 0 0 1 1 1 1 Part of AAA domain DUF815 PF05673.8 gi|452208611|ref|YP_007488733.1| - 0.012 14.5 0.0 0.049 12.5 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF815) IstB_IS21 PF01695.12 gi|452208611|ref|YP_007488733.1| - 0.015 14.7 0.3 2.2 7.6 0.0 2.5 2 0 0 2 2 2 0 IstB-like ATP binding protein Arch_ATPase PF01637.13 gi|452208611|ref|YP_007488733.1| - 0.015 14.9 0.0 0.041 13.5 0.0 1.6 1 1 0 1 1 1 0 Archaeal ATPase Sigma54_activat PF00158.21 gi|452208611|ref|YP_007488733.1| - 0.017 14.5 0.0 0.036 13.5 0.0 1.5 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA_17 PF13207.1 gi|452208611|ref|YP_007488733.1| - 0.021 15.6 0.2 0.073 13.8 0.2 2.2 1 1 0 1 1 1 0 AAA domain AAA_35 PF14516.1 gi|452208611|ref|YP_007488733.1| - 0.024 13.2 0.0 0.16 10.5 0.0 2.2 3 0 0 3 3 3 0 AAA-like domain AAA_30 PF13604.1 gi|452208611|ref|YP_007488733.1| - 0.028 14.0 0.0 0.45 10.0 0.0 2.2 2 0 0 2 2 2 0 AAA domain MarR_2 PF12802.2 gi|452208611|ref|YP_007488733.1| - 0.033 13.8 0.0 0.14 11.8 0.0 2.1 1 1 0 1 1 1 0 MarR family Mg_chelatase PF01078.16 gi|452208611|ref|YP_007488733.1| - 0.036 13.2 0.0 0.06 12.5 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_11 PF13086.1 gi|452208611|ref|YP_007488733.1| - 0.038 13.5 0.0 0.046 13.2 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|452208611|ref|YP_007488733.1| - 0.071 13.0 0.0 0.21 11.4 0.0 1.8 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|452208611|ref|YP_007488733.1| - 0.077 13.3 0.1 0.27 11.5 0.1 2.0 1 1 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|452208611|ref|YP_007488733.1| - 0.079 12.6 0.0 0.13 11.8 0.0 1.4 1 0 0 1 1 1 0 NACHT domain NTPase_1 PF03266.10 gi|452208611|ref|YP_007488733.1| - 0.12 12.0 0.1 0.25 11.0 0.0 1.5 1 0 0 1 1 1 0 NTPase AAA_32 PF13654.1 gi|452208611|ref|YP_007488733.1| - 0.15 10.7 0.0 14 4.2 0.0 2.3 2 0 0 2 2 2 0 AAA domain