# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- Cdc6_C PF09079.6 gi|433593319|ref|YP_007296060.1| - 5.1e-23 80.6 0.4 1.3e-22 79.3 0.0 1.9 2 0 0 2 2 2 1 CDC6, C terminal AAA_16 PF13191.1 gi|433593319|ref|YP_007296060.1| - 1.9e-13 50.8 0.1 1.5e-11 44.5 0.0 3.2 3 1 0 3 3 3 1 AAA ATPase domain AAA_22 PF13401.1 gi|433593319|ref|YP_007296060.1| - 3e-10 40.3 0.1 9.5e-10 38.7 0.0 1.8 2 1 1 3 3 3 1 AAA domain AAA PF00004.24 gi|433593319|ref|YP_007296060.1| - 2e-06 28.0 0.0 5.2e-06 26.6 0.0 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Arch_ATPase PF01637.13 gi|433593319|ref|YP_007296060.1| - 3.6e-05 23.5 0.0 6.7e-05 22.6 0.0 1.4 1 0 0 1 1 1 1 Archaeal ATPase DUF815 PF05673.8 gi|433593319|ref|YP_007296060.1| - 0.00061 18.8 0.0 0.001 18.0 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF815) NB-ARC PF00931.17 gi|433593319|ref|YP_007296060.1| - 0.0028 16.5 0.0 0.0042 15.9 0.0 1.2 1 0 0 1 1 1 1 NB-ARC domain NACHT PF05729.7 gi|433593319|ref|YP_007296060.1| - 0.0034 17.0 0.0 0.0059 16.2 0.0 1.4 1 0 0 1 1 1 1 NACHT domain AAA_5 PF07728.9 gi|433593319|ref|YP_007296060.1| - 0.012 15.3 0.1 0.13 11.9 0.0 2.6 3 1 0 3 3 3 0 AAA domain (dynein-related subfamily) AAA_18 PF13238.1 gi|433593319|ref|YP_007296060.1| - 0.016 15.4 0.1 0.054 13.7 0.0 2.0 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.17 gi|433593319|ref|YP_007296060.1| - 0.016 15.3 0.0 0.03 14.4 0.0 1.4 1 0 0 1 1 1 0 RNA helicase AAA_32 PF13654.1 gi|433593319|ref|YP_007296060.1| - 0.017 13.7 0.6 3.7 6.1 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.1 gi|433593319|ref|YP_007296060.1| - 0.018 14.4 0.0 0.34 10.2 0.0 2.5 3 0 0 3 3 3 0 AAA domain Sigma54_activat PF00158.21 gi|433593319|ref|YP_007296060.1| - 0.074 12.5 0.0 0.17 11.3 0.0 1.6 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA_17 PF13207.1 gi|433593319|ref|YP_007296060.1| - 0.082 13.7 3.5 0.079 13.7 0.6 2.6 2 1 0 2 2 2 0 AAA domain KAP_NTPase PF07693.9 gi|433593319|ref|YP_007296060.1| - 0.11 11.4 0.0 2.5 6.9 0.0 2.2 1 1 1 2 2 2 0 KAP family P-loop domain OrfB_Zn_ribbon PF07282.6 gi|433593320|ref|YP_007296061.1| - 1.8e-22 78.7 2.2 4.5e-22 77.4 1.6 1.7 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|433593320|ref|YP_007296061.1| - 1.2e-13 51.0 0.0 1.7e-13 50.4 0.0 1.2 1 0 0 1 1 1 1 Probable transposase DZR PF12773.2 gi|433593320|ref|YP_007296061.1| - 0.028 14.2 3.5 0.069 12.9 2.4 1.6 1 0 0 1 1 1 0 Double zinc ribbon HypA PF01155.14 gi|433593320|ref|YP_007296061.1| - 0.037 13.6 0.3 0.092 12.4 0.2 1.6 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family DUF2072 PF09845.4 gi|433593320|ref|YP_007296061.1| - 0.062 13.2 2.1 2.8 7.8 0.0 2.9 2 0 0 2 2 2 0 Zn-ribbon containing protein (DUF2072) Peptidase_M55 PF04951.8 gi|433593320|ref|YP_007296061.1| - 0.11 11.7 0.2 0.23 10.6 0.0 1.6 2 0 0 2 2 2 0 D-aminopeptidase DNA_RNApol_7kD PF03604.8 gi|433593320|ref|YP_007296061.1| - 0.54 9.7 2.8 2.5 7.6 2.0 2.0 1 1 1 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit IBR PF01485.16 gi|433593320|ref|YP_007296061.1| - 0.61 10.0 5.7 1.3 8.8 1.5 2.4 2 0 0 2 2 2 0 IBR domain C1_3 PF07649.7 gi|433593320|ref|YP_007296061.1| - 5.5 7.1 6.5 2.3 8.3 1.8 2.1 2 0 0 2 2 2 0 C1-like domain zinc_ribbon_2 PF13240.1 gi|433593320|ref|YP_007296061.1| - 7.6 6.1 7.8 60 3.3 5.2 2.4 1 1 1 2 2 2 0 zinc-ribbon domain DUF2800 PF10926.3 gi|433593321|ref|YP_007296062.1| - 0.0061 15.7 0.1 0.014 14.5 0.0 1.6 1 1 0 1 1 1 1 Protein of unknown function (DUF2800) UVR PF02151.14 gi|433593321|ref|YP_007296062.1| - 0.014 14.9 1.9 0.039 13.4 1.3 1.8 1 0 0 1 1 1 0 UvrB/uvrC motif DivIC PF04977.10 gi|433593321|ref|YP_007296062.1| - 0.037 13.5 2.2 0.069 12.6 0.9 1.9 2 0 0 2 2 2 0 Septum formation initiator DUF4140 PF13600.1 gi|433593321|ref|YP_007296062.1| - 1 9.8 6.8 1.2 9.6 3.5 2.1 1 1 1 2 2 2 0 N-terminal domain of unknown function (DUF4140) HalX PF08663.5 gi|433593321|ref|YP_007296062.1| - 3.8 7.5 12.4 0.24 11.4 2.0 3.5 4 0 0 4 4 4 0 HalX domain PilJ PF13675.1 gi|433593321|ref|YP_007296062.1| - 4.8 7.5 6.2 2 8.7 0.3 2.9 3 1 0 3 3 3 0 Type IV pili methyl-accepting chemotaxis transducer N-term HEAT_2 PF13646.1 gi|433593322|ref|YP_007296063.1| - 0.0003 21.0 3.8 0.0021 18.3 2.7 2.1 1 1 0 1 1 1 1 HEAT repeats HEAT_EZ PF13513.1 gi|433593322|ref|YP_007296063.1| - 0.0057 17.1 2.0 0.13 12.8 0.1 2.7 3 1 1 4 4 4 2 HEAT-like repeat HEAT PF02985.17 gi|433593322|ref|YP_007296063.1| - 0.012 15.6 0.9 0.049 13.7 0.0 2.5 2 0 0 2 2 2 0 HEAT repeat DUF2937 PF11157.3 gi|433593322|ref|YP_007296063.1| - 0.065 12.5 1.3 0.11 11.8 0.3 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2937) TFIIB PF00382.14 gi|433593324|ref|YP_007296065.1| - 7.9e-09 35.2 0.9 6.4e-06 25.8 0.0 2.5 2 1 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|433593324|ref|YP_007296065.1| - 0.00074 18.7 1.8 0.0016 17.7 1.2 1.5 1 0 0 1 1 1 1 TFIIB zinc-binding DZR PF12773.2 gi|433593324|ref|YP_007296065.1| - 0.014 15.2 0.6 0.035 13.9 0.4 1.6 1 0 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|433593324|ref|YP_007296065.1| - 0.016 14.3 0.8 0.041 13.1 0.6 1.6 1 0 0 1 1 1 0 zinc-ribbon domain Prok-RING_1 PF14446.1 gi|433593324|ref|YP_007296065.1| - 1.1 8.9 8.2 0.25 11.1 0.8 2.2 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 TrmB PF01978.14 gi|433593325|ref|YP_007296066.1| - 0.00022 20.8 0.0 0.0028 17.3 0.0 2.2 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|433593325|ref|YP_007296066.1| - 0.0076 15.8 0.0 0.014 14.9 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_45 PF14947.1 gi|433593325|ref|YP_007296066.1| - 0.085 12.6 0.0 1.1 9.1 0.0 2.2 2 0 0 2 2 2 0 Winged helix-turn-helix HTH_5 PF01022.15 gi|433593325|ref|YP_007296066.1| - 0.13 11.9 0.0 0.26 10.9 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family PSK_trans_fac PF07704.6 gi|433593327|ref|YP_007296068.1| - 0.0076 16.8 2.7 0.028 15.1 1.9 1.9 1 1 0 1 1 1 1 Rv0623-like transcription factor Lipase_chap PF03280.9 gi|433593327|ref|YP_007296068.1| - 0.0096 15.4 0.7 0.01 15.4 0.5 1.2 1 0 0 1 1 1 1 Proteobacterial lipase chaperone protein TrmB PF01978.14 gi|433593328|ref|YP_007296069.1| - 0.00092 18.8 0.0 0.0023 17.5 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.7 gi|433593328|ref|YP_007296069.1| - 0.061 12.9 0.0 0.14 11.8 0.0 1.5 1 0 0 1 1 1 0 HTH domain HTH_20 PF12840.2 gi|433593328|ref|YP_007296069.1| - 0.081 12.7 0.0 0.34 10.7 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain DUF1192 PF06698.6 gi|433593328|ref|YP_007296069.1| - 2.7 7.8 5.5 0.3 10.9 0.3 2.1 3 0 0 3 3 3 0 Protein of unknown function (DUF1192) PIN_4 PF13638.1 gi|433593329|ref|YP_007296070.1| - 0.14 12.2 0.0 0.58 10.2 0.0 1.8 1 1 1 2 2 2 0 PIN domain CbiA PF01656.18 gi|433593330|ref|YP_007296071.1| - 4.7e-23 81.6 0.0 2.2e-22 79.4 0.0 1.8 1 1 1 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|433593330|ref|YP_007296071.1| - 5.7e-14 52.3 0.0 1.3e-13 51.1 0.0 1.6 1 0 0 1 1 1 1 AAA domain MipZ PF09140.6 gi|433593330|ref|YP_007296071.1| - 6.7e-11 41.7 0.0 1.9e-08 33.7 0.0 2.2 1 1 0 1 1 1 1 ATPase MipZ YhjQ PF06564.7 gi|433593330|ref|YP_007296071.1| - 0.00041 19.7 0.0 0.0007 19.0 0.0 1.3 1 0 0 1 1 1 1 YhjQ protein Fer4_NifH PF00142.13 gi|433593330|ref|YP_007296071.1| - 0.0008 18.6 0.0 0.0017 17.5 0.0 1.6 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family VirC1 PF07015.6 gi|433593330|ref|YP_007296071.1| - 0.0033 16.5 0.1 0.015 14.4 0.0 1.9 2 0 0 2 2 2 1 VirC1 protein ArsA_ATPase PF02374.10 gi|433593330|ref|YP_007296071.1| - 0.0063 15.5 0.0 0.018 14.1 0.0 1.8 2 0 0 2 2 2 1 Anion-transporting ATPase AAA_19 PF13245.1 gi|433593330|ref|YP_007296071.1| - 0.046 13.4 0.0 0.11 12.2 0.0 1.5 1 0 0 1 1 1 0 Part of AAA domain ATP_bind_1 PF03029.12 gi|433593330|ref|YP_007296071.1| - 0.097 12.1 0.4 1.2 8.6 0.1 2.3 2 1 0 2 2 2 0 Conserved hypothetical ATP binding protein Abhydrolase_5 PF12695.2 gi|433593330|ref|YP_007296071.1| - 0.12 12.0 0.0 0.26 11.0 0.0 1.6 1 0 0 1 1 1 0 Alpha/beta hydrolase family Daxx PF03344.10 gi|433593331|ref|YP_007296072.1| - 8.1 4.7 19.1 7.7 4.8 13.2 1.1 1 0 0 1 1 1 0 Daxx Family DUF2274 PF10038.4 gi|433593332|ref|YP_007296073.1| - 0.15 12.2 1.1 13 5.9 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2274) Cdc6_C PF09079.6 gi|433593333|ref|YP_007296074.1| - 1.4e-18 66.4 1.1 3e-18 65.3 0.1 2.1 2 0 0 2 2 2 1 CDC6, C terminal AAA_16 PF13191.1 gi|433593333|ref|YP_007296074.1| - 6.8e-12 45.7 0.5 6.9e-11 42.4 0.0 2.4 2 2 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|433593333|ref|YP_007296074.1| - 8.7e-12 45.3 0.2 4.5e-11 43.0 0.0 2.0 2 0 0 2 2 2 1 AAA domain Arch_ATPase PF01637.13 gi|433593333|ref|YP_007296074.1| - 1.7e-06 27.9 0.0 3.8e-06 26.7 0.0 1.7 1 1 0 1 1 1 1 Archaeal ATPase AAA PF00004.24 gi|433593333|ref|YP_007296074.1| - 7e-06 26.2 0.0 2e-05 24.8 0.0 1.8 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) NACHT PF05729.7 gi|433593333|ref|YP_007296074.1| - 4.3e-05 23.2 0.0 0.00013 21.7 0.0 1.8 1 1 1 2 2 2 1 NACHT domain DUF87 PF01935.12 gi|433593333|ref|YP_007296074.1| - 0.00051 19.9 1.0 1.9 8.2 0.0 3.2 3 0 0 3 3 3 1 Domain of unknown function DUF87 KAP_NTPase PF07693.9 gi|433593333|ref|YP_007296074.1| - 0.00055 19.0 0.4 0.034 13.1 0.0 2.8 2 2 1 3 3 3 1 KAP family P-loop domain Sigma54_activat PF00158.21 gi|433593333|ref|YP_007296074.1| - 0.0013 18.2 0.0 0.0029 17.1 0.0 1.6 1 0 0 1 1 1 1 Sigma-54 interaction domain T2SE PF00437.15 gi|433593333|ref|YP_007296074.1| - 0.0028 16.5 0.0 0.0061 15.4 0.0 1.5 1 0 0 1 1 1 1 Type II/IV secretion system protein DEAD PF00270.24 gi|433593333|ref|YP_007296074.1| - 0.0036 16.8 0.0 2.6 7.5 0.0 2.4 2 0 0 2 2 2 2 DEAD/DEAH box helicase AAA_17 PF13207.1 gi|433593333|ref|YP_007296074.1| - 0.0044 17.8 0.0 0.013 16.2 0.0 1.9 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|433593333|ref|YP_007296074.1| - 0.0048 17.2 0.0 0.023 15.0 0.0 2.2 2 0 0 2 2 2 1 AAA domain DUF815 PF05673.8 gi|433593333|ref|YP_007296074.1| - 0.0055 15.6 0.0 0.0096 14.8 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF815) NB-ARC PF00931.17 gi|433593333|ref|YP_007296074.1| - 0.0061 15.4 0.0 0.012 14.4 0.0 1.4 1 0 0 1 1 1 1 NB-ARC domain AAA_10 PF12846.2 gi|433593333|ref|YP_007296074.1| - 0.0061 16.0 2.0 0.064 12.6 1.3 2.2 1 1 0 1 1 1 1 AAA-like domain RNA_helicase PF00910.17 gi|433593333|ref|YP_007296074.1| - 0.0063 16.6 0.0 0.026 14.7 0.0 2.0 2 0 0 2 2 2 1 RNA helicase AAA_2 PF07724.9 gi|433593333|ref|YP_007296074.1| - 0.011 15.7 0.0 0.024 14.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain (Cdc48 subfamily) AAA_24 PF13479.1 gi|433593333|ref|YP_007296074.1| - 0.012 15.2 0.9 0.032 13.8 0.2 2.0 2 1 0 2 2 2 0 AAA domain PIF1 PF05970.9 gi|433593333|ref|YP_007296074.1| - 0.018 13.9 0.0 0.032 13.1 0.0 1.4 1 0 0 1 1 1 0 PIF1-like helicase ORC4_C PF14629.1 gi|433593333|ref|YP_007296074.1| - 0.02 14.3 0.1 0.031 13.6 0.0 1.3 1 0 0 1 1 1 0 Origin recognition complex (ORC) subunit 4 C-terminus RuvB_N PF05496.7 gi|433593333|ref|YP_007296074.1| - 0.024 13.6 0.0 0.36 9.8 0.0 2.4 2 0 0 2 2 2 0 Holliday junction DNA helicase ruvB N-terminus AAA_32 PF13654.1 gi|433593333|ref|YP_007296074.1| - 0.025 13.2 0.2 0.47 9.0 0.0 2.2 2 0 0 2 2 2 0 AAA domain DUF2075 PF09848.4 gi|433593333|ref|YP_007296074.1| - 0.03 13.3 0.0 0.053 12.4 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_5 PF07728.9 gi|433593333|ref|YP_007296074.1| - 0.036 13.7 0.1 10 5.8 0.0 2.9 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) MMR_HSR1 PF01926.18 gi|433593333|ref|YP_007296074.1| - 0.061 13.2 0.4 0.19 11.6 0.1 2.1 2 1 0 2 2 1 0 50S ribosome-binding GTPase DUF258 PF03193.11 gi|433593333|ref|YP_007296074.1| - 0.12 11.5 0.0 0.24 10.5 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function, DUF258 DZR PF12773.2 gi|433593335|ref|YP_007296076.1| - 0.63 9.8 11.7 0.32 10.8 0.4 3.5 3 1 1 4 4 4 0 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|433593335|ref|YP_007296076.1| - 0.74 9.1 11.8 0.039 13.1 1.5 3.1 4 0 0 4 4 4 0 zinc-ribbon domain HypA PF01155.14 gi|433593335|ref|YP_007296076.1| - 0.87 9.2 6.7 2.5 7.8 0.4 2.3 2 0 0 2 2 2 0 Hydrogenase expression/synthesis hypA family C1_1 PF00130.17 gi|433593335|ref|YP_007296076.1| - 1.2 8.9 5.4 16 5.2 0.5 2.8 2 1 0 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) RNA_POL_M_15KD PF02150.11 gi|433593335|ref|YP_007296076.1| - 1.9 8.2 12.5 1.4 8.6 0.1 4.3 4 0 0 4 4 4 0 RNA polymerases M/15 Kd subunit zinc_ribbon_2 PF13240.1 gi|433593335|ref|YP_007296076.1| - 2.2 7.8 11.5 0.65 9.5 0.9 3.6 3 1 0 3 3 3 0 zinc-ribbon domain zf-Mss51 PF13824.1 gi|433593335|ref|YP_007296076.1| - 4.5 7.2 7.3 37 4.2 1.9 3.3 2 1 0 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-RanBP PF00641.13 gi|433593335|ref|YP_007296076.1| - 5.1 6.2 7.5 9.5 5.4 0.1 2.8 2 1 0 2 2 2 0 Zn-finger in Ran binding protein and others TFIIB PF00382.14 gi|433593336|ref|YP_007296077.1| - 1.2e-28 98.7 0.1 3.4e-16 58.7 0.0 2.4 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|433593336|ref|YP_007296077.1| - 7.2e-13 47.6 2.3 1.4e-12 46.6 1.6 1.5 1 0 0 1 1 1 1 TFIIB zinc-binding DZR PF12773.2 gi|433593336|ref|YP_007296077.1| - 0.00069 19.3 1.0 0.0014 18.3 0.7 1.5 1 0 0 1 1 1 1 Double zinc ribbon OrfB_Zn_ribbon PF07282.6 gi|433593336|ref|YP_007296077.1| - 0.009 15.6 1.4 0.02 14.5 1.0 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain FYVE PF01363.16 gi|433593336|ref|YP_007296077.1| - 0.04 13.8 0.1 0.073 12.9 0.1 1.5 1 0 0 1 1 1 0 FYVE zinc finger Prok-RING_1 PF14446.1 gi|433593336|ref|YP_007296077.1| - 0.057 13.1 2.6 0.17 11.6 1.8 1.8 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 DUF1670 PF07900.6 gi|433593336|ref|YP_007296077.1| - 0.057 12.6 0.0 0.11 11.7 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1670) Cyclin_C PF02984.14 gi|433593336|ref|YP_007296077.1| - 0.093 12.6 0.0 1.1 9.1 0.0 2.1 2 0 0 2 2 2 0 Cyclin, C-terminal domain DUF1272 PF06906.6 gi|433593336|ref|YP_007296077.1| - 0.23 11.3 1.9 0.32 10.8 0.1 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF1272) UPF0547 PF10571.4 gi|433593336|ref|YP_007296077.1| - 0.26 11.0 1.9 0.62 9.7 1.4 1.7 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 Zn-ribbon_8 PF09723.5 gi|433593336|ref|YP_007296077.1| - 1.5 8.8 4.9 2.2 8.3 0.3 2.6 1 1 1 2 2 2 0 Zinc ribbon domain tRNA_anti-codon PF01336.20 gi|433593337|ref|YP_007296078.1| - 0.001 18.8 0.1 0.0022 17.8 0.1 1.6 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain TusA PF01206.12 gi|433593339|ref|YP_007296080.1| - 0.1 12.2 0.0 0.27 10.8 0.0 1.8 1 1 1 2 2 2 0 Sulfurtransferase TusA TrmB PF01978.14 gi|433593340|ref|YP_007296081.1| - 6.9e-07 28.8 0.0 3.7e-06 26.5 0.0 2.1 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|433593340|ref|YP_007296081.1| - 2.3e-05 23.8 0.0 5.8e-05 22.6 0.0 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_20 PF12840.2 gi|433593340|ref|YP_007296081.1| - 0.00024 20.8 0.0 0.00047 19.9 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|433593340|ref|YP_007296081.1| - 0.0029 17.2 0.0 0.0077 15.8 0.0 1.8 1 0 0 1 1 1 1 MarR family HTH_17 PF12728.2 gi|433593340|ref|YP_007296081.1| - 0.004 17.3 0.0 0.0082 16.3 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|433593340|ref|YP_007296081.1| - 0.013 14.8 0.0 0.023 14.0 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding MarR PF01047.17 gi|433593340|ref|YP_007296081.1| - 0.016 14.9 0.0 0.034 13.8 0.0 1.5 1 0 0 1 1 1 0 MarR family HTH_5 PF01022.15 gi|433593340|ref|YP_007296081.1| - 0.021 14.4 0.0 0.048 13.3 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_36 PF13730.1 gi|433593340|ref|YP_007296081.1| - 0.1 12.7 0.0 0.24 11.5 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain CENP-Q PF13094.1 gi|433593344|ref|YP_007296085.1| - 0.0085 16.1 7.6 0.0085 16.1 5.3 1.9 2 0 0 2 2 2 1 CENP-Q, a CENPA-CAD centromere complex subunit DUF904 PF06005.7 gi|433593344|ref|YP_007296085.1| - 0.027 14.7 2.6 0.065 13.5 1.8 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF904) FlxA PF14282.1 gi|433593344|ref|YP_007296085.1| - 0.041 13.8 2.6 0.086 12.7 1.8 1.5 1 0 0 1 1 1 0 FlxA-like protein Atg14 PF10186.4 gi|433593344|ref|YP_007296085.1| - 0.041 12.8 1.8 0.063 12.2 1.3 1.3 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 Gp-FAR-1 PF05823.7 gi|433593344|ref|YP_007296085.1| - 0.081 12.8 0.1 0.14 12.1 0.1 1.3 1 0 0 1 1 1 0 Nematode fatty acid retinoid binding protein (Gp-FAR-1) Prefoldin PF02996.12 gi|433593344|ref|YP_007296085.1| - 0.096 12.3 1.7 0.23 11.1 1.1 1.6 1 0 0 1 1 1 0 Prefoldin subunit DUF972 PF06156.8 gi|433593344|ref|YP_007296085.1| - 0.19 12.1 2.3 0.45 10.8 1.6 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF972) DUF1664 PF07889.7 gi|433593344|ref|YP_007296085.1| - 0.21 11.3 0.7 0.39 10.5 0.5 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) DivIC PF04977.10 gi|433593344|ref|YP_007296085.1| - 0.57 9.7 6.4 0.094 12.2 1.3 2.0 2 0 0 2 2 2 0 Septum formation initiator IncA PF04156.9 gi|433593344|ref|YP_007296085.1| - 4.9 6.6 5.3 9 5.8 3.7 1.4 1 0 0 1 1 1 0 IncA protein DUF2203 PF09969.4 gi|433593344|ref|YP_007296085.1| - 9.1 6.5 6.7 35 4.6 0.3 2.6 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2203) AAA_10 PF12846.2 gi|433593345|ref|YP_007296086.1| - 1.9e-21 76.7 0.3 2.9e-21 76.1 0.2 1.2 1 0 0 1 1 1 1 AAA-like domain TrwB_AAD_bind PF10412.4 gi|433593345|ref|YP_007296086.1| - 4.1e-09 35.5 0.0 0.00015 20.4 0.0 2.2 2 0 0 2 2 2 2 Type IV secretion-system coupling protein DNA-binding domain TraG-D_C PF12696.2 gi|433593345|ref|YP_007296086.1| - 1.1e-07 31.7 0.0 2.6e-07 30.5 0.0 1.7 1 0 0 1 1 1 1 TraM recognition site of TraD and TraG T4SS-DNA_transf PF02534.9 gi|433593345|ref|YP_007296086.1| - 1.1e-05 24.2 0.0 0.00037 19.2 0.1 2.1 2 0 0 2 2 2 1 Type IV secretory system Conjugative DNA transfer Pox_D5 PF03288.11 gi|433593345|ref|YP_007296086.1| - 0.0018 18.4 0.0 0.0038 17.4 0.0 1.5 1 0 0 1 1 1 1 Poxvirus D5 protein-like FtsK_SpoIIIE PF01580.13 gi|433593345|ref|YP_007296086.1| - 0.0024 17.3 0.0 0.0066 15.9 0.0 1.7 1 0 0 1 1 1 1 FtsK/SpoIIIE family NACHT PF05729.7 gi|433593345|ref|YP_007296086.1| - 0.02 14.5 0.0 0.076 12.6 0.0 1.9 2 0 0 2 2 2 0 NACHT domain DUF87 PF01935.12 gi|433593345|ref|YP_007296086.1| - 0.033 13.9 0.0 0.1 12.3 0.0 1.9 1 1 0 1 1 1 0 Domain of unknown function DUF87 TAT_signal PF10518.4 gi|433593346|ref|YP_007296087.1| - 0.046 13.7 1.4 0.096 12.7 1.0 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence DUF3591 PF12157.3 gi|433593346|ref|YP_007296087.1| - 0.091 11.1 0.0 0.13 10.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3591) TAT_signal PF10518.4 gi|433593347|ref|YP_007296088.1| - 0.026 14.5 1.4 0.052 13.5 1.0 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence HTH_33 PF13592.1 gi|433593348|ref|YP_007296089.1| - 4.2e-24 83.8 1.4 4.5e-22 77.3 0.0 3.3 3 0 0 3 3 3 1 Winged helix-turn helix HTH_29 PF13551.1 gi|433593348|ref|YP_007296089.1| - 9.3e-21 74.0 0.4 9.3e-21 74.0 0.2 1.8 2 0 0 2 2 2 1 Winged helix-turn helix HTH_32 PF13565.1 gi|433593348|ref|YP_007296089.1| - 6.4e-12 46.1 6.8 6.8e-11 42.8 0.2 3.0 2 1 1 3 3 3 1 Homeodomain-like domain HTH_28 PF13518.1 gi|433593348|ref|YP_007296089.1| - 2.9e-11 43.1 1.6 1.7e-10 40.6 0.4 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|433593348|ref|YP_007296089.1| - 9.2e-08 31.5 1.1 1.2e-07 31.0 0.2 1.7 2 0 0 2 2 1 1 Homeodomain-like domain HTH_Tnp_IS630 PF01710.11 gi|433593348|ref|YP_007296089.1| - 7.7e-05 22.3 0.3 0.00016 21.3 0.2 1.5 1 0 0 1 1 1 1 Transposase HTH_38 PF13936.1 gi|433593348|ref|YP_007296089.1| - 0.0003 20.2 0.1 0.0012 18.3 0.0 2.1 2 1 0 2 2 2 1 Helix-turn-helix domain Sigma70_ECF PF07638.6 gi|433593348|ref|YP_007296089.1| - 0.00076 19.1 0.1 0.0013 18.4 0.1 1.5 1 1 0 1 1 1 1 ECF sigma factor HTH_Tnp_1 PF01527.15 gi|433593348|ref|YP_007296089.1| - 0.0023 17.8 0.2 0.0023 17.8 0.2 1.9 2 0 0 2 2 2 1 Transposase DUF387 PF04079.11 gi|433593348|ref|YP_007296089.1| - 0.004 16.5 0.1 0.0073 15.6 0.1 1.5 1 0 0 1 1 1 1 Putative transcriptional regulators (Ypuh-like) HTH_11 PF08279.7 gi|433593348|ref|YP_007296089.1| - 0.0065 16.0 0.2 0.02 14.5 0.0 1.8 2 0 0 2 2 2 1 HTH domain HTH_36 PF13730.1 gi|433593348|ref|YP_007296089.1| - 0.008 16.2 0.0 0.047 13.8 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_psq PF05225.11 gi|433593348|ref|YP_007296089.1| - 0.019 14.4 0.2 0.12 11.9 0.0 2.3 2 1 0 2 2 2 0 helix-turn-helix, Psq domain HTH_Tnp_4 PF13613.1 gi|433593348|ref|YP_007296089.1| - 0.019 14.4 0.1 0.052 13.0 0.0 1.7 1 1 0 1 1 1 0 Helix-turn-helix of DDE superfamily endonuclease TrmB PF01978.14 gi|433593348|ref|YP_007296089.1| - 0.025 14.2 0.0 0.058 13.1 0.0 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|433593348|ref|YP_007296089.1| - 0.038 13.7 0.0 0.071 12.8 0.0 1.5 1 0 0 1 1 1 0 MarR family Terminase_5 PF06056.7 gi|433593348|ref|YP_007296089.1| - 0.044 13.3 0.2 0.11 12.0 0.1 1.6 1 0 0 1 1 1 0 Putative ATPase subunit of terminase (gpP-like) PadR PF03551.9 gi|433593348|ref|YP_007296089.1| - 0.06 13.1 0.2 0.13 12.0 0.1 1.5 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family HTH_17 PF12728.2 gi|433593348|ref|YP_007296089.1| - 0.08 13.2 1.2 0.13 12.4 0.0 2.1 3 0 0 3 3 1 0 Helix-turn-helix domain DUF488 PF04343.8 gi|433593348|ref|YP_007296089.1| - 0.15 12.4 2.3 0.22 11.8 0.3 2.0 2 0 0 2 2 2 0 Protein of unknown function, DUF488 HTH_3 PF01381.17 gi|433593348|ref|YP_007296089.1| - 0.22 11.4 4.6 1.3 8.8 0.0 3.6 4 1 1 5 5 4 0 Helix-turn-helix IR1-M PF12185.3 gi|433593348|ref|YP_007296089.1| - 0.51 10.1 2.9 5.6 6.7 0.0 3.0 3 0 0 3 3 3 0 Nup358/RanBP2 E3 ligase domain Uds1 PF15456.1 gi|433593348|ref|YP_007296089.1| - 2.5 8.1 5.8 4.9 7.1 0.2 2.8 3 0 0 3 3 3 0 Up-regulated During Septation DDE_3 PF13358.1 gi|433593349|ref|YP_007296090.1| - 4.3e-29 101.1 0.0 4.8e-29 100.9 0.0 1.0 1 0 0 1 1 1 1 DDE superfamily endonuclease rve PF00665.21 gi|433593349|ref|YP_007296090.1| - 0.0022 18.1 0.0 0.0025 17.9 0.0 1.3 1 0 0 1 1 1 1 Integrase core domain PAPS_reduct PF01507.14 gi|433593350|ref|YP_007296091.1| - 3.4e-15 56.2 0.0 6.3e-05 22.8 0.0 3.1 3 0 0 3 3 3 3 Phosphoadenosine phosphosulfate reductase family ATP_bind_4 PF01902.12 gi|433593350|ref|YP_007296091.1| - 0.018 14.3 0.0 0.05 12.9 0.0 1.7 2 0 0 2 2 2 0 ATP-binding region PP-binding_2 PF14573.1 gi|433593350|ref|YP_007296091.1| - 0.033 14.2 0.1 0.08 12.9 0.1 1.7 1 0 0 1 1 1 0 Acyl-carrier ATP_bind_3 PF01171.15 gi|433593350|ref|YP_007296091.1| - 0.091 12.2 0.0 0.15 11.5 0.0 1.3 1 0 0 1 1 1 0 PP-loop family UDPG_MGDP_dh_N PF03721.9 gi|433593351|ref|YP_007296092.1| - 2.6e-57 193.1 0.3 6.5e-56 188.6 0.0 2.1 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.14 gi|433593351|ref|YP_007296092.1| - 2.5e-33 114.1 0.1 4.3e-33 113.3 0.1 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.10 gi|433593351|ref|YP_007296092.1| - 5.6e-27 93.9 0.2 5.1e-26 90.8 0.0 2.4 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NAD_Gly3P_dh_N PF01210.18 gi|433593351|ref|YP_007296092.1| - 3.1e-06 27.0 0.0 2.7e-05 23.9 0.0 2.5 2 1 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 3HCDH_N PF02737.13 gi|433593351|ref|YP_007296092.1| - 9.5e-05 22.1 0.0 0.00034 20.3 0.0 2.0 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox PF00070.22 gi|433593351|ref|YP_007296092.1| - 0.0042 17.4 0.1 0.042 14.2 0.0 2.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase ApbA PF02558.11 gi|433593351|ref|YP_007296092.1| - 0.011 15.2 0.0 0.021 14.2 0.0 1.5 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA AlaDh_PNT_C PF01262.16 gi|433593351|ref|YP_007296092.1| - 0.018 14.6 0.0 0.034 13.7 0.0 1.5 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain DAO PF01266.19 gi|433593351|ref|YP_007296092.1| - 0.078 11.8 2.1 0.2 10.5 0.2 2.3 2 1 0 3 3 3 0 FAD dependent oxidoreductase WYL PF13280.1 gi|433593352|ref|YP_007296093.1| - 5.9e-05 22.9 0.0 9.5e-05 22.3 0.0 1.3 1 1 0 1 1 1 1 WYL domain NTP_transferase PF00483.18 gi|433593353|ref|YP_007296094.1| - 1e-42 146.1 0.0 1.2e-42 145.9 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|433593353|ref|YP_007296094.1| - 4.4e-16 59.3 0.0 5e-16 59.1 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.14 gi|433593353|ref|YP_007296094.1| - 5.2e-06 26.1 0.0 1e-05 25.1 0.0 1.7 1 1 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Glycos_transf_2 PF00535.21 gi|433593353|ref|YP_007296094.1| - 0.001 18.7 0.1 0.0013 18.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Polysacc_synt PF01943.12 gi|433593354|ref|YP_007296095.1| - 1.6e-22 80.1 17.6 1.6e-22 80.1 12.2 2.2 2 0 0 2 2 2 2 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.1 gi|433593354|ref|YP_007296095.1| - 2.5e-18 66.2 11.2 2.5e-18 66.2 7.7 4.2 4 1 1 5 5 5 2 Polysaccharide biosynthesis C-terminal domain Polysacc_synt_3 PF13440.1 gi|433593354|ref|YP_007296095.1| - 1e-10 41.5 23.9 1e-10 41.5 16.6 2.3 2 0 0 2 2 2 2 Polysaccharide biosynthesis protein MVIN PF03023.9 gi|433593354|ref|YP_007296095.1| - 2.1e-06 26.4 9.2 2.1e-06 26.4 6.4 2.7 1 1 0 2 2 2 1 MviN-like protein FAD_binding_4 PF01565.18 gi|433593355|ref|YP_007296096.1| - 1.9e-15 56.5 0.0 2.8e-15 56.0 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain MurB_C PF02873.11 gi|433593355|ref|YP_007296096.1| - 0.046 13.4 0.1 0.4 10.4 0.1 2.1 1 1 0 1 1 1 0 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain PS_pyruv_trans PF04230.8 gi|433593356|ref|YP_007296097.1| - 2.8e-29 102.7 0.1 3.7e-29 102.3 0.0 1.2 1 0 0 1 1 1 1 Polysaccharide pyruvyl transferase MipZ PF09140.6 gi|433593356|ref|YP_007296097.1| - 0.034 13.2 0.0 0.065 12.3 0.0 1.4 1 0 0 1 1 1 0 ATPase MipZ Glycos_transf_2 PF00535.21 gi|433593357|ref|YP_007296098.1| - 1.7e-29 102.6 0.2 3e-29 101.8 0.1 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|433593357|ref|YP_007296098.1| - 1e-13 51.6 0.0 1.5e-13 51.1 0.0 1.3 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|433593357|ref|YP_007296098.1| - 4.7e-08 32.4 0.0 6.1e-08 32.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 DDE_Tnp_IS66 PF03050.9 gi|433593358|ref|YP_007296099.1| - 2.8e-52 177.5 0.0 2.8e-52 177.5 0.0 2.1 2 0 0 2 2 2 1 Transposase IS66 family SlyX PF04102.7 gi|433593358|ref|YP_007296099.1| - 8.4e-09 35.6 7.0 2e-08 34.4 4.8 1.7 1 0 0 1 1 1 1 SlyX zf-IS66 PF13005.2 gi|433593358|ref|YP_007296099.1| - 0.00066 19.5 5.8 0.00066 19.5 4.0 2.5 2 0 0 2 2 1 1 zinc-finger binding domain of transposase IS66 Atg14 PF10186.4 gi|433593358|ref|YP_007296099.1| - 0.0012 17.9 8.2 0.0019 17.1 5.7 1.3 1 0 0 1 1 1 1 UV radiation resistance protein and autophagy-related subunit 14 Fmp27_WPPW PF10359.4 gi|433593358|ref|YP_007296099.1| - 0.0026 16.2 7.0 0.0037 15.7 4.8 1.1 1 0 0 1 1 1 1 RNA pol II promoter Fmp27 protein domain MscS_porin PF12795.2 gi|433593358|ref|YP_007296099.1| - 0.0057 16.0 8.0 0.0091 15.3 5.6 1.3 1 0 0 1 1 1 1 Mechanosensitive ion channel porin domain DUF16 PF01519.11 gi|433593358|ref|YP_007296099.1| - 0.0057 16.8 5.1 0.013 15.7 3.6 1.5 1 0 0 1 1 1 1 Protein of unknown function DUF16 ATG16 PF08614.6 gi|433593358|ref|YP_007296099.1| - 0.013 15.3 10.5 0.025 14.4 7.2 1.4 1 0 0 1 1 1 0 Autophagy protein 16 (ATG16) Cortex-I_coil PF09304.5 gi|433593358|ref|YP_007296099.1| - 0.016 15.1 8.9 0.034 14.1 6.2 1.4 1 0 0 1 1 1 0 Cortexillin I, coiled coil IncA PF04156.9 gi|433593358|ref|YP_007296099.1| - 0.02 14.4 12.1 0.045 13.3 8.4 1.5 1 0 0 1 1 1 0 IncA protein HSBP1 PF06825.7 gi|433593358|ref|YP_007296099.1| - 0.022 14.3 6.1 0.49 10.0 1.7 2.5 2 0 0 2 2 2 0 Heat shock factor binding protein 1 DZR PF12773.2 gi|433593358|ref|YP_007296099.1| - 0.028 14.2 2.8 0.069 12.9 2.0 1.6 1 0 0 1 1 1 0 Double zinc ribbon AAA_13 PF13166.1 gi|433593358|ref|YP_007296099.1| - 0.039 12.4 7.5 0.053 11.9 5.2 1.1 1 0 0 1 1 1 0 AAA domain Cast PF10174.4 gi|433593358|ref|YP_007296099.1| - 0.045 11.7 10.2 0.063 11.3 7.0 1.1 1 0 0 1 1 1 0 RIM-binding protein of the cytomatrix active zone GAS PF13851.1 gi|433593358|ref|YP_007296099.1| - 0.066 12.3 9.5 0.11 11.6 6.6 1.3 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding DDE_Tnp_IS240 PF13610.1 gi|433593358|ref|YP_007296099.1| - 0.074 13.0 3.1 0.19 11.6 0.0 2.5 2 1 0 2 2 2 0 DDE domain Spc7 PF08317.6 gi|433593358|ref|YP_007296099.1| - 0.084 11.5 8.5 0.17 10.5 5.9 1.4 1 0 0 1 1 1 0 Spc7 kinetochore protein Mnd1 PF03962.10 gi|433593358|ref|YP_007296099.1| - 0.087 12.4 9.9 0.26 10.9 6.8 1.7 1 0 0 1 1 1 0 Mnd1 family DUF3552 PF12072.3 gi|433593358|ref|YP_007296099.1| - 0.089 11.9 15.5 0.15 11.2 10.7 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3552) TMF_DNA_bd PF12329.3 gi|433593358|ref|YP_007296099.1| - 0.11 12.3 12.3 0.25 11.1 8.5 1.6 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding TMCO5 PF14992.1 gi|433593358|ref|YP_007296099.1| - 0.14 11.3 8.7 0.23 10.5 6.0 1.3 1 0 0 1 1 1 0 TMCO5 family Fib_alpha PF08702.5 gi|433593358|ref|YP_007296099.1| - 0.14 12.2 5.0 0.31 11.1 3.5 1.5 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family FliD_C PF07195.7 gi|433593358|ref|YP_007296099.1| - 0.17 11.1 4.2 0.31 10.3 2.9 1.4 1 0 0 1 1 1 0 Flagellar hook-associated protein 2 C-terminus Flagellin_C PF00700.16 gi|433593358|ref|YP_007296099.1| - 0.24 11.5 1.8 0.48 10.6 1.3 1.4 1 0 0 1 1 1 0 Bacterial flagellin C-terminal helical region Allexi_40kDa PF05549.6 gi|433593358|ref|YP_007296099.1| - 0.27 10.5 2.8 0.46 9.7 1.9 1.3 1 0 0 1 1 1 0 Allexivirus 40kDa protein Fzo_mitofusin PF04799.8 gi|433593358|ref|YP_007296099.1| - 0.36 10.1 3.5 0.67 9.3 2.5 1.3 1 0 0 1 1 1 0 fzo-like conserved region DUF3584 PF12128.3 gi|433593358|ref|YP_007296099.1| - 0.42 7.8 8.1 0.62 7.3 5.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) DUF812 PF05667.6 gi|433593358|ref|YP_007296099.1| - 0.44 8.9 8.7 0.65 8.4 6.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF812) DASH_Spc34 PF08657.5 gi|433593358|ref|YP_007296099.1| - 0.49 10.0 14.2 2.1 7.9 6.7 2.4 1 1 1 2 2 2 0 DASH complex subunit Spc34 COG2 PF06148.6 gi|433593358|ref|YP_007296099.1| - 0.61 9.9 5.2 1.1 9.0 3.6 1.4 1 0 0 1 1 1 0 COG (conserved oligomeric Golgi) complex component, COG2 Med9 PF07544.8 gi|433593358|ref|YP_007296099.1| - 0.89 9.3 19.2 12 5.7 7.6 3.2 2 1 1 3 3 3 0 RNA polymerase II transcription mediator complex subunit 9 DUF536 PF04394.9 gi|433593358|ref|YP_007296099.1| - 0.93 9.2 15.4 1.6 8.4 10.7 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF536 MIF4G_like_2 PF09090.6 gi|433593358|ref|YP_007296099.1| - 1 8.5 5.5 0.96 8.6 2.9 1.6 2 0 0 2 2 1 0 MIF4G like DUF1465 PF07323.7 gi|433593358|ref|YP_007296099.1| - 1.1 8.8 7.1 2.1 7.8 1.7 2.9 3 0 0 3 3 2 0 Protein of unknown function (DUF1465) DUF1664 PF07889.7 gi|433593358|ref|YP_007296099.1| - 1.8 8.3 4.7 3.8 7.3 3.2 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) V_ATPase_I PF01496.14 gi|433593358|ref|YP_007296099.1| - 2.5 5.8 6.5 3.5 5.3 4.5 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family FemAB PF02388.11 gi|433593358|ref|YP_007296099.1| - 3 6.4 6.9 4.3 5.8 4.8 1.1 1 0 0 1 1 1 0 FemAB family TMPIT PF07851.8 gi|433593358|ref|YP_007296099.1| - 3.8 6.4 4.1 6 5.8 2.9 1.2 1 0 0 1 1 1 0 TMPIT-like protein BTV_NS2 PF04514.7 gi|433593358|ref|YP_007296099.1| - 4 6.2 9.8 6.3 5.5 6.8 1.2 1 0 0 1 1 1 0 Bluetongue virus non-structural protein NS2 DUF3450 PF11932.3 gi|433593358|ref|YP_007296099.1| - 4.6 6.4 12.1 0.89 8.7 5.6 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3450) DUF4337 PF14235.1 gi|433593358|ref|YP_007296099.1| - 5.5 6.8 6.2 9.8 5.9 4.3 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4337) DUF4446 PF14584.1 gi|433593358|ref|YP_007296099.1| - 9 6.1 6.0 19 5.0 4.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF4446) Glycos_transf_1 PF00534.15 gi|433593360|ref|YP_007296101.1| - 1.3e-19 70.2 0.0 2.1e-19 69.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|433593360|ref|YP_007296101.1| - 5.1e-17 62.2 0.1 9.5e-17 61.4 0.1 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|433593360|ref|YP_007296101.1| - 0.066 13.4 0.0 0.15 12.3 0.0 1.6 1 0 0 1 1 1 0 Glycosyl transferases group 1 DUF2206 PF09971.4 gi|433593361|ref|YP_007296102.1| - 1.1e-16 60.5 5.1 1.1e-16 60.5 3.6 2.8 2 1 0 2 2 2 1 Predicted membrane protein (DUF2206) DUF1616 PF07760.6 gi|433593361|ref|YP_007296102.1| - 2.1e-06 27.0 12.0 2.1e-06 27.0 8.3 2.9 3 0 0 3 3 3 1 Protein of unknown function (DUF1616) PMT_2 PF13231.1 gi|433593361|ref|YP_007296102.1| - 0.0012 18.8 11.3 0.0012 18.8 7.8 5.1 4 1 1 5 5 5 1 Dolichyl-phosphate-mannose-protein mannosyltransferase Glycos_transf_1 PF00534.15 gi|433593362|ref|YP_007296103.1| - 7.7e-20 71.0 0.0 1.6e-19 70.0 0.0 1.5 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|433593362|ref|YP_007296103.1| - 4.1e-16 59.5 0.0 6.8e-16 58.8 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|433593362|ref|YP_007296103.1| - 9.4e-11 41.7 0.0 1.4e-10 41.1 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.1 gi|433593362|ref|YP_007296103.1| - 7.7e-08 32.5 0.0 3.1e-07 30.5 0.0 2.0 3 0 0 3 3 3 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|433593362|ref|YP_007296103.1| - 6.2e-06 26.0 0.0 1.4e-05 24.9 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferase 4-like DUF1949 PF09186.6 gi|433593362|ref|YP_007296103.1| - 0.0088 15.6 1.4 1.7 8.2 0.0 3.5 4 0 0 4 4 4 1 Domain of unknown function (DUF1949) Glycos_transf_1 PF00534.15 gi|433593363|ref|YP_007296104.1| - 4.3e-46 156.4 0.0 6.5e-46 155.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|433593363|ref|YP_007296104.1| - 2e-26 92.7 0.2 3e-26 92.2 0.1 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.1 gi|433593363|ref|YP_007296104.1| - 4.1e-23 82.0 0.0 8e-23 81.0 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|433593363|ref|YP_007296104.1| - 6.7e-21 75.0 0.0 1.5e-20 73.9 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.1 gi|433593363|ref|YP_007296104.1| - 1.2e-11 44.6 0.0 3.5e-11 43.2 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|433593363|ref|YP_007296104.1| - 1.5e-09 37.7 0.0 2.3e-09 37.2 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_transf_5 PF08323.6 gi|433593363|ref|YP_007296104.1| - 0.018 14.5 0.1 0.14 11.6 0.0 2.0 1 1 1 2 2 2 0 Starch synthase catalytic domain F420_oxidored PF03807.12 gi|433593363|ref|YP_007296104.1| - 0.066 13.6 0.0 0.88 10.0 0.0 2.5 3 0 0 3 3 3 0 NADP oxidoreductase coenzyme F420-dependent YflT PF11181.3 gi|433593363|ref|YP_007296104.1| - 0.18 11.9 0.8 1 9.5 0.0 2.3 2 0 0 2 2 2 0 Heat induced stress protein YflT Sulfatase PF00884.18 gi|433593364|ref|YP_007296105.1| - 2.9e-45 154.7 0.3 3.9e-45 154.3 0.2 1.1 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.17 gi|433593364|ref|YP_007296105.1| - 1.7e-11 44.1 0.1 4.3e-05 23.0 0.0 2.3 2 0 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase DUF229 PF02995.12 gi|433593364|ref|YP_007296105.1| - 0.00017 20.2 0.0 0.00035 19.1 0.0 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF229) Metalloenzyme PF01676.13 gi|433593364|ref|YP_007296105.1| - 0.00046 19.6 0.1 3 7.1 0.0 3.1 3 0 0 3 3 3 2 Metalloenzyme superfamily Glycos_transf_1 PF00534.15 gi|433593365|ref|YP_007296106.1| - 5.6e-31 107.2 0.0 8.1e-31 106.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|433593365|ref|YP_007296106.1| - 4.5e-20 72.3 4.1 4.5e-20 72.3 2.8 2.3 3 0 0 3 3 3 1 Glycosyl transferase 4-like domain Glyco_trans_1_4 PF13692.1 gi|433593365|ref|YP_007296106.1| - 7.6e-18 64.9 0.4 4.3e-17 62.5 0.0 2.1 2 1 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|433593365|ref|YP_007296106.1| - 1.7e-15 57.1 0.2 7.7e-15 55.0 0.1 1.9 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_2 PF13477.1 gi|433593365|ref|YP_007296106.1| - 0.012 15.4 0.0 0.02 14.7 0.0 1.3 1 0 0 1 1 1 0 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.1 gi|433593365|ref|YP_007296106.1| - 0.013 15.7 0.1 0.061 13.5 0.0 2.1 2 1 0 2 2 2 0 Glycosyl transferases group 1 DUF1111 PF06537.6 gi|433593365|ref|YP_007296106.1| - 0.071 11.3 0.5 1.4 7.1 0.0 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF1111) OrfB_IS605 PF01385.14 gi|433593366|ref|YP_007296107.1| - 1.2e-64 217.8 0.0 1.6e-64 217.4 0.0 1.2 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|433593366|ref|YP_007296107.1| - 7.4e-16 57.5 0.1 1.4e-15 56.7 0.1 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain MCM PF00493.18 gi|433593370|ref|YP_007296111.1| - 3.6e-106 354.6 0.0 4.8e-106 354.3 0.0 1.1 1 0 0 1 1 1 1 MCM2/3/5 family MCM_N PF14551.1 gi|433593370|ref|YP_007296111.1| - 5.4e-12 46.2 2.1 3e-11 43.8 0.1 2.8 2 1 0 2 2 2 1 MCM N-terminal domain Mg_chelatase PF01078.16 gi|433593370|ref|YP_007296111.1| - 2.4e-10 39.9 0.0 1.8e-05 23.9 0.0 2.5 1 1 1 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_5 PF07728.9 gi|433593370|ref|YP_007296111.1| - 7e-09 35.5 0.0 1.9e-08 34.1 0.0 1.8 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) Sigma54_activat PF00158.21 gi|433593370|ref|YP_007296111.1| - 0.00065 19.2 0.0 0.0026 17.2 0.0 1.9 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA PF00004.24 gi|433593370|ref|YP_007296111.1| - 0.0014 18.8 0.1 0.0059 16.8 0.0 2.1 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|433593370|ref|YP_007296111.1| - 0.0018 18.2 3.4 0.0031 17.5 0.1 2.7 2 2 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|433593370|ref|YP_007296111.1| - 0.0021 18.1 0.1 0.034 14.2 0.1 2.8 1 1 0 1 1 1 1 AAA domain RuvB_N PF05496.7 gi|433593370|ref|YP_007296111.1| - 0.0073 15.3 0.0 0.039 12.9 0.0 2.0 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_29 PF13555.1 gi|433593370|ref|YP_007296111.1| - 0.01 15.3 0.0 0.035 13.6 0.0 1.9 1 0 0 1 1 1 0 P-loop containing region of AAA domain FtsK_SpoIIIE PF01580.13 gi|433593370|ref|YP_007296111.1| - 0.028 13.9 2.6 0.087 12.2 0.0 2.5 2 1 0 2 2 2 0 FtsK/SpoIIIE family ABC_tran PF00005.22 gi|433593370|ref|YP_007296111.1| - 0.031 14.5 0.1 0.27 11.5 0.0 2.4 2 1 0 2 2 2 0 ABC transporter NACHT PF05729.7 gi|433593370|ref|YP_007296111.1| - 0.058 13.0 0.0 0.12 11.9 0.0 1.5 1 0 0 1 1 1 0 NACHT domain Miro PF08477.8 gi|433593370|ref|YP_007296111.1| - 0.06 13.8 0.0 0.24 11.8 0.0 2.1 2 0 0 2 2 1 0 Miro-like protein AAA_19 PF13245.1 gi|433593370|ref|YP_007296111.1| - 0.075 12.7 0.1 0.33 10.7 0.1 2.1 1 0 0 1 1 1 0 Part of AAA domain RPA_C PF08784.6 gi|433593370|ref|YP_007296111.1| - 0.089 13.2 0.1 0.23 11.9 0.1 1.7 1 0 0 1 1 1 0 Replication protein A C terminal Zn-ribbon_8 PF09723.5 gi|433593370|ref|YP_007296111.1| - 0.099 12.6 3.2 0.28 11.1 2.2 1.8 1 0 0 1 1 1 0 Zinc ribbon domain AAA_10 PF12846.2 gi|433593370|ref|YP_007296111.1| - 3.9 6.8 7.3 3.1 7.1 2.1 2.5 2 1 0 2 2 2 0 AAA-like domain HALZ PF02183.13 gi|433593371|ref|YP_007296112.1| - 2.4e-05 23.9 1.2 6.7e-05 22.5 0.5 2.0 1 1 0 1 1 1 1 Homeobox associated leucine zipper DivIC PF04977.10 gi|433593371|ref|YP_007296112.1| - 0.0025 17.2 2.3 0.0025 17.2 1.6 3.0 1 1 2 3 3 3 1 Septum formation initiator TMF_DNA_bd PF12329.3 gi|433593371|ref|YP_007296112.1| - 0.0044 16.7 7.5 0.0044 16.7 5.2 2.4 2 1 1 3 3 2 1 TATA element modulatory factor 1 DNA binding bZIP_1 PF00170.16 gi|433593371|ref|YP_007296112.1| - 0.0057 16.5 0.7 0.0057 16.5 0.5 3.1 2 1 1 3 3 3 2 bZIP transcription factor FlaC_arch PF05377.6 gi|433593371|ref|YP_007296112.1| - 0.013 15.3 1.5 0.12 12.2 1.1 2.3 1 1 0 1 1 1 0 Flagella accessory protein C (FlaC) DUF972 PF06156.8 gi|433593371|ref|YP_007296112.1| - 0.025 14.9 6.8 0.11 12.8 4.7 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF972) Rootletin PF15035.1 gi|433593371|ref|YP_007296112.1| - 0.027 14.4 16.8 0.024 14.6 9.5 1.9 1 1 1 2 2 2 0 Ciliary rootlet component, centrosome cohesion D5_N PF08706.6 gi|433593371|ref|YP_007296112.1| - 0.028 14.4 3.4 0.63 10.1 2.3 2.1 1 1 0 1 1 1 0 D5 N terminal like Mto2_bdg PF12808.2 gi|433593371|ref|YP_007296112.1| - 0.034 14.2 3.9 0.034 14.2 2.7 2.7 2 1 1 3 3 3 0 Micro-tubular organiser Mto1 C-term Mto2-binding region BLOC1_2 PF10046.4 gi|433593371|ref|YP_007296112.1| - 0.035 14.2 2.7 1.5 9.0 0.1 2.6 1 1 2 3 3 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF2730 PF10805.3 gi|433593371|ref|YP_007296112.1| - 0.038 13.7 2.0 0.059 13.1 1.2 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2730) CENP-F_leu_zip PF10473.4 gi|433593371|ref|YP_007296112.1| - 0.041 13.7 13.2 0.11 12.3 9.2 1.8 1 1 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Seadorna_VP6 PF07407.6 gi|433593371|ref|YP_007296112.1| - 0.049 12.3 2.4 0.064 12.0 1.7 1.1 1 0 0 1 1 1 0 Seadornavirus VP6 protein NPV_P10 PF05531.7 gi|433593371|ref|YP_007296112.1| - 0.057 13.6 0.3 1.6 9.0 0.1 2.2 1 1 1 2 2 2 0 Nucleopolyhedrovirus P10 protein Gp58 PF07902.6 gi|433593371|ref|YP_007296112.1| - 0.095 10.8 0.7 0.11 10.7 0.5 1.1 1 0 0 1 1 1 0 gp58-like protein DUF2353 PF09789.4 gi|433593371|ref|YP_007296112.1| - 0.099 11.8 11.3 0.13 11.4 7.9 1.1 1 0 0 1 1 1 0 Uncharacterized coiled-coil protein (DUF2353) HAUS5 PF14817.1 gi|433593371|ref|YP_007296112.1| - 0.11 11.0 11.3 0.15 10.5 7.8 1.2 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 5 DUF3450 PF11932.3 gi|433593371|ref|YP_007296112.1| - 0.19 10.9 4.9 0.31 10.2 3.4 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3450) Cep57_CLD_2 PF14197.1 gi|433593371|ref|YP_007296112.1| - 0.22 11.4 15.1 0.04 13.8 5.4 2.6 2 1 0 2 2 2 0 Centrosome localisation domain of PPC89 COG2 PF06148.6 gi|433593371|ref|YP_007296112.1| - 0.33 10.8 3.0 0.54 10.1 0.7 2.0 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 PHTB1_C PF14728.1 gi|433593371|ref|YP_007296112.1| - 0.41 9.3 2.0 0.54 8.9 1.4 1.1 1 0 0 1 1 1 0 PTHB1 C-terminus TBPIP PF07106.8 gi|433593371|ref|YP_007296112.1| - 0.46 10.0 7.8 0.55 9.7 4.8 1.5 1 1 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) PilJ PF13675.1 gi|433593371|ref|YP_007296112.1| - 0.71 10.2 6.6 0.1 12.8 1.7 1.7 2 0 0 2 2 2 0 Type IV pili methyl-accepting chemotaxis transducer N-term GAS PF13851.1 gi|433593371|ref|YP_007296112.1| - 0.79 8.8 10.6 0.067 12.3 1.4 2.1 1 1 0 2 2 2 0 Growth-arrest specific micro-tubule binding Cep57_MT_bd PF06657.8 gi|433593371|ref|YP_007296112.1| - 0.8 9.6 7.1 3.2 7.7 0.1 3.0 2 1 0 2 2 2 0 Centrosome microtubule-binding domain of Cep57 APG6 PF04111.7 gi|433593371|ref|YP_007296112.1| - 0.86 8.5 14.3 1.6 7.7 9.9 1.5 1 1 0 1 1 1 0 Autophagy protein Apg6 DUF4515 PF14988.1 gi|433593371|ref|YP_007296112.1| - 0.95 9.0 12.1 0.024 14.3 2.8 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF4515) FUSC PF04632.7 gi|433593371|ref|YP_007296112.1| - 0.97 7.7 5.6 1.1 7.6 3.9 1.0 1 0 0 1 1 1 0 Fusaric acid resistance protein family DivIVA PF05103.8 gi|433593371|ref|YP_007296112.1| - 1.3 9.0 11.3 0.41 10.7 5.4 1.9 1 1 1 2 2 2 0 DivIVA protein Prefoldin_2 PF01920.15 gi|433593371|ref|YP_007296112.1| - 1.6 8.5 9.6 0.67 9.7 0.7 2.7 1 1 1 2 2 2 0 Prefoldin subunit Spc7 PF08317.6 gi|433593371|ref|YP_007296112.1| - 1.7 7.2 11.0 1.4 7.5 6.7 1.4 1 1 0 1 1 1 0 Spc7 kinetochore protein IncA PF04156.9 gi|433593371|ref|YP_007296112.1| - 1.7 8.2 19.0 7.8 6.0 13.2 1.8 1 1 0 1 1 1 0 IncA protein Striatin PF08232.7 gi|433593371|ref|YP_007296112.1| - 1.9 8.7 12.4 0.56 10.5 6.5 1.7 1 1 1 2 2 1 0 Striatin family SPX PF03105.14 gi|433593371|ref|YP_007296112.1| - 2.3 7.9 7.5 2.6 7.7 5.2 1.1 1 0 0 1 1 1 0 SPX domain bZIP_Maf PF03131.12 gi|433593371|ref|YP_007296112.1| - 3.7 7.9 10.8 0.15 12.4 1.0 2.5 2 1 1 3 3 2 0 bZIP Maf transcription factor V_ATPase_I PF01496.14 gi|433593371|ref|YP_007296112.1| - 3.8 5.2 5.4 4.2 5.1 3.8 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family DUF812 PF05667.6 gi|433593371|ref|YP_007296112.1| - 3.9 5.8 12.5 0.38 9.1 4.1 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF812) TSC22 PF01166.13 gi|433593371|ref|YP_007296112.1| - 4.4 7.3 6.6 0.67 9.9 1.6 2.0 2 1 0 2 2 1 0 TSC-22/dip/bun family Seryl_tRNA_N PF02403.17 gi|433593371|ref|YP_007296112.1| - 5.1 7.1 12.0 0.098 12.6 0.9 2.3 1 1 1 2 2 2 0 Seryl-tRNA synthetase N-terminal domain DUF4140 PF13600.1 gi|433593371|ref|YP_007296112.1| - 5.9 7.3 18.3 1.3 9.5 1.3 3.2 2 1 1 3 3 3 0 N-terminal domain of unknown function (DUF4140) AAA_13 PF13166.1 gi|433593371|ref|YP_007296112.1| - 7.2 4.9 9.2 4 5.7 4.5 1.6 1 1 1 2 2 2 0 AAA domain HTH_45 PF14947.1 gi|433593372|ref|YP_007296113.1| - 6.5e-08 32.2 0.0 0.00031 20.5 0.0 2.8 2 1 1 3 3 3 2 Winged helix-turn-helix HTH_24 PF13412.1 gi|433593372|ref|YP_007296113.1| - 7.6e-06 25.2 0.5 0.07 12.5 0.1 2.6 2 1 0 2 2 2 2 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|433593372|ref|YP_007296113.1| - 4.6e-05 22.9 0.0 0.003 17.1 0.0 2.9 2 1 1 3 3 3 1 MarR family HTH_23 PF13384.1 gi|433593372|ref|YP_007296113.1| - 0.0003 20.3 0.0 0.04 13.5 0.0 2.3 2 0 0 2 2 2 1 Homeodomain-like domain DUF2250 PF10007.4 gi|433593372|ref|YP_007296113.1| - 0.0017 18.1 0.0 0.033 14.0 0.0 2.5 2 1 0 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_20 PF12840.2 gi|433593372|ref|YP_007296113.1| - 0.0055 16.4 0.0 0.089 12.6 0.0 2.5 2 0 0 2 2 2 1 Helix-turn-helix domain DUF505 PF04458.7 gi|433593372|ref|YP_007296113.1| - 0.007 14.5 0.0 0.12 10.5 0.0 1.9 1 1 1 2 2 2 1 Protein of unknown function (DUF505) HTH_27 PF13463.1 gi|433593372|ref|YP_007296113.1| - 0.0073 16.5 0.1 0.026 14.8 0.0 2.0 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_5 PF01022.15 gi|433593372|ref|YP_007296113.1| - 0.016 14.8 0.0 0.036 13.7 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_38 PF13936.1 gi|433593372|ref|YP_007296113.1| - 0.021 14.3 0.0 1.5 8.4 0.0 2.6 2 0 0 2 2 2 0 Helix-turn-helix domain Fe_dep_repress PF01325.14 gi|433593372|ref|YP_007296113.1| - 0.021 14.7 0.0 0.044 13.7 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain Imm37 PF15598.1 gi|433593372|ref|YP_007296113.1| - 0.029 14.2 0.0 0.065 13.0 0.0 1.6 1 0 0 1 1 1 0 Immunity protein 37 MarR PF01047.17 gi|433593372|ref|YP_007296113.1| - 0.042 13.5 0.0 8.9 6.1 0.0 2.4 2 0 0 2 2 2 0 MarR family Rrf2 PF02082.15 gi|433593372|ref|YP_007296113.1| - 0.048 13.7 0.0 0.18 11.9 0.0 1.9 2 0 0 2 2 2 0 Transcriptional regulator Ilm1 PF10311.4 gi|433593373|ref|YP_007296114.1| - 0.042 13.3 0.1 0.062 12.7 0.1 1.2 1 0 0 1 1 1 0 Increased loss of mitochondrial DNA protein 1 HTH_29 PF13551.1 gi|433593374|ref|YP_007296115.1| - 3.2e-14 53.0 0.0 2.5e-13 50.1 0.0 2.4 2 1 1 3 3 3 1 Winged helix-turn helix DDE_3 PF13358.1 gi|433593374|ref|YP_007296115.1| - 1.6e-12 47.4 0.1 3.7e-12 46.2 0.0 1.6 2 0 0 2 2 2 1 DDE superfamily endonuclease HTH_32 PF13565.1 gi|433593374|ref|YP_007296115.1| - 1.9e-11 44.6 0.6 2.7e-10 40.8 0.0 2.6 2 0 0 2 2 2 1 Homeodomain-like domain HTH_23 PF13384.1 gi|433593374|ref|YP_007296115.1| - 9.7e-09 34.6 0.0 3.5e-08 32.8 0.0 2.0 2 0 0 2 2 2 1 Homeodomain-like domain HTH_33 PF13592.1 gi|433593374|ref|YP_007296115.1| - 2.9e-08 33.1 0.0 8.3e-07 28.4 0.0 2.4 2 0 0 2 2 2 1 Winged helix-turn helix HTH_28 PF13518.1 gi|433593374|ref|YP_007296115.1| - 6.6e-06 26.0 0.0 1.7e-05 24.7 0.0 1.7 2 0 0 2 2 1 1 Helix-turn-helix domain rve PF00665.21 gi|433593374|ref|YP_007296115.1| - 6.8e-05 22.9 0.0 0.00013 22.0 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain DDE_1 PF03184.14 gi|433593374|ref|YP_007296115.1| - 0.0006 19.0 0.0 0.00098 18.3 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_7 PF02796.10 gi|433593374|ref|YP_007296115.1| - 0.0015 18.3 0.1 0.0034 17.2 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase Sigma70_r4 PF04545.11 gi|433593374|ref|YP_007296115.1| - 0.0035 16.6 0.0 0.011 14.9 0.0 1.9 1 0 0 1 1 1 1 Sigma-70, region 4 DUF746 PF05344.6 gi|433593374|ref|YP_007296115.1| - 0.0099 15.3 0.0 0.029 13.8 0.0 1.8 1 0 0 1 1 1 1 Domain of Unknown Function (DUF746) LZ_Tnp_IS481 PF13011.1 gi|433593374|ref|YP_007296115.1| - 0.041 14.2 0.0 0.09 13.1 0.0 1.5 1 0 0 1 1 1 0 leucine-zipper of insertion element IS481 Sigma70_r4_2 PF08281.7 gi|433593374|ref|YP_007296115.1| - 0.048 13.1 0.1 0.17 11.3 0.0 1.9 2 0 0 2 2 2 0 Sigma-70, region 4 Phage_integrase PF00589.17 gi|433593375|ref|YP_007296116.1| - 6.6e-05 22.6 0.3 0.00058 19.5 0.2 2.3 1 1 0 1 1 1 1 Phage integrase family Phage_int_SAM_1 PF02899.12 gi|433593375|ref|YP_007296116.1| - 0.026 14.6 2.9 0.55 10.4 0.2 2.9 2 1 1 3 3 3 0 Phage integrase, N-terminal SAM-like domain RAMPs PF03787.10 gi|433593378|ref|YP_007296119.1| - 0.014 15.2 0.6 0.13 12.1 0.0 2.5 2 1 0 2 2 2 0 RAMP superfamily TraC PF07820.7 gi|433593380|ref|YP_007296121.1| - 0.13 12.4 0.3 0.18 12.0 0.2 1.4 1 1 0 1 1 1 0 TraC-like protein Ag332 PF04671.7 gi|433593381|ref|YP_007296122.1| - 0.0027 17.3 0.7 0.0053 16.4 0.5 1.5 1 0 0 1 1 1 1 Erythrocyte membrane-associated giant protein antigen 332 TAT_signal PF10518.4 gi|433593381|ref|YP_007296122.1| - 0.016 15.1 2.8 0.034 14.1 1.9 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence MarR_2 PF12802.2 gi|433593383|ref|YP_007296124.1| - 1.1e-07 31.4 0.0 1.5e-07 31.0 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|433593383|ref|YP_007296124.1| - 2.9e-05 24.3 0.0 4.1e-05 23.8 0.0 1.3 1 1 0 1 1 1 1 Winged helix DNA-binding domain HTH_24 PF13412.1 gi|433593383|ref|YP_007296124.1| - 4.3e-05 22.8 0.0 7e-05 22.1 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|433593383|ref|YP_007296124.1| - 0.00041 20.1 0.0 0.00058 19.6 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AsnC-type PF13404.1 gi|433593383|ref|YP_007296124.1| - 0.00098 18.6 0.0 0.002 17.5 0.0 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_36 PF13730.1 gi|433593383|ref|YP_007296124.1| - 0.0087 16.1 0.0 0.012 15.7 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_DeoR PF08220.7 gi|433593383|ref|YP_007296124.1| - 0.019 14.5 0.0 0.025 14.0 0.0 1.2 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_45 PF14947.1 gi|433593383|ref|YP_007296124.1| - 0.022 14.5 0.0 0.035 13.9 0.0 1.3 1 1 0 1 1 1 0 Winged helix-turn-helix HTH_IclR PF09339.5 gi|433593383|ref|YP_007296124.1| - 0.031 13.8 0.0 0.041 13.4 0.0 1.2 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_5 PF01022.15 gi|433593383|ref|YP_007296124.1| - 0.036 13.7 0.0 0.048 13.3 0.0 1.2 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_11 PF08279.7 gi|433593383|ref|YP_007296124.1| - 0.12 12.0 0.0 0.16 11.6 0.0 1.2 1 0 0 1 1 1 0 HTH domain TrmB PF01978.14 gi|433593383|ref|YP_007296124.1| - 0.12 12.0 0.0 0.17 11.6 0.0 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB RHH_1 PF01402.16 gi|433593384|ref|YP_007296125.1| - 2.5e-07 30.2 0.3 4.8e-07 29.3 0.2 1.4 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family Plasmid_stabil PF05016.9 gi|433593385|ref|YP_007296126.1| - 0.00078 19.7 0.1 0.0012 19.1 0.1 1.4 1 1 0 1 1 1 1 Plasmid stabilisation system protein DDE_Tnp_1 PF01609.16 gi|433593386|ref|YP_007296127.1| - 5.7e-10 39.0 2.7 3.4e-08 33.3 0.0 3.0 3 0 0 3 3 3 2 Transposase DDE domain DUF1641 PF07849.6 gi|433593386|ref|YP_007296127.1| - 0.14 11.7 0.6 0.32 10.6 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1641) CcoS PF03597.10 gi|433593386|ref|YP_007296127.1| - 0.15 11.5 0.0 0.31 10.5 0.0 1.5 1 0 0 1 1 1 0 Cytochrome oxidase maturation protein cbb3-type OrfB_IS605 PF01385.14 gi|433593387|ref|YP_007296128.1| - 1.2e-55 188.3 0.1 1.5e-55 188.0 0.1 1.1 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|433593387|ref|YP_007296128.1| - 1.8e-20 72.3 0.9 3.8e-20 71.3 0.6 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Ribosomal_L37ae PF01780.14 gi|433593387|ref|YP_007296128.1| - 0.067 13.0 2.1 0.16 11.8 0.5 2.1 2 0 0 2 2 2 0 Ribosomal L37ae protein family Complex1_30kDa PF00329.14 gi|433593387|ref|YP_007296128.1| - 0.16 12.2 0.5 0.36 11.0 0.0 1.8 2 0 0 2 2 2 0 Respiratory-chain NADH dehydrogenase, 30 Kd subunit DUF86 PF01934.12 gi|433593388|ref|YP_007296129.1| - 1.3e-08 34.5 0.1 1.4e-08 34.3 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF86 HTH_20 PF12840.2 gi|433593389|ref|YP_007296130.1| - 0.00071 19.3 0.4 0.001 18.7 0.3 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|433593389|ref|YP_007296130.1| - 0.0048 16.4 0.2 0.0072 15.8 0.1 1.2 1 0 0 1 1 1 1 IclR helix-turn-helix domain OrfB_Zn_ribbon PF07282.6 gi|433593391|ref|YP_007296132.1| - 1e-22 79.5 1.3 2.2e-22 78.4 0.9 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|433593391|ref|YP_007296132.1| - 3.7e-10 39.5 0.0 5.8e-10 38.9 0.0 1.3 1 0 0 1 1 1 1 Probable transposase DZR PF12773.2 gi|433593391|ref|YP_007296132.1| - 0.02 14.7 3.1 0.045 13.5 2.1 1.6 1 0 0 1 1 1 0 Double zinc ribbon DUF2283 PF10049.4 gi|433593391|ref|YP_007296132.1| - 0.12 12.2 0.0 0.43 10.4 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2283) Zn_ribbon_2 PF12674.2 gi|433593391|ref|YP_007296132.1| - 0.35 11.2 3.0 1.2 9.5 0.2 3.1 4 0 0 4 4 4 0 Putative zinc ribbon domain UPF0547 PF10571.4 gi|433593391|ref|YP_007296132.1| - 1.9 8.2 7.7 0.51 10.0 0.1 2.5 3 0 0 3 3 3 0 Uncharacterised protein family UPF0547 zf-ribbon_3 PF13248.1 gi|433593391|ref|YP_007296132.1| - 2.6 7.3 7.1 18 4.6 4.9 2.2 1 1 0 1 1 1 0 zinc-ribbon domain zf-NADH-PPase PF09297.6 gi|433593391|ref|YP_007296132.1| - 2.8 7.5 6.7 1.1 8.8 2.1 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain CbiA PF01656.18 gi|433593392|ref|YP_007296133.1| - 9.7e-26 90.3 0.0 1.2e-25 90.0 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MipZ PF09140.6 gi|433593392|ref|YP_007296133.1| - 6.2e-09 35.3 0.4 1.5e-06 27.4 0.0 2.2 2 0 0 2 2 2 2 ATPase MipZ Fer4_NifH PF00142.13 gi|433593392|ref|YP_007296133.1| - 8.3e-08 31.7 0.2 2.7e-05 23.4 0.1 2.1 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_31 PF13614.1 gi|433593392|ref|YP_007296133.1| - 7.5e-06 25.9 0.2 4.2e-05 23.5 0.1 2.2 1 1 0 1 1 1 1 AAA domain ArsA_ATPase PF02374.10 gi|433593392|ref|YP_007296133.1| - 0.00025 20.2 0.4 0.00088 18.4 0.1 2.0 2 0 0 2 2 2 1 Anion-transporting ATPase YhjQ PF06564.7 gi|433593392|ref|YP_007296133.1| - 0.00044 19.6 0.1 0.85 8.9 0.0 2.3 2 0 0 2 2 2 2 YhjQ protein VirC1 PF07015.6 gi|433593392|ref|YP_007296133.1| - 0.0026 16.8 3.1 0.011 14.7 0.0 2.8 2 1 0 3 3 3 1 VirC1 protein ParA PF10609.4 gi|433593392|ref|YP_007296133.1| - 0.048 13.5 0.0 0.14 12.0 0.0 1.8 1 0 0 1 1 1 0 ParA/MinD ATPase like UPF0081 PF03652.10 gi|433593392|ref|YP_007296133.1| - 0.11 12.6 0.0 0.2 11.7 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0081) AAA_19 PF13245.1 gi|433593392|ref|YP_007296133.1| - 0.14 11.9 0.1 0.36 10.6 0.0 1.7 2 0 0 2 2 2 0 Part of AAA domain Ribosomal_S21 PF01165.15 gi|433593393|ref|YP_007296134.1| - 0.0037 16.6 1.8 0.024 14.0 0.0 2.4 3 0 0 3 3 3 1 Ribosomal protein S21 DUF1034 PF06280.7 gi|433593393|ref|YP_007296134.1| - 0.024 15.0 0.7 0.031 14.6 0.5 1.3 1 0 0 1 1 1 0 Fn3-like domain (DUF1034) Glycoprotein_G PF00802.14 gi|433593393|ref|YP_007296134.1| - 0.072 12.2 1.4 0.083 12.0 1.0 1.3 1 0 0 1 1 1 0 Pneumovirus attachment glycoprotein G DUF3530 PF12048.3 gi|433593393|ref|YP_007296134.1| - 0.2 10.5 5.0 0.25 10.3 3.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3530) CcdA PF07362.7 gi|433593396|ref|YP_007296137.1| - 0.09 12.6 0.1 0.091 12.6 0.1 1.0 1 0 0 1 1 1 0 Post-segregation antitoxin CcdA OrfB_IS605 PF01385.14 gi|433593397|ref|YP_007296138.1| - 2.8e-28 98.8 0.2 7.6e-28 97.4 0.0 1.7 2 0 0 2 2 2 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|433593397|ref|YP_007296138.1| - 9.2e-22 76.4 2.8 3.2e-21 74.7 0.1 2.8 3 0 0 3 3 3 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|433593397|ref|YP_007296138.1| - 6.3e-08 31.8 0.2 1.2e-07 30.9 0.2 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain DZR PF12773.2 gi|433593397|ref|YP_007296138.1| - 0.052 13.3 3.1 0.055 13.2 1.1 1.9 2 0 0 2 2 2 0 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|433593397|ref|YP_007296138.1| - 0.11 11.7 3.8 0.52 9.5 0.1 2.6 3 0 0 3 3 3 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|433593397|ref|YP_007296138.1| - 0.24 11.3 2.4 6.9 6.7 0.2 2.6 2 0 0 2 2 2 0 Zinc ribbon domain TrmB PF01978.14 gi|433593398|ref|YP_007296139.1| - 6.3e-05 22.5 0.0 0.00011 21.8 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_23 PF13384.1 gi|433593398|ref|YP_007296139.1| - 9.1e-05 21.9 0.1 0.0002 20.9 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_29 PF13551.1 gi|433593398|ref|YP_007296139.1| - 0.002 18.2 0.1 0.0068 16.5 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn helix MarR PF01047.17 gi|433593398|ref|YP_007296139.1| - 0.015 14.9 0.0 0.025 14.2 0.0 1.3 1 0 0 1 1 1 0 MarR family HTH_28 PF13518.1 gi|433593398|ref|YP_007296139.1| - 0.023 14.7 0.0 0.095 12.7 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain PIN_3 PF13470.1 gi|433593399|ref|YP_007296140.1| - 1.1e-19 71.2 0.1 1.3e-19 70.9 0.1 1.1 1 0 0 1 1 1 1 PIN domain PIN PF01850.16 gi|433593399|ref|YP_007296140.1| - 0.00023 21.4 0.5 0.00034 20.9 0.4 1.3 1 1 0 1 1 1 1 PIN domain PurA PF04845.8 gi|433593399|ref|YP_007296140.1| - 0.064 12.3 0.0 0.085 11.9 0.0 1.1 1 0 0 1 1 1 0 PurA ssDNA and RNA-binding protein Antitoxin-MazE PF04014.13 gi|433593400|ref|YP_007296141.1| - 3.8e-09 36.0 0.1 6.9e-09 35.2 0.0 1.5 2 0 0 2 2 2 1 Antidote-toxin recognition MazE MraZ PF02381.13 gi|433593400|ref|YP_007296141.1| - 0.0046 16.6 0.0 0.0074 16.0 0.0 1.4 1 1 0 1 1 1 1 MraZ protein Glutaminase PF04960.10 gi|433593402|ref|YP_007296143.1| - 0.14 11.0 0.0 0.15 10.9 0.0 1.0 1 0 0 1 1 1 0 Glutaminase HTH_24 PF13412.1 gi|433593403|ref|YP_007296144.1| - 0.0009 18.5 0.0 0.0014 18.0 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|433593403|ref|YP_007296144.1| - 0.0034 17.0 0.0 0.006 16.2 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|433593403|ref|YP_007296144.1| - 0.0054 16.2 0.0 0.019 14.5 0.0 1.8 2 0 0 2 2 2 1 IclR helix-turn-helix domain Rrf2 PF02082.15 gi|433593403|ref|YP_007296144.1| - 0.0055 16.7 0.0 0.3 11.2 0.0 2.3 2 0 0 2 2 2 1 Transcriptional regulator TrmB PF01978.14 gi|433593403|ref|YP_007296144.1| - 0.0062 16.2 0.0 0.011 15.4 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_29 PF13551.1 gi|433593403|ref|YP_007296144.1| - 0.01 15.9 0.0 0.032 14.3 0.0 1.7 2 0 0 2 2 2 0 Winged helix-turn helix HTH_36 PF13730.1 gi|433593403|ref|YP_007296144.1| - 0.025 14.6 0.0 0.042 13.9 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_23 PF13384.1 gi|433593403|ref|YP_007296144.1| - 0.027 14.1 0.0 0.055 13.1 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain GntR PF00392.16 gi|433593403|ref|YP_007296144.1| - 0.039 13.3 0.0 0.14 11.5 0.0 1.8 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family HTH_28 PF13518.1 gi|433593403|ref|YP_007296144.1| - 0.047 13.7 0.0 0.092 12.7 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Fe_dep_repress PF01325.14 gi|433593403|ref|YP_007296144.1| - 0.073 13.0 0.0 0.15 12.0 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain MarR PF01047.17 gi|433593403|ref|YP_007296144.1| - 0.15 11.7 0.0 0.3 10.8 0.0 1.4 1 0 0 1 1 1 0 MarR family Arch_ATPase PF01637.13 gi|433593404|ref|YP_007296145.1| - 1.1e-32 113.6 0.0 2.3e-32 112.6 0.0 1.6 1 0 0 1 1 1 1 Archaeal ATPase DUF234 PF03008.9 gi|433593404|ref|YP_007296145.1| - 4e-21 75.0 0.0 7.9e-21 74.0 0.0 1.5 1 0 0 1 1 1 1 Archaea bacterial proteins of unknown function AAA_14 PF13173.1 gi|433593404|ref|YP_007296145.1| - 6.4e-08 32.5 0.0 2.5e-07 30.6 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|433593404|ref|YP_007296145.1| - 1e-06 28.9 0.1 4.9e-06 26.7 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|433593404|ref|YP_007296145.1| - 3.8e-06 27.0 0.0 1.1e-05 25.5 0.0 1.8 1 0 0 1 1 1 1 AAA ATPase domain MarR_2 PF12802.2 gi|433593404|ref|YP_007296145.1| - 0.00017 21.1 0.1 0.0017 17.9 0.0 2.4 2 0 0 2 2 2 1 MarR family HTH_24 PF13412.1 gi|433593404|ref|YP_007296145.1| - 0.004 16.4 0.2 0.0073 15.6 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.1 gi|433593404|ref|YP_007296145.1| - 0.016 14.9 0.1 0.034 13.9 0.1 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain FaeA PF04703.7 gi|433593404|ref|YP_007296145.1| - 0.029 14.5 0.1 0.061 13.4 0.1 1.4 1 0 0 1 1 1 0 FaeA-like protein TrmB PF01978.14 gi|433593404|ref|YP_007296145.1| - 0.034 13.8 0.0 0.082 12.6 0.0 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB B-block_TFIIIC PF04182.7 gi|433593404|ref|YP_007296145.1| - 0.036 13.9 0.0 0.063 13.1 0.0 1.4 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC HTH_20 PF12840.2 gi|433593404|ref|YP_007296145.1| - 0.081 12.7 0.0 0.19 11.5 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_IclR PF09339.5 gi|433593404|ref|YP_007296145.1| - 0.094 12.3 0.0 0.21 11.1 0.0 1.6 1 0 0 1 1 1 0 IclR helix-turn-helix domain DUF955 PF06114.8 gi|433593405|ref|YP_007296146.1| - 0.0028 17.3 0.0 0.0046 16.6 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF955) SprT-like PF10263.4 gi|433593405|ref|YP_007296146.1| - 0.0089 15.7 2.9 0.048 13.3 1.4 2.3 1 1 1 2 2 2 1 SprT-like family WXG100 PF06013.7 gi|433593405|ref|YP_007296146.1| - 0.015 15.2 0.4 13 5.8 0.0 3.2 3 0 0 3 3 3 0 Proteins of 100 residues with WXG Peptidase_MA_2 PF13485.1 gi|433593405|ref|YP_007296146.1| - 0.018 15.0 0.0 0.041 13.9 0.0 1.7 1 0 0 1 1 1 0 Peptidase MA superfamily MarR_2 PF12802.2 gi|433593407|ref|YP_007296148.1| - 1.8e-09 37.1 1.1 0.0018 17.9 0.1 2.6 2 0 0 2 2 2 2 MarR family HTH_20 PF12840.2 gi|433593407|ref|YP_007296148.1| - 2e-08 33.8 0.5 0.0015 18.3 0.0 2.4 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_27 PF13463.1 gi|433593407|ref|YP_007296148.1| - 2.6e-08 34.0 0.1 0.00053 20.2 0.0 2.5 2 0 0 2 2 2 2 Winged helix DNA-binding domain Sigma70_r3 PF04539.11 gi|433593407|ref|YP_007296148.1| - 3.7e-06 26.7 0.0 0.0039 17.0 0.0 2.5 2 0 0 2 2 2 2 Sigma-70 region 3 HTH_IclR PF09339.5 gi|433593407|ref|YP_007296148.1| - 2.4e-05 23.8 2.6 0.013 15.0 0.3 2.7 2 0 0 2 2 2 2 IclR helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|433593407|ref|YP_007296148.1| - 4.8e-05 23.0 0.0 0.0084 15.8 0.0 2.4 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain TrmB PF01978.14 gi|433593407|ref|YP_007296148.1| - 0.0001 21.9 0.0 0.071 12.8 0.0 2.9 2 1 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_29 PF13551.1 gi|433593407|ref|YP_007296148.1| - 0.00032 20.8 0.1 0.0082 16.2 0.0 2.3 2 0 0 2 2 2 1 Winged helix-turn helix HTH_28 PF13518.1 gi|433593407|ref|YP_007296148.1| - 0.00055 19.8 0.0 0.061 13.3 0.0 3.1 3 0 0 3 3 3 1 Helix-turn-helix domain GntR PF00392.16 gi|433593407|ref|YP_007296148.1| - 0.00093 18.5 0.4 0.48 9.9 0.0 3.4 3 0 0 3 3 3 1 Bacterial regulatory proteins, gntR family MarR PF01047.17 gi|433593407|ref|YP_007296148.1| - 0.001 18.7 0.0 0.065 12.9 0.0 2.3 2 0 0 2 2 2 1 MarR family HTH_23 PF13384.1 gi|433593407|ref|YP_007296148.1| - 0.0021 17.6 0.0 0.91 9.2 0.0 2.7 2 0 0 2 2 2 1 Homeodomain-like domain HTH_24 PF13412.1 gi|433593407|ref|YP_007296148.1| - 0.0026 17.0 0.0 1 8.7 0.0 2.3 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_10 PF04967.7 gi|433593407|ref|YP_007296148.1| - 0.0037 16.8 0.0 0.39 10.3 0.0 2.5 2 0 0 2 2 2 1 HTH DNA binding domain Rrf2 PF02082.15 gi|433593407|ref|YP_007296148.1| - 0.027 14.5 0.0 4.3 7.5 0.0 2.5 2 0 0 2 2 2 0 Transcriptional regulator HTH_11 PF08279.7 gi|433593407|ref|YP_007296148.1| - 0.054 13.1 0.0 0.7 9.5 0.0 2.2 2 0 0 2 2 2 0 HTH domain DUF1441 PF07278.6 gi|433593407|ref|YP_007296148.1| - 0.066 12.8 0.0 0.12 12.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1441) Sigma70_r4 PF04545.11 gi|433593407|ref|YP_007296148.1| - 0.078 12.3 0.0 1.6 8.1 0.0 2.7 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_AsnC-type PF13404.1 gi|433593407|ref|YP_007296148.1| - 0.095 12.2 0.1 5.8 6.5 0.0 2.7 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain HTH_17 PF12728.2 gi|433593407|ref|YP_007296148.1| - 0.11 12.7 0.1 3.7 7.8 0.0 2.6 3 0 0 3 3 2 0 Helix-turn-helix domain Nudix_N_2 PF14803.1 gi|433593409|ref|YP_007296150.1| - 0.0051 16.4 1.4 0.91 9.2 0.1 2.5 2 0 0 2 2 2 2 Nudix N-terminal zinc_ribbon_2 PF13240.1 gi|433593409|ref|YP_007296150.1| - 0.0058 16.0 1.1 2.7 7.6 0.1 2.3 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.2 gi|433593409|ref|YP_007296150.1| - 0.012 15.4 0.7 0.02 14.6 0.5 1.4 1 0 0 1 1 1 0 Double zinc ribbon DUF2318 PF10080.4 gi|433593409|ref|YP_007296150.1| - 0.03 14.0 0.0 0.038 13.7 0.0 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2318) DRP PF06044.7 gi|433593409|ref|YP_007296150.1| - 0.045 12.7 0.4 0.076 11.9 0.2 1.4 1 1 0 1 1 1 0 Dam-replacing family GFA PF04828.9 gi|433593409|ref|YP_007296150.1| - 0.045 13.7 1.6 1 9.3 0.2 2.2 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme RPA_interact_C PF14768.1 gi|433593409|ref|YP_007296150.1| - 0.059 13.7 0.5 0.082 13.3 0.3 1.2 1 0 0 1 1 1 0 Replication protein A interacting C-terminal zf-ribbon_3 PF13248.1 gi|433593409|ref|YP_007296150.1| - 0.077 12.2 4.3 0.57 9.4 3.2 2.1 1 1 1 2 2 2 0 zinc-ribbon domain Lar_restr_allev PF14354.1 gi|433593409|ref|YP_007296150.1| - 0.081 13.2 3.1 0.22 11.8 2.2 1.7 1 1 0 1 1 1 0 Restriction alleviation protein Lar zinc-ribbons_6 PF07191.7 gi|433593409|ref|YP_007296150.1| - 0.082 12.7 0.1 0.21 11.4 0.3 1.5 2 0 0 2 2 2 0 zinc-ribbons RNA_POL_M_15KD PF02150.11 gi|433593410|ref|YP_007296151.1| - 0.0014 18.2 2.3 0.0031 17.1 0.1 2.1 2 0 0 2 2 2 1 RNA polymerases M/15 Kd subunit OrfB_Zn_ribbon PF07282.6 gi|433593410|ref|YP_007296151.1| - 0.21 11.2 1.9 0.44 10.2 1.2 1.7 1 1 0 1 1 1 0 Putative transposase DNA-binding domain DDE_Tnp_IS1595 PF12762.2 gi|433593412|ref|YP_007296153.1| - 1.6e-22 79.9 0.0 2.7e-22 79.2 0.0 1.4 1 0 0 1 1 1 1 ISXO2-like transposase domain Zn_Tnp_IS1595 PF12760.2 gi|433593412|ref|YP_007296153.1| - 1.7e-09 37.3 2.4 3.3e-09 36.3 1.6 1.5 1 0 0 1 1 1 1 Transposase zinc-ribbon domain DUF2089 PF09862.4 gi|433593412|ref|YP_007296153.1| - 0.00087 19.0 0.0 0.0015 18.3 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF2089) Zn_Tnp_IS1 PF03811.8 gi|433593412|ref|YP_007296153.1| - 0.0037 16.7 4.7 0.0081 15.6 2.5 2.1 2 0 0 2 2 2 1 InsA N-terminal domain ADK_lid PF05191.9 gi|433593412|ref|YP_007296153.1| - 0.052 13.2 0.2 0.052 13.2 0.1 1.9 2 0 0 2 2 2 0 Adenylate kinase, active site lid Zn-ribbon_8 PF09723.5 gi|433593412|ref|YP_007296153.1| - 0.061 13.2 0.5 5.2 7.1 0.2 2.5 2 0 0 2 2 2 0 Zinc ribbon domain HTH_30 PF13556.1 gi|433593412|ref|YP_007296153.1| - 0.092 12.3 0.3 0.25 10.9 0.2 1.7 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|433593412|ref|YP_007296153.1| - 0.11 12.0 0.1 18 4.8 0.0 2.4 2 0 0 2 2 2 0 Sigma-70, region 4 zf-Dof PF02701.10 gi|433593412|ref|YP_007296153.1| - 0.23 11.3 3.3 0.4 10.6 2.3 1.4 1 0 0 1 1 1 0 Dof domain, zinc finger zf-C2H2_6 PF13912.1 gi|433593412|ref|YP_007296153.1| - 0.58 10.1 3.3 0.71 9.8 0.2 2.3 2 0 0 2 2 2 0 C2H2-type zinc finger zf-ISL3 PF14690.1 gi|433593412|ref|YP_007296153.1| - 0.98 9.5 4.4 22 5.2 0.1 2.9 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-C2H2 PF00096.21 gi|433593412|ref|YP_007296153.1| - 2.3 8.7 4.4 0.49 10.8 0.3 2.0 2 0 0 2 2 2 0 Zinc finger, C2H2 type MarR_2 PF12802.2 gi|433593413|ref|YP_007296154.1| - 8.9e-05 22.0 0.0 0.00012 21.6 0.0 1.2 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|433593413|ref|YP_007296154.1| - 0.00023 20.8 0.0 0.00032 20.3 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.1 gi|433593413|ref|YP_007296154.1| - 0.0019 17.9 0.0 0.0027 17.4 0.0 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain MarR PF01047.17 gi|433593413|ref|YP_007296154.1| - 0.0025 17.4 0.0 0.0043 16.7 0.0 1.3 1 0 0 1 1 1 1 MarR family DUF4095 PF13338.1 gi|433593413|ref|YP_007296154.1| - 0.013 15.6 0.0 0.017 15.2 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4095) GntR PF00392.16 gi|433593413|ref|YP_007296154.1| - 0.015 14.7 0.1 0.023 14.1 0.1 1.2 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_27 PF13463.1 gi|433593413|ref|YP_007296154.1| - 0.14 12.4 0.0 0.2 11.9 0.0 1.5 1 1 0 1 1 1 0 Winged helix DNA-binding domain DDE_Tnp_IS66 PF03050.9 gi|433593415|ref|YP_007296156.1| - 2.8e-52 177.5 0.0 2.8e-52 177.5 0.0 2.1 2 0 0 2 2 2 1 Transposase IS66 family SlyX PF04102.7 gi|433593415|ref|YP_007296156.1| - 8.4e-09 35.6 7.0 2e-08 34.4 4.8 1.7 1 0 0 1 1 1 1 SlyX zf-IS66 PF13005.2 gi|433593415|ref|YP_007296156.1| - 0.00066 19.5 5.8 0.00066 19.5 4.0 2.5 2 0 0 2 2 1 1 zinc-finger binding domain of transposase IS66 Atg14 PF10186.4 gi|433593415|ref|YP_007296156.1| - 0.0012 17.9 8.2 0.0019 17.1 5.7 1.3 1 0 0 1 1 1 1 UV radiation resistance protein and autophagy-related subunit 14 Fmp27_WPPW PF10359.4 gi|433593415|ref|YP_007296156.1| - 0.0026 16.2 7.0 0.0037 15.7 4.8 1.1 1 0 0 1 1 1 1 RNA pol II promoter Fmp27 protein domain MscS_porin PF12795.2 gi|433593415|ref|YP_007296156.1| - 0.0057 16.0 8.0 0.0091 15.3 5.6 1.3 1 0 0 1 1 1 1 Mechanosensitive ion channel porin domain DUF16 PF01519.11 gi|433593415|ref|YP_007296156.1| - 0.0057 16.8 5.1 0.013 15.7 3.6 1.5 1 0 0 1 1 1 1 Protein of unknown function DUF16 ATG16 PF08614.6 gi|433593415|ref|YP_007296156.1| - 0.013 15.3 10.5 0.025 14.4 7.2 1.4 1 0 0 1 1 1 0 Autophagy protein 16 (ATG16) Cortex-I_coil PF09304.5 gi|433593415|ref|YP_007296156.1| - 0.016 15.1 8.9 0.034 14.1 6.2 1.4 1 0 0 1 1 1 0 Cortexillin I, coiled coil IncA PF04156.9 gi|433593415|ref|YP_007296156.1| - 0.02 14.4 12.1 0.045 13.3 8.4 1.5 1 0 0 1 1 1 0 IncA protein HSBP1 PF06825.7 gi|433593415|ref|YP_007296156.1| - 0.022 14.3 6.1 0.49 10.0 1.7 2.5 2 0 0 2 2 2 0 Heat shock factor binding protein 1 DZR PF12773.2 gi|433593415|ref|YP_007296156.1| - 0.028 14.2 2.8 0.069 12.9 2.0 1.6 1 0 0 1 1 1 0 Double zinc ribbon AAA_13 PF13166.1 gi|433593415|ref|YP_007296156.1| - 0.039 12.4 7.5 0.053 11.9 5.2 1.1 1 0 0 1 1 1 0 AAA domain Cast PF10174.4 gi|433593415|ref|YP_007296156.1| - 0.045 11.7 10.2 0.063 11.3 7.0 1.1 1 0 0 1 1 1 0 RIM-binding protein of the cytomatrix active zone GAS PF13851.1 gi|433593415|ref|YP_007296156.1| - 0.066 12.3 9.5 0.11 11.6 6.6 1.3 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding DDE_Tnp_IS240 PF13610.1 gi|433593415|ref|YP_007296156.1| - 0.074 13.0 3.1 0.19 11.6 0.0 2.5 2 1 0 2 2 2 0 DDE domain Spc7 PF08317.6 gi|433593415|ref|YP_007296156.1| - 0.084 11.5 8.5 0.17 10.5 5.9 1.4 1 0 0 1 1 1 0 Spc7 kinetochore protein Mnd1 PF03962.10 gi|433593415|ref|YP_007296156.1| - 0.087 12.4 9.9 0.26 10.9 6.8 1.7 1 0 0 1 1 1 0 Mnd1 family DUF3552 PF12072.3 gi|433593415|ref|YP_007296156.1| - 0.089 11.9 15.5 0.15 11.2 10.7 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3552) TMF_DNA_bd PF12329.3 gi|433593415|ref|YP_007296156.1| - 0.11 12.3 12.3 0.25 11.1 8.5 1.6 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding TMCO5 PF14992.1 gi|433593415|ref|YP_007296156.1| - 0.14 11.3 8.7 0.23 10.5 6.0 1.3 1 0 0 1 1 1 0 TMCO5 family Fib_alpha PF08702.5 gi|433593415|ref|YP_007296156.1| - 0.14 12.2 5.0 0.31 11.1 3.5 1.5 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family FliD_C PF07195.7 gi|433593415|ref|YP_007296156.1| - 0.17 11.1 4.2 0.31 10.3 2.9 1.4 1 0 0 1 1 1 0 Flagellar hook-associated protein 2 C-terminus Flagellin_C PF00700.16 gi|433593415|ref|YP_007296156.1| - 0.24 11.5 1.8 0.48 10.6 1.3 1.4 1 0 0 1 1 1 0 Bacterial flagellin C-terminal helical region Allexi_40kDa PF05549.6 gi|433593415|ref|YP_007296156.1| - 0.27 10.5 2.8 0.46 9.7 1.9 1.3 1 0 0 1 1 1 0 Allexivirus 40kDa protein Fzo_mitofusin PF04799.8 gi|433593415|ref|YP_007296156.1| - 0.36 10.1 3.5 0.67 9.3 2.5 1.3 1 0 0 1 1 1 0 fzo-like conserved region DUF3584 PF12128.3 gi|433593415|ref|YP_007296156.1| - 0.42 7.8 8.1 0.62 7.3 5.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) DUF812 PF05667.6 gi|433593415|ref|YP_007296156.1| - 0.44 8.9 8.7 0.65 8.4 6.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF812) DASH_Spc34 PF08657.5 gi|433593415|ref|YP_007296156.1| - 0.49 10.0 14.2 2.1 7.9 6.7 2.4 1 1 1 2 2 2 0 DASH complex subunit Spc34 COG2 PF06148.6 gi|433593415|ref|YP_007296156.1| - 0.61 9.9 5.2 1.1 9.0 3.6 1.4 1 0 0 1 1 1 0 COG (conserved oligomeric Golgi) complex component, COG2 Med9 PF07544.8 gi|433593415|ref|YP_007296156.1| - 0.89 9.3 19.2 12 5.7 7.6 3.2 2 1 1 3 3 3 0 RNA polymerase II transcription mediator complex subunit 9 DUF536 PF04394.9 gi|433593415|ref|YP_007296156.1| - 0.93 9.2 15.4 1.6 8.4 10.7 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF536 MIF4G_like_2 PF09090.6 gi|433593415|ref|YP_007296156.1| - 1 8.5 5.5 0.96 8.6 2.9 1.6 2 0 0 2 2 1 0 MIF4G like DUF1465 PF07323.7 gi|433593415|ref|YP_007296156.1| - 1.1 8.8 7.1 2.1 7.8 1.7 2.9 3 0 0 3 3 2 0 Protein of unknown function (DUF1465) DUF1664 PF07889.7 gi|433593415|ref|YP_007296156.1| - 1.8 8.3 4.7 3.8 7.3 3.2 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) V_ATPase_I PF01496.14 gi|433593415|ref|YP_007296156.1| - 2.5 5.8 6.5 3.5 5.3 4.5 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family FemAB PF02388.11 gi|433593415|ref|YP_007296156.1| - 3 6.4 6.9 4.3 5.8 4.8 1.1 1 0 0 1 1 1 0 FemAB family TMPIT PF07851.8 gi|433593415|ref|YP_007296156.1| - 3.8 6.4 4.1 6 5.8 2.9 1.2 1 0 0 1 1 1 0 TMPIT-like protein BTV_NS2 PF04514.7 gi|433593415|ref|YP_007296156.1| - 4 6.2 9.8 6.3 5.5 6.8 1.2 1 0 0 1 1 1 0 Bluetongue virus non-structural protein NS2 DUF3450 PF11932.3 gi|433593415|ref|YP_007296156.1| - 4.6 6.4 12.1 0.89 8.7 5.6 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3450) DUF4337 PF14235.1 gi|433593415|ref|YP_007296156.1| - 5.5 6.8 6.2 9.8 5.9 4.3 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4337) DUF4446 PF14584.1 gi|433593415|ref|YP_007296156.1| - 9 6.1 6.0 19 5.0 4.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF4446) DUF2328 PF10090.4 gi|433593416|ref|YP_007296157.1| - 0.011 14.9 0.0 0.021 13.9 0.0 1.5 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2328) DUF457 PF04307.9 gi|433593417|ref|YP_007296158.1| - 1e-10 41.1 12.9 1.2e-10 40.9 8.9 1.1 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) Zn_dep_PLPC PF00882.13 gi|433593417|ref|YP_007296158.1| - 0.0068 16.0 0.5 0.0095 15.5 0.3 1.3 1 0 0 1 1 1 1 Zinc dependent phospholipase C TFIIB PF00382.14 gi|433593418|ref|YP_007296159.1| - 2.6e-49 164.8 3.5 5.5e-24 83.7 0.2 2.5 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|433593418|ref|YP_007296159.1| - 7.5e-15 53.9 1.9 1.3e-14 53.2 1.3 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding A2L_zn_ribbon PF08792.5 gi|433593418|ref|YP_007296159.1| - 0.0011 18.3 1.6 0.0026 17.1 1.1 1.6 1 0 0 1 1 1 1 A2L zinc ribbon domain Sigma70_r4 PF04545.11 gi|433593418|ref|YP_007296159.1| - 0.0053 16.0 2.3 0.079 12.2 0.1 3.3 3 1 0 3 3 3 1 Sigma-70, region 4 OrfB_Zn_ribbon PF07282.6 gi|433593418|ref|YP_007296159.1| - 0.0073 15.9 1.7 0.019 14.5 1.2 1.7 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Cyclin_N PF00134.18 gi|433593418|ref|YP_007296159.1| - 0.0092 15.5 0.0 0.025 14.1 0.0 1.8 2 0 0 2 2 2 1 Cyclin, N-terminal domain DUF2318 PF10080.4 gi|433593418|ref|YP_007296159.1| - 0.034 13.8 0.3 0.071 12.8 0.2 1.4 1 0 0 1 1 1 0 Predicted membrane protein (DUF2318) RRN7 PF11781.3 gi|433593418|ref|YP_007296159.1| - 0.053 13.0 0.6 0.12 11.8 0.4 1.6 1 0 0 1 1 1 0 RNA polymerase I-specific transcription initiation factor Rrn7 DUF4503 PF14951.1 gi|433593418|ref|YP_007296159.1| - 0.056 11.5 0.6 0.084 11.0 0.2 1.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4503) Trm112p PF03966.11 gi|433593418|ref|YP_007296159.1| - 0.087 13.1 0.5 0.24 11.7 0.4 1.7 1 0 0 1 1 1 0 Trm112p-like protein DZR PF12773.2 gi|433593418|ref|YP_007296159.1| - 0.11 12.3 0.5 0.31 10.8 0.3 1.7 1 0 0 1 1 1 0 Double zinc ribbon HTH_23 PF13384.1 gi|433593418|ref|YP_007296159.1| - 0.13 11.9 1.1 3.3 7.5 0.1 3.2 3 0 0 3 3 3 0 Homeodomain-like domain zf-ribbon_3 PF13248.1 gi|433593418|ref|YP_007296159.1| - 0.13 11.4 0.3 0.3 10.3 0.2 1.6 1 0 0 1 1 1 0 zinc-ribbon domain Glycos_transf_2 PF00535.21 gi|433593419|ref|YP_007296160.1| - 1e-23 83.8 0.0 1.4e-23 83.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|433593419|ref|YP_007296160.1| - 1.9e-08 34.3 0.0 3.3e-08 33.6 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|433593419|ref|YP_007296160.1| - 0.05 12.6 0.0 0.068 12.2 0.0 1.2 1 0 0 1 1 1 0 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|433593419|ref|YP_007296160.1| - 0.055 13.7 0.0 0.11 12.8 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferase family 2 Glyco_transf_21 PF13506.1 gi|433593419|ref|YP_007296160.1| - 0.066 12.5 0.0 0.18 11.1 0.0 1.8 2 0 0 2 2 2 0 Glycosyl transferase family 21 DDE_Tnp_1 PF01609.16 gi|433593421|ref|YP_007296162.1| - 8.1e-24 84.3 0.3 1.1e-23 83.9 0.2 1.1 1 0 0 1 1 1 1 Transposase DDE domain SF3a60_bindingd PF12108.3 gi|433593422|ref|YP_007296163.1| - 0.12 11.9 0.2 0.21 11.1 0.2 1.4 1 0 0 1 1 1 0 Splicing factor SF3a60 binding domain DDE_Tnp_IS66 PF03050.9 gi|433593423|ref|YP_007296164.1| - 6.5e-51 173.1 0.3 6.5e-51 173.1 0.2 1.7 2 0 0 2 2 2 1 Transposase IS66 family Tropomyosin_1 PF12718.2 gi|433593423|ref|YP_007296164.1| - 3.1e-05 23.8 8.1 7e-05 22.6 5.6 1.6 1 0 0 1 1 1 1 Tropomyosin like ATG16 PF08614.6 gi|433593423|ref|YP_007296164.1| - 0.0004 20.2 8.2 0.00078 19.3 5.7 1.4 1 0 0 1 1 1 1 Autophagy protein 16 (ATG16) DDE_Tnp_IS240 PF13610.1 gi|433593423|ref|YP_007296164.1| - 0.00079 19.4 0.7 0.0036 17.2 0.0 2.2 2 1 0 2 2 2 1 DDE domain ERM PF00769.14 gi|433593423|ref|YP_007296164.1| - 0.0021 17.6 4.8 0.0035 16.9 3.3 1.3 1 0 0 1 1 1 1 Ezrin/radixin/moesin family Striatin PF08232.7 gi|433593423|ref|YP_007296164.1| - 0.0056 17.0 5.0 0.012 15.9 3.5 1.5 1 0 0 1 1 1 1 Striatin family SlyX PF04102.7 gi|433593423|ref|YP_007296164.1| - 0.0069 16.7 6.3 0.022 15.1 4.3 1.8 1 0 0 1 1 1 1 SlyX Med4 PF10018.4 gi|433593423|ref|YP_007296164.1| - 0.012 15.0 6.1 0.022 14.1 4.3 1.4 1 0 0 1 1 1 0 Vitamin-D-receptor interacting Mediator subunit 4 IncA PF04156.9 gi|433593423|ref|YP_007296164.1| - 0.013 15.1 9.6 0.032 13.8 6.6 1.6 1 0 0 1 1 1 0 IncA protein TMF_DNA_bd PF12329.3 gi|433593423|ref|YP_007296164.1| - 0.016 14.9 13.4 0.03 14.1 9.3 1.4 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding AAA_13 PF13166.1 gi|433593423|ref|YP_007296164.1| - 0.021 13.3 2.3 0.033 12.6 1.6 1.2 1 0 0 1 1 1 0 AAA domain HOOK PF05622.7 gi|433593423|ref|YP_007296164.1| - 0.027 12.3 7.1 0.043 11.6 4.9 1.2 1 0 0 1 1 1 0 HOOK protein DUF4407 PF14362.1 gi|433593423|ref|YP_007296164.1| - 0.034 13.0 1.7 0.059 12.3 1.2 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) TBPIP PF07106.8 gi|433593423|ref|YP_007296164.1| - 0.036 13.6 4.5 0.082 12.4 3.1 1.5 1 0 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) DUF3552 PF12072.3 gi|433593423|ref|YP_007296164.1| - 0.056 12.6 9.5 0.1 11.7 6.6 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3552) Fib_alpha PF08702.5 gi|433593423|ref|YP_007296164.1| - 0.069 13.2 3.1 0.15 12.1 2.1 1.5 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family DUF641 PF04859.7 gi|433593423|ref|YP_007296164.1| - 0.076 12.7 5.8 0.14 11.8 4.0 1.4 1 0 0 1 1 1 0 Plant protein of unknown function (DUF641) Fmp27_WPPW PF10359.4 gi|433593423|ref|YP_007296164.1| - 0.11 10.9 4.0 0.16 10.3 2.8 1.1 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain bZIP_1 PF00170.16 gi|433593423|ref|YP_007296164.1| - 0.11 12.5 10.1 0.091 12.7 5.1 2.1 1 1 1 2 2 2 0 bZIP transcription factor DUF724 PF05266.9 gi|433593423|ref|YP_007296164.1| - 0.14 11.7 5.6 0.24 11.0 3.9 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF724) PspA_IM30 PF04012.7 gi|433593423|ref|YP_007296164.1| - 0.15 11.4 8.8 0.35 10.1 6.1 1.6 1 0 0 1 1 1 0 PspA/IM30 family HemX PF04375.9 gi|433593423|ref|YP_007296164.1| - 0.17 10.4 3.0 0.31 9.5 2.1 1.3 1 0 0 1 1 1 0 HemX DUF972 PF06156.8 gi|433593423|ref|YP_007296164.1| - 0.18 12.1 7.0 0.19 12.0 3.7 1.8 2 0 0 2 2 1 0 Protein of unknown function (DUF972) DUF3186 PF11382.3 gi|433593423|ref|YP_007296164.1| - 0.22 10.6 3.2 0.37 9.8 2.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3186) Spc7 PF08317.6 gi|433593423|ref|YP_007296164.1| - 0.32 9.5 6.4 0.59 8.7 4.4 1.3 1 0 0 1 1 1 0 Spc7 kinetochore protein Atg14 PF10186.4 gi|433593423|ref|YP_007296164.1| - 0.39 9.6 8.6 0.095 11.6 3.8 1.5 2 0 0 2 2 1 0 UV radiation resistance protein and autophagy-related subunit 14 DUF3450 PF11932.3 gi|433593423|ref|YP_007296164.1| - 0.41 9.8 5.8 1.3 8.2 4.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3450) Mnd1 PF03962.10 gi|433593423|ref|YP_007296164.1| - 0.41 10.2 5.9 1.4 8.5 4.1 1.8 1 0 0 1 1 1 0 Mnd1 family zf-IS66 PF13005.2 gi|433593423|ref|YP_007296164.1| - 0.42 10.6 14.3 0.18 11.7 6.7 2.7 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 APG6 PF04111.7 gi|433593423|ref|YP_007296164.1| - 0.48 9.4 7.1 0.83 8.6 4.9 1.3 1 0 0 1 1 1 0 Autophagy protein Apg6 TMF_TATA_bd PF12325.3 gi|433593423|ref|YP_007296164.1| - 0.55 9.9 11.6 1.3 8.7 8.0 1.6 1 0 0 1 1 1 0 TATA element modulatory factor 1 TATA binding FemAB PF02388.11 gi|433593423|ref|YP_007296164.1| - 0.56 8.8 5.4 0.83 8.2 3.7 1.1 1 0 0 1 1 1 0 FemAB family V_ATPase_I PF01496.14 gi|433593423|ref|YP_007296164.1| - 0.61 7.8 3.8 0.84 7.4 2.7 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family XhlA PF10779.4 gi|433593423|ref|YP_007296164.1| - 0.86 9.5 7.9 2.3 8.1 5.5 1.7 1 0 0 1 1 1 0 Haemolysin XhlA Spc24 PF08286.6 gi|433593423|ref|YP_007296164.1| - 1.1 9.0 6.4 2.2 7.9 4.4 1.5 1 0 0 1 1 1 0 Spc24 subunit of Ndc80 FliD_C PF07195.7 gi|433593423|ref|YP_007296164.1| - 1.1 8.4 3.4 2 7.6 2.4 1.3 1 0 0 1 1 1 0 Flagellar hook-associated protein 2 C-terminus CCDC-167 PF15188.1 gi|433593423|ref|YP_007296164.1| - 1.4 8.8 10.8 0.47 10.4 1.7 2.6 1 1 1 2 2 2 0 Coiled-coil domain-containing protein 167 DUF3584 PF12128.3 gi|433593423|ref|YP_007296164.1| - 5.9 4.0 9.8 0.85 6.8 4.1 1.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3584) DDE_Tnp_1 PF01609.16 gi|433593424|ref|YP_007296165.1| - 9.4e-11 41.6 2.7 1.7e-10 40.8 1.9 1.4 1 0 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.6 gi|433593424|ref|YP_007296165.1| - 0.021 14.7 0.1 0.061 13.2 0.1 1.8 1 0 0 1 1 1 0 Transposase domain (DUF772) DDE_Tnp_1_assoc PF13808.1 gi|433593424|ref|YP_007296165.1| - 0.09 12.4 0.2 0.18 11.5 0.1 1.6 1 0 0 1 1 1 0 DDE_Tnp_1-associated DDE_Tnp_1 PF01609.16 gi|433593425|ref|YP_007296166.1| - 1.3e-25 90.1 0.0 1.8e-25 89.7 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_2 PF04693.7 gi|433593425|ref|YP_007296166.1| - 0.0012 17.9 0.1 0.0018 17.3 0.1 1.2 1 0 0 1 1 1 1 Archaeal putative transposase ISC1217 DDE_Tnp_1_2 PF13586.1 gi|433593425|ref|YP_007296166.1| - 0.0082 16.3 0.0 0.023 14.8 0.0 1.7 1 0 0 1 1 1 1 Transposase DDE domain DUF2249 PF10006.4 gi|433593425|ref|YP_007296166.1| - 0.022 14.3 0.2 0.067 12.7 0.1 1.9 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2249) MMS22L_N PF14910.1 gi|433593426|ref|YP_007296167.1| - 0.072 11.3 0.0 0.089 11.0 0.0 1.1 1 0 0 1 1 1 0 S-phase genomic integrity recombination mediator, N-terminal DDE_Tnp_IS66 PF03050.9 gi|433593427|ref|YP_007296168.1| - 8.1e-53 179.3 0.1 8.1e-53 179.3 0.1 1.6 2 0 0 2 2 2 1 Transposase IS66 family bZIP_1 PF00170.16 gi|433593427|ref|YP_007296168.1| - 0.00075 19.4 5.9 0.0016 18.3 4.1 1.6 1 0 0 1 1 1 1 bZIP transcription factor DASH_Spc34 PF08657.5 gi|433593427|ref|YP_007296168.1| - 0.0029 17.2 3.5 0.014 15.0 3.0 1.6 2 0 0 2 2 2 1 DASH complex subunit Spc34 GAS PF13851.1 gi|433593427|ref|YP_007296168.1| - 0.0039 16.4 4.5 0.0075 15.4 3.1 1.4 1 0 0 1 1 1 1 Growth-arrest specific micro-tubule binding Shugoshin_N PF07558.6 gi|433593427|ref|YP_007296168.1| - 0.0078 15.9 2.6 0.016 14.8 1.8 1.5 1 0 0 1 1 1 1 Shugoshin N-terminal coiled-coil region Tropomyosin_1 PF12718.2 gi|433593427|ref|YP_007296168.1| - 0.009 15.8 5.1 0.019 14.7 3.6 1.5 1 0 0 1 1 1 1 Tropomyosin like MCC-bdg_PDZ PF10506.4 gi|433593427|ref|YP_007296168.1| - 0.0093 15.7 4.7 0.023 14.4 3.3 1.7 1 0 0 1 1 1 1 PDZ domain of MCC-2 bdg protein for Usher syndrome Transposase_mut PF00872.13 gi|433593427|ref|YP_007296168.1| - 0.0096 14.5 0.1 0.017 13.6 0.0 1.3 1 0 0 1 1 1 1 Transposase, Mutator family DUF2681 PF10883.3 gi|433593427|ref|YP_007296168.1| - 0.017 15.3 1.3 0.055 13.6 0.6 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2681) IncA PF04156.9 gi|433593427|ref|YP_007296168.1| - 0.017 14.6 5.4 0.048 13.2 3.8 1.7 1 0 0 1 1 1 0 IncA protein TMF_TATA_bd PF12325.3 gi|433593427|ref|YP_007296168.1| - 0.019 14.6 10.1 0.019 14.6 7.0 1.7 2 0 0 2 2 1 0 TATA element modulatory factor 1 TATA binding CENP-F_leu_zip PF10473.4 gi|433593427|ref|YP_007296168.1| - 0.036 13.9 8.3 0.091 12.6 5.8 1.6 1 0 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Spc24 PF08286.6 gi|433593427|ref|YP_007296168.1| - 0.057 13.1 3.0 0.12 12.0 2.1 1.5 1 0 0 1 1 1 0 Spc24 subunit of Ndc80 TBPIP PF07106.8 gi|433593427|ref|YP_007296168.1| - 0.075 12.5 2.7 0.18 11.3 1.9 1.6 1 0 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Med4 PF10018.4 gi|433593427|ref|YP_007296168.1| - 0.078 12.3 4.6 0.12 11.7 2.7 1.6 2 0 0 2 2 1 0 Vitamin-D-receptor interacting Mediator subunit 4 DUF972 PF06156.8 gi|433593427|ref|YP_007296168.1| - 0.08 13.2 2.3 0.21 11.9 1.6 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF972) CBF_beta PF02312.12 gi|433593427|ref|YP_007296168.1| - 0.087 12.4 2.1 0.16 11.5 1.5 1.3 1 0 0 1 1 1 0 Core binding factor beta subunit Daxx PF03344.10 gi|433593427|ref|YP_007296168.1| - 0.17 10.3 7.7 0.24 9.8 5.3 1.1 1 0 0 1 1 1 0 Daxx Family bZIP_2 PF07716.10 gi|433593427|ref|YP_007296168.1| - 0.18 11.6 8.5 0.46 10.3 5.7 1.9 1 1 0 1 1 1 0 Basic region leucine zipper DDE_Tnp_IS240 PF13610.1 gi|433593427|ref|YP_007296168.1| - 0.28 11.1 0.1 0.28 11.1 0.1 1.9 2 1 0 2 2 1 0 DDE domain NYD-SP28_assoc PF14775.1 gi|433593427|ref|YP_007296168.1| - 0.29 10.8 5.4 0.92 9.2 3.8 1.9 1 0 0 1 1 1 0 Sperm tail C-terminal domain V_ATPase_I PF01496.14 gi|433593427|ref|YP_007296168.1| - 0.41 8.4 2.1 0.59 7.9 1.4 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family DUF3450 PF11932.3 gi|433593427|ref|YP_007296168.1| - 0.44 9.7 4.2 1.1 8.4 2.9 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3450) CtIP_N PF10482.4 gi|433593427|ref|YP_007296168.1| - 0.55 10.0 9.6 0.14 11.9 4.2 1.8 2 0 0 2 2 1 0 Tumour-suppressor protein CtIP N-terminal domain APG6 PF04111.7 gi|433593427|ref|YP_007296168.1| - 1.1 8.2 3.7 1.9 7.4 2.6 1.3 1 0 0 1 1 1 0 Autophagy protein Apg6 DivIC PF04977.10 gi|433593427|ref|YP_007296168.1| - 2.8 7.5 8.6 0.97 8.9 2.9 2.5 3 0 0 3 3 2 0 Septum formation initiator MacB_PCD PF12704.2 gi|433593429|ref|YP_007296170.1| - 2.6e-23 82.8 1.7 2.6e-23 82.8 1.2 2.3 3 0 0 3 3 3 1 MacB-like periplasmic core domain FtsX PF02687.16 gi|433593429|ref|YP_007296170.1| - 4.6e-11 42.5 13.3 4.6e-11 42.5 9.2 2.2 2 0 0 2 2 2 1 FtsX-like permease family MacB_PCD PF12704.2 gi|433593430|ref|YP_007296171.1| - 1.7e-11 44.1 6.5 1.7e-11 44.1 4.5 1.9 2 0 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.16 gi|433593430|ref|YP_007296171.1| - 1.2e-08 34.7 17.9 6.6e-07 29.1 10.4 2.2 2 0 0 2 2 2 2 FtsX-like permease family ABC_tran PF00005.22 gi|433593431|ref|YP_007296172.1| - 2.5e-35 121.7 0.0 3.5e-35 121.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|433593431|ref|YP_007296172.1| - 3.6e-08 33.7 0.0 0.0074 16.2 0.0 2.1 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|433593431|ref|YP_007296172.1| - 1.3e-05 24.5 0.2 0.0016 17.7 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|433593431|ref|YP_007296172.1| - 0.00025 20.5 0.2 0.00048 19.5 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_33 PF13671.1 gi|433593431|ref|YP_007296172.1| - 0.0011 18.8 0.1 0.0029 17.4 0.0 1.8 2 0 0 2 2 2 1 AAA domain DUF258 PF03193.11 gi|433593431|ref|YP_007296172.1| - 0.0013 17.9 0.0 0.002 17.3 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_16 PF13191.1 gi|433593431|ref|YP_007296172.1| - 0.002 18.1 3.1 0.0044 17.0 2.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_18 PF13238.1 gi|433593431|ref|YP_007296172.1| - 0.0021 18.3 0.9 0.059 13.6 1.3 2.4 2 1 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|433593431|ref|YP_007296172.1| - 0.0061 16.2 0.6 0.04 13.6 0.0 2.6 2 1 0 2 2 2 1 Part of AAA domain AAA_17 PF13207.1 gi|433593431|ref|YP_007296172.1| - 0.0075 17.0 0.3 0.014 16.1 0.2 1.6 1 1 0 1 1 1 1 AAA domain SbcCD_C PF13558.1 gi|433593431|ref|YP_007296172.1| - 0.01 15.7 0.1 0.13 12.1 0.1 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_25 PF13481.1 gi|433593431|ref|YP_007296172.1| - 0.011 15.1 0.5 0.023 14.1 0.3 1.7 1 1 0 1 1 1 0 AAA domain Miro PF08477.8 gi|433593431|ref|YP_007296172.1| - 0.029 14.8 0.0 0.07 13.6 0.0 1.6 2 0 0 2 2 1 0 Miro-like protein ArgK PF03308.11 gi|433593431|ref|YP_007296172.1| - 0.033 12.9 0.1 0.058 12.1 0.1 1.3 1 0 0 1 1 1 0 ArgK protein SRP54 PF00448.17 gi|433593431|ref|YP_007296172.1| - 0.043 13.2 0.0 0.62 9.4 0.0 2.1 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain MobB PF03205.9 gi|433593431|ref|YP_007296172.1| - 0.069 12.8 0.0 0.24 11.1 0.0 1.9 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B Rad17 PF03215.10 gi|433593431|ref|YP_007296172.1| - 0.11 11.2 0.0 0.15 10.7 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA_23 PF13476.1 gi|433593431|ref|YP_007296172.1| - 0.12 12.6 0.1 0.21 11.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain NTPase_1 PF03266.10 gi|433593431|ref|YP_007296172.1| - 0.13 11.9 0.2 2.5 7.7 0.0 2.2 2 0 0 2 2 2 0 NTPase AAA_22 PF13401.1 gi|433593431|ref|YP_007296172.1| - 0.13 12.3 0.3 0.32 11.1 0.2 1.9 1 1 0 1 1 1 0 AAA domain DICT PF10069.4 gi|433593432|ref|YP_007296173.1| - 0.1 12.1 0.1 0.27 10.7 0.0 1.7 2 0 0 2 2 2 0 Sensory domain found in DIguanylate Cyclases & Two-component systems PKD PF00801.15 gi|433593433|ref|YP_007296174.1| - 5.4e-11 42.0 5.7 5.8e-11 41.9 1.3 2.9 2 0 0 2 2 2 1 PKD domain Ig_2 PF13895.1 gi|433593433|ref|YP_007296174.1| - 0.012 15.7 1.3 0.035 14.2 0.1 2.4 3 0 0 3 3 3 0 Immunoglobulin domain IgG_binding_B PF01378.12 gi|433593433|ref|YP_007296174.1| - 0.042 13.6 3.0 0.11 12.3 0.4 3.0 2 0 0 2 2 2 0 B domain CENP-B_dimeris PF09026.5 gi|433593433|ref|YP_007296174.1| - 0.076 13.2 0.0 0.076 13.2 0.0 3.0 4 0 0 4 4 4 0 Centromere protein B dimerisation domain DUF58 PF01882.13 gi|433593434|ref|YP_007296175.1| - 5.1e-22 77.8 1.7 6.5e-22 77.4 0.1 2.0 2 0 0 2 2 2 1 Protein of unknown function DUF58 ABC2_membrane PF01061.19 gi|433593435|ref|YP_007296176.1| - 8.8 5.4 9.8 0.8 8.8 2.6 1.9 1 1 1 2 2 2 0 ABC-2 type transporter ApoO PF09769.4 gi|433593436|ref|YP_007296177.1| - 0.022 14.4 2.7 0.087 12.5 1.7 1.9 1 1 1 2 2 2 0 Apolipoprotein O Gly-zipper_OmpA PF13436.1 gi|433593436|ref|YP_007296177.1| - 0.14 11.8 3.3 0.1 12.2 0.3 2.0 2 1 0 2 2 2 0 Glycine-zipper containing OmpA-like membrane domain DUF2387 PF09526.5 gi|433593440|ref|YP_007296181.1| - 0.024 14.5 0.8 0.044 13.6 0.6 1.5 1 1 0 1 1 1 0 Probable metal-binding protein (DUF2387) zf-dskA_traR PF01258.12 gi|433593440|ref|YP_007296181.1| - 0.054 13.2 3.3 0.14 11.9 2.3 1.6 1 1 0 1 1 1 0 Prokaryotic dksA/traR C4-type zinc finger TFIIS_C PF01096.13 gi|433593440|ref|YP_007296181.1| - 0.12 11.9 0.1 0.12 11.9 0.1 1.8 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) FlgD_ig PF13860.1 gi|433593441|ref|YP_007296182.1| - 0.00012 21.7 0.5 0.0005 19.7 0.4 2.1 1 0 0 1 1 1 1 FlgD Ig-like domain YtkA PF13115.1 gi|433593441|ref|YP_007296182.1| - 0.00044 20.5 2.3 0.00044 20.5 1.6 2.9 3 1 1 4 4 4 1 YtkA-like GBS_Bsp-like PF08481.5 gi|433593441|ref|YP_007296182.1| - 0.0024 17.7 0.3 0.022 14.6 0.0 2.3 2 0 0 2 2 2 1 GBS Bsp-like repeat Ebola_NP PF05505.7 gi|433593441|ref|YP_007296182.1| - 2.1 6.3 4.8 3 5.7 3.3 1.3 1 0 0 1 1 1 0 Ebola nucleoprotein Daxx PF03344.10 gi|433593441|ref|YP_007296182.1| - 7.2 4.9 12.3 12 4.2 8.5 1.3 1 0 0 1 1 1 0 Daxx Family DDE_Tnp_1 PF01609.16 gi|433593445|ref|YP_007296186.1| - 9.4e-11 41.6 2.7 1.7e-10 40.8 1.9 1.4 1 0 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.6 gi|433593445|ref|YP_007296186.1| - 0.021 14.7 0.1 0.061 13.2 0.1 1.8 1 0 0 1 1 1 0 Transposase domain (DUF772) DDE_Tnp_1_assoc PF13808.1 gi|433593445|ref|YP_007296186.1| - 0.09 12.4 0.2 0.18 11.5 0.1 1.6 1 0 0 1 1 1 0 DDE_Tnp_1-associated HATPase_c_3 PF13589.1 gi|433593446|ref|YP_007296187.1| - 2.8e-12 46.4 0.1 4.5e-12 45.7 0.1 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c PF02518.21 gi|433593446|ref|YP_007296187.1| - 0.085 12.5 0.0 0.13 11.9 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Staph_haemo PF05480.6 gi|433593446|ref|YP_007296187.1| - 0.089 12.4 0.0 0.21 11.3 0.0 1.6 1 0 0 1 1 1 0 Staphylococcus haemolytic protein TrmB PF01978.14 gi|433593447|ref|YP_007296188.1| - 2.6e-08 33.4 0.0 4.5e-08 32.6 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Cdc6_C PF09079.6 gi|433593447|ref|YP_007296188.1| - 0.00028 20.5 0.0 0.00051 19.7 0.0 1.4 1 0 0 1 1 1 1 CDC6, C terminal HTH_20 PF12840.2 gi|433593447|ref|YP_007296188.1| - 0.00035 20.2 0.0 0.00078 19.2 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|433593447|ref|YP_007296188.1| - 0.00094 18.5 0.0 0.0018 17.5 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding DUF4423 PF14394.1 gi|433593447|ref|YP_007296188.1| - 0.0056 16.2 0.0 0.0073 15.8 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) MarR_2 PF12802.2 gi|433593447|ref|YP_007296188.1| - 0.01 15.4 0.0 0.019 14.6 0.0 1.6 1 0 0 1 1 1 0 MarR family Penicillinase_R PF03965.11 gi|433593447|ref|YP_007296188.1| - 0.011 15.7 0.0 0.017 15.2 0.0 1.3 1 0 0 1 1 1 0 Penicillinase repressor HTH_11 PF08279.7 gi|433593447|ref|YP_007296188.1| - 0.012 15.2 0.0 0.022 14.3 0.0 1.5 1 0 0 1 1 1 0 HTH domain Rrf2 PF02082.15 gi|433593447|ref|YP_007296188.1| - 0.018 15.1 0.0 0.23 11.5 0.0 2.1 2 0 0 2 2 2 0 Transcriptional regulator FaeA PF04703.7 gi|433593447|ref|YP_007296188.1| - 0.021 14.9 0.0 0.044 13.9 0.0 1.5 1 0 0 1 1 1 0 FaeA-like protein HTH_29 PF13551.1 gi|433593447|ref|YP_007296188.1| - 0.024 14.7 0.1 0.049 13.7 0.0 1.7 1 1 0 1 1 1 0 Winged helix-turn helix HTH_IclR PF09339.5 gi|433593447|ref|YP_007296188.1| - 0.031 13.8 0.0 0.12 12.0 0.0 1.9 2 0 0 2 2 2 0 IclR helix-turn-helix domain ComA PF02679.10 gi|433593447|ref|YP_007296188.1| - 0.1 11.5 0.0 0.13 11.2 0.0 1.4 1 1 0 1 1 1 0 (2R)-phospho-3-sulfolactate synthase (ComA) DUF2250 PF10007.4 gi|433593447|ref|YP_007296188.1| - 0.13 12.1 0.0 0.35 10.7 0.0 1.8 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) DDE_Tnp_1 PF01609.16 gi|433593449|ref|YP_007296190.1| - 4.2e-17 62.4 0.0 6.1e-17 61.8 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.6 gi|433593449|ref|YP_007296190.1| - 0.023 14.5 0.0 0.043 13.7 0.0 1.4 1 0 0 1 1 1 0 Transposase domain (DUF772) UBA PF00627.26 gi|433593450|ref|YP_007296191.1| - 0.094 12.5 0.1 2.8 7.8 0.0 2.1 2 0 0 2 2 2 0 UBA/TS-N domain DUF955 PF06114.8 gi|433593451|ref|YP_007296192.1| - 0.00025 20.7 0.0 0.00041 20.0 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF955) SprT-like PF10263.4 gi|433593451|ref|YP_007296192.1| - 0.0011 18.6 0.9 0.086 12.5 0.0 2.8 2 1 1 3 3 3 1 SprT-like family Peptidase_MA_2 PF13485.1 gi|433593451|ref|YP_007296192.1| - 0.0075 16.3 0.1 0.046 13.7 0.0 2.0 2 0 0 2 2 2 1 Peptidase MA superfamily DUF2268 PF10026.4 gi|433593451|ref|YP_007296192.1| - 0.14 11.5 0.1 0.31 10.4 0.0 1.6 2 0 0 2 2 2 0 Predicted Zn-dependent protease (DUF2268) HTH_7 PF02796.10 gi|433593453|ref|YP_007296194.1| - 8e-07 28.8 0.0 1.8e-06 27.7 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase MarR_2 PF12802.2 gi|433593453|ref|YP_007296194.1| - 0.00014 21.4 0.2 0.00032 20.2 0.0 1.7 2 0 0 2 2 2 1 MarR family TrmB PF01978.14 gi|433593453|ref|YP_007296194.1| - 0.0002 20.9 0.0 0.00053 19.6 0.0 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.7 gi|433593453|ref|YP_007296194.1| - 0.00021 20.8 0.4 0.0015 18.1 0.0 2.4 2 1 1 3 3 3 1 HTH domain GntR PF00392.16 gi|433593453|ref|YP_007296194.1| - 0.00062 19.1 0.6 0.0036 16.6 0.0 2.3 2 1 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_23 PF13384.1 gi|433593453|ref|YP_007296194.1| - 0.0023 17.5 0.0 0.0046 16.5 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_27 PF13463.1 gi|433593453|ref|YP_007296194.1| - 0.0047 17.2 0.1 0.013 15.8 0.0 1.8 1 0 0 1 1 1 1 Winged helix DNA-binding domain Histone_HNS PF00816.16 gi|433593453|ref|YP_007296194.1| - 0.007 16.8 2.1 0.015 15.8 1.5 1.6 1 0 0 1 1 1 1 H-NS histone family HTH_20 PF12840.2 gi|433593453|ref|YP_007296194.1| - 0.012 15.4 0.1 0.035 13.9 0.0 1.8 2 0 0 2 2 1 0 Helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|433593453|ref|YP_007296194.1| - 0.013 15.2 0.0 0.11 12.3 0.0 2.1 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain WXG100 PF06013.7 gi|433593453|ref|YP_007296194.1| - 0.026 14.5 2.5 0.19 11.7 0.3 2.3 2 1 0 2 2 2 0 Proteins of 100 residues with WXG Bacillus_HBL PF05791.6 gi|433593453|ref|YP_007296194.1| - 0.03 13.6 0.5 0.045 13.1 0.3 1.4 1 0 0 1 1 1 0 Bacillus haemolytic enterotoxin (HBL) Rrf2 PF02082.15 gi|433593453|ref|YP_007296194.1| - 0.038 14.0 0.0 0.44 10.6 0.0 2.2 2 0 0 2 2 2 0 Transcriptional regulator UPF0122 PF04297.9 gi|433593453|ref|YP_007296194.1| - 0.048 13.6 1.4 0.5 10.4 0.4 2.6 1 1 1 2 2 2 0 Putative helix-turn-helix protein, YlxM / p13 like HTH_38 PF13936.1 gi|433593453|ref|YP_007296194.1| - 0.068 12.7 0.0 0.16 11.5 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Fe_dep_repress PF01325.14 gi|433593453|ref|YP_007296194.1| - 0.084 12.8 0.0 0.16 11.9 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_IclR PF09339.5 gi|433593453|ref|YP_007296194.1| - 0.09 12.3 0.0 0.18 11.4 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain Syntaxin-6_N PF09177.6 gi|433593453|ref|YP_007296194.1| - 0.16 12.3 3.7 0.27 11.6 2.1 1.6 1 1 0 1 1 1 0 Syntaxin 6, N-terminal Lge1 PF11488.3 gi|433593453|ref|YP_007296194.1| - 0.27 11.4 3.6 2.2 8.5 1.1 2.6 2 1 0 2 2 2 0 Transcriptional regulatory protein LGE1 Ribosomal_L29 PF00831.18 gi|433593453|ref|YP_007296194.1| - 2.1 8.0 4.7 0.95 9.1 1.2 2.0 2 0 0 2 2 2 0 Ribosomal L29 protein TBP PF00352.16 gi|433593455|ref|YP_007296196.1| - 1.6e-61 203.6 0.0 1.4e-30 104.5 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.3 gi|433593455|ref|YP_007296196.1| - 0.00018 21.5 0.0 0.62 10.1 0.0 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) DZR PF12773.2 gi|433593456|ref|YP_007296197.1| - 0.0051 16.5 1.2 0.0058 16.4 0.9 1.1 1 0 0 1 1 1 1 Double zinc ribbon Sgf11 PF08209.6 gi|433593456|ref|YP_007296197.1| - 0.0062 15.8 3.8 0.045 13.0 0.2 2.2 2 0 0 2 2 2 1 Sgf11 (transcriptional regulation protein) zf-ribbon_3 PF13248.1 gi|433593456|ref|YP_007296197.1| - 0.0071 15.5 1.7 0.37 10.0 0.0 2.1 2 0 0 2 2 2 1 zinc-ribbon domain zf-Mss51 PF13824.1 gi|433593456|ref|YP_007296197.1| - 0.0099 15.7 3.7 0.6 10.0 0.3 2.0 1 1 1 2 2 2 2 Zinc-finger of mitochondrial splicing suppressor 51 HypA PF01155.14 gi|433593456|ref|YP_007296197.1| - 0.017 14.8 1.0 0.017 14.8 0.7 1.0 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family A2L_zn_ribbon PF08792.5 gi|433593456|ref|YP_007296197.1| - 0.023 14.1 3.4 0.032 13.6 2.3 1.3 1 1 0 1 1 1 0 A2L zinc ribbon domain zf-HIT PF04438.11 gi|433593456|ref|YP_007296197.1| - 0.033 13.8 2.4 0.076 12.6 0.2 2.0 2 0 0 2 2 2 0 HIT zinc finger zinc_ribbon_2 PF13240.1 gi|433593456|ref|YP_007296197.1| - 0.034 13.6 4.8 0.098 12.1 3.3 1.7 1 1 0 1 1 1 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|433593456|ref|YP_007296197.1| - 0.056 13.1 2.6 0.058 13.0 1.8 1.1 1 0 0 1 1 1 0 Putative transposase DNA-binding domain GCC2_GCC3 PF07699.8 gi|433593456|ref|YP_007296197.1| - 0.078 12.5 1.5 0.091 12.3 1.1 1.2 1 0 0 1 1 1 0 GCC2 and GCC3 TF_Zn_Ribbon PF08271.7 gi|433593456|ref|YP_007296197.1| - 0.093 12.0 3.1 0.18 11.1 2.1 1.5 1 1 0 1 1 1 0 TFIIB zinc-binding Zn_Tnp_IS91 PF14319.1 gi|433593456|ref|YP_007296197.1| - 0.12 11.8 3.0 0.12 11.9 2.1 1.0 1 0 0 1 1 1 0 Transposase zinc-binding domain zf-C4_Topoisom PF01396.14 gi|433593456|ref|YP_007296197.1| - 0.13 11.7 2.2 0.16 11.4 1.6 1.3 1 0 0 1 1 1 0 Topoisomerase DNA binding C4 zinc finger Ribosomal_L37e PF01907.14 gi|433593456|ref|YP_007296197.1| - 0.13 12.0 7.2 0.16 11.7 5.0 1.3 1 1 0 1 1 1 0 Ribosomal protein L37e C1_1 PF00130.17 gi|433593456|ref|YP_007296197.1| - 0.14 11.8 4.9 0.29 10.8 3.4 1.5 1 1 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) FhuF_C PF11575.3 gi|433593456|ref|YP_007296197.1| - 0.17 11.5 3.0 5.2 6.8 0.3 2.2 2 0 0 2 2 2 0 FhuF 2Fe-2S C-terminal domain Spt4 PF06093.8 gi|433593456|ref|YP_007296197.1| - 0.22 11.3 1.6 0.39 10.6 1.1 1.5 1 1 0 1 1 1 0 Spt4/RpoE2 zinc finger DUF1451 PF07295.6 gi|433593456|ref|YP_007296197.1| - 0.24 11.1 2.9 0.25 11.0 2.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1451) DNA_RNApol_7kD PF03604.8 gi|433593456|ref|YP_007296197.1| - 0.25 10.8 3.7 0.38 10.2 2.5 1.3 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit zf-CCHC_6 PF15288.1 gi|433593456|ref|YP_007296197.1| - 0.3 10.7 3.3 0.77 9.4 0.1 2.1 2 0 0 2 2 2 0 Zinc knuckle FYVE PF01363.16 gi|433593456|ref|YP_007296197.1| - 0.33 10.8 3.4 0.36 10.7 2.4 1.2 1 0 0 1 1 1 0 FYVE zinc finger Zn_ribbon_recom PF13408.1 gi|433593456|ref|YP_007296197.1| - 0.49 10.6 4.1 0.61 10.3 2.8 1.2 1 0 0 1 1 1 0 Recombinase zinc beta ribbon domain DUF2072 PF09845.4 gi|433593456|ref|YP_007296197.1| - 0.58 10.0 2.7 0.65 9.9 1.9 1.0 1 0 0 1 1 1 0 Zn-ribbon containing protein (DUF2072) zf-C2HC5 PF06221.8 gi|433593456|ref|YP_007296197.1| - 0.9 9.3 5.8 4.7 7.0 4.1 1.8 1 1 0 1 1 1 0 Putative zinc finger motif, C2HC5-type Zn_Tnp_IS1595 PF12760.2 gi|433593456|ref|YP_007296197.1| - 0.97 9.2 5.0 2.6 7.9 3.5 1.7 1 1 0 1 1 1 0 Transposase zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|433593456|ref|YP_007296197.1| - 1.2 9.1 4.0 4.2 7.4 2.8 1.8 1 1 0 1 1 1 0 Zinc ribbon domain zf-CCHC_4 PF14392.1 gi|433593456|ref|YP_007296197.1| - 2.7 7.7 5.6 3.6 7.3 0.4 2.1 1 1 1 2 2 2 0 Zinc knuckle DUF2800 PF10926.3 gi|433593457|ref|YP_007296198.1| - 0.00056 19.1 0.2 0.0015 17.7 0.0 1.6 1 1 0 2 2 2 1 Protein of unknown function (DUF2800) DUF2383 PF09537.5 gi|433593457|ref|YP_007296198.1| - 0.007 16.6 1.5 0.03 14.5 0.2 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF2383) DivIC PF04977.10 gi|433593457|ref|YP_007296198.1| - 0.025 14.0 0.4 0.092 12.2 0.2 2.0 2 0 0 2 2 2 0 Septum formation initiator DUF3396 PF11876.3 gi|433593457|ref|YP_007296198.1| - 0.074 12.1 0.0 0.13 11.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3396) Phasin PF05597.6 gi|433593457|ref|YP_007296198.1| - 0.34 10.6 5.5 0.59 9.9 3.8 1.3 1 0 0 1 1 1 0 Poly(hydroxyalcanoate) granule associated protein (phasin) DUF4241 PF14025.1 gi|433593458|ref|YP_007296199.1| - 0.057 13.1 0.0 0.057 13.1 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4241) DDE_Tnp_IS1595 PF12762.2 gi|433593459|ref|YP_007296200.1| - 1.2e-21 77.1 0.0 1.9e-21 76.5 0.0 1.3 1 0 0 1 1 1 1 ISXO2-like transposase domain Zn_Tnp_IS1595 PF12760.2 gi|433593459|ref|YP_007296200.1| - 7.8e-10 38.4 0.9 1.5e-09 37.4 0.6 1.5 1 0 0 1 1 1 1 Transposase zinc-ribbon domain Zn_Tnp_IS1 PF03811.8 gi|433593459|ref|YP_007296200.1| - 0.00023 20.5 6.2 0.00027 20.3 3.2 1.9 2 0 0 2 2 2 1 InsA N-terminal domain DUF2089 PF09862.4 gi|433593459|ref|YP_007296200.1| - 0.029 14.1 0.0 0.045 13.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2089) zf-Dof PF02701.10 gi|433593459|ref|YP_007296200.1| - 0.067 13.1 4.5 0.13 12.1 3.1 1.5 1 0 0 1 1 1 0 Dof domain, zinc finger zf-ISL3 PF14690.1 gi|433593459|ref|YP_007296200.1| - 0.27 11.3 7.2 1.6 8.8 0.3 2.7 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-C2H2_6 PF13912.1 gi|433593459|ref|YP_007296200.1| - 1.8 8.5 4.6 1.1 9.2 0.2 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger bPH_2 PF03703.9 gi|433593460|ref|YP_007296201.1| - 1.9e-11 43.8 0.0 3.1e-11 43.1 0.0 1.3 1 0 0 1 1 1 1 Bacterial PH domain 2CSK_N PF08521.5 gi|433593461|ref|YP_007296202.1| - 0.15 11.5 0.2 0.21 11.0 0.1 1.2 1 0 0 1 1 1 0 Two-component sensor kinase N-terminal PQQ_2 PF13360.1 gi|433593462|ref|YP_007296203.1| - 4.6e-34 117.9 5.6 5e-18 65.4 0.1 3.1 1 1 2 3 3 3 3 PQQ-like domain PQQ_3 PF13570.1 gi|433593462|ref|YP_007296203.1| - 1.4e-22 79.2 16.1 7.7e-05 22.8 0.1 8.3 8 0 0 8 8 8 6 PQQ-like domain PQQ PF01011.16 gi|433593462|ref|YP_007296203.1| - 2.9e-16 58.0 2.2 0.021 14.3 0.0 5.8 6 0 0 6 6 6 4 PQQ enzyme repeat PHZA_PHZB PF03284.8 gi|433593462|ref|YP_007296203.1| - 0.14 11.2 0.0 0.32 10.0 0.0 1.6 1 0 0 1 1 1 0 Phenazine biosynthesis protein A/B Cyto_ox_2 PF02322.10 gi|433593463|ref|YP_007296204.1| - 0.036 13.2 0.8 0.049 12.7 0.3 1.3 1 1 0 1 1 1 0 Cytochrome oxidase subunit II DDE_Tnp_1 PF01609.16 gi|433593464|ref|YP_007296205.1| - 5.6e-21 75.0 0.0 9.8e-21 74.2 0.0 1.4 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_4 PF13359.1 gi|433593464|ref|YP_007296205.1| - 1.2e-05 24.9 0.0 0.095 12.3 0.0 2.3 2 0 0 2 2 2 2 DDE superfamily endonuclease DDE_Tnp_1_2 PF13586.1 gi|433593464|ref|YP_007296205.1| - 1.4e-05 25.2 0.4 0.0035 17.4 0.2 2.7 2 0 0 2 2 2 1 Transposase DDE domain DUF772 PF05598.6 gi|433593464|ref|YP_007296205.1| - 3.1e-05 23.7 0.0 6.9e-05 22.6 0.0 1.6 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1_3 PF13612.1 gi|433593464|ref|YP_007296205.1| - 0.00073 19.3 0.1 0.022 14.5 0.0 2.3 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1_6 PF13751.1 gi|433593464|ref|YP_007296205.1| - 0.0012 18.8 0.2 0.0028 17.6 0.2 1.5 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_assoc PF13808.1 gi|433593464|ref|YP_007296205.1| - 0.026 14.1 0.3 0.21 11.3 0.0 2.6 3 0 0 3 3 3 0 DDE_Tnp_1-associated GPDPase_memb PF10110.4 gi|433593465|ref|YP_007296206.1| - 7.2e-06 25.4 0.4 1.2e-05 24.7 0.2 1.4 1 1 0 1 1 1 1 Membrane domain of glycerophosphoryl diester phosphodiesterase Dr_adhesin PF12393.3 gi|433593465|ref|YP_007296206.1| - 0.079 13.0 0.7 0.28 11.3 0.5 1.9 1 0 0 1 1 1 0 Dr family adhesin RHH_1 PF01402.16 gi|433593468|ref|YP_007296209.1| - 0.0096 15.7 0.6 0.019 14.8 0.4 1.5 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family IF2_N PF04760.10 gi|433593468|ref|YP_007296209.1| - 0.015 14.9 0.0 0.15 11.7 0.0 2.0 2 0 0 2 2 2 0 Translation initiation factor IF-2, N-terminal region HTH_40 PF14493.1 gi|433593468|ref|YP_007296209.1| - 0.06 13.5 0.2 0.076 13.2 0.1 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain RHH_3 PF12651.2 gi|433593468|ref|YP_007296209.1| - 0.11 12.2 1.2 0.15 11.8 0.2 1.8 2 0 0 2 2 2 0 Ribbon-helix-helix domain zinc_ribbon_2 PF13240.1 gi|433593470|ref|YP_007296211.1| - 0.018 14.5 9.9 0.035 13.5 1.5 3.3 3 0 0 3 3 3 0 zinc-ribbon domain zf-Mss51 PF13824.1 gi|433593470|ref|YP_007296211.1| - 0.071 12.9 7.4 15 5.5 0.1 3.5 2 1 1 3 3 3 0 Zinc-finger of mitochondrial splicing suppressor 51 RNA_POL_M_15KD PF02150.11 gi|433593470|ref|YP_007296211.1| - 0.15 11.7 4.4 1.2 8.8 0.1 3.4 3 0 0 3 3 3 0 RNA polymerases M/15 Kd subunit zf-ribbon_3 PF13248.1 gi|433593470|ref|YP_007296211.1| - 0.43 9.8 11.4 0.24 10.6 1.7 3.2 3 0 0 3 3 3 0 zinc-ribbon domain HypA PF01155.14 gi|433593470|ref|YP_007296211.1| - 0.78 9.4 3.4 6.9 6.3 0.3 2.3 2 0 0 2 2 2 0 Hydrogenase expression/synthesis hypA family DZR PF12773.2 gi|433593470|ref|YP_007296211.1| - 0.99 9.2 12.1 0.71 9.7 1.2 3.0 2 1 0 2 2 2 0 Double zinc ribbon GFA PF04828.9 gi|433593470|ref|YP_007296211.1| - 1.8 8.5 6.4 5.6 6.9 0.1 3.2 2 1 1 3 3 3 0 Glutathione-dependent formaldehyde-activating enzyme PhnA_Zn_Ribbon PF08274.7 gi|433593471|ref|YP_007296212.1| - 0.011 15.5 2.6 0.42 10.4 0.2 2.1 1 1 1 2 2 2 0 PhnA Zinc-Ribbon Laminin_N PF00055.12 gi|433593471|ref|YP_007296212.1| - 0.14 11.1 0.2 0.14 11.1 0.1 1.0 1 0 0 1 1 1 0 Laminin N-terminal (Domain VI) DDE_Tnp_1 PF01609.16 gi|433593472|ref|YP_007296213.1| - 8.1e-21 74.5 0.0 1.1e-20 74.0 0.0 1.1 1 0 0 1 1 1 1 Transposase DDE domain tRNA_anti-codon PF01336.20 gi|433593473|ref|YP_007296214.1| - 0.00072 19.3 0.0 0.0013 18.4 0.0 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain ALMS_motif PF15309.1 gi|433593473|ref|YP_007296214.1| - 0.16 11.8 4.0 0.26 11.0 2.8 1.4 1 0 0 1 1 1 0 ALMS motif BEX PF04538.7 gi|433593473|ref|YP_007296214.1| - 0.36 11.0 4.4 0.46 10.7 2.5 1.6 1 1 0 1 1 1 0 Brain expressed X-linked like family PLRV_ORF5 PF01690.12 gi|433593473|ref|YP_007296214.1| - 0.68 9.0 5.1 0.83 8.7 3.5 1.1 1 0 0 1 1 1 0 Potato leaf roll virus readthrough protein Frankia_peptide PF14407.1 gi|433593473|ref|YP_007296214.1| - 2.9 7.7 7.8 0.88 9.3 0.2 2.9 3 0 0 3 3 3 0 Ribosomally synthesized peptide prototyped by Frankia Franean1_4349. PadR PF03551.9 gi|433593476|ref|YP_007296217.1| - 1.6e-12 46.9 0.1 1.9e-12 46.7 0.1 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_45 PF14947.1 gi|433593476|ref|YP_007296217.1| - 0.0022 17.7 0.1 0.0029 17.3 0.1 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_27 PF13463.1 gi|433593476|ref|YP_007296217.1| - 0.0059 16.9 0.0 0.0077 16.5 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain DUF505 PF04458.7 gi|433593476|ref|YP_007296217.1| - 0.031 12.4 0.1 0.034 12.2 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF505) DUF4358 PF14270.1 gi|433593476|ref|YP_007296217.1| - 0.045 13.6 0.0 0.064 13.1 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4358) HTH_34 PF13601.1 gi|433593476|ref|YP_007296217.1| - 0.11 12.5 0.0 0.13 12.2 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain DDE_Tnp_IS66 PF03050.9 gi|433593478|ref|YP_007296219.1| - 2.8e-52 177.5 0.0 2.8e-52 177.5 0.0 2.1 2 0 0 2 2 2 1 Transposase IS66 family SlyX PF04102.7 gi|433593478|ref|YP_007296219.1| - 8.4e-09 35.6 7.0 2e-08 34.4 4.8 1.7 1 0 0 1 1 1 1 SlyX zf-IS66 PF13005.2 gi|433593478|ref|YP_007296219.1| - 0.00066 19.5 5.8 0.00066 19.5 4.0 2.5 2 0 0 2 2 1 1 zinc-finger binding domain of transposase IS66 Atg14 PF10186.4 gi|433593478|ref|YP_007296219.1| - 0.0012 17.9 8.2 0.0019 17.1 5.7 1.3 1 0 0 1 1 1 1 UV radiation resistance protein and autophagy-related subunit 14 Fmp27_WPPW PF10359.4 gi|433593478|ref|YP_007296219.1| - 0.0026 16.2 7.0 0.0037 15.7 4.8 1.1 1 0 0 1 1 1 1 RNA pol II promoter Fmp27 protein domain MscS_porin PF12795.2 gi|433593478|ref|YP_007296219.1| - 0.0057 16.0 8.0 0.0091 15.3 5.6 1.3 1 0 0 1 1 1 1 Mechanosensitive ion channel porin domain DUF16 PF01519.11 gi|433593478|ref|YP_007296219.1| - 0.0057 16.8 5.1 0.013 15.7 3.6 1.5 1 0 0 1 1 1 1 Protein of unknown function DUF16 ATG16 PF08614.6 gi|433593478|ref|YP_007296219.1| - 0.013 15.3 10.5 0.025 14.4 7.2 1.4 1 0 0 1 1 1 0 Autophagy protein 16 (ATG16) Cortex-I_coil PF09304.5 gi|433593478|ref|YP_007296219.1| - 0.016 15.1 8.9 0.034 14.1 6.2 1.4 1 0 0 1 1 1 0 Cortexillin I, coiled coil IncA PF04156.9 gi|433593478|ref|YP_007296219.1| - 0.02 14.4 12.1 0.045 13.3 8.4 1.5 1 0 0 1 1 1 0 IncA protein HSBP1 PF06825.7 gi|433593478|ref|YP_007296219.1| - 0.022 14.3 6.1 0.49 10.0 1.7 2.5 2 0 0 2 2 2 0 Heat shock factor binding protein 1 DZR PF12773.2 gi|433593478|ref|YP_007296219.1| - 0.028 14.2 2.8 0.069 12.9 2.0 1.6 1 0 0 1 1 1 0 Double zinc ribbon AAA_13 PF13166.1 gi|433593478|ref|YP_007296219.1| - 0.039 12.4 7.5 0.053 11.9 5.2 1.1 1 0 0 1 1 1 0 AAA domain Cast PF10174.4 gi|433593478|ref|YP_007296219.1| - 0.045 11.7 10.2 0.063 11.3 7.0 1.1 1 0 0 1 1 1 0 RIM-binding protein of the cytomatrix active zone GAS PF13851.1 gi|433593478|ref|YP_007296219.1| - 0.066 12.3 9.5 0.11 11.6 6.6 1.3 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding DDE_Tnp_IS240 PF13610.1 gi|433593478|ref|YP_007296219.1| - 0.074 13.0 3.1 0.19 11.6 0.0 2.5 2 1 0 2 2 2 0 DDE domain Spc7 PF08317.6 gi|433593478|ref|YP_007296219.1| - 0.084 11.5 8.5 0.17 10.5 5.9 1.4 1 0 0 1 1 1 0 Spc7 kinetochore protein Mnd1 PF03962.10 gi|433593478|ref|YP_007296219.1| - 0.087 12.4 9.9 0.26 10.9 6.8 1.7 1 0 0 1 1 1 0 Mnd1 family DUF3552 PF12072.3 gi|433593478|ref|YP_007296219.1| - 0.089 11.9 15.5 0.15 11.2 10.7 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3552) TMF_DNA_bd PF12329.3 gi|433593478|ref|YP_007296219.1| - 0.11 12.3 12.3 0.25 11.1 8.5 1.6 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding TMCO5 PF14992.1 gi|433593478|ref|YP_007296219.1| - 0.14 11.3 8.7 0.23 10.5 6.0 1.3 1 0 0 1 1 1 0 TMCO5 family Fib_alpha PF08702.5 gi|433593478|ref|YP_007296219.1| - 0.14 12.2 5.0 0.31 11.1 3.5 1.5 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family FliD_C PF07195.7 gi|433593478|ref|YP_007296219.1| - 0.17 11.1 4.2 0.31 10.3 2.9 1.4 1 0 0 1 1 1 0 Flagellar hook-associated protein 2 C-terminus Flagellin_C PF00700.16 gi|433593478|ref|YP_007296219.1| - 0.24 11.5 1.8 0.48 10.6 1.3 1.4 1 0 0 1 1 1 0 Bacterial flagellin C-terminal helical region Allexi_40kDa PF05549.6 gi|433593478|ref|YP_007296219.1| - 0.27 10.5 2.8 0.46 9.7 1.9 1.3 1 0 0 1 1 1 0 Allexivirus 40kDa protein Fzo_mitofusin PF04799.8 gi|433593478|ref|YP_007296219.1| - 0.36 10.1 3.5 0.67 9.3 2.5 1.3 1 0 0 1 1 1 0 fzo-like conserved region DUF3584 PF12128.3 gi|433593478|ref|YP_007296219.1| - 0.42 7.8 8.1 0.62 7.3 5.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) DUF812 PF05667.6 gi|433593478|ref|YP_007296219.1| - 0.44 8.9 8.7 0.65 8.4 6.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF812) DASH_Spc34 PF08657.5 gi|433593478|ref|YP_007296219.1| - 0.49 10.0 14.2 2.1 7.9 6.7 2.4 1 1 1 2 2 2 0 DASH complex subunit Spc34 COG2 PF06148.6 gi|433593478|ref|YP_007296219.1| - 0.61 9.9 5.2 1.1 9.0 3.6 1.4 1 0 0 1 1 1 0 COG (conserved oligomeric Golgi) complex component, COG2 Med9 PF07544.8 gi|433593478|ref|YP_007296219.1| - 0.89 9.3 19.2 12 5.7 7.6 3.2 2 1 1 3 3 3 0 RNA polymerase II transcription mediator complex subunit 9 DUF536 PF04394.9 gi|433593478|ref|YP_007296219.1| - 0.93 9.2 15.4 1.6 8.4 10.7 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF536 MIF4G_like_2 PF09090.6 gi|433593478|ref|YP_007296219.1| - 1 8.5 5.5 0.96 8.6 2.9 1.6 2 0 0 2 2 1 0 MIF4G like DUF1465 PF07323.7 gi|433593478|ref|YP_007296219.1| - 1.1 8.8 7.1 2.1 7.8 1.7 2.9 3 0 0 3 3 2 0 Protein of unknown function (DUF1465) DUF1664 PF07889.7 gi|433593478|ref|YP_007296219.1| - 1.8 8.3 4.7 3.8 7.3 3.2 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) V_ATPase_I PF01496.14 gi|433593478|ref|YP_007296219.1| - 2.5 5.8 6.5 3.5 5.3 4.5 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family FemAB PF02388.11 gi|433593478|ref|YP_007296219.1| - 3 6.4 6.9 4.3 5.8 4.8 1.1 1 0 0 1 1 1 0 FemAB family TMPIT PF07851.8 gi|433593478|ref|YP_007296219.1| - 3.8 6.4 4.1 6 5.8 2.9 1.2 1 0 0 1 1 1 0 TMPIT-like protein BTV_NS2 PF04514.7 gi|433593478|ref|YP_007296219.1| - 4 6.2 9.8 6.3 5.5 6.8 1.2 1 0 0 1 1 1 0 Bluetongue virus non-structural protein NS2 DUF3450 PF11932.3 gi|433593478|ref|YP_007296219.1| - 4.6 6.4 12.1 0.89 8.7 5.6 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3450) DUF4337 PF14235.1 gi|433593478|ref|YP_007296219.1| - 5.5 6.8 6.2 9.8 5.9 4.3 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4337) DUF4446 PF14584.1 gi|433593478|ref|YP_007296219.1| - 9 6.1 6.0 19 5.0 4.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF4446) PadR PF03551.9 gi|433593479|ref|YP_007296220.1| - 4.3e-11 42.4 1.1 6.5e-11 41.8 0.7 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_34 PF13601.1 gi|433593479|ref|YP_007296220.1| - 0.091 12.8 0.0 0.14 12.2 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_45 PF14947.1 gi|433593479|ref|YP_007296220.1| - 0.12 12.2 0.1 0.2 11.4 0.1 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix SRP1_TIP1 PF00660.12 gi|433593480|ref|YP_007296221.1| - 0.11 12.2 0.0 0.18 11.6 0.0 1.3 1 0 0 1 1 1 0 Seripauperin and TIP1 family TrmB PF01978.14 gi|433593481|ref|YP_007296222.1| - 1.4e-05 24.7 0.0 3.5e-05 23.4 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB AviRa PF11599.3 gi|433593481|ref|YP_007296222.1| - 0.0008 18.5 0.1 0.00099 18.2 0.1 1.1 1 0 0 1 1 1 1 RRNA methyltransferase AviRa FANCI_S1-cap PF14674.1 gi|433593481|ref|YP_007296222.1| - 0.0025 17.8 0.0 0.0049 16.8 0.0 1.4 1 0 0 1 1 1 1 FANCI solenoid 1 cap HTH_20 PF12840.2 gi|433593481|ref|YP_007296222.1| - 0.028 14.2 0.0 0.081 12.7 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain HeLo PF14479.1 gi|433593481|ref|YP_007296222.1| - 0.031 14.0 0.4 0.04 13.6 0.3 1.2 1 0 0 1 1 1 0 Prion-inhibition and propagation LTD PF00932.14 gi|433593483|ref|YP_007296224.1| - 2.9e-16 59.5 0.5 8.2e-16 58.1 0.3 1.7 1 0 0 1 1 1 1 Lamin Tail Domain Lactamase_B PF00753.22 gi|433593483|ref|YP_007296224.1| - 3.7e-12 46.2 6.4 1.3e-11 44.4 4.4 2.1 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|433593483|ref|YP_007296224.1| - 0.0028 17.2 0.7 0.0068 15.9 0.4 1.7 1 1 1 2 2 2 1 Beta-lactamase superfamily domain DUF3006 PF11213.3 gi|433593484|ref|YP_007296225.1| - 1.6e-14 53.4 2.3 1.8e-14 53.1 1.6 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3006) DNA_gyraseA_C PF03989.8 gi|433593484|ref|YP_007296225.1| - 0.058 12.7 0.1 0.18 11.1 0.0 1.7 2 0 0 2 2 2 0 DNA gyrase C-terminal domain, beta-propeller DUF3252 PF11623.3 gi|433593484|ref|YP_007296225.1| - 0.076 12.4 0.0 0.13 11.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3252) RNA_pol_Rpb5_C PF01191.14 gi|433593484|ref|YP_007296225.1| - 0.12 12.0 0.0 0.16 11.6 0.0 1.2 1 0 0 1 1 1 0 RNA polymerase Rpb5, C-terminal domain DUF1863 PF08937.6 gi|433593485|ref|YP_007296226.1| - 3.2e-29 101.6 1.5 5.1e-29 100.9 1.1 1.3 1 0 0 1 1 1 1 MTH538 TIR-like domain (DUF1863) TIR_2 PF13676.1 gi|433593485|ref|YP_007296226.1| - 6.6e-06 26.2 0.0 1e-05 25.6 0.0 1.4 1 0 0 1 1 1 1 TIR domain HIT PF01230.18 gi|433593487|ref|YP_007296228.1| - 1.8e-23 82.8 0.0 2.2e-23 82.6 0.0 1.1 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.3 gi|433593487|ref|YP_007296228.1| - 5.5e-12 45.9 0.0 8.2e-12 45.3 0.0 1.2 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.10 gi|433593487|ref|YP_007296228.1| - 0.00016 21.3 0.0 0.00021 20.9 0.0 1.3 1 1 0 1 1 1 1 Protein similar to CwfJ C-terminus 1 DUF1863 PF08937.6 gi|433593488|ref|YP_007296229.1| - 5.5e-31 107.3 1.3 1.8e-30 105.6 0.2 2.0 2 0 0 2 2 2 1 MTH538 TIR-like domain (DUF1863) TIR_2 PF13676.1 gi|433593488|ref|YP_007296229.1| - 0.00031 20.8 0.2 0.00072 19.6 0.0 1.7 2 0 0 2 2 2 1 TIR domain PFU PF09070.6 gi|433593488|ref|YP_007296229.1| - 0.005 16.8 1.9 0.012 15.5 0.6 2.1 2 0 0 2 2 2 1 PFU (PLAA family ubiquitin binding) Tox-REase-5 PF15648.1 gi|433593488|ref|YP_007296229.1| - 0.02 15.1 0.3 0.044 14.0 0.2 1.6 1 0 0 1 1 1 0 Restriction endonuclease fold toxin 5 GnsAB PF08178.6 gi|433593488|ref|YP_007296229.1| - 0.045 13.4 0.2 0.12 12.0 0.1 1.7 1 0 0 1 1 1 0 GnsA/GnsB family FlxA PF14282.1 gi|433593489|ref|YP_007296230.1| - 0.0011 18.9 1.9 0.0011 18.9 1.3 1.8 2 0 0 2 2 2 1 FlxA-like protein Atg14 PF10186.4 gi|433593489|ref|YP_007296230.1| - 0.0017 17.3 3.7 0.0017 17.3 2.6 1.6 2 0 0 2 2 2 1 UV radiation resistance protein and autophagy-related subunit 14 SlyX PF04102.7 gi|433593489|ref|YP_007296230.1| - 0.0076 16.6 5.0 0.15 12.4 1.8 3.1 3 0 0 3 3 3 1 SlyX DUF641 PF04859.7 gi|433593489|ref|YP_007296230.1| - 0.011 15.4 1.3 0.025 14.3 0.9 1.6 1 0 0 1 1 1 0 Plant protein of unknown function (DUF641) HSBP1 PF06825.7 gi|433593489|ref|YP_007296230.1| - 0.034 13.7 1.3 0.088 12.3 0.0 2.3 2 1 0 2 2 2 0 Heat shock factor binding protein 1 DUF1281 PF06924.6 gi|433593489|ref|YP_007296230.1| - 0.084 12.2 0.0 0.22 10.9 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1281) TMF_DNA_bd PF12329.3 gi|433593489|ref|YP_007296230.1| - 0.17 11.6 4.7 0.55 10.0 3.1 1.8 1 1 0 1 1 1 0 TATA element modulatory factor 1 DNA binding DUF1664 PF07889.7 gi|433593489|ref|YP_007296230.1| - 0.25 11.1 0.7 0.48 10.2 0.5 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) ATG16 PF08614.6 gi|433593489|ref|YP_007296230.1| - 0.31 10.8 13.2 0.013 15.3 4.6 1.9 2 0 0 2 2 2 0 Autophagy protein 16 (ATG16) CENP-Q PF13094.1 gi|433593489|ref|YP_007296230.1| - 0.75 9.8 10.4 0.07 13.1 3.5 2.0 2 0 0 2 2 2 0 CENP-Q, a CENPA-CAD centromere complex subunit IncA PF04156.9 gi|433593489|ref|YP_007296230.1| - 0.96 9.0 7.3 2 7.9 5.1 1.5 1 0 0 1 1 1 0 IncA protein HAUS6_N PF14661.1 gi|433593489|ref|YP_007296230.1| - 8.1 5.7 13.1 1.5 8.1 4.4 2.0 2 0 0 2 2 2 0 HAUS augmin-like complex subunit 6 N-terminus AAA_10 PF12846.2 gi|433593490|ref|YP_007296231.1| - 6.4e-22 78.3 0.2 1e-21 77.7 0.2 1.3 1 0 0 1 1 1 1 AAA-like domain TrwB_AAD_bind PF10412.4 gi|433593490|ref|YP_007296231.1| - 1.1e-07 30.8 0.0 0.00026 19.7 0.0 2.2 2 0 0 2 2 2 2 Type IV secretion-system coupling protein DNA-binding domain TraG-D_C PF12696.2 gi|433593490|ref|YP_007296231.1| - 1.7e-06 27.9 0.0 4.4e-06 26.5 0.0 1.7 1 0 0 1 1 1 1 TraM recognition site of TraD and TraG T4SS-DNA_transf PF02534.9 gi|433593490|ref|YP_007296231.1| - 0.00027 19.6 0.1 0.0059 15.2 0.1 2.1 2 0 0 2 2 2 1 Type IV secretory system Conjugative DNA transfer FtsK_SpoIIIE PF01580.13 gi|433593490|ref|YP_007296231.1| - 0.00042 19.8 0.1 0.011 15.2 0.0 2.7 3 0 0 3 3 3 1 FtsK/SpoIIIE family PG_binding_1 PF01471.13 gi|433593490|ref|YP_007296231.1| - 0.0022 17.9 0.2 0.039 13.9 0.0 2.8 3 0 0 3 3 3 1 Putative peptidoglycan binding domain Pox_D5 PF03288.11 gi|433593490|ref|YP_007296231.1| - 0.03 14.5 0.0 0.068 13.4 0.0 1.6 1 0 0 1 1 1 0 Poxvirus D5 protein-like NACHT PF05729.7 gi|433593490|ref|YP_007296231.1| - 0.039 13.5 0.0 0.1 12.2 0.0 1.7 1 0 0 1 1 1 0 NACHT domain DUF87 PF01935.12 gi|433593490|ref|YP_007296231.1| - 0.068 12.9 0.0 0.28 10.9 0.0 2.1 1 1 0 1 1 1 0 Domain of unknown function DUF87 DUF91 PF01939.11 gi|433593490|ref|YP_007296231.1| - 0.078 12.1 0.1 0.19 10.8 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function DUF91 Rsa3 PF14615.1 gi|433593491|ref|YP_007296232.1| - 0.012 14.9 0.1 0.03 13.6 0.0 1.7 2 0 0 2 2 2 0 Ribosome-assembly protein 3 DDE_Tnp_1 PF01609.16 gi|433593492|ref|YP_007296233.1| - 1.3e-25 90.1 0.0 1.8e-25 89.7 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_2 PF04693.7 gi|433593492|ref|YP_007296233.1| - 0.0012 17.9 0.1 0.0018 17.3 0.1 1.2 1 0 0 1 1 1 1 Archaeal putative transposase ISC1217 DDE_Tnp_1_2 PF13586.1 gi|433593492|ref|YP_007296233.1| - 0.0082 16.3 0.0 0.023 14.8 0.0 1.7 1 0 0 1 1 1 1 Transposase DDE domain DUF2249 PF10006.4 gi|433593492|ref|YP_007296233.1| - 0.022 14.3 0.2 0.067 12.7 0.1 1.9 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2249) AAA_10 PF12846.2 gi|433593493|ref|YP_007296234.1| - 2.7e-12 46.7 0.5 5.3e-12 45.7 0.0 1.8 2 0 0 2 2 2 1 AAA-like domain Osteopontin PF00865.13 gi|433593494|ref|YP_007296235.1| - 0.051 12.8 1.0 0.072 12.3 0.7 1.1 1 0 0 1 1 1 0 Osteopontin PepSY_2 PF13670.1 gi|433593495|ref|YP_007296236.1| - 0.14 12.0 0.0 0.27 11.1 0.0 1.5 1 0 0 1 1 1 0 Peptidase propeptide and YPEB domain DUF4493 PF14900.1 gi|433593496|ref|YP_007296237.1| - 0.0097 15.5 2.0 0.0097 15.5 0.0 2.0 2 1 1 3 3 3 1 Domain of unknown function (DUF4493) TrbC PF04956.8 gi|433593497|ref|YP_007296238.1| - 0.0023 17.9 2.2 0.0032 17.4 1.5 1.2 1 0 0 1 1 1 1 TrbC/VIRB2 family ResIII PF04851.10 gi|433593499|ref|YP_007296240.1| - 1.1e-23 84.0 0.0 5.4e-23 81.7 0.0 2.2 2 1 0 2 2 2 1 Type III restriction enzyme, res subunit Helicase_C PF00271.26 gi|433593499|ref|YP_007296240.1| - 4.5e-19 68.0 0.3 1e-18 66.9 0.0 1.8 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DEAD PF00270.24 gi|433593499|ref|YP_007296240.1| - 1.6e-10 40.6 0.0 4.3e-10 39.3 0.0 1.7 1 0 0 1 1 1 1 DEAD/DEAH box helicase AAA_22 PF13401.1 gi|433593499|ref|YP_007296240.1| - 0.00014 21.9 0.0 0.0012 19.0 0.0 2.5 1 1 2 3 3 3 1 AAA domain IstB_IS21 PF01695.12 gi|433593499|ref|YP_007296240.1| - 0.006 16.0 0.0 0.17 11.2 0.0 2.8 3 0 0 3 3 3 1 IstB-like ATP binding protein PhoH PF02562.11 gi|433593499|ref|YP_007296240.1| - 0.076 12.2 0.0 0.12 11.5 0.0 1.3 1 0 0 1 1 1 0 PhoH-like protein Helicase_C_2 PF13307.1 gi|433593499|ref|YP_007296240.1| - 0.079 12.9 0.1 0.88 9.5 0.0 2.7 3 0 0 3 3 3 0 Helicase C-terminal domain Zot PF05707.7 gi|433593499|ref|YP_007296240.1| - 0.091 12.2 0.0 0.17 11.3 0.0 1.4 1 0 0 1 1 1 0 Zonular occludens toxin (Zot) DivIVA PF05103.8 gi|433593499|ref|YP_007296240.1| - 0.14 12.2 3.4 0.083 12.9 0.6 1.8 2 0 0 2 2 2 0 DivIVA protein Calci_bind_CcbP PF11535.3 gi|433593500|ref|YP_007296241.1| - 2.2e-36 124.3 0.3 2.5e-36 124.1 0.2 1.0 1 0 0 1 1 1 1 Calcium binding DDE_Tnp_1 PF01609.16 gi|433593502|ref|YP_007296243.1| - 1.5e-14 54.0 0.0 2.1e-14 53.5 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.6 gi|433593502|ref|YP_007296243.1| - 0.0027 17.5 0.0 0.0054 16.5 0.0 1.5 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1 PF01609.16 gi|433593506|ref|YP_007296247.1| - 1.3e-25 90.1 0.0 1.8e-25 89.7 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_2 PF04693.7 gi|433593506|ref|YP_007296247.1| - 0.0012 17.9 0.1 0.0018 17.3 0.1 1.2 1 0 0 1 1 1 1 Archaeal putative transposase ISC1217 DDE_Tnp_1_2 PF13586.1 gi|433593506|ref|YP_007296247.1| - 0.0082 16.3 0.0 0.023 14.8 0.0 1.7 1 0 0 1 1 1 1 Transposase DDE domain DUF2249 PF10006.4 gi|433593506|ref|YP_007296247.1| - 0.022 14.3 0.2 0.067 12.7 0.1 1.9 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2249) PRiA4_ORF3 PF07929.6 gi|433593507|ref|YP_007296248.1| - 4.3e-13 49.0 0.2 1.1e-11 44.4 0.0 2.1 2 0 0 2 2 2 1 Plasmid pRiA4b ORF-3-like protein DUF3499 PF12005.3 gi|433593507|ref|YP_007296248.1| - 0.027 14.6 0.1 0.044 13.9 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3499) DDE_Tnp_1 PF01609.16 gi|433593508|ref|YP_007296249.1| - 1.5e-14 54.0 0.0 2.1e-14 53.5 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.6 gi|433593508|ref|YP_007296249.1| - 0.0027 17.5 0.0 0.0054 16.5 0.0 1.5 1 0 0 1 1 1 1 Transposase domain (DUF772) SF3a60_bindingd PF12108.3 gi|433593509|ref|YP_007296250.1| - 0.12 11.9 0.2 0.21 11.1 0.2 1.4 1 0 0 1 1 1 0 Splicing factor SF3a60 binding domain DDE_Tnp_IS66 PF03050.9 gi|433593511|ref|YP_007296252.1| - 9.1e-51 172.6 0.2 9.1e-51 172.6 0.2 1.7 2 0 0 2 2 2 1 Transposase IS66 family Tropomyosin_1 PF12718.2 gi|433593511|ref|YP_007296252.1| - 3.5e-05 23.6 8.1 8.1e-05 22.5 5.6 1.6 1 0 0 1 1 1 1 Tropomyosin like ATG16 PF08614.6 gi|433593511|ref|YP_007296252.1| - 0.00045 20.0 8.2 0.00089 19.1 5.7 1.4 1 0 0 1 1 1 1 Autophagy protein 16 (ATG16) DDE_Tnp_IS240 PF13610.1 gi|433593511|ref|YP_007296252.1| - 0.0011 19.0 0.8 0.0047 16.8 0.0 2.2 2 1 0 2 2 2 1 DDE domain ERM PF00769.14 gi|433593511|ref|YP_007296252.1| - 0.0014 18.1 4.1 0.0025 17.3 2.9 1.4 1 0 0 1 1 1 1 Ezrin/radixin/moesin family Striatin PF08232.7 gi|433593511|ref|YP_007296252.1| - 0.0063 16.8 5.0 0.014 15.7 3.5 1.5 1 0 0 1 1 1 1 Striatin family SlyX PF04102.7 gi|433593511|ref|YP_007296252.1| - 0.0077 16.5 6.3 0.025 14.9 4.3 1.8 1 0 0 1 1 1 1 SlyX Med4 PF10018.4 gi|433593511|ref|YP_007296252.1| - 0.013 14.9 6.1 0.025 13.9 4.2 1.4 1 0 0 1 1 1 0 Vitamin-D-receptor interacting Mediator subunit 4 TMF_DNA_bd PF12329.3 gi|433593511|ref|YP_007296252.1| - 0.018 14.7 13.4 0.034 13.9 9.3 1.5 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding IncA PF04156.9 gi|433593511|ref|YP_007296252.1| - 0.021 14.4 10.1 0.053 13.1 7.0 1.6 1 0 0 1 1 1 0 IncA protein AAA_13 PF13166.1 gi|433593511|ref|YP_007296252.1| - 0.024 13.1 2.3 0.037 12.4 1.6 1.2 1 0 0 1 1 1 0 AAA domain HOOK PF05622.7 gi|433593511|ref|YP_007296252.1| - 0.03 12.1 7.1 0.049 11.4 4.9 1.2 1 0 0 1 1 1 0 HOOK protein DUF4407 PF14362.1 gi|433593511|ref|YP_007296252.1| - 0.038 12.9 1.7 0.068 12.1 1.2 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) TBPIP PF07106.8 gi|433593511|ref|YP_007296252.1| - 0.039 13.4 4.5 0.093 12.2 3.1 1.6 1 0 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) DUF3552 PF12072.3 gi|433593511|ref|YP_007296252.1| - 0.044 12.9 9.0 0.085 12.0 6.3 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3552) Atg14 PF10186.4 gi|433593511|ref|YP_007296252.1| - 0.05 12.5 5.4 0.11 11.4 3.8 1.5 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 Fib_alpha PF08702.5 gi|433593511|ref|YP_007296252.1| - 0.072 13.2 3.1 0.17 12.0 2.1 1.6 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family DUF641 PF04859.7 gi|433593511|ref|YP_007296252.1| - 0.081 12.6 5.8 0.16 11.6 4.0 1.5 1 0 0 1 1 1 0 Plant protein of unknown function (DUF641) bZIP_1 PF00170.16 gi|433593511|ref|YP_007296252.1| - 0.1 12.5 9.9 0.091 12.7 5.0 2.2 1 1 1 2 2 2 0 bZIP transcription factor DUF724 PF05266.9 gi|433593511|ref|YP_007296252.1| - 0.12 12.0 5.2 0.21 11.1 3.6 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF724) Fmp27_WPPW PF10359.4 gi|433593511|ref|YP_007296252.1| - 0.12 10.7 4.0 0.18 10.1 2.8 1.1 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain PspA_IM30 PF04012.7 gi|433593511|ref|YP_007296252.1| - 0.16 11.2 8.8 0.43 9.8 6.1 1.6 1 0 0 1 1 1 0 PspA/IM30 family HemX PF04375.9 gi|433593511|ref|YP_007296252.1| - 0.19 10.2 3.0 0.35 9.4 2.1 1.3 1 0 0 1 1 1 0 HemX DUF972 PF06156.8 gi|433593511|ref|YP_007296252.1| - 0.21 11.9 7.0 0.22 11.8 3.7 1.9 2 0 0 2 2 1 0 Protein of unknown function (DUF972) DUF3186 PF11382.3 gi|433593511|ref|YP_007296252.1| - 0.25 10.4 3.2 0.42 9.7 2.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3186) Spc7 PF08317.6 gi|433593511|ref|YP_007296252.1| - 0.37 9.4 6.4 0.68 8.5 4.4 1.3 1 0 0 1 1 1 0 Spc7 kinetochore protein DUF3450 PF11932.3 gi|433593511|ref|YP_007296252.1| - 0.47 9.6 5.8 1.4 8.0 4.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3450) APG6 PF04111.7 gi|433593511|ref|YP_007296252.1| - 0.51 9.3 7.0 0.94 8.4 4.9 1.3 1 0 0 1 1 1 0 Autophagy protein Apg6 zf-IS66 PF13005.2 gi|433593511|ref|YP_007296252.1| - 0.54 10.2 14.3 0.21 11.6 6.7 2.6 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 TMF_TATA_bd PF12325.3 gi|433593511|ref|YP_007296252.1| - 0.56 9.9 11.6 1.5 8.5 8.0 1.6 1 0 0 1 1 1 0 TATA element modulatory factor 1 TATA binding FemAB PF02388.11 gi|433593511|ref|YP_007296252.1| - 0.64 8.6 5.4 0.94 8.0 3.7 1.1 1 0 0 1 1 1 0 FemAB family V_ATPase_I PF01496.14 gi|433593511|ref|YP_007296252.1| - 0.69 7.6 3.8 0.97 7.2 2.7 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family Spc24 PF08286.6 gi|433593511|ref|YP_007296252.1| - 1.2 8.8 6.4 2.6 7.7 4.4 1.5 1 0 0 1 1 1 0 Spc24 subunit of Ndc80 CCDC-167 PF15188.1 gi|433593511|ref|YP_007296252.1| - 1.5 8.8 10.6 0.63 10.0 1.9 2.7 1 1 1 2 2 2 0 Coiled-coil domain-containing protein 167 XhlA PF10779.4 gi|433593511|ref|YP_007296252.1| - 3.2 7.7 9.6 9 6.2 6.6 1.7 1 0 0 1 1 1 0 Haemolysin XhlA DDE_Tnp_IS66 PF03050.9 gi|433593513|ref|YP_007296254.1| - 2.8e-52 177.5 0.0 2.8e-52 177.5 0.0 2.1 2 0 0 2 2 2 1 Transposase IS66 family SlyX PF04102.7 gi|433593513|ref|YP_007296254.1| - 8.4e-09 35.6 7.0 2e-08 34.4 4.8 1.7 1 0 0 1 1 1 1 SlyX zf-IS66 PF13005.2 gi|433593513|ref|YP_007296254.1| - 0.00066 19.5 5.8 0.00066 19.5 4.0 2.5 2 0 0 2 2 1 1 zinc-finger binding domain of transposase IS66 Atg14 PF10186.4 gi|433593513|ref|YP_007296254.1| - 0.0012 17.9 8.2 0.0019 17.1 5.7 1.3 1 0 0 1 1 1 1 UV radiation resistance protein and autophagy-related subunit 14 Fmp27_WPPW PF10359.4 gi|433593513|ref|YP_007296254.1| - 0.0026 16.2 7.0 0.0037 15.7 4.8 1.1 1 0 0 1 1 1 1 RNA pol II promoter Fmp27 protein domain MscS_porin PF12795.2 gi|433593513|ref|YP_007296254.1| - 0.0057 16.0 8.0 0.0091 15.3 5.6 1.3 1 0 0 1 1 1 1 Mechanosensitive ion channel porin domain DUF16 PF01519.11 gi|433593513|ref|YP_007296254.1| - 0.0057 16.8 5.1 0.013 15.7 3.6 1.5 1 0 0 1 1 1 1 Protein of unknown function DUF16 ATG16 PF08614.6 gi|433593513|ref|YP_007296254.1| - 0.013 15.3 10.5 0.025 14.4 7.2 1.4 1 0 0 1 1 1 0 Autophagy protein 16 (ATG16) Cortex-I_coil PF09304.5 gi|433593513|ref|YP_007296254.1| - 0.016 15.1 8.9 0.034 14.1 6.2 1.4 1 0 0 1 1 1 0 Cortexillin I, coiled coil IncA PF04156.9 gi|433593513|ref|YP_007296254.1| - 0.02 14.4 12.1 0.045 13.3 8.4 1.5 1 0 0 1 1 1 0 IncA protein HSBP1 PF06825.7 gi|433593513|ref|YP_007296254.1| - 0.022 14.3 6.1 0.49 10.0 1.7 2.5 2 0 0 2 2 2 0 Heat shock factor binding protein 1 DZR PF12773.2 gi|433593513|ref|YP_007296254.1| - 0.028 14.2 2.8 0.069 12.9 2.0 1.6 1 0 0 1 1 1 0 Double zinc ribbon AAA_13 PF13166.1 gi|433593513|ref|YP_007296254.1| - 0.039 12.4 7.5 0.053 11.9 5.2 1.1 1 0 0 1 1 1 0 AAA domain Cast PF10174.4 gi|433593513|ref|YP_007296254.1| - 0.045 11.7 10.2 0.063 11.3 7.0 1.1 1 0 0 1 1 1 0 RIM-binding protein of the cytomatrix active zone GAS PF13851.1 gi|433593513|ref|YP_007296254.1| - 0.066 12.3 9.5 0.11 11.6 6.6 1.3 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding DDE_Tnp_IS240 PF13610.1 gi|433593513|ref|YP_007296254.1| - 0.074 13.0 3.1 0.19 11.6 0.0 2.5 2 1 0 2 2 2 0 DDE domain Spc7 PF08317.6 gi|433593513|ref|YP_007296254.1| - 0.084 11.5 8.5 0.17 10.5 5.9 1.4 1 0 0 1 1 1 0 Spc7 kinetochore protein Mnd1 PF03962.10 gi|433593513|ref|YP_007296254.1| - 0.087 12.4 9.9 0.26 10.9 6.8 1.7 1 0 0 1 1 1 0 Mnd1 family DUF3552 PF12072.3 gi|433593513|ref|YP_007296254.1| - 0.089 11.9 15.5 0.15 11.2 10.7 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3552) TMF_DNA_bd PF12329.3 gi|433593513|ref|YP_007296254.1| - 0.11 12.3 12.3 0.25 11.1 8.5 1.6 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding TMCO5 PF14992.1 gi|433593513|ref|YP_007296254.1| - 0.14 11.3 8.7 0.23 10.5 6.0 1.3 1 0 0 1 1 1 0 TMCO5 family Fib_alpha PF08702.5 gi|433593513|ref|YP_007296254.1| - 0.14 12.2 5.0 0.31 11.1 3.5 1.5 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family FliD_C PF07195.7 gi|433593513|ref|YP_007296254.1| - 0.17 11.1 4.2 0.31 10.3 2.9 1.4 1 0 0 1 1 1 0 Flagellar hook-associated protein 2 C-terminus Flagellin_C PF00700.16 gi|433593513|ref|YP_007296254.1| - 0.24 11.5 1.8 0.48 10.6 1.3 1.4 1 0 0 1 1 1 0 Bacterial flagellin C-terminal helical region Allexi_40kDa PF05549.6 gi|433593513|ref|YP_007296254.1| - 0.27 10.5 2.8 0.46 9.7 1.9 1.3 1 0 0 1 1 1 0 Allexivirus 40kDa protein Fzo_mitofusin PF04799.8 gi|433593513|ref|YP_007296254.1| - 0.36 10.1 3.5 0.67 9.3 2.5 1.3 1 0 0 1 1 1 0 fzo-like conserved region DUF3584 PF12128.3 gi|433593513|ref|YP_007296254.1| - 0.42 7.8 8.1 0.62 7.3 5.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) DUF812 PF05667.6 gi|433593513|ref|YP_007296254.1| - 0.44 8.9 8.7 0.65 8.4 6.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF812) DASH_Spc34 PF08657.5 gi|433593513|ref|YP_007296254.1| - 0.49 10.0 14.2 2.1 7.9 6.7 2.4 1 1 1 2 2 2 0 DASH complex subunit Spc34 COG2 PF06148.6 gi|433593513|ref|YP_007296254.1| - 0.61 9.9 5.2 1.1 9.0 3.6 1.4 1 0 0 1 1 1 0 COG (conserved oligomeric Golgi) complex component, COG2 Med9 PF07544.8 gi|433593513|ref|YP_007296254.1| - 0.89 9.3 19.2 12 5.7 7.6 3.2 2 1 1 3 3 3 0 RNA polymerase II transcription mediator complex subunit 9 DUF536 PF04394.9 gi|433593513|ref|YP_007296254.1| - 0.93 9.2 15.4 1.6 8.4 10.7 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF536 MIF4G_like_2 PF09090.6 gi|433593513|ref|YP_007296254.1| - 1 8.5 5.5 0.96 8.6 2.9 1.6 2 0 0 2 2 1 0 MIF4G like DUF1465 PF07323.7 gi|433593513|ref|YP_007296254.1| - 1.1 8.8 7.1 2.1 7.8 1.7 2.9 3 0 0 3 3 2 0 Protein of unknown function (DUF1465) DUF1664 PF07889.7 gi|433593513|ref|YP_007296254.1| - 1.8 8.3 4.7 3.8 7.3 3.2 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) V_ATPase_I PF01496.14 gi|433593513|ref|YP_007296254.1| - 2.5 5.8 6.5 3.5 5.3 4.5 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family FemAB PF02388.11 gi|433593513|ref|YP_007296254.1| - 3 6.4 6.9 4.3 5.8 4.8 1.1 1 0 0 1 1 1 0 FemAB family TMPIT PF07851.8 gi|433593513|ref|YP_007296254.1| - 3.8 6.4 4.1 6 5.8 2.9 1.2 1 0 0 1 1 1 0 TMPIT-like protein BTV_NS2 PF04514.7 gi|433593513|ref|YP_007296254.1| - 4 6.2 9.8 6.3 5.5 6.8 1.2 1 0 0 1 1 1 0 Bluetongue virus non-structural protein NS2 DUF3450 PF11932.3 gi|433593513|ref|YP_007296254.1| - 4.6 6.4 12.1 0.89 8.7 5.6 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3450) DUF4337 PF14235.1 gi|433593513|ref|YP_007296254.1| - 5.5 6.8 6.2 9.8 5.9 4.3 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4337) DUF4446 PF14584.1 gi|433593513|ref|YP_007296254.1| - 9 6.1 6.0 19 5.0 4.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF4446) DDE_Tnp_IS66 PF03050.9 gi|433593514|ref|YP_007296255.1| - 2.8e-52 177.5 0.0 2.8e-52 177.5 0.0 2.1 2 0 0 2 2 2 1 Transposase IS66 family SlyX PF04102.7 gi|433593514|ref|YP_007296255.1| - 8.4e-09 35.6 7.0 2e-08 34.4 4.8 1.7 1 0 0 1 1 1 1 SlyX zf-IS66 PF13005.2 gi|433593514|ref|YP_007296255.1| - 0.00066 19.5 5.8 0.00066 19.5 4.0 2.5 2 0 0 2 2 1 1 zinc-finger binding domain of transposase IS66 Atg14 PF10186.4 gi|433593514|ref|YP_007296255.1| - 0.0012 17.9 8.2 0.0019 17.1 5.7 1.3 1 0 0 1 1 1 1 UV radiation resistance protein and autophagy-related subunit 14 Fmp27_WPPW PF10359.4 gi|433593514|ref|YP_007296255.1| - 0.0026 16.2 7.0 0.0037 15.7 4.8 1.1 1 0 0 1 1 1 1 RNA pol II promoter Fmp27 protein domain MscS_porin PF12795.2 gi|433593514|ref|YP_007296255.1| - 0.0057 16.0 8.0 0.0091 15.3 5.6 1.3 1 0 0 1 1 1 1 Mechanosensitive ion channel porin domain DUF16 PF01519.11 gi|433593514|ref|YP_007296255.1| - 0.0057 16.8 5.1 0.013 15.7 3.6 1.5 1 0 0 1 1 1 1 Protein of unknown function DUF16 ATG16 PF08614.6 gi|433593514|ref|YP_007296255.1| - 0.013 15.3 10.5 0.025 14.4 7.2 1.4 1 0 0 1 1 1 0 Autophagy protein 16 (ATG16) Cortex-I_coil PF09304.5 gi|433593514|ref|YP_007296255.1| - 0.016 15.1 8.9 0.034 14.1 6.2 1.4 1 0 0 1 1 1 0 Cortexillin I, coiled coil IncA PF04156.9 gi|433593514|ref|YP_007296255.1| - 0.02 14.4 12.1 0.045 13.3 8.4 1.5 1 0 0 1 1 1 0 IncA protein HSBP1 PF06825.7 gi|433593514|ref|YP_007296255.1| - 0.022 14.3 6.1 0.49 10.0 1.7 2.5 2 0 0 2 2 2 0 Heat shock factor binding protein 1 DZR PF12773.2 gi|433593514|ref|YP_007296255.1| - 0.028 14.2 2.8 0.069 12.9 2.0 1.6 1 0 0 1 1 1 0 Double zinc ribbon AAA_13 PF13166.1 gi|433593514|ref|YP_007296255.1| - 0.039 12.4 7.5 0.053 11.9 5.2 1.1 1 0 0 1 1 1 0 AAA domain Cast PF10174.4 gi|433593514|ref|YP_007296255.1| - 0.045 11.7 10.2 0.063 11.3 7.0 1.1 1 0 0 1 1 1 0 RIM-binding protein of the cytomatrix active zone GAS PF13851.1 gi|433593514|ref|YP_007296255.1| - 0.066 12.3 9.5 0.11 11.6 6.6 1.3 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding DDE_Tnp_IS240 PF13610.1 gi|433593514|ref|YP_007296255.1| - 0.074 13.0 3.1 0.19 11.6 0.0 2.5 2 1 0 2 2 2 0 DDE domain Spc7 PF08317.6 gi|433593514|ref|YP_007296255.1| - 0.084 11.5 8.5 0.17 10.5 5.9 1.4 1 0 0 1 1 1 0 Spc7 kinetochore protein Mnd1 PF03962.10 gi|433593514|ref|YP_007296255.1| - 0.087 12.4 9.9 0.26 10.9 6.8 1.7 1 0 0 1 1 1 0 Mnd1 family DUF3552 PF12072.3 gi|433593514|ref|YP_007296255.1| - 0.089 11.9 15.5 0.15 11.2 10.7 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3552) TMF_DNA_bd PF12329.3 gi|433593514|ref|YP_007296255.1| - 0.11 12.3 12.3 0.25 11.1 8.5 1.6 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding TMCO5 PF14992.1 gi|433593514|ref|YP_007296255.1| - 0.14 11.3 8.7 0.23 10.5 6.0 1.3 1 0 0 1 1 1 0 TMCO5 family Fib_alpha PF08702.5 gi|433593514|ref|YP_007296255.1| - 0.14 12.2 5.0 0.31 11.1 3.5 1.5 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family FliD_C PF07195.7 gi|433593514|ref|YP_007296255.1| - 0.17 11.1 4.2 0.31 10.3 2.9 1.4 1 0 0 1 1 1 0 Flagellar hook-associated protein 2 C-terminus Flagellin_C PF00700.16 gi|433593514|ref|YP_007296255.1| - 0.24 11.5 1.8 0.48 10.6 1.3 1.4 1 0 0 1 1 1 0 Bacterial flagellin C-terminal helical region Allexi_40kDa PF05549.6 gi|433593514|ref|YP_007296255.1| - 0.27 10.5 2.8 0.46 9.7 1.9 1.3 1 0 0 1 1 1 0 Allexivirus 40kDa protein Fzo_mitofusin PF04799.8 gi|433593514|ref|YP_007296255.1| - 0.36 10.1 3.5 0.67 9.3 2.5 1.3 1 0 0 1 1 1 0 fzo-like conserved region DUF3584 PF12128.3 gi|433593514|ref|YP_007296255.1| - 0.42 7.8 8.1 0.62 7.3 5.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) DUF812 PF05667.6 gi|433593514|ref|YP_007296255.1| - 0.44 8.9 8.7 0.65 8.4 6.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF812) DASH_Spc34 PF08657.5 gi|433593514|ref|YP_007296255.1| - 0.49 10.0 14.2 2.1 7.9 6.7 2.4 1 1 1 2 2 2 0 DASH complex subunit Spc34 COG2 PF06148.6 gi|433593514|ref|YP_007296255.1| - 0.61 9.9 5.2 1.1 9.0 3.6 1.4 1 0 0 1 1 1 0 COG (conserved oligomeric Golgi) complex component, COG2 Med9 PF07544.8 gi|433593514|ref|YP_007296255.1| - 0.89 9.3 19.2 12 5.7 7.6 3.2 2 1 1 3 3 3 0 RNA polymerase II transcription mediator complex subunit 9 DUF536 PF04394.9 gi|433593514|ref|YP_007296255.1| - 0.93 9.2 15.4 1.6 8.4 10.7 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF536 MIF4G_like_2 PF09090.6 gi|433593514|ref|YP_007296255.1| - 1 8.5 5.5 0.96 8.6 2.9 1.6 2 0 0 2 2 1 0 MIF4G like DUF1465 PF07323.7 gi|433593514|ref|YP_007296255.1| - 1.1 8.8 7.1 2.1 7.8 1.7 2.9 3 0 0 3 3 2 0 Protein of unknown function (DUF1465) DUF1664 PF07889.7 gi|433593514|ref|YP_007296255.1| - 1.8 8.3 4.7 3.8 7.3 3.2 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) V_ATPase_I PF01496.14 gi|433593514|ref|YP_007296255.1| - 2.5 5.8 6.5 3.5 5.3 4.5 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family FemAB PF02388.11 gi|433593514|ref|YP_007296255.1| - 3 6.4 6.9 4.3 5.8 4.8 1.1 1 0 0 1 1 1 0 FemAB family TMPIT PF07851.8 gi|433593514|ref|YP_007296255.1| - 3.8 6.4 4.1 6 5.8 2.9 1.2 1 0 0 1 1 1 0 TMPIT-like protein BTV_NS2 PF04514.7 gi|433593514|ref|YP_007296255.1| - 4 6.2 9.8 6.3 5.5 6.8 1.2 1 0 0 1 1 1 0 Bluetongue virus non-structural protein NS2 DUF3450 PF11932.3 gi|433593514|ref|YP_007296255.1| - 4.6 6.4 12.1 0.89 8.7 5.6 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3450) DUF4337 PF14235.1 gi|433593514|ref|YP_007296255.1| - 5.5 6.8 6.2 9.8 5.9 4.3 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4337) DUF4446 PF14584.1 gi|433593514|ref|YP_007296255.1| - 9 6.1 6.0 19 5.0 4.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF4446) Peptidase_M48 PF01435.13 gi|433593516|ref|YP_007296257.1| - 5e-19 68.7 0.0 1e-18 67.7 0.0 1.5 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.6 gi|433593516|ref|YP_007296257.1| - 0.0086 15.0 3.7 0.021 13.8 0.0 2.5 3 0 0 3 3 3 1 BlaR1 peptidase M56 SprT-like PF10263.4 gi|433593516|ref|YP_007296257.1| - 0.067 12.8 0.0 0.11 12.2 0.0 1.2 1 0 0 1 1 1 0 SprT-like family DUF1275 PF06912.6 gi|433593517|ref|YP_007296258.1| - 0.02 14.0 2.6 0.023 13.8 1.8 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1275) DUF998 PF06197.8 gi|433593517|ref|YP_007296258.1| - 1.6 7.9 9.5 5.7 6.1 6.6 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF998) DUF21 PF01595.15 gi|433593518|ref|YP_007296259.1| - 0.032 13.5 3.5 0.032 13.5 2.4 1.0 1 0 0 1 1 1 0 Domain of unknown function DUF21 DUF2207 PF09972.4 gi|433593518|ref|YP_007296259.1| - 3.4 6.1 5.0 3.3 6.1 3.5 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) DDE_Tnp_IS66 PF03050.9 gi|433593519|ref|YP_007296260.1| - 2.8e-52 177.5 0.0 2.8e-52 177.5 0.0 2.1 2 0 0 2 2 2 1 Transposase IS66 family SlyX PF04102.7 gi|433593519|ref|YP_007296260.1| - 8.4e-09 35.6 7.0 2e-08 34.4 4.8 1.7 1 0 0 1 1 1 1 SlyX zf-IS66 PF13005.2 gi|433593519|ref|YP_007296260.1| - 0.00066 19.5 5.8 0.00066 19.5 4.0 2.5 2 0 0 2 2 1 1 zinc-finger binding domain of transposase IS66 Atg14 PF10186.4 gi|433593519|ref|YP_007296260.1| - 0.0012 17.9 8.2 0.0019 17.1 5.7 1.3 1 0 0 1 1 1 1 UV radiation resistance protein and autophagy-related subunit 14 Fmp27_WPPW PF10359.4 gi|433593519|ref|YP_007296260.1| - 0.0026 16.2 7.0 0.0037 15.7 4.8 1.1 1 0 0 1 1 1 1 RNA pol II promoter Fmp27 protein domain MscS_porin PF12795.2 gi|433593519|ref|YP_007296260.1| - 0.0057 16.0 8.0 0.0091 15.3 5.6 1.3 1 0 0 1 1 1 1 Mechanosensitive ion channel porin domain DUF16 PF01519.11 gi|433593519|ref|YP_007296260.1| - 0.0057 16.8 5.1 0.013 15.7 3.6 1.5 1 0 0 1 1 1 1 Protein of unknown function DUF16 ATG16 PF08614.6 gi|433593519|ref|YP_007296260.1| - 0.013 15.3 10.5 0.025 14.4 7.2 1.4 1 0 0 1 1 1 0 Autophagy protein 16 (ATG16) Cortex-I_coil PF09304.5 gi|433593519|ref|YP_007296260.1| - 0.016 15.1 8.9 0.034 14.1 6.2 1.4 1 0 0 1 1 1 0 Cortexillin I, coiled coil IncA PF04156.9 gi|433593519|ref|YP_007296260.1| - 0.02 14.4 12.1 0.045 13.3 8.4 1.5 1 0 0 1 1 1 0 IncA protein HSBP1 PF06825.7 gi|433593519|ref|YP_007296260.1| - 0.022 14.3 6.1 0.49 10.0 1.7 2.5 2 0 0 2 2 2 0 Heat shock factor binding protein 1 DZR PF12773.2 gi|433593519|ref|YP_007296260.1| - 0.028 14.2 2.8 0.069 12.9 2.0 1.6 1 0 0 1 1 1 0 Double zinc ribbon AAA_13 PF13166.1 gi|433593519|ref|YP_007296260.1| - 0.039 12.4 7.5 0.053 11.9 5.2 1.1 1 0 0 1 1 1 0 AAA domain Cast PF10174.4 gi|433593519|ref|YP_007296260.1| - 0.045 11.7 10.2 0.063 11.3 7.0 1.1 1 0 0 1 1 1 0 RIM-binding protein of the cytomatrix active zone GAS PF13851.1 gi|433593519|ref|YP_007296260.1| - 0.066 12.3 9.5 0.11 11.6 6.6 1.3 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding DDE_Tnp_IS240 PF13610.1 gi|433593519|ref|YP_007296260.1| - 0.074 13.0 3.1 0.19 11.6 0.0 2.5 2 1 0 2 2 2 0 DDE domain Spc7 PF08317.6 gi|433593519|ref|YP_007296260.1| - 0.084 11.5 8.5 0.17 10.5 5.9 1.4 1 0 0 1 1 1 0 Spc7 kinetochore protein Mnd1 PF03962.10 gi|433593519|ref|YP_007296260.1| - 0.087 12.4 9.9 0.26 10.9 6.8 1.7 1 0 0 1 1 1 0 Mnd1 family DUF3552 PF12072.3 gi|433593519|ref|YP_007296260.1| - 0.089 11.9 15.5 0.15 11.2 10.7 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3552) TMF_DNA_bd PF12329.3 gi|433593519|ref|YP_007296260.1| - 0.11 12.3 12.3 0.25 11.1 8.5 1.6 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding TMCO5 PF14992.1 gi|433593519|ref|YP_007296260.1| - 0.14 11.3 8.7 0.23 10.5 6.0 1.3 1 0 0 1 1 1 0 TMCO5 family Fib_alpha PF08702.5 gi|433593519|ref|YP_007296260.1| - 0.14 12.2 5.0 0.31 11.1 3.5 1.5 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family FliD_C PF07195.7 gi|433593519|ref|YP_007296260.1| - 0.17 11.1 4.2 0.31 10.3 2.9 1.4 1 0 0 1 1 1 0 Flagellar hook-associated protein 2 C-terminus Flagellin_C PF00700.16 gi|433593519|ref|YP_007296260.1| - 0.24 11.5 1.8 0.48 10.6 1.3 1.4 1 0 0 1 1 1 0 Bacterial flagellin C-terminal helical region Allexi_40kDa PF05549.6 gi|433593519|ref|YP_007296260.1| - 0.27 10.5 2.8 0.46 9.7 1.9 1.3 1 0 0 1 1 1 0 Allexivirus 40kDa protein Fzo_mitofusin PF04799.8 gi|433593519|ref|YP_007296260.1| - 0.36 10.1 3.5 0.67 9.3 2.5 1.3 1 0 0 1 1 1 0 fzo-like conserved region DUF3584 PF12128.3 gi|433593519|ref|YP_007296260.1| - 0.42 7.8 8.1 0.62 7.3 5.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) DUF812 PF05667.6 gi|433593519|ref|YP_007296260.1| - 0.44 8.9 8.7 0.65 8.4 6.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF812) DASH_Spc34 PF08657.5 gi|433593519|ref|YP_007296260.1| - 0.49 10.0 14.2 2.1 7.9 6.7 2.4 1 1 1 2 2 2 0 DASH complex subunit Spc34 COG2 PF06148.6 gi|433593519|ref|YP_007296260.1| - 0.61 9.9 5.2 1.1 9.0 3.6 1.4 1 0 0 1 1 1 0 COG (conserved oligomeric Golgi) complex component, COG2 Med9 PF07544.8 gi|433593519|ref|YP_007296260.1| - 0.89 9.3 19.2 12 5.7 7.6 3.2 2 1 1 3 3 3 0 RNA polymerase II transcription mediator complex subunit 9 DUF536 PF04394.9 gi|433593519|ref|YP_007296260.1| - 0.93 9.2 15.4 1.6 8.4 10.7 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF536 MIF4G_like_2 PF09090.6 gi|433593519|ref|YP_007296260.1| - 1 8.5 5.5 0.96 8.6 2.9 1.6 2 0 0 2 2 1 0 MIF4G like DUF1465 PF07323.7 gi|433593519|ref|YP_007296260.1| - 1.1 8.8 7.1 2.1 7.8 1.7 2.9 3 0 0 3 3 2 0 Protein of unknown function (DUF1465) DUF1664 PF07889.7 gi|433593519|ref|YP_007296260.1| - 1.8 8.3 4.7 3.8 7.3 3.2 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) V_ATPase_I PF01496.14 gi|433593519|ref|YP_007296260.1| - 2.5 5.8 6.5 3.5 5.3 4.5 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family FemAB PF02388.11 gi|433593519|ref|YP_007296260.1| - 3 6.4 6.9 4.3 5.8 4.8 1.1 1 0 0 1 1 1 0 FemAB family TMPIT PF07851.8 gi|433593519|ref|YP_007296260.1| - 3.8 6.4 4.1 6 5.8 2.9 1.2 1 0 0 1 1 1 0 TMPIT-like protein BTV_NS2 PF04514.7 gi|433593519|ref|YP_007296260.1| - 4 6.2 9.8 6.3 5.5 6.8 1.2 1 0 0 1 1 1 0 Bluetongue virus non-structural protein NS2 DUF3450 PF11932.3 gi|433593519|ref|YP_007296260.1| - 4.6 6.4 12.1 0.89 8.7 5.6 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3450) DUF4337 PF14235.1 gi|433593519|ref|YP_007296260.1| - 5.5 6.8 6.2 9.8 5.9 4.3 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4337) DUF4446 PF14584.1 gi|433593519|ref|YP_007296260.1| - 9 6.1 6.0 19 5.0 4.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF4446) PQQ_2 PF13360.1 gi|433593520|ref|YP_007296261.1| - 3.4e-30 105.2 9.3 5.1e-21 75.2 1.4 2.9 1 1 1 2 2 2 2 PQQ-like domain PQQ_3 PF13570.1 gi|433593520|ref|YP_007296261.1| - 1.7e-17 63.0 25.6 0.0017 18.5 0.3 8.4 8 0 0 8 8 8 6 PQQ-like domain PQQ PF01011.16 gi|433593520|ref|YP_007296261.1| - 1.7e-12 46.1 11.9 0.019 14.4 0.2 7.8 8 0 0 8 8 8 6 PQQ enzyme repeat PepSY PF03413.14 gi|433593520|ref|YP_007296261.1| - 0.8 10.3 3.0 1 10.0 0.1 2.7 3 1 0 3 3 3 0 Peptidase propeptide and YPEB domain Yip1 PF04893.12 gi|433593521|ref|YP_007296262.1| - 4.4e-10 39.3 11.5 7.8e-10 38.5 8.0 1.4 1 1 0 1 1 1 1 Yip1 domain Peptidase_M48 PF01435.13 gi|433593522|ref|YP_007296263.1| - 1.1e-23 83.9 0.0 4.8e-23 81.8 0.0 1.8 1 1 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.6 gi|433593522|ref|YP_007296263.1| - 0.0045 16.0 1.9 0.0045 16.0 1.3 1.9 1 1 1 2 2 2 1 BlaR1 peptidase M56 DUF45 PF01863.12 gi|433593522|ref|YP_007296263.1| - 0.039 13.7 0.0 0.08 12.7 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function DUF45 Peptidase_MA_2 PF13485.1 gi|433593522|ref|YP_007296263.1| - 0.078 13.0 0.0 0.16 12.0 0.0 1.5 1 0 0 1 1 1 0 Peptidase MA superfamily DDE_Tnp_IS1595 PF12762.2 gi|433593523|ref|YP_007296264.1| - 5.1e-17 62.1 0.1 1.6e-16 60.5 0.0 1.8 2 0 0 2 2 2 1 ISXO2-like transposase domain Zn_Tnp_IS1595 PF12760.2 gi|433593523|ref|YP_007296264.1| - 3.4e-05 23.5 3.2 8.4e-05 22.2 2.2 1.6 1 0 0 1 1 1 1 Transposase zinc-ribbon domain Zn_Tnp_IS1 PF03811.8 gi|433593523|ref|YP_007296264.1| - 0.0027 17.1 1.7 0.0027 17.1 1.2 2.4 2 0 0 2 2 2 1 InsA N-terminal domain Bac_DnaA_C PF08299.6 gi|433593523|ref|YP_007296264.1| - 0.12 12.1 0.0 0.22 11.4 0.0 1.4 1 0 0 1 1 1 0 Bacterial dnaA protein helix-turn-helix AAA_31 PF13614.1 gi|433593524|ref|YP_007296265.1| - 0.12 12.2 0.1 0.15 11.9 0.1 1.3 1 0 0 1 1 1 0 AAA domain CbiA PF01656.18 gi|433593525|ref|YP_007296266.1| - 4.2e-25 88.3 0.0 5.7e-25 87.8 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|433593525|ref|YP_007296266.1| - 1.9e-08 34.3 0.1 6.4e-08 32.6 0.0 1.9 1 1 0 1 1 1 1 AAA domain MipZ PF09140.6 gi|433593525|ref|YP_007296266.1| - 6.5e-07 28.6 0.0 0.00057 19.0 0.0 2.2 2 0 0 2 2 2 2 ATPase MipZ ArsA_ATPase PF02374.10 gi|433593525|ref|YP_007296266.1| - 0.0005 19.2 0.2 0.001 18.2 0.1 1.5 1 1 0 1 1 1 1 Anion-transporting ATPase YhjQ PF06564.7 gi|433593525|ref|YP_007296266.1| - 0.0011 18.3 0.1 0.0023 17.3 0.0 1.5 1 1 0 1 1 1 1 YhjQ protein AAA_17 PF13207.1 gi|433593525|ref|YP_007296266.1| - 0.0017 19.1 0.3 0.0078 17.0 0.0 2.1 2 1 0 2 2 2 1 AAA domain AAA_10 PF12846.2 gi|433593525|ref|YP_007296266.1| - 0.0051 16.2 0.1 0.013 14.9 0.1 1.6 1 1 0 1 1 1 1 AAA-like domain AAA_25 PF13481.1 gi|433593525|ref|YP_007296266.1| - 0.013 14.9 0.3 0.031 13.6 0.2 1.8 1 1 0 1 1 1 0 AAA domain MobB PF03205.9 gi|433593525|ref|YP_007296266.1| - 0.02 14.5 0.1 0.087 12.5 0.0 1.9 1 1 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B SRP54 PF00448.17 gi|433593525|ref|YP_007296266.1| - 0.041 13.3 0.2 0.97 8.8 0.0 2.7 3 0 0 3 3 3 0 SRP54-type protein, GTPase domain Fer4_NifH PF00142.13 gi|433593525|ref|YP_007296266.1| - 0.045 12.9 0.0 0.093 11.9 0.0 1.4 1 0 0 1 1 1 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family NTPase_1 PF03266.10 gi|433593525|ref|YP_007296266.1| - 0.12 12.0 0.0 0.3 10.8 0.0 1.6 1 0 0 1 1 1 0 NTPase Cdc6_C PF09079.6 gi|433593526|ref|YP_007296267.1| - 1.8e-16 59.6 0.7 3.3e-16 58.7 0.1 1.8 2 0 0 2 2 2 1 CDC6, C terminal AAA_22 PF13401.1 gi|433593526|ref|YP_007296267.1| - 8e-11 42.2 0.6 4.3e-10 39.8 0.0 2.1 2 0 0 2 2 2 1 AAA domain Arch_ATPase PF01637.13 gi|433593526|ref|YP_007296267.1| - 6.5e-08 32.5 0.1 1e-07 31.9 0.0 1.3 1 0 0 1 1 1 1 Archaeal ATPase AAA_16 PF13191.1 gi|433593526|ref|YP_007296267.1| - 7e-07 29.4 0.4 1.6e-06 28.2 0.3 2.0 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.24 gi|433593526|ref|YP_007296267.1| - 0.00064 19.9 0.3 0.004 17.3 0.2 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) NACHT PF05729.7 gi|433593526|ref|YP_007296267.1| - 0.004 16.8 0.0 0.0067 16.0 0.0 1.3 1 0 0 1 1 1 1 NACHT domain Mg_chelatase PF01078.16 gi|433593526|ref|YP_007296267.1| - 0.0044 16.1 0.0 0.0071 15.5 0.0 1.2 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI DUF815 PF05673.8 gi|433593526|ref|YP_007296267.1| - 0.017 14.0 0.3 0.037 12.9 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF815) DEAD PF00270.24 gi|433593526|ref|YP_007296267.1| - 0.038 13.4 0.1 12 5.3 0.0 2.5 1 1 0 2 2 2 0 DEAD/DEAH box helicase P-II PF00543.17 gi|433593526|ref|YP_007296267.1| - 0.079 13.4 0.0 0.28 11.6 0.0 1.9 2 0 0 2 2 2 0 Nitrogen regulatory protein P-II KAP_NTPase PF07693.9 gi|433593526|ref|YP_007296267.1| - 0.11 11.4 1.2 0.81 8.6 0.8 2.1 1 1 0 1 1 1 0 KAP family P-loop domain DDE_Tnp_1 PF01609.16 gi|433593527|ref|YP_007296268.1| - 9.4e-11 41.6 2.7 1.7e-10 40.8 1.9 1.4 1 0 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.6 gi|433593527|ref|YP_007296268.1| - 0.021 14.7 0.1 0.061 13.2 0.1 1.8 1 0 0 1 1 1 0 Transposase domain (DUF772) DDE_Tnp_1_assoc PF13808.1 gi|433593527|ref|YP_007296268.1| - 0.09 12.4 0.2 0.18 11.5 0.1 1.6 1 0 0 1 1 1 0 DDE_Tnp_1-associated DDE_Tnp_1 PF01609.16 gi|433593528|ref|YP_007296269.1| - 0.02 14.4 0.2 0.052 13.0 0.1 1.7 1 1 0 1 1 1 0 Transposase DDE domain Calci_bind_CcbP PF11535.3 gi|433593529|ref|YP_007296270.1| - 3.9e-38 129.9 0.2 4.5e-38 129.7 0.2 1.0 1 0 0 1 1 1 1 Calcium binding DUF4635 PF15466.1 gi|433593529|ref|YP_007296270.1| - 0.11 11.7 0.1 0.17 11.1 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4635) ResIII PF04851.10 gi|433593530|ref|YP_007296271.1| - 3.6e-22 79.1 0.0 2e-21 76.6 0.0 2.2 2 1 0 2 2 2 1 Type III restriction enzyme, res subunit Helicase_C PF00271.26 gi|433593530|ref|YP_007296271.1| - 2.5e-19 68.9 1.7 2.9e-19 68.6 0.1 1.9 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DEAD PF00270.24 gi|433593530|ref|YP_007296271.1| - 1.8e-11 43.7 0.0 4.4e-11 42.5 0.0 1.7 1 0 0 1 1 1 1 DEAD/DEAH box helicase AAA_22 PF13401.1 gi|433593530|ref|YP_007296271.1| - 0.014 15.5 0.0 0.11 12.6 0.0 2.4 2 1 1 3 3 3 0 AAA domain IstB_IS21 PF01695.12 gi|433593530|ref|YP_007296271.1| - 0.069 12.5 0.0 0.33 10.3 0.0 2.0 2 0 0 2 2 2 0 IstB-like ATP binding protein DivIVA PF05103.8 gi|433593530|ref|YP_007296271.1| - 0.13 12.3 1.5 0.22 11.5 1.1 1.3 1 0 0 1 1 1 0 DivIVA protein Helicase_C_2 PF13307.1 gi|433593530|ref|YP_007296271.1| - 0.14 12.0 1.2 2.3 8.1 0.0 3.3 3 1 1 4 4 4 0 Helicase C-terminal domain DUF790 PF05626.6 gi|433593531|ref|YP_007296272.1| - 2.5e-128 427.8 0.0 2.8e-128 427.6 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF790) CSTF2_hinge PF14327.1 gi|433593532|ref|YP_007296273.1| - 0.047 13.7 0.0 0.073 13.1 0.0 1.3 1 0 0 1 1 1 0 Hinge domain of cleavage stimulation factor subunit 2 DUF2274 PF10038.4 gi|433593532|ref|YP_007296273.1| - 0.099 12.7 1.3 5.5 7.2 0.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2274) MarR_2 PF12802.2 gi|433593533|ref|YP_007296274.1| - 1.6e-15 56.4 1.7 1.7e-08 33.9 0.5 2.6 2 0 0 2 2 2 2 MarR family TrmB PF01978.14 gi|433593533|ref|YP_007296274.1| - 1.1e-09 37.8 0.1 0.00049 19.7 0.0 2.7 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|433593533|ref|YP_007296274.1| - 4e-08 32.8 0.0 0.0037 16.9 0.0 2.5 2 0 0 2 2 2 2 MarR family HTH_24 PF13412.1 gi|433593533|ref|YP_007296274.1| - 5.9e-08 31.9 0.1 0.0076 15.6 0.0 2.5 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding Rrf2 PF02082.15 gi|433593533|ref|YP_007296274.1| - 1.4e-07 31.5 0.0 0.012 15.7 0.0 2.4 2 0 0 2 2 2 2 Transcriptional regulator HTH_IclR PF09339.5 gi|433593533|ref|YP_007296274.1| - 2.5e-07 30.1 0.1 0.036 13.6 0.0 2.8 3 0 0 3 3 2 2 IclR helix-turn-helix domain HTH_27 PF13463.1 gi|433593533|ref|YP_007296274.1| - 3.6e-07 30.4 3.0 5.3e-05 23.4 0.2 2.7 3 0 0 3 3 2 1 Winged helix DNA-binding domain HTH_29 PF13551.1 gi|433593533|ref|YP_007296274.1| - 2e-06 27.9 0.2 0.023 14.8 0.0 2.4 1 1 1 2 2 2 2 Winged helix-turn helix HTH_20 PF12840.2 gi|433593533|ref|YP_007296274.1| - 3.3e-06 26.7 0.1 0.068 12.9 0.1 2.5 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_23 PF13384.1 gi|433593533|ref|YP_007296274.1| - 2.1e-05 23.9 0.0 0.0081 15.7 0.0 2.7 2 0 0 2 2 2 1 Homeodomain-like domain HTH_38 PF13936.1 gi|433593533|ref|YP_007296274.1| - 5.3e-05 22.6 0.0 0.36 10.4 0.0 2.6 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|433593533|ref|YP_007296274.1| - 0.0003 20.5 0.0 0.12 12.2 0.0 2.7 2 1 0 2 2 2 1 Crp-like helix-turn-helix domain GntR PF00392.16 gi|433593533|ref|YP_007296274.1| - 0.00052 19.4 0.1 1.5 8.2 0.0 2.7 3 0 0 3 3 2 2 Bacterial regulatory proteins, gntR family Crp PF00325.15 gi|433593533|ref|YP_007296274.1| - 0.00054 19.3 1.2 0.0093 15.4 0.3 2.4 2 0 0 2 2 2 1 Bacterial regulatory proteins, crp family Penicillinase_R PF03965.11 gi|433593533|ref|YP_007296274.1| - 0.00083 19.4 0.0 1.9 8.6 0.0 2.5 2 0 0 2 2 2 2 Penicillinase repressor HTH_28 PF13518.1 gi|433593533|ref|YP_007296274.1| - 0.0049 16.8 0.0 0.19 11.7 0.0 2.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_41 PF14502.1 gi|433593533|ref|YP_007296274.1| - 0.006 16.1 0.0 0.06 12.9 0.0 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain GPP34 PF05719.6 gi|433593533|ref|YP_007296274.1| - 0.0085 16.1 1.0 0.015 15.4 0.7 1.6 1 1 0 1 1 1 1 Golgi phosphoprotein 3 (GPP34) HTH_5 PF01022.15 gi|433593533|ref|YP_007296274.1| - 0.0092 15.6 0.0 6.1 6.5 0.0 2.6 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family DUF746 PF05344.6 gi|433593533|ref|YP_007296274.1| - 0.043 13.3 0.0 0.13 11.8 0.0 1.8 1 0 0 1 1 1 0 Domain of Unknown Function (DUF746) RPA_C PF08784.6 gi|433593533|ref|YP_007296274.1| - 0.045 14.1 0.0 0.097 13.0 0.0 1.5 1 0 0 1 1 1 0 Replication protein A C terminal LZ_Tnp_IS481 PF13011.1 gi|433593533|ref|YP_007296274.1| - 0.048 14.0 0.0 0.1 12.9 0.0 1.5 1 0 0 1 1 1 0 leucine-zipper of insertion element IS481 Phage_rep_org_N PF09681.5 gi|433593533|ref|YP_007296274.1| - 0.058 12.9 0.0 3 7.4 0.0 2.3 2 0 0 2 2 2 0 N-terminal phage replisome organiser (Phage_rep_org_N) HTH_36 PF13730.1 gi|433593533|ref|YP_007296274.1| - 0.11 12.6 0.0 0.87 9.7 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain Fe_dep_repr_C PF02742.10 gi|433593533|ref|YP_007296274.1| - 0.28 10.8 4.7 3.5 7.3 0.4 3.1 2 1 0 2 2 2 0 Iron dependent repressor, metal binding and dimerisation domain DUF2204 PF09970.4 gi|433593534|ref|YP_007296275.1| - 0.0004 19.9 1.5 0.032 13.7 0.1 2.4 2 1 0 2 2 2 2 Nucleotidyl transferase of unknown function (DUF2204) HTH_20 PF12840.2 gi|433593534|ref|YP_007296275.1| - 0.02 14.6 0.1 0.045 13.5 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_AsnC-type PF13404.1 gi|433593534|ref|YP_007296275.1| - 0.031 13.8 0.0 0.086 12.3 0.0 1.9 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain DUF4423 PF14394.1 gi|433593534|ref|YP_007296275.1| - 0.054 13.0 0.0 0.092 12.2 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) IF2_N PF04760.10 gi|433593534|ref|YP_007296275.1| - 0.11 12.2 0.0 0.3 10.7 0.0 1.8 1 0 0 1 1 1 0 Translation initiation factor IF-2, N-terminal region PqqD PF05402.7 gi|433593534|ref|YP_007296275.1| - 0.88 9.6 3.5 17 5.4 0.1 3.1 2 1 1 3 3 3 0 Coenzyme PQQ synthesis protein D (PqqD) SWIM PF04434.12 gi|433593536|ref|YP_007296277.1| - 0.00025 20.4 0.5 0.00067 19.0 0.3 1.8 1 1 0 1 1 1 1 SWIM zinc finger TrmB PF01978.14 gi|433593539|ref|YP_007296280.1| - 0.00051 19.6 0.1 0.00082 19.0 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|433593539|ref|YP_007296280.1| - 0.003 16.8 0.8 0.0042 16.4 0.0 1.7 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|433593539|ref|YP_007296280.1| - 0.0034 17.1 0.2 0.0052 16.5 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.1 gi|433593539|ref|YP_007296280.1| - 0.022 15.0 0.1 0.064 13.5 0.0 1.7 2 0 0 2 2 2 0 Winged helix DNA-binding domain Bac_DNA_binding PF00216.16 gi|433593539|ref|YP_007296280.1| - 0.039 13.9 0.0 0.073 13.0 0.0 1.4 1 0 0 1 1 1 0 Bacterial DNA-binding protein Cdc6_C PF09079.6 gi|433593539|ref|YP_007296280.1| - 0.052 13.2 0.0 0.093 12.4 0.0 1.4 1 0 0 1 1 1 0 CDC6, C terminal MarR_2 PF12802.2 gi|433593539|ref|YP_007296280.1| - 0.054 13.1 0.0 0.098 12.3 0.0 1.4 1 0 0 1 1 1 0 MarR family HTH_29 PF13551.1 gi|433593539|ref|YP_007296280.1| - 0.11 12.6 0.3 0.52 10.4 0.0 1.9 2 0 0 2 2 2 0 Winged helix-turn helix DDRGK PF09756.4 gi|433593539|ref|YP_007296280.1| - 0.23 10.8 4.0 0.32 10.3 2.8 1.1 1 0 0 1 1 1 0 DDRGK domain OrfB_IS605 PF01385.14 gi|433593540|ref|YP_007296281.1| - 1.4e-42 145.6 0.1 2e-42 145.1 0.1 1.2 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|433593540|ref|YP_007296281.1| - 1.3e-23 82.4 1.5 2.2e-23 81.6 1.1 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Ribosomal_L37ae PF01780.14 gi|433593540|ref|YP_007296281.1| - 0.091 12.6 2.4 0.82 9.5 0.3 2.4 2 0 0 2 2 2 0 Ribosomal L37ae protein family RRN7 PF11781.3 gi|433593540|ref|YP_007296281.1| - 1.4 8.4 7.6 0.27 10.7 2.1 2.1 2 0 0 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 TF_Zn_Ribbon PF08271.7 gi|433593540|ref|YP_007296281.1| - 2.5 7.4 6.8 14 5.0 3.7 2.6 1 1 1 2 2 2 0 TFIIB zinc-binding HTH_29 PF13551.1 gi|433593541|ref|YP_007296282.1| - 3.2e-14 53.0 0.0 2.5e-13 50.1 0.0 2.4 2 1 1 3 3 3 1 Winged helix-turn helix DDE_3 PF13358.1 gi|433593541|ref|YP_007296282.1| - 1.6e-12 47.4 0.1 3.7e-12 46.2 0.0 1.6 2 0 0 2 2 2 1 DDE superfamily endonuclease HTH_32 PF13565.1 gi|433593541|ref|YP_007296282.1| - 1.9e-11 44.6 0.6 2.7e-10 40.8 0.0 2.6 2 0 0 2 2 2 1 Homeodomain-like domain HTH_23 PF13384.1 gi|433593541|ref|YP_007296282.1| - 9.7e-09 34.6 0.0 3.5e-08 32.8 0.0 2.0 2 0 0 2 2 2 1 Homeodomain-like domain HTH_33 PF13592.1 gi|433593541|ref|YP_007296282.1| - 2.9e-08 33.1 0.0 8.3e-07 28.4 0.0 2.4 2 0 0 2 2 2 1 Winged helix-turn helix HTH_28 PF13518.1 gi|433593541|ref|YP_007296282.1| - 6.6e-06 26.0 0.0 1.7e-05 24.7 0.0 1.7 2 0 0 2 2 1 1 Helix-turn-helix domain rve PF00665.21 gi|433593541|ref|YP_007296282.1| - 6.8e-05 22.9 0.0 0.00013 22.0 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain DDE_1 PF03184.14 gi|433593541|ref|YP_007296282.1| - 0.0006 19.0 0.0 0.00098 18.3 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_7 PF02796.10 gi|433593541|ref|YP_007296282.1| - 0.0015 18.3 0.1 0.0034 17.2 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase Sigma70_r4 PF04545.11 gi|433593541|ref|YP_007296282.1| - 0.0035 16.6 0.0 0.011 14.9 0.0 1.9 1 0 0 1 1 1 1 Sigma-70, region 4 DUF746 PF05344.6 gi|433593541|ref|YP_007296282.1| - 0.0099 15.3 0.0 0.029 13.8 0.0 1.8 1 0 0 1 1 1 1 Domain of Unknown Function (DUF746) LZ_Tnp_IS481 PF13011.1 gi|433593541|ref|YP_007296282.1| - 0.041 14.2 0.0 0.09 13.1 0.0 1.5 1 0 0 1 1 1 0 leucine-zipper of insertion element IS481 Sigma70_r4_2 PF08281.7 gi|433593541|ref|YP_007296282.1| - 0.048 13.1 0.1 0.17 11.3 0.0 1.9 2 0 0 2 2 2 0 Sigma-70, region 4 MacB_PCD PF12704.2 gi|433593542|ref|YP_007296283.1| - 7.1e-25 87.9 1.8 7.1e-25 87.9 1.3 1.8 2 0 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.16 gi|433593542|ref|YP_007296283.1| - 2.2e-15 56.4 11.8 3.6e-15 55.7 5.6 2.2 2 0 0 2 2 2 1 FtsX-like permease family FtsX PF02687.16 gi|433593543|ref|YP_007296284.1| - 5.7e-08 32.5 13.1 5.7e-08 32.5 9.1 2.0 2 0 0 2 2 2 1 FtsX-like permease family ABC_tran PF00005.22 gi|433593544|ref|YP_007296285.1| - 3.5e-34 118.0 0.0 4.8e-34 117.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|433593544|ref|YP_007296285.1| - 3e-07 30.7 0.0 0.015 15.2 0.0 2.1 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|433593544|ref|YP_007296285.1| - 9.1e-05 21.7 0.1 0.02 14.1 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|433593544|ref|YP_007296285.1| - 0.00029 20.2 0.2 0.00058 19.3 0.2 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_19 PF13245.1 gi|433593544|ref|YP_007296285.1| - 0.00092 18.9 3.7 0.0098 15.6 0.1 3.0 2 1 0 2 2 2 1 Part of AAA domain AAA_30 PF13604.1 gi|433593544|ref|YP_007296285.1| - 0.0092 15.5 1.0 0.044 13.3 0.0 2.1 2 0 0 2 2 2 1 AAA domain ArgK PF03308.11 gi|433593544|ref|YP_007296285.1| - 0.023 13.4 2.0 0.033 12.9 1.4 1.5 1 1 0 1 1 1 0 ArgK protein AAA_33 PF13671.1 gi|433593544|ref|YP_007296285.1| - 0.025 14.4 0.4 0.056 13.3 0.3 1.7 1 1 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|433593544|ref|YP_007296285.1| - 0.039 13.1 0.0 0.059 12.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_17 PF13207.1 gi|433593544|ref|YP_007296285.1| - 0.11 13.2 2.1 0.16 12.7 1.5 1.7 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|433593544|ref|YP_007296285.1| - 0.12 12.4 0.8 0.74 9.9 0.6 2.1 1 1 0 1 1 1 0 AAA domain FtsK_SpoIIIE PF01580.13 gi|433593544|ref|YP_007296285.1| - 0.13 11.7 1.9 1.7 8.0 0.1 2.2 2 0 0 2 2 2 0 FtsK/SpoIIIE family AAA_16 PF13191.1 gi|433593544|ref|YP_007296285.1| - 0.2 11.6 4.1 0.63 9.9 2.8 2.0 1 1 0 1 1 1 0 AAA ATPase domain DUF457 PF04307.9 gi|433593545|ref|YP_007296286.1| - 1.3e-15 57.1 6.3 1.7e-15 56.7 4.4 1.1 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) Zn_dep_PLPC PF00882.13 gi|433593545|ref|YP_007296286.1| - 0.0039 16.8 0.1 0.0058 16.2 0.1 1.3 1 0 0 1 1 1 1 Zinc dependent phospholipase C DUF4184 PF13803.1 gi|433593545|ref|YP_007296286.1| - 0.47 9.7 4.7 0.56 9.4 0.1 2.7 2 1 1 3 3 3 0 Domain of unknown function (DUF4184) Transgly_assoc PF04226.8 gi|433593545|ref|YP_007296286.1| - 1.2 9.2 4.8 0.47 10.5 0.9 2.1 2 1 1 3 3 3 0 Transglycosylase associated protein DUF3429 PF11911.3 gi|433593546|ref|YP_007296287.1| - 0.089 12.7 6.4 0.11 12.5 4.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3429) DUF4131 PF13567.1 gi|433593546|ref|YP_007296287.1| - 2.5 7.4 5.8 3.3 7.1 4.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) DUF2474 PF10617.4 gi|433593546|ref|YP_007296287.1| - 3.2 7.4 6.6 0.54 9.8 0.9 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2474) YbgT_YccB PF08173.6 gi|433593546|ref|YP_007296287.1| - 6.8 6.6 9.2 1.1 9.0 0.9 2.6 2 1 0 2 2 2 0 Membrane bound YbgT-like protein DUF4350 PF14258.1 gi|433593547|ref|YP_007296288.1| - 6.8e-08 32.6 0.2 6.8e-08 32.6 0.1 2.7 3 1 0 3 3 3 1 Domain of unknown function (DUF4350) ThuA PF06283.6 gi|433593547|ref|YP_007296288.1| - 0.0019 17.9 0.0 0.003 17.3 0.0 1.3 1 0 0 1 1 1 1 Trehalose utilisation ABC_transp_aux PF09822.4 gi|433593547|ref|YP_007296288.1| - 0.016 14.6 0.0 0.023 14.1 0.0 1.3 1 0 0 1 1 1 0 ABC-type uncharacterized transport system AAA_3 PF07726.6 gi|433593548|ref|YP_007296289.1| - 4e-61 204.4 0.1 6.2e-61 203.7 0.1 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|433593548|ref|YP_007296289.1| - 6.8e-17 61.4 0.0 1.4e-16 60.5 0.0 1.5 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) MCM PF00493.18 gi|433593548|ref|YP_007296289.1| - 6.7e-06 25.1 0.0 6.2e-05 21.9 0.0 2.1 1 1 0 1 1 1 1 MCM2/3/5 family RuvB_N PF05496.7 gi|433593548|ref|YP_007296289.1| - 0.0001 21.4 0.1 0.0006 18.9 0.1 2.1 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA PF00004.24 gi|433593548|ref|YP_007296289.1| - 0.00024 21.2 0.0 0.00077 19.6 0.0 1.9 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.16 gi|433593548|ref|YP_007296289.1| - 0.00054 19.1 0.1 0.44 9.6 0.0 2.2 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.21 gi|433593548|ref|YP_007296289.1| - 0.00058 19.3 0.1 0.0073 15.8 0.0 2.1 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA_22 PF13401.1 gi|433593548|ref|YP_007296289.1| - 0.096 12.8 0.0 0.37 10.9 0.0 2.0 1 1 0 1 1 1 0 AAA domain DUF4129 PF13559.1 gi|433593549|ref|YP_007296290.1| - 0.0017 18.2 6.7 0.0017 18.2 4.6 3.0 3 1 0 3 3 3 1 Domain of unknown function (DUF4129) DUF4455 PF14643.1 gi|433593549|ref|YP_007296290.1| - 0.0057 15.3 0.3 0.0057 15.3 0.2 1.6 2 0 0 2 2 2 1 Domain of unknown function (DUF4455) Cep57_MT_bd PF06657.8 gi|433593549|ref|YP_007296290.1| - 0.016 15.1 0.2 0.042 13.8 0.2 1.6 1 0 0 1 1 1 0 Centrosome microtubule-binding domain of Cep57 DUF964 PF06133.6 gi|433593549|ref|YP_007296290.1| - 0.045 13.7 2.1 0.12 12.4 1.4 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF964) DUF2203 PF09969.4 gi|433593549|ref|YP_007296290.1| - 0.053 13.7 1.1 0.11 12.7 0.5 1.7 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2203) DUF4407 PF14362.1 gi|433593549|ref|YP_007296290.1| - 4.9 6.0 12.9 13 4.6 9.0 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) Y1_Tnp PF01797.11 gi|433593550|ref|YP_007296291.1| - 1.4e-34 118.5 0.1 1.5e-34 118.4 0.0 1.0 1 0 0 1 1 1 1 Transposase IS200 like OrfB_Zn_ribbon PF07282.6 gi|433593551|ref|YP_007296292.1| - 3.2e-23 81.1 0.6 6e-23 80.2 0.4 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|433593551|ref|YP_007296292.1| - 0.0002 20.8 0.0 0.00038 19.9 0.0 1.6 1 0 0 1 1 1 1 Probable transposase DUF1616 PF07760.6 gi|433593552|ref|YP_007296293.1| - 8.3e-90 300.7 0.0 4.2e-78 262.3 0.0 2.0 1 1 1 2 2 2 2 Protein of unknown function (DUF1616) DDE_Tnp_1 PF01609.16 gi|433593554|ref|YP_007296295.1| - 8.1e-24 84.3 0.3 1.1e-23 83.9 0.2 1.1 1 0 0 1 1 1 1 Transposase DDE domain Glycos_transf_2 PF00535.21 gi|433593555|ref|YP_007296296.1| - 2.7e-23 82.4 0.0 3.9e-23 81.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|433593555|ref|YP_007296296.1| - 1.7e-08 34.5 0.0 2.2e-08 34.2 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.1 gi|433593555|ref|YP_007296296.1| - 0.00046 19.5 0.0 0.0023 17.2 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferase family 21 TIM-br_sig_trns PF09370.5 gi|433593555|ref|YP_007296296.1| - 0.017 14.1 0.1 0.028 13.4 0.0 1.3 1 0 0 1 1 1 0 TIM-barrel signal transduction protein NTP_transf_3 PF12804.2 gi|433593555|ref|YP_007296296.1| - 0.035 14.1 0.0 0.13 12.3 0.0 1.8 1 1 1 2 2 2 0 MobA-like NTP transferase domain Glyco_tranf_2_4 PF13704.1 gi|433593555|ref|YP_007296296.1| - 0.074 13.3 0.0 0.2 11.9 0.0 1.7 1 1 1 2 2 2 0 Glycosyl transferase family 2 DDE_Tnp_1 PF01609.16 gi|433593556|ref|YP_007296297.1| - 3e-06 26.9 0.0 5e-06 26.2 0.0 1.3 1 0 0 1 1 1 1 Transposase DDE domain Epimerase PF01370.16 gi|433593558|ref|YP_007296299.1| - 1.7e-41 142.2 0.9 2.1e-41 141.9 0.6 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|433593558|ref|YP_007296299.1| - 1.9e-13 49.9 0.1 2.5e-13 49.5 0.1 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.14 gi|433593558|ref|YP_007296299.1| - 3.7e-11 42.2 0.1 7.3e-11 41.2 0.1 1.6 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.10 gi|433593558|ref|YP_007296299.1| - 8e-10 38.0 0.9 7.9e-08 31.5 0.6 2.5 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.7 gi|433593558|ref|YP_007296299.1| - 1.6e-09 37.0 0.1 5.6e-07 28.7 0.0 2.2 2 0 0 2 2 2 2 Male sterility protein adh_short PF00106.20 gi|433593558|ref|YP_007296299.1| - 3.7e-06 26.9 0.3 0.0013 18.6 0.2 2.4 1 1 0 1 1 1 1 short chain dehydrogenase NAD_binding_10 PF13460.1 gi|433593558|ref|YP_007296299.1| - 4.4e-06 26.8 0.1 5.8e-06 26.4 0.0 1.3 1 0 0 1 1 1 1 NADH(P)-binding KR PF08659.5 gi|433593558|ref|YP_007296299.1| - 0.0093 15.6 0.0 0.55 9.8 0.0 2.3 2 0 0 2 2 2 1 KR domain 2OG-FeII_Oxy_4 PF13661.1 gi|433593558|ref|YP_007296299.1| - 0.021 14.4 0.0 0.05 13.2 0.0 1.6 1 0 0 1 1 1 0 2OG-Fe(II) oxygenase superfamily PHD PF00628.24 gi|433593559|ref|YP_007296300.1| - 0.12 12.0 0.8 0.2 11.4 0.6 1.3 1 0 0 1 1 1 0 PHD-finger ZZ PF00569.12 gi|433593559|ref|YP_007296300.1| - 0.17 11.4 1.1 0.82 9.2 0.7 1.9 1 1 0 1 1 1 0 Zinc finger, ZZ type Prok-RING_1 PF14446.1 gi|433593559|ref|YP_007296300.1| - 0.29 10.9 2.2 0.55 10.0 1.6 1.5 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 zf-C4_ClpX PF06689.8 gi|433593559|ref|YP_007296300.1| - 0.59 9.7 4.9 2.3 7.8 3.4 1.9 1 1 0 1 1 1 0 ClpX C4-type zinc finger DDE_Tnp_1 PF01609.16 gi|433593560|ref|YP_007296301.1| - 6.9e-16 58.4 0.0 9.9e-16 57.9 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain Epimerase PF01370.16 gi|433593561|ref|YP_007296302.1| - 2.5e-48 164.5 0.0 3e-48 164.3 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|433593561|ref|YP_007296302.1| - 8e-19 67.6 0.0 9.3e-19 67.3 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.10 gi|433593561|ref|YP_007296302.1| - 8.7e-17 60.9 0.0 9.6e-16 57.5 0.0 2.4 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.7 gi|433593561|ref|YP_007296302.1| - 7.3e-15 54.5 0.0 2.7e-10 39.5 0.0 2.3 2 0 0 2 2 2 2 Male sterility protein 3Beta_HSD PF01073.14 gi|433593561|ref|YP_007296302.1| - 9.9e-14 50.6 0.0 1.1e-13 50.5 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_10 PF13460.1 gi|433593561|ref|YP_007296302.1| - 2.7e-13 50.3 0.0 3.7e-13 49.9 0.0 1.2 1 0 0 1 1 1 1 NADH(P)-binding NmrA PF05368.8 gi|433593561|ref|YP_007296302.1| - 1.6e-05 24.2 0.0 0.0026 17.0 0.0 2.1 2 0 0 2 2 2 2 NmrA-like family TrkA_N PF02254.13 gi|433593561|ref|YP_007296302.1| - 2.7e-05 24.1 0.0 5.4e-05 23.1 0.0 1.5 1 0 0 1 1 1 1 TrkA-N domain adh_short PF00106.20 gi|433593561|ref|YP_007296302.1| - 0.0014 18.5 0.3 0.0058 16.5 0.1 2.1 2 0 0 2 2 2 1 short chain dehydrogenase NUDIX PF00293.23 gi|433593562|ref|YP_007296303.1| - 3.5e-08 33.1 0.2 4.3e-08 32.8 0.2 1.1 1 0 0 1 1 1 1 NUDIX domain Augurin PF15187.1 gi|433593562|ref|YP_007296303.1| - 0.14 12.0 0.0 0.2 11.5 0.0 1.2 1 0 0 1 1 1 0 Oesophageal cancer-related gene 4 NTP_transferase PF00483.18 gi|433593563|ref|YP_007296304.1| - 7.9e-37 126.8 0.0 1e-36 126.5 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|433593563|ref|YP_007296304.1| - 1.7e-10 41.2 0.0 2.3e-10 40.8 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.19 gi|433593563|ref|YP_007296304.1| - 0.00085 18.7 0.7 0.021 14.3 0.0 2.9 2 1 0 2 2 2 1 Bacterial transferase hexapeptide (six repeats) NUDIX PF00293.23 gi|433593564|ref|YP_007296305.1| - 1.3e-12 47.4 0.1 1.6e-12 47.2 0.0 1.1 1 0 0 1 1 1 1 NUDIX domain NUDIX_4 PF14815.1 gi|433593564|ref|YP_007296305.1| - 0.07 12.5 0.0 0.11 11.9 0.0 1.3 1 0 0 1 1 1 0 NUDIX domain Epimerase PF01370.16 gi|433593565|ref|YP_007296306.1| - 6.8e-69 231.8 0.0 9.4e-69 231.4 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|433593565|ref|YP_007296306.1| - 2.5e-25 88.7 0.0 3.2e-25 88.3 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.12 gi|433593565|ref|YP_007296306.1| - 3.3e-25 88.5 0.0 3.8e-25 88.3 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.10 gi|433593565|ref|YP_007296306.1| - 1.9e-20 72.9 0.0 3.3e-19 68.8 0.0 2.0 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.7 gi|433593565|ref|YP_007296306.1| - 2.6e-18 65.8 0.0 2.6e-17 62.5 0.0 2.0 1 1 0 1 1 1 1 Male sterility protein NAD_binding_10 PF13460.1 gi|433593565|ref|YP_007296306.1| - 5.5e-10 39.5 0.0 1e-09 38.6 0.0 1.4 1 0 0 1 1 1 1 NADH(P)-binding NmrA PF05368.8 gi|433593565|ref|YP_007296306.1| - 6.2e-05 22.3 0.0 0.00011 21.5 0.0 1.4 1 0 0 1 1 1 1 NmrA-like family adh_short PF00106.20 gi|433593565|ref|YP_007296306.1| - 0.00024 21.0 0.3 0.0039 17.1 0.1 2.3 2 0 0 2 2 2 1 short chain dehydrogenase KR PF08659.5 gi|433593565|ref|YP_007296306.1| - 0.0075 15.9 0.0 0.024 14.3 0.0 1.8 1 1 0 1 1 1 1 KR domain Saccharop_dh PF03435.13 gi|433593565|ref|YP_007296306.1| - 0.023 13.6 0.1 0.032 13.2 0.1 1.2 1 0 0 1 1 1 0 Saccharopine dehydrogenase Ldh_1_N PF00056.18 gi|433593565|ref|YP_007296306.1| - 0.076 12.8 0.0 0.13 12.1 0.0 1.4 1 0 0 1 1 1 0 lactate/malate dehydrogenase, NAD binding domain DapB_N PF01113.15 gi|433593565|ref|YP_007296306.1| - 0.11 12.4 0.7 0.53 10.2 0.1 2.1 2 1 0 2 2 2 0 Dihydrodipicolinate reductase, N-terminus DDE_Tnp_IS1595 PF12762.2 gi|433593566|ref|YP_007296307.1| - 2.7e-21 76.0 0.0 4.6e-21 75.2 0.0 1.4 1 0 0 1 1 1 1 ISXO2-like transposase domain Zn_Tnp_IS1595 PF12760.2 gi|433593566|ref|YP_007296307.1| - 9.4e-09 34.9 3.7 1.8e-08 34.0 2.6 1.5 1 0 0 1 1 1 1 Transposase zinc-ribbon domain Zn_Tnp_IS1 PF03811.8 gi|433593566|ref|YP_007296307.1| - 0.0022 17.4 4.2 0.0022 17.4 2.9 2.1 2 0 0 2 2 2 1 InsA N-terminal domain DUF2089 PF09862.4 gi|433593566|ref|YP_007296307.1| - 0.011 15.4 0.0 0.018 14.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2089) DUF4201 PF13870.1 gi|433593567|ref|YP_007296308.1| - 0.017 14.5 0.8 0.019 14.3 0.6 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4201) NYD-SP28 PF14772.1 gi|433593567|ref|YP_007296308.1| - 0.027 14.5 3.5 0.058 13.4 2.0 1.7 1 1 1 2 2 2 0 Sperm tail DUF2202 PF09968.4 gi|433593567|ref|YP_007296308.1| - 0.03 13.9 0.5 0.04 13.5 0.3 1.3 1 1 0 1 1 1 0 Uncharacterized protein domain (DUF2202) HhH-GPD PF00730.20 gi|433593567|ref|YP_007296308.1| - 0.08 13.2 0.0 0.15 12.3 0.0 1.4 1 1 0 1 1 1 0 HhH-GPD superfamily base excision DNA repair protein GatB_Yqey PF02637.13 gi|433593567|ref|YP_007296308.1| - 0.086 12.5 1.0 0.11 12.2 0.7 1.1 1 0 0 1 1 1 0 GatB domain TBPIP PF07106.8 gi|433593567|ref|YP_007296308.1| - 0.24 10.9 2.3 0.42 10.1 1.4 1.4 1 1 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) FUSC PF04632.7 gi|433593567|ref|YP_007296308.1| - 1.7 7.0 4.0 1.9 6.7 2.7 1.0 1 0 0 1 1 1 0 Fusaric acid resistance protein family DUF1843 PF08898.5 gi|433593567|ref|YP_007296308.1| - 7.9 6.6 9.3 3.1 7.9 1.2 2.7 2 1 1 3 3 3 0 Domain of unknown function (DUF1843) MarR_2 PF12802.2 gi|433593568|ref|YP_007296309.1| - 8.5e-06 25.3 0.0 1.3e-05 24.7 0.0 1.3 1 0 0 1 1 1 1 MarR family Rrf2 PF02082.15 gi|433593568|ref|YP_007296309.1| - 0.00047 20.2 0.0 0.00081 19.4 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator TrmB PF01978.14 gi|433593568|ref|YP_007296309.1| - 0.0027 17.3 0.0 0.0048 16.5 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_36 PF13730.1 gi|433593568|ref|YP_007296309.1| - 0.0028 17.7 0.0 0.0048 16.9 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|433593568|ref|YP_007296309.1| - 0.0029 17.3 0.0 0.0093 15.7 0.0 1.8 1 1 1 2 2 2 1 Crp-like helix-turn-helix domain HTH_27 PF13463.1 gi|433593568|ref|YP_007296309.1| - 0.0038 17.5 0.1 0.0067 16.7 0.1 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_24 PF13412.1 gi|433593568|ref|YP_007296309.1| - 0.0047 16.2 0.1 0.01 15.2 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TFIIE_alpha PF02002.12 gi|433593568|ref|YP_007296309.1| - 0.0077 15.7 0.1 0.012 15.1 0.1 1.4 1 1 0 1 1 1 1 TFIIE alpha subunit HTH_23 PF13384.1 gi|433593568|ref|YP_007296309.1| - 0.018 14.6 0.3 0.052 13.2 0.0 1.7 2 0 0 2 2 2 0 Homeodomain-like domain HTH_IclR PF09339.5 gi|433593568|ref|YP_007296309.1| - 0.018 14.6 0.0 0.028 13.9 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_11 PF08279.7 gi|433593568|ref|YP_007296309.1| - 0.024 14.2 0.1 0.037 13.6 0.0 1.3 1 0 0 1 1 1 0 HTH domain z-alpha PF02295.12 gi|433593568|ref|YP_007296309.1| - 0.029 14.1 0.0 0.049 13.4 0.0 1.4 1 0 0 1 1 1 0 Adenosine deaminase z-alpha domain HTH_45 PF14947.1 gi|433593568|ref|YP_007296309.1| - 0.03 14.1 0.0 0.04 13.7 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix Fe_dep_repress PF01325.14 gi|433593568|ref|YP_007296309.1| - 0.03 14.2 0.0 0.055 13.4 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain PaaX PF07848.7 gi|433593568|ref|YP_007296309.1| - 0.054 13.4 0.3 0.13 12.2 0.2 1.7 1 1 0 1 1 1 0 PaaX-like protein MarR PF01047.17 gi|433593568|ref|YP_007296309.1| - 0.064 12.9 0.0 0.11 12.1 0.0 1.4 1 0 0 1 1 1 0 MarR family DUF2250 PF10007.4 gi|433593568|ref|YP_007296309.1| - 0.076 12.9 0.0 0.091 12.6 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_Tnp_ISL3 PF13542.1 gi|433593568|ref|YP_007296309.1| - 0.11 11.7 0.0 0.17 11.1 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 FeoC PF09012.5 gi|433593568|ref|YP_007296309.1| - 0.11 12.1 0.0 0.19 11.4 0.0 1.3 1 0 0 1 1 1 0 FeoC like transcriptional regulator Glyco_tranf_2_4 PF13704.1 gi|433593568|ref|YP_007296309.1| - 0.77 10.1 8.0 0.4 11.0 0.1 3.0 1 1 2 3 3 3 0 Glycosyl transferase family 2 UPF0175 PF03683.8 gi|433593569|ref|YP_007296310.1| - 9.1e-16 57.0 0.9 9.1e-16 57.0 0.6 1.6 2 0 0 2 2 2 1 Uncharacterised protein family (UPF0175) RHH_1 PF01402.16 gi|433593569|ref|YP_007296310.1| - 5.2e-05 22.9 2.1 0.00023 20.8 0.4 2.6 3 1 0 3 3 3 1 Ribbon-helix-helix protein, copG family OrfB_Zn_ribbon PF07282.6 gi|433593570|ref|YP_007296311.1| - 7.2e-23 80.0 0.2 1.3e-22 79.1 0.1 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|433593570|ref|YP_007296311.1| - 3.5e-13 49.4 0.0 4.9e-13 49.0 0.0 1.2 1 0 0 1 1 1 1 Probable transposase DUF883 PF05957.8 gi|433593570|ref|YP_007296311.1| - 1.1 9.6 4.2 7 7.1 0.0 2.9 2 1 0 2 2 2 0 Bacterial protein of unknown function (DUF883) HTH_20 PF12840.2 gi|433593571|ref|YP_007296312.1| - 1.3e-12 47.2 0.1 2.1e-12 46.6 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|433593571|ref|YP_007296312.1| - 9.7e-06 25.1 0.1 1.9e-05 24.2 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|433593571|ref|YP_007296312.1| - 4.5e-05 23.6 0.0 6.7e-05 23.1 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_34 PF13601.1 gi|433593571|ref|YP_007296312.1| - 5.7e-05 23.0 0.0 8.4e-05 22.5 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.14 gi|433593571|ref|YP_007296312.1| - 6.7e-05 22.5 0.0 0.00011 21.8 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB TFIIE_alpha PF02002.12 gi|433593571|ref|YP_007296312.1| - 0.00019 20.8 0.0 0.00024 20.5 0.0 1.2 1 0 0 1 1 1 1 TFIIE alpha subunit MarR PF01047.17 gi|433593571|ref|YP_007296312.1| - 0.00046 19.8 0.0 0.00083 19.0 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|433593571|ref|YP_007296312.1| - 0.001 18.4 0.0 0.0015 17.8 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|433593571|ref|YP_007296312.1| - 0.002 17.7 0.0 0.0032 17.1 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family B-block_TFIIIC PF04182.7 gi|433593571|ref|YP_007296312.1| - 0.011 15.5 0.0 0.017 14.9 0.0 1.3 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC HEAT_2 PF13646.1 gi|433593573|ref|YP_007296314.1| - 4.5e-05 23.6 4.1 0.00056 20.1 1.6 2.4 1 1 1 2 2 2 1 HEAT repeats HEAT PF02985.17 gi|433593573|ref|YP_007296314.1| - 0.001 18.9 0.3 0.0037 17.2 0.1 2.1 2 0 0 2 2 2 1 HEAT repeat HEAT_EZ PF13513.1 gi|433593573|ref|YP_007296314.1| - 0.0025 18.2 0.4 0.031 14.7 0.4 2.6 2 1 0 2 2 2 1 HEAT-like repeat HCMV_UL139 PF12507.3 gi|433593573|ref|YP_007296314.1| - 0.013 15.6 0.3 0.025 14.7 0.2 1.4 1 0 0 1 1 1 0 Human Cytomegalovirus UL139 protein DUF4375 PF14300.1 gi|433593573|ref|YP_007296314.1| - 0.2 11.6 1.2 6.4 6.7 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4375) FlgN PF05130.7 gi|433593573|ref|YP_007296314.1| - 0.23 11.7 4.5 2 8.6 1.9 2.3 2 1 0 2 2 2 0 FlgN protein CDC37_C PF08564.5 gi|433593573|ref|YP_007296314.1| - 0.3 10.9 3.5 2.4 8.0 0.1 2.8 2 1 1 3 3 3 0 Cdc37 C terminal domain CBM_X2 PF03442.9 gi|433593574|ref|YP_007296315.1| - 0.11 12.3 0.0 0.14 12.0 0.0 1.2 1 0 0 1 1 1 0 Carbohydrate binding domain X2 SWIM PF04434.12 gi|433593576|ref|YP_007296317.1| - 8.2e-09 34.7 0.4 1.6e-08 33.8 0.3 1.5 1 0 0 1 1 1 1 SWIM zinc finger TPR_12 PF13424.1 gi|433593576|ref|YP_007296317.1| - 0.38 10.7 15.9 3.9 7.4 0.8 5.5 4 1 1 5 5 5 0 Tetratricopeptide repeat TPR_16 PF13432.1 gi|433593576|ref|YP_007296317.1| - 5.6 7.7 25.9 0.2 12.3 1.5 6.2 7 1 0 7 7 7 0 Tetratricopeptide repeat PRiA4_ORF3 PF07929.6 gi|433593577|ref|YP_007296318.1| - 0.027 13.9 0.1 0.057 12.8 0.0 1.6 1 1 1 2 2 2 0 Plasmid pRiA4b ORF-3-like protein MarR_2 PF12802.2 gi|433593578|ref|YP_007296319.1| - 4.2e-06 26.3 0.0 6e-06 25.8 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.1 gi|433593578|ref|YP_007296319.1| - 5e-05 23.0 0.0 6.8e-05 22.5 0.0 1.2 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_11 PF08279.7 gi|433593578|ref|YP_007296319.1| - 5.8e-05 22.6 0.0 9.5e-05 21.9 0.0 1.4 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.2 gi|433593578|ref|YP_007296319.1| - 0.00055 19.6 0.0 0.00086 19.0 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|433593578|ref|YP_007296319.1| - 0.00078 19.1 0.0 0.0011 18.6 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|433593578|ref|YP_007296319.1| - 0.00087 18.6 0.0 0.0012 18.1 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_36 PF13730.1 gi|433593578|ref|YP_007296319.1| - 0.0017 18.4 0.0 0.002 18.1 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.17 gi|433593578|ref|YP_007296319.1| - 0.0033 17.2 0.0 0.0062 16.3 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix HTH_45 PF14947.1 gi|433593578|ref|YP_007296319.1| - 0.0044 16.7 0.0 0.0061 16.3 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix MarR PF01047.17 gi|433593578|ref|YP_007296319.1| - 0.014 15.1 0.0 0.021 14.4 0.0 1.2 1 0 0 1 1 1 0 MarR family LacI PF00356.16 gi|433593578|ref|YP_007296319.1| - 0.017 14.7 0.0 0.032 13.8 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, lacI family GntR PF00392.16 gi|433593578|ref|YP_007296319.1| - 0.019 14.4 0.0 0.028 13.8 0.0 1.2 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family DUF1323 PF07037.6 gi|433593578|ref|YP_007296319.1| - 0.033 14.3 0.0 0.077 13.1 0.0 1.6 1 1 1 2 2 2 0 Putative transcription regulator (DUF1323) HTH_IclR PF09339.5 gi|433593578|ref|YP_007296319.1| - 0.04 13.5 0.0 0.056 13.0 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_23 PF13384.1 gi|433593578|ref|YP_007296319.1| - 0.047 13.3 0.0 0.08 12.6 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain DUF4423 PF14394.1 gi|433593578|ref|YP_007296319.1| - 0.068 12.7 0.0 0.072 12.6 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_26 PF13443.1 gi|433593578|ref|YP_007296319.1| - 0.073 13.2 0.0 0.12 12.5 0.0 1.3 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain HTH_5 PF01022.15 gi|433593578|ref|YP_007296319.1| - 0.097 12.3 0.0 0.16 11.6 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_27 PF13463.1 gi|433593578|ref|YP_007296319.1| - 0.11 12.8 0.0 0.17 12.2 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain Cyclase_polyket PF04673.7 gi|433593578|ref|YP_007296319.1| - 0.12 12.4 0.0 0.17 11.9 0.0 1.3 1 0 0 1 1 1 0 Polyketide synthesis cyclase DUF2080 PF09853.4 gi|433593580|ref|YP_007296321.1| - 0.013 15.1 0.0 0.017 14.8 0.0 1.1 1 0 0 1 1 1 0 Putative transposon-encoded protein (DUF2080) OrfB_Zn_ribbon PF07282.6 gi|433593581|ref|YP_007296322.1| - 9.9e-19 66.7 0.1 2.2e-18 65.6 0.1 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|433593581|ref|YP_007296322.1| - 3.4e-06 26.6 0.0 7.9e-06 25.4 0.0 1.6 1 0 0 1 1 1 1 Probable transposase zf-Di19 PF05605.7 gi|433593581|ref|YP_007296322.1| - 0.01 15.9 5.2 0.01 15.9 3.6 2.0 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding TerY-C PF15616.1 gi|433593581|ref|YP_007296322.1| - 0.032 14.1 0.3 0.065 13.1 0.2 1.5 1 0 0 1 1 1 0 TerY-C metal binding domain zf-NADH-PPase PF09297.6 gi|433593581|ref|YP_007296322.1| - 0.049 13.1 0.4 0.049 13.1 0.3 2.9 3 0 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain DZR PF12773.2 gi|433593581|ref|YP_007296322.1| - 0.074 12.8 2.1 0.23 11.3 1.5 1.8 1 0 0 1 1 1 0 Double zinc ribbon Elf1 PF05129.8 gi|433593581|ref|YP_007296322.1| - 0.087 12.5 0.4 0.23 11.1 0.3 1.7 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like Zn_Tnp_IS1595 PF12760.2 gi|433593581|ref|YP_007296322.1| - 3.9 7.3 9.4 44 3.9 5.9 2.4 1 1 0 1 1 1 0 Transposase zinc-ribbon domain DDE_Tnp_1 PF01609.16 gi|433593582|ref|YP_007296323.1| - 5.1e-21 75.2 0.0 8.6e-21 74.4 0.0 1.4 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_4 PF13359.1 gi|433593582|ref|YP_007296323.1| - 1e-05 25.1 0.0 0.085 12.4 0.0 2.3 2 0 0 2 2 2 2 DDE superfamily endonuclease DDE_Tnp_1_2 PF13586.1 gi|433593582|ref|YP_007296323.1| - 1.3e-05 25.2 0.4 0.0032 17.6 0.2 2.6 2 0 0 2 2 2 1 Transposase DDE domain DUF772 PF05598.6 gi|433593582|ref|YP_007296323.1| - 3e-05 23.8 0.0 6.4e-05 22.7 0.0 1.5 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1_3 PF13612.1 gi|433593582|ref|YP_007296323.1| - 0.00064 19.4 0.1 0.02 14.6 0.0 2.3 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1_6 PF13751.1 gi|433593582|ref|YP_007296323.1| - 0.0012 18.8 0.2 0.0026 17.7 0.2 1.4 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_assoc PF13808.1 gi|433593582|ref|YP_007296323.1| - 0.045 13.4 0.1 0.19 11.4 0.0 2.1 2 0 0 2 2 2 0 DDE_Tnp_1-associated DDE_Tnp_1 PF01609.16 gi|433593583|ref|YP_007296324.1| - 9.4e-11 41.6 2.7 1.7e-10 40.8 1.9 1.4 1 0 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.6 gi|433593583|ref|YP_007296324.1| - 0.021 14.7 0.1 0.061 13.2 0.1 1.8 1 0 0 1 1 1 0 Transposase domain (DUF772) DDE_Tnp_1_assoc PF13808.1 gi|433593583|ref|YP_007296324.1| - 0.09 12.4 0.2 0.18 11.5 0.1 1.6 1 0 0 1 1 1 0 DDE_Tnp_1-associated