#                                                                           --- full sequence ---- --- best 1 domain ---- --- domain number estimation ----
# target name        accession  query name                       accession    E-value  score  bias   E-value  score  bias   exp reg clu  ov env dom rep inc description of target
#------------------- ----------             -------------------- ---------- --------- ------ ----- --------- ------ -----   --- --- --- --- --- --- --- --- ---------------------
Cdc6_C	PF09079.11	gi|433593319|ref|YP_007296060.1|	-	2.6e-20	72.2	0.1	6.6e-20	70.9	0.1	1.7	1	0	0	1	1	1	1	CDC6,	C	terminal	winged	helix	domain
AAA_22	PF13401.6	gi|433593319|ref|YP_007296060.1|	-	1.8e-11	44.5	0.0	4.8e-11	43.1	0.0	1.7	1	0	0	1	1	1	1	AAA	domain
AAA_16	PF13191.6	gi|433593319|ref|YP_007296060.1|	-	1.2e-09	38.8	0.0	4e-08	33.8	0.0	2.9	2	1	0	2	2	2	1	AAA	ATPase	domain
AAA	PF00004.29	gi|433593319|ref|YP_007296060.1|	-	2.4e-06	28.0	0.0	6.2e-06	26.7	0.0	1.8	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
ATPase_2	PF01637.18	gi|433593319|ref|YP_007296060.1|	-	0.00028	20.9	0.0	0.00054	20.0	0.0	1.4	1	0	0	1	1	1	1	ATPase	domain	predominantly	from	Archaea
TniB	PF05621.11	gi|433593319|ref|YP_007296060.1|	-	0.00069	19.1	0.0	0.0012	18.3	0.0	1.3	1	0	0	1	1	1	1	Bacterial	TniB	protein
DUF815	PF05673.13	gi|433593319|ref|YP_007296060.1|	-	0.00083	18.6	0.0	0.0014	17.8	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF815)
NACHT	PF05729.12	gi|433593319|ref|YP_007296060.1|	-	0.0028	17.6	0.0	0.005	16.8	0.0	1.4	1	0	0	1	1	1	1	NACHT	domain
AAA_18	PF13238.6	gi|433593319|ref|YP_007296060.1|	-	0.013	16.0	0.1	0.049	14.2	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
AAA_5	PF07728.14	gi|433593319|ref|YP_007296060.1|	-	0.013	15.5	0.0	0.15	12.0	0.0	2.5	3	0	0	3	3	3	0	AAA	domain	(dynein-related	subfamily)
AAA_32	PF13654.6	gi|433593319|ref|YP_007296060.1|	-	0.017	13.9	0.2	4.4	6.0	0.0	2.2	2	0	0	2	2	2	0	AAA	domain
RNA_helicase	PF00910.22	gi|433593319|ref|YP_007296060.1|	-	0.02	15.3	0.0	0.036	14.4	0.0	1.4	1	0	0	1	1	1	0	RNA	helicase
NB-ARC	PF00931.22	gi|433593319|ref|YP_007296060.1|	-	0.027	13.7	0.0	0.042	13.0	0.0	1.3	1	0	0	1	1	1	0	NB-ARC	domain
AAA_7	PF12775.7	gi|433593319|ref|YP_007296060.1|	-	0.061	12.8	0.0	0.11	12.0	0.0	1.3	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
Sigma54_activat	PF00158.26	gi|433593319|ref|YP_007296060.1|	-	0.081	12.6	0.0	0.19	11.4	0.0	1.6	2	0	0	2	2	2	0	Sigma-54	interaction	domain
RsgA_GTPase	PF03193.16	gi|433593319|ref|YP_007296060.1|	-	0.097	12.6	0.0	0.28	11.1	0.0	1.8	1	0	0	1	1	1	0	RsgA	GTPase
CHASE8	PF17152.4	gi|433593319|ref|YP_007296060.1|	-	0.12	12.6	0.3	0.27	11.5	0.3	1.5	1	0	0	1	1	1	0	Periplasmic	sensor	domain
TsaE	PF02367.17	gi|433593319|ref|YP_007296060.1|	-	0.17	11.9	0.0	0.39	10.7	0.0	1.5	1	0	0	1	1	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
OrfB_Zn_ribbon	PF07282.11	gi|433593320|ref|YP_007296061.1|	-	5.2e-22	77.6	2.5	5.2e-22	77.6	2.5	1.8	2	0	0	2	2	2	1	Putative	transposase	DNA-binding	domain
OrfB_IS605	PF01385.19	gi|433593320|ref|YP_007296061.1|	-	1.6e-07	31.6	0.0	3.7e-07	30.4	0.0	1.7	1	0	0	1	1	1	1	Probable	transposase
HypA	PF01155.19	gi|433593320|ref|YP_007296061.1|	-	0.0042	17.1	0.4	0.0096	15.9	0.4	1.6	1	0	0	1	1	1	1	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
C1_2	PF03107.16	gi|433593320|ref|YP_007296061.1|	-	0.036	14.4	2.0	0.095	13.0	2.0	1.7	1	0	0	1	1	1	0	C1	domain
DNA_RNApol_7kD	PF03604.13	gi|433593320|ref|YP_007296061.1|	-	0.68	9.7	2.7	4.3	7.1	2.9	2.1	1	1	1	2	2	2	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
zinc_ribbon_2	PF13240.6	gi|433593320|ref|YP_007296061.1|	-	1.5	8.6	6.4	9.2	6.1	6.5	2.2	1	1	1	2	2	2	0	zinc-ribbon	domain
Rubredoxin_2	PF18073.1	gi|433593320|ref|YP_007296061.1|	-	5.6	6.8	15.9	1.5	8.6	1.5	3.5	3	0	0	3	3	3	0	Rubredoxin	metal	binding	domain
DUF2383	PF09537.10	gi|433593321|ref|YP_007296062.1|	-	0.02	15.2	0.7	0.078	13.3	0.6	2.0	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF2383)
UVR	PF02151.19	gi|433593321|ref|YP_007296062.1|	-	0.02	14.6	2.4	0.058	13.2	2.4	1.9	1	0	0	1	1	1	0	UvrB/uvrC	motif
ABC_tran_CTD	PF16326.5	gi|433593321|ref|YP_007296062.1|	-	0.023	14.9	3.7	0.077	13.3	2.7	2.4	1	1	0	1	1	1	0	ABC	transporter	C-terminal	domain
DivIC	PF04977.15	gi|433593321|ref|YP_007296062.1|	-	0.058	13.2	2.9	0.077	12.8	1.4	2.0	2	0	0	2	2	2	0	Septum	formation	initiator
PTPlike_phytase	PF14566.6	gi|433593321|ref|YP_007296062.1|	-	0.3	11.2	2.6	0.88	9.7	1.0	2.4	3	0	0	3	3	3	0	Inositol	hexakisphosphate
HEAT_2	PF13646.6	gi|433593322|ref|YP_007296063.1|	-	0.003	17.9	4.0	0.0052	17.1	1.1	2.2	2	1	0	2	2	2	1	HEAT	repeats
HEAT	PF02985.22	gi|433593322|ref|YP_007296063.1|	-	0.012	15.8	0.7	0.11	12.8	0.1	2.8	3	0	0	3	3	3	0	HEAT	repeat
DUF2937	PF11157.8	gi|433593322|ref|YP_007296063.1|	-	0.018	14.8	1.1	0.37	10.5	0.3	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2937)
HEAT_EZ	PF13513.6	gi|433593322|ref|YP_007296063.1|	-	2.3	8.8	5.0	0.41	11.2	0.3	2.3	3	0	0	3	3	3	0	HEAT-like	repeat
FXR_C1	PF16096.5	gi|433593323|ref|YP_007296064.1|	-	0.025	14.8	1.2	1.1	9.6	0.4	2.3	2	0	0	2	2	2	0	Fragile	X-related	1	protein	C-terminal	region	2
TFIIB	PF00382.19	gi|433593324|ref|YP_007296065.1|	-	5.3e-08	32.8	0.7	2.8e-05	24.1	0.0	2.6	2	1	0	2	2	2	2	Transcription	factor	TFIIB	repeat
TF_Zn_Ribbon	PF08271.12	gi|433593324|ref|YP_007296065.1|	-	0.00081	18.8	1.7	0.0018	17.7	1.7	1.5	1	0	0	1	1	1	1	TFIIB	zinc-binding
DZR	PF12773.7	gi|433593324|ref|YP_007296065.1|	-	0.022	14.8	0.5	0.054	13.5	0.5	1.6	1	0	0	1	1	1	0	Double	zinc	ribbon
zf-ribbon_3	PF13248.6	gi|433593324|ref|YP_007296065.1|	-	0.034	13.6	1.4	0.087	12.3	1.4	1.7	1	0	0	1	1	1	0	zinc-ribbon	domain
TAFA	PF12020.8	gi|433593324|ref|YP_007296065.1|	-	0.15	12.5	1.8	0.76	10.3	0.1	2.3	2	0	0	2	2	2	0	TAFA	family
TrmB	PF01978.19	gi|433593325|ref|YP_007296066.1|	-	0.00017	21.4	0.0	0.0019	18.1	0.0	2.2	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_IclR	PF09339.10	gi|433593325|ref|YP_007296066.1|	-	0.0099	15.7	0.0	0.019	14.8	0.0	1.5	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_29	PF13551.6	gi|433593325|ref|YP_007296066.1|	-	0.054	13.5	0.0	0.24	11.4	0.0	2.0	2	0	0	2	2	2	0	Winged	helix-turn	helix
AbiEii	PF08843.11	gi|433593326|ref|YP_007296067.1|	-	4.6e-05	23.5	2.2	7.2e-05	22.9	2.2	1.3	1	0	0	1	1	1	1	Nucleotidyl	transferase	AbiEii	toxin,	Type	IV	TA	system
PSK_trans_fac	PF07704.11	gi|433593327|ref|YP_007296068.1|	-	0.0094	16.7	4.3	0.025	15.3	4.3	1.6	1	1	0	1	1	1	1	Rv0623-like	transcription	factor
TrmB	PF01978.19	gi|433593328|ref|YP_007296069.1|	-	0.00053	19.8	0.0	0.0017	18.2	0.0	1.7	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
3HCDH_RFF	PF18321.1	gi|433593328|ref|YP_007296069.1|	-	0.047	14.1	0.3	0.2	12.1	0.0	2.1	2	0	0	2	2	2	0	3-hydroxybutyryl-CoA	dehydrogenase	reduced	Rossmann-fold	domain
AAA_31	PF13614.6	gi|433593330|ref|YP_007296071.1|	-	3.6e-31	108.4	0.0	4.8e-31	108.0	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
CbiA	PF01656.23	gi|433593330|ref|YP_007296071.1|	-	2.8e-13	50.0	0.0	3.9e-13	49.6	0.0	1.3	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
MipZ	PF09140.11	gi|433593330|ref|YP_007296071.1|	-	1.9e-10	40.5	0.0	4.9e-08	32.6	0.0	2.2	1	1	0	1	1	1	1	ATPase	MipZ
CBP_BcsQ	PF06564.12	gi|433593330|ref|YP_007296071.1|	-	4.4e-09	36.2	0.0	6.9e-09	35.5	0.0	1.2	1	0	0	1	1	1	1	Cellulose	biosynthesis	protein	BcsQ
ParA	PF10609.9	gi|433593330|ref|YP_007296071.1|	-	5.3e-07	29.3	0.1	1.1e-06	28.2	0.0	1.5	2	0	0	2	2	2	1	NUBPL	iron-transfer	P-loop	NTPase
Fer4_NifH	PF00142.18	gi|433593330|ref|YP_007296071.1|	-	0.00032	20.2	0.0	0.00074	19.0	0.0	1.6	1	0	0	1	1	1	1	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
VirC1	PF07015.11	gi|433593330|ref|YP_007296071.1|	-	0.004	16.5	0.1	0.018	14.4	0.1	1.9	2	0	0	2	2	2	1	VirC1	protein
ArsA_ATPase	PF02374.15	gi|433593330|ref|YP_007296071.1|	-	0.011	15.0	0.3	0.039	13.1	0.0	2.0	2	1	0	2	2	2	0	Anion-transporting	ATPase
SPX	PF03105.19	gi|433593331|ref|YP_007296072.1|	-	2	8.3	10.7	2.3	8.0	10.7	1.0	1	0	0	1	1	1	0	SPX	domain
Presenilin	PF01080.17	gi|433593331|ref|YP_007296072.1|	-	6.6	5.4	7.0	7	5.3	7.0	1.1	1	0	0	1	1	1	0	Presenilin
Cdc6_C	PF09079.11	gi|433593333|ref|YP_007296074.1|	-	6.2e-16	58.1	0.1	1.8e-15	56.7	0.1	1.9	1	0	0	1	1	1	1	CDC6,	C	terminal	winged	helix	domain
AAA_22	PF13401.6	gi|433593333|ref|YP_007296074.1|	-	2.2e-13	50.7	0.1	9.1e-13	48.7	0.0	2.0	1	1	0	2	2	2	1	AAA	domain
AAA_16	PF13191.6	gi|433593333|ref|YP_007296074.1|	-	2.4e-11	44.3	3.7	6.8e-09	36.3	3.6	3.1	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA	PF00004.29	gi|433593333|ref|YP_007296074.1|	-	8.1e-06	26.3	0.0	2.2e-05	24.9	0.0	1.8	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
ATPase_2	PF01637.18	gi|433593333|ref|YP_007296074.1|	-	1.6e-05	24.9	0.0	3.9e-05	23.7	0.0	1.6	1	1	0	1	1	1	1	ATPase	domain	predominantly	from	Archaea
NACHT	PF05729.12	gi|433593333|ref|YP_007296074.1|	-	7.6e-05	22.7	0.0	0.00021	21.2	0.0	1.8	2	0	0	2	2	2	1	NACHT	domain
DEAD	PF00270.29	gi|433593333|ref|YP_007296074.1|	-	0.00045	20.0	0.3	0.42	10.4	0.1	2.4	1	1	0	2	2	2	2	DEAD/DEAH	box	helicase
DUF87	PF01935.17	gi|433593333|ref|YP_007296074.1|	-	0.00088	19.4	0.9	2.8	8.0	0.0	3.2	3	0	0	3	3	3	1	Helicase	HerA,	central	domain
NB-ARC	PF00931.22	gi|433593333|ref|YP_007296074.1|	-	0.0013	18.0	0.0	0.0032	16.7	0.0	1.6	2	0	0	2	2	2	1	NB-ARC	domain
Sigma54_activat	PF00158.26	gi|433593333|ref|YP_007296074.1|	-	0.0015	18.3	0.0	0.0032	17.2	0.0	1.6	1	0	0	1	1	1	1	Sigma-54	interaction	domain
TniB	PF05621.11	gi|433593333|ref|YP_007296074.1|	-	0.0028	17.1	0.0	0.0057	16.1	0.0	1.4	1	0	0	1	1	1	1	Bacterial	TniB	protein
KAP_NTPase	PF07693.14	gi|433593333|ref|YP_007296074.1|	-	0.004	16.4	2.2	0.077	12.2	0.0	2.9	2	1	1	3	3	3	1	KAP	family	P-loop	domain
AAA_7	PF12775.7	gi|433593333|ref|YP_007296074.1|	-	0.0058	16.2	0.0	0.1	12.1	0.0	2.4	2	0	0	2	2	2	1	P-loop	containing	dynein	motor	region
DUF815	PF05673.13	gi|433593333|ref|YP_007296074.1|	-	0.0071	15.5	0.0	0.012	14.7	0.0	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF815)
RNA_helicase	PF00910.22	gi|433593333|ref|YP_007296074.1|	-	0.0076	16.6	0.0	0.031	14.7	0.0	2.0	2	0	0	2	2	2	1	RNA	helicase
AAA_2	PF07724.14	gi|433593333|ref|YP_007296074.1|	-	0.013	15.7	0.0	0.029	14.5	0.0	1.6	1	0	0	1	1	1	0	AAA	domain	(Cdc48	subfamily)
AAA_24	PF13479.6	gi|433593333|ref|YP_007296074.1|	-	0.021	14.6	0.0	0.042	13.6	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_18	PF13238.6	gi|433593333|ref|YP_007296074.1|	-	0.022	15.3	0.1	0.12	12.9	0.0	2.3	3	0	0	3	3	2	0	AAA	domain
PIF1	PF05970.14	gi|433593333|ref|YP_007296074.1|	-	0.022	13.9	0.0	0.039	13.1	0.0	1.4	1	0	0	1	1	1	0	PIF1-like	helicase
T2SSE	PF00437.20	gi|433593333|ref|YP_007296074.1|	-	0.023	13.8	0.0	0.049	12.7	0.0	1.5	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
AAA_32	PF13654.6	gi|433593333|ref|YP_007296074.1|	-	0.028	13.2	0.2	0.44	9.3	0.0	2.2	2	0	0	2	2	2	0	AAA	domain
AAA_5	PF07728.14	gi|433593333|ref|YP_007296074.1|	-	0.037	14.0	0.0	12	5.9	0.0	2.9	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
Zeta_toxin	PF06414.12	gi|433593333|ref|YP_007296074.1|	-	0.047	13.0	0.0	0.11	11.8	0.0	1.5	1	0	0	1	1	1	0	Zeta	toxin
DUF2075	PF09848.9	gi|433593333|ref|YP_007296074.1|	-	0.049	12.9	0.0	0.12	11.6	0.0	1.7	2	0	0	2	2	2	0	Uncharacterized	conserved	protein	(DUF2075)
MMR_HSR1	PF01926.23	gi|433593333|ref|YP_007296074.1|	-	0.055	13.6	0.2	0.19	11.9	0.0	2.0	2	1	0	2	2	1	0	50S	ribosome-binding	GTPase
TrwB_AAD_bind	PF10412.9	gi|433593333|ref|YP_007296074.1|	-	0.069	12.0	0.0	0.23	10.3	0.0	1.8	2	0	0	2	2	2	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
RuvB_N	PF05496.12	gi|433593333|ref|YP_007296074.1|	-	0.089	12.5	0.0	0.34	10.6	0.0	1.9	2	0	0	2	2	2	0	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
RsgA_GTPase	PF03193.16	gi|433593333|ref|YP_007296074.1|	-	0.12	12.2	0.0	0.54	10.1	0.0	2.0	2	0	0	2	2	2	0	RsgA	GTPase
AAA_lid_4	PF17864.1	gi|433593333|ref|YP_007296074.1|	-	0.14	11.9	0.6	0.44	10.3	0.2	2.1	2	0	0	2	2	1	0	RuvB	AAA	lid	domain
AAA_assoc_2	PF16193.5	gi|433593333|ref|YP_007296074.1|	-	0.16	12.4	0.5	0.44	10.9	0.3	1.9	2	0	0	2	2	1	0	AAA	C-terminal	domain
AAA_33	PF13671.6	gi|433593333|ref|YP_007296074.1|	-	0.17	12.1	0.8	0.74	10.0	0.0	2.3	2	1	0	2	2	2	0	AAA	domain
DUF3027	PF11228.8	gi|433593335|ref|YP_007296076.1|	-	0.04	13.9	2.0	0.54	10.3	0.4	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3027)
HypA	PF01155.19	gi|433593335|ref|YP_007296076.1|	-	0.087	12.9	5.3	3.6	7.6	0.5	2.3	2	0	0	2	2	2	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zf-CRD	PF17979.1	gi|433593335|ref|YP_007296076.1|	-	0.13	12.4	4.7	1.9	8.6	0.8	2.3	2	0	0	2	2	2	0	Cysteine	rich	domain	with	multizinc	binding	regions
zinc_ribbon_15	PF17032.5	gi|433593335|ref|YP_007296076.1|	-	0.14	12.9	8.7	1.1	10.0	0.2	3.2	3	1	0	4	4	4	0	zinc-ribbon	family
zf-ribbon_3	PF13248.6	gi|433593335|ref|YP_007296076.1|	-	0.15	11.5	8.4	0.039	13.4	2.5	2.9	3	0	0	3	3	3	0	zinc-ribbon	domain
RNA_POL_M_15KD	PF02150.16	gi|433593335|ref|YP_007296076.1|	-	0.53	10.2	10.8	2.7	7.9	0.1	4.2	4	0	0	4	4	4	0	RNA	polymerases	M/15	Kd	subunit
DZR	PF12773.7	gi|433593335|ref|YP_007296076.1|	-	0.98	9.5	11.0	0.52	10.4	0.3	3.4	2	1	0	2	2	2	0	Double	zinc	ribbon
C1_1	PF00130.22	gi|433593335|ref|YP_007296076.1|	-	1.4	8.9	6.0	18	5.3	0.8	2.9	2	1	0	2	2	2	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
zf-RanBP	PF00641.18	gi|433593335|ref|YP_007296076.1|	-	6.2	6.2	7.5	11	5.4	0.1	2.8	2	1	0	2	2	2	0	Zn-finger	in	Ran	binding	protein	and	others
TFIIB	PF00382.19	gi|433593336|ref|YP_007296077.1|	-	2.2e-27	94.9	0.1	9.5e-15	54.4	0.1	2.4	2	0	0	2	2	2	2	Transcription	factor	TFIIB	repeat
TF_Zn_Ribbon	PF08271.12	gi|433593336|ref|YP_007296077.1|	-	2e-13	49.6	2.6	4.1e-13	48.6	2.6	1.6	1	0	0	1	1	1	1	TFIIB	zinc-binding
DZR	PF12773.7	gi|433593336|ref|YP_007296077.1|	-	0.0014	18.6	1.3	0.0031	17.5	1.3	1.5	1	0	0	1	1	1	1	Double	zinc	ribbon
OrfB_Zn_ribbon	PF07282.11	gi|433593336|ref|YP_007296077.1|	-	0.013	15.4	1.5	0.031	14.2	1.5	1.5	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
DUF1670	PF07900.11	gi|433593336|ref|YP_007296077.1|	-	0.016	14.6	0.0	0.027	13.8	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1670)
RB_B	PF01857.20	gi|433593336|ref|YP_007296077.1|	-	0.042	13.9	0.0	0.076	13.0	0.0	1.3	1	0	0	1	1	1	0	Retinoblastoma-associated	protein	B	domain
Zn-ribbon_8	PF09723.10	gi|433593336|ref|YP_007296077.1|	-	0.16	12.1	4.0	0.9	9.7	0.4	2.6	1	1	2	3	3	3	0	Zinc	ribbon	domain
zf-ribbon_3	PF13248.6	gi|433593336|ref|YP_007296077.1|	-	0.39	10.2	3.7	1.8	8.1	0.6	2.3	1	1	1	2	2	2	0	zinc-ribbon	domain
tRNA_anti-codon	PF01336.25	gi|433593337|ref|YP_007296078.1|	-	0.0088	16.0	0.1	0.021	14.8	0.1	1.7	1	0	0	1	1	1	1	OB-fold	nucleic	acid	binding	domain
TrmB	PF01978.19	gi|433593340|ref|YP_007296081.1|	-	3.9e-07	29.9	0.0	2.2e-06	27.4	0.0	2.2	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_IclR	PF09339.10	gi|433593340|ref|YP_007296081.1|	-	2.7e-05	23.9	0.0	7.4e-05	22.5	0.0	1.7	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
MarR_2	PF12802.7	gi|433593340|ref|YP_007296081.1|	-	0.00044	20.1	0.0	0.0011	18.8	0.0	1.7	1	0	0	1	1	1	1	MarR	family
HTH_20	PF12840.7	gi|433593340|ref|YP_007296081.1|	-	0.00065	19.7	0.0	0.0013	18.7	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_17	PF12728.7	gi|433593340|ref|YP_007296081.1|	-	0.0036	17.5	0.0	0.0077	16.4	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_24	PF13412.6	gi|433593340|ref|YP_007296081.1|	-	0.015	14.8	0.0	0.025	14.1	0.0	1.4	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
MarR	PF01047.22	gi|433593340|ref|YP_007296081.1|	-	0.038	13.9	0.0	0.088	12.8	0.0	1.5	1	0	0	1	1	1	0	MarR	family
HTH_29	PF13551.6	gi|433593340|ref|YP_007296081.1|	-	0.047	13.7	0.0	0.088	12.8	0.0	1.4	1	0	0	1	1	1	0	Winged	helix-turn	helix
HTH_5	PF01022.20	gi|433593340|ref|YP_007296081.1|	-	0.047	13.5	0.0	0.11	12.3	0.0	1.6	2	0	0	2	2	2	0	Bacterial	regulatory	protein,	arsR	family
BsuBI_PstI_RE_N	PF17728.1	gi|433593343|ref|YP_007296084.1|	-	0.084	12.7	1.5	0.097	12.5	0.2	1.8	2	1	0	2	2	2	0	BsuBI/PstI	restriction	endonuclease	HTH	domain
FlxA	PF14282.6	gi|433593344|ref|YP_007296085.1|	-	0.0085	16.1	1.1	0.018	15.0	1.1	1.5	1	0	0	1	1	1	1	FlxA-like	protein
CENP-Q	PF13094.6	gi|433593344|ref|YP_007296085.1|	-	0.015	15.5	5.6	0.015	15.5	5.6	1.9	2	0	0	2	2	2	0	CENP-Q,	a	CENPA-CAD	centromere	complex	subunit
ZapB	PF06005.12	gi|433593344|ref|YP_007296085.1|	-	0.03	14.8	3.8	0.08	13.4	3.8	1.7	1	0	0	1	1	1	0	Cell	division	protein	ZapB
DUF2205	PF10224.9	gi|433593344|ref|YP_007296085.1|	-	0.095	12.7	2.7	0.21	11.6	2.7	1.5	1	0	0	1	1	1	0	Short	coiled-coil	protein
Prefoldin	PF02996.17	gi|433593344|ref|YP_007296085.1|	-	0.11	12.4	1.6	0.26	11.2	1.6	1.6	1	0	0	1	1	1	0	Prefoldin	subunit
DUF1664	PF07889.12	gi|433593344|ref|YP_007296085.1|	-	0.14	12.2	0.6	0.27	11.3	0.6	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1664)
Cep57_CLD_2	PF14197.6	gi|433593344|ref|YP_007296085.1|	-	0.19	11.8	7.0	0.53	10.4	7.0	1.7	1	0	0	1	1	1	0	Centrosome	localisation	domain	of	PPC89
FlaC_arch	PF05377.11	gi|433593344|ref|YP_007296085.1|	-	0.21	12.0	0.5	0.45	10.9	0.5	1.5	1	0	0	1	1	1	0	Flagella	accessory	protein	C	(FlaC)
ATG16	PF08614.11	gi|433593344|ref|YP_007296085.1|	-	0.4	10.9	12.7	0.085	13.1	6.9	2.1	2	0	0	2	2	2	0	Autophagy	protein	16	(ATG16)
DUF3450	PF11932.8	gi|433593344|ref|YP_007296085.1|	-	0.41	9.9	6.6	0.069	12.4	2.2	1.9	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3450)
DivIC	PF04977.15	gi|433593344|ref|YP_007296085.1|	-	0.45	10.3	6.6	0.07	12.9	1.9	2.0	2	0	0	2	2	2	0	Septum	formation	initiator
TMCO5	PF14992.6	gi|433593344|ref|YP_007296085.1|	-	3.2	7.2	8.1	11	5.6	8.1	1.8	1	1	0	1	1	1	0	TMCO5	family
SlyX	PF04102.12	gi|433593344|ref|YP_007296085.1|	-	3.8	8.2	8.6	0.59	10.8	3.4	2.4	3	0	0	3	3	3	0	SlyX
TrwB_AAD_bind	PF10412.9	gi|433593345|ref|YP_007296086.1|	-	3.1e-09	36.2	0.0	6.4e-05	22.0	0.0	2.2	2	0	0	2	2	2	2	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
TraG-D_C	PF12696.7	gi|433593345|ref|YP_007296086.1|	-	4.2e-06	26.8	0.0	1.1e-05	25.4	0.0	1.7	1	0	0	1	1	1	1	TraM	recognition	site	of	TraD	and	TraG
T4SS-DNA_transf	PF02534.14	gi|433593345|ref|YP_007296086.1|	-	1.3e-05	24.2	0.0	0.00044	19.2	0.1	2.1	2	0	0	2	2	2	1	Type	IV	secretory	system	Conjugative	DNA	transfer
Pox_D5	PF03288.16	gi|433593345|ref|YP_007296086.1|	-	0.015	15.7	0.0	0.031	14.8	0.0	1.5	1	0	0	1	1	1	0	Poxvirus	D5	protein-like
DUF87	PF01935.17	gi|433593345|ref|YP_007296086.1|	-	0.038	14.1	0.0	0.13	12.4	0.0	2.0	1	1	0	1	1	1	0	Helicase	HerA,	central	domain
FtsK_SpoIIIE	PF01580.18	gi|433593345|ref|YP_007296086.1|	-	0.042	13.2	0.0	0.64	9.3	0.0	2.4	2	0	0	2	2	2	0	FtsK/SpoIIIE	family
HHH_6	PF14579.6	gi|433593345|ref|YP_007296086.1|	-	0.048	13.9	0.0	0.099	12.9	0.0	1.5	1	0	0	1	1	1	0	Helix-hairpin-helix	motif
NACHT	PF05729.12	gi|433593345|ref|YP_007296086.1|	-	0.065	13.1	0.0	0.25	11.3	0.0	1.9	2	0	0	2	2	2	0	NACHT	domain
AAA_22	PF13401.6	gi|433593345|ref|YP_007296086.1|	-	0.11	12.8	0.0	4.3	7.6	0.0	2.8	2	1	0	2	2	2	0	AAA	domain
TAT_signal	PF10518.9	gi|433593346|ref|YP_007296087.1|	-	0.034	14.0	1.7	0.058	13.3	1.7	1.4	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
DUF3591	PF12157.8	gi|433593346|ref|YP_007296087.1|	-	0.091	11.4	0.0	0.12	11.0	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3591)
TAT_signal	PF10518.9	gi|433593347|ref|YP_007296088.1|	-	0.15	11.9	0.5	0.29	11.1	0.5	1.5	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
HTH_33	PF13592.6	gi|433593348|ref|YP_007296089.1|	-	6.7e-23	80.1	1.7	2.3e-21	75.2	0.0	2.9	3	0	0	3	3	3	1	Winged	helix-turn	helix
HTH_32	PF13565.6	gi|433593348|ref|YP_007296089.1|	-	1.3e-12	48.2	5.1	5.7e-12	46.1	0.3	2.7	3	0	0	3	3	3	1	Homeodomain-like	domain
HTH_28	PF13518.6	gi|433593348|ref|YP_007296089.1|	-	9.5e-11	41.7	0.6	9.5e-11	41.7	0.6	1.8	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_29	PF13551.6	gi|433593348|ref|YP_007296089.1|	-	1.4e-10	41.1	0.7	6.6e-10	38.9	0.2	2.0	2	0	0	2	2	2	1	Winged	helix-turn	helix
HTH_23	PF13384.6	gi|433593348|ref|YP_007296089.1|	-	1.3e-07	31.1	0.3	3e-07	30.1	0.3	1.6	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_Tnp_IS630	PF01710.16	gi|433593348|ref|YP_007296089.1|	-	0.00034	20.6	0.3	0.0006	19.8	0.3	1.5	1	0	0	1	1	1	1	Transposase
Sigma70_ECF	PF07638.11	gi|433593348|ref|YP_007296089.1|	-	0.00092	19.1	0.1	0.0016	18.4	0.1	1.5	1	1	0	1	1	1	1	ECF	sigma	factor
Terminase_5	PF06056.12	gi|433593348|ref|YP_007296089.1|	-	0.0032	17.3	0.2	0.0064	16.4	0.2	1.6	1	0	0	1	1	1	1	Putative	ATPase	subunit	of	terminase	(gpP-like)
HTH_36	PF13730.6	gi|433593348|ref|YP_007296089.1|	-	0.0037	17.2	0.1	0.013	15.5	0.1	1.9	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_11	PF08279.12	gi|433593348|ref|YP_007296089.1|	-	0.011	15.6	0.2	0.031	14.2	0.1	1.8	2	0	0	2	2	2	0	HTH	domain
SMC_ScpB	PF04079.16	gi|433593348|ref|YP_007296089.1|	-	0.014	15.0	0.1	0.026	14.1	0.1	1.5	1	0	0	1	1	1	0	Segregation	and	condensation	complex	subunit	ScpB
HTH_Tnp_1_2	PF13022.6	gi|433593348|ref|YP_007296089.1|	-	0.018	15.2	1.0	0.029	14.5	0.6	1.6	1	1	0	1	1	1	0	Helix-turn-helix	of	insertion	element	transposase
HTH_psq	PF05225.16	gi|433593348|ref|YP_007296089.1|	-	0.019	14.7	0.1	0.053	13.3	0.1	1.9	1	1	0	1	1	1	0	helix-turn-helix,	Psq	domain
HTH_Tnp_4	PF13613.6	gi|433593348|ref|YP_007296089.1|	-	0.065	13.0	0.0	0.13	12.0	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix	of	DDE	superfamily	endonuclease
HTH_38	PF13936.6	gi|433593348|ref|YP_007296089.1|	-	0.074	12.8	0.1	0.26	11.1	0.0	2.0	2	0	0	2	2	2	0	Helix-turn-helix	domain
PadR	PF03551.14	gi|433593348|ref|YP_007296089.1|	-	0.078	13.0	0.2	0.17	11.9	0.2	1.5	1	0	0	1	1	1	0	Transcriptional	regulator	PadR-like	family
HTH_Tnp_Tc3_2	PF01498.18	gi|433593348|ref|YP_007296089.1|	-	0.08	13.2	0.5	0.5	10.7	0.0	2.5	3	1	1	4	4	4	0	Transposase
MarR	PF01047.22	gi|433593348|ref|YP_007296089.1|	-	0.087	12.8	0.0	0.17	11.9	0.0	1.5	1	0	0	1	1	1	0	MarR	family
DUF1778	PF08681.11	gi|433593348|ref|YP_007296089.1|	-	0.096	12.6	0.6	1.3	9.0	0.1	2.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1778)
TrmB	PF01978.19	gi|433593348|ref|YP_007296089.1|	-	0.1	12.5	0.0	0.23	11.4	0.0	1.6	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
DUF488	PF04343.13	gi|433593348|ref|YP_007296089.1|	-	0.17	12.5	2.4	0.25	11.9	0.4	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function,	DUF488
HTH_3	PF01381.22	gi|433593348|ref|YP_007296089.1|	-	0.26	11.4	4.6	1.6	8.8	0.0	3.6	4	1	1	5	5	4	0	Helix-turn-helix
YolD	PF08863.10	gi|433593348|ref|YP_007296089.1|	-	0.67	10.0	4.5	4.8	7.3	0.4	3.0	3	0	0	3	3	3	0	YolD-like	protein
DDE_3	PF13358.6	gi|433593349|ref|YP_007296090.1|	-	2e-36	124.9	0.0	2.3e-36	124.7	0.0	1.0	1	0	0	1	1	1	1	DDE	superfamily	endonuclease
PAPS_reduct	PF01507.19	gi|433593350|ref|YP_007296091.1|	-	4.2e-15	56.2	0.0	7.6e-05	22.8	0.0	3.1	3	0	0	3	3	3	3	Phosphoadenosine	phosphosulfate	reductase	family
PP-binding_2	PF14573.6	gi|433593350|ref|YP_007296091.1|	-	0.041	14.1	0.1	0.1	12.9	0.1	1.6	1	0	0	1	1	1	0	Acyl-carrier
Diphthami_syn_2	PF01902.17	gi|433593350|ref|YP_007296091.1|	-	0.058	12.9	0.0	0.12	11.8	0.0	1.5	2	0	0	2	2	2	0	Diphthamide	synthase
ATP_bind_3	PF01171.20	gi|433593350|ref|YP_007296091.1|	-	0.097	12.4	0.0	0.17	11.6	0.0	1.3	1	0	0	1	1	1	0	PP-loop	family
UDPG_MGDP_dh_N	PF03721.14	gi|433593351|ref|YP_007296092.1|	-	8e-57	191.8	0.5	9.6e-56	188.3	0.1	2.1	2	0	0	2	2	2	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
UDPG_MGDP_dh	PF00984.19	gi|433593351|ref|YP_007296092.1|	-	2.3e-35	120.7	0.1	4.3e-35	119.8	0.1	1.5	1	0	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	central	domain
UDPG_MGDP_dh_C	PF03720.15	gi|433593351|ref|YP_007296092.1|	-	3.9e-27	94.7	0.3	2.4e-26	92.2	0.0	2.3	2	0	0	2	2	2	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	UDP	binding	domain
3HCDH_N	PF02737.18	gi|433593351|ref|YP_007296092.1|	-	0.00035	20.5	0.0	0.0011	18.9	0.0	1.9	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
NAD_Gly3P_dh_N	PF01210.23	gi|433593351|ref|YP_007296092.1|	-	0.0056	16.7	0.0	0.015	15.3	0.0	1.9	1	1	0	1	1	1	1	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
ApbA	PF02558.16	gi|433593351|ref|YP_007296092.1|	-	0.02	14.5	0.0	0.035	13.8	0.0	1.5	1	0	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
Pyr_redox_2	PF07992.14	gi|433593351|ref|YP_007296092.1|	-	0.039	13.2	0.0	0.07	12.4	0.0	1.4	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|433593351|ref|YP_007296092.1|	-	0.054	14.1	0.2	0.47	11.1	0.1	2.5	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
WYL	PF13280.6	gi|433593352|ref|YP_007296093.1|	-	0.00038	20.5	0.0	0.00074	19.6	0.0	1.4	1	1	0	1	1	1	1	WYL	domain
NTP_transferase	PF00483.23	gi|433593353|ref|YP_007296094.1|	-	8.7e-43	146.7	0.0	1e-42	146.5	0.0	1.0	1	0	0	1	1	1	1	Nucleotidyl	transferase
NTP_transf_3	PF12804.7	gi|433593353|ref|YP_007296094.1|	-	9.2e-16	58.6	0.0	1e-15	58.4	0.0	1.1	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
IspD	PF01128.19	gi|433593353|ref|YP_007296094.1|	-	6.7e-06	26.0	0.0	1.3e-05	25.0	0.0	1.7	1	1	0	1	1	1	1	2-C-methyl-D-erythritol	4-phosphate	cytidylyltransferase
Glycos_transf_2	PF00535.26	gi|433593353|ref|YP_007296094.1|	-	0.012	15.5	0.1	0.016	15.0	0.1	1.3	1	0	0	1	1	1	0	Glycosyl	transferase	family	2
Polysacc_synt	PF01943.17	gi|433593354|ref|YP_007296095.1|	-	8.5e-20	71.3	17.0	8.5e-20	71.3	17.0	2.3	2	1	0	2	2	2	1	Polysaccharide	biosynthesis	protein
Polysacc_synt_C	PF14667.6	gi|433593354|ref|YP_007296095.1|	-	4.3e-18	65.8	21.4	1.5e-17	64.0	11.3	4.2	4	1	1	5	5	5	3	Polysaccharide	biosynthesis	C-terminal	domain
Polysacc_synt_3	PF13440.6	gi|433593354|ref|YP_007296095.1|	-	4.3e-11	42.6	13.4	4.3e-11	42.6	13.4	1.8	2	0	0	2	2	2	1	Polysaccharide	biosynthesis	protein
MurJ	PF03023.14	gi|433593354|ref|YP_007296095.1|	-	0.00019	20.2	20.6	0.0045	15.7	20.5	2.8	1	1	0	1	1	1	1	Lipid	II	flippase	MurJ
FAD_binding_4	PF01565.23	gi|433593355|ref|YP_007296096.1|	-	1.1e-14	54.4	0.0	1.5e-14	53.9	0.0	1.2	1	0	0	1	1	1	1	FAD	binding	domain
Elong-fact-P_C	PF09285.11	gi|433593355|ref|YP_007296096.1|	-	0.16	11.8	0.0	0.35	10.6	0.0	1.6	1	0	0	1	1	1	0	Elongation	factor	P,	C-terminal
PS_pyruv_trans	PF04230.13	gi|433593356|ref|YP_007296097.1|	-	4.1e-29	102.4	0.1	5.3e-29	102.0	0.1	1.2	1	0	0	1	1	1	1	Polysaccharide	pyruvyl	transferase
MipZ	PF09140.11	gi|433593356|ref|YP_007296097.1|	-	0.073	12.3	0.0	0.15	11.3	0.0	1.5	1	0	0	1	1	1	0	ATPase	MipZ
Fe-ADH	PF00465.19	gi|433593356|ref|YP_007296097.1|	-	0.24	10.2	0.0	0.86	8.4	0.0	1.8	2	0	0	2	2	2	0	Iron-containing	alcohol	dehydrogenase
Glycos_transf_2	PF00535.26	gi|433593357|ref|YP_007296098.1|	-	7.2e-28	97.5	0.1	1.3e-27	96.7	0.1	1.4	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|433593357|ref|YP_007296098.1|	-	8.1e-14	52.1	0.0	1.6e-13	51.1	0.0	1.5	1	1	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_2	PF10111.9	gi|433593357|ref|YP_007296098.1|	-	1.1e-07	31.6	0.0	1.7e-07	31.0	0.0	1.3	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
DDE_Tnp_IS66	PF03050.14	gi|433593358|ref|YP_007296099.1|	-	2.7e-49	168.2	0.1	2.7e-49	168.2	0.1	2.1	2	0	0	2	2	2	1	Transposase	IS66	family
SlyX	PF04102.12	gi|433593358|ref|YP_007296099.1|	-	7.4e-09	36.1	7.8	2e-08	34.7	7.8	1.8	1	0	0	1	1	1	1	SlyX
zf-IS66	PF13005.7	gi|433593358|ref|YP_007296099.1|	-	9e-06	26.0	5.0	9e-06	26.0	5.0	2.7	3	0	0	3	3	1	1	zinc-finger	binding	domain	of	transposase	IS66
MscS_porin	PF12795.7	gi|433593358|ref|YP_007296099.1|	-	9.7e-06	25.3	6.6	1.7e-05	24.5	6.6	1.3	1	0	0	1	1	1	1	Mechanosensitive	ion	channel	porin	domain
DUF16	PF01519.16	gi|433593358|ref|YP_007296099.1|	-	0.00055	20.4	7.2	0.0011	19.4	7.2	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF16
UPF0242	PF06785.11	gi|433593358|ref|YP_007296099.1|	-	0.0015	18.7	13.2	0.0025	17.9	13.2	1.3	1	0	0	1	1	1	1	Uncharacterised	protein	family	(UPF0242)	N-terminus
HSBP1	PF06825.12	gi|433593358|ref|YP_007296099.1|	-	0.0024	17.7	6.2	0.016	15.0	0.8	2.6	1	1	0	2	2	2	1	Heat	shock	factor	binding	protein	1
SKA1	PF07160.12	gi|433593358|ref|YP_007296099.1|	-	0.0035	17.2	1.0	0.0057	16.5	1.0	1.3	1	0	0	1	1	1	1	Spindle	and	kinetochore-associated	protein	1
Herpes_UL14	PF03580.14	gi|433593358|ref|YP_007296099.1|	-	0.0048	17.2	1.4	0.0088	16.3	1.4	1.4	1	0	0	1	1	1	1	Herpesvirus	UL14-like	protein
Atg14	PF10186.9	gi|433593358|ref|YP_007296099.1|	-	0.018	14.2	7.6	0.028	13.5	7.6	1.2	1	0	0	1	1	1	0	Vacuolar	sorting	38	and	autophagy-related	subunit	14
DDE_Tnp_IS240	PF13610.6	gi|433593358|ref|YP_007296099.1|	-	0.019	15.2	2.0	0.087	13.1	0.0	2.4	2	1	0	2	2	2	0	DDE	domain
YkyA	PF10368.9	gi|433593358|ref|YP_007296099.1|	-	0.021	14.5	9.5	0.035	13.8	9.5	1.2	1	0	0	1	1	1	0	Putative	cell-wall	binding	lipoprotein
HemX	PF04375.14	gi|433593358|ref|YP_007296099.1|	-	0.024	13.9	4.1	0.038	13.3	4.1	1.2	1	0	0	1	1	1	0	HemX,	putative	uroporphyrinogen-III	C-methyltransferase
PKcGMP_CC	PF16808.5	gi|433593358|ref|YP_007296099.1|	-	0.026	14.4	26.3	0.13	12.1	6.8	2.6	2	0	0	2	2	2	0	Coiled-coil	N-terminus	of	cGMP-dependent	protein	kinase
Fmp27_WPPW	PF10359.9	gi|433593358|ref|YP_007296099.1|	-	0.031	13.1	5.6	0.049	12.5	5.6	1.2	1	0	0	1	1	1	0	RNA	pol	II	promoter	Fmp27	protein	domain
Exonuc_VII_L	PF02601.15	gi|433593358|ref|YP_007296099.1|	-	0.036	13.6	3.6	0.064	12.8	3.6	1.3	1	0	0	1	1	1	0	Exonuclease	VII,	large	subunit
ATG16	PF08614.11	gi|433593358|ref|YP_007296099.1|	-	0.051	13.8	10.6	0.1	12.8	10.6	1.5	1	0	0	1	1	1	0	Autophagy	protein	16	(ATG16)
AAA_13	PF13166.6	gi|433593358|ref|YP_007296099.1|	-	0.061	12.0	8.2	0.088	11.4	8.2	1.1	1	0	0	1	1	1	0	AAA	domain
DZR	PF12773.7	gi|433593358|ref|YP_007296099.1|	-	0.099	12.7	2.7	0.25	11.4	2.7	1.6	1	0	0	1	1	1	0	Double	zinc	ribbon
GAS	PF13851.6	gi|433593358|ref|YP_007296099.1|	-	0.11	11.9	9.7	0.2	11.0	9.7	1.3	1	0	0	1	1	1	0	Growth-arrest	specific	micro-tubule	binding
Cortex-I_coil	PF09304.10	gi|433593358|ref|YP_007296099.1|	-	0.11	12.7	10.5	0.23	11.7	10.5	1.5	1	0	0	1	1	1	0	Cortexillin	I,	coiled	coil
Phage_GPO	PF05929.11	gi|433593358|ref|YP_007296099.1|	-	0.11	12.1	3.1	0.18	11.4	3.1	1.3	1	0	0	1	1	1	0	Phage	capsid	scaffolding	protein	(GPO)	serine	peptidase
DUF3552	PF12072.8	gi|433593358|ref|YP_007296099.1|	-	0.11	11.9	15.6	0.2	11.1	15.6	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3552)
Terminase_4	PF05119.12	gi|433593358|ref|YP_007296099.1|	-	0.14	12.6	0.7	0.73	10.3	0.2	2.3	2	0	0	2	2	2	0	Phage	terminase,	small	subunit
DUF1664	PF07889.12	gi|433593358|ref|YP_007296099.1|	-	0.15	12.1	5.3	0.3	11.1	5.3	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1664)
Spc7	PF08317.11	gi|433593358|ref|YP_007296099.1|	-	0.15	10.9	11.6	0.17	10.7	10.5	1.6	2	0	0	2	2	1	0	Spc7	kinetochore	protein
FliD_C	PF07195.12	gi|433593358|ref|YP_007296099.1|	-	0.17	11.3	3.8	0.26	10.7	3.8	1.3	1	0	0	1	1	1	0	Flagellar	hook-associated	protein	2	C-terminus
TMF_DNA_bd	PF12329.8	gi|433593358|ref|YP_007296099.1|	-	0.17	11.9	12.6	0.34	10.9	12.6	1.5	1	0	0	1	1	1	0	TATA	element	modulatory	factor	1	DNA	binding
Fib_alpha	PF08702.10	gi|433593358|ref|YP_007296099.1|	-	0.18	12.0	5.5	0.39	10.9	5.5	1.5	1	0	0	1	1	1	0	Fibrinogen	alpha/beta	chain	family
CSN5_C	PF18323.1	gi|433593358|ref|YP_007296099.1|	-	0.19	12.7	0.7	5.4	8.0	0.8	2.6	2	0	0	2	2	2	0	Cop9	signalosome	subunit	5	C-terminal	domain
FAM76	PF16046.5	gi|433593358|ref|YP_007296099.1|	-	0.23	10.8	4.0	0.37	10.1	4.0	1.3	1	0	0	1	1	1	0	FAM76	protein
WASH_WAHD	PF11945.8	gi|433593358|ref|YP_007296099.1|	-	0.27	10.7	7.2	0.39	10.2	7.2	1.2	1	0	0	1	1	1	0	WAHD	domain	of	WASH	complex
DUF724	PF05266.14	gi|433593358|ref|YP_007296099.1|	-	0.27	11.0	6.4	0.46	10.3	6.4	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF724)
Allexi_40kDa	PF05549.11	gi|433593358|ref|YP_007296099.1|	-	0.32	10.5	2.8	0.55	9.7	2.8	1.3	1	0	0	1	1	1	0	Allexivirus	40kDa	protein
DUF3584	PF12128.8	gi|433593358|ref|YP_007296099.1|	-	0.36	8.3	7.2	0.51	7.8	7.2	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3584)
TMPIT	PF07851.13	gi|433593358|ref|YP_007296099.1|	-	0.36	10.0	4.1	0.57	9.4	4.1	1.2	1	0	0	1	1	1	0	TMPIT-like	protein
Flagellin_C	PF00700.21	gi|433593358|ref|YP_007296099.1|	-	0.39	11.1	1.2	0.79	10.1	1.2	1.4	1	0	0	1	1	1	0	Bacterial	flagellin	C-terminal	helical	region
ACCA	PF03255.14	gi|433593358|ref|YP_007296099.1|	-	0.5	10.2	5.0	1.3	8.9	5.0	1.7	1	0	0	1	1	1	0	Acetyl	co-enzyme	A	carboxylase	carboxyltransferase	alpha	subunit
DUF1910	PF08928.10	gi|433593358|ref|YP_007296099.1|	-	0.66	10.0	3.8	1.7	8.6	3.8	1.7	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1910)
LUC7	PF03194.15	gi|433593358|ref|YP_007296099.1|	-	0.69	9.5	7.5	1.4	8.5	7.5	1.4	1	0	0	1	1	1	0	LUC7	N_terminus
zf-FPG_IleRS	PF06827.14	gi|433593358|ref|YP_007296099.1|	-	0.81	9.6	4.3	8.7	6.3	0.2	3.3	3	0	0	3	3	3	0	Zinc	finger	found	in	FPG	and	IleRS
ExsD	PF16806.5	gi|433593358|ref|YP_007296099.1|	-	1	9.3	5.1	14	5.6	4.3	2.1	2	0	0	2	2	2	0	Antiactivator	protein	ExsD
DUF4407	PF14362.6	gi|433593358|ref|YP_007296099.1|	-	1	8.7	3.5	1.7	7.9	3.5	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4407)
RmuC	PF02646.16	gi|433593358|ref|YP_007296099.1|	-	1.1	8.4	7.0	1.7	7.7	7.0	1.2	1	0	0	1	1	1	0	RmuC	family
FemAB	PF02388.16	gi|433593358|ref|YP_007296099.1|	-	1.1	8.0	6.1	1.7	7.4	6.1	1.1	1	0	0	1	1	1	0	FemAB	family
Fzo_mitofusin	PF04799.13	gi|433593358|ref|YP_007296099.1|	-	1.4	8.4	6.1	2.5	7.6	6.1	1.3	1	0	0	1	1	1	0	fzo-like	conserved	region
Zn-ribbon_8	PF09723.10	gi|433593358|ref|YP_007296099.1|	-	1.6	8.9	5.5	14	5.9	0.8	2.7	2	0	0	2	2	2	0	Zinc	ribbon	domain
DUF1465	PF07323.12	gi|433593358|ref|YP_007296099.1|	-	1.8	8.4	6.9	1.4	8.7	3.5	2.5	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF1465)
DUF3450	PF11932.8	gi|433593358|ref|YP_007296099.1|	-	2.1	7.6	15.5	1.5	8.1	10.5	2.6	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF3450)
DUF2203	PF09969.9	gi|433593358|ref|YP_007296099.1|	-	2.1	9.1	8.1	5.8	7.7	6.4	2.2	2	0	0	2	2	2	0	Uncharacterized	conserved	protein	(DUF2203)
V_ATPase_I	PF01496.19	gi|433593358|ref|YP_007296099.1|	-	2.3	6.1	4.9	3.2	5.6	4.9	1.1	1	0	0	1	1	1	0	V-type	ATPase	116kDa	subunit	family
MPS2	PF17060.5	gi|433593358|ref|YP_007296099.1|	-	2.4	7.4	6.1	3.7	6.7	6.1	1.2	1	0	0	1	1	1	0	Monopolar	spindle	protein	2
Kre28	PF17097.5	gi|433593358|ref|YP_007296099.1|	-	4	6.3	12.8	0.37	9.7	8.3	1.4	2	0	0	2	2	1	0	Spindle	pole	body	component
ABC_tran_CTD	PF16326.5	gi|433593358|ref|YP_007296099.1|	-	6.3	7.1	22.3	1	9.7	16.9	2.3	2	0	0	2	2	2	0	ABC	transporter	C-terminal	domain
DLP_helical	PF18709.1	gi|433593358|ref|YP_007296099.1|	-	6.7	5.8	8.2	12	5.0	8.2	1.3	1	0	0	1	1	1	0	Dynamin-like	helical	domain
DUF5359	PF17313.2	gi|433593359|ref|YP_007296100.1|	-	0.12	12.4	0.0	0.15	12.1	0.0	1.2	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5359)
Glycos_transf_1	PF00534.20	gi|433593360|ref|YP_007296101.1|	-	5.4e-19	68.4	0.0	1.3e-18	67.2	0.0	1.6	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|433593360|ref|YP_007296101.1|	-	3.7e-16	59.8	0.0	8.5e-16	58.6	0.0	1.6	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_trans_1_2	PF13524.6	gi|433593360|ref|YP_007296101.1|	-	0.025	15.0	0.1	0.066	13.6	0.0	1.7	2	0	0	2	2	2	0	Glycosyl	transferases	group	1
DUF2206	PF09971.9	gi|433593361|ref|YP_007296102.1|	-	9.1e-86	287.9	3.8	9.1e-86	287.9	3.8	2.8	3	0	0	3	3	3	1	Predicted	membrane	protein	(DUF2206)
PMT_2	PF13231.6	gi|433593361|ref|YP_007296102.1|	-	0.00016	21.9	10.1	0.00016	21.9	10.1	4.8	3	1	3	6	6	6	1	Dolichyl-phosphate-mannose-protein	mannosyltransferase
UCR_UQCRX_QCR9	PF05365.12	gi|433593361|ref|YP_007296102.1|	-	0.34	10.9	1.9	4.7	7.2	0.0	3.4	3	0	0	3	3	3	0	Ubiquinol-cytochrome	C	reductase,	UQCRX/QCR9	like
LisH_2	PF16045.5	gi|433593361|ref|YP_007296102.1|	-	1.3	8.1	5.4	7.4	5.7	0.3	3.4	3	0	0	3	3	3	0	LisH
Glycos_transf_1	PF00534.20	gi|433593362|ref|YP_007296103.1|	-	7.2e-20	71.2	0.0	1.4e-19	70.3	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|433593362|ref|YP_007296103.1|	-	2e-16	60.7	0.0	3.7e-16	59.8	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|433593362|ref|YP_007296103.1|	-	3.2e-16	59.8	0.1	4.7e-16	59.3	0.1	1.2	1	0	0	1	1	1	1	Glycosyltransferase	Family	4
Glyco_trans_4_4	PF13579.6	gi|433593362|ref|YP_007296103.1|	-	4.5e-15	56.5	0.0	7.4e-15	55.7	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferase	4-like	domain
Glyco_trans_4_2	PF13477.6	gi|433593362|ref|YP_007296103.1|	-	1.3e-05	25.3	0.0	3.3e-05	23.9	0.0	1.7	2	0	0	2	2	2	1	Glycosyl	transferase	4-like
DUF1949	PF09186.11	gi|433593362|ref|YP_007296103.1|	-	0.017	15.0	1.6	2.5	8.1	0.0	3.5	4	0	0	4	4	4	0	Domain	of	unknown	function	(DUF1949)
CLP1_P	PF16575.5	gi|433593362|ref|YP_007296103.1|	-	0.085	12.6	0.0	0.15	11.8	0.0	1.3	1	0	0	1	1	1	0	mRNA	cleavage	and	polyadenylation	factor	CLP1	P-loop
Glycos_transf_1	PF00534.20	gi|433593363|ref|YP_007296104.1|	-	7.7e-45	152.5	0.0	1.2e-44	151.9	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|433593363|ref|YP_007296104.1|	-	8.8e-35	120.1	0.2	2e-34	118.9	0.0	1.7	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|433593363|ref|YP_007296104.1|	-	2.8e-31	108.8	0.1	6.1e-31	107.7	0.2	1.5	2	0	0	2	2	2	1	Glycosyltransferase	Family	4
Glyco_trans_4_4	PF13579.6	gi|433593363|ref|YP_007296104.1|	-	5.1e-19	69.3	0.0	1.1e-18	68.2	0.0	1.6	1	0	0	1	1	1	1	Glycosyl	transferase	4-like	domain
Glyco_trans_1_2	PF13524.6	gi|433593363|ref|YP_007296104.1|	-	1.6e-11	44.5	0.0	5.1e-11	42.8	0.0	1.9	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_trans_4_2	PF13477.6	gi|433593363|ref|YP_007296104.1|	-	4.1e-09	36.6	0.0	6e-09	36.1	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferase	4-like
Glyco_transf_5	PF08323.11	gi|433593363|ref|YP_007296104.1|	-	0.014	15.1	0.1	0.11	12.1	0.0	2.0	1	1	1	2	2	2	0	Starch	synthase	catalytic	domain
F420_oxidored	PF03807.17	gi|433593363|ref|YP_007296104.1|	-	0.067	13.8	0.0	1	10.0	0.0	2.6	3	0	0	3	3	3	0	NADP	oxidoreductase	coenzyme	F420-dependent
Sulfatase	PF00884.23	gi|433593364|ref|YP_007296105.1|	-	2e-45	155.5	0.3	2.7e-45	155.1	0.3	1.1	1	0	0	1	1	1	1	Sulfatase
Phosphodiest	PF01663.22	gi|433593364|ref|YP_007296105.1|	-	3.5e-09	36.7	0.1	0.00035	20.3	0.0	2.3	2	0	0	2	2	2	2	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
DUF229	PF02995.17	gi|433593364|ref|YP_007296105.1|	-	0.00019	20.2	0.0	0.00059	18.6	0.0	1.7	2	1	0	2	2	2	1	Protein	of	unknown	function	(DUF229)
Metalloenzyme	PF01676.18	gi|433593364|ref|YP_007296105.1|	-	0.00031	20.2	0.1	1	8.7	0.0	3.1	3	0	0	3	3	3	2	Metalloenzyme	superfamily
PG_binding_2	PF08823.11	gi|433593364|ref|YP_007296105.1|	-	0.12	12.7	0.2	1.2	9.5	0.1	2.8	2	1	0	2	2	2	0	Putative	peptidoglycan	binding	domain
Glycos_transf_1	PF00534.20	gi|433593365|ref|YP_007296106.1|	-	4.6e-31	107.7	0.0	6.6e-31	107.1	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|433593365|ref|YP_007296106.1|	-	3.8e-27	95.3	0.0	1.4e-26	93.5	0.0	1.9	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|433593365|ref|YP_007296106.1|	-	8.4e-23	81.2	1.3	8.4e-23	81.2	1.3	2.0	2	1	0	2	2	2	1	Glycosyltransferase	Family	4
Glyco_trans_4_4	PF13579.6	gi|433593365|ref|YP_007296106.1|	-	1.1e-18	68.1	3.8	1.1e-18	68.1	3.8	2.1	2	1	1	3	3	3	1	Glycosyl	transferase	4-like	domain
Glyco_trans_1_2	PF13524.6	gi|433593365|ref|YP_007296106.1|	-	0.02	15.3	0.1	0.41	11.1	0.0	2.6	2	1	0	2	2	2	0	Glycosyl	transferases	group	1
OrfB_IS605	PF01385.19	gi|433593366|ref|YP_007296107.1|	-	4e-31	107.7	0.3	7.4e-31	106.9	0.3	1.4	1	0	0	1	1	1	1	Probable	transposase
OrfB_Zn_ribbon	PF07282.11	gi|433593366|ref|YP_007296107.1|	-	7.6e-17	61.0	0.1	1.4e-16	60.1	0.1	1.5	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
Lar_restr_allev	PF14354.6	gi|433593366|ref|YP_007296107.1|	-	0.077	13.4	0.4	0.22	11.9	0.4	1.7	1	0	0	1	1	1	0	Restriction	alleviation	protein	Lar
HATPase_c_3	PF13589.6	gi|433593368|ref|YP_007296109.1|	-	0.1	12.4	0.0	0.12	12.2	0.0	1.1	1	0	0	1	1	1	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
MCM	PF00493.23	gi|433593370|ref|YP_007296111.1|	-	9.2e-76	253.9	0.0	1.4e-75	253.2	0.0	1.3	1	0	0	1	1	1	1	MCM	P-loop	domain
MCM_OB	PF17207.3	gi|433593370|ref|YP_007296111.1|	-	2e-25	89.1	0.2	3.8e-25	88.2	0.2	1.4	1	0	0	1	1	1	1	MCM	OB	domain
MCM_lid	PF17855.1	gi|433593370|ref|YP_007296111.1|	-	1.6e-21	76.5	2.8	4.2e-21	75.2	2.8	1.8	1	0	0	1	1	1	1	MCM	AAA-lid	domain
MCM_N	PF14551.6	gi|433593370|ref|YP_007296111.1|	-	1.7e-10	41.4	0.6	6.2e-10	39.6	0.6	1.9	1	0	0	1	1	1	1	MCM	N-terminal	domain
Mg_chelatase	PF01078.21	gi|433593370|ref|YP_007296111.1|	-	2.6e-10	40.0	0.0	2.1e-05	24.0	0.0	2.5	1	1	1	2	2	2	2	Magnesium	chelatase,	subunit	ChlI
AAA_5	PF07728.14	gi|433593370|ref|YP_007296111.1|	-	7.4e-09	35.7	0.0	2.1e-08	34.2	0.0	1.9	1	1	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
AAA_16	PF13191.6	gi|433593370|ref|YP_007296111.1|	-	4.6e-05	23.9	2.3	0.00098	19.5	0.7	2.9	1	1	0	1	1	1	1	AAA	ATPase	domain
Sigma54_activat	PF00158.26	gi|433593370|ref|YP_007296111.1|	-	0.00056	19.6	0.0	0.0024	17.6	0.0	1.9	1	1	0	1	1	1	1	Sigma-54	interaction	domain
AAA	PF00004.29	gi|433593370|ref|YP_007296111.1|	-	0.0021	18.5	0.1	0.0084	16.5	0.0	2.1	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_22	PF13401.6	gi|433593370|ref|YP_007296111.1|	-	0.0023	18.2	0.1	0.018	15.3	0.0	2.4	2	0	0	2	2	2	1	AAA	domain
RuvB_N	PF05496.12	gi|433593370|ref|YP_007296111.1|	-	0.0029	17.4	0.0	0.03	14.0	0.0	2.3	1	1	0	1	1	1	1	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
FtsK_SpoIIIE	PF01580.18	gi|433593370|ref|YP_007296111.1|	-	0.0084	15.5	0.6	0.16	11.3	0.0	2.4	2	0	0	2	2	2	1	FtsK/SpoIIIE	family
AAA_18	PF13238.6	gi|433593370|ref|YP_007296111.1|	-	0.0093	16.5	3.6	0.087	13.4	0.0	3.5	3	1	1	4	4	4	1	AAA	domain
AAA_29	PF13555.6	gi|433593370|ref|YP_007296111.1|	-	0.015	15.1	0.0	0.04	13.7	0.0	1.7	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_30	PF13604.6	gi|433593370|ref|YP_007296111.1|	-	0.032	13.9	1.1	0.06	13.1	0.2	1.9	2	0	0	2	2	2	0	AAA	domain
ABC_tran	PF00005.27	gi|433593370|ref|YP_007296111.1|	-	0.038	14.5	0.1	0.32	11.5	0.0	2.4	2	1	0	2	2	2	0	ABC	transporter
NACHT	PF05729.12	gi|433593370|ref|YP_007296111.1|	-	0.047	13.6	0.0	0.1	12.5	0.0	1.5	1	0	0	1	1	1	0	NACHT	domain
HypA	PF01155.19	gi|433593370|ref|YP_007296111.1|	-	0.12	12.4	0.1	0.27	11.3	0.1	1.5	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
Zn-ribbon_8	PF09723.10	gi|433593370|ref|YP_007296111.1|	-	0.93	9.7	4.0	2.7	8.2	4.0	1.8	1	0	0	1	1	1	0	Zinc	ribbon	domain
HALZ	PF02183.18	gi|433593371|ref|YP_007296112.1|	-	7e-05	23.0	1.2	0.00024	21.3	1.2	2.0	1	1	1	2	2	1	1	Homeobox	associated	leucine	zipper
Seadorna_VP6	PF07407.11	gi|433593371|ref|YP_007296112.1|	-	0.0054	15.7	2.0	0.0069	15.4	2.0	1.1	1	0	0	1	1	1	1	Seadornavirus	VP6	protein
FlaC_arch	PF05377.11	gi|433593371|ref|YP_007296112.1|	-	0.0054	17.1	1.8	0.17	12.3	1.3	2.4	1	1	1	2	2	2	2	Flagella	accessory	protein	C	(FlaC)
Golgin_A5	PF09787.9	gi|433593371|ref|YP_007296112.1|	-	0.0062	16.0	4.7	0.0082	15.7	4.7	1.3	1	0	0	1	1	1	1	Golgin	subfamily	A	member	5
DivIC	PF04977.15	gi|433593371|ref|YP_007296112.1|	-	0.0062	16.3	3.1	0.0062	16.3	3.1	3.1	1	1	2	3	3	3	1	Septum	formation	initiator
bZIP_1	PF00170.21	gi|433593371|ref|YP_007296112.1|	-	0.0065	16.5	0.5	0.0065	16.5	0.5	2.9	3	1	1	4	4	3	1	bZIP	transcription	factor
Cep57_CLD_2	PF14197.6	gi|433593371|ref|YP_007296112.1|	-	0.01	15.9	7.6	0.01	15.9	7.6	2.5	2	0	0	2	2	2	0	Centrosome	localisation	domain	of	PPC89
Mto2_bdg	PF12808.7	gi|433593371|ref|YP_007296112.1|	-	0.015	15.6	3.8	0.015	15.6	3.8	2.7	3	1	0	3	3	2	0	Micro-tubular	organiser	Mto1	C-term	Mto2-binding	region
YabA	PF06156.13	gi|433593371|ref|YP_007296112.1|	-	0.019	15.6	4.8	0.032	14.9	4.1	1.9	1	1	0	1	1	1	0	Initiation	control	protein	YabA
D5_N	PF08706.11	gi|433593371|ref|YP_007296112.1|	-	0.023	15.0	4.2	0.67	10.2	4.2	2.1	1	1	0	1	1	1	0	D5	N	terminal	like
DUF2730	PF10805.8	gi|433593371|ref|YP_007296112.1|	-	0.037	14.1	0.7	0.071	13.2	0.7	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2730)
DUF4201	PF13870.6	gi|433593371|ref|YP_007296112.1|	-	0.037	13.8	8.3	0.044	13.5	7.1	1.6	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4201)
Shugoshin_N	PF07558.11	gi|433593371|ref|YP_007296112.1|	-	0.056	13.3	1.4	0.071	13.0	0.2	1.8	2	0	0	2	2	1	0	Shugoshin	N-terminal	coiled-coil	region
NPV_P10	PF05531.12	gi|433593371|ref|YP_007296112.1|	-	0.069	13.6	0.3	1.9	9.0	0.1	2.2	1	1	1	2	2	2	0	Nucleopolyhedrovirus	P10	protein
DUF5024	PF16427.5	gi|433593371|ref|YP_007296112.1|	-	0.074	13.4	0.3	0.15	12.4	0.3	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF5024)
Fez1	PF06818.15	gi|433593371|ref|YP_007296112.1|	-	0.12	12.8	10.7	0.17	12.3	10.7	1.2	1	0	0	1	1	1	0	Fez1
Snapin_Pallidin	PF14712.6	gi|433593371|ref|YP_007296112.1|	-	0.13	12.7	4.4	0.71	10.3	1.3	2.3	1	1	1	2	2	2	0	Snapin/Pallidin
Rootletin	PF15035.6	gi|433593371|ref|YP_007296112.1|	-	0.21	11.6	14.4	0.42	10.6	13.4	1.8	1	1	1	2	2	2	0	Ciliary	rootlet	component,	centrosome	cohesion
HemX	PF04375.14	gi|433593371|ref|YP_007296112.1|	-	0.39	10.0	7.7	0.61	9.3	7.8	1.3	1	1	0	1	1	1	0	HemX,	putative	uroporphyrinogen-III	C-methyltransferase
Hemagglutinin	PF00509.18	gi|433593371|ref|YP_007296112.1|	-	0.69	8.2	1.5	0.83	8.0	1.5	1.1	1	0	0	1	1	1	0	Haemagglutinin
MctB	PF11382.8	gi|433593371|ref|YP_007296112.1|	-	0.7	9.5	4.0	0.31	10.7	0.8	1.9	1	1	0	1	1	1	0	Copper	transport	outer	membrane	protein,	MctB
DUF3450	PF11932.8	gi|433593371|ref|YP_007296112.1|	-	0.81	8.9	8.1	0.14	11.4	3.3	1.8	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3450)
Prefoldin_2	PF01920.20	gi|433593371|ref|YP_007296112.1|	-	1	9.4	9.0	0.53	10.3	0.8	2.6	1	1	1	2	2	2	0	Prefoldin	subunit
Atg14	PF10186.9	gi|433593371|ref|YP_007296112.1|	-	1.2	8.1	10.4	1.5	7.8	10.4	1.1	1	0	0	1	1	1	0	Vacuolar	sorting	38	and	autophagy-related	subunit	14
TMPIT	PF07851.13	gi|433593371|ref|YP_007296112.1|	-	1.2	8.3	5.1	1.6	7.9	5.1	1.1	1	0	0	1	1	1	0	TMPIT-like	protein
Cep57_MT_bd	PF06657.13	gi|433593371|ref|YP_007296112.1|	-	1.3	9.5	9.5	1.4	9.4	3.5	2.7	1	1	2	3	3	3	0	Centrosome	microtubule-binding	domain	of	Cep57
Fmp27_WPPW	PF10359.9	gi|433593371|ref|YP_007296112.1|	-	1.4	7.7	8.3	1.7	7.4	8.3	1.1	1	0	0	1	1	1	0	RNA	pol	II	promoter	Fmp27	protein	domain
FUSC	PF04632.12	gi|433593371|ref|YP_007296112.1|	-	1.6	7.2	6.7	1.7	7.1	6.7	1.1	1	0	0	1	1	1	0	Fusaric	acid	resistance	protein	family
DUF812	PF05667.11	gi|433593371|ref|YP_007296112.1|	-	2.2	7.1	13.4	5.1	5.9	13.4	1.5	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF812)
V_ATPase_I	PF01496.19	gi|433593371|ref|YP_007296112.1|	-	2.3	6.1	4.0	2.5	5.9	4.0	1.1	1	0	0	1	1	1	0	V-type	ATPase	116kDa	subunit	family
ABC_tran_CTD	PF16326.5	gi|433593371|ref|YP_007296112.1|	-	2.6	8.3	14.8	2.4	8.5	5.9	2.7	2	1	1	3	3	2	0	ABC	transporter	C-terminal	domain
APG6_N	PF17675.1	gi|433593371|ref|YP_007296112.1|	-	3	8.4	22.8	0.14	12.7	11.8	2.2	1	1	1	2	2	2	0	Apg6	coiled-coil	region
Seryl_tRNA_N	PF02403.22	gi|433593371|ref|YP_007296112.1|	-	3.4	8.0	11.2	0.1	12.8	1.2	2.3	1	1	1	2	2	2	0	Seryl-tRNA	synthetase	N-terminal	domain
CENP-H	PF05837.12	gi|433593371|ref|YP_007296112.1|	-	4.7	7.7	13.3	69	3.9	13.3	2.2	1	1	0	1	1	1	0	Centromere	protein	H	(CENP-H)
Spc7	PF08317.11	gi|433593371|ref|YP_007296112.1|	-	4.9	5.9	18.6	0.089	11.7	7.1	2.0	1	1	1	2	2	2	0	Spc7	kinetochore	protein
HTH_45	PF14947.6	gi|433593372|ref|YP_007296113.1|	-	3e-06	27.1	0.0	0.0035	17.3	0.0	2.7	3	0	0	3	3	3	2	Winged	helix-turn-helix
MarR_2	PF12802.7	gi|433593372|ref|YP_007296113.1|	-	4.8e-05	23.1	0.0	0.022	14.6	0.0	2.9	2	1	1	3	3	3	1	MarR	family
DUF505	PF04458.12	gi|433593372|ref|YP_007296113.1|	-	0.00011	20.7	0.1	0.039	12.3	0.0	2.2	2	0	0	2	2	2	2	Protein	of	unknown	function	(DUF505)
Replic_Relax	PF13814.6	gi|433593372|ref|YP_007296113.1|	-	0.00012	22.2	0.1	0.33	11.0	0.1	2.3	1	1	0	2	2	2	2	Replication-relaxation
HTH_23	PF13384.6	gi|433593372|ref|YP_007296113.1|	-	0.00029	20.5	0.0	0.051	13.4	0.0	2.3	2	0	0	2	2	2	1	Homeodomain-like	domain
HTH_24	PF13412.6	gi|433593372|ref|YP_007296113.1|	-	0.0005	19.6	0.4	0.71	9.5	0.1	2.6	2	0	0	2	2	2	2	Winged	helix-turn-helix	DNA-binding
Dimerisation2	PF16864.5	gi|433593372|ref|YP_007296113.1|	-	0.0014	18.6	0.0	1.5	8.9	0.0	2.2	2	0	0	2	2	2	2	Dimerisation	domain
DUF2250	PF10007.9	gi|433593372|ref|YP_007296113.1|	-	0.005	16.9	0.1	0.1	12.7	0.0	2.4	2	1	0	2	2	2	1	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
HTH_20	PF12840.7	gi|433593372|ref|YP_007296113.1|	-	0.0058	16.7	0.0	0.033	14.2	0.0	2.3	3	0	0	3	3	3	1	Helix-turn-helix	domain
HTH_5	PF01022.20	gi|433593372|ref|YP_007296113.1|	-	0.01	15.7	0.0	0.023	14.6	0.0	1.6	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
Fe_dep_repress	PF01325.19	gi|433593372|ref|YP_007296113.1|	-	0.016	15.4	0.0	0.035	14.3	0.0	1.5	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_Crp_2	PF13545.6	gi|433593372|ref|YP_007296113.1|	-	0.019	14.9	0.0	0.087	12.8	0.0	2.1	2	0	0	2	2	2	0	Crp-like	helix-turn-helix	domain
Rrf2	PF02082.20	gi|433593372|ref|YP_007296113.1|	-	0.048	14.0	0.0	0.18	12.2	0.0	1.9	2	0	0	2	2	2	0	Transcriptional	regulator
DUF2408	PF10303.9	gi|433593372|ref|YP_007296113.1|	-	0.068	13.7	0.3	0.11	13.1	0.3	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2408)
ANTAR	PF03861.14	gi|433593372|ref|YP_007296113.1|	-	0.12	12.2	0.3	0.41	10.5	0.0	2.0	2	0	0	2	2	2	0	ANTAR	domain
MarR	PF01047.22	gi|433593372|ref|YP_007296113.1|	-	0.12	12.3	0.0	10	6.1	0.0	2.4	2	0	0	2	2	2	0	MarR	family
RINT1_TIP1	PF04437.13	gi|433593373|ref|YP_007296114.1|	-	0.029	13.3	0.0	0.029	13.3	0.0	1.1	1	0	0	1	1	1	0	RINT-1	/	TIP-1	family
DDE_3	PF13358.6	gi|433593374|ref|YP_007296115.1|	-	1.6e-14	53.9	0.0	1.5e-13	50.8	0.0	2.1	2	0	0	2	2	2	1	DDE	superfamily	endonuclease
HTH_32	PF13565.6	gi|433593374|ref|YP_007296115.1|	-	2.3e-11	44.1	0.3	9.4e-11	42.2	0.0	2.1	2	0	0	2	2	2	1	Homeodomain-like	domain
HTH_29	PF13551.6	gi|433593374|ref|YP_007296115.1|	-	4.4e-10	39.4	0.0	1.4e-09	37.9	0.0	1.9	1	0	0	1	1	1	1	Winged	helix-turn	helix
HTH_23	PF13384.6	gi|433593374|ref|YP_007296115.1|	-	6.7e-09	35.3	0.0	1.5e-08	34.2	0.0	1.6	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_33	PF13592.6	gi|433593374|ref|YP_007296115.1|	-	1.2e-05	24.8	0.0	8.6e-05	22.1	0.0	2.2	2	0	0	2	2	2	1	Winged	helix-turn	helix
HTH_28	PF13518.6	gi|433593374|ref|YP_007296115.1|	-	2.7e-05	24.2	0.0	6.8e-05	22.9	0.0	1.7	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_7	PF02796.15	gi|433593374|ref|YP_007296115.1|	-	0.0018	18.3	0.1	0.0041	17.2	0.1	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain	of	resolvase
Sigma70_r4	PF04545.16	gi|433593374|ref|YP_007296115.1|	-	0.0023	17.4	0.0	0.0074	15.8	0.0	1.8	1	0	0	1	1	1	1	Sigma-70,	region	4
DDE_1	PF03184.19	gi|433593374|ref|YP_007296115.1|	-	0.0027	17.4	0.0	0.0045	16.6	0.0	1.3	1	0	0	1	1	1	1	DDE	superfamily	endonuclease
DUF746	PF05344.11	gi|433593374|ref|YP_007296115.1|	-	0.016	15.1	0.0	0.04	13.8	0.0	1.7	1	0	0	1	1	1	0	Domain	of	Unknown	Function	(DUF746)
LZ_Tnp_IS481	PF13011.6	gi|433593374|ref|YP_007296115.1|	-	0.041	14.4	0.0	0.091	13.3	0.0	1.5	1	0	0	1	1	1	0	leucine-zipper	of	insertion	element	IS481
Sigma70_r4_2	PF08281.12	gi|433593374|ref|YP_007296115.1|	-	0.058	13.1	0.1	0.2	11.3	0.0	1.9	2	0	0	2	2	2	0	Sigma-70,	region	4
rve	PF00665.26	gi|433593374|ref|YP_007296115.1|	-	0.064	13.5	0.0	0.14	12.3	0.0	1.5	1	0	0	1	1	1	0	Integrase	core	domain
Phage_int_SAM_5	PF13102.6	gi|433593375|ref|YP_007296116.1|	-	1.9e-08	34.5	0.0	3.2e-08	33.8	0.0	1.3	1	0	0	1	1	1	1	Phage	integrase	SAM-like	domain
Phage_integrase	PF00589.22	gi|433593375|ref|YP_007296116.1|	-	5.7e-06	26.2	0.4	7.4e-05	22.6	0.4	2.4	1	1	0	1	1	1	1	Phage	integrase	family
Phage_int_SAM_1	PF02899.17	gi|433593375|ref|YP_007296116.1|	-	0.00079	19.7	0.3	0.031	14.6	0.2	2.7	1	1	1	2	2	2	2	Phage	integrase,	N-terminal	SAM-like	domain
CHASE8	PF17152.4	gi|433593375|ref|YP_007296116.1|	-	0.038	14.2	0.0	0.24	11.6	0.0	2.2	2	0	0	2	2	2	0	Periplasmic	sensor	domain
RAMPs	PF03787.15	gi|433593378|ref|YP_007296119.1|	-	0.025	14.6	0.9	0.22	11.6	0.1	2.6	2	1	0	2	2	2	0	RAMP	superfamily
Ag332	PF04671.12	gi|433593381|ref|YP_007296122.1|	-	0.008	16.1	0.5	0.017	15.0	0.5	1.6	1	0	0	1	1	1	1	Erythrocyte	membrane-associated	giant	protein	antigen	332
TAT_signal	PF10518.9	gi|433593381|ref|YP_007296122.1|	-	0.026	14.4	2.7	0.053	13.4	2.7	1.6	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
MarR_2	PF12802.7	gi|433593383|ref|YP_007296124.1|	-	3.7e-07	29.9	0.0	4.5e-07	29.7	0.0	1.3	1	0	0	1	1	1	1	MarR	family
HTH_24	PF13412.6	gi|433593383|ref|YP_007296124.1|	-	8.9e-07	28.4	0.0	1.4e-06	27.8	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_20	PF12840.7	gi|433593383|ref|YP_007296124.1|	-	0.00043	20.3	0.0	0.00058	19.9	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_AsnC-type	PF13404.6	gi|433593383|ref|YP_007296124.1|	-	0.0018	18.0	0.0	0.0039	17.0	0.0	1.6	1	1	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_5	PF01022.20	gi|433593383|ref|YP_007296124.1|	-	0.0061	16.4	0.0	0.0081	16.0	0.0	1.2	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_27	PF13463.6	gi|433593383|ref|YP_007296124.1|	-	0.0062	17.0	0.0	0.0082	16.6	0.0	1.3	1	1	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_DeoR	PF08220.12	gi|433593383|ref|YP_007296124.1|	-	0.023	14.4	0.0	0.031	14.0	0.0	1.2	1	0	0	1	1	1	0	DeoR-like	helix-turn-helix	domain
HTH_IclR	PF09339.10	gi|433593383|ref|YP_007296124.1|	-	0.034	14.0	0.0	0.045	13.5	0.0	1.3	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
RHH_1	PF01402.21	gi|433593384|ref|YP_007296125.1|	-	4.3e-09	36.0	0.2	8.6e-09	35.0	0.2	1.5	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
HicB_lk_antitox	PF15919.5	gi|433593384|ref|YP_007296125.1|	-	7.2e-05	22.9	0.0	0.0001	22.4	0.0	1.2	1	0	0	1	1	1	1	HicB_like	antitoxin	of	bacterial	toxin-antitoxin	system
RHH_8	PF17723.1	gi|433593384|ref|YP_007296125.1|	-	0.046	13.9	0.0	0.061	13.5	0.0	1.2	1	0	0	1	1	1	0	Ribbon-Helix-Helix	transcriptional	regulator	family
ParE_toxin	PF05016.15	gi|433593385|ref|YP_007296126.1|	-	0.00091	19.8	0.1	0.0014	19.2	0.1	1.3	1	1	0	1	1	1	1	ParE	toxin	of	type	II	toxin-antitoxin	system,	parDE
DDE_Tnp_1	PF01609.21	gi|433593386|ref|YP_007296127.1|	-	5.4e-12	45.8	0.0	1.5e-11	44.3	0.0	1.8	2	0	0	2	2	2	1	Transposase	DDE	domain
DDE_Tnp_1_4	PF13701.6	gi|433593386|ref|YP_007296127.1|	-	0.00089	17.6	0.0	0.11	10.7	0.0	2.5	2	1	0	2	2	2	2	Transposase	DDE	domain	group	1
FixS	PF03597.15	gi|433593386|ref|YP_007296127.1|	-	0.048	13.4	0.0	0.098	12.4	0.0	1.5	1	0	0	1	1	1	0	Cytochrome	oxidase	maturation	protein	cbb3-type
DUF1641	PF07849.11	gi|433593386|ref|YP_007296127.1|	-	0.054	13.4	1.6	0.088	12.7	0.0	2.3	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF1641)
OrfB_IS605	PF01385.19	gi|433593387|ref|YP_007296128.1|	-	2e-27	95.8	0.1	6.1e-27	94.2	0.0	1.9	2	0	0	2	2	2	1	Probable	transposase
OrfB_Zn_ribbon	PF07282.11	gi|433593387|ref|YP_007296128.1|	-	4.4e-21	74.6	0.9	9.1e-21	73.6	0.9	1.6	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
C1_2	PF03107.16	gi|433593387|ref|YP_007296128.1|	-	0.0024	18.1	0.9	0.006	16.9	0.9	1.6	1	0	0	1	1	1	1	C1	domain
A2L_zn_ribbon	PF08792.10	gi|433593387|ref|YP_007296128.1|	-	0.15	11.8	3.4	0.4	10.5	3.4	1.7	1	0	0	1	1	1	0	A2L	zinc	ribbon	domain
Ribosomal_L37ae	PF01780.19	gi|433593387|ref|YP_007296128.1|	-	0.19	11.9	2.4	0.44	10.7	0.9	2.2	2	0	0	2	2	2	0	Ribosomal	L37ae	protein	family
DUF86	PF01934.17	gi|433593388|ref|YP_007296129.1|	-	1.4e-08	34.6	0.1	1.6e-08	34.4	0.1	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF86
Glu-tRNAGln	PF02686.15	gi|433593388|ref|YP_007296129.1|	-	0.012	15.9	0.3	0.016	15.5	0.3	1.2	1	0	0	1	1	1	0	Glu-tRNAGln	amidotransferase	C	subunit
HTH_20	PF12840.7	gi|433593389|ref|YP_007296130.1|	-	0.0052	16.8	0.4	0.0076	16.3	0.4	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_IclR	PF09339.10	gi|433593389|ref|YP_007296130.1|	-	0.0055	16.5	0.2	0.0083	15.9	0.2	1.2	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
ZapA	PF05164.13	gi|433593389|ref|YP_007296130.1|	-	0.13	12.7	0.1	0.27	11.7	0.1	1.5	1	0	0	1	1	1	0	Cell	division	protein	ZapA
OrfB_Zn_ribbon	PF07282.11	gi|433593391|ref|YP_007296132.1|	-	1.4e-22	79.4	1.4	3.1e-22	78.3	1.4	1.6	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
OrfB_IS605	PF01385.19	gi|433593391|ref|YP_007296132.1|	-	0.0001	22.5	0.1	0.00027	21.2	0.0	1.7	2	0	0	2	2	2	1	Probable	transposase
HypA	PF01155.19	gi|433593391|ref|YP_007296132.1|	-	0.078	13.0	0.1	0.15	12.0	0.1	1.5	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
Rubredoxin_2	PF18073.1	gi|433593391|ref|YP_007296132.1|	-	0.95	9.2	13.3	4.2	7.2	0.6	3.5	3	0	0	3	3	3	0	Rubredoxin	metal	binding	domain
RNA_POL_M_15KD	PF02150.16	gi|433593391|ref|YP_007296132.1|	-	4.1	7.4	6.5	1.6	8.6	3.4	2.0	2	1	0	2	2	2	0	RNA	polymerases	M/15	Kd	subunit
zinc_ribbon_2	PF13240.6	gi|433593391|ref|YP_007296132.1|	-	7	6.5	10.6	1.4	8.8	3.9	2.8	2	1	1	3	3	3	0	zinc-ribbon	domain
AAA_31	PF13614.6	gi|433593392|ref|YP_007296133.1|	-	1.2e-35	123.1	0.0	1.5e-35	122.7	0.0	1.1	1	0	0	1	1	1	1	AAA	domain
CbiA	PF01656.23	gi|433593392|ref|YP_007296133.1|	-	5.3e-17	62.1	0.0	7.5e-17	61.6	0.0	1.2	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
Fer4_NifH	PF00142.18	gi|433593392|ref|YP_007296133.1|	-	1.6e-07	31.1	0.2	4.9e-05	22.9	0.1	2.1	2	0	0	2	2	2	2	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
MipZ	PF09140.11	gi|433593392|ref|YP_007296133.1|	-	1.9e-07	30.7	0.3	1.2e-05	24.8	0.1	2.2	1	1	0	2	2	2	1	ATPase	MipZ
ParA	PF10609.9	gi|433593392|ref|YP_007296133.1|	-	4.2e-07	29.7	0.0	0.0032	17.0	0.0	2.3	2	0	0	2	2	2	2	NUBPL	iron-transfer	P-loop	NTPase
CBP_BcsQ	PF06564.12	gi|433593392|ref|YP_007296133.1|	-	1.3e-05	24.8	0.1	0.058	12.9	0.0	2.4	2	1	0	2	2	2	2	Cellulose	biosynthesis	protein	BcsQ
ArsA_ATPase	PF02374.15	gi|433593392|ref|YP_007296133.1|	-	0.00051	19.3	1.1	0.0014	17.9	0.2	2.0	2	1	0	2	2	2	1	Anion-transporting	ATPase
VirC1	PF07015.11	gi|433593392|ref|YP_007296133.1|	-	0.0031	16.8	3.1	0.014	14.7	0.1	2.8	2	1	0	3	3	3	1	VirC1	protein
RuvX	PF03652.15	gi|433593392|ref|YP_007296133.1|	-	0.12	12.7	0.0	0.24	11.8	0.0	1.4	1	0	0	1	1	1	0	Holliday	junction	resolvase
fn3_5	PF06280.12	gi|433593393|ref|YP_007296134.1|	-	0.069	13.8	0.8	0.088	13.5	0.8	1.3	1	0	0	1	1	1	0	Fn3-like	domain
Glycoprotein_G	PF00802.19	gi|433593393|ref|YP_007296134.1|	-	0.087	12.2	1.4	0.1	12.0	1.4	1.3	1	0	0	1	1	1	0	Pneumovirus	attachment	glycoprotein	G
DDE_Tnp_1	PF01609.21	gi|433593394|ref|YP_007296135.1|	-	0.012	15.3	0.0	0.024	14.3	0.0	1.5	1	1	0	1	1	1	0	Transposase	DDE	domain
OrfB_IS605	PF01385.19	gi|433593397|ref|YP_007296138.1|	-	2.5e-22	79.4	0.6	5.3e-22	78.3	0.6	1.5	1	0	0	1	1	1	1	Probable	transposase
OrfB_Zn_ribbon	PF07282.11	gi|433593397|ref|YP_007296138.1|	-	5.4e-21	74.3	3.0	1e-20	73.4	0.2	2.7	3	0	0	3	3	3	1	Putative	transposase	DNA-binding	domain
HTH_OrfB_IS605	PF12323.8	gi|433593397|ref|YP_007296138.1|	-	1.9e-07	30.5	0.2	3.5e-07	29.6	0.2	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
Zn-ribbon_8	PF09723.10	gi|433593397|ref|YP_007296138.1|	-	0.093	12.9	5.7	12	6.1	5.7	2.7	1	1	0	1	1	1	0	Zinc	ribbon	domain
DZR	PF12773.7	gi|433593397|ref|YP_007296138.1|	-	0.21	11.6	2.6	0.24	11.5	1.3	1.8	2	0	0	2	2	2	0	Double	zinc	ribbon
Rubredoxin_2	PF18073.1	gi|433593397|ref|YP_007296138.1|	-	1.5	8.6	4.5	2.5	7.9	2.3	2.4	2	1	0	2	2	2	0	Rubredoxin	metal	binding	domain
HTH_23	PF13384.6	gi|433593398|ref|YP_007296139.1|	-	2e-05	24.2	0.1	4.4e-05	23.1	0.1	1.5	1	0	0	1	1	1	1	Homeodomain-like	domain
TrmB	PF01978.19	gi|433593398|ref|YP_007296139.1|	-	0.00011	22.0	0.0	0.0002	21.2	0.0	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_29	PF13551.6	gi|433593398|ref|YP_007296139.1|	-	0.007	16.4	0.0	0.013	15.5	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn	helix
HTH_28	PF13518.6	gi|433593398|ref|YP_007296139.1|	-	0.036	14.2	0.1	0.096	12.8	0.1	1.7	1	0	0	1	1	1	0	Helix-turn-helix	domain
MarR	PF01047.22	gi|433593398|ref|YP_007296139.1|	-	0.042	13.8	0.0	0.069	13.1	0.0	1.3	1	0	0	1	1	1	0	MarR	family
PIN_3	PF13470.6	gi|433593399|ref|YP_007296140.1|	-	5.5e-18	65.8	0.2	6.5e-18	65.6	0.2	1.1	1	0	0	1	1	1	1	PIN	domain
PIN	PF01850.21	gi|433593399|ref|YP_007296140.1|	-	0.00093	19.7	0.4	0.0016	18.9	0.4	1.5	1	1	0	1	1	1	1	PIN	domain
PurA	PF04845.13	gi|433593399|ref|YP_007296140.1|	-	0.069	12.5	0.0	0.09	12.1	0.0	1.1	1	0	0	1	1	1	0	PurA	ssDNA	and	RNA-binding	protein
MazE_antitoxin	PF04014.18	gi|433593400|ref|YP_007296141.1|	-	1.6e-08	34.3	0.1	2.8e-08	33.5	0.0	1.4	2	0	0	2	2	2	1	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
PrlF_antitoxin	PF15937.5	gi|433593400|ref|YP_007296141.1|	-	0.0031	17.9	0.1	0.0049	17.3	0.1	1.6	1	1	0	1	1	1	1	prlF	antitoxin	for	toxin	YhaV_toxin
MraZ	PF02381.18	gi|433593400|ref|YP_007296141.1|	-	0.0049	16.8	0.0	0.0081	16.1	0.0	1.4	1	1	0	1	1	1	1	MraZ	protein,	putative	antitoxin-like
MarR_2	PF12802.7	gi|433593403|ref|YP_007296144.1|	-	0.0045	16.8	0.0	0.008	16.0	0.0	1.4	1	0	0	1	1	1	1	MarR	family
Rrf2	PF02082.20	gi|433593403|ref|YP_007296144.1|	-	0.01	16.2	0.0	0.46	10.9	0.0	2.3	2	0	0	2	2	2	0	Transcriptional	regulator
HTH_IclR	PF09339.10	gi|433593403|ref|YP_007296144.1|	-	0.011	15.5	0.0	0.037	13.8	0.0	1.8	2	0	0	2	2	2	0	IclR	helix-turn-helix	domain
HTH_28	PF13518.6	gi|433593403|ref|YP_007296144.1|	-	0.016	15.3	0.1	0.034	14.3	0.0	1.6	2	0	0	2	2	2	0	Helix-turn-helix	domain
TrmB	PF01978.19	gi|433593403|ref|YP_007296144.1|	-	0.018	14.9	0.0	0.032	14.1	0.0	1.3	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_23	PF13384.6	gi|433593403|ref|YP_007296144.1|	-	0.035	13.9	0.0	0.071	12.9	0.0	1.4	1	0	0	1	1	1	0	Homeodomain-like	domain
GntR	PF00392.21	gi|433593403|ref|YP_007296144.1|	-	0.048	13.3	0.0	0.17	11.5	0.0	1.8	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	gntR	family
Phage_NinH	PF06322.11	gi|433593403|ref|YP_007296144.1|	-	0.1	12.5	0.0	0.2	11.6	0.0	1.5	1	0	0	1	1	1	0	Phage	NinH	protein
TmoB	PF06234.12	gi|433593403|ref|YP_007296144.1|	-	0.1	12.7	0.0	0.26	11.4	0.0	1.6	1	0	0	1	1	1	0	Toluene-4-monooxygenase	system	protein	B	(TmoB)
HTH_36	PF13730.6	gi|433593403|ref|YP_007296144.1|	-	0.1	12.6	0.0	0.17	11.9	0.0	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
Fe_dep_repress	PF01325.19	gi|433593403|ref|YP_007296144.1|	-	0.12	12.6	0.0	0.25	11.6	0.0	1.5	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_24	PF13412.6	gi|433593403|ref|YP_007296144.1|	-	0.16	11.6	0.0	0.24	11.0	0.0	1.3	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
ATPase_2	PF01637.18	gi|433593404|ref|YP_007296145.1|	-	2e-24	86.8	0.0	1.2e-23	84.2	0.0	2.2	1	1	0	1	1	1	1	ATPase	domain	predominantly	from	Archaea
DUF234	PF03008.14	gi|433593404|ref|YP_007296145.1|	-	1.5e-19	70.3	0.0	2.8e-19	69.4	0.0	1.4	1	0	0	1	1	1	1	Archaea	bacterial	proteins	of	unknown	function
AAA_14	PF13173.6	gi|433593404|ref|YP_007296145.1|	-	5.6e-08	32.9	0.0	2.2e-07	30.9	0.0	1.9	2	0	0	2	2	2	1	AAA	domain
AAA_16	PF13191.6	gi|433593404|ref|YP_007296145.1|	-	2e-06	28.3	0.7	6.3e-06	26.7	0.1	2.2	2	2	0	2	2	2	1	AAA	ATPase	domain
MarR_2	PF12802.7	gi|433593404|ref|YP_007296145.1|	-	0.0007	19.4	0.1	0.011	15.6	0.0	2.4	2	0	0	2	2	2	1	MarR	family
AAA_22	PF13401.6	gi|433593404|ref|YP_007296145.1|	-	0.0019	18.5	0.0	0.005	17.1	0.0	1.7	2	0	0	2	2	2	1	AAA	domain
HTH_24	PF13412.6	gi|433593404|ref|YP_007296145.1|	-	0.0057	16.2	0.1	0.011	15.3	0.1	1.5	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
DUF402	PF04167.13	gi|433593404|ref|YP_007296145.1|	-	0.029	14.5	0.2	0.084	13.1	0.2	1.7	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF402)
FaeA	PF04703.12	gi|433593404|ref|YP_007296145.1|	-	0.035	14.5	0.1	0.074	13.4	0.1	1.4	1	0	0	1	1	1	0	FaeA-like	protein
TrmB	PF01978.19	gi|433593404|ref|YP_007296145.1|	-	0.042	13.7	0.0	0.1	12.5	0.0	1.7	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
B-block_TFIIIC	PF04182.12	gi|433593404|ref|YP_007296145.1|	-	0.06	13.5	0.0	0.11	12.7	0.0	1.4	1	0	0	1	1	1	0	B-block	binding	subunit	of	TFIIIC
HTH_IclR	PF09339.10	gi|433593404|ref|YP_007296145.1|	-	0.11	12.4	0.0	0.25	11.2	0.0	1.6	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
Peptidase_M78	PF06114.13	gi|433593405|ref|YP_007296146.1|	-	0.0049	16.8	0.0	0.0086	16.0	0.0	1.4	1	0	0	1	1	1	1	IrrE	N-terminal-like	domain
SprT-like	PF10263.9	gi|433593405|ref|YP_007296146.1|	-	0.013	15.3	0.2	0.045	13.6	0.1	1.8	2	0	0	2	2	2	0	SprT-like	family
WXG100	PF06013.12	gi|433593405|ref|YP_007296146.1|	-	0.047	13.9	0.4	14	6.0	0.0	3.2	3	0	0	3	3	3	0	Proteins	of	100	residues	with	WXG
MarR_2	PF12802.7	gi|433593407|ref|YP_007296148.1|	-	2.9e-09	36.7	0.9	0.0017	18.2	0.2	2.6	2	0	0	2	2	2	2	MarR	family
HTH_20	PF12840.7	gi|433593407|ref|YP_007296148.1|	-	2.8e-08	33.7	0.7	0.0028	17.7	0.0	2.4	2	0	0	2	2	2	2	Helix-turn-helix	domain
HTH_27	PF13463.6	gi|433593407|ref|YP_007296148.1|	-	1.2e-07	32.1	0.0	0.0016	18.9	0.0	2.4	2	0	0	2	2	2	2	Winged	helix	DNA-binding	domain
HTH_Crp_2	PF13545.6	gi|433593407|ref|YP_007296148.1|	-	6.8e-06	26.0	0.0	0.016	15.2	0.0	2.4	2	0	0	2	2	2	2	Crp-like	helix-turn-helix	domain
HTH_IclR	PF09339.10	gi|433593407|ref|YP_007296148.1|	-	1.5e-05	24.6	2.7	0.013	15.3	0.5	2.7	2	0	0	2	2	2	2	IclR	helix-turn-helix	domain
HTH_29	PF13551.6	gi|433593407|ref|YP_007296148.1|	-	1.6e-05	24.8	0.1	0.0011	19.0	0.0	2.5	2	0	0	2	2	2	1	Winged	helix-turn	helix
Sigma70_r3	PF04539.16	gi|433593407|ref|YP_007296148.1|	-	8.8e-05	22.5	0.0	0.018	15.1	0.0	2.5	2	0	0	2	2	2	1	Sigma-70	region	3
TrmB	PF01978.19	gi|433593407|ref|YP_007296148.1|	-	0.00037	20.3	0.0	0.2	11.6	0.0	2.9	2	1	1	3	3	3	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_28	PF13518.6	gi|433593407|ref|YP_007296148.1|	-	0.00086	19.4	0.2	0.2	11.8	0.0	3.4	4	0	0	4	4	3	1	Helix-turn-helix	domain
GntR	PF00392.21	gi|433593407|ref|YP_007296148.1|	-	0.0011	18.5	0.4	0.57	9.9	0.0	3.4	3	0	0	3	3	3	1	Bacterial	regulatory	proteins,	gntR	family
MarR	PF01047.22	gi|433593407|ref|YP_007296148.1|	-	0.0013	18.6	0.0	0.081	12.9	0.0	2.3	2	0	0	2	2	2	1	MarR	family
HTH_24	PF13412.6	gi|433593407|ref|YP_007296148.1|	-	0.0026	17.3	0.0	0.24	11.0	0.0	2.3	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
HTH_10	PF04967.12	gi|433593407|ref|YP_007296148.1|	-	0.0031	17.3	0.0	0.39	10.5	0.0	2.5	2	0	0	2	2	2	1	HTH	DNA	binding	domain
Dimerisation2	PF16864.5	gi|433593407|ref|YP_007296148.1|	-	0.012	15.5	0.0	0.35	10.9	0.0	2.2	2	0	0	2	2	2	0	Dimerisation	domain
HTH_23	PF13384.6	gi|433593407|ref|YP_007296148.1|	-	0.018	14.8	0.0	4.4	7.2	0.0	2.7	2	0	0	2	2	2	0	Homeodomain-like	domain
Rrf2	PF02082.20	gi|433593407|ref|YP_007296148.1|	-	0.031	14.6	0.0	7.1	7.1	0.0	2.5	2	0	0	2	2	2	0	Transcriptional	regulator
Sigma70_r4	PF04545.16	gi|433593407|ref|YP_007296148.1|	-	0.038	13.5	0.0	1	9.0	0.0	2.7	2	0	0	2	2	2	0	Sigma-70,	region	4
HTH_11	PF08279.12	gi|433593407|ref|YP_007296148.1|	-	0.074	13.0	0.0	0.91	9.5	0.0	2.2	2	0	0	2	2	2	0	HTH	domain
DUF1441	PF07278.11	gi|433593407|ref|YP_007296148.1|	-	0.077	12.9	0.0	0.14	12.1	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1441)
HTH_AsnC-type	PF13404.6	gi|433593407|ref|YP_007296148.1|	-	0.091	12.6	0.1	5.9	6.8	0.0	2.7	2	0	0	2	2	2	0	AsnC-type	helix-turn-helix	domain
HTH_AraC	PF00165.23	gi|433593407|ref|YP_007296148.1|	-	0.11	12.7	0.0	21	5.4	0.0	2.6	2	0	0	2	2	2	0	Bacterial	regulatory	helix-turn-helix	proteins,	AraC	family
HTH_15	PF12324.8	gi|433593407|ref|YP_007296148.1|	-	0.11	12.5	0.0	0.84	9.6	0.0	2.2	2	0	0	2	2	2	0	Helix-turn-helix	domain	of	alkylmercury	lyase
RPA_interact_C	PF14768.6	gi|433593409|ref|YP_007296150.1|	-	0.0041	17.7	0.4	0.0054	17.3	0.4	1.2	1	0	0	1	1	1	1	Replication	protein	A	interacting	C-terminal
zinc_ribbon_2	PF13240.6	gi|433593409|ref|YP_007296150.1|	-	0.012	15.3	1.0	3.8	7.3	0.1	2.4	2	0	0	2	2	2	0	zinc-ribbon	domain
Nudix_N_2	PF14803.6	gi|433593409|ref|YP_007296150.1|	-	0.014	15.3	2.8	2.1	8.4	0.1	2.7	3	0	0	3	3	3	0	Nudix	N-terminal
DUF2318	PF10080.9	gi|433593409|ref|YP_007296150.1|	-	0.018	15.2	0.1	0.022	14.8	0.1	1.2	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2318)
DZR	PF12773.7	gi|433593409|ref|YP_007296150.1|	-	0.019	15.0	0.6	0.029	14.4	0.6	1.3	1	0	0	1	1	1	0	Double	zinc	ribbon
GFA	PF04828.14	gi|433593409|ref|YP_007296150.1|	-	0.043	14.2	1.4	0.8	10.1	0.1	2.2	1	1	1	2	2	2	0	Glutathione-dependent	formaldehyde-activating	enzyme
DpnI	PF06044.12	gi|433593409|ref|YP_007296150.1|	-	0.085	12.5	0.3	0.1	12.2	0.3	1.2	1	0	0	1	1	1	0	Dam-replacing	family
Zn-ribbon_8	PF09723.10	gi|433593409|ref|YP_007296150.1|	-	0.2	11.8	1.2	18	5.6	0.4	2.3	2	0	0	2	2	2	0	Zinc	ribbon	domain
DNA_ligase_ZBD	PF03119.16	gi|433593409|ref|YP_007296150.1|	-	0.24	11.5	4.4	0.69	10.0	0.4	2.5	2	0	0	2	2	2	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
RNA_POL_M_15KD	PF02150.16	gi|433593410|ref|YP_007296151.1|	-	0.00019	21.2	2.4	0.00036	20.3	0.2	2.2	2	0	0	2	2	2	1	RNA	polymerases	M/15	Kd	subunit
Rubredoxin_2	PF18073.1	gi|433593410|ref|YP_007296151.1|	-	0.07	12.9	0.2	0.07	12.9	0.2	2.1	2	0	0	2	2	2	0	Rubredoxin	metal	binding	domain
OrfB_Zn_ribbon	PF07282.11	gi|433593410|ref|YP_007296151.1|	-	0.3	11.1	1.9	0.64	10.0	1.5	1.7	1	1	0	1	1	1	0	Putative	transposase	DNA-binding	domain
Exog_C	PF18026.1	gi|433593411|ref|YP_007296152.1|	-	0.11	12.5	1.3	1.2	9.2	0.7	2.2	2	0	0	2	2	2	0	Endo/exonuclease	(EXOG)	C-terminal	domain
DDE_Tnp_IS1595	PF12762.7	gi|433593412|ref|YP_007296153.1|	-	2.9e-21	76.1	0.0	4.5e-21	75.5	0.0	1.2	1	0	0	1	1	1	1	ISXO2-like	transposase	domain
Zn_Tnp_IS1595	PF12760.7	gi|433593412|ref|YP_007296153.1|	-	3.6e-09	36.4	2.4	7e-09	35.5	2.4	1.5	1	0	0	1	1	1	1	Transposase	zinc-ribbon	domain
DUF2089	PF09862.9	gi|433593412|ref|YP_007296153.1|	-	0.00031	20.8	0.0	0.00051	20.0	0.0	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF2089)
Zn_Tnp_IS1	PF03811.13	gi|433593412|ref|YP_007296153.1|	-	0.00034	20.3	4.2	0.00095	18.9	4.2	1.8	1	0	0	1	1	1	1	InsA	N-terminal	domain
ADK_lid	PF05191.14	gi|433593412|ref|YP_007296153.1|	-	0.019	14.9	0.1	0.11	12.5	0.1	2.2	2	0	0	2	2	2	0	Adenylate	kinase,	active	site	lid
Zn-ribbon_8	PF09723.10	gi|433593412|ref|YP_007296153.1|	-	0.064	13.4	0.3	4	7.6	0.1	2.5	2	0	0	2	2	2	0	Zinc	ribbon	domain
zf-C2H2_4	PF13894.6	gi|433593412|ref|YP_007296153.1|	-	0.39	11.7	1.6	1.6	9.7	0.2	2.5	2	0	0	2	2	2	0	C2H2-type	zinc	finger
zf_UBZ	PF18439.1	gi|433593412|ref|YP_007296153.1|	-	0.47	10.1	1.5	9.1	6.0	0.2	2.3	2	0	0	2	2	2	0	Ubiquitin-Binding	Zinc	Finger
zf-C2H2	PF00096.26	gi|433593412|ref|YP_007296153.1|	-	4.1	8.1	4.8	0.6	10.7	0.5	1.9	2	0	0	2	2	2	0	Zinc	finger,	C2H2	type
MarR_2	PF12802.7	gi|433593413|ref|YP_007296154.1|	-	1.2e-05	25.0	0.0	1.7e-05	24.6	0.0	1.2	1	0	0	1	1	1	1	MarR	family
TrmB	PF01978.19	gi|433593413|ref|YP_007296154.1|	-	9.1e-05	22.3	0.0	0.00012	21.9	0.0	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
AbiEi_4	PF13338.6	gi|433593413|ref|YP_007296154.1|	-	0.00055	20.0	0.2	0.00087	19.4	0.2	1.4	1	0	0	1	1	1	1	Transcriptional	regulator,	AbiEi	antitoxin
MarR	PF01047.22	gi|433593413|ref|YP_007296154.1|	-	0.0027	17.6	0.0	0.0046	16.9	0.0	1.3	1	0	0	1	1	1	1	MarR	family
HTH_Crp_2	PF13545.6	gi|433593413|ref|YP_007296154.1|	-	0.0099	15.8	0.0	0.014	15.3	0.0	1.3	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
GntR	PF00392.21	gi|433593413|ref|YP_007296154.1|	-	0.018	14.7	0.1	0.028	14.1	0.1	1.2	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
RepC	PF06504.11	gi|433593413|ref|YP_007296154.1|	-	0.06	12.5	0.0	0.06	12.5	0.0	1.1	1	0	0	1	1	1	0	Replication	protein	C	(RepC)
DDE_Tnp_IS66	PF03050.14	gi|433593415|ref|YP_007296156.1|	-	2.7e-49	168.2	0.1	2.7e-49	168.2	0.1	2.1	2	0	0	2	2	2	1	Transposase	IS66	family
SlyX	PF04102.12	gi|433593415|ref|YP_007296156.1|	-	7.4e-09	36.1	7.8	2e-08	34.7	7.8	1.8	1	0	0	1	1	1	1	SlyX
zf-IS66	PF13005.7	gi|433593415|ref|YP_007296156.1|	-	9e-06	26.0	5.0	9e-06	26.0	5.0	2.7	3	0	0	3	3	1	1	zinc-finger	binding	domain	of	transposase	IS66
MscS_porin	PF12795.7	gi|433593415|ref|YP_007296156.1|	-	9.7e-06	25.3	6.6	1.7e-05	24.5	6.6	1.3	1	0	0	1	1	1	1	Mechanosensitive	ion	channel	porin	domain
DUF16	PF01519.16	gi|433593415|ref|YP_007296156.1|	-	0.00055	20.4	7.2	0.0011	19.4	7.2	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF16
UPF0242	PF06785.11	gi|433593415|ref|YP_007296156.1|	-	0.0015	18.7	13.2	0.0025	17.9	13.2	1.3	1	0	0	1	1	1	1	Uncharacterised	protein	family	(UPF0242)	N-terminus
HSBP1	PF06825.12	gi|433593415|ref|YP_007296156.1|	-	0.0024	17.7	6.2	0.016	15.0	0.8	2.6	1	1	0	2	2	2	1	Heat	shock	factor	binding	protein	1
SKA1	PF07160.12	gi|433593415|ref|YP_007296156.1|	-	0.0035	17.2	1.0	0.0057	16.5	1.0	1.3	1	0	0	1	1	1	1	Spindle	and	kinetochore-associated	protein	1
Herpes_UL14	PF03580.14	gi|433593415|ref|YP_007296156.1|	-	0.0048	17.2	1.4	0.0088	16.3	1.4	1.4	1	0	0	1	1	1	1	Herpesvirus	UL14-like	protein
Atg14	PF10186.9	gi|433593415|ref|YP_007296156.1|	-	0.018	14.2	7.6	0.028	13.5	7.6	1.2	1	0	0	1	1	1	0	Vacuolar	sorting	38	and	autophagy-related	subunit	14
DDE_Tnp_IS240	PF13610.6	gi|433593415|ref|YP_007296156.1|	-	0.019	15.2	2.0	0.087	13.1	0.0	2.4	2	1	0	2	2	2	0	DDE	domain
YkyA	PF10368.9	gi|433593415|ref|YP_007296156.1|	-	0.021	14.5	9.5	0.035	13.8	9.5	1.2	1	0	0	1	1	1	0	Putative	cell-wall	binding	lipoprotein
HemX	PF04375.14	gi|433593415|ref|YP_007296156.1|	-	0.024	13.9	4.1	0.038	13.3	4.1	1.2	1	0	0	1	1	1	0	HemX,	putative	uroporphyrinogen-III	C-methyltransferase
PKcGMP_CC	PF16808.5	gi|433593415|ref|YP_007296156.1|	-	0.026	14.4	26.3	0.13	12.1	6.8	2.6	2	0	0	2	2	2	0	Coiled-coil	N-terminus	of	cGMP-dependent	protein	kinase
Fmp27_WPPW	PF10359.9	gi|433593415|ref|YP_007296156.1|	-	0.031	13.1	5.6	0.049	12.5	5.6	1.2	1	0	0	1	1	1	0	RNA	pol	II	promoter	Fmp27	protein	domain
Exonuc_VII_L	PF02601.15	gi|433593415|ref|YP_007296156.1|	-	0.036	13.6	3.6	0.064	12.8	3.6	1.3	1	0	0	1	1	1	0	Exonuclease	VII,	large	subunit
ATG16	PF08614.11	gi|433593415|ref|YP_007296156.1|	-	0.051	13.8	10.6	0.1	12.8	10.6	1.5	1	0	0	1	1	1	0	Autophagy	protein	16	(ATG16)
AAA_13	PF13166.6	gi|433593415|ref|YP_007296156.1|	-	0.061	12.0	8.2	0.088	11.4	8.2	1.1	1	0	0	1	1	1	0	AAA	domain
DZR	PF12773.7	gi|433593415|ref|YP_007296156.1|	-	0.099	12.7	2.7	0.25	11.4	2.7	1.6	1	0	0	1	1	1	0	Double	zinc	ribbon
GAS	PF13851.6	gi|433593415|ref|YP_007296156.1|	-	0.11	11.9	9.7	0.2	11.0	9.7	1.3	1	0	0	1	1	1	0	Growth-arrest	specific	micro-tubule	binding
Cortex-I_coil	PF09304.10	gi|433593415|ref|YP_007296156.1|	-	0.11	12.7	10.5	0.23	11.7	10.5	1.5	1	0	0	1	1	1	0	Cortexillin	I,	coiled	coil
Phage_GPO	PF05929.11	gi|433593415|ref|YP_007296156.1|	-	0.11	12.1	3.1	0.18	11.4	3.1	1.3	1	0	0	1	1	1	0	Phage	capsid	scaffolding	protein	(GPO)	serine	peptidase
DUF3552	PF12072.8	gi|433593415|ref|YP_007296156.1|	-	0.11	11.9	15.6	0.2	11.1	15.6	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3552)
Terminase_4	PF05119.12	gi|433593415|ref|YP_007296156.1|	-	0.14	12.6	0.7	0.73	10.3	0.2	2.3	2	0	0	2	2	2	0	Phage	terminase,	small	subunit
DUF1664	PF07889.12	gi|433593415|ref|YP_007296156.1|	-	0.15	12.1	5.3	0.3	11.1	5.3	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1664)
Spc7	PF08317.11	gi|433593415|ref|YP_007296156.1|	-	0.15	10.9	11.6	0.17	10.7	10.5	1.6	2	0	0	2	2	1	0	Spc7	kinetochore	protein
FliD_C	PF07195.12	gi|433593415|ref|YP_007296156.1|	-	0.17	11.3	3.8	0.26	10.7	3.8	1.3	1	0	0	1	1	1	0	Flagellar	hook-associated	protein	2	C-terminus
TMF_DNA_bd	PF12329.8	gi|433593415|ref|YP_007296156.1|	-	0.17	11.9	12.6	0.34	10.9	12.6	1.5	1	0	0	1	1	1	0	TATA	element	modulatory	factor	1	DNA	binding
Fib_alpha	PF08702.10	gi|433593415|ref|YP_007296156.1|	-	0.18	12.0	5.5	0.39	10.9	5.5	1.5	1	0	0	1	1	1	0	Fibrinogen	alpha/beta	chain	family
CSN5_C	PF18323.1	gi|433593415|ref|YP_007296156.1|	-	0.19	12.7	0.7	5.4	8.0	0.8	2.6	2	0	0	2	2	2	0	Cop9	signalosome	subunit	5	C-terminal	domain
FAM76	PF16046.5	gi|433593415|ref|YP_007296156.1|	-	0.23	10.8	4.0	0.37	10.1	4.0	1.3	1	0	0	1	1	1	0	FAM76	protein
WASH_WAHD	PF11945.8	gi|433593415|ref|YP_007296156.1|	-	0.27	10.7	7.2	0.39	10.2	7.2	1.2	1	0	0	1	1	1	0	WAHD	domain	of	WASH	complex
DUF724	PF05266.14	gi|433593415|ref|YP_007296156.1|	-	0.27	11.0	6.4	0.46	10.3	6.4	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF724)
Allexi_40kDa	PF05549.11	gi|433593415|ref|YP_007296156.1|	-	0.32	10.5	2.8	0.55	9.7	2.8	1.3	1	0	0	1	1	1	0	Allexivirus	40kDa	protein
DUF3584	PF12128.8	gi|433593415|ref|YP_007296156.1|	-	0.36	8.3	7.2	0.51	7.8	7.2	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3584)
TMPIT	PF07851.13	gi|433593415|ref|YP_007296156.1|	-	0.36	10.0	4.1	0.57	9.4	4.1	1.2	1	0	0	1	1	1	0	TMPIT-like	protein
Flagellin_C	PF00700.21	gi|433593415|ref|YP_007296156.1|	-	0.39	11.1	1.2	0.79	10.1	1.2	1.4	1	0	0	1	1	1	0	Bacterial	flagellin	C-terminal	helical	region
ACCA	PF03255.14	gi|433593415|ref|YP_007296156.1|	-	0.5	10.2	5.0	1.3	8.9	5.0	1.7	1	0	0	1	1	1	0	Acetyl	co-enzyme	A	carboxylase	carboxyltransferase	alpha	subunit
DUF1910	PF08928.10	gi|433593415|ref|YP_007296156.1|	-	0.66	10.0	3.8	1.7	8.6	3.8	1.7	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1910)
LUC7	PF03194.15	gi|433593415|ref|YP_007296156.1|	-	0.69	9.5	7.5	1.4	8.5	7.5	1.4	1	0	0	1	1	1	0	LUC7	N_terminus
zf-FPG_IleRS	PF06827.14	gi|433593415|ref|YP_007296156.1|	-	0.81	9.6	4.3	8.7	6.3	0.2	3.3	3	0	0	3	3	3	0	Zinc	finger	found	in	FPG	and	IleRS
ExsD	PF16806.5	gi|433593415|ref|YP_007296156.1|	-	1	9.3	5.1	14	5.6	4.3	2.1	2	0	0	2	2	2	0	Antiactivator	protein	ExsD
DUF4407	PF14362.6	gi|433593415|ref|YP_007296156.1|	-	1	8.7	3.5	1.7	7.9	3.5	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4407)
RmuC	PF02646.16	gi|433593415|ref|YP_007296156.1|	-	1.1	8.4	7.0	1.7	7.7	7.0	1.2	1	0	0	1	1	1	0	RmuC	family
FemAB	PF02388.16	gi|433593415|ref|YP_007296156.1|	-	1.1	8.0	6.1	1.7	7.4	6.1	1.1	1	0	0	1	1	1	0	FemAB	family
Fzo_mitofusin	PF04799.13	gi|433593415|ref|YP_007296156.1|	-	1.4	8.4	6.1	2.5	7.6	6.1	1.3	1	0	0	1	1	1	0	fzo-like	conserved	region
Zn-ribbon_8	PF09723.10	gi|433593415|ref|YP_007296156.1|	-	1.6	8.9	5.5	14	5.9	0.8	2.7	2	0	0	2	2	2	0	Zinc	ribbon	domain
DUF1465	PF07323.12	gi|433593415|ref|YP_007296156.1|	-	1.8	8.4	6.9	1.4	8.7	3.5	2.5	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF1465)
DUF3450	PF11932.8	gi|433593415|ref|YP_007296156.1|	-	2.1	7.6	15.5	1.5	8.1	10.5	2.6	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF3450)
DUF2203	PF09969.9	gi|433593415|ref|YP_007296156.1|	-	2.1	9.1	8.1	5.8	7.7	6.4	2.2	2	0	0	2	2	2	0	Uncharacterized	conserved	protein	(DUF2203)
V_ATPase_I	PF01496.19	gi|433593415|ref|YP_007296156.1|	-	2.3	6.1	4.9	3.2	5.6	4.9	1.1	1	0	0	1	1	1	0	V-type	ATPase	116kDa	subunit	family
MPS2	PF17060.5	gi|433593415|ref|YP_007296156.1|	-	2.4	7.4	6.1	3.7	6.7	6.1	1.2	1	0	0	1	1	1	0	Monopolar	spindle	protein	2
Kre28	PF17097.5	gi|433593415|ref|YP_007296156.1|	-	4	6.3	12.8	0.37	9.7	8.3	1.4	2	0	0	2	2	1	0	Spindle	pole	body	component
ABC_tran_CTD	PF16326.5	gi|433593415|ref|YP_007296156.1|	-	6.3	7.1	22.3	1	9.7	16.9	2.3	2	0	0	2	2	2	0	ABC	transporter	C-terminal	domain
DLP_helical	PF18709.1	gi|433593415|ref|YP_007296156.1|	-	6.7	5.8	8.2	12	5.0	8.2	1.3	1	0	0	1	1	1	0	Dynamin-like	helical	domain
HPTransfase	PF10090.9	gi|433593416|ref|YP_007296157.1|	-	0.029	14.2	0.0	0.062	13.1	0.0	1.5	1	0	0	1	1	1	0	Histidine	phosphotransferase	C-terminal	domain
YdjM	PF04307.14	gi|433593417|ref|YP_007296158.1|	-	1.7e-10	40.5	12.3	2.2e-10	40.1	12.3	1.2	1	0	0	1	1	1	1	LexA-binding,	inner	membrane-associated	putative	hydrolase
Zn_dep_PLPC	PF00882.18	gi|433593417|ref|YP_007296158.1|	-	0.056	13.4	0.0	0.11	12.5	0.0	1.4	1	1	0	1	1	1	0	Zinc	dependent	phospholipase	C
MerC	PF03203.14	gi|433593417|ref|YP_007296158.1|	-	0.38	11.2	6.0	0.14	12.6	2.0	2.1	1	1	0	2	2	2	0	MerC	mercury	resistance	protein
TFIIB	PF00382.19	gi|433593418|ref|YP_007296159.1|	-	2e-47	159.1	2.9	3e-24	84.8	0.3	2.5	2	0	0	2	2	2	2	Transcription	factor	TFIIB	repeat
TF_Zn_Ribbon	PF08271.12	gi|433593418|ref|YP_007296159.1|	-	1.4e-14	53.3	2.0	2.4e-14	52.5	2.0	1.4	1	0	0	1	1	1	1	TFIIB	zinc-binding
A2L_zn_ribbon	PF08792.10	gi|433593418|ref|YP_007296159.1|	-	0.003	17.2	1.5	0.0079	15.9	1.5	1.7	1	0	0	1	1	1	1	A2L	zinc	ribbon	domain
Sigma70_r4	PF04545.16	gi|433593418|ref|YP_007296159.1|	-	0.0067	15.9	2.5	0.097	12.2	0.1	3.4	3	1	1	4	4	4	1	Sigma-70,	region	4
OrfB_Zn_ribbon	PF07282.11	gi|433593418|ref|YP_007296159.1|	-	0.016	15.1	1.7	0.04	13.9	1.7	1.7	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
DUF2318	PF10080.9	gi|433593418|ref|YP_007296159.1|	-	0.018	15.2	0.3	0.04	14.0	0.3	1.5	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2318)
Cyclin_N	PF00134.23	gi|433593418|ref|YP_007296159.1|	-	0.027	14.2	0.0	0.057	13.2	0.0	1.6	1	0	0	1	1	1	0	Cyclin,	N-terminal	domain
DUF4503	PF14951.6	gi|433593418|ref|YP_007296159.1|	-	0.055	11.9	0.4	0.1	11.0	0.4	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4503)
Trm112p	PF03966.16	gi|433593418|ref|YP_007296159.1|	-	0.1	13.2	0.5	0.29	11.7	0.5	1.7	1	0	0	1	1	1	0	Trm112p-like	protein
RB_B	PF01857.20	gi|433593418|ref|YP_007296159.1|	-	0.11	12.5	0.0	0.35	10.9	0.0	1.9	1	1	1	2	2	2	0	Retinoblastoma-associated	protein	B	domain
zf_UBZ	PF18439.1	gi|433593418|ref|YP_007296159.1|	-	0.16	11.6	1.4	6.8	6.4	0.2	2.5	2	0	0	2	2	2	0	Ubiquitin-Binding	Zinc	Finger
Glycos_transf_2	PF00535.26	gi|433593419|ref|YP_007296160.1|	-	6.1e-25	88.0	0.0	8.4e-25	87.5	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|433593419|ref|YP_007296160.1|	-	0.00063	19.7	0.0	0.0011	18.9	0.0	1.4	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_4	PF13704.6	gi|433593419|ref|YP_007296160.1|	-	0.1	13.1	0.0	0.21	12.1	0.0	1.6	1	0	0	1	1	1	0	Glycosyl	transferase	family	2
DDE_Tnp_1	PF01609.21	gi|433593421|ref|YP_007296162.1|	-	1.9e-29	102.9	0.2	2.4e-29	102.5	0.2	1.1	1	0	0	1	1	1	1	Transposase	DDE	domain
Corona_3	PF04694.12	gi|433593421|ref|YP_007296162.1|	-	0.0056	17.0	0.0	0.018	15.3	0.0	1.8	1	0	0	1	1	1	1	Coronavirus	ORF3	protein
DDE_Tnp_1_4	PF13701.6	gi|433593421|ref|YP_007296162.1|	-	0.087	11.1	0.0	0.12	10.6	0.0	1.3	1	0	0	1	1	1	0	Transposase	DDE	domain	group	1
DDE_Tnp_IS66	PF03050.14	gi|433593423|ref|YP_007296164.1|	-	1.7e-47	162.2	0.4	1.7e-47	162.2	0.4	1.6	2	0	0	2	2	2	1	Transposase	IS66	family
Tropomyosin_1	PF12718.7	gi|433593423|ref|YP_007296164.1|	-	7.2e-06	26.2	6.5	1.5e-05	25.1	6.5	1.5	1	0	0	1	1	1	1	Tropomyosin	like
ERM	PF00769.19	gi|433593423|ref|YP_007296164.1|	-	0.00014	21.8	0.9	0.00024	21.0	0.9	1.4	1	0	0	1	1	1	1	Ezrin/radixin/moesin	family
DDE_Tnp_IS240	PF13610.6	gi|433593423|ref|YP_007296164.1|	-	0.00027	21.2	0.9	0.0016	18.7	0.0	2.3	2	1	0	2	2	2	1	DDE	domain
SlyX	PF04102.12	gi|433593423|ref|YP_007296164.1|	-	0.00095	19.7	8.4	0.0035	17.9	8.4	1.9	1	0	0	1	1	1	1	SlyX
zf-IS66	PF13005.7	gi|433593423|ref|YP_007296164.1|	-	0.0014	19.0	8.7	0.0014	19.0	8.7	2.5	3	0	0	3	3	1	1	zinc-finger	binding	domain	of	transposase	IS66
Spc7	PF08317.11	gi|433593423|ref|YP_007296164.1|	-	0.0023	16.9	4.7	0.0049	15.8	4.7	1.5	1	0	0	1	1	1	1	Spc7	kinetochore	protein
HOOK	PF05622.12	gi|433593423|ref|YP_007296164.1|	-	0.0032	15.7	7.2	0.005	15.1	7.2	1.2	1	0	0	1	1	1	1	HOOK	protein
Tmemb_cc2	PF10267.9	gi|433593423|ref|YP_007296164.1|	-	0.0037	16.5	1.0	0.0061	15.8	1.0	1.3	1	0	0	1	1	1	1	Predicted	transmembrane	and	coiled-coil	2	protein
Atg14	PF10186.9	gi|433593423|ref|YP_007296164.1|	-	0.013	14.6	3.5	0.022	13.9	3.5	1.2	1	0	0	1	1	1	0	Vacuolar	sorting	38	and	autophagy-related	subunit	14
DUF4472	PF14739.6	gi|433593423|ref|YP_007296164.1|	-	0.017	15.8	4.3	0.017	15.8	4.3	1.8	2	0	0	2	2	1	0	Domain	of	unknown	function	(DUF4472)
DUF4763	PF15960.5	gi|433593423|ref|YP_007296164.1|	-	0.025	13.9	5.2	0.048	13.0	5.2	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4763)
FmiP_Thoc5	PF09766.9	gi|433593423|ref|YP_007296164.1|	-	0.025	13.9	3.4	0.037	13.3	3.4	1.2	1	0	0	1	1	1	0	Fms-interacting	protein/Thoc5
XLF	PF09302.11	gi|433593423|ref|YP_007296164.1|	-	0.033	14.4	2.5	0.54	10.4	3.0	2.1	2	0	0	2	2	2	0	XLF-Cernunnos,	XRcc4-like	factor,	NHEJ	component
Med4	PF10018.9	gi|433593423|ref|YP_007296164.1|	-	0.044	13.4	4.6	0.086	12.5	4.6	1.4	1	0	0	1	1	1	0	Vitamin-D-receptor	interacting	Mediator	subunit	4
DUF3450	PF11932.8	gi|433593423|ref|YP_007296164.1|	-	0.058	12.7	8.6	1.3	8.3	7.3	2.5	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3450)
bZIP_1	PF00170.21	gi|433593423|ref|YP_007296164.1|	-	0.059	13.5	9.4	0.063	13.4	6.7	2.2	1	1	1	2	2	2	0	bZIP	transcription	factor
TMF_DNA_bd	PF12329.8	gi|433593423|ref|YP_007296164.1|	-	0.063	13.3	13.5	0.11	12.5	13.5	1.4	1	0	0	1	1	1	0	TATA	element	modulatory	factor	1	DNA	binding
DUF3552	PF12072.8	gi|433593423|ref|YP_007296164.1|	-	0.1	12.0	9.7	0.19	11.1	9.7	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3552)
HemX	PF04375.14	gi|433593423|ref|YP_007296164.1|	-	0.14	11.4	2.9	0.26	10.5	2.9	1.3	1	0	0	1	1	1	0	HemX,	putative	uroporphyrinogen-III	C-methyltransferase
DUF641	PF04859.12	gi|433593423|ref|YP_007296164.1|	-	0.15	12.4	7.7	0.15	12.4	6.1	1.7	2	0	0	2	2	1	0	Plant	protein	of	unknown	function	(DUF641)
Fmp27_WPPW	PF10359.9	gi|433593423|ref|YP_007296164.1|	-	0.15	10.9	3.8	0.25	10.1	3.8	1.2	1	0	0	1	1	1	0	RNA	pol	II	promoter	Fmp27	protein	domain
PKcGMP_CC	PF16808.5	gi|433593423|ref|YP_007296164.1|	-	0.16	11.8	18.8	0.23	11.4	3.1	2.4	1	1	1	2	2	2	0	Coiled-coil	N-terminus	of	cGMP-dependent	protein	kinase
PspA_IM30	PF04012.12	gi|433593423|ref|YP_007296164.1|	-	0.18	11.4	8.8	0.42	10.1	8.8	1.6	1	0	0	1	1	1	0	PspA/IM30	family
DUF4407	PF14362.6	gi|433593423|ref|YP_007296164.1|	-	0.23	10.8	2.1	0.4	10.0	2.1	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4407)
ATG16	PF08614.11	gi|433593423|ref|YP_007296164.1|	-	0.26	11.5	11.5	0.17	12.1	9.1	1.9	2	0	0	2	2	1	0	Autophagy	protein	16	(ATG16)
AAA_13	PF13166.6	gi|433593423|ref|YP_007296164.1|	-	0.27	9.8	4.2	0.4	9.3	4.2	1.2	1	0	0	1	1	1	0	AAA	domain
DUF1664	PF07889.12	gi|433593423|ref|YP_007296164.1|	-	0.29	11.2	2.4	0.64	10.1	2.4	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1664)
Csm1_N	PF18504.1	gi|433593423|ref|YP_007296164.1|	-	0.3	11.5	9.4	0.18	12.2	6.7	2.1	2	0	0	2	2	1	0	Csm1	N-terminal	domain
RPW8	PF05659.11	gi|433593423|ref|YP_007296164.1|	-	0.37	10.5	2.6	0.65	9.7	2.6	1.4	1	0	0	1	1	1	0	Arabidopsis	broad-spectrum	mildew	resistance	protein	RPW8
FlaC_arch	PF05377.11	gi|433593423|ref|YP_007296164.1|	-	0.4	11.1	5.6	0.9	10.0	5.6	1.6	1	0	0	1	1	1	0	Flagella	accessory	protein	C	(FlaC)
DUF812	PF05667.11	gi|433593423|ref|YP_007296164.1|	-	0.41	9.5	6.6	0.63	8.9	6.6	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF812)
Spc24	PF08286.11	gi|433593423|ref|YP_007296164.1|	-	0.48	10.7	4.5	1.2	9.4	4.5	1.7	1	0	0	1	1	1	0	Spc24	subunit	of	Ndc80
FemAB	PF02388.16	gi|433593423|ref|YP_007296164.1|	-	0.53	9.1	4.1	0.78	8.5	4.1	1.1	1	0	0	1	1	1	0	FemAB	family
DUF4200	PF13863.6	gi|433593423|ref|YP_007296164.1|	-	0.59	10.6	14.9	0.054	13.9	10.0	1.7	2	0	0	2	2	1	0	Domain	of	unknown	function	(DUF4200)
MctB	PF11382.8	gi|433593423|ref|YP_007296164.1|	-	0.87	9.2	3.5	1.7	8.3	3.5	1.4	1	0	0	1	1	1	0	Copper	transport	outer	membrane	protein,	MctB
TMPIT	PF07851.13	gi|433593423|ref|YP_007296164.1|	-	1.4	8.1	3.2	2.4	7.3	3.2	1.2	1	0	0	1	1	1	0	TMPIT-like	protein
TMF_TATA_bd	PF12325.8	gi|433593423|ref|YP_007296164.1|	-	1.9	8.7	12.6	2.1	8.6	11.1	1.7	2	0	0	2	2	1	0	TATA	element	modulatory	factor	1	TATA	binding
ABC_tran_CTD	PF16326.5	gi|433593423|ref|YP_007296164.1|	-	3.4	8.0	14.0	1.8	8.9	10.1	2.4	2	0	0	2	2	2	0	ABC	transporter	C-terminal	domain
GrpE	PF01025.19	gi|433593423|ref|YP_007296164.1|	-	3.4	7.3	7.7	7.6	6.2	7.7	1.5	1	0	0	1	1	1	0	GrpE
ZapB	PF06005.12	gi|433593423|ref|YP_007296164.1|	-	10	6.7	16.5	8.7	6.9	13.1	2.5	2	0	0	2	2	2	0	Cell	division	protein	ZapB
DDE_Tnp_1	PF01609.21	gi|433593424|ref|YP_007296165.1|	-	3.2e-10	40.0	3.3	4.9e-10	39.4	3.3	1.2	1	0	0	1	1	1	1	Transposase	DDE	domain
DUF772	PF05598.11	gi|433593424|ref|YP_007296165.1|	-	0.17	11.9	0.5	0.48	10.5	0.3	1.9	2	0	0	2	2	2	0	Transposase	domain	(DUF772)
DDE_Tnp_1	PF01609.21	gi|433593425|ref|YP_007296166.1|	-	4.4e-27	95.1	0.0	6.1e-27	94.7	0.0	1.2	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_2	PF04693.12	gi|433593425|ref|YP_007296166.1|	-	0.0015	17.9	0.1	0.0022	17.3	0.1	1.2	1	0	0	1	1	1	1	Archaeal	putative	transposase	ISC1217
DDE_Tnp_1_4	PF13701.6	gi|433593425|ref|YP_007296166.1|	-	0.11	10.7	0.0	0.16	10.2	0.0	1.2	1	0	0	1	1	1	0	Transposase	DDE	domain	group	1
Elong_Iki1	PF10483.9	gi|433593426|ref|YP_007296167.1|	-	0.064	12.7	0.0	0.073	12.6	0.0	1.1	1	0	0	1	1	1	0	Elongator	subunit	Iki1
DDE_Tnp_IS66	PF03050.14	gi|433593427|ref|YP_007296168.1|	-	6.2e-49	167.0	0.2	6.2e-49	167.0	0.2	1.7	2	0	0	2	2	2	1	Transposase	IS66	family
zf-IS66	PF13005.7	gi|433593427|ref|YP_007296168.1|	-	1.7e-05	25.1	4.6	5.1e-05	23.6	4.6	1.9	1	0	0	1	1	1	1	zinc-finger	binding	domain	of	transposase	IS66
bZIP_1	PF00170.21	gi|433593427|ref|YP_007296168.1|	-	0.00031	20.8	6.0	0.0006	19.9	6.0	1.5	1	0	0	1	1	1	1	bZIP	transcription	factor
GAS	PF13851.6	gi|433593427|ref|YP_007296168.1|	-	0.00065	19.1	5.1	0.0013	18.2	5.1	1.3	1	0	0	1	1	1	1	Growth-arrest	specific	micro-tubule	binding
Tropomyosin_1	PF12718.7	gi|433593427|ref|YP_007296168.1|	-	0.0024	18.0	3.9	0.0053	16.9	3.9	1.5	1	0	0	1	1	1	1	Tropomyosin	like
Csm1_N	PF18504.1	gi|433593427|ref|YP_007296168.1|	-	0.003	17.9	2.6	0.0082	16.5	2.6	1.8	1	0	0	1	1	1	1	Csm1	N-terminal	domain
MCC-bdg_PDZ	PF10506.9	gi|433593427|ref|YP_007296168.1|	-	0.008	16.2	3.9	0.019	15.0	3.9	1.7	1	0	0	1	1	1	1	PDZ	domain	of	MCC-2	bdg	protein	for	Usher	syndrome
CENP-F_leu_zip	PF10473.9	gi|433593427|ref|YP_007296168.1|	-	0.013	15.5	8.3	0.031	14.3	8.3	1.6	1	0	0	1	1	1	0	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
Taxilin	PF09728.9	gi|433593427|ref|YP_007296168.1|	-	0.03	13.5	4.9	0.048	12.8	4.9	1.2	1	0	0	1	1	1	0	Myosin-like	coiled-coil	protein
Ead_Ea22	PF13935.6	gi|433593427|ref|YP_007296168.1|	-	0.042	14.5	1.9	0.083	13.5	0.2	2.4	2	0	0	2	2	2	0	Ead/Ea22-like	protein
Shugoshin_N	PF07558.11	gi|433593427|ref|YP_007296168.1|	-	0.064	13.1	2.9	0.13	12.1	2.9	1.5	1	0	0	1	1	1	0	Shugoshin	N-terminal	coiled-coil	region
Spc24	PF08286.11	gi|433593427|ref|YP_007296168.1|	-	0.08	13.2	2.2	0.19	12.0	2.0	1.7	2	0	0	2	2	1	0	Spc24	subunit	of	Ndc80
DDE_Tnp_IS240	PF13610.6	gi|433593427|ref|YP_007296168.1|	-	0.092	13.0	1.3	0.14	12.4	0.0	2.0	2	1	0	2	2	1	0	DDE	domain
CCDC106	PF15794.5	gi|433593427|ref|YP_007296168.1|	-	0.1	12.3	2.7	0.19	11.4	2.7	1.3	1	0	0	1	1	1	0	Coiled-coil	domain-containing	protein	106
YabA	PF06156.13	gi|433593427|ref|YP_007296168.1|	-	0.14	12.8	1.4	0.37	11.4	1.4	1.7	1	0	0	1	1	1	0	Initiation	control	protein	YabA
TMF_DNA_bd	PF12329.8	gi|433593427|ref|YP_007296168.1|	-	0.15	12.0	7.1	0.36	10.9	7.1	1.6	1	0	0	1	1	1	0	TATA	element	modulatory	factor	1	DNA	binding
APC_N_CC	PF16689.5	gi|433593427|ref|YP_007296168.1|	-	0.18	11.9	7.5	0.52	10.4	7.5	1.8	1	0	0	1	1	1	0	Coiled-coil	N-terminus	of	APC,	dimerisation	domain
DUF4472	PF14739.6	gi|433593427|ref|YP_007296168.1|	-	0.18	12.6	6.5	0.099	13.4	2.6	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4472)
FTA4	PF13093.6	gi|433593427|ref|YP_007296168.1|	-	0.19	11.6	3.9	1.9	8.3	1.0	2.5	2	1	0	2	2	2	0	Kinetochore	complex	Fta4	of	Sim4	subunit,	or	CENP-50
bZIP_2	PF07716.15	gi|433593427|ref|YP_007296168.1|	-	0.22	11.6	8.5	0.32	11.1	7.2	2.0	1	1	0	1	1	1	0	Basic	region	leucine	zipper
MPS2	PF17060.5	gi|433593427|ref|YP_007296168.1|	-	0.26	10.5	4.6	0.48	9.6	4.6	1.3	1	0	0	1	1	1	0	Monopolar	spindle	protein	2
zf-FPG_IleRS	PF06827.14	gi|433593427|ref|YP_007296168.1|	-	0.3	11.0	4.4	11	6.0	0.2	3.2	3	0	0	3	3	3	0	Zinc	finger	found	in	FPG	and	IleRS
JIP_LZII	PF16471.5	gi|433593427|ref|YP_007296168.1|	-	0.4	10.9	8.7	1.1	9.5	8.7	1.7	1	0	0	1	1	1	0	JNK-interacting	protein	leucine	zipper	II
NYD-SP28_assoc	PF14775.6	gi|433593427|ref|YP_007296168.1|	-	0.48	10.6	5.4	2	8.6	5.4	2.1	1	0	0	1	1	1	0	Sperm	tail	C-terminal	domain
TolA_bind_tri	PF16331.5	gi|433593427|ref|YP_007296168.1|	-	0.91	9.7	11.4	0.84	9.8	9.0	2.1	2	0	0	2	2	2	0	TolA	binding	protein	trimerisation
AAA_13	PF13166.6	gi|433593427|ref|YP_007296168.1|	-	1	8.0	2.4	1.5	7.4	2.4	1.2	1	0	0	1	1	1	0	AAA	domain
TMF_TATA_bd	PF12325.8	gi|433593427|ref|YP_007296168.1|	-	1.1	9.5	13.3	0.28	11.4	9.7	1.8	2	0	0	2	2	1	0	TATA	element	modulatory	factor	1	TATA	binding
TSC22	PF01166.18	gi|433593427|ref|YP_007296168.1|	-	1.1	9.6	8.3	3.5	8.0	5.3	3.0	2	1	1	3	3	2	0	TSC-22/dip/bun	family
Spc7	PF08317.11	gi|433593427|ref|YP_007296168.1|	-	1.6	7.5	7.5	0.38	9.6	2.2	2.0	2	0	0	2	2	2	0	Spc7	kinetochore	protein
DUF4407	PF14362.6	gi|433593427|ref|YP_007296168.1|	-	1.8	7.8	4.7	0.44	9.9	0.7	1.9	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4407)
ATG16	PF08614.11	gi|433593427|ref|YP_007296168.1|	-	3.5	7.8	14.1	0.044	14.0	5.5	2.1	3	0	0	3	3	2	0	Autophagy	protein	16	(ATG16)
betaPIX_CC	PF16523.5	gi|433593427|ref|YP_007296168.1|	-	3.9	7.4	8.9	3.4	7.6	3.9	2.3	2	0	0	2	2	2	0	betaPIX	coiled	coil
ZapB	PF06005.12	gi|433593427|ref|YP_007296168.1|	-	4.4	7.8	13.3	2	8.9	9.0	2.4	2	0	0	2	2	2	0	Cell	division	protein	ZapB
PKcGMP_CC	PF16808.5	gi|433593427|ref|YP_007296168.1|	-	8	6.4	14.7	0.79	9.6	4.4	2.8	1	1	1	2	2	2	0	Coiled-coil	N-terminus	of	cGMP-dependent	protein	kinase
MacB_PCD	PF12704.7	gi|433593429|ref|YP_007296170.1|	-	6.2e-20	72.4	4.3	6.2e-20	72.4	4.3	2.4	2	1	0	2	2	2	1	MacB-like	periplasmic	core	domain
FtsX	PF02687.21	gi|433593429|ref|YP_007296170.1|	-	0.0004	20.8	5.8	0.0004	20.8	5.8	3.2	3	0	0	3	3	3	1	FtsX-like	permease	family
RskA	PF10099.9	gi|433593429|ref|YP_007296170.1|	-	0.21	11.8	3.1	0.76	10.0	0.5	2.4	2	0	0	2	2	2	0	Anti-sigma-K	factor	rskA
FtsX	PF02687.21	gi|433593430|ref|YP_007296171.1|	-	2.9e-05	24.4	12.7	0.0077	16.7	7.7	3.2	3	0	0	3	3	3	2	FtsX-like	permease	family
ABC_tran	PF00005.27	gi|433593431|ref|YP_007296172.1|	-	3.1e-35	121.7	0.0	4.2e-35	121.2	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|433593431|ref|YP_007296172.1|	-	1.2e-06	28.6	0.6	0.015	15.1	0.3	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|433593431|ref|YP_007296172.1|	-	1.3e-05	24.8	0.1	0.0016	17.9	0.0	2.1	2	0	0	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.6	gi|433593431|ref|YP_007296172.1|	-	0.00042	20.0	0.1	0.00084	19.0	0.1	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_16	PF13191.6	gi|433593431|ref|YP_007296172.1|	-	0.0014	19.0	1.4	0.0025	18.2	1.4	1.5	1	1	0	1	1	1	1	AAA	ATPase	domain
RsgA_GTPase	PF03193.16	gi|433593431|ref|YP_007296172.1|	-	0.0024	17.8	0.1	0.0039	17.1	0.1	1.4	1	0	0	1	1	1	1	RsgA	GTPase
AAA_18	PF13238.6	gi|433593431|ref|YP_007296172.1|	-	0.013	16.0	0.4	0.043	14.4	0.4	2.0	2	1	0	2	2	2	0	AAA	domain
IstB_IS21	PF01695.17	gi|433593431|ref|YP_007296172.1|	-	0.027	14.2	0.0	0.73	9.5	0.0	2.2	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
Rad17	PF03215.15	gi|433593431|ref|YP_007296172.1|	-	0.036	14.0	0.0	0.056	13.4	0.0	1.3	1	0	0	1	1	1	0	Rad17	P-loop	domain
AAA_33	PF13671.6	gi|433593431|ref|YP_007296172.1|	-	0.044	14.0	0.8	0.083	13.1	0.2	1.8	2	1	0	2	2	2	0	AAA	domain
AAA_30	PF13604.6	gi|433593431|ref|YP_007296172.1|	-	0.044	13.5	1.0	0.19	11.4	1.0	1.9	1	1	0	1	1	1	0	AAA	domain
SRP54	PF00448.22	gi|433593431|ref|YP_007296172.1|	-	0.047	13.3	0.0	0.62	9.7	0.0	2.1	2	0	0	2	2	2	0	SRP54-type	protein,	GTPase	domain
SbcCD_C	PF13558.6	gi|433593431|ref|YP_007296172.1|	-	0.14	12.5	0.1	2.8	8.3	0.1	2.4	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
AAA_23	PF13476.6	gi|433593431|ref|YP_007296172.1|	-	0.18	12.3	0.1	0.32	11.5	0.1	1.3	1	0	0	1	1	1	0	AAA	domain
Adeno_IVa2	PF02456.15	gi|433593431|ref|YP_007296172.1|	-	0.27	10.0	0.0	0.38	9.5	0.0	1.1	1	0	0	1	1	1	0	Adenovirus	IVa2	protein
PKD	PF00801.20	gi|433593433|ref|YP_007296174.1|	-	1e-08	34.9	0.5	1e-08	34.9	0.5	2.8	3	0	0	3	3	3	1	PKD	domain
Ig_3	PF13927.6	gi|433593433|ref|YP_007296174.1|	-	0.00011	22.7	5.1	0.21	12.2	0.1	3.6	3	0	0	3	3	3	2	Immunoglobulin	domain
PGF-CTERM	PF18204.1	gi|433593433|ref|YP_007296174.1|	-	0.00095	19.1	2.7	0.00095	19.1	2.7	1.7	2	0	0	2	2	2	1	PGF-CTERM	motif
ChitinaseA_N	PF08329.10	gi|433593433|ref|YP_007296174.1|	-	0.0073	16.0	0.5	0.19	11.4	0.2	2.7	2	0	0	2	2	2	1	Chitinase	A,	N-terminal	domain
Ig_2	PF13895.6	gi|433593433|ref|YP_007296174.1|	-	0.013	15.8	0.6	0.066	13.6	0.1	2.5	3	0	0	3	3	3	0	Immunoglobulin	domain
CENP-B_dimeris	PF09026.10	gi|433593433|ref|YP_007296174.1|	-	0.021	15.2	0.0	0.021	15.2	0.0	2.9	3	0	0	3	3	3	0	Centromere	protein	B	dimerisation	domain
PKD_3	PF16820.5	gi|433593433|ref|YP_007296174.1|	-	0.071	12.9	1.7	0.23	11.2	0.5	2.3	2	0	0	2	2	2	0	PKD-like	domain
DUF11	PF01345.18	gi|433593433|ref|YP_007296174.1|	-	0.47	10.8	11.5	4.4	7.7	0.1	4.2	4	1	0	4	4	4	0	Domain	of	unknown	function	DUF11
DUF58	PF01882.18	gi|433593434|ref|YP_007296175.1|	-	3.8e-22	78.4	1.8	6.5e-22	77.6	0.1	2.2	2	0	0	2	2	2	1	Protein	of	unknown	function	DUF58
CAP_N	PF01213.19	gi|433593434|ref|YP_007296175.1|	-	0.24	10.8	0.1	0.38	10.2	0.1	1.2	1	0	0	1	1	1	0	Adenylate	cyclase	associated	(CAP)	N	terminal
BaxI_1	PF12811.7	gi|433593435|ref|YP_007296176.1|	-	0.22	11.1	9.5	0.16	11.5	8.0	1.5	1	1	0	1	1	1	0	Bax	inhibitor	1	like
PhoR	PF11808.8	gi|433593435|ref|YP_007296176.1|	-	1.2	9.6	11.0	0.21	12.0	0.4	2.6	2	1	1	3	3	3	0	Phosphate	regulon	sensor	protein	PhoR
Tmemb_14	PF03647.13	gi|433593435|ref|YP_007296176.1|	-	4	8.3	14.6	0.27	12.0	2.3	2.5	1	1	1	2	2	2	0	Transmembrane	proteins	14C
ApoO	PF09769.9	gi|433593436|ref|YP_007296177.1|	-	0.00012	22.0	0.4	0.00025	21.0	0.4	1.5	1	1	0	1	1	1	1	Apolipoprotein	O
DUF2157	PF09925.9	gi|433593436|ref|YP_007296177.1|	-	2	8.2	4.8	7.6	6.3	4.8	1.8	1	1	0	1	1	1	0	Predicted	membrane	protein	(DUF2157)
zf-dskA_traR	PF01258.17	gi|433593440|ref|YP_007296181.1|	-	0.0022	17.9	0.9	0.0031	17.4	0.9	1.3	1	0	0	1	1	1	1	Prokaryotic	dksA/traR	C4-type	zinc	finger
DUF2387	PF09526.10	gi|433593440|ref|YP_007296181.1|	-	0.093	12.9	0.5	0.15	12.2	0.5	1.5	1	1	0	1	1	1	0	Probable	metal-binding	protein	(DUF2387)
TFIIS_C	PF01096.18	gi|433593440|ref|YP_007296181.1|	-	0.11	12.4	0.1	0.11	12.4	0.1	1.8	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
GBS_Bsp-like	PF08481.10	gi|433593441|ref|YP_007296182.1|	-	0.00073	19.6	0.7	0.0045	17.1	0.0	2.2	2	0	0	2	2	2	1	GBS	Bsp-like	repeat
Flavi_NS2B	PF01002.19	gi|433593441|ref|YP_007296182.1|	-	0.96	9.3	2.9	5.3	6.9	0.7	2.3	2	0	0	2	2	2	0	Flavivirus	non-structural	protein	NS2B
DUF922	PF06037.11	gi|433593444|ref|YP_007296185.1|	-	0.098	12.4	0.0	0.23	11.3	0.0	1.6	1	0	0	1	1	1	0	Bacterial	protein	of	unknown	function	(DUF922)
DDE_Tnp_1	PF01609.21	gi|433593445|ref|YP_007296186.1|	-	3.2e-10	40.0	3.3	4.9e-10	39.4	3.3	1.2	1	0	0	1	1	1	1	Transposase	DDE	domain
DUF772	PF05598.11	gi|433593445|ref|YP_007296186.1|	-	0.17	11.9	0.5	0.48	10.5	0.3	1.9	2	0	0	2	2	2	0	Transposase	domain	(DUF772)
HATPase_c_3	PF13589.6	gi|433593446|ref|YP_007296187.1|	-	5.4e-06	26.3	0.1	8.8e-06	25.6	0.1	1.3	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
TrmB	PF01978.19	gi|433593447|ref|YP_007296188.1|	-	6.2e-08	32.4	0.0	1.1e-07	31.7	0.0	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_24	PF13412.6	gi|433593447|ref|YP_007296188.1|	-	0.00023	20.6	0.0	0.00055	19.4	0.0	1.7	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
Cdc6_C	PF09079.11	gi|433593447|ref|YP_007296188.1|	-	0.002	18.1	0.0	0.0034	17.3	0.0	1.4	1	0	0	1	1	1	1	CDC6,	C	terminal	winged	helix	domain
HTH_20	PF12840.7	gi|433593447|ref|YP_007296188.1|	-	0.0071	16.4	0.0	0.017	15.2	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR_2	PF12802.7	gi|433593447|ref|YP_007296188.1|	-	0.0086	16.0	0.0	0.018	14.9	0.0	1.6	1	0	0	1	1	1	1	MarR	family
HTH_27	PF13463.6	gi|433593447|ref|YP_007296188.1|	-	0.012	16.1	0.0	0.024	15.1	0.0	1.5	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
Penicillinase_R	PF03965.16	gi|433593447|ref|YP_007296188.1|	-	0.019	15.3	0.0	0.029	14.7	0.0	1.3	1	0	0	1	1	1	0	Penicillinase	repressor
HTH_11	PF08279.12	gi|433593447|ref|YP_007296188.1|	-	0.02	14.9	0.0	0.037	14.0	0.0	1.5	1	0	0	1	1	1	0	HTH	domain
Rrf2	PF02082.20	gi|433593447|ref|YP_007296188.1|	-	0.022	15.1	0.0	0.27	11.6	0.0	2.1	2	0	0	2	2	2	0	Transcriptional	regulator
HTH_IclR	PF09339.10	gi|433593447|ref|YP_007296188.1|	-	0.024	14.4	0.0	0.09	12.6	0.0	1.9	2	0	0	2	2	2	0	IclR	helix-turn-helix	domain
FaeA	PF04703.12	gi|433593447|ref|YP_007296188.1|	-	0.025	14.9	0.0	0.053	13.9	0.0	1.5	1	0	0	1	1	1	0	FaeA-like	protein
DUF4423	PF14394.6	gi|433593447|ref|YP_007296188.1|	-	0.025	14.3	0.0	0.035	13.8	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4423)
HTH_29	PF13551.6	gi|433593447|ref|YP_007296188.1|	-	0.096	12.7	0.1	0.48	10.5	0.0	2.2	2	1	1	3	3	3	0	Winged	helix-turn	helix
HTH_43	PF09904.9	gi|433593447|ref|YP_007296188.1|	-	0.1	12.6	0.1	0.28	11.2	0.0	1.7	1	1	1	2	2	2	0	Winged	helix-turn	helix
E2F_TDP	PF02319.20	gi|433593447|ref|YP_007296188.1|	-	0.1	12.7	0.0	0.19	11.8	0.0	1.5	1	0	0	1	1	1	0	E2F/DP	family	winged-helix	DNA-binding	domain
PIN_12	PF16289.5	gi|433593448|ref|YP_007296189.1|	-	0.032	14.7	0.0	0.062	13.8	0.0	1.6	1	1	0	1	1	1	0	PIN	domain
DDE_Tnp_1	PF01609.21	gi|433593449|ref|YP_007296190.1|	-	5.1e-20	72.0	0.0	7e-20	71.6	0.0	1.1	1	0	0	1	1	1	1	Transposase	DDE	domain
DUF772	PF05598.11	gi|433593449|ref|YP_007296190.1|	-	0.0008	19.4	0.0	0.0015	18.5	0.0	1.4	1	0	0	1	1	1	1	Transposase	domain	(DUF772)
HalOD1	PF18545.1	gi|433593450|ref|YP_007296191.1|	-	3.4e-07	30.4	0.1	3.4e-07	30.4	0.1	1.1	1	0	0	1	1	1	1	Halobacterial	output	domain	1
UBA	PF00627.31	gi|433593450|ref|YP_007296191.1|	-	0.12	12.3	0.4	2.3	8.2	0.1	2.1	2	0	0	2	2	2	0	UBA/TS-N	domain
Peptidase_M78	PF06114.13	gi|433593451|ref|YP_007296192.1|	-	0.001	19.0	0.0	0.0018	18.2	0.0	1.4	1	0	0	1	1	1	1	IrrE	N-terminal-like	domain
SprT-like	PF10263.9	gi|433593451|ref|YP_007296192.1|	-	0.055	13.3	0.0	0.3	11.0	0.0	2.0	2	0	0	2	2	2	0	SprT-like	family
TetR_C_15	PF17918.1	gi|433593451|ref|YP_007296192.1|	-	0.1	13.4	0.8	1.1	10.1	0.1	2.4	2	0	0	2	2	2	0	Tetracyclin	repressor-like,	C-terminal	domain
HTH_7	PF02796.15	gi|433593453|ref|YP_007296194.1|	-	9.7e-07	28.8	0.0	2.1e-06	27.7	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain	of	resolvase
TrmB	PF01978.19	gi|433593453|ref|YP_007296194.1|	-	0.00011	22.0	0.0	0.00026	20.8	0.0	1.7	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.7	gi|433593453|ref|YP_007296194.1|	-	0.00041	20.2	0.2	0.0011	18.8	0.0	1.8	2	0	0	2	2	2	1	MarR	family
HTH_11	PF08279.12	gi|433593453|ref|YP_007296194.1|	-	0.00063	19.6	0.5	0.0039	17.1	0.0	2.4	3	0	0	3	3	3	1	HTH	domain
GntR	PF00392.21	gi|433593453|ref|YP_007296194.1|	-	0.00075	19.1	0.6	0.0044	16.6	0.1	2.3	2	1	0	2	2	2	1	Bacterial	regulatory	proteins,	gntR	family
HTH_Crp_2	PF13545.6	gi|433593453|ref|YP_007296194.1|	-	0.0013	18.6	0.2	0.0084	16.1	0.0	2.2	2	0	0	2	2	2	1	Crp-like	helix-turn-helix	domain
HTH_20	PF12840.7	gi|433593453|ref|YP_007296194.1|	-	0.006	16.6	0.1	0.02	14.9	0.0	1.9	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_23	PF13384.6	gi|433593453|ref|YP_007296194.1|	-	0.016	15.0	0.0	0.038	13.8	0.0	1.6	1	0	0	1	1	1	0	Homeodomain-like	domain
HEPN-like_int	PF18867.1	gi|433593453|ref|YP_007296194.1|	-	0.045	13.6	0.4	0.068	13.0	0.4	1.2	1	0	0	1	1	1	0	HEPN-like	integron	domain
Rrf2	PF02082.20	gi|433593453|ref|YP_007296194.1|	-	0.052	13.9	0.0	0.56	10.6	0.0	2.2	2	0	0	2	2	2	0	Transcriptional	regulator
UPF0122	PF04297.14	gi|433593453|ref|YP_007296194.1|	-	0.064	13.5	1.6	0.72	10.1	0.6	2.7	1	1	0	2	2	2	0	Putative	helix-turn-helix	protein,	YlxM	/	p13	like
HTH_IclR	PF09339.10	gi|433593453|ref|YP_007296194.1|	-	0.067	13.0	0.0	0.13	12.1	0.0	1.5	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
WXG100	PF06013.12	gi|433593453|ref|YP_007296194.1|	-	0.07	13.4	2.9	0.39	11.0	0.7	2.3	2	1	0	2	2	2	0	Proteins	of	100	residues	with	WXG
TryThrA_C	PF12319.8	gi|433593453|ref|YP_007296194.1|	-	0.082	12.4	0.0	0.13	11.8	0.0	1.2	1	0	0	1	1	1	0	Tryptophan-Threonine-rich	plasmodium	antigen	C	terminal
Histone_HNS	PF00816.21	gi|433593453|ref|YP_007296194.1|	-	0.085	13.7	1.7	0.19	12.6	1.7	1.7	1	0	0	1	1	1	0	H-NS	histone	family
Fe_dep_repress	PF01325.19	gi|433593453|ref|YP_007296194.1|	-	0.12	12.6	0.0	0.22	11.7	0.0	1.4	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
Mobilization_B	PF17511.2	gi|433593453|ref|YP_007296194.1|	-	0.12	12.8	0.7	0.19	12.1	0.2	1.5	2	0	0	2	2	2	0	Mobilization	protein	B
TetR_N	PF00440.23	gi|433593453|ref|YP_007296194.1|	-	0.13	12.1	0.0	0.26	11.1	0.0	1.5	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	tetR	family
HalX	PF08663.10	gi|433593453|ref|YP_007296194.1|	-	1.9	8.9	13.4	1.9	8.9	0.7	2.6	2	1	0	2	2	2	0	HalX	domain
Noc2	PF03715.13	gi|433593454|ref|YP_007296195.1|	-	0.1	11.8	0.0	0.18	11.0	0.0	1.3	1	0	0	1	1	1	0	Noc2p	family
TBP	PF00352.21	gi|433593455|ref|YP_007296196.1|	-	8.7e-53	176.2	0.0	1.2e-25	89.3	0.0	2.0	2	0	0	2	2	2	2	Transcription	factor	TFIID	(or	TATA-binding	protein,	TBP)
DUF3378	PF11858.8	gi|433593455|ref|YP_007296196.1|	-	1.6e-06	28.1	0.0	0.01	15.9	0.0	2.2	2	0	0	2	2	2	2	Domain	of	unknown	function	(DUF3378)
T4bSS_IcmS	PF12608.8	gi|433593455|ref|YP_007296196.1|	-	0.005	17.1	0.0	0.76	10.1	0.0	2.2	2	0	0	2	2	2	2	Type	IVb	secretion,	IcmS,	effector-recruitment
A2L_zn_ribbon	PF08792.10	gi|433593456|ref|YP_007296197.1|	-	0.0049	16.5	1.9	0.0064	16.2	1.9	1.2	1	0	0	1	1	1	1	A2L	zinc	ribbon	domain
Sgf11	PF08209.11	gi|433593456|ref|YP_007296197.1|	-	0.0079	15.7	3.8	0.055	13.0	0.2	2.2	2	0	0	2	2	2	1	Sgf11	(transcriptional	regulation	protein)
Zn_Tnp_IS91	PF14319.6	gi|433593456|ref|YP_007296197.1|	-	0.0083	16.1	3.6	0.0084	16.1	3.6	1.0	1	0	0	1	1	1	1	Transposase	zinc-binding	domain
DZR	PF12773.7	gi|433593456|ref|YP_007296197.1|	-	0.0089	16.0	1.1	0.0098	15.9	1.1	1.2	1	0	0	1	1	1	1	Double	zinc	ribbon
HypA	PF01155.19	gi|433593456|ref|YP_007296197.1|	-	0.017	15.1	1.1	0.017	15.1	1.1	1.0	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zf-Mss51	PF13824.6	gi|433593456|ref|YP_007296197.1|	-	0.037	14.1	2.9	1.7	8.8	0.3	2.0	1	1	1	2	2	2	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
zinc-ribbon_6	PF10005.9	gi|433593456|ref|YP_007296197.1|	-	0.045	14.4	1.6	0.047	14.4	1.6	1.1	1	0	0	1	1	1	0	zinc-ribbon	domain
zinc_ribbon_2	PF13240.6	gi|433593456|ref|YP_007296197.1|	-	0.066	13.0	4.6	0.22	11.3	4.6	1.8	1	1	0	1	1	1	0	zinc-ribbon	domain
Vps36-NZF-N	PF16988.5	gi|433593456|ref|YP_007296197.1|	-	0.066	12.6	0.9	2.3	7.7	0.0	2.0	1	1	1	2	2	2	0	Vacuolar	protein	sorting	36	NZF-N	zinc-finger	domain
TF_Zn_Ribbon	PF08271.12	gi|433593456|ref|YP_007296197.1|	-	0.082	12.4	3.5	0.16	11.5	3.5	1.4	1	1	0	1	1	1	0	TFIIB	zinc-binding
zf-C2H2_11	PF16622.5	gi|433593456|ref|YP_007296197.1|	-	0.14	11.9	4.2	1.2	8.9	0.2	2.2	2	0	0	2	2	2	0	zinc-finger	C2H2-type
DUF1451	PF07295.11	gi|433593456|ref|YP_007296197.1|	-	0.16	12.0	2.8	0.16	12.0	2.8	1.0	1	0	0	1	1	1	0	Zinc-ribbon	containing	domain
Ribosomal_L37e	PF01907.19	gi|433593456|ref|YP_007296197.1|	-	0.19	11.9	7.3	0.29	11.3	7.3	1.4	1	1	0	1	1	1	0	Ribosomal	protein	L37e
Zn-ribbon_8	PF09723.10	gi|433593456|ref|YP_007296197.1|	-	0.2	11.8	3.9	0.51	10.5	3.9	1.6	1	1	0	1	1	1	0	Zinc	ribbon	domain
DUF2800	PF10926.8	gi|433593457|ref|YP_007296198.1|	-	0.002	17.4	0.0	0.0035	16.7	0.0	1.3	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF2800)
DivIC	PF04977.15	gi|433593457|ref|YP_007296198.1|	-	0.026	14.3	0.4	0.12	12.2	0.3	2.1	2	0	0	2	2	2	0	Septum	formation	initiator
ABC_tran_CTD	PF16326.5	gi|433593457|ref|YP_007296198.1|	-	0.028	14.7	1.6	0.083	13.2	1.6	1.8	1	0	0	1	1	1	0	ABC	transporter	C-terminal	domain
DUF2383	PF09537.10	gi|433593457|ref|YP_007296198.1|	-	0.028	14.7	1.6	0.065	13.6	0.3	2.0	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF2383)
DDE_Tnp_IS1595	PF12762.7	gi|433593459|ref|YP_007296200.1|	-	2.5e-21	76.3	0.0	4.1e-21	75.6	0.0	1.4	1	0	0	1	1	1	1	ISXO2-like	transposase	domain
Zn_Tnp_IS1595	PF12760.7	gi|433593459|ref|YP_007296200.1|	-	3.2e-10	39.8	0.9	6.4e-10	38.8	0.9	1.6	1	0	0	1	1	1	1	Transposase	zinc-ribbon	domain
Zn_Tnp_IS1	PF03811.13	gi|433593459|ref|YP_007296200.1|	-	6.1e-05	22.7	4.6	0.00014	21.5	4.6	1.6	1	0	0	1	1	1	1	InsA	N-terminal	domain
DUF2089	PF09862.9	gi|433593459|ref|YP_007296200.1|	-	0.0098	15.9	0.1	0.017	15.2	0.1	1.4	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF2089)
Zn-ribbon_8	PF09723.10	gi|433593459|ref|YP_007296200.1|	-	0.041	14.0	0.7	11	6.3	0.0	2.5	2	0	0	2	2	2	0	Zinc	ribbon	domain
zf-C4_Topoisom	PF01396.19	gi|433593459|ref|YP_007296200.1|	-	0.19	11.5	2.4	0.39	10.6	2.4	1.5	1	0	0	1	1	1	0	Topoisomerase	DNA	binding	C4	zinc	finger
zf-Dof	PF02701.15	gi|433593459|ref|YP_007296200.1|	-	0.21	11.8	5.4	0.46	10.7	5.4	1.6	1	1	0	1	1	1	0	Dof	domain,	zinc	finger
zf-ISL3	PF14690.6	gi|433593459|ref|YP_007296200.1|	-	0.68	10.7	8.6	1.2	9.9	1.0	2.7	2	0	0	2	2	2	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
bPH_2	PF03703.14	gi|433593460|ref|YP_007296201.1|	-	5.7e-11	42.5	0.0	9.4e-11	41.8	0.0	1.4	1	0	0	1	1	1	1	Bacterial	PH	domain
PQQ_2	PF13360.6	gi|433593462|ref|YP_007296203.1|	-	2.3e-43	148.5	11.0	1.7e-28	99.8	5.3	3.1	1	1	2	3	3	3	3	PQQ-like	domain
PQQ_3	PF13570.6	gi|433593462|ref|YP_007296203.1|	-	2.1e-19	69.4	23.3	0.00023	21.5	0.2	8.5	9	0	0	9	9	9	5	PQQ-like	domain
PQQ	PF01011.21	gi|433593462|ref|YP_007296203.1|	-	3.3e-16	58.3	9.1	0.011	15.7	0.0	6.4	7	0	0	7	7	7	4	PQQ	enzyme	repeat
DDE_Tnp_1	PF01609.21	gi|433593464|ref|YP_007296205.1|	-	3.2e-22	79.3	0.0	8.6e-22	77.8	0.0	1.7	1	1	0	1	1	1	1	Transposase	DDE	domain
DUF772	PF05598.11	gi|433593464|ref|YP_007296205.1|	-	8.4e-07	28.9	0.0	2.3e-06	27.5	0.0	1.7	1	0	0	1	1	1	1	Transposase	domain	(DUF772)
DDE_Tnp_4	PF13359.6	gi|433593464|ref|YP_007296205.1|	-	0.00016	21.4	0.0	0.61	9.7	0.0	2.3	2	0	0	2	2	2	2	DDE	superfamily	endonuclease
DDE_Tnp_1_3	PF13612.6	gi|433593464|ref|YP_007296205.1|	-	0.0013	18.8	0.0	0.0052	16.8	0.0	1.9	2	0	0	2	2	2	1	Transposase	DDE	domain
DDE_Tnp_1_6	PF13751.6	gi|433593464|ref|YP_007296205.1|	-	0.0024	18.1	0.2	0.0051	17.0	0.2	1.5	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_1_assoc	PF13808.6	gi|433593464|ref|YP_007296205.1|	-	0.13	12.3	0.2	2	8.5	0.0	2.9	2	1	1	3	3	3	0	DDE_Tnp_1-associated
GPDPase_memb	PF10110.9	gi|433593465|ref|YP_007296206.1|	-	5.8e-07	28.6	1.6	7.2e-07	28.3	1.6	1.1	1	0	0	1	1	1	1	Membrane	domain	of	glycerophosphoryl	diester	phosphodiesterase
Dr_adhesin	PF12393.8	gi|433593465|ref|YP_007296206.1|	-	0.096	13.0	0.7	0.33	11.3	0.7	1.9	1	0	0	1	1	1	0	Dr	family	adhesin
RHH_1	PF01402.21	gi|433593468|ref|YP_007296209.1|	-	0.0056	16.6	1.4	0.011	15.7	1.4	1.5	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
IF2_N	PF04760.15	gi|433593468|ref|YP_007296209.1|	-	0.012	15.4	0.1	0.099	12.5	0.0	2.0	2	0	0	2	2	2	0	Translation	initiation	factor	IF-2,	N-terminal	region
zf-C2HE	PF16278.5	gi|433593470|ref|YP_007296211.1|	-	0.021	15.3	0.0	0.12	12.8	0.0	2.2	2	0	0	2	2	2	0	C2HE	/	C2H2	/	C2HC	zinc-binding	finger
zf-Mss51	PF13824.6	gi|433593470|ref|YP_007296211.1|	-	0.063	13.4	8.6	8.7	6.5	0.1	3.6	2	1	0	3	3	3	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
RNA_POL_M_15KD	PF02150.16	gi|433593470|ref|YP_007296211.1|	-	0.076	12.9	3.3	2.3	8.2	0.2	3.3	3	0	0	3	3	3	0	RNA	polymerases	M/15	Kd	subunit
zf-BED	PF02892.15	gi|433593470|ref|YP_007296211.1|	-	0.39	10.8	2.4	3	7.9	0.1	2.9	3	0	0	3	3	3	0	BED	zinc	finger
zinc_ribbon_2	PF13240.6	gi|433593470|ref|YP_007296211.1|	-	0.99	9.2	13.4	0.11	12.2	2.2	3.3	3	0	0	3	3	3	0	zinc-ribbon	domain
zinc_ribbon_15	PF17032.5	gi|433593470|ref|YP_007296211.1|	-	1.4	9.7	8.5	6.9	7.5	0.6	2.7	2	1	0	2	2	2	0	zinc-ribbon	family
C1_1	PF00130.22	gi|433593470|ref|YP_007296211.1|	-	1.8	8.5	6.5	12	5.9	1.4	2.7	2	1	0	2	2	2	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
C1_2	PF03107.16	gi|433593470|ref|YP_007296211.1|	-	4.1	7.8	7.8	37	4.8	0.1	3.3	2	1	1	3	3	3	0	C1	domain
DZR	PF12773.7	gi|433593470|ref|YP_007296211.1|	-	5.6	7.1	11.4	1.5	8.9	1.2	3.0	2	1	0	2	2	2	0	Double	zinc	ribbon
PhnA_Zn_Ribbon	PF08274.12	gi|433593471|ref|YP_007296212.1|	-	0.021	14.8	3.0	0.56	10.2	0.3	2.1	1	1	1	2	2	2	0	PhnA	Zinc-Ribbon
Zn-ribbon_8	PF09723.10	gi|433593471|ref|YP_007296212.1|	-	0.046	13.8	1.4	0.12	12.5	1.2	1.7	1	1	0	1	1	1	0	Zinc	ribbon	domain
DDE_Tnp_1	PF01609.21	gi|433593472|ref|YP_007296213.1|	-	1.1e-21	77.4	0.0	1.7e-21	76.9	0.0	1.2	1	0	0	1	1	1	1	Transposase	DDE	domain
tRNA_anti-codon	PF01336.25	gi|433593473|ref|YP_007296214.1|	-	0.0019	18.1	0.0	0.0037	17.2	0.0	1.5	1	0	0	1	1	1	1	OB-fold	nucleic	acid	binding	domain
zf-C2H2_12	PF18658.1	gi|433593475|ref|YP_007296216.1|	-	0.011	15.3	0.0	0.018	14.6	0.0	1.4	1	0	0	1	1	1	0	Zinc-finger	C2H2-type
PadR	PF03551.14	gi|433593476|ref|YP_007296217.1|	-	6.4e-13	48.5	0.1	7.4e-13	48.3	0.1	1.1	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
HTH_45	PF14947.6	gi|433593476|ref|YP_007296217.1|	-	0.0062	16.5	0.1	0.0078	16.2	0.1	1.2	1	0	0	1	1	1	1	Winged	helix-turn-helix
DUF4358	PF14270.6	gi|433593476|ref|YP_007296217.1|	-	0.023	15.0	0.0	0.037	14.3	0.0	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4358)
HTH_27	PF13463.6	gi|433593476|ref|YP_007296217.1|	-	0.14	12.7	0.0	0.17	12.4	0.0	1.3	1	1	0	1	1	1	0	Winged	helix	DNA-binding	domain
DDE_Tnp_IS66	PF03050.14	gi|433593478|ref|YP_007296219.1|	-	2.7e-49	168.2	0.1	2.7e-49	168.2	0.1	2.1	2	0	0	2	2	2	1	Transposase	IS66	family
SlyX	PF04102.12	gi|433593478|ref|YP_007296219.1|	-	7.4e-09	36.1	7.8	2e-08	34.7	7.8	1.8	1	0	0	1	1	1	1	SlyX
zf-IS66	PF13005.7	gi|433593478|ref|YP_007296219.1|	-	9e-06	26.0	5.0	9e-06	26.0	5.0	2.7	3	0	0	3	3	1	1	zinc-finger	binding	domain	of	transposase	IS66
MscS_porin	PF12795.7	gi|433593478|ref|YP_007296219.1|	-	9.7e-06	25.3	6.6	1.7e-05	24.5	6.6	1.3	1	0	0	1	1	1	1	Mechanosensitive	ion	channel	porin	domain
DUF16	PF01519.16	gi|433593478|ref|YP_007296219.1|	-	0.00055	20.4	7.2	0.0011	19.4	7.2	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF16
UPF0242	PF06785.11	gi|433593478|ref|YP_007296219.1|	-	0.0015	18.7	13.2	0.0025	17.9	13.2	1.3	1	0	0	1	1	1	1	Uncharacterised	protein	family	(UPF0242)	N-terminus
HSBP1	PF06825.12	gi|433593478|ref|YP_007296219.1|	-	0.0024	17.7	6.2	0.016	15.0	0.8	2.6	1	1	0	2	2	2	1	Heat	shock	factor	binding	protein	1
SKA1	PF07160.12	gi|433593478|ref|YP_007296219.1|	-	0.0035	17.2	1.0	0.0057	16.5	1.0	1.3	1	0	0	1	1	1	1	Spindle	and	kinetochore-associated	protein	1
Herpes_UL14	PF03580.14	gi|433593478|ref|YP_007296219.1|	-	0.0048	17.2	1.4	0.0088	16.3	1.4	1.4	1	0	0	1	1	1	1	Herpesvirus	UL14-like	protein
Atg14	PF10186.9	gi|433593478|ref|YP_007296219.1|	-	0.018	14.2	7.6	0.028	13.5	7.6	1.2	1	0	0	1	1	1	0	Vacuolar	sorting	38	and	autophagy-related	subunit	14
DDE_Tnp_IS240	PF13610.6	gi|433593478|ref|YP_007296219.1|	-	0.019	15.2	2.0	0.087	13.1	0.0	2.4	2	1	0	2	2	2	0	DDE	domain
YkyA	PF10368.9	gi|433593478|ref|YP_007296219.1|	-	0.021	14.5	9.5	0.035	13.8	9.5	1.2	1	0	0	1	1	1	0	Putative	cell-wall	binding	lipoprotein
HemX	PF04375.14	gi|433593478|ref|YP_007296219.1|	-	0.024	13.9	4.1	0.038	13.3	4.1	1.2	1	0	0	1	1	1	0	HemX,	putative	uroporphyrinogen-III	C-methyltransferase
PKcGMP_CC	PF16808.5	gi|433593478|ref|YP_007296219.1|	-	0.026	14.4	26.3	0.13	12.1	6.8	2.6	2	0	0	2	2	2	0	Coiled-coil	N-terminus	of	cGMP-dependent	protein	kinase
Fmp27_WPPW	PF10359.9	gi|433593478|ref|YP_007296219.1|	-	0.031	13.1	5.6	0.049	12.5	5.6	1.2	1	0	0	1	1	1	0	RNA	pol	II	promoter	Fmp27	protein	domain
Exonuc_VII_L	PF02601.15	gi|433593478|ref|YP_007296219.1|	-	0.036	13.6	3.6	0.064	12.8	3.6	1.3	1	0	0	1	1	1	0	Exonuclease	VII,	large	subunit
ATG16	PF08614.11	gi|433593478|ref|YP_007296219.1|	-	0.051	13.8	10.6	0.1	12.8	10.6	1.5	1	0	0	1	1	1	0	Autophagy	protein	16	(ATG16)
AAA_13	PF13166.6	gi|433593478|ref|YP_007296219.1|	-	0.061	12.0	8.2	0.088	11.4	8.2	1.1	1	0	0	1	1	1	0	AAA	domain
DZR	PF12773.7	gi|433593478|ref|YP_007296219.1|	-	0.099	12.7	2.7	0.25	11.4	2.7	1.6	1	0	0	1	1	1	0	Double	zinc	ribbon
GAS	PF13851.6	gi|433593478|ref|YP_007296219.1|	-	0.11	11.9	9.7	0.2	11.0	9.7	1.3	1	0	0	1	1	1	0	Growth-arrest	specific	micro-tubule	binding
Cortex-I_coil	PF09304.10	gi|433593478|ref|YP_007296219.1|	-	0.11	12.7	10.5	0.23	11.7	10.5	1.5	1	0	0	1	1	1	0	Cortexillin	I,	coiled	coil
Phage_GPO	PF05929.11	gi|433593478|ref|YP_007296219.1|	-	0.11	12.1	3.1	0.18	11.4	3.1	1.3	1	0	0	1	1	1	0	Phage	capsid	scaffolding	protein	(GPO)	serine	peptidase
DUF3552	PF12072.8	gi|433593478|ref|YP_007296219.1|	-	0.11	11.9	15.6	0.2	11.1	15.6	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3552)
Terminase_4	PF05119.12	gi|433593478|ref|YP_007296219.1|	-	0.14	12.6	0.7	0.73	10.3	0.2	2.3	2	0	0	2	2	2	0	Phage	terminase,	small	subunit
DUF1664	PF07889.12	gi|433593478|ref|YP_007296219.1|	-	0.15	12.1	5.3	0.3	11.1	5.3	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1664)
Spc7	PF08317.11	gi|433593478|ref|YP_007296219.1|	-	0.15	10.9	11.6	0.17	10.7	10.5	1.6	2	0	0	2	2	1	0	Spc7	kinetochore	protein
FliD_C	PF07195.12	gi|433593478|ref|YP_007296219.1|	-	0.17	11.3	3.8	0.26	10.7	3.8	1.3	1	0	0	1	1	1	0	Flagellar	hook-associated	protein	2	C-terminus
TMF_DNA_bd	PF12329.8	gi|433593478|ref|YP_007296219.1|	-	0.17	11.9	12.6	0.34	10.9	12.6	1.5	1	0	0	1	1	1	0	TATA	element	modulatory	factor	1	DNA	binding
Fib_alpha	PF08702.10	gi|433593478|ref|YP_007296219.1|	-	0.18	12.0	5.5	0.39	10.9	5.5	1.5	1	0	0	1	1	1	0	Fibrinogen	alpha/beta	chain	family
CSN5_C	PF18323.1	gi|433593478|ref|YP_007296219.1|	-	0.19	12.7	0.7	5.4	8.0	0.8	2.6	2	0	0	2	2	2	0	Cop9	signalosome	subunit	5	C-terminal	domain
FAM76	PF16046.5	gi|433593478|ref|YP_007296219.1|	-	0.23	10.8	4.0	0.37	10.1	4.0	1.3	1	0	0	1	1	1	0	FAM76	protein
WASH_WAHD	PF11945.8	gi|433593478|ref|YP_007296219.1|	-	0.27	10.7	7.2	0.39	10.2	7.2	1.2	1	0	0	1	1	1	0	WAHD	domain	of	WASH	complex
DUF724	PF05266.14	gi|433593478|ref|YP_007296219.1|	-	0.27	11.0	6.4	0.46	10.3	6.4	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF724)
Allexi_40kDa	PF05549.11	gi|433593478|ref|YP_007296219.1|	-	0.32	10.5	2.8	0.55	9.7	2.8	1.3	1	0	0	1	1	1	0	Allexivirus	40kDa	protein
DUF3584	PF12128.8	gi|433593478|ref|YP_007296219.1|	-	0.36	8.3	7.2	0.51	7.8	7.2	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3584)
TMPIT	PF07851.13	gi|433593478|ref|YP_007296219.1|	-	0.36	10.0	4.1	0.57	9.4	4.1	1.2	1	0	0	1	1	1	0	TMPIT-like	protein
Flagellin_C	PF00700.21	gi|433593478|ref|YP_007296219.1|	-	0.39	11.1	1.2	0.79	10.1	1.2	1.4	1	0	0	1	1	1	0	Bacterial	flagellin	C-terminal	helical	region
ACCA	PF03255.14	gi|433593478|ref|YP_007296219.1|	-	0.5	10.2	5.0	1.3	8.9	5.0	1.7	1	0	0	1	1	1	0	Acetyl	co-enzyme	A	carboxylase	carboxyltransferase	alpha	subunit
DUF1910	PF08928.10	gi|433593478|ref|YP_007296219.1|	-	0.66	10.0	3.8	1.7	8.6	3.8	1.7	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1910)
LUC7	PF03194.15	gi|433593478|ref|YP_007296219.1|	-	0.69	9.5	7.5	1.4	8.5	7.5	1.4	1	0	0	1	1	1	0	LUC7	N_terminus
zf-FPG_IleRS	PF06827.14	gi|433593478|ref|YP_007296219.1|	-	0.81	9.6	4.3	8.7	6.3	0.2	3.3	3	0	0	3	3	3	0	Zinc	finger	found	in	FPG	and	IleRS
ExsD	PF16806.5	gi|433593478|ref|YP_007296219.1|	-	1	9.3	5.1	14	5.6	4.3	2.1	2	0	0	2	2	2	0	Antiactivator	protein	ExsD
DUF4407	PF14362.6	gi|433593478|ref|YP_007296219.1|	-	1	8.7	3.5	1.7	7.9	3.5	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4407)
RmuC	PF02646.16	gi|433593478|ref|YP_007296219.1|	-	1.1	8.4	7.0	1.7	7.7	7.0	1.2	1	0	0	1	1	1	0	RmuC	family
FemAB	PF02388.16	gi|433593478|ref|YP_007296219.1|	-	1.1	8.0	6.1	1.7	7.4	6.1	1.1	1	0	0	1	1	1	0	FemAB	family
Fzo_mitofusin	PF04799.13	gi|433593478|ref|YP_007296219.1|	-	1.4	8.4	6.1	2.5	7.6	6.1	1.3	1	0	0	1	1	1	0	fzo-like	conserved	region
Zn-ribbon_8	PF09723.10	gi|433593478|ref|YP_007296219.1|	-	1.6	8.9	5.5	14	5.9	0.8	2.7	2	0	0	2	2	2	0	Zinc	ribbon	domain
DUF1465	PF07323.12	gi|433593478|ref|YP_007296219.1|	-	1.8	8.4	6.9	1.4	8.7	3.5	2.5	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF1465)
DUF3450	PF11932.8	gi|433593478|ref|YP_007296219.1|	-	2.1	7.6	15.5	1.5	8.1	10.5	2.6	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF3450)
DUF2203	PF09969.9	gi|433593478|ref|YP_007296219.1|	-	2.1	9.1	8.1	5.8	7.7	6.4	2.2	2	0	0	2	2	2	0	Uncharacterized	conserved	protein	(DUF2203)
V_ATPase_I	PF01496.19	gi|433593478|ref|YP_007296219.1|	-	2.3	6.1	4.9	3.2	5.6	4.9	1.1	1	0	0	1	1	1	0	V-type	ATPase	116kDa	subunit	family
MPS2	PF17060.5	gi|433593478|ref|YP_007296219.1|	-	2.4	7.4	6.1	3.7	6.7	6.1	1.2	1	0	0	1	1	1	0	Monopolar	spindle	protein	2
Kre28	PF17097.5	gi|433593478|ref|YP_007296219.1|	-	4	6.3	12.8	0.37	9.7	8.3	1.4	2	0	0	2	2	1	0	Spindle	pole	body	component
ABC_tran_CTD	PF16326.5	gi|433593478|ref|YP_007296219.1|	-	6.3	7.1	22.3	1	9.7	16.9	2.3	2	0	0	2	2	2	0	ABC	transporter	C-terminal	domain
DLP_helical	PF18709.1	gi|433593478|ref|YP_007296219.1|	-	6.7	5.8	8.2	12	5.0	8.2	1.3	1	0	0	1	1	1	0	Dynamin-like	helical	domain
PadR	PF03551.14	gi|433593479|ref|YP_007296220.1|	-	5.6e-12	45.4	1.0	8.7e-12	44.8	1.0	1.3	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
TrmB	PF01978.19	gi|433593481|ref|YP_007296222.1|	-	1.4e-05	24.9	0.0	3.1e-05	23.7	0.0	1.6	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
FANCI_S1-cap	PF14674.6	gi|433593481|ref|YP_007296222.1|	-	0.027	14.6	0.0	0.05	13.7	0.0	1.3	1	0	0	1	1	1	0	FANCI	solenoid	1	cap
HTH_20	PF12840.7	gi|433593481|ref|YP_007296222.1|	-	0.082	13.0	0.0	0.22	11.6	0.0	1.7	2	0	0	2	2	2	0	Helix-turn-helix	domain
Phage_Gp19	PF09355.10	gi|433593482|ref|YP_007296223.1|	-	0.016	15.7	0.0	0.017	15.5	0.0	1.0	1	0	0	1	1	1	0	Phage	protein	Gp19/Gp15/Gp42
LTD	PF00932.19	gi|433593483|ref|YP_007296224.1|	-	3.9e-17	62.6	0.2	1.2e-16	61.1	0.1	1.9	2	0	0	2	2	2	1	Lamin	Tail	Domain
Lactamase_B	PF00753.27	gi|433593483|ref|YP_007296224.1|	-	3.7e-13	49.9	6.7	1.6e-12	47.9	6.7	2.1	1	1	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_6	PF16661.5	gi|433593483|ref|YP_007296224.1|	-	0.00046	19.7	0.0	0.0008	18.9	0.0	1.3	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily	domain
Lactamase_B_2	PF12706.7	gi|433593483|ref|YP_007296224.1|	-	0.0018	17.8	0.0	0.0029	17.1	0.0	1.3	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
DUF3006	PF11213.8	gi|433593484|ref|YP_007296225.1|	-	1.6e-18	66.7	2.3	1.9e-18	66.4	2.3	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3006)
NdhS	PF11623.8	gi|433593484|ref|YP_007296225.1|	-	0.021	14.5	0.0	0.036	13.7	0.0	1.3	1	0	0	1	1	1	0	NAD(P)H	dehydrogenase	subunit	S
DUF1863	PF08937.11	gi|433593485|ref|YP_007296226.1|	-	4e-27	95.1	2.0	4.1e-27	95.1	1.2	1.4	2	0	0	2	2	2	1	MTH538	TIR-like	domain	(DUF1863)
TIR_2	PF13676.6	gi|433593485|ref|YP_007296226.1|	-	0.0016	19.1	0.0	0.0022	18.6	0.0	1.3	1	0	0	1	1	1	1	TIR	domain
DUF99	PF01949.16	gi|433593485|ref|YP_007296226.1|	-	0.13	11.7	0.1	0.18	11.2	0.1	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	DUF99
HIT	PF01230.23	gi|433593487|ref|YP_007296228.1|	-	3.1e-23	82.3	0.0	3.8e-23	82.1	0.0	1.1	1	0	0	1	1	1	1	HIT	domain
DcpS_C	PF11969.8	gi|433593487|ref|YP_007296228.1|	-	1.9e-11	44.4	0.0	2.8e-11	43.9	0.0	1.2	1	0	0	1	1	1	1	Scavenger	mRNA	decapping	enzyme	C-term	binding
CwfJ_C_1	PF04677.15	gi|433593487|ref|YP_007296228.1|	-	0.00019	21.3	0.0	0.00025	20.9	0.0	1.3	1	1	0	1	1	1	1	Protein	similar	to	CwfJ	C-terminus	1
DUF1863	PF08937.11	gi|433593488|ref|YP_007296229.1|	-	2.9e-30	105.2	0.8	2e-29	102.5	0.2	2.1	2	0	0	2	2	2	1	MTH538	TIR-like	domain	(DUF1863)
Dimeth_Pyl	PF09505.10	gi|433593488|ref|YP_007296229.1|	-	0.025	13.1	0.1	0.044	12.3	0.1	1.3	1	0	0	1	1	1	0	Dimethylamine	methyltransferase	(Dimeth_PyL)
SCAB-ABD	PF16711.5	gi|433593488|ref|YP_007296229.1|	-	0.037	13.9	0.1	0.074	13.0	0.1	1.4	1	0	0	1	1	1	0	Actin-binding	domain	of	plant-specific	actin-binding	protein
FlxA	PF14282.6	gi|433593489|ref|YP_007296230.1|	-	0.00072	19.5	1.0	0.0019	18.2	1.0	1.6	1	0	0	1	1	1	1	FlxA-like	protein
UPF0242	PF06785.11	gi|433593489|ref|YP_007296230.1|	-	0.0021	18.2	0.6	0.0036	17.4	0.6	1.4	1	0	0	1	1	1	1	Uncharacterised	protein	family	(UPF0242)	N-terminus
SlyX	PF04102.12	gi|433593489|ref|YP_007296230.1|	-	0.0059	17.2	8.0	0.85	10.3	4.5	3.5	3	1	0	3	3	3	1	SlyX
DUF641	PF04859.12	gi|433593489|ref|YP_007296230.1|	-	0.016	15.5	2.0	0.041	14.2	2.0	1.7	1	0	0	1	1	1	0	Plant	protein	of	unknown	function	(DUF641)
ZapB	PF06005.12	gi|433593489|ref|YP_007296230.1|	-	0.068	13.6	3.2	0.23	11.9	3.2	1.9	1	0	0	1	1	1	0	Cell	division	protein	ZapB
HSBP1	PF06825.12	gi|433593489|ref|YP_007296230.1|	-	0.1	12.5	1.7	5.3	7.0	1.7	2.7	1	1	0	1	1	1	0	Heat	shock	factor	binding	protein	1
Atg14	PF10186.9	gi|433593489|ref|YP_007296230.1|	-	0.18	10.9	5.0	0.26	10.3	5.0	1.2	1	0	0	1	1	1	0	Vacuolar	sorting	38	and	autophagy-related	subunit	14
DUF1664	PF07889.12	gi|433593489|ref|YP_007296230.1|	-	0.2	11.7	0.6	0.43	10.6	0.6	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1664)
FAM76	PF16046.5	gi|433593489|ref|YP_007296230.1|	-	1.1	8.6	6.7	0.064	12.6	1.5	1.5	2	0	0	2	2	2	0	FAM76	protein
ATG16	PF08614.11	gi|433593489|ref|YP_007296230.1|	-	1.5	9.0	17.5	0.072	13.3	9.3	2.1	2	0	0	2	2	2	0	Autophagy	protein	16	(ATG16)
NYD-SP28	PF14772.6	gi|433593489|ref|YP_007296230.1|	-	2.9	8.0	11.5	0.21	11.6	2.4	2.5	2	0	0	2	2	2	0	Sperm	tail
PKcGMP_CC	PF16808.5	gi|433593489|ref|YP_007296230.1|	-	5.6	6.9	10.7	5.4	6.9	1.4	2.6	1	1	1	2	2	2	0	Coiled-coil	N-terminus	of	cGMP-dependent	protein	kinase
TrwB_AAD_bind	PF10412.9	gi|433593490|ref|YP_007296231.1|	-	3.8e-08	32.7	0.0	6.8e-07	28.5	0.0	2.1	1	1	0	1	1	1	1	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
TraG-D_C	PF12696.7	gi|433593490|ref|YP_007296231.1|	-	1.1e-05	25.4	0.0	2.8e-05	24.1	0.0	1.7	1	0	0	1	1	1	1	TraM	recognition	site	of	TraD	and	TraG
T4SS-DNA_transf	PF02534.14	gi|433593490|ref|YP_007296231.1|	-	0.00032	19.6	0.1	0.0071	15.2	0.1	2.1	2	0	0	2	2	2	1	Type	IV	secretory	system	Conjugative	DNA	transfer
PG_binding_1	PF01471.18	gi|433593490|ref|YP_007296231.1|	-	0.0038	17.4	0.2	0.03	14.5	0.0	2.5	3	0	0	3	3	3	1	Putative	peptidoglycan	binding	domain
HHH_6	PF14579.6	gi|433593490|ref|YP_007296231.1|	-	0.011	16.0	0.0	0.026	14.8	0.0	1.6	1	0	0	1	1	1	0	Helix-hairpin-helix	motif
FtsK_SpoIIIE	PF01580.18	gi|433593490|ref|YP_007296231.1|	-	0.038	13.4	0.3	0.77	9.1	0.0	3.0	4	0	0	4	4	4	0	FtsK/SpoIIIE	family
DUF87	PF01935.17	gi|433593490|ref|YP_007296231.1|	-	0.091	12.8	0.3	0.34	11.0	0.0	2.2	2	1	0	2	2	2	0	Helicase	HerA,	central	domain
NACHT	PF05729.12	gi|433593490|ref|YP_007296231.1|	-	0.15	12.0	0.0	0.38	10.7	0.0	1.7	1	0	0	1	1	1	0	NACHT	domain
Pox_D5	PF03288.16	gi|433593490|ref|YP_007296231.1|	-	0.16	12.5	0.0	0.35	11.4	0.0	1.6	1	0	0	1	1	1	0	Poxvirus	D5	protein-like
Rsa3	PF14615.6	gi|433593491|ref|YP_007296232.1|	-	0.025	14.1	0.0	0.067	12.8	0.0	1.7	2	0	0	2	2	2	0	Ribosome-assembly	protein	3
DDE_Tnp_1	PF01609.21	gi|433593492|ref|YP_007296233.1|	-	4.4e-27	95.1	0.0	6.1e-27	94.7	0.0	1.2	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_2	PF04693.12	gi|433593492|ref|YP_007296233.1|	-	0.0015	17.9	0.1	0.0022	17.3	0.1	1.2	1	0	0	1	1	1	1	Archaeal	putative	transposase	ISC1217
DDE_Tnp_1_4	PF13701.6	gi|433593492|ref|YP_007296233.1|	-	0.11	10.7	0.0	0.16	10.2	0.0	1.2	1	0	0	1	1	1	0	Transposase	DDE	domain	group	1
DUF3487	PF11990.8	gi|433593493|ref|YP_007296234.1|	-	0.19	11.6	0.6	0.48	10.3	0.6	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3487)
ResIII	PF04851.15	gi|433593499|ref|YP_007296240.1|	-	3.2e-24	85.8	0.0	1.4e-23	83.8	0.0	1.9	2	0	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
ERCC3_RAD25_C	PF16203.5	gi|433593499|ref|YP_007296240.1|	-	2.2e-21	76.2	0.1	3.6e-21	75.5	0.1	1.2	1	0	0	1	1	1	1	ERCC3/RAD25/XPB	C-terminal	helicase
Helicase_C	PF00271.31	gi|433593499|ref|YP_007296240.1|	-	4e-17	62.6	0.1	1.8e-16	60.5	0.1	2.1	3	0	0	3	3	3	1	Helicase	conserved	C-terminal	domain
XPB_DRD	PF18458.1	gi|433593499|ref|YP_007296240.1|	-	7.9e-13	48.1	1.0	7.9e-13	48.1	1.0	2.4	2	0	0	2	2	2	1	Xeroderma	pigmentosum	group	B	helicase	damage	recognition	domain
DEAD	PF00270.29	gi|433593499|ref|YP_007296240.1|	-	2.8e-07	30.5	0.0	9.3e-07	28.8	0.0	1.9	1	1	0	1	1	1	1	DEAD/DEAH	box	helicase
IstB_IS21	PF01695.17	gi|433593499|ref|YP_007296240.1|	-	0.0024	17.6	0.0	0.4	10.4	0.0	3.1	4	0	0	4	4	4	1	IstB-like	ATP	binding	protein
AAA_22	PF13401.6	gi|433593499|ref|YP_007296240.1|	-	0.013	15.7	0.0	0.11	12.8	0.0	2.5	2	1	0	2	2	2	0	AAA	domain
Helicase_C_2	PF13307.6	gi|433593499|ref|YP_007296240.1|	-	0.12	12.6	0.2	3.2	7.9	0.0	2.6	1	1	1	2	2	2	0	Helicase	C-terminal	domain
PhoH	PF02562.16	gi|433593499|ref|YP_007296240.1|	-	0.13	11.7	0.0	0.21	11.0	0.0	1.3	1	0	0	1	1	1	0	PhoH-like	protein
Calci_bind_CcbP	PF11535.8	gi|433593500|ref|YP_007296241.1|	-	4e-41	139.8	0.3	4.6e-41	139.6	0.3	1.0	1	0	0	1	1	1	1	Calcium	binding
DDE_Tnp_1	PF01609.21	gi|433593502|ref|YP_007296243.1|	-	2.6e-17	63.2	0.0	4.1e-17	62.6	0.0	1.2	1	0	0	1	1	1	1	Transposase	DDE	domain
DUF772	PF05598.11	gi|433593502|ref|YP_007296243.1|	-	9.2e-05	22.4	0.0	0.00018	21.5	0.0	1.5	1	0	0	1	1	1	1	Transposase	domain	(DUF772)
DDE_Tnp_1	PF01609.21	gi|433593506|ref|YP_007296247.1|	-	4.4e-27	95.1	0.0	6.1e-27	94.7	0.0	1.2	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_2	PF04693.12	gi|433593506|ref|YP_007296247.1|	-	0.0015	17.9	0.1	0.0022	17.3	0.1	1.2	1	0	0	1	1	1	1	Archaeal	putative	transposase	ISC1217
DDE_Tnp_1_4	PF13701.6	gi|433593506|ref|YP_007296247.1|	-	0.11	10.7	0.0	0.16	10.2	0.0	1.2	1	0	0	1	1	1	0	Transposase	DDE	domain	group	1
PRiA4_ORF3	PF07929.11	gi|433593507|ref|YP_007296248.1|	-	1.1e-15	57.8	0.6	5.2e-14	52.3	0.0	2.1	2	0	0	2	2	2	2	Plasmid	pRiA4b	ORF-3-like	protein
DUF3499	PF12005.8	gi|433593507|ref|YP_007296248.1|	-	0.03	14.9	0.2	0.05	14.2	0.2	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3499)
DDE_Tnp_1	PF01609.21	gi|433593508|ref|YP_007296249.1|	-	2.6e-17	63.2	0.0	4.1e-17	62.6	0.0	1.2	1	0	0	1	1	1	1	Transposase	DDE	domain
DUF772	PF05598.11	gi|433593508|ref|YP_007296249.1|	-	9.2e-05	22.4	0.0	0.00018	21.5	0.0	1.5	1	0	0	1	1	1	1	Transposase	domain	(DUF772)
DDE_Tnp_IS66	PF03050.14	gi|433593511|ref|YP_007296252.1|	-	2.4e-47	161.7	0.3	2.4e-47	161.7	0.3	1.6	2	0	0	2	2	2	1	Transposase	IS66	family
Tropomyosin_1	PF12718.7	gi|433593511|ref|YP_007296252.1|	-	8.3e-06	26.0	6.5	1.8e-05	24.9	6.5	1.5	1	0	0	1	1	1	1	Tropomyosin	like
ERM	PF00769.19	gi|433593511|ref|YP_007296252.1|	-	0.00015	21.7	1.2	0.00028	20.8	0.9	1.6	2	0	0	2	2	1	1	Ezrin/radixin/moesin	family
DDE_Tnp_IS240	PF13610.6	gi|433593511|ref|YP_007296252.1|	-	0.00033	20.9	0.8	0.0019	18.4	0.0	2.3	2	1	0	2	2	2	1	DDE	domain
SlyX	PF04102.12	gi|433593511|ref|YP_007296252.1|	-	0.001	19.6	8.4	0.004	17.7	8.4	2.0	1	0	0	1	1	1	1	SlyX
zf-IS66	PF13005.7	gi|433593511|ref|YP_007296252.1|	-	0.0015	18.9	8.7	0.0015	18.9	8.7	2.4	3	0	0	3	3	1	1	zinc-finger	binding	domain	of	transposase	IS66
Spc7	PF08317.11	gi|433593511|ref|YP_007296252.1|	-	0.0026	16.7	4.7	0.0055	15.6	4.7	1.5	1	0	0	1	1	1	1	Spc7	kinetochore	protein
HOOK	PF05622.12	gi|433593511|ref|YP_007296252.1|	-	0.0036	15.5	7.2	0.0057	14.9	7.2	1.2	1	0	0	1	1	1	1	HOOK	protein
Tmemb_cc2	PF10267.9	gi|433593511|ref|YP_007296252.1|	-	0.0043	16.3	1.0	0.007	15.6	1.0	1.3	1	0	0	1	1	1	1	Predicted	transmembrane	and	coiled-coil	2	protein
Atg14	PF10186.9	gi|433593511|ref|YP_007296252.1|	-	0.015	14.4	3.5	0.025	13.7	3.5	1.2	1	0	0	1	1	1	0	Vacuolar	sorting	38	and	autophagy-related	subunit	14
DUF4472	PF14739.6	gi|433593511|ref|YP_007296252.1|	-	0.021	15.6	4.3	0.021	15.6	4.3	1.8	2	0	0	2	2	1	0	Domain	of	unknown	function	(DUF4472)
DUF4763	PF15960.5	gi|433593511|ref|YP_007296252.1|	-	0.028	13.7	5.2	0.054	12.8	5.2	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4763)
FmiP_Thoc5	PF09766.9	gi|433593511|ref|YP_007296252.1|	-	0.029	13.7	3.4	0.043	13.1	3.4	1.2	1	0	0	1	1	1	0	Fms-interacting	protein/Thoc5
XLF	PF09302.11	gi|433593511|ref|YP_007296252.1|	-	0.034	14.3	2.3	0.53	10.4	2.8	2.1	2	0	0	2	2	2	0	XLF-Cernunnos,	XRcc4-like	factor,	NHEJ	component
Med4	PF10018.9	gi|433593511|ref|YP_007296252.1|	-	0.05	13.3	4.6	0.098	12.3	4.6	1.4	1	0	0	1	1	1	0	Vitamin-D-receptor	interacting	Mediator	subunit	4
TMF_DNA_bd	PF12329.8	gi|433593511|ref|YP_007296252.1|	-	0.071	13.1	13.5	0.13	12.3	13.5	1.4	1	0	0	1	1	1	0	TATA	element	modulatory	factor	1	DNA	binding
DUF3450	PF11932.8	gi|433593511|ref|YP_007296252.1|	-	0.075	12.3	8.6	1.4	8.1	7.3	2.5	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3450)
bZIP_1	PF00170.21	gi|433593511|ref|YP_007296252.1|	-	0.079	13.1	9.5	0.072	13.2	6.8	2.2	1	1	1	2	2	2	0	bZIP	transcription	factor
DUF3552	PF12072.8	gi|433593511|ref|YP_007296252.1|	-	0.084	12.3	9.2	0.16	11.4	9.2	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3552)
DUF641	PF04859.12	gi|433593511|ref|YP_007296252.1|	-	0.13	12.6	7.5	0.16	12.3	6.1	1.8	2	0	0	2	2	1	0	Plant	protein	of	unknown	function	(DUF641)
HemX	PF04375.14	gi|433593511|ref|YP_007296252.1|	-	0.16	11.2	2.9	0.3	10.3	2.9	1.3	1	0	0	1	1	1	0	HemX,	putative	uroporphyrinogen-III	C-methyltransferase
Fmp27_WPPW	PF10359.9	gi|433593511|ref|YP_007296252.1|	-	0.18	10.6	3.8	0.29	9.9	3.8	1.2	1	0	0	1	1	1	0	RNA	pol	II	promoter	Fmp27	protein	domain
PspA_IM30	PF04012.12	gi|433593511|ref|YP_007296252.1|	-	0.2	11.2	8.8	0.52	9.8	8.8	1.6	1	0	0	1	1	1	0	PspA/IM30	family
PKcGMP_CC	PF16808.5	gi|433593511|ref|YP_007296252.1|	-	0.2	11.5	18.9	0.25	11.2	3.1	2.4	1	1	1	2	2	2	0	Coiled-coil	N-terminus	of	cGMP-dependent	protein	kinase
DUF4407	PF14362.6	gi|433593511|ref|YP_007296252.1|	-	0.25	10.7	2.1	0.45	9.8	2.1	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4407)
ATG16	PF08614.11	gi|433593511|ref|YP_007296252.1|	-	0.28	11.4	11.4	0.2	11.9	9.1	1.8	2	0	0	2	2	1	0	Autophagy	protein	16	(ATG16)
AAA_13	PF13166.6	gi|433593511|ref|YP_007296252.1|	-	0.31	9.7	4.2	0.45	9.1	4.2	1.2	1	0	0	1	1	1	0	AAA	domain
DUF1664	PF07889.12	gi|433593511|ref|YP_007296252.1|	-	0.34	11.0	2.4	0.72	9.9	2.4	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1664)
FlaC_arch	PF05377.11	gi|433593511|ref|YP_007296252.1|	-	0.41	11.1	5.6	1	9.8	5.6	1.7	1	0	0	1	1	1	0	Flagella	accessory	protein	C	(FlaC)
RPW8	PF05659.11	gi|433593511|ref|YP_007296252.1|	-	0.43	10.3	2.7	0.8	9.4	2.7	1.4	1	0	0	1	1	1	0	Arabidopsis	broad-spectrum	mildew	resistance	protein	RPW8
DUF812	PF05667.11	gi|433593511|ref|YP_007296252.1|	-	0.46	9.3	6.6	0.71	8.7	6.6	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF812)
Spc24	PF08286.11	gi|433593511|ref|YP_007296252.1|	-	0.54	10.5	4.5	1.4	9.2	4.5	1.7	1	0	0	1	1	1	0	Spc24	subunit	of	Ndc80
FemAB	PF02388.16	gi|433593511|ref|YP_007296252.1|	-	0.61	8.9	4.1	0.89	8.4	4.1	1.1	1	0	0	1	1	1	0	FemAB	family
DUF4200	PF13863.6	gi|433593511|ref|YP_007296252.1|	-	0.66	10.4	14.8	0.061	13.7	10.0	1.7	2	0	0	2	2	1	0	Domain	of	unknown	function	(DUF4200)
TMF_TATA_bd	PF12325.8	gi|433593511|ref|YP_007296252.1|	-	0.73	10.1	11.1	2.3	8.4	11.1	1.8	1	0	0	1	1	1	0	TATA	element	modulatory	factor	1	TATA	binding
MctB	PF11382.8	gi|433593511|ref|YP_007296252.1|	-	0.83	9.3	3.3	1.6	8.3	3.3	1.4	1	0	0	1	1	1	0	Copper	transport	outer	membrane	protein,	MctB
Csm1_N	PF18504.1	gi|433593511|ref|YP_007296252.1|	-	1.3	9.4	12.9	0.2	12.0	6.7	2.7	3	0	0	3	3	2	0	Csm1	N-terminal	domain
TMPIT	PF07851.13	gi|433593511|ref|YP_007296252.1|	-	1.4	8.0	3.2	2.7	7.2	3.2	1.3	1	0	0	1	1	1	0	TMPIT-like	protein
GrpE	PF01025.19	gi|433593511|ref|YP_007296252.1|	-	3.9	7.1	7.7	8.7	6.0	7.7	1.5	1	0	0	1	1	1	0	GrpE
ABC_tran_CTD	PF16326.5	gi|433593511|ref|YP_007296252.1|	-	4.2	7.7	14.0	2	8.7	10.1	2.4	2	0	0	2	2	2	0	ABC	transporter	C-terminal	domain
DDE_Tnp_IS66	PF03050.14	gi|433593513|ref|YP_007296254.1|	-	2.7e-49	168.2	0.1	2.7e-49	168.2	0.1	2.1	2	0	0	2	2	2	1	Transposase	IS66	family
SlyX	PF04102.12	gi|433593513|ref|YP_007296254.1|	-	7.4e-09	36.1	7.8	2e-08	34.7	7.8	1.8	1	0	0	1	1	1	1	SlyX
zf-IS66	PF13005.7	gi|433593513|ref|YP_007296254.1|	-	9e-06	26.0	5.0	9e-06	26.0	5.0	2.7	3	0	0	3	3	1	1	zinc-finger	binding	domain	of	transposase	IS66
MscS_porin	PF12795.7	gi|433593513|ref|YP_007296254.1|	-	9.7e-06	25.3	6.6	1.7e-05	24.5	6.6	1.3	1	0	0	1	1	1	1	Mechanosensitive	ion	channel	porin	domain
DUF16	PF01519.16	gi|433593513|ref|YP_007296254.1|	-	0.00055	20.4	7.2	0.0011	19.4	7.2	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF16
UPF0242	PF06785.11	gi|433593513|ref|YP_007296254.1|	-	0.0015	18.7	13.2	0.0025	17.9	13.2	1.3	1	0	0	1	1	1	1	Uncharacterised	protein	family	(UPF0242)	N-terminus
HSBP1	PF06825.12	gi|433593513|ref|YP_007296254.1|	-	0.0024	17.7	6.2	0.016	15.0	0.8	2.6	1	1	0	2	2	2	1	Heat	shock	factor	binding	protein	1
SKA1	PF07160.12	gi|433593513|ref|YP_007296254.1|	-	0.0035	17.2	1.0	0.0057	16.5	1.0	1.3	1	0	0	1	1	1	1	Spindle	and	kinetochore-associated	protein	1
Herpes_UL14	PF03580.14	gi|433593513|ref|YP_007296254.1|	-	0.0048	17.2	1.4	0.0088	16.3	1.4	1.4	1	0	0	1	1	1	1	Herpesvirus	UL14-like	protein
Atg14	PF10186.9	gi|433593513|ref|YP_007296254.1|	-	0.018	14.2	7.6	0.028	13.5	7.6	1.2	1	0	0	1	1	1	0	Vacuolar	sorting	38	and	autophagy-related	subunit	14
DDE_Tnp_IS240	PF13610.6	gi|433593513|ref|YP_007296254.1|	-	0.019	15.2	2.0	0.087	13.1	0.0	2.4	2	1	0	2	2	2	0	DDE	domain
YkyA	PF10368.9	gi|433593513|ref|YP_007296254.1|	-	0.021	14.5	9.5	0.035	13.8	9.5	1.2	1	0	0	1	1	1	0	Putative	cell-wall	binding	lipoprotein
HemX	PF04375.14	gi|433593513|ref|YP_007296254.1|	-	0.024	13.9	4.1	0.038	13.3	4.1	1.2	1	0	0	1	1	1	0	HemX,	putative	uroporphyrinogen-III	C-methyltransferase
PKcGMP_CC	PF16808.5	gi|433593513|ref|YP_007296254.1|	-	0.026	14.4	26.3	0.13	12.1	6.8	2.6	2	0	0	2	2	2	0	Coiled-coil	N-terminus	of	cGMP-dependent	protein	kinase
Fmp27_WPPW	PF10359.9	gi|433593513|ref|YP_007296254.1|	-	0.031	13.1	5.6	0.049	12.5	5.6	1.2	1	0	0	1	1	1	0	RNA	pol	II	promoter	Fmp27	protein	domain
Exonuc_VII_L	PF02601.15	gi|433593513|ref|YP_007296254.1|	-	0.036	13.6	3.6	0.064	12.8	3.6	1.3	1	0	0	1	1	1	0	Exonuclease	VII,	large	subunit
ATG16	PF08614.11	gi|433593513|ref|YP_007296254.1|	-	0.051	13.8	10.6	0.1	12.8	10.6	1.5	1	0	0	1	1	1	0	Autophagy	protein	16	(ATG16)
AAA_13	PF13166.6	gi|433593513|ref|YP_007296254.1|	-	0.061	12.0	8.2	0.088	11.4	8.2	1.1	1	0	0	1	1	1	0	AAA	domain
DZR	PF12773.7	gi|433593513|ref|YP_007296254.1|	-	0.099	12.7	2.7	0.25	11.4	2.7	1.6	1	0	0	1	1	1	0	Double	zinc	ribbon
GAS	PF13851.6	gi|433593513|ref|YP_007296254.1|	-	0.11	11.9	9.7	0.2	11.0	9.7	1.3	1	0	0	1	1	1	0	Growth-arrest	specific	micro-tubule	binding
Cortex-I_coil	PF09304.10	gi|433593513|ref|YP_007296254.1|	-	0.11	12.7	10.5	0.23	11.7	10.5	1.5	1	0	0	1	1	1	0	Cortexillin	I,	coiled	coil
Phage_GPO	PF05929.11	gi|433593513|ref|YP_007296254.1|	-	0.11	12.1	3.1	0.18	11.4	3.1	1.3	1	0	0	1	1	1	0	Phage	capsid	scaffolding	protein	(GPO)	serine	peptidase
DUF3552	PF12072.8	gi|433593513|ref|YP_007296254.1|	-	0.11	11.9	15.6	0.2	11.1	15.6	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3552)
Terminase_4	PF05119.12	gi|433593513|ref|YP_007296254.1|	-	0.14	12.6	0.7	0.73	10.3	0.2	2.3	2	0	0	2	2	2	0	Phage	terminase,	small	subunit
DUF1664	PF07889.12	gi|433593513|ref|YP_007296254.1|	-	0.15	12.1	5.3	0.3	11.1	5.3	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1664)
Spc7	PF08317.11	gi|433593513|ref|YP_007296254.1|	-	0.15	10.9	11.6	0.17	10.7	10.5	1.6	2	0	0	2	2	1	0	Spc7	kinetochore	protein
FliD_C	PF07195.12	gi|433593513|ref|YP_007296254.1|	-	0.17	11.3	3.8	0.26	10.7	3.8	1.3	1	0	0	1	1	1	0	Flagellar	hook-associated	protein	2	C-terminus
TMF_DNA_bd	PF12329.8	gi|433593513|ref|YP_007296254.1|	-	0.17	11.9	12.6	0.34	10.9	12.6	1.5	1	0	0	1	1	1	0	TATA	element	modulatory	factor	1	DNA	binding
Fib_alpha	PF08702.10	gi|433593513|ref|YP_007296254.1|	-	0.18	12.0	5.5	0.39	10.9	5.5	1.5	1	0	0	1	1	1	0	Fibrinogen	alpha/beta	chain	family
CSN5_C	PF18323.1	gi|433593513|ref|YP_007296254.1|	-	0.19	12.7	0.7	5.4	8.0	0.8	2.6	2	0	0	2	2	2	0	Cop9	signalosome	subunit	5	C-terminal	domain
FAM76	PF16046.5	gi|433593513|ref|YP_007296254.1|	-	0.23	10.8	4.0	0.37	10.1	4.0	1.3	1	0	0	1	1	1	0	FAM76	protein
WASH_WAHD	PF11945.8	gi|433593513|ref|YP_007296254.1|	-	0.27	10.7	7.2	0.39	10.2	7.2	1.2	1	0	0	1	1	1	0	WAHD	domain	of	WASH	complex
DUF724	PF05266.14	gi|433593513|ref|YP_007296254.1|	-	0.27	11.0	6.4	0.46	10.3	6.4	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF724)
Allexi_40kDa	PF05549.11	gi|433593513|ref|YP_007296254.1|	-	0.32	10.5	2.8	0.55	9.7	2.8	1.3	1	0	0	1	1	1	0	Allexivirus	40kDa	protein
DUF3584	PF12128.8	gi|433593513|ref|YP_007296254.1|	-	0.36	8.3	7.2	0.51	7.8	7.2	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3584)
TMPIT	PF07851.13	gi|433593513|ref|YP_007296254.1|	-	0.36	10.0	4.1	0.57	9.4	4.1	1.2	1	0	0	1	1	1	0	TMPIT-like	protein
Flagellin_C	PF00700.21	gi|433593513|ref|YP_007296254.1|	-	0.39	11.1	1.2	0.79	10.1	1.2	1.4	1	0	0	1	1	1	0	Bacterial	flagellin	C-terminal	helical	region
ACCA	PF03255.14	gi|433593513|ref|YP_007296254.1|	-	0.5	10.2	5.0	1.3	8.9	5.0	1.7	1	0	0	1	1	1	0	Acetyl	co-enzyme	A	carboxylase	carboxyltransferase	alpha	subunit
DUF1910	PF08928.10	gi|433593513|ref|YP_007296254.1|	-	0.66	10.0	3.8	1.7	8.6	3.8	1.7	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1910)
LUC7	PF03194.15	gi|433593513|ref|YP_007296254.1|	-	0.69	9.5	7.5	1.4	8.5	7.5	1.4	1	0	0	1	1	1	0	LUC7	N_terminus
zf-FPG_IleRS	PF06827.14	gi|433593513|ref|YP_007296254.1|	-	0.81	9.6	4.3	8.7	6.3	0.2	3.3	3	0	0	3	3	3	0	Zinc	finger	found	in	FPG	and	IleRS
ExsD	PF16806.5	gi|433593513|ref|YP_007296254.1|	-	1	9.3	5.1	14	5.6	4.3	2.1	2	0	0	2	2	2	0	Antiactivator	protein	ExsD
DUF4407	PF14362.6	gi|433593513|ref|YP_007296254.1|	-	1	8.7	3.5	1.7	7.9	3.5	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4407)
RmuC	PF02646.16	gi|433593513|ref|YP_007296254.1|	-	1.1	8.4	7.0	1.7	7.7	7.0	1.2	1	0	0	1	1	1	0	RmuC	family
FemAB	PF02388.16	gi|433593513|ref|YP_007296254.1|	-	1.1	8.0	6.1	1.7	7.4	6.1	1.1	1	0	0	1	1	1	0	FemAB	family
Fzo_mitofusin	PF04799.13	gi|433593513|ref|YP_007296254.1|	-	1.4	8.4	6.1	2.5	7.6	6.1	1.3	1	0	0	1	1	1	0	fzo-like	conserved	region
Zn-ribbon_8	PF09723.10	gi|433593513|ref|YP_007296254.1|	-	1.6	8.9	5.5	14	5.9	0.8	2.7	2	0	0	2	2	2	0	Zinc	ribbon	domain
DUF1465	PF07323.12	gi|433593513|ref|YP_007296254.1|	-	1.8	8.4	6.9	1.4	8.7	3.5	2.5	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF1465)
DUF3450	PF11932.8	gi|433593513|ref|YP_007296254.1|	-	2.1	7.6	15.5	1.5	8.1	10.5	2.6	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF3450)
DUF2203	PF09969.9	gi|433593513|ref|YP_007296254.1|	-	2.1	9.1	8.1	5.8	7.7	6.4	2.2	2	0	0	2	2	2	0	Uncharacterized	conserved	protein	(DUF2203)
V_ATPase_I	PF01496.19	gi|433593513|ref|YP_007296254.1|	-	2.3	6.1	4.9	3.2	5.6	4.9	1.1	1	0	0	1	1	1	0	V-type	ATPase	116kDa	subunit	family
MPS2	PF17060.5	gi|433593513|ref|YP_007296254.1|	-	2.4	7.4	6.1	3.7	6.7	6.1	1.2	1	0	0	1	1	1	0	Monopolar	spindle	protein	2
Kre28	PF17097.5	gi|433593513|ref|YP_007296254.1|	-	4	6.3	12.8	0.37	9.7	8.3	1.4	2	0	0	2	2	1	0	Spindle	pole	body	component
ABC_tran_CTD	PF16326.5	gi|433593513|ref|YP_007296254.1|	-	6.3	7.1	22.3	1	9.7	16.9	2.3	2	0	0	2	2	2	0	ABC	transporter	C-terminal	domain
DLP_helical	PF18709.1	gi|433593513|ref|YP_007296254.1|	-	6.7	5.8	8.2	12	5.0	8.2	1.3	1	0	0	1	1	1	0	Dynamin-like	helical	domain
DDE_Tnp_IS66	PF03050.14	gi|433593514|ref|YP_007296255.1|	-	2.7e-49	168.2	0.1	2.7e-49	168.2	0.1	2.1	2	0	0	2	2	2	1	Transposase	IS66	family
SlyX	PF04102.12	gi|433593514|ref|YP_007296255.1|	-	7.4e-09	36.1	7.8	2e-08	34.7	7.8	1.8	1	0	0	1	1	1	1	SlyX
zf-IS66	PF13005.7	gi|433593514|ref|YP_007296255.1|	-	9e-06	26.0	5.0	9e-06	26.0	5.0	2.7	3	0	0	3	3	1	1	zinc-finger	binding	domain	of	transposase	IS66
MscS_porin	PF12795.7	gi|433593514|ref|YP_007296255.1|	-	9.7e-06	25.3	6.6	1.7e-05	24.5	6.6	1.3	1	0	0	1	1	1	1	Mechanosensitive	ion	channel	porin	domain
DUF16	PF01519.16	gi|433593514|ref|YP_007296255.1|	-	0.00055	20.4	7.2	0.0011	19.4	7.2	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF16
UPF0242	PF06785.11	gi|433593514|ref|YP_007296255.1|	-	0.0015	18.7	13.2	0.0025	17.9	13.2	1.3	1	0	0	1	1	1	1	Uncharacterised	protein	family	(UPF0242)	N-terminus
HSBP1	PF06825.12	gi|433593514|ref|YP_007296255.1|	-	0.0024	17.7	6.2	0.016	15.0	0.8	2.6	1	1	0	2	2	2	1	Heat	shock	factor	binding	protein	1
SKA1	PF07160.12	gi|433593514|ref|YP_007296255.1|	-	0.0035	17.2	1.0	0.0057	16.5	1.0	1.3	1	0	0	1	1	1	1	Spindle	and	kinetochore-associated	protein	1
Herpes_UL14	PF03580.14	gi|433593514|ref|YP_007296255.1|	-	0.0048	17.2	1.4	0.0088	16.3	1.4	1.4	1	0	0	1	1	1	1	Herpesvirus	UL14-like	protein
Atg14	PF10186.9	gi|433593514|ref|YP_007296255.1|	-	0.018	14.2	7.6	0.028	13.5	7.6	1.2	1	0	0	1	1	1	0	Vacuolar	sorting	38	and	autophagy-related	subunit	14
DDE_Tnp_IS240	PF13610.6	gi|433593514|ref|YP_007296255.1|	-	0.019	15.2	2.0	0.087	13.1	0.0	2.4	2	1	0	2	2	2	0	DDE	domain
YkyA	PF10368.9	gi|433593514|ref|YP_007296255.1|	-	0.021	14.5	9.5	0.035	13.8	9.5	1.2	1	0	0	1	1	1	0	Putative	cell-wall	binding	lipoprotein
HemX	PF04375.14	gi|433593514|ref|YP_007296255.1|	-	0.024	13.9	4.1	0.038	13.3	4.1	1.2	1	0	0	1	1	1	0	HemX,	putative	uroporphyrinogen-III	C-methyltransferase
PKcGMP_CC	PF16808.5	gi|433593514|ref|YP_007296255.1|	-	0.026	14.4	26.3	0.13	12.1	6.8	2.6	2	0	0	2	2	2	0	Coiled-coil	N-terminus	of	cGMP-dependent	protein	kinase
Fmp27_WPPW	PF10359.9	gi|433593514|ref|YP_007296255.1|	-	0.031	13.1	5.6	0.049	12.5	5.6	1.2	1	0	0	1	1	1	0	RNA	pol	II	promoter	Fmp27	protein	domain
Exonuc_VII_L	PF02601.15	gi|433593514|ref|YP_007296255.1|	-	0.036	13.6	3.6	0.064	12.8	3.6	1.3	1	0	0	1	1	1	0	Exonuclease	VII,	large	subunit
ATG16	PF08614.11	gi|433593514|ref|YP_007296255.1|	-	0.051	13.8	10.6	0.1	12.8	10.6	1.5	1	0	0	1	1	1	0	Autophagy	protein	16	(ATG16)
AAA_13	PF13166.6	gi|433593514|ref|YP_007296255.1|	-	0.061	12.0	8.2	0.088	11.4	8.2	1.1	1	0	0	1	1	1	0	AAA	domain
DZR	PF12773.7	gi|433593514|ref|YP_007296255.1|	-	0.099	12.7	2.7	0.25	11.4	2.7	1.6	1	0	0	1	1	1	0	Double	zinc	ribbon
GAS	PF13851.6	gi|433593514|ref|YP_007296255.1|	-	0.11	11.9	9.7	0.2	11.0	9.7	1.3	1	0	0	1	1	1	0	Growth-arrest	specific	micro-tubule	binding
Cortex-I_coil	PF09304.10	gi|433593514|ref|YP_007296255.1|	-	0.11	12.7	10.5	0.23	11.7	10.5	1.5	1	0	0	1	1	1	0	Cortexillin	I,	coiled	coil
Phage_GPO	PF05929.11	gi|433593514|ref|YP_007296255.1|	-	0.11	12.1	3.1	0.18	11.4	3.1	1.3	1	0	0	1	1	1	0	Phage	capsid	scaffolding	protein	(GPO)	serine	peptidase
DUF3552	PF12072.8	gi|433593514|ref|YP_007296255.1|	-	0.11	11.9	15.6	0.2	11.1	15.6	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3552)
Terminase_4	PF05119.12	gi|433593514|ref|YP_007296255.1|	-	0.14	12.6	0.7	0.73	10.3	0.2	2.3	2	0	0	2	2	2	0	Phage	terminase,	small	subunit
DUF1664	PF07889.12	gi|433593514|ref|YP_007296255.1|	-	0.15	12.1	5.3	0.3	11.1	5.3	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1664)
Spc7	PF08317.11	gi|433593514|ref|YP_007296255.1|	-	0.15	10.9	11.6	0.17	10.7	10.5	1.6	2	0	0	2	2	1	0	Spc7	kinetochore	protein
FliD_C	PF07195.12	gi|433593514|ref|YP_007296255.1|	-	0.17	11.3	3.8	0.26	10.7	3.8	1.3	1	0	0	1	1	1	0	Flagellar	hook-associated	protein	2	C-terminus
TMF_DNA_bd	PF12329.8	gi|433593514|ref|YP_007296255.1|	-	0.17	11.9	12.6	0.34	10.9	12.6	1.5	1	0	0	1	1	1	0	TATA	element	modulatory	factor	1	DNA	binding
Fib_alpha	PF08702.10	gi|433593514|ref|YP_007296255.1|	-	0.18	12.0	5.5	0.39	10.9	5.5	1.5	1	0	0	1	1	1	0	Fibrinogen	alpha/beta	chain	family
CSN5_C	PF18323.1	gi|433593514|ref|YP_007296255.1|	-	0.19	12.7	0.7	5.4	8.0	0.8	2.6	2	0	0	2	2	2	0	Cop9	signalosome	subunit	5	C-terminal	domain
FAM76	PF16046.5	gi|433593514|ref|YP_007296255.1|	-	0.23	10.8	4.0	0.37	10.1	4.0	1.3	1	0	0	1	1	1	0	FAM76	protein
WASH_WAHD	PF11945.8	gi|433593514|ref|YP_007296255.1|	-	0.27	10.7	7.2	0.39	10.2	7.2	1.2	1	0	0	1	1	1	0	WAHD	domain	of	WASH	complex
DUF724	PF05266.14	gi|433593514|ref|YP_007296255.1|	-	0.27	11.0	6.4	0.46	10.3	6.4	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF724)
Allexi_40kDa	PF05549.11	gi|433593514|ref|YP_007296255.1|	-	0.32	10.5	2.8	0.55	9.7	2.8	1.3	1	0	0	1	1	1	0	Allexivirus	40kDa	protein
DUF3584	PF12128.8	gi|433593514|ref|YP_007296255.1|	-	0.36	8.3	7.2	0.51	7.8	7.2	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3584)
TMPIT	PF07851.13	gi|433593514|ref|YP_007296255.1|	-	0.36	10.0	4.1	0.57	9.4	4.1	1.2	1	0	0	1	1	1	0	TMPIT-like	protein
Flagellin_C	PF00700.21	gi|433593514|ref|YP_007296255.1|	-	0.39	11.1	1.2	0.79	10.1	1.2	1.4	1	0	0	1	1	1	0	Bacterial	flagellin	C-terminal	helical	region
ACCA	PF03255.14	gi|433593514|ref|YP_007296255.1|	-	0.5	10.2	5.0	1.3	8.9	5.0	1.7	1	0	0	1	1	1	0	Acetyl	co-enzyme	A	carboxylase	carboxyltransferase	alpha	subunit
DUF1910	PF08928.10	gi|433593514|ref|YP_007296255.1|	-	0.66	10.0	3.8	1.7	8.6	3.8	1.7	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1910)
LUC7	PF03194.15	gi|433593514|ref|YP_007296255.1|	-	0.69	9.5	7.5	1.4	8.5	7.5	1.4	1	0	0	1	1	1	0	LUC7	N_terminus
zf-FPG_IleRS	PF06827.14	gi|433593514|ref|YP_007296255.1|	-	0.81	9.6	4.3	8.7	6.3	0.2	3.3	3	0	0	3	3	3	0	Zinc	finger	found	in	FPG	and	IleRS
ExsD	PF16806.5	gi|433593514|ref|YP_007296255.1|	-	1	9.3	5.1	14	5.6	4.3	2.1	2	0	0	2	2	2	0	Antiactivator	protein	ExsD
DUF4407	PF14362.6	gi|433593514|ref|YP_007296255.1|	-	1	8.7	3.5	1.7	7.9	3.5	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4407)
RmuC	PF02646.16	gi|433593514|ref|YP_007296255.1|	-	1.1	8.4	7.0	1.7	7.7	7.0	1.2	1	0	0	1	1	1	0	RmuC	family
FemAB	PF02388.16	gi|433593514|ref|YP_007296255.1|	-	1.1	8.0	6.1	1.7	7.4	6.1	1.1	1	0	0	1	1	1	0	FemAB	family
Fzo_mitofusin	PF04799.13	gi|433593514|ref|YP_007296255.1|	-	1.4	8.4	6.1	2.5	7.6	6.1	1.3	1	0	0	1	1	1	0	fzo-like	conserved	region
Zn-ribbon_8	PF09723.10	gi|433593514|ref|YP_007296255.1|	-	1.6	8.9	5.5	14	5.9	0.8	2.7	2	0	0	2	2	2	0	Zinc	ribbon	domain
DUF1465	PF07323.12	gi|433593514|ref|YP_007296255.1|	-	1.8	8.4	6.9	1.4	8.7	3.5	2.5	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF1465)
DUF3450	PF11932.8	gi|433593514|ref|YP_007296255.1|	-	2.1	7.6	15.5	1.5	8.1	10.5	2.6	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF3450)
DUF2203	PF09969.9	gi|433593514|ref|YP_007296255.1|	-	2.1	9.1	8.1	5.8	7.7	6.4	2.2	2	0	0	2	2	2	0	Uncharacterized	conserved	protein	(DUF2203)
V_ATPase_I	PF01496.19	gi|433593514|ref|YP_007296255.1|	-	2.3	6.1	4.9	3.2	5.6	4.9	1.1	1	0	0	1	1	1	0	V-type	ATPase	116kDa	subunit	family
MPS2	PF17060.5	gi|433593514|ref|YP_007296255.1|	-	2.4	7.4	6.1	3.7	6.7	6.1	1.2	1	0	0	1	1	1	0	Monopolar	spindle	protein	2
Kre28	PF17097.5	gi|433593514|ref|YP_007296255.1|	-	4	6.3	12.8	0.37	9.7	8.3	1.4	2	0	0	2	2	1	0	Spindle	pole	body	component
ABC_tran_CTD	PF16326.5	gi|433593514|ref|YP_007296255.1|	-	6.3	7.1	22.3	1	9.7	16.9	2.3	2	0	0	2	2	2	0	ABC	transporter	C-terminal	domain
DLP_helical	PF18709.1	gi|433593514|ref|YP_007296255.1|	-	6.7	5.8	8.2	12	5.0	8.2	1.3	1	0	0	1	1	1	0	Dynamin-like	helical	domain
Peptidase_M48	PF01435.18	gi|433593516|ref|YP_007296257.1|	-	2.8e-22	79.4	0.0	5.5e-22	78.5	0.0	1.5	1	0	0	1	1	1	1	Peptidase	family	M48
Peptidase_M56	PF05569.11	gi|433593516|ref|YP_007296257.1|	-	0.01	15.0	3.7	0.025	13.8	0.0	2.5	3	0	0	3	3	3	0	BlaR1	peptidase	M56
DUF3784	PF12650.7	gi|433593516|ref|YP_007296257.1|	-	0.016	15.4	4.6	0.016	15.4	4.6	2.8	3	1	0	3	3	3	0	Domain	of	unknown	function	(DUF3784)
SprT-like	PF10263.9	gi|433593516|ref|YP_007296257.1|	-	0.046	13.6	0.0	0.076	12.9	0.0	1.3	1	0	0	1	1	1	0	SprT-like	family
DUF1275	PF06912.11	gi|433593517|ref|YP_007296258.1|	-	0.056	13.4	3.3	0.063	13.2	3.3	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1275)
CobD_Cbib	PF03186.13	gi|433593517|ref|YP_007296258.1|	-	0.068	12.4	0.6	0.088	12.0	0.6	1.2	1	0	0	1	1	1	0	CobD/Cbib	protein
Wzy_C_2	PF11846.8	gi|433593517|ref|YP_007296258.1|	-	0.19	11.6	0.7	0.25	11.2	0.7	1.2	1	0	0	1	1	1	0	Virulence	factor	membrane-bound	polymerase,	C-terminal
DDE_Tnp_IS66	PF03050.14	gi|433593519|ref|YP_007296260.1|	-	2.7e-49	168.2	0.1	2.7e-49	168.2	0.1	2.1	2	0	0	2	2	2	1	Transposase	IS66	family
SlyX	PF04102.12	gi|433593519|ref|YP_007296260.1|	-	7.4e-09	36.1	7.8	2e-08	34.7	7.8	1.8	1	0	0	1	1	1	1	SlyX
zf-IS66	PF13005.7	gi|433593519|ref|YP_007296260.1|	-	9e-06	26.0	5.0	9e-06	26.0	5.0	2.7	3	0	0	3	3	1	1	zinc-finger	binding	domain	of	transposase	IS66
MscS_porin	PF12795.7	gi|433593519|ref|YP_007296260.1|	-	9.7e-06	25.3	6.6	1.7e-05	24.5	6.6	1.3	1	0	0	1	1	1	1	Mechanosensitive	ion	channel	porin	domain
DUF16	PF01519.16	gi|433593519|ref|YP_007296260.1|	-	0.00055	20.4	7.2	0.0011	19.4	7.2	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF16
UPF0242	PF06785.11	gi|433593519|ref|YP_007296260.1|	-	0.0015	18.7	13.2	0.0025	17.9	13.2	1.3	1	0	0	1	1	1	1	Uncharacterised	protein	family	(UPF0242)	N-terminus
HSBP1	PF06825.12	gi|433593519|ref|YP_007296260.1|	-	0.0024	17.7	6.2	0.016	15.0	0.8	2.6	1	1	0	2	2	2	1	Heat	shock	factor	binding	protein	1
SKA1	PF07160.12	gi|433593519|ref|YP_007296260.1|	-	0.0035	17.2	1.0	0.0057	16.5	1.0	1.3	1	0	0	1	1	1	1	Spindle	and	kinetochore-associated	protein	1
Herpes_UL14	PF03580.14	gi|433593519|ref|YP_007296260.1|	-	0.0048	17.2	1.4	0.0088	16.3	1.4	1.4	1	0	0	1	1	1	1	Herpesvirus	UL14-like	protein
Atg14	PF10186.9	gi|433593519|ref|YP_007296260.1|	-	0.018	14.2	7.6	0.028	13.5	7.6	1.2	1	0	0	1	1	1	0	Vacuolar	sorting	38	and	autophagy-related	subunit	14
DDE_Tnp_IS240	PF13610.6	gi|433593519|ref|YP_007296260.1|	-	0.019	15.2	2.0	0.087	13.1	0.0	2.4	2	1	0	2	2	2	0	DDE	domain
YkyA	PF10368.9	gi|433593519|ref|YP_007296260.1|	-	0.021	14.5	9.5	0.035	13.8	9.5	1.2	1	0	0	1	1	1	0	Putative	cell-wall	binding	lipoprotein
HemX	PF04375.14	gi|433593519|ref|YP_007296260.1|	-	0.024	13.9	4.1	0.038	13.3	4.1	1.2	1	0	0	1	1	1	0	HemX,	putative	uroporphyrinogen-III	C-methyltransferase
PKcGMP_CC	PF16808.5	gi|433593519|ref|YP_007296260.1|	-	0.026	14.4	26.3	0.13	12.1	6.8	2.6	2	0	0	2	2	2	0	Coiled-coil	N-terminus	of	cGMP-dependent	protein	kinase
Fmp27_WPPW	PF10359.9	gi|433593519|ref|YP_007296260.1|	-	0.031	13.1	5.6	0.049	12.5	5.6	1.2	1	0	0	1	1	1	0	RNA	pol	II	promoter	Fmp27	protein	domain
Exonuc_VII_L	PF02601.15	gi|433593519|ref|YP_007296260.1|	-	0.036	13.6	3.6	0.064	12.8	3.6	1.3	1	0	0	1	1	1	0	Exonuclease	VII,	large	subunit
ATG16	PF08614.11	gi|433593519|ref|YP_007296260.1|	-	0.051	13.8	10.6	0.1	12.8	10.6	1.5	1	0	0	1	1	1	0	Autophagy	protein	16	(ATG16)
AAA_13	PF13166.6	gi|433593519|ref|YP_007296260.1|	-	0.061	12.0	8.2	0.088	11.4	8.2	1.1	1	0	0	1	1	1	0	AAA	domain
DZR	PF12773.7	gi|433593519|ref|YP_007296260.1|	-	0.099	12.7	2.7	0.25	11.4	2.7	1.6	1	0	0	1	1	1	0	Double	zinc	ribbon
GAS	PF13851.6	gi|433593519|ref|YP_007296260.1|	-	0.11	11.9	9.7	0.2	11.0	9.7	1.3	1	0	0	1	1	1	0	Growth-arrest	specific	micro-tubule	binding
Cortex-I_coil	PF09304.10	gi|433593519|ref|YP_007296260.1|	-	0.11	12.7	10.5	0.23	11.7	10.5	1.5	1	0	0	1	1	1	0	Cortexillin	I,	coiled	coil
Phage_GPO	PF05929.11	gi|433593519|ref|YP_007296260.1|	-	0.11	12.1	3.1	0.18	11.4	3.1	1.3	1	0	0	1	1	1	0	Phage	capsid	scaffolding	protein	(GPO)	serine	peptidase
DUF3552	PF12072.8	gi|433593519|ref|YP_007296260.1|	-	0.11	11.9	15.6	0.2	11.1	15.6	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3552)
Terminase_4	PF05119.12	gi|433593519|ref|YP_007296260.1|	-	0.14	12.6	0.7	0.73	10.3	0.2	2.3	2	0	0	2	2	2	0	Phage	terminase,	small	subunit
DUF1664	PF07889.12	gi|433593519|ref|YP_007296260.1|	-	0.15	12.1	5.3	0.3	11.1	5.3	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1664)
Spc7	PF08317.11	gi|433593519|ref|YP_007296260.1|	-	0.15	10.9	11.6	0.17	10.7	10.5	1.6	2	0	0	2	2	1	0	Spc7	kinetochore	protein
FliD_C	PF07195.12	gi|433593519|ref|YP_007296260.1|	-	0.17	11.3	3.8	0.26	10.7	3.8	1.3	1	0	0	1	1	1	0	Flagellar	hook-associated	protein	2	C-terminus
TMF_DNA_bd	PF12329.8	gi|433593519|ref|YP_007296260.1|	-	0.17	11.9	12.6	0.34	10.9	12.6	1.5	1	0	0	1	1	1	0	TATA	element	modulatory	factor	1	DNA	binding
Fib_alpha	PF08702.10	gi|433593519|ref|YP_007296260.1|	-	0.18	12.0	5.5	0.39	10.9	5.5	1.5	1	0	0	1	1	1	0	Fibrinogen	alpha/beta	chain	family
CSN5_C	PF18323.1	gi|433593519|ref|YP_007296260.1|	-	0.19	12.7	0.7	5.4	8.0	0.8	2.6	2	0	0	2	2	2	0	Cop9	signalosome	subunit	5	C-terminal	domain
FAM76	PF16046.5	gi|433593519|ref|YP_007296260.1|	-	0.23	10.8	4.0	0.37	10.1	4.0	1.3	1	0	0	1	1	1	0	FAM76	protein
WASH_WAHD	PF11945.8	gi|433593519|ref|YP_007296260.1|	-	0.27	10.7	7.2	0.39	10.2	7.2	1.2	1	0	0	1	1	1	0	WAHD	domain	of	WASH	complex
DUF724	PF05266.14	gi|433593519|ref|YP_007296260.1|	-	0.27	11.0	6.4	0.46	10.3	6.4	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF724)
Allexi_40kDa	PF05549.11	gi|433593519|ref|YP_007296260.1|	-	0.32	10.5	2.8	0.55	9.7	2.8	1.3	1	0	0	1	1	1	0	Allexivirus	40kDa	protein
DUF3584	PF12128.8	gi|433593519|ref|YP_007296260.1|	-	0.36	8.3	7.2	0.51	7.8	7.2	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3584)
TMPIT	PF07851.13	gi|433593519|ref|YP_007296260.1|	-	0.36	10.0	4.1	0.57	9.4	4.1	1.2	1	0	0	1	1	1	0	TMPIT-like	protein
Flagellin_C	PF00700.21	gi|433593519|ref|YP_007296260.1|	-	0.39	11.1	1.2	0.79	10.1	1.2	1.4	1	0	0	1	1	1	0	Bacterial	flagellin	C-terminal	helical	region
ACCA	PF03255.14	gi|433593519|ref|YP_007296260.1|	-	0.5	10.2	5.0	1.3	8.9	5.0	1.7	1	0	0	1	1	1	0	Acetyl	co-enzyme	A	carboxylase	carboxyltransferase	alpha	subunit
DUF1910	PF08928.10	gi|433593519|ref|YP_007296260.1|	-	0.66	10.0	3.8	1.7	8.6	3.8	1.7	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1910)
LUC7	PF03194.15	gi|433593519|ref|YP_007296260.1|	-	0.69	9.5	7.5	1.4	8.5	7.5	1.4	1	0	0	1	1	1	0	LUC7	N_terminus
zf-FPG_IleRS	PF06827.14	gi|433593519|ref|YP_007296260.1|	-	0.81	9.6	4.3	8.7	6.3	0.2	3.3	3	0	0	3	3	3	0	Zinc	finger	found	in	FPG	and	IleRS
ExsD	PF16806.5	gi|433593519|ref|YP_007296260.1|	-	1	9.3	5.1	14	5.6	4.3	2.1	2	0	0	2	2	2	0	Antiactivator	protein	ExsD
DUF4407	PF14362.6	gi|433593519|ref|YP_007296260.1|	-	1	8.7	3.5	1.7	7.9	3.5	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4407)
RmuC	PF02646.16	gi|433593519|ref|YP_007296260.1|	-	1.1	8.4	7.0	1.7	7.7	7.0	1.2	1	0	0	1	1	1	0	RmuC	family
FemAB	PF02388.16	gi|433593519|ref|YP_007296260.1|	-	1.1	8.0	6.1	1.7	7.4	6.1	1.1	1	0	0	1	1	1	0	FemAB	family
Fzo_mitofusin	PF04799.13	gi|433593519|ref|YP_007296260.1|	-	1.4	8.4	6.1	2.5	7.6	6.1	1.3	1	0	0	1	1	1	0	fzo-like	conserved	region
Zn-ribbon_8	PF09723.10	gi|433593519|ref|YP_007296260.1|	-	1.6	8.9	5.5	14	5.9	0.8	2.7	2	0	0	2	2	2	0	Zinc	ribbon	domain
DUF1465	PF07323.12	gi|433593519|ref|YP_007296260.1|	-	1.8	8.4	6.9	1.4	8.7	3.5	2.5	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF1465)
DUF3450	PF11932.8	gi|433593519|ref|YP_007296260.1|	-	2.1	7.6	15.5	1.5	8.1	10.5	2.6	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF3450)
DUF2203	PF09969.9	gi|433593519|ref|YP_007296260.1|	-	2.1	9.1	8.1	5.8	7.7	6.4	2.2	2	0	0	2	2	2	0	Uncharacterized	conserved	protein	(DUF2203)
V_ATPase_I	PF01496.19	gi|433593519|ref|YP_007296260.1|	-	2.3	6.1	4.9	3.2	5.6	4.9	1.1	1	0	0	1	1	1	0	V-type	ATPase	116kDa	subunit	family
MPS2	PF17060.5	gi|433593519|ref|YP_007296260.1|	-	2.4	7.4	6.1	3.7	6.7	6.1	1.2	1	0	0	1	1	1	0	Monopolar	spindle	protein	2
Kre28	PF17097.5	gi|433593519|ref|YP_007296260.1|	-	4	6.3	12.8	0.37	9.7	8.3	1.4	2	0	0	2	2	1	0	Spindle	pole	body	component
ABC_tran_CTD	PF16326.5	gi|433593519|ref|YP_007296260.1|	-	6.3	7.1	22.3	1	9.7	16.9	2.3	2	0	0	2	2	2	0	ABC	transporter	C-terminal	domain
DLP_helical	PF18709.1	gi|433593519|ref|YP_007296260.1|	-	6.7	5.8	8.2	12	5.0	8.2	1.3	1	0	0	1	1	1	0	Dynamin-like	helical	domain
PQQ_2	PF13360.6	gi|433593520|ref|YP_007296261.1|	-	1e-29	103.8	17.7	3.1e-12	46.6	3.0	3.2	1	1	2	3	3	3	3	PQQ-like	domain
PQQ_3	PF13570.6	gi|433593520|ref|YP_007296261.1|	-	3.1e-20	72.0	24.5	0.0018	18.7	0.0	8.6	8	0	0	8	8	8	6	PQQ-like	domain
PQQ	PF01011.21	gi|433593520|ref|YP_007296261.1|	-	1.4e-11	43.7	13.5	0.0074	16.2	0.2	7.9	8	0	0	8	8	8	4	PQQ	enzyme	repeat
Me-amine-dh_H	PF06433.11	gi|433593520|ref|YP_007296261.1|	-	0.045	12.6	0.0	0.094	11.6	0.0	1.4	1	0	0	1	1	1	0	Methylamine	dehydrogenase	heavy	chain	(MADH)
Yip1	PF04893.17	gi|433593521|ref|YP_007296262.1|	-	7e-10	38.9	12.0	1.2e-09	38.1	12.0	1.4	1	1	0	1	1	1	1	Yip1	domain
IncD	PF17628.2	gi|433593521|ref|YP_007296262.1|	-	4.2	7.1	4.9	5.1	6.9	4.1	1.6	1	1	0	1	1	1	0	Inclusion	membrane	protein	D
Peptidase_M48	PF01435.18	gi|433593522|ref|YP_007296263.1|	-	9.8e-26	90.7	0.0	1.8e-25	89.9	0.0	1.4	1	0	0	1	1	1	1	Peptidase	family	M48
Peptidase_M56	PF05569.11	gi|433593522|ref|YP_007296263.1|	-	0.0054	16.0	1.9	0.0054	16.0	1.9	1.9	1	1	1	2	2	2	1	BlaR1	peptidase	M56
DUF4157	PF13699.6	gi|433593522|ref|YP_007296263.1|	-	1.3	9.3	4.4	0.43	10.9	0.3	2.0	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4157)
Phage_holin_3_6	PF07332.11	gi|433593522|ref|YP_007296263.1|	-	1.8	8.7	12.8	0.072	13.1	4.4	2.2	2	0	0	2	2	2	0	Putative	Actinobacterial	Holin-X,	holin	superfamily	III
Neurensin	PF14927.6	gi|433593522|ref|YP_007296263.1|	-	3.8	7.2	4.9	5.1	6.8	0.0	2.5	1	1	1	2	2	2	0	Neurensin
DUF2583	PF10762.9	gi|433593522|ref|YP_007296263.1|	-	5	7.6	10.9	11	6.5	0.4	3.2	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF2583)
DDE_Tnp_IS1595	PF12762.7	gi|433593523|ref|YP_007296264.1|	-	4.5e-15	56.0	0.1	1.1e-14	54.7	0.0	1.7	2	0	0	2	2	2	1	ISXO2-like	transposase	domain
Zn_Tnp_IS1595	PF12760.7	gi|433593523|ref|YP_007296264.1|	-	0.0002	21.3	3.2	0.0005	20.0	3.2	1.6	1	0	0	1	1	1	1	Transposase	zinc-ribbon	domain
Zn_Tnp_IS1	PF03811.13	gi|433593523|ref|YP_007296264.1|	-	0.00092	18.9	0.7	0.00092	18.9	0.7	1.9	2	0	0	2	2	2	1	InsA	N-terminal	domain
zf-Sec23_Sec24	PF04810.15	gi|433593523|ref|YP_007296264.1|	-	0.14	12.2	0.8	0.59	10.2	0.2	2.3	3	0	0	3	3	3	0	Sec23/Sec24	zinc	finger
SpoIIIAH	PF12685.7	gi|433593524|ref|YP_007296265.1|	-	1.9	8.3	15.1	2.7	7.8	15.1	1.3	1	1	0	1	1	1	0	SpoIIIAH-like	protein
AAA_31	PF13614.6	gi|433593525|ref|YP_007296266.1|	-	1.1e-23	84.1	0.0	1.6e-23	83.6	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
CbiA	PF01656.23	gi|433593525|ref|YP_007296266.1|	-	5.7e-15	55.5	0.0	9.3e-15	54.8	0.0	1.3	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
MipZ	PF09140.11	gi|433593525|ref|YP_007296266.1|	-	3.3e-06	26.6	0.0	0.0023	17.3	0.0	2.2	2	0	0	2	2	2	2	ATPase	MipZ
CBP_BcsQ	PF06564.12	gi|433593525|ref|YP_007296266.1|	-	3.3e-05	23.5	0.1	9.6e-05	22.0	0.1	1.6	1	1	0	1	1	1	1	Cellulose	biosynthesis	protein	BcsQ
ParA	PF10609.9	gi|433593525|ref|YP_007296266.1|	-	0.00019	21.0	0.5	0.00067	19.2	0.5	1.9	1	1	0	1	1	1	1	NUBPL	iron-transfer	P-loop	NTPase
ArsA_ATPase	PF02374.15	gi|433593525|ref|YP_007296266.1|	-	0.00054	19.3	0.2	0.001	18.3	0.2	1.5	1	1	0	1	1	1	1	Anion-transporting	ATPase
AAA_25	PF13481.6	gi|433593525|ref|YP_007296266.1|	-	0.0095	15.5	0.3	0.026	14.1	0.3	1.9	1	1	0	1	1	1	1	AAA	domain
Fer4_NifH	PF00142.18	gi|433593525|ref|YP_007296266.1|	-	0.023	14.1	0.0	0.053	13.0	0.0	1.5	1	0	0	1	1	1	0	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
CLP1_P	PF16575.5	gi|433593525|ref|YP_007296266.1|	-	0.027	14.3	0.0	0.048	13.5	0.0	1.3	1	0	0	1	1	1	0	mRNA	cleavage	and	polyadenylation	factor	CLP1	P-loop
SRP54	PF00448.22	gi|433593525|ref|YP_007296266.1|	-	0.042	13.5	0.2	1.4	8.5	0.0	2.7	3	0	0	3	3	3	0	SRP54-type	protein,	GTPase	domain
NTPase_1	PF03266.15	gi|433593525|ref|YP_007296266.1|	-	0.064	13.2	0.0	0.18	11.7	0.0	1.7	2	0	0	2	2	2	0	NTPase
Cdc6_C	PF09079.11	gi|433593526|ref|YP_007296267.1|	-	3.2e-16	59.1	0.6	1.1e-15	57.3	0.1	2.1	2	0	0	2	2	2	1	CDC6,	C	terminal	winged	helix	domain
AAA_22	PF13401.6	gi|433593526|ref|YP_007296267.1|	-	2.3e-11	44.1	0.5	4.2e-10	40.0	0.0	2.2	2	0	0	2	2	2	1	AAA	domain
AAA_16	PF13191.6	gi|433593526|ref|YP_007296267.1|	-	3.3e-08	34.1	0.6	9.2e-08	32.6	0.0	2.1	2	1	0	2	2	2	1	AAA	ATPase	domain
ATPase_2	PF01637.18	gi|433593526|ref|YP_007296267.1|	-	1.5e-05	25.0	0.1	3.1e-05	24.0	0.1	1.5	1	0	0	1	1	1	1	ATPase	domain	predominantly	from	Archaea
TniB	PF05621.11	gi|433593526|ref|YP_007296267.1|	-	4.6e-05	22.9	0.0	9.5e-05	21.9	0.0	1.4	1	0	0	1	1	1	1	Bacterial	TniB	protein
AAA	PF00004.29	gi|433593526|ref|YP_007296267.1|	-	0.00065	20.1	0.3	0.0041	17.5	0.3	2.3	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Mg_chelatase	PF01078.21	gi|433593526|ref|YP_007296267.1|	-	0.005	16.3	0.0	0.0078	15.6	0.0	1.2	1	0	0	1	1	1	1	Magnesium	chelatase,	subunit	ChlI
NACHT	PF05729.12	gi|433593526|ref|YP_007296267.1|	-	0.0057	16.6	0.0	0.01	15.8	0.0	1.4	1	0	0	1	1	1	1	NACHT	domain
DUF815	PF05673.13	gi|433593526|ref|YP_007296267.1|	-	0.018	14.2	0.3	0.042	13.0	0.0	1.7	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF815)
Microtub_bd	PF16796.5	gi|433593526|ref|YP_007296267.1|	-	0.027	14.4	0.0	0.05	13.5	0.0	1.4	1	0	0	1	1	1	0	Microtubule	binding
AAA_7	PF12775.7	gi|433593526|ref|YP_007296267.1|	-	0.028	13.9	0.0	0.051	13.1	0.0	1.3	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
NB-ARC	PF00931.22	gi|433593526|ref|YP_007296267.1|	-	0.049	12.8	0.0	0.11	11.7	0.0	1.6	2	0	0	2	2	2	0	NB-ARC	domain
AAA_19	PF13245.6	gi|433593526|ref|YP_007296267.1|	-	0.056	13.8	0.0	0.19	12.0	0.0	1.9	1	1	0	1	1	1	0	AAA	domain
P-II	PF00543.22	gi|433593526|ref|YP_007296267.1|	-	0.067	13.8	0.1	0.23	12.1	0.0	1.9	2	0	0	2	2	2	0	Nitrogen	regulatory	protein	P-II
Mnd1	PF03962.15	gi|433593526|ref|YP_007296267.1|	-	0.11	12.7	0.0	3.6	7.9	0.0	2.6	2	0	0	2	2	2	0	Mnd1	HTH	domain
CBFB_NFYA	PF02045.15	gi|433593526|ref|YP_007296267.1|	-	0.17	12.5	0.0	0.69	10.6	0.0	2.0	2	0	0	2	2	2	0	CCAAT-binding	transcription	factor	(CBF-B/NF-YA)	subunit	B
DDE_Tnp_1	PF01609.21	gi|433593527|ref|YP_007296268.1|	-	3.2e-10	40.0	3.3	4.9e-10	39.4	3.3	1.2	1	0	0	1	1	1	1	Transposase	DDE	domain
DUF772	PF05598.11	gi|433593527|ref|YP_007296268.1|	-	0.17	11.9	0.5	0.48	10.5	0.3	1.9	2	0	0	2	2	2	0	Transposase	domain	(DUF772)
DDE_Tnp_1	PF01609.21	gi|433593528|ref|YP_007296269.1|	-	0.04	13.6	0.1	0.12	12.0	0.1	1.7	1	1	0	1	1	1	0	Transposase	DDE	domain
Calci_bind_CcbP	PF11535.8	gi|433593529|ref|YP_007296270.1|	-	6.8e-41	139.0	0.3	8e-41	138.8	0.3	1.1	1	0	0	1	1	1	1	Calcium	binding
DUF4635	PF15466.6	gi|433593529|ref|YP_007296270.1|	-	0.08	12.5	0.1	0.1	12.1	0.1	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4635)
ERCC3_RAD25_C	PF16203.5	gi|433593530|ref|YP_007296271.1|	-	4.1e-23	81.9	0.3	6.1e-23	81.3	0.3	1.2	1	0	0	1	1	1	1	ERCC3/RAD25/XPB	C-terminal	helicase
ResIII	PF04851.15	gi|433593530|ref|YP_007296271.1|	-	2e-21	76.8	0.0	8.4e-21	74.7	0.0	1.9	2	0	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
Helicase_C	PF00271.31	gi|433593530|ref|YP_007296271.1|	-	4.9e-17	62.3	0.1	4.9e-17	62.3	0.1	2.0	3	0	0	3	3	3	1	Helicase	conserved	C-terminal	domain
XPB_DRD	PF18458.1	gi|433593530|ref|YP_007296271.1|	-	5.3e-13	48.6	1.3	2.4e-12	46.5	1.3	2.2	1	0	0	1	1	1	1	Xeroderma	pigmentosum	group	B	helicase	damage	recognition	domain
DEAD	PF00270.29	gi|433593530|ref|YP_007296271.1|	-	7.3e-09	35.6	0.0	1.9e-08	34.3	0.0	1.7	1	0	0	1	1	1	1	DEAD/DEAH	box	helicase
Helicase_C_2	PF13307.6	gi|433593530|ref|YP_007296271.1|	-	0.1	12.8	0.6	4.7	7.4	0.0	3.2	1	1	1	2	2	2	0	Helicase	C-terminal	domain
IstB_IS21	PF01695.17	gi|433593530|ref|YP_007296271.1|	-	0.11	12.2	0.0	1.4	8.6	0.0	2.4	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
DUF790	PF05626.11	gi|433593531|ref|YP_007296272.1|	-	8.4e-139	462.6	0.0	9.5e-139	462.4	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF790)
CSTF2_hinge	PF14327.6	gi|433593532|ref|YP_007296273.1|	-	0.031	14.7	0.0	0.051	14.0	0.0	1.2	1	0	0	1	1	1	0	Hinge	domain	of	cleavage	stimulation	factor	subunit	2
DUF2274	PF10038.9	gi|433593532|ref|YP_007296273.1|	-	0.13	12.7	1.2	4.1	7.9	0.1	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2274)
MarR_2	PF12802.7	gi|433593533|ref|YP_007296274.1|	-	2.3e-15	56.2	1.6	1.6e-08	34.3	0.6	2.6	2	0	0	2	2	2	2	MarR	family
TrmB	PF01978.19	gi|433593533|ref|YP_007296274.1|	-	4.8e-10	39.2	0.1	0.00017	21.4	0.0	2.6	2	0	0	2	2	2	2	Sugar-specific	transcriptional	regulator	TrmB
HTH_24	PF13412.6	gi|433593533|ref|YP_007296274.1|	-	5.5e-09	35.4	0.1	0.0032	17.0	0.0	2.5	2	0	0	2	2	2	2	Winged	helix-turn-helix	DNA-binding
MarR	PF01047.22	gi|433593533|ref|YP_007296274.1|	-	8.8e-08	32.0	0.0	0.0045	16.9	0.0	2.5	2	0	0	2	2	2	2	MarR	family
HTH_27	PF13463.6	gi|433593533|ref|YP_007296274.1|	-	2.2e-07	31.3	1.1	3.7e-06	27.3	0.3	2.4	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
Rrf2	PF02082.20	gi|433593533|ref|YP_007296274.1|	-	2.4e-07	31.0	0.0	0.016	15.5	0.0	2.4	2	0	0	2	2	2	2	Transcriptional	regulator
HTH_IclR	PF09339.10	gi|433593533|ref|YP_007296274.1|	-	3.8e-07	29.8	0.2	0.041	13.7	0.1	2.9	3	0	0	3	3	2	2	IclR	helix-turn-helix	domain
HTH_Crp_2	PF13545.6	gi|433593533|ref|YP_007296274.1|	-	6.7e-07	29.2	0.0	0.0006	19.7	0.0	2.5	2	0	0	2	2	2	2	Crp-like	helix-turn-helix	domain
HTH_20	PF12840.7	gi|433593533|ref|YP_007296274.1|	-	7.7e-07	29.1	0.2	0.048	13.7	0.0	2.6	2	0	0	2	2	2	2	Helix-turn-helix	domain
HTH_29	PF13551.6	gi|433593533|ref|YP_007296274.1|	-	5e-06	26.4	0.2	0.035	14.1	0.0	2.6	2	0	0	2	2	2	2	Winged	helix-turn	helix
HTH_23	PF13384.6	gi|433593533|ref|YP_007296274.1|	-	6.1e-06	25.9	0.0	0.019	14.7	0.0	2.6	2	0	0	2	2	2	2	Homeodomain-like	domain
HTH_28	PF13518.6	gi|433593533|ref|YP_007296274.1|	-	0.00011	22.2	0.3	0.038	14.1	0.0	2.9	3	0	0	3	3	3	1	Helix-turn-helix	domain
GntR	PF00392.21	gi|433593533|ref|YP_007296274.1|	-	0.00063	19.4	0.1	1.8	8.2	0.0	2.7	3	0	0	3	3	3	2	Bacterial	regulatory	proteins,	gntR	family
Crp	PF00325.20	gi|433593533|ref|YP_007296274.1|	-	0.001	18.7	1.2	0.026	14.2	0.3	2.5	2	0	0	2	2	2	1	Bacterial	regulatory	proteins,	crp	family
Penicillinase_R	PF03965.16	gi|433593533|ref|YP_007296274.1|	-	0.0011	19.3	0.0	1.9	8.9	0.0	2.5	2	0	0	2	2	2	2	Penicillinase	repressor
HTH_5	PF01022.20	gi|433593533|ref|YP_007296274.1|	-	0.0022	17.8	0.0	3.2	7.7	0.0	2.5	2	0	0	2	2	2	2	Bacterial	regulatory	protein,	arsR	family
DUF746	PF05344.11	gi|433593533|ref|YP_007296274.1|	-	0.013	15.3	0.0	0.044	13.6	0.0	1.9	1	0	0	1	1	1	0	Domain	of	Unknown	Function	(DUF746)
HTH_38	PF13936.6	gi|433593533|ref|YP_007296274.1|	-	0.032	14.0	0.8	2.9	7.7	0.0	2.7	3	0	0	3	3	3	0	Helix-turn-helix	domain
LZ_Tnp_IS481	PF13011.6	gi|433593533|ref|YP_007296274.1|	-	0.11	13.0	0.0	0.25	11.9	0.0	1.5	1	0	0	1	1	1	0	leucine-zipper	of	insertion	element	IS481
HTH_41	PF14502.6	gi|433593533|ref|YP_007296274.1|	-	0.18	11.5	0.0	0.7	9.6	0.0	1.9	2	0	0	2	2	2	0	Helix-turn-helix	domain
RPA_C	PF08784.11	gi|433593533|ref|YP_007296274.1|	-	0.21	12.2	0.0	0.45	11.2	0.0	1.5	1	0	0	1	1	1	0	Replication	protein	A	C	terminal
DUF2204	PF09970.9	gi|433593534|ref|YP_007296275.1|	-	0.0017	18.0	0.3	0.021	14.5	0.1	2.2	2	0	0	2	2	2	1	Nucleotidyl	transferase	of	unknown	function	(DUF2204)
HTH_20	PF12840.7	gi|433593534|ref|YP_007296275.1|	-	0.0039	17.2	0.1	0.0084	16.1	0.1	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_AsnC-type	PF13404.6	gi|433593534|ref|YP_007296275.1|	-	0.011	15.5	0.0	0.031	14.1	0.0	1.8	1	0	0	1	1	1	0	AsnC-type	helix-turn-helix	domain
IF2_N	PF04760.15	gi|433593534|ref|YP_007296275.1|	-	0.11	12.4	0.0	0.31	10.9	0.0	1.8	1	0	0	1	1	1	0	Translation	initiation	factor	IF-2,	N-terminal	region
SWIM	PF04434.17	gi|433593536|ref|YP_007296277.1|	-	0.00026	20.6	0.3	0.00071	19.2	0.3	1.7	1	1	0	1	1	1	1	SWIM	zinc	finger
DUF4379	PF14311.6	gi|433593536|ref|YP_007296277.1|	-	0.027	14.8	0.2	0.068	13.5	0.2	1.6	1	0	0	1	1	1	0	Probable	Zinc-ribbon	domain
Rubredoxin_2	PF18073.1	gi|433593536|ref|YP_007296277.1|	-	0.11	12.3	1.8	0.2	11.4	1.8	1.4	1	0	0	1	1	1	0	Rubredoxin	metal	binding	domain
Zn-ribbon_8	PF09723.10	gi|433593536|ref|YP_007296277.1|	-	3.4	7.9	7.0	0.69	10.1	0.9	2.5	2	1	0	2	2	2	0	Zinc	ribbon	domain
TrmB	PF01978.19	gi|433593539|ref|YP_007296280.1|	-	0.00032	20.5	0.0	0.00052	19.8	0.0	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_27	PF13463.6	gi|433593539|ref|YP_007296280.1|	-	0.0023	18.4	0.2	0.022	15.3	0.1	2.1	1	1	0	2	2	2	1	Winged	helix	DNA-binding	domain
HTH_24	PF13412.6	gi|433593539|ref|YP_007296280.1|	-	0.0098	15.4	0.1	0.02	14.5	0.1	1.6	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
Cdc6_C	PF09079.11	gi|433593539|ref|YP_007296280.1|	-	0.014	15.4	0.0	0.026	14.5	0.0	1.4	1	0	0	1	1	1	0	CDC6,	C	terminal	winged	helix	domain
HTH_20	PF12840.7	gi|433593539|ref|YP_007296280.1|	-	0.051	13.6	0.2	0.079	13.0	0.2	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_1	PF00126.27	gi|433593539|ref|YP_007296280.1|	-	0.079	12.9	0.0	0.15	12.1	0.0	1.5	1	0	0	1	1	1	0	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
OrfB_Zn_ribbon	PF07282.11	gi|433593540|ref|YP_007296281.1|	-	8.3e-24	83.3	1.4	1.5e-23	82.5	1.4	1.4	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
OrfB_IS605	PF01385.19	gi|433593540|ref|YP_007296281.1|	-	3.5e-19	69.2	0.0	8.5e-19	68.0	0.0	1.6	1	0	0	1	1	1	1	Probable	transposase
C1_2	PF03107.16	gi|433593540|ref|YP_007296281.1|	-	0.011	16.0	1.2	0.03	14.6	1.2	1.7	1	0	0	1	1	1	0	C1	domain
Ribosomal_L37ae	PF01780.19	gi|433593540|ref|YP_007296281.1|	-	0.046	13.8	2.6	0.38	10.9	0.6	2.5	2	0	0	2	2	2	0	Ribosomal	L37ae	protein	family
Zn_Tnp_IS1595	PF12760.7	gi|433593540|ref|YP_007296281.1|	-	0.14	12.2	3.5	0.29	11.2	3.5	1.5	1	0	0	1	1	1	0	Transposase	zinc-ribbon	domain
DDE_3	PF13358.6	gi|433593541|ref|YP_007296282.1|	-	1.6e-14	53.9	0.0	1.5e-13	50.8	0.0	2.1	2	0	0	2	2	2	1	DDE	superfamily	endonuclease
HTH_32	PF13565.6	gi|433593541|ref|YP_007296282.1|	-	2.3e-11	44.1	0.3	9.4e-11	42.2	0.0	2.1	2	0	0	2	2	2	1	Homeodomain-like	domain
HTH_29	PF13551.6	gi|433593541|ref|YP_007296282.1|	-	4.4e-10	39.4	0.0	1.4e-09	37.9	0.0	1.9	1	0	0	1	1	1	1	Winged	helix-turn	helix
HTH_23	PF13384.6	gi|433593541|ref|YP_007296282.1|	-	6.7e-09	35.3	0.0	1.5e-08	34.2	0.0	1.6	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_33	PF13592.6	gi|433593541|ref|YP_007296282.1|	-	1.2e-05	24.8	0.0	8.6e-05	22.1	0.0	2.2	2	0	0	2	2	2	1	Winged	helix-turn	helix
HTH_28	PF13518.6	gi|433593541|ref|YP_007296282.1|	-	2.7e-05	24.2	0.0	6.8e-05	22.9	0.0	1.7	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_7	PF02796.15	gi|433593541|ref|YP_007296282.1|	-	0.0018	18.3	0.1	0.0041	17.2	0.1	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain	of	resolvase
Sigma70_r4	PF04545.16	gi|433593541|ref|YP_007296282.1|	-	0.0023	17.4	0.0	0.0074	15.8	0.0	1.8	1	0	0	1	1	1	1	Sigma-70,	region	4
DDE_1	PF03184.19	gi|433593541|ref|YP_007296282.1|	-	0.0027	17.4	0.0	0.0045	16.6	0.0	1.3	1	0	0	1	1	1	1	DDE	superfamily	endonuclease
DUF746	PF05344.11	gi|433593541|ref|YP_007296282.1|	-	0.016	15.1	0.0	0.04	13.8	0.0	1.7	1	0	0	1	1	1	0	Domain	of	Unknown	Function	(DUF746)
LZ_Tnp_IS481	PF13011.6	gi|433593541|ref|YP_007296282.1|	-	0.041	14.4	0.0	0.091	13.3	0.0	1.5	1	0	0	1	1	1	0	leucine-zipper	of	insertion	element	IS481
Sigma70_r4_2	PF08281.12	gi|433593541|ref|YP_007296282.1|	-	0.058	13.1	0.1	0.2	11.3	0.0	1.9	2	0	0	2	2	2	0	Sigma-70,	region	4
rve	PF00665.26	gi|433593541|ref|YP_007296282.1|	-	0.064	13.5	0.0	0.14	12.3	0.0	1.5	1	0	0	1	1	1	0	Integrase	core	domain
MacB_PCD	PF12704.7	gi|433593542|ref|YP_007296283.1|	-	5.6e-19	69.3	5.9	5.6e-19	69.3	5.9	2.1	2	0	0	2	2	2	1	MacB-like	periplasmic	core	domain
FtsX	PF02687.21	gi|433593542|ref|YP_007296283.1|	-	5.6e-08	33.1	7.4	1.1e-07	32.2	1.4	3.0	3	0	0	3	3	3	1	FtsX-like	permease	family
DUF4064	PF13273.6	gi|433593542|ref|YP_007296283.1|	-	0.83	10.0	7.1	2.5	8.4	1.4	3.3	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF4064)
FtsX	PF02687.21	gi|433593543|ref|YP_007296284.1|	-	1.3e-05	25.5	6.3	1.3e-05	25.5	6.3	3.1	3	0	0	3	3	3	2	FtsX-like	permease	family
ABC_tran	PF00005.27	gi|433593544|ref|YP_007296285.1|	-	4.3e-34	118.0	0.0	5.7e-34	117.6	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
SMC_N	PF02463.19	gi|433593544|ref|YP_007296285.1|	-	8e-05	22.2	0.1	0.019	14.4	0.0	2.1	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_21	PF13304.6	gi|433593544|ref|YP_007296285.1|	-	0.00034	20.5	0.4	0.085	12.6	0.2	2.1	1	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_29	PF13555.6	gi|433593544|ref|YP_007296285.1|	-	0.0015	18.2	0.2	0.0029	17.3	0.2	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_30	PF13604.6	gi|433593544|ref|YP_007296285.1|	-	0.004	16.9	3.7	0.02	14.6	3.7	2.0	1	1	0	1	1	1	1	AAA	domain
AAA_16	PF13191.6	gi|433593544|ref|YP_007296285.1|	-	0.0075	16.7	1.1	0.014	15.8	1.0	1.5	1	1	0	1	1	1	1	AAA	ATPase	domain
RsgA_GTPase	PF03193.16	gi|433593544|ref|YP_007296285.1|	-	0.046	13.6	0.1	0.078	12.9	0.1	1.3	1	0	0	1	1	1	0	RsgA	GTPase
MeaB	PF03308.16	gi|433593544|ref|YP_007296285.1|	-	0.056	12.4	2.5	0.09	11.7	2.5	1.5	1	1	0	1	1	1	0	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
IstB_IS21	PF01695.17	gi|433593544|ref|YP_007296285.1|	-	0.058	13.1	0.1	0.23	11.2	0.0	1.8	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
AAA_33	PF13671.6	gi|433593544|ref|YP_007296285.1|	-	0.088	13.0	0.4	0.17	12.0	0.3	1.6	1	1	0	1	1	1	0	AAA	domain
AAA_22	PF13401.6	gi|433593544|ref|YP_007296285.1|	-	0.23	11.7	1.0	1.9	8.8	1.0	2.1	1	1	0	1	1	1	0	AAA	domain
YdjM	PF04307.14	gi|433593545|ref|YP_007296286.1|	-	1.9e-13	50.1	6.5	2.4e-13	49.7	6.5	1.1	1	0	0	1	1	1	1	LexA-binding,	inner	membrane-associated	putative	hydrolase
Zn_dep_PLPC	PF00882.18	gi|433593545|ref|YP_007296286.1|	-	0.086	12.8	0.0	0.13	12.3	0.0	1.3	1	0	0	1	1	1	0	Zinc	dependent	phospholipase	C
DUF4184	PF13803.6	gi|433593545|ref|YP_007296286.1|	-	1	9.0	4.0	1.8	8.2	0.1	2.6	2	1	1	3	3	3	0	Domain	of	unknown	function	(DUF4184)
DUF2070	PF09843.9	gi|433593546|ref|YP_007296287.1|	-	0.12	10.6	3.5	0.13	10.5	3.5	1.0	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2070)
DUF2530	PF10745.9	gi|433593546|ref|YP_007296287.1|	-	4.5	7.6	9.8	0.92	9.8	3.0	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2530)
YbgT_YccB	PF08173.11	gi|433593546|ref|YP_007296287.1|	-	7.2	6.8	9.7	1	9.5	1.7	2.6	2	1	0	2	2	2	0	Membrane	bound	YbgT-like	protein
DUF4350	PF14258.6	gi|433593547|ref|YP_007296288.1|	-	6.2e-08	33.0	0.1	6.2e-08	33.0	0.1	2.6	3	1	0	3	3	3	1	Domain	of	unknown	function	(DUF4350)
ThuA	PF06283.11	gi|433593547|ref|YP_007296288.1|	-	0.0018	18.5	0.1	0.0035	17.6	0.1	1.4	1	0	0	1	1	1	1	Trehalose	utilisation
ABC_transp_aux	PF09822.9	gi|433593547|ref|YP_007296288.1|	-	0.17	11.3	0.0	0.28	10.6	0.0	1.3	1	0	0	1	1	1	0	ABC-type	uncharacterized	transport	system
AAA_3	PF07726.11	gi|433593548|ref|YP_007296289.1|	-	1e-60	203.4	0.1	1.6e-60	202.7	0.1	1.3	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_lid_2	PF17863.1	gi|433593548|ref|YP_007296289.1|	-	1.2e-20	73.1	2.6	2.9e-20	71.9	2.6	1.7	1	0	0	1	1	1	1	AAA	lid	domain
AAA_5	PF07728.14	gi|433593548|ref|YP_007296289.1|	-	9.8e-17	61.2	0.0	2e-16	60.2	0.0	1.5	1	0	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
RuvB_N	PF05496.12	gi|433593548|ref|YP_007296289.1|	-	7.2e-05	22.6	0.1	0.00063	19.5	0.0	2.4	2	1	0	2	2	2	1	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
MCM	PF00493.23	gi|433593548|ref|YP_007296289.1|	-	0.00011	21.4	0.0	0.00018	20.7	0.0	1.4	1	0	0	1	1	1	1	MCM	P-loop	domain
AAA	PF00004.29	gi|433593548|ref|YP_007296289.1|	-	0.00028	21.3	0.0	0.00088	19.7	0.0	1.9	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Mg_chelatase	PF01078.21	gi|433593548|ref|YP_007296289.1|	-	0.00047	19.6	0.1	0.44	9.9	0.0	2.2	2	0	0	2	2	2	2	Magnesium	chelatase,	subunit	ChlI
Sigma54_activat	PF00158.26	gi|433593548|ref|YP_007296289.1|	-	0.0012	18.5	0.0	0.012	15.3	0.0	2.1	1	1	0	1	1	1	1	Sigma-54	interaction	domain
AAA_16	PF13191.6	gi|433593548|ref|YP_007296289.1|	-	0.061	13.7	0.2	0.19	12.1	0.1	2.0	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_22	PF13401.6	gi|433593548|ref|YP_007296289.1|	-	0.12	12.7	0.0	0.38	11.0	0.0	1.8	1	0	0	1	1	1	0	AAA	domain
Big_3_5	PF16640.5	gi|433593549|ref|YP_007296290.1|	-	0.0029	17.7	8.7	0.0029	17.7	8.7	3.4	3	0	0	3	3	3	1	Bacterial	Ig-like	domain	(group	3)
DUF4455	PF14643.6	gi|433593549|ref|YP_007296290.1|	-	0.0087	14.8	0.8	0.016	13.9	0.8	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4455)
Cep57_MT_bd	PF06657.13	gi|433593549|ref|YP_007296290.1|	-	0.016	15.7	0.6	0.044	14.2	0.6	1.8	1	0	0	1	1	1	0	Centrosome	microtubule-binding	domain	of	Cep57
CooC_C	PF15976.5	gi|433593549|ref|YP_007296290.1|	-	0.022	14.8	0.0	0.097	12.7	0.0	2.2	1	0	0	1	1	1	0	CS1-pili	formation	C-terminal
DUF2203	PF09969.9	gi|433593549|ref|YP_007296290.1|	-	0.023	15.4	3.6	0.029	15.1	1.6	2.1	1	1	1	2	2	2	0	Uncharacterized	conserved	protein	(DUF2203)
DUF4407	PF14362.6	gi|433593549|ref|YP_007296290.1|	-	0.025	14.0	5.7	0.054	12.8	5.7	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4407)
HOIP-UBA	PF16678.5	gi|433593549|ref|YP_007296290.1|	-	0.07	13.1	0.8	0.15	12.1	0.4	1.7	2	0	0	2	2	2	0	HOIP	UBA	domain	pair
CarbopepD_reg_2	PF13715.6	gi|433593549|ref|YP_007296290.1|	-	0.19	11.7	0.0	0.19	11.7	0.0	3.7	5	0	0	5	5	5	0	CarboxypepD_reg-like	domain
DUF5082	PF16888.5	gi|433593549|ref|YP_007296290.1|	-	0.26	11.6	2.7	0.71	10.2	2.7	1.7	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF5082)
Y1_Tnp	PF01797.16	gi|433593550|ref|YP_007296291.1|	-	2.4e-34	118.1	0.1	2.7e-34	117.9	0.1	1.0	1	0	0	1	1	1	1	Transposase	IS200	like
DUF4965	PF16335.5	gi|433593550|ref|YP_007296291.1|	-	0.088	12.5	0.0	0.098	12.3	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4965)
DUF3638	PF12340.8	gi|433593550|ref|YP_007296291.1|	-	0.17	11.2	0.0	0.23	10.8	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3638)
OrfB_Zn_ribbon	PF07282.11	gi|433593551|ref|YP_007296292.1|	-	2.7e-23	81.7	0.7	5.3e-23	80.7	0.7	1.5	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
DUF1616	PF07760.11	gi|433593552|ref|YP_007296293.1|	-	1.7e-120	401.8	0.5	2.6e-99	332.3	0.0	2.0	1	1	1	2	2	2	2	Protein	of	unknown	function	(DUF1616)
FSA_C	PF10479.9	gi|433593552|ref|YP_007296293.1|	-	2.3	6.3	5.3	3.1	5.8	5.3	1.1	1	0	0	1	1	1	0	Fragile	site-associated	protein	C-terminus
DDE_Tnp_1	PF01609.21	gi|433593554|ref|YP_007296295.1|	-	1.9e-29	102.9	0.2	2.4e-29	102.5	0.2	1.1	1	0	0	1	1	1	1	Transposase	DDE	domain
Corona_3	PF04694.12	gi|433593554|ref|YP_007296295.1|	-	0.0056	17.0	0.0	0.018	15.3	0.0	1.8	1	0	0	1	1	1	1	Coronavirus	ORF3	protein
DDE_Tnp_1_4	PF13701.6	gi|433593554|ref|YP_007296295.1|	-	0.087	11.1	0.0	0.12	10.6	0.0	1.3	1	0	0	1	1	1	0	Transposase	DDE	domain	group	1
Glycos_transf_2	PF00535.26	gi|433593555|ref|YP_007296296.1|	-	1.4e-23	83.6	0.0	1.9e-23	83.1	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|433593555|ref|YP_007296296.1|	-	0.003	17.5	0.0	0.0042	17.0	0.0	1.3	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
NTP_transf_3	PF12804.7	gi|433593555|ref|YP_007296296.1|	-	0.062	13.6	0.0	0.17	12.3	0.0	1.7	1	1	1	2	2	2	0	MobA-like	NTP	transferase	domain
Glyco_transf_21	PF13506.6	gi|433593555|ref|YP_007296296.1|	-	0.076	12.5	0.0	0.29	10.6	0.0	1.9	2	0	0	2	2	2	0	Glycosyl	transferase	family	21
PEP_hydrolase	PF09370.10	gi|433593555|ref|YP_007296296.1|	-	0.1	11.8	0.2	0.18	11.0	0.2	1.3	1	0	0	1	1	1	0	Phosphoenolpyruvate	hydrolase-like
Glyco_tranf_2_4	PF13704.6	gi|433593555|ref|YP_007296296.1|	-	0.15	12.6	0.0	0.36	11.4	0.0	1.7	1	1	0	1	1	1	0	Glycosyl	transferase	family	2
DDE_Tnp_1	PF01609.21	gi|433593556|ref|YP_007296297.1|	-	5.1e-11	42.6	0.0	6.6e-11	42.3	0.0	1.1	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_1_4	PF13701.6	gi|433593556|ref|YP_007296297.1|	-	0.043	12.1	0.1	0.17	10.1	0.1	1.8	1	1	0	1	1	1	0	Transposase	DDE	domain	group	1
Epimerase	PF01370.21	gi|433593558|ref|YP_007296299.1|	-	1e-43	149.6	0.7	1.2e-43	149.3	0.7	1.1	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
GDP_Man_Dehyd	PF16363.5	gi|433593558|ref|YP_007296299.1|	-	7.3e-39	134.1	0.8	6.3e-38	131.0	0.8	2.3	1	1	0	1	1	1	1	GDP-mannose	4,6	dehydratase
RmlD_sub_bind	PF04321.17	gi|433593558|ref|YP_007296299.1|	-	1.3e-12	47.4	0.2	1.6e-12	47.1	0.2	1.2	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
3Beta_HSD	PF01073.19	gi|433593558|ref|YP_007296299.1|	-	6.3e-11	41.8	0.0	1.1e-10	40.9	0.0	1.5	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
Polysacc_synt_2	PF02719.15	gi|433593558|ref|YP_007296299.1|	-	4.9e-10	39.0	0.8	3.8e-08	32.8	0.8	2.4	1	1	0	1	1	1	1	Polysaccharide	biosynthesis	protein
NAD_binding_4	PF07993.12	gi|433593558|ref|YP_007296299.1|	-	1.8e-07	30.6	0.3	4.7e-05	22.7	0.1	2.3	2	1	0	2	2	2	2	Male	sterility	protein
NAD_binding_10	PF13460.6	gi|433593558|ref|YP_007296299.1|	-	0.0069	16.3	0.0	0.013	15.4	0.0	1.4	1	0	0	1	1	1	1	NAD(P)H-binding
KR	PF08659.10	gi|433593558|ref|YP_007296299.1|	-	0.01	15.7	0.1	0.74	9.7	0.0	2.3	2	0	0	2	2	2	0	KR	domain
adh_short	PF00106.25	gi|433593558|ref|YP_007296299.1|	-	0.089	12.2	0.3	0.52	9.7	0.0	2.3	1	1	1	2	2	2	0	short	chain	dehydrogenase
Prok-RING_1	PF14446.6	gi|433593559|ref|YP_007296300.1|	-	0.13	12.2	2.8	0.26	11.2	2.8	1.5	1	1	0	1	1	1	0	Prokaryotic	RING	finger	family	1
DDE_Tnp_1	PF01609.21	gi|433593560|ref|YP_007296301.1|	-	1.5e-18	67.2	0.0	2.1e-18	66.7	0.0	1.2	1	0	0	1	1	1	1	Transposase	DDE	domain
DUF772	PF05598.11	gi|433593560|ref|YP_007296301.1|	-	0.0012	18.8	0.0	0.0026	17.7	0.0	1.5	1	0	0	1	1	1	1	Transposase	domain	(DUF772)
Epimerase	PF01370.21	gi|433593561|ref|YP_007296302.1|	-	4.9e-51	173.5	0.0	5.9e-51	173.3	0.0	1.1	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
GDP_Man_Dehyd	PF16363.5	gi|433593561|ref|YP_007296302.1|	-	2.4e-43	148.8	0.0	6.3e-43	147.4	0.0	1.6	1	1	0	1	1	1	1	GDP-mannose	4,6	dehydratase
Polysacc_synt_2	PF02719.15	gi|433593561|ref|YP_007296302.1|	-	4.8e-17	62.0	0.0	5.5e-16	58.5	0.0	2.4	1	1	0	1	1	1	1	Polysaccharide	biosynthesis	protein
RmlD_sub_bind	PF04321.17	gi|433593561|ref|YP_007296302.1|	-	5.2e-17	61.9	0.0	6.8e-17	61.5	0.0	1.1	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
3Beta_HSD	PF01073.19	gi|433593561|ref|YP_007296302.1|	-	3.3e-13	49.3	0.0	4.4e-13	48.9	0.0	1.2	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
NAD_binding_4	PF07993.12	gi|433593561|ref|YP_007296302.1|	-	1.5e-11	43.9	0.0	1.6e-06	27.5	0.0	2.8	2	1	0	2	2	2	2	Male	sterility	protein
NAD_binding_10	PF13460.6	gi|433593561|ref|YP_007296302.1|	-	2.5e-10	40.6	0.0	3.6e-10	40.0	0.0	1.2	1	0	0	1	1	1	1	NAD(P)H-binding
NmrA	PF05368.13	gi|433593561|ref|YP_007296302.1|	-	4.5e-06	26.4	0.0	0.0018	17.9	0.0	2.1	2	0	0	2	2	2	2	NmrA-like	family
TrkA_N	PF02254.18	gi|433593561|ref|YP_007296302.1|	-	3.7e-05	23.9	0.1	7.8e-05	22.9	0.1	1.5	1	0	0	1	1	1	1	TrkA-N	domain
adh_short	PF00106.25	gi|433593561|ref|YP_007296302.1|	-	8.6e-05	22.1	0.0	0.016	14.7	0.0	2.3	2	0	0	2	2	2	2	short	chain	dehydrogenase
NUDIX	PF00293.28	gi|433593562|ref|YP_007296303.1|	-	3.7e-12	46.4	0.8	3.9e-12	46.4	0.2	1.3	2	0	0	2	2	2	1	NUDIX	domain
Augurin	PF15187.6	gi|433593562|ref|YP_007296303.1|	-	0.12	12.6	0.0	0.15	12.2	0.0	1.2	1	0	0	1	1	1	0	Oesophageal	cancer-related	gene	4
NTP_transferase	PF00483.23	gi|433593563|ref|YP_007296304.1|	-	2.6e-37	128.7	0.0	3.4e-37	128.4	0.0	1.1	1	0	0	1	1	1	1	Nucleotidyl	transferase
NTP_transf_3	PF12804.7	gi|433593563|ref|YP_007296304.1|	-	7.4e-10	39.4	0.0	1e-09	39.0	0.0	1.2	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
Hexapep	PF00132.24	gi|433593563|ref|YP_007296304.1|	-	0.0073	16.0	0.3	0.086	12.6	0.0	2.7	2	1	0	2	2	2	1	Bacterial	transferase	hexapeptide	(six	repeats)
Pentapeptide_3	PF13576.6	gi|433593563|ref|YP_007296304.1|	-	0.014	15.6	0.2	0.36	11.0	0.0	2.9	3	0	0	3	3	3	0	Pentapeptide	repeats	(9	copies)
NUDIX	PF00293.28	gi|433593564|ref|YP_007296305.1|	-	3.8e-11	43.2	0.1	4.6e-11	42.9	0.1	1.1	1	0	0	1	1	1	1	NUDIX	domain
GDP_Man_Dehyd	PF16363.5	gi|433593565|ref|YP_007296306.1|	-	9.5e-81	271.8	0.0	1.1e-80	271.6	0.0	1.0	1	0	0	1	1	1	1	GDP-mannose	4,6	dehydratase
Epimerase	PF01370.21	gi|433593565|ref|YP_007296306.1|	-	2.5e-66	223.6	0.0	3.1e-66	223.3	0.0	1.1	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
3Beta_HSD	PF01073.19	gi|433593565|ref|YP_007296306.1|	-	1.3e-24	86.7	0.0	1.8e-24	86.3	0.0	1.1	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
Polysacc_synt_2	PF02719.15	gi|433593565|ref|YP_007296306.1|	-	1.2e-20	73.9	0.0	2e-19	69.8	0.0	2.0	1	1	0	1	1	1	1	Polysaccharide	biosynthesis	protein
RmlD_sub_bind	PF04321.17	gi|433593565|ref|YP_007296306.1|	-	7.6e-20	71.2	0.0	9.9e-20	70.8	0.0	1.1	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
NAD_binding_4	PF07993.12	gi|433593565|ref|YP_007296306.1|	-	9e-16	57.8	0.0	1.4e-14	53.9	0.0	2.3	1	1	0	1	1	1	1	Male	sterility	protein
NAD_binding_10	PF13460.6	gi|433593565|ref|YP_007296306.1|	-	5.3e-12	46.0	0.0	8.3e-12	45.4	0.0	1.3	1	0	0	1	1	1	1	NAD(P)H-binding
NmrA	PF05368.13	gi|433593565|ref|YP_007296306.1|	-	3.5e-05	23.5	0.1	5.8e-05	22.8	0.1	1.3	1	0	0	1	1	1	1	NmrA-like	family
adh_short	PF00106.25	gi|433593565|ref|YP_007296306.1|	-	0.00058	19.4	0.0	0.0075	15.8	0.0	2.5	2	1	0	2	2	2	1	short	chain	dehydrogenase
Sacchrp_dh_NADP	PF03435.18	gi|433593565|ref|YP_007296306.1|	-	0.0045	17.2	0.1	0.01	16.1	0.1	1.7	2	0	0	2	2	2	1	Saccharopine	dehydrogenase	NADP	binding	domain
KR	PF08659.10	gi|433593565|ref|YP_007296306.1|	-	0.06	13.3	0.0	0.22	11.4	0.0	1.9	1	1	0	1	1	1	0	KR	domain
Ldh_1_N	PF00056.23	gi|433593565|ref|YP_007296306.1|	-	0.16	12.1	0.0	0.26	11.4	0.0	1.4	1	0	0	1	1	1	0	lactate/malate	dehydrogenase,	NAD	binding	domain
DDE_Tnp_IS1595	PF12762.7	gi|433593566|ref|YP_007296307.1|	-	3.6e-21	75.8	0.0	5.6e-21	75.1	0.0	1.3	1	0	0	1	1	1	1	ISXO2-like	transposase	domain
Zn_Tnp_IS1595	PF12760.7	gi|433593566|ref|YP_007296307.1|	-	1.1e-08	34.9	3.6	2.2e-08	33.9	3.6	1.5	1	0	0	1	1	1	1	Transposase	zinc-ribbon	domain
Zn_Tnp_IS1	PF03811.13	gi|433593566|ref|YP_007296307.1|	-	0.0003	20.5	4.5	0.0003	20.5	4.5	1.9	2	0	0	2	2	2	1	InsA	N-terminal	domain
DUF2089	PF09862.9	gi|433593566|ref|YP_007296307.1|	-	0.0022	18.0	0.1	0.004	17.2	0.1	1.5	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF2089)
CoiA	PF06054.11	gi|433593566|ref|YP_007296307.1|	-	0.048	12.8	0.1	0.075	12.2	0.1	1.4	1	0	0	1	1	1	0	Competence	protein	CoiA-like	family
Lar_restr_allev	PF14354.6	gi|433593566|ref|YP_007296307.1|	-	0.077	13.4	0.7	0.16	12.3	0.7	1.5	1	0	0	1	1	1	0	Restriction	alleviation	protein	Lar
RHH_6	PF16762.5	gi|433593567|ref|YP_007296308.1|	-	0.00029	21.4	1.8	0.064	13.9	1.8	2.4	1	1	0	1	1	1	1	Ribbon-helix-helix	domain
RHH_8	PF17723.1	gi|433593567|ref|YP_007296308.1|	-	0.0012	19.1	0.1	0.0018	18.4	0.1	1.5	1	1	0	1	1	1	1	Ribbon-Helix-Helix	transcriptional	regulator	family
NYD-SP28	PF14772.6	gi|433593567|ref|YP_007296308.1|	-	0.057	13.5	4.1	0.069	13.2	3.2	1.6	1	1	1	2	2	2	0	Sperm	tail
HhH-GPD	PF00730.25	gi|433593567|ref|YP_007296308.1|	-	0.13	12.7	0.0	0.19	12.2	0.0	1.4	1	1	0	1	1	1	0	HhH-GPD	superfamily	base	excision	DNA	repair	protein
FUSC	PF04632.12	gi|433593567|ref|YP_007296308.1|	-	2.3	6.6	4.6	2.7	6.4	4.6	1.0	1	0	0	1	1	1	0	Fusaric	acid	resistance	protein	family
MarR_2	PF12802.7	gi|433593568|ref|YP_007296309.1|	-	1.1e-05	25.2	0.0	1.8e-05	24.6	0.0	1.3	1	0	0	1	1	1	1	MarR	family
Rrf2	PF02082.20	gi|433593568|ref|YP_007296309.1|	-	0.00044	20.5	0.0	0.00077	19.8	0.0	1.3	1	0	0	1	1	1	1	Transcriptional	regulator
HTH_Crp_2	PF13545.6	gi|433593568|ref|YP_007296309.1|	-	0.0018	18.2	0.0	0.0028	17.6	0.0	1.4	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
TrmB	PF01978.19	gi|433593568|ref|YP_007296309.1|	-	0.002	18.0	0.0	0.0035	17.2	0.0	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
TFIIE_alpha	PF02002.17	gi|433593568|ref|YP_007296309.1|	-	0.01	15.7	0.1	0.017	15.0	0.1	1.4	1	1	0	1	1	1	0	TFIIE	alpha	subunit
HTH_24	PF13412.6	gi|433593568|ref|YP_007296309.1|	-	0.015	14.8	0.1	0.029	13.9	0.1	1.6	1	1	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HTH_36	PF13730.6	gi|433593568|ref|YP_007296309.1|	-	0.021	14.8	0.0	0.048	13.6	0.0	1.6	2	0	0	2	2	2	0	Helix-turn-helix	domain
HTH_IclR	PF09339.10	gi|433593568|ref|YP_007296309.1|	-	0.022	14.6	0.0	0.036	13.9	0.0	1.3	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
HTH_29	PF13551.6	gi|433593568|ref|YP_007296309.1|	-	0.022	14.7	0.1	0.046	13.8	0.0	1.5	1	1	0	1	1	1	0	Winged	helix-turn	helix
HTH_11	PF08279.12	gi|433593568|ref|YP_007296309.1|	-	0.027	14.4	0.0	0.045	13.7	0.0	1.3	1	0	0	1	1	1	0	HTH	domain
HTH_27	PF13463.6	gi|433593568|ref|YP_007296309.1|	-	0.028	14.9	0.1	0.046	14.2	0.0	1.5	1	1	0	1	1	1	0	Winged	helix	DNA-binding	domain
Fe_dep_repress	PF01325.19	gi|433593568|ref|YP_007296309.1|	-	0.031	14.5	0.0	0.057	13.6	0.0	1.4	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
PaaX	PF07848.12	gi|433593568|ref|YP_007296309.1|	-	0.04	14.1	0.3	0.1	12.8	0.3	1.7	1	1	0	1	1	1	0	PaaX-like	protein
MarR	PF01047.22	gi|433593568|ref|YP_007296309.1|	-	0.052	13.5	0.0	0.093	12.7	0.0	1.4	1	0	0	1	1	1	0	MarR	family
DprA_WH	PF17782.1	gi|433593568|ref|YP_007296309.1|	-	0.08	13.1	0.0	0.12	12.5	0.0	1.4	1	0	0	1	1	1	0	DprA	winged	helix	domain
Glyco_tranf_2_4	PF13704.6	gi|433593568|ref|YP_007296309.1|	-	0.5	10.9	7.0	1.3	9.5	1.7	2.9	1	1	0	2	2	2	0	Glycosyl	transferase	family	2
UPF0175	PF03683.13	gi|433593569|ref|YP_007296310.1|	-	2.4e-09	36.8	0.4	2.4e-09	36.8	0.4	1.7	1	1	0	1	1	1	1	Uncharacterised	protein	family	(UPF0175)
GYF_2	PF14237.6	gi|433593569|ref|YP_007296310.1|	-	0.14	12.0	0.6	0.64	9.9	0.1	2.2	1	1	1	2	2	2	0	GYF	domain	2
RHH_1	PF01402.21	gi|433593569|ref|YP_007296310.1|	-	0.6	10.1	6.5	0.15	12.0	0.9	2.6	3	1	0	3	3	3	0	Ribbon-helix-helix	protein,	copG	family
OrfB_Zn_ribbon	PF07282.11	gi|433593570|ref|YP_007296311.1|	-	4.9e-23	80.8	0.3	9.5e-23	79.9	0.3	1.5	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
OrfB_IS605	PF01385.19	gi|433593570|ref|YP_007296311.1|	-	7.1e-06	26.2	0.3	1.7e-05	25.0	0.0	1.7	2	0	0	2	2	2	1	Probable	transposase
HTH_20	PF12840.7	gi|433593571|ref|YP_007296312.1|	-	1.1e-12	47.9	0.1	1.6e-12	47.3	0.1	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR_2	PF12802.7	gi|433593571|ref|YP_007296312.1|	-	4.1e-06	26.6	0.1	7.6e-06	25.7	0.1	1.5	1	0	0	1	1	1	1	MarR	family
HTH_27	PF13463.6	gi|433593571|ref|YP_007296312.1|	-	3.3e-05	24.3	0.0	5.3e-05	23.6	0.0	1.3	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
TrmB	PF01978.19	gi|433593571|ref|YP_007296312.1|	-	0.00015	21.6	0.0	0.00025	20.9	0.0	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
TFIIE_alpha	PF02002.17	gi|433593571|ref|YP_007296312.1|	-	0.00016	21.4	0.0	0.0002	21.2	0.0	1.1	1	0	0	1	1	1	1	TFIIE	alpha	subunit
HTH_34	PF13601.6	gi|433593571|ref|YP_007296312.1|	-	0.00017	21.7	0.0	0.00025	21.2	0.0	1.2	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
MarR	PF01047.22	gi|433593571|ref|YP_007296312.1|	-	0.00054	19.8	0.0	0.00099	19.0	0.0	1.4	1	0	0	1	1	1	1	MarR	family
HTH_5	PF01022.20	gi|433593571|ref|YP_007296312.1|	-	0.0042	16.9	0.0	0.007	16.2	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
B-block_TFIIIC	PF04182.12	gi|433593571|ref|YP_007296312.1|	-	0.012	15.8	0.0	0.018	15.2	0.0	1.3	1	0	0	1	1	1	0	B-block	binding	subunit	of	TFIIIC
HTH_24	PF13412.6	gi|433593571|ref|YP_007296312.1|	-	0.016	14.8	0.0	0.025	14.1	0.0	1.3	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HTH_micro	PF17007.5	gi|433593571|ref|YP_007296312.1|	-	0.044	12.6	0.0	0.044	12.6	0.0	1.0	1	0	0	1	1	1	0	HTH-like
DUF2513	PF10711.9	gi|433593571|ref|YP_007296312.1|	-	0.17	12.2	0.0	0.22	11.9	0.0	1.2	1	0	0	1	1	1	0	Hypothetical	protein	(DUF2513)
HEAT_2	PF13646.6	gi|433593573|ref|YP_007296314.1|	-	0.00039	20.7	3.2	0.002	18.4	2.0	2.4	2	1	0	2	2	2	1	HEAT	repeats
HEAT	PF02985.22	gi|433593573|ref|YP_007296314.1|	-	0.0023	18.1	0.5	0.01	16.0	0.1	2.4	3	0	0	3	3	3	1	HEAT	repeat
HCMV_UL139	PF12507.8	gi|433593573|ref|YP_007296314.1|	-	0.016	15.6	0.3	0.03	14.7	0.3	1.4	1	0	0	1	1	1	0	Human	Cytomegalovirus	UL139	protein
Cnd1	PF12717.7	gi|433593573|ref|YP_007296314.1|	-	0.019	15.0	0.1	0.03	14.4	0.1	1.3	1	0	0	1	1	1	0	non-SMC	mitotic	condensation	complex	subunit	1
HEAT_EZ	PF13513.6	gi|433593573|ref|YP_007296314.1|	-	0.11	13.1	0.3	4.7	7.8	0.2	2.9	2	1	1	3	3	3	0	HEAT-like	repeat
FlgN	PF05130.12	gi|433593573|ref|YP_007296314.1|	-	0.15	12.6	3.9	0.44	11.0	2.1	2.2	2	1	0	2	2	2	0	FlgN	protein
CBM_X2	PF03442.14	gi|433593574|ref|YP_007296315.1|	-	0.015	15.4	0.0	0.019	15.1	0.0	1.1	1	0	0	1	1	1	0	Carbohydrate	binding	domain	X2
SWIM	PF04434.17	gi|433593576|ref|YP_007296317.1|	-	1.4e-08	34.2	0.4	2.7e-08	33.3	0.4	1.4	1	0	0	1	1	1	1	SWIM	zinc	finger
Cut8	PF08559.10	gi|433593576|ref|YP_007296317.1|	-	0.034	13.7	0.0	0.068	12.8	0.0	1.4	1	0	0	1	1	1	0	Cut8,	nuclear	proteasome	tether	protein
TPR_12	PF13424.6	gi|433593576|ref|YP_007296317.1|	-	8.6	6.7	16.2	25	5.2	0.6	5.1	5	0	0	5	5	5	0	Tetratricopeptide	repeat
PRiA4_ORF3	PF07929.11	gi|433593577|ref|YP_007296318.1|	-	0.00076	19.2	0.2	0.0013	18.5	0.0	1.5	2	0	0	2	2	2	1	Plasmid	pRiA4b	ORF-3-like	protein
MarR_2	PF12802.7	gi|433593578|ref|YP_007296319.1|	-	1e-06	28.5	0.0	1.6e-06	27.9	0.0	1.2	1	0	0	1	1	1	1	MarR	family
HTH_Crp_2	PF13545.6	gi|433593578|ref|YP_007296319.1|	-	2.2e-05	24.3	0.0	2.4e-05	24.2	0.0	1.2	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
HTH_11	PF08279.12	gi|433593578|ref|YP_007296319.1|	-	0.00013	21.8	0.0	0.00022	21.1	0.0	1.4	1	0	0	1	1	1	1	HTH	domain
HTH_24	PF13412.6	gi|433593578|ref|YP_007296319.1|	-	0.00082	18.9	0.0	0.0013	18.2	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
TrmB	PF01978.19	gi|433593578|ref|YP_007296319.1|	-	0.00085	19.2	0.0	0.0012	18.7	0.0	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_20	PF12840.7	gi|433593578|ref|YP_007296319.1|	-	0.0022	18.0	0.0	0.0032	17.5	0.0	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_36	PF13730.6	gi|433593578|ref|YP_007296319.1|	-	0.003	17.5	0.0	0.0035	17.3	0.0	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_3	PF01381.22	gi|433593578|ref|YP_007296319.1|	-	0.004	17.2	0.0	0.0075	16.3	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix
LacI	PF00356.21	gi|433593578|ref|YP_007296319.1|	-	0.0073	16.1	0.0	0.014	15.2	0.0	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	lacI	family
HTH_45	PF14947.6	gi|433593578|ref|YP_007296319.1|	-	0.0077	16.2	0.0	0.01	15.8	0.0	1.2	1	0	0	1	1	1	1	Winged	helix-turn-helix
MarR	PF01047.22	gi|433593578|ref|YP_007296319.1|	-	0.016	15.2	0.0	0.023	14.6	0.0	1.2	1	0	0	1	1	1	0	MarR	family
GntR	PF00392.21	gi|433593578|ref|YP_007296319.1|	-	0.022	14.4	0.0	0.034	13.8	0.0	1.2	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
DUF4423	PF14394.6	gi|433593578|ref|YP_007296319.1|	-	0.031	14.0	0.0	0.034	13.9	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4423)
HTH_IclR	PF09339.10	gi|433593578|ref|YP_007296319.1|	-	0.033	14.0	0.0	0.046	13.5	0.0	1.3	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
DUF1323	PF07037.11	gi|433593578|ref|YP_007296319.1|	-	0.037	14.4	0.0	0.084	13.3	0.0	1.6	1	1	1	2	2	2	0	Putative	transcription	regulator	(DUF1323)
HTH_27	PF13463.6	gi|433593578|ref|YP_007296319.1|	-	0.065	13.7	0.0	0.1	13.1	0.0	1.3	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
YdaS_antitoxin	PF15943.5	gi|433593578|ref|YP_007296319.1|	-	0.07	13.0	0.0	0.1	12.5	0.0	1.3	1	0	0	1	1	1	0	Putative	antitoxin	of	bacterial	toxin-antitoxin	system,	YdaS/YdaT
HTH_23	PF13384.6	gi|433593578|ref|YP_007296319.1|	-	0.086	12.7	0.0	0.15	11.9	0.0	1.4	1	0	0	1	1	1	0	Homeodomain-like	domain
Phage_CI_repr	PF07022.13	gi|433593578|ref|YP_007296319.1|	-	0.11	12.6	0.0	0.15	12.2	0.0	1.3	1	0	0	1	1	1	0	Bacteriophage	CI	repressor	helix-turn-helix	domain
HTH_29	PF13551.6	gi|433593578|ref|YP_007296319.1|	-	0.12	12.4	0.0	0.17	12.0	0.0	1.3	1	0	0	1	1	1	0	Winged	helix-turn	helix
HTH_5	PF01022.20	gi|433593578|ref|YP_007296319.1|	-	0.17	11.8	0.0	0.27	11.1	0.0	1.3	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
GST_C_6	PF17171.4	gi|433593579|ref|YP_007296320.1|	-	0.0025	17.6	0.0	0.0038	17.0	0.0	1.3	1	0	0	1	1	1	1	Glutathione	S-transferase,	C-terminal	domain
DUF2080	PF09853.9	gi|433593580|ref|YP_007296321.1|	-	6.8e-05	22.5	0.0	8e-05	22.3	0.0	1.1	1	0	0	1	1	1	1	Putative	transposon-encoded	protein	(DUF2080)
OrfB_Zn_ribbon	PF07282.11	gi|433593581|ref|YP_007296322.1|	-	2.4e-18	65.8	0.1	6.1e-18	64.5	0.1	1.7	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
zf-Di19	PF05605.12	gi|433593581|ref|YP_007296322.1|	-	0.0051	17.1	5.0	0.0051	17.1	5.0	2.0	2	0	0	2	2	2	1	Drought	induced	19	protein	(Di19),	zinc-binding
OrfB_IS605	PF01385.19	gi|433593581|ref|YP_007296322.1|	-	0.0068	16.6	1.0	0.0068	16.6	1.0	2.4	2	1	0	2	2	2	1	Probable	transposase
zf-NADH-PPase	PF09297.11	gi|433593581|ref|YP_007296322.1|	-	0.085	12.5	0.4	0.085	12.5	0.4	2.9	3	0	0	3	3	3	0	NADH	pyrophosphatase	zinc	ribbon	domain
Lar_restr_allev	PF14354.6	gi|433593581|ref|YP_007296322.1|	-	0.093	13.1	1.9	0.32	11.4	1.9	1.9	1	0	0	1	1	1	0	Restriction	alleviation	protein	Lar
EzrA	PF06160.12	gi|433593581|ref|YP_007296322.1|	-	0.17	10.0	0.4	0.28	9.3	0.4	1.2	1	0	0	1	1	1	0	Septation	ring	formation	regulator,	EzrA
zf_CopZ	PF18423.1	gi|433593581|ref|YP_007296322.1|	-	0.31	11.0	3.7	0.36	10.8	0.7	2.4	2	0	0	2	2	2	0	Zinc	binding	domain
DZR	PF12773.7	gi|433593581|ref|YP_007296322.1|	-	0.87	9.7	5.4	0.31	11.1	2.3	1.8	2	0	0	2	2	2	0	Double	zinc	ribbon
Zn_Tnp_IS1595	PF12760.7	gi|433593581|ref|YP_007296322.1|	-	1.2	9.2	9.7	11	6.1	8.3	2.5	1	1	1	2	2	2	0	Transposase	zinc-ribbon	domain
DDE_Tnp_1	PF01609.21	gi|433593582|ref|YP_007296323.1|	-	2.9e-22	79.4	0.0	7.6e-22	78.0	0.0	1.7	1	1	0	1	1	1	1	Transposase	DDE	domain
DUF772	PF05598.11	gi|433593582|ref|YP_007296323.1|	-	7.8e-07	29.0	0.0	2.1e-06	27.7	0.0	1.7	1	0	0	1	1	1	1	Transposase	domain	(DUF772)
DDE_Tnp_4	PF13359.6	gi|433593582|ref|YP_007296323.1|	-	0.00014	21.6	0.0	0.57	9.8	0.0	2.3	2	0	0	2	2	2	2	DDE	superfamily	endonuclease
DDE_Tnp_1_3	PF13612.6	gi|433593582|ref|YP_007296323.1|	-	0.0012	18.9	0.0	0.0044	17.0	0.0	1.9	2	0	0	2	2	2	1	Transposase	DDE	domain
DDE_Tnp_1_6	PF13751.6	gi|433593582|ref|YP_007296323.1|	-	0.0024	18.1	0.2	0.0048	17.1	0.2	1.4	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_1	PF01609.21	gi|433593583|ref|YP_007296324.1|	-	3.2e-10	40.0	3.3	4.9e-10	39.4	3.3	1.2	1	0	0	1	1	1	1	Transposase	DDE	domain
DUF772	PF05598.11	gi|433593583|ref|YP_007296324.1|	-	0.17	11.9	0.5	0.48	10.5	0.3	1.9	2	0	0	2	2	2	0	Transposase	domain	(DUF772)
#
# Program:         hmmscan
# Version:         3.2.1 (June 2018)
# Pipeline mode:   SCAN
# Query file:      /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Natrinema_pellirubrum_DSM_15624_uid74437/NC_019967.faa
# Target file:     /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm
# Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Natrinema_pellirubrum_DSM_15624_uid74437/NC_019967.PFam32-A --tblout /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Natrinema_pellirubrum_DSM_15624_uid74437/NC_019967.PFam32-A.tblout --cpu 20 /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Natrinema_pellirubrum_DSM_15624_uid74437/NC_019967.faa 
# Current dir:     /oak/stanford/groups/akundaje/marinovg/genomes
# Date:            Mon Mar 25 15:55:18 2019
# [ok]