#                                                                           --- full sequence ---- --- best 1 domain ---- --- domain number estimation ----
# target name        accession  query name                       accession    E-value  score  bias   E-value  score  bias   exp reg clu  ov env dom rep inc description of target
#------------------- ----------             -------------------- ---------- --------- ------ ----- --------- ------ -----   --- --- --- --- --- --- --- --- ---------------------
Cdc6_C	PF09079.6	gi|433593058|ref|YP_007282544.1|	-	1.4e-15	56.7	0.0	4.2e-15	55.2	0.0	1.8	2	0	0	2	2	2	1	CDC6,	C	terminal
AAA_16	PF13191.1	gi|433593058|ref|YP_007282544.1|	-	4e-11	43.2	0.0	1.3e-10	41.5	0.0	1.8	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA_22	PF13401.1	gi|433593058|ref|YP_007282544.1|	-	2.3e-10	40.7	0.0	7.7e-10	39.0	0.0	1.8	2	0	0	2	2	2	1	AAA	domain
AAA	PF00004.24	gi|433593058|ref|YP_007282544.1|	-	1.5e-05	25.2	0.0	5.3e-05	23.4	0.0	2.0	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
DUF815	PF05673.8	gi|433593058|ref|YP_007282544.1|	-	0.0024	16.8	0.0	0.0038	16.1	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF815)
AAA_5	PF07728.9	gi|433593058|ref|YP_007282544.1|	-	0.0043	16.7	0.0	0.35	10.6	0.0	2.5	2	0	0	2	2	2	1	AAA	domain	(dynein-related	subfamily)
Sigma54_activat	PF00158.21	gi|433593058|ref|YP_007282544.1|	-	0.0055	16.1	0.0	0.012	15.1	0.0	1.5	1	0	0	1	1	1	1	Sigma-54	interaction	domain
ResIII	PF04851.10	gi|433593058|ref|YP_007282544.1|	-	0.027	14.3	0.0	0.096	12.5	0.0	1.8	2	0	0	2	2	2	0	Type	III	restriction	enzyme,	res	subunit
AAA_17	PF13207.1	gi|433593058|ref|YP_007282544.1|	-	0.032	15.0	0.1	0.16	12.8	0.0	2.4	1	1	0	1	1	1	0	AAA	domain
Terminase_2	PF03592.11	gi|433593058|ref|YP_007282544.1|	-	0.044	14.0	0.0	0.13	12.5	0.0	1.8	1	1	0	1	1	1	0	Terminase	small	subunit
RNA_helicase	PF00910.17	gi|433593058|ref|YP_007282544.1|	-	0.11	12.6	0.0	0.46	10.6	0.0	2.1	1	0	0	1	1	1	0	RNA	helicase
CSTF2_hinge	PF14327.1	gi|433593060|ref|YP_007282546.1|	-	0.081	13.0	0.0	0.12	12.4	0.0	1.3	1	0	0	1	1	1	0	Hinge	domain	of	cleavage	stimulation	factor	subunit	2
DUF2274	PF10038.4	gi|433593060|ref|YP_007282546.1|	-	0.13	12.4	1.5	6.2	7.0	0.1	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2274)
MarR_2	PF12802.2	gi|433593061|ref|YP_007282547.1|	-	5.3e-15	54.8	1.6	5.9e-08	32.2	0.5	2.7	2	0	0	2	2	2	2	MarR	family
TrmB	PF01978.14	gi|433593061|ref|YP_007282547.1|	-	6.4e-09	35.4	0.1	0.00097	18.7	0.0	2.6	2	0	0	2	2	2	2	Sugar-specific	transcriptional	regulator	TrmB
Rrf2	PF02082.15	gi|433593061|ref|YP_007282547.1|	-	1.1e-08	35.0	0.0	0.0013	18.7	0.0	2.4	2	0	0	2	2	2	2	Transcriptional	regulator
MarR	PF01047.17	gi|433593061|ref|YP_007282547.1|	-	4.9e-08	32.5	0.0	0.0043	16.7	0.0	2.5	2	0	0	2	2	2	2	MarR	family
HTH_27	PF13463.1	gi|433593061|ref|YP_007282547.1|	-	2.7e-07	30.7	0.5	6.6e-05	23.1	0.2	2.6	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
HTH_29	PF13551.1	gi|433593061|ref|YP_007282547.1|	-	3.1e-06	27.2	0.4	0.023	14.8	0.0	2.4	1	1	1	2	2	2	2	Winged	helix-turn	helix
HTH_24	PF13412.1	gi|433593061|ref|YP_007282547.1|	-	3.7e-06	26.2	0.1	0.022	14.1	0.0	2.4	2	0	0	2	2	2	2	Winged	helix-turn-helix	DNA-binding
HTH_IclR	PF09339.5	gi|433593061|ref|YP_007282547.1|	-	8.8e-06	25.2	0.1	0.099	12.2	0.0	2.8	2	0	0	2	2	2	2	IclR	helix-turn-helix	domain
HTH_23	PF13384.1	gi|433593061|ref|YP_007282547.1|	-	1.2e-05	24.7	0.1	0.0066	16.0	0.0	2.8	2	0	0	2	2	2	1	Homeodomain-like	domain
HTH_20	PF12840.2	gi|433593061|ref|YP_007282547.1|	-	0.0001	22.0	0.2	0.31	10.8	0.0	2.6	2	0	0	2	2	2	2	Helix-turn-helix	domain
HTH_28	PF13518.1	gi|433593061|ref|YP_007282547.1|	-	0.00052	19.9	0.1	0.26	11.3	0.0	2.7	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_38	PF13936.1	gi|433593061|ref|YP_007282547.1|	-	0.0011	18.4	0.2	0.36	10.4	0.0	2.9	3	0	0	3	3	3	1	Helix-turn-helix	domain
GntR	PF00392.16	gi|433593061|ref|YP_007282547.1|	-	0.002	17.5	0.0	2.2	7.7	0.0	2.6	2	0	0	2	2	2	2	Bacterial	regulatory	proteins,	gntR	family
Crp	PF00325.15	gi|433593061|ref|YP_007282547.1|	-	0.0026	17.1	0.7	0.0093	15.4	0.3	2.0	2	0	0	2	2	2	1	Bacterial	regulatory	proteins,	crp	family
HTH_Crp_2	PF13545.1	gi|433593061|ref|YP_007282547.1|	-	0.0029	17.3	0.0	0.27	11.0	0.0	2.6	2	1	0	2	2	2	1	Crp-like	helix-turn-helix	domain
Penicillinase_R	PF03965.11	gi|433593061|ref|YP_007282547.1|	-	0.0031	17.5	0.0	3.3	7.8	0.0	2.4	2	0	0	2	2	2	2	Penicillinase	repressor
DUF746	PF05344.6	gi|433593061|ref|YP_007282547.1|	-	0.0089	15.5	0.0	0.02	14.4	0.0	1.6	1	0	0	1	1	1	1	Domain	of	Unknown	Function	(DUF746)
HTH_41	PF14502.1	gi|433593061|ref|YP_007282547.1|	-	0.015	14.9	0.0	0.13	11.9	0.0	2.3	2	0	0	2	2	2	0	Helix-turn-helix	domain
GPP34	PF05719.6	gi|433593061|ref|YP_007282547.1|	-	0.017	15.2	1.1	0.031	14.3	0.7	1.7	1	1	1	2	2	2	0	Golgi	phosphoprotein	3	(GPP34)
LZ_Tnp_IS481	PF13011.1	gi|433593061|ref|YP_007282547.1|	-	0.03	14.6	0.0	0.068	13.5	0.0	1.6	1	0	0	1	1	1	0	leucine-zipper	of	insertion	element	IS481
HTH_5	PF01022.15	gi|433593061|ref|YP_007282547.1|	-	0.032	13.9	0.0	6.1	6.5	0.0	2.5	2	0	0	2	2	2	0	Bacterial	regulatory	protein,	arsR	family
HTH_36	PF13730.1	gi|433593061|ref|YP_007282547.1|	-	0.037	14.1	0.0	0.87	9.7	0.0	2.4	2	0	0	2	2	2	0	Helix-turn-helix	domain
RPA_C	PF08784.6	gi|433593061|ref|YP_007282547.1|	-	0.1	13.0	0.0	0.23	11.9	0.0	1.6	1	0	0	1	1	1	0	Replication	protein	A	C	terminal
Phage_rep_org_N	PF09681.5	gi|433593061|ref|YP_007282547.1|	-	0.16	11.5	0.0	3.8	7.1	0.0	2.2	2	0	0	2	2	2	0	N-terminal	phage	replisome	organiser	(Phage_rep_org_N)
DUF2204	PF09970.4	gi|433593062|ref|YP_007282548.1|	-	0.001	18.6	0.1	0.18	11.2	0.0	2.3	2	0	0	2	2	2	2	Nucleotidyl	transferase	of	unknown	function	(DUF2204)
HTH_20	PF12840.2	gi|433593062|ref|YP_007282548.1|	-	0.0041	16.8	0.1	0.011	15.4	0.0	1.7	1	0	0	1	1	1	1	Helix-turn-helix	domain
PqqD	PF05402.7	gi|433593062|ref|YP_007282548.1|	-	0.14	12.2	1.5	1.6	8.8	0.0	2.8	2	1	1	3	3	3	0	Coenzyme	PQQ	synthesis	protein	D	(PqqD)
SWIM	PF04434.12	gi|433593063|ref|YP_007282549.1|	-	0.011	15.1	0.6	0.03	13.7	0.4	1.7	1	1	0	1	1	1	0	SWIM	zinc	finger
DUF955	PF06114.8	gi|433593064|ref|YP_007282550.1|	-	0.001	18.7	0.0	0.0018	18.0	0.0	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF955)
SprT-like	PF10263.4	gi|433593064|ref|YP_007282550.1|	-	0.0089	15.7	2.2	0.017	14.7	0.0	2.1	2	1	0	2	2	2	1	SprT-like	family
Peptidase_MA_2	PF13485.1	gi|433593064|ref|YP_007282550.1|	-	0.015	15.3	0.0	0.033	14.2	0.0	1.6	1	0	0	1	1	1	0	Peptidase	MA	superfamily
DUF2268	PF10026.4	gi|433593064|ref|YP_007282550.1|	-	0.073	12.4	0.0	0.14	11.4	0.0	1.4	1	0	0	1	1	1	0	Predicted	Zn-dependent	protease	(DUF2268)
SBF	PF01758.11	gi|433593065|ref|YP_007282551.1|	-	1.1e-16	60.8	8.6	1.1e-16	60.8	5.9	2.6	2	1	1	3	3	3	1	Sodium	Bile	acid	symporter	family
GFA	PF04828.9	gi|433593067|ref|YP_007282553.1|	-	0.064	13.2	0.0	0.29	11.1	0.0	1.9	2	0	0	2	2	2	0	Glutathione-dependent	formaldehyde-activating	enzyme
Ribonuc_L-PSP	PF01042.16	gi|433593068|ref|YP_007282554.1|	-	6.1e-21	74.4	0.0	7.4e-21	74.1	0.0	1.0	1	0	0	1	1	1	1	Endoribonuclease	L-PSP
Duffy_binding	PF05424.6	gi|433593068|ref|YP_007282554.1|	-	0.01	15.6	0.0	0.014	15.2	0.0	1.2	1	0	0	1	1	1	0	Duffy	binding	domain
HTH_20	PF12840.2	gi|433593069|ref|YP_007282555.1|	-	5.5e-11	42.0	0.7	1e-10	41.2	0.1	1.7	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_5	PF01022.15	gi|433593069|ref|YP_007282555.1|	-	4.4e-08	32.6	0.4	8.2e-08	31.7	0.2	1.6	1	1	1	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
TrmB	PF01978.14	gi|433593069|ref|YP_007282555.1|	-	0.0064	16.1	0.0	0.011	15.4	0.0	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
GntR	PF00392.16	gi|433593069|ref|YP_007282555.1|	-	0.011	15.1	0.0	0.025	14.0	0.0	1.6	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
MarR_2	PF12802.2	gi|433593069|ref|YP_007282555.1|	-	0.017	14.7	0.1	0.063	12.9	0.1	2.1	1	1	0	1	1	1	0	MarR	family
PaaX	PF07848.7	gi|433593069|ref|YP_007282555.1|	-	0.022	14.7	0.0	0.037	14.0	0.0	1.5	1	0	0	1	1	1	0	PaaX-like	protein
HTH_34	PF13601.1	gi|433593069|ref|YP_007282555.1|	-	0.046	13.7	0.0	0.095	12.7	0.0	1.5	1	1	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_27	PF13463.1	gi|433593069|ref|YP_007282555.1|	-	0.046	14.0	0.0	0.095	13.0	0.0	1.6	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
SBF	PF01758.11	gi|433593070|ref|YP_007282556.1|	-	1.1e-47	161.8	10.7	1.1e-47	161.8	7.4	2.1	2	0	0	2	2	2	1	Sodium	Bile	acid	symporter	family
LMWPc	PF01451.16	gi|433593071|ref|YP_007282557.1|	-	1.6e-28	99.7	0.0	2.1e-28	99.3	0.0	1.2	1	0	0	1	1	1	1	Low	molecular	weight	phosphotyrosine	protein	phosphatase
ACP53EA	PF06313.6	gi|433593072|ref|YP_007282558.1|	-	0.038	13.9	0.0	0.053	13.4	0.0	1.3	1	1	0	1	1	1	0	Drosophila	ACP53EA	protein
Pyr_redox_dim	PF02852.17	gi|433593073|ref|YP_007282559.1|	-	7.4e-31	106.4	0.5	1.2e-30	105.7	0.4	1.3	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase,	dimerisation	domain
Pyr_redox_2	PF07992.9	gi|433593073|ref|YP_007282559.1|	-	1.3e-30	106.8	6.5	9.9e-30	103.9	4.5	2.9	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.22	gi|433593073|ref|YP_007282559.1|	-	5.1e-14	52.4	0.6	2e-13	50.5	0.1	2.2	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.1	gi|433593073|ref|YP_007282559.1|	-	9e-06	25.8	0.0	0.00052	20.1	0.0	2.3	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_2	PF00890.19	gi|433593073|ref|YP_007282559.1|	-	7e-05	21.8	0.6	0.002	17.0	0.1	2.4	1	1	1	2	2	2	1	FAD	binding	domain
FAD_oxidored	PF12831.2	gi|433593073|ref|YP_007282559.1|	-	0.0047	16.0	2.8	0.0047	16.0	1.9	1.9	2	0	0	2	2	2	1	FAD	dependent	oxidoreductase
K_oxygenase	PF13434.1	gi|433593073|ref|YP_007282559.1|	-	0.02	13.7	0.0	4.6	6.0	0.0	2.3	1	1	1	2	2	2	0	L-lysine	6-monooxygenase	(NADPH-requiring)
3HCDH_N	PF02737.13	gi|433593073|ref|YP_007282559.1|	-	0.048	13.3	0.6	0.048	13.3	0.4	1.8	2	0	0	2	2	2	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
GIDA	PF01134.17	gi|433593073|ref|YP_007282559.1|	-	0.12	11.1	6.6	0.08	11.7	1.8	2.5	2	1	0	2	2	2	0	Glucose	inhibited	division	protein	A
HxlR	PF01638.12	gi|433593074|ref|YP_007282560.1|	-	7.7e-18	63.9	0.0	8.5e-18	63.7	0.0	1.1	1	0	0	1	1	1	1	HxlR-like	helix-turn-helix
MarR_2	PF12802.2	gi|433593074|ref|YP_007282560.1|	-	0.00096	18.7	0.0	0.0015	18.1	0.0	1.3	1	0	0	1	1	1	1	MarR	family
PadR	PF03551.9	gi|433593074|ref|YP_007282560.1|	-	0.0014	18.3	0.0	0.0021	17.7	0.0	1.3	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
HTH_20	PF12840.2	gi|433593074|ref|YP_007282560.1|	-	0.0027	17.4	0.0	0.004	16.9	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_34	PF13601.1	gi|433593074|ref|YP_007282560.1|	-	0.0069	16.3	0.0	0.0096	15.9	0.0	1.1	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
MarR	PF01047.17	gi|433593074|ref|YP_007282560.1|	-	0.0098	15.5	0.1	0.02	14.5	0.0	1.6	2	0	0	2	2	2	1	MarR	family
DUF3385	PF11865.3	gi|433593074|ref|YP_007282560.1|	-	0.029	14.2	0.0	0.034	14.0	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3385)
FUR	PF01475.14	gi|433593074|ref|YP_007282560.1|	-	0.036	13.9	0.0	0.04	13.8	0.0	1.2	1	0	0	1	1	1	0	Ferric	uptake	regulator	family
DUF993	PF06187.6	gi|433593076|ref|YP_007282562.1|	-	0.0015	17.1	0.1	0.0023	16.5	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF993)
YqhG	PF11079.3	gi|433593076|ref|YP_007282562.1|	-	0.074	11.8	0.3	0.11	11.2	0.2	1.2	1	0	0	1	1	1	0	Bacterial	protein	YqhG	of	unknown	function
TSC22	PF01166.13	gi|433593082|ref|YP_007282568.1|	-	0.0053	16.7	0.6	0.0089	15.9	0.4	1.3	1	0	0	1	1	1	1	TSC-22/dip/bun	family
DUF2564	PF10819.3	gi|433593082|ref|YP_007282568.1|	-	0.018	15.1	0.2	0.025	14.6	0.1	1.4	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2564)
DUF3832	PF12909.2	gi|433593082|ref|YP_007282568.1|	-	0.11	12.5	0.2	0.17	11.9	0.1	1.4	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3832)
zinc_ribbon_2	PF13240.1	gi|433593084|ref|YP_007282570.1|	-	0.0044	16.4	1.2	2.1	7.9	0.0	2.3	2	0	0	2	2	2	2	zinc-ribbon	domain
DZR	PF12773.2	gi|433593084|ref|YP_007282570.1|	-	0.01	15.6	1.0	0.017	14.9	0.7	1.3	1	0	0	1	1	1	0	Double	zinc	ribbon
Nudix_N_2	PF14803.1	gi|433593084|ref|YP_007282570.1|	-	0.02	14.5	1.3	2.8	7.6	0.1	2.5	2	0	0	2	2	2	0	Nudix	N-terminal
DUF2318	PF10080.4	gi|433593084|ref|YP_007282570.1|	-	0.022	14.5	0.1	0.028	14.2	0.0	1.2	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2318)
DRP	PF06044.7	gi|433593084|ref|YP_007282570.1|	-	0.032	13.2	0.5	0.054	12.4	0.3	1.4	1	1	0	1	1	1	0	Dam-replacing	family
GFA	PF04828.9	gi|433593084|ref|YP_007282570.1|	-	0.032	14.1	1.2	1	9.3	0.2	2.1	1	1	1	2	2	2	0	Glutathione-dependent	formaldehyde-activating	enzyme
zinc-ribbons_6	PF07191.7	gi|433593084|ref|YP_007282570.1|	-	0.039	13.7	0.1	0.1	12.4	0.3	1.5	2	0	0	2	2	2	0	zinc-ribbons
RPA_interact_C	PF14768.1	gi|433593084|ref|YP_007282570.1|	-	0.05	13.9	0.5	0.071	13.5	0.4	1.2	1	0	0	1	1	1	0	Replication	protein	A	interacting	C-terminal
zinc_ribbon_4	PF13717.1	gi|433593084|ref|YP_007282570.1|	-	0.06	13.0	1.8	2.5	7.8	0.1	2.4	2	0	0	2	2	2	0	zinc-ribbon	domain
zinc_ribbon_5	PF13719.1	gi|433593084|ref|YP_007282570.1|	-	0.074	12.6	1.8	2.7	7.6	0.1	2.4	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-ribbon_3	PF13248.1	gi|433593084|ref|YP_007282570.1|	-	0.096	11.9	4.9	3.4	7.0	0.5	2.3	1	1	0	2	2	2	0	zinc-ribbon	domain
Lar_restr_allev	PF14354.1	gi|433593084|ref|YP_007282570.1|	-	0.1	12.9	3.4	0.3	11.4	2.4	1.8	1	1	0	1	1	1	0	Restriction	alleviation	protein	Lar
UPF0547	PF10571.4	gi|433593084|ref|YP_007282570.1|	-	0.72	9.5	3.5	4.7	7.0	2.4	2.0	1	1	1	2	2	2	0	Uncharacterised	protein	family	UPF0547
DNA_ligase_ZBD	PF03119.11	gi|433593084|ref|YP_007282570.1|	-	1.1	8.9	4.0	0.95	9.2	0.3	2.3	2	0	0	2	2	2	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
PhnA_Zn_Ribbon	PF08274.7	gi|433593084|ref|YP_007282570.1|	-	5.2	6.9	5.5	3.6	7.4	0.6	2.2	2	0	0	2	2	2	0	PhnA	Zinc-Ribbon
DUF2387	PF09526.5	gi|433593085|ref|YP_007282571.1|	-	0.006	16.4	0.2	0.011	15.6	0.1	1.3	1	0	0	1	1	1	1	Probable	metal-binding	protein	(DUF2387)
RNA_POL_M_15KD	PF02150.11	gi|433593085|ref|YP_007282571.1|	-	0.02	14.6	0.3	0.02	14.6	0.2	2.1	2	0	0	2	2	2	0	RNA	polymerases	M/15	Kd	subunit
Elf1	PF05129.8	gi|433593085|ref|YP_007282571.1|	-	0.04	13.6	0.0	0.055	13.1	0.0	1.3	1	0	0	1	1	1	0	Transcription	elongation	factor	Elf1	like
zf-ribbon_3	PF13248.1	gi|433593085|ref|YP_007282571.1|	-	0.24	10.6	1.8	2.8	7.2	0.0	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
PRA-PH	PF01503.12	gi|433593087|ref|YP_007282573.1|	-	0.036	14.3	0.2	0.047	13.9	0.1	1.3	1	0	0	1	1	1	0	Phosphoribosyl-ATP	pyrophosphohydrolase
E1-E2_ATPase	PF00122.15	gi|433593088|ref|YP_007282574.1|	-	4.4e-61	205.8	0.1	8.9e-61	204.8	0.0	1.5	1	0	0	1	1	1	1	E1-E2	ATPase
Hydrolase	PF00702.21	gi|433593088|ref|YP_007282574.1|	-	3.4e-47	161.6	5.9	3.4e-47	161.6	4.1	2.3	3	0	0	3	3	3	1	haloacid	dehalogenase-like	hydrolase
HMA	PF00403.21	gi|433593088|ref|YP_007282574.1|	-	1.1e-15	57.4	0.0	1.2e-14	54.1	0.0	2.6	2	0	0	2	2	2	1	Heavy-metal-associated	domain
HAD	PF12710.2	gi|433593088|ref|YP_007282574.1|	-	1e-14	55.1	0.0	2.9e-14	53.6	0.0	1.9	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_3	PF08282.7	gi|433593088|ref|YP_007282574.1|	-	0.00053	19.6	0.7	0.0066	16.0	0.3	2.2	2	0	0	2	2	2	1	haloacid	dehalogenase-like	hydrolase
HTH_10	PF04967.7	gi|433593089|ref|YP_007282575.1|	-	3.4e-15	55.3	0.0	7.1e-15	54.3	0.0	1.6	1	0	0	1	1	1	1	HTH	DNA	binding	domain
MarR_2	PF12802.2	gi|433593089|ref|YP_007282575.1|	-	7e-05	22.4	0.0	0.00026	20.5	0.0	2.0	2	0	0	2	2	2	1	MarR	family
HTH_30	PF13556.1	gi|433593089|ref|YP_007282575.1|	-	0.00012	21.5	0.1	0.0004	19.9	0.1	1.9	1	0	0	1	1	1	1	PucR	C-terminal	helix-turn-helix	domain
HTH_20	PF12840.2	gi|433593089|ref|YP_007282575.1|	-	0.0036	17.0	0.8	0.011	15.4	0.0	2.2	3	0	0	3	3	3	1	Helix-turn-helix	domain
HTH_8	PF02954.14	gi|433593089|ref|YP_007282575.1|	-	0.0038	16.7	0.5	0.0073	15.8	0.0	1.7	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	Fis	family
HTH_psq	PF05225.11	gi|433593089|ref|YP_007282575.1|	-	0.015	14.8	0.6	0.058	12.9	0.0	2.1	2	0	0	2	2	2	0	helix-turn-helix,	Psq	domain
HTH_24	PF13412.1	gi|433593089|ref|YP_007282575.1|	-	0.016	14.6	0.0	0.028	13.8	0.0	1.4	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HTH_IclR	PF09339.5	gi|433593089|ref|YP_007282575.1|	-	0.047	13.2	0.1	0.17	11.5	0.0	2.0	2	0	0	2	2	2	0	IclR	helix-turn-helix	domain
HTH_5	PF01022.15	gi|433593089|ref|YP_007282575.1|	-	0.079	12.6	0.0	0.16	11.6	0.0	1.5	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
HTH_28	PF13518.1	gi|433593089|ref|YP_007282575.1|	-	0.1	12.5	0.0	0.25	11.3	0.0	1.7	1	1	0	1	1	1	0	Helix-turn-helix	domain
Sigma70_r4_2	PF08281.7	gi|433593089|ref|YP_007282575.1|	-	0.11	12.0	0.0	0.43	10.0	0.0	1.9	2	0	0	2	2	2	0	Sigma-70,	region	4
HTH_17	PF12728.2	gi|433593089|ref|YP_007282575.1|	-	0.14	12.4	0.0	0.32	11.2	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain
RNA_POL_M_15KD	PF02150.11	gi|433593094|ref|YP_007282580.1|	-	0.031	13.9	9.7	0.9	9.2	0.2	4.8	5	0	0	5	5	5	0	RNA	polymerases	M/15	Kd	subunit
DZR	PF12773.2	gi|433593094|ref|YP_007282580.1|	-	0.6	9.9	13.1	0.17	11.7	0.4	3.8	3	1	1	4	4	4	0	Double	zinc	ribbon
HypA	PF01155.14	gi|433593094|ref|YP_007282580.1|	-	0.68	9.6	6.3	2.1	8.0	0.3	2.4	2	0	0	2	2	2	0	Hydrogenase	expression/synthesis	hypA	family
zinc_ribbon_2	PF13240.1	gi|433593094|ref|YP_007282580.1|	-	0.81	9.2	12.3	0.37	10.3	1.5	3.5	4	0	0	4	4	4	0	zinc-ribbon	domain
zf-Mss51	PF13824.1	gi|433593094|ref|YP_007282580.1|	-	2.7	7.9	6.5	47	3.9	1.5	3.3	2	1	0	2	2	2	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
zf-ribbon_3	PF13248.1	gi|433593094|ref|YP_007282580.1|	-	5.8	6.2	15.7	0.043	13.0	1.9	3.0	4	0	0	4	4	4	0	zinc-ribbon	domain
TFIIB	PF00382.14	gi|433593095|ref|YP_007282581.1|	-	6.3e-33	112.4	0.7	8.8e-18	63.8	0.2	2.3	2	0	0	2	2	2	2	Transcription	factor	TFIIB	repeat
TF_Zn_Ribbon	PF08271.7	gi|433593095|ref|YP_007282581.1|	-	3.6e-12	45.4	2.4	6.3e-12	44.6	1.7	1.4	1	0	0	1	1	1	1	TFIIB	zinc-binding
Cyclin_C	PF02984.14	gi|433593095|ref|YP_007282581.1|	-	0.0091	15.9	0.0	0.22	11.4	0.0	2.2	2	0	0	2	2	2	1	Cyclin,	C-terminal	domain
Sigma70_r4	PF04545.11	gi|433593095|ref|YP_007282581.1|	-	0.012	14.9	0.1	0.82	9.0	0.0	3.0	3	0	0	3	3	3	0	Sigma-70,	region	4
DZR	PF12773.2	gi|433593095|ref|YP_007282581.1|	-	0.024	14.4	1.1	0.051	13.3	0.7	1.4	1	0	0	1	1	1	0	Double	zinc	ribbon
zinc-ribbons_6	PF07191.7	gi|433593095|ref|YP_007282581.1|	-	0.07	12.9	0.9	0.14	11.9	0.6	1.5	1	0	0	1	1	1	0	zinc-ribbons
OrfB_Zn_ribbon	PF07282.6	gi|433593095|ref|YP_007282581.1|	-	0.081	12.5	1.1	0.19	11.4	0.7	1.5	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
HTH_24	PF13412.1	gi|433593095|ref|YP_007282581.1|	-	0.096	12.0	0.0	0.36	10.2	0.0	2.0	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
UPF0547	PF10571.4	gi|433593095|ref|YP_007282581.1|	-	0.41	10.3	2.3	0.77	9.5	1.6	1.4	1	0	0	1	1	1	0	Uncharacterised	protein	family	UPF0547
LacI	PF00356.16	gi|433593095|ref|YP_007282581.1|	-	3.3	7.4	6.3	1.6	8.3	1.3	2.7	3	0	0	3	3	3	0	Bacterial	regulatory	proteins,	lacI	family
SIR2_2	PF13289.1	gi|433593096|ref|YP_007282582.1|	-	8.5e-24	84.0	0.3	2.3e-23	82.6	0.2	1.8	2	0	0	2	2	2	1	SIR2-like	domain
CBP4	PF07960.6	gi|433593098|ref|YP_007282584.1|	-	0.15	11.6	0.0	0.21	11.2	0.0	1.2	1	0	0	1	1	1	0	CBP4
Phageshock_PspG	PF09583.5	gi|433593099|ref|YP_007282585.1|	-	0.12	12.4	4.8	0.16	12.0	3.4	1.3	1	0	0	1	1	1	0	Phage	shock	protein	G	(Phageshock_PspG)
tRNA_anti-codon	PF01336.20	gi|433593101|ref|YP_007282587.1|	-	0.00043	20.0	0.1	0.00078	19.2	0.1	1.4	1	0	0	1	1	1	1	OB-fold	nucleic	acid	binding	domain
ALMS_motif	PF15309.1	gi|433593101|ref|YP_007282587.1|	-	0.21	11.4	1.9	0.39	10.5	1.3	1.5	1	0	0	1	1	1	0	ALMS	motif
TrmB	PF01978.14	gi|433593103|ref|YP_007282589.1|	-	1.6e-09	37.2	0.2	3.2e-09	36.3	0.1	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_20	PF12840.2	gi|433593103|ref|YP_007282589.1|	-	1.3e-08	34.5	0.1	3.4e-08	33.1	0.1	1.7	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_24	PF13412.1	gi|433593103|ref|YP_007282589.1|	-	4.8e-08	32.2	0.1	1.1e-06	27.9	0.0	2.5	3	0	0	3	3	3	1	Winged	helix-turn-helix	DNA-binding
HTH_5	PF01022.15	gi|433593103|ref|YP_007282589.1|	-	1.4e-05	24.6	0.0	4e-05	23.1	0.0	1.8	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
HTH_IclR	PF09339.5	gi|433593103|ref|YP_007282589.1|	-	0.00029	20.3	0.4	0.001	18.6	0.1	2.1	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
MarR_2	PF12802.2	gi|433593103|ref|YP_007282589.1|	-	0.00029	20.4	0.4	0.0008	19.0	0.0	1.9	2	0	0	2	2	2	1	MarR	family
PadR	PF03551.9	gi|433593103|ref|YP_007282589.1|	-	0.0022	17.7	0.1	0.0046	16.7	0.0	1.7	1	1	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
HTH_29	PF13551.1	gi|433593103|ref|YP_007282589.1|	-	0.0069	16.5	0.1	0.016	15.3	0.0	1.7	1	1	0	1	1	1	1	Winged	helix-turn	helix
MarR	PF01047.17	gi|433593103|ref|YP_007282589.1|	-	0.0074	15.9	0.0	0.015	14.9	0.0	1.5	1	0	0	1	1	1	1	MarR	family
Penicillinase_R	PF03965.11	gi|433593103|ref|YP_007282589.1|	-	0.023	14.7	0.0	0.043	13.9	0.0	1.4	1	0	0	1	1	1	0	Penicillinase	repressor
HTH_DeoR	PF08220.7	gi|433593103|ref|YP_007282589.1|	-	0.029	13.8	0.0	0.1	12.1	0.0	1.9	2	0	0	2	2	2	0	DeoR-like	helix-turn-helix	domain
FeoC	PF09012.5	gi|433593103|ref|YP_007282589.1|	-	0.051	13.2	0.0	0.48	10.1	0.0	2.2	2	0	0	2	2	2	0	FeoC	like	transcriptional	regulator
HTH_11	PF08279.7	gi|433593103|ref|YP_007282589.1|	-	0.093	12.3	0.0	0.95	9.1	0.0	2.2	2	0	0	2	2	2	0	HTH	domain
HTH_27	PF13463.1	gi|433593103|ref|YP_007282589.1|	-	0.097	13.0	0.1	0.23	11.8	0.1	1.7	1	1	0	1	1	1	0	Winged	helix	DNA-binding	domain
F-112	PF09645.5	gi|433593103|ref|YP_007282589.1|	-	0.11	12.4	0.0	16	5.4	0.0	2.2	2	0	0	2	2	2	0	F-112	protein
HTH_45	PF14947.1	gi|433593103|ref|YP_007282589.1|	-	0.15	11.8	0.0	0.38	10.5	0.0	1.6	1	0	0	1	1	1	0	Winged	helix-turn-helix
FYVE	PF01363.16	gi|433593104|ref|YP_007282590.1|	-	0.79	9.6	4.5	0.65	9.9	1.4	1.9	1	1	1	2	2	2	0	FYVE	zinc	finger
DZR	PF12773.2	gi|433593104|ref|YP_007282590.1|	-	4.7	7.0	7.4	1.5	8.6	2.5	2.1	1	1	1	2	2	2	0	Double	zinc	ribbon
Lactamase_B	PF00753.22	gi|433593106|ref|YP_007282592.1|	-	6.7e-12	45.4	7.0	6.7e-12	45.4	4.8	2.0	2	0	0	2	2	2	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.2	gi|433593106|ref|YP_007282592.1|	-	1.3e-09	37.8	2.5	2e-09	37.2	0.3	2.1	2	0	0	2	2	2	1	Beta-lactamase	superfamily	domain
Creatininase	PF02633.9	gi|433593107|ref|YP_007282593.1|	-	3.1e-64	216.3	0.4	3.5e-64	216.1	0.3	1.0	1	0	0	1	1	1	1	Creatinine	amidohydrolase
Parvo_coat_N	PF08398.5	gi|433593108|ref|YP_007282594.1|	-	0.009	15.7	0.0	0.026	14.3	0.0	1.7	1	1	0	1	1	1	1	Parvovirus	coat	protein	VP1
HTH_32	PF13565.1	gi|433593108|ref|YP_007282594.1|	-	0.13	13.0	0.0	0.17	12.6	0.0	1.3	1	1	0	1	1	1	0	Homeodomain-like	domain
DivIC	PF04977.10	gi|433593109|ref|YP_007282595.1|	-	0.028	13.8	0.9	0.07	12.6	0.6	1.6	1	0	0	1	1	1	0	Septum	formation	initiator
SlyX	PF04102.7	gi|433593109|ref|YP_007282595.1|	-	0.033	14.5	1.0	0.11	12.8	0.2	2.2	3	0	0	3	3	3	0	SlyX
ATG16	PF08614.6	gi|433593109|ref|YP_007282595.1|	-	0.043	13.6	2.2	0.051	13.4	1.1	1.4	1	1	0	1	1	1	0	Autophagy	protein	16	(ATG16)
TMF_DNA_bd	PF12329.3	gi|433593109|ref|YP_007282595.1|	-	0.089	12.6	1.0	0.17	11.6	0.7	1.4	1	0	0	1	1	1	0	TATA	element	modulatory	factor	1	DNA	binding
DUF3484	PF11983.3	gi|433593109|ref|YP_007282595.1|	-	0.15	12.9	0.3	0.42	11.4	0.0	1.9	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF3484)
Prefoldin	PF02996.12	gi|433593109|ref|YP_007282595.1|	-	0.22	11.1	1.6	0.57	9.8	1.1	1.7	1	0	0	1	1	1	0	Prefoldin	subunit
AAA_10	PF12846.2	gi|433593110|ref|YP_007282596.1|	-	4.7e-22	78.7	0.2	7.5e-22	78.1	0.2	1.2	1	0	0	1	1	1	1	AAA-like	domain
TrwB_AAD_bind	PF10412.4	gi|433593110|ref|YP_007282596.1|	-	5.5e-09	35.1	0.0	0.00015	20.4	0.0	2.2	2	0	0	2	2	2	2	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
TraG-D_C	PF12696.2	gi|433593110|ref|YP_007282596.1|	-	8e-08	32.2	0.0	1.8e-07	31.0	0.0	1.6	1	0	0	1	1	1	1	TraM	recognition	site	of	TraD	and	TraG
T4SS-DNA_transf	PF02534.9	gi|433593110|ref|YP_007282596.1|	-	1.8e-06	26.8	0.0	5.4e-05	21.9	0.1	2.1	2	0	0	2	2	2	1	Type	IV	secretory	system	Conjugative	DNA	transfer
FtsK_SpoIIIE	PF01580.13	gi|433593110|ref|YP_007282596.1|	-	0.0017	17.8	0.0	0.0063	16.0	0.0	1.9	1	0	0	1	1	1	1	FtsK/SpoIIIE	family
Pox_D5	PF03288.11	gi|433593110|ref|YP_007282596.1|	-	0.018	15.2	0.0	0.042	14.1	0.0	1.6	1	0	0	1	1	1	0	Poxvirus	D5	protein-like
NACHT	PF05729.7	gi|433593110|ref|YP_007282596.1|	-	0.019	14.6	0.0	0.073	12.7	0.0	1.9	2	0	0	2	2	2	0	NACHT	domain
ParB	PF08775.5	gi|433593110|ref|YP_007282596.1|	-	0.021	15.1	0.1	0.045	14.0	0.1	1.5	1	0	0	1	1	1	0	ParB	family
DUF87	PF01935.12	gi|433593110|ref|YP_007282596.1|	-	0.034	13.9	0.0	0.11	12.2	0.0	1.9	1	1	0	1	1	1	0	Domain	of	unknown	function	DUF87
Rsa3	PF14615.1	gi|433593111|ref|YP_007282597.1|	-	0.07	12.4	0.0	0.18	11.1	0.0	1.7	1	0	0	1	1	1	0	Ribosome-assembly	protein	3
AAA_10	PF12846.2	gi|433593112|ref|YP_007282598.1|	-	9.5e-41	140.1	1.9	1.4e-40	139.6	0.2	2.1	2	0	0	2	2	2	1	AAA-like	domain
Zot	PF05707.7	gi|433593112|ref|YP_007282598.1|	-	0.00016	21.1	0.1	0.016	14.6	0.0	2.5	2	0	0	2	2	2	1	Zonular	occludens	toxin	(Zot)
TraG-D_C	PF12696.2	gi|433593112|ref|YP_007282598.1|	-	0.00041	20.2	0.0	0.00092	19.0	0.0	1.6	1	0	0	1	1	1	1	TraM	recognition	site	of	TraD	and	TraG
AAA_22	PF13401.1	gi|433593112|ref|YP_007282598.1|	-	0.0016	18.5	0.2	0.47	10.5	0.1	2.6	2	0	0	2	2	2	2	AAA	domain
DUF883	PF05957.8	gi|433593113|ref|YP_007282599.1|	-	0.53	10.7	4.6	1.7	9.1	3.2	1.8	1	0	0	1	1	1	0	Bacterial	protein	of	unknown	function	(DUF883)
TrbC	PF04956.8	gi|433593116|ref|YP_007282602.1|	-	0.0024	17.8	0.2	0.0037	17.2	0.2	1.2	1	0	0	1	1	1	1	TrbC/VIRB2	family
RHH_3	PF12651.2	gi|433593117|ref|YP_007282603.1|	-	0.041	13.6	0.2	0.55	9.9	0.0	2.8	4	0	0	4	4	4	0	Ribbon-helix-helix	domain
C1_1	PF00130.17	gi|433593118|ref|YP_007282604.1|	-	0.0011	18.6	1.3	0.0011	18.6	0.9	2.1	1	1	1	2	2	2	1	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
Ribosomal_L40e	PF01020.12	gi|433593118|ref|YP_007282604.1|	-	0.0012	18.3	0.8	0.0012	18.3	0.6	1.5	2	0	0	2	2	2	1	Ribosomal	L40e	family
zf-B_box	PF00643.19	gi|433593118|ref|YP_007282604.1|	-	0.013	15.3	12.4	0.018	14.9	4.7	2.4	2	1	0	2	2	2	0	B-box	zinc	finger
zf-RING_5	PF14634.1	gi|433593118|ref|YP_007282604.1|	-	0.023	14.4	9.2	0.031	13.9	6.4	1.2	1	0	0	1	1	1	0	zinc-RING	finger	domain
zf-C3HC4_3	PF13920.1	gi|433593118|ref|YP_007282604.1|	-	0.026	14.1	7.0	0.069	12.8	4.8	1.7	1	1	0	1	1	1	0	Zinc	finger,	C3HC4	type	(RING	finger)
DZR	PF12773.2	gi|433593118|ref|YP_007282604.1|	-	0.068	13.0	9.7	0.94	9.3	0.7	2.3	1	1	1	2	2	2	0	Double	zinc	ribbon
zf-HIT	PF04438.11	gi|433593118|ref|YP_007282604.1|	-	0.089	12.4	8.8	0.35	10.5	3.3	2.3	2	0	0	2	2	2	0	HIT	zinc	finger
zf-C3HC4_2	PF13923.1	gi|433593118|ref|YP_007282604.1|	-	0.14	12.1	9.5	0.27	11.3	6.6	1.6	1	1	0	1	1	1	0	Zinc	finger,	C3HC4	type	(RING	finger)
zf-UDP	PF14569.1	gi|433593118|ref|YP_007282604.1|	-	0.18	11.6	4.7	0.23	11.2	3.3	1.2	1	0	0	1	1	1	0	Zinc-binding	RING-finger
zf-MYND	PF01753.13	gi|433593118|ref|YP_007282604.1|	-	0.18	11.6	3.4	12	5.8	2.3	2.3	1	1	0	1	1	1	0	MYND	finger
zf-MIZ	PF02891.15	gi|433593118|ref|YP_007282604.1|	-	0.2	11.2	4.9	0.25	10.8	3.4	1.2	1	0	0	1	1	1	0	MIZ/SP-RING	zinc	finger
zf-RING-like	PF08746.6	gi|433593118|ref|YP_007282604.1|	-	0.21	11.6	8.0	0.4	10.7	5.6	1.5	1	1	0	1	1	1	0	RING-like	domain
zf-RING_2	PF13639.1	gi|433593118|ref|YP_007282604.1|	-	0.21	11.4	8.1	0.28	11.0	5.6	1.3	1	0	0	1	1	1	0	Ring	finger	domain
ArfGap	PF01412.13	gi|433593118|ref|YP_007282604.1|	-	0.36	10.6	4.3	0.44	10.3	3.0	1.2	1	0	0	1	1	1	0	Putative	GTPase	activating	protein	for	Arf
zf-H2C2_2	PF13465.1	gi|433593118|ref|YP_007282604.1|	-	0.55	10.6	0.0	0.55	10.6	0.0	3.5	3	1	1	4	4	4	0	Zinc-finger	double	domain
zf-ribbon_3	PF13248.1	gi|433593118|ref|YP_007282604.1|	-	0.77	9.0	12.5	2.5	7.4	0.0	3.3	2	1	0	3	3	3	0	zinc-ribbon	domain
LIM	PF00412.17	gi|433593118|ref|YP_007282604.1|	-	1.4	9.0	8.1	11	6.2	5.6	2.2	1	1	0	1	1	1	0	LIM	domain
Ogr_Delta	PF04606.7	gi|433593118|ref|YP_007282604.1|	-	2.4	7.8	0.1	2.4	7.8	0.0	2.9	3	1	0	3	3	3	0	Ogr/Delta-like	zinc	finger
zf-RING_4	PF14570.1	gi|433593118|ref|YP_007282604.1|	-	3.2	7.4	11.0	6.7	6.3	7.6	1.6	1	1	0	1	1	1	0	RING/Ubox	like	zinc-binding	domain
NinE	PF05322.6	gi|433593118|ref|YP_007282604.1|	-	4.1	7.2	5.7	29	4.4	4.0	2.0	1	1	0	1	1	1	0	NINE	Protein
Zn_Tnp_IS1595	PF12760.2	gi|433593118|ref|YP_007282604.1|	-	4.2	7.2	14.3	23	4.8	4.7	2.6	1	1	2	3	3	2	0	Transposase	zinc-ribbon	domain
zf-C2H2	PF00096.21	gi|433593118|ref|YP_007282604.1|	-	6.8	7.2	19.0	11	6.5	0.1	4.0	4	0	0	4	4	4	0	Zinc	finger,	C2H2	type
HypA	PF01155.14	gi|433593118|ref|YP_007282604.1|	-	8.7	6.0	8.4	82	2.9	5.8	2.1	1	1	0	1	1	1	0	Hydrogenase	expression/synthesis	hypA	family
zinc_ribbon_6	PF14599.1	gi|433593118|ref|YP_007282604.1|	-	9.1	6.1	14.8	1.6	8.5	1.3	3.1	1	1	1	2	2	2	0	Zinc-ribbon
PSII_BNR	PF14870.1	gi|433593119|ref|YP_007282605.1|	-	8.2e-06	25.0	2.5	0.095	11.6	0.0	3.2	2	1	0	3	3	3	2	Photosynthesis	system	II	assembly	factor	YCF48
BNR_2	PF13088.1	gi|433593119|ref|YP_007282605.1|	-	3e-05	23.4	4.2	0.94	8.7	0.0	3.9	1	1	0	3	3	3	3	BNR	repeat-like	domain
BNR	PF02012.15	gi|433593119|ref|YP_007282605.1|	-	0.00057	19.3	30.6	0.13	12.1	0.1	6.2	7	0	0	7	7	7	4	BNR/Asp-box	repeat
DUF4185	PF13810.1	gi|433593119|ref|YP_007282605.1|	-	0.0066	15.3	2.7	1.4	7.7	0.0	3.8	2	2	0	3	3	3	1	Domain	of	unknown	function	(DUF4185)
End_beta_propel	PF12217.3	gi|433593119|ref|YP_007282605.1|	-	0.032	12.8	1.3	5.4	5.5	0.0	3.6	1	1	4	5	5	5	0	Catalytic	beta	propeller	domain	of	bacteriophage	endosialidase
DUF2656	PF10847.3	gi|433593119|ref|YP_007282605.1|	-	0.067	13.1	0.0	1.9	8.4	0.0	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2656)
PQQ_3	PF13570.1	gi|433593119|ref|YP_007282605.1|	-	1.1	9.6	13.1	7.4	7.0	0.0	5.2	6	1	0	6	6	6	0	PQQ-like	domain
Mo-co_dimer	PF03404.11	gi|433593119|ref|YP_007282605.1|	-	1.6	8.3	6.9	48	3.5	0.0	3.9	2	1	1	4	4	4	0	Mo-co	oxidoreductase	dimerisation	domain
DUF1931	PF09123.6	gi|433593120|ref|YP_007282606.1|	-	0.00038	20.4	0.5	0.0004	20.3	0.4	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1931)
Histone	PF00125.19	gi|433593120|ref|YP_007282606.1|	-	0.00085	19.3	0.0	0.0012	18.9	0.0	1.4	1	1	0	1	1	1	1	Core	histone	H2A/H2B/H3/H4
CBFD_NFYB_HMF	PF00808.18	gi|433593120|ref|YP_007282606.1|	-	0.0012	18.8	0.0	0.0015	18.5	0.0	1.3	1	1	0	1	1	1	1	Histone-like	transcription	factor	(CBF/NF-Y)	and	archaeal	histone
SBP_bac_7	PF03480.8	gi|433593120|ref|YP_007282606.1|	-	0.072	12.1	0.0	0.084	11.9	0.0	1.1	1	0	0	1	1	1	0	Bacterial	extracellular	solute-binding	protein,	family	7
Glutaredoxin	PF00462.19	gi|433593120|ref|YP_007282606.1|	-	0.16	11.9	0.1	0.22	11.5	0.1	1.2	1	0	0	1	1	1	0	Glutaredoxin
PadR	PF03551.9	gi|433593121|ref|YP_007282607.1|	-	1.4e-14	53.6	0.8	1.6e-14	53.3	0.6	1.1	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
HTH_45	PF14947.1	gi|433593121|ref|YP_007282607.1|	-	0.0013	18.4	0.1	0.0022	17.7	0.1	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix
HTH_27	PF13463.1	gi|433593121|ref|YP_007282607.1|	-	0.012	15.9	0.0	0.019	15.2	0.0	1.4	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
DUF2746	PF10874.3	gi|433593123|ref|YP_007282609.1|	-	0.076	13.2	0.3	0.089	12.9	0.2	1.2	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2746)
RHH_1	PF01402.16	gi|433593123|ref|YP_007282609.1|	-	0.092	12.6	0.1	0.11	12.4	0.1	1.3	1	1	0	1	1	1	0	Ribbon-helix-helix	protein,	copG	family
E1-E2_ATPase	PF00122.15	gi|433593124|ref|YP_007282610.1|	-	4.2e-54	183.0	5.7	2.7e-53	180.3	0.6	2.4	2	0	0	2	2	2	2	E1-E2	ATPase
Hydrolase	PF00702.21	gi|433593124|ref|YP_007282610.1|	-	6.2e-44	150.9	9.0	1.1e-43	150.1	6.2	1.5	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
HAD	PF12710.2	gi|433593124|ref|YP_007282610.1|	-	2e-18	67.2	0.3	3.9e-18	66.3	0.2	1.5	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_3	PF08282.7	gi|433593124|ref|YP_007282610.1|	-	3.8e-05	23.3	0.1	0.0013	18.3	0.1	2.2	2	0	0	2	2	2	1	haloacid	dehalogenase-like	hydrolase
HMA	PF00403.21	gi|433593125|ref|YP_007282611.1|	-	8.4e-19	67.4	1.9	9.3e-19	67.3	1.3	1.0	1	0	0	1	1	1	1	Heavy-metal-associated	domain
MafB19-deam	PF14437.1	gi|433593125|ref|YP_007282611.1|	-	0.043	13.4	1.2	0.059	13.0	0.2	1.6	1	1	1	2	2	2	0	MafB19-like	deaminase
Fer4_15	PF13459.1	gi|433593125|ref|YP_007282611.1|	-	0.25	11.9	1.4	0.32	11.5	1.0	1.2	1	0	0	1	1	1	0	4Fe-4S	single	cluster	domain
DUF360	PF04020.8	gi|433593127|ref|YP_007282613.1|	-	0.23	11.8	4.6	0.29	11.5	3.2	1.1	1	0	0	1	1	1	0	Membrane	protein	of	unknown	function
Oxidored_q2	PF00420.19	gi|433593127|ref|YP_007282613.1|	-	0.27	10.8	0.1	0.27	10.8	0.1	2.5	1	1	1	2	2	2	0	NADH-ubiquinone/plastoquinone	oxidoreductase	chain	4L
MerC	PF03203.9	gi|433593127|ref|YP_007282613.1|	-	0.56	10.5	4.9	0.84	10.0	3.4	1.4	1	1	0	1	1	1	0	MerC	mercury	resistance	protein
DUF3040	PF11239.3	gi|433593127|ref|YP_007282613.1|	-	0.78	9.8	3.7	1	9.4	2.3	1.5	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3040)
DUF2484	PF10658.4	gi|433593127|ref|YP_007282613.1|	-	6.6	6.9	6.5	11	6.2	0.9	2.2	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2484)
MarR_2	PF12802.2	gi|433593128|ref|YP_007282614.1|	-	4.3e-10	39.1	0.0	6.7e-10	38.4	0.0	1.4	1	0	0	1	1	1	1	MarR	family
HTH_20	PF12840.2	gi|433593128|ref|YP_007282614.1|	-	5.3e-09	35.7	0.1	8.5e-09	35.0	0.1	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_24	PF13412.1	gi|433593128|ref|YP_007282614.1|	-	5.6e-09	35.2	0.0	8.2e-09	34.7	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_IclR	PF09339.5	gi|433593128|ref|YP_007282614.1|	-	7e-08	31.9	0.1	1.1e-07	31.2	0.1	1.3	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_AsnC-type	PF13404.1	gi|433593128|ref|YP_007282614.1|	-	9.3e-06	25.0	0.3	1.6e-05	24.2	0.2	1.5	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
MarR	PF01047.17	gi|433593128|ref|YP_007282614.1|	-	9.5e-06	25.2	0.0	1.7e-05	24.4	0.0	1.4	1	0	0	1	1	1	1	MarR	family
HTH_11	PF08279.7	gi|433593128|ref|YP_007282614.1|	-	7.4e-05	22.3	0.0	0.00016	21.2	0.0	1.5	2	0	0	2	2	2	1	HTH	domain
HTH_27	PF13463.1	gi|433593128|ref|YP_007282614.1|	-	0.00014	22.1	0.1	0.00022	21.4	0.0	1.3	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
Fe_dep_repress	PF01325.14	gi|433593128|ref|YP_007282614.1|	-	0.00023	21.0	0.1	0.00035	20.4	0.0	1.3	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
TrmB	PF01978.14	gi|433593128|ref|YP_007282614.1|	-	0.00026	20.6	0.0	0.00041	19.9	0.0	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_5	PF01022.15	gi|433593128|ref|YP_007282614.1|	-	0.00036	20.1	0.0	0.00054	19.5	0.0	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
Sigma70_r4_2	PF08281.7	gi|433593128|ref|YP_007282614.1|	-	0.0011	18.3	0.1	0.0017	17.7	0.1	1.3	1	0	0	1	1	1	1	Sigma-70,	region	4
HTH_23	PF13384.1	gi|433593128|ref|YP_007282614.1|	-	0.0011	18.5	0.0	0.002	17.6	0.0	1.4	1	0	0	1	1	1	1	Homeodomain-like	domain
GntR	PF00392.16	gi|433593128|ref|YP_007282614.1|	-	0.004	16.5	0.1	0.0067	15.8	0.1	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
HTH_Crp_2	PF13545.1	gi|433593128|ref|YP_007282614.1|	-	0.0058	16.3	0.0	0.0077	15.9	0.0	1.3	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
Sigma70_r4	PF04545.11	gi|433593128|ref|YP_007282614.1|	-	0.008	15.4	0.0	0.012	14.8	0.0	1.3	1	0	0	1	1	1	1	Sigma-70,	region	4
HTH_DeoR	PF08220.7	gi|433593128|ref|YP_007282614.1|	-	0.014	14.9	0.1	0.024	14.1	0.1	1.3	1	0	0	1	1	1	0	DeoR-like	helix-turn-helix	domain
RP-C	PF03428.8	gi|433593128|ref|YP_007282614.1|	-	0.021	14.3	0.0	0.027	13.9	0.0	1.2	1	0	0	1	1	1	0	Replication	protein	C	N-terminal	domain
Penicillinase_R	PF03965.11	gi|433593128|ref|YP_007282614.1|	-	0.028	14.5	0.0	0.039	14.0	0.0	1.3	1	0	0	1	1	1	0	Penicillinase	repressor
Rrf2	PF02082.15	gi|433593128|ref|YP_007282614.1|	-	0.031	14.4	0.0	0.048	13.7	0.0	1.2	1	0	0	1	1	1	0	Transcriptional	regulator
DUF2250	PF10007.4	gi|433593128|ref|YP_007282614.1|	-	0.034	14.0	0.0	0.066	13.1	0.0	1.5	1	1	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
Crp	PF00325.15	gi|433593128|ref|YP_007282614.1|	-	0.046	13.2	0.2	0.063	12.7	0.1	1.3	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	crp	family
HTH_36	PF13730.1	gi|433593128|ref|YP_007282614.1|	-	0.053	13.6	0.0	0.071	13.2	0.0	1.2	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_28	PF13518.1	gi|433593128|ref|YP_007282614.1|	-	0.058	13.4	0.0	0.1	12.6	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_3	PF01381.17	gi|433593128|ref|YP_007282614.1|	-	0.082	12.7	0.0	0.21	11.4	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix
DUF479	PF04336.7	gi|433593128|ref|YP_007282614.1|	-	0.15	12.1	0.0	0.2	11.8	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF479
DoxX	PF07681.7	gi|433593129|ref|YP_007282615.1|	-	7.7e-12	45.4	10.8	7.7e-12	45.4	7.5	1.9	2	0	0	2	2	2	1	DoxX
NnrU	PF07298.6	gi|433593129|ref|YP_007282615.1|	-	0.025	13.9	5.2	0.035	13.4	3.6	1.4	1	1	0	1	1	1	0	NnrU	protein
SHOCT	PF09851.4	gi|433593130|ref|YP_007282616.1|	-	3.8e-11	42.0	1.1	5.2e-11	41.6	0.8	1.2	1	0	0	1	1	1	1	Short	C-terminal	domain
GvpG	PF05120.7	gi|433593130|ref|YP_007282616.1|	-	0.00098	18.8	0.2	0.0017	18.0	0.1	1.5	1	1	0	1	1	1	1	Gas	vesicle	protein	G
DUF1707	PF08044.6	gi|433593130|ref|YP_007282616.1|	-	0.0023	17.6	1.0	0.0023	17.6	0.7	1.5	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF1707)
Herpes_LMP1	PF05297.6	gi|433593130|ref|YP_007282616.1|	-	0.012	14.5	0.0	0.015	14.2	0.0	1.1	1	0	0	1	1	1	0	Herpesvirus	latent	membrane	protein	1	(LMP1)
DUF412	PF04217.8	gi|433593130|ref|YP_007282616.1|	-	0.2	11.4	0.7	0.34	10.6	0.5	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF412
Usp	PF00582.21	gi|433593131|ref|YP_007282617.1|	-	1.7e-27	96.3	2.6	1.9e-27	96.1	1.8	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
DNA_photolyase	PF00875.13	gi|433593131|ref|YP_007282617.1|	-	0.037	13.7	0.2	0.079	12.7	0.1	1.5	1	1	0	1	1	1	0	DNA	photolyase
DUF318	PF03773.8	gi|433593132|ref|YP_007282618.1|	-	1e-43	149.5	15.4	1.9e-43	148.6	10.6	1.4	1	1	0	1	1	1	1	Predicted	permease
YHS	PF04945.8	gi|433593132|ref|YP_007282618.1|	-	5e-20	71.0	9.0	1.3e-14	53.7	2.5	2.3	2	0	0	2	2	2	2	YHS	domain
zf-FCS	PF06467.9	gi|433593132|ref|YP_007282618.1|	-	3e-05	23.5	4.7	0.013	15.1	0.3	2.4	2	0	0	2	2	2	2	MYM-type	Zinc	finger	with	FCS	sequence	motif
Arc_trans_TRASH	PF08394.5	gi|433593132|ref|YP_007282618.1|	-	0.034	14.3	0.2	0.091	12.9	0.1	1.7	1	0	0	1	1	1	0	Archaeal	TRASH	domain
zf-HIT	PF04438.11	gi|433593132|ref|YP_007282618.1|	-	0.2	11.3	1.1	0.47	10.1	0.1	2.0	2	0	0	2	2	2	0	HIT	zinc	finger
RPAP2_Rtr1	PF04181.8	gi|433593132|ref|YP_007282618.1|	-	0.26	11.4	1.3	13	5.9	0.0	2.2	2	0	0	2	2	2	0	Rtr1/RPAP2	family
SHOCT	PF09851.4	gi|433593133|ref|YP_007282619.1|	-	9.9e-08	31.1	6.5	1.3e-07	30.8	4.5	1.2	1	0	0	1	1	1	1	Short	C-terminal	domain
DUF1707	PF08044.6	gi|433593133|ref|YP_007282619.1|	-	1.7e-05	24.4	3.3	2.8e-05	23.7	2.3	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1707)
NfeD	PF01957.13	gi|433593133|ref|YP_007282619.1|	-	0.017	15.2	1.9	0.022	14.8	1.3	1.1	1	0	0	1	1	1	0	NfeD-like	C-terminal,	partner-binding
Yip1	PF04893.12	gi|433593133|ref|YP_007282619.1|	-	0.024	14.1	5.7	0.031	13.7	3.9	1.1	1	0	0	1	1	1	0	Yip1	domain
GvpG	PF05120.7	gi|433593133|ref|YP_007282619.1|	-	0.03	14.1	0.7	0.053	13.3	0.5	1.4	1	0	0	1	1	1	0	Gas	vesicle	protein	G
Tetraspannin	PF00335.15	gi|433593133|ref|YP_007282619.1|	-	0.068	12.4	0.0	0.093	11.9	0.0	1.2	1	0	0	1	1	1	0	Tetraspanin	family
DMAP_binding	PF06464.6	gi|433593133|ref|YP_007282619.1|	-	0.096	13.2	0.5	0.12	12.9	0.4	1.1	1	0	0	1	1	1	0	DMAP1-binding	Domain
Tox-WTIP	PF15654.1	gi|433593133|ref|YP_007282619.1|	-	0.12	11.9	0.4	0.21	11.2	0.3	1.3	1	0	0	1	1	1	0	Toxin	with	a	conserved	tryptophan	and	TIP	tripeptide	motif
DUF3007	PF11460.3	gi|433593133|ref|YP_007282619.1|	-	0.13	12.3	3.0	2.7	8.1	0.0	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3007)
Halogen_Hydrol	PF10112.4	gi|433593133|ref|YP_007282619.1|	-	0.31	10.4	1.6	0.68	9.3	0.0	1.8	1	1	1	2	2	2	0	5-bromo-4-chloroindolyl	phosphate	hydrolysis	protein
Metal_resist	PF13801.1	gi|433593133|ref|YP_007282619.1|	-	0.87	9.5	3.9	3.2	7.7	0.0	2.1	2	0	0	2	2	2	0	Heavy-metal	resistance
DUF2970	PF11174.3	gi|433593133|ref|YP_007282619.1|	-	1.1	8.8	7.0	0.81	9.3	0.6	2.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2970)
Na_Pi_cotrans	PF02690.10	gi|433593134|ref|YP_007282620.1|	-	0.062	13.0	0.2	0.58	9.8	0.2	2.1	2	0	0	2	2	2	0	Na+/Pi-cotransporter
DUF981	PF06168.6	gi|433593134|ref|YP_007282620.1|	-	0.1	12.4	3.4	0.11	12.2	0.7	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF981)
YrhK	PF14145.1	gi|433593134|ref|YP_007282620.1|	-	8.1	6.1	7.3	1.6	8.4	1.3	2.5	2	1	0	2	2	2	0	YrhK-like	protein
HTH_20	PF12840.2	gi|433593135|ref|YP_007282621.1|	-	1.2e-15	57.0	0.3	2.3e-15	56.1	0.2	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_5	PF01022.15	gi|433593135|ref|YP_007282621.1|	-	0.0001	21.8	0.1	0.017	14.7	0.0	2.5	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
TFIIE_alpha	PF02002.12	gi|433593135|ref|YP_007282621.1|	-	0.00015	21.2	0.1	0.00035	20.0	0.0	1.8	1	1	1	2	2	2	1	TFIIE	alpha	subunit
HTH_12	PF08461.5	gi|433593135|ref|YP_007282621.1|	-	0.00055	19.6	0.1	0.001	18.7	0.1	1.4	1	0	0	1	1	1	1	Ribonuclease	R	winged-helix	domain
TrmB	PF01978.14	gi|433593135|ref|YP_007282621.1|	-	0.0013	18.3	0.6	0.013	15.1	0.0	2.5	2	1	1	3	3	3	1	Sugar-specific	transcriptional	regulator	TrmB
Cdc6_C	PF09079.6	gi|433593135|ref|YP_007282621.1|	-	0.0015	18.2	0.1	0.004	16.8	0.1	1.7	1	1	0	1	1	1	1	CDC6,	C	terminal
FUR	PF01475.14	gi|433593135|ref|YP_007282621.1|	-	0.015	15.2	0.1	0.024	14.5	0.1	1.5	1	1	0	1	1	1	0	Ferric	uptake	regulator	family
PadR	PF03551.9	gi|433593135|ref|YP_007282621.1|	-	0.056	13.2	0.0	0.099	12.4	0.0	1.4	1	0	0	1	1	1	0	Transcriptional	regulator	PadR-like	family
HMA	PF00403.21	gi|433593136|ref|YP_007282622.1|	-	8.1e-14	51.5	0.0	9e-14	51.3	0.0	1.0	1	0	0	1	1	1	1	Heavy-metal-associated	domain
DUF276	PF03434.8	gi|433593136|ref|YP_007282622.1|	-	0.021	13.8	0.0	0.021	13.8	0.0	1.1	1	0	0	1	1	1	0	DUF276
E1-E2_ATPase	PF00122.15	gi|433593137|ref|YP_007282623.1|	-	5.8e-49	166.1	0.1	5.8e-49	166.1	0.1	2.4	2	1	0	2	2	2	1	E1-E2	ATPase
Hydrolase	PF00702.21	gi|433593137|ref|YP_007282623.1|	-	2.9e-41	142.2	11.2	5.4e-41	141.3	7.8	1.5	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
HAD	PF12710.2	gi|433593137|ref|YP_007282623.1|	-	6e-16	59.1	0.2	1.2e-15	58.2	0.1	1.5	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_3	PF08282.7	gi|433593137|ref|YP_007282623.1|	-	0.0017	17.9	2.0	0.012	15.2	1.1	2.1	2	0	0	2	2	2	1	haloacid	dehalogenase-like	hydrolase
FmdE	PF02663.9	gi|433593138|ref|YP_007282624.1|	-	0.013	15.4	0.0	0.026	14.3	0.0	1.6	1	1	0	1	1	1	0	FmdE,	Molybdenum	formylmethanofuran	dehydrogenase	operon
Phage_int_SAM_1	PF02899.12	gi|433593139|ref|YP_007282625.1|	-	4.9e-06	26.6	0.0	0.0011	19.0	0.0	3.3	3	0	0	3	3	3	1	Phage	integrase,	N-terminal	SAM-like	domain
Phage_integrase	PF00589.17	gi|433593139|ref|YP_007282625.1|	-	0.0023	17.6	0.0	0.028	14.0	0.0	2.3	1	1	0	1	1	1	1	Phage	integrase	family
Phage_int_SAM_4	PF13495.1	gi|433593139|ref|YP_007282625.1|	-	0.016	15.4	0.0	0.037	14.3	0.0	1.6	1	0	0	1	1	1	0	Phage	integrase,	N-terminal	SAM-like	domain
DDE_Tnp_1	PF01609.16	gi|433593141|ref|YP_007282627.1|	-	2e-10	40.6	0.7	3.1e-10	39.9	0.5	1.3	1	0	0	1	1	1	1	Transposase	DDE	domain
DUF772	PF05598.6	gi|433593141|ref|YP_007282627.1|	-	0.0013	18.6	0.0	0.0047	16.8	0.0	2.0	1	0	0	1	1	1	1	Transposase	domain	(DUF772)
PHO4	PF01384.15	gi|433593142|ref|YP_007282628.1|	-	1e-61	208.4	37.5	7e-61	205.6	24.7	2.0	1	1	0	1	1	1	1	Phosphate	transporter	family
Usp	PF00582.21	gi|433593143|ref|YP_007282629.1|	-	8.6e-11	42.1	1.1	1e-10	41.9	0.7	1.1	1	0	0	1	1	1	1	Universal	stress	protein	family
HK97-gp10_like	PF04883.7	gi|433593143|ref|YP_007282629.1|	-	0.08	13.8	0.1	0.13	13.2	0.1	1.3	1	0	0	1	1	1	0	Bacteriophage	HK97-gp10,	putative	tail-component
Rod_cone_degen	PF15201.1	gi|433593143|ref|YP_007282629.1|	-	0.16	11.8	0.8	0.36	10.7	0.0	1.9	2	0	0	2	2	2	0	Progressive	rod-cone	degeneration
Trypan_PARP	PF05887.6	gi|433593144|ref|YP_007282630.1|	-	2.1	8.1	13.0	3.2	7.5	9.0	1.3	1	0	0	1	1	1	0	Procyclic	acidic	repetitive	protein	(PARP)
Daxx	PF03344.10	gi|433593144|ref|YP_007282630.1|	-	6.2	5.1	11.2	5.7	5.2	7.8	1.1	1	0	0	1	1	1	0	Daxx	Family
CbiA	PF01656.18	gi|433593145|ref|YP_007282631.1|	-	1.9e-25	89.3	0.0	2.7e-25	88.9	0.0	1.1	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_31	PF13614.1	gi|433593145|ref|YP_007282631.1|	-	1.2e-08	35.0	0.0	1.3e-07	31.7	0.0	2.1	1	1	0	1	1	1	1	AAA	domain
MipZ	PF09140.6	gi|433593145|ref|YP_007282631.1|	-	8.9e-08	31.5	0.0	0.00077	18.6	0.1	3.0	3	1	0	3	3	3	2	ATPase	MipZ
YhjQ	PF06564.7	gi|433593145|ref|YP_007282631.1|	-	3e-05	23.4	0.0	4.3e-05	22.9	0.0	1.1	1	0	0	1	1	1	1	YhjQ	protein
ArsA_ATPase	PF02374.10	gi|433593145|ref|YP_007282631.1|	-	0.00016	20.8	0.1	0.0015	17.6	0.1	2.1	2	0	0	2	2	2	1	Anion-transporting	ATPase
AAA_17	PF13207.1	gi|433593145|ref|YP_007282631.1|	-	0.0012	19.6	0.8	0.003	18.3	0.5	1.7	1	1	0	1	1	1	1	AAA	domain
VirC1	PF07015.6	gi|433593145|ref|YP_007282631.1|	-	0.0022	17.1	0.0	0.65	9.0	0.0	2.2	2	0	0	2	2	2	2	VirC1	protein
APS_kinase	PF01583.15	gi|433593145|ref|YP_007282631.1|	-	0.0063	16.1	0.1	0.015	15.0	0.1	1.5	1	0	0	1	1	1	1	Adenylylsulphate	kinase
Fer4_NifH	PF00142.13	gi|433593145|ref|YP_007282631.1|	-	0.007	15.5	0.0	0.34	10.0	0.0	2.3	2	0	0	2	2	2	1	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
AAA_25	PF13481.1	gi|433593145|ref|YP_007282631.1|	-	0.019	14.3	0.2	0.047	13.0	0.2	1.6	1	1	0	1	1	1	0	AAA	domain
AAA_10	PF12846.2	gi|433593145|ref|YP_007282631.1|	-	0.025	14.0	0.1	0.1	11.9	0.0	1.9	2	1	0	2	2	2	0	AAA-like	domain
SRP54	PF00448.17	gi|433593145|ref|YP_007282631.1|	-	0.086	12.2	0.1	3.8	6.9	0.0	2.2	2	0	0	2	2	2	0	SRP54-type	protein,	GTPase	domain
AAA_18	PF13238.1	gi|433593145|ref|YP_007282631.1|	-	0.13	12.6	0.4	0.36	11.1	0.1	1.9	2	1	0	2	2	2	0	AAA	domain
SHOCT	PF09851.4	gi|433593146|ref|YP_007282632.1|	-	4.9e-09	35.3	3.4	6.6e-09	34.9	2.4	1.2	1	0	0	1	1	1	1	Short	C-terminal	domain
DUF1707	PF08044.6	gi|433593146|ref|YP_007282632.1|	-	3.3e-06	26.7	1.8	4.8e-06	26.2	1.3	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1707)
DUF4131	PF13567.1	gi|433593146|ref|YP_007282632.1|	-	0.011	15.1	0.3	0.014	14.8	0.2	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4131)
GvpG	PF05120.7	gi|433593146|ref|YP_007282632.1|	-	0.079	12.7	0.6	0.13	12.0	0.4	1.4	1	0	0	1	1	1	0	Gas	vesicle	protein	G
DUF2244	PF10003.4	gi|433593146|ref|YP_007282632.1|	-	0.12	11.6	5.9	2.1	7.6	0.0	2.1	2	0	0	2	2	2	0	Integral	membrane	protein	(DUF2244)
DUF1469	PF07332.6	gi|433593146|ref|YP_007282632.1|	-	0.13	12.0	8.0	0.17	11.6	5.5	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1469)
ABC2_membrane_4	PF12730.2	gi|433593146|ref|YP_007282632.1|	-	0.19	10.8	6.2	0.23	10.6	4.3	1.1	1	0	0	1	1	1	0	ABC-2	family	transporter	protein
DUF2636	PF11120.3	gi|433593146|ref|YP_007282632.1|	-	0.31	10.5	2.9	0.35	10.4	0.0	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2636)
DUF2627	PF11118.3	gi|433593146|ref|YP_007282632.1|	-	0.42	10.7	5.3	0.6	10.2	3.7	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2627)
Virul_fac_BrkB	PF03631.10	gi|433593146|ref|YP_007282632.1|	-	0.48	9.7	8.1	0.59	9.4	5.6	1.0	1	0	0	1	1	1	0	Virulence	factor	BrkB
PTS_EIIC	PF02378.13	gi|433593146|ref|YP_007282632.1|	-	1.1	8.0	9.5	1.2	7.8	6.6	1.0	1	0	0	1	1	1	0	Phosphotransferase	system,	EIIC
ABC2_membrane_3	PF12698.2	gi|433593146|ref|YP_007282632.1|	-	1.5	7.7	5.5	2.2	7.2	3.8	1.2	1	0	0	1	1	1	0	ABC-2	family	transporter	protein
Ion_trans_2	PF07885.11	gi|433593147|ref|YP_007282633.1|	-	3.5e-05	23.4	13.4	3.5e-05	23.4	9.3	2.2	2	1	0	2	2	2	1	Ion	channel
E1-E2_ATPase	PF00122.15	gi|433593148|ref|YP_007282634.1|	-	7.3e-55	185.5	6.2	1.6e-53	181.1	1.1	2.5	2	0	0	2	2	2	2	E1-E2	ATPase
Hydrolase	PF00702.21	gi|433593148|ref|YP_007282634.1|	-	3.5e-47	161.5	7.1	7.3e-47	160.5	4.9	1.6	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
HAD	PF12710.2	gi|433593148|ref|YP_007282634.1|	-	6.6e-17	62.3	0.1	1.5e-16	61.1	0.0	1.7	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_3	PF08282.7	gi|433593148|ref|YP_007282634.1|	-	1.6e-05	24.6	0.2	0.00026	20.6	0.2	2.3	2	0	0	2	2	2	1	haloacid	dehalogenase-like	hydrolase
adh_short	PF00106.20	gi|433593149|ref|YP_007282635.1|	-	8.1e-34	116.9	1.4	1e-33	116.5	1.0	1.1	1	0	0	1	1	1	1	short	chain	dehydrogenase
KR	PF08659.5	gi|433593149|ref|YP_007282635.1|	-	3.3e-17	62.7	0.6	5e-17	62.1	0.4	1.2	1	0	0	1	1	1	1	KR	domain
adh_short_C2	PF13561.1	gi|433593149|ref|YP_007282635.1|	-	1.9e-09	37.6	0.0	2.7e-09	37.1	0.0	1.1	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
NAD_binding_10	PF13460.1	gi|433593149|ref|YP_007282635.1|	-	0.0055	16.7	1.5	0.0093	15.9	1.0	1.5	1	1	0	1	1	1	1	NADH(P)-binding
Entericidin	PF08085.6	gi|433593149|ref|YP_007282635.1|	-	0.65	9.8	3.4	8.7	6.2	0.3	2.8	2	0	0	2	2	2	0	Entericidin	EcnA/B	family
VKOR	PF07884.9	gi|433593150|ref|YP_007282636.1|	-	3.1e-17	62.7	4.9	3.1e-17	62.7	3.4	2.5	3	2	0	3	3	3	1	Vitamin	K	epoxide	reductase	family
SPW	PF03779.9	gi|433593150|ref|YP_007282636.1|	-	2.4e-07	30.0	42.3	0.0022	17.2	0.3	5.4	5	0	0	5	5	5	4	SPW	repeat
Glyco_hydro_15	PF00723.16	gi|433593151|ref|YP_007282637.1|	-	7.7e-50	169.7	0.0	1.6e-44	152.2	0.0	2.1	1	1	1	2	2	2	2	Glycosyl	hydrolases	family	15
TPR_2	PF07719.12	gi|433593151|ref|YP_007282637.1|	-	0.0074	16.1	0.1	5.8	7.0	0.0	3.0	2	0	0	2	2	2	2	Tetratricopeptide	repeat
TPR_14	PF13428.1	gi|433593151|ref|YP_007282637.1|	-	0.068	13.8	0.1	7.3	7.5	0.0	2.8	2	0	0	2	2	2	0	Tetratricopeptide	repeat
TPR_8	PF13181.1	gi|433593151|ref|YP_007282637.1|	-	0.16	11.8	0.1	16	5.5	0.0	3.1	3	0	0	3	3	3	0	Tetratricopeptide	repeat
TPR_1	PF00515.23	gi|433593151|ref|YP_007282637.1|	-	0.83	9.3	2.4	5.5	6.7	0.0	3.1	5	0	0	5	5	5	0	Tetratricopeptide	repeat
SPW	PF03779.9	gi|433593152|ref|YP_007282638.1|	-	0.0041	16.4	17.3	0.11	11.8	2.2	2.9	2	2	0	2	2	2	2	SPW	repeat
CitMHS	PF03600.11	gi|433593152|ref|YP_007282638.1|	-	0.0061	15.1	0.5	0.0091	14.6	0.4	1.3	1	1	0	1	1	1	1	Citrate	transporter
YhhN	PF07947.9	gi|433593152|ref|YP_007282638.1|	-	0.04	13.2	0.3	0.055	12.8	0.2	1.3	1	0	0	1	1	1	0	YhhN-like	protein
Sarcolipin	PF05366.6	gi|433593152|ref|YP_007282638.1|	-	0.43	10.0	4.9	0.48	9.8	0.3	2.6	3	0	0	3	3	3	0	Sarcolipin
DUF1304	PF06993.7	gi|433593152|ref|YP_007282638.1|	-	1.2	8.8	4.1	1.1	9.0	0.9	2.1	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF1304)
DUF308	PF03729.8	gi|433593152|ref|YP_007282638.1|	-	2.3	8.2	9.8	4.7	7.2	0.4	2.5	2	1	0	2	2	2	0	Short	repeat	of	unknown	function	(DUF308)
TraQ	PF09679.5	gi|433593152|ref|YP_007282638.1|	-	4.3	7.3	6.9	2.9	7.8	0.5	2.1	1	1	1	2	2	2	0	Type-F	conjugative	transfer	system	pilin	chaperone	(TraQ)
DUF326	PF03860.11	gi|433593153|ref|YP_007282639.1|	-	2.8e-07	29.9	47.7	0.0021	17.7	8.4	4.9	3	2	2	5	5	5	4	Domain	of	Unknown	Function	(DUF326)
Choline_transpo	PF04515.7	gi|433593153|ref|YP_007282639.1|	-	0.23	10.1	1.2	0.35	9.5	0.9	1.3	1	0	0	1	1	1	0	Plasma-membrane	choline	transporter
FUSC_2	PF13515.1	gi|433593154|ref|YP_007282640.1|	-	0.36	10.7	8.2	0.58	10.0	5.7	1.4	1	1	0	1	1	1	0	Fusaric	acid	resistance	protein-like
Tic20	PF09685.5	gi|433593154|ref|YP_007282640.1|	-	2.3	8.2	8.9	6.2	6.8	0.1	2.1	1	1	1	2	2	2	0	Tic20-like	protein
VIT1	PF01988.14	gi|433593154|ref|YP_007282640.1|	-	6.9	6.0	8.9	1.6	8.1	3.5	1.7	2	0	0	2	2	2	0	VIT	family
YjgP_YjgQ	PF03739.9	gi|433593154|ref|YP_007282640.1|	-	8.5	5.0	8.2	11	4.6	5.7	1.1	1	0	0	1	1	1	0	Predicted	permease	YjgP/YjgQ	family
P12	PF12669.2	gi|433593154|ref|YP_007282640.1|	-	9.2	6.5	9.7	8.4	6.6	0.1	3.0	3	0	0	3	3	3	0	Virus	attachment	protein	p12	family
z-alpha	PF02295.12	gi|433593155|ref|YP_007282641.1|	-	0.0019	17.9	0.0	0.0087	15.8	0.0	1.8	2	0	0	2	2	2	1	Adenosine	deaminase	z-alpha	domain
HTH_45	PF14947.1	gi|433593155|ref|YP_007282641.1|	-	0.021	14.6	0.1	0.04	13.7	0.1	1.4	1	0	0	1	1	1	0	Winged	helix-turn-helix
MarR_2	PF12802.2	gi|433593155|ref|YP_007282641.1|	-	0.037	13.7	0.0	0.065	12.9	0.0	1.4	1	0	0	1	1	1	0	MarR	family
Mrr_N	PF14338.1	gi|433593155|ref|YP_007282641.1|	-	0.043	13.9	0.1	0.066	13.2	0.0	1.3	1	0	0	1	1	1	0	Mrr	N-terminal	domain
Replic_Relax	PF13814.1	gi|433593155|ref|YP_007282641.1|	-	0.082	12.7	0.0	0.12	12.1	0.0	1.2	1	0	0	1	1	1	0	Replication-relaxation
HTH_12	PF08461.5	gi|433593155|ref|YP_007282641.1|	-	0.088	12.5	0.2	0.14	11.9	0.2	1.3	1	0	0	1	1	1	0	Ribonuclease	R	winged-helix	domain
Rio2_N	PF09202.6	gi|433593155|ref|YP_007282641.1|	-	0.12	12.4	0.0	0.2	11.7	0.0	1.3	1	0	0	1	1	1	0	Rio2,	N-terminal
RRN7	PF11781.3	gi|433593156|ref|YP_007282642.1|	-	9.6	5.8	8.7	1.7	8.1	0.1	2.2	2	0	0	2	2	2	0	RNA	polymerase	I-specific	transcription	initiation	factor	Rrn7
DUF4149	PF13664.1	gi|433593157|ref|YP_007282643.1|	-	0.15	12.1	5.2	0.17	11.9	3.6	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4149)
NfeD	PF01957.13	gi|433593157|ref|YP_007282643.1|	-	0.43	10.7	6.4	0.5	10.4	4.4	1.1	1	0	0	1	1	1	0	NfeD-like	C-terminal,	partner-binding
DUF3311	PF11755.3	gi|433593157|ref|YP_007282643.1|	-	0.81	9.2	3.3	1.4	8.5	0.0	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3311)
PrgI	PF12666.2	gi|433593157|ref|YP_007282643.1|	-	1.2	9.3	5.3	1.5	9.0	3.7	1.1	1	0	0	1	1	1	0	PrgI	family	protein
Phage_integrase	PF00589.17	gi|433593158|ref|YP_007282644.1|	-	2e-16	60.1	0.0	1.9e-15	56.9	0.0	2.1	1	1	0	1	1	1	1	Phage	integrase	family
Phage_int_SAM_1	PF02899.12	gi|433593158|ref|YP_007282644.1|	-	7.4e-09	35.6	0.2	1.9e-08	34.3	0.1	1.7	1	0	0	1	1	1	1	Phage	integrase,	N-terminal	SAM-like	domain
Phage_int_SAM_4	PF13495.1	gi|433593158|ref|YP_007282644.1|	-	6.8e-06	26.3	0.1	1.6e-05	25.1	0.1	1.6	1	0	0	1	1	1	1	Phage	integrase,	N-terminal	SAM-like	domain
HTH_23	PF13384.1	gi|433593159|ref|YP_007282645.1|	-	3.2e-05	23.4	0.0	0.00016	21.1	0.0	2.1	3	0	0	3	3	3	1	Homeodomain-like	domain
HTH_28	PF13518.1	gi|433593159|ref|YP_007282645.1|	-	0.00032	20.6	0.0	0.0015	18.4	0.0	2.0	2	0	0	2	2	2	1	Helix-turn-helix	domain
Fe_dep_repress	PF01325.14	gi|433593159|ref|YP_007282645.1|	-	0.0009	19.1	0.1	0.005	16.7	0.0	2.1	2	0	0	2	2	2	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_1	PF00126.22	gi|433593159|ref|YP_007282645.1|	-	0.002	17.8	0.6	0.0042	16.7	0.1	1.7	2	0	0	2	2	2	1	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
TrmB	PF01978.14	gi|433593159|ref|YP_007282645.1|	-	0.0021	17.7	0.0	0.0039	16.8	0.0	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.2	gi|433593159|ref|YP_007282645.1|	-	0.0027	17.3	0.0	0.0056	16.3	0.0	1.5	1	1	0	1	1	1	1	MarR	family
Rrf2	PF02082.15	gi|433593159|ref|YP_007282645.1|	-	0.0034	17.4	0.0	0.051	13.7	0.0	2.4	3	0	0	3	3	3	1	Transcriptional	regulator
DUF883	PF05957.8	gi|433593159|ref|YP_007282645.1|	-	0.0037	17.6	0.5	0.0066	16.8	0.4	1.4	1	0	0	1	1	1	1	Bacterial	protein	of	unknown	function	(DUF883)
HTH_24	PF13412.1	gi|433593159|ref|YP_007282645.1|	-	0.0051	16.1	0.0	0.0088	15.4	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
GntR	PF00392.16	gi|433593159|ref|YP_007282645.1|	-	0.01	15.2	0.0	0.028	13.8	0.0	1.7	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	gntR	family
HTH_30	PF13556.1	gi|433593159|ref|YP_007282645.1|	-	0.015	14.9	0.1	0.027	14.0	0.0	1.5	1	0	0	1	1	1	0	PucR	C-terminal	helix-turn-helix	domain
DUF2250	PF10007.4	gi|433593159|ref|YP_007282645.1|	-	0.026	14.4	0.0	0.046	13.6	0.0	1.4	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
RPA_C	PF08784.6	gi|433593159|ref|YP_007282645.1|	-	0.03	14.7	0.0	0.051	13.9	0.0	1.3	1	0	0	1	1	1	0	Replication	protein	A	C	terminal
HTH_29	PF13551.1	gi|433593159|ref|YP_007282645.1|	-	0.041	14.0	0.0	0.11	12.7	0.0	1.6	2	0	0	2	2	2	0	Winged	helix-turn	helix
NTP_transf_5	PF14907.1	gi|433593160|ref|YP_007282646.1|	-	9.6e-08	31.6	0.0	1.4e-07	31.1	0.0	1.2	1	0	0	1	1	1	1	Uncharacterised	nucleotidyltransferase
DUF1814	PF08843.6	gi|433593160|ref|YP_007282646.1|	-	2.7e-06	27.3	0.4	1.2e-05	25.2	0.2	1.9	1	1	1	2	2	2	1	Nucleotidyl	transferase	of	unknown	function	(DUF1814)
Propep_M14	PF02244.11	gi|433593160|ref|YP_007282646.1|	-	0.00053	19.5	0.0	0.0018	17.9	0.0	1.9	2	0	0	2	2	2	1	Carboxypeptidase	activation	peptide
Rsa3	PF14615.1	gi|433593161|ref|YP_007282647.1|	-	0.13	11.5	0.2	0.28	10.5	0.1	1.5	1	0	0	1	1	1	0	Ribosome-assembly	protein	3
TRAM	PF01938.15	gi|433593162|ref|YP_007282648.1|	-	4.9e-16	58.2	2.3	4.9e-16	58.2	1.6	1.5	2	0	0	2	2	2	1	TRAM	domain
UvrD-helicase	PF00580.16	gi|433593163|ref|YP_007282649.1|	-	1.1e-51	176.0	0.1	3.8e-51	174.2	0.0	1.9	2	0	0	2	2	2	1	UvrD/REP	helicase	N-terminal	domain
UvrD_C	PF13361.1	gi|433593163|ref|YP_007282649.1|	-	2.6e-35	122.5	0.0	3e-20	72.9	0.0	2.3	1	1	0	2	2	2	2	UvrD-like	helicase	C-terminal	domain
AAA_19	PF13245.1	gi|433593163|ref|YP_007282649.1|	-	9.3e-15	54.1	0.8	4.8e-14	51.8	0.0	2.6	4	0	0	4	4	4	1	Part	of	AAA	domain
PDDEXK_1	PF12705.2	gi|433593163|ref|YP_007282649.1|	-	2.1e-11	43.7	3.9	2.2e-11	43.6	0.4	2.7	3	1	0	3	3	3	1	PD-(D/E)XK	nuclease	superfamily
UvrD_C_2	PF13538.1	gi|433593163|ref|YP_007282649.1|	-	7.9e-09	35.5	0.1	0.0045	17.1	0.0	2.9	2	0	0	2	2	2	2	UvrD-like	helicase	C-terminal	domain
AAA_30	PF13604.1	gi|433593163|ref|YP_007282649.1|	-	2e-05	24.2	0.0	4.2e-05	23.2	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
AAA_12	PF13087.1	gi|433593163|ref|YP_007282649.1|	-	0.0002	20.8	0.0	0.031	13.6	0.0	2.4	2	0	0	2	2	2	2	AAA	domain
PhoH	PF02562.11	gi|433593163|ref|YP_007282649.1|	-	0.035	13.3	0.0	3.4	6.8	0.0	2.3	2	0	0	2	2	2	0	PhoH-like	protein
PDDEXK_1	PF12705.2	gi|433593164|ref|YP_007282650.1|	-	3.7e-18	65.8	1.6	1.3e-17	64.0	1.1	1.9	1	1	0	1	1	1	1	PD-(D/E)XK	nuclease	superfamily
PilZ	PF07238.9	gi|433593166|ref|YP_007282652.1|	-	0.0077	16.2	0.0	0.092	12.7	0.0	2.0	1	1	0	1	1	1	1	PilZ	domain
Methyltransf_26	PF13659.1	gi|433593167|ref|YP_007282653.1|	-	8.9e-13	48.3	0.0	2e-12	47.1	0.0	1.6	1	0	0	1	1	1	1	Methyltransferase	domain
N6_Mtase	PF02384.11	gi|433593167|ref|YP_007282653.1|	-	3e-11	42.9	0.0	9.3e-11	41.3	0.0	1.8	1	1	0	1	1	1	1	N-6	DNA	Methylase
Eco57I	PF07669.6	gi|433593167|ref|YP_007282653.1|	-	9.5e-07	29.1	0.0	2.7e-06	27.6	0.0	1.7	1	0	0	1	1	1	1	Eco57I	restriction-modification	methylase
MTS	PF05175.9	gi|433593167|ref|YP_007282653.1|	-	1.4e-05	24.5	0.0	0.00088	18.6	0.0	2.3	2	0	0	2	2	2	1	Methyltransferase	small	domain
TaqI_C	PF12950.2	gi|433593167|ref|YP_007282653.1|	-	1.7e-05	24.5	0.0	4.5e-05	23.1	0.0	1.7	1	1	0	1	1	1	1	TaqI-like	C-terminal	specificity	domain
UPF0020	PF01170.13	gi|433593167|ref|YP_007282653.1|	-	0.024	14.2	0.0	0.072	12.6	0.0	1.8	1	1	0	1	1	1	0	Putative	RNA	methylase	family	UPF0020
DUF35_N	PF12172.3	gi|433593167|ref|YP_007282653.1|	-	0.085	12.7	0.4	0.22	11.4	0.3	1.6	1	0	0	1	1	1	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
Ribosomal_S27e	PF01667.12	gi|433593167|ref|YP_007282653.1|	-	0.38	10.3	0.5	0.7	9.4	0.4	1.4	1	0	0	1	1	1	0	Ribosomal	protein	S27
zf-ribbon_3	PF13248.1	gi|433593167|ref|YP_007282653.1|	-	3.2	7.0	4.9	1.4	8.1	1.4	1.9	2	0	0	2	2	2	0	zinc-ribbon	domain
DDE_Tnp_1	PF01609.16	gi|433593169|ref|YP_007282655.1|	-	9.4e-11	41.6	2.7	1.7e-10	40.8	1.9	1.4	1	0	0	1	1	1	1	Transposase	DDE	domain
DUF772	PF05598.6	gi|433593169|ref|YP_007282655.1|	-	0.021	14.7	0.1	0.061	13.2	0.1	1.8	1	0	0	1	1	1	0	Transposase	domain	(DUF772)
DDE_Tnp_1_assoc	PF13808.1	gi|433593169|ref|YP_007282655.1|	-	0.09	12.4	0.2	0.18	11.5	0.1	1.6	1	0	0	1	1	1	0	DDE_Tnp_1-associated
AAA_22	PF13401.1	gi|433593170|ref|YP_007282656.1|	-	2.2e-09	37.5	0.0	1.6e-08	34.7	0.0	2.1	2	0	0	2	2	2	1	AAA	domain
AAA_16	PF13191.1	gi|433593170|ref|YP_007282656.1|	-	2.7e-09	37.2	1.2	9.2e-08	32.2	0.1	2.8	1	1	1	2	2	2	1	AAA	ATPase	domain
AAA_18	PF13238.1	gi|433593170|ref|YP_007282656.1|	-	4.7e-06	26.9	0.3	2.4e-05	24.6	0.0	2.3	1	1	1	2	2	2	1	AAA	domain
Penicillinase_R	PF03965.11	gi|433593170|ref|YP_007282656.1|	-	2.9e-05	24.1	0.0	6.9e-05	22.9	0.0	1.7	1	0	0	1	1	1	1	Penicillinase	repressor
AAA_17	PF13207.1	gi|433593170|ref|YP_007282656.1|	-	0.0001	23.1	3.5	0.00063	20.5	0.0	2.4	1	1	1	2	2	2	1	AAA	domain
RuvB_N	PF05496.7	gi|433593170|ref|YP_007282656.1|	-	0.00017	20.7	0.0	0.0013	17.7	0.0	2.1	1	1	0	1	1	1	1	Holliday	junction	DNA	helicase	ruvB	N-terminus
AAA_5	PF07728.9	gi|433593170|ref|YP_007282656.1|	-	0.00018	21.2	0.0	0.00081	19.1	0.0	2.1	1	1	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
NTPase_1	PF03266.10	gi|433593170|ref|YP_007282656.1|	-	0.0004	20.1	0.2	0.015	15.0	0.0	2.8	2	1	0	3	3	3	1	NTPase
NB-ARC	PF00931.17	gi|433593170|ref|YP_007282656.1|	-	0.00072	18.5	0.0	0.0011	17.9	0.0	1.3	1	0	0	1	1	1	1	NB-ARC	domain
AAA	PF00004.24	gi|433593170|ref|YP_007282656.1|	-	0.00076	19.6	0.0	0.01	16.0	0.0	2.7	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
DUF2075	PF09848.4	gi|433593170|ref|YP_007282656.1|	-	0.00096	18.2	0.0	0.0014	17.7	0.0	1.3	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2075)
Bac_DnaA	PF00308.13	gi|433593170|ref|YP_007282656.1|	-	0.0018	17.9	0.0	0.0096	15.5	0.0	2.2	1	1	0	1	1	1	1	Bacterial	dnaA	protein
AAA_14	PF13173.1	gi|433593170|ref|YP_007282656.1|	-	0.0021	17.9	0.0	0.0051	16.7	0.0	1.6	1	1	0	1	1	1	1	AAA	domain
Cdc6_C	PF09079.6	gi|433593170|ref|YP_007282656.1|	-	0.004	16.8	0.2	0.016	14.8	0.1	2.1	1	1	0	1	1	1	1	CDC6,	C	terminal
Arch_ATPase	PF01637.13	gi|433593170|ref|YP_007282656.1|	-	0.0052	16.5	0.0	0.073	12.7	0.0	2.6	1	1	0	2	2	2	1	Archaeal	ATPase
DUF2791	PF10923.3	gi|433593170|ref|YP_007282656.1|	-	0.0087	14.7	0.0	0.014	14.0	0.0	1.3	1	0	0	1	1	1	1	P-loop	Domain	of	unknown	function	(DUF2791)
AAA_33	PF13671.1	gi|433593170|ref|YP_007282656.1|	-	0.011	15.6	1.1	1.4	8.8	0.0	3.0	2	2	1	3	3	3	0	AAA	domain
RNA_helicase	PF00910.17	gi|433593170|ref|YP_007282656.1|	-	0.016	15.3	0.0	0.046	13.8	0.0	1.8	1	1	1	2	2	1	0	RNA	helicase
DUF4194	PF13835.1	gi|433593170|ref|YP_007282656.1|	-	0.019	14.4	0.0	0.043	13.2	0.0	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4194)
PRK	PF00485.13	gi|433593170|ref|YP_007282656.1|	-	0.019	14.5	0.0	0.048	13.2	0.0	1.7	1	1	0	1	1	1	0	Phosphoribulokinase	/	Uridine	kinase	family
HTH_20	PF12840.2	gi|433593170|ref|YP_007282656.1|	-	0.023	14.4	0.0	0.05	13.4	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain
NACHT	PF05729.7	gi|433593170|ref|YP_007282656.1|	-	0.025	14.2	0.0	0.054	13.1	0.0	1.6	2	0	0	2	2	1	0	NACHT	domain
DUF258	PF03193.11	gi|433593170|ref|YP_007282656.1|	-	0.031	13.4	0.0	0.05	12.7	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
AAA_30	PF13604.1	gi|433593170|ref|YP_007282656.1|	-	0.066	12.7	0.7	0.3	10.6	0.0	2.4	2	1	0	2	2	2	0	AAA	domain
AAA_19	PF13245.1	gi|433593170|ref|YP_007282656.1|	-	0.11	12.2	0.0	0.31	10.7	0.0	1.7	1	0	0	1	1	1	0	Part	of	AAA	domain
DUF159	PF02586.9	gi|433593171|ref|YP_007282657.1|	-	5.1e-61	205.8	0.0	5.7e-61	205.6	0.0	1.0	1	0	0	1	1	1	1	Uncharacterised	ACR,	COG2135
VP9	PF09625.5	gi|433593172|ref|YP_007282658.1|	-	0.068	12.9	0.2	0.17	11.7	0.0	1.7	2	0	0	2	2	2	0	VP9	protein
MethyTransf_Reg	PF10119.4	gi|433593172|ref|YP_007282658.1|	-	0.074	13.5	0.9	0.51	10.8	0.1	2.2	2	0	0	2	2	2	0	Predicted	methyltransferase	regulatory	domain
HXXSHH	PF07586.6	gi|433593175|ref|YP_007282661.1|	-	0.073	11.9	0.6	2	7.2	0.1	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1552)
CorA	PF01544.13	gi|433593175|ref|YP_007282661.1|	-	0.098	11.6	0.7	0.11	11.5	0.5	1.0	1	0	0	1	1	1	0	CorA-like	Mg2+	transporter	protein
MutL_C	PF08676.6	gi|433593175|ref|YP_007282661.1|	-	0.12	11.9	0.1	0.15	11.6	0.1	1.2	1	0	0	1	1	1	0	MutL	C	terminal	dimerisation	domain
PilJ	PF13675.1	gi|433593175|ref|YP_007282661.1|	-	0.14	12.5	2.8	2.7	8.3	0.1	2.0	1	1	1	2	2	2	0	Type	IV	pili	methyl-accepting	chemotaxis	transducer	N-term
Spectrin	PF00435.16	gi|433593175|ref|YP_007282661.1|	-	0.24	11.6	1.8	5.5	7.3	0.0	2.3	2	1	0	2	2	2	0	Spectrin	repeat
Cdc6_C	PF09079.6	gi|433593176|ref|YP_007282662.1|	-	9.6e-19	66.8	0.0	2.1e-18	65.8	0.0	1.6	1	0	0	1	1	1	1	CDC6,	C	terminal
AAA_16	PF13191.1	gi|433593176|ref|YP_007282662.1|	-	8.9e-13	48.6	0.6	9.4e-12	45.2	0.0	2.5	2	1	0	2	2	2	1	AAA	ATPase	domain
AAA_22	PF13401.1	gi|433593176|ref|YP_007282662.1|	-	1.6e-12	47.7	0.1	4.3e-12	46.3	0.0	1.7	2	0	0	2	2	2	1	AAA	domain
AAA	PF00004.24	gi|433593176|ref|YP_007282662.1|	-	2.1e-06	27.9	0.3	7.7e-06	26.1	0.2	2.0	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
DUF815	PF05673.8	gi|433593176|ref|YP_007282662.1|	-	9.7e-06	24.6	0.0	1.9e-05	23.7	0.0	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF815)
NACHT	PF05729.7	gi|433593176|ref|YP_007282662.1|	-	4.1e-05	23.3	0.0	6.7e-05	22.5	0.0	1.3	1	0	0	1	1	1	1	NACHT	domain
Sigma54_activat	PF00158.21	gi|433593176|ref|YP_007282662.1|	-	7.3e-05	22.3	0.3	0.0002	20.8	0.0	1.8	2	0	0	2	2	2	1	Sigma-54	interaction	domain
Arch_ATPase	PF01637.13	gi|433593176|ref|YP_007282662.1|	-	0.00027	20.7	0.0	0.00063	19.5	0.0	1.7	2	1	0	2	2	2	1	Archaeal	ATPase
Sigma54_activ_2	PF14532.1	gi|433593176|ref|YP_007282662.1|	-	0.0005	20.1	0.0	0.0011	19.0	0.0	1.6	1	0	0	1	1	1	1	Sigma-54	interaction	domain
AAA_5	PF07728.9	gi|433593176|ref|YP_007282662.1|	-	0.0006	19.5	0.1	0.0029	17.3	0.0	2.1	2	1	0	2	2	2	1	AAA	domain	(dynein-related	subfamily)
NB-ARC	PF00931.17	gi|433593176|ref|YP_007282662.1|	-	0.00078	18.3	0.1	0.0011	17.8	0.0	1.2	1	0	0	1	1	1	1	NB-ARC	domain
PhoH	PF02562.11	gi|433593176|ref|YP_007282662.1|	-	0.0079	15.4	0.5	3.3	6.8	0.1	2.5	2	0	0	2	2	2	2	PhoH-like	protein
RNA_helicase	PF00910.17	gi|433593176|ref|YP_007282662.1|	-	0.013	15.6	0.0	0.043	14.0	0.0	2.0	2	0	0	2	2	2	0	RNA	helicase
AAA_17	PF13207.1	gi|433593176|ref|YP_007282662.1|	-	0.017	15.9	0.4	0.081	13.7	0.2	2.6	1	1	0	1	1	1	0	AAA	domain
T2SE	PF00437.15	gi|433593176|ref|YP_007282662.1|	-	0.033	13.0	0.0	0.076	11.9	0.0	1.6	2	0	0	2	2	2	0	Type	II/IV	secretion	system	protein
ABC_tran	PF00005.22	gi|433593176|ref|YP_007282662.1|	-	0.039	14.2	0.4	0.11	12.8	0.3	2.0	1	1	0	1	1	1	0	ABC	transporter
AAA_25	PF13481.1	gi|433593176|ref|YP_007282662.1|	-	0.09	12.1	0.0	1.7	8.0	0.0	2.4	2	0	0	2	2	2	0	AAA	domain
DEAD	PF00270.24	gi|433593176|ref|YP_007282662.1|	-	0.43	10.0	2.0	11	5.4	1.3	2.4	1	1	0	1	1	1	0	DEAD/DEAH	box	helicase
CSTF2_hinge	PF14327.1	gi|433593177|ref|YP_007282663.1|	-	0.13	12.3	0.0	0.2	11.7	0.0	1.3	1	0	0	1	1	1	0	Hinge	domain	of	cleavage	stimulation	factor	subunit	2
MarR_2	PF12802.2	gi|433593178|ref|YP_007282664.1|	-	9.7e-16	57.1	3.0	1.2e-08	34.5	0.5	2.9	3	0	0	3	3	3	2	MarR	family
TrmB	PF01978.14	gi|433593178|ref|YP_007282664.1|	-	4.3e-09	35.9	0.2	0.0025	17.5	0.0	2.6	2	0	0	2	2	2	2	Sugar-specific	transcriptional	regulator	TrmB
MarR	PF01047.17	gi|433593178|ref|YP_007282664.1|	-	6.9e-09	35.2	0.0	0.0023	17.5	0.0	2.5	2	0	0	2	2	2	2	MarR	family
HTH_24	PF13412.1	gi|433593178|ref|YP_007282664.1|	-	3.6e-08	32.6	0.1	0.0036	16.6	0.0	2.4	2	0	0	2	2	2	2	Winged	helix-turn-helix	DNA-binding
HTH_27	PF13463.1	gi|433593178|ref|YP_007282664.1|	-	3.9e-08	33.4	0.8	1e-05	25.7	0.2	2.6	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
HTH_23	PF13384.1	gi|433593178|ref|YP_007282664.1|	-	8.6e-08	31.6	0.1	0.0048	16.5	0.0	2.7	2	0	0	2	2	2	2	Homeodomain-like	domain
Rrf2	PF02082.15	gi|433593178|ref|YP_007282664.1|	-	1.5e-07	31.4	0.0	0.0063	16.6	0.0	2.6	2	0	0	2	2	2	2	Transcriptional	regulator
HTH_29	PF13551.1	gi|433593178|ref|YP_007282664.1|	-	1.7e-07	31.3	0.3	0.019	15.1	0.0	2.4	1	1	1	2	2	2	2	Winged	helix-turn	helix
HTH_38	PF13936.1	gi|433593178|ref|YP_007282664.1|	-	3.1e-06	26.6	0.0	0.09	12.3	0.0	2.7	2	0	0	2	2	2	2	Helix-turn-helix	domain
HTH_20	PF12840.2	gi|433593178|ref|YP_007282664.1|	-	3.4e-06	26.7	0.3	0.013	15.3	0.1	2.6	2	0	0	2	2	2	2	Helix-turn-helix	domain
HTH_IclR	PF09339.5	gi|433593178|ref|YP_007282664.1|	-	5.7e-06	25.8	0.0	0.079	12.5	0.0	2.7	2	0	0	2	2	2	2	IclR	helix-turn-helix	domain
HTH_28	PF13518.1	gi|433593178|ref|YP_007282664.1|	-	0.00012	22.0	0.1	0.09	12.8	0.0	2.8	2	0	0	2	2	2	1	Helix-turn-helix	domain
Penicillinase_R	PF03965.11	gi|433593178|ref|YP_007282664.1|	-	0.00068	19.7	0.0	1.3	9.1	0.0	2.4	1	1	1	2	2	2	2	Penicillinase	repressor
GntR	PF00392.16	gi|433593178|ref|YP_007282664.1|	-	0.00076	18.8	0.0	0.66	9.4	0.0	2.9	3	0	0	3	3	3	1	Bacterial	regulatory	proteins,	gntR	family
HTH_5	PF01022.15	gi|433593178|ref|YP_007282664.1|	-	0.0011	18.5	0.0	0.35	10.5	0.0	2.7	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
HTH_Crp_2	PF13545.1	gi|433593178|ref|YP_007282664.1|	-	0.0015	18.2	0.4	1.1	9.0	0.0	2.7	3	0	0	3	3	2	1	Crp-like	helix-turn-helix	domain
HTH_41	PF14502.1	gi|433593178|ref|YP_007282664.1|	-	0.0022	17.5	0.0	0.018	14.6	0.0	2.3	2	0	0	2	2	2	1	Helix-turn-helix	domain
GerE	PF00196.14	gi|433593178|ref|YP_007282664.1|	-	0.0048	16.1	0.0	2.5	7.4	0.0	2.3	2	0	0	2	2	2	2	Bacterial	regulatory	proteins,	luxR	family
Crp	PF00325.15	gi|433593178|ref|YP_007282664.1|	-	0.0061	16.0	0.8	0.045	13.2	0.2	2.3	2	0	0	2	2	2	1	Bacterial	regulatory	proteins,	crp	family
HTH_Tnp_Tc3_1	PF11427.3	gi|433593178|ref|YP_007282664.1|	-	0.011	15.3	0.3	11	5.7	0.0	3.2	3	0	0	3	3	3	0	Tc3	transposase
LZ_Tnp_IS481	PF13011.1	gi|433593178|ref|YP_007282664.1|	-	0.013	15.7	0.0	0.029	14.7	0.0	1.5	1	0	0	1	1	1	0	leucine-zipper	of	insertion	element	IS481
RPA_C	PF08784.6	gi|433593178|ref|YP_007282664.1|	-	0.018	15.4	0.0	0.049	14.0	0.0	1.7	2	0	0	2	2	1	0	Replication	protein	A	C	terminal
HTH_36	PF13730.1	gi|433593178|ref|YP_007282664.1|	-	0.045	13.8	0.1	1.4	9.0	0.0	2.3	2	0	0	2	2	2	0	Helix-turn-helix	domain
Phage_rep_org_N	PF09681.5	gi|433593178|ref|YP_007282664.1|	-	0.062	12.8	0.0	8.5	5.9	0.0	2.4	2	0	0	2	2	2	0	N-terminal	phage	replisome	organiser	(Phage_rep_org_N)
UPF0122	PF04297.9	gi|433593178|ref|YP_007282664.1|	-	0.083	12.9	0.0	0.19	11.7	0.0	1.6	1	0	0	1	1	1	0	Putative	helix-turn-helix	protein,	YlxM	/	p13	like
HTH_11	PF08279.7	gi|433593178|ref|YP_007282664.1|	-	0.1	12.2	0.2	11	5.7	0.0	3.1	3	0	0	3	3	3	0	HTH	domain
PaaX	PF07848.7	gi|433593178|ref|YP_007282664.1|	-	0.11	12.5	0.0	0.34	10.9	0.0	1.8	1	0	0	1	1	1	0	PaaX-like	protein
AAA_14	PF13173.1	gi|433593179|ref|YP_007282665.1|	-	1.2e-07	31.6	0.1	5.3e-07	29.5	0.0	2.1	3	0	0	3	3	3	1	AAA	domain
AAA_25	PF13481.1	gi|433593179|ref|YP_007282665.1|	-	1.2e-05	24.7	0.0	2.7e-05	23.6	0.0	1.6	1	0	0	1	1	1	1	AAA	domain
RNA_helicase	PF00910.17	gi|433593179|ref|YP_007282665.1|	-	0.0001	22.4	0.1	0.00072	19.7	0.0	2.4	2	1	0	2	2	2	1	RNA	helicase
AAA_22	PF13401.1	gi|433593179|ref|YP_007282665.1|	-	0.00017	21.7	0.1	0.0011	19.1	0.1	2.3	1	1	0	1	1	1	1	AAA	domain
Arch_ATPase	PF01637.13	gi|433593179|ref|YP_007282665.1|	-	0.0014	18.3	0.0	0.0024	17.5	0.0	1.4	1	0	0	1	1	1	1	Archaeal	ATPase
AAA_16	PF13191.1	gi|433593179|ref|YP_007282665.1|	-	0.0043	17.0	0.0	0.014	15.4	0.0	1.9	1	1	0	1	1	1	1	AAA	ATPase	domain
HTH_23	PF13384.1	gi|433593179|ref|YP_007282665.1|	-	0.011	15.3	0.0	0.04	13.5	0.0	2.0	1	0	0	1	1	1	0	Homeodomain-like	domain
DUF3322	PF11795.3	gi|433593179|ref|YP_007282665.1|	-	0.014	15.0	0.2	0.39	10.3	0.1	2.4	2	0	0	2	2	2	0	Uncharacterized	protein	conserved	in	bacteria	N-term	(DUF3322)
NACHT	PF05729.7	gi|433593179|ref|YP_007282665.1|	-	0.015	15.0	0.1	0.031	13.9	0.1	1.5	1	0	0	1	1	1	0	NACHT	domain
AAA_24	PF13479.1	gi|433593179|ref|YP_007282665.1|	-	0.021	14.4	0.0	0.037	13.5	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
IstB_IS21	PF01695.12	gi|433593179|ref|YP_007282665.1|	-	0.022	14.1	0.1	0.44	9.9	0.0	2.2	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
AAA	PF00004.24	gi|433593179|ref|YP_007282665.1|	-	0.027	14.6	0.0	0.062	13.4	0.0	1.6	1	0	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_23	PF13476.1	gi|433593179|ref|YP_007282665.1|	-	0.046	14.0	0.0	0.09	13.0	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
Sigma70_r4_2	PF08281.7	gi|433593179|ref|YP_007282665.1|	-	0.05	13.0	0.0	0.38	10.2	0.0	2.4	2	0	0	2	2	2	0	Sigma-70,	region	4
NB-ARC	PF00931.17	gi|433593179|ref|YP_007282665.1|	-	0.053	12.3	0.0	0.091	11.6	0.0	1.3	1	0	0	1	1	1	0	NB-ARC	domain
HTH_28	PF13518.1	gi|433593179|ref|YP_007282665.1|	-	0.063	13.2	0.2	0.17	11.8	0.1	1.9	1	0	0	1	1	1	0	Helix-turn-helix	domain
ABC_tran	PF00005.22	gi|433593179|ref|YP_007282665.1|	-	0.15	12.3	0.0	0.3	11.3	0.0	1.5	1	0	0	1	1	1	0	ABC	transporter
MMR_HSR1	PF01926.18	gi|433593179|ref|YP_007282665.1|	-	0.16	11.9	0.0	0.33	10.8	0.0	1.5	1	0	0	1	1	1	0	50S	ribosome-binding	GTPase
Lactamase_B_2	PF12706.2	gi|433593180|ref|YP_007282666.1|	-	4.5e-12	45.9	0.3	1.3e-11	44.4	0.2	1.7	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B	PF00753.22	gi|433593180|ref|YP_007282666.1|	-	1.9e-10	40.7	4.1	6.3e-10	39.0	2.8	1.9	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
PSK_trans_fac	PF07704.6	gi|433593180|ref|YP_007282666.1|	-	1.3	9.7	6.1	0.25	12.0	0.3	2.8	3	0	0	3	3	3	0	Rv0623-like	transcription	factor
Piwi	PF02171.12	gi|433593181|ref|YP_007282667.1|	-	1.2e-12	47.4	0.0	2.6e-09	36.5	0.0	2.3	2	0	0	2	2	2	2	Piwi	domain
PLDc_2	PF13091.1	gi|433593182|ref|YP_007282668.1|	-	4.4e-06	26.4	0.0	9.8e-06	25.3	0.0	1.6	1	0	0	1	1	1	1	PLD-like	domain
DUF3471	PF11954.3	gi|433593182|ref|YP_007282668.1|	-	0.083	12.7	0.7	1.2	9.0	0.0	2.8	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF3471)
MatK_N	PF01824.13	gi|433593182|ref|YP_007282668.1|	-	0.2	10.7	0.0	15	4.5	0.0	2.1	2	0	0	2	2	2	0	MatK/TrnK	amino	terminal	region
Auxin_inducible	PF02519.9	gi|433593184|ref|YP_007282670.1|	-	0.058	13.4	0.0	14	5.8	0.0	2.4	2	0	0	2	2	2	0	Auxin	responsive	protein
ResIII	PF04851.10	gi|433593185|ref|YP_007282671.1|	-	4.3e-20	72.3	0.0	2.4e-19	69.8	0.0	2.2	2	0	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
DEAD	PF00270.24	gi|433593185|ref|YP_007282671.1|	-	1.2e-10	41.1	0.0	2.3e-10	40.1	0.0	1.4	1	0	0	1	1	1	1	DEAD/DEAH	box	helicase
Helicase_C	PF00271.26	gi|433593185|ref|YP_007282671.1|	-	1.5e-07	31.1	0.0	3.6e-07	29.9	0.0	1.7	1	0	0	1	1	1	1	Helicase	conserved	C-terminal	domain
SNF2_N	PF00176.18	gi|433593185|ref|YP_007282671.1|	-	2.7e-06	26.4	0.0	1.1e-05	24.3	0.0	2.0	1	1	0	1	1	1	1	SNF2	family	N-terminal	domain
DUF955	PF06114.8	gi|433593186|ref|YP_007282672.1|	-	0.00017	21.3	0.1	0.00028	20.5	0.0	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF955)
SprT-like	PF10263.4	gi|433593186|ref|YP_007282672.1|	-	0.016	14.8	3.4	0.068	12.8	1.9	2.2	1	1	1	2	2	2	0	SprT-like	family
Peptidase_MA_2	PF13485.1	gi|433593186|ref|YP_007282672.1|	-	0.022	14.8	0.0	0.049	13.6	0.0	1.6	1	0	0	1	1	1	0	Peptidase	MA	superfamily
DUF2268	PF10026.4	gi|433593186|ref|YP_007282672.1|	-	0.039	13.3	0.0	0.073	12.4	0.0	1.4	1	0	0	1	1	1	0	Predicted	Zn-dependent	protease	(DUF2268)
ACP53EA	PF06313.6	gi|433593188|ref|YP_007282674.1|	-	0.065	13.1	0.0	0.076	12.9	0.0	1.2	1	0	0	1	1	1	0	Drosophila	ACP53EA	protein
DUF993	PF06187.6	gi|433593189|ref|YP_007282675.1|	-	0.0023	16.5	0.1	0.0034	15.9	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF993)
YqhG	PF11079.3	gi|433593189|ref|YP_007282675.1|	-	0.063	12.0	0.3	0.094	11.5	0.2	1.2	1	0	0	1	1	1	0	Bacterial	protein	YqhG	of	unknown	function
Pentapeptide	PF00805.17	gi|433593191|ref|YP_007282677.1|	-	8.5e-77	251.5	78.6	4e-11	41.8	2.4	11.6	5	4	5	11	11	11	11	Pentapeptide	repeats	(8	copies)
Pentapeptide_4	PF13599.1	gi|433593191|ref|YP_007282677.1|	-	3.5e-57	190.1	9.8	1.5e-11	43.8	0.5	6.5	1	1	4	6	6	6	6	Pentapeptide	repeats	(9	copies)
Pentapeptide_3	PF13576.1	gi|433593191|ref|YP_007282677.1|	-	1e-45	153.3	23.3	3.7e-06	26.7	0.0	10.5	4	3	6	10	10	10	10	Pentapeptide	repeats	(9	copies)
ExoD	PF06055.7	gi|433593191|ref|YP_007282677.1|	-	0.0027	16.8	0.1	0.0047	16.0	0.0	1.3	1	0	0	1	1	1	1	Exopolysaccharide	synthesis,	ExoD
OprD	PF03573.8	gi|433593191|ref|YP_007282677.1|	-	0.0072	15.1	1.3	0.47	9.1	0.0	3.4	2	1	1	4	4	4	1	outer	membrane	porin,	OprD	family
Methyltransf_26	PF13659.1	gi|433593192|ref|YP_007282678.1|	-	4.3e-06	26.7	0.6	0.00018	21.5	0.4	2.6	1	1	0	1	1	1	1	Methyltransferase	domain
N6_N4_Mtase	PF01555.13	gi|433593192|ref|YP_007282678.1|	-	0.001	18.6	0.0	0.56	9.6	0.0	2.3	2	0	0	2	2	2	2	DNA	methylase
UPF0020	PF01170.13	gi|433593192|ref|YP_007282678.1|	-	0.026	14.1	0.0	4.6	6.7	0.0	2.3	2	0	0	2	2	2	0	Putative	RNA	methylase	family	UPF0020
IBR	PF01485.16	gi|433593192|ref|YP_007282678.1|	-	1.7	8.5	12.6	0.12	12.2	4.5	2.2	2	1	1	3	3	3	0	IBR	domain
Mrr_cat	PF04471.7	gi|433593193|ref|YP_007282679.1|	-	2.8e-28	98.0	0.0	5e-28	97.2	0.0	1.4	1	0	0	1	1	1	1	Restriction	endonuclease
Zn_Tnp_IS1595	PF12760.2	gi|433593193|ref|YP_007282679.1|	-	0.029	14.1	5.8	0.45	10.3	0.1	3.4	2	1	1	3	3	3	0	Transposase	zinc-ribbon	domain
Siva	PF05458.7	gi|433593193|ref|YP_007282679.1|	-	0.18	11.3	1.9	0.27	10.7	1.3	1.3	1	0	0	1	1	1	0	Cd27	binding	protein	(Siva)
DZR	PF12773.2	gi|433593193|ref|YP_007282679.1|	-	1.8	8.4	7.9	6.5	6.6	5.5	1.8	1	1	0	1	1	1	0	Double	zinc	ribbon
SNN_transmemb	PF09049.5	gi|433593193|ref|YP_007282679.1|	-	3.3	7.4	8.8	6.7	6.4	6.1	1.5	1	0	0	1	1	1	0	Stannin	transmembrane
DUF164	PF02591.10	gi|433593193|ref|YP_007282679.1|	-	3.7	7.4	6.1	6.3	6.7	0.1	3.3	2	1	1	3	3	3	0	Putative	zinc	ribbon	domain
zf-RING_5	PF14634.1	gi|433593193|ref|YP_007282679.1|	-	4	7.2	7.7	20	4.9	4.8	2.2	2	0	0	2	2	2	0	zinc-RING	finger	domain
Abhydrolase_6	PF12697.2	gi|433593195|ref|YP_007282681.1|	-	2.1e-35	122.6	2.1	3e-35	122.1	1.5	1.2	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
Abhydrolase_1	PF00561.15	gi|433593195|ref|YP_007282681.1|	-	2.5e-24	86.1	0.1	4.9e-24	85.1	0.0	1.5	2	0	0	2	2	2	1	alpha/beta	hydrolase	fold
Abhydrolase_5	PF12695.2	gi|433593195|ref|YP_007282681.1|	-	7.1e-16	58.2	0.0	2e-15	56.7	0.0	1.8	1	1	0	1	1	1	1	Alpha/beta	hydrolase	family
DLH	PF01738.13	gi|433593195|ref|YP_007282681.1|	-	1.7e-05	24.2	0.0	0.067	12.4	0.0	2.3	2	0	0	2	2	2	2	Dienelactone	hydrolase	family
Hydrolase_4	PF12146.3	gi|433593195|ref|YP_007282681.1|	-	0.0054	16.5	0.1	0.011	15.6	0.1	1.5	1	0	0	1	1	1	1	Putative	lysophospholipase
Esterase	PF00756.15	gi|433593195|ref|YP_007282681.1|	-	0.067	12.6	0.0	0.12	11.7	0.0	1.5	1	0	0	1	1	1	0	Putative	esterase
HTH_10	PF04967.7	gi|433593196|ref|YP_007282682.1|	-	3.3e-18	65.0	0.0	5.4e-18	64.3	0.0	1.4	1	0	0	1	1	1	1	HTH	DNA	binding	domain
HTH_24	PF13412.1	gi|433593196|ref|YP_007282682.1|	-	2.5e-05	23.5	0.0	4.5e-05	22.7	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_5	PF01022.15	gi|433593196|ref|YP_007282682.1|	-	0.0003	20.3	0.2	0.00091	18.8	0.0	1.9	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
Sigma70_r4_2	PF08281.7	gi|433593196|ref|YP_007282682.1|	-	0.002	17.5	0.0	0.0068	15.8	0.0	1.9	2	0	0	2	2	2	1	Sigma-70,	region	4
Sigma70_r4	PF04545.11	gi|433593196|ref|YP_007282682.1|	-	0.0045	16.2	0.2	0.015	14.5	0.1	1.9	1	0	0	1	1	1	1	Sigma-70,	region	4
HrcA_DNA-bdg	PF03444.10	gi|433593196|ref|YP_007282682.1|	-	0.022	14.1	0.0	0.053	12.9	0.0	1.6	2	0	0	2	2	2	0	Winged	helix-turn-helix	transcription	repressor,	HrcA	DNA-binding
GerE	PF00196.14	gi|433593196|ref|YP_007282682.1|	-	0.024	13.9	0.1	0.49	9.7	0.0	2.4	3	0	0	3	3	3	0	Bacterial	regulatory	proteins,	luxR	family
Fe_dep_repress	PF01325.14	gi|433593196|ref|YP_007282682.1|	-	0.039	13.9	0.0	0.1	12.5	0.0	1.7	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_23	PF13384.1	gi|433593196|ref|YP_007282682.1|	-	0.04	13.5	0.1	0.12	12.0	0.0	1.8	2	0	0	2	2	2	0	Homeodomain-like	domain
HTH_28	PF13518.1	gi|433593196|ref|YP_007282682.1|	-	0.076	13.0	0.0	0.2	11.6	0.0	1.7	1	0	0	1	1	1	0	Helix-turn-helix	domain
MarR_2	PF12802.2	gi|433593196|ref|YP_007282682.1|	-	0.089	12.4	0.0	0.47	10.1	0.0	2.1	2	0	0	2	2	2	0	MarR	family
Complex1_49kDa	PF00346.14	gi|433593197|ref|YP_007282683.1|	-	7.8e-65	218.5	0.1	7.7e-41	139.8	0.2	2.1	1	1	1	2	2	2	2	Respiratory-chain	NADH	dehydrogenase,	49	Kd	subunit
Complex1_30kDa	PF00329.14	gi|433593197|ref|YP_007282683.1|	-	6.2e-31	106.6	0.1	1.1e-30	105.8	0.0	1.4	1	0	0	1	1	1	1	Respiratory-chain	NADH	dehydrogenase,	30	Kd	subunit
DNA_ligase_IV	PF11411.3	gi|433593198|ref|YP_007282684.1|	-	0.11	12.2	0.4	0.24	11.1	0.3	1.5	1	0	0	1	1	1	0	DNA	ligase	IV
DUF3268	PF11672.3	gi|433593198|ref|YP_007282684.1|	-	0.16	12.0	2.5	0.18	11.8	1.7	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3268)
Methyltransf_11	PF08241.7	gi|433593199|ref|YP_007282685.1|	-	2.1e-23	82.6	0.0	6.6e-23	81.0	0.0	1.7	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_23	PF13489.1	gi|433593199|ref|YP_007282685.1|	-	3.5e-21	75.5	0.0	4.3e-21	75.2	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|433593199|ref|YP_007282685.1|	-	6.8e-18	64.7	0.0	8.6e-18	64.3	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.13	gi|433593199|ref|YP_007282685.1|	-	8.2e-15	54.5	0.0	1.1e-14	54.1	0.0	1.2	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_12	PF08242.7	gi|433593199|ref|YP_007282685.1|	-	2e-12	47.4	0.0	2.8e-12	46.9	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.1	gi|433593199|ref|YP_007282685.1|	-	3.6e-11	43.3	0.0	6e-11	42.6	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|433593199|ref|YP_007282685.1|	-	1.4e-10	41.7	0.0	2.1e-10	41.1	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_26	PF13659.1	gi|433593199|ref|YP_007282685.1|	-	1.6e-07	31.3	0.0	2.4e-07	30.7	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
MetW	PF07021.7	gi|433593199|ref|YP_007282685.1|	-	9.7e-06	25.0	0.0	1.5e-05	24.5	0.0	1.2	1	0	0	1	1	1	1	Methionine	biosynthesis	protein	MetW
CMAS	PF02353.15	gi|433593199|ref|YP_007282685.1|	-	0.00041	19.5	0.0	0.00062	18.9	0.0	1.3	1	0	0	1	1	1	1	Mycolic	acid	cyclopropane	synthetase
MTS	PF05175.9	gi|433593199|ref|YP_007282685.1|	-	0.0019	17.5	0.0	0.003	16.9	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	small	domain
UPF0020	PF01170.13	gi|433593199|ref|YP_007282685.1|	-	0.0076	15.8	0.0	0.011	15.3	0.0	1.3	1	0	0	1	1	1	1	Putative	RNA	methylase	family	UPF0020
Methyltransf_32	PF13679.1	gi|433593199|ref|YP_007282685.1|	-	0.033	13.8	0.0	0.053	13.2	0.0	1.3	1	0	0	1	1	1	0	Methyltransferase	domain
FmrO	PF07091.6	gi|433593199|ref|YP_007282685.1|	-	0.057	12.4	0.0	0.077	11.9	0.0	1.1	1	0	0	1	1	1	0	Ribosomal	RNA	methyltransferase	(FmrO)
Pox_MCEL	PF03291.11	gi|433593199|ref|YP_007282685.1|	-	0.061	12.1	0.0	0.076	11.8	0.0	1.1	1	0	0	1	1	1	0	mRNA	capping	enzyme
PCMT	PF01135.14	gi|433593199|ref|YP_007282685.1|	-	0.068	12.6	0.0	0.094	12.2	0.0	1.2	1	0	0	1	1	1	0	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Methyltransf_29	PF03141.11	gi|433593199|ref|YP_007282685.1|	-	0.11	10.8	0.0	0.13	10.5	0.0	1.1	1	0	0	1	1	1	0	Putative	S-adenosyl-L-methionine-dependent	methyltransferase
DUF3784	PF12650.2	gi|433593200|ref|YP_007282686.1|	-	1.2e-05	25.2	0.6	1.5e-05	24.8	0.4	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF3784)
DUF973	PF06157.6	gi|433593200|ref|YP_007282686.1|	-	0.00018	20.6	1.7	0.00021	20.3	1.2	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF973)
Cation_efflux	PF01545.16	gi|433593200|ref|YP_007282686.1|	-	0.0021	17.2	4.3	0.0026	16.8	3.0	1.0	1	0	0	1	1	1	1	Cation	efflux	family
DUF3185	PF11381.3	gi|433593200|ref|YP_007282686.1|	-	0.017	14.8	5.0	0.089	12.5	3.4	2.0	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3185)
SDF	PF00375.13	gi|433593200|ref|YP_007282686.1|	-	0.034	12.9	0.2	0.034	12.9	0.1	1.4	2	0	0	2	2	2	0	Sodium:dicarboxylate	symporter	family
SdpI	PF13630.1	gi|433593200|ref|YP_007282686.1|	-	0.039	13.6	7.2	1.5	8.5	1.9	2.1	2	0	0	2	2	2	0	SdpI/YhfL	protein	family
NfeD	PF01957.13	gi|433593200|ref|YP_007282686.1|	-	0.65	10.1	4.8	3	7.9	0.2	2.1	2	0	0	2	2	2	0	NfeD-like	C-terminal,	partner-binding
Amidohydro_1	PF01979.15	gi|433593201|ref|YP_007282687.1|	-	8e-33	114.4	0.0	1.3e-32	113.7	0.0	1.3	1	1	0	1	1	1	1	Amidohydrolase	family
Amidohydro_3	PF07969.6	gi|433593201|ref|YP_007282687.1|	-	1.1e-18	67.6	1.5	1.4e-13	50.8	0.3	2.3	2	0	0	2	2	2	2	Amidohydrolase	family
Amidohydro_4	PF13147.1	gi|433593201|ref|YP_007282687.1|	-	5.4e-14	52.8	9.0	3.1e-13	50.3	6.2	2.2	1	1	0	1	1	1	1	Amidohydrolase
Amidohydro_5	PF13594.1	gi|433593201|ref|YP_007282687.1|	-	9.4e-14	50.9	0.6	6e-13	48.3	0.1	2.4	2	0	0	2	2	2	1	Amidohydrolase
DZR	PF12773.2	gi|433593202|ref|YP_007282688.1|	-	0.0084	15.9	1.0	0.026	14.3	0.7	1.6	1	1	0	1	1	1	1	Double	zinc	ribbon
Nudix_N_2	PF14803.1	gi|433593202|ref|YP_007282688.1|	-	0.0084	15.7	1.5	1.3	8.7	0.1	2.7	2	0	0	2	2	2	1	Nudix	N-terminal
DUF2318	PF10080.4	gi|433593202|ref|YP_007282688.1|	-	0.011	15.4	0.1	0.014	15.1	0.1	1.2	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2318)
DRP	PF06044.7	gi|433593202|ref|YP_007282688.1|	-	0.029	13.3	0.5	0.05	12.6	0.3	1.4	1	1	0	1	1	1	0	Dam-replacing	family
GFA	PF04828.9	gi|433593202|ref|YP_007282688.1|	-	0.051	13.5	1.5	1.8	8.5	0.2	2.2	1	1	1	2	2	2	0	Glutathione-dependent	formaldehyde-activating	enzyme
zinc-ribbons_6	PF07191.7	gi|433593202|ref|YP_007282688.1|	-	0.057	13.2	0.1	0.17	11.7	0.4	1.6	2	0	0	2	2	2	0	zinc-ribbons
Lar_restr_allev	PF14354.1	gi|433593202|ref|YP_007282688.1|	-	0.061	13.6	3.1	0.2	12.0	2.2	1.9	1	1	0	1	1	1	0	Restriction	alleviation	protein	Lar
C1_1	PF00130.17	gi|433593202|ref|YP_007282688.1|	-	0.072	12.8	0.9	0.12	12.1	0.6	1.3	1	0	0	1	1	1	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
zinc_ribbon_2	PF13240.1	gi|433593202|ref|YP_007282688.1|	-	0.084	12.3	4.1	2.7	7.5	0.1	2.6	3	0	0	3	3	3	0	zinc-ribbon	domain
UPF0547	PF10571.4	gi|433593202|ref|YP_007282688.1|	-	0.1	12.2	1.4	0.78	9.4	0.9	2.2	1	1	1	2	2	2	0	Uncharacterised	protein	family	UPF0547
zf-ribbon_3	PF13248.1	gi|433593202|ref|YP_007282688.1|	-	0.36	10.1	7.6	1.5	8.0	3.6	2.7	2	1	2	4	4	4	0	zinc-ribbon	domain
DNA_ligase_ZBD	PF03119.11	gi|433593202|ref|YP_007282688.1|	-	0.86	9.3	3.7	1	9.1	0.3	2.5	2	0	0	2	2	2	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
Zn-ribbon_8	PF09723.5	gi|433593203|ref|YP_007282689.1|	-	0.093	12.6	0.9	6.1	6.8	0.0	2.3	2	0	0	2	2	2	0	Zinc	ribbon	domain
OrfB_Zn_ribbon	PF07282.6	gi|433593203|ref|YP_007282689.1|	-	0.1	12.3	0.1	0.19	11.4	0.1	1.4	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
DUF3797	PF12677.2	gi|433593203|ref|YP_007282689.1|	-	1.2	8.8	4.4	4.3	7.0	0.2	2.2	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF3797)
PDDEXK_1	PF12705.2	gi|433593204|ref|YP_007282690.1|	-	0.11	11.8	0.2	0.14	11.4	0.1	1.3	1	0	0	1	1	1	0	PD-(D/E)XK	nuclease	superfamily
NIR_SIR_ferr	PF03460.12	gi|433593207|ref|YP_007282693.1|	-	0.11	12.1	0.0	3.8	7.2	0.0	2.2	2	0	0	2	2	2	0	Nitrite/Sulfite	reductase	ferredoxin-like	half	domain
zinc_ribbon_2	PF13240.1	gi|433593209|ref|YP_007282695.1|	-	0.034	13.6	2.2	0.034	13.6	1.5	2.6	3	0	0	3	3	3	0	zinc-ribbon	domain
DZR	PF12773.2	gi|433593209|ref|YP_007282695.1|	-	0.079	12.7	9.0	0.39	10.5	1.1	2.8	3	0	0	3	3	3	0	Double	zinc	ribbon
zf-ribbon_3	PF13248.1	gi|433593209|ref|YP_007282695.1|	-	0.86	8.8	11.0	0.078	12.2	2.5	2.7	3	0	0	3	3	3	0	zinc-ribbon	domain
RNA_POL_M_15KD	PF02150.11	gi|433593209|ref|YP_007282695.1|	-	3	7.5	10.1	4.6	7.0	0.1	3.6	3	1	0	3	3	3	0	RNA	polymerases	M/15	Kd	subunit
OrfB_Zn_ribbon	PF07282.6	gi|433593210|ref|YP_007282696.1|	-	6.6e-23	80.1	1.6	6.6e-23	80.1	1.1	1.7	2	0	0	2	2	2	1	Putative	transposase	DNA-binding	domain
OrfB_IS605	PF01385.14	gi|433593210|ref|YP_007282696.1|	-	2.2e-11	43.6	0.0	3.6e-11	42.9	0.0	1.3	1	0	0	1	1	1	1	Probable	transposase
DZR	PF12773.2	gi|433593210|ref|YP_007282696.1|	-	0.015	15.0	3.6	0.036	13.8	2.5	1.6	1	0	0	1	1	1	0	Double	zinc	ribbon
TF_Zn_Ribbon	PF08271.7	gi|433593210|ref|YP_007282696.1|	-	0.11	11.8	1.3	2.5	7.4	0.0	2.7	1	1	1	2	2	2	0	TFIIB	zinc-binding
CIAPIN1	PF05093.8	gi|433593210|ref|YP_007282696.1|	-	0.12	12.4	2.9	1.2	9.2	0.9	2.5	2	1	0	2	2	2	0	Cytokine-induced	anti-apoptosis	inhibitor	1,	Fe-S	biogenesis
DNA_RNApol_7kD	PF03604.8	gi|433593210|ref|YP_007282696.1|	-	1.7	8.1	5.7	2.7	7.5	2.0	2.6	2	1	1	3	3	3	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
Tnp_zf-ribbon_2	PF13842.1	gi|433593210|ref|YP_007282696.1|	-	2.6	8.5	5.2	5.2	7.5	2.8	2.0	1	1	1	2	2	2	0	DDE_Tnp_1-like	zinc-ribbon
zinc_ribbon_2	PF13240.1	gi|433593210|ref|YP_007282696.1|	-	6.2	6.4	5.7	47	3.6	0.3	2.3	1	1	2	3	3	3	0	zinc-ribbon	domain
TFIIB	PF00382.14	gi|433593211|ref|YP_007282697.1|	-	8.2e-32	108.8	2.6	4.6e-18	64.7	0.3	2.4	2	0	0	2	2	2	2	Transcription	factor	TFIIB	repeat
TF_Zn_Ribbon	PF08271.7	gi|433593211|ref|YP_007282697.1|	-	3.6e-12	45.3	2.5	6.4e-12	44.5	1.7	1.4	1	0	0	1	1	1	1	TFIIB	zinc-binding
DZR	PF12773.2	gi|433593211|ref|YP_007282697.1|	-	0.024	14.4	1.0	0.053	13.3	0.7	1.5	1	0	0	1	1	1	0	Double	zinc	ribbon
OrfB_Zn_ribbon	PF07282.6	gi|433593211|ref|YP_007282697.1|	-	0.026	14.1	1.9	0.08	12.6	0.9	2.1	2	0	0	2	2	2	0	Putative	transposase	DNA-binding	domain
HTH_24	PF13412.1	gi|433593211|ref|YP_007282697.1|	-	0.038	13.3	0.1	0.12	11.7	0.0	1.9	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
zinc-ribbons_6	PF07191.7	gi|433593211|ref|YP_007282697.1|	-	0.073	12.8	0.8	0.18	11.6	0.6	1.6	1	0	0	1	1	1	0	zinc-ribbons
Prok-RING_1	PF14446.1	gi|433593211|ref|YP_007282697.1|	-	0.25	11.1	2.9	0.52	10.0	2.0	1.5	1	0	0	1	1	1	0	Prokaryotic	RING	finger	family	1
UPF0547	PF10571.4	gi|433593211|ref|YP_007282697.1|	-	0.37	10.5	2.2	0.8	9.4	1.5	1.5	1	0	0	1	1	1	0	Uncharacterised	protein	family	UPF0547
PEPcase	PF00311.12	gi|433593212|ref|YP_007282698.1|	-	3.8e-233	775.8	0.0	4.7e-233	775.5	0.0	1.1	1	0	0	1	1	1	1	Phosphoenolpyruvate	carboxylase
PEPcase_2	PF14010.1	gi|433593212|ref|YP_007282698.1|	-	0.00012	20.5	0.0	0.00023	19.6	0.0	1.4	1	0	0	1	1	1	1	Phosphoenolpyruvate	carboxylase
DUF4070	PF13282.1	gi|433593212|ref|YP_007282698.1|	-	0.051	13.1	0.0	1.1	8.8	0.1	2.4	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4070)
Peptidase_S9	PF00326.16	gi|433593213|ref|YP_007282699.1|	-	7.6e-17	61.2	0.1	1.3e-16	60.5	0.1	1.2	1	0	0	1	1	1	1	Prolyl	oligopeptidase	family
PD40	PF07676.7	gi|433593213|ref|YP_007282699.1|	-	1.7e-06	27.5	5.7	0.013	15.1	0.1	5.2	5	0	0	5	5	5	2	WD40-like	Beta	Propeller	Repeat
DPPIV_N	PF00930.16	gi|433593213|ref|YP_007282699.1|	-	9.5e-05	21.1	0.0	1.1	7.7	0.0	3.8	3	1	0	4	4	4	2	Dipeptidyl	peptidase	IV	(DPP	IV)	N-terminal	region
Abhydrolase_5	PF12695.2	gi|433593213|ref|YP_007282699.1|	-	0.00065	19.4	0.0	0.0019	17.9	0.0	1.8	2	0	0	2	2	2	1	Alpha/beta	hydrolase	family
DLH	PF01738.13	gi|433593213|ref|YP_007282699.1|	-	0.0052	16.0	0.0	0.0087	15.3	0.0	1.3	1	0	0	1	1	1	1	Dienelactone	hydrolase	family
Gmad1	PF10647.4	gi|433593213|ref|YP_007282699.1|	-	0.0076	15.6	8.6	0.0084	15.5	1.9	2.7	2	1	0	2	2	2	1	Lipoprotein	LpqB	beta-propeller	domain
4HBT_2	PF13279.1	gi|433593214|ref|YP_007282700.1|	-	1e-16	61.4	0.0	1.2e-16	61.2	0.0	1.0	1	0	0	1	1	1	1	Thioesterase-like	superfamily
4HBT	PF03061.17	gi|433593214|ref|YP_007282700.1|	-	4.4e-14	52.3	0.1	6.6e-14	51.8	0.0	1.3	1	0	0	1	1	1	1	Thioesterase	superfamily
Acyl-ACP_TE	PF01643.12	gi|433593214|ref|YP_007282700.1|	-	2.2e-07	30.1	0.0	4.4e-07	29.1	0.0	1.6	1	1	0	1	1	1	1	Acyl-ACP	thioesterase
Rhodanese	PF00581.15	gi|433593214|ref|YP_007282700.1|	-	0.014	15.7	0.1	0.72	10.2	0.0	2.1	1	1	1	2	2	2	0	Rhodanese-like	domain
DUF162	PF02589.10	gi|433593215|ref|YP_007282701.1|	-	2.9e-41	141.0	0.2	5.1e-41	140.2	0.2	1.4	1	0	0	1	1	1	1	Uncharacterised	ACR,	YkgG	family	COG1556
Fer4_8	PF13183.1	gi|433593215|ref|YP_007282701.1|	-	8.4e-09	35.3	5.5	1.7e-08	34.3	3.8	1.6	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_18	PF13746.1	gi|433593215|ref|YP_007282701.1|	-	8.6e-08	32.4	4.9	3.5e-05	24.1	0.5	2.7	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_17	PF13534.1	gi|433593215|ref|YP_007282701.1|	-	1.7e-06	28.2	4.3	3.6e-06	27.2	3.0	1.6	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_7	PF12838.2	gi|433593215|ref|YP_007282701.1|	-	2.5e-05	24.5	7.4	6.2e-05	23.3	5.2	1.7	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_9	PF13187.1	gi|433593215|ref|YP_007282701.1|	-	0.00013	22.1	10.9	0.0019	18.3	7.9	2.4	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_10	PF13237.1	gi|433593215|ref|YP_007282701.1|	-	0.00016	21.3	10.6	0.013	15.3	1.6	2.4	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4	PF00037.22	gi|433593215|ref|YP_007282701.1|	-	0.00024	20.5	13.0	0.0009	18.7	1.5	2.5	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_21	PF14697.1	gi|433593215|ref|YP_007282701.1|	-	0.00025	20.8	10.1	0.002	17.9	7.0	2.2	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_6	PF12837.2	gi|433593215|ref|YP_007282701.1|	-	0.0022	17.7	12.7	0.007	16.1	1.6	2.5	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_2	PF12797.2	gi|433593215|ref|YP_007282701.1|	-	0.0049	16.7	11.6	0.078	12.9	1.8	2.6	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_4	PF12800.2	gi|433593215|ref|YP_007282701.1|	-	0.013	15.7	15.1	0.093	13.1	3.0	2.5	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_20	PF14691.1	gi|433593215|ref|YP_007282701.1|	-	0.039	13.5	0.1	0.039	13.5	0.1	2.6	3	0	0	3	3	3	0	Dihydroprymidine	dehydrogenase	domain	II,	4Fe-4S	cluster
DUF3050	PF11251.3	gi|433593215|ref|YP_007282701.1|	-	0.14	11.3	0.0	0.28	10.3	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3050)
Fer4_3	PF12798.2	gi|433593215|ref|YP_007282701.1|	-	0.39	11.3	17.0	0.11	13.0	3.3	2.6	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_16	PF13484.1	gi|433593215|ref|YP_007282701.1|	-	2.4	8.9	13.0	6.3	7.6	2.5	2.4	1	1	1	2	2	2	0	4Fe-4S	double	cluster	binding	domain
DUF162	PF02589.10	gi|433593216|ref|YP_007282702.1|	-	8.9e-23	80.7	0.0	1.1e-22	80.4	0.0	1.1	1	0	0	1	1	1	1	Uncharacterised	ACR,	YkgG	family	COG1556
DDE_Tnp_1	PF01609.16	gi|433593217|ref|YP_007282703.1|	-	1.5e-14	54.0	0.0	2.1e-14	53.5	0.0	1.2	1	0	0	1	1	1	1	Transposase	DDE	domain
DUF772	PF05598.6	gi|433593217|ref|YP_007282703.1|	-	0.0027	17.5	0.0	0.0054	16.5	0.0	1.5	1	0	0	1	1	1	1	Transposase	domain	(DUF772)
OrfB_IS605	PF01385.14	gi|433593218|ref|YP_007282704.1|	-	1.3e-53	181.7	0.0	1.7e-53	181.3	0.0	1.1	1	0	0	1	1	1	1	Probable	transposase
OrfB_Zn_ribbon	PF07282.6	gi|433593218|ref|YP_007282704.1|	-	1.2e-18	66.5	0.9	2.3e-18	65.5	0.6	1.5	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
Lipase_GDSL_2	PF13472.1	gi|433593218|ref|YP_007282704.1|	-	0.0021	18.1	0.4	0.0053	16.9	0.1	1.8	2	0	0	2	2	2	1	GDSL-like	Lipase/Acylhydrolase	family
mRNA_stabil	PF13929.1	gi|433593218|ref|YP_007282704.1|	-	0.15	10.9	0.1	1.5	7.6	0.0	2.0	2	0	0	2	2	2	0	mRNA	stabilisation
DUF3784	PF12650.2	gi|433593220|ref|YP_007282706.1|	-	0.003	17.4	0.6	0.0034	17.2	0.4	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF3784)
SNF	PF00209.13	gi|433593220|ref|YP_007282706.1|	-	0.0037	15.8	0.7	0.0042	15.6	0.5	1.0	1	0	0	1	1	1	1	Sodium:neurotransmitter	symporter	family
DUF2079	PF09852.4	gi|433593220|ref|YP_007282706.1|	-	0.026	13.2	1.4	0.027	13.2	1.0	1.1	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2079)
DUF2178	PF09946.4	gi|433593220|ref|YP_007282706.1|	-	0.13	12.0	1.3	0.15	11.7	0.9	1.2	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2178)
DUF2648	PF10855.3	gi|433593220|ref|YP_007282706.1|	-	0.39	10.1	2.9	2.9	7.3	0.2	2.5	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2648)
DUF2250	PF10007.4	gi|433593222|ref|YP_007282708.1|	-	1.9e-05	24.4	0.0	0.00011	22.0	0.0	1.8	1	1	1	2	2	2	1	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
MarR_2	PF12802.2	gi|433593222|ref|YP_007282708.1|	-	0.0017	17.9	0.0	0.002	17.7	0.0	1.2	1	0	0	1	1	1	1	MarR	family
HTH_27	PF13463.1	gi|433593222|ref|YP_007282708.1|	-	0.0069	16.6	0.0	0.01	16.1	0.0	1.3	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
Mrr_N	PF14338.1	gi|433593222|ref|YP_007282708.1|	-	0.0072	16.3	0.0	0.0099	15.9	0.0	1.3	1	1	0	1	1	1	1	Mrr	N-terminal	domain
HTH_24	PF13412.1	gi|433593222|ref|YP_007282708.1|	-	0.019	14.3	0.0	0.22	10.9	0.0	2.0	1	1	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HTH_AsnC-type	PF13404.1	gi|433593222|ref|YP_007282708.1|	-	0.073	12.6	0.1	0.096	12.2	0.0	1.2	1	0	0	1	1	1	0	AsnC-type	helix-turn-helix	domain
DUF2161	PF09929.4	gi|433593222|ref|YP_007282708.1|	-	0.082	12.8	0.0	0.12	12.2	0.0	1.3	1	1	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2161)
DUF4423	PF14394.1	gi|433593222|ref|YP_007282708.1|	-	0.13	11.7	0.0	0.17	11.4	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4423)
TrmB	PF01978.14	gi|433593224|ref|YP_007282710.1|	-	3.6e-10	39.4	0.2	1.3e-09	37.6	0.0	1.8	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_20	PF12840.2	gi|433593224|ref|YP_007282710.1|	-	9.6e-07	28.5	0.1	3e-06	26.9	0.0	1.9	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_24	PF13412.1	gi|433593224|ref|YP_007282710.1|	-	8.9e-06	24.9	0.0	0.00013	21.2	0.0	2.4	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
HTH_5	PF01022.15	gi|433593224|ref|YP_007282710.1|	-	3.2e-05	23.5	0.0	7.8e-05	22.2	0.0	1.7	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
F-112	PF09645.5	gi|433593224|ref|YP_007282710.1|	-	0.00056	19.7	0.0	0.77	9.6	0.0	2.2	2	0	0	2	2	2	2	F-112	protein
HTH_IclR	PF09339.5	gi|433593224|ref|YP_007282710.1|	-	0.00085	18.8	0.7	0.011	15.2	0.0	2.5	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
MarR_2	PF12802.2	gi|433593224|ref|YP_007282710.1|	-	0.0017	18.0	0.5	0.012	15.2	0.0	2.2	2	0	0	2	2	2	1	MarR	family
RP-C	PF03428.8	gi|433593224|ref|YP_007282710.1|	-	0.008	15.6	0.0	0.015	14.7	0.0	1.4	1	0	0	1	1	1	1	Replication	protein	C	N-terminal	domain
Penicillinase_R	PF03965.11	gi|433593224|ref|YP_007282710.1|	-	0.012	15.6	0.0	0.023	14.8	0.0	1.4	1	0	0	1	1	1	0	Penicillinase	repressor
HTH_29	PF13551.1	gi|433593224|ref|YP_007282710.1|	-	0.064	13.4	0.1	0.15	12.2	0.0	1.7	2	0	0	2	2	2	0	Winged	helix-turn	helix
PadR	PF03551.9	gi|433593224|ref|YP_007282710.1|	-	0.093	12.5	0.0	0.33	10.7	0.0	2.0	1	1	1	2	2	2	0	Transcriptional	regulator	PadR-like	family
FeoC	PF09012.5	gi|433593224|ref|YP_007282710.1|	-	0.13	12.0	0.0	2.1	8.1	0.0	2.2	2	0	0	2	2	2	0	FeoC	like	transcriptional	regulator
NB-ARC	PF00931.17	gi|433593225|ref|YP_007282711.1|	-	0.16	10.7	0.0	5	5.8	0.0	2.3	2	0	0	2	2	2	0	NB-ARC	domain
DUF4487	PF14868.1	gi|433593225|ref|YP_007282711.1|	-	0.17	10.5	0.0	1.1	7.9	0.0	1.9	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4487)
AAA_16	PF13191.1	gi|433593225|ref|YP_007282711.1|	-	2	8.3	15.7	0.29	11.0	2.2	5.1	2	2	1	3	3	3	0	AAA	ATPase	domain
MarR_2	PF12802.2	gi|433593226|ref|YP_007282712.1|	-	0.11	12.1	0.0	0.18	11.5	0.0	1.3	1	0	0	1	1	1	0	MarR	family
SWIM	PF04434.12	gi|433593229|ref|YP_007282715.1|	-	0.0037	16.7	0.3	0.0093	15.4	0.2	1.6	1	1	0	1	1	1	1	SWIM	zinc	finger
SprT-like	PF10263.4	gi|433593229|ref|YP_007282715.1|	-	1.3	8.6	3.8	2.3	7.8	2.6	1.7	1	1	0	1	1	1	0	SprT-like	family
KAP_NTPase	PF07693.9	gi|433593230|ref|YP_007282716.1|	-	1.2e-24	86.9	0.2	1.1e-23	83.7	0.1	2.5	1	1	0	1	1	1	1	KAP	family	P-loop	domain
AAA_16	PF13191.1	gi|433593230|ref|YP_007282716.1|	-	1.6e-05	24.9	7.5	0.00049	20.1	0.1	5.1	4	2	0	4	4	4	1	AAA	ATPase	domain
ABC_tran	PF00005.22	gi|433593230|ref|YP_007282716.1|	-	0.00014	22.1	1.4	0.075	13.3	0.0	3.7	4	0	0	4	4	4	1	ABC	transporter
AAA_22	PF13401.1	gi|433593230|ref|YP_007282716.1|	-	0.00039	20.5	0.2	0.14	12.3	0.0	3.7	3	0	0	3	3	3	1	AAA	domain
AAA_18	PF13238.1	gi|433593230|ref|YP_007282716.1|	-	0.023	15.0	3.1	1.1	9.5	0.0	4.3	5	0	0	5	5	5	0	AAA	domain
AAA_17	PF13207.1	gi|433593230|ref|YP_007282716.1|	-	0.24	12.2	0.1	0.24	12.2	0.0	4.0	3	2	0	4	4	4	0	AAA	domain
DUF87	PF01935.12	gi|433593230|ref|YP_007282716.1|	-	0.8	9.4	10.0	36	4.0	0.0	4.8	3	2	0	4	4	4	0	Domain	of	unknown	function	DUF87
AAA_10	PF12846.2	gi|433593230|ref|YP_007282716.1|	-	2.7	7.3	0.0	2.7	7.3	0.0	4.2	2	1	0	3	3	3	0	AAA-like	domain
Sigma70_r3	PF04539.11	gi|433593231|ref|YP_007282717.1|	-	0.00019	21.2	0.1	0.073	12.9	0.0	2.5	2	0	0	2	2	2	2	Sigma-70	region	3
LexA_DNA_bind	PF01726.11	gi|433593231|ref|YP_007282717.1|	-	0.00042	19.8	0.1	0.096	12.2	0.0	2.5	2	1	0	2	2	2	2	LexA	DNA	binding	domain
GH-E	PF14410.1	gi|433593231|ref|YP_007282717.1|	-	0.0027	17.8	0.4	0.29	11.3	0.0	2.7	2	1	0	2	2	2	1	HNH/ENDO	VII	superfamily	nuclease	with	conserved	GHE	residues
Zn-ribbon_8	PF09723.5	gi|433593231|ref|YP_007282717.1|	-	0.084	12.8	0.5	0.2	11.6	0.4	1.6	1	0	0	1	1	1	0	Zinc	ribbon	domain
Desulfoferrod_N	PF06397.7	gi|433593231|ref|YP_007282717.1|	-	0.084	12.2	0.1	0.13	11.6	0.1	1.3	1	0	0	1	1	1	0	Desulfoferrodoxin,	N-terminal	domain
PaREP1	PF05942.6	gi|433593231|ref|YP_007282717.1|	-	0.13	12.1	0.0	2	8.3	0.0	2.2	1	1	1	2	2	2	0	Archaeal	PaREP1/PaREP8	family
tRNA_anti-codon	PF01336.20	gi|433593232|ref|YP_007282718.1|	-	3.6e-06	26.7	0.0	6.6e-06	25.8	0.0	1.5	1	0	0	1	1	1	1	OB-fold	nucleic	acid	binding	domain
ABC_tran_2	PF12848.2	gi|433593232|ref|YP_007282718.1|	-	0.79	9.5	7.9	2.1	8.2	5.5	1.7	1	0	0	1	1	1	0	ABC	transporter
BEX	PF04538.7	gi|433593232|ref|YP_007282718.1|	-	2.6	8.3	6.7	0.59	10.3	2.1	1.8	1	1	1	2	2	2	0	Brain	expressed	X-linked	like	family
PemK	PF02452.12	gi|433593234|ref|YP_007282720.1|	-	0.00011	22.3	0.0	0.00013	22.1	0.0	1.1	1	0	0	1	1	1	1	PemK-like	protein
MarR_2	PF12802.2	gi|433593235|ref|YP_007282721.1|	-	1.3e-06	27.9	0.0	1.9e-06	27.4	0.0	1.2	1	0	0	1	1	1	1	MarR	family
DUF2250	PF10007.4	gi|433593235|ref|YP_007282721.1|	-	4.9e-05	23.1	0.1	5.9e-05	22.8	0.1	1.2	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
Fe_dep_repress	PF01325.14	gi|433593235|ref|YP_007282721.1|	-	0.00016	21.5	0.0	0.0034	17.3	0.0	2.1	2	0	0	2	2	2	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
Rrf2	PF02082.15	gi|433593235|ref|YP_007282721.1|	-	0.00037	20.5	0.1	0.00084	19.4	0.0	1.5	2	0	0	2	2	2	1	Transcriptional	regulator
HTH_27	PF13463.1	gi|433593235|ref|YP_007282721.1|	-	0.00071	19.8	0.1	0.0012	19.0	0.1	1.4	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
TrmB	PF01978.14	gi|433593235|ref|YP_007282721.1|	-	0.0014	18.2	0.0	0.0023	17.6	0.0	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_Crp_2	PF13545.1	gi|433593235|ref|YP_007282721.1|	-	0.0028	17.4	0.0	0.0057	16.4	0.0	1.5	1	1	0	1	1	1	1	Crp-like	helix-turn-helix	domain
HTH_11	PF08279.7	gi|433593235|ref|YP_007282721.1|	-	0.0065	16.0	0.2	0.011	15.4	0.1	1.3	1	0	0	1	1	1	1	HTH	domain
UPF0240	PF06784.6	gi|433593235|ref|YP_007282721.1|	-	0.0069	16.0	0.1	0.012	15.3	0.0	1.4	2	0	0	2	2	2	1	Uncharacterised	protein	family	(UPF0240)
HTH_24	PF13412.1	gi|433593235|ref|YP_007282721.1|	-	0.012	14.9	0.1	0.023	14.0	0.1	1.5	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HTH_45	PF14947.1	gi|433593235|ref|YP_007282721.1|	-	0.012	15.3	0.0	0.02	14.7	0.0	1.3	1	0	0	1	1	1	0	Winged	helix-turn-helix
HTH_IclR	PF09339.5	gi|433593235|ref|YP_007282721.1|	-	0.015	14.9	0.0	0.023	14.3	0.0	1.3	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
MarR	PF01047.17	gi|433593235|ref|YP_007282721.1|	-	0.015	14.9	0.0	0.027	14.1	0.0	1.4	1	0	0	1	1	1	0	MarR	family
HTH_36	PF13730.1	gi|433593235|ref|YP_007282721.1|	-	0.017	15.2	0.0	0.024	14.7	0.0	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
TFIIE_alpha	PF02002.12	gi|433593235|ref|YP_007282721.1|	-	0.038	13.4	0.7	0.051	13.0	0.5	1.5	1	1	0	1	1	1	0	TFIIE	alpha	subunit
FeoC	PF09012.5	gi|433593235|ref|YP_007282721.1|	-	0.048	13.3	0.0	0.08	12.6	0.0	1.3	1	0	0	1	1	1	0	FeoC	like	transcriptional	regulator
DUF1348	PF07080.6	gi|433593235|ref|YP_007282721.1|	-	0.052	13.3	0.7	0.063	13.0	0.5	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1348)
HTH_23	PF13384.1	gi|433593235|ref|YP_007282721.1|	-	0.052	13.2	0.1	0.16	11.6	0.0	1.7	2	0	0	2	2	2	0	Homeodomain-like	domain
HTH_20	PF12840.2	gi|433593235|ref|YP_007282721.1|	-	0.066	13.0	0.0	0.11	12.3	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
Glyco_tranf_2_4	PF13704.1	gi|433593235|ref|YP_007282721.1|	-	0.99	9.7	8.4	0.4	11.0	1.1	2.8	1	1	1	2	2	2	0	Glycosyl	transferase	family	2
PadR	PF03551.9	gi|433593236|ref|YP_007282722.1|	-	2e-16	59.5	0.9	2.6e-16	59.1	0.6	1.2	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
HTH_27	PF13463.1	gi|433593236|ref|YP_007282722.1|	-	0.00055	20.1	0.0	0.0007	19.8	0.0	1.2	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_45	PF14947.1	gi|433593236|ref|YP_007282722.1|	-	0.00098	18.8	0.1	0.0014	18.4	0.1	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix
DUF1495	PF07381.6	gi|433593236|ref|YP_007282722.1|	-	0.084	12.5	0.1	0.11	12.1	0.0	1.3	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain	(DUF1495)
MarR_2	PF12802.2	gi|433593236|ref|YP_007282722.1|	-	0.14	11.8	0.9	1.6	8.4	0.1	2.3	2	1	0	2	2	2	0	MarR	family
DUF4364	PF14277.1	gi|433593236|ref|YP_007282722.1|	-	0.15	11.6	0.0	0.19	11.3	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4364)
UPF0175	PF03683.8	gi|433593237|ref|YP_007282723.1|	-	2.2e-11	43.0	0.0	2.5e-11	42.8	0.0	1.1	1	0	0	1	1	1	1	Uncharacterised	protein	family	(UPF0175)
Plasmid_stabil	PF05016.9	gi|433593238|ref|YP_007282724.1|	-	0.0015	18.9	0.0	0.0022	18.3	0.0	1.3	1	0	0	1	1	1	1	Plasmid	stabilisation	system	protein
RE_AccI	PF09545.5	gi|433593238|ref|YP_007282724.1|	-	0.0074	14.8	0.0	0.0088	14.6	0.0	1.0	1	0	0	1	1	1	1	AccI	restriction	endonuclease
RHH_1	PF01402.16	gi|433593239|ref|YP_007282725.1|	-	2e-06	27.4	0.1	3.7e-06	26.6	0.0	1.4	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
FlgN	PF05130.7	gi|433593240|ref|YP_007282726.1|	-	0.00054	20.2	1.5	0.0026	18.0	1.5	1.8	2	0	0	2	2	1	1	FlgN	protein
ATG16	PF08614.6	gi|433593240|ref|YP_007282726.1|	-	0.0024	17.7	5.1	0.0024	17.7	3.5	1.6	2	0	0	2	2	2	1	Autophagy	protein	16	(ATG16)
DUF3972	PF13118.1	gi|433593240|ref|YP_007282726.1|	-	0.011	15.8	1.5	0.029	14.4	1.0	1.7	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3972)
Taxilin	PF09728.4	gi|433593240|ref|YP_007282726.1|	-	0.014	14.4	1.4	0.025	13.7	1.0	1.3	1	0	0	1	1	1	0	Myosin-like	coiled-coil	protein
SlyX	PF04102.7	gi|433593240|ref|YP_007282726.1|	-	0.017	15.5	3.3	0.07	13.5	1.6	2.5	3	0	0	3	3	2	0	SlyX
Atg14	PF10186.4	gi|433593240|ref|YP_007282726.1|	-	0.03	13.2	1.4	0.044	12.7	0.9	1.2	1	0	0	1	1	1	0	UV	radiation	resistance	protein	and	autophagy-related	subunit	14
HrpA_pilin	PF09589.5	gi|433593240|ref|YP_007282726.1|	-	0.051	13.9	0.0	0.11	12.9	0.0	1.6	1	1	0	1	1	1	0	HrpA	pilus	formation	protein
Med9	PF07544.8	gi|433593240|ref|YP_007282726.1|	-	0.059	13.1	1.5	0.11	12.2	1.0	1.5	1	0	0	1	1	1	0	RNA	polymerase	II	transcription	mediator	complex	subunit	9
IncA	PF04156.9	gi|433593240|ref|YP_007282726.1|	-	0.08	12.5	1.7	0.14	11.7	1.2	1.4	1	0	0	1	1	1	0	IncA	protein
Prefoldin_2	PF01920.15	gi|433593240|ref|YP_007282726.1|	-	0.14	11.9	2.7	0.3	10.8	1.9	1.5	1	0	0	1	1	1	0	Prefoldin	subunit
DUF972	PF06156.8	gi|433593240|ref|YP_007282726.1|	-	0.14	12.4	1.3	0.32	11.3	0.9	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF972)
XhlA	PF10779.4	gi|433593240|ref|YP_007282726.1|	-	0.22	11.4	3.9	0.49	10.3	2.7	1.6	1	0	0	1	1	1	0	Haemolysin	XhlA
V_ATPase_I	PF01496.14	gi|433593240|ref|YP_007282726.1|	-	0.26	9.1	1.4	0.35	8.6	1.0	1.1	1	0	0	1	1	1	0	V-type	ATPase	116kDa	subunit	family
DUF904	PF06005.7	gi|433593240|ref|YP_007282726.1|	-	0.61	10.4	4.3	1.4	9.2	3.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF904)
Rep_4	PF05797.6	gi|433593240|ref|YP_007282726.1|	-	0.8	8.3	2.9	1.5	7.4	2.0	1.4	1	0	0	1	1	1	0	Yeast	trans-acting	factor	(REP1/REP2)
AAA_10	PF12846.2	gi|433593242|ref|YP_007282728.1|	-	3.1e-20	72.8	0.3	5.5e-20	72.0	0.2	1.3	1	0	0	1	1	1	1	AAA-like	domain
TrwB_AAD_bind	PF10412.4	gi|433593242|ref|YP_007282728.1|	-	9.2e-07	27.8	0.0	0.0083	14.7	0.0	2.2	2	0	0	2	2	2	2	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
TraG-D_C	PF12696.2	gi|433593242|ref|YP_007282728.1|	-	1.1e-06	28.5	0.0	2.5e-06	27.3	0.0	1.6	1	0	0	1	1	1	1	TraM	recognition	site	of	TraD	and	TraG
T4SS-DNA_transf	PF02534.9	gi|433593242|ref|YP_007282728.1|	-	0.00016	20.3	0.1	0.00057	18.5	0.1	1.7	2	0	0	2	2	2	1	Type	IV	secretory	system	Conjugative	DNA	transfer
FtsK_SpoIIIE	PF01580.13	gi|433593242|ref|YP_007282728.1|	-	0.00082	18.8	0.3	0.022	14.2	0.0	2.9	3	0	0	3	3	3	1	FtsK/SpoIIIE	family
DUF87	PF01935.12	gi|433593242|ref|YP_007282728.1|	-	0.083	12.6	0.2	0.9	9.3	0.0	2.4	2	1	0	2	2	2	0	Domain	of	unknown	function	DUF87
NACHT	PF05729.7	gi|433593242|ref|YP_007282728.1|	-	0.14	11.8	0.0	0.4	10.3	0.0	1.8	2	0	0	2	2	2	0	NACHT	domain
Rsa3	PF14615.1	gi|433593243|ref|YP_007282729.1|	-	0.013	14.7	0.1	0.033	13.4	0.0	1.7	2	0	0	2	2	2	0	Ribosome-assembly	protein	3
DUF3275	PF11679.3	gi|433593243|ref|YP_007282729.1|	-	0.016	14.8	0.4	0.028	14.0	0.3	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3275)
AAA_10	PF12846.2	gi|433593244|ref|YP_007282730.1|	-	4.7e-39	134.6	0.2	4.7e-39	134.6	0.1	2.2	3	0	0	3	3	3	1	AAA-like	domain
AAA_22	PF13401.1	gi|433593244|ref|YP_007282730.1|	-	0.00024	21.2	0.6	0.29	11.2	0.3	3.2	2	1	0	2	2	2	2	AAA	domain
Zot	PF05707.7	gi|433593244|ref|YP_007282730.1|	-	0.0004	19.9	0.1	0.023	14.1	0.0	2.4	2	0	0	2	2	2	1	Zonular	occludens	toxin	(Zot)
TraG-D_C	PF12696.2	gi|433593244|ref|YP_007282730.1|	-	0.00049	19.9	0.0	0.0017	18.2	0.0	1.9	2	0	0	2	2	2	1	TraM	recognition	site	of	TraD	and	TraG
Mfa2	PF08842.5	gi|433593246|ref|YP_007282732.1|	-	0.033	13.5	0.0	0.065	12.5	0.0	1.4	1	0	0	1	1	1	0	Fimbrillin-A	associated	anchor	proteins	Mfa1	and	Mfa2
T2SL	PF05134.8	gi|433593247|ref|YP_007282733.1|	-	0.029	13.5	0.0	0.067	12.3	0.0	1.5	1	0	0	1	1	1	0	Type	II	secretion	system	(T2SS),	protein	L
Phage_int_SAM_1	PF02899.12	gi|433593249|ref|YP_007282735.1|	-	1.7e-06	28.0	0.2	0.00034	20.7	0.1	3.5	2	1	0	2	2	2	1	Phage	integrase,	N-terminal	SAM-like	domain
Phage_int_SAM_4	PF13495.1	gi|433593249|ref|YP_007282735.1|	-	0.015	15.5	0.0	0.027	14.7	0.0	1.4	1	0	0	1	1	1	0	Phage	integrase,	N-terminal	SAM-like	domain
Phage_integrase	PF00589.17	gi|433593249|ref|YP_007282735.1|	-	0.1	12.2	0.0	0.44	10.1	0.0	2.2	2	1	0	2	2	2	0	Phage	integrase	family
SPDY	PF03771.11	gi|433593250|ref|YP_007282736.1|	-	0.031	13.7	0.6	0.074	12.5	0.4	1.7	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF317)
2OG-FeII_Oxy_4	PF13661.1	gi|433593250|ref|YP_007282736.1|	-	0.15	11.6	2.7	0.2	11.3	1.1	1.7	1	1	1	2	2	2	0	2OG-Fe(II)	oxygenase	superfamily
Mnd1	PF03962.10	gi|433593251|ref|YP_007282737.1|	-	0.00077	19.1	0.0	0.0013	18.3	0.0	1.4	1	0	0	1	1	1	1	Mnd1	family
Penicillinase_R	PF03965.11	gi|433593251|ref|YP_007282737.1|	-	0.0023	17.9	0.0	0.004	17.2	0.0	1.7	1	1	0	1	1	1	1	Penicillinase	repressor
EAP30	PF04157.11	gi|433593251|ref|YP_007282737.1|	-	0.0028	16.8	0.2	0.36	9.9	0.0	2.1	2	0	0	2	2	2	2	EAP30/Vps36	family
HTH_24	PF13412.1	gi|433593251|ref|YP_007282737.1|	-	0.0029	16.9	0.0	0.0077	15.6	0.0	1.7	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
GPP34	PF05719.6	gi|433593251|ref|YP_007282737.1|	-	0.0036	17.3	1.6	0.007	16.4	0.8	1.5	1	1	0	1	1	1	1	Golgi	phosphoprotein	3	(GPP34)
GntR	PF00392.16	gi|433593251|ref|YP_007282737.1|	-	0.0057	16.0	0.0	0.014	14.8	0.0	1.6	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
TBPIP	PF07106.8	gi|433593251|ref|YP_007282737.1|	-	0.016	14.7	0.0	0.022	14.3	0.0	1.1	1	0	0	1	1	1	0	Tat	binding	protein	1(TBP-1)-interacting	protein	(TBPIP)
TrmB	PF01978.14	gi|433593251|ref|YP_007282737.1|	-	0.017	14.7	0.0	0.035	13.8	0.0	1.5	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
HR1	PF02185.11	gi|433593251|ref|YP_007282737.1|	-	0.11	12.2	0.0	0.25	11.1	0.0	1.5	1	0	0	1	1	1	0	Hr1	repeat
PspB	PF06667.7	gi|433593251|ref|YP_007282737.1|	-	0.37	10.7	4.2	7.1	6.6	0.2	2.9	3	0	0	3	3	3	0	Phage	shock	protein	B
DDE_Tnp_1	PF01609.16	gi|433593253|ref|YP_007282739.1|	-	1e-06	28.4	0.0	1.7e-06	27.7	0.0	1.3	1	0	0	1	1	1	1	Transposase	DDE	domain
Na_K-ATPase	PF00287.13	gi|433593253|ref|YP_007282739.1|	-	0.11	11.3	0.1	0.25	10.0	0.1	1.5	1	0	0	1	1	1	0	Sodium	/	potassium	ATPase	beta	chain
SymE_toxin	PF08845.5	gi|433593254|ref|YP_007282740.1|	-	0.0011	18.8	0.0	0.0012	18.6	0.0	1.1	1	0	0	1	1	1	1	Toxin	SymE,	type	I	toxin-antitoxin	system
Antitoxin-MazE	PF04014.13	gi|433593254|ref|YP_007282740.1|	-	0.012	15.3	0.1	0.016	14.9	0.0	1.2	1	0	0	1	1	1	0	Antidote-toxin	recognition	MazE
AA_permease_2	PF13520.1	gi|433593256|ref|YP_007282742.1|	-	5.6e-56	189.8	47.7	6.9e-56	189.5	33.0	1.1	1	0	0	1	1	1	1	Amino	acid	permease
AA_permease	PF00324.16	gi|433593256|ref|YP_007282742.1|	-	8.2e-47	159.6	43.8	1e-46	159.3	30.4	1.1	1	0	0	1	1	1	1	Amino	acid	permease
Spore_permease	PF03845.8	gi|433593256|ref|YP_007282742.1|	-	3.4e-06	25.9	8.6	8.2e-06	24.6	6.0	1.6	1	0	0	1	1	1	1	Spore	germination	protein
AA_permease_C	PF13906.1	gi|433593256|ref|YP_007282742.1|	-	5.4e-05	22.9	6.7	5.4e-05	22.9	4.7	3.6	5	0	0	5	5	5	1	C-terminus	of	AA_permease
TrkA_N	PF02254.13	gi|433593257|ref|YP_007282743.1|	-	2.7e-23	82.1	0.3	4.6e-23	81.4	0.2	1.4	1	0	0	1	1	1	1	TrkA-N	domain
TrkA_C	PF02080.16	gi|433593257|ref|YP_007282743.1|	-	8.7e-06	25.2	0.5	5.2e-05	22.7	0.0	2.4	2	1	0	2	2	2	1	TrkA-C	domain
UDPG_MGDP_dh_N	PF03721.9	gi|433593257|ref|YP_007282743.1|	-	1.7e-05	24.3	0.1	5.2e-05	22.7	0.0	1.8	2	0	0	2	2	2	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
Pyr_redox_2	PF07992.9	gi|433593257|ref|YP_007282743.1|	-	4.3e-05	23.4	0.1	5.1e-05	23.2	0.1	1.3	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_7	PF13241.1	gi|433593257|ref|YP_007282743.1|	-	0.00088	19.4	0.1	0.0015	18.7	0.0	1.4	1	1	0	1	1	1	1	Putative	NAD(P)-binding
FAD_binding_3	PF01494.14	gi|433593257|ref|YP_007282743.1|	-	0.006	15.6	0.0	0.0078	15.2	0.0	1.2	1	0	0	1	1	1	1	FAD	binding	domain
DAO	PF01266.19	gi|433593257|ref|YP_007282743.1|	-	0.0064	15.4	0.1	0.012	14.5	0.0	1.3	1	1	0	1	1	1	1	FAD	dependent	oxidoreductase
Pyr_redox	PF00070.22	gi|433593257|ref|YP_007282743.1|	-	0.01	16.2	0.0	0.023	15.0	0.0	1.7	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
B12-binding	PF02310.14	gi|433593257|ref|YP_007282743.1|	-	0.02	14.7	1.1	0.14	12.0	0.1	2.5	1	1	1	2	2	2	0	B12	binding	domain
NAD_binding_8	PF13450.1	gi|433593257|ref|YP_007282743.1|	-	0.035	14.1	0.0	0.19	11.7	0.0	2.2	3	0	0	3	3	3	0	NAD(P)-binding	Rossmann-like	domain
Glyco_transf_4	PF13439.1	gi|433593257|ref|YP_007282743.1|	-	0.061	13.0	0.1	0.26	10.9	0.0	1.9	1	1	1	2	2	2	0	Glycosyltransferase	Family	4
Zip	PF02535.17	gi|433593258|ref|YP_007282744.1|	-	4.3e-21	75.2	19.4	1.4e-19	70.2	4.3	2.5	2	1	0	2	2	2	2	ZIP	Zinc	transporter
Aconitase	PF00330.15	gi|433593259|ref|YP_007282745.1|	-	6.8e-139	463.3	0.0	8.3e-139	463.0	0.0	1.1	1	0	0	1	1	1	1	Aconitase	family	(aconitate	hydratase)
Aconitase_C	PF00694.14	gi|433593259|ref|YP_007282745.1|	-	6.3e-41	139.5	0.0	1.2e-40	138.6	0.0	1.5	1	0	0	1	1	1	1	Aconitase	C-terminal	domain
Usp	PF00582.21	gi|433593261|ref|YP_007282747.1|	-	1.9e-21	76.7	1.9	2.6e-21	76.3	1.3	1.2	1	0	0	1	1	1	1	Universal	stress	protein	family
Na_Ca_ex	PF01699.19	gi|433593262|ref|YP_007282748.1|	-	1.7e-22	79.5	24.0	2e-12	46.8	4.3	2.1	2	0	0	2	2	2	2	Sodium/calcium	exchanger	protein
Foie-gras_1	PF11817.3	gi|433593263|ref|YP_007282749.1|	-	0.0065	15.9	0.2	0.0088	15.5	0.1	1.1	1	0	0	1	1	1	1	Foie	gras	liver	health	family	1
AAA_23	PF13476.1	gi|433593264|ref|YP_007282750.1|	-	5e-09	36.7	29.5	0.035	14.4	20.4	4.0	1	1	0	1	1	1	1	AAA	domain
AAA_13	PF13166.1	gi|433593264|ref|YP_007282750.1|	-	2.1e-08	33.1	28.4	6.9e-07	28.1	8.2	2.6	1	1	2	3	3	3	3	AAA	domain
Reo_sigmaC	PF04582.7	gi|433593264|ref|YP_007282750.1|	-	7.8e-07	28.5	15.1	0.00024	20.4	3.0	3.3	2	1	2	4	4	3	2	Reovirus	sigma	C	capsid	protein
TBPIP	PF07106.8	gi|433593264|ref|YP_007282750.1|	-	3.7e-06	26.5	37.8	0.0045	16.5	1.8	5.9	2	2	4	6	6	6	2	Tat	binding	protein	1(TBP-1)-interacting	protein	(TBPIP)
CENP-F_leu_zip	PF10473.4	gi|433593264|ref|YP_007282750.1|	-	1.5e-05	24.8	57.3	0.0077	16.1	7.0	5.1	1	1	4	5	5	5	2	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
Spc7	PF08317.6	gi|433593264|ref|YP_007282750.1|	-	2.4e-05	23.1	42.5	0.0014	17.3	9.8	3.9	1	1	3	4	4	4	2	Spc7	kinetochore	protein
IncA	PF04156.9	gi|433593264|ref|YP_007282750.1|	-	2.5e-05	23.9	63.9	0.0013	18.3	10.6	4.4	1	1	2	3	3	2	2	IncA	protein
GAS	PF13851.1	gi|433593264|ref|YP_007282750.1|	-	0.00012	21.3	40.1	0.7	9.0	3.9	4.1	2	2	1	3	3	3	3	Growth-arrest	specific	micro-tubule	binding
FliJ	PF02050.11	gi|433593264|ref|YP_007282750.1|	-	0.00022	21.2	27.9	0.0026	17.8	2.6	5.8	3	2	3	6	6	5	2	Flagellar	FliJ	protein
Atg14	PF10186.4	gi|433593264|ref|YP_007282750.1|	-	0.00032	19.7	35.2	0.017	14.1	10.2	3.2	1	1	1	2	2	2	2	UV	radiation	resistance	protein	and	autophagy-related	subunit	14
Prefoldin_2	PF01920.15	gi|433593264|ref|YP_007282750.1|	-	0.00041	20.0	46.9	1	9.1	0.8	7.5	3	2	1	5	5	5	1	Prefoldin	subunit
Tropomyosin_1	PF12718.2	gi|433593264|ref|YP_007282750.1|	-	0.00067	19.5	61.5	0.029	14.2	4.2	4.5	2	2	2	4	4	4	3	Tropomyosin	like
Baculo_PEP_C	PF04513.7	gi|433593264|ref|YP_007282750.1|	-	0.00079	19.2	19.6	0.17	11.7	2.9	5.0	3	2	2	5	5	4	2	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
ATG16	PF08614.6	gi|433593264|ref|YP_007282750.1|	-	0.001	18.9	52.2	0.01	15.6	11.1	4.7	2	2	3	5	5	5	2	Autophagy	protein	16	(ATG16)
DUF3584	PF12128.3	gi|433593264|ref|YP_007282750.1|	-	0.0029	15.0	49.5	0.31	8.3	14.8	3.4	1	1	1	3	3	3	2	Protein	of	unknown	function	(DUF3584)
TPR_MLP1_2	PF07926.7	gi|433593264|ref|YP_007282750.1|	-	0.0035	17.0	42.3	1.3	8.7	2.3	4.8	1	1	2	3	3	3	1	TPR/MLP1/MLP2-like	protein
Seryl_tRNA_N	PF02403.17	gi|433593264|ref|YP_007282750.1|	-	0.0039	17.1	9.2	0.0039	17.1	6.4	4.9	3	2	3	6	6	5	1	Seryl-tRNA	synthetase	N-terminal	domain
TMF_DNA_bd	PF12329.3	gi|433593264|ref|YP_007282750.1|	-	0.0044	16.8	6.5	0.0044	16.8	4.5	7.1	4	2	2	6	6	4	2	TATA	element	modulatory	factor	1	DNA	binding
Prefoldin	PF02996.12	gi|433593264|ref|YP_007282750.1|	-	0.0048	16.5	38.8	0.58	9.8	0.9	7.2	2	2	6	8	8	8	4	Prefoldin	subunit
NPV_P10	PF05531.7	gi|433593264|ref|YP_007282750.1|	-	0.0068	16.6	19.5	0.47	10.7	0.5	6.3	3	2	3	6	6	6	1	Nucleopolyhedrovirus	P10	protein
BLOC1_2	PF10046.4	gi|433593264|ref|YP_007282750.1|	-	0.0071	16.4	28.5	0.38	10.9	1.4	5.7	2	2	4	6	6	6	2	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
TMF_TATA_bd	PF12325.3	gi|433593264|ref|YP_007282750.1|	-	0.011	15.3	56.2	0.16	11.6	1.6	5.4	1	1	4	5	5	5	0	TATA	element	modulatory	factor	1	TATA	binding
MscS_porin	PF12795.2	gi|433593264|ref|YP_007282750.1|	-	0.014	14.7	48.0	0.013	14.8	12.5	3.8	2	2	0	2	2	2	0	Mechanosensitive	ion	channel	porin	domain
COG2	PF06148.6	gi|433593264|ref|YP_007282750.1|	-	0.014	15.2	26.6	0.035	13.9	1.2	5.5	1	1	3	5	5	5	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
Mnd1	PF03962.10	gi|433593264|ref|YP_007282750.1|	-	0.026	14.1	41.8	0.25	10.9	8.1	4.6	1	1	4	5	5	5	0	Mnd1	family
Laminin_II	PF06009.7	gi|433593264|ref|YP_007282750.1|	-	0.028	14.1	26.2	0.21	11.3	3.3	4.8	3	2	4	7	7	6	0	Laminin	Domain	II
AAA_27	PF13514.1	gi|433593264|ref|YP_007282750.1|	-	0.031	11.9	51.9	0.045	11.4	15.2	2.4	1	1	0	2	2	2	0	AAA	domain
APG6	PF04111.7	gi|433593264|ref|YP_007282750.1|	-	0.033	13.2	52.7	0.032	13.2	9.5	4.1	1	1	2	4	4	4	0	Autophagy	protein	Apg6
AAA_21	PF13304.1	gi|433593264|ref|YP_007282750.1|	-	0.048	13.6	0.1	0.13	12.1	0.0	1.8	1	0	0	1	1	1	0	AAA	domain
DUF342	PF03961.8	gi|433593264|ref|YP_007282750.1|	-	0.11	10.9	32.1	1.3	7.3	1.3	4.1	1	1	2	4	4	4	0	Protein	of	unknown	function	(DUF342)
Fib_alpha	PF08702.5	gi|433593264|ref|YP_007282750.1|	-	0.17	12.0	19.8	0.34	11.0	2.3	4.2	1	1	2	4	4	4	0	Fibrinogen	alpha/beta	chain	family
Spc24	PF08286.6	gi|433593264|ref|YP_007282750.1|	-	0.18	11.5	46.7	1.1	8.9	1.9	7.4	2	2	5	7	7	7	0	Spc24	subunit	of	Ndc80
Cortex-I_coil	PF09304.5	gi|433593264|ref|YP_007282750.1|	-	0.2	11.7	47.9	1.1	9.2	4.9	5.3	1	1	4	6	6	6	0	Cortexillin	I,	coiled	coil
HsbA	PF12296.3	gi|433593264|ref|YP_007282750.1|	-	0.24	11.2	1.8	1.8	8.4	0.0	3.2	3	1	0	3	3	2	0	Hydrophobic	surface	binding	protein	A
DUF2353	PF09789.4	gi|433593264|ref|YP_007282750.1|	-	0.34	10.1	43.2	0.31	10.2	2.6	4.1	2	1	0	2	2	1	0	Uncharacterized	coiled-coil	protein	(DUF2353)
WEMBL	PF05701.6	gi|433593264|ref|YP_007282750.1|	-	0.36	9.2	48.0	0.13	10.7	9.7	3.2	1	1	3	4	4	4	0	Weak	chloroplast	movement	under	blue	light
FlxA	PF14282.1	gi|433593264|ref|YP_007282750.1|	-	0.39	10.6	24.0	1.9	8.4	1.8	5.3	2	2	3	5	5	5	0	FlxA-like	protein
DUF4200	PF13863.1	gi|433593264|ref|YP_007282750.1|	-	0.42	10.5	51.9	0.44	10.5	6.1	6.2	3	3	3	6	6	6	0	Domain	of	unknown	function	(DUF4200)
Filament	PF00038.16	gi|433593264|ref|YP_007282750.1|	-	0.57	9.6	51.0	4.9	6.5	23.2	4.0	1	1	0	3	3	3	0	Intermediate	filament	protein
DivIC	PF04977.10	gi|433593264|ref|YP_007282750.1|	-	0.64	9.5	54.1	0.38	10.2	1.2	8.1	4	2	4	8	8	8	0	Septum	formation	initiator
ERM	PF00769.14	gi|433593264|ref|YP_007282750.1|	-	0.68	9.4	49.0	0.21	11.0	15.9	3.3	2	2	0	2	2	2	0	Ezrin/radixin/moesin	family
PilJ	PF13675.1	gi|433593264|ref|YP_007282750.1|	-	0.91	9.8	30.8	30	4.9	3.8	5.7	1	1	3	4	4	4	0	Type	IV	pili	methyl-accepting	chemotaxis	transducer	N-term
Phage_GP20	PF06810.6	gi|433593264|ref|YP_007282750.1|	-	1	8.7	40.1	0.28	10.6	0.7	5.4	2	2	3	5	5	5	0	Phage	minor	structural	protein	GP20
DUF972	PF06156.8	gi|433593264|ref|YP_007282750.1|	-	1.2	9.5	29.2	3.5	8.0	0.9	5.3	2	2	2	4	4	4	0	Protein	of	unknown	function	(DUF972)
DUF812	PF05667.6	gi|433593264|ref|YP_007282750.1|	-	1.4	7.3	39.5	0.032	12.7	11.8	2.8	1	1	1	3	3	3	0	Protein	of	unknown	function	(DUF812)
Myosin_tail_1	PF01576.14	gi|433593264|ref|YP_007282750.1|	-	1.5	6.4	66.7	6.1	4.4	18.9	2.5	1	1	1	2	2	2	0	Myosin	tail
FlaC_arch	PF05377.6	gi|433593264|ref|YP_007282750.1|	-	2.5	8.0	37.6	4.2	7.3	0.3	8.4	6	3	3	9	9	9	0	Flagella	accessory	protein	C	(FlaC)
DUF745	PF05335.8	gi|433593264|ref|YP_007282750.1|	-	2.6	7.5	12.5	0.39	10.2	1.3	3.6	2	2	1	4	4	4	0	Protein	of	unknown	function	(DUF745)
Syntaxin-6_N	PF09177.6	gi|433593264|ref|YP_007282750.1|	-	2.7	8.4	38.7	0.78	10.1	2.3	5.7	2	2	3	5	5	5	0	Syntaxin	6,	N-terminal
ApoO	PF09769.4	gi|433593264|ref|YP_007282750.1|	-	3.2	7.4	7.8	3	7.5	0.5	3.6	2	2	1	3	3	3	0	Apolipoprotein	O
Nup54	PF13874.1	gi|433593264|ref|YP_007282750.1|	-	5.5	6.6	25.1	0.23	11.1	4.7	4.4	2	2	2	4	4	4	0	Nucleoporin	complex	subunit	54
DUF2730	PF10805.3	gi|433593264|ref|YP_007282750.1|	-	6.1	6.6	34.3	5	6.9	1.6	4.9	3	1	2	5	5	5	0	Protein	of	unknown	function	(DUF2730)
DUF1664	PF07889.7	gi|433593264|ref|YP_007282750.1|	-	7	6.4	24.1	2.1	8.1	1.7	4.8	3	2	3	6	6	6	0	Protein	of	unknown	function	(DUF1664)
DegS	PF05384.6	gi|433593264|ref|YP_007282750.1|	-	7.7	5.7	41.5	0.39	9.9	10.3	5.3	4	2	0	4	4	3	0	Sensor	protein	DegS
DUF948	PF06103.6	gi|433593264|ref|YP_007282750.1|	-	7.8	6.4	14.0	12	5.8	0.2	4.9	2	2	2	4	4	4	0	Bacterial	protein	of	unknown	function	(DUF948)
DDE_Tnp_1	PF01609.16	gi|433593265|ref|YP_007282751.1|	-	3e-16	59.6	1.8	1.6e-15	57.2	1.3	1.8	1	1	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_1_2	PF13586.1	gi|433593265|ref|YP_007282751.1|	-	9.7e-05	22.4	0.0	0.00022	21.3	0.0	1.6	1	0	0	1	1	1	1	Transposase	DDE	domain
TBP	PF00352.16	gi|433593266|ref|YP_007282752.1|	-	1.4e-59	197.3	0.0	1.2e-29	101.4	0.0	2.0	2	0	0	2	2	2	2	Transcription	factor	TFIID	(or	TATA-binding	protein,	TBP)
DUF3378	PF11858.3	gi|433593266|ref|YP_007282752.1|	-	0.00014	21.8	0.0	0.5	10.4	0.0	2.2	2	0	0	2	2	2	2	Domain	of	unknown	function	(DUF3378)
Iso_dh	PF00180.15	gi|433593267|ref|YP_007282753.1|	-	1.6e-107	359.5	0.0	1.9e-107	359.2	0.0	1.1	1	0	0	1	1	1	1	Isocitrate/isopropylmalate	dehydrogenase
Aconitase	PF00330.15	gi|433593269|ref|YP_007282755.1|	-	8.3e-100	334.4	0.3	2e-69	234.3	0.0	2.1	1	1	1	2	2	2	2	Aconitase	family	(aconitate	hydratase)
Aconitase_C	PF00694.14	gi|433593269|ref|YP_007282755.1|	-	8.1e-21	74.4	0.0	1.5e-20	73.6	0.0	1.4	1	0	0	1	1	1	1	Aconitase	C-terminal	domain
DUF521	PF04412.8	gi|433593269|ref|YP_007282755.1|	-	0.044	12.3	0.0	0.068	11.7	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF521)
Barwin	PF00967.12	gi|433593269|ref|YP_007282755.1|	-	0.045	13.4	0.0	0.12	12.1	0.0	1.7	1	0	0	1	1	1	0	Barwin	family
Hist_deacetyl	PF00850.14	gi|433593271|ref|YP_007282757.1|	-	1.4e-83	280.7	0.0	1.9e-83	280.3	0.0	1.1	1	0	0	1	1	1	1	Histone	deacetylase	domain
UPF0058	PF01893.11	gi|433593272|ref|YP_007282758.1|	-	4.7e-17	61.8	0.1	5.2e-17	61.6	0.0	1.0	1	0	0	1	1	1	1	Uncharacterised	protein	family	UPF0058
DDE_Tnp_IS240	PF13610.1	gi|433593273|ref|YP_007282759.1|	-	1.8e-14	53.9	0.0	2.3e-14	53.5	0.0	1.2	1	0	0	1	1	1	1	DDE	domain
DDE_Tnp_IS66	PF03050.9	gi|433593273|ref|YP_007282759.1|	-	0.00086	18.6	0.5	0.007	15.6	0.4	2.3	1	1	0	1	1	1	1	Transposase	IS66	family
rve	PF00665.21	gi|433593273|ref|YP_007282759.1|	-	0.0025	17.8	0.1	0.0049	16.9	0.1	1.4	1	0	0	1	1	1	1	Integrase	core	domain
Transposase_mut	PF00872.13	gi|433593273|ref|YP_007282759.1|	-	0.012	14.1	0.1	0.24	9.8	0.0	2.2	2	0	0	2	2	2	0	Transposase,	Mutator	family
DDE_Tnp_1_2	PF13586.1	gi|433593273|ref|YP_007282759.1|	-	0.064	13.4	0.1	0.13	12.5	0.1	1.7	1	0	0	1	1	1	0	Transposase	DDE	domain
AAA_22	PF13401.1	gi|433593273|ref|YP_007282759.1|	-	0.082	13.0	0.2	0.19	11.8	0.1	1.6	1	1	0	1	1	1	0	AAA	domain
TMEM71	PF15121.1	gi|433593273|ref|YP_007282759.1|	-	0.09	12.5	0.1	0.18	11.5	0.1	1.4	1	0	0	1	1	1	0	TMEM71	protein	family
DDE_Tnp_1	PF01609.16	gi|433593273|ref|YP_007282759.1|	-	0.19	11.2	1.5	5.5	6.4	0.3	2.1	1	1	1	2	2	2	0	Transposase	DDE	domain
Zip	PF02535.17	gi|433593274|ref|YP_007282760.1|	-	8.8e-23	80.7	10.2	5.5e-18	65.0	3.6	2.0	1	1	1	2	2	2	2	ZIP	Zinc	transporter
YhhN	PF07947.9	gi|433593274|ref|YP_007282760.1|	-	0.1	11.9	0.2	0.1	11.9	0.2	2.5	3	1	0	3	3	3	0	YhhN-like	protein
GtrA	PF04138.9	gi|433593274|ref|YP_007282760.1|	-	0.17	11.8	0.2	0.17	11.8	0.1	2.5	2	1	0	3	3	3	0	GtrA-like	protein
CTV_P6	PF06706.6	gi|433593274|ref|YP_007282760.1|	-	1.3	8.5	4.1	7	6.2	0.1	2.9	2	0	0	2	2	2	0	Citrus	tristeza	virus	6-kDa	protein
Form_Nir_trans	PF01226.12	gi|433593275|ref|YP_007282761.1|	-	3.4e-48	163.7	20.2	3.9e-48	163.5	14.0	1.0	1	0	0	1	1	1	1	Formate/nitrite	transporter
DUF202	PF02656.10	gi|433593276|ref|YP_007282762.1|	-	2.9e-08	33.8	7.7	5.8e-08	32.8	5.4	1.5	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF202)
DUF1212	PF06738.7	gi|433593276|ref|YP_007282762.1|	-	0.0011	18.5	0.2	0.0012	18.3	0.2	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1212)
DUF1469	PF07332.6	gi|433593276|ref|YP_007282762.1|	-	0.011	15.4	0.1	0.015	15.0	0.1	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1469)
CAAD	PF14159.1	gi|433593276|ref|YP_007282762.1|	-	0.015	14.9	0.1	0.018	14.6	0.0	1.1	1	0	0	1	1	1	0	CAAD	domains	of	cyanobacterial	aminoacyl-tRNA	synthetase
BacA	PF02673.13	gi|433593276|ref|YP_007282762.1|	-	0.025	13.7	0.0	0.026	13.6	0.0	1.0	1	0	0	1	1	1	0	Bacitracin	resistance	protein	BacA
DUF2721	PF11026.3	gi|433593276|ref|YP_007282762.1|	-	0.078	12.6	0.4	0.087	12.4	0.3	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2721)
ABC2_membrane_3	PF12698.2	gi|433593276|ref|YP_007282762.1|	-	0.12	11.3	1.3	0.14	11.1	0.9	1.1	1	0	0	1	1	1	0	ABC-2	family	transporter	protein
UPF0029	PF01205.14	gi|433593277|ref|YP_007282763.1|	-	3.4e-32	110.3	0.0	4.8e-32	109.9	0.0	1.2	1	0	0	1	1	1	1	Uncharacterized	protein	family	UPF0029
DUF1949	PF09186.6	gi|433593277|ref|YP_007282763.1|	-	5.6e-11	41.8	1.1	1.5e-10	40.4	0.1	2.0	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF1949)
EFG_C	PF00679.19	gi|433593277|ref|YP_007282763.1|	-	0.012	15.4	0.0	0.022	14.6	0.0	1.4	1	0	0	1	1	1	0	Elongation	factor	G	C-terminus
PTA_PTB	PF01515.14	gi|433593278|ref|YP_007282764.1|	-	2e-92	309.7	0.1	2.7e-92	309.2	0.1	1.2	1	0	0	1	1	1	1	Phosphate	acetyl/butaryl	transferase
Malic_M	PF03949.10	gi|433593278|ref|YP_007282764.1|	-	2.2e-67	227.3	0.1	4e-67	226.4	0.1	1.5	1	0	0	1	1	1	1	Malic	enzyme,	NAD	binding	domain
malic	PF00390.14	gi|433593278|ref|YP_007282764.1|	-	3.2e-29	101.7	0.0	6.9e-27	94.2	0.0	2.4	1	1	0	1	1	1	1	Malic	enzyme,	N-terminal	domain
Hydrolase	PF00702.21	gi|433593278|ref|YP_007282764.1|	-	0.055	13.8	2.4	0.12	12.7	0.6	2.4	2	1	0	2	2	2	0	haloacid	dehalogenase-like	hydrolase
Acyl-CoA_dh_C	PF12806.2	gi|433593278|ref|YP_007282764.1|	-	0.39	10.5	3.8	8.2	6.3	0.1	2.5	2	0	0	2	2	2	0	Acetyl-CoA	dehydrogenase	C-terminal	like
zinc_ribbon_5	PF13719.1	gi|433593279|ref|YP_007282765.1|	-	0.0062	16.0	0.6	0.14	11.7	0.0	2.1	2	0	0	2	2	2	1	zinc-ribbon	domain
zinc_ribbon_4	PF13717.1	gi|433593279|ref|YP_007282765.1|	-	0.028	14.1	0.9	0.67	9.6	0.0	2.1	2	0	0	2	2	2	0	zinc-ribbon	domain
DNA_RNApol_7kD	PF03604.8	gi|433593279|ref|YP_007282765.1|	-	0.1	12.1	0.1	0.19	11.2	0.0	1.6	2	0	0	2	2	2	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
ILVD_EDD	PF00920.16	gi|433593280|ref|YP_007282766.1|	-	1.5e-205	683.5	0.3	1.7e-205	683.3	0.2	1.0	1	0	0	1	1	1	1	Dehydratase	family
CitMHS	PF03600.11	gi|433593281|ref|YP_007282767.1|	-	2.1e-36	125.2	22.7	2.1e-36	125.2	15.7	1.9	1	1	1	2	2	2	2	Citrate	transporter
ArsB	PF02040.10	gi|433593281|ref|YP_007282767.1|	-	1.3e-10	40.8	23.8	3.4e-10	39.4	16.5	1.7	1	1	0	1	1	1	1	Arsenical	pump	membrane	protein
Phage_holin_5	PF06946.6	gi|433593281|ref|YP_007282767.1|	-	0.00097	19.2	1.4	0.0039	17.3	0.4	2.4	1	1	1	2	2	2	1	Phage	holin
CbiA	PF01656.18	gi|433593283|ref|YP_007282769.1|	-	5.8e-23	81.3	0.0	8.1e-23	80.8	0.0	1.2	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_31	PF13614.1	gi|433593283|ref|YP_007282769.1|	-	5.3e-10	39.4	0.0	3.8e-09	36.6	0.0	2.2	1	1	0	1	1	1	1	AAA	domain
YhjQ	PF06564.7	gi|433593283|ref|YP_007282769.1|	-	1.2e-08	34.5	0.0	1.7e-08	34.1	0.0	1.2	1	0	0	1	1	1	1	YhjQ	protein
ArsA_ATPase	PF02374.10	gi|433593283|ref|YP_007282769.1|	-	1.5e-07	30.7	0.0	3.1e-07	29.7	0.0	1.5	1	0	0	1	1	1	1	Anion-transporting	ATPase
MipZ	PF09140.6	gi|433593283|ref|YP_007282769.1|	-	1e-06	28.0	0.1	0.0002	20.5	0.0	2.2	2	0	0	2	2	2	2	ATPase	MipZ
Fer4_NifH	PF00142.13	gi|433593283|ref|YP_007282769.1|	-	3.7e-05	23.0	0.0	0.0019	17.4	0.0	2.3	2	0	0	2	2	2	1	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
VirC1	PF07015.6	gi|433593283|ref|YP_007282769.1|	-	0.0026	16.8	0.1	0.024	13.7	0.0	2.1	2	0	0	2	2	2	1	VirC1	protein
AAA_25	PF13481.1	gi|433593283|ref|YP_007282769.1|	-	0.0045	16.4	0.0	0.0098	15.3	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
AAA_17	PF13207.1	gi|433593283|ref|YP_007282769.1|	-	0.014	16.2	0.0	0.025	15.3	0.0	1.8	1	1	0	1	1	1	0	AAA	domain
APS_kinase	PF01583.15	gi|433593283|ref|YP_007282769.1|	-	0.061	12.9	0.0	0.12	12.0	0.0	1.4	1	0	0	1	1	1	0	Adenylylsulphate	kinase
AAA_18	PF13238.1	gi|433593283|ref|YP_007282769.1|	-	0.067	13.4	0.0	0.21	11.8	0.0	1.8	2	0	0	2	2	2	0	AAA	domain
ArgK	PF03308.11	gi|433593283|ref|YP_007282769.1|	-	0.068	11.9	0.0	0.1	11.3	0.0	1.2	1	0	0	1	1	1	0	ArgK	protein
Methyltransf_26	PF13659.1	gi|433593283|ref|YP_007282769.1|	-	0.074	13.0	0.0	0.17	11.9	0.0	1.6	1	1	0	1	1	1	0	Methyltransferase	domain
AAA_10	PF12846.2	gi|433593283|ref|YP_007282769.1|	-	0.099	12.0	0.0	0.12	11.8	0.0	1.4	1	1	0	1	1	1	0	AAA-like	domain
UvrD-helicase	PF00580.16	gi|433593284|ref|YP_007282770.1|	-	2.1e-61	207.9	0.0	4.8e-61	206.7	0.0	1.6	1	1	0	1	1	1	1	UvrD/REP	helicase	N-terminal	domain
UvrD_C	PF13361.1	gi|433593284|ref|YP_007282770.1|	-	2.4e-39	135.7	0.0	5e-39	134.7	0.0	1.5	1	1	0	1	1	1	1	UvrD-like	helicase	C-terminal	domain
PDDEXK_1	PF12705.2	gi|433593284|ref|YP_007282770.1|	-	4.1e-12	46.0	0.1	2.1e-11	43.7	0.0	2.3	1	0	0	1	1	1	1	PD-(D/E)XK	nuclease	superfamily
AAA_19	PF13245.1	gi|433593284|ref|YP_007282770.1|	-	2.9e-11	42.9	0.1	1.2e-10	40.9	0.1	2.1	1	0	0	1	1	1	1	Part	of	AAA	domain
UvrD_C_2	PF13538.1	gi|433593284|ref|YP_007282770.1|	-	2.6e-10	40.3	0.5	2.6e-05	24.2	0.0	3.1	3	0	0	3	3	3	2	UvrD-like	helicase	C-terminal	domain
AAA_30	PF13604.1	gi|433593284|ref|YP_007282770.1|	-	5.9e-07	29.2	0.3	0.00019	21.0	0.0	2.6	2	0	0	2	2	2	2	AAA	domain
Viral_helicase1	PF01443.13	gi|433593284|ref|YP_007282770.1|	-	0.00013	21.5	0.3	5.9	6.3	0.0	4.2	4	0	0	4	4	4	1	Viral	(Superfamily	1)	RNA	helicase
AAA_11	PF13086.1	gi|433593284|ref|YP_007282770.1|	-	0.001	18.7	0.0	0.73	9.3	0.0	2.3	2	0	0	2	2	2	2	AAA	domain
AAA_22	PF13401.1	gi|433593284|ref|YP_007282770.1|	-	0.004	17.2	0.0	5.5	7.1	0.0	2.9	2	0	0	2	2	2	2	AAA	domain
DUF2800	PF10926.3	gi|433593284|ref|YP_007282770.1|	-	0.0057	15.8	0.0	0.018	14.2	0.0	1.8	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF2800)
DEAD	PF00270.24	gi|433593284|ref|YP_007282770.1|	-	0.058	12.8	0.1	0.17	11.4	0.0	1.7	2	0	0	2	2	2	0	DEAD/DEAH	box	helicase
DUF3945	PF13101.1	gi|433593284|ref|YP_007282770.1|	-	0.25	10.6	0.6	7.5	5.9	0.1	2.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3945)
PDDEXK_1	PF12705.2	gi|433593285|ref|YP_007282771.1|	-	7.4e-38	130.3	0.0	2.3e-36	125.4	0.0	2.3	2	0	0	2	2	2	1	PD-(D/E)XK	nuclease	superfamily
Exonuc_V_gamma	PF04257.9	gi|433593285|ref|YP_007282771.1|	-	7e-09	34.2	0.0	0.00015	19.9	0.0	2.1	2	0	0	2	2	2	2	Exodeoxyribonuclease	V,	gamma	subunit
UvrD_C	PF13361.1	gi|433593285|ref|YP_007282771.1|	-	0.18	11.2	0.0	0.31	10.4	0.0	1.3	1	0	0	1	1	1	0	UvrD-like	helicase	C-terminal	domain
DUF3962	PF13111.1	gi|433593285|ref|YP_007282771.1|	-	0.46	9.8	0.0	0.74	9.1	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3962)
DUF1819	PF08849.6	gi|433593286|ref|YP_007282772.1|	-	6e-07	29.0	0.0	9.1e-07	28.4	0.0	1.1	1	0	0	1	1	1	1	Putative	inner	membrane	protein	(DUF1819)
ABC_tran	PF00005.22	gi|433593287|ref|YP_007282773.1|	-	0.041	14.1	0.3	0.45	10.7	0.0	2.9	3	0	0	3	3	3	0	ABC	transporter
KAP_NTPase	PF07693.9	gi|433593287|ref|YP_007282773.1|	-	0.11	11.5	0.0	0.24	10.3	0.0	1.5	1	0	0	1	1	1	0	KAP	family	P-loop	domain
DUF1515	PF07439.6	gi|433593287|ref|YP_007282773.1|	-	0.13	12.1	5.6	0.12	12.1	0.4	3.1	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF1515)
Syntaxin	PF00804.20	gi|433593287|ref|YP_007282773.1|	-	0.4	10.8	3.1	19	5.4	0.0	3.7	3	0	0	3	3	3	0	Syntaxin
DUF1788	PF08747.6	gi|433593288|ref|YP_007282774.1|	-	3.3e-11	43.1	0.0	4.7e-11	42.6	0.0	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1788)
Bac_DnaA	PF00308.13	gi|433593289|ref|YP_007282775.1|	-	0.019	14.6	0.0	0.05	13.2	0.0	1.7	1	0	0	1	1	1	0	Bacterial	dnaA	protein
Methyltransf_26	PF13659.1	gi|433593291|ref|YP_007282777.1|	-	6.8e-21	74.4	0.1	2.8e-20	72.4	0.0	2.0	1	1	0	1	1	1	1	Methyltransferase	domain
N6_Mtase	PF02384.11	gi|433593291|ref|YP_007282777.1|	-	8.2e-11	41.5	0.0	1.8e-06	27.2	0.0	3.4	3	0	0	3	3	3	2	N-6	DNA	Methylase
Methyltransf_31	PF13847.1	gi|433593291|ref|YP_007282777.1|	-	2.8e-05	23.7	0.0	8.5e-05	22.1	0.0	1.8	2	0	0	2	2	2	1	Methyltransferase	domain
Eco57I	PF07669.6	gi|433593291|ref|YP_007282777.1|	-	0.00053	20.3	0.0	0.0012	19.1	0.0	1.6	1	0	0	1	1	1	1	Eco57I	restriction-modification	methylase
UPF0020	PF01170.13	gi|433593291|ref|YP_007282777.1|	-	0.00063	19.3	0.0	0.024	14.2	0.0	2.4	2	0	0	2	2	2	1	Putative	RNA	methylase	family	UPF0020
HBS1_N	PF08938.5	gi|433593291|ref|YP_007282777.1|	-	0.2	11.7	5.6	0.68	10.0	3.4	2.3	1	1	0	1	1	1	0	HBS1	N-terminus
UPF0184	PF03670.8	gi|433593292|ref|YP_007282778.1|	-	2.4	8.3	6.6	14	5.9	0.0	3.8	4	0	0	4	4	4	0	Uncharacterised	protein	family	(UPF0184)
PglZ	PF08665.7	gi|433593294|ref|YP_007282780.1|	-	2.5e-11	43.5	0.0	4.7e-11	42.6	0.0	1.5	1	0	0	1	1	1	1	PglZ	domain
MA3	PF02847.12	gi|433593294|ref|YP_007282780.1|	-	0.17	11.6	0.0	30	4.3	0.0	2.9	3	0	0	3	3	3	0	MA3	domain
DUF2857	PF11198.3	gi|433593294|ref|YP_007282780.1|	-	0.18	11.2	0.3	0.37	10.2	0.2	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2857)
SNF2_N	PF00176.18	gi|433593295|ref|YP_007282781.1|	-	1.5e-25	89.6	0.0	2e-23	82.6	0.0	2.3	1	1	0	1	1	1	1	SNF2	family	N-terminal	domain
Helicase_C	PF00271.26	gi|433593295|ref|YP_007282781.1|	-	7e-19	67.4	0.0	2.4e-18	65.7	0.0	2.0	1	0	0	1	1	1	1	Helicase	conserved	C-terminal	domain
ResIII	PF04851.10	gi|433593295|ref|YP_007282781.1|	-	5.4e-10	39.3	0.2	2.9e-09	36.9	0.0	2.4	2	0	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
DEAD	PF00270.24	gi|433593295|ref|YP_007282781.1|	-	2e-06	27.4	0.0	8.4e-06	25.3	0.0	2.1	2	0	0	2	2	2	1	DEAD/DEAH	box	helicase
Helicase_C_4	PF13871.1	gi|433593295|ref|YP_007282781.1|	-	7e-05	22.3	5.0	0.00024	20.6	0.0	2.8	3	0	0	3	3	3	1	Helicase_C-like
DUF4611	PF15387.1	gi|433593295|ref|YP_007282781.1|	-	0.0076	16.3	8.6	0.57	10.3	0.4	3.1	2	0	0	2	2	2	2	Domain	of	unknown	function	(DUF4611)
AAA_23	PF13476.1	gi|433593295|ref|YP_007282781.1|	-	0.012	15.9	2.0	0.012	15.9	1.4	3.3	2	1	0	2	2	2	0	AAA	domain
DUF2075	PF09848.4	gi|433593295|ref|YP_007282781.1|	-	0.021	13.8	0.0	0.021	13.8	0.0	3.4	4	1	0	4	4	4	0	Uncharacterized	conserved	protein	(DUF2075)
Pyrophosphatase	PF00719.14	gi|433593295|ref|YP_007282781.1|	-	0.13	11.6	3.2	3.2	7.1	0.2	2.6	2	0	0	2	2	2	0	Inorganic	pyrophosphatase
DDE_Tnp_1	PF01609.16	gi|433593297|ref|YP_007282783.1|	-	1.3e-25	90.1	0.0	1.8e-25	89.7	0.0	1.2	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_2	PF04693.7	gi|433593297|ref|YP_007282783.1|	-	0.0012	17.9	0.1	0.0018	17.3	0.1	1.2	1	0	0	1	1	1	1	Archaeal	putative	transposase	ISC1217
DDE_Tnp_1_2	PF13586.1	gi|433593297|ref|YP_007282783.1|	-	0.0082	16.3	0.0	0.023	14.8	0.0	1.7	1	0	0	1	1	1	1	Transposase	DDE	domain
DUF2249	PF10006.4	gi|433593297|ref|YP_007282783.1|	-	0.022	14.3	0.2	0.067	12.7	0.1	1.9	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2249)
DUF159	PF02586.9	gi|433593298|ref|YP_007282784.1|	-	4.3e-61	206.0	0.0	4.8e-61	205.9	0.0	1.0	1	0	0	1	1	1	1	Uncharacterised	ACR,	COG2135
CorA	PF01544.13	gi|433593301|ref|YP_007282787.1|	-	0.025	13.6	1.5	0.028	13.4	1.0	1.0	1	0	0	1	1	1	0	CorA-like	Mg2+	transporter	protein
Laminin_I	PF06008.9	gi|433593301|ref|YP_007282787.1|	-	0.069	12.4	2.2	0.077	12.2	1.5	1.2	1	0	0	1	1	1	0	Laminin	Domain	I
MutL_C	PF08676.6	gi|433593301|ref|YP_007282787.1|	-	0.082	12.5	0.1	0.1	12.1	0.1	1.2	1	0	0	1	1	1	0	MutL	C	terminal	dimerisation	domain
HSBP1	PF06825.7	gi|433593301|ref|YP_007282787.1|	-	0.1	12.1	0.1	0.18	11.4	0.1	1.3	1	0	0	1	1	1	0	Heat	shock	factor	binding	protein	1
PilJ	PF13675.1	gi|433593301|ref|YP_007282787.1|	-	0.23	11.8	3.7	2.8	8.2	0.1	2.0	1	1	1	2	2	2	0	Type	IV	pili	methyl-accepting	chemotaxis	transducer	N-term
Spectrin	PF00435.16	gi|433593301|ref|YP_007282787.1|	-	0.29	11.4	1.9	5.5	7.3	0.0	2.3	2	1	0	2	2	2	0	Spectrin	repeat
HXXSHH	PF07586.6	gi|433593301|ref|YP_007282787.1|	-	0.33	9.8	2.1	2.8	6.7	0.4	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1552)
DNA_pol_B	PF00136.16	gi|433593302|ref|YP_007282788.1|	-	2.7e-41	141.8	0.0	4.3e-41	141.1	0.0	1.2	1	0	0	1	1	1	1	DNA	polymerase	family	B
Glycos_transf_N	PF04413.11	gi|433593302|ref|YP_007282788.1|	-	0.035	13.2	0.0	0.064	12.4	0.0	1.3	1	0	0	1	1	1	0	3-Deoxy-D-manno-octulosonic-acid	transferase	(kdotransferase)