# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- Cdc6_C PF09079.6 gi|433593058|ref|YP_007282544.1| - 1.4e-15 56.7 0.0 4.2e-15 55.2 0.0 1.8 2 0 0 2 2 2 1 CDC6, C terminal AAA_16 PF13191.1 gi|433593058|ref|YP_007282544.1| - 4e-11 43.2 0.0 1.3e-10 41.5 0.0 1.8 2 0 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|433593058|ref|YP_007282544.1| - 2.3e-10 40.7 0.0 7.7e-10 39.0 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA PF00004.24 gi|433593058|ref|YP_007282544.1| - 1.5e-05 25.2 0.0 5.3e-05 23.4 0.0 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DUF815 PF05673.8 gi|433593058|ref|YP_007282544.1| - 0.0024 16.8 0.0 0.0038 16.1 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_5 PF07728.9 gi|433593058|ref|YP_007282544.1| - 0.0043 16.7 0.0 0.35 10.6 0.0 2.5 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) Sigma54_activat PF00158.21 gi|433593058|ref|YP_007282544.1| - 0.0055 16.1 0.0 0.012 15.1 0.0 1.5 1 0 0 1 1 1 1 Sigma-54 interaction domain ResIII PF04851.10 gi|433593058|ref|YP_007282544.1| - 0.027 14.3 0.0 0.096 12.5 0.0 1.8 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit AAA_17 PF13207.1 gi|433593058|ref|YP_007282544.1| - 0.032 15.0 0.1 0.16 12.8 0.0 2.4 1 1 0 1 1 1 0 AAA domain Terminase_2 PF03592.11 gi|433593058|ref|YP_007282544.1| - 0.044 14.0 0.0 0.13 12.5 0.0 1.8 1 1 0 1 1 1 0 Terminase small subunit RNA_helicase PF00910.17 gi|433593058|ref|YP_007282544.1| - 0.11 12.6 0.0 0.46 10.6 0.0 2.1 1 0 0 1 1 1 0 RNA helicase CSTF2_hinge PF14327.1 gi|433593060|ref|YP_007282546.1| - 0.081 13.0 0.0 0.12 12.4 0.0 1.3 1 0 0 1 1 1 0 Hinge domain of cleavage stimulation factor subunit 2 DUF2274 PF10038.4 gi|433593060|ref|YP_007282546.1| - 0.13 12.4 1.5 6.2 7.0 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2274) MarR_2 PF12802.2 gi|433593061|ref|YP_007282547.1| - 5.3e-15 54.8 1.6 5.9e-08 32.2 0.5 2.7 2 0 0 2 2 2 2 MarR family TrmB PF01978.14 gi|433593061|ref|YP_007282547.1| - 6.4e-09 35.4 0.1 0.00097 18.7 0.0 2.6 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.15 gi|433593061|ref|YP_007282547.1| - 1.1e-08 35.0 0.0 0.0013 18.7 0.0 2.4 2 0 0 2 2 2 2 Transcriptional regulator MarR PF01047.17 gi|433593061|ref|YP_007282547.1| - 4.9e-08 32.5 0.0 0.0043 16.7 0.0 2.5 2 0 0 2 2 2 2 MarR family HTH_27 PF13463.1 gi|433593061|ref|YP_007282547.1| - 2.7e-07 30.7 0.5 6.6e-05 23.1 0.2 2.6 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_29 PF13551.1 gi|433593061|ref|YP_007282547.1| - 3.1e-06 27.2 0.4 0.023 14.8 0.0 2.4 1 1 1 2 2 2 2 Winged helix-turn helix HTH_24 PF13412.1 gi|433593061|ref|YP_007282547.1| - 3.7e-06 26.2 0.1 0.022 14.1 0.0 2.4 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.5 gi|433593061|ref|YP_007282547.1| - 8.8e-06 25.2 0.1 0.099 12.2 0.0 2.8 2 0 0 2 2 2 2 IclR helix-turn-helix domain HTH_23 PF13384.1 gi|433593061|ref|YP_007282547.1| - 1.2e-05 24.7 0.1 0.0066 16.0 0.0 2.8 2 0 0 2 2 2 1 Homeodomain-like domain HTH_20 PF12840.2 gi|433593061|ref|YP_007282547.1| - 0.0001 22.0 0.2 0.31 10.8 0.0 2.6 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_28 PF13518.1 gi|433593061|ref|YP_007282547.1| - 0.00052 19.9 0.1 0.26 11.3 0.0 2.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_38 PF13936.1 gi|433593061|ref|YP_007282547.1| - 0.0011 18.4 0.2 0.36 10.4 0.0 2.9 3 0 0 3 3 3 1 Helix-turn-helix domain GntR PF00392.16 gi|433593061|ref|YP_007282547.1| - 0.002 17.5 0.0 2.2 7.7 0.0 2.6 2 0 0 2 2 2 2 Bacterial regulatory proteins, gntR family Crp PF00325.15 gi|433593061|ref|YP_007282547.1| - 0.0026 17.1 0.7 0.0093 15.4 0.3 2.0 2 0 0 2 2 2 1 Bacterial regulatory proteins, crp family HTH_Crp_2 PF13545.1 gi|433593061|ref|YP_007282547.1| - 0.0029 17.3 0.0 0.27 11.0 0.0 2.6 2 1 0 2 2 2 1 Crp-like helix-turn-helix domain Penicillinase_R PF03965.11 gi|433593061|ref|YP_007282547.1| - 0.0031 17.5 0.0 3.3 7.8 0.0 2.4 2 0 0 2 2 2 2 Penicillinase repressor DUF746 PF05344.6 gi|433593061|ref|YP_007282547.1| - 0.0089 15.5 0.0 0.02 14.4 0.0 1.6 1 0 0 1 1 1 1 Domain of Unknown Function (DUF746) HTH_41 PF14502.1 gi|433593061|ref|YP_007282547.1| - 0.015 14.9 0.0 0.13 11.9 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain GPP34 PF05719.6 gi|433593061|ref|YP_007282547.1| - 0.017 15.2 1.1 0.031 14.3 0.7 1.7 1 1 1 2 2 2 0 Golgi phosphoprotein 3 (GPP34) LZ_Tnp_IS481 PF13011.1 gi|433593061|ref|YP_007282547.1| - 0.03 14.6 0.0 0.068 13.5 0.0 1.6 1 0 0 1 1 1 0 leucine-zipper of insertion element IS481 HTH_5 PF01022.15 gi|433593061|ref|YP_007282547.1| - 0.032 13.9 0.0 6.1 6.5 0.0 2.5 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family HTH_36 PF13730.1 gi|433593061|ref|YP_007282547.1| - 0.037 14.1 0.0 0.87 9.7 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain RPA_C PF08784.6 gi|433593061|ref|YP_007282547.1| - 0.1 13.0 0.0 0.23 11.9 0.0 1.6 1 0 0 1 1 1 0 Replication protein A C terminal Phage_rep_org_N PF09681.5 gi|433593061|ref|YP_007282547.1| - 0.16 11.5 0.0 3.8 7.1 0.0 2.2 2 0 0 2 2 2 0 N-terminal phage replisome organiser (Phage_rep_org_N) DUF2204 PF09970.4 gi|433593062|ref|YP_007282548.1| - 0.001 18.6 0.1 0.18 11.2 0.0 2.3 2 0 0 2 2 2 2 Nucleotidyl transferase of unknown function (DUF2204) HTH_20 PF12840.2 gi|433593062|ref|YP_007282548.1| - 0.0041 16.8 0.1 0.011 15.4 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain PqqD PF05402.7 gi|433593062|ref|YP_007282548.1| - 0.14 12.2 1.5 1.6 8.8 0.0 2.8 2 1 1 3 3 3 0 Coenzyme PQQ synthesis protein D (PqqD) SWIM PF04434.12 gi|433593063|ref|YP_007282549.1| - 0.011 15.1 0.6 0.03 13.7 0.4 1.7 1 1 0 1 1 1 0 SWIM zinc finger DUF955 PF06114.8 gi|433593064|ref|YP_007282550.1| - 0.001 18.7 0.0 0.0018 18.0 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF955) SprT-like PF10263.4 gi|433593064|ref|YP_007282550.1| - 0.0089 15.7 2.2 0.017 14.7 0.0 2.1 2 1 0 2 2 2 1 SprT-like family Peptidase_MA_2 PF13485.1 gi|433593064|ref|YP_007282550.1| - 0.015 15.3 0.0 0.033 14.2 0.0 1.6 1 0 0 1 1 1 0 Peptidase MA superfamily DUF2268 PF10026.4 gi|433593064|ref|YP_007282550.1| - 0.073 12.4 0.0 0.14 11.4 0.0 1.4 1 0 0 1 1 1 0 Predicted Zn-dependent protease (DUF2268) SBF PF01758.11 gi|433593065|ref|YP_007282551.1| - 1.1e-16 60.8 8.6 1.1e-16 60.8 5.9 2.6 2 1 1 3 3 3 1 Sodium Bile acid symporter family GFA PF04828.9 gi|433593067|ref|YP_007282553.1| - 0.064 13.2 0.0 0.29 11.1 0.0 1.9 2 0 0 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme Ribonuc_L-PSP PF01042.16 gi|433593068|ref|YP_007282554.1| - 6.1e-21 74.4 0.0 7.4e-21 74.1 0.0 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP Duffy_binding PF05424.6 gi|433593068|ref|YP_007282554.1| - 0.01 15.6 0.0 0.014 15.2 0.0 1.2 1 0 0 1 1 1 0 Duffy binding domain HTH_20 PF12840.2 gi|433593069|ref|YP_007282555.1| - 5.5e-11 42.0 0.7 1e-10 41.2 0.1 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|433593069|ref|YP_007282555.1| - 4.4e-08 32.6 0.4 8.2e-08 31.7 0.2 1.6 1 1 1 2 2 2 1 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|433593069|ref|YP_007282555.1| - 0.0064 16.1 0.0 0.011 15.4 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB GntR PF00392.16 gi|433593069|ref|YP_007282555.1| - 0.011 15.1 0.0 0.025 14.0 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family MarR_2 PF12802.2 gi|433593069|ref|YP_007282555.1| - 0.017 14.7 0.1 0.063 12.9 0.1 2.1 1 1 0 1 1 1 0 MarR family PaaX PF07848.7 gi|433593069|ref|YP_007282555.1| - 0.022 14.7 0.0 0.037 14.0 0.0 1.5 1 0 0 1 1 1 0 PaaX-like protein HTH_34 PF13601.1 gi|433593069|ref|YP_007282555.1| - 0.046 13.7 0.0 0.095 12.7 0.0 1.5 1 1 0 1 1 1 0 Winged helix DNA-binding domain HTH_27 PF13463.1 gi|433593069|ref|YP_007282555.1| - 0.046 14.0 0.0 0.095 13.0 0.0 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain SBF PF01758.11 gi|433593070|ref|YP_007282556.1| - 1.1e-47 161.8 10.7 1.1e-47 161.8 7.4 2.1 2 0 0 2 2 2 1 Sodium Bile acid symporter family LMWPc PF01451.16 gi|433593071|ref|YP_007282557.1| - 1.6e-28 99.7 0.0 2.1e-28 99.3 0.0 1.2 1 0 0 1 1 1 1 Low molecular weight phosphotyrosine protein phosphatase ACP53EA PF06313.6 gi|433593072|ref|YP_007282558.1| - 0.038 13.9 0.0 0.053 13.4 0.0 1.3 1 1 0 1 1 1 0 Drosophila ACP53EA protein Pyr_redox_dim PF02852.17 gi|433593073|ref|YP_007282559.1| - 7.4e-31 106.4 0.5 1.2e-30 105.7 0.4 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox_2 PF07992.9 gi|433593073|ref|YP_007282559.1| - 1.3e-30 106.8 6.5 9.9e-30 103.9 4.5 2.9 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|433593073|ref|YP_007282559.1| - 5.1e-14 52.4 0.6 2e-13 50.5 0.1 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|433593073|ref|YP_007282559.1| - 9e-06 25.8 0.0 0.00052 20.1 0.0 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|433593073|ref|YP_007282559.1| - 7e-05 21.8 0.6 0.002 17.0 0.1 2.4 1 1 1 2 2 2 1 FAD binding domain FAD_oxidored PF12831.2 gi|433593073|ref|YP_007282559.1| - 0.0047 16.0 2.8 0.0047 16.0 1.9 1.9 2 0 0 2 2 2 1 FAD dependent oxidoreductase K_oxygenase PF13434.1 gi|433593073|ref|YP_007282559.1| - 0.02 13.7 0.0 4.6 6.0 0.0 2.3 1 1 1 2 2 2 0 L-lysine 6-monooxygenase (NADPH-requiring) 3HCDH_N PF02737.13 gi|433593073|ref|YP_007282559.1| - 0.048 13.3 0.6 0.048 13.3 0.4 1.8 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GIDA PF01134.17 gi|433593073|ref|YP_007282559.1| - 0.12 11.1 6.6 0.08 11.7 1.8 2.5 2 1 0 2 2 2 0 Glucose inhibited division protein A HxlR PF01638.12 gi|433593074|ref|YP_007282560.1| - 7.7e-18 63.9 0.0 8.5e-18 63.7 0.0 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix MarR_2 PF12802.2 gi|433593074|ref|YP_007282560.1| - 0.00096 18.7 0.0 0.0015 18.1 0.0 1.3 1 0 0 1 1 1 1 MarR family PadR PF03551.9 gi|433593074|ref|YP_007282560.1| - 0.0014 18.3 0.0 0.0021 17.7 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_20 PF12840.2 gi|433593074|ref|YP_007282560.1| - 0.0027 17.4 0.0 0.004 16.9 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_34 PF13601.1 gi|433593074|ref|YP_007282560.1| - 0.0069 16.3 0.0 0.0096 15.9 0.0 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR PF01047.17 gi|433593074|ref|YP_007282560.1| - 0.0098 15.5 0.1 0.02 14.5 0.0 1.6 2 0 0 2 2 2 1 MarR family DUF3385 PF11865.3 gi|433593074|ref|YP_007282560.1| - 0.029 14.2 0.0 0.034 14.0 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3385) FUR PF01475.14 gi|433593074|ref|YP_007282560.1| - 0.036 13.9 0.0 0.04 13.8 0.0 1.2 1 0 0 1 1 1 0 Ferric uptake regulator family DUF993 PF06187.6 gi|433593076|ref|YP_007282562.1| - 0.0015 17.1 0.1 0.0023 16.5 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF993) YqhG PF11079.3 gi|433593076|ref|YP_007282562.1| - 0.074 11.8 0.3 0.11 11.2 0.2 1.2 1 0 0 1 1 1 0 Bacterial protein YqhG of unknown function TSC22 PF01166.13 gi|433593082|ref|YP_007282568.1| - 0.0053 16.7 0.6 0.0089 15.9 0.4 1.3 1 0 0 1 1 1 1 TSC-22/dip/bun family DUF2564 PF10819.3 gi|433593082|ref|YP_007282568.1| - 0.018 15.1 0.2 0.025 14.6 0.1 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2564) DUF3832 PF12909.2 gi|433593082|ref|YP_007282568.1| - 0.11 12.5 0.2 0.17 11.9 0.1 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3832) zinc_ribbon_2 PF13240.1 gi|433593084|ref|YP_007282570.1| - 0.0044 16.4 1.2 2.1 7.9 0.0 2.3 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.2 gi|433593084|ref|YP_007282570.1| - 0.01 15.6 1.0 0.017 14.9 0.7 1.3 1 0 0 1 1 1 0 Double zinc ribbon Nudix_N_2 PF14803.1 gi|433593084|ref|YP_007282570.1| - 0.02 14.5 1.3 2.8 7.6 0.1 2.5 2 0 0 2 2 2 0 Nudix N-terminal DUF2318 PF10080.4 gi|433593084|ref|YP_007282570.1| - 0.022 14.5 0.1 0.028 14.2 0.0 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2318) DRP PF06044.7 gi|433593084|ref|YP_007282570.1| - 0.032 13.2 0.5 0.054 12.4 0.3 1.4 1 1 0 1 1 1 0 Dam-replacing family GFA PF04828.9 gi|433593084|ref|YP_007282570.1| - 0.032 14.1 1.2 1 9.3 0.2 2.1 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme zinc-ribbons_6 PF07191.7 gi|433593084|ref|YP_007282570.1| - 0.039 13.7 0.1 0.1 12.4 0.3 1.5 2 0 0 2 2 2 0 zinc-ribbons RPA_interact_C PF14768.1 gi|433593084|ref|YP_007282570.1| - 0.05 13.9 0.5 0.071 13.5 0.4 1.2 1 0 0 1 1 1 0 Replication protein A interacting C-terminal zinc_ribbon_4 PF13717.1 gi|433593084|ref|YP_007282570.1| - 0.06 13.0 1.8 2.5 7.8 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|433593084|ref|YP_007282570.1| - 0.074 12.6 1.8 2.7 7.6 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|433593084|ref|YP_007282570.1| - 0.096 11.9 4.9 3.4 7.0 0.5 2.3 1 1 0 2 2 2 0 zinc-ribbon domain Lar_restr_allev PF14354.1 gi|433593084|ref|YP_007282570.1| - 0.1 12.9 3.4 0.3 11.4 2.4 1.8 1 1 0 1 1 1 0 Restriction alleviation protein Lar UPF0547 PF10571.4 gi|433593084|ref|YP_007282570.1| - 0.72 9.5 3.5 4.7 7.0 2.4 2.0 1 1 1 2 2 2 0 Uncharacterised protein family UPF0547 DNA_ligase_ZBD PF03119.11 gi|433593084|ref|YP_007282570.1| - 1.1 8.9 4.0 0.95 9.2 0.3 2.3 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain PhnA_Zn_Ribbon PF08274.7 gi|433593084|ref|YP_007282570.1| - 5.2 6.9 5.5 3.6 7.4 0.6 2.2 2 0 0 2 2 2 0 PhnA Zinc-Ribbon DUF2387 PF09526.5 gi|433593085|ref|YP_007282571.1| - 0.006 16.4 0.2 0.011 15.6 0.1 1.3 1 0 0 1 1 1 1 Probable metal-binding protein (DUF2387) RNA_POL_M_15KD PF02150.11 gi|433593085|ref|YP_007282571.1| - 0.02 14.6 0.3 0.02 14.6 0.2 2.1 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit Elf1 PF05129.8 gi|433593085|ref|YP_007282571.1| - 0.04 13.6 0.0 0.055 13.1 0.0 1.3 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like zf-ribbon_3 PF13248.1 gi|433593085|ref|YP_007282571.1| - 0.24 10.6 1.8 2.8 7.2 0.0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain PRA-PH PF01503.12 gi|433593087|ref|YP_007282573.1| - 0.036 14.3 0.2 0.047 13.9 0.1 1.3 1 0 0 1 1 1 0 Phosphoribosyl-ATP pyrophosphohydrolase E1-E2_ATPase PF00122.15 gi|433593088|ref|YP_007282574.1| - 4.4e-61 205.8 0.1 8.9e-61 204.8 0.0 1.5 1 0 0 1 1 1 1 E1-E2 ATPase Hydrolase PF00702.21 gi|433593088|ref|YP_007282574.1| - 3.4e-47 161.6 5.9 3.4e-47 161.6 4.1 2.3 3 0 0 3 3 3 1 haloacid dehalogenase-like hydrolase HMA PF00403.21 gi|433593088|ref|YP_007282574.1| - 1.1e-15 57.4 0.0 1.2e-14 54.1 0.0 2.6 2 0 0 2 2 2 1 Heavy-metal-associated domain HAD PF12710.2 gi|433593088|ref|YP_007282574.1| - 1e-14 55.1 0.0 2.9e-14 53.6 0.0 1.9 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|433593088|ref|YP_007282574.1| - 0.00053 19.6 0.7 0.0066 16.0 0.3 2.2 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HTH_10 PF04967.7 gi|433593089|ref|YP_007282575.1| - 3.4e-15 55.3 0.0 7.1e-15 54.3 0.0 1.6 1 0 0 1 1 1 1 HTH DNA binding domain MarR_2 PF12802.2 gi|433593089|ref|YP_007282575.1| - 7e-05 22.4 0.0 0.00026 20.5 0.0 2.0 2 0 0 2 2 2 1 MarR family HTH_30 PF13556.1 gi|433593089|ref|YP_007282575.1| - 0.00012 21.5 0.1 0.0004 19.9 0.1 1.9 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain HTH_20 PF12840.2 gi|433593089|ref|YP_007282575.1| - 0.0036 17.0 0.8 0.011 15.4 0.0 2.2 3 0 0 3 3 3 1 Helix-turn-helix domain HTH_8 PF02954.14 gi|433593089|ref|YP_007282575.1| - 0.0038 16.7 0.5 0.0073 15.8 0.0 1.7 2 0 0 2 2 2 1 Bacterial regulatory protein, Fis family HTH_psq PF05225.11 gi|433593089|ref|YP_007282575.1| - 0.015 14.8 0.6 0.058 12.9 0.0 2.1 2 0 0 2 2 2 0 helix-turn-helix, Psq domain HTH_24 PF13412.1 gi|433593089|ref|YP_007282575.1| - 0.016 14.6 0.0 0.028 13.8 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.5 gi|433593089|ref|YP_007282575.1| - 0.047 13.2 0.1 0.17 11.5 0.0 2.0 2 0 0 2 2 2 0 IclR helix-turn-helix domain HTH_5 PF01022.15 gi|433593089|ref|YP_007282575.1| - 0.079 12.6 0.0 0.16 11.6 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_28 PF13518.1 gi|433593089|ref|YP_007282575.1| - 0.1 12.5 0.0 0.25 11.3 0.0 1.7 1 1 0 1 1 1 0 Helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|433593089|ref|YP_007282575.1| - 0.11 12.0 0.0 0.43 10.0 0.0 1.9 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_17 PF12728.2 gi|433593089|ref|YP_007282575.1| - 0.14 12.4 0.0 0.32 11.2 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain RNA_POL_M_15KD PF02150.11 gi|433593094|ref|YP_007282580.1| - 0.031 13.9 9.7 0.9 9.2 0.2 4.8 5 0 0 5 5 5 0 RNA polymerases M/15 Kd subunit DZR PF12773.2 gi|433593094|ref|YP_007282580.1| - 0.6 9.9 13.1 0.17 11.7 0.4 3.8 3 1 1 4 4 4 0 Double zinc ribbon HypA PF01155.14 gi|433593094|ref|YP_007282580.1| - 0.68 9.6 6.3 2.1 8.0 0.3 2.4 2 0 0 2 2 2 0 Hydrogenase expression/synthesis hypA family zinc_ribbon_2 PF13240.1 gi|433593094|ref|YP_007282580.1| - 0.81 9.2 12.3 0.37 10.3 1.5 3.5 4 0 0 4 4 4 0 zinc-ribbon domain zf-Mss51 PF13824.1 gi|433593094|ref|YP_007282580.1| - 2.7 7.9 6.5 47 3.9 1.5 3.3 2 1 0 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-ribbon_3 PF13248.1 gi|433593094|ref|YP_007282580.1| - 5.8 6.2 15.7 0.043 13.0 1.9 3.0 4 0 0 4 4 4 0 zinc-ribbon domain TFIIB PF00382.14 gi|433593095|ref|YP_007282581.1| - 6.3e-33 112.4 0.7 8.8e-18 63.8 0.2 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|433593095|ref|YP_007282581.1| - 3.6e-12 45.4 2.4 6.3e-12 44.6 1.7 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding Cyclin_C PF02984.14 gi|433593095|ref|YP_007282581.1| - 0.0091 15.9 0.0 0.22 11.4 0.0 2.2 2 0 0 2 2 2 1 Cyclin, C-terminal domain Sigma70_r4 PF04545.11 gi|433593095|ref|YP_007282581.1| - 0.012 14.9 0.1 0.82 9.0 0.0 3.0 3 0 0 3 3 3 0 Sigma-70, region 4 DZR PF12773.2 gi|433593095|ref|YP_007282581.1| - 0.024 14.4 1.1 0.051 13.3 0.7 1.4 1 0 0 1 1 1 0 Double zinc ribbon zinc-ribbons_6 PF07191.7 gi|433593095|ref|YP_007282581.1| - 0.07 12.9 0.9 0.14 11.9 0.6 1.5 1 0 0 1 1 1 0 zinc-ribbons OrfB_Zn_ribbon PF07282.6 gi|433593095|ref|YP_007282581.1| - 0.081 12.5 1.1 0.19 11.4 0.7 1.5 1 0 0 1 1 1 0 Putative transposase DNA-binding domain HTH_24 PF13412.1 gi|433593095|ref|YP_007282581.1| - 0.096 12.0 0.0 0.36 10.2 0.0 2.0 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding UPF0547 PF10571.4 gi|433593095|ref|YP_007282581.1| - 0.41 10.3 2.3 0.77 9.5 1.6 1.4 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 LacI PF00356.16 gi|433593095|ref|YP_007282581.1| - 3.3 7.4 6.3 1.6 8.3 1.3 2.7 3 0 0 3 3 3 0 Bacterial regulatory proteins, lacI family SIR2_2 PF13289.1 gi|433593096|ref|YP_007282582.1| - 8.5e-24 84.0 0.3 2.3e-23 82.6 0.2 1.8 2 0 0 2 2 2 1 SIR2-like domain CBP4 PF07960.6 gi|433593098|ref|YP_007282584.1| - 0.15 11.6 0.0 0.21 11.2 0.0 1.2 1 0 0 1 1 1 0 CBP4 Phageshock_PspG PF09583.5 gi|433593099|ref|YP_007282585.1| - 0.12 12.4 4.8 0.16 12.0 3.4 1.3 1 0 0 1 1 1 0 Phage shock protein G (Phageshock_PspG) tRNA_anti-codon PF01336.20 gi|433593101|ref|YP_007282587.1| - 0.00043 20.0 0.1 0.00078 19.2 0.1 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain ALMS_motif PF15309.1 gi|433593101|ref|YP_007282587.1| - 0.21 11.4 1.9 0.39 10.5 1.3 1.5 1 0 0 1 1 1 0 ALMS motif TrmB PF01978.14 gi|433593103|ref|YP_007282589.1| - 1.6e-09 37.2 0.2 3.2e-09 36.3 0.1 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|433593103|ref|YP_007282589.1| - 1.3e-08 34.5 0.1 3.4e-08 33.1 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|433593103|ref|YP_007282589.1| - 4.8e-08 32.2 0.1 1.1e-06 27.9 0.0 2.5 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|433593103|ref|YP_007282589.1| - 1.4e-05 24.6 0.0 4e-05 23.1 0.0 1.8 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.5 gi|433593103|ref|YP_007282589.1| - 0.00029 20.3 0.4 0.001 18.6 0.1 2.1 2 0 0 2 2 2 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|433593103|ref|YP_007282589.1| - 0.00029 20.4 0.4 0.0008 19.0 0.0 1.9 2 0 0 2 2 2 1 MarR family PadR PF03551.9 gi|433593103|ref|YP_007282589.1| - 0.0022 17.7 0.1 0.0046 16.7 0.0 1.7 1 1 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_29 PF13551.1 gi|433593103|ref|YP_007282589.1| - 0.0069 16.5 0.1 0.016 15.3 0.0 1.7 1 1 0 1 1 1 1 Winged helix-turn helix MarR PF01047.17 gi|433593103|ref|YP_007282589.1| - 0.0074 15.9 0.0 0.015 14.9 0.0 1.5 1 0 0 1 1 1 1 MarR family Penicillinase_R PF03965.11 gi|433593103|ref|YP_007282589.1| - 0.023 14.7 0.0 0.043 13.9 0.0 1.4 1 0 0 1 1 1 0 Penicillinase repressor HTH_DeoR PF08220.7 gi|433593103|ref|YP_007282589.1| - 0.029 13.8 0.0 0.1 12.1 0.0 1.9 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain FeoC PF09012.5 gi|433593103|ref|YP_007282589.1| - 0.051 13.2 0.0 0.48 10.1 0.0 2.2 2 0 0 2 2 2 0 FeoC like transcriptional regulator HTH_11 PF08279.7 gi|433593103|ref|YP_007282589.1| - 0.093 12.3 0.0 0.95 9.1 0.0 2.2 2 0 0 2 2 2 0 HTH domain HTH_27 PF13463.1 gi|433593103|ref|YP_007282589.1| - 0.097 13.0 0.1 0.23 11.8 0.1 1.7 1 1 0 1 1 1 0 Winged helix DNA-binding domain F-112 PF09645.5 gi|433593103|ref|YP_007282589.1| - 0.11 12.4 0.0 16 5.4 0.0 2.2 2 0 0 2 2 2 0 F-112 protein HTH_45 PF14947.1 gi|433593103|ref|YP_007282589.1| - 0.15 11.8 0.0 0.38 10.5 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix FYVE PF01363.16 gi|433593104|ref|YP_007282590.1| - 0.79 9.6 4.5 0.65 9.9 1.4 1.9 1 1 1 2 2 2 0 FYVE zinc finger DZR PF12773.2 gi|433593104|ref|YP_007282590.1| - 4.7 7.0 7.4 1.5 8.6 2.5 2.1 1 1 1 2 2 2 0 Double zinc ribbon Lactamase_B PF00753.22 gi|433593106|ref|YP_007282592.1| - 6.7e-12 45.4 7.0 6.7e-12 45.4 4.8 2.0 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|433593106|ref|YP_007282592.1| - 1.3e-09 37.8 2.5 2e-09 37.2 0.3 2.1 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Creatininase PF02633.9 gi|433593107|ref|YP_007282593.1| - 3.1e-64 216.3 0.4 3.5e-64 216.1 0.3 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase Parvo_coat_N PF08398.5 gi|433593108|ref|YP_007282594.1| - 0.009 15.7 0.0 0.026 14.3 0.0 1.7 1 1 0 1 1 1 1 Parvovirus coat protein VP1 HTH_32 PF13565.1 gi|433593108|ref|YP_007282594.1| - 0.13 13.0 0.0 0.17 12.6 0.0 1.3 1 1 0 1 1 1 0 Homeodomain-like domain DivIC PF04977.10 gi|433593109|ref|YP_007282595.1| - 0.028 13.8 0.9 0.07 12.6 0.6 1.6 1 0 0 1 1 1 0 Septum formation initiator SlyX PF04102.7 gi|433593109|ref|YP_007282595.1| - 0.033 14.5 1.0 0.11 12.8 0.2 2.2 3 0 0 3 3 3 0 SlyX ATG16 PF08614.6 gi|433593109|ref|YP_007282595.1| - 0.043 13.6 2.2 0.051 13.4 1.1 1.4 1 1 0 1 1 1 0 Autophagy protein 16 (ATG16) TMF_DNA_bd PF12329.3 gi|433593109|ref|YP_007282595.1| - 0.089 12.6 1.0 0.17 11.6 0.7 1.4 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding DUF3484 PF11983.3 gi|433593109|ref|YP_007282595.1| - 0.15 12.9 0.3 0.42 11.4 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF3484) Prefoldin PF02996.12 gi|433593109|ref|YP_007282595.1| - 0.22 11.1 1.6 0.57 9.8 1.1 1.7 1 0 0 1 1 1 0 Prefoldin subunit AAA_10 PF12846.2 gi|433593110|ref|YP_007282596.1| - 4.7e-22 78.7 0.2 7.5e-22 78.1 0.2 1.2 1 0 0 1 1 1 1 AAA-like domain TrwB_AAD_bind PF10412.4 gi|433593110|ref|YP_007282596.1| - 5.5e-09 35.1 0.0 0.00015 20.4 0.0 2.2 2 0 0 2 2 2 2 Type IV secretion-system coupling protein DNA-binding domain TraG-D_C PF12696.2 gi|433593110|ref|YP_007282596.1| - 8e-08 32.2 0.0 1.8e-07 31.0 0.0 1.6 1 0 0 1 1 1 1 TraM recognition site of TraD and TraG T4SS-DNA_transf PF02534.9 gi|433593110|ref|YP_007282596.1| - 1.8e-06 26.8 0.0 5.4e-05 21.9 0.1 2.1 2 0 0 2 2 2 1 Type IV secretory system Conjugative DNA transfer FtsK_SpoIIIE PF01580.13 gi|433593110|ref|YP_007282596.1| - 0.0017 17.8 0.0 0.0063 16.0 0.0 1.9 1 0 0 1 1 1 1 FtsK/SpoIIIE family Pox_D5 PF03288.11 gi|433593110|ref|YP_007282596.1| - 0.018 15.2 0.0 0.042 14.1 0.0 1.6 1 0 0 1 1 1 0 Poxvirus D5 protein-like NACHT PF05729.7 gi|433593110|ref|YP_007282596.1| - 0.019 14.6 0.0 0.073 12.7 0.0 1.9 2 0 0 2 2 2 0 NACHT domain ParB PF08775.5 gi|433593110|ref|YP_007282596.1| - 0.021 15.1 0.1 0.045 14.0 0.1 1.5 1 0 0 1 1 1 0 ParB family DUF87 PF01935.12 gi|433593110|ref|YP_007282596.1| - 0.034 13.9 0.0 0.11 12.2 0.0 1.9 1 1 0 1 1 1 0 Domain of unknown function DUF87 Rsa3 PF14615.1 gi|433593111|ref|YP_007282597.1| - 0.07 12.4 0.0 0.18 11.1 0.0 1.7 1 0 0 1 1 1 0 Ribosome-assembly protein 3 AAA_10 PF12846.2 gi|433593112|ref|YP_007282598.1| - 9.5e-41 140.1 1.9 1.4e-40 139.6 0.2 2.1 2 0 0 2 2 2 1 AAA-like domain Zot PF05707.7 gi|433593112|ref|YP_007282598.1| - 0.00016 21.1 0.1 0.016 14.6 0.0 2.5 2 0 0 2 2 2 1 Zonular occludens toxin (Zot) TraG-D_C PF12696.2 gi|433593112|ref|YP_007282598.1| - 0.00041 20.2 0.0 0.00092 19.0 0.0 1.6 1 0 0 1 1 1 1 TraM recognition site of TraD and TraG AAA_22 PF13401.1 gi|433593112|ref|YP_007282598.1| - 0.0016 18.5 0.2 0.47 10.5 0.1 2.6 2 0 0 2 2 2 2 AAA domain DUF883 PF05957.8 gi|433593113|ref|YP_007282599.1| - 0.53 10.7 4.6 1.7 9.1 3.2 1.8 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF883) TrbC PF04956.8 gi|433593116|ref|YP_007282602.1| - 0.0024 17.8 0.2 0.0037 17.2 0.2 1.2 1 0 0 1 1 1 1 TrbC/VIRB2 family RHH_3 PF12651.2 gi|433593117|ref|YP_007282603.1| - 0.041 13.6 0.2 0.55 9.9 0.0 2.8 4 0 0 4 4 4 0 Ribbon-helix-helix domain C1_1 PF00130.17 gi|433593118|ref|YP_007282604.1| - 0.0011 18.6 1.3 0.0011 18.6 0.9 2.1 1 1 1 2 2 2 1 Phorbol esters/diacylglycerol binding domain (C1 domain) Ribosomal_L40e PF01020.12 gi|433593118|ref|YP_007282604.1| - 0.0012 18.3 0.8 0.0012 18.3 0.6 1.5 2 0 0 2 2 2 1 Ribosomal L40e family zf-B_box PF00643.19 gi|433593118|ref|YP_007282604.1| - 0.013 15.3 12.4 0.018 14.9 4.7 2.4 2 1 0 2 2 2 0 B-box zinc finger zf-RING_5 PF14634.1 gi|433593118|ref|YP_007282604.1| - 0.023 14.4 9.2 0.031 13.9 6.4 1.2 1 0 0 1 1 1 0 zinc-RING finger domain zf-C3HC4_3 PF13920.1 gi|433593118|ref|YP_007282604.1| - 0.026 14.1 7.0 0.069 12.8 4.8 1.7 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) DZR PF12773.2 gi|433593118|ref|YP_007282604.1| - 0.068 13.0 9.7 0.94 9.3 0.7 2.3 1 1 1 2 2 2 0 Double zinc ribbon zf-HIT PF04438.11 gi|433593118|ref|YP_007282604.1| - 0.089 12.4 8.8 0.35 10.5 3.3 2.3 2 0 0 2 2 2 0 HIT zinc finger zf-C3HC4_2 PF13923.1 gi|433593118|ref|YP_007282604.1| - 0.14 12.1 9.5 0.27 11.3 6.6 1.6 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) zf-UDP PF14569.1 gi|433593118|ref|YP_007282604.1| - 0.18 11.6 4.7 0.23 11.2 3.3 1.2 1 0 0 1 1 1 0 Zinc-binding RING-finger zf-MYND PF01753.13 gi|433593118|ref|YP_007282604.1| - 0.18 11.6 3.4 12 5.8 2.3 2.3 1 1 0 1 1 1 0 MYND finger zf-MIZ PF02891.15 gi|433593118|ref|YP_007282604.1| - 0.2 11.2 4.9 0.25 10.8 3.4 1.2 1 0 0 1 1 1 0 MIZ/SP-RING zinc finger zf-RING-like PF08746.6 gi|433593118|ref|YP_007282604.1| - 0.21 11.6 8.0 0.4 10.7 5.6 1.5 1 1 0 1 1 1 0 RING-like domain zf-RING_2 PF13639.1 gi|433593118|ref|YP_007282604.1| - 0.21 11.4 8.1 0.28 11.0 5.6 1.3 1 0 0 1 1 1 0 Ring finger domain ArfGap PF01412.13 gi|433593118|ref|YP_007282604.1| - 0.36 10.6 4.3 0.44 10.3 3.0 1.2 1 0 0 1 1 1 0 Putative GTPase activating protein for Arf zf-H2C2_2 PF13465.1 gi|433593118|ref|YP_007282604.1| - 0.55 10.6 0.0 0.55 10.6 0.0 3.5 3 1 1 4 4 4 0 Zinc-finger double domain zf-ribbon_3 PF13248.1 gi|433593118|ref|YP_007282604.1| - 0.77 9.0 12.5 2.5 7.4 0.0 3.3 2 1 0 3 3 3 0 zinc-ribbon domain LIM PF00412.17 gi|433593118|ref|YP_007282604.1| - 1.4 9.0 8.1 11 6.2 5.6 2.2 1 1 0 1 1 1 0 LIM domain Ogr_Delta PF04606.7 gi|433593118|ref|YP_007282604.1| - 2.4 7.8 0.1 2.4 7.8 0.0 2.9 3 1 0 3 3 3 0 Ogr/Delta-like zinc finger zf-RING_4 PF14570.1 gi|433593118|ref|YP_007282604.1| - 3.2 7.4 11.0 6.7 6.3 7.6 1.6 1 1 0 1 1 1 0 RING/Ubox like zinc-binding domain NinE PF05322.6 gi|433593118|ref|YP_007282604.1| - 4.1 7.2 5.7 29 4.4 4.0 2.0 1 1 0 1 1 1 0 NINE Protein Zn_Tnp_IS1595 PF12760.2 gi|433593118|ref|YP_007282604.1| - 4.2 7.2 14.3 23 4.8 4.7 2.6 1 1 2 3 3 2 0 Transposase zinc-ribbon domain zf-C2H2 PF00096.21 gi|433593118|ref|YP_007282604.1| - 6.8 7.2 19.0 11 6.5 0.1 4.0 4 0 0 4 4 4 0 Zinc finger, C2H2 type HypA PF01155.14 gi|433593118|ref|YP_007282604.1| - 8.7 6.0 8.4 82 2.9 5.8 2.1 1 1 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zinc_ribbon_6 PF14599.1 gi|433593118|ref|YP_007282604.1| - 9.1 6.1 14.8 1.6 8.5 1.3 3.1 1 1 1 2 2 2 0 Zinc-ribbon PSII_BNR PF14870.1 gi|433593119|ref|YP_007282605.1| - 8.2e-06 25.0 2.5 0.095 11.6 0.0 3.2 2 1 0 3 3 3 2 Photosynthesis system II assembly factor YCF48 BNR_2 PF13088.1 gi|433593119|ref|YP_007282605.1| - 3e-05 23.4 4.2 0.94 8.7 0.0 3.9 1 1 0 3 3 3 3 BNR repeat-like domain BNR PF02012.15 gi|433593119|ref|YP_007282605.1| - 0.00057 19.3 30.6 0.13 12.1 0.1 6.2 7 0 0 7 7 7 4 BNR/Asp-box repeat DUF4185 PF13810.1 gi|433593119|ref|YP_007282605.1| - 0.0066 15.3 2.7 1.4 7.7 0.0 3.8 2 2 0 3 3 3 1 Domain of unknown function (DUF4185) End_beta_propel PF12217.3 gi|433593119|ref|YP_007282605.1| - 0.032 12.8 1.3 5.4 5.5 0.0 3.6 1 1 4 5 5 5 0 Catalytic beta propeller domain of bacteriophage endosialidase DUF2656 PF10847.3 gi|433593119|ref|YP_007282605.1| - 0.067 13.1 0.0 1.9 8.4 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2656) PQQ_3 PF13570.1 gi|433593119|ref|YP_007282605.1| - 1.1 9.6 13.1 7.4 7.0 0.0 5.2 6 1 0 6 6 6 0 PQQ-like domain Mo-co_dimer PF03404.11 gi|433593119|ref|YP_007282605.1| - 1.6 8.3 6.9 48 3.5 0.0 3.9 2 1 1 4 4 4 0 Mo-co oxidoreductase dimerisation domain DUF1931 PF09123.6 gi|433593120|ref|YP_007282606.1| - 0.00038 20.4 0.5 0.0004 20.3 0.4 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1931) Histone PF00125.19 gi|433593120|ref|YP_007282606.1| - 0.00085 19.3 0.0 0.0012 18.9 0.0 1.4 1 1 0 1 1 1 1 Core histone H2A/H2B/H3/H4 CBFD_NFYB_HMF PF00808.18 gi|433593120|ref|YP_007282606.1| - 0.0012 18.8 0.0 0.0015 18.5 0.0 1.3 1 1 0 1 1 1 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone SBP_bac_7 PF03480.8 gi|433593120|ref|YP_007282606.1| - 0.072 12.1 0.0 0.084 11.9 0.0 1.1 1 0 0 1 1 1 0 Bacterial extracellular solute-binding protein, family 7 Glutaredoxin PF00462.19 gi|433593120|ref|YP_007282606.1| - 0.16 11.9 0.1 0.22 11.5 0.1 1.2 1 0 0 1 1 1 0 Glutaredoxin PadR PF03551.9 gi|433593121|ref|YP_007282607.1| - 1.4e-14 53.6 0.8 1.6e-14 53.3 0.6 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_45 PF14947.1 gi|433593121|ref|YP_007282607.1| - 0.0013 18.4 0.1 0.0022 17.7 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_27 PF13463.1 gi|433593121|ref|YP_007282607.1| - 0.012 15.9 0.0 0.019 15.2 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF2746 PF10874.3 gi|433593123|ref|YP_007282609.1| - 0.076 13.2 0.3 0.089 12.9 0.2 1.2 1 1 0 1 1 1 0 Protein of unknown function (DUF2746) RHH_1 PF01402.16 gi|433593123|ref|YP_007282609.1| - 0.092 12.6 0.1 0.11 12.4 0.1 1.3 1 1 0 1 1 1 0 Ribbon-helix-helix protein, copG family E1-E2_ATPase PF00122.15 gi|433593124|ref|YP_007282610.1| - 4.2e-54 183.0 5.7 2.7e-53 180.3 0.6 2.4 2 0 0 2 2 2 2 E1-E2 ATPase Hydrolase PF00702.21 gi|433593124|ref|YP_007282610.1| - 6.2e-44 150.9 9.0 1.1e-43 150.1 6.2 1.5 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|433593124|ref|YP_007282610.1| - 2e-18 67.2 0.3 3.9e-18 66.3 0.2 1.5 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|433593124|ref|YP_007282610.1| - 3.8e-05 23.3 0.1 0.0013 18.3 0.1 2.2 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HMA PF00403.21 gi|433593125|ref|YP_007282611.1| - 8.4e-19 67.4 1.9 9.3e-19 67.3 1.3 1.0 1 0 0 1 1 1 1 Heavy-metal-associated domain MafB19-deam PF14437.1 gi|433593125|ref|YP_007282611.1| - 0.043 13.4 1.2 0.059 13.0 0.2 1.6 1 1 1 2 2 2 0 MafB19-like deaminase Fer4_15 PF13459.1 gi|433593125|ref|YP_007282611.1| - 0.25 11.9 1.4 0.32 11.5 1.0 1.2 1 0 0 1 1 1 0 4Fe-4S single cluster domain DUF360 PF04020.8 gi|433593127|ref|YP_007282613.1| - 0.23 11.8 4.6 0.29 11.5 3.2 1.1 1 0 0 1 1 1 0 Membrane protein of unknown function Oxidored_q2 PF00420.19 gi|433593127|ref|YP_007282613.1| - 0.27 10.8 0.1 0.27 10.8 0.1 2.5 1 1 1 2 2 2 0 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L MerC PF03203.9 gi|433593127|ref|YP_007282613.1| - 0.56 10.5 4.9 0.84 10.0 3.4 1.4 1 1 0 1 1 1 0 MerC mercury resistance protein DUF3040 PF11239.3 gi|433593127|ref|YP_007282613.1| - 0.78 9.8 3.7 1 9.4 2.3 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3040) DUF2484 PF10658.4 gi|433593127|ref|YP_007282613.1| - 6.6 6.9 6.5 11 6.2 0.9 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF2484) MarR_2 PF12802.2 gi|433593128|ref|YP_007282614.1| - 4.3e-10 39.1 0.0 6.7e-10 38.4 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|433593128|ref|YP_007282614.1| - 5.3e-09 35.7 0.1 8.5e-09 35.0 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|433593128|ref|YP_007282614.1| - 5.6e-09 35.2 0.0 8.2e-09 34.7 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.5 gi|433593128|ref|YP_007282614.1| - 7e-08 31.9 0.1 1.1e-07 31.2 0.1 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_AsnC-type PF13404.1 gi|433593128|ref|YP_007282614.1| - 9.3e-06 25.0 0.3 1.6e-05 24.2 0.2 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain MarR PF01047.17 gi|433593128|ref|YP_007282614.1| - 9.5e-06 25.2 0.0 1.7e-05 24.4 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.7 gi|433593128|ref|YP_007282614.1| - 7.4e-05 22.3 0.0 0.00016 21.2 0.0 1.5 2 0 0 2 2 2 1 HTH domain HTH_27 PF13463.1 gi|433593128|ref|YP_007282614.1| - 0.00014 22.1 0.1 0.00022 21.4 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain Fe_dep_repress PF01325.14 gi|433593128|ref|YP_007282614.1| - 0.00023 21.0 0.1 0.00035 20.4 0.0 1.3 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain TrmB PF01978.14 gi|433593128|ref|YP_007282614.1| - 0.00026 20.6 0.0 0.00041 19.9 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.15 gi|433593128|ref|YP_007282614.1| - 0.00036 20.1 0.0 0.00054 19.5 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Sigma70_r4_2 PF08281.7 gi|433593128|ref|YP_007282614.1| - 0.0011 18.3 0.1 0.0017 17.7 0.1 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_23 PF13384.1 gi|433593128|ref|YP_007282614.1| - 0.0011 18.5 0.0 0.002 17.6 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain GntR PF00392.16 gi|433593128|ref|YP_007282614.1| - 0.004 16.5 0.1 0.0067 15.8 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_Crp_2 PF13545.1 gi|433593128|ref|YP_007282614.1| - 0.0058 16.3 0.0 0.0077 15.9 0.0 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain Sigma70_r4 PF04545.11 gi|433593128|ref|YP_007282614.1| - 0.008 15.4 0.0 0.012 14.8 0.0 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_DeoR PF08220.7 gi|433593128|ref|YP_007282614.1| - 0.014 14.9 0.1 0.024 14.1 0.1 1.3 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain RP-C PF03428.8 gi|433593128|ref|YP_007282614.1| - 0.021 14.3 0.0 0.027 13.9 0.0 1.2 1 0 0 1 1 1 0 Replication protein C N-terminal domain Penicillinase_R PF03965.11 gi|433593128|ref|YP_007282614.1| - 0.028 14.5 0.0 0.039 14.0 0.0 1.3 1 0 0 1 1 1 0 Penicillinase repressor Rrf2 PF02082.15 gi|433593128|ref|YP_007282614.1| - 0.031 14.4 0.0 0.048 13.7 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator DUF2250 PF10007.4 gi|433593128|ref|YP_007282614.1| - 0.034 14.0 0.0 0.066 13.1 0.0 1.5 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) Crp PF00325.15 gi|433593128|ref|YP_007282614.1| - 0.046 13.2 0.2 0.063 12.7 0.1 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, crp family HTH_36 PF13730.1 gi|433593128|ref|YP_007282614.1| - 0.053 13.6 0.0 0.071 13.2 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_28 PF13518.1 gi|433593128|ref|YP_007282614.1| - 0.058 13.4 0.0 0.1 12.6 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_3 PF01381.17 gi|433593128|ref|YP_007282614.1| - 0.082 12.7 0.0 0.21 11.4 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix DUF479 PF04336.7 gi|433593128|ref|YP_007282614.1| - 0.15 12.1 0.0 0.2 11.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF479 DoxX PF07681.7 gi|433593129|ref|YP_007282615.1| - 7.7e-12 45.4 10.8 7.7e-12 45.4 7.5 1.9 2 0 0 2 2 2 1 DoxX NnrU PF07298.6 gi|433593129|ref|YP_007282615.1| - 0.025 13.9 5.2 0.035 13.4 3.6 1.4 1 1 0 1 1 1 0 NnrU protein SHOCT PF09851.4 gi|433593130|ref|YP_007282616.1| - 3.8e-11 42.0 1.1 5.2e-11 41.6 0.8 1.2 1 0 0 1 1 1 1 Short C-terminal domain GvpG PF05120.7 gi|433593130|ref|YP_007282616.1| - 0.00098 18.8 0.2 0.0017 18.0 0.1 1.5 1 1 0 1 1 1 1 Gas vesicle protein G DUF1707 PF08044.6 gi|433593130|ref|YP_007282616.1| - 0.0023 17.6 1.0 0.0023 17.6 0.7 1.5 2 0 0 2 2 2 1 Domain of unknown function (DUF1707) Herpes_LMP1 PF05297.6 gi|433593130|ref|YP_007282616.1| - 0.012 14.5 0.0 0.015 14.2 0.0 1.1 1 0 0 1 1 1 0 Herpesvirus latent membrane protein 1 (LMP1) DUF412 PF04217.8 gi|433593130|ref|YP_007282616.1| - 0.2 11.4 0.7 0.34 10.6 0.5 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF412 Usp PF00582.21 gi|433593131|ref|YP_007282617.1| - 1.7e-27 96.3 2.6 1.9e-27 96.1 1.8 1.0 1 0 0 1 1 1 1 Universal stress protein family DNA_photolyase PF00875.13 gi|433593131|ref|YP_007282617.1| - 0.037 13.7 0.2 0.079 12.7 0.1 1.5 1 1 0 1 1 1 0 DNA photolyase DUF318 PF03773.8 gi|433593132|ref|YP_007282618.1| - 1e-43 149.5 15.4 1.9e-43 148.6 10.6 1.4 1 1 0 1 1 1 1 Predicted permease YHS PF04945.8 gi|433593132|ref|YP_007282618.1| - 5e-20 71.0 9.0 1.3e-14 53.7 2.5 2.3 2 0 0 2 2 2 2 YHS domain zf-FCS PF06467.9 gi|433593132|ref|YP_007282618.1| - 3e-05 23.5 4.7 0.013 15.1 0.3 2.4 2 0 0 2 2 2 2 MYM-type Zinc finger with FCS sequence motif Arc_trans_TRASH PF08394.5 gi|433593132|ref|YP_007282618.1| - 0.034 14.3 0.2 0.091 12.9 0.1 1.7 1 0 0 1 1 1 0 Archaeal TRASH domain zf-HIT PF04438.11 gi|433593132|ref|YP_007282618.1| - 0.2 11.3 1.1 0.47 10.1 0.1 2.0 2 0 0 2 2 2 0 HIT zinc finger RPAP2_Rtr1 PF04181.8 gi|433593132|ref|YP_007282618.1| - 0.26 11.4 1.3 13 5.9 0.0 2.2 2 0 0 2 2 2 0 Rtr1/RPAP2 family SHOCT PF09851.4 gi|433593133|ref|YP_007282619.1| - 9.9e-08 31.1 6.5 1.3e-07 30.8 4.5 1.2 1 0 0 1 1 1 1 Short C-terminal domain DUF1707 PF08044.6 gi|433593133|ref|YP_007282619.1| - 1.7e-05 24.4 3.3 2.8e-05 23.7 2.3 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1707) NfeD PF01957.13 gi|433593133|ref|YP_007282619.1| - 0.017 15.2 1.9 0.022 14.8 1.3 1.1 1 0 0 1 1 1 0 NfeD-like C-terminal, partner-binding Yip1 PF04893.12 gi|433593133|ref|YP_007282619.1| - 0.024 14.1 5.7 0.031 13.7 3.9 1.1 1 0 0 1 1 1 0 Yip1 domain GvpG PF05120.7 gi|433593133|ref|YP_007282619.1| - 0.03 14.1 0.7 0.053 13.3 0.5 1.4 1 0 0 1 1 1 0 Gas vesicle protein G Tetraspannin PF00335.15 gi|433593133|ref|YP_007282619.1| - 0.068 12.4 0.0 0.093 11.9 0.0 1.2 1 0 0 1 1 1 0 Tetraspanin family DMAP_binding PF06464.6 gi|433593133|ref|YP_007282619.1| - 0.096 13.2 0.5 0.12 12.9 0.4 1.1 1 0 0 1 1 1 0 DMAP1-binding Domain Tox-WTIP PF15654.1 gi|433593133|ref|YP_007282619.1| - 0.12 11.9 0.4 0.21 11.2 0.3 1.3 1 0 0 1 1 1 0 Toxin with a conserved tryptophan and TIP tripeptide motif DUF3007 PF11460.3 gi|433593133|ref|YP_007282619.1| - 0.13 12.3 3.0 2.7 8.1 0.0 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3007) Halogen_Hydrol PF10112.4 gi|433593133|ref|YP_007282619.1| - 0.31 10.4 1.6 0.68 9.3 0.0 1.8 1 1 1 2 2 2 0 5-bromo-4-chloroindolyl phosphate hydrolysis protein Metal_resist PF13801.1 gi|433593133|ref|YP_007282619.1| - 0.87 9.5 3.9 3.2 7.7 0.0 2.1 2 0 0 2 2 2 0 Heavy-metal resistance DUF2970 PF11174.3 gi|433593133|ref|YP_007282619.1| - 1.1 8.8 7.0 0.81 9.3 0.6 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2970) Na_Pi_cotrans PF02690.10 gi|433593134|ref|YP_007282620.1| - 0.062 13.0 0.2 0.58 9.8 0.2 2.1 2 0 0 2 2 2 0 Na+/Pi-cotransporter DUF981 PF06168.6 gi|433593134|ref|YP_007282620.1| - 0.1 12.4 3.4 0.11 12.2 0.7 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF981) YrhK PF14145.1 gi|433593134|ref|YP_007282620.1| - 8.1 6.1 7.3 1.6 8.4 1.3 2.5 2 1 0 2 2 2 0 YrhK-like protein HTH_20 PF12840.2 gi|433593135|ref|YP_007282621.1| - 1.2e-15 57.0 0.3 2.3e-15 56.1 0.2 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|433593135|ref|YP_007282621.1| - 0.0001 21.8 0.1 0.017 14.7 0.0 2.5 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family TFIIE_alpha PF02002.12 gi|433593135|ref|YP_007282621.1| - 0.00015 21.2 0.1 0.00035 20.0 0.0 1.8 1 1 1 2 2 2 1 TFIIE alpha subunit HTH_12 PF08461.5 gi|433593135|ref|YP_007282621.1| - 0.00055 19.6 0.1 0.001 18.7 0.1 1.4 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain TrmB PF01978.14 gi|433593135|ref|YP_007282621.1| - 0.0013 18.3 0.6 0.013 15.1 0.0 2.5 2 1 1 3 3 3 1 Sugar-specific transcriptional regulator TrmB Cdc6_C PF09079.6 gi|433593135|ref|YP_007282621.1| - 0.0015 18.2 0.1 0.004 16.8 0.1 1.7 1 1 0 1 1 1 1 CDC6, C terminal FUR PF01475.14 gi|433593135|ref|YP_007282621.1| - 0.015 15.2 0.1 0.024 14.5 0.1 1.5 1 1 0 1 1 1 0 Ferric uptake regulator family PadR PF03551.9 gi|433593135|ref|YP_007282621.1| - 0.056 13.2 0.0 0.099 12.4 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family HMA PF00403.21 gi|433593136|ref|YP_007282622.1| - 8.1e-14 51.5 0.0 9e-14 51.3 0.0 1.0 1 0 0 1 1 1 1 Heavy-metal-associated domain DUF276 PF03434.8 gi|433593136|ref|YP_007282622.1| - 0.021 13.8 0.0 0.021 13.8 0.0 1.1 1 0 0 1 1 1 0 DUF276 E1-E2_ATPase PF00122.15 gi|433593137|ref|YP_007282623.1| - 5.8e-49 166.1 0.1 5.8e-49 166.1 0.1 2.4 2 1 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.21 gi|433593137|ref|YP_007282623.1| - 2.9e-41 142.2 11.2 5.4e-41 141.3 7.8 1.5 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|433593137|ref|YP_007282623.1| - 6e-16 59.1 0.2 1.2e-15 58.2 0.1 1.5 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|433593137|ref|YP_007282623.1| - 0.0017 17.9 2.0 0.012 15.2 1.1 2.1 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase FmdE PF02663.9 gi|433593138|ref|YP_007282624.1| - 0.013 15.4 0.0 0.026 14.3 0.0 1.6 1 1 0 1 1 1 0 FmdE, Molybdenum formylmethanofuran dehydrogenase operon Phage_int_SAM_1 PF02899.12 gi|433593139|ref|YP_007282625.1| - 4.9e-06 26.6 0.0 0.0011 19.0 0.0 3.3 3 0 0 3 3 3 1 Phage integrase, N-terminal SAM-like domain Phage_integrase PF00589.17 gi|433593139|ref|YP_007282625.1| - 0.0023 17.6 0.0 0.028 14.0 0.0 2.3 1 1 0 1 1 1 1 Phage integrase family Phage_int_SAM_4 PF13495.1 gi|433593139|ref|YP_007282625.1| - 0.016 15.4 0.0 0.037 14.3 0.0 1.6 1 0 0 1 1 1 0 Phage integrase, N-terminal SAM-like domain DDE_Tnp_1 PF01609.16 gi|433593141|ref|YP_007282627.1| - 2e-10 40.6 0.7 3.1e-10 39.9 0.5 1.3 1 0 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.6 gi|433593141|ref|YP_007282627.1| - 0.0013 18.6 0.0 0.0047 16.8 0.0 2.0 1 0 0 1 1 1 1 Transposase domain (DUF772) PHO4 PF01384.15 gi|433593142|ref|YP_007282628.1| - 1e-61 208.4 37.5 7e-61 205.6 24.7 2.0 1 1 0 1 1 1 1 Phosphate transporter family Usp PF00582.21 gi|433593143|ref|YP_007282629.1| - 8.6e-11 42.1 1.1 1e-10 41.9 0.7 1.1 1 0 0 1 1 1 1 Universal stress protein family HK97-gp10_like PF04883.7 gi|433593143|ref|YP_007282629.1| - 0.08 13.8 0.1 0.13 13.2 0.1 1.3 1 0 0 1 1 1 0 Bacteriophage HK97-gp10, putative tail-component Rod_cone_degen PF15201.1 gi|433593143|ref|YP_007282629.1| - 0.16 11.8 0.8 0.36 10.7 0.0 1.9 2 0 0 2 2 2 0 Progressive rod-cone degeneration Trypan_PARP PF05887.6 gi|433593144|ref|YP_007282630.1| - 2.1 8.1 13.0 3.2 7.5 9.0 1.3 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) Daxx PF03344.10 gi|433593144|ref|YP_007282630.1| - 6.2 5.1 11.2 5.7 5.2 7.8 1.1 1 0 0 1 1 1 0 Daxx Family CbiA PF01656.18 gi|433593145|ref|YP_007282631.1| - 1.9e-25 89.3 0.0 2.7e-25 88.9 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|433593145|ref|YP_007282631.1| - 1.2e-08 35.0 0.0 1.3e-07 31.7 0.0 2.1 1 1 0 1 1 1 1 AAA domain MipZ PF09140.6 gi|433593145|ref|YP_007282631.1| - 8.9e-08 31.5 0.0 0.00077 18.6 0.1 3.0 3 1 0 3 3 3 2 ATPase MipZ YhjQ PF06564.7 gi|433593145|ref|YP_007282631.1| - 3e-05 23.4 0.0 4.3e-05 22.9 0.0 1.1 1 0 0 1 1 1 1 YhjQ protein ArsA_ATPase PF02374.10 gi|433593145|ref|YP_007282631.1| - 0.00016 20.8 0.1 0.0015 17.6 0.1 2.1 2 0 0 2 2 2 1 Anion-transporting ATPase AAA_17 PF13207.1 gi|433593145|ref|YP_007282631.1| - 0.0012 19.6 0.8 0.003 18.3 0.5 1.7 1 1 0 1 1 1 1 AAA domain VirC1 PF07015.6 gi|433593145|ref|YP_007282631.1| - 0.0022 17.1 0.0 0.65 9.0 0.0 2.2 2 0 0 2 2 2 2 VirC1 protein APS_kinase PF01583.15 gi|433593145|ref|YP_007282631.1| - 0.0063 16.1 0.1 0.015 15.0 0.1 1.5 1 0 0 1 1 1 1 Adenylylsulphate kinase Fer4_NifH PF00142.13 gi|433593145|ref|YP_007282631.1| - 0.007 15.5 0.0 0.34 10.0 0.0 2.3 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_25 PF13481.1 gi|433593145|ref|YP_007282631.1| - 0.019 14.3 0.2 0.047 13.0 0.2 1.6 1 1 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|433593145|ref|YP_007282631.1| - 0.025 14.0 0.1 0.1 11.9 0.0 1.9 2 1 0 2 2 2 0 AAA-like domain SRP54 PF00448.17 gi|433593145|ref|YP_007282631.1| - 0.086 12.2 0.1 3.8 6.9 0.0 2.2 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_18 PF13238.1 gi|433593145|ref|YP_007282631.1| - 0.13 12.6 0.4 0.36 11.1 0.1 1.9 2 1 0 2 2 2 0 AAA domain SHOCT PF09851.4 gi|433593146|ref|YP_007282632.1| - 4.9e-09 35.3 3.4 6.6e-09 34.9 2.4 1.2 1 0 0 1 1 1 1 Short C-terminal domain DUF1707 PF08044.6 gi|433593146|ref|YP_007282632.1| - 3.3e-06 26.7 1.8 4.8e-06 26.2 1.3 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1707) DUF4131 PF13567.1 gi|433593146|ref|YP_007282632.1| - 0.011 15.1 0.3 0.014 14.8 0.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) GvpG PF05120.7 gi|433593146|ref|YP_007282632.1| - 0.079 12.7 0.6 0.13 12.0 0.4 1.4 1 0 0 1 1 1 0 Gas vesicle protein G DUF2244 PF10003.4 gi|433593146|ref|YP_007282632.1| - 0.12 11.6 5.9 2.1 7.6 0.0 2.1 2 0 0 2 2 2 0 Integral membrane protein (DUF2244) DUF1469 PF07332.6 gi|433593146|ref|YP_007282632.1| - 0.13 12.0 8.0 0.17 11.6 5.5 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) ABC2_membrane_4 PF12730.2 gi|433593146|ref|YP_007282632.1| - 0.19 10.8 6.2 0.23 10.6 4.3 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein DUF2636 PF11120.3 gi|433593146|ref|YP_007282632.1| - 0.31 10.5 2.9 0.35 10.4 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2636) DUF2627 PF11118.3 gi|433593146|ref|YP_007282632.1| - 0.42 10.7 5.3 0.6 10.2 3.7 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2627) Virul_fac_BrkB PF03631.10 gi|433593146|ref|YP_007282632.1| - 0.48 9.7 8.1 0.59 9.4 5.6 1.0 1 0 0 1 1 1 0 Virulence factor BrkB PTS_EIIC PF02378.13 gi|433593146|ref|YP_007282632.1| - 1.1 8.0 9.5 1.2 7.8 6.6 1.0 1 0 0 1 1 1 0 Phosphotransferase system, EIIC ABC2_membrane_3 PF12698.2 gi|433593146|ref|YP_007282632.1| - 1.5 7.7 5.5 2.2 7.2 3.8 1.2 1 0 0 1 1 1 0 ABC-2 family transporter protein Ion_trans_2 PF07885.11 gi|433593147|ref|YP_007282633.1| - 3.5e-05 23.4 13.4 3.5e-05 23.4 9.3 2.2 2 1 0 2 2 2 1 Ion channel E1-E2_ATPase PF00122.15 gi|433593148|ref|YP_007282634.1| - 7.3e-55 185.5 6.2 1.6e-53 181.1 1.1 2.5 2 0 0 2 2 2 2 E1-E2 ATPase Hydrolase PF00702.21 gi|433593148|ref|YP_007282634.1| - 3.5e-47 161.5 7.1 7.3e-47 160.5 4.9 1.6 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|433593148|ref|YP_007282634.1| - 6.6e-17 62.3 0.1 1.5e-16 61.1 0.0 1.7 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|433593148|ref|YP_007282634.1| - 1.6e-05 24.6 0.2 0.00026 20.6 0.2 2.3 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase adh_short PF00106.20 gi|433593149|ref|YP_007282635.1| - 8.1e-34 116.9 1.4 1e-33 116.5 1.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|433593149|ref|YP_007282635.1| - 3.3e-17 62.7 0.6 5e-17 62.1 0.4 1.2 1 0 0 1 1 1 1 KR domain adh_short_C2 PF13561.1 gi|433593149|ref|YP_007282635.1| - 1.9e-09 37.6 0.0 2.7e-09 37.1 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase NAD_binding_10 PF13460.1 gi|433593149|ref|YP_007282635.1| - 0.0055 16.7 1.5 0.0093 15.9 1.0 1.5 1 1 0 1 1 1 1 NADH(P)-binding Entericidin PF08085.6 gi|433593149|ref|YP_007282635.1| - 0.65 9.8 3.4 8.7 6.2 0.3 2.8 2 0 0 2 2 2 0 Entericidin EcnA/B family VKOR PF07884.9 gi|433593150|ref|YP_007282636.1| - 3.1e-17 62.7 4.9 3.1e-17 62.7 3.4 2.5 3 2 0 3 3 3 1 Vitamin K epoxide reductase family SPW PF03779.9 gi|433593150|ref|YP_007282636.1| - 2.4e-07 30.0 42.3 0.0022 17.2 0.3 5.4 5 0 0 5 5 5 4 SPW repeat Glyco_hydro_15 PF00723.16 gi|433593151|ref|YP_007282637.1| - 7.7e-50 169.7 0.0 1.6e-44 152.2 0.0 2.1 1 1 1 2 2 2 2 Glycosyl hydrolases family 15 TPR_2 PF07719.12 gi|433593151|ref|YP_007282637.1| - 0.0074 16.1 0.1 5.8 7.0 0.0 3.0 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_14 PF13428.1 gi|433593151|ref|YP_007282637.1| - 0.068 13.8 0.1 7.3 7.5 0.0 2.8 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_8 PF13181.1 gi|433593151|ref|YP_007282637.1| - 0.16 11.8 0.1 16 5.5 0.0 3.1 3 0 0 3 3 3 0 Tetratricopeptide repeat TPR_1 PF00515.23 gi|433593151|ref|YP_007282637.1| - 0.83 9.3 2.4 5.5 6.7 0.0 3.1 5 0 0 5 5 5 0 Tetratricopeptide repeat SPW PF03779.9 gi|433593152|ref|YP_007282638.1| - 0.0041 16.4 17.3 0.11 11.8 2.2 2.9 2 2 0 2 2 2 2 SPW repeat CitMHS PF03600.11 gi|433593152|ref|YP_007282638.1| - 0.0061 15.1 0.5 0.0091 14.6 0.4 1.3 1 1 0 1 1 1 1 Citrate transporter YhhN PF07947.9 gi|433593152|ref|YP_007282638.1| - 0.04 13.2 0.3 0.055 12.8 0.2 1.3 1 0 0 1 1 1 0 YhhN-like protein Sarcolipin PF05366.6 gi|433593152|ref|YP_007282638.1| - 0.43 10.0 4.9 0.48 9.8 0.3 2.6 3 0 0 3 3 3 0 Sarcolipin DUF1304 PF06993.7 gi|433593152|ref|YP_007282638.1| - 1.2 8.8 4.1 1.1 9.0 0.9 2.1 2 1 0 2 2 2 0 Protein of unknown function (DUF1304) DUF308 PF03729.8 gi|433593152|ref|YP_007282638.1| - 2.3 8.2 9.8 4.7 7.2 0.4 2.5 2 1 0 2 2 2 0 Short repeat of unknown function (DUF308) TraQ PF09679.5 gi|433593152|ref|YP_007282638.1| - 4.3 7.3 6.9 2.9 7.8 0.5 2.1 1 1 1 2 2 2 0 Type-F conjugative transfer system pilin chaperone (TraQ) DUF326 PF03860.11 gi|433593153|ref|YP_007282639.1| - 2.8e-07 29.9 47.7 0.0021 17.7 8.4 4.9 3 2 2 5 5 5 4 Domain of Unknown Function (DUF326) Choline_transpo PF04515.7 gi|433593153|ref|YP_007282639.1| - 0.23 10.1 1.2 0.35 9.5 0.9 1.3 1 0 0 1 1 1 0 Plasma-membrane choline transporter FUSC_2 PF13515.1 gi|433593154|ref|YP_007282640.1| - 0.36 10.7 8.2 0.58 10.0 5.7 1.4 1 1 0 1 1 1 0 Fusaric acid resistance protein-like Tic20 PF09685.5 gi|433593154|ref|YP_007282640.1| - 2.3 8.2 8.9 6.2 6.8 0.1 2.1 1 1 1 2 2 2 0 Tic20-like protein VIT1 PF01988.14 gi|433593154|ref|YP_007282640.1| - 6.9 6.0 8.9 1.6 8.1 3.5 1.7 2 0 0 2 2 2 0 VIT family YjgP_YjgQ PF03739.9 gi|433593154|ref|YP_007282640.1| - 8.5 5.0 8.2 11 4.6 5.7 1.1 1 0 0 1 1 1 0 Predicted permease YjgP/YjgQ family P12 PF12669.2 gi|433593154|ref|YP_007282640.1| - 9.2 6.5 9.7 8.4 6.6 0.1 3.0 3 0 0 3 3 3 0 Virus attachment protein p12 family z-alpha PF02295.12 gi|433593155|ref|YP_007282641.1| - 0.0019 17.9 0.0 0.0087 15.8 0.0 1.8 2 0 0 2 2 2 1 Adenosine deaminase z-alpha domain HTH_45 PF14947.1 gi|433593155|ref|YP_007282641.1| - 0.021 14.6 0.1 0.04 13.7 0.1 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix MarR_2 PF12802.2 gi|433593155|ref|YP_007282641.1| - 0.037 13.7 0.0 0.065 12.9 0.0 1.4 1 0 0 1 1 1 0 MarR family Mrr_N PF14338.1 gi|433593155|ref|YP_007282641.1| - 0.043 13.9 0.1 0.066 13.2 0.0 1.3 1 0 0 1 1 1 0 Mrr N-terminal domain Replic_Relax PF13814.1 gi|433593155|ref|YP_007282641.1| - 0.082 12.7 0.0 0.12 12.1 0.0 1.2 1 0 0 1 1 1 0 Replication-relaxation HTH_12 PF08461.5 gi|433593155|ref|YP_007282641.1| - 0.088 12.5 0.2 0.14 11.9 0.2 1.3 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain Rio2_N PF09202.6 gi|433593155|ref|YP_007282641.1| - 0.12 12.4 0.0 0.2 11.7 0.0 1.3 1 0 0 1 1 1 0 Rio2, N-terminal RRN7 PF11781.3 gi|433593156|ref|YP_007282642.1| - 9.6 5.8 8.7 1.7 8.1 0.1 2.2 2 0 0 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 DUF4149 PF13664.1 gi|433593157|ref|YP_007282643.1| - 0.15 12.1 5.2 0.17 11.9 3.6 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4149) NfeD PF01957.13 gi|433593157|ref|YP_007282643.1| - 0.43 10.7 6.4 0.5 10.4 4.4 1.1 1 0 0 1 1 1 0 NfeD-like C-terminal, partner-binding DUF3311 PF11755.3 gi|433593157|ref|YP_007282643.1| - 0.81 9.2 3.3 1.4 8.5 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3311) PrgI PF12666.2 gi|433593157|ref|YP_007282643.1| - 1.2 9.3 5.3 1.5 9.0 3.7 1.1 1 0 0 1 1 1 0 PrgI family protein Phage_integrase PF00589.17 gi|433593158|ref|YP_007282644.1| - 2e-16 60.1 0.0 1.9e-15 56.9 0.0 2.1 1 1 0 1 1 1 1 Phage integrase family Phage_int_SAM_1 PF02899.12 gi|433593158|ref|YP_007282644.1| - 7.4e-09 35.6 0.2 1.9e-08 34.3 0.1 1.7 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.1 gi|433593158|ref|YP_007282644.1| - 6.8e-06 26.3 0.1 1.6e-05 25.1 0.1 1.6 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain HTH_23 PF13384.1 gi|433593159|ref|YP_007282645.1| - 3.2e-05 23.4 0.0 0.00016 21.1 0.0 2.1 3 0 0 3 3 3 1 Homeodomain-like domain HTH_28 PF13518.1 gi|433593159|ref|YP_007282645.1| - 0.00032 20.6 0.0 0.0015 18.4 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain Fe_dep_repress PF01325.14 gi|433593159|ref|YP_007282645.1| - 0.0009 19.1 0.1 0.005 16.7 0.0 2.1 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_1 PF00126.22 gi|433593159|ref|YP_007282645.1| - 0.002 17.8 0.6 0.0042 16.7 0.1 1.7 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix protein, lysR family TrmB PF01978.14 gi|433593159|ref|YP_007282645.1| - 0.0021 17.7 0.0 0.0039 16.8 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|433593159|ref|YP_007282645.1| - 0.0027 17.3 0.0 0.0056 16.3 0.0 1.5 1 1 0 1 1 1 1 MarR family Rrf2 PF02082.15 gi|433593159|ref|YP_007282645.1| - 0.0034 17.4 0.0 0.051 13.7 0.0 2.4 3 0 0 3 3 3 1 Transcriptional regulator DUF883 PF05957.8 gi|433593159|ref|YP_007282645.1| - 0.0037 17.6 0.5 0.0066 16.8 0.4 1.4 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF883) HTH_24 PF13412.1 gi|433593159|ref|YP_007282645.1| - 0.0051 16.1 0.0 0.0088 15.4 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding GntR PF00392.16 gi|433593159|ref|YP_007282645.1| - 0.01 15.2 0.0 0.028 13.8 0.0 1.7 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family HTH_30 PF13556.1 gi|433593159|ref|YP_007282645.1| - 0.015 14.9 0.1 0.027 14.0 0.0 1.5 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain DUF2250 PF10007.4 gi|433593159|ref|YP_007282645.1| - 0.026 14.4 0.0 0.046 13.6 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) RPA_C PF08784.6 gi|433593159|ref|YP_007282645.1| - 0.03 14.7 0.0 0.051 13.9 0.0 1.3 1 0 0 1 1 1 0 Replication protein A C terminal HTH_29 PF13551.1 gi|433593159|ref|YP_007282645.1| - 0.041 14.0 0.0 0.11 12.7 0.0 1.6 2 0 0 2 2 2 0 Winged helix-turn helix NTP_transf_5 PF14907.1 gi|433593160|ref|YP_007282646.1| - 9.6e-08 31.6 0.0 1.4e-07 31.1 0.0 1.2 1 0 0 1 1 1 1 Uncharacterised nucleotidyltransferase DUF1814 PF08843.6 gi|433593160|ref|YP_007282646.1| - 2.7e-06 27.3 0.4 1.2e-05 25.2 0.2 1.9 1 1 1 2 2 2 1 Nucleotidyl transferase of unknown function (DUF1814) Propep_M14 PF02244.11 gi|433593160|ref|YP_007282646.1| - 0.00053 19.5 0.0 0.0018 17.9 0.0 1.9 2 0 0 2 2 2 1 Carboxypeptidase activation peptide Rsa3 PF14615.1 gi|433593161|ref|YP_007282647.1| - 0.13 11.5 0.2 0.28 10.5 0.1 1.5 1 0 0 1 1 1 0 Ribosome-assembly protein 3 TRAM PF01938.15 gi|433593162|ref|YP_007282648.1| - 4.9e-16 58.2 2.3 4.9e-16 58.2 1.6 1.5 2 0 0 2 2 2 1 TRAM domain UvrD-helicase PF00580.16 gi|433593163|ref|YP_007282649.1| - 1.1e-51 176.0 0.1 3.8e-51 174.2 0.0 1.9 2 0 0 2 2 2 1 UvrD/REP helicase N-terminal domain UvrD_C PF13361.1 gi|433593163|ref|YP_007282649.1| - 2.6e-35 122.5 0.0 3e-20 72.9 0.0 2.3 1 1 0 2 2 2 2 UvrD-like helicase C-terminal domain AAA_19 PF13245.1 gi|433593163|ref|YP_007282649.1| - 9.3e-15 54.1 0.8 4.8e-14 51.8 0.0 2.6 4 0 0 4 4 4 1 Part of AAA domain PDDEXK_1 PF12705.2 gi|433593163|ref|YP_007282649.1| - 2.1e-11 43.7 3.9 2.2e-11 43.6 0.4 2.7 3 1 0 3 3 3 1 PD-(D/E)XK nuclease superfamily UvrD_C_2 PF13538.1 gi|433593163|ref|YP_007282649.1| - 7.9e-09 35.5 0.1 0.0045 17.1 0.0 2.9 2 0 0 2 2 2 2 UvrD-like helicase C-terminal domain AAA_30 PF13604.1 gi|433593163|ref|YP_007282649.1| - 2e-05 24.2 0.0 4.2e-05 23.2 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_12 PF13087.1 gi|433593163|ref|YP_007282649.1| - 0.0002 20.8 0.0 0.031 13.6 0.0 2.4 2 0 0 2 2 2 2 AAA domain PhoH PF02562.11 gi|433593163|ref|YP_007282649.1| - 0.035 13.3 0.0 3.4 6.8 0.0 2.3 2 0 0 2 2 2 0 PhoH-like protein PDDEXK_1 PF12705.2 gi|433593164|ref|YP_007282650.1| - 3.7e-18 65.8 1.6 1.3e-17 64.0 1.1 1.9 1 1 0 1 1 1 1 PD-(D/E)XK nuclease superfamily PilZ PF07238.9 gi|433593166|ref|YP_007282652.1| - 0.0077 16.2 0.0 0.092 12.7 0.0 2.0 1 1 0 1 1 1 1 PilZ domain Methyltransf_26 PF13659.1 gi|433593167|ref|YP_007282653.1| - 8.9e-13 48.3 0.0 2e-12 47.1 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain N6_Mtase PF02384.11 gi|433593167|ref|YP_007282653.1| - 3e-11 42.9 0.0 9.3e-11 41.3 0.0 1.8 1 1 0 1 1 1 1 N-6 DNA Methylase Eco57I PF07669.6 gi|433593167|ref|YP_007282653.1| - 9.5e-07 29.1 0.0 2.7e-06 27.6 0.0 1.7 1 0 0 1 1 1 1 Eco57I restriction-modification methylase MTS PF05175.9 gi|433593167|ref|YP_007282653.1| - 1.4e-05 24.5 0.0 0.00088 18.6 0.0 2.3 2 0 0 2 2 2 1 Methyltransferase small domain TaqI_C PF12950.2 gi|433593167|ref|YP_007282653.1| - 1.7e-05 24.5 0.0 4.5e-05 23.1 0.0 1.7 1 1 0 1 1 1 1 TaqI-like C-terminal specificity domain UPF0020 PF01170.13 gi|433593167|ref|YP_007282653.1| - 0.024 14.2 0.0 0.072 12.6 0.0 1.8 1 1 0 1 1 1 0 Putative RNA methylase family UPF0020 DUF35_N PF12172.3 gi|433593167|ref|YP_007282653.1| - 0.085 12.7 0.4 0.22 11.4 0.3 1.6 1 0 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Ribosomal_S27e PF01667.12 gi|433593167|ref|YP_007282653.1| - 0.38 10.3 0.5 0.7 9.4 0.4 1.4 1 0 0 1 1 1 0 Ribosomal protein S27 zf-ribbon_3 PF13248.1 gi|433593167|ref|YP_007282653.1| - 3.2 7.0 4.9 1.4 8.1 1.4 1.9 2 0 0 2 2 2 0 zinc-ribbon domain DDE_Tnp_1 PF01609.16 gi|433593169|ref|YP_007282655.1| - 9.4e-11 41.6 2.7 1.7e-10 40.8 1.9 1.4 1 0 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.6 gi|433593169|ref|YP_007282655.1| - 0.021 14.7 0.1 0.061 13.2 0.1 1.8 1 0 0 1 1 1 0 Transposase domain (DUF772) DDE_Tnp_1_assoc PF13808.1 gi|433593169|ref|YP_007282655.1| - 0.09 12.4 0.2 0.18 11.5 0.1 1.6 1 0 0 1 1 1 0 DDE_Tnp_1-associated AAA_22 PF13401.1 gi|433593170|ref|YP_007282656.1| - 2.2e-09 37.5 0.0 1.6e-08 34.7 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|433593170|ref|YP_007282656.1| - 2.7e-09 37.2 1.2 9.2e-08 32.2 0.1 2.8 1 1 1 2 2 2 1 AAA ATPase domain AAA_18 PF13238.1 gi|433593170|ref|YP_007282656.1| - 4.7e-06 26.9 0.3 2.4e-05 24.6 0.0 2.3 1 1 1 2 2 2 1 AAA domain Penicillinase_R PF03965.11 gi|433593170|ref|YP_007282656.1| - 2.9e-05 24.1 0.0 6.9e-05 22.9 0.0 1.7 1 0 0 1 1 1 1 Penicillinase repressor AAA_17 PF13207.1 gi|433593170|ref|YP_007282656.1| - 0.0001 23.1 3.5 0.00063 20.5 0.0 2.4 1 1 1 2 2 2 1 AAA domain RuvB_N PF05496.7 gi|433593170|ref|YP_007282656.1| - 0.00017 20.7 0.0 0.0013 17.7 0.0 2.1 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_5 PF07728.9 gi|433593170|ref|YP_007282656.1| - 0.00018 21.2 0.0 0.00081 19.1 0.0 2.1 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) NTPase_1 PF03266.10 gi|433593170|ref|YP_007282656.1| - 0.0004 20.1 0.2 0.015 15.0 0.0 2.8 2 1 0 3 3 3 1 NTPase NB-ARC PF00931.17 gi|433593170|ref|YP_007282656.1| - 0.00072 18.5 0.0 0.0011 17.9 0.0 1.3 1 0 0 1 1 1 1 NB-ARC domain AAA PF00004.24 gi|433593170|ref|YP_007282656.1| - 0.00076 19.6 0.0 0.01 16.0 0.0 2.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DUF2075 PF09848.4 gi|433593170|ref|YP_007282656.1| - 0.00096 18.2 0.0 0.0014 17.7 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) Bac_DnaA PF00308.13 gi|433593170|ref|YP_007282656.1| - 0.0018 17.9 0.0 0.0096 15.5 0.0 2.2 1 1 0 1 1 1 1 Bacterial dnaA protein AAA_14 PF13173.1 gi|433593170|ref|YP_007282656.1| - 0.0021 17.9 0.0 0.0051 16.7 0.0 1.6 1 1 0 1 1 1 1 AAA domain Cdc6_C PF09079.6 gi|433593170|ref|YP_007282656.1| - 0.004 16.8 0.2 0.016 14.8 0.1 2.1 1 1 0 1 1 1 1 CDC6, C terminal Arch_ATPase PF01637.13 gi|433593170|ref|YP_007282656.1| - 0.0052 16.5 0.0 0.073 12.7 0.0 2.6 1 1 0 2 2 2 1 Archaeal ATPase DUF2791 PF10923.3 gi|433593170|ref|YP_007282656.1| - 0.0087 14.7 0.0 0.014 14.0 0.0 1.3 1 0 0 1 1 1 1 P-loop Domain of unknown function (DUF2791) AAA_33 PF13671.1 gi|433593170|ref|YP_007282656.1| - 0.011 15.6 1.1 1.4 8.8 0.0 3.0 2 2 1 3 3 3 0 AAA domain RNA_helicase PF00910.17 gi|433593170|ref|YP_007282656.1| - 0.016 15.3 0.0 0.046 13.8 0.0 1.8 1 1 1 2 2 1 0 RNA helicase DUF4194 PF13835.1 gi|433593170|ref|YP_007282656.1| - 0.019 14.4 0.0 0.043 13.2 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4194) PRK PF00485.13 gi|433593170|ref|YP_007282656.1| - 0.019 14.5 0.0 0.048 13.2 0.0 1.7 1 1 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family HTH_20 PF12840.2 gi|433593170|ref|YP_007282656.1| - 0.023 14.4 0.0 0.05 13.4 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain NACHT PF05729.7 gi|433593170|ref|YP_007282656.1| - 0.025 14.2 0.0 0.054 13.1 0.0 1.6 2 0 0 2 2 1 0 NACHT domain DUF258 PF03193.11 gi|433593170|ref|YP_007282656.1| - 0.031 13.4 0.0 0.05 12.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_30 PF13604.1 gi|433593170|ref|YP_007282656.1| - 0.066 12.7 0.7 0.3 10.6 0.0 2.4 2 1 0 2 2 2 0 AAA domain AAA_19 PF13245.1 gi|433593170|ref|YP_007282656.1| - 0.11 12.2 0.0 0.31 10.7 0.0 1.7 1 0 0 1 1 1 0 Part of AAA domain DUF159 PF02586.9 gi|433593171|ref|YP_007282657.1| - 5.1e-61 205.8 0.0 5.7e-61 205.6 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised ACR, COG2135 VP9 PF09625.5 gi|433593172|ref|YP_007282658.1| - 0.068 12.9 0.2 0.17 11.7 0.0 1.7 2 0 0 2 2 2 0 VP9 protein MethyTransf_Reg PF10119.4 gi|433593172|ref|YP_007282658.1| - 0.074 13.5 0.9 0.51 10.8 0.1 2.2 2 0 0 2 2 2 0 Predicted methyltransferase regulatory domain HXXSHH PF07586.6 gi|433593175|ref|YP_007282661.1| - 0.073 11.9 0.6 2 7.2 0.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1552) CorA PF01544.13 gi|433593175|ref|YP_007282661.1| - 0.098 11.6 0.7 0.11 11.5 0.5 1.0 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein MutL_C PF08676.6 gi|433593175|ref|YP_007282661.1| - 0.12 11.9 0.1 0.15 11.6 0.1 1.2 1 0 0 1 1 1 0 MutL C terminal dimerisation domain PilJ PF13675.1 gi|433593175|ref|YP_007282661.1| - 0.14 12.5 2.8 2.7 8.3 0.1 2.0 1 1 1 2 2 2 0 Type IV pili methyl-accepting chemotaxis transducer N-term Spectrin PF00435.16 gi|433593175|ref|YP_007282661.1| - 0.24 11.6 1.8 5.5 7.3 0.0 2.3 2 1 0 2 2 2 0 Spectrin repeat Cdc6_C PF09079.6 gi|433593176|ref|YP_007282662.1| - 9.6e-19 66.8 0.0 2.1e-18 65.8 0.0 1.6 1 0 0 1 1 1 1 CDC6, C terminal AAA_16 PF13191.1 gi|433593176|ref|YP_007282662.1| - 8.9e-13 48.6 0.6 9.4e-12 45.2 0.0 2.5 2 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|433593176|ref|YP_007282662.1| - 1.6e-12 47.7 0.1 4.3e-12 46.3 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA PF00004.24 gi|433593176|ref|YP_007282662.1| - 2.1e-06 27.9 0.3 7.7e-06 26.1 0.2 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DUF815 PF05673.8 gi|433593176|ref|YP_007282662.1| - 9.7e-06 24.6 0.0 1.9e-05 23.7 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF815) NACHT PF05729.7 gi|433593176|ref|YP_007282662.1| - 4.1e-05 23.3 0.0 6.7e-05 22.5 0.0 1.3 1 0 0 1 1 1 1 NACHT domain Sigma54_activat PF00158.21 gi|433593176|ref|YP_007282662.1| - 7.3e-05 22.3 0.3 0.0002 20.8 0.0 1.8 2 0 0 2 2 2 1 Sigma-54 interaction domain Arch_ATPase PF01637.13 gi|433593176|ref|YP_007282662.1| - 0.00027 20.7 0.0 0.00063 19.5 0.0 1.7 2 1 0 2 2 2 1 Archaeal ATPase Sigma54_activ_2 PF14532.1 gi|433593176|ref|YP_007282662.1| - 0.0005 20.1 0.0 0.0011 19.0 0.0 1.6 1 0 0 1 1 1 1 Sigma-54 interaction domain AAA_5 PF07728.9 gi|433593176|ref|YP_007282662.1| - 0.0006 19.5 0.1 0.0029 17.3 0.0 2.1 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) NB-ARC PF00931.17 gi|433593176|ref|YP_007282662.1| - 0.00078 18.3 0.1 0.0011 17.8 0.0 1.2 1 0 0 1 1 1 1 NB-ARC domain PhoH PF02562.11 gi|433593176|ref|YP_007282662.1| - 0.0079 15.4 0.5 3.3 6.8 0.1 2.5 2 0 0 2 2 2 2 PhoH-like protein RNA_helicase PF00910.17 gi|433593176|ref|YP_007282662.1| - 0.013 15.6 0.0 0.043 14.0 0.0 2.0 2 0 0 2 2 2 0 RNA helicase AAA_17 PF13207.1 gi|433593176|ref|YP_007282662.1| - 0.017 15.9 0.4 0.081 13.7 0.2 2.6 1 1 0 1 1 1 0 AAA domain T2SE PF00437.15 gi|433593176|ref|YP_007282662.1| - 0.033 13.0 0.0 0.076 11.9 0.0 1.6 2 0 0 2 2 2 0 Type II/IV secretion system protein ABC_tran PF00005.22 gi|433593176|ref|YP_007282662.1| - 0.039 14.2 0.4 0.11 12.8 0.3 2.0 1 1 0 1 1 1 0 ABC transporter AAA_25 PF13481.1 gi|433593176|ref|YP_007282662.1| - 0.09 12.1 0.0 1.7 8.0 0.0 2.4 2 0 0 2 2 2 0 AAA domain DEAD PF00270.24 gi|433593176|ref|YP_007282662.1| - 0.43 10.0 2.0 11 5.4 1.3 2.4 1 1 0 1 1 1 0 DEAD/DEAH box helicase CSTF2_hinge PF14327.1 gi|433593177|ref|YP_007282663.1| - 0.13 12.3 0.0 0.2 11.7 0.0 1.3 1 0 0 1 1 1 0 Hinge domain of cleavage stimulation factor subunit 2 MarR_2 PF12802.2 gi|433593178|ref|YP_007282664.1| - 9.7e-16 57.1 3.0 1.2e-08 34.5 0.5 2.9 3 0 0 3 3 3 2 MarR family TrmB PF01978.14 gi|433593178|ref|YP_007282664.1| - 4.3e-09 35.9 0.2 0.0025 17.5 0.0 2.6 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|433593178|ref|YP_007282664.1| - 6.9e-09 35.2 0.0 0.0023 17.5 0.0 2.5 2 0 0 2 2 2 2 MarR family HTH_24 PF13412.1 gi|433593178|ref|YP_007282664.1| - 3.6e-08 32.6 0.1 0.0036 16.6 0.0 2.4 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_27 PF13463.1 gi|433593178|ref|YP_007282664.1| - 3.9e-08 33.4 0.8 1e-05 25.7 0.2 2.6 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_23 PF13384.1 gi|433593178|ref|YP_007282664.1| - 8.6e-08 31.6 0.1 0.0048 16.5 0.0 2.7 2 0 0 2 2 2 2 Homeodomain-like domain Rrf2 PF02082.15 gi|433593178|ref|YP_007282664.1| - 1.5e-07 31.4 0.0 0.0063 16.6 0.0 2.6 2 0 0 2 2 2 2 Transcriptional regulator HTH_29 PF13551.1 gi|433593178|ref|YP_007282664.1| - 1.7e-07 31.3 0.3 0.019 15.1 0.0 2.4 1 1 1 2 2 2 2 Winged helix-turn helix HTH_38 PF13936.1 gi|433593178|ref|YP_007282664.1| - 3.1e-06 26.6 0.0 0.09 12.3 0.0 2.7 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_20 PF12840.2 gi|433593178|ref|YP_007282664.1| - 3.4e-06 26.7 0.3 0.013 15.3 0.1 2.6 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_IclR PF09339.5 gi|433593178|ref|YP_007282664.1| - 5.7e-06 25.8 0.0 0.079 12.5 0.0 2.7 2 0 0 2 2 2 2 IclR helix-turn-helix domain HTH_28 PF13518.1 gi|433593178|ref|YP_007282664.1| - 0.00012 22.0 0.1 0.09 12.8 0.0 2.8 2 0 0 2 2 2 1 Helix-turn-helix domain Penicillinase_R PF03965.11 gi|433593178|ref|YP_007282664.1| - 0.00068 19.7 0.0 1.3 9.1 0.0 2.4 1 1 1 2 2 2 2 Penicillinase repressor GntR PF00392.16 gi|433593178|ref|YP_007282664.1| - 0.00076 18.8 0.0 0.66 9.4 0.0 2.9 3 0 0 3 3 3 1 Bacterial regulatory proteins, gntR family HTH_5 PF01022.15 gi|433593178|ref|YP_007282664.1| - 0.0011 18.5 0.0 0.35 10.5 0.0 2.7 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_Crp_2 PF13545.1 gi|433593178|ref|YP_007282664.1| - 0.0015 18.2 0.4 1.1 9.0 0.0 2.7 3 0 0 3 3 2 1 Crp-like helix-turn-helix domain HTH_41 PF14502.1 gi|433593178|ref|YP_007282664.1| - 0.0022 17.5 0.0 0.018 14.6 0.0 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain GerE PF00196.14 gi|433593178|ref|YP_007282664.1| - 0.0048 16.1 0.0 2.5 7.4 0.0 2.3 2 0 0 2 2 2 2 Bacterial regulatory proteins, luxR family Crp PF00325.15 gi|433593178|ref|YP_007282664.1| - 0.0061 16.0 0.8 0.045 13.2 0.2 2.3 2 0 0 2 2 2 1 Bacterial regulatory proteins, crp family HTH_Tnp_Tc3_1 PF11427.3 gi|433593178|ref|YP_007282664.1| - 0.011 15.3 0.3 11 5.7 0.0 3.2 3 0 0 3 3 3 0 Tc3 transposase LZ_Tnp_IS481 PF13011.1 gi|433593178|ref|YP_007282664.1| - 0.013 15.7 0.0 0.029 14.7 0.0 1.5 1 0 0 1 1 1 0 leucine-zipper of insertion element IS481 RPA_C PF08784.6 gi|433593178|ref|YP_007282664.1| - 0.018 15.4 0.0 0.049 14.0 0.0 1.7 2 0 0 2 2 1 0 Replication protein A C terminal HTH_36 PF13730.1 gi|433593178|ref|YP_007282664.1| - 0.045 13.8 0.1 1.4 9.0 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain Phage_rep_org_N PF09681.5 gi|433593178|ref|YP_007282664.1| - 0.062 12.8 0.0 8.5 5.9 0.0 2.4 2 0 0 2 2 2 0 N-terminal phage replisome organiser (Phage_rep_org_N) UPF0122 PF04297.9 gi|433593178|ref|YP_007282664.1| - 0.083 12.9 0.0 0.19 11.7 0.0 1.6 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like HTH_11 PF08279.7 gi|433593178|ref|YP_007282664.1| - 0.1 12.2 0.2 11 5.7 0.0 3.1 3 0 0 3 3 3 0 HTH domain PaaX PF07848.7 gi|433593178|ref|YP_007282664.1| - 0.11 12.5 0.0 0.34 10.9 0.0 1.8 1 0 0 1 1 1 0 PaaX-like protein AAA_14 PF13173.1 gi|433593179|ref|YP_007282665.1| - 1.2e-07 31.6 0.1 5.3e-07 29.5 0.0 2.1 3 0 0 3 3 3 1 AAA domain AAA_25 PF13481.1 gi|433593179|ref|YP_007282665.1| - 1.2e-05 24.7 0.0 2.7e-05 23.6 0.0 1.6 1 0 0 1 1 1 1 AAA domain RNA_helicase PF00910.17 gi|433593179|ref|YP_007282665.1| - 0.0001 22.4 0.1 0.00072 19.7 0.0 2.4 2 1 0 2 2 2 1 RNA helicase AAA_22 PF13401.1 gi|433593179|ref|YP_007282665.1| - 0.00017 21.7 0.1 0.0011 19.1 0.1 2.3 1 1 0 1 1 1 1 AAA domain Arch_ATPase PF01637.13 gi|433593179|ref|YP_007282665.1| - 0.0014 18.3 0.0 0.0024 17.5 0.0 1.4 1 0 0 1 1 1 1 Archaeal ATPase AAA_16 PF13191.1 gi|433593179|ref|YP_007282665.1| - 0.0043 17.0 0.0 0.014 15.4 0.0 1.9 1 1 0 1 1 1 1 AAA ATPase domain HTH_23 PF13384.1 gi|433593179|ref|YP_007282665.1| - 0.011 15.3 0.0 0.04 13.5 0.0 2.0 1 0 0 1 1 1 0 Homeodomain-like domain DUF3322 PF11795.3 gi|433593179|ref|YP_007282665.1| - 0.014 15.0 0.2 0.39 10.3 0.1 2.4 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria N-term (DUF3322) NACHT PF05729.7 gi|433593179|ref|YP_007282665.1| - 0.015 15.0 0.1 0.031 13.9 0.1 1.5 1 0 0 1 1 1 0 NACHT domain AAA_24 PF13479.1 gi|433593179|ref|YP_007282665.1| - 0.021 14.4 0.0 0.037 13.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.12 gi|433593179|ref|YP_007282665.1| - 0.022 14.1 0.1 0.44 9.9 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA PF00004.24 gi|433593179|ref|YP_007282665.1| - 0.027 14.6 0.0 0.062 13.4 0.0 1.6 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_23 PF13476.1 gi|433593179|ref|YP_007282665.1| - 0.046 14.0 0.0 0.09 13.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain Sigma70_r4_2 PF08281.7 gi|433593179|ref|YP_007282665.1| - 0.05 13.0 0.0 0.38 10.2 0.0 2.4 2 0 0 2 2 2 0 Sigma-70, region 4 NB-ARC PF00931.17 gi|433593179|ref|YP_007282665.1| - 0.053 12.3 0.0 0.091 11.6 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain HTH_28 PF13518.1 gi|433593179|ref|YP_007282665.1| - 0.063 13.2 0.2 0.17 11.8 0.1 1.9 1 0 0 1 1 1 0 Helix-turn-helix domain ABC_tran PF00005.22 gi|433593179|ref|YP_007282665.1| - 0.15 12.3 0.0 0.3 11.3 0.0 1.5 1 0 0 1 1 1 0 ABC transporter MMR_HSR1 PF01926.18 gi|433593179|ref|YP_007282665.1| - 0.16 11.9 0.0 0.33 10.8 0.0 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase Lactamase_B_2 PF12706.2 gi|433593180|ref|YP_007282666.1| - 4.5e-12 45.9 0.3 1.3e-11 44.4 0.2 1.7 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|433593180|ref|YP_007282666.1| - 1.9e-10 40.7 4.1 6.3e-10 39.0 2.8 1.9 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily PSK_trans_fac PF07704.6 gi|433593180|ref|YP_007282666.1| - 1.3 9.7 6.1 0.25 12.0 0.3 2.8 3 0 0 3 3 3 0 Rv0623-like transcription factor Piwi PF02171.12 gi|433593181|ref|YP_007282667.1| - 1.2e-12 47.4 0.0 2.6e-09 36.5 0.0 2.3 2 0 0 2 2 2 2 Piwi domain PLDc_2 PF13091.1 gi|433593182|ref|YP_007282668.1| - 4.4e-06 26.4 0.0 9.8e-06 25.3 0.0 1.6 1 0 0 1 1 1 1 PLD-like domain DUF3471 PF11954.3 gi|433593182|ref|YP_007282668.1| - 0.083 12.7 0.7 1.2 9.0 0.0 2.8 3 0 0 3 3 3 0 Domain of unknown function (DUF3471) MatK_N PF01824.13 gi|433593182|ref|YP_007282668.1| - 0.2 10.7 0.0 15 4.5 0.0 2.1 2 0 0 2 2 2 0 MatK/TrnK amino terminal region Auxin_inducible PF02519.9 gi|433593184|ref|YP_007282670.1| - 0.058 13.4 0.0 14 5.8 0.0 2.4 2 0 0 2 2 2 0 Auxin responsive protein ResIII PF04851.10 gi|433593185|ref|YP_007282671.1| - 4.3e-20 72.3 0.0 2.4e-19 69.8 0.0 2.2 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit DEAD PF00270.24 gi|433593185|ref|YP_007282671.1| - 1.2e-10 41.1 0.0 2.3e-10 40.1 0.0 1.4 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|433593185|ref|YP_007282671.1| - 1.5e-07 31.1 0.0 3.6e-07 29.9 0.0 1.7 1 0 0 1 1 1 1 Helicase conserved C-terminal domain SNF2_N PF00176.18 gi|433593185|ref|YP_007282671.1| - 2.7e-06 26.4 0.0 1.1e-05 24.3 0.0 2.0 1 1 0 1 1 1 1 SNF2 family N-terminal domain DUF955 PF06114.8 gi|433593186|ref|YP_007282672.1| - 0.00017 21.3 0.1 0.00028 20.5 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF955) SprT-like PF10263.4 gi|433593186|ref|YP_007282672.1| - 0.016 14.8 3.4 0.068 12.8 1.9 2.2 1 1 1 2 2 2 0 SprT-like family Peptidase_MA_2 PF13485.1 gi|433593186|ref|YP_007282672.1| - 0.022 14.8 0.0 0.049 13.6 0.0 1.6 1 0 0 1 1 1 0 Peptidase MA superfamily DUF2268 PF10026.4 gi|433593186|ref|YP_007282672.1| - 0.039 13.3 0.0 0.073 12.4 0.0 1.4 1 0 0 1 1 1 0 Predicted Zn-dependent protease (DUF2268) ACP53EA PF06313.6 gi|433593188|ref|YP_007282674.1| - 0.065 13.1 0.0 0.076 12.9 0.0 1.2 1 0 0 1 1 1 0 Drosophila ACP53EA protein DUF993 PF06187.6 gi|433593189|ref|YP_007282675.1| - 0.0023 16.5 0.1 0.0034 15.9 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF993) YqhG PF11079.3 gi|433593189|ref|YP_007282675.1| - 0.063 12.0 0.3 0.094 11.5 0.2 1.2 1 0 0 1 1 1 0 Bacterial protein YqhG of unknown function Pentapeptide PF00805.17 gi|433593191|ref|YP_007282677.1| - 8.5e-77 251.5 78.6 4e-11 41.8 2.4 11.6 5 4 5 11 11 11 11 Pentapeptide repeats (8 copies) Pentapeptide_4 PF13599.1 gi|433593191|ref|YP_007282677.1| - 3.5e-57 190.1 9.8 1.5e-11 43.8 0.5 6.5 1 1 4 6 6 6 6 Pentapeptide repeats (9 copies) Pentapeptide_3 PF13576.1 gi|433593191|ref|YP_007282677.1| - 1e-45 153.3 23.3 3.7e-06 26.7 0.0 10.5 4 3 6 10 10 10 10 Pentapeptide repeats (9 copies) ExoD PF06055.7 gi|433593191|ref|YP_007282677.1| - 0.0027 16.8 0.1 0.0047 16.0 0.0 1.3 1 0 0 1 1 1 1 Exopolysaccharide synthesis, ExoD OprD PF03573.8 gi|433593191|ref|YP_007282677.1| - 0.0072 15.1 1.3 0.47 9.1 0.0 3.4 2 1 1 4 4 4 1 outer membrane porin, OprD family Methyltransf_26 PF13659.1 gi|433593192|ref|YP_007282678.1| - 4.3e-06 26.7 0.6 0.00018 21.5 0.4 2.6 1 1 0 1 1 1 1 Methyltransferase domain N6_N4_Mtase PF01555.13 gi|433593192|ref|YP_007282678.1| - 0.001 18.6 0.0 0.56 9.6 0.0 2.3 2 0 0 2 2 2 2 DNA methylase UPF0020 PF01170.13 gi|433593192|ref|YP_007282678.1| - 0.026 14.1 0.0 4.6 6.7 0.0 2.3 2 0 0 2 2 2 0 Putative RNA methylase family UPF0020 IBR PF01485.16 gi|433593192|ref|YP_007282678.1| - 1.7 8.5 12.6 0.12 12.2 4.5 2.2 2 1 1 3 3 3 0 IBR domain Mrr_cat PF04471.7 gi|433593193|ref|YP_007282679.1| - 2.8e-28 98.0 0.0 5e-28 97.2 0.0 1.4 1 0 0 1 1 1 1 Restriction endonuclease Zn_Tnp_IS1595 PF12760.2 gi|433593193|ref|YP_007282679.1| - 0.029 14.1 5.8 0.45 10.3 0.1 3.4 2 1 1 3 3 3 0 Transposase zinc-ribbon domain Siva PF05458.7 gi|433593193|ref|YP_007282679.1| - 0.18 11.3 1.9 0.27 10.7 1.3 1.3 1 0 0 1 1 1 0 Cd27 binding protein (Siva) DZR PF12773.2 gi|433593193|ref|YP_007282679.1| - 1.8 8.4 7.9 6.5 6.6 5.5 1.8 1 1 0 1 1 1 0 Double zinc ribbon SNN_transmemb PF09049.5 gi|433593193|ref|YP_007282679.1| - 3.3 7.4 8.8 6.7 6.4 6.1 1.5 1 0 0 1 1 1 0 Stannin transmembrane DUF164 PF02591.10 gi|433593193|ref|YP_007282679.1| - 3.7 7.4 6.1 6.3 6.7 0.1 3.3 2 1 1 3 3 3 0 Putative zinc ribbon domain zf-RING_5 PF14634.1 gi|433593193|ref|YP_007282679.1| - 4 7.2 7.7 20 4.9 4.8 2.2 2 0 0 2 2 2 0 zinc-RING finger domain Abhydrolase_6 PF12697.2 gi|433593195|ref|YP_007282681.1| - 2.1e-35 122.6 2.1 3e-35 122.1 1.5 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|433593195|ref|YP_007282681.1| - 2.5e-24 86.1 0.1 4.9e-24 85.1 0.0 1.5 2 0 0 2 2 2 1 alpha/beta hydrolase fold Abhydrolase_5 PF12695.2 gi|433593195|ref|YP_007282681.1| - 7.1e-16 58.2 0.0 2e-15 56.7 0.0 1.8 1 1 0 1 1 1 1 Alpha/beta hydrolase family DLH PF01738.13 gi|433593195|ref|YP_007282681.1| - 1.7e-05 24.2 0.0 0.067 12.4 0.0 2.3 2 0 0 2 2 2 2 Dienelactone hydrolase family Hydrolase_4 PF12146.3 gi|433593195|ref|YP_007282681.1| - 0.0054 16.5 0.1 0.011 15.6 0.1 1.5 1 0 0 1 1 1 1 Putative lysophospholipase Esterase PF00756.15 gi|433593195|ref|YP_007282681.1| - 0.067 12.6 0.0 0.12 11.7 0.0 1.5 1 0 0 1 1 1 0 Putative esterase HTH_10 PF04967.7 gi|433593196|ref|YP_007282682.1| - 3.3e-18 65.0 0.0 5.4e-18 64.3 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain HTH_24 PF13412.1 gi|433593196|ref|YP_007282682.1| - 2.5e-05 23.5 0.0 4.5e-05 22.7 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|433593196|ref|YP_007282682.1| - 0.0003 20.3 0.2 0.00091 18.8 0.0 1.9 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family Sigma70_r4_2 PF08281.7 gi|433593196|ref|YP_007282682.1| - 0.002 17.5 0.0 0.0068 15.8 0.0 1.9 2 0 0 2 2 2 1 Sigma-70, region 4 Sigma70_r4 PF04545.11 gi|433593196|ref|YP_007282682.1| - 0.0045 16.2 0.2 0.015 14.5 0.1 1.9 1 0 0 1 1 1 1 Sigma-70, region 4 HrcA_DNA-bdg PF03444.10 gi|433593196|ref|YP_007282682.1| - 0.022 14.1 0.0 0.053 12.9 0.0 1.6 2 0 0 2 2 2 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding GerE PF00196.14 gi|433593196|ref|YP_007282682.1| - 0.024 13.9 0.1 0.49 9.7 0.0 2.4 3 0 0 3 3 3 0 Bacterial regulatory proteins, luxR family Fe_dep_repress PF01325.14 gi|433593196|ref|YP_007282682.1| - 0.039 13.9 0.0 0.1 12.5 0.0 1.7 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_23 PF13384.1 gi|433593196|ref|YP_007282682.1| - 0.04 13.5 0.1 0.12 12.0 0.0 1.8 2 0 0 2 2 2 0 Homeodomain-like domain HTH_28 PF13518.1 gi|433593196|ref|YP_007282682.1| - 0.076 13.0 0.0 0.2 11.6 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain MarR_2 PF12802.2 gi|433593196|ref|YP_007282682.1| - 0.089 12.4 0.0 0.47 10.1 0.0 2.1 2 0 0 2 2 2 0 MarR family Complex1_49kDa PF00346.14 gi|433593197|ref|YP_007282683.1| - 7.8e-65 218.5 0.1 7.7e-41 139.8 0.2 2.1 1 1 1 2 2 2 2 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Complex1_30kDa PF00329.14 gi|433593197|ref|YP_007282683.1| - 6.2e-31 106.6 0.1 1.1e-30 105.8 0.0 1.4 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit DNA_ligase_IV PF11411.3 gi|433593198|ref|YP_007282684.1| - 0.11 12.2 0.4 0.24 11.1 0.3 1.5 1 0 0 1 1 1 0 DNA ligase IV DUF3268 PF11672.3 gi|433593198|ref|YP_007282684.1| - 0.16 12.0 2.5 0.18 11.8 1.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3268) Methyltransf_11 PF08241.7 gi|433593199|ref|YP_007282685.1| - 2.1e-23 82.6 0.0 6.6e-23 81.0 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|433593199|ref|YP_007282685.1| - 3.5e-21 75.5 0.0 4.3e-21 75.2 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|433593199|ref|YP_007282685.1| - 6.8e-18 64.7 0.0 8.6e-18 64.3 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|433593199|ref|YP_007282685.1| - 8.2e-15 54.5 0.0 1.1e-14 54.1 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.7 gi|433593199|ref|YP_007282685.1| - 2e-12 47.4 0.0 2.8e-12 46.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|433593199|ref|YP_007282685.1| - 3.6e-11 43.3 0.0 6e-11 42.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|433593199|ref|YP_007282685.1| - 1.4e-10 41.7 0.0 2.1e-10 41.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|433593199|ref|YP_007282685.1| - 1.6e-07 31.3 0.0 2.4e-07 30.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.7 gi|433593199|ref|YP_007282685.1| - 9.7e-06 25.0 0.0 1.5e-05 24.5 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW CMAS PF02353.15 gi|433593199|ref|YP_007282685.1| - 0.00041 19.5 0.0 0.00062 18.9 0.0 1.3 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase MTS PF05175.9 gi|433593199|ref|YP_007282685.1| - 0.0019 17.5 0.0 0.003 16.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain UPF0020 PF01170.13 gi|433593199|ref|YP_007282685.1| - 0.0076 15.8 0.0 0.011 15.3 0.0 1.3 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_32 PF13679.1 gi|433593199|ref|YP_007282685.1| - 0.033 13.8 0.0 0.053 13.2 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain FmrO PF07091.6 gi|433593199|ref|YP_007282685.1| - 0.057 12.4 0.0 0.077 11.9 0.0 1.1 1 0 0 1 1 1 0 Ribosomal RNA methyltransferase (FmrO) Pox_MCEL PF03291.11 gi|433593199|ref|YP_007282685.1| - 0.061 12.1 0.0 0.076 11.8 0.0 1.1 1 0 0 1 1 1 0 mRNA capping enzyme PCMT PF01135.14 gi|433593199|ref|YP_007282685.1| - 0.068 12.6 0.0 0.094 12.2 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_29 PF03141.11 gi|433593199|ref|YP_007282685.1| - 0.11 10.8 0.0 0.13 10.5 0.0 1.1 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase DUF3784 PF12650.2 gi|433593200|ref|YP_007282686.1| - 1.2e-05 25.2 0.6 1.5e-05 24.8 0.4 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF3784) DUF973 PF06157.6 gi|433593200|ref|YP_007282686.1| - 0.00018 20.6 1.7 0.00021 20.3 1.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF973) Cation_efflux PF01545.16 gi|433593200|ref|YP_007282686.1| - 0.0021 17.2 4.3 0.0026 16.8 3.0 1.0 1 0 0 1 1 1 1 Cation efflux family DUF3185 PF11381.3 gi|433593200|ref|YP_007282686.1| - 0.017 14.8 5.0 0.089 12.5 3.4 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF3185) SDF PF00375.13 gi|433593200|ref|YP_007282686.1| - 0.034 12.9 0.2 0.034 12.9 0.1 1.4 2 0 0 2 2 2 0 Sodium:dicarboxylate symporter family SdpI PF13630.1 gi|433593200|ref|YP_007282686.1| - 0.039 13.6 7.2 1.5 8.5 1.9 2.1 2 0 0 2 2 2 0 SdpI/YhfL protein family NfeD PF01957.13 gi|433593200|ref|YP_007282686.1| - 0.65 10.1 4.8 3 7.9 0.2 2.1 2 0 0 2 2 2 0 NfeD-like C-terminal, partner-binding Amidohydro_1 PF01979.15 gi|433593201|ref|YP_007282687.1| - 8e-33 114.4 0.0 1.3e-32 113.7 0.0 1.3 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.6 gi|433593201|ref|YP_007282687.1| - 1.1e-18 67.6 1.5 1.4e-13 50.8 0.3 2.3 2 0 0 2 2 2 2 Amidohydrolase family Amidohydro_4 PF13147.1 gi|433593201|ref|YP_007282687.1| - 5.4e-14 52.8 9.0 3.1e-13 50.3 6.2 2.2 1 1 0 1 1 1 1 Amidohydrolase Amidohydro_5 PF13594.1 gi|433593201|ref|YP_007282687.1| - 9.4e-14 50.9 0.6 6e-13 48.3 0.1 2.4 2 0 0 2 2 2 1 Amidohydrolase DZR PF12773.2 gi|433593202|ref|YP_007282688.1| - 0.0084 15.9 1.0 0.026 14.3 0.7 1.6 1 1 0 1 1 1 1 Double zinc ribbon Nudix_N_2 PF14803.1 gi|433593202|ref|YP_007282688.1| - 0.0084 15.7 1.5 1.3 8.7 0.1 2.7 2 0 0 2 2 2 1 Nudix N-terminal DUF2318 PF10080.4 gi|433593202|ref|YP_007282688.1| - 0.011 15.4 0.1 0.014 15.1 0.1 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2318) DRP PF06044.7 gi|433593202|ref|YP_007282688.1| - 0.029 13.3 0.5 0.05 12.6 0.3 1.4 1 1 0 1 1 1 0 Dam-replacing family GFA PF04828.9 gi|433593202|ref|YP_007282688.1| - 0.051 13.5 1.5 1.8 8.5 0.2 2.2 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme zinc-ribbons_6 PF07191.7 gi|433593202|ref|YP_007282688.1| - 0.057 13.2 0.1 0.17 11.7 0.4 1.6 2 0 0 2 2 2 0 zinc-ribbons Lar_restr_allev PF14354.1 gi|433593202|ref|YP_007282688.1| - 0.061 13.6 3.1 0.2 12.0 2.2 1.9 1 1 0 1 1 1 0 Restriction alleviation protein Lar C1_1 PF00130.17 gi|433593202|ref|YP_007282688.1| - 0.072 12.8 0.9 0.12 12.1 0.6 1.3 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zinc_ribbon_2 PF13240.1 gi|433593202|ref|YP_007282688.1| - 0.084 12.3 4.1 2.7 7.5 0.1 2.6 3 0 0 3 3 3 0 zinc-ribbon domain UPF0547 PF10571.4 gi|433593202|ref|YP_007282688.1| - 0.1 12.2 1.4 0.78 9.4 0.9 2.2 1 1 1 2 2 2 0 Uncharacterised protein family UPF0547 zf-ribbon_3 PF13248.1 gi|433593202|ref|YP_007282688.1| - 0.36 10.1 7.6 1.5 8.0 3.6 2.7 2 1 2 4 4 4 0 zinc-ribbon domain DNA_ligase_ZBD PF03119.11 gi|433593202|ref|YP_007282688.1| - 0.86 9.3 3.7 1 9.1 0.3 2.5 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Zn-ribbon_8 PF09723.5 gi|433593203|ref|YP_007282689.1| - 0.093 12.6 0.9 6.1 6.8 0.0 2.3 2 0 0 2 2 2 0 Zinc ribbon domain OrfB_Zn_ribbon PF07282.6 gi|433593203|ref|YP_007282689.1| - 0.1 12.3 0.1 0.19 11.4 0.1 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain DUF3797 PF12677.2 gi|433593203|ref|YP_007282689.1| - 1.2 8.8 4.4 4.3 7.0 0.2 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) PDDEXK_1 PF12705.2 gi|433593204|ref|YP_007282690.1| - 0.11 11.8 0.2 0.14 11.4 0.1 1.3 1 0 0 1 1 1 0 PD-(D/E)XK nuclease superfamily NIR_SIR_ferr PF03460.12 gi|433593207|ref|YP_007282693.1| - 0.11 12.1 0.0 3.8 7.2 0.0 2.2 2 0 0 2 2 2 0 Nitrite/Sulfite reductase ferredoxin-like half domain zinc_ribbon_2 PF13240.1 gi|433593209|ref|YP_007282695.1| - 0.034 13.6 2.2 0.034 13.6 1.5 2.6 3 0 0 3 3 3 0 zinc-ribbon domain DZR PF12773.2 gi|433593209|ref|YP_007282695.1| - 0.079 12.7 9.0 0.39 10.5 1.1 2.8 3 0 0 3 3 3 0 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|433593209|ref|YP_007282695.1| - 0.86 8.8 11.0 0.078 12.2 2.5 2.7 3 0 0 3 3 3 0 zinc-ribbon domain RNA_POL_M_15KD PF02150.11 gi|433593209|ref|YP_007282695.1| - 3 7.5 10.1 4.6 7.0 0.1 3.6 3 1 0 3 3 3 0 RNA polymerases M/15 Kd subunit OrfB_Zn_ribbon PF07282.6 gi|433593210|ref|YP_007282696.1| - 6.6e-23 80.1 1.6 6.6e-23 80.1 1.1 1.7 2 0 0 2 2 2 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|433593210|ref|YP_007282696.1| - 2.2e-11 43.6 0.0 3.6e-11 42.9 0.0 1.3 1 0 0 1 1 1 1 Probable transposase DZR PF12773.2 gi|433593210|ref|YP_007282696.1| - 0.015 15.0 3.6 0.036 13.8 2.5 1.6 1 0 0 1 1 1 0 Double zinc ribbon TF_Zn_Ribbon PF08271.7 gi|433593210|ref|YP_007282696.1| - 0.11 11.8 1.3 2.5 7.4 0.0 2.7 1 1 1 2 2 2 0 TFIIB zinc-binding CIAPIN1 PF05093.8 gi|433593210|ref|YP_007282696.1| - 0.12 12.4 2.9 1.2 9.2 0.9 2.5 2 1 0 2 2 2 0 Cytokine-induced anti-apoptosis inhibitor 1, Fe-S biogenesis DNA_RNApol_7kD PF03604.8 gi|433593210|ref|YP_007282696.1| - 1.7 8.1 5.7 2.7 7.5 2.0 2.6 2 1 1 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit Tnp_zf-ribbon_2 PF13842.1 gi|433593210|ref|YP_007282696.1| - 2.6 8.5 5.2 5.2 7.5 2.8 2.0 1 1 1 2 2 2 0 DDE_Tnp_1-like zinc-ribbon zinc_ribbon_2 PF13240.1 gi|433593210|ref|YP_007282696.1| - 6.2 6.4 5.7 47 3.6 0.3 2.3 1 1 2 3 3 3 0 zinc-ribbon domain TFIIB PF00382.14 gi|433593211|ref|YP_007282697.1| - 8.2e-32 108.8 2.6 4.6e-18 64.7 0.3 2.4 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|433593211|ref|YP_007282697.1| - 3.6e-12 45.3 2.5 6.4e-12 44.5 1.7 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding DZR PF12773.2 gi|433593211|ref|YP_007282697.1| - 0.024 14.4 1.0 0.053 13.3 0.7 1.5 1 0 0 1 1 1 0 Double zinc ribbon OrfB_Zn_ribbon PF07282.6 gi|433593211|ref|YP_007282697.1| - 0.026 14.1 1.9 0.08 12.6 0.9 2.1 2 0 0 2 2 2 0 Putative transposase DNA-binding domain HTH_24 PF13412.1 gi|433593211|ref|YP_007282697.1| - 0.038 13.3 0.1 0.12 11.7 0.0 1.9 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding zinc-ribbons_6 PF07191.7 gi|433593211|ref|YP_007282697.1| - 0.073 12.8 0.8 0.18 11.6 0.6 1.6 1 0 0 1 1 1 0 zinc-ribbons Prok-RING_1 PF14446.1 gi|433593211|ref|YP_007282697.1| - 0.25 11.1 2.9 0.52 10.0 2.0 1.5 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 UPF0547 PF10571.4 gi|433593211|ref|YP_007282697.1| - 0.37 10.5 2.2 0.8 9.4 1.5 1.5 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 PEPcase PF00311.12 gi|433593212|ref|YP_007282698.1| - 3.8e-233 775.8 0.0 4.7e-233 775.5 0.0 1.1 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxylase PEPcase_2 PF14010.1 gi|433593212|ref|YP_007282698.1| - 0.00012 20.5 0.0 0.00023 19.6 0.0 1.4 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxylase DUF4070 PF13282.1 gi|433593212|ref|YP_007282698.1| - 0.051 13.1 0.0 1.1 8.8 0.1 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4070) Peptidase_S9 PF00326.16 gi|433593213|ref|YP_007282699.1| - 7.6e-17 61.2 0.1 1.3e-16 60.5 0.1 1.2 1 0 0 1 1 1 1 Prolyl oligopeptidase family PD40 PF07676.7 gi|433593213|ref|YP_007282699.1| - 1.7e-06 27.5 5.7 0.013 15.1 0.1 5.2 5 0 0 5 5 5 2 WD40-like Beta Propeller Repeat DPPIV_N PF00930.16 gi|433593213|ref|YP_007282699.1| - 9.5e-05 21.1 0.0 1.1 7.7 0.0 3.8 3 1 0 4 4 4 2 Dipeptidyl peptidase IV (DPP IV) N-terminal region Abhydrolase_5 PF12695.2 gi|433593213|ref|YP_007282699.1| - 0.00065 19.4 0.0 0.0019 17.9 0.0 1.8 2 0 0 2 2 2 1 Alpha/beta hydrolase family DLH PF01738.13 gi|433593213|ref|YP_007282699.1| - 0.0052 16.0 0.0 0.0087 15.3 0.0 1.3 1 0 0 1 1 1 1 Dienelactone hydrolase family Gmad1 PF10647.4 gi|433593213|ref|YP_007282699.1| - 0.0076 15.6 8.6 0.0084 15.5 1.9 2.7 2 1 0 2 2 2 1 Lipoprotein LpqB beta-propeller domain 4HBT_2 PF13279.1 gi|433593214|ref|YP_007282700.1| - 1e-16 61.4 0.0 1.2e-16 61.2 0.0 1.0 1 0 0 1 1 1 1 Thioesterase-like superfamily 4HBT PF03061.17 gi|433593214|ref|YP_007282700.1| - 4.4e-14 52.3 0.1 6.6e-14 51.8 0.0 1.3 1 0 0 1 1 1 1 Thioesterase superfamily Acyl-ACP_TE PF01643.12 gi|433593214|ref|YP_007282700.1| - 2.2e-07 30.1 0.0 4.4e-07 29.1 0.0 1.6 1 1 0 1 1 1 1 Acyl-ACP thioesterase Rhodanese PF00581.15 gi|433593214|ref|YP_007282700.1| - 0.014 15.7 0.1 0.72 10.2 0.0 2.1 1 1 1 2 2 2 0 Rhodanese-like domain DUF162 PF02589.10 gi|433593215|ref|YP_007282701.1| - 2.9e-41 141.0 0.2 5.1e-41 140.2 0.2 1.4 1 0 0 1 1 1 1 Uncharacterised ACR, YkgG family COG1556 Fer4_8 PF13183.1 gi|433593215|ref|YP_007282701.1| - 8.4e-09 35.3 5.5 1.7e-08 34.3 3.8 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|433593215|ref|YP_007282701.1| - 8.6e-08 32.4 4.9 3.5e-05 24.1 0.5 2.7 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|433593215|ref|YP_007282701.1| - 1.7e-06 28.2 4.3 3.6e-06 27.2 3.0 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|433593215|ref|YP_007282701.1| - 2.5e-05 24.5 7.4 6.2e-05 23.3 5.2 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|433593215|ref|YP_007282701.1| - 0.00013 22.1 10.9 0.0019 18.3 7.9 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|433593215|ref|YP_007282701.1| - 0.00016 21.3 10.6 0.013 15.3 1.6 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|433593215|ref|YP_007282701.1| - 0.00024 20.5 13.0 0.0009 18.7 1.5 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|433593215|ref|YP_007282701.1| - 0.00025 20.8 10.1 0.002 17.9 7.0 2.2 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|433593215|ref|YP_007282701.1| - 0.0022 17.7 12.7 0.007 16.1 1.6 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|433593215|ref|YP_007282701.1| - 0.0049 16.7 11.6 0.078 12.9 1.8 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|433593215|ref|YP_007282701.1| - 0.013 15.7 15.1 0.093 13.1 3.0 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_20 PF14691.1 gi|433593215|ref|YP_007282701.1| - 0.039 13.5 0.1 0.039 13.5 0.1 2.6 3 0 0 3 3 3 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster DUF3050 PF11251.3 gi|433593215|ref|YP_007282701.1| - 0.14 11.3 0.0 0.28 10.3 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3050) Fer4_3 PF12798.2 gi|433593215|ref|YP_007282701.1| - 0.39 11.3 17.0 0.11 13.0 3.3 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_16 PF13484.1 gi|433593215|ref|YP_007282701.1| - 2.4 8.9 13.0 6.3 7.6 2.5 2.4 1 1 1 2 2 2 0 4Fe-4S double cluster binding domain DUF162 PF02589.10 gi|433593216|ref|YP_007282702.1| - 8.9e-23 80.7 0.0 1.1e-22 80.4 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised ACR, YkgG family COG1556 DDE_Tnp_1 PF01609.16 gi|433593217|ref|YP_007282703.1| - 1.5e-14 54.0 0.0 2.1e-14 53.5 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.6 gi|433593217|ref|YP_007282703.1| - 0.0027 17.5 0.0 0.0054 16.5 0.0 1.5 1 0 0 1 1 1 1 Transposase domain (DUF772) OrfB_IS605 PF01385.14 gi|433593218|ref|YP_007282704.1| - 1.3e-53 181.7 0.0 1.7e-53 181.3 0.0 1.1 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|433593218|ref|YP_007282704.1| - 1.2e-18 66.5 0.9 2.3e-18 65.5 0.6 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Lipase_GDSL_2 PF13472.1 gi|433593218|ref|YP_007282704.1| - 0.0021 18.1 0.4 0.0053 16.9 0.1 1.8 2 0 0 2 2 2 1 GDSL-like Lipase/Acylhydrolase family mRNA_stabil PF13929.1 gi|433593218|ref|YP_007282704.1| - 0.15 10.9 0.1 1.5 7.6 0.0 2.0 2 0 0 2 2 2 0 mRNA stabilisation DUF3784 PF12650.2 gi|433593220|ref|YP_007282706.1| - 0.003 17.4 0.6 0.0034 17.2 0.4 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF3784) SNF PF00209.13 gi|433593220|ref|YP_007282706.1| - 0.0037 15.8 0.7 0.0042 15.6 0.5 1.0 1 0 0 1 1 1 1 Sodium:neurotransmitter symporter family DUF2079 PF09852.4 gi|433593220|ref|YP_007282706.1| - 0.026 13.2 1.4 0.027 13.2 1.0 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2079) DUF2178 PF09946.4 gi|433593220|ref|YP_007282706.1| - 0.13 12.0 1.3 0.15 11.7 0.9 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2178) DUF2648 PF10855.3 gi|433593220|ref|YP_007282706.1| - 0.39 10.1 2.9 2.9 7.3 0.2 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2648) DUF2250 PF10007.4 gi|433593222|ref|YP_007282708.1| - 1.9e-05 24.4 0.0 0.00011 22.0 0.0 1.8 1 1 1 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2250) MarR_2 PF12802.2 gi|433593222|ref|YP_007282708.1| - 0.0017 17.9 0.0 0.002 17.7 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|433593222|ref|YP_007282708.1| - 0.0069 16.6 0.0 0.01 16.1 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain Mrr_N PF14338.1 gi|433593222|ref|YP_007282708.1| - 0.0072 16.3 0.0 0.0099 15.9 0.0 1.3 1 1 0 1 1 1 1 Mrr N-terminal domain HTH_24 PF13412.1 gi|433593222|ref|YP_007282708.1| - 0.019 14.3 0.0 0.22 10.9 0.0 2.0 1 1 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|433593222|ref|YP_007282708.1| - 0.073 12.6 0.1 0.096 12.2 0.0 1.2 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain DUF2161 PF09929.4 gi|433593222|ref|YP_007282708.1| - 0.082 12.8 0.0 0.12 12.2 0.0 1.3 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2161) DUF4423 PF14394.1 gi|433593222|ref|YP_007282708.1| - 0.13 11.7 0.0 0.17 11.4 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) TrmB PF01978.14 gi|433593224|ref|YP_007282710.1| - 3.6e-10 39.4 0.2 1.3e-09 37.6 0.0 1.8 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|433593224|ref|YP_007282710.1| - 9.6e-07 28.5 0.1 3e-06 26.9 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|433593224|ref|YP_007282710.1| - 8.9e-06 24.9 0.0 0.00013 21.2 0.0 2.4 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|433593224|ref|YP_007282710.1| - 3.2e-05 23.5 0.0 7.8e-05 22.2 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family F-112 PF09645.5 gi|433593224|ref|YP_007282710.1| - 0.00056 19.7 0.0 0.77 9.6 0.0 2.2 2 0 0 2 2 2 2 F-112 protein HTH_IclR PF09339.5 gi|433593224|ref|YP_007282710.1| - 0.00085 18.8 0.7 0.011 15.2 0.0 2.5 2 0 0 2 2 2 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|433593224|ref|YP_007282710.1| - 0.0017 18.0 0.5 0.012 15.2 0.0 2.2 2 0 0 2 2 2 1 MarR family RP-C PF03428.8 gi|433593224|ref|YP_007282710.1| - 0.008 15.6 0.0 0.015 14.7 0.0 1.4 1 0 0 1 1 1 1 Replication protein C N-terminal domain Penicillinase_R PF03965.11 gi|433593224|ref|YP_007282710.1| - 0.012 15.6 0.0 0.023 14.8 0.0 1.4 1 0 0 1 1 1 0 Penicillinase repressor HTH_29 PF13551.1 gi|433593224|ref|YP_007282710.1| - 0.064 13.4 0.1 0.15 12.2 0.0 1.7 2 0 0 2 2 2 0 Winged helix-turn helix PadR PF03551.9 gi|433593224|ref|YP_007282710.1| - 0.093 12.5 0.0 0.33 10.7 0.0 2.0 1 1 1 2 2 2 0 Transcriptional regulator PadR-like family FeoC PF09012.5 gi|433593224|ref|YP_007282710.1| - 0.13 12.0 0.0 2.1 8.1 0.0 2.2 2 0 0 2 2 2 0 FeoC like transcriptional regulator NB-ARC PF00931.17 gi|433593225|ref|YP_007282711.1| - 0.16 10.7 0.0 5 5.8 0.0 2.3 2 0 0 2 2 2 0 NB-ARC domain DUF4487 PF14868.1 gi|433593225|ref|YP_007282711.1| - 0.17 10.5 0.0 1.1 7.9 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4487) AAA_16 PF13191.1 gi|433593225|ref|YP_007282711.1| - 2 8.3 15.7 0.29 11.0 2.2 5.1 2 2 1 3 3 3 0 AAA ATPase domain MarR_2 PF12802.2 gi|433593226|ref|YP_007282712.1| - 0.11 12.1 0.0 0.18 11.5 0.0 1.3 1 0 0 1 1 1 0 MarR family SWIM PF04434.12 gi|433593229|ref|YP_007282715.1| - 0.0037 16.7 0.3 0.0093 15.4 0.2 1.6 1 1 0 1 1 1 1 SWIM zinc finger SprT-like PF10263.4 gi|433593229|ref|YP_007282715.1| - 1.3 8.6 3.8 2.3 7.8 2.6 1.7 1 1 0 1 1 1 0 SprT-like family KAP_NTPase PF07693.9 gi|433593230|ref|YP_007282716.1| - 1.2e-24 86.9 0.2 1.1e-23 83.7 0.1 2.5 1 1 0 1 1 1 1 KAP family P-loop domain AAA_16 PF13191.1 gi|433593230|ref|YP_007282716.1| - 1.6e-05 24.9 7.5 0.00049 20.1 0.1 5.1 4 2 0 4 4 4 1 AAA ATPase domain ABC_tran PF00005.22 gi|433593230|ref|YP_007282716.1| - 0.00014 22.1 1.4 0.075 13.3 0.0 3.7 4 0 0 4 4 4 1 ABC transporter AAA_22 PF13401.1 gi|433593230|ref|YP_007282716.1| - 0.00039 20.5 0.2 0.14 12.3 0.0 3.7 3 0 0 3 3 3 1 AAA domain AAA_18 PF13238.1 gi|433593230|ref|YP_007282716.1| - 0.023 15.0 3.1 1.1 9.5 0.0 4.3 5 0 0 5 5 5 0 AAA domain AAA_17 PF13207.1 gi|433593230|ref|YP_007282716.1| - 0.24 12.2 0.1 0.24 12.2 0.0 4.0 3 2 0 4 4 4 0 AAA domain DUF87 PF01935.12 gi|433593230|ref|YP_007282716.1| - 0.8 9.4 10.0 36 4.0 0.0 4.8 3 2 0 4 4 4 0 Domain of unknown function DUF87 AAA_10 PF12846.2 gi|433593230|ref|YP_007282716.1| - 2.7 7.3 0.0 2.7 7.3 0.0 4.2 2 1 0 3 3 3 0 AAA-like domain Sigma70_r3 PF04539.11 gi|433593231|ref|YP_007282717.1| - 0.00019 21.2 0.1 0.073 12.9 0.0 2.5 2 0 0 2 2 2 2 Sigma-70 region 3 LexA_DNA_bind PF01726.11 gi|433593231|ref|YP_007282717.1| - 0.00042 19.8 0.1 0.096 12.2 0.0 2.5 2 1 0 2 2 2 2 LexA DNA binding domain GH-E PF14410.1 gi|433593231|ref|YP_007282717.1| - 0.0027 17.8 0.4 0.29 11.3 0.0 2.7 2 1 0 2 2 2 1 HNH/ENDO VII superfamily nuclease with conserved GHE residues Zn-ribbon_8 PF09723.5 gi|433593231|ref|YP_007282717.1| - 0.084 12.8 0.5 0.2 11.6 0.4 1.6 1 0 0 1 1 1 0 Zinc ribbon domain Desulfoferrod_N PF06397.7 gi|433593231|ref|YP_007282717.1| - 0.084 12.2 0.1 0.13 11.6 0.1 1.3 1 0 0 1 1 1 0 Desulfoferrodoxin, N-terminal domain PaREP1 PF05942.6 gi|433593231|ref|YP_007282717.1| - 0.13 12.1 0.0 2 8.3 0.0 2.2 1 1 1 2 2 2 0 Archaeal PaREP1/PaREP8 family tRNA_anti-codon PF01336.20 gi|433593232|ref|YP_007282718.1| - 3.6e-06 26.7 0.0 6.6e-06 25.8 0.0 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain ABC_tran_2 PF12848.2 gi|433593232|ref|YP_007282718.1| - 0.79 9.5 7.9 2.1 8.2 5.5 1.7 1 0 0 1 1 1 0 ABC transporter BEX PF04538.7 gi|433593232|ref|YP_007282718.1| - 2.6 8.3 6.7 0.59 10.3 2.1 1.8 1 1 1 2 2 2 0 Brain expressed X-linked like family PemK PF02452.12 gi|433593234|ref|YP_007282720.1| - 0.00011 22.3 0.0 0.00013 22.1 0.0 1.1 1 0 0 1 1 1 1 PemK-like protein MarR_2 PF12802.2 gi|433593235|ref|YP_007282721.1| - 1.3e-06 27.9 0.0 1.9e-06 27.4 0.0 1.2 1 0 0 1 1 1 1 MarR family DUF2250 PF10007.4 gi|433593235|ref|YP_007282721.1| - 4.9e-05 23.1 0.1 5.9e-05 22.8 0.1 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) Fe_dep_repress PF01325.14 gi|433593235|ref|YP_007282721.1| - 0.00016 21.5 0.0 0.0034 17.3 0.0 2.1 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain Rrf2 PF02082.15 gi|433593235|ref|YP_007282721.1| - 0.00037 20.5 0.1 0.00084 19.4 0.0 1.5 2 0 0 2 2 2 1 Transcriptional regulator HTH_27 PF13463.1 gi|433593235|ref|YP_007282721.1| - 0.00071 19.8 0.1 0.0012 19.0 0.1 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.14 gi|433593235|ref|YP_007282721.1| - 0.0014 18.2 0.0 0.0023 17.6 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.1 gi|433593235|ref|YP_007282721.1| - 0.0028 17.4 0.0 0.0057 16.4 0.0 1.5 1 1 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_11 PF08279.7 gi|433593235|ref|YP_007282721.1| - 0.0065 16.0 0.2 0.011 15.4 0.1 1.3 1 0 0 1 1 1 1 HTH domain UPF0240 PF06784.6 gi|433593235|ref|YP_007282721.1| - 0.0069 16.0 0.1 0.012 15.3 0.0 1.4 2 0 0 2 2 2 1 Uncharacterised protein family (UPF0240) HTH_24 PF13412.1 gi|433593235|ref|YP_007282721.1| - 0.012 14.9 0.1 0.023 14.0 0.1 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_45 PF14947.1 gi|433593235|ref|YP_007282721.1| - 0.012 15.3 0.0 0.02 14.7 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_IclR PF09339.5 gi|433593235|ref|YP_007282721.1| - 0.015 14.9 0.0 0.023 14.3 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain MarR PF01047.17 gi|433593235|ref|YP_007282721.1| - 0.015 14.9 0.0 0.027 14.1 0.0 1.4 1 0 0 1 1 1 0 MarR family HTH_36 PF13730.1 gi|433593235|ref|YP_007282721.1| - 0.017 15.2 0.0 0.024 14.7 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain TFIIE_alpha PF02002.12 gi|433593235|ref|YP_007282721.1| - 0.038 13.4 0.7 0.051 13.0 0.5 1.5 1 1 0 1 1 1 0 TFIIE alpha subunit FeoC PF09012.5 gi|433593235|ref|YP_007282721.1| - 0.048 13.3 0.0 0.08 12.6 0.0 1.3 1 0 0 1 1 1 0 FeoC like transcriptional regulator DUF1348 PF07080.6 gi|433593235|ref|YP_007282721.1| - 0.052 13.3 0.7 0.063 13.0 0.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1348) HTH_23 PF13384.1 gi|433593235|ref|YP_007282721.1| - 0.052 13.2 0.1 0.16 11.6 0.0 1.7 2 0 0 2 2 2 0 Homeodomain-like domain HTH_20 PF12840.2 gi|433593235|ref|YP_007282721.1| - 0.066 13.0 0.0 0.11 12.3 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Glyco_tranf_2_4 PF13704.1 gi|433593235|ref|YP_007282721.1| - 0.99 9.7 8.4 0.4 11.0 1.1 2.8 1 1 1 2 2 2 0 Glycosyl transferase family 2 PadR PF03551.9 gi|433593236|ref|YP_007282722.1| - 2e-16 59.5 0.9 2.6e-16 59.1 0.6 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_27 PF13463.1 gi|433593236|ref|YP_007282722.1| - 0.00055 20.1 0.0 0.0007 19.8 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_45 PF14947.1 gi|433593236|ref|YP_007282722.1| - 0.00098 18.8 0.1 0.0014 18.4 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DUF1495 PF07381.6 gi|433593236|ref|YP_007282722.1| - 0.084 12.5 0.1 0.11 12.1 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) MarR_2 PF12802.2 gi|433593236|ref|YP_007282722.1| - 0.14 11.8 0.9 1.6 8.4 0.1 2.3 2 1 0 2 2 2 0 MarR family DUF4364 PF14277.1 gi|433593236|ref|YP_007282722.1| - 0.15 11.6 0.0 0.19 11.3 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) UPF0175 PF03683.8 gi|433593237|ref|YP_007282723.1| - 2.2e-11 43.0 0.0 2.5e-11 42.8 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0175) Plasmid_stabil PF05016.9 gi|433593238|ref|YP_007282724.1| - 0.0015 18.9 0.0 0.0022 18.3 0.0 1.3 1 0 0 1 1 1 1 Plasmid stabilisation system protein RE_AccI PF09545.5 gi|433593238|ref|YP_007282724.1| - 0.0074 14.8 0.0 0.0088 14.6 0.0 1.0 1 0 0 1 1 1 1 AccI restriction endonuclease RHH_1 PF01402.16 gi|433593239|ref|YP_007282725.1| - 2e-06 27.4 0.1 3.7e-06 26.6 0.0 1.4 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family FlgN PF05130.7 gi|433593240|ref|YP_007282726.1| - 0.00054 20.2 1.5 0.0026 18.0 1.5 1.8 2 0 0 2 2 1 1 FlgN protein ATG16 PF08614.6 gi|433593240|ref|YP_007282726.1| - 0.0024 17.7 5.1 0.0024 17.7 3.5 1.6 2 0 0 2 2 2 1 Autophagy protein 16 (ATG16) DUF3972 PF13118.1 gi|433593240|ref|YP_007282726.1| - 0.011 15.8 1.5 0.029 14.4 1.0 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF3972) Taxilin PF09728.4 gi|433593240|ref|YP_007282726.1| - 0.014 14.4 1.4 0.025 13.7 1.0 1.3 1 0 0 1 1 1 0 Myosin-like coiled-coil protein SlyX PF04102.7 gi|433593240|ref|YP_007282726.1| - 0.017 15.5 3.3 0.07 13.5 1.6 2.5 3 0 0 3 3 2 0 SlyX Atg14 PF10186.4 gi|433593240|ref|YP_007282726.1| - 0.03 13.2 1.4 0.044 12.7 0.9 1.2 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 HrpA_pilin PF09589.5 gi|433593240|ref|YP_007282726.1| - 0.051 13.9 0.0 0.11 12.9 0.0 1.6 1 1 0 1 1 1 0 HrpA pilus formation protein Med9 PF07544.8 gi|433593240|ref|YP_007282726.1| - 0.059 13.1 1.5 0.11 12.2 1.0 1.5 1 0 0 1 1 1 0 RNA polymerase II transcription mediator complex subunit 9 IncA PF04156.9 gi|433593240|ref|YP_007282726.1| - 0.08 12.5 1.7 0.14 11.7 1.2 1.4 1 0 0 1 1 1 0 IncA protein Prefoldin_2 PF01920.15 gi|433593240|ref|YP_007282726.1| - 0.14 11.9 2.7 0.3 10.8 1.9 1.5 1 0 0 1 1 1 0 Prefoldin subunit DUF972 PF06156.8 gi|433593240|ref|YP_007282726.1| - 0.14 12.4 1.3 0.32 11.3 0.9 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF972) XhlA PF10779.4 gi|433593240|ref|YP_007282726.1| - 0.22 11.4 3.9 0.49 10.3 2.7 1.6 1 0 0 1 1 1 0 Haemolysin XhlA V_ATPase_I PF01496.14 gi|433593240|ref|YP_007282726.1| - 0.26 9.1 1.4 0.35 8.6 1.0 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family DUF904 PF06005.7 gi|433593240|ref|YP_007282726.1| - 0.61 10.4 4.3 1.4 9.2 3.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF904) Rep_4 PF05797.6 gi|433593240|ref|YP_007282726.1| - 0.8 8.3 2.9 1.5 7.4 2.0 1.4 1 0 0 1 1 1 0 Yeast trans-acting factor (REP1/REP2) AAA_10 PF12846.2 gi|433593242|ref|YP_007282728.1| - 3.1e-20 72.8 0.3 5.5e-20 72.0 0.2 1.3 1 0 0 1 1 1 1 AAA-like domain TrwB_AAD_bind PF10412.4 gi|433593242|ref|YP_007282728.1| - 9.2e-07 27.8 0.0 0.0083 14.7 0.0 2.2 2 0 0 2 2 2 2 Type IV secretion-system coupling protein DNA-binding domain TraG-D_C PF12696.2 gi|433593242|ref|YP_007282728.1| - 1.1e-06 28.5 0.0 2.5e-06 27.3 0.0 1.6 1 0 0 1 1 1 1 TraM recognition site of TraD and TraG T4SS-DNA_transf PF02534.9 gi|433593242|ref|YP_007282728.1| - 0.00016 20.3 0.1 0.00057 18.5 0.1 1.7 2 0 0 2 2 2 1 Type IV secretory system Conjugative DNA transfer FtsK_SpoIIIE PF01580.13 gi|433593242|ref|YP_007282728.1| - 0.00082 18.8 0.3 0.022 14.2 0.0 2.9 3 0 0 3 3 3 1 FtsK/SpoIIIE family DUF87 PF01935.12 gi|433593242|ref|YP_007282728.1| - 0.083 12.6 0.2 0.9 9.3 0.0 2.4 2 1 0 2 2 2 0 Domain of unknown function DUF87 NACHT PF05729.7 gi|433593242|ref|YP_007282728.1| - 0.14 11.8 0.0 0.4 10.3 0.0 1.8 2 0 0 2 2 2 0 NACHT domain Rsa3 PF14615.1 gi|433593243|ref|YP_007282729.1| - 0.013 14.7 0.1 0.033 13.4 0.0 1.7 2 0 0 2 2 2 0 Ribosome-assembly protein 3 DUF3275 PF11679.3 gi|433593243|ref|YP_007282729.1| - 0.016 14.8 0.4 0.028 14.0 0.3 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3275) AAA_10 PF12846.2 gi|433593244|ref|YP_007282730.1| - 4.7e-39 134.6 0.2 4.7e-39 134.6 0.1 2.2 3 0 0 3 3 3 1 AAA-like domain AAA_22 PF13401.1 gi|433593244|ref|YP_007282730.1| - 0.00024 21.2 0.6 0.29 11.2 0.3 3.2 2 1 0 2 2 2 2 AAA domain Zot PF05707.7 gi|433593244|ref|YP_007282730.1| - 0.0004 19.9 0.1 0.023 14.1 0.0 2.4 2 0 0 2 2 2 1 Zonular occludens toxin (Zot) TraG-D_C PF12696.2 gi|433593244|ref|YP_007282730.1| - 0.00049 19.9 0.0 0.0017 18.2 0.0 1.9 2 0 0 2 2 2 1 TraM recognition site of TraD and TraG Mfa2 PF08842.5 gi|433593246|ref|YP_007282732.1| - 0.033 13.5 0.0 0.065 12.5 0.0 1.4 1 0 0 1 1 1 0 Fimbrillin-A associated anchor proteins Mfa1 and Mfa2 T2SL PF05134.8 gi|433593247|ref|YP_007282733.1| - 0.029 13.5 0.0 0.067 12.3 0.0 1.5 1 0 0 1 1 1 0 Type II secretion system (T2SS), protein L Phage_int_SAM_1 PF02899.12 gi|433593249|ref|YP_007282735.1| - 1.7e-06 28.0 0.2 0.00034 20.7 0.1 3.5 2 1 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.1 gi|433593249|ref|YP_007282735.1| - 0.015 15.5 0.0 0.027 14.7 0.0 1.4 1 0 0 1 1 1 0 Phage integrase, N-terminal SAM-like domain Phage_integrase PF00589.17 gi|433593249|ref|YP_007282735.1| - 0.1 12.2 0.0 0.44 10.1 0.0 2.2 2 1 0 2 2 2 0 Phage integrase family SPDY PF03771.11 gi|433593250|ref|YP_007282736.1| - 0.031 13.7 0.6 0.074 12.5 0.4 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF317) 2OG-FeII_Oxy_4 PF13661.1 gi|433593250|ref|YP_007282736.1| - 0.15 11.6 2.7 0.2 11.3 1.1 1.7 1 1 1 2 2 2 0 2OG-Fe(II) oxygenase superfamily Mnd1 PF03962.10 gi|433593251|ref|YP_007282737.1| - 0.00077 19.1 0.0 0.0013 18.3 0.0 1.4 1 0 0 1 1 1 1 Mnd1 family Penicillinase_R PF03965.11 gi|433593251|ref|YP_007282737.1| - 0.0023 17.9 0.0 0.004 17.2 0.0 1.7 1 1 0 1 1 1 1 Penicillinase repressor EAP30 PF04157.11 gi|433593251|ref|YP_007282737.1| - 0.0028 16.8 0.2 0.36 9.9 0.0 2.1 2 0 0 2 2 2 2 EAP30/Vps36 family HTH_24 PF13412.1 gi|433593251|ref|YP_007282737.1| - 0.0029 16.9 0.0 0.0077 15.6 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding GPP34 PF05719.6 gi|433593251|ref|YP_007282737.1| - 0.0036 17.3 1.6 0.007 16.4 0.8 1.5 1 1 0 1 1 1 1 Golgi phosphoprotein 3 (GPP34) GntR PF00392.16 gi|433593251|ref|YP_007282737.1| - 0.0057 16.0 0.0 0.014 14.8 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family TBPIP PF07106.8 gi|433593251|ref|YP_007282737.1| - 0.016 14.7 0.0 0.022 14.3 0.0 1.1 1 0 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) TrmB PF01978.14 gi|433593251|ref|YP_007282737.1| - 0.017 14.7 0.0 0.035 13.8 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HR1 PF02185.11 gi|433593251|ref|YP_007282737.1| - 0.11 12.2 0.0 0.25 11.1 0.0 1.5 1 0 0 1 1 1 0 Hr1 repeat PspB PF06667.7 gi|433593251|ref|YP_007282737.1| - 0.37 10.7 4.2 7.1 6.6 0.2 2.9 3 0 0 3 3 3 0 Phage shock protein B DDE_Tnp_1 PF01609.16 gi|433593253|ref|YP_007282739.1| - 1e-06 28.4 0.0 1.7e-06 27.7 0.0 1.3 1 0 0 1 1 1 1 Transposase DDE domain Na_K-ATPase PF00287.13 gi|433593253|ref|YP_007282739.1| - 0.11 11.3 0.1 0.25 10.0 0.1 1.5 1 0 0 1 1 1 0 Sodium / potassium ATPase beta chain SymE_toxin PF08845.5 gi|433593254|ref|YP_007282740.1| - 0.0011 18.8 0.0 0.0012 18.6 0.0 1.1 1 0 0 1 1 1 1 Toxin SymE, type I toxin-antitoxin system Antitoxin-MazE PF04014.13 gi|433593254|ref|YP_007282740.1| - 0.012 15.3 0.1 0.016 14.9 0.0 1.2 1 0 0 1 1 1 0 Antidote-toxin recognition MazE AA_permease_2 PF13520.1 gi|433593256|ref|YP_007282742.1| - 5.6e-56 189.8 47.7 6.9e-56 189.5 33.0 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|433593256|ref|YP_007282742.1| - 8.2e-47 159.6 43.8 1e-46 159.3 30.4 1.1 1 0 0 1 1 1 1 Amino acid permease Spore_permease PF03845.8 gi|433593256|ref|YP_007282742.1| - 3.4e-06 25.9 8.6 8.2e-06 24.6 6.0 1.6 1 0 0 1 1 1 1 Spore germination protein AA_permease_C PF13906.1 gi|433593256|ref|YP_007282742.1| - 5.4e-05 22.9 6.7 5.4e-05 22.9 4.7 3.6 5 0 0 5 5 5 1 C-terminus of AA_permease TrkA_N PF02254.13 gi|433593257|ref|YP_007282743.1| - 2.7e-23 82.1 0.3 4.6e-23 81.4 0.2 1.4 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.16 gi|433593257|ref|YP_007282743.1| - 8.7e-06 25.2 0.5 5.2e-05 22.7 0.0 2.4 2 1 0 2 2 2 1 TrkA-C domain UDPG_MGDP_dh_N PF03721.9 gi|433593257|ref|YP_007282743.1| - 1.7e-05 24.3 0.1 5.2e-05 22.7 0.0 1.8 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Pyr_redox_2 PF07992.9 gi|433593257|ref|YP_007282743.1| - 4.3e-05 23.4 0.1 5.1e-05 23.2 0.1 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_7 PF13241.1 gi|433593257|ref|YP_007282743.1| - 0.00088 19.4 0.1 0.0015 18.7 0.0 1.4 1 1 0 1 1 1 1 Putative NAD(P)-binding FAD_binding_3 PF01494.14 gi|433593257|ref|YP_007282743.1| - 0.006 15.6 0.0 0.0078 15.2 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain DAO PF01266.19 gi|433593257|ref|YP_007282743.1| - 0.0064 15.4 0.1 0.012 14.5 0.0 1.3 1 1 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox PF00070.22 gi|433593257|ref|YP_007282743.1| - 0.01 16.2 0.0 0.023 15.0 0.0 1.7 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase B12-binding PF02310.14 gi|433593257|ref|YP_007282743.1| - 0.02 14.7 1.1 0.14 12.0 0.1 2.5 1 1 1 2 2 2 0 B12 binding domain NAD_binding_8 PF13450.1 gi|433593257|ref|YP_007282743.1| - 0.035 14.1 0.0 0.19 11.7 0.0 2.2 3 0 0 3 3 3 0 NAD(P)-binding Rossmann-like domain Glyco_transf_4 PF13439.1 gi|433593257|ref|YP_007282743.1| - 0.061 13.0 0.1 0.26 10.9 0.0 1.9 1 1 1 2 2 2 0 Glycosyltransferase Family 4 Zip PF02535.17 gi|433593258|ref|YP_007282744.1| - 4.3e-21 75.2 19.4 1.4e-19 70.2 4.3 2.5 2 1 0 2 2 2 2 ZIP Zinc transporter Aconitase PF00330.15 gi|433593259|ref|YP_007282745.1| - 6.8e-139 463.3 0.0 8.3e-139 463.0 0.0 1.1 1 0 0 1 1 1 1 Aconitase family (aconitate hydratase) Aconitase_C PF00694.14 gi|433593259|ref|YP_007282745.1| - 6.3e-41 139.5 0.0 1.2e-40 138.6 0.0 1.5 1 0 0 1 1 1 1 Aconitase C-terminal domain Usp PF00582.21 gi|433593261|ref|YP_007282747.1| - 1.9e-21 76.7 1.9 2.6e-21 76.3 1.3 1.2 1 0 0 1 1 1 1 Universal stress protein family Na_Ca_ex PF01699.19 gi|433593262|ref|YP_007282748.1| - 1.7e-22 79.5 24.0 2e-12 46.8 4.3 2.1 2 0 0 2 2 2 2 Sodium/calcium exchanger protein Foie-gras_1 PF11817.3 gi|433593263|ref|YP_007282749.1| - 0.0065 15.9 0.2 0.0088 15.5 0.1 1.1 1 0 0 1 1 1 1 Foie gras liver health family 1 AAA_23 PF13476.1 gi|433593264|ref|YP_007282750.1| - 5e-09 36.7 29.5 0.035 14.4 20.4 4.0 1 1 0 1 1 1 1 AAA domain AAA_13 PF13166.1 gi|433593264|ref|YP_007282750.1| - 2.1e-08 33.1 28.4 6.9e-07 28.1 8.2 2.6 1 1 2 3 3 3 3 AAA domain Reo_sigmaC PF04582.7 gi|433593264|ref|YP_007282750.1| - 7.8e-07 28.5 15.1 0.00024 20.4 3.0 3.3 2 1 2 4 4 3 2 Reovirus sigma C capsid protein TBPIP PF07106.8 gi|433593264|ref|YP_007282750.1| - 3.7e-06 26.5 37.8 0.0045 16.5 1.8 5.9 2 2 4 6 6 6 2 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) CENP-F_leu_zip PF10473.4 gi|433593264|ref|YP_007282750.1| - 1.5e-05 24.8 57.3 0.0077 16.1 7.0 5.1 1 1 4 5 5 5 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Spc7 PF08317.6 gi|433593264|ref|YP_007282750.1| - 2.4e-05 23.1 42.5 0.0014 17.3 9.8 3.9 1 1 3 4 4 4 2 Spc7 kinetochore protein IncA PF04156.9 gi|433593264|ref|YP_007282750.1| - 2.5e-05 23.9 63.9 0.0013 18.3 10.6 4.4 1 1 2 3 3 2 2 IncA protein GAS PF13851.1 gi|433593264|ref|YP_007282750.1| - 0.00012 21.3 40.1 0.7 9.0 3.9 4.1 2 2 1 3 3 3 3 Growth-arrest specific micro-tubule binding FliJ PF02050.11 gi|433593264|ref|YP_007282750.1| - 0.00022 21.2 27.9 0.0026 17.8 2.6 5.8 3 2 3 6 6 5 2 Flagellar FliJ protein Atg14 PF10186.4 gi|433593264|ref|YP_007282750.1| - 0.00032 19.7 35.2 0.017 14.1 10.2 3.2 1 1 1 2 2 2 2 UV radiation resistance protein and autophagy-related subunit 14 Prefoldin_2 PF01920.15 gi|433593264|ref|YP_007282750.1| - 0.00041 20.0 46.9 1 9.1 0.8 7.5 3 2 1 5 5 5 1 Prefoldin subunit Tropomyosin_1 PF12718.2 gi|433593264|ref|YP_007282750.1| - 0.00067 19.5 61.5 0.029 14.2 4.2 4.5 2 2 2 4 4 4 3 Tropomyosin like Baculo_PEP_C PF04513.7 gi|433593264|ref|YP_007282750.1| - 0.00079 19.2 19.6 0.17 11.7 2.9 5.0 3 2 2 5 5 4 2 Baculovirus polyhedron envelope protein, PEP, C terminus ATG16 PF08614.6 gi|433593264|ref|YP_007282750.1| - 0.001 18.9 52.2 0.01 15.6 11.1 4.7 2 2 3 5 5 5 2 Autophagy protein 16 (ATG16) DUF3584 PF12128.3 gi|433593264|ref|YP_007282750.1| - 0.0029 15.0 49.5 0.31 8.3 14.8 3.4 1 1 1 3 3 3 2 Protein of unknown function (DUF3584) TPR_MLP1_2 PF07926.7 gi|433593264|ref|YP_007282750.1| - 0.0035 17.0 42.3 1.3 8.7 2.3 4.8 1 1 2 3 3 3 1 TPR/MLP1/MLP2-like protein Seryl_tRNA_N PF02403.17 gi|433593264|ref|YP_007282750.1| - 0.0039 17.1 9.2 0.0039 17.1 6.4 4.9 3 2 3 6 6 5 1 Seryl-tRNA synthetase N-terminal domain TMF_DNA_bd PF12329.3 gi|433593264|ref|YP_007282750.1| - 0.0044 16.8 6.5 0.0044 16.8 4.5 7.1 4 2 2 6 6 4 2 TATA element modulatory factor 1 DNA binding Prefoldin PF02996.12 gi|433593264|ref|YP_007282750.1| - 0.0048 16.5 38.8 0.58 9.8 0.9 7.2 2 2 6 8 8 8 4 Prefoldin subunit NPV_P10 PF05531.7 gi|433593264|ref|YP_007282750.1| - 0.0068 16.6 19.5 0.47 10.7 0.5 6.3 3 2 3 6 6 6 1 Nucleopolyhedrovirus P10 protein BLOC1_2 PF10046.4 gi|433593264|ref|YP_007282750.1| - 0.0071 16.4 28.5 0.38 10.9 1.4 5.7 2 2 4 6 6 6 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 TMF_TATA_bd PF12325.3 gi|433593264|ref|YP_007282750.1| - 0.011 15.3 56.2 0.16 11.6 1.6 5.4 1 1 4 5 5 5 0 TATA element modulatory factor 1 TATA binding MscS_porin PF12795.2 gi|433593264|ref|YP_007282750.1| - 0.014 14.7 48.0 0.013 14.8 12.5 3.8 2 2 0 2 2 2 0 Mechanosensitive ion channel porin domain COG2 PF06148.6 gi|433593264|ref|YP_007282750.1| - 0.014 15.2 26.6 0.035 13.9 1.2 5.5 1 1 3 5 5 5 0 COG (conserved oligomeric Golgi) complex component, COG2 Mnd1 PF03962.10 gi|433593264|ref|YP_007282750.1| - 0.026 14.1 41.8 0.25 10.9 8.1 4.6 1 1 4 5 5 5 0 Mnd1 family Laminin_II PF06009.7 gi|433593264|ref|YP_007282750.1| - 0.028 14.1 26.2 0.21 11.3 3.3 4.8 3 2 4 7 7 6 0 Laminin Domain II AAA_27 PF13514.1 gi|433593264|ref|YP_007282750.1| - 0.031 11.9 51.9 0.045 11.4 15.2 2.4 1 1 0 2 2 2 0 AAA domain APG6 PF04111.7 gi|433593264|ref|YP_007282750.1| - 0.033 13.2 52.7 0.032 13.2 9.5 4.1 1 1 2 4 4 4 0 Autophagy protein Apg6 AAA_21 PF13304.1 gi|433593264|ref|YP_007282750.1| - 0.048 13.6 0.1 0.13 12.1 0.0 1.8 1 0 0 1 1 1 0 AAA domain DUF342 PF03961.8 gi|433593264|ref|YP_007282750.1| - 0.11 10.9 32.1 1.3 7.3 1.3 4.1 1 1 2 4 4 4 0 Protein of unknown function (DUF342) Fib_alpha PF08702.5 gi|433593264|ref|YP_007282750.1| - 0.17 12.0 19.8 0.34 11.0 2.3 4.2 1 1 2 4 4 4 0 Fibrinogen alpha/beta chain family Spc24 PF08286.6 gi|433593264|ref|YP_007282750.1| - 0.18 11.5 46.7 1.1 8.9 1.9 7.4 2 2 5 7 7 7 0 Spc24 subunit of Ndc80 Cortex-I_coil PF09304.5 gi|433593264|ref|YP_007282750.1| - 0.2 11.7 47.9 1.1 9.2 4.9 5.3 1 1 4 6 6 6 0 Cortexillin I, coiled coil HsbA PF12296.3 gi|433593264|ref|YP_007282750.1| - 0.24 11.2 1.8 1.8 8.4 0.0 3.2 3 1 0 3 3 2 0 Hydrophobic surface binding protein A DUF2353 PF09789.4 gi|433593264|ref|YP_007282750.1| - 0.34 10.1 43.2 0.31 10.2 2.6 4.1 2 1 0 2 2 1 0 Uncharacterized coiled-coil protein (DUF2353) WEMBL PF05701.6 gi|433593264|ref|YP_007282750.1| - 0.36 9.2 48.0 0.13 10.7 9.7 3.2 1 1 3 4 4 4 0 Weak chloroplast movement under blue light FlxA PF14282.1 gi|433593264|ref|YP_007282750.1| - 0.39 10.6 24.0 1.9 8.4 1.8 5.3 2 2 3 5 5 5 0 FlxA-like protein DUF4200 PF13863.1 gi|433593264|ref|YP_007282750.1| - 0.42 10.5 51.9 0.44 10.5 6.1 6.2 3 3 3 6 6 6 0 Domain of unknown function (DUF4200) Filament PF00038.16 gi|433593264|ref|YP_007282750.1| - 0.57 9.6 51.0 4.9 6.5 23.2 4.0 1 1 0 3 3 3 0 Intermediate filament protein DivIC PF04977.10 gi|433593264|ref|YP_007282750.1| - 0.64 9.5 54.1 0.38 10.2 1.2 8.1 4 2 4 8 8 8 0 Septum formation initiator ERM PF00769.14 gi|433593264|ref|YP_007282750.1| - 0.68 9.4 49.0 0.21 11.0 15.9 3.3 2 2 0 2 2 2 0 Ezrin/radixin/moesin family PilJ PF13675.1 gi|433593264|ref|YP_007282750.1| - 0.91 9.8 30.8 30 4.9 3.8 5.7 1 1 3 4 4 4 0 Type IV pili methyl-accepting chemotaxis transducer N-term Phage_GP20 PF06810.6 gi|433593264|ref|YP_007282750.1| - 1 8.7 40.1 0.28 10.6 0.7 5.4 2 2 3 5 5 5 0 Phage minor structural protein GP20 DUF972 PF06156.8 gi|433593264|ref|YP_007282750.1| - 1.2 9.5 29.2 3.5 8.0 0.9 5.3 2 2 2 4 4 4 0 Protein of unknown function (DUF972) DUF812 PF05667.6 gi|433593264|ref|YP_007282750.1| - 1.4 7.3 39.5 0.032 12.7 11.8 2.8 1 1 1 3 3 3 0 Protein of unknown function (DUF812) Myosin_tail_1 PF01576.14 gi|433593264|ref|YP_007282750.1| - 1.5 6.4 66.7 6.1 4.4 18.9 2.5 1 1 1 2 2 2 0 Myosin tail FlaC_arch PF05377.6 gi|433593264|ref|YP_007282750.1| - 2.5 8.0 37.6 4.2 7.3 0.3 8.4 6 3 3 9 9 9 0 Flagella accessory protein C (FlaC) DUF745 PF05335.8 gi|433593264|ref|YP_007282750.1| - 2.6 7.5 12.5 0.39 10.2 1.3 3.6 2 2 1 4 4 4 0 Protein of unknown function (DUF745) Syntaxin-6_N PF09177.6 gi|433593264|ref|YP_007282750.1| - 2.7 8.4 38.7 0.78 10.1 2.3 5.7 2 2 3 5 5 5 0 Syntaxin 6, N-terminal ApoO PF09769.4 gi|433593264|ref|YP_007282750.1| - 3.2 7.4 7.8 3 7.5 0.5 3.6 2 2 1 3 3 3 0 Apolipoprotein O Nup54 PF13874.1 gi|433593264|ref|YP_007282750.1| - 5.5 6.6 25.1 0.23 11.1 4.7 4.4 2 2 2 4 4 4 0 Nucleoporin complex subunit 54 DUF2730 PF10805.3 gi|433593264|ref|YP_007282750.1| - 6.1 6.6 34.3 5 6.9 1.6 4.9 3 1 2 5 5 5 0 Protein of unknown function (DUF2730) DUF1664 PF07889.7 gi|433593264|ref|YP_007282750.1| - 7 6.4 24.1 2.1 8.1 1.7 4.8 3 2 3 6 6 6 0 Protein of unknown function (DUF1664) DegS PF05384.6 gi|433593264|ref|YP_007282750.1| - 7.7 5.7 41.5 0.39 9.9 10.3 5.3 4 2 0 4 4 3 0 Sensor protein DegS DUF948 PF06103.6 gi|433593264|ref|YP_007282750.1| - 7.8 6.4 14.0 12 5.8 0.2 4.9 2 2 2 4 4 4 0 Bacterial protein of unknown function (DUF948) DDE_Tnp_1 PF01609.16 gi|433593265|ref|YP_007282751.1| - 3e-16 59.6 1.8 1.6e-15 57.2 1.3 1.8 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_2 PF13586.1 gi|433593265|ref|YP_007282751.1| - 9.7e-05 22.4 0.0 0.00022 21.3 0.0 1.6 1 0 0 1 1 1 1 Transposase DDE domain TBP PF00352.16 gi|433593266|ref|YP_007282752.1| - 1.4e-59 197.3 0.0 1.2e-29 101.4 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.3 gi|433593266|ref|YP_007282752.1| - 0.00014 21.8 0.0 0.5 10.4 0.0 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) Iso_dh PF00180.15 gi|433593267|ref|YP_007282753.1| - 1.6e-107 359.5 0.0 1.9e-107 359.2 0.0 1.1 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase Aconitase PF00330.15 gi|433593269|ref|YP_007282755.1| - 8.3e-100 334.4 0.3 2e-69 234.3 0.0 2.1 1 1 1 2 2 2 2 Aconitase family (aconitate hydratase) Aconitase_C PF00694.14 gi|433593269|ref|YP_007282755.1| - 8.1e-21 74.4 0.0 1.5e-20 73.6 0.0 1.4 1 0 0 1 1 1 1 Aconitase C-terminal domain DUF521 PF04412.8 gi|433593269|ref|YP_007282755.1| - 0.044 12.3 0.0 0.068 11.7 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF521) Barwin PF00967.12 gi|433593269|ref|YP_007282755.1| - 0.045 13.4 0.0 0.12 12.1 0.0 1.7 1 0 0 1 1 1 0 Barwin family Hist_deacetyl PF00850.14 gi|433593271|ref|YP_007282757.1| - 1.4e-83 280.7 0.0 1.9e-83 280.3 0.0 1.1 1 0 0 1 1 1 1 Histone deacetylase domain UPF0058 PF01893.11 gi|433593272|ref|YP_007282758.1| - 4.7e-17 61.8 0.1 5.2e-17 61.6 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0058 DDE_Tnp_IS240 PF13610.1 gi|433593273|ref|YP_007282759.1| - 1.8e-14 53.9 0.0 2.3e-14 53.5 0.0 1.2 1 0 0 1 1 1 1 DDE domain DDE_Tnp_IS66 PF03050.9 gi|433593273|ref|YP_007282759.1| - 0.00086 18.6 0.5 0.007 15.6 0.4 2.3 1 1 0 1 1 1 1 Transposase IS66 family rve PF00665.21 gi|433593273|ref|YP_007282759.1| - 0.0025 17.8 0.1 0.0049 16.9 0.1 1.4 1 0 0 1 1 1 1 Integrase core domain Transposase_mut PF00872.13 gi|433593273|ref|YP_007282759.1| - 0.012 14.1 0.1 0.24 9.8 0.0 2.2 2 0 0 2 2 2 0 Transposase, Mutator family DDE_Tnp_1_2 PF13586.1 gi|433593273|ref|YP_007282759.1| - 0.064 13.4 0.1 0.13 12.5 0.1 1.7 1 0 0 1 1 1 0 Transposase DDE domain AAA_22 PF13401.1 gi|433593273|ref|YP_007282759.1| - 0.082 13.0 0.2 0.19 11.8 0.1 1.6 1 1 0 1 1 1 0 AAA domain TMEM71 PF15121.1 gi|433593273|ref|YP_007282759.1| - 0.09 12.5 0.1 0.18 11.5 0.1 1.4 1 0 0 1 1 1 0 TMEM71 protein family DDE_Tnp_1 PF01609.16 gi|433593273|ref|YP_007282759.1| - 0.19 11.2 1.5 5.5 6.4 0.3 2.1 1 1 1 2 2 2 0 Transposase DDE domain Zip PF02535.17 gi|433593274|ref|YP_007282760.1| - 8.8e-23 80.7 10.2 5.5e-18 65.0 3.6 2.0 1 1 1 2 2 2 2 ZIP Zinc transporter YhhN PF07947.9 gi|433593274|ref|YP_007282760.1| - 0.1 11.9 0.2 0.1 11.9 0.2 2.5 3 1 0 3 3 3 0 YhhN-like protein GtrA PF04138.9 gi|433593274|ref|YP_007282760.1| - 0.17 11.8 0.2 0.17 11.8 0.1 2.5 2 1 0 3 3 3 0 GtrA-like protein CTV_P6 PF06706.6 gi|433593274|ref|YP_007282760.1| - 1.3 8.5 4.1 7 6.2 0.1 2.9 2 0 0 2 2 2 0 Citrus tristeza virus 6-kDa protein Form_Nir_trans PF01226.12 gi|433593275|ref|YP_007282761.1| - 3.4e-48 163.7 20.2 3.9e-48 163.5 14.0 1.0 1 0 0 1 1 1 1 Formate/nitrite transporter DUF202 PF02656.10 gi|433593276|ref|YP_007282762.1| - 2.9e-08 33.8 7.7 5.8e-08 32.8 5.4 1.5 1 1 0 1 1 1 1 Domain of unknown function (DUF202) DUF1212 PF06738.7 gi|433593276|ref|YP_007282762.1| - 0.0011 18.5 0.2 0.0012 18.3 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1212) DUF1469 PF07332.6 gi|433593276|ref|YP_007282762.1| - 0.011 15.4 0.1 0.015 15.0 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) CAAD PF14159.1 gi|433593276|ref|YP_007282762.1| - 0.015 14.9 0.1 0.018 14.6 0.0 1.1 1 0 0 1 1 1 0 CAAD domains of cyanobacterial aminoacyl-tRNA synthetase BacA PF02673.13 gi|433593276|ref|YP_007282762.1| - 0.025 13.7 0.0 0.026 13.6 0.0 1.0 1 0 0 1 1 1 0 Bacitracin resistance protein BacA DUF2721 PF11026.3 gi|433593276|ref|YP_007282762.1| - 0.078 12.6 0.4 0.087 12.4 0.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2721) ABC2_membrane_3 PF12698.2 gi|433593276|ref|YP_007282762.1| - 0.12 11.3 1.3 0.14 11.1 0.9 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein UPF0029 PF01205.14 gi|433593277|ref|YP_007282763.1| - 3.4e-32 110.3 0.0 4.8e-32 109.9 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized protein family UPF0029 DUF1949 PF09186.6 gi|433593277|ref|YP_007282763.1| - 5.6e-11 41.8 1.1 1.5e-10 40.4 0.1 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF1949) EFG_C PF00679.19 gi|433593277|ref|YP_007282763.1| - 0.012 15.4 0.0 0.022 14.6 0.0 1.4 1 0 0 1 1 1 0 Elongation factor G C-terminus PTA_PTB PF01515.14 gi|433593278|ref|YP_007282764.1| - 2e-92 309.7 0.1 2.7e-92 309.2 0.1 1.2 1 0 0 1 1 1 1 Phosphate acetyl/butaryl transferase Malic_M PF03949.10 gi|433593278|ref|YP_007282764.1| - 2.2e-67 227.3 0.1 4e-67 226.4 0.1 1.5 1 0 0 1 1 1 1 Malic enzyme, NAD binding domain malic PF00390.14 gi|433593278|ref|YP_007282764.1| - 3.2e-29 101.7 0.0 6.9e-27 94.2 0.0 2.4 1 1 0 1 1 1 1 Malic enzyme, N-terminal domain Hydrolase PF00702.21 gi|433593278|ref|YP_007282764.1| - 0.055 13.8 2.4 0.12 12.7 0.6 2.4 2 1 0 2 2 2 0 haloacid dehalogenase-like hydrolase Acyl-CoA_dh_C PF12806.2 gi|433593278|ref|YP_007282764.1| - 0.39 10.5 3.8 8.2 6.3 0.1 2.5 2 0 0 2 2 2 0 Acetyl-CoA dehydrogenase C-terminal like zinc_ribbon_5 PF13719.1 gi|433593279|ref|YP_007282765.1| - 0.0062 16.0 0.6 0.14 11.7 0.0 2.1 2 0 0 2 2 2 1 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|433593279|ref|YP_007282765.1| - 0.028 14.1 0.9 0.67 9.6 0.0 2.1 2 0 0 2 2 2 0 zinc-ribbon domain DNA_RNApol_7kD PF03604.8 gi|433593279|ref|YP_007282765.1| - 0.1 12.1 0.1 0.19 11.2 0.0 1.6 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit ILVD_EDD PF00920.16 gi|433593280|ref|YP_007282766.1| - 1.5e-205 683.5 0.3 1.7e-205 683.3 0.2 1.0 1 0 0 1 1 1 1 Dehydratase family CitMHS PF03600.11 gi|433593281|ref|YP_007282767.1| - 2.1e-36 125.2 22.7 2.1e-36 125.2 15.7 1.9 1 1 1 2 2 2 2 Citrate transporter ArsB PF02040.10 gi|433593281|ref|YP_007282767.1| - 1.3e-10 40.8 23.8 3.4e-10 39.4 16.5 1.7 1 1 0 1 1 1 1 Arsenical pump membrane protein Phage_holin_5 PF06946.6 gi|433593281|ref|YP_007282767.1| - 0.00097 19.2 1.4 0.0039 17.3 0.4 2.4 1 1 1 2 2 2 1 Phage holin CbiA PF01656.18 gi|433593283|ref|YP_007282769.1| - 5.8e-23 81.3 0.0 8.1e-23 80.8 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|433593283|ref|YP_007282769.1| - 5.3e-10 39.4 0.0 3.8e-09 36.6 0.0 2.2 1 1 0 1 1 1 1 AAA domain YhjQ PF06564.7 gi|433593283|ref|YP_007282769.1| - 1.2e-08 34.5 0.0 1.7e-08 34.1 0.0 1.2 1 0 0 1 1 1 1 YhjQ protein ArsA_ATPase PF02374.10 gi|433593283|ref|YP_007282769.1| - 1.5e-07 30.7 0.0 3.1e-07 29.7 0.0 1.5 1 0 0 1 1 1 1 Anion-transporting ATPase MipZ PF09140.6 gi|433593283|ref|YP_007282769.1| - 1e-06 28.0 0.1 0.0002 20.5 0.0 2.2 2 0 0 2 2 2 2 ATPase MipZ Fer4_NifH PF00142.13 gi|433593283|ref|YP_007282769.1| - 3.7e-05 23.0 0.0 0.0019 17.4 0.0 2.3 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family VirC1 PF07015.6 gi|433593283|ref|YP_007282769.1| - 0.0026 16.8 0.1 0.024 13.7 0.0 2.1 2 0 0 2 2 2 1 VirC1 protein AAA_25 PF13481.1 gi|433593283|ref|YP_007282769.1| - 0.0045 16.4 0.0 0.0098 15.3 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|433593283|ref|YP_007282769.1| - 0.014 16.2 0.0 0.025 15.3 0.0 1.8 1 1 0 1 1 1 0 AAA domain APS_kinase PF01583.15 gi|433593283|ref|YP_007282769.1| - 0.061 12.9 0.0 0.12 12.0 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_18 PF13238.1 gi|433593283|ref|YP_007282769.1| - 0.067 13.4 0.0 0.21 11.8 0.0 1.8 2 0 0 2 2 2 0 AAA domain ArgK PF03308.11 gi|433593283|ref|YP_007282769.1| - 0.068 11.9 0.0 0.1 11.3 0.0 1.2 1 0 0 1 1 1 0 ArgK protein Methyltransf_26 PF13659.1 gi|433593283|ref|YP_007282769.1| - 0.074 13.0 0.0 0.17 11.9 0.0 1.6 1 1 0 1 1 1 0 Methyltransferase domain AAA_10 PF12846.2 gi|433593283|ref|YP_007282769.1| - 0.099 12.0 0.0 0.12 11.8 0.0 1.4 1 1 0 1 1 1 0 AAA-like domain UvrD-helicase PF00580.16 gi|433593284|ref|YP_007282770.1| - 2.1e-61 207.9 0.0 4.8e-61 206.7 0.0 1.6 1 1 0 1 1 1 1 UvrD/REP helicase N-terminal domain UvrD_C PF13361.1 gi|433593284|ref|YP_007282770.1| - 2.4e-39 135.7 0.0 5e-39 134.7 0.0 1.5 1 1 0 1 1 1 1 UvrD-like helicase C-terminal domain PDDEXK_1 PF12705.2 gi|433593284|ref|YP_007282770.1| - 4.1e-12 46.0 0.1 2.1e-11 43.7 0.0 2.3 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily AAA_19 PF13245.1 gi|433593284|ref|YP_007282770.1| - 2.9e-11 42.9 0.1 1.2e-10 40.9 0.1 2.1 1 0 0 1 1 1 1 Part of AAA domain UvrD_C_2 PF13538.1 gi|433593284|ref|YP_007282770.1| - 2.6e-10 40.3 0.5 2.6e-05 24.2 0.0 3.1 3 0 0 3 3 3 2 UvrD-like helicase C-terminal domain AAA_30 PF13604.1 gi|433593284|ref|YP_007282770.1| - 5.9e-07 29.2 0.3 0.00019 21.0 0.0 2.6 2 0 0 2 2 2 2 AAA domain Viral_helicase1 PF01443.13 gi|433593284|ref|YP_007282770.1| - 0.00013 21.5 0.3 5.9 6.3 0.0 4.2 4 0 0 4 4 4 1 Viral (Superfamily 1) RNA helicase AAA_11 PF13086.1 gi|433593284|ref|YP_007282770.1| - 0.001 18.7 0.0 0.73 9.3 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|433593284|ref|YP_007282770.1| - 0.004 17.2 0.0 5.5 7.1 0.0 2.9 2 0 0 2 2 2 2 AAA domain DUF2800 PF10926.3 gi|433593284|ref|YP_007282770.1| - 0.0057 15.8 0.0 0.018 14.2 0.0 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF2800) DEAD PF00270.24 gi|433593284|ref|YP_007282770.1| - 0.058 12.8 0.1 0.17 11.4 0.0 1.7 2 0 0 2 2 2 0 DEAD/DEAH box helicase DUF3945 PF13101.1 gi|433593284|ref|YP_007282770.1| - 0.25 10.6 0.6 7.5 5.9 0.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3945) PDDEXK_1 PF12705.2 gi|433593285|ref|YP_007282771.1| - 7.4e-38 130.3 0.0 2.3e-36 125.4 0.0 2.3 2 0 0 2 2 2 1 PD-(D/E)XK nuclease superfamily Exonuc_V_gamma PF04257.9 gi|433593285|ref|YP_007282771.1| - 7e-09 34.2 0.0 0.00015 19.9 0.0 2.1 2 0 0 2 2 2 2 Exodeoxyribonuclease V, gamma subunit UvrD_C PF13361.1 gi|433593285|ref|YP_007282771.1| - 0.18 11.2 0.0 0.31 10.4 0.0 1.3 1 0 0 1 1 1 0 UvrD-like helicase C-terminal domain DUF3962 PF13111.1 gi|433593285|ref|YP_007282771.1| - 0.46 9.8 0.0 0.74 9.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3962) DUF1819 PF08849.6 gi|433593286|ref|YP_007282772.1| - 6e-07 29.0 0.0 9.1e-07 28.4 0.0 1.1 1 0 0 1 1 1 1 Putative inner membrane protein (DUF1819) ABC_tran PF00005.22 gi|433593287|ref|YP_007282773.1| - 0.041 14.1 0.3 0.45 10.7 0.0 2.9 3 0 0 3 3 3 0 ABC transporter KAP_NTPase PF07693.9 gi|433593287|ref|YP_007282773.1| - 0.11 11.5 0.0 0.24 10.3 0.0 1.5 1 0 0 1 1 1 0 KAP family P-loop domain DUF1515 PF07439.6 gi|433593287|ref|YP_007282773.1| - 0.13 12.1 5.6 0.12 12.1 0.4 3.1 3 0 0 3 3 3 0 Protein of unknown function (DUF1515) Syntaxin PF00804.20 gi|433593287|ref|YP_007282773.1| - 0.4 10.8 3.1 19 5.4 0.0 3.7 3 0 0 3 3 3 0 Syntaxin DUF1788 PF08747.6 gi|433593288|ref|YP_007282774.1| - 3.3e-11 43.1 0.0 4.7e-11 42.6 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1788) Bac_DnaA PF00308.13 gi|433593289|ref|YP_007282775.1| - 0.019 14.6 0.0 0.05 13.2 0.0 1.7 1 0 0 1 1 1 0 Bacterial dnaA protein Methyltransf_26 PF13659.1 gi|433593291|ref|YP_007282777.1| - 6.8e-21 74.4 0.1 2.8e-20 72.4 0.0 2.0 1 1 0 1 1 1 1 Methyltransferase domain N6_Mtase PF02384.11 gi|433593291|ref|YP_007282777.1| - 8.2e-11 41.5 0.0 1.8e-06 27.2 0.0 3.4 3 0 0 3 3 3 2 N-6 DNA Methylase Methyltransf_31 PF13847.1 gi|433593291|ref|YP_007282777.1| - 2.8e-05 23.7 0.0 8.5e-05 22.1 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Eco57I PF07669.6 gi|433593291|ref|YP_007282777.1| - 0.00053 20.3 0.0 0.0012 19.1 0.0 1.6 1 0 0 1 1 1 1 Eco57I restriction-modification methylase UPF0020 PF01170.13 gi|433593291|ref|YP_007282777.1| - 0.00063 19.3 0.0 0.024 14.2 0.0 2.4 2 0 0 2 2 2 1 Putative RNA methylase family UPF0020 HBS1_N PF08938.5 gi|433593291|ref|YP_007282777.1| - 0.2 11.7 5.6 0.68 10.0 3.4 2.3 1 1 0 1 1 1 0 HBS1 N-terminus UPF0184 PF03670.8 gi|433593292|ref|YP_007282778.1| - 2.4 8.3 6.6 14 5.9 0.0 3.8 4 0 0 4 4 4 0 Uncharacterised protein family (UPF0184) PglZ PF08665.7 gi|433593294|ref|YP_007282780.1| - 2.5e-11 43.5 0.0 4.7e-11 42.6 0.0 1.5 1 0 0 1 1 1 1 PglZ domain MA3 PF02847.12 gi|433593294|ref|YP_007282780.1| - 0.17 11.6 0.0 30 4.3 0.0 2.9 3 0 0 3 3 3 0 MA3 domain DUF2857 PF11198.3 gi|433593294|ref|YP_007282780.1| - 0.18 11.2 0.3 0.37 10.2 0.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2857) SNF2_N PF00176.18 gi|433593295|ref|YP_007282781.1| - 1.5e-25 89.6 0.0 2e-23 82.6 0.0 2.3 1 1 0 1 1 1 1 SNF2 family N-terminal domain Helicase_C PF00271.26 gi|433593295|ref|YP_007282781.1| - 7e-19 67.4 0.0 2.4e-18 65.7 0.0 2.0 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|433593295|ref|YP_007282781.1| - 5.4e-10 39.3 0.2 2.9e-09 36.9 0.0 2.4 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit DEAD PF00270.24 gi|433593295|ref|YP_007282781.1| - 2e-06 27.4 0.0 8.4e-06 25.3 0.0 2.1 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C_4 PF13871.1 gi|433593295|ref|YP_007282781.1| - 7e-05 22.3 5.0 0.00024 20.6 0.0 2.8 3 0 0 3 3 3 1 Helicase_C-like DUF4611 PF15387.1 gi|433593295|ref|YP_007282781.1| - 0.0076 16.3 8.6 0.57 10.3 0.4 3.1 2 0 0 2 2 2 2 Domain of unknown function (DUF4611) AAA_23 PF13476.1 gi|433593295|ref|YP_007282781.1| - 0.012 15.9 2.0 0.012 15.9 1.4 3.3 2 1 0 2 2 2 0 AAA domain DUF2075 PF09848.4 gi|433593295|ref|YP_007282781.1| - 0.021 13.8 0.0 0.021 13.8 0.0 3.4 4 1 0 4 4 4 0 Uncharacterized conserved protein (DUF2075) Pyrophosphatase PF00719.14 gi|433593295|ref|YP_007282781.1| - 0.13 11.6 3.2 3.2 7.1 0.2 2.6 2 0 0 2 2 2 0 Inorganic pyrophosphatase DDE_Tnp_1 PF01609.16 gi|433593297|ref|YP_007282783.1| - 1.3e-25 90.1 0.0 1.8e-25 89.7 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_2 PF04693.7 gi|433593297|ref|YP_007282783.1| - 0.0012 17.9 0.1 0.0018 17.3 0.1 1.2 1 0 0 1 1 1 1 Archaeal putative transposase ISC1217 DDE_Tnp_1_2 PF13586.1 gi|433593297|ref|YP_007282783.1| - 0.0082 16.3 0.0 0.023 14.8 0.0 1.7 1 0 0 1 1 1 1 Transposase DDE domain DUF2249 PF10006.4 gi|433593297|ref|YP_007282783.1| - 0.022 14.3 0.2 0.067 12.7 0.1 1.9 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2249) DUF159 PF02586.9 gi|433593298|ref|YP_007282784.1| - 4.3e-61 206.0 0.0 4.8e-61 205.9 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised ACR, COG2135 CorA PF01544.13 gi|433593301|ref|YP_007282787.1| - 0.025 13.6 1.5 0.028 13.4 1.0 1.0 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein Laminin_I PF06008.9 gi|433593301|ref|YP_007282787.1| - 0.069 12.4 2.2 0.077 12.2 1.5 1.2 1 0 0 1 1 1 0 Laminin Domain I MutL_C PF08676.6 gi|433593301|ref|YP_007282787.1| - 0.082 12.5 0.1 0.1 12.1 0.1 1.2 1 0 0 1 1 1 0 MutL C terminal dimerisation domain HSBP1 PF06825.7 gi|433593301|ref|YP_007282787.1| - 0.1 12.1 0.1 0.18 11.4 0.1 1.3 1 0 0 1 1 1 0 Heat shock factor binding protein 1 PilJ PF13675.1 gi|433593301|ref|YP_007282787.1| - 0.23 11.8 3.7 2.8 8.2 0.1 2.0 1 1 1 2 2 2 0 Type IV pili methyl-accepting chemotaxis transducer N-term Spectrin PF00435.16 gi|433593301|ref|YP_007282787.1| - 0.29 11.4 1.9 5.5 7.3 0.0 2.3 2 1 0 2 2 2 0 Spectrin repeat HXXSHH PF07586.6 gi|433593301|ref|YP_007282787.1| - 0.33 9.8 2.1 2.8 6.7 0.4 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1552) DNA_pol_B PF00136.16 gi|433593302|ref|YP_007282788.1| - 2.7e-41 141.8 0.0 4.3e-41 141.1 0.0 1.2 1 0 0 1 1 1 1 DNA polymerase family B Glycos_transf_N PF04413.11 gi|433593302|ref|YP_007282788.1| - 0.035 13.2 0.0 0.064 12.4 0.0 1.3 1 0 0 1 1 1 0 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase)