# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- Cdc6_C PF09079.11 gi|433593058|ref|YP_007282544.1| - 1e-13 51.1 0.0 2.3e-13 49.9 0.0 1.6 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain AAA_22 PF13401.6 gi|433593058|ref|YP_007282544.1| - 2.9e-11 43.8 0.0 1.3e-10 41.7 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|433593058|ref|YP_007282544.1| - 1.6e-07 31.8 0.0 5e-07 30.3 0.0 1.9 2 1 0 2 2 2 1 AAA ATPase domain AAA PF00004.29 gi|433593058|ref|YP_007282544.1| - 1.5e-05 25.4 0.0 5.4e-05 23.6 0.0 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DUF815 PF05673.13 gi|433593058|ref|YP_007282544.1| - 0.004 16.3 0.0 0.0064 15.7 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF815) Sigma54_activat PF00158.26 gi|433593058|ref|YP_007282544.1| - 0.0058 16.3 0.0 0.012 15.3 0.0 1.5 1 0 0 1 1 1 1 Sigma-54 interaction domain AAA_5 PF07728.14 gi|433593058|ref|YP_007282544.1| - 0.0061 16.6 0.0 0.47 10.4 0.0 2.6 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) ResIII PF04851.15 gi|433593058|ref|YP_007282544.1| - 0.052 13.5 0.0 0.17 11.9 0.0 1.8 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit TniB PF05621.11 gi|433593058|ref|YP_007282544.1| - 0.067 12.6 0.0 0.21 11.0 0.0 1.8 1 1 0 1 1 1 0 Bacterial TniB protein RuvB_N PF05496.12 gi|433593058|ref|YP_007282544.1| - 0.085 12.6 0.0 0.71 9.6 0.0 2.1 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain AAA_7 PF12775.7 gi|433593058|ref|YP_007282544.1| - 0.1 12.1 0.0 0.19 11.2 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region TsaE PF02367.17 gi|433593058|ref|YP_007282544.1| - 0.13 12.3 0.0 0.25 11.3 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE RNA_helicase PF00910.22 gi|433593058|ref|YP_007282544.1| - 0.13 12.6 0.0 0.55 10.6 0.0 2.1 1 0 0 1 1 1 0 RNA helicase NACHT PF05729.12 gi|433593058|ref|YP_007282544.1| - 0.16 11.9 0.0 0.28 11.1 0.0 1.4 1 0 0 1 1 1 0 NACHT domain Mg_chelatase_C PF13335.6 gi|433593058|ref|YP_007282544.1| - 0.16 12.6 0.1 0.39 11.4 0.1 1.6 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI C-terminal CSTF2_hinge PF14327.6 gi|433593060|ref|YP_007282546.1| - 0.084 13.3 0.0 0.14 12.7 0.0 1.2 1 0 0 1 1 1 0 Hinge domain of cleavage stimulation factor subunit 2 DUF2274 PF10038.9 gi|433593060|ref|YP_007282546.1| - 0.13 12.7 1.0 4.2 7.9 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2274) MarR_2 PF12802.7 gi|433593061|ref|YP_007282547.1| - 1e-14 54.2 1.3 6.6e-08 32.3 0.6 2.6 2 0 0 2 2 2 2 MarR family TrmB PF01978.19 gi|433593061|ref|YP_007282547.1| - 2.7e-09 36.8 0.2 0.00039 20.2 0.0 2.5 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.20 gi|433593061|ref|YP_007282547.1| - 2e-08 34.4 0.0 0.002 18.4 0.0 2.4 2 0 0 2 2 2 2 Transcriptional regulator MarR PF01047.22 gi|433593061|ref|YP_007282547.1| - 7.2e-08 32.2 0.0 0.0036 17.2 0.0 2.5 2 0 0 2 2 2 2 MarR family HTH_24 PF13412.6 gi|433593061|ref|YP_007282547.1| - 1.5e-07 30.8 0.1 0.0063 16.0 0.0 2.5 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_27 PF13463.6 gi|433593061|ref|YP_007282547.1| - 5.4e-07 30.0 1.0 4e-06 27.2 0.3 2.3 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_23 PF13384.6 gi|433593061|ref|YP_007282547.1| - 2.2e-06 27.3 0.1 0.016 15.0 0.0 2.7 2 0 0 2 2 2 2 Homeodomain-like domain HTH_Crp_2 PF13545.6 gi|433593061|ref|YP_007282547.1| - 3.8e-06 26.8 0.0 0.00093 19.1 0.0 2.5 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_29 PF13551.6 gi|433593061|ref|YP_007282547.1| - 4.1e-06 26.7 0.2 0.057 13.4 0.0 2.6 2 0 0 2 2 2 2 Winged helix-turn helix HTH_IclR PF09339.10 gi|433593061|ref|YP_007282547.1| - 8.4e-06 25.5 0.1 0.2 11.5 0.0 2.9 2 0 0 2 2 2 2 IclR helix-turn-helix domain HTH_28 PF13518.6 gi|433593061|ref|YP_007282547.1| - 1.3e-05 25.2 1.3 0.033 14.3 0.0 3.0 3 0 0 3 3 3 2 Helix-turn-helix domain HTH_20 PF12840.7 gi|433593061|ref|YP_007282547.1| - 1.6e-05 24.9 0.3 0.068 13.2 0.0 2.7 2 0 0 2 2 2 2 Helix-turn-helix domain GntR PF00392.21 gi|433593061|ref|YP_007282547.1| - 0.0024 17.5 0.0 2.7 7.7 0.0 2.6 2 0 0 2 2 2 2 Bacterial regulatory proteins, gntR family DUF746 PF05344.11 gi|433593061|ref|YP_007282547.1| - 0.0027 17.5 0.0 0.006 16.4 0.0 1.6 1 0 0 1 1 1 1 Domain of Unknown Function (DUF746) Penicillinase_R PF03965.16 gi|433593061|ref|YP_007282547.1| - 0.0044 17.4 0.0 4.2 7.7 0.0 2.4 2 0 0 2 2 2 2 Penicillinase repressor Crp PF00325.20 gi|433593061|ref|YP_007282547.1| - 0.0049 16.5 0.7 0.026 14.2 0.3 2.2 2 0 0 2 2 2 1 Bacterial regulatory proteins, crp family HTH_5 PF01022.20 gi|433593061|ref|YP_007282547.1| - 0.0074 16.1 0.0 3.4 7.6 0.0 2.5 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family LZ_Tnp_IS481 PF13011.6 gi|433593061|ref|YP_007282547.1| - 0.071 13.7 0.0 0.17 12.5 0.0 1.6 1 0 0 1 1 1 0 leucine-zipper of insertion element IS481 RP-C PF03428.13 gi|433593061|ref|YP_007282547.1| - 0.099 12.3 0.2 0.36 10.5 0.0 1.9 2 0 0 2 2 2 0 Replication protein C N-terminal domain HTH_47 PF16221.5 gi|433593061|ref|YP_007282547.1| - 0.14 11.7 0.0 3.7 7.2 0.0 2.7 3 0 0 3 3 3 0 winged helix-turn-helix HTH_38 PF13936.6 gi|433593061|ref|YP_007282547.1| - 0.3 10.9 1.4 2.9 7.7 0.0 2.8 3 0 0 3 3 3 0 Helix-turn-helix domain HTH_20 PF12840.7 gi|433593062|ref|YP_007282548.1| - 0.00089 19.3 0.1 0.0021 18.0 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain DUF2204 PF09970.9 gi|433593062|ref|YP_007282548.1| - 0.011 15.4 0.2 0.17 11.5 0.0 2.1 2 0 0 2 2 2 0 Nucleotidyl transferase of unknown function (DUF2204) TFIIE_beta PF02186.15 gi|433593062|ref|YP_007282548.1| - 0.024 14.9 0.0 0.049 13.9 0.0 1.5 1 0 0 1 1 1 0 TFIIE beta subunit core domain HTH_AsnC-type PF13404.6 gi|433593062|ref|YP_007282548.1| - 0.049 13.5 0.0 0.094 12.6 0.0 1.5 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain MarR_2 PF12802.7 gi|433593062|ref|YP_007282548.1| - 0.068 13.1 0.0 0.16 11.9 0.0 1.6 1 0 0 1 1 1 0 MarR family SWIM PF04434.17 gi|433593063|ref|YP_007282549.1| - 0.017 14.8 0.6 0.047 13.4 0.6 1.7 1 1 0 1 1 1 0 SWIM zinc finger Peptidase_M78 PF06114.13 gi|433593064|ref|YP_007282550.1| - 0.003 17.5 0.0 0.0053 16.7 0.0 1.4 1 0 0 1 1 1 1 IrrE N-terminal-like domain SprT-like PF10263.9 gi|433593064|ref|YP_007282550.1| - 0.014 15.2 0.3 0.04 13.8 0.1 1.7 2 0 0 2 2 2 0 SprT-like family Aminopep PF10023.9 gi|433593064|ref|YP_007282550.1| - 0.047 13.1 0.0 0.074 12.4 0.0 1.4 1 0 0 1 1 1 0 Putative aminopeptidase DUF2268 PF10026.9 gi|433593064|ref|YP_007282550.1| - 0.091 12.3 0.0 0.18 11.4 0.0 1.4 1 0 0 1 1 1 0 Predicted Zn-dependent protease (DUF2268) SBF PF01758.16 gi|433593065|ref|YP_007282551.1| - 8.9e-19 67.9 7.1 8.9e-19 67.9 7.1 2.5 2 1 1 3 3 3 1 Sodium Bile acid symporter family MscS_TM PF12794.7 gi|433593065|ref|YP_007282551.1| - 8.9 5.1 21.4 0.78 8.5 13.1 2.8 2 1 0 2 2 2 0 Mechanosensitive ion channel inner membrane domain 1 Ribonuc_L-PSP PF01042.21 gi|433593068|ref|YP_007282554.1| - 3.6e-20 72.2 0.0 4.5e-20 71.9 0.0 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP HTH_20 PF12840.7 gi|433593069|ref|YP_007282555.1| - 3.1e-10 39.9 1.3 4.4e-10 39.5 0.3 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|433593069|ref|YP_007282555.1| - 8.2e-08 32.0 0.4 1.8e-07 30.9 0.2 1.7 1 1 1 2 2 2 1 Bacterial regulatory protein, arsR family HTH_27 PF13463.6 gi|433593069|ref|YP_007282555.1| - 0.0039 17.6 0.0 0.0074 16.8 0.0 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain DUF4423 PF14394.6 gi|433593069|ref|YP_007282555.1| - 0.0067 16.1 0.0 0.011 15.4 0.0 1.3 1 1 0 1 1 1 1 Domain of unknown function (DUF4423) TrmB PF01978.19 gi|433593069|ref|YP_007282555.1| - 0.0073 16.2 0.0 0.012 15.5 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|433593069|ref|YP_007282555.1| - 0.0081 16.0 0.1 0.025 14.5 0.1 1.9 1 1 0 1 1 1 1 MarR family GntR PF00392.21 gi|433593069|ref|YP_007282555.1| - 0.014 15.1 0.0 0.03 14.0 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family PaaX PF07848.12 gi|433593069|ref|YP_007282555.1| - 0.027 14.7 0.0 0.047 13.9 0.0 1.5 1 0 0 1 1 1 0 PaaX-like protein HTH_34 PF13601.6 gi|433593069|ref|YP_007282555.1| - 0.073 13.3 0.0 0.13 12.5 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain SBF PF01758.16 gi|433593070|ref|YP_007282556.1| - 2.3e-51 174.3 9.5 2.3e-51 174.3 9.5 1.9 2 0 0 2 2 2 1 Sodium Bile acid symporter family PMT_4TMC PF16192.5 gi|433593070|ref|YP_007282556.1| - 6.7 6.2 9.0 5.5 6.5 1.5 3.0 3 0 0 3 3 3 0 C-terminal four TMM region of protein-O-mannosyltransferase LMWPc PF01451.21 gi|433593071|ref|YP_007282557.1| - 2.6e-29 102.4 0.3 8.1e-29 100.8 0.3 1.6 1 1 0 1 1 1 1 Low molecular weight phosphotyrosine protein phosphatase ACP53EA PF06313.11 gi|433593072|ref|YP_007282558.1| - 0.015 15.5 0.0 0.03 14.5 0.0 1.4 1 1 1 2 2 2 0 Drosophila ACP53EA protein Pyr_redox_2 PF07992.14 gi|433593073|ref|YP_007282559.1| - 3.4e-55 187.3 2.5 5.5e-55 186.7 2.5 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|433593073|ref|YP_007282559.1| - 2.3e-31 108.3 0.7 3.7e-31 107.6 0.7 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.27 gi|433593073|ref|YP_007282559.1| - 1.7e-13 50.9 0.9 5.6e-13 49.3 0.2 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|433593073|ref|YP_007282559.1| - 0.00016 20.9 0.8 0.0035 16.5 0.3 2.4 1 1 1 2 2 2 1 FAD binding domain FAD_oxidored PF12831.7 gi|433593073|ref|YP_007282559.1| - 0.00041 19.8 1.9 0.00059 19.3 0.3 1.9 2 0 0 2 2 2 1 FAD dependent oxidoreductase Pyr_redox_3 PF13738.6 gi|433593073|ref|YP_007282559.1| - 0.00048 19.5 0.4 0.0018 17.6 0.1 1.9 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase K_oxygenase PF13434.6 gi|433593073|ref|YP_007282559.1| - 0.057 12.5 0.0 5.8 5.9 0.1 2.3 1 1 1 2 2 2 0 L-lysine 6-monooxygenase (NADPH-requiring) 3HCDH_N PF02737.18 gi|433593073|ref|YP_007282559.1| - 0.073 13.0 2.0 0.075 12.9 0.5 1.7 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GIDA PF01134.22 gi|433593073|ref|YP_007282559.1| - 0.15 11.1 6.6 0.097 11.7 2.6 2.5 2 1 0 2 2 2 0 Glucose inhibited division protein A HxlR PF01638.17 gi|433593074|ref|YP_007282560.1| - 1.2e-17 63.5 0.0 1.3e-17 63.4 0.0 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix MarR_2 PF12802.7 gi|433593074|ref|YP_007282560.1| - 0.0005 19.9 0.0 0.0008 19.3 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_34 PF13601.6 gi|433593074|ref|YP_007282560.1| - 0.0014 18.8 0.0 0.0018 18.4 0.0 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain PadR PF03551.14 gi|433593074|ref|YP_007282560.1| - 0.002 18.1 0.0 0.0031 17.4 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family MarR PF01047.22 gi|433593074|ref|YP_007282560.1| - 0.019 14.9 0.1 0.039 13.9 0.0 1.6 2 0 0 2 2 2 0 MarR family Replic_Relax PF13814.6 gi|433593074|ref|YP_007282560.1| - 0.032 14.3 0.0 0.037 14.1 0.0 1.1 1 0 0 1 1 1 0 Replication-relaxation HTH_20 PF12840.7 gi|433593074|ref|YP_007282560.1| - 0.036 14.1 0.0 0.066 13.3 0.0 1.5 2 0 0 2 2 2 0 Helix-turn-helix domain FUR PF01475.19 gi|433593074|ref|YP_007282560.1| - 0.046 13.9 0.0 0.051 13.7 0.0 1.2 1 0 0 1 1 1 0 Ferric uptake regulator family HTH_Crp_2 PF13545.6 gi|433593074|ref|YP_007282560.1| - 0.058 13.4 0.0 0.098 12.6 0.0 1.3 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain DUF993 PF06187.11 gi|433593076|ref|YP_007282562.1| - 0.0036 16.3 0.1 0.0055 15.7 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF993) DUF402 PF04167.13 gi|433593076|ref|YP_007282562.1| - 0.052 13.8 0.0 0.12 12.6 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF402) TSC22 PF01166.18 gi|433593082|ref|YP_007282568.1| - 0.013 15.7 0.4 0.022 15.1 0.4 1.3 1 0 0 1 1 1 0 TSC-22/dip/bun family SNAP-25 PF00835.19 gi|433593082|ref|YP_007282568.1| - 0.12 12.7 0.0 12 6.3 0.0 2.1 2 0 0 2 2 2 0 SNAP-25 family RPA_interact_C PF14768.6 gi|433593084|ref|YP_007282570.1| - 0.0039 17.7 0.4 0.0051 17.3 0.4 1.2 1 0 0 1 1 1 1 Replication protein A interacting C-terminal zinc_ribbon_2 PF13240.6 gi|433593084|ref|YP_007282570.1| - 0.0075 15.9 1.5 3.2 7.6 0.1 2.3 2 0 0 2 2 2 2 zinc-ribbon domain DUF2318 PF10080.9 gi|433593084|ref|YP_007282570.1| - 0.014 15.5 0.1 0.017 15.2 0.1 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2318) DZR PF12773.7 gi|433593084|ref|YP_007282570.1| - 0.017 15.2 1.0 0.026 14.5 1.0 1.3 1 0 0 1 1 1 0 Double zinc ribbon Nudix_N_2 PF14803.6 gi|433593084|ref|YP_007282570.1| - 0.051 13.5 2.8 6.2 6.8 0.1 2.7 3 0 0 3 3 3 0 Nudix N-terminal GFA PF04828.14 gi|433593084|ref|YP_007282570.1| - 0.054 13.8 1.2 1.2 9.5 0.1 2.2 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme DpnI PF06044.12 gi|433593084|ref|YP_007282570.1| - 0.079 12.6 0.5 0.11 12.1 0.5 1.2 1 0 0 1 1 1 0 Dam-replacing family A2L_zn_ribbon PF08792.10 gi|433593084|ref|YP_007282570.1| - 0.08 12.7 1.0 0.75 9.6 0.1 2.1 2 0 0 2 2 2 0 A2L zinc ribbon domain DNA_ligase_ZBD PF03119.16 gi|433593084|ref|YP_007282570.1| - 1.4 9.0 5.8 1.5 8.9 0.3 2.6 3 0 0 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain Zn-ribbon_8 PF09723.10 gi|433593084|ref|YP_007282570.1| - 1.7 8.8 4.1 16 5.8 0.7 2.3 1 1 2 3 3 3 0 Zinc ribbon domain RNA_POL_M_15KD PF02150.16 gi|433593085|ref|YP_007282571.1| - 0.0096 15.8 0.2 0.0096 15.8 0.2 2.1 2 0 0 2 2 2 1 RNA polymerases M/15 Kd subunit Lar_restr_allev PF14354.6 gi|433593085|ref|YP_007282571.1| - 0.02 15.3 0.7 0.059 13.8 0.5 1.7 2 0 0 2 2 2 0 Restriction alleviation protein Lar Elf1 PF05129.13 gi|433593085|ref|YP_007282571.1| - 0.093 12.8 0.0 0.13 12.3 0.0 1.3 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like Rubredoxin_2 PF18073.1 gi|433593085|ref|YP_007282571.1| - 1.9 8.3 6.0 0.57 10.0 0.3 2.4 2 0 0 2 2 2 0 Rubredoxin metal binding domain E1-E2_ATPase PF00122.20 gi|433593088|ref|YP_007282574.1| - 1.1e-56 191.2 0.5 4.1e-56 189.4 0.6 2.0 2 0 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.26 gi|433593088|ref|YP_007282574.1| - 1.3e-41 143.2 10.1 1.6e-41 142.9 8.3 2.1 2 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase HMA PF00403.26 gi|433593088|ref|YP_007282574.1| - 2.3e-17 63.2 0.2 4.7e-16 59.0 0.0 2.9 3 0 0 3 3 3 1 Heavy-metal-associated domain Hydrolase_3 PF08282.12 gi|433593088|ref|YP_007282574.1| - 0.00065 19.5 0.9 0.0058 16.4 0.5 2.2 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|433593088|ref|YP_007282574.1| - 0.0011 19.4 0.7 0.0048 17.3 0.4 2.4 2 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase Myosin_N PF02736.19 gi|433593088|ref|YP_007282574.1| - 0.08 12.8 0.0 11 5.9 0.0 2.9 2 0 0 2 2 2 0 Myosin N-terminal SH3-like domain HTH_10 PF04967.12 gi|433593089|ref|YP_007282575.1| - 2.2e-15 56.2 0.3 4.1e-15 55.3 0.0 1.6 2 0 0 2 2 2 1 HTH DNA binding domain MarR_2 PF12802.7 gi|433593089|ref|YP_007282575.1| - 4.1e-05 23.4 0.2 0.0002 21.2 0.0 2.3 3 0 0 3 3 3 1 MarR family HTH_30 PF13556.6 gi|433593089|ref|YP_007282575.1| - 6.7e-05 22.6 0.1 0.00022 21.0 0.1 1.8 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain HTH_8 PF02954.19 gi|433593089|ref|YP_007282575.1| - 0.0047 16.7 0.0 0.011 15.5 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, Fis family HTH_psq PF05225.16 gi|433593089|ref|YP_007282575.1| - 0.0084 15.8 0.3 0.028 14.2 0.3 1.9 1 1 0 1 1 1 1 helix-turn-helix, Psq domain HTH_24 PF13412.6 gi|433593089|ref|YP_007282575.1| - 0.012 15.1 0.0 0.023 14.2 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|433593089|ref|YP_007282575.1| - 0.012 15.6 0.7 0.033 14.3 0.1 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_5 PF01022.20 gi|433593089|ref|YP_007282575.1| - 0.071 13.0 0.0 0.15 12.0 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_IclR PF09339.10 gi|433593089|ref|YP_007282575.1| - 0.081 12.7 0.1 0.26 11.1 0.0 1.9 2 0 0 2 2 2 0 IclR helix-turn-helix domain HTH_28 PF13518.6 gi|433593089|ref|YP_007282575.1| - 0.094 12.9 0.1 0.24 11.6 0.1 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|433593089|ref|YP_007282575.1| - 0.13 12.0 0.0 0.52 10.0 0.0 1.9 2 0 0 2 2 2 0 Sigma-70, region 4 DUF4988 PF16378.5 gi|433593091|ref|YP_007282577.1| - 0.17 11.6 0.0 0.29 10.8 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function zf-ribbon_3 PF13248.6 gi|433593094|ref|YP_007282580.1| - 0.0049 16.2 2.6 0.0049 16.2 2.6 2.8 3 0 0 3 3 3 1 zinc-ribbon domain RNA_POL_M_15KD PF02150.16 gi|433593094|ref|YP_007282580.1| - 0.032 14.1 8.9 2.4 8.1 0.3 4.7 5 0 0 5 5 5 0 RNA polymerases M/15 Kd subunit zinc_ribbon_15 PF17032.5 gi|433593094|ref|YP_007282580.1| - 0.35 11.7 9.7 2.6 8.9 0.1 3.6 3 1 1 4 4 4 0 zinc-ribbon family HypA PF01155.19 gi|433593094|ref|YP_007282580.1| - 0.69 10.0 6.5 9 6.4 1.0 2.4 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DZR PF12773.7 gi|433593094|ref|YP_007282580.1| - 3.7 7.7 14.3 0.29 11.2 0.3 3.7 2 1 0 2 2 2 0 Double zinc ribbon TFIIB PF00382.19 gi|433593095|ref|YP_007282581.1| - 9.7e-32 108.8 0.5 3e-16 59.2 0.2 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|433593095|ref|YP_007282581.1| - 9.1e-13 47.5 2.3 1.6e-12 46.7 2.3 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding RB_B PF01857.20 gi|433593095|ref|YP_007282581.1| - 0.00076 19.5 0.0 0.0015 18.5 0.0 1.4 1 0 0 1 1 1 1 Retinoblastoma-associated protein B domain Cyclin_C PF02984.19 gi|433593095|ref|YP_007282581.1| - 0.015 15.4 0.0 0.12 12.5 0.0 2.1 2 0 0 2 2 2 0 Cyclin, C-terminal domain DZR PF12773.7 gi|433593095|ref|YP_007282581.1| - 0.055 13.5 1.0 0.11 12.5 1.0 1.4 1 0 0 1 1 1 0 Double zinc ribbon UPF0547 PF10571.9 gi|433593095|ref|YP_007282581.1| - 0.15 12.1 1.9 0.31 11.1 1.9 1.5 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 OrfB_Zn_ribbon PF07282.11 gi|433593095|ref|YP_007282581.1| - 0.18 11.8 1.1 0.42 10.6 1.1 1.6 1 0 0 1 1 1 0 Putative transposase DNA-binding domain LacI PF00356.21 gi|433593095|ref|YP_007282581.1| - 8 6.4 6.6 3.2 7.6 2.1 2.5 3 0 0 3 3 3 0 Bacterial regulatory proteins, lacI family SIR2_2 PF13289.6 gi|433593096|ref|YP_007282582.1| - 4.4e-21 75.5 0.2 1.5e-20 73.8 0.3 1.8 2 0 0 2 2 2 1 SIR2-like domain AbiH PF14253.6 gi|433593096|ref|YP_007282582.1| - 0.00089 19.2 0.1 0.0014 18.6 0.1 1.3 1 0 0 1 1 1 1 Bacteriophage abortive infection AbiH Phageshock_PspG PF09583.10 gi|433593099|ref|YP_007282585.1| - 0.12 12.7 6.0 0.16 12.3 6.0 1.3 1 0 0 1 1 1 0 Phage shock protein G (Phageshock_PspG) tRNA_anti-codon PF01336.25 gi|433593101|ref|YP_007282587.1| - 0.0046 16.9 0.1 0.0089 16.0 0.1 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA_anti_2 PF13742.6 gi|433593101|ref|YP_007282587.1| - 0.023 14.9 0.0 0.05 13.8 0.0 1.5 1 0 0 1 1 1 0 OB-fold nucleic acid binding domain TrmB PF01978.19 gi|433593103|ref|YP_007282589.1| - 1.4e-09 37.7 0.2 2.7e-09 36.8 0.2 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|433593103|ref|YP_007282589.1| - 7.8e-08 31.8 0.0 1.7e-06 27.5 0.0 2.6 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|433593103|ref|YP_007282589.1| - 2.3e-07 30.7 0.2 5.9e-07 29.5 0.2 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|433593103|ref|YP_007282589.1| - 3.3e-05 23.7 0.0 9.5e-05 22.2 0.0 1.7 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|433593103|ref|YP_007282589.1| - 3.6e-05 23.6 0.1 9.3e-05 22.2 0.1 1.8 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|433593103|ref|YP_007282589.1| - 0.00028 20.6 0.3 0.0008 19.2 0.1 2.0 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_27 PF13463.6 gi|433593103|ref|YP_007282589.1| - 0.0025 18.3 0.1 0.0048 17.4 0.1 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain PadR PF03551.14 gi|433593103|ref|YP_007282589.1| - 0.0029 17.5 0.1 0.0065 16.4 0.1 1.7 1 1 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_29 PF13551.6 gi|433593103|ref|YP_007282589.1| - 0.0059 16.6 0.1 0.02 14.9 0.0 1.9 2 0 0 2 2 2 1 Winged helix-turn helix MarR PF01047.22 gi|433593103|ref|YP_007282589.1| - 0.016 15.2 0.0 0.03 14.2 0.0 1.5 1 0 0 1 1 1 0 MarR family RP-C PF03428.13 gi|433593103|ref|YP_007282589.1| - 0.03 14.0 0.0 0.052 13.2 0.0 1.3 1 0 0 1 1 1 0 Replication protein C N-terminal domain HTH_DeoR PF08220.12 gi|433593103|ref|YP_007282589.1| - 0.035 13.8 0.0 0.12 12.1 0.0 1.9 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain Penicillinase_R PF03965.16 gi|433593103|ref|YP_007282589.1| - 0.037 14.4 0.0 0.068 13.5 0.0 1.4 1 0 0 1 1 1 0 Penicillinase repressor HTH_11 PF08279.12 gi|433593103|ref|YP_007282589.1| - 0.085 12.8 0.0 0.65 10.0 0.0 2.2 2 0 0 2 2 2 0 HTH domain F-112 PF09645.10 gi|433593103|ref|YP_007282589.1| - 0.13 12.4 0.0 19 5.4 0.0 2.2 2 0 0 2 2 2 0 F-112 protein TF_Zn_Ribbon PF08271.12 gi|433593104|ref|YP_007282590.1| - 0.062 12.8 1.1 0.2 11.2 1.0 1.9 1 1 0 1 1 1 0 TFIIB zinc-binding DZR PF12773.7 gi|433593104|ref|YP_007282590.1| - 0.52 10.4 5.4 4.4 7.4 5.4 2.4 1 1 0 1 1 1 0 Double zinc ribbon DUF3073 PF11273.8 gi|433593105|ref|YP_007282591.1| - 0.12 13.2 0.8 0.17 12.7 0.8 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3073) Lactamase_B PF00753.27 gi|433593106|ref|YP_007282592.1| - 1.6e-07 31.6 4.5 1.6e-07 31.6 4.5 2.2 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|433593106|ref|YP_007282592.1| - 1.2e-06 28.2 1.9 1.2e-06 28.2 1.9 2.0 3 0 0 3 3 3 1 Beta-lactamase superfamily domain Creatininase PF02633.14 gi|433593107|ref|YP_007282593.1| - 1.5e-64 217.8 0.5 1.7e-64 217.6 0.5 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase Phage_tail_U PF06141.11 gi|433593108|ref|YP_007282594.1| - 0.063 13.7 0.1 0.07 13.5 0.1 1.1 1 0 0 1 1 1 0 Phage minor tail protein U Parvo_coat_N PF08398.10 gi|433593108|ref|YP_007282594.1| - 0.088 13.0 0.0 0.23 11.6 0.0 1.7 1 1 0 1 1 1 0 Parvovirus coat protein VP1 SlyX PF04102.12 gi|433593109|ref|YP_007282595.1| - 0.0028 18.2 0.7 0.033 14.8 0.4 2.5 2 0 0 2 2 2 1 SlyX ATG16 PF08614.11 gi|433593109|ref|YP_007282595.1| - 0.0039 17.4 2.7 0.0039 17.4 2.7 1.9 2 0 0 2 2 2 1 Autophagy protein 16 (ATG16) HAP1_N PF04849.13 gi|433593109|ref|YP_007282595.1| - 0.0047 16.2 0.2 0.0075 15.5 0.2 1.2 1 0 0 1 1 1 1 HAP1 N-terminal conserved region ZapB PF06005.12 gi|433593109|ref|YP_007282595.1| - 0.012 16.1 1.7 0.024 15.1 1.7 1.5 1 0 0 1 1 1 0 Cell division protein ZapB DivIC PF04977.15 gi|433593109|ref|YP_007282595.1| - 0.021 14.6 1.0 0.054 13.3 1.0 1.6 1 0 0 1 1 1 0 Septum formation initiator Prefoldin PF02996.17 gi|433593109|ref|YP_007282595.1| - 0.52 10.2 3.0 0.5 10.3 1.6 1.7 2 0 0 2 2 2 0 Prefoldin subunit TrwB_AAD_bind PF10412.9 gi|433593110|ref|YP_007282596.1| - 6.3e-09 35.2 0.0 6.3e-05 22.1 0.0 2.1 2 0 0 2 2 2 2 Type IV secretion-system coupling protein DNA-binding domain T4SS-DNA_transf PF02534.14 gi|433593110|ref|YP_007282596.1| - 2.2e-06 26.8 0.0 6.5e-05 21.9 0.2 2.1 2 0 0 2 2 2 1 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 gi|433593110|ref|YP_007282596.1| - 2.2e-06 27.6 0.0 5.2e-06 26.5 0.0 1.6 1 0 0 1 1 1 1 TraM recognition site of TraD and TraG FtsK_SpoIIIE PF01580.18 gi|433593110|ref|YP_007282596.1| - 0.00089 18.7 0.4 0.64 9.3 0.0 3.1 3 0 0 3 3 3 2 FtsK/SpoIIIE family HHH_6 PF14579.6 gi|433593110|ref|YP_007282596.1| - 0.026 14.8 0.0 0.061 13.6 0.0 1.6 1 0 0 1 1 1 0 Helix-hairpin-helix motif DUF87 PF01935.17 gi|433593110|ref|YP_007282596.1| - 0.044 13.9 0.0 0.14 12.2 0.0 1.9 1 1 0 1 1 1 0 Helicase HerA, central domain NACHT PF05729.12 gi|433593110|ref|YP_007282596.1| - 0.069 13.1 0.0 0.23 11.3 0.0 1.8 2 0 0 2 2 2 0 NACHT domain AAA_22 PF13401.6 gi|433593110|ref|YP_007282596.1| - 0.11 12.8 0.0 4.2 7.6 0.0 2.8 2 0 0 2 2 2 0 AAA domain Pox_D5 PF03288.16 gi|433593110|ref|YP_007282596.1| - 0.14 12.6 0.0 0.32 11.5 0.0 1.5 1 0 0 1 1 1 0 Poxvirus D5 protein-like Rsa3 PF14615.6 gi|433593111|ref|YP_007282597.1| - 0.13 11.8 0.0 0.33 10.5 0.0 1.7 1 0 0 1 1 1 0 Ribosome-assembly protein 3 TraG-D_C PF12696.7 gi|433593112|ref|YP_007282598.1| - 0.0002 21.3 0.0 0.00042 20.3 0.0 1.5 1 0 0 1 1 1 1 TraM recognition site of TraD and TraG AAA_22 PF13401.6 gi|433593112|ref|YP_007282598.1| - 0.0025 18.1 0.1 0.13 12.5 0.1 2.7 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|433593112|ref|YP_007282598.1| - 0.0041 17.5 0.7 0.29 11.5 0.2 3.3 3 0 0 3 3 3 1 AAA ATPase domain Zot PF05707.12 gi|433593112|ref|YP_007282598.1| - 0.0081 15.8 0.1 0.099 12.3 0.1 2.2 2 0 0 2 2 2 1 Zonular occludens toxin (Zot) OpcA_G6PD_assem PF10128.9 gi|433593112|ref|YP_007282598.1| - 0.03 13.8 0.4 0.097 12.2 0.1 1.9 2 0 0 2 2 2 0 Glucose-6-phosphate dehydrogenase subunit DUF3487 PF11990.8 gi|433593112|ref|YP_007282598.1| - 0.034 14.0 0.6 0.075 12.9 0.6 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3487) DUF883 PF05957.13 gi|433593113|ref|YP_007282599.1| - 0.51 11.0 4.9 1.6 9.4 4.9 1.8 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF883) LTD PF00932.19 gi|433593114|ref|YP_007282600.1| - 0.0049 17.2 0.0 0.095 13.1 0.0 2.3 2 0 0 2 2 2 1 Lamin Tail Domain FlgD_ig PF13860.6 gi|433593114|ref|YP_007282600.1| - 0.008 16.0 0.2 0.019 14.8 0.2 1.7 1 0 0 1 1 1 1 FlgD Ig-like domain TrbC PF04956.13 gi|433593116|ref|YP_007282602.1| - 0.0051 17.0 0.3 0.0076 16.4 0.3 1.2 1 0 0 1 1 1 1 TrbC/VIRB2 family ATP-synt_C PF00137.21 gi|433593116|ref|YP_007282602.1| - 0.1 12.9 9.4 4.6 7.7 2.1 2.7 1 1 1 2 2 2 0 ATP synthase subunit C DUF2304 PF10066.9 gi|433593116|ref|YP_007282602.1| - 0.22 11.8 0.0 3.8 7.8 0.0 2.1 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2304) CsgG PF03783.14 gi|433593117|ref|YP_007282603.1| - 0.017 14.5 0.2 0.018 14.3 0.2 1.0 1 0 0 1 1 1 0 Curli production assembly/transport component CsgG SATase_N PF06426.14 gi|433593117|ref|YP_007282603.1| - 0.09 13.2 0.1 0.11 12.9 0.1 1.2 1 0 0 1 1 1 0 Serine acetyltransferase, N-terminal C1_1 PF00130.22 gi|433593118|ref|YP_007282604.1| - 0.00073 19.4 1.5 0.00073 19.4 1.5 2.1 1 1 1 2 2 2 1 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-UDP PF14569.6 gi|433593118|ref|YP_007282604.1| - 0.02 15.0 3.7 0.027 14.6 3.7 1.3 1 1 0 1 1 1 0 Zinc-binding RING-finger zf_C2H2_10 PF18414.1 gi|433593118|ref|YP_007282604.1| - 0.033 13.7 1.8 3.6 7.2 0.2 2.6 2 0 0 2 2 2 0 C2H2 type zinc-finger zf-RING-like PF08746.11 gi|433593118|ref|YP_007282604.1| - 0.041 14.2 6.4 0.073 13.4 6.4 1.4 1 1 0 1 1 1 0 RING-like domain zf-HIT PF04438.16 gi|433593118|ref|YP_007282604.1| - 0.086 12.7 8.5 0.25 11.2 4.8 2.2 2 0 0 2 2 2 0 HIT zinc finger zf-RING_2 PF13639.6 gi|433593118|ref|YP_007282604.1| - 0.12 12.7 8.4 0.16 12.3 8.4 1.2 1 0 0 1 1 1 0 Ring finger domain zf-CRD PF17979.1 gi|433593118|ref|YP_007282604.1| - 0.13 12.3 5.4 0.16 12.1 5.4 1.1 1 0 0 1 1 1 0 Cysteine rich domain with multizinc binding regions HypA PF01155.19 gi|433593118|ref|YP_007282604.1| - 0.22 11.5 7.8 0.93 9.5 2.4 2.1 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Rubredoxin_2 PF18073.1 gi|433593118|ref|YP_007282604.1| - 0.33 10.7 0.5 0.33 10.7 0.5 3.8 3 1 1 4 4 4 0 Rubredoxin metal binding domain zf-ribbon_3 PF13248.6 gi|433593118|ref|YP_007282604.1| - 1.9 8.0 13.3 5.6 6.5 0.1 3.3 2 1 1 3 3 3 0 zinc-ribbon domain DUF35_N PF12172.8 gi|433593118|ref|YP_007282604.1| - 1.9 8.4 17.0 7.2 6.6 0.3 3.5 2 1 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-B_box PF00643.24 gi|433593118|ref|YP_007282604.1| - 2.9 8.1 16.8 1.1e+02 3.1 17.4 2.5 1 1 1 2 2 2 0 B-box zinc finger zf_UBZ PF18439.1 gi|433593118|ref|YP_007282604.1| - 3.4 7.3 15.7 4.3 7.0 0.3 4.0 2 1 2 4 4 4 0 Ubiquitin-Binding Zinc Finger zinc_ribbon_6 PF14599.6 gi|433593118|ref|YP_007282604.1| - 4.2 7.5 14.8 1 9.5 1.6 3.1 1 1 1 2 2 2 0 Zinc-ribbon Zn-ribbon_8 PF09723.10 gi|433593118|ref|YP_007282604.1| - 5.9 7.1 18.3 38 4.5 12.1 3.4 2 1 0 2 2 2 0 Zinc ribbon domain Sortilin-Vps10 PF15902.5 gi|433593119|ref|YP_007282605.1| - 1.3e-12 47.2 0.5 3.2e-08 32.8 0.0 2.5 1 1 2 3 3 3 3 Sortilin, neurotensin receptor 3, PSII_BNR PF14870.6 gi|433593119|ref|YP_007282605.1| - 2.8e-06 26.8 2.1 0.015 14.6 0.0 3.0 2 1 0 3 3 3 2 Photosynthesis system II assembly factor YCF48 BNR PF02012.20 gi|433593119|ref|YP_007282605.1| - 2.1e-05 23.8 19.4 0.71 10.1 0.2 6.0 5 0 0 5 5 5 4 BNR/Asp-box repeat BNR_2 PF13088.6 gi|433593119|ref|YP_007282605.1| - 0.00085 18.7 2.8 3.7 6.8 0.1 3.9 1 1 0 3 3 3 2 BNR repeat-like domain End_beta_propel PF12217.8 gi|433593119|ref|YP_007282605.1| - 0.083 11.6 0.9 7.5 5.1 0.0 3.4 1 1 4 5 5 5 0 Catalytic beta propeller domain of bacteriophage endosialidase DUF4185 PF13810.6 gi|433593119|ref|YP_007282605.1| - 0.27 10.4 4.0 16 4.6 0.0 3.5 2 2 1 3 3 3 0 Domain of unknown function (DUF4185) PQQ_3 PF13570.6 gi|433593119|ref|YP_007282605.1| - 0.29 11.7 10.9 5.9 7.5 0.2 5.3 5 1 1 6 6 6 0 PQQ-like domain DUF1931 PF09123.11 gi|433593120|ref|YP_007282606.1| - 0.00052 20.1 0.7 0.00055 20.1 0.7 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1931) CBFD_NFYB_HMF PF00808.23 gi|433593120|ref|YP_007282606.1| - 0.0012 19.1 0.0 0.0014 18.9 0.0 1.3 1 1 0 1 1 1 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Glutaredoxin PF00462.24 gi|433593120|ref|YP_007282606.1| - 0.077 13.2 0.2 0.1 12.9 0.2 1.2 1 0 0 1 1 1 0 Glutaredoxin DctP PF03480.13 gi|433593120|ref|YP_007282606.1| - 0.14 11.5 0.0 0.16 11.3 0.0 1.1 1 0 0 1 1 1 0 Bacterial extracellular solute-binding protein, family 7 PadR PF03551.14 gi|433593121|ref|YP_007282607.1| - 4.3e-15 55.4 0.8 5.1e-15 55.2 0.8 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_45 PF14947.6 gi|433593121|ref|YP_007282607.1| - 0.0037 17.2 0.1 0.0055 16.7 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DUF1495 PF07381.11 gi|433593121|ref|YP_007282607.1| - 0.13 12.1 0.0 0.2 11.5 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) DUF2063 PF09836.9 gi|433593122|ref|YP_007282608.1| - 0.058 13.6 0.2 8.4 6.7 0.0 2.7 3 0 0 3 3 3 0 Putative DNA-binding domain RHH_1 PF01402.21 gi|433593123|ref|YP_007282609.1| - 0.036 14.0 0.3 0.063 13.2 0.2 1.4 2 0 0 2 2 2 0 Ribbon-helix-helix protein, copG family DUF4777 PF16007.5 gi|433593123|ref|YP_007282609.1| - 0.13 12.5 0.1 0.15 12.3 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4777) E1-E2_ATPase PF00122.20 gi|433593124|ref|YP_007282610.1| - 1.4e-51 174.6 7.1 6.4e-51 172.4 1.9 2.8 2 1 0 2 2 2 2 E1-E2 ATPase Hydrolase PF00702.26 gi|433593124|ref|YP_007282610.1| - 1.7e-42 146.1 8.4 3.2e-42 145.2 8.4 1.5 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|433593124|ref|YP_007282610.1| - 1.6e-05 24.8 0.1 0.0007 19.4 0.2 2.2 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|433593124|ref|YP_007282610.1| - 5e-05 23.8 0.2 0.00017 22.1 0.2 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Zip PF02535.22 gi|433593124|ref|YP_007282610.1| - 0.019 14.2 7.7 0.0059 15.9 2.2 2.7 2 1 0 2 2 2 0 ZIP Zinc transporter HMA PF00403.26 gi|433593125|ref|YP_007282611.1| - 4.1e-19 68.8 2.0 4.5e-19 68.7 2.0 1.0 1 0 0 1 1 1 1 Heavy-metal-associated domain DUF3592 PF12158.8 gi|433593126|ref|YP_007282612.1| - 0.13 12.3 0.1 0.16 12.0 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3592) MerC PF03203.14 gi|433593127|ref|YP_007282613.1| - 0.19 12.2 5.3 0.25 11.8 5.3 1.2 1 0 0 1 1 1 0 MerC mercury resistance protein Oxidored_q2 PF00420.24 gi|433593127|ref|YP_007282613.1| - 0.26 11.0 0.1 0.26 11.0 0.1 2.6 1 1 1 2 2 2 0 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DUF981 PF06168.11 gi|433593127|ref|YP_007282613.1| - 0.27 11.1 8.7 0.43 10.5 8.7 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF981) MarR_2 PF12802.7 gi|433593128|ref|YP_007282614.1| - 6.9e-10 38.7 0.4 9.8e-10 38.2 0.0 1.5 2 0 0 2 2 1 1 MarR family HTH_24 PF13412.6 gi|433593128|ref|YP_007282614.1| - 3.4e-09 36.1 0.0 5.2e-09 35.5 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|433593128|ref|YP_007282614.1| - 2.2e-08 34.1 0.2 3.5e-08 33.4 0.2 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|433593128|ref|YP_007282614.1| - 1.9e-07 30.8 0.1 3.1e-07 30.1 0.1 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR PF01047.22 gi|433593128|ref|YP_007282614.1| - 1.4e-05 24.9 0.0 2.7e-05 24.0 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_AsnC-type PF13404.6 gi|433593128|ref|YP_007282614.1| - 1.6e-05 24.6 0.3 2.7e-05 23.9 0.3 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|433593128|ref|YP_007282614.1| - 4.1e-05 23.5 0.0 6.1e-05 22.9 0.0 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_11 PF08279.12 gi|433593128|ref|YP_007282614.1| - 6.8e-05 22.7 0.1 0.00016 21.5 0.1 1.6 2 0 0 2 2 2 1 HTH domain Fe_dep_repress PF01325.19 gi|433593128|ref|YP_007282614.1| - 0.00021 21.4 0.0 0.00032 20.8 0.0 1.3 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_5 PF01022.20 gi|433593128|ref|YP_007282614.1| - 0.0003 20.6 0.0 0.00041 20.1 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|433593128|ref|YP_007282614.1| - 0.00084 19.2 0.0 0.0013 18.5 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_23 PF13384.6 gi|433593128|ref|YP_007282614.1| - 0.00089 19.0 0.0 0.0017 18.1 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain Sigma70_r4_2 PF08281.12 gi|433593128|ref|YP_007282614.1| - 0.0013 18.3 0.1 0.0021 17.7 0.1 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 GntR PF00392.21 gi|433593128|ref|YP_007282614.1| - 0.0048 16.5 0.1 0.0081 15.8 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family Sigma70_r4 PF04545.16 gi|433593128|ref|YP_007282614.1| - 0.0052 16.3 0.0 0.0081 15.7 0.0 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 RP-C PF03428.13 gi|433593128|ref|YP_007282614.1| - 0.01 15.5 0.0 0.012 15.2 0.0 1.2 1 0 0 1 1 1 0 Replication protein C N-terminal domain HTH_36 PF13730.6 gi|433593128|ref|YP_007282614.1| - 0.016 15.1 0.0 0.021 14.8 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_DeoR PF08220.12 gi|433593128|ref|YP_007282614.1| - 0.017 14.9 0.1 0.029 14.1 0.1 1.3 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_27 PF13463.6 gi|433593128|ref|YP_007282614.1| - 0.017 15.6 0.1 0.032 14.7 0.1 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain Penicillinase_R PF03965.16 gi|433593128|ref|YP_007282614.1| - 0.031 14.6 0.0 0.044 14.1 0.0 1.3 1 0 0 1 1 1 0 Penicillinase repressor Crp PF00325.20 gi|433593128|ref|YP_007282614.1| - 0.031 13.9 0.2 0.045 13.4 0.2 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, crp family Rrf2 PF02082.20 gi|433593128|ref|YP_007282614.1| - 0.043 14.2 0.0 0.066 13.6 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator DUF2250 PF10007.9 gi|433593128|ref|YP_007282614.1| - 0.079 13.1 0.0 0.18 11.9 0.0 1.6 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_3 PF01381.22 gi|433593128|ref|YP_007282614.1| - 0.1 12.7 0.0 0.26 11.4 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix HTH_28 PF13518.6 gi|433593128|ref|YP_007282614.1| - 0.11 12.6 0.0 0.18 11.9 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain Phage_rep_O PF04492.13 gi|433593128|ref|YP_007282614.1| - 0.13 12.8 0.0 0.18 12.4 0.0 1.4 1 0 0 1 1 1 0 Bacteriophage replication protein O DoxX PF07681.12 gi|433593129|ref|YP_007282615.1| - 7e-11 42.6 12.1 7e-11 42.6 12.1 1.8 1 1 0 2 2 2 1 DoxX AIRS PF00586.24 gi|433593129|ref|YP_007282615.1| - 1.1 10.0 3.4 2 9.1 1.7 2.4 1 1 1 2 2 2 0 AIR synthase related protein, N-terminal domain SHOCT PF09851.9 gi|433593130|ref|YP_007282616.1| - 1.1e-10 40.9 1.3 1.5e-10 40.4 1.3 1.2 1 0 0 1 1 1 1 Short C-terminal domain DUF1707 PF08044.11 gi|433593130|ref|YP_007282616.1| - 0.00026 21.0 1.4 0.00053 20.0 1.4 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1707) GvpG PF05120.12 gi|433593130|ref|YP_007282616.1| - 0.0012 18.8 0.0 0.0018 18.2 0.0 1.3 1 0 0 1 1 1 1 Gas vesicle protein G VbhA PF18495.1 gi|433593130|ref|YP_007282616.1| - 0.033 14.1 2.1 0.033 14.1 2.1 1.8 2 0 0 2 2 2 0 Antitoxin VbhA Usp PF00582.26 gi|433593131|ref|YP_007282617.1| - 2.3e-29 102.7 2.9 2.6e-29 102.6 2.9 1.0 1 0 0 1 1 1 1 Universal stress protein family DNA_photolyase PF00875.18 gi|433593131|ref|YP_007282617.1| - 0.02 14.9 0.3 0.044 13.8 0.3 1.5 1 1 0 1 1 1 0 DNA photolyase ArsP_1 PF03773.13 gi|433593132|ref|YP_007282618.1| - 2.5e-58 197.6 11.7 3.3e-58 197.2 11.7 1.2 1 0 0 1 1 1 1 Predicted permease YHS PF04945.13 gi|433593132|ref|YP_007282618.1| - 5.2e-20 71.3 9.2 9e-15 54.5 3.7 2.3 2 0 0 2 2 2 2 YHS domain zf-FCS PF06467.14 gi|433593132|ref|YP_007282618.1| - 0.00019 21.3 6.3 0.031 14.2 0.8 2.4 2 0 0 2 2 2 2 MYM-type Zinc finger with FCS sequence motif Arc_trans_TRASH PF08394.10 gi|433593132|ref|YP_007282618.1| - 0.081 13.3 0.2 0.081 13.3 0.2 1.9 2 0 0 2 2 2 0 Archaeal TRASH domain zf-HIT PF04438.16 gi|433593132|ref|YP_007282618.1| - 0.22 11.4 1.1 0.53 10.2 0.2 2.0 2 0 0 2 2 2 0 HIT zinc finger DUF2256 PF10013.9 gi|433593132|ref|YP_007282618.1| - 7.5 6.8 6.0 86 3.4 0.0 3.3 3 0 0 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2256) SHOCT PF09851.9 gi|433593133|ref|YP_007282619.1| - 4.2e-07 29.5 7.5 5.5e-07 29.1 7.5 1.2 1 0 0 1 1 1 1 Short C-terminal domain DUF1707 PF08044.11 gi|433593133|ref|YP_007282619.1| - 8e-05 22.6 4.0 0.00014 21.9 4.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1707) CdvA PF18822.1 gi|433593133|ref|YP_007282619.1| - 0.054 13.3 0.1 0.065 13.1 0.1 1.1 1 0 0 1 1 1 0 CdvA-like coiled-coil domain DMAP_binding PF06464.11 gi|433593133|ref|YP_007282619.1| - 0.12 13.2 0.5 0.14 12.9 0.5 1.1 1 0 0 1 1 1 0 DMAP1-binding Domain DUF3007 PF11460.8 gi|433593133|ref|YP_007282619.1| - 0.83 9.9 4.5 15 5.9 2.0 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3007) Halogen_Hydrol PF10112.9 gi|433593133|ref|YP_007282619.1| - 1.1 9.2 4.9 36 4.3 4.9 2.0 1 1 0 1 1 1 0 5-bromo-4-chloroindolyl phosphate hydrolysis protein Apq12 PF12716.7 gi|433593133|ref|YP_007282619.1| - 3.7 7.6 10.1 0.14 12.1 1.8 2.1 2 0 0 2 2 2 0 Nuclear pore assembly and biogenesis Na_Pi_cotrans PF02690.15 gi|433593134|ref|YP_007282620.1| - 0.0087 16.2 0.1 0.069 13.3 0.2 2.0 2 0 0 2 2 2 1 Na+/Pi-cotransporter DUF981 PF06168.11 gi|433593134|ref|YP_007282620.1| - 0.26 11.2 11.0 0.045 13.7 4.7 2.5 1 1 0 2 2 2 0 Protein of unknown function (DUF981) YrhK PF14145.6 gi|433593134|ref|YP_007282620.1| - 0.88 9.5 6.0 14 5.7 0.2 3.1 2 1 1 3 3 3 0 YrhK-like protein HTH_20 PF12840.7 gi|433593135|ref|YP_007282621.1| - 2.4e-15 56.3 0.6 4.9e-15 55.3 0.6 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain Type2_restr_D3 PF16902.5 gi|433593135|ref|YP_007282621.1| - 5.1e-05 23.1 0.1 0.00013 21.8 0.1 1.6 1 0 0 1 1 1 1 Type-2 restriction enzyme D3 domain HTH_5 PF01022.20 gi|433593135|ref|YP_007282621.1| - 0.00019 21.2 0.1 0.02 14.8 0.0 2.5 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_12 PF08461.10 gi|433593135|ref|YP_007282621.1| - 0.00034 20.5 0.1 0.00065 19.6 0.1 1.5 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain TFIIE_alpha PF02002.17 gi|433593135|ref|YP_007282621.1| - 0.00043 20.1 0.0 0.00097 19.0 0.0 1.7 1 1 0 1 1 1 1 TFIIE alpha subunit Cdc6_C PF09079.11 gi|433593135|ref|YP_007282621.1| - 0.0053 16.7 0.1 0.015 15.2 0.1 1.8 1 1 0 1 1 1 1 CDC6, C terminal winged helix domain PadR PF03551.14 gi|433593135|ref|YP_007282621.1| - 0.0093 15.9 0.1 0.017 15.1 0.1 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family FUR PF01475.19 gi|433593135|ref|YP_007282621.1| - 0.017 15.2 0.1 0.03 14.5 0.1 1.5 1 1 0 1 1 1 0 Ferric uptake regulator family TrmB PF01978.19 gi|433593135|ref|YP_007282621.1| - 0.042 13.7 0.5 0.17 11.8 0.0 2.2 3 0 0 3 3 3 0 Sugar-specific transcriptional regulator TrmB DsbB PF02600.16 gi|433593135|ref|YP_007282621.1| - 0.13 12.7 0.1 0.18 12.3 0.1 1.1 1 0 0 1 1 1 0 Disulfide bond formation protein DsbB HMA PF00403.26 gi|433593136|ref|YP_007282622.1| - 2.2e-13 50.5 0.0 2.3e-13 50.3 0.0 1.0 1 0 0 1 1 1 1 Heavy-metal-associated domain DUF276 PF03434.13 gi|433593136|ref|YP_007282622.1| - 0.015 14.4 0.0 0.015 14.4 0.0 1.0 1 0 0 1 1 1 0 DUF276 Peptidase_S8_N PF16361.5 gi|433593136|ref|YP_007282622.1| - 0.065 13.7 0.0 0.07 13.6 0.0 1.1 1 0 0 1 1 1 0 N-terminal of Subtilase family Nse4_C PF08743.10 gi|433593136|ref|YP_007282622.1| - 0.13 12.5 0.0 0.31 11.3 0.0 1.6 2 0 0 2 2 2 0 Nse4 C-terminal E1-E2_ATPase PF00122.20 gi|433593137|ref|YP_007282623.1| - 1.2e-47 161.7 0.9 1.2e-47 161.7 0.9 2.4 3 0 0 3 3 3 1 E1-E2 ATPase Hydrolase PF00702.26 gi|433593137|ref|YP_007282623.1| - 5.3e-37 128.1 9.9 1e-36 127.3 9.9 1.5 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|433593137|ref|YP_007282623.1| - 0.0017 18.1 2.1 0.011 15.5 1.5 2.1 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|433593137|ref|YP_007282623.1| - 0.0023 18.4 0.3 0.0097 16.3 0.3 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase FmdE PF02663.14 gi|433593138|ref|YP_007282624.1| - 9.1e-06 25.8 0.0 3.4e-05 23.9 0.0 1.8 1 1 0 1 1 1 1 FmdE, Molybdenum formylmethanofuran dehydrogenase operon Phage_int_SAM_5 PF13102.6 gi|433593139|ref|YP_007282625.1| - 2.4e-06 27.8 0.0 6.2e-06 26.5 0.0 1.7 1 1 0 1 1 1 1 Phage integrase SAM-like domain Phage_integrase PF00589.22 gi|433593139|ref|YP_007282625.1| - 0.0012 18.6 0.0 0.014 15.2 0.0 2.3 1 1 0 1 1 1 1 Phage integrase family Phage_int_SAM_1 PF02899.17 gi|433593139|ref|YP_007282625.1| - 0.0014 18.9 0.0 0.13 12.6 0.0 3.1 3 0 0 3 3 3 1 Phage integrase, N-terminal SAM-like domain RHH_6 PF16762.5 gi|433593139|ref|YP_007282625.1| - 0.0087 16.7 0.0 2 9.1 0.0 2.7 2 0 0 2 2 2 1 Ribbon-helix-helix domain Phage_int_SAM_4 PF13495.6 gi|433593139|ref|YP_007282625.1| - 0.13 12.7 0.0 0.29 11.6 0.0 1.5 1 0 0 1 1 1 0 Phage integrase, N-terminal SAM-like domain FUSC PF04632.12 gi|433593139|ref|YP_007282625.1| - 0.18 10.3 1.8 0.34 9.4 1.8 1.3 1 0 0 1 1 1 0 Fusaric acid resistance protein family UL2 PF08196.11 gi|433593140|ref|YP_007282626.1| - 0.21 11.6 0.4 0.29 11.1 0.4 1.3 1 0 0 1 1 1 0 UL2 protein DDE_Tnp_1 PF01609.21 gi|433593141|ref|YP_007282627.1| - 3.7e-08 33.3 0.6 7e-08 32.4 0.6 1.4 1 0 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.11 gi|433593141|ref|YP_007282627.1| - 0.00016 21.6 0.1 0.0011 19.0 0.0 2.5 2 0 0 2 2 2 1 Transposase domain (DUF772) PHO4 PF01384.20 gi|433593142|ref|YP_007282628.1| - 4.4e-42 144.3 37.3 2.3e-41 141.9 35.5 2.4 1 1 0 1 1 1 1 Phosphate transporter family Usp PF00582.26 gi|433593143|ref|YP_007282629.1| - 1.5e-11 44.9 1.2 1.8e-11 44.7 1.2 1.0 1 0 0 1 1 1 1 Universal stress protein family HK97-gp10_like PF04883.12 gi|433593143|ref|YP_007282629.1| - 0.037 15.0 0.2 0.054 14.5 0.2 1.3 1 0 0 1 1 1 0 Bacteriophage HK97-gp10, putative tail-component TRM PF02005.16 gi|433593143|ref|YP_007282629.1| - 0.2 10.8 0.0 0.28 10.3 0.0 1.1 1 0 0 1 1 1 0 N2,N2-dimethylguanosine tRNA methyltransferase AAA_31 PF13614.6 gi|433593145|ref|YP_007282631.1| - 1.2e-28 100.2 0.0 1.8e-28 99.7 0.0 1.1 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|433593145|ref|YP_007282631.1| - 8.4e-11 42.0 0.0 1.7e-10 41.1 0.0 1.5 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|433593145|ref|YP_007282631.1| - 2.8e-08 33.5 0.2 1.8e-07 30.8 0.1 1.9 2 0 0 2 2 2 1 NUBPL iron-transfer P-loop NTPase MipZ PF09140.11 gi|433593145|ref|YP_007282631.1| - 7.7e-07 28.7 0.3 4.2e-05 23.0 0.3 2.9 1 1 0 1 1 1 1 ATPase MipZ CBP_BcsQ PF06564.12 gi|433593145|ref|YP_007282631.1| - 1.1e-06 28.3 0.0 2e-06 27.5 0.0 1.3 1 0 0 1 1 1 1 Cellulose biosynthesis protein BcsQ ArsA_ATPase PF02374.15 gi|433593145|ref|YP_007282631.1| - 0.00019 20.7 0.0 0.0019 17.4 0.0 2.3 3 0 0 3 3 3 1 Anion-transporting ATPase VirC1 PF07015.11 gi|433593145|ref|YP_007282631.1| - 0.0026 17.1 0.0 0.79 9.0 0.0 2.2 2 0 0 2 2 2 2 VirC1 protein Fer4_NifH PF00142.18 gi|433593145|ref|YP_007282631.1| - 0.0089 15.5 0.0 0.29 10.5 0.0 2.3 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family APS_kinase PF01583.20 gi|433593145|ref|YP_007282631.1| - 0.011 15.6 0.1 0.026 14.4 0.1 1.5 1 0 0 1 1 1 0 Adenylylsulphate kinase CLP1_P PF16575.5 gi|433593145|ref|YP_007282631.1| - 0.012 15.5 0.1 0.032 14.0 0.0 1.7 2 0 0 2 2 2 0 mRNA cleavage and polyadenylation factor CLP1 P-loop Glyco_transf_4 PF13439.6 gi|433593145|ref|YP_007282631.1| - 0.088 12.8 0.0 2.1 8.3 0.0 2.1 2 0 0 2 2 2 0 Glycosyltransferase Family 4 SRP54 PF00448.22 gi|433593145|ref|YP_007282631.1| - 0.14 11.8 0.1 4.4 6.9 0.0 2.2 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain SHOCT PF09851.9 gi|433593146|ref|YP_007282632.1| - 3.1e-09 36.3 2.7 4.3e-09 35.8 2.7 1.2 1 0 0 1 1 1 1 Short C-terminal domain DUF1707 PF08044.11 gi|433593146|ref|YP_007282632.1| - 3.1e-06 27.2 1.9 4.5e-06 26.6 1.9 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1707) Phage_holin_3_6 PF07332.11 gi|433593146|ref|YP_007282632.1| - 0.0084 16.1 5.9 0.011 15.8 5.9 1.2 1 0 0 1 1 1 1 Putative Actinobacterial Holin-X, holin superfamily III DUF4131 PF13567.6 gi|433593146|ref|YP_007282632.1| - 0.021 14.5 0.1 0.027 14.1 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) DUF2244 PF10003.9 gi|433593146|ref|YP_007282632.1| - 0.031 13.9 5.3 0.34 10.6 0.0 2.1 2 0 0 2 2 2 0 Integral membrane protein (DUF2244) DUF4381 PF14316.6 gi|433593146|ref|YP_007282632.1| - 0.085 13.1 0.2 0.085 13.1 0.2 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4381) CBP_BcsF PF11120.8 gi|433593146|ref|YP_007282632.1| - 0.19 11.9 0.2 0.19 11.9 0.2 2.1 2 0 0 2 2 2 0 Cellulose biosynthesis protein BcsF Promethin PF16015.5 gi|433593146|ref|YP_007282632.1| - 0.41 10.6 9.9 1.3 8.9 4.9 2.1 2 0 0 2 2 2 0 Promethin Ion_trans_2 PF07885.16 gi|433593147|ref|YP_007282633.1| - 4.4e-05 23.4 14.0 4.4e-05 23.4 14.0 2.2 2 1 0 2 2 2 1 Ion channel E1-E2_ATPase PF00122.20 gi|433593148|ref|YP_007282634.1| - 1.4e-50 171.3 2.5 1.4e-50 171.3 2.5 2.9 3 1 0 3 3 3 2 E1-E2 ATPase Hydrolase PF00702.26 gi|433593148|ref|YP_007282634.1| - 2.9e-44 151.9 6.5 4.6e-44 151.2 6.5 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|433593148|ref|YP_007282634.1| - 6e-06 26.2 0.2 0.00012 22.0 0.3 2.3 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|433593148|ref|YP_007282634.1| - 8e-05 23.1 0.9 0.00018 21.9 0.1 2.0 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|433593148|ref|YP_007282634.1| - 0.14 12.2 0.1 0.58 10.2 0.1 2.0 2 1 0 2 2 2 0 Haloacid dehalogenase-like hydrolase DNA_photolyase PF00875.18 gi|433593148|ref|YP_007282634.1| - 0.17 11.9 0.0 0.45 10.5 0.0 1.7 1 0 0 1 1 1 0 DNA photolyase adh_short PF00106.25 gi|433593149|ref|YP_007282635.1| - 8.8e-45 152.6 0.0 1.2e-44 152.1 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|433593149|ref|YP_007282635.1| - 1e-30 107.0 0.0 1.3e-30 106.7 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 gi|433593149|ref|YP_007282635.1| - 4.9e-16 59.2 0.1 6.8e-16 58.7 0.1 1.1 1 0 0 1 1 1 1 KR domain VKOR PF07884.14 gi|433593150|ref|YP_007282636.1| - 7.7e-15 55.2 7.0 7.7e-15 55.2 7.0 3.4 3 1 0 3 3 3 1 Vitamin K epoxide reductase family SPW PF03779.14 gi|433593150|ref|YP_007282636.1| - 6.3e-07 28.9 48.5 0.00035 20.1 1.6 5.4 5 0 0 5 5 5 4 SPW repeat Glyco_hydro_15 PF00723.21 gi|433593151|ref|YP_007282637.1| - 9.4e-50 169.7 0.0 1.9e-44 152.2 0.0 2.1 1 1 1 2 2 2 2 Glycosyl hydrolases family 15 TPR_2 PF07719.17 gi|433593151|ref|YP_007282637.1| - 0.012 15.7 0.1 8.4 6.8 0.0 3.0 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_14 PF13428.6 gi|433593151|ref|YP_007282637.1| - 0.023 15.5 0.2 2.8 9.0 0.0 2.9 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_12 PF13424.6 gi|433593151|ref|YP_007282637.1| - 0.025 14.8 0.0 4.2 7.7 0.0 2.6 2 0 0 2 2 2 0 Tetratricopeptide repeat DUF4129 PF13559.6 gi|433593151|ref|YP_007282637.1| - 0.05 13.9 0.0 0.15 12.3 0.0 1.9 1 0 0 1 1 1 0 Domain of unknown function (DUF4129) TPR_8 PF13181.6 gi|433593151|ref|YP_007282637.1| - 0.078 13.2 0.0 25 5.4 0.0 3.0 3 0 0 3 3 3 0 Tetratricopeptide repeat TPR_1 PF00515.28 gi|433593151|ref|YP_007282637.1| - 0.94 9.4 2.4 6.4 6.8 0.0 3.1 5 0 0 5 5 5 0 Tetratricopeptide repeat SPW PF03779.14 gi|433593152|ref|YP_007282638.1| - 2.2e-07 30.3 14.0 0.0016 17.9 2.0 2.6 2 1 0 2 2 2 2 SPW repeat DUF998 PF06197.13 gi|433593152|ref|YP_007282638.1| - 0.0092 15.6 3.7 0.0092 15.6 3.7 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF998) Sarcolipin PF05366.11 gi|433593152|ref|YP_007282638.1| - 0.072 12.8 1.9 0.57 9.9 0.4 2.5 2 0 0 2 2 2 0 Sarcolipin MHYT PF03707.16 gi|433593152|ref|YP_007282638.1| - 0.08 13.1 2.0 5.9 7.1 0.1 2.7 2 1 1 3 3 3 0 Bacterial signalling protein N terminal repeat DUF308 PF03729.13 gi|433593152|ref|YP_007282638.1| - 0.083 13.2 8.0 2 8.8 1.2 2.4 2 0 0 2 2 2 0 Short repeat of unknown function (DUF308) DUF1304 PF06993.12 gi|433593152|ref|YP_007282638.1| - 0.18 11.8 2.9 0.23 11.5 0.8 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1304) TraQ PF09679.10 gi|433593152|ref|YP_007282638.1| - 3.6 7.6 9.2 2.5 8.1 1.5 2.1 1 1 1 2 2 2 0 Type-F conjugative transfer system pilin chaperone (TraQ) DUF326 PF03860.16 gi|433593153|ref|YP_007282639.1| - 1.5e-07 31.2 53.7 0.00043 20.1 9.6 4.9 4 1 1 5 5 5 4 Domain of Unknown Function (DUF326) TssN PF17555.2 gi|433593154|ref|YP_007282640.1| - 0.47 9.8 4.0 0.56 9.6 4.0 1.0 1 0 0 1 1 1 0 Type VI secretion system, TssN DUF2070 PF09843.9 gi|433593154|ref|YP_007282640.1| - 0.77 8.0 5.5 0.92 7.7 5.5 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) Mrr_N PF14338.6 gi|433593155|ref|YP_007282641.1| - 0.045 13.9 0.1 0.095 12.8 0.1 1.5 1 0 0 1 1 1 0 Mrr N-terminal domain HTH_12 PF08461.10 gi|433593155|ref|YP_007282641.1| - 0.06 13.3 0.2 0.093 12.7 0.2 1.3 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain DUF505 PF04458.12 gi|433593155|ref|YP_007282641.1| - 0.066 11.6 0.0 0.081 11.3 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF505) MarR_2 PF12802.7 gi|433593155|ref|YP_007282641.1| - 0.07 13.0 0.0 0.13 12.2 0.0 1.4 1 0 0 1 1 1 0 MarR family DUF3267 PF11667.8 gi|433593155|ref|YP_007282641.1| - 0.12 12.7 1.3 0.2 12.0 1.3 1.3 1 0 0 1 1 1 0 Putative zincin peptidase Rio2_N PF09202.11 gi|433593155|ref|YP_007282641.1| - 0.12 12.6 0.0 0.21 11.9 0.0 1.3 1 0 0 1 1 1 0 Rio2, N-terminal Replic_Relax PF13814.6 gi|433593155|ref|YP_007282641.1| - 0.17 11.9 0.0 0.24 11.4 0.0 1.2 1 0 0 1 1 1 0 Replication-relaxation z-alpha PF02295.17 gi|433593155|ref|YP_007282641.1| - 0.2 11.7 0.0 0.34 11.0 0.0 1.3 1 0 0 1 1 1 0 Adenosine deaminase z-alpha domain HpaB PF03241.13 gi|433593157|ref|YP_007282643.1| - 0.12 11.4 0.1 0.12 11.4 0.1 1.0 1 0 0 1 1 1 0 4-hydroxyphenylacetate 3-hydroxylase C terminal S_4TM PF18159.1 gi|433593157|ref|YP_007282643.1| - 0.47 9.7 5.5 0.52 9.6 5.5 1.0 1 0 0 1 1 1 0 SMODS-associating 4TM effector domain Phage_integrase PF00589.22 gi|433593158|ref|YP_007282644.1| - 6.6e-16 58.6 0.0 4.5e-15 55.9 0.0 2.2 1 1 0 1 1 1 1 Phage integrase family Phage_int_SAM_1 PF02899.17 gi|433593158|ref|YP_007282644.1| - 2.3e-09 37.4 0.2 5.4e-09 36.2 0.2 1.6 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.6 gi|433593158|ref|YP_007282644.1| - 4e-05 24.0 0.1 8.4e-05 23.0 0.1 1.5 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain HTH_23 PF13384.6 gi|433593159|ref|YP_007282645.1| - 3.6e-05 23.4 0.1 0.00013 21.7 0.0 1.9 2 0 0 2 2 2 1 Homeodomain-like domain HTH_28 PF13518.6 gi|433593159|ref|YP_007282645.1| - 0.00019 21.5 0.4 0.0005 20.1 0.0 1.9 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_1 PF00126.27 gi|433593159|ref|YP_007282645.1| - 0.0006 19.7 0.3 0.0016 18.4 0.1 1.8 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix protein, lysR family MarR_2 PF12802.7 gi|433593159|ref|YP_007282645.1| - 0.0012 18.7 0.1 0.0023 17.8 0.1 1.5 1 1 0 1 1 1 1 MarR family Fe_dep_repress PF01325.19 gi|433593159|ref|YP_007282645.1| - 0.0018 18.4 0.0 0.0094 16.1 0.0 2.0 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain Rrf2 PF02082.20 gi|433593159|ref|YP_007282645.1| - 0.0045 17.3 0.0 0.061 13.7 0.0 2.4 3 0 0 3 3 3 1 Transcriptional regulator TrmB PF01978.19 gi|433593159|ref|YP_007282645.1| - 0.0082 16.0 0.0 0.015 15.2 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.6 gi|433593159|ref|YP_007282645.1| - 0.0093 15.9 0.0 0.02 14.8 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_30 PF13556.6 gi|433593159|ref|YP_007282645.1| - 0.012 15.4 0.0 0.026 14.3 0.0 1.5 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain GntR PF00392.21 gi|433593159|ref|YP_007282645.1| - 0.013 15.2 0.0 0.034 13.8 0.0 1.7 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family HTH_24 PF13412.6 gi|433593159|ref|YP_007282645.1| - 0.014 14.9 0.0 0.027 14.0 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding DUF883 PF05957.13 gi|433593159|ref|YP_007282645.1| - 0.025 15.2 0.5 0.046 14.3 0.5 1.3 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF883) RPA_C PF08784.11 gi|433593159|ref|YP_007282645.1| - 0.051 14.2 0.0 0.089 13.5 0.0 1.3 1 0 0 1 1 1 0 Replication protein A C terminal DUF2250 PF10007.9 gi|433593159|ref|YP_007282645.1| - 0.09 12.9 0.0 0.16 12.1 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_Tnp_ISL3 PF13542.6 gi|433593159|ref|YP_007282645.1| - 0.1 12.0 0.1 0.35 10.3 0.1 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 LPD11 PF18824.1 gi|433593159|ref|YP_007282645.1| - 0.43 10.7 2.1 12 6.0 0.5 2.3 1 1 1 2 2 2 0 Large polyvalent protein-associated domain 11 NTP_transf_5 PF14907.6 gi|433593160|ref|YP_007282646.1| - 5.3e-08 32.8 0.1 7.1e-08 32.4 0.1 1.2 1 0 0 1 1 1 1 Uncharacterised nucleotidyltransferase AbiEii PF08843.11 gi|433593160|ref|YP_007282646.1| - 0.0009 19.3 0.1 0.0068 16.4 0.0 2.0 2 0 0 2 2 2 1 Nucleotidyl transferase AbiEii toxin, Type IV TA system Propep_M14 PF02244.16 gi|433593160|ref|YP_007282646.1| - 0.01 16.2 0.0 0.031 14.7 0.0 1.9 1 0 0 1 1 1 0 Carboxypeptidase activation peptide GrpB PF04229.14 gi|433593160|ref|YP_007282646.1| - 0.021 15.0 0.0 0.035 14.3 0.0 1.4 1 0 0 1 1 1 0 GrpB protein TRAM PF01938.20 gi|433593162|ref|YP_007282648.1| - 3.9e-16 58.8 2.4 3.9e-16 58.8 2.4 1.5 2 0 0 2 2 2 1 TRAM domain UvrD-helicase PF00580.21 gi|433593163|ref|YP_007282649.1| - 1.3e-51 176.0 0.1 4.6e-51 174.2 0.0 1.9 2 0 0 2 2 2 1 UvrD/REP helicase N-terminal domain UvrD_C PF13361.6 gi|433593163|ref|YP_007282649.1| - 2.7e-30 106.0 0.0 1.5e-17 64.0 0.0 2.2 1 1 1 2 2 2 2 UvrD-like helicase C-terminal domain AAA_19 PF13245.6 gi|433593163|ref|YP_007282649.1| - 1.9e-27 96.4 0.0 8.5e-27 94.3 0.0 2.1 1 1 0 1 1 1 1 AAA domain UvrD_C_2 PF13538.6 gi|433593163|ref|YP_007282649.1| - 2.2e-10 40.2 0.2 6.6e-05 22.7 0.1 2.8 2 0 0 2 2 2 2 UvrD-like helicase C-terminal domain PDDEXK_1 PF12705.7 gi|433593163|ref|YP_007282649.1| - 7e-09 36.0 1.6 1.7e-07 31.5 1.0 2.9 2 1 1 3 3 3 1 PD-(D/E)XK nuclease superfamily AAA_30 PF13604.6 gi|433593163|ref|YP_007282649.1| - 2.8e-07 30.5 0.0 2.1e-06 27.6 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_12 PF13087.6 gi|433593163|ref|YP_007282649.1| - 0.0002 21.0 0.0 0.043 13.4 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_11 PF13086.6 gi|433593163|ref|YP_007282649.1| - 0.00032 20.6 0.0 0.022 14.6 0.0 2.3 2 0 0 2 2 2 1 AAA domain DUF2075 PF09848.9 gi|433593163|ref|YP_007282649.1| - 0.096 11.9 0.0 11 5.1 0.1 2.2 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) PhoH PF02562.16 gi|433593163|ref|YP_007282649.1| - 0.11 11.9 0.0 6.3 6.2 0.0 2.3 2 0 0 2 2 2 0 PhoH-like protein PDDEXK_1 PF12705.7 gi|433593164|ref|YP_007282650.1| - 2.6e-14 53.8 0.5 6.3e-14 52.5 0.1 1.9 2 0 0 2 2 2 1 PD-(D/E)XK nuclease superfamily UvrD_C PF13361.6 gi|433593164|ref|YP_007282650.1| - 0.009 15.4 0.0 0.017 14.5 0.0 1.6 1 1 0 1 1 1 1 UvrD-like helicase C-terminal domain N6_Mtase PF02384.16 gi|433593167|ref|YP_007282653.1| - 3.5e-11 42.9 0.0 1.2e-10 41.2 0.0 1.8 1 1 0 1 1 1 1 N-6 DNA Methylase TaqI_C PF12950.7 gi|433593167|ref|YP_007282653.1| - 4.1e-05 23.6 0.0 0.00012 22.2 0.0 1.8 1 0 0 1 1 1 1 TaqI-like C-terminal specificity domain Eco57I PF07669.11 gi|433593167|ref|YP_007282653.1| - 0.0016 18.9 0.0 0.0048 17.4 0.0 1.8 1 0 0 1 1 1 1 Eco57I restriction-modification methylase UPF0020 PF01170.18 gi|433593167|ref|YP_007282653.1| - 0.0041 16.8 0.0 0.011 15.4 0.0 1.7 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 MTS PF05175.14 gi|433593167|ref|YP_007282653.1| - 0.0042 16.6 0.0 3.8 7.0 0.0 3.3 3 0 0 3 3 3 1 Methyltransferase small domain DUF35_N PF12172.8 gi|433593167|ref|YP_007282653.1| - 0.057 13.3 0.4 0.15 12.0 0.4 1.6 1 0 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) DDE_Tnp_1 PF01609.21 gi|433593169|ref|YP_007282655.1| - 3.2e-10 40.0 3.3 4.9e-10 39.4 3.3 1.2 1 0 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.11 gi|433593169|ref|YP_007282655.1| - 0.17 11.9 0.5 0.48 10.5 0.3 1.9 2 0 0 2 2 2 0 Transposase domain (DUF772) AAA_22 PF13401.6 gi|433593170|ref|YP_007282656.1| - 1e-09 38.8 0.0 1.2e-08 35.3 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|433593170|ref|YP_007282656.1| - 1.6e-09 38.4 2.7 1.8e-08 34.9 0.2 2.9 1 1 0 2 2 2 1 AAA ATPase domain AAA_assoc_2 PF16193.5 gi|433593170|ref|YP_007282656.1| - 4.8e-07 30.0 3.9 0.00067 19.9 1.2 2.6 2 0 0 2 2 2 2 AAA C-terminal domain AAA_18 PF13238.6 gi|433593170|ref|YP_007282656.1| - 1.3e-05 25.8 0.0 7.7e-05 23.2 0.0 2.2 1 1 2 3 3 3 1 AAA domain Penicillinase_R PF03965.16 gi|433593170|ref|YP_007282656.1| - 3.6e-05 24.1 0.0 8.3e-05 22.9 0.0 1.6 1 0 0 1 1 1 1 Penicillinase repressor AAA_5 PF07728.14 gi|433593170|ref|YP_007282656.1| - 0.00015 21.7 0.0 0.00065 19.7 0.0 2.1 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) NTPase_1 PF03266.15 gi|433593170|ref|YP_007282656.1| - 0.0004 20.4 0.5 0.012 15.5 0.0 2.8 2 1 1 3 3 3 1 NTPase AAA PF00004.29 gi|433593170|ref|YP_007282656.1| - 0.00087 19.7 0.0 0.012 16.1 0.0 2.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.6 gi|433593170|ref|YP_007282656.1| - 0.0053 16.9 0.4 0.53 10.4 0.0 3.0 2 2 1 3 3 3 1 AAA domain AAA_14 PF13173.6 gi|433593170|ref|YP_007282656.1| - 0.0069 16.4 0.0 0.017 15.2 0.0 1.7 1 1 0 1 1 1 1 AAA domain DUF4194 PF13835.6 gi|433593170|ref|YP_007282656.1| - 0.0094 15.7 0.0 0.022 14.5 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4194) Cdc6_C PF09079.11 gi|433593170|ref|YP_007282656.1| - 0.012 15.6 0.3 0.044 13.8 0.2 2.0 2 1 0 2 2 1 0 CDC6, C terminal winged helix domain NB-ARC PF00931.22 gi|433593170|ref|YP_007282656.1| - 0.014 14.6 0.0 0.03 13.5 0.0 1.6 2 0 0 2 2 2 0 NB-ARC domain ATPase_2 PF01637.18 gi|433593170|ref|YP_007282656.1| - 0.015 15.2 0.0 0.11 12.4 0.0 2.1 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea DUF2075 PF09848.9 gi|433593170|ref|YP_007282656.1| - 0.016 14.5 0.0 0.023 14.0 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) RNA_helicase PF00910.22 gi|433593170|ref|YP_007282656.1| - 0.019 15.3 0.0 0.056 13.8 0.0 1.8 1 1 1 2 2 1 0 RNA helicase PRK PF00485.18 gi|433593170|ref|YP_007282656.1| - 0.02 14.7 0.0 0.038 13.7 0.0 1.5 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family NACHT PF05729.12 gi|433593170|ref|YP_007282656.1| - 0.045 13.7 0.1 0.1 12.5 0.0 1.6 2 0 0 2 2 2 0 NACHT domain DUF2791 PF10923.8 gi|433593170|ref|YP_007282656.1| - 0.048 12.5 0.0 0.084 11.7 0.0 1.3 1 0 0 1 1 1 0 P-loop Domain of unknown function (DUF2791) AAA_30 PF13604.6 gi|433593170|ref|YP_007282656.1| - 0.08 12.7 0.7 0.29 10.8 0.0 2.2 2 1 0 2 2 2 0 AAA domain RuvB_N PF05496.12 gi|433593170|ref|YP_007282656.1| - 0.093 12.5 0.0 0.26 11.0 0.0 1.9 1 1 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain RsgA_GTPase PF03193.16 gi|433593170|ref|YP_007282656.1| - 0.11 12.4 0.0 0.23 11.4 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase SRAP PF02586.14 gi|433593171|ref|YP_007282657.1| - 8.1e-63 211.9 0.0 9.2e-63 211.7 0.0 1.0 1 0 0 1 1 1 1 SOS response associated peptidase (SRAP) VP9 PF09625.10 gi|433593172|ref|YP_007282658.1| - 0.01 16.0 0.2 0.033 14.3 0.0 1.9 2 0 0 2 2 2 0 VP9 protein BET PF17035.5 gi|433593172|ref|YP_007282658.1| - 0.017 15.3 0.6 0.071 13.3 0.1 2.2 2 0 0 2 2 2 0 Bromodomain extra-terminal - transcription regulation Phage_holin_6_1 PF09682.10 gi|433593172|ref|YP_007282658.1| - 0.069 13.6 0.3 0.14 12.6 0.3 1.4 1 0 0 1 1 1 0 Bacteriophage holin of superfamily 6 (Holin_LLH) MutL_C PF08676.11 gi|433593175|ref|YP_007282661.1| - 0.061 13.1 0.1 0.076 12.8 0.1 1.1 1 0 0 1 1 1 0 MutL C terminal dimerisation domain CorA PF01544.18 gi|433593175|ref|YP_007282661.1| - 0.09 12.1 0.8 0.1 11.9 0.8 1.0 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein PSK_trans_fac PF07704.11 gi|433593175|ref|YP_007282661.1| - 0.88 10.4 7.7 0.25 12.1 1.3 2.0 1 1 0 2 2 2 0 Rv0623-like transcription factor Cdc6_C PF09079.11 gi|433593176|ref|YP_007282662.1| - 4e-18 65.2 0.0 8.8e-18 64.1 0.0 1.5 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain AAA_22 PF13401.6 gi|433593176|ref|YP_007282662.1| - 1.4e-11 44.8 0.1 4.7e-11 43.1 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|433593176|ref|YP_007282662.1| - 1.4e-09 38.6 1.9 3.7e-09 37.2 0.2 2.4 2 1 0 2 2 2 1 AAA ATPase domain AAA PF00004.29 gi|433593176|ref|YP_007282662.1| - 2.3e-06 28.1 0.2 8.3e-06 26.3 0.2 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DUF815 PF05673.13 gi|433593176|ref|YP_007282662.1| - 1.5e-05 24.3 0.0 3e-05 23.3 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF815) Sigma54_activat PF00158.26 gi|433593176|ref|YP_007282662.1| - 7.4e-05 22.5 0.2 0.0002 21.1 0.1 1.8 2 0 0 2 2 2 1 Sigma-54 interaction domain NACHT PF05729.12 gi|433593176|ref|YP_007282662.1| - 7.9e-05 22.6 0.0 0.00013 21.9 0.0 1.3 1 0 0 1 1 1 1 NACHT domain AAA_5 PF07728.14 gi|433593176|ref|YP_007282662.1| - 0.001 19.0 0.1 0.0042 17.1 0.0 2.1 2 1 0 2 2 1 1 AAA domain (dynein-related subfamily) Sigma54_activ_2 PF14532.6 gi|433593176|ref|YP_007282662.1| - 0.0016 18.6 0.0 0.0047 17.1 0.0 1.8 2 0 0 2 2 2 1 Sigma-54 interaction domain ATPase_2 PF01637.18 gi|433593176|ref|YP_007282662.1| - 0.0032 17.4 0.7 0.011 15.6 0.0 2.1 3 0 0 3 3 2 1 ATPase domain predominantly from Archaea TniB PF05621.11 gi|433593176|ref|YP_007282662.1| - 0.0037 16.7 0.0 0.0082 15.6 0.0 1.5 1 0 0 1 1 1 1 Bacterial TniB protein RNA_helicase PF00910.22 gi|433593176|ref|YP_007282662.1| - 0.015 15.6 0.0 0.052 14.0 0.0 2.0 2 0 0 2 2 2 0 RNA helicase Rad51 PF08423.11 gi|433593176|ref|YP_007282662.1| - 0.018 14.3 0.0 0.028 13.7 0.0 1.2 1 0 0 1 1 1 0 Rad51 AAA_7 PF12775.7 gi|433593176|ref|YP_007282662.1| - 0.022 14.3 0.1 0.054 13.0 0.1 1.6 1 1 0 1 1 1 0 P-loop containing dynein motor region AAA_32 PF13654.6 gi|433593176|ref|YP_007282662.1| - 0.023 13.5 2.4 1.3 7.7 1.2 2.2 2 0 0 2 2 2 0 AAA domain ABC_tran PF00005.27 gi|433593176|ref|YP_007282662.1| - 0.047 14.2 0.4 0.13 12.8 0.4 2.0 1 1 0 1 1 1 0 ABC transporter AAA_24 PF13479.6 gi|433593176|ref|YP_007282662.1| - 0.065 13.0 0.0 0.11 12.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_assoc_2 PF16193.5 gi|433593176|ref|YP_007282662.1| - 0.066 13.6 0.5 0.2 12.0 0.3 1.9 1 1 0 1 1 1 0 AAA C-terminal domain TsaE PF02367.17 gi|433593176|ref|YP_007282662.1| - 0.1 12.6 0.0 0.49 10.4 0.0 2.0 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE PhoH PF02562.16 gi|433593176|ref|YP_007282662.1| - 0.11 11.9 0.4 10 5.5 0.0 2.4 2 0 0 2 2 2 0 PhoH-like protein RFX_DNA_binding PF02257.15 gi|433593176|ref|YP_007282662.1| - 0.12 13.1 0.0 0.25 12.0 0.0 1.5 1 0 0 1 1 1 0 RFX DNA-binding domain KAP_NTPase PF07693.14 gi|433593176|ref|YP_007282662.1| - 0.26 10.5 2.8 0.71 9.0 0.9 2.2 2 1 0 2 2 2 0 KAP family P-loop domain DEAD PF00270.29 gi|433593176|ref|YP_007282662.1| - 0.42 10.3 3.3 8.9 6.0 0.1 2.6 2 1 0 3 3 3 0 DEAD/DEAH box helicase CSTF2_hinge PF14327.6 gi|433593177|ref|YP_007282663.1| - 0.11 12.9 0.0 0.18 12.2 0.0 1.2 1 0 0 1 1 1 0 Hinge domain of cleavage stimulation factor subunit 2 MarR_2 PF12802.7 gi|433593178|ref|YP_007282664.1| - 2e-15 56.4 1.7 1.5e-08 34.3 0.6 2.7 2 0 0 2 2 2 2 MarR family TrmB PF01978.19 gi|433593178|ref|YP_007282664.1| - 2.1e-09 37.1 0.3 0.00078 19.3 0.0 2.5 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB HTH_23 PF13384.6 gi|433593178|ref|YP_007282664.1| - 2.7e-09 36.6 0.1 0.0013 18.4 0.0 2.7 2 0 0 2 2 2 2 Homeodomain-like domain HTH_24 PF13412.6 gi|433593178|ref|YP_007282664.1| - 3.6e-09 36.0 0.1 0.0024 17.4 0.0 2.4 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|433593178|ref|YP_007282664.1| - 1.8e-08 34.2 0.0 0.0032 17.4 0.1 2.5 2 0 0 2 2 2 2 MarR family HTH_27 PF13463.6 gi|433593178|ref|YP_007282664.1| - 7.7e-08 32.7 1.3 4.8e-07 30.2 0.4 2.3 2 0 0 2 2 2 1 Winged helix DNA-binding domain Rrf2 PF02082.20 gi|433593178|ref|YP_007282664.1| - 2.6e-07 30.9 0.0 0.0082 16.5 0.0 2.6 2 0 0 2 2 2 2 Transcriptional regulator HTH_29 PF13551.6 gi|433593178|ref|YP_007282664.1| - 4.1e-07 29.9 0.2 0.026 14.5 0.0 2.7 2 0 0 2 2 2 2 Winged helix-turn helix HTH_20 PF12840.7 gi|433593178|ref|YP_007282664.1| - 1.6e-06 28.1 0.4 0.027 14.5 0.3 2.7 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|433593178|ref|YP_007282664.1| - 3e-06 27.1 0.0 0.0075 16.2 0.0 2.5 2 0 0 2 2 2 2 Crp-like helix-turn-helix domain HTH_28 PF13518.6 gi|433593178|ref|YP_007282664.1| - 4.3e-06 26.8 0.1 0.017 15.3 0.0 2.9 3 0 0 3 3 2 2 Helix-turn-helix domain HTH_IclR PF09339.10 gi|433593178|ref|YP_007282664.1| - 7.8e-06 25.6 0.0 0.073 12.9 0.1 2.8 2 0 0 2 2 2 2 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|433593178|ref|YP_007282664.1| - 0.00028 20.7 0.0 0.18 11.7 0.1 2.6 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family Penicillinase_R PF03965.16 gi|433593178|ref|YP_007282664.1| - 0.0009 19.6 0.0 1.3 9.4 0.0 2.4 2 0 0 2 2 2 2 Penicillinase repressor GntR PF00392.21 gi|433593178|ref|YP_007282664.1| - 0.00092 18.8 0.0 0.8 9.4 0.0 2.9 3 0 0 3 3 3 1 Bacterial regulatory proteins, gntR family HTH_38 PF13936.6 gi|433593178|ref|YP_007282664.1| - 0.0013 18.5 1.2 0.22 11.3 0.0 2.7 3 0 0 3 3 3 1 Helix-turn-helix domain Crp PF00325.20 gi|433593178|ref|YP_007282664.1| - 0.0085 15.7 0.8 0.1 12.2 0.2 2.5 2 0 0 2 2 2 1 Bacterial regulatory proteins, crp family GerE PF00196.19 gi|433593178|ref|YP_007282664.1| - 0.012 15.2 0.0 5 6.8 0.0 2.3 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family HTH_Tnp_Tc3_1 PF11427.8 gi|433593178|ref|YP_007282664.1| - 0.013 15.3 0.3 13 5.7 0.0 3.2 3 0 0 3 3 3 0 Tc3 transposase HTH_47 PF16221.5 gi|433593178|ref|YP_007282664.1| - 0.018 14.6 0.0 4.3 7.0 0.0 2.8 3 0 0 3 3 3 0 winged helix-turn-helix LZ_Tnp_IS481 PF13011.6 gi|433593178|ref|YP_007282664.1| - 0.032 14.7 0.0 0.071 13.7 0.0 1.6 1 0 0 1 1 1 0 leucine-zipper of insertion element IS481 RPA_C PF08784.11 gi|433593178|ref|YP_007282664.1| - 0.084 13.5 0.0 0.22 12.2 0.0 1.7 2 0 0 2 2 1 0 Replication protein A C terminal PaaX PF07848.12 gi|433593178|ref|YP_007282664.1| - 0.092 13.0 0.0 0.35 11.1 0.0 1.9 1 0 0 1 1 1 0 PaaX-like protein UPF0122 PF04297.14 gi|433593178|ref|YP_007282664.1| - 0.095 13.0 0.0 0.22 11.8 0.0 1.6 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like HTH_41 PF14502.6 gi|433593178|ref|YP_007282664.1| - 0.1 12.3 0.0 0.36 10.5 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_11 PF08279.12 gi|433593178|ref|YP_007282664.1| - 0.18 11.8 0.2 11 6.0 0.0 3.1 3 0 0 3 3 3 0 HTH domain AAA_14 PF13173.6 gi|433593179|ref|YP_007282665.1| - 2.1e-07 31.1 0.0 1.4e-06 28.3 0.0 2.3 3 0 0 3 3 3 1 AAA domain RNA_helicase PF00910.22 gi|433593179|ref|YP_007282665.1| - 0.00012 22.4 0.1 0.00087 19.7 0.0 2.4 2 1 0 2 2 2 1 RNA helicase ATPase_2 PF01637.18 gi|433593179|ref|YP_007282665.1| - 0.00061 19.8 0.0 0.0015 18.5 0.0 1.6 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_24 PF13479.6 gi|433593179|ref|YP_007282665.1| - 0.0023 17.7 0.0 0.0046 16.7 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|433593179|ref|YP_007282665.1| - 0.0038 17.6 0.3 0.013 15.9 0.0 2.1 2 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|433593179|ref|YP_007282665.1| - 0.0057 16.9 0.3 0.048 13.9 0.2 2.5 1 1 1 2 2 2 1 AAA domain HTH_23 PF13384.6 gi|433593179|ref|YP_007282665.1| - 0.0065 16.2 0.0 0.022 14.6 0.0 1.9 1 0 0 1 1 1 1 Homeodomain-like domain AAA_25 PF13481.6 gi|433593179|ref|YP_007282665.1| - 0.0074 15.9 0.0 0.016 14.8 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|433593179|ref|YP_007282665.1| - 0.013 16.0 0.0 0.026 15.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|433593179|ref|YP_007282665.1| - 0.019 14.1 0.0 0.033 13.4 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain IstB_IS21 PF01695.17 gi|433593179|ref|YP_007282665.1| - 0.022 14.5 0.0 0.3 10.8 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein NACHT PF05729.12 gi|433593179|ref|YP_007282665.1| - 0.028 14.3 0.1 0.056 13.4 0.1 1.5 1 0 0 1 1 1 0 NACHT domain AAA PF00004.29 gi|433593179|ref|YP_007282665.1| - 0.033 14.6 0.0 0.077 13.4 0.0 1.6 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) MMR_HSR1 PF01926.23 gi|433593179|ref|YP_007282665.1| - 0.035 14.2 0.0 0.075 13.1 0.0 1.6 1 0 0 1 1 1 0 50S ribosome-binding GTPase Sigma70_r4_2 PF08281.12 gi|433593179|ref|YP_007282665.1| - 0.061 13.0 0.0 0.46 10.2 0.0 2.4 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_29 PF13551.6 gi|433593179|ref|YP_007282665.1| - 0.061 13.3 0.1 0.47 10.5 0.1 2.4 2 0 0 2 2 2 0 Winged helix-turn helix TsaE PF02367.17 gi|433593179|ref|YP_007282665.1| - 0.069 13.1 0.0 0.17 11.9 0.0 1.6 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE Fumble PF03630.14 gi|433593179|ref|YP_007282665.1| - 0.15 11.2 0.0 0.26 10.4 0.0 1.2 1 0 0 1 1 1 0 Fumble Sigma54_activat PF00158.26 gi|433593179|ref|YP_007282665.1| - 0.17 11.6 0.1 16 5.1 0.0 2.3 2 0 0 2 2 2 0 Sigma-54 interaction domain ABC_tran PF00005.27 gi|433593179|ref|YP_007282665.1| - 0.18 12.3 0.0 0.36 11.3 0.0 1.5 1 0 0 1 1 1 0 ABC transporter Lactamase_B_2 PF12706.7 gi|433593180|ref|YP_007282666.1| - 1.1e-08 34.9 0.7 1.1e-08 34.9 0.7 1.9 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|433593180|ref|YP_007282666.1| - 1.6e-08 34.8 3.3 4e-08 33.5 3.3 1.6 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily RE_HpaII PF09561.10 gi|433593180|ref|YP_007282666.1| - 0.012 15.0 0.0 0.02 14.3 0.0 1.2 1 0 0 1 1 1 0 HpaII restriction endonuclease SAPS PF04499.15 gi|433593180|ref|YP_007282666.1| - 6.9 5.3 7.6 10 4.8 7.6 1.2 1 0 0 1 1 1 0 SIT4 phosphatase-associated protein Piwi PF02171.17 gi|433593181|ref|YP_007282667.1| - 4.1e-12 46.0 0.0 1.1e-08 34.7 0.0 2.4 3 0 0 3 3 3 2 Piwi domain PLDc_2 PF13091.6 gi|433593182|ref|YP_007282668.1| - 2.3e-06 27.5 0.0 4.9e-06 26.5 0.0 1.5 1 0 0 1 1 1 1 PLD-like domain ResIII PF04851.15 gi|433593185|ref|YP_007282671.1| - 4.6e-23 82.1 0.0 2.2e-22 79.8 0.0 2.0 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit DEAD PF00270.29 gi|433593185|ref|YP_007282671.1| - 1.8e-08 34.4 0.0 3.4e-08 33.5 0.0 1.5 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|433593185|ref|YP_007282671.1| - 9.4e-07 29.2 0.1 1.1e-05 25.7 0.0 2.6 2 1 0 2 2 2 1 Helicase conserved C-terminal domain SWI2_SNF2 PF18766.1 gi|433593185|ref|YP_007282671.1| - 0.00029 20.6 0.0 0.00069 19.3 0.0 1.6 1 0 0 1 1 1 1 SWI2/SNF2 ATPase ERCC3_RAD25_C PF16203.5 gi|433593185|ref|YP_007282671.1| - 0.0011 18.3 0.1 0.0033 16.7 0.0 1.7 2 0 0 2 2 2 1 ERCC3/RAD25/XPB C-terminal helicase Mod_r PF07200.13 gi|433593185|ref|YP_007282671.1| - 0.08 13.0 3.3 0.13 12.3 1.8 2.1 1 1 0 1 1 1 0 Modifier of rudimentary (Mod(r)) protein Sec8_exocyst PF04048.14 gi|433593185|ref|YP_007282671.1| - 0.15 12.0 0.1 0.37 10.7 0.1 1.6 1 0 0 1 1 1 0 Sec8 exocyst complex component specific domain Peptidase_M78 PF06114.13 gi|433593186|ref|YP_007282672.1| - 0.00058 19.8 0.1 0.001 19.0 0.1 1.3 1 0 0 1 1 1 1 IrrE N-terminal-like domain SprT-like PF10263.9 gi|433593186|ref|YP_007282672.1| - 0.01 15.7 0.1 0.033 14.0 0.1 1.8 2 0 0 2 2 2 0 SprT-like family DUF2268 PF10026.9 gi|433593186|ref|YP_007282672.1| - 0.046 13.3 0.0 0.091 12.3 0.0 1.4 1 0 0 1 1 1 0 Predicted Zn-dependent protease (DUF2268) Aminopep PF10023.9 gi|433593186|ref|YP_007282672.1| - 0.046 13.1 0.0 0.074 12.4 0.0 1.3 1 0 0 1 1 1 0 Putative aminopeptidase ACP53EA PF06313.11 gi|433593188|ref|YP_007282674.1| - 0.02 15.0 0.0 0.026 14.7 0.0 1.2 1 0 0 1 1 1 0 Drosophila ACP53EA protein DUF993 PF06187.11 gi|433593189|ref|YP_007282675.1| - 0.005 15.8 0.1 0.0075 15.2 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF993) DUF402 PF04167.13 gi|433593189|ref|YP_007282675.1| - 0.084 13.1 1.1 0.12 12.6 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF402) Pentapeptide PF00805.22 gi|433593191|ref|YP_007282677.1| - 7.7e-81 265.1 73.2 5.6e-11 41.9 2.0 11.4 6 2 4 11 11 11 11 Pentapeptide repeats (8 copies) Pentapeptide_4 PF13599.6 gi|433593191|ref|YP_007282677.1| - 2.4e-54 181.4 4.0 4e-10 39.7 0.2 6.6 1 1 6 7 7 7 7 Pentapeptide repeats (9 copies) Pentapeptide_3 PF13576.6 gi|433593191|ref|YP_007282677.1| - 3.1e-40 136.1 38.2 4.1e-07 30.0 0.3 10.8 3 3 5 10 10 10 10 Pentapeptide repeats (9 copies) ExoD PF06055.12 gi|433593191|ref|YP_007282677.1| - 0.001 18.5 0.1 0.0018 17.7 0.1 1.3 1 0 0 1 1 1 1 Exopolysaccharide synthesis, ExoD OprD PF03573.13 gi|433593191|ref|YP_007282677.1| - 0.012 14.7 2.4 0.34 9.9 0.0 3.4 2 1 1 4 4 4 0 outer membrane porin, OprD family DUF5003 PF16394.5 gi|433593191|ref|YP_007282677.1| - 0.22 10.6 0.1 0.35 10.0 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF5003) DNA_ligase_ZBD PF03119.16 gi|433593192|ref|YP_007282678.1| - 0.00093 19.2 0.2 0.0019 18.2 0.2 1.6 1 0 0 1 1 1 1 NAD-dependent DNA ligase C4 zinc finger domain N6_N4_Mtase PF01555.18 gi|433593192|ref|YP_007282678.1| - 0.0012 18.6 0.0 0.68 9.6 0.0 2.3 2 0 0 2 2 2 2 DNA methylase IBR PF01485.21 gi|433593192|ref|YP_007282678.1| - 0.54 10.5 6.7 0.21 11.9 2.7 2.2 1 1 1 2 2 2 0 IBR domain, a half RING-finger domain Mrr_cat PF04471.12 gi|433593193|ref|YP_007282679.1| - 1.7e-28 98.9 0.0 3e-28 98.1 0.0 1.4 1 0 0 1 1 1 1 Restriction endonuclease Mrr_cat_2 PF13156.6 gi|433593193|ref|YP_007282679.1| - 0.009 15.9 0.0 0.018 14.9 0.0 1.4 1 0 0 1 1 1 1 Restriction endonuclease DZR PF12773.7 gi|433593193|ref|YP_007282679.1| - 0.063 13.3 0.3 0.063 13.3 0.3 1.8 2 0 0 2 2 2 0 Double zinc ribbon Siva PF05458.12 gi|433593193|ref|YP_007282679.1| - 0.07 12.8 1.7 0.11 12.2 1.7 1.3 1 0 0 1 1 1 0 Cd27 binding protein (Siva) Zn_Tnp_IS1595 PF12760.7 gi|433593193|ref|YP_007282679.1| - 0.12 12.4 5.9 2.6 8.1 0.1 3.5 2 1 1 3 3 3 0 Transposase zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|433593193|ref|YP_007282679.1| - 3.7 7.4 7.3 0.93 9.3 3.8 1.9 2 0 0 2 2 2 0 zinc-ribbon domain zf-RING_5 PF14634.6 gi|433593193|ref|YP_007282679.1| - 4.6 7.3 8.0 62 3.7 7.0 2.4 2 0 0 2 2 2 0 zinc-RING finger domain zf-ribbon_3 PF13248.6 gi|433593193|ref|YP_007282679.1| - 5.9 6.4 6.7 1.2 8.7 1.8 2.1 1 1 1 2 2 2 0 zinc-ribbon domain Abhydrolase_1 PF00561.20 gi|433593195|ref|YP_007282681.1| - 9.6e-26 91.0 0.9 1.2e-24 87.4 0.9 2.0 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|433593195|ref|YP_007282681.1| - 2.8e-21 77.2 2.9 3.6e-21 76.8 2.9 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 gi|433593195|ref|YP_007282681.1| - 2.2e-15 56.6 0.0 3e-15 56.2 0.0 1.2 1 0 0 1 1 1 1 Serine aminopeptidase, S33 DLH PF01738.18 gi|433593195|ref|YP_007282681.1| - 0.00065 19.3 0.0 0.52 9.8 0.0 2.6 2 1 0 2 2 2 2 Dienelactone hydrolase family Esterase PF00756.20 gi|433593195|ref|YP_007282681.1| - 0.081 12.6 0.0 0.15 11.7 0.0 1.5 1 0 0 1 1 1 0 Putative esterase HTH_10 PF04967.12 gi|433593196|ref|YP_007282682.1| - 4.5e-18 64.8 0.0 7.6e-18 64.1 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain HTH_24 PF13412.6 gi|433593196|ref|YP_007282682.1| - 8.9e-05 22.0 0.0 0.00017 21.1 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|433593196|ref|YP_007282682.1| - 0.00034 20.4 0.3 0.00085 19.1 0.0 1.9 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family Sigma70_r4_2 PF08281.12 gi|433593196|ref|YP_007282682.1| - 0.0024 17.5 0.0 0.0082 15.8 0.0 1.9 2 0 0 2 2 2 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 gi|433593196|ref|YP_007282682.1| - 0.0027 17.2 0.1 0.01 15.4 0.1 2.0 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_40 PF14493.6 gi|433593196|ref|YP_007282682.1| - 0.023 15.2 0.0 0.14 12.7 0.0 2.3 2 1 0 2 2 2 0 Helix-turn-helix domain HrcA_DNA-bdg PF03444.15 gi|433593196|ref|YP_007282682.1| - 0.026 14.2 0.0 0.062 12.9 0.0 1.6 2 0 0 2 2 2 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Fe_dep_repress PF01325.19 gi|433593196|ref|YP_007282682.1| - 0.029 14.5 0.0 0.074 13.3 0.0 1.7 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain GerE PF00196.19 gi|433593196|ref|YP_007282682.1| - 0.088 12.4 0.1 1 9.0 0.0 2.4 3 0 0 3 3 3 0 Bacterial regulatory proteins, luxR family Complex1_49kDa PF00346.19 gi|433593197|ref|YP_007282683.1| - 5.1e-82 275.0 0.1 2.4e-80 269.5 0.1 2.3 1 1 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Complex1_30kDa PF00329.19 gi|433593197|ref|YP_007282683.1| - 1.7e-36 125.5 0.2 3.3e-36 124.6 0.2 1.5 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Methyltransf_23 PF13489.6 gi|433593199|ref|YP_007282685.1| - 2e-23 83.0 0.0 2.4e-23 82.8 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|433593199|ref|YP_007282685.1| - 2.4e-22 79.4 0.0 1.2e-21 77.2 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|433593199|ref|YP_007282685.1| - 1.2e-20 73.9 0.0 2e-20 73.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|433593199|ref|YP_007282685.1| - 7.1e-18 64.9 0.0 9.2e-18 64.5 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|433593199|ref|YP_007282685.1| - 9.9e-15 54.5 0.0 1.3e-14 54.1 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|433593199|ref|YP_007282685.1| - 4.2e-12 46.7 0.0 6.1e-12 46.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.12 gi|433593199|ref|YP_007282685.1| - 1.2e-05 25.0 0.0 1.8e-05 24.5 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW CMAS PF02353.20 gi|433593199|ref|YP_007282685.1| - 0.00043 19.7 0.0 0.00065 19.1 0.0 1.3 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase UPF0020 PF01170.18 gi|433593199|ref|YP_007282685.1| - 0.00075 19.2 0.0 0.0037 17.0 0.0 1.9 2 0 0 2 2 2 1 Putative RNA methylase family UPF0020 MTS PF05175.14 gi|433593199|ref|YP_007282685.1| - 0.0065 16.0 0.0 0.0098 15.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Pox_MCEL PF03291.16 gi|433593199|ref|YP_007282685.1| - 0.032 13.3 0.0 0.041 13.0 0.0 1.1 1 0 0 1 1 1 0 mRNA capping enzyme Methyltransf_29 PF03141.16 gi|433593199|ref|YP_007282685.1| - 0.038 12.6 0.0 0.048 12.2 0.0 1.2 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase PCMT PF01135.19 gi|433593199|ref|YP_007282685.1| - 0.082 12.6 0.0 0.11 12.2 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) DUF3784 PF12650.7 gi|433593200|ref|YP_007282686.1| - 2.1e-05 24.6 0.5 2.8e-05 24.2 0.5 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF3784) DUF5357 PF17310.2 gi|433593200|ref|YP_007282686.1| - 0.0099 14.5 0.4 0.011 14.3 0.4 1.0 1 0 0 1 1 1 1 Family of unknown function (DUF5357) DUF973 PF06157.11 gi|433593200|ref|YP_007282686.1| - 0.016 14.3 2.2 0.017 14.2 2.2 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF973) DUF3185 PF11381.8 gi|433593200|ref|YP_007282686.1| - 0.26 11.3 6.1 1.9 8.5 6.1 2.2 1 1 0 1 1 1 0 Protein of unknown function (DUF3185) Amidohydro_1 PF01979.20 gi|433593201|ref|YP_007282687.1| - 3.8e-45 154.7 0.0 4.6e-45 154.4 0.0 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|433593201|ref|YP_007282687.1| - 4.7e-20 72.5 2.3 5.5e-12 45.9 0.4 2.3 2 0 0 2 2 2 2 Amidohydrolase family DUF2318 PF10080.9 gi|433593202|ref|YP_007282688.1| - 0.0075 16.4 0.1 0.0097 16.0 0.1 1.2 1 0 0 1 1 1 1 Predicted membrane protein (DUF2318) RPA_interact_C PF14768.6 gi|433593202|ref|YP_007282688.1| - 0.013 16.1 0.4 0.017 15.7 0.4 1.3 1 0 0 1 1 1 0 Replication protein A interacting C-terminal DZR PF12773.7 gi|433593202|ref|YP_007282688.1| - 0.014 15.4 0.7 0.027 14.5 0.7 1.5 1 0 0 1 1 1 0 Double zinc ribbon Nudix_N_2 PF14803.6 gi|433593202|ref|YP_007282688.1| - 0.021 14.7 3.0 2.4 8.2 0.1 2.8 3 0 0 3 3 3 0 Nudix N-terminal GFA PF04828.14 gi|433593202|ref|YP_007282688.1| - 0.092 13.1 1.4 2.3 8.6 0.2 2.2 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme DpnI PF06044.12 gi|433593202|ref|YP_007282688.1| - 0.12 12.0 0.6 0.16 11.6 0.6 1.2 1 0 0 1 1 1 0 Dam-replacing family DNA_ligase_ZBD PF03119.16 gi|433593202|ref|YP_007282688.1| - 0.28 11.2 4.3 0.9 9.6 0.5 2.4 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zinc_ribbon_2 PF13240.6 gi|433593202|ref|YP_007282688.1| - 0.32 10.8 4.8 4.1 7.3 0.2 2.7 3 0 0 3 3 3 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|433593202|ref|YP_007282688.1| - 0.49 10.5 3.9 17 5.6 0.4 2.7 3 0 0 3 3 3 0 Zinc ribbon domain OrfB_Zn_ribbon PF07282.11 gi|433593203|ref|YP_007282689.1| - 0.098 12.6 0.1 0.18 11.8 0.1 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain A2L_zn_ribbon PF08792.10 gi|433593203|ref|YP_007282689.1| - 0.18 11.6 1.2 2.2 8.1 0.0 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain RNA_POL_M_15KD PF02150.16 gi|433593203|ref|YP_007282689.1| - 0.21 11.5 0.1 0.21 11.5 0.1 2.1 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit zf_C2H2_10 PF18414.1 gi|433593203|ref|YP_007282689.1| - 0.3 10.7 5.7 1.7 8.2 0.3 2.3 2 0 0 2 2 2 0 C2H2 type zinc-finger DUF3797 PF12677.7 gi|433593203|ref|YP_007282689.1| - 1.7 8.6 5.6 2 8.4 0.5 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) Cytochrom_C_2 PF01322.20 gi|433593204|ref|YP_007282690.1| - 0.18 12.7 0.1 0.22 12.4 0.1 1.3 1 0 0 1 1 1 0 Cytochrome C' NIR_SIR_ferr PF03460.17 gi|433593207|ref|YP_007282693.1| - 0.13 12.1 0.0 4.3 7.2 0.0 2.2 2 0 0 2 2 2 0 Nitrite/Sulfite reductase ferredoxin-like half domain zinc_ribbon_2 PF13240.6 gi|433593209|ref|YP_007282695.1| - 0.018 14.8 1.7 0.018 14.8 1.7 2.5 3 0 0 3 3 3 0 zinc-ribbon domain zinc_ribbon_15 PF17032.5 gi|433593209|ref|YP_007282695.1| - 1.6 9.5 7.0 7.5 7.4 0.4 2.7 2 1 1 3 3 3 0 zinc-ribbon family RNA_POL_M_15KD PF02150.16 gi|433593209|ref|YP_007282695.1| - 1.9 8.4 9.4 11 6.0 0.3 3.6 3 1 0 3 3 3 0 RNA polymerases M/15 Kd subunit DZR PF12773.7 gi|433593209|ref|YP_007282695.1| - 2.3 8.3 8.9 1.7 8.8 1.3 2.6 2 1 0 2 2 2 0 Double zinc ribbon Zf_RING PF16744.5 gi|433593209|ref|YP_007282695.1| - 7.1 6.8 6.6 12 6.1 0.0 3.2 4 0 0 4 4 4 0 KIAA1045 RING finger OrfB_Zn_ribbon PF07282.11 gi|433593210|ref|YP_007282696.1| - 4.1e-23 81.1 1.8 4.1e-23 81.1 1.8 1.7 2 0 0 2 2 2 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|433593210|ref|YP_007282696.1| - 1.5e-06 28.4 0.1 5.3e-06 26.7 0.0 1.9 2 0 0 2 2 2 1 Probable transposase HypA PF01155.19 gi|433593210|ref|YP_007282696.1| - 0.0067 16.4 0.0 0.015 15.3 0.0 1.5 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA TF_Zn_Ribbon PF08271.12 gi|433593210|ref|YP_007282696.1| - 0.55 9.8 2.4 13 5.4 2.4 2.6 1 1 0 1 1 1 0 TFIIB zinc-binding DNA_RNApol_7kD PF03604.13 gi|433593210|ref|YP_007282696.1| - 1.5 8.6 5.0 2.6 7.8 2.3 2.6 2 1 1 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit zinc_ribbon_2 PF13240.6 gi|433593210|ref|YP_007282696.1| - 3.4 7.5 9.3 4.9 7.0 5.3 2.7 2 1 1 3 3 3 0 zinc-ribbon domain Rubredoxin_2 PF18073.1 gi|433593210|ref|YP_007282696.1| - 4.4 7.1 12.6 1.4 8.7 1.5 2.7 3 0 0 3 3 3 0 Rubredoxin metal binding domain TFIIB PF00382.19 gi|433593211|ref|YP_007282697.1| - 2.2e-30 104.5 2.1 1.9e-16 59.9 0.4 2.4 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|433593211|ref|YP_007282697.1| - 1.9e-12 46.5 2.6 3.4e-12 45.7 2.6 1.5 1 0 0 1 1 1 1 TFIIB zinc-binding RB_B PF01857.20 gi|433593211|ref|YP_007282697.1| - 0.0073 16.3 0.0 0.012 15.6 0.0 1.3 1 0 0 1 1 1 1 Retinoblastoma-associated protein B domain OrfB_Zn_ribbon PF07282.11 gi|433593211|ref|YP_007282697.1| - 0.031 14.2 1.4 0.16 12.0 1.2 2.1 2 0 0 2 2 2 0 Putative transposase DNA-binding domain DZR PF12773.7 gi|433593211|ref|YP_007282697.1| - 0.04 14.0 1.0 0.086 12.9 1.0 1.5 1 0 0 1 1 1 0 Double zinc ribbon UPF0547 PF10571.9 gi|433593211|ref|YP_007282697.1| - 0.12 12.5 1.5 0.27 11.3 1.5 1.6 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 PEPcase PF00311.17 gi|433593212|ref|YP_007282698.1| - 1.7e-234 780.5 0.0 2.3e-234 780.1 0.0 1.2 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxylase PEPcase_2 PF14010.6 gi|433593212|ref|YP_007282698.1| - 0.0004 19.0 0.0 0.00079 18.0 0.0 1.4 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxylase DUF4070 PF13282.6 gi|433593212|ref|YP_007282698.1| - 0.099 12.8 0.0 3.3 7.8 0.1 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4070) Peptidase_S9 PF00326.21 gi|433593213|ref|YP_007282699.1| - 4.7e-17 62.2 0.1 7.8e-17 61.5 0.1 1.2 1 0 0 1 1 1 1 Prolyl oligopeptidase family PD40 PF07676.12 gi|433593213|ref|YP_007282699.1| - 1.1e-07 31.6 0.7 0.007 16.3 0.1 5.0 4 0 0 4 4 4 2 WD40-like Beta Propeller Repeat DPPIV_N PF00930.21 gi|433593213|ref|YP_007282699.1| - 0.00055 18.8 0.0 2 7.1 0.0 3.6 3 1 0 3 3 3 3 Dipeptidyl peptidase IV (DPP IV) N-terminal region DLH PF01738.18 gi|433593213|ref|YP_007282699.1| - 0.0011 18.6 0.0 0.0018 17.9 0.0 1.2 1 0 0 1 1 1 1 Dienelactone hydrolase family Hydrolase_4 PF12146.8 gi|433593213|ref|YP_007282699.1| - 0.0025 17.1 0.0 0.0041 16.4 0.0 1.2 1 0 0 1 1 1 1 Serine aminopeptidase, S33 4HBT_2 PF13279.6 gi|433593214|ref|YP_007282700.1| - 4.1e-16 59.6 0.0 5e-16 59.3 0.0 1.1 1 0 0 1 1 1 1 Thioesterase-like superfamily 4HBT PF03061.22 gi|433593214|ref|YP_007282700.1| - 6e-15 55.4 0.1 9e-15 54.8 0.1 1.3 1 0 0 1 1 1 1 Thioesterase superfamily Acyl-ACP_TE PF01643.17 gi|433593214|ref|YP_007282700.1| - 2.2e-08 33.7 0.0 3.3e-08 33.1 0.0 1.4 1 1 0 1 1 1 1 Acyl-ACP thioesterase Rhodanese PF00581.20 gi|433593214|ref|YP_007282700.1| - 0.003 18.0 0.0 1.9 9.0 0.0 2.1 1 1 1 2 2 2 2 Rhodanese-like domain LUD_dom PF02589.15 gi|433593215|ref|YP_007282701.1| - 2.1e-44 151.5 0.1 3.3e-44 150.9 0.1 1.3 1 0 0 1 1 1 1 LUD domain Fer4_8 PF13183.6 gi|433593215|ref|YP_007282701.1| - 1.3e-08 35.1 5.1 3.1e-08 33.9 5.1 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|433593215|ref|YP_007282701.1| - 3.1e-07 30.4 3.3 0.0012 18.9 0.2 2.6 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|433593215|ref|YP_007282701.1| - 4.4e-07 30.3 3.8 8.6e-07 29.4 3.8 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|433593215|ref|YP_007282701.1| - 9.9e-07 28.8 3.1 2.9e-06 27.3 3.2 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|433593215|ref|YP_007282701.1| - 2.2e-05 25.0 7.0 6.1e-05 23.5 7.0 1.8 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|433593215|ref|YP_007282701.1| - 0.00032 20.4 13.0 0.0011 18.6 2.2 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|433593215|ref|YP_007282701.1| - 0.00042 20.4 9.7 0.0035 17.4 9.7 2.3 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|433593215|ref|YP_007282701.1| - 0.015 15.4 2.3 0.015 15.4 2.3 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_20 PF14691.6 gi|433593215|ref|YP_007282701.1| - 0.022 14.5 3.9 0.03 14.1 0.2 2.6 2 0 0 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_2 PF12797.7 gi|433593215|ref|YP_007282701.1| - 0.035 14.2 14.6 0.15 12.2 3.5 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_4 PF12800.7 gi|433593215|ref|YP_007282701.1| - 0.059 13.9 14.4 0.16 12.6 3.9 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_22 PF17179.4 gi|433593215|ref|YP_007282701.1| - 0.072 13.9 7.7 0.074 13.9 1.1 2.5 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|433593215|ref|YP_007282701.1| - 0.14 12.3 10.2 0.098 12.9 1.6 2.6 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|433593215|ref|YP_007282701.1| - 0.15 13.1 17.5 0.069 14.1 5.1 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_16 PF13484.6 gi|433593215|ref|YP_007282701.1| - 7.7 7.5 15.4 4 8.5 4.0 2.5 1 1 1 2 2 2 0 4Fe-4S double cluster binding domain LUD_dom PF02589.15 gi|433593216|ref|YP_007282702.1| - 1.6e-14 54.1 0.0 1.9e-14 53.8 0.0 1.1 1 0 0 1 1 1 1 LUD domain DDE_Tnp_1 PF01609.21 gi|433593217|ref|YP_007282703.1| - 2.6e-17 63.2 0.0 4.1e-17 62.6 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.11 gi|433593217|ref|YP_007282703.1| - 9.2e-05 22.4 0.0 0.00018 21.5 0.0 1.5 1 0 0 1 1 1 1 Transposase domain (DUF772) OrfB_IS605 PF01385.19 gi|433593218|ref|YP_007282704.1| - 4.8e-26 91.3 0.0 8.4e-26 90.6 0.0 1.4 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.11 gi|433593218|ref|YP_007282704.1| - 2.3e-19 69.1 0.9 4.6e-19 68.1 0.9 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain mRNA_stabil PF13929.6 gi|433593218|ref|YP_007282704.1| - 0.25 10.3 0.0 0.98 8.3 0.0 1.8 2 0 0 2 2 2 0 mRNA stabilisation SNF PF00209.18 gi|433593220|ref|YP_007282706.1| - 0.0044 15.8 0.7 0.0051 15.6 0.7 1.0 1 0 0 1 1 1 1 Sodium:neurotransmitter symporter family Phage_holin_3_6 PF07332.11 gi|433593220|ref|YP_007282706.1| - 0.0055 16.7 1.4 0.0066 16.5 1.4 1.1 1 0 0 1 1 1 1 Putative Actinobacterial Holin-X, holin superfamily III HalOD1 PF18545.1 gi|433593221|ref|YP_007282707.1| - 4.9e-07 29.9 1.5 6.2e-07 29.6 1.5 1.3 1 0 0 1 1 1 1 Halobacterial output domain 1 DUF2250 PF10007.9 gi|433593222|ref|YP_007282708.1| - 4.8e-05 23.4 0.0 0.00028 20.9 0.0 1.8 1 1 1 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2250) Mrr_N PF14338.6 gi|433593222|ref|YP_007282708.1| - 0.001 19.1 0.0 0.0013 18.8 0.0 1.2 1 0 0 1 1 1 1 Mrr N-terminal domain MarR_2 PF12802.7 gi|433593222|ref|YP_007282708.1| - 0.014 15.3 0.0 0.017 15.0 0.0 1.3 1 1 0 1 1 1 0 MarR family DUF4423 PF14394.6 gi|433593222|ref|YP_007282708.1| - 0.12 12.1 0.0 0.14 11.8 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_24 PF13412.6 gi|433593222|ref|YP_007282708.1| - 0.16 11.5 0.0 0.59 9.7 0.0 1.8 1 1 0 1 1 1 0 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|433593224|ref|YP_007282710.1| - 2.9e-10 39.9 0.2 1.1e-09 38.0 0.1 1.9 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 gi|433593224|ref|YP_007282710.1| - 2.9e-05 24.0 0.2 7.9e-05 22.6 0.1 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|433593224|ref|YP_007282710.1| - 3.3e-05 23.4 0.0 0.00044 19.7 0.0 2.4 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|433593224|ref|YP_007282710.1| - 0.00019 21.2 0.0 0.00047 20.0 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|433593224|ref|YP_007282710.1| - 0.00028 20.7 0.7 0.001 18.9 0.1 2.2 2 0 0 2 2 2 1 MarR family HTH_IclR PF09339.10 gi|433593224|ref|YP_007282710.1| - 0.0004 20.1 0.2 0.0057 16.4 0.0 2.4 2 0 0 2 2 2 1 IclR helix-turn-helix domain F-112 PF09645.10 gi|433593224|ref|YP_007282710.1| - 0.00068 19.7 0.0 0.93 9.6 0.0 2.2 2 0 0 2 2 2 2 F-112 protein HTH_27 PF13463.6 gi|433593224|ref|YP_007282710.1| - 0.018 15.5 0.0 0.042 14.3 0.0 1.7 1 0 0 1 1 1 0 Winged helix DNA-binding domain RP-C PF03428.13 gi|433593224|ref|YP_007282710.1| - 0.02 14.6 0.0 0.037 13.7 0.0 1.4 1 0 0 1 1 1 0 Replication protein C N-terminal domain Penicillinase_R PF03965.16 gi|433593224|ref|YP_007282710.1| - 0.022 15.1 0.0 0.042 14.2 0.0 1.4 1 0 0 1 1 1 0 Penicillinase repressor PadR PF03551.14 gi|433593224|ref|YP_007282710.1| - 0.099 12.6 0.1 0.4 10.7 0.0 2.2 2 1 1 3 3 3 0 Transcriptional regulator PadR-like family CdiI_2 PF18593.1 gi|433593225|ref|YP_007282711.1| - 0.00017 22.2 11.2 1.8 9.3 0.0 6.2 3 1 4 7 7 7 2 CdiI immunity protein NB-ARC PF00931.22 gi|433593225|ref|YP_007282711.1| - 0.051 12.8 0.0 5.8 6.0 0.0 2.5 2 0 0 2 2 2 0 NB-ARC domain Spc7_C2 PF15577.6 gi|433593225|ref|YP_007282711.1| - 0.11 12.7 0.1 0.48 10.5 0.0 2.1 2 0 0 2 2 2 0 Spc7_C2 RPN6_N PF18055.1 gi|433593225|ref|YP_007282711.1| - 0.11 12.9 0.2 0.72 10.2 0.0 2.4 1 1 1 2 2 2 0 26S proteasome regulatory subunit RPN6 N-terminal domain DUF2791 PF10923.8 gi|433593225|ref|YP_007282711.1| - 0.43 9.4 2.9 1.1 8.0 0.2 2.8 3 0 0 3 3 3 0 P-loop Domain of unknown function (DUF2791) Cob_adeno_trans PF01923.18 gi|433593225|ref|YP_007282711.1| - 0.61 10.2 3.7 0.67 10.1 0.6 2.6 2 1 0 2 2 2 0 Cobalamin adenosyltransferase HEAT_2 PF13646.6 gi|433593225|ref|YP_007282711.1| - 3.5 8.1 15.8 0.027 14.8 2.1 4.2 5 0 0 5 5 5 0 HEAT repeats AAA_16 PF13191.6 gi|433593225|ref|YP_007282711.1| - 9.8 6.5 21.4 0.68 10.3 4.0 5.9 4 3 1 5 5 5 0 AAA ATPase domain MarR_2 PF12802.7 gi|433593226|ref|YP_007282712.1| - 0.067 13.1 0.0 0.11 12.5 0.0 1.3 1 0 0 1 1 1 0 MarR family SWIM PF04434.17 gi|433593229|ref|YP_007282715.1| - 0.0036 16.9 0.1 0.008 15.8 0.1 1.5 1 0 0 1 1 1 1 SWIM zinc finger Rubredoxin_2 PF18073.1 gi|433593229|ref|YP_007282715.1| - 0.029 14.1 1.6 0.055 13.2 1.6 1.5 1 0 0 1 1 1 0 Rubredoxin metal binding domain DUF4379 PF14311.6 gi|433593229|ref|YP_007282715.1| - 0.045 14.1 1.1 1.3 9.5 0.1 2.3 2 0 0 2 2 2 0 Probable Zinc-ribbon domain CxC4 PF18717.1 gi|433593229|ref|YP_007282715.1| - 0.16 11.8 1.5 2.9 7.8 0.2 2.2 2 0 0 2 2 2 0 CxC4 like cysteine cluster associated with KDZ transposases Zn-ribbon_8 PF09723.10 gi|433593229|ref|YP_007282715.1| - 7.4 6.8 7.4 2 8.6 1.4 2.4 2 0 0 2 2 2 0 Zinc ribbon domain KAP_NTPase PF07693.14 gi|433593230|ref|YP_007282716.1| - 3.1e-24 85.8 0.0 1.4e-23 83.6 0.0 2.1 1 1 0 1 1 1 1 KAP family P-loop domain ABC_tran PF00005.27 gi|433593230|ref|YP_007282716.1| - 0.00017 22.1 1.4 0.091 13.3 0.0 3.7 4 0 0 4 4 4 1 ABC transporter AAA_16 PF13191.6 gi|433593230|ref|YP_007282716.1| - 0.00059 20.3 1.1 0.026 14.9 0.0 4.0 4 2 0 4 4 4 1 AAA ATPase domain AAA_22 PF13401.6 gi|433593230|ref|YP_007282716.1| - 0.0027 18.0 0.3 0.12 12.6 0.0 3.6 3 1 0 3 3 3 1 AAA domain Cnd1 PF12717.7 gi|433593230|ref|YP_007282716.1| - 0.024 14.7 0.2 1.1 9.2 0.1 3.6 2 1 1 3 3 3 0 non-SMC mitotic condensation complex subunit 1 AAA_18 PF13238.6 gi|433593230|ref|YP_007282716.1| - 0.065 13.8 0.2 6.5 7.3 0.0 3.8 3 0 0 3 3 3 0 AAA domain DUF87 PF01935.17 gi|433593230|ref|YP_007282716.1| - 0.62 10.1 8.4 27 4.8 0.4 4.8 3 1 0 3 3 3 0 Helicase HerA, central domain HNH_repeat PF18780.1 gi|433593231|ref|YP_007282717.1| - 6.7e-06 25.8 0.0 0.055 13.3 0.0 2.4 2 0 0 2 2 2 2 Homing endonuclease repeat LexA_DNA_bind PF01726.16 gi|433593231|ref|YP_007282717.1| - 0.0005 19.8 0.1 0.12 12.2 0.0 2.5 2 1 0 2 2 2 2 LexA DNA binding domain Sigma70_r3 PF04539.16 gi|433593231|ref|YP_007282717.1| - 0.0008 19.5 0.1 0.28 11.3 0.0 2.5 2 0 0 2 2 2 2 Sigma-70 region 3 Actin_micro PF17003.5 gi|433593231|ref|YP_007282717.1| - 0.012 14.8 0.0 0.012 14.8 0.0 1.1 1 0 0 1 1 1 0 Putative actin-like family Zn-ribbon_8 PF09723.10 gi|433593231|ref|YP_007282717.1| - 0.017 15.2 0.2 0.033 14.3 0.2 1.5 1 0 0 1 1 1 0 Zinc ribbon domain Desulfoferrod_N PF06397.12 gi|433593231|ref|YP_007282717.1| - 0.11 12.2 0.1 0.16 11.6 0.1 1.3 1 0 0 1 1 1 0 Desulfoferrodoxin, N-terminal domain tRNA_anti-codon PF01336.25 gi|433593232|ref|YP_007282718.1| - 7.8e-06 25.8 0.0 1.5e-05 24.9 0.0 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain LppA PF16708.5 gi|433593232|ref|YP_007282718.1| - 0.22 11.4 4.6 0.46 10.4 4.6 1.5 1 0 0 1 1 1 0 Lipoprotein confined to pathogenic Mycobacterium PemK_toxin PF02452.17 gi|433593234|ref|YP_007282720.1| - 0.018 15.4 0.0 0.022 15.2 0.0 1.2 1 0 0 1 1 1 0 PemK-like, MazF-like toxin of type II toxin-antitoxin system MarR_2 PF12802.7 gi|433593235|ref|YP_007282721.1| - 1.9e-06 27.6 0.0 2.8e-06 27.1 0.0 1.3 1 0 0 1 1 1 1 MarR family DUF2250 PF10007.9 gi|433593235|ref|YP_007282721.1| - 0.00012 22.1 0.2 0.00014 21.9 0.2 1.3 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) Rrf2 PF02082.20 gi|433593235|ref|YP_007282721.1| - 0.00034 20.9 0.1 0.00083 19.7 0.0 1.5 2 0 0 2 2 2 1 Transcriptional regulator Fe_dep_repress PF01325.19 gi|433593235|ref|YP_007282721.1| - 0.00045 20.4 0.0 0.0063 16.7 0.0 2.1 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_27 PF13463.6 gi|433593235|ref|YP_007282721.1| - 0.0011 19.4 0.1 0.002 18.6 0.1 1.5 1 1 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.19 gi|433593235|ref|YP_007282721.1| - 0.0012 18.7 0.0 0.0018 18.1 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.6 gi|433593235|ref|YP_007282721.1| - 0.0013 18.6 0.0 0.0019 18.1 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_11 PF08279.12 gi|433593235|ref|YP_007282721.1| - 0.0051 16.7 0.1 0.0081 16.1 0.1 1.3 1 0 0 1 1 1 1 HTH domain MarR PF01047.22 gi|433593235|ref|YP_007282721.1| - 0.013 15.4 0.0 0.023 14.6 0.0 1.4 1 0 0 1 1 1 0 MarR family HTH_IclR PF09339.10 gi|433593235|ref|YP_007282721.1| - 0.017 14.9 0.0 0.026 14.3 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|433593235|ref|YP_007282721.1| - 0.018 14.6 0.1 0.036 13.6 0.1 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_29 PF13551.6 gi|433593235|ref|YP_007282721.1| - 0.018 15.0 0.0 0.03 14.3 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix TFIIE_alpha PF02002.17 gi|433593235|ref|YP_007282721.1| - 0.038 13.8 0.4 0.05 13.5 0.4 1.4 1 1 0 1 1 1 0 TFIIE alpha subunit HTH_36 PF13730.6 gi|433593235|ref|YP_007282721.1| - 0.085 12.8 0.0 0.12 12.3 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_45 PF14947.6 gi|433593235|ref|YP_007282721.1| - 0.1 12.6 0.0 0.16 12.0 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix Glyco_tranf_2_4 PF13704.6 gi|433593235|ref|YP_007282721.1| - 2.2 8.8 7.3 0.76 10.3 0.3 2.7 1 1 2 3 3 3 0 Glycosyl transferase family 2 PadR PF03551.14 gi|433593236|ref|YP_007282722.1| - 5.2e-17 61.6 0.9 6.7e-17 61.2 0.9 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_45 PF14947.6 gi|433593236|ref|YP_007282722.1| - 0.0052 16.7 0.1 0.0071 16.3 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DUF1495 PF07381.11 gi|433593236|ref|YP_007282722.1| - 0.054 13.3 0.0 0.084 12.7 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) MarR_2 PF12802.7 gi|433593236|ref|YP_007282722.1| - 0.083 12.8 0.7 0.55 10.2 0.1 2.2 2 1 0 2 2 2 0 MarR family DUF4364 PF14277.6 gi|433593236|ref|YP_007282722.1| - 0.14 11.9 0.0 0.16 11.7 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) UPF0175 PF03683.13 gi|433593237|ref|YP_007282723.1| - 2.3e-11 43.2 0.0 2.7e-11 43.0 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0175) ParE_toxin PF05016.15 gi|433593238|ref|YP_007282724.1| - 0.0016 19.0 0.0 0.0025 18.4 0.0 1.3 1 0 0 1 1 1 1 ParE toxin of type II toxin-antitoxin system, parDE RHH_1 PF01402.21 gi|433593239|ref|YP_007282725.1| - 5.5e-05 22.9 0.1 9.9e-05 22.1 0.1 1.4 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family HicB_lk_antitox PF15919.5 gi|433593239|ref|YP_007282725.1| - 0.082 13.0 0.0 0.12 12.4 0.0 1.3 1 0 0 1 1 1 0 HicB_like antitoxin of bacterial toxin-antitoxin system ATG16 PF08614.11 gi|433593240|ref|YP_007282726.1| - 0.0016 18.7 6.8 0.0016 18.7 6.8 2.1 2 0 0 2 2 2 1 Autophagy protein 16 (ATG16) FlgN PF05130.12 gi|433593240|ref|YP_007282726.1| - 0.003 18.1 2.0 0.0072 16.8 2.0 1.6 1 0 0 1 1 1 1 FlgN protein Phage_GP20 PF06810.11 gi|433593240|ref|YP_007282726.1| - 0.0031 17.3 3.8 0.0061 16.4 3.8 1.4 1 0 0 1 1 1 1 Phage minor structural protein GP20 SlyX PF04102.12 gi|433593240|ref|YP_007282726.1| - 0.0067 17.0 4.3 0.083 13.5 3.5 2.7 3 0 0 3 3 2 1 SlyX KASH_CCD PF14662.6 gi|433593240|ref|YP_007282726.1| - 0.016 15.1 3.8 0.028 14.2 3.8 1.3 1 0 0 1 1 1 0 Coiled-coil region of CCDC155 or KASH ZapB PF06005.12 gi|433593240|ref|YP_007282726.1| - 0.017 15.6 4.8 0.043 14.3 4.8 1.6 1 0 0 1 1 1 0 Cell division protein ZapB DUF3450 PF11932.8 gi|433593240|ref|YP_007282726.1| - 0.033 13.5 0.9 0.061 12.6 0.9 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3450) DUF3972 PF13118.6 gi|433593240|ref|YP_007282726.1| - 0.043 14.2 1.2 0.13 12.7 1.2 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF3972) FlaC_arch PF05377.11 gi|433593240|ref|YP_007282726.1| - 0.053 13.9 1.1 0.11 13.0 1.1 1.5 1 0 0 1 1 1 0 Flagella accessory protein C (FlaC) UPF0242 PF06785.11 gi|433593240|ref|YP_007282726.1| - 0.079 13.1 4.9 0.14 12.3 4.9 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus FlxA PF14282.6 gi|433593240|ref|YP_007282726.1| - 0.084 12.9 0.5 0.17 11.9 0.5 1.6 1 0 0 1 1 1 0 FlxA-like protein Golgin_A5 PF09787.9 gi|433593240|ref|YP_007282726.1| - 0.093 12.2 6.0 0.15 11.5 6.0 1.2 1 0 0 1 1 1 0 Golgin subfamily A member 5 Rootletin PF15035.6 gi|433593240|ref|YP_007282726.1| - 0.095 12.7 6.2 0.22 11.5 5.4 1.9 1 1 0 2 2 2 0 Ciliary rootlet component, centrosome cohesion Nif11 PF07862.11 gi|433593240|ref|YP_007282726.1| - 0.11 12.8 0.9 5 7.5 0.3 2.9 2 0 0 2 2 2 0 Nif11 domain DUF16 PF01519.16 gi|433593240|ref|YP_007282726.1| - 0.12 12.8 0.2 0.25 11.8 0.2 1.5 1 0 0 1 1 1 0 Protein of unknown function DUF16 DHR10 PF18595.1 gi|433593240|ref|YP_007282726.1| - 0.12 12.4 8.0 0.06 13.4 5.3 1.8 2 0 0 2 2 1 0 Designed helical repeat protein 10 domain Med9 PF07544.13 gi|433593240|ref|YP_007282726.1| - 0.19 11.9 1.1 0.35 11.0 1.1 1.5 1 0 0 1 1 1 0 RNA polymerase II transcription mediator complex subunit 9 Prefoldin_2 PF01920.20 gi|433593240|ref|YP_007282726.1| - 0.22 11.5 2.9 0.5 10.3 2.9 1.5 1 0 0 1 1 1 0 Prefoldin subunit DUF4446 PF14584.6 gi|433593240|ref|YP_007282726.1| - 0.3 11.1 0.6 0.58 10.1 0.6 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF4446) Atg14 PF10186.9 gi|433593240|ref|YP_007282726.1| - 0.35 9.9 2.1 0.54 9.3 2.1 1.2 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 APG6_N PF17675.1 gi|433593240|ref|YP_007282726.1| - 0.37 11.3 11.4 0.037 14.6 6.8 1.6 2 0 0 2 2 1 0 Apg6 coiled-coil region Phage_GPO PF05929.11 gi|433593240|ref|YP_007282726.1| - 0.56 9.8 5.0 7.8 6.0 2.1 2.4 2 0 0 2 2 2 0 Phage capsid scaffolding protein (GPO) serine peptidase TrwB_AAD_bind PF10412.9 gi|433593242|ref|YP_007282728.1| - 6.2e-07 28.7 0.1 2e-05 23.7 0.1 2.2 1 1 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain TraG-D_C PF12696.7 gi|433593242|ref|YP_007282728.1| - 1.6e-05 24.9 0.0 3.4e-05 23.8 0.0 1.5 1 0 0 1 1 1 1 TraM recognition site of TraD and TraG T4SS-DNA_transf PF02534.14 gi|433593242|ref|YP_007282728.1| - 0.0002 20.3 0.1 0.00068 18.5 0.1 1.7 2 0 0 2 2 2 1 Type IV secretory system Conjugative DNA transfer HHH_6 PF14579.6 gi|433593242|ref|YP_007282728.1| - 0.0084 16.3 0.0 0.017 15.4 0.0 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix motif DUF87 PF01935.17 gi|433593242|ref|YP_007282728.1| - 0.11 12.6 0.3 1.8 8.6 0.0 2.5 2 1 0 2 2 2 0 Helicase HerA, central domain FtsK_SpoIIIE PF01580.18 gi|433593242|ref|YP_007282728.1| - 0.41 9.9 3.1 0.97 8.7 0.0 2.8 4 0 0 4 4 4 0 FtsK/SpoIIIE family Rsa3 PF14615.6 gi|433593243|ref|YP_007282729.1| - 0.029 13.9 0.0 0.074 12.6 0.0 1.7 2 0 0 2 2 2 0 Ribosome-assembly protein 3 TraG-D_C PF12696.7 gi|433593244|ref|YP_007282730.1| - 0.0004 20.4 0.0 0.001 19.1 0.0 1.7 1 0 0 1 1 1 1 TraM recognition site of TraD and TraG AAA_22 PF13401.6 gi|433593244|ref|YP_007282730.1| - 0.0011 19.2 1.3 0.17 12.2 0.5 3.5 2 1 1 3 3 3 1 AAA domain Zot PF05707.12 gi|433593244|ref|YP_007282730.1| - 0.013 15.1 0.2 0.18 11.4 0.1 2.3 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) AAA_16 PF13191.6 gi|433593244|ref|YP_007282730.1| - 0.022 15.1 6.1 0.076 13.4 0.2 3.7 4 0 0 4 4 4 0 AAA ATPase domain DUF3487 PF11990.8 gi|433593244|ref|YP_007282730.1| - 0.2 11.6 0.9 0.41 10.5 0.9 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3487) DUF2304 PF10066.9 gi|433593248|ref|YP_007282734.1| - 0.026 14.7 0.3 0.82 9.9 0.0 2.0 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2304) Phage_int_SAM_5 PF13102.6 gi|433593249|ref|YP_007282735.1| - 1.6e-05 25.1 0.0 4.6e-05 23.7 0.0 1.8 1 1 0 1 1 1 1 Phage integrase SAM-like domain Phage_int_SAM_1 PF02899.17 gi|433593249|ref|YP_007282735.1| - 0.00035 20.8 0.4 0.036 14.4 0.0 3.6 4 0 0 4 4 4 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.6 gi|433593249|ref|YP_007282735.1| - 0.12 12.9 0.0 0.22 12.0 0.0 1.4 1 0 0 1 1 1 0 Phage integrase, N-terminal SAM-like domain SPDY PF03771.16 gi|433593250|ref|YP_007282736.1| - 0.032 14.1 1.4 0.032 14.1 1.4 2.0 2 1 1 3 3 3 0 Domain of unknown function (DUF317) Penicillinase_R PF03965.16 gi|433593251|ref|YP_007282737.1| - 0.0023 18.3 0.0 0.0051 17.2 0.0 1.7 1 1 0 1 1 1 1 Penicillinase repressor GntR PF00392.21 gi|433593251|ref|YP_007282737.1| - 0.0069 16.0 0.0 0.017 14.8 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family EAP30 PF04157.16 gi|433593251|ref|YP_007282737.1| - 0.015 14.6 1.0 0.023 14.0 0.1 1.7 2 0 0 2 2 2 0 EAP30/Vps36 family GPP34 PF05719.11 gi|433593251|ref|YP_007282737.1| - 0.015 15.4 1.1 0.028 14.5 0.6 1.4 1 1 0 1 1 1 0 Golgi phosphoprotein 3 (GPP34) TrmB PF01978.19 gi|433593251|ref|YP_007282737.1| - 0.026 14.4 0.0 0.048 13.6 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DUF4423 PF14394.6 gi|433593251|ref|YP_007282737.1| - 0.042 13.6 0.0 0.44 10.2 0.0 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4423) SMC_Nse1 PF07574.13 gi|433593251|ref|YP_007282737.1| - 0.045 13.6 0.6 0.16 11.9 0.1 1.9 2 1 0 2 2 2 0 Nse1 non-SMC component of SMC5-6 complex HTH_20 PF12840.7 gi|433593251|ref|YP_007282737.1| - 0.069 13.2 0.1 4.9 7.3 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain PspB PF06667.12 gi|433593251|ref|YP_007282737.1| - 3.2 7.9 5.4 24 5.0 0.1 2.7 3 0 0 3 3 3 0 Phage shock protein B DDE_Tnp_1 PF01609.21 gi|433593253|ref|YP_007282739.1| - 3.4e-09 36.7 0.0 5e-09 36.1 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.11 gi|433593253|ref|YP_007282739.1| - 0.005 16.8 0.0 0.014 15.4 0.0 1.8 1 0 0 1 1 1 1 Transposase domain (DUF772) SymE_toxin PF08845.10 gi|433593254|ref|YP_007282740.1| - 0.0079 16.2 0.0 0.0081 16.2 0.0 1.2 1 0 0 1 1 1 1 Toxin SymE, type I toxin-antitoxin system MazE_antitoxin PF04014.18 gi|433593254|ref|YP_007282740.1| - 0.012 15.5 0.1 0.017 15.1 0.1 1.2 1 0 0 1 1 1 0 Antidote-toxin recognition MazE, bacterial antitoxin AA_permease_2 PF13520.6 gi|433593256|ref|YP_007282742.1| - 6.4e-56 190.0 46.9 7.9e-56 189.7 46.9 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|433593256|ref|YP_007282742.1| - 4.8e-44 150.7 41.6 5.9e-44 150.4 41.6 1.1 1 0 0 1 1 1 1 Amino acid permease Spore_permease PF03845.13 gi|433593256|ref|YP_007282742.1| - 7.8e-07 28.2 8.1 1.7e-06 27.1 8.1 1.5 1 0 0 1 1 1 1 Spore germination protein AA_permease_C PF13906.6 gi|433593256|ref|YP_007282742.1| - 6.7e-05 22.9 6.9 6.7e-05 22.9 6.9 3.8 5 0 0 5 5 5 1 C-terminus of AA_permease TrkA_N PF02254.18 gi|433593257|ref|YP_007282743.1| - 2.2e-23 82.7 0.3 3.9e-23 81.9 0.3 1.4 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.21 gi|433593257|ref|YP_007282743.1| - 2.6e-05 24.0 0.1 0.00011 22.0 0.1 2.1 2 0 0 2 2 2 1 TrkA-C domain UDPG_MGDP_dh_N PF03721.14 gi|433593257|ref|YP_007282743.1| - 0.00013 21.6 0.2 0.00034 20.2 0.0 1.7 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Pyr_redox_2 PF07992.14 gi|433593257|ref|YP_007282743.1| - 0.0003 20.1 0.1 0.00034 19.9 0.1 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_7 PF13241.6 gi|433593257|ref|YP_007282743.1| - 0.0016 18.8 0.1 0.0031 17.9 0.0 1.4 1 1 0 1 1 1 1 Putative NAD(P)-binding NAD_binding_10 PF13460.6 gi|433593257|ref|YP_007282743.1| - 0.0045 16.9 0.3 0.012 15.5 0.2 1.7 1 1 1 2 2 2 1 NAD(P)H-binding NAD_binding_8 PF13450.6 gi|433593257|ref|YP_007282743.1| - 0.0092 16.2 0.0 0.065 13.5 0.0 2.3 3 0 0 3 3 3 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.27 gi|433593257|ref|YP_007282743.1| - 0.011 16.2 0.1 0.026 15.0 0.1 1.6 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|433593257|ref|YP_007282743.1| - 0.012 14.9 0.0 0.013 14.8 0.0 1.2 1 0 0 1 1 1 0 FAD binding domain Glyco_transf_4 PF13439.6 gi|433593257|ref|YP_007282743.1| - 0.037 14.0 0.2 0.19 11.7 0.1 2.1 1 1 0 1 1 1 0 Glycosyltransferase Family 4 Epimerase PF01370.21 gi|433593257|ref|YP_007282743.1| - 0.047 13.1 0.2 0.088 12.3 0.1 1.5 1 1 1 2 2 2 0 NAD dependent epimerase/dehydratase family B12-binding PF02310.19 gi|433593257|ref|YP_007282743.1| - 0.077 13.0 2.0 0.67 10.0 0.1 2.6 1 1 0 2 2 2 0 B12 binding domain Zip PF02535.22 gi|433593258|ref|YP_007282744.1| - 2.4e-15 56.6 21.2 1.5e-14 53.9 7.7 2.9 1 1 1 2 2 2 2 ZIP Zinc transporter Aconitase PF00330.20 gi|433593259|ref|YP_007282745.1| - 2.7e-170 567.4 0.0 3.3e-170 567.1 0.0 1.1 1 0 0 1 1 1 1 Aconitase family (aconitate hydratase) Aconitase_C PF00694.19 gi|433593259|ref|YP_007282745.1| - 3.2e-42 143.9 0.0 6.6e-42 142.9 0.0 1.5 1 0 0 1 1 1 1 Aconitase C-terminal domain Usp PF00582.26 gi|433593261|ref|YP_007282747.1| - 2.7e-21 76.5 2.0 4.2e-21 75.9 2.0 1.3 1 1 0 1 1 1 1 Universal stress protein family Na_Ca_ex PF01699.24 gi|433593262|ref|YP_007282748.1| - 1.1e-22 80.6 31.8 2.2e-12 47.2 9.2 2.1 2 0 0 2 2 2 2 Sodium/calcium exchanger protein Spc7 PF08317.11 gi|433593264|ref|YP_007282750.1| - 2.5e-06 26.6 48.4 0.0025 16.8 16.1 4.1 1 1 4 5 5 5 3 Spc7 kinetochore protein TPR_MLP1_2 PF07926.12 gi|433593264|ref|YP_007282750.1| - 3.4e-06 27.1 50.4 0.013 15.5 9.1 5.5 2 2 2 4 4 4 3 TPR/MLP1/MLP2-like protein GAS PF13851.6 gi|433593264|ref|YP_007282750.1| - 3.8e-06 26.4 40.7 0.026 13.9 17.4 4.1 2 2 1 3 3 3 3 Growth-arrest specific micro-tubule binding TMF_TATA_bd PF12325.8 gi|433593264|ref|YP_007282750.1| - 5.1e-06 26.7 52.2 0.016 15.4 2.0 5.3 3 2 2 5 5 5 3 TATA element modulatory factor 1 TATA binding AAA_13 PF13166.6 gi|433593264|ref|YP_007282750.1| - 1.4e-05 24.0 28.7 0.00017 20.4 12.9 3.1 1 1 2 3 3 3 2 AAA domain CENP-F_leu_zip PF10473.9 gi|433593264|ref|YP_007282750.1| - 1.5e-05 25.1 55.3 0.017 15.2 9.1 5.2 1 1 4 5 5 5 3 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 AAA_23 PF13476.6 gi|433593264|ref|YP_007282750.1| - 2.3e-05 25.0 39.1 1.1e+02 3.2 39.1 3.9 1 1 0 1 1 1 0 AAA domain FlaC_arch PF05377.11 gi|433593264|ref|YP_007282750.1| - 5.3e-05 23.5 37.7 0.27 11.7 0.5 8.4 5 2 1 7 7 7 1 Flagella accessory protein C (FlaC) ATG16 PF08614.11 gi|433593264|ref|YP_007282750.1| - 6e-05 23.4 58.4 0.0012 19.1 24.9 4.5 2 2 1 3 3 3 1 Autophagy protein 16 (ATG16) Uso1_p115_C PF04871.13 gi|433593264|ref|YP_007282750.1| - 0.00044 20.6 47.6 0.048 14.0 9.9 4.5 2 2 3 5 5 4 3 Uso1 / p115 like vesicle tethering protein, C terminal region Atg14 PF10186.9 gi|433593264|ref|YP_007282750.1| - 0.00076 18.7 35.2 0.11 11.5 12.2 2.8 1 1 1 2 2 2 2 Vacuolar sorting 38 and autophagy-related subunit 14 DUF3584 PF12128.8 gi|433593264|ref|YP_007282750.1| - 0.00091 16.9 50.1 0.6 7.6 20.2 3.5 1 1 1 3 3 3 2 Protein of unknown function (DUF3584) Baculo_PEP_C PF04513.12 gi|433593264|ref|YP_007282750.1| - 0.00096 19.2 19.6 0.2 11.7 4.3 5.0 3 2 2 5 5 4 1 Baculovirus polyhedron envelope protein, PEP, C terminus BLOC1_2 PF10046.9 gi|433593264|ref|YP_007282750.1| - 0.0011 19.2 26.9 0.17 12.2 1.9 5.8 3 2 2 5 5 5 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 CALCOCO1 PF07888.11 gi|433593264|ref|YP_007282750.1| - 0.0022 16.9 22.4 0.0022 16.9 22.4 2.2 2 0 0 2 2 2 1 Calcium binding and coiled-coil domain (CALCOCO1) like FTA4 PF13093.6 gi|433593264|ref|YP_007282750.1| - 0.0022 17.9 37.7 1.8 8.4 11.1 5.1 2 2 3 5 5 5 1 Kinetochore complex Fta4 of Sim4 subunit, or CENP-50 Prefoldin_2 PF01920.20 gi|433593264|ref|YP_007282750.1| - 0.0028 17.6 47.4 0.11 12.5 2.5 7.6 2 2 4 6 6 6 2 Prefoldin subunit Seryl_tRNA_N PF02403.22 gi|433593264|ref|YP_007282750.1| - 0.0051 17.0 9.5 0.0051 17.0 9.5 4.9 3 2 2 5 5 4 1 Seryl-tRNA synthetase N-terminal domain Prefoldin PF02996.17 gi|433593264|ref|YP_007282750.1| - 0.0078 16.1 39.2 1.1 9.2 1.4 7.2 2 2 6 8 8 8 4 Prefoldin subunit DUF641 PF04859.12 gi|433593264|ref|YP_007282750.1| - 0.0081 16.5 3.9 0.0081 16.5 3.9 4.4 1 1 3 4 4 4 1 Plant protein of unknown function (DUF641) NPV_P10 PF05531.12 gi|433593264|ref|YP_007282750.1| - 0.0082 16.6 19.5 0.57 10.7 0.7 6.3 3 2 3 6 6 6 1 Nucleopolyhedrovirus P10 protein Fib_alpha PF08702.10 gi|433593264|ref|YP_007282750.1| - 0.009 16.2 3.4 0.009 16.2 3.4 4.1 3 1 1 4 4 4 1 Fibrinogen alpha/beta chain family TMF_DNA_bd PF12329.8 gi|433593264|ref|YP_007282750.1| - 0.015 15.3 3.0 0.015 15.3 3.0 7.0 4 2 4 8 8 6 0 TATA element modulatory factor 1 DNA binding COG2 PF06148.11 gi|433593264|ref|YP_007282750.1| - 0.021 14.9 2.7 0.021 14.9 2.7 5.3 1 1 3 5 5 5 0 COG (conserved oligomeric Golgi) complex component, COG2 XhlA PF10779.9 gi|433593264|ref|YP_007282750.1| - 0.027 14.7 3.7 0.027 14.7 3.7 6.6 6 1 0 6 6 6 0 Haemolysin XhlA Laminin_II PF06009.12 gi|433593264|ref|YP_007282750.1| - 0.028 14.4 26.6 0.99 9.4 3.8 4.9 3 2 2 6 6 5 0 Laminin Domain II MscS_porin PF12795.7 gi|433593264|ref|YP_007282750.1| - 0.035 13.6 47.8 0.094 12.2 19.2 4.1 1 1 3 4 4 4 0 Mechanosensitive ion channel porin domain AAA_21 PF13304.6 gi|433593264|ref|YP_007282750.1| - 0.035 13.9 6.9 0.056 13.3 2.6 2.6 2 2 0 2 2 2 0 AAA domain, putative AbiEii toxin, Type IV TA system DUF5082 PF16888.5 gi|433593264|ref|YP_007282750.1| - 0.036 14.3 32.4 0.77 10.0 6.1 5.5 2 2 1 3 3 3 0 Domain of unknown function (DUF5082) DUF1664 PF07889.12 gi|433593264|ref|YP_007282750.1| - 0.044 13.8 25.5 0.63 10.1 1.3 5.3 3 2 1 5 5 5 0 Protein of unknown function (DUF1664) APG6_N PF17675.1 gi|433593264|ref|YP_007282750.1| - 0.046 14.3 70.7 0.58 10.7 20.0 4.9 1 1 3 4 4 4 0 Apg6 coiled-coil region ABC_tran_CTD PF16326.5 gi|433593264|ref|YP_007282750.1| - 0.048 13.9 60.3 0.11 12.8 9.9 7.5 2 2 6 8 8 8 0 ABC transporter C-terminal domain DUF2730 PF10805.8 gi|433593264|ref|YP_007282750.1| - 0.067 13.3 29.0 3.1 7.9 3.4 5.5 3 1 2 5 5 5 0 Protein of unknown function (DUF2730) FapA PF03961.13 gi|433593264|ref|YP_007282750.1| - 0.072 11.7 31.1 0.7 8.4 2.8 4.1 1 1 3 4 4 4 0 Flagellar Assembly Protein A Tropomyosin_1 PF12718.7 gi|433593264|ref|YP_007282750.1| - 0.077 13.1 61.4 0.9 9.7 9.6 4.3 2 2 2 4 4 4 0 Tropomyosin like DegS PF05384.11 gi|433593264|ref|YP_007282750.1| - 0.08 12.4 41.1 0.032 13.7 15.0 5.5 4 2 0 5 5 5 0 Sensor protein DegS Spc24 PF08286.11 gi|433593264|ref|YP_007282750.1| - 0.11 12.8 50.1 1.2 9.5 1.6 7.7 2 2 6 8 8 8 0 Spc24 subunit of Ndc80 EzrA PF06160.12 gi|433593264|ref|YP_007282750.1| - 0.11 10.6 35.4 0.71 8.0 14.7 2.6 1 1 0 2 2 2 0 Septation ring formation regulator, EzrA DUF4407 PF14362.6 gi|433593264|ref|YP_007282750.1| - 0.15 11.4 41.0 16 4.7 13.5 3.6 1 1 1 2 2 2 0 Domain of unknown function (DUF4407) Phage_GP20 PF06810.11 gi|433593264|ref|YP_007282750.1| - 0.18 11.6 38.2 0.63 9.8 3.9 5.1 2 2 3 5 5 5 0 Phage minor structural protein GP20 ZapB PF06005.12 gi|433593264|ref|YP_007282750.1| - 0.27 11.7 51.0 2.8 8.5 0.2 6.9 2 2 3 5 5 5 0 Cell division protein ZapB Exonuc_VII_L PF02601.15 gi|433593264|ref|YP_007282750.1| - 0.29 10.7 26.6 0.41 10.2 9.4 2.7 1 1 1 2 2 2 0 Exonuclease VII, large subunit HemX PF04375.14 gi|433593264|ref|YP_007282750.1| - 0.36 10.1 28.3 0.042 13.1 2.5 4.5 2 2 3 5 5 5 0 HemX, putative uroporphyrinogen-III C-methyltransferase HOOK PF05622.12 gi|433593264|ref|YP_007282750.1| - 0.36 8.9 50.6 0.18 9.9 12.1 2.7 1 1 1 2 2 2 0 HOOK protein Sec34 PF04136.15 gi|433593264|ref|YP_007282750.1| - 0.39 10.6 23.9 2.4 8.0 0.8 5.0 2 2 3 5 5 5 0 Sec34-like family DUF4686 PF15742.5 gi|433593264|ref|YP_007282750.1| - 0.42 9.7 33.4 0.011 14.9 10.9 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4686) TMPIT PF07851.13 gi|433593264|ref|YP_007282750.1| - 0.45 9.7 16.0 0.23 10.7 3.0 3.0 2 2 1 3 3 3 0 TMPIT-like protein DUF745 PF05335.13 gi|433593264|ref|YP_007282750.1| - 0.47 10.2 15.8 0.082 12.6 2.0 3.6 2 2 1 3 3 3 0 Protein of unknown function (DUF745) DUF724 PF05266.14 gi|433593264|ref|YP_007282750.1| - 0.53 10.1 29.0 0.18 11.6 9.2 3.7 2 2 2 4 4 4 0 Protein of unknown function (DUF724) Fez1 PF06818.15 gi|433593264|ref|YP_007282750.1| - 0.56 10.6 46.7 0.72 10.3 4.3 4.0 1 1 3 4 4 4 0 Fez1 DUF4201 PF13870.6 gi|433593264|ref|YP_007282750.1| - 0.72 9.6 38.3 0.42 10.3 2.8 5.5 2 2 2 4 4 4 0 Domain of unknown function (DUF4201) DUF3450 PF11932.8 gi|433593264|ref|YP_007282750.1| - 0.74 9.1 40.3 1.8 7.8 1.1 4.5 1 1 3 4 4 4 0 Protein of unknown function (DUF3450) WXG100 PF06013.12 gi|433593264|ref|YP_007282750.1| - 0.76 10.0 20.2 54 4.1 0.0 7.9 4 2 5 9 9 9 0 Proteins of 100 residues with WXG Fmp27_WPPW PF10359.9 gi|433593264|ref|YP_007282750.1| - 1.2 8.0 36.5 0.95 8.2 3.2 4.1 1 1 3 4 4 4 0 RNA pol II promoter Fmp27 protein domain DASH_Hsk3 PF08227.11 gi|433593264|ref|YP_007282750.1| - 1.5 9.2 6.2 12 6.3 0.0 4.7 5 0 0 5 5 3 0 DASH complex subunit Hsk3 like HMMR_N PF15905.5 gi|433593264|ref|YP_007282750.1| - 1.6 8.2 40.3 0.67 9.4 16.8 2.9 2 2 0 2 2 2 0 Hyaluronan mediated motility receptor N-terminal DivIC PF04977.15 gi|433593264|ref|YP_007282750.1| - 1.8 8.4 54.1 0.44 10.4 2.0 7.8 4 2 4 8 8 8 0 Septum formation initiator Fzo_mitofusin PF04799.13 gi|433593264|ref|YP_007282750.1| - 2.4 7.7 25.2 4.6 6.8 0.6 5.7 2 1 5 7 7 7 0 fzo-like conserved region Jnk-SapK_ap_N PF09744.9 gi|433593264|ref|YP_007282750.1| - 2.8 8.2 57.2 2.5 8.3 1.9 5.3 1 1 4 5 5 5 0 JNK_SAPK-associated protein-1 CENP-H PF05837.12 gi|433593264|ref|YP_007282750.1| - 2.8 8.4 38.0 0.85 10.1 4.0 4.9 2 2 2 4 4 4 0 Centromere protein H (CENP-H) Prominin PF05478.11 gi|433593264|ref|YP_007282750.1| - 3 5.7 10.6 2.4 6.0 1.9 2.2 2 0 0 2 2 2 0 Prominin ApoO PF09769.9 gi|433593264|ref|YP_007282750.1| - 3 7.8 8.1 18 5.3 0.2 4.4 3 1 1 4 4 4 0 Apolipoprotein O T3SSipB PF16535.5 gi|433593264|ref|YP_007282750.1| - 3.2 8.2 20.1 0.86 10.1 2.0 4.5 1 1 3 4 4 4 0 Type III cell invasion protein SipB DHR10 PF18595.1 gi|433593264|ref|YP_007282750.1| - 3.6 7.7 64.2 0.29 11.2 2.4 6.4 2 2 4 6 6 6 0 Designed helical repeat protein 10 domain Flagellin_C PF00700.21 gi|433593264|ref|YP_007282750.1| - 3.8 7.9 6.0 48 4.4 0.3 3.8 3 0 0 3 3 3 0 Bacterial flagellin C-terminal helical region Cas_DxTHG PF09455.10 gi|433593264|ref|YP_007282750.1| - 4.1 6.9 7.7 8.6 5.8 2.8 2.5 1 1 2 3 3 3 0 CRISPR-associated (Cas) DxTHG family UPF0242 PF06785.11 gi|433593264|ref|YP_007282750.1| - 5.1 7.1 47.6 0.45 10.6 12.9 3.9 1 1 4 5 5 5 0 Uncharacterised protein family (UPF0242) N-terminus FlxA PF14282.6 gi|433593264|ref|YP_007282750.1| - 5.5 7.0 23.4 15 5.7 2.5 5.6 2 2 4 6 6 6 0 FlxA-like protein Rab5-bind PF09311.11 gi|433593264|ref|YP_007282750.1| - 6.3 6.1 42.6 0.17 11.2 9.9 4.2 1 1 2 4 4 4 0 Rabaptin-like protein YabA PF06156.13 gi|433593264|ref|YP_007282750.1| - 7 7.3 28.7 5.6 7.7 1.0 5.4 2 2 2 4 4 4 0 Initiation control protein YabA MCPsignal PF00015.21 gi|433593264|ref|YP_007282750.1| - 7.8 6.3 7.7 8.5 6.2 0.1 3.5 2 2 2 4 4 4 0 Methyl-accepting chemotaxis protein (MCP) signalling domain YqjK PF13997.6 gi|433593264|ref|YP_007282750.1| - 7.9 6.8 7.8 3.6 7.9 0.9 3.6 3 1 2 5 5 3 0 YqjK-like protein DUF2203 PF09969.9 gi|433593264|ref|YP_007282750.1| - 8 7.2 29.7 18 6.1 5.5 4.8 2 2 2 4 4 4 0 Uncharacterized conserved protein (DUF2203) Bacillus_HBL PF05791.11 gi|433593264|ref|YP_007282750.1| - 8.1 6.2 13.2 1.4 8.7 0.3 4.3 3 2 2 5 5 5 0 Bacillus haemolytic enterotoxin (HBL) eIF3_N PF09440.10 gi|433593264|ref|YP_007282750.1| - 8.7 6.8 22.5 3.1 8.2 2.1 4.8 1 1 3 5 5 5 0 eIF3 subunit 6 N terminal domain MAD PF05557.13 gi|433593264|ref|YP_007282750.1| - 9.4 4.5 45.2 0.61 8.4 16.5 2.9 2 1 1 3 3 3 0 Mitotic checkpoint protein DDE_Tnp_1 PF01609.21 gi|433593265|ref|YP_007282751.1| - 1.3e-15 57.6 2.2 6.1e-15 55.5 2.2 1.8 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_2 PF13586.6 gi|433593265|ref|YP_007282751.1| - 0.00038 20.8 0.0 0.0014 19.0 0.0 2.0 2 1 0 2 2 2 1 Transposase DDE domain OAS1_C PF10421.9 gi|433593265|ref|YP_007282751.1| - 0.024 14.2 0.0 0.041 13.4 0.0 1.3 1 0 0 1 1 1 0 2'-5'-oligoadenylate synthetase 1, domain 2, C-terminus TBP PF00352.21 gi|433593266|ref|YP_007282752.1| - 7.2e-53 176.5 0.0 1.4e-25 89.0 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.8 gi|433593266|ref|YP_007282752.1| - 3.5e-06 27.0 0.0 0.034 14.3 0.0 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) Iso_dh PF00180.20 gi|433593267|ref|YP_007282753.1| - 1.8e-109 366.1 0.0 2.2e-109 365.8 0.0 1.1 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase Aconitase PF00330.20 gi|433593269|ref|YP_007282755.1| - 4.5e-105 352.3 0.3 2.9e-103 346.4 0.3 2.3 1 1 0 1 1 1 1 Aconitase family (aconitate hydratase) Aconitase_C PF00694.19 gi|433593269|ref|YP_007282755.1| - 1.7e-20 73.7 0.0 3.3e-20 72.7 0.0 1.4 1 0 0 1 1 1 1 Aconitase C-terminal domain DUF521 PF04412.13 gi|433593269|ref|YP_007282755.1| - 0.0053 15.5 0.0 0.0081 14.9 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF521) Barwin PF00967.17 gi|433593269|ref|YP_007282755.1| - 0.045 13.6 0.0 0.1 12.5 0.0 1.6 1 0 0 1 1 1 0 Barwin family DUF5317 PF17248.2 gi|433593270|ref|YP_007282756.1| - 0.2 11.7 0.0 0.2 11.7 0.0 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5317) Hist_deacetyl PF00850.19 gi|433593271|ref|YP_007282757.1| - 3.7e-79 266.4 0.0 5.6e-79 265.8 0.0 1.3 1 0 0 1 1 1 1 Histone deacetylase domain MmlI PF09448.10 gi|433593271|ref|YP_007282757.1| - 0.13 12.7 0.0 0.56 10.7 0.0 2.0 1 1 0 1 1 1 0 Methylmuconolactone methyl-isomerase UPF0058 PF01893.16 gi|433593272|ref|YP_007282758.1| - 1.7e-15 57.1 0.1 1.9e-15 56.9 0.1 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0058 DDE_Tnp_IS240 PF13610.6 gi|433593273|ref|YP_007282759.1| - 2.4e-14 53.7 0.0 3.3e-14 53.3 0.0 1.2 1 0 0 1 1 1 1 DDE domain rve PF00665.26 gi|433593273|ref|YP_007282759.1| - 0.019 15.1 0.1 0.039 14.2 0.1 1.5 1 0 0 1 1 1 0 Integrase core domain AAA_22 PF13401.6 gi|433593273|ref|YP_007282759.1| - 0.066 13.5 0.4 0.15 12.4 0.4 1.7 1 1 1 2 2 2 0 AAA domain Zip PF02535.22 gi|433593274|ref|YP_007282760.1| - 1.3e-19 70.6 12.2 1.3e-14 54.2 6.3 2.0 1 1 1 2 2 2 2 ZIP Zinc transporter YhhN PF07947.14 gi|433593274|ref|YP_007282760.1| - 0.15 11.7 0.2 0.15 11.7 0.2 2.5 2 2 0 2 2 2 0 YhhN family CTV_P6 PF06706.11 gi|433593274|ref|YP_007282760.1| - 1.6 8.5 4.1 8.5 6.2 0.1 2.9 2 0 0 2 2 2 0 Citrus tristeza virus 6-kDa protein Form_Nir_trans PF01226.17 gi|433593275|ref|YP_007282761.1| - 3e-43 147.8 20.9 3.4e-43 147.7 20.9 1.0 1 0 0 1 1 1 1 Formate/nitrite transporter DUF202 PF02656.15 gi|433593276|ref|YP_007282762.1| - 1e-10 41.9 4.4 1.6e-10 41.2 4.4 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF202) DUF2721 PF11026.8 gi|433593276|ref|YP_007282762.1| - 0.023 14.6 0.6 0.028 14.3 0.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2721) Phage_holin_3_6 PF07332.11 gi|433593276|ref|YP_007282762.1| - 0.024 14.7 3.7 0.034 14.2 3.7 1.3 1 1 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III UPF0029 PF01205.19 gi|433593277|ref|YP_007282763.1| - 4.1e-28 97.8 0.0 5.9e-28 97.3 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized protein family UPF0029 DUF1949 PF09186.11 gi|433593277|ref|YP_007282763.1| - 7.4e-11 41.8 1.8 9.7e-11 41.4 0.2 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF1949) EFG_C PF00679.24 gi|433593277|ref|YP_007282763.1| - 0.014 15.4 0.0 0.028 14.4 0.0 1.4 1 0 0 1 1 1 0 Elongation factor G C-terminus PTA_PTB PF01515.19 gi|433593278|ref|YP_007282764.1| - 8.2e-94 314.5 0.1 1.1e-93 314.0 0.1 1.2 1 0 0 1 1 1 1 Phosphate acetyl/butaryl transferase malic PF00390.19 gi|433593278|ref|YP_007282764.1| - 3.9e-29 101.7 0.0 8.3e-27 94.2 0.0 2.4 1 1 0 1 1 1 1 Malic enzyme, N-terminal domain Malic_M PF03949.15 gi|433593278|ref|YP_007282764.1| - 9.4e-21 74.2 0.2 2.6e-20 72.8 0.2 1.7 1 1 0 1 1 1 1 Malic enzyme, NAD binding domain DUF1876 PF08962.11 gi|433593278|ref|YP_007282764.1| - 0.11 12.5 0.4 0.45 10.5 0.4 2.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1876) zinc_ribbon_4 PF13717.6 gi|433593279|ref|YP_007282765.1| - 0.0098 15.8 0.4 0.32 11.0 0.0 2.1 2 0 0 2 2 2 2 zinc-ribbon domain DNA_RNApol_7kD PF03604.13 gi|433593279|ref|YP_007282765.1| - 0.046 13.4 0.1 0.11 12.2 0.0 1.7 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit ILVD_EDD PF00920.21 gi|433593280|ref|YP_007282766.1| - 7e-196 651.8 0.2 7.9e-196 651.6 0.2 1.0 1 0 0 1 1 1 1 Dehydratase family DGC PF08859.11 gi|433593280|ref|YP_007282766.1| - 0.077 13.1 0.4 1.1 9.4 0.0 2.4 2 0 0 2 2 2 0 DGC domain CitMHS PF03600.16 gi|433593281|ref|YP_007282767.1| - 3e-30 105.5 33.3 3e-30 105.5 33.3 1.4 1 1 1 2 2 2 1 Citrate transporter ArsB PF02040.15 gi|433593281|ref|YP_007282767.1| - 1.9e-07 30.8 19.3 8.2e-07 28.7 19.3 1.9 1 1 0 1 1 1 1 Arsenical pump membrane protein Phage_holin_5_1 PF06946.11 gi|433593281|ref|YP_007282767.1| - 0.0012 19.2 1.4 0.0047 17.3 0.6 2.4 1 1 1 2 2 2 1 Bacteriophage A118-like holin, Hol118 AAA_31 PF13614.6 gi|433593283|ref|YP_007282769.1| - 3.3e-28 98.8 0.0 5e-28 98.2 0.0 1.3 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|433593283|ref|YP_007282769.1| - 1.2e-14 54.4 0.0 2.2e-14 53.6 0.0 1.4 2 0 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain CBP_BcsQ PF06564.12 gi|433593283|ref|YP_007282769.1| - 1.5e-11 44.2 0.0 1.3e-10 41.2 0.0 2.0 1 1 1 2 2 2 1 Cellulose biosynthesis protein BcsQ ParA PF10609.9 gi|433593283|ref|YP_007282769.1| - 2.5e-10 40.2 0.0 1.3e-08 34.6 0.0 2.1 2 0 0 2 2 2 1 NUBPL iron-transfer P-loop NTPase ArsA_ATPase PF02374.15 gi|433593283|ref|YP_007282769.1| - 8.3e-07 28.5 0.0 1.6e-06 27.5 0.0 1.5 1 0 0 1 1 1 1 Anion-transporting ATPase MipZ PF09140.11 gi|433593283|ref|YP_007282769.1| - 5.5e-06 25.9 0.2 0.00084 18.7 0.1 2.2 2 0 0 2 2 2 2 ATPase MipZ Fer4_NifH PF00142.18 gi|433593283|ref|YP_007282769.1| - 2.1e-05 24.1 0.0 0.0019 17.7 0.0 2.3 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family VirC1 PF07015.11 gi|433593283|ref|YP_007282769.1| - 0.0031 16.8 0.1 0.029 13.7 0.0 2.1 2 0 0 2 2 2 1 VirC1 protein CLP1_P PF16575.5 gi|433593283|ref|YP_007282769.1| - 0.012 15.4 0.0 0.023 14.5 0.0 1.5 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop AAA_25 PF13481.6 gi|433593283|ref|YP_007282769.1| - 0.032 13.8 0.0 0.075 12.6 0.0 1.6 2 0 0 2 2 2 0 AAA domain MeaB PF03308.16 gi|433593283|ref|YP_007282769.1| - 0.071 12.1 0.0 0.11 11.4 0.0 1.2 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB APS_kinase PF01583.20 gi|433593283|ref|YP_007282769.1| - 0.075 12.9 0.0 0.14 12.0 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_18 PF13238.6 gi|433593283|ref|YP_007282769.1| - 0.083 13.4 0.0 0.76 10.3 0.0 2.1 2 0 0 2 2 2 0 AAA domain UvrD-helicase PF00580.21 gi|433593284|ref|YP_007282770.1| - 2.6e-61 207.9 0.0 5.8e-61 206.7 0.0 1.6 1 1 0 1 1 1 1 UvrD/REP helicase N-terminal domain AAA_19 PF13245.6 gi|433593284|ref|YP_007282770.1| - 1.3e-29 103.5 0.0 1.8e-28 99.7 0.0 2.5 1 1 0 1 1 1 1 AAA domain UvrD_C PF13361.6 gi|433593284|ref|YP_007282770.1| - 1.1e-23 84.2 0.0 5.3e-22 78.7 0.0 2.3 1 1 0 1 1 1 1 UvrD-like helicase C-terminal domain PDDEXK_1 PF12705.7 gi|433593284|ref|YP_007282770.1| - 1.8e-10 41.2 0.8 1.5e-09 38.2 0.0 2.7 2 0 0 2 2 2 1 PD-(D/E)XK nuclease superfamily UvrD_C_2 PF13538.6 gi|433593284|ref|YP_007282770.1| - 3.3e-10 39.6 0.2 0.001 18.9 0.0 2.9 2 0 0 2 2 2 2 UvrD-like helicase C-terminal domain AAA_30 PF13604.6 gi|433593284|ref|YP_007282770.1| - 9.5e-10 38.5 0.5 2.5e-05 24.1 0.0 2.8 2 0 0 2 2 2 2 AAA domain Viral_helicase1 PF01443.18 gi|433593284|ref|YP_007282770.1| - 0.00016 21.5 0.3 7.2 6.3 0.0 4.2 4 0 0 4 4 4 1 Viral (Superfamily 1) RNA helicase AAA_22 PF13401.6 gi|433593284|ref|YP_007282770.1| - 0.0022 18.3 0.1 3.2 8.0 0.0 2.8 2 0 0 2 2 2 2 AAA domain DUF2800 PF10926.8 gi|433593284|ref|YP_007282770.1| - 0.009 15.3 0.0 0.021 14.1 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF2800) DEAD PF00270.29 gi|433593284|ref|YP_007282770.1| - 0.036 13.8 0.0 0.086 12.6 0.0 1.6 1 0 0 1 1 1 0 DEAD/DEAH box helicase AAA_16 PF13191.6 gi|433593284|ref|YP_007282770.1| - 0.042 14.2 10.0 0.68 10.3 0.5 3.5 2 1 1 3 3 3 0 AAA ATPase domain PDDEXK_1 PF12705.7 gi|433593285|ref|YP_007282771.1| - 4.9e-32 111.8 0.0 7.7e-31 107.9 0.0 2.6 2 1 0 2 2 2 1 PD-(D/E)XK nuclease superfamily Exonuc_V_gamma PF04257.14 gi|433593285|ref|YP_007282771.1| - 4.5e-08 31.8 0.0 0.00066 18.0 0.0 2.1 2 0 0 2 2 2 2 Exodeoxyribonuclease V, gamma subunit PilN PF05137.13 gi|433593285|ref|YP_007282771.1| - 0.18 11.9 0.0 0.41 10.8 0.0 1.6 1 0 0 1 1 1 0 Fimbrial assembly protein (PilN) DUF1819 PF08849.11 gi|433593286|ref|YP_007282772.1| - 5.5e-06 26.3 0.0 7.7e-06 25.8 0.0 1.1 1 0 0 1 1 1 1 Putative inner membrane protein (DUF1819) ABC_tran PF00005.27 gi|433593287|ref|YP_007282773.1| - 0.05 14.1 0.3 0.55 10.7 0.0 2.9 3 0 0 3 3 3 0 ABC transporter DUF1515 PF07439.11 gi|433593287|ref|YP_007282773.1| - 0.15 12.1 5.6 0.15 12.1 0.6 3.1 3 0 0 3 3 3 0 Protein of unknown function (DUF1515) FlaC_arch PF05377.11 gi|433593287|ref|YP_007282773.1| - 0.6 10.5 5.2 8.9 6.8 1.1 4.1 4 0 0 4 4 4 0 Flagella accessory protein C (FlaC) AAA_16 PF13191.6 gi|433593287|ref|YP_007282773.1| - 9.9 6.5 13.7 1.6 9.1 0.1 4.9 5 1 0 5 5 5 0 AAA ATPase domain DUF1788 PF08747.11 gi|433593288|ref|YP_007282774.1| - 4.9e-12 46.0 0.0 6.5e-12 45.5 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1788) RPA_interact_M PF14767.6 gi|433593288|ref|YP_007282774.1| - 0.025 15.2 0.9 0.038 14.6 0.9 1.3 1 0 0 1 1 1 0 Replication protein A interacting middle Tudor_3 PF18115.1 gi|433593288|ref|YP_007282774.1| - 0.083 12.7 0.0 0.2 11.5 0.0 1.6 1 0 0 1 1 1 0 DNA repair protein Crb2 Tudor domain Bac_DnaA PF00308.18 gi|433593289|ref|YP_007282775.1| - 0.012 15.5 0.0 0.03 14.2 0.0 1.6 1 0 0 1 1 1 0 Bacterial dnaA protein AAA_22 PF13401.6 gi|433593289|ref|YP_007282775.1| - 0.043 14.1 0.0 0.26 11.5 0.0 2.4 2 0 0 2 2 2 0 AAA domain Snapin_Pallidin PF14712.6 gi|433593289|ref|YP_007282775.1| - 0.45 11.0 1.8 1.9 9.0 0.8 2.4 2 0 0 2 2 2 0 Snapin/Pallidin N6_Mtase PF02384.16 gi|433593291|ref|YP_007282777.1| - 1.7e-09 37.4 0.0 3.9e-06 26.4 0.0 3.3 3 0 0 3 3 3 2 N-6 DNA Methylase Methyltransf_31 PF13847.6 gi|433593291|ref|YP_007282777.1| - 6.4e-05 22.8 0.0 0.00014 21.7 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.18 gi|433593291|ref|YP_007282777.1| - 0.0025 17.5 0.0 0.077 12.7 0.0 2.5 2 0 0 2 2 2 1 Putative RNA methylase family UPF0020 Eco57I PF07669.11 gi|433593291|ref|YP_007282777.1| - 0.045 14.3 0.0 0.096 13.2 0.0 1.5 1 0 0 1 1 1 0 Eco57I restriction-modification methylase DUF3150 PF11348.8 gi|433593292|ref|YP_007282778.1| - 0.16 11.2 4.9 0.95 8.6 0.1 2.6 3 0 0 3 3 3 0 Protein of unknown function (DUF3150) UPF0184 PF03670.13 gi|433593292|ref|YP_007282778.1| - 2.9 8.3 6.6 16 5.9 0.0 3.8 4 0 0 4 4 4 0 Uncharacterised protein family (UPF0184) ATP-synt_F PF01990.17 gi|433593293|ref|YP_007282779.1| - 0.16 12.3 0.0 3.3 8.1 0.0 2.1 2 0 0 2 2 2 0 ATP synthase (F/14-kDa) subunit PglZ PF08665.12 gi|433593294|ref|YP_007282780.1| - 5.1e-12 46.2 0.0 8.9e-12 45.4 0.0 1.4 1 0 0 1 1 1 1 PglZ domain Helicase_C PF00271.31 gi|433593295|ref|YP_007282781.1| - 6.2e-24 84.5 0.0 1.7e-23 83.1 0.0 1.8 1 0 0 1 1 1 1 Helicase conserved C-terminal domain SNF2_N PF00176.23 gi|433593295|ref|YP_007282781.1| - 9.9e-18 64.0 0.0 7.9e-16 57.7 0.0 2.4 1 1 0 1 1 1 1 SNF2 family N-terminal domain ResIII PF04851.15 gi|433593295|ref|YP_007282781.1| - 1.3e-13 51.3 0.4 8.4e-13 48.7 0.0 2.4 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit DEAD PF00270.29 gi|433593295|ref|YP_007282781.1| - 9.1e-06 25.5 0.0 3.8e-05 23.5 0.0 2.0 2 0 0 2 2 2 1 DEAD/DEAH box helicase RapA_C PF12137.8 gi|433593295|ref|YP_007282781.1| - 6.4e-05 22.1 0.2 6.4e-05 22.1 0.2 2.9 3 0 0 3 3 3 1 RNA polymerase recycling family C-terminal Helicase_C_4 PF13871.6 gi|433593295|ref|YP_007282781.1| - 0.00055 19.7 0.0 0.039 13.6 0.0 2.5 2 0 0 2 2 2 1 C-terminal domain on Strawberry notch homologue Helicase_C_2 PF13307.6 gi|433593295|ref|YP_007282781.1| - 0.00058 20.1 0.3 0.0039 17.4 0.0 2.5 2 1 0 2 2 2 1 Helicase C-terminal domain DUF4611 PF15387.6 gi|433593295|ref|YP_007282781.1| - 0.0099 16.1 11.2 0.47 10.7 2.9 3.1 2 0 0 2 2 2 2 Domain of unknown function (DUF4611) AAA_34 PF13872.6 gi|433593295|ref|YP_007282781.1| - 0.024 13.5 0.4 0.11 11.3 0.4 1.8 1 1 0 1 1 1 0 P-loop containing NTP hydrolase pore-1 DUF2075 PF09848.9 gi|433593295|ref|YP_007282781.1| - 0.14 11.3 0.0 0.14 11.3 0.0 3.5 5 1 0 5 5 5 0 Uncharacterized conserved protein (DUF2075) KxDL PF10241.9 gi|433593295|ref|YP_007282781.1| - 1.1 9.6 5.6 20 5.6 2.2 3.1 2 0 0 2 2 2 0 Uncharacterized conserved protein zf-HC2 PF13490.6 gi|433593295|ref|YP_007282781.1| - 3.7 7.9 9.5 4.3 7.7 2.2 4.2 4 0 0 4 4 3 0 Putative zinc-finger DDE_Tnp_1 PF01609.21 gi|433593297|ref|YP_007282783.1| - 4.4e-27 95.1 0.0 6.1e-27 94.7 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_2 PF04693.12 gi|433593297|ref|YP_007282783.1| - 0.0015 17.9 0.1 0.0022 17.3 0.1 1.2 1 0 0 1 1 1 1 Archaeal putative transposase ISC1217 DDE_Tnp_1_4 PF13701.6 gi|433593297|ref|YP_007282783.1| - 0.11 10.7 0.0 0.16 10.2 0.0 1.2 1 0 0 1 1 1 0 Transposase DDE domain group 1 SRAP PF02586.14 gi|433593298|ref|YP_007282784.1| - 4.1e-63 212.8 0.0 4.7e-63 212.7 0.0 1.0 1 0 0 1 1 1 1 SOS response associated peptidase (SRAP) CorA PF01544.18 gi|433593301|ref|YP_007282787.1| - 0.02 14.2 1.7 0.023 14.0 1.7 1.0 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein HSBP1 PF06825.12 gi|433593301|ref|YP_007282787.1| - 0.071 13.0 0.4 0.11 12.4 0.4 1.3 1 0 0 1 1 1 0 Heat shock factor binding protein 1 MutL_C PF08676.11 gi|433593301|ref|YP_007282787.1| - 0.096 12.4 0.1 0.12 12.1 0.1 1.2 1 0 0 1 1 1 0 MutL C terminal dimerisation domain XhlA PF10779.9 gi|433593301|ref|YP_007282787.1| - 0.12 12.5 1.0 0.25 11.6 1.0 1.4 1 0 0 1 1 1 0 Haemolysin XhlA Laminin_I PF06008.14 gi|433593301|ref|YP_007282787.1| - 0.16 11.6 2.3 0.18 11.5 2.3 1.2 1 0 0 1 1 1 0 Laminin Domain I PSK_trans_fac PF07704.11 gi|433593301|ref|YP_007282787.1| - 0.67 10.7 8.5 15 6.4 8.5 2.0 1 1 0 1 1 1 0 Rv0623-like transcription factor DNA_pol_B PF00136.21 gi|433593302|ref|YP_007282788.1| - 9.4e-26 90.5 0.0 1.9e-25 89.5 0.0 1.4 1 1 0 1 1 1 1 DNA polymerase family B Glycos_transf_N PF04413.16 gi|433593302|ref|YP_007282788.1| - 0.049 13.3 0.0 0.092 12.4 0.0 1.3 1 0 0 1 1 1 0 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Natrinema_pellirubrum_DSM_15624_uid74437/NC_019963.faa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Natrinema_pellirubrum_DSM_15624_uid74437/NC_019963.PFam32-A --tblout /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Natrinema_pellirubrum_DSM_15624_uid74437/NC_019963.PFam32-A.tblout --cpu 20 /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Natrinema_pellirubrum_DSM_15624_uid74437/NC_019963.faa # Current dir: /oak/stanford/groups/akundaje/marinovg/genomes # Date: Mon Mar 25 15:55:24 2019 # [ok]