# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- Cdc6_C PF09079.6 gi|433589360|ref|YP_007278856.1| - 1.5e-27 95.1 0.1 3.9e-27 93.8 0.1 1.8 1 0 0 1 1 1 1 CDC6, C terminal AAA_16 PF13191.1 gi|433589360|ref|YP_007278856.1| - 1.9e-10 41.0 0.8 2.4e-08 34.2 0.0 3.0 2 1 0 2 2 2 1 AAA ATPase domain AAA PF00004.24 gi|433589360|ref|YP_007278856.1| - 1.1e-09 38.5 0.0 0.0008 19.6 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|433589360|ref|YP_007278856.1| - 3e-09 37.1 0.1 2e-06 28.0 0.0 2.6 2 0 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|433589360|ref|YP_007278856.1| - 0.00017 22.3 0.3 0.00071 20.3 0.0 2.2 2 0 0 2 2 1 1 AAA domain RuvB_N PF05496.7 gi|433589360|ref|YP_007278856.1| - 0.00045 19.3 0.0 0.001 18.1 0.0 1.6 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus T2SE PF00437.15 gi|433589360|ref|YP_007278856.1| - 0.00062 18.7 0.0 0.001 18.0 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein Arch_ATPase PF01637.13 gi|433589360|ref|YP_007278856.1| - 0.00073 19.3 0.1 0.042 13.5 0.0 2.4 2 0 0 2 2 2 1 Archaeal ATPase AAA_18 PF13238.1 gi|433589360|ref|YP_007278856.1| - 0.00089 19.5 0.5 0.011 15.9 0.0 2.6 3 0 0 3 3 3 1 AAA domain Sigma54_activat PF00158.21 gi|433589360|ref|YP_007278856.1| - 0.0027 17.1 0.0 0.0062 16.0 0.0 1.6 1 0 0 1 1 1 1 Sigma-54 interaction domain DUF815 PF05673.8 gi|433589360|ref|YP_007278856.1| - 0.0032 16.4 0.0 0.0078 15.1 0.0 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF815) AAA_2 PF07724.9 gi|433589360|ref|YP_007278856.1| - 0.0035 17.2 0.1 2.9 7.7 0.0 2.5 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) ABC_tran PF00005.22 gi|433589360|ref|YP_007278856.1| - 0.0083 16.4 0.0 0.028 14.7 0.0 1.8 1 0 0 1 1 1 1 ABC transporter DEAD PF00270.24 gi|433589360|ref|YP_007278856.1| - 0.0098 15.3 0.3 3.1 7.2 0.0 2.9 3 0 0 3 3 3 1 DEAD/DEAH box helicase NB-ARC PF00931.17 gi|433589360|ref|YP_007278856.1| - 0.016 14.0 0.0 0.027 13.3 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_32 PF13654.1 gi|433589360|ref|YP_007278856.1| - 0.024 13.3 0.3 0.94 8.0 0.0 2.3 2 0 0 2 2 2 0 AAA domain TIP49 PF06068.8 gi|433589360|ref|YP_007278856.1| - 0.033 12.9 0.0 0.065 11.9 0.0 1.4 1 0 0 1 1 1 0 TIP49 C-terminus AAA_24 PF13479.1 gi|433589360|ref|YP_007278856.1| - 0.036 13.6 0.1 0.072 12.6 0.1 1.4 1 0 0 1 1 1 0 AAA domain Sigma54_activ_2 PF14532.1 gi|433589360|ref|YP_007278856.1| - 0.092 12.7 0.0 0.19 11.7 0.0 1.6 1 0 0 1 1 1 0 Sigma-54 interaction domain HSBP1 PF06825.7 gi|433589360|ref|YP_007278856.1| - 0.096 12.2 2.5 0.2 11.2 0.2 2.4 2 0 0 2 2 2 0 Heat shock factor binding protein 1 RNA_helicase PF00910.17 gi|433589360|ref|YP_007278856.1| - 0.1 12.8 0.0 0.21 11.7 0.0 1.5 1 0 0 1 1 1 0 RNA helicase DUF2075 PF09848.4 gi|433589360|ref|YP_007278856.1| - 0.11 11.4 0.0 0.18 10.7 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Peptidase_S24 PF00717.18 gi|433589361|ref|YP_007278857.1| - 9.1e-06 25.2 0.2 2.7e-05 23.7 0.1 1.8 1 1 0 1 1 1 1 Peptidase S24-like Peptidase_S24 PF00717.18 gi|433589362|ref|YP_007278858.1| - 1.7e-09 37.1 0.1 7.2e-09 35.1 0.1 2.0 1 1 0 1 1 1 1 Peptidase S24-like DNA_pol_E_B PF04042.11 gi|433589363|ref|YP_007278859.1| - 7.3e-16 58.0 0.0 1.1e-15 57.5 0.0 1.2 1 0 0 1 1 1 1 DNA polymerase alpha/epsilon subunit B Metallophos_2 PF12850.2 gi|433589363|ref|YP_007278859.1| - 2e-12 47.2 2.2 7.8e-12 45.2 1.5 1.9 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|433589363|ref|YP_007278859.1| - 4.5e-08 32.7 3.1 9.9e-08 31.6 2.2 1.6 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase DUF4427 PF14468.1 gi|433589364|ref|YP_007278860.1| - 0.063 12.9 0.0 0.099 12.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF4427) AA_kinase PF00696.23 gi|433589365|ref|YP_007278861.1| - 1e-48 165.9 2.9 1.9e-48 165.1 1.2 1.8 2 0 0 2 2 2 1 Amino acid kinase family ACT_7 PF13840.1 gi|433589365|ref|YP_007278861.1| - 4.2e-16 58.2 0.0 1.1e-07 31.2 0.0 2.6 2 0 0 2 2 2 2 ACT domain ACT PF01842.20 gi|433589365|ref|YP_007278861.1| - 3.5e-10 39.1 3.5 0.00057 19.3 0.1 3.5 3 0 0 3 3 3 2 ACT domain ACT_6 PF13740.1 gi|433589365|ref|YP_007278861.1| - 0.0026 17.4 0.4 2.4 7.9 0.0 3.0 3 0 0 3 3 3 2 ACT domain TctC PF03401.9 gi|433589365|ref|YP_007278861.1| - 0.04 12.8 0.0 0.064 12.1 0.0 1.2 1 0 0 1 1 1 0 Tripartite tricarboxylate transporter family receptor ACT_4 PF13291.1 gi|433589365|ref|YP_007278861.1| - 0.042 14.1 0.3 7.7 6.9 0.0 2.7 3 0 0 3 3 3 0 ACT domain Beta_elim_lyase PF01212.16 gi|433589367|ref|YP_007278863.1| - 5.2e-71 239.1 0.1 1.1e-70 238.0 0.0 1.5 1 1 0 1 1 1 1 Beta-eliminating lyase PSII_Pbs27 PF13326.1 gi|433589367|ref|YP_007278863.1| - 0.13 12.1 0.1 0.34 10.8 0.0 1.6 1 0 0 1 1 1 0 Photosystem II Pbs27 Acetyltransf_1 PF00583.19 gi|433589369|ref|YP_007278865.1| - 9.9e-11 41.5 0.1 2.2e-10 40.4 0.1 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|433589369|ref|YP_007278865.1| - 7.7e-10 38.9 0.0 1.8e-09 37.7 0.0 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|433589369|ref|YP_007278865.1| - 1.4e-07 31.5 0.0 1.8e-07 31.1 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|433589369|ref|YP_007278865.1| - 4.3e-05 23.3 0.0 9.7e-05 22.2 0.0 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain DUF3749 PF12568.3 gi|433589369|ref|YP_007278865.1| - 0.0025 17.4 0.4 0.0025 17.4 0.3 1.8 2 1 0 2 2 2 1 Acetyltransferase (GNAT) domain DUF3672 PF12421.3 gi|433589371|ref|YP_007278867.1| - 9.8 6.3 12.6 0.87 9.7 2.7 3.2 1 1 2 3 3 3 0 Fibronectin type III protein Rep_fac_C PF08542.6 gi|433589372|ref|YP_007278868.1| - 6.3e-21 74.1 0.0 1.4e-20 73.0 0.0 1.6 1 0 0 1 1 1 1 Replication factor C C-terminal domain AAA PF00004.24 gi|433589372|ref|YP_007278868.1| - 6.2e-20 71.7 0.0 5e-18 65.5 0.0 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) DNA_pol3_delta2 PF13177.1 gi|433589372|ref|YP_007278868.1| - 2.4e-16 59.7 0.0 3.8e-14 52.6 0.0 2.1 1 1 0 1 1 1 1 DNA polymerase III, delta subunit Rad17 PF03215.10 gi|433589372|ref|YP_007278868.1| - 5.6e-09 35.2 0.0 5.6e-06 25.3 0.0 2.2 2 0 0 2 2 2 2 Rad17 cell cycle checkpoint protein AAA_22 PF13401.1 gi|433589372|ref|YP_007278868.1| - 6.6e-08 32.7 0.0 0.0077 16.3 0.0 2.4 1 1 1 2 2 2 2 AAA domain AAA_14 PF13173.1 gi|433589372|ref|YP_007278868.1| - 1.6e-07 31.2 0.0 2.6e-07 30.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain RuvB_N PF05496.7 gi|433589372|ref|YP_007278868.1| - 2.6e-06 26.6 0.0 2e-05 23.7 0.0 2.3 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_16 PF13191.1 gi|433589372|ref|YP_007278868.1| - 3.5e-06 27.1 0.6 0.017 15.1 0.0 3.1 2 1 1 3 3 3 2 AAA ATPase domain AAA_17 PF13207.1 gi|433589372|ref|YP_007278868.1| - 9.5e-05 23.2 0.7 0.00027 21.7 0.2 2.3 2 1 0 2 2 1 1 AAA domain AAA_3 PF07726.6 gi|433589372|ref|YP_007278868.1| - 0.00013 21.5 0.0 0.00075 19.1 0.0 2.0 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.1 gi|433589372|ref|YP_007278868.1| - 0.00018 21.2 0.0 0.00064 19.4 0.0 2.0 1 0 0 1 1 1 1 Part of AAA domain Sigma54_activat PF00158.21 gi|433589372|ref|YP_007278868.1| - 0.00044 19.7 0.0 0.022 14.2 0.0 2.4 1 1 0 1 1 1 1 Sigma-54 interaction domain Sigma54_activ_2 PF14532.1 gi|433589372|ref|YP_007278868.1| - 0.00046 20.2 0.0 0.0012 18.9 0.0 1.6 1 1 0 1 1 1 1 Sigma-54 interaction domain Mg_chelatase PF01078.16 gi|433589372|ref|YP_007278868.1| - 0.00068 18.8 0.0 0.13 11.4 0.0 2.3 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_18 PF13238.1 gi|433589372|ref|YP_007278868.1| - 0.00071 19.8 0.0 0.0021 18.3 0.0 1.9 2 1 0 2 2 1 1 AAA domain IstB_IS21 PF01695.12 gi|433589372|ref|YP_007278868.1| - 0.00074 18.9 0.0 0.002 17.5 0.0 1.8 1 0 0 1 1 1 1 IstB-like ATP binding protein TIP49 PF06068.8 gi|433589372|ref|YP_007278868.1| - 0.0012 17.6 0.0 0.039 12.6 0.0 2.5 1 1 0 2 2 2 1 TIP49 C-terminus AAA_5 PF07728.9 gi|433589372|ref|YP_007278868.1| - 0.0015 18.2 0.0 0.0096 15.6 0.0 2.2 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_25 PF13481.1 gi|433589372|ref|YP_007278868.1| - 0.0017 17.7 0.4 0.0084 15.5 0.0 2.2 1 1 1 2 2 2 1 AAA domain DNA_pol3_delta PF06144.8 gi|433589372|ref|YP_007278868.1| - 0.0026 17.2 0.0 0.0057 16.1 0.0 1.5 1 0 0 1 1 1 1 DNA polymerase III, delta subunit PhoH PF02562.11 gi|433589372|ref|YP_007278868.1| - 0.0042 16.3 0.0 0.21 10.7 0.0 2.3 2 0 0 2 2 2 1 PhoH-like protein Viral_helicase1 PF01443.13 gi|433589372|ref|YP_007278868.1| - 0.0043 16.5 0.0 0.0071 15.8 0.0 1.3 1 0 0 1 1 1 1 Viral (Superfamily 1) RNA helicase FtsK_SpoIIIE PF01580.13 gi|433589372|ref|YP_007278868.1| - 0.0066 15.9 0.0 0.028 13.9 0.0 1.9 2 0 0 2 2 2 1 FtsK/SpoIIIE family AAA_30 PF13604.1 gi|433589372|ref|YP_007278868.1| - 0.0094 15.5 0.2 0.034 13.7 0.2 2.0 1 1 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|433589372|ref|YP_007278868.1| - 0.017 14.5 0.1 3.5 6.9 0.0 2.4 1 1 1 2 2 2 0 AAA-like domain RNA_helicase PF00910.17 gi|433589372|ref|YP_007278868.1| - 0.024 14.8 0.0 0.052 13.7 0.0 1.7 1 1 0 1 1 1 0 RNA helicase AAA_33 PF13671.1 gi|433589372|ref|YP_007278868.1| - 0.024 14.5 0.1 0.11 12.3 0.0 2.1 2 1 0 2 2 2 0 AAA domain T2SE PF00437.15 gi|433589372|ref|YP_007278868.1| - 0.025 13.4 0.0 0.053 12.4 0.0 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_11 PF13086.1 gi|433589372|ref|YP_007278868.1| - 0.025 14.1 0.0 0.031 13.8 0.0 1.2 1 0 0 1 1 1 0 AAA domain DEAD PF00270.24 gi|433589372|ref|YP_007278868.1| - 0.027 13.9 0.3 8.4 5.8 0.0 2.6 2 1 0 3 3 2 0 DEAD/DEAH box helicase AAA_2 PF07724.9 gi|433589372|ref|YP_007278868.1| - 0.028 14.3 0.0 0.095 12.6 0.0 2.0 1 1 0 1 1 1 0 AAA domain (Cdc48 subfamily) NACHT PF05729.7 gi|433589372|ref|YP_007278868.1| - 0.031 13.9 0.0 0.14 11.8 0.0 2.0 3 0 0 3 3 3 0 NACHT domain MobB PF03205.9 gi|433589372|ref|YP_007278868.1| - 0.031 13.9 0.0 0.1 12.2 0.0 1.9 2 0 0 2 2 1 0 Molybdopterin guanine dinucleotide synthesis protein B ResIII PF04851.10 gi|433589372|ref|YP_007278868.1| - 0.039 13.7 0.0 0.091 12.5 0.0 1.6 1 1 0 1 1 1 0 Type III restriction enzyme, res subunit Zeta_toxin PF06414.7 gi|433589372|ref|YP_007278868.1| - 0.053 12.5 0.0 0.14 11.2 0.0 1.7 1 0 0 1 1 1 0 Zeta toxin DUF815 PF05673.8 gi|433589372|ref|YP_007278868.1| - 0.083 11.7 0.0 0.13 11.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF815) DUF3253 PF11625.3 gi|433589372|ref|YP_007278868.1| - 0.1 12.4 0.0 2.3 8.1 0.0 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3253) SNF2_N PF00176.18 gi|433589372|ref|YP_007278868.1| - 0.13 10.9 0.0 0.31 9.8 0.0 1.5 2 0 0 2 2 2 0 SNF2 family N-terminal domain PAS_8 PF13188.1 gi|433589373|ref|YP_007278869.1| - 1e-07 31.5 0.2 2.6e-05 23.9 0.0 3.8 4 0 0 4 4 4 1 PAS domain GAF PF01590.21 gi|433589373|ref|YP_007278869.1| - 4.2e-07 30.2 1.6 4.2e-07 30.2 1.1 2.5 2 0 0 2 2 2 1 GAF domain GAF_2 PF13185.1 gi|433589373|ref|YP_007278869.1| - 7.9e-07 29.6 0.1 7.9e-07 29.6 0.1 2.9 3 1 0 3 3 3 1 GAF domain PAS_4 PF08448.5 gi|433589373|ref|YP_007278869.1| - 3.8e-05 23.6 0.3 3.8e-05 23.6 0.2 3.4 3 1 1 4 4 4 1 PAS fold GAF_3 PF13492.1 gi|433589373|ref|YP_007278869.1| - 8.1e-05 22.7 1.8 0.00036 20.6 0.1 2.7 3 0 0 3 3 3 1 GAF domain PAS_9 PF13426.1 gi|433589373|ref|YP_007278869.1| - 0.062 13.6 0.0 0.14 12.5 0.0 1.5 1 0 0 1 1 1 0 PAS domain DUF2930 PF11152.3 gi|433589373|ref|YP_007278869.1| - 0.21 10.7 0.0 0.37 9.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2930) HALZ PF02183.13 gi|433589373|ref|YP_007278869.1| - 1.5 8.6 4.8 6.3 6.6 1.7 2.7 2 1 0 2 2 2 0 Homeobox associated leucine zipper DivIC PF04977.10 gi|433589373|ref|YP_007278869.1| - 6.7 6.2 6.9 0.97 8.9 1.0 2.3 3 0 0 3 3 3 0 Septum formation initiator 7TM-7TMR_HD PF07698.6 gi|433589374|ref|YP_007278870.1| - 0.17 11.3 11.2 0.35 10.2 3.2 2.9 1 1 2 3 3 3 0 7TM receptor with intracellular HD hydrolase tRNA-synt_2c PF01411.14 gi|433589376|ref|YP_007278872.1| - 6.7e-113 377.8 0.0 8.4e-113 377.5 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (A) tRNA_SAD PF07973.9 gi|433589376|ref|YP_007278872.1| - 1.1e-12 47.6 0.9 2.8e-12 46.3 0.6 1.8 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain DHHA1 PF02272.14 gi|433589376|ref|YP_007278872.1| - 5.6e-09 35.5 4.1 5.6e-09 35.5 2.8 2.4 2 0 0 2 2 2 1 DHHA1 domain UPF0175 PF03683.8 gi|433589377|ref|YP_007278873.1| - 4.9e-13 48.3 1.0 4.9e-13 48.3 0.7 1.5 1 1 1 2 2 2 1 Uncharacterised protein family (UPF0175) RHH_1 PF01402.16 gi|433589377|ref|YP_007278873.1| - 0.0045 16.8 3.1 0.0048 16.7 0.5 2.2 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family DUF3368 PF11848.3 gi|433589378|ref|YP_007278874.1| - 1e-15 56.9 0.0 2.4e-15 55.8 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF3368) Pyridox_oxidase PF01243.15 gi|433589378|ref|YP_007278874.1| - 0.02 14.9 0.0 0.049 13.6 0.0 1.5 1 1 0 1 1 1 0 Pyridoxamine 5'-phosphate oxidase DUF2020 PF09449.5 gi|433589378|ref|YP_007278874.1| - 0.063 12.9 0.1 0.087 12.4 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF2020) Abhydrolase_6 PF12697.2 gi|433589379|ref|YP_007278875.1| - 2.2e-32 112.7 9.7 2.6e-32 112.5 6.7 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|433589379|ref|YP_007278875.1| - 2.4e-19 69.8 0.1 8.7e-11 41.8 0.4 2.0 1 1 1 2 2 2 2 alpha/beta hydrolase fold Abhydrolase_5 PF12695.2 gi|433589379|ref|YP_007278875.1| - 1.5e-14 54.0 0.8 7.4e-14 51.7 0.5 1.9 1 1 0 1 1 1 1 Alpha/beta hydrolase family DUF2267 PF10025.4 gi|433589379|ref|YP_007278875.1| - 0.0038 17.2 0.2 0.0074 16.3 0.1 1.4 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2267) AMP-binding PF00501.23 gi|433589380|ref|YP_007278876.1| - 1.4e-38 132.3 1.6 1.6e-37 128.9 1.1 1.9 1 1 0 1 1 1 1 AMP-binding enzyme GATase PF00117.23 gi|433589381|ref|YP_007278877.1| - 2.5e-21 76.0 0.0 3.6e-21 75.5 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|433589381|ref|YP_007278877.1| - 3.8e-06 26.4 0.1 7.1e-05 22.3 0.1 2.3 1 1 0 1 1 1 1 Peptidase C26 HTS PF04204.11 gi|433589381|ref|YP_007278877.1| - 0.014 14.1 0.1 0.11 11.2 0.1 2.3 1 1 0 1 1 1 0 Homoserine O-succinyltransferase GATase_3 PF07685.9 gi|433589381|ref|YP_007278877.1| - 0.018 14.6 0.0 0.04 13.5 0.0 1.7 1 1 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain PIN PF01850.16 gi|433589383|ref|YP_007278879.1| - 2.8e-09 37.3 0.2 4e-09 36.8 0.1 1.2 1 0 0 1 1 1 1 PIN domain CCG PF02754.11 gi|433589384|ref|YP_007278880.1| - 1.8e-16 59.8 0.0 1.4e-11 44.2 0.1 2.5 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_8 PF13183.1 gi|433589384|ref|YP_007278880.1| - 3.1e-11 43.1 5.4 3.1e-11 43.1 3.7 1.9 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|433589384|ref|YP_007278880.1| - 3.6e-10 39.4 5.5 3.8e-05 23.4 0.2 2.9 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|433589384|ref|YP_007278880.1| - 9.3e-10 38.6 8.2 2.3e-09 37.3 3.9 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|433589384|ref|YP_007278880.1| - 2.3e-09 36.4 13.1 4.6e-05 22.8 1.2 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|433589384|ref|YP_007278880.1| - 7.9e-09 35.8 4.5 0.0067 16.8 0.1 3.7 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|433589384|ref|YP_007278880.1| - 3.1e-06 26.7 20.0 0.00016 21.3 1.7 3.0 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|433589384|ref|YP_007278880.1| - 6.6e-06 26.4 23.1 5.1e-05 23.5 9.0 2.8 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|433589384|ref|YP_007278880.1| - 9e-06 25.9 7.4 9e-06 25.9 5.1 2.6 3 1 0 3 3 2 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|433589384|ref|YP_007278880.1| - 6.3e-05 22.6 22.5 0.00032 20.4 1.6 2.9 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|433589384|ref|YP_007278880.1| - 0.00011 21.9 11.5 0.015 15.0 0.4 2.9 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|433589384|ref|YP_007278880.1| - 0.00049 20.2 19.1 0.0047 17.1 0.6 2.9 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|433589384|ref|YP_007278880.1| - 0.0063 17.2 13.8 0.046 14.4 8.8 2.7 2 1 1 3 3 2 2 4Fe-4S double cluster binding domain Fer4_13 PF13370.1 gi|433589384|ref|YP_007278880.1| - 0.12 12.7 14.5 0.94 9.9 1.9 2.8 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|433589384|ref|YP_007278880.1| - 0.64 10.7 24.8 0.28 11.8 2.7 3.2 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_15 PF13459.1 gi|433589384|ref|YP_007278880.1| - 1.1 9.9 17.2 0.95 10.0 0.5 3.5 4 0 0 4 4 3 0 4Fe-4S single cluster domain HTH_Tnp_1 PF01527.15 gi|433589385|ref|YP_007278881.1| - 0.032 14.1 0.1 0.099 12.6 0.0 1.9 2 0 0 2 2 2 0 Transposase zf-C4H2 PF10146.4 gi|433589385|ref|YP_007278881.1| - 0.063 13.2 0.3 0.063 13.2 0.2 1.5 2 0 0 2 2 2 0 Zinc finger-containing protein Yip1 PF04893.12 gi|433589386|ref|YP_007278882.1| - 0.058 12.8 2.8 0.07 12.6 2.0 1.1 1 0 0 1 1 1 0 Yip1 domain DUF805 PF05656.9 gi|433589386|ref|YP_007278882.1| - 0.27 11.0 4.5 0.27 11.0 3.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF805) Cas_Cas4 PF01930.12 gi|433589388|ref|YP_007278884.1| - 4.9e-06 26.5 0.0 0.00012 22.0 0.0 2.1 2 0 0 2 2 2 1 Domain of unknown function DUF83 PDDEXK_1 PF12705.2 gi|433589388|ref|YP_007278884.1| - 0.00081 18.8 5.5 0.086 12.2 0.5 2.4 1 1 1 2 2 2 2 PD-(D/E)XK nuclease superfamily MerR PF00376.18 gi|433589388|ref|YP_007278884.1| - 0.4 10.2 0.0 0.4 10.2 0.0 2.0 2 0 0 2 2 2 0 MerR family regulatory protein PrgI PF12666.2 gi|433589389|ref|YP_007278885.1| - 0.28 11.3 1.5 0.33 11.1 1.1 1.1 1 0 0 1 1 1 0 PrgI family protein Sua5_yciO_yrdC PF01300.13 gi|433589390|ref|YP_007278886.1| - 2.9e-51 173.2 0.0 3.2e-51 173.0 0.0 1.0 1 0 0 1 1 1 1 Telomere recombination AhpC-TSA PF00578.16 gi|433589391|ref|YP_007278887.1| - 3.3e-12 46.1 0.0 4.1e-12 45.8 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|433589391|ref|YP_007278887.1| - 4.8e-07 29.4 0.0 9.2e-07 28.5 0.0 1.5 1 1 0 1 1 1 1 Redoxin GST_N_3 PF13417.1 gi|433589392|ref|YP_007278888.1| - 1.8e-13 50.4 0.0 2.2e-13 50.2 0.0 1.0 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain Glutaredoxin PF00462.19 gi|433589392|ref|YP_007278888.1| - 2.5e-12 46.5 0.1 3.5e-12 46.1 0.1 1.2 1 0 0 1 1 1 1 Glutaredoxin GST_N_2 PF13409.1 gi|433589392|ref|YP_007278888.1| - 2.3e-10 40.3 0.0 2.7e-10 40.0 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain DUF836 PF05768.9 gi|433589392|ref|YP_007278888.1| - 0.012 15.8 0.1 0.016 15.4 0.1 1.4 1 1 0 1 1 1 0 Glutaredoxin-like domain (DUF836) GST_N PF02798.15 gi|433589392|ref|YP_007278888.1| - 0.017 15.3 0.0 0.022 14.8 0.0 1.2 1 0 0 1 1 1 0 Glutathione S-transferase, N-terminal domain DUF21 PF01595.15 gi|433589393|ref|YP_007278889.1| - 6.4e-55 185.2 1.1 8.7e-55 184.8 0.7 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF21 CorC_HlyC PF03471.12 gi|433589393|ref|YP_007278889.1| - 3.5e-21 74.7 2.4 3.5e-21 74.7 1.6 2.1 2 0 0 2 2 2 1 Transporter associated domain CBS PF00571.23 gi|433589393|ref|YP_007278889.1| - 1.5e-20 72.6 2.4 6.6e-10 38.6 0.1 2.8 2 0 0 2 2 2 2 CBS domain Yip1 PF04893.12 gi|433589393|ref|YP_007278889.1| - 0.022 14.2 2.9 0.035 13.5 2.0 1.3 1 0 0 1 1 1 0 Yip1 domain MS_channel PF00924.13 gi|433589393|ref|YP_007278889.1| - 8 5.7 13.0 5.5 6.2 4.6 2.5 2 0 0 2 2 2 0 Mechanosensitive ion channel Yip1 PF04893.12 gi|433589394|ref|YP_007278890.1| - 0.00043 19.8 3.6 0.31 10.5 0.0 2.2 2 0 0 2 2 2 2 Yip1 domain DUF805 PF05656.9 gi|433589394|ref|YP_007278890.1| - 1.6 8.5 6.6 13 5.6 0.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF805) DUF2975 PF11188.3 gi|433589394|ref|YP_007278890.1| - 2.7 7.6 9.4 4.8 6.8 0.9 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2975) DUF4064 PF13273.1 gi|433589394|ref|YP_007278890.1| - 3.1 7.9 6.0 6.5 6.9 0.0 3.0 1 1 1 2 2 2 0 Protein of unknown function (DUF4064) PHO4 PF01384.15 gi|433589395|ref|YP_007278891.1| - 5e-38 130.5 36.5 5e-38 130.5 25.3 1.3 1 1 0 1 1 1 1 Phosphate transporter family MASE2 PF05230.6 gi|433589395|ref|YP_007278891.1| - 0.72 9.8 6.7 0.18 11.8 0.8 2.9 2 1 0 2 2 2 0 MASE2 domain Mannitol_dh_C PF08125.8 gi|433589398|ref|YP_007278894.1| - 0.17 11.0 0.0 0.23 10.6 0.0 1.2 1 0 0 1 1 1 0 Mannitol dehydrogenase C-terminal domain UPRTase PF14681.1 gi|433589399|ref|YP_007278895.1| - 1.1e-56 191.3 0.0 1.3e-56 191.1 0.0 1.0 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Pribosyltran PF00156.22 gi|433589399|ref|YP_007278895.1| - 4.4e-07 29.6 0.2 6.8e-07 29.0 0.1 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain Cupin_2 PF07883.6 gi|433589400|ref|YP_007278896.1| - 4.7e-11 42.0 0.1 7.4e-11 41.3 0.1 1.4 1 0 0 1 1 1 1 Cupin domain Cupin_1 PF00190.17 gi|433589400|ref|YP_007278896.1| - 0.00045 19.6 0.0 0.00063 19.1 0.0 1.2 1 0 0 1 1 1 1 Cupin MannoseP_isomer PF01050.13 gi|433589400|ref|YP_007278896.1| - 0.00085 18.9 0.0 0.001 18.6 0.0 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase KduI PF04962.7 gi|433589400|ref|YP_007278896.1| - 0.002 17.2 0.0 0.0023 17.0 0.0 1.0 1 0 0 1 1 1 1 KduI/IolB family AraC_binding_2 PF14525.1 gi|433589400|ref|YP_007278896.1| - 0.017 14.7 0.0 0.02 14.4 0.0 1.2 1 0 0 1 1 1 0 AraC-binding-like domain CENP-C_C PF11699.3 gi|433589400|ref|YP_007278896.1| - 0.025 14.5 0.0 0.033 14.1 0.0 1.2 1 0 0 1 1 1 0 Mif2/CENP-C like Auxin_BP PF02041.11 gi|433589400|ref|YP_007278896.1| - 0.031 13.7 0.0 0.041 13.3 0.0 1.3 1 1 0 1 1 1 0 Auxin binding protein AraC_binding PF02311.14 gi|433589400|ref|YP_007278896.1| - 0.038 13.6 0.0 0.048 13.3 0.0 1.2 1 0 0 1 1 1 0 AraC-like ligand binding domain Cupin_7 PF12973.2 gi|433589400|ref|YP_007278896.1| - 0.044 13.6 0.0 0.057 13.2 0.0 1.2 1 0 0 1 1 1 0 ChrR Cupin-like domain DDE_Tnp_IS1595 PF12762.2 gi|433589402|ref|YP_007278898.1| - 1.6e-21 76.7 0.0 2.1e-21 76.3 0.0 1.2 1 0 0 1 1 1 1 ISXO2-like transposase domain DUF2089 PF09862.4 gi|433589402|ref|YP_007278898.1| - 0.091 12.5 0.0 0.14 11.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2089) HTH_29 PF13551.1 gi|433589403|ref|YP_007278899.1| - 6.1e-14 52.1 0.0 3.5e-13 49.6 0.0 2.1 1 1 1 2 2 2 1 Winged helix-turn helix DDE_3 PF13358.1 gi|433589403|ref|YP_007278899.1| - 1.3e-12 47.6 0.1 3.1e-12 46.4 0.0 1.6 2 0 0 2 2 2 1 DDE superfamily endonuclease HTH_32 PF13565.1 gi|433589403|ref|YP_007278899.1| - 1.7e-11 44.7 0.6 2.3e-10 41.1 0.0 2.5 2 0 0 2 2 2 1 Homeodomain-like domain HTH_33 PF13592.1 gi|433589403|ref|YP_007278899.1| - 2.5e-08 33.3 0.0 7.2e-07 28.6 0.0 2.3 2 0 0 2 2 2 1 Winged helix-turn helix HTH_23 PF13384.1 gi|433589403|ref|YP_007278899.1| - 8.8e-07 28.3 0.1 3.4e-06 26.5 0.0 2.0 2 0 0 2 2 2 1 Homeodomain-like domain HTH_28 PF13518.1 gi|433589403|ref|YP_007278899.1| - 2.9e-05 23.9 0.0 7.9e-05 22.5 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain rve PF00665.21 gi|433589403|ref|YP_007278899.1| - 5.8e-05 23.1 0.0 0.00011 22.2 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain DDE_1 PF03184.14 gi|433589403|ref|YP_007278899.1| - 0.00052 19.2 0.0 0.00086 18.5 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_7 PF02796.10 gi|433589403|ref|YP_007278899.1| - 0.0016 18.2 0.1 0.003 17.3 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase DUF746 PF05344.6 gi|433589403|ref|YP_007278899.1| - 0.012 15.1 0.0 0.027 13.9 0.0 1.6 1 0 0 1 1 1 0 Domain of Unknown Function (DUF746) LZ_Tnp_IS481 PF13011.1 gi|433589403|ref|YP_007278899.1| - 0.085 13.2 0.0 0.17 12.2 0.0 1.5 1 0 0 1 1 1 0 leucine-zipper of insertion element IS481 DDE_Tnp_1 PF01609.16 gi|433589404|ref|YP_007278900.1| - 9.4e-11 41.6 2.7 1.7e-10 40.8 1.9 1.4 1 0 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.6 gi|433589404|ref|YP_007278900.1| - 0.021 14.7 0.1 0.061 13.2 0.1 1.8 1 0 0 1 1 1 0 Transposase domain (DUF772) DDE_Tnp_1_assoc PF13808.1 gi|433589404|ref|YP_007278900.1| - 0.09 12.4 0.2 0.18 11.5 0.1 1.6 1 0 0 1 1 1 0 DDE_Tnp_1-associated bPH_6 PF10756.4 gi|433589405|ref|YP_007278901.1| - 0.005 16.7 0.9 0.005 16.7 0.6 2.0 2 0 0 2 2 2 1 Bacterial PH domain UPF0029 PF01205.14 gi|433589406|ref|YP_007278902.1| - 1.8e-35 120.9 0.0 2.5e-35 120.5 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized protein family UPF0029 DUF1949 PF09186.6 gi|433589406|ref|YP_007278902.1| - 2.4e-11 43.0 0.1 2.8e-10 39.6 0.0 2.3 2 0 0 2 2 2 1 Domain of unknown function (DUF1949) EFG_C PF00679.19 gi|433589406|ref|YP_007278902.1| - 0.00059 19.6 0.0 0.0016 18.2 0.0 1.7 2 0 0 2 2 2 1 Elongation factor G C-terminus ACT_7 PF13840.1 gi|433589408|ref|YP_007278904.1| - 0.00013 21.4 0.1 0.00039 19.8 0.0 1.8 2 0 0 2 2 2 1 ACT domain ACT PF01842.20 gi|433589408|ref|YP_007278904.1| - 0.00035 19.9 0.4 0.0011 18.3 0.2 2.2 1 1 1 2 2 2 1 ACT domain Lar_restr_allev PF14354.1 gi|433589409|ref|YP_007278905.1| - 0.0015 18.7 0.5 0.0049 17.1 0.3 2.1 1 1 0 1 1 1 1 Restriction alleviation protein Lar IGPD PF00475.13 gi|433589410|ref|YP_007278906.1| - 2.4e-60 202.5 0.8 3.8e-60 201.9 0.6 1.3 1 0 0 1 1 1 1 Imidazoleglycerol-phosphate dehydratase ClpS PF02617.12 gi|433589410|ref|YP_007278906.1| - 0.17 11.5 0.6 22 4.8 0.0 2.6 3 0 0 3 3 3 0 ATP-dependent Clp protease adaptor protein ClpS DUF347 PF03988.7 gi|433589411|ref|YP_007278907.1| - 0.14 12.0 0.2 0.14 12.0 0.2 1.8 1 1 1 2 2 2 0 Repeat of Unknown Function (DUF347) His_biosynth PF00977.16 gi|433589412|ref|YP_007278908.1| - 1.4e-75 253.4 4.2 1.6e-75 253.2 2.9 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein DHO_dh PF01180.16 gi|433589412|ref|YP_007278908.1| - 2.1e-12 46.5 0.8 2.3e-09 36.6 0.1 2.1 2 0 0 2 2 2 2 Dihydroorotate dehydrogenase Dus PF01207.12 gi|433589412|ref|YP_007278908.1| - 5.9e-11 41.7 0.1 4.5e-05 22.4 0.0 2.2 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) ThiG PF05690.9 gi|433589412|ref|YP_007278908.1| - 1.5e-08 34.0 5.4 0.00091 18.3 0.6 2.1 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG PcrB PF01884.12 gi|433589412|ref|YP_007278908.1| - 3.2e-08 33.1 7.6 0.00019 20.7 0.2 3.0 1 1 1 3 3 3 2 PcrB family Trp_syntA PF00290.15 gi|433589412|ref|YP_007278908.1| - 2.7e-07 29.4 0.8 0.0017 16.9 0.0 2.3 2 0 0 2 2 2 2 Tryptophan synthase alpha chain PEP_mutase PF13714.1 gi|433589412|ref|YP_007278908.1| - 8.5e-07 28.4 1.3 0.0017 17.6 0.3 2.1 2 0 0 2 2 2 2 Phosphoenolpyruvate phosphomutase IGPS PF00218.16 gi|433589412|ref|YP_007278908.1| - 3.9e-06 26.1 0.4 0.00045 19.3 0.0 3.0 3 1 1 4 4 4 1 Indole-3-glycerol phosphate synthase IMPDH PF00478.20 gi|433589412|ref|YP_007278908.1| - 2.5e-05 23.3 1.6 0.0035 16.3 0.2 2.1 2 0 0 2 2 2 2 IMP dehydrogenase / GMP reductase domain NanE PF04131.9 gi|433589412|ref|YP_007278908.1| - 5.5e-05 22.2 2.2 0.0024 16.8 0.2 2.5 1 1 2 3 3 3 1 Putative N-acetylmannosamine-6-phosphate epimerase TMP-TENI PF02581.12 gi|433589412|ref|YP_007278908.1| - 0.00014 21.0 2.2 0.0038 16.3 0.3 2.2 2 0 0 2 2 2 1 Thiamine monophosphate synthase/TENI NMO PF03060.10 gi|433589412|ref|YP_007278908.1| - 0.00017 20.8 5.2 0.00017 20.8 3.6 2.2 1 1 0 2 2 2 1 Nitronate monooxygenase G3P_antiterm PF04309.7 gi|433589412|ref|YP_007278908.1| - 0.0021 17.1 1.0 0.0046 15.9 0.1 1.9 2 1 1 3 3 3 1 Glycerol-3-phosphate responsive antiterminator FMN_dh PF01070.13 gi|433589412|ref|YP_007278908.1| - 0.0078 15.0 12.3 0.011 14.5 2.1 2.2 2 0 0 2 2 2 2 FMN-dependent dehydrogenase TBP-binding PF09247.6 gi|433589412|ref|YP_007278908.1| - 0.015 15.4 0.0 0.029 14.5 0.0 1.4 1 0 0 1 1 1 0 TATA box-binding protein binding Ribul_P_3_epim PF00834.14 gi|433589412|ref|YP_007278908.1| - 0.017 14.2 2.7 0.057 12.5 0.1 2.3 2 0 0 2 2 2 0 Ribulose-phosphate 3 epimerase family PA PF02225.17 gi|433589412|ref|YP_007278908.1| - 0.055 13.1 2.9 3.6 7.3 0.3 2.7 2 1 1 3 3 3 0 PA domain CoA_binding_2 PF13380.1 gi|433589412|ref|YP_007278908.1| - 0.16 12.1 3.0 0.31 11.2 0.4 2.4 1 1 1 2 2 2 0 CoA binding domain EII-Sor PF03609.9 gi|433589413|ref|YP_007278909.1| - 0.042 13.1 0.1 0.049 12.8 0.0 1.1 1 0 0 1 1 1 0 PTS system sorbose-specific iic component Phasin PF05597.6 gi|433589413|ref|YP_007278909.1| - 0.32 10.7 3.0 0.44 10.3 2.1 1.1 1 0 0 1 1 1 0 Poly(hydroxyalcanoate) granule associated protein (phasin) PHO4 PF01384.15 gi|433589414|ref|YP_007278910.1| - 2.3e-59 200.6 25.3 2.3e-59 200.6 17.6 1.7 2 0 0 2 2 2 1 Phosphate transporter family SpoVS PF04232.7 gi|433589414|ref|YP_007278910.1| - 0.012 15.1 1.3 0.051 13.1 0.4 2.4 2 1 0 2 2 2 0 Stage V sporulation protein S (SpoVS) TCRP1 PF14944.1 gi|433589414|ref|YP_007278910.1| - 0.085 12.7 1.5 1.6 8.6 0.2 2.3 2 0 0 2 2 2 0 Tongue Cancer Chemotherapy Resistant Protein 1 Usp PF00582.21 gi|433589415|ref|YP_007278911.1| - 1.9e-21 76.7 1.8 2.2e-21 76.5 1.3 1.1 1 0 0 1 1 1 1 Universal stress protein family PHO4 PF01384.15 gi|433589416|ref|YP_007278912.1| - 1.6e-52 178.2 28.7 1.6e-52 178.2 19.9 1.3 2 0 0 2 2 2 1 Phosphate transporter family SpoVS PF04232.7 gi|433589416|ref|YP_007278912.1| - 0.38 10.3 2.3 0.38 10.3 0.3 1.9 2 0 0 2 2 2 0 Stage V sporulation protein S (SpoVS) Fer2 PF00111.22 gi|433589417|ref|YP_007278913.1| - 8.1e-15 54.3 0.5 1.2e-14 53.7 0.3 1.3 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_4 PF13510.1 gi|433589417|ref|YP_007278913.1| - 0.079 12.7 0.1 0.16 11.7 0.1 1.5 1 1 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain Ribonuc_L-PSP PF01042.16 gi|433589418|ref|YP_007278914.1| - 1.5e-17 63.5 0.0 1.8e-17 63.2 0.0 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP HTH_20 PF12840.2 gi|433589419|ref|YP_007278915.1| - 5.8e-12 45.2 0.6 1e-11 44.4 0.4 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|433589419|ref|YP_007278915.1| - 9e-08 31.6 0.5 1.7e-07 30.7 0.3 1.6 1 1 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|433589419|ref|YP_007278915.1| - 0.0016 18.1 0.0 0.0035 17.0 0.0 1.6 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|433589419|ref|YP_007278915.1| - 0.0017 17.9 0.1 0.0048 16.5 0.1 1.8 1 1 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|433589419|ref|YP_007278915.1| - 0.0084 16.4 0.0 0.019 15.2 0.0 1.6 1 1 0 1 1 1 1 Winged helix DNA-binding domain HTH_34 PF13601.1 gi|433589419|ref|YP_007278915.1| - 0.035 14.1 0.0 0.08 12.9 0.0 1.6 1 1 1 2 2 2 0 Winged helix DNA-binding domain PaaX PF07848.7 gi|433589419|ref|YP_007278915.1| - 0.04 13.9 0.1 0.062 13.2 0.0 1.4 1 0 0 1 1 1 0 PaaX-like protein DUF4423 PF14394.1 gi|433589419|ref|YP_007278915.1| - 0.042 13.4 0.0 0.11 12.0 0.0 1.6 1 1 1 2 2 2 0 Domain of unknown function (DUF4423) AIRS_C PF02769.17 gi|433589419|ref|YP_007278915.1| - 0.091 12.7 0.0 0.11 12.5 0.0 1.2 1 0 0 1 1 1 0 AIR synthase related protein, C-terminal domain HEPN PF05168.9 gi|433589419|ref|YP_007278915.1| - 0.11 12.4 0.1 0.15 11.9 0.1 1.3 1 0 0 1 1 1 0 HEPN domain PT-TG PF14449.1 gi|433589419|ref|YP_007278915.1| - 0.14 11.9 0.1 0.26 11.1 0.1 1.4 1 0 0 1 1 1 0 Pre-toxin TG SBF PF01758.11 gi|433589420|ref|YP_007278916.1| - 4.2e-47 159.9 8.1 4.2e-47 159.9 5.6 2.1 2 0 0 2 2 2 1 Sodium Bile acid symporter family LMWPc PF01451.16 gi|433589421|ref|YP_007278917.1| - 1.1e-27 97.0 0.0 1.4e-27 96.7 0.0 1.1 1 0 0 1 1 1 1 Low molecular weight phosphotyrosine protein phosphatase HPP PF04982.8 gi|433589422|ref|YP_007278918.1| - 3.3e-12 46.2 13.8 9.6e-12 44.8 9.6 1.7 1 1 0 1 1 1 1 HPP family Arc_PepC_II PF06847.6 gi|433589423|ref|YP_007278919.1| - 3.3e-17 62.6 0.0 7.3e-17 61.5 0.0 1.6 1 0 0 1 1 1 1 Archaeal Peptidase A24 C-terminus Type II Peptidase_A24 PF01478.13 gi|433589423|ref|YP_007278919.1| - 0.00011 22.3 13.4 0.00011 22.3 9.3 2.0 2 1 1 3 3 3 1 Type IV leader peptidase family AA_permease PF00324.16 gi|433589424|ref|YP_007278920.1| - 0.12 10.7 2.3 0.14 10.5 1.6 1.0 1 0 0 1 1 1 0 Amino acid permease DUF4131 PF13567.1 gi|433589424|ref|YP_007278920.1| - 0.92 8.8 6.1 1.1 8.6 4.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) HIT PF01230.18 gi|433589426|ref|YP_007278922.1| - 2.5e-28 98.4 0.0 3e-28 98.2 0.0 1.1 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.3 gi|433589426|ref|YP_007278922.1| - 3.9e-18 65.7 0.0 4.8e-18 65.4 0.0 1.1 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding Apo-VLDL-II PF05418.6 gi|433589426|ref|YP_007278922.1| - 0.031 14.4 0.1 0.05 13.7 0.0 1.3 1 0 0 1 1 1 0 Apovitellenin I (Apo-VLDL-II) ESX-1_EspG PF14011.1 gi|433589426|ref|YP_007278922.1| - 0.037 13.2 0.1 0.043 13.0 0.1 1.1 1 0 0 1 1 1 0 EspG family CwfJ_C_1 PF04677.10 gi|433589426|ref|YP_007278922.1| - 0.046 13.3 0.0 0.064 12.8 0.0 1.2 1 0 0 1 1 1 0 Protein similar to CwfJ C-terminus 1 UDG PF03167.14 gi|433589427|ref|YP_007278923.1| - 6.2e-25 87.4 0.0 7.8e-25 87.1 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily Thioredoxin_3 PF13192.1 gi|433589427|ref|YP_007278923.1| - 0.063 13.0 0.0 0.11 12.3 0.0 1.4 1 0 0 1 1 1 0 Thioredoxin domain UPF0253 PF06786.7 gi|433589427|ref|YP_007278923.1| - 0.13 12.4 0.0 0.62 10.2 0.0 1.9 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0253) Tim17 PF02466.14 gi|433589428|ref|YP_007278924.1| - 0.02 14.9 1.3 0.025 14.6 0.9 1.1 1 0 0 1 1 1 0 Tim17/Tim22/Tim23/Pmp24 family DUF2892 PF11127.3 gi|433589428|ref|YP_007278924.1| - 1.8 8.4 7.0 2.5 7.9 4.8 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2892) tRNA-synt_1 PF00133.17 gi|433589430|ref|YP_007278926.1| - 1.6e-177 591.2 0.1 1.9e-177 590.9 0.1 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.8 gi|433589430|ref|YP_007278926.1| - 1e-31 109.7 0.1 2.1e-31 108.7 0.0 1.5 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.6 gi|433589430|ref|YP_007278926.1| - 2e-28 99.1 0.3 2.4e-11 42.9 0.0 3.9 2 2 1 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1_2 PF13603.1 gi|433589430|ref|YP_007278926.1| - 0.003 16.8 0.0 0.012 14.9 0.0 1.9 1 1 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1e PF01406.14 gi|433589430|ref|YP_007278926.1| - 0.011 14.8 0.0 0.38 9.8 0.0 2.4 2 0 0 2 2 2 0 tRNA synthetases class I (C) catalytic domain ARGLU PF15346.1 gi|433589430|ref|YP_007278926.1| - 5 6.8 9.3 0.58 9.9 2.6 2.2 2 0 0 2 2 2 0 Arginine and glutamate-rich 1 Peptidase_MA_2 PF13485.1 gi|433589431|ref|YP_007278927.1| - 9.2e-06 25.7 0.5 1.6e-05 24.9 0.3 1.4 1 0 0 1 1 1 1 Peptidase MA superfamily CARDB PF07705.6 gi|433589431|ref|YP_007278927.1| - 1.4e-05 25.0 0.0 0.0045 17.0 0.0 2.8 2 0 0 2 2 2 2 CARDB DUF1155 PF06633.6 gi|433589431|ref|YP_007278927.1| - 0.13 11.5 0.9 0.46 9.7 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1155) Peptidase_M61 PF05299.7 gi|433589431|ref|YP_007278927.1| - 0.16 11.9 0.1 0.36 10.8 0.1 1.5 1 0 0 1 1 1 0 M61 glycyl aminopeptidase HNOB PF07700.10 gi|433589432|ref|YP_007278928.1| - 3e-18 65.9 0.0 3.5e-18 65.7 0.0 1.0 1 0 0 1 1 1 1 Heme NO binding V4R PF02830.13 gi|433589432|ref|YP_007278928.1| - 2.6e-05 23.9 0.0 5e-05 23.0 0.0 1.5 1 0 0 1 1 1 1 V4R domain ATC_hydrolase PF14196.1 gi|433589432|ref|YP_007278928.1| - 0.083 13.2 0.4 0.33 11.3 0.2 2.0 2 1 1 3 3 3 0 L-2-amino-thiazoline-4-carboxylic acid hydrolase Pribosyltran_N PF13793.1 gi|433589433|ref|YP_007278929.1| - 1.7e-20 72.8 0.0 3.7e-18 65.3 0.0 2.2 2 0 0 2 2 2 2 N-terminal domain of ribose phosphate pyrophosphokinase Pribosyltran PF00156.22 gi|433589433|ref|YP_007278929.1| - 2.6e-10 40.1 3.0 1.4e-09 37.6 0.1 2.7 2 1 0 2 2 2 1 Phosphoribosyl transferase domain Pribosyl_synth PF14572.1 gi|433589433|ref|YP_007278929.1| - 5.3e-08 32.8 0.9 1.2e-07 31.6 0.4 1.6 2 0 0 2 2 2 1 Phosphoribosyl synthetase-associated domain UPRTase PF14681.1 gi|433589433|ref|YP_007278929.1| - 6.2e-06 25.5 0.0 1.1e-05 24.7 0.0 1.3 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.1 gi|433589433|ref|YP_007278929.1| - 0.0064 15.8 0.4 0.041 13.1 0.2 2.2 1 1 0 1 1 1 1 Phosphoribosyl transferase NHL PF01436.16 gi|433589433|ref|YP_007278929.1| - 2.9 8.0 4.6 1.6e+02 2.5 0.0 3.6 4 0 0 4 4 4 0 NHL repeat PGM_PMM_I PF02878.11 gi|433589436|ref|YP_007278932.1| - 6.6e-38 129.3 0.1 1.2e-37 128.5 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.11 gi|433589436|ref|YP_007278932.1| - 9.2e-29 99.8 0.9 4.6e-28 97.5 0.1 2.5 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.11 gi|433589436|ref|YP_007278932.1| - 1.8e-14 53.7 0.0 3.4e-14 52.8 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.15 gi|433589436|ref|YP_007278932.1| - 2.2e-14 53.1 0.2 8.4e-14 51.3 0.1 2.0 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain Usp PF00582.21 gi|433589437|ref|YP_007278933.1| - 8.1e-29 100.6 3.3 9e-29 100.4 2.3 1.0 1 0 0 1 1 1 1 Universal stress protein family GTP-bdg_N PF13167.1 gi|433589437|ref|YP_007278933.1| - 0.15 12.1 0.0 0.27 11.3 0.0 1.4 2 0 0 2 2 2 0 GTP-binding GTPase N-terminal CAP_N PF01213.14 gi|433589438|ref|YP_007278934.1| - 0.016 14.5 0.1 0.34 10.1 0.0 2.1 2 0 0 2 2 2 0 Adenylate cyclase associated (CAP) N terminal ECM11 PF15463.1 gi|433589438|ref|YP_007278934.1| - 0.5 10.6 4.8 0.14 12.4 0.5 2.3 2 0 0 2 2 2 0 Extracellular mutant protein 11 PRA-CH PF01502.13 gi|433589439|ref|YP_007278935.1| - 1.1e-36 124.2 0.7 1.4e-36 123.9 0.1 1.4 2 0 0 2 2 2 1 Phosphoribosyl-AMP cyclohydrolase DUF1469 PF07332.6 gi|433589440|ref|YP_007278936.1| - 0.0029 17.3 2.8 0.0035 17.0 1.9 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1469) DUF2207 PF09972.4 gi|433589440|ref|YP_007278936.1| - 0.043 12.4 0.1 0.043 12.4 0.1 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) DUF485 PF04341.7 gi|433589440|ref|YP_007278936.1| - 0.7 9.6 3.0 1 9.1 2.1 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF485 RseC_MucC PF04246.7 gi|433589440|ref|YP_007278936.1| - 0.89 9.1 4.7 1.1 8.8 3.3 1.1 1 0 0 1 1 1 0 Positive regulator of sigma(E), RseC/MucC SdpI PF13630.1 gi|433589440|ref|YP_007278936.1| - 2.2 8.0 8.5 3 7.6 5.9 1.2 1 0 0 1 1 1 0 SdpI/YhfL protein family Flp_Fap PF04964.9 gi|433589440|ref|YP_007278936.1| - 2.9 7.5 5.9 0.35 10.5 1.2 1.6 2 0 0 2 2 2 0 Flp/Fap pilin component DUF202 PF02656.10 gi|433589440|ref|YP_007278936.1| - 3.9 7.7 6.9 28 5.0 4.8 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF202) YesK PF14150.1 gi|433589440|ref|YP_007278936.1| - 4.1 7.5 12.1 1.1 9.4 1.0 2.1 1 1 1 2 2 2 0 YesK-like protein Antitoxin-MazE PF04014.13 gi|433589441|ref|YP_007278937.1| - 5.4e-09 35.5 0.2 7.8e-09 35.0 0.1 1.3 1 0 0 1 1 1 1 Antidote-toxin recognition MazE PIN PF01850.16 gi|433589442|ref|YP_007278938.1| - 3e-13 50.1 0.5 3.7e-13 49.8 0.3 1.0 1 0 0 1 1 1 1 PIN domain PIN_3 PF13470.1 gi|433589442|ref|YP_007278938.1| - 0.022 15.4 0.1 0.032 14.9 0.1 1.3 1 0 0 1 1 1 0 PIN domain 2-Hacid_dh_C PF02826.14 gi|433589443|ref|YP_007278939.1| - 3e-59 199.1 0.0 7.9e-59 197.7 0.0 1.7 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|433589443|ref|YP_007278939.1| - 2.6e-35 120.7 1.0 4.7e-35 119.9 0.7 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain IlvN PF07991.7 gi|433589443|ref|YP_007278939.1| - 0.00021 20.7 0.0 0.0014 17.9 0.0 2.2 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, catalytic domain ACT PF01842.20 gi|433589443|ref|YP_007278939.1| - 0.0003 20.2 0.0 0.0003 20.2 0.0 3.2 3 1 1 4 4 4 1 ACT domain NAD_binding_2 PF03446.10 gi|433589443|ref|YP_007278939.1| - 0.0004 20.2 0.1 0.0024 17.7 0.0 2.3 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase ELFV_dehydrog PF00208.16 gi|433589443|ref|YP_007278939.1| - 0.0012 18.4 0.4 0.0091 15.5 0.1 2.4 2 1 0 2 2 2 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase NAD_binding_7 PF13241.1 gi|433589443|ref|YP_007278939.1| - 0.0013 18.9 0.0 0.0052 17.0 0.0 2.1 2 0 0 2 2 2 1 Putative NAD(P)-binding UDPG_MGDP_dh_C PF03720.10 gi|433589443|ref|YP_007278939.1| - 0.0016 18.5 0.0 0.0055 16.8 0.0 1.9 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain TrkA_N PF02254.13 gi|433589443|ref|YP_007278939.1| - 0.0076 16.2 1.0 0.033 14.1 0.0 2.6 3 0 0 3 3 3 1 TrkA-N domain AdoHcyase_NAD PF00670.16 gi|433589443|ref|YP_007278939.1| - 0.035 13.9 0.5 1.5 8.6 0.0 2.5 2 0 0 2 2 2 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain F420_oxidored PF03807.12 gi|433589443|ref|YP_007278939.1| - 0.3 11.5 4.3 0.32 11.4 0.0 2.9 4 0 0 4 4 4 0 NADP oxidoreductase coenzyme F420-dependent FliC_SP PF12613.3 gi|433589443|ref|YP_007278939.1| - 2.6 8.3 8.1 17 5.6 0.1 3.0 2 0 0 2 2 2 0 Flagellin structural protein Usp PF00582.21 gi|433589444|ref|YP_007278940.1| - 5.2e-33 114.1 2.2 5.9e-33 114.0 1.5 1.0 1 0 0 1 1 1 1 Universal stress protein family Dodecin PF07311.7 gi|433589444|ref|YP_007278940.1| - 0.15 12.1 0.4 0.33 11.0 0.0 1.8 2 0 0 2 2 2 0 Dodecin PAS_9 PF13426.1 gi|433589445|ref|YP_007278941.1| - 6.4e-29 100.3 0.0 9.2e-14 51.6 0.0 2.6 2 0 0 2 2 2 2 PAS domain PAS_4 PF08448.5 gi|433589445|ref|YP_007278941.1| - 7.7e-24 83.8 0.3 2.1e-11 43.8 0.1 2.6 2 0 0 2 2 2 2 PAS fold PAS PF00989.19 gi|433589445|ref|YP_007278941.1| - 1.3e-20 73.3 0.0 4.9e-13 48.8 0.0 2.4 2 0 0 2 2 2 2 PAS fold HATPase_c PF02518.21 gi|433589445|ref|YP_007278941.1| - 3.6e-19 68.5 0.0 6.5e-19 67.7 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.1 gi|433589445|ref|YP_007278941.1| - 6.2e-12 44.9 0.0 1.4e-06 27.9 0.0 3.2 3 0 0 3 3 3 2 PAS domain HATPase_c_2 PF13581.1 gi|433589445|ref|YP_007278941.1| - 7.1e-09 35.5 0.1 1.6e-08 34.4 0.1 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_3 PF08447.6 gi|433589445|ref|YP_007278941.1| - 9.3e-09 35.2 0.0 0.0015 18.5 0.0 2.6 2 0 0 2 2 2 2 PAS fold HisKA PF00512.20 gi|433589445|ref|YP_007278941.1| - 0.0001 22.2 1.4 0.00043 20.2 1.0 2.1 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c_3 PF13589.1 gi|433589445|ref|YP_007278941.1| - 0.0029 17.2 0.0 0.0047 16.5 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_7 PF12860.2 gi|433589445|ref|YP_007278941.1| - 0.02 14.8 0.0 1.2 9.1 0.0 2.9 3 0 0 3 3 3 0 PAS fold HATPase_c_5 PF14501.1 gi|433589445|ref|YP_007278941.1| - 0.17 11.6 0.0 0.34 10.6 0.0 1.4 1 0 0 1 1 1 0 GHKL domain HAD PF12710.2 gi|433589446|ref|YP_007278942.1| - 6.6e-21 75.3 0.3 8.1e-21 75.0 0.2 1.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|433589446|ref|YP_007278942.1| - 3.4e-16 60.3 0.3 8e-11 42.7 0.0 2.1 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|433589446|ref|YP_007278942.1| - 2.7e-10 40.2 0.2 2.6e-08 33.7 0.0 2.7 3 0 0 3 3 3 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|433589446|ref|YP_007278942.1| - 2.8e-07 30.9 0.5 1.1e-06 28.9 0.0 1.9 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Tad PF13400.1 gi|433589448|ref|YP_007278944.1| - 0.023 14.7 0.6 0.023 14.7 0.4 4.1 5 0 0 5 5 5 0 Putative Flp pilus-assembly TadE/G-like Abhydrolase_1 PF00561.15 gi|433589449|ref|YP_007278945.1| - 2.7e-19 69.6 0.0 3.9e-19 69.1 0.0 1.3 1 0 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.2 gi|433589449|ref|YP_007278945.1| - 1.9e-14 54.1 6.0 2.6e-14 53.6 4.1 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Cys_Met_Meta_PP PF01053.15 gi|433589450|ref|YP_007278946.1| - 8.4e-137 455.5 0.0 9.6e-137 455.3 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.12 gi|433589450|ref|YP_007278946.1| - 3.8e-09 36.0 1.2 6.1e-09 35.3 0.8 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_1_2 PF00155.16 gi|433589450|ref|YP_007278946.1| - 5e-08 32.2 0.0 1e-07 31.2 0.0 1.5 2 0 0 2 2 2 1 Aminotransferase class I and II Aminotran_5 PF00266.14 gi|433589450|ref|YP_007278946.1| - 0.00013 20.8 0.0 0.00021 20.1 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|433589450|ref|YP_007278946.1| - 0.00018 20.7 0.1 0.00042 19.5 0.1 1.6 1 1 0 1 1 1 1 Beta-eliminating lyase DrsE PF02635.10 gi|433589451|ref|YP_007278947.1| - 7.4e-18 64.7 0.0 8.5e-18 64.5 0.0 1.0 1 0 0 1 1 1 1 DsrE/DsrF-like family DrsE_2 PF13686.1 gi|433589451|ref|YP_007278947.1| - 0.027 14.2 0.1 0.031 14.0 0.1 1.3 1 1 0 1 1 1 0 DsrE/DsrF/DrsH-like family MFS_1 PF07690.11 gi|433589453|ref|YP_007278949.1| - 2e-32 112.3 52.5 1.3e-21 76.7 16.0 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily TAT_signal PF10518.4 gi|433589454|ref|YP_007278950.1| - 0.00065 19.4 4.3 0.00097 18.9 3.0 1.3 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence CBM_4_9 PF02018.12 gi|433589454|ref|YP_007278950.1| - 0.0036 17.3 0.2 0.0094 15.9 0.0 1.6 1 1 1 2 2 2 1 Carbohydrate binding domain Aminotran_5 PF00266.14 gi|433589455|ref|YP_007278951.1| - 1.3e-30 106.4 0.0 1.6e-30 106.1 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V HEAT_2 PF13646.1 gi|433589456|ref|YP_007278952.1| - 0.034 14.4 5.2 1.8 8.8 0.3 3.0 2 1 2 4 4 4 0 HEAT repeats Peptidase_S8 PF00082.17 gi|433589457|ref|YP_007278953.1| - 1.4e-50 172.0 3.3 1.7e-50 171.7 2.3 1.1 1 0 0 1 1 1 1 Subtilase family TAT_signal PF10518.4 gi|433589457|ref|YP_007278953.1| - 8.1 6.7 11.8 0.17 12.0 1.9 2.6 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence eIF-1a PF01176.14 gi|433589458|ref|YP_007278954.1| - 1.3e-28 98.1 0.3 1.7e-28 97.8 0.2 1.1 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 Sclerostin PF05463.6 gi|433589458|ref|YP_007278954.1| - 0.11 12.0 0.0 0.14 11.6 0.0 1.1 1 0 0 1 1 1 0 Sclerostin (SOST) DUF1700 PF08006.6 gi|433589459|ref|YP_007278955.1| - 0.044 13.0 5.0 0.047 12.9 3.4 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1700) DUF2065 PF09838.4 gi|433589459|ref|YP_007278955.1| - 6.6 6.5 11.7 2.5 7.8 1.0 2.3 2 1 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2065) DUF460 PF04312.8 gi|433589460|ref|YP_007278956.1| - 2.8e-51 172.6 0.7 8.1e-51 171.1 0.1 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF460) FlaC_arch PF05377.6 gi|433589460|ref|YP_007278956.1| - 0.00044 20.0 5.5 0.13 12.1 0.4 2.8 2 0 0 2 2 2 2 Flagella accessory protein C (FlaC) PspA_IM30 PF04012.7 gi|433589460|ref|YP_007278956.1| - 0.0058 16.0 13.5 0.78 9.0 8.3 3.1 2 1 0 2 2 2 1 PspA/IM30 family V_ATPase_I PF01496.14 gi|433589460|ref|YP_007278956.1| - 0.011 13.6 7.8 0.02 12.7 5.4 1.4 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family DUF4140 PF13600.1 gi|433589460|ref|YP_007278956.1| - 0.019 15.3 3.3 0.019 15.3 2.3 3.5 2 1 1 3 3 2 0 N-terminal domain of unknown function (DUF4140) Herpes_UL6 PF01763.11 gi|433589460|ref|YP_007278956.1| - 0.022 12.9 5.1 0.034 12.3 3.5 1.2 1 0 0 1 1 1 0 Herpesvirus UL6 like AAA_13 PF13166.1 gi|433589460|ref|YP_007278956.1| - 0.039 12.4 4.0 0.061 11.7 2.8 1.2 1 0 0 1 1 1 0 AAA domain DUF1664 PF07889.7 gi|433589460|ref|YP_007278956.1| - 0.046 13.5 8.9 1.2 8.8 0.4 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) DivIVA PF05103.8 gi|433589460|ref|YP_007278956.1| - 0.048 13.7 11.4 0.14 12.1 7.9 1.8 1 0 0 1 1 1 0 DivIVA protein NPV_P10 PF05531.7 gi|433589460|ref|YP_007278956.1| - 0.061 13.5 0.8 1.7 8.9 0.1 2.9 3 0 0 3 3 2 0 Nucleopolyhedrovirus P10 protein LMBR1 PF04791.11 gi|433589460|ref|YP_007278956.1| - 0.093 11.3 1.7 0.13 10.7 1.2 1.2 1 0 0 1 1 1 0 LMBR1-like membrane protein Laminin_II PF06009.7 gi|433589460|ref|YP_007278956.1| - 0.1 12.3 5.9 0.31 10.7 4.1 1.8 1 0 0 1 1 1 0 Laminin Domain II Prefoldin PF02996.12 gi|433589460|ref|YP_007278956.1| - 0.12 11.9 4.8 2.5 7.7 0.5 2.6 2 0 0 2 2 2 0 Prefoldin subunit FlaG PF03646.10 gi|433589460|ref|YP_007278956.1| - 0.24 11.5 10.6 0.89 9.7 2.4 2.6 2 0 0 2 2 2 0 FlaG protein BLOC1_2 PF10046.4 gi|433589460|ref|YP_007278956.1| - 0.27 11.4 7.7 0.52 10.4 0.7 3.1 2 1 1 3 3 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF342 PF03961.8 gi|433589460|ref|YP_007278956.1| - 0.28 9.5 5.4 0.49 8.7 3.7 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF342) Spc7 PF08317.6 gi|433589460|ref|YP_007278956.1| - 0.3 9.7 9.9 0.56 8.8 6.9 1.4 1 0 0 1 1 1 0 Spc7 kinetochore protein CENP-F_leu_zip PF10473.4 gi|433589460|ref|YP_007278956.1| - 0.31 10.8 22.9 0.82 9.5 3.5 3.1 2 1 1 3 3 3 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Atg14 PF10186.4 gi|433589460|ref|YP_007278956.1| - 0.38 9.6 10.2 0.68 8.8 7.1 1.3 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 Tropomyosin_1 PF12718.2 gi|433589460|ref|YP_007278956.1| - 0.44 10.4 26.9 0.036 13.9 14.0 2.6 3 0 0 3 3 2 0 Tropomyosin like TBPIP PF07106.8 gi|433589460|ref|YP_007278956.1| - 0.56 9.7 10.9 1.5 8.3 7.4 1.7 1 1 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Nup54 PF13874.1 gi|433589460|ref|YP_007278956.1| - 0.56 9.8 11.2 1.3 8.7 7.8 1.5 1 0 0 1 1 1 0 Nucleoporin complex subunit 54 Fib_alpha PF08702.5 gi|433589460|ref|YP_007278956.1| - 0.85 9.7 6.4 1.2 9.2 0.5 2.5 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family TMF_TATA_bd PF12325.3 gi|433589460|ref|YP_007278956.1| - 1.8 8.3 22.3 6 6.6 4.7 2.6 1 1 1 2 2 2 0 TATA element modulatory factor 1 TATA binding APG6 PF04111.7 gi|433589460|ref|YP_007278956.1| - 2.2 7.2 18.9 5.1 6.0 13.1 1.5 1 1 0 1 1 1 0 Autophagy protein Apg6 Cauli_AT PF03233.8 gi|433589460|ref|YP_007278956.1| - 2.9 7.5 6.3 0.24 11.1 0.5 1.9 2 0 0 2 2 2 0 Aphid transmission protein TMF_DNA_bd PF12329.3 gi|433589460|ref|YP_007278956.1| - 5.3 6.9 20.2 0.54 10.0 2.0 2.9 2 1 1 3 3 2 0 TATA element modulatory factor 1 DNA binding CENP-Q PF13094.1 gi|433589460|ref|YP_007278956.1| - 5.4 7.0 21.0 28 4.6 14.6 2.1 1 1 0 1 1 1 0 CENP-Q, a CENPA-CAD centromere complex subunit IncA PF04156.9 gi|433589460|ref|YP_007278956.1| - 5.7 6.4 30.0 0.096 12.2 15.0 2.3 3 1 0 3 3 2 0 IncA protein DUF16 PF01519.11 gi|433589460|ref|YP_007278956.1| - 6.8 6.9 9.4 2 8.7 0.9 2.6 1 1 1 2 2 2 0 Protein of unknown function DUF16 DUF3373 PF11853.3 gi|433589460|ref|YP_007278956.1| - 7 5.0 8.5 4.5 5.6 1.5 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3373) bZIP_1 PF00170.16 gi|433589460|ref|YP_007278956.1| - 9.8 6.2 25.7 0.1 12.5 5.1 2.9 3 0 0 3 3 2 0 bZIP transcription factor ADIP PF11559.3 gi|433589460|ref|YP_007278956.1| - 9.9 6.0 17.6 29 4.5 5.0 2.5 1 1 1 2 2 2 0 Afadin- and alpha -actinin-Binding Lactamase_B_2 PF12706.2 gi|433589461|ref|YP_007278957.1| - 7.3e-28 97.4 0.0 1e-27 96.9 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|433589461|ref|YP_007278957.1| - 4e-12 46.1 3.6 1.8e-10 40.7 2.5 2.3 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily CARDB PF07705.6 gi|433589462|ref|YP_007278958.1| - 3.8e-07 30.0 2.0 2.4e-06 27.5 0.0 2.9 3 1 0 3 3 3 1 CARDB RskA PF10099.4 gi|433589462|ref|YP_007278958.1| - 0.019 14.7 0.0 0.051 13.3 0.0 1.8 1 0 0 1 1 1 0 Anti-sigma-K factor rskA Fn3-like PF14310.1 gi|433589462|ref|YP_007278958.1| - 0.022 14.7 1.0 13 5.7 0.0 3.3 4 0 0 4 4 4 0 Fibronectin type III-like domain Mycobact_memb PF05423.8 gi|433589462|ref|YP_007278958.1| - 0.12 12.1 0.1 0.28 10.9 0.0 1.6 1 0 0 1 1 1 0 Mycobacterium membrane protein DUF1299 PF06975.6 gi|433589462|ref|YP_007278958.1| - 0.28 11.0 2.2 19 5.2 0.0 3.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1299) Rep_fac_C PF08542.6 gi|433589463|ref|YP_007278959.1| - 5.7e-13 48.6 0.0 1.4e-12 47.4 0.0 1.7 1 0 0 1 1 1 1 Replication factor C C-terminal domain AAA PF00004.24 gi|433589463|ref|YP_007278959.1| - 1e-12 48.3 0.0 4.3e-12 46.3 0.0 2.0 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) DNA_pol3_delta2 PF13177.1 gi|433589463|ref|YP_007278959.1| - 8.4e-11 41.7 0.0 1.5e-10 40.9 0.0 1.4 1 0 0 1 1 1 1 DNA polymerase III, delta subunit AAA_22 PF13401.1 gi|433589463|ref|YP_007278959.1| - 2.5e-07 30.8 0.0 7.3e-07 29.3 0.0 1.8 2 0 0 2 2 1 1 AAA domain AAA_16 PF13191.1 gi|433589463|ref|YP_007278959.1| - 2.6e-07 30.7 0.1 0.00012 22.1 0.0 2.9 2 1 1 3 3 3 1 AAA ATPase domain Sigma54_activat PF00158.21 gi|433589463|ref|YP_007278959.1| - 1.2e-06 28.0 0.0 5.6e-05 22.6 0.0 2.5 3 0 0 3 3 2 1 Sigma-54 interaction domain AAA_19 PF13245.1 gi|433589463|ref|YP_007278959.1| - 5.5e-06 26.0 0.0 3e-05 23.6 0.0 2.2 2 0 0 2 2 2 1 Part of AAA domain AAA_14 PF13173.1 gi|433589463|ref|YP_007278959.1| - 7.3e-06 25.9 0.0 1.7e-05 24.7 0.0 1.6 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.7 gi|433589463|ref|YP_007278959.1| - 1.9e-05 23.8 0.0 5.2e-05 22.4 0.0 1.9 2 1 0 2 2 2 1 Zeta toxin Mg_chelatase PF01078.16 gi|433589463|ref|YP_007278959.1| - 3.7e-05 22.9 0.0 6e-05 22.2 0.0 1.2 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_18 PF13238.1 gi|433589463|ref|YP_007278959.1| - 7.2e-05 23.0 0.0 0.00015 22.0 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|433589463|ref|YP_007278959.1| - 0.00022 22.0 0.1 0.0013 19.5 0.0 2.4 1 1 1 2 2 2 1 AAA domain TIP49 PF06068.8 gi|433589463|ref|YP_007278959.1| - 0.00036 19.3 0.0 0.0049 15.6 0.0 2.3 3 0 0 3 3 3 1 TIP49 C-terminus Sigma54_activ_2 PF14532.1 gi|433589463|ref|YP_007278959.1| - 0.00037 20.5 0.0 0.0032 17.5 0.0 2.1 2 0 0 2 2 2 1 Sigma-54 interaction domain T2SE PF00437.15 gi|433589463|ref|YP_007278959.1| - 0.00039 19.4 0.0 0.0013 17.6 0.0 1.8 2 0 0 2 2 2 1 Type II/IV secretion system protein AAA_5 PF07728.9 gi|433589463|ref|YP_007278959.1| - 0.00083 19.0 0.0 0.0038 16.9 0.0 2.1 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) NACHT PF05729.7 gi|433589463|ref|YP_007278959.1| - 0.0015 18.2 0.0 0.0048 16.5 0.0 1.8 1 1 0 1 1 1 1 NACHT domain IstB_IS21 PF01695.12 gi|433589463|ref|YP_007278959.1| - 0.0024 17.2 0.0 0.0055 16.1 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_24 PF13479.1 gi|433589463|ref|YP_007278959.1| - 0.0039 16.8 0.0 0.0057 16.2 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_11 PF13086.1 gi|433589463|ref|YP_007278959.1| - 0.0073 15.9 0.0 0.012 15.2 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|433589463|ref|YP_007278959.1| - 0.014 15.2 0.0 0.027 14.3 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|433589463|ref|YP_007278959.1| - 0.016 14.8 0.1 0.056 13.0 0.0 1.9 2 0 0 2 2 2 0 AAA domain CPT PF07931.7 gi|433589463|ref|YP_007278959.1| - 0.017 14.7 0.0 0.033 13.8 0.0 1.4 1 0 0 1 1 1 0 Chloramphenicol phosphotransferase-like protein FtsK_SpoIIIE PF01580.13 gi|433589463|ref|YP_007278959.1| - 0.029 13.8 0.0 0.087 12.2 0.0 1.8 2 0 0 2 2 2 0 FtsK/SpoIIIE family AAA_25 PF13481.1 gi|433589463|ref|YP_007278959.1| - 0.04 13.3 0.0 4.2 6.7 0.0 2.5 2 0 0 2 2 2 0 AAA domain RuvB_N PF05496.7 gi|433589463|ref|YP_007278959.1| - 0.049 12.6 0.0 0.19 10.7 0.0 1.9 3 0 0 3 3 3 0 Holliday junction DNA helicase ruvB N-terminus Tnp_P_element_C PF12596.3 gi|433589463|ref|YP_007278959.1| - 0.079 13.3 0.1 0.6 10.4 0.0 2.4 3 0 0 3 3 2 0 87kDa Transposase AAA_2 PF07724.9 gi|433589463|ref|YP_007278959.1| - 0.1 12.4 0.0 0.31 10.9 0.0 1.8 1 1 0 1 1 1 0 AAA domain (Cdc48 subfamily) DNA_pol3_delta PF06144.8 gi|433589463|ref|YP_007278959.1| - 0.11 11.9 0.0 0.2 11.1 0.0 1.4 1 0 0 1 1 1 0 DNA polymerase III, delta subunit RNA_helicase PF00910.17 gi|433589463|ref|YP_007278959.1| - 0.11 12.6 0.0 0.26 11.4 0.0 1.7 1 0 0 1 1 1 0 RNA helicase DEAD PF00270.24 gi|433589463|ref|YP_007278959.1| - 0.16 11.4 0.1 2.6 7.5 0.0 2.1 1 1 0 2 2 2 0 DEAD/DEAH box helicase Rad17 PF03215.10 gi|433589463|ref|YP_007278959.1| - 0.2 10.2 0.0 0.36 9.4 0.0 1.4 2 0 0 2 2 2 0 Rad17 cell cycle checkpoint protein UPF0020 PF01170.13 gi|433589464|ref|YP_007278960.1| - 7.3e-27 94.0 0.0 1.7e-26 92.8 0.0 1.6 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_26 PF13659.1 gi|433589464|ref|YP_007278960.1| - 7.9e-10 38.8 0.3 7.9e-10 38.8 0.2 2.1 2 1 0 2 2 2 1 Methyltransferase domain THUMP PF02926.12 gi|433589464|ref|YP_007278960.1| - 0.00014 21.7 0.0 0.00037 20.4 0.0 1.6 2 0 0 2 2 2 1 THUMP domain Methyltransf_11 PF08241.7 gi|433589464|ref|YP_007278960.1| - 0.00017 21.9 0.0 0.00066 20.1 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|433589464|ref|YP_007278960.1| - 0.0012 19.3 1.1 0.004 17.7 0.0 2.1 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|433589464|ref|YP_007278960.1| - 0.002 17.7 0.0 0.005 16.4 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.5 gi|433589464|ref|YP_007278960.1| - 0.047 13.2 0.0 0.062 12.8 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase TBP PF00352.16 gi|433589465|ref|YP_007278961.1| - 7.2e-66 217.5 0.0 8.3e-32 108.4 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.3 gi|433589465|ref|YP_007278961.1| - 0.011 15.7 0.0 1.4 9.0 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF3378) CENP-F_C_Rb_bdg PF10490.4 gi|433589465|ref|YP_007278961.1| - 0.031 13.6 0.6 8.4 5.8 0.0 2.4 2 0 0 2 2 2 0 Rb-binding domain of kinetochore protein Cenp-F/LEK1 DUF3773 PF12608.3 gi|433589465|ref|YP_007278961.1| - 0.038 14.0 0.0 0.23 11.5 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3773) HisG PF01634.13 gi|433589467|ref|YP_007278963.1| - 3.7e-48 163.1 0.1 5.7e-48 162.5 0.1 1.2 1 0 0 1 1 1 1 ATP phosphoribosyltransferase HisG_C PF08029.6 gi|433589467|ref|YP_007278963.1| - 3.4e-25 87.7 0.1 7.3e-25 86.7 0.1 1.6 1 0 0 1 1 1 1 HisG, C-terminal domain NMT1 PF09084.6 gi|433589467|ref|YP_007278963.1| - 3.2e-05 23.6 0.1 0.0005 19.7 0.1 2.3 1 1 0 1 1 1 1 NMT1/THI5 like Phosphonate-bd PF12974.2 gi|433589467|ref|YP_007278963.1| - 0.0073 15.7 0.1 0.018 14.4 0.0 1.7 1 1 0 2 2 2 1 ABC transporter, phosphonate, periplasmic substrate-binding protein LysR_substrate PF03466.15 gi|433589467|ref|YP_007278963.1| - 0.02 13.9 0.2 0.028 13.5 0.2 1.3 1 0 0 1 1 1 0 LysR substrate binding domain SHOCT PF09851.4 gi|433589468|ref|YP_007278964.1| - 7.7e-07 28.3 5.1 1e-06 27.9 3.6 1.2 1 0 0 1 1 1 1 Short C-terminal domain DUF1707 PF08044.6 gi|433589468|ref|YP_007278964.1| - 0.00015 21.4 5.1 0.0003 20.4 3.5 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1707) PT-TG PF14449.1 gi|433589468|ref|YP_007278964.1| - 0.038 13.7 0.0 0.086 12.6 0.0 1.5 1 0 0 1 1 1 0 Pre-toxin TG GvpG PF05120.7 gi|433589468|ref|YP_007278964.1| - 0.085 12.6 0.4 0.14 11.9 0.3 1.4 1 0 0 1 1 1 0 Gas vesicle protein G DMAP_binding PF06464.6 gi|433589468|ref|YP_007278964.1| - 0.13 12.8 0.4 0.16 12.5 0.3 1.1 1 0 0 1 1 1 0 DMAP1-binding Domain Flavi_NS4A PF01350.12 gi|433589468|ref|YP_007278964.1| - 0.2 11.2 4.0 0.29 10.6 2.8 1.2 1 0 0 1 1 1 0 Flavivirus non-structural protein NS4A DUF1049 PF06305.6 gi|433589468|ref|YP_007278964.1| - 0.32 10.5 2.4 2.1 7.8 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1049) Apq12 PF12716.2 gi|433589468|ref|YP_007278964.1| - 2.3 8.0 7.4 0.15 11.7 1.0 1.9 2 0 0 2 2 2 0 Nuclear pore assembly and biogenesis Metal_resist PF13801.1 gi|433589468|ref|YP_007278964.1| - 4.8 7.1 7.6 1.1 9.3 0.1 2.1 1 1 1 2 2 2 0 Heavy-metal resistance DUF318 PF03773.8 gi|433589469|ref|YP_007278965.1| - 2.5e-41 141.6 19.5 4.4e-41 140.8 13.5 1.3 1 1 0 1 1 1 1 Predicted permease YHS PF04945.8 gi|433589469|ref|YP_007278965.1| - 2.3e-15 56.1 4.3 1.2e-10 41.0 1.1 2.4 2 0 0 2 2 2 2 YHS domain zf-FCS PF06467.9 gi|433589469|ref|YP_007278965.1| - 2.9e-06 26.7 1.1 0.013 15.1 0.1 2.3 2 0 0 2 2 2 2 MYM-type Zinc finger with FCS sequence motif zf-HIT PF04438.11 gi|433589469|ref|YP_007278965.1| - 0.0057 16.2 0.5 0.17 11.5 0.1 2.3 2 0 0 2 2 2 1 HIT zinc finger Ribosomal_L24e PF01246.15 gi|433589469|ref|YP_007278965.1| - 0.0058 16.4 0.1 2.6 7.9 0.0 2.4 2 0 0 2 2 2 2 Ribosomal protein L24e Arc_trans_TRASH PF08394.5 gi|433589469|ref|YP_007278965.1| - 0.039 14.1 0.5 0.097 12.8 0.0 1.8 2 0 0 2 2 2 0 Archaeal TRASH domain HMA PF00403.21 gi|433589470|ref|YP_007278966.1| - 1.2e-19 70.1 0.5 1.3e-19 70.0 0.4 1.0 1 0 0 1 1 1 1 Heavy-metal-associated domain HTH_24 PF13412.1 gi|433589471|ref|YP_007278967.1| - 3.3e-15 55.1 0.0 4.8e-15 54.6 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|433589471|ref|YP_007278967.1| - 6.9e-15 54.3 0.3 6.9e-15 54.3 0.2 1.7 2 0 0 2 2 1 1 AsnC-type helix-turn-helix domain MarR_2 PF12802.2 gi|433589471|ref|YP_007278967.1| - 4.4e-08 32.6 0.1 6.9e-08 32.0 0.0 1.3 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|433589471|ref|YP_007278967.1| - 1.4e-07 31.1 0.0 2.1e-07 30.5 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|433589471|ref|YP_007278967.1| - 2.8e-07 30.2 0.0 5.5e-07 29.3 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|433589471|ref|YP_007278967.1| - 2.9e-05 23.6 0.0 4.2e-05 23.1 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Arc_trans_TRASH PF08394.5 gi|433589471|ref|YP_007278967.1| - 0.0016 18.5 2.1 0.0023 18.0 1.4 1.3 1 0 0 1 1 1 1 Archaeal TRASH domain LIM PF00412.17 gi|433589471|ref|YP_007278967.1| - 0.0018 18.3 1.2 0.0031 17.5 0.8 1.4 1 0 0 1 1 1 1 LIM domain HTH_IclR PF09339.5 gi|433589471|ref|YP_007278967.1| - 0.002 17.6 0.0 0.0033 16.9 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_27 PF13463.1 gi|433589471|ref|YP_007278967.1| - 0.0033 17.7 0.0 0.0065 16.7 0.0 1.6 2 0 0 2 2 1 1 Winged helix DNA-binding domain TrmB PF01978.14 gi|433589471|ref|YP_007278967.1| - 0.0039 16.8 0.0 0.0068 16.0 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB YHS PF04945.8 gi|433589471|ref|YP_007278967.1| - 0.0049 16.6 1.9 0.0086 15.9 1.3 1.3 1 0 0 1 1 1 1 YHS domain ATPase-cat_bd PF12156.3 gi|433589471|ref|YP_007278967.1| - 0.017 15.6 2.9 0.034 14.6 2.0 1.4 1 0 0 1 1 1 0 Putative metal-binding domain of cation transport ATPase HTH_11 PF08279.7 gi|433589471|ref|YP_007278967.1| - 0.046 13.3 0.0 0.076 12.6 0.0 1.3 1 0 0 1 1 1 0 HTH domain Fe_dep_repress PF01325.14 gi|433589471|ref|YP_007278967.1| - 0.054 13.4 0.0 0.087 12.7 0.0 1.2 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_34 PF13601.1 gi|433589471|ref|YP_007278967.1| - 0.067 13.2 0.0 0.1 12.6 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_1 PF00126.22 gi|433589471|ref|YP_007278967.1| - 0.073 12.8 0.0 0.2 11.4 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family Ta0938 PF11494.3 gi|433589471|ref|YP_007278967.1| - 0.14 12.2 0.9 0.31 11.1 0.6 1.5 1 0 0 1 1 1 0 Ta0938 HxlR PF01638.12 gi|433589471|ref|YP_007278967.1| - 0.14 11.7 0.0 0.25 11.0 0.0 1.3 1 0 0 1 1 1 0 HxlR-like helix-turn-helix zf-FCS PF06467.9 gi|433589471|ref|YP_007278967.1| - 0.26 10.9 3.3 0.43 10.2 2.3 1.4 1 0 0 1 1 1 0 MYM-type Zinc finger with FCS sequence motif Zn-ribbon_8 PF09723.5 gi|433589471|ref|YP_007278967.1| - 3.8 7.5 7.0 9.9 6.2 2.2 2.5 2 0 0 2 2 2 0 Zinc ribbon domain Hydrolase PF00702.21 gi|433589472|ref|YP_007278968.1| - 7.3e-53 180.1 9.4 7.3e-53 180.1 6.5 1.7 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase E1-E2_ATPase PF00122.15 gi|433589472|ref|YP_007278968.1| - 8.8e-50 168.8 0.2 8.8e-50 168.8 0.1 1.6 2 0 0 2 2 2 1 E1-E2 ATPase HMA PF00403.21 gi|433589472|ref|YP_007278968.1| - 4.4e-27 93.9 0.0 3.9e-12 46.1 0.0 2.7 2 0 0 2 2 2 2 Heavy-metal-associated domain HAD PF12710.2 gi|433589472|ref|YP_007278968.1| - 3.3e-18 66.5 0.1 1e-17 64.9 0.1 1.9 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|433589472|ref|YP_007278968.1| - 7.5e-08 32.2 1.5 0.0014 18.2 0.4 2.4 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.1 gi|433589472|ref|YP_007278968.1| - 0.0049 16.7 0.7 0.032 14.1 0.0 2.7 4 0 0 4 4 4 1 Haloacid dehalogenase-like hydrolase DUF4382 PF14321.1 gi|433589473|ref|YP_007278969.1| - 3.5e-25 88.7 0.9 2.3e-24 86.0 0.6 2.0 1 1 0 1 1 1 1 Domain of unknown function (DUF4382) DUF95 PF01944.12 gi|433589474|ref|YP_007278970.1| - 3.1e-28 98.5 16.2 3.8e-28 98.2 11.2 1.1 1 0 0 1 1 1 1 Integral membrane protein DUF95 Amidohydro_1 PF01979.15 gi|433589475|ref|YP_007278971.1| - 9.5e-46 156.9 3.4 1.2e-45 156.6 2.4 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_4 PF13147.1 gi|433589475|ref|YP_007278971.1| - 4.9e-13 49.7 17.0 1e-12 48.6 11.8 1.6 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|433589475|ref|YP_007278971.1| - 2.9e-11 43.2 12.2 6.6e-10 38.7 4.5 2.7 1 1 0 2 2 2 2 Amidohydrolase family Amidohydro_5 PF13594.1 gi|433589475|ref|YP_007278971.1| - 1.4e-08 34.4 0.1 1.1e-07 31.5 0.0 2.5 2 0 0 2 2 2 1 Amidohydrolase A_deaminase PF00962.17 gi|433589475|ref|YP_007278971.1| - 0.00053 18.9 0.0 0.00093 18.2 0.0 1.4 1 0 0 1 1 1 1 Adenosine/AMP deaminase CarboxypepD_reg PF13620.1 gi|433589476|ref|YP_007278972.1| - 0.018 15.0 10.1 0.052 13.5 7.0 1.8 1 0 0 1 1 1 0 Carboxypeptidase regulatory-like domain Bile_Hydr_Trans PF04775.9 gi|433589476|ref|YP_007278972.1| - 0.1 12.3 1.3 0.34 10.6 0.1 2.2 1 1 1 2 2 2 0 Acyl-CoA thioester hydrolase/BAAT N-terminal region AdoHcyase PF05221.12 gi|433589477|ref|YP_007278973.1| - 1.1e-52 178.6 0.1 1.4e-52 178.3 0.1 1.0 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase AdoHcyase_NAD PF00670.16 gi|433589477|ref|YP_007278973.1| - 1.1e-47 161.9 1.2 2.1e-47 161.0 0.3 1.8 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|433589477|ref|YP_007278973.1| - 7.6e-09 34.9 0.1 1.5e-08 34.0 0.1 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.7 gi|433589477|ref|YP_007278973.1| - 7e-06 25.5 0.6 1.7e-05 24.2 0.1 1.9 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, catalytic domain TrkA_N PF02254.13 gi|433589477|ref|YP_007278973.1| - 0.01 15.8 0.1 0.024 14.6 0.1 1.6 1 0 0 1 1 1 0 TrkA-N domain 3HCDH_N PF02737.13 gi|433589477|ref|YP_007278973.1| - 0.041 13.5 0.3 0.1 12.2 0.2 1.8 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ParBc PF02195.13 gi|433589477|ref|YP_007278973.1| - 0.057 13.5 0.0 0.32 11.1 0.0 2.2 2 0 0 2 2 2 0 ParB-like nuclease domain PAS_9 PF13426.1 gi|433589478|ref|YP_007278974.1| - 3.4e-09 37.0 0.0 6.2e-09 36.1 0.0 1.4 1 0 0 1 1 1 1 PAS domain PAS_4 PF08448.5 gi|433589478|ref|YP_007278974.1| - 0.0001 22.2 0.3 0.00037 20.5 0.0 2.0 2 0 0 2 2 2 1 PAS fold MMPL PF03176.10 gi|433589479|ref|YP_007278975.1| - 0.0028 16.3 0.1 0.0031 16.2 0.1 1.0 1 0 0 1 1 1 1 MMPL family SnoaL_2 PF12680.2 gi|433589479|ref|YP_007278975.1| - 0.093 13.1 0.1 0.11 12.9 0.1 1.1 1 0 0 1 1 1 0 SnoaL-like domain HTH_26 PF13443.1 gi|433589479|ref|YP_007278975.1| - 0.097 12.8 0.0 0.16 12.2 0.0 1.3 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain PAS_9 PF13426.1 gi|433589480|ref|YP_007278976.1| - 9.7e-68 225.1 7.4 1.6e-17 63.7 0.0 5.7 5 0 0 5 5 5 5 PAS domain PAS_3 PF08447.6 gi|433589480|ref|YP_007278976.1| - 4.7e-52 174.0 0.1 1.5e-16 60.2 0.1 5.6 5 0 0 5 5 5 5 PAS fold PAS_4 PF08448.5 gi|433589480|ref|YP_007278976.1| - 1.2e-50 170.1 22.0 3.8e-14 52.6 0.1 5.8 5 0 0 5 5 5 5 PAS fold PAS PF00989.19 gi|433589480|ref|YP_007278976.1| - 2e-46 156.4 3.9 1.7e-16 60.0 0.0 5.6 5 0 0 5 5 5 4 PAS fold GAF_2 PF13185.1 gi|433589480|ref|YP_007278976.1| - 1.6e-21 77.3 10.1 2.4e-12 47.5 0.2 4.9 4 0 0 4 4 4 3 GAF domain GAF_3 PF13492.1 gi|433589480|ref|YP_007278976.1| - 3.8e-21 75.5 3.2 7.5e-07 29.3 0.1 4.4 4 0 0 4 4 4 3 GAF domain HTH_10 PF04967.7 gi|433589480|ref|YP_007278976.1| - 6.4e-16 57.6 0.0 1.4e-15 56.5 0.0 1.6 1 0 0 1 1 1 1 HTH DNA binding domain PAS_8 PF13188.1 gi|433589480|ref|YP_007278976.1| - 7e-15 54.2 2.6 0.00014 21.5 0.0 4.3 4 0 0 4 4 4 3 PAS domain PAS_10 PF13596.1 gi|433589480|ref|YP_007278976.1| - 2.7e-08 34.0 0.0 0.076 13.2 0.0 4.3 4 0 0 4 4 4 2 PAS domain HTH_5 PF01022.15 gi|433589480|ref|YP_007278976.1| - 0.053 13.1 0.0 0.16 11.6 0.0 1.8 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_22 PF13309.1 gi|433589480|ref|YP_007278976.1| - 0.1 12.3 0.0 2.2 8.0 0.0 2.8 3 0 0 3 3 3 0 HTH domain SlyX PF04102.7 gi|433589480|ref|YP_007278976.1| - 9.3 6.7 7.6 4.1 7.8 0.2 3.9 4 0 0 4 4 3 0 SlyX Abi PF02517.11 gi|433589481|ref|YP_007278977.1| - 1.9e-15 56.7 2.4 1.9e-15 56.7 1.7 2.5 2 1 0 2 2 2 1 CAAX protease self-immunity Hjc PF01870.13 gi|433589482|ref|YP_007278978.1| - 1.1e-27 95.4 0.0 1.4e-27 95.1 0.0 1.1 1 0 0 1 1 1 1 Archaeal holliday junction resolvase (hjc) NHL PF01436.16 gi|433589482|ref|YP_007278978.1| - 0.048 13.6 0.0 0.092 12.7 0.0 1.4 1 0 0 1 1 1 0 NHL repeat SWIM PF04434.12 gi|433589484|ref|YP_007278980.1| - 0.0015 17.9 0.1 0.004 16.6 0.1 1.8 1 0 0 1 1 1 1 SWIM zinc finger Cyclotide PF03784.8 gi|433589484|ref|YP_007278980.1| - 0.45 10.4 3.1 2.4 8.0 0.7 2.3 2 0 0 2 2 2 0 Cyclotide family UPF0104 PF03706.8 gi|433589485|ref|YP_007278981.1| - 0.0045 16.3 0.2 0.0045 16.3 0.1 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0104) TctB PF07331.6 gi|433589485|ref|YP_007278981.1| - 0.016 14.8 0.4 0.02 14.5 0.3 1.1 1 0 0 1 1 1 0 Tripartite tricarboxylate transporter TctB family SdpI PF13630.1 gi|433589485|ref|YP_007278981.1| - 0.099 12.3 1.3 0.73 9.5 1.1 1.9 1 1 1 2 2 2 0 SdpI/YhfL protein family Tetraspannin PF00335.15 gi|433589485|ref|YP_007278981.1| - 0.58 9.3 2.3 0.71 9.1 1.6 1.1 1 0 0 1 1 1 0 Tetraspanin family DUF2892 PF11127.3 gi|433589485|ref|YP_007278981.1| - 0.72 9.7 5.0 1.3 8.8 3.5 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2892) DNA_primase_lrg PF04104.9 gi|433589486|ref|YP_007278982.1| - 5.7e-36 124.1 0.0 8.9e-36 123.4 0.0 1.3 1 0 0 1 1 1 1 Eukaryotic and archaeal DNA primase, large subunit Abhydrolase_6 PF12697.2 gi|433589487|ref|YP_007278983.1| - 1e-36 126.9 3.6 1.2e-36 126.7 2.5 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|433589487|ref|YP_007278983.1| - 2.1e-23 83.1 0.0 6.1e-13 48.8 0.0 2.1 1 1 1 2 2 2 2 alpha/beta hydrolase fold Abhydrolase_5 PF12695.2 gi|433589487|ref|YP_007278983.1| - 1.3e-21 76.8 0.1 7.4e-21 74.4 0.1 2.0 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_4 PF08386.5 gi|433589487|ref|YP_007278983.1| - 4.7e-05 23.2 0.0 8.4e-05 22.4 0.0 1.4 1 0 0 1 1 1 1 TAP-like protein LIP PF03583.9 gi|433589487|ref|YP_007278983.1| - 0.00011 21.4 0.4 0.12 11.5 0.0 2.2 2 0 0 2 2 2 2 Secretory lipase Abhydrolase_2 PF02230.11 gi|433589487|ref|YP_007278983.1| - 0.0039 16.6 0.0 0.018 14.4 0.0 1.9 2 0 0 2 2 2 1 Phospholipase/Carboxylesterase UPF0227 PF05728.7 gi|433589487|ref|YP_007278983.1| - 0.0054 16.4 0.4 3.1 7.4 0.1 2.2 2 0 0 2 2 2 2 Uncharacterised protein family (UPF0227) Peptidase_S9 PF00326.16 gi|433589487|ref|YP_007278983.1| - 0.014 14.6 0.3 0.09 11.9 0.0 2.3 3 0 0 3 3 3 0 Prolyl oligopeptidase family DLH PF01738.13 gi|433589487|ref|YP_007278983.1| - 0.019 14.2 0.0 0.17 11.1 0.0 2.1 2 0 0 2 2 2 0 Dienelactone hydrolase family DUF915 PF06028.6 gi|433589487|ref|YP_007278983.1| - 0.047 12.7 0.2 0.096 11.7 0.0 1.5 2 0 0 2 2 2 0 Alpha/beta hydrolase of unknown function (DUF915) Hydrolase_4 PF12146.3 gi|433589487|ref|YP_007278983.1| - 0.054 13.3 0.0 0.12 12.2 0.0 1.6 1 0 0 1 1 1 0 Putative lysophospholipase FSH1 PF03959.8 gi|433589487|ref|YP_007278983.1| - 0.063 12.7 0.0 0.19 11.1 0.0 1.7 2 0 0 2 2 2 0 Serine hydrolase (FSH1) Ndr PF03096.9 gi|433589487|ref|YP_007278983.1| - 0.19 10.1 0.0 0.3 9.5 0.0 1.2 1 0 0 1 1 1 0 Ndr family DUF2048 PF09752.4 gi|433589487|ref|YP_007278983.1| - 0.24 10.2 1.5 28 3.4 0.0 2.8 2 1 1 3 3 3 0 Uncharacterized conserved protein (DUF2048) PCNA_N PF00705.13 gi|433589489|ref|YP_007278985.1| - 8.5e-10 38.2 0.1 1.4e-09 37.5 0.1 1.3 1 0 0 1 1 1 1 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.10 gi|433589489|ref|YP_007278985.1| - 1e-05 25.4 0.0 2e-05 24.5 0.0 1.7 1 1 0 1 1 1 1 Proliferating cell nuclear antigen, C-terminal domain Rad9 PF04139.8 gi|433589489|ref|YP_007278985.1| - 0.025 13.7 0.0 0.045 12.8 0.0 1.4 1 0 0 1 1 1 0 Rad9 DUF2993 PF11209.3 gi|433589489|ref|YP_007278985.1| - 0.047 13.5 0.1 0.17 11.8 0.0 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF2993) DUF106 PF01956.11 gi|433589490|ref|YP_007278986.1| - 6.3e-39 133.1 0.0 8.2e-39 132.8 0.0 1.1 1 0 0 1 1 1 1 Integral membrane protein DUF106 FtsJ PF01728.14 gi|433589491|ref|YP_007278987.1| - 2.9e-51 174.0 0.0 3.5e-51 173.7 0.0 1.1 1 0 0 1 1 1 1 FtsJ-like methyltransferase TRAM PF01938.15 gi|433589491|ref|YP_007278987.1| - 1.8e-13 50.0 1.9 8.6e-13 47.8 0.4 2.3 2 0 0 2 2 2 1 TRAM domain Methyltransf_31 PF13847.1 gi|433589491|ref|YP_007278987.1| - 4.2e-06 26.4 0.0 1.9e-05 24.3 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|433589491|ref|YP_007278987.1| - 1.7e-05 24.5 0.1 4.8e-05 23.1 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|433589491|ref|YP_007278987.1| - 3.9e-05 23.6 0.1 7e-05 22.8 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|433589491|ref|YP_007278987.1| - 0.00016 22.2 0.3 0.0011 19.5 0.2 2.1 1 1 0 1 1 1 1 Methyltransferase domain MaoC_dehydratas PF01575.14 gi|433589491|ref|YP_007278987.1| - 0.054 12.8 0.0 0.12 11.7 0.0 1.6 1 0 0 1 1 1 0 MaoC like domain PCMT PF01135.14 gi|433589491|ref|YP_007278987.1| - 0.12 11.8 0.0 0.26 10.7 0.0 1.6 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) RHH_1 PF01402.16 gi|433589492|ref|YP_007278988.1| - 0.0018 18.0 0.2 0.0052 16.6 0.0 1.8 1 1 1 2 2 2 1 Ribbon-helix-helix protein, copG family TatC PF00902.13 gi|433589493|ref|YP_007278989.1| - 2e-63 213.6 40.0 1e-35 123.1 9.2 2.4 3 0 0 3 3 3 2 Sec-independent protein translocase protein (TatC) COX7C PF02935.11 gi|433589493|ref|YP_007278989.1| - 1.1 9.1 4.1 3.3 7.5 0.1 2.9 2 0 0 2 2 2 0 Cytochrome c oxidase subunit VIIc TMEM18 PF14770.1 gi|433589493|ref|YP_007278989.1| - 2.1 7.8 10.2 0.63 9.5 3.7 2.8 2 1 0 2 2 2 0 Transmembrane protein 18 TatC PF00902.13 gi|433589494|ref|YP_007278990.1| - 9.6e-39 133.0 14.8 1.2e-38 132.7 10.3 1.1 1 0 0 1 1 1 1 Sec-independent protein translocase protein (TatC) zf-DHHC PF01529.15 gi|433589494|ref|YP_007278990.1| - 5.5 6.3 8.6 1.5 8.1 3.5 1.8 1 1 1 2 2 2 0 DHHC palmitoyltransferase DUF3816 PF12822.2 gi|433589494|ref|YP_007278990.1| - 8.5 6.2 17.9 0.64 9.8 8.2 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3816) Molybdopterin PF00384.17 gi|433589495|ref|YP_007278991.1| - 2.6e-55 187.8 0.0 3.6e-55 187.4 0.0 1.2 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|433589495|ref|YP_007278991.1| - 7.5e-14 51.4 0.5 4.1e-11 42.6 0.0 2.7 3 0 0 3 3 3 2 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.11 gi|433589495|ref|YP_007278991.1| - 1.8e-07 30.8 2.0 3.7e-07 29.8 1.4 1.5 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain NIR_SIR PF01077.17 gi|433589496|ref|YP_007278992.1| - 1.5e-40 138.1 0.0 2e-25 89.0 0.0 2.3 2 0 0 2 2 2 2 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.12 gi|433589496|ref|YP_007278992.1| - 6.9e-38 128.1 0.1 3.8e-18 64.8 0.0 3.3 2 1 0 2 2 2 2 Nitrite/Sulfite reductase ferredoxin-like half domain Asn_synthase PF00733.16 gi|433589499|ref|YP_007278995.1| - 6.9e-11 42.1 0.9 9e-11 41.7 0.6 1.4 1 1 0 1 1 1 1 Asparagine synthase tRNA_Me_trans PF03054.11 gi|433589499|ref|YP_007278995.1| - 5.4e-09 35.0 0.1 4.1e-06 25.5 0.1 2.2 2 0 0 2 2 2 2 tRNA methyl transferase NAD_synthase PF02540.12 gi|433589499|ref|YP_007278995.1| - 2.8e-08 32.9 0.0 4.6e-08 32.2 0.0 1.3 1 0 0 1 1 1 1 NAD synthase QueC PF06508.8 gi|433589499|ref|YP_007278995.1| - 1.4e-05 24.5 0.0 0.0002 20.7 0.0 2.1 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC ATP_bind_3 PF01171.15 gi|433589499|ref|YP_007278995.1| - 0.026 14.0 0.1 0.15 11.5 0.1 2.2 2 1 0 2 2 2 0 PP-loop family Arginosuc_synth PF00764.14 gi|433589499|ref|YP_007278995.1| - 0.035 13.1 0.1 0.05 12.6 0.1 1.2 1 0 0 1 1 1 0 Arginosuccinate synthase PG_binding_2 PF08823.6 gi|433589499|ref|YP_007278995.1| - 0.12 12.4 0.1 1.2 9.3 0.0 2.3 2 0 0 2 2 2 0 Putative peptidoglycan binding domain DUF208 PF02677.9 gi|433589499|ref|YP_007278995.1| - 0.15 11.8 0.0 0.24 11.1 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized BCR, COG1636 Turandot PF07240.6 gi|433589500|ref|YP_007278996.1| - 0.12 11.8 0.1 0.53 9.8 0.0 1.9 2 0 0 2 2 2 0 Stress-inducible humoral factor Turandot TMEM238 PF15125.1 gi|433589500|ref|YP_007278996.1| - 0.13 12.1 0.1 0.13 12.1 0.1 1.6 2 0 0 2 2 2 0 TMEM238 protein family DUF368 PF04018.8 gi|433589501|ref|YP_007278997.1| - 3.1e-58 196.9 15.6 3.9e-58 196.6 10.8 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF368) TruB_C PF09142.6 gi|433589501|ref|YP_007278997.1| - 5.8 6.6 15.2 2.4 7.8 1.5 3.5 3 0 0 3 3 3 0 tRNA Pseudouridine synthase II, C terminal MutS_V PF00488.16 gi|433589502|ref|YP_007278998.1| - 7.1e-11 41.9 0.0 1.3e-10 41.0 0.0 1.4 1 0 0 1 1 1 1 MutS domain V HHH PF00633.18 gi|433589502|ref|YP_007278998.1| - 5.7e-06 25.7 0.9 0.00053 19.5 0.0 3.0 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|433589502|ref|YP_007278998.1| - 9.1e-05 22.5 1.6 9.1e-05 22.5 1.1 3.6 4 0 0 4 4 4 1 Helix-hairpin-helix domain Transposase_20 PF02371.11 gi|433589502|ref|YP_007278998.1| - 0.0098 15.9 0.0 0.023 14.7 0.0 1.6 1 0 0 1 1 1 1 Transposase IS116/IS110/IS902 family IMS_HHH PF11798.3 gi|433589502|ref|YP_007278998.1| - 0.019 14.9 0.0 0.057 13.4 0.0 1.8 1 0 0 1 1 1 0 IMS family HHH motif AAA_21 PF13304.1 gi|433589502|ref|YP_007278998.1| - 0.029 14.3 0.1 0.15 11.9 0.0 1.9 2 0 0 2 2 2 0 AAA domain Dynactin_p22 PF07426.6 gi|433589503|ref|YP_007278999.1| - 0.16 11.2 0.1 0.21 10.8 0.0 1.1 1 0 0 1 1 1 0 Dynactin subunit p22 AAA_16 PF13191.1 gi|433589504|ref|YP_007279000.1| - 1.2e-13 51.4 0.0 2.6e-12 47.1 0.0 2.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|433589504|ref|YP_007279000.1| - 2.7e-10 40.4 0.0 5.4e-10 39.5 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA PF00004.24 gi|433589504|ref|YP_007279000.1| - 9.8e-06 25.7 0.0 2.5e-05 24.4 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Cdc6_C PF09079.6 gi|433589504|ref|YP_007279000.1| - 2.1e-05 24.1 0.5 6.4e-05 22.5 0.0 2.1 2 0 0 2 2 2 1 CDC6, C terminal Arch_ATPase PF01637.13 gi|433589504|ref|YP_007279000.1| - 3e-05 23.8 0.0 7.7e-05 22.4 0.0 1.5 1 1 0 1 1 1 1 Archaeal ATPase AAA_19 PF13245.1 gi|433589504|ref|YP_007279000.1| - 3.9e-05 23.3 0.1 0.00011 21.8 0.0 1.8 1 0 0 1 1 1 1 Part of AAA domain IstB_IS21 PF01695.12 gi|433589504|ref|YP_007279000.1| - 8.2e-05 22.0 0.1 0.33 10.3 0.0 2.6 3 0 0 3 3 2 2 IstB-like ATP binding protein AAA_33 PF13671.1 gi|433589504|ref|YP_007279000.1| - 0.00044 20.1 0.0 0.00092 19.1 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_35 PF14516.1 gi|433589504|ref|YP_007279000.1| - 0.00053 18.7 0.0 0.02 13.5 0.0 2.3 2 0 0 2 2 2 1 AAA-like domain AAA_14 PF13173.1 gi|433589504|ref|YP_007279000.1| - 0.00072 19.4 0.1 0.031 14.1 0.0 2.3 1 1 0 2 2 2 1 AAA domain Viral_helicase1 PF01443.13 gi|433589504|ref|YP_007279000.1| - 0.0013 18.3 0.0 0.002 17.6 0.0 1.3 1 0 0 1 1 1 1 Viral (Superfamily 1) RNA helicase AAA_11 PF13086.1 gi|433589504|ref|YP_007279000.1| - 0.0016 18.0 0.0 0.0024 17.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|433589504|ref|YP_007279000.1| - 0.0016 19.2 1.3 0.0082 16.9 0.6 2.5 1 1 0 1 1 1 1 AAA domain T2SE PF00437.15 gi|433589504|ref|YP_007279000.1| - 0.0022 16.9 0.0 0.0042 16.0 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_32 PF13654.1 gi|433589504|ref|YP_007279000.1| - 0.003 16.2 0.0 1.2 7.7 0.0 2.3 2 0 0 2 2 2 2 AAA domain NACHT PF05729.7 gi|433589504|ref|YP_007279000.1| - 0.0032 17.1 0.0 0.0085 15.7 0.0 1.8 1 1 0 1 1 1 1 NACHT domain AAA_18 PF13238.1 gi|433589504|ref|YP_007279000.1| - 0.0066 16.7 0.0 0.018 15.3 0.0 1.9 1 1 0 1 1 1 1 AAA domain Miro PF08477.8 gi|433589504|ref|YP_007279000.1| - 0.0075 16.7 0.0 0.016 15.6 0.0 1.6 1 0 0 1 1 1 1 Miro-like protein DUF2075 PF09848.4 gi|433589504|ref|YP_007279000.1| - 0.0076 15.2 0.0 0.012 14.6 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) NTPase_1 PF03266.10 gi|433589504|ref|YP_007279000.1| - 0.0094 15.6 0.0 0.021 14.5 0.0 1.6 1 0 0 1 1 1 1 NTPase AAA_28 PF13521.1 gi|433589504|ref|YP_007279000.1| - 0.0095 15.9 0.1 0.02 14.8 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.1 gi|433589504|ref|YP_007279000.1| - 0.013 15.0 0.2 0.032 13.8 0.0 1.7 2 0 0 2 2 1 0 AAA domain Sigma54_activat PF00158.21 gi|433589504|ref|YP_007279000.1| - 0.02 14.3 0.0 0.035 13.5 0.0 1.3 1 0 0 1 1 1 0 Sigma-54 interaction domain Zeta_toxin PF06414.7 gi|433589504|ref|YP_007279000.1| - 0.021 13.9 0.0 0.047 12.7 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin DUF815 PF05673.8 gi|433589504|ref|YP_007279000.1| - 0.026 13.4 0.0 0.12 11.2 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF815) RNA_helicase PF00910.17 gi|433589504|ref|YP_007279000.1| - 0.026 14.6 0.0 0.057 13.6 0.0 1.6 1 0 0 1 1 1 0 RNA helicase AAA_24 PF13479.1 gi|433589504|ref|YP_007279000.1| - 0.03 13.9 0.0 0.054 13.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain Bac_DnaA PF00308.13 gi|433589504|ref|YP_007279000.1| - 0.047 13.3 0.0 0.12 12.0 0.0 1.6 2 0 0 2 2 2 0 Bacterial dnaA protein DUF835 PF05763.7 gi|433589504|ref|YP_007279000.1| - 0.071 12.6 0.2 0.23 11.0 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF835) ArgK PF03308.11 gi|433589504|ref|YP_007279000.1| - 0.079 11.7 0.0 0.14 10.9 0.0 1.4 1 0 0 1 1 1 0 ArgK protein RuvB_N PF05496.7 gi|433589504|ref|YP_007279000.1| - 0.1 11.6 0.0 0.17 10.8 0.0 1.3 1 0 0 1 1 1 0 Holliday junction DNA helicase ruvB N-terminus TrwB_AAD_bind PF10412.4 gi|433589504|ref|YP_007279000.1| - 0.14 10.7 0.0 0.21 10.1 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain KAP_NTPase PF07693.9 gi|433589504|ref|YP_007279000.1| - 0.14 11.0 0.0 9.7 5.0 0.0 2.2 1 1 1 2 2 2 0 KAP family P-loop domain Halo_GVPC PF05465.8 gi|433589505|ref|YP_007279001.1| - 0.0032 17.3 1.8 0.0086 15.9 1.2 1.8 1 0 0 1 1 1 1 Halobacterial gas vesicle protein C (GVPC) repeat RPN7 PF10602.4 gi|433589505|ref|YP_007279001.1| - 0.021 14.2 1.1 0.027 13.8 0.4 1.5 1 1 0 1 1 1 0 26S proteasome subunit RPN7 Hemerythrin PF01814.18 gi|433589505|ref|YP_007279001.1| - 0.039 14.0 6.6 1.2 9.2 0.8 2.0 1 1 1 2 2 2 0 Hemerythrin HHE cation binding domain DUF3373 PF11853.3 gi|433589505|ref|YP_007279001.1| - 0.057 11.9 0.1 0.19 10.2 0.0 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF3373) Cytochrom_B562 PF07361.6 gi|433589505|ref|YP_007279001.1| - 0.26 11.7 2.1 1.1 9.7 0.2 2.0 1 1 1 2 2 2 0 Cytochrome b562 TarH PF02203.10 gi|433589505|ref|YP_007279001.1| - 0.47 10.2 4.3 0.61 9.9 3.0 1.3 1 0 0 1 1 1 0 Tar ligand binding domain homologue DUF883 PF05957.8 gi|433589505|ref|YP_007279001.1| - 0.55 10.6 9.7 0.37 11.2 3.4 2.0 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) GTPase_Cys_C PF12631.2 gi|433589505|ref|YP_007279001.1| - 0.75 10.2 3.5 3 8.3 0.3 2.1 1 1 0 2 2 2 0 Catalytic cysteine-containing C-terminus of GTPase, MnmE TPR_9 PF13371.1 gi|433589505|ref|YP_007279001.1| - 2.7 7.9 6.2 2 8.2 0.5 2.6 2 1 0 2 2 2 0 Tetratricopeptide repeat HSCB_C PF07743.8 gi|433589505|ref|YP_007279001.1| - 8.3 6.9 8.0 15 6.1 0.8 2.1 1 1 1 2 2 2 0 HSCB C-terminal oligomerisation domain DUF4397 PF14344.1 gi|433589506|ref|YP_007279002.1| - 8.7e-52 174.5 11.4 8.8e-26 90.6 1.7 2.1 1 1 1 2 2 2 2 Domain of unknown function (DUF4397) AlgF PF11182.3 gi|433589506|ref|YP_007279002.1| - 0.00013 21.7 1.2 0.0077 15.9 0.2 2.3 1 1 1 2 2 2 2 Alginate O-acetyl transferase AlgF UvrB PF12344.3 gi|433589507|ref|YP_007279003.1| - 3.1e-18 64.9 0.5 6.6e-18 63.9 0.4 1.6 1 0 0 1 1 1 1 Ultra-violet resistance protein B Helicase_C PF00271.26 gi|433589507|ref|YP_007279003.1| - 4.4e-15 55.3 0.0 1.1e-14 54.0 0.0 1.8 1 0 0 1 1 1 1 Helicase conserved C-terminal domain UVR PF02151.14 gi|433589507|ref|YP_007279003.1| - 1.3e-09 37.2 7.3 1.3e-09 37.2 5.1 2.7 2 0 0 2 2 2 1 UvrB/uvrC motif ResIII PF04851.10 gi|433589507|ref|YP_007279003.1| - 1.4e-09 38.0 0.0 1.3e-08 34.9 0.0 2.3 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit DEAD PF00270.24 gi|433589507|ref|YP_007279003.1| - 1.3e-05 24.7 0.1 0.00082 18.9 0.0 3.3 2 1 1 3 3 3 1 DEAD/DEAH box helicase AAA_19 PF13245.1 gi|433589507|ref|YP_007279003.1| - 0.0096 15.6 0.4 8.8 6.1 0.0 3.2 4 0 0 4 4 4 2 Part of AAA domain UB2H PF14814.1 gi|433589507|ref|YP_007279003.1| - 0.011 15.4 0.0 0.026 14.2 0.0 1.6 1 0 0 1 1 1 0 Bifunctional transglycosylase second domain DUF87 PF01935.12 gi|433589507|ref|YP_007279003.1| - 0.024 14.4 3.6 0.042 13.6 0.0 3.0 3 1 1 4 4 4 0 Domain of unknown function DUF87 TAT_signal PF10518.4 gi|433589509|ref|YP_007279005.1| - 0.025 14.5 1.1 0.044 13.7 0.8 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence DUF2899 PF11449.3 gi|433589510|ref|YP_007279006.1| - 7.7e-72 241.9 12.8 2.5e-70 237.0 6.3 1.8 1 1 1 2 2 2 2 Protein of unknown function (DUF2899) NrfD PF03916.9 gi|433589511|ref|YP_007279007.1| - 1.8e-19 70.3 22.4 1.8e-19 70.3 15.5 1.9 2 0 0 2 2 2 1 Polysulphide reductase, NrfD Acetyltransf_1 PF00583.19 gi|433589512|ref|YP_007279008.1| - 2.1e-12 46.8 0.0 3.1e-12 46.3 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|433589512|ref|YP_007279008.1| - 5e-11 42.7 0.0 5.9e-11 42.5 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|433589512|ref|YP_007279008.1| - 6.9e-11 42.1 0.0 9.7e-11 41.6 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|433589512|ref|YP_007279008.1| - 8.6e-09 35.5 0.0 1.1e-08 35.1 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|433589512|ref|YP_007279008.1| - 0.00017 21.7 0.0 0.00021 21.4 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|433589512|ref|YP_007279008.1| - 0.00019 21.0 0.0 0.0003 20.5 0.0 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.1 gi|433589512|ref|YP_007279008.1| - 0.001 18.8 0.5 0.019 14.8 0.3 2.2 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.1 gi|433589512|ref|YP_007279008.1| - 0.0056 16.6 0.3 0.0089 15.9 0.2 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain GNAT_acetyltr_2 PF13718.1 gi|433589512|ref|YP_007279008.1| - 0.12 11.7 0.0 0.15 11.4 0.0 1.3 1 0 0 1 1 1 0 GNAT acetyltransferase 2 Acetyltransf_1 PF00583.19 gi|433589513|ref|YP_007279009.1| - 7.3e-15 54.7 0.1 1.1e-14 54.2 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|433589513|ref|YP_007279009.1| - 2.3e-13 50.0 0.0 3.1e-13 49.6 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|433589513|ref|YP_007279009.1| - 3.9e-13 49.5 0.1 4.9e-13 49.2 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|433589513|ref|YP_007279009.1| - 3.1e-11 43.2 0.1 5.5e-11 42.4 0.1 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|433589513|ref|YP_007279009.1| - 2.9e-08 33.9 0.0 3.4e-08 33.7 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|433589513|ref|YP_007279009.1| - 4.1e-08 33.3 0.0 5.2e-08 32.9 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|433589513|ref|YP_007279009.1| - 1.2e-07 31.3 0.0 1.7e-07 30.8 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_6 PF13480.1 gi|433589513|ref|YP_007279009.1| - 6.2e-07 29.4 1.7 8.7e-07 28.9 1.2 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|433589513|ref|YP_007279009.1| - 0.00054 19.8 0.5 0.0012 18.7 0.3 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|433589513|ref|YP_007279009.1| - 0.0044 16.8 0.2 0.0085 15.9 0.1 1.5 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase GNAT_acetyltr_2 PF13718.1 gi|433589513|ref|YP_007279009.1| - 0.091 12.0 0.0 0.11 11.7 0.0 1.2 1 0 0 1 1 1 0 GNAT acetyltransferase 2 Mec-17 PF05301.6 gi|433589513|ref|YP_007279009.1| - 0.12 12.2 0.0 0.17 11.8 0.0 1.2 1 0 0 1 1 1 0 Touch receptor neuron protein Mec-17 SUI1 PF01253.17 gi|433589514|ref|YP_007279010.1| - 1.3e-20 73.0 0.0 1.8e-20 72.4 0.0 1.2 1 0 0 1 1 1 1 Translation initiation factor SUI1 Linocin_M18 PF04454.7 gi|433589514|ref|YP_007279010.1| - 0.051 12.4 0.0 0.06 12.2 0.0 1.0 1 0 0 1 1 1 0 Encapsulating protein for peroxidase Img2 PF05046.9 gi|433589514|ref|YP_007279010.1| - 0.057 13.6 0.0 0.075 13.2 0.0 1.5 1 1 0 1 1 1 0 Mitochondrial large subunit ribosomal protein (Img2) YihI PF04220.7 gi|433589514|ref|YP_007279010.1| - 0.13 11.5 1.6 0.18 11.1 1.1 1.2 1 0 0 1 1 1 0 Der GTPase activator (YihI) UvrC_HhH_N PF08459.6 gi|433589515|ref|YP_007279011.1| - 6.4e-44 149.2 0.0 1.1e-43 148.3 0.0 1.4 1 0 0 1 1 1 1 UvrC Helix-hairpin-helix N-terminal HHH PF00633.18 gi|433589515|ref|YP_007279011.1| - 2.3e-10 39.5 0.2 4.1e-08 32.4 0.1 2.6 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_2 PF12826.2 gi|433589515|ref|YP_007279011.1| - 1.1e-09 38.0 0.0 2.4e-09 36.9 0.0 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|433589515|ref|YP_007279011.1| - 2.3e-09 37.2 0.1 7.8e-09 35.5 0.0 2.0 1 0 0 1 1 1 1 Helix-hairpin-helix domain UVR PF02151.14 gi|433589515|ref|YP_007279011.1| - 1.4e-08 33.9 5.1 2.9e-08 32.9 1.4 2.5 2 0 0 2 2 2 1 UvrB/uvrC motif GIY-YIG PF01541.19 gi|433589515|ref|YP_007279011.1| - 7.3e-08 32.6 0.0 1.4e-07 31.7 0.0 1.4 1 0 0 1 1 1 1 GIY-YIG catalytic domain 5_3_exonuc PF01367.15 gi|433589515|ref|YP_007279011.1| - 0.0013 18.9 0.1 0.055 13.7 0.0 2.4 1 1 1 2 2 2 1 5'-3' exonuclease, C-terminal SAM fold HHH_3 PF12836.2 gi|433589515|ref|YP_007279011.1| - 0.012 15.4 0.0 0.063 13.2 0.0 2.0 1 1 0 2 2 2 0 Helix-hairpin-helix motif DUF2095 PF09868.4 gi|433589515|ref|YP_007279011.1| - 0.073 12.8 0.3 0.23 11.2 0.2 1.8 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2095) FbpA PF05833.6 gi|433589515|ref|YP_007279011.1| - 0.084 11.4 0.0 0.14 10.6 0.0 1.3 1 0 0 1 1 1 0 Fibronectin-binding protein A N-terminus (FbpA) TMEM125 PF15109.1 gi|433589516|ref|YP_007279012.1| - 0.04 14.0 2.2 0.07 13.2 0.1 2.0 1 1 1 2 2 2 0 TMEM125 protein family DUF202 PF02656.10 gi|433589516|ref|YP_007279012.1| - 0.046 13.9 5.0 0.14 12.4 3.5 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF202) YwiC PF14256.1 gi|433589516|ref|YP_007279012.1| - 0.59 10.2 6.4 6.4 6.8 5.0 2.0 1 1 1 2 2 2 0 YwiC-like protein ABC_tran PF00005.22 gi|433589518|ref|YP_007279014.1| - 4.1e-31 108.1 0.0 7.6e-31 107.2 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|433589518|ref|YP_007279014.1| - 3.8e-13 50.0 0.0 1.5e-07 31.7 0.0 2.2 1 1 1 2 2 2 2 AAA domain DUF4162 PF13732.1 gi|433589518|ref|YP_007279014.1| - 2.7e-05 24.6 0.0 7.6e-05 23.1 0.0 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF4162) SMC_N PF02463.14 gi|433589518|ref|YP_007279014.1| - 0.00038 19.7 0.1 0.11 11.7 0.0 2.2 1 1 1 2 2 2 2 RecF/RecN/SMC N terminal domain DUF258 PF03193.11 gi|433589518|ref|YP_007279014.1| - 0.00043 19.5 0.0 0.00078 18.6 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_23 PF13476.1 gi|433589518|ref|YP_007279014.1| - 0.0023 18.2 0.1 0.004 17.5 0.1 1.3 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.1 gi|433589518|ref|YP_007279014.1| - 0.0034 16.9 0.0 0.01 15.4 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|433589518|ref|YP_007279014.1| - 0.0034 16.8 0.0 0.0071 15.8 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain PhdYeFM_antitox PF02604.14 gi|433589518|ref|YP_007279014.1| - 0.0067 15.9 0.5 3.2 7.4 0.0 3.8 4 0 0 4 4 4 1 Antitoxin Phd_YefM, type II toxin-antitoxin system AAA_10 PF12846.2 gi|433589518|ref|YP_007279014.1| - 0.0086 15.5 0.0 0.2 11.0 0.0 2.2 2 0 0 2 2 2 1 AAA-like domain ArgK PF03308.11 gi|433589518|ref|YP_007279014.1| - 0.009 14.8 0.0 0.015 14.0 0.0 1.3 1 0 0 1 1 1 1 ArgK protein SbcCD_C PF13558.1 gi|433589518|ref|YP_007279014.1| - 0.013 15.3 0.0 0.032 14.1 0.0 1.7 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_16 PF13191.1 gi|433589518|ref|YP_007279014.1| - 0.015 15.3 0.0 0.032 14.2 0.0 1.7 1 1 0 1 1 1 0 AAA ATPase domain AAA_25 PF13481.1 gi|433589518|ref|YP_007279014.1| - 0.018 14.4 0.0 0.054 12.8 0.0 1.8 1 1 0 1 1 1 0 AAA domain IstB_IS21 PF01695.12 gi|433589518|ref|YP_007279014.1| - 0.042 13.2 0.0 2.7 7.3 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein Response_reg PF00072.19 gi|433589518|ref|YP_007279014.1| - 0.1 12.6 0.1 3.3 7.7 0.0 2.5 2 0 0 2 2 2 0 Response regulator receiver domain MMR_HSR1 PF01926.18 gi|433589518|ref|YP_007279014.1| - 0.12 12.3 0.0 0.2 11.5 0.0 1.8 1 1 0 1 1 1 0 50S ribosome-binding GTPase ABC2_membrane_2 PF12679.2 gi|433589519|ref|YP_007279015.1| - 3.4e-46 157.3 15.3 4e-46 157.0 10.6 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|433589519|ref|YP_007279015.1| - 1.5e-17 63.5 13.9 1.5e-17 63.5 9.6 1.9 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|433589519|ref|YP_007279015.1| - 2.1e-08 33.5 17.3 2.1e-08 33.5 12.0 2.4 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|433589519|ref|YP_007279015.1| - 2e-05 23.8 12.0 2e-05 23.8 8.3 1.6 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_5 PF13346.1 gi|433589519|ref|YP_007279015.1| - 0.0003 20.1 12.0 0.0003 20.1 8.3 2.4 2 1 0 2 2 2 1 ABC-2 family transporter protein 7tm_7 PF08395.7 gi|433589519|ref|YP_007279015.1| - 5.6 5.8 13.6 0.62 9.0 5.3 2.2 2 1 0 2 2 2 0 7tm Chemosensory receptor ArsA_ATPase PF02374.10 gi|433589520|ref|YP_007279016.1| - 2.8e-78 263.0 0.0 3.3e-78 262.8 0.0 1.0 1 0 0 1 1 1 1 Anion-transporting ATPase CbiA PF01656.18 gi|433589520|ref|YP_007279016.1| - 1.1e-10 41.3 0.0 1.8e-09 37.2 0.0 2.3 2 0 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|433589520|ref|YP_007279016.1| - 0.00025 21.0 0.1 0.00085 19.2 0.0 1.9 2 0 0 2 2 2 1 AAA domain Fer4_NifH PF00142.13 gi|433589520|ref|YP_007279016.1| - 0.0011 18.1 0.7 0.0025 17.0 0.0 1.8 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_10 PF12846.2 gi|433589520|ref|YP_007279016.1| - 0.0042 16.5 0.0 0.0067 15.8 0.0 1.5 1 1 0 1 1 1 1 AAA-like domain AAA_25 PF13481.1 gi|433589520|ref|YP_007279016.1| - 0.0071 15.7 11.2 0.018 14.4 3.6 3.1 1 1 0 2 2 2 1 AAA domain SRP54 PF00448.17 gi|433589520|ref|YP_007279016.1| - 0.021 14.2 0.3 0.15 11.5 0.1 2.0 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_19 PF13245.1 gi|433589520|ref|YP_007279016.1| - 0.056 13.1 2.0 0.13 12.0 0.1 2.5 3 0 0 3 3 3 0 Part of AAA domain PhoH PF02562.11 gi|433589520|ref|YP_007279016.1| - 0.063 12.5 0.0 0.19 10.9 0.0 1.7 2 0 0 2 2 2 0 PhoH-like protein YhjQ PF06564.7 gi|433589520|ref|YP_007279016.1| - 0.084 12.2 0.0 0.13 11.6 0.0 1.3 1 0 0 1 1 1 0 YhjQ protein ATP_bind_1 PF03029.12 gi|433589520|ref|YP_007279016.1| - 0.15 11.6 0.2 0.74 9.3 0.1 2.0 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein Methyltransf_24 PF13578.1 gi|433589520|ref|YP_007279016.1| - 0.19 12.5 1.7 0.92 10.3 1.2 2.1 1 1 0 1 1 1 0 Methyltransferase domain CobA_CobO_BtuR PF02572.10 gi|433589520|ref|YP_007279016.1| - 0.22 11.1 0.5 27 4.3 0.1 2.9 3 0 0 3 3 3 0 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP DUF1700 PF08006.6 gi|433589521|ref|YP_007279017.1| - 0.13 11.5 2.1 0.16 11.2 1.4 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1700) FtsX PF02687.16 gi|433589521|ref|YP_007279017.1| - 0.66 9.7 7.9 0.84 9.4 5.4 1.1 1 0 0 1 1 1 0 FtsX-like permease family Gram_pos_anchor PF00746.16 gi|433589522|ref|YP_007279018.1| - 0.0033 17.1 4.5 0.054 13.3 0.2 2.1 2 0 0 2 2 2 2 Gram positive anchor SdpI PF13630.1 gi|433589522|ref|YP_007279018.1| - 0.024 14.3 2.5 0.031 13.9 1.7 1.1 1 0 0 1 1 1 0 SdpI/YhfL protein family Polysacc_synt_C PF14667.1 gi|433589522|ref|YP_007279018.1| - 0.03 14.1 2.3 0.036 13.8 1.6 1.1 1 0 0 1 1 1 0 Polysaccharide biosynthesis C-terminal domain DUF4191 PF13829.1 gi|433589522|ref|YP_007279018.1| - 0.046 12.8 0.9 0.047 12.8 0.7 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4191) MFS_2 PF13347.1 gi|433589522|ref|YP_007279018.1| - 0.068 11.5 0.2 0.071 11.4 0.1 1.0 1 0 0 1 1 1 0 MFS/sugar transport protein SKG6 PF08693.5 gi|433589522|ref|YP_007279018.1| - 0.073 12.3 9.3 1.1 8.6 3.1 2.2 2 0 0 2 2 2 0 Transmembrane alpha-helix domain Rick_17kDa_Anti PF05433.10 gi|433589522|ref|YP_007279018.1| - 0.082 12.5 1.8 0.27 10.9 0.3 2.0 2 0 0 2 2 2 0 Glycine zipper 2TM domain Multi_Drug_Res PF00893.14 gi|433589522|ref|YP_007279018.1| - 0.086 13.3 0.7 0.14 12.5 0.5 1.4 1 1 0 1 1 1 0 Small Multidrug Resistance protein PAP2 PF01569.16 gi|433589522|ref|YP_007279018.1| - 0.17 11.5 1.2 0.18 11.4 0.8 1.1 1 0 0 1 1 1 0 PAP2 superfamily DUF4231 PF14015.1 gi|433589522|ref|YP_007279018.1| - 0.21 11.6 2.8 0.24 11.4 2.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4231) DUF4401 PF14351.1 gi|433589522|ref|YP_007279018.1| - 0.25 10.3 3.0 0.27 10.1 2.1 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4401) MotA_ExbB PF01618.11 gi|433589522|ref|YP_007279018.1| - 1.7 8.2 4.1 6.5 6.3 0.1 2.0 2 0 0 2 2 2 0 MotA/TolQ/ExbB proton channel family DNA_ligase_aden PF01653.13 gi|433589523|ref|YP_007279019.1| - 6.4e-106 353.8 0.0 9e-106 353.3 0.0 1.2 1 0 0 1 1 1 1 NAD-dependent DNA ligase adenylation domain DNA_ligase_OB PF03120.11 gi|433589523|ref|YP_007279019.1| - 1.6e-29 101.4 1.2 3.3e-29 100.3 0.8 1.5 1 0 0 1 1 1 1 NAD-dependent DNA ligase OB-fold domain HHH_2 PF12826.2 gi|433589523|ref|YP_007279019.1| - 2.2e-19 69.1 0.4 1.9e-17 62.8 0.0 2.7 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|433589523|ref|YP_007279019.1| - 4.2e-18 65.2 6.6 9.1e-11 41.7 0.8 3.8 4 0 0 4 4 4 2 Helix-hairpin-helix domain BRCT PF00533.21 gi|433589523|ref|YP_007279019.1| - 1.2e-10 41.4 0.0 2.7e-10 40.2 0.0 1.6 1 0 0 1 1 1 1 BRCA1 C Terminus (BRCT) domain HHH PF00633.18 gi|433589523|ref|YP_007279019.1| - 2.5e-06 26.8 0.1 1.4 8.7 0.0 4.7 4 0 0 4 4 4 2 Helix-hairpin-helix motif DNA_ligase_ZBD PF03119.11 gi|433589523|ref|YP_007279019.1| - 1.4e-05 24.6 2.9 1.4e-05 24.6 2.0 2.4 2 0 0 2 2 2 1 NAD-dependent DNA ligase C4 zinc finger domain 5_3_exonuc PF01367.15 gi|433589523|ref|YP_007279019.1| - 0.062 13.5 0.0 0.64 10.2 0.0 2.5 2 1 0 2 2 2 0 5'-3' exonuclease, C-terminal SAM fold Fer2 PF00111.22 gi|433589524|ref|YP_007279020.1| - 1.8e-09 37.2 0.0 2.9e-09 36.5 0.0 1.3 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain SBP56 PF05694.6 gi|433589525|ref|YP_007279021.1| - 1.3e-195 650.3 0.2 1.4e-195 650.1 0.1 1.0 1 0 0 1 1 1 1 56kDa selenium binding protein (SBP56) Lactonase PF10282.4 gi|433589525|ref|YP_007279021.1| - 0.15 11.1 0.0 0.82 8.6 0.0 2.1 2 1 0 2 2 2 0 Lactonase, 7-bladed beta-propeller Fer2 PF00111.22 gi|433589526|ref|YP_007279022.1| - 4.8e-11 42.2 1.1 3.3e-10 39.5 0.8 2.0 1 1 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Na_H_antiporter PF03553.9 gi|433589527|ref|YP_007279023.1| - 5e-59 199.8 42.8 1.2e-54 185.3 17.0 2.1 1 1 1 2 2 2 2 Na+/H+ antiporter family Gate PF07670.9 gi|433589527|ref|YP_007279023.1| - 0.0061 16.4 2.6 0.0061 16.4 1.8 3.7 2 1 0 2 2 2 1 Nucleoside recognition RIO1 PF01163.17 gi|433589528|ref|YP_007279024.1| - 5.1e-60 202.0 0.1 2.7e-59 199.7 0.0 1.8 2 0 0 2 2 2 1 RIO1 family APH PF01636.18 gi|433589528|ref|YP_007279024.1| - 1.3e-11 44.6 0.4 6.9e-06 25.9 0.0 2.8 1 1 1 2 2 2 2 Phosphotransferase enzyme family Pkinase PF00069.20 gi|433589528|ref|YP_007279024.1| - 4.7e-06 25.9 0.0 9.3e-06 24.9 0.0 1.4 1 1 0 1 1 1 1 Protein kinase domain Kdo PF06293.9 gi|433589528|ref|YP_007279024.1| - 9.7e-06 24.7 0.0 0.00017 20.7 0.0 2.3 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family VQ PF05678.9 gi|433589528|ref|YP_007279024.1| - 0.14 11.2 0.0 0.25 10.3 0.0 1.5 1 0 0 1 1 1 0 VQ motif Metallophos_2 PF12850.2 gi|433589529|ref|YP_007279025.1| - 2.2e-29 102.3 2.0 2.5e-29 102.1 1.4 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|433589529|ref|YP_007279025.1| - 0.00011 21.6 5.5 0.0011 18.4 0.2 2.7 1 1 0 2 2 2 2 Calcineurin-like phosphoesterase Metallophos_3 PF14582.1 gi|433589529|ref|YP_007279025.1| - 0.0022 17.1 0.0 0.13 11.3 0.0 2.1 2 0 0 2 2 2 2 Metallophosphoesterase, calcineurin superfamily DUF2188 PF09954.4 gi|433589529|ref|YP_007279025.1| - 0.079 12.8 0.1 0.39 10.6 0.0 2.1 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2188) AraC_binding_2 PF14525.1 gi|433589529|ref|YP_007279025.1| - 0.096 12.2 0.8 0.13 11.7 0.6 1.2 1 0 0 1 1 1 0 AraC-binding-like domain KH_1 PF00013.24 gi|433589530|ref|YP_007279026.1| - 5.1e-16 58.0 2.8 2.5e-08 33.4 0.3 2.2 2 0 0 2 2 2 2 KH domain KH_3 PF13014.1 gi|433589530|ref|YP_007279026.1| - 7.4e-09 35.0 0.8 0.00039 20.0 0.1 2.5 2 0 0 2 2 2 2 KH domain KH_2 PF07650.12 gi|433589530|ref|YP_007279026.1| - 9.2e-06 25.1 2.1 0.0037 16.8 0.0 2.5 2 1 0 2 2 2 2 KH domain KH_4 PF13083.1 gi|433589530|ref|YP_007279026.1| - 0.46 10.1 6.7 3.8 7.2 0.2 2.9 2 2 0 2 2 2 0 KH domain Cpn60_TCP1 PF00118.19 gi|433589531|ref|YP_007279027.1| - 2.5e-164 547.5 6.7 2.8e-164 547.3 4.6 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family P-II PF00543.17 gi|433589531|ref|YP_007279027.1| - 0.19 12.1 2.7 4.9 7.6 0.0 3.3 3 0 0 3 3 3 0 Nitrogen regulatory protein P-II OCD_Mu_crystall PF02423.10 gi|433589532|ref|YP_007279028.1| - 1e-90 303.7 0.5 1.1e-90 303.5 0.4 1.0 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family DUF2071 PF09844.4 gi|433589533|ref|YP_007279029.1| - 8e-56 188.8 0.0 9.1e-56 188.6 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (COG2071) ADC PF06314.6 gi|433589533|ref|YP_007279029.1| - 1.7e-05 24.2 0.0 2.8e-05 23.5 0.0 1.3 1 0 0 1 1 1 1 Acetoacetate decarboxylase (ADC) tRNA-synt_1 PF00133.17 gi|433589534|ref|YP_007279030.1| - 1.6e-75 254.3 1.6 4.3e-28 97.6 0.0 4.9 1 1 3 4 4 4 4 tRNA synthetases class I (I, L, M and V) tRNA-synt_1_2 PF13603.1 gi|433589534|ref|YP_007279030.1| - 4.5e-58 195.5 0.0 9.7e-58 194.5 0.0 1.6 2 0 0 2 2 2 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1g PF09334.6 gi|433589534|ref|YP_007279030.1| - 7.5e-42 143.3 0.0 4.6e-25 88.1 0.0 4.1 3 1 0 3 3 3 2 tRNA synthetases class I (M) Anticodon_1 PF08264.8 gi|433589534|ref|YP_007279030.1| - 6.2e-16 58.5 0.0 1.2e-15 57.5 0.0 1.5 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1e PF01406.14 gi|433589534|ref|YP_007279030.1| - 4.7e-09 35.7 0.0 2.5e-06 26.8 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.13 gi|433589534|ref|YP_007279030.1| - 4e-06 25.7 0.0 0.00057 18.6 0.0 2.5 2 0 0 2 2 2 1 tRNA synthetases class I (K) tRNA-synt_1d PF00750.14 gi|433589534|ref|YP_007279030.1| - 0.0042 15.9 0.0 0.34 9.6 0.0 2.2 2 0 0 2 2 2 1 tRNA synthetases class I (R) DZR PF12773.2 gi|433589534|ref|YP_007279030.1| - 0.009 15.8 5.9 0.058 13.2 0.3 2.5 2 1 0 2 2 2 1 Double zinc ribbon tRNA-synt_1b PF00579.20 gi|433589534|ref|YP_007279030.1| - 0.11 11.6 0.1 0.32 10.0 0.0 1.7 2 0 0 2 2 2 0 tRNA synthetases class I (W and Y) DNA_ligase_ZBD PF03119.11 gi|433589534|ref|YP_007279030.1| - 0.24 11.1 2.4 2.1 8.1 0.0 3.1 2 1 1 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain Zn-ribbon_8 PF09723.5 gi|433589534|ref|YP_007279030.1| - 0.95 9.4 4.6 2.1 8.3 0.1 3.1 3 0 0 3 3 3 0 Zinc ribbon domain TF_Zn_Ribbon PF08271.7 gi|433589534|ref|YP_007279030.1| - 2 7.8 8.0 8.9 5.7 0.3 3.5 3 0 0 3 3 3 0 TFIIB zinc-binding MMPL PF03176.10 gi|433589535|ref|YP_007279031.1| - 1.6e-37 128.9 16.8 1.2e-20 73.5 1.7 2.4 2 0 0 2 2 2 2 MMPL family Sterol-sensing PF12349.3 gi|433589535|ref|YP_007279031.1| - 7.7e-12 44.9 13.3 3e-07 30.0 0.6 2.7 3 0 0 3 3 3 2 Sterol-sensing domain of SREBP cleavage-activation Patched PF02460.13 gi|433589535|ref|YP_007279031.1| - 6.9e-10 37.5 21.9 9e-08 30.5 3.1 2.2 2 0 0 2 2 2 2 Patched family ACR_tran PF00873.14 gi|433589535|ref|YP_007279031.1| - 7.8 3.7 9.2 14 2.9 6.4 1.3 1 0 0 1 1 1 0 AcrB/AcrD/AcrF family DUF2177 PF09945.4 gi|433589536|ref|YP_007279032.1| - 0.024 14.6 0.2 0.024 14.6 0.1 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2177) DUF2530 PF10745.4 gi|433589536|ref|YP_007279032.1| - 0.045 13.7 1.0 0.054 13.4 0.7 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2530) TrkH PF02386.11 gi|433589537|ref|YP_007279033.1| - 5.4e-61 206.1 14.8 6.7e-60 202.5 7.0 2.3 1 1 1 2 2 2 2 Cation transport protein TrkA_N PF02254.13 gi|433589538|ref|YP_007279034.1| - 7e-25 87.2 0.4 1.3e-24 86.3 0.3 1.5 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.16 gi|433589538|ref|YP_007279034.1| - 2.2e-09 36.7 1.8 6.6e-09 35.2 0.1 2.2 2 0 0 2 2 2 1 TrkA-C domain F420_oxidored PF03807.12 gi|433589538|ref|YP_007279034.1| - 0.0013 19.1 0.2 0.0084 16.5 0.0 2.3 2 1 1 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent Shikimate_DH PF01488.15 gi|433589538|ref|YP_007279034.1| - 0.0049 16.9 0.3 0.0093 16.0 0.2 1.7 1 1 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase NAD_binding_10 PF13460.1 gi|433589538|ref|YP_007279034.1| - 0.0066 16.4 0.2 0.013 15.5 0.1 1.6 1 0 0 1 1 1 1 NADH(P)-binding XdhC_C PF13478.1 gi|433589538|ref|YP_007279034.1| - 0.01 16.1 0.2 0.019 15.2 0.1 1.4 1 1 0 1 1 1 0 XdhC Rossmann domain Saccharop_dh PF03435.13 gi|433589538|ref|YP_007279034.1| - 0.014 14.4 0.3 0.02 13.9 0.2 1.2 1 0 0 1 1 1 0 Saccharopine dehydrogenase ADH_zinc_N PF00107.21 gi|433589538|ref|YP_007279034.1| - 0.023 14.2 0.0 0.19 11.2 0.0 2.3 2 1 1 3 3 3 0 Zinc-binding dehydrogenase ApbA PF02558.11 gi|433589538|ref|YP_007279034.1| - 0.037 13.4 0.1 0.066 12.6 0.0 1.5 1 1 0 1 1 1 0 Ketopantoate reductase PanE/ApbA HSP20 PF00011.16 gi|433589540|ref|YP_007279036.1| - 4.5e-19 68.2 0.0 6.5e-19 67.6 0.0 1.2 1 0 0 1 1 1 1 Hsp20/alpha crystallin family AhpC-TSA PF00578.16 gi|433589541|ref|YP_007279037.1| - 1.2e-32 112.1 0.0 1.5e-32 111.8 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|433589541|ref|YP_007279037.1| - 8.3e-20 70.8 0.0 9.3e-20 70.6 0.0 1.0 1 0 0 1 1 1 1 Redoxin AhpC-TSA_2 PF13911.1 gi|433589541|ref|YP_007279037.1| - 5.7e-08 32.6 0.0 7.5e-08 32.3 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA antioxidant enzyme DUF899 PF05988.7 gi|433589541|ref|YP_007279037.1| - 0.00047 19.6 0.0 0.00058 19.3 0.0 1.1 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF899) DUF2613 PF11021.3 gi|433589542|ref|YP_007279038.1| - 0.041 13.6 0.1 0.046 13.4 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2613) DUF2895 PF11444.3 gi|433589542|ref|YP_007279038.1| - 0.14 11.3 0.0 0.15 11.2 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2895) PDT PF00800.13 gi|433589543|ref|YP_007279039.1| - 6.2e-49 166.0 0.0 8.1e-49 165.6 0.0 1.1 1 0 0 1 1 1 1 Prephenate dehydratase ACT PF01842.20 gi|433589543|ref|YP_007279039.1| - 8.7e-07 28.2 0.0 2.7e-06 26.7 0.0 1.9 1 0 0 1 1 1 1 ACT domain MFS_1 PF07690.11 gi|433589544|ref|YP_007279040.1| - 1.1e-34 119.7 43.8 1.1e-34 119.7 30.3 1.4 2 0 0 2 2 2 1 Major Facilitator Superfamily MFS_1_like PF12832.2 gi|433589544|ref|YP_007279040.1| - 1.5e-05 24.7 4.0 5.2e-05 22.9 0.5 2.7 2 0 0 2 2 2 1 MFS_1 like family DUF3154 PF11351.3 gi|433589544|ref|YP_007279040.1| - 0.088 12.5 5.4 2.3 7.9 0.1 3.5 2 1 1 3 3 3 0 Protein of unknown function (DUF3154) MC1 PF05854.6 gi|433589545|ref|YP_007279041.1| - 3.6e-46 155.0 0.2 4.1e-46 154.8 0.1 1.0 1 0 0 1 1 1 1 Non-histone chromosomal protein MC1 SymE_toxin PF08845.5 gi|433589546|ref|YP_007279042.1| - 4.9e-05 23.0 0.0 5.3e-05 22.9 0.0 1.1 1 0 0 1 1 1 1 Toxin SymE, type I toxin-antitoxin system Antitoxin-MazE PF04014.13 gi|433589546|ref|YP_007279042.1| - 0.016 14.9 0.7 0.025 14.2 0.5 1.4 1 0 0 1 1 1 0 Antidote-toxin recognition MazE B5 PF03484.10 gi|433589547|ref|YP_007279043.1| - 1.1e-15 57.2 0.2 2.4e-14 52.8 0.1 2.7 3 0 0 3 3 3 1 tRNA synthetase B5 domain B3_4 PF03483.12 gi|433589547|ref|YP_007279043.1| - 1.2e-12 47.6 0.0 1.9e-12 46.9 0.0 1.3 1 0 0 1 1 1 1 B3/4 domain tRNA-synt_2d PF01409.15 gi|433589547|ref|YP_007279043.1| - 0.0019 17.4 0.0 0.0036 16.5 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) DUF433 PF04255.9 gi|433589547|ref|YP_007279043.1| - 0.23 10.9 1.5 25 4.3 0.0 3.4 3 0 0 3 3 3 0 Protein of unknown function (DUF433) tRNA-synt_2d PF01409.15 gi|433589548|ref|YP_007279044.1| - 2.8e-80 269.0 0.0 3.6e-80 268.7 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) HTH_27 PF13463.1 gi|433589548|ref|YP_007279044.1| - 2.7e-06 27.5 1.9 0.0024 18.1 0.0 3.3 2 1 1 3 3 3 1 Winged helix DNA-binding domain MarR PF01047.17 gi|433589548|ref|YP_007279044.1| - 1e-05 25.1 0.0 0.039 13.6 0.0 2.9 3 0 0 3 3 3 2 MarR family tRNA-synt_2 PF00152.15 gi|433589548|ref|YP_007279044.1| - 1.3e-05 24.1 1.4 0.01 14.6 0.2 3.0 3 0 0 3 3 3 2 tRNA synthetases class II (D, K and N) MarR_2 PF12802.2 gi|433589548|ref|YP_007279044.1| - 4e-05 23.2 1.3 0.022 14.4 0.1 2.9 2 1 0 2 2 2 2 MarR family TrmB PF01978.14 gi|433589548|ref|YP_007279044.1| - 0.019 14.6 0.1 4.7 7.0 0.0 2.9 2 1 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|433589548|ref|YP_007279044.1| - 0.023 14.2 0.5 0.087 12.4 0.0 2.3 2 0 0 2 2 2 0 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|433589548|ref|YP_007279044.1| - 0.039 13.3 0.0 0.079 12.3 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding RPA_C PF08784.6 gi|433589548|ref|YP_007279044.1| - 0.057 13.8 0.0 0.15 12.4 0.0 1.6 1 0 0 1 1 1 0 Replication protein A C terminal tRNA-synt_2b PF00587.20 gi|433589548|ref|YP_007279044.1| - 0.059 12.9 0.0 0.11 12.1 0.0 1.5 1 0 0 1 1 1 0 tRNA synthetase class II core domain (G, H, P, S and T) DUF2250 PF10007.4 gi|433589548|ref|YP_007279044.1| - 0.078 12.8 0.0 18 5.2 0.0 2.5 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) Rrf2 PF02082.15 gi|433589548|ref|YP_007279044.1| - 0.12 12.4 0.0 0.31 11.1 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator PAS_4 PF08448.5 gi|433589550|ref|YP_007279046.1| - 1.3e-25 89.5 3.1 3.3e-12 46.4 0.1 2.9 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.1 gi|433589550|ref|YP_007279046.1| - 1.8e-21 76.4 0.0 3e-09 37.1 0.0 2.7 2 0 0 2 2 2 2 PAS domain HATPase_c PF02518.21 gi|433589550|ref|YP_007279046.1| - 2.8e-19 68.8 0.0 6.3e-19 67.7 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|433589550|ref|YP_007279046.1| - 3.4e-12 46.1 0.1 2.4e-11 43.4 0.0 2.4 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS PF00989.19 gi|433589550|ref|YP_007279046.1| - 5.4e-06 26.1 0.0 0.00067 19.4 0.0 2.8 2 0 0 2 2 2 1 PAS fold PAS_8 PF13188.1 gi|433589550|ref|YP_007279046.1| - 0.004 16.9 0.5 0.16 11.9 0.0 3.1 3 0 0 3 3 3 1 PAS domain HATPase_c_3 PF13589.1 gi|433589550|ref|YP_007279046.1| - 0.01 15.4 0.0 0.022 14.3 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase zf-HC2 PF13490.1 gi|433589550|ref|YP_007279046.1| - 0.13 12.1 0.8 1.1 9.2 0.3 2.6 2 0 0 2 2 2 0 Putative zinc-finger tRNA-synt_1b PF00579.20 gi|433589551|ref|YP_007279047.1| - 9.5e-44 149.6 0.0 4.1e-26 91.7 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class I (W and Y) OCD_Mu_crystall PF02423.10 gi|433589552|ref|YP_007279048.1| - 3.6e-44 150.8 0.2 4.3e-44 150.5 0.1 1.0 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family F420_oxidored PF03807.12 gi|433589552|ref|YP_007279048.1| - 0.0013 19.1 0.2 0.003 17.9 0.0 1.7 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent Shikimate_DH PF01488.15 gi|433589552|ref|YP_007279048.1| - 0.002 18.1 0.0 0.0034 17.4 0.0 1.3 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase UDPG_MGDP_dh_C PF03720.10 gi|433589552|ref|YP_007279048.1| - 0.0076 16.3 0.2 0.17 12.0 0.0 2.6 2 1 1 3 3 3 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain GFO_IDH_MocA PF01408.17 gi|433589552|ref|YP_007279048.1| - 0.085 13.3 0.0 0.24 11.9 0.0 1.9 2 0 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold tRNA_int_endo PF01974.12 gi|433589553|ref|YP_007279049.1| - 4.3e-32 109.7 0.0 1.3e-23 82.6 0.0 2.7 2 1 0 2 2 2 2 tRNA intron endonuclease, catalytic C-terminal domain tRNA_int_endo_N PF02778.9 gi|433589553|ref|YP_007279049.1| - 1.9e-25 88.2 0.3 1.4e-11 43.7 0.0 2.6 3 0 0 3 3 3 2 tRNA intron endonuclease, N-terminal domain tRNA_int_end_N2 PF12928.2 gi|433589553|ref|YP_007279049.1| - 0.058 12.8 0.1 13 5.3 0.0 2.4 2 0 0 2 2 2 0 tRNA-splicing endonuclease subunit sen54 N-term DctQ PF04290.7 gi|433589554|ref|YP_007279050.1| - 1.8 8.3 11.5 0.48 10.1 3.2 2.2 2 0 0 2 2 2 0 Tripartite ATP-independent periplasmic transporters, DctQ component DUF2530 PF10745.4 gi|433589554|ref|YP_007279050.1| - 3.6 7.6 13.9 1.8 8.6 1.8 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2530) DUF91 PF01939.11 gi|433589555|ref|YP_007279051.1| - 0.00067 18.8 0.0 0.00088 18.4 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF91 zf-C4_Topoisom PF01396.14 gi|433589555|ref|YP_007279051.1| - 0.012 15.1 0.3 0.012 15.1 0.2 3.1 3 0 0 3 3 3 0 Topoisomerase DNA binding C4 zinc finger zinc-ribbons_6 PF07191.7 gi|433589555|ref|YP_007279051.1| - 2.2 8.1 6.4 1.4 8.7 1.7 2.3 2 0 0 2 2 2 0 zinc-ribbons GvpG PF05120.7 gi|433589556|ref|YP_007279052.1| - 0.0023 17.6 0.8 0.0072 16.1 0.5 1.8 2 0 0 2 2 2 1 Gas vesicle protein G HR1 PF02185.11 gi|433589556|ref|YP_007279052.1| - 0.029 14.1 0.2 0.048 13.4 0.2 1.3 1 0 0 1 1 1 0 Hr1 repeat Pox_A_type_inc PF04508.7 gi|433589556|ref|YP_007279052.1| - 0.13 12.0 0.7 0.29 11.0 0.5 1.6 1 0 0 1 1 1 0 Viral A-type inclusion protein repeat DUF3450 PF11932.3 gi|433589556|ref|YP_007279052.1| - 2.3 7.3 7.6 4.8 6.3 5.3 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3450) HTH_27 PF13463.1 gi|433589557|ref|YP_007279053.1| - 0.03 14.6 0.1 0.062 13.6 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain TrbC PF04956.8 gi|433589558|ref|YP_007279054.1| - 0.11 12.4 0.0 0.13 12.2 0.0 1.1 1 0 0 1 1 1 0 TrbC/VIRB2 family DUF4066 PF13278.1 gi|433589562|ref|YP_007279058.1| - 1.8e-34 118.4 0.2 2.1e-34 118.2 0.1 1.0 1 0 0 1 1 1 1 Putative amidotransferase DJ-1_PfpI PF01965.19 gi|433589562|ref|YP_007279058.1| - 3e-15 55.9 0.2 4e-15 55.5 0.1 1.2 1 0 0 1 1 1 1 DJ-1/PfpI family GATase_3 PF07685.9 gi|433589562|ref|YP_007279058.1| - 0.0002 20.9 0.0 0.0085 15.6 0.0 2.1 2 0 0 2 2 2 2 CobB/CobQ-like glutamine amidotransferase domain HAD_2 PF13419.1 gi|433589563|ref|YP_007279059.1| - 1.5e-26 93.7 1.5 1.8e-26 93.4 1.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|433589563|ref|YP_007279059.1| - 2.3e-14 54.3 0.8 6.6e-12 46.2 0.5 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|433589563|ref|YP_007279059.1| - 8.9e-11 41.3 0.2 3e-10 39.6 0.2 1.9 2 0 0 2 2 2 1 HAD-hyrolase-like HAD PF12710.2 gi|433589563|ref|YP_007279059.1| - 3.1e-06 27.4 0.9 4.8e-06 26.8 0.6 1.4 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase NT5C PF06941.7 gi|433589563|ref|YP_007279059.1| - 0.15 11.5 0.2 0.23 10.9 0.1 1.5 1 1 0 1 1 1 0 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) DEAD PF00270.24 gi|433589564|ref|YP_007279060.1| - 2.3e-26 92.2 0.0 4.8e-26 91.2 0.0 1.5 1 0 0 1 1 1 1 DEAD/DEAH box helicase Sec63 PF02889.11 gi|433589564|ref|YP_007279060.1| - 2.7e-17 62.9 0.0 3.7e-17 62.5 0.0 1.2 1 0 0 1 1 1 1 Sec63 Brl domain Helicase_C PF00271.26 gi|433589564|ref|YP_007279060.1| - 3.6e-10 39.5 0.0 1.1e-09 37.9 0.0 1.8 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|433589564|ref|YP_007279060.1| - 2.1e-08 34.2 0.0 3.6e-08 33.4 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit HHH_5 PF14520.1 gi|433589564|ref|YP_007279060.1| - 8.9e-05 22.5 1.7 0.00043 20.4 1.2 2.2 1 0 0 1 1 1 1 Helix-hairpin-helix domain DUF1253 PF06862.7 gi|433589564|ref|YP_007279060.1| - 0.024 13.0 0.0 0.035 12.5 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1253) DNA_pol_lambd_f PF10391.4 gi|433589564|ref|YP_007279060.1| - 0.037 13.5 0.0 0.1 12.1 0.0 1.7 1 0 0 1 1 1 0 Fingers domain of DNA polymerase lambda DUF485 PF04341.7 gi|433589565|ref|YP_007279061.1| - 1.3 8.7 4.5 8.1 6.2 1.4 2.5 2 0 0 2 2 2 0 Protein of unknown function, DUF485 bPH_2 PF03703.9 gi|433589566|ref|YP_007279062.1| - 3e-18 65.6 0.1 4.8e-18 64.9 0.1 1.3 1 0 0 1 1 1 1 Bacterial PH domain DUF2371 PF10177.4 gi|433589566|ref|YP_007279062.1| - 0.15 11.9 2.6 0.24 11.2 0.1 2.0 1 1 1 2 2 2 0 Uncharacterised conserved protein (DUF2371) DUF4097 PF13349.1 gi|433589566|ref|YP_007279062.1| - 0.24 10.9 1.7 0.47 9.9 0.0 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4097) DUF3040 PF11239.3 gi|433589566|ref|YP_007279062.1| - 1.6 8.8 3.8 2.9 8.0 2.6 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3040) Radical_SAM PF04055.16 gi|433589567|ref|YP_007279063.1| - 5.8e-13 49.3 0.2 1.1e-12 48.4 0.1 1.5 2 0 0 2 2 2 1 Radical SAM superfamily E1_dh PF00676.15 gi|433589568|ref|YP_007279064.1| - 3.4e-92 308.3 0.0 3.9e-92 308.1 0.0 1.0 1 0 0 1 1 1 1 Dehydrogenase E1 component DXP_synthase_N PF13292.1 gi|433589568|ref|YP_007279064.1| - 1.6e-09 37.0 0.0 2.7e-09 36.3 0.0 1.3 1 0 0 1 1 1 1 1-deoxy-D-xylulose-5-phosphate synthase Transketolase_N PF00456.16 gi|433589568|ref|YP_007279064.1| - 2.6e-06 26.4 0.0 3.5e-06 26.0 0.0 1.3 1 0 0 1 1 1 1 Transketolase, thiamine diphosphate binding domain TPP_enzyme_C PF02775.16 gi|433589568|ref|YP_007279064.1| - 0.00031 20.3 0.1 0.00081 18.9 0.0 1.6 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HTH_41 PF14502.1 gi|433589568|ref|YP_007279064.1| - 0.041 13.5 0.0 0.092 12.3 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Transket_pyr PF02779.19 gi|433589569|ref|YP_007279065.1| - 3.2e-50 170.0 0.0 4.1e-50 169.7 0.0 1.1 1 0 0 1 1 1 1 Transketolase, pyrimidine binding domain Transketolase_C PF02780.15 gi|433589569|ref|YP_007279065.1| - 2.2e-37 127.7 0.0 4e-37 126.9 0.0 1.4 1 0 0 1 1 1 1 Transketolase, C-terminal domain 2-oxoacid_dh PF00198.18 gi|433589570|ref|YP_007279066.1| - 1.5e-89 299.2 0.0 1.9e-89 298.8 0.0 1.1 1 0 0 1 1 1 1 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Biotin_lipoyl PF00364.17 gi|433589570|ref|YP_007279066.1| - 2.6e-23 81.4 1.3 5.5e-23 80.4 0.9 1.6 1 0 0 1 1 1 1 Biotin-requiring enzyme E3_binding PF02817.12 gi|433589570|ref|YP_007279066.1| - 3.4e-22 77.7 2.9 1.9e-15 56.1 0.6 2.8 2 0 0 2 2 2 2 e3 binding domain GCV_H PF01597.14 gi|433589570|ref|YP_007279066.1| - 4.2e-05 23.2 0.2 0.00011 21.8 0.1 1.7 1 0 0 1 1 1 1 Glycine cleavage H-protein HlyD_2 PF12700.2 gi|433589570|ref|YP_007279066.1| - 6.6e-05 22.2 0.6 0.0093 15.1 0.4 2.7 1 1 1 2 2 2 2 HlyD family secretion protein Biotin_lipoyl_2 PF13533.1 gi|433589570|ref|YP_007279066.1| - 0.001 18.6 9.9 0.0035 16.9 0.6 3.2 2 1 1 3 3 3 2 Biotin-lipoyl like HlyD_3 PF13437.1 gi|433589570|ref|YP_007279066.1| - 0.0014 18.9 3.6 0.015 15.6 0.2 3.0 2 1 1 3 3 3 1 HlyD family secretion protein RnfC_N PF13375.1 gi|433589570|ref|YP_007279066.1| - 0.0041 16.8 0.3 0.012 15.3 0.1 1.8 2 0 0 2 2 2 1 RnfC Barrel sandwich hybrid domain Pyr_redox_2 PF07992.9 gi|433589571|ref|YP_007279067.1| - 1.6e-42 145.7 1.4 5.6e-42 143.8 1.0 2.5 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|433589571|ref|YP_007279067.1| - 7.2e-38 129.0 0.7 1.5e-37 127.9 0.1 1.9 2 0 0 2 2 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.22 gi|433589571|ref|YP_007279067.1| - 6.5e-24 84.1 1.1 1e-19 70.6 0.0 3.5 4 0 0 4 4 3 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|433589571|ref|YP_007279067.1| - 2.9e-10 39.5 1.7 3.7e-07 29.3 0.3 2.5 2 0 0 2 2 2 2 Glucose inhibited division protein A FAD_binding_2 PF00890.19 gi|433589571|ref|YP_007279067.1| - 8.9e-09 34.6 6.6 1.4e-06 27.4 0.3 3.3 3 0 0 3 3 3 2 FAD binding domain NAD_binding_8 PF13450.1 gi|433589571|ref|YP_007279067.1| - 6.6e-08 32.4 1.1 0.0024 17.8 0.2 2.6 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain DAO PF01266.19 gi|433589571|ref|YP_007279067.1| - 1.2e-07 31.0 13.3 0.00071 18.5 0.5 4.3 4 1 0 5 5 5 2 FAD dependent oxidoreductase Pyr_redox_3 PF13738.1 gi|433589571|ref|YP_007279067.1| - 1.2e-07 32.0 0.1 4.7e-07 30.0 0.0 1.9 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|433589571|ref|YP_007279067.1| - 1.7e-07 30.1 4.2 1.6e-05 23.5 0.1 3.0 4 0 0 4 4 4 2 HI0933-like protein Thi4 PF01946.12 gi|433589571|ref|YP_007279067.1| - 5.8e-07 28.8 2.9 0.0017 17.4 0.2 3.0 3 0 0 3 3 3 2 Thi4 family FAD_oxidored PF12831.2 gi|433589571|ref|YP_007279067.1| - 1.9e-06 27.2 1.3 1.9e-06 27.2 0.9 1.7 2 0 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|433589571|ref|YP_007279067.1| - 1.3e-05 24.4 2.8 0.03 13.3 0.2 2.3 2 0 0 2 2 2 2 FAD binding domain Lycopene_cycl PF05834.7 gi|433589571|ref|YP_007279067.1| - 2.5e-05 23.3 0.8 0.0099 14.8 0.1 2.6 2 0 0 2 2 2 2 Lycopene cyclase protein 3HCDH_N PF02737.13 gi|433589571|ref|YP_007279067.1| - 2.8e-05 23.8 0.8 0.0014 18.3 0.0 2.6 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.16 gi|433589571|ref|YP_007279067.1| - 0.00015 21.3 0.9 0.038 13.5 0.0 2.6 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain UDPG_MGDP_dh_N PF03721.9 gi|433589571|ref|YP_007279067.1| - 0.0002 20.7 3.4 0.00072 18.9 0.2 2.3 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain TrkA_N PF02254.13 gi|433589571|ref|YP_007279067.1| - 0.00037 20.4 2.5 0.034 14.1 0.0 3.2 3 0 0 3 3 3 1 TrkA-N domain XdhC_C PF13478.1 gi|433589571|ref|YP_007279067.1| - 0.00055 20.2 0.4 0.069 13.4 0.0 3.0 3 0 0 3 3 3 1 XdhC Rossmann domain NAD_binding_7 PF13241.1 gi|433589571|ref|YP_007279067.1| - 0.0012 19.1 0.1 1.1 9.6 0.0 2.7 2 0 0 2 2 2 2 Putative NAD(P)-binding Trp_halogenase PF04820.9 gi|433589571|ref|YP_007279067.1| - 0.006 15.2 2.3 0.014 14.0 0.1 2.1 2 0 0 2 2 2 1 Tryptophan halogenase 2-Hacid_dh_C PF02826.14 gi|433589571|ref|YP_007279067.1| - 0.016 14.3 0.4 0.89 8.6 0.0 2.8 3 0 0 3 3 3 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_9 PF13454.1 gi|433589571|ref|YP_007279067.1| - 0.19 11.4 4.8 2 8.1 0.0 3.3 4 0 0 4 4 4 0 FAD-NAD(P)-binding 7TMR-DISM_7TM PF07695.6 gi|433589572|ref|YP_007279068.1| - 0.023 14.3 10.5 0.028 14.0 7.3 1.2 1 0 0 1 1 1 0 7TM diverse intracellular signalling DUF4191 PF13829.1 gi|433589572|ref|YP_007279068.1| - 0.74 8.8 3.6 0.32 10.0 1.3 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4191) HTH_20 PF12840.2 gi|433589573|ref|YP_007279069.1| - 2.5e-13 49.6 0.2 4.2e-13 48.8 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|433589573|ref|YP_007279069.1| - 0.00012 21.6 0.0 0.00022 20.8 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|433589573|ref|YP_007279069.1| - 0.00023 20.6 0.2 0.00042 19.8 0.1 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.14 gi|433589573|ref|YP_007279069.1| - 0.0005 19.7 0.1 0.0013 18.4 0.0 1.7 2 1 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.15 gi|433589573|ref|YP_007279069.1| - 0.0021 17.6 0.0 0.0033 17.0 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_7 PF02796.10 gi|433589573|ref|YP_007279069.1| - 0.0027 17.5 0.0 0.0057 16.4 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase CENP-B_N PF04218.8 gi|433589573|ref|YP_007279069.1| - 0.0082 15.5 0.0 0.018 14.4 0.0 1.6 1 0 0 1 1 1 1 CENP-B N-terminal DNA-binding domain HTH_11 PF08279.7 gi|433589573|ref|YP_007279069.1| - 0.018 14.6 0.1 0.034 13.7 0.1 1.4 1 0 0 1 1 1 0 HTH domain FUR PF01475.14 gi|433589573|ref|YP_007279069.1| - 0.022 14.6 0.0 0.034 14.0 0.0 1.5 1 1 0 1 1 1 0 Ferric uptake regulator family HTH_26 PF13443.1 gi|433589573|ref|YP_007279069.1| - 0.037 14.2 0.0 0.14 12.4 0.0 1.9 2 0 0 2 2 2 0 Cro/C1-type HTH DNA-binding domain DUF4423 PF14394.1 gi|433589573|ref|YP_007279069.1| - 0.081 12.4 0.0 0.12 11.9 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) PadR PF03551.9 gi|433589573|ref|YP_007279069.1| - 0.12 12.1 0.0 0.18 11.5 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family Pyrophosphatase PF00719.14 gi|433589574|ref|YP_007279070.1| - 0.081 12.3 0.0 0.095 12.1 0.0 1.1 1 0 0 1 1 1 0 Inorganic pyrophosphatase U1snRNP70_N PF12220.3 gi|433589574|ref|YP_007279070.1| - 0.11 12.8 1.0 0.16 12.3 0.7 1.3 1 1 0 1 1 1 0 U1 small nuclear ribonucleoprotein of 70kDa MW N terminal SWIM PF04434.12 gi|433589576|ref|YP_007279072.1| - 5e-05 22.6 0.1 0.00011 21.5 0.1 1.6 1 0 0 1 1 1 1 SWIM zinc finger PrkA PF06798.7 gi|433589576|ref|YP_007279072.1| - 0.06 12.6 0.9 0.12 11.6 0.6 1.4 1 0 0 1 1 1 0 PrkA serine protein kinase C-terminal domain Med29 PF11568.3 gi|433589576|ref|YP_007279072.1| - 0.082 12.9 0.3 0.27 11.3 0.1 1.8 2 0 0 2 2 2 0 Mediator complex subunit 29 TPR_14 PF13428.1 gi|433589576|ref|YP_007279072.1| - 2.1 9.2 7.7 98 4.0 0.0 4.3 3 2 1 4 4 4 0 Tetratricopeptide repeat CagY_I PF14585.1 gi|433589578|ref|YP_007279074.1| - 0.12 12.2 0.4 0.12 12.3 0.3 1.2 1 0 0 1 1 1 0 CagY type 1 repeat BssS PF13991.1 gi|433589579|ref|YP_007279075.1| - 0.02 14.5 0.1 0.027 14.1 0.1 1.3 1 0 0 1 1 1 0 BssS protein family Spectrin PF00435.16 gi|433589579|ref|YP_007279075.1| - 0.05 13.8 0.6 0.072 13.3 0.5 1.2 1 0 0 1 1 1 0 Spectrin repeat Leucyl-specific PF14795.1 gi|433589579|ref|YP_007279075.1| - 0.065 13.1 2.2 0.62 9.9 0.1 2.4 1 1 1 2 2 2 0 Leucine-tRNA synthetase-specific domain DUF892 PF05974.7 gi|433589580|ref|YP_007279076.1| - 1.4e-45 154.9 9.0 1.6e-45 154.7 6.2 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF892) Ferritin PF00210.19 gi|433589580|ref|YP_007279076.1| - 0.00059 19.6 11.9 0.0011 18.7 8.2 1.5 1 1 0 1 1 1 1 Ferritin-like domain FlgN PF05130.7 gi|433589580|ref|YP_007279076.1| - 0.0032 17.7 4.1 0.63 10.2 0.1 2.3 2 0 0 2 2 2 2 FlgN protein Vir_act_alpha_C PF10400.4 gi|433589580|ref|YP_007279076.1| - 0.032 14.6 4.8 1.1 9.6 0.2 2.7 3 0 0 3 3 3 0 Virulence activator alpha C-term DUF2277 PF10041.4 gi|433589580|ref|YP_007279076.1| - 0.048 13.6 0.3 0.1 12.5 0.0 1.7 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2277) DUF2383 PF09537.5 gi|433589580|ref|YP_007279076.1| - 0.078 13.2 7.6 0.095 12.9 0.2 2.4 2 1 0 2 2 2 0 Domain of unknown function (DUF2383) RhoGEF PF00621.15 gi|433589580|ref|YP_007279076.1| - 0.081 12.7 1.2 0.11 12.3 0.1 1.8 2 1 0 2 2 2 0 RhoGEF domain PilJ PF13675.1 gi|433589580|ref|YP_007279076.1| - 0.083 13.2 2.1 1.2 9.4 0.1 2.2 2 0 0 2 2 2 0 Type IV pili methyl-accepting chemotaxis transducer N-term Sigma70_ner PF04546.8 gi|433589580|ref|YP_007279076.1| - 0.89 9.1 9.7 1.2 8.7 6.7 1.2 1 0 0 1 1 1 0 Sigma-70, non-essential region MerR-DNA-bind PF09278.6 gi|433589580|ref|YP_007279076.1| - 7.5 7.0 8.1 1.4 9.3 0.8 2.3 2 0 0 2 2 2 0 MerR, DNA binding Acetyltransf_1 PF00583.19 gi|433589581|ref|YP_007279077.1| - 1e-16 60.6 0.3 1.4e-16 60.2 0.2 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|433589581|ref|YP_007279077.1| - 2e-13 50.4 0.0 2.5e-13 50.1 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|433589581|ref|YP_007279077.1| - 2.2e-10 40.5 0.0 3.4e-10 39.9 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|433589581|ref|YP_007279077.1| - 1.9e-09 37.4 0.0 3.9e-09 36.4 0.0 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|433589581|ref|YP_007279077.1| - 3.2e-06 26.7 0.0 7.3e-06 25.6 0.0 1.6 2 0 0 2 2 2 1 FR47-like protein Acetyltransf_8 PF13523.1 gi|433589581|ref|YP_007279077.1| - 8.6e-05 22.4 0.0 0.00015 21.7 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|433589581|ref|YP_007279077.1| - 0.0001 22.3 0.0 0.00014 21.8 0.0 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|433589581|ref|YP_007279077.1| - 0.023 14.8 0.0 0.061 13.4 0.0 1.7 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain SpoVAD PF07451.6 gi|433589583|ref|YP_007279079.1| - 0.026 12.9 0.0 0.028 12.8 0.0 1.1 1 0 0 1 1 1 0 Stage V sporulation protein AD (SpoVAD) NUDIX PF00293.23 gi|433589584|ref|YP_007279080.1| - 1.8e-16 59.9 0.6 2.8e-16 59.3 0.4 1.3 1 1 0 1 1 1 1 NUDIX domain Rhodanese PF00581.15 gi|433589585|ref|YP_007279081.1| - 1.1e-13 51.5 0.0 1.3e-13 51.3 0.0 1.1 1 0 0 1 1 1 1 Rhodanese-like domain SUI1 PF01253.17 gi|433589586|ref|YP_007279082.1| - 5.3e-24 83.8 0.0 6.1e-24 83.6 0.0 1.1 1 0 0 1 1 1 1 Translation initiation factor SUI1 DTW PF03942.10 gi|433589586|ref|YP_007279082.1| - 0.055 12.6 0.5 0.068 12.3 0.4 1.1 1 0 0 1 1 1 0 DTW domain Img2 PF05046.9 gi|433589586|ref|YP_007279082.1| - 0.064 13.4 0.0 0.084 13.1 0.0 1.4 1 1 0 1 1 1 0 Mitochondrial large subunit ribosomal protein (Img2) Transglut_core PF01841.14 gi|433589587|ref|YP_007279083.1| - 1.3e-29 102.7 0.0 2.9e-29 101.5 0.0 1.7 1 0 0 1 1 1 1 Transglutaminase-like superfamily DUF4129 PF13559.1 gi|433589587|ref|YP_007279083.1| - 1.5e-06 28.1 15.2 1.5e-06 28.0 8.6 2.7 2 0 0 2 2 2 1 Domain of unknown function (DUF4129) Transglut_core3 PF13471.1 gi|433589587|ref|YP_007279083.1| - 0.00038 20.2 0.1 0.002 17.8 0.0 2.3 2 0 0 2 2 2 1 Transglutaminase-like superfamily DUF3488 PF11992.3 gi|433589587|ref|YP_007279083.1| - 0.0028 16.3 0.1 0.0028 16.3 0.1 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF3488) Tox-PL-2 PF15643.1 gi|433589587|ref|YP_007279083.1| - 0.055 13.4 0.0 0.098 12.6 0.0 1.3 1 0 0 1 1 1 0 Papain fold toxin 2 DUF4131 PF13567.1 gi|433589587|ref|YP_007279083.1| - 0.47 9.8 17.6 1.1 8.6 0.6 4.3 2 2 1 3 3 3 0 Domain of unknown function (DUF4131) DUF58 PF01882.13 gi|433589588|ref|YP_007279084.1| - 2.9e-16 59.3 0.5 3.1e-15 56.0 0.1 2.3 2 0 0 2 2 2 1 Protein of unknown function DUF58 AAA_3 PF07726.6 gi|433589589|ref|YP_007279085.1| - 1.6e-60 202.4 0.1 3.4e-60 201.3 0.1 1.5 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|433589589|ref|YP_007279085.1| - 1.4e-14 54.0 0.0 3.3e-14 52.7 0.0 1.7 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) MCM PF00493.18 gi|433589589|ref|YP_007279085.1| - 8.7e-08 31.3 0.0 7e-05 21.7 0.0 2.2 2 0 0 2 2 2 2 MCM2/3/5 family Sigma54_activat PF00158.21 gi|433589589|ref|YP_007279085.1| - 9e-07 28.5 0.0 0.00061 19.2 0.0 2.2 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA PF00004.24 gi|433589589|ref|YP_007279085.1| - 6.9e-06 26.2 0.0 2.5e-05 24.5 0.0 2.0 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.16 gi|433589589|ref|YP_007279085.1| - 6.7e-05 22.1 0.1 0.0017 17.5 0.0 2.2 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI RuvB_N PF05496.7 gi|433589589|ref|YP_007279085.1| - 0.0003 19.9 0.0 0.0018 17.3 0.0 2.2 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_22 PF13401.1 gi|433589589|ref|YP_007279085.1| - 0.058 13.5 0.0 0.18 11.9 0.0 1.9 2 0 0 2 2 2 0 AAA domain CSD PF00313.17 gi|433589590|ref|YP_007279086.1| - 1.1e-20 73.1 0.1 1.2e-20 73.0 0.1 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain OB_RNB PF08206.6 gi|433589590|ref|YP_007279086.1| - 0.017 14.5 2.7 0.023 14.1 1.8 1.3 1 0 0 1 1 1 0 Ribonuclease B OB domain S1-like PF14444.1 gi|433589590|ref|YP_007279086.1| - 0.099 12.3 0.9 0.14 11.9 0.6 1.4 1 1 0 1 1 1 0 S1-like A2L_zn_ribbon PF08792.5 gi|433589591|ref|YP_007279087.1| - 0.0014 18.0 1.5 0.014 14.8 1.0 2.0 1 1 0 1 1 1 1 A2L zinc ribbon domain DUF4182 PF13790.1 gi|433589591|ref|YP_007279087.1| - 0.018 14.8 0.8 0.45 10.3 0.1 2.8 3 0 0 3 3 3 0 Domain of unknown function (DUF4182) zf-ribbon_3 PF13248.1 gi|433589591|ref|YP_007279087.1| - 0.029 13.5 0.7 0.059 12.6 0.5 1.5 1 0 0 1 1 1 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|433589591|ref|YP_007279087.1| - 0.084 12.8 2.0 0.23 11.4 1.4 1.7 1 1 0 1 1 1 0 Zinc ribbon domain zf-RING_3 PF14369.1 gi|433589591|ref|YP_007279087.1| - 0.1 12.5 3.9 0.35 10.9 2.7 1.8 1 1 1 2 2 2 0 zinc-finger HypA PF01155.14 gi|433589591|ref|YP_007279087.1| - 0.12 12.0 0.1 0.13 11.9 0.1 1.2 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family TF_Zn_Ribbon PF08271.7 gi|433589591|ref|YP_007279087.1| - 0.19 11.0 3.9 1.5 8.2 2.8 2.1 1 1 1 2 2 2 0 TFIIB zinc-binding Zn_Tnp_IS1595 PF12760.2 gi|433589591|ref|YP_007279087.1| - 0.39 10.5 6.6 4.1 7.2 0.2 2.4 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Bac_luciferase PF00296.15 gi|433589593|ref|YP_007279089.1| - 2.5e-63 214.0 8.2 2.7e-63 213.9 4.7 1.5 1 1 1 2 2 2 1 Luciferase-like monooxygenase F420_ligase PF01996.11 gi|433589594|ref|YP_007279090.1| - 1.7e-68 230.1 0.0 1.9e-68 229.9 0.0 1.0 1 0 0 1 1 1 1 F420-0:Gamma-glutamyl ligase Asp_Glu_race PF01177.17 gi|433589595|ref|YP_007279091.1| - 4e-31 108.5 1.6 4.7e-31 108.3 1.1 1.0 1 0 0 1 1 1 1 Asp/Glu/Hydantoin racemase B12-binding PF02310.14 gi|433589595|ref|YP_007279091.1| - 0.0028 17.5 2.0 0.24 11.2 0.0 2.9 1 1 2 3 3 3 1 B12 binding domain Peripla_BP_6 PF13458.1 gi|433589595|ref|YP_007279091.1| - 0.02 14.2 2.4 0.086 12.1 0.1 2.5 1 1 1 3 3 3 0 Periplasmic binding protein AroM PF07302.6 gi|433589595|ref|YP_007279091.1| - 0.021 14.1 0.0 2.7 7.2 0.0 2.7 2 1 0 2 2 2 0 AroM protein Nitro_FeMo-Co PF02579.12 gi|433589595|ref|YP_007279091.1| - 0.035 14.1 2.7 2.2 8.4 0.1 3.2 1 1 2 3 3 3 0 Dinitrogenase iron-molybdenum cofactor Phosphonate-bd PF12974.2 gi|433589595|ref|YP_007279091.1| - 0.1 11.9 1.1 0.17 11.2 0.8 1.4 1 1 0 1 1 1 0 ABC transporter, phosphonate, periplasmic substrate-binding protein Octopine_DH PF02317.12 gi|433589595|ref|YP_007279091.1| - 0.15 11.7 0.0 0.24 11.0 0.0 1.4 1 0 0 1 1 1 0 NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain Hydantoinase_B PF02538.9 gi|433589596|ref|YP_007279092.1| - 2.6e-152 507.7 0.0 3.7e-152 507.2 0.0 1.1 1 0 0 1 1 1 1 Hydantoinase B/oxoprolinase Hydantoinase_A PF01968.13 gi|433589597|ref|YP_007279093.1| - 4.5e-90 301.6 14.5 1e-88 297.2 4.9 2.4 2 0 0 2 2 2 2 Hydantoinase/oxoprolinase Hydant_A_N PF05378.8 gi|433589597|ref|YP_007279093.1| - 3e-49 166.9 1.9 1.3e-48 164.8 0.0 2.3 2 0 0 2 2 2 1 Hydantoinase/oxoprolinase N-terminal region MutL PF13941.1 gi|433589597|ref|YP_007279093.1| - 0.028 12.7 7.9 0.13 10.5 0.3 3.0 3 0 0 3 3 3 0 MutL protein Nramp PF01566.13 gi|433589598|ref|YP_007279094.1| - 4.5e-98 328.3 23.2 5.5e-98 328.0 16.1 1.1 1 0 0 1 1 1 1 Natural resistance-associated macrophage protein EIID-AGA PF03613.9 gi|433589598|ref|YP_007279094.1| - 0.00067 18.6 0.1 0.00067 18.6 0.1 3.2 4 0 0 4 4 4 1 PTS system mannose/fructose/sorbose family IID component RHH_1 PF01402.16 gi|433589599|ref|YP_007279095.1| - 1.7e-08 33.9 0.0 3.6e-08 32.9 0.0 1.6 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_3 PF12651.2 gi|433589599|ref|YP_007279095.1| - 0.0073 16.0 0.0 0.014 15.0 0.0 1.5 1 0 0 1 1 1 1 Ribbon-helix-helix domain Metallophos_2 PF12850.2 gi|433589600|ref|YP_007279096.1| - 1.4e-17 64.0 0.5 1.7e-17 63.6 0.3 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain DUF556 PF04476.8 gi|433589600|ref|YP_007279096.1| - 0.014 14.5 0.0 0.019 14.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF556) Metallophos PF00149.23 gi|433589600|ref|YP_007279096.1| - 0.085 12.2 0.1 0.3 10.4 0.0 1.7 1 1 0 1 1 1 0 Calcineurin-like phosphoesterase IF-2B PF01008.12 gi|433589601|ref|YP_007279097.1| - 1.7e-43 148.6 0.2 2.6e-43 148.0 0.1 1.2 1 0 0 1 1 1 1 Initiation factor 2 subunit family NUDIX PF00293.23 gi|433589601|ref|YP_007279097.1| - 6e-05 22.7 1.1 0.00013 21.6 0.7 1.5 1 0 0 1 1 1 1 NUDIX domain Nuc_N PF14448.1 gi|433589601|ref|YP_007279097.1| - 0.072 12.6 0.3 0.26 10.8 0.2 2.1 1 1 0 1 1 1 0 Nuclease N terminal HTH_11 PF08279.7 gi|433589602|ref|YP_007279098.1| - 1.9e-05 24.2 0.0 2.5e-05 23.8 0.0 1.2 1 0 0 1 1 1 1 HTH domain HTH_24 PF13412.1 gi|433589602|ref|YP_007279098.1| - 3.5e-05 23.0 0.0 4.4e-05 22.7 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|433589602|ref|YP_007279098.1| - 0.00028 20.3 0.1 0.00051 19.5 0.1 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain MarR_2 PF12802.2 gi|433589602|ref|YP_007279098.1| - 0.0016 18.0 0.4 0.0021 17.6 0.3 1.3 1 1 0 1 1 1 1 MarR family HTH_DeoR PF08220.7 gi|433589602|ref|YP_007279098.1| - 0.0018 17.7 0.2 0.0042 16.5 0.2 1.5 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain HTH_20 PF12840.2 gi|433589602|ref|YP_007279098.1| - 0.0051 16.5 0.1 0.007 16.1 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|433589602|ref|YP_007279098.1| - 0.0078 15.9 0.0 0.012 15.2 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|433589602|ref|YP_007279098.1| - 0.011 15.3 0.0 0.016 14.8 0.0 1.3 1 0 0 1 1 1 0 MarR family HTH_7 PF02796.10 gi|433589602|ref|YP_007279098.1| - 0.011 15.5 0.1 0.024 14.4 0.0 1.7 1 1 0 1 1 1 0 Helix-turn-helix domain of resolvase GntR PF00392.16 gi|433589602|ref|YP_007279098.1| - 0.015 14.7 0.5 0.021 14.2 0.3 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_Crp_2 PF13545.1 gi|433589602|ref|YP_007279098.1| - 0.02 14.6 0.1 0.03 14.0 0.0 1.3 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_IclR PF09339.5 gi|433589602|ref|YP_007279098.1| - 0.031 13.8 0.1 0.042 13.4 0.1 1.2 1 0 0 1 1 1 0 IclR helix-turn-helix domain Rrf2 PF02082.15 gi|433589602|ref|YP_007279098.1| - 0.051 13.6 0.0 0.9 9.7 0.0 2.0 2 0 0 2 2 2 0 Transcriptional regulator RepL PF05732.6 gi|433589602|ref|YP_007279098.1| - 0.079 12.1 0.0 0.092 11.9 0.0 1.1 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) HTH_Mga PF08280.6 gi|433589602|ref|YP_007279098.1| - 0.14 11.8 0.1 0.22 11.3 0.0 1.2 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain OrfB_IS605 PF01385.14 gi|433589603|ref|YP_007279099.1| - 9.1e-51 172.4 0.0 1.3e-50 171.9 0.0 1.2 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|433589603|ref|YP_007279099.1| - 6.6e-16 57.7 0.8 1.4e-15 56.6 0.2 1.9 2 0 0 2 2 2 1 Putative transposase DNA-binding domain Zn_Tnp_IS1595 PF12760.2 gi|433589603|ref|YP_007279099.1| - 0.032 14.0 4.7 0.075 12.8 3.3 1.6 1 0 0 1 1 1 0 Transposase zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|433589603|ref|YP_007279099.1| - 0.1 12.5 4.9 4 7.4 0.5 2.6 2 0 0 2 2 2 0 Zinc ribbon domain 2-Hacid_dh_C PF02826.14 gi|433589604|ref|YP_007279100.1| - 1.5e-49 167.5 0.0 1.9e-49 167.2 0.0 1.1 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|433589604|ref|YP_007279100.1| - 7.2e-08 31.9 0.0 8.8e-08 31.7 0.0 1.1 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AdoHcyase_NAD PF00670.16 gi|433589604|ref|YP_007279100.1| - 2.3e-05 24.3 0.3 0.15 11.8 0.0 2.3 2 0 0 2 2 2 2 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Oxidored_nitro PF00148.14 gi|433589604|ref|YP_007279100.1| - 0.024 13.2 0.0 0.041 12.5 0.0 1.3 1 0 0 1 1 1 0 Nitrogenase component 1 type Oxidoreductase NAD_binding_2 PF03446.10 gi|433589604|ref|YP_007279100.1| - 0.044 13.6 0.0 0.072 12.9 0.0 1.2 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase Nup35_RRM_2 PF14605.1 gi|433589604|ref|YP_007279100.1| - 0.054 13.2 0.0 0.11 12.2 0.0 1.5 1 0 0 1 1 1 0 Nup53/35/40-type RNA recognition motif MMR_HSR1 PF01926.18 gi|433589605|ref|YP_007279101.1| - 8.9e-18 64.3 0.0 1.2e-17 63.9 0.0 1.2 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|433589605|ref|YP_007279101.1| - 2.6e-13 49.5 0.1 5.1e-12 45.3 0.1 2.0 1 1 0 1 1 1 1 Ferrous iron transport protein B GTP_EFTU PF00009.22 gi|433589605|ref|YP_007279101.1| - 3.3e-07 29.9 0.0 8.7e-05 22.0 0.0 2.2 2 0 0 2 2 2 2 Elongation factor Tu GTP binding domain AAA_18 PF13238.1 gi|433589605|ref|YP_007279101.1| - 0.0002 21.6 0.0 0.0003 21.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain Dynamin_N PF00350.18 gi|433589605|ref|YP_007279101.1| - 0.0007 19.4 0.1 0.021 14.6 0.0 2.2 1 1 1 2 2 2 1 Dynamin family MobB PF03205.9 gi|433589605|ref|YP_007279101.1| - 0.0021 17.7 0.0 0.011 15.4 0.0 1.9 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_17 PF13207.1 gi|433589605|ref|YP_007279101.1| - 0.0022 18.7 0.1 0.0055 17.5 0.1 1.7 1 1 0 1 1 1 1 AAA domain ABC_tran PF00005.22 gi|433589605|ref|YP_007279101.1| - 0.003 17.8 0.0 0.0034 17.6 0.0 1.4 1 1 0 1 1 1 1 ABC transporter ATP_bind_1 PF03029.12 gi|433589605|ref|YP_007279101.1| - 0.0048 16.4 1.9 0.15 11.5 0.1 2.6 2 1 0 2 2 2 1 Conserved hypothetical ATP binding protein RBD-FIP PF09457.5 gi|433589605|ref|YP_007279101.1| - 0.0073 16.0 0.7 0.016 14.9 0.5 1.5 1 0 0 1 1 1 1 FIP domain AIG1 PF04548.11 gi|433589605|ref|YP_007279101.1| - 0.0094 15.0 0.0 0.013 14.5 0.0 1.2 1 0 0 1 1 1 1 AIG1 family DUF258 PF03193.11 gi|433589605|ref|YP_007279101.1| - 0.011 14.8 0.1 0.026 13.6 0.1 1.7 1 1 0 1 1 1 0 Protein of unknown function, DUF258 Miro PF08477.8 gi|433589605|ref|YP_007279101.1| - 0.013 16.0 0.1 0.049 14.1 0.0 2.0 1 1 0 1 1 1 0 Miro-like protein AAA_10 PF12846.2 gi|433589605|ref|YP_007279101.1| - 0.032 13.6 0.0 0.041 13.3 0.0 1.3 1 0 0 1 1 1 0 AAA-like domain AAA_29 PF13555.1 gi|433589605|ref|YP_007279101.1| - 0.032 13.7 0.0 0.062 12.8 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_25 PF13481.1 gi|433589605|ref|YP_007279101.1| - 0.051 12.9 0.3 1.3 8.3 0.0 2.3 1 1 1 2 2 2 0 AAA domain Ras PF00071.17 gi|433589605|ref|YP_007279101.1| - 0.063 12.6 0.1 0.14 11.5 0.0 1.6 2 0 0 2 2 2 0 Ras family ArgK PF03308.11 gi|433589605|ref|YP_007279101.1| - 0.1 11.3 0.2 6.8 5.3 0.0 2.2 2 0 0 2 2 2 0 ArgK protein DUF3113 PF11310.3 gi|433589605|ref|YP_007279101.1| - 0.56 9.9 4.5 0.21 11.3 0.4 2.3 2 1 1 3 3 3 0 Protein of unknown function (DUF3113) LysE PF01810.13 gi|433589606|ref|YP_007279102.1| - 0.00076 18.8 0.4 0.00076 18.8 0.3 2.2 2 0 0 2 2 2 1 LysE type translocator CbbQ_C PF08406.5 gi|433589606|ref|YP_007279102.1| - 0.065 13.2 1.3 0.15 12.1 0.0 2.0 2 1 0 2 2 2 0 CbbQ/NirQ/NorQ C-terminal Peptidase_A24 PF01478.13 gi|433589606|ref|YP_007279102.1| - 2 8.5 14.5 5.8 7.1 10.0 1.8 1 1 0 1 1 1 0 Type IV leader peptidase family DUF389 PF04087.9 gi|433589607|ref|YP_007279103.1| - 2.8e-34 118.0 22.3 2.8e-34 118.0 15.5 1.9 3 0 0 3 3 3 1 Domain of unknown function (DUF389) DUF4131 PF13567.1 gi|433589607|ref|YP_007279103.1| - 0.00053 19.4 1.1 0.0042 16.4 0.0 2.4 2 1 0 2 2 2 1 Domain of unknown function (DUF4131) Peptidase_M64 PF09471.5 gi|433589607|ref|YP_007279103.1| - 0.053 13.1 0.2 0.54 9.8 0.1 2.1 2 0 0 2 2 2 0 IgA Peptidase M64 NosL PF05573.7 gi|433589608|ref|YP_007279104.1| - 0.088 12.5 0.7 0.096 12.3 0.5 1.1 1 0 0 1 1 1 0 NosL zf-RING_2 PF13639.1 gi|433589608|ref|YP_007279104.1| - 0.16 11.8 10.1 0.19 11.5 7.0 1.2 1 0 0 1 1 1 0 Ring finger domain Phage_tail_L PF05100.7 gi|433589608|ref|YP_007279104.1| - 0.24 10.5 3.2 0.26 10.3 2.2 1.1 1 0 0 1 1 1 0 Phage minor tail protein L Fer4_9 PF13187.1 gi|433589608|ref|YP_007279104.1| - 0.31 11.3 7.2 1.3 9.3 2.0 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain DNA_RNApol_7kD PF03604.8 gi|433589608|ref|YP_007279104.1| - 1 8.9 0.0 1 8.9 0.0 2.5 2 1 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit NOG1 PF06858.9 gi|433589609|ref|YP_007279105.1| - 1.9e-17 62.9 0.0 3.9e-17 61.8 0.0 1.6 1 0 0 1 1 1 1 Nucleolar GTP-binding protein 1 (NOG1) MMR_HSR1 PF01926.18 gi|433589609|ref|YP_007279105.1| - 2.7e-17 62.7 0.0 5.4e-17 61.8 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|433589609|ref|YP_007279105.1| - 7.5e-09 35.0 0.0 1.3e-08 34.2 0.0 1.4 1 0 0 1 1 1 1 Ferrous iron transport protein B Miro PF08477.8 gi|433589609|ref|YP_007279105.1| - 0.00037 20.9 0.0 0.00069 20.1 0.0 1.5 1 0 0 1 1 1 1 Miro-like protein Dynamin_N PF00350.18 gi|433589609|ref|YP_007279105.1| - 0.0028 17.4 1.6 1.8 8.3 0.0 3.1 2 1 1 3 3 3 1 Dynamin family AIG1 PF04548.11 gi|433589609|ref|YP_007279105.1| - 0.012 14.6 0.0 0.026 13.6 0.0 1.5 2 0 0 2 2 2 0 AIG1 family Myosin_tail_1 PF01576.14 gi|433589609|ref|YP_007279105.1| - 0.028 12.1 0.2 0.035 11.8 0.1 1.1 1 0 0 1 1 1 0 Myosin tail APP_E2 PF12925.2 gi|433589609|ref|YP_007279105.1| - 0.03 13.8 2.3 0.066 12.7 1.2 1.8 1 1 1 2 2 2 0 E2 domain of amyloid precursor protein OKR_DC_1_N PF03709.10 gi|433589609|ref|YP_007279105.1| - 0.055 13.5 0.0 0.12 12.3 0.0 1.5 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, N-terminal domain DUF258 PF03193.11 gi|433589609|ref|YP_007279105.1| - 0.075 12.2 0.0 0.26 10.4 0.0 1.9 1 1 0 1 1 1 0 Protein of unknown function, DUF258 Ldr_toxin PF13940.1 gi|433589610|ref|YP_007279106.1| - 0.034 13.9 0.9 0.034 13.9 0.7 3.5 2 1 1 3 3 3 0 Toxin Ldr, type I toxin-antitoxin system DUF326 PF03860.11 gi|433589611|ref|YP_007279107.1| - 2.2e-07 30.3 45.3 0.0029 17.3 4.3 5.0 3 2 1 4 4 4 4 Domain of Unknown Function (DUF326) PRA-PH PF01503.12 gi|433589612|ref|YP_007279108.1| - 1.1e-13 51.2 4.1 1.2e-13 51.0 2.8 1.1 1 0 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase MazG PF03819.12 gi|433589612|ref|YP_007279108.1| - 0.0023 17.8 5.0 0.0023 17.8 3.5 1.6 2 0 0 2 2 2 1 MazG nucleotide pyrophosphohydrolase domain DNase-RNase PF02577.9 gi|433589613|ref|YP_007279109.1| - 6.6e-34 116.0 0.0 8.3e-34 115.7 0.0 1.1 1 0 0 1 1 1 1 Bifunctional nuclease SNO PF01174.14 gi|433589614|ref|YP_007279110.1| - 7.4e-48 162.6 0.0 8.7e-48 162.4 0.0 1.0 1 0 0 1 1 1 1 SNO glutamine amidotransferase family GATase_3 PF07685.9 gi|433589614|ref|YP_007279110.1| - 3.5e-09 36.4 0.0 1.3e-08 34.5 0.0 1.9 2 1 0 2 2 2 1 CobB/CobQ-like glutamine amidotransferase domain Peptidase_S51 PF03575.12 gi|433589614|ref|YP_007279110.1| - 0.00012 21.8 0.0 0.00016 21.4 0.0 1.2 1 0 0 1 1 1 1 Peptidase family S51 GATase PF00117.23 gi|433589614|ref|YP_007279110.1| - 0.0038 16.7 0.0 0.027 13.9 0.0 1.9 1 1 0 1 1 1 1 Glutamine amidotransferase class-I BPL_N PF09825.4 gi|433589614|ref|YP_007279110.1| - 0.0052 15.6 0.0 0.021 13.6 0.0 1.8 2 0 0 2 2 2 1 Biotin-protein ligase, N terminal DJ-1_PfpI PF01965.19 gi|433589614|ref|YP_007279110.1| - 0.022 14.2 0.0 0.032 13.7 0.0 1.3 1 0 0 1 1 1 0 DJ-1/PfpI family DUF4177 PF13783.1 gi|433589615|ref|YP_007279111.1| - 2.3e-14 52.7 0.1 2.8e-14 52.4 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4177) DUF2761 PF10959.3 gi|433589615|ref|YP_007279111.1| - 0.1 12.1 0.0 0.12 12.0 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2761) RskA PF10099.4 gi|433589616|ref|YP_007279112.1| - 0.17 11.6 0.0 0.17 11.6 0.0 2.1 2 1 0 2 2 2 0 Anti-sigma-K factor rskA Sec61_beta PF03911.11 gi|433589617|ref|YP_007279113.1| - 2.2e-08 33.7 0.1 2.7e-08 33.4 0.1 1.2 1 0 0 1 1 1 1 Sec61beta family GNVR PF13807.1 gi|433589617|ref|YP_007279113.1| - 0.12 12.0 0.1 0.14 11.8 0.0 1.1 1 0 0 1 1 1 0 G-rich domain on putative tyrosine kinase Thioredoxin PF00085.15 gi|433589618|ref|YP_007279114.1| - 1.3e-21 76.1 0.0 1.6e-21 75.9 0.0 1.0 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|433589618|ref|YP_007279114.1| - 9.6e-08 32.2 0.0 5e-07 29.9 0.0 1.8 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_8 PF13905.1 gi|433589618|ref|YP_007279114.1| - 1.3e-07 31.6 0.0 8.2e-05 22.6 0.0 2.1 1 1 1 2 2 2 2 Thioredoxin-like Thioredoxin_3 PF13192.1 gi|433589618|ref|YP_007279114.1| - 3.6e-05 23.5 0.0 4.2e-05 23.2 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin domain Thioredoxin_9 PF14595.1 gi|433589618|ref|YP_007279114.1| - 0.00021 20.8 0.0 0.00025 20.5 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Redoxin PF08534.5 gi|433589618|ref|YP_007279114.1| - 0.00039 19.9 0.3 0.034 13.7 0.1 1.9 1 1 1 2 2 2 2 Redoxin AhpC-TSA PF00578.16 gi|433589618|ref|YP_007279114.1| - 0.00091 18.9 0.3 1.1 8.9 0.0 2.0 1 1 1 2 2 2 2 AhpC/TSA family DUF836 PF05768.9 gi|433589618|ref|YP_007279114.1| - 0.0013 18.9 0.1 0.0015 18.7 0.0 1.2 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) Thioredoxin_5 PF13743.1 gi|433589618|ref|YP_007279114.1| - 0.0088 15.6 0.1 0.0098 15.4 0.1 1.1 1 0 0 1 1 1 1 Thioredoxin TraF PF13728.1 gi|433589618|ref|YP_007279114.1| - 0.012 15.1 0.0 0.014 14.9 0.0 1.2 1 0 0 1 1 1 0 F plasmid transfer operon protein HyaE PF07449.6 gi|433589618|ref|YP_007279114.1| - 0.013 15.3 0.0 0.016 15.1 0.0 1.1 1 0 0 1 1 1 0 Hydrogenase-1 expression protein HyaE Thioredoxin_7 PF13899.1 gi|433589618|ref|YP_007279114.1| - 0.014 15.4 0.0 0.026 14.5 0.0 1.5 1 0 0 1 1 1 0 Thioredoxin-like DSBA PF01323.15 gi|433589618|ref|YP_007279114.1| - 0.018 14.6 0.2 0.12 11.8 0.0 1.9 1 1 1 2 2 2 0 DSBA-like thioredoxin domain KaiB PF07689.7 gi|433589618|ref|YP_007279114.1| - 0.023 14.1 0.0 0.026 13.9 0.0 1.1 1 0 0 1 1 1 0 KaiB domain Glutaredoxin PF00462.19 gi|433589618|ref|YP_007279114.1| - 0.058 13.3 0.2 0.098 12.6 0.1 1.5 1 1 0 1 1 1 0 Glutaredoxin DUF4371 PF14291.1 gi|433589618|ref|YP_007279114.1| - 0.14 11.7 0.0 0.15 11.5 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4371) DDE_5 PF13546.1 gi|433589619|ref|YP_007279115.1| - 1.8e-18 66.3 0.0 4.2e-18 65.1 0.0 1.4 1 1 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_1 PF01609.16 gi|433589619|ref|YP_007279115.1| - 3.3e-12 46.3 0.4 6.3e-12 45.4 0.1 1.6 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_2 PF04693.7 gi|433589619|ref|YP_007279115.1| - 0.00013 21.0 0.0 0.00057 18.9 0.0 1.9 1 1 0 1 1 1 1 Archaeal putative transposase ISC1217 F420_oxidored PF03807.12 gi|433589620|ref|YP_007279116.1| - 4.5e-20 71.8 0.0 8.8e-20 70.9 0.0 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Semialdhyde_dh PF01118.19 gi|433589620|ref|YP_007279116.1| - 2.8e-05 24.4 0.0 0.00033 20.9 0.0 2.0 2 0 0 2 2 2 1 Semialdehyde dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.18 gi|433589620|ref|YP_007279116.1| - 4.3e-05 23.2 0.0 6.7e-05 22.6 0.0 1.4 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_10 PF13460.1 gi|433589620|ref|YP_007279116.1| - 0.00028 20.9 0.1 0.00045 20.2 0.1 1.4 1 0 0 1 1 1 1 NADH(P)-binding adh_short PF00106.20 gi|433589620|ref|YP_007279116.1| - 0.0013 18.7 0.3 0.0013 18.7 0.2 2.1 2 1 0 2 2 2 1 short chain dehydrogenase PDH PF02153.12 gi|433589620|ref|YP_007279116.1| - 0.0031 16.4 0.0 0.0048 15.8 0.0 1.3 1 0 0 1 1 1 1 Prephenate dehydrogenase ApbA PF02558.11 gi|433589620|ref|YP_007279116.1| - 0.0059 16.0 0.0 0.0083 15.5 0.0 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA DUF1995 PF09353.5 gi|433589620|ref|YP_007279116.1| - 0.0081 15.7 0.0 0.025 14.1 0.0 1.7 2 0 0 2 2 2 1 Domain of unknown function (DUF1995) KR PF08659.5 gi|433589620|ref|YP_007279116.1| - 0.013 15.1 0.7 0.036 13.7 0.1 1.8 2 0 0 2 2 2 0 KR domain GFO_IDH_MocA PF01408.17 gi|433589620|ref|YP_007279116.1| - 0.017 15.6 0.0 0.046 14.2 0.0 1.7 2 0 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold Bac_luciferase PF00296.15 gi|433589620|ref|YP_007279116.1| - 0.032 13.3 0.6 0.052 12.6 0.4 1.3 1 0 0 1 1 1 0 Luciferase-like monooxygenase DXP_reductoisom PF02670.11 gi|433589620|ref|YP_007279116.1| - 0.18 12.3 0.6 15 6.1 0.0 2.4 2 1 0 2 2 2 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase DUF4502 PF14950.1 gi|433589621|ref|YP_007279117.1| - 0.12 11.4 0.1 0.15 11.2 0.1 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4502) FUSC PF04632.7 gi|433589621|ref|YP_007279117.1| - 1.4 7.2 5.3 1.5 7.1 3.7 1.0 1 0 0 1 1 1 0 Fusaric acid resistance protein family Metal_resist PF13801.1 gi|433589621|ref|YP_007279117.1| - 5.1 7.0 10.4 6.2 6.8 7.2 1.1 1 0 0 1 1 1 0 Heavy-metal resistance GDPD PF03009.12 gi|433589622|ref|YP_007279118.1| - 1.5e-26 93.4 0.0 3.6e-26 92.2 0.0 1.6 1 1 0 1 1 1 1 Glycerophosphoryl diester phosphodiesterase family GDPD_2 PF13653.1 gi|433589622|ref|YP_007279118.1| - 0.001 19.2 0.8 0.0019 18.2 0.5 1.5 1 0 0 1 1 1 1 Glycerophosphoryl diester phosphodiesterase family STAG PF08514.6 gi|433589623|ref|YP_007279119.1| - 0.062 13.0 0.3 0.085 12.5 0.2 1.4 1 1 0 1 1 1 0 STAG domain COX1 PF00115.15 gi|433589624|ref|YP_007279120.1| - 2.1e-134 448.5 71.2 2.1e-134 448.5 49.4 2.8 3 1 1 4 4 4 1 Cytochrome C and Quinol oxidase polypeptide I COX3 PF00510.13 gi|433589624|ref|YP_007279120.1| - 2.2e-20 73.2 16.4 2.2e-20 73.2 11.4 3.0 3 1 0 3 3 3 1 Cytochrome c oxidase subunit III DUF2583 PF10762.4 gi|433589624|ref|YP_007279120.1| - 2.5 8.2 11.2 0.24 11.5 1.6 3.8 3 0 0 3 3 3 0 Protein of unknown function (DUF2583) PemK PF02452.12 gi|433589625|ref|YP_007279121.1| - 0.00057 20.0 0.0 0.00061 19.9 0.0 1.1 1 0 0 1 1 1 1 PemK-like protein HTH_Crp_2 PF13545.1 gi|433589626|ref|YP_007279122.1| - 0.0098 15.6 0.0 0.016 15.0 0.0 1.4 1 1 0 1 1 1 1 Crp-like helix-turn-helix domain Phage_rep_org_N PF09681.5 gi|433589626|ref|YP_007279122.1| - 0.033 13.7 0.0 0.041 13.4 0.0 1.1 1 0 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) GntR PF00392.16 gi|433589626|ref|YP_007279122.1| - 0.059 12.8 0.0 0.1 12.0 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_27 PF13463.1 gi|433589626|ref|YP_007279122.1| - 0.11 12.7 0.1 0.17 12.2 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain Fe_dep_repress PF01325.14 gi|433589626|ref|YP_007279122.1| - 0.14 12.0 0.0 0.26 11.2 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain NIF3 PF01784.13 gi|433589627|ref|YP_007279123.1| - 1.9e-52 178.2 0.0 2.2e-52 178.0 0.0 1.0 1 0 0 1 1 1 1 NIF3 (NGG1p interacting factor 3) AP_endonuc_2 PF01261.19 gi|433589627|ref|YP_007279123.1| - 0.035 13.3 0.1 0.16 11.2 0.0 2.0 2 0 0 2 2 2 0 Xylose isomerase-like TIM barrel DUF3815 PF12821.2 gi|433589628|ref|YP_007279124.1| - 0.02 14.8 1.2 0.022 14.6 0.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3815) Sigma_reg_N PF13800.1 gi|433589628|ref|YP_007279124.1| - 0.1 12.6 0.9 1.9 8.5 0.3 2.1 2 0 0 2 2 2 0 Sigma factor regulator N-terminal DUF3953 PF13129.1 gi|433589628|ref|YP_007279124.1| - 0.54 9.9 2.8 0.74 9.4 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3953) Tetraspannin PF00335.15 gi|433589628|ref|YP_007279124.1| - 0.65 9.2 2.4 0.79 8.9 1.7 1.1 1 0 0 1 1 1 0 Tetraspanin family DUF4231 PF14015.1 gi|433589628|ref|YP_007279124.1| - 0.85 9.6 3.5 1 9.3 2.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4231) DS PF01916.12 gi|433589629|ref|YP_007279125.1| - 1.5e-80 270.5 0.0 1.8e-80 270.2 0.0 1.1 1 0 0 1 1 1 1 Deoxyhypusine synthase AA_kinase PF00696.23 gi|433589629|ref|YP_007279125.1| - 0.011 15.2 0.0 0.021 14.3 0.0 1.5 1 0 0 1 1 1 0 Amino acid kinase family Pyridox_oxidase PF01243.15 gi|433589630|ref|YP_007279126.1| - 1.1e-14 54.1 0.0 1.6e-14 53.6 0.0 1.3 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_ox_2 PF12900.2 gi|433589630|ref|YP_007279126.1| - 5e-12 45.8 0.3 5.7e-12 45.6 0.2 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase PaaA_PaaC PF05138.7 gi|433589630|ref|YP_007279126.1| - 0.0059 15.6 0.1 0.0077 15.2 0.1 1.1 1 0 0 1 1 1 1 Phenylacetic acid catabolic protein Peripla_BP_2 PF01497.13 gi|433589630|ref|YP_007279126.1| - 0.068 12.2 0.1 0.08 12.0 0.0 1.2 1 0 0 1 1 1 0 Periplasmic binding protein DUF385 PF04075.9 gi|433589630|ref|YP_007279126.1| - 0.12 12.2 0.2 0.21 11.5 0.1 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF385) PAS_4 PF08448.5 gi|433589631|ref|YP_007279127.1| - 3.8e-22 78.4 7.6 1.8e-13 50.4 0.3 3.4 3 0 0 3 3 2 2 PAS fold PAS_9 PF13426.1 gi|433589631|ref|YP_007279127.1| - 9.7e-21 74.1 0.0 1.9e-10 41.0 0.0 2.5 2 0 0 2 2 2 2 PAS domain HATPase_c PF02518.21 gi|433589631|ref|YP_007279127.1| - 4.3e-18 65.0 0.2 1.5e-17 63.3 0.1 1.9 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.19 gi|433589631|ref|YP_007279127.1| - 6.7e-18 64.5 0.0 2.4e-08 33.7 0.0 2.6 2 0 0 2 2 2 2 PAS fold PAS_8 PF13188.1 gi|433589631|ref|YP_007279127.1| - 3.8e-13 48.7 0.1 2.7e-06 27.0 0.0 3.0 2 0 0 2 2 2 2 PAS domain HisKA PF00512.20 gi|433589631|ref|YP_007279127.1| - 2.1e-11 43.6 3.6 4.4e-11 42.6 1.0 2.7 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain GAF_3 PF13492.1 gi|433589631|ref|YP_007279127.1| - 1.7e-07 31.3 0.4 7.3e-07 29.3 0.0 2.3 3 0 0 3 3 2 1 GAF domain Response_reg PF00072.19 gi|433589631|ref|YP_007279127.1| - 5.4e-07 29.5 0.0 1.3e-06 28.3 0.0 1.6 1 0 0 1 1 1 1 Response regulator receiver domain OKR_DC_1_N PF03709.10 gi|433589631|ref|YP_007279127.1| - 4.9e-05 23.3 0.1 0.00012 22.0 0.1 1.6 1 0 0 1 1 1 1 Orn/Lys/Arg decarboxylase, N-terminal domain GAF PF01590.21 gi|433589631|ref|YP_007279127.1| - 6.5e-05 23.0 0.0 0.00017 21.7 0.0 1.8 1 0 0 1 1 1 1 GAF domain GAF_2 PF13185.1 gi|433589631|ref|YP_007279127.1| - 8.9e-05 23.0 0.0 0.00061 20.3 0.0 2.5 1 0 0 1 1 1 1 GAF domain PAS_3 PF08447.6 gi|433589631|ref|YP_007279127.1| - 0.00021 21.3 0.1 0.032 14.3 0.0 2.6 2 0 0 2 2 2 1 PAS fold PAS_10 PF13596.1 gi|433589631|ref|YP_007279127.1| - 0.00032 20.9 0.0 0.0047 17.1 0.0 2.3 2 0 0 2 2 2 1 PAS domain PAS_7 PF12860.2 gi|433589631|ref|YP_007279127.1| - 0.00052 20.0 0.1 0.022 14.7 0.0 3.1 3 1 0 3 3 3 1 PAS fold HATPase_c_2 PF13581.1 gi|433589631|ref|YP_007279127.1| - 0.0009 19.0 0.1 0.0028 17.4 0.0 1.8 1 1 0 1 1 1 1 Histidine kinase-like ATPase domain MEKHLA PF08670.6 gi|433589631|ref|YP_007279127.1| - 0.011 15.2 0.0 0.98 8.9 0.0 2.5 2 0 0 2 2 2 0 MEKHLA domain HATPase_c_3 PF13589.1 gi|433589631|ref|YP_007279127.1| - 0.063 12.9 0.0 0.13 11.9 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Glycos_transf_2 PF00535.21 gi|433589632|ref|YP_007279128.1| - 2e-26 92.6 0.0 2.6e-26 92.3 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|433589632|ref|YP_007279128.1| - 5.4e-15 55.8 0.2 1.2e-14 54.7 0.1 1.5 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|433589632|ref|YP_007279128.1| - 5.6e-10 38.7 0.0 2.3e-09 36.7 0.0 1.8 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.1 gi|433589632|ref|YP_007279128.1| - 3.9e-08 32.7 0.0 6.2e-08 32.1 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_4 PF13704.1 gi|433589632|ref|YP_007279128.1| - 3e-06 27.4 0.7 1.3e-05 25.4 0.1 2.2 2 1 0 2 2 2 1 Glycosyl transferase family 2 Glyco_trans_2_3 PF13632.1 gi|433589632|ref|YP_007279128.1| - 0.00022 21.0 0.0 0.0004 20.1 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_tranf_2_5 PF13712.1 gi|433589632|ref|YP_007279128.1| - 0.082 12.1 0.0 0.16 11.1 0.0 1.5 1 1 1 2 2 2 0 Glycosyltransferase like family DDE_Tnp_IS240 PF13610.1 gi|433589634|ref|YP_007279130.1| - 2.6e-15 56.6 0.1 3.3e-15 56.2 0.1 1.1 1 0 0 1 1 1 1 DDE domain DDE_Tnp_IS66 PF03050.9 gi|433589634|ref|YP_007279130.1| - 3e-07 29.9 0.1 6.2e-07 28.9 0.1 1.6 1 1 0 1 1 1 1 Transposase IS66 family DDE_3 PF13358.1 gi|433589634|ref|YP_007279130.1| - 0.0038 16.9 0.0 0.017 14.9 0.0 1.9 1 1 0 1 1 1 1 DDE superfamily endonuclease HTH_28 PF13518.1 gi|433589634|ref|YP_007279130.1| - 0.0088 16.0 0.0 0.19 11.7 0.0 2.5 2 0 0 2 2 2 1 Helix-turn-helix domain DDE_Tnp_1 PF01609.16 gi|433589634|ref|YP_007279130.1| - 0.013 15.0 3.5 1.2 8.6 2.4 2.2 1 1 0 1 1 1 0 Transposase DDE domain FSA_C PF10479.4 gi|433589634|ref|YP_007279130.1| - 0.02 13.0 0.0 0.028 12.5 0.0 1.2 1 0 0 1 1 1 0 Fragile site-associated protein C-terminus rve PF00665.21 gi|433589634|ref|YP_007279130.1| - 0.025 14.6 0.1 0.066 13.3 0.0 1.7 2 0 0 2 2 2 0 Integrase core domain DDE_Tnp_1 PF01609.16 gi|433589636|ref|YP_007279132.1| - 1.3e-25 90.1 0.0 1.8e-25 89.7 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_2 PF04693.7 gi|433589636|ref|YP_007279132.1| - 0.0012 17.9 0.1 0.0018 17.3 0.1 1.2 1 0 0 1 1 1 1 Archaeal putative transposase ISC1217 DDE_Tnp_1_2 PF13586.1 gi|433589636|ref|YP_007279132.1| - 0.0082 16.3 0.0 0.023 14.8 0.0 1.7 1 0 0 1 1 1 1 Transposase DDE domain DUF2249 PF10006.4 gi|433589636|ref|YP_007279132.1| - 0.022 14.3 0.2 0.067 12.7 0.1 1.9 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2249) DUF389 PF04087.9 gi|433589638|ref|YP_007279134.1| - 3.2e-25 88.7 20.9 3.2e-25 88.7 14.5 2.7 3 0 0 3 3 3 1 Domain of unknown function (DUF389) Ion_trans PF00520.26 gi|433589639|ref|YP_007279135.1| - 0.39 9.9 5.8 0.56 9.4 4.1 1.4 1 1 0 1 1 1 0 Ion transport protein CBAH PF02275.13 gi|433589640|ref|YP_007279136.1| - 1.5e-48 165.8 0.0 3.5e-47 161.3 0.0 2.0 1 1 0 1 1 1 1 Linear amide C-N hydrolases, choloylglycine hydrolase family AAT PF03417.11 gi|433589640|ref|YP_007279136.1| - 0.09 12.2 0.0 0.13 11.6 0.0 1.3 1 0 0 1 1 1 0 Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase ADH_N PF08240.7 gi|433589641|ref|YP_007279137.1| - 3.7e-28 97.4 0.1 6.5e-28 96.6 0.1 1.4 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|433589641|ref|YP_007279137.1| - 1.6e-19 69.7 0.1 1.3e-14 53.8 0.0 2.3 1 1 1 2 2 2 2 Zinc-binding dehydrogenase ADH_N_assoc PF13823.1 gi|433589641|ref|YP_007279137.1| - 3.7e-10 39.2 0.0 7.8e-10 38.2 0.0 1.6 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-associated Methyltransf_18 PF12847.2 gi|433589641|ref|YP_007279137.1| - 2.1e-05 25.0 0.0 5e-05 23.8 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|433589641|ref|YP_007279137.1| - 0.0018 18.7 0.0 0.0074 16.7 0.0 2.0 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|433589641|ref|YP_007279137.1| - 0.0044 16.6 0.0 0.0078 15.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Polyketide_cyc2 PF10604.4 gi|433589642|ref|YP_007279138.1| - 2.4e-12 47.2 5.0 4e-12 46.4 3.5 1.4 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc PF03364.15 gi|433589642|ref|YP_007279138.1| - 6.2e-10 39.1 0.2 1.3e-09 38.1 0.1 1.5 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport AHSA1 PF08327.6 gi|433589642|ref|YP_007279138.1| - 1.1e-05 25.5 0.1 1.7e-05 24.9 0.1 1.4 1 0 0 1 1 1 1 Activator of Hsp90 ATPase homolog 1-like protein Ion_trans_2 PF07885.11 gi|433589643|ref|YP_007279139.1| - 3.3e-17 61.9 5.7 7.6e-17 60.7 1.9 2.4 2 0 0 2 2 2 1 Ion channel Ion_trans PF00520.26 gi|433589643|ref|YP_007279139.1| - 7.4e-13 48.1 6.9 7.4e-13 48.1 4.8 2.0 2 1 0 2 2 2 1 Ion transport protein zf-ribbon_3 PF13248.1 gi|433589643|ref|YP_007279139.1| - 0.00025 20.1 0.5 0.00039 19.5 0.4 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|433589643|ref|YP_007279139.1| - 0.011 15.5 0.5 0.018 14.8 0.3 1.2 1 0 0 1 1 1 0 Double zinc ribbon TF_Zn_Ribbon PF08271.7 gi|433589643|ref|YP_007279139.1| - 0.042 13.1 0.6 1.5 8.2 0.4 2.2 1 1 1 2 2 2 0 TFIIB zinc-binding DUF843 PF05814.6 gi|433589643|ref|YP_007279139.1| - 0.081 12.7 0.5 3.6 7.4 0.0 2.4 2 0 0 2 2 2 0 Baculovirus protein of unknown function (DUF843) Ribosomal_L37e PF01907.14 gi|433589643|ref|YP_007279139.1| - 0.11 12.3 1.8 0.19 11.5 1.2 1.3 1 0 0 1 1 1 0 Ribosomal protein L37e zinc_ribbon_2 PF13240.1 gi|433589643|ref|YP_007279139.1| - 0.16 11.5 1.2 0.28 10.7 0.8 1.4 1 0 0 1 1 1 0 zinc-ribbon domain Auto_anti-p27 PF06677.7 gi|433589643|ref|YP_007279139.1| - 0.19 11.4 1.3 6.7 6.5 0.0 2.3 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zinc_ribbon_5 PF13719.1 gi|433589643|ref|YP_007279139.1| - 0.27 10.8 1.6 18 5.0 0.1 2.5 2 0 0 2 2 2 0 zinc-ribbon domain PKD_channel PF08016.7 gi|433589643|ref|YP_007279139.1| - 0.35 9.2 7.2 0.62 8.4 5.0 1.3 1 1 0 1 1 1 0 Polycystin cation channel zinc_ribbon_4 PF13717.1 gi|433589643|ref|YP_007279139.1| - 0.37 10.5 1.4 25 4.6 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|433589643|ref|YP_007279139.1| - 0.49 10.0 2.8 2 8.1 0.8 2.1 1 1 1 2 2 2 0 Putative transposase DNA-binding domain DAO PF01266.19 gi|433589644|ref|YP_007279140.1| - 4e-27 95.0 0.0 6.1e-27 94.4 0.0 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase Mqo PF06039.10 gi|433589644|ref|YP_007279140.1| - 6.7e-22 77.3 0.0 5e-14 51.3 0.0 2.0 2 0 0 2 2 2 2 Malate:quinone oxidoreductase (Mqo) NAD_binding_9 PF13454.1 gi|433589644|ref|YP_007279140.1| - 8.5e-05 22.3 0.3 0.097 12.4 0.1 2.3 2 0 0 2 2 2 2 FAD-NAD(P)-binding Pyr_redox_3 PF13738.1 gi|433589644|ref|YP_007279140.1| - 0.00041 20.4 0.0 0.36 10.8 0.0 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.9 gi|433589644|ref|YP_007279140.1| - 0.0018 18.1 0.0 1.5 8.6 0.0 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|433589644|ref|YP_007279140.1| - 0.0029 16.1 0.1 0.017 13.6 0.0 1.9 2 0 0 2 2 2 1 HI0933-like protein NAD_binding_8 PF13450.1 gi|433589644|ref|YP_007279140.1| - 0.0083 16.1 0.2 0.039 13.9 0.0 2.3 3 0 0 3 3 3 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.19 gi|433589644|ref|YP_007279140.1| - 0.0096 14.8 0.0 0.012 14.4 0.0 1.1 1 0 0 1 1 1 1 FAD binding domain Pyr_redox PF00070.22 gi|433589644|ref|YP_007279140.1| - 0.028 14.8 0.3 11 6.5 0.0 2.7 2 1 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Pyridox_oxidase PF01243.15 gi|433589645|ref|YP_007279141.1| - 3.4e-07 30.1 0.0 5.2e-07 29.5 0.0 1.3 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_ox_2 PF12900.2 gi|433589645|ref|YP_007279141.1| - 0.00059 19.6 0.0 0.00079 19.2 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase GMC_oxred_N PF00732.14 gi|433589646|ref|YP_007279142.1| - 1.9e-89 299.7 0.0 2.3e-89 299.4 0.0 1.1 1 0 0 1 1 1 1 GMC oxidoreductase GMC_oxred_C PF05199.8 gi|433589646|ref|YP_007279142.1| - 2.6e-45 154.2 0.0 4.4e-45 153.5 0.0 1.4 1 0 0 1 1 1 1 GMC oxidoreductase DAO PF01266.19 gi|433589646|ref|YP_007279142.1| - 2e-07 30.2 0.1 0.00073 18.5 0.0 2.4 2 1 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_3 PF13738.1 gi|433589646|ref|YP_007279142.1| - 1.4e-05 25.2 0.0 0.037 14.1 0.0 2.3 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|433589646|ref|YP_007279142.1| - 1.6e-05 24.8 0.2 0.00011 22.1 0.0 2.4 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.19 gi|433589646|ref|YP_007279142.1| - 8.4e-05 21.5 0.2 0.0091 14.8 0.0 2.3 2 0 0 2 2 2 2 FAD binding domain Pyr_redox_2 PF07992.9 gi|433589646|ref|YP_007279142.1| - 0.00063 19.6 0.0 0.0041 17.0 0.0 2.0 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.7 gi|433589646|ref|YP_007279142.1| - 0.0015 17.5 0.1 0.0025 16.8 0.1 1.3 1 0 0 1 1 1 1 Lycopene cyclase protein HI0933_like PF03486.9 gi|433589646|ref|YP_007279142.1| - 0.0017 16.8 0.0 0.0025 16.3 0.0 1.2 1 0 0 1 1 1 1 HI0933-like protein FAD_binding_3 PF01494.14 gi|433589646|ref|YP_007279142.1| - 0.0024 16.9 0.0 0.0037 16.3 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain Pyr_redox PF00070.22 gi|433589646|ref|YP_007279142.1| - 0.028 14.8 0.0 0.11 12.8 0.0 2.1 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase AIM24 PF01987.12 gi|433589647|ref|YP_007279143.1| - 2.7e-43 147.9 0.3 3.3e-43 147.6 0.2 1.0 1 0 0 1 1 1 1 Mitochondrial biogenesis AIM24 Pea-VEAacid PF08111.6 gi|433589647|ref|YP_007279143.1| - 0.066 13.3 0.4 0.18 11.9 0.3 1.7 1 0 0 1 1 1 0 Pea-VEAacid family Na_Ca_ex PF01699.19 gi|433589648|ref|YP_007279144.1| - 4.4e-17 61.9 27.4 4.1e-10 39.4 4.4 2.6 3 0 0 3 3 3 2 Sodium/calcium exchanger protein Zip PF02535.17 gi|433589649|ref|YP_007279145.1| - 0.00062 18.8 0.6 0.00062 18.8 0.4 2.3 1 1 1 2 2 2 1 ZIP Zinc transporter DUF3270 PF11674.3 gi|433589649|ref|YP_007279145.1| - 0.035 14.1 1.5 0.052 13.5 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3270) DUF2537 PF10801.3 gi|433589649|ref|YP_007279145.1| - 0.51 10.4 6.3 0.59 10.2 1.5 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2537) YwiC PF14256.1 gi|433589649|ref|YP_007279145.1| - 1.7 8.7 8.1 0.43 10.6 0.1 2.8 2 1 0 2 2 2 0 YwiC-like protein DUF2391 PF09622.5 gi|433589650|ref|YP_007279146.1| - 5e-05 22.6 0.2 7e-05 22.1 0.2 1.3 1 0 0 1 1 1 1 Putative integral membrane protein (DUF2391) Claudin_3 PF06653.6 gi|433589650|ref|YP_007279146.1| - 0.0096 15.6 0.2 0.025 14.2 0.0 1.5 1 1 0 1 1 1 1 Tight junction protein, Claudin-like DUF1198 PF06711.6 gi|433589650|ref|YP_007279146.1| - 0.024 14.4 0.0 0.031 14.0 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1198) DctQ PF04290.7 gi|433589650|ref|YP_007279146.1| - 0.028 14.1 0.7 0.045 13.5 0.5 1.4 1 0 0 1 1 1 0 Tripartite ATP-independent periplasmic transporters, DctQ component DDE_Tnp_1 PF01609.16 gi|433589651|ref|YP_007279147.1| - 0.0077 15.7 0.2 0.031 13.8 0.1 1.9 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1 PF01609.16 gi|433589652|ref|YP_007279148.1| - 1.2e-14 54.3 0.0 1.7e-14 53.8 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain Acetyltransf_1 PF00583.19 gi|433589653|ref|YP_007279149.1| - 3.2e-16 59.1 0.1 4.4e-16 58.6 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family FR47 PF08445.5 gi|433589653|ref|YP_007279149.1| - 4e-09 36.0 0.0 3.4e-08 33.1 0.0 2.0 1 1 1 2 2 2 1 FR47-like protein Acetyltransf_7 PF13508.1 gi|433589653|ref|YP_007279149.1| - 3.8e-08 33.3 0.0 5.7e-08 32.8 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|433589653|ref|YP_007279149.1| - 4.1e-08 33.5 0.0 4.7e-08 33.3 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|433589653|ref|YP_007279149.1| - 4.4e-07 30.0 0.0 5.7e-07 29.6 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|433589653|ref|YP_007279149.1| - 0.00017 21.5 0.0 0.00021 21.1 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|433589653|ref|YP_007279149.1| - 0.00028 20.7 0.0 0.00045 20.0 0.0 1.6 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_9 PF13527.1 gi|433589653|ref|YP_007279149.1| - 0.00052 19.8 0.0 0.0014 18.4 0.0 1.7 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|433589653|ref|YP_007279149.1| - 0.00085 19.3 0.0 0.00093 19.1 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.1 gi|433589653|ref|YP_007279149.1| - 0.022 14.7 0.0 0.032 14.1 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Usp PF00582.21 gi|433589654|ref|YP_007279150.1| - 1.8e-18 67.1 0.1 2e-18 66.9 0.1 1.1 1 0 0 1 1 1 1 Universal stress protein family AMP-binding PF00501.23 gi|433589655|ref|YP_007279151.1| - 8.8e-85 284.5 0.0 1e-84 284.3 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|433589655|ref|YP_007279151.1| - 5e-20 72.2 0.8 1.6e-19 70.5 0.5 2.0 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Rieske PF00355.21 gi|433589657|ref|YP_007279153.1| - 7.7e-07 28.6 0.2 1.3e-06 27.8 0.2 1.4 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain HAD_2 PF13419.1 gi|433589658|ref|YP_007279154.1| - 5.3e-10 39.8 0.5 2.9e-08 34.1 0.4 2.2 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|433589658|ref|YP_007279154.1| - 4.2e-06 27.3 0.2 3.3e-05 24.4 0.1 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase DUF3267 PF11667.3 gi|433589659|ref|YP_007279155.1| - 0.036 14.2 0.6 0.21 11.8 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3267) Peptidase_M50 PF02163.17 gi|433589659|ref|YP_007279155.1| - 0.24 10.3 11.3 15 4.4 5.0 3.3 1 1 1 2 2 2 0 Peptidase family M50 Flavi_M PF01004.14 gi|433589659|ref|YP_007279155.1| - 5.9 6.4 6.5 15 5.0 0.8 2.5 2 0 0 2 2 2 0 Flavivirus envelope glycoprotein M UPF0146 PF03686.8 gi|433589660|ref|YP_007279156.1| - 3.7e-30 104.3 0.0 4.1e-30 104.1 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0146) Peptidase_M54 PF07998.6 gi|433589661|ref|YP_007279157.1| - 8.4e-22 77.8 0.0 1e-21 77.5 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M54 Reprolysin_2 PF13574.1 gi|433589661|ref|YP_007279157.1| - 7.4e-05 22.8 0.0 8.9e-05 22.6 0.0 1.1 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Reprolysin_4 PF13583.1 gi|433589661|ref|YP_007279157.1| - 0.00015 21.3 0.0 0.00018 21.1 0.0 1.1 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Peptidase_M10 PF00413.19 gi|433589661|ref|YP_007279157.1| - 0.00024 20.8 0.0 0.00052 19.7 0.0 1.3 1 1 0 1 1 1 1 Matrixin Reprolysin_3 PF13582.1 gi|433589661|ref|YP_007279157.1| - 0.00038 20.9 0.1 0.00052 20.5 0.0 1.3 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Reprolysin_5 PF13688.1 gi|433589661|ref|YP_007279157.1| - 0.00055 19.9 0.0 0.00065 19.6 0.0 1.2 1 0 0 1 1 1 1 Metallo-peptidase family M12 Peptidase_M66 PF10462.4 gi|433589661|ref|YP_007279157.1| - 0.0013 17.6 0.0 0.0018 17.2 0.0 1.2 1 0 0 1 1 1 1 Peptidase M66 DUF1025 PF06262.6 gi|433589661|ref|YP_007279157.1| - 0.017 14.9 0.0 0.027 14.2 0.0 1.3 1 0 0 1 1 1 0 Possibl zinc metallo-peptidase ABC_tran PF00005.22 gi|433589663|ref|YP_007279159.1| - 4e-40 137.2 0.0 2.8e-20 73.0 0.0 2.6 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|433589663|ref|YP_007279159.1| - 4.8e-16 59.5 0.6 4.1e-06 26.9 0.0 4.2 2 2 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|433589663|ref|YP_007279159.1| - 7e-14 51.5 6.1 8.2e-05 21.9 0.1 4.6 5 0 0 5 5 5 2 RecF/RecN/SMC N terminal domain RLI PF04068.10 gi|433589663|ref|YP_007279159.1| - 5.9e-12 44.9 1.9 1.1e-11 44.1 1.3 1.5 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI AAA_17 PF13207.1 gi|433589663|ref|YP_007279159.1| - 2.9e-08 34.5 0.5 0.0058 17.4 0.0 3.1 2 2 1 3 3 2 2 AAA domain AAA_22 PF13401.1 gi|433589663|ref|YP_007279159.1| - 1.1e-06 28.7 0.6 0.0078 16.3 0.0 3.3 2 2 0 2 2 2 2 AAA domain AAA_23 PF13476.1 gi|433589663|ref|YP_007279159.1| - 2.2e-05 24.8 0.0 0.22 11.8 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA PF00004.24 gi|433589663|ref|YP_007279159.1| - 2.7e-05 24.3 0.0 0.12 12.5 0.0 3.0 4 0 0 4 4 2 2 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.1 gi|433589663|ref|YP_007279159.1| - 3.1e-05 23.4 2.6 0.15 11.4 0.4 3.7 3 1 0 3 3 3 2 AAA domain AAA_16 PF13191.1 gi|433589663|ref|YP_007279159.1| - 4.5e-05 23.5 3.5 0.16 11.9 0.3 3.0 2 2 0 2 2 2 2 AAA ATPase domain RNA_helicase PF00910.17 gi|433589663|ref|YP_007279159.1| - 7.3e-05 22.8 0.0 0.43 10.7 0.0 2.7 2 0 0 2 2 2 2 RNA helicase DUF258 PF03193.11 gi|433589663|ref|YP_007279159.1| - 9.7e-05 21.6 0.0 0.23 10.6 0.0 2.3 2 0 0 2 2 2 2 Protein of unknown function, DUF258 Fer4 PF00037.22 gi|433589663|ref|YP_007279159.1| - 0.00025 20.5 1.3 0.00025 20.5 0.9 2.7 3 0 0 3 3 3 1 4Fe-4S binding domain AAA_29 PF13555.1 gi|433589663|ref|YP_007279159.1| - 0.0005 19.5 0.3 0.92 9.0 0.0 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_18 PF13238.1 gi|433589663|ref|YP_007279159.1| - 0.00063 20.0 0.0 2.1 8.6 0.0 2.7 2 1 0 2 2 2 2 AAA domain NACHT PF05729.7 gi|433589663|ref|YP_007279159.1| - 0.0011 18.6 0.1 1.8 8.2 0.0 2.8 3 0 0 3 3 2 2 NACHT domain AAA_33 PF13671.1 gi|433589663|ref|YP_007279159.1| - 0.0011 18.8 0.9 0.69 9.7 0.9 3.2 2 1 0 2 2 2 1 AAA domain SbcCD_C PF13558.1 gi|433589663|ref|YP_007279159.1| - 0.0012 18.6 0.3 0.23 11.3 0.1 2.9 2 2 0 2 2 2 1 Putative exonuclease SbcCD, C subunit AAA_14 PF13173.1 gi|433589663|ref|YP_007279159.1| - 0.0019 18.0 0.2 4.5 7.1 0.0 3.7 3 1 1 4 4 3 0 AAA domain Fer4_6 PF12837.2 gi|433589663|ref|YP_007279159.1| - 0.0036 17.1 1.8 0.0036 17.1 1.2 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain Rad17 PF03215.10 gi|433589663|ref|YP_007279159.1| - 0.004 15.9 0.0 0.48 9.0 0.0 2.5 2 0 0 2 2 2 1 Rad17 cell cycle checkpoint protein MobB PF03205.9 gi|433589663|ref|YP_007279159.1| - 0.0059 16.3 0.3 2.4 7.8 0.0 2.6 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B RuvB_N PF05496.7 gi|433589663|ref|YP_007279159.1| - 0.0087 15.1 0.1 1.6 7.7 0.0 2.7 3 0 0 3 3 2 1 Holliday junction DNA helicase ruvB N-terminus AAA_24 PF13479.1 gi|433589663|ref|YP_007279159.1| - 0.01 15.4 0.2 4.2 6.8 0.0 2.4 2 0 0 2 2 2 0 AAA domain AAA_10 PF12846.2 gi|433589663|ref|YP_007279159.1| - 0.012 15.0 0.8 1.6 8.0 0.0 3.0 3 0 0 3 3 3 0 AAA-like domain Fer4_7 PF12838.2 gi|433589663|ref|YP_007279159.1| - 0.012 15.9 11.1 0.027 14.8 7.7 1.6 1 0 0 1 1 1 0 4Fe-4S dicluster domain NB-ARC PF00931.17 gi|433589663|ref|YP_007279159.1| - 0.021 13.6 0.1 2.1 7.1 0.1 2.5 2 0 0 2 2 2 0 NB-ARC domain Miro PF08477.8 gi|433589663|ref|YP_007279159.1| - 0.031 14.7 0.0 20 5.7 0.0 3.2 3 0 0 3 3 3 0 Miro-like protein AAA_28 PF13521.1 gi|433589663|ref|YP_007279159.1| - 0.052 13.5 0.3 3 7.8 0.0 3.1 3 0 0 3 3 3 0 AAA domain AAA_15 PF13175.1 gi|433589663|ref|YP_007279159.1| - 0.073 12.1 0.1 0.67 8.9 0.0 2.3 3 0 0 3 3 2 0 AAA ATPase domain AAA_5 PF07728.9 gi|433589663|ref|YP_007279159.1| - 0.076 12.7 0.1 12 5.5 0.0 2.8 3 0 0 3 3 2 0 AAA domain (dynein-related subfamily) Fer4_9 PF13187.1 gi|433589663|ref|YP_007279159.1| - 0.089 13.0 12.0 0.17 12.1 8.3 1.4 1 0 0 1 1 1 0 4Fe-4S dicluster domain VirE PF05272.6 gi|433589663|ref|YP_007279159.1| - 0.1 12.0 0.0 10 5.5 0.0 2.6 3 0 0 3 3 2 0 Virulence-associated protein E MMR_HSR1 PF01926.18 gi|433589663|ref|YP_007279159.1| - 0.11 12.4 0.0 0.88 9.5 0.0 2.4 2 1 0 2 2 2 0 50S ribosome-binding GTPase DUF87 PF01935.12 gi|433589663|ref|YP_007279159.1| - 0.11 12.2 1.6 20 4.9 0.0 3.4 4 1 0 4 4 3 0 Domain of unknown function DUF87 Fer4_2 PF12797.2 gi|433589663|ref|YP_007279159.1| - 0.15 12.0 11.8 0.13 12.2 1.2 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain AAA_13 PF13166.1 gi|433589663|ref|YP_007279159.1| - 0.27 9.6 0.0 9.2 4.5 0.0 2.2 2 0 0 2 2 2 0 AAA domain ArgK PF03308.11 gi|433589663|ref|YP_007279159.1| - 0.29 9.8 0.9 5.1 5.7 0.0 2.1 2 0 0 2 2 2 0 ArgK protein Fer4_21 PF14697.1 gi|433589663|ref|YP_007279159.1| - 0.33 10.8 8.9 0.63 9.9 6.1 1.5 1 0 0 1 1 1 0 4Fe-4S dicluster domain SRP54 PF00448.17 gi|433589663|ref|YP_007279159.1| - 0.43 9.9 2.8 4.6 6.6 0.1 2.5 3 0 0 3 3 2 0 SRP54-type protein, GTPase domain AAA_19 PF13245.1 gi|433589663|ref|YP_007279159.1| - 0.46 10.2 1.6 7 6.4 0.0 3.1 3 0 0 3 3 3 0 Part of AAA domain NTPase_1 PF03266.10 gi|433589663|ref|YP_007279159.1| - 0.56 9.8 4.1 12 5.5 0.1 3.0 4 0 0 4 4 2 0 NTPase Fer4_10 PF13237.1 gi|433589663|ref|YP_007279159.1| - 0.93 9.3 12.1 1.9 8.3 8.4 1.5 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|433589663|ref|YP_007279159.1| - 1.5 9.5 9.9 5.3 7.8 6.9 1.9 1 1 0 1 1 1 0 4Fe-4S double cluster binding domain DUF2391 PF09622.5 gi|433589664|ref|YP_007279160.1| - 0.0045 16.1 0.5 0.005 16.0 0.4 1.0 1 0 0 1 1 1 1 Putative integral membrane protein (DUF2391) Maff2 PF12750.2 gi|433589664|ref|YP_007279160.1| - 0.04 13.4 1.0 0.071 12.6 0.1 1.8 1 1 1 2 2 2 0 Maff2 family DUF1772 PF08592.6 gi|433589664|ref|YP_007279160.1| - 0.12 12.1 6.0 0.14 11.8 4.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1772) DUF3814 PF12769.2 gi|433589664|ref|YP_007279160.1| - 0.2 11.8 1.9 0.33 11.1 1.3 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3814) TctB PF07331.6 gi|433589664|ref|YP_007279160.1| - 0.21 11.2 6.5 0.38 10.3 4.5 1.5 1 1 0 1 1 1 0 Tripartite tricarboxylate transporter TctB family Bactofilin PF04519.8 gi|433589665|ref|YP_007279161.1| - 4.9e-06 26.4 19.0 5.2e-06 26.3 4.6 3.8 2 1 2 4 4 4 3 Polymer-forming cytoskeletal DUF3494 PF11999.3 gi|433589665|ref|YP_007279161.1| - 0.00024 20.8 17.7 0.00096 18.8 0.1 4.2 2 1 1 4 4 4 2 Protein of unknown function (DUF3494) CARDB PF07705.6 gi|433589665|ref|YP_007279161.1| - 0.17 11.9 3.3 0.22 11.5 0.2 2.6 3 0 0 3 3 3 0 CARDB DUF4114 PF13448.1 gi|433589668|ref|YP_007279164.1| - 0.031 15.1 0.7 0.031 15.1 0.5 2.5 2 1 0 2 2 2 0 Domain of unknown function (DUF4114) DDE_Tnp_1 PF01609.16 gi|433589669|ref|YP_007279165.1| - 1.3e-25 90.1 0.0 1.8e-25 89.7 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_2 PF04693.7 gi|433589669|ref|YP_007279165.1| - 0.0012 17.9 0.1 0.0018 17.3 0.1 1.2 1 0 0 1 1 1 1 Archaeal putative transposase ISC1217 DDE_Tnp_1_2 PF13586.1 gi|433589669|ref|YP_007279165.1| - 0.0082 16.3 0.0 0.023 14.8 0.0 1.7 1 0 0 1 1 1 1 Transposase DDE domain DUF2249 PF10006.4 gi|433589669|ref|YP_007279165.1| - 0.022 14.3 0.2 0.067 12.7 0.1 1.9 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2249) fn3 PF00041.16 gi|433589670|ref|YP_007279166.1| - 0.0083 16.2 0.8 4.9 7.3 0.1 3.5 3 1 0 3 3 3 2 Fibronectin type III domain Fn3-like PF14310.1 gi|433589670|ref|YP_007279166.1| - 0.019 14.9 0.4 1.4 8.8 0.0 3.5 2 2 0 2 2 2 0 Fibronectin type III-like domain Peptidase_U35 PF04586.12 gi|433589670|ref|YP_007279166.1| - 0.023 14.7 0.2 0.051 13.6 0.1 1.5 1 0 0 1 1 1 0 Caudovirus prohead protease DUF1093 PF06486.6 gi|433589670|ref|YP_007279166.1| - 0.032 14.6 0.3 3.1 8.2 0.1 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1093) TAT_signal PF10518.4 gi|433589671|ref|YP_007279167.1| - 0.11 12.6 4.2 0.24 11.5 2.9 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence DUF4232 PF14016.1 gi|433589672|ref|YP_007279168.1| - 0.023 14.3 4.0 0.7 9.5 0.3 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF4232) CBM_2 PF00553.14 gi|433589672|ref|YP_007279168.1| - 0.027 14.4 0.1 0.2 11.6 0.1 2.3 1 1 0 1 1 1 0 Cellulose binding domain AraC_binding_2 PF14525.1 gi|433589672|ref|YP_007279168.1| - 0.11 12.0 0.1 0.3 10.6 0.1 1.7 2 0 0 2 2 2 0 AraC-binding-like domain TAT_signal PF10518.4 gi|433589673|ref|YP_007279169.1| - 0.2 11.7 3.7 0.46 10.6 2.5 1.7 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence CARDB PF07705.6 gi|433589674|ref|YP_007279170.1| - 1.1e-12 47.8 11.5 3.2e-06 27.0 0.2 3.9 4 0 0 4 4 4 3 CARDB A2M_N_2 PF07703.9 gi|433589674|ref|YP_007279170.1| - 0.00053 19.7 0.2 0.25 11.1 0.0 3.1 3 0 0 3 3 3 1 Alpha-2-macroglobulin family N-terminal region FixG_C PF11614.3 gi|433589674|ref|YP_007279170.1| - 0.0022 18.0 3.6 1.1 9.3 0.0 4.0 3 2 2 5 5 5 1 IG-like fold at C-terminal of FixG, putative oxidoreductase DUF1034 PF06280.7 gi|433589674|ref|YP_007279170.1| - 0.025 14.9 10.2 8.4 6.8 0.0 4.3 2 2 2 4 4 4 0 Fn3-like domain (DUF1034) DUF4139 PF13598.1 gi|433589674|ref|YP_007279170.1| - 0.055 12.7 2.2 1.4 8.1 0.8 2.6 2 1 0 2 2 2 0 Domain of unknown function (DUF4139) Transglut_C PF00927.17 gi|433589674|ref|YP_007279170.1| - 0.092 12.7 0.0 0.34 10.9 0.0 2.0 2 0 0 2 2 2 0 Transglutaminase family, C-terminal ig like domain Fn3-like PF14310.1 gi|433589674|ref|YP_007279170.1| - 0.11 12.4 5.2 8.7 6.3 0.1 4.8 5 1 0 5 5 5 0 Fibronectin type III-like domain Arrestin_C PF02752.17 gi|433589674|ref|YP_007279170.1| - 0.14 12.2 0.0 3.8 7.6 0.0 2.5 2 0 0 2 2 2 0 Arrestin (or S-antigen), C-terminal domain DUF11 PF01345.13 gi|433589674|ref|YP_007279170.1| - 0.42 10.7 10.2 2.3 8.3 0.7 3.0 3 0 0 3 3 3 0 Domain of unknown function DUF11 NPCBM_assoc PF10633.4 gi|433589674|ref|YP_007279170.1| - 3.7 7.6 9.7 13 5.9 0.1 4.0 4 0 0 4 4 4 0 NPCBM-associated, NEW3 domain of alpha-galactosidase Peptidase_S24 PF00717.18 gi|433589675|ref|YP_007279171.1| - 2.3e-06 27.1 0.0 4.5e-06 26.2 0.0 1.4 1 0 0 1 1 1 1 Peptidase S24-like VirB8 PF04335.8 gi|433589675|ref|YP_007279171.1| - 0.024 14.1 0.0 0.024 14.1 0.0 2.0 3 0 0 3 3 3 0 VirB8 protein RskA PF10099.4 gi|433589675|ref|YP_007279171.1| - 0.028 14.1 2.8 0.24 11.1 0.0 3.1 3 0 0 3 3 3 0 Anti-sigma-K factor rskA Herpes_UL45 PF05473.7 gi|433589675|ref|YP_007279171.1| - 0.051 12.9 0.1 0.1 12.0 0.1 1.4 1 0 0 1 1 1 0 UL45 protein CbtB PF09489.5 gi|433589675|ref|YP_007279171.1| - 0.13 12.1 0.1 0.13 12.1 0.1 3.5 6 0 0 6 6 6 0 Probable cobalt transporter subunit (CbtB) DUF2749 PF10907.3 gi|433589676|ref|YP_007279172.1| - 0.026 14.3 0.4 0.074 12.9 0.1 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2749) AMP-binding PF00501.23 gi|433589677|ref|YP_007279173.1| - 1.8e-89 300.0 0.3 2.2e-89 299.7 0.2 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|433589677|ref|YP_007279173.1| - 2e-17 63.8 0.1 4.2e-17 62.8 0.1 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain HTH_24 PF13412.1 gi|433589678|ref|YP_007279174.1| - 7.9e-05 21.9 0.0 0.00012 21.4 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding GntR PF00392.16 gi|433589678|ref|YP_007279174.1| - 0.00087 18.6 0.1 0.0016 17.8 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family TrmB PF01978.14 gi|433589678|ref|YP_007279174.1| - 0.00098 18.7 0.1 0.0013 18.3 0.1 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.7 gi|433589678|ref|YP_007279174.1| - 0.0012 18.4 0.0 0.0018 17.8 0.0 1.2 1 0 0 1 1 1 1 HTH domain MarR_2 PF12802.2 gi|433589678|ref|YP_007279174.1| - 0.0018 17.8 0.0 0.0021 17.6 0.0 1.2 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|433589678|ref|YP_007279174.1| - 0.0021 17.7 0.0 0.0027 17.3 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|433589678|ref|YP_007279174.1| - 0.0026 18.0 0.0 0.0037 17.5 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain TFIIE_alpha PF02002.12 gi|433589678|ref|YP_007279174.1| - 0.0033 16.8 0.0 0.0041 16.6 0.0 1.3 1 0 0 1 1 1 1 TFIIE alpha subunit PaaX PF07848.7 gi|433589678|ref|YP_007279174.1| - 0.023 14.6 0.0 0.034 14.1 0.0 1.2 1 0 0 1 1 1 0 PaaX-like protein DUF2540 PF10802.3 gi|433589678|ref|YP_007279174.1| - 0.029 14.0 0.0 0.048 13.3 0.0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2540) HTH_5 PF01022.15 gi|433589678|ref|YP_007279174.1| - 0.037 13.6 0.0 0.052 13.2 0.0 1.2 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_12 PF08461.5 gi|433589678|ref|YP_007279174.1| - 0.038 13.7 0.1 0.11 12.2 0.1 1.7 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain HTH_IclR PF09339.5 gi|433589678|ref|YP_007279174.1| - 0.066 12.8 0.0 0.14 11.7 0.0 1.5 2 0 0 2 2 2 0 IclR helix-turn-helix domain HTH_28 PF13518.1 gi|433589678|ref|YP_007279174.1| - 0.088 12.8 0.0 0.16 11.9 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_20 PF12840.2 gi|433589678|ref|YP_007279174.1| - 0.096 12.4 0.0 0.14 11.9 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|433589678|ref|YP_007279174.1| - 0.12 12.2 0.0 0.15 11.8 0.0 1.2 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_36 PF13730.1 gi|433589678|ref|YP_007279174.1| - 0.12 12.5 0.0 0.25 11.5 0.0 1.5 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_29 PF13551.1 gi|433589678|ref|YP_007279174.1| - 0.12 12.4 0.0 0.15 12.2 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn helix Peptidase_U4 PF03419.8 gi|433589679|ref|YP_007279175.1| - 0.014 14.4 0.8 0.41 9.6 0.0 2.0 2 0 0 2 2 2 0 Sporulation factor SpoIIGA ABC2_membrane_4 PF12730.2 gi|433589679|ref|YP_007279175.1| - 0.11 11.6 3.4 0.23 10.6 2.4 1.5 1 1 0 1 1 1 0 ABC-2 family transporter protein FixH PF05751.6 gi|433589679|ref|YP_007279175.1| - 0.15 11.8 1.3 0.25 11.1 0.9 1.3 1 0 0 1 1 1 0 FixH MLANA PF14991.1 gi|433589679|ref|YP_007279175.1| - 0.47 10.4 1.5 1.6 8.7 0.2 2.1 1 1 1 2 2 2 0 Protein melan-A DUF4131 PF13567.1 gi|433589679|ref|YP_007279175.1| - 4.7 6.5 9.5 1.3e+02 1.9 6.6 2.1 1 1 0 1 1 1 0 Domain of unknown function (DUF4131) BPD_transp_2 PF02653.11 gi|433589679|ref|YP_007279175.1| - 9.7 5.0 11.3 35 3.2 5.9 2.0 1 1 1 2 2 2 0 Branched-chain amino acid transport system / permease component NAD_synthase PF02540.12 gi|433589680|ref|YP_007279176.1| - 4.2e-70 235.3 0.0 5e-70 235.1 0.0 1.0 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.11 gi|433589680|ref|YP_007279176.1| - 3.5e-07 29.1 0.0 0.00038 19.1 0.0 2.1 2 0 0 2 2 2 2 tRNA methyl transferase QueC PF06508.8 gi|433589680|ref|YP_007279176.1| - 0.00034 19.9 0.0 0.0012 18.1 0.0 1.8 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC Asn_synthase PF00733.16 gi|433589680|ref|YP_007279176.1| - 0.00087 18.8 0.1 0.0014 18.2 0.0 1.3 1 0 0 1 1 1 1 Asparagine synthase DUF2694 PF10904.3 gi|433589680|ref|YP_007279176.1| - 0.077 13.0 0.1 0.2 11.7 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2694) BPD_transp_2 PF02653.11 gi|433589681|ref|YP_007279177.1| - 0.53 9.1 11.0 0.096 11.6 3.0 2.1 2 0 0 2 2 2 0 Branched-chain amino acid transport system / permease component DUF3188 PF11384.3 gi|433589681|ref|YP_007279177.1| - 0.69 9.5 3.0 1 8.9 0.1 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3188) Bac_rhodopsin PF01036.13 gi|433589682|ref|YP_007279178.1| - 6.8e-65 218.4 20.8 7.6e-65 218.3 14.4 1.0 1 0 0 1 1 1 1 Bacteriorhodopsin-like protein DUF21 PF01595.15 gi|433589682|ref|YP_007279178.1| - 0.011 14.9 6.5 0.011 14.9 4.5 2.5 2 1 1 3 3 3 0 Domain of unknown function DUF21 BCD PF15461.1 gi|433589684|ref|YP_007279180.1| - 1.3e-79 267.2 19.0 1.8e-79 266.8 13.2 1.2 1 0 0 1 1 1 1 Beta-carotene 15,15'-dioxygenase T2SE PF00437.15 gi|433589685|ref|YP_007279181.1| - 8.9e-13 47.7 0.0 1.5e-12 47.0 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein KH_1 PF00013.24 gi|433589685|ref|YP_007279181.1| - 4.6e-06 26.1 2.1 5.3e-06 25.9 0.2 2.1 2 0 0 2 2 1 1 KH domain AAA_17 PF13207.1 gi|433589685|ref|YP_007279181.1| - 2.4e-05 25.1 0.0 0.00013 22.7 0.0 2.3 2 0 0 2 2 1 1 AAA domain Thymidylate_kin PF02223.12 gi|433589685|ref|YP_007279181.1| - 0.00056 19.3 0.0 0.0011 18.3 0.0 1.5 1 0 0 1 1 1 1 Thymidylate kinase AAA_33 PF13671.1 gi|433589685|ref|YP_007279181.1| - 0.0007 19.4 0.0 0.0098 15.7 0.0 2.4 2 1 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|433589685|ref|YP_007279181.1| - 0.00092 19.2 0.0 0.0031 17.5 0.0 1.8 2 0 0 2 2 2 1 AAA ATPase domain AAA_19 PF13245.1 gi|433589685|ref|YP_007279181.1| - 0.0013 18.4 1.2 0.0017 18.0 0.0 1.9 2 0 0 2 2 1 1 Part of AAA domain AAA_25 PF13481.1 gi|433589685|ref|YP_007279181.1| - 0.0017 17.8 0.0 0.0056 16.1 0.0 1.9 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.7 gi|433589685|ref|YP_007279181.1| - 0.002 17.2 0.0 0.0039 16.3 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin IstB_IS21 PF01695.12 gi|433589685|ref|YP_007279181.1| - 0.0025 17.2 0.0 0.0041 16.5 0.0 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein KH_2 PF07650.12 gi|433589685|ref|YP_007279181.1| - 0.0027 17.2 1.7 0.0083 15.6 1.2 1.8 1 0 0 1 1 1 1 KH domain AAA_18 PF13238.1 gi|433589685|ref|YP_007279181.1| - 0.0039 17.5 0.3 0.012 15.9 0.0 2.1 2 0 0 2 2 1 1 AAA domain AAA_30 PF13604.1 gi|433589685|ref|YP_007279181.1| - 0.0046 16.5 0.0 0.011 15.3 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|433589685|ref|YP_007279181.1| - 0.005 16.3 0.0 0.014 14.9 0.0 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain NTPase_1 PF03266.10 gi|433589685|ref|YP_007279181.1| - 0.0064 16.2 0.0 0.017 14.8 0.0 1.7 1 0 0 1 1 1 1 NTPase KTI12 PF08433.5 gi|433589685|ref|YP_007279181.1| - 0.0073 15.5 0.0 0.016 14.4 0.0 1.5 1 0 0 1 1 1 1 Chromatin associated protein KTI12 PIN_4 PF13638.1 gi|433589685|ref|YP_007279181.1| - 0.0078 16.3 0.0 0.024 14.7 0.0 1.9 1 1 0 1 1 1 1 PIN domain NACHT PF05729.7 gi|433589685|ref|YP_007279181.1| - 0.014 15.0 0.0 0.026 14.1 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_28 PF13521.1 gi|433589685|ref|YP_007279181.1| - 0.016 15.1 0.0 0.062 13.2 0.0 2.0 2 0 0 2 2 1 0 AAA domain KaiC PF06745.8 gi|433589685|ref|YP_007279181.1| - 0.021 13.9 0.0 0.067 12.3 0.0 1.8 2 0 0 2 2 2 0 KaiC AAA_5 PF07728.9 gi|433589685|ref|YP_007279181.1| - 0.021 14.5 0.0 0.045 13.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA PF00004.24 gi|433589685|ref|YP_007279181.1| - 0.021 14.9 0.0 0.048 13.8 0.0 1.6 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|433589685|ref|YP_007279181.1| - 0.023 14.8 0.0 0.054 13.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|433589685|ref|YP_007279181.1| - 0.028 14.3 0.0 0.053 13.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|433589685|ref|YP_007279181.1| - 0.035 14.2 0.0 0.069 13.3 0.0 1.5 1 0 0 1 1 1 0 RNA helicase KH_3 PF13014.1 gi|433589685|ref|YP_007279181.1| - 0.035 13.7 0.2 0.1 12.2 0.2 1.8 1 0 0 1 1 1 0 KH domain FtsK_SpoIIIE PF01580.13 gi|433589685|ref|YP_007279181.1| - 0.038 13.4 0.0 0.095 12.1 0.0 1.6 1 0 0 1 1 1 0 FtsK/SpoIIIE family KH_5 PF13184.1 gi|433589685|ref|YP_007279181.1| - 0.041 13.7 0.2 0.11 12.2 0.2 1.8 1 0 0 1 1 1 0 NusA-like KH domain NB-ARC PF00931.17 gi|433589685|ref|YP_007279181.1| - 0.075 11.8 0.0 0.12 11.1 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_10 PF12846.2 gi|433589685|ref|YP_007279181.1| - 0.09 12.1 0.0 0.17 11.2 0.0 1.4 1 0 0 1 1 1 0 AAA-like domain Sigma54_activat PF00158.21 gi|433589685|ref|YP_007279181.1| - 0.091 12.2 0.0 0.19 11.1 0.0 1.5 1 0 0 1 1 1 0 Sigma-54 interaction domain APS_kinase PF01583.15 gi|433589685|ref|YP_007279181.1| - 0.099 12.3 0.0 0.24 11.0 0.0 1.6 1 0 0 1 1 1 0 Adenylylsulphate kinase Viral_helicase1 PF01443.13 gi|433589685|ref|YP_007279181.1| - 0.11 11.9 0.0 0.22 10.9 0.0 1.5 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase Rad17 PF03215.10 gi|433589685|ref|YP_007279181.1| - 0.33 9.5 0.0 0.47 9.0 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein MCPsignal PF00015.16 gi|433589686|ref|YP_007279182.1| - 4.7e-31 108.0 45.5 2.2e-29 102.5 22.1 2.3 1 1 1 2 2 2 2 Methyl-accepting chemotaxis protein (MCP) signalling domain Protoglobin PF11563.3 gi|433589686|ref|YP_007279182.1| - 5.8e-28 97.5 10.9 6.9e-27 94.0 0.2 3.7 4 1 0 4 4 4 2 Protoglobin Hemerythrin PF01814.18 gi|433589686|ref|YP_007279182.1| - 0.014 15.5 21.5 0.018 15.2 3.6 3.5 1 1 1 3 3 3 0 Hemerythrin HHE cation binding domain CorA PF01544.13 gi|433589686|ref|YP_007279182.1| - 0.019 13.9 11.8 0.23 10.4 0.8 3.2 1 1 1 2 2 2 0 CorA-like Mg2+ transporter protein AAA_13 PF13166.1 gi|433589686|ref|YP_007279182.1| - 0.02 13.3 18.7 0.27 9.6 5.2 2.1 1 1 1 2 2 2 0 AAA domain DUF948 PF06103.6 gi|433589686|ref|YP_007279182.1| - 0.12 12.2 17.5 1.5 8.7 0.8 4.8 2 2 2 4 4 4 0 Bacterial protein of unknown function (DUF948) BLOC1_2 PF10046.4 gi|433589686|ref|YP_007279182.1| - 0.12 12.5 19.1 2.7 8.1 0.3 5.7 3 2 4 7 7 6 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 PhaP_Bmeg PF09602.5 gi|433589686|ref|YP_007279182.1| - 0.28 10.9 9.7 1.6 8.5 0.7 3.9 3 1 0 3 3 3 0 Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg) Bacillus_HBL PF05791.6 gi|433589686|ref|YP_007279182.1| - 0.31 10.3 4.4 1.6 8.0 0.1 3.1 3 1 0 3 3 3 0 Bacillus haemolytic enterotoxin (HBL) DUF1664 PF07889.7 gi|433589686|ref|YP_007279182.1| - 0.43 10.3 21.9 0.15 11.8 1.4 4.6 1 1 4 5 5 5 0 Protein of unknown function (DUF1664) V_ATPase_I PF01496.14 gi|433589686|ref|YP_007279182.1| - 0.72 7.6 11.5 1.1 7.0 7.9 1.2 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family TMPIT PF07851.8 gi|433589686|ref|YP_007279182.1| - 0.9 8.5 6.9 2.9 6.8 0.9 2.6 2 1 0 2 2 2 0 TMPIT-like protein Baculo_PEP_C PF04513.7 gi|433589686|ref|YP_007279182.1| - 1.1 9.0 16.7 2.5 7.9 0.1 4.5 2 2 2 4 4 4 0 Baculovirus polyhedron envelope protein, PEP, C terminus Syntaxin-6_N PF09177.6 gi|433589686|ref|YP_007279182.1| - 1.8 9.0 21.8 0.39 11.1 0.9 5.4 2 1 2 4 4 4 0 Syntaxin 6, N-terminal NPV_P10 PF05531.7 gi|433589686|ref|YP_007279182.1| - 3 8.1 22.2 0.26 11.5 0.8 5.1 2 2 1 4 4 4 0 Nucleopolyhedrovirus P10 protein Syntaxin PF00804.20 gi|433589686|ref|YP_007279182.1| - 4.6 7.4 19.0 41 4.4 0.7 4.6 1 1 2 3 3 3 0 Syntaxin Laminin_II PF06009.7 gi|433589686|ref|YP_007279182.1| - 9.1 6.0 27.4 10 5.8 1.8 4.2 2 2 2 4 4 4 0 Laminin Domain II Peptidase_M20 PF01546.23 gi|433589687|ref|YP_007279183.1| - 1.8e-30 105.8 3.9 2.3e-30 105.5 2.7 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|433589687|ref|YP_007279183.1| - 1e-16 60.6 0.2 2.1e-16 59.6 0.1 1.5 1 0 0 1 1 1 1 Peptidase dimerisation domain Yip1 PF04893.12 gi|433589688|ref|YP_007279184.1| - 0.03 13.8 26.4 0.054 12.9 18.3 1.4 1 1 0 1 1 1 0 Yip1 domain DUF2953 PF11167.3 gi|433589688|ref|YP_007279184.1| - 0.095 12.6 1.0 0.25 11.2 0.7 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF2953) Oxidored_q1_N PF00662.15 gi|433589688|ref|YP_007279184.1| - 0.17 11.5 0.1 0.17 11.5 0.1 2.1 3 0 0 3 3 3 0 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus DUF360 PF04020.8 gi|433589688|ref|YP_007279184.1| - 3.5 8.0 15.6 20 5.5 10.8 2.0 1 1 0 1 1 1 0 Membrane protein of unknown function Peptidase_M32 PF02074.10 gi|433589689|ref|YP_007279185.1| - 1.3e-151 505.6 0.7 1.5e-151 505.4 0.5 1.0 1 0 0 1 1 1 1 Carboxypeptidase Taq (M32) metallopeptidase DUF3252 PF11623.3 gi|433589689|ref|YP_007279185.1| - 0.097 12.0 0.0 0.27 10.6 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3252) adh_short PF00106.20 gi|433589690|ref|YP_007279186.1| - 2.9e-37 128.1 4.6 3.5e-37 127.8 2.7 1.4 2 0 0 2 2 2 1 short chain dehydrogenase KR PF08659.5 gi|433589690|ref|YP_007279186.1| - 1.6e-15 57.2 1.4 2.6e-15 56.5 1.0 1.2 1 0 0 1 1 1 1 KR domain adh_short_C2 PF13561.1 gi|433589690|ref|YP_007279186.1| - 4.4e-14 52.8 0.0 5.9e-14 52.4 0.0 1.2 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase NAD_binding_10 PF13460.1 gi|433589690|ref|YP_007279186.1| - 8.2e-07 29.1 1.5 1.2e-06 28.6 1.1 1.3 1 0 0 1 1 1 1 NADH(P)-binding Epimerase PF01370.16 gi|433589690|ref|YP_007279186.1| - 0.00046 19.7 0.1 0.0015 17.9 0.1 1.8 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family Eno-Rase_NADH_b PF12242.3 gi|433589690|ref|YP_007279186.1| - 0.0059 16.3 0.7 0.013 15.2 0.5 1.6 1 0 0 1 1 1 1 NAD(P)H binding domain of trans-2-enoyl-CoA reductase Polysacc_synt_2 PF02719.10 gi|433589690|ref|YP_007279186.1| - 0.0068 15.3 0.0 0.0082 15.0 0.0 1.2 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein Shikimate_DH PF01488.15 gi|433589690|ref|YP_007279186.1| - 0.016 15.3 0.1 0.042 13.9 0.0 1.8 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase DAO PF01266.19 gi|433589690|ref|YP_007279186.1| - 0.02 13.8 0.7 1 8.1 0.0 2.1 1 1 1 2 2 2 0 FAD dependent oxidoreductase Peptidase_M48 PF01435.13 gi|433589692|ref|YP_007279188.1| - 4.7e-21 75.3 0.1 1.9e-20 73.3 0.0 1.9 1 1 0 1 1 1 1 Peptidase family M48 Peptidase_MA_2 PF13485.1 gi|433589692|ref|YP_007279188.1| - 0.0014 18.7 0.0 0.0031 17.5 0.0 1.6 1 0 0 1 1 1 1 Peptidase MA superfamily Peptidase_M56 PF05569.6 gi|433589692|ref|YP_007279188.1| - 0.035 13.0 0.0 0.096 11.6 0.0 1.7 2 0 0 2 2 2 0 BlaR1 peptidase M56 PseudoU_synth_1 PF01416.15 gi|433589693|ref|YP_007279189.1| - 1.3e-22 80.2 0.0 7.2e-12 45.6 0.0 2.1 2 0 0 2 2 2 2 tRNA pseudouridine synthase DUF4013 PF13197.1 gi|433589694|ref|YP_007279190.1| - 0.023 14.0 1.6 0.028 13.7 1.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4013) Tiny_TM_bacill PF09680.5 gi|433589694|ref|YP_007279190.1| - 0.039 13.3 5.9 0.085 12.2 4.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (Tiny_TM_bacill) EVC2_like PF12297.3 gi|433589694|ref|YP_007279190.1| - 0.1 11.2 0.3 0.1 11.1 0.2 1.0 1 0 0 1 1 1 0 Ellis van Creveld protein 2 like protein IncA PF04156.9 gi|433589694|ref|YP_007279190.1| - 1.2 8.6 4.2 1.4 8.4 2.9 1.2 1 0 0 1 1 1 0 IncA protein PQQ_2 PF13360.1 gi|433589695|ref|YP_007279191.1| - 4.6e-38 131.0 21.8 2e-21 76.5 8.9 2.9 1 1 1 2 2 2 2 PQQ-like domain PQQ_3 PF13570.1 gi|433589695|ref|YP_007279191.1| - 1.1e-33 114.5 40.5 5.6e-07 29.6 0.6 8.9 8 1 0 8 8 8 8 PQQ-like domain PQQ PF01011.16 gi|433589695|ref|YP_007279191.1| - 2.6e-12 45.5 11.0 0.052 13.0 0.0 7.2 7 0 0 7 7 7 5 PQQ enzyme repeat Xan_ur_permease PF00860.15 gi|433589696|ref|YP_007279192.1| - 2.9e-85 286.0 45.0 3.7e-85 285.7 31.2 1.1 1 0 0 1 1 1 1 Permease family Pribosyltran PF00156.22 gi|433589697|ref|YP_007279193.1| - 2.1e-19 69.4 1.7 2.6e-19 69.1 1.2 1.1 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|433589697|ref|YP_007279193.1| - 0.0004 19.6 0.1 0.00065 18.9 0.1 1.3 1 1 0 1 1 1 1 Uracil phosphoribosyltransferase ASRT PF07100.6 gi|433589697|ref|YP_007279193.1| - 0.012 15.3 0.0 0.017 14.8 0.0 1.2 1 0 0 1 1 1 0 Anabaena sensory rhodopsin transducer PRTase_2 PF15609.1 gi|433589697|ref|YP_007279193.1| - 0.019 14.2 0.3 0.026 13.8 0.2 1.2 1 0 0 1 1 1 0 Phosphoribosyl transferase Peptidase_M3 PF01432.15 gi|433589698|ref|YP_007279194.1| - 1.2e-64 219.0 1.7 1.2e-64 219.0 1.2 2.4 2 1 0 2 2 2 2 Peptidase family M3 Peptidase_M3_N PF08439.5 gi|433589698|ref|YP_007279194.1| - 3.9e-21 74.8 2.2 4.3e-20 71.5 0.1 3.1 3 0 0 3 3 3 1 Oligopeptidase F DUF773 PF05600.7 gi|433589698|ref|YP_007279194.1| - 0.043 12.6 3.3 0.1 11.3 2.1 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF773) AAA PF00004.24 gi|433589699|ref|YP_007279195.1| - 7e-46 155.7 1.0 1.3e-45 154.8 0.1 1.9 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_2 PF07724.9 gi|433589699|ref|YP_007279195.1| - 1.4e-08 34.8 0.2 4e-08 33.3 0.0 1.9 2 0 0 2 2 1 1 AAA domain (Cdc48 subfamily) RuvB_N PF05496.7 gi|433589699|ref|YP_007279195.1| - 5.1e-07 28.9 0.0 1.4e-06 27.5 0.0 1.7 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_5 PF07728.9 gi|433589699|ref|YP_007279195.1| - 8.2e-07 28.8 0.3 5.2e-06 26.2 0.2 2.3 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_22 PF13401.1 gi|433589699|ref|YP_007279195.1| - 1.5e-06 28.4 1.1 8.3e-05 22.7 0.2 2.8 2 1 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|433589699|ref|YP_007279195.1| - 2.3e-06 27.7 3.1 8.9e-05 22.5 0.1 3.2 2 2 0 2 2 2 1 AAA ATPase domain AAA_17 PF13207.1 gi|433589699|ref|YP_007279195.1| - 1.5e-05 25.7 2.2 4.9e-05 24.1 0.0 2.4 2 1 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|433589699|ref|YP_007279195.1| - 7.8e-05 22.9 0.7 0.01 16.1 0.0 2.5 2 0 0 2 2 2 1 AAA domain DUF815 PF05673.8 gi|433589699|ref|YP_007279195.1| - 0.0001 21.3 0.0 0.0002 20.3 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_14 PF13173.1 gi|433589699|ref|YP_007279195.1| - 0.00017 21.4 0.0 0.00041 20.2 0.0 1.6 1 0 0 1 1 1 1 AAA domain TIP49 PF06068.8 gi|433589699|ref|YP_007279195.1| - 0.00063 18.5 0.0 0.0012 17.6 0.0 1.4 1 0 0 1 1 1 1 TIP49 C-terminus AAA_25 PF13481.1 gi|433589699|ref|YP_007279195.1| - 0.00083 18.8 7.5 0.032 13.6 0.0 3.3 2 1 1 3 3 3 1 AAA domain AAA_19 PF13245.1 gi|433589699|ref|YP_007279195.1| - 0.0012 18.5 0.1 0.0037 16.9 0.1 1.8 1 0 0 1 1 1 1 Part of AAA domain NACHT PF05729.7 gi|433589699|ref|YP_007279195.1| - 0.0013 18.4 0.1 0.048 13.3 0.0 2.4 2 0 0 2 2 2 1 NACHT domain Mg_chelatase PF01078.16 gi|433589699|ref|YP_007279195.1| - 0.0015 17.7 0.0 0.0035 16.5 0.0 1.5 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI IstB_IS21 PF01695.12 gi|433589699|ref|YP_007279195.1| - 0.0016 17.9 0.0 0.0033 16.8 0.0 1.6 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_28 PF13521.1 gi|433589699|ref|YP_007279195.1| - 0.0019 18.1 3.8 0.002 18.1 0.0 2.7 3 1 0 3 3 2 1 AAA domain AAA_33 PF13671.1 gi|433589699|ref|YP_007279195.1| - 0.0019 18.0 0.0 0.0071 16.2 0.0 1.9 1 1 0 1 1 1 1 AAA domain Sigma54_activat PF00158.21 gi|433589699|ref|YP_007279195.1| - 0.0023 17.4 0.1 0.082 12.3 0.0 2.4 2 1 0 2 2 2 1 Sigma-54 interaction domain Zeta_toxin PF06414.7 gi|433589699|ref|YP_007279195.1| - 0.0027 16.8 0.5 0.012 14.7 0.0 2.3 2 1 1 3 3 2 1 Zeta toxin AAA_24 PF13479.1 gi|433589699|ref|YP_007279195.1| - 0.0029 17.2 0.0 0.0074 15.8 0.0 1.8 1 0 0 1 1 1 1 AAA domain RNA_helicase PF00910.17 gi|433589699|ref|YP_007279195.1| - 0.0085 16.2 0.0 0.02 15.0 0.0 1.7 1 0 0 1 1 1 1 RNA helicase Arch_ATPase PF01637.13 gi|433589699|ref|YP_007279195.1| - 0.0094 15.6 1.2 0.06 13.0 0.0 2.7 3 1 0 3 3 2 1 Archaeal ATPase Sigma54_activ_2 PF14532.1 gi|433589699|ref|YP_007279195.1| - 0.02 14.9 0.0 0.056 13.4 0.0 1.8 1 1 0 1 1 1 0 Sigma-54 interaction domain NB-ARC PF00931.17 gi|433589699|ref|YP_007279195.1| - 0.023 13.5 0.0 0.046 12.5 0.0 1.6 1 0 0 1 1 1 0 NB-ARC domain CENP-Q PF13094.1 gi|433589699|ref|YP_007279195.1| - 0.023 14.7 4.3 0.053 13.5 2.2 2.1 2 0 0 2 2 2 0 CENP-Q, a CENPA-CAD centromere complex subunit Bac_DnaA PF00308.13 gi|433589699|ref|YP_007279195.1| - 0.027 14.1 0.2 0.57 9.7 0.0 2.4 3 0 0 3 3 2 0 Bacterial dnaA protein AAA_13 PF13166.1 gi|433589699|ref|YP_007279195.1| - 0.028 12.9 0.6 0.41 9.0 0.5 2.0 2 0 0 2 2 2 0 AAA domain AAA_3 PF07726.6 gi|433589699|ref|YP_007279195.1| - 0.03 13.9 0.0 0.053 13.1 0.0 1.6 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) KaiC PF06745.8 gi|433589699|ref|YP_007279195.1| - 0.03 13.4 4.1 0.16 11.0 0.0 2.7 2 1 1 3 3 3 0 KaiC Parvo_NS1 PF01057.12 gi|433589699|ref|YP_007279195.1| - 0.035 12.9 0.0 0.061 12.1 0.0 1.3 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 HupF_HypC PF01455.13 gi|433589699|ref|YP_007279195.1| - 0.042 13.8 0.8 0.21 11.5 0.0 2.6 2 1 1 3 3 2 0 HupF/HypC family AAA_23 PF13476.1 gi|433589699|ref|YP_007279195.1| - 0.077 13.3 0.8 3.1 8.0 0.0 2.5 2 0 0 2 2 2 0 AAA domain NTPase_1 PF03266.10 gi|433589699|ref|YP_007279195.1| - 0.09 12.4 2.5 0.31 10.7 0.1 2.8 3 1 0 3 3 2 0 NTPase ATP-gua_Ptrans PF00217.14 gi|433589699|ref|YP_007279195.1| - 0.095 11.9 0.2 0.16 11.2 0.1 1.3 1 0 0 1 1 1 0 ATP:guanido phosphotransferase, C-terminal catalytic domain ABC_tran PF00005.22 gi|433589699|ref|YP_007279195.1| - 0.12 12.6 1.4 0.34 11.2 0.0 2.3 2 2 0 2 2 2 0 ABC transporter DUF87 PF01935.12 gi|433589699|ref|YP_007279195.1| - 0.15 11.8 1.4 0.62 9.8 0.5 2.2 2 0 0 2 2 2 0 Domain of unknown function DUF87 Rootletin PF15035.1 gi|433589699|ref|YP_007279195.1| - 0.28 11.1 6.5 0.058 13.3 1.9 1.8 2 0 0 2 2 1 0 Ciliary rootlet component, centrosome cohesion BLOC1_2 PF10046.4 gi|433589699|ref|YP_007279195.1| - 0.54 10.4 3.4 0.41 10.8 0.4 2.2 2 0 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF904 PF06005.7 gi|433589699|ref|YP_007279195.1| - 0.58 10.4 4.4 0.5 10.6 1.8 1.8 2 0 0 2 2 1 0 Protein of unknown function (DUF904) VPS11_C PF12451.3 gi|433589699|ref|YP_007279195.1| - 1.6 8.6 4.2 0.63 9.9 0.2 2.5 3 0 0 3 3 1 0 Vacuolar protein sorting protein 11 C terminal DinB_2 PF12867.2 gi|433589699|ref|YP_007279195.1| - 2.8 8.2 6.8 19 5.5 1.0 3.4 3 1 0 3 3 3 0 DinB superfamily PvlArgDC PF01862.11 gi|433589700|ref|YP_007279196.1| - 1.1e-27 96.6 0.0 1.3e-27 96.4 0.0 1.0 1 0 0 1 1 1 1 Pyruvoyl-dependent arginine decarboxylase (PvlArgDC) ATP-synt_D PF01813.12 gi|433589703|ref|YP_007279199.1| - 1.3e-60 204.3 10.7 1.3e-60 204.3 7.4 1.3 2 0 0 2 2 2 1 ATP synthase subunit D RICH PF05062.7 gi|433589703|ref|YP_007279199.1| - 0.3 11.2 7.9 0.66 10.1 4.9 2.1 2 0 0 2 2 2 0 RICH domain bPH_2 PF03703.9 gi|433589705|ref|YP_007279201.1| - 1.3e-16 60.3 0.1 1.9e-16 59.8 0.0 1.3 1 0 0 1 1 1 1 Bacterial PH domain bPH_2 PF03703.9 gi|433589706|ref|YP_007279202.1| - 9.5e-37 124.8 0.1 8.8e-14 51.2 0.0 3.4 3 0 0 3 3 3 3 Bacterial PH domain bPH_4 PF06713.6 gi|433589706|ref|YP_007279202.1| - 0.017 14.9 0.0 4.2 7.3 0.0 2.6 2 0 0 2 2 2 0 Bacterial PH domain ABC_tran PF00005.22 gi|433589707|ref|YP_007279203.1| - 1.5e-35 122.4 0.0 2.2e-35 121.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.5 gi|433589707|ref|YP_007279203.1| - 5.3e-08 32.7 0.3 1.5e-07 31.3 0.2 1.8 1 0 0 1 1 1 1 TOBE domain AAA_21 PF13304.1 gi|433589707|ref|YP_007279203.1| - 7.2e-07 29.4 0.0 0.0036 17.3 0.0 2.1 2 0 0 2 2 2 2 AAA domain Rad17 PF03215.10 gi|433589707|ref|YP_007279203.1| - 0.0079 14.9 0.0 0.011 14.4 0.0 1.1 1 0 0 1 1 1 1 Rad17 cell cycle checkpoint protein AAA PF00004.24 gi|433589707|ref|YP_007279203.1| - 0.015 15.5 0.6 0.087 13.0 0.4 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|433589707|ref|YP_007279203.1| - 0.015 15.3 0.6 0.031 14.3 0.4 1.7 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|433589707|ref|YP_007279203.1| - 0.02 14.9 2.4 0.088 12.7 1.7 2.1 1 1 0 1 1 1 0 AAA ATPase domain PRK PF00485.13 gi|433589707|ref|YP_007279203.1| - 0.047 13.2 0.1 0.069 12.6 0.1 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family TOBE PF03459.12 gi|433589707|ref|YP_007279203.1| - 0.047 13.7 0.1 0.12 12.5 0.0 1.7 1 0 0 1 1 1 0 TOBE domain MobB PF03205.9 gi|433589707|ref|YP_007279203.1| - 0.049 13.3 0.1 0.095 12.4 0.1 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_15 PF13175.1 gi|433589707|ref|YP_007279203.1| - 0.065 12.2 0.0 0.38 9.7 0.0 1.8 2 0 0 2 2 2 0 AAA ATPase domain NB-ARC PF00931.17 gi|433589707|ref|YP_007279203.1| - 0.1 11.4 0.1 0.15 10.8 0.1 1.2 1 0 0 1 1 1 0 NB-ARC domain AAA_14 PF13173.1 gi|433589707|ref|YP_007279203.1| - 0.11 12.3 0.0 0.23 11.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|433589707|ref|YP_007279203.1| - 0.12 13.2 2.1 0.26 12.1 1.4 1.9 1 1 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|433589707|ref|YP_007279203.1| - 0.15 11.2 0.0 0.24 10.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 SMC_N PF02463.14 gi|433589707|ref|YP_007279203.1| - 0.21 10.8 0.2 8.2 5.5 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain BPD_transp_1 PF00528.17 gi|433589708|ref|YP_007279204.1| - 5.7e-10 39.0 19.8 1.1e-08 34.8 13.7 2.1 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|433589709|ref|YP_007279205.1| - 9e-15 54.6 14.2 9e-15 54.6 9.9 2.3 1 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component MpPF26 PF07666.6 gi|433589709|ref|YP_007279205.1| - 5.3 6.9 6.7 36 4.2 0.0 3.2 3 0 0 3 3 3 0 M penetrans paralogue family 26 SBP_bac_6 PF13343.1 gi|433589710|ref|YP_007279206.1| - 1.7e-21 76.6 0.0 2.2e-21 76.2 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.1 gi|433589710|ref|YP_007279206.1| - 1.1e-14 54.8 0.8 1.7e-14 54.2 0.6 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|433589710|ref|YP_007279206.1| - 1.7e-11 44.4 1.8 3.6e-10 40.0 1.0 2.2 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.1 gi|433589710|ref|YP_007279206.1| - 2.3e-11 43.7 0.0 4.1e-11 42.9 0.0 1.5 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein TAT_signal PF10518.4 gi|433589710|ref|YP_007279206.1| - 0.24 11.4 4.6 0.51 10.4 3.2 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence AMP-binding PF00501.23 gi|433589711|ref|YP_007279207.1| - 4.1e-91 305.4 1.0 4.7e-91 305.2 0.7 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|433589711|ref|YP_007279207.1| - 5.9e-16 59.1 0.1 1.3e-15 58.0 0.0 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain DUF3923 PF13061.1 gi|433589711|ref|YP_007279207.1| - 0.21 11.4 0.1 0.38 10.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3923) ATP-synt_ab PF00006.20 gi|433589712|ref|YP_007279208.1| - 1.5e-59 201.1 0.0 2.1e-59 200.6 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_C PF00306.22 gi|433589712|ref|YP_007279208.1| - 1.8e-17 63.8 0.3 3.8e-17 62.7 0.2 1.6 1 0 0 1 1 1 1 ATP synthase alpha/beta chain, C terminal domain ATP-synt_ab_N PF02874.18 gi|433589712|ref|YP_007279208.1| - 9.3e-14 51.4 1.6 2.4e-13 50.0 1.1 1.8 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain HAS-barrel PF09378.5 gi|433589712|ref|YP_007279208.1| - 0.00037 20.3 1.5 0.0018 18.1 0.6 2.3 2 0 0 2 2 2 1 HAS barrel domain ATP-synt_ab PF00006.20 gi|433589713|ref|YP_007279209.1| - 1.6e-94 315.4 0.0 2.1e-94 314.9 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_C PF00306.22 gi|433589713|ref|YP_007279209.1| - 5.1e-17 62.3 0.3 8.5e-17 61.6 0.2 1.4 1 0 0 1 1 1 1 ATP synthase alpha/beta chain, C terminal domain ATP-synt_ab_N PF02874.18 gi|433589713|ref|YP_007279209.1| - 6.6e-12 45.4 4.0 6.6e-12 45.4 2.7 2.3 2 0 0 2 2 2 1 ATP synthase alpha/beta family, beta-barrel domain AAA_22 PF13401.1 gi|433589713|ref|YP_007279209.1| - 0.059 13.5 0.2 0.17 12.0 0.0 1.8 2 0 0 2 2 2 0 AAA domain ATP-synt_F PF01990.12 gi|433589714|ref|YP_007279210.1| - 7.8e-18 64.6 0.1 9e-18 64.4 0.1 1.1 1 0 0 1 1 1 1 ATP synthase (F/14-kDa) subunit Pantoate_transf PF02548.10 gi|433589714|ref|YP_007279210.1| - 0.12 11.4 0.0 0.13 11.3 0.0 1.1 1 0 0 1 1 1 0 Ketopantoate hydroxymethyltransferase vATP-synt_AC39 PF01992.11 gi|433589715|ref|YP_007279211.1| - 1.1e-89 300.8 3.4 1.3e-89 300.6 2.3 1.0 1 0 0 1 1 1 1 ATP synthase (C/AC39) subunit DUF3209 PF11483.3 gi|433589715|ref|YP_007279211.1| - 0.078 13.3 0.8 0.18 12.1 0.2 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3209) vATP-synt_E PF01991.13 gi|433589716|ref|YP_007279212.1| - 1.3e-39 135.5 8.0 1.6e-39 135.2 5.6 1.1 1 0 0 1 1 1 1 ATP synthase (E/31 kDa) subunit Apolipoprotein PF01442.13 gi|433589716|ref|YP_007279212.1| - 9.5e-06 25.2 3.0 1e-05 25.1 2.1 1.2 1 0 0 1 1 1 1 Apolipoprotein A1/A4/E domain Peptidase_U32 PF01136.14 gi|433589716|ref|YP_007279212.1| - 0.11 11.3 2.1 0.17 10.7 1.4 1.2 1 0 0 1 1 1 0 Peptidase family U32 alpha-hel2 PF14456.1 gi|433589716|ref|YP_007279212.1| - 0.3 9.8 7.3 0.41 9.3 5.0 1.2 1 0 0 1 1 1 0 Alpha-helical domain 2 eIF-5a PF01287.15 gi|433589716|ref|YP_007279212.1| - 0.37 10.7 2.7 0.67 9.9 0.1 2.4 2 2 0 2 2 2 0 Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold OmpH PF03938.9 gi|433589716|ref|YP_007279212.1| - 0.76 9.6 7.5 1.2 9.0 5.2 1.4 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) DUF59 PF01883.14 gi|433589716|ref|YP_007279212.1| - 0.99 9.4 4.3 17 5.4 0.5 2.8 2 1 0 2 2 2 0 Domain of unknown function DUF59 HAUS5 PF14817.1 gi|433589716|ref|YP_007279212.1| - 1.2 7.5 9.9 1.5 7.2 6.9 1.0 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 5 TPX2 PF06886.6 gi|433589716|ref|YP_007279212.1| - 2.4 8.3 12.1 0.21 11.7 3.7 2.2 1 1 1 2 2 2 0 Targeting protein for Xklp2 (TPX2) ATP-synt_B PF00430.13 gi|433589716|ref|YP_007279212.1| - 2.6 7.8 18.8 1.1 9.0 7.8 2.1 1 1 1 2 2 2 0 ATP synthase B/B' CF(0) V-ATPase_G PF03179.10 gi|433589716|ref|YP_007279212.1| - 8.2 6.7 16.6 1 9.7 6.6 2.2 1 1 1 2 2 2 0 Vacuolar (H+)-ATPase G subunit ATP-synt_C PF00137.16 gi|433589717|ref|YP_007279213.1| - 8.2e-14 51.2 10.5 1e-13 50.9 7.3 1.1 1 0 0 1 1 1 1 ATP synthase subunit C ODV-E18 PF10717.4 gi|433589717|ref|YP_007279213.1| - 0.11 11.9 0.3 0.16 11.4 0.2 1.2 1 0 0 1 1 1 0 Occlusion-derived virus envelope protein ODV-E18 V_ATPase_I PF01496.14 gi|433589718|ref|YP_007279214.1| - 3.8e-69 233.4 24.5 5e-33 113.9 6.7 5.2 4 1 1 5 5 5 5 V-type ATPase 116kDa subunit family Tektin PF03148.9 gi|433589718|ref|YP_007279214.1| - 0.096 11.2 2.2 3.4 6.1 0.5 2.1 2 0 0 2 2 2 0 Tektin family Prefoldin_2 PF01920.15 gi|433589718|ref|YP_007279214.1| - 0.13 11.9 1.8 14 5.5 0.2 2.4 2 0 0 2 2 2 0 Prefoldin subunit CD20 PF04103.10 gi|433589718|ref|YP_007279214.1| - 1.9 8.4 9.7 5.5 6.8 3.2 2.7 2 1 0 2 2 2 0 CD20-like family APG6 PF04111.7 gi|433589718|ref|YP_007279214.1| - 2.4 7.1 5.3 1.3 8.0 0.5 2.1 2 0 0 2 2 2 0 Autophagy protein Apg6 DUF4140 PF13600.1 gi|433589718|ref|YP_007279214.1| - 6.1 7.3 11.7 0.86 10.0 0.2 2.8 3 0 0 3 3 3 0 N-terminal domain of unknown function (DUF4140) ATP-synt_B PF00430.13 gi|433589719|ref|YP_007279215.1| - 1.6e-07 31.2 20.4 1.9e-07 30.9 14.2 1.1 1 0 0 1 1 1 1 ATP synthase B/B' CF(0) HrpE PF06188.7 gi|433589719|ref|YP_007279215.1| - 0.0011 18.8 15.8 0.003 17.3 10.8 1.7 1 1 1 2 2 2 1 HrpE/YscL/FliH and V-type ATPase subunit E V-ATPase_G PF03179.10 gi|433589719|ref|YP_007279215.1| - 0.0014 18.9 22.9 0.042 14.1 6.3 2.1 1 1 1 2 2 2 2 Vacuolar (H+)-ATPase G subunit DivIVA PF05103.8 gi|433589719|ref|YP_007279215.1| - 0.023 14.7 17.3 0.37 10.8 7.5 2.0 1 1 1 2 2 2 0 DivIVA protein Apolipoprotein PF01442.13 gi|433589719|ref|YP_007279215.1| - 0.029 13.8 19.2 0.11 11.9 3.7 2.0 1 1 1 2 2 2 0 Apolipoprotein A1/A4/E domain LUC7 PF03194.10 gi|433589719|ref|YP_007279215.1| - 0.034 13.6 16.2 0.038 13.5 11.2 1.0 1 0 0 1 1 1 0 LUC7 N_terminus DUF883 PF05957.8 gi|433589719|ref|YP_007279215.1| - 0.041 14.2 18.3 1.8 9.0 5.6 2.2 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) DUF3552 PF12072.3 gi|433589719|ref|YP_007279215.1| - 0.16 11.1 27.7 1.1 8.4 19.2 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF3552) Muted PF14942.1 gi|433589719|ref|YP_007279215.1| - 0.24 11.2 13.4 0.36 10.6 9.3 1.3 1 0 0 1 1 1 0 Organelle biogenesis, Muted-like protein ApoLp-III PF07464.6 gi|433589719|ref|YP_007279215.1| - 0.28 11.2 11.1 0.36 10.8 7.7 1.1 1 0 0 1 1 1 0 Apolipophorin-III precursor (apoLp-III) DUF3435 PF11917.3 gi|433589719|ref|YP_007279215.1| - 0.39 9.3 10.2 0.48 9.0 7.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3435) Prominin PF05478.6 gi|433589719|ref|YP_007279215.1| - 0.5 7.8 2.0 0.51 7.8 1.4 1.1 1 0 0 1 1 1 0 Prominin DUF342 PF03961.8 gi|433589719|ref|YP_007279215.1| - 0.62 8.4 5.9 0.68 8.2 4.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF342) vATP-synt_E PF01991.13 gi|433589719|ref|YP_007279215.1| - 0.79 8.9 25.2 0.12 11.5 11.8 2.5 1 1 1 2 2 2 0 ATP synthase (E/31 kDa) subunit RRN3 PF05327.6 gi|433589719|ref|YP_007279215.1| - 0.8 7.7 8.7 0.96 7.4 6.0 1.0 1 0 0 1 1 1 0 RNA polymerase I specific transcription initiation factor RRN3 Atg14 PF10186.4 gi|433589719|ref|YP_007279215.1| - 0.83 8.5 9.2 1 8.2 6.4 1.1 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 ARD PF03079.9 gi|433589719|ref|YP_007279215.1| - 1.4 8.8 7.8 1.6 8.6 5.4 1.1 1 0 0 1 1 1 0 ARD/ARD' family hDGE_amylase PF14701.1 gi|433589719|ref|YP_007279215.1| - 1.9 7.2 5.7 2.1 7.1 4.0 1.0 1 0 0 1 1 1 0 glucanotransferase domain of human glycogen debranching enzyme Remorin_C PF03763.8 gi|433589719|ref|YP_007279215.1| - 2.2 7.8 17.9 0.32 10.5 3.6 2.2 1 1 1 2 2 2 0 Remorin, C-terminal region HSP70 PF00012.15 gi|433589719|ref|YP_007279215.1| - 3.6 5.3 13.0 4.3 5.1 9.0 1.0 1 0 0 1 1 1 0 Hsp70 protein Peptidase_M41 PF01434.13 gi|433589719|ref|YP_007279215.1| - 4 6.8 10.2 1.5 8.2 2.8 1.9 1 1 1 2 2 2 0 Peptidase family M41 YtxH PF12732.2 gi|433589719|ref|YP_007279215.1| - 4.2 7.7 11.6 2.5e+02 2.1 8.1 2.4 1 1 0 1 1 1 0 YtxH-like protein HAUS6_N PF14661.1 gi|433589719|ref|YP_007279215.1| - 4.3 6.6 10.5 5 6.3 7.3 1.1 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 6 N-terminus FUSC PF04632.7 gi|433589719|ref|YP_007279215.1| - 4.9 5.4 7.7 5.4 5.3 5.4 1.0 1 0 0 1 1 1 0 Fusaric acid resistance protein family APG6 PF04111.7 gi|433589719|ref|YP_007279215.1| - 5.5 5.9 16.9 6.1 5.7 11.7 1.1 1 0 0 1 1 1 0 Autophagy protein Apg6 DUF874 PF05917.6 gi|433589719|ref|YP_007279215.1| - 5.8 5.6 11.8 6.2 5.5 8.2 1.1 1 0 0 1 1 1 0 Helicobacter pylori protein of unknown function (DUF874) GBP_C PF02841.9 gi|433589719|ref|YP_007279215.1| - 6.4 5.8 17.6 7.5 5.6 12.2 1.0 1 0 0 1 1 1 0 Guanylate-binding protein, C-terminal domain Caudo_TAP PF02413.12 gi|433589719|ref|YP_007279215.1| - 6.7 6.9 15.2 16 5.6 5.2 2.8 1 1 2 3 3 3 0 Caudovirales tail fibre assembly protein PRKCSH-like PF12999.2 gi|433589719|ref|YP_007279215.1| - 9 5.8 8.0 10 5.6 1.2 2.0 1 1 1 2 2 2 0 Glucosidase II beta subunit-like Methyltransf_11 PF08241.7 gi|433589720|ref|YP_007279216.1| - 4e-25 88.1 0.0 5.9e-25 87.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|433589720|ref|YP_007279216.1| - 6.4e-20 71.2 0.0 7.7e-20 71.0 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|433589720|ref|YP_007279216.1| - 3.7e-19 68.9 0.0 5.1e-19 68.5 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|433589720|ref|YP_007279216.1| - 4.6e-19 68.6 0.0 6.9e-19 68.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|433589720|ref|YP_007279216.1| - 4.2e-18 65.3 0.0 9.7e-15 54.3 0.0 2.1 1 1 1 2 2 2 2 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.7 gi|433589720|ref|YP_007279216.1| - 3.9e-16 59.3 0.0 5.4e-16 58.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|433589720|ref|YP_007279216.1| - 6e-14 52.5 0.0 8.8e-14 52.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|433589720|ref|YP_007279216.1| - 4.6e-11 42.7 0.0 2.5e-10 40.3 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|433589720|ref|YP_007279216.1| - 1.1e-06 28.3 0.0 1.5e-06 27.9 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) RrnaAD PF00398.15 gi|433589720|ref|YP_007279216.1| - 2.4e-06 26.7 0.0 2.7e-06 26.6 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase MTS PF05175.9 gi|433589720|ref|YP_007279216.1| - 2.9e-06 26.7 0.0 1.2e-05 24.7 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_29 PF03141.11 gi|433589720|ref|YP_007279216.1| - 8.8e-06 24.3 0.0 1.1e-05 24.0 0.0 1.1 1 0 0 1 1 1 1 Putative S-adenosyl-L-methionine-dependent methyltransferase Methyltransf_9 PF08003.6 gi|433589720|ref|YP_007279216.1| - 2.8e-05 22.9 0.0 3.5e-05 22.6 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) MetW PF07021.7 gi|433589720|ref|YP_007279216.1| - 0.00018 20.9 0.0 0.00024 20.5 0.0 1.1 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW CMAS PF02353.15 gi|433589720|ref|YP_007279216.1| - 0.0008 18.5 0.0 0.0011 18.0 0.0 1.3 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase DREV PF05219.7 gi|433589720|ref|YP_007279216.1| - 0.0033 16.3 0.0 0.0044 15.9 0.0 1.3 1 1 0 1 1 1 1 DREV methyltransferase Methyltransf_PK PF05891.7 gi|433589720|ref|YP_007279216.1| - 0.0096 15.2 0.0 0.012 14.9 0.0 1.1 1 0 0 1 1 1 1 AdoMet dependent proline di-methyltransferase NodS PF05401.6 gi|433589720|ref|YP_007279216.1| - 0.032 13.6 0.0 0.041 13.2 0.0 1.2 1 0 0 1 1 1 0 Nodulation protein S (NodS) Methyltransf_8 PF05148.10 gi|433589720|ref|YP_007279216.1| - 0.048 13.2 0.0 0.34 10.4 0.0 2.0 1 1 0 1 1 1 0 Hypothetical methyltransferase Methyltransf_32 PF13679.1 gi|433589720|ref|YP_007279216.1| - 0.053 13.2 0.0 0.07 12.8 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain PrmA PF06325.8 gi|433589720|ref|YP_007279216.1| - 0.14 11.2 0.0 0.34 9.9 0.0 1.6 2 0 0 2 2 2 0 Ribosomal protein L11 methyltransferase (PrmA) DUF1628 PF07790.6 gi|433589721|ref|YP_007279217.1| - 6.6e-14 52.4 3.9 1.3e-13 51.4 2.4 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF1628) PG_binding_4 PF12229.3 gi|433589721|ref|YP_007279217.1| - 0.15 12.3 0.3 14 5.9 0.0 2.1 2 0 0 2 2 2 0 Putative peptidoglycan binding domain RskA PF10099.4 gi|433589721|ref|YP_007279217.1| - 0.56 9.9 4.5 0.24 11.1 0.5 1.9 2 0 0 2 2 2 0 Anti-sigma-K factor rskA BiPBP_C PF06832.7 gi|433589722|ref|YP_007279218.1| - 0.11 12.3 0.0 0.27 11.1 0.0 1.6 1 0 0 1 1 1 0 Penicillin-Binding Protein C-terminus Family HTH_24 PF13412.1 gi|433589723|ref|YP_007279219.1| - 0.021 14.2 0.0 0.04 13.3 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.5 gi|433589723|ref|YP_007279219.1| - 0.031 13.8 0.0 0.073 12.6 0.0 1.6 1 0 0 1 1 1 0 IclR helix-turn-helix domain DUF1510 PF07423.6 gi|433589724|ref|YP_007279220.1| - 0.026 13.8 0.8 0.053 12.8 0.5 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1510) Myco_19_kDa PF05481.7 gi|433589724|ref|YP_007279220.1| - 0.26 11.0 1.7 0.46 10.2 1.0 1.5 1 1 0 1 1 1 0 Mycobacterium 19 kDa lipoprotein antigen SpoIIIAH PF12685.2 gi|433589724|ref|YP_007279220.1| - 3.2 7.2 5.9 4.6 6.6 4.1 1.6 1 1 0 1 1 1 0 SpoIIIAH-like protein Radical_SAM PF04055.16 gi|433589725|ref|YP_007279221.1| - 1e-05 25.7 3.1 0.015 15.5 0.1 2.7 2 1 0 2 2 2 2 Radical SAM superfamily Fer4_14 PF13394.1 gi|433589725|ref|YP_007279221.1| - 0.0016 18.4 0.2 0.0032 17.5 0.1 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain HTH_29 PF13551.1 gi|433589726|ref|YP_007279222.1| - 3.2e-14 53.0 0.0 2.5e-13 50.1 0.0 2.4 2 1 1 3 3 3 1 Winged helix-turn helix DDE_3 PF13358.1 gi|433589726|ref|YP_007279222.1| - 1.6e-12 47.4 0.1 3.7e-12 46.2 0.0 1.6 2 0 0 2 2 2 1 DDE superfamily endonuclease HTH_32 PF13565.1 gi|433589726|ref|YP_007279222.1| - 1.9e-11 44.6 0.6 2.7e-10 40.8 0.0 2.6 2 0 0 2 2 2 1 Homeodomain-like domain HTH_23 PF13384.1 gi|433589726|ref|YP_007279222.1| - 9.7e-09 34.6 0.0 3.5e-08 32.8 0.0 2.0 2 0 0 2 2 2 1 Homeodomain-like domain HTH_33 PF13592.1 gi|433589726|ref|YP_007279222.1| - 2.9e-08 33.1 0.0 8.3e-07 28.4 0.0 2.4 2 0 0 2 2 2 1 Winged helix-turn helix HTH_28 PF13518.1 gi|433589726|ref|YP_007279222.1| - 6.6e-06 26.0 0.0 1.7e-05 24.7 0.0 1.7 2 0 0 2 2 1 1 Helix-turn-helix domain rve PF00665.21 gi|433589726|ref|YP_007279222.1| - 6.8e-05 22.9 0.0 0.00013 22.0 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain DDE_1 PF03184.14 gi|433589726|ref|YP_007279222.1| - 0.0006 19.0 0.0 0.00098 18.3 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_7 PF02796.10 gi|433589726|ref|YP_007279222.1| - 0.0015 18.3 0.1 0.0034 17.2 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase Sigma70_r4 PF04545.11 gi|433589726|ref|YP_007279222.1| - 0.0035 16.6 0.0 0.011 14.9 0.0 1.9 1 0 0 1 1 1 1 Sigma-70, region 4 DUF746 PF05344.6 gi|433589726|ref|YP_007279222.1| - 0.0099 15.3 0.0 0.029 13.8 0.0 1.8 1 0 0 1 1 1 1 Domain of Unknown Function (DUF746) LZ_Tnp_IS481 PF13011.1 gi|433589726|ref|YP_007279222.1| - 0.041 14.2 0.0 0.09 13.1 0.0 1.5 1 0 0 1 1 1 0 leucine-zipper of insertion element IS481 Sigma70_r4_2 PF08281.7 gi|433589726|ref|YP_007279222.1| - 0.048 13.1 0.1 0.17 11.3 0.0 1.9 2 0 0 2 2 2 0 Sigma-70, region 4 DUF373 PF04123.8 gi|433589727|ref|YP_007279223.1| - 1.4e-112 376.1 6.0 1.7e-112 375.8 4.1 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF373) polyprenyl_synt PF00348.12 gi|433589728|ref|YP_007279224.1| - 6.3e-53 179.2 0.0 9.1e-53 178.7 0.0 1.2 1 0 0 1 1 1 1 Polyprenyl synthetase DUF2067 PF09840.4 gi|433589728|ref|YP_007279224.1| - 0.043 13.3 0.4 5.1 6.5 0.0 2.2 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2067) TPR_16 PF13432.1 gi|433589728|ref|YP_007279224.1| - 2.9 8.6 11.5 0.4 11.4 1.3 3.0 3 0 0 3 3 3 0 Tetratricopeptide repeat ETF_alpha PF00766.14 gi|433589729|ref|YP_007279225.1| - 7.1e-37 124.9 0.1 1.6e-36 123.8 0.0 1.6 1 0 0 1 1 1 1 Electron transfer flavoprotein FAD-binding domain ETF PF01012.16 gi|433589729|ref|YP_007279225.1| - 5.1e-30 104.3 0.5 8e-30 103.7 0.3 1.3 1 0 0 1 1 1 1 Electron transfer flavoprotein domain ETF PF01012.16 gi|433589730|ref|YP_007279226.1| - 6.2e-32 110.5 1.4 9.2e-32 110.0 1.0 1.2 1 0 0 1 1 1 1 Electron transfer flavoprotein domain TRAM PF01938.15 gi|433589731|ref|YP_007279227.1| - 9.8e-08 31.6 0.2 1.3e-07 31.2 0.2 1.2 1 0 0 1 1 1 1 TRAM domain Antimicrobial21 PF14861.1 gi|433589731|ref|YP_007279227.1| - 0.043 13.2 0.2 0.087 12.3 0.2 1.5 1 0 0 1 1 1 0 Plant antimicrobial peptide LKAAEAR PF15478.1 gi|433589731|ref|YP_007279227.1| - 0.16 12.2 0.1 0.25 11.6 0.1 1.2 1 0 0 1 1 1 0 Family of unknown function with LKAAEAR motif Lactamase_B PF00753.22 gi|433589732|ref|YP_007279228.1| - 1.6e-25 89.9 4.0 2.5e-25 89.2 2.8 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|433589732|ref|YP_007279228.1| - 4e-07 29.7 0.2 7.6e-07 28.8 0.1 1.7 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|433589732|ref|YP_007279228.1| - 0.0046 16.6 0.0 0.044 13.4 0.0 2.2 2 1 0 2 2 2 1 Beta-lactamase superfamily domain NicO PF03824.11 gi|433589732|ref|YP_007279228.1| - 0.032 13.5 0.1 0.052 12.8 0.1 1.3 1 0 0 1 1 1 0 High-affinity nickel-transport protein TFX_C PF14601.1 gi|433589734|ref|YP_007279230.1| - 1.3e-30 104.9 0.0 2.2e-30 104.2 0.0 1.4 1 0 0 1 1 1 1 DNA_binding protein, TFX, C-term Sigma70_r4 PF04545.11 gi|433589734|ref|YP_007279230.1| - 2.9e-07 29.6 0.2 6.7e-07 28.5 0.1 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 GerE PF00196.14 gi|433589734|ref|YP_007279230.1| - 4.7e-05 22.6 0.1 7.4e-05 21.9 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_31 PF13560.1 gi|433589734|ref|YP_007279230.1| - 6.5e-05 23.0 4.0 0.00012 22.1 2.8 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|433589734|ref|YP_007279230.1| - 0.00028 20.2 0.1 0.00059 19.2 0.1 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_3 PF01381.17 gi|433589734|ref|YP_007279230.1| - 0.0003 20.5 0.1 0.00057 19.6 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix HTH_23 PF13384.1 gi|433589734|ref|YP_007279230.1| - 0.00051 19.6 0.1 0.0011 18.5 0.1 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_19 PF12844.2 gi|433589734|ref|YP_007279230.1| - 0.00053 19.9 0.0 0.0015 18.5 0.0 1.8 2 0 0 2 2 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|433589734|ref|YP_007279230.1| - 0.0021 17.7 0.1 0.0054 16.3 0.1 1.7 1 0 0 1 1 1 1 MarR family HTH_7 PF02796.10 gi|433589734|ref|YP_007279230.1| - 0.0034 17.2 0.0 0.0067 16.2 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase HTH_38 PF13936.1 gi|433589734|ref|YP_007279230.1| - 0.0046 16.4 0.0 0.0082 15.6 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_37 PF13744.1 gi|433589734|ref|YP_007279230.1| - 0.0083 15.9 0.0 0.017 14.9 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain RepB PF07506.6 gi|433589734|ref|YP_007279230.1| - 0.02 14.7 0.1 0.048 13.5 0.1 1.6 2 0 0 2 2 2 0 RepB plasmid partitioning protein HTH_28 PF13518.1 gi|433589734|ref|YP_007279230.1| - 0.021 14.8 0.1 0.041 13.8 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain KorB PF08535.5 gi|433589734|ref|YP_007279230.1| - 0.024 14.7 0.1 0.19 11.9 0.0 2.1 1 1 0 2 2 2 0 KorB domain HTH_24 PF13412.1 gi|433589734|ref|YP_007279230.1| - 0.086 12.2 0.0 0.16 11.4 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.1 gi|433589734|ref|YP_007279230.1| - 0.12 12.1 0.0 0.27 11.0 0.0 1.6 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain adh_short_C2 PF13561.1 gi|433589735|ref|YP_007279231.1| - 3.7e-22 79.2 0.0 4.4e-22 79.0 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.20 gi|433589735|ref|YP_007279231.1| - 2.4e-18 66.6 0.5 4.7e-18 65.6 0.3 1.4 2 0 0 2 2 2 1 short chain dehydrogenase KR PF08659.5 gi|433589735|ref|YP_007279231.1| - 1.8e-09 37.5 0.1 2.8e-09 36.8 0.1 1.3 1 0 0 1 1 1 1 KR domain Methyltransf_26 PF13659.1 gi|433589735|ref|YP_007279231.1| - 0.048 13.6 0.4 0.077 13.0 0.3 1.4 1 1 0 1 1 1 0 Methyltransferase domain Eno-Rase_NADH_b PF12242.3 gi|433589735|ref|YP_007279231.1| - 0.11 12.3 0.1 0.21 11.4 0.1 1.4 1 0 0 1 1 1 0 NAD(P)H binding domain of trans-2-enoyl-CoA reductase 7TM-7TMR_HD PF07698.6 gi|433589736|ref|YP_007279232.1| - 3.9 6.8 23.9 0.052 12.9 7.2 2.5 1 1 0 2 2 2 0 7TM receptor with intracellular HD hydrolase DDE_Tnp_IS1 PF03400.8 gi|433589737|ref|YP_007279233.1| - 0.096 12.7 0.5 0.19 11.8 0.0 1.7 2 0 0 2 2 2 0 IS1 transposase ThiF PF00899.16 gi|433589738|ref|YP_007279234.1| - 1.1e-44 151.5 0.1 1.9e-44 150.8 0.0 1.3 1 0 0 1 1 1 1 ThiF family MoeZ_MoeB PF05237.8 gi|433589738|ref|YP_007279234.1| - 4.2e-32 109.5 0.1 6.5e-32 108.9 0.0 1.3 1 0 0 1 1 1 1 MoeZ/MoeB domain Shikimate_DH PF01488.15 gi|433589738|ref|YP_007279234.1| - 0.0093 16.0 0.2 0.018 15.1 0.1 1.5 1 1 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase Saccharop_dh PF03435.13 gi|433589738|ref|YP_007279234.1| - 0.083 11.8 0.6 0.15 11.0 0.5 1.3 1 1 0 1 1 1 0 Saccharopine dehydrogenase DUF348 PF03990.9 gi|433589738|ref|YP_007279234.1| - 0.17 11.4 1.3 0.4 10.2 0.9 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF348) UPF0547 PF10571.4 gi|433589739|ref|YP_007279235.1| - 0.00058 19.4 1.4 0.00099 18.7 1.0 1.4 1 0 0 1 1 1 1 Uncharacterised protein family UPF0547 DZR PF12773.2 gi|433589739|ref|YP_007279235.1| - 0.0036 17.0 0.3 0.0039 16.9 0.2 1.2 1 0 0 1 1 1 1 Double zinc ribbon OrfB_Zn_ribbon PF07282.6 gi|433589739|ref|YP_007279235.1| - 0.016 14.8 2.0 0.038 13.6 1.4 1.6 1 1 0 1 1 1 0 Putative transposase DNA-binding domain zf-ribbon_3 PF13248.1 gi|433589739|ref|YP_007279235.1| - 0.016 14.3 4.2 0.024 13.8 2.9 1.3 1 0 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|433589739|ref|YP_007279235.1| - 0.017 14.6 4.4 0.026 14.0 3.0 1.3 1 0 0 1 1 1 0 zinc-ribbon domain DnaJ_CXXCXGXG PF00684.14 gi|433589739|ref|YP_007279235.1| - 0.052 13.5 1.5 0.063 13.3 1.0 1.2 1 0 0 1 1 1 0 DnaJ central domain A2L_zn_ribbon PF08792.5 gi|433589739|ref|YP_007279235.1| - 0.14 11.6 2.2 3 7.4 0.1 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain Cys_rich_CPCC PF14206.1 gi|433589739|ref|YP_007279235.1| - 0.15 11.6 2.2 0.25 10.9 1.5 1.4 1 0 0 1 1 1 0 Cysteine-rich CPCC zf-NADH-PPase PF09297.6 gi|433589739|ref|YP_007279235.1| - 0.83 9.2 3.7 2.3 7.7 0.1 2.5 3 0 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain DUF1610 PF07754.6 gi|433589739|ref|YP_007279235.1| - 7.2 6.8 6.7 14 5.8 0.5 3.0 3 0 0 3 3 3 0 Domain of unknown function (DUF1610) zf-ribbon_3 PF13248.1 gi|433589740|ref|YP_007279236.1| - 0.0011 18.0 0.9 0.18 11.0 0.1 2.2 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.2 gi|433589740|ref|YP_007279236.1| - 0.0066 16.2 0.9 0.011 15.5 0.6 1.4 1 1 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|433589740|ref|YP_007279236.1| - 0.0085 15.5 1.4 2.4 7.7 0.1 2.2 2 0 0 2 2 2 2 zinc-ribbon domain UPF0547 PF10571.4 gi|433589740|ref|YP_007279236.1| - 0.023 14.3 1.1 1.3 8.7 0.1 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 DCR PF14047.1 gi|433589740|ref|YP_007279236.1| - 0.043 14.0 0.4 0.059 13.6 0.3 1.3 1 1 0 1 1 1 0 Dppa2/4 conserved region XPA_N PF01286.13 gi|433589740|ref|YP_007279236.1| - 0.045 13.4 1.4 5.7 6.7 0.4 2.2 2 0 0 2 2 2 0 XPA protein N-terminal zf-HYPF PF07503.7 gi|433589740|ref|YP_007279236.1| - 0.059 12.8 2.5 0.69 9.3 0.2 2.3 2 0 0 2 2 2 0 HypF finger DUF4428 PF14471.1 gi|433589740|ref|YP_007279236.1| - 0.12 12.1 0.1 0.18 11.5 0.1 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4428) zf-IS66 PF13005.2 gi|433589740|ref|YP_007279236.1| - 0.13 12.2 1.0 2 8.4 0.1 2.2 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 A2L_zn_ribbon PF08792.5 gi|433589740|ref|YP_007279236.1| - 0.25 10.8 3.3 3.9 7.0 0.1 2.1 2 0 0 2 2 2 0 A2L zinc ribbon domain Zn-ribbon_8 PF09723.5 gi|433589740|ref|YP_007279236.1| - 0.34 10.9 5.2 2.9 7.9 3.6 2.0 1 1 0 1 1 1 0 Zinc ribbon domain Nudix_N_2 PF14803.1 gi|433589740|ref|YP_007279236.1| - 1.2 8.8 4.0 10 5.8 2.8 2.1 1 1 0 1 1 1 0 Nudix N-terminal zf-NADH-PPase PF09297.6 gi|433589740|ref|YP_007279236.1| - 2.3 7.7 5.2 9.3 5.8 0.5 2.5 3 0 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain zf-RING_3 PF14369.1 gi|433589740|ref|YP_007279236.1| - 2.4 8.2 5.9 22 5.1 3.9 2.1 1 1 0 1 1 1 0 zinc-finger UvrD-helicase PF00580.16 gi|433589741|ref|YP_007279237.1| - 7.6e-26 91.1 0.2 1.1e-11 44.6 0.0 2.4 2 0 0 2 2 2 2 UvrD/REP helicase N-terminal domain UvrD_C PF13361.1 gi|433589741|ref|YP_007279237.1| - 3.7e-13 49.6 0.2 1.3e-08 34.6 0.0 2.7 3 1 0 3 3 3 2 UvrD-like helicase C-terminal domain AAA_19 PF13245.1 gi|433589741|ref|YP_007279237.1| - 1.8e-09 37.2 0.3 5.5e-09 35.6 0.0 2.0 2 0 0 2 2 2 1 Part of AAA domain UvrD_C_2 PF13538.1 gi|433589741|ref|YP_007279237.1| - 5.2e-07 29.7 2.3 1.1e-05 25.5 0.4 3.1 2 1 0 2 2 2 1 UvrD-like helicase C-terminal domain AAA_30 PF13604.1 gi|433589741|ref|YP_007279237.1| - 3.1e-06 26.8 0.4 0.011 15.3 0.0 3.2 3 0 0 3 3 3 2 AAA domain Viral_helicase1 PF01443.13 gi|433589741|ref|YP_007279237.1| - 2.7e-05 23.8 0.1 3 7.3 0.0 4.2 5 0 0 5 5 5 2 Viral (Superfamily 1) RNA helicase Herpes_ori_bp PF02399.10 gi|433589741|ref|YP_007279237.1| - 0.00014 19.9 0.0 0.00022 19.3 0.0 1.2 1 0 0 1 1 1 1 Origin of replication binding protein AAA_11 PF13086.1 gi|433589741|ref|YP_007279237.1| - 0.00047 19.8 0.0 0.0013 18.3 0.0 1.7 2 0 0 2 2 2 1 AAA domain DEAD PF00270.24 gi|433589741|ref|YP_007279237.1| - 0.00094 18.7 0.0 0.98 8.8 0.0 2.7 2 0 0 2 2 2 2 DEAD/DEAH box helicase AAA_22 PF13401.1 gi|433589741|ref|YP_007279237.1| - 0.001 19.1 0.1 0.52 10.4 0.0 3.2 4 0 0 4 4 4 1 AAA domain AAA_25 PF13481.1 gi|433589741|ref|YP_007279237.1| - 0.041 13.2 0.4 0.24 10.7 0.0 2.4 3 0 0 3 3 3 0 AAA domain DUF2075 PF09848.4 gi|433589741|ref|YP_007279237.1| - 0.079 11.9 0.0 1.2 8.0 0.0 2.6 3 0 0 3 3 3 0 Uncharacterized conserved protein (DUF2075) Helicase_RecD PF05127.9 gi|433589741|ref|YP_007279237.1| - 0.1 12.2 0.0 0.31 10.6 0.0 1.8 2 0 0 2 2 2 0 Helicase DUF3638 PF12340.3 gi|433589741|ref|YP_007279237.1| - 0.16 10.9 0.0 0.46 9.4 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3638) DUF4131 PF13567.1 gi|433589743|ref|YP_007279239.1| - 0.023 14.1 0.1 0.024 14.0 0.1 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) DUF2157 PF09925.4 gi|433589743|ref|YP_007279239.1| - 0.11 12.0 2.8 0.12 11.9 1.1 1.6 1 1 0 1 1 1 0 Predicted membrane protein (DUF2157) PAS PF00989.19 gi|433589744|ref|YP_007279240.1| - 1.8e-29 101.8 0.0 2.2e-17 62.8 0.0 3.0 3 0 0 3 3 3 2 PAS fold PAS_9 PF13426.1 gi|433589744|ref|YP_007279240.1| - 4.4e-29 100.9 0.0 1e-15 57.9 0.0 3.0 3 0 0 3 3 3 2 PAS domain PAS_8 PF13188.1 gi|433589744|ref|YP_007279240.1| - 1.5e-22 78.5 0.0 8.3e-10 38.1 0.0 3.8 3 0 0 3 3 3 2 PAS domain PAS_4 PF08448.5 gi|433589744|ref|YP_007279240.1| - 3.8e-22 78.4 7.1 1.1e-14 54.4 0.1 3.4 3 1 0 3 3 3 2 PAS fold HATPase_c PF02518.21 gi|433589744|ref|YP_007279240.1| - 1.6e-19 69.6 0.0 3.4e-19 68.5 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|433589744|ref|YP_007279240.1| - 1.8e-09 37.4 0.4 5.1e-09 35.9 0.0 2.0 2 0 0 2 2 1 1 His Kinase A (phospho-acceptor) domain GAF_2 PF13185.1 gi|433589744|ref|YP_007279240.1| - 2e-08 34.8 0.7 1.2e-07 32.3 0.1 2.4 2 0 0 2 2 2 1 GAF domain GAF PF01590.21 gi|433589744|ref|YP_007279240.1| - 3.5e-08 33.6 0.1 8.5e-08 32.4 0.1 1.7 1 0 0 1 1 1 1 GAF domain GAF_3 PF13492.1 gi|433589744|ref|YP_007279240.1| - 5.9e-08 32.8 0.0 1.2e-07 31.9 0.0 1.5 1 0 0 1 1 1 1 GAF domain PAS_7 PF12860.2 gi|433589744|ref|YP_007279240.1| - 2.9e-06 27.2 0.0 0.00024 21.0 0.0 3.2 3 0 0 3 3 3 1 PAS fold PAS_3 PF08447.6 gi|433589744|ref|YP_007279240.1| - 3.5e-05 23.8 0.0 0.013 15.5 0.0 3.2 3 0 0 3 3 3 1 PAS fold PAS_10 PF13596.1 gi|433589744|ref|YP_007279240.1| - 0.057 13.6 0.0 0.3 11.3 0.0 2.1 2 0 0 2 2 2 0 PAS domain HATPase_c_3 PF13589.1 gi|433589744|ref|YP_007279240.1| - 0.072 12.7 0.0 0.13 11.9 0.0 1.3 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Lum_binding PF00677.12 gi|433589745|ref|YP_007279241.1| - 2.6e-34 116.9 0.0 1.5e-16 60.0 0.0 2.0 2 0 0 2 2 2 2 Lumazine binding domain PrsW-protease PF13367.1 gi|433589746|ref|YP_007279242.1| - 7.2e-40 136.2 15.4 7.2e-40 136.2 10.7 1.6 2 0 0 2 2 2 1 Protease prsW family SDF PF00375.13 gi|433589747|ref|YP_007279243.1| - 2.7e-118 395.1 28.3 3e-118 394.9 19.6 1.0 1 0 0 1 1 1 1 Sodium:dicarboxylate symporter family EMP70 PF02990.11 gi|433589747|ref|YP_007279243.1| - 3.3 6.0 6.4 0.76 8.1 0.5 2.0 2 0 0 2 2 2 0 Endomembrane protein 70 DUF1906 PF08924.6 gi|433589748|ref|YP_007279244.1| - 0.12 12.2 0.3 0.14 12.0 0.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1906) DUF402 PF04167.8 gi|433589749|ref|YP_007279245.1| - 1.5e-21 75.9 0.3 2.7e-21 75.1 0.2 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF402) NUDIX PF00293.23 gi|433589750|ref|YP_007279246.1| - 1.9e-12 46.9 0.3 2.2e-12 46.7 0.2 1.1 1 0 0 1 1 1 1 NUDIX domain SBF PF01758.11 gi|433589751|ref|YP_007279247.1| - 9.2e-42 142.5 16.4 1.5e-41 141.8 11.4 1.3 1 0 0 1 1 1 1 Sodium Bile acid symporter family DUF4137 PF13593.1 gi|433589751|ref|YP_007279247.1| - 4.7e-15 55.5 19.7 6e-15 55.1 13.6 1.1 1 0 0 1 1 1 1 SBF-like CPA transporter family (DUF4137) Mem_trans PF03547.13 gi|433589751|ref|YP_007279247.1| - 1.6 6.9 16.7 0.011 14.0 5.6 1.7 2 1 0 2 2 2 0 Membrane transport protein Zn-ribbon_8 PF09723.5 gi|433589752|ref|YP_007279248.1| - 1.6e-05 24.7 1.5 1.9e-05 24.4 1.0 1.2 1 0 0 1 1 1 1 Zinc ribbon domain Sgf11 PF08209.6 gi|433589752|ref|YP_007279248.1| - 0.0001 21.5 0.4 0.37 10.1 0.0 2.2 2 0 0 2 2 2 2 Sgf11 (transcriptional regulation protein) zinc_ribbon_2 PF13240.1 gi|433589752|ref|YP_007279248.1| - 0.001 18.4 0.0 0.0017 17.7 0.0 1.4 1 1 0 1 1 1 1 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|433589752|ref|YP_007279248.1| - 0.0033 16.5 3.9 0.25 10.6 0.4 2.2 2 0 0 2 2 2 2 zinc-ribbon domain Prok-RING_4 PF14447.1 gi|433589752|ref|YP_007279248.1| - 0.0054 16.2 0.3 0.0054 16.2 0.2 1.9 2 0 0 2 2 2 1 Prokaryotic RING finger family 4 Rad50_zn_hook PF04423.9 gi|433589752|ref|YP_007279248.1| - 0.007 15.8 0.7 0.021 14.2 0.0 1.9 2 0 0 2 2 2 1 Rad50 zinc hook motif DUF329 PF03884.9 gi|433589752|ref|YP_007279248.1| - 0.0094 15.4 1.2 2.8 7.5 0.1 2.1 2 0 0 2 2 2 2 Domain of unknown function (DUF329) DZR PF12773.2 gi|433589752|ref|YP_007279248.1| - 0.013 15.3 1.2 0.029 14.2 0.9 1.6 1 1 0 1 1 1 0 Double zinc ribbon HypA PF01155.14 gi|433589752|ref|YP_007279248.1| - 0.014 15.0 0.3 0.015 14.9 0.2 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-ISL3 PF14690.1 gi|433589752|ref|YP_007279248.1| - 0.019 14.9 0.8 5.5 7.1 0.0 2.1 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 UPF0547 PF10571.4 gi|433589752|ref|YP_007279248.1| - 0.021 14.5 6.0 0.19 11.4 3.6 2.1 1 1 1 2 2 2 0 Uncharacterised protein family UPF0547 zf-Di19 PF05605.7 gi|433589752|ref|YP_007279248.1| - 0.023 14.8 2.8 1.4 9.1 2.0 2.1 1 1 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding RNHCP PF12647.2 gi|433589752|ref|YP_007279248.1| - 0.027 14.2 0.3 0.027 14.2 0.2 1.1 1 0 0 1 1 1 0 RNHCP domain zf-C3HC4_3 PF13920.1 gi|433589752|ref|YP_007279248.1| - 0.031 13.9 2.7 0.16 11.6 1.9 1.8 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) zf-IS66 PF13005.2 gi|433589752|ref|YP_007279248.1| - 0.034 14.1 0.8 2.4 8.2 0.1 2.2 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 CpXC PF14353.1 gi|433589752|ref|YP_007279248.1| - 0.039 13.9 0.6 0.84 9.6 0.1 2.0 2 0 0 2 2 2 0 CpXC protein Rubredoxin PF00301.15 gi|433589752|ref|YP_007279248.1| - 0.057 13.3 1.3 5.2 7.0 0.1 2.2 2 0 0 2 2 2 0 Rubredoxin NMD3 PF04981.8 gi|433589752|ref|YP_007279248.1| - 0.064 12.3 0.0 0.069 12.2 0.0 1.0 1 0 0 1 1 1 0 NMD3 family zf-HYPF PF07503.7 gi|433589752|ref|YP_007279248.1| - 0.065 12.6 3.4 0.14 11.6 2.3 1.6 1 1 0 1 1 1 0 HypF finger DNA_ligase_ZBD PF03119.11 gi|433589752|ref|YP_007279248.1| - 0.1 12.3 4.2 0.97 9.1 0.4 2.2 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zf-C4_Topoisom PF01396.14 gi|433589752|ref|YP_007279248.1| - 0.11 12.0 1.4 2.9 7.4 0.1 2.1 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zinc-ribbons_6 PF07191.7 gi|433589752|ref|YP_007279248.1| - 0.12 12.1 1.7 1.3e+02 2.4 0.1 1.9 1 1 0 1 1 1 0 zinc-ribbons zf-C2H2 PF00096.21 gi|433589752|ref|YP_007279248.1| - 0.13 12.6 1.5 8 7.0 0.1 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf-RING_4 PF14570.1 gi|433589752|ref|YP_007279248.1| - 0.13 11.8 1.5 1.2 8.7 0.1 2.2 2 0 0 2 2 2 0 RING/Ubox like zinc-binding domain Nop10p PF04135.7 gi|433589752|ref|YP_007279248.1| - 0.13 11.9 0.9 2.5 7.9 0.4 2.2 1 1 0 1 1 1 0 Nucleolar RNA-binding protein, Nop10p family Elf1 PF05129.8 gi|433589752|ref|YP_007279248.1| - 0.16 11.6 0.6 0.25 11.0 0.4 1.4 1 1 0 1 1 1 0 Transcription elongation factor Elf1 like zf-dskA_traR PF01258.12 gi|433589752|ref|YP_007279248.1| - 0.17 11.6 2.1 3.5 7.4 0.1 2.3 2 0 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger DUF2256 PF10013.4 gi|433589752|ref|YP_007279248.1| - 0.29 10.9 1.3 2.3 8.0 0.1 2.0 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2256) Lar_restr_allev PF14354.1 gi|433589752|ref|YP_007279248.1| - 0.3 11.4 3.5 3.5 8.0 0.3 2.1 1 1 1 2 2 2 0 Restriction alleviation protein Lar zf-TFIIB PF13453.1 gi|433589752|ref|YP_007279248.1| - 0.46 9.7 4.0 1.5 8.1 2.7 1.8 1 1 1 2 2 2 0 Transcription factor zinc-finger zf-LITAF-like PF10601.4 gi|433589752|ref|YP_007279248.1| - 0.51 10.2 2.3 1.8 8.4 0.2 2.0 1 1 1 2 2 2 0 LITAF-like zinc ribbon domain TerY-C PF15616.1 gi|433589752|ref|YP_007279248.1| - 0.78 9.6 4.0 5.3 6.9 0.1 2.0 1 1 1 2 2 2 0 TerY-C metal binding domain TF_Zn_Ribbon PF08271.7 gi|433589752|ref|YP_007279248.1| - 1.5 8.2 6.1 10 5.5 0.4 2.2 1 1 0 1 1 1 0 TFIIB zinc-binding zf-H2C2_2 PF13465.1 gi|433589752|ref|YP_007279248.1| - 6.3 7.2 5.6 5.2 7.5 0.3 2.2 2 0 0 2 2 2 0 Zinc-finger double domain DUF1469 PF07332.6 gi|433589753|ref|YP_007279249.1| - 1.3 8.7 10.3 0.17 11.6 3.8 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1469) HTH_20 PF12840.2 gi|433589754|ref|YP_007279250.1| - 4e-08 32.9 0.1 6.8e-08 32.2 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|433589754|ref|YP_007279250.1| - 8.8e-07 28.5 0.0 1.3e-06 27.9 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.5 gi|433589754|ref|YP_007279250.1| - 3.7e-05 23.2 0.3 6.1e-05 22.5 0.2 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_11 PF08279.7 gi|433589754|ref|YP_007279250.1| - 0.0002 20.9 0.0 0.00041 19.9 0.0 1.5 1 0 0 1 1 1 1 HTH domain TrmB PF01978.14 gi|433589754|ref|YP_007279250.1| - 0.00023 20.8 0.0 0.0004 20.0 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|433589754|ref|YP_007279250.1| - 0.00024 20.4 0.0 0.00034 19.9 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|433589754|ref|YP_007279250.1| - 0.00042 19.9 0.0 0.00086 18.9 0.0 1.5 1 0 0 1 1 1 1 MarR family PadR PF03551.9 gi|433589754|ref|YP_007279250.1| - 0.0017 18.1 0.1 0.0043 16.7 0.0 1.7 2 0 0 2 2 2 1 Transcriptional regulator PadR-like family HTH_AsnC-type PF13404.1 gi|433589754|ref|YP_007279250.1| - 0.084 12.4 0.0 0.18 11.3 0.0 1.6 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain DUF2198 PF09964.4 gi|433589755|ref|YP_007279251.1| - 0.061 13.0 7.3 0.87 9.3 3.7 2.4 2 1 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2198) DctQ PF04290.7 gi|433589755|ref|YP_007279251.1| - 0.13 12.0 4.9 0.13 12.0 2.9 1.3 1 1 0 1 1 1 0 Tripartite ATP-independent periplasmic transporters, DctQ component Rax2 PF12768.2 gi|433589755|ref|YP_007279251.1| - 0.17 11.0 0.5 0.18 11.0 0.3 1.1 1 0 0 1 1 1 0 Cortical protein marker for cell polarity Aldo_ket_red PF00248.16 gi|433589756|ref|YP_007279252.1| - 5.8e-50 169.7 0.0 6.6e-50 169.5 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family PqqD PF05402.7 gi|433589756|ref|YP_007279252.1| - 0.063 13.2 0.4 0.19 11.7 0.3 1.9 1 0 0 1 1 1 0 Coenzyme PQQ synthesis protein D (PqqD) MtrF PF09472.5 gi|433589757|ref|YP_007279253.1| - 0.025 13.8 4.4 0.025 13.8 3.1 2.0 1 1 1 2 2 2 0 Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF) Asp-Al_Ex PF06826.7 gi|433589757|ref|YP_007279253.1| - 0.029 13.8 0.8 0.028 13.9 0.6 1.0 1 0 0 1 1 1 0 Predicted Permease Membrane Region DUF2142 PF09913.4 gi|433589757|ref|YP_007279253.1| - 0.055 12.1 1.5 0.067 11.8 1.0 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2142) DUF3561 PF12084.3 gi|433589757|ref|YP_007279253.1| - 0.095 12.5 3.7 0.22 11.3 0.4 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3561) UPF0016 PF01169.14 gi|433589757|ref|YP_007279253.1| - 0.11 12.6 4.3 0.76 9.9 2.0 2.0 1 1 1 2 2 2 0 Uncharacterized protein family UPF0016 SdpI PF13630.1 gi|433589757|ref|YP_007279253.1| - 0.65 9.7 3.0 0.94 9.2 2.1 1.2 1 0 0 1 1 1 0 SdpI/YhfL protein family DUF2929 PF11151.3 gi|433589757|ref|YP_007279253.1| - 0.69 10.0 3.8 0.32 11.1 0.9 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF2929) DUF3040 PF11239.3 gi|433589757|ref|YP_007279253.1| - 1.8 8.6 9.9 2 8.4 4.9 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF3040) Hexapep PF00132.19 gi|433589758|ref|YP_007279254.1| - 1.2e-08 34.0 4.6 0.0031 16.9 0.2 3.7 3 0 0 3 3 3 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|433589758|ref|YP_007279254.1| - 0.062 12.8 7.6 1.3 8.6 0.1 3.1 3 1 0 3 3 3 0 Hexapeptide repeat of succinyl-transferase DUF1100 PF06500.6 gi|433589758|ref|YP_007279254.1| - 0.12 10.9 0.1 0.16 10.4 0.0 1.1 1 0 0 1 1 1 0 Alpha/beta hydrolase of unknown function (DUF1100) DZR PF12773.2 gi|433589759|ref|YP_007279255.1| - 0.0048 16.6 0.4 0.0068 16.1 0.3 1.3 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|433589759|ref|YP_007279255.1| - 0.013 14.9 6.6 0.041 13.3 4.6 1.8 1 1 0 1 1 1 0 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|433589759|ref|YP_007279255.1| - 0.018 14.2 7.4 0.17 11.1 5.1 2.1 1 1 0 1 1 1 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|433589759|ref|YP_007279255.1| - 0.28 11.1 2.3 0.42 10.5 0.4 2.0 1 1 1 2 2 2 0 Zinc ribbon domain TraB PF01963.12 gi|433589761|ref|YP_007279257.1| - 1.7e-05 24.3 1.0 0.037 13.4 0.1 2.8 2 1 1 3 3 3 2 TraB family Cpn60_TCP1 PF00118.19 gi|433589762|ref|YP_007279258.1| - 3.4e-152 507.4 6.0 3.8e-152 507.3 4.2 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family HTH_29 PF13551.1 gi|433589763|ref|YP_007279259.1| - 3.2e-14 53.0 0.0 2.5e-13 50.1 0.0 2.4 2 1 1 3 3 3 1 Winged helix-turn helix DDE_3 PF13358.1 gi|433589763|ref|YP_007279259.1| - 1.6e-12 47.4 0.1 3.7e-12 46.2 0.0 1.6 2 0 0 2 2 2 1 DDE superfamily endonuclease HTH_32 PF13565.1 gi|433589763|ref|YP_007279259.1| - 1.9e-11 44.6 0.6 2.7e-10 40.8 0.0 2.6 2 0 0 2 2 2 1 Homeodomain-like domain HTH_23 PF13384.1 gi|433589763|ref|YP_007279259.1| - 9.7e-09 34.6 0.0 3.5e-08 32.8 0.0 2.0 2 0 0 2 2 2 1 Homeodomain-like domain HTH_33 PF13592.1 gi|433589763|ref|YP_007279259.1| - 2.9e-08 33.1 0.0 8.3e-07 28.4 0.0 2.4 2 0 0 2 2 2 1 Winged helix-turn helix HTH_28 PF13518.1 gi|433589763|ref|YP_007279259.1| - 6.6e-06 26.0 0.0 1.7e-05 24.7 0.0 1.7 2 0 0 2 2 1 1 Helix-turn-helix domain rve PF00665.21 gi|433589763|ref|YP_007279259.1| - 6.8e-05 22.9 0.0 0.00013 22.0 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain DDE_1 PF03184.14 gi|433589763|ref|YP_007279259.1| - 0.0006 19.0 0.0 0.00098 18.3 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_7 PF02796.10 gi|433589763|ref|YP_007279259.1| - 0.0015 18.3 0.1 0.0034 17.2 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase Sigma70_r4 PF04545.11 gi|433589763|ref|YP_007279259.1| - 0.0035 16.6 0.0 0.011 14.9 0.0 1.9 1 0 0 1 1 1 1 Sigma-70, region 4 DUF746 PF05344.6 gi|433589763|ref|YP_007279259.1| - 0.0099 15.3 0.0 0.029 13.8 0.0 1.8 1 0 0 1 1 1 1 Domain of Unknown Function (DUF746) LZ_Tnp_IS481 PF13011.1 gi|433589763|ref|YP_007279259.1| - 0.041 14.2 0.0 0.09 13.1 0.0 1.5 1 0 0 1 1 1 0 leucine-zipper of insertion element IS481 Sigma70_r4_2 PF08281.7 gi|433589763|ref|YP_007279259.1| - 0.048 13.1 0.1 0.17 11.3 0.0 1.9 2 0 0 2 2 2 0 Sigma-70, region 4 AsnC_trans_reg PF01037.16 gi|433589764|ref|YP_007279260.1| - 1.8e-12 46.8 0.0 3.1e-12 45.9 0.0 1.4 1 0 0 1 1 1 1 AsnC family HTH_24 PF13412.1 gi|433589764|ref|YP_007279260.1| - 3.6e-11 42.2 0.0 7.8e-11 41.1 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|433589764|ref|YP_007279260.1| - 1.9e-08 33.8 0.2 3.6e-08 32.9 0.1 1.5 2 0 0 2 2 1 1 Bacterial regulatory protein, arsR family HTH_AsnC-type PF13404.1 gi|433589764|ref|YP_007279260.1| - 1.1e-07 31.2 0.2 1.8e-07 30.5 0.1 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_20 PF12840.2 gi|433589764|ref|YP_007279260.1| - 1.5e-07 31.1 0.1 2.9e-07 30.1 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|433589764|ref|YP_007279260.1| - 7.9e-07 28.6 0.0 1.6e-06 27.6 0.0 1.5 1 0 0 1 1 1 1 HTH domain HTH_DeoR PF08220.7 gi|433589764|ref|YP_007279260.1| - 1.2e-05 24.7 0.0 2.4e-05 23.7 0.0 1.5 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain TrmB PF01978.14 gi|433589764|ref|YP_007279260.1| - 1.4e-05 24.6 0.2 2.6e-05 23.8 0.0 1.5 2 0 0 2 2 1 1 Sugar-specific transcriptional regulator TrmB HTH_28 PF13518.1 gi|433589764|ref|YP_007279260.1| - 2.5e-05 24.1 0.0 4.2e-05 23.4 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|433589764|ref|YP_007279260.1| - 0.00032 20.3 0.0 0.00055 19.5 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|433589764|ref|YP_007279260.1| - 0.0004 19.9 0.1 0.00069 19.1 0.1 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain GntR PF00392.16 gi|433589764|ref|YP_007279260.1| - 0.00043 19.6 0.1 0.00083 18.7 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_10 PF04967.7 gi|433589764|ref|YP_007279260.1| - 0.00073 19.0 0.0 0.0016 17.9 0.0 1.5 1 0 0 1 1 1 1 HTH DNA binding domain MarR PF01047.17 gi|433589764|ref|YP_007279260.1| - 0.0018 17.9 0.0 0.0036 16.9 0.0 1.5 1 0 0 1 1 1 1 MarR family Fe_dep_repress PF01325.14 gi|433589764|ref|YP_007279260.1| - 0.003 17.4 0.0 0.0056 16.5 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_23 PF13384.1 gi|433589764|ref|YP_007279260.1| - 0.0047 16.5 0.0 0.0077 15.8 0.0 1.3 1 0 0 1 1 1 1 Homeodomain-like domain HTH_Crp_2 PF13545.1 gi|433589764|ref|YP_007279260.1| - 0.01 15.5 0.0 0.017 14.9 0.0 1.3 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Mga PF05043.8 gi|433589764|ref|YP_007279260.1| - 0.015 15.5 0.0 0.041 14.1 0.0 1.7 2 0 0 2 2 2 0 Mga helix-turn-helix domain HTH_27 PF13463.1 gi|433589764|ref|YP_007279260.1| - 0.016 15.5 0.0 0.048 13.9 0.0 1.9 2 0 0 2 2 1 0 Winged helix DNA-binding domain HTH_34 PF13601.1 gi|433589764|ref|YP_007279260.1| - 0.016 15.1 0.2 0.039 13.9 0.0 1.6 2 0 0 2 2 1 0 Winged helix DNA-binding domain HTH_36 PF13730.1 gi|433589764|ref|YP_007279260.1| - 0.02 15.0 0.0 0.029 14.4 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.1 gi|433589764|ref|YP_007279260.1| - 0.022 13.9 0.2 0.11 11.6 0.0 2.1 3 0 0 3 3 3 0 Helix-turn-helix domain of transposase family ISL3 HTH_38 PF13936.1 gi|433589764|ref|YP_007279260.1| - 0.035 13.6 0.0 0.061 12.8 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_41 PF14502.1 gi|433589764|ref|YP_007279260.1| - 0.037 13.6 0.0 0.074 12.6 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Rrf2 PF02082.15 gi|433589764|ref|YP_007279260.1| - 0.038 14.1 0.0 0.075 13.1 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator DUF742 PF05331.6 gi|433589764|ref|YP_007279260.1| - 0.053 13.1 0.0 0.2 11.2 0.0 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF742) HTH_40 PF14493.1 gi|433589764|ref|YP_007279260.1| - 0.055 13.6 0.0 0.092 12.9 0.0 1.6 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_7 PF02796.10 gi|433589764|ref|YP_007279260.1| - 0.058 13.2 0.0 0.19 11.6 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase HTH_1 PF00126.22 gi|433589764|ref|YP_007279260.1| - 0.076 12.7 0.0 0.16 11.6 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family FeoC PF09012.5 gi|433589764|ref|YP_007279260.1| - 0.094 12.4 0.0 0.16 11.6 0.0 1.4 1 0 0 1 1 1 0 FeoC like transcriptional regulator GerE PF00196.14 gi|433589764|ref|YP_007279260.1| - 0.13 11.6 0.0 0.24 10.7 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family Sigma70_r4_2 PF08281.7 gi|433589764|ref|YP_007279260.1| - 0.15 11.5 0.0 0.27 10.7 0.0 1.3 1 0 0 1 1 1 0 Sigma-70, region 4 Gln-synt_C PF00120.19 gi|433589765|ref|YP_007279261.1| - 6.1e-103 343.4 0.0 4.2e-102 340.7 0.0 1.9 2 0 0 2 2 2 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.14 gi|433589765|ref|YP_007279261.1| - 3e-31 106.8 0.1 5.7e-31 105.9 0.0 1.5 1 0 0 1 1 1 1 Glutamine synthetase, beta-Grasp domain Hexapep PF00132.19 gi|433589766|ref|YP_007279262.1| - 6.1e-15 53.9 7.9 8.9e-07 28.1 1.1 4.0 2 1 0 3 3 3 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|433589766|ref|YP_007279262.1| - 2.6e-11 42.8 1.9 4.9e-08 32.3 0.1 2.8 3 0 0 3 3 3 2 Hexapeptide repeat of succinyl-transferase IncA PF04156.9 gi|433589767|ref|YP_007279263.1| - 0.14 11.7 2.5 0.087 12.4 0.6 1.5 2 0 0 2 2 2 0 IncA protein DUF3040 PF11239.3 gi|433589767|ref|YP_007279263.1| - 2.7 8.1 5.7 0.34 10.9 0.8 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3040) TAT_signal PF10518.4 gi|433589768|ref|YP_007279264.1| - 0.2 11.7 4.0 0.58 10.3 2.8 1.8 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence GCV_T PF01571.16 gi|433589769|ref|YP_007279265.1| - 1.5e-38 132.3 0.0 2e-38 131.8 0.0 1.2 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain GCV_T_C PF08669.6 gi|433589769|ref|YP_007279265.1| - 6.8e-19 67.6 0.1 1.5e-18 66.6 0.1 1.6 1 0 0 1 1 1 1 Glycine cleavage T-protein C-terminal barrel domain HTH_20 PF12840.2 gi|433589770|ref|YP_007279266.1| - 0.00043 20.0 0.1 0.00052 19.7 0.1 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|433589770|ref|YP_007279266.1| - 0.0069 16.0 0.0 0.0091 15.6 0.0 1.1 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB GntR PF00392.16 gi|433589770|ref|YP_007279266.1| - 0.016 14.6 0.0 0.021 14.2 0.0 1.2 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family AAA_27 PF13514.1 gi|433589770|ref|YP_007279266.1| - 0.042 11.5 0.5 0.043 11.5 0.3 1.0 1 0 0 1 1 1 0 AAA domain FANCI_S1-cap PF14674.1 gi|433589770|ref|YP_007279266.1| - 0.12 12.4 0.1 0.2 11.7 0.1 1.3 1 0 0 1 1 1 0 FANCI solenoid 1 cap MarR_2 PF12802.2 gi|433589770|ref|YP_007279266.1| - 0.12 12.0 0.1 0.15 11.7 0.1 1.1 1 0 0 1 1 1 0 MarR family HypA PF01155.14 gi|433589771|ref|YP_007279267.1| - 0.082 12.6 1.3 2.7 7.7 0.1 2.2 2 0 0 2 2 2 0 Hydrogenase expression/synthesis hypA family Rubredoxin PF00301.15 gi|433589771|ref|YP_007279267.1| - 0.32 10.8 4.5 0.49 10.3 0.2 3.2 3 0 0 3 3 3 0 Rubredoxin zf-FPG_IleRS PF06827.9 gi|433589771|ref|YP_007279267.1| - 3.6 7.3 5.7 5.5 6.7 0.2 3.0 3 0 0 3 3 3 0 Zinc finger found in FPG and IleRS TctB PF07331.6 gi|433589773|ref|YP_007279269.1| - 0.033 13.8 0.3 0.039 13.6 0.2 1.0 1 0 0 1 1 1 0 Tripartite tricarboxylate transporter TctB family YhhN PF07947.9 gi|433589773|ref|YP_007279269.1| - 0.05 12.9 0.4 0.052 12.9 0.3 1.0 1 0 0 1 1 1 0 YhhN-like protein CbtA PF09490.5 gi|433589773|ref|YP_007279269.1| - 0.096 11.9 0.5 0.1 11.8 0.3 1.0 1 0 0 1 1 1 0 Probable cobalt transporter subunit (CbtA) DUF1206 PF06724.6 gi|433589773|ref|YP_007279269.1| - 2.8 7.7 5.5 0.91 9.3 0.2 2.0 1 1 1 2 2 2 0 Domain of Unknown Function (DUF1206) SDF PF00375.13 gi|433589774|ref|YP_007279270.1| - 7.3e-108 360.7 39.3 8.3e-108 360.6 27.2 1.0 1 0 0 1 1 1 1 Sodium:dicarboxylate symporter family EMP70 PF02990.11 gi|433589774|ref|YP_007279270.1| - 0.65 8.3 7.0 0.5 8.7 1.5 2.2 2 0 0 2 2 2 0 Endomembrane protein 70 Chlor_dismutase PF06778.7 gi|433589775|ref|YP_007279271.1| - 2.8e-49 167.4 0.0 4.9e-49 166.6 0.0 1.4 1 0 0 1 1 1 1 Chlorite dismutase ABM PF03992.11 gi|433589775|ref|YP_007279271.1| - 2.2e-09 37.2 0.1 2.2e-09 37.2 0.0 4.1 4 1 1 5 5 5 1 Antibiotic biosynthesis monooxygenase GCV_T PF01571.16 gi|433589775|ref|YP_007279271.1| - 0.051 12.9 0.7 5.4 6.3 0.0 3.0 3 0 0 3 3 3 0 Aminomethyltransferase folate-binding domain PadR PF03551.9 gi|433589776|ref|YP_007279272.1| - 1.5e-22 79.1 0.1 2.4e-22 78.4 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family TrmB PF01978.14 gi|433589776|ref|YP_007279272.1| - 0.081 12.6 0.0 0.2 11.3 0.0 1.8 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.1 gi|433589776|ref|YP_007279272.1| - 0.13 12.6 0.0 0.3 11.4 0.0 1.7 1 1 0 1 1 1 0 Winged helix DNA-binding domain Peptidase_M50 PF02163.17 gi|433589777|ref|YP_007279273.1| - 3.5e-28 97.8 0.0 9.1e-28 96.5 0.0 1.7 2 1 0 2 2 2 1 Peptidase family M50 PDZ_2 PF13180.1 gi|433589777|ref|YP_007279273.1| - 5.6e-17 61.4 2.7 2.4e-08 33.7 0.1 3.6 2 1 1 4 4 4 3 PDZ domain PDZ PF00595.19 gi|433589777|ref|YP_007279273.1| - 2.6e-09 37.1 0.8 5.2e-07 29.7 0.1 2.8 3 0 0 3 3 3 2 PDZ domain (Also known as DHR or GLGF) Tricorn_PDZ PF14685.1 gi|433589777|ref|YP_007279273.1| - 1.6e-08 34.2 1.2 0.0044 16.7 0.1 3.4 2 1 1 3 3 3 2 Tricorn protease PDZ domain tRNA-synt_1f PF01921.13 gi|433589778|ref|YP_007279274.1| - 3.4e-100 335.2 0.0 4.9e-100 334.7 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (K) tRNA-synt_1g PF09334.6 gi|433589778|ref|YP_007279274.1| - 3.4e-08 32.5 0.0 3.5e-06 25.9 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1e PF01406.14 gi|433589778|ref|YP_007279274.1| - 0.0017 17.5 0.0 0.0061 15.7 0.0 1.8 3 0 0 3 3 3 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1b PF00579.20 gi|433589778|ref|YP_007279274.1| - 0.052 12.6 0.0 6.4 5.8 0.0 2.2 2 0 0 2 2 2 0 tRNA synthetases class I (W and Y) AA_kinase PF00696.23 gi|433589779|ref|YP_007279275.1| - 2.8e-28 99.0 3.7 3.4e-28 98.8 2.5 1.1 1 0 0 1 1 1 1 Amino acid kinase family PGA_cap PF09587.5 gi|433589780|ref|YP_007279276.1| - 6.6e-64 215.6 0.0 7.8e-64 215.4 0.0 1.0 1 0 0 1 1 1 1 Bacterial capsule synthesis protein PGA_cap E1_dh PF00676.15 gi|433589780|ref|YP_007279276.1| - 0.15 10.7 0.4 0.49 9.0 0.0 1.8 2 0 0 2 2 2 0 Dehydrogenase E1 component MoaE PF02391.12 gi|433589781|ref|YP_007279277.1| - 8.3e-21 73.9 0.2 1.4e-20 73.2 0.1 1.4 1 0 0 1 1 1 1 MoaE protein Peptidase_M50 PF02163.17 gi|433589783|ref|YP_007279279.1| - 8.5e-18 64.0 4.8 6.1e-17 61.2 1.7 2.8 2 1 0 2 2 2 1 Peptidase family M50 AIRS PF00586.19 gi|433589784|ref|YP_007279280.1| - 2.2e-16 59.8 1.9 6.7e-16 58.3 1.3 1.8 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain AIRS_C PF02769.17 gi|433589784|ref|YP_007279280.1| - 1.1e-10 41.7 0.0 1.7e-10 41.0 0.0 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain Ribosomal_S19e PF01090.14 gi|433589785|ref|YP_007279281.1| - 1.9e-45 153.7 0.0 2.1e-45 153.5 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S19e Rrf2 PF02082.15 gi|433589785|ref|YP_007279281.1| - 0.015 15.4 0.0 0.046 13.8 0.0 1.7 2 0 0 2 2 2 0 Transcriptional regulator TrmB PF01978.14 gi|433589785|ref|YP_007279281.1| - 0.02 14.6 0.1 0.65 9.7 0.0 2.5 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB Met_synt_B12 PF02965.12 gi|433589785|ref|YP_007279281.1| - 0.029 13.5 0.0 0.057 12.6 0.0 1.7 2 0 0 2 2 2 0 Vitamin B12 dependent methionine synthase, activation domain HTH_45 PF14947.1 gi|433589785|ref|YP_007279281.1| - 0.052 13.3 0.0 0.086 12.6 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_12 PF08461.5 gi|433589785|ref|YP_007279281.1| - 0.13 11.9 1.2 0.22 11.2 0.2 1.9 2 0 0 2 2 2 0 Ribonuclease R winged-helix domain dsDNA_bind PF01984.15 gi|433589786|ref|YP_007279282.1| - 1.1e-29 102.5 14.0 1.3e-29 102.2 9.7 1.0 1 0 0 1 1 1 1 Double-stranded DNA-binding domain PCI PF01399.22 gi|433589786|ref|YP_007279282.1| - 0.01 16.1 0.1 0.015 15.5 0.1 1.7 1 1 0 1 1 1 0 PCI domain Peptidase_M3_N PF08439.5 gi|433589786|ref|YP_007279282.1| - 1 9.4 3.3 32 4.6 0.9 2.5 2 0 0 2 2 2 0 Oligopeptidase F Hid1 PF12722.2 gi|433589786|ref|YP_007279282.1| - 1.6 6.3 5.3 1.7 6.1 3.7 1.0 1 0 0 1 1 1 0 High-temperature-induced dauer-formation protein DUF217 PF02697.9 gi|433589786|ref|YP_007279282.1| - 2.6 8.3 5.7 3.2 8.0 0.1 2.3 2 1 0 2 2 2 0 Uncharacterized ACR, COG1753 APC_CDC26 PF10471.4 gi|433589786|ref|YP_007279282.1| - 6.5 7.5 13.3 6.7 7.5 6.7 2.0 1 1 1 2 2 2 0 Anaphase-promoting complex APC subunit 1 Asn_synthase PF00733.16 gi|433589787|ref|YP_007279283.1| - 6e-05 22.6 0.1 8.9e-05 22.1 0.0 1.4 1 1 0 1 1 1 1 Asparagine synthase QueC PF06508.8 gi|433589787|ref|YP_007279283.1| - 0.042 13.1 0.0 0.071 12.3 0.0 1.3 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC ATP_bind_4 PF01902.12 gi|433589787|ref|YP_007279283.1| - 0.05 12.9 0.0 0.069 12.5 0.0 1.2 1 0 0 1 1 1 0 ATP-binding region tRNA-synt_His PF13393.1 gi|433589788|ref|YP_007279284.1| - 1.4e-52 178.7 0.1 1.8e-52 178.3 0.0 1.1 1 0 0 1 1 1 1 Histidyl-tRNA synthetase tRNA-synt_2b PF00587.20 gi|433589788|ref|YP_007279284.1| - 2.4e-21 76.0 0.0 3.6e-21 75.4 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|433589788|ref|YP_007279284.1| - 3.1e-13 49.4 0.1 6.3e-13 48.4 0.1 1.5 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2d PF01409.15 gi|433589788|ref|YP_007279284.1| - 0.0032 16.7 0.0 0.0054 15.9 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) Sulfatase PF00884.18 gi|433589790|ref|YP_007279286.1| - 8.3e-49 166.4 0.1 1.2e-48 165.9 0.1 1.2 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.17 gi|433589790|ref|YP_007279286.1| - 2.7e-08 33.5 0.0 0.0034 16.7 0.0 2.3 2 0 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase DUF229 PF02995.12 gi|433589790|ref|YP_007279286.1| - 0.00075 18.0 0.2 0.0011 17.4 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF229) Sulfatase_C PF14707.1 gi|433589790|ref|YP_007279286.1| - 0.018 15.2 0.1 0.053 13.8 0.0 1.8 2 0 0 2 2 2 0 C-terminal region of aryl-sulfatase DUF1501 PF07394.7 gi|433589790|ref|YP_007279286.1| - 0.1 11.4 0.1 0.62 8.8 0.1 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1501) DUF1481 PF07356.7 gi|433589791|ref|YP_007279287.1| - 0.042 13.3 0.0 0.21 11.0 0.0 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1481) Prok-JAB PF14464.1 gi|433589792|ref|YP_007279288.1| - 8.4e-21 73.5 0.0 1.1e-20 73.1 0.0 1.1 1 0 0 1 1 1 1 Prokaryotic homologs of the JAB domain JAB PF01398.16 gi|433589792|ref|YP_007279288.1| - 5.3e-10 39.0 0.0 7.2e-10 38.6 0.0 1.1 1 0 0 1 1 1 1 JAB1/Mov34/MPN/PAD-1 ubiquitin protease Toxin-JAB1 PF15659.1 gi|433589792|ref|YP_007279288.1| - 0.021 14.6 0.0 0.027 14.3 0.0 1.1 1 0 0 1 1 1 0 JAB-like toxin 1 Peripla_BP_2 PF01497.13 gi|433589793|ref|YP_007279289.1| - 1.4e-40 138.9 1.2 1.7e-40 138.6 0.8 1.1 1 0 0 1 1 1 1 Periplasmic binding protein MoeA_N PF03453.12 gi|433589794|ref|YP_007279290.1| - 2.7e-46 156.8 1.1 4.1e-46 156.2 0.8 1.3 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.19 gi|433589794|ref|YP_007279290.1| - 2.1e-27 95.3 0.1 4e-27 94.3 0.0 1.5 1 0 0 1 1 1 1 Probable molybdopterin binding domain PBP_like PF12727.2 gi|433589794|ref|YP_007279290.1| - 1.3e-26 92.7 0.0 6.8e-26 90.4 0.0 2.2 1 1 0 1 1 1 1 PBP superfamily domain MoeA_C PF03454.10 gi|433589794|ref|YP_007279290.1| - 9.3e-14 51.1 0.0 2.3e-13 49.8 0.0 1.7 1 0 0 1 1 1 1 MoeA C-terminal region (domain IV) PBP_like_2 PF12849.2 gi|433589794|ref|YP_007279290.1| - 0.011 15.2 0.0 0.045 13.2 0.0 2.1 2 1 0 2 2 2 0 PBP superfamily domain Beta-lactamase PF00144.19 gi|433589795|ref|YP_007279291.1| - 1.3e-69 234.7 0.9 1.6e-69 234.4 0.6 1.0 1 0 0 1 1 1 1 Beta-lactamase DUF1707 PF08044.6 gi|433589795|ref|YP_007279291.1| - 0.61 9.8 4.9 0.15 11.8 0.3 2.3 3 0 0 3 3 3 0 Domain of unknown function (DUF1707) DUF1272 PF06906.6 gi|433589796|ref|YP_007279292.1| - 0.0013 18.5 0.4 0.0014 18.4 0.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1272) Desulfoferrod_N PF06397.7 gi|433589796|ref|YP_007279292.1| - 0.022 14.1 0.6 0.03 13.7 0.4 1.3 1 0 0 1 1 1 0 Desulfoferrodoxin, N-terminal domain zf-UBR PF02207.15 gi|433589796|ref|YP_007279292.1| - 0.022 14.4 2.6 0.31 10.8 0.1 2.0 1 1 1 2 2 2 0 Putative zinc finger in N-recognin (UBR box) zf-C2HC5 PF06221.8 gi|433589796|ref|YP_007279292.1| - 0.093 12.5 0.7 0.15 11.8 0.5 1.4 1 1 0 1 1 1 0 Putative zinc finger motif, C2HC5-type MoeA_N PF03453.12 gi|433589797|ref|YP_007279293.1| - 1.1e-42 145.1 2.9 1.8e-42 144.4 2.0 1.4 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.19 gi|433589797|ref|YP_007279293.1| - 2.8e-27 94.9 0.1 4.3e-27 94.2 0.0 1.3 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.10 gi|433589797|ref|YP_007279293.1| - 5.2e-19 67.9 2.5 4.2e-18 65.0 0.0 3.4 3 1 0 3 3 3 1 MoeA C-terminal region (domain IV) HSP20 PF00011.16 gi|433589798|ref|YP_007279294.1| - 4.2e-13 49.0 0.0 5e-13 48.7 0.0 1.0 1 0 0 1 1 1 1 Hsp20/alpha crystallin family ABC1 PF03109.11 gi|433589799|ref|YP_007279295.1| - 1.9e-28 98.8 0.0 6.9e-28 97.0 0.0 1.9 2 0 0 2 2 2 1 ABC1 family APH PF01636.18 gi|433589799|ref|YP_007279295.1| - 5.7e-05 22.9 0.5 0.0068 16.1 0.2 3.1 2 1 1 3 3 3 1 Phosphotransferase enzyme family WaaY PF06176.6 gi|433589799|ref|YP_007279295.1| - 0.0034 16.6 0.1 0.0058 15.8 0.0 1.4 1 0 0 1 1 1 1 Lipopolysaccharide core biosynthesis protein (WaaY) RIO1 PF01163.17 gi|433589799|ref|YP_007279295.1| - 0.0096 15.2 0.0 0.023 14.0 0.0 1.6 1 0 0 1 1 1 1 RIO1 family MR_MLE_C PF13378.1 gi|433589800|ref|YP_007279296.1| - 0.0022 17.9 0.0 0.0042 17.0 0.0 1.4 1 0 0 1 1 1 1 Enolase C-terminal domain-like MAAL_C PF07476.6 gi|433589800|ref|YP_007279296.1| - 0.088 11.7 0.0 0.14 11.0 0.0 1.2 1 0 0 1 1 1 0 Methylaspartate ammonia-lyase C-terminus eIF-5a PF01287.15 gi|433589801|ref|YP_007279297.1| - 4.8e-05 23.2 1.9 9.1e-05 22.3 1.3 1.5 1 1 0 1 1 1 1 Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold EFP_N PF08207.7 gi|433589801|ref|YP_007279297.1| - 0.00076 19.2 0.0 0.028 14.2 0.0 2.2 2 0 0 2 2 2 1 Elongation factor P (EF-P) KOW-like domain EFP PF01132.15 gi|433589801|ref|YP_007279297.1| - 0.021 14.5 0.0 0.039 13.6 0.0 1.5 1 0 0 1 1 1 0 Elongation factor P (EF-P) OB domain KOW PF00467.24 gi|433589801|ref|YP_007279297.1| - 0.033 13.9 0.0 1.2 9.0 0.0 2.3 2 0 0 2 2 2 0 KOW motif Arginase PF00491.16 gi|433589802|ref|YP_007279298.1| - 4.3e-57 193.5 1.4 5.1e-57 193.2 1.0 1.0 1 0 0 1 1 1 1 Arginase family NUDIX PF00293.23 gi|433589803|ref|YP_007279299.1| - 2.9e-17 62.5 0.9 3.9e-17 62.1 0.6 1.1 1 0 0 1 1 1 1 NUDIX domain DUF3565 PF12088.3 gi|433589804|ref|YP_007279300.1| - 0.23 11.2 0.1 0.23 11.2 0.1 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3565) ADH_zinc_N PF00107.21 gi|433589807|ref|YP_007279303.1| - 6.7e-35 119.4 0.1 1e-34 118.8 0.0 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.1 gi|433589807|ref|YP_007279303.1| - 1.3e-21 77.7 0.3 4.8e-21 75.9 0.1 1.9 2 0 0 2 2 2 1 Zinc-binding dehydrogenase ADH_N PF08240.7 gi|433589807|ref|YP_007279303.1| - 4.5e-16 58.5 0.3 4.6e-14 52.0 0.1 2.5 1 1 1 2 2 2 2 Alcohol dehydrogenase GroES-like domain NAD_binding_10 PF13460.1 gi|433589807|ref|YP_007279303.1| - 0.056 13.4 0.2 0.083 12.8 0.2 1.3 1 0 0 1 1 1 0 NADH(P)-binding ProRS-C_1 PF09180.6 gi|433589808|ref|YP_007279304.1| - 3.2e-17 62.1 0.1 8.1e-17 60.9 0.1 1.7 1 0 0 1 1 1 1 Prolyl-tRNA synthetase, C-terminal HGTP_anticodon PF03129.15 gi|433589808|ref|YP_007279304.1| - 8e-17 60.9 0.2 1.5e-16 60.0 0.1 1.5 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2b PF00587.20 gi|433589808|ref|YP_007279304.1| - 3.2e-16 59.3 0.0 8.4e-16 58.0 0.0 1.7 2 0 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) Glu_synthase PF01645.12 gi|433589809|ref|YP_007279305.1| - 1e-153 511.6 0.3 1.6e-152 507.7 0.0 2.1 2 0 0 2 2 2 1 Conserved region in glutamate synthase GATase_2 PF00310.16 gi|433589809|ref|YP_007279305.1| - 1.5e-120 402.2 0.0 2.6e-120 401.4 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferases class-II Glu_syn_central PF04898.9 gi|433589809|ref|YP_007279305.1| - 8.2e-111 369.8 0.0 1.3e-110 369.1 0.0 1.3 1 0 0 1 1 1 1 Glutamate synthase central domain GXGXG PF01493.14 gi|433589809|ref|YP_007279305.1| - 3.1e-63 212.4 5.0 5.2e-63 211.6 3.5 1.3 1 0 0 1 1 1 1 GXGXG motif FMN_dh PF01070.13 gi|433589809|ref|YP_007279305.1| - 0.027 13.3 4.6 0.043 12.6 1.7 2.2 2 0 0 2 2 2 0 FMN-dependent dehydrogenase DUF1015 PF06245.6 gi|433589809|ref|YP_007279305.1| - 0.043 12.3 0.1 0.33 9.3 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1015) SpoVR PF04293.8 gi|433589809|ref|YP_007279305.1| - 0.13 10.5 0.1 0.26 9.6 0.1 1.4 1 0 0 1 1 1 0 SpoVR like protein Methyltransf_11 PF08241.7 gi|433589810|ref|YP_007279306.1| - 3.2e-16 59.6 0.0 8.8e-16 58.1 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|433589810|ref|YP_007279306.1| - 1.8e-14 53.7 0.0 2.4e-14 53.3 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|433589810|ref|YP_007279306.1| - 3.9e-13 49.2 0.0 5.3e-13 48.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|433589810|ref|YP_007279306.1| - 2.8e-09 37.2 0.0 8.1e-09 35.7 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|433589810|ref|YP_007279306.1| - 2.9e-08 34.2 0.0 7.1e-08 33.0 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|433589810|ref|YP_007279306.1| - 3e-08 33.0 0.0 7.5e-08 31.7 0.0 1.6 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.7 gi|433589810|ref|YP_007279306.1| - 3.1e-07 30.8 0.0 7.5e-07 29.5 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|433589810|ref|YP_007279306.1| - 2.1e-05 24.5 0.2 5.4e-05 23.1 0.1 1.7 1 1 0 1 1 1 1 Methyltransferase domain CMAS PF02353.15 gi|433589810|ref|YP_007279306.1| - 0.00031 19.9 0.0 0.00037 19.6 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_8 PF05148.10 gi|433589810|ref|YP_007279306.1| - 0.012 15.2 0.0 0.02 14.4 0.0 1.5 1 0 0 1 1 1 0 Hypothetical methyltransferase CMD PF02627.15 gi|433589811|ref|YP_007279307.1| - 1.4e-10 40.8 1.5 3.5e-09 36.3 0.4 2.5 1 1 1 2 2 2 2 Carboxymuconolactone decarboxylase family DUF123 PF01986.11 gi|433589812|ref|YP_007279308.1| - 9.4e-26 89.8 0.0 1.2e-25 89.5 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF123 KaiC PF06745.8 gi|433589814|ref|YP_007279310.1| - 1.3e-14 53.8 0.0 1.9e-14 53.3 0.0 1.2 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|433589814|ref|YP_007279310.1| - 0.016 14.6 0.8 0.23 10.8 0.3 2.4 1 1 0 1 1 1 0 AAA domain DUF2348 PF09807.4 gi|433589814|ref|YP_007279310.1| - 0.095 11.7 0.0 0.13 11.3 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2348) Epimerase PF01370.16 gi|433589815|ref|YP_007279311.1| - 7.7e-37 126.9 0.6 6.8e-36 123.8 0.4 2.0 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.1 gi|433589815|ref|YP_007279311.1| - 9.5e-15 55.0 0.2 1.7e-14 54.2 0.1 1.4 1 0 0 1 1 1 1 NADH(P)-binding NAD_binding_4 PF07993.7 gi|433589815|ref|YP_007279311.1| - 1.7e-09 37.0 0.0 8.6e-06 24.8 0.0 2.2 2 0 0 2 2 2 2 Male sterility protein 3Beta_HSD PF01073.14 gi|433589815|ref|YP_007279311.1| - 9.9e-08 31.0 0.0 2.5e-05 23.1 0.0 2.1 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.12 gi|433589815|ref|YP_007279311.1| - 2e-07 30.2 0.0 0.0034 16.3 0.0 2.1 2 0 0 2 2 2 2 RmlD substrate binding domain NmrA PF05368.8 gi|433589815|ref|YP_007279311.1| - 0.0014 17.9 0.0 0.0034 16.6 0.0 1.6 2 0 0 2 2 2 1 NmrA-like family adh_short PF00106.20 gi|433589815|ref|YP_007279311.1| - 0.018 14.9 0.1 0.04 13.8 0.1 1.6 1 0 0 1 1 1 0 short chain dehydrogenase Cation_efflux PF01545.16 gi|433589816|ref|YP_007279312.1| - 0.018 14.1 0.4 0.018 14.1 0.3 2.1 2 0 0 2 2 2 0 Cation efflux family DUF4231 PF14015.1 gi|433589816|ref|YP_007279312.1| - 0.22 11.5 0.1 0.22 11.5 0.1 3.2 3 0 0 3 3 3 0 Protein of unknown function (DUF4231) DUF4164 PF13747.1 gi|433589816|ref|YP_007279312.1| - 1.5 9.0 7.1 5.2 7.2 3.4 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4164) Fe-ADH_2 PF13685.1 gi|433589817|ref|YP_007279313.1| - 7.6e-60 202.3 1.1 9.8e-60 201.9 0.8 1.1 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.14 gi|433589817|ref|YP_007279313.1| - 3.3e-23 81.9 5.9 5.1e-23 81.2 4.1 1.2 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.15 gi|433589817|ref|YP_007279313.1| - 3.4e-09 36.0 0.2 1.1e-08 34.3 0.1 1.7 1 1 0 1 1 1 1 3-dehydroquinate synthase ABC2_membrane_2 PF12679.2 gi|433589818|ref|YP_007279314.1| - 2.3e-35 121.8 16.1 4.2e-35 120.9 11.1 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|433589818|ref|YP_007279314.1| - 6.6e-23 81.0 16.8 8.5e-23 80.7 11.7 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|433589818|ref|YP_007279314.1| - 5.1e-13 48.7 19.4 5.1e-13 48.7 13.4 1.9 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|433589818|ref|YP_007279314.1| - 9.8e-10 38.0 4.2 9.8e-10 38.0 2.9 1.9 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|433589818|ref|YP_007279314.1| - 7.3e-07 28.5 14.5 1.4e-06 27.6 10.1 1.4 1 0 0 1 1 1 1 ABC-2 type transporter 7tm_1 PF00001.16 gi|433589818|ref|YP_007279314.1| - 1.1 8.3 8.4 0.72 8.9 1.0 2.4 1 1 1 2 2 2 0 7 transmembrane receptor (rhodopsin family) ABC_tran PF00005.22 gi|433589819|ref|YP_007279315.1| - 1e-28 100.3 0.0 1.6e-28 99.6 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|433589819|ref|YP_007279315.1| - 5.8e-12 46.1 0.0 1.3e-07 31.9 0.0 2.1 1 1 0 2 2 2 2 AAA domain DUF258 PF03193.11 gi|433589819|ref|YP_007279315.1| - 0.00076 18.7 0.0 0.0013 17.9 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_25 PF13481.1 gi|433589819|ref|YP_007279315.1| - 0.0032 16.9 0.3 0.072 12.4 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_23 PF13476.1 gi|433589819|ref|YP_007279315.1| - 0.0097 16.2 0.1 0.017 15.4 0.1 1.3 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|433589819|ref|YP_007279315.1| - 0.012 15.0 0.0 0.024 14.1 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain MMR_HSR1 PF01926.18 gi|433589819|ref|YP_007279315.1| - 0.02 14.8 0.0 0.069 13.1 0.0 1.8 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_16 PF13191.1 gi|433589819|ref|YP_007279315.1| - 0.022 14.7 0.0 0.05 13.5 0.0 1.7 1 1 0 1 1 1 0 AAA ATPase domain AAA_22 PF13401.1 gi|433589819|ref|YP_007279315.1| - 0.057 13.5 0.0 0.38 10.8 0.0 2.5 1 1 1 2 2 2 0 AAA domain AAA_10 PF12846.2 gi|433589819|ref|YP_007279315.1| - 0.062 12.7 0.0 0.12 11.8 0.0 1.4 1 0 0 1 1 1 0 AAA-like domain MobB PF03205.9 gi|433589819|ref|YP_007279315.1| - 0.087 12.5 0.1 0.93 9.1 0.0 2.4 2 1 1 3 3 3 0 Molybdopterin guanine dinucleotide synthesis protein B Peptidase_S9 PF00326.16 gi|433589820|ref|YP_007279316.1| - 4.7e-49 166.5 0.0 8.8e-49 165.6 0.0 1.5 1 0 0 1 1 1 1 Prolyl oligopeptidase family Peptidase_S15 PF02129.13 gi|433589820|ref|YP_007279316.1| - 7.3e-12 45.2 0.0 2.7e-09 36.8 0.1 2.2 1 1 1 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) DLH PF01738.13 gi|433589820|ref|YP_007279316.1| - 9.8e-11 41.3 0.0 2.2e-07 30.4 0.0 2.1 2 0 0 2 2 2 2 Dienelactone hydrolase family Abhydrolase_5 PF12695.2 gi|433589820|ref|YP_007279316.1| - 9.4e-10 38.4 0.0 1.7e-09 37.5 0.0 1.4 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_6 PF12697.2 gi|433589820|ref|YP_007279316.1| - 2.5e-09 37.3 0.4 9.1e-09 35.5 0.2 1.9 1 1 0 1 1 1 1 Alpha/beta hydrolase family AXE1 PF05448.7 gi|433589820|ref|YP_007279316.1| - 1.1e-06 27.4 0.0 0.00017 20.2 0.0 2.2 1 1 0 1 1 1 1 Acetyl xylan esterase (AXE1) Peptidase_S9_N PF02897.10 gi|433589820|ref|YP_007279316.1| - 1e-05 24.2 0.0 1.7e-05 23.5 0.0 1.3 1 0 0 1 1 1 1 Prolyl oligopeptidase, N-terminal beta-propeller domain PD40 PF07676.7 gi|433589820|ref|YP_007279316.1| - 1.6e-05 24.4 5.2 0.00011 21.8 0.5 3.5 3 0 0 3 3 3 1 WD40-like Beta Propeller Repeat Abhydrolase_3 PF07859.8 gi|433589820|ref|YP_007279316.1| - 2.2e-05 24.1 0.0 0.00051 19.6 0.0 2.3 1 1 0 1 1 1 1 alpha/beta hydrolase fold BAAT_C PF08840.6 gi|433589820|ref|YP_007279316.1| - 0.00056 19.6 0.0 0.049 13.3 0.0 2.2 1 1 0 1 1 1 1 BAAT / Acyl-CoA thioester hydrolase C terminal Abhydrolase_1 PF00561.15 gi|433589820|ref|YP_007279316.1| - 0.00084 18.9 0.0 0.15 11.5 0.0 2.3 1 1 0 2 2 2 1 alpha/beta hydrolase fold Abhydrolase_2 PF02230.11 gi|433589820|ref|YP_007279316.1| - 0.0025 17.2 0.0 0.59 9.5 0.0 2.2 2 0 0 2 2 2 1 Phospholipase/Carboxylesterase Abhydrolase_4 PF08386.5 gi|433589820|ref|YP_007279316.1| - 0.0058 16.5 0.0 0.012 15.4 0.0 1.5 1 0 0 1 1 1 1 TAP-like protein Esterase PF00756.15 gi|433589820|ref|YP_007279316.1| - 0.063 12.6 0.0 0.22 10.9 0.0 1.9 2 0 0 2 2 2 0 Putative esterase DUF218 PF02698.12 gi|433589820|ref|YP_007279316.1| - 0.11 11.9 0.0 0.24 10.8 0.0 1.4 1 0 0 1 1 1 0 DUF218 domain Glyco_trans_4_4 PF13579.1 gi|433589822|ref|YP_007279318.1| - 4.6e-15 56.1 5.3 4.6e-15 56.1 3.6 2.3 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glycos_transf_1 PF00534.15 gi|433589822|ref|YP_007279318.1| - 6.2e-12 45.2 0.0 8.6e-12 44.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|433589822|ref|YP_007279318.1| - 6.1e-07 29.3 0.0 4.4e-06 26.5 0.0 2.3 2 1 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_2 PF13477.1 gi|433589822|ref|YP_007279318.1| - 0.0029 17.4 0.0 0.0055 16.5 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like YmdB PF13277.1 gi|433589822|ref|YP_007279318.1| - 0.13 11.2 0.0 0.23 10.4 0.0 1.3 1 0 0 1 1 1 0 YmdB-like protein HIT PF01230.18 gi|433589823|ref|YP_007279319.1| - 1.5e-19 70.3 0.2 1.9e-19 70.0 0.1 1.1 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.3 gi|433589823|ref|YP_007279319.1| - 1e-09 38.6 0.0 1.3e-09 38.3 0.0 1.1 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.10 gi|433589823|ref|YP_007279319.1| - 0.00073 19.1 0.0 0.00092 18.8 0.0 1.2 1 0 0 1 1 1 1 Protein similar to CwfJ C-terminus 1 PALP PF00291.20 gi|433589824|ref|YP_007279320.1| - 5.8e-43 147.2 0.4 6.8e-43 147.0 0.2 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Cons_hypoth698 PF03601.9 gi|433589825|ref|YP_007279321.1| - 4.3e-61 206.2 22.8 5.5e-61 205.8 15.8 1.0 1 0 0 1 1 1 1 Conserved hypothetical protein 698 DUF2417 PF10329.4 gi|433589825|ref|YP_007279321.1| - 0.032 13.6 1.4 0.073 12.4 1.0 1.6 1 0 0 1 1 1 0 Region of unknown function (DUF2417) PAP2 PF01569.16 gi|433589827|ref|YP_007279323.1| - 1.3e-19 70.1 4.6 1.3e-19 70.1 3.2 2.5 2 0 0 2 2 2 1 PAP2 superfamily PAP2_3 PF14378.1 gi|433589827|ref|YP_007279323.1| - 1.5e-08 34.3 7.7 3.3e-08 33.2 5.4 1.5 1 0 0 1 1 1 1 PAP2 superfamily PAP2_C PF14360.1 gi|433589827|ref|YP_007279323.1| - 0.00025 21.2 1.5 0.0007 19.8 1.1 1.7 1 0 0 1 1 1 1 PAP2 superfamily C-terminal Sulfatase PF00884.18 gi|433589829|ref|YP_007279325.1| - 8.6e-50 169.6 0.0 1.1e-49 169.3 0.0 1.1 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.17 gi|433589829|ref|YP_007279325.1| - 3.7e-13 49.5 1.0 8.6e-12 45.0 0.7 2.4 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase DUF1501 PF07394.7 gi|433589829|ref|YP_007279325.1| - 0.038 12.8 0.1 0.14 10.9 0.1 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF1501) HSP20 PF00011.16 gi|433589830|ref|YP_007279326.1| - 0.13 12.0 0.0 0.2 11.5 0.0 1.3 1 1 0 1 1 1 0 Hsp20/alpha crystallin family PSII_BNR PF14870.1 gi|433589831|ref|YP_007279327.1| - 2.7e-07 29.8 0.0 0.00022 20.3 0.0 2.5 2 1 0 2 2 2 2 Photosynthesis system II assembly factor YCF48 Hydrolase PF00702.21 gi|433589832|ref|YP_007279328.1| - 1.5e-39 136.6 8.7 3.5e-39 135.4 6.0 1.7 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase E1-E2_ATPase PF00122.15 gi|433589832|ref|YP_007279328.1| - 7.3e-36 123.3 1.9 1.3e-35 122.5 1.3 1.4 1 0 0 1 1 1 1 E1-E2 ATPase HAD PF12710.2 gi|433589832|ref|YP_007279328.1| - 2.1e-13 50.8 0.1 6.5e-13 49.2 0.0 1.9 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.21 gi|433589832|ref|YP_007279328.1| - 7e-10 38.9 0.0 2.7e-09 37.0 0.0 2.1 2 0 0 2 2 2 1 Heavy-metal-associated domain Hydrolase_3 PF08282.7 gi|433589832|ref|YP_007279328.1| - 0.0039 16.8 0.7 0.011 15.3 0.7 1.5 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase MFS_1 PF07690.11 gi|433589833|ref|YP_007279329.1| - 1.6e-30 106.0 41.3 1.6e-30 106.0 28.6 1.9 1 1 1 2 2 2 2 Major Facilitator Superfamily ATG22 PF11700.3 gi|433589833|ref|YP_007279329.1| - 1.2e-06 27.2 6.8 2.9e-06 26.0 4.7 1.6 1 0 0 1 1 1 1 Vacuole effluxer Atg22 like MFS_1_like PF12832.2 gi|433589833|ref|YP_007279329.1| - 9.7e-06 25.2 0.1 1 9.2 0.0 3.6 3 0 0 3 3 3 3 MFS_1 like family LacY_symp PF01306.14 gi|433589833|ref|YP_007279329.1| - 0.012 14.1 5.0 0.088 11.3 2.1 2.6 2 1 0 2 2 2 0 LacY proton/sugar symporter Sugar_tr PF00083.19 gi|433589833|ref|YP_007279329.1| - 0.2 10.1 35.1 0.049 12.1 4.5 3.1 2 1 0 3 3 3 0 Sugar (and other) transporter DUF393 PF04134.7 gi|433589834|ref|YP_007279330.1| - 7.6e-12 46.3 0.4 8.9e-12 46.1 0.3 1.1 1 0 0 1 1 1 1 Protein of unknown function, DUF393 Aldolase_II PF00596.16 gi|433589834|ref|YP_007279330.1| - 0.021 14.4 0.0 0.026 14.1 0.0 1.1 1 0 0 1 1 1 0 Class II Aldolase and Adducin N-terminal domain HTH_20 PF12840.2 gi|433589835|ref|YP_007279331.1| - 3.7e-11 42.6 0.5 7.8e-11 41.6 0.2 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain TrmB PF01978.14 gi|433589835|ref|YP_007279331.1| - 2.4e-09 36.7 0.0 4.7e-09 35.8 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.15 gi|433589835|ref|YP_007279331.1| - 6.4e-06 25.7 0.0 1.4e-05 24.6 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|433589835|ref|YP_007279331.1| - 2e-05 24.1 0.1 4.5e-05 23.0 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|433589835|ref|YP_007279331.1| - 4.9e-05 22.6 0.0 0.00012 21.3 0.0 1.7 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.5 gi|433589835|ref|YP_007279331.1| - 6.2e-05 22.4 0.1 6.2e-05 22.4 0.1 2.3 3 0 0 3 3 3 1 IclR helix-turn-helix domain HTH_DeoR PF08220.7 gi|433589835|ref|YP_007279331.1| - 0.0038 16.7 0.0 0.0073 15.8 0.0 1.4 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain MarR PF01047.17 gi|433589835|ref|YP_007279331.1| - 0.0048 16.5 0.0 0.0086 15.7 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_34 PF13601.1 gi|433589835|ref|YP_007279331.1| - 0.0099 15.8 0.0 0.021 14.8 0.0 1.7 1 1 0 1 1 1 1 Winged helix DNA-binding domain HTH_27 PF13463.1 gi|433589835|ref|YP_007279331.1| - 0.01 16.1 0.0 0.023 15.0 0.0 1.7 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_11 PF08279.7 gi|433589835|ref|YP_007279331.1| - 0.012 15.2 0.0 0.04 13.5 0.0 1.8 2 0 0 2 2 2 0 HTH domain PadR PF03551.9 gi|433589835|ref|YP_007279331.1| - 0.02 14.6 0.0 0.066 12.9 0.0 1.9 1 1 1 2 2 2 0 Transcriptional regulator PadR-like family VRR_NUC PF08774.6 gi|433589837|ref|YP_007279333.1| - 0.099 12.6 0.0 0.36 10.8 0.0 1.9 2 0 0 2 2 2 0 VRR-NUC domain LexA_DNA_bind PF01726.11 gi|433589838|ref|YP_007279334.1| - 0.0051 16.3 0.0 0.0078 15.7 0.0 1.3 1 0 0 1 1 1 1 LexA DNA binding domain HTH_27 PF13463.1 gi|433589838|ref|YP_007279334.1| - 0.025 14.8 0.0 0.045 14.0 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain Phage_rep_org_N PF09681.5 gi|433589838|ref|YP_007279334.1| - 0.046 13.2 0.0 0.074 12.6 0.0 1.3 1 1 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) HTH_IclR PF09339.5 gi|433589838|ref|YP_007279334.1| - 0.066 12.8 0.0 0.11 12.0 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|433589838|ref|YP_007279334.1| - 0.13 11.6 0.0 0.18 11.2 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_24 PF13412.1 gi|433589839|ref|YP_007279335.1| - 0.0014 17.9 0.0 0.0019 17.5 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|433589839|ref|YP_007279335.1| - 0.002 17.8 0.1 0.0062 16.3 0.1 1.7 1 1 0 1 1 1 1 Helix-turn-helix domain DUF4423 PF14394.1 gi|433589839|ref|YP_007279335.1| - 0.0045 16.5 0.0 0.0054 16.2 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) MarR_2 PF12802.2 gi|433589839|ref|YP_007279335.1| - 0.0065 16.1 0.1 0.0085 15.7 0.1 1.2 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|433589839|ref|YP_007279335.1| - 0.0096 15.6 2.0 0.014 15.0 0.3 2.0 2 1 1 3 3 3 1 Sugar-specific transcriptional regulator TrmB DUF2250 PF10007.4 gi|433589839|ref|YP_007279335.1| - 0.027 14.3 0.1 0.044 13.6 0.0 1.5 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) Mrr_N PF14338.1 gi|433589839|ref|YP_007279335.1| - 0.061 13.4 0.0 0.095 12.7 0.0 1.4 1 1 0 1 1 1 0 Mrr N-terminal domain Desulfoferrodox PF01880.13 gi|433589842|ref|YP_007279338.1| - 0.024 14.8 0.1 0.034 14.4 0.1 1.2 1 0 0 1 1 1 0 Desulfoferrodoxin TcdB_toxin_midC PF12255.3 gi|433589842|ref|YP_007279338.1| - 0.025 14.2 0.2 0.04 13.5 0.1 1.3 1 1 0 1 1 1 0 Insecticide toxin TcdB middle/C-terminal region DDE_Tnp_1 PF01609.16 gi|433589843|ref|YP_007279339.1| - 1.3e-25 90.1 0.0 1.8e-25 89.7 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_2 PF04693.7 gi|433589843|ref|YP_007279339.1| - 0.0012 17.9 0.1 0.0018 17.3 0.1 1.2 1 0 0 1 1 1 1 Archaeal putative transposase ISC1217 DDE_Tnp_1_2 PF13586.1 gi|433589843|ref|YP_007279339.1| - 0.0082 16.3 0.0 0.023 14.8 0.0 1.7 1 0 0 1 1 1 1 Transposase DDE domain DUF2249 PF10006.4 gi|433589843|ref|YP_007279339.1| - 0.022 14.3 0.2 0.067 12.7 0.1 1.9 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2249) DUF2721 PF11026.3 gi|433589844|ref|YP_007279340.1| - 0.1 12.2 1.7 0.12 11.9 1.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2721) Ion_trans_2 PF07885.11 gi|433589844|ref|YP_007279340.1| - 0.13 12.0 1.1 0.19 11.4 0.8 1.3 1 0 0 1 1 1 0 Ion channel PIRT PF15099.1 gi|433589844|ref|YP_007279340.1| - 0.18 11.0 1.5 0.22 10.7 1.1 1.1 1 0 0 1 1 1 0 Phosphoinositide-interacting protein family DUF1435 PF07256.7 gi|433589844|ref|YP_007279340.1| - 0.22 11.4 2.1 0.33 10.9 1.3 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF1435) YjgP_YjgQ PF03739.9 gi|433589845|ref|YP_007279341.1| - 0.07 11.8 1.6 0.081 11.6 1.1 1.0 1 0 0 1 1 1 0 Predicted permease YjgP/YjgQ family ABC2_membrane_2 PF12679.2 gi|433589845|ref|YP_007279341.1| - 0.34 9.7 7.7 0.4 9.4 5.3 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein CopD PF05425.8 gi|433589845|ref|YP_007279341.1| - 0.41 10.8 5.9 0.47 10.6 4.1 1.2 1 0 0 1 1 1 0 Copper resistance protein D DUF3188 PF11384.3 gi|433589845|ref|YP_007279341.1| - 0.42 10.2 4.0 1.5 8.4 0.2 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3188) RseC_MucC PF04246.7 gi|433589845|ref|YP_007279341.1| - 6.9 6.2 6.9 8.3 5.9 4.8 1.1 1 0 0 1 1 1 0 Positive regulator of sigma(E), RseC/MucC DDE_Tnp_IS1595 PF12762.2 gi|433589846|ref|YP_007279342.1| - 5.1e-23 81.5 0.0 8.2e-23 80.9 0.0 1.3 1 0 0 1 1 1 1 ISXO2-like transposase domain Zn_Tnp_IS1595 PF12760.2 gi|433589846|ref|YP_007279342.1| - 1e-09 38.0 0.9 2.6e-09 36.7 0.6 1.8 1 0 0 1 1 1 1 Transposase zinc-ribbon domain Zn_Tnp_IS1 PF03811.8 gi|433589846|ref|YP_007279342.1| - 0.00011 21.5 6.1 0.00011 21.5 4.2 1.9 2 0 0 2 2 2 1 InsA N-terminal domain DUF2089 PF09862.4 gi|433589846|ref|YP_007279342.1| - 0.023 14.4 0.0 0.038 13.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2089) Zn-ribbon_8 PF09723.5 gi|433589846|ref|YP_007279342.1| - 0.03 14.2 1.5 5.6 6.9 0.2 2.5 2 0 0 2 2 2 0 Zinc ribbon domain ADK_lid PF05191.9 gi|433589846|ref|YP_007279342.1| - 0.045 13.4 0.1 0.045 13.4 0.1 1.9 2 0 0 2 2 2 0 Adenylate kinase, active site lid Auxin_inducible PF02519.9 gi|433589846|ref|YP_007279342.1| - 0.067 13.2 0.0 0.12 12.3 0.0 1.4 1 0 0 1 1 1 0 Auxin responsive protein TF_Zn_Ribbon PF08271.7 gi|433589846|ref|YP_007279342.1| - 0.13 11.5 1.5 0.32 10.3 1.1 1.7 1 1 0 1 1 1 0 TFIIB zinc-binding DUF2387 PF09526.5 gi|433589846|ref|YP_007279342.1| - 0.14 12.1 0.1 0.28 11.1 0.0 1.5 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) zf-Dof PF02701.10 gi|433589846|ref|YP_007279342.1| - 0.15 11.9 2.8 0.31 10.9 1.9 1.5 1 0 0 1 1 1 0 Dof domain, zinc finger zf-ISL3 PF14690.1 gi|433589846|ref|YP_007279342.1| - 0.93 9.5 6.1 6.1 6.9 0.2 2.7 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-C2H2 PF00096.21 gi|433589846|ref|YP_007279342.1| - 1.4 9.4 4.0 0.49 10.8 0.3 2.1 2 0 0 2 2 2 0 Zinc finger, C2H2 type NAD_binding_2 PF03446.10 gi|433589848|ref|YP_007279344.1| - 3.5e-37 127.7 0.0 4.8e-37 127.2 0.0 1.2 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 6PGD PF00393.14 gi|433589848|ref|YP_007279344.1| - 6.2e-23 81.4 0.0 8.7e-23 80.9 0.0 1.2 1 0 0 1 1 1 1 6-phosphogluconate dehydrogenase, C-terminal domain F420_oxidored PF03807.12 gi|433589848|ref|YP_007279344.1| - 1e-05 25.8 0.1 1.5e-05 25.2 0.1 1.3 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent TrkA_N PF02254.13 gi|433589848|ref|YP_007279344.1| - 7.2e-05 22.7 0.1 0.00015 21.7 0.1 1.6 1 0 0 1 1 1 1 TrkA-N domain 2-Hacid_dh_C PF02826.14 gi|433589848|ref|YP_007279344.1| - 8.5e-05 21.7 0.0 0.00012 21.2 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 3HCDH_N PF02737.13 gi|433589848|ref|YP_007279344.1| - 0.00013 21.7 0.1 0.00017 21.2 0.1 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_11 PF14833.1 gi|433589848|ref|YP_007279344.1| - 0.00018 21.5 0.1 0.0018 18.3 0.0 2.5 2 1 0 2 2 2 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase ADH_zinc_N PF00107.21 gi|433589848|ref|YP_007279344.1| - 0.016 14.7 0.3 0.027 14.0 0.2 1.4 1 0 0 1 1 1 0 Zinc-binding dehydrogenase UDPG_MGDP_dh_N PF03721.9 gi|433589848|ref|YP_007279344.1| - 0.024 14.0 0.0 0.049 13.0 0.0 1.5 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain PAS_9 PF13426.1 gi|433589849|ref|YP_007279345.1| - 1.6e-27 95.9 0.1 8.1e-14 51.8 0.0 2.6 2 0 0 2 2 2 2 PAS domain PAS_4 PF08448.5 gi|433589849|ref|YP_007279345.1| - 1.7e-22 79.5 6.1 3.5e-15 56.0 0.8 2.8 2 0 0 2 2 2 2 PAS fold PAS PF00989.19 gi|433589849|ref|YP_007279345.1| - 3.2e-21 75.2 0.1 1.5e-12 47.2 0.0 2.7 2 0 0 2 2 2 2 PAS fold HATPase_c PF02518.21 gi|433589849|ref|YP_007279345.1| - 7.8e-18 64.2 0.0 1.4e-17 63.3 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF_2 PF13185.1 gi|433589849|ref|YP_007279345.1| - 2e-17 64.0 1.6 4.9e-16 59.5 0.3 2.8 2 0 0 2 2 2 1 GAF domain GAF_3 PF13492.1 gi|433589849|ref|YP_007279345.1| - 1.9e-10 40.9 0.1 8.9e-10 38.7 0.1 2.2 1 0 0 1 1 1 1 GAF domain PAS_8 PF13188.1 gi|433589849|ref|YP_007279345.1| - 5.2e-10 38.8 1.2 0.00018 21.2 0.1 3.2 3 0 0 3 3 3 2 PAS domain HATPase_c_2 PF13581.1 gi|433589849|ref|YP_007279345.1| - 1.2e-07 31.5 0.1 5.8e-07 29.3 0.0 2.2 1 1 0 1 1 1 1 Histidine kinase-like ATPase domain Response_reg PF00072.19 gi|433589849|ref|YP_007279345.1| - 2.2e-07 30.8 0.1 6.3e-07 29.3 0.1 1.8 1 0 0 1 1 1 1 Response regulator receiver domain PAS_7 PF12860.2 gi|433589849|ref|YP_007279345.1| - 4.9e-07 29.7 1.0 0.00039 20.4 0.0 4.2 3 2 0 3 3 3 1 PAS fold HisKA PF00512.20 gi|433589849|ref|YP_007279345.1| - 0.00018 21.4 0.3 0.00018 21.4 0.2 2.6 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain PAS_3 PF08447.6 gi|433589849|ref|YP_007279345.1| - 0.00084 19.3 0.0 2.1 8.5 0.0 2.6 2 0 0 2 2 2 2 PAS fold PAS_10 PF13596.1 gi|433589849|ref|YP_007279345.1| - 0.012 15.8 0.0 1.2 9.4 0.0 2.5 2 0 0 2 2 2 0 PAS domain SPOB_a PF14689.1 gi|433589849|ref|YP_007279345.1| - 0.017 14.7 0.3 0.14 11.7 0.1 2.2 2 0 0 2 2 2 0 Sensor_kinase_SpoOB-type, alpha-helical domain CopD PF05425.8 gi|433589851|ref|YP_007279347.1| - 0.0019 18.4 9.1 0.0019 18.4 6.3 2.3 1 1 1 2 2 2 1 Copper resistance protein D Ni_hydr_CYTB PF01292.15 gi|433589851|ref|YP_007279347.1| - 9.8 5.5 8.5 3e+02 0.6 5.9 2.2 1 1 0 1 1 1 0 Prokaryotic cytochrome b561 DUF457 PF04307.9 gi|433589852|ref|YP_007279348.1| - 5e-05 22.6 13.1 5e-05 22.6 9.1 1.8 1 1 0 2 2 2 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) dUTPase PF00692.14 gi|433589853|ref|YP_007279349.1| - 5.6e-14 51.7 0.0 8.4e-14 51.1 0.0 1.3 1 0 0 1 1 1 1 dUTPase Aconitase PF00330.15 gi|433589854|ref|YP_007279350.1| - 7.4e-106 354.4 0.5 2.9e-76 256.8 0.0 2.2 1 1 1 2 2 2 2 Aconitase family (aconitate hydratase) Aconitase_C PF00694.14 gi|433589854|ref|YP_007279350.1| - 1.1e-21 77.2 0.0 2.1e-21 76.3 0.0 1.5 1 0 0 1 1 1 1 Aconitase C-terminal domain Bac_luciferase PF00296.15 gi|433589855|ref|YP_007279351.1| - 1.5e-50 172.1 7.7 1.5e-50 172.1 4.6 1.4 1 1 0 1 1 1 1 Luciferase-like monooxygenase Metal_resist PF13801.1 gi|433589856|ref|YP_007279352.1| - 0.38 10.7 5.9 0.35 10.8 0.3 2.8 3 0 0 3 3 3 0 Heavy-metal resistance Beta-Casp PF10996.3 gi|433589857|ref|YP_007279353.1| - 2.9e-16 59.5 0.0 4.9e-16 58.8 0.0 1.3 1 0 0 1 1 1 1 Beta-Casp domain Lactamase_B PF00753.22 gi|433589857|ref|YP_007279353.1| - 6.4e-15 55.3 3.8 1.3e-14 54.3 2.7 1.5 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily RMMBL PF07521.7 gi|433589857|ref|YP_007279353.1| - 3.6e-13 49.0 0.1 1.4e-12 47.2 0.0 2.0 2 0 0 2 2 2 1 RNA-metabolising metallo-beta-lactamase Lactamase_B_2 PF12706.2 gi|433589857|ref|YP_007279353.1| - 7.3e-10 38.7 0.0 3.7e-09 36.4 0.0 1.9 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|433589857|ref|YP_007279353.1| - 0.1 12.3 0.3 0.25 11.0 0.2 1.7 1 1 0 1 1 1 0 Beta-lactamase superfamily domain AsnC_trans_reg PF01037.16 gi|433589858|ref|YP_007279354.1| - 8e-09 35.0 0.1 1.3e-08 34.3 0.1 1.3 1 0 0 1 1 1 1 AsnC family HTH_24 PF13412.1 gi|433589858|ref|YP_007279354.1| - 7.4e-08 31.6 0.0 1.7e-07 30.4 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|433589858|ref|YP_007279354.1| - 4.9e-06 26.1 0.0 1.9e-05 24.2 0.0 1.9 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|433589858|ref|YP_007279354.1| - 9e-06 25.1 0.0 1.7e-05 24.3 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_27 PF13463.1 gi|433589858|ref|YP_007279354.1| - 2.1e-05 24.7 0.2 4.5e-05 23.7 0.0 1.7 2 0 0 2 2 1 1 Winged helix DNA-binding domain HTH_5 PF01022.15 gi|433589858|ref|YP_007279354.1| - 3.1e-05 23.5 0.0 5.3e-05 22.7 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|433589858|ref|YP_007279354.1| - 0.00064 19.3 0.0 0.0021 17.6 0.0 1.8 2 0 0 2 2 2 1 MarR family HTH_20 PF12840.2 gi|433589858|ref|YP_007279354.1| - 0.00079 19.1 0.0 0.0015 18.2 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain DUF2250 PF10007.4 gi|433589858|ref|YP_007279354.1| - 0.0073 16.1 0.1 0.014 15.2 0.0 1.5 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) Rrf2 PF02082.15 gi|433589858|ref|YP_007279354.1| - 0.024 14.7 0.0 0.061 13.4 0.0 1.7 2 0 0 2 2 2 0 Transcriptional regulator Sulfolobus_pRN PF05584.6 gi|433589858|ref|YP_007279354.1| - 0.044 13.7 0.0 0.28 11.1 0.0 2.0 2 0 0 2 2 2 0 Sulfolobus plasmid regulatory protein B-block_TFIIIC PF04182.7 gi|433589858|ref|YP_007279354.1| - 0.13 12.1 0.0 0.23 11.3 0.0 1.4 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC Acyl-CoA_dh_1 PF00441.19 gi|433589859|ref|YP_007279355.1| - 1.6e-30 106.1 0.7 2.8e-30 105.4 0.5 1.2 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|433589859|ref|YP_007279355.1| - 4.7e-24 85.1 0.0 4.7e-23 81.9 0.0 2.5 2 1 1 3 3 3 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.14 gi|433589859|ref|YP_007279355.1| - 6.3e-22 76.8 0.0 1.6e-21 75.5 0.0 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.6 gi|433589859|ref|YP_007279355.1| - 4.5e-10 39.9 0.6 6.8e-10 39.3 0.4 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain HpaB_N PF11794.3 gi|433589859|ref|YP_007279355.1| - 0.0022 17.4 0.0 0.0063 15.9 0.0 1.7 1 1 0 1 1 1 1 4-hydroxyphenylacetate 3-hydroxylase N terminal Aminotran_3 PF00202.16 gi|433589860|ref|YP_007279356.1| - 7.8e-92 307.7 0.0 9.4e-92 307.4 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.16 gi|433589860|ref|YP_007279356.1| - 0.01 14.8 0.0 0.014 14.3 0.0 1.3 1 0 0 1 1 1 0 Aminotransferase class I and II DDE_Tnp_1 PF01609.16 gi|433589861|ref|YP_007279357.1| - 9.4e-11 41.6 2.7 1.7e-10 40.8 1.9 1.4 1 0 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.6 gi|433589861|ref|YP_007279357.1| - 0.021 14.7 0.1 0.061 13.2 0.1 1.8 1 0 0 1 1 1 0 Transposase domain (DUF772) DDE_Tnp_1_assoc PF13808.1 gi|433589861|ref|YP_007279357.1| - 0.09 12.4 0.2 0.18 11.5 0.1 1.6 1 0 0 1 1 1 0 DDE_Tnp_1-associated AA_permease_2 PF13520.1 gi|433589862|ref|YP_007279358.1| - 6.3e-47 160.0 45.5 7.5e-47 159.8 31.6 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|433589862|ref|YP_007279358.1| - 3.7e-36 124.4 43.7 4.5e-36 124.2 30.3 1.1 1 0 0 1 1 1 1 Amino acid permease SHOCT PF09851.4 gi|433589863|ref|YP_007279359.1| - 5.2e-05 22.5 0.1 7.5e-05 22.0 0.0 1.3 1 0 0 1 1 1 1 Short C-terminal domain Kinocilin PF15033.1 gi|433589863|ref|YP_007279359.1| - 0.39 10.2 4.8 0.52 9.8 3.3 1.2 1 0 0 1 1 1 0 Kinocilin protein ABC2_membrane PF01061.19 gi|433589863|ref|YP_007279359.1| - 3.6 6.6 10.2 4.5 6.3 7.1 1.0 1 0 0 1 1 1 0 ABC-2 type transporter TM2 PF05154.11 gi|433589864|ref|YP_007279360.1| - 0.0052 16.9 2.5 0.0052 16.9 1.7 1.5 2 0 0 2 2 2 1 TM2 domain Ribosomal_S6e PF01092.14 gi|433589866|ref|YP_007279362.1| - 9.3e-39 131.9 0.4 1.1e-38 131.7 0.3 1.0 1 0 0 1 1 1 1 Ribosomal protein S6e Bax1-I PF01027.15 gi|433589869|ref|YP_007279365.1| - 0.00083 19.0 25.8 0.0011 18.6 17.9 1.1 1 0 0 1 1 1 1 Inhibitor of apoptosis-promoting Bax1 Amastin PF07344.6 gi|433589869|ref|YP_007279365.1| - 3 7.4 9.7 7.6 6.1 6.2 2.1 1 1 0 1 1 1 0 Amastin surface glycoprotein DHHA1 PF02272.14 gi|433589870|ref|YP_007279366.1| - 0.0013 18.3 0.9 0.0042 16.7 0.1 2.3 3 0 0 3 3 3 1 DHHA1 domain PGM_PMM_II PF02879.11 gi|433589870|ref|YP_007279366.1| - 0.0076 16.5 0.1 0.039 14.2 0.1 2.2 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DUF2559 PF10832.3 gi|433589870|ref|YP_007279366.1| - 0.074 12.8 0.1 0.58 10.0 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2559) Usp PF00582.21 gi|433589871|ref|YP_007279367.1| - 8.1e-33 113.5 6.4 9.4e-33 113.3 4.5 1.0 1 0 0 1 1 1 1 Universal stress protein family Usp PF00582.21 gi|433589872|ref|YP_007279368.1| - 1.1e-13 51.6 3.3 1.5e-13 51.0 2.3 1.2 1 0 0 1 1 1 1 Universal stress protein family Acetyltransf_1 PF00583.19 gi|433589873|ref|YP_007279369.1| - 2.3e-16 59.5 0.0 4e-16 58.8 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_3 PF13302.1 gi|433589873|ref|YP_007279369.1| - 3.9e-08 33.5 0.0 5e-08 33.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|433589873|ref|YP_007279369.1| - 9.7e-08 32.1 0.0 1.3e-07 31.7 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|433589873|ref|YP_007279369.1| - 1.9e-06 27.9 0.0 2.5e-06 27.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|433589873|ref|YP_007279369.1| - 4.8e-06 26.6 0.0 1.4e-05 25.1 0.0 1.7 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|433589873|ref|YP_007279369.1| - 1.1e-05 25.1 0.0 1.7e-05 24.4 0.0 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_8 PF13523.1 gi|433589873|ref|YP_007279369.1| - 0.00038 20.3 0.0 0.00047 20.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|433589873|ref|YP_007279369.1| - 0.016 15.0 0.0 0.048 13.5 0.0 1.7 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Tox-PL PF15644.1 gi|433589873|ref|YP_007279369.1| - 0.058 14.1 0.0 0.092 13.4 0.0 1.3 1 0 0 1 1 1 0 Papain fold toxin 1 Usp PF00582.21 gi|433589874|ref|YP_007279370.1| - 1.4e-15 57.6 0.0 2e-15 57.2 0.0 1.2 1 0 0 1 1 1 1 Universal stress protein family AAA PF00004.24 gi|433589875|ref|YP_007279371.1| - 4.7e-39 133.6 0.0 1.1e-38 132.4 0.0 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.1 gi|433589875|ref|YP_007279371.1| - 8.3e-06 26.6 5.3 2.1e-05 25.3 0.0 3.2 2 2 0 2 2 2 1 AAA domain AAA_5 PF07728.9 gi|433589875|ref|YP_007279371.1| - 2.1e-05 24.2 0.0 0.00013 21.7 0.0 2.4 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_22 PF13401.1 gi|433589875|ref|YP_007279371.1| - 7.4e-05 22.9 0.7 0.0047 17.0 0.1 3.0 2 1 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|433589875|ref|YP_007279371.1| - 7.6e-05 23.0 0.2 0.005 17.1 0.0 2.5 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|433589875|ref|YP_007279371.1| - 0.00022 21.2 5.4 0.029 14.3 0.0 3.8 1 1 2 4 4 4 1 AAA ATPase domain AAA_2 PF07724.9 gi|433589875|ref|YP_007279371.1| - 0.00029 20.8 0.0 0.00094 19.1 0.0 1.9 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_25 PF13481.1 gi|433589875|ref|YP_007279371.1| - 0.00036 19.9 0.2 0.0021 17.4 0.0 2.3 2 1 1 3 3 3 1 AAA domain AAA_33 PF13671.1 gi|433589875|ref|YP_007279371.1| - 0.00043 20.1 0.1 0.0025 17.7 0.0 2.3 2 1 0 2 2 2 1 AAA domain RuvB_N PF05496.7 gi|433589875|ref|YP_007279371.1| - 0.00073 18.6 0.0 0.0012 17.9 0.0 1.5 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_28 PF13521.1 gi|433589875|ref|YP_007279371.1| - 0.00086 19.3 0.1 0.0052 16.7 0.0 2.3 2 1 1 3 3 3 1 AAA domain DUF815 PF05673.8 gi|433589875|ref|YP_007279371.1| - 0.0021 17.0 0.1 0.0041 16.0 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF815) MMR_HSR1 PF01926.18 gi|433589875|ref|YP_007279371.1| - 0.0085 16.0 0.0 0.02 14.8 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase TIP49 PF06068.8 gi|433589875|ref|YP_007279371.1| - 0.0087 14.8 0.0 0.016 13.9 0.0 1.5 1 0 0 1 1 1 1 TIP49 C-terminus AAA_19 PF13245.1 gi|433589875|ref|YP_007279371.1| - 0.0093 15.6 0.1 0.025 14.3 0.1 1.6 1 0 0 1 1 1 1 Part of AAA domain IstB_IS21 PF01695.12 gi|433589875|ref|YP_007279371.1| - 0.011 15.1 0.4 0.041 13.2 0.0 2.1 2 1 0 2 2 2 0 IstB-like ATP binding protein AAA_14 PF13173.1 gi|433589875|ref|YP_007279371.1| - 0.012 15.4 0.0 0.034 14.0 0.0 1.8 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.7 gi|433589875|ref|YP_007279371.1| - 0.018 14.1 0.0 0.036 13.1 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin T2SE PF00437.15 gi|433589875|ref|YP_007279371.1| - 0.019 13.8 0.0 0.043 12.7 0.0 1.6 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_3 PF07726.6 gi|433589875|ref|YP_007279371.1| - 0.029 13.9 0.2 0.085 12.4 0.0 1.9 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.16 gi|433589875|ref|YP_007279371.1| - 0.033 13.3 0.0 0.058 12.5 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_11 PF13086.1 gi|433589875|ref|YP_007279371.1| - 0.036 13.6 0.0 0.067 12.7 0.0 1.4 1 1 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|433589875|ref|YP_007279371.1| - 0.044 13.9 0.0 0.086 13.0 0.0 1.6 1 0 0 1 1 1 0 RNA helicase ResIII PF04851.10 gi|433589875|ref|YP_007279371.1| - 0.045 13.5 0.0 0.075 12.8 0.0 1.4 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit ABC_tran PF00005.22 gi|433589875|ref|YP_007279371.1| - 0.045 14.0 0.0 0.46 10.7 0.0 2.2 2 0 0 2 2 2 0 ABC transporter SKI PF01202.17 gi|433589875|ref|YP_007279371.1| - 0.06 13.2 0.0 0.17 11.7 0.0 1.8 1 0 0 1 1 1 0 Shikimate kinase NACHT PF05729.7 gi|433589875|ref|YP_007279371.1| - 0.076 12.6 0.1 3 7.4 0.0 2.4 1 1 1 2 2 2 0 NACHT domain Sigma54_activ_2 PF14532.1 gi|433589875|ref|YP_007279371.1| - 0.18 11.8 0.0 0.36 10.8 0.0 1.6 1 1 0 1 1 1 0 Sigma-54 interaction domain OrfB_Zn_ribbon PF07282.6 gi|433589876|ref|YP_007279372.1| - 3.2e-22 77.9 0.2 5.9e-22 77.1 0.1 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Lipase_GDSL_2 PF13472.1 gi|433589876|ref|YP_007279372.1| - 0.03 14.4 1.6 0.11 12.6 0.4 2.1 1 1 1 2 2 2 0 GDSL-like Lipase/Acylhydrolase family RHH_3 PF12651.2 gi|433589877|ref|YP_007279373.1| - 0.033 13.9 0.0 0.052 13.2 0.0 1.3 1 0 0 1 1 1 0 Ribbon-helix-helix domain DUF3782 PF12644.2 gi|433589878|ref|YP_007279374.1| - 0.11 12.2 0.0 0.13 12.0 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3782) Lactamase_B_2 PF12706.2 gi|433589879|ref|YP_007279375.1| - 2.1e-17 63.2 0.1 3.4e-17 62.6 0.1 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|433589879|ref|YP_007279375.1| - 3.8e-07 29.9 7.0 5.9e-07 29.3 4.8 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Mur_ligase_M PF08245.7 gi|433589879|ref|YP_007279375.1| - 0.16 11.9 0.0 0.28 11.2 0.0 1.3 1 0 0 1 1 1 0 Mur ligase middle domain GTP_EFTU PF00009.22 gi|433589881|ref|YP_007279377.1| - 2.9e-41 140.9 0.0 4.2e-41 140.4 0.0 1.2 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain eIF2_C PF09173.6 gi|433589881|ref|YP_007279377.1| - 4.9e-27 93.8 0.0 9.5e-27 92.8 0.0 1.5 1 0 0 1 1 1 1 Initiation factor eIF2 gamma, C terminal GTP_EFTU_D2 PF03144.20 gi|433589881|ref|YP_007279377.1| - 3.2e-07 30.3 2.1 1.1e-06 28.6 1.5 2.0 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|433589881|ref|YP_007279377.1| - 0.002 18.0 0.0 0.0041 17.0 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase PduV-EutP PF10662.4 gi|433589881|ref|YP_007279377.1| - 0.0067 15.9 0.3 0.11 11.9 0.0 2.3 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation SRPRB PF09439.5 gi|433589881|ref|YP_007279377.1| - 0.038 13.2 0.0 2.4 7.3 0.0 2.2 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit FeoB_N PF02421.13 gi|433589881|ref|YP_007279377.1| - 0.078 12.2 0.2 4 6.6 0.0 2.4 2 1 0 2 2 2 0 Ferrous iron transport protein B Fcf1 PF04900.7 gi|433589882|ref|YP_007279378.1| - 7.4e-10 38.8 0.0 8.7e-10 38.5 0.0 1.1 1 0 0 1 1 1 1 Fcf1 DUF188 PF02639.9 gi|433589882|ref|YP_007279378.1| - 5.2e-07 29.1 0.0 7.2e-07 28.7 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized BCR, YaiI/YqxD family COG1671 PIN_4 PF13638.1 gi|433589882|ref|YP_007279378.1| - 0.0018 18.3 0.0 0.0027 17.8 0.0 1.3 1 1 0 1 1 1 1 PIN domain PIN PF01850.16 gi|433589882|ref|YP_007279378.1| - 0.0026 18.0 0.2 0.09 13.1 0.2 2.0 1 1 1 2 2 2 1 PIN domain PIN_3 PF13470.1 gi|433589882|ref|YP_007279378.1| - 0.0066 17.1 0.4 0.01 16.4 0.3 1.4 1 0 0 1 1 1 1 PIN domain DUF4411 PF14367.1 gi|433589882|ref|YP_007279378.1| - 0.028 14.1 0.1 6.5 6.4 0.0 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4411) XPG_I PF00867.13 gi|433589882|ref|YP_007279378.1| - 0.078 13.0 0.1 0.14 12.2 0.0 1.4 1 0 0 1 1 1 0 XPG I-region SHS2_Rpb7-N PF03876.12 gi|433589883|ref|YP_007279379.1| - 8.5e-16 57.8 0.0 1.4e-15 57.1 0.0 1.3 1 0 0 1 1 1 1 SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 S1 PF00575.18 gi|433589883|ref|YP_007279379.1| - 1.6e-12 47.2 0.3 3.9e-12 46.0 0.2 1.7 1 0 0 1 1 1 1 S1 RNA binding domain Spt4 PF06093.8 gi|433589884|ref|YP_007279380.1| - 7.6e-14 51.3 0.1 9.2e-14 51.0 0.1 1.1 1 0 0 1 1 1 1 Spt4/RpoE2 zinc finger DZR PF12773.2 gi|433589884|ref|YP_007279380.1| - 0.0011 18.7 0.4 0.0011 18.6 0.2 1.2 1 0 0 1 1 1 1 Double zinc ribbon DUF35_N PF12172.3 gi|433589884|ref|YP_007279380.1| - 0.14 12.1 0.4 0.2 11.5 0.3 1.3 1 0 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Cytochrom_c3_2 PF14537.1 gi|433589884|ref|YP_007279380.1| - 0.22 11.9 2.9 0.32 11.3 2.0 1.3 1 0 0 1 1 1 0 Cytochrome c3 Nudix_N_2 PF14803.1 gi|433589884|ref|YP_007279380.1| - 1.1 9.0 4.8 0.89 9.2 0.6 2.2 2 0 0 2 2 2 0 Nudix N-terminal zf-RanBP PF00641.13 gi|433589884|ref|YP_007279380.1| - 1.2 8.2 4.7 1.7 7.8 3.3 1.3 1 0 0 1 1 1 0 Zn-finger in Ran binding protein and others DUF359 PF04019.7 gi|433589885|ref|YP_007279381.1| - 2.7e-37 126.8 0.0 3.6e-37 126.4 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF359) FAD_binding_7 PF03441.9 gi|433589886|ref|YP_007279382.1| - 2.3e-87 292.7 0.1 2.9e-87 292.4 0.1 1.1 1 0 0 1 1 1 1 FAD binding domain of DNA photolyase DNA_photolyase PF00875.13 gi|433589886|ref|YP_007279382.1| - 1.3e-32 112.8 0.7 2.5e-32 111.9 0.5 1.4 1 0 0 1 1 1 1 DNA photolyase MMPL PF03176.10 gi|433589887|ref|YP_007279383.1| - 4.9e-30 104.3 48.7 6.1e-18 64.6 14.8 3.7 3 1 1 4 4 4 2 MMPL family Sterol-sensing PF12349.3 gi|433589887|ref|YP_007279383.1| - 1.4e-08 34.3 12.9 0.00011 21.6 1.6 2.3 2 0 0 2 2 2 2 Sterol-sensing domain of SREBP cleavage-activation SecD_SecF PF02355.11 gi|433589887|ref|YP_007279383.1| - 1.3e-06 27.6 27.2 0.00025 20.3 5.4 2.7 3 0 0 3 3 3 2 Protein export membrane protein Patched PF02460.13 gi|433589887|ref|YP_007279383.1| - 5.1e-05 21.4 16.5 0.00042 18.3 2.3 2.2 2 0 0 2 2 2 2 Patched family ACR_tran PF00873.14 gi|433589887|ref|YP_007279383.1| - 0.00064 17.2 11.6 0.00064 17.2 8.0 3.0 2 1 0 3 3 3 2 AcrB/AcrD/AcrF family DUF1129 PF06570.6 gi|433589887|ref|YP_007279383.1| - 0.46 9.7 16.7 0.017 14.4 2.5 3.5 2 2 1 3 3 3 0 Protein of unknown function (DUF1129) GtrA PF04138.9 gi|433589887|ref|YP_007279383.1| - 7.9 6.4 16.1 2.3 8.1 4.0 2.8 2 1 0 2 2 2 0 GtrA-like protein FixQ PF05545.6 gi|433589888|ref|YP_007279384.1| - 0.12 12.0 3.1 8.3 6.1 0.0 2.4 2 0 0 2 2 2 0 Cbb3-type cytochrome oxidase component FixQ FAA_hydrolase PF01557.13 gi|433589889|ref|YP_007279385.1| - 3e-56 190.2 0.8 9.7e-56 188.6 0.0 1.8 2 0 0 2 2 2 1 Fumarylacetoacetate (FAA) hydrolase family Cyclase PF04199.8 gi|433589890|ref|YP_007279386.1| - 5.7e-43 146.5 0.0 7.5e-43 146.1 0.0 1.2 1 0 0 1 1 1 1 Putative cyclase Hydrolase_4 PF12146.3 gi|433589890|ref|YP_007279386.1| - 0.13 12.1 0.0 13 5.6 0.0 2.4 2 0 0 2 2 2 0 Putative lysophospholipase CitMHS PF03600.11 gi|433589891|ref|YP_007279387.1| - 4.2e-46 157.1 0.0 8.1e-41 139.7 0.0 1.9 1 1 1 2 2 2 2 Citrate transporter TrkA_C PF02080.16 gi|433589891|ref|YP_007279387.1| - 3e-21 74.7 0.9 1.8e-12 46.6 0.0 3.5 3 0 0 3 3 3 3 TrkA-C domain Na_sulph_symp PF00939.14 gi|433589891|ref|YP_007279387.1| - 6.7e-21 74.7 39.0 4.1e-13 49.0 10.4 3.0 2 1 1 3 3 3 3 Sodium:sulfate symporter transmembrane region DctM PF06808.7 gi|433589891|ref|YP_007279387.1| - 0.05 12.1 41.5 0.0072 14.9 13.1 2.3 2 0 0 2 2 2 0 DctM-like transporters DUF3592 PF12158.3 gi|433589891|ref|YP_007279387.1| - 0.38 10.5 4.5 18 5.0 0.4 3.4 2 2 1 3 3 3 0 Protein of unknown function (DUF3592) FAD_binding_3 PF01494.14 gi|433589892|ref|YP_007279388.1| - 4.3e-14 52.3 0.7 1.4e-10 40.7 0.0 2.9 3 0 0 3 3 3 2 FAD binding domain DAO PF01266.19 gi|433589892|ref|YP_007279388.1| - 9.2e-10 37.9 2.4 1.6e-05 24.0 0.3 2.2 1 1 0 2 2 2 2 FAD dependent oxidoreductase Lycopene_cycl PF05834.7 gi|433589892|ref|YP_007279388.1| - 5e-08 32.2 0.0 0.00097 18.1 0.0 2.2 2 0 0 2 2 2 2 Lycopene cyclase protein FAD_oxidored PF12831.2 gi|433589892|ref|YP_007279388.1| - 3.5e-05 23.0 0.5 4.8e-05 22.6 0.3 1.1 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|433589892|ref|YP_007279388.1| - 0.00016 21.6 0.0 0.002 18.0 0.0 2.0 1 1 1 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.9 gi|433589892|ref|YP_007279388.1| - 0.0063 15.1 0.0 0.015 13.9 0.0 1.5 2 0 0 2 2 2 1 Tryptophan halogenase HI0933_like PF03486.9 gi|433589892|ref|YP_007279388.1| - 0.014 13.8 0.0 0.14 10.5 0.0 2.0 2 0 0 2 2 2 0 HI0933-like protein MatE PF01554.13 gi|433589893|ref|YP_007279389.1| - 9.6e-40 135.8 27.7 2.7e-20 72.6 7.2 2.4 2 0 0 2 2 2 2 MatE Polysacc_synt_C PF14667.1 gi|433589893|ref|YP_007279389.1| - 1.3e-07 31.4 7.1 1.3e-07 31.4 4.9 4.6 3 1 1 4 4 4 2 Polysaccharide biosynthesis C-terminal domain N-glycanase_N PF09112.5 gi|433589893|ref|YP_007279389.1| - 0.13 11.6 0.0 0.2 10.9 0.0 1.2 1 0 0 1 1 1 0 Peptide-N-glycosidase F, N terminal DUF389 PF04087.9 gi|433589894|ref|YP_007279390.1| - 3.9e-31 107.8 21.2 3.9e-31 107.8 14.7 1.6 2 0 0 2 2 2 1 Domain of unknown function (DUF389) HTH_10 PF04967.7 gi|433589897|ref|YP_007279393.1| - 1.4e-17 62.9 0.0 3.2e-17 61.8 0.0 1.6 1 0 0 1 1 1 1 HTH DNA binding domain HTH_3 PF01381.17 gi|433589897|ref|YP_007279393.1| - 0.0014 18.4 0.0 0.0033 17.2 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix HTH_24 PF13412.1 gi|433589897|ref|YP_007279393.1| - 0.0038 16.5 0.0 0.0067 15.7 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TetR_N PF00440.18 gi|433589897|ref|YP_007279393.1| - 0.0054 16.3 0.7 0.011 15.3 0.0 2.0 2 0 0 2 2 2 1 Bacterial regulatory proteins, tetR family HTH_AsnC-type PF13404.1 gi|433589897|ref|YP_007279393.1| - 0.01 15.3 0.0 0.027 14.0 0.0 1.7 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain Sigma70_r4 PF04545.11 gi|433589897|ref|YP_007279393.1| - 0.013 14.7 0.3 0.013 14.7 0.2 1.7 2 0 0 2 2 2 0 Sigma-70, region 4 MarR_2 PF12802.2 gi|433589897|ref|YP_007279393.1| - 0.013 15.1 0.0 0.033 13.8 0.0 1.7 1 0 0 1 1 1 0 MarR family HTH_psq PF05225.11 gi|433589897|ref|YP_007279393.1| - 0.016 14.7 0.0 0.03 13.8 0.0 1.5 1 0 0 1 1 1 0 helix-turn-helix, Psq domain HTH_AraC PF00165.18 gi|433589897|ref|YP_007279393.1| - 0.018 14.8 0.0 0.043 13.6 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix proteins, AraC family Phage_CI_repr PF07022.8 gi|433589897|ref|YP_007279393.1| - 0.033 14.2 0.0 0.072 13.1 0.0 1.5 1 0 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain HTH_23 PF13384.1 gi|433589897|ref|YP_007279393.1| - 0.033 13.8 0.0 0.075 12.7 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain HTH_38 PF13936.1 gi|433589897|ref|YP_007279393.1| - 0.035 13.6 0.1 0.067 12.7 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain UPF0122 PF04297.9 gi|433589897|ref|YP_007279393.1| - 0.036 14.0 0.0 0.068 13.1 0.0 1.4 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like HTH_28 PF13518.1 gi|433589897|ref|YP_007279393.1| - 0.063 13.2 0.0 0.16 12.0 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_30 PF13556.1 gi|433589897|ref|YP_007279393.1| - 0.1 12.1 0.5 0.96 9.0 0.0 2.6 3 0 0 3 3 3 0 PucR C-terminal helix-turn-helix domain HTH_18 PF12833.2 gi|433589897|ref|YP_007279393.1| - 0.2 11.8 0.6 8 6.6 0.0 3.2 4 0 0 4 4 4 0 Helix-turn-helix domain Pterin_4a PF01329.14 gi|433589898|ref|YP_007279394.1| - 1.9e-20 72.4 0.0 2.1e-20 72.2 0.0 1.0 1 0 0 1 1 1 1 Pterin 4 alpha carbinolamine dehydratase Glyoxalase_2 PF12681.2 gi|433589901|ref|YP_007279397.1| - 5.7e-12 46.1 0.6 7.2e-12 45.8 0.4 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase PF00903.20 gi|433589901|ref|YP_007279397.1| - 2.6e-10 40.3 0.1 4.2e-10 39.6 0.1 1.3 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.1 gi|433589901|ref|YP_007279397.1| - 0.0014 18.5 0.1 0.0017 18.3 0.0 1.2 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Cupin_2 PF07883.6 gi|433589902|ref|YP_007279398.1| - 1.1e-19 69.6 1.0 1.5e-19 69.2 0.7 1.2 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.14 gi|433589902|ref|YP_007279398.1| - 8.9e-09 35.1 0.1 1.1e-08 34.8 0.1 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_3 PF05899.7 gi|433589902|ref|YP_007279398.1| - 3.4e-06 26.3 0.0 8.6e-06 25.0 0.0 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF861) Cupin_1 PF00190.17 gi|433589902|ref|YP_007279398.1| - 0.00028 20.3 0.0 0.00032 20.1 0.0 1.1 1 0 0 1 1 1 1 Cupin Cupin_7 PF12973.2 gi|433589902|ref|YP_007279398.1| - 0.00032 20.4 0.1 0.00061 19.5 0.0 1.5 1 0 0 1 1 1 1 ChrR Cupin-like domain AraC_binding_2 PF14525.1 gi|433589902|ref|YP_007279398.1| - 0.0012 18.4 0.1 0.0014 18.2 0.1 1.1 1 0 0 1 1 1 1 AraC-binding-like domain Ectoine_synth PF06339.7 gi|433589902|ref|YP_007279398.1| - 0.039 13.8 0.0 0.047 13.6 0.0 1.2 1 0 0 1 1 1 0 Ectoine synthase DUF1637 PF07847.7 gi|433589902|ref|YP_007279398.1| - 0.04 13.2 0.0 0.42 9.9 0.0 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF1637) Cupin_6 PF12852.2 gi|433589902|ref|YP_007279398.1| - 0.094 12.3 0.1 0.1 12.1 0.1 1.1 1 0 0 1 1 1 0 Cupin NMT1 PF09084.6 gi|433589903|ref|YP_007279399.1| - 1.2e-14 54.4 0.0 6.2e-08 32.4 0.0 2.8 2 1 0 2 2 2 2 NMT1/THI5 like NMT1_2 PF13379.1 gi|433589903|ref|YP_007279399.1| - 0.00012 21.6 0.0 0.0027 17.1 0.0 2.4 1 1 0 1 1 1 1 NMT1-like family SBP_bac_3 PF00497.15 gi|433589903|ref|YP_007279399.1| - 0.00035 19.9 0.0 0.00067 18.9 0.0 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 NMT1 PF09084.6 gi|433589904|ref|YP_007279400.1| - 2.3e-09 37.1 0.0 4.6e-09 36.2 0.0 1.4 1 1 0 1 1 1 1 NMT1/THI5 like Phosphonate-bd PF12974.2 gi|433589904|ref|YP_007279400.1| - 0.00015 21.2 0.0 0.00021 20.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein SBP_bac_3 PF00497.15 gi|433589904|ref|YP_007279400.1| - 0.00028 20.1 0.0 0.00052 19.3 0.0 1.5 1 1 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 NMT1 PF09084.6 gi|433589905|ref|YP_007279401.1| - 3.4e-33 115.0 0.0 5.1e-33 114.4 0.0 1.2 1 0 0 1 1 1 1 NMT1/THI5 like Phosphonate-bd PF12974.2 gi|433589905|ref|YP_007279401.1| - 8.3e-06 25.3 0.1 1.2e-05 24.7 0.1 1.4 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein NMT1_2 PF13379.1 gi|433589905|ref|YP_007279401.1| - 0.00016 21.1 0.1 0.0068 15.8 0.0 2.5 2 1 0 2 2 2 1 NMT1-like family PBP_like PF12727.2 gi|433589905|ref|YP_007279401.1| - 0.14 11.1 0.7 0.48 9.3 0.0 1.9 1 1 1 2 2 2 0 PBP superfamily domain HAD_2 PF13419.1 gi|433589906|ref|YP_007279402.1| - 7.3e-19 68.6 0.1 8.9e-19 68.3 0.1 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|433589906|ref|YP_007279402.1| - 0.016 14.9 0.1 0.037 13.7 0.0 1.7 2 0 0 2 2 2 0 HAD-hyrolase-like Hydrolase PF00702.21 gi|433589906|ref|YP_007279402.1| - 0.018 15.4 0.0 5.7 7.2 0.0 2.1 1 1 1 2 2 2 0 haloacid dehalogenase-like hydrolase NIF PF03031.13 gi|433589906|ref|YP_007279402.1| - 0.032 13.8 0.0 0.22 11.2 0.0 1.9 1 1 0 1 1 1 0 NLI interacting factor-like phosphatase GST_N_3 PF13417.1 gi|433589908|ref|YP_007279404.1| - 2.4e-10 40.5 0.0 2.9e-10 40.2 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N_2 PF13409.1 gi|433589908|ref|YP_007279404.1| - 1.1e-05 25.3 0.0 1.3e-05 25.0 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain Glutaredoxin PF00462.19 gi|433589908|ref|YP_007279404.1| - 0.00015 21.6 0.0 0.00039 20.3 0.0 1.9 1 1 1 2 2 2 1 Glutaredoxin GlutR_N PF05201.10 gi|433589909|ref|YP_007279405.1| - 1.3e-35 122.2 0.0 3.3e-35 120.9 0.0 1.7 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, N-terminal domain Shikimate_DH PF01488.15 gi|433589909|ref|YP_007279405.1| - 9.4e-32 109.9 0.2 1.9e-31 108.9 0.2 1.5 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase GlutR_dimer PF00745.15 gi|433589909|ref|YP_007279405.1| - 1.1e-21 76.6 4.9 2.6e-21 75.4 3.4 1.7 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, dimerisation domain F420_oxidored PF03807.12 gi|433589909|ref|YP_007279405.1| - 4.7e-06 26.9 0.3 2.6e-05 24.5 0.2 2.4 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.10 gi|433589909|ref|YP_007279405.1| - 3.1e-05 23.8 0.4 0.00012 21.9 0.1 2.2 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.14 gi|433589909|ref|YP_007279405.1| - 3.8e-05 22.9 0.1 7.4e-05 21.9 0.1 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_7 PF13241.1 gi|433589909|ref|YP_007279405.1| - 6.8e-05 23.0 0.5 0.00022 21.4 0.4 1.8 1 0 0 1 1 1 1 Putative NAD(P)-binding Saccharop_dh PF03435.13 gi|433589909|ref|YP_007279405.1| - 0.00026 20.1 1.2 0.00057 18.9 0.8 1.5 1 0 0 1 1 1 1 Saccharopine dehydrogenase AdoHcyase_NAD PF00670.16 gi|433589909|ref|YP_007279405.1| - 0.0011 18.8 0.1 0.0025 17.7 0.0 1.5 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain THF_DHG_CYH_C PF02882.14 gi|433589909|ref|YP_007279405.1| - 0.0083 15.2 0.9 0.5 9.4 0.2 3.2 2 2 0 2 2 2 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain ThiF PF00899.16 gi|433589909|ref|YP_007279405.1| - 0.037 13.8 0.4 0.037 13.8 0.3 2.8 3 1 1 4 4 4 0 ThiF family ApbA PF02558.11 gi|433589909|ref|YP_007279405.1| - 0.039 13.4 0.1 0.092 12.1 0.0 1.7 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA TrkA_N PF02254.13 gi|433589909|ref|YP_007279405.1| - 0.34 10.9 7.7 0.33 10.9 1.4 2.9 1 1 2 3 3 3 0 TrkA-N domain NAD_binding_7 PF13241.1 gi|433589910|ref|YP_007279406.1| - 6.3e-24 84.2 0.0 1.1e-23 83.4 0.0 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding TrkA_N PF02254.13 gi|433589910|ref|YP_007279406.1| - 0.0095 15.9 0.2 0.034 14.1 0.2 1.9 1 1 0 1 1 1 1 TrkA-N domain Sirohm_synth_M PF14824.1 gi|433589910|ref|YP_007279406.1| - 0.023 13.6 0.0 0.041 12.8 0.0 1.5 1 0 0 1 1 1 0 Sirohaem biosynthesis protein central PALP PF00291.20 gi|433589910|ref|YP_007279406.1| - 0.024 13.8 0.7 0.56 9.3 0.1 2.1 1 1 1 2 2 2 0 Pyridoxal-phosphate dependent enzyme NAD_binding_3 PF03447.11 gi|433589910|ref|YP_007279406.1| - 0.06 13.7 0.2 0.14 12.5 0.1 1.6 1 0 0 1 1 1 0 Homoserine dehydrogenase, NAD binding domain Aldo_ket_red PF00248.16 gi|433589911|ref|YP_007279407.1| - 0.12 11.2 0.0 0.65 8.7 0.0 2.1 3 0 0 3 3 3 0 Aldo/keto reductase family Prenyltransf PF01255.14 gi|433589913|ref|YP_007279409.1| - 1.3e-69 233.7 0.0 1.6e-69 233.4 0.0 1.1 1 0 0 1 1 1 1 Putative undecaprenyl diphosphate synthase Prenyltransf PF01255.14 gi|433589915|ref|YP_007279411.1| - 1.6e-27 96.1 0.0 8e-27 93.8 0.0 1.8 2 0 0 2 2 2 1 Putative undecaprenyl diphosphate synthase DUF92 PF01940.11 gi|433589916|ref|YP_007279412.1| - 4.2e-62 209.2 17.4 4.2e-62 209.2 12.1 2.4 2 1 0 2 2 2 1 Integral membrane protein DUF92 Toprim_4 PF13662.1 gi|433589918|ref|YP_007279414.1| - 2.6e-10 40.1 4.2 3.1e-10 39.9 0.5 2.8 3 1 0 3 3 3 1 Toprim domain Toprim_2 PF13155.1 gi|433589918|ref|YP_007279414.1| - 0.0058 16.9 0.0 0.011 16.0 0.0 1.5 1 0 0 1 1 1 1 Toprim-like Toprim PF01751.17 gi|433589918|ref|YP_007279414.1| - 0.013 15.4 0.2 0.054 13.4 0.1 2.2 1 1 0 1 1 1 0 Toprim domain HTH_10 PF04967.7 gi|433589920|ref|YP_007279416.1| - 1.5e-15 56.5 0.0 2.6e-15 55.7 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain HTH_3 PF01381.17 gi|433589920|ref|YP_007279416.1| - 0.00057 19.6 0.0 0.0011 18.7 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix TetR_N PF00440.18 gi|433589920|ref|YP_007279416.1| - 0.00059 19.4 0.0 0.0012 18.4 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family HTH_AraC PF00165.18 gi|433589920|ref|YP_007279416.1| - 0.001 18.7 0.0 0.02 14.7 0.0 2.5 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix proteins, AraC family MarR_2 PF12802.2 gi|433589920|ref|YP_007279416.1| - 0.005 16.4 0.0 0.012 15.2 0.0 1.7 1 0 0 1 1 1 1 MarR family Sigma70_r4 PF04545.11 gi|433589920|ref|YP_007279416.1| - 0.018 14.3 0.1 0.052 12.8 0.0 1.8 2 0 0 2 2 2 0 Sigma-70, region 4 DUF746 PF05344.6 gi|433589920|ref|YP_007279416.1| - 0.11 12.0 0.0 9.9 5.7 0.0 2.3 2 0 0 2 2 2 0 Domain of Unknown Function (DUF746) HTH_11 PF08279.7 gi|433589920|ref|YP_007279416.1| - 0.11 12.1 0.0 0.22 11.1 0.0 1.4 1 0 0 1 1 1 0 HTH domain DUF1419 PF07215.6 gi|433589920|ref|YP_007279416.1| - 0.11 12.3 0.5 1.6 8.6 0.3 2.4 1 1 0 1 1 1 0 Protein of unknown function (DUF1419) HTH_20 PF12840.2 gi|433589921|ref|YP_007279417.1| - 9.4e-17 60.5 0.0 1.7e-16 59.7 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|433589921|ref|YP_007279417.1| - 1.3e-07 30.9 0.0 2.1e-07 30.2 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|433589921|ref|YP_007279417.1| - 2.7e-06 26.9 0.0 4.6e-06 26.2 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|433589921|ref|YP_007279417.1| - 2.6e-05 23.7 0.0 5e-05 22.8 0.0 1.4 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|433589921|ref|YP_007279417.1| - 6.9e-05 22.4 0.0 0.00019 21.0 0.0 1.8 1 1 1 2 2 2 1 Sugar-specific transcriptional regulator TrmB FaeA PF04703.7 gi|433589921|ref|YP_007279417.1| - 0.0014 18.7 0.0 0.0027 17.8 0.0 1.4 1 0 0 1 1 1 1 FaeA-like protein MarR PF01047.17 gi|433589921|ref|YP_007279417.1| - 0.0079 15.8 0.0 0.014 15.0 0.0 1.3 1 0 0 1 1 1 1 MarR family DUF2513 PF10711.4 gi|433589921|ref|YP_007279417.1| - 0.032 14.3 0.0 0.052 13.6 0.0 1.3 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) Rrf2 PF02082.15 gi|433589921|ref|YP_007279417.1| - 0.054 13.6 0.0 0.094 12.8 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator HTH_34 PF13601.1 gi|433589921|ref|YP_007279417.1| - 0.066 13.2 0.0 0.17 11.9 0.0 1.6 1 1 1 2 2 2 0 Winged helix DNA-binding domain HTH_12 PF08461.5 gi|433589921|ref|YP_007279417.1| - 0.073 12.8 0.0 0.13 12.0 0.0 1.3 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain DUF2250 PF10007.4 gi|433589921|ref|YP_007279417.1| - 0.082 12.8 0.0 0.13 12.2 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) Fe_dep_repress PF01325.14 gi|433589921|ref|YP_007279417.1| - 0.091 12.7 0.0 0.16 11.8 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain Phage_rep_org_N PF09681.5 gi|433589921|ref|YP_007279417.1| - 0.1 12.1 0.0 0.16 11.5 0.0 1.2 1 0 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) DUF3311 PF11755.3 gi|433589922|ref|YP_007279418.1| - 1e-15 56.9 7.1 1.2e-15 56.8 4.9 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3311) DUF3382 PF11862.3 gi|433589922|ref|YP_007279418.1| - 0.13 12.1 4.0 0.26 11.2 2.8 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF3382) TRAP-gamma PF07074.7 gi|433589922|ref|YP_007279418.1| - 0.22 11.0 0.6 0.27 10.7 0.4 1.1 1 0 0 1 1 1 0 Translocon-associated protein, gamma subunit (TRAP-gamma) DUF4131 PF13567.1 gi|433589922|ref|YP_007279418.1| - 1.5 8.2 6.1 1.7 8.0 4.3 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) SSF PF00474.12 gi|433589923|ref|YP_007279419.1| - 5.6e-43 147.1 27.2 8.1e-43 146.5 18.9 1.2 1 0 0 1 1 1 1 Sodium:solute symporter family EspA PF03433.8 gi|433589924|ref|YP_007279420.1| - 0.046 13.1 0.0 0.07 12.5 0.0 1.2 1 0 0 1 1 1 0 EspA-like secreted protein COX7C PF02935.11 gi|433589925|ref|YP_007279421.1| - 0.035 13.9 1.0 0.073 12.8 0.7 1.5 1 0 0 1 1 1 0 Cytochrome c oxidase subunit VIIc DUF1538 PF07556.6 gi|433589925|ref|YP_007279421.1| - 0.035 13.2 3.3 0.04 13.0 2.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1538) NDUF_B12 PF08122.7 gi|433589925|ref|YP_007279421.1| - 6.9 6.4 7.7 5.7 6.7 0.6 2.1 1 1 1 2 2 2 0 NADH-ubiquinone oxidoreductase B12 subunit family UCR_Fe-S_N PF10399.4 gi|433589926|ref|YP_007279422.1| - 0.014 14.5 0.2 0.022 13.9 0.1 1.3 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal TAT_signal PF10518.4 gi|433589926|ref|YP_007279422.1| - 0.032 14.2 0.1 0.06 13.3 0.1 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence DUF1887 PF09002.6 gi|433589927|ref|YP_007279423.1| - 0.0068 14.8 0.0 0.013 13.9 0.0 1.6 1 1 1 2 2 2 1 Domain of unknown function (DUF1887) tRNA-synt_1 PF00133.17 gi|433589928|ref|YP_007279424.1| - 7.5e-125 417.2 0.0 5.1e-124 414.4 0.0 1.9 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.8 gi|433589928|ref|YP_007279424.1| - 4.1e-35 120.7 0.1 9.2e-35 119.6 0.1 1.6 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.6 gi|433589928|ref|YP_007279424.1| - 1.4e-24 86.5 0.5 7.2e-12 44.6 0.0 3.4 3 1 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1_2 PF13603.1 gi|433589928|ref|YP_007279424.1| - 2.1e-06 27.1 0.0 5.2e-06 25.8 0.0 1.6 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1e PF01406.14 gi|433589928|ref|YP_007279424.1| - 4.1e-05 22.8 0.0 0.0035 16.5 0.0 2.5 3 0 0 3 3 3 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.13 gi|433589928|ref|YP_007279424.1| - 0.0024 16.6 0.0 0.0065 15.1 0.0 1.7 1 0 0 1 1 1 1 tRNA synthetases class I (K) Lar_restr_allev PF14354.1 gi|433589928|ref|YP_007279424.1| - 0.18 12.1 3.5 8.3 6.8 0.6 3.4 2 1 0 2 2 2 0 Restriction alleviation protein Lar Zn-ribbon_8 PF09723.5 gi|433589928|ref|YP_007279424.1| - 5.8 6.9 7.2 48 4.0 3.2 2.9 2 1 0 2 2 2 0 Zinc ribbon domain DUF1405 PF07187.6 gi|433589929|ref|YP_007279425.1| - 2.2e-44 151.0 20.1 2.9e-44 150.7 14.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1405) Harakiri PF15196.1 gi|433589929|ref|YP_007279425.1| - 3.7 7.8 6.4 38 4.6 0.1 2.9 1 1 1 2 2 2 0 Activator of apoptosis harakiri SOR_SNZ PF01680.12 gi|433589930|ref|YP_007279426.1| - 6.4e-101 336.2 8.5 8.2e-101 335.9 5.9 1.1 1 0 0 1 1 1 1 SOR/SNZ family ThiG PF05690.9 gi|433589930|ref|YP_007279426.1| - 1.5e-09 37.3 3.6 1.6e-05 24.0 0.1 2.2 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG Dus PF01207.12 gi|433589930|ref|YP_007279426.1| - 0.0023 16.8 0.7 0.59 8.9 0.0 2.3 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) IGPS PF00218.16 gi|433589930|ref|YP_007279426.1| - 0.032 13.2 0.1 0.2 10.6 0.0 2.1 2 0 0 2 2 2 0 Indole-3-glycerol phosphate synthase MttA_Hcf106 PF02416.11 gi|433589930|ref|YP_007279426.1| - 0.034 13.2 1.9 0.56 9.3 0.0 2.8 3 0 0 3 3 3 0 mttA/Hcf106 family DDE_3 PF13358.1 gi|433589932|ref|YP_007279428.1| - 1.5e-27 96.1 0.0 3.1e-27 95.1 0.0 1.6 2 0 0 2 2 2 1 DDE superfamily endonuclease HTH_33 PF13592.1 gi|433589932|ref|YP_007279428.1| - 3e-23 81.1 0.6 1.1e-22 79.3 0.0 2.2 2 0 0 2 2 2 1 Winged helix-turn helix HTH_29 PF13551.1 gi|433589932|ref|YP_007279428.1| - 3.9e-21 75.3 0.1 7.8e-21 74.3 0.1 1.5 1 0 0 1 1 1 1 Winged helix-turn helix HTH_28 PF13518.1 gi|433589932|ref|YP_007279428.1| - 2e-10 40.4 1.0 2e-09 37.2 0.2 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_32 PF13565.1 gi|433589932|ref|YP_007279428.1| - 3.2e-10 40.6 3.2 5.2e-10 39.9 0.2 2.7 2 1 1 3 3 3 1 Homeodomain-like domain HTH_23 PF13384.1 gi|433589932|ref|YP_007279428.1| - 2.4e-05 23.8 0.0 5.7e-05 22.6 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain DDE_Tnp_ISAZ013 PF07592.6 gi|433589932|ref|YP_007279428.1| - 9e-05 21.3 0.0 0.0029 16.4 0.0 2.1 2 0 0 2 2 2 1 Rhodopirellula transposase DDE domain rve PF00665.21 gi|433589932|ref|YP_007279428.1| - 0.0027 17.7 0.0 0.0065 16.5 0.0 1.7 2 0 0 2 2 2 1 Integrase core domain HTH_Tnp_IS630 PF01710.11 gi|433589932|ref|YP_007279428.1| - 0.012 15.2 0.0 0.025 14.2 0.0 1.5 1 0 0 1 1 1 0 Transposase Sigma70_ECF PF07638.6 gi|433589932|ref|YP_007279428.1| - 0.021 14.4 0.1 0.055 13.1 0.0 1.7 2 0 0 2 2 2 0 ECF sigma factor DUF387 PF04079.11 gi|433589932|ref|YP_007279428.1| - 0.033 13.5 0.0 0.078 12.3 0.0 1.6 1 0 0 1 1 1 0 Putative transcriptional regulators (Ypuh-like) HTH_17 PF12728.2 gi|433589932|ref|YP_007279428.1| - 0.079 13.2 0.1 0.19 12.0 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_36 PF13730.1 gi|433589932|ref|YP_007279428.1| - 0.089 12.9 0.1 0.37 10.9 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain CBP4 PF07960.6 gi|433589932|ref|YP_007279428.1| - 0.18 11.4 1.8 1.6 8.3 1.0 2.1 2 0 0 2 2 2 0 CBP4 HTH_3 PF01381.17 gi|433589932|ref|YP_007279428.1| - 0.35 10.7 1.3 3.2 7.6 0.0 2.8 3 0 0 3 3 3 0 Helix-turn-helix GHMP_kinases_N PF00288.21 gi|433589933|ref|YP_007279429.1| - 1.2e-14 54.1 1.7 1.2e-14 54.1 1.2 1.8 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|433589933|ref|YP_007279429.1| - 1.7e-07 31.3 0.0 4.3e-07 30.0 0.0 1.8 1 0 0 1 1 1 1 GHMP kinases C terminal FlpD PF02662.11 gi|433589933|ref|YP_007279429.1| - 0.04 13.6 0.1 0.078 12.6 0.1 1.4 1 0 0 1 1 1 0 Methyl-viologen-reducing hydrogenase, delta subunit MCPsignal PF00015.16 gi|433589934|ref|YP_007279430.1| - 1e-35 123.1 81.2 3.5e-35 121.4 30.6 4.4 2 1 1 4 4 4 2 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.20 gi|433589934|ref|YP_007279430.1| - 2e-09 37.4 0.2 2e-09 37.4 0.1 5.5 8 0 0 8 8 8 2 HAMP domain TMP_2 PF06791.8 gi|433589934|ref|YP_007279430.1| - 0.0076 15.8 8.4 0.0076 15.8 5.8 4.4 2 1 1 4 4 4 1 Prophage tail length tape measure protein DUF1664 PF07889.7 gi|433589934|ref|YP_007279430.1| - 0.0094 15.7 2.7 0.0094 15.7 1.9 5.9 2 2 5 7 7 7 2 Protein of unknown function (DUF1664) DUF948 PF06103.6 gi|433589934|ref|YP_007279430.1| - 0.013 15.3 37.1 0.11 12.3 1.2 6.1 4 2 3 7 7 7 0 Bacterial protein of unknown function (DUF948) Laminin_II PF06009.7 gi|433589934|ref|YP_007279430.1| - 0.031 14.0 49.4 0.031 14.0 2.1 5.3 3 2 2 5 5 5 0 Laminin Domain II FxsA PF04186.8 gi|433589934|ref|YP_007279430.1| - 0.21 11.1 0.0 0.55 9.8 0.0 1.6 1 0 0 1 1 1 0 FxsA cytoplasmic membrane protein DASH_Duo1 PF08651.5 gi|433589934|ref|YP_007279430.1| - 1.8 8.1 13.9 0.2 11.2 1.0 4.7 3 1 1 4 4 4 0 DASH complex subunit Duo1 Seryl_tRNA_N PF02403.17 gi|433589934|ref|YP_007279430.1| - 6.1 6.9 50.8 2.4 8.2 4.5 6.1 1 1 5 6 6 6 0 Seryl-tRNA synthetase N-terminal domain Peripla_BP_6 PF13458.1 gi|433589935|ref|YP_007279431.1| - 1.5e-48 165.8 6.0 2e-48 165.5 4.1 1.1 1 0 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.23 gi|433589935|ref|YP_007279431.1| - 1.3e-20 73.5 0.1 1.8e-20 73.0 0.1 1.1 1 0 0 1 1 1 1 Receptor family ligand binding region Peripla_BP_5 PF13433.1 gi|433589935|ref|YP_007279431.1| - 9.6e-17 60.7 0.1 2.9e-15 55.8 0.1 2.7 1 1 0 1 1 1 1 Periplasmic binding protein domain TAT_signal PF10518.4 gi|433589935|ref|YP_007279431.1| - 0.0017 18.1 0.4 0.0062 16.4 0.3 2.0 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Peripla_BP_6 PF13458.1 gi|433589936|ref|YP_007279432.1| - 4e-42 144.7 5.3 5e-42 144.4 3.7 1.1 1 0 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.23 gi|433589936|ref|YP_007279432.1| - 6.3e-17 61.3 0.1 1.4e-16 60.2 0.1 1.5 1 1 0 1 1 1 1 Receptor family ligand binding region Peripla_BP_5 PF13433.1 gi|433589936|ref|YP_007279432.1| - 1.6e-13 50.2 0.2 7.5e-13 47.9 0.1 2.1 1 1 0 1 1 1 1 Periplasmic binding protein domain TAT_signal PF10518.4 gi|433589936|ref|YP_007279432.1| - 0.001 18.8 4.6 0.001 18.8 3.2 1.9 2 0 0 2 2 2 1 TAT (twin-arginine translocation) pathway signal sequence Peripla_BP_6 PF13458.1 gi|433589937|ref|YP_007279433.1| - 3.8e-50 171.1 5.2 5e-50 170.7 3.6 1.1 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_5 PF13433.1 gi|433589937|ref|YP_007279433.1| - 1.1e-24 86.9 1.0 4.8e-24 84.7 0.7 1.8 1 1 0 1 1 1 1 Periplasmic binding protein domain ANF_receptor PF01094.23 gi|433589937|ref|YP_007279433.1| - 1.5e-22 79.8 0.9 6.5e-22 77.7 0.6 1.8 1 1 0 1 1 1 1 Receptor family ligand binding region TAT_signal PF10518.4 gi|433589937|ref|YP_007279433.1| - 0.0068 16.3 6.6 0.0068 16.3 4.6 2.2 2 0 0 2 2 2 1 TAT (twin-arginine translocation) pathway signal sequence GHMP_kinases_C PF08544.8 gi|433589937|ref|YP_007279433.1| - 0.064 13.4 0.0 0.32 11.2 0.0 2.2 2 0 0 2 2 2 0 GHMP kinases C terminal MFS_1 PF07690.11 gi|433589938|ref|YP_007279434.1| - 6.7e-30 103.9 40.7 6.7e-30 103.9 28.2 2.0 1 1 1 2 2 2 1 Major Facilitator Superfamily DLH PF01738.13 gi|433589939|ref|YP_007279435.1| - 0.036 13.3 0.0 0.052 12.8 0.0 1.2 1 0 0 1 1 1 0 Dienelactone hydrolase family Pyr_redox_2 PF07992.9 gi|433589940|ref|YP_007279436.1| - 4.4e-33 114.8 0.2 5.8e-33 114.4 0.1 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|433589940|ref|YP_007279436.1| - 5.2e-12 45.9 0.3 4.7e-06 26.9 0.0 3.4 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|433589940|ref|YP_007279436.1| - 5.9e-06 26.4 2.6 0.0075 16.3 0.6 3.7 3 1 1 4 4 4 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|433589940|ref|YP_007279436.1| - 0.0013 18.7 1.0 0.075 13.0 0.0 2.9 3 0 0 3 3 3 1 NAD(P)-binding Rossmann-like domain DAO PF01266.19 gi|433589940|ref|YP_007279436.1| - 0.0029 16.5 4.5 0.36 9.6 0.0 3.3 4 0 0 4 4 4 2 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|433589940|ref|YP_007279436.1| - 0.0054 15.2 0.0 0.15 10.4 0.0 2.6 3 0 0 3 3 3 1 HI0933-like protein NAD_binding_9 PF13454.1 gi|433589940|ref|YP_007279436.1| - 0.014 15.1 4.7 0.99 9.1 0.0 3.1 4 0 0 4 4 4 0 FAD-NAD(P)-binding Lycopene_cycl PF05834.7 gi|433589940|ref|YP_007279436.1| - 0.3 9.9 1.2 1.1 8.0 0.0 2.3 3 0 0 3 3 3 0 Lycopene cyclase protein DUF4081 PF13312.1 gi|433589941|ref|YP_007279437.1| - 0.085 12.7 0.3 0.13 12.2 0.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4081) PSII_Pbs27 PF13326.1 gi|433589943|ref|YP_007279439.1| - 0.083 12.8 0.2 0.22 11.5 0.0 1.6 2 0 0 2 2 2 0 Photosystem II Pbs27 Abdominal-A PF12407.3 gi|433589943|ref|YP_007279439.1| - 1.3 8.6 3.5 2.3 7.8 2.5 1.4 1 0 0 1 1 1 0 Homeobox protein PAS PF00989.19 gi|433589944|ref|YP_007279440.1| - 8.3e-31 106.0 0.1 8.3e-19 67.4 0.0 3.2 3 0 0 3 3 3 2 PAS fold PAS_9 PF13426.1 gi|433589944|ref|YP_007279440.1| - 2.9e-27 95.0 0.1 5.6e-18 65.2 0.0 3.1 3 0 0 3 3 3 2 PAS domain PAS_8 PF13188.1 gi|433589944|ref|YP_007279440.1| - 3.6e-24 83.7 0.1 7.3e-13 47.8 0.0 3.0 2 0 0 2 2 2 2 PAS domain PAS_4 PF08448.5 gi|433589944|ref|YP_007279440.1| - 4.6e-24 84.5 10.6 7.7e-16 58.1 0.2 4.3 4 0 0 4 4 4 2 PAS fold HATPase_c PF02518.21 gi|433589944|ref|YP_007279440.1| - 1.1e-15 57.2 0.0 1.3e-14 53.8 0.0 2.2 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|433589944|ref|YP_007279440.1| - 1.4e-13 50.5 0.5 1.4e-13 50.5 0.4 3.8 5 0 0 5 5 5 1 His Kinase A (phospho-acceptor) domain PAS_3 PF08447.6 gi|433589944|ref|YP_007279440.1| - 5.5e-09 36.0 0.0 0.0051 16.8 0.0 2.7 2 0 0 2 2 2 2 PAS fold GAF_3 PF13492.1 gi|433589944|ref|YP_007279440.1| - 1.6e-06 28.2 0.1 5.7e-06 26.4 0.1 2.1 1 1 0 1 1 1 1 GAF domain GAF_2 PF13185.1 gi|433589944|ref|YP_007279440.1| - 9e-05 23.0 2.1 0.00048 20.6 1.5 2.4 1 1 0 1 1 1 1 GAF domain PAS_11 PF14598.1 gi|433589944|ref|YP_007279440.1| - 0.00011 22.0 0.0 0.008 16.1 0.0 2.3 2 0 0 2 2 2 1 PAS domain PAS_7 PF12860.2 gi|433589944|ref|YP_007279440.1| - 0.0063 16.5 2.7 4.1 7.4 0.0 3.8 4 1 0 4 4 4 2 PAS fold HATPase_c_3 PF13589.1 gi|433589944|ref|YP_007279440.1| - 0.12 12.0 0.0 0.26 10.9 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CPSase_L_D2 PF02786.12 gi|433589945|ref|YP_007279441.1| - 1.5e-96 321.7 0.2 3e-57 193.3 0.0 2.7 2 1 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_chain PF00289.17 gi|433589945|ref|YP_007279441.1| - 3.4e-46 155.8 0.2 3.7e-22 78.5 0.0 2.5 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, N-terminal domain ATP-grasp_4 PF13535.1 gi|433589945|ref|YP_007279441.1| - 5e-34 117.6 0.7 5.9e-19 68.5 0.0 2.9 3 0 0 3 3 3 2 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|433589945|ref|YP_007279441.1| - 6.9e-23 80.9 0.1 6.5e-13 48.1 0.0 3.9 3 1 0 3 3 3 3 ATP-grasp in the biosynthetic pathway with Ter operon CPSase_L_D3 PF02787.14 gi|433589945|ref|YP_007279441.1| - 1.9e-21 76.1 0.1 5.1e-21 74.6 0.0 1.8 2 0 0 2 2 2 1 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ATP-grasp_3 PF02655.9 gi|433589945|ref|YP_007279441.1| - 2.8e-12 46.8 0.1 3e-06 27.1 0.0 2.4 2 0 0 2 2 2 2 ATP-grasp domain Dala_Dala_lig_C PF07478.8 gi|433589945|ref|YP_007279441.1| - 5.2e-12 45.5 0.0 9.6e-09 34.9 0.0 2.6 2 1 0 2 2 2 2 D-ala D-ala ligase C-terminus ATP-grasp PF02222.17 gi|433589945|ref|YP_007279441.1| - 6.7e-12 45.1 0.0 1.4e-06 27.7 0.0 2.5 2 0 0 2 2 2 2 ATP-grasp domain RimK PF08443.6 gi|433589945|ref|YP_007279441.1| - 1.5e-05 24.5 0.0 0.00021 20.8 0.0 2.5 2 0 0 2 2 2 1 RimK-like ATP-grasp domain Abhydrolase_6 PF12697.2 gi|433589946|ref|YP_007279442.1| - 1.7e-39 136.0 9.6 2e-39 135.8 6.6 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|433589946|ref|YP_007279442.1| - 1.8e-20 73.1 0.0 3.9e-20 72.0 0.0 1.5 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|433589946|ref|YP_007279442.1| - 4.2e-15 55.9 0.0 1.3e-14 54.3 0.0 1.7 1 1 0 1 1 1 1 alpha/beta hydrolase fold Hydrolase_4 PF12146.3 gi|433589946|ref|YP_007279442.1| - 0.0027 17.5 0.0 0.0093 15.7 0.0 1.9 2 0 0 2 2 2 1 Putative lysophospholipase DLH PF01738.13 gi|433589946|ref|YP_007279442.1| - 0.0096 15.2 0.0 0.5 9.6 0.0 2.1 2 0 0 2 2 2 1 Dienelactone hydrolase family Thioesterase PF00975.15 gi|433589946|ref|YP_007279442.1| - 0.041 14.0 0.0 0.072 13.2 0.0 1.3 1 0 0 1 1 1 0 Thioesterase domain ABC_tran PF00005.22 gi|433589948|ref|YP_007279444.1| - 2.8e-29 102.1 0.0 3.6e-29 101.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|433589948|ref|YP_007279444.1| - 2.4e-12 47.4 0.0 9.3e-10 38.9 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|433589948|ref|YP_007279444.1| - 0.0079 15.6 0.3 0.014 14.9 0.2 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|433589948|ref|YP_007279444.1| - 0.015 15.6 1.3 0.043 14.1 0.1 1.9 1 1 1 2 2 2 0 AAA domain AAA_15 PF13175.1 gi|433589948|ref|YP_007279444.1| - 0.034 13.1 0.0 0.2 10.6 0.0 1.8 1 1 0 2 2 2 0 AAA ATPase domain SbcCD_C PF13558.1 gi|433589948|ref|YP_007279444.1| - 0.065 13.1 0.0 0.12 12.2 0.0 1.5 1 0 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_22 PF13401.1 gi|433589948|ref|YP_007279444.1| - 0.071 13.2 0.7 0.3 11.2 0.5 2.1 1 1 0 1 1 1 0 AAA domain AAA_13 PF13166.1 gi|433589948|ref|YP_007279444.1| - 0.074 11.5 0.1 0.49 8.8 0.0 1.9 1 1 0 2 2 2 0 AAA domain AAA_16 PF13191.1 gi|433589948|ref|YP_007279444.1| - 0.079 12.9 0.0 0.14 12.1 0.0 1.6 1 1 0 1 1 1 0 AAA ATPase domain AAA PF00004.24 gi|433589948|ref|YP_007279444.1| - 0.094 12.9 0.0 0.24 11.6 0.0 1.8 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.1 gi|433589948|ref|YP_007279444.1| - 0.11 12.1 0.3 0.24 10.9 0.2 1.5 1 0 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|433589948|ref|YP_007279444.1| - 0.12 13.1 0.2 0.37 11.6 0.2 2.0 1 1 0 1 1 1 0 AAA domain DUF3584 PF12128.3 gi|433589948|ref|YP_007279444.1| - 0.22 8.8 1.0 1.9 5.7 0.4 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3584) SRP54 PF00448.17 gi|433589948|ref|YP_007279444.1| - 0.31 10.4 1.3 0.52 9.7 0.9 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain DUF4140 PF13600.1 gi|433589948|ref|YP_007279444.1| - 0.38 11.2 0.2 0.38 11.2 0.1 1.8 2 0 0 2 2 1 0 N-terminal domain of unknown function (DUF4140) AAA_28 PF13521.1 gi|433589948|ref|YP_007279444.1| - 1.9 8.3 5.6 1 9.3 0.5 2.4 1 1 0 2 2 2 0 AAA domain Cupin_2 PF07883.6 gi|433589950|ref|YP_007279446.1| - 8.4e-08 31.6 0.4 1.2e-07 31.0 0.3 1.2 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.14 gi|433589950|ref|YP_007279446.1| - 0.026 14.2 0.0 0.033 13.8 0.0 1.2 1 0 0 1 1 1 0 AraC-like ligand binding domain AraC_binding_2 PF14525.1 gi|433589950|ref|YP_007279446.1| - 0.028 13.9 0.2 0.032 13.7 0.1 1.1 1 0 0 1 1 1 0 AraC-binding-like domain Pterin_bind PF00809.17 gi|433589951|ref|YP_007279447.1| - 1.1e-67 227.5 0.9 1.8e-67 226.7 0.7 1.4 1 0 0 1 1 1 1 Pterin binding enzyme Mur_ligase_M PF08245.7 gi|433589951|ref|YP_007279447.1| - 2.2e-11 44.1 0.0 4.1e-11 43.2 0.0 1.5 1 0 0 1 1 1 1 Mur ligase middle domain Mur_ligase_C PF02875.16 gi|433589951|ref|YP_007279447.1| - 5.7e-10 39.1 0.0 3.1e-09 36.7 0.0 2.3 2 0 0 2 2 2 1 Mur ligase family, glutamate ligase domain UvrD-helicase PF00580.16 gi|433589952|ref|YP_007279448.1| - 1.5e-46 159.1 0.0 2.4e-45 155.2 0.0 2.2 1 1 0 1 1 1 1 UvrD/REP helicase N-terminal domain UvrD_C PF13361.1 gi|433589952|ref|YP_007279448.1| - 3.6e-33 115.4 0.0 6e-33 114.7 0.0 1.4 1 0 0 1 1 1 1 UvrD-like helicase C-terminal domain PDDEXK_1 PF12705.2 gi|433589952|ref|YP_007279448.1| - 1e-28 100.4 0.1 3.1e-28 98.8 0.1 1.8 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily AAA_19 PF13245.1 gi|433589952|ref|YP_007279448.1| - 2.4e-09 36.7 3.3 3.5e-09 36.2 0.2 2.9 3 0 0 3 3 3 1 Part of AAA domain UvrD_C_2 PF13538.1 gi|433589952|ref|YP_007279448.1| - 4.5e-07 29.9 0.0 0.0039 17.3 0.0 3.3 3 0 0 3 3 3 2 UvrD-like helicase C-terminal domain AAA_12 PF13087.1 gi|433589952|ref|YP_007279448.1| - 0.0001 21.7 0.0 0.0089 15.4 0.0 2.8 3 0 0 3 3 3 1 AAA domain AAA_30 PF13604.1 gi|433589952|ref|YP_007279448.1| - 0.00033 20.3 0.1 0.00075 19.1 0.0 1.6 1 0 0 1 1 1 1 AAA domain DUF2800 PF10926.3 gi|433589952|ref|YP_007279448.1| - 0.00046 19.4 0.0 0.0011 18.1 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF2800) Viral_helicase1 PF01443.13 gi|433589952|ref|YP_007279448.1| - 0.02 14.4 0.0 0.41 10.1 0.0 2.7 3 0 0 3 3 3 0 Viral (Superfamily 1) RNA helicase PDDEXK_1 PF12705.2 gi|433589953|ref|YP_007279449.1| - 2.1e-08 33.8 0.2 0.00015 21.2 0.0 2.2 2 0 0 2 2 2 2 PD-(D/E)XK nuclease superfamily Exonuc_V_gamma PF04257.9 gi|433589954|ref|YP_007279450.1| - 0.22 9.4 0.0 0.3 9.0 0.0 1.1 1 0 0 1 1 1 0 Exodeoxyribonuclease V, gamma subunit CBS PF00571.23 gi|433589955|ref|YP_007279451.1| - 5.6e-33 112.4 8.4 3.3e-17 61.9 0.5 2.0 2 0 0 2 2 2 2 CBS domain DUF1056 PF06341.6 gi|433589957|ref|YP_007279453.1| - 0.87 9.6 4.9 1.2 9.1 0.2 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF1056) ABC_tran PF00005.22 gi|433589958|ref|YP_007279454.1| - 4e-21 75.7 0.0 4.1e-11 43.3 0.0 4.1 3 1 0 3 3 3 3 ABC transporter SMC_N PF02463.14 gi|433589958|ref|YP_007279454.1| - 1.5e-11 43.9 0.0 0.25 10.5 0.0 4.1 4 0 0 4 4 4 4 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|433589958|ref|YP_007279454.1| - 1.3e-08 34.2 0.0 0.0023 17.3 0.0 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_21 PF13304.1 gi|433589958|ref|YP_007279454.1| - 1.8e-08 34.6 7.3 0.015 15.3 0.0 4.2 4 0 0 4 4 4 2 AAA domain AAA_16 PF13191.1 gi|433589958|ref|YP_007279454.1| - 7.2e-07 29.3 0.1 0.0094 15.9 0.0 3.3 4 0 0 4 4 3 2 AAA ATPase domain AAA_22 PF13401.1 gi|433589958|ref|YP_007279454.1| - 2e-06 27.9 0.9 0.11 12.6 0.0 3.7 4 0 0 4 4 4 2 AAA domain AAA_25 PF13481.1 gi|433589958|ref|YP_007279454.1| - 2.3e-06 27.1 0.0 0.15 11.4 0.0 3.3 3 0 0 3 3 3 2 AAA domain AAA_14 PF13173.1 gi|433589958|ref|YP_007279454.1| - 5.1e-05 23.1 0.0 0.12 12.3 0.0 3.4 4 0 0 4 4 3 1 AAA domain AAA_10 PF12846.2 gi|433589958|ref|YP_007279454.1| - 0.0001 21.8 4.4 0.022 14.2 0.0 3.5 3 1 0 3 3 3 1 AAA-like domain KaiC PF06745.8 gi|433589958|ref|YP_007279454.1| - 0.00017 20.7 0.1 0.09 11.8 0.0 2.8 3 0 0 3 3 3 1 KaiC AAA_18 PF13238.1 gi|433589958|ref|YP_007279454.1| - 0.00019 21.7 0.1 0.57 10.4 0.0 3.4 3 0 0 3 3 2 1 AAA domain DnaJ_CXXCXGXG PF00684.14 gi|433589958|ref|YP_007279454.1| - 0.00033 20.6 14.0 0.0015 18.4 1.0 3.8 4 1 0 4 4 3 1 DnaJ central domain AAA_33 PF13671.1 gi|433589958|ref|YP_007279454.1| - 0.00035 20.4 0.0 0.91 9.3 0.0 3.3 3 0 0 3 3 3 2 AAA domain DUF258 PF03193.11 gi|433589958|ref|YP_007279454.1| - 0.00064 18.9 0.0 0.87 8.7 0.0 2.3 2 0 0 2 2 2 2 Protein of unknown function, DUF258 APS_kinase PF01583.15 gi|433589958|ref|YP_007279454.1| - 0.00079 19.1 0.1 0.9 9.1 0.0 2.7 2 0 0 2 2 2 2 Adenylylsulphate kinase AAA_23 PF13476.1 gi|433589958|ref|YP_007279454.1| - 0.0012 19.2 0.1 1.3 9.3 0.0 2.6 2 0 0 2 2 2 1 AAA domain cobW PF02492.14 gi|433589958|ref|YP_007279454.1| - 0.0025 17.3 0.1 0.15 11.5 0.0 2.4 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain AAA_17 PF13207.1 gi|433589958|ref|YP_007279454.1| - 0.0029 18.3 11.3 0.29 11.9 0.0 5.1 5 1 0 5 5 5 2 AAA domain DUF2075 PF09848.4 gi|433589958|ref|YP_007279454.1| - 0.0032 16.4 0.1 1.4 7.8 0.0 2.3 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) AAA_15 PF13175.1 gi|433589958|ref|YP_007279454.1| - 0.0056 15.7 0.0 1.7 7.6 0.0 2.8 4 0 0 4 4 4 1 AAA ATPase domain Viral_helicase1 PF01443.13 gi|433589958|ref|YP_007279454.1| - 0.0077 15.7 0.0 0.37 10.2 0.0 2.4 2 0 0 2 2 2 1 Viral (Superfamily 1) RNA helicase NACHT PF05729.7 gi|433589958|ref|YP_007279454.1| - 0.014 15.0 0.0 0.71 9.5 0.0 2.4 2 0 0 2 2 2 0 NACHT domain MobB PF03205.9 gi|433589958|ref|YP_007279454.1| - 0.016 14.9 0.2 0.67 9.6 0.0 2.8 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B Arch_ATPase PF01637.13 gi|433589958|ref|YP_007279454.1| - 0.018 14.7 0.0 4.3 6.9 0.0 2.5 2 0 0 2 2 2 0 Archaeal ATPase RNA_helicase PF00910.17 gi|433589958|ref|YP_007279454.1| - 0.051 13.7 0.0 1.7 8.8 0.0 2.4 2 0 0 2 2 2 0 RNA helicase MMR_HSR1 PF01926.18 gi|433589958|ref|YP_007279454.1| - 0.094 12.6 0.0 9.9 6.1 0.0 3.3 3 0 0 3 3 3 0 50S ribosome-binding GTPase Miro PF08477.8 gi|433589958|ref|YP_007279454.1| - 0.13 12.8 0.1 18 5.8 0.0 2.6 2 0 0 2 2 2 0 Miro-like protein NB-ARC PF00931.17 gi|433589958|ref|YP_007279454.1| - 0.26 10.0 0.1 2.7 6.7 0.0 2.6 3 0 0 3 3 3 0 NB-ARC domain BCA_ABC_TP_C PF12399.3 gi|433589958|ref|YP_007279454.1| - 0.29 10.8 3.4 2.3 8.0 0.3 3.1 3 0 0 3 3 3 0 Branched-chain amino acid ATP-binding cassette transporter Zn-ribbon_8 PF09723.5 gi|433589958|ref|YP_007279454.1| - 0.63 10.0 17.1 19 5.2 0.7 4.6 4 0 0 4 4 4 0 Zinc ribbon domain DZR PF12773.2 gi|433589958|ref|YP_007279454.1| - 4 7.3 10.5 4.5 7.1 0.3 3.9 4 0 0 4 4 4 0 Double zinc ribbon YhfH PF14149.1 gi|433589958|ref|YP_007279454.1| - 5.2 6.9 5.6 18 5.2 0.0 3.4 3 0 0 3 3 3 0 YhfH-like protein Prok-RING_1 PF14446.1 gi|433589959|ref|YP_007279455.1| - 0.0022 17.7 1.2 0.0027 17.3 0.9 1.1 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 zf-RING_3 PF14369.1 gi|433589959|ref|YP_007279455.1| - 0.057 13.4 0.0 0.096 12.7 0.0 1.5 1 0 0 1 1 1 0 zinc-finger zf-Di19 PF05605.7 gi|433589959|ref|YP_007279455.1| - 0.15 12.1 0.9 0.17 12.0 0.6 1.3 1 1 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding DDE_Tnp_1 PF01609.16 gi|433589960|ref|YP_007279456.1| - 1.3e-25 90.1 0.0 1.8e-25 89.7 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_2 PF04693.7 gi|433589960|ref|YP_007279456.1| - 0.0012 17.9 0.1 0.0018 17.3 0.1 1.2 1 0 0 1 1 1 1 Archaeal putative transposase ISC1217 DDE_Tnp_1_2 PF13586.1 gi|433589960|ref|YP_007279456.1| - 0.0082 16.3 0.0 0.023 14.8 0.0 1.7 1 0 0 1 1 1 1 Transposase DDE domain DUF2249 PF10006.4 gi|433589960|ref|YP_007279456.1| - 0.022 14.3 0.2 0.067 12.7 0.1 1.9 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2249) DZR PF12773.2 gi|433589961|ref|YP_007279457.1| - 0.0016 18.2 7.8 0.29 10.9 5.4 2.8 1 1 0 1 1 1 1 Double zinc ribbon RNA_POL_M_15KD PF02150.11 gi|433589961|ref|YP_007279457.1| - 0.016 14.8 3.6 0.05 13.2 0.0 2.9 3 1 0 3 3 3 0 RNA polymerases M/15 Kd subunit zf-RING_3 PF14369.1 gi|433589961|ref|YP_007279457.1| - 0.017 15.1 1.2 0.017 15.1 0.8 3.1 2 1 1 3 3 3 0 zinc-finger RNHCP PF12647.2 gi|433589961|ref|YP_007279457.1| - 0.083 12.7 0.6 0.083 12.7 0.4 2.0 2 1 0 2 2 2 0 RNHCP domain zf-C4_Topoisom PF01396.14 gi|433589961|ref|YP_007279457.1| - 0.09 12.3 2.9 0.37 10.3 0.0 2.4 3 0 0 3 3 3 0 Topoisomerase DNA binding C4 zinc finger Zn-ribbon_8 PF09723.5 gi|433589961|ref|YP_007279457.1| - 0.1 12.5 5.7 0.24 11.3 0.4 2.9 3 0 0 3 3 3 0 Zinc ribbon domain zf-C2HC5 PF06221.8 gi|433589961|ref|YP_007279457.1| - 0.49 10.1 6.0 0.63 9.8 0.3 2.9 2 1 1 3 3 3 0 Putative zinc finger motif, C2HC5-type zf-ribbon_3 PF13248.1 gi|433589961|ref|YP_007279457.1| - 1.5 8.1 13.5 19 4.6 0.1 3.9 3 1 0 3 3 3 0 zinc-ribbon domain YhfH PF14149.1 gi|433589961|ref|YP_007279457.1| - 2.2 8.1 7.0 19 5.1 0.1 3.8 4 0 0 4 4 4 0 YhfH-like protein zf-C3HC4_3 PF13920.1 gi|433589961|ref|YP_007279457.1| - 4.1 7.1 10.6 9.7 5.9 4.0 2.8 2 1 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) zf-RING_4 PF14570.1 gi|433589961|ref|YP_007279457.1| - 8 6.1 10.6 56 3.4 5.0 2.7 2 1 0 2 2 2 0 RING/Ubox like zinc-binding domain CSD PF00313.17 gi|433589962|ref|YP_007279458.1| - 6.8e-17 61.0 0.2 9e-17 60.6 0.1 1.2 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain S1-like PF14444.1 gi|433589962|ref|YP_007279458.1| - 0.011 15.4 0.5 0.019 14.6 0.3 1.6 1 1 0 1 1 1 0 S1-like OB_RNB PF08206.6 gi|433589962|ref|YP_007279458.1| - 0.31 10.5 2.7 0.44 10.0 1.9 1.3 1 0 0 1 1 1 0 Ribonuclease B OB domain Usp PF00582.21 gi|433589963|ref|YP_007279459.1| - 2.8e-11 43.7 7.4 3.6e-10 40.1 0.5 2.6 2 1 0 2 2 2 2 Universal stress protein family TrkA_N PF02254.13 gi|433589964|ref|YP_007279460.1| - 1.3e-24 86.4 1.2 1.3e-24 86.4 0.8 1.5 2 0 0 2 2 2 1 TrkA-N domain TrkA_C PF02080.16 gi|433589964|ref|YP_007279460.1| - 1.9e-14 53.0 1.0 1.9e-14 53.0 0.7 2.1 2 0 0 2 2 2 1 TrkA-C domain Saccharop_dh PF03435.13 gi|433589964|ref|YP_007279460.1| - 1.5e-06 27.4 0.5 2.1e-06 26.9 0.4 1.1 1 0 0 1 1 1 1 Saccharopine dehydrogenase NmrA PF05368.8 gi|433589964|ref|YP_007279460.1| - 3.2e-05 23.2 0.2 7.8e-05 22.0 0.1 1.6 1 1 0 1 1 1 1 NmrA-like family NAD_binding_10 PF13460.1 gi|433589964|ref|YP_007279460.1| - 0.0001 22.3 0.8 0.00027 21.0 0.1 1.9 2 0 0 2 2 2 1 NADH(P)-binding Shikimate_DH PF01488.15 gi|433589964|ref|YP_007279460.1| - 0.00031 20.8 0.1 0.00045 20.3 0.1 1.3 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase F420_oxidored PF03807.12 gi|433589964|ref|YP_007279460.1| - 0.00033 21.0 0.1 0.00084 19.7 0.1 1.7 2 0 0 2 2 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_7 PF13241.1 gi|433589964|ref|YP_007279460.1| - 0.0059 16.8 0.1 0.0098 16.1 0.1 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding DAO PF01266.19 gi|433589964|ref|YP_007279460.1| - 0.0063 15.4 0.1 0.01 14.7 0.1 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase AlaDh_PNT_C PF01262.16 gi|433589964|ref|YP_007279460.1| - 0.0084 15.6 0.2 0.016 14.8 0.1 1.5 1 1 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain XdhC_C PF13478.1 gi|433589964|ref|YP_007279460.1| - 0.011 16.0 0.2 0.036 14.3 0.0 2.0 2 1 0 2 2 2 0 XdhC Rossmann domain 3HCDH_N PF02737.13 gi|433589964|ref|YP_007279460.1| - 0.022 14.3 0.1 0.033 13.8 0.1 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_8 PF13450.1 gi|433589964|ref|YP_007279460.1| - 0.023 14.7 0.0 0.089 12.8 0.0 2.0 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain Thi4 PF01946.12 gi|433589964|ref|YP_007279460.1| - 0.028 13.5 0.1 0.039 13.0 0.1 1.3 1 0 0 1 1 1 0 Thi4 family TrkH PF02386.11 gi|433589965|ref|YP_007279461.1| - 2.2e-55 187.6 13.8 1.3e-54 185.0 5.5 2.2 2 0 0 2 2 2 2 Cation transport protein DUF3767 PF12597.3 gi|433589965|ref|YP_007279461.1| - 0.36 10.5 1.7 1.4 8.6 0.2 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3767) TrkA_N PF02254.13 gi|433589966|ref|YP_007279462.1| - 2.4e-25 88.7 1.1 4e-25 88.0 0.7 1.4 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.16 gi|433589966|ref|YP_007279462.1| - 3.1e-15 55.5 0.6 1e-14 53.8 0.1 2.0 2 0 0 2 2 2 1 TrkA-C domain Saccharop_dh PF03435.13 gi|433589966|ref|YP_007279462.1| - 1.2e-05 24.4 0.3 1.4e-05 24.2 0.2 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase F420_oxidored PF03807.12 gi|433589966|ref|YP_007279462.1| - 2.7e-05 24.5 0.1 5e-05 23.6 0.1 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent XdhC_C PF13478.1 gi|433589966|ref|YP_007279462.1| - 0.00047 20.4 0.0 0.00067 19.9 0.0 1.3 1 0 0 1 1 1 1 XdhC Rossmann domain NAD_binding_10 PF13460.1 gi|433589966|ref|YP_007279462.1| - 0.00053 20.0 0.4 0.00077 19.5 0.3 1.4 1 0 0 1 1 1 1 NADH(P)-binding NAD_binding_7 PF13241.1 gi|433589966|ref|YP_007279462.1| - 0.0016 18.6 0.2 0.0027 17.9 0.1 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding ThiF PF00899.16 gi|433589966|ref|YP_007279462.1| - 0.0079 16.0 1.6 2.7 7.8 0.1 2.3 1 1 1 2 2 2 2 ThiF family NAD_binding_2 PF03446.10 gi|433589966|ref|YP_007279462.1| - 0.01 15.7 0.1 0.022 14.5 0.0 1.5 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase Pyr_redox PF00070.22 gi|433589966|ref|YP_007279462.1| - 0.021 15.2 0.2 0.096 13.1 0.3 2.0 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase UDPG_MGDP_dh_N PF03721.9 gi|433589966|ref|YP_007279462.1| - 0.023 14.0 0.1 0.036 13.4 0.1 1.4 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Shikimate_DH PF01488.15 gi|433589966|ref|YP_007279462.1| - 0.049 13.7 0.1 0.08 13.0 0.1 1.5 1 1 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase NmrA PF05368.8 gi|433589966|ref|YP_007279462.1| - 0.053 12.7 0.2 0.1 11.8 0.1 1.5 1 1 0 1 1 1 0 NmrA-like family 3HCDH_N PF02737.13 gi|433589966|ref|YP_007279462.1| - 0.054 13.1 0.1 0.073 12.7 0.1 1.2 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain PEP-utilizers PF00391.18 gi|433589966|ref|YP_007279462.1| - 0.091 12.3 0.4 0.35 10.4 0.1 2.2 1 1 1 2 2 2 0 PEP-utilising enzyme, mobile domain Usp PF00582.21 gi|433589967|ref|YP_007279463.1| - 1e-14 54.9 0.2 1.3e-14 54.5 0.1 1.2 1 0 0 1 1 1 1 Universal stress protein family CSTF2_hinge PF14327.1 gi|433589968|ref|YP_007279464.1| - 0.0056 16.7 0.0 0.0072 16.3 0.0 1.1 1 0 0 1 1 1 1 Hinge domain of cleavage stimulation factor subunit 2 TrkA_C PF02080.16 gi|433589969|ref|YP_007279465.1| - 4.3e-11 42.2 0.4 1.2e-10 40.7 0.2 1.8 2 0 0 2 2 2 1 TrkA-C domain HTH_24 PF13412.1 gi|433589969|ref|YP_007279465.1| - 3.8e-08 32.5 0.2 6.8e-08 31.7 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|433589969|ref|YP_007279465.1| - 1.5e-06 27.5 0.4 2.8e-06 26.7 0.3 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.7 gi|433589969|ref|YP_007279465.1| - 2.2e-06 27.1 0.1 4.8e-06 26.1 0.1 1.6 1 0 0 1 1 1 1 HTH domain HTH_5 PF01022.15 gi|433589969|ref|YP_007279465.1| - 8.8e-06 25.3 0.0 1.8e-05 24.2 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_DeoR PF08220.7 gi|433589969|ref|YP_007279465.1| - 4.4e-05 22.9 0.2 0.00052 19.5 0.0 2.3 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain MarR_2 PF12802.2 gi|433589969|ref|YP_007279465.1| - 0.00015 21.3 0.0 0.00031 20.3 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|433589969|ref|YP_007279465.1| - 0.00034 20.3 0.0 0.00079 19.1 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain Fe_dep_repress PF01325.14 gi|433589969|ref|YP_007279465.1| - 0.0017 18.2 0.0 0.0076 16.1 0.0 2.1 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain MarR PF01047.17 gi|433589969|ref|YP_007279465.1| - 0.0049 16.5 0.0 0.0087 15.7 0.0 1.4 1 0 0 1 1 1 1 MarR family Rrf2 PF02082.15 gi|433589969|ref|YP_007279465.1| - 0.0069 16.4 0.0 0.015 15.3 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator HTH_27 PF13463.1 gi|433589969|ref|YP_007279465.1| - 0.015 15.5 0.2 0.061 13.6 0.0 2.0 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_IclR PF09339.5 gi|433589969|ref|YP_007279465.1| - 0.03 13.8 0.0 0.058 12.9 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_23 PF13384.1 gi|433589969|ref|YP_007279465.1| - 0.049 13.3 0.0 0.1 12.2 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain HTH_28 PF13518.1 gi|433589969|ref|YP_007279465.1| - 0.081 12.9 0.0 0.16 11.9 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HrcA_DNA-bdg PF03444.10 gi|433589969|ref|YP_007279465.1| - 0.11 11.9 0.0 0.19 11.1 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding DDRGK PF09756.4 gi|433589969|ref|YP_007279465.1| - 0.11 11.8 0.0 0.18 11.1 0.0 1.3 1 0 0 1 1 1 0 DDRGK domain GntR PF00392.16 gi|433589969|ref|YP_007279465.1| - 0.22 10.9 1.7 0.38 10.2 0.0 2.2 3 0 0 3 3 3 0 Bacterial regulatory proteins, gntR family Spc7 PF08317.6 gi|433589970|ref|YP_007279466.1| - 0.0056 15.3 0.2 0.0072 15.0 0.1 1.1 1 0 0 1 1 1 1 Spc7 kinetochore protein T4SS PF07996.6 gi|433589970|ref|YP_007279466.1| - 0.031 14.1 3.8 0.063 13.1 2.7 1.5 1 0 0 1 1 1 0 Type IV secretion system proteins Pup PF05639.6 gi|433589970|ref|YP_007279466.1| - 0.046 14.2 0.3 0.046 14.2 0.2 2.6 2 1 0 2 2 2 0 Pup-like protein Spectrin PF00435.16 gi|433589970|ref|YP_007279466.1| - 0.046 14.0 4.4 10 6.4 2.0 2.6 2 1 1 3 3 3 0 Spectrin repeat DUF4559 PF15112.1 gi|433589970|ref|YP_007279466.1| - 0.064 12.4 1.6 0.081 12.0 1.1 1.2 1 1 0 1 1 1 0 Domain of unknown function (DUF4559) DUF2694 PF10904.3 gi|433589970|ref|YP_007279466.1| - 0.1 12.6 0.8 0.21 11.5 0.5 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2694) Apolipoprotein PF01442.13 gi|433589970|ref|YP_007279466.1| - 0.17 11.3 9.0 4.7 6.6 6.2 2.2 1 1 0 1 1 1 0 Apolipoprotein A1/A4/E domain DUF3250 PF11618.3 gi|433589970|ref|YP_007279466.1| - 0.18 12.0 0.5 0.64 10.2 0.1 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3250) Sec2p PF06428.6 gi|433589970|ref|YP_007279466.1| - 0.24 11.2 5.9 0.25 11.2 1.1 2.6 2 1 1 3 3 3 0 GDP/GTP exchange factor Sec2p DUF848 PF05852.6 gi|433589970|ref|YP_007279466.1| - 0.28 11.0 5.3 5 6.9 1.4 2.1 1 1 1 2 2 2 0 Gammaherpesvirus protein of unknown function (DUF848) SlyX PF04102.7 gi|433589970|ref|YP_007279466.1| - 0.31 11.4 3.1 11 6.4 0.0 2.5 2 0 0 2 2 2 0 SlyX OmpH PF03938.9 gi|433589970|ref|YP_007279466.1| - 1.1 9.1 7.6 2.9 7.7 5.3 1.7 1 1 0 1 1 1 0 Outer membrane protein (OmpH-like) FUSC PF04632.7 gi|433589970|ref|YP_007279466.1| - 1.7 7.0 7.7 2.1 6.6 5.4 1.2 1 0 0 1 1 1 0 Fusaric acid resistance protein family IncA PF04156.9 gi|433589970|ref|YP_007279466.1| - 1.7 8.1 5.4 8.1 5.9 3.7 1.9 1 1 0 1 1 1 0 IncA protein MerR-DNA-bind PF09278.6 gi|433589970|ref|YP_007279466.1| - 1.8 9.0 6.4 24 5.3 2.0 2.6 2 1 0 2 2 2 0 MerR, DNA binding DUF3073 PF11273.3 gi|433589970|ref|YP_007279466.1| - 10 6.7 6.4 2.9 8.4 0.6 2.6 2 1 1 3 3 3 0 Protein of unknown function (DUF3073) Ribonuc_red_sm PF00268.16 gi|433589971|ref|YP_007279467.1| - 0.013 14.5 0.5 0.039 12.9 0.4 1.7 1 1 0 1 1 1 0 Ribonucleotide reductase, small chain Aminotran_5 PF00266.14 gi|433589972|ref|YP_007279468.1| - 4.2e-56 190.2 0.0 4.8e-39 134.1 0.0 2.2 1 1 1 2 2 2 2 Aminotransferase class-V Cys_Met_Meta_PP PF01053.15 gi|433589972|ref|YP_007279468.1| - 0.095 10.9 0.0 0.16 10.2 0.0 1.2 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme Cu-oxidase_3 PF07732.10 gi|433589973|ref|YP_007279469.1| - 3.9e-08 33.0 0.0 2.7e-07 30.3 0.0 2.2 2 1 0 2 2 2 1 Multicopper oxidase Cu-oxidase_2 PF07731.9 gi|433589973|ref|YP_007279469.1| - 9.3e-07 28.4 0.1 3.5e-06 26.5 0.0 2.1 2 1 0 2 2 2 1 Multicopper oxidase Herpes_LMP1 PF05297.6 gi|433589974|ref|YP_007279470.1| - 0.32 9.8 3.4 0.49 9.2 2.3 1.2 1 0 0 1 1 1 0 Herpesvirus latent membrane protein 1 (LMP1) PapC_C PF13953.1 gi|433589975|ref|YP_007279471.1| - 0.09 12.4 0.1 0.14 11.7 0.1 1.3 1 0 0 1 1 1 0 PapC C-terminal domain RHH_1 PF01402.16 gi|433589976|ref|YP_007279472.1| - 0.015 15.1 0.3 0.031 14.1 0.2 1.5 1 1 0 1 1 1 0 Ribbon-helix-helix protein, copG family RepB-RCR_reg PF10723.4 gi|433589976|ref|YP_007279472.1| - 0.015 14.9 0.0 0.017 14.8 0.0 1.1 1 0 0 1 1 1 0 Replication regulatory protein RepB DUF217 PF02697.9 gi|433589976|ref|YP_007279472.1| - 0.031 14.5 0.0 0.033 14.4 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized ACR, COG1753 DUF892 PF05974.7 gi|433589976|ref|YP_007279472.1| - 0.092 12.5 0.1 0.092 12.5 0.1 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF892) PqqD PF05402.7 gi|433589976|ref|YP_007279472.1| - 0.11 12.5 0.1 0.17 11.9 0.1 1.4 1 1 0 1 1 1 0 Coenzyme PQQ synthesis protein D (PqqD) TIM PF00121.13 gi|433589977|ref|YP_007279473.1| - 4.1e-05 22.7 0.0 6.8e-05 22.0 0.0 1.3 1 0 0 1 1 1 1 Triosephosphate isomerase QRPTase_C PF01729.14 gi|433589977|ref|YP_007279473.1| - 0.00034 20.1 0.0 0.00052 19.5 0.0 1.3 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain His_biosynth PF00977.16 gi|433589977|ref|YP_007279473.1| - 0.00059 19.1 0.0 0.0014 17.9 0.0 1.6 2 0 0 2 2 2 1 Histidine biosynthesis protein Fe-ADH PF00465.14 gi|433589977|ref|YP_007279473.1| - 0.01 14.4 0.1 0.01 14.4 0.1 1.4 2 0 0 2 2 2 0 Iron-containing alcohol dehydrogenase DUF336 PF03928.9 gi|433589977|ref|YP_007279473.1| - 0.014 15.2 0.2 0.12 12.1 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF336) ThiG PF05690.9 gi|433589977|ref|YP_007279473.1| - 0.021 13.8 1.1 0.03 13.3 0.1 1.6 2 0 0 2 2 2 0 Thiazole biosynthesis protein ThiG AFOR_C PF01314.13 gi|433589977|ref|YP_007279473.1| - 0.036 12.7 0.0 0.047 12.3 0.0 1.1 1 0 0 1 1 1 0 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 FMN_dh PF01070.13 gi|433589977|ref|YP_007279473.1| - 0.052 12.3 2.1 0.13 11.0 0.3 2.0 2 0 0 2 2 2 0 FMN-dependent dehydrogenase Glu_synthase PF01645.12 gi|433589977|ref|YP_007279473.1| - 0.14 11.0 0.2 0.25 10.1 0.1 1.3 1 0 0 1 1 1 0 Conserved region in glutamate synthase Usp PF00582.21 gi|433589978|ref|YP_007279474.1| - 1.6e-30 106.1 1.2 1.8e-30 105.9 0.8 1.0 1 0 0 1 1 1 1 Universal stress protein family DAO PF01266.19 gi|433589979|ref|YP_007279475.1| - 2.1e-11 43.3 0.3 7.4e-05 21.8 0.1 2.3 1 1 1 2 2 2 2 FAD dependent oxidoreductase Lycopene_cycl PF05834.7 gi|433589979|ref|YP_007279475.1| - 1.3e-09 37.4 0.0 7.5e-09 34.9 0.0 1.8 2 0 0 2 2 2 1 Lycopene cyclase protein FAD_binding_3 PF01494.14 gi|433589979|ref|YP_007279475.1| - 6.6e-09 35.2 0.1 1.7e-07 30.6 0.0 2.2 1 1 0 1 1 1 1 FAD binding domain Trp_halogenase PF04820.9 gi|433589979|ref|YP_007279475.1| - 3.7e-08 32.4 0.0 0.0004 19.1 0.0 2.5 3 0 0 3 3 3 2 Tryptophan halogenase Pyr_redox_2 PF07992.9 gi|433589979|ref|YP_007279475.1| - 3.2e-06 27.1 0.3 9.2e-06 25.6 0.1 1.9 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.2 gi|433589979|ref|YP_007279475.1| - 7.3e-06 25.3 5.2 0.00011 21.4 2.2 2.8 2 1 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|433589979|ref|YP_007279475.1| - 1.5e-05 24.0 0.1 2.7e-05 23.2 0.1 1.4 1 1 0 1 1 1 1 FAD binding domain Thi4 PF01946.12 gi|433589979|ref|YP_007279475.1| - 7.2e-05 21.9 0.1 0.00028 20.0 0.0 1.9 2 0 0 2 2 2 1 Thi4 family HI0933_like PF03486.9 gi|433589979|ref|YP_007279475.1| - 0.00012 20.6 0.0 0.00076 18.0 0.1 1.9 2 0 0 2 2 2 1 HI0933-like protein GIDA PF01134.17 gi|433589979|ref|YP_007279475.1| - 0.00014 20.8 0.0 0.02 13.7 0.0 2.2 2 0 0 2 2 2 2 Glucose inhibited division protein A NAD_binding_8 PF13450.1 gi|433589979|ref|YP_007279475.1| - 0.0016 18.3 0.2 0.0063 16.5 0.1 2.0 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain CPSase_L_chain PF00289.17 gi|433589979|ref|YP_007279475.1| - 0.029 14.4 0.0 0.059 13.4 0.0 1.5 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, N-terminal domain 3HCDH_N PF02737.13 gi|433589979|ref|YP_007279475.1| - 0.03 13.9 0.0 0.048 13.3 0.0 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TrkA_N PF02254.13 gi|433589979|ref|YP_007279475.1| - 0.14 12.1 0.1 0.76 9.7 0.0 2.0 2 0 0 2 2 2 0 TrkA-N domain TrkA_N PF02254.13 gi|433589980|ref|YP_007279476.1| - 1.2e-44 151.0 12.6 1.2e-22 80.0 0.3 3.4 3 0 0 3 3 3 2 TrkA-N domain TrkA_C PF02080.16 gi|433589980|ref|YP_007279476.1| - 1.1e-20 73.0 0.7 2.2e-10 40.0 0.1 3.2 2 0 0 2 2 2 2 TrkA-C domain Ion_trans_2 PF07885.11 gi|433589980|ref|YP_007279476.1| - 0.0016 18.0 1.2 0.0031 17.1 0.8 1.4 1 0 0 1 1 1 1 Ion channel AdoHcyase_NAD PF00670.16 gi|433589980|ref|YP_007279476.1| - 0.0039 17.0 0.7 0.013 15.3 0.3 2.0 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain NAD_binding_7 PF13241.1 gi|433589980|ref|YP_007279476.1| - 0.016 15.4 3.3 0.023 14.9 0.4 2.4 2 1 0 2 2 2 0 Putative NAD(P)-binding Thi4 PF01946.12 gi|433589980|ref|YP_007279476.1| - 0.057 12.5 2.3 0.13 11.2 0.2 2.4 2 1 0 2 2 2 0 Thi4 family HI0933_like PF03486.9 gi|433589980|ref|YP_007279476.1| - 0.22 9.9 0.4 0.34 9.3 0.3 1.3 1 0 0 1 1 1 0 HI0933-like protein Zip PF02535.17 gi|433589981|ref|YP_007279477.1| - 4e-23 81.9 18.1 1.1e-21 77.2 3.5 2.8 1 1 1 2 2 2 2 ZIP Zinc transporter Usp PF00582.21 gi|433589982|ref|YP_007279478.1| - 1.6e-31 109.3 2.8 1.8e-31 109.2 1.9 1.0 1 0 0 1 1 1 1 Universal stress protein family IlvB_leader PF08049.6 gi|433589982|ref|YP_007279478.1| - 0.2 11.4 1.8 0.49 10.1 1.3 1.6 1 0 0 1 1 1 0 IlvB leader peptide DUF3956 PF13104.1 gi|433589983|ref|YP_007279479.1| - 0.5 9.9 4.0 0.49 9.9 1.3 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3956) YbhQ PF11076.3 gi|433589983|ref|YP_007279479.1| - 3.8 7.1 8.0 0.1 12.1 0.6 1.9 2 1 0 2 2 2 0 Putative inner membrane protein YbhQ Isochorismatase PF00857.15 gi|433589984|ref|YP_007279480.1| - 1.4e-35 122.8 0.0 1.6e-35 122.5 0.0 1.0 1 0 0 1 1 1 1 Isochorismatase family Stathmin PF00836.14 gi|433589984|ref|YP_007279480.1| - 0.055 13.0 0.0 0.11 12.1 0.0 1.4 1 0 0 1 1 1 0 Stathmin family TIR_2 PF13676.1 gi|433589984|ref|YP_007279480.1| - 0.12 12.5 0.0 0.26 11.4 0.0 1.5 1 0 0 1 1 1 0 TIR domain YqcI_YcgG PF08892.6 gi|433589985|ref|YP_007279481.1| - 4.6e-74 248.6 0.0 5.4e-74 248.4 0.0 1.0 1 0 0 1 1 1 1 YqcI/YcgG family DUF2071 PF09844.4 gi|433589986|ref|YP_007279482.1| - 1.6e-63 214.0 0.0 1.8e-63 213.8 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (COG2071) ADC PF06314.6 gi|433589986|ref|YP_007279482.1| - 0.0042 16.4 0.2 0.0053 16.1 0.2 1.1 1 0 0 1 1 1 1 Acetoacetate decarboxylase (ADC) adh_short PF00106.20 gi|433589987|ref|YP_007279483.1| - 2.9e-27 95.6 1.7 3.4e-27 95.3 1.1 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|433589987|ref|YP_007279483.1| - 2.3e-14 53.7 0.0 4.7e-13 49.4 0.0 2.0 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|433589987|ref|YP_007279483.1| - 7.9e-11 41.9 0.7 1.1e-10 41.4 0.5 1.1 1 0 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|433589987|ref|YP_007279483.1| - 0.0014 18.1 0.1 0.0016 17.9 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.1 gi|433589987|ref|YP_007279483.1| - 0.0021 18.0 0.2 0.0032 17.5 0.1 1.3 1 0 0 1 1 1 1 NADH(P)-binding Usp PF00582.21 gi|433589988|ref|YP_007279484.1| - 4.6e-21 75.4 0.6 5.3e-21 75.2 0.4 1.0 1 0 0 1 1 1 1 Universal stress protein family HeH PF12949.2 gi|433589988|ref|YP_007279484.1| - 0.15 11.6 0.1 0.26 10.8 0.1 1.4 1 0 0 1 1 1 0 HeH/LEM domain Usp PF00582.21 gi|433589989|ref|YP_007279485.1| - 2.4e-16 60.2 1.5 2.6e-16 60.0 1.0 1.0 1 0 0 1 1 1 1 Universal stress protein family ROK PF00480.15 gi|433589991|ref|YP_007279487.1| - 5.2e-28 98.0 0.2 6.8e-28 97.6 0.2 1.2 1 0 0 1 1 1 1 ROK family BcrAD_BadFG PF01869.15 gi|433589991|ref|YP_007279487.1| - 7.7e-05 22.1 1.4 0.00049 19.4 0.4 2.1 2 0 0 2 2 2 1 BadF/BadG/BcrA/BcrD ATPase family FGGY_N PF00370.16 gi|433589991|ref|YP_007279487.1| - 0.026 13.8 0.0 0.095 11.9 0.0 1.9 1 1 0 1 1 1 0 FGGY family of carbohydrate kinases, N-terminal domain OrfB_Zn_ribbon PF07282.6 gi|433589992|ref|YP_007279488.1| - 1.9e-20 72.3 1.5 4.2e-20 71.1 1.1 1.7 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|433589992|ref|YP_007279488.1| - 0.0071 15.7 0.6 0.016 14.6 0.4 1.5 1 0 0 1 1 1 1 Probable transposase HTH_OrfB_IS605 PF12323.3 gi|433589992|ref|YP_007279488.1| - 0.061 12.6 0.2 0.19 11.0 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain LVIVD PF08309.6 gi|433589993|ref|YP_007279489.1| - 3.7e-14 51.4 9.6 5.9e-06 25.1 0.4 6.3 6 1 0 6 6 6 4 LVIVD repeat DUF1513 PF07433.6 gi|433589993|ref|YP_007279489.1| - 0.013 14.3 0.0 0.021 13.7 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1513) SBP56 PF05694.6 gi|433589993|ref|YP_007279489.1| - 0.017 13.6 0.7 3.8 5.9 0.0 3.7 4 0 0 4 4 4 0 56kDa selenium binding protein (SBP56) NifU PF01106.12 gi|433589994|ref|YP_007279490.1| - 8e-08 31.9 0.1 1.1e-07 31.5 0.1 1.2 1 0 0 1 1 1 1 NifU-like domain ACT PF01842.20 gi|433589995|ref|YP_007279491.1| - 3e-05 23.4 0.7 0.00033 20.0 0.0 2.7 2 1 1 3 3 3 1 ACT domain TPR_4 PF07721.9 gi|433589995|ref|YP_007279491.1| - 0.023 15.0 0.3 0.078 13.4 0.1 2.0 2 0 0 2 2 2 0 Tetratricopeptide repeat DUF4349 PF14257.1 gi|433589995|ref|YP_007279491.1| - 0.034 13.3 0.0 0.17 11.1 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4349) Homoserine_dh PF00742.14 gi|433589996|ref|YP_007279492.1| - 3.9e-50 169.9 0.1 5.9e-50 169.4 0.1 1.3 1 0 0 1 1 1 1 Homoserine dehydrogenase ELFV_dehydrog PF00208.16 gi|433589996|ref|YP_007279492.1| - 1.8e-06 27.7 0.0 3.6e-06 26.7 0.0 1.5 2 0 0 2 2 2 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase NAD_binding_3 PF03447.11 gi|433589996|ref|YP_007279492.1| - 4e-06 27.1 0.1 8.9e-06 26.0 0.1 1.6 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain NAD_binding_10 PF13460.1 gi|433589996|ref|YP_007279492.1| - 0.00045 20.2 0.4 0.00093 19.2 0.3 1.5 1 0 0 1 1 1 1 NADH(P)-binding 3HCDH_N PF02737.13 gi|433589996|ref|YP_007279492.1| - 0.014 15.0 0.1 0.023 14.3 0.1 1.4 1 1 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|433589996|ref|YP_007279492.1| - 0.017 14.3 0.0 0.026 13.6 0.0 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|433589996|ref|YP_007279492.1| - 0.018 15.4 0.0 0.064 13.6 0.0 2.1 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent XdhC_C PF13478.1 gi|433589996|ref|YP_007279492.1| - 0.058 13.6 0.0 0.096 12.9 0.0 1.5 1 0 0 1 1 1 0 XdhC Rossmann domain TrkA_N PF02254.13 gi|433589996|ref|YP_007279492.1| - 0.07 13.1 0.0 0.29 11.1 0.0 2.0 2 0 0 2 2 2 0 TrkA-N domain NAD_Gly3P_dh_N PF01210.18 gi|433589996|ref|YP_007279492.1| - 0.11 12.2 0.0 0.21 11.3 0.0 1.4 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus GTP_EFTU PF00009.22 gi|433589997|ref|YP_007279493.1| - 1.7e-58 197.1 0.1 2.3e-58 196.7 0.0 1.1 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.12 gi|433589997|ref|YP_007279493.1| - 8e-31 106.1 0.1 3.1e-30 104.2 0.0 2.0 2 0 0 2 2 2 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.20 gi|433589997|ref|YP_007279493.1| - 1.5e-17 63.4 1.9 4.3e-17 61.9 0.6 2.3 2 0 0 2 2 2 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|433589997|ref|YP_007279493.1| - 4.1e-07 29.9 0.0 7.9e-07 29.0 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase Miro PF08477.8 gi|433589997|ref|YP_007279493.1| - 2.4e-05 24.8 0.1 0.00048 20.5 0.0 2.9 2 1 0 2 2 2 1 Miro-like protein GTP_EFTU_D4 PF14578.1 gi|433589997|ref|YP_007279493.1| - 0.00018 21.0 0.1 0.00079 19.0 0.0 2.0 2 0 0 2 2 2 1 Elongation factor Tu domain 4 Gtr1_RagA PF04670.7 gi|433589997|ref|YP_007279493.1| - 0.00046 19.4 0.1 0.047 12.8 0.0 2.2 2 0 0 2 2 2 1 Gtr1/RagA G protein conserved region Dynamin_N PF00350.18 gi|433589997|ref|YP_007279493.1| - 0.0042 16.9 0.1 1.1 9.0 0.0 2.5 1 1 0 1 1 1 1 Dynamin family FeoB_N PF02421.13 gi|433589997|ref|YP_007279493.1| - 0.012 14.8 0.1 0.32 10.2 0.1 2.6 2 1 0 2 2 2 0 Ferrous iron transport protein B SRPRB PF09439.5 gi|433589997|ref|YP_007279493.1| - 0.015 14.4 0.0 0.75 8.9 0.0 2.3 1 1 1 2 2 2 0 Signal recognition particle receptor beta subunit CbiA PF01656.18 gi|433589997|ref|YP_007279493.1| - 0.058 12.7 0.1 0.13 11.6 0.0 1.6 1 0 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain Ribosomal_S10 PF00338.17 gi|433589998|ref|YP_007279494.1| - 1.6e-28 98.3 0.0 1.8e-28 98.2 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e Rhomboid PF01694.17 gi|433589999|ref|YP_007279495.1| - 3.6e-19 69.2 9.2 3.6e-19 69.2 6.4 1.7 2 0 0 2 2 2 1 Rhomboid family DUF1751 PF08551.5 gi|433589999|ref|YP_007279495.1| - 0.21 11.9 2.2 0.43 10.9 0.0 2.4 3 0 0 3 3 3 0 Eukaryotic integral membrane protein (DUF1751) Big_3_4 PF13754.1 gi|433590001|ref|YP_007279497.1| - 0.0017 18.6 1.0 0.6 10.4 0.0 3.6 3 1 1 4 4 4 2 Bacterial Ig-like domain (group 3) Acetyltransf_6 PF13480.1 gi|433590002|ref|YP_007279498.1| - 1.8e-10 40.9 4.2 1.8e-10 40.9 2.9 1.9 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain FemAB PF02388.11 gi|433590002|ref|YP_007279498.1| - 1.5e-07 30.4 0.4 1.1e-06 27.5 0.1 2.0 1 1 0 2 2 2 1 FemAB family DUF482 PF04339.7 gi|433590002|ref|YP_007279498.1| - 1.2e-06 27.6 0.0 0.026 13.4 0.0 2.1 2 0 0 2 2 2 2 Protein of unknown function, DUF482 HTH_10 PF04967.7 gi|433590003|ref|YP_007279499.1| - 1.3e-18 66.2 0.1 5.6e-18 64.2 0.0 2.0 2 0 0 2 2 2 1 HTH DNA binding domain Sigma70_r4 PF04545.11 gi|433590003|ref|YP_007279499.1| - 6.1e-06 25.4 0.3 5.3e-05 22.4 0.2 2.6 2 1 0 2 2 2 1 Sigma-70, region 4 Sigma70_r4_2 PF08281.7 gi|433590003|ref|YP_007279499.1| - 1.1e-05 24.8 1.4 9.9e-05 21.7 0.1 2.9 2 1 0 2 2 2 1 Sigma-70, region 4 GerE PF00196.14 gi|433590003|ref|YP_007279499.1| - 8.7e-05 21.7 0.0 0.033 13.5 0.0 2.2 2 0 0 2 2 2 2 Bacterial regulatory proteins, luxR family MarR_2 PF12802.2 gi|433590003|ref|YP_007279499.1| - 0.001 18.6 0.2 0.011 15.4 0.0 2.7 3 0 0 3 3 3 1 MarR family HTH_24 PF13412.1 gi|433590003|ref|YP_007279499.1| - 0.0014 17.9 0.0 0.0037 16.6 0.0 1.8 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_38 PF13936.1 gi|433590003|ref|YP_007279499.1| - 0.0027 17.2 0.0 0.011 15.2 0.0 2.1 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|433590003|ref|YP_007279499.1| - 0.0096 15.5 0.0 0.026 14.1 0.0 1.8 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|433590003|ref|YP_007279499.1| - 0.011 15.5 0.0 0.027 14.2 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_11 PF08279.7 gi|433590003|ref|YP_007279499.1| - 0.02 14.5 0.0 0.11 12.1 0.0 2.1 2 0 0 2 2 2 0 HTH domain HTH_23 PF13384.1 gi|433590003|ref|YP_007279499.1| - 0.044 13.4 0.2 0.22 11.2 0.1 2.1 2 0 0 2 2 2 0 Homeodomain-like domain HrcA_DNA-bdg PF03444.10 gi|433590003|ref|YP_007279499.1| - 0.087 12.2 0.0 0.16 11.4 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding DNA_binding_1 PF01035.15 gi|433590003|ref|YP_007279499.1| - 0.1 12.3 0.0 0.22 11.2 0.0 1.6 1 0 0 1 1 1 0 6-O-methylguanine DNA methyltransferase, DNA binding domain DUF4112 PF13430.1 gi|433590004|ref|YP_007279500.1| - 0.034 14.0 0.4 0.034 14.0 0.3 2.1 2 1 0 2 2 2 0 Domain of unknown function (DUF4112) GPDPase_memb PF10110.4 gi|433590004|ref|YP_007279500.1| - 0.05 13.0 0.1 0.88 8.9 0.0 2.3 1 1 1 2 2 2 0 Membrane domain of glycerophosphoryl diester phosphodiesterase PQQ_2 PF13360.1 gi|433590005|ref|YP_007279501.1| - 8.4e-36 123.6 15.3 6.2e-27 94.5 6.2 4.1 1 1 1 2 2 2 2 PQQ-like domain PQQ_3 PF13570.1 gi|433590005|ref|YP_007279501.1| - 2.9e-29 100.4 35.3 5.5e-06 26.4 0.3 8.5 8 0 0 8 8 8 7 PQQ-like domain PQQ PF01011.16 gi|433590005|ref|YP_007279501.1| - 4.9e-17 60.5 9.2 1.3e-06 27.6 0.0 6.7 7 0 0 7 7 7 3 PQQ enzyme repeat Kelch_1 PF01344.20 gi|433590005|ref|YP_007279501.1| - 0.016 14.7 0.5 0.21 11.1 0.0 3.1 3 0 0 3 3 3 0 Kelch motif Ribosomal_S24e PF01282.14 gi|433590006|ref|YP_007279502.1| - 4.7e-27 93.6 0.4 5.9e-27 93.2 0.3 1.1 1 0 0 1 1 1 1 Ribosomal protein S24e Ribosomal_S27 PF01599.14 gi|433590007|ref|YP_007279503.1| - 4e-13 48.9 3.5 4.5e-13 48.7 2.4 1.1 1 0 0 1 1 1 1 Ribosomal protein S27a RNA_POL_M_15KD PF02150.11 gi|433590007|ref|YP_007279503.1| - 0.0016 18.0 1.0 0.0026 17.4 0.7 1.3 1 0 0 1 1 1 1 RNA polymerases M/15 Kd subunit IBR PF01485.16 gi|433590007|ref|YP_007279503.1| - 0.011 15.6 0.5 0.011 15.6 0.3 1.1 1 0 0 1 1 1 0 IBR domain FYVE PF01363.16 gi|433590007|ref|YP_007279503.1| - 0.019 14.8 1.1 0.022 14.6 0.8 1.1 1 0 0 1 1 1 0 FYVE zinc finger Ribosomal_L37e PF01907.14 gi|433590007|ref|YP_007279503.1| - 0.042 13.6 0.8 0.053 13.3 0.6 1.3 1 0 0 1 1 1 0 Ribosomal protein L37e Nudix_N_2 PF14803.1 gi|433590007|ref|YP_007279503.1| - 0.065 12.9 7.2 0.93 9.2 0.6 2.1 1 1 1 2 2 2 0 Nudix N-terminal zinc-ribbons_6 PF07191.7 gi|433590007|ref|YP_007279503.1| - 0.087 12.6 1.1 0.11 12.3 0.8 1.1 1 0 0 1 1 1 0 zinc-ribbons zinc_ribbon_5 PF13719.1 gi|433590007|ref|YP_007279503.1| - 0.12 12.0 3.4 0.35 10.4 0.1 2.2 1 1 1 2 2 1 0 zinc-ribbon domain zf-ISL3 PF14690.1 gi|433590007|ref|YP_007279503.1| - 0.15 12.1 0.2 0.15 12.1 0.1 1.9 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DZR PF12773.2 gi|433590007|ref|YP_007279503.1| - 0.15 11.8 2.5 0.24 11.2 1.7 1.3 1 1 0 1 1 1 0 Double zinc ribbon RNHCP PF12647.2 gi|433590007|ref|YP_007279503.1| - 0.17 11.7 3.3 0.36 10.6 2.2 1.5 1 1 0 1 1 1 0 RNHCP domain zinc_ribbon_4 PF13717.1 gi|433590007|ref|YP_007279503.1| - 0.18 11.5 3.6 0.59 9.8 0.1 2.2 1 1 1 2 2 1 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|433590007|ref|YP_007279503.1| - 0.2 11.2 2.9 1.1 8.8 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-CSL PF05207.8 gi|433590007|ref|YP_007279503.1| - 0.41 10.1 3.9 1.1 8.7 2.7 1.7 1 1 0 1 1 1 0 CSL zinc finger Auto_anti-p27 PF06677.7 gi|433590007|ref|YP_007279503.1| - 0.5 10.1 4.0 0.94 9.2 2.8 1.5 1 1 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) UPF0547 PF10571.4 gi|433590007|ref|YP_007279503.1| - 0.71 9.6 3.2 1.3 8.8 0.1 2.1 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 TF_Zn_Ribbon PF08271.7 gi|433590007|ref|YP_007279503.1| - 1 8.7 4.0 1.8 7.9 2.2 1.9 1 1 1 2 2 2 0 TFIIB zinc-binding Fer4_6 PF12837.2 gi|433590007|ref|YP_007279503.1| - 1.5 8.7 3.6 14 5.7 0.2 2.1 2 0 0 2 2 2 0 4Fe-4S binding domain DUF2082 PF09855.4 gi|433590007|ref|YP_007279503.1| - 2.8 7.8 5.6 5.3 6.9 0.3 2.7 2 1 1 3 3 3 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) zf-ribbon_3 PF13248.1 gi|433590007|ref|YP_007279503.1| - 5 6.4 6.1 29 4.0 4.2 2.0 1 1 0 1 1 1 0 zinc-ribbon domain Peptidase_M22 PF00814.20 gi|433590008|ref|YP_007279504.1| - 1.4e-75 254.2 0.0 1.9e-75 253.8 0.0 1.1 1 0 0 1 1 1 1 Glycoprotease family APH PF01636.18 gi|433590008|ref|YP_007279504.1| - 9.6e-05 22.2 18.5 0.0013 18.4 12.8 2.8 1 1 0 1 1 1 1 Phosphotransferase enzyme family Kdo PF06293.9 gi|433590008|ref|YP_007279504.1| - 0.00011 21.3 0.0 0.00021 20.4 0.0 1.4 1 0 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family Pkinase PF00069.20 gi|433590008|ref|YP_007279504.1| - 0.075 12.1 0.0 0.11 11.5 0.0 1.2 1 0 0 1 1 1 0 Protein kinase domain Pkinase_Tyr PF07714.12 gi|433590008|ref|YP_007279504.1| - 0.09 11.8 0.0 0.13 11.3 0.0 1.1 1 0 0 1 1 1 0 Protein tyrosine kinase RIO1 PF01163.17 gi|433590008|ref|YP_007279504.1| - 0.13 11.5 0.0 0.24 10.7 0.0 1.5 1 0 0 1 1 1 0 RIO1 family Complex1_49kDa PF00346.14 gi|433590010|ref|YP_007279506.1| - 7e-67 225.2 0.0 4.2e-43 147.2 0.0 2.1 1 1 1 2 2 2 2 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Complex1_30kDa PF00329.14 gi|433590010|ref|YP_007279506.1| - 3e-31 107.7 0.1 5e-31 106.9 0.0 1.4 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit HTH_10 PF04967.7 gi|433590011|ref|YP_007279507.1| - 9.3e-17 60.3 0.0 1.4e-16 59.8 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain Ham1p_like PF01725.11 gi|433590012|ref|YP_007279508.1| - 1.2e-50 171.5 0.0 1.4e-50 171.3 0.0 1.0 1 0 0 1 1 1 1 Ham1 family IMPDH PF00478.20 gi|433590013|ref|YP_007279509.1| - 1.1e-111 373.1 3.1 1.5e-111 372.7 2.2 1.2 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain NMO PF03060.10 gi|433590013|ref|YP_007279509.1| - 7.8e-08 31.8 16.1 1.3e-05 24.5 11.1 2.3 1 1 0 1 1 1 1 Nitronate monooxygenase His_biosynth PF00977.16 gi|433590013|ref|YP_007279509.1| - 1.6e-06 27.5 1.2 0.00018 20.8 0.0 2.4 2 0 0 2 2 2 2 Histidine biosynthesis protein FMN_dh PF01070.13 gi|433590013|ref|YP_007279509.1| - 1.7e-05 23.8 12.9 0.00016 20.6 8.9 2.0 1 1 0 1 1 1 1 FMN-dependent dehydrogenase Glu_synthase PF01645.12 gi|433590013|ref|YP_007279509.1| - 0.0023 16.9 4.1 0.0023 16.9 2.8 1.8 1 1 1 2 2 2 1 Conserved region in glutamate synthase DHO_dh PF01180.16 gi|433590013|ref|YP_007279509.1| - 0.0027 16.7 0.9 0.0063 15.5 0.6 1.5 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase TMP-TENI PF02581.12 gi|433590013|ref|YP_007279509.1| - 0.003 16.6 3.9 0.0052 15.9 2.7 1.4 1 0 0 1 1 1 1 Thiamine monophosphate synthase/TENI PcrB PF01884.12 gi|433590013|ref|YP_007279509.1| - 0.0095 15.2 0.4 0.0095 15.2 0.3 2.2 2 1 0 2 2 2 1 PcrB family QRPTase_C PF01729.14 gi|433590013|ref|YP_007279509.1| - 0.014 14.8 3.3 0.042 13.3 0.6 2.3 2 0 0 2 2 2 0 Quinolinate phosphoribosyl transferase, C-terminal domain IGPS PF00218.16 gi|433590013|ref|YP_007279509.1| - 0.018 14.1 1.5 0.19 10.7 0.1 2.6 2 1 1 3 3 3 0 Indole-3-glycerol phosphate synthase Aldolase PF01081.14 gi|433590013|ref|YP_007279509.1| - 0.035 13.2 4.3 0.09 11.9 0.7 2.5 1 1 0 2 2 2 0 KDPG and KHG aldolase NanE PF04131.9 gi|433590013|ref|YP_007279509.1| - 0.074 12.0 5.2 0.49 9.3 2.7 2.8 1 1 1 2 2 2 0 Putative N-acetylmannosamine-6-phosphate epimerase ThiG PF05690.9 gi|433590013|ref|YP_007279509.1| - 0.72 8.8 7.3 0.049 12.6 1.2 1.8 2 0 0 2 2 2 0 Thiazole biosynthesis protein ThiG PIN_3 PF13470.1 gi|433590014|ref|YP_007279510.1| - 0.0015 19.2 2.4 0.0073 16.9 1.7 1.9 1 1 0 1 1 1 1 PIN domain MCPsignal PF00015.16 gi|433590017|ref|YP_007279513.1| - 3.1e-33 115.1 48.6 3.1e-31 108.5 21.6 3.0 1 1 2 3 3 3 2 Methyl-accepting chemotaxis protein (MCP) signalling domain IncA PF04156.9 gi|433590017|ref|YP_007279513.1| - 6.7e-05 22.5 24.8 0.0003 20.4 4.0 3.9 1 1 1 2 2 2 1 IncA protein Laminin_II PF06009.7 gi|433590017|ref|YP_007279513.1| - 0.0031 17.2 2.0 0.0031 17.2 1.4 4.3 3 2 2 5 5 5 2 Laminin Domain II Alpha-2-MRAP_C PF06401.6 gi|433590017|ref|YP_007279513.1| - 0.008 16.0 0.5 0.021 14.7 0.1 1.8 1 1 0 1 1 1 1 Alpha-2-macroglobulin RAP, C-terminal domain ISG65-75 PF11727.3 gi|433590017|ref|YP_007279513.1| - 0.015 14.3 24.1 0.11 11.5 1.6 3.8 3 1 1 4 4 4 0 Invariant surface glycoprotein DUF16 PF01519.11 gi|433590017|ref|YP_007279513.1| - 0.035 14.3 11.7 0.087 13.0 0.3 4.0 2 2 1 3 3 3 0 Protein of unknown function DUF16 HAMP PF00672.20 gi|433590017|ref|YP_007279513.1| - 0.061 13.5 0.7 0.061 13.5 0.5 6.6 8 1 0 8 8 8 0 HAMP domain Syntaxin PF00804.20 gi|433590017|ref|YP_007279513.1| - 1.5 9.0 16.8 19 5.4 1.3 4.4 1 1 2 3 3 3 0 Syntaxin Reo_sigmaC PF04582.7 gi|433590017|ref|YP_007279513.1| - 3.1 6.8 17.8 1.3 8.1 1.5 2.8 2 1 0 2 2 2 0 Reovirus sigma C capsid protein DUF1664 PF07889.7 gi|433590017|ref|YP_007279513.1| - 3.5 7.4 15.2 1.8 8.4 0.3 4.4 4 1 1 5 5 5 0 Protein of unknown function (DUF1664) Spc7 PF08317.6 gi|433590017|ref|YP_007279513.1| - 9.4 4.7 15.2 5.9 5.4 3.7 3.0 2 2 0 2 2 2 0 Spc7 kinetochore protein HNOB PF07700.10 gi|433590018|ref|YP_007279514.1| - 1e-26 93.4 0.0 1.2e-26 93.2 0.0 1.1 1 0 0 1 1 1 1 Heme NO binding V4R PF02830.13 gi|433590018|ref|YP_007279514.1| - 1.6e-07 31.0 0.0 2.5e-07 30.4 0.0 1.3 1 0 0 1 1 1 1 V4R domain AIRS_C PF02769.17 gi|433590019|ref|YP_007279515.1| - 5.4e-24 84.9 0.5 7.8e-24 84.4 0.3 1.2 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|433590019|ref|YP_007279515.1| - 6.9e-05 23.0 0.1 6.9e-05 23.0 0.1 2.4 3 0 0 3 3 3 1 AIR synthase related protein, N-terminal domain DUF4350 PF14258.1 gi|433590019|ref|YP_007279515.1| - 0.0027 17.8 0.4 0.0082 16.3 0.3 1.9 1 0 0 1 1 1 1 Domain of unknown function (DUF4350) PemK PF02452.12 gi|433590020|ref|YP_007279516.1| - 7.6e-29 100.1 0.0 8.3e-29 100.0 0.0 1.0 1 0 0 1 1 1 1 PemK-like protein Antitoxin-MazE PF04014.13 gi|433590021|ref|YP_007279517.1| - 3.1e-11 42.7 0.3 3.9e-11 42.4 0.2 1.2 1 0 0 1 1 1 1 Antidote-toxin recognition MazE HTH_20 PF12840.2 gi|433590022|ref|YP_007279518.1| - 0.00034 20.3 0.1 0.00044 19.9 0.1 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.1 gi|433590022|ref|YP_007279518.1| - 0.00056 20.1 0.0 0.00061 20.0 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain GntR PF00392.16 gi|433590022|ref|YP_007279518.1| - 0.0015 17.8 0.1 0.0021 17.4 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family PqqD PF05402.7 gi|433590022|ref|YP_007279518.1| - 0.0022 17.9 0.2 0.0029 17.5 0.1 1.1 1 0 0 1 1 1 1 Coenzyme PQQ synthesis protein D (PqqD) HTH_11 PF08279.7 gi|433590022|ref|YP_007279518.1| - 0.0025 17.4 0.0 0.0031 17.1 0.0 1.3 1 1 0 1 1 1 1 HTH domain HTH_Crp_2 PF13545.1 gi|433590022|ref|YP_007279518.1| - 0.0029 17.3 0.0 0.003 17.3 0.0 1.2 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain Nuc_N PF14448.1 gi|433590022|ref|YP_007279518.1| - 0.03 13.8 0.0 0.037 13.5 0.0 1.2 1 0 0 1 1 1 0 Nuclease N terminal HTH_24 PF13412.1 gi|433590022|ref|YP_007279518.1| - 0.057 12.8 0.0 0.08 12.3 0.0 1.4 1 1 0 1 1 1 0 Winged helix-turn-helix DNA-binding Mrr_N PF14338.1 gi|433590022|ref|YP_007279518.1| - 0.063 13.3 0.0 8.7 6.5 0.0 2.0 1 1 1 2 2 2 0 Mrr N-terminal domain HTH_36 PF13730.1 gi|433590022|ref|YP_007279518.1| - 0.073 13.2 0.0 0.085 12.9 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain Fe_dep_repress PF01325.14 gi|433590022|ref|YP_007279518.1| - 0.078 12.9 0.0 0.093 12.6 0.0 1.2 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain Rrf2 PF02082.15 gi|433590022|ref|YP_007279518.1| - 0.083 13.0 0.0 0.095 12.8 0.0 1.1 1 0 0 1 1 1 0 Transcriptional regulator HlyU PF10115.4 gi|433590022|ref|YP_007279518.1| - 0.084 12.7 0.1 0.11 12.3 0.0 1.1 1 0 0 1 1 1 0 Transcriptional activator HlyU HTH_DeoR PF08220.7 gi|433590022|ref|YP_007279518.1| - 0.084 12.4 0.0 0.11 12.0 0.0 1.1 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain RepL PF05732.6 gi|433590022|ref|YP_007279518.1| - 0.097 11.8 0.0 0.1 11.8 0.0 1.0 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) MarR_2 PF12802.2 gi|433590022|ref|YP_007279518.1| - 0.13 11.9 0.0 0.17 11.5 0.0 1.4 1 1 0 1 1 1 0 MarR family TrmB PF01978.14 gi|433590022|ref|YP_007279518.1| - 0.14 11.8 0.0 0.18 11.5 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Phos_pyr_kin PF08543.7 gi|433590023|ref|YP_007279519.1| - 1.5e-88 296.1 4.8 2.4e-88 295.4 3.3 1.3 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase Aldolase_2 PF10120.4 gi|433590023|ref|YP_007279519.1| - 1.5e-48 164.3 0.2 2.5e-48 163.6 0.1 1.4 1 0 0 1 1 1 1 Putative aldolase PfkB PF00294.19 gi|433590023|ref|YP_007279519.1| - 1.8e-12 47.0 3.7 2.7e-12 46.4 2.5 1.2 1 0 0 1 1 1 1 pfkB family carbohydrate kinase HK PF02110.10 gi|433590023|ref|YP_007279519.1| - 0.0062 15.7 1.0 1.6 7.8 0.0 2.4 2 1 0 2 2 2 2 Hydroxyethylthiazole kinase family Carb_kinase PF01256.12 gi|433590023|ref|YP_007279519.1| - 0.012 14.9 5.0 0.02 14.2 3.5 1.3 1 0 0 1 1 1 0 Carbohydrate kinase Bac_luciferase PF00296.15 gi|433590024|ref|YP_007279520.1| - 3.7e-73 246.3 6.2 4.8e-73 245.9 4.3 1.1 1 0 0 1 1 1 1 Luciferase-like monooxygenase AA_permease_2 PF13520.1 gi|433590025|ref|YP_007279521.1| - 2.9e-50 171.0 31.0 3.5e-50 170.7 21.5 1.0 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|433590025|ref|YP_007279521.1| - 6.1e-41 140.2 32.9 7.5e-41 139.9 22.8 1.0 1 0 0 1 1 1 1 Amino acid permease AA_permease_C PF13906.1 gi|433590025|ref|YP_007279521.1| - 0.049 13.5 0.5 0.049 13.5 0.4 3.0 4 0 0 4 4 4 0 C-terminus of AA_permease Spore_permease PF03845.8 gi|433590025|ref|YP_007279521.1| - 0.13 10.8 14.3 0.19 10.3 0.1 2.8 3 0 0 3 3 3 0 Spore germination protein Usp PF00582.21 gi|433590026|ref|YP_007279522.1| - 3.4e-07 30.5 5.9 6.1e-06 26.4 0.7 2.3 2 1 0 2 2 2 2 Universal stress protein family Usp PF00582.21 gi|433590027|ref|YP_007279523.1| - 3.3e-07 30.5 5.3 3.3e-07 30.5 3.7 1.8 2 0 0 2 2 2 1 Universal stress protein family ABC_tran PF00005.22 gi|433590028|ref|YP_007279524.1| - 7.5e-28 97.5 0.0 1.7e-27 96.3 0.0 1.6 2 0 0 2 2 1 1 ABC transporter AAA_21 PF13304.1 gi|433590028|ref|YP_007279524.1| - 3.9e-12 46.7 0.1 9.4e-06 25.7 0.0 2.3 1 1 0 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|433590028|ref|YP_007279524.1| - 9e-05 22.6 0.4 0.00066 19.8 0.3 2.1 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|433590028|ref|YP_007279524.1| - 0.00038 20.8 0.0 0.00059 20.2 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|433590028|ref|YP_007279524.1| - 0.00063 19.2 0.1 0.0013 18.2 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA PF00004.24 gi|433590028|ref|YP_007279524.1| - 0.0033 17.6 0.1 0.024 14.8 0.0 2.5 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Zeta_toxin PF06414.7 gi|433590028|ref|YP_007279524.1| - 0.0038 16.3 0.1 0.02 13.9 0.0 2.1 2 0 0 2 2 2 1 Zeta toxin AAA_15 PF13175.1 gi|433590028|ref|YP_007279524.1| - 0.004 16.2 0.0 0.85 8.5 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain UPF0079 PF02367.12 gi|433590028|ref|YP_007279524.1| - 0.0042 16.7 0.2 0.0088 15.6 0.1 1.6 1 0 0 1 1 1 1 Uncharacterised P-loop hydrolase UPF0079 AAA_16 PF13191.1 gi|433590028|ref|YP_007279524.1| - 0.0043 17.0 1.6 0.0092 15.9 0.2 2.0 1 1 1 2 2 2 1 AAA ATPase domain AAA_17 PF13207.1 gi|433590028|ref|YP_007279524.1| - 0.0054 17.5 1.6 0.059 14.1 1.1 2.4 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|433590028|ref|YP_007279524.1| - 0.0073 15.5 0.2 0.21 10.7 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_25 PF13481.1 gi|433590028|ref|YP_007279524.1| - 0.0089 15.4 4.1 0.068 12.5 1.1 2.7 1 1 1 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|433590028|ref|YP_007279524.1| - 0.0095 15.8 0.0 0.024 14.4 0.0 1.8 2 0 0 2 2 1 1 AAA domain ELFV_dehydrog_N PF02812.13 gi|433590028|ref|YP_007279524.1| - 0.013 15.1 0.0 0.023 14.2 0.0 1.4 1 0 0 1 1 1 0 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain Arch_ATPase PF01637.13 gi|433590028|ref|YP_007279524.1| - 0.018 14.7 0.0 0.028 14.1 0.0 1.3 1 0 0 1 1 1 0 Archaeal ATPase DUF4162 PF13732.1 gi|433590028|ref|YP_007279524.1| - 0.019 15.4 0.0 0.04 14.4 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4162) Gluconate_2-dh3 PF13618.1 gi|433590028|ref|YP_007279524.1| - 0.02 15.0 0.2 0.081 13.0 0.1 2.0 2 0 0 2 2 2 0 Gluconate 2-dehydrogenase subunit 3 cobW PF02492.14 gi|433590028|ref|YP_007279524.1| - 0.049 13.0 0.2 0.12 11.7 0.2 1.7 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain DUF258 PF03193.11 gi|433590028|ref|YP_007279524.1| - 0.054 12.6 0.1 0.095 11.8 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 Fox-1_C PF12414.3 gi|433590028|ref|YP_007279524.1| - 0.095 13.1 1.1 0.15 12.4 0.0 1.8 2 0 0 2 2 1 0 Calcitonin gene-related peptide regulator C terminal AAA_10 PF12846.2 gi|433590028|ref|YP_007279524.1| - 0.11 11.8 0.9 0.21 11.0 0.6 1.8 1 1 0 1 1 1 0 AAA-like domain AAA_14 PF13173.1 gi|433590028|ref|YP_007279524.1| - 0.11 12.3 0.0 0.99 9.3 0.0 2.2 2 0 0 2 2 2 0 AAA domain NTPase_1 PF03266.10 gi|433590028|ref|YP_007279524.1| - 0.13 12.0 0.1 0.48 10.1 0.0 2.0 3 0 0 3 3 2 0 NTPase NB-ARC PF00931.17 gi|433590028|ref|YP_007279524.1| - 0.13 11.1 0.3 0.28 10.0 0.2 1.4 1 0 0 1 1 1 0 NB-ARC domain MobB PF03205.9 gi|433590028|ref|YP_007279524.1| - 0.13 11.9 2.4 0.13 11.9 0.1 2.2 3 0 0 3 3 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_19 PF13245.1 gi|433590028|ref|YP_007279524.1| - 0.16 11.7 1.1 0.43 10.3 0.1 2.2 2 0 0 2 2 2 0 Part of AAA domain ABC2_membrane_3 PF12698.2 gi|433590029|ref|YP_007279525.1| - 0.00033 19.8 14.0 0.00033 19.8 9.7 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein Romo1 PF10247.4 gi|433590029|ref|YP_007279525.1| - 0.065 13.4 0.8 1.8 8.7 0.1 2.8 2 0 0 2 2 2 0 Reactive mitochondrial oxygen species modulator 1 DUF202 PF02656.10 gi|433590029|ref|YP_007279525.1| - 0.1 12.8 0.5 0.1 12.8 0.4 3.1 2 1 0 2 2 2 0 Domain of unknown function (DUF202) tRNA_bind PF01588.15 gi|433590031|ref|YP_007279527.1| - 4.1e-13 48.9 0.0 4.5e-13 48.8 0.0 1.0 1 0 0 1 1 1 1 Putative tRNA binding domain PIN PF01850.16 gi|433590033|ref|YP_007279529.1| - 0.0013 19.0 0.7 0.0018 18.5 0.5 1.2 1 0 0 1 1 1 1 PIN domain MutS_V PF00488.16 gi|433590034|ref|YP_007279530.1| - 2.4e-102 341.3 0.0 6.3e-102 339.9 0.0 1.7 1 0 0 1 1 1 1 MutS domain V MutS_III PF05192.13 gi|433590034|ref|YP_007279530.1| - 1.1e-42 146.1 5.7 6e-42 143.7 3.7 2.1 2 0 0 2 2 2 1 MutS domain III MutS_I PF01624.15 gi|433590034|ref|YP_007279530.1| - 7.4e-28 96.8 0.0 1.7e-27 95.7 0.0 1.6 1 0 0 1 1 1 1 MutS domain I MutS_IV PF05190.13 gi|433590034|ref|YP_007279530.1| - 4.6e-25 87.6 1.0 1.1e-24 86.3 0.7 1.7 1 0 0 1 1 1 1 MutS family domain IV MutS_II PF05188.12 gi|433590034|ref|YP_007279530.1| - 6.4e-20 71.6 0.0 2.4e-19 69.7 0.0 2.0 2 0 0 2 2 2 1 MutS domain II AAA_29 PF13555.1 gi|433590034|ref|YP_007279530.1| - 0.034 13.6 0.0 0.078 12.5 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_14 PF13173.1 gi|433590034|ref|YP_007279530.1| - 0.094 12.6 0.0 0.33 10.8 0.0 2.0 1 1 0 1 1 1 0 AAA domain AAA_23 PF13476.1 gi|433590034|ref|YP_007279530.1| - 0.099 12.9 0.2 2.3 8.4 0.0 2.4 2 0 0 2 2 2 0 AAA domain HHH_2 PF12826.2 gi|433590034|ref|YP_007279530.1| - 0.19 11.6 0.9 36 4.3 0.0 3.6 3 1 0 3 3 3 0 Helix-hairpin-helix motif Pex24p PF06398.6 gi|433590035|ref|YP_007279531.1| - 4.6 5.9 5.2 4.7 5.8 3.6 1.0 1 0 0 1 1 1 0 Integral peroxisomal membrane peroxin CcmB PF03379.8 gi|433590036|ref|YP_007279532.1| - 0.011 15.0 0.0 0.011 14.9 0.0 1.0 1 0 0 1 1 1 0 CcmB protein DUF4231 PF14015.1 gi|433590036|ref|YP_007279532.1| - 0.043 13.7 0.3 0.049 13.6 0.2 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF4231) DoxX_2 PF13564.1 gi|433590036|ref|YP_007279532.1| - 0.27 11.1 2.9 0.48 10.4 2.0 1.4 1 1 0 1 1 1 0 DoxX-like family adh_short PF00106.20 gi|433590037|ref|YP_007279533.1| - 3.4e-36 124.6 2.0 4.5e-36 124.2 1.4 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|433590037|ref|YP_007279533.1| - 6.7e-30 104.6 0.0 9.8e-30 104.0 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|433590037|ref|YP_007279533.1| - 8.1e-13 48.4 0.6 1.1e-12 48.0 0.4 1.1 1 0 0 1 1 1 1 KR domain THF_DHG_CYH_C PF02882.14 gi|433590037|ref|YP_007279533.1| - 0.00066 18.7 0.2 0.0019 17.2 0.0 1.8 1 1 1 2 2 2 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain 2-Hacid_dh_C PF02826.14 gi|433590037|ref|YP_007279533.1| - 0.0017 17.5 0.1 0.0027 16.8 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_10 PF13460.1 gi|433590037|ref|YP_007279533.1| - 0.0018 18.2 1.4 0.003 17.6 1.0 1.7 1 1 0 1 1 1 1 NADH(P)-binding Eno-Rase_NADH_b PF12242.3 gi|433590037|ref|YP_007279533.1| - 0.012 15.4 0.3 0.026 14.3 0.2 1.5 1 0 0 1 1 1 0 NAD(P)H binding domain of trans-2-enoyl-CoA reductase Shikimate_DH PF01488.15 gi|433590037|ref|YP_007279533.1| - 0.013 15.5 0.1 0.031 14.3 0.1 1.7 1 1 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase Epimerase PF01370.16 gi|433590037|ref|YP_007279533.1| - 0.073 12.4 0.5 0.46 9.8 0.3 2.0 1 1 0 1 1 1 0 NAD dependent epimerase/dehydratase family MutL_C PF08676.6 gi|433590039|ref|YP_007279535.1| - 6.5e-37 126.3 0.0 9.6e-37 125.7 0.0 1.2 1 0 0 1 1 1 1 MutL C terminal dimerisation domain DNA_mis_repair PF01119.14 gi|433590039|ref|YP_007279535.1| - 2.7e-33 113.9 0.0 4.8e-33 113.1 0.0 1.4 1 0 0 1 1 1 1 DNA mismatch repair protein, C-terminal domain HATPase_c_3 PF13589.1 gi|433590039|ref|YP_007279535.1| - 6.9e-12 45.1 0.0 1.3e-11 44.2 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c PF02518.21 gi|433590039|ref|YP_007279535.1| - 2.6e-09 36.7 0.1 6.3e-09 35.5 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MFS_1 PF07690.11 gi|433590040|ref|YP_007279536.1| - 1.3e-13 50.4 31.2 1.3e-13 50.4 21.6 2.2 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.2 gi|433590040|ref|YP_007279536.1| - 0.00078 19.1 0.8 0.013 15.3 0.1 2.9 2 0 0 2 2 2 1 MFS_1 like family Sugar_tr PF00083.19 gi|433590040|ref|YP_007279536.1| - 0.18 10.3 11.0 0.21 10.1 0.2 2.6 3 0 0 3 3 3 0 Sugar (and other) transporter Lar_restr_allev PF14354.1 gi|433590041|ref|YP_007279537.1| - 1.5e-05 25.2 1.5 0.005 17.1 0.1 2.6 2 0 0 2 2 2 1 Restriction alleviation protein Lar zf-TFIIB PF13453.1 gi|433590041|ref|YP_007279537.1| - 0.0011 18.1 3.6 0.11 11.6 0.5 2.7 2 1 0 2 2 2 2 Transcription factor zinc-finger HTH_20 PF12840.2 gi|433590041|ref|YP_007279537.1| - 0.0011 18.7 0.0 0.0028 17.4 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain Zn-ribbon_8 PF09723.5 gi|433590041|ref|YP_007279537.1| - 0.0032 17.4 3.3 4.6 7.2 0.1 3.4 3 0 0 3 3 3 1 Zinc ribbon domain CpXC PF14353.1 gi|433590041|ref|YP_007279537.1| - 0.041 13.8 0.6 0.66 9.9 0.0 2.4 2 1 0 2 2 2 0 CpXC protein Zn_Tnp_IS1595 PF12760.2 gi|433590041|ref|YP_007279537.1| - 0.046 13.5 6.3 1.7 8.4 0.2 3.5 3 0 0 3 3 3 0 Transposase zinc-ribbon domain DZR PF12773.2 gi|433590041|ref|YP_007279537.1| - 0.13 12.0 3.6 9.2 6.1 0.1 2.8 2 1 0 2 2 2 0 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|433590041|ref|YP_007279537.1| - 0.39 9.9 7.4 0.41 9.9 0.1 3.3 3 0 0 3 3 3 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|433590041|ref|YP_007279537.1| - 0.43 10.1 6.9 1.6 8.3 0.1 2.9 3 0 0 3 3 3 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|433590041|ref|YP_007279537.1| - 0.89 9.2 6.8 13 5.5 0.1 3.3 3 1 1 4 4 4 0 zinc-ribbon domain TFIIS_C PF01096.13 gi|433590041|ref|YP_007279537.1| - 1.2 8.8 4.4 12 5.6 0.0 3.8 4 0 0 4 4 4 0 Transcription factor S-II (TFIIS) zf-C4_Topoisom PF01396.14 gi|433590041|ref|YP_007279537.1| - 1.2 8.6 5.4 8.7 5.9 0.0 3.0 4 0 0 4 4 4 0 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_5 PF13719.1 gi|433590041|ref|YP_007279537.1| - 1.4 8.5 7.1 13 5.4 0.1 3.2 3 1 1 4 4 4 0 zinc-ribbon domain DNA_RNApol_7kD PF03604.8 gi|433590041|ref|YP_007279537.1| - 3.3 7.2 7.7 3.1 7.3 0.2 3.3 4 0 0 4 4 4 0 DNA directed RNA polymerase, 7 kDa subunit zf-IS66 PF13005.2 gi|433590041|ref|YP_007279537.1| - 4.9 7.2 7.7 27 4.8 0.0 3.8 5 0 0 5 5 4 0 zinc-finger binding domain of transposase IS66 UPF0547 PF10571.4 gi|433590041|ref|YP_007279537.1| - 4.9 6.9 9.9 2.6 7.8 1.1 3.1 2 1 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-ISL3 PF14690.1 gi|433590041|ref|YP_007279537.1| - 8.1 6.5 9.5 2 8.4 0.1 3.1 3 1 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Ogr_Delta PF04606.7 gi|433590041|ref|YP_007279537.1| - 9.2 6.0 7.3 16 5.2 0.1 3.2 3 0 0 3 3 3 0 Ogr/Delta-like zinc finger RTC PF01137.16 gi|433590042|ref|YP_007279538.1| - 4.9e-69 231.6 0.0 6e-69 231.3 0.0 1.0 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase RTC_insert PF05189.8 gi|433590042|ref|YP_007279538.1| - 2.1e-12 46.9 0.1 3.5e-12 46.2 0.1 1.3 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase (RTC), insert domain PfkB PF00294.19 gi|433590043|ref|YP_007279539.1| - 1.7e-46 158.7 0.0 2e-46 158.5 0.0 1.1 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Acetyltransf_1 PF00583.19 gi|433590044|ref|YP_007279540.1| - 1.9e-12 47.0 0.0 3.7e-12 46.0 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|433590044|ref|YP_007279540.1| - 6.3e-08 32.7 0.3 1e-07 32.0 0.2 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|433590044|ref|YP_007279540.1| - 2.5e-05 24.3 0.0 3.7e-05 23.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|433590044|ref|YP_007279540.1| - 0.00014 21.5 0.0 0.00025 20.7 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_4 PF13420.1 gi|433590044|ref|YP_007279540.1| - 0.00075 19.4 0.0 0.00092 19.1 0.0 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|433590044|ref|YP_007279540.1| - 0.11 12.3 0.0 0.15 11.9 0.0 1.5 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Abhydrolase_6 PF12697.2 gi|433590045|ref|YP_007279541.1| - 3.6e-35 121.9 3.8 4.4e-35 121.6 2.6 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|433590045|ref|YP_007279541.1| - 2.1e-19 70.0 2.9 5.1e-19 68.7 1.0 1.9 1 1 1 2 2 2 1 alpha/beta hydrolase fold Abhydrolase_5 PF12695.2 gi|433590045|ref|YP_007279541.1| - 3.8e-16 59.1 0.1 1.4e-15 57.2 0.1 1.8 1 1 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.3 gi|433590045|ref|YP_007279541.1| - 1.7e-07 30.9 0.0 3.4e-07 30.0 0.0 1.6 1 0 0 1 1 1 1 Putative lysophospholipase AXE1 PF05448.7 gi|433590045|ref|YP_007279541.1| - 0.0028 16.2 0.1 0.0053 15.2 0.0 1.6 2 0 0 2 2 2 1 Acetyl xylan esterase (AXE1) Esterase PF00756.15 gi|433590045|ref|YP_007279541.1| - 0.074 12.4 0.0 0.15 11.5 0.0 1.4 1 1 0 1 1 1 0 Putative esterase DUF676 PF05057.9 gi|433590045|ref|YP_007279541.1| - 0.092 12.0 0.0 0.19 11.0 0.0 1.5 1 1 0 1 1 1 0 Putative serine esterase (DUF676) Thioesterase PF00975.15 gi|433590045|ref|YP_007279541.1| - 0.11 12.7 0.1 0.27 11.4 0.0 1.5 1 1 0 1 1 1 0 Thioesterase domain Peptidase_S15 PF02129.13 gi|433590045|ref|YP_007279541.1| - 0.13 11.7 0.0 0.9 8.9 0.0 2.0 2 0 0 2 2 2 0 X-Pro dipeptidyl-peptidase (S15 family) TAT_signal PF10518.4 gi|433590046|ref|YP_007279542.1| - 0.099 12.7 1.8 0.26 11.4 1.3 1.7 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence DUF3858 PF12970.2 gi|433590046|ref|YP_007279542.1| - 0.14 11.9 0.0 0.22 11.2 0.0 1.3 1 0 0 1 1 1 0 Domain of Unknown Function with PDB structure (DUF3858) DctQ PF04290.7 gi|433590047|ref|YP_007279543.1| - 0.0093 15.7 0.4 0.011 15.4 0.3 1.1 1 0 0 1 1 1 1 Tripartite ATP-independent periplasmic transporters, DctQ component UPF0444 PF15475.1 gi|433590047|ref|YP_007279543.1| - 0.6 10.1 5.4 1.2 9.2 3.8 1.5 1 1 0 1 1 1 0 Transmembrane protein C12orf23, UPF0444 RNB PF00773.14 gi|433590048|ref|YP_007279544.1| - 6.3e-78 262.3 0.0 1.1e-75 254.8 0.0 2.1 1 1 0 1 1 1 1 RNB domain Abhydrolase_6 PF12697.2 gi|433590049|ref|YP_007279545.1| - 6.7e-23 81.7 7.8 9.2e-23 81.3 5.4 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|433590049|ref|YP_007279545.1| - 4.6e-12 45.9 0.0 6e-12 45.6 0.0 1.1 1 0 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_5 PF12695.2 gi|433590049|ref|YP_007279545.1| - 6.1e-12 45.5 0.0 1.1e-11 44.6 0.0 1.4 1 1 0 1 1 1 1 Alpha/beta hydrolase family DUF1057 PF06342.7 gi|433590049|ref|YP_007279545.1| - 0.025 13.3 0.0 0.034 12.9 0.0 1.1 1 0 0 1 1 1 0 Alpha/beta hydrolase of unknown function (DUF1057) Abhydrolase_4 PF08386.5 gi|433590049|ref|YP_007279545.1| - 0.054 13.3 0.0 0.12 12.2 0.0 1.5 1 0 0 1 1 1 0 TAP-like protein HTH_10 PF04967.7 gi|433590050|ref|YP_007279546.1| - 4.4e-15 54.9 0.0 7e-15 54.3 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain Cytochrom_NNT PF03264.9 gi|433590051|ref|YP_007279547.1| - 0.84 9.0 5.8 4.6 6.6 5.0 1.6 1 1 1 2 2 2 0 NapC/NirT cytochrome c family, N-terminal region DZR PF12773.2 gi|433590051|ref|YP_007279547.1| - 0.93 9.3 5.6 2.8 7.8 3.9 1.8 1 1 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|433590051|ref|YP_007279547.1| - 1.9 7.8 6.0 4.1 6.7 3.7 2.0 1 1 1 2 2 2 0 zinc-ribbon domain PUA PF01472.15 gi|433590052|ref|YP_007279548.1| - 2e-18 65.8 1.3 2.9e-18 65.3 0.9 1.3 1 0 0 1 1 1 1 PUA domain CBS PF00571.23 gi|433590053|ref|YP_007279549.1| - 1.4e-27 95.2 0.4 3.1e-13 49.2 0.1 2.1 2 0 0 2 2 2 2 CBS domain DUF604 PF04646.7 gi|433590053|ref|YP_007279549.1| - 0.094 11.9 0.0 0.14 11.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF604 DUF1028 PF06267.7 gi|433590054|ref|YP_007279550.1| - 4.7e-46 156.6 0.0 5.7e-46 156.3 0.0 1.1 1 0 0 1 1 1 1 Family of unknown function (DUF1028) DUF552 PF04472.7 gi|433590055|ref|YP_007279551.1| - 1.4e-19 69.7 2.4 2.2e-19 69.1 1.7 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF552) DUF2088 PF09861.4 gi|433590055|ref|YP_007279551.1| - 0.088 11.8 0.5 0.13 11.3 0.3 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF2088) NIR_SIR PF01077.17 gi|433590056|ref|YP_007279552.1| - 2.9e-39 133.9 0.0 7e-30 103.4 0.0 2.4 2 0 0 2 2 2 2 Nitrite and sulphite reductase 4Fe-4S domain Rhodanese PF00581.15 gi|433590056|ref|YP_007279552.1| - 2.1e-38 131.1 0.0 1.1e-19 70.8 0.0 2.5 2 0 0 2 2 2 2 Rhodanese-like domain NIR_SIR_ferr PF03460.12 gi|433590056|ref|YP_007279552.1| - 3.8e-35 119.3 1.7 3.3e-16 58.6 0.2 4.1 3 1 0 3 3 3 2 Nitrite/Sulfite reductase ferredoxin-like half domain FrhB_FdhB_C PF04432.8 gi|433590057|ref|YP_007279553.1| - 3.9e-29 101.1 0.0 3.9e-29 101.1 0.0 2.1 2 1 0 2 2 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.8 gi|433590057|ref|YP_007279553.1| - 3.7e-21 74.7 0.4 7.9e-21 73.7 0.3 1.5 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4_21 PF14697.1 gi|433590057|ref|YP_007279553.1| - 1.1e-09 37.9 8.0 2.5e-09 36.8 5.6 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|433590057|ref|YP_007279553.1| - 4.8e-08 33.1 8.6 4.8e-08 33.1 6.0 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|433590057|ref|YP_007279553.1| - 1.2e-07 31.4 12.5 3.1e-06 26.9 8.7 2.8 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|433590057|ref|YP_007279553.1| - 2.9e-07 30.7 10.9 2.9e-07 30.7 7.5 2.2 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|433590057|ref|YP_007279553.1| - 1.9e-06 27.1 18.2 8.9e-05 21.9 2.7 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|433590057|ref|YP_007279553.1| - 4.8e-06 26.4 18.8 0.0042 17.3 3.5 3.3 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|433590057|ref|YP_007279553.1| - 1e-05 26.1 7.6 0.011 16.4 1.0 3.2 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.2 gi|433590057|ref|YP_007279553.1| - 2.5e-05 23.9 18.8 0.00036 20.2 3.0 2.9 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|433590057|ref|YP_007279553.1| - 0.00014 21.7 10.8 0.0045 16.9 8.6 2.4 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|433590057|ref|YP_007279553.1| - 0.00017 21.9 10.2 0.037 14.4 1.2 2.8 3 0 0 3 3 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|433590057|ref|YP_007279553.1| - 0.00036 20.8 9.5 0.032 14.5 1.5 2.6 1 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|433590057|ref|YP_007279553.1| - 0.00072 19.3 4.4 0.00072 19.3 3.0 3.1 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_13 PF13370.1 gi|433590057|ref|YP_007279553.1| - 0.013 15.8 11.6 0.11 12.9 2.2 2.9 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_20 PF14691.1 gi|433590057|ref|YP_007279553.1| - 0.015 14.8 0.3 0.015 14.8 0.2 1.7 2 0 0 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_11 PF13247.1 gi|433590057|ref|YP_007279553.1| - 0.021 14.7 3.0 0.046 13.6 2.1 1.5 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|433590057|ref|YP_007279553.1| - 0.91 10.1 19.8 10 6.7 8.0 3.7 2 2 0 2 2 2 0 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|433590057|ref|YP_007279553.1| - 4.4 8.1 20.8 0.095 13.3 3.2 3.1 3 0 0 3 3 3 0 4Fe-4S binding domain HTH_10 PF04967.7 gi|433590058|ref|YP_007279554.1| - 3.2e-21 74.6 0.2 7.8e-21 73.4 0.0 1.8 2 0 0 2 2 2 1 HTH DNA binding domain HTH_5 PF01022.15 gi|433590058|ref|YP_007279554.1| - 0.0093 15.6 0.0 2.5 7.8 0.0 2.7 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_22 PF13309.1 gi|433590058|ref|YP_007279554.1| - 0.01 15.5 0.0 0.027 14.2 0.0 1.8 1 0 0 1 1 1 0 HTH domain HTH_IclR PF09339.5 gi|433590058|ref|YP_007279554.1| - 0.014 14.9 0.1 2.3 7.8 0.0 2.8 3 0 0 3 3 3 0 IclR helix-turn-helix domain Sigma70_r4 PF04545.11 gi|433590058|ref|YP_007279554.1| - 0.069 12.4 0.0 0.81 9.0 0.0 2.6 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_20 PF12840.2 gi|433590058|ref|YP_007279554.1| - 0.08 12.7 0.1 0.48 10.2 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_7 PF02796.10 gi|433590058|ref|YP_007279554.1| - 0.093 12.6 0.0 0.32 10.8 0.0 1.9 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase DUF3802 PF12290.3 gi|433590058|ref|YP_007279554.1| - 0.1 12.8 0.2 0.21 11.8 0.2 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3802) DUF134 PF02001.11 gi|433590058|ref|YP_007279554.1| - 0.11 12.4 0.0 0.18 11.7 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function DUF134 HTH_23 PF13384.1 gi|433590058|ref|YP_007279554.1| - 0.12 12.0 0.0 0.33 10.6 0.0 1.7 1 0 0 1 1 1 0 Homeodomain-like domain Usp PF00582.21 gi|433590059|ref|YP_007279555.1| - 4.6e-19 68.9 0.6 5.4e-19 68.7 0.4 1.1 1 0 0 1 1 1 1 Universal stress protein family Glyoxalase_2 PF12681.2 gi|433590060|ref|YP_007279556.1| - 1.4e-16 61.0 0.4 1.7e-16 60.7 0.3 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase PF00903.20 gi|433590060|ref|YP_007279556.1| - 5.7e-11 42.4 0.2 7.6e-11 42.0 0.1 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.1 gi|433590060|ref|YP_007279556.1| - 9.1e-08 32.0 0.3 4.4e-06 26.6 0.1 2.5 1 1 1 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily MFS_1 PF07690.11 gi|433590061|ref|YP_007279557.1| - 9.8e-38 129.7 50.7 1.8e-34 119.0 27.9 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.1 gi|433590061|ref|YP_007279557.1| - 4.3e-10 38.5 24.8 2.7e-07 29.3 12.9 3.3 1 1 1 2 2 2 2 MFS/sugar transport protein TRI12 PF06609.8 gi|433590061|ref|YP_007279557.1| - 0.00088 17.5 4.9 0.00088 17.5 3.4 2.3 2 0 0 2 2 2 2 Fungal trichothecene efflux pump (TRI12) DUF3439 PF11921.3 gi|433590061|ref|YP_007279557.1| - 0.025 14.3 0.0 0.054 13.2 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF3439) ATG22 PF11700.3 gi|433590061|ref|YP_007279557.1| - 0.075 11.5 0.2 0.075 11.5 0.1 3.9 2 1 2 4 4 4 0 Vacuole effluxer Atg22 like Citrate_synt PF00285.16 gi|433590062|ref|YP_007279558.1| - 6.8e-134 446.0 0.0 7.7e-134 445.9 0.0 1.0 1 0 0 1 1 1 1 Citrate synthase CARDB PF07705.6 gi|433590064|ref|YP_007279560.1| - 0.026 14.5 1.3 0.041 13.9 0.1 2.0 2 0 0 2 2 2 0 CARDB NPCBM_assoc PF10633.4 gi|433590064|ref|YP_007279560.1| - 0.035 14.1 0.1 0.035 14.1 0.1 2.2 2 0 0 2 2 2 0 NPCBM-associated, NEW3 domain of alpha-galactosidase AIG2 PF06094.7 gi|433590065|ref|YP_007279561.1| - 3.2e-16 59.6 0.1 4.6e-16 59.1 0.0 1.3 1 1 0 1 1 1 1 AIG2-like family AIG2_2 PF13772.1 gi|433590065|ref|YP_007279561.1| - 0.001 19.1 0.0 0.0018 18.3 0.0 1.6 1 1 0 1 1 1 1 AIG2-like family PALP PF00291.20 gi|433590066|ref|YP_007279562.1| - 1.1e-80 271.0 6.1 1.4e-80 270.8 4.2 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ACT_4 PF13291.1 gi|433590066|ref|YP_007279562.1| - 0.00026 21.2 0.0 0.0014 18.9 0.0 2.1 2 0 0 2 2 2 1 ACT domain ACT PF01842.20 gi|433590066|ref|YP_007279562.1| - 0.00088 18.7 0.0 0.0037 16.7 0.0 2.1 1 0 0 1 1 1 1 ACT domain DegT_DnrJ_EryC1 PF01041.12 gi|433590066|ref|YP_007279562.1| - 0.0038 16.3 0.3 0.023 13.7 0.0 2.0 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family PQQ_2 PF13360.1 gi|433590067|ref|YP_007279563.1| - 1.8e-45 155.2 13.2 6.1e-19 68.4 1.7 4.0 1 1 3 4 4 4 4 PQQ-like domain PQQ_3 PF13570.1 gi|433590067|ref|YP_007279563.1| - 2.7e-39 132.3 28.2 1.2e-05 25.4 0.2 8.2 8 0 0 8 8 8 8 PQQ-like domain PQQ PF01011.16 gi|433590067|ref|YP_007279563.1| - 3.7e-22 76.6 19.1 0.00076 18.8 0.1 8.1 7 1 2 9 9 9 5 PQQ enzyme repeat DUF4357 PF14267.1 gi|433590067|ref|YP_007279563.1| - 0.11 12.1 1.3 21 4.8 0.0 3.5 4 0 0 4 4 4 0 Domain of unknown function (DUF4357) Ribonuc_L-PSP PF01042.16 gi|433590068|ref|YP_007279564.1| - 1.2e-39 134.7 0.1 1.3e-39 134.6 0.0 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP YjgF_endoribonc PF14588.1 gi|433590068|ref|YP_007279564.1| - 0.053 13.4 0.1 0.087 12.7 0.0 1.5 1 1 0 1 1 1 0 YjgF/chorismate_mutase-like, putative endoribonuclease DUF159 PF02586.9 gi|433590071|ref|YP_007279567.1| - 1.9e-58 197.4 0.0 2.3e-58 197.1 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised ACR, COG2135 Gluconate_2-dh3 PF13618.1 gi|433590072|ref|YP_007279568.1| - 5.8e-12 45.8 0.0 7.7e-12 45.5 0.0 1.1 1 0 0 1 1 1 1 Gluconate 2-dehydrogenase subunit 3 TAT_signal PF10518.4 gi|433590072|ref|YP_007279568.1| - 0.01 15.7 0.7 0.029 14.3 0.5 1.9 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence GMC_oxred_C PF05199.8 gi|433590073|ref|YP_007279569.1| - 6.5e-21 75.1 0.1 1.8e-20 73.7 0.1 1.8 1 1 0 1 1 1 1 GMC oxidoreductase GMC_oxred_N PF00732.14 gi|433590073|ref|YP_007279569.1| - 2e-14 53.4 0.0 3e-14 52.8 0.0 1.2 1 0 0 1 1 1 1 GMC oxidoreductase DAO PF01266.19 gi|433590073|ref|YP_007279569.1| - 6.3e-09 35.1 0.9 0.0038 16.1 0.0 3.1 3 1 0 3 3 3 2 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|433590073|ref|YP_007279569.1| - 3.4e-07 29.6 0.8 0.0023 17.0 0.1 2.1 2 0 0 2 2 2 2 FAD binding domain FAD_binding_2 PF00890.19 gi|433590073|ref|YP_007279569.1| - 3.5e-07 29.4 2.1 0.0095 14.8 0.0 2.2 2 0 0 2 2 2 2 FAD binding domain Pyr_redox_2 PF07992.9 gi|433590073|ref|YP_007279569.1| - 1.6e-05 24.8 0.1 0.0074 16.1 0.1 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|433590073|ref|YP_007279569.1| - 8.2e-05 21.2 1.2 0.0041 15.6 0.6 2.1 2 0 0 2 2 2 1 HI0933-like protein Lycopene_cycl PF05834.7 gi|433590073|ref|YP_007279569.1| - 0.0019 17.1 0.4 0.0029 16.5 0.3 1.2 1 0 0 1 1 1 1 Lycopene cyclase protein NAD_binding_8 PF13450.1 gi|433590073|ref|YP_007279569.1| - 0.0033 17.3 1.8 0.0048 16.8 0.3 2.0 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Fer4_7 PF12838.2 gi|433590073|ref|YP_007279569.1| - 0.0094 16.3 1.0 0.023 15.0 0.7 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Pyr_redox_3 PF13738.1 gi|433590073|ref|YP_007279569.1| - 0.017 15.1 0.2 0.22 11.5 0.1 2.4 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Fer4_8 PF13183.1 gi|433590073|ref|YP_007279569.1| - 0.033 14.2 0.1 0.065 13.2 0.1 1.5 1 0 0 1 1 1 0 4Fe-4S dicluster domain Thi4 PF01946.12 gi|433590073|ref|YP_007279569.1| - 0.092 11.8 0.1 0.18 10.9 0.1 1.4 1 0 0 1 1 1 0 Thi4 family Fer4_18 PF13746.1 gi|433590073|ref|YP_007279569.1| - 0.094 13.1 0.2 0.21 12.0 0.2 1.5 1 0 0 1 1 1 0 4Fe-4S dicluster domain Pyr_redox PF00070.22 gi|433590073|ref|YP_007279569.1| - 0.099 13.0 0.3 1.2 9.6 0.0 2.6 3 0 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase Fer4_17 PF13534.1 gi|433590073|ref|YP_007279569.1| - 0.14 12.5 0.0 0.28 11.5 0.0 1.4 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4 PF00037.22 gi|433590073|ref|YP_007279569.1| - 0.17 11.5 0.9 0.43 10.2 0.7 1.8 1 0 0 1 1 1 0 4Fe-4S binding domain FAD_oxidored PF12831.2 gi|433590073|ref|YP_007279569.1| - 0.76 8.7 4.0 1.5 7.7 1.8 1.9 2 0 0 2 2 2 0 FAD dependent oxidoreductase Fer4_3 PF12798.2 gi|433590073|ref|YP_007279569.1| - 1.2 9.9 3.5 2.7 8.7 2.4 1.6 1 0 0 1 1 1 0 4Fe-4S binding domain DUF3188 PF11384.3 gi|433590074|ref|YP_007279570.1| - 1.1 8.9 9.3 8.8 5.9 6.5 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF3188) N_methyl_2 PF13544.1 gi|433590074|ref|YP_007279570.1| - 2.4 7.7 4.7 0.81 9.2 0.9 1.9 2 0 0 2 2 2 0 Type IV pilin N-term methylation site GFxxxE DUF3285 PF11688.3 gi|433590074|ref|YP_007279570.1| - 4.1 7.0 5.9 9.3 5.9 0.3 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF3285) DUF3040 PF11239.3 gi|433590074|ref|YP_007279570.1| - 5.1 7.2 6.8 6.3 6.9 4.7 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3040) CorA PF01544.13 gi|433590075|ref|YP_007279571.1| - 2.8e-78 262.9 0.0 3.2e-78 262.7 0.0 1.0 1 0 0 1 1 1 1 CorA-like Mg2+ transporter protein Glycos_transf_2 PF00535.21 gi|433590076|ref|YP_007279572.1| - 1.1e-20 74.0 0.0 1.4e-20 73.6 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|433590076|ref|YP_007279572.1| - 7.3e-07 29.2 0.2 9.5e-07 28.8 0.1 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 PMT_2 PF13231.1 gi|433590077|ref|YP_007279573.1| - 5.5e-13 49.1 10.9 5.5e-13 49.1 7.6 4.3 4 1 1 5 5 5 2 Dolichyl-phosphate-mannose-protein mannosyltransferase PMT PF02366.13 gi|433590077|ref|YP_007279573.1| - 3e-05 23.5 5.8 3e-05 23.5 4.0 2.1 3 0 0 3 3 3 1 Dolichyl-phosphate-mannose-protein mannosyltransferase BPD_transp_1 PF00528.17 gi|433590078|ref|YP_007279574.1| - 1.9e-25 89.4 33.2 2.9e-14 52.9 7.6 3.8 2 2 2 4 4 4 3 Binding-protein-dependent transport system inner membrane component Flp_Fap PF04964.9 gi|433590078|ref|YP_007279574.1| - 4.9 6.8 14.9 0.14 11.7 0.5 3.6 3 0 0 3 3 3 0 Flp/Fap pilin component SBP_bac_6 PF13343.1 gi|433590079|ref|YP_007279575.1| - 2e-16 60.0 0.1 2.6e-16 59.6 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.1 gi|433590079|ref|YP_007279575.1| - 4.1e-10 39.8 2.4 5.4e-10 39.4 1.7 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|433590079|ref|YP_007279575.1| - 1.5e-08 34.7 3.0 2.1e-08 34.3 2.1 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.1 gi|433590079|ref|YP_007279575.1| - 2.2e-07 30.7 1.3 3.2e-07 30.2 0.9 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein RGP PF03214.8 gi|433590080|ref|YP_007279576.1| - 1.3e-17 63.5 0.0 1.8e-17 63.1 0.0 1.2 1 0 0 1 1 1 1 Reversibly glycosylated polypeptide UPF0104 PF03706.8 gi|433590081|ref|YP_007279577.1| - 4.3e-35 121.4 35.0 5.9e-35 120.9 24.3 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0104) Epimerase PF01370.16 gi|433590082|ref|YP_007279578.1| - 1.8e-50 171.6 0.0 2.1e-50 171.3 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|433590082|ref|YP_007279578.1| - 1.7e-17 63.2 0.0 2e-17 63.0 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.14 gi|433590082|ref|YP_007279578.1| - 2.7e-15 55.8 0.0 3.3e-15 55.5 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.10 gi|433590082|ref|YP_007279578.1| - 5.4e-15 55.0 0.0 1.4e-13 50.4 0.0 2.6 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.1 gi|433590082|ref|YP_007279578.1| - 6.7e-14 52.3 0.2 9.3e-14 51.8 0.1 1.4 1 1 0 1 1 1 1 NADH(P)-binding NAD_binding_4 PF07993.7 gi|433590082|ref|YP_007279578.1| - 5.6e-13 48.3 0.0 4.7e-08 32.2 0.0 2.2 1 1 1 2 2 2 2 Male sterility protein NmrA PF05368.8 gi|433590082|ref|YP_007279578.1| - 1.8e-05 24.1 0.0 0.00021 20.6 0.0 2.1 2 0 0 2 2 2 1 NmrA-like family adh_short PF00106.20 gi|433590082|ref|YP_007279578.1| - 1.9e-05 24.6 2.4 0.00016 21.6 0.5 2.7 2 1 0 2 2 2 1 short chain dehydrogenase NAD_binding_7 PF13241.1 gi|433590082|ref|YP_007279578.1| - 0.0017 18.5 0.0 0.003 17.8 0.0 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding KR PF08659.5 gi|433590082|ref|YP_007279578.1| - 0.0082 15.8 0.4 0.12 12.0 0.3 2.6 2 1 0 2 2 2 1 KR domain TrkA_N PF02254.13 gi|433590082|ref|YP_007279578.1| - 0.034 14.1 0.0 0.079 12.9 0.0 1.6 1 0 0 1 1 1 0 TrkA-N domain Saccharop_dh PF03435.13 gi|433590082|ref|YP_007279578.1| - 0.058 12.3 0.1 0.2 10.5 0.1 1.7 2 0 0 2 2 2 0 Saccharopine dehydrogenase eRF1_2 PF03464.10 gi|433590083|ref|YP_007279579.1| - 1.1e-37 129.3 0.0 3.2e-37 127.8 0.0 1.8 2 0 0 2 2 2 1 eRF1 domain 2 eRF1_3 PF03465.10 gi|433590083|ref|YP_007279579.1| - 1.2e-29 102.8 0.3 4.5e-29 100.9 0.0 2.2 2 0 0 2 2 2 1 eRF1 domain 3 eRF1_1 PF03463.10 gi|433590083|ref|YP_007279579.1| - 1.2e-25 89.5 0.0 1.9e-25 88.9 0.0 1.3 1 0 0 1 1 1 1 eRF1 domain 1 Zn-ribbon_8 PF09723.5 gi|433590083|ref|YP_007279579.1| - 0.0011 18.9 2.0 0.0026 17.6 1.4 1.7 1 0 0 1 1 1 1 Zinc ribbon domain TF_Zn_Ribbon PF08271.7 gi|433590083|ref|YP_007279579.1| - 0.0098 15.1 5.5 0.0098 15.1 3.8 1.9 2 0 0 2 2 2 1 TFIIB zinc-binding Lar_restr_allev PF14354.1 gi|433590083|ref|YP_007279579.1| - 0.016 15.4 1.8 0.039 14.2 1.2 1.6 1 0 0 1 1 1 0 Restriction alleviation protein Lar OrfB_Zn_ribbon PF07282.6 gi|433590083|ref|YP_007279579.1| - 0.018 14.6 2.1 0.036 13.7 1.5 1.5 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zf-ribbon_3 PF13248.1 gi|433590083|ref|YP_007279579.1| - 0.044 13.0 2.3 4.3 6.6 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain DZR PF12773.2 gi|433590083|ref|YP_007279579.1| - 0.061 13.1 0.9 0.12 12.2 0.6 1.4 1 0 0 1 1 1 0 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|433590083|ref|YP_007279579.1| - 0.064 12.7 1.0 8.1 6.0 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain LcrG PF07216.7 gi|433590083|ref|YP_007279579.1| - 0.11 12.5 0.1 0.42 10.6 0.1 2.0 1 0 0 1 1 1 0 LcrG protein YhfH PF14149.1 gi|433590083|ref|YP_007279579.1| - 0.15 11.8 1.7 1.1 9.1 0.1 2.6 2 0 0 2 2 2 0 YhfH-like protein zf-HYPF PF07503.7 gi|433590083|ref|YP_007279579.1| - 0.35 10.3 1.8 0.76 9.2 1.2 1.5 1 0 0 1 1 1 0 HypF finger DUF2387 PF09526.5 gi|433590083|ref|YP_007279579.1| - 0.9 9.5 4.9 0.36 10.7 1.1 2.0 2 0 0 2 2 2 0 Probable metal-binding protein (DUF2387) CbiA PF01656.18 gi|433590084|ref|YP_007279580.1| - 1.1e-31 109.8 0.2 1.4e-31 109.4 0.1 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|433590084|ref|YP_007279580.1| - 4.5e-18 65.6 0.0 6.1e-18 65.2 0.0 1.2 1 0 0 1 1 1 1 AAA domain Fer4_NifH PF00142.13 gi|433590084|ref|YP_007279580.1| - 4.2e-12 45.8 0.0 1.1e-11 44.4 0.0 1.6 1 1 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family YhjQ PF06564.7 gi|433590084|ref|YP_007279580.1| - 1e-08 34.8 0.0 2e-08 33.9 0.0 1.5 1 1 0 1 1 1 1 YhjQ protein MipZ PF09140.6 gi|433590084|ref|YP_007279580.1| - 1.2e-08 34.3 0.1 2.9e-08 33.1 0.1 1.6 1 1 0 1 1 1 1 ATPase MipZ AAA_26 PF13500.1 gi|433590084|ref|YP_007279580.1| - 3.1e-05 23.6 1.1 0.00067 19.3 0.0 2.2 2 0 0 2 2 2 1 AAA domain ArsA_ATPase PF02374.10 gi|433590084|ref|YP_007279580.1| - 3.7e-05 22.9 1.6 6.8e-05 22.0 1.1 1.4 1 0 0 1 1 1 1 Anion-transporting ATPase ParA PF10609.4 gi|433590084|ref|YP_007279580.1| - 4.5e-05 23.2 0.1 0.00011 22.0 0.0 1.6 1 0 0 1 1 1 1 ParA/MinD ATPase like VirC1 PF07015.6 gi|433590084|ref|YP_007279580.1| - 0.00024 20.2 0.6 0.00047 19.3 0.4 1.4 1 0 0 1 1 1 1 VirC1 protein ArgK PF03308.11 gi|433590084|ref|YP_007279580.1| - 0.017 13.8 2.7 0.045 12.5 1.9 1.7 1 1 0 1 1 1 0 ArgK protein MobB PF03205.9 gi|433590084|ref|YP_007279580.1| - 0.025 14.2 0.1 0.063 12.9 0.1 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B HD_4 PF13328.1 gi|433590084|ref|YP_007279580.1| - 0.044 13.5 0.2 1.9 8.1 0.0 2.3 2 0 0 2 2 2 0 HD domain FTHFS PF01268.14 gi|433590084|ref|YP_007279580.1| - 0.046 11.7 0.5 0.069 11.1 0.4 1.2 1 0 0 1 1 1 0 Formate--tetrahydrofolate ligase AAA_10 PF12846.2 gi|433590084|ref|YP_007279580.1| - 0.049 13.0 0.3 0.1 12.0 0.2 1.4 1 1 0 1 1 1 0 AAA-like domain SRP54 PF00448.17 gi|433590084|ref|YP_007279580.1| - 0.079 12.3 2.1 0.12 11.8 1.0 1.6 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain Spore_YhcN_YlaJ PF09580.5 gi|433590085|ref|YP_007279581.1| - 0.036 14.1 0.2 0.042 13.9 0.1 1.2 1 0 0 1 1 1 0 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) LPAM_1 PF08139.7 gi|433590085|ref|YP_007279581.1| - 0.08 13.1 2.1 0.13 12.5 1.5 1.3 1 0 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site Daxx PF03344.10 gi|433590085|ref|YP_007279581.1| - 0.94 7.8 3.9 1.1 7.6 2.7 1.1 1 0 0 1 1 1 0 Daxx Family CobT PF06213.7 gi|433590085|ref|YP_007279581.1| - 4.6 6.2 11.1 7.1 5.6 7.7 1.3 1 0 0 1 1 1 0 Cobalamin biosynthesis protein CobT tRNA-synt_1d PF00750.14 gi|433590086|ref|YP_007279582.1| - 7.6e-58 196.0 0.3 1e-57 195.6 0.2 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (R) DALR_1 PF05746.10 gi|433590086|ref|YP_007279582.1| - 4.1e-30 104.1 0.0 6.9e-29 100.2 0.0 2.7 2 1 0 2 2 2 1 DALR anticodon binding domain Arg_tRNA_synt_N PF03485.11 gi|433590086|ref|YP_007279582.1| - 3.1e-10 40.4 0.0 9.7e-10 38.8 0.0 1.8 1 0 0 1 1 1 1 Arginyl tRNA synthetase N terminal domain tRNA-synt_1f PF01921.13 gi|433590086|ref|YP_007279582.1| - 0.0083 14.8 0.0 0.053 12.1 0.0 2.1 2 0 0 2 2 2 1 tRNA synthetases class I (K) tRNA-synt_1e PF01406.14 gi|433590086|ref|YP_007279582.1| - 0.057 12.5 0.0 0.12 11.4 0.0 1.4 1 1 0 1 1 1 0 tRNA synthetases class I (C) catalytic domain DDE_Tnp_1 PF01609.16 gi|433590087|ref|YP_007279583.1| - 1.2e-14 54.3 0.0 1.7e-14 53.8 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain IncA PF04156.9 gi|433590088|ref|YP_007279584.1| - 3.1 7.3 5.3 2.6 7.6 2.7 1.6 2 0 0 2 2 2 0 IncA protein NUDIX PF00293.23 gi|433590089|ref|YP_007279585.1| - 9e-18 64.2 0.3 1.2e-17 63.8 0.2 1.1 1 0 0 1 1 1 1 NUDIX domain Nudix_N_2 PF14803.1 gi|433590089|ref|YP_007279585.1| - 2.2e-06 27.2 2.5 2.2e-06 27.2 1.8 1.8 2 0 0 2 2 2 1 Nudix N-terminal DZR PF12773.2 gi|433590089|ref|YP_007279585.1| - 0.00049 19.8 1.8 0.00085 19.0 1.3 1.3 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|433590089|ref|YP_007279585.1| - 0.0054 15.8 0.7 0.21 10.8 0.1 2.4 2 0 0 2 2 2 1 zinc-ribbon domain UPF0547 PF10571.4 gi|433590089|ref|YP_007279585.1| - 0.01 15.5 6.7 0.35 10.6 1.6 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 RNA_POL_M_15KD PF02150.11 gi|433590089|ref|YP_007279585.1| - 0.011 15.3 0.6 0.021 14.4 0.4 1.4 1 0 0 1 1 1 0 RNA polymerases M/15 Kd subunit zf-NADH-PPase PF09297.6 gi|433590089|ref|YP_007279585.1| - 0.023 14.2 3.2 0.084 12.3 2.2 1.9 1 1 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain RNHCP PF12647.2 gi|433590089|ref|YP_007279585.1| - 0.04 13.7 1.8 0.069 12.9 1.2 1.4 1 0 0 1 1 1 0 RNHCP domain GFA PF04828.9 gi|433590089|ref|YP_007279585.1| - 0.049 13.5 2.0 2.4 8.1 0.1 2.4 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme zf-TFIIB PF13453.1 gi|433590089|ref|YP_007279585.1| - 0.054 12.6 3.7 0.16 11.1 2.6 1.7 2 0 0 2 2 2 0 Transcription factor zinc-finger Zn-ribbon_8 PF09723.5 gi|433590089|ref|YP_007279585.1| - 0.056 13.4 5.8 0.3 11.0 3.5 2.2 1 1 1 2 2 2 0 Zinc ribbon domain TF_Zn_Ribbon PF08271.7 gi|433590089|ref|YP_007279585.1| - 0.12 11.7 2.0 0.48 9.7 1.4 2.0 1 1 0 1 1 1 0 TFIIB zinc-binding zf-C3HC4_3 PF13920.1 gi|433590089|ref|YP_007279585.1| - 0.12 12.0 0.8 0.24 11.0 0.5 1.4 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) OrfB_Zn_ribbon PF07282.6 gi|433590089|ref|YP_007279585.1| - 0.17 11.5 1.0 0.31 10.7 0.7 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zinc_ribbon_2 PF13240.1 gi|433590089|ref|YP_007279585.1| - 0.27 10.7 2.0 0.77 9.3 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DNA_ligase_ZBD PF03119.11 gi|433590089|ref|YP_007279585.1| - 0.33 10.7 4.7 0.52 10.0 0.0 2.9 3 0 0 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain zf-IS66 PF13005.2 gi|433590089|ref|YP_007279585.1| - 1.8 8.6 9.7 0.24 11.3 0.4 2.8 2 1 1 3 3 3 0 zinc-finger binding domain of transposase IS66 PALP PF00291.20 gi|433590090|ref|YP_007279586.1| - 2e-55 188.2 0.4 2.3e-55 188.0 0.3 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme A2L_zn_ribbon PF08792.5 gi|433590090|ref|YP_007279586.1| - 0.022 14.2 0.2 1.4 8.4 0.0 2.3 2 0 0 2 2 2 0 A2L zinc ribbon domain AstE_AspA PF04952.9 gi|433590091|ref|YP_007279587.1| - 6.7e-56 189.3 0.0 7.8e-56 189.1 0.0 1.0 1 0 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family Pro_dh PF01619.13 gi|433590092|ref|YP_007279588.1| - 4.5e-36 124.4 0.0 8.9e-36 123.4 0.0 1.5 1 1 0 1 1 1 1 Proline dehydrogenase PqqD PF05402.7 gi|433590092|ref|YP_007279588.1| - 0.13 12.3 2.4 0.35 10.9 0.0 2.8 3 1 1 4 4 4 0 Coenzyme PQQ synthesis protein D (PqqD) DDE_Tnp_1 PF01609.16 gi|433590093|ref|YP_007279589.1| - 1.3e-14 54.2 0.0 1.8e-14 53.7 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.6 gi|433590093|ref|YP_007279589.1| - 0.0027 17.5 0.0 0.005 16.7 0.0 1.5 1 0 0 1 1 1 1 Transposase domain (DUF772) Aminotran_3 PF00202.16 gi|433590094|ref|YP_007279590.1| - 2.4e-89 299.5 0.0 2.9e-89 299.2 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-III Ribonuc_L-PSP PF01042.16 gi|433590095|ref|YP_007279591.1| - 3.6e-36 123.5 0.0 4e-36 123.4 0.0 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP Tic20 PF09685.5 gi|433590096|ref|YP_007279592.1| - 5.7e-18 64.8 11.4 6.7e-18 64.6 7.9 1.0 1 0 0 1 1 1 1 Tic20-like protein YtpI PF14007.1 gi|433590096|ref|YP_007279592.1| - 1.5 8.8 8.1 0.58 10.1 2.5 2.3 1 1 1 2 2 2 0 YtpI-like protein FUR PF01475.14 gi|433590097|ref|YP_007279593.1| - 0.028 14.3 0.1 0.039 13.8 0.1 1.1 1 0 0 1 1 1 0 Ferric uptake regulator family Replic_Relax PF13814.1 gi|433590097|ref|YP_007279593.1| - 0.032 14.0 0.0 0.045 13.5 0.0 1.3 1 0 0 1 1 1 0 Replication-relaxation HTH_Tnp_Tc3_2 PF01498.13 gi|433590097|ref|YP_007279593.1| - 0.033 14.2 0.2 0.057 13.4 0.1 1.3 1 0 0 1 1 1 0 Transposase Peptidase_M20 PF01546.23 gi|433590098|ref|YP_007279594.1| - 5.9e-21 74.8 10.4 2.4e-20 72.8 7.2 1.9 1 1 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|433590098|ref|YP_007279594.1| - 4e-12 45.8 0.7 8.5e-12 44.8 0.5 1.5 1 0 0 1 1 1 1 Peptidase dimerisation domain DUF4131 PF13567.1 gi|433590099|ref|YP_007279595.1| - 0.054 12.9 0.3 0.062 12.7 0.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) Fig1 PF12351.3 gi|433590099|ref|YP_007279595.1| - 0.58 10.0 2.2 0.76 9.6 1.5 1.1 1 0 0 1 1 1 0 Ca2+ regulator and membrane fusion protein Fig1 Sdh5 PF03937.11 gi|433590100|ref|YP_007279596.1| - 0.05 13.2 0.4 0.11 12.1 0.3 1.6 1 0 0 1 1 1 0 Flavinator of succinate dehydrogenase GPP34 PF05719.6 gi|433590100|ref|YP_007279596.1| - 0.1 12.6 1.4 0.97 9.4 0.9 2.1 1 1 0 1 1 1 0 Golgi phosphoprotein 3 (GPP34) ABC1 PF03109.11 gi|433590100|ref|YP_007279596.1| - 0.15 12.0 1.2 0.48 10.4 0.2 1.9 2 0 0 2 2 2 0 ABC1 family YtxH PF12732.2 gi|433590100|ref|YP_007279596.1| - 0.26 11.6 1.2 0.52 10.7 0.4 1.8 2 1 0 2 2 2 0 YtxH-like protein DDE_Tnp_IS66 PF03050.9 gi|433590101|ref|YP_007279597.1| - 1.6e-54 184.9 0.9 2.2e-54 184.5 0.6 1.2 1 0 0 1 1 1 1 Transposase IS66 family DDE_Tnp_IS240 PF13610.1 gi|433590101|ref|YP_007279597.1| - 0.0058 16.5 2.9 0.03 14.3 0.0 2.8 3 0 0 3 3 3 1 DDE domain DUF3166 PF11365.3 gi|433590101|ref|YP_007279597.1| - 0.012 16.0 4.7 0.032 14.6 0.2 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF3166) TBPIP PF07106.8 gi|433590101|ref|YP_007279597.1| - 0.18 11.3 5.5 2.5 7.6 0.4 2.2 2 0 0 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) zf-IS66 PF13005.2 gi|433590101|ref|YP_007279597.1| - 0.2 11.6 5.2 1.7 8.6 0.2 2.7 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 SlyX PF04102.7 gi|433590101|ref|YP_007279597.1| - 1.4 9.3 5.7 14 6.1 1.2 2.8 2 0 0 2 2 2 0 SlyX Aminotran_3 PF00202.16 gi|433590102|ref|YP_007279598.1| - 1.1e-63 215.1 0.0 4e-63 213.3 0.0 1.7 1 1 0 1 1 1 1 Aminotransferase class-III DUF46 PF01864.12 gi|433590103|ref|YP_007279599.1| - 1.6e-46 158.4 0.7 1.8e-46 158.2 0.5 1.0 1 0 0 1 1 1 1 Putative integral membrane protein DUF46 CTP_transf_1 PF01148.15 gi|433590103|ref|YP_007279599.1| - 7.2e-07 29.1 0.6 7.2e-07 29.1 0.4 1.7 1 1 0 1 1 1 1 Cytidylyltransferase family Gly-zipper_YMGG PF13441.1 gi|433590103|ref|YP_007279599.1| - 0.49 9.9 9.8 2.8 7.5 0.3 2.5 2 0 0 2 2 2 0 YMGG-like Gly-zipper DUF2076 PF09849.4 gi|433590103|ref|YP_007279599.1| - 1.5 8.8 5.2 3.2 7.7 0.1 2.0 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2076) DUF3487 PF11990.3 gi|433590103|ref|YP_007279599.1| - 8.7 5.7 6.5 10 5.5 1.4 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3487) Peptidase_M24 PF00557.19 gi|433590104|ref|YP_007279600.1| - 3.4e-35 121.5 0.1 5.4e-35 120.8 0.0 1.3 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.13 gi|433590104|ref|YP_007279600.1| - 9.5e-22 77.9 0.0 2.3e-21 76.6 0.0 1.7 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain ELFV_dehydrog PF00208.16 gi|433590105|ref|YP_007279601.1| - 5.2e-69 232.5 0.1 6.7e-69 232.1 0.1 1.1 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.13 gi|433590105|ref|YP_007279601.1| - 3.8e-52 175.3 0.0 6.7e-52 174.5 0.0 1.4 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.14 gi|433590105|ref|YP_007279601.1| - 0.00028 20.0 0.0 0.00044 19.4 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Mycobact_memb PF05423.8 gi|433590105|ref|YP_007279601.1| - 0.1 12.3 0.1 0.22 11.2 0.0 1.5 1 0 0 1 1 1 0 Mycobacterium membrane protein ThiF PF00899.16 gi|433590105|ref|YP_007279601.1| - 0.1 12.3 0.4 1 9.1 0.0 2.4 2 0 0 2 2 2 0 ThiF family DUF502 PF04367.8 gi|433590106|ref|YP_007279602.1| - 2.5e-15 56.1 0.0 4.6e-15 55.3 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF502) 2-Hacid_dh_C PF02826.14 gi|433590107|ref|YP_007279603.1| - 2.4e-54 183.1 0.0 3.8e-54 182.5 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|433590107|ref|YP_007279603.1| - 1e-16 60.5 0.0 1.3e-16 60.2 0.0 1.0 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain F420_oxidored PF03807.12 gi|433590107|ref|YP_007279603.1| - 0.0006 20.1 0.0 0.0018 18.6 0.0 1.8 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent TrkA_N PF02254.13 gi|433590107|ref|YP_007279603.1| - 0.011 15.7 0.1 1.2 9.1 0.0 2.9 3 0 0 3 3 3 0 TrkA-N domain NAD_Gly3P_dh_N PF01210.18 gi|433590107|ref|YP_007279603.1| - 0.02 14.6 0.0 1.2 8.8 0.0 2.7 2 1 1 3 3 3 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus IlvN PF07991.7 gi|433590107|ref|YP_007279603.1| - 0.029 13.7 0.0 0.051 12.9 0.0 1.4 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain ThiF PF00899.16 gi|433590107|ref|YP_007279603.1| - 0.034 13.9 0.5 0.23 11.2 0.1 2.2 2 0 0 2 2 2 0 ThiF family NAD_binding_2 PF03446.10 gi|433590107|ref|YP_007279603.1| - 0.057 13.2 0.0 0.091 12.6 0.0 1.3 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_7 PF13241.1 gi|433590107|ref|YP_007279603.1| - 0.15 12.3 0.0 0.29 11.3 0.0 1.4 1 0 0 1 1 1 0 Putative NAD(P)-binding Lambda_CIII PF02061.11 gi|433590107|ref|YP_007279603.1| - 0.27 11.2 1.8 40 4.3 0.0 3.4 3 0 0 3 3 3 0 Lambda Phage CIII Peptidase_M20 PF01546.23 gi|433590108|ref|YP_007279604.1| - 6.6e-22 77.9 5.8 1e-21 77.2 4.0 1.4 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|433590108|ref|YP_007279604.1| - 3.1e-10 39.7 0.9 7.3e-10 38.5 0.6 1.6 1 0 0 1 1 1 1 Peptidase dimerisation domain PALP PF00291.20 gi|433590109|ref|YP_007279605.1| - 6.7e-75 252.1 9.0 9.6e-75 251.6 6.3 1.2 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Abhydrolase_3 PF07859.8 gi|433590110|ref|YP_007279606.1| - 2.2e-76 256.1 0.1 2.9e-76 255.7 0.0 1.1 1 0 0 1 1 1 1 alpha/beta hydrolase fold COesterase PF00135.23 gi|433590110|ref|YP_007279606.1| - 7.5e-09 34.8 0.2 2.3e-08 33.2 0.2 1.6 1 1 0 1 1 1 1 Carboxylesterase family Abhydrolase_5 PF12695.2 gi|433590110|ref|YP_007279606.1| - 7.6e-09 35.4 0.1 1.1e-08 34.9 0.0 1.4 1 0 0 1 1 1 1 Alpha/beta hydrolase family Peptidase_S9 PF00326.16 gi|433590110|ref|YP_007279606.1| - 0.00033 19.9 0.0 0.02 14.1 0.0 2.2 2 0 0 2 2 2 1 Prolyl oligopeptidase family DUF2424 PF10340.4 gi|433590110|ref|YP_007279606.1| - 0.012 14.3 0.0 0.017 13.7 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2424) DLH PF01738.13 gi|433590110|ref|YP_007279606.1| - 0.044 13.0 0.0 0.13 11.4 0.0 1.8 2 0 0 2 2 2 0 Dienelactone hydrolase family Esterase_phd PF10503.4 gi|433590110|ref|YP_007279606.1| - 0.056 12.6 0.0 0.11 11.7 0.0 1.4 1 0 0 1 1 1 0 Esterase PHB depolymerase Pribosyltran PF00156.22 gi|433590111|ref|YP_007279607.1| - 1.4e-15 57.0 3.4 4.5e-15 55.4 2.4 1.8 1 1 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|433590111|ref|YP_007279607.1| - 0.0005 19.3 0.0 0.00058 19.1 0.0 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.1 gi|433590111|ref|YP_007279607.1| - 0.0033 16.7 0.3 0.0046 16.2 0.2 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase UBA PF00627.26 gi|433590111|ref|YP_007279607.1| - 0.022 14.5 0.4 0.32 10.8 0.0 2.6 2 0 0 2 2 2 0 UBA/TS-N domain CBS PF00571.23 gi|433590111|ref|YP_007279607.1| - 0.023 14.4 0.2 0.065 13.0 0.2 1.8 1 1 0 1 1 1 0 CBS domain Aldolase_II PF00596.16 gi|433590112|ref|YP_007279608.1| - 1.3e-42 145.5 0.9 1.6e-42 145.2 0.6 1.0 1 0 0 1 1 1 1 Class II Aldolase and Adducin N-terminal domain HAD_2 PF13419.1 gi|433590113|ref|YP_007279609.1| - 3.3e-30 105.6 0.0 3.8e-30 105.4 0.0 1.0 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|433590113|ref|YP_007279609.1| - 1.4e-13 51.7 0.0 4.6e-13 50.0 0.0 1.7 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|433590113|ref|YP_007279609.1| - 5e-13 48.5 0.1 1.2e-12 47.3 0.0 1.7 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.2 gi|433590113|ref|YP_007279609.1| - 4.9e-05 23.5 0.0 8.1e-05 22.8 0.0 1.4 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.1 gi|433590113|ref|YP_007279609.1| - 0.00017 21.4 0.0 0.00039 20.2 0.0 1.5 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase DUF1118 PF06549.7 gi|433590113|ref|YP_007279609.1| - 0.12 12.4 0.0 0.19 11.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1118) tRNA-synt_2b PF00587.20 gi|433590114|ref|YP_007279610.1| - 6.6e-39 133.2 0.0 1.1e-38 132.4 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|433590114|ref|YP_007279610.1| - 1.9e-16 59.7 0.4 5.9e-16 58.1 0.3 1.9 1 0 0 1 1 1 1 Anticodon binding domain tRNA_SAD PF07973.9 gi|433590114|ref|YP_007279610.1| - 5.4e-13 48.5 0.0 1e-12 47.6 0.0 1.5 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain TGS PF02824.16 gi|433590114|ref|YP_007279610.1| - 2.6e-10 39.9 0.3 7e-10 38.5 0.0 1.9 2 0 0 2 2 2 1 TGS domain Pribosyltran PF00156.22 gi|433590115|ref|YP_007279611.1| - 3.4e-13 49.3 0.1 6e-13 48.6 0.1 1.4 1 0 0 1 1 1 1 Phosphoribosyl transferase domain HTH_3 PF01381.17 gi|433590115|ref|YP_007279611.1| - 0.0021 17.8 0.0 0.013 15.3 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix MOFRL PF05161.8 gi|433590115|ref|YP_007279611.1| - 0.064 13.3 0.7 0.28 11.3 0.1 2.2 3 0 0 3 3 3 0 MOFRL family B12-binding PF02310.14 gi|433590116|ref|YP_007279612.1| - 3.3e-17 62.4 0.4 4.3e-17 62.1 0.2 1.2 1 1 0 1 1 1 1 B12 binding domain Glyco_transf_28 PF03033.15 gi|433590116|ref|YP_007279612.1| - 0.0019 17.9 0.2 0.0022 17.7 0.1 1.4 1 1 0 1 1 1 1 Glycosyltransferase family 28 N-terminal domain ADH_zinc_N PF00107.21 gi|433590116|ref|YP_007279612.1| - 0.0078 15.7 0.1 0.066 12.7 0.0 2.1 2 1 0 2 2 2 1 Zinc-binding dehydrogenase Peripla_BP_6 PF13458.1 gi|433590116|ref|YP_007279612.1| - 0.03 13.6 0.2 0.072 12.4 0.2 1.7 1 1 0 1 1 1 0 Periplasmic binding protein UPF0180 PF03698.8 gi|433590116|ref|YP_007279612.1| - 0.052 13.3 0.0 0.13 12.1 0.0 1.7 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0180) DNAPolymera_Pol PF11590.3 gi|433590116|ref|YP_007279612.1| - 0.19 11.3 1.4 0.27 10.9 0.1 1.9 2 0 0 2 2 2 0 DNA polymerase catalytic subunit Pol Usp PF00582.21 gi|433590117|ref|YP_007279613.1| - 2e-32 112.3 1.1 2.3e-32 112.1 0.8 1.0 1 0 0 1 1 1 1 Universal stress protein family PSP1 PF04468.7 gi|433590117|ref|YP_007279613.1| - 0.1 12.6 0.0 0.17 11.8 0.0 1.3 1 0 0 1 1 1 0 PSP1 C-terminal conserved region Ribosomal_L15e PF00827.12 gi|433590118|ref|YP_007279614.1| - 9.5e-83 276.4 3.4 1.1e-82 276.1 2.4 1.0 1 0 0 1 1 1 1 Ribosomal L15 Terminase_5 PF06056.7 gi|433590118|ref|YP_007279614.1| - 0.077 12.5 0.6 0.21 11.1 0.4 1.7 1 0 0 1 1 1 0 Putative ATPase subunit of terminase (gpP-like) Pentapeptide_2 PF01469.13 gi|433590118|ref|YP_007279614.1| - 0.17 11.5 0.8 0.34 10.5 0.5 1.4 1 0 0 1 1 1 0 Pentapeptide repeats (8 copies) RIO1 PF01163.17 gi|433590119|ref|YP_007279615.1| - 2.8e-47 160.5 0.1 3.9e-47 160.0 0.1 1.1 1 0 0 1 1 1 1 RIO1 family Rio2_N PF09202.6 gi|433590119|ref|YP_007279615.1| - 2.7e-26 91.4 0.0 5.4e-26 90.4 0.0 1.5 1 0 0 1 1 1 1 Rio2, N-terminal APH PF01636.18 gi|433590119|ref|YP_007279615.1| - 1.9e-06 27.8 0.8 0.0083 15.8 0.0 3.0 1 1 1 2 2 2 2 Phosphotransferase enzyme family Pkinase PF00069.20 gi|433590119|ref|YP_007279615.1| - 0.0022 17.2 0.0 0.0039 16.3 0.0 1.5 1 1 0 1 1 1 1 Protein kinase domain ComZ PF10815.3 gi|433590119|ref|YP_007279615.1| - 0.012 15.3 0.3 0.025 14.3 0.2 1.5 1 0 0 1 1 1 0 ComZ BPL_LplA_LipB PF03099.14 gi|433590120|ref|YP_007279616.1| - 3.5e-15 56.1 0.0 6.2e-15 55.3 0.0 1.3 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family AP_endonuc_2 PF01261.19 gi|433590121|ref|YP_007279617.1| - 1.4e-27 96.4 1.3 6.7e-27 94.1 0.3 2.1 2 0 0 2 2 2 1 Xylose isomerase-like TIM barrel Methyltransf_11 PF08241.7 gi|433590122|ref|YP_007279618.1| - 1.8e-18 66.8 0.0 7.2e-18 64.8 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|433590122|ref|YP_007279618.1| - 3.5e-15 55.8 0.0 5.3e-15 55.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|433590122|ref|YP_007279618.1| - 3.9e-14 52.6 0.0 6.2e-14 52.0 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|433590122|ref|YP_007279618.1| - 5e-10 39.7 0.0 1.3e-09 38.3 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|433590122|ref|YP_007279618.1| - 7.5e-10 39.3 1.1 5.4e-09 36.6 0.8 2.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|433590122|ref|YP_007279618.1| - 1.1e-09 38.5 0.0 2e-09 37.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|433590122|ref|YP_007279618.1| - 1.2e-07 31.1 0.0 2e-07 30.3 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_26 PF13659.1 gi|433590122|ref|YP_007279618.1| - 3.4e-07 30.3 6.2 1.9e-06 27.9 4.3 2.2 1 1 0 1 1 1 1 Methyltransferase domain MetW PF07021.7 gi|433590122|ref|YP_007279618.1| - 1.2e-06 28.0 0.0 2.1e-06 27.2 0.0 1.3 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW MTS PF05175.9 gi|433590122|ref|YP_007279618.1| - 5e-05 22.7 0.0 0.00011 21.6 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_2 PF00891.13 gi|433590122|ref|YP_007279618.1| - 0.00034 19.8 0.1 0.0035 16.5 0.1 2.0 2 0 0 2 2 2 1 O-methyltransferase PCMT PF01135.14 gi|433590122|ref|YP_007279618.1| - 0.00054 19.5 0.0 0.00084 18.9 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) RrnaAD PF00398.15 gi|433590122|ref|YP_007279618.1| - 0.00099 18.2 0.0 0.0013 17.7 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_32 PF13679.1 gi|433590122|ref|YP_007279618.1| - 0.0024 17.5 0.0 0.0042 16.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|433590122|ref|YP_007279618.1| - 0.0038 16.3 0.1 0.0053 15.9 0.1 1.3 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) CMAS PF02353.15 gi|433590122|ref|YP_007279618.1| - 0.0095 15.0 0.0 0.015 14.4 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase FtsJ PF01728.14 gi|433590122|ref|YP_007279618.1| - 0.09 12.7 0.0 0.12 12.3 0.0 1.3 1 1 0 1 1 1 0 FtsJ-like methyltransferase Methyltransf_8 PF05148.10 gi|433590122|ref|YP_007279618.1| - 0.12 11.9 0.2 0.17 11.4 0.1 1.2 1 0 0 1 1 1 0 Hypothetical methyltransferase Methyltransf_29 PF03141.11 gi|433590122|ref|YP_007279618.1| - 0.17 10.1 0.0 0.3 9.3 0.0 1.4 1 1 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase DUF1212 PF06738.7 gi|433590123|ref|YP_007279619.1| - 0.16 11.3 6.9 0.28 10.6 4.8 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1212) S1 PF00575.18 gi|433590124|ref|YP_007279620.1| - 0.044 13.8 0.1 0.096 12.7 0.1 1.5 1 0 0 1 1 1 0 S1 RNA binding domain HTH_10 PF04967.7 gi|433590127|ref|YP_007279623.1| - 8.5e-15 54.0 0.0 1.3e-14 53.4 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4 PF04545.11 gi|433590127|ref|YP_007279623.1| - 0.0014 17.9 0.1 0.0035 16.6 0.0 1.7 1 0 0 1 1 1 1 Sigma-70, region 4 Crp PF00325.15 gi|433590127|ref|YP_007279623.1| - 0.0041 16.5 0.1 0.011 15.2 0.1 1.7 1 0 0 1 1 1 1 Bacterial regulatory proteins, crp family Sigma70_r4_2 PF08281.7 gi|433590127|ref|YP_007279623.1| - 0.061 12.7 0.0 0.42 10.1 0.0 2.2 1 1 0 1 1 1 0 Sigma-70, region 4 AvrL567-A PF11529.3 gi|433590127|ref|YP_007279623.1| - 0.089 12.7 0.0 0.32 10.9 0.0 1.9 3 0 0 3 3 3 0 Melampsora lini avirulence protein AvrL567-A ABC_tran PF00005.22 gi|433590128|ref|YP_007279624.1| - 4e-23 82.2 0.0 5.5e-23 81.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|433590128|ref|YP_007279624.1| - 1.5e-14 54.6 0.2 1.3e-09 38.4 0.0 2.3 1 1 1 2 2 2 2 AAA domain DUF258 PF03193.11 gi|433590128|ref|YP_007279624.1| - 0.015 14.4 0.0 0.024 13.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_29 PF13555.1 gi|433590128|ref|YP_007279624.1| - 0.028 13.9 0.1 0.052 13.0 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_10 PF12846.2 gi|433590128|ref|YP_007279624.1| - 0.042 13.2 0.0 1.4 8.3 0.0 2.2 2 0 0 2 2 2 0 AAA-like domain AAA_23 PF13476.1 gi|433590128|ref|YP_007279624.1| - 0.045 14.0 0.0 0.061 13.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain ABC2_membrane_2 PF12679.2 gi|433590129|ref|YP_007279625.1| - 7e-15 54.6 9.3 9.5e-15 54.1 6.5 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|433590129|ref|YP_007279625.1| - 4.2e-09 35.9 5.4 5.8e-09 35.4 3.7 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|433590129|ref|YP_007279625.1| - 2.2e-06 27.1 0.5 4.2e-06 26.1 0.1 1.6 1 1 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|433590129|ref|YP_007279625.1| - 9.7e-06 24.8 5.5 1.4e-05 24.2 3.8 1.3 1 0 0 1 1 1 1 ABC-2 family transporter protein DUF4234 PF14018.1 gi|433590129|ref|YP_007279625.1| - 0.015 15.0 0.5 4.3 7.1 0.0 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4234) ABC2_membrane PF01061.19 gi|433590129|ref|YP_007279625.1| - 0.015 14.4 6.1 0.011 14.8 3.2 1.5 1 1 0 1 1 1 0 ABC-2 type transporter 7TMR-DISM_7TM PF07695.6 gi|433590129|ref|YP_007279625.1| - 1 8.9 8.9 0.058 13.0 0.5 2.4 2 1 0 2 2 2 0 7TM diverse intracellular signalling SBF PF01758.11 gi|433590130|ref|YP_007279626.1| - 2.1e-12 46.8 13.6 2.1e-12 46.8 9.4 2.2 1 1 1 2 2 2 1 Sodium Bile acid symporter family HTH_20 PF12840.2 gi|433590131|ref|YP_007279627.1| - 0.00041 20.0 2.2 0.0018 17.9 0.5 2.5 2 1 0 2 2 2 1 Helix-turn-helix domain DUF4164 PF13747.1 gi|433590131|ref|YP_007279627.1| - 0.16 12.1 3.5 0.79 9.9 0.7 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4164) Abhydrolase_6 PF12697.2 gi|433590133|ref|YP_007279629.1| - 5e-09 36.3 2.9 6.4e-09 36.0 2.0 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|433590133|ref|YP_007279629.1| - 9e-08 31.9 0.1 1e-07 31.7 0.0 1.3 1 1 0 1 1 1 1 Alpha/beta hydrolase family ATP_bind_3 PF01171.15 gi|433590134|ref|YP_007279630.1| - 5.9e-13 48.7 0.0 8.9e-13 48.1 0.0 1.3 1 0 0 1 1 1 1 PP-loop family PAPS_reduct PF01507.14 gi|433590134|ref|YP_007279630.1| - 1.3e-06 28.3 0.0 2.1e-06 27.7 0.0 1.3 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family NAD_synthase PF02540.12 gi|433590134|ref|YP_007279630.1| - 0.0001 21.3 0.0 0.00017 20.6 0.0 1.3 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.11 gi|433590134|ref|YP_007279630.1| - 0.00074 18.1 0.0 0.0012 17.5 0.0 1.3 1 0 0 1 1 1 1 tRNA methyl transferase DUF2392 PF10288.4 gi|433590134|ref|YP_007279630.1| - 0.014 15.7 0.0 0.026 14.8 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2392) RecR PF02132.10 gi|433590134|ref|YP_007279630.1| - 0.019 14.3 4.8 0.042 13.2 1.2 3.0 3 0 0 3 3 3 0 RecR protein Asn_synthase PF00733.16 gi|433590134|ref|YP_007279630.1| - 0.03 13.8 0.0 0.049 13.1 0.0 1.3 1 0 0 1 1 1 0 Asparagine synthase ThiI PF02568.9 gi|433590134|ref|YP_007279630.1| - 0.089 12.2 0.0 0.18 11.2 0.0 1.4 1 0 0 1 1 1 0 Thiamine biosynthesis protein (ThiI) DUF2387 PF09526.5 gi|433590134|ref|YP_007279630.1| - 3.3 7.7 7.0 3.9 7.4 0.7 3.2 3 0 0 3 3 3 0 Probable metal-binding protein (DUF2387) FtsZ_C PF12327.3 gi|433590135|ref|YP_007279631.1| - 7.2e-35 118.9 0.6 7.2e-35 118.9 0.4 2.8 2 1 1 3 3 3 1 FtsZ family, C-terminal domain Tubulin PF00091.20 gi|433590135|ref|YP_007279631.1| - 1.8e-33 116.2 2.8 1e-32 113.7 1.9 2.1 1 1 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain ThiF PF00899.16 gi|433590135|ref|YP_007279631.1| - 0.021 14.6 0.0 0.076 12.8 0.0 2.0 1 0 0 1 1 1 0 ThiF family RHH_1 PF01402.16 gi|433590136|ref|YP_007279632.1| - 7.3e-08 31.9 0.1 9.6e-08 31.6 0.1 1.2 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family DZR PF12773.2 gi|433590137|ref|YP_007279633.1| - 3.4e-10 39.5 29.1 6.5e-07 29.0 7.3 2.1 1 1 2 3 3 3 3 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|433590137|ref|YP_007279633.1| - 8.1e-09 34.4 12.4 8.3e-06 24.8 2.3 2.4 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|433590137|ref|YP_007279633.1| - 2.4e-08 33.2 9.9 0.00026 20.3 3.8 2.3 2 0 0 2 2 2 2 zinc-ribbon domain RHH_1 PF01402.16 gi|433590137|ref|YP_007279633.1| - 0.0001 22.0 5.7 0.0011 18.7 1.3 3.3 2 1 0 2 2 2 1 Ribbon-helix-helix protein, copG family Prok-RING_1 PF14446.1 gi|433590137|ref|YP_007279633.1| - 0.0014 18.2 2.4 0.0014 18.2 1.6 2.3 1 1 1 2 2 2 1 Prokaryotic RING finger family 1 PolC_DP2 PF03833.8 gi|433590137|ref|YP_007279633.1| - 0.0028 15.4 0.7 0.0029 15.3 0.5 1.1 1 0 0 1 1 1 1 DNA polymerase II large subunit DP2 Nudix_N_2 PF14803.1 gi|433590137|ref|YP_007279633.1| - 0.0035 17.0 13.8 0.16 11.7 0.2 3.9 3 1 1 4 4 4 2 Nudix N-terminal Cys_rich_KTR PF14205.1 gi|433590137|ref|YP_007279633.1| - 0.0072 15.7 0.9 1.6 8.2 0.1 2.4 2 0 0 2 2 2 1 Cysteine-rich KTR zf-NADH-PPase PF09297.6 gi|433590137|ref|YP_007279633.1| - 0.18 11.3 11.7 0.63 9.5 0.1 3.4 3 0 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain Zn-ribbon_8 PF09723.5 gi|433590137|ref|YP_007279633.1| - 0.57 10.1 11.9 1.7 8.6 2.6 3.4 2 2 1 3 3 3 0 Zinc ribbon domain zinc-ribbons_6 PF07191.7 gi|433590137|ref|YP_007279633.1| - 0.6 9.9 8.1 0.32 10.8 3.1 2.0 1 1 1 2 2 2 0 zinc-ribbons PSK_trans_fac PF07704.6 gi|433590137|ref|YP_007279633.1| - 0.74 10.5 7.4 0.31 11.7 2.6 2.2 2 1 0 2 2 2 0 Rv0623-like transcription factor NOB1_Zn_bind PF08772.6 gi|433590137|ref|YP_007279633.1| - 1 9.2 10.8 2.9 7.7 2.7 2.4 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zf-UBR PF02207.15 gi|433590137|ref|YP_007279633.1| - 1.2 8.8 8.5 3.9 7.2 5.9 1.8 1 1 0 1 1 1 0 Putative zinc finger in N-recognin (UBR box) TF_Zn_Ribbon PF08271.7 gi|433590137|ref|YP_007279633.1| - 1.3 8.3 11.5 2.1 7.7 0.1 3.3 2 1 1 3 3 3 0 TFIIB zinc-binding DUF2321 PF10083.4 gi|433590137|ref|YP_007279633.1| - 1.4 8.3 4.8 0.61 9.5 0.9 2.0 2 1 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2321) OrfB_Zn_ribbon PF07282.6 gi|433590137|ref|YP_007279633.1| - 1.5 8.5 9.5 0.11 12.1 1.0 2.6 1 1 1 2 2 2 0 Putative transposase DNA-binding domain UPF0547 PF10571.4 gi|433590137|ref|YP_007279633.1| - 2.4 7.9 9.9 2.4 7.9 0.1 2.6 2 1 0 2 2 2 0 Uncharacterised protein family UPF0547 Sgf11 PF08209.6 gi|433590137|ref|YP_007279633.1| - 3.3 7.1 5.4 5 6.5 0.1 2.6 3 0 0 3 3 3 0 Sgf11 (transcriptional regulation protein) HypA PF01155.14 gi|433590137|ref|YP_007279633.1| - 3.5 7.3 9.3 1.3 8.6 2.6 2.3 1 1 1 2 2 2 0 Hydrogenase expression/synthesis hypA family TerY-C PF15616.1 gi|433590137|ref|YP_007279633.1| - 4.8 7.1 8.3 15 5.4 5.7 1.8 1 1 0 1 1 1 0 TerY-C metal binding domain zf-C3HC4_3 PF13920.1 gi|433590137|ref|YP_007279633.1| - 6 6.6 7.4 1.8 8.2 0.8 2.2 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) DUF2191 PF09957.4 gi|433590137|ref|YP_007279633.1| - 6.2 6.7 7.0 0.91 9.3 1.2 2.3 2 1 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2191) YtkA PF13115.1 gi|433590138|ref|YP_007279634.1| - 2.4e-07 31.0 0.2 3.9e-07 30.3 0.1 1.3 1 0 0 1 1 1 1 YtkA-like FixH PF05751.6 gi|433590138|ref|YP_007279634.1| - 0.0028 17.4 0.0 0.0045 16.7 0.0 1.3 1 0 0 1 1 1 1 FixH ABC_tran PF00005.22 gi|433590139|ref|YP_007279635.1| - 4.3e-32 111.2 0.0 6.4e-32 110.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_29 PF13555.1 gi|433590139|ref|YP_007279635.1| - 5.2e-07 29.0 0.1 9.1e-07 28.3 0.1 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_21 PF13304.1 gi|433590139|ref|YP_007279635.1| - 8.7e-07 29.1 0.0 0.0097 15.9 0.0 2.1 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|433590139|ref|YP_007279635.1| - 1.6e-06 27.5 0.0 0.00044 19.5 0.0 2.4 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_19 PF13245.1 gi|433590139|ref|YP_007279635.1| - 0.0025 17.5 3.0 0.0035 17.0 0.4 2.4 2 0 0 2 2 2 1 Part of AAA domain ArgK PF03308.11 gi|433590139|ref|YP_007279635.1| - 0.003 16.3 0.7 0.006 15.3 0.5 1.5 1 0 0 1 1 1 1 ArgK protein AAA_17 PF13207.1 gi|433590139|ref|YP_007279635.1| - 0.0046 17.7 0.0 0.0087 16.8 0.0 1.6 1 0 0 1 1 1 1 AAA domain NTPase_1 PF03266.10 gi|433590139|ref|YP_007279635.1| - 0.0056 16.4 0.1 0.24 11.1 0.0 2.2 2 0 0 2 2 2 1 NTPase AAA_30 PF13604.1 gi|433590139|ref|YP_007279635.1| - 0.0086 15.6 1.3 0.027 14.0 0.9 1.9 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|433590139|ref|YP_007279635.1| - 0.011 15.9 0.0 0.039 14.0 0.0 1.8 1 1 0 1 1 1 0 AAA domain AAA_23 PF13476.1 gi|433590139|ref|YP_007279635.1| - 0.011 16.0 0.0 0.015 15.6 0.0 1.1 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|433590139|ref|YP_007279635.1| - 0.019 14.3 0.1 0.054 12.8 0.0 1.9 2 0 0 2 2 2 0 AAA domain SbcCD_C PF13558.1 gi|433590139|ref|YP_007279635.1| - 0.03 14.2 0.1 0.27 11.1 0.1 2.4 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_16 PF13191.1 gi|433590139|ref|YP_007279635.1| - 0.031 14.2 3.1 0.13 12.2 2.1 2.0 1 1 0 1 1 1 0 AAA ATPase domain AAA PF00004.24 gi|433590139|ref|YP_007279635.1| - 0.033 14.3 0.1 0.098 12.8 0.0 1.8 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.1 gi|433590139|ref|YP_007279635.1| - 0.036 13.9 0.4 0.077 12.8 0.1 1.8 2 1 0 2 2 2 0 AAA domain AAA_18 PF13238.1 gi|433590139|ref|YP_007279635.1| - 0.068 13.4 0.0 0.15 12.3 0.0 1.6 2 0 0 2 2 2 0 AAA domain MacB_PCD PF12704.2 gi|433590140|ref|YP_007279636.1| - 1.4e-11 44.4 0.2 1.4e-11 44.4 0.1 1.7 2 0 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.16 gi|433590140|ref|YP_007279636.1| - 1.1e-06 28.4 7.7 1.1e-06 28.4 5.3 2.1 2 0 0 2 2 2 1 FtsX-like permease family MacB_PCD PF12704.2 gi|433590141|ref|YP_007279637.1| - 2.3e-25 89.5 0.2 2.3e-25 89.5 0.1 2.0 2 0 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.16 gi|433590141|ref|YP_007279637.1| - 3.3e-12 46.2 8.8 3.3e-12 46.2 6.1 2.0 2 0 0 2 2 2 1 FtsX-like permease family CDC48_N PF02359.13 gi|433590141|ref|YP_007279637.1| - 0.037 13.9 0.0 0.084 12.8 0.0 1.6 1 0 0 1 1 1 0 Cell division protein 48 (CDC48), N-terminal domain YjgP_YjgQ PF03739.9 gi|433590141|ref|YP_007279637.1| - 1.4 7.5 7.4 0.27 9.9 2.3 1.7 2 0 0 2 2 2 0 Predicted permease YjgP/YjgQ family Pneumo_att_G PF05539.6 gi|433590142|ref|YP_007279638.1| - 0.027 13.8 0.0 0.027 13.8 0.0 1.4 2 0 0 2 2 2 0 Pneumovirinae attachment membrane glycoprotein G DEAD_assoc PF08494.6 gi|433590143|ref|YP_007279639.1| - 2e-40 138.5 0.6 3.7e-40 137.6 0.0 1.8 2 0 0 2 2 2 1 DEAD/H associated DEAD PF00270.24 gi|433590143|ref|YP_007279639.1| - 8.6e-29 100.1 0.0 2.4e-28 98.7 0.0 1.8 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|433590143|ref|YP_007279639.1| - 1.7e-18 66.2 0.0 4.5e-18 64.8 0.0 1.8 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|433590143|ref|YP_007279639.1| - 1.2e-06 28.5 0.0 2.4e-06 27.5 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_25 PF13481.1 gi|433590143|ref|YP_007279639.1| - 0.00032 20.1 0.1 0.0012 18.3 0.1 2.0 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|433590143|ref|YP_007279639.1| - 0.00035 20.2 0.3 0.0078 15.9 0.0 3.2 3 1 0 3 3 3 1 Part of AAA domain SNF2_N PF00176.18 gi|433590143|ref|YP_007279639.1| - 0.00055 18.8 0.0 0.0058 15.4 0.0 2.0 2 0 0 2 2 2 1 SNF2 family N-terminal domain UvrD-helicase PF00580.16 gi|433590143|ref|YP_007279639.1| - 0.0081 15.4 0.0 0.016 14.5 0.0 1.4 1 0 0 1 1 1 1 UvrD/REP helicase N-terminal domain Zn-ribbon_8 PF09723.5 gi|433590143|ref|YP_007279639.1| - 0.021 14.7 1.9 0.045 13.7 1.3 1.5 1 0 0 1 1 1 0 Zinc ribbon domain PS_Dcarbxylase PF02666.10 gi|433590144|ref|YP_007279640.1| - 4.7e-22 78.2 0.0 2.4e-18 66.2 0.0 2.4 1 1 1 2 2 2 2 Phosphatidylserine decarboxylase CbiA PF01656.18 gi|433590146|ref|YP_007279642.1| - 7.4e-20 71.1 0.0 9.8e-20 70.7 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.4 gi|433590146|ref|YP_007279642.1| - 5.3e-05 23.0 0.0 0.0001 22.0 0.0 1.4 1 0 0 1 1 1 1 ParA/MinD ATPase like AAA_31 PF13614.1 gi|433590146|ref|YP_007279642.1| - 0.00013 21.8 0.0 0.00089 19.2 0.0 2.0 1 1 0 1 1 1 1 AAA domain YhjQ PF06564.7 gi|433590146|ref|YP_007279642.1| - 0.0017 17.7 0.1 0.12 11.6 0.0 2.1 2 0 0 2 2 2 1 YhjQ protein AAA_33 PF13671.1 gi|433590146|ref|YP_007279642.1| - 0.0024 17.7 5.6 0.42 10.4 3.9 2.6 1 1 0 1 1 1 1 AAA domain MipZ PF09140.6 gi|433590146|ref|YP_007279642.1| - 0.0069 15.4 0.2 0.081 11.9 0.1 2.1 1 1 0 1 1 1 1 ATPase MipZ AAA_25 PF13481.1 gi|433590146|ref|YP_007279642.1| - 0.0078 15.6 1.8 0.014 14.7 0.2 2.3 2 1 0 2 2 2 1 AAA domain ArsA_ATPase PF02374.10 gi|433590146|ref|YP_007279642.1| - 0.17 10.9 0.1 0.44 9.5 0.2 1.6 2 0 0 2 2 2 0 Anion-transporting ATPase CbiA PF01656.18 gi|433590147|ref|YP_007279643.1| - 3.4e-22 78.8 0.1 5.5e-22 78.1 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.1 gi|433590147|ref|YP_007279643.1| - 1.1e-07 31.6 2.2 4.4e-05 23.1 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_25 PF13481.1 gi|433590147|ref|YP_007279643.1| - 1.4e-06 27.9 1.4 0.16 11.3 0.0 3.4 3 0 0 3 3 3 3 AAA domain ParA PF10609.4 gi|433590147|ref|YP_007279643.1| - 2e-06 27.5 0.0 7.7e-06 25.7 0.0 1.9 2 0 0 2 2 2 1 ParA/MinD ATPase like GTP_EFTU PF00009.22 gi|433590147|ref|YP_007279643.1| - 0.0007 19.0 0.0 0.0013 18.1 0.0 1.4 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain AAA_31 PF13614.1 gi|433590147|ref|YP_007279643.1| - 0.00098 19.0 0.0 0.0041 17.0 0.0 2.0 1 1 0 1 1 1 1 AAA domain MipZ PF09140.6 gi|433590147|ref|YP_007279643.1| - 0.0013 17.8 0.0 0.0021 17.1 0.0 1.3 1 0 0 1 1 1 1 ATPase MipZ KaiC PF06745.8 gi|433590147|ref|YP_007279643.1| - 0.0056 15.8 0.0 3.7 6.6 0.0 2.9 4 0 0 4 4 4 2 KaiC AP_endonuc_2 PF01261.19 gi|433590147|ref|YP_007279643.1| - 0.01 15.1 0.1 2.4 7.3 0.0 2.4 2 0 0 2 2 2 0 Xylose isomerase-like TIM barrel FTHFS PF01268.14 gi|433590147|ref|YP_007279643.1| - 0.026 12.5 0.4 0.036 12.0 0.3 1.2 1 0 0 1 1 1 0 Formate--tetrahydrofolate ligase FMN_red PF03358.10 gi|433590147|ref|YP_007279643.1| - 0.026 14.0 0.0 0.06 12.8 0.0 1.7 1 0 0 1 1 1 0 NADPH-dependent FMN reductase PQQ_2 PF13360.1 gi|433590148|ref|YP_007279644.1| - 1.7e-39 135.7 0.7 8.1e-13 48.3 0.0 3.5 1 1 2 3 3 3 3 PQQ-like domain PQQ_3 PF13570.1 gi|433590148|ref|YP_007279644.1| - 4.6e-32 109.3 4.4 0.0006 20.0 0.1 8.3 8 0 0 8 8 8 7 PQQ-like domain PQQ PF01011.16 gi|433590148|ref|YP_007279644.1| - 8.8e-19 66.0 0.3 0.0039 16.6 0.0 6.0 6 0 0 6 6 6 4 PQQ enzyme repeat DUF4394 PF14339.1 gi|433590148|ref|YP_007279644.1| - 0.03 13.6 0.3 5.3 6.2 0.0 3.0 3 1 0 3 3 3 0 Domain of unknown function (DUF4394) CNH PF00780.17 gi|433590148|ref|YP_007279644.1| - 0.19 11.0 0.0 1.4 8.2 0.0 2.3 3 0 0 3 3 3 0 CNH domain GST_C PF00043.20 gi|433590153|ref|YP_007279649.1| - 0.2 11.6 0.0 0.53 10.3 0.0 1.7 2 0 0 2 2 2 0 Glutathione S-transferase, C-terminal domain T2SE PF00437.15 gi|433590154|ref|YP_007279650.1| - 8.5e-35 119.9 0.1 1.3e-34 119.3 0.0 1.1 1 0 0 1 1 1 1 Type II/IV secretion system protein ABC_tran PF00005.22 gi|433590154|ref|YP_007279650.1| - 0.00042 20.6 0.0 0.00074 19.8 0.0 1.4 1 0 0 1 1 1 1 ABC transporter cobW PF02492.14 gi|433590154|ref|YP_007279650.1| - 0.02 14.3 0.0 0.043 13.2 0.0 1.6 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_29 PF13555.1 gi|433590154|ref|YP_007279650.1| - 0.025 14.1 0.1 0.067 12.7 0.0 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain FtsK_SpoIIIE PF01580.13 gi|433590154|ref|YP_007279650.1| - 0.026 13.9 0.0 0.057 12.8 0.0 1.5 1 0 0 1 1 1 0 FtsK/SpoIIIE family Zeta_toxin PF06414.7 gi|433590154|ref|YP_007279650.1| - 0.03 13.4 0.0 0.057 12.4 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin AAA_14 PF13173.1 gi|433590154|ref|YP_007279650.1| - 0.065 13.1 0.0 0.12 12.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain TrwB_AAD_bind PF10412.4 gi|433590154|ref|YP_007279650.1| - 0.19 10.3 0.0 0.28 9.7 0.0 1.1 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_24 PF13479.1 gi|433590154|ref|YP_007279650.1| - 0.2 11.2 0.0 0.3 10.6 0.0 1.2 1 0 0 1 1 1 0 AAA domain DUF4235 PF14019.1 gi|433590154|ref|YP_007279650.1| - 0.51 10.2 5.5 0.68 9.8 2.3 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF4235) DUF4164 PF13747.1 gi|433590156|ref|YP_007279652.1| - 0.0082 16.2 6.9 0.64 10.1 0.0 3.2 1 1 0 2 2 2 1 Domain of unknown function (DUF4164) Cast PF10174.4 gi|433590156|ref|YP_007279652.1| - 0.055 11.5 0.3 0.067 11.2 0.2 1.2 1 0 0 1 1 1 0 RIM-binding protein of the cytomatrix active zone BLOC1_2 PF10046.4 gi|433590156|ref|YP_007279652.1| - 0.059 13.5 0.0 16 5.7 0.0 2.7 1 1 2 3 3 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Dynamitin PF04912.9 gi|433590156|ref|YP_007279652.1| - 0.06 12.1 0.3 1.7 7.3 0.2 2.1 1 1 1 2 2 2 0 Dynamitin Myosin_tail_1 PF01576.14 gi|433590156|ref|YP_007279652.1| - 0.073 10.7 1.1 0.089 10.5 0.8 1.0 1 0 0 1 1 1 0 Myosin tail NPV_P10 PF05531.7 gi|433590156|ref|YP_007279652.1| - 0.094 12.9 0.1 1.2 9.4 0.0 2.2 1 1 1 2 2 2 0 Nucleopolyhedrovirus P10 protein Reo_sigmaC PF04582.7 gi|433590156|ref|YP_007279652.1| - 0.1 11.7 0.0 0.15 11.2 0.0 1.2 1 0 0 1 1 1 0 Reovirus sigma C capsid protein DnaB_bind PF10410.4 gi|433590156|ref|YP_007279652.1| - 0.12 12.3 3.3 0.29 11.1 0.6 2.8 2 1 0 2 2 2 0 DnaB-helicase binding domain of primase Lebercilin PF15619.1 gi|433590156|ref|YP_007279652.1| - 0.14 11.5 0.0 0.21 11.0 0.0 1.3 1 0 0 1 1 1 0 Ciliary protein causing Leber congenital amaurosis disease Tropomyosin PF00261.15 gi|433590156|ref|YP_007279652.1| - 0.17 10.9 6.7 8.1 5.4 4.7 2.7 1 1 0 1 1 1 0 Tropomyosin EamA PF00892.15 gi|433590158|ref|YP_007279654.1| - 6e-28 97.4 25.0 1.9e-15 57.0 5.2 2.2 2 0 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|433590158|ref|YP_007279654.1| - 0.72 10.0 40.7 0.026 14.7 7.3 3.9 1 1 1 3 3 3 0 Multidrug resistance efflux transporter UPF0233 PF06781.7 gi|433590158|ref|YP_007279654.1| - 1.7 8.3 6.2 2 8.1 0.2 3.3 3 0 0 3 3 3 0 Uncharacterised protein family (UPF0233) TPT PF03151.11 gi|433590158|ref|YP_007279654.1| - 2.7 7.6 19.6 0.058 13.0 4.4 2.5 2 2 0 2 2 2 0 Triose-phosphate Transporter family ABC_tran PF00005.22 gi|433590160|ref|YP_007279656.1| - 3.1e-33 114.9 0.0 4.9e-33 114.3 0.0 1.3 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|433590160|ref|YP_007279656.1| - 5.9e-20 71.3 0.3 1.1e-19 70.5 0.2 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|433590160|ref|YP_007279656.1| - 1.1e-08 35.3 0.0 1.7e-05 24.9 0.0 2.2 1 1 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|433590160|ref|YP_007279656.1| - 0.0015 17.7 0.0 0.017 14.3 0.0 1.9 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|433590160|ref|YP_007279656.1| - 0.0042 17.2 0.1 0.02 15.0 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|433590160|ref|YP_007279656.1| - 0.018 14.5 0.0 0.03 13.8 0.0 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|433590160|ref|YP_007279656.1| - 0.025 14.5 1.3 0.082 12.8 0.9 1.9 1 1 0 1 1 1 0 AAA ATPase domain SbcCD_C PF13558.1 gi|433590160|ref|YP_007279656.1| - 0.035 14.0 0.1 0.16 11.8 0.1 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_5 PF07728.9 gi|433590160|ref|YP_007279656.1| - 0.085 12.5 1.0 3.6 7.3 0.1 2.7 3 0 0 3 3 3 0 AAA domain (dynein-related subfamily) ABC_tran PF00005.22 gi|433590161|ref|YP_007279657.1| - 1.7e-23 83.4 0.0 2.9e-23 82.6 0.0 1.4 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|433590161|ref|YP_007279657.1| - 1.5e-15 57.2 0.3 9.2e-14 51.5 0.2 2.7 1 1 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|433590161|ref|YP_007279657.1| - 1e-08 35.5 0.2 9.1e-08 32.4 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|433590161|ref|YP_007279657.1| - 0.00019 21.5 0.0 0.051 13.7 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_10 PF12846.2 gi|433590161|ref|YP_007279657.1| - 0.00071 19.1 0.0 0.0017 17.8 0.0 1.6 1 1 0 1 1 1 1 AAA-like domain AAA_16 PF13191.1 gi|433590161|ref|YP_007279657.1| - 0.023 14.6 2.0 0.11 12.4 0.9 2.5 1 1 1 2 2 2 0 AAA ATPase domain AAA_15 PF13175.1 gi|433590161|ref|YP_007279657.1| - 0.034 13.2 0.3 0.074 12.0 0.0 1.6 2 0 0 2 2 2 0 AAA ATPase domain AAA_25 PF13481.1 gi|433590161|ref|YP_007279657.1| - 0.071 12.5 0.0 1.7 8.0 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.1 gi|433590161|ref|YP_007279657.1| - 0.071 12.6 0.0 0.13 11.7 0.0 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF87 PF01935.12 gi|433590161|ref|YP_007279657.1| - 0.17 11.6 0.0 0.36 10.6 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function DUF87 NB-ARC PF00931.17 gi|433590161|ref|YP_007279657.1| - 0.24 10.2 0.1 0.34 9.7 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain BPD_transp_1 PF00528.17 gi|433590162|ref|YP_007279658.1| - 7.5e-31 107.0 6.6 7.5e-31 107.0 4.5 2.1 2 0 0 2 2 2 2 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|433590162|ref|YP_007279658.1| - 3.4e-05 23.1 0.0 3.4e-05 23.1 0.0 2.7 4 0 0 4 4 4 1 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.17 gi|433590163|ref|YP_007279659.1| - 1.2e-42 145.4 12.5 2.9e-42 144.2 8.7 1.7 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component Sigma_reg_N PF13800.1 gi|433590163|ref|YP_007279659.1| - 1.1 9.3 6.0 11 6.1 0.1 3.3 3 0 0 3 3 3 0 Sigma factor regulator N-terminal SBP_bac_5 PF00496.17 gi|433590164|ref|YP_007279660.1| - 2.2e-61 207.7 0.1 3.4e-61 207.1 0.1 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle TAT_signal PF10518.4 gi|433590164|ref|YP_007279660.1| - 0.2 11.7 2.5 0.41 10.7 1.7 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence DDE_Tnp_IS66 PF03050.9 gi|433590165|ref|YP_007279661.1| - 2.8e-52 177.5 0.0 2.8e-52 177.5 0.0 2.1 2 0 0 2 2 2 1 Transposase IS66 family SlyX PF04102.7 gi|433590165|ref|YP_007279661.1| - 8.4e-09 35.6 7.0 2e-08 34.4 4.8 1.7 1 0 0 1 1 1 1 SlyX zf-IS66 PF13005.2 gi|433590165|ref|YP_007279661.1| - 0.00066 19.5 5.8 0.00066 19.5 4.0 2.5 2 0 0 2 2 1 1 zinc-finger binding domain of transposase IS66 Atg14 PF10186.4 gi|433590165|ref|YP_007279661.1| - 0.0012 17.9 8.2 0.0019 17.1 5.7 1.3 1 0 0 1 1 1 1 UV radiation resistance protein and autophagy-related subunit 14 Fmp27_WPPW PF10359.4 gi|433590165|ref|YP_007279661.1| - 0.0026 16.2 7.0 0.0037 15.7 4.8 1.1 1 0 0 1 1 1 1 RNA pol II promoter Fmp27 protein domain MscS_porin PF12795.2 gi|433590165|ref|YP_007279661.1| - 0.0057 16.0 8.0 0.0091 15.3 5.6 1.3 1 0 0 1 1 1 1 Mechanosensitive ion channel porin domain DUF16 PF01519.11 gi|433590165|ref|YP_007279661.1| - 0.0057 16.8 5.1 0.013 15.7 3.6 1.5 1 0 0 1 1 1 1 Protein of unknown function DUF16 ATG16 PF08614.6 gi|433590165|ref|YP_007279661.1| - 0.013 15.3 10.5 0.025 14.4 7.2 1.4 1 0 0 1 1 1 0 Autophagy protein 16 (ATG16) Cortex-I_coil PF09304.5 gi|433590165|ref|YP_007279661.1| - 0.016 15.1 8.9 0.034 14.1 6.2 1.4 1 0 0 1 1 1 0 Cortexillin I, coiled coil IncA PF04156.9 gi|433590165|ref|YP_007279661.1| - 0.02 14.4 12.1 0.045 13.3 8.4 1.5 1 0 0 1 1 1 0 IncA protein HSBP1 PF06825.7 gi|433590165|ref|YP_007279661.1| - 0.022 14.3 6.1 0.49 10.0 1.7 2.5 2 0 0 2 2 2 0 Heat shock factor binding protein 1 DZR PF12773.2 gi|433590165|ref|YP_007279661.1| - 0.028 14.2 2.8 0.069 12.9 2.0 1.6 1 0 0 1 1 1 0 Double zinc ribbon AAA_13 PF13166.1 gi|433590165|ref|YP_007279661.1| - 0.039 12.4 7.5 0.053 11.9 5.2 1.1 1 0 0 1 1 1 0 AAA domain Cast PF10174.4 gi|433590165|ref|YP_007279661.1| - 0.045 11.7 10.2 0.063 11.3 7.0 1.1 1 0 0 1 1 1 0 RIM-binding protein of the cytomatrix active zone GAS PF13851.1 gi|433590165|ref|YP_007279661.1| - 0.066 12.3 9.5 0.11 11.6 6.6 1.3 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding DDE_Tnp_IS240 PF13610.1 gi|433590165|ref|YP_007279661.1| - 0.074 13.0 3.1 0.19 11.6 0.0 2.5 2 1 0 2 2 2 0 DDE domain Spc7 PF08317.6 gi|433590165|ref|YP_007279661.1| - 0.084 11.5 8.5 0.17 10.5 5.9 1.4 1 0 0 1 1 1 0 Spc7 kinetochore protein Mnd1 PF03962.10 gi|433590165|ref|YP_007279661.1| - 0.087 12.4 9.9 0.26 10.9 6.8 1.7 1 0 0 1 1 1 0 Mnd1 family DUF3552 PF12072.3 gi|433590165|ref|YP_007279661.1| - 0.089 11.9 15.5 0.15 11.2 10.7 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3552) TMF_DNA_bd PF12329.3 gi|433590165|ref|YP_007279661.1| - 0.11 12.3 12.3 0.25 11.1 8.5 1.6 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding TMCO5 PF14992.1 gi|433590165|ref|YP_007279661.1| - 0.14 11.3 8.7 0.23 10.5 6.0 1.3 1 0 0 1 1 1 0 TMCO5 family Fib_alpha PF08702.5 gi|433590165|ref|YP_007279661.1| - 0.14 12.2 5.0 0.31 11.1 3.5 1.5 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family FliD_C PF07195.7 gi|433590165|ref|YP_007279661.1| - 0.17 11.1 4.2 0.31 10.3 2.9 1.4 1 0 0 1 1 1 0 Flagellar hook-associated protein 2 C-terminus Flagellin_C PF00700.16 gi|433590165|ref|YP_007279661.1| - 0.24 11.5 1.8 0.48 10.6 1.3 1.4 1 0 0 1 1 1 0 Bacterial flagellin C-terminal helical region Allexi_40kDa PF05549.6 gi|433590165|ref|YP_007279661.1| - 0.27 10.5 2.8 0.46 9.7 1.9 1.3 1 0 0 1 1 1 0 Allexivirus 40kDa protein Fzo_mitofusin PF04799.8 gi|433590165|ref|YP_007279661.1| - 0.36 10.1 3.5 0.67 9.3 2.5 1.3 1 0 0 1 1 1 0 fzo-like conserved region DUF3584 PF12128.3 gi|433590165|ref|YP_007279661.1| - 0.42 7.8 8.1 0.62 7.3 5.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) DUF812 PF05667.6 gi|433590165|ref|YP_007279661.1| - 0.44 8.9 8.7 0.65 8.4 6.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF812) DASH_Spc34 PF08657.5 gi|433590165|ref|YP_007279661.1| - 0.49 10.0 14.2 2.1 7.9 6.7 2.4 1 1 1 2 2 2 0 DASH complex subunit Spc34 COG2 PF06148.6 gi|433590165|ref|YP_007279661.1| - 0.61 9.9 5.2 1.1 9.0 3.6 1.4 1 0 0 1 1 1 0 COG (conserved oligomeric Golgi) complex component, COG2 Med9 PF07544.8 gi|433590165|ref|YP_007279661.1| - 0.89 9.3 19.2 12 5.7 7.6 3.2 2 1 1 3 3 3 0 RNA polymerase II transcription mediator complex subunit 9 DUF536 PF04394.9 gi|433590165|ref|YP_007279661.1| - 0.93 9.2 15.4 1.6 8.4 10.7 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF536 MIF4G_like_2 PF09090.6 gi|433590165|ref|YP_007279661.1| - 1 8.5 5.5 0.96 8.6 2.9 1.6 2 0 0 2 2 1 0 MIF4G like DUF1465 PF07323.7 gi|433590165|ref|YP_007279661.1| - 1.1 8.8 7.1 2.1 7.8 1.7 2.9 3 0 0 3 3 2 0 Protein of unknown function (DUF1465) DUF1664 PF07889.7 gi|433590165|ref|YP_007279661.1| - 1.8 8.3 4.7 3.8 7.3 3.2 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) V_ATPase_I PF01496.14 gi|433590165|ref|YP_007279661.1| - 2.5 5.8 6.5 3.5 5.3 4.5 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family FemAB PF02388.11 gi|433590165|ref|YP_007279661.1| - 3 6.4 6.9 4.3 5.8 4.8 1.1 1 0 0 1 1 1 0 FemAB family TMPIT PF07851.8 gi|433590165|ref|YP_007279661.1| - 3.8 6.4 4.1 6 5.8 2.9 1.2 1 0 0 1 1 1 0 TMPIT-like protein BTV_NS2 PF04514.7 gi|433590165|ref|YP_007279661.1| - 4 6.2 9.8 6.3 5.5 6.8 1.2 1 0 0 1 1 1 0 Bluetongue virus non-structural protein NS2 DUF3450 PF11932.3 gi|433590165|ref|YP_007279661.1| - 4.6 6.4 12.1 0.89 8.7 5.6 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3450) DUF4337 PF14235.1 gi|433590165|ref|YP_007279661.1| - 5.5 6.8 6.2 9.8 5.9 4.3 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4337) DUF4446 PF14584.1 gi|433590165|ref|YP_007279661.1| - 9 6.1 6.0 19 5.0 4.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF4446) RNase_H PF00075.19 gi|433590166|ref|YP_007279662.1| - 0.002 18.4 0.0 0.0025 18.1 0.0 1.1 1 0 0 1 1 1 1 RNase H DUF2240 PF09999.4 gi|433590167|ref|YP_007279663.1| - 3.3e-50 169.2 0.0 3.7e-50 169.0 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2240) HAD_2 PF13419.1 gi|433590169|ref|YP_007279665.1| - 7.6e-32 110.9 0.0 9.3e-32 110.6 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|433590169|ref|YP_007279665.1| - 6.1e-13 49.6 0.6 1.8e-12 48.1 0.4 1.7 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|433590169|ref|YP_007279665.1| - 6.1e-10 38.6 0.4 4.6e-09 35.8 0.1 2.4 2 0 0 2 2 2 1 HAD-hyrolase-like Acid_PPase PF12689.2 gi|433590169|ref|YP_007279665.1| - 0.066 12.8 0.0 0.1 12.2 0.0 1.3 1 0 0 1 1 1 0 Acid Phosphatase Hydrolase_6 PF13344.1 gi|433590169|ref|YP_007279665.1| - 0.087 12.7 0.0 0.2 11.5 0.0 1.6 1 0 0 1 1 1 0 Haloacid dehalogenase-like hydrolase Methyltransf_11 PF08241.7 gi|433590171|ref|YP_007279667.1| - 1e-20 73.9 0.0 1.9e-20 73.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|433590171|ref|YP_007279667.1| - 9.9e-18 64.7 0.1 1.6e-17 64.1 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|433590171|ref|YP_007279667.1| - 4.7e-17 61.8 0.0 6.9e-17 61.3 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_26 PF13659.1 gi|433590171|ref|YP_007279667.1| - 9.7e-16 57.8 1.0 2e-15 56.8 0.7 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|433590171|ref|YP_007279667.1| - 1e-15 57.5 0.0 1.3e-15 57.2 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|433590171|ref|YP_007279667.1| - 7.4e-14 51.9 0.1 1.8e-13 50.6 0.0 1.7 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|433590171|ref|YP_007279667.1| - 1.9e-11 43.9 0.0 2.6e-11 43.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|433590171|ref|YP_007279667.1| - 1.3e-08 34.6 0.0 1.9e-08 34.1 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_12 PF08242.7 gi|433590171|ref|YP_007279667.1| - 2e-08 34.6 0.0 3.1e-08 33.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|433590171|ref|YP_007279667.1| - 9.6e-07 28.3 0.0 1.5e-06 27.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain PCMT PF01135.14 gi|433590171|ref|YP_007279667.1| - 2.9e-06 26.9 0.0 4.1e-06 26.4 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) PrmA PF06325.8 gi|433590171|ref|YP_007279667.1| - 4.2e-06 26.0 0.2 5.8e-06 25.6 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) CMAS PF02353.15 gi|433590171|ref|YP_007279667.1| - 4.3e-06 26.0 0.0 5.4e-06 25.6 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase TPMT PF05724.6 gi|433590171|ref|YP_007279667.1| - 0.0035 16.8 0.0 0.0051 16.2 0.0 1.2 1 0 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) TehB PF03848.9 gi|433590171|ref|YP_007279667.1| - 0.013 14.6 0.0 0.017 14.3 0.0 1.2 1 0 0 1 1 1 0 Tellurite resistance protein TehB Met_10 PF02475.11 gi|433590171|ref|YP_007279667.1| - 0.017 14.7 0.0 0.023 14.2 0.0 1.1 1 0 0 1 1 1 0 Met-10+ like-protein Methyltransf_15 PF09445.5 gi|433590171|ref|YP_007279667.1| - 0.021 14.3 0.0 0.024 14.1 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase MetW PF07021.7 gi|433590171|ref|YP_007279667.1| - 0.033 13.5 0.0 0.052 12.9 0.0 1.3 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW Methyltransf_9 PF08003.6 gi|433590171|ref|YP_007279667.1| - 0.04 12.6 0.0 0.053 12.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) N6_N4_Mtase PF01555.13 gi|433590171|ref|YP_007279667.1| - 0.045 13.2 0.0 0.061 12.8 0.0 1.2 1 0 0 1 1 1 0 DNA methylase RrnaAD PF00398.15 gi|433590171|ref|YP_007279667.1| - 0.061 12.3 0.0 0.085 11.8 0.0 1.1 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase HAD_2 PF13419.1 gi|433590172|ref|YP_007279668.1| - 2.3e-29 102.8 0.7 2.8e-29 102.5 0.5 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|433590172|ref|YP_007279668.1| - 0.004 16.8 0.1 0.012 15.3 0.1 1.8 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.2 gi|433590172|ref|YP_007279668.1| - 0.044 13.9 0.0 0.053 13.6 0.0 1.2 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|433590172|ref|YP_007279668.1| - 0.091 13.1 0.2 0.16 12.3 0.1 1.5 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase Pyr_redox_2 PF07992.9 gi|433590173|ref|YP_007279669.1| - 3.6e-29 102.0 12.6 1.2e-14 54.6 0.1 4.9 3 1 1 4 4 4 3 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|433590173|ref|YP_007279669.1| - 9.3e-22 77.2 3.8 8.2e-19 67.8 0.3 3.4 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|433590173|ref|YP_007279669.1| - 3.2e-10 40.4 0.2 0.0011 19.1 0.0 3.5 2 1 1 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|433590173|ref|YP_007279669.1| - 2.6e-09 36.9 4.6 0.0007 19.5 0.0 3.5 3 0 0 3 3 3 2 NAD(P)-binding Rossmann-like domain DAO PF01266.19 gi|433590173|ref|YP_007279669.1| - 3.4e-09 36.0 15.8 0.0017 17.2 2.0 4.3 3 1 1 4 4 4 3 FAD dependent oxidoreductase Pyr_redox_dim PF02852.17 gi|433590173|ref|YP_007279669.1| - 2e-07 30.9 0.0 4.3e-07 29.9 0.0 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 3HCDH_N PF02737.13 gi|433590173|ref|YP_007279669.1| - 2.7e-05 23.8 0.2 2.7e-05 23.8 0.2 2.2 3 0 0 3 3 3 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TrkA_N PF02254.13 gi|433590173|ref|YP_007279669.1| - 7.2e-05 22.7 1.1 0.019 14.9 0.3 3.6 3 0 0 3 3 3 1 TrkA-N domain HI0933_like PF03486.9 gi|433590173|ref|YP_007279669.1| - 0.00012 20.7 2.5 0.17 10.2 0.0 3.7 3 1 1 4 4 4 2 HI0933-like protein NAD_binding_2 PF03446.10 gi|433590173|ref|YP_007279669.1| - 0.00036 20.4 0.2 0.0019 18.0 0.0 2.3 3 0 0 3 3 3 1 NAD binding domain of 6-phosphogluconate dehydrogenase UDPG_MGDP_dh_N PF03721.9 gi|433590173|ref|YP_007279669.1| - 0.0017 17.7 0.1 0.0064 15.8 0.0 1.9 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_10 PF13460.1 gi|433590173|ref|YP_007279669.1| - 0.0038 17.2 1.0 0.03 14.3 0.2 2.4 2 0 0 2 2 2 1 NADH(P)-binding NAD_binding_7 PF13241.1 gi|433590173|ref|YP_007279669.1| - 0.0066 16.6 1.1 0.27 11.4 0.1 2.9 3 0 0 3 3 3 1 Putative NAD(P)-binding NAD_Gly3P_dh_N PF01210.18 gi|433590173|ref|YP_007279669.1| - 0.0085 15.8 0.0 0.021 14.5 0.0 1.7 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Lycopene_cycl PF05834.7 gi|433590173|ref|YP_007279669.1| - 0.011 14.6 0.8 1.8 7.3 0.0 3.1 2 1 1 3 3 3 0 Lycopene cyclase protein 2-Hacid_dh_C PF02826.14 gi|433590173|ref|YP_007279669.1| - 0.059 12.5 0.1 0.16 11.1 0.0 1.7 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GIDA PF01134.17 gi|433590173|ref|YP_007279669.1| - 0.074 11.8 0.2 0.074 11.8 0.2 2.8 3 1 0 3 3 3 0 Glucose inhibited division protein A ApbA PF02558.11 gi|433590173|ref|YP_007279669.1| - 0.087 12.2 0.1 0.31 10.4 0.0 2.0 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA FAD_oxidored PF12831.2 gi|433590173|ref|YP_007279669.1| - 1.7 7.6 12.7 0.58 9.1 0.0 3.6 3 1 1 4 4 4 0 FAD dependent oxidoreductase HxlR PF01638.12 gi|433590174|ref|YP_007279670.1| - 3.1e-27 94.0 0.0 4e-27 93.6 0.0 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix PadR PF03551.9 gi|433590174|ref|YP_007279670.1| - 0.00033 20.3 0.0 0.0005 19.7 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family Pyr_redox_2 PF07992.9 gi|433590175|ref|YP_007279671.1| - 2.9e-23 82.8 0.0 3.6e-23 82.5 0.0 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|433590175|ref|YP_007279671.1| - 5.1e-12 45.3 1.1 9.2e-07 28.0 0.2 2.4 2 1 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_3 PF13738.1 gi|433590175|ref|YP_007279671.1| - 9.5e-11 42.1 0.1 5.1e-06 26.6 0.0 2.2 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|433590175|ref|YP_007279671.1| - 9e-08 31.3 6.2 1.8e-05 23.7 0.9 2.6 2 1 1 3 3 3 2 FAD binding domain Pyr_redox PF00070.22 gi|433590175|ref|YP_007279671.1| - 3.7e-07 30.4 0.2 0.0082 16.5 0.2 2.4 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|433590175|ref|YP_007279671.1| - 6e-07 28.2 0.4 0.00016 20.3 0.5 2.1 2 0 0 2 2 2 2 HI0933-like protein NAD_binding_8 PF13450.1 gi|433590175|ref|YP_007279671.1| - 8.8e-06 25.6 0.2 2.2e-05 24.4 0.2 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_oxidored PF12831.2 gi|433590175|ref|YP_007279671.1| - 1.2e-05 24.5 0.4 2e-05 23.8 0.3 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase GIDA PF01134.17 gi|433590175|ref|YP_007279671.1| - 2.7e-05 23.2 0.6 5.3e-05 22.2 0.1 1.7 2 0 0 2 2 2 1 Glucose inhibited division protein A K_oxygenase PF13434.1 gi|433590175|ref|YP_007279671.1| - 2.9e-05 23.1 0.0 0.00052 19.0 0.0 2.0 2 0 0 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) NAD_binding_9 PF13454.1 gi|433590175|ref|YP_007279671.1| - 0.00019 21.2 0.8 0.32 10.7 0.0 3.0 3 0 0 3 3 3 2 FAD-NAD(P)-binding Thi4 PF01946.12 gi|433590175|ref|YP_007279671.1| - 0.00058 19.0 0.1 0.0012 17.9 0.0 1.5 1 0 0 1 1 1 1 Thi4 family FAD_binding_3 PF01494.14 gi|433590175|ref|YP_007279671.1| - 0.0013 17.8 0.2 0.0021 17.2 0.1 1.2 1 0 0 1 1 1 1 FAD binding domain UDPG_MGDP_dh_N PF03721.9 gi|433590175|ref|YP_007279671.1| - 0.08 12.3 0.0 0.12 11.6 0.0 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Trp_halogenase PF04820.9 gi|433590175|ref|YP_007279671.1| - 0.25 9.9 0.9 0.84 8.1 0.2 1.9 2 0 0 2 2 2 0 Tryptophan halogenase 3HCDH_N PF02737.13 gi|433590175|ref|YP_007279671.1| - 0.66 9.6 2.4 0.52 9.9 0.2 1.9 3 0 0 3 3 3 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Glyoxalase_2 PF12681.2 gi|433590176|ref|YP_007279672.1| - 5.4e-17 62.3 0.0 8.7e-17 61.6 0.0 1.4 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase PF00903.20 gi|433590176|ref|YP_007279672.1| - 1.1e-15 57.7 0.0 1.5e-15 57.3 0.0 1.2 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.1 gi|433590176|ref|YP_007279672.1| - 9e-12 44.9 0.0 1.3e-11 44.4 0.0 1.3 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.1 gi|433590176|ref|YP_007279672.1| - 7.6e-07 29.1 0.1 2e-06 27.8 0.1 1.8 1 1 0 1 1 1 1 Glyoxalase-like domain DZR PF12773.2 gi|433590177|ref|YP_007279673.1| - 0.0043 16.8 1.5 0.0065 16.2 1.1 1.4 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|433590177|ref|YP_007279673.1| - 0.0065 15.6 0.5 0.011 14.9 0.3 1.4 1 0 0 1 1 1 1 zinc-ribbon domain zf-C2HC5 PF06221.8 gi|433590177|ref|YP_007279673.1| - 0.027 14.2 2.0 0.039 13.7 1.4 1.2 1 0 0 1 1 1 0 Putative zinc finger motif, C2HC5-type Ribosomal_L32p PF01783.18 gi|433590177|ref|YP_007279673.1| - 0.16 12.2 0.1 0.16 12.2 0.1 1.6 2 0 0 2 2 2 0 Ribosomal L32p protein family DUF2116 PF09889.4 gi|433590177|ref|YP_007279673.1| - 0.16 11.7 2.5 0.25 11.1 1.8 1.3 1 0 0 1 1 1 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) Zn-ribbon_8 PF09723.5 gi|433590177|ref|YP_007279673.1| - 0.32 10.9 3.8 0.92 9.5 2.6 1.8 1 1 0 1 1 1 0 Zinc ribbon domain zf-NADH-PPase PF09297.6 gi|433590177|ref|YP_007279673.1| - 0.33 10.5 3.1 9.1 5.8 0.2 2.4 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain OrfB_Zn_ribbon PF07282.6 gi|433590177|ref|YP_007279673.1| - 0.37 10.4 2.4 1.7 8.3 0.0 2.2 1 1 1 2 2 2 0 Putative transposase DNA-binding domain zf-C2H2_3 PF13878.1 gi|433590177|ref|YP_007279673.1| - 0.38 10.3 4.1 0.38 10.3 0.1 2.2 1 1 1 2 2 2 0 zinc-finger of acetyl-transferase ESCO OMPdecase PF00215.19 gi|433590178|ref|YP_007279674.1| - 9.8e-34 116.7 0.0 1.1e-33 116.5 0.0 1.0 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family DUF2859 PF11072.3 gi|433590178|ref|YP_007279674.1| - 0.043 13.2 0.0 0.12 11.8 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2859) Lipase_chap PF03280.9 gi|433590179|ref|YP_007279675.1| - 0.0026 17.2 0.5 0.003 17.1 0.4 1.0 1 0 0 1 1 1 1 Proteobacterial lipase chaperone protein DUF217 PF02697.9 gi|433590179|ref|YP_007279675.1| - 0.093 12.9 0.2 0.14 12.4 0.1 1.3 1 1 0 1 1 1 0 Uncharacterized ACR, COG1753 RHH_1 PF01402.16 gi|433590179|ref|YP_007279675.1| - 0.21 11.5 1.1 0.36 10.7 0.1 1.9 2 0 0 2 2 2 0 Ribbon-helix-helix protein, copG family PIN PF01850.16 gi|433590180|ref|YP_007279676.1| - 2.4e-13 50.4 0.0 3.1e-13 50.1 0.0 1.1 1 0 0 1 1 1 1 PIN domain MtaB PF12176.3 gi|433590180|ref|YP_007279676.1| - 0.0077 14.7 0.0 0.0096 14.3 0.0 1.0 1 0 0 1 1 1 1 Methanol-cobalamin methyltransferase B subunit zf-B_box PF00643.19 gi|433590182|ref|YP_007279678.1| - 0.00026 20.7 6.5 0.00091 19.0 1.3 2.1 2 0 0 2 2 2 1 B-box zinc finger zf-HIT PF04438.11 gi|433590182|ref|YP_007279678.1| - 0.0025 17.4 2.6 0.0025 17.4 1.8 1.9 2 0 0 2 2 2 1 HIT zinc finger zf-C3HC4_2 PF13923.1 gi|433590182|ref|YP_007279678.1| - 0.0048 16.9 4.9 0.035 14.1 3.4 1.9 1 1 0 1 1 1 1 Zinc finger, C3HC4 type (RING finger) TerY-C PF15616.1 gi|433590182|ref|YP_007279678.1| - 0.037 13.9 5.6 0.04 13.8 3.9 1.0 1 0 0 1 1 1 0 TerY-C metal binding domain zf-C3HC4_3 PF13920.1 gi|433590182|ref|YP_007279678.1| - 0.22 11.2 9.0 2.3 7.9 6.2 2.0 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) DUF3795 PF12675.2 gi|433590182|ref|YP_007279678.1| - 0.26 11.4 7.5 0.29 11.3 5.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3795) HypA PF01155.14 gi|433590182|ref|YP_007279678.1| - 0.34 10.6 3.9 0.37 10.4 2.7 1.2 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family DZR PF12773.2 gi|433590182|ref|YP_007279678.1| - 0.58 10.0 10.5 3.9 7.3 0.3 2.1 1 1 1 2 2 2 0 Double zinc ribbon zf-C2HC5 PF06221.8 gi|433590182|ref|YP_007279678.1| - 0.58 9.9 8.0 1.6 8.5 5.6 1.7 1 1 1 2 2 2 0 Putative zinc finger motif, C2HC5-type Prok-RING_2 PF14445.1 gi|433590182|ref|YP_007279678.1| - 0.9 9.5 5.7 1.1 9.2 3.9 1.1 1 0 0 1 1 1 0 Prokaryotic RING finger family 2 zf-MYND PF01753.13 gi|433590182|ref|YP_007279678.1| - 1.1 9.1 7.1 12 5.8 4.9 2.0 1 1 0 1 1 1 0 MYND finger PolC_DP2 PF03833.8 gi|433590182|ref|YP_007279678.1| - 1.4 6.5 3.8 1.3 6.5 2.6 1.0 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 zf-RING_5 PF14634.1 gi|433590182|ref|YP_007279678.1| - 3.9 7.2 8.2 11 5.8 5.7 1.9 1 1 0 1 1 1 0 zinc-RING finger domain FYVE PF01363.16 gi|433590182|ref|YP_007279678.1| - 6.3 6.7 9.1 25 4.8 6.3 2.0 1 1 0 1 1 1 0 FYVE zinc finger GTP_EFTU PF00009.22 gi|433590183|ref|YP_007279679.1| - 3.7e-35 121.0 0.0 5.4e-35 120.5 0.0 1.2 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.12 gi|433590183|ref|YP_007279679.1| - 8.2e-16 57.9 0.0 2.6e-15 56.3 0.0 1.9 2 0 0 2 2 2 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.20 gi|433590183|ref|YP_007279679.1| - 1.4e-10 41.1 0.6 1.4e-10 41.1 0.4 2.4 3 0 0 3 3 3 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|433590183|ref|YP_007279679.1| - 0.002 18.0 0.0 0.0039 17.1 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU_D4 PF14578.1 gi|433590183|ref|YP_007279679.1| - 0.0042 16.7 0.7 0.013 15.0 0.5 1.8 1 0 0 1 1 1 1 Elongation factor Tu domain 4 Polysacc_deac_1 PF01522.16 gi|433590183|ref|YP_007279679.1| - 0.051 13.2 0.0 0.092 12.3 0.0 1.4 1 0 0 1 1 1 0 Polysaccharide deacetylase ATP_bind_1 PF03029.12 gi|433590183|ref|YP_007279679.1| - 0.066 12.7 1.2 0.26 10.7 0.0 2.0 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein UPF0016 PF01169.14 gi|433590184|ref|YP_007279680.1| - 3e-26 91.3 17.1 4.6e-17 61.9 1.4 2.3 2 0 0 2 2 2 2 Uncharacterized protein family UPF0016 P5CR_dimer PF14748.1 gi|433590185|ref|YP_007279681.1| - 4.1e-36 123.2 2.1 4.1e-36 123.2 1.4 1.6 2 0 0 2 2 2 1 Pyrroline-5-carboxylate reductase dimerisation F420_oxidored PF03807.12 gi|433590185|ref|YP_007279681.1| - 2.9e-19 69.3 0.9 1.5e-18 66.9 0.0 2.5 2 1 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.10 gi|433590185|ref|YP_007279681.1| - 3.5e-08 33.4 0.0 8.8e-08 32.1 0.0 1.7 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_Gly3P_dh_N PF01210.18 gi|433590185|ref|YP_007279681.1| - 9e-07 28.7 0.5 4.8e-05 23.1 0.4 2.4 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus PDH PF02153.12 gi|433590185|ref|YP_007279681.1| - 3e-05 23.0 0.1 0.0033 16.3 0.1 2.1 2 0 0 2 2 2 1 Prephenate dehydrogenase OCD_Mu_crystall PF02423.10 gi|433590185|ref|YP_007279681.1| - 4e-05 22.5 1.4 6.2e-05 21.9 0.9 1.3 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family TrkA_N PF02254.13 gi|433590185|ref|YP_007279681.1| - 4.8e-05 23.3 1.0 0.00011 22.1 0.1 2.1 2 1 0 2 2 1 1 TrkA-N domain IlvN PF07991.7 gi|433590185|ref|YP_007279681.1| - 8.2e-05 22.0 0.1 0.00014 21.2 0.1 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain GFO_IDH_MocA PF01408.17 gi|433590185|ref|YP_007279681.1| - 0.00011 22.7 1.7 0.0017 18.8 0.0 2.6 2 1 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold 3HCDH_N PF02737.13 gi|433590185|ref|YP_007279681.1| - 0.0012 18.4 0.0 0.0033 17.1 0.0 1.8 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_10 PF13460.1 gi|433590185|ref|YP_007279681.1| - 0.0015 18.6 2.1 0.0015 18.5 0.4 1.9 2 0 0 2 2 2 1 NADH(P)-binding ApbA PF02558.11 gi|433590185|ref|YP_007279681.1| - 0.0017 17.7 0.4 0.0073 15.7 0.3 2.0 1 1 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Shikimate_DH PF01488.15 gi|433590185|ref|YP_007279681.1| - 0.0042 17.1 0.1 0.011 15.8 0.0 1.7 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase ThiF PF00899.16 gi|433590185|ref|YP_007279681.1| - 0.0052 16.5 1.1 0.017 14.9 0.2 2.2 1 1 1 2 2 2 1 ThiF family 2-Hacid_dh_C PF02826.14 gi|433590185|ref|YP_007279681.1| - 0.0081 15.3 0.0 0.014 14.5 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Rossmann-like PF10727.4 gi|433590185|ref|YP_007279681.1| - 0.029 14.0 0.6 0.029 14.0 0.4 2.0 3 0 0 3 3 3 0 Rossmann-like domain DapB_N PF01113.15 gi|433590185|ref|YP_007279681.1| - 0.032 14.1 0.4 0.084 12.7 0.3 1.7 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus Saccharop_dh PF03435.13 gi|433590185|ref|YP_007279681.1| - 0.036 13.0 0.1 0.055 12.4 0.0 1.2 1 0 0 1 1 1 0 Saccharopine dehydrogenase Methyltransf_25 PF13649.1 gi|433590185|ref|YP_007279681.1| - 0.096 13.0 0.0 0.4 11.0 0.0 2.0 2 0 0 2 2 2 0 Methyltransferase domain NAD_binding_7 PF13241.1 gi|433590185|ref|YP_007279681.1| - 0.11 12.7 0.8 0.2 11.9 0.1 1.7 2 0 0 2 2 2 0 Putative NAD(P)-binding AA_kinase PF00696.23 gi|433590186|ref|YP_007279682.1| - 1.1e-39 136.4 1.4 1.3e-39 136.2 0.9 1.1 1 0 0 1 1 1 1 Amino acid kinase family A1_Propeptide PF07966.7 gi|433590186|ref|YP_007279682.1| - 0.22 11.3 0.5 0.54 10.1 0.4 1.7 1 0 0 1 1 1 0 A1 Propeptide Aldedh PF00171.17 gi|433590187|ref|YP_007279683.1| - 1.3e-24 86.3 0.8 1.1e-20 73.3 0.2 2.3 2 1 0 2 2 2 2 Aldehyde dehydrogenase family Pex26 PF07163.7 gi|433590187|ref|YP_007279683.1| - 0.018 13.9 0.4 0.018 13.9 0.3 1.5 2 0 0 2 2 2 0 Pex26 protein IstB_IS21 PF01695.12 gi|433590187|ref|YP_007279683.1| - 0.071 12.5 0.0 0.15 11.4 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein ARGLU PF15346.1 gi|433590187|ref|YP_007279683.1| - 0.14 11.9 3.2 0.26 11.0 2.3 1.4 1 0 0 1 1 1 0 Arginine and glutamate-rich 1 MCH PF02289.11 gi|433590189|ref|YP_007279685.1| - 4.4e-87 292.0 0.0 4.9e-87 291.8 0.0 1.0 1 0 0 1 1 1 1 Cyclohydrolase (MCH) DUF77 PF01910.12 gi|433590190|ref|YP_007279686.1| - 5.3e-23 80.5 1.1 6.1e-23 80.3 0.8 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF77 DUF4112 PF13430.1 gi|433590192|ref|YP_007279688.1| - 3.2e-30 104.1 0.8 3.8e-30 103.9 0.5 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4112) Methyltrn_RNA_3 PF02598.12 gi|433590193|ref|YP_007279689.1| - 1.8e-46 158.8 0.0 2.1e-46 158.5 0.0 1.1 1 0 0 1 1 1 1 Putative RNA methyltransferase TOBE PF03459.12 gi|433590193|ref|YP_007279689.1| - 0.043 13.9 0.2 0.1 12.6 0.1 1.6 1 0 0 1 1 1 0 TOBE domain Ribosomal_L3 PF00297.17 gi|433590194|ref|YP_007279690.1| - 2.2e-89 299.3 0.3 2.6e-89 299.1 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein L3 Ribosomal_L4 PF00573.17 gi|433590195|ref|YP_007279691.1| - 4.5e-44 150.1 0.3 5.2e-44 149.9 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein L4/L1 family Gag_p6 PF08705.6 gi|433590195|ref|YP_007279691.1| - 0.056 13.4 0.0 0.14 12.2 0.0 1.6 1 1 0 1 1 1 0 Gag protein p6 Ribosomal_L23 PF00276.15 gi|433590196|ref|YP_007279692.1| - 7.3e-20 70.7 0.4 9.2e-20 70.3 0.3 1.1 1 0 0 1 1 1 1 Ribosomal protein L23 DUF356 PF04009.7 gi|433590196|ref|YP_007279692.1| - 0.069 13.2 0.1 0.095 12.7 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF356) SRP19 PF01922.12 gi|433590196|ref|YP_007279692.1| - 0.089 13.3 0.3 0.11 13.1 0.2 1.1 1 0 0 1 1 1 0 SRP19 protein DUF2551 PF10826.3 gi|433590196|ref|YP_007279692.1| - 0.093 12.6 0.0 0.13 12.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2551) TFIIH_BTF_p62_N PF08567.6 gi|433590196|ref|YP_007279692.1| - 0.12 12.0 0.0 0.15 11.7 0.0 1.3 1 0 0 1 1 1 0 TFIIH p62 subunit, N-terminal domain Ribosomal_L2_C PF03947.13 gi|433590197|ref|YP_007279693.1| - 1e-46 157.9 0.6 1.5e-46 157.3 0.4 1.3 1 0 0 1 1 1 1 Ribosomal Proteins L2, C-terminal domain Ribosomal_L2 PF00181.18 gi|433590197|ref|YP_007279693.1| - 2.7e-17 62.4 0.0 6.7e-17 61.2 0.0 1.7 1 0 0 1 1 1 1 Ribosomal Proteins L2, RNA binding domain Ribosomal_S19 PF00203.16 gi|433590198|ref|YP_007279694.1| - 6.6e-28 96.1 0.0 9.5e-28 95.6 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein S19 Ribosomal_L22 PF00237.14 gi|433590199|ref|YP_007279695.1| - 1.2e-25 89.5 0.0 1.4e-25 89.2 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L22p/L17e KH_2 PF07650.12 gi|433590200|ref|YP_007279696.1| - 1.4e-16 59.7 0.0 3.6e-16 58.4 0.0 1.7 1 0 0 1 1 1 1 KH domain Ribosomal_S3_C PF00189.15 gi|433590200|ref|YP_007279696.1| - 2.2e-15 56.6 0.1 3.5e-15 55.9 0.1 1.3 1 0 0 1 1 1 1 Ribosomal protein S3, C-terminal domain KH_1 PF00013.24 gi|433590200|ref|YP_007279696.1| - 0.0061 16.1 3.4 0.0067 16.0 0.0 2.7 3 1 0 3 3 3 1 KH domain KH_3 PF13014.1 gi|433590200|ref|YP_007279696.1| - 0.024 14.2 0.4 0.11 12.2 0.3 2.1 1 0 0 1 1 1 0 KH domain KH_4 PF13083.1 gi|433590200|ref|YP_007279696.1| - 5.2 6.7 8.0 0.5 10.0 0.1 3.1 2 1 0 3 3 3 0 KH domain Ribosomal_L29 PF00831.18 gi|433590201|ref|YP_007279697.1| - 1.3e-16 60.0 0.1 1.5e-16 59.8 0.1 1.1 1 0 0 1 1 1 1 Ribosomal L29 protein Med9 PF07544.8 gi|433590201|ref|YP_007279697.1| - 0.046 13.4 0.1 0.085 12.6 0.1 1.4 1 0 0 1 1 1 0 RNA polymerase II transcription mediator complex subunit 9 UPF0086 PF01868.11 gi|433590202|ref|YP_007279698.1| - 5.7e-25 86.7 0.0 8.6e-25 86.2 0.0 1.3 1 1 0 1 1 1 1 Domain of unknown function UPF0086 Ribosomal_S17 PF00366.15 gi|433590203|ref|YP_007279699.1| - 4.8e-26 90.5 2.7 6.2e-26 90.2 1.9 1.1 1 0 0 1 1 1 1 Ribosomal protein S17 Pro_Al_protease PF02983.9 gi|433590203|ref|YP_007279699.1| - 0.042 13.8 0.5 0.1 12.6 0.4 1.6 1 0 0 1 1 1 0 Alpha-lytic protease prodomain Ribosomal_L14 PF00238.14 gi|433590204|ref|YP_007279700.1| - 1e-37 128.5 0.2 1.2e-37 128.3 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L14p/L23e TRAM PF01938.15 gi|433590204|ref|YP_007279700.1| - 0.073 12.8 0.3 0.13 12.0 0.1 1.6 2 0 0 2 2 2 0 TRAM domain KOW PF00467.24 gi|433590205|ref|YP_007279701.1| - 3.8e-06 26.3 0.2 8.3e-06 25.3 0.1 1.6 1 0 0 1 1 1 1 KOW motif Poly_export PF02563.11 gi|433590205|ref|YP_007279701.1| - 0.076 12.7 0.1 0.11 12.2 0.1 1.4 1 0 0 1 1 1 0 Polysaccharide biosynthesis/export protein Ribosomal_S4e PF00900.15 gi|433590206|ref|YP_007279702.1| - 1.7e-28 98.1 0.0 3e-28 97.3 0.0 1.4 1 0 0 1 1 1 1 Ribosomal family S4e RS4NT PF08071.7 gi|433590206|ref|YP_007279702.1| - 4.2e-12 45.6 0.2 7.2e-12 44.9 0.2 1.3 1 0 0 1 1 1 1 RS4NT (NUC023) domain S4 PF01479.20 gi|433590206|ref|YP_007279702.1| - 0.00083 18.7 0.0 0.0013 18.0 0.0 1.4 1 0 0 1 1 1 1 S4 domain S4_2 PF13275.1 gi|433590206|ref|YP_007279702.1| - 0.045 13.3 0.0 0.35 10.5 0.0 2.2 2 0 0 2 2 2 0 S4 domain Ribosomal_L5_C PF00673.16 gi|433590207|ref|YP_007279703.1| - 2.7e-23 81.4 0.0 4.3e-23 80.8 0.0 1.3 1 0 0 1 1 1 1 ribosomal L5P family C-terminus Ribosomal_L5 PF00281.14 gi|433590207|ref|YP_007279703.1| - 7.1e-16 57.7 0.0 1.4e-15 56.7 0.0 1.5 1 0 0 1 1 1 1 Ribosomal protein L5 Ribosomal_S14 PF00253.16 gi|433590208|ref|YP_007279704.1| - 1e-15 56.8 2.7 1.2e-15 56.6 1.8 1.1 1 0 0 1 1 1 1 Ribosomal protein S14p/S29e DUF4428 PF14471.1 gi|433590208|ref|YP_007279704.1| - 0.0044 16.7 0.2 0.0053 16.4 0.2 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4428) Ribosomal_S8 PF00410.14 gi|433590209|ref|YP_007279705.1| - 5.6e-23 81.1 0.0 7.7e-23 80.7 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein S8 Ribosomal_L6 PF00347.18 gi|433590210|ref|YP_007279706.1| - 9.4e-26 90.1 0.9 8.2e-13 48.6 0.1 2.1 2 0 0 2 2 2 2 Ribosomal protein L6 HSP20 PF00011.16 gi|433590210|ref|YP_007279706.1| - 0.2 11.5 6.5 0.6 10.0 0.1 3.4 2 2 2 4 4 4 0 Hsp20/alpha crystallin family Ribosomal_L32e PF01655.13 gi|433590211|ref|YP_007279707.1| - 1.7e-36 124.5 1.1 3.1e-36 123.7 0.8 1.4 1 0 0 1 1 1 1 Ribosomal protein L32 HHH_5 PF14520.1 gi|433590211|ref|YP_007279707.1| - 1.8e-13 50.4 8.7 2.1e-11 43.7 1.3 2.6 2 1 0 2 2 2 2 Helix-hairpin-helix domain HHH PF00633.18 gi|433590211|ref|YP_007279707.1| - 4.6e-07 29.1 0.8 0.0067 16.0 0.0 2.9 3 0 0 3 3 3 2 Helix-hairpin-helix motif DNA_pol_lambd_f PF10391.4 gi|433590211|ref|YP_007279707.1| - 2.4e-06 27.0 0.0 1.2e-05 24.6 0.0 2.1 2 0 0 2 2 2 1 Fingers domain of DNA polymerase lambda HHH_2 PF12826.2 gi|433590211|ref|YP_007279707.1| - 1.3e-05 25.0 0.4 2.5e-05 24.0 0.3 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix motif Cdd1 PF11731.3 gi|433590211|ref|YP_007279707.1| - 0.0003 20.6 0.0 0.0015 18.4 0.0 2.0 2 0 0 2 2 2 1 Pathogenicity locus Ribosomal_L19e PF01280.15 gi|433590212|ref|YP_007279708.1| - 2.1e-55 186.5 5.9 2.4e-55 186.3 4.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L19e SHOCT PF09851.4 gi|433590212|ref|YP_007279708.1| - 0.00089 18.6 0.9 0.00089 18.6 0.7 2.1 2 0 0 2 2 2 1 Short C-terminal domain Vps35 PF03635.12 gi|433590212|ref|YP_007279708.1| - 0.012 13.7 0.0 0.015 13.5 0.0 1.1 1 0 0 1 1 1 0 Vacuolar protein sorting-associated protein 35 DUF3253 PF11625.3 gi|433590212|ref|YP_007279708.1| - 0.03 14.1 1.2 0.43 10.5 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3253) SAND PF01342.16 gi|433590212|ref|YP_007279708.1| - 0.19 11.4 1.3 0.36 10.5 0.9 1.4 1 0 0 1 1 1 0 SAND domain Transformer PF06495.6 gi|433590212|ref|YP_007279708.1| - 1.4 8.8 7.8 1.7 8.4 5.4 1.1 1 0 0 1 1 1 0 Fruit fly transformer protein Ribosomal_L18p PF00861.17 gi|433590213|ref|YP_007279709.1| - 7.5e-37 126.1 0.0 9.1e-37 125.8 0.0 1.1 1 0 0 1 1 1 1 Ribosomal L18p/L5e family Ribosomal_S5 PF00333.15 gi|433590214|ref|YP_007279710.1| - 2.4e-27 94.4 0.5 4.7e-27 93.5 0.3 1.5 1 0 0 1 1 1 1 Ribosomal protein S5, N-terminal domain Ribosomal_S5_C PF03719.10 gi|433590214|ref|YP_007279710.1| - 3e-23 80.9 0.0 5.7e-23 79.9 0.0 1.4 1 0 0 1 1 1 1 Ribosomal protein S5, C-terminal domain Ribosomal_L30 PF00327.15 gi|433590215|ref|YP_007279711.1| - 7.2e-13 47.9 0.0 1.1e-12 47.3 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L30p/L7e Ribosomal_L18e PF00828.14 gi|433590216|ref|YP_007279712.1| - 4.9e-26 91.6 0.8 4.9e-26 91.6 0.6 1.7 1 1 1 2 2 2 1 Ribosomal protein L18e/L15 SecY PF00344.15 gi|433590217|ref|YP_007279713.1| - 1.8e-91 306.6 20.0 2.2e-91 306.3 13.8 1.1 1 0 0 1 1 1 1 SecY translocase Plug_translocon PF10559.4 gi|433590217|ref|YP_007279713.1| - 1.2e-10 40.7 6.2 3e-10 39.4 0.5 3.1 3 0 0 3 3 3 2 Plug domain of Sec61p COX4_pro PF03626.9 gi|433590218|ref|YP_007279714.1| - 3.7e-10 39.7 9.0 4.2e-10 39.5 6.3 1.0 1 0 0 1 1 1 1 Prokaryotic Cytochrome C oxidase subunit IV Herpes_US9 PF06072.6 gi|433590218|ref|YP_007279714.1| - 0.49 10.2 0.1 0.49 10.2 0.0 2.2 2 1 1 3 3 3 0 Alphaherpesvirus tegument protein US9 MARVEL PF01284.18 gi|433590218|ref|YP_007279714.1| - 0.62 9.8 4.8 0.17 11.6 0.3 1.6 1 1 1 2 2 2 0 Membrane-associating domain FA_desaturase PF00487.19 gi|433590218|ref|YP_007279714.1| - 0.81 9.0 2.9 1.2 8.4 2.0 1.3 1 1 0 1 1 1 0 Fatty acid desaturase TMEM238 PF15125.1 gi|433590218|ref|YP_007279714.1| - 2.3 8.2 4.7 2.2 8.2 0.7 2.0 1 1 1 2 2 2 0 TMEM238 protein family zf-CHCC PF10276.4 gi|433590220|ref|YP_007279716.1| - 0.0082 15.9 0.3 0.013 15.3 0.2 1.3 1 0 0 1 1 1 1 Zinc-finger domain zf-Di19 PF05605.7 gi|433590220|ref|YP_007279716.1| - 0.0087 16.1 0.7 0.013 15.5 0.5 1.3 1 0 0 1 1 1 1 Drought induced 19 protein (Di19), zinc-binding zf-C2HC_2 PF13913.1 gi|433590220|ref|YP_007279716.1| - 0.017 14.7 0.6 0.017 14.7 0.4 1.6 2 0 0 2 2 2 0 zinc-finger of a C2HC-type zinc_ribbon_2 PF13240.1 gi|433590220|ref|YP_007279716.1| - 0.025 14.0 0.3 0.04 13.3 0.2 1.4 1 0 0 1 1 1 0 zinc-ribbon domain zf-C2H2 PF00096.21 gi|433590220|ref|YP_007279716.1| - 0.03 14.6 0.3 0.065 13.5 0.2 1.6 1 0 0 1 1 1 0 Zinc finger, C2H2 type zf-ribbon_3 PF13248.1 gi|433590220|ref|YP_007279716.1| - 0.042 13.0 0.1 0.068 12.4 0.1 1.4 1 0 0 1 1 1 0 zinc-ribbon domain FYDLN_acid PF09538.5 gi|433590220|ref|YP_007279716.1| - 0.043 14.3 0.1 0.061 13.9 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (FYDLN_acid) Sgf11 PF08209.6 gi|433590220|ref|YP_007279716.1| - 0.076 12.3 0.1 0.11 11.7 0.1 1.2 1 0 0 1 1 1 0 Sgf11 (transcriptional regulation protein) DUF2256 PF10013.4 gi|433590220|ref|YP_007279716.1| - 0.083 12.6 0.1 0.13 12.0 0.1 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2256) zf-C2H2_4 PF13894.1 gi|433590220|ref|YP_007279716.1| - 0.14 12.5 0.3 0.29 11.5 0.2 1.5 1 0 0 1 1 1 0 C2H2-type zinc finger Rad50_zn_hook PF04423.9 gi|433590220|ref|YP_007279716.1| - 0.17 11.4 0.8 0.22 10.9 0.1 1.6 2 0 0 2 2 2 0 Rad50 zinc hook motif Peptidase_S8 PF00082.17 gi|433590221|ref|YP_007279717.1| - 6.7e-53 179.6 5.7 9.5e-53 179.1 4.0 1.2 1 0 0 1 1 1 1 Subtilase family Fer2 PF00111.22 gi|433590222|ref|YP_007279718.1| - 6.8e-08 32.1 0.8 1.7e-07 30.8 0.5 1.6 1 1 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_4 PF13510.1 gi|433590222|ref|YP_007279718.1| - 0.0023 17.6 0.1 0.0038 16.9 0.1 1.4 1 1 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain COX1 PF00115.15 gi|433590223|ref|YP_007279719.1| - 2.8e-135 451.4 69.7 2.8e-135 451.4 48.3 3.0 2 1 0 3 3 3 1 Cytochrome C and Quinol oxidase polypeptide I COX3 PF00510.13 gi|433590223|ref|YP_007279719.1| - 2.8e-24 85.9 20.9 2.8e-24 85.9 14.5 2.9 2 2 0 2 2 2 1 Cytochrome c oxidase subunit III COX2 PF00116.15 gi|433590224|ref|YP_007279720.1| - 1.2e-17 63.8 0.0 1.7e-16 60.1 0.0 2.6 1 1 0 1 1 1 1 Cytochrome C oxidase subunit II, periplasmic domain Cupredoxin_1 PF13473.1 gi|433590224|ref|YP_007279720.1| - 0.0027 17.5 0.0 0.16 11.9 0.0 2.5 2 1 0 2 2 2 1 Cupredoxin-like domain fn3 PF00041.16 gi|433590224|ref|YP_007279720.1| - 0.0035 17.4 0.1 0.0078 16.3 0.1 1.6 1 0 0 1 1 1 1 Fibronectin type III domain A2M_N PF01835.14 gi|433590224|ref|YP_007279720.1| - 0.14 12.3 0.4 0.37 11.0 0.1 1.8 2 0 0 2 2 2 0 MG2 domain ADK PF00406.17 gi|433590226|ref|YP_007279722.1| - 7.1e-45 152.5 0.0 8.7e-45 152.2 0.0 1.1 1 0 0 1 1 1 1 Adenylate kinase AAA_17 PF13207.1 gi|433590226|ref|YP_007279722.1| - 1.8e-08 35.2 1.1 3.8e-08 34.1 0.4 1.8 1 1 1 2 2 2 1 AAA domain ADK_lid PF05191.9 gi|433590226|ref|YP_007279722.1| - 5.3e-08 32.3 0.2 1.1e-07 31.4 0.2 1.5 1 0 0 1 1 1 1 Adenylate kinase, active site lid AAA_33 PF13671.1 gi|433590226|ref|YP_007279722.1| - 2.3e-07 30.7 0.0 1.3e-05 25.1 0.0 2.3 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|433590226|ref|YP_007279722.1| - 2.1e-06 28.0 0.8 6.5e-06 26.4 0.5 1.9 1 1 0 1 1 1 1 AAA domain Zeta_toxin PF06414.7 gi|433590226|ref|YP_007279722.1| - 0.0043 16.1 0.0 0.0098 15.0 0.0 1.5 1 1 0 1 1 1 1 Zeta toxin PduV-EutP PF10662.4 gi|433590226|ref|YP_007279722.1| - 0.013 14.9 0.0 0.022 14.2 0.0 1.3 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation MMR_HSR1 PF01926.18 gi|433590226|ref|YP_007279722.1| - 0.028 14.3 0.0 0.043 13.7 0.0 1.4 1 0 0 1 1 1 0 50S ribosome-binding GTPase RuvB_N PF05496.7 gi|433590226|ref|YP_007279722.1| - 0.04 12.9 0.0 0.072 12.1 0.0 1.3 1 0 0 1 1 1 0 Holliday junction DNA helicase ruvB N-terminus Thymidylate_kin PF02223.12 gi|433590226|ref|YP_007279722.1| - 0.12 11.7 1.1 38 3.5 0.0 3.0 3 0 0 3 3 3 0 Thymidylate kinase Guanylate_kin PF00625.16 gi|433590226|ref|YP_007279722.1| - 0.13 11.6 0.1 0.52 9.7 0.0 1.9 2 0 0 2 2 2 0 Guanylate kinase SKI PF01202.17 gi|433590226|ref|YP_007279722.1| - 0.17 11.7 0.4 0.59 9.9 0.3 1.9 1 1 0 1 1 1 0 Shikimate kinase DNA_Packaging PF11053.3 gi|433590227|ref|YP_007279723.1| - 0.046 13.3 0.3 0.09 12.3 0.2 1.4 1 0 0 1 1 1 0 Terminase DNA packaging enzyme DUF106 PF01956.11 gi|433590228|ref|YP_007279724.1| - 3.7e-37 127.4 0.7 5.5e-37 126.8 0.5 1.2 1 0 0 1 1 1 1 Integral membrane protein DUF106 Bap31 PF05529.7 gi|433590228|ref|YP_007279724.1| - 0.015 14.7 0.4 0.025 14.0 0.3 1.4 1 0 0 1 1 1 0 B-cell receptor-associated protein 31-like DUF2419 PF10343.4 gi|433590228|ref|YP_007279724.1| - 0.015 14.5 0.6 0.023 13.9 0.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2419) AAA_23 PF13476.1 gi|433590228|ref|YP_007279724.1| - 0.035 14.4 0.1 0.042 14.1 0.0 1.2 1 0 0 1 1 1 0 AAA domain OmpH PF03938.9 gi|433590228|ref|YP_007279724.1| - 0.037 13.9 7.0 0.067 13.1 4.8 1.3 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) DUF4199 PF13858.1 gi|433590228|ref|YP_007279724.1| - 0.049 13.5 2.9 1.3 8.9 2.0 2.3 1 1 0 1 1 1 0 Protein of unknown function (DUF4199) Mnd1 PF03962.10 gi|433590228|ref|YP_007279724.1| - 0.33 10.5 7.3 0.58 9.8 5.1 1.3 1 0 0 1 1 1 0 Mnd1 family DUF4175 PF13779.1 gi|433590228|ref|YP_007279724.1| - 0.71 7.4 9.7 1.1 6.9 6.7 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4175) 60KD_IMP PF02096.15 gi|433590228|ref|YP_007279724.1| - 1.8 8.1 9.8 26 4.4 6.8 2.2 1 1 0 1 1 1 0 60Kd inner membrane protein Casc1 PF12366.3 gi|433590228|ref|YP_007279724.1| - 1.9 7.9 5.2 3.7 6.9 3.6 1.4 1 0 0 1 1 1 0 Cancer susceptibility candidate 1 APG6 PF04111.7 gi|433590228|ref|YP_007279724.1| - 6.2 5.7 11.3 1.5 7.8 5.6 1.4 2 0 0 2 2 2 0 Autophagy protein Apg6 Cytidylate_kin2 PF13189.1 gi|433590229|ref|YP_007279725.1| - 2.8e-20 72.9 0.1 1e-18 67.8 0.1 2.0 1 1 0 1 1 1 1 Cytidylate kinase-like family AAA_18 PF13238.1 gi|433590229|ref|YP_007279725.1| - 5e-17 62.4 0.1 6.7e-17 61.9 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|433590229|ref|YP_007279725.1| - 3.8e-14 53.5 1.9 5.7e-14 52.9 1.1 1.4 1 1 0 1 1 1 1 AAA domain ADK PF00406.17 gi|433590229|ref|YP_007279725.1| - 8.8e-08 32.1 0.0 2.1e-07 30.9 0.0 1.6 1 1 1 2 2 2 1 Adenylate kinase AAA_33 PF13671.1 gi|433590229|ref|YP_007279725.1| - 3.9e-07 30.0 0.3 2.3e-05 24.3 0.2 2.3 1 1 0 1 1 1 1 AAA domain SKI PF01202.17 gi|433590229|ref|YP_007279725.1| - 0.0005 19.9 1.6 0.0037 17.1 1.1 2.0 1 1 0 1 1 1 1 Shikimate kinase AAA_19 PF13245.1 gi|433590229|ref|YP_007279725.1| - 0.002 17.8 0.0 0.0055 16.4 0.0 1.7 1 0 0 1 1 1 1 Part of AAA domain Thymidylate_kin PF02223.12 gi|433590229|ref|YP_007279725.1| - 0.002 17.5 0.1 1.5 8.1 0.1 2.3 2 1 0 2 2 2 2 Thymidylate kinase AAA_16 PF13191.1 gi|433590229|ref|YP_007279725.1| - 0.0022 18.0 0.5 0.0078 16.2 0.4 2.0 1 1 0 1 1 1 1 AAA ATPase domain AAA_28 PF13521.1 gi|433590229|ref|YP_007279725.1| - 0.0031 17.4 0.1 0.0083 16.0 0.1 1.9 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|433590229|ref|YP_007279725.1| - 0.004 17.2 0.0 0.011 15.8 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|433590229|ref|YP_007279725.1| - 0.0042 17.2 0.0 0.0072 16.5 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) KTI12 PF08433.5 gi|433590229|ref|YP_007279725.1| - 0.0051 16.0 0.0 0.0072 15.5 0.0 1.4 1 0 0 1 1 1 1 Chromatin associated protein KTI12 Zeta_toxin PF06414.7 gi|433590229|ref|YP_007279725.1| - 0.0056 15.8 0.1 0.023 13.7 0.0 1.9 2 0 0 2 2 2 1 Zeta toxin Cytidylate_kin PF02224.13 gi|433590229|ref|YP_007279725.1| - 0.036 13.4 0.5 0.053 12.9 0.3 1.2 1 0 0 1 1 1 0 Cytidylate kinase AAA_5 PF07728.9 gi|433590229|ref|YP_007279725.1| - 0.043 13.5 0.0 0.1 12.2 0.0 1.5 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) RNA_helicase PF00910.17 gi|433590229|ref|YP_007279725.1| - 0.047 13.8 0.0 0.077 13.1 0.0 1.4 1 0 0 1 1 1 0 RNA helicase AAA_10 PF12846.2 gi|433590229|ref|YP_007279725.1| - 0.057 12.8 0.0 0.13 11.7 0.0 1.5 1 0 0 1 1 1 0 AAA-like domain AAA_30 PF13604.1 gi|433590229|ref|YP_007279725.1| - 0.079 12.5 0.3 0.44 10.0 0.0 2.2 2 1 1 3 3 3 0 AAA domain AAA_25 PF13481.1 gi|433590229|ref|YP_007279725.1| - 0.12 11.7 0.3 0.32 10.3 0.2 1.8 1 1 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|433590229|ref|YP_007279725.1| - 0.13 12.5 0.0 0.15 12.3 0.0 1.4 1 1 0 1 1 1 0 ABC transporter TruB_N PF01509.13 gi|433590230|ref|YP_007279726.1| - 1.5e-22 80.3 0.4 3.7e-13 49.8 0.0 3.2 1 1 1 2 2 2 2 TruB family pseudouridylate synthase (N terminal domain) PUA PF01472.15 gi|433590230|ref|YP_007279726.1| - 1.7e-09 37.2 0.6 3.2e-09 36.3 0.4 1.5 1 0 0 1 1 1 1 PUA domain DKCLD PF08068.7 gi|433590230|ref|YP_007279726.1| - 2.7e-09 36.7 0.1 5.2e-09 35.8 0.1 1.4 1 0 0 1 1 1 1 DKCLD (NUC011) domain DUF3701 PF12482.3 gi|433590230|ref|YP_007279726.1| - 0.00099 18.8 0.2 0.0043 16.7 0.0 2.0 2 0 0 2 2 2 1 Phage integrase protein Zn-ribbon_8 PF09723.5 gi|433590231|ref|YP_007279727.1| - 0.014 15.3 0.8 0.014 15.3 0.6 2.8 2 1 0 2 2 2 0 Zinc ribbon domain HypA PF01155.14 gi|433590231|ref|YP_007279727.1| - 0.019 14.6 6.6 0.73 9.5 2.8 2.2 1 1 1 2 2 2 0 Hydrogenase expression/synthesis hypA family DZR PF12773.2 gi|433590231|ref|YP_007279727.1| - 0.025 14.4 10.7 21 5.0 7.5 2.7 1 1 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|433590231|ref|YP_007279727.1| - 0.036 13.2 11.2 0.16 11.2 2.4 3.3 3 0 0 3 3 3 0 zinc-ribbon domain zf-C2HC_2 PF13913.1 gi|433590231|ref|YP_007279727.1| - 0.04 13.5 5.2 0.32 10.7 0.1 2.6 2 0 0 2 2 2 0 zinc-finger of a C2HC-type zf-CHY PF05495.7 gi|433590231|ref|YP_007279727.1| - 0.11 12.6 5.9 6.6 6.9 2.0 2.3 1 1 1 2 2 2 0 CHY zinc finger RRN7 PF11781.3 gi|433590231|ref|YP_007279727.1| - 0.17 11.3 6.1 6.4 6.3 0.1 3.2 3 0 0 3 3 3 0 RNA polymerase I-specific transcription initiation factor Rrn7 Zn_ribbon_recom PF13408.1 gi|433590231|ref|YP_007279727.1| - 0.3 11.3 4.4 2.7 8.3 0.2 2.5 2 1 0 2 2 2 0 Recombinase zinc beta ribbon domain Elf1 PF05129.8 gi|433590231|ref|YP_007279727.1| - 0.34 10.6 4.3 1.9 8.2 0.1 2.4 2 1 0 2 2 2 0 Transcription elongation factor Elf1 like DUF2318 PF10080.4 gi|433590231|ref|YP_007279727.1| - 0.35 10.6 4.2 2.7 7.8 0.3 2.4 1 1 1 2 2 2 0 Predicted membrane protein (DUF2318) LIM PF00412.17 gi|433590231|ref|YP_007279727.1| - 0.44 10.6 10.5 0.24 11.5 0.9 2.8 1 1 0 2 2 2 0 LIM domain zinc_ribbon_5 PF13719.1 gi|433590231|ref|YP_007279727.1| - 0.48 10.0 10.6 1.3 8.7 1.2 3.0 2 2 0 2 2 2 0 zinc-ribbon domain FYVE PF01363.16 gi|433590231|ref|YP_007279727.1| - 0.5 10.2 5.7 1.8 8.5 4.0 1.8 1 1 0 1 1 1 0 FYVE zinc finger FYDLN_acid PF09538.5 gi|433590231|ref|YP_007279727.1| - 0.73 10.4 0.1 0.73 10.4 0.1 2.0 2 1 0 2 2 2 0 Protein of unknown function (FYDLN_acid) DUF2757 PF10955.3 gi|433590231|ref|YP_007279727.1| - 0.88 9.8 4.6 3.3 7.9 0.2 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF2757) zf-RING_5 PF14634.1 gi|433590231|ref|YP_007279727.1| - 1.1 9.0 7.2 3.2 7.5 4.9 2.0 1 1 0 1 1 1 0 zinc-RING finger domain zinc_ribbon_4 PF13717.1 gi|433590231|ref|YP_007279727.1| - 1.4 8.7 11.0 1 9.0 0.8 3.0 2 2 0 2 2 2 0 zinc-ribbon domain DNA_RNApol_7kD PF03604.8 gi|433590231|ref|YP_007279727.1| - 2.5 7.6 8.3 47 3.5 2.9 3.2 2 1 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit Sgf11 PF08209.6 gi|433590231|ref|YP_007279727.1| - 3.8 6.9 15.0 1.2 8.5 0.5 3.4 3 1 0 3 3 3 0 Sgf11 (transcriptional regulation protein) DUF1272 PF06906.6 gi|433590231|ref|YP_007279727.1| - 3.9 7.4 10.3 1.5 8.6 4.1 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF1272) Zn-ribbon_8 PF09723.5 gi|433590232|ref|YP_007279728.1| - 0.19 11.7 0.2 0.19 11.7 0.1 1.5 2 0 0 2 2 2 0 Zinc ribbon domain DUF1628 PF07790.6 gi|433590233|ref|YP_007279729.1| - 2.1e-08 34.7 2.1 3.9e-08 33.9 1.5 1.7 1 1 0 1 1 1 1 Protein of unknown function (DUF1628) DUF4438 PF14505.1 gi|433590233|ref|YP_007279729.1| - 0.051 12.3 0.2 0.053 12.2 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4438) Rep_fac-A_3 PF08661.6 gi|433590233|ref|YP_007279729.1| - 0.23 11.3 2.1 1.9 8.4 0.1 2.1 1 1 1 2 2 2 0 Replication factor A protein 3 7kD_coat PF02495.12 gi|433590233|ref|YP_007279729.1| - 2 7.9 6.8 15 5.1 0.0 3.1 3 0 0 3 3 3 0 7kD viral coat protein DUF1628 PF07790.6 gi|433590234|ref|YP_007279730.1| - 1.4e-17 64.1 3.3 2.9e-17 63.1 2.3 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF1628) DUF1628 PF07790.6 gi|433590235|ref|YP_007279731.1| - 5.9e-05 23.7 0.5 0.0001 22.9 0.3 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF1628) Reprolysin_3 PF13582.1 gi|433590237|ref|YP_007279733.1| - 4.1e-05 24.0 0.5 0.00017 22.0 0.4 2.2 1 1 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Peptidase_M10 PF00413.19 gi|433590237|ref|YP_007279733.1| - 0.038 13.6 0.0 0.064 12.9 0.0 1.3 1 0 0 1 1 1 0 Matrixin Peptidase_M90 PF06167.7 gi|433590237|ref|YP_007279733.1| - 0.2 11.0 0.1 0.3 10.4 0.0 1.1 1 0 0 1 1 1 0 Glucose-regulated metallo-peptidase M90 DEAD_assoc PF08494.6 gi|433590238|ref|YP_007279734.1| - 8.6e-52 175.5 0.5 1.5e-51 174.7 0.3 1.4 1 0 0 1 1 1 1 DEAD/H associated DEAD PF00270.24 gi|433590238|ref|YP_007279734.1| - 8.9e-29 100.1 0.0 1.1e-27 96.5 0.0 2.2 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|433590238|ref|YP_007279734.1| - 9.7e-16 57.4 0.0 2.7e-14 52.8 0.0 2.5 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|433590238|ref|YP_007279734.1| - 1.5e-05 24.8 0.0 4.3e-05 23.4 0.0 1.8 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_22 PF13401.1 gi|433590238|ref|YP_007279734.1| - 0.0063 16.6 0.1 0.049 13.7 0.0 2.5 2 1 0 2 2 2 1 AAA domain Abhydrolase_6 PF12697.2 gi|433590239|ref|YP_007279735.1| - 4.9e-34 118.1 4.9 5.8e-34 117.9 3.4 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|433590239|ref|YP_007279735.1| - 6.5e-16 58.5 0.8 5.9e-14 52.1 0.5 2.1 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_5 PF12695.2 gi|433590239|ref|YP_007279735.1| - 7.5e-14 51.6 0.0 1.8e-13 50.4 0.0 1.6 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_4 PF08386.5 gi|433590239|ref|YP_007279735.1| - 0.022 14.6 0.0 0.043 13.7 0.0 1.5 1 0 0 1 1 1 0 TAP-like protein Ndr PF03096.9 gi|433590239|ref|YP_007279735.1| - 0.039 12.4 0.0 0.043 12.2 0.0 1.2 1 0 0 1 1 1 0 Ndr family HTH_24 PF13412.1 gi|433590240|ref|YP_007279736.1| - 3.3e-05 23.1 0.0 0.00012 21.3 0.0 2.0 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_32 PF13565.1 gi|433590240|ref|YP_007279736.1| - 0.0002 22.0 0.0 0.0016 19.1 0.0 2.2 2 0 0 2 2 2 1 Homeodomain-like domain HTH_Tnp_Tc3_2 PF01498.13 gi|433590240|ref|YP_007279736.1| - 0.00059 19.8 0.0 0.001 19.0 0.0 1.4 1 0 0 1 1 1 1 Transposase HTH_AsnC-type PF13404.1 gi|433590240|ref|YP_007279736.1| - 0.064 12.7 1.5 0.24 10.9 0.7 2.1 2 1 0 2 2 2 0 AsnC-type helix-turn-helix domain CAMSAP_CKK PF08683.6 gi|433590240|ref|YP_007279736.1| - 0.091 12.4 0.1 0.13 12.0 0.1 1.2 1 0 0 1 1 1 0 Microtubule-binding calmodulin-regulated spectrin-associated 4HBT PF03061.17 gi|433590241|ref|YP_007279737.1| - 1.2e-13 51.0 0.0 5.5e-13 48.8 0.1 1.9 2 0 0 2 2 2 1 Thioesterase superfamily DUF4442 PF14539.1 gi|433590241|ref|YP_007279737.1| - 2e-08 34.2 0.0 2.5e-08 33.9 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4442) 4HBT_3 PF13622.1 gi|433590241|ref|YP_007279737.1| - 0.0001 22.1 0.2 0.00013 21.8 0.1 1.1 1 0 0 1 1 1 1 Thioesterase-like superfamily 3HCDH_N PF02737.13 gi|433590242|ref|YP_007279738.1| - 4.6e-62 208.8 0.0 6.7e-62 208.3 0.0 1.2 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ECH PF00378.15 gi|433590242|ref|YP_007279738.1| - 2.2e-56 190.7 0.0 2.9e-56 190.3 0.0 1.2 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family 3HCDH PF00725.17 gi|433590242|ref|YP_007279738.1| - 5.1e-46 155.0 1.0 2.1e-21 76.0 0.0 3.5 3 0 0 3 3 3 2 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NAD_Gly3P_dh_N PF01210.18 gi|433590242|ref|YP_007279738.1| - 5.8e-06 26.1 0.0 9.8e-06 25.3 0.0 1.3 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus UDPG_MGDP_dh_N PF03721.9 gi|433590242|ref|YP_007279738.1| - 0.00023 20.6 0.0 0.00045 19.6 0.0 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ECH_C PF13766.1 gi|433590242|ref|YP_007279738.1| - 0.00027 21.0 0.0 0.00093 19.3 0.0 1.9 1 0 0 1 1 1 1 2-enoyl-CoA Hydratase C-terminal region NAD_binding_2 PF03446.10 gi|433590242|ref|YP_007279738.1| - 0.00027 20.8 0.1 0.00068 19.5 0.1 1.7 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.12 gi|433590242|ref|YP_007279738.1| - 0.00036 20.9 0.6 0.0029 17.9 0.4 2.4 1 1 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_3 PF03447.11 gi|433590242|ref|YP_007279738.1| - 0.017 15.4 0.1 0.041 14.2 0.0 1.6 1 0 0 1 1 1 0 Homoserine dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.16 gi|433590242|ref|YP_007279738.1| - 0.05 13.1 0.1 0.095 12.2 0.1 1.4 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_7 PF13241.1 gi|433590242|ref|YP_007279738.1| - 0.15 12.2 0.0 0.37 11.0 0.0 1.6 1 0 0 1 1 1 0 Putative NAD(P)-binding APH PF01636.18 gi|433590243|ref|YP_007279739.1| - 4.2e-44 151.0 9.2 5.9e-44 150.5 6.4 1.2 1 0 0 1 1 1 1 Phosphotransferase enzyme family EcKinase PF02958.15 gi|433590243|ref|YP_007279739.1| - 0.0005 19.3 0.0 0.00077 18.6 0.0 1.3 1 0 0 1 1 1 1 Ecdysteroid kinase HAD_2 PF13419.1 gi|433590244|ref|YP_007279740.1| - 3.5e-30 105.5 0.1 4.3e-30 105.2 0.1 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|433590244|ref|YP_007279740.1| - 3.6e-11 42.6 0.1 7.2e-11 41.6 0.0 1.5 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.21 gi|433590244|ref|YP_007279740.1| - 3.1e-09 37.5 0.1 4.3e-09 37.1 0.0 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|433590244|ref|YP_007279740.1| - 0.076 13.1 0.1 0.095 12.8 0.0 1.2 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase DUF3038 PF11237.3 gi|433590244|ref|YP_007279740.1| - 0.084 12.6 0.0 0.12 12.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3038) NT5C PF06941.7 gi|433590244|ref|YP_007279740.1| - 0.11 11.9 0.0 0.19 11.2 0.0 1.5 1 1 0 1 1 1 0 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) adh_short PF00106.20 gi|433590245|ref|YP_007279741.1| - 4.1e-38 130.9 0.5 5.7e-38 130.4 0.4 1.2 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|433590245|ref|YP_007279741.1| - 2.4e-26 92.9 0.0 2.9e-26 92.6 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|433590245|ref|YP_007279741.1| - 2.1e-14 53.6 0.2 3.1e-14 53.0 0.2 1.1 1 0 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|433590245|ref|YP_007279741.1| - 5.8e-06 25.9 0.3 2.8e-05 23.6 0.2 1.9 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.1 gi|433590245|ref|YP_007279741.1| - 0.0004 20.4 1.0 0.00076 19.5 0.7 1.7 1 1 0 1 1 1 1 NADH(P)-binding RmlD_sub_bind PF04321.12 gi|433590245|ref|YP_007279741.1| - 0.0075 15.1 0.1 0.015 14.2 0.1 1.5 1 1 0 1 1 1 1 RmlD substrate binding domain F420_oxidored PF03807.12 gi|433590245|ref|YP_007279741.1| - 0.013 15.9 0.1 0.023 15.1 0.0 1.4 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent 3Beta_HSD PF01073.14 gi|433590245|ref|YP_007279741.1| - 0.027 13.1 0.2 0.038 12.6 0.1 1.1 1 0 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family HHH_5 PF14520.1 gi|433590245|ref|YP_007279741.1| - 0.039 14.1 0.1 0.61 10.3 0.0 2.3 2 0 0 2 2 2 0 Helix-hairpin-helix domain 3HCDH_N PF02737.13 gi|433590245|ref|YP_007279741.1| - 0.056 13.1 0.0 0.11 12.1 0.0 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_2 PF03446.10 gi|433590245|ref|YP_007279741.1| - 0.069 12.9 0.0 0.13 12.1 0.0 1.4 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase THF_DHG_CYH_C PF02882.14 gi|433590245|ref|YP_007279741.1| - 0.077 12.0 0.1 0.3 10.1 0.0 1.9 2 0 0 2 2 2 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain TrkA_N PF02254.13 gi|433590245|ref|YP_007279741.1| - 0.078 12.9 0.2 0.14 12.1 0.1 1.4 1 0 0 1 1 1 0 TrkA-N domain Polysacc_synt_2 PF02719.10 gi|433590245|ref|YP_007279741.1| - 0.13 11.1 0.1 0.26 10.1 0.0 1.4 1 1 0 1 1 1 0 Polysaccharide biosynthesis protein Bac_luciferase PF00296.15 gi|433590246|ref|YP_007279742.1| - 4e-76 256.0 2.2 5e-76 255.7 1.5 1.1 1 0 0 1 1 1 1 Luciferase-like monooxygenase TPR_4 PF07721.9 gi|433590246|ref|YP_007279742.1| - 3.1 8.5 10.0 14 6.4 0.6 4.1 3 0 0 3 3 3 0 Tetratricopeptide repeat Abhydrolase_6 PF12697.2 gi|433590247|ref|YP_007279743.1| - 6.3e-29 101.4 8.7 7.2e-29 101.2 6.0 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|433590247|ref|YP_007279743.1| - 1.8e-17 63.4 0.0 2.7e-17 62.8 0.0 1.3 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|433590247|ref|YP_007279743.1| - 1.2e-06 28.2 0.0 6e-06 25.9 0.0 1.8 1 1 0 1 1 1 1 alpha/beta hydrolase fold Thioesterase PF00975.15 gi|433590247|ref|YP_007279743.1| - 0.00029 21.1 0.1 0.0005 20.3 0.1 1.4 1 0 0 1 1 1 1 Thioesterase domain Abhydrolase_4 PF08386.5 gi|433590247|ref|YP_007279743.1| - 0.00053 19.8 0.0 0.0018 18.1 0.0 1.9 2 0 0 2 2 2 1 TAP-like protein Abhydrolase_8 PF06259.7 gi|433590247|ref|YP_007279743.1| - 0.0028 17.1 0.0 0.005 16.3 0.0 1.4 1 0 0 1 1 1 1 Alpha/beta hydrolase DLH PF01738.13 gi|433590247|ref|YP_007279743.1| - 0.11 11.8 0.0 0.58 9.3 0.0 2.0 2 0 0 2 2 2 0 Dienelactone hydrolase family HTH_10 PF04967.7 gi|433590248|ref|YP_007279744.1| - 2e-20 72.1 0.3 4.8e-20 70.8 0.0 1.8 2 0 0 2 2 2 1 HTH DNA binding domain Sigma70_r4 PF04545.11 gi|433590248|ref|YP_007279744.1| - 8.8e-06 24.9 0.2 2.2e-05 23.6 0.1 1.7 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_AsnC-type PF13404.1 gi|433590248|ref|YP_007279744.1| - 0.0014 18.0 2.5 0.0024 17.3 0.7 2.2 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.1 gi|433590248|ref|YP_007279744.1| - 0.013 14.8 0.6 0.029 13.7 0.1 1.8 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding Sigma70_r4_2 PF08281.7 gi|433590248|ref|YP_007279744.1| - 0.024 14.0 0.5 0.3 10.5 0.3 2.4 1 1 0 1 1 1 0 Sigma-70, region 4 MarR_2 PF12802.2 gi|433590248|ref|YP_007279744.1| - 0.07 12.8 0.1 0.14 11.7 0.1 1.5 1 0 0 1 1 1 0 MarR family AIRS_C PF02769.17 gi|433590249|ref|YP_007279745.1| - 2.7e-23 82.6 2.0 4.7e-23 81.8 1.4 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|433590249|ref|YP_007279745.1| - 2.5e-08 34.0 1.2 7.8e-08 32.4 0.8 1.9 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain HTH_31 PF13560.1 gi|433590249|ref|YP_007279745.1| - 0.031 14.4 1.0 0.08 13.1 0.7 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain Ion_trans_2 PF07885.11 gi|433590250|ref|YP_007279746.1| - 1.6e-11 43.7 2.9 1.6e-11 43.7 2.0 2.6 2 0 0 2 2 2 1 Ion channel TrkA_N PF02254.13 gi|433590250|ref|YP_007279746.1| - 1.1e-10 41.4 1.0 2e-10 40.7 0.7 1.4 1 0 0 1 1 1 1 TrkA-N domain Shikimate_DH PF01488.15 gi|433590250|ref|YP_007279746.1| - 0.007 16.4 0.1 0.14 12.2 0.0 2.2 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase Ion_trans PF00520.26 gi|433590250|ref|YP_007279746.1| - 0.045 13.0 0.0 0.086 12.0 0.0 1.5 1 0 0 1 1 1 0 Ion transport protein DUF3262 PF11660.3 gi|433590250|ref|YP_007279746.1| - 0.09 12.8 1.6 0.93 9.6 0.1 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3262) DUF2784 PF10861.3 gi|433590250|ref|YP_007279746.1| - 0.71 9.6 5.1 0.19 11.5 0.8 2.1 1 1 1 2 2 2 0 Protein of Unknown function (DUF2784) PAP2 PF01569.16 gi|433590251|ref|YP_007279747.1| - 5.8e-21 74.5 6.3 5.8e-21 74.5 4.4 2.3 2 1 0 2 2 2 1 PAP2 superfamily PAP2_3 PF14378.1 gi|433590251|ref|YP_007279747.1| - 1.3e-05 24.8 1.6 1.3e-05 24.8 1.1 2.1 2 0 0 2 2 2 1 PAP2 superfamily PAP2_C PF14360.1 gi|433590251|ref|YP_007279747.1| - 0.14 12.4 0.6 0.89 9.8 0.0 2.3 2 0 0 2 2 2 0 PAP2 superfamily C-terminal HTH_10 PF04967.7 gi|433590252|ref|YP_007279748.1| - 3.2e-22 77.8 0.0 6e-22 76.9 0.0 1.5 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4 PF04545.11 gi|433590252|ref|YP_007279748.1| - 0.0001 21.5 0.0 0.00031 20.0 0.0 1.8 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4_2 PF08281.7 gi|433590252|ref|YP_007279748.1| - 0.00066 19.0 0.2 0.15 11.5 0.0 2.4 2 0 0 2 2 2 2 Sigma-70, region 4 GerE PF00196.14 gi|433590252|ref|YP_007279748.1| - 0.02 14.1 0.0 5.2 6.4 0.0 2.3 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family HTH_1 PF00126.22 gi|433590252|ref|YP_007279748.1| - 0.14 11.8 1.7 0.19 11.4 0.0 2.0 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family AAA_11 PF13086.1 gi|433590254|ref|YP_007279750.1| - 3.1e-40 138.2 0.9 8.5e-20 71.3 0.2 2.9 2 1 1 3 3 3 2 AAA domain AAA_12 PF13087.1 gi|433590254|ref|YP_007279750.1| - 1.7e-39 135.2 0.0 3.9e-39 134.1 0.0 1.6 2 0 0 2 2 2 1 AAA domain Dna2 PF08696.6 gi|433590254|ref|YP_007279750.1| - 2.2e-32 112.0 0.0 1.2e-31 109.6 0.0 2.0 1 1 0 1 1 1 1 DNA replication factor Dna2 PDDEXK_1 PF12705.2 gi|433590254|ref|YP_007279750.1| - 1.9e-17 63.5 1.4 4.9e-17 62.1 0.0 2.5 3 0 0 3 3 3 1 PD-(D/E)XK nuclease superfamily AAA_30 PF13604.1 gi|433590254|ref|YP_007279750.1| - 3e-16 59.5 3.1 2.5e-15 56.5 0.9 3.1 2 1 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|433590254|ref|YP_007279750.1| - 6.7e-16 57.8 0.5 7.2e-14 51.3 0.1 2.9 2 0 0 2 2 2 1 Part of AAA domain Viral_helicase1 PF01443.13 gi|433590254|ref|YP_007279750.1| - 3.6e-07 29.9 0.0 0.001 18.6 0.0 3.2 3 1 0 3 3 3 2 Viral (Superfamily 1) RNA helicase UvrD-helicase PF00580.16 gi|433590254|ref|YP_007279750.1| - 6.7e-06 25.6 0.0 1.4e-05 24.5 0.0 1.6 1 1 0 1 1 1 1 UvrD/REP helicase N-terminal domain Cas_Cas4 PF01930.12 gi|433590254|ref|YP_007279750.1| - 1.5e-05 24.9 0.1 0.00013 21.9 0.0 2.4 1 1 1 2 2 2 1 Domain of unknown function DUF83 AAA_16 PF13191.1 gi|433590254|ref|YP_007279750.1| - 1.5e-05 25.0 2.2 1.8e-05 24.8 0.3 2.1 2 1 0 2 2 1 1 AAA ATPase domain Helicase_RecD PF05127.9 gi|433590254|ref|YP_007279750.1| - 0.00021 20.9 0.7 0.0015 18.1 0.5 2.4 1 1 0 1 1 1 1 Helicase ResIII PF04851.10 gi|433590254|ref|YP_007279750.1| - 0.0014 18.5 0.0 0.003 17.4 0.0 1.6 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_22 PF13401.1 gi|433590254|ref|YP_007279750.1| - 0.0021 18.1 0.0 0.011 15.8 0.0 2.3 1 1 0 1 1 1 1 AAA domain PhoH PF02562.11 gi|433590254|ref|YP_007279750.1| - 0.0034 16.6 0.0 0.016 14.4 0.0 2.1 1 1 0 1 1 1 1 PhoH-like protein T2SE PF00437.15 gi|433590254|ref|YP_007279750.1| - 0.0059 15.5 0.0 0.012 14.5 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein IstB_IS21 PF01695.12 gi|433590254|ref|YP_007279750.1| - 0.0073 15.7 0.0 0.019 14.4 0.0 1.6 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA PF00004.24 gi|433590254|ref|YP_007279750.1| - 0.0092 16.1 0.2 0.033 14.3 0.1 1.9 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DUF4350 PF14258.1 gi|433590254|ref|YP_007279750.1| - 0.012 15.8 3.2 6.6 7.0 0.0 5.0 5 1 1 6 6 4 0 Domain of unknown function (DUF4350) UvrD_C_2 PF13538.1 gi|433590254|ref|YP_007279750.1| - 0.017 15.2 0.0 0.068 13.3 0.0 2.1 1 0 0 1 1 1 0 UvrD-like helicase C-terminal domain SRP54 PF00448.17 gi|433590254|ref|YP_007279750.1| - 0.019 14.4 0.0 0.069 12.5 0.0 1.8 1 1 0 1 1 1 0 SRP54-type protein, GTPase domain DUF2075 PF09848.4 gi|433590254|ref|YP_007279750.1| - 0.067 12.1 0.0 0.18 10.7 0.0 1.7 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) TrwB_AAD_bind PF10412.4 gi|433590254|ref|YP_007279750.1| - 0.071 11.7 0.0 0.12 10.9 0.0 1.3 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_10 PF12846.2 gi|433590254|ref|YP_007279750.1| - 0.12 11.7 0.1 0.75 9.1 0.1 2.4 1 1 0 1 1 1 0 AAA-like domain DEAD PF00270.24 gi|433590254|ref|YP_007279750.1| - 0.15 11.5 0.0 0.29 10.6 0.0 1.6 1 0 0 1 1 1 0 DEAD/DEAH box helicase Mg_chelatase PF01078.16 gi|433590254|ref|YP_007279750.1| - 0.16 11.1 0.0 0.28 10.3 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI PIF1 PF05970.9 gi|433590254|ref|YP_007279750.1| - 0.17 10.8 0.0 3.6 6.4 0.0 2.1 2 0 0 2 2 2 0 PIF1-like helicase AAA_25 PF13481.1 gi|433590254|ref|YP_007279750.1| - 0.17 11.2 2.5 0.2 11.0 0.0 2.5 3 0 0 3 3 2 0 AAA domain SPW PF03779.9 gi|433590255|ref|YP_007279751.1| - 1.9e-05 23.9 18.1 0.00051 19.3 4.3 2.3 2 0 0 2 2 2 2 SPW repeat NVEALA PF14055.1 gi|433590255|ref|YP_007279751.1| - 0.28 10.9 2.4 6.3 6.5 0.0 2.9 3 0 0 3 3 3 0 NVEALA protein HHH_2 PF12826.2 gi|433590257|ref|YP_007279753.1| - 0.0025 17.6 1.3 0.12 12.2 0.4 2.3 2 0 0 2 2 2 2 Helix-hairpin-helix motif PIN PF01850.16 gi|433590258|ref|YP_007279754.1| - 5.6e-13 49.2 0.3 7.6e-13 48.8 0.2 1.1 1 0 0 1 1 1 1 PIN domain ESX-1_EspG PF14011.1 gi|433590258|ref|YP_007279754.1| - 0.0045 16.2 0.8 0.0049 16.1 0.5 1.1 1 0 0 1 1 1 1 EspG family zf-HC2 PF13490.1 gi|433590258|ref|YP_007279754.1| - 0.17 11.8 0.9 5.1 7.1 0.4 2.9 2 1 0 2 2 2 0 Putative zinc-finger DUF217 PF02697.9 gi|433590259|ref|YP_007279755.1| - 7.2e-07 29.3 0.2 1.1e-06 28.8 0.1 1.3 1 0 0 1 1 1 1 Uncharacterized ACR, COG1753 RHH_1 PF01402.16 gi|433590259|ref|YP_007279755.1| - 0.27 11.2 3.2 1.1 9.2 0.2 2.3 2 0 0 2 2 2 0 Ribbon-helix-helix protein, copG family DUF3225 PF11533.3 gi|433590260|ref|YP_007279756.1| - 3.3e-05 23.5 0.1 4.7e-05 23.0 0.1 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF3225) SnoaL_3 PF13474.1 gi|433590260|ref|YP_007279756.1| - 8.2e-05 22.6 0.5 0.00011 22.2 0.3 1.2 1 0 0 1 1 1 1 SnoaL-like domain DUF2342 PF10103.4 gi|433590262|ref|YP_007279758.1| - 2e-80 270.3 2.5 1.6e-44 152.2 0.2 2.0 1 1 1 2 2 2 2 Uncharacterised conserved protein (DUF2342) Peptidase_MA_2 PF13485.1 gi|433590262|ref|YP_007279758.1| - 0.06 13.3 1.3 0.21 11.6 0.9 2.0 1 1 0 1 1 1 0 Peptidase MA superfamily LSM PF01423.17 gi|433590264|ref|YP_007279760.1| - 4.5e-18 64.5 0.0 5.2e-18 64.3 0.0 1.1 1 0 0 1 1 1 1 LSM domain SM-ATX PF14438.1 gi|433590264|ref|YP_007279760.1| - 2.6e-06 27.2 0.0 3.3e-06 26.9 0.0 1.2 1 0 0 1 1 1 1 Ataxin 2 SM domain PDZ_2 PF13180.1 gi|433590264|ref|YP_007279760.1| - 0.097 12.5 0.3 1.7 8.5 0.0 2.0 2 0 0 2 2 2 0 PDZ domain Ribosomal_L37e PF01907.14 gi|433590265|ref|YP_007279761.1| - 1.7e-24 85.3 15.6 1.9e-24 85.2 10.8 1.0 1 0 0 1 1 1 1 Ribosomal protein L37e DZR PF12773.2 gi|433590265|ref|YP_007279761.1| - 0.0053 16.5 3.8 0.0062 16.3 2.6 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-RanBP PF00641.13 gi|433590265|ref|YP_007279761.1| - 0.026 13.6 3.3 0.38 9.9 0.1 2.3 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others zf-ribbon_3 PF13248.1 gi|433590265|ref|YP_007279761.1| - 0.027 13.6 3.8 1 8.6 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain HypA PF01155.14 gi|433590265|ref|YP_007279761.1| - 0.07 12.8 2.7 0.08 12.6 1.9 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Zn_Tnp_IS91 PF14319.1 gi|433590265|ref|YP_007279761.1| - 0.14 11.6 2.8 0.16 11.4 2.0 1.1 1 0 0 1 1 1 0 Transposase zinc-binding domain DUF1258 PF06869.7 gi|433590265|ref|YP_007279761.1| - 0.22 10.5 2.0 0.25 10.4 1.4 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1258) zf-C3HC4 PF00097.20 gi|433590265|ref|YP_007279761.1| - 0.58 9.8 4.9 0.72 9.5 3.4 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) zinc_ribbon_2 PF13240.1 gi|433590265|ref|YP_007279761.1| - 0.59 9.7 6.7 1.6 8.2 0.3 2.2 1 1 1 2 2 2 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|433590265|ref|YP_007279761.1| - 0.87 9.2 8.3 1.5 8.5 5.7 1.5 1 1 1 2 2 2 0 Putative transposase DNA-binding domain RNA_POL_M_15KD PF02150.11 gi|433590265|ref|YP_007279761.1| - 1.1 9.0 6.2 4.2 7.1 0.5 2.2 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit UPF0547 PF10571.4 gi|433590265|ref|YP_007279761.1| - 1.6 8.5 6.0 5.8 6.7 0.2 2.9 3 0 0 3 3 3 0 Uncharacterised protein family UPF0547 zf-C2H2_3 PF13878.1 gi|433590265|ref|YP_007279761.1| - 3.6 7.2 10.3 7.5 6.2 1.4 2.2 1 1 1 2 2 2 0 zinc-finger of acetyl-transferase ESCO PALP PF00291.20 gi|433590266|ref|YP_007279762.1| - 1.9e-54 185.0 0.3 2.1e-54 184.8 0.2 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme DZR PF12773.2 gi|433590266|ref|YP_007279762.1| - 0.021 14.6 0.5 0.04 13.7 0.3 1.4 1 0 0 1 1 1 0 Double zinc ribbon HypA PF01155.14 gi|433590266|ref|YP_007279762.1| - 0.052 13.2 0.5 0.093 12.4 0.4 1.4 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family YhfH PF14149.1 gi|433590266|ref|YP_007279762.1| - 0.27 11.0 2.2 0.53 10.1 1.5 1.4 1 0 0 1 1 1 0 YhfH-like protein PcrB PF01884.12 gi|433590268|ref|YP_007279764.1| - 3.8e-45 153.9 0.3 4.3e-45 153.7 0.2 1.0 1 0 0 1 1 1 1 PcrB family HTH_10 PF04967.7 gi|433590269|ref|YP_007279765.1| - 8.1e-18 63.7 0.1 1.6e-17 62.7 0.1 1.5 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4 PF04545.11 gi|433590269|ref|YP_007279765.1| - 7.1e-05 22.0 0.7 0.00016 20.8 0.5 1.7 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4_2 PF08281.7 gi|433590269|ref|YP_007279765.1| - 0.0039 16.6 0.3 0.14 11.6 0.1 2.6 2 0 0 2 2 2 1 Sigma-70, region 4 UPF0122 PF04297.9 gi|433590269|ref|YP_007279765.1| - 0.032 14.2 0.0 0.054 13.5 0.0 1.3 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like HTH_AsnC-type PF13404.1 gi|433590269|ref|YP_007279765.1| - 0.054 13.0 0.2 0.054 13.0 0.2 2.1 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain HTH_24 PF13412.1 gi|433590269|ref|YP_007279765.1| - 0.068 12.5 0.1 0.14 11.5 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding GerE PF00196.14 gi|433590269|ref|YP_007279765.1| - 0.073 12.3 0.1 0.9 8.9 0.0 2.2 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family SIR2 PF02146.12 gi|433590270|ref|YP_007279766.1| - 3.8e-37 127.7 0.0 4.6e-19 68.8 0.0 2.1 2 0 0 2 2 2 2 Sir2 family tRNA-synt_2 PF00152.15 gi|433590271|ref|YP_007279767.1| - 1.5e-88 296.7 0.0 1.9e-88 296.4 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.20 gi|433590271|ref|YP_007279767.1| - 6.6e-15 54.7 0.2 1.2e-14 53.9 0.1 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.15 gi|433590271|ref|YP_007279767.1| - 0.00069 18.8 0.1 0.097 11.8 0.0 2.4 2 0 0 2 2 2 2 tRNA synthetases class II core domain (F) GHMP_kinases_N PF00288.21 gi|433590272|ref|YP_007279768.1| - 2.1e-11 43.7 1.7 4.6e-11 42.6 1.2 1.6 1 0 0 1 1 1 1 GHMP kinases N terminal domain DUF1508 PF07411.7 gi|433590273|ref|YP_007279769.1| - 7.1e-34 115.0 0.0 0.002 17.5 0.0 12.1 14 0 0 14 14 14 7 Domain of unknown function (DUF1508) DDE_Tnp_IS240 PF13610.1 gi|433590273|ref|YP_007279769.1| - 3.2e-09 36.8 5.9 0.46 10.4 0.0 8.0 7 1 1 8 8 8 1 DDE domain MalF_P2 PF14785.1 gi|433590273|ref|YP_007279769.1| - 6.6e-05 22.8 0.0 9.8 6.0 0.0 5.5 4 2 1 5 5 5 1 Maltose transport system permease protein MalF P2 domain FtsQ PF03799.10 gi|433590273|ref|YP_007279769.1| - 0.00055 20.1 0.4 0.29 11.3 0.1 4.4 3 1 0 3 3 3 1 Cell division protein FtsQ CelD_N PF02927.9 gi|433590273|ref|YP_007279769.1| - 0.0017 18.5 7.2 0.88 9.8 0.1 6.9 7 2 1 8 8 8 1 N-terminal ig-like domain of cellulase SPOR PF05036.8 gi|433590273|ref|YP_007279769.1| - 0.012 15.7 4.3 7.5 6.8 0.0 4.8 7 0 0 7 7 7 0 Sporulation related domain DUF2914 PF11141.3 gi|433590273|ref|YP_007279769.1| - 0.13 11.8 9.9 0.39 10.2 0.0 5.0 6 0 0 6 6 6 0 Protein of unknown function (DUF2914) HlyIII PF03006.15 gi|433590273|ref|YP_007279769.1| - 0.35 10.2 2.4 0.61 9.4 1.7 1.3 1 0 0 1 1 1 0 Haemolysin-III related DUF137 PF02006.11 gi|433590274|ref|YP_007279770.1| - 2.9e-72 241.7 2.3 3.7e-72 241.4 1.6 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF137 tRNA-synt_1b PF00579.20 gi|433590275|ref|YP_007279771.1| - 1.5e-51 175.2 0.0 2.1e-51 174.8 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (W and Y) tRNA-synt_1f PF01921.13 gi|433590275|ref|YP_007279771.1| - 0.051 12.2 0.0 5.5 5.5 0.0 2.2 2 0 0 2 2 2 0 tRNA synthetases class I (K) DNA_gyraseB_C PF00986.16 gi|433590275|ref|YP_007279771.1| - 0.089 12.5 0.2 0.21 11.3 0.1 1.6 1 0 0 1 1 1 0 DNA gyrase B subunit, carboxyl terminus BPL_LplA_LipB PF03099.14 gi|433590276|ref|YP_007279772.1| - 2.8e-18 66.1 0.0 4.2e-18 65.5 0.0 1.3 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family HTH_11 PF08279.7 gi|433590276|ref|YP_007279772.1| - 1.2e-14 53.7 0.0 2e-14 52.9 0.0 1.4 1 0 0 1 1 1 1 HTH domain BPL_C PF02237.12 gi|433590276|ref|YP_007279772.1| - 2.8e-12 46.1 0.3 5e-12 45.3 0.2 1.4 1 0 0 1 1 1 1 Biotin protein ligase C terminal domain HTH_20 PF12840.2 gi|433590276|ref|YP_007279772.1| - 1.6e-08 34.2 0.1 5.6e-08 32.4 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|433590276|ref|YP_007279772.1| - 7.1e-07 28.7 0.0 1.2e-06 28.1 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|433590276|ref|YP_007279772.1| - 1.7e-06 27.2 0.0 3.4e-06 26.3 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|433590276|ref|YP_007279772.1| - 0.00088 18.9 0.0 0.0027 17.3 0.0 1.9 1 0 0 1 1 1 1 MarR family HTH_AsnC-type PF13404.1 gi|433590276|ref|YP_007279772.1| - 0.0028 17.1 0.1 0.01 15.3 0.1 2.1 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_23 PF13384.1 gi|433590276|ref|YP_007279772.1| - 0.0044 16.6 0.0 0.015 14.9 0.0 1.9 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.1 gi|433590276|ref|YP_007279772.1| - 0.011 15.6 0.0 0.032 14.2 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain TrmB PF01978.14 gi|433590276|ref|YP_007279772.1| - 0.13 12.0 0.0 0.25 11.0 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Usp PF00582.21 gi|433590277|ref|YP_007279773.1| - 7.6e-37 126.6 0.5 8.7e-37 126.4 0.3 1.0 1 0 0 1 1 1 1 Universal stress protein family FlaC_arch PF05377.6 gi|433590279|ref|YP_007279775.1| - 0.041 13.7 1.4 0.049 13.5 0.9 1.1 1 0 0 1 1 1 0 Flagella accessory protein C (FlaC) RHH_1 PF01402.16 gi|433590279|ref|YP_007279775.1| - 0.22 11.4 2.7 0.69 9.8 0.6 2.0 1 1 1 2 2 2 0 Ribbon-helix-helix protein, copG family CARDB PF07705.6 gi|433590281|ref|YP_007279777.1| - 1.9e-11 43.8 17.4 1.7e-06 27.9 0.3 4.9 5 1 0 5 5 5 2 CARDB BioY PF02632.9 gi|433590282|ref|YP_007279778.1| - 8.4e-39 132.5 19.7 8.4e-39 132.5 13.6 1.3 2 0 0 2 2 2 1 BioY family ECF-ribofla_trS PF07155.7 gi|433590282|ref|YP_007279778.1| - 0.69 9.6 17.6 6.4 6.4 12.2 2.3 1 1 0 1 1 1 0 ECF-type riboflavin transporter, S component DUF2269 PF10027.4 gi|433590282|ref|YP_007279778.1| - 1 9.1 11.9 0.16 11.7 4.0 2.3 2 1 0 2 2 2 0 Predicted integral membrane protein (DUF2269) DUF3816 PF12822.2 gi|433590282|ref|YP_007279778.1| - 2.4 8.0 22.3 7.7 6.3 15.5 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF3816) ABC_tran PF00005.22 gi|433590283|ref|YP_007279779.1| - 2.2e-28 99.2 0.0 2.8e-28 98.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|433590283|ref|YP_007279779.1| - 7.8e-09 35.9 0.0 0.00074 19.5 0.0 2.1 2 0 0 2 2 2 2 AAA domain SbcCD_C PF13558.1 gi|433590283|ref|YP_007279779.1| - 3.1e-05 23.8 0.1 0.00024 20.9 0.1 2.0 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_29 PF13555.1 gi|433590283|ref|YP_007279779.1| - 0.00016 21.1 0.1 0.00029 20.3 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|433590283|ref|YP_007279779.1| - 0.00025 20.3 0.0 0.0015 17.7 0.0 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|433590283|ref|YP_007279779.1| - 0.0016 17.5 0.0 1.4 7.9 0.0 2.0 2 0 0 2 2 2 2 AAA ATPase domain AAA_10 PF12846.2 gi|433590283|ref|YP_007279779.1| - 0.003 17.0 0.0 1.4 8.3 0.0 2.1 1 1 0 2 2 2 2 AAA-like domain AAA_25 PF13481.1 gi|433590283|ref|YP_007279779.1| - 0.0072 15.7 0.5 0.048 13.0 0.0 2.2 2 1 0 2 2 2 1 AAA domain AAA_23 PF13476.1 gi|433590283|ref|YP_007279779.1| - 0.01 16.2 0.0 0.013 15.8 0.0 1.1 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|433590283|ref|YP_007279779.1| - 0.016 15.2 1.1 0.037 14.0 0.8 1.8 1 1 0 1 1 1 0 AAA ATPase domain AAA_22 PF13401.1 gi|433590283|ref|YP_007279779.1| - 0.042 13.9 0.1 0.14 12.2 0.0 1.7 2 0 0 2 2 2 0 AAA domain NACHT PF05729.7 gi|433590283|ref|YP_007279779.1| - 0.11 12.1 0.1 0.18 11.4 0.0 1.3 1 0 0 1 1 1 0 NACHT domain AAA_19 PF13245.1 gi|433590283|ref|YP_007279779.1| - 0.13 12.0 1.2 1.9 8.2 0.0 2.7 3 0 0 3 3 3 0 Part of AAA domain Zeta_toxin PF06414.7 gi|433590283|ref|YP_007279779.1| - 0.13 11.3 0.0 0.19 10.7 0.0 1.2 1 0 0 1 1 1 0 Zeta toxin cobW PF02492.14 gi|433590283|ref|YP_007279779.1| - 0.14 11.5 0.1 0.24 10.8 0.1 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain DUF3584 PF12128.3 gi|433590283|ref|YP_007279779.1| - 0.2 8.9 0.1 0.28 8.4 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) CbiQ PF02361.11 gi|433590284|ref|YP_007279780.1| - 4.6e-15 55.8 6.9 8.1e-15 54.9 4.8 1.4 1 1 0 1 1 1 1 Cobalt transport protein DDE_Tnp_1 PF01609.16 gi|433590285|ref|YP_007279781.1| - 3.6e-07 29.9 0.4 1.3e-06 28.1 0.0 2.1 2 1 0 2 2 2 1 Transposase DDE domain DUF772 PF05598.6 gi|433590285|ref|YP_007279781.1| - 0.0009 19.0 0.0 0.029 14.2 0.0 2.6 2 0 0 2 2 2 1 Transposase domain (DUF772) DDE_Tnp_2 PF04693.7 gi|433590285|ref|YP_007279781.1| - 0.099 11.6 0.0 0.2 10.6 0.0 1.4 1 0 0 1 1 1 0 Archaeal putative transposase ISC1217 Polysacc_deac_1 PF01522.16 gi|433590287|ref|YP_007279783.1| - 6.1e-20 71.1 0.0 1.1e-19 70.2 0.0 1.4 1 0 0 1 1 1 1 Polysaccharide deacetylase Met_10 PF02475.11 gi|433590289|ref|YP_007279785.1| - 1.4e-58 197.7 0.0 2e-58 197.3 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_26 PF13659.1 gi|433590289|ref|YP_007279785.1| - 3.9e-10 39.7 0.6 5.7e-09 36.0 0.1 2.3 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|433590289|ref|YP_007279785.1| - 1.1e-09 38.8 0.1 5.2e-09 36.6 0.0 2.2 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|433590289|ref|YP_007279785.1| - 4.6e-08 32.7 0.0 7.3e-08 32.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.5 gi|433590289|ref|YP_007279785.1| - 2.2e-06 27.3 0.0 3.1e-06 26.8 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase MTS PF05175.9 gi|433590289|ref|YP_007279785.1| - 7.8e-06 25.3 0.0 1.4e-05 24.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain UPF0020 PF01170.13 gi|433590289|ref|YP_007279785.1| - 0.00012 21.7 0.0 0.0002 21.0 0.0 1.3 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Cons_hypoth95 PF03602.10 gi|433590289|ref|YP_007279785.1| - 0.00014 21.3 0.1 0.00055 19.3 0.0 1.8 2 0 0 2 2 2 1 Conserved hypothetical protein 95 Methyltransf_25 PF13649.1 gi|433590289|ref|YP_007279785.1| - 0.00024 21.3 0.0 0.00053 20.2 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|433590289|ref|YP_007279785.1| - 0.00029 20.0 0.0 0.00049 19.3 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_24 PF13578.1 gi|433590289|ref|YP_007279785.1| - 0.00079 20.2 0.3 0.0031 18.3 0.1 2.1 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|433590289|ref|YP_007279785.1| - 0.00088 19.0 0.0 0.0016 18.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|433590289|ref|YP_007279785.1| - 0.0028 18.0 0.0 0.007 16.8 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain DNA_methylase PF00145.12 gi|433590289|ref|YP_007279785.1| - 0.087 11.9 0.0 0.13 11.3 0.0 1.1 1 0 0 1 1 1 0 C-5 cytosine-specific DNA methylase TRM PF02005.11 gi|433590289|ref|YP_007279785.1| - 0.13 11.1 0.0 0.19 10.5 0.0 1.3 1 0 0 1 1 1 0 N2,N2-dimethylguanosine tRNA methyltransferase MethyltransfD12 PF02086.10 gi|433590289|ref|YP_007279785.1| - 0.17 11.3 0.0 0.26 10.6 0.0 1.3 1 0 0 1 1 1 0 D12 class N6 adenine-specific DNA methyltransferase Rieske PF00355.21 gi|433590290|ref|YP_007279786.1| - 8.9e-10 38.0 0.1 1.1e-09 37.6 0.1 1.2 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Rieske_2 PF13806.1 gi|433590290|ref|YP_007279786.1| - 0.088 12.5 0.0 0.11 12.1 0.0 1.3 1 0 0 1 1 1 0 Rieske-like [2Fe-2S] domain TP_methylase PF00590.15 gi|433590291|ref|YP_007279787.1| - 5e-20 72.1 1.6 7.1e-20 71.6 1.1 1.2 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases FA_desaturase PF00487.19 gi|433590292|ref|YP_007279788.1| - 0.024 14.0 0.7 0.044 13.2 0.5 1.4 1 0 0 1 1 1 0 Fatty acid desaturase MARVEL PF01284.18 gi|433590292|ref|YP_007279788.1| - 4.3 7.1 14.5 4.5 7.0 6.9 2.1 1 1 1 2 2 2 0 Membrane-associating domain DUF3040 PF11239.3 gi|433590292|ref|YP_007279788.1| - 5.8 7.0 10.2 5.2 7.1 3.7 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3040) DUF3464 PF11947.3 gi|433590292|ref|YP_007279788.1| - 8.8 5.7 6.3 25 4.2 0.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3464) Abhydrolase_6 PF12697.2 gi|433590293|ref|YP_007279789.1| - 1.8e-30 106.5 0.0 3.2e-30 105.7 0.0 1.4 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|433590293|ref|YP_007279789.1| - 1.1e-15 57.5 0.0 2.5e-15 56.4 0.0 1.5 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|433590293|ref|YP_007279789.1| - 2.2e-15 56.8 0.8 4.8e-15 55.7 0.6 1.7 1 1 0 1 1 1 1 alpha/beta hydrolase fold Ndr PF03096.9 gi|433590293|ref|YP_007279789.1| - 0.00058 18.4 0.0 0.00082 17.9 0.0 1.1 1 0 0 1 1 1 1 Ndr family Hydrolase_4 PF12146.3 gi|433590293|ref|YP_007279789.1| - 0.0018 18.0 0.1 0.0042 16.9 0.1 1.6 1 0 0 1 1 1 1 Putative lysophospholipase DUF1057 PF06342.7 gi|433590293|ref|YP_007279789.1| - 0.028 13.2 0.0 0.039 12.7 0.0 1.2 1 0 0 1 1 1 0 Alpha/beta hydrolase of unknown function (DUF1057) PGAP1 PF07819.8 gi|433590293|ref|YP_007279789.1| - 0.092 12.3 0.1 13 5.2 0.0 2.1 1 1 1 2 2 2 0 PGAP1-like protein Abhydrolase_3 PF07859.8 gi|433590293|ref|YP_007279789.1| - 0.13 11.8 0.0 0.8 9.2 0.0 2.0 2 0 0 2 2 2 0 alpha/beta hydrolase fold MFS_1 PF07690.11 gi|433590294|ref|YP_007279790.1| - 5.1e-32 110.9 70.5 1.4e-25 89.7 30.6 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily ApbA PF02558.11 gi|433590294|ref|YP_007279790.1| - 5.5 6.4 6.6 8.4 5.8 0.3 2.6 3 0 0 3 3 3 0 Ketopantoate reductase PanE/ApbA Iso_dh PF00180.15 gi|433590295|ref|YP_007279791.1| - 2.4e-90 303.0 0.0 2.7e-90 302.8 0.0 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase EamA PF00892.15 gi|433590296|ref|YP_007279792.1| - 2.3e-35 121.3 28.7 1.1e-18 67.5 5.8 2.1 2 0 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|433590296|ref|YP_007279792.1| - 7.8e-05 22.8 7.0 7.8e-05 22.8 4.8 4.1 2 2 2 4 4 4 1 Multidrug resistance efflux transporter TPT PF03151.11 gi|433590296|ref|YP_007279792.1| - 0.043 13.4 16.5 0.32 10.6 0.8 2.9 2 1 0 2 2 2 0 Triose-phosphate Transporter family SLAC1 PF03595.12 gi|433590296|ref|YP_007279792.1| - 2.8 6.5 25.3 4 5.9 7.1 2.2 1 1 1 2 2 2 0 Voltage-dependent anion channel Aconitase_C PF00694.14 gi|433590297|ref|YP_007279793.1| - 8.9e-22 77.6 0.0 1.4e-21 76.9 0.0 1.3 1 0 0 1 1 1 1 Aconitase C-terminal domain Aconitase PF00330.15 gi|433590298|ref|YP_007279794.1| - 2.5e-147 491.1 0.0 2.8e-147 490.9 0.0 1.0 1 0 0 1 1 1 1 Aconitase family (aconitate hydratase) DUF521 PF04412.8 gi|433590298|ref|YP_007279794.1| - 0.0041 15.7 0.0 0.0065 15.0 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF521) IlvN PF07991.7 gi|433590300|ref|YP_007279796.1| - 1.7e-70 235.6 0.1 2.3e-70 235.2 0.1 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain IlvC PF01450.14 gi|433590300|ref|YP_007279796.1| - 4e-56 188.9 0.1 5.3e-56 188.5 0.1 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain NAD_binding_2 PF03446.10 gi|433590300|ref|YP_007279796.1| - 2.7e-06 27.3 0.0 5.3e-06 26.3 0.0 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.12 gi|433590300|ref|YP_007279796.1| - 5.9e-06 26.6 0.1 1.1e-05 25.7 0.0 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.14 gi|433590300|ref|YP_007279796.1| - 7.2e-05 22.0 0.0 0.00013 21.2 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ApbA PF02558.11 gi|433590300|ref|YP_007279796.1| - 0.0053 16.2 0.2 0.0094 15.4 0.1 1.5 1 1 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NaeI PF09126.5 gi|433590300|ref|YP_007279796.1| - 0.057 12.0 0.1 0.46 9.0 0.0 2.0 2 0 0 2 2 2 0 Restriction endonuclease NaeI GFO_IDH_MocA PF01408.17 gi|433590300|ref|YP_007279796.1| - 0.1 13.1 0.1 0.22 12.0 0.1 1.5 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold ALS_ss_C PF10369.4 gi|433590301|ref|YP_007279797.1| - 8.5e-23 79.8 0.3 1.4e-22 79.1 0.2 1.4 1 0 0 1 1 1 1 Small subunit of acetolactate synthase ACT_5 PF13710.1 gi|433590301|ref|YP_007279797.1| - 7.3e-17 60.9 0.0 3.8e-16 58.6 0.0 2.0 2 0 0 2 2 2 1 ACT domain ACT PF01842.20 gi|433590301|ref|YP_007279797.1| - 2.5e-13 49.1 0.0 6.4e-13 47.8 0.0 1.7 1 0 0 1 1 1 1 ACT domain ACT_4 PF13291.1 gi|433590301|ref|YP_007279797.1| - 0.0014 18.8 0.0 0.0029 17.9 0.0 1.5 1 0 0 1 1 1 1 ACT domain TPP_enzyme_N PF02776.13 gi|433590302|ref|YP_007279798.1| - 1.2e-52 177.9 0.3 2.5e-52 176.8 0.2 1.6 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.16 gi|433590302|ref|YP_007279798.1| - 1.1e-48 164.6 1.7 1.7e-48 164.0 0.1 2.2 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.17 gi|433590302|ref|YP_007279798.1| - 1.9e-41 141.0 0.5 5.7e-41 139.4 0.0 2.1 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, central domain CO_dh PF02552.11 gi|433590302|ref|YP_007279798.1| - 0.011 15.3 0.0 0.018 14.6 0.0 1.3 1 0 0 1 1 1 0 CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit HMGL-like PF00682.14 gi|433590304|ref|YP_007279800.1| - 7.7e-68 228.6 5.5 1.1e-67 228.1 3.8 1.3 1 0 0 1 1 1 1 HMGL-like Asp_protease PF09668.5 gi|433590304|ref|YP_007279800.1| - 0.096 12.2 0.1 0.2 11.2 0.0 1.5 1 0 0 1 1 1 0 Aspartyl protease Ferritin PF00210.19 gi|433590305|ref|YP_007279801.1| - 1e-20 73.9 0.7 1.1e-20 73.7 0.5 1.0 1 0 0 1 1 1 1 Ferritin-like domain Rubrerythrin PF02915.12 gi|433590305|ref|YP_007279801.1| - 6.3e-10 39.5 0.4 7.2e-10 39.3 0.3 1.0 1 0 0 1 1 1 1 Rubrerythrin DUF2383 PF09537.5 gi|433590305|ref|YP_007279801.1| - 0.0003 21.0 2.2 0.0064 16.7 0.4 2.3 1 1 1 2 2 2 2 Domain of unknown function (DUF2383) Ferritin_2 PF13668.1 gi|433590305|ref|YP_007279801.1| - 0.00045 20.1 0.2 0.00052 19.9 0.2 1.1 1 0 0 1 1 1 1 Ferritin-like domain DUF4439 PF14530.1 gi|433590305|ref|YP_007279801.1| - 0.0013 19.2 0.2 0.0017 18.8 0.1 1.3 1 1 0 1 1 1 1 Domain of unknown function (DUF4439) DUF892 PF05974.7 gi|433590305|ref|YP_007279801.1| - 0.0016 18.2 3.4 0.0051 16.6 2.3 1.8 1 1 0 1 1 1 1 Domain of unknown function (DUF892) GatB_Yqey PF02637.13 gi|433590305|ref|YP_007279801.1| - 0.029 14.0 0.4 0.048 13.3 0.3 1.5 1 1 0 1 1 1 0 GatB domain Glyoxalase_2 PF12681.2 gi|433590308|ref|YP_007279804.1| - 1.2e-26 93.4 1.9 9.4e-13 48.7 0.2 2.1 2 0 0 2 2 2 2 Glyoxalase-like domain Glyoxalase PF00903.20 gi|433590308|ref|YP_007279804.1| - 4.5e-11 42.8 0.0 4.8e-05 23.3 0.0 3.2 2 1 0 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.1 gi|433590308|ref|YP_007279804.1| - 0.00013 21.9 0.4 0.0061 16.5 0.1 2.8 2 1 0 2 2 2 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.1 gi|433590308|ref|YP_007279804.1| - 0.012 15.5 0.4 1.2 9.0 0.1 2.8 2 1 0 2 2 2 0 Glyoxalase-like domain Acetyltransf_1 PF00583.19 gi|433590308|ref|YP_007279804.1| - 0.13 12.2 0.1 0.43 10.6 0.0 1.9 2 0 0 2 2 2 0 Acetyltransferase (GNAT) family TPR_16 PF13432.1 gi|433590308|ref|YP_007279804.1| - 0.4 11.4 0.2 0.4 11.4 0.1 2.6 3 0 0 3 3 3 0 Tetratricopeptide repeat Drf_FH1 PF06346.7 gi|433590310|ref|YP_007279806.1| - 0.02 14.4 1.2 0.025 14.0 0.4 1.5 1 1 0 1 1 1 0 Formin Homology Region 1 RHH_1 PF01402.16 gi|433590311|ref|YP_007279807.1| - 0.00027 20.6 0.2 0.0011 18.7 0.0 1.8 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family GvpK PF05121.7 gi|433590311|ref|YP_007279807.1| - 0.023 14.5 0.1 0.032 14.0 0.1 1.2 1 0 0 1 1 1 0 Gas vesicle protein K SHOCT PF09851.4 gi|433590311|ref|YP_007279807.1| - 0.045 13.2 2.6 0.07 12.6 1.8 1.4 1 0 0 1 1 1 0 Short C-terminal domain PG_binding_2 PF08823.6 gi|433590311|ref|YP_007279807.1| - 0.063 13.3 0.2 0.16 12.0 0.1 1.6 2 0 0 2 2 2 0 Putative peptidoglycan binding domain DUF2795 PF11387.3 gi|433590312|ref|YP_007279808.1| - 0.011 15.5 0.1 3.4 7.6 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2795) Glycos_transf_2 PF00535.21 gi|433590313|ref|YP_007279809.1| - 3.9e-19 68.9 0.1 5.6e-19 68.4 0.1 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|433590313|ref|YP_007279809.1| - 7.8e-14 52.0 0.0 1.2e-13 51.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|433590313|ref|YP_007279809.1| - 0.0055 16.9 0.0 0.012 15.9 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferase family 2 DUF2910 PF11139.3 gi|433590313|ref|YP_007279809.1| - 0.021 13.9 0.1 0.027 13.6 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2910) MR_MLE PF01188.16 gi|433590313|ref|YP_007279809.1| - 0.079 13.5 0.1 0.18 12.3 0.0 1.5 1 0 0 1 1 1 0 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain UDPG_MGDP_dh_N PF03721.9 gi|433590314|ref|YP_007279810.1| - 1.3e-51 174.6 0.1 2.4e-51 173.7 0.1 1.5 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.14 gi|433590314|ref|YP_007279810.1| - 1.3e-31 108.6 0.0 2.3e-31 107.8 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.10 gi|433590314|ref|YP_007279810.1| - 5.7e-26 90.7 0.1 1.6e-25 89.3 0.0 1.7 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain F420_oxidored PF03807.12 gi|433590314|ref|YP_007279810.1| - 4.4e-06 27.0 0.2 0.0052 17.1 0.0 4.1 3 1 0 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent NAD_Gly3P_dh_N PF01210.18 gi|433590314|ref|YP_007279810.1| - 2.7e-05 23.9 0.0 7e-05 22.6 0.0 1.7 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 3HCDH_N PF02737.13 gi|433590314|ref|YP_007279810.1| - 8.1e-05 22.3 0.1 0.00016 21.3 0.1 1.5 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.11 gi|433590314|ref|YP_007279810.1| - 0.00014 21.2 0.0 0.00027 20.4 0.0 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Pyr_redox PF00070.22 gi|433590314|ref|YP_007279810.1| - 0.0002 21.7 0.3 0.0017 18.7 0.1 2.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase B12-binding PF02310.14 gi|433590314|ref|YP_007279810.1| - 0.00078 19.3 1.4 1.1 9.1 0.0 3.6 3 1 0 3 3 3 1 B12 binding domain DUF3320 PF11784.3 gi|433590314|ref|YP_007279810.1| - 0.0011 18.4 0.1 0.0036 16.7 0.1 1.9 1 0 0 1 1 1 1 Protein of unknown function (DUF3320) DAO PF01266.19 gi|433590314|ref|YP_007279810.1| - 0.0089 14.9 0.2 0.0089 14.9 0.1 1.9 2 1 0 2 2 2 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|433590314|ref|YP_007279810.1| - 0.011 15.7 0.2 0.034 14.1 0.1 1.9 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain ThiF PF00899.16 gi|433590314|ref|YP_007279810.1| - 0.03 14.1 0.1 0.063 13.0 0.1 1.6 1 0 0 1 1 1 0 ThiF family 2-Hacid_dh_C PF02826.14 gi|433590314|ref|YP_007279810.1| - 0.039 13.0 0.0 0.77 8.8 0.0 2.4 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FAD_binding_3 PF01494.14 gi|433590314|ref|YP_007279810.1| - 0.067 12.2 0.3 0.14 11.1 0.1 1.6 2 0 0 2 2 2 0 FAD binding domain AlaDh_PNT_C PF01262.16 gi|433590314|ref|YP_007279810.1| - 0.094 12.2 0.1 0.17 11.4 0.1 1.4 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain TrkA_N PF02254.13 gi|433590314|ref|YP_007279810.1| - 0.12 12.3 3.8 0.16 11.9 0.1 2.8 3 1 0 3 3 3 0 TrkA-N domain Trp_halogenase PF04820.9 gi|433590314|ref|YP_007279810.1| - 0.24 9.9 0.3 0.35 9.4 0.2 1.2 1 0 0 1 1 1 0 Tryptophan halogenase NTP_transferase PF00483.18 gi|433590315|ref|YP_007279811.1| - 1.3e-41 142.5 0.0 1.5e-41 142.3 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|433590315|ref|YP_007279811.1| - 1.1e-13 51.5 0.0 1.4e-13 51.2 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.14 gi|433590315|ref|YP_007279811.1| - 2.3e-06 27.3 0.0 3e-05 23.6 0.0 2.1 2 0 0 2 2 2 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Polysacc_synt PF01943.12 gi|433590316|ref|YP_007279812.1| - 2.7e-24 85.9 29.2 2.7e-24 85.9 20.2 2.9 2 1 1 3 3 3 1 Polysaccharide biosynthesis protein Polysacc_synt_3 PF13440.1 gi|433590316|ref|YP_007279812.1| - 2.2e-20 73.1 28.8 2.2e-20 73.1 20.0 2.8 2 1 1 3 3 3 2 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.1 gi|433590316|ref|YP_007279812.1| - 2.3e-19 69.6 24.9 2.3e-19 69.6 17.2 3.7 3 1 0 3 3 3 1 Polysaccharide biosynthesis C-terminal domain MVIN PF03023.9 gi|433590316|ref|YP_007279812.1| - 3.4e-09 35.6 31.7 8e-09 34.4 22.0 1.8 1 1 0 1 1 1 1 MviN-like protein MatE PF01554.13 gi|433590316|ref|YP_007279812.1| - 5.1e-08 32.6 4.9 5.1e-08 32.6 3.4 4.1 2 2 1 3 3 3 2 MatE Epimerase PF01370.16 gi|433590317|ref|YP_007279813.1| - 1.8e-50 171.5 0.0 2.2e-50 171.2 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|433590317|ref|YP_007279813.1| - 6.8e-15 54.5 0.0 8.9e-15 54.1 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.12 gi|433590317|ref|YP_007279813.1| - 7.5e-15 54.5 0.0 1.2e-14 53.9 0.0 1.3 1 1 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.7 gi|433590317|ref|YP_007279813.1| - 1.5e-12 47.0 0.0 1.2e-09 37.4 0.0 2.1 1 1 0 1 1 1 1 Male sterility protein Polysacc_synt_2 PF02719.10 gi|433590317|ref|YP_007279813.1| - 6.3e-11 41.7 0.0 6.3e-05 22.0 0.0 2.4 2 1 0 2 2 2 2 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.1 gi|433590317|ref|YP_007279813.1| - 1.1e-05 25.5 0.0 2.7e-05 24.2 0.0 1.6 2 0 0 2 2 2 1 NADH(P)-binding adh_short PF00106.20 gi|433590317|ref|YP_007279813.1| - 0.00013 21.9 0.0 0.00055 19.8 0.0 1.9 1 1 0 1 1 1 1 short chain dehydrogenase NAD_binding_3 PF03447.11 gi|433590317|ref|YP_007279813.1| - 0.029 14.7 0.0 0.052 13.9 0.0 1.4 1 0 0 1 1 1 0 Homoserine dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.9 gi|433590317|ref|YP_007279813.1| - 0.033 13.5 0.0 0.046 13.0 0.0 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain KR PF08659.5 gi|433590317|ref|YP_007279813.1| - 0.041 13.5 0.0 0.26 10.9 0.0 2.0 2 0 0 2 2 2 0 KR domain DapB_N PF01113.15 gi|433590317|ref|YP_007279813.1| - 0.084 12.7 0.0 0.19 11.6 0.0 1.5 1 1 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus Sulfatase PF00884.18 gi|433590318|ref|YP_007279814.1| - 3.6e-42 144.6 0.0 6.6e-42 143.7 0.0 1.4 1 1 0 1 1 1 1 Sulfatase Phosphodiest PF01663.17 gi|433590318|ref|YP_007279814.1| - 9.5e-16 58.0 0.1 4.1e-08 32.9 0.0 2.3 2 0 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase DUF229 PF02995.12 gi|433590318|ref|YP_007279814.1| - 0.00071 18.1 0.0 0.00099 17.6 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF229) DUF1501 PF07394.7 gi|433590318|ref|YP_007279814.1| - 0.013 14.3 0.1 0.024 13.4 0.0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF1501) ScdA_N PF04405.9 gi|433590318|ref|YP_007279814.1| - 0.15 11.4 0.0 0.35 10.2 0.0 1.6 1 0 0 1 1 1 0 Domain of Unknown function (DUF542) DUF563 PF04577.9 gi|433590319|ref|YP_007279815.1| - 3.2e-46 157.8 0.0 4.6e-46 157.3 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF563) DDE_Tnp_1 PF01609.16 gi|433590320|ref|YP_007279816.1| - 3e-20 72.6 0.0 4.1e-20 72.2 0.0 1.1 1 0 0 1 1 1 1 Transposase DDE domain DUF563 PF04577.9 gi|433590321|ref|YP_007279817.1| - 2.8e-38 131.9 0.0 3.8e-38 131.4 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF563) Sulfatase PF00884.18 gi|433590322|ref|YP_007279818.1| - 0.00024 20.4 0.0 0.00031 20.0 0.0 1.1 1 0 0 1 1 1 1 Sulfatase PglZ PF08665.7 gi|433590322|ref|YP_007279818.1| - 0.003 17.2 0.1 0.027 14.1 0.0 2.1 2 0 0 2 2 2 1 PglZ domain DASH_Dam1 PF08653.5 gi|433590322|ref|YP_007279818.1| - 0.37 10.5 2.3 1.4 8.7 0.5 2.2 2 0 0 2 2 2 0 DASH complex subunit Dam1 Methyltransf_21 PF05050.7 gi|433590323|ref|YP_007279819.1| - 0.0019 18.1 0.0 0.0041 17.0 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase FkbM domain V_cholerae_RfbT PF05575.6 gi|433590323|ref|YP_007279819.1| - 0.0041 16.2 0.0 0.0071 15.4 0.0 1.3 1 0 0 1 1 1 1 Vibrio cholerae RfbT protein Met_10 PF02475.11 gi|433590323|ref|YP_007279819.1| - 0.0055 16.3 0.0 0.0086 15.6 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Glycos_transf_1 PF00534.15 gi|433590324|ref|YP_007279820.1| - 2.1e-34 118.4 0.0 3.1e-34 117.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|433590324|ref|YP_007279820.1| - 3.3e-21 75.8 0.2 2e-20 73.3 0.0 2.0 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|433590324|ref|YP_007279820.1| - 1.4e-13 51.3 0.6 1.4e-13 51.3 0.4 2.5 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.1 gi|433590324|ref|YP_007279820.1| - 8.8e-07 29.1 0.0 1.9e-06 28.0 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|433590324|ref|YP_007279820.1| - 0.0045 16.7 0.0 0.0086 15.8 0.0 1.5 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glycos_transf_1 PF00534.15 gi|433590325|ref|YP_007279821.1| - 1.4e-19 70.1 0.0 2.2e-19 69.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|433590325|ref|YP_007279821.1| - 4.4e-11 43.0 0.0 1.1e-10 41.7 0.0 1.6 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|433590325|ref|YP_007279821.1| - 8.2e-10 38.6 0.6 1.5e-09 37.8 0.4 1.5 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glycos_transf_2 PF00535.21 gi|433590326|ref|YP_007279822.1| - 9.7e-26 90.4 0.3 1.4e-25 89.9 0.2 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|433590326|ref|YP_007279822.1| - 1.5e-16 60.9 1.4 2e-16 60.5 1.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|433590326|ref|YP_007279822.1| - 7.4e-09 35.0 0.0 2.7e-08 33.2 0.0 1.8 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|433590326|ref|YP_007279822.1| - 0.00027 20.6 0.2 0.00051 19.8 0.2 1.6 1 0 0 1 1 1 1 Glycosyl transferase family group 2 STT3 PF02516.9 gi|433590327|ref|YP_007279823.1| - 1.5e-24 86.8 20.1 6.9e-24 84.6 13.9 2.3 1 1 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit DUF368 PF04018.8 gi|433590328|ref|YP_007279824.1| - 7.2e-70 235.1 13.5 7.2e-70 235.1 9.3 1.2 1 1 0 1 1 1 1 Domain of unknown function (DUF368) RseC_MucC PF04246.7 gi|433590328|ref|YP_007279824.1| - 9.5 5.7 19.1 3.7 7.1 0.4 3.5 1 1 1 3 3 3 0 Positive regulator of sigma(E), RseC/MucC AAA_16 PF13191.1 gi|433590329|ref|YP_007279825.1| - 5.1e-09 36.3 1.3 2.8e-08 33.9 0.1 2.7 1 1 1 2 2 2 1 AAA ATPase domain HTH_IclR PF09339.5 gi|433590329|ref|YP_007279825.1| - 0.0018 17.8 0.0 0.0045 16.5 0.0 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain AAA_22 PF13401.1 gi|433590329|ref|YP_007279825.1| - 0.012 15.7 0.0 0.025 14.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain Guanylate_kin PF00625.16 gi|433590329|ref|YP_007279825.1| - 0.023 14.1 0.0 0.041 13.3 0.0 1.3 1 0 0 1 1 1 0 Guanylate kinase MarR PF01047.17 gi|433590329|ref|YP_007279825.1| - 0.06 13.0 0.0 0.18 11.4 0.0 1.8 2 0 0 2 2 2 0 MarR family DUF1495 PF07381.6 gi|433590329|ref|YP_007279825.1| - 0.1 12.2 0.0 0.17 11.5 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) CCG PF02754.11 gi|433590330|ref|YP_007279826.1| - 6.6e-25 86.9 0.8 5.8e-12 45.4 0.0 2.6 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_8 PF13183.1 gi|433590330|ref|YP_007279826.1| - 6.8e-07 29.2 7.9 6.8e-07 29.2 5.5 2.7 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|433590330|ref|YP_007279826.1| - 1.4e-05 25.3 10.2 1.4e-05 25.3 7.0 3.3 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|433590330|ref|YP_007279826.1| - 0.00022 21.5 10.7 0.03 14.7 0.3 3.9 4 0 0 4 4 3 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|433590330|ref|YP_007279826.1| - 0.00045 20.4 15.6 0.0052 17.0 9.1 3.3 3 1 1 4 4 3 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|433590330|ref|YP_007279826.1| - 0.0012 18.6 7.8 0.12 12.3 0.5 3.1 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|433590330|ref|YP_007279826.1| - 0.0022 17.7 14.0 0.0022 17.7 9.7 3.2 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|433590330|ref|YP_007279826.1| - 0.021 15.5 14.9 0.04 14.6 7.6 3.2 3 1 1 4 4 4 0 4Fe-4S double cluster binding domain Fer4 PF00037.22 gi|433590330|ref|YP_007279826.1| - 0.093 12.3 14.0 0.093 12.3 1.5 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_7 PF12838.2 gi|433590330|ref|YP_007279826.1| - 0.1 13.0 20.0 0.04 14.3 10.1 2.9 3 1 1 4 4 2 0 4Fe-4S dicluster domain DUF3390 PF11870.3 gi|433590330|ref|YP_007279826.1| - 0.1 12.4 0.0 0.18 11.7 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3390) zf-CSL PF05207.8 gi|433590330|ref|YP_007279826.1| - 0.49 9.9 13.7 0.52 9.8 0.0 4.1 4 1 0 4 4 3 0 CSL zinc finger FAD_binding_2 PF00890.19 gi|433590331|ref|YP_007279827.1| - 2.5e-39 135.2 2.6 3e-39 135.0 1.8 1.0 1 0 0 1 1 1 1 FAD binding domain DAO PF01266.19 gi|433590331|ref|YP_007279827.1| - 6.5e-10 38.4 0.5 3.6e-05 22.8 0.2 2.5 3 0 0 3 3 3 2 FAD dependent oxidoreductase FAD_oxidored PF12831.2 gi|433590331|ref|YP_007279827.1| - 3e-08 33.1 3.1 9.3e-07 28.2 1.4 2.3 2 0 0 2 2 2 1 FAD dependent oxidoreductase GIDA PF01134.17 gi|433590331|ref|YP_007279827.1| - 5.5e-07 28.7 0.3 5.5e-07 28.7 0.2 1.6 2 0 0 2 2 2 1 Glucose inhibited division protein A Pyr_redox_2 PF07992.9 gi|433590331|ref|YP_007279827.1| - 5.9e-07 29.5 0.0 0.00048 20.0 0.0 2.5 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|433590331|ref|YP_007279827.1| - 1.5e-05 25.2 0.0 0.0057 17.0 0.3 2.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|433590331|ref|YP_007279827.1| - 0.0002 19.9 2.5 0.00037 19.0 0.1 2.2 3 0 0 3 3 3 1 HI0933-like protein FAD_binding_3 PF01494.14 gi|433590331|ref|YP_007279827.1| - 0.00094 18.3 0.5 0.0016 17.5 0.3 1.3 1 0 0 1 1 1 1 FAD binding domain NAD_binding_8 PF13450.1 gi|433590331|ref|YP_007279827.1| - 0.003 17.5 0.4 0.012 15.5 0.3 2.1 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Lycopene_cycl PF05834.7 gi|433590331|ref|YP_007279827.1| - 0.0037 16.2 0.2 0.0068 15.3 0.1 1.4 1 0 0 1 1 1 1 Lycopene cyclase protein Thi4 PF01946.12 gi|433590331|ref|YP_007279827.1| - 0.0064 15.6 0.2 0.01 14.9 0.1 1.2 1 0 0 1 1 1 1 Thi4 family 3HCDH_N PF02737.13 gi|433590331|ref|YP_007279827.1| - 0.041 13.5 0.2 0.069 12.7 0.2 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DAO PF01266.19 gi|433590332|ref|YP_007279828.1| - 1.3e-61 208.5 4.1 1.7e-61 208.0 2.8 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|433590332|ref|YP_007279828.1| - 2.1e-08 34.2 0.2 0.0034 17.2 0.1 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Fer2_BFD PF04324.10 gi|433590332|ref|YP_007279828.1| - 2.6e-07 30.5 5.1 2.6e-07 30.5 3.5 2.7 3 1 0 3 3 3 1 BFD-like [2Fe-2S] binding domain FAD_binding_2 PF00890.19 gi|433590332|ref|YP_007279828.1| - 3.4e-07 29.4 3.3 6.5e-07 28.5 2.3 1.4 1 1 0 1 1 1 1 FAD binding domain FAD_binding_3 PF01494.14 gi|433590332|ref|YP_007279828.1| - 1.3e-06 27.6 6.3 5.7e-06 25.6 4.4 1.9 1 1 0 1 1 1 1 FAD binding domain Pyr_redox PF00070.22 gi|433590332|ref|YP_007279828.1| - 0.00074 19.8 1.3 0.0022 18.3 0.4 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.2 gi|433590332|ref|YP_007279828.1| - 0.0011 18.0 8.5 0.0052 15.9 5.9 1.9 1 1 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_3 PF13738.1 gi|433590332|ref|YP_007279828.1| - 0.0012 18.9 0.1 0.78 9.7 0.0 2.3 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.13 gi|433590332|ref|YP_007279828.1| - 0.0032 17.1 0.1 0.0057 16.3 0.1 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_8 PF13450.1 gi|433590332|ref|YP_007279828.1| - 0.011 15.7 0.4 0.037 14.0 0.2 2.0 2 0 0 2 2 1 0 NAD(P)-binding Rossmann-like domain ApbA PF02558.11 gi|433590332|ref|YP_007279828.1| - 0.027 13.8 0.2 0.051 13.0 0.1 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA YbjQ_1 PF01906.12 gi|433590332|ref|YP_007279828.1| - 0.038 14.4 0.0 0.094 13.1 0.0 1.6 1 0 0 1 1 1 0 Putative heavy-metal-binding Thi4 PF01946.12 gi|433590332|ref|YP_007279828.1| - 0.059 12.4 1.1 0.13 11.3 0.1 1.9 2 1 0 2 2 2 0 Thi4 family GIDA PF01134.17 gi|433590332|ref|YP_007279828.1| - 0.12 11.2 0.9 0.21 10.3 0.1 1.7 2 0 0 2 2 2 0 Glucose inhibited division protein A FGGY_N PF00370.16 gi|433590333|ref|YP_007279829.1| - 8e-79 264.4 0.0 1e-78 264.0 0.0 1.1 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain FGGY_C PF02782.11 gi|433590333|ref|YP_007279829.1| - 3e-59 199.9 0.4 5.9e-59 199.0 0.3 1.5 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain BcrAD_BadFG PF01869.15 gi|433590333|ref|YP_007279829.1| - 0.00096 18.5 0.3 0.0023 17.2 0.0 1.8 2 0 0 2 2 2 1 BadF/BadG/BcrA/BcrD ATPase family Hydrolase_3 PF08282.7 gi|433590335|ref|YP_007279831.1| - 4.3e-24 85.4 0.0 2.4e-16 60.0 0.1 2.0 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|433590335|ref|YP_007279831.1| - 9.5e-07 29.4 1.1 4e-05 24.1 0.8 2.6 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase S6PP PF05116.8 gi|433590335|ref|YP_007279831.1| - 8.5e-06 25.2 0.0 8.2e-05 22.0 0.0 2.0 2 0 0 2 2 2 1 Sucrose-6F-phosphate phosphohydrolase HAD PF12710.2 gi|433590335|ref|YP_007279831.1| - 7.3e-05 23.0 1.5 0.0026 17.9 0.1 2.6 1 1 1 2 2 2 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|433590335|ref|YP_007279831.1| - 0.0036 17.5 0.4 0.17 12.0 0.3 2.7 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase BacteriocIIc_cy PF12173.3 gi|433590335|ref|YP_007279831.1| - 0.095 12.7 0.3 4.5 7.3 0.0 2.4 1 1 1 2 2 2 0 Bacteriocin class IIc cyclic gassericin A-like CaM_bdg_C0 PF10562.4 gi|433590335|ref|YP_007279831.1| - 5.5 6.9 5.3 20 5.1 0.2 2.4 2 0 0 2 2 2 0 Calmodulin-binding domain C0 of NMDA receptor NR1 subunit DUF456 PF04306.8 gi|433590338|ref|YP_007279834.1| - 0.0045 17.0 2.0 0.0056 16.7 1.4 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF456) DUF2976 PF11190.3 gi|433590338|ref|YP_007279834.1| - 0.14 11.7 0.6 0.22 11.0 0.4 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2976) Radical_SAM PF04055.16 gi|433590339|ref|YP_007279835.1| - 5.9e-20 72.0 0.3 3.1e-19 69.7 0.2 2.0 1 1 0 1 1 1 1 Radical SAM superfamily Wyosine_form PF08608.7 gi|433590339|ref|YP_007279835.1| - 4e-19 68.4 0.0 8.9e-19 67.3 0.0 1.6 1 0 0 1 1 1 1 Wyosine base formation HAD_2 PF13419.1 gi|433590339|ref|YP_007279835.1| - 0.0095 16.1 0.1 0.065 13.4 0.0 2.2 2 1 1 3 3 3 1 Haloacid dehalogenase-like hydrolase Fer4_12 PF13353.1 gi|433590339|ref|YP_007279835.1| - 0.049 13.7 0.0 0.11 12.6 0.0 1.5 1 1 0 1 1 1 0 4Fe-4S single cluster domain DICT PF10069.4 gi|433590340|ref|YP_007279836.1| - 6.4e-18 64.5 0.0 9.4e-18 63.9 0.0 1.2 1 0 0 1 1 1 1 Sensory domain found in DIguanylate Cyclases & Two-component systems CTP-dep_RFKase PF01982.11 gi|433590341|ref|YP_007279837.1| - 7.4e-44 148.2 0.0 1.1e-43 147.6 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF120 HTH_20 PF12840.2 gi|433590341|ref|YP_007279837.1| - 7.5e-08 32.0 0.9 1.3e-07 31.3 0.6 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|433590341|ref|YP_007279837.1| - 6.9e-06 25.6 0.5 1.3e-05 24.7 0.4 1.5 1 0 0 1 1 1 1 MarR family HTH_AsnC-type PF13404.1 gi|433590341|ref|YP_007279837.1| - 5.6e-05 22.5 0.7 5.6e-05 22.5 0.5 2.0 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.1 gi|433590341|ref|YP_007279837.1| - 6.2e-05 22.2 0.2 0.0001 21.6 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.17 gi|433590341|ref|YP_007279837.1| - 0.00042 19.9 0.1 0.0008 19.0 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|433590341|ref|YP_007279837.1| - 0.00054 20.2 0.3 0.00095 19.4 0.2 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_11 PF08279.7 gi|433590341|ref|YP_007279837.1| - 0.0012 18.4 0.1 0.0022 17.6 0.1 1.4 1 0 0 1 1 1 1 HTH domain Fe_dep_repress PF01325.14 gi|433590341|ref|YP_007279837.1| - 0.0014 18.5 0.0 0.0029 17.4 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_34 PF13601.1 gi|433590341|ref|YP_007279837.1| - 0.0025 17.7 0.0 0.0056 16.6 0.0 1.6 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_DeoR PF08220.7 gi|433590341|ref|YP_007279837.1| - 0.008 15.6 0.1 0.014 14.8 0.1 1.4 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_1 PF00126.22 gi|433590341|ref|YP_007279837.1| - 0.0092 15.7 0.1 0.019 14.6 0.1 1.6 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_Crp_2 PF13545.1 gi|433590341|ref|YP_007279837.1| - 0.0099 15.6 0.1 0.021 14.6 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_IclR PF09339.5 gi|433590341|ref|YP_007279837.1| - 0.071 12.7 0.8 0.12 12.0 0.6 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain GntR PF00392.16 gi|433590341|ref|YP_007279837.1| - 0.1 12.0 0.3 0.19 11.1 0.2 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family Dimerisation PF08100.6 gi|433590341|ref|YP_007279837.1| - 0.12 12.2 0.0 0.21 11.4 0.0 1.3 1 0 0 1 1 1 0 Dimerisation domain DHBP_synthase PF00926.14 gi|433590342|ref|YP_007279838.1| - 6.5e-58 195.1 0.0 7.4e-58 194.9 0.0 1.0 1 0 0 1 1 1 1 3,4-dihydroxy-2-butanone 4-phosphate synthase Aminotran_4 PF01063.14 gi|433590343|ref|YP_007279839.1| - 4.5e-46 157.1 0.0 5.4e-46 156.9 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class IV LacI PF00356.16 gi|433590343|ref|YP_007279839.1| - 0.13 11.8 0.0 1.3 8.6 0.0 2.2 2 0 0 2 2 2 0 Bacterial regulatory proteins, lacI family DUF502 PF04367.8 gi|433590344|ref|YP_007279840.1| - 5.5e-20 71.1 0.2 1e-19 70.3 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF502) MFS_1 PF07690.11 gi|433590345|ref|YP_007279841.1| - 3.6e-10 39.0 56.9 1.7e-05 23.7 23.3 2.7 1 1 1 2 2 2 2 Major Facilitator Superfamily DUF95 PF01944.12 gi|433590346|ref|YP_007279842.1| - 2.4e-27 95.6 9.0 2.4e-27 95.6 6.3 3.0 2 1 1 3 3 3 1 Integral membrane protein DUF95 SnoaL_2 PF12680.2 gi|433590347|ref|YP_007279843.1| - 1.7e-17 63.6 5.6 1.9e-17 63.5 3.9 1.0 1 0 0 1 1 1 1 SnoaL-like domain SnoaL PF07366.7 gi|433590347|ref|YP_007279843.1| - 5.9e-07 29.1 1.5 2.3e-06 27.2 1.0 1.8 1 1 0 1 1 1 1 SnoaL-like polyketide cyclase DUF4440 PF14534.1 gi|433590347|ref|YP_007279843.1| - 7e-07 29.4 1.5 8.5e-07 29.1 1.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4440) SnoaL_4 PF13577.1 gi|433590347|ref|YP_007279843.1| - 6e-05 22.9 1.1 6.9e-05 22.7 0.8 1.2 1 0 0 1 1 1 1 SnoaL-like domain NTF2 PF02136.15 gi|433590347|ref|YP_007279843.1| - 0.0016 18.8 0.1 0.0022 18.3 0.0 1.2 1 1 0 1 1 1 1 Nuclear transport factor 2 (NTF2) domain SnoaL_3 PF13474.1 gi|433590347|ref|YP_007279843.1| - 0.0079 16.2 0.2 0.0093 16.0 0.1 1.2 1 1 0 1 1 1 1 SnoaL-like domain LEH PF07858.7 gi|433590347|ref|YP_007279843.1| - 0.029 14.3 0.1 0.046 13.7 0.1 1.3 1 1 0 1 1 1 0 Limonene-1,2-epoxide hydrolase catalytic domain Metal_resist PF13801.1 gi|433590347|ref|YP_007279843.1| - 0.036 14.0 1.1 0.041 13.8 0.7 1.1 1 0 0 1 1 1 0 Heavy-metal resistance Lumazine_bd_2 PF12893.2 gi|433590347|ref|YP_007279843.1| - 0.099 13.1 0.1 0.13 12.7 0.1 1.2 1 0 0 1 1 1 0 Putative lumazine-binding AhpC-TSA PF00578.16 gi|433590348|ref|YP_007279844.1| - 1.4e-25 89.3 0.0 2.3e-25 88.6 0.0 1.3 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|433590348|ref|YP_007279844.1| - 1.2e-15 57.2 0.0 2e-15 56.6 0.0 1.4 1 0 0 1 1 1 1 Redoxin DUF899 PF05988.7 gi|433590348|ref|YP_007279844.1| - 0.0011 18.4 0.1 0.0024 17.3 0.1 1.6 1 1 0 1 1 1 1 Bacterial protein of unknown function (DUF899) HSCB_C PF07743.8 gi|433590348|ref|YP_007279844.1| - 1.2 9.6 4.4 0.95 9.9 0.3 2.2 2 0 0 2 2 2 0 HSCB C-terminal oligomerisation domain SNAP PF14938.1 gi|433590348|ref|YP_007279844.1| - 1.9 7.5 9.0 4.1 6.4 4.5 2.0 1 1 1 2 2 2 0 Soluble NSF attachment protein, SNAP DUF367 PF04034.8 gi|433590349|ref|YP_007279845.1| - 9.4e-44 148.0 0.0 1.1e-43 147.8 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF367) RLI PF04068.10 gi|433590349|ref|YP_007279845.1| - 7.9e-05 22.1 0.0 0.00013 21.4 0.0 1.3 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI DUF4131 PF13567.1 gi|433590350|ref|YP_007279846.1| - 6.8 6.0 13.6 1.7 7.9 2.6 2.8 2 1 1 3 3 3 0 Domain of unknown function (DUF4131) Ribosomal_L40e PF01020.12 gi|433590351|ref|YP_007279847.1| - 4.5e-05 22.9 7.2 5.5e-05 22.6 5.0 1.1 1 0 0 1 1 1 1 Ribosomal L40e family DZR PF12773.2 gi|433590351|ref|YP_007279847.1| - 0.0004 20.1 1.4 0.00047 19.9 1.0 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|433590351|ref|YP_007279847.1| - 0.0014 18.0 0.6 0.0018 17.7 0.4 1.2 1 0 0 1 1 1 1 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|433590351|ref|YP_007279847.1| - 0.011 14.9 0.6 0.015 14.5 0.4 1.3 1 0 0 1 1 1 0 zinc-ribbon domain zf-DHHC PF01529.15 gi|433590351|ref|YP_007279847.1| - 0.029 13.7 1.8 0.03 13.7 1.3 1.0 1 0 0 1 1 1 0 DHHC palmitoyltransferase zf-CHY PF05495.7 gi|433590351|ref|YP_007279847.1| - 0.041 14.0 1.5 0.052 13.7 1.1 1.3 1 0 0 1 1 1 0 CHY zinc finger DNA_RNApol_7kD PF03604.8 gi|433590351|ref|YP_007279847.1| - 0.072 12.5 6.8 0.14 11.6 4.7 1.4 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit Zn-ribbon_8 PF09723.5 gi|433590351|ref|YP_007279847.1| - 0.11 12.4 2.3 1.2 9.1 0.1 2.1 1 1 1 2 2 2 0 Zinc ribbon domain HypA PF01155.14 gi|433590351|ref|YP_007279847.1| - 0.15 11.7 1.4 0.16 11.6 0.9 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-RanBP PF00641.13 gi|433590351|ref|YP_007279847.1| - 0.19 10.8 2.8 0.26 10.4 1.9 1.2 1 0 0 1 1 1 0 Zn-finger in Ran binding protein and others UPF0547 PF10571.4 gi|433590351|ref|YP_007279847.1| - 0.61 9.8 3.5 1.4 8.6 2.5 1.7 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 Ribosomal_L37e PF01907.14 gi|433590351|ref|YP_007279847.1| - 0.86 9.4 5.9 1.2 8.9 4.1 1.3 1 1 0 1 1 1 0 Ribosomal protein L37e RNA_POL_M_15KD PF02150.11 gi|433590351|ref|YP_007279847.1| - 1.4 8.7 6.7 4.7 6.9 4.6 1.9 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit DUF35_N PF12172.3 gi|433590351|ref|YP_007279847.1| - 3.4 7.6 5.1 1.1 9.2 1.1 1.9 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) DUF1660 PF07874.6 gi|433590351|ref|YP_007279847.1| - 4.3 7.6 5.9 14 6.0 4.1 1.8 1 1 0 1 1 1 0 Prophage protein (DUF1660) Bac_rhodopsin PF01036.13 gi|433590352|ref|YP_007279848.1| - 7.1e-57 192.2 25.2 8.9e-57 191.9 17.5 1.1 1 0 0 1 1 1 1 Bacteriorhodopsin-like protein Lactamase_B PF00753.22 gi|433590353|ref|YP_007279849.1| - 3.4e-15 56.2 12.4 4e-15 55.9 8.3 1.4 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.1 gi|433590353|ref|YP_007279849.1| - 0.00018 21.2 3.3 0.00086 19.0 2.3 1.9 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.2 gi|433590353|ref|YP_007279849.1| - 0.0076 15.8 2.9 0.015 14.8 2.0 1.7 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Poly_export PF02563.11 gi|433590353|ref|YP_007279849.1| - 0.03 14.0 0.0 0.067 12.9 0.0 1.6 1 1 0 1 1 1 0 Polysaccharide biosynthesis/export protein DUF1967 PF09269.6 gi|433590353|ref|YP_007279849.1| - 0.072 12.7 0.1 0.28 10.8 0.0 2.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1967) DUF99 PF01949.11 gi|433590355|ref|YP_007279851.1| - 6.4e-46 155.8 0.0 7.8e-46 155.5 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF99 UDG PF03167.14 gi|433590356|ref|YP_007279852.1| - 2.9e-33 114.4 0.0 3.7e-33 114.1 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily PMT_2 PF13231.1 gi|433590357|ref|YP_007279853.1| - 0.0048 16.8 3.6 0.0048 16.8 2.5 1.4 2 0 0 2 2 2 1 Dolichyl-phosphate-mannose-protein mannosyltransferase Tic20 PF09685.5 gi|433590357|ref|YP_007279853.1| - 0.22 11.5 7.1 0.51 10.3 5.2 1.5 1 1 0 1 1 1 0 Tic20-like protein SUR7 PF06687.7 gi|433590357|ref|YP_007279853.1| - 0.38 10.2 2.6 0.6 9.6 1.8 1.3 1 0 0 1 1 1 0 SUR7/PalI family DUF4013 PF13197.1 gi|433590357|ref|YP_007279853.1| - 3.6 6.9 12.8 0.59 9.4 5.8 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF4013) GATase PF00117.23 gi|433590358|ref|YP_007279854.1| - 1.2e-33 116.2 0.0 1.3e-33 116.0 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.9 gi|433590358|ref|YP_007279854.1| - 4.9e-11 42.4 0.0 9.9e-11 41.4 0.0 1.5 1 1 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain SNO PF01174.14 gi|433590358|ref|YP_007279854.1| - 6.2e-06 25.9 0.0 2.3e-05 24.1 0.0 1.7 1 1 0 1 1 1 1 SNO glutamine amidotransferase family Peptidase_C26 PF07722.8 gi|433590358|ref|YP_007279854.1| - 6.1e-05 22.5 0.9 0.00084 18.8 0.6 2.5 1 1 0 1 1 1 1 Peptidase C26 DJ-1_PfpI PF01965.19 gi|433590358|ref|YP_007279854.1| - 0.012 15.1 0.0 0.021 14.3 0.0 1.4 1 0 0 1 1 1 0 DJ-1/PfpI family GATase_5 PF13507.1 gi|433590358|ref|YP_007279854.1| - 0.03 13.2 0.0 0.14 11.0 0.0 2.1 2 1 0 2 2 2 0 CobB/CobQ-like glutamine amidotransferase domain Cdc6_C PF09079.6 gi|433590360|ref|YP_007279856.1| - 6.9e-18 64.1 0.1 2.1e-17 62.6 0.0 1.9 2 0 0 2 2 2 1 CDC6, C terminal AAA_22 PF13401.1 gi|433590360|ref|YP_007279856.1| - 5.1e-12 46.0 0.5 1.8e-11 44.2 0.0 2.0 2 1 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|433590360|ref|YP_007279856.1| - 3.2e-11 43.5 0.7 3e-10 40.3 0.0 2.4 2 1 0 2 2 2 1 AAA ATPase domain AAA PF00004.24 gi|433590360|ref|YP_007279856.1| - 8.1e-07 29.3 0.1 2.8e-06 27.5 0.1 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DUF815 PF05673.8 gi|433590360|ref|YP_007279856.1| - 3.2e-05 22.9 0.0 5.6e-05 22.1 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF815) Sigma54_activat PF00158.21 gi|433590360|ref|YP_007279856.1| - 0.00017 21.0 0.0 0.00035 20.0 0.0 1.5 1 0 0 1 1 1 1 Sigma-54 interaction domain Arch_ATPase PF01637.13 gi|433590360|ref|YP_007279856.1| - 0.00032 20.4 0.0 0.00075 19.2 0.0 1.6 1 1 0 1 1 1 1 Archaeal ATPase AAA_2 PF07724.9 gi|433590360|ref|YP_007279856.1| - 0.00095 19.1 0.1 0.0019 18.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) Sigma54_activ_2 PF14532.1 gi|433590360|ref|YP_007279856.1| - 0.0018 18.3 0.0 0.0086 16.1 0.0 2.1 2 0 0 2 2 2 1 Sigma-54 interaction domain DEAD PF00270.24 gi|433590360|ref|YP_007279856.1| - 0.0057 16.1 2.1 0.53 9.7 1.5 2.3 1 1 0 1 1 1 1 DEAD/DEAH box helicase NACHT PF05729.7 gi|433590360|ref|YP_007279856.1| - 0.0076 15.9 0.0 0.025 14.2 0.0 1.8 2 0 0 2 2 2 1 NACHT domain AAA_5 PF07728.9 gi|433590360|ref|YP_007279856.1| - 0.0086 15.7 0.2 0.04 13.6 0.1 2.1 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) KaiC PF06745.8 gi|433590360|ref|YP_007279856.1| - 0.0093 15.1 0.0 0.017 14.2 0.0 1.5 1 0 0 1 1 1 1 KaiC PhoH PF02562.11 gi|433590360|ref|YP_007279856.1| - 0.011 14.9 0.1 4.1 6.5 0.0 2.3 2 0 0 2 2 2 0 PhoH-like protein IstB_IS21 PF01695.12 gi|433590360|ref|YP_007279856.1| - 0.018 14.4 0.7 0.14 11.5 0.1 2.5 2 1 1 3 3 3 0 IstB-like ATP binding protein DUF87 PF01935.12 gi|433590360|ref|YP_007279856.1| - 0.02 14.6 0.9 0.32 10.7 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function DUF87 Zot PF05707.7 gi|433590360|ref|YP_007279856.1| - 0.029 13.8 0.0 0.051 13.0 0.0 1.3 1 0 0 1 1 1 0 Zonular occludens toxin (Zot) KAP_NTPase PF07693.9 gi|433590360|ref|YP_007279856.1| - 0.035 13.0 0.0 0.095 11.6 0.0 1.7 1 1 1 2 2 2 0 KAP family P-loop domain RNA_helicase PF00910.17 gi|433590360|ref|YP_007279856.1| - 0.05 13.7 0.1 0.46 10.6 0.0 2.3 2 0 0 2 2 2 0 RNA helicase AAA_10 PF12846.2 gi|433590360|ref|YP_007279856.1| - 0.06 12.7 0.1 0.24 10.8 0.0 1.9 2 0 0 2 2 2 0 AAA-like domain FtsK_SpoIIIE PF01580.13 gi|433590360|ref|YP_007279856.1| - 0.067 12.6 0.1 0.24 10.8 0.0 1.9 2 0 0 2 2 2 0 FtsK/SpoIIIE family NB-ARC PF00931.17 gi|433590360|ref|YP_007279856.1| - 0.069 12.0 0.0 0.1 11.4 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain DUF2075 PF09848.4 gi|433590360|ref|YP_007279856.1| - 0.077 11.9 0.0 0.11 11.5 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) SWIM PF04434.12 gi|433590361|ref|YP_007279857.1| - 0.084 12.3 3.1 0.81 9.2 2.1 2.1 1 1 0 1 1 1 0 SWIM zinc finger TRM PF02005.11 gi|433590362|ref|YP_007279858.1| - 5.8e-85 285.4 0.0 6.4e-85 285.3 0.0 1.0 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Methyltransf_26 PF13659.1 gi|433590362|ref|YP_007279858.1| - 8e-07 29.1 1.2 1.7e-06 28.0 0.8 1.6 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|433590362|ref|YP_007279858.1| - 8.3e-07 28.5 0.0 1.4e-06 27.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.8 gi|433590362|ref|YP_007279858.1| - 1.7e-05 24.1 0.0 2.6e-05 23.5 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_31 PF13847.1 gi|433590362|ref|YP_007279858.1| - 2.6e-05 23.8 0.0 3.8e-05 23.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|433590362|ref|YP_007279858.1| - 0.0008 19.9 0.1 0.002 18.6 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain UPF0020 PF01170.13 gi|433590362|ref|YP_007279858.1| - 0.005 16.4 0.0 0.0089 15.6 0.0 1.4 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Cons_hypoth95 PF03602.10 gi|433590362|ref|YP_007279858.1| - 0.011 15.1 0.0 0.018 14.4 0.0 1.2 1 0 0 1 1 1 0 Conserved hypothetical protein 95 Zn-ribbon_8 PF09723.5 gi|433590362|ref|YP_007279858.1| - 0.036 14.0 0.2 0.12 12.3 0.2 1.8 1 0 0 1 1 1 0 Zinc ribbon domain Methyltransf_12 PF08242.7 gi|433590362|ref|YP_007279858.1| - 0.098 13.1 0.0 0.21 12.0 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_11 PF08241.7 gi|433590362|ref|YP_007279858.1| - 0.13 12.8 0.0 0.29 11.6 0.0 1.7 1 0 0 1 1 1 0 Methyltransferase domain TehB PF03848.9 gi|433590362|ref|YP_007279858.1| - 0.13 11.3 0.0 0.21 10.7 0.0 1.2 1 0 0 1 1 1 0 Tellurite resistance protein TehB Zn_Tnp_IS1595 PF12760.2 gi|433590363|ref|YP_007279859.1| - 0.0012 18.6 1.8 0.74 9.6 0.4 2.1 2 0 0 2 2 2 2 Transposase zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|433590363|ref|YP_007279859.1| - 0.018 14.2 2.5 1.8 7.8 0.0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-Mss51 PF13824.1 gi|433590363|ref|YP_007279859.1| - 0.021 14.6 0.2 4.6 7.1 0.0 2.1 2 0 0 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 Auto_anti-p27 PF06677.7 gi|433590363|ref|YP_007279859.1| - 0.023 14.4 2.1 1.6 8.5 0.1 2.2 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zinc_ribbon_2 PF13240.1 gi|433590363|ref|YP_007279859.1| - 0.038 13.5 2.8 4.1 7.0 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain UPF0547 PF10571.4 gi|433590363|ref|YP_007279859.1| - 0.045 13.4 4.8 1.3 8.7 0.1 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 DZR PF12773.2 gi|433590363|ref|YP_007279859.1| - 0.066 13.0 2.5 0.17 11.6 1.7 1.7 1 1 0 1 1 1 0 Double zinc ribbon DUF35_N PF12172.3 gi|433590363|ref|YP_007279859.1| - 0.066 13.1 3.9 3.5 7.6 0.2 2.3 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Rubredoxin PF00301.15 gi|433590363|ref|YP_007279859.1| - 0.068 13.0 4.5 0.84 9.5 0.1 2.2 2 0 0 2 2 2 0 Rubredoxin TF_Zn_Ribbon PF08271.7 gi|433590363|ref|YP_007279859.1| - 0.082 12.2 5.4 1.7 8.0 0.1 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding Zn-ribbon_8 PF09723.5 gi|433590363|ref|YP_007279859.1| - 0.091 12.7 2.7 5.6 6.9 0.1 2.2 2 0 0 2 2 2 0 Zinc ribbon domain DUF2752 PF10825.3 gi|433590363|ref|YP_007279859.1| - 0.096 12.7 3.4 0.31 11.0 0.2 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2752) zf-ISL3 PF14690.1 gi|433590363|ref|YP_007279859.1| - 0.099 12.6 6.3 1.6 8.7 0.5 2.5 2 1 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-HYPF PF07503.7 gi|433590363|ref|YP_007279859.1| - 0.12 11.7 5.6 0.35 10.3 0.6 2.3 2 0 0 2 2 2 0 HypF finger OrfB_Zn_ribbon PF07282.6 gi|433590363|ref|YP_007279859.1| - 0.14 11.8 2.0 5.5 6.7 0.1 2.1 1 1 0 2 2 2 0 Putative transposase DNA-binding domain GFA PF04828.9 gi|433590363|ref|YP_007279859.1| - 0.15 12.0 2.7 2.3 8.2 0.1 2.0 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme zf-IS66 PF13005.2 gi|433590363|ref|YP_007279859.1| - 0.23 11.4 6.3 0.25 11.3 0.2 2.2 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 DUF1936 PF09151.5 gi|433590363|ref|YP_007279859.1| - 0.26 10.8 2.3 3.4 7.2 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1936) Lar_restr_allev PF14354.1 gi|433590363|ref|YP_007279859.1| - 0.28 11.5 3.2 1.5 9.1 2.2 1.9 1 1 0 1 1 1 0 Restriction alleviation protein Lar A2L_zn_ribbon PF08792.5 gi|433590363|ref|YP_007279859.1| - 0.32 10.5 2.4 13 5.3 0.0 2.3 2 0 0 2 2 2 0 A2L zinc ribbon domain zf-C4_Topoisom PF01396.14 gi|433590363|ref|YP_007279859.1| - 0.32 10.5 3.4 7.3 6.1 0.1 2.3 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zf-TFIIB PF13453.1 gi|433590363|ref|YP_007279859.1| - 0.38 9.9 4.5 2.2 7.5 3.1 2.0 1 1 0 1 1 1 0 Transcription factor zinc-finger zf-C2H2_3 PF13878.1 gi|433590363|ref|YP_007279859.1| - 0.61 9.7 2.1 11 5.7 0.1 2.2 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO zf-tcix PF14952.1 gi|433590363|ref|YP_007279859.1| - 0.72 9.2 5.1 4.3 6.7 0.1 2.3 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding Prok-RING_1 PF14446.1 gi|433590363|ref|YP_007279859.1| - 1.6 8.5 4.8 15 5.3 0.1 2.1 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 YhfH PF14149.1 gi|433590363|ref|YP_007279859.1| - 2.6 7.8 6.9 1.4 8.7 0.2 2.1 2 0 0 2 2 2 0 YhfH-like protein Ogr_Delta PF04606.7 gi|433590363|ref|YP_007279859.1| - 5.8 6.6 6.7 3.4 7.3 0.1 2.2 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger Virul_fac_BrkB PF03631.10 gi|433590364|ref|YP_007279860.1| - 7.7e-42 143.4 25.8 7.7e-42 143.4 17.9 2.0 2 0 0 2 2 2 1 Virulence factor BrkB Cast PF10174.4 gi|433590364|ref|YP_007279860.1| - 0.067 11.2 4.2 0.09 10.8 2.9 1.0 1 0 0 1 1 1 0 RIM-binding protein of the cytomatrix active zone Abhydrolase_6 PF12697.2 gi|433590365|ref|YP_007279861.1| - 1.1e-34 120.2 1.5 1.3e-34 120.0 1.1 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|433590365|ref|YP_007279861.1| - 2.9e-19 69.2 0.1 3.9e-19 68.8 0.1 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|433590365|ref|YP_007279861.1| - 2.5e-17 63.2 0.0 1.5e-14 54.1 0.0 2.1 1 1 0 1 1 1 1 alpha/beta hydrolase fold UPF0227 PF05728.7 gi|433590365|ref|YP_007279861.1| - 9e-05 22.2 0.0 0.00029 20.6 0.0 1.7 2 0 0 2 2 2 1 Uncharacterised protein family (UPF0227) Esterase PF00756.15 gi|433590365|ref|YP_007279861.1| - 0.00084 18.8 0.0 0.0013 18.2 0.0 1.3 1 0 0 1 1 1 1 Putative esterase Ndr PF03096.9 gi|433590365|ref|YP_007279861.1| - 0.037 12.4 0.0 0.049 12.1 0.0 1.2 1 0 0 1 1 1 0 Ndr family Ser_hydrolase PF06821.8 gi|433590365|ref|YP_007279861.1| - 0.076 12.6 0.0 2.5 7.6 0.0 2.1 2 0 0 2 2 2 0 Serine hydrolase DCD PF06559.6 gi|433590367|ref|YP_007279863.1| - 3.1e-15 55.4 0.0 4.7e-14 51.5 0.0 1.9 1 1 0 1 1 1 1 2'-deoxycytidine 5'-triphosphate deaminase (DCD) dUTPase PF00692.14 gi|433590367|ref|YP_007279863.1| - 8.2e-15 54.4 0.0 1.3e-14 53.7 0.0 1.3 1 0 0 1 1 1 1 dUTPase PTH2 PF01981.11 gi|433590369|ref|YP_007279865.1| - 7.5e-41 138.4 0.1 8.3e-41 138.3 0.0 1.0 1 0 0 1 1 1 1 Peptidyl-tRNA hydrolase PTH2 DUF3562 PF12085.3 gi|433590369|ref|YP_007279865.1| - 0.13 12.1 0.0 0.34 10.7 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3562) EamA PF00892.15 gi|433590370|ref|YP_007279866.1| - 3.8e-34 117.4 29.2 2.4e-19 69.6 6.4 2.1 2 0 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|433590370|ref|YP_007279866.1| - 8.4e-10 38.8 2.9 8.4e-10 38.8 2.0 3.6 1 1 3 4 4 4 2 Multidrug resistance efflux transporter TPT PF03151.11 gi|433590370|ref|YP_007279866.1| - 0.0013 18.4 16.1 0.0058 16.2 0.9 2.9 2 2 0 2 2 2 2 Triose-phosphate Transporter family Nuc_sug_transp PF04142.10 gi|433590370|ref|YP_007279866.1| - 0.031 13.3 0.0 0.071 12.2 0.0 1.5 1 0 0 1 1 1 0 Nucleotide-sugar transporter HTH_IclR PF09339.5 gi|433590371|ref|YP_007279867.1| - 0.00016 21.2 0.1 0.00046 19.7 0.1 1.9 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_5 PF01022.15 gi|433590371|ref|YP_007279867.1| - 0.0011 18.6 0.0 0.0024 17.5 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|433590371|ref|YP_007279867.1| - 0.0018 17.6 0.0 0.0038 16.5 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|433590371|ref|YP_007279867.1| - 0.0019 17.8 0.1 0.0053 16.3 0.1 1.9 1 1 0 1 1 1 1 MarR family Trp_repressor PF01371.14 gi|433590371|ref|YP_007279867.1| - 0.0024 17.7 0.1 0.012 15.4 0.0 2.0 2 0 0 2 2 2 1 Trp repressor protein HTH_7 PF02796.10 gi|433590371|ref|YP_007279867.1| - 0.032 14.1 0.0 0.074 12.9 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_23 PF13384.1 gi|433590371|ref|YP_007279867.1| - 0.034 13.7 0.6 0.075 12.7 0.0 1.9 2 0 0 2 2 2 0 Homeodomain-like domain Crp PF00325.15 gi|433590371|ref|YP_007279867.1| - 0.043 13.2 0.2 0.14 11.6 0.2 1.9 1 0 0 1 1 1 0 Bacterial regulatory proteins, crp family HTH_20 PF12840.2 gi|433590371|ref|YP_007279867.1| - 0.043 13.6 1.9 0.22 11.3 0.1 2.7 3 0 0 3 3 3 0 Helix-turn-helix domain HTH_27 PF13463.1 gi|433590371|ref|YP_007279867.1| - 0.057 13.7 0.1 0.18 12.1 0.1 1.9 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF1724 PF08350.5 gi|433590371|ref|YP_007279867.1| - 0.091 12.3 0.0 0.15 11.5 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1724) TrmB PF01978.14 gi|433590371|ref|YP_007279867.1| - 0.11 12.2 0.0 0.23 11.1 0.0 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_29 PF13551.1 gi|433590371|ref|YP_007279867.1| - 0.12 12.5 0.4 0.37 10.9 0.0 2.0 2 0 0 2 2 2 0 Winged helix-turn helix HTH_28 PF13518.1 gi|433590371|ref|YP_007279867.1| - 0.13 12.2 0.0 0.33 10.9 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain LRV PF01816.12 gi|433590371|ref|YP_007279867.1| - 1.2 9.4 6.4 0.84 9.9 0.1 3.7 3 0 0 3 3 3 0 Leucine rich repeat variant Spermine_synth PF01564.12 gi|433590372|ref|YP_007279868.1| - 8.2e-10 38.0 0.3 1.3e-09 37.3 0.2 1.2 1 0 0 1 1 1 1 Spermine/spermidine synthase Methyltransf_18 PF12847.2 gi|433590372|ref|YP_007279868.1| - 0.0064 17.0 0.1 0.02 15.4 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|433590372|ref|YP_007279868.1| - 0.039 13.9 0.0 0.091 12.7 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain CMAS PF02353.15 gi|433590372|ref|YP_007279868.1| - 0.13 11.3 0.0 0.2 10.7 0.0 1.1 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase DUF4203 PF13886.1 gi|433590372|ref|YP_007279868.1| - 0.58 9.5 10.2 0.015 14.7 2.4 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4203) Polyketide_cyc PF03364.15 gi|433590373|ref|YP_007279869.1| - 0.13 12.2 0.2 0.19 11.7 0.1 1.3 1 1 0 1 1 1 0 Polyketide cyclase / dehydrase and lipid transport MMR_HSR1_C PF08438.5 gi|433590375|ref|YP_007279871.1| - 5.5e-33 113.4 0.0 1.1e-32 112.5 0.0 1.5 1 0 0 1 1 1 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.18 gi|433590375|ref|YP_007279871.1| - 2.4e-18 66.2 0.0 2.2e-17 63.0 0.0 2.2 1 1 0 1 1 1 1 50S ribosome-binding GTPase TGS PF02824.16 gi|433590375|ref|YP_007279871.1| - 8.3e-09 35.1 0.0 1.9e-08 33.9 0.0 1.6 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.13 gi|433590375|ref|YP_007279871.1| - 1.6e-06 27.4 0.0 0.00042 19.6 0.0 2.5 3 0 0 3 3 3 2 Ferrous iron transport protein B Dynamin_N PF00350.18 gi|433590375|ref|YP_007279871.1| - 0.046 13.5 0.4 0.4 10.4 0.0 2.5 3 1 0 3 3 3 0 Dynamin family Miro PF08477.8 gi|433590375|ref|YP_007279871.1| - 0.047 14.1 0.0 0.22 11.9 0.0 2.2 2 1 0 2 2 2 0 Miro-like protein GTP_EFTU PF00009.22 gi|433590375|ref|YP_007279871.1| - 0.06 12.7 0.0 0.14 11.5 0.0 1.6 1 0 0 1 1 1 0 Elongation factor Tu GTP binding domain ArsA_ATPase PF02374.10 gi|433590376|ref|YP_007279872.1| - 5e-70 235.9 0.0 5.8e-70 235.7 0.0 1.0 1 0 0 1 1 1 1 Anion-transporting ATPase CbiA PF01656.18 gi|433590376|ref|YP_007279872.1| - 3.9e-15 55.7 0.0 8e-15 54.7 0.0 1.5 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|433590376|ref|YP_007279872.1| - 6.6e-07 29.3 0.0 1.1e-05 25.4 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|433590376|ref|YP_007279872.1| - 0.0032 16.9 0.5 0.021 14.2 0.4 2.1 1 1 0 1 1 1 1 AAA domain Fer4_NifH PF00142.13 gi|433590376|ref|YP_007279872.1| - 0.0039 16.4 0.0 0.0078 15.4 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family IstB_IS21 PF01695.12 gi|433590376|ref|YP_007279872.1| - 0.0083 15.5 0.1 0.015 14.7 0.1 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein ArgK PF03308.11 gi|433590376|ref|YP_007279872.1| - 0.0084 14.9 0.0 0.13 10.9 0.1 2.1 2 0 0 2 2 2 1 ArgK protein AAA_10 PF12846.2 gi|433590376|ref|YP_007279872.1| - 0.014 14.8 0.0 0.025 14.0 0.0 1.4 1 1 0 1 1 1 0 AAA-like domain AAA_26 PF13500.1 gi|433590376|ref|YP_007279872.1| - 0.035 13.6 0.1 0.19 11.2 0.0 2.0 2 0 0 2 2 2 0 AAA domain PhoH PF02562.11 gi|433590376|ref|YP_007279872.1| - 0.15 11.2 0.1 0.31 10.2 0.0 1.5 1 1 0 1 1 1 0 PhoH-like protein AAA_19 PF13245.1 gi|433590376|ref|YP_007279872.1| - 0.17 11.6 1.0 0.9 9.3 0.1 2.4 2 0 0 2 2 2 0 Part of AAA domain AAA_24 PF13479.1 gi|433590376|ref|YP_007279872.1| - 0.17 11.4 0.2 0.43 10.1 0.1 1.6 1 1 0 1 1 1 0 AAA domain Cytochrom_B559a PF00284.15 gi|433590377|ref|YP_007279873.1| - 0.011 15.1 0.1 0.024 14.1 0.1 1.5 1 0 0 1 1 1 0 Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit cobW PF02492.14 gi|433590378|ref|YP_007279874.1| - 8.6e-48 162.1 0.1 1.1e-47 161.8 0.1 1.1 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain CobW_C PF07683.9 gi|433590378|ref|YP_007279874.1| - 1.1e-26 92.4 0.0 2.1e-26 91.4 0.0 1.5 1 0 0 1 1 1 1 Cobalamin synthesis protein cobW C-terminal domain GTP_EFTU PF00009.22 gi|433590378|ref|YP_007279874.1| - 0.00022 20.6 0.0 0.73 9.2 0.0 2.7 3 0 0 3 3 3 2 Elongation factor Tu GTP binding domain T2SE PF00437.15 gi|433590378|ref|YP_007279874.1| - 0.0028 16.5 0.0 0.0053 15.7 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein UPF0079 PF02367.12 gi|433590378|ref|YP_007279874.1| - 0.0034 16.9 0.0 0.0093 15.5 0.0 1.7 1 0 0 1 1 1 1 Uncharacterised P-loop hydrolase UPF0079 DUF258 PF03193.11 gi|433590378|ref|YP_007279874.1| - 0.0036 16.4 0.1 0.009 15.2 0.1 1.6 1 1 0 1 1 1 1 Protein of unknown function, DUF258 AAA_19 PF13245.1 gi|433590378|ref|YP_007279874.1| - 0.0051 16.5 0.1 0.011 15.4 0.1 1.6 1 0 0 1 1 1 1 Part of AAA domain MMR_HSR1 PF01926.18 gi|433590378|ref|YP_007279874.1| - 0.0079 16.1 0.0 0.064 13.2 0.0 2.3 2 1 0 2 2 1 1 50S ribosome-binding GTPase CbiA PF01656.18 gi|433590378|ref|YP_007279874.1| - 0.0095 15.3 0.1 0.02 14.3 0.1 1.5 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain TrwB_AAD_bind PF10412.4 gi|433590378|ref|YP_007279874.1| - 0.011 14.3 0.0 0.018 13.6 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain Zeta_toxin PF06414.7 gi|433590378|ref|YP_007279874.1| - 0.015 14.4 0.0 0.029 13.4 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin Arch_ATPase PF01637.13 gi|433590378|ref|YP_007279874.1| - 0.016 14.9 0.0 0.023 14.3 0.0 1.2 1 0 0 1 1 1 0 Archaeal ATPase AAA_22 PF13401.1 gi|433590378|ref|YP_007279874.1| - 0.029 14.4 0.0 0.059 13.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|433590378|ref|YP_007279874.1| - 0.031 14.2 0.5 0.12 12.3 0.1 2.0 2 1 0 2 2 1 0 AAA ATPase domain AAA_10 PF12846.2 gi|433590378|ref|YP_007279874.1| - 0.074 12.4 0.0 0.11 11.8 0.0 1.4 1 0 0 1 1 1 0 AAA-like domain AAA_30 PF13604.1 gi|433590378|ref|YP_007279874.1| - 0.077 12.5 0.1 0.14 11.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|433590378|ref|YP_007279874.1| - 0.093 12.3 0.0 0.18 11.4 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_18 PF13238.1 gi|433590378|ref|YP_007279874.1| - 0.094 13.0 0.0 0.19 12.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|433590378|ref|YP_007279874.1| - 0.11 12.3 0.0 0.23 11.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|433590378|ref|YP_007279874.1| - 0.11 12.0 0.2 0.22 11.0 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_14 PF13173.1 gi|433590378|ref|YP_007279874.1| - 0.13 12.1 0.0 0.24 11.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|433590378|ref|YP_007279874.1| - 0.16 12.2 0.0 0.29 11.4 0.0 1.4 1 0 0 1 1 1 0 ABC transporter AAA_23 PF13476.1 gi|433590378|ref|YP_007279874.1| - 0.24 11.6 0.3 0.5 10.6 0.1 1.5 2 0 0 2 2 1 0 AAA domain zf-RING_3 PF14369.1 gi|433590379|ref|YP_007279875.1| - 0.00083 19.3 1.4 0.0014 18.5 0.9 1.4 1 0 0 1 1 1 1 zinc-finger Zn-ribbon_8 PF09723.5 gi|433590379|ref|YP_007279875.1| - 0.0022 17.9 0.7 0.0042 17.0 0.5 1.5 1 0 0 1 1 1 1 Zinc ribbon domain YdjO PF14169.1 gi|433590379|ref|YP_007279875.1| - 0.0043 16.4 0.4 0.0055 16.1 0.3 1.2 1 0 0 1 1 1 1 Cold-inducible protein YdjO zinc-ribbons_6 PF07191.7 gi|433590379|ref|YP_007279875.1| - 0.012 15.3 0.3 0.022 14.5 0.2 1.4 1 1 0 1 1 1 0 zinc-ribbons TerY-C PF15616.1 gi|433590379|ref|YP_007279875.1| - 0.028 14.3 1.3 0.031 14.2 0.9 1.1 1 0 0 1 1 1 0 TerY-C metal binding domain DZR PF12773.2 gi|433590379|ref|YP_007279875.1| - 0.035 13.9 0.9 0.056 13.2 0.6 1.4 1 1 0 1 1 1 0 Double zinc ribbon PhnA_Zn_Ribbon PF08274.7 gi|433590379|ref|YP_007279875.1| - 0.036 13.8 1.4 0.43 10.4 0.1 2.2 2 0 0 2 2 2 0 PhnA Zinc-Ribbon TF_Zn_Ribbon PF08271.7 gi|433590379|ref|YP_007279875.1| - 0.071 12.4 3.5 0.45 9.8 0.2 2.2 1 1 1 2 2 2 0 TFIIB zinc-binding Zn_Tnp_IS1595 PF12760.2 gi|433590379|ref|YP_007279875.1| - 0.088 12.6 4.6 0.32 10.8 2.7 2.0 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zf-B_box PF00643.19 gi|433590379|ref|YP_007279875.1| - 0.11 12.4 0.3 8.1 6.4 0.0 2.2 2 0 0 2 2 2 0 B-box zinc finger Zn_ribbon_recom PF13408.1 gi|433590379|ref|YP_007279875.1| - 0.23 11.7 1.1 0.46 10.7 0.1 1.8 1 1 1 2 2 2 0 Recombinase zinc beta ribbon domain HypA PF01155.14 gi|433590379|ref|YP_007279875.1| - 0.32 10.6 2.2 0.37 10.5 1.6 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family DNA_RNApol_7kD PF03604.8 gi|433590379|ref|YP_007279875.1| - 0.35 10.3 2.2 1.8 8.0 1.1 2.1 1 1 1 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit Prim_Zn_Ribbon PF08273.7 gi|433590379|ref|YP_007279875.1| - 0.48 10.5 5.3 3.7 7.7 0.9 2.2 2 0 0 2 2 2 0 Zinc-binding domain of primase-helicase zf-IS66 PF13005.2 gi|433590379|ref|YP_007279875.1| - 7.7 6.5 7.8 1.6 8.7 1.7 2.2 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 MgtC PF02308.11 gi|433590380|ref|YP_007279876.1| - 0.0066 16.2 1.0 0.012 15.4 0.1 1.7 2 0 0 2 2 2 1 MgtC family MFS_1 PF07690.11 gi|433590380|ref|YP_007279876.1| - 0.019 13.7 5.3 0.024 13.3 3.7 1.1 1 0 0 1 1 1 0 Major Facilitator Superfamily DUF4149 PF13664.1 gi|433590380|ref|YP_007279876.1| - 0.14 12.2 6.3 0.045 13.8 1.5 1.8 1 1 1 2 2 2 0 Domain of unknown function (DUF4149) CopD PF05425.8 gi|433590380|ref|YP_007279876.1| - 1.5 9.0 9.6 1.9 8.7 6.7 1.1 1 0 0 1 1 1 0 Copper resistance protein D EmrE PF13536.1 gi|433590380|ref|YP_007279876.1| - 1.7 8.8 7.5 2.8 8.1 5.2 1.3 1 1 0 1 1 1 0 Multidrug resistance efflux transporter DUF4131 PF13567.1 gi|433590380|ref|YP_007279876.1| - 7.8 5.8 7.6 18 4.6 5.3 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4131) FAA_hydrolase PF01557.13 gi|433590383|ref|YP_007279879.1| - 0.067 12.6 0.0 0.084 12.3 0.0 1.2 1 0 0 1 1 1 0 Fumarylacetoacetate (FAA) hydrolase family DUF496 PF04363.7 gi|433590383|ref|YP_007279879.1| - 0.12 12.2 0.0 0.28 11.0 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF496) CstA PF02554.9 gi|433590384|ref|YP_007279880.1| - 1.4e-124 415.5 21.8 1.4e-124 415.5 15.1 1.6 2 0 0 2 2 2 1 Carbon starvation protein CstA DUF4161 PF13722.1 gi|433590384|ref|YP_007279880.1| - 5.2e-31 107.5 2.1 5.2e-31 107.5 1.5 3.9 4 0 0 4 4 4 1 C-terminal domain on CstA (DUF4161) Aminotran_5 PF00266.14 gi|433590385|ref|YP_007279881.1| - 3.2e-25 88.6 0.0 4.1e-25 88.3 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Methyltransf_11 PF08241.7 gi|433590386|ref|YP_007279882.1| - 4.4e-17 62.3 0.0 6.4e-17 61.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|433590386|ref|YP_007279882.1| - 4.8e-14 52.4 0.0 5.8e-14 52.1 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|433590386|ref|YP_007279882.1| - 2.5e-12 47.0 0.0 4.3e-12 46.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|433590386|ref|YP_007279882.1| - 2.1e-11 44.3 0.0 3.4e-11 43.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|433590386|ref|YP_007279882.1| - 7.2e-11 41.9 0.0 8.7e-11 41.6 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|433590386|ref|YP_007279882.1| - 1.4e-08 34.7 0.3 2.2e-08 34.1 0.2 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|433590386|ref|YP_007279882.1| - 1.3e-06 27.7 0.0 1.7e-06 27.3 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_25 PF13649.1 gi|433590386|ref|YP_007279882.1| - 1.5e-06 28.5 0.0 2.2e-06 27.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|433590386|ref|YP_007279882.1| - 0.00084 18.7 0.0 0.0016 17.8 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase small domain MetW PF07021.7 gi|433590386|ref|YP_007279882.1| - 0.01 15.2 0.0 0.016 14.5 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Carb_kinase PF01256.12 gi|433590387|ref|YP_007279883.1| - 2e-35 122.2 0.5 2.4e-35 121.9 0.4 1.1 1 0 0 1 1 1 1 Carbohydrate kinase HK PF02110.10 gi|433590387|ref|YP_007279883.1| - 0.00018 20.8 1.6 0.0048 16.1 0.1 2.1 2 0 0 2 2 2 2 Hydroxyethylthiazole kinase family Pribosyltran PF00156.22 gi|433590388|ref|YP_007279884.1| - 8.6e-28 96.5 0.4 1.2e-27 96.1 0.3 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|433590388|ref|YP_007279884.1| - 0.0021 17.3 0.0 0.0036 16.5 0.0 1.4 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Oxidored_nitro PF00148.14 gi|433590388|ref|YP_007279884.1| - 0.032 12.8 0.0 0.043 12.4 0.0 1.1 1 0 0 1 1 1 0 Nitrogenase component 1 type Oxidoreductase PRTase_2 PF15609.1 gi|433590388|ref|YP_007279884.1| - 0.041 13.1 0.0 0.12 11.6 0.0 1.7 2 0 0 2 2 2 0 Phosphoribosyl transferase ELFV_dehydrog PF00208.16 gi|433590389|ref|YP_007279885.1| - 3.8e-71 239.5 0.0 4.9e-71 239.1 0.0 1.1 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.13 gi|433590389|ref|YP_007279885.1| - 1.9e-51 173.0 0.0 3.5e-51 172.1 0.0 1.4 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.14 gi|433590389|ref|YP_007279885.1| - 0.0017 17.5 0.0 0.003 16.7 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ThiF PF00899.16 gi|433590389|ref|YP_007279885.1| - 0.026 14.3 0.9 0.13 12.0 0.1 2.4 2 0 0 2 2 2 0 ThiF family Mycobact_memb PF05423.8 gi|433590389|ref|YP_007279885.1| - 0.11 12.2 0.0 0.24 11.1 0.0 1.5 1 0 0 1 1 1 0 Mycobacterium membrane protein Thi4 PF01946.12 gi|433590389|ref|YP_007279885.1| - 0.32 10.0 2.2 5.8 5.9 0.1 2.2 2 0 0 2 2 2 0 Thi4 family 3HCDH_N PF02737.13 gi|433590389|ref|YP_007279885.1| - 2.9 7.4 4.5 2.1 7.9 1.3 2.2 2 1 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DZR PF12773.2 gi|433590390|ref|YP_007279886.1| - 8.7e-05 22.2 1.0 9.7e-05 22.1 0.7 1.2 1 0 0 1 1 1 1 Double zinc ribbon DUF1272 PF06906.6 gi|433590390|ref|YP_007279886.1| - 0.00045 20.0 1.4 0.00053 19.7 1.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1272) zinc_ribbon_2 PF13240.1 gi|433590390|ref|YP_007279886.1| - 0.0005 19.4 1.1 0.18 11.3 0.1 2.2 2 0 0 2 2 2 2 zinc-ribbon domain Ogr_Delta PF04606.7 gi|433590390|ref|YP_007279886.1| - 0.00076 19.0 3.4 0.01 15.4 0.7 2.1 2 0 0 2 2 2 1 Ogr/Delta-like zinc finger zf-C4_Topoisom PF01396.14 gi|433590390|ref|YP_007279886.1| - 0.0047 16.4 0.9 0.01 15.2 0.1 1.8 2 0 0 2 2 2 1 Topoisomerase DNA binding C4 zinc finger HypA PF01155.14 gi|433590390|ref|YP_007279886.1| - 0.0053 16.4 1.1 0.0057 16.3 0.8 1.0 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family zf-RING_3 PF14369.1 gi|433590390|ref|YP_007279886.1| - 0.0055 16.6 1.0 0.0087 16.0 0.7 1.3 1 0 0 1 1 1 1 zinc-finger Nudix_N_2 PF14803.1 gi|433590390|ref|YP_007279886.1| - 0.0088 15.7 1.2 1 9.1 0.1 2.1 2 0 0 2 2 2 1 Nudix N-terminal zf-IS66 PF13005.2 gi|433590390|ref|YP_007279886.1| - 0.014 15.3 1.4 0.051 13.5 0.1 2.0 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 OrfB_Zn_ribbon PF07282.6 gi|433590390|ref|YP_007279886.1| - 0.014 15.0 1.5 1.7 8.3 0.1 2.0 1 1 1 2 2 2 0 Putative transposase DNA-binding domain Zn-ribbon_8 PF09723.5 gi|433590390|ref|YP_007279886.1| - 0.019 14.9 6.1 0.1 12.5 4.1 2.0 1 1 0 1 1 1 0 Zinc ribbon domain zf-C2HC5 PF06221.8 gi|433590390|ref|YP_007279886.1| - 0.023 14.4 0.1 0.024 14.3 0.0 1.2 1 0 0 1 1 1 0 Putative zinc finger motif, C2HC5-type zinc-ribbons_6 PF07191.7 gi|433590390|ref|YP_007279886.1| - 0.023 14.4 0.4 0.026 14.3 0.3 1.1 1 0 0 1 1 1 0 zinc-ribbons DNA_RNApol_7kD PF03604.8 gi|433590390|ref|YP_007279886.1| - 0.03 13.7 1.8 0.14 11.6 1.2 2.0 1 1 1 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit NOB1_Zn_bind PF08772.6 gi|433590390|ref|YP_007279886.1| - 0.031 14.0 0.5 0.035 13.9 0.3 1.1 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like zf-ribbon_3 PF13248.1 gi|433590390|ref|YP_007279886.1| - 0.041 13.1 4.5 0.36 10.0 0.5 2.2 1 1 1 2 2 2 0 zinc-ribbon domain RNHCP PF12647.2 gi|433590390|ref|YP_007279886.1| - 0.043 13.6 0.6 0.061 13.1 0.4 1.3 1 0 0 1 1 1 0 RNHCP domain zf-tcix PF14952.1 gi|433590390|ref|YP_007279886.1| - 0.05 12.9 1.6 0.82 9.0 0.2 2.1 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding YhfH PF14149.1 gi|433590390|ref|YP_007279886.1| - 0.051 13.3 2.7 0.99 9.2 0.1 2.2 1 1 1 2 2 2 0 YhfH-like protein Prok-RING_1 PF14446.1 gi|433590390|ref|YP_007279886.1| - 0.076 12.7 1.5 0.11 12.2 1.0 1.3 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 UPF0547 PF10571.4 gi|433590390|ref|YP_007279886.1| - 0.13 11.9 5.7 0.85 9.3 4.1 2.0 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 Prim_Zn_Ribbon PF08273.7 gi|433590390|ref|YP_007279886.1| - 0.16 12.0 4.8 0.79 9.8 0.4 2.1 1 1 1 2 2 2 0 Zinc-binding domain of primase-helicase TFIIS_C PF01096.13 gi|433590390|ref|YP_007279886.1| - 0.16 11.6 1.8 3.8 7.2 0.1 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) A2L_zn_ribbon PF08792.5 gi|433590390|ref|YP_007279886.1| - 0.18 11.3 1.1 8.5 5.9 0.1 2.1 2 0 0 2 2 2 0 A2L zinc ribbon domain Nop10p PF04135.7 gi|433590390|ref|YP_007279886.1| - 0.19 11.4 0.8 8.2 6.2 0.1 2.1 1 1 1 2 2 2 0 Nucleolar RNA-binding protein, Nop10p family TF_Zn_Ribbon PF08271.7 gi|433590390|ref|YP_007279886.1| - 0.31 10.4 6.3 2.8 7.3 0.6 2.1 1 1 1 2 2 2 0 TFIIB zinc-binding zf-ISL3 PF14690.1 gi|433590390|ref|YP_007279886.1| - 0.31 11.0 1.6 0.43 10.6 0.1 1.8 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Rubredoxin PF00301.15 gi|433590390|ref|YP_007279886.1| - 0.39 10.6 5.2 4.5 7.2 2.0 2.4 2 1 0 2 2 2 0 Rubredoxin zf-TFIIB PF13453.1 gi|433590390|ref|YP_007279886.1| - 0.45 9.7 3.1 1.1 8.5 0.5 2.1 2 0 0 2 2 2 0 Transcription factor zinc-finger Zn_Tnp_IS1595 PF12760.2 gi|433590390|ref|YP_007279886.1| - 0.65 9.8 3.4 6 6.7 0.2 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zf-Mss51 PF13824.1 gi|433590390|ref|YP_007279886.1| - 0.95 9.3 3.6 2.8 7.8 0.1 2.1 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-HYPF PF07503.7 gi|433590390|ref|YP_007279886.1| - 2.5 7.5 5.0 1.3 8.5 1.0 2.1 1 1 1 2 2 2 0 HypF finger RRN7 PF11781.3 gi|433590390|ref|YP_007279886.1| - 2.9 7.4 6.1 3.5 7.2 0.5 2.2 1 1 1 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 GAF_2 PF13185.1 gi|433590391|ref|YP_007279887.1| - 2.3e-23 83.2 11.3 1.2e-13 51.8 0.5 3.5 3 0 0 3 3 3 2 GAF domain GAF_3 PF13492.1 gi|433590391|ref|YP_007279887.1| - 2.1e-18 66.6 3.1 1.1e-11 44.8 0.1 2.9 3 0 0 3 3 3 2 GAF domain HTH_10 PF04967.7 gi|433590391|ref|YP_007279887.1| - 5e-16 58.0 0.0 9.6e-16 57.1 0.0 1.5 1 0 0 1 1 1 1 HTH DNA binding domain PAS_9 PF13426.1 gi|433590391|ref|YP_007279887.1| - 2.5e-13 50.2 0.1 4.3e-08 33.4 0.0 3.0 2 0 0 2 2 2 2 PAS domain PAS_4 PF08448.5 gi|433590391|ref|YP_007279887.1| - 1.2e-12 47.7 14.3 6.3e-10 39.0 2.1 5.4 5 2 0 5 5 5 2 PAS fold GAF PF01590.21 gi|433590391|ref|YP_007279887.1| - 3.9e-12 46.5 6.4 3.1e-05 24.1 0.1 3.8 3 1 0 3 3 3 2 GAF domain Response_reg PF00072.19 gi|433590391|ref|YP_007279887.1| - 1.7e-09 37.7 0.0 4.7e-09 36.2 0.0 1.7 1 0 0 1 1 1 1 Response regulator receiver domain PAS PF00989.19 gi|433590391|ref|YP_007279887.1| - 2.1e-05 24.2 0.0 0.11 12.2 0.0 2.8 2 0 0 2 2 2 2 PAS fold PAS_8 PF13188.1 gi|433590391|ref|YP_007279887.1| - 0.0068 16.2 0.0 0.057 13.3 0.0 2.6 3 0 0 3 3 3 1 PAS domain HTH_22 PF13309.1 gi|433590391|ref|YP_007279887.1| - 0.066 12.9 0.0 0.21 11.3 0.0 1.9 1 0 0 1 1 1 0 HTH domain GerE PF00196.14 gi|433590391|ref|YP_007279887.1| - 0.16 11.2 0.0 0.54 9.6 0.0 1.9 1 1 0 1 1 1 0 Bacterial regulatory proteins, luxR family SelR PF01641.13 gi|433590393|ref|YP_007279889.1| - 2.7e-52 175.6 0.1 3e-52 175.5 0.1 1.0 1 0 0 1 1 1 1 SelR domain Yippee-Mis18 PF03226.9 gi|433590393|ref|YP_007279889.1| - 0.0052 16.7 0.1 0.011 15.7 0.1 1.6 1 1 0 1 1 1 1 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly DUF2296 PF10058.4 gi|433590393|ref|YP_007279889.1| - 0.01 15.5 0.3 1.3 8.8 0.0 2.4 2 0 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) DZR PF12773.2 gi|433590393|ref|YP_007279889.1| - 0.013 15.3 2.4 0.17 11.7 1.6 2.3 1 1 0 1 1 1 0 Double zinc ribbon TF_Zn_Ribbon PF08271.7 gi|433590393|ref|YP_007279889.1| - 0.037 13.3 5.0 1.7 7.9 0.7 2.9 2 1 0 2 2 2 0 TFIIB zinc-binding NinF PF05810.7 gi|433590393|ref|YP_007279889.1| - 0.1 12.4 0.1 8 6.3 0.0 2.4 2 0 0 2 2 2 0 NinF protein HNH_5 PF14279.1 gi|433590393|ref|YP_007279889.1| - 0.12 12.4 0.3 0.25 11.3 0.0 1.6 2 0 0 2 2 2 0 HNH endonuclease Zn_Tnp_IS1595 PF12760.2 gi|433590393|ref|YP_007279889.1| - 0.18 11.6 1.4 14 5.6 0.0 2.3 2 0 0 2 2 2 0 Transposase zinc-ribbon domain DNA_RNApol_7kD PF03604.8 gi|433590393|ref|YP_007279889.1| - 0.23 10.9 1.8 4.2 6.9 0.1 2.5 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zinc_ribbon_2 PF13240.1 gi|433590393|ref|YP_007279889.1| - 0.26 10.8 2.0 14 5.3 0.2 2.5 2 0 0 2 2 2 0 zinc-ribbon domain Lar_restr_allev PF14354.1 gi|433590393|ref|YP_007279889.1| - 0.44 10.8 2.9 6 7.2 2.0 2.3 1 1 0 1 1 1 0 Restriction alleviation protein Lar RRN7 PF11781.3 gi|433590393|ref|YP_007279889.1| - 0.79 9.2 8.5 1.3 8.5 0.3 2.8 2 1 0 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 Ribosomal_L37e PF01907.14 gi|433590393|ref|YP_007279889.1| - 0.93 9.3 3.3 2.8 7.7 0.1 2.2 2 0 0 2 2 2 0 Ribosomal protein L37e zf-ribbon_3 PF13248.1 gi|433590393|ref|YP_007279889.1| - 1.1 8.5 6.0 8.6 5.7 1.3 2.6 2 1 0 2 2 2 0 zinc-ribbon domain Prim_Zn_Ribbon PF08273.7 gi|433590393|ref|YP_007279889.1| - 1.4 9.0 7.4 4.3 7.5 0.7 2.5 2 1 0 2 2 2 0 Zinc-binding domain of primase-helicase HypA PF01155.14 gi|433590394|ref|YP_007279890.1| - 0.011 15.3 0.3 0.012 15.2 0.2 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zinc_ribbon_5 PF13719.1 gi|433590394|ref|YP_007279890.1| - 0.011 15.2 2.7 0.22 11.1 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain RNA_POL_M_15KD PF02150.11 gi|433590394|ref|YP_007279890.1| - 0.014 15.0 0.5 0.37 10.5 0.0 2.1 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit zinc_ribbon_4 PF13717.1 gi|433590394|ref|YP_007279890.1| - 0.015 15.0 2.8 0.27 10.9 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain DZR PF12773.2 gi|433590394|ref|YP_007279890.1| - 0.02 14.6 1.4 0.032 14.0 1.0 1.4 1 1 0 1 1 1 0 Double zinc ribbon TF_Zn_Ribbon PF08271.7 gi|433590394|ref|YP_007279890.1| - 0.023 14.0 2.7 0.65 9.3 0.1 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding zf-ribbon_3 PF13248.1 gi|433590394|ref|YP_007279890.1| - 0.04 13.1 0.7 1.1 8.5 0.1 2.0 2 0 0 2 2 2 0 zinc-ribbon domain A2L_zn_ribbon PF08792.5 gi|433590394|ref|YP_007279890.1| - 0.094 12.1 1.1 5.9 6.4 0.1 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain Zn_Tnp_IS1 PF03811.8 gi|433590394|ref|YP_007279890.1| - 0.1 12.0 6.1 0.19 11.2 0.2 2.2 2 0 0 2 2 2 0 InsA N-terminal domain TFIIS_C PF01096.13 gi|433590394|ref|YP_007279890.1| - 0.13 11.9 0.8 3.9 7.1 0.1 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Zn_Tnp_IS1595 PF12760.2 gi|433590394|ref|YP_007279890.1| - 0.17 11.7 1.7 11 5.9 0.0 2.1 2 0 0 2 2 2 0 Transposase zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|433590394|ref|YP_007279890.1| - 0.61 10.0 6.0 14 5.6 4.2 2.1 1 1 0 1 1 1 0 Zinc ribbon domain OrfB_Zn_ribbon PF07282.6 gi|433590394|ref|YP_007279890.1| - 1.1 9.0 3.7 4.8 6.9 0.3 2.0 1 1 1 2 2 2 0 Putative transposase DNA-binding domain UPF0547 PF10571.4 gi|433590394|ref|YP_007279890.1| - 1.7 8.3 5.7 11 5.8 0.2 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 HTH_10 PF04967.7 gi|433590395|ref|YP_007279891.1| - 9.3e-21 73.1 0.0 2e-20 72.0 0.0 1.6 1 0 0 1 1 1 1 HTH DNA binding domain GAF_2 PF13185.1 gi|433590395|ref|YP_007279891.1| - 7.4e-11 42.7 2.6 1.3e-10 41.9 0.5 2.5 3 1 0 3 3 2 1 GAF domain GAF_3 PF13492.1 gi|433590395|ref|YP_007279891.1| - 1.7e-08 34.6 0.6 4.8e-07 29.9 0.0 2.8 3 0 0 3 3 3 1 GAF domain PAS_4 PF08448.5 gi|433590395|ref|YP_007279891.1| - 5.7e-08 32.7 3.2 5.5e-07 29.6 0.2 3.4 3 0 0 3 3 3 1 PAS fold GAF PF01590.21 gi|433590395|ref|YP_007279891.1| - 1.2e-05 25.4 0.2 3.7e-05 23.8 0.2 1.9 1 0 0 1 1 1 1 GAF domain PAS_9 PF13426.1 gi|433590395|ref|YP_007279891.1| - 0.0012 19.2 0.0 0.0039 17.5 0.0 2.0 1 0 0 1 1 1 1 PAS domain HTH_11 PF08279.7 gi|433590395|ref|YP_007279891.1| - 0.0034 16.9 0.0 0.008 15.8 0.0 1.6 1 0 0 1 1 1 1 HTH domain Sigma70_r4 PF04545.11 gi|433590395|ref|YP_007279891.1| - 0.0035 16.5 0.0 0.016 14.4 0.0 2.2 1 0 0 1 1 1 1 Sigma-70, region 4 UPF0122 PF04297.9 gi|433590395|ref|YP_007279891.1| - 0.019 14.9 0.3 0.069 13.1 0.0 1.9 2 0 0 2 2 2 0 Putative helix-turn-helix protein, YlxM / p13 like DUF134 PF02001.11 gi|433590395|ref|YP_007279891.1| - 0.039 13.8 0.0 0.1 12.4 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function DUF134 PAS PF00989.19 gi|433590395|ref|YP_007279891.1| - 0.041 13.6 0.3 0.18 11.6 0.0 2.3 3 0 0 3 3 3 0 PAS fold GerE PF00196.14 gi|433590395|ref|YP_007279891.1| - 0.22 10.8 1.2 3.2 7.1 0.0 3.1 4 0 0 4 4 4 0 Bacterial regulatory proteins, luxR family SQS_PSY PF00494.14 gi|433590396|ref|YP_007279892.1| - 2.7e-64 217.0 7.9 3.3e-64 216.7 5.5 1.0 1 0 0 1 1 1 1 Squalene/phytoene synthase LTXXQ PF07813.7 gi|433590396|ref|YP_007279892.1| - 0.12 12.8 1.6 11 6.6 0.1 2.4 2 0 0 2 2 2 0 LTXXQ motif family protein SKG6 PF08693.5 gi|433590397|ref|YP_007279893.1| - 0.025 13.8 0.7 0.04 13.2 0.5 1.3 1 0 0 1 1 1 0 Transmembrane alpha-helix domain DUF1184 PF06683.6 gi|433590397|ref|YP_007279893.1| - 0.12 11.9 0.0 0.12 11.9 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1184) zf-Di19 PF05605.7 gi|433590398|ref|YP_007279894.1| - 0.014 15.5 0.1 0.017 15.2 0.1 1.2 1 0 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding DUF422 PF04240.7 gi|433590399|ref|YP_007279895.1| - 5e-71 238.5 15.6 6.8e-71 238.0 10.8 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF422) UbiA PF01040.13 gi|433590400|ref|YP_007279896.1| - 1.4e-28 99.8 24.7 1.8e-28 99.4 17.2 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family Amino_oxidase PF01593.19 gi|433590401|ref|YP_007279897.1| - 8.5e-24 84.4 0.2 2.6e-23 82.8 0.1 1.7 1 1 0 1 1 1 1 Flavin containing amine oxidoreductase DAO PF01266.19 gi|433590401|ref|YP_007279897.1| - 1.5e-16 60.2 0.0 2.7e-08 33.1 0.0 2.6 2 1 0 2 2 2 2 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|433590401|ref|YP_007279897.1| - 3.4e-16 59.0 0.0 9.9e-16 57.5 0.0 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.22 gi|433590401|ref|YP_007279897.1| - 3.8e-07 30.4 1.8 2.7e-05 24.4 0.1 3.4 3 1 1 4 4 3 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|433590401|ref|YP_007279897.1| - 1.2e-06 27.6 1.1 2.1e-06 26.8 0.8 1.3 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.9 gi|433590401|ref|YP_007279897.1| - 6.4e-06 26.1 0.0 1.4e-05 25.1 0.0 1.7 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|433590401|ref|YP_007279897.1| - 4.2e-05 23.6 0.0 0.0035 17.4 0.0 2.8 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|433590401|ref|YP_007279897.1| - 4.5e-05 22.6 0.3 7.3e-05 21.9 0.2 1.2 1 0 0 1 1 1 1 FAD binding domain FAD_oxidored PF12831.2 gi|433590401|ref|YP_007279897.1| - 6e-05 22.3 0.0 0.00048 19.3 0.0 2.0 2 0 0 2 2 2 1 FAD dependent oxidoreductase Thi4 PF01946.12 gi|433590401|ref|YP_007279897.1| - 0.00068 18.7 0.4 0.0011 18.1 0.3 1.3 1 0 0 1 1 1 1 Thi4 family HI0933_like PF03486.9 gi|433590401|ref|YP_007279897.1| - 0.0011 17.5 0.6 0.0024 16.4 0.3 1.6 2 0 0 2 2 2 1 HI0933-like protein Strep_67kDa_ant PF06100.6 gi|433590401|ref|YP_007279897.1| - 0.0029 16.0 0.0 0.0039 15.6 0.0 1.1 1 0 0 1 1 1 1 Streptococcal 67 kDa myosin-cross-reactive antigen like family 3HCDH_N PF02737.13 gi|433590401|ref|YP_007279897.1| - 0.034 13.8 0.1 0.056 13.0 0.1 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GIDA PF01134.17 gi|433590401|ref|YP_007279897.1| - 0.041 12.7 0.4 0.062 12.1 0.3 1.2 1 0 0 1 1 1 0 Glucose inhibited division protein A IlvN PF07991.7 gi|433590401|ref|YP_007279897.1| - 0.051 12.9 0.1 0.093 12.0 0.1 1.4 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain NAD_binding_7 PF13241.1 gi|433590401|ref|YP_007279897.1| - 0.058 13.6 0.0 0.098 12.9 0.0 1.3 1 0 0 1 1 1 0 Putative NAD(P)-binding ApbA PF02558.11 gi|433590401|ref|YP_007279897.1| - 0.075 12.4 0.1 0.12 11.7 0.0 1.3 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA NAD_Gly3P_dh_N PF01210.18 gi|433590401|ref|YP_007279897.1| - 0.09 12.5 0.1 0.14 11.9 0.0 1.2 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus adh_short PF00106.20 gi|433590402|ref|YP_007279898.1| - 4e-22 78.8 5.0 4.9e-22 78.6 3.4 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|433590402|ref|YP_007279898.1| - 3e-13 50.0 0.0 4e-13 49.7 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|433590402|ref|YP_007279898.1| - 5.4e-10 39.2 3.8 9e-10 38.5 2.6 1.4 1 1 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|433590402|ref|YP_007279898.1| - 3.3e-07 30.0 0.1 0.00025 20.5 0.2 2.1 2 0 0 2 2 2 2 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.1 gi|433590402|ref|YP_007279898.1| - 0.43 10.5 5.2 2 8.4 3.6 2.1 1 1 0 1 1 1 0 NADH(P)-binding Cys_rich_CPXG PF14255.1 gi|433590403|ref|YP_007279899.1| - 0.0046 16.7 0.1 0.0086 15.8 0.0 1.6 2 0 0 2 2 2 1 Cysteine-rich CPXCG zf-ribbon_3 PF13248.1 gi|433590403|ref|YP_007279899.1| - 0.0078 15.3 0.6 0.015 14.4 0.0 1.9 2 0 0 2 2 2 1 zinc-ribbon domain UPF0547 PF10571.4 gi|433590403|ref|YP_007279899.1| - 0.019 14.6 0.4 0.036 13.7 0.2 1.5 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 TerY-C PF15616.1 gi|433590403|ref|YP_007279899.1| - 0.047 13.6 0.2 0.088 12.7 0.0 1.5 1 1 0 1 1 1 0 TerY-C metal binding domain zinc_ribbon_2 PF13240.1 gi|433590403|ref|YP_007279899.1| - 0.054 12.9 0.5 0.093 12.2 0.1 1.7 2 0 0 2 2 2 0 zinc-ribbon domain Ogr_Delta PF04606.7 gi|433590403|ref|YP_007279899.1| - 0.059 13.0 0.9 0.086 12.5 0.6 1.6 1 1 0 1 1 1 0 Ogr/Delta-like zinc finger Zn_Tnp_IS1595 PF12760.2 gi|433590403|ref|YP_007279899.1| - 0.063 13.0 0.4 0.07 12.9 0.3 1.4 1 1 0 1 1 1 0 Transposase zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|433590403|ref|YP_007279899.1| - 0.071 12.7 0.1 0.4 10.3 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|433590403|ref|YP_007279899.1| - 0.072 13.0 0.2 0.32 10.9 0.1 1.9 2 0 0 2 2 2 0 Zinc ribbon domain CpXC PF14353.1 gi|433590403|ref|YP_007279899.1| - 0.078 12.9 0.1 0.088 12.7 0.1 1.3 1 1 0 1 1 1 0 CpXC protein T4_baseplate PF12322.3 gi|433590403|ref|YP_007279899.1| - 0.094 11.9 0.0 0.1 11.8 0.0 1.2 1 0 0 1 1 1 0 T4 bacteriophage base plate protein DZR PF12773.2 gi|433590403|ref|YP_007279899.1| - 0.1 12.4 0.3 0.12 12.2 0.2 1.3 1 1 0 1 1 1 0 Double zinc ribbon zf-TFIIIC PF12660.2 gi|433590403|ref|YP_007279899.1| - 0.11 12.4 1.1 0.47 10.3 0.7 1.8 1 1 1 2 2 2 0 Putative zinc-finger of transcription factor IIIC complex zinc_ribbon_4 PF13717.1 gi|433590403|ref|YP_007279899.1| - 0.13 11.9 0.5 0.93 9.2 0.2 2.1 2 1 0 2 2 2 0 zinc-ribbon domain zf-Di19 PF05605.7 gi|433590403|ref|YP_007279899.1| - 0.15 12.2 0.8 0.2 11.8 0.5 1.6 1 1 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding Lar_restr_allev PF14354.1 gi|433590403|ref|YP_007279899.1| - 0.15 12.4 1.4 0.18 12.1 0.9 1.3 1 1 0 1 1 1 0 Restriction alleviation protein Lar eIF-1a PF01176.14 gi|433590404|ref|YP_007279900.1| - 2.9e-22 77.8 0.1 3.3e-22 77.6 0.1 1.1 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 CxxCxxCC PF03692.10 gi|433590405|ref|YP_007279901.1| - 2.6e-06 27.7 1.8 4.5e-06 27.0 1.2 1.4 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain FAA_hydrolase PF01557.13 gi|433590406|ref|YP_007279902.1| - 7.8e-50 169.3 0.0 9.6e-50 169.0 0.0 1.0 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family PRC PF05239.11 gi|433590407|ref|YP_007279903.1| - 0.06 13.2 1.1 0.087 12.7 0.8 1.5 1 1 0 1 1 1 0 PRC-barrel domain DDE_Tnp_1 PF01609.16 gi|433590409|ref|YP_007279905.1| - 1.5e-14 54.0 0.0 2.1e-14 53.5 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.6 gi|433590409|ref|YP_007279905.1| - 0.0027 17.5 0.0 0.0054 16.5 0.0 1.5 1 0 0 1 1 1 1 Transposase domain (DUF772) TipAS PF07739.8 gi|433590410|ref|YP_007279906.1| - 0.029 14.7 0.1 0.042 14.1 0.1 1.2 1 0 0 1 1 1 0 TipAS antibiotic-recognition domain MamL-1 PF09596.5 gi|433590410|ref|YP_007279906.1| - 1.2 8.9 0.1 1.2 8.9 0.1 2.2 2 1 0 2 2 2 0 MamL-1 domain CbiZ PF01955.13 gi|433590412|ref|YP_007279908.1| - 3.4e-40 137.8 0.3 4.4e-40 137.5 0.2 1.2 1 0 0 1 1 1 1 Adenosylcobinamide amidohydrolase Aminotran_1_2 PF00155.16 gi|433590413|ref|YP_007279909.1| - 1.1e-36 126.5 0.0 1.3e-36 126.3 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.15 gi|433590413|ref|YP_007279909.1| - 0.002 16.4 0.0 0.0029 15.9 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.16 gi|433590413|ref|YP_007279909.1| - 0.03 13.4 0.0 0.12 11.4 0.0 1.9 1 1 0 1 1 1 0 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.12 gi|433590413|ref|YP_007279909.1| - 0.082 11.9 0.0 0.14 11.1 0.0 1.3 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family DBI_PRT PF02277.12 gi|433590414|ref|YP_007279910.1| - 1.6e-18 66.9 3.6 2.3e-18 66.3 2.0 1.5 1 1 0 1 1 1 1 Phosphoribosyltransferase NTP_transf_3 PF12804.2 gi|433590415|ref|YP_007279911.1| - 1.9e-17 63.7 0.1 2.4e-17 63.4 0.1 1.2 1 1 0 1 1 1 1 MobA-like NTP transferase domain NTP_transferase PF00483.18 gi|433590415|ref|YP_007279911.1| - 0.0012 18.2 0.0 0.0015 17.8 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase IspD PF01128.14 gi|433590415|ref|YP_007279911.1| - 0.0018 17.8 0.0 0.0025 17.3 0.0 1.3 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CTP_transf_3 PF02348.14 gi|433590415|ref|YP_007279911.1| - 0.027 14.1 0.0 0.17 11.4 0.0 2.0 1 1 0 1 1 1 0 Cytidylyltransferase CobS PF02654.10 gi|433590416|ref|YP_007279912.1| - 5e-36 124.4 12.2 6.1e-36 124.1 8.5 1.0 1 0 0 1 1 1 1 Cobalamin-5-phosphate synthase CobD_Cbib PF03186.8 gi|433590417|ref|YP_007279913.1| - 1.4e-73 247.5 12.1 1.8e-73 247.1 8.4 1.2 1 0 0 1 1 1 1 CobD/Cbib protein HAD_2 PF13419.1 gi|433590418|ref|YP_007279914.1| - 1.3e-19 71.0 0.0 1.7e-19 70.6 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|433590418|ref|YP_007279914.1| - 2.1e-07 31.5 0.1 1.5e-06 28.8 0.0 1.9 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|433590418|ref|YP_007279914.1| - 0.00076 19.1 0.1 0.002 17.7 0.0 1.7 2 0 0 2 2 2 1 HAD-hyrolase-like Hydrolase_6 PF13344.1 gi|433590418|ref|YP_007279914.1| - 0.15 12.0 0.0 4.9 7.0 0.0 2.2 2 0 0 2 2 2 0 Haloacid dehalogenase-like hydrolase MarR PF01047.17 gi|433590419|ref|YP_007279915.1| - 0.00013 21.6 0.0 0.00023 20.7 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|433590419|ref|YP_007279915.1| - 0.00016 20.9 0.0 0.00029 20.1 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|433590419|ref|YP_007279915.1| - 0.0016 18.0 0.1 0.0045 16.6 0.0 1.8 1 1 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|433590419|ref|YP_007279915.1| - 0.065 12.8 0.0 0.16 11.5 0.0 1.7 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_20 PF12840.2 gi|433590419|ref|YP_007279915.1| - 0.091 12.5 0.0 0.23 11.3 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain eIF-5_eIF-2B PF01873.12 gi|433590420|ref|YP_007279916.1| - 7.1e-31 106.4 0.0 1.1e-30 105.8 0.0 1.3 1 0 0 1 1 1 1 Domain found in IF2B/IF5 TRAM PF01938.15 gi|433590420|ref|YP_007279916.1| - 4.4e-09 35.9 1.0 8.5e-09 35.0 0.7 1.5 1 0 0 1 1 1 1 TRAM domain CBM_4_9 PF02018.12 gi|433590420|ref|YP_007279916.1| - 0.054 13.4 0.1 0.11 12.5 0.1 1.5 1 0 0 1 1 1 0 Carbohydrate binding domain Zn-ribbon_8 PF09723.5 gi|433590420|ref|YP_007279916.1| - 0.13 12.1 0.5 0.23 11.4 0.3 1.4 1 0 0 1 1 1 0 Zinc ribbon domain DUF2387 PF09526.5 gi|433590420|ref|YP_007279916.1| - 0.16 11.9 1.8 0.35 10.8 1.2 1.6 1 1 0 1 1 1 0 Probable metal-binding protein (DUF2387) Lar_restr_allev PF14354.1 gi|433590420|ref|YP_007279916.1| - 0.29 11.4 2.5 17 5.8 1.7 2.3 1 1 0 1 1 1 0 Restriction alleviation protein Lar Aminotran_3 PF00202.16 gi|433590422|ref|YP_007279918.1| - 1e-108 363.1 0.0 1.2e-108 362.9 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.16 gi|433590422|ref|YP_007279918.1| - 7.5e-06 25.1 0.0 1.4e-05 24.1 0.0 1.5 2 0 0 2 2 2 1 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|433590422|ref|YP_007279918.1| - 0.093 11.8 0.0 0.21 10.6 0.0 1.5 1 1 0 1 1 1 0 Beta-eliminating lyase AsnC_trans_reg PF01037.16 gi|433590423|ref|YP_007279919.1| - 8.6e-09 34.9 1.3 1.4e-08 34.3 0.9 1.4 1 0 0 1 1 1 1 AsnC family HTH_24 PF13412.1 gi|433590423|ref|YP_007279919.1| - 2.8e-08 33.0 0.0 4.8e-08 32.2 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.5 gi|433590423|ref|YP_007279919.1| - 3.2e-08 33.0 0.0 6e-08 32.1 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_5 PF01022.15 gi|433590423|ref|YP_007279919.1| - 1.8e-06 27.4 0.0 3.4e-06 26.6 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_27 PF13463.1 gi|433590423|ref|YP_007279919.1| - 8.7e-06 25.9 0.0 2.5e-05 24.5 0.0 1.7 1 0 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.14 gi|433590423|ref|YP_007279919.1| - 9.9e-05 21.9 0.0 0.00028 20.5 0.0 1.8 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|433590423|ref|YP_007279919.1| - 0.0001 21.9 0.0 0.00042 19.9 0.0 2.0 2 0 0 2 2 2 1 MarR family HTH_20 PF12840.2 gi|433590423|ref|YP_007279919.1| - 0.00017 21.3 0.0 0.00038 20.1 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain DUF2250 PF10007.4 gi|433590423|ref|YP_007279919.1| - 0.0053 16.6 0.0 0.01 15.7 0.0 1.5 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) GYD PF08734.6 gi|433590423|ref|YP_007279919.1| - 0.0095 15.6 0.2 0.023 14.3 0.1 1.6 1 1 0 1 1 1 1 GYD domain Sigma70_r4_2 PF08281.7 gi|433590423|ref|YP_007279919.1| - 0.021 14.2 0.0 0.045 13.2 0.0 1.6 1 1 0 1 1 1 0 Sigma-70, region 4 TFIIE_alpha PF02002.12 gi|433590423|ref|YP_007279919.1| - 0.025 14.0 0.0 0.15 11.5 0.0 2.2 1 1 1 2 2 2 0 TFIIE alpha subunit Fe_dep_repress PF01325.14 gi|433590423|ref|YP_007279919.1| - 0.028 14.3 0.1 0.096 12.6 0.0 1.9 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain HTH_23 PF13384.1 gi|433590423|ref|YP_007279919.1| - 0.048 13.3 0.0 0.11 12.2 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain HTH_AsnC-type PF13404.1 gi|433590423|ref|YP_007279919.1| - 0.053 13.0 0.0 0.1 12.1 0.0 1.5 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_DeoR PF08220.7 gi|433590423|ref|YP_007279919.1| - 0.077 12.5 0.0 0.14 11.6 0.0 1.4 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain RbsD_FucU PF05025.8 gi|433590423|ref|YP_007279919.1| - 0.13 12.5 0.5 0.31 11.3 0.2 1.9 1 1 1 2 2 2 0 RbsD / FucU transport protein family MarR PF01047.17 gi|433590423|ref|YP_007279919.1| - 0.14 11.8 0.0 1.8 8.3 0.0 2.5 3 0 0 3 3 3 0 MarR family AA_permease_2 PF13520.1 gi|433590424|ref|YP_007279920.1| - 2.7e-41 141.5 44.9 3.2e-41 141.2 31.1 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|433590424|ref|YP_007279920.1| - 3.1e-32 111.5 44.3 4.5e-32 111.0 30.7 1.3 1 1 0 1 1 1 1 Amino acid permease zinc_ribbon_6 PF14599.1 gi|433590426|ref|YP_007279922.1| - 0.057 13.2 0.0 0.081 12.7 0.0 1.2 1 0 0 1 1 1 0 Zinc-ribbon YceI PF04264.8 gi|433590428|ref|YP_007279924.1| - 0.027 14.4 0.8 0.043 13.7 0.6 1.3 1 0 0 1 1 1 0 YceI-like domain Mrr_N PF14338.1 gi|433590429|ref|YP_007279925.1| - 0.027 14.5 0.0 0.052 13.6 0.0 1.4 1 0 0 1 1 1 0 Mrr N-terminal domain ATS PF15445.1 gi|433590429|ref|YP_007279925.1| - 0.12 11.4 0.1 0.14 11.2 0.0 1.0 1 0 0 1 1 1 0 acidic terminal segments, variant surface antigen of PfEMP1 DEAD PF00270.24 gi|433590430|ref|YP_007279926.1| - 2.8e-21 75.7 0.0 4.2e-21 75.1 0.0 1.2 1 0 0 1 1 1 1 DEAD/DEAH box helicase DUF1998 PF09369.5 gi|433590430|ref|YP_007279926.1| - 7e-16 58.5 0.0 2.2e-15 56.9 0.0 2.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1998) Helicase_C PF00271.26 gi|433590430|ref|YP_007279926.1| - 4.1e-10 39.3 0.1 1.3e-09 37.8 0.0 1.8 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|433590430|ref|YP_007279926.1| - 1.1e-07 31.9 0.0 1.6e-07 31.3 0.0 1.2 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit SNF2_N PF00176.18 gi|433590430|ref|YP_007279926.1| - 0.00011 21.0 0.0 0.00016 20.5 0.0 1.1 1 0 0 1 1 1 1 SNF2 family N-terminal domain DUF1327 PF07041.6 gi|433590430|ref|YP_007279926.1| - 0.22 11.4 0.0 8.6 6.3 0.0 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF1327) RNase_H_2 PF13482.1 gi|433590431|ref|YP_007279927.1| - 3e-25 88.9 0.0 4.2e-25 88.4 0.0 1.2 1 0 0 1 1 1 1 RNase_H superfamily HHH_5 PF14520.1 gi|433590431|ref|YP_007279927.1| - 1.1e-12 47.8 2.4 1.7e-12 47.2 0.1 2.5 4 0 0 4 4 4 1 Helix-hairpin-helix domain HHH PF00633.18 gi|433590431|ref|YP_007279927.1| - 4.9e-09 35.3 0.3 0.00021 20.8 0.0 3.2 3 0 0 3 3 3 2 Helix-hairpin-helix motif HHH_2 PF12826.2 gi|433590431|ref|YP_007279927.1| - 1.8e-05 24.4 0.3 6.1e-05 22.8 0.0 2.0 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_3 PF12836.2 gi|433590431|ref|YP_007279927.1| - 0.0016 18.3 0.0 0.033 14.1 0.0 2.4 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_8 PF14716.1 gi|433590431|ref|YP_007279927.1| - 0.0025 17.9 0.0 0.37 10.9 0.0 2.6 2 0 0 2 2 2 1 Helix-hairpin-helix domain DNA_pol_lambd_f PF10391.4 gi|433590431|ref|YP_007279927.1| - 0.0042 16.5 0.0 3.7 7.1 0.0 2.6 2 0 0 2 2 2 2 Fingers domain of DNA polymerase lambda DNA_pol_B_exo2 PF10108.4 gi|433590431|ref|YP_007279927.1| - 0.0047 16.4 0.1 0.021 14.3 0.0 1.8 2 0 0 2 2 2 1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB GHL15 PF14885.1 gi|433590431|ref|YP_007279927.1| - 0.04 14.1 0.1 0.14 12.4 0.1 1.8 2 0 0 2 2 2 0 Hypothetical glycosyl hydrolase family 15 Thioredoxin PF00085.15 gi|433590432|ref|YP_007279928.1| - 2.8e-12 46.2 0.0 3.4e-12 45.9 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin TraF PF13728.1 gi|433590432|ref|YP_007279928.1| - 8.5e-07 28.6 0.0 1.8e-06 27.6 0.0 1.5 1 1 0 1 1 1 1 F plasmid transfer operon protein Thioredoxin_2 PF13098.1 gi|433590432|ref|YP_007279928.1| - 0.00029 20.9 0.0 0.024 14.8 0.0 2.1 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_3 PF13192.1 gi|433590432|ref|YP_007279928.1| - 0.0003 20.5 0.0 0.00047 19.9 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin domain HyaE PF07449.6 gi|433590432|ref|YP_007279928.1| - 0.039 13.8 0.0 0.098 12.5 0.0 1.8 1 1 0 1 1 1 0 Hydrogenase-1 expression protein HyaE DUF836 PF05768.9 gi|433590432|ref|YP_007279928.1| - 0.12 12.6 0.0 0.15 12.3 0.0 1.2 1 0 0 1 1 1 0 Glutaredoxin-like domain (DUF836) Thioredoxin_8 PF13905.1 gi|433590432|ref|YP_007279928.1| - 0.16 12.1 0.0 9.5 6.4 0.0 2.1 1 1 1 2 2 2 0 Thioredoxin-like DUF1272 PF06906.6 gi|433590433|ref|YP_007279929.1| - 0.041 13.7 1.0 0.041 13.7 0.7 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF1272) Terminase_GpA PF05876.7 gi|433590433|ref|YP_007279929.1| - 0.06 11.7 0.9 0.065 11.5 0.6 1.1 1 0 0 1 1 1 0 Phage terminase large subunit (GpA) DZR PF12773.2 gi|433590433|ref|YP_007279929.1| - 0.065 13.0 1.5 0.27 11.0 1.1 1.9 1 1 0 1 1 1 0 Double zinc ribbon A2L_zn_ribbon PF08792.5 gi|433590433|ref|YP_007279929.1| - 0.12 11.8 1.0 1.6 8.3 0.1 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain DUF1610 PF07754.6 gi|433590433|ref|YP_007279929.1| - 0.17 12.0 2.9 0.34 11.0 2.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF1610) zf-MIZ PF02891.15 gi|433590433|ref|YP_007279929.1| - 0.17 11.3 3.3 0.28 10.7 2.3 1.3 1 0 0 1 1 1 0 MIZ/SP-RING zinc finger zf-B_box PF00643.19 gi|433590433|ref|YP_007279929.1| - 0.25 11.2 2.9 6.5 6.7 0.0 2.2 2 0 0 2 2 2 0 B-box zinc finger Gln-synt_C PF00120.19 gi|433590434|ref|YP_007279930.1| - 1.5e-103 345.4 0.0 6e-103 343.5 0.0 1.8 2 0 0 2 2 2 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.14 gi|433590434|ref|YP_007279930.1| - 1.8e-30 104.3 0.6 8.2e-30 102.2 0.0 2.1 2 0 0 2 2 2 1 Glutamine synthetase, beta-Grasp domain TrmB PF01978.14 gi|433590435|ref|YP_007279931.1| - 3.5e-05 23.4 0.5 4.6e-05 23.0 0.3 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.1 gi|433590435|ref|YP_007279931.1| - 0.039 14.2 0.0 0.055 13.7 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain Metallophos_2 PF12850.2 gi|433590438|ref|YP_007279934.1| - 3e-07 30.3 0.1 5.5e-07 29.5 0.0 1.4 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|433590438|ref|YP_007279934.1| - 0.0099 15.2 0.0 0.1 11.9 0.0 2.2 2 0 0 2 2 2 1 Calcineurin-like phosphoesterase tRNA_anti-codon PF01336.20 gi|433590440|ref|YP_007279936.1| - 8.7e-06 25.5 4.0 0.23 11.3 0.1 4.1 4 0 0 4 4 4 3 OB-fold nucleic acid binding domain PhoU PF01895.14 gi|433590441|ref|YP_007279937.1| - 2e-20 72.9 8.3 6.4e-15 55.3 1.0 2.3 2 0 0 2 2 2 2 PhoU domain Antitoxin-MazE PF04014.13 gi|433590441|ref|YP_007279937.1| - 8.5e-10 38.1 0.0 2.3e-09 36.7 0.0 1.8 1 0 0 1 1 1 1 Antidote-toxin recognition MazE NIR_SIR_ferr PF03460.12 gi|433590441|ref|YP_007279937.1| - 0.073 12.6 0.4 0.25 10.9 0.1 2.0 2 0 0 2 2 2 0 Nitrite/Sulfite reductase ferredoxin-like half domain PBP_like_2 PF12849.2 gi|433590442|ref|YP_007279938.1| - 2.3e-32 112.5 1.5 3.9e-32 111.8 1.0 1.4 1 0 0 1 1 1 1 PBP superfamily domain PBP_like PF12727.2 gi|433590442|ref|YP_007279938.1| - 9.7e-20 70.3 0.0 1.4e-19 69.8 0.0 1.2 1 0 0 1 1 1 1 PBP superfamily domain TAT_signal PF10518.4 gi|433590442|ref|YP_007279938.1| - 0.022 14.7 2.1 0.058 13.4 1.4 1.7 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence UCR_Fe-S_N PF10399.4 gi|433590442|ref|YP_007279938.1| - 0.25 10.5 1.4 0.52 9.5 1.0 1.5 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal BPD_transp_1 PF00528.17 gi|433590443|ref|YP_007279939.1| - 1.1e-16 60.9 15.9 1.1e-16 60.9 11.0 1.9 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|433590444|ref|YP_007279940.1| - 1.1e-17 64.1 16.4 1.1e-17 64.1 11.4 4.6 2 2 2 4 4 4 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.22 gi|433590445|ref|YP_007279941.1| - 1.1e-28 100.2 0.0 1.7e-28 99.6 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|433590445|ref|YP_007279941.1| - 6e-14 52.6 0.0 2.8e-07 30.8 0.0 2.2 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|433590445|ref|YP_007279941.1| - 4.3e-08 32.6 0.7 1.4e-06 27.7 0.5 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|433590445|ref|YP_007279941.1| - 2.9e-06 27.4 0.0 5.4e-06 26.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|433590445|ref|YP_007279941.1| - 4.9e-05 22.7 0.0 0.00014 21.3 0.0 1.7 2 0 0 2 2 1 1 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|433590445|ref|YP_007279941.1| - 7.8e-05 21.8 0.0 0.03 13.3 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.1 gi|433590445|ref|YP_007279941.1| - 0.00017 21.9 0.0 0.00045 20.5 0.0 1.6 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|433590445|ref|YP_007279941.1| - 0.0024 17.9 2.7 0.035 14.0 1.9 2.2 1 1 0 1 1 1 1 AAA ATPase domain DUF258 PF03193.11 gi|433590445|ref|YP_007279941.1| - 0.0033 16.6 0.0 0.0057 15.8 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_19 PF13245.1 gi|433590445|ref|YP_007279941.1| - 0.0068 16.1 0.0 0.83 9.4 0.0 2.4 2 0 0 2 2 2 1 Part of AAA domain AAA_33 PF13671.1 gi|433590445|ref|YP_007279941.1| - 0.011 15.5 0.1 0.029 14.2 0.0 1.9 2 1 0 2 2 1 0 AAA domain AAA_25 PF13481.1 gi|433590445|ref|YP_007279941.1| - 0.014 14.8 0.2 0.068 12.5 0.0 2.0 2 0 0 2 2 2 0 AAA domain DeoRC PF00455.17 gi|433590445|ref|YP_007279941.1| - 0.014 15.0 0.0 0.023 14.3 0.0 1.3 1 0 0 1 1 1 0 DeoR C terminal sensor domain AAA_10 PF12846.2 gi|433590445|ref|YP_007279941.1| - 0.019 14.3 0.0 0.045 13.1 0.0 1.6 2 0 0 2 2 2 0 AAA-like domain AAA_17 PF13207.1 gi|433590445|ref|YP_007279941.1| - 0.022 15.5 0.5 0.098 13.4 0.2 2.2 1 1 1 2 2 2 0 AAA domain NACHT PF05729.7 gi|433590445|ref|YP_007279941.1| - 0.069 12.7 0.0 0.17 11.5 0.0 1.6 1 0 0 1 1 1 0 NACHT domain AAA_14 PF13173.1 gi|433590445|ref|YP_007279941.1| - 0.074 12.9 0.0 0.23 11.3 0.0 1.8 2 0 0 2 2 2 0 AAA domain ABC_ATPase PF09818.4 gi|433590445|ref|YP_007279941.1| - 0.091 11.3 0.0 4.1 5.8 0.0 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class PRK PF00485.13 gi|433590445|ref|YP_007279941.1| - 0.099 12.1 0.0 0.18 11.3 0.0 1.4 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family Arch_ATPase PF01637.13 gi|433590445|ref|YP_007279941.1| - 0.11 12.2 0.0 0.8 9.3 0.0 2.0 2 0 0 2 2 2 0 Archaeal ATPase AAA PF00004.24 gi|433590445|ref|YP_007279941.1| - 0.12 12.6 0.1 1.8 8.7 0.0 2.5 2 1 1 3 3 3 0 ATPase family associated with various cellular activities (AAA) RNA_helicase PF00910.17 gi|433590445|ref|YP_007279941.1| - 0.12 12.5 0.0 0.31 11.2 0.0 1.7 2 0 0 2 2 1 0 RNA helicase Rad17 PF03215.10 gi|433590445|ref|YP_007279941.1| - 0.16 10.5 0.0 0.27 9.8 0.0 1.3 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein PhoU PF01895.14 gi|433590446|ref|YP_007279942.1| - 1.5e-37 127.9 0.5 1.7e-21 76.4 0.1 2.3 2 1 0 2 2 2 2 PhoU domain GHMP_kinases_C PF08544.8 gi|433590446|ref|YP_007279942.1| - 0.021 15.0 0.1 0.13 12.4 0.1 2.5 1 1 0 1 1 1 0 GHMP kinases C terminal CENP-X PF09415.5 gi|433590446|ref|YP_007279942.1| - 0.34 10.7 3.9 0.92 9.3 1.8 2.3 3 0 0 3 3 3 0 CENP-S associating Centromere protein X PBP_like_2 PF12849.2 gi|433590448|ref|YP_007279944.1| - 1.1e-29 103.8 1.0 3e-29 102.3 0.7 1.5 1 1 0 1 1 1 1 PBP superfamily domain PBP_like PF12727.2 gi|433590448|ref|YP_007279944.1| - 4.8e-24 84.3 0.0 8.2e-24 83.6 0.0 1.4 1 0 0 1 1 1 1 PBP superfamily domain DDE_Tnp_ISAZ013 PF07592.6 gi|433590448|ref|YP_007279944.1| - 0.1 11.3 0.0 0.15 10.7 0.0 1.2 1 0 0 1 1 1 0 Rhodopirellula transposase DDE domain BPD_transp_1 PF00528.17 gi|433590449|ref|YP_007279945.1| - 3.1e-16 59.4 15.6 3.1e-16 59.4 10.8 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|433590450|ref|YP_007279946.1| - 4.9e-22 78.3 19.6 4.9e-22 78.3 13.6 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.22 gi|433590451|ref|YP_007279947.1| - 7.4e-29 100.8 0.0 1.1e-28 100.1 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|433590451|ref|YP_007279947.1| - 5.1e-14 52.9 0.0 1.7e-07 31.5 0.0 2.2 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|433590451|ref|YP_007279947.1| - 3.3e-09 36.3 0.1 4.1e-08 32.7 0.1 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|433590451|ref|YP_007279947.1| - 5.1e-06 26.6 0.0 9.3e-06 25.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|433590451|ref|YP_007279947.1| - 2.3e-05 23.6 0.0 0.021 13.9 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_16 PF13191.1 gi|433590451|ref|YP_007279947.1| - 3.8e-05 23.7 0.3 0.016 15.2 0.0 2.2 2 0 0 2 2 2 1 AAA ATPase domain AAA_23 PF13476.1 gi|433590451|ref|YP_007279947.1| - 5.6e-05 23.5 0.0 0.00014 22.2 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|433590451|ref|YP_007279947.1| - 0.00031 20.2 0.0 0.0008 18.8 0.0 1.6 2 0 0 2 2 1 1 P-loop containing region of AAA domain DUF258 PF03193.11 gi|433590451|ref|YP_007279947.1| - 0.00049 19.3 0.0 0.0021 17.2 0.0 1.9 1 1 1 2 2 2 1 Protein of unknown function, DUF258 AAA_25 PF13481.1 gi|433590451|ref|YP_007279947.1| - 0.0057 16.0 0.0 0.035 13.5 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|433590451|ref|YP_007279947.1| - 0.0082 15.8 0.0 1.5 8.5 0.0 2.4 2 0 0 2 2 2 1 Part of AAA domain DeoRC PF00455.17 gi|433590451|ref|YP_007279947.1| - 0.013 15.1 0.0 0.021 14.4 0.0 1.3 1 0 0 1 1 1 0 DeoR C terminal sensor domain AAA_10 PF12846.2 gi|433590451|ref|YP_007279947.1| - 0.018 14.5 0.0 0.04 13.3 0.0 1.6 1 0 0 1 1 1 0 AAA-like domain Rad17 PF03215.10 gi|433590451|ref|YP_007279947.1| - 0.028 13.1 0.0 0.046 12.3 0.0 1.3 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA_33 PF13671.1 gi|433590451|ref|YP_007279947.1| - 0.028 14.3 0.0 0.091 12.6 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_17 PF13207.1 gi|433590451|ref|YP_007279947.1| - 0.032 15.0 1.6 0.13 13.0 1.1 2.4 1 1 0 1 1 1 0 AAA domain Arch_ATPase PF01637.13 gi|433590451|ref|YP_007279947.1| - 0.036 13.7 0.0 0.4 10.3 0.0 2.1 2 0 0 2 2 2 0 Archaeal ATPase Adeno_IVa2 PF02456.10 gi|433590451|ref|YP_007279947.1| - 0.051 12.2 0.0 0.38 9.3 0.0 1.9 2 0 0 2 2 2 0 Adenovirus IVa2 protein AAA_13 PF13166.1 gi|433590451|ref|YP_007279947.1| - 0.056 11.8 0.0 1.6 7.1 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.1 gi|433590451|ref|YP_007279947.1| - 0.098 12.2 0.0 0.9 9.0 0.0 2.0 2 0 0 2 2 2 0 AAA domain NACHT PF05729.7 gi|433590451|ref|YP_007279947.1| - 0.1 12.2 0.0 0.24 11.0 0.0 1.6 1 0 0 1 1 1 0 NACHT domain PRK PF00485.13 gi|433590451|ref|YP_007279947.1| - 0.11 12.0 0.0 0.23 10.9 0.0 1.6 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family DUF457 PF04307.9 gi|433590452|ref|YP_007279948.1| - 6e-15 54.9 11.8 7.7e-15 54.5 8.2 1.1 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) PhoU PF01895.14 gi|433590453|ref|YP_007279949.1| - 6e-35 119.5 15.6 1.1e-18 67.4 1.4 2.2 2 0 0 2 2 2 2 PhoU domain CBM_4_9 PF02018.12 gi|433590454|ref|YP_007279950.1| - 0.016 15.2 0.1 0.041 13.8 0.0 1.6 1 1 0 1 1 1 0 Carbohydrate binding domain Secretin_N_2 PF07655.8 gi|433590454|ref|YP_007279950.1| - 9.3 6.7 12.5 17 5.8 0.0 2.2 2 0 0 2 2 2 0 Secretin N-terminal domain FAD_binding_3 PF01494.14 gi|433590456|ref|YP_007279952.1| - 2.6e-13 49.7 2.0 7e-13 48.3 1.4 1.7 1 1 0 1 1 1 1 FAD binding domain DAO PF01266.19 gi|433590456|ref|YP_007279952.1| - 9.2e-10 37.9 1.7 0.0002 20.3 0.1 2.4 2 1 0 2 2 2 2 FAD dependent oxidoreductase FAD_oxidored PF12831.2 gi|433590456|ref|YP_007279952.1| - 2.9e-06 26.6 0.2 4.1e-06 26.1 0.1 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|433590456|ref|YP_007279952.1| - 5.8e-06 26.2 2.4 1.6e-05 24.8 0.5 2.7 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.9 gi|433590456|ref|YP_007279952.1| - 5.6e-05 23.1 0.0 0.00039 20.3 0.0 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|433590456|ref|YP_007279952.1| - 7e-05 21.8 4.6 0.0016 17.4 3.2 2.2 1 1 0 1 1 1 1 FAD binding domain Thi4 PF01946.12 gi|433590456|ref|YP_007279952.1| - 0.00044 19.4 0.1 0.00077 18.6 0.1 1.3 1 0 0 1 1 1 1 Thi4 family HI0933_like PF03486.9 gi|433590456|ref|YP_007279952.1| - 0.00047 18.7 2.1 0.0014 17.1 0.6 1.9 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox_3 PF13738.1 gi|433590456|ref|YP_007279952.1| - 0.0094 16.0 0.0 0.018 15.1 0.0 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.7 gi|433590456|ref|YP_007279952.1| - 0.05 12.5 0.8 2.2 7.1 0.4 2.1 2 0 0 2 2 2 0 Lycopene cyclase protein Trp_halogenase PF04820.9 gi|433590456|ref|YP_007279952.1| - 0.057 12.0 0.4 0.28 9.7 0.0 2.0 2 0 0 2 2 2 0 Tryptophan halogenase Pyr_redox PF00070.22 gi|433590456|ref|YP_007279952.1| - 0.25 11.7 1.4 21 5.5 0.4 2.6 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|433590456|ref|YP_007279952.1| - 0.74 8.6 4.6 0.34 9.7 1.6 1.5 2 0 0 2 2 2 0 Glucose inhibited division protein A ETF PF01012.16 gi|433590457|ref|YP_007279953.1| - 4.8e-21 75.1 0.0 1.5e-20 73.5 0.0 1.8 2 0 0 2 2 2 1 Electron transfer flavoprotein domain ETF_alpha PF00766.14 gi|433590457|ref|YP_007279953.1| - 6.2e-21 73.8 0.1 1.2e-20 72.8 0.1 1.5 1 0 0 1 1 1 1 Electron transfer flavoprotein FAD-binding domain ETF PF01012.16 gi|433590458|ref|YP_007279954.1| - 3.7e-28 98.3 0.0 5.1e-28 97.8 0.0 1.1 1 0 0 1 1 1 1 Electron transfer flavoprotein domain Bactofilin PF04519.8 gi|433590459|ref|YP_007279955.1| - 3.7e-10 39.7 3.5 2.7e-08 33.7 0.3 3.2 2 2 0 2 2 2 2 Polymer-forming cytoskeletal Hexapep PF00132.19 gi|433590459|ref|YP_007279955.1| - 3.8e-09 35.6 14.7 0.0074 15.7 0.0 6.5 5 2 2 7 7 7 4 Bacterial transferase hexapeptide (six repeats) DUF3494 PF11999.3 gi|433590459|ref|YP_007279955.1| - 0.0016 18.1 0.0 0.14 11.7 0.0 2.5 1 1 1 2 2 2 2 Protein of unknown function (DUF3494) Hexapep_2 PF14602.1 gi|433590459|ref|YP_007279955.1| - 0.012 15.1 16.9 0.24 10.9 0.6 5.3 5 2 0 5 5 5 0 Hexapeptide repeat of succinyl-transferase DUF420 PF04238.7 gi|433590461|ref|YP_007279957.1| - 7.3e-34 116.5 5.8 1.1e-33 116.0 4.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF420) DUF2306 PF10067.4 gi|433590461|ref|YP_007279957.1| - 0.00066 19.7 4.0 0.00066 19.7 2.8 2.6 1 1 1 2 2 2 1 Predicted membrane protein (DUF2306) DUF1240 PF06836.7 gi|433590461|ref|YP_007279957.1| - 0.087 13.0 2.5 0.21 11.8 1.8 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF1240) Fig1 PF12351.3 gi|433590461|ref|YP_007279957.1| - 4.1 7.2 12.4 2.4 7.9 4.0 2.2 2 0 0 2 2 2 0 Ca2+ regulator and membrane fusion protein Fig1 DUF456 PF04306.8 gi|433590462|ref|YP_007279958.1| - 0.0065 16.4 4.8 0.0074 16.3 3.3 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF456) DUF2512 PF10710.4 gi|433590462|ref|YP_007279958.1| - 0.059 12.8 4.4 0.071 12.5 3.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2512) MerT PF02411.10 gi|433590462|ref|YP_007279958.1| - 0.085 12.6 0.5 0.095 12.5 0.3 1.1 1 0 0 1 1 1 0 MerT mercuric transport protein DUF1422 PF07226.6 gi|433590462|ref|YP_007279958.1| - 0.11 12.1 1.1 0.16 11.6 0.7 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF1422) Lysis_S PF04971.7 gi|433590462|ref|YP_007279958.1| - 0.15 11.7 0.4 0.25 11.0 0.2 1.6 1 1 0 1 1 1 0 Lysis protein S DUF2061 PF09834.4 gi|433590462|ref|YP_007279958.1| - 0.15 12.2 5.1 0.1 12.8 2.5 1.6 1 1 0 1 1 1 0 Predicted membrane protein (DUF2061) DUF4225 PF13988.1 gi|433590462|ref|YP_007279958.1| - 1.7 8.0 3.8 2.2 7.6 2.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4225) VKOR PF07884.9 gi|433590462|ref|YP_007279958.1| - 5.3 6.8 7.5 11 5.8 5.2 1.6 1 1 0 1 1 1 0 Vitamin K epoxide reductase family SNARE_assoc PF09335.6 gi|433590463|ref|YP_007279959.1| - 3.1e-12 46.7 0.7 3.1e-12 46.7 0.5 2.6 2 1 1 3 3 3 1 SNARE associated Golgi protein TerY-C PF15616.1 gi|433590464|ref|YP_007279960.1| - 0.037 13.9 1.2 0.044 13.7 0.9 1.2 1 0 0 1 1 1 0 TerY-C metal binding domain Rieske PF00355.21 gi|433590464|ref|YP_007279960.1| - 0.081 12.4 2.1 0.086 12.4 1.5 1.1 1 0 0 1 1 1 0 Rieske [2Fe-2S] domain DUF2043 PF09740.4 gi|433590464|ref|YP_007279960.1| - 0.16 12.1 1.1 0.16 12.0 0.7 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2043) Auto_anti-p27 PF06677.7 gi|433590464|ref|YP_007279960.1| - 0.17 11.6 3.8 0.24 11.1 2.6 1.2 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Ogr_Delta PF04606.7 gi|433590464|ref|YP_007279960.1| - 0.18 11.4 4.1 0.35 10.5 2.9 1.5 1 1 0 1 1 1 0 Ogr/Delta-like zinc finger Zn_ribbon_recom PF13408.1 gi|433590464|ref|YP_007279960.1| - 0.18 12.0 2.3 0.25 11.6 1.6 1.3 1 0 0 1 1 1 0 Recombinase zinc beta ribbon domain zf-Mss51 PF13824.1 gi|433590464|ref|YP_007279960.1| - 1.6 8.6 8.0 2.3 8.1 5.6 1.3 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 PhnA_Zn_Ribbon PF08274.7 gi|433590464|ref|YP_007279960.1| - 2.1 8.2 4.9 7.7 6.3 3.4 1.9 1 1 0 1 1 1 0 PhnA Zinc-Ribbon Fer4_3 PF12798.2 gi|433590464|ref|YP_007279960.1| - 3.5 8.3 5.5 22 5.9 3.8 2.1 1 1 0 1 1 1 0 4Fe-4S binding domain Ribonuc_red_lgC PF02867.10 gi|433590465|ref|YP_007279961.1| - 4.2e-153 510.7 0.0 5.3e-153 510.4 0.0 1.1 1 0 0 1 1 1 1 Ribonucleotide reductase, barrel domain TSCPD PF12637.2 gi|433590465|ref|YP_007279961.1| - 4e-28 97.1 0.0 1.5e-27 95.3 0.0 2.1 1 0 0 1 1 1 1 TSCPD domain Ribonuc_red_lgN PF00317.16 gi|433590465|ref|YP_007279961.1| - 1.6e-24 85.5 0.1 5.6e-24 83.7 0.0 2.1 2 0 0 2 2 2 1 Ribonucleotide reductase, all-alpha domain DUF2461 PF09365.5 gi|433590465|ref|YP_007279961.1| - 0.018 14.4 0.2 0.44 9.9 0.1 2.7 3 0 0 3 3 3 0 Conserved hypothetical protein (DUF2461) zf-ribbon_3 PF13248.1 gi|433590465|ref|YP_007279961.1| - 2.7 7.3 6.8 6 6.2 4.7 1.6 1 0 0 1 1 1 0 zinc-ribbon domain DUF4131 PF13567.1 gi|433590467|ref|YP_007279963.1| - 0.56 9.5 3.8 0.59 9.5 2.6 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) O-antigen_lig PF13425.1 gi|433590467|ref|YP_007279963.1| - 3 7.8 6.8 3.5 7.6 4.7 1.1 1 0 0 1 1 1 0 O-antigen ligase like membrane protein Oleosin PF01277.12 gi|433590467|ref|YP_007279963.1| - 7.6 6.1 11.4 8.6 5.9 7.9 1.1 1 0 0 1 1 1 0 Oleosin GATase PF00117.23 gi|433590468|ref|YP_007279964.1| - 1.2e-46 158.5 0.0 1.5e-46 158.2 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|433590468|ref|YP_007279964.1| - 4.6e-07 29.5 0.0 9.7e-07 28.4 0.0 1.5 1 1 0 1 1 1 1 Peptidase C26 Chorismate_bind PF00425.13 gi|433590469|ref|YP_007279965.1| - 1.7e-88 296.2 0.0 4.7e-87 291.5 0.0 2.1 2 0 0 2 2 2 2 chorismate binding enzyme Anth_synt_I_N PF04715.8 gi|433590469|ref|YP_007279965.1| - 1.2e-21 77.1 2.2 1.3e-20 73.8 0.7 3.2 3 1 0 3 3 3 1 Anthranilate synthase component I, N terminal region PRAI PF00697.17 gi|433590470|ref|YP_007279966.1| - 1.2e-36 126.1 0.0 1.4e-36 125.9 0.0 1.0 1 0 0 1 1 1 1 N-(5'phosphoribosyl)anthranilate (PRA) isomerase Glycos_transf_3 PF00591.16 gi|433590471|ref|YP_007279967.1| - 3.4e-93 311.7 4.6 8.2e-93 310.4 3.2 1.6 1 1 0 1 1 1 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.12 gi|433590471|ref|YP_007279967.1| - 1e-15 57.0 3.0 1e-15 57.0 2.0 2.2 2 0 0 2 2 2 1 Glycosyl transferase family, helical bundle domain DUF2717 PF10911.3 gi|433590471|ref|YP_007279967.1| - 0.017 14.6 0.0 0.04 13.4 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF2717) TAT_signal PF10518.4 gi|433590472|ref|YP_007279968.1| - 0.0056 16.5 0.7 0.0056 16.5 0.5 2.8 3 0 0 3 3 3 1 TAT (twin-arginine translocation) pathway signal sequence Mem_trans PF03547.13 gi|433590473|ref|YP_007279969.1| - 1.3e-24 86.2 18.7 1.1e-14 53.5 6.9 2.1 1 1 1 2 2 2 2 Membrane transport protein DUF2929 PF11151.3 gi|433590473|ref|YP_007279969.1| - 0.1 12.6 0.2 0.1 12.6 0.1 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF2929) Virul_fac_BrkB PF03631.10 gi|433590475|ref|YP_007279971.1| - 1.1e-45 156.0 26.3 1.4e-45 155.6 18.2 1.0 1 0 0 1 1 1 1 Virulence factor BrkB DUF1625 PF07787.7 gi|433590475|ref|YP_007279971.1| - 4.2 6.5 6.0 31 3.7 1.3 2.8 2 1 1 3 3 3 0 Protein of unknown function (DUF1625) CAP PF00188.21 gi|433590476|ref|YP_007279972.1| - 1.9e-13 50.9 0.0 4.4e-13 49.8 0.0 1.6 1 1 0 1 1 1 1 Cysteine-rich secretory protein family DUF2878 PF11086.3 gi|433590477|ref|YP_007279973.1| - 0.038 13.9 0.4 0.056 13.4 0.2 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF2878) CBS PF00571.23 gi|433590478|ref|YP_007279974.1| - 1.1e-41 140.2 10.2 1e-14 54.0 0.1 4.4 4 0 0 4 4 4 4 CBS domain Ribosomal_S30AE PF02482.14 gi|433590478|ref|YP_007279974.1| - 0.0052 17.1 0.1 0.015 15.7 0.1 1.8 2 0 0 2 2 2 1 Sigma 54 modulation protein / S30EA ribosomal protein Rad51 PF08423.6 gi|433590479|ref|YP_007279975.1| - 3.5e-28 98.1 0.0 4.5e-28 97.8 0.0 1.0 1 0 0 1 1 1 1 Rad51 AAA_25 PF13481.1 gi|433590479|ref|YP_007279975.1| - 1.4e-17 63.7 0.3 1.8e-17 63.3 0.2 1.1 1 0 0 1 1 1 1 AAA domain KaiC PF06745.8 gi|433590479|ref|YP_007279975.1| - 4e-11 42.4 0.0 9.1e-11 41.3 0.0 1.5 1 1 0 1 1 1 1 KaiC Zot PF05707.7 gi|433590479|ref|YP_007279975.1| - 9.7e-10 38.2 0.0 1.2e-09 37.9 0.0 1.1 1 0 0 1 1 1 1 Zonular occludens toxin (Zot) RecA PF00154.16 gi|433590479|ref|YP_007279975.1| - 9.5e-09 34.7 0.1 1e-08 34.6 0.0 1.2 1 0 0 1 1 1 1 recA bacterial DNA recombination protein AAA_19 PF13245.1 gi|433590479|ref|YP_007279975.1| - 0.0019 17.8 0.1 0.0053 16.4 0.1 1.7 1 0 0 1 1 1 1 Part of AAA domain AAA_10 PF12846.2 gi|433590479|ref|YP_007279975.1| - 0.0031 17.0 0.1 0.34 10.2 0.0 2.1 1 1 0 2 2 2 1 AAA-like domain IstB_IS21 PF01695.12 gi|433590479|ref|YP_007279975.1| - 0.029 13.7 0.1 0.058 12.8 0.1 1.5 1 1 0 1 1 1 0 IstB-like ATP binding protein AAA_24 PF13479.1 gi|433590479|ref|YP_007279975.1| - 0.057 12.9 0.3 0.11 12.0 0.2 1.5 1 1 0 1 1 1 0 AAA domain Zeta_toxin PF06414.7 gi|433590479|ref|YP_007279975.1| - 0.11 11.6 0.1 0.2 10.7 0.1 1.4 1 0 0 1 1 1 0 Zeta toxin DUF460 PF04312.8 gi|433590480|ref|YP_007279976.1| - 0.015 14.7 0.2 0.037 13.5 0.2 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF460) LytR_C PF13399.1 gi|433590480|ref|YP_007279976.1| - 0.025 14.9 0.5 0.16 12.3 0.1 2.4 2 0 0 2 2 2 0 LytR cell envelope-related transcriptional attenuator Big_3_3 PF13750.1 gi|433590480|ref|YP_007279976.1| - 0.031 13.6 0.0 0.059 12.8 0.0 1.4 1 0 0 1 1 1 0 Bacterial Ig-like domain (group 3) ABC2_membrane_3 PF12698.2 gi|433590482|ref|YP_007279978.1| - 0.19 10.7 7.4 0.21 10.5 5.1 1.0 1 0 0 1 1 1 0 ABC-2 family transporter protein DUF111 PF01969.12 gi|433590484|ref|YP_007279980.1| - 3.4e-135 450.7 1.1 4.4e-135 450.3 0.7 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF111 Transcrip_reg PF01709.15 gi|433590484|ref|YP_007279980.1| - 0.056 12.5 0.0 0.17 10.9 0.0 1.8 2 1 0 2 2 2 0 Transcriptional regulator AAA PF00004.24 gi|433590485|ref|YP_007279981.1| - 1.4e-100 332.7 0.0 1.6e-49 167.4 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.13 gi|433590485|ref|YP_007279981.1| - 2.4e-29 101.1 0.0 1.7e-28 98.3 0.1 2.4 3 0 0 3 3 1 1 Cell division protein 48 (CDC48), N-terminal domain RuvB_N PF05496.7 gi|433590485|ref|YP_007279981.1| - 7.5e-15 54.6 0.0 6.6e-07 28.6 0.0 2.5 2 0 0 2 2 2 2 Holliday junction DNA helicase ruvB N-terminus CDC48_2 PF02933.12 gi|433590485|ref|YP_007279981.1| - 2.6e-14 52.5 0.1 1.2e-13 50.4 0.1 2.2 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), domain 2 AAA_16 PF13191.1 gi|433590485|ref|YP_007279981.1| - 2.7e-14 53.5 0.0 4.9e-07 29.9 0.0 3.3 2 1 0 2 2 2 2 AAA ATPase domain AAA_22 PF13401.1 gi|433590485|ref|YP_007279981.1| - 2e-13 50.6 0.2 0.00044 20.3 0.1 4.3 2 2 0 2 2 2 2 AAA domain AAA_5 PF07728.9 gi|433590485|ref|YP_007279981.1| - 2.2e-13 50.1 1.4 4.7e-05 23.1 0.0 3.9 3 2 0 3 3 2 2 AAA domain (dynein-related subfamily) AAA_2 PF07724.9 gi|433590485|ref|YP_007279981.1| - 5.3e-13 49.2 0.0 1.5e-05 25.0 0.0 2.8 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_17 PF13207.1 gi|433590485|ref|YP_007279981.1| - 3.4e-12 47.2 0.0 0.00013 22.7 0.0 3.3 3 1 0 3 3 2 2 AAA domain AAA_33 PF13671.1 gi|433590485|ref|YP_007279981.1| - 2.4e-11 43.6 0.0 3e-05 23.9 0.0 2.7 2 0 0 2 2 2 2 AAA domain TIP49 PF06068.8 gi|433590485|ref|YP_007279981.1| - 1.1e-10 40.8 0.0 0.0003 19.6 0.0 3.1 3 0 0 3 3 3 2 TIP49 C-terminus AAA_14 PF13173.1 gi|433590485|ref|YP_007279981.1| - 2.1e-09 37.3 0.0 0.0016 18.3 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_19 PF13245.1 gi|433590485|ref|YP_007279981.1| - 2.7e-09 36.6 0.9 0.0012 18.5 0.1 2.9 2 0 0 2 2 2 2 Part of AAA domain IstB_IS21 PF01695.12 gi|433590485|ref|YP_007279981.1| - 1.9e-08 33.9 0.0 0.0057 16.0 0.0 2.4 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_25 PF13481.1 gi|433590485|ref|YP_007279981.1| - 1.1e-07 31.4 6.2 0.98 8.7 0.1 4.5 2 2 1 4 4 4 2 AAA domain Zeta_toxin PF06414.7 gi|433590485|ref|YP_007279981.1| - 2.7e-07 29.8 0.0 0.022 13.8 0.0 2.6 2 0 0 2 2 2 2 Zeta toxin AAA_18 PF13238.1 gi|433590485|ref|YP_007279981.1| - 2.7e-07 30.9 0.0 0.0071 16.6 0.0 2.7 2 0 0 2 2 2 2 AAA domain RNA_helicase PF00910.17 gi|433590485|ref|YP_007279981.1| - 5.4e-07 29.7 0.0 0.047 13.8 0.0 2.5 2 0 0 2 2 2 2 RNA helicase Mg_chelatase PF01078.16 gi|433590485|ref|YP_007279981.1| - 1e-06 28.0 0.1 0.043 12.9 0.0 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_28 PF13521.1 gi|433590485|ref|YP_007279981.1| - 1.4e-06 28.3 0.0 0.014 15.3 0.0 2.7 2 0 0 2 2 2 2 AAA domain Sigma54_activat PF00158.21 gi|433590485|ref|YP_007279981.1| - 6.3e-06 25.7 0.1 0.14 11.6 0.0 3.1 3 1 0 3 3 3 2 Sigma-54 interaction domain AAA_3 PF07726.6 gi|433590485|ref|YP_007279981.1| - 7.9e-06 25.5 0.0 0.13 11.9 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) NB-ARC PF00931.17 gi|433590485|ref|YP_007279981.1| - 1.4e-05 24.1 0.0 0.036 12.9 0.0 2.2 2 0 0 2 2 2 2 NB-ARC domain AAA_24 PF13479.1 gi|433590485|ref|YP_007279981.1| - 1.8e-05 24.4 0.1 0.052 13.1 0.0 2.6 2 0 0 2 2 2 2 AAA domain Arch_ATPase PF01637.13 gi|433590485|ref|YP_007279981.1| - 2.1e-05 24.3 0.0 0.065 12.9 0.0 3.3 2 2 1 3 3 3 1 Archaeal ATPase PhoH PF02562.11 gi|433590485|ref|YP_007279981.1| - 2.6e-05 23.5 1.0 0.16 11.1 0.0 3.0 3 0 0 3 3 3 2 PhoH-like protein KaiC PF06745.8 gi|433590485|ref|YP_007279981.1| - 2.7e-05 23.4 1.8 0.43 9.6 0.0 3.6 3 1 0 4 4 3 2 KaiC DUF815 PF05673.8 gi|433590485|ref|YP_007279981.1| - 3.2e-05 22.9 0.0 0.21 10.5 0.0 2.3 2 0 0 2 2 2 2 Protein of unknown function (DUF815) Sigma54_activ_2 PF14532.1 gi|433590485|ref|YP_007279981.1| - 3.6e-05 23.8 0.0 0.3 11.1 0.0 2.4 2 0 0 2 2 2 2 Sigma-54 interaction domain ABC_tran PF00005.22 gi|433590485|ref|YP_007279981.1| - 5.7e-05 23.4 0.0 0.38 11.0 0.0 2.7 2 0 0 2 2 2 2 ABC transporter NACHT PF05729.7 gi|433590485|ref|YP_007279981.1| - 6.2e-05 22.7 0.1 0.26 10.9 0.0 3.5 4 0 0 4 4 3 1 NACHT domain AAA_30 PF13604.1 gi|433590485|ref|YP_007279981.1| - 0.00012 21.6 0.3 0.66 9.5 0.0 2.9 3 0 0 3 3 2 2 AAA domain DUF2075 PF09848.4 gi|433590485|ref|YP_007279981.1| - 0.00021 20.4 0.0 0.25 10.2 0.0 2.3 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) SKI PF01202.17 gi|433590485|ref|YP_007279981.1| - 0.00022 21.0 0.0 0.28 11.0 0.0 2.5 2 0 0 2 2 2 1 Shikimate kinase Parvo_NS1 PF01057.12 gi|433590485|ref|YP_007279981.1| - 0.00037 19.4 0.2 0.42 9.4 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 NTPase_1 PF03266.10 gi|433590485|ref|YP_007279981.1| - 0.00041 20.1 0.4 1.9 8.1 0.0 3.4 2 1 1 3 3 3 2 NTPase AAA_11 PF13086.1 gi|433590485|ref|YP_007279981.1| - 0.00043 19.9 0.0 0.53 9.8 0.0 2.3 2 0 0 2 2 2 2 AAA domain IPT PF01745.11 gi|433590485|ref|YP_007279981.1| - 0.0013 17.9 0.9 0.45 9.6 0.0 2.9 3 0 0 3 3 3 1 Isopentenyl transferase ResIII PF04851.10 gi|433590485|ref|YP_007279981.1| - 0.0027 17.5 0.0 2.9 7.6 0.0 2.4 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit Bac_DnaA PF00308.13 gi|433590485|ref|YP_007279981.1| - 0.0027 17.3 0.0 2.1 7.9 0.0 2.8 3 0 0 3 3 2 1 Bacterial dnaA protein UPF0079 PF02367.12 gi|433590485|ref|YP_007279981.1| - 0.0029 17.2 0.1 1.6 8.3 0.0 2.4 2 0 0 2 2 2 1 Uncharacterised P-loop hydrolase UPF0079 KAP_NTPase PF07693.9 gi|433590485|ref|YP_007279981.1| - 0.0032 16.5 0.0 2.4 7.0 0.0 2.9 2 2 0 3 3 3 1 KAP family P-loop domain Viral_helicase1 PF01443.13 gi|433590485|ref|YP_007279981.1| - 0.012 15.1 0.0 1 8.8 0.0 2.2 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase KTI12 PF08433.5 gi|433590485|ref|YP_007279981.1| - 0.021 14.0 0.0 9.5 5.3 0.0 2.9 3 0 0 3 3 3 0 Chromatin associated protein KTI12 Vps4_C PF09336.5 gi|433590485|ref|YP_007279981.1| - 0.023 14.5 0.1 0.17 11.8 0.0 2.3 2 0 0 2 2 2 0 Vps4 C terminal oligomerisation domain Torsin PF06309.6 gi|433590485|ref|YP_007279981.1| - 0.024 14.5 0.0 3.8 7.4 0.0 2.4 2 0 0 2 2 2 0 Torsin T2SE PF00437.15 gi|433590485|ref|YP_007279981.1| - 0.03 13.2 0.0 7.4 5.3 0.0 2.4 2 0 0 2 2 2 0 Type II/IV secretion system protein ATP-synt_ab PF00006.20 gi|433590485|ref|YP_007279981.1| - 0.03 13.8 0.0 9.1 5.7 0.0 2.3 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain CPT PF07931.7 gi|433590485|ref|YP_007279981.1| - 0.038 13.5 0.0 3.2 7.3 0.0 2.4 2 0 0 2 2 2 0 Chloramphenicol phosphotransferase-like protein Cytidylate_kin2 PF13189.1 gi|433590485|ref|YP_007279981.1| - 0.061 13.2 0.0 2.2 8.1 0.0 2.3 2 0 0 2 2 2 0 Cytidylate kinase-like family AFG1_ATPase PF03969.11 gi|433590485|ref|YP_007279981.1| - 0.076 11.8 0.0 1.8 7.2 0.0 2.2 2 0 0 2 2 2 0 AFG1-like ATPase Guanylate_kin PF00625.16 gi|433590485|ref|YP_007279981.1| - 0.079 12.3 0.2 43 3.4 0.0 3.4 2 1 1 3 3 3 0 Guanylate kinase Arch_fla_DE PF04659.8 gi|433590485|ref|YP_007279981.1| - 0.12 12.2 0.0 0.85 9.4 0.0 2.4 3 0 0 3 3 2 0 Archaeal flagella protein AAA_10 PF12846.2 gi|433590486|ref|YP_007279982.1| - 4.1e-13 49.4 0.0 3.6e-07 29.9 0.0 2.1 1 1 0 2 2 2 2 AAA-like domain DUF87 PF01935.12 gi|433590486|ref|YP_007279982.1| - 4.8e-07 29.8 0.0 1.3e-06 28.4 0.0 1.7 1 1 0 1 1 1 1 Domain of unknown function DUF87 DUF853 PF05872.7 gi|433590486|ref|YP_007279982.1| - 0.00023 19.6 0.2 0.013 13.8 0.0 2.1 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) TrwB_AAD_bind PF10412.4 gi|433590486|ref|YP_007279982.1| - 0.0016 17.0 0.0 1.1 7.7 0.0 2.1 2 0 0 2 2 2 2 Type IV secretion-system coupling protein DNA-binding domain FtsK_SpoIIIE PF01580.13 gi|433590486|ref|YP_007279982.1| - 0.02 14.4 0.1 1.1 8.6 0.0 2.3 2 0 0 2 2 2 0 FtsK/SpoIIIE family AAA_22 PF13401.1 gi|433590486|ref|YP_007279982.1| - 0.029 14.4 0.0 5 7.2 0.0 2.7 3 0 0 3 3 3 0 AAA domain DUF3333 PF11812.3 gi|433590487|ref|YP_007279983.1| - 0.076 13.0 0.1 0.1 12.5 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3333) DUF2964 PF11177.3 gi|433590487|ref|YP_007279983.1| - 0.088 12.7 2.3 0.15 12.0 1.6 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2964) DUF4307 PF14155.1 gi|433590487|ref|YP_007279983.1| - 0.17 11.7 0.7 0.26 11.0 0.5 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4307) DUF543 PF04418.7 gi|433590488|ref|YP_007279984.1| - 0.19 11.7 4.2 0.54 10.2 2.9 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF543) TrkA_C PF02080.16 gi|433590489|ref|YP_007279985.1| - 0.00064 19.2 0.1 0.00064 19.2 0.1 2.1 2 0 0 2 2 2 1 TrkA-C domain YqhR PF11085.3 gi|433590489|ref|YP_007279985.1| - 0.25 10.8 1.0 0.36 10.3 0.7 1.2 1 0 0 1 1 1 0 Conserved membrane protein YqhR AAA PF00004.24 gi|433590490|ref|YP_007279986.1| - 5.5e-96 317.8 0.0 7.6e-47 158.8 0.0 2.3 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.13 gi|433590490|ref|YP_007279986.1| - 3.5e-20 71.7 2.4 5.5e-20 71.1 0.4 2.3 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), N-terminal domain RuvB_N PF05496.7 gi|433590490|ref|YP_007279986.1| - 9.5e-16 57.5 0.1 4.3e-07 29.2 0.0 4.1 5 1 1 6 6 5 2 Holliday junction DNA helicase ruvB N-terminus AAA_2 PF07724.9 gi|433590490|ref|YP_007279986.1| - 7.1e-14 52.0 0.0 1.3e-06 28.4 0.0 2.4 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_5 PF07728.9 gi|433590490|ref|YP_007279986.1| - 1.2e-13 50.9 0.3 2.9e-05 23.8 0.0 3.7 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_16 PF13191.1 gi|433590490|ref|YP_007279986.1| - 2e-13 50.7 1.1 6e-05 23.1 0.0 4.0 3 2 0 3 3 2 2 AAA ATPase domain AAA_17 PF13207.1 gi|433590490|ref|YP_007279986.1| - 1.4e-12 48.4 1.6 6.1e-05 23.8 0.0 3.6 2 2 0 2 2 2 2 AAA domain AAA_33 PF13671.1 gi|433590490|ref|YP_007279986.1| - 3.4e-12 46.4 0.0 3e-05 23.9 0.0 2.8 2 0 0 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|433590490|ref|YP_007279986.1| - 1e-11 45.1 0.1 0.0025 17.9 0.0 4.1 2 2 1 3 3 3 2 AAA domain AAA_14 PF13173.1 gi|433590490|ref|YP_007279986.1| - 3.5e-10 39.8 0.0 0.00095 19.0 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_19 PF13245.1 gi|433590490|ref|YP_007279986.1| - 8.4e-10 38.2 0.6 0.0021 17.7 0.0 3.8 3 0 0 3 3 3 2 Part of AAA domain Zeta_toxin PF06414.7 gi|433590490|ref|YP_007279986.1| - 1.7e-09 37.0 0.0 0.00039 19.5 0.0 2.7 2 0 0 2 2 2 2 Zeta toxin AAA_28 PF13521.1 gi|433590490|ref|YP_007279986.1| - 2.8e-09 37.1 0.0 0.0015 18.5 0.0 2.9 2 0 0 2 2 2 2 AAA domain TIP49 PF06068.8 gi|433590490|ref|YP_007279986.1| - 1.2e-08 34.1 0.0 0.0017 17.1 0.0 2.3 2 0 0 2 2 2 2 TIP49 C-terminus IstB_IS21 PF01695.12 gi|433590490|ref|YP_007279986.1| - 4.3e-08 32.7 0.0 0.0057 16.0 0.0 2.5 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_18 PF13238.1 gi|433590490|ref|YP_007279986.1| - 7.7e-08 32.7 0.0 0.021 15.1 0.0 3.0 2 0 0 2 2 2 2 AAA domain AAA_25 PF13481.1 gi|433590490|ref|YP_007279986.1| - 9.5e-08 31.6 4.6 0.018 14.4 0.2 4.3 2 2 1 3 3 3 2 AAA domain RNA_helicase PF00910.17 gi|433590490|ref|YP_007279986.1| - 3.1e-07 30.5 0.0 0.019 15.1 0.0 2.4 2 0 0 2 2 2 2 RNA helicase CDC48_2 PF02933.12 gi|433590490|ref|YP_007279986.1| - 3.7e-07 29.6 0.4 1.4e-06 27.8 0.1 2.0 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), domain 2 AAA_3 PF07726.6 gi|433590490|ref|YP_007279986.1| - 3.7e-07 29.7 0.0 0.031 13.8 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.16 gi|433590490|ref|YP_007279986.1| - 7.3e-07 28.5 0.2 0.028 13.5 0.1 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Sigma54_activ_2 PF14532.1 gi|433590490|ref|YP_007279986.1| - 7.5e-07 29.2 0.0 0.022 14.8 0.0 2.4 2 0 0 2 2 2 2 Sigma-54 interaction domain ABC_tran PF00005.22 gi|433590490|ref|YP_007279986.1| - 1.3e-06 28.7 0.0 0.029 14.6 0.0 2.5 2 0 0 2 2 2 2 ABC transporter AAA_24 PF13479.1 gi|433590490|ref|YP_007279986.1| - 2.3e-06 27.3 0.0 0.029 13.9 0.0 2.5 2 0 0 2 2 2 2 AAA domain Arch_ATPase PF01637.13 gi|433590490|ref|YP_007279986.1| - 7.9e-06 25.7 0.0 0.5 10.0 0.0 3.7 2 2 0 2 2 2 2 Archaeal ATPase DUF815 PF05673.8 gi|433590490|ref|YP_007279986.1| - 1.3e-05 24.2 0.0 0.022 13.7 0.0 2.3 2 0 0 2 2 2 2 Protein of unknown function (DUF815) Sigma54_activat PF00158.21 gi|433590490|ref|YP_007279986.1| - 1.4e-05 24.6 0.0 0.29 10.5 0.0 3.0 3 1 0 3 3 2 2 Sigma-54 interaction domain Parvo_NS1 PF01057.12 gi|433590490|ref|YP_007279986.1| - 3.2e-05 22.9 0.0 0.16 10.8 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 PhoH PF02562.11 gi|433590490|ref|YP_007279986.1| - 6.6e-05 22.2 0.0 0.4 9.8 0.0 2.5 2 0 0 2 2 2 2 PhoH-like protein DUF2075 PF09848.4 gi|433590490|ref|YP_007279986.1| - 0.00017 20.6 0.0 0.31 9.9 0.0 2.4 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) NACHT PF05729.7 gi|433590490|ref|YP_007279986.1| - 0.00024 20.7 0.1 1.2 8.7 0.0 3.5 4 0 0 4 4 4 1 NACHT domain NB-ARC PF00931.17 gi|433590490|ref|YP_007279986.1| - 0.00029 19.7 0.0 0.11 11.3 0.0 2.3 2 0 0 2 2 2 1 NB-ARC domain AAA_11 PF13086.1 gi|433590490|ref|YP_007279986.1| - 0.00039 20.0 0.0 0.67 9.4 0.0 2.4 2 1 0 2 2 2 2 AAA domain UPF0079 PF02367.12 gi|433590490|ref|YP_007279986.1| - 0.00054 19.5 0.0 1.2 8.7 0.0 2.4 2 0 0 2 2 2 2 Uncharacterised P-loop hydrolase UPF0079 KaiC PF06745.8 gi|433590490|ref|YP_007279986.1| - 0.00065 18.8 0.0 1.4 7.9 0.0 2.8 2 0 0 2 2 2 2 KaiC AAA_30 PF13604.1 gi|433590490|ref|YP_007279986.1| - 0.0019 17.8 0.0 1.3 8.5 0.0 2.9 2 0 0 2 2 2 1 AAA domain SKI PF01202.17 gi|433590490|ref|YP_007279986.1| - 0.0023 17.7 0.0 0.91 9.3 0.0 2.6 2 0 0 2 2 2 1 Shikimate kinase NTPase_1 PF03266.10 gi|433590490|ref|YP_007279986.1| - 0.0089 15.7 0.0 9.6 5.8 0.0 3.6 3 2 0 4 4 4 0 NTPase Antitoxin-MazE PF04014.13 gi|433590490|ref|YP_007279986.1| - 0.014 15.0 0.1 0.56 9.9 0.1 2.7 2 0 0 2 2 2 0 Antidote-toxin recognition MazE Cytidylate_kin2 PF13189.1 gi|433590490|ref|YP_007279986.1| - 0.02 14.8 0.0 3.7 7.4 0.0 2.4 2 0 0 2 2 2 0 Cytidylate kinase-like family Bac_DnaA PF00308.13 gi|433590490|ref|YP_007279986.1| - 0.051 13.2 0.0 7.1 6.2 0.0 2.7 3 0 0 3 3 2 0 Bacterial dnaA protein MMR_HSR1 PF01926.18 gi|433590490|ref|YP_007279986.1| - 0.062 13.2 0.0 14 5.6 0.0 2.9 2 0 0 2 2 2 0 50S ribosome-binding GTPase AFG1_ATPase PF03969.11 gi|433590490|ref|YP_007279986.1| - 0.087 11.6 0.0 5.1 5.7 0.0 2.3 2 0 0 2 2 2 0 AFG1-like ATPase ResIII PF04851.10 gi|433590490|ref|YP_007279986.1| - 0.088 12.6 0.0 7.4 6.3 0.0 2.3 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit KAP_NTPase PF07693.9 gi|433590490|ref|YP_007279986.1| - 0.14 11.1 0.0 5.4 5.8 0.0 2.3 2 1 0 2 2 2 0 KAP family P-loop domain KTI12 PF08433.5 gi|433590490|ref|YP_007279986.1| - 0.14 11.3 0.0 17 4.4 0.0 2.3 2 0 0 2 2 2 0 Chromatin associated protein KTI12 AAA_23 PF13476.1 gi|433590490|ref|YP_007279986.1| - 0.17 12.2 0.0 32 4.7 0.0 2.5 2 0 0 2 2 2 0 AAA domain Miro PF08477.8 gi|433590490|ref|YP_007279986.1| - 0.17 12.3 0.0 15 6.0 0.0 2.6 2 0 0 2 2 2 0 Miro-like protein IPT PF01745.11 gi|433590490|ref|YP_007279986.1| - 0.18 10.9 0.0 6.8 5.7 0.0 2.2 2 0 0 2 2 2 0 Isopentenyl transferase AAA_21 PF13304.1 gi|433590490|ref|YP_007279986.1| - 0.2 11.5 0.3 13 5.5 0.0 2.9 2 2 1 3 3 2 0 AAA domain DAP3 PF10236.4 gi|433590490|ref|YP_007279986.1| - 0.3 9.9 0.0 4.1 6.2 0.0 2.1 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 HTH_10 PF04967.7 gi|433590491|ref|YP_007279987.1| - 1.4e-13 50.1 0.0 2.1e-13 49.6 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain HTH_AsnC-type PF13404.1 gi|433590491|ref|YP_007279987.1| - 0.0039 16.6 0.4 0.013 15.0 0.3 1.9 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain Sigma70_r4 PF04545.11 gi|433590491|ref|YP_007279987.1| - 0.007 15.6 0.1 0.011 14.9 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_24 PF13412.1 gi|433590491|ref|YP_007279987.1| - 0.071 12.5 0.0 0.13 11.6 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Ribonuc_red_sm PF00268.16 gi|433590492|ref|YP_007279988.1| - 2.5e-06 26.7 0.0 1.5e-05 24.1 0.0 1.9 1 1 0 1 1 1 1 Ribonucleotide reductase, small chain zf-C2H2_3 PF13878.1 gi|433590493|ref|YP_007279989.1| - 0.012 15.1 3.4 0.021 14.3 2.4 1.5 1 1 0 1 1 1 0 zinc-finger of acetyl-transferase ESCO RNHCP PF12647.2 gi|433590493|ref|YP_007279989.1| - 0.054 13.3 0.3 0.058 13.2 0.2 1.1 1 0 0 1 1 1 0 RNHCP domain zf-C2H2 PF00096.21 gi|433590493|ref|YP_007279989.1| - 0.056 13.8 0.2 0.081 13.2 0.2 1.3 1 0 0 1 1 1 0 Zinc finger, C2H2 type Zn-ribbon_8 PF09723.5 gi|433590493|ref|YP_007279989.1| - 0.066 13.1 0.9 0.087 12.7 0.6 1.2 1 0 0 1 1 1 0 Zinc ribbon domain Rubredoxin PF00301.15 gi|433590493|ref|YP_007279989.1| - 0.11 12.4 0.6 0.14 12.0 0.4 1.3 1 0 0 1 1 1 0 Rubredoxin GHMP_kinases_N PF00288.21 gi|433590496|ref|YP_007279992.1| - 6.3e-10 38.9 1.7 1.8e-09 37.5 1.2 1.8 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|433590496|ref|YP_007279992.1| - 0.0013 18.8 0.5 0.0055 16.8 0.0 2.3 2 0 0 2 2 2 1 GHMP kinases C terminal CM_2 PF01817.16 gi|433590497|ref|YP_007279993.1| - 2.7e-19 69.0 2.9 3.2e-19 68.7 2.0 1.1 1 0 0 1 1 1 1 Chorismate mutase type II DUF1192 PF06698.6 gi|433590497|ref|YP_007279993.1| - 0.043 13.6 0.2 0.079 12.7 0.2 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1192) DUF4404 PF14357.1 gi|433590497|ref|YP_007279993.1| - 0.072 13.5 1.6 0.11 12.9 1.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4404) PemK PF02452.12 gi|433590498|ref|YP_007279994.1| - 1.7e-26 92.5 0.0 1.9e-26 92.4 0.0 1.0 1 0 0 1 1 1 1 PemK-like protein zf-ribbon_3 PF13248.1 gi|433590500|ref|YP_007279996.1| - 0.0015 17.7 0.6 0.84 8.9 0.0 2.2 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.2 gi|433590500|ref|YP_007279996.1| - 0.0063 16.3 0.3 0.0072 16.1 0.2 1.2 1 0 0 1 1 1 1 Double zinc ribbon RNHCP PF12647.2 gi|433590500|ref|YP_007279996.1| - 0.018 14.8 0.2 0.023 14.5 0.1 1.2 1 0 0 1 1 1 0 RNHCP domain GATA PF00320.22 gi|433590500|ref|YP_007279996.1| - 0.035 13.4 0.2 0.16 11.3 0.1 1.9 1 1 0 1 1 1 0 GATA zinc finger RecR PF02132.10 gi|433590500|ref|YP_007279996.1| - 0.16 11.4 0.5 10 5.6 0.0 2.1 2 0 0 2 2 2 0 RecR protein OrfB_Zn_ribbon PF07282.6 gi|433590500|ref|YP_007279996.1| - 0.17 11.5 2.3 0.77 9.4 0.1 2.0 1 1 0 1 1 1 0 Putative transposase DNA-binding domain zinc_ribbon_2 PF13240.1 gi|433590500|ref|YP_007279996.1| - 0.26 10.8 2.0 2.4 7.7 0.2 2.1 2 0 0 2 2 2 0 zinc-ribbon domain zf-tcix PF14952.1 gi|433590500|ref|YP_007279996.1| - 0.27 10.6 1.3 2.9 7.3 0.1 2.1 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding Zn-ribbon_8 PF09723.5 gi|433590500|ref|YP_007279996.1| - 0.57 10.1 4.5 7.4 6.6 3.0 2.1 1 1 0 1 1 1 0 Zinc ribbon domain zinc_ribbon_5 PF13719.1 gi|433590500|ref|YP_007279996.1| - 0.62 9.7 3.7 1.7 8.2 0.2 2.1 2 0 0 2 2 2 0 zinc-ribbon domain UPF0547 PF10571.4 gi|433590500|ref|YP_007279996.1| - 0.62 9.8 5.6 3.1 7.5 0.2 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zinc_ribbon_4 PF13717.1 gi|433590500|ref|YP_007279996.1| - 1.1 8.9 3.9 3.2 7.5 0.2 2.1 2 0 0 2 2 2 0 zinc-ribbon domain RHH_1 PF01402.16 gi|433590501|ref|YP_007279997.1| - 0.021 14.7 1.7 0.031 14.1 1.2 1.3 1 0 0 1 1 1 0 Ribbon-helix-helix protein, copG family Adeno_Penton_B PF01686.12 gi|433590502|ref|YP_007279998.1| - 0.058 11.6 2.1 0.07 11.3 1.4 1.1 1 0 0 1 1 1 0 Adenovirus penton base protein DDE_Tnp_1 PF01609.16 gi|433590503|ref|YP_007279999.1| - 9.4e-11 41.6 2.7 1.7e-10 40.8 1.9 1.4 1 0 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.6 gi|433590503|ref|YP_007279999.1| - 0.021 14.7 0.1 0.061 13.2 0.1 1.8 1 0 0 1 1 1 0 Transposase domain (DUF772) DDE_Tnp_1_assoc PF13808.1 gi|433590503|ref|YP_007279999.1| - 0.09 12.4 0.2 0.18 11.5 0.1 1.6 1 0 0 1 1 1 0 DDE_Tnp_1-associated Transglut_C PF00927.17 gi|433590504|ref|YP_007280000.1| - 0.00061 19.8 0.0 1.6 8.7 0.0 3.3 3 0 0 3 3 3 2 Transglutaminase family, C-terminal ig like domain Big_1 PF02369.11 gi|433590504|ref|YP_007280000.1| - 0.0019 18.0 3.7 0.0019 18.0 2.6 8.5 7 3 1 9 9 9 2 Bacterial Ig-like domain (group 1) DUF824 PF05688.6 gi|433590504|ref|YP_007280000.1| - 0.015 14.8 0.2 0.015 14.8 0.2 4.7 5 0 0 5 5 5 0 Salmonella repeat of unknown function (DUF824) Peptidase_S8 PF00082.17 gi|433590505|ref|YP_007280001.1| - 4.4e-53 180.2 6.8 4.4e-53 180.2 4.7 1.9 2 0 0 2 2 2 1 Subtilase family Inhibitor_I9 PF05922.11 gi|433590505|ref|YP_007280001.1| - 0.076 13.5 0.0 0.16 12.5 0.0 1.6 1 0 0 1 1 1 0 Peptidase inhibitor I9 HTH_29 PF13551.1 gi|433590506|ref|YP_007280002.1| - 3.2e-14 53.0 0.0 2.5e-13 50.1 0.0 2.4 2 1 1 3 3 3 1 Winged helix-turn helix DDE_3 PF13358.1 gi|433590506|ref|YP_007280002.1| - 1.6e-12 47.4 0.1 3.7e-12 46.2 0.0 1.6 2 0 0 2 2 2 1 DDE superfamily endonuclease HTH_32 PF13565.1 gi|433590506|ref|YP_007280002.1| - 1.9e-11 44.6 0.6 2.7e-10 40.8 0.0 2.6 2 0 0 2 2 2 1 Homeodomain-like domain HTH_23 PF13384.1 gi|433590506|ref|YP_007280002.1| - 9.7e-09 34.6 0.0 3.5e-08 32.8 0.0 2.0 2 0 0 2 2 2 1 Homeodomain-like domain HTH_33 PF13592.1 gi|433590506|ref|YP_007280002.1| - 2.9e-08 33.1 0.0 8.3e-07 28.4 0.0 2.4 2 0 0 2 2 2 1 Winged helix-turn helix HTH_28 PF13518.1 gi|433590506|ref|YP_007280002.1| - 6.6e-06 26.0 0.0 1.7e-05 24.7 0.0 1.7 2 0 0 2 2 1 1 Helix-turn-helix domain rve PF00665.21 gi|433590506|ref|YP_007280002.1| - 6.8e-05 22.9 0.0 0.00013 22.0 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain DDE_1 PF03184.14 gi|433590506|ref|YP_007280002.1| - 0.0006 19.0 0.0 0.00098 18.3 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_7 PF02796.10 gi|433590506|ref|YP_007280002.1| - 0.0015 18.3 0.1 0.0034 17.2 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase Sigma70_r4 PF04545.11 gi|433590506|ref|YP_007280002.1| - 0.0035 16.6 0.0 0.011 14.9 0.0 1.9 1 0 0 1 1 1 1 Sigma-70, region 4 DUF746 PF05344.6 gi|433590506|ref|YP_007280002.1| - 0.0099 15.3 0.0 0.029 13.8 0.0 1.8 1 0 0 1 1 1 1 Domain of Unknown Function (DUF746) LZ_Tnp_IS481 PF13011.1 gi|433590506|ref|YP_007280002.1| - 0.041 14.2 0.0 0.09 13.1 0.0 1.5 1 0 0 1 1 1 0 leucine-zipper of insertion element IS481 Sigma70_r4_2 PF08281.7 gi|433590506|ref|YP_007280002.1| - 0.048 13.1 0.1 0.17 11.3 0.0 1.9 2 0 0 2 2 2 0 Sigma-70, region 4 DUF4625 PF15418.1 gi|433590507|ref|YP_007280003.1| - 0.016 15.3 0.1 1.4 9.0 0.0 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4625) Fn3-like PF14310.1 gi|433590507|ref|YP_007280003.1| - 0.031 14.2 0.2 0.48 10.4 0.0 2.5 2 0 0 2 2 2 0 Fibronectin type III-like domain DUF2808 PF10989.3 gi|433590507|ref|YP_007280003.1| - 0.1 12.2 0.7 1.8 8.1 0.0 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF2808) Collagen PF01391.13 gi|433590508|ref|YP_007280004.1| - 1.2e-06 27.9 20.3 1.2e-06 27.9 14.1 2.5 2 0 0 2 2 2 1 Collagen triple helix repeat (20 copies) Cupredoxin_1 PF13473.1 gi|433590508|ref|YP_007280004.1| - 0.1 12.5 0.0 1.1 9.1 0.0 2.7 1 1 1 2 2 2 0 Cupredoxin-like domain DUF2141 PF09912.4 gi|433590509|ref|YP_007280005.1| - 0.12 12.0 0.4 3.6 7.2 0.0 3.2 3 1 1 4 4 4 0 Uncharacterized protein conserved in bacteria (DUF2141) DUF1034 PF06280.7 gi|433590509|ref|YP_007280005.1| - 3.9 7.9 6.4 1 9.7 0.1 2.9 3 1 0 3 3 3 0 Fn3-like domain (DUF1034) MMPL PF03176.10 gi|433590510|ref|YP_007280006.1| - 7.5e-32 110.3 25.2 2.9e-17 62.3 5.4 2.7 2 1 0 2 2 2 2 MMPL family Patched PF02460.13 gi|433590510|ref|YP_007280006.1| - 2.2e-12 45.7 18.2 8.9e-11 40.4 3.5 2.1 2 0 0 2 2 2 2 Patched family Sterol-sensing PF12349.3 gi|433590510|ref|YP_007280006.1| - 1.1e-08 34.6 19.1 2.6e-08 33.4 1.3 2.8 3 0 0 3 3 3 2 Sterol-sensing domain of SREBP cleavage-activation Mitofilin PF09731.4 gi|433590510|ref|YP_007280006.1| - 0.057 12.0 0.1 0.095 11.3 0.1 1.3 1 0 0 1 1 1 0 Mitochondrial inner membrane protein CARDB PF07705.6 gi|433590511|ref|YP_007280007.1| - 8.2e-16 57.9 6.7 0.0014 18.6 0.1 4.4 4 0 0 4 4 4 4 CARDB NPCBM_assoc PF10633.4 gi|433590511|ref|YP_007280007.1| - 2.7e-12 46.5 14.1 0.00016 21.6 0.2 7.1 6 2 0 6 6 6 4 NPCBM-associated, NEW3 domain of alpha-galactosidase Transglut_C PF00927.17 gi|433590511|ref|YP_007280007.1| - 8.3e-08 32.2 0.1 0.065 13.2 0.0 4.3 4 1 0 4 4 4 3 Transglutaminase family, C-terminal ig like domain TRAP_beta PF05753.9 gi|433590511|ref|YP_007280007.1| - 5.2e-05 22.4 3.1 0.15 11.1 0.2 3.5 2 1 1 3 3 3 2 Translocon-associated protein beta (TRAPB) DUF11 PF01345.13 gi|433590511|ref|YP_007280007.1| - 0.00017 21.5 16.6 0.0042 17.1 1.1 4.6 4 0 0 4 4 4 2 Domain of unknown function DUF11 DUF2393 PF09624.5 gi|433590511|ref|YP_007280007.1| - 0.0017 17.8 1.4 0.21 11.1 0.0 4.0 4 2 0 4 4 4 1 Protein of unknown function (DUF2393) DUF1081 PF06448.6 gi|433590511|ref|YP_007280007.1| - 0.028 14.2 1.6 0.92 9.4 0.1 3.0 3 1 0 4 4 4 0 Domain of Unknown Function (DUF1081) Fn3-like PF14310.1 gi|433590511|ref|YP_007280007.1| - 0.034 14.0 2.9 2.3 8.2 0.0 4.2 5 0 0 5 5 5 0 Fibronectin type III-like domain DUF2383 PF09537.5 gi|433590511|ref|YP_007280007.1| - 0.12 12.6 0.0 0.31 11.2 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF2383) Pyr_redox_2 PF07992.9 gi|433590512|ref|YP_007280008.1| - 4.6e-24 85.4 0.6 7.3e-24 84.7 0.4 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Glutaredoxin PF00462.19 gi|433590512|ref|YP_007280008.1| - 2.1e-20 72.4 0.1 6.6e-20 70.8 0.1 1.9 1 0 0 1 1 1 1 Glutaredoxin Pyr_redox PF00070.22 gi|433590512|ref|YP_007280008.1| - 6.5e-14 52.1 3.2 9.1e-13 48.4 0.3 2.6 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|433590512|ref|YP_007280008.1| - 5.6e-11 42.8 0.0 8.3e-09 35.8 0.0 2.6 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|433590512|ref|YP_007280008.1| - 1.3e-06 27.5 0.3 0.0052 15.7 0.0 2.5 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|433590512|ref|YP_007280008.1| - 1.8e-05 23.7 0.5 0.019 13.8 0.0 3.2 3 0 0 3 3 3 1 FAD binding domain DUF836 PF05768.9 gi|433590512|ref|YP_007280008.1| - 0.00022 21.4 0.1 0.00069 19.8 0.1 1.9 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) NAD_binding_7 PF13241.1 gi|433590512|ref|YP_007280008.1| - 0.00081 19.6 0.0 0.026 14.7 0.0 2.8 3 1 0 3 3 3 1 Putative NAD(P)-binding NAD_binding_8 PF13450.1 gi|433590512|ref|YP_007280008.1| - 0.0021 18.0 0.5 0.011 15.7 0.0 2.4 3 0 0 3 3 3 1 NAD(P)-binding Rossmann-like domain Thioredoxin_3 PF13192.1 gi|433590512|ref|YP_007280008.1| - 0.0025 17.6 0.2 0.026 14.3 0.0 2.7 3 0 0 3 3 3 1 Thioredoxin domain SH3BGR PF04908.10 gi|433590512|ref|YP_007280008.1| - 0.0029 17.5 0.1 0.0057 16.5 0.1 1.5 1 0 0 1 1 1 1 SH3-binding, glutamic acid-rich protein HI0933_like PF03486.9 gi|433590512|ref|YP_007280008.1| - 0.0032 16.0 0.5 0.71 8.2 0.0 2.8 4 0 0 4 4 4 2 HI0933-like protein GST_N_3 PF13417.1 gi|433590512|ref|YP_007280008.1| - 0.0041 17.3 0.0 0.0073 16.5 0.0 1.4 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain FAD_oxidored PF12831.2 gi|433590512|ref|YP_007280008.1| - 0.062 12.3 0.6 0.16 11.0 0.0 1.9 2 0 0 2 2 2 0 FAD dependent oxidoreductase ArsC PF03960.10 gi|433590512|ref|YP_007280008.1| - 0.082 12.9 0.0 0.2 11.7 0.0 1.7 1 0 0 1 1 1 0 ArsC family Thi4 PF01946.12 gi|433590512|ref|YP_007280008.1| - 0.089 11.8 0.1 0.98 8.4 0.0 2.3 2 0 0 2 2 2 0 Thi4 family Trp_halogenase PF04820.9 gi|433590512|ref|YP_007280008.1| - 0.1 11.2 2.0 6.5 5.2 0.1 2.8 3 0 0 3 3 3 0 Tryptophan halogenase GST_N_2 PF13409.1 gi|433590512|ref|YP_007280008.1| - 0.12 12.3 0.0 0.23 11.4 0.0 1.4 1 0 0 1 1 1 0 Glutathione S-transferase, N-terminal domain DUF357 PF04010.8 gi|433590513|ref|YP_007280009.1| - 2.7e-29 100.6 0.2 3.2e-29 100.4 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF357) TFIIB PF00382.14 gi|433590514|ref|YP_007280010.1| - 2.1e-41 139.5 0.2 1.2e-21 76.2 0.0 2.2 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|433590514|ref|YP_007280010.1| - 7.1e-17 60.4 3.4 2.6e-16 58.6 2.6 1.8 2 0 0 2 2 2 1 TFIIB zinc-binding Cyclin_C PF02984.14 gi|433590514|ref|YP_007280010.1| - 4.7e-05 23.2 0.0 0.0012 18.7 0.0 2.2 2 0 0 2 2 2 1 Cyclin, C-terminal domain DZR PF12773.2 gi|433590514|ref|YP_007280010.1| - 0.011 15.5 0.6 0.019 14.7 0.4 1.3 1 0 0 1 1 1 0 Double zinc ribbon OrfB_Zn_ribbon PF07282.6 gi|433590514|ref|YP_007280010.1| - 0.022 14.3 1.6 0.042 13.4 0.8 1.6 2 0 0 2 2 1 0 Putative transposase DNA-binding domain A2L_zn_ribbon PF08792.5 gi|433590514|ref|YP_007280010.1| - 0.08 12.4 0.6 0.14 11.6 0.4 1.4 1 0 0 1 1 1 0 A2L zinc ribbon domain Prok-RING_1 PF14446.1 gi|433590514|ref|YP_007280010.1| - 0.091 12.5 2.4 0.15 11.8 1.7 1.3 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 HTH_24 PF13412.1 gi|433590514|ref|YP_007280010.1| - 0.095 12.1 0.1 0.21 11.0 0.1 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Nudix_N_2 PF14803.1 gi|433590514|ref|YP_007280010.1| - 0.1 12.2 4.2 0.32 10.7 2.9 1.9 1 1 0 1 1 1 0 Nudix N-terminal Sigma70_r4 PF04545.11 gi|433590514|ref|YP_007280010.1| - 0.13 11.6 3.8 0.38 10.0 0.0 3.2 4 0 0 4 4 4 0 Sigma-70, region 4 UreF PF01730.11 gi|433590514|ref|YP_007280010.1| - 0.13 12.3 1.5 10 6.2 0.0 2.8 3 0 0 3 3 3 0 UreF zf-IS66 PF13005.2 gi|433590514|ref|YP_007280010.1| - 0.14 12.1 3.3 1.1 9.3 0.4 2.7 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 zf-C4_Topoisom PF01396.14 gi|433590514|ref|YP_007280010.1| - 0.17 11.4 0.2 0.3 10.5 0.1 1.4 1 0 0 1 1 1 0 Topoisomerase DNA binding C4 zinc finger zf-ribbon_3 PF13248.1 gi|433590514|ref|YP_007280010.1| - 0.17 11.1 3.1 0.36 10.1 2.1 1.6 1 1 0 1 1 1 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|433590514|ref|YP_007280010.1| - 1 9.3 5.8 2.7 8.0 0.6 2.4 1 1 1 2 2 2 0 Zinc ribbon domain DNA_ligase_ZBD PF03119.11 gi|433590514|ref|YP_007280010.1| - 4.2 7.1 6.6 0.5 10.1 1.3 2.0 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Lar_restr_allev PF14354.1 gi|433590514|ref|YP_007280010.1| - 5.1 7.4 6.3 0.58 10.5 1.1 1.9 2 0 0 2 2 1 0 Restriction alleviation protein Lar zinc_ribbon_4 PF13717.1 gi|433590515|ref|YP_007280011.1| - 3.7e-05 23.3 0.4 6.1e-05 22.6 0.3 1.4 1 1 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|433590515|ref|YP_007280011.1| - 4.1e-05 23.0 0.4 7.1e-05 22.3 0.3 1.4 1 1 0 1 1 1 1 zinc-ribbon domain NMD3 PF04981.8 gi|433590515|ref|YP_007280011.1| - 0.00038 19.6 0.2 0.0004 19.5 0.1 1.0 1 0 0 1 1 1 1 NMD3 family TF_Zn_Ribbon PF08271.7 gi|433590515|ref|YP_007280011.1| - 0.00081 18.6 0.5 0.063 12.6 0.1 2.1 2 0 0 2 2 2 1 TFIIB zinc-binding PhnA_Zn_Ribbon PF08274.7 gi|433590515|ref|YP_007280011.1| - 0.0013 18.4 2.1 0.22 11.3 0.1 2.2 2 0 0 2 2 2 2 PhnA Zinc-Ribbon RNHCP PF12647.2 gi|433590515|ref|YP_007280011.1| - 0.0058 16.4 0.6 0.0066 16.2 0.4 1.2 1 0 0 1 1 1 1 RNHCP domain DZR PF12773.2 gi|433590515|ref|YP_007280011.1| - 0.0073 16.1 2.1 0.021 14.6 1.4 1.7 1 1 0 1 1 1 1 Double zinc ribbon HypA PF01155.14 gi|433590515|ref|YP_007280011.1| - 0.0084 15.7 0.2 0.0086 15.7 0.2 1.1 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family Zn_Tnp_IS1 PF03811.8 gi|433590515|ref|YP_007280011.1| - 0.011 15.2 2.2 1.4 8.5 0.1 2.1 2 0 0 2 2 2 0 InsA N-terminal domain UPF0547 PF10571.4 gi|433590515|ref|YP_007280011.1| - 0.02 14.5 3.9 1.8 8.3 0.0 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zinc-ribbons_6 PF07191.7 gi|433590515|ref|YP_007280011.1| - 0.028 14.1 2.0 0.26 11.0 1.5 1.9 1 1 0 1 1 1 0 zinc-ribbons zf-CHY PF05495.7 gi|433590515|ref|YP_007280011.1| - 0.031 14.4 3.6 0.32 11.1 0.7 2.0 1 1 1 2 2 2 0 CHY zinc finger zf-ribbon_3 PF13248.1 gi|433590515|ref|YP_007280011.1| - 0.049 12.8 2.0 0.41 9.9 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-RING_4 PF14570.1 gi|433590515|ref|YP_007280011.1| - 0.065 12.8 0.5 6.6 6.3 0.1 2.3 2 0 0 2 2 2 0 RING/Ubox like zinc-binding domain zf-Di19 PF05605.7 gi|433590515|ref|YP_007280011.1| - 0.065 13.3 1.2 1.5 9.0 0.1 2.1 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding Stc1 PF12898.2 gi|433590515|ref|YP_007280011.1| - 0.073 13.1 0.4 0.08 13.0 0.3 1.1 1 0 0 1 1 1 0 Stc1 domain DUF329 PF03884.9 gi|433590515|ref|YP_007280011.1| - 0.078 12.5 1.1 4.8 6.8 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF329) DUF2296 PF10058.4 gi|433590515|ref|YP_007280011.1| - 0.088 12.5 0.2 0.12 12.1 0.1 1.3 1 0 0 1 1 1 0 Predicted integral membrane metal-binding protein (DUF2296) Sgf11 PF08209.6 gi|433590515|ref|YP_007280011.1| - 0.096 12.0 0.8 0.98 8.7 0.1 2.1 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) Cytochrom_C550 PF14495.1 gi|433590515|ref|YP_007280011.1| - 0.1 12.0 0.1 0.11 12.0 0.1 1.0 1 0 0 1 1 1 0 Cytochrome c-550 domain UPF0515 PF15135.1 gi|433590515|ref|YP_007280011.1| - 0.1 11.6 0.2 0.12 11.4 0.1 1.1 1 0 0 1 1 1 0 Uncharacterised protein UPF0515 TFIIS_C PF01096.13 gi|433590515|ref|YP_007280011.1| - 0.11 12.1 2.5 4.2 7.0 0.2 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-Mss51 PF13824.1 gi|433590515|ref|YP_007280011.1| - 0.14 12.0 4.0 0.25 11.2 2.9 1.4 1 1 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 DUF2614 PF11023.3 gi|433590515|ref|YP_007280011.1| - 0.16 11.8 0.7 1.9 8.3 0.1 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF2614) Ogr_Delta PF04606.7 gi|433590515|ref|YP_007280011.1| - 0.22 11.2 1.8 1.3 8.7 0.1 2.2 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger zf-TFIIB PF13453.1 gi|433590515|ref|YP_007280011.1| - 0.28 10.4 4.0 0.84 8.8 2.5 1.9 1 1 1 2 2 2 0 Transcription factor zinc-finger CpXC PF14353.1 gi|433590515|ref|YP_007280011.1| - 0.28 11.1 2.7 2.5 8.0 0.3 2.0 1 1 1 2 2 2 0 CpXC protein zf-DNL PF05180.7 gi|433590515|ref|YP_007280011.1| - 0.29 10.9 1.9 6.8 6.4 0.3 2.0 1 1 1 2 2 2 0 DNL zinc finger zf-RING_3 PF14369.1 gi|433590515|ref|YP_007280011.1| - 0.5 10.4 4.8 7.2 6.7 4.0 2.0 1 1 1 2 2 2 0 zinc-finger Zn_Tnp_IS1595 PF12760.2 gi|433590515|ref|YP_007280011.1| - 0.68 9.7 4.6 0.66 9.8 0.4 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|433590515|ref|YP_007280011.1| - 0.92 9.0 3.6 6.5 6.3 0.7 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Rubredoxin PF00301.15 gi|433590515|ref|YP_007280011.1| - 1 9.2 5.9 1.6 8.6 2.1 2.1 1 1 1 2 2 2 0 Rubredoxin UPF0058 PF01893.11 gi|433590516|ref|YP_007280012.1| - 9.8e-21 73.6 0.1 1.1e-20 73.4 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0058 NinB PF05772.7 gi|433590516|ref|YP_007280012.1| - 0.12 11.9 0.0 0.14 11.8 0.0 1.1 1 0 0 1 1 1 0 NinB protein DUF555 PF04475.7 gi|433590517|ref|YP_007280013.1| - 1.2e-37 127.9 0.0 1.6e-37 127.6 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF555) Myb_Cef PF11831.3 gi|433590517|ref|YP_007280013.1| - 0.046 12.9 4.4 0.065 12.4 3.0 1.2 1 0 0 1 1 1 0 pre-mRNA splicing factor component Cwf_Cwc_15 PF04889.7 gi|433590517|ref|YP_007280013.1| - 0.62 9.7 4.8 0.72 9.5 3.3 1.1 1 0 0 1 1 1 0 Cwf15/Cwc15 cell cycle control protein VEFS-Box PF09733.4 gi|433590517|ref|YP_007280013.1| - 2.3 7.8 4.6 3.5 7.2 3.2 1.4 1 0 0 1 1 1 0 VEFS-Box of polycomb protein OGG_N PF07934.7 gi|433590518|ref|YP_007280014.1| - 2.5e-17 62.9 0.0 3.5e-17 62.4 0.0 1.2 1 0 0 1 1 1 1 8-oxoguanine DNA glycosylase, N-terminal domain HhH-GPD PF00730.20 gi|433590518|ref|YP_007280014.1| - 2e-15 57.0 0.0 4e-15 56.0 0.0 1.5 2 0 0 2 2 2 1 HhH-GPD superfamily base excision DNA repair protein AlkA_N PF06029.6 gi|433590518|ref|YP_007280014.1| - 0.098 12.7 0.2 0.32 11.0 0.1 1.8 2 0 0 2 2 2 0 AlkA N-terminal domain DUF3784 PF12650.2 gi|433590519|ref|YP_007280015.1| - 6.7e-05 22.7 0.3 9e-05 22.3 0.2 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF3784) RseC_MucC PF04246.7 gi|433590519|ref|YP_007280015.1| - 0.07 12.7 2.7 0.097 12.2 0.2 1.9 2 0 0 2 2 2 0 Positive regulator of sigma(E), RseC/MucC DUF4231 PF14015.1 gi|433590519|ref|YP_007280015.1| - 0.074 13.0 1.1 0.23 11.4 0.8 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF4231) DUF3040 PF11239.3 gi|433590519|ref|YP_007280015.1| - 0.75 9.8 7.5 0.31 11.1 0.6 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3040) PMT_2 PF13231.1 gi|433590519|ref|YP_007280015.1| - 5.3 6.9 5.9 3 7.7 0.6 2.1 2 0 0 2 2 2 0 Dolichyl-phosphate-mannose-protein mannosyltransferase Acylphosphatase PF00708.13 gi|433590520|ref|YP_007280016.1| - 1.2e-27 95.8 0.0 1.3e-27 95.7 0.0 1.0 1 0 0 1 1 1 1 Acylphosphatase Carb_kinase PF01256.12 gi|433590523|ref|YP_007280019.1| - 2.9e-42 144.6 2.3 6.3e-42 143.5 1.6 1.5 1 0 0 1 1 1 1 Carbohydrate kinase YjeF_N PF03853.10 gi|433590523|ref|YP_007280019.1| - 1.2e-41 142.1 1.4 2.2e-41 141.3 0.9 1.5 1 0 0 1 1 1 1 YjeF-related protein N-terminus HK PF02110.10 gi|433590523|ref|YP_007280019.1| - 7.9e-08 31.7 0.1 1.7e-07 30.6 0.1 1.5 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family Phos_pyr_kin PF08543.7 gi|433590523|ref|YP_007280019.1| - 1.8e-07 30.6 0.1 3.3e-07 29.7 0.1 1.4 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase MoaC PF01967.16 gi|433590524|ref|YP_007280020.1| - 1.9e-45 153.8 0.7 2.2e-45 153.6 0.5 1.0 1 0 0 1 1 1 1 MoaC family CARDB PF07705.6 gi|433590525|ref|YP_007280021.1| - 4.6e-11 42.6 0.9 0.004 17.1 0.0 3.2 3 0 0 3 3 3 3 CARDB Transglut_C PF00927.17 gi|433590525|ref|YP_007280021.1| - 1.7e-07 31.2 0.0 0.00031 20.7 0.0 2.9 3 0 0 3 3 3 2 Transglutaminase family, C-terminal ig like domain DUF2393 PF09624.5 gi|433590525|ref|YP_007280021.1| - 0.097 12.1 0.0 0.2 11.1 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2393) BIV_Env PF05858.7 gi|433590525|ref|YP_007280021.1| - 0.17 9.8 0.0 0.24 9.3 0.0 1.1 1 0 0 1 1 1 0 Bovine immunodeficiency virus surface protein (SU) Cohesin PF00963.13 gi|433590525|ref|YP_007280021.1| - 2.3 8.1 7.3 5.6 6.8 0.0 3.7 4 0 0 4 4 4 0 Cohesin domain adh_short PF00106.20 gi|433590526|ref|YP_007280022.1| - 3.5e-44 150.6 0.5 4.8e-44 150.2 0.3 1.2 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|433590526|ref|YP_007280022.1| - 1e-25 90.8 0.2 1.2e-25 90.7 0.1 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|433590526|ref|YP_007280022.1| - 3e-24 85.6 0.2 4.3e-24 85.1 0.1 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|433590526|ref|YP_007280022.1| - 0.034 13.5 0.2 0.056 12.8 0.0 1.5 2 0 0 2 2 2 0 NAD dependent epimerase/dehydratase family Abhydrolase_1 PF00561.15 gi|433590527|ref|YP_007280023.1| - 6.8e-18 65.0 0.0 1.1e-17 64.3 0.0 1.3 1 0 0 1 1 1 1 alpha/beta hydrolase fold PhaC_N PF07167.8 gi|433590527|ref|YP_007280023.1| - 2.3e-15 56.4 0.1 3.7e-15 55.7 0.0 1.3 1 0 0 1 1 1 1 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus HHH_5 PF14520.1 gi|433590527|ref|YP_007280023.1| - 1.6e-12 47.3 1.8 4e-12 46.1 1.0 1.9 2 0 0 2 2 1 1 Helix-hairpin-helix domain Abhydrolase_6 PF12697.2 gi|433590527|ref|YP_007280023.1| - 3.5e-12 46.6 0.1 1.3e-11 44.8 0.0 1.9 2 0 0 2 2 2 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|433590527|ref|YP_007280023.1| - 2.5e-10 40.2 0.1 1.5e-06 27.9 0.0 2.7 3 0 0 3 3 2 2 Alpha/beta hydrolase family DUF3141 PF11339.3 gi|433590527|ref|YP_007280023.1| - 6.6e-08 31.3 0.0 4.4e-07 28.6 0.0 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF3141) DUF4332 PF14229.1 gi|433590527|ref|YP_007280023.1| - 1.7e-06 28.0 0.3 0.00081 19.3 0.2 3.2 2 1 0 2 2 2 1 Domain of unknown function (DUF4332) DLH PF01738.13 gi|433590527|ref|YP_007280023.1| - 2.1e-05 23.9 0.1 0.0075 15.5 0.0 3.2 2 1 1 3 3 3 1 Dienelactone hydrolase family Cdd1 PF11731.3 gi|433590527|ref|YP_007280023.1| - 0.0015 18.3 0.0 0.017 15.0 0.0 2.3 2 0 0 2 2 2 1 Pathogenicity locus PHB_depo_C PF06850.6 gi|433590527|ref|YP_007280023.1| - 0.0026 17.0 0.0 0.0056 15.9 0.0 1.6 1 0 0 1 1 1 1 PHB de-polymerase C-terminus DUF2048 PF09752.4 gi|433590527|ref|YP_007280023.1| - 0.0031 16.4 0.1 0.0098 14.8 0.0 1.7 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2048) TfoX_C PF04994.8 gi|433590527|ref|YP_007280023.1| - 0.013 15.4 0.0 0.023 14.5 0.0 1.4 1 0 0 1 1 1 0 TfoX C-terminal domain FSH1 PF03959.8 gi|433590527|ref|YP_007280023.1| - 0.057 12.8 0.0 7 6.0 0.0 2.2 2 0 0 2 2 2 0 Serine hydrolase (FSH1) DNA_pol_lambd_f PF10391.4 gi|433590527|ref|YP_007280023.1| - 0.1 12.1 0.0 0.27 10.8 0.0 1.8 1 0 0 1 1 1 0 Fingers domain of DNA polymerase lambda HTH_Tnp_ISL3 PF13542.1 gi|433590527|ref|YP_007280023.1| - 0.11 11.6 0.0 0.24 10.6 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_28 PF13518.1 gi|433590527|ref|YP_007280023.1| - 0.13 12.2 0.0 0.32 11.0 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain PHA_synth_III_E PF09712.5 gi|433590528|ref|YP_007280024.1| - 1.3e-09 37.8 1.2 1.3e-09 37.8 0.9 2.2 1 1 1 2 2 2 1 Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E) Phasin PF05597.6 gi|433590528|ref|YP_007280024.1| - 0.0017 18.1 4.8 0.0033 17.1 1.8 2.2 1 1 1 2 2 2 1 Poly(hydroxyalcanoate) granule associated protein (phasin) FliD_C PF07195.7 gi|433590528|ref|YP_007280024.1| - 0.044 13.0 0.1 0.12 11.6 0.1 1.7 1 1 0 1 1 1 0 Flagellar hook-associated protein 2 C-terminus DUF1825 PF08855.5 gi|433590528|ref|YP_007280024.1| - 0.047 13.6 0.2 0.35 10.8 0.0 2.2 2 1 0 2 2 2 0 Domain of unknown function (DUF1825) 5_nucleotid_C PF02872.13 gi|433590528|ref|YP_007280024.1| - 0.076 12.9 0.2 0.13 12.1 0.0 1.5 2 0 0 2 2 2 0 5'-nucleotidase, C-terminal domain BAR PF03114.13 gi|433590528|ref|YP_007280024.1| - 0.093 12.2 3.4 0.62 9.5 2.0 2.0 1 1 0 1 1 1 0 BAR domain Phage_Gp23 PF10669.4 gi|433590528|ref|YP_007280024.1| - 0.11 12.6 3.9 1.2 9.2 0.0 2.7 1 1 2 3 3 3 0 Protein gp23 (Bacteriophage A118) Mating_N PF12731.2 gi|433590528|ref|YP_007280024.1| - 0.13 12.1 3.4 0.56 10.1 0.2 3.0 2 2 1 3 3 3 0 Mating-type protein beta 1 DUF1079 PF06435.6 gi|433590528|ref|YP_007280024.1| - 0.16 11.9 0.7 0.49 10.3 0.1 2.1 2 0 0 2 2 2 0 Repeat of unknown function (DUF1079) DUF4083 PF13314.1 gi|433590528|ref|YP_007280024.1| - 0.2 11.5 2.1 0.24 11.2 0.5 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4083) CHASE3 PF05227.8 gi|433590528|ref|YP_007280024.1| - 0.34 10.5 6.0 0.31 10.6 0.3 2.2 1 1 1 2 2 2 0 CHASE3 domain DUF445 PF04286.7 gi|433590528|ref|YP_007280024.1| - 0.67 9.4 4.7 4.8 6.6 3.2 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF445) FliE PF02049.13 gi|433590528|ref|YP_007280024.1| - 0.74 9.8 5.1 0.45 10.5 0.5 2.7 1 1 1 3 3 3 0 Flagellar hook-basal body complex protein FliE DUF3552 PF12072.3 gi|433590528|ref|YP_007280024.1| - 2.4 7.3 6.9 0.71 9.0 0.7 2.3 1 1 0 2 2 2 0 Domain of unknown function (DUF3552) NYD-SP28 PF14772.1 gi|433590528|ref|YP_007280024.1| - 2.6 8.1 6.6 0.29 11.2 0.6 2.2 2 1 0 2 2 2 0 Sperm tail Nsp1_C PF05064.8 gi|433590528|ref|YP_007280024.1| - 7.4 6.2 10.0 1.5 8.4 0.1 2.7 2 2 0 2 2 2 0 Nsp1-like C-terminal region Apolipoprotein PF01442.13 gi|433590529|ref|YP_007280025.1| - 0.009 15.5 3.9 0.17 11.3 1.0 2.2 1 1 1 2 2 2 2 Apolipoprotein A1/A4/E domain PMEI PF04043.10 gi|433590529|ref|YP_007280025.1| - 0.037 13.9 5.6 0.23 11.3 3.9 1.9 1 1 0 1 1 1 0 Plant invertase/pectin methylesterase inhibitor RasGAP_C PF03836.10 gi|433590529|ref|YP_007280025.1| - 0.055 13.1 0.1 0.58 9.8 0.0 2.0 2 0 0 2 2 2 0 RasGAP C-terminus Alpha-2-MRAP_C PF06401.6 gi|433590529|ref|YP_007280025.1| - 0.078 12.8 0.7 0.092 12.5 0.5 1.2 1 0 0 1 1 1 0 Alpha-2-macroglobulin RAP, C-terminal domain DUF2746 PF10874.3 gi|433590529|ref|YP_007280025.1| - 0.084 13.0 0.3 15 5.9 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2746) DUF1664 PF07889.7 gi|433590529|ref|YP_007280025.1| - 0.22 11.2 0.9 0.64 9.8 0.2 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) Phasin_2 PF09361.5 gi|433590529|ref|YP_007280025.1| - 0.59 10.1 17.9 2.8 8.0 1.0 3.2 1 1 2 3 3 3 0 Phasin protein Mog1 PF04603.7 gi|433590529|ref|YP_007280025.1| - 0.87 9.5 5.3 0.38 10.6 1.5 1.8 1 1 1 2 2 2 0 Ran-interacting Mog1 protein ISG65-75 PF11727.3 gi|433590529|ref|YP_007280025.1| - 2.8 6.9 6.4 2.2 7.2 1.9 1.9 1 1 2 3 3 3 0 Invariant surface glycoprotein Snf7 PF03357.16 gi|433590529|ref|YP_007280025.1| - 3.1 7.1 9.4 0.64 9.3 3.2 1.9 1 1 1 2 2 2 0 Snf7 FUSC PF04632.7 gi|433590529|ref|YP_007280025.1| - 3.2 6.0 5.9 4.2 5.6 4.1 1.2 1 0 0 1 1 1 0 Fusaric acid resistance protein family Tape_meas_lam_C PF09718.5 gi|433590529|ref|YP_007280025.1| - 3.3 7.6 9.7 6.4 6.7 0.2 3.5 1 1 3 4 4 4 0 Lambda phage tail tape-measure protein (Tape_meas_lam_C) Antitoxin-MazE PF04014.13 gi|433590530|ref|YP_007280026.1| - 0.01 15.5 0.5 0.016 14.9 0.4 1.2 1 0 0 1 1 1 0 Antidote-toxin recognition MazE MaoC_dehydratas PF01575.14 gi|433590531|ref|YP_007280027.1| - 1.8e-24 85.4 0.0 3.2e-24 84.6 0.0 1.4 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.1 gi|433590531|ref|YP_007280027.1| - 1.3e-07 31.4 0.0 4.4e-07 29.7 0.0 2.0 1 1 0 1 1 1 1 N-terminal half of MaoC dehydratase PGM_PMM_I PF02878.11 gi|433590532|ref|YP_007280028.1| - 9.9e-31 106.0 0.1 5.7e-30 103.5 0.0 2.0 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.11 gi|433590532|ref|YP_007280028.1| - 7.1e-21 74.4 0.1 7.1e-21 74.4 0.1 2.5 3 1 0 3 3 3 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.15 gi|433590532|ref|YP_007280028.1| - 3e-10 39.9 0.0 9.6e-10 38.3 0.0 1.9 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain PGM_PMM_III PF02880.11 gi|433590532|ref|YP_007280028.1| - 0.0015 18.5 0.0 0.0042 17.1 0.0 1.8 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III dCMP_cyt_deam_1 PF00383.17 gi|433590533|ref|YP_007280029.1| - 8.8e-17 60.6 0.2 1.1e-16 60.3 0.2 1.1 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region dCMP_cyt_deam_2 PF08211.6 gi|433590533|ref|YP_007280029.1| - 4.2e-12 46.1 0.3 5.6e-12 45.7 0.2 1.2 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region MafB19-deam PF14437.1 gi|433590533|ref|YP_007280029.1| - 0.014 15.0 0.4 0.032 13.8 0.3 1.6 1 1 0 1 1 1 0 MafB19-like deaminase Fer2_4 PF13510.1 gi|433590533|ref|YP_007280029.1| - 0.037 13.8 0.3 0.075 12.8 0.2 1.5 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain Pentapeptide PF00805.17 gi|433590533|ref|YP_007280029.1| - 0.075 12.2 0.2 0.12 11.6 0.1 1.3 1 0 0 1 1 1 0 Pentapeptide repeats (8 copies) YwqJ-deaminase PF14431.1 gi|433590533|ref|YP_007280029.1| - 0.12 12.2 0.6 0.51 10.2 0.4 1.9 1 1 1 2 2 2 0 YwqJ-like deaminase DUF488 PF04343.8 gi|433590534|ref|YP_007280030.1| - 2.3e-09 37.6 0.9 9.4e-09 35.6 0.6 1.9 1 1 0 1 1 1 1 Protein of unknown function, DUF488 PNP_UDP_1 PF01048.15 gi|433590535|ref|YP_007280031.1| - 1.2e-48 165.1 2.3 1.4e-48 164.8 1.6 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily MS_channel PF00924.13 gi|433590536|ref|YP_007280032.1| - 5.1e-17 61.8 3.0 5.1e-17 61.8 2.1 1.7 2 0 0 2 2 2 1 Mechanosensitive ion channel TM_helix PF05552.7 gi|433590536|ref|YP_007280032.1| - 4e-05 23.1 13.4 5.3e-05 22.8 0.1 3.4 3 1 0 3 3 3 2 Conserved TM helix DUF443 PF04276.7 gi|433590536|ref|YP_007280032.1| - 0.0065 15.9 7.6 0.01 15.3 5.3 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF443) DisA_N PF02457.11 gi|433590537|ref|YP_007280033.1| - 7.4e-26 89.6 0.0 1.2e-25 88.9 0.0 1.4 1 0 0 1 1 1 1 DisA bacterial checkpoint controller nucleotide-binding TFIIB PF00382.14 gi|433590539|ref|YP_007280035.1| - 1.5e-06 27.9 0.1 3.1e-06 26.8 0.1 1.5 1 1 0 1 1 1 1 Transcription factor TFIIB repeat Leptin PF02024.10 gi|433590539|ref|YP_007280035.1| - 0.0082 15.8 0.1 0.01 15.4 0.0 1.1 1 0 0 1 1 1 1 Leptin Nuc_N PF14448.1 gi|433590539|ref|YP_007280035.1| - 0.044 13.3 0.0 0.065 12.7 0.0 1.2 1 0 0 1 1 1 0 Nuclease N terminal HTH_23 PF13384.1 gi|433590539|ref|YP_007280035.1| - 0.046 13.3 0.1 0.098 12.3 0.0 1.6 2 0 0 2 2 2 0 Homeodomain-like domain CTP_transf_2 PF01467.21 gi|433590540|ref|YP_007280036.1| - 1.3e-12 48.0 0.0 2e-11 44.2 0.0 2.0 1 1 0 1 1 1 1 Cytidylyltransferase FAD_syn PF06574.7 gi|433590540|ref|YP_007280036.1| - 0.0043 16.7 0.0 0.021 14.4 0.0 2.0 2 0 0 2 2 2 1 FAD synthetase PTA_PTB PF01515.14 gi|433590541|ref|YP_007280037.1| - 2.1e-92 309.5 0.0 2.9e-92 309.1 0.0 1.2 1 0 0 1 1 1 1 Phosphate acetyl/butaryl transferase Malic_M PF03949.10 gi|433590541|ref|YP_007280037.1| - 7.9e-70 235.3 0.4 7.9e-70 235.3 0.3 1.6 2 0 0 2 2 2 1 Malic enzyme, NAD binding domain malic PF00390.14 gi|433590541|ref|YP_007280037.1| - 5.9e-30 104.1 0.0 2e-27 95.9 0.0 2.6 1 1 0 1 1 1 1 Malic enzyme, N-terminal domain HTH_31 PF13560.1 gi|433590541|ref|YP_007280037.1| - 0.07 13.3 0.0 0.21 11.8 0.0 1.9 1 0 0 1 1 1 0 Helix-turn-helix domain PQQ_3 PF13570.1 gi|433590542|ref|YP_007280038.1| - 5.6e-41 137.6 35.5 5.5e-09 36.0 0.9 9.2 8 1 0 8 8 8 7 PQQ-like domain PQQ_2 PF13360.1 gi|433590542|ref|YP_007280038.1| - 2.5e-34 118.7 10.2 7e-16 58.4 2.4 3.9 1 1 1 3 3 3 3 PQQ-like domain PQQ PF01011.16 gi|433590542|ref|YP_007280038.1| - 2.2e-31 105.8 19.1 8.1e-06 25.1 0.0 7.6 8 0 0 8 8 8 5 PQQ enzyme repeat Neisseria_PilC PF05567.6 gi|433590542|ref|YP_007280038.1| - 0.037 13.0 0.5 1.1 8.1 0.1 2.3 2 0 0 2 2 2 0 Neisseria PilC beta-propeller domain WD40 PF00400.27 gi|433590542|ref|YP_007280038.1| - 0.2 11.5 2.9 1.1 9.2 0.1 3.5 4 0 0 4 4 4 0 WD domain, G-beta repeat Ribosomal_S8e PF01201.17 gi|433590543|ref|YP_007280039.1| - 1.6e-34 118.9 4.2 1.7e-34 118.7 2.9 1.0 1 0 0 1 1 1 1 Ribosomal protein S8e PhoU PF01895.14 gi|433590544|ref|YP_007280040.1| - 3.6e-20 72.1 7.7 2.1e-15 56.9 1.6 2.3 2 0 0 2 2 2 2 PhoU domain Antitoxin-MazE PF04014.13 gi|433590544|ref|YP_007280040.1| - 5.2e-10 38.8 0.0 1.1e-09 37.8 0.0 1.6 1 0 0 1 1 1 1 Antidote-toxin recognition MazE PP_kinase_C PF13090.1 gi|433590546|ref|YP_007280042.1| - 4.3e-153 509.0 0.0 6.2e-153 508.5 0.0 1.2 1 0 0 1 1 1 1 Polyphosphate kinase C-terminal domain PP_kinase PF02503.12 gi|433590546|ref|YP_007280042.1| - 1.7e-63 213.8 4.0 3.2e-63 212.9 2.7 1.5 1 0 0 1 1 1 1 Polyphosphate kinase middle domain PP_kinase_N PF13089.1 gi|433590546|ref|YP_007280042.1| - 9.2e-37 125.4 0.0 2.6e-36 124.0 0.0 1.8 1 0 0 1 1 1 1 Polyphosphate kinase N-terminal domain PLDc_2 PF13091.1 gi|433590546|ref|YP_007280042.1| - 6.4e-12 45.3 0.0 3.4e-05 23.5 0.0 2.4 2 0 0 2 2 2 2 PLD-like domain Tnp_DNA_bind PF14706.1 gi|433590546|ref|YP_007280042.1| - 0.26 11.0 1.7 1.4 8.7 0.1 2.5 2 0 0 2 2 2 0 Transposase DNA-binding Metallophos PF00149.23 gi|433590547|ref|YP_007280043.1| - 3e-11 43.0 0.0 6.2e-11 42.0 0.0 1.7 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.2 gi|433590547|ref|YP_007280043.1| - 2.3e-10 40.5 0.0 5e-10 39.4 0.0 1.5 2 0 0 2 2 2 1 Calcineurin-like phosphoesterase superfamily domain Metallophos_3 PF14582.1 gi|433590547|ref|YP_007280043.1| - 0.17 10.9 0.0 0.23 10.5 0.0 1.2 1 0 0 1 1 1 0 Metallophosphoesterase, calcineurin superfamily RibD_C PF01872.12 gi|433590548|ref|YP_007280044.1| - 8.4e-51 172.4 0.1 9.3e-51 172.2 0.1 1.0 1 0 0 1 1 1 1 RibD C-terminal domain ECH PF00378.15 gi|433590549|ref|YP_007280045.1| - 5.7e-67 225.3 0.2 6.4e-67 225.2 0.2 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family SDH_sah PF01972.11 gi|433590549|ref|YP_007280045.1| - 0.00057 18.7 0.0 0.00084 18.1 0.0 1.2 1 0 0 1 1 1 1 Serine dehydrogenase proteinase ECH_C PF13766.1 gi|433590549|ref|YP_007280045.1| - 0.084 13.0 0.0 0.19 11.8 0.0 1.6 1 0 0 1 1 1 0 2-enoyl-CoA Hydratase C-terminal region PMSR PF01625.16 gi|433590550|ref|YP_007280046.1| - 2.4e-66 222.4 0.6 2.9e-66 222.1 0.4 1.1 1 0 0 1 1 1 1 Peptide methionine sulfoxide reductase DNA_methylase PF00145.12 gi|433590552|ref|YP_007280048.1| - 1.8e-53 181.8 0.0 3.5e-53 180.8 0.0 1.5 1 1 0 1 1 1 1 C-5 cytosine-specific DNA methylase HTH_29 PF13551.1 gi|433590553|ref|YP_007280049.1| - 0.057 13.5 2.1 0.25 11.5 0.0 3.0 4 0 0 4 4 4 0 Winged helix-turn helix DAO PF01266.19 gi|433590554|ref|YP_007280050.1| - 3e-61 207.3 11.1 3.6e-61 207.0 7.7 1.1 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|433590554|ref|YP_007280050.1| - 2.2e-10 40.1 4.9 4.9e-10 38.9 3.4 1.6 1 1 0 1 1 1 1 FAD binding domain FAD_oxidored PF12831.2 gi|433590554|ref|YP_007280050.1| - 9e-10 38.1 3.3 1.2e-09 37.8 2.3 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|433590554|ref|YP_007280050.1| - 7.5e-08 31.6 7.2 1e-07 31.2 5.0 1.1 1 0 0 1 1 1 1 FAD binding domain NAD_binding_8 PF13450.1 gi|433590554|ref|YP_007280050.1| - 5.2e-05 23.1 2.1 0.00024 21.0 1.2 2.3 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.1 gi|433590554|ref|YP_007280050.1| - 6.9e-05 23.0 0.1 0.0093 16.0 0.0 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.13 gi|433590554|ref|YP_007280050.1| - 8.6e-05 22.2 0.3 0.00017 21.3 0.1 1.6 2 0 0 2 2 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox_2 PF07992.9 gi|433590554|ref|YP_007280050.1| - 9e-05 22.4 0.7 0.0002 21.3 0.5 1.8 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|433590554|ref|YP_007280050.1| - 0.00016 22.0 0.8 0.00079 19.7 0.8 1.9 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_7 PF13241.1 gi|433590554|ref|YP_007280050.1| - 0.00027 21.1 0.0 0.00082 19.5 0.0 1.8 1 0 0 1 1 1 1 Putative NAD(P)-binding HI0933_like PF03486.9 gi|433590554|ref|YP_007280050.1| - 0.001 17.6 0.4 0.08 11.3 0.4 2.1 2 0 0 2 2 2 1 HI0933-like protein ApbA PF02558.11 gi|433590554|ref|YP_007280050.1| - 0.0023 17.3 0.5 0.0043 16.5 0.4 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA TrkA_N PF02254.13 gi|433590554|ref|YP_007280050.1| - 0.016 15.1 0.1 0.057 13.4 0.1 1.8 2 0 0 2 2 2 0 TrkA-N domain NAD_binding_10 PF13460.1 gi|433590554|ref|YP_007280050.1| - 0.019 14.9 4.4 0.024 14.6 1.4 2.2 2 1 0 2 2 2 0 NADH(P)-binding GIDA PF01134.17 gi|433590554|ref|YP_007280050.1| - 0.022 13.6 3.2 0.087 11.6 0.8 2.0 2 0 0 2 2 2 0 Glucose inhibited division protein A Shikimate_DH PF01488.15 gi|433590554|ref|YP_007280050.1| - 0.028 14.5 0.2 0.056 13.5 0.2 1.5 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase PALP PF00291.20 gi|433590554|ref|YP_007280050.1| - 0.031 13.5 2.1 0.076 12.2 1.3 1.7 1 1 1 2 2 2 0 Pyridoxal-phosphate dependent enzyme ThiF PF00899.16 gi|433590554|ref|YP_007280050.1| - 0.051 13.3 1.0 0.11 12.3 0.7 1.5 1 0 0 1 1 1 0 ThiF family Thi4 PF01946.12 gi|433590554|ref|YP_007280050.1| - 0.08 12.0 1.3 0.15 11.1 0.2 1.9 2 0 0 2 2 2 0 Thi4 family Saccharop_dh PF03435.13 gi|433590554|ref|YP_007280050.1| - 0.091 11.7 0.9 0.16 10.9 0.6 1.4 1 0 0 1 1 1 0 Saccharopine dehydrogenase Amino_oxidase PF01593.19 gi|433590554|ref|YP_007280050.1| - 0.093 11.7 5.0 2.6 6.9 0.1 3.0 3 0 0 3 3 3 0 Flavin containing amine oxidoreductase NAD_binding_9 PF13454.1 gi|433590554|ref|YP_007280050.1| - 0.15 11.8 1.6 0.6 9.8 0.3 2.3 2 0 0 2 2 2 0 FAD-NAD(P)-binding NAD_Gly3P_dh_N PF01210.18 gi|433590554|ref|YP_007280050.1| - 0.17 11.6 0.2 0.33 10.6 0.1 1.4 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus K_oxygenase PF13434.1 gi|433590554|ref|YP_007280050.1| - 0.25 10.2 0.1 0.57 9.0 0.0 1.5 2 0 0 2 2 2 0 L-lysine 6-monooxygenase (NADPH-requiring) Trp_halogenase PF04820.9 gi|433590554|ref|YP_007280050.1| - 0.29 9.7 1.1 1.7 7.1 0.4 2.0 2 0 0 2 2 2 0 Tryptophan halogenase Lycopene_cycl PF05834.7 gi|433590554|ref|YP_007280050.1| - 0.47 9.3 2.0 0.56 9.0 0.4 1.8 2 0 0 2 2 2 0 Lycopene cyclase protein HTH_20 PF12840.2 gi|433590555|ref|YP_007280051.1| - 5.8e-07 29.2 0.1 9e-07 28.6 0.1 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|433590555|ref|YP_007280051.1| - 4.8e-06 26.0 0.0 7.3e-06 25.4 0.0 1.2 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.14 gi|433590555|ref|YP_007280051.1| - 9.7e-05 22.0 0.0 0.00014 21.5 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.15 gi|433590555|ref|YP_007280051.1| - 0.00051 19.6 0.0 0.00077 19.0 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|433590555|ref|YP_007280051.1| - 0.019 14.6 0.1 0.028 14.0 0.1 1.3 1 0 0 1 1 1 0 MarR family HTH_7 PF02796.10 gi|433590555|ref|YP_007280051.1| - 0.075 12.9 0.0 0.13 12.1 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase CobA_CobO_BtuR PF02572.10 gi|433590556|ref|YP_007280052.1| - 4.2e-55 185.9 0.0 5.3e-55 185.6 0.0 1.1 1 0 0 1 1 1 1 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP HTH_10 PF04967.7 gi|433590557|ref|YP_007280053.1| - 1.1e-15 56.8 0.0 1.8e-15 56.2 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4 PF04545.11 gi|433590557|ref|YP_007280053.1| - 6e-07 28.6 0.3 1.4e-06 27.5 0.2 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_3 PF01381.17 gi|433590557|ref|YP_007280053.1| - 0.0023 17.7 0.1 0.0049 16.6 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix HTH_AsnC-type PF13404.1 gi|433590557|ref|YP_007280053.1| - 0.0085 15.6 0.1 0.019 14.4 0.0 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|433590557|ref|YP_007280053.1| - 0.03 13.8 0.1 0.38 10.2 0.1 2.3 1 1 0 1 1 1 0 Sigma-70, region 4 MarR_2 PF12802.2 gi|433590557|ref|YP_007280053.1| - 0.03 13.9 0.0 0.063 12.9 0.0 1.6 1 0 0 1 1 1 0 MarR family HTH_24 PF13412.1 gi|433590557|ref|YP_007280053.1| - 0.035 13.4 0.0 0.065 12.6 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_11 PF08279.7 gi|433590557|ref|YP_007280053.1| - 0.055 13.1 0.0 0.11 12.1 0.0 1.4 1 0 0 1 1 1 0 HTH domain ABC_tran PF00005.22 gi|433590559|ref|YP_007280055.1| - 1e-27 97.0 0.0 1.9e-27 96.2 0.0 1.4 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.1 gi|433590559|ref|YP_007280055.1| - 1e-13 51.9 0.0 4.6e-09 36.6 0.0 2.1 1 1 0 2 2 2 2 AAA domain AAA_13 PF13166.1 gi|433590559|ref|YP_007280055.1| - 4.7e-05 22.0 0.0 0.036 12.5 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|433590559|ref|YP_007280055.1| - 0.0004 19.5 0.0 0.0018 17.3 0.0 1.8 2 0 0 2 2 2 1 AAA ATPase domain AAA PF00004.24 gi|433590559|ref|YP_007280055.1| - 0.0056 16.8 0.2 0.084 13.0 0.2 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_23 PF13476.1 gi|433590559|ref|YP_007280055.1| - 0.018 15.3 0.0 0.03 14.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain ArgK PF03308.11 gi|433590559|ref|YP_007280055.1| - 0.03 13.0 0.0 0.05 12.3 0.0 1.3 1 0 0 1 1 1 0 ArgK protein DUF258 PF03193.11 gi|433590559|ref|YP_007280055.1| - 0.045 12.9 0.0 0.073 12.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_30 PF13604.1 gi|433590559|ref|YP_007280055.1| - 0.05 13.1 0.0 0.51 9.8 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.1 gi|433590559|ref|YP_007280055.1| - 0.054 12.9 0.4 0.71 9.2 0.3 2.2 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|433590559|ref|YP_007280055.1| - 0.058 13.3 1.1 0.78 9.6 0.7 2.3 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|433590559|ref|YP_007280055.1| - 0.065 12.7 0.0 0.12 11.9 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|433590559|ref|YP_007280055.1| - 0.066 13.1 0.1 0.24 11.3 0.0 2.0 1 1 1 2 2 2 0 AAA ATPase domain SMC_N PF02463.14 gi|433590559|ref|YP_007280055.1| - 0.15 11.2 0.0 5.7 6.1 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain DUF3098 PF11297.3 gi|433590560|ref|YP_007280056.1| - 0.17 11.6 7.2 27 4.5 0.0 4.0 3 0 0 3 3 3 0 Protein of unknown function (DUF3098) HTH_20 PF12840.2 gi|433590561|ref|YP_007280057.1| - 4.5e-05 23.1 0.3 0.00012 21.7 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|433590561|ref|YP_007280057.1| - 0.003 17.1 0.0 0.0073 15.9 0.0 1.6 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|433590561|ref|YP_007280057.1| - 0.021 14.4 0.2 0.043 13.4 0.2 1.5 1 0 0 1 1 1 0 MarR family HTH_27 PF13463.1 gi|433590561|ref|YP_007280057.1| - 0.03 14.6 0.0 0.08 13.2 0.0 2.0 1 1 0 1 1 1 0 Winged helix DNA-binding domain DUF2513 PF10711.4 gi|433590561|ref|YP_007280057.1| - 0.12 12.4 0.0 0.17 12.0 0.0 1.4 1 1 0 1 1 1 0 Hypothetical protein (DUF2513) GntR PF00392.16 gi|433590561|ref|YP_007280057.1| - 0.15 11.4 0.8 0.34 10.3 0.1 2.1 2 1 0 2 2 2 0 Bacterial regulatory proteins, gntR family GATase_3 PF07685.9 gi|433590563|ref|YP_007280059.1| - 7.9e-35 119.7 0.0 1.8e-34 118.6 0.0 1.6 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.18 gi|433590563|ref|YP_007280059.1| - 2.5e-26 92.2 0.0 3.7e-26 91.7 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.1 gi|433590563|ref|YP_007280059.1| - 1.9e-18 66.7 0.0 3.9e-18 65.7 0.0 1.5 1 1 0 1 1 1 1 AAA domain MobB PF03205.9 gi|433590563|ref|YP_007280059.1| - 0.049 13.3 0.0 0.32 10.6 0.0 2.1 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B MTH865 PF07747.6 gi|433590565|ref|YP_007280061.1| - 4.6e-22 77.4 0.0 5.4e-22 77.2 0.0 1.0 1 0 0 1 1 1 1 MTH865-like family HTH_10 PF04967.7 gi|433590566|ref|YP_007280062.1| - 6.9e-19 67.1 0.1 7.2e-18 63.9 0.0 2.8 3 0 0 3 3 3 1 HTH DNA binding domain PAS_4 PF08448.5 gi|433590566|ref|YP_007280062.1| - 8.9e-16 57.8 8.1 4.7e-15 55.5 1.4 3.7 3 0 0 3 3 3 1 PAS fold GAF_2 PF13185.1 gi|433590566|ref|YP_007280062.1| - 9.4e-14 52.1 0.2 4.4e-13 49.9 0.1 2.2 1 0 0 1 1 1 1 GAF domain PAS_9 PF13426.1 gi|433590566|ref|YP_007280062.1| - 2.4e-07 31.0 0.3 7.6e-07 29.4 0.1 2.1 2 0 0 2 2 2 1 PAS domain GAF PF01590.21 gi|433590566|ref|YP_007280062.1| - 8.3e-07 29.2 0.4 6.5e-06 26.3 0.0 2.4 2 0 0 2 2 2 1 GAF domain GAF_3 PF13492.1 gi|433590566|ref|YP_007280062.1| - 3e-06 27.3 0.0 1.1e-05 25.5 0.0 2.0 1 0 0 1 1 1 1 GAF domain Sigma70_r4_2 PF08281.7 gi|433590566|ref|YP_007280062.1| - 0.00041 19.7 0.0 0.0022 17.4 0.0 2.2 1 1 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4 PF04545.11 gi|433590566|ref|YP_007280062.1| - 0.00047 19.4 0.0 0.0018 17.5 0.0 2.1 2 0 0 2 2 2 1 Sigma-70, region 4 Autoind_bind PF03472.10 gi|433590566|ref|YP_007280062.1| - 0.023 13.9 0.3 0.075 12.3 0.0 2.0 2 0 0 2 2 2 0 Autoinducer binding domain Response_reg PF00072.19 gi|433590566|ref|YP_007280062.1| - 0.026 14.5 0.0 0.075 13.0 0.0 1.7 1 0 0 1 1 1 0 Response regulator receiver domain HTH_5 PF01022.15 gi|433590566|ref|YP_007280062.1| - 0.07 12.8 0.0 0.18 11.4 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Trypan_glycop PF00913.14 gi|433590566|ref|YP_007280062.1| - 0.93 8.3 3.3 0.29 10.0 0.2 1.6 2 0 0 2 2 2 0 Trypanosome variant surface glycoprotein (A-type) Peptidase_M10 PF00413.19 gi|433590567|ref|YP_007280063.1| - 0.00033 20.3 0.0 0.00035 20.3 0.0 1.2 1 0 0 1 1 1 1 Matrixin Peptidase_M66 PF10462.4 gi|433590567|ref|YP_007280063.1| - 0.0034 16.3 0.1 0.0049 15.7 0.0 1.1 1 0 0 1 1 1 1 Peptidase M66 Metallopep PF12044.3 gi|433590567|ref|YP_007280063.1| - 0.0058 15.1 0.4 0.0081 14.6 0.3 1.1 1 0 0 1 1 1 1 Putative peptidase family Astacin PF01400.19 gi|433590567|ref|YP_007280063.1| - 0.0088 15.4 0.1 0.025 13.9 0.1 1.6 2 0 0 2 2 2 1 Astacin (Peptidase family M12A) Reprolysin_4 PF13583.1 gi|433590567|ref|YP_007280063.1| - 0.019 14.4 0.1 0.026 14.0 0.1 1.2 1 0 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like Reprolysin_5 PF13688.1 gi|433590567|ref|YP_007280063.1| - 0.024 14.5 0.8 0.035 14.0 0.5 1.2 1 0 0 1 1 1 0 Metallo-peptidase family M12 Reprolysin_3 PF13582.1 gi|433590567|ref|YP_007280063.1| - 0.032 14.7 0.3 0.054 14.0 0.2 1.4 1 0 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like Peptidase_M50 PF02163.17 gi|433590567|ref|YP_007280063.1| - 0.085 11.8 0.0 0.11 11.4 0.0 1.2 1 0 0 1 1 1 0 Peptidase family M50 Peptidase_M43 PF05572.8 gi|433590567|ref|YP_007280063.1| - 0.13 11.8 0.0 0.2 11.2 0.0 1.2 1 0 0 1 1 1 0 Pregnancy-associated plasma protein-A Peptidase_M54 PF07998.6 gi|433590567|ref|YP_007280063.1| - 0.14 11.9 0.3 0.23 11.2 0.2 1.3 1 0 0 1 1 1 0 Peptidase family M54 HTH_24 PF13412.1 gi|433590568|ref|YP_007280064.1| - 2.3e-06 26.8 0.0 3.1e-06 26.4 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|433590568|ref|YP_007280064.1| - 0.0006 19.4 0.0 0.00085 18.9 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_45 PF14947.1 gi|433590568|ref|YP_007280064.1| - 0.0035 17.1 0.0 0.005 16.6 0.0 1.1 1 0 0 1 1 1 1 Winged helix-turn-helix DUF2250 PF10007.4 gi|433590568|ref|YP_007280064.1| - 0.0063 16.3 0.0 0.012 15.4 0.0 1.4 2 0 0 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2250) MarR_2 PF12802.2 gi|433590568|ref|YP_007280064.1| - 0.016 14.8 0.0 0.025 14.2 0.0 1.3 1 0 0 1 1 1 0 MarR family HTH_AsnC-type PF13404.1 gi|433590568|ref|YP_007280064.1| - 0.042 13.4 0.0 0.064 12.8 0.0 1.3 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_20 PF12840.2 gi|433590568|ref|YP_007280064.1| - 0.067 13.0 0.0 0.094 12.5 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain TrmB PF01978.14 gi|433590568|ref|YP_007280064.1| - 0.077 12.7 0.0 0.11 12.2 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB z-alpha PF02295.12 gi|433590568|ref|YP_007280064.1| - 0.13 12.0 0.0 0.21 11.4 0.0 1.2 1 0 0 1 1 1 0 Adenosine deaminase z-alpha domain Trehalose_PPase PF02358.11 gi|433590569|ref|YP_007280065.1| - 1.1e-39 135.7 0.0 1.3e-39 135.5 0.0 1.1 1 0 0 1 1 1 1 Trehalose-phosphatase Hydrolase_3 PF08282.7 gi|433590569|ref|YP_007280065.1| - 0.14 11.6 0.0 0.25 10.9 0.0 1.3 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase Glyco_transf_20 PF00982.16 gi|433590570|ref|YP_007280066.1| - 1.2e-113 380.1 0.0 1.5e-113 379.8 0.0 1.0 1 0 0 1 1 1 1 Glycosyltransferase family 20 COQ9 PF08511.6 gi|433590570|ref|YP_007280066.1| - 0.028 13.9 0.2 0.17 11.4 0.0 2.1 2 0 0 2 2 2 0 COQ9 Glycos_transf_1 PF00534.15 gi|433590570|ref|YP_007280066.1| - 0.22 10.9 0.0 0.9 8.9 0.0 1.8 2 0 0 2 2 2 0 Glycosyl transferases group 1 Peptidase_M24 PF00557.19 gi|433590571|ref|YP_007280067.1| - 8.8e-54 182.2 3.3 3.3e-53 180.3 2.3 1.8 1 1 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.13 gi|433590571|ref|YP_007280067.1| - 6.5e-21 75.2 0.0 1.3e-20 74.2 0.0 1.5 2 0 0 2 2 2 1 Creatinase/Prolidase N-terminal domain Cdc6_C PF09079.6 gi|433590572|ref|YP_007280068.1| - 2.3e-19 68.8 0.0 5.1e-19 67.7 0.0 1.6 1 0 0 1 1 1 1 CDC6, C terminal AAA_22 PF13401.1 gi|433590572|ref|YP_007280068.1| - 3.5e-14 53.0 0.1 8.7e-14 51.7 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|433590572|ref|YP_007280068.1| - 2.8e-13 50.2 3.6 1.3e-11 44.8 0.0 3.3 3 1 0 3 3 3 1 AAA ATPase domain AAA_5 PF07728.9 gi|433590572|ref|YP_007280068.1| - 2.8e-05 23.8 0.0 7e-05 22.5 0.0 1.7 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) Sigma54_activat PF00158.21 gi|433590572|ref|YP_007280068.1| - 3.8e-05 23.2 0.0 7.1e-05 22.3 0.0 1.4 1 0 0 1 1 1 1 Sigma-54 interaction domain AAA PF00004.24 gi|433590572|ref|YP_007280068.1| - 0.00012 22.2 0.2 0.00064 19.9 0.2 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) NACHT PF05729.7 gi|433590572|ref|YP_007280068.1| - 0.00023 20.8 0.0 0.0004 20.0 0.0 1.4 1 0 0 1 1 1 1 NACHT domain Sigma54_activ_2 PF14532.1 gi|433590572|ref|YP_007280068.1| - 0.0011 18.9 0.0 0.0028 17.7 0.0 1.7 1 1 0 1 1 1 1 Sigma-54 interaction domain DUF2075 PF09848.4 gi|433590572|ref|YP_007280068.1| - 0.0028 16.6 0.0 0.0037 16.2 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) AAA_2 PF07724.9 gi|433590572|ref|YP_007280068.1| - 0.0031 17.4 0.0 0.0052 16.7 0.0 1.3 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) DUF815 PF05673.8 gi|433590572|ref|YP_007280068.1| - 0.0033 16.3 0.0 0.0053 15.7 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF815) PhoH PF02562.11 gi|433590572|ref|YP_007280068.1| - 0.0041 16.3 0.1 0.97 8.6 0.0 2.4 2 0 0 2 2 2 1 PhoH-like protein DUF87 PF01935.12 gi|433590572|ref|YP_007280068.1| - 0.0049 16.7 0.0 0.011 15.6 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function DUF87 AAA_24 PF13479.1 gi|433590572|ref|YP_007280068.1| - 0.0054 16.3 0.0 0.0075 15.8 0.0 1.2 1 0 0 1 1 1 1 AAA domain DEAD PF00270.24 gi|433590572|ref|YP_007280068.1| - 0.0085 15.5 0.0 3.7 7.0 0.0 2.3 2 0 0 2 2 2 2 DEAD/DEAH box helicase Mg_chelatase PF01078.16 gi|433590572|ref|YP_007280068.1| - 0.011 14.8 0.0 0.021 13.9 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI NB-ARC PF00931.17 gi|433590572|ref|YP_007280068.1| - 0.017 14.0 0.0 0.029 13.2 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain RNA_helicase PF00910.17 gi|433590572|ref|YP_007280068.1| - 0.017 15.2 0.0 0.036 14.2 0.0 1.6 1 0 0 1 1 1 0 RNA helicase Arch_ATPase PF01637.13 gi|433590572|ref|YP_007280068.1| - 0.041 13.5 0.0 0.07 12.8 0.0 1.4 1 0 0 1 1 1 0 Archaeal ATPase AAA_18 PF13238.1 gi|433590572|ref|YP_007280068.1| - 0.059 13.6 0.0 0.13 12.6 0.0 1.7 1 0 0 1 1 1 0 AAA domain FtsK_SpoIIIE PF01580.13 gi|433590572|ref|YP_007280068.1| - 0.065 12.7 0.0 0.15 11.4 0.0 1.7 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_17 PF13207.1 gi|433590572|ref|YP_007280068.1| - 0.067 14.0 1.2 0.24 12.2 0.9 2.4 1 1 0 1 1 1 0 AAA domain IstB_IS21 PF01695.12 gi|433590572|ref|YP_007280068.1| - 0.079 12.3 0.2 0.25 10.7 0.1 1.8 1 1 1 2 2 2 0 IstB-like ATP binding protein AAA_25 PF13481.1 gi|433590572|ref|YP_007280068.1| - 0.09 12.1 1.4 0.53 9.6 1.0 2.1 1 1 0 1 1 1 0 AAA domain UPF0547 PF10571.4 gi|433590573|ref|YP_007280069.1| - 0.00029 20.4 2.0 0.38 10.4 0.1 2.0 2 0 0 2 2 2 2 Uncharacterised protein family UPF0547 zinc_ribbon_5 PF13719.1 gi|433590573|ref|YP_007280069.1| - 0.00031 20.2 1.1 0.52 9.9 0.0 2.1 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|433590573|ref|YP_007280069.1| - 0.00046 19.8 1.3 0.62 9.8 0.0 2.1 2 0 0 2 2 2 2 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|433590573|ref|YP_007280069.1| - 0.0031 16.6 3.1 0.022 13.9 2.2 2.0 1 1 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|433590573|ref|YP_007280069.1| - 0.0091 15.7 0.7 0.019 14.7 0.5 1.5 1 1 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|433590573|ref|YP_007280069.1| - 0.016 14.7 0.4 0.14 11.7 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain zf-LITAF-like PF10601.4 gi|433590573|ref|YP_007280069.1| - 0.017 15.0 0.3 2.5 8.0 0.0 2.1 2 0 0 2 2 2 0 LITAF-like zinc ribbon domain Zn-ribbon_8 PF09723.5 gi|433590573|ref|YP_007280069.1| - 0.021 14.7 1.4 2.5 8.1 0.2 2.2 2 0 0 2 2 2 0 Zinc ribbon domain Nudix_N_2 PF14803.1 gi|433590573|ref|YP_007280069.1| - 0.022 14.4 2.9 1.3 8.7 0.0 2.2 2 0 0 2 2 2 0 Nudix N-terminal Zn_Tnp_IS1595 PF12760.2 gi|433590573|ref|YP_007280069.1| - 0.064 13.0 0.4 1.5 8.6 0.0 2.0 2 0 0 2 2 2 0 Transposase zinc-ribbon domain DNA_RNApol_7kD PF03604.8 gi|433590573|ref|YP_007280069.1| - 0.068 12.6 1.1 0.27 10.7 0.1 2.0 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zinc-ribbons_6 PF07191.7 gi|433590573|ref|YP_007280069.1| - 0.07 12.9 0.4 0.15 11.8 0.3 1.5 1 1 0 1 1 1 0 zinc-ribbons TF_Zn_Ribbon PF08271.7 gi|433590573|ref|YP_007280069.1| - 0.1 11.9 0.8 1.7 8.0 0.1 2.1 2 0 0 2 2 2 0 TFIIB zinc-binding CpXC PF14353.1 gi|433590573|ref|YP_007280069.1| - 0.28 11.1 1.0 2.4 8.1 0.8 1.9 1 1 1 2 2 2 0 CpXC protein DNA_ligase_ZBD PF03119.11 gi|433590573|ref|YP_007280069.1| - 1 9.1 4.1 3.7 7.3 1.3 2.5 1 1 1 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Zn_Tnp_IS1 PF03811.8 gi|433590573|ref|YP_007280069.1| - 1.3 8.6 4.6 0.85 9.1 0.1 2.1 2 0 0 2 2 2 0 InsA N-terminal domain Iron_transport PF10634.4 gi|433590574|ref|YP_007280070.1| - 0.0038 17.1 0.0 0.032 14.1 0.0 2.3 2 1 0 2 2 2 1 Fe2+ transport protein SCO1-SenC PF02630.9 gi|433590575|ref|YP_007280071.1| - 5.4e-09 35.8 0.0 9.6e-09 35.0 0.0 1.4 1 1 0 1 1 1 1 SCO1/SenC AhpC-TSA PF00578.16 gi|433590575|ref|YP_007280071.1| - 0.00044 19.9 0.0 0.0016 18.1 0.0 1.9 1 1 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|433590575|ref|YP_007280071.1| - 0.017 14.6 0.0 0.076 12.5 0.0 1.9 2 0 0 2 2 2 0 Redoxin Redoxin PF08534.5 gi|433590576|ref|YP_007280072.1| - 8.7e-14 51.2 0.0 1e-13 51.0 0.0 1.1 1 0 0 1 1 1 1 Redoxin Thioredoxin_8 PF13905.1 gi|433590576|ref|YP_007280072.1| - 1.2e-10 41.4 0.0 1.7e-10 40.8 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin-like AhpC-TSA PF00578.16 gi|433590576|ref|YP_007280072.1| - 2.5e-10 40.0 0.0 3.1e-10 39.7 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Thioredoxin PF00085.15 gi|433590576|ref|YP_007280072.1| - 6.6e-10 38.5 0.0 3.3e-07 29.9 0.0 2.2 2 0 0 2 2 2 2 Thioredoxin Thioredoxin_2 PF13098.1 gi|433590576|ref|YP_007280072.1| - 5.4e-06 26.5 0.0 7.3e-06 26.1 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_7 PF13899.1 gi|433590576|ref|YP_007280072.1| - 0.028 14.4 0.0 0.046 13.7 0.0 1.3 1 0 0 1 1 1 0 Thioredoxin-like DsbD PF02683.10 gi|433590577|ref|YP_007280073.1| - 1.2e-12 47.9 18.3 1.6e-12 47.5 12.7 1.1 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region Cad PF03596.8 gi|433590577|ref|YP_007280073.1| - 4.7 6.8 9.5 0.14 11.7 1.7 2.0 2 1 0 2 2 2 0 Cadmium resistance transporter Usp PF00582.21 gi|433590578|ref|YP_007280074.1| - 2.7e-33 115.1 3.5 3e-33 114.9 2.4 1.0 1 0 0 1 1 1 1 Universal stress protein family DXP_reductoisom PF02670.11 gi|433590578|ref|YP_007280074.1| - 0.021 15.3 0.1 0.026 15.0 0.1 1.3 1 1 0 1 1 1 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase HTH_10 PF04967.7 gi|433590579|ref|YP_007280075.1| - 1.1e-18 66.5 0.0 2.7e-18 65.2 0.0 1.7 1 0 0 1 1 1 1 HTH DNA binding domain GAF_2 PF13185.1 gi|433590579|ref|YP_007280075.1| - 9.1e-17 61.9 12.4 3.6e-12 46.9 0.5 3.9 4 1 0 4 4 4 2 GAF domain PAS PF00989.19 gi|433590579|ref|YP_007280075.1| - 3.3e-14 52.6 0.0 3.4e-08 33.2 0.0 4.4 3 1 1 4 4 4 2 PAS fold PAS_8 PF13188.1 gi|433590579|ref|YP_007280075.1| - 3.3e-13 48.9 0.2 0.0016 18.2 0.0 4.0 3 0 0 3 3 3 3 PAS domain PAS_4 PF08448.5 gi|433590579|ref|YP_007280075.1| - 4.6e-13 49.1 14.5 8.1e-06 25.8 0.5 5.4 5 0 0 5 5 5 3 PAS fold PAS_3 PF08447.6 gi|433590579|ref|YP_007280075.1| - 1.9e-10 40.7 0.0 4.8e-10 39.4 0.0 1.7 1 0 0 1 1 1 1 PAS fold GAF_3 PF13492.1 gi|433590579|ref|YP_007280075.1| - 6.2e-09 36.0 0.3 0.0049 16.9 0.0 3.6 3 0 0 3 3 3 2 GAF domain PAS_9 PF13426.1 gi|433590579|ref|YP_007280075.1| - 1.9e-08 34.6 0.0 0.00018 21.8 0.0 3.7 3 0 0 3 3 3 1 PAS domain Sigma70_r4 PF04545.11 gi|433590579|ref|YP_007280075.1| - 6.6e-05 22.1 0.1 0.00025 20.2 0.0 2.1 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4_2 PF08281.7 gi|433590579|ref|YP_007280075.1| - 0.0024 17.3 0.1 0.036 13.5 0.1 2.6 1 1 0 1 1 1 1 Sigma-70, region 4 GerE PF00196.14 gi|433590579|ref|YP_007280075.1| - 0.0086 15.3 0.0 0.026 13.8 0.0 1.9 1 1 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_5 PF01022.15 gi|433590579|ref|YP_007280075.1| - 0.011 15.4 0.0 0.022 14.4 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|433590579|ref|YP_007280075.1| - 0.13 11.6 0.0 0.26 10.6 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding PAS_10 PF13596.1 gi|433590579|ref|YP_007280075.1| - 0.3 11.3 0.0 1.5 9.1 0.0 2.2 2 0 0 2 2 2 0 PAS domain HTH_10 PF04967.7 gi|433590580|ref|YP_007280076.1| - 3.7e-18 64.8 0.0 6.3e-18 64.1 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4 PF04545.11 gi|433590580|ref|YP_007280076.1| - 1.2e-07 30.8 0.2 3.3e-07 29.5 0.2 1.7 1 0 0 1 1 1 1 Sigma-70, region 4 MarR_2 PF12802.2 gi|433590580|ref|YP_007280076.1| - 8.7e-06 25.3 0.0 2.2e-05 24.0 0.0 1.7 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|433590580|ref|YP_007280076.1| - 2e-05 23.8 0.0 3.4e-05 23.1 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_3 PF01381.17 gi|433590580|ref|YP_007280076.1| - 0.00015 21.4 0.0 0.00037 20.2 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix Sigma70_r4_2 PF08281.7 gi|433590580|ref|YP_007280076.1| - 0.00062 19.1 0.3 0.0024 17.3 0.2 1.9 1 1 0 1 1 1 1 Sigma-70, region 4 HTH_11 PF08279.7 gi|433590580|ref|YP_007280076.1| - 0.0029 17.2 0.1 0.0056 16.3 0.0 1.4 1 0 0 1 1 1 1 HTH domain HTH_AsnC-type PF13404.1 gi|433590580|ref|YP_007280076.1| - 0.0036 16.8 0.3 0.0075 15.7 0.2 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_31 PF13560.1 gi|433590580|ref|YP_007280076.1| - 0.0082 16.3 0.6 0.038 14.1 0.1 2.2 2 1 0 2 2 2 1 Helix-turn-helix domain Fe_dep_repress PF01325.14 gi|433590580|ref|YP_007280076.1| - 0.009 15.9 0.0 0.015 15.1 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_38 PF13936.1 gi|433590580|ref|YP_007280076.1| - 0.012 15.1 0.0 0.024 14.1 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_23 PF13384.1 gi|433590580|ref|YP_007280076.1| - 0.025 14.2 0.0 0.053 13.1 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain HTH_37 PF13744.1 gi|433590580|ref|YP_007280076.1| - 0.029 14.1 0.1 0.05 13.4 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain UPF0122 PF04297.9 gi|433590580|ref|YP_007280076.1| - 0.03 14.3 0.0 0.054 13.5 0.0 1.4 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like MarR PF01047.17 gi|433590580|ref|YP_007280076.1| - 0.038 13.7 0.0 0.07 12.8 0.0 1.4 1 0 0 1 1 1 0 MarR family Phage_CI_repr PF07022.8 gi|433590580|ref|YP_007280076.1| - 0.038 14.0 0.0 0.074 13.1 0.0 1.4 1 0 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain Sigma70_ECF PF07638.6 gi|433590580|ref|YP_007280076.1| - 0.043 13.4 0.1 0.091 12.4 0.1 1.5 1 1 0 1 1 1 0 ECF sigma factor HTH_1 PF00126.22 gi|433590580|ref|YP_007280076.1| - 0.046 13.4 0.4 0.23 11.1 0.1 2.3 3 0 0 3 3 2 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_27 PF13463.1 gi|433590580|ref|YP_007280076.1| - 0.058 13.7 1.6 1.2 9.5 0.1 3.0 2 1 1 3 3 3 0 Winged helix DNA-binding domain HTH_19 PF12844.2 gi|433590580|ref|YP_007280076.1| - 0.06 13.4 0.1 0.25 11.4 0.0 2.0 3 0 0 3 3 2 0 Helix-turn-helix domain RPA_C PF08784.6 gi|433590580|ref|YP_007280076.1| - 0.077 13.4 0.0 0.14 12.6 0.0 1.4 1 0 0 1 1 1 0 Replication protein A C terminal HTH_20 PF12840.2 gi|433590580|ref|YP_007280076.1| - 0.094 12.5 0.0 0.28 11.0 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain SIS PF01380.17 gi|433590582|ref|YP_007280078.1| - 4.2e-49 165.4 0.1 1.6e-23 82.7 0.7 2.3 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.1 gi|433590582|ref|YP_007280078.1| - 2.4e-25 89.0 0.1 1.1e-24 86.9 0.0 2.0 2 0 0 2 2 2 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|433590582|ref|YP_007280078.1| - 2.4e-22 79.1 0.0 2.6e-16 59.2 0.0 2.7 1 1 1 2 2 2 2 Glutamine amidotransferases class-II GATase_7 PF13537.1 gi|433590582|ref|YP_007280078.1| - 3.1e-20 72.1 0.0 6e-20 71.2 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_4 PF13230.1 gi|433590582|ref|YP_007280078.1| - 5.4e-05 21.9 0.0 8.7e-05 21.3 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferases class-II Zn-ribbon_8 PF09723.5 gi|433590584|ref|YP_007280080.1| - 0.037 13.9 2.9 1.4 8.9 0.1 2.2 1 1 1 2 2 2 0 Zinc ribbon domain Nudix_N_2 PF14803.1 gi|433590584|ref|YP_007280080.1| - 0.043 13.5 1.1 0.16 11.6 0.8 1.8 1 1 0 1 1 1 0 Nudix N-terminal Arv1 PF04161.8 gi|433590584|ref|YP_007280080.1| - 0.05 13.5 0.2 0.058 13.3 0.2 1.1 1 0 0 1 1 1 0 Arv1-like family zf-LITAF-like PF10601.4 gi|433590584|ref|YP_007280080.1| - 0.07 12.9 4.2 0.3 10.9 0.2 2.1 1 1 1 2 2 2 0 LITAF-like zinc ribbon domain DZR PF12773.2 gi|433590584|ref|YP_007280080.1| - 0.074 12.8 2.2 0.16 11.7 1.6 1.6 1 1 0 1 1 1 0 Double zinc ribbon RecR PF02132.10 gi|433590584|ref|YP_007280080.1| - 0.098 12.1 1.9 0.51 9.8 0.0 2.1 1 1 1 2 2 2 0 RecR protein RNHCP PF12647.2 gi|433590584|ref|YP_007280080.1| - 0.14 11.9 1.5 0.3 10.9 1.0 1.5 1 1 0 1 1 1 0 RNHCP domain PolC_DP2 PF03833.8 gi|433590584|ref|YP_007280080.1| - 0.15 9.6 0.3 0.15 9.6 0.2 1.0 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 zf-RING_3 PF14369.1 gi|433590584|ref|YP_007280080.1| - 0.16 12.0 1.0 4 7.5 0.1 2.2 2 0 0 2 2 2 0 zinc-finger TFIIS_C PF01096.13 gi|433590584|ref|YP_007280080.1| - 0.24 11.0 1.5 1.5 8.5 0.1 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Prok-RING_1 PF14446.1 gi|433590584|ref|YP_007280080.1| - 0.5 10.1 3.9 5.2 6.8 2.7 2.0 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 Zn_Tnp_IS1595 PF12760.2 gi|433590584|ref|YP_007280080.1| - 0.71 9.7 3.5 7.9 6.3 2.5 2.0 1 1 1 2 2 2 0 Transposase zinc-ribbon domain PGM_PMM_I PF02878.11 gi|433590585|ref|YP_007280081.1| - 6.4e-37 126.1 0.0 1.1e-36 125.3 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_III PF02880.11 gi|433590585|ref|YP_007280081.1| - 3.6e-20 72.0 0.0 1.1e-19 70.5 0.0 1.9 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_II PF02879.11 gi|433590585|ref|YP_007280081.1| - 1.5e-19 70.2 0.0 4.4e-19 68.7 0.0 1.8 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.15 gi|433590585|ref|YP_007280081.1| - 2.4e-11 43.4 0.2 6.3e-11 42.1 0.2 1.7 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain MarR_2 PF12802.2 gi|433590586|ref|YP_007280082.1| - 0.00069 19.2 0.1 0.00094 18.7 0.0 1.2 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|433590586|ref|YP_007280082.1| - 0.00083 19.0 0.0 0.0012 18.4 0.0 1.2 1 0 0 1 1 1 1 MarR family GntR PF00392.16 gi|433590586|ref|YP_007280082.1| - 0.022 14.1 0.1 0.034 13.5 0.1 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family TFIIE_alpha PF02002.12 gi|433590586|ref|YP_007280082.1| - 0.024 14.1 0.0 0.031 13.7 0.0 1.1 1 0 0 1 1 1 0 TFIIE alpha subunit HTH_Crp_2 PF13545.1 gi|433590586|ref|YP_007280082.1| - 0.026 14.3 0.0 0.04 13.7 0.0 1.3 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain TrmB PF01978.14 gi|433590586|ref|YP_007280082.1| - 0.051 13.2 0.1 0.071 12.8 0.1 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_12 PF08461.5 gi|433590586|ref|YP_007280082.1| - 0.063 13.0 0.0 0.14 11.9 0.0 1.6 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain Rrf2 PF02082.15 gi|433590586|ref|YP_007280082.1| - 0.11 12.6 0.0 0.16 12.1 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator HTH_20 PF12840.2 gi|433590586|ref|YP_007280082.1| - 0.11 12.2 0.0 0.17 11.7 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain SNF PF00209.13 gi|433590587|ref|YP_007280083.1| - 3.4e-50 171.0 26.2 3.7e-26 91.6 4.9 2.1 1 1 0 2 2 2 2 Sodium:neurotransmitter symporter family Acetyltransf_6 PF13480.1 gi|433590588|ref|YP_007280084.1| - 2.1e-17 63.4 0.1 4.7e-17 62.2 0.1 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FemAB PF02388.11 gi|433590588|ref|YP_007280084.1| - 3.5e-08 32.5 0.0 7.9e-05 21.5 0.0 2.1 2 0 0 2 2 2 2 FemAB family Phosphodiest PF01663.17 gi|433590589|ref|YP_007280085.1| - 7.5e-38 130.7 0.0 8.5e-37 127.3 0.0 2.0 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Metalloenzyme PF01676.13 gi|433590589|ref|YP_007280085.1| - 0.012 15.0 0.0 0.19 11.0 0.0 2.1 2 0 0 2 2 2 0 Metalloenzyme superfamily DegT_DnrJ_EryC1 PF01041.12 gi|433590590|ref|YP_007280086.1| - 6.3e-18 64.9 0.0 2.7e-17 62.8 0.0 1.8 1 1 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_1_2 PF00155.16 gi|433590590|ref|YP_007280086.1| - 0.0014 17.6 0.0 0.0024 16.8 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class I and II AAA_10 PF12846.2 gi|433590591|ref|YP_007280087.1| - 8.2e-18 64.8 5.0 3.3e-09 36.6 0.0 3.0 1 1 1 3 3 2 2 AAA-like domain DUF87 PF01935.12 gi|433590591|ref|YP_007280087.1| - 9.8e-11 41.9 3.0 1.5e-10 41.2 0.0 2.3 2 1 0 2 2 2 1 Domain of unknown function DUF87 DUF853 PF05872.7 gi|433590591|ref|YP_007280087.1| - 0.0001 20.8 2.1 0.0022 16.3 0.0 2.6 3 0 0 3 3 3 1 Bacterial protein of unknown function (DUF853) CENP-F_leu_zip PF10473.4 gi|433590591|ref|YP_007280087.1| - 0.00013 21.7 22.3 0.0055 16.5 15.4 2.5 1 1 0 1 1 1 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 CASP_C PF08172.7 gi|433590591|ref|YP_007280087.1| - 0.00014 20.9 9.0 0.039 12.9 1.7 2.4 2 0 0 2 2 2 2 CASP C terminal CbiA PF01656.18 gi|433590591|ref|YP_007280087.1| - 0.00057 19.3 0.0 0.0029 17.0 0.0 2.2 2 0 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain ATG16 PF08614.6 gi|433590591|ref|YP_007280087.1| - 0.00078 19.3 21.4 0.061 13.1 4.6 2.4 1 1 1 2 2 2 2 Autophagy protein 16 (ATG16) Phage_GP20 PF06810.6 gi|433590591|ref|YP_007280087.1| - 0.00094 18.6 1.8 0.00094 18.6 1.2 2.6 1 1 1 2 2 2 1 Phage minor structural protein GP20 HlyD PF00529.15 gi|433590591|ref|YP_007280087.1| - 0.0017 17.7 13.8 0.0036 16.6 9.6 1.4 1 0 0 1 1 1 1 HlyD family secretion protein IncA PF04156.9 gi|433590591|ref|YP_007280087.1| - 0.002 17.7 26.0 0.015 14.9 17.5 2.3 1 1 0 1 1 1 1 IncA protein APS_kinase PF01583.15 gi|433590591|ref|YP_007280087.1| - 0.0053 16.4 0.3 0.027 14.1 0.0 2.4 3 0 0 3 3 1 1 Adenylylsulphate kinase AAA_17 PF13207.1 gi|433590591|ref|YP_007280087.1| - 0.012 16.4 0.0 0.012 16.4 0.0 2.9 2 1 0 2 2 1 0 AAA domain TPR_MLP1_2 PF07926.7 gi|433590591|ref|YP_007280087.1| - 0.012 15.3 12.9 0.025 14.3 8.9 1.5 1 0 0 1 1 1 0 TPR/MLP1/MLP2-like protein MobB PF03205.9 gi|433590591|ref|YP_007280087.1| - 0.013 15.2 0.0 0.033 13.8 0.0 1.7 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B Reo_sigmaC PF04582.7 gi|433590591|ref|YP_007280087.1| - 0.014 14.5 5.3 0.33 10.0 0.1 2.4 1 1 1 2 2 2 0 Reovirus sigma C capsid protein TrmB PF01978.14 gi|433590591|ref|YP_007280087.1| - 0.017 14.8 1.3 0.052 13.2 0.1 2.2 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB FliJ PF02050.11 gi|433590591|ref|YP_007280087.1| - 0.017 15.1 11.8 0.061 13.3 2.6 2.1 1 1 1 2 2 2 0 Flagellar FliJ protein Med4 PF10018.4 gi|433590591|ref|YP_007280087.1| - 0.018 14.4 15.0 0.12 11.7 3.7 2.4 2 0 0 2 2 2 0 Vitamin-D-receptor interacting Mediator subunit 4 Striatin PF08232.7 gi|433590591|ref|YP_007280087.1| - 0.019 15.2 17.0 0.11 12.7 2.9 2.8 3 0 0 3 3 2 0 Striatin family ERM PF00769.14 gi|433590591|ref|YP_007280087.1| - 0.028 13.9 25.4 0.14 11.7 17.7 1.9 1 1 0 1 1 1 0 Ezrin/radixin/moesin family DUF3584 PF12128.3 gi|433590591|ref|YP_007280087.1| - 0.036 11.4 13.6 0.052 10.8 9.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) Rootletin PF15035.1 gi|433590591|ref|YP_007280087.1| - 0.043 13.7 18.3 0.081 12.8 12.7 1.4 1 0 0 1 1 1 0 Ciliary rootlet component, centrosome cohesion AAA PF00004.24 gi|433590591|ref|YP_007280087.1| - 0.056 13.6 0.0 0.74 10.0 0.0 2.5 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) TMF_TATA_bd PF12325.3 gi|433590591|ref|YP_007280087.1| - 0.085 12.5 19.3 0.046 13.4 5.5 2.7 1 1 0 2 2 2 0 TATA element modulatory factor 1 TATA binding Prefoldin_2 PF01920.15 gi|433590591|ref|YP_007280087.1| - 0.1 12.3 17.6 0.23 11.2 3.7 3.1 2 1 1 3 3 3 0 Prefoldin subunit MAD PF05557.8 gi|433590591|ref|YP_007280087.1| - 0.12 10.4 17.4 0.4 8.7 12.1 1.7 1 1 0 1 1 1 0 Mitotic checkpoint protein AAA_22 PF13401.1 gi|433590591|ref|YP_007280087.1| - 0.14 12.3 0.8 1 9.5 0.0 2.6 2 2 0 2 2 2 0 AAA domain GAS PF13851.1 gi|433590591|ref|YP_007280087.1| - 0.14 11.2 16.9 0.41 9.8 3.2 2.3 1 1 1 2 2 2 0 Growth-arrest specific micro-tubule binding Spectrin PF00435.16 gi|433590591|ref|YP_007280087.1| - 0.15 12.3 13.0 0.15 12.4 7.7 2.0 1 1 0 1 1 1 0 Spectrin repeat DUF342 PF03961.8 gi|433590591|ref|YP_007280087.1| - 0.16 10.3 6.9 0.24 9.7 4.8 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF342) XhlA PF10779.4 gi|433590591|ref|YP_007280087.1| - 0.16 11.8 16.6 0.11 12.3 3.0 2.5 2 0 0 2 2 2 0 Haemolysin XhlA DUF241 PF03087.9 gi|433590591|ref|YP_007280087.1| - 0.18 11.2 6.0 0.09 12.2 0.2 2.3 2 0 0 2 2 2 0 Arabidopsis protein of unknown function FlaC_arch PF05377.6 gi|433590591|ref|YP_007280087.1| - 0.2 11.5 8.8 0.56 10.1 0.7 3.3 2 1 1 3 3 3 0 Flagella accessory protein C (FlaC) ADIP PF11559.3 gi|433590591|ref|YP_007280087.1| - 0.26 11.1 17.5 0.4 10.5 3.7 2.5 1 1 1 2 2 2 0 Afadin- and alpha -actinin-Binding HR1 PF02185.11 gi|433590591|ref|YP_007280087.1| - 0.36 10.5 9.9 1.6 8.5 2.6 3.2 2 1 1 3 3 2 0 Hr1 repeat CDC37_N PF03234.9 gi|433590591|ref|YP_007280087.1| - 0.42 10.9 12.0 0.79 10.0 8.3 1.4 1 0 0 1 1 1 0 Cdc37 N terminal kinase binding HAUS-augmin3 PF14932.1 gi|433590591|ref|YP_007280087.1| - 0.46 9.6 11.8 1.2 8.2 8.2 1.6 1 1 0 1 1 1 0 HAUS augmin-like complex subunit 3 AAA_13 PF13166.1 gi|433590591|ref|YP_007280087.1| - 0.47 8.8 11.6 6.1 5.1 7.6 1.8 1 1 0 1 1 1 0 AAA domain DUF4201 PF13870.1 gi|433590591|ref|YP_007280087.1| - 0.59 9.5 15.4 1.7 8.0 2.7 2.6 1 1 1 2 2 2 0 Domain of unknown function (DUF4201) APG6 PF04111.7 gi|433590591|ref|YP_007280087.1| - 0.63 9.0 17.7 1.1 8.2 11.9 1.6 1 1 0 1 1 1 0 Autophagy protein Apg6 Spc7 PF08317.6 gi|433590591|ref|YP_007280087.1| - 0.88 8.1 15.5 3.3 6.2 10.8 1.8 1 1 0 1 1 1 0 Spc7 kinetochore protein DivIVA PF05103.8 gi|433590591|ref|YP_007280087.1| - 0.91 9.5 17.8 2.2 8.3 8.7 2.9 1 1 1 2 2 2 0 DivIVA protein Baculo_PEP_C PF04513.7 gi|433590591|ref|YP_007280087.1| - 1 9.1 6.6 5.4 6.8 0.1 2.6 1 1 0 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF2730 PF10805.3 gi|433590591|ref|YP_007280087.1| - 1.1 9.0 10.2 0.68 9.6 0.2 3.1 1 1 2 3 3 3 0 Protein of unknown function (DUF2730) Fib_alpha PF08702.5 gi|433590591|ref|YP_007280087.1| - 1.1 9.3 4.6 4.1 7.5 3.2 1.9 1 1 0 1 1 1 0 Fibrinogen alpha/beta chain family V_ATPase_I PF01496.14 gi|433590591|ref|YP_007280087.1| - 1.2 6.8 10.9 2.4 5.9 7.6 1.4 1 1 0 1 1 1 0 V-type ATPase 116kDa subunit family SlyX PF04102.7 gi|433590591|ref|YP_007280087.1| - 1.3 9.4 18.4 0.49 10.8 3.5 2.8 1 1 0 2 2 2 0 SlyX DUF4407 PF14362.1 gi|433590591|ref|YP_007280087.1| - 1.3 7.9 15.2 2.4 7.0 10.5 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) Bacillus_HBL PF05791.6 gi|433590591|ref|YP_007280087.1| - 1.3 8.3 5.3 7.4 5.9 2.1 2.3 1 1 1 2 2 2 0 Bacillus haemolytic enterotoxin (HBL) Laminin_II PF06009.7 gi|433590591|ref|YP_007280087.1| - 1.8 8.3 7.5 2.1 8.1 0.9 2.6 1 1 1 2 2 2 0 Laminin Domain II DUF972 PF06156.8 gi|433590591|ref|YP_007280087.1| - 1.9 8.8 12.0 0.87 9.9 1.4 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF972) TMF_DNA_bd PF12329.3 gi|433590591|ref|YP_007280087.1| - 2 8.2 17.8 3 7.7 3.5 2.8 1 1 0 2 2 2 0 TATA element modulatory factor 1 DNA binding DUF641 PF04859.7 gi|433590591|ref|YP_007280087.1| - 2.2 8.0 11.9 4.7 6.9 1.6 2.7 1 1 1 2 2 2 0 Plant protein of unknown function (DUF641) IFT57 PF10498.4 gi|433590591|ref|YP_007280087.1| - 3.2 6.4 11.9 4 6.0 7.0 2.0 1 1 0 1 1 1 0 Intra-flagellar transport protein 57 Atg14 PF10186.4 gi|433590591|ref|YP_007280087.1| - 3.3 6.5 18.5 1.9 7.3 2.5 2.2 1 1 0 2 2 2 0 UV radiation resistance protein and autophagy-related subunit 14 DUF607 PF04678.8 gi|433590591|ref|YP_007280087.1| - 3.9 7.3 8.9 7.6 6.4 3.8 2.8 1 1 2 3 3 3 0 Protein of unknown function, DUF607 PilO PF04350.8 gi|433590591|ref|YP_007280087.1| - 4.4 7.1 6.5 63 3.4 1.1 3.2 2 1 1 3 3 3 0 Pilus assembly protein, PilO Mod_r PF07200.8 gi|433590591|ref|YP_007280087.1| - 4.7 7.1 14.5 2.6 7.9 7.4 2.2 1 1 1 2 2 2 0 Modifier of rudimentary (Mod(r)) protein Prefoldin PF02996.12 gi|433590591|ref|YP_007280087.1| - 4.7 6.8 9.5 5.5 6.6 1.2 2.8 2 1 0 2 2 2 0 Prefoldin subunit DUF2968 PF11180.3 gi|433590591|ref|YP_007280087.1| - 5.8 6.2 13.0 12 5.2 8.1 2.2 1 1 0 1 1 1 0 Protein of unknown function (DUF2968) TBPIP PF07106.8 gi|433590591|ref|YP_007280087.1| - 6.3 6.3 13.1 3.9 6.9 2.0 2.4 1 1 1 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) COG2 PF06148.6 gi|433590591|ref|YP_007280087.1| - 6.3 6.6 14.8 3.1 7.6 0.6 2.9 3 0 0 3 3 2 0 COG (conserved oligomeric Golgi) complex component, COG2 DivIC PF04977.10 gi|433590591|ref|YP_007280087.1| - 9.5 5.7 21.4 2.3 7.7 1.6 3.8 3 1 1 4 4 3 0 Septum formation initiator TMCO5 PF14992.1 gi|433590591|ref|YP_007280087.1| - 9.8 5.2 17.7 15 4.6 11.3 1.8 1 1 1 2 2 2 0 TMCO5 family ResIII PF04851.10 gi|433590592|ref|YP_007280088.1| - 3.6e-13 49.7 0.0 7.8e-13 48.6 0.0 1.6 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit SNF2_N PF00176.18 gi|433590592|ref|YP_007280088.1| - 1.4e-12 47.0 0.0 2.2e-12 46.4 0.0 1.2 1 0 0 1 1 1 1 SNF2 family N-terminal domain Helicase_C PF00271.26 gi|433590592|ref|YP_007280088.1| - 3e-12 46.2 0.0 5.9e-12 45.2 0.0 1.5 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DEAD PF00270.24 gi|433590592|ref|YP_007280088.1| - 2e-08 33.9 0.0 5.7e-08 32.4 0.0 1.7 2 0 0 2 2 2 1 DEAD/DEAH box helicase AAA_19 PF13245.1 gi|433590592|ref|YP_007280088.1| - 9.7e-05 22.0 0.2 0.00074 19.2 0.0 2.6 3 0 0 3 3 3 1 Part of AAA domain AAA_25 PF13481.1 gi|433590592|ref|YP_007280088.1| - 0.0034 16.8 5.4 0.0045 16.4 0.1 3.4 3 2 1 4 4 4 1 AAA domain AAA_22 PF13401.1 gi|433590592|ref|YP_007280088.1| - 0.0046 17.1 0.2 0.087 12.9 0.0 3.1 2 2 1 3 3 3 1 AAA domain AAA_33 PF13671.1 gi|433590592|ref|YP_007280088.1| - 0.0067 16.3 0.1 0.046 13.5 0.0 2.5 2 0 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|433590592|ref|YP_007280088.1| - 0.021 15.6 0.2 8.3 7.2 0.0 3.8 3 1 0 3 3 3 0 AAA domain DUF2075 PF09848.4 gi|433590592|ref|YP_007280088.1| - 0.024 13.5 0.1 5.4 5.8 0.0 2.3 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) AAA PF00004.24 gi|433590592|ref|YP_007280088.1| - 0.11 12.7 0.0 0.25 11.5 0.0 1.6 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) TFIIB PF00382.14 gi|433590594|ref|YP_007280090.1| - 2.7e-38 129.6 0.2 3.3e-20 71.6 0.1 2.2 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|433590594|ref|YP_007280090.1| - 2.9e-16 58.5 2.5 6.3e-16 57.4 1.7 1.6 1 0 0 1 1 1 1 TFIIB zinc-binding Cyclin_N PF00134.18 gi|433590594|ref|YP_007280090.1| - 0.0016 18.0 0.0 0.06 12.9 0.0 2.2 1 1 0 2 2 2 1 Cyclin, N-terminal domain Ribosomal_S27e PF01667.12 gi|433590594|ref|YP_007280090.1| - 0.027 14.0 0.1 0.07 12.6 0.1 1.6 1 0 0 1 1 1 0 Ribosomal protein S27 DZR PF12773.2 gi|433590594|ref|YP_007280090.1| - 0.042 13.6 0.3 0.11 12.3 0.2 1.7 1 0 0 1 1 1 0 Double zinc ribbon A2L_zn_ribbon PF08792.5 gi|433590594|ref|YP_007280090.1| - 0.068 12.6 0.3 0.15 11.5 0.2 1.6 1 0 0 1 1 1 0 A2L zinc ribbon domain zf-ribbon_3 PF13248.1 gi|433590594|ref|YP_007280090.1| - 0.075 12.2 0.3 0.17 11.1 0.2 1.6 1 0 0 1 1 1 0 zinc-ribbon domain GATA PF00320.22 gi|433590594|ref|YP_007280090.1| - 0.79 9.1 3.7 16 4.9 0.5 2.8 2 1 0 2 2 2 0 GATA zinc finger HTH_20 PF12840.2 gi|433590595|ref|YP_007280091.1| - 0.00045 19.9 0.1 0.0059 16.3 0.1 2.6 1 1 0 1 1 1 1 Helix-turn-helix domain 7TMR-DISM_7TM PF07695.6 gi|433590595|ref|YP_007280091.1| - 0.0027 17.4 0.0 0.0036 17.0 0.0 1.1 1 0 0 1 1 1 1 7TM diverse intracellular signalling HTH_11 PF08279.7 gi|433590595|ref|YP_007280091.1| - 0.031 13.9 0.1 0.06 13.0 0.1 1.5 1 0 0 1 1 1 0 HTH domain Sulfate_transp PF00916.15 gi|433590595|ref|YP_007280091.1| - 0.038 12.9 0.8 0.054 12.5 0.5 1.1 1 0 0 1 1 1 0 Sulfate transporter family DUF1495 PF07381.6 gi|433590595|ref|YP_007280091.1| - 0.049 13.2 0.1 0.88 9.2 0.0 2.5 2 1 1 3 3 3 0 Winged helix DNA-binding domain (DUF1495) Thymopoietin PF08198.6 gi|433590595|ref|YP_007280091.1| - 0.066 12.7 0.0 0.14 11.7 0.0 1.5 1 0 0 1 1 1 0 Thymopoietin protein DUF1480 PF07351.8 gi|433590595|ref|YP_007280091.1| - 0.11 12.4 0.2 0.3 11.0 0.1 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF1480) IncA PF04156.9 gi|433590595|ref|YP_007280091.1| - 0.37 10.3 2.2 0.66 9.5 1.5 1.3 1 0 0 1 1 1 0 IncA protein Beta_helix PF13229.1 gi|433590596|ref|YP_007280092.1| - 0.00029 20.6 4.2 0.0014 18.3 2.0 2.6 2 1 1 3 3 3 1 Right handed beta helix region TAT_signal PF10518.4 gi|433590596|ref|YP_007280092.1| - 0.027 14.4 5.2 0.078 13.0 3.6 1.9 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Phosphodiest PF01663.17 gi|433590600|ref|YP_007280096.1| - 2.4e-37 129.1 0.0 4.9e-35 121.5 0.0 2.0 2 0 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase Metalloenzyme PF01676.13 gi|433590600|ref|YP_007280096.1| - 0.0093 15.3 0.0 0.023 14.1 0.0 1.5 2 0 0 2 2 2 1 Metalloenzyme superfamily Acetyltransf_6 PF13480.1 gi|433590601|ref|YP_007280097.1| - 7.2e-19 68.1 0.1 1.9e-18 66.8 0.1 1.7 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FemAB PF02388.11 gi|433590601|ref|YP_007280097.1| - 1.8e-07 30.1 0.0 0.0001 21.1 0.0 2.1 2 0 0 2 2 2 2 FemAB family DUF1616 PF07760.6 gi|433590602|ref|YP_007280098.1| - 5.3e-59 199.7 0.2 6.1e-59 199.5 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) NADH-u_ox-rdase PF10785.4 gi|433590603|ref|YP_007280099.1| - 0.75 10.0 6.8 8.1 6.7 0.0 4.4 3 1 2 5 5 5 0 NADH-ubiquinone oxidoreductase complex I, 21 kDa subunit BNR_2 PF13088.1 gi|433590604|ref|YP_007280100.1| - 0.00033 20.0 0.2 0.00074 18.8 0.1 1.6 2 0 0 2 2 2 1 BNR repeat-like domain BNR PF02012.15 gi|433590604|ref|YP_007280100.1| - 0.45 10.5 8.6 4.3 7.5 0.9 3.9 3 0 0 3 3 3 0 BNR/Asp-box repeat Beta_helix PF13229.1 gi|433590605|ref|YP_007280101.1| - 1.4 8.6 33.6 0.041 13.6 10.3 3.7 3 1 1 4 4 4 0 Right handed beta helix region Polysacc_synt PF01943.12 gi|433590606|ref|YP_007280102.1| - 1.4e-22 80.2 10.7 1.4e-22 80.2 7.4 2.1 1 1 1 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_3 PF13440.1 gi|433590606|ref|YP_007280102.1| - 3.7e-16 59.3 21.8 3.7e-16 59.3 15.1 2.7 1 1 1 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.1 gi|433590606|ref|YP_007280102.1| - 3.7e-11 43.0 44.4 1.9e-10 40.7 11.7 3.9 3 1 0 3 3 3 2 Polysaccharide biosynthesis C-terminal domain Phosphodiest PF01663.17 gi|433590607|ref|YP_007280103.1| - 2.2e-43 148.9 0.0 3.2e-42 145.1 0.0 2.0 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Metalloenzyme PF01676.13 gi|433590607|ref|YP_007280103.1| - 5e-06 26.0 0.0 8e-06 25.4 0.0 1.2 1 0 0 1 1 1 1 Metalloenzyme superfamily PglZ PF08665.7 gi|433590607|ref|YP_007280103.1| - 0.083 12.5 0.0 0.19 11.3 0.0 1.5 2 0 0 2 2 2 0 PglZ domain Glycos_transf_1 PF00534.15 gi|433590608|ref|YP_007280104.1| - 6.7e-28 97.2 0.0 8.9e-28 96.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|433590608|ref|YP_007280104.1| - 1.4e-15 57.6 0.1 2.5e-15 56.7 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|433590608|ref|YP_007280104.1| - 1.2e-07 31.8 0.0 2.6e-07 30.8 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|433590608|ref|YP_007280104.1| - 5.5e-05 23.3 0.2 5.5e-05 23.3 0.1 2.1 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|433590608|ref|YP_007280104.1| - 0.0033 17.1 0.0 0.0074 16.0 0.0 1.6 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Sulfatase PF00884.18 gi|433590609|ref|YP_007280105.1| - 4e-42 144.4 0.0 5.4e-42 144.0 0.0 1.1 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.17 gi|433590609|ref|YP_007280105.1| - 1.1e-15 57.8 0.1 1.8e-09 37.4 0.0 2.3 2 0 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase DUF229 PF02995.12 gi|433590609|ref|YP_007280105.1| - 8.5e-06 24.4 0.0 1.5e-05 23.6 0.0 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF229) DUF1501 PF07394.7 gi|433590609|ref|YP_007280105.1| - 0.0052 15.6 0.0 0.009 14.8 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1501) Acetyltransf_6 PF13480.1 gi|433590610|ref|YP_007280106.1| - 2.8e-21 75.9 0.2 5.5e-21 75.0 0.1 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FemAB PF02388.11 gi|433590610|ref|YP_007280106.1| - 1.6e-06 27.0 0.0 1.3e-05 24.1 0.0 1.9 1 1 1 2 2 2 1 FemAB family Prenyltrans_1 PF13243.1 gi|433590611|ref|YP_007280107.1| - 5e-07 29.6 0.4 0.012 15.5 0.0 3.9 2 1 2 4 4 4 2 Prenyltransferase-like Prenyltrans_2 PF13249.1 gi|433590611|ref|YP_007280107.1| - 1.3e-06 28.8 0.0 0.00014 22.2 0.0 2.5 2 0 0 2 2 2 1 Prenyltransferase-like LANC_like PF05147.8 gi|433590611|ref|YP_007280107.1| - 0.00012 20.7 0.1 0.15 10.5 0.0 2.6 2 1 0 2 2 2 2 Lanthionine synthetase C-like protein Pec_lyase PF09492.5 gi|433590611|ref|YP_007280107.1| - 0.00069 18.8 0.0 0.0016 17.6 0.0 1.5 1 1 0 1 1 1 1 Pectic acid lyase Glyco_hydro_76 PF03663.9 gi|433590611|ref|YP_007280107.1| - 0.00098 18.5 0.1 0.089 12.1 0.0 2.5 2 1 1 3 3 3 1 Glycosyl hydrolase family 76 Glyco_hydro_88 PF07470.8 gi|433590611|ref|YP_007280107.1| - 0.001 18.1 1.4 0.0079 15.2 1.0 2.4 1 1 1 2 2 2 1 Glycosyl Hydrolase Family 88 DUF354 PF04007.7 gi|433590612|ref|YP_007280108.1| - 9.7e-12 44.3 0.0 2.6e-11 43.0 0.0 1.6 1 1 0 1 1 1 1 Protein of unknown function (DUF354) Glyco_trans_4_4 PF13579.1 gi|433590612|ref|YP_007280108.1| - 0.0024 18.0 2.7 0.0048 17.0 0.3 2.3 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_transf_28 PF03033.15 gi|433590612|ref|YP_007280108.1| - 0.033 13.9 0.0 0.089 12.5 0.0 1.7 1 0 0 1 1 1 0 Glycosyltransferase family 28 N-terminal domain DUF340 PF03956.8 gi|433590613|ref|YP_007280109.1| - 1.1e-58 197.6 29.0 1.9e-52 177.3 12.9 2.0 2 0 0 2 2 2 2 Membrane protein of unknown function (DUF340) FMN_dh PF01070.13 gi|433590614|ref|YP_007280110.1| - 6.4e-34 117.3 0.3 6.4e-23 81.1 0.1 2.1 1 1 1 2 2 2 2 FMN-dependent dehydrogenase IMPDH PF00478.20 gi|433590614|ref|YP_007280110.1| - 0.001 18.0 6.5 0.0012 17.8 1.5 2.7 2 1 0 2 2 2 1 IMP dehydrogenase / GMP reductase domain YuzL PF14115.1 gi|433590614|ref|YP_007280110.1| - 0.032 14.5 0.2 0.076 13.2 0.1 1.6 1 0 0 1 1 1 0 YuzL-like protein FhuF PF06276.7 gi|433590614|ref|YP_007280110.1| - 0.084 12.8 0.0 0.17 11.8 0.0 1.5 1 0 0 1 1 1 0 Ferric iron reductase FhuF-like transporter Glu_synthase PF01645.12 gi|433590614|ref|YP_007280110.1| - 0.1 11.4 6.7 0.085 11.7 3.2 1.9 2 1 0 2 2 2 0 Conserved region in glutamate synthase RS4NT PF08071.7 gi|433590616|ref|YP_007280112.1| - 0.069 13.0 0.0 0.21 11.4 0.0 1.9 1 0 0 1 1 1 0 RS4NT (NUC023) domain Epimerase_2 PF02350.14 gi|433590617|ref|YP_007280113.1| - 2e-100 335.9 0.0 2.4e-100 335.6 0.0 1.0 1 0 0 1 1 1 1 UDP-N-acetylglucosamine 2-epimerase MobB PF03205.9 gi|433590617|ref|YP_007280113.1| - 0.073 12.7 0.0 0.13 12.0 0.0 1.3 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B PAS_3 PF08447.6 gi|433590618|ref|YP_007280114.1| - 1.6e-15 56.9 0.1 2.1e-15 56.6 0.0 1.1 1 0 0 1 1 1 1 PAS fold PAS PF00989.19 gi|433590618|ref|YP_007280114.1| - 4.3e-12 45.8 0.0 5.1e-12 45.5 0.0 1.0 1 0 0 1 1 1 1 PAS fold PAS_4 PF08448.5 gi|433590618|ref|YP_007280114.1| - 1.5e-11 44.2 0.2 1.7e-11 44.0 0.2 1.0 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.1 gi|433590618|ref|YP_007280114.1| - 3.1e-07 30.7 0.0 3.6e-07 30.4 0.0 1.1 1 0 0 1 1 1 1 PAS domain PAS_8 PF13188.1 gi|433590618|ref|YP_007280114.1| - 0.00018 21.2 0.0 0.00029 20.5 0.0 1.4 1 1 0 1 1 1 1 PAS domain PAS_11 PF14598.1 gi|433590618|ref|YP_007280114.1| - 0.001 18.9 0.0 0.0013 18.6 0.0 1.1 1 0 0 1 1 1 1 PAS domain PAS_10 PF13596.1 gi|433590618|ref|YP_007280114.1| - 0.018 15.2 0.0 0.022 15.0 0.0 1.1 1 0 0 1 1 1 0 PAS domain SnoaL_2 PF12680.2 gi|433590618|ref|YP_007280114.1| - 0.02 15.2 0.8 0.029 14.7 0.4 1.4 1 1 0 1 1 1 0 SnoaL-like domain DapB_N PF01113.15 gi|433590618|ref|YP_007280114.1| - 0.11 12.4 0.0 0.14 12.0 0.0 1.2 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus PAS_7 PF12860.2 gi|433590618|ref|YP_007280114.1| - 0.13 12.2 0.0 0.47 10.4 0.0 1.8 1 1 0 1 1 1 0 PAS fold PAS_3 PF08447.6 gi|433590619|ref|YP_007280115.1| - 1e-13 51.1 0.0 2.5e-13 49.9 0.0 1.7 1 0 0 1 1 1 1 PAS fold HATPase_c PF02518.21 gi|433590619|ref|YP_007280115.1| - 5.3e-12 45.4 0.0 1.2e-11 44.3 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.1 gi|433590619|ref|YP_007280115.1| - 8.2e-12 45.0 0.1 1.7e-11 43.9 0.1 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_4 PF08448.5 gi|433590619|ref|YP_007280115.1| - 1.4e-10 41.2 0.8 1e-09 38.3 0.1 2.5 3 0 0 3 3 3 1 PAS fold PAS_9 PF13426.1 gi|433590619|ref|YP_007280115.1| - 2.1e-10 40.9 0.0 4e-09 36.7 0.0 2.8 3 0 0 3 3 3 1 PAS domain PAS PF00989.19 gi|433590619|ref|YP_007280115.1| - 0.00021 21.0 0.0 0.0005 19.8 0.0 1.7 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.1 gi|433590619|ref|YP_007280115.1| - 0.00047 19.9 0.0 0.0017 18.1 0.0 2.0 1 0 0 1 1 1 1 PAS domain HisKA PF00512.20 gi|433590619|ref|YP_007280115.1| - 0.00077 19.4 0.5 0.0027 17.6 0.4 1.9 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c_3 PF13589.1 gi|433590619|ref|YP_007280115.1| - 0.1 12.2 0.0 0.18 11.4 0.0 1.3 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Phosphodiest PF01663.17 gi|433590620|ref|YP_007280116.1| - 3e-48 165.0 0.0 6.9e-48 163.8 0.0 1.5 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Polysacc_deac_1 PF01522.16 gi|433590621|ref|YP_007280117.1| - 2e-09 37.1 0.0 1.7e-08 34.1 0.0 2.0 2 0 0 2 2 2 1 Polysaccharide deacetylase GFO_IDH_MocA PF01408.17 gi|433590622|ref|YP_007280118.1| - 3.9e-26 91.9 0.9 8.2e-26 90.8 0.1 1.9 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|433590622|ref|YP_007280118.1| - 3.3e-10 39.7 0.1 1.1e-09 38.0 0.0 1.8 2 0 0 2 2 2 1 Oxidoreductase family, C-terminal alpha/beta domain Semialdhyde_dh PF01118.19 gi|433590622|ref|YP_007280118.1| - 0.00017 21.9 0.3 0.00033 20.9 0.1 1.6 2 0 0 2 2 2 1 Semialdehyde dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|433590622|ref|YP_007280118.1| - 0.0068 15.5 0.1 0.055 12.6 0.0 2.1 1 1 1 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CoA_binding PF02629.14 gi|433590622|ref|YP_007280118.1| - 0.073 13.5 0.1 0.18 12.3 0.1 1.6 1 0 0 1 1 1 0 CoA binding domain CoA_binding_2 PF13380.1 gi|433590622|ref|YP_007280118.1| - 0.082 13.0 0.3 0.16 12.1 0.2 1.5 1 0 0 1 1 1 0 CoA binding domain F420_oxidored PF03807.12 gi|433590622|ref|YP_007280118.1| - 0.13 12.7 0.2 0.32 11.4 0.1 1.7 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent DUF362 PF04015.7 gi|433590623|ref|YP_007280119.1| - 4.5e-10 39.3 0.0 2.6e-09 36.8 0.0 2.1 1 1 0 1 1 1 1 Domain of unknown function (DUF362) Epimerase PF01370.16 gi|433590624|ref|YP_007280120.1| - 2.2e-34 118.9 0.0 6.1e-34 117.4 0.0 1.7 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|433590624|ref|YP_007280120.1| - 4.3e-25 87.9 0.0 5.9e-25 87.5 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_10 PF13460.1 gi|433590624|ref|YP_007280120.1| - 3.4e-24 85.8 0.8 5.2e-24 85.2 0.5 1.2 1 0 0 1 1 1 1 NADH(P)-binding NAD_binding_4 PF07993.7 gi|433590624|ref|YP_007280120.1| - 2e-17 62.9 0.0 5.4e-11 41.8 0.0 2.1 1 1 1 2 2 2 2 Male sterility protein RmlD_sub_bind PF04321.12 gi|433590624|ref|YP_007280120.1| - 3.7e-09 35.8 0.0 5.3e-09 35.3 0.0 1.3 1 0 0 1 1 1 1 RmlD substrate binding domain NmrA PF05368.8 gi|433590624|ref|YP_007280120.1| - 5.6e-08 32.3 0.0 8.6e-08 31.7 0.0 1.4 1 0 0 1 1 1 1 NmrA-like family Polysacc_synt_2 PF02719.10 gi|433590624|ref|YP_007280120.1| - 2e-06 26.9 0.0 0.0054 15.6 0.0 2.9 2 1 0 2 2 2 2 Polysaccharide biosynthesis protein adh_short PF00106.20 gi|433590624|ref|YP_007280120.1| - 3.3e-05 23.8 5.0 0.00016 21.6 0.7 3.2 3 1 0 3 3 3 1 short chain dehydrogenase Glyco_trans_1_4 PF13692.1 gi|433590625|ref|YP_007280121.1| - 6.3e-12 45.8 0.5 2.5e-11 43.8 0.0 2.0 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.15 gi|433590625|ref|YP_007280121.1| - 5.4e-11 42.1 0.0 9.3e-11 41.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|433590625|ref|YP_007280121.1| - 1.5e-09 38.2 5.3 1.5e-09 38.2 3.7 2.6 2 1 1 3 3 3 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|433590625|ref|YP_007280121.1| - 0.00029 20.6 0.0 0.0012 18.6 0.0 2.0 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_2 PF13477.1 gi|433590625|ref|YP_007280121.1| - 0.00062 19.6 0.0 0.0013 18.6 0.0 1.6 1 1 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.1 gi|433590625|ref|YP_007280121.1| - 0.0012 19.0 0.1 0.0048 17.1 0.0 2.0 2 0 0 2 2 2 1 Glycosyl transferases group 1 DUF354 PF04007.7 gi|433590626|ref|YP_007280122.1| - 3.3e-13 49.2 0.0 2.5e-12 46.3 0.0 1.9 1 1 0 1 1 1 1 Protein of unknown function (DUF354) Glyco_trans_4_4 PF13579.1 gi|433590626|ref|YP_007280122.1| - 0.00013 22.1 0.8 0.00013 22.1 0.6 2.1 2 1 1 3 3 3 1 Glycosyl transferase 4-like domain DUF664 PF04978.7 gi|433590626|ref|YP_007280122.1| - 0.036 14.3 0.1 0.083 13.1 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF664) DZR PF12773.2 gi|433590627|ref|YP_007280123.1| - 0.00075 19.2 0.7 0.00084 19.1 0.5 1.2 1 0 0 1 1 1 1 Double zinc ribbon TFIIS_C PF01096.13 gi|433590627|ref|YP_007280123.1| - 0.0038 16.8 0.5 2.3 7.9 0.0 2.2 2 0 0 2 2 2 2 Transcription factor S-II (TFIIS) HypA PF01155.14 gi|433590627|ref|YP_007280123.1| - 0.0039 16.8 1.4 0.0049 16.5 0.9 1.1 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family RE_MamI PF09567.5 gi|433590627|ref|YP_007280123.1| - 0.015 14.4 0.2 0.015 14.4 0.1 1.1 1 0 0 1 1 1 0 MamI restriction endonuclease zf-ribbon_3 PF13248.1 gi|433590627|ref|YP_007280123.1| - 0.025 13.7 4.4 0.079 12.1 3.2 1.7 1 1 1 2 2 2 0 zinc-ribbon domain zf-C3HC4_3 PF13920.1 gi|433590627|ref|YP_007280123.1| - 0.027 14.1 1.8 0.036 13.7 1.2 1.1 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) zinc_ribbon_2 PF13240.1 gi|433590627|ref|YP_007280123.1| - 0.033 13.6 2.7 0.052 13.0 1.9 1.3 1 0 0 1 1 1 0 zinc-ribbon domain DnaJ_CXXCXGXG PF00684.14 gi|433590627|ref|YP_007280123.1| - 0.05 13.6 1.4 0.056 13.5 1.0 1.1 1 0 0 1 1 1 0 DnaJ central domain zf-RING_4 PF14570.1 gi|433590627|ref|YP_007280123.1| - 0.12 11.9 1.7 0.17 11.4 1.2 1.2 1 0 0 1 1 1 0 RING/Ubox like zinc-binding domain zf-MYND PF01753.13 gi|433590627|ref|YP_007280123.1| - 0.14 12.0 2.4 0.18 11.6 1.6 1.2 1 0 0 1 1 1 0 MYND finger RNA_POL_M_15KD PF02150.11 gi|433590627|ref|YP_007280123.1| - 0.22 11.2 2.5 0.31 10.7 0.1 2.0 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit NRDD PF13597.1 gi|433590627|ref|YP_007280123.1| - 0.35 8.8 1.9 0.44 8.5 1.3 1.0 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase zf-LITAF-like PF10601.4 gi|433590627|ref|YP_007280123.1| - 0.43 10.4 3.6 1.3 8.9 0.2 2.1 1 1 1 2 2 2 0 LITAF-like zinc ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|433590627|ref|YP_007280123.1| - 0.69 9.7 3.6 1.5 8.6 0.1 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|433590627|ref|YP_007280123.1| - 1.6 8.7 5.6 25 4.9 4.0 2.2 1 1 1 2 2 2 0 Zinc ribbon domain UPF0547 PF10571.4 gi|433590627|ref|YP_007280123.1| - 2.2 8.0 5.4 7.9 6.2 4.0 1.7 1 1 1 2 2 2 0 Uncharacterised protein family UPF0547 Glycos_transf_2 PF00535.21 gi|433590628|ref|YP_007280124.1| - 8e-18 64.6 0.3 7e-17 61.6 0.2 2.0 1 1 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|433590628|ref|YP_007280124.1| - 4.2e-05 23.4 3.7 0.00014 21.7 2.6 1.8 1 1 0 1 1 1 1 Glycosyltransferase like family 2 UDPG_MGDP_dh_N PF03721.9 gi|433590629|ref|YP_007280125.1| - 5.2e-40 136.8 0.0 8e-40 136.1 0.0 1.2 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.14 gi|433590629|ref|YP_007280125.1| - 7.8e-16 58.0 0.0 1.4e-15 57.2 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.10 gi|433590629|ref|YP_007280125.1| - 3.2e-14 52.9 0.0 6.7e-14 51.9 0.0 1.6 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NAD_binding_2 PF03446.10 gi|433590629|ref|YP_007280125.1| - 8.7e-07 28.9 0.1 2.6e-06 27.3 0.1 1.8 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase TrkA_N PF02254.13 gi|433590629|ref|YP_007280125.1| - 0.002 18.1 0.4 0.023 14.6 0.1 2.5 2 0 0 2 2 2 1 TrkA-N domain NAD_Gly3P_dh_N PF01210.18 gi|433590629|ref|YP_007280125.1| - 0.0047 16.6 0.7 0.017 14.8 0.1 2.2 3 0 0 3 3 3 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 3HCDH_N PF02737.13 gi|433590629|ref|YP_007280125.1| - 0.007 16.0 0.4 0.012 15.2 0.3 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.17 gi|433590630|ref|YP_007280126.1| - 2.6e-28 98.9 0.5 4.4e-28 98.2 0.3 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold 2-Hacid_dh_C PF02826.14 gi|433590630|ref|YP_007280126.1| - 2.4e-06 26.8 0.0 6.5e-06 25.4 0.0 1.7 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|433590630|ref|YP_007280126.1| - 5.5e-05 23.5 0.1 0.00027 21.2 0.0 2.1 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.10 gi|433590630|ref|YP_007280126.1| - 6.7e-05 22.7 0.4 0.00028 20.7 0.0 2.1 2 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase Semialdhyde_dh PF01118.19 gi|433590630|ref|YP_007280126.1| - 0.0001 22.5 0.1 0.00024 21.3 0.1 1.6 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain IlvN PF07991.7 gi|433590630|ref|YP_007280126.1| - 0.0004 19.8 0.0 0.00074 18.9 0.0 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain GFO_IDH_MocA_C PF02894.12 gi|433590630|ref|YP_007280126.1| - 0.00068 19.4 0.0 0.0017 18.1 0.0 1.7 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain DapB_N PF01113.15 gi|433590630|ref|YP_007280126.1| - 0.0027 17.6 0.4 0.0066 16.3 0.3 1.8 1 1 1 2 2 2 1 Dihydrodipicolinate reductase, N-terminus OCD_Mu_crystall PF02423.10 gi|433590630|ref|YP_007280126.1| - 0.011 14.5 0.2 0.22 10.2 0.2 2.4 3 0 0 3 3 3 0 Ornithine cyclodeaminase/mu-crystallin family Saccharop_dh PF03435.13 gi|433590630|ref|YP_007280126.1| - 0.034 13.1 0.7 0.059 12.3 0.5 1.4 1 0 0 1 1 1 0 Saccharopine dehydrogenase DUF3426 PF11906.3 gi|433590630|ref|YP_007280126.1| - 0.058 13.0 0.0 0.12 12.0 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3426) DegT_DnrJ_EryC1 PF01041.12 gi|433590631|ref|YP_007280127.1| - 1.6e-120 402.4 0.4 1.8e-120 402.2 0.3 1.0 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.16 gi|433590631|ref|YP_007280127.1| - 2.1e-09 36.9 0.8 3.9e-09 36.0 0.6 1.4 1 1 0 1 1 1 1 Beta-eliminating lyase Aminotran_1_2 PF00155.16 gi|433590631|ref|YP_007280127.1| - 5.6e-08 32.1 0.0 8.2e-08 31.5 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.14 gi|433590631|ref|YP_007280127.1| - 0.0022 16.7 0.0 0.0035 16.1 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.15 gi|433590631|ref|YP_007280127.1| - 0.019 13.2 0.0 0.032 12.5 0.0 1.3 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme GPP34 PF05719.6 gi|433590631|ref|YP_007280127.1| - 0.56 10.2 5.3 1.3 9.0 0.1 2.7 3 0 0 3 3 3 0 Golgi phosphoprotein 3 (GPP34) Hexapep PF00132.19 gi|433590632|ref|YP_007280128.1| - 3.3e-29 99.0 18.3 4e-10 38.7 0.6 5.1 4 1 0 5 5 5 5 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|433590632|ref|YP_007280128.1| - 1.3e-19 69.3 13.4 4.7e-08 32.4 0.4 4.9 4 1 1 5 5 5 5 Hexapeptide repeat of succinyl-transferase CRISPR_Cse2 PF09485.5 gi|433590633|ref|YP_007280129.1| - 0.0023 17.9 1.4 0.016 15.2 0.0 2.4 3 0 0 3 3 3 1 CRISPR-associated protein Cse2 (CRISPR_cse2) DoxX_2 PF13564.1 gi|433590633|ref|YP_007280129.1| - 0.0049 16.8 1.6 0.0079 16.1 1.1 1.3 1 0 0 1 1 1 1 DoxX-like family Flavi_NS2B PF01002.14 gi|433590633|ref|YP_007280129.1| - 0.17 11.4 4.7 0.81 9.2 4.0 1.5 2 0 0 2 2 2 0 Flavivirus non-structural protein NS2B DUF1616 PF07760.6 gi|433590634|ref|YP_007280130.1| - 1.6e-42 145.6 0.0 1.9e-42 145.4 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) Bac_export_2 PF01312.14 gi|433590634|ref|YP_007280130.1| - 0.033 13.0 0.1 0.052 12.4 0.1 1.2 1 0 0 1 1 1 0 FlhB HrpN YscU SpaS Family DUF4131 PF13567.1 gi|433590634|ref|YP_007280130.1| - 0.051 12.9 10.0 0.14 11.5 4.1 2.8 2 1 0 2 2 2 0 Domain of unknown function (DUF4131) A2M_N_2 PF07703.9 gi|433590634|ref|YP_007280130.1| - 0.13 12.0 0.4 0.28 10.9 0.2 1.7 1 1 0 1 1 1 0 Alpha-2-macroglobulin family N-terminal region ABC2_membrane_4 PF12730.2 gi|433590634|ref|YP_007280130.1| - 1.1 8.4 8.0 20 4.2 0.1 2.9 2 1 1 3 3 3 0 ABC-2 family transporter protein VirB8 PF04335.8 gi|433590634|ref|YP_007280130.1| - 1.4 8.4 4.1 2.4 7.7 0.3 2.5 2 0 0 2 2 2 0 VirB8 protein UbiA PF01040.13 gi|433590634|ref|YP_007280130.1| - 1.5 8.0 16.4 0.47 9.6 4.7 2.1 1 1 1 2 2 2 0 UbiA prenyltransferase family PadR PF03551.9 gi|433590635|ref|YP_007280131.1| - 1.7e-13 50.1 0.4 1.9e-13 49.9 0.3 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_27 PF13463.1 gi|433590635|ref|YP_007280131.1| - 0.00089 19.5 0.0 0.0012 19.1 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_45 PF14947.1 gi|433590635|ref|YP_007280131.1| - 0.0012 18.6 0.1 0.0016 18.2 0.1 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_34 PF13601.1 gi|433590635|ref|YP_007280131.1| - 0.0091 16.0 0.0 0.012 15.6 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain MotA_activ PF09114.5 gi|433590635|ref|YP_007280131.1| - 0.044 13.5 0.0 0.052 13.3 0.0 1.2 1 0 0 1 1 1 0 Transcription factor MotA, activation domain DUF1495 PF07381.6 gi|433590635|ref|YP_007280131.1| - 0.14 11.8 0.1 0.19 11.4 0.1 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) HTH_20 PF12840.2 gi|433590636|ref|YP_007280132.1| - 8.8e-07 28.6 0.0 1.5e-06 27.8 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|433590636|ref|YP_007280132.1| - 0.00025 20.6 0.0 0.00037 20.1 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.7 gi|433590636|ref|YP_007280132.1| - 0.0014 18.2 0.2 0.0023 17.5 0.1 1.3 1 0 0 1 1 1 1 HTH domain HTH_5 PF01022.15 gi|433590636|ref|YP_007280132.1| - 0.0014 18.2 0.0 0.0023 17.5 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|433590636|ref|YP_007280132.1| - 0.0017 18.0 0.0 0.003 17.1 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|433590636|ref|YP_007280132.1| - 0.0023 17.2 0.1 0.0033 16.7 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.1 gi|433590636|ref|YP_007280132.1| - 0.0069 16.6 0.1 0.011 16.0 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain DUF2513 PF10711.4 gi|433590636|ref|YP_007280132.1| - 0.0093 16.0 0.0 0.012 15.6 0.0 1.2 1 0 0 1 1 1 1 Hypothetical protein (DUF2513) HTH_IclR PF09339.5 gi|433590636|ref|YP_007280132.1| - 0.039 13.5 0.0 0.059 12.9 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_AsnC-type PF13404.1 gi|433590636|ref|YP_007280132.1| - 0.1 12.1 0.0 0.17 11.4 0.0 1.5 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain MarR PF01047.17 gi|433590636|ref|YP_007280132.1| - 0.11 12.1 0.1 0.18 11.5 0.0 1.3 1 0 0 1 1 1 0 MarR family FUR PF01475.14 gi|433590636|ref|YP_007280132.1| - 0.11 12.3 0.0 0.15 11.9 0.0 1.2 1 0 0 1 1 1 0 Ferric uptake regulator family HypA PF01155.14 gi|433590638|ref|YP_007280134.1| - 0.0078 15.8 0.3 0.0097 15.5 0.2 1.1 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family DUF164 PF02591.10 gi|433590638|ref|YP_007280134.1| - 0.0093 15.7 0.7 0.012 15.3 0.5 1.2 1 0 0 1 1 1 1 Putative zinc ribbon domain zf-DNL PF05180.7 gi|433590638|ref|YP_007280134.1| - 0.014 15.0 1.2 0.019 14.6 0.8 1.1 1 0 0 1 1 1 0 DNL zinc finger Zn-ribbon_8 PF09723.5 gi|433590638|ref|YP_007280134.1| - 0.061 13.2 2.5 0.83 9.6 0.1 2.1 1 1 2 3 3 3 0 Zinc ribbon domain DZR PF12773.2 gi|433590638|ref|YP_007280134.1| - 0.068 13.0 2.3 0.16 11.7 1.6 1.6 1 1 0 1 1 1 0 Double zinc ribbon zf-CSL PF05207.8 gi|433590638|ref|YP_007280134.1| - 0.1 12.1 0.2 0.14 11.7 0.1 1.2 1 0 0 1 1 1 0 CSL zinc finger RNHCP PF12647.2 gi|433590638|ref|YP_007280134.1| - 0.12 12.2 1.5 0.17 11.7 1.0 1.4 1 1 0 1 1 1 0 RNHCP domain Nudix_N_2 PF14803.1 gi|433590638|ref|YP_007280134.1| - 0.21 11.3 1.8 1.8 8.2 1.2 2.1 1 1 0 1 1 1 0 Nudix N-terminal DUF35_N PF12172.3 gi|433590638|ref|YP_007280134.1| - 0.21 11.5 0.8 0.21 11.5 0.5 2.1 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Prok-RING_1 PF14446.1 gi|433590638|ref|YP_007280134.1| - 0.21 11.3 2.4 2.5 7.9 1.7 2.0 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 zinc_ribbon_4 PF13717.1 gi|433590638|ref|YP_007280134.1| - 0.27 10.9 1.5 5.8 6.6 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|433590638|ref|YP_007280134.1| - 0.32 10.6 1.8 5.3 6.7 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|433590638|ref|YP_007280134.1| - 0.34 10.1 3.4 1.3 8.3 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-LITAF-like PF10601.4 gi|433590638|ref|YP_007280134.1| - 0.6 10.0 4.3 1.9 8.4 0.2 2.1 1 1 0 2 2 2 0 LITAF-like zinc ribbon domain zinc_ribbon_2 PF13240.1 gi|433590638|ref|YP_007280134.1| - 0.88 9.1 4.5 4.6 6.8 3.1 2.0 1 1 0 1 1 1 0 zinc-ribbon domain Exo5 PF09810.4 gi|433590639|ref|YP_007280135.1| - 0.074 12.2 0.0 0.086 12.0 0.0 1.1 1 0 0 1 1 1 0 Exonuclease V - a 5' deoxyribonuclease HTH_20 PF12840.2 gi|433590639|ref|YP_007280135.1| - 0.11 12.3 0.0 0.7 9.7 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain Prion_bPrPp PF11587.3 gi|433590639|ref|YP_007280135.1| - 8.2 6.1 6.0 3.4 7.4 0.5 2.3 2 0 0 2 2 2 0 Major prion protein bPrPp - N terminal Transglut_C PF00927.17 gi|433590640|ref|YP_007280136.1| - 0.0065 16.4 0.0 0.014 15.4 0.0 1.5 1 0 0 1 1 1 1 Transglutaminase family, C-terminal ig like domain HTH_IclR PF09339.5 gi|433590641|ref|YP_007280137.1| - 2.7e-05 23.6 0.0 0.00029 20.3 0.0 2.3 2 1 0 2 2 2 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|433590641|ref|YP_007280137.1| - 0.00031 20.3 0.0 0.00067 19.2 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|433590641|ref|YP_007280137.1| - 0.0006 19.1 0.0 0.00096 18.4 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.17 gi|433590641|ref|YP_007280137.1| - 0.013 15.2 0.0 0.023 14.4 0.0 1.3 1 0 0 1 1 1 0 MarR family HTH_5 PF01022.15 gi|433590641|ref|YP_007280137.1| - 0.063 12.9 0.0 0.15 11.7 0.0 1.6 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family Epimerase PF01370.16 gi|433590642|ref|YP_007280138.1| - 1.1e-57 195.2 0.0 1.3e-57 194.9 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|433590642|ref|YP_007280138.1| - 5.7e-19 67.8 0.0 1e-18 67.0 0.0 1.4 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.10 gi|433590642|ref|YP_007280138.1| - 1.4e-16 60.2 0.2 4e-15 55.4 0.1 2.6 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.12 gi|433590642|ref|YP_007280138.1| - 6e-15 54.8 0.3 7.6e-15 54.5 0.2 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.7 gi|433590642|ref|YP_007280138.1| - 1e-10 41.0 0.1 8.2e-07 28.1 0.0 2.3 1 1 1 2 2 2 2 Male sterility protein NAD_binding_10 PF13460.1 gi|433590642|ref|YP_007280138.1| - 3.8e-09 36.8 0.8 8.3e-09 35.7 0.5 1.6 1 1 0 1 1 1 1 NADH(P)-binding adh_short PF00106.20 gi|433590642|ref|YP_007280138.1| - 4.5e-06 26.6 2.7 4.5e-06 26.6 1.9 2.0 2 1 0 2 2 2 1 short chain dehydrogenase Epimerase_Csub PF13950.1 gi|433590642|ref|YP_007280138.1| - 0.00015 21.6 0.0 0.00029 20.6 0.0 1.5 1 0 0 1 1 1 1 UDP-glucose 4-epimerase C-term subunit NmrA PF05368.8 gi|433590642|ref|YP_007280138.1| - 0.00038 19.7 0.3 0.0012 18.1 0.1 1.9 2 0 0 2 2 2 1 NmrA-like family KR PF08659.5 gi|433590642|ref|YP_007280138.1| - 0.0083 15.8 2.4 0.34 10.5 1.7 2.4 1 1 0 1 1 1 1 KR domain Methyltransf_17 PF12692.2 gi|433590642|ref|YP_007280138.1| - 0.013 15.2 0.2 0.047 13.3 0.0 1.9 2 0 0 2 2 2 0 S-adenosyl-L-methionine methyltransferase TrkA_N PF02254.13 gi|433590642|ref|YP_007280138.1| - 0.11 12.4 0.9 0.28 11.1 0.1 2.1 2 1 0 2 2 2 0 TrkA-N domain DUF457 PF04307.9 gi|433590643|ref|YP_007280139.1| - 0.0025 17.1 1.3 0.0041 16.4 0.9 1.4 1 1 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) Amidohydro_4 PF13147.1 gi|433590644|ref|YP_007280140.1| - 1.6e-31 110.3 1.1 2.3e-31 109.8 0.8 1.2 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_1 PF01979.15 gi|433590644|ref|YP_007280140.1| - 1.4e-18 67.7 0.0 2.6e-18 66.7 0.0 1.5 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|433590644|ref|YP_007280140.1| - 2.7e-15 55.9 0.9 1.3e-13 50.4 0.2 2.7 2 0 0 2 2 2 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|433590644|ref|YP_007280140.1| - 6.7e-09 35.4 1.8 1.4e-05 24.5 0.2 3.1 1 1 0 2 2 2 2 Amidohydrolase family Urease_alpha PF00449.15 gi|433590644|ref|YP_007280140.1| - 0.053 13.6 0.2 0.37 10.9 0.1 2.2 2 0 0 2 2 2 0 Urease alpha-subunit, N-terminal domain DHO_dh PF01180.16 gi|433590646|ref|YP_007280142.1| - 3e-85 285.7 0.0 3.4e-85 285.5 0.0 1.0 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase NMO PF03060.10 gi|433590646|ref|YP_007280142.1| - 0.015 14.4 0.1 0.031 13.4 0.0 1.4 1 0 0 1 1 1 0 Nitronate monooxygenase AP_endonuc_2 PF01261.19 gi|433590646|ref|YP_007280142.1| - 0.016 14.4 0.0 0.043 13.1 0.0 1.7 1 1 0 1 1 1 0 Xylose isomerase-like TIM barrel Ub-Mut7C PF14451.1 gi|433590646|ref|YP_007280142.1| - 0.12 11.9 0.1 0.28 10.7 0.0 1.5 1 0 0 1 1 1 0 Mut7-C ubiquitin MmgE_PrpD PF03972.9 gi|433590647|ref|YP_007280143.1| - 6.5e-79 265.1 6.9 8.3e-79 264.8 4.8 1.0 1 0 0 1 1 1 1 MmgE/PrpD family MaoC_dehydratas PF01575.14 gi|433590648|ref|YP_007280144.1| - 1.5e-08 34.0 0.1 3.3e-08 32.9 0.1 1.6 1 1 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.1 gi|433590648|ref|YP_007280144.1| - 8.8e-08 32.0 0.4 2.7e-06 27.1 0.3 2.1 1 1 0 1 1 1 1 N-terminal half of MaoC dehydratase 4HBT PF03061.17 gi|433590648|ref|YP_007280144.1| - 0.027 14.5 0.1 0.041 14.0 0.0 1.4 1 0 0 1 1 1 0 Thioesterase superfamily DUF4442 PF14539.1 gi|433590648|ref|YP_007280144.1| - 0.11 12.4 0.0 0.14 12.1 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4442) CoA_transf_3 PF02515.12 gi|433590649|ref|YP_007280145.1| - 5.4e-58 195.3 0.0 7.3e-58 194.9 0.0 1.2 1 0 0 1 1 1 1 CoA-transferase family III MaoC_dehydratas PF01575.14 gi|433590650|ref|YP_007280146.1| - 1.3e-18 66.5 0.4 1.8e-18 66.0 0.3 1.1 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.1 gi|433590650|ref|YP_007280146.1| - 0.0015 18.2 0.1 0.0024 17.6 0.1 1.4 1 0 0 1 1 1 1 N-terminal half of MaoC dehydratase Acyl-CoA_dh_1 PF00441.19 gi|433590651|ref|YP_007280147.1| - 1.3e-36 125.9 1.9 2.1e-36 125.2 1.3 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|433590651|ref|YP_007280147.1| - 9.7e-24 84.1 0.2 2.3e-23 82.9 0.2 1.7 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.14 gi|433590651|ref|YP_007280147.1| - 4.8e-19 67.6 0.0 1.3e-18 66.2 0.0 1.7 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.6 gi|433590651|ref|YP_007280147.1| - 5.8e-19 68.6 7.6 1.1e-18 67.7 5.3 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain AMP-binding PF00501.23 gi|433590652|ref|YP_007280148.1| - 3.1e-86 289.3 0.0 3.7e-86 289.1 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|433590652|ref|YP_007280148.1| - 4.8e-12 46.6 2.4 1.2e-11 45.3 1.6 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain 2Fe-2S_thioredx PF01257.14 gi|433590653|ref|YP_007280149.1| - 0.00037 20.0 0.0 0.00051 19.6 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin-like [2Fe-2S] ferredoxin DUF1636 PF07845.6 gi|433590653|ref|YP_007280149.1| - 0.0068 16.6 0.0 0.0083 16.3 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1636) Suc_Fer-like PF06999.7 gi|433590653|ref|YP_007280149.1| - 0.068 13.1 0.1 0.26 11.2 0.1 1.8 1 1 0 1 1 1 0 Sucrase/ferredoxin-like Pro_CA PF00484.14 gi|433590653|ref|YP_007280149.1| - 0.13 12.2 0.1 0.16 11.9 0.1 1.1 1 0 0 1 1 1 0 Carbonic anhydrase CbtA PF09490.5 gi|433590654|ref|YP_007280150.1| - 3.3e-14 52.7 21.2 4.4e-14 52.3 14.7 1.2 1 0 0 1 1 1 1 Probable cobalt transporter subunit (CbtA) FhuF PF06276.7 gi|433590654|ref|YP_007280150.1| - 0.0044 16.9 0.3 0.011 15.7 0.2 1.6 1 0 0 1 1 1 1 Ferric iron reductase FhuF-like transporter CbtB PF09489.5 gi|433590655|ref|YP_007280151.1| - 3.6e-08 33.1 8.0 5.4e-08 32.6 5.5 1.3 1 1 0 1 1 1 1 Probable cobalt transporter subunit (CbtB) MNHE PF01899.11 gi|433590656|ref|YP_007280152.1| - 9.2e-32 109.8 2.0 1.3e-31 109.3 1.4 1.2 1 0 0 1 1 1 1 Na+/H+ ion antiporter subunit MrpF_PhaF PF04066.8 gi|433590657|ref|YP_007280153.1| - 3.2e-18 65.7 2.9 3.2e-18 65.7 2.0 2.0 2 0 0 2 2 2 1 Multiple resistance and pH regulation protein F (MrpF / PhaF) DUF2109 PF09882.4 gi|433590657|ref|YP_007280153.1| - 0.021 14.7 2.3 0.027 14.3 1.6 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2109) 3Beta_HSD PF01073.14 gi|433590657|ref|YP_007280153.1| - 0.081 11.6 0.0 0.099 11.3 0.0 1.1 1 0 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family PPE PF00823.14 gi|433590657|ref|YP_007280153.1| - 0.14 11.9 0.1 0.15 11.9 0.0 1.1 1 0 0 1 1 1 0 PPE family PhaG_MnhG_YufB PF03334.9 gi|433590658|ref|YP_007280154.1| - 3.6e-25 87.8 8.7 4.5e-25 87.5 6.0 1.1 1 0 0 1 1 1 1 Na+/H+ antiporter subunit DUF4040 PF13244.1 gi|433590659|ref|YP_007280155.1| - 3.6e-20 71.7 12.6 3.6e-20 71.7 8.7 2.7 3 0 0 3 3 3 1 Domain of unknown function (DUF4040) Virul_fac_BrkB PF03631.10 gi|433590659|ref|YP_007280155.1| - 0.15 11.3 15.9 0.029 13.7 7.1 2.2 1 1 1 2 2 2 0 Virulence factor BrkB YqhR PF11085.3 gi|433590659|ref|YP_007280155.1| - 0.3 10.6 2.4 0.44 10.0 1.6 1.3 1 0 0 1 1 1 0 Conserved membrane protein YqhR DUF2108 PF09881.4 gi|433590659|ref|YP_007280155.1| - 2.3 8.1 15.7 0.14 12.0 5.8 2.4 3 0 0 3 3 3 0 Predicted membrane protein (DUF2108) Trp_oprn_chp PF09534.5 gi|433590659|ref|YP_007280155.1| - 5.9 6.4 12.5 0.84 9.2 5.4 1.8 1 1 1 2 2 2 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) MnhB PF04039.8 gi|433590660|ref|YP_007280156.1| - 2.1e-17 63.3 17.4 3.5e-17 62.6 12.0 1.3 1 1 0 1 1 1 1 Domain related to MnhB subunit of Na+/H+ antiporter Virul_fac_BrkB PF03631.10 gi|433590660|ref|YP_007280156.1| - 0.01 15.2 1.6 0.012 15.0 0.5 1.4 1 1 0 1 1 1 0 Virulence factor BrkB DUF373 PF04123.8 gi|433590660|ref|YP_007280156.1| - 0.049 12.6 2.2 0.06 12.3 1.5 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF373) DUF998 PF06197.8 gi|433590660|ref|YP_007280156.1| - 0.36 10.1 9.1 0.42 9.8 3.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF998) DUF1469 PF07332.6 gi|433590660|ref|YP_007280156.1| - 7.6 6.2 6.9 23 4.7 3.6 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1469) Oxidored_q2 PF00420.19 gi|433590661|ref|YP_007280157.1| - 1.5e-23 82.2 3.1 1.7e-23 82.0 2.2 1.1 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DUF2108 PF09881.4 gi|433590661|ref|YP_007280157.1| - 0.00084 19.1 1.3 0.00084 19.1 0.9 2.1 2 0 0 2 2 2 1 Predicted membrane protein (DUF2108) O-ag_pol_Wzy PF14296.1 gi|433590661|ref|YP_007280157.1| - 0.037 12.6 1.5 0.037 12.6 1.0 1.1 1 0 0 1 1 1 0 O-antigen polysaccharide polymerase Wzy PMP1_2 PF08114.6 gi|433590661|ref|YP_007280157.1| - 0.91 9.0 7.1 2.6 7.5 1.8 2.4 2 0 0 2 2 2 0 ATPase proteolipid family DUF2892 PF11127.3 gi|433590661|ref|YP_007280157.1| - 2.8 7.8 8.3 0.92 9.3 0.8 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2892) DUF202 PF02656.10 gi|433590661|ref|YP_007280157.1| - 3.4 7.9 4.8 1.8 8.8 0.5 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF202) CD47 PF04549.9 gi|433590661|ref|YP_007280157.1| - 6.4 6.7 11.5 0.46 10.4 2.9 2.0 2 0 0 2 2 2 0 CD47 transmembrane region Oxidored_q1 PF00361.15 gi|433590662|ref|YP_007280158.1| - 5.8e-51 173.3 6.9 1.1e-50 172.4 4.8 1.4 1 0 0 1 1 1 1 NADH-Ubiquinone/plastoquinone (complex I), various chains NADHdeh_related PF10125.4 gi|433590662|ref|YP_007280158.1| - 4.1e-06 26.1 5.8 4.1e-06 26.1 4.0 2.6 2 0 0 2 2 2 1 NADH dehydrogenase I, subunit N related protein Oxidored_q1 PF00361.15 gi|433590663|ref|YP_007280159.1| - 3.4e-52 177.3 10.4 4e-51 173.8 7.2 2.2 1 1 0 1 1 1 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1_N PF00662.15 gi|433590663|ref|YP_007280159.1| - 0.0029 17.1 0.1 0.0088 15.5 0.1 1.8 1 0 0 1 1 1 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Oxidored_q1 PF00361.15 gi|433590664|ref|YP_007280160.1| - 7.2e-36 123.8 11.1 1.7e-35 122.5 7.7 1.7 1 0 0 1 1 1 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Phage_int_SAM_1 PF02899.12 gi|433590665|ref|YP_007280161.1| - 3.4e-07 30.3 0.2 3.4e-07 30.3 0.1 3.0 3 0 0 3 3 3 1 Phage integrase, N-terminal SAM-like domain Phage_integrase PF00589.17 gi|433590665|ref|YP_007280161.1| - 0.0026 17.4 0.0 0.027 14.1 0.0 2.4 1 1 0 1 1 1 1 Phage integrase family Phage_int_SAM_4 PF13495.1 gi|433590665|ref|YP_007280161.1| - 0.069 13.4 0.0 0.21 11.9 0.0 1.8 1 1 0 1 1 1 0 Phage integrase, N-terminal SAM-like domain SBP_bac_5 PF00496.17 gi|433590666|ref|YP_007280162.1| - 7.1e-75 252.1 0.1 1.1e-74 251.5 0.1 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle TAT_signal PF10518.4 gi|433590666|ref|YP_007280162.1| - 1.8 8.7 6.2 5.4 7.2 4.3 1.8 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence BPD_transp_1 PF00528.17 gi|433590667|ref|YP_007280163.1| - 2e-42 144.8 9.8 3.5e-42 144.0 6.8 1.4 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component Renin_r PF07850.9 gi|433590667|ref|YP_007280163.1| - 1.2 9.4 4.1 2.8 8.3 0.1 2.7 3 0 0 3 3 3 0 Renin receptor-like protein BPD_transp_1 PF00528.17 gi|433590668|ref|YP_007280164.1| - 2.3e-34 118.5 6.2 2.3e-34 118.5 4.3 1.7 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|433590668|ref|YP_007280164.1| - 8.2e-12 44.3 1.7 4.3e-11 42.0 0.1 2.5 2 0 0 2 2 2 1 N-terminal TM domain of oligopeptide transport permease C Phage_H_T_join PF05521.6 gi|433590668|ref|YP_007280164.1| - 0.011 15.9 0.0 0.018 15.2 0.0 1.2 1 0 0 1 1 1 0 Phage head-tail joining protein Mem_trans PF03547.13 gi|433590668|ref|YP_007280164.1| - 1.9 6.6 4.9 0.74 8.0 1.6 1.6 2 0 0 2 2 2 0 Membrane transport protein ABC_tran PF00005.22 gi|433590669|ref|YP_007280165.1| - 3e-64 215.4 0.0 8.7e-34 116.7 0.0 2.2 2 0 0 2 2 2 2 ABC transporter oligo_HPY PF08352.7 gi|433590669|ref|YP_007280165.1| - 4.8e-40 135.7 8.1 2.3e-19 69.4 1.5 2.6 2 0 0 2 2 2 2 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|433590669|ref|YP_007280165.1| - 4.4e-20 72.8 0.0 3.2e-07 30.6 0.0 4.1 2 2 1 4 4 4 2 AAA domain SMC_N PF02463.14 gi|433590669|ref|YP_007280165.1| - 2.6e-08 33.3 0.8 0.0096 15.1 0.0 3.7 2 2 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|433590669|ref|YP_007280165.1| - 4.7e-07 30.0 2.0 0.07 13.2 0.2 3.9 2 2 0 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|433590669|ref|YP_007280165.1| - 6.4e-07 28.8 0.7 0.012 15.1 0.0 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_10 PF12846.2 gi|433590669|ref|YP_007280165.1| - 9.3e-06 25.2 0.1 0.57 9.5 0.0 3.3 2 2 1 4 4 4 2 AAA-like domain Mg_chelatase PF01078.16 gi|433590669|ref|YP_007280165.1| - 3.6e-05 23.0 0.0 0.0064 15.6 0.0 2.7 3 0 0 3 3 3 1 Magnesium chelatase, subunit ChlI AAA_16 PF13191.1 gi|433590669|ref|YP_007280165.1| - 4.2e-05 23.5 11.3 0.0063 16.5 1.5 3.4 2 2 0 2 2 2 2 AAA ATPase domain Sigma54_activat PF00158.21 gi|433590669|ref|YP_007280165.1| - 5.6e-05 22.6 0.5 0.89 9.0 0.0 3.3 3 0 0 3 3 3 2 Sigma-54 interaction domain NB-ARC PF00931.17 gi|433590669|ref|YP_007280165.1| - 0.00015 20.7 0.6 0.15 10.8 0.2 2.2 2 0 0 2 2 2 2 NB-ARC domain AAA_33 PF13671.1 gi|433590669|ref|YP_007280165.1| - 0.00022 21.1 0.8 0.87 9.4 0.0 3.1 2 2 0 2 2 2 2 AAA domain AAA_25 PF13481.1 gi|433590669|ref|YP_007280165.1| - 0.00025 20.5 5.6 0.58 9.5 1.5 4.0 3 1 0 3 3 3 2 AAA domain SbcCD_C PF13558.1 gi|433590669|ref|YP_007280165.1| - 0.00031 20.5 1.6 0.62 10.0 0.0 3.2 2 2 0 2 2 2 2 Putative exonuclease SbcCD, C subunit DUF258 PF03193.11 gi|433590669|ref|YP_007280165.1| - 0.00054 19.1 4.1 0.014 14.5 0.0 2.8 3 0 0 3 3 3 1 Protein of unknown function, DUF258 NACHT PF05729.7 gi|433590669|ref|YP_007280165.1| - 0.00097 18.8 0.6 0.34 10.5 0.1 2.4 2 0 0 2 2 2 1 NACHT domain MMR_HSR1 PF01926.18 gi|433590669|ref|YP_007280165.1| - 0.0015 18.4 0.0 0.22 11.5 0.0 2.6 2 0 0 2 2 2 1 50S ribosome-binding GTPase AAA_5 PF07728.9 gi|433590669|ref|YP_007280165.1| - 0.0017 18.0 1.8 0.74 9.5 0.1 3.2 3 0 0 3 3 3 1 AAA domain (dynein-related subfamily) Zeta_toxin PF06414.7 gi|433590669|ref|YP_007280165.1| - 0.0024 16.9 0.3 1.1 8.2 0.1 2.3 2 0 0 2 2 2 2 Zeta toxin AAA_17 PF13207.1 gi|433590669|ref|YP_007280165.1| - 0.0032 18.2 0.3 4.3 8.1 0.3 2.9 2 0 0 2 2 2 0 AAA domain Miro PF08477.8 gi|433590669|ref|YP_007280165.1| - 0.0038 17.7 0.1 2.2 8.8 0.0 2.4 2 0 0 2 2 2 1 Miro-like protein AAA_18 PF13238.1 gi|433590669|ref|YP_007280165.1| - 0.0071 16.6 0.1 3.2 8.0 0.0 2.7 3 0 0 3 3 2 1 AAA domain AIG1 PF04548.11 gi|433590669|ref|YP_007280165.1| - 0.0072 15.4 0.0 0.27 10.3 0.0 2.2 2 0 0 2 2 2 1 AIG1 family RNA_helicase PF00910.17 gi|433590669|ref|YP_007280165.1| - 0.0087 16.2 0.0 1.3 9.1 0.0 2.3 2 0 0 2 2 2 1 RNA helicase AAA PF00004.24 gi|433590669|ref|YP_007280165.1| - 0.0089 16.2 0.5 4.6 7.4 0.1 3.3 4 0 0 4 4 3 0 ATPase family associated with various cellular activities (AAA) ATP-synt_ab PF00006.20 gi|433590669|ref|YP_007280165.1| - 0.012 15.1 0.0 3.8 6.9 0.0 2.5 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain DUF87 PF01935.12 gi|433590669|ref|YP_007280165.1| - 0.017 14.9 2.5 2.7 7.7 0.2 2.3 2 0 0 2 2 2 0 Domain of unknown function DUF87 IstB_IS21 PF01695.12 gi|433590669|ref|YP_007280165.1| - 0.017 14.5 0.1 2 7.8 0.0 2.6 2 0 0 2 2 2 0 IstB-like ATP binding protein MobB PF03205.9 gi|433590669|ref|YP_007280165.1| - 0.032 13.9 0.8 3.8 7.2 0.1 2.4 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B PRK PF00485.13 gi|433590669|ref|YP_007280165.1| - 0.04 13.4 0.6 8.6 5.8 0.1 2.3 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family UPF0079 PF02367.12 gi|433590669|ref|YP_007280165.1| - 0.061 12.9 0.8 2.4 7.8 0.1 2.3 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 Sigma54_activ_2 PF14532.1 gi|433590669|ref|YP_007280165.1| - 0.065 13.2 0.2 9.7 6.2 0.0 2.7 3 0 0 3 3 2 0 Sigma-54 interaction domain KaiC PF06745.8 gi|433590669|ref|YP_007280165.1| - 0.16 11.0 1.2 6.9 5.7 0.0 2.5 2 0 0 2 2 2 0 KaiC AAA_23 PF13476.1 gi|433590669|ref|YP_007280165.1| - 0.2 11.9 0.1 9.5 6.4 0.0 2.1 2 0 0 2 2 2 0 AAA domain Hpr_kinase_C PF07475.7 gi|433590669|ref|YP_007280165.1| - 1.9 7.7 4.1 19 4.5 0.1 2.3 2 0 0 2 2 2 0 HPr Serine kinase C-terminal domain zf-IS66 PF13005.2 gi|433590672|ref|YP_007280168.1| - 0.023 14.6 2.0 1.9 8.5 0.1 2.2 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 DUF4109 PF13397.1 gi|433590672|ref|YP_007280168.1| - 0.028 14.7 0.1 0.028 14.7 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4109) DNA_RNApol_7kD PF03604.8 gi|433590672|ref|YP_007280168.1| - 0.03 13.7 1.2 1.8 8.0 0.0 2.2 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit A2L_zn_ribbon PF08792.5 gi|433590672|ref|YP_007280168.1| - 0.05 13.0 0.5 0.84 9.1 0.1 2.1 2 0 0 2 2 2 0 A2L zinc ribbon domain DZR PF12773.2 gi|433590672|ref|YP_007280168.1| - 0.12 12.2 1.1 0.19 11.5 0.7 1.5 1 1 0 1 1 1 0 Double zinc ribbon GFA PF04828.9 gi|433590672|ref|YP_007280168.1| - 0.13 12.1 0.7 0.16 11.9 0.0 1.5 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme zf-CSL PF05207.8 gi|433590672|ref|YP_007280168.1| - 0.16 11.4 2.6 0.25 10.9 1.8 1.3 1 1 0 1 1 1 0 CSL zinc finger UbiA PF01040.13 gi|433590673|ref|YP_007280169.1| - 1.6e-10 40.6 15.6 1.6e-10 40.6 10.8 1.8 1 1 1 2 2 2 2 UbiA prenyltransferase family O-antigen_lig PF13425.1 gi|433590673|ref|YP_007280169.1| - 1 9.3 14.1 1.2 9.0 7.7 2.7 1 1 1 2 2 2 0 O-antigen ligase like membrane protein Wzy_C PF04932.10 gi|433590673|ref|YP_007280169.1| - 1.7 8.4 9.0 8.5 6.1 6.1 2.2 1 1 0 1 1 1 0 O-Antigen ligase HATPase_c PF02518.21 gi|433590674|ref|YP_007280170.1| - 1.5e-13 50.4 0.0 2.7e-13 49.5 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.1 gi|433590674|ref|YP_007280170.1| - 1.2e-10 41.2 0.2 1.9e-10 40.5 0.1 1.3 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_8 PF13188.1 gi|433590674|ref|YP_007280170.1| - 0.0013 18.5 0.0 0.0041 16.9 0.0 1.8 1 0 0 1 1 1 1 PAS domain HATPase_c_3 PF13589.1 gi|433590674|ref|YP_007280170.1| - 0.0027 17.3 0.0 0.005 16.4 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_5 PF14501.1 gi|433590674|ref|YP_007280170.1| - 0.015 14.9 0.0 0.03 14.0 0.0 1.5 1 0 0 1 1 1 0 GHKL domain HisKA PF00512.20 gi|433590674|ref|YP_007280170.1| - 0.023 14.6 0.0 0.055 13.4 0.0 1.6 1 0 0 1 1 1 0 His Kinase A (phospho-acceptor) domain GLE1 PF07817.8 gi|433590674|ref|YP_007280170.1| - 0.069 12.0 1.1 0.13 11.2 0.7 1.3 1 0 0 1 1 1 0 GLE1-like protein DUF1129 PF06570.6 gi|433590674|ref|YP_007280170.1| - 0.54 9.5 9.5 1.2 8.4 3.1 2.8 2 1 1 3 3 3 0 Protein of unknown function (DUF1129) SPC25 PF06703.6 gi|433590674|ref|YP_007280170.1| - 1.8 8.1 3.9 20 4.6 0.3 2.5 2 1 0 2 2 2 0 Microsomal signal peptidase 25 kDa subunit (SPC25) HTH_20 PF12840.2 gi|433590675|ref|YP_007280171.1| - 2.7e-08 33.4 0.7 4.1e-08 32.9 0.5 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|433590675|ref|YP_007280171.1| - 1.3e-05 24.5 0.0 2.1e-05 23.8 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding FUR PF01475.14 gi|433590675|ref|YP_007280171.1| - 5.9e-05 22.9 0.0 7.5e-05 22.6 0.0 1.1 1 0 0 1 1 1 1 Ferric uptake regulator family MarR_2 PF12802.2 gi|433590675|ref|YP_007280171.1| - 0.00022 20.8 0.1 0.00033 20.2 0.1 1.2 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|433590675|ref|YP_007280171.1| - 0.00034 20.1 0.1 0.00071 19.1 0.1 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.14 gi|433590675|ref|YP_007280171.1| - 0.00095 18.8 0.0 0.0016 18.1 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.15 gi|433590675|ref|YP_007280171.1| - 0.0053 16.4 0.0 0.0093 15.6 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_11 PF08279.7 gi|433590675|ref|YP_007280171.1| - 0.0077 15.8 0.1 0.012 15.2 0.0 1.3 1 0 0 1 1 1 1 HTH domain HTH_AsnC-type PF13404.1 gi|433590675|ref|YP_007280171.1| - 0.0095 15.4 0.1 0.018 14.5 0.1 1.6 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain PadR PF03551.9 gi|433590675|ref|YP_007280171.1| - 0.015 15.0 0.0 0.022 14.5 0.0 1.4 1 1 0 1 1 1 0 Transcriptional regulator PadR-like family HTH_27 PF13463.1 gi|433590675|ref|YP_007280171.1| - 0.089 13.1 0.0 0.13 12.5 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_36 PF13730.1 gi|433590675|ref|YP_007280171.1| - 0.1 12.7 0.0 0.15 12.1 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain MarR PF01047.17 gi|433590675|ref|YP_007280171.1| - 0.1 12.2 0.0 0.19 11.4 0.0 1.4 1 0 0 1 1 1 0 MarR family Permease PF02405.11 gi|433590676|ref|YP_007280172.1| - 0.034 13.6 1.2 0.039 13.4 0.6 1.3 1 1 0 1 1 1 0 Permease PetG PF02529.10 gi|433590676|ref|YP_007280172.1| - 0.063 12.8 1.1 1.7 8.1 0.2 2.5 2 0 0 2 2 2 0 Cytochrome B6-F complex subunit 5 DUF4271 PF14093.1 gi|433590676|ref|YP_007280172.1| - 0.093 12.4 2.7 0.11 12.1 1.9 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4271) DUF2976 PF11190.3 gi|433590676|ref|YP_007280172.1| - 0.2 11.2 2.0 0.29 10.6 0.3 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2976) DUF998 PF06197.8 gi|433590676|ref|YP_007280172.1| - 0.21 10.8 3.7 0.25 10.6 2.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF998) Usp PF00582.21 gi|433590677|ref|YP_007280173.1| - 8.1e-12 45.5 4.1 1.2e-11 44.9 2.8 1.2 1 0 0 1 1 1 1 Universal stress protein family Rubi_NSP_C PF12601.3 gi|433590677|ref|YP_007280173.1| - 0.44 10.4 3.9 3.4 7.6 0.1 2.4 2 0 0 2 2 2 0 Rubivirus non-structural protein HMA PF00403.21 gi|433590678|ref|YP_007280174.1| - 0.09 12.9 0.8 32 4.7 0.0 3.8 4 0 0 4 4 4 0 Heavy-metal-associated domain Glyoxalase_2 PF12681.2 gi|433590679|ref|YP_007280175.1| - 3.1e-24 85.6 5.8 6.8e-15 55.5 0.2 2.1 2 0 0 2 2 2 2 Glyoxalase-like domain Glyoxalase PF00903.20 gi|433590679|ref|YP_007280175.1| - 3.1e-21 75.6 4.8 8.2e-13 48.4 0.2 2.2 2 0 0 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.1 gi|433590679|ref|YP_007280175.1| - 2.6e-10 40.3 4.2 2.9e-05 24.0 0.2 4.0 2 2 1 3 3 3 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.1 gi|433590679|ref|YP_007280175.1| - 0.0092 15.9 2.7 7.8 6.3 0.2 3.8 2 2 1 3 3 3 2 Glyoxalase-like domain 2OG-FeII_Oxy_3 PF13640.1 gi|433590679|ref|YP_007280175.1| - 0.1 13.1 0.5 0.44 11.0 0.3 2.2 2 1 0 2 2 2 0 2OG-Fe(II) oxygenase superfamily Na_H_antiporter PF03553.9 gi|433590680|ref|YP_007280176.1| - 3.5e-61 206.8 32.5 4.1e-61 206.6 15.0 3.3 1 1 1 2 2 2 1 Na+/H+ antiporter family DUF2648 PF10855.3 gi|433590680|ref|YP_007280176.1| - 2.4 7.6 7.7 17 4.9 0.8 4.2 3 0 0 3 3 3 0 Protein of unknown function (DUF2648) MMR_HSR1 PF01926.18 gi|433590681|ref|YP_007280177.1| - 3.9e-19 68.7 0.0 6.2e-19 68.0 0.0 1.5 1 1 0 1 1 1 1 50S ribosome-binding GTPase TGS PF02824.16 gi|433590681|ref|YP_007280177.1| - 1.3e-13 50.5 0.0 2.2e-13 49.7 0.0 1.4 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.13 gi|433590681|ref|YP_007280177.1| - 2.5e-13 49.5 0.8 4.8e-11 42.1 0.0 2.2 2 0 0 2 2 2 2 Ferrous iron transport protein B Dynamin_N PF00350.18 gi|433590681|ref|YP_007280177.1| - 0.00054 19.8 0.4 0.37 10.5 0.1 2.6 1 1 1 2 2 2 2 Dynamin family Miro PF08477.8 gi|433590681|ref|YP_007280177.1| - 0.0016 18.9 0.5 0.0055 17.1 0.0 2.2 2 1 1 3 3 3 1 Miro-like protein ABC_tran PF00005.22 gi|433590681|ref|YP_007280177.1| - 0.0017 18.6 0.1 0.18 12.1 0.0 2.4 2 0 0 2 2 2 1 ABC transporter ArgK PF03308.11 gi|433590681|ref|YP_007280177.1| - 0.002 16.9 1.1 0.54 8.9 0.0 2.8 3 1 0 3 3 3 2 ArgK protein GTP_EFTU PF00009.22 gi|433590681|ref|YP_007280177.1| - 0.002 17.5 0.0 0.013 14.9 0.0 2.2 2 0 0 2 2 2 1 Elongation factor Tu GTP binding domain AIG1 PF04548.11 gi|433590681|ref|YP_007280177.1| - 0.003 16.7 0.0 0.0061 15.6 0.0 1.5 1 0 0 1 1 1 1 AIG1 family DUF258 PF03193.11 gi|433590681|ref|YP_007280177.1| - 0.0086 15.2 0.2 0.1 11.7 0.0 2.7 3 0 0 3 3 3 1 Protein of unknown function, DUF258 ThiS PF02597.15 gi|433590681|ref|YP_007280177.1| - 0.02 15.2 0.2 0.15 12.4 0.0 2.6 2 1 0 2 2 2 0 ThiS family Ras PF00071.17 gi|433590681|ref|YP_007280177.1| - 0.04 13.3 0.0 0.42 9.9 0.0 2.4 1 1 1 2 2 2 0 Ras family PduV-EutP PF10662.4 gi|433590681|ref|YP_007280177.1| - 0.12 11.8 0.0 1 8.8 0.0 2.2 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation SRPRB PF09439.5 gi|433590681|ref|YP_007280177.1| - 0.19 10.9 0.8 0.31 10.2 0.0 1.7 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit CARDB PF07705.6 gi|433590682|ref|YP_007280178.1| - 1.4e-08 34.6 5.2 0.0041 17.1 0.0 4.0 4 1 0 4 4 4 2 CARDB DUF4352 PF11611.3 gi|433590682|ref|YP_007280178.1| - 0.0026 17.8 0.0 2 8.5 0.0 2.8 2 0 0 2 2 2 2 Domain of unknown function (DUF4352) Big_3 PF07523.7 gi|433590682|ref|YP_007280178.1| - 0.023 14.7 2.2 2.7 8.1 0.0 4.0 3 0 0 3 3 3 0 Bacterial Ig-like domain (group 3) SWIRM PF04433.12 gi|433590683|ref|YP_007280179.1| - 0.086 12.9 0.0 0.098 12.7 0.0 1.1 1 0 0 1 1 1 0 SWIRM domain DUF1743 PF08489.6 gi|433590684|ref|YP_007280180.1| - 5.4e-37 126.1 0.0 9.3e-37 125.3 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1743) OrfB_Zn_ribbon PF07282.6 gi|433590684|ref|YP_007280180.1| - 0.035 13.7 2.2 0.094 12.3 1.5 1.7 1 0 0 1 1 1 0 Putative transposase DNA-binding domain C1_1 PF00130.17 gi|433590684|ref|YP_007280180.1| - 0.053 13.2 0.2 0.11 12.2 0.1 1.4 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zinc-ribbons_6 PF07191.7 gi|433590684|ref|YP_007280180.1| - 0.18 11.6 0.6 0.41 10.4 0.4 1.6 1 0 0 1 1 1 0 zinc-ribbons Zn_Tnp_IS1595 PF12760.2 gi|433590684|ref|YP_007280180.1| - 0.2 11.5 2.2 0.5 10.2 1.5 1.7 1 0 0 1 1 1 0 Transposase zinc-ribbon domain zf-C2H2 PF00096.21 gi|433590684|ref|YP_007280180.1| - 0.92 9.9 3.3 33 5.0 0.2 2.7 2 0 0 2 2 2 0 Zinc finger, C2H2 type HTH_3 PF01381.17 gi|433590685|ref|YP_007280181.1| - 2.9e-08 33.4 0.0 4.9e-08 32.6 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.1 gi|433590685|ref|YP_007280181.1| - 1.2e-06 28.6 0.1 3.6e-06 27.0 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.2 gi|433590685|ref|YP_007280181.1| - 3.3e-06 27.0 0.0 6.1e-06 26.1 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|433590685|ref|YP_007280181.1| - 0.00038 20.0 0.0 0.00079 19.0 0.0 1.5 1 0 0 1 1 1 1 HTH domain HTH_23 PF13384.1 gi|433590685|ref|YP_007280181.1| - 0.0013 18.3 0.0 0.0036 16.9 0.0 1.7 1 0 0 1 1 1 1 Homeodomain-like domain HTH_25 PF13413.1 gi|433590685|ref|YP_007280181.1| - 0.0038 16.8 0.0 0.009 15.6 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4 PF04545.11 gi|433590685|ref|YP_007280181.1| - 0.022 14.0 0.0 0.053 12.8 0.0 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_28 PF13518.1 gi|433590685|ref|YP_007280181.1| - 0.024 14.6 0.0 0.056 13.4 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_AraC PF00165.18 gi|433590685|ref|YP_007280181.1| - 0.038 13.8 0.0 0.072 12.9 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix proteins, AraC family HTH_10 PF04967.7 gi|433590685|ref|YP_007280181.1| - 0.088 12.4 0.0 0.16 11.5 0.0 1.4 1 0 0 1 1 1 0 HTH DNA binding domain MarR PF01047.17 gi|433590685|ref|YP_007280181.1| - 0.11 12.2 0.0 15 5.3 0.0 2.5 2 0 0 2 2 2 0 MarR family GST_N_3 PF13417.1 gi|433590686|ref|YP_007280182.1| - 7.2e-15 54.9 0.0 8.3e-15 54.7 0.0 1.0 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain Glutaredoxin PF00462.19 gi|433590686|ref|YP_007280182.1| - 1.7e-14 53.5 0.0 2.7e-14 52.8 0.0 1.4 1 1 0 1 1 1 1 Glutaredoxin GST_N_2 PF13409.1 gi|433590686|ref|YP_007280182.1| - 7.5e-11 41.8 0.0 8.6e-11 41.6 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain DUF836 PF05768.9 gi|433590686|ref|YP_007280182.1| - 0.0056 16.9 0.1 0.0056 16.9 0.0 1.3 1 1 0 1 1 1 1 Glutaredoxin-like domain (DUF836) GST_N PF02798.15 gi|433590686|ref|YP_007280182.1| - 0.0078 16.3 0.0 0.0095 16.0 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain Thioredoxin_2 PF13098.1 gi|433590686|ref|YP_007280182.1| - 0.0088 16.2 0.1 0.017 15.2 0.0 1.7 1 1 0 1 1 1 1 Thioredoxin-like domain Agenet PF05641.7 gi|433590686|ref|YP_007280182.1| - 0.072 13.2 0.0 0.13 12.4 0.0 1.5 2 0 0 2 2 2 0 Agenet domain Xan_ur_permease PF00860.15 gi|433590687|ref|YP_007280183.1| - 2.6e-37 128.2 40.4 5.5e-37 127.1 28.0 1.4 1 1 0 1 1 1 1 Permease family TrkA_N PF02254.13 gi|433590688|ref|YP_007280184.1| - 1.3e-25 89.6 0.4 2.1e-25 88.9 0.3 1.3 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.16 gi|433590688|ref|YP_007280184.1| - 1.3e-13 50.2 0.1 3e-13 49.1 0.1 1.6 1 0 0 1 1 1 1 TrkA-C domain UDPG_MGDP_dh_N PF03721.9 gi|433590688|ref|YP_007280184.1| - 4.3e-07 29.4 0.1 8e-07 28.6 0.1 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_7 PF13241.1 gi|433590688|ref|YP_007280184.1| - 3.8e-06 27.0 0.1 6.5e-06 26.3 0.0 1.5 1 0 0 1 1 1 1 Putative NAD(P)-binding DAO PF01266.19 gi|433590688|ref|YP_007280184.1| - 1.3e-05 24.2 0.0 1.7e-05 23.8 0.0 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase 3HCDH_N PF02737.13 gi|433590688|ref|YP_007280184.1| - 2.5e-05 24.0 0.1 3.8e-05 23.4 0.1 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_10 PF13460.1 gi|433590688|ref|YP_007280184.1| - 3.2e-05 24.0 0.3 4.6e-05 23.5 0.2 1.3 1 0 0 1 1 1 1 NADH(P)-binding ApbA PF02558.11 gi|433590688|ref|YP_007280184.1| - 5.1e-05 22.7 0.0 8.5e-05 22.0 0.0 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA XdhC_C PF13478.1 gi|433590688|ref|YP_007280184.1| - 0.00033 20.9 0.1 0.0015 18.8 0.0 1.9 2 0 0 2 2 2 1 XdhC Rossmann domain AlaDh_PNT_C PF01262.16 gi|433590688|ref|YP_007280184.1| - 0.00059 19.4 0.2 0.00079 19.0 0.1 1.4 1 1 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain 2-Hacid_dh_C PF02826.14 gi|433590688|ref|YP_007280184.1| - 0.00066 18.8 0.0 0.001 18.2 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.7 gi|433590688|ref|YP_007280184.1| - 0.001 18.4 0.1 0.0021 17.4 0.0 1.5 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain Saccharop_dh PF03435.13 gi|433590688|ref|YP_007280184.1| - 0.0018 17.3 0.2 0.0023 16.9 0.1 1.1 1 0 0 1 1 1 1 Saccharopine dehydrogenase F420_oxidored PF03807.12 gi|433590688|ref|YP_007280184.1| - 0.0022 18.3 0.0 0.0048 17.2 0.0 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.10 gi|433590688|ref|YP_007280184.1| - 0.0028 17.5 0.2 0.0051 16.6 0.0 1.6 2 0 0 2 2 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NmrA PF05368.8 gi|433590688|ref|YP_007280184.1| - 0.0064 15.7 0.1 0.0094 15.2 0.0 1.2 1 0 0 1 1 1 1 NmrA-like family FAD_binding_3 PF01494.14 gi|433590688|ref|YP_007280184.1| - 0.011 14.7 0.0 0.019 14.0 0.0 1.4 1 0 0 1 1 1 0 FAD binding domain ThiF PF00899.16 gi|433590688|ref|YP_007280184.1| - 0.013 15.3 0.2 0.051 13.3 0.0 1.9 2 0 0 2 2 2 0 ThiF family NAD_Gly3P_dh_N PF01210.18 gi|433590688|ref|YP_007280184.1| - 0.029 14.0 0.0 0.05 13.3 0.0 1.4 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus GFO_IDH_MocA PF01408.17 gi|433590688|ref|YP_007280184.1| - 0.032 14.7 0.0 0.049 14.1 0.0 1.3 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold adh_short PF00106.20 gi|433590688|ref|YP_007280184.1| - 0.035 14.0 0.3 0.062 13.2 0.2 1.4 1 0 0 1 1 1 0 short chain dehydrogenase Pyr_redox PF00070.22 gi|433590688|ref|YP_007280184.1| - 0.04 14.3 0.2 0.093 13.1 0.2 1.6 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase ELFV_dehydrog PF00208.16 gi|433590688|ref|YP_007280184.1| - 0.049 13.1 0.0 0.08 12.5 0.0 1.3 1 0 0 1 1 1 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AdoHcyase_NAD PF00670.16 gi|433590688|ref|YP_007280184.1| - 0.053 13.3 0.1 0.071 12.9 0.1 1.3 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Gp_dh_N PF00044.19 gi|433590688|ref|YP_007280184.1| - 0.086 12.8 0.1 0.17 11.8 0.0 1.5 2 0 0 2 2 2 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain N6_N4_Mtase PF01555.13 gi|433590689|ref|YP_007280185.1| - 6.9e-13 48.6 0.0 8.4e-08 31.9 0.0 2.2 2 0 0 2 2 2 2 DNA methylase Methyltransf_26 PF13659.1 gi|433590689|ref|YP_007280185.1| - 4e-10 39.7 0.0 6.1e-10 39.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|433590689|ref|YP_007280185.1| - 0.028 13.9 0.0 0.066 12.7 0.0 1.5 1 1 0 1 1 1 0 Putative RNA methylase family UPF0020 Na_Ca_ex PF01699.19 gi|433590690|ref|YP_007280186.1| - 8.3e-46 155.0 32.8 3.1e-24 85.1 9.0 2.1 2 0 0 2 2 2 2 Sodium/calcium exchanger protein GST_N_2 PF13409.1 gi|433590691|ref|YP_007280187.1| - 1e-21 76.7 0.0 1.9e-21 75.8 0.0 1.5 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_C_2 PF13410.1 gi|433590691|ref|YP_007280187.1| - 1.3e-12 47.4 0.2 3e-12 46.2 0.1 1.7 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_C_3 PF14497.1 gi|433590691|ref|YP_007280187.1| - 1.7e-08 34.8 0.0 3.2e-08 33.9 0.0 1.5 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_C PF00043.20 gi|433590691|ref|YP_007280187.1| - 3.6e-07 30.0 0.1 7.5e-07 29.0 0.0 1.5 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_N_3 PF13417.1 gi|433590691|ref|YP_007280187.1| - 4e-07 30.1 0.0 9e-06 25.8 0.0 2.3 1 1 0 1 1 1 1 Glutathione S-transferase, N-terminal domain HemY_N PF07219.8 gi|433590692|ref|YP_007280188.1| - 0.00012 21.5 0.0 0.00015 21.2 0.0 1.2 1 0 0 1 1 1 1 HemY protein N-terminus Epimerase PF01370.16 gi|433590693|ref|YP_007280189.1| - 3.5e-15 56.0 0.0 5.2e-15 55.5 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.1 gi|433590693|ref|YP_007280189.1| - 2.1e-10 40.8 0.1 3.8e-10 40.0 0.1 1.5 1 1 0 1 1 1 1 NADH(P)-binding NAD_binding_4 PF07993.7 gi|433590693|ref|YP_007280189.1| - 4e-09 35.7 0.0 9.1e-09 34.5 0.0 1.5 1 1 1 2 2 2 1 Male sterility protein RmlD_sub_bind PF04321.12 gi|433590693|ref|YP_007280189.1| - 2.6e-07 29.8 0.2 7.6e-07 28.3 0.1 1.7 1 1 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.10 gi|433590693|ref|YP_007280189.1| - 6.9e-07 28.4 0.1 2.5e-05 23.3 0.1 2.4 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein 3Beta_HSD PF01073.14 gi|433590693|ref|YP_007280189.1| - 1.4e-06 27.2 0.0 2.1e-06 26.6 0.0 1.3 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family adh_short PF00106.20 gi|433590693|ref|YP_007280189.1| - 0.00017 21.5 0.9 0.0038 17.1 0.3 2.6 2 1 0 2 2 2 1 short chain dehydrogenase KR PF08659.5 gi|433590693|ref|YP_007280189.1| - 0.0017 18.0 0.0 1.5 8.4 0.0 2.3 1 1 1 2 2 2 2 KR domain DapB_N PF01113.15 gi|433590693|ref|YP_007280189.1| - 0.0041 17.0 0.0 0.0078 16.1 0.0 1.5 1 1 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus ADH_zinc_N PF00107.21 gi|433590694|ref|YP_007280190.1| - 1.9e-24 85.6 0.5 3.3e-24 84.8 0.4 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.7 gi|433590694|ref|YP_007280190.1| - 1.4e-22 79.5 1.6 2.8e-22 78.5 0.3 2.1 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N_2 PF13602.1 gi|433590694|ref|YP_007280190.1| - 1.3e-14 55.1 0.8 3.3e-14 53.8 0.1 1.9 1 1 1 2 2 2 1 Zinc-binding dehydrogenase NADH_4Fe-4S PF10589.4 gi|433590694|ref|YP_007280190.1| - 0.6 9.3 6.4 1.8 7.7 4.5 1.8 1 0 0 1 1 1 0 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Fer2 PF00111.22 gi|433590695|ref|YP_007280191.1| - 3.6e-11 42.6 0.2 5.5e-11 42.0 0.2 1.4 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain DUF393 PF04134.7 gi|433590696|ref|YP_007280192.1| - 0.00012 23.1 0.1 0.00018 22.5 0.0 1.5 1 1 0 1 1 1 1 Protein of unknown function, DUF393 Copper-bind PF00127.15 gi|433590697|ref|YP_007280193.1| - 3.9e-06 27.0 0.0 8.2e-06 25.9 0.0 1.5 1 0 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family ChW PF07538.6 gi|433590697|ref|YP_007280193.1| - 0.088 12.3 0.1 0.21 11.1 0.1 1.6 1 0 0 1 1 1 0 Clostridial hydrophobic W TAT_signal PF10518.4 gi|433590697|ref|YP_007280193.1| - 1.4 9.1 4.2 3.3 7.9 2.9 1.7 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Dyp_perox PF04261.7 gi|433590698|ref|YP_007280194.1| - 3.2e-08 32.6 0.0 1.1e-07 30.9 0.0 1.8 1 1 0 1 1 1 1 Dyp-type peroxidase family Ferritin PF00210.19 gi|433590699|ref|YP_007280195.1| - 9.9e-15 54.5 0.0 1.3e-14 54.1 0.0 1.1 1 0 0 1 1 1 1 Ferritin-like domain Rubrerythrin PF02915.12 gi|433590699|ref|YP_007280195.1| - 0.013 15.7 0.2 0.041 14.2 0.1 1.9 2 1 0 2 2 2 0 Rubrerythrin Polyketide_cyc2 PF10604.4 gi|433590700|ref|YP_007280196.1| - 8e-14 51.9 1.6 9.7e-14 51.7 1.1 1.0 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport AHSA1 PF08327.6 gi|433590700|ref|YP_007280196.1| - 9.8e-06 25.6 0.0 1.2e-05 25.4 0.0 1.1 1 0 0 1 1 1 1 Activator of Hsp90 ATPase homolog 1-like protein Polyketide_cyc PF03364.15 gi|433590700|ref|YP_007280196.1| - 0.023 14.6 0.4 0.025 14.5 0.3 1.5 1 1 0 1 1 1 0 Polyketide cyclase / dehydrase and lipid transport MutS_V PF00488.16 gi|433590702|ref|YP_007280198.1| - 1.9e-10 40.5 0.0 3.4e-10 39.7 0.0 1.4 1 0 0 1 1 1 1 MutS domain V AAA_10 PF12846.2 gi|433590702|ref|YP_007280198.1| - 0.0033 16.9 4.6 0.018 14.4 0.0 3.2 2 2 0 3 3 3 1 AAA-like domain AAA_21 PF13304.1 gi|433590702|ref|YP_007280198.1| - 0.018 15.0 0.0 0.038 13.9 0.0 1.5 2 0 0 2 2 2 0 AAA domain Apolipoprotein PF01442.13 gi|433590702|ref|YP_007280198.1| - 0.019 14.4 2.1 18 4.7 0.1 2.1 1 1 0 1 1 1 0 Apolipoprotein A1/A4/E domain AAA_14 PF13173.1 gi|433590702|ref|YP_007280198.1| - 0.029 14.2 0.0 0.059 13.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain RelB_N PF12910.2 gi|433590702|ref|YP_007280198.1| - 0.032 13.5 0.1 0.1 12.0 0.1 1.9 1 0 0 1 1 1 0 Antitoxin of toxin-antitoxin stability system N-terminal IMS_HHH PF11798.3 gi|433590702|ref|YP_007280198.1| - 0.16 12.1 0.0 0.39 10.8 0.0 1.7 1 0 0 1 1 1 0 IMS family HHH motif EntA_Immun PF08951.5 gi|433590702|ref|YP_007280198.1| - 0.31 11.2 0.7 2.6 8.2 0.1 2.5 3 0 0 3 3 2 0 Enterocin A Immunity DUF4404 PF14357.1 gi|433590702|ref|YP_007280198.1| - 0.35 11.2 2.3 21 5.6 0.2 2.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4404) DUF1205 PF06722.7 gi|433590702|ref|YP_007280198.1| - 1.8 8.8 5.3 14 5.9 0.3 3.5 3 0 0 3 3 3 0 Protein of unknown function (DUF1205) HHH_5 PF14520.1 gi|433590702|ref|YP_007280198.1| - 2.9 8.1 11.0 8.8 6.5 0.2 3.8 3 2 0 3 3 3 0 Helix-hairpin-helix domain FAD-oxidase_C PF02913.14 gi|433590703|ref|YP_007280199.1| - 6.6e-59 199.2 0.1 1.4e-58 198.2 0.1 1.6 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.18 gi|433590703|ref|YP_007280199.1| - 4.7e-43 146.0 0.8 1e-42 144.8 0.5 1.7 1 0 0 1 1 1 1 FAD binding domain CCG PF02754.11 gi|433590703|ref|YP_007280199.1| - 5.1e-09 36.0 0.0 1.1e-05 25.2 0.0 2.7 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_17 PF13534.1 gi|433590703|ref|YP_007280199.1| - 6e-09 36.1 2.9 1.3e-08 35.0 2.0 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|433590703|ref|YP_007280199.1| - 5.1e-08 32.8 4.3 1e-07 31.8 3.0 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|433590703|ref|YP_007280199.1| - 0.00016 21.9 1.9 0.0031 17.7 0.1 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|433590703|ref|YP_007280199.1| - 0.00064 20.1 3.9 0.00092 19.5 0.2 2.6 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|433590703|ref|YP_007280199.1| - 0.0015 18.2 2.5 0.03 14.1 0.2 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Cytokin-bind PF09265.5 gi|433590703|ref|YP_007280199.1| - 0.044 12.9 0.1 0.072 12.2 0.1 1.2 1 0 0 1 1 1 0 Cytokinin dehydrogenase 1, FAD and cytokinin binding BRCT PF00533.21 gi|433590703|ref|YP_007280199.1| - 0.19 11.8 0.0 0.82 9.8 0.0 2.0 2 0 0 2 2 2 0 BRCA1 C Terminus (BRCT) domain Fer4_15 PF13459.1 gi|433590703|ref|YP_007280199.1| - 0.2 12.2 4.2 1 9.9 0.2 3.7 3 0 0 3 3 3 0 4Fe-4S single cluster domain Fer4_7 PF12838.2 gi|433590703|ref|YP_007280199.1| - 0.73 10.2 8.2 1.9 8.9 1.4 2.5 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4 PF00037.22 gi|433590703|ref|YP_007280199.1| - 1.8 8.2 14.4 0.33 10.6 2.4 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_21 PF14697.1 gi|433590703|ref|YP_007280199.1| - 2 8.3 8.7 0.27 11.1 0.2 2.7 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|433590703|ref|YP_007280199.1| - 8.7 6.4 10.1 1.9 8.5 1.3 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain GATase_6 PF13522.1 gi|433590704|ref|YP_007280200.1| - 9e-23 80.6 0.0 2.1e-22 79.5 0.0 1.6 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.1 gi|433590704|ref|YP_007280200.1| - 6.1e-21 74.4 0.0 1.4e-20 73.3 0.0 1.6 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|433590704|ref|YP_007280200.1| - 4.1e-20 71.8 0.0 4.3e-14 52.0 0.0 3.2 1 1 1 2 2 2 2 Glutamine amidotransferases class-II Pribosyltran PF00156.22 gi|433590704|ref|YP_007280200.1| - 5.2e-11 42.3 0.2 1.4e-10 40.9 0.1 1.7 1 1 0 1 1 1 1 Phosphoribosyl transferase domain GATase_4 PF13230.1 gi|433590704|ref|YP_007280200.1| - 0.0013 17.4 0.0 0.0022 16.7 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferases class-II Tautomerase PF01361.16 gi|433590706|ref|YP_007280202.1| - 1.4e-08 34.2 0.0 0.00027 20.4 0.0 2.2 2 0 0 2 2 2 2 Tautomerase enzyme Tautomerase_2 PF14552.1 gi|433590706|ref|YP_007280202.1| - 0.00025 21.0 0.0 0.27 11.2 0.0 2.1 1 1 1 2 2 2 2 Tautomerase enzyme Tautomerase_3 PF14832.1 gi|433590706|ref|YP_007280202.1| - 0.016 15.2 0.0 0.055 13.4 0.0 1.8 2 0 0 2 2 2 0 Putative oxalocrotonate tautomerase enzyme ArsA_ATPase PF02374.10 gi|433590707|ref|YP_007280203.1| - 1.4e-78 263.9 0.0 1.2e-50 172.2 0.0 2.3 2 1 0 2 2 2 2 Anion-transporting ATPase CbiA PF01656.18 gi|433590707|ref|YP_007280203.1| - 4.6e-09 35.9 0.0 2e-08 33.9 0.0 1.9 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|433590707|ref|YP_007280203.1| - 0.00015 21.7 0.1 0.004 17.0 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|433590707|ref|YP_007280203.1| - 0.00029 20.2 0.6 0.013 14.9 0.0 2.6 2 0 0 2 2 2 1 AAA domain PhoH PF02562.11 gi|433590707|ref|YP_007280203.1| - 0.027 13.6 0.0 0.055 12.6 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein YhjQ PF06564.7 gi|433590707|ref|YP_007280203.1| - 0.032 13.5 0.0 0.06 12.6 0.0 1.4 1 0 0 1 1 1 0 YhjQ protein AAA_10 PF12846.2 gi|433590707|ref|YP_007280203.1| - 0.091 12.1 0.1 0.21 10.9 0.1 1.6 1 1 0 1 1 1 0 AAA-like domain Big_3_4 PF13754.1 gi|433590707|ref|YP_007280203.1| - 0.1 12.9 0.1 0.1 12.9 0.1 1.8 2 0 0 2 2 1 0 Bacterial Ig-like domain (group 3) Zeta_toxin PF06414.7 gi|433590707|ref|YP_007280203.1| - 0.13 11.3 0.2 0.31 10.0 0.0 1.7 2 0 0 2 2 2 0 Zeta toxin RuvB_N PF05496.7 gi|433590707|ref|YP_007280203.1| - 0.13 11.2 0.0 0.21 10.5 0.0 1.3 1 0 0 1 1 1 0 Holliday junction DNA helicase ruvB N-terminus IstB_IS21 PF01695.12 gi|433590707|ref|YP_007280203.1| - 0.15 11.4 0.0 0.25 10.7 0.0 1.2 1 0 0 1 1 1 0 IstB-like ATP binding protein SRP54 PF00448.17 gi|433590707|ref|YP_007280203.1| - 0.16 11.4 0.2 0.62 9.4 0.1 1.8 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain Synaphin PF05835.7 gi|433590707|ref|YP_007280203.1| - 0.23 11.6 0.8 0.34 11.0 0.0 1.7 2 0 0 2 2 2 0 Synaphin protein Glyco_tranf_2_3 PF13641.1 gi|433590708|ref|YP_007280204.1| - 3.4e-22 79.3 6.3 2.1e-21 76.7 4.4 2.1 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|433590708|ref|YP_007280204.1| - 4.6e-17 62.3 1.5 8e-17 61.5 1.1 1.5 1 1 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.1 gi|433590708|ref|YP_007280204.1| - 1.7e-08 33.9 0.2 3.1e-08 33.1 0.1 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glycos_transf_2 PF00535.21 gi|433590708|ref|YP_007280204.1| - 0.0028 17.3 1.7 1.8 8.1 0.1 2.6 3 0 0 3 3 3 2 Glycosyl transferase family 2 Cas_NE0113 PF09623.5 gi|433590708|ref|YP_007280204.1| - 0.041 13.3 0.1 0.059 12.8 0.1 1.2 1 0 0 1 1 1 0 CRISPR-associated protein NE0113 (Cas_NE0113) Aminotran_1_2 PF00155.16 gi|433590709|ref|YP_007280205.1| - 2e-53 181.6 0.0 2.4e-53 181.3 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|433590709|ref|YP_007280205.1| - 1.8e-08 33.8 0.0 4e-08 32.7 0.0 1.4 2 0 0 2 2 2 1 Beta-eliminating lyase Aminotran_5 PF00266.14 gi|433590709|ref|YP_007280205.1| - 3.7e-08 32.5 0.0 7.7e-08 31.4 0.0 1.4 1 1 0 1 1 1 1 Aminotransferase class-V Aminotran_MocR PF12897.2 gi|433590709|ref|YP_007280205.1| - 2.3e-05 23.1 0.4 4.6e-05 22.1 0.3 1.6 1 1 0 1 1 1 1 Alanine-glyoxylate amino-transferase Cys_Met_Meta_PP PF01053.15 gi|433590709|ref|YP_007280205.1| - 5.7e-05 21.5 0.0 8.6e-05 20.9 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.12 gi|433590709|ref|YP_007280205.1| - 6.8e-05 22.0 0.4 0.00013 21.1 0.2 1.4 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Alliinase_C PF04864.8 gi|433590709|ref|YP_007280205.1| - 0.00019 20.2 0.0 0.00026 19.7 0.0 1.2 1 0 0 1 1 1 1 Allinase HRDC PF00570.18 gi|433590709|ref|YP_007280205.1| - 0.012 15.3 0.1 5.6 6.7 0.0 3.4 3 0 0 3 3 3 0 HRDC domain Aminotran_3 PF00202.16 gi|433590709|ref|YP_007280205.1| - 0.016 14.0 0.0 0.026 13.3 0.0 1.3 1 0 0 1 1 1 0 Aminotransferase class-III CinA PF02464.12 gi|433590710|ref|YP_007280206.1| - 2.8e-57 192.5 0.1 3.1e-57 192.3 0.0 1.0 1 0 0 1 1 1 1 Competence-damaged protein Bacteriocin_IIc PF10439.4 gi|433590710|ref|YP_007280206.1| - 1.4 9.1 5.0 1.7 8.7 0.0 2.2 2 0 0 2 2 2 0 Bacteriocin class II with double-glycine leader peptide DUF457 PF04307.9 gi|433590711|ref|YP_007280207.1| - 1.1e-17 63.8 4.5 1.4e-17 63.4 3.1 1.1 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) Multi_Drug_Res PF00893.14 gi|433590712|ref|YP_007280208.1| - 3.2e-26 91.6 4.9 4.1e-26 91.2 3.4 1.2 1 0 0 1 1 1 1 Small Multidrug Resistance protein CD20 PF04103.10 gi|433590712|ref|YP_007280208.1| - 0.012 15.4 4.0 0.017 15.0 2.8 1.1 1 0 0 1 1 1 0 CD20-like family EamA PF00892.15 gi|433590712|ref|YP_007280208.1| - 0.059 13.4 7.3 0.086 12.8 5.1 1.4 1 1 0 1 1 1 0 EamA-like transporter family Bax1-I PF01027.15 gi|433590712|ref|YP_007280208.1| - 1.5 8.3 7.6 2.1 7.8 5.3 1.2 1 0 0 1 1 1 0 Inhibitor of apoptosis-promoting Bax1 EmrE PF13536.1 gi|433590712|ref|YP_007280208.1| - 2.4 8.3 9.0 3.4 7.8 6.2 1.4 1 1 0 1 1 1 0 Multidrug resistance efflux transporter DUF3995 PF13160.1 gi|433590712|ref|YP_007280208.1| - 2.7 8.0 8.4 2.1 8.4 4.0 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3995) DUF914 PF06027.7 gi|433590713|ref|YP_007280209.1| - 0.09 11.6 0.8 0.14 10.9 0.3 1.4 1 1 0 1 1 1 0 Eukaryotic protein of unknown function (DUF914) TfoX_N PF04993.8 gi|433590713|ref|YP_007280209.1| - 0.11 12.3 0.2 20 5.0 0.0 2.3 2 0 0 2 2 2 0 TfoX N-terminal domain Abi PF02517.11 gi|433590715|ref|YP_007280211.1| - 1.7e-06 28.0 3.1 3.3e-06 27.1 0.1 2.2 1 1 0 2 2 2 1 CAAX protease self-immunity UPF0118 PF01594.11 gi|433590716|ref|YP_007280212.1| - 1.8e-46 158.6 25.7 2.2e-46 158.3 17.8 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF20 Na_H_antiporter PF03553.9 gi|433590717|ref|YP_007280213.1| - 7.6e-60 202.4 37.3 1.1e-58 198.7 10.2 2.1 1 1 1 2 2 2 2 Na+/H+ antiporter family DUF3989 PF13150.1 gi|433590717|ref|YP_007280213.1| - 0.2 11.0 0.3 17 4.9 0.0 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3989) DUF650 PF04894.7 gi|433590719|ref|YP_007280215.1| - 4.5e-95 318.2 0.0 5.5e-95 317.9 0.0 1.1 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF650) DUF651 PF04895.7 gi|433590719|ref|YP_007280215.1| - 1.8e-37 127.3 0.1 3.5e-37 126.3 0.1 1.5 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF651) DUF1610 PF07754.6 gi|433590721|ref|YP_007280217.1| - 3.4e-10 39.8 15.4 5.6e-05 23.1 2.2 2.1 2 0 0 2 2 2 2 Domain of unknown function (DUF1610) DZR PF12773.2 gi|433590721|ref|YP_007280217.1| - 0.0055 16.4 12.4 0.68 9.7 8.6 2.3 1 1 0 1 1 1 1 Double zinc ribbon zf-Mss51 PF13824.1 gi|433590721|ref|YP_007280217.1| - 0.0058 16.4 11.4 0.73 9.7 1.7 2.8 1 1 1 2 2 2 2 Zinc-finger of mitochondrial splicing suppressor 51 C1_3 PF07649.7 gi|433590721|ref|YP_007280217.1| - 0.0075 16.2 10.9 1.2 9.2 0.5 2.6 1 1 1 2 2 2 2 C1-like domain PolC_DP2 PF03833.8 gi|433590721|ref|YP_007280217.1| - 0.0078 13.9 6.3 0.0083 13.8 4.4 1.0 1 0 0 1 1 1 1 DNA polymerase II large subunit DP2 Zn_Tnp_IS91 PF14319.1 gi|433590721|ref|YP_007280217.1| - 0.01 15.3 6.9 0.012 15.1 4.8 1.1 1 0 0 1 1 1 0 Transposase zinc-binding domain DUF2039 PF10217.4 gi|433590721|ref|YP_007280217.1| - 0.012 15.6 5.3 0.017 15.1 3.7 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2039) C1_1 PF00130.17 gi|433590721|ref|YP_007280217.1| - 0.027 14.1 9.0 0.03 14.0 0.3 2.3 1 1 1 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) DUF2387 PF09526.5 gi|433590721|ref|YP_007280217.1| - 0.037 13.9 12.1 0.078 12.9 0.1 2.4 1 1 1 2 2 2 0 Probable metal-binding protein (DUF2387) OrfB_Zn_ribbon PF07282.6 gi|433590721|ref|YP_007280217.1| - 0.042 13.5 10.4 0.053 13.1 4.1 2.2 1 1 1 2 2 2 0 Putative transposase DNA-binding domain zf-UBP PF02148.14 gi|433590721|ref|YP_007280217.1| - 0.12 12.5 1.2 0.12 12.5 0.8 2.3 2 1 0 2 2 2 0 Zn-finger in ubiquitin-hydrolases and other protein DNA_RNApol_7kD PF03604.8 gi|433590721|ref|YP_007280217.1| - 0.14 11.6 11.3 2.6 7.6 0.7 3.5 2 2 1 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit Zn-ribbon_8 PF09723.5 gi|433590721|ref|YP_007280217.1| - 0.15 12.0 18.2 2.5 8.1 0.5 3.8 2 1 1 3 3 3 0 Zinc ribbon domain zf-MYND PF01753.13 gi|433590721|ref|YP_007280217.1| - 0.21 11.5 7.8 3.9 7.4 5.4 2.2 1 1 0 1 1 1 0 MYND finger BaffR-Tall_bind PF09256.5 gi|433590721|ref|YP_007280217.1| - 0.27 10.8 0.2 0.27 10.8 0.1 2.3 3 0 0 3 3 2 0 BAFF-R, TALL-1 binding Prok-RING_1 PF14446.1 gi|433590721|ref|YP_007280217.1| - 0.28 10.9 10.6 0.31 10.8 0.7 2.3 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 NMDAR2_C PF10565.4 gi|433590721|ref|YP_007280217.1| - 0.33 9.5 7.6 0.35 9.4 5.3 1.0 1 0 0 1 1 1 0 N-methyl D-aspartate receptor 2B3 C-terminus NMD3 PF04981.8 gi|433590721|ref|YP_007280217.1| - 0.34 9.9 8.4 0.39 9.8 5.8 1.0 1 0 0 1 1 1 0 NMD3 family zf-C2H2 PF00096.21 gi|433590721|ref|YP_007280217.1| - 0.39 11.1 17.1 3 8.3 0.3 3.9 4 0 0 4 4 4 0 Zinc finger, C2H2 type zf-RING_5 PF14634.1 gi|433590721|ref|YP_007280217.1| - 0.44 10.3 10.2 2.4 7.9 0.7 2.2 2 0 0 2 2 2 0 zinc-RING finger domain zinc_ribbon_2 PF13240.1 gi|433590721|ref|YP_007280217.1| - 0.47 10.0 14.0 0.58 9.7 0.4 3.8 4 0 0 4 4 4 0 zinc-ribbon domain FYVE_2 PF02318.11 gi|433590721|ref|YP_007280217.1| - 0.57 10.0 5.6 0.66 9.8 3.9 1.1 1 0 0 1 1 1 0 FYVE-type zinc finger PhnA_Zn_Ribbon PF08274.7 gi|433590721|ref|YP_007280217.1| - 0.73 9.6 0.0 0.73 9.6 0.0 3.2 3 1 1 4 4 3 0 PhnA Zinc-Ribbon zf-C2H2_6 PF13912.1 gi|433590721|ref|YP_007280217.1| - 0.76 9.7 9.7 20 5.2 0.6 3.3 3 0 0 3 3 3 0 C2H2-type zinc finger zinc-ribbons_6 PF07191.7 gi|433590721|ref|YP_007280217.1| - 0.94 9.3 10.5 9.6 6.0 3.7 2.2 1 1 1 2 2 2 0 zinc-ribbons DUF2296 PF10058.4 gi|433590721|ref|YP_007280217.1| - 0.99 9.2 11.7 7.3 6.4 0.7 3.5 1 1 3 4 4 4 0 Predicted integral membrane metal-binding protein (DUF2296) zf-UBR PF02207.15 gi|433590721|ref|YP_007280217.1| - 1 9.1 11.7 6.4 6.5 6.5 2.5 1 1 1 2 2 2 0 Putative zinc finger in N-recognin (UBR box) zf-ribbon_3 PF13248.1 gi|433590721|ref|YP_007280217.1| - 1.1 8.4 16.0 0.48 9.6 2.7 3.4 1 1 1 3 3 3 0 zinc-ribbon domain C1_2 PF03107.11 gi|433590721|ref|YP_007280217.1| - 1.1 9.3 8.5 26 5.0 1.9 3.1 1 1 1 2 2 2 0 C1 domain Zn_Tnp_IS1595 PF12760.2 gi|433590721|ref|YP_007280217.1| - 1.2 9.0 19.9 1.7e+02 2.0 13.8 3.6 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zf-C2HC5 PF06221.8 gi|433590721|ref|YP_007280217.1| - 1.2 8.9 10.9 0.75 9.5 4.1 2.1 1 1 1 2 2 2 0 Putative zinc finger motif, C2HC5-type RNHCP PF12647.2 gi|433590721|ref|YP_007280217.1| - 1.2 8.9 9.6 3 7.7 3.9 2.2 1 1 1 2 2 2 0 RNHCP domain Sgf11 PF08209.6 gi|433590721|ref|YP_007280217.1| - 1.3 8.4 15.5 1.8 7.9 0.8 3.9 2 1 2 4 4 4 0 Sgf11 (transcriptional regulation protein) zf-HIT PF04438.11 gi|433590721|ref|YP_007280217.1| - 1.4 8.6 16.5 6.8 6.4 1.7 3.5 1 1 2 3 3 3 0 HIT zinc finger IBR PF01485.16 gi|433590721|ref|YP_007280217.1| - 1.5 8.7 10.7 10 6.0 7.4 2.1 1 1 0 1 1 1 0 IBR domain C1_4 PF07975.7 gi|433590721|ref|YP_007280217.1| - 1.7 8.6 11.3 55 3.8 7.9 2.6 1 1 0 1 1 1 0 TFIIH C1-like domain HypA PF01155.14 gi|433590721|ref|YP_007280217.1| - 1.9 8.2 10.6 0.33 10.6 0.6 2.1 1 1 1 2 2 2 0 Hydrogenase expression/synthesis hypA family YhfH PF14149.1 gi|433590721|ref|YP_007280217.1| - 2.1 8.2 14.6 15 5.4 0.0 3.5 1 1 2 3 3 3 0 YhfH-like protein zinc_ribbon_4 PF13717.1 gi|433590721|ref|YP_007280217.1| - 2.1 8.0 0.1 2.1 8.0 0.0 3.5 3 1 1 4 4 3 0 zinc-ribbon domain Ribosomal_L37ae PF01780.14 gi|433590721|ref|YP_007280217.1| - 2.7 7.8 7.8 28 4.6 5.4 2.7 1 1 0 1 1 1 0 Ribosomal L37ae protein family DNA_ligase_ZBD PF03119.11 gi|433590721|ref|YP_007280217.1| - 3.4 7.4 8.0 2.5 7.8 0.3 2.6 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain DUF1272 PF06906.6 gi|433590721|ref|YP_007280217.1| - 3.5 7.5 11.3 37 4.2 7.8 2.3 1 1 0 1 1 1 0 Protein of unknown function (DUF1272) UPF0547 PF10571.4 gi|433590721|ref|YP_007280217.1| - 3.9 7.2 14.6 4.5 7.0 7.3 3.1 2 1 0 2 2 2 0 Uncharacterised protein family UPF0547 zinc_ribbon_5 PF13719.1 gi|433590721|ref|YP_007280217.1| - 4 7.1 13.2 2.4 7.8 0.0 3.5 3 1 1 4 4 4 0 zinc-ribbon domain FYVE PF01363.16 gi|433590721|ref|YP_007280217.1| - 4.4 7.2 9.1 10 6.0 6.3 1.7 1 1 0 1 1 1 0 FYVE zinc finger zf-AN1 PF01428.11 gi|433590721|ref|YP_007280217.1| - 4.7 7.1 12.5 9.9 6.1 2.1 2.8 2 1 1 3 3 3 0 AN1-like Zinc finger Tnp_zf-ribbon_2 PF13842.1 gi|433590721|ref|YP_007280217.1| - 4.8 7.6 11.6 1.4e+02 3.0 3.5 2.8 1 1 1 2 2 2 0 DDE_Tnp_1-like zinc-ribbon zf-dskA_traR PF01258.12 gi|433590721|ref|YP_007280217.1| - 5.5 6.8 16.2 6.4 6.6 4.0 3.5 2 1 0 3 3 3 0 Prokaryotic dksA/traR C4-type zinc finger A2L_zn_ribbon PF08792.5 gi|433590721|ref|YP_007280217.1| - 5.7 6.5 15.2 10 5.7 3.0 3.9 1 1 2 3 3 3 0 A2L zinc ribbon domain TerY-C PF15616.1 gi|433590721|ref|YP_007280217.1| - 6.1 6.7 10.5 31 4.5 7.3 2.0 1 1 0 1 1 1 0 TerY-C metal binding domain TF_Zn_Ribbon PF08271.7 gi|433590721|ref|YP_007280217.1| - 6.6 6.1 16.1 3 7.2 0.3 3.6 2 1 1 3 3 3 0 TFIIB zinc-binding TFIIS_C PF01096.13 gi|433590721|ref|YP_007280217.1| - 7.4 6.3 16.5 12 5.5 0.6 4.0 2 1 2 4 4 4 0 Transcription factor S-II (TFIIS) Ribosomal_L32p PF01783.18 gi|433590721|ref|YP_007280217.1| - 7.6 6.8 6.1 4.9e+02 1.0 4.3 2.7 1 1 0 1 1 1 0 Ribosomal L32p protein family zf-H2C2_2 PF13465.1 gi|433590721|ref|YP_007280217.1| - 8.3 6.9 18.8 3.5 8.0 0.7 3.4 2 1 2 4 4 3 0 Zinc-finger double domain zf-C3HC4 PF00097.20 gi|433590721|ref|YP_007280217.1| - 9.2 6.0 11.1 2.7 7.7 0.6 2.4 2 0 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) EF1_GNE PF00736.14 gi|433590722|ref|YP_007280218.1| - 2.3e-22 78.4 0.1 2.5e-22 78.3 0.1 1.0 1 0 0 1 1 1 1 EF-1 guanine nucleotide exchange domain Lactamase_B PF00753.22 gi|433590724|ref|YP_007280220.1| - 1e-21 77.4 7.2 1.3e-21 77.1 5.0 1.1 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|433590724|ref|YP_007280220.1| - 8.2e-05 22.2 0.0 0.00013 21.5 0.0 1.3 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Usg PF06233.7 gi|433590725|ref|YP_007280221.1| - 0.14 12.0 0.0 2.4 8.0 0.0 2.3 2 0 0 2 2 2 0 Usg-like family Cys_Met_Meta_PP PF01053.15 gi|433590726|ref|YP_007280222.1| - 8.1e-156 518.1 0.0 9.2e-156 517.9 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.14 gi|433590726|ref|YP_007280222.1| - 5.4e-06 25.3 0.0 8.5e-06 24.7 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Met_gamma_lyase PF06838.6 gi|433590726|ref|YP_007280222.1| - 0.0008 17.8 0.0 0.0012 17.2 0.0 1.2 1 0 0 1 1 1 1 Methionine gamma-lyase DegT_DnrJ_EryC1 PF01041.12 gi|433590726|ref|YP_007280222.1| - 0.0017 17.4 0.1 0.0028 16.7 0.1 1.5 1 1 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family DUF655 PF04919.7 gi|433590727|ref|YP_007280223.1| - 6.8e-64 214.9 0.1 8.1e-64 214.6 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF655) HHH_3 PF12836.2 gi|433590727|ref|YP_007280223.1| - 8.6e-05 22.4 0.0 0.00017 21.4 0.0 1.4 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_6 PF14579.1 gi|433590727|ref|YP_007280223.1| - 0.0018 18.3 0.0 0.0035 17.3 0.0 1.7 1 1 0 1 1 1 1 Helix-hairpin-helix motif AA_permease_2 PF13520.1 gi|433590728|ref|YP_007280224.1| - 1.6e-49 168.6 34.9 1.9e-49 168.3 24.2 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|433590728|ref|YP_007280224.1| - 1.3e-36 125.9 34.8 1.9e-36 125.4 24.2 1.2 1 0 0 1 1 1 1 Amino acid permease AA_permease_C PF13906.1 gi|433590728|ref|YP_007280224.1| - 4.4e-07 29.6 2.7 4.4e-07 29.6 1.9 3.4 4 0 0 4 4 4 1 C-terminus of AA_permease Cytochrom_B_N_2 PF13631.1 gi|433590728|ref|YP_007280224.1| - 1.1 9.0 13.3 2 8.2 0.0 3.4 2 1 2 4 4 4 0 Cytochrome b(N-terminal)/b6/petB RNA_pol_Rpb4 PF03874.11 gi|433590729|ref|YP_007280225.1| - 1.6e-14 53.9 0.5 1.8e-14 53.7 0.4 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb4 Cytokin_check_N PF10407.4 gi|433590729|ref|YP_007280225.1| - 0.018 14.6 0.2 0.036 13.6 0.1 1.6 1 1 1 2 2 2 0 Cdc14 phosphatase binding protein N-terminus Gluconate_2-dh3 PF13618.1 gi|433590729|ref|YP_007280225.1| - 0.13 12.4 1.7 1 9.5 1.2 2.1 1 1 1 2 2 2 0 Gluconate 2-dehydrogenase subunit 3 Ribosomal_L21e PF01157.13 gi|433590730|ref|YP_007280226.1| - 1.5e-33 114.4 0.1 1.8e-33 114.3 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L21e RrnaAD PF00398.15 gi|433590731|ref|YP_007280227.1| - 9.8e-47 159.1 0.0 1.2e-46 158.9 0.0 1.0 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_26 PF13659.1 gi|433590731|ref|YP_007280227.1| - 1.1e-07 31.8 0.1 1.9e-07 31.1 0.1 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|433590731|ref|YP_007280227.1| - 0.00033 21.1 0.1 0.00085 19.8 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|433590731|ref|YP_007280227.1| - 0.0045 17.4 0.0 0.01 16.3 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|433590731|ref|YP_007280227.1| - 0.043 13.1 0.0 0.064 12.6 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain Methyltransf_25 PF13649.1 gi|433590731|ref|YP_007280227.1| - 0.05 13.9 0.0 0.094 13.0 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain TrkA_N PF02254.13 gi|433590731|ref|YP_007280227.1| - 0.081 12.9 0.1 0.17 11.8 0.0 1.5 1 0 0 1 1 1 0 TrkA-N domain NodS PF05401.6 gi|433590731|ref|YP_007280227.1| - 0.12 11.7 0.0 0.23 10.8 0.0 1.4 1 0 0 1 1 1 0 Nodulation protein S (NodS) Methyltransf_23 PF13489.1 gi|433590731|ref|YP_007280227.1| - 0.14 11.8 0.0 0.17 11.5 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain MS_channel PF00924.13 gi|433590732|ref|YP_007280228.1| - 3.7e-50 170.1 0.2 5.7e-50 169.5 0.1 1.3 1 0 0 1 1 1 1 Mechanosensitive ion channel DUF4282 PF14110.1 gi|433590732|ref|YP_007280228.1| - 0.0069 16.5 0.1 0.0069 16.5 0.1 2.7 2 1 1 3 3 3 1 Domain of unknown function (DUF4282) DUF996 PF06195.8 gi|433590732|ref|YP_007280228.1| - 0.05 13.5 5.8 2.6 8.0 0.2 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF996) MVIN PF03023.9 gi|433590732|ref|YP_007280228.1| - 0.17 10.2 3.6 0.29 9.4 1.7 1.7 1 1 0 1 1 1 0 MviN-like protein DUF457 PF04307.9 gi|433590732|ref|YP_007280228.1| - 7.2 5.9 7.1 22 4.3 4.9 1.9 1 1 0 1 1 1 0 Predicted membrane-bound metal-dependent hydrolase (DUF457) Methyltransf_26 PF13659.1 gi|433590733|ref|YP_007280229.1| - 3.3e-17 62.5 0.1 5.5e-17 61.8 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|433590733|ref|YP_007280229.1| - 3.8e-11 42.6 0.0 5.5e-11 42.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_11 PF08241.7 gi|433590733|ref|YP_007280229.1| - 2e-08 34.6 0.0 2.6e-07 31.0 0.0 2.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|433590733|ref|YP_007280229.1| - 1.1e-05 25.9 0.0 2e-05 25.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|433590733|ref|YP_007280229.1| - 1.9e-05 24.2 0.0 2.7e-05 23.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|433590733|ref|YP_007280229.1| - 2.4e-05 24.6 0.0 4.6e-05 23.7 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|433590733|ref|YP_007280229.1| - 9.7e-05 22.1 0.0 0.00077 19.2 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain UPF0146 PF03686.8 gi|433590733|ref|YP_007280229.1| - 0.00093 19.0 0.0 0.0015 18.3 0.0 1.3 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0146) Methyltransf_12 PF08242.7 gi|433590733|ref|YP_007280229.1| - 0.00094 19.6 0.0 0.013 15.9 0.0 2.2 2 0 0 2 2 2 1 Methyltransferase domain PrmA PF06325.8 gi|433590733|ref|YP_007280229.1| - 0.0017 17.5 0.1 0.003 16.7 0.1 1.3 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_3 PF01596.12 gi|433590733|ref|YP_007280229.1| - 0.02 13.9 0.0 0.046 12.7 0.0 1.5 2 0 0 2 2 2 0 O-methyltransferase PCMT PF01135.14 gi|433590733|ref|YP_007280229.1| - 0.025 14.1 0.0 0.031 13.7 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MetW PF07021.7 gi|433590733|ref|YP_007280229.1| - 0.03 13.6 0.0 0.045 13.1 0.0 1.1 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW CMAS PF02353.15 gi|433590733|ref|YP_007280229.1| - 0.044 12.8 0.0 0.14 11.1 0.0 1.7 2 0 0 2 2 2 0 Mycolic acid cyclopropane synthetase PHP PF02811.14 gi|433590733|ref|YP_007280229.1| - 0.14 11.9 0.0 0.24 11.1 0.0 1.4 1 0 0 1 1 1 0 PHP domain Meth_synt_1 PF08267.7 gi|433590734|ref|YP_007280230.1| - 3.9e-25 88.7 0.0 3e-22 79.2 0.0 2.0 1 1 0 1 1 1 1 Cobalamin-independent synthase, N-terminal domain Meth_synt_2 PF01717.13 gi|433590734|ref|YP_007280230.1| - 7.6e-17 61.2 0.0 1e-16 60.8 0.0 1.1 1 0 0 1 1 1 1 Cobalamin-independent synthase, Catalytic domain Meth_synt_2 PF01717.13 gi|433590735|ref|YP_007280231.1| - 4.2e-80 269.1 0.0 4.9e-80 268.9 0.0 1.0 1 0 0 1 1 1 1 Cobalamin-independent synthase, Catalytic domain Meth_synt_1 PF08267.7 gi|433590735|ref|YP_007280231.1| - 8.3e-22 77.8 0.1 4.5e-21 75.4 0.0 1.8 2 0 0 2 2 2 1 Cobalamin-independent synthase, N-terminal domain URO-D PF01208.12 gi|433590735|ref|YP_007280231.1| - 0.00067 18.6 0.0 0.00099 18.1 0.0 1.2 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) GFO_IDH_MocA PF01408.17 gi|433590737|ref|YP_007280233.1| - 5.8e-17 62.3 0.0 1e-16 61.5 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|433590737|ref|YP_007280233.1| - 1.6e-12 47.1 0.4 4.7e-11 42.4 0.1 2.4 2 0 0 2 2 2 1 Oxidoreductase family, C-terminal alpha/beta domain 4HBT_2 PF13279.1 gi|433590738|ref|YP_007280234.1| - 8.6e-12 45.5 0.0 1.1e-11 45.2 0.0 1.1 1 0 0 1 1 1 1 Thioesterase-like superfamily 4HBT PF03061.17 gi|433590738|ref|YP_007280234.1| - 5.9e-09 35.9 0.2 9.2e-09 35.3 0.1 1.3 1 0 0 1 1 1 1 Thioesterase superfamily Acyl-ACP_TE PF01643.12 gi|433590738|ref|YP_007280234.1| - 0.0041 16.0 0.0 0.0081 15.1 0.0 1.4 1 1 0 1 1 1 1 Acyl-ACP thioesterase 4HBT_3 PF13622.1 gi|433590738|ref|YP_007280234.1| - 0.025 14.3 0.2 0.03 14.0 0.1 1.1 1 0 0 1 1 1 0 Thioesterase-like superfamily HD PF01966.17 gi|433590740|ref|YP_007280236.1| - 7.3e-11 42.1 1.7 1.5e-10 41.1 1.2 1.6 1 0 0 1 1 1 1 HD domain D-aminoacyl_C PF07908.7 gi|433590740|ref|YP_007280236.1| - 0.048 12.9 0.0 19 4.6 0.0 3.6 3 0 0 3 3 3 0 D-aminoacylase, C-terminal region TrkA_C PF02080.16 gi|433590741|ref|YP_007280237.1| - 1.5e-20 72.5 0.4 4.6e-20 70.9 0.0 1.9 2 1 0 2 2 2 1 TrkA-C domain Na_H_Exchanger PF00999.16 gi|433590742|ref|YP_007280238.1| - 8.7e-50 169.3 51.7 1.2e-49 168.8 35.8 1.1 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family Amidohydro_1 PF01979.15 gi|433590743|ref|YP_007280239.1| - 5.3e-22 78.9 0.0 3.9e-15 56.3 0.0 2.1 1 1 1 2 2 2 2 Amidohydrolase family Amidohydro_4 PF13147.1 gi|433590743|ref|YP_007280239.1| - 2.9e-10 40.6 7.2 6.5e-10 39.4 5.0 1.6 1 1 0 1 1 1 1 Amidohydrolase Amidohydro_5 PF13594.1 gi|433590743|ref|YP_007280239.1| - 2.8e-05 23.8 0.0 6.2e-05 22.7 0.0 1.6 1 0 0 1 1 1 1 Amidohydrolase A_deaminase PF00962.17 gi|433590743|ref|YP_007280239.1| - 0.00022 20.2 0.0 0.00036 19.5 0.0 1.3 1 0 0 1 1 1 1 Adenosine/AMP deaminase Amidohydro_3 PF07969.6 gi|433590743|ref|YP_007280239.1| - 0.024 13.8 4.5 0.65 9.1 0.0 3.1 1 1 1 3 3 3 0 Amidohydrolase family Hexapep PF00132.19 gi|433590744|ref|YP_007280240.1| - 2.9e-18 64.4 7.0 6.3e-07 28.6 0.6 3.3 2 1 1 3 3 3 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|433590744|ref|YP_007280240.1| - 7.5e-07 28.5 7.2 2.1e-05 23.9 0.4 3.1 2 1 1 3 3 3 3 Hexapeptide repeat of succinyl-transferase DUF3006 PF11213.3 gi|433590745|ref|YP_007280241.1| - 0.00011 21.8 2.4 0.03 14.0 0.3 2.3 2 0 0 2 2 2 2 Protein of unknown function (DUF3006) Lactamase_B PF00753.22 gi|433590746|ref|YP_007280242.1| - 3.2e-10 39.9 9.6 7.1e-10 38.8 6.7 1.9 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|433590746|ref|YP_007280242.1| - 5.2e-05 22.8 0.1 6.9e-05 22.4 0.1 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|433590746|ref|YP_007280242.1| - 0.057 13.1 2.3 0.11 12.2 1.6 1.7 1 1 0 1 1 1 0 Beta-lactamase superfamily domain OsmC PF02566.14 gi|433590747|ref|YP_007280243.1| - 8.2e-11 41.9 0.0 1.1e-10 41.5 0.0 1.2 1 0 0 1 1 1 1 OsmC-like protein DUF457 PF04307.9 gi|433590749|ref|YP_007280245.1| - 6.6e-13 48.2 15.2 8.7e-13 47.8 10.5 1.2 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) OapA_N PF08525.6 gi|433590749|ref|YP_007280245.1| - 4 7.3 7.0 1 9.1 0.1 3.2 4 0 0 4 4 4 0 Opacity-associated protein A N-terminal motif Lactamase_B_3 PF13483.1 gi|433590750|ref|YP_007280246.1| - 1e-19 70.8 0.4 1.4e-19 70.4 0.3 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.2 gi|433590750|ref|YP_007280246.1| - 1.1e-14 54.4 0.2 1.5e-14 54.0 0.1 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|433590750|ref|YP_007280246.1| - 6.2e-10 39.0 2.6 7.5e-10 38.7 1.2 1.5 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily tRNA_anti-codon PF01336.20 gi|433590752|ref|YP_007280248.1| - 9.8e-10 38.1 0.0 2e-09 37.2 0.0 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain S1 PF00575.18 gi|433590752|ref|YP_007280248.1| - 9.9e-10 38.3 0.2 4.9e-09 36.1 0.0 2.3 2 0 0 2 2 2 1 S1 RNA binding domain tRNA_anti_2 PF13742.1 gi|433590752|ref|YP_007280248.1| - 0.00016 21.4 0.0 0.00034 20.4 0.0 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain BOF PF04076.8 gi|433590752|ref|YP_007280248.1| - 0.0039 16.9 0.1 0.013 15.2 0.1 1.9 1 0 0 1 1 1 1 Bacterial OB fold (BOF) protein DUF3897 PF13036.1 gi|433590752|ref|YP_007280248.1| - 0.047 13.3 0.1 0.11 12.0 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3897) Sporozoite_P67 PF05642.6 gi|433590752|ref|YP_007280248.1| - 0.27 9.0 8.2 0.38 8.5 5.7 1.2 1 0 0 1 1 1 0 Sporozoite P67 surface antigen Lin-8 PF03353.10 gi|433590752|ref|YP_007280248.1| - 0.72 9.0 7.6 1.2 8.4 5.3 1.2 1 0 0 1 1 1 0 Ras-mediated vulval-induction antagonist SHOCT PF09851.4 gi|433590753|ref|YP_007280249.1| - 1.2e-09 37.2 4.7 2.1e-09 36.5 3.3 1.4 1 0 0 1 1 1 1 Short C-terminal domain GvpG PF05120.7 gi|433590753|ref|YP_007280249.1| - 0.0012 18.5 3.3 0.0019 17.9 2.3 1.2 1 0 0 1 1 1 1 Gas vesicle protein G DUF1707 PF08044.6 gi|433590753|ref|YP_007280249.1| - 0.0065 16.1 4.2 0.012 15.3 2.9 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1707) DUF3099 PF11298.3 gi|433590753|ref|YP_007280249.1| - 0.055 13.2 0.4 0.088 12.5 0.3 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3099) HA PF03457.9 gi|433590753|ref|YP_007280249.1| - 0.089 12.8 0.3 1.9 8.6 0.1 2.4 2 0 0 2 2 2 0 Helicase associated domain DUF2029 PF09594.5 gi|433590753|ref|YP_007280249.1| - 0.24 10.8 4.9 0.33 10.4 3.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2029) PhaG_MnhG_YufB PF03334.9 gi|433590754|ref|YP_007280250.1| - 1e-24 86.3 5.6 1.3e-24 86.0 3.9 1.1 1 0 0 1 1 1 1 Na+/H+ antiporter subunit MrpF_PhaF PF04066.8 gi|433590755|ref|YP_007280251.1| - 1.7e-16 60.1 8.9 1.7e-16 60.1 6.1 1.5 2 0 0 2 2 2 1 Multiple resistance and pH regulation protein F (MrpF / PhaF) CoA_transf_3 PF02515.12 gi|433590755|ref|YP_007280251.1| - 0.002 17.3 0.3 0.0022 17.2 0.2 1.1 1 0 0 1 1 1 1 CoA-transferase family III TctB PF07331.6 gi|433590755|ref|YP_007280251.1| - 0.15 11.7 5.7 0.19 11.3 4.0 1.1 1 0 0 1 1 1 0 Tripartite tricarboxylate transporter TctB family DUF3487 PF11990.3 gi|433590755|ref|YP_007280251.1| - 0.48 9.8 4.8 0.3 10.4 2.1 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3487) MLTD_N PF06474.7 gi|433590755|ref|YP_007280251.1| - 0.51 10.5 5.0 9.3 6.5 0.6 2.5 2 0 0 2 2 2 0 MltD lipid attachment motif Colicin PF01024.14 gi|433590755|ref|YP_007280251.1| - 5.7 6.4 5.9 7.5 6.0 4.1 1.2 1 0 0 1 1 1 0 Colicin pore forming domain MNHE PF01899.11 gi|433590756|ref|YP_007280252.1| - 5e-39 133.4 0.2 5.9e-39 133.1 0.1 1.0 1 0 0 1 1 1 1 Na+/H+ ion antiporter subunit DUF4229 PF14012.1 gi|433590756|ref|YP_007280252.1| - 0.057 13.3 2.4 0.12 12.3 1.7 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF4229) Oxidored_q1 PF00361.15 gi|433590757|ref|YP_007280253.1| - 9.9e-44 149.6 8.5 4.9e-23 81.7 2.1 2.3 2 0 0 2 2 2 2 NADH-Ubiquinone/plastoquinone (complex I), various chains NADHdeh_related PF10125.4 gi|433590757|ref|YP_007280253.1| - 0.00049 19.3 4.8 0.00049 19.3 3.3 2.5 2 0 0 2 2 2 1 NADH dehydrogenase I, subunit N related protein DUF4407 PF14362.1 gi|433590757|ref|YP_007280253.1| - 0.15 11.0 3.2 0.34 9.8 2.2 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) Oxidored_q2 PF00420.19 gi|433590758|ref|YP_007280254.1| - 1.2e-24 85.6 0.9 1.6e-24 85.2 0.6 1.2 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L MnhB PF04039.8 gi|433590759|ref|YP_007280255.1| - 2.3e-22 79.3 14.6 1.6e-16 60.4 4.2 2.0 1 1 1 2 2 2 2 Domain related to MnhB subunit of Na+/H+ antiporter Oxidored_q1 PF00361.15 gi|433590760|ref|YP_007280256.1| - 5.3e-62 209.5 8.0 5.3e-62 209.5 5.5 2.5 3 0 0 3 3 3 1 NADH-Ubiquinone/plastoquinone (complex I), various chains DUF4040 PF13244.1 gi|433590760|ref|YP_007280256.1| - 1.2e-16 60.4 8.5 1.2e-16 60.4 5.9 5.6 5 1 0 5 5 5 1 Domain of unknown function (DUF4040) Oxidored_q1_N PF00662.15 gi|433590760|ref|YP_007280256.1| - 7.6e-08 31.8 0.0 3.4e-07 29.7 0.0 2.2 1 0 0 1 1 1 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Radical_SAM PF04055.16 gi|433590761|ref|YP_007280257.1| - 2.2e-22 79.9 0.0 4.9e-22 78.8 0.0 1.6 1 0 0 1 1 1 1 Radical SAM superfamily Acetyltransf_1 PF00583.19 gi|433590761|ref|YP_007280257.1| - 4e-10 39.5 0.0 1.1e-09 38.1 0.0 1.9 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|433590761|ref|YP_007280257.1| - 0.02 15.0 0.0 0.069 13.2 0.0 2.0 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|433590761|ref|YP_007280257.1| - 0.14 12.3 0.1 0.98 9.6 0.1 2.2 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain YwiC PF14256.1 gi|433590762|ref|YP_007280258.1| - 0.59 10.2 4.7 2.9 7.9 2.8 1.9 1 1 0 1 1 1 0 YwiC-like protein DUF4233 PF14017.1 gi|433590762|ref|YP_007280258.1| - 1.6 8.7 6.4 6.2 6.7 2.3 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF4233) DUF2157 PF09925.4 gi|433590762|ref|YP_007280258.1| - 3.2 7.3 6.2 2.9 7.5 0.5 2.1 1 1 1 2 2 2 0 Predicted membrane protein (DUF2157) PLDc_N PF13396.1 gi|433590762|ref|YP_007280258.1| - 6.5 6.5 7.1 0.68 9.6 1.5 1.9 2 0 0 2 2 2 0 Phospholipase_D-nuclease N-terminal Zip PF02535.17 gi|433590763|ref|YP_007280259.1| - 1.1e-17 64.0 14.0 8.9e-17 61.0 1.9 2.1 2 0 0 2 2 2 2 ZIP Zinc transporter FbpA PF05833.6 gi|433590765|ref|YP_007280261.1| - 1.4e-84 284.2 0.0 3.3e-84 283.0 0.0 1.6 2 0 0 2 2 2 1 Fibronectin-binding protein A N-terminus (FbpA) DUF814 PF05670.8 gi|433590765|ref|YP_007280261.1| - 1e-24 86.1 0.0 1.7e-24 85.4 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF814) Laminin_I PF06008.9 gi|433590765|ref|YP_007280261.1| - 0.032 13.5 3.5 0.25 10.6 0.2 2.4 2 0 0 2 2 2 0 Laminin Domain I THOC7 PF05615.8 gi|433590765|ref|YP_007280261.1| - 0.087 13.0 8.7 2.1 8.5 0.6 2.5 2 0 0 2 2 2 0 Tho complex subunit 7 Pyr_redox_2 PF07992.9 gi|433590766|ref|YP_007280262.1| - 4.3e-21 75.7 0.2 5.2e-21 75.4 0.1 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|433590766|ref|YP_007280262.1| - 2e-20 72.9 1.4 2.5e-17 63.0 0.0 2.4 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|433590766|ref|YP_007280262.1| - 9.5e-16 58.4 0.2 1.9e-11 44.4 0.0 2.7 2 1 1 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|433590766|ref|YP_007280262.1| - 2.2e-09 36.7 0.4 6.6e-05 21.9 0.1 3.4 3 0 0 3 3 3 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|433590766|ref|YP_007280262.1| - 2.4e-09 36.5 9.6 3.2e-05 22.9 0.2 4.3 4 1 1 5 5 5 3 FAD binding domain NAD_binding_8 PF13450.1 gi|433590766|ref|YP_007280262.1| - 1.2e-06 28.3 0.1 4.6e-05 23.3 0.1 2.6 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.12 gi|433590766|ref|YP_007280262.1| - 2.3e-05 23.6 0.2 0.0015 17.6 0.1 2.3 2 0 0 2 2 2 1 Thi4 family HI0933_like PF03486.9 gi|433590766|ref|YP_007280262.1| - 4.9e-05 21.9 0.1 0.05 12.0 0.0 3.2 3 0 0 3 3 3 1 HI0933-like protein GIDA PF01134.17 gi|433590766|ref|YP_007280262.1| - 0.00012 21.0 0.9 0.028 13.3 0.0 3.2 4 0 0 4 4 4 1 Glucose inhibited division protein A NAD_binding_7 PF13241.1 gi|433590766|ref|YP_007280262.1| - 0.00016 21.8 0.1 0.0042 17.3 0.0 2.4 2 0 0 2 2 2 1 Putative NAD(P)-binding FAD_oxidored PF12831.2 gi|433590766|ref|YP_007280262.1| - 0.00027 20.1 0.9 0.00048 19.3 0.2 1.7 2 0 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|433590766|ref|YP_007280262.1| - 0.0039 16.2 3.2 0.95 8.4 0.2 3.2 2 1 1 3 3 3 1 FAD binding domain K_oxygenase PF13434.1 gi|433590766|ref|YP_007280262.1| - 0.0057 15.6 0.0 0.051 12.4 0.0 2.1 2 0 0 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) Lycopene_cycl PF05834.7 gi|433590766|ref|YP_007280262.1| - 0.013 14.4 0.3 3.2 6.5 0.2 3.0 3 0 0 3 3 3 0 Lycopene cyclase protein FMO-like PF00743.14 gi|433590766|ref|YP_007280262.1| - 0.14 10.2 0.0 2.9 6.0 0.0 2.0 2 0 0 2 2 2 0 Flavin-binding monooxygenase-like Thioredoxin PF00085.15 gi|433590767|ref|YP_007280263.1| - 1.3e-28 98.7 0.0 1.5e-28 98.5 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|433590767|ref|YP_007280263.1| - 6.9e-13 48.7 0.1 1.9e-11 44.1 0.0 2.0 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_7 PF13899.1 gi|433590767|ref|YP_007280263.1| - 8.8e-08 32.0 0.0 1.5e-07 31.3 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin-like Thioredoxin_8 PF13905.1 gi|433590767|ref|YP_007280263.1| - 1.5e-07 31.4 0.0 2.5e-05 24.3 0.0 2.1 1 1 1 2 2 2 2 Thioredoxin-like Thioredoxin_9 PF14595.1 gi|433590767|ref|YP_007280263.1| - 4.6e-05 22.9 0.0 5.3e-05 22.7 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin TraF PF13728.1 gi|433590767|ref|YP_007280263.1| - 0.00028 20.4 0.0 0.00038 20.0 0.0 1.2 1 0 0 1 1 1 1 F plasmid transfer operon protein DSBA PF01323.15 gi|433590767|ref|YP_007280263.1| - 0.00029 20.4 0.3 0.0033 16.9 0.0 2.0 1 1 1 2 2 2 1 DSBA-like thioredoxin domain AhpC-TSA PF00578.16 gi|433590767|ref|YP_007280263.1| - 0.00072 19.2 0.0 0.0014 18.2 0.0 1.4 1 1 0 1 1 1 1 AhpC/TSA family HyaE PF07449.6 gi|433590767|ref|YP_007280263.1| - 0.0013 18.6 0.0 0.002 17.9 0.0 1.3 1 0 0 1 1 1 1 Hydrogenase-1 expression protein HyaE Thioredoxin_3 PF13192.1 gi|433590767|ref|YP_007280263.1| - 0.0013 18.4 0.0 0.0017 18.1 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin domain Redoxin PF08534.5 gi|433590767|ref|YP_007280263.1| - 0.014 14.9 0.1 0.033 13.7 0.0 1.6 1 1 0 1 1 1 0 Redoxin DUF836 PF05768.9 gi|433590767|ref|YP_007280263.1| - 0.033 14.4 0.0 0.041 14.1 0.0 1.3 1 0 0 1 1 1 0 Glutaredoxin-like domain (DUF836) Glutaredoxin PF00462.19 gi|433590767|ref|YP_007280263.1| - 0.033 14.1 0.0 0.058 13.3 0.0 1.5 1 0 0 1 1 1 0 Glutaredoxin DIM1 PF02966.11 gi|433590767|ref|YP_007280263.1| - 0.073 12.5 0.0 0.084 12.3 0.0 1.1 1 0 0 1 1 1 0 Mitosis protein DIM1 Usp PF00582.21 gi|433590768|ref|YP_007280264.1| - 2.2e-33 115.3 1.8 2.5e-33 115.2 1.3 1.0 1 0 0 1 1 1 1 Universal stress protein family Con-6 PF10346.4 gi|433590768|ref|YP_007280264.1| - 0.0051 16.1 0.1 0.0082 15.5 0.1 1.3 1 0 0 1 1 1 1 Conidiation protein 6 Lactamase_B PF00753.22 gi|433590769|ref|YP_007280265.1| - 3.7e-19 69.1 3.1 6.1e-19 68.4 2.2 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Rhodanese PF00581.15 gi|433590769|ref|YP_007280265.1| - 1.2e-14 54.5 0.0 2.3e-14 53.7 0.0 1.4 1 0 0 1 1 1 1 Rhodanese-like domain Lactamase_B_3 PF13483.1 gi|433590769|ref|YP_007280265.1| - 0.053 13.2 0.1 0.092 12.4 0.0 1.4 1 0 0 1 1 1 0 Beta-lactamase superfamily domain Pyridox_ox_2 PF12900.2 gi|433590770|ref|YP_007280266.1| - 2.4e-16 59.8 0.0 2.7e-16 59.6 0.0 1.0 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_oxidase PF01243.15 gi|433590770|ref|YP_007280266.1| - 0.022 14.7 0.0 0.031 14.2 0.0 1.2 1 0 0 1 1 1 0 Pyridoxamine 5'-phosphate oxidase Usp PF00582.21 gi|433590771|ref|YP_007280267.1| - 7.2e-31 107.2 0.2 9.1e-31 106.9 0.1 1.1 1 0 0 1 1 1 1 Universal stress protein family ETF PF01012.16 gi|433590771|ref|YP_007280267.1| - 0.036 13.8 0.1 0.052 13.2 0.1 1.3 1 0 0 1 1 1 0 Electron transfer flavoprotein domain DUF1906 PF08924.6 gi|433590771|ref|YP_007280267.1| - 0.079 12.8 0.5 0.12 12.2 0.4 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1906) CBS PF00571.23 gi|433590772|ref|YP_007280268.1| - 2.1e-27 94.5 4.0 1e-13 50.8 0.0 2.2 2 0 0 2 2 2 2 CBS domain NosL PF05573.7 gi|433590773|ref|YP_007280269.1| - 8.5e-34 116.4 0.0 1e-33 116.1 0.0 1.1 1 0 0 1 1 1 1 NosL TAT_signal PF10518.4 gi|433590773|ref|YP_007280269.1| - 0.03 14.3 3.6 0.054 13.5 2.5 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence DUF2816 PF10992.3 gi|433590773|ref|YP_007280269.1| - 0.049 13.2 1.2 0.082 12.5 0.8 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2816) ABC2_membrane_4 PF12730.2 gi|433590774|ref|YP_007280270.1| - 1.4e-07 30.9 7.0 2e-07 30.4 4.9 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|433590774|ref|YP_007280270.1| - 1.9e-07 30.2 20.9 8.7e-07 28.0 14.5 1.8 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|433590774|ref|YP_007280270.1| - 0.012 14.6 10.7 0.013 14.5 7.1 1.2 1 1 0 1 1 1 0 ABC-2 family transporter protein ABC_tran PF00005.22 gi|433590775|ref|YP_007280271.1| - 4.4e-26 91.8 0.0 6.2e-26 91.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|433590775|ref|YP_007280271.1| - 1.4e-16 61.3 0.0 2.2e-07 31.1 0.0 2.1 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|433590775|ref|YP_007280271.1| - 5.9e-05 22.3 0.0 0.17 11.1 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_28 PF13521.1 gi|433590775|ref|YP_007280271.1| - 0.00041 20.3 0.2 0.001 19.0 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|433590775|ref|YP_007280271.1| - 0.00058 19.3 0.1 0.00099 18.5 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_25 PF13481.1 gi|433590775|ref|YP_007280271.1| - 0.002 17.5 0.6 0.007 15.7 0.0 2.0 2 1 0 2 2 2 1 AAA domain AAA_23 PF13476.1 gi|433590775|ref|YP_007280271.1| - 0.0025 18.1 0.0 0.0033 17.7 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_13 PF13166.1 gi|433590775|ref|YP_007280271.1| - 0.0025 16.3 0.0 0.19 10.1 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|433590775|ref|YP_007280271.1| - 0.0026 17.7 0.1 0.0051 16.8 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|433590775|ref|YP_007280271.1| - 0.0044 17.1 0.1 0.0056 16.8 0.1 1.5 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|433590775|ref|YP_007280271.1| - 0.0055 16.5 0.1 0.012 15.4 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.1 gi|433590775|ref|YP_007280271.1| - 0.0062 16.1 1.3 0.012 15.1 0.1 1.9 2 0 0 2 2 2 1 AAA domain SRP54 PF00448.17 gi|433590775|ref|YP_007280271.1| - 0.021 14.2 0.1 0.034 13.5 0.1 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA PF00004.24 gi|433590775|ref|YP_007280271.1| - 0.022 14.9 0.2 0.039 14.1 0.1 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) DUF258 PF03193.11 gi|433590775|ref|YP_007280271.1| - 0.026 13.6 0.0 0.039 13.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 NACHT PF05729.7 gi|433590775|ref|YP_007280271.1| - 0.027 14.1 0.1 0.042 13.4 0.1 1.3 1 0 0 1 1 1 0 NACHT domain AAA_19 PF13245.1 gi|433590775|ref|YP_007280271.1| - 0.033 13.9 0.7 0.033 13.9 0.5 2.0 2 0 0 2 2 2 0 Part of AAA domain UPF0079 PF02367.12 gi|433590775|ref|YP_007280271.1| - 0.04 13.5 0.1 0.069 12.7 0.1 1.3 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 MobB PF03205.9 gi|433590775|ref|YP_007280271.1| - 0.041 13.5 0.1 0.086 12.5 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_5 PF07728.9 gi|433590775|ref|YP_007280271.1| - 0.047 13.4 0.2 0.099 12.3 0.1 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_10 PF12846.2 gi|433590775|ref|YP_007280271.1| - 0.051 12.9 0.0 0.78 9.1 0.0 2.0 2 0 0 2 2 2 0 AAA-like domain AAA_17 PF13207.1 gi|433590775|ref|YP_007280271.1| - 0.053 14.3 0.1 0.15 12.8 0.0 1.9 2 1 0 2 2 2 0 AAA domain cobW PF02492.14 gi|433590775|ref|YP_007280271.1| - 0.079 12.4 1.5 0.086 12.2 0.2 1.6 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain Miro PF08477.8 gi|433590775|ref|YP_007280271.1| - 0.096 13.1 0.0 0.16 12.4 0.0 1.3 1 0 0 1 1 1 0 Miro-like protein ATP-synt_ab PF00006.20 gi|433590775|ref|YP_007280271.1| - 0.096 12.1 0.0 0.18 11.3 0.0 1.5 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_24 PF13479.1 gi|433590775|ref|YP_007280271.1| - 0.1 12.1 0.2 0.2 11.2 0.1 1.4 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|433590775|ref|YP_007280271.1| - 0.12 12.2 0.0 0.23 11.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|433590775|ref|YP_007280271.1| - 0.14 12.5 0.0 0.45 10.8 0.0 1.8 2 0 0 2 2 2 0 AAA domain NosD PF05048.8 gi|433590776|ref|YP_007280272.1| - 1.2e-29 103.1 0.6 1.1e-23 83.6 0.1 2.2 1 1 1 2 2 2 2 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.1 gi|433590776|ref|YP_007280272.1| - 4.4e-18 65.5 5.1 1.3e-14 54.2 1.8 2.5 1 1 1 2 2 2 2 Right handed beta helix region NosL PF05573.7 gi|433590776|ref|YP_007280272.1| - 7.9e-17 61.3 0.2 1.6e-16 60.3 0.1 1.4 1 0 0 1 1 1 1 NosL DUF1565 PF07602.6 gi|433590776|ref|YP_007280272.1| - 0.00011 21.4 7.6 0.042 12.9 0.4 2.4 1 1 1 2 2 2 2 Protein of unknown function (DUF1565) DUF302 PF03625.9 gi|433590778|ref|YP_007280274.1| - 1.1e-19 69.7 0.0 1.8e-19 69.0 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function DUF302 Methyltransf_11 PF08241.7 gi|433590779|ref|YP_007280275.1| - 5.8e-19 68.3 0.0 9.8e-19 67.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|433590779|ref|YP_007280275.1| - 7.2e-12 45.3 0.0 2e-11 43.8 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|433590779|ref|YP_007280275.1| - 8.5e-11 42.4 0.0 1.6e-10 41.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|433590779|ref|YP_007280275.1| - 1.9e-10 40.5 0.0 2.3e-10 40.2 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|433590779|ref|YP_007280275.1| - 2.1e-09 37.6 0.0 3.7e-09 36.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|433590779|ref|YP_007280275.1| - 2.9e-08 33.7 0.1 5.4e-08 32.8 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|433590779|ref|YP_007280275.1| - 3.3e-06 27.5 0.0 5.8e-06 26.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|433590779|ref|YP_007280275.1| - 7e-06 25.2 0.0 9.3e-06 24.8 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Ubie_methyltran PF01209.13 gi|433590779|ref|YP_007280275.1| - 2.3e-05 23.6 0.0 3.7e-05 22.9 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family FtsJ PF01728.14 gi|433590779|ref|YP_007280275.1| - 4.5e-05 23.5 0.0 6e-05 23.1 0.0 1.2 1 0 0 1 1 1 1 FtsJ-like methyltransferase DREV PF05219.7 gi|433590779|ref|YP_007280275.1| - 6.8e-05 21.8 0.0 0.00014 20.8 0.0 1.5 1 1 0 1 1 1 1 DREV methyltransferase MTS PF05175.9 gi|433590779|ref|YP_007280275.1| - 0.00028 20.3 0.0 0.00048 19.5 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_8 PF05148.10 gi|433590779|ref|YP_007280275.1| - 0.0014 18.2 0.0 0.0042 16.7 0.0 1.9 1 1 0 1 1 1 1 Hypothetical methyltransferase Methyltransf_24 PF13578.1 gi|433590779|ref|YP_007280275.1| - 0.013 16.3 0.2 0.025 15.4 0.1 1.5 1 1 0 1 1 1 0 Methyltransferase domain Gp37_Gp68 PF07505.6 gi|433590779|ref|YP_007280275.1| - 0.019 14.1 0.0 0.027 13.6 0.0 1.2 1 0 0 1 1 1 0 Phage protein Gp37/Gp68 ADH_zinc_N_2 PF13602.1 gi|433590779|ref|YP_007280275.1| - 0.15 12.9 0.5 12 6.8 0.1 2.4 1 1 1 2 2 2 0 Zinc-binding dehydrogenase Cyto_ox_2 PF02322.10 gi|433590781|ref|YP_007280277.1| - 1.4e-73 247.9 30.3 2e-73 247.4 21.0 1.2 1 0 0 1 1 1 1 Cytochrome oxidase subunit II Bac_Ubq_Cox PF01654.12 gi|433590782|ref|YP_007280278.1| - 1.4e-134 448.8 24.5 1.6e-134 448.5 17.0 1.0 1 0 0 1 1 1 1 Bacterial Cytochrome Ubiquinol Oxidase Thioredoxin_4 PF13462.1 gi|433590783|ref|YP_007280279.1| - 5.6e-24 84.9 0.0 6.6e-24 84.7 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|433590783|ref|YP_007280279.1| - 8.6e-13 48.4 0.0 2.3e-12 47.0 0.0 1.6 1 1 0 1 1 1 1 Thioredoxin-like domain DSBA PF01323.15 gi|433590783|ref|YP_007280279.1| - 7.1e-12 45.2 0.4 5e-09 35.9 0.3 2.1 1 1 0 1 1 1 1 DSBA-like thioredoxin domain Thioredoxin_5 PF13743.1 gi|433590783|ref|YP_007280279.1| - 0.00031 20.3 0.0 0.00094 18.7 0.0 1.7 2 0 0 2 2 2 1 Thioredoxin Thioredoxin_8 PF13905.1 gi|433590783|ref|YP_007280279.1| - 0.038 14.0 0.0 1.1 9.4 0.0 2.1 2 0 0 2 2 2 0 Thioredoxin-like Thioredoxin PF00085.15 gi|433590783|ref|YP_007280279.1| - 0.093 12.4 0.0 0.18 11.5 0.0 1.5 1 0 0 1 1 1 0 Thioredoxin DUF3735 PF12537.3 gi|433590784|ref|YP_007280280.1| - 4.5 7.3 9.3 10 6.2 0.2 3.3 2 2 1 3 3 3 0 Protein of unknown function (DUF3735) MerT PF02411.10 gi|433590785|ref|YP_007280281.1| - 0.0087 15.8 1.1 0.015 15.1 0.7 1.4 1 0 0 1 1 1 1 MerT mercuric transport protein HTH_20 PF12840.2 gi|433590786|ref|YP_007280282.1| - 2.8e-08 33.4 0.2 7.1e-08 32.1 0.0 1.7 1 1 1 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|433590786|ref|YP_007280282.1| - 3.5e-06 26.2 0.0 5.4e-06 25.6 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|433590786|ref|YP_007280282.1| - 0.00017 21.0 0.1 0.00033 20.1 0.1 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain FUR PF01475.14 gi|433590786|ref|YP_007280282.1| - 0.00036 20.4 0.1 0.00046 20.0 0.1 1.1 1 0 0 1 1 1 1 Ferric uptake regulator family HTH_11 PF08279.7 gi|433590786|ref|YP_007280282.1| - 0.0011 18.5 0.0 0.0022 17.5 0.0 1.5 1 0 0 1 1 1 1 HTH domain TrmB PF01978.14 gi|433590786|ref|YP_007280282.1| - 0.0031 17.1 0.0 0.0048 16.5 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|433590786|ref|YP_007280282.1| - 0.0038 16.7 0.0 0.0081 15.7 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain Phage_rep_org_N PF09681.5 gi|433590786|ref|YP_007280282.1| - 0.011 15.2 0.0 0.016 14.7 0.0 1.3 1 0 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) HTH_27 PF13463.1 gi|433590786|ref|YP_007280282.1| - 0.012 15.9 0.1 0.02 15.1 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|433590786|ref|YP_007280282.1| - 0.026 14.1 0.1 0.04 13.5 0.1 1.4 1 0 0 1 1 1 0 MarR family PadR PF03551.9 gi|433590786|ref|YP_007280282.1| - 0.035 13.8 0.0 0.056 13.2 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family HTH_23 PF13384.1 gi|433590786|ref|YP_007280282.1| - 0.05 13.2 0.0 0.081 12.6 0.0 1.3 1 0 0 1 1 1 0 Homeodomain-like domain DUF2857 PF11198.3 gi|433590786|ref|YP_007280282.1| - 0.059 12.8 0.0 0.11 12.0 0.0 1.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2857) DUF2250 PF10007.4 gi|433590786|ref|YP_007280282.1| - 0.12 12.2 0.0 0.17 11.8 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) DUF2776 PF10951.3 gi|433590787|ref|YP_007280283.1| - 0.0065 15.5 1.6 0.0071 15.4 1.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2776) DUF4229 PF14012.1 gi|433590787|ref|YP_007280283.1| - 0.049 13.5 0.3 0.049 13.5 0.2 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF4229) Corona_NS3b PF03053.9 gi|433590787|ref|YP_007280283.1| - 0.082 12.4 0.3 0.082 12.4 0.2 1.2 1 0 0 1 1 1 0 ORF3b coronavirus protein PMT_2 PF13231.1 gi|433590787|ref|YP_007280283.1| - 0.21 11.4 5.0 4 7.3 0.4 2.0 1 1 1 2 2 2 0 Dolichyl-phosphate-mannose-protein mannosyltransferase 7TMR-DISM_7TM PF07695.6 gi|433590787|ref|YP_007280283.1| - 0.26 10.9 8.0 0.28 10.8 5.5 1.0 1 0 0 1 1 1 0 7TM diverse intracellular signalling TauE PF01925.14 gi|433590788|ref|YP_007280284.1| - 6.1e-16 58.6 32.4 6.1e-16 58.6 22.4 1.5 2 0 0 2 2 2 1 Sulfite exporter TauE/SafE Multi_Drug_Res PF00893.14 gi|433590788|ref|YP_007280284.1| - 0.63 10.5 11.1 2.9 8.4 0.6 3.2 3 0 0 3 3 3 0 Small Multidrug Resistance protein Thioredoxin PF00085.15 gi|433590789|ref|YP_007280285.1| - 3e-14 52.5 0.0 3.5e-14 52.3 0.0 1.0 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|433590789|ref|YP_007280285.1| - 5.6e-05 23.3 0.0 0.021 15.0 0.0 2.1 1 1 1 2 2 2 2 Thioredoxin-like domain TrbC_Ftype PF09673.5 gi|433590789|ref|YP_007280285.1| - 0.0034 16.9 0.0 0.004 16.7 0.0 1.1 1 0 0 1 1 1 1 Type-F conjugative transfer system pilin assembly protein Thioredoxin_3 PF13192.1 gi|433590789|ref|YP_007280285.1| - 0.0049 16.6 0.0 0.007 16.1 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin domain Toprim_3 PF13362.1 gi|433590789|ref|YP_007280285.1| - 0.016 15.4 0.3 0.037 14.2 0.0 1.6 2 0 0 2 2 2 0 Toprim domain HyaE PF07449.6 gi|433590789|ref|YP_007280285.1| - 0.017 15.0 0.0 0.048 13.5 0.0 1.7 2 0 0 2 2 2 0 Hydrogenase-1 expression protein HyaE DUF836 PF05768.9 gi|433590789|ref|YP_007280285.1| - 0.12 12.6 0.0 0.16 12.2 0.0 1.3 1 0 0 1 1 1 0 Glutaredoxin-like domain (DUF836) Thioredoxin_8 PF13905.1 gi|433590789|ref|YP_007280285.1| - 0.16 12.0 0.0 9 6.4 0.0 2.1 1 1 1 2 2 2 0 Thioredoxin-like TrmB PF01978.14 gi|433590790|ref|YP_007280286.1| - 1.3e-15 56.8 0.0 1.8e-15 56.4 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|433590790|ref|YP_007280286.1| - 6.1e-05 22.5 0.0 0.00011 21.6 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain Penicillinase_R PF03965.11 gi|433590790|ref|YP_007280286.1| - 7.5e-05 22.7 0.0 0.00011 22.3 0.0 1.2 1 0 0 1 1 1 1 Penicillinase repressor MarR PF01047.17 gi|433590790|ref|YP_007280286.1| - 0.00011 21.8 0.1 0.00028 20.5 0.0 1.7 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.7 gi|433590790|ref|YP_007280286.1| - 0.0004 19.9 0.0 0.00071 19.1 0.0 1.4 1 0 0 1 1 1 1 HTH domain HTH_27 PF13463.1 gi|433590790|ref|YP_007280286.1| - 0.00045 20.4 0.0 0.00066 19.9 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|433590790|ref|YP_007280286.1| - 0.0012 18.4 0.0 0.0019 17.8 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_38 PF13936.1 gi|433590790|ref|YP_007280286.1| - 0.0017 17.8 0.0 0.0038 16.7 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_20 PF12840.2 gi|433590790|ref|YP_007280286.1| - 0.002 17.9 0.0 0.0036 17.0 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|433590790|ref|YP_007280286.1| - 0.0048 16.2 0.0 0.0083 15.4 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding 2OG-Fe_Oxy_2 PF10014.4 gi|433590790|ref|YP_007280286.1| - 0.0075 15.6 0.1 0.0091 15.3 0.1 1.2 1 0 0 1 1 1 1 2OG-Fe dioxygenase Rio2_N PF09202.6 gi|433590790|ref|YP_007280286.1| - 0.047 13.7 0.3 0.2 11.7 0.2 1.9 1 1 0 1 1 1 0 Rio2, N-terminal RuvB_C PF05491.8 gi|433590790|ref|YP_007280286.1| - 0.052 13.1 0.0 0.095 12.3 0.0 1.4 1 0 0 1 1 1 0 Holliday junction DNA helicase ruvB C-terminus Rrf2 PF02082.15 gi|433590790|ref|YP_007280286.1| - 0.084 13.0 0.0 0.25 11.4 0.0 1.7 2 0 0 2 2 2 0 Transcriptional regulator HTH_23 PF13384.1 gi|433590790|ref|YP_007280286.1| - 0.096 12.3 0.1 0.16 11.6 0.0 1.3 1 0 0 1 1 1 0 Homeodomain-like domain TauE PF01925.14 gi|433590791|ref|YP_007280287.1| - 3.1e-36 125.0 27.0 3.1e-36 125.0 18.7 1.8 1 1 1 2 2 2 1 Sulfite exporter TauE/SafE Usp PF00582.21 gi|433590793|ref|YP_007280289.1| - 8.5e-42 142.6 2.1 9.4e-24 84.1 0.0 2.1 2 0 0 2 2 2 2 Universal stress protein family DUF1641 PF07849.6 gi|433590794|ref|YP_007280290.1| - 5.1e-14 51.5 3.1 8.4e-14 50.9 0.2 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF1641) SNF PF00209.13 gi|433590795|ref|YP_007280291.1| - 1.9e-45 155.3 25.2 7.4e-24 84.0 3.0 2.4 1 1 1 2 2 2 2 Sodium:neurotransmitter symporter family DUF3742 PF12553.3 gi|433590795|ref|YP_007280291.1| - 0.046 14.1 8.0 0.44 11.0 0.1 3.2 3 0 0 3 3 3 0 Protein of unknown function (DUF3742) Cupin_2 PF07883.6 gi|433590796|ref|YP_007280292.1| - 2.1e-10 39.9 0.1 3e-10 39.4 0.1 1.3 1 0 0 1 1 1 1 Cupin domain Cupin_3 PF05899.7 gi|433590796|ref|YP_007280292.1| - 6.9e-06 25.3 0.1 1.3e-05 24.5 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF861) zinc_ribbon_6 PF14599.1 gi|433590796|ref|YP_007280292.1| - 0.0045 16.7 0.2 0.014 15.1 0.1 1.8 1 1 0 1 1 1 1 Zinc-ribbon Zn-ribbon_8 PF09723.5 gi|433590796|ref|YP_007280292.1| - 0.006 16.5 1.9 0.013 15.4 1.3 1.6 1 0 0 1 1 1 1 Zinc ribbon domain Cupin_1 PF00190.17 gi|433590796|ref|YP_007280292.1| - 0.009 15.4 0.0 0.012 15.0 0.0 1.2 1 0 0 1 1 1 1 Cupin zinc_ribbon_2 PF13240.1 gi|433590796|ref|YP_007280292.1| - 0.1 12.0 1.8 0.41 10.2 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Terminase_GpA PF05876.7 gi|433590796|ref|YP_007280292.1| - 0.13 10.5 0.1 0.19 10.0 0.1 1.2 1 0 0 1 1 1 0 Phage terminase large subunit (GpA) zf-ribbon_3 PF13248.1 gi|433590796|ref|YP_007280292.1| - 0.21 10.8 3.2 1.8 7.9 2.3 2.2 1 1 0 1 1 1 0 zinc-ribbon domain zf-NADH-PPase PF09297.6 gi|433590796|ref|YP_007280292.1| - 0.3 10.6 0.1 0.3 10.6 0.1 2.3 3 0 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain zf-Mss51 PF13824.1 gi|433590796|ref|YP_007280292.1| - 0.4 10.5 2.7 30 4.5 1.9 2.3 1 1 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 PHO4 PF01384.15 gi|433590797|ref|YP_007280293.1| - 8.1e-39 133.1 34.5 8.1e-39 133.1 23.9 1.7 1 1 0 1 1 1 1 Phosphate transporter family FLgD_tudor PF13861.1 gi|433590797|ref|YP_007280293.1| - 3.7 7.6 6.1 0.84 9.6 0.2 2.8 3 0 0 3 3 3 0 FlgD Tudor-like domain Sulf_transp PF04143.9 gi|433590798|ref|YP_007280294.1| - 2e-10 40.5 10.1 2e-10 40.5 7.0 2.9 3 0 0 3 3 3 2 Sulphur transport QCR10 PF09796.4 gi|433590798|ref|YP_007280294.1| - 0.17 11.5 0.2 0.17 11.5 0.1 2.2 2 1 0 2 2 2 0 Ubiquinol-cytochrome-c reductase complex subunit (QCR10) DUF204 PF02659.10 gi|433590798|ref|YP_007280294.1| - 1.6 8.9 11.2 0.2 11.8 2.3 2.6 2 1 0 2 2 2 0 Domain of unknown function DUF Sugar_tr PF00083.19 gi|433590798|ref|YP_007280294.1| - 4.8 5.6 8.9 3 6.2 0.4 2.0 2 0 0 2 2 2 0 Sugar (and other) transporter DUF4341 PF14241.1 gi|433590799|ref|YP_007280295.1| - 2.3e-14 52.8 7.4 2.9e-13 49.2 2.3 2.5 2 0 0 2 2 2 2 Domain of unknown function (DUF4341) Sulf_transp PF04143.9 gi|433590799|ref|YP_007280295.1| - 1.7e-10 40.7 7.1 1.7e-10 40.7 4.9 3.1 3 0 0 3 3 3 2 Sulphur transport UCR_UQCRX_QCR9 PF05365.7 gi|433590799|ref|YP_007280295.1| - 0.024 14.2 0.1 0.024 14.2 0.0 1.8 2 0 0 2 2 2 0 Ubiquinol-cytochrome C reductase, UQCRX/QCR9 like Lactamase_B PF00753.22 gi|433590800|ref|YP_007280296.1| - 2.9e-17 62.9 6.4 4.8e-17 62.2 4.5 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Rhodanese PF00581.15 gi|433590800|ref|YP_007280296.1| - 4e-11 43.2 0.0 7.7e-11 42.3 0.0 1.4 1 0 0 1 1 1 1 Rhodanese-like domain Lactamase_B_2 PF12706.2 gi|433590800|ref|YP_007280296.1| - 0.0047 16.4 0.1 0.012 15.1 0.1 1.7 1 1 0 1 1 1 1 Beta-lactamase superfamily domain TusA PF01206.12 gi|433590801|ref|YP_007280297.1| - 3.3e-19 68.2 0.0 3.7e-19 68.0 0.0 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA DUF2249 PF10006.4 gi|433590801|ref|YP_007280297.1| - 0.078 12.5 0.0 0.14 11.7 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2249) DrsE_2 PF13686.1 gi|433590802|ref|YP_007280298.1| - 2.2e-53 180.0 0.7 2.7e-53 179.7 0.5 1.1 1 0 0 1 1 1 1 DsrE/DsrF/DrsH-like family DrsE PF02635.10 gi|433590802|ref|YP_007280298.1| - 2.9e-05 24.1 0.1 0.0004 20.4 0.1 2.2 1 1 0 1 1 1 1 DsrE/DsrF-like family Packaging_FI PF14000.1 gi|433590802|ref|YP_007280298.1| - 0.03 14.5 0.1 0.046 13.9 0.0 1.4 1 0 0 1 1 1 0 DNA packaging protein FI Dynamitin PF04912.9 gi|433590802|ref|YP_007280298.1| - 0.035 12.9 0.1 0.06 12.1 0.0 1.3 1 0 0 1 1 1 0 Dynamitin IncA PF04156.9 gi|433590804|ref|YP_007280300.1| - 0.011 15.3 0.2 0.011 15.3 0.1 1.9 2 0 0 2 2 2 0 IncA protein TcpE PF12648.2 gi|433590804|ref|YP_007280300.1| - 0.2 11.7 0.7 0.53 10.4 0.0 1.8 2 0 0 2 2 2 0 TcpE family Herpes_gI PF01688.12 gi|433590804|ref|YP_007280300.1| - 1.9 7.5 5.1 12 5.0 0.0 2.1 1 1 1 2 2 2 0 Alphaherpesvirus glycoprotein I DUF4231 PF14015.1 gi|433590804|ref|YP_007280300.1| - 2 8.4 6.1 0.17 11.8 0.3 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF4231) eRF1_1 PF03463.10 gi|433590805|ref|YP_007280301.1| - 4.1e-31 107.2 0.3 8.1e-31 106.3 0.2 1.5 1 0 0 1 1 1 1 eRF1 domain 1 eRF1_3 PF03465.10 gi|433590805|ref|YP_007280301.1| - 3.5e-23 82.0 0.2 1.5e-22 79.9 0.0 2.2 3 0 0 3 3 3 1 eRF1 domain 3 eRF1_2 PF03464.10 gi|433590805|ref|YP_007280301.1| - 5.1e-22 78.6 0.3 8.7e-22 77.8 0.2 1.4 1 0 0 1 1 1 1 eRF1 domain 2 TrmB PF01978.14 gi|433590806|ref|YP_007280302.1| - 7.6e-21 73.5 0.0 1.3e-20 72.8 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|433590806|ref|YP_007280302.1| - 0.00013 21.5 0.0 0.00027 20.5 0.0 1.5 1 0 0 1 1 1 1 MarR family Regulator_TrmB PF11495.3 gi|433590806|ref|YP_007280302.1| - 0.00026 20.0 0.1 0.00032 19.7 0.0 1.2 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB DUF2250 PF10007.4 gi|433590806|ref|YP_007280302.1| - 0.0003 20.6 0.0 0.00047 20.0 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_IclR PF09339.5 gi|433590806|ref|YP_007280302.1| - 0.00041 19.8 0.0 0.00093 18.7 0.0 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain Penicillinase_R PF03965.11 gi|433590806|ref|YP_007280302.1| - 0.0014 18.6 0.2 0.0037 17.3 0.0 1.9 2 1 0 2 2 2 1 Penicillinase repressor HTH_27 PF13463.1 gi|433590806|ref|YP_007280302.1| - 0.018 15.3 0.0 0.056 13.7 0.0 1.9 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_20 PF12840.2 gi|433590806|ref|YP_007280302.1| - 0.019 14.7 0.0 0.043 13.6 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_29 PF13551.1 gi|433590806|ref|YP_007280302.1| - 0.054 13.6 0.2 0.19 11.8 0.1 2.0 1 1 1 2 2 2 0 Winged helix-turn helix MMPL PF03176.10 gi|433590807|ref|YP_007280303.1| - 5.7e-30 104.1 38.9 5.6e-20 71.3 5.3 3.6 3 1 0 3 3 3 2 MMPL family Sterol-sensing PF12349.3 gi|433590807|ref|YP_007280303.1| - 8.1e-06 25.3 15.6 0.0044 16.4 3.0 2.5 2 0 0 2 2 2 2 Sterol-sensing domain of SREBP cleavage-activation SecD_SecF PF02355.11 gi|433590807|ref|YP_007280303.1| - 9.3e-05 21.7 7.5 9.3e-05 21.7 5.2 2.6 2 0 0 2 2 2 1 Protein export membrane protein Patched PF02460.13 gi|433590807|ref|YP_007280303.1| - 0.00014 19.9 29.5 0.0011 16.9 3.2 3.2 3 0 0 3 3 3 3 Patched family DUF3742 PF12553.3 gi|433590807|ref|YP_007280303.1| - 1.9 8.9 11.9 14 6.2 0.0 5.0 4 0 0 4 4 4 0 Protein of unknown function (DUF3742) Lactamase_B_2 PF12706.2 gi|433590808|ref|YP_007280304.1| - 3.2e-15 56.2 0.0 3.8e-15 55.9 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|433590808|ref|YP_007280304.1| - 2e-12 47.1 1.8 3.8e-12 46.2 1.3 1.6 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.1 gi|433590808|ref|YP_007280304.1| - 0.0018 18.0 0.0 0.0025 17.5 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain TraW_N PF12477.3 gi|433590810|ref|YP_007280306.1| - 0.09 12.7 0.5 0.23 11.4 0.4 1.7 1 0 0 1 1 1 0 Sex factor F TraW protein N terminal HTH_20 PF12840.2 gi|433590811|ref|YP_007280307.1| - 0.0015 18.2 1.9 0.0035 17.1 1.3 1.6 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_42 PF06224.7 gi|433590811|ref|YP_007280307.1| - 0.006 15.9 0.5 0.0067 15.7 0.3 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_AsnC-type PF13404.1 gi|433590811|ref|YP_007280307.1| - 0.023 14.1 0.6 0.048 13.2 0.4 1.5 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_24 PF13412.1 gi|433590811|ref|YP_007280307.1| - 0.05 13.0 0.0 0.14 11.5 0.0 1.7 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding TAXi_C PF14541.1 gi|433590811|ref|YP_007280307.1| - 0.14 11.7 0.0 0.16 11.5 0.0 1.2 1 0 0 1 1 1 0 Xylanase inhibitor C-terminal Hexapep PF00132.19 gi|433590812|ref|YP_007280308.1| - 2.1e-09 36.4 0.8 2.1e-09 36.4 0.5 3.1 3 0 0 3 3 3 1 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|433590812|ref|YP_007280308.1| - 6.3e-07 28.8 1.1 6.3e-07 28.8 0.8 2.8 3 0 0 3 3 3 1 Hexapeptide repeat of succinyl-transferase Pyr_redox_2 PF07992.9 gi|433590813|ref|YP_007280309.1| - 3.6e-17 62.9 0.0 6.3e-17 62.1 0.0 1.5 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|433590813|ref|YP_007280309.1| - 4.2e-10 39.8 1.5 1.2e-08 35.2 0.0 2.8 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|433590813|ref|YP_007280309.1| - 5.5e-07 29.8 1.3 0.02 14.9 0.0 3.4 2 1 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.1 gi|433590813|ref|YP_007280309.1| - 0.0019 17.9 2.4 1.2 8.9 0.0 3.1 3 0 0 3 3 3 2 FAD-NAD(P)-binding AlaDh_PNT_C PF01262.16 gi|433590813|ref|YP_007280309.1| - 0.011 15.3 1.0 3 7.3 0.2 2.5 3 0 0 3 3 3 0 Alanine dehydrogenase/PNT, C-terminal domain Spore_SspJ PF09575.5 gi|433590813|ref|YP_007280309.1| - 0.48 10.6 4.0 0.51 10.5 0.1 2.7 3 0 0 3 3 3 0 Small spore protein J (Spore_SspJ) GIDA PF01134.17 gi|433590813|ref|YP_007280309.1| - 0.95 8.2 3.8 10 4.8 0.0 2.9 3 0 0 3 3 3 0 Glucose inhibited division protein A Arginase PF00491.16 gi|433590814|ref|YP_007280310.1| - 1e-78 264.4 2.1 1.2e-78 264.2 1.4 1.0 1 0 0 1 1 1 1 Arginase family Fe_dep_repr_C PF02742.10 gi|433590815|ref|YP_007280311.1| - 1.5e-28 98.2 0.9 3.1e-28 97.2 0.6 1.6 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain Fe_dep_repress PF01325.14 gi|433590815|ref|YP_007280311.1| - 9.8e-19 67.0 2.1 1.1e-18 66.9 0.4 1.8 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain FeoA PF04023.9 gi|433590815|ref|YP_007280311.1| - 1.4e-10 40.9 0.7 5.9e-10 38.9 0.1 2.1 2 0 0 2 2 2 1 FeoA domain MarR PF01047.17 gi|433590815|ref|YP_007280311.1| - 3.1e-08 33.2 0.0 6.9e-08 32.0 0.0 1.5 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.2 gi|433590815|ref|YP_007280311.1| - 9.9e-08 31.5 0.3 5e-07 29.2 0.0 2.2 3 0 0 3 3 3 1 MarR family HTH_27 PF13463.1 gi|433590815|ref|YP_007280311.1| - 4.6e-07 30.0 0.4 2.4e-06 27.7 0.3 2.2 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_24 PF13412.1 gi|433590815|ref|YP_007280311.1| - 0.00011 21.4 0.0 0.00023 20.4 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|433590815|ref|YP_007280311.1| - 0.00043 19.9 0.1 0.00093 18.8 0.1 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.1 gi|433590815|ref|YP_007280311.1| - 0.00059 19.5 0.0 0.0011 18.6 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_1 PF00126.22 gi|433590815|ref|YP_007280311.1| - 0.00094 18.8 0.0 0.0024 17.5 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family GntR PF00392.16 gi|433590815|ref|YP_007280311.1| - 0.0013 18.0 0.0 0.0035 16.7 0.0 1.8 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_13 PF11972.3 gi|433590815|ref|YP_007280311.1| - 0.0016 18.2 0.1 0.0032 17.2 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain Rrf2 PF02082.15 gi|433590815|ref|YP_007280311.1| - 0.0022 18.0 0.1 0.0061 16.6 0.0 1.8 2 0 0 2 2 2 1 Transcriptional regulator HTH_IclR PF09339.5 gi|433590815|ref|YP_007280311.1| - 0.0038 16.7 0.0 0.012 15.1 0.0 2.0 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_20 PF12840.2 gi|433590815|ref|YP_007280311.1| - 0.0044 16.8 0.8 0.019 14.7 0.0 2.4 3 0 0 3 3 2 1 Helix-turn-helix domain HxlR PF01638.12 gi|433590815|ref|YP_007280311.1| - 0.0044 16.6 0.2 0.0082 15.7 0.1 1.5 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_12 PF08461.5 gi|433590815|ref|YP_007280311.1| - 0.007 16.0 0.1 0.02 14.6 0.1 1.8 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain HrcA_DNA-bdg PF03444.10 gi|433590815|ref|YP_007280311.1| - 0.014 14.8 0.0 0.025 14.0 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Penicillinase_R PF03965.11 gi|433590815|ref|YP_007280311.1| - 0.015 15.3 0.1 0.032 14.3 0.0 1.6 1 0 0 1 1 1 0 Penicillinase repressor Topoisom_bac PF01131.15 gi|433590815|ref|YP_007280311.1| - 0.016 14.0 0.0 0.022 13.5 0.0 1.1 1 0 0 1 1 1 0 DNA topoisomerase HTH_5 PF01022.15 gi|433590815|ref|YP_007280311.1| - 0.025 14.2 0.1 0.11 12.1 0.0 2.1 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family HTH_45 PF14947.1 gi|433590815|ref|YP_007280311.1| - 0.048 13.4 0.1 0.076 12.8 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_23 PF13384.1 gi|433590815|ref|YP_007280311.1| - 0.049 13.2 0.0 0.17 11.6 0.0 2.0 1 1 1 2 2 2 0 Homeodomain-like domain HTH_11 PF08279.7 gi|433590815|ref|YP_007280311.1| - 0.083 12.5 0.1 0.15 11.7 0.1 1.4 1 0 0 1 1 1 0 HTH domain DUF2250 PF10007.4 gi|433590815|ref|YP_007280311.1| - 0.096 12.6 0.1 0.18 11.7 0.1 1.6 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) FeoC PF09012.5 gi|433590815|ref|YP_007280311.1| - 0.13 12.0 0.0 0.26 11.0 0.0 1.5 1 0 0 1 1 1 0 FeoC like transcriptional regulator HrcA_DNA-bdg PF03444.10 gi|433590816|ref|YP_007280312.1| - 5.6e-37 125.0 0.1 8.5e-37 124.4 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Rrf2 PF02082.15 gi|433590816|ref|YP_007280312.1| - 5.8e-09 35.9 0.0 1.1e-08 35.1 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator HTH_11 PF08279.7 gi|433590816|ref|YP_007280312.1| - 1.6e-06 27.6 0.0 2.7e-06 26.9 0.0 1.4 1 0 0 1 1 1 1 HTH domain Put_DNA-bind_N PF06971.8 gi|433590816|ref|YP_007280312.1| - 0.011 15.5 0.0 0.018 14.7 0.0 1.4 1 0 0 1 1 1 0 Putative DNA-binding protein N-terminus TrmB PF01978.14 gi|433590816|ref|YP_007280312.1| - 0.015 15.0 0.0 0.029 14.0 0.0 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|433590816|ref|YP_007280312.1| - 0.017 14.8 0.0 0.036 13.8 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_24 PF13412.1 gi|433590816|ref|YP_007280312.1| - 0.022 14.1 0.3 0.049 13.0 0.2 1.6 1 1 0 1 1 1 0 Winged helix-turn-helix DNA-binding Phage_terminase PF10668.4 gi|433590816|ref|YP_007280312.1| - 0.033 13.9 0.0 0.057 13.2 0.0 1.3 1 0 0 1 1 1 0 Phage terminase small subunit HTH_27 PF13463.1 gi|433590816|ref|YP_007280312.1| - 0.049 13.9 0.0 0.09 13.1 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_38 PF13936.1 gi|433590816|ref|YP_007280312.1| - 0.15 11.6 0.4 0.37 10.3 0.0 1.9 2 1 0 2 2 2 0 Helix-turn-helix domain DNA_topoisoIV PF00521.15 gi|433590817|ref|YP_007280313.1| - 9e-154 512.4 0.0 1.1e-153 512.0 0.0 1.1 1 0 0 1 1 1 1 DNA gyrase/topoisomerase IV, subunit A DNA_gyraseA_C PF03989.8 gi|433590817|ref|YP_007280313.1| - 1.2e-63 210.2 9.8 1.1e-13 50.2 0.1 6.5 6 0 0 6 6 6 6 DNA gyrase C-terminal domain, beta-propeller NYD-SP28 PF14772.1 gi|433590817|ref|YP_007280313.1| - 0.11 12.6 8.5 0.096 12.7 4.4 2.1 1 1 0 1 1 1 0 Sperm tail TerC PF03741.11 gi|433590817|ref|YP_007280313.1| - 0.44 9.9 0.5 0.69 9.3 0.3 1.2 1 0 0 1 1 1 0 Integral membrane protein TerC family DUF745 PF05335.8 gi|433590817|ref|YP_007280313.1| - 1.2 8.5 5.6 2.5 7.5 3.9 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF745) DNA_gyraseB PF00204.20 gi|433590818|ref|YP_007280314.1| - 4e-60 201.9 0.5 8.5e-60 200.9 0.3 1.6 1 0 0 1 1 1 1 DNA gyrase B DNA_gyraseB_C PF00986.16 gi|433590818|ref|YP_007280314.1| - 7.3e-30 102.5 0.0 1.7e-29 101.3 0.0 1.6 1 0 0 1 1 1 1 DNA gyrase B subunit, carboxyl terminus Toprim PF01751.17 gi|433590818|ref|YP_007280314.1| - 2.1e-23 82.1 0.0 5.9e-23 80.7 0.0 1.8 1 0 0 1 1 1 1 Toprim domain HATPase_c PF02518.21 gi|433590818|ref|YP_007280314.1| - 3e-19 68.7 0.1 7e-19 67.5 0.1 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.1 gi|433590818|ref|YP_007280314.1| - 8.5e-05 22.2 0.1 0.00018 21.1 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Proteasome PF00227.21 gi|433590819|ref|YP_007280315.1| - 6.1e-45 152.8 0.0 7.1e-45 152.6 0.0 1.0 1 0 0 1 1 1 1 Proteasome subunit Proteasome PF00227.21 gi|433590820|ref|YP_007280316.1| - 4.8e-56 189.0 0.0 5.9e-56 188.7 0.0 1.1 1 0 0 1 1 1 1 Proteasome subunit Proteasome_A_N PF10584.4 gi|433590820|ref|YP_007280316.1| - 2.3e-14 52.3 0.1 4.3e-14 51.5 0.1 1.5 1 0 0 1 1 1 1 Proteasome subunit A N-terminal signature Nramp PF01566.13 gi|433590821|ref|YP_007280317.1| - 1.3e-32 113.0 30.8 1.3e-32 113.0 21.3 1.6 1 1 1 2 2 2 2 Natural resistance-associated macrophage protein DUF4257 PF14074.1 gi|433590822|ref|YP_007280318.1| - 0.075 12.6 0.2 5 6.8 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF4257) SPW PF03779.9 gi|433590822|ref|YP_007280318.1| - 0.51 9.7 14.6 0.3 10.4 5.7 3.1 2 2 1 3 3 3 0 SPW repeat Lipase_GDSL_2 PF13472.1 gi|433590823|ref|YP_007280319.1| - 0.047 13.8 0.7 0.31 11.1 0.5 2.2 1 1 0 1 1 1 0 GDSL-like Lipase/Acylhydrolase family Ion_trans_2 PF07885.11 gi|433590824|ref|YP_007280320.1| - 0.012 15.2 9.0 0.012 15.2 6.3 1.8 2 0 0 2 2 2 0 Ion channel Pyr_redox_2 PF07992.9 gi|433590825|ref|YP_007280321.1| - 5e-32 111.4 0.4 6.9e-32 110.9 0.2 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|433590825|ref|YP_007280321.1| - 8.8e-26 90.1 0.6 2e-25 88.9 0.0 1.9 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.22 gi|433590825|ref|YP_007280321.1| - 2e-15 56.9 0.1 3.8e-12 46.4 0.0 2.8 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|433590825|ref|YP_007280321.1| - 0.00012 22.1 0.1 0.00047 20.2 0.1 2.0 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase K_oxygenase PF13434.1 gi|433590825|ref|YP_007280321.1| - 0.0016 17.4 0.0 0.0038 16.2 0.0 1.6 2 0 0 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) DrsE PF02635.10 gi|433590826|ref|YP_007280322.1| - 6.9e-06 26.1 0.0 8e-06 25.9 0.0 1.1 1 0 0 1 1 1 1 DsrE/DsrF-like family Topo-VIb_trans PF09239.6 gi|433590827|ref|YP_007280323.1| - 9.3e-66 220.2 0.0 2.1e-65 219.1 0.0 1.6 1 0 0 1 1 1 1 Topoisomerase VI B subunit, transducer HATPase_c PF02518.21 gi|433590827|ref|YP_007280323.1| - 3.2e-16 59.0 0.0 8.8e-16 57.6 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.1 gi|433590827|ref|YP_007280323.1| - 7.1e-14 51.6 0.0 2.2e-13 50.0 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.1 gi|433590827|ref|YP_007280323.1| - 0.00068 19.4 0.0 0.0075 16.0 0.0 2.5 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain Terpene_synth_C PF03936.11 gi|433590827|ref|YP_007280323.1| - 0.11 11.7 0.1 0.6 9.2 0.0 2.1 2 0 0 2 2 2 0 Terpene synthase family, metal binding domain TP6A_N PF04406.9 gi|433590828|ref|YP_007280324.1| - 7.6e-21 73.5 0.1 1.3e-20 72.7 0.1 1.4 1 0 0 1 1 1 1 Type IIB DNA topoisomerase DUF3970 PF13113.1 gi|433590828|ref|YP_007280324.1| - 0.13 11.9 0.0 0.31 10.7 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3970) CopD PF05425.8 gi|433590829|ref|YP_007280325.1| - 0.035 14.2 7.3 0.047 13.8 5.1 1.1 1 0 0 1 1 1 0 Copper resistance protein D Lactamase_B_3 PF13483.1 gi|433590830|ref|YP_007280326.1| - 8.9e-34 116.5 0.0 1.2e-33 116.1 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain FAA_hydrolase PF01557.13 gi|433590831|ref|YP_007280327.1| - 6.2e-65 218.6 0.2 7.7e-65 218.3 0.1 1.0 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family DZR PF12773.2 gi|433590832|ref|YP_007280328.1| - 0.0014 18.4 0.4 0.0019 17.9 0.3 1.2 1 0 0 1 1 1 1 Double zinc ribbon AsnC_trans_reg PF01037.16 gi|433590833|ref|YP_007280329.1| - 2.9e-12 46.0 0.0 5.1e-12 45.3 0.0 1.4 1 0 0 1 1 1 1 AsnC family HTH_24 PF13412.1 gi|433590833|ref|YP_007280329.1| - 7e-11 41.3 0.2 2.5e-10 39.5 0.0 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|433590833|ref|YP_007280329.1| - 2.8e-07 30.0 0.7 5.3e-07 29.2 0.1 1.8 2 1 1 3 3 1 1 Bacterial regulatory protein, arsR family HTH_11 PF08279.7 gi|433590833|ref|YP_007280329.1| - 1.4e-06 27.7 0.1 5e-06 26.0 0.0 1.8 2 0 0 2 2 2 1 HTH domain HTH_20 PF12840.2 gi|433590833|ref|YP_007280329.1| - 2.2e-06 27.3 0.0 4.4e-06 26.4 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AsnC-type PF13404.1 gi|433590833|ref|YP_007280329.1| - 9.3e-06 25.0 0.2 1.5e-05 24.4 0.1 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain TrmB PF01978.14 gi|433590833|ref|YP_007280329.1| - 6.3e-05 22.6 0.0 0.00012 21.6 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_DeoR PF08220.7 gi|433590833|ref|YP_007280329.1| - 0.0001 21.7 0.2 0.00078 18.9 0.1 2.1 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain HTH_28 PF13518.1 gi|433590833|ref|YP_007280329.1| - 0.00014 21.7 0.0 0.00045 20.1 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain GntR PF00392.16 gi|433590833|ref|YP_007280329.1| - 0.00018 20.8 0.0 0.00042 19.6 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family MarR_2 PF12802.2 gi|433590833|ref|YP_007280329.1| - 0.001 18.7 0.0 0.0019 17.7 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_23 PF13384.1 gi|433590833|ref|YP_007280329.1| - 0.0027 17.3 0.0 0.005 16.4 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain HTH_10 PF04967.7 gi|433590833|ref|YP_007280329.1| - 0.003 17.1 0.0 0.0057 16.2 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain MarR PF01047.17 gi|433590833|ref|YP_007280329.1| - 0.0032 17.1 0.0 0.0062 16.2 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|433590833|ref|YP_007280329.1| - 0.0035 16.8 0.0 0.0069 15.9 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_7 PF02796.10 gi|433590833|ref|YP_007280329.1| - 0.0036 17.1 0.0 0.0099 15.7 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase HTH_41 PF14502.1 gi|433590833|ref|YP_007280329.1| - 0.0051 16.4 0.0 0.02 14.5 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain Fe_dep_repress PF01325.14 gi|433590833|ref|YP_007280329.1| - 0.011 15.6 0.0 0.021 14.7 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_Crp_2 PF13545.1 gi|433590833|ref|YP_007280329.1| - 0.012 15.3 0.0 0.019 14.7 0.0 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_38 PF13936.1 gi|433590833|ref|YP_007280329.1| - 0.02 14.4 0.0 0.039 13.5 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_29 PF13551.1 gi|433590833|ref|YP_007280329.1| - 0.025 14.7 0.0 0.085 13.0 0.0 1.8 3 0 0 3 3 1 0 Winged helix-turn helix GerE PF00196.14 gi|433590833|ref|YP_007280329.1| - 0.033 13.5 0.0 0.26 10.6 0.0 2.0 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family HTH_40 PF14493.1 gi|433590833|ref|YP_007280329.1| - 0.046 13.9 0.1 0.12 12.6 0.0 1.8 2 1 0 2 2 1 0 Helix-turn-helix domain HTH_36 PF13730.1 gi|433590833|ref|YP_007280329.1| - 0.046 13.8 0.0 0.083 13.0 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain DUF4250 PF14056.1 gi|433590833|ref|YP_007280329.1| - 0.048 13.3 0.3 0.13 12.0 0.2 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4250) Mga PF05043.8 gi|433590833|ref|YP_007280329.1| - 0.052 13.8 0.0 0.14 12.4 0.0 1.7 1 0 0 1 1 1 0 Mga helix-turn-helix domain DUF2042 PF09743.4 gi|433590833|ref|YP_007280329.1| - 0.053 12.8 0.0 0.13 11.5 0.0 1.6 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2042) DUF742 PF05331.6 gi|433590833|ref|YP_007280329.1| - 0.053 13.1 0.0 0.23 11.0 0.0 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF742) Rrf2 PF02082.15 gi|433590833|ref|YP_007280329.1| - 0.067 13.3 0.0 0.19 11.8 0.0 1.7 1 0 0 1 1 1 0 Transcriptional regulator Sigma70_r4_2 PF08281.7 gi|433590833|ref|YP_007280329.1| - 0.069 12.6 0.0 0.12 11.8 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_1 PF00126.22 gi|433590833|ref|YP_007280329.1| - 0.12 12.1 0.0 0.22 11.2 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family TAT_signal PF10518.4 gi|433590834|ref|YP_007280330.1| - 0.033 14.1 1.4 0.033 14.1 1.0 2.9 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence UCR_Fe-S_N PF10399.4 gi|433590834|ref|YP_007280330.1| - 0.13 11.4 1.4 0.23 10.6 0.1 2.0 2 0 0 2 2 2 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal PQQ_2 PF13360.1 gi|433590835|ref|YP_007280331.1| - 1.2e-16 60.9 0.8 7.7e-08 32.0 0.0 4.2 3 1 1 4 4 4 3 PQQ-like domain PQQ PF01011.16 gi|433590835|ref|YP_007280331.1| - 2e-15 55.4 18.3 2.7e-05 23.4 0.0 6.8 7 0 0 7 7 7 5 PQQ enzyme repeat PQQ_3 PF13570.1 gi|433590835|ref|YP_007280331.1| - 0.00028 21.0 15.4 0.48 10.7 0.3 6.1 7 0 0 7 7 7 3 PQQ-like domain GSDH PF07995.6 gi|433590836|ref|YP_007280332.1| - 4.5e-29 101.5 0.6 1.2e-14 54.1 0.4 2.3 2 0 0 2 2 2 2 Glucose / Sorbosone dehydrogenase Copper-bind PF00127.15 gi|433590836|ref|YP_007280332.1| - 1.4e-08 34.8 0.0 2.9e-08 33.8 0.0 1.5 1 0 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.1 gi|433590836|ref|YP_007280332.1| - 0.00023 21.0 0.0 0.00042 20.1 0.0 1.3 1 0 0 1 1 1 1 Cupredoxin-like domain TAT_signal PF10518.4 gi|433590836|ref|YP_007280332.1| - 0.076 13.0 3.9 0.16 12.0 2.7 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Na_Ca_ex PF01699.19 gi|433590837|ref|YP_007280333.1| - 5.9e-22 77.7 28.0 1.1e-16 60.7 5.5 2.2 2 0 0 2 2 2 2 Sodium/calcium exchanger protein Na_Ca_ex PF01699.19 gi|433590838|ref|YP_007280334.1| - 1.9e-16 59.9 28.6 3.6e-13 49.3 5.7 2.3 2 0 0 2 2 2 2 Sodium/calcium exchanger protein HTH_20 PF12840.2 gi|433590839|ref|YP_007280335.1| - 1.3e-15 56.9 0.3 1.8e-15 56.4 0.2 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|433590839|ref|YP_007280335.1| - 1.3e-14 53.6 0.0 2e-14 52.9 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.5 gi|433590839|ref|YP_007280335.1| - 1.7e-08 33.9 1.6 6.6e-08 32.0 1.1 1.9 1 1 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|433590839|ref|YP_007280335.1| - 1.5e-07 30.9 0.1 2.7e-07 30.1 0.0 1.4 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|433590839|ref|YP_007280335.1| - 4.9e-06 26.1 0.0 6.8e-06 25.7 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|433590839|ref|YP_007280335.1| - 1.4e-05 24.3 0.0 2.2e-05 23.7 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|433590839|ref|YP_007280335.1| - 1.7e-05 24.3 0.1 2.3e-05 23.9 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.1 gi|433590839|ref|YP_007280335.1| - 0.00015 22.0 0.0 0.00022 21.4 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain PadR PF03551.9 gi|433590839|ref|YP_007280335.1| - 0.00092 18.9 0.4 0.0025 17.5 0.3 1.7 1 1 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_11 PF08279.7 gi|433590839|ref|YP_007280335.1| - 0.0011 18.5 0.0 0.0015 18.0 0.0 1.3 1 0 0 1 1 1 1 HTH domain Rrf2 PF02082.15 gi|433590839|ref|YP_007280335.1| - 0.0016 18.5 0.1 0.0021 18.1 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator HTH_34 PF13601.1 gi|433590839|ref|YP_007280335.1| - 0.0036 17.3 0.0 0.0046 16.9 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain PaaX PF07848.7 gi|433590839|ref|YP_007280335.1| - 0.019 14.9 0.1 0.029 14.3 0.1 1.3 1 0 0 1 1 1 0 PaaX-like protein DUF2250 PF10007.4 gi|433590839|ref|YP_007280335.1| - 0.034 14.0 0.1 0.056 13.3 0.1 1.4 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) FaeA PF04703.7 gi|433590839|ref|YP_007280335.1| - 0.039 14.0 0.1 0.055 13.6 0.1 1.2 1 0 0 1 1 1 0 FaeA-like protein Sulfolobus_pRN PF05584.6 gi|433590839|ref|YP_007280335.1| - 0.058 13.3 0.1 0.08 12.9 0.0 1.3 1 0 0 1 1 1 0 Sulfolobus plasmid regulatory protein HTH_29 PF13551.1 gi|433590839|ref|YP_007280335.1| - 0.059 13.5 0.1 0.07 13.2 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn helix Fe_dep_repress PF01325.14 gi|433590839|ref|YP_007280335.1| - 0.063 13.2 0.0 0.091 12.7 0.0 1.3 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain ArsR PF09824.4 gi|433590839|ref|YP_007280335.1| - 0.14 11.4 0.0 0.17 11.2 0.0 1.1 1 0 0 1 1 1 0 ArsR transcriptional regulator NMT1 PF09084.6 gi|433590841|ref|YP_007280337.1| - 1.2e-21 77.3 0.0 1.6e-21 76.8 0.0 1.2 1 0 0 1 1 1 1 NMT1/THI5 like Phosphonate-bd PF12974.2 gi|433590841|ref|YP_007280337.1| - 0.00019 20.8 0.1 0.00043 19.7 0.1 1.5 1 1 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein MarR_2 PF12802.2 gi|433590841|ref|YP_007280337.1| - 0.00062 19.3 0.4 0.0024 17.5 0.3 2.0 1 1 0 1 1 1 1 MarR family OpuAC PF04069.7 gi|433590841|ref|YP_007280337.1| - 0.06 12.6 0.0 0.1 11.9 0.0 1.3 1 0 0 1 1 1 0 Substrate binding domain of ABC-type glycine betaine transport system MOSC PF03473.12 gi|433590843|ref|YP_007280339.1| - 1.9e-20 72.6 0.0 3e-20 72.0 0.0 1.3 1 0 0 1 1 1 1 MOSC domain MOSC_N PF03476.11 gi|433590843|ref|YP_007280339.1| - 2.7e-16 59.3 0.0 9.4e-16 57.6 0.0 1.8 1 1 0 1 1 1 1 MOSC N-terminal beta barrel domain ThiS PF02597.15 gi|433590844|ref|YP_007280340.1| - 0.0067 16.8 0.0 0.012 16.0 0.0 1.3 1 0 0 1 1 1 1 ThiS family HTH_20 PF12840.2 gi|433590845|ref|YP_007280341.1| - 5.2e-07 29.3 1.0 1.6e-06 27.8 0.4 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_27 PF13463.1 gi|433590845|ref|YP_007280341.1| - 9.9e-06 25.7 0.8 2.7e-05 24.3 0.1 2.1 2 0 0 2 2 2 1 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|433590845|ref|YP_007280341.1| - 8.1e-05 22.2 1.0 0.00022 20.8 0.7 1.7 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|433590845|ref|YP_007280341.1| - 0.00045 19.5 0.1 0.00071 18.9 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.1 gi|433590845|ref|YP_007280341.1| - 0.00048 19.8 0.2 0.00091 18.9 0.1 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain MarR PF01047.17 gi|433590845|ref|YP_007280341.1| - 0.0008 19.0 0.0 0.0017 18.0 0.0 1.5 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|433590845|ref|YP_007280341.1| - 0.0021 17.7 0.1 0.0049 16.5 0.1 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_45 PF14947.1 gi|433590845|ref|YP_007280341.1| - 0.0035 17.1 0.0 0.0056 16.4 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_5 PF01022.15 gi|433590845|ref|YP_007280341.1| - 0.0048 16.5 0.2 0.0092 15.6 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family GntR PF00392.16 gi|433590845|ref|YP_007280341.1| - 0.0095 15.3 1.2 0.03 13.7 0.8 1.9 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family RP-C PF03428.8 gi|433590845|ref|YP_007280341.1| - 0.029 13.8 0.1 0.051 13.0 0.1 1.3 1 0 0 1 1 1 0 Replication protein C N-terminal domain TFIIE_alpha PF02002.12 gi|433590845|ref|YP_007280341.1| - 0.049 13.1 0.1 0.11 12.0 0.0 1.5 2 0 0 2 2 1 0 TFIIE alpha subunit HemN_C PF06969.11 gi|433590845|ref|YP_007280341.1| - 0.083 12.9 0.2 2.4 8.2 0.0 2.9 2 1 1 3 3 3 0 HemN C-terminal domain HTH_DeoR PF08220.7 gi|433590845|ref|YP_007280341.1| - 0.1 12.1 0.3 0.2 11.2 0.2 1.4 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain Ftsk_gamma PF09397.5 gi|433590845|ref|YP_007280341.1| - 0.13 12.0 0.2 2.1 8.0 0.0 2.3 2 0 0 2 2 2 0 Ftsk gamma domain Zn-ribbon_8 PF09723.5 gi|433590846|ref|YP_007280342.1| - 0.024 14.5 0.6 0.27 11.2 0.0 2.1 2 0 0 2 2 2 0 Zinc ribbon domain DUF2749 PF10907.3 gi|433590847|ref|YP_007280343.1| - 3.5 7.5 5.0 0.66 9.8 0.9 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF2749) DDE_Tnp_IS240 PF13610.1 gi|433590848|ref|YP_007280344.1| - 6.9e-17 61.7 0.2 9.4e-17 61.2 0.1 1.2 1 0 0 1 1 1 1 DDE domain rve PF00665.21 gi|433590848|ref|YP_007280344.1| - 6.1e-05 23.1 0.4 0.00012 22.1 0.3 1.5 1 0 0 1 1 1 1 Integrase core domain DDE_3 PF13358.1 gi|433590848|ref|YP_007280344.1| - 0.00037 20.2 0.0 0.0025 17.5 0.0 2.2 1 1 1 2 2 2 1 DDE superfamily endonuclease DDE_Tnp_IS66 PF03050.9 gi|433590848|ref|YP_007280344.1| - 0.00064 19.0 0.4 0.0011 18.2 0.1 1.5 1 1 0 1 1 1 1 Transposase IS66 family UPF0158 PF03682.8 gi|433590848|ref|YP_007280344.1| - 0.025 14.1 0.1 0.32 10.6 0.0 2.1 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0158) DDE_Tnp_4 PF13359.1 gi|433590848|ref|YP_007280344.1| - 0.057 13.0 0.0 0.079 12.5 0.0 1.2 1 0 0 1 1 1 0 DDE superfamily endonuclease TMEM71 PF15121.1 gi|433590848|ref|YP_007280344.1| - 0.1 12.3 0.4 0.22 11.2 0.3 1.5 1 0 0 1 1 1 0 TMEM71 protein family UbiA PF01040.13 gi|433590849|ref|YP_007280345.1| - 8.7e-30 103.7 21.7 1.1e-29 103.4 15.0 1.2 1 0 0 1 1 1 1 UbiA prenyltransferase family RskA PF10099.4 gi|433590849|ref|YP_007280345.1| - 0.0051 16.5 2.5 0.79 9.4 0.2 2.5 2 0 0 2 2 2 2 Anti-sigma-K factor rskA DUF624 PF04854.9 gi|433590849|ref|YP_007280345.1| - 0.02 14.7 0.7 0.02 14.7 0.5 2.6 2 1 0 2 2 2 0 Protein of unknown function, DUF624 ATP-grasp_2 PF08442.5 gi|433590850|ref|YP_007280346.1| - 5.2e-62 208.8 0.6 8.1e-62 208.1 0.4 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_5 PF13549.1 gi|433590850|ref|YP_007280346.1| - 4.5e-20 71.8 4.5 6.3e-19 68.0 2.7 2.6 2 1 0 2 2 2 1 ATP-grasp domain CPSase_L_D2 PF02786.12 gi|433590850|ref|YP_007280346.1| - 4.8e-13 48.8 0.7 1.1e-10 41.1 0.2 2.3 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain Ligase_CoA PF00549.14 gi|433590850|ref|YP_007280346.1| - 2e-12 46.9 0.3 5.5e-12 45.5 0.2 1.7 1 0 0 1 1 1 1 CoA-ligase ATP-grasp_4 PF13535.1 gi|433590850|ref|YP_007280346.1| - 5.1e-10 39.3 0.6 2e-09 37.4 0.1 2.1 2 0 0 2 2 2 1 ATP-grasp domain ATP-grasp PF02222.17 gi|433590850|ref|YP_007280346.1| - 2.8e-07 30.0 0.1 5.5e-07 29.0 0.1 1.5 1 0 0 1 1 1 1 ATP-grasp domain GARS_A PF01071.14 gi|433590850|ref|YP_007280346.1| - 2.7e-06 27.0 0.2 5.7e-06 26.0 0.2 1.5 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain RimK PF08443.6 gi|433590850|ref|YP_007280346.1| - 0.0059 16.1 0.0 0.014 14.8 0.0 1.6 2 0 0 2 2 2 1 RimK-like ATP-grasp domain CoA_binding PF02629.14 gi|433590851|ref|YP_007280347.1| - 5.4e-24 84.5 2.4 1.2e-23 83.4 0.4 2.2 2 0 0 2 2 2 1 CoA binding domain Ligase_CoA PF00549.14 gi|433590851|ref|YP_007280347.1| - 7.6e-14 51.5 0.7 1.7e-13 50.4 0.5 1.5 1 0 0 1 1 1 1 CoA-ligase Succ_CoA_lig PF13607.1 gi|433590851|ref|YP_007280347.1| - 2.9e-10 39.8 0.0 5e-10 39.1 0.0 1.4 1 0 0 1 1 1 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.1 gi|433590851|ref|YP_007280347.1| - 1.7e-06 28.1 0.0 4.9e-05 23.4 0.0 2.2 2 0 0 2 2 2 1 CoA binding domain IlvN PF07991.7 gi|433590851|ref|YP_007280347.1| - 0.0094 15.3 0.0 0.016 14.5 0.0 1.3 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain GFO_IDH_MocA PF01408.17 gi|433590851|ref|YP_007280347.1| - 0.044 14.3 0.2 0.16 12.4 0.1 1.9 2 0 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold HypA PF01155.14 gi|433590852|ref|YP_007280348.1| - 0.0006 19.4 0.1 0.00065 19.3 0.1 1.0 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family zinc_ribbon_5 PF13719.1 gi|433590852|ref|YP_007280348.1| - 0.00086 18.8 0.8 0.0016 17.9 0.5 1.5 1 1 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|433590852|ref|YP_007280348.1| - 0.0013 18.4 0.7 0.0024 17.4 0.5 1.5 1 1 0 1 1 1 1 zinc-ribbon domain Lar_restr_allev PF14354.1 gi|433590852|ref|YP_007280348.1| - 0.0025 18.1 1.0 1.7 8.9 0.1 2.0 1 1 1 2 2 2 2 Restriction alleviation protein Lar DNA_RNApol_7kD PF03604.8 gi|433590852|ref|YP_007280348.1| - 0.019 14.3 1.6 0.044 13.2 1.1 1.6 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit zf-NADH-PPase PF09297.6 gi|433590852|ref|YP_007280348.1| - 0.033 13.7 2.8 0.15 11.5 0.2 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain DZR PF12773.2 gi|433590852|ref|YP_007280348.1| - 0.042 13.6 0.9 0.072 12.9 0.7 1.4 1 1 0 1 1 1 0 Double zinc ribbon Zn_Tnp_IS1595 PF12760.2 gi|433590852|ref|YP_007280348.1| - 0.066 13.0 0.4 0.25 11.2 0.1 1.9 2 0 0 2 2 2 0 Transposase zinc-ribbon domain zf-ISL3 PF14690.1 gi|433590852|ref|YP_007280348.1| - 0.072 13.1 0.4 0.27 11.3 0.0 1.9 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zinc_ribbon_6 PF14599.1 gi|433590852|ref|YP_007280348.1| - 0.083 12.6 0.3 0.15 11.8 0.2 1.5 1 1 0 1 1 1 0 Zinc-ribbon zf-ribbon_3 PF13248.1 gi|433590852|ref|YP_007280348.1| - 0.091 12.0 1.2 0.26 10.5 0.2 1.9 2 0 0 2 2 2 0 zinc-ribbon domain TFIIS_C PF01096.13 gi|433590852|ref|YP_007280348.1| - 0.11 12.1 0.3 4.1 7.1 0.1 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-dskA_traR PF01258.12 gi|433590852|ref|YP_007280348.1| - 0.11 12.2 7.5 1.6 8.5 5.2 2.2 1 1 0 1 1 1 0 Prokaryotic dksA/traR C4-type zinc finger zf-C2H2 PF00096.21 gi|433590852|ref|YP_007280348.1| - 0.17 12.3 1.4 3.9 7.9 0.1 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type UPF0547 PF10571.4 gi|433590852|ref|YP_007280348.1| - 0.19 11.4 1.4 2.3 7.9 0.2 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Zn-ribbon_8 PF09723.5 gi|433590852|ref|YP_007280348.1| - 0.65 10.0 5.1 3.5 7.6 3.5 2.0 1 1 0 1 1 1 0 Zinc ribbon domain TF_Zn_Ribbon PF08271.7 gi|433590852|ref|YP_007280348.1| - 2 7.8 5.0 3.3 7.0 0.3 2.1 1 1 0 2 2 2 0 TFIIB zinc-binding DUF35_N PF12172.3 gi|433590852|ref|YP_007280348.1| - 2 8.4 7.5 0.72 9.8 1.0 2.4 1 1 2 3 3 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) EamA PF00892.15 gi|433590855|ref|YP_007280351.1| - 1.4 8.9 7.2 0.14 12.1 0.4 2.4 1 1 2 3 3 3 0 EamA-like transporter family RseC_MucC PF04246.7 gi|433590855|ref|YP_007280351.1| - 2.9 7.4 5.3 0.78 9.3 0.3 2.1 2 0 0 2 2 2 0 Positive regulator of sigma(E), RseC/MucC Abhydrolase_6 PF12697.2 gi|433590856|ref|YP_007280352.1| - 5.5e-30 104.9 2.1 6.5e-30 104.7 1.5 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|433590856|ref|YP_007280352.1| - 1.6e-15 57.2 0.0 4.4e-15 55.8 0.0 1.6 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_5 PF12695.2 gi|433590856|ref|YP_007280352.1| - 3.2e-08 33.4 0.0 2e-07 30.8 0.0 1.9 1 1 0 1 1 1 1 Alpha/beta hydrolase family BATS PF06968.8 gi|433590858|ref|YP_007280354.1| - 3.6e-23 81.2 0.0 7.2e-23 80.2 0.0 1.5 1 0 0 1 1 1 1 Biotin and Thiamin Synthesis associated domain Radical_SAM PF04055.16 gi|433590858|ref|YP_007280354.1| - 3.4e-15 56.5 0.8 8.1e-13 48.8 0.1 2.4 2 0 0 2 2 2 2 Radical SAM superfamily Pterin_bind PF00809.17 gi|433590858|ref|YP_007280354.1| - 0.14 11.5 0.1 1.2 8.4 0.1 2.3 1 1 1 2 2 2 0 Pterin binding enzyme Saccharop_dh PF03435.13 gi|433590859|ref|YP_007280355.1| - 0.0021 17.1 0.3 0.024 13.6 0.0 2.3 2 0 0 2 2 2 1 Saccharopine dehydrogenase GFO_IDH_MocA PF01408.17 gi|433590859|ref|YP_007280355.1| - 0.004 17.6 1.0 1.5 9.3 0.0 3.0 4 0 0 4 4 4 2 Oxidoreductase family, NAD-binding Rossmann fold ELFV_dehydrog PF00208.16 gi|433590859|ref|YP_007280355.1| - 0.0068 16.0 0.0 0.013 15.0 0.0 1.5 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase TrkA_N PF02254.13 gi|433590859|ref|YP_007280355.1| - 0.031 14.2 0.3 0.39 10.7 0.0 2.6 3 0 0 3 3 3 0 TrkA-N domain Aminotran_1_2 PF00155.16 gi|433590860|ref|YP_007280356.1| - 1.1e-57 195.7 0.0 1.2e-57 195.5 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.15 gi|433590860|ref|YP_007280356.1| - 0.00011 20.6 0.0 0.00025 19.4 0.0 1.5 1 1 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.12 gi|433590860|ref|YP_007280356.1| - 0.00014 21.0 2.5 0.04 12.9 0.1 2.2 2 0 0 2 2 2 2 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.14 gi|433590860|ref|YP_007280356.1| - 0.0097 14.6 0.0 0.015 14.0 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V OKR_DC_1 PF01276.15 gi|433590860|ref|YP_007280356.1| - 0.076 11.5 0.0 0.11 11.0 0.0 1.2 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, major domain RP1-2 PF12042.3 gi|433590860|ref|YP_007280356.1| - 0.36 10.4 5.2 0.06 13.0 0.6 1.8 2 0 0 2 2 2 0 Tubuliform egg casing silk strands structural domain AAA_26 PF13500.1 gi|433590861|ref|YP_007280357.1| - 5e-34 117.6 0.0 6.1e-34 117.3 0.0 1.0 1 0 0 1 1 1 1 AAA domain CbiA PF01656.18 gi|433590861|ref|YP_007280357.1| - 5.6e-11 42.2 0.6 1.7e-10 40.6 0.4 1.6 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain DUF1611 PF07755.6 gi|433590861|ref|YP_007280357.1| - 0.0012 17.5 0.1 0.0039 15.8 0.0 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF1611) AAA_19 PF13245.1 gi|433590861|ref|YP_007280357.1| - 0.023 14.4 0.8 0.045 13.5 0.2 1.9 2 0 0 2 2 2 0 Part of AAA domain ArsA_ATPase PF02374.10 gi|433590861|ref|YP_007280357.1| - 0.072 12.1 0.2 1.3 7.9 0.0 2.0 2 0 0 2 2 2 0 Anion-transporting ATPase Glyco_trans_4_4 PF13579.1 gi|433590861|ref|YP_007280357.1| - 0.22 11.6 3.2 4.6 7.3 0.2 2.2 2 0 0 2 2 2 0 Glycosyl transferase 4-like domain zf-Di19 PF05605.7 gi|433590862|ref|YP_007280358.1| - 0.0035 17.4 0.1 0.0043 17.1 0.1 1.2 1 0 0 1 1 1 1 Drought induced 19 protein (Di19), zinc-binding zf-C2H2_4 PF13894.1 gi|433590862|ref|YP_007280358.1| - 0.005 17.0 0.1 0.0069 16.6 0.0 1.2 1 0 0 1 1 1 1 C2H2-type zinc finger GAGA PF09237.6 gi|433590862|ref|YP_007280358.1| - 0.017 14.6 0.0 0.029 13.9 0.0 1.3 1 0 0 1 1 1 0 GAGA factor zf-C2H2 PF00096.21 gi|433590862|ref|YP_007280358.1| - 0.11 12.8 0.0 0.16 12.3 0.0 1.2 1 0 0 1 1 1 0 Zinc finger, C2H2 type AAA PF00004.24 gi|433590863|ref|YP_007280359.1| - 1.3e-11 44.8 0.1 5.6e-11 42.7 0.0 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.10 gi|433590863|ref|YP_007280359.1| - 6.7e-07 28.3 0.0 0.01 14.5 0.0 2.2 2 0 0 2 2 2 2 Rad17 cell cycle checkpoint protein RuvB_N PF05496.7 gi|433590863|ref|YP_007280359.1| - 2.9e-06 26.5 0.0 7.2e-06 25.2 0.0 1.6 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus AAA_17 PF13207.1 gi|433590863|ref|YP_007280359.1| - 3.3e-06 27.9 1.9 2.2e-05 25.2 0.0 2.9 2 1 1 3 3 3 1 AAA domain AAA_22 PF13401.1 gi|433590863|ref|YP_007280359.1| - 3.4e-06 27.2 0.2 7.1e-05 22.9 0.0 2.9 3 1 0 3 3 3 1 AAA domain AAA_16 PF13191.1 gi|433590863|ref|YP_007280359.1| - 0.00058 19.9 3.2 0.016 15.2 0.0 3.1 2 1 1 3 3 3 1 AAA ATPase domain Zeta_toxin PF06414.7 gi|433590863|ref|YP_007280359.1| - 0.0016 17.5 0.0 0.0036 16.4 0.0 1.5 1 0 0 1 1 1 1 Zeta toxin AAA_33 PF13671.1 gi|433590863|ref|YP_007280359.1| - 0.0028 17.5 0.1 0.012 15.4 0.0 2.2 2 0 0 2 2 1 1 AAA domain AAA_18 PF13238.1 gi|433590863|ref|YP_007280359.1| - 0.0029 17.9 0.2 0.025 14.8 0.0 2.5 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.1 gi|433590863|ref|YP_007280359.1| - 0.003 17.1 0.2 0.034 13.7 0.1 2.6 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|433590863|ref|YP_007280359.1| - 0.0032 16.6 0.0 0.014 14.6 0.0 1.9 2 0 0 2 2 2 1 Protein of unknown function, DUF258 Bac_DnaA PF00308.13 gi|433590863|ref|YP_007280359.1| - 0.0033 17.1 0.1 0.46 10.1 0.0 2.8 2 1 1 3 3 3 1 Bacterial dnaA protein AAA_28 PF13521.1 gi|433590863|ref|YP_007280359.1| - 0.0057 16.6 0.1 0.031 14.2 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_5 PF07728.9 gi|433590863|ref|YP_007280359.1| - 0.0065 16.1 0.2 0.027 14.2 0.0 2.0 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_14 PF13173.1 gi|433590863|ref|YP_007280359.1| - 0.0076 16.1 0.0 0.19 11.6 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|433590863|ref|YP_007280359.1| - 0.01 15.2 0.2 3 7.1 0.0 2.9 1 1 0 2 2 2 0 AAA domain IstB_IS21 PF01695.12 gi|433590863|ref|YP_007280359.1| - 0.012 15.0 0.0 0.024 14.0 0.0 1.6 1 0 0 1 1 1 0 IstB-like ATP binding protein TIP49 PF06068.8 gi|433590863|ref|YP_007280359.1| - 0.014 14.1 0.0 3.7 6.1 0.0 2.2 2 0 0 2 2 2 0 TIP49 C-terminus CPT PF07931.7 gi|433590863|ref|YP_007280359.1| - 0.014 15.0 0.3 3.3 7.2 0.0 2.7 2 0 0 2 2 2 0 Chloramphenicol phosphotransferase-like protein AAA_2 PF07724.9 gi|433590863|ref|YP_007280359.1| - 0.026 14.4 0.0 0.061 13.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain (Cdc48 subfamily) IPT PF01745.11 gi|433590863|ref|YP_007280359.1| - 0.043 12.9 0.0 0.086 11.9 0.0 1.5 1 0 0 1 1 1 0 Isopentenyl transferase RNA_helicase PF00910.17 gi|433590863|ref|YP_007280359.1| - 0.044 13.9 0.0 0.13 12.4 0.0 1.7 1 1 0 1 1 1 0 RNA helicase DEAD PF00270.24 gi|433590863|ref|YP_007280359.1| - 0.054 12.9 0.0 7.7 5.9 0.0 2.5 2 0 0 2 2 2 0 DEAD/DEAH box helicase NACHT PF05729.7 gi|433590863|ref|YP_007280359.1| - 0.055 13.1 0.1 0.37 10.4 0.0 2.3 2 0 0 2 2 2 0 NACHT domain AAA_19 PF13245.1 gi|433590863|ref|YP_007280359.1| - 0.079 12.7 0.0 0.3 10.8 0.0 2.1 1 0 0 1 1 1 0 Part of AAA domain Viral_helicase1 PF01443.13 gi|433590863|ref|YP_007280359.1| - 0.091 12.2 0.0 0.22 11.0 0.0 1.6 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase DNA_pol3_delta PF06144.8 gi|433590863|ref|YP_007280359.1| - 0.11 11.9 0.0 0.19 11.1 0.0 1.4 1 0 0 1 1 1 0 DNA polymerase III, delta subunit DUF2890 PF11081.3 gi|433590863|ref|YP_007280359.1| - 4.5 7.2 9.2 0.61 10.1 0.1 2.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2890) DUF21 PF01595.15 gi|433590865|ref|YP_007280361.1| - 3e-54 183.1 1.4 3.8e-54 182.7 0.9 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF21 CorC_HlyC PF03471.12 gi|433590865|ref|YP_007280361.1| - 5.1e-22 77.4 0.9 1.5e-21 75.9 0.5 1.9 2 0 0 2 2 2 1 Transporter associated domain CBS PF00571.23 gi|433590865|ref|YP_007280361.1| - 3.6e-15 55.4 2.5 2.1e-10 40.1 0.1 2.5 2 0 0 2 2 2 2 CBS domain MoCF_biosynth PF00994.19 gi|433590866|ref|YP_007280362.1| - 1.9e-31 108.4 0.3 3.3e-31 107.6 0.2 1.4 1 0 0 1 1 1 1 Probable molybdopterin binding domain DUF457 PF04307.9 gi|433590867|ref|YP_007280363.1| - 4.6e-11 42.2 4.6 5e-11 42.1 3.2 1.2 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) ABC1 PF03109.11 gi|433590868|ref|YP_007280364.1| - 1.7e-18 66.7 0.0 3.9e-18 65.5 0.0 1.6 1 0 0 1 1 1 1 ABC1 family APH PF01636.18 gi|433590868|ref|YP_007280364.1| - 2.4e-05 24.1 1.2 0.0028 17.4 0.6 3.5 1 1 0 1 1 1 1 Phosphotransferase enzyme family WaaY PF06176.6 gi|433590868|ref|YP_007280364.1| - 0.067 12.4 0.1 0.11 11.7 0.0 1.3 1 0 0 1 1 1 0 Lipopolysaccharide core biosynthesis protein (WaaY) Pkinase PF00069.20 gi|433590868|ref|YP_007280364.1| - 0.12 11.5 0.0 0.18 10.9 0.0 1.2 1 0 0 1 1 1 0 Protein kinase domain HTH_31 PF13560.1 gi|433590869|ref|YP_007280365.1| - 4.6e-08 33.1 0.2 1.1e-07 31.9 0.2 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.17 gi|433590869|ref|YP_007280365.1| - 9e-07 28.6 0.0 3.1e-06 26.9 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix HTH_19 PF12844.2 gi|433590869|ref|YP_007280365.1| - 1.7e-06 28.0 0.0 3.6e-06 26.9 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain AA_permease_2 PF13520.1 gi|433590870|ref|YP_007280366.1| - 3.8e-49 167.3 36.7 4.9e-49 167.0 25.5 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|433590870|ref|YP_007280366.1| - 1.7e-48 165.1 37.7 2.1e-48 164.8 26.1 1.1 1 0 0 1 1 1 1 Amino acid permease Usp PF00582.21 gi|433590870|ref|YP_007280366.1| - 9.3e-18 64.7 6.5 2.1e-13 50.6 0.2 2.3 2 0 0 2 2 2 2 Universal stress protein family GCV_H PF01597.14 gi|433590871|ref|YP_007280367.1| - 4e-42 142.7 0.0 4.4e-42 142.5 0.0 1.0 1 0 0 1 1 1 1 Glycine cleavage H-protein UL11 PF11094.3 gi|433590871|ref|YP_007280367.1| - 0.31 10.8 1.9 0.73 9.6 0.1 2.2 2 0 0 2 2 2 0 Membrane-associated tegument protein GCV_T PF01571.16 gi|433590872|ref|YP_007280368.1| - 1.6e-63 213.8 0.2 2.3e-63 213.4 0.2 1.2 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain GCV_T_C PF08669.6 gi|433590872|ref|YP_007280368.1| - 1.2e-26 92.5 0.5 2.1e-26 91.7 0.4 1.4 1 0 0 1 1 1 1 Glycine cleavage T-protein C-terminal barrel domain TrmE_N PF10396.4 gi|433590872|ref|YP_007280368.1| - 0.0048 16.8 0.0 0.36 10.7 0.0 2.6 2 1 0 2 2 2 1 GTP-binding protein TrmE N-terminus Aldedh PF00171.17 gi|433590873|ref|YP_007280369.1| - 3.9e-159 529.8 0.0 4.5e-159 529.6 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family HSBP1 PF06825.7 gi|433590873|ref|YP_007280369.1| - 0.018 14.5 0.0 0.03 13.8 0.0 1.3 1 0 0 1 1 1 0 Heat shock factor binding protein 1 DDE_Tnp_IS240 PF13610.1 gi|433590875|ref|YP_007280371.1| - 6.9e-17 61.7 0.2 9.4e-17 61.2 0.1 1.2 1 0 0 1 1 1 1 DDE domain rve PF00665.21 gi|433590875|ref|YP_007280371.1| - 6.1e-05 23.1 0.4 0.00012 22.1 0.3 1.5 1 0 0 1 1 1 1 Integrase core domain DDE_3 PF13358.1 gi|433590875|ref|YP_007280371.1| - 0.00037 20.2 0.0 0.0025 17.5 0.0 2.2 1 1 1 2 2 2 1 DDE superfamily endonuclease DDE_Tnp_IS66 PF03050.9 gi|433590875|ref|YP_007280371.1| - 0.00064 19.0 0.4 0.0011 18.2 0.1 1.5 1 1 0 1 1 1 1 Transposase IS66 family UPF0158 PF03682.8 gi|433590875|ref|YP_007280371.1| - 0.025 14.1 0.1 0.32 10.6 0.0 2.1 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0158) DDE_Tnp_4 PF13359.1 gi|433590875|ref|YP_007280371.1| - 0.057 13.0 0.0 0.079 12.5 0.0 1.2 1 0 0 1 1 1 0 DDE superfamily endonuclease TMEM71 PF15121.1 gi|433590875|ref|YP_007280371.1| - 0.1 12.3 0.4 0.22 11.2 0.3 1.5 1 0 0 1 1 1 0 TMEM71 protein family NIT PF08376.5 gi|433590876|ref|YP_007280372.1| - 0.069 12.6 0.0 0.069 12.6 0.0 1.1 1 0 0 1 1 1 0 Nitrate and nitrite sensing Peptidase_S8 PF00082.17 gi|433590877|ref|YP_007280373.1| - 1e-52 179.0 5.8 1e-52 179.0 4.0 1.5 2 0 0 2 2 2 1 Subtilase family TAT_signal PF10518.4 gi|433590877|ref|YP_007280373.1| - 0.022 14.7 0.3 0.022 14.7 0.2 3.3 4 0 0 4 4 4 0 TAT (twin-arginine translocation) pathway signal sequence CHB_HEX_C_1 PF13290.1 gi|433590877|ref|YP_007280373.1| - 0.11 12.3 0.9 2.4 8.0 0.2 2.8 1 1 1 2 2 2 0 Chitobiase/beta-hexosaminidase C-terminal domain CHB_HEX_C PF03174.8 gi|433590877|ref|YP_007280373.1| - 0.26 11.1 2.8 0.97 9.3 0.1 3.0 2 1 1 3 3 3 0 Chitobiase/beta-hexosaminidase C-terminal domain Peptidase_S8 PF00082.17 gi|433590878|ref|YP_007280374.1| - 1.6e-53 181.7 8.9 2.2e-53 181.2 6.2 1.2 1 0 0 1 1 1 1 Subtilase family PPC PF04151.10 gi|433590878|ref|YP_007280374.1| - 0.00034 21.5 1.7 0.00034 21.5 1.2 2.8 2 1 0 2 2 2 1 Bacterial pre-peptidase C-terminal domain NYN PF01936.13 gi|433590879|ref|YP_007280375.1| - 2.2e-19 70.1 0.0 2.6e-19 69.9 0.0 1.0 1 0 0 1 1 1 1 NYN domain TRAM PF01938.15 gi|433590880|ref|YP_007280376.1| - 0.00021 21.0 1.3 0.00029 20.5 0.9 1.3 1 0 0 1 1 1 1 TRAM domain NfeD PF01957.13 gi|433590880|ref|YP_007280376.1| - 0.034 14.2 0.6 0.1 12.7 0.1 1.9 1 1 2 3 3 3 0 NfeD-like C-terminal, partner-binding Na_H_antiporter PF03553.9 gi|433590881|ref|YP_007280377.1| - 4.2e-32 111.3 44.5 4e-16 58.9 7.6 2.6 1 1 1 2 2 2 2 Na+/H+ antiporter family UPF0154 PF03672.8 gi|433590881|ref|YP_007280377.1| - 0.12 11.9 0.3 0.49 10.0 0.2 2.0 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0154) MNHE PF01899.11 gi|433590881|ref|YP_007280377.1| - 0.13 11.9 4.5 0.56 9.8 3.1 2.2 1 0 0 1 1 1 0 Na+/H+ ion antiporter subunit TatD_DNase PF01026.16 gi|433590882|ref|YP_007280378.1| - 3.5e-20 72.2 0.0 1.2e-18 67.1 0.0 2.0 1 1 0 1 1 1 1 TatD related DNase Glycos_trans_3N PF02885.12 gi|433590882|ref|YP_007280378.1| - 0.044 13.3 0.0 0.1 12.2 0.0 1.6 1 0 0 1 1 1 0 Glycosyl transferase family, helical bundle domain DUF2150 PF09920.4 gi|433590883|ref|YP_007280379.1| - 5.5e-70 234.8 8.6 6.2e-70 234.6 6.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2150) DDE_Tnp_IS66 PF03050.9 gi|433590884|ref|YP_007280380.1| - 2.8e-52 177.5 0.0 2.8e-52 177.5 0.0 2.1 2 0 0 2 2 2 1 Transposase IS66 family SlyX PF04102.7 gi|433590884|ref|YP_007280380.1| - 8.4e-09 35.6 7.0 2e-08 34.4 4.8 1.7 1 0 0 1 1 1 1 SlyX zf-IS66 PF13005.2 gi|433590884|ref|YP_007280380.1| - 0.00066 19.5 5.8 0.00066 19.5 4.0 2.5 2 0 0 2 2 1 1 zinc-finger binding domain of transposase IS66 Atg14 PF10186.4 gi|433590884|ref|YP_007280380.1| - 0.0012 17.9 8.2 0.0019 17.1 5.7 1.3 1 0 0 1 1 1 1 UV radiation resistance protein and autophagy-related subunit 14 Fmp27_WPPW PF10359.4 gi|433590884|ref|YP_007280380.1| - 0.0026 16.2 7.0 0.0037 15.7 4.8 1.1 1 0 0 1 1 1 1 RNA pol II promoter Fmp27 protein domain MscS_porin PF12795.2 gi|433590884|ref|YP_007280380.1| - 0.0057 16.0 8.0 0.0091 15.3 5.6 1.3 1 0 0 1 1 1 1 Mechanosensitive ion channel porin domain DUF16 PF01519.11 gi|433590884|ref|YP_007280380.1| - 0.0057 16.8 5.1 0.013 15.7 3.6 1.5 1 0 0 1 1 1 1 Protein of unknown function DUF16 ATG16 PF08614.6 gi|433590884|ref|YP_007280380.1| - 0.013 15.3 10.5 0.025 14.4 7.2 1.4 1 0 0 1 1 1 0 Autophagy protein 16 (ATG16) Cortex-I_coil PF09304.5 gi|433590884|ref|YP_007280380.1| - 0.016 15.1 8.9 0.034 14.1 6.2 1.4 1 0 0 1 1 1 0 Cortexillin I, coiled coil IncA PF04156.9 gi|433590884|ref|YP_007280380.1| - 0.02 14.4 12.1 0.045 13.3 8.4 1.5 1 0 0 1 1 1 0 IncA protein HSBP1 PF06825.7 gi|433590884|ref|YP_007280380.1| - 0.022 14.3 6.1 0.49 10.0 1.7 2.5 2 0 0 2 2 2 0 Heat shock factor binding protein 1 DZR PF12773.2 gi|433590884|ref|YP_007280380.1| - 0.028 14.2 2.8 0.069 12.9 2.0 1.6 1 0 0 1 1 1 0 Double zinc ribbon AAA_13 PF13166.1 gi|433590884|ref|YP_007280380.1| - 0.039 12.4 7.5 0.053 11.9 5.2 1.1 1 0 0 1 1 1 0 AAA domain Cast PF10174.4 gi|433590884|ref|YP_007280380.1| - 0.045 11.7 10.2 0.063 11.3 7.0 1.1 1 0 0 1 1 1 0 RIM-binding protein of the cytomatrix active zone GAS PF13851.1 gi|433590884|ref|YP_007280380.1| - 0.066 12.3 9.5 0.11 11.6 6.6 1.3 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding DDE_Tnp_IS240 PF13610.1 gi|433590884|ref|YP_007280380.1| - 0.074 13.0 3.1 0.19 11.6 0.0 2.5 2 1 0 2 2 2 0 DDE domain Spc7 PF08317.6 gi|433590884|ref|YP_007280380.1| - 0.084 11.5 8.5 0.17 10.5 5.9 1.4 1 0 0 1 1 1 0 Spc7 kinetochore protein Mnd1 PF03962.10 gi|433590884|ref|YP_007280380.1| - 0.087 12.4 9.9 0.26 10.9 6.8 1.7 1 0 0 1 1 1 0 Mnd1 family DUF3552 PF12072.3 gi|433590884|ref|YP_007280380.1| - 0.089 11.9 15.5 0.15 11.2 10.7 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3552) TMF_DNA_bd PF12329.3 gi|433590884|ref|YP_007280380.1| - 0.11 12.3 12.3 0.25 11.1 8.5 1.6 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding TMCO5 PF14992.1 gi|433590884|ref|YP_007280380.1| - 0.14 11.3 8.7 0.23 10.5 6.0 1.3 1 0 0 1 1 1 0 TMCO5 family Fib_alpha PF08702.5 gi|433590884|ref|YP_007280380.1| - 0.14 12.2 5.0 0.31 11.1 3.5 1.5 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family FliD_C PF07195.7 gi|433590884|ref|YP_007280380.1| - 0.17 11.1 4.2 0.31 10.3 2.9 1.4 1 0 0 1 1 1 0 Flagellar hook-associated protein 2 C-terminus Flagellin_C PF00700.16 gi|433590884|ref|YP_007280380.1| - 0.24 11.5 1.8 0.48 10.6 1.3 1.4 1 0 0 1 1 1 0 Bacterial flagellin C-terminal helical region Allexi_40kDa PF05549.6 gi|433590884|ref|YP_007280380.1| - 0.27 10.5 2.8 0.46 9.7 1.9 1.3 1 0 0 1 1 1 0 Allexivirus 40kDa protein Fzo_mitofusin PF04799.8 gi|433590884|ref|YP_007280380.1| - 0.36 10.1 3.5 0.67 9.3 2.5 1.3 1 0 0 1 1 1 0 fzo-like conserved region DUF3584 PF12128.3 gi|433590884|ref|YP_007280380.1| - 0.42 7.8 8.1 0.62 7.3 5.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) DUF812 PF05667.6 gi|433590884|ref|YP_007280380.1| - 0.44 8.9 8.7 0.65 8.4 6.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF812) DASH_Spc34 PF08657.5 gi|433590884|ref|YP_007280380.1| - 0.49 10.0 14.2 2.1 7.9 6.7 2.4 1 1 1 2 2 2 0 DASH complex subunit Spc34 COG2 PF06148.6 gi|433590884|ref|YP_007280380.1| - 0.61 9.9 5.2 1.1 9.0 3.6 1.4 1 0 0 1 1 1 0 COG (conserved oligomeric Golgi) complex component, COG2 Med9 PF07544.8 gi|433590884|ref|YP_007280380.1| - 0.89 9.3 19.2 12 5.7 7.6 3.2 2 1 1 3 3 3 0 RNA polymerase II transcription mediator complex subunit 9 DUF536 PF04394.9 gi|433590884|ref|YP_007280380.1| - 0.93 9.2 15.4 1.6 8.4 10.7 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF536 MIF4G_like_2 PF09090.6 gi|433590884|ref|YP_007280380.1| - 1 8.5 5.5 0.96 8.6 2.9 1.6 2 0 0 2 2 1 0 MIF4G like DUF1465 PF07323.7 gi|433590884|ref|YP_007280380.1| - 1.1 8.8 7.1 2.1 7.8 1.7 2.9 3 0 0 3 3 2 0 Protein of unknown function (DUF1465) DUF1664 PF07889.7 gi|433590884|ref|YP_007280380.1| - 1.8 8.3 4.7 3.8 7.3 3.2 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) V_ATPase_I PF01496.14 gi|433590884|ref|YP_007280380.1| - 2.5 5.8 6.5 3.5 5.3 4.5 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family FemAB PF02388.11 gi|433590884|ref|YP_007280380.1| - 3 6.4 6.9 4.3 5.8 4.8 1.1 1 0 0 1 1 1 0 FemAB family TMPIT PF07851.8 gi|433590884|ref|YP_007280380.1| - 3.8 6.4 4.1 6 5.8 2.9 1.2 1 0 0 1 1 1 0 TMPIT-like protein BTV_NS2 PF04514.7 gi|433590884|ref|YP_007280380.1| - 4 6.2 9.8 6.3 5.5 6.8 1.2 1 0 0 1 1 1 0 Bluetongue virus non-structural protein NS2 DUF3450 PF11932.3 gi|433590884|ref|YP_007280380.1| - 4.6 6.4 12.1 0.89 8.7 5.6 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3450) DUF4337 PF14235.1 gi|433590884|ref|YP_007280380.1| - 5.5 6.8 6.2 9.8 5.9 4.3 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4337) DUF4446 PF14584.1 gi|433590884|ref|YP_007280380.1| - 9 6.1 6.0 19 5.0 4.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF4446) Costars PF14705.1 gi|433590885|ref|YP_007280381.1| - 0.15 12.0 0.0 0.29 11.1 0.0 1.4 1 0 0 1 1 1 0 Costars HMG_CoA_synt_N PF01154.12 gi|433590886|ref|YP_007280382.1| - 2.8e-26 92.0 0.0 4.6e-26 91.4 0.0 1.3 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A synthase N terminal HMG_CoA_synt_C PF08540.5 gi|433590886|ref|YP_007280382.1| - 2e-23 83.2 0.0 3.4e-23 82.5 0.0 1.3 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A synthase C terminal MAF_flag10 PF01973.13 gi|433590886|ref|YP_007280382.1| - 0.18 11.3 0.0 1.4 8.4 0.0 2.0 1 1 1 2 2 2 0 Protein of unknown function DUF115 UPF0118 PF01594.11 gi|433590887|ref|YP_007280383.1| - 4.5e-43 147.4 32.4 5.8e-43 147.1 22.5 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF20 DUF2270 PF10028.4 gi|433590888|ref|YP_007280384.1| - 2.9e-57 193.1 3.1 3.4e-57 192.9 2.2 1.0 1 0 0 1 1 1 1 Predicted integral membrane protein (DUF2270) DUF998 PF06197.8 gi|433590888|ref|YP_007280384.1| - 4.4e-05 22.8 4.4 9.1e-05 21.8 0.6 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF998) DUF4117 PF13491.1 gi|433590888|ref|YP_007280384.1| - 0.071 12.5 0.3 0.071 12.5 0.2 2.3 2 1 1 3 3 3 0 Domain of unknown function (DUF4117) Bax1-I PF01027.15 gi|433590888|ref|YP_007280384.1| - 0.072 12.6 4.3 3.9 7.0 0.6 2.1 2 0 0 2 2 2 0 Inhibitor of apoptosis-promoting Bax1 DUF1673 PF07895.6 gi|433590888|ref|YP_007280384.1| - 0.093 12.2 0.6 0.18 11.3 0.4 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF1673) OST3_OST6 PF04756.8 gi|433590888|ref|YP_007280384.1| - 0.095 12.2 1.0 4.7 6.7 0.1 2.1 2 0 0 2 2 2 0 OST3 / OST6 family DUF4231 PF14015.1 gi|433590888|ref|YP_007280384.1| - 0.86 9.6 6.2 0.4 10.6 0.2 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF4231) DUF4131 PF13567.1 gi|433590888|ref|YP_007280384.1| - 9.3 5.6 12.1 1.6 8.1 2.2 2.4 2 1 0 2 2 2 0 Domain of unknown function (DUF4131) GDC-P PF02347.11 gi|433590889|ref|YP_007280385.1| - 1.3e-109 366.7 0.0 1.5e-109 366.5 0.0 1.0 1 0 0 1 1 1 1 Glycine cleavage system P-protein Cys_Met_Meta_PP PF01053.15 gi|433590889|ref|YP_007280385.1| - 0.067 11.4 0.0 0.1 10.8 0.0 1.2 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme DUF1776 PF08643.5 gi|433590889|ref|YP_007280385.1| - 0.13 11.4 0.0 0.21 10.7 0.0 1.2 1 0 0 1 1 1 0 Fungal family of unknown function (DUF1776) Aminotran_5 PF00266.14 gi|433590890|ref|YP_007280386.1| - 4.9e-11 41.9 0.0 7.1e-11 41.4 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V GDC-P PF02347.11 gi|433590890|ref|YP_007280386.1| - 2.6e-07 29.7 0.0 1.1e-05 24.3 0.0 2.0 2 0 0 2 2 2 2 Glycine cleavage system P-protein Beta_elim_lyase PF01212.16 gi|433590890|ref|YP_007280386.1| - 3.8e-07 29.5 0.0 6.8e-07 28.7 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.12 gi|433590890|ref|YP_007280386.1| - 0.00028 20.0 0.0 0.00043 19.4 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_1_2 PF00155.16 gi|433590890|ref|YP_007280386.1| - 0.035 13.0 0.0 0.049 12.5 0.0 1.2 1 0 0 1 1 1 0 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.15 gi|433590890|ref|YP_007280386.1| - 0.21 9.8 0.0 0.29 9.3 0.0 1.1 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme DUF2162 PF09930.4 gi|433590891|ref|YP_007280387.1| - 0.0085 15.2 0.0 0.0098 15.0 0.0 1.2 1 0 0 1 1 1 1 Predicted transporter (DUF2162) zf-H2C2_2 PF13465.1 gi|433590892|ref|YP_007280388.1| - 2.5e-06 27.4 1.9 0.0026 17.9 0.1 2.1 2 0 0 2 2 2 2 Zinc-finger double domain Rubredoxin PF00301.15 gi|433590892|ref|YP_007280388.1| - 0.00015 21.5 1.7 0.39 10.6 0.0 2.2 2 0 0 2 2 2 2 Rubredoxin zf-C2H2 PF00096.21 gi|433590892|ref|YP_007280388.1| - 0.00017 21.7 1.4 0.14 12.5 0.1 2.2 2 0 0 2 2 2 2 Zinc finger, C2H2 type zf-RING_3 PF14369.1 gi|433590892|ref|YP_007280388.1| - 0.00071 19.5 0.9 0.11 12.4 0.0 2.2 2 0 0 2 2 2 1 zinc-finger Zn_Tnp_IS1595 PF12760.2 gi|433590892|ref|YP_007280388.1| - 0.0012 18.6 0.8 0.0015 18.3 0.6 1.2 1 0 0 1 1 1 1 Transposase zinc-ribbon domain Lar_restr_allev PF14354.1 gi|433590892|ref|YP_007280388.1| - 0.0017 18.5 0.5 0.0017 18.5 0.4 1.1 1 0 0 1 1 1 1 Restriction alleviation protein Lar DUF1272 PF06906.6 gi|433590892|ref|YP_007280388.1| - 0.0035 17.1 1.8 0.34 10.7 0.2 2.1 1 1 1 2 2 2 1 Protein of unknown function (DUF1272) zf-IS66 PF13005.2 gi|433590892|ref|YP_007280388.1| - 0.0043 16.9 1.1 2 8.4 0.2 2.2 2 0 0 2 2 2 2 zinc-finger binding domain of transposase IS66 Zn-ribbon_8 PF09723.5 gi|433590892|ref|YP_007280388.1| - 0.0079 16.1 0.4 0.34 10.8 0.0 2.1 2 0 0 2 2 2 1 Zinc ribbon domain zf-DNA_Pol PF08996.5 gi|433590892|ref|YP_007280388.1| - 0.022 14.1 0.0 0.024 13.9 0.0 1.0 1 0 0 1 1 1 0 DNA Polymerase alpha zinc finger Zn_Tnp_IS1 PF03811.8 gi|433590892|ref|YP_007280388.1| - 0.028 13.9 0.1 1.9 8.0 0.0 2.2 2 0 0 2 2 2 0 InsA N-terminal domain TF_Zn_Ribbon PF08271.7 gi|433590892|ref|YP_007280388.1| - 0.028 13.7 0.9 0.56 9.5 0.0 2.1 2 0 0 2 2 2 0 TFIIB zinc-binding TFIIS_C PF01096.13 gi|433590892|ref|YP_007280388.1| - 0.032 13.8 1.6 0.17 11.5 0.1 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Ribosomal_S27e PF01667.12 gi|433590892|ref|YP_007280388.1| - 0.04 13.4 0.5 0.59 9.7 0.0 2.0 1 1 1 2 2 2 0 Ribosomal protein S27 PhnA_Zn_Ribbon PF08274.7 gi|433590892|ref|YP_007280388.1| - 0.045 13.5 0.8 0.14 11.9 0.6 1.7 1 1 0 1 1 1 0 PhnA Zinc-Ribbon TerY-C PF15616.1 gi|433590892|ref|YP_007280388.1| - 0.048 13.5 0.1 0.051 13.5 0.1 1.1 1 0 0 1 1 1 0 TerY-C metal binding domain DnaJ_CXXCXGXG PF00684.14 gi|433590892|ref|YP_007280388.1| - 0.059 13.4 0.5 0.081 12.9 0.3 1.4 1 1 0 1 1 1 0 DnaJ central domain DUF3797 PF12677.2 gi|433590892|ref|YP_007280388.1| - 0.078 12.6 1.3 5.9 6.6 0.0 2.2 1 1 0 2 2 2 0 Domain of unknown function (DUF3797) DUF983 PF06170.7 gi|433590892|ref|YP_007280388.1| - 0.11 12.5 0.6 3.8 7.6 0.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF983) zf-ribbon_3 PF13248.1 gi|433590892|ref|YP_007280388.1| - 0.18 11.0 1.5 8.5 5.7 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-C4_Topoisom PF01396.14 gi|433590892|ref|YP_007280388.1| - 0.23 11.0 1.2 2.2 7.8 0.1 2.1 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zf-TFIIB PF13453.1 gi|433590892|ref|YP_007280388.1| - 0.32 10.2 2.1 3.6 6.8 0.6 2.2 2 0 0 2 2 2 0 Transcription factor zinc-finger Auto_anti-p27 PF06677.7 gi|433590892|ref|YP_007280388.1| - 0.32 10.8 1.3 13 5.6 0.3 2.2 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-ISL3 PF14690.1 gi|433590892|ref|YP_007280388.1| - 0.37 10.8 5.3 4.4 7.4 0.2 2.2 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-Mss51 PF13824.1 gi|433590892|ref|YP_007280388.1| - 0.43 10.4 4.2 3.7 7.4 0.4 2.1 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 DNA_ligase_ZBD PF03119.11 gi|433590892|ref|YP_007280388.1| - 2.4 7.9 4.9 19 5.0 0.9 2.2 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain DUF4379 PF14311.1 gi|433590892|ref|YP_007280388.1| - 2.4 8.0 5.1 0.71 9.7 0.4 2.0 1 1 2 3 3 3 0 Domain of unknown function (DUF4379) UPF0547 PF10571.4 gi|433590892|ref|YP_007280388.1| - 6.9 6.4 9.5 12 5.7 0.9 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Cob_adeno_trans PF01923.13 gi|433590893|ref|YP_007280389.1| - 4.5e-58 195.6 0.0 5e-58 195.4 0.0 1.0 1 0 0 1 1 1 1 Cobalamin adenosyltransferase YlbD_coat PF14071.1 gi|433590893|ref|YP_007280389.1| - 0.098 12.7 0.0 0.3 11.1 0.0 1.7 2 0 0 2 2 2 0 Putative coat protein DUF1470 PF07336.6 gi|433590893|ref|YP_007280389.1| - 1.1 9.6 6.6 2.5 8.4 3.9 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1470) DoxX PF07681.7 gi|433590895|ref|YP_007280391.1| - 8.5e-13 48.5 10.3 8.5e-13 48.5 7.2 1.6 2 0 0 2 2 2 1 DoxX HR_lesion PF05514.6 gi|433590895|ref|YP_007280391.1| - 1.7e-05 24.6 0.5 9.6e-05 22.2 0.1 1.9 1 1 1 2 2 2 1 HR-like lesion-inducing DoxX_2 PF13564.1 gi|433590895|ref|YP_007280391.1| - 0.014 15.3 13.2 0.32 10.9 7.9 2.4 2 1 0 2 2 2 0 DoxX-like family DUF1772 PF08592.6 gi|433590895|ref|YP_007280391.1| - 0.3 10.7 0.1 0.3 10.7 0.1 2.3 2 1 0 2 2 2 0 Domain of unknown function (DUF1772) TMEMspv1-c74-12 PF11044.3 gi|433590895|ref|YP_007280391.1| - 4.9 6.7 5.8 0.42 10.1 0.4 1.9 2 0 0 2 2 2 0 Plectrovirus spv1-c74 ORF 12 transmembrane protein Adenine_deam_C PF13382.1 gi|433590896|ref|YP_007280392.1| - 4.3e-32 110.6 0.0 6.9e-32 109.9 0.0 1.4 1 0 0 1 1 1 1 Adenine deaminase C-terminal domain Amidohydro_4 PF13147.1 gi|433590896|ref|YP_007280392.1| - 1.3e-13 51.6 12.9 1.3e-13 51.6 8.9 2.5 2 1 0 2 2 2 1 Amidohydrolase Amidohydro_5 PF13594.1 gi|433590896|ref|YP_007280392.1| - 3.3e-11 42.8 0.2 1e-10 41.2 0.1 1.9 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_1 PF01979.15 gi|433590896|ref|YP_007280392.1| - 6e-11 42.5 0.2 7.5e-06 25.8 0.0 2.4 2 0 0 2 2 2 2 Amidohydrolase family Amidohydro_3 PF07969.6 gi|433590896|ref|YP_007280392.1| - 2.8e-05 23.5 6.5 0.021 14.0 0.2 3.0 3 1 0 3 3 3 2 Amidohydrolase family TatD_DNase PF01026.16 gi|433590896|ref|YP_007280392.1| - 0.033 13.4 0.0 0.053 12.7 0.0 1.3 1 0 0 1 1 1 0 TatD related DNase DDE_5 PF13546.1 gi|433590898|ref|YP_007280394.1| - 1.8e-18 66.3 0.0 4.2e-18 65.1 0.0 1.4 1 1 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_1 PF01609.16 gi|433590898|ref|YP_007280394.1| - 3.3e-12 46.3 0.4 6.3e-12 45.4 0.1 1.6 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_2 PF04693.7 gi|433590898|ref|YP_007280394.1| - 0.00013 21.0 0.0 0.00057 18.9 0.0 1.9 1 1 0 1 1 1 1 Archaeal putative transposase ISC1217 ABC2_membrane_4 PF12730.2 gi|433590899|ref|YP_007280395.1| - 0.021 13.9 23.3 0.034 13.2 13.9 2.1 2 0 0 2 2 2 0 ABC-2 family transporter protein Fst_toxin PF13955.1 gi|433590899|ref|YP_007280395.1| - 0.023 14.3 0.5 0.091 12.4 0.4 2.1 1 0 0 1 1 1 0 Toxin Fst, type I toxin-antitoxin system Vps8 PF12816.2 gi|433590899|ref|YP_007280395.1| - 0.033 13.4 0.0 3.9 6.6 0.0 2.3 2 0 0 2 2 2 0 Golgi CORVET complex core vacuolar protein 8 TauE PF01925.14 gi|433590899|ref|YP_007280395.1| - 0.078 12.4 6.7 0.13 11.6 4.7 1.3 1 0 0 1 1 1 0 Sulfite exporter TauE/SafE TetR_C_8 PF14278.1 gi|433590899|ref|YP_007280395.1| - 6.5 7.2 7.5 1.3 9.4 0.3 3.1 3 1 0 3 3 3 0 Transcriptional regulator C-terminal region HTH_10 PF04967.7 gi|433590902|ref|YP_007280398.1| - 3.8e-17 61.6 0.0 6.7e-17 60.8 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain HTH_24 PF13412.1 gi|433590902|ref|YP_007280398.1| - 5.2e-05 22.5 0.0 0.00012 21.3 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|433590902|ref|YP_007280398.1| - 7e-05 22.4 0.6 0.00089 18.8 0.0 2.6 2 1 0 2 2 2 1 MarR family HTH_AsnC-type PF13404.1 gi|433590902|ref|YP_007280398.1| - 0.00035 20.0 1.4 0.0099 15.4 0.1 2.6 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_20 PF12840.2 gi|433590902|ref|YP_007280398.1| - 0.0016 18.1 0.0 0.0043 16.8 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain Fe_dep_repress PF01325.14 gi|433590902|ref|YP_007280398.1| - 0.0022 17.8 0.0 0.0085 16.0 0.0 1.9 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_IclR PF09339.5 gi|433590902|ref|YP_007280398.1| - 0.0043 16.6 0.1 0.014 14.9 0.0 1.9 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_27 PF13463.1 gi|433590902|ref|YP_007280398.1| - 0.014 15.6 0.1 0.049 13.9 0.1 1.9 1 0 0 1 1 1 0 Winged helix DNA-binding domain MarR PF01047.17 gi|433590902|ref|YP_007280398.1| - 0.026 14.2 0.0 0.05 13.3 0.0 1.4 1 0 0 1 1 1 0 MarR family PuR_N PF09182.5 gi|433590902|ref|YP_007280398.1| - 0.029 13.9 0.0 0.05 13.2 0.0 1.3 1 0 0 1 1 1 0 Bacterial purine repressor, N-terminal HTH_Crp_2 PF13545.1 gi|433590902|ref|YP_007280398.1| - 0.064 13.0 0.0 0.23 11.2 0.0 1.9 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain Phage_CI_repr PF07022.8 gi|433590902|ref|YP_007280398.1| - 0.067 13.2 0.0 0.16 12.0 0.0 1.6 1 0 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain GntR PF00392.16 gi|433590902|ref|YP_007280398.1| - 0.1 12.0 0.1 0.96 8.9 0.0 2.1 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family UPF0122 PF04297.9 gi|433590902|ref|YP_007280398.1| - 0.16 11.9 0.1 0.29 11.1 0.0 1.3 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like DrsE PF02635.10 gi|433590903|ref|YP_007280399.1| - 9.3e-05 22.4 0.0 0.00011 22.2 0.0 1.1 1 0 0 1 1 1 1 DsrE/DsrF-like family DUF2142 PF09913.4 gi|433590904|ref|YP_007280400.1| - 0.065 11.8 1.2 0.07 11.7 0.8 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2142) OppC_N PF12911.2 gi|433590904|ref|YP_007280400.1| - 0.093 12.1 1.6 2.9 7.3 0.5 2.1 2 0 0 2 2 2 0 N-terminal TM domain of oligopeptide transport permease C DUF3262 PF11660.3 gi|433590904|ref|YP_007280400.1| - 1.5 8.9 6.4 0.1 12.6 0.9 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3262) DUF3285 PF11688.3 gi|433590904|ref|YP_007280400.1| - 3 7.5 4.8 2.3 7.9 0.6 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3285) Fe_dep_repress PF01325.14 gi|433590905|ref|YP_007280401.1| - 5.6e-12 45.4 0.0 1.1e-11 44.5 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain MarR_2 PF12802.2 gi|433590905|ref|YP_007280401.1| - 0.0003 20.3 0.1 0.00057 19.5 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|433590905|ref|YP_007280401.1| - 0.003 17.8 0.1 0.0046 17.2 0.1 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain Fe_dep_repr_C PF02742.10 gi|433590905|ref|YP_007280401.1| - 0.0034 17.0 0.0 0.0056 16.3 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain MarR PF01047.17 gi|433590905|ref|YP_007280401.1| - 0.0079 15.8 0.0 0.014 15.0 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|433590905|ref|YP_007280401.1| - 0.027 14.0 0.2 0.08 12.5 0.1 1.9 2 0 0 2 2 2 0 IclR helix-turn-helix domain TetR_N PF00440.18 gi|433590905|ref|YP_007280401.1| - 0.11 12.1 0.1 0.22 11.1 0.1 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family HTH_24 PF13412.1 gi|433590905|ref|YP_007280401.1| - 0.12 11.7 0.0 0.22 10.9 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding MatE PF01554.13 gi|433590908|ref|YP_007280404.1| - 2.6e-44 150.6 15.3 3.4e-23 82.0 0.2 2.4 2 0 0 2 2 2 2 MatE Polysacc_synt_C PF14667.1 gi|433590908|ref|YP_007280404.1| - 1.1e-08 35.0 7.9 1.1e-08 35.0 5.5 4.0 3 1 0 3 3 3 1 Polysaccharide biosynthesis C-terminal domain MVIN PF03023.9 gi|433590908|ref|YP_007280404.1| - 6.6e-07 28.1 6.6 1.6e-06 26.8 4.5 1.6 1 0 0 1 1 1 1 MviN-like protein AAA_23 PF13476.1 gi|433590909|ref|YP_007280405.1| - 2.3e-07 31.3 11.3 2.3e-07 31.3 7.9 4.4 2 2 0 2 2 2 1 AAA domain DUF3584 PF12128.3 gi|433590909|ref|YP_007280405.1| - 1.5e-06 25.9 41.9 2.8e-05 21.7 15.1 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF3584) CENP-F_leu_zip PF10473.4 gi|433590909|ref|YP_007280405.1| - 7.2e-06 25.9 60.3 0.016 15.0 16.6 4.6 2 2 2 4 4 4 4 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 IncA PF04156.9 gi|433590909|ref|YP_007280405.1| - 2.8e-05 23.7 69.3 0.014 14.9 12.9 4.5 2 2 1 3 3 3 2 IncA protein TPR_MLP1_2 PF07926.7 gi|433590909|ref|YP_007280405.1| - 6.3e-05 22.7 43.1 0.0036 17.0 11.2 4.0 1 1 1 3 3 3 2 TPR/MLP1/MLP2-like protein Spc7 PF08317.6 gi|433590909|ref|YP_007280405.1| - 0.00018 20.2 42.9 0.12 11.0 1.6 4.4 2 2 2 4 4 4 4 Spc7 kinetochore protein AAA_13 PF13166.1 gi|433590909|ref|YP_007280405.1| - 0.0027 16.2 31.9 0.017 13.6 9.8 2.7 2 1 0 2 2 2 2 AAA domain Baculo_PEP_C PF04513.7 gi|433590909|ref|YP_007280405.1| - 0.0032 17.2 15.9 0.95 9.2 0.4 4.8 3 2 2 5 5 4 2 Baculovirus polyhedron envelope protein, PEP, C terminus AAA_27 PF13514.1 gi|433590909|ref|YP_007280405.1| - 0.0068 14.1 56.4 0.064 10.9 12.9 2.8 2 2 0 2 2 2 2 AAA domain Filament PF00038.16 gi|433590909|ref|YP_007280405.1| - 0.0081 15.6 11.9 0.0081 15.6 8.2 4.2 2 2 1 3 3 3 1 Intermediate filament protein DivIC PF04977.10 gi|433590909|ref|YP_007280405.1| - 0.011 15.2 63.7 1.7 8.2 1.1 8.6 2 2 6 8 8 8 0 Septum formation initiator Reo_sigmaC PF04582.7 gi|433590909|ref|YP_007280405.1| - 0.011 14.9 13.9 0.29 10.2 0.2 4.2 3 2 1 4 4 4 0 Reovirus sigma C capsid protein NPV_P10 PF05531.7 gi|433590909|ref|YP_007280405.1| - 0.015 15.5 22.0 3.1 8.1 0.6 6.7 2 2 2 4 4 4 0 Nucleopolyhedrovirus P10 protein GAS PF13851.1 gi|433590909|ref|YP_007280405.1| - 0.027 13.6 42.1 0.75 8.9 7.8 4.1 2 2 2 4 4 4 0 Growth-arrest specific micro-tubule binding Spectrin PF00435.16 gi|433590909|ref|YP_007280405.1| - 0.11 12.8 40.3 0.59 10.4 6.3 5.7 2 2 3 5 5 5 0 Spectrin repeat Cortex-I_coil PF09304.5 gi|433590909|ref|YP_007280405.1| - 0.13 12.3 58.4 0.49 10.4 4.7 5.8 2 2 3 5 5 5 0 Cortexillin I, coiled coil Atg14 PF10186.4 gi|433590909|ref|YP_007280405.1| - 0.18 10.7 42.0 0.23 10.3 8.6 4.1 2 2 2 4 4 4 0 UV radiation resistance protein and autophagy-related subunit 14 BLOC1_2 PF10046.4 gi|433590909|ref|YP_007280405.1| - 0.39 10.8 35.5 6.8 6.8 0.1 6.2 2 2 4 6 6 6 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Seryl_tRNA_N PF02403.17 gi|433590909|ref|YP_007280405.1| - 0.4 10.7 47.0 0.044 13.7 4.7 5.0 2 2 2 4 4 4 0 Seryl-tRNA synthetase N-terminal domain APG6 PF04111.7 gi|433590909|ref|YP_007280405.1| - 0.44 9.5 53.8 0.49 9.3 15.6 4.1 2 2 2 4 4 4 0 Autophagy protein Apg6 Fib_alpha PF08702.5 gi|433590909|ref|YP_007280405.1| - 0.53 10.4 21.4 0.2 11.7 0.8 4.3 3 1 1 4 4 4 0 Fibrinogen alpha/beta chain family Phage_GP20 PF06810.6 gi|433590909|ref|YP_007280405.1| - 0.56 9.6 38.0 0.13 11.6 6.0 4.5 2 2 2 4 4 4 0 Phage minor structural protein GP20 TMF_TATA_bd PF12325.3 gi|433590909|ref|YP_007280405.1| - 0.59 9.8 55.9 0.62 9.7 5.5 4.7 3 1 1 4 4 4 0 TATA element modulatory factor 1 TATA binding COG2 PF06148.6 gi|433590909|ref|YP_007280405.1| - 0.87 9.4 33.8 0.061 13.1 2.7 5.8 2 2 5 7 7 7 0 COG (conserved oligomeric Golgi) complex component, COG2 PLAC9 PF15205.1 gi|433590909|ref|YP_007280405.1| - 1.1 9.5 0.0 1.1 9.5 0.0 4.4 4 1 1 5 5 4 0 Placenta-specific protein 9 DUF1664 PF07889.7 gi|433590909|ref|YP_007280405.1| - 1.2 8.9 27.2 2.4 7.9 2.5 4.8 2 2 1 5 5 5 0 Protein of unknown function (DUF1664) Prefoldin_2 PF01920.15 gi|433590909|ref|YP_007280405.1| - 1.5 8.6 50.5 7.5 6.3 1.9 8.0 2 2 3 6 6 6 0 Prefoldin subunit TBPIP PF07106.8 gi|433590909|ref|YP_007280405.1| - 2.3 7.7 40.8 0.81 9.2 2.2 4.5 2 2 3 5 5 5 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Mnd1 PF03962.10 gi|433590909|ref|YP_007280405.1| - 2.9 7.5 49.2 0.5 10.0 4.1 5.3 2 2 3 5 5 5 0 Mnd1 family DUF3450 PF11932.3 gi|433590909|ref|YP_007280405.1| - 6.1 6.0 31.8 0.031 13.5 4.5 3.9 2 2 2 4 4 4 0 Protein of unknown function (DUF3450) PTA_PTB PF01515.14 gi|433590911|ref|YP_007280407.1| - 2.7e-90 302.6 0.0 4.2e-90 302.0 0.0 1.3 1 0 0 1 1 1 1 Phosphate acetyl/butaryl transferase Malic_M PF03949.10 gi|433590911|ref|YP_007280407.1| - 5.5e-68 229.2 1.6 5.5e-68 229.2 1.1 1.6 2 0 0 2 2 2 1 Malic enzyme, NAD binding domain malic PF00390.14 gi|433590911|ref|YP_007280407.1| - 5.4e-31 107.5 0.2 1.2e-28 99.9 0.1 2.4 1 1 0 1 1 1 1 Malic enzyme, N-terminal domain MFS_1 PF07690.11 gi|433590912|ref|YP_007280408.1| - 2.3e-38 131.7 62.5 3.6e-24 85.1 27.4 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily ADH_N PF08240.7 gi|433590913|ref|YP_007280409.1| - 4.7e-27 93.9 0.4 4.7e-27 93.9 0.3 1.8 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|433590913|ref|YP_007280409.1| - 2.9e-24 85.0 0.3 4e-24 84.6 0.2 1.2 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.1 gi|433590913|ref|YP_007280409.1| - 1.9e-05 25.5 0.0 3.4e-05 24.7 0.0 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase AlaDh_PNT_C PF01262.16 gi|433590913|ref|YP_007280409.1| - 0.003 17.1 0.1 0.0056 16.2 0.0 1.4 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain ELFV_dehydrog PF00208.16 gi|433590913|ref|YP_007280409.1| - 0.0062 16.1 0.0 0.009 15.6 0.0 1.1 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 2-Hacid_dh_C PF02826.14 gi|433590913|ref|YP_007280409.1| - 0.057 12.5 0.0 0.1 11.7 0.0 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.17 gi|433590914|ref|YP_007280410.1| - 7.6e-26 90.9 0.0 1.3e-25 90.2 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|433590914|ref|YP_007280410.1| - 9.2e-07 28.6 0.1 2.3e-06 27.3 0.1 1.6 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain Semialdhyde_dh PF01118.19 gi|433590914|ref|YP_007280410.1| - 0.00035 20.8 0.0 0.00064 20.0 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Gp_dh_N PF00044.19 gi|433590914|ref|YP_007280410.1| - 0.066 13.1 0.0 0.11 12.4 0.0 1.4 1 0 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.9 gi|433590914|ref|YP_007280410.1| - 0.079 12.3 1.3 0.2 10.9 0.9 1.7 1 1 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CpXC PF14353.1 gi|433590915|ref|YP_007280411.1| - 0.16 11.9 0.7 0.21 11.5 0.5 1.3 1 0 0 1 1 1 0 CpXC protein Rubredoxin PF00301.15 gi|433590915|ref|YP_007280411.1| - 0.17 11.7 3.9 0.34 10.8 0.8 2.3 1 1 1 2 2 2 0 Rubredoxin zf-nanos PF05741.8 gi|433590915|ref|YP_007280411.1| - 0.3 11.1 3.8 0.42 10.6 1.0 2.3 2 1 0 2 2 2 0 Nanos RNA binding domain Fer4_13 PF13370.1 gi|433590915|ref|YP_007280411.1| - 0.34 11.3 1.7 0.88 10.0 0.0 2.0 2 0 0 2 2 2 0 4Fe-4S single cluster domain zf-H2C2_2 PF13465.1 gi|433590915|ref|YP_007280411.1| - 0.58 10.5 2.7 2.9 8.3 0.0 2.7 3 0 0 3 3 3 0 Zinc-finger double domain Churchill PF06573.6 gi|433590915|ref|YP_007280411.1| - 0.68 9.9 3.1 1.2 9.1 1.9 1.7 1 1 0 1 1 1 0 Churchill protein NCD3G PF07562.9 gi|433590915|ref|YP_007280411.1| - 0.79 9.4 3.0 12 5.6 0.1 2.3 2 1 0 2 2 2 0 Nine Cysteines Domain of family 3 GPCR Gas_vesicle PF00741.13 gi|433590916|ref|YP_007280412.1| - 6.5e-11 41.9 8.3 8.5e-11 41.5 5.7 1.2 1 0 0 1 1 1 1 Gas vesicle protein GvpL_GvpF PF06386.6 gi|433590917|ref|YP_007280413.1| - 1.1e-61 208.5 0.0 1.3e-61 208.3 0.0 1.0 1 0 0 1 1 1 1 Gas vesicle synthesis protein GvpL/GvpF GvpK PF05121.7 gi|433590918|ref|YP_007280414.1| - 6.9e-23 80.2 4.9 8.5e-23 79.9 3.4 1.1 1 0 0 1 1 1 1 Gas vesicle protein K Jnk-SapK_ap_N PF09744.4 gi|433590918|ref|YP_007280414.1| - 0.056 13.4 1.0 0.071 13.1 0.7 1.1 1 0 0 1 1 1 0 JNK_SAPK-associated protein-1 Phage_GP20 PF06810.6 gi|433590918|ref|YP_007280414.1| - 0.065 12.6 0.3 0.083 12.3 0.2 1.1 1 0 0 1 1 1 0 Phage minor structural protein GP20 Val_tRNA-synt_C PF10458.4 gi|433590918|ref|YP_007280414.1| - 0.077 13.0 0.3 0.15 12.1 0.2 1.4 1 0 0 1 1 1 0 Valyl tRNA synthetase tRNA binding arm Halogen_Hydrol PF10112.4 gi|433590918|ref|YP_007280414.1| - 0.096 12.0 0.2 0.43 9.9 0.0 1.7 1 1 1 2 2 2 0 5-bromo-4-chloroindolyl phosphate hydrolysis protein TPD52 PF04201.10 gi|433590918|ref|YP_007280414.1| - 0.1 12.2 1.0 0.15 11.7 0.6 1.4 1 1 0 1 1 1 0 Tumour protein D52 family FlxA PF14282.1 gi|433590918|ref|YP_007280414.1| - 0.15 12.0 0.0 0.19 11.6 0.0 1.2 1 0 0 1 1 1 0 FlxA-like protein RNA12 PF10443.4 gi|433590918|ref|YP_007280414.1| - 0.16 10.4 0.3 0.18 10.2 0.2 1.1 1 0 0 1 1 1 0 RNA12 protein cwf21 PF08312.7 gi|433590918|ref|YP_007280414.1| - 0.45 10.3 7.3 55 3.7 5.0 2.4 1 1 0 1 1 1 0 cwf21 domain Gas_vesicle PF00741.13 gi|433590919|ref|YP_007280415.1| - 7.4e-14 51.3 4.1 1.1e-13 50.8 2.9 1.2 1 0 0 1 1 1 1 Gas vesicle protein AflR PF08493.5 gi|433590920|ref|YP_007280416.1| - 0.024 13.6 0.3 0.024 13.6 0.2 1.5 2 0 0 2 2 2 0 Aflatoxin regulatory protein HSP20 PF00011.16 gi|433590921|ref|YP_007280417.1| - 2.8e-05 23.9 0.2 0.023 14.5 0.0 2.2 1 1 1 2 2 2 2 Hsp20/alpha crystallin family GvpG PF05120.7 gi|433590922|ref|YP_007280418.1| - 8.4e-06 25.5 0.6 1e-05 25.2 0.4 1.2 1 0 0 1 1 1 1 Gas vesicle protein G SHOCT PF09851.4 gi|433590922|ref|YP_007280418.1| - 1.1 8.8 7.1 0.65 9.5 2.3 2.4 2 0 0 2 2 2 0 Short C-terminal domain GvpL_GvpF PF06386.6 gi|433590923|ref|YP_007280419.1| - 2.2e-50 171.5 3.1 2.4e-31 109.2 0.2 2.0 1 1 1 2 2 2 2 Gas vesicle synthesis protein GvpL/GvpF Gas_vesicle PF00741.13 gi|433590924|ref|YP_007280420.1| - 7.9e-18 64.0 8.0 1.1e-17 63.6 5.5 1.2 1 0 0 1 1 1 1 Gas vesicle protein PhoU_div PF01865.11 gi|433590924|ref|YP_007280420.1| - 0.047 12.8 0.3 0.064 12.4 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function DUF47 AAA_5 PF07728.9 gi|433590925|ref|YP_007280421.1| - 1.9e-15 56.7 0.0 2.3e-14 53.3 0.0 2.2 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_25 PF13481.1 gi|433590925|ref|YP_007280421.1| - 5.4e-06 25.9 0.0 1.5e-05 24.4 0.0 1.8 1 0 0 1 1 1 1 AAA domain AAA PF00004.24 gi|433590925|ref|YP_007280421.1| - 0.00016 21.9 0.0 0.00031 20.9 0.0 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) IstB_IS21 PF01695.12 gi|433590925|ref|YP_007280421.1| - 0.00023 20.6 0.0 0.0004 19.8 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_3 PF07726.6 gi|433590925|ref|YP_007280421.1| - 0.00094 18.7 0.0 0.002 17.7 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activ_2 PF14532.1 gi|433590925|ref|YP_007280421.1| - 0.001 19.1 0.0 0.027 14.5 0.0 2.2 2 0 0 2 2 2 1 Sigma-54 interaction domain Sigma54_activat PF00158.21 gi|433590925|ref|YP_007280421.1| - 0.0033 16.9 0.0 0.62 9.5 0.0 2.2 2 0 0 2 2 2 1 Sigma-54 interaction domain PhoH PF02562.11 gi|433590925|ref|YP_007280421.1| - 0.0038 16.4 0.0 0.011 14.9 0.0 1.7 2 0 0 2 2 2 1 PhoH-like protein Arch_ATPase PF01637.13 gi|433590925|ref|YP_007280421.1| - 0.01 15.5 0.0 0.022 14.4 0.0 1.5 1 0 0 1 1 1 0 Archaeal ATPase IPT PF01745.11 gi|433590925|ref|YP_007280421.1| - 0.015 14.4 0.0 0.025 13.7 0.0 1.3 1 0 0 1 1 1 0 Isopentenyl transferase Zeta_toxin PF06414.7 gi|433590925|ref|YP_007280421.1| - 0.029 13.4 0.4 0.069 12.2 0.0 1.8 2 0 0 2 2 2 0 Zeta toxin ABC_tran PF00005.22 gi|433590925|ref|YP_007280421.1| - 0.055 13.7 0.0 0.092 13.0 0.0 1.5 1 0 0 1 1 1 0 ABC transporter AAA_19 PF13245.1 gi|433590925|ref|YP_007280421.1| - 0.058 13.1 0.3 0.21 11.3 0.0 2.1 2 0 0 2 2 2 0 Part of AAA domain AAA_16 PF13191.1 gi|433590925|ref|YP_007280421.1| - 0.071 13.0 0.0 0.13 12.2 0.0 1.7 1 0 0 1 1 1 0 AAA ATPase domain TIP49 PF06068.8 gi|433590925|ref|YP_007280421.1| - 0.11 11.2 0.0 0.87 8.2 0.0 2.0 2 0 0 2 2 2 0 TIP49 C-terminus GvpO PF05800.6 gi|433590926|ref|YP_007280422.1| - 4.1e-30 103.6 1.2 6.3e-30 103.0 0.4 1.5 1 1 0 1 1 1 1 Gas vesicle synthesis protein GvpO zf-SAP30 PF13866.1 gi|433590926|ref|YP_007280422.1| - 0.017 14.7 0.3 0.024 14.2 0.2 1.3 1 0 0 1 1 1 0 SAP30 zinc-finger T4_neck-protein PF11649.3 gi|433590926|ref|YP_007280422.1| - 0.089 12.0 0.4 0.12 11.6 0.3 1.2 1 0 0 1 1 1 0 Virus neck protein zf-primase PF09329.6 gi|433590926|ref|YP_007280422.1| - 0.13 11.9 0.2 0.25 10.9 0.1 1.5 1 0 0 1 1 1 0 Primase zinc finger zf-CHY PF05495.7 gi|433590928|ref|YP_007280424.1| - 1e-16 60.8 4.1 1.3e-16 60.4 2.8 1.1 1 0 0 1 1 1 1 CHY zinc finger DZR PF12773.2 gi|433590928|ref|YP_007280424.1| - 0.0077 16.0 5.3 0.021 14.6 2.5 2.2 1 1 0 1 1 1 1 Double zinc ribbon LIM PF00412.17 gi|433590928|ref|YP_007280424.1| - 0.011 15.7 0.3 0.065 13.3 0.1 2.2 1 1 1 2 2 2 0 LIM domain C1_3 PF07649.7 gi|433590928|ref|YP_007280424.1| - 0.012 15.6 3.6 0.012 15.6 2.5 2.8 2 1 0 2 2 2 0 C1-like domain zf-HC5HC2H_2 PF13832.1 gi|433590928|ref|YP_007280424.1| - 0.14 12.1 2.8 0.18 11.8 1.9 1.3 1 0 0 1 1 1 0 PHD-zinc-finger like domain zinc_ribbon_5 PF13719.1 gi|433590928|ref|YP_007280424.1| - 0.5 9.9 4.4 3.7 7.2 0.2 2.8 3 0 0 3 3 3 0 zinc-ribbon domain zf-HIT PF04438.11 gi|433590928|ref|YP_007280424.1| - 0.58 9.8 7.8 0.15 11.7 1.7 2.6 2 1 0 2 2 2 0 HIT zinc finger zf-C3HC4_3 PF13920.1 gi|433590928|ref|YP_007280424.1| - 0.77 9.4 6.8 0.41 10.3 0.2 2.3 2 0 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) zinc_ribbon_4 PF13717.1 gi|433590928|ref|YP_007280424.1| - 1.2 8.8 4.7 5.5 6.7 0.2 2.8 3 0 0 3 3 3 0 zinc-ribbon domain HypA PF01155.14 gi|433590928|ref|YP_007280424.1| - 2.5 7.8 5.8 0.29 10.8 0.3 1.9 2 0 0 2 2 2 0 Hydrogenase expression/synthesis hypA family Zn-ribbon_8 PF09723.5 gi|433590928|ref|YP_007280424.1| - 2.8 7.9 9.4 3.6 7.6 0.1 3.5 3 1 0 3 3 3 0 Zinc ribbon domain MutS_V PF00488.16 gi|433590929|ref|YP_007280425.1| - 4.4e-92 307.7 0.0 6.7e-92 307.1 0.0 1.2 1 0 0 1 1 1 1 MutS domain V MutS_III PF05192.13 gi|433590929|ref|YP_007280425.1| - 1.1e-46 159.2 3.8 4.3e-46 157.2 1.4 2.2 2 0 0 2 2 2 1 MutS domain III MutS_I PF01624.15 gi|433590929|ref|YP_007280425.1| - 3.1e-35 120.5 0.0 6.4e-35 119.6 0.0 1.5 1 0 0 1 1 1 1 MutS domain I MutS_IV PF05190.13 gi|433590929|ref|YP_007280425.1| - 1.5e-31 108.4 0.1 3.4e-31 107.2 0.0 1.7 1 0 0 1 1 1 1 MutS family domain IV MutS_II PF05188.12 gi|433590929|ref|YP_007280425.1| - 1.5e-13 51.0 0.0 8.2e-13 48.6 0.0 2.2 3 0 0 3 3 3 1 MutS domain II AAA_29 PF13555.1 gi|433590929|ref|YP_007280425.1| - 0.022 14.2 0.0 0.053 13.0 0.0 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_14 PF13173.1 gi|433590929|ref|YP_007280425.1| - 0.023 14.6 0.0 0.089 12.6 0.0 2.0 1 1 0 1 1 1 0 AAA domain AAA_23 PF13476.1 gi|433590929|ref|YP_007280425.1| - 0.061 13.6 0.0 0.21 11.8 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA PF00004.24 gi|433590929|ref|YP_007280425.1| - 0.15 12.2 0.0 0.29 11.3 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.1 gi|433590929|ref|YP_007280425.1| - 2.6 8.8 0.0 2.6 8.8 0.0 3.5 2 1 0 2 2 2 0 AAA domain SdpI PF13630.1 gi|433590930|ref|YP_007280426.1| - 0.011 15.4 4.3 0.012 15.2 3.0 1.1 1 0 0 1 1 1 0 SdpI/YhfL protein family DUF308 PF03729.8 gi|433590930|ref|YP_007280426.1| - 0.082 12.9 9.2 0.32 11.0 6.5 1.7 1 1 0 1 1 1 0 Short repeat of unknown function (DUF308) DUF998 PF06197.8 gi|433590930|ref|YP_007280426.1| - 0.16 11.3 4.6 0.17 11.1 3.2 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF998) DUF4131 PF13567.1 gi|433590930|ref|YP_007280426.1| - 0.51 9.7 3.5 0.5 9.7 2.4 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) DUF2892 PF11127.3 gi|433590930|ref|YP_007280426.1| - 1.3 8.8 6.0 1.5 8.6 4.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2892) DUF4064 PF13273.1 gi|433590930|ref|YP_007280426.1| - 1.9 8.6 4.3 9.7 6.3 0.2 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF4064) TMEM51 PF15345.1 gi|433590930|ref|YP_007280426.1| - 2.5 7.7 4.6 13 5.4 1.4 2.0 2 0 0 2 2 2 0 Transmembrane protein 51 PGPGW PF09656.5 gi|433590930|ref|YP_007280426.1| - 9.1 5.6 10.9 71 2.8 7.6 2.0 1 1 0 1 1 1 0 Putative transmembrane protein (PGPGW) DUF91 PF01939.11 gi|433590931|ref|YP_007280427.1| - 4.7e-71 238.5 0.0 5.4e-71 238.3 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF91 PLC-beta_C PF08703.5 gi|433590932|ref|YP_007280428.1| - 0.0032 17.2 1.3 0.0054 16.4 0.9 1.3 1 0 0 1 1 1 1 PLC-beta C terminal AsmA_2 PF13502.1 gi|433590932|ref|YP_007280428.1| - 0.012 14.9 1.4 0.19 11.0 0.1 2.1 1 1 1 2 2 2 0 AsmA-like C-terminal region DUF4258 PF14076.1 gi|433590932|ref|YP_007280428.1| - 0.029 14.3 0.0 2.1 8.4 0.0 2.9 3 0 0 3 3 3 0 Domain of unknown function (DUF4258) Syntaxin-6_N PF09177.6 gi|433590932|ref|YP_007280428.1| - 0.049 14.0 0.9 0.088 13.2 0.2 1.6 2 0 0 2 2 2 0 Syntaxin 6, N-terminal TAT_signal PF10518.4 gi|433590932|ref|YP_007280428.1| - 1 9.5 5.0 2 8.6 3.5 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Beta-Casp PF10996.3 gi|433590934|ref|YP_007280430.1| - 4.2e-33 113.9 0.0 8.2e-33 113.0 0.0 1.5 1 0 0 1 1 1 1 Beta-Casp domain Lactamase_B PF00753.22 gi|433590934|ref|YP_007280430.1| - 2e-23 83.0 2.1 3.5e-23 82.2 1.5 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily RMMBL PF07521.7 gi|433590934|ref|YP_007280430.1| - 8.1e-14 51.1 0.0 2.7e-13 49.5 0.0 1.9 1 0 0 1 1 1 1 RNA-metabolising metallo-beta-lactamase Lactamase_B_2 PF12706.2 gi|433590934|ref|YP_007280430.1| - 4.6e-12 45.8 0.1 1.1e-11 44.6 0.1 1.6 1 0 0 1 1 1 1 Beta-lactamase superfamily domain KH_2 PF07650.12 gi|433590934|ref|YP_007280430.1| - 1.2e-07 31.2 0.0 2e-06 27.2 0.0 2.4 2 0 0 2 2 2 1 KH domain Lactamase_B_3 PF13483.1 gi|433590934|ref|YP_007280430.1| - 5.9e-05 22.8 0.0 0.00013 21.6 0.0 1.5 1 0 0 1 1 1 1 Beta-lactamase superfamily domain KH_1 PF00013.24 gi|433590934|ref|YP_007280430.1| - 0.00068 19.2 0.1 0.0024 17.4 0.0 1.9 2 0 0 2 2 2 1 KH domain KH_4 PF13083.1 gi|433590934|ref|YP_007280430.1| - 0.0069 16.0 0.0 0.016 14.8 0.0 1.6 1 0 0 1 1 1 1 KH domain Tox-HNH-HHH PF15637.1 gi|433590934|ref|YP_007280430.1| - 0.21 11.4 1.4 14 5.4 0.2 2.4 1 1 1 2 2 2 0 HNH/Endo VII superfamily nuclease toxin with a HHH motif HATPase_c PF02518.21 gi|433590935|ref|YP_007280431.1| - 2e-21 75.8 0.0 3.6e-21 74.9 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.5 gi|433590935|ref|YP_007280431.1| - 2.5e-09 37.1 0.1 5.2e-09 36.1 0.0 1.6 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.1 gi|433590935|ref|YP_007280431.1| - 6.6e-07 29.6 0.0 2.9e-06 27.6 0.0 2.1 1 1 0 1 1 1 1 PAS domain PAS PF00989.19 gi|433590935|ref|YP_007280431.1| - 1.4e-06 28.0 0.2 4.6e-05 23.1 0.1 2.4 1 1 0 1 1 1 1 PAS fold HATPase_c_2 PF13581.1 gi|433590935|ref|YP_007280431.1| - 2.9e-06 27.0 0.0 5.5e-06 26.1 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.1 gi|433590935|ref|YP_007280431.1| - 7.6e-06 25.5 0.0 1.5e-05 24.5 0.0 1.5 1 0 0 1 1 1 1 GHKL domain PAS_8 PF13188.1 gi|433590935|ref|YP_007280431.1| - 2e-05 24.2 0.0 7.6e-05 22.4 0.0 2.0 1 0 0 1 1 1 1 PAS domain HisKA PF00512.20 gi|433590935|ref|YP_007280431.1| - 0.024 14.6 0.2 0.049 13.6 0.1 1.5 1 0 0 1 1 1 0 His Kinase A (phospho-acceptor) domain HATPase_c_3 PF13589.1 gi|433590935|ref|YP_007280431.1| - 0.036 13.7 0.0 0.066 12.8 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Nitroreductase PF00881.19 gi|433590936|ref|YP_007280432.1| - 5.6e-34 117.3 0.0 7e-34 117.0 0.0 1.1 1 0 0 1 1 1 1 Nitroreductase family HhH-GPD PF00730.20 gi|433590937|ref|YP_007280433.1| - 4.5e-18 65.5 0.0 6.8e-18 64.9 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.18 gi|433590937|ref|YP_007280433.1| - 0.00019 20.9 0.0 0.00044 19.7 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix motif EndIII_4Fe-2S PF10576.4 gi|433590937|ref|YP_007280433.1| - 0.0059 16.7 8.5 0.013 15.6 5.9 1.6 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III DUF371 PF04027.8 gi|433590938|ref|YP_007280434.1| - 1.4e-49 167.1 0.2 1.5e-49 166.9 0.1 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF371) O-antigen_lig PF13425.1 gi|433590939|ref|YP_007280435.1| - 0.24 11.3 8.8 0.93 9.4 6.1 1.8 1 1 0 1 1 1 0 O-antigen ligase like membrane protein DUF805 PF05656.9 gi|433590939|ref|YP_007280435.1| - 0.49 10.2 5.9 1.2 8.9 0.1 2.0 1 1 0 2 2 2 0 Protein of unknown function (DUF805) Form_Nir_trans PF01226.12 gi|433590939|ref|YP_007280435.1| - 3.7 6.3 9.7 0.26 10.1 2.0 1.9 2 0 0 2 2 2 0 Formate/nitrite transporter DUF4233 PF14017.1 gi|433590939|ref|YP_007280435.1| - 8.5 6.3 10.4 2.9 7.8 4.3 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF4233) Bax1-I PF01027.15 gi|433590939|ref|YP_007280435.1| - 8.6 5.9 10.5 17 4.9 7.3 1.3 1 1 0 1 1 1 0 Inhibitor of apoptosis-promoting Bax1 Phosphodiest PF01663.17 gi|433590940|ref|YP_007280436.1| - 3e-61 207.7 0.0 3.4e-61 207.5 0.0 1.0 1 0 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Sulfatase PF00884.18 gi|433590940|ref|YP_007280436.1| - 0.092 11.9 2.9 0.22 10.6 0.3 2.3 2 0 0 2 2 2 0 Sulfatase Metalloenzyme PF01676.13 gi|433590940|ref|YP_007280436.1| - 0.093 12.1 0.1 0.16 11.2 0.1 1.3 1 0 0 1 1 1 0 Metalloenzyme superfamily Pyrophosphatase PF00719.14 gi|433590942|ref|YP_007280438.1| - 4.8e-55 185.2 2.0 5.4e-55 185.1 1.4 1.0 1 0 0 1 1 1 1 Inorganic pyrophosphatase TarH PF02203.10 gi|433590942|ref|YP_007280438.1| - 0.091 12.5 0.5 0.12 12.1 0.3 1.1 1 0 0 1 1 1 0 Tar ligand binding domain homologue PadR PF03551.9 gi|433590943|ref|YP_007280439.1| - 1.1e-16 60.3 0.4 1.6e-16 59.8 0.3 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_27 PF13463.1 gi|433590943|ref|YP_007280439.1| - 2.3e-07 31.0 0.0 3e-06 27.4 0.0 2.0 2 0 0 2 2 2 1 Winged helix DNA-binding domain DUF1495 PF07381.6 gi|433590943|ref|YP_007280439.1| - 0.0051 16.4 0.0 0.0079 15.8 0.0 1.4 1 1 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) HTH_45 PF14947.1 gi|433590943|ref|YP_007280439.1| - 0.014 15.2 0.0 0.023 14.5 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix Rio2_N PF09202.6 gi|433590943|ref|YP_007280439.1| - 0.11 12.6 0.1 0.21 11.6 0.1 1.4 1 1 0 1 1 1 0 Rio2, N-terminal RVT_3 PF13456.1 gi|433590945|ref|YP_007280441.1| - 4.3e-21 74.5 0.0 6.6e-21 73.8 0.0 1.3 1 0 0 1 1 1 1 Reverse transcriptase-like RNase_H PF00075.19 gi|433590945|ref|YP_007280441.1| - 6.4e-12 45.9 0.0 1.1e-11 45.1 0.0 1.3 1 0 0 1 1 1 1 RNase H TFIIB PF00382.14 gi|433590946|ref|YP_007280442.1| - 1.7e-48 162.2 3.5 1.2e-25 89.1 0.2 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|433590946|ref|YP_007280442.1| - 1.4e-19 69.1 3.0 2.7e-19 68.2 2.1 1.5 1 0 0 1 1 1 1 TFIIB zinc-binding HTH_23 PF13384.1 gi|433590946|ref|YP_007280442.1| - 0.0081 15.7 0.4 0.59 9.8 0.0 3.3 3 0 0 3 3 3 1 Homeodomain-like domain RRN7 PF11781.3 gi|433590946|ref|YP_007280442.1| - 0.012 15.0 0.8 0.024 14.1 0.6 1.5 1 0 0 1 1 1 0 RNA polymerase I-specific transcription initiation factor Rrn7 A2L_zn_ribbon PF08792.5 gi|433590946|ref|YP_007280442.1| - 0.015 14.7 0.6 0.035 13.5 0.4 1.6 1 0 0 1 1 1 0 A2L zinc ribbon domain HARE-HTH PF05066.8 gi|433590946|ref|YP_007280442.1| - 0.021 15.1 0.1 1.5 9.2 0.1 2.4 2 0 0 2 2 2 0 HB1, ASXL, restriction endonuclease HTH domain Cyclin_N PF00134.18 gi|433590946|ref|YP_007280442.1| - 0.035 13.6 0.0 0.26 10.8 0.0 2.2 1 1 1 2 2 2 0 Cyclin, N-terminal domain PhnA_Zn_Ribbon PF08274.7 gi|433590946|ref|YP_007280442.1| - 0.071 12.8 2.0 0.16 11.7 1.4 1.5 1 0 0 1 1 1 0 PhnA Zinc-Ribbon Sigma70_r4 PF04545.11 gi|433590946|ref|YP_007280442.1| - 0.083 12.2 3.2 0.3 10.4 0.0 3.3 3 1 0 3 3 3 0 Sigma-70, region 4 Pribosyltran PF00156.22 gi|433590947|ref|YP_007280443.1| - 4.8e-22 78.0 0.1 8e-22 77.2 0.0 1.4 1 0 0 1 1 1 1 Phosphoribosyl transferase domain HTH_23 PF13384.1 gi|433590947|ref|YP_007280443.1| - 0.00063 19.3 0.0 0.0015 18.1 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_7 PF02796.10 gi|433590947|ref|YP_007280443.1| - 0.0069 16.2 0.0 0.014 15.2 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase HTH_28 PF13518.1 gi|433590947|ref|YP_007280443.1| - 0.0093 15.9 0.0 0.16 12.0 0.0 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|433590947|ref|YP_007280443.1| - 0.01 15.4 0.2 0.062 12.9 0.1 2.2 2 0 0 2 2 2 0 HTH domain GerE PF00196.14 gi|433590947|ref|YP_007280443.1| - 0.021 14.1 0.0 0.043 13.1 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family Sigma70_r4 PF04545.11 gi|433590947|ref|YP_007280443.1| - 0.04 13.2 0.0 0.08 12.2 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_31 PF13560.1 gi|433590947|ref|YP_007280443.1| - 0.047 13.8 0.1 0.11 12.7 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_24 PF13412.1 gi|433590947|ref|YP_007280443.1| - 0.055 12.8 0.0 0.11 11.8 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding PRTase_2 PF15609.1 gi|433590947|ref|YP_007280443.1| - 0.063 12.5 0.1 0.31 10.3 0.0 1.9 2 0 0 2 2 2 0 Phosphoribosyl transferase UPRTase PF14681.1 gi|433590947|ref|YP_007280443.1| - 0.1 11.7 0.0 0.16 11.1 0.0 1.2 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase HTH_38 PF13936.1 gi|433590947|ref|YP_007280443.1| - 0.12 11.9 0.1 0.59 9.7 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain MarR_2 PF12802.2 gi|433590947|ref|YP_007280443.1| - 0.13 11.9 0.0 0.46 10.2 0.0 1.9 2 0 0 2 2 2 0 MarR family ADH_N PF08240.7 gi|433590948|ref|YP_007280444.1| - 3.1e-11 43.0 0.0 4.8e-11 42.3 0.0 1.3 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|433590948|ref|YP_007280444.1| - 2e-08 33.8 0.0 3.4e-08 33.0 0.0 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Shikimate_DH PF01488.15 gi|433590948|ref|YP_007280444.1| - 0.0026 17.8 0.0 0.0042 17.1 0.0 1.2 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase adh_short PF00106.20 gi|433590948|ref|YP_007280444.1| - 0.012 15.5 0.6 0.06 13.2 0.1 2.2 2 1 0 2 2 2 0 short chain dehydrogenase Hydrolase_3 PF08282.7 gi|433590949|ref|YP_007280445.1| - 1.9e-09 37.5 0.0 0.00032 20.3 0.0 2.2 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|433590949|ref|YP_007280445.1| - 3.2e-05 24.1 0.3 0.00052 20.2 0.2 2.3 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HTH_10 PF04967.7 gi|433590950|ref|YP_007280446.1| - 5.5e-19 67.4 0.1 9.2e-19 66.7 0.1 1.4 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r3 PF04539.11 gi|433590950|ref|YP_007280446.1| - 0.0016 18.2 2.5 0.0071 16.2 0.4 2.4 2 0 0 2 2 2 1 Sigma-70 region 3 MarR_2 PF12802.2 gi|433590950|ref|YP_007280446.1| - 0.0019 17.7 0.2 0.015 14.9 0.0 2.2 2 0 0 2 2 2 1 MarR family UPF0122 PF04297.9 gi|433590950|ref|YP_007280446.1| - 0.0023 17.8 0.0 0.0047 16.9 0.0 1.4 1 0 0 1 1 1 1 Putative helix-turn-helix protein, YlxM / p13 like Sigma70_r4 PF04545.11 gi|433590950|ref|YP_007280446.1| - 0.0028 16.9 0.3 0.0063 15.8 0.2 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_24 PF13412.1 gi|433590950|ref|YP_007280446.1| - 0.0049 16.2 0.0 0.012 15.0 0.0 1.6 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding DUF4250 PF14056.1 gi|433590950|ref|YP_007280446.1| - 0.052 13.2 0.6 0.18 11.5 0.1 2.1 3 0 0 3 3 3 0 Domain of unknown function (DUF4250) HTH_AsnC-type PF13404.1 gi|433590950|ref|YP_007280446.1| - 0.058 12.9 0.2 0.15 11.6 0.2 1.7 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_30 PF13556.1 gi|433590950|ref|YP_007280446.1| - 0.089 12.3 0.0 0.25 10.9 0.0 1.7 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain HTH_11 PF08279.7 gi|433590950|ref|YP_007280446.1| - 0.13 11.9 0.1 0.49 10.0 0.0 2.0 2 0 0 2 2 2 0 HTH domain DHDPS PF00701.17 gi|433590951|ref|YP_007280447.1| - 1.2e-73 247.2 0.0 1.5e-73 246.9 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family PEP_mutase PF13714.1 gi|433590951|ref|YP_007280447.1| - 0.015 14.5 0.1 0.098 11.8 0.0 2.0 1 1 1 2 2 2 0 Phosphoenolpyruvate phosphomutase ThiG PF05690.9 gi|433590951|ref|YP_007280447.1| - 0.094 11.7 0.1 0.24 10.4 0.0 1.6 2 0 0 2 2 2 0 Thiazole biosynthesis protein ThiG Colicin_V PF02674.11 gi|433590953|ref|YP_007280449.1| - 0.42 10.4 5.6 0.2 11.4 1.1 1.9 1 1 1 2 2 2 0 Colicin V production protein HAD_2 PF13419.1 gi|433590954|ref|YP_007280450.1| - 5.8e-14 52.7 0.1 3.4e-12 46.9 0.1 2.0 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|433590954|ref|YP_007280450.1| - 3e-08 34.3 0.0 1.6e-05 25.3 0.0 2.1 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|433590954|ref|YP_007280450.1| - 1.6e-07 30.9 0.0 4e-07 29.6 0.0 1.6 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.2 gi|433590954|ref|YP_007280450.1| - 0.0088 16.2 0.0 0.013 15.7 0.0 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase CTP_transf_2 PF01467.21 gi|433590954|ref|YP_007280450.1| - 0.12 12.4 0.0 0.16 12.0 0.0 1.2 1 0 0 1 1 1 0 Cytidylyltransferase Pantoate_transf PF02548.10 gi|433590956|ref|YP_007280452.1| - 5.3e-105 350.2 0.2 5.9e-105 350.0 0.1 1.0 1 0 0 1 1 1 1 Ketopantoate hydroxymethyltransferase PEP_mutase PF13714.1 gi|433590956|ref|YP_007280452.1| - 8.2e-06 25.2 1.6 2.1e-05 23.8 1.0 1.7 1 1 0 1 1 1 1 Phosphoenolpyruvate phosphomutase Abhydrolase_6 PF12697.2 gi|433590958|ref|YP_007280454.1| - 3.5e-33 115.3 8.7 4.1e-33 115.1 6.0 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|433590958|ref|YP_007280454.1| - 6.1e-15 55.2 0.6 1.2e-14 54.2 0.4 1.5 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|433590958|ref|YP_007280454.1| - 6.7e-15 55.2 1.2 1.5e-10 41.0 0.0 2.1 1 1 0 2 2 2 2 alpha/beta hydrolase fold Abhydrolase_4 PF08386.5 gi|433590958|ref|YP_007280454.1| - 0.00028 20.7 0.0 0.0011 18.8 0.0 2.0 2 1 0 2 2 2 1 TAP-like protein AAA PF00004.24 gi|433590960|ref|YP_007280456.1| - 1.6e-100 332.5 0.0 1.7e-49 167.3 0.0 2.3 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.13 gi|433590960|ref|YP_007280456.1| - 3.6e-23 81.3 0.1 3.6e-22 78.0 0.1 2.6 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), N-terminal domain AAA_2 PF07724.9 gi|433590960|ref|YP_007280456.1| - 1.1e-16 61.1 0.1 6e-08 32.7 0.0 2.5 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) CDC48_2 PF02933.12 gi|433590960|ref|YP_007280456.1| - 1.3e-15 56.7 0.1 4.2e-15 55.1 0.1 1.9 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), domain 2 RuvB_N PF05496.7 gi|433590960|ref|YP_007280456.1| - 1.5e-15 56.8 0.0 1.2e-07 31.0 0.0 2.6 2 0 0 2 2 2 2 Holliday junction DNA helicase ruvB N-terminus AAA_16 PF13191.1 gi|433590960|ref|YP_007280456.1| - 8.7e-15 55.1 0.0 1.3e-07 31.7 0.0 3.0 2 1 0 2 2 2 2 AAA ATPase domain AAA_17 PF13207.1 gi|433590960|ref|YP_007280456.1| - 9.1e-12 45.8 0.4 0.00021 22.0 0.1 3.0 2 1 0 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|433590960|ref|YP_007280456.1| - 1.4e-11 44.6 0.2 0.0007 19.7 0.0 3.9 2 2 1 3 3 3 2 AAA domain AAA_33 PF13671.1 gi|433590960|ref|YP_007280456.1| - 2.3e-11 43.7 0.0 6.8e-05 22.7 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_5 PF07728.9 gi|433590960|ref|YP_007280456.1| - 1.2e-10 41.3 1.0 0.00053 19.7 0.0 4.5 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) TIP49 PF06068.8 gi|433590960|ref|YP_007280456.1| - 3.4e-10 39.2 0.0 0.0002 20.2 0.0 2.3 2 0 0 2 2 2 2 TIP49 C-terminus AAA_14 PF13173.1 gi|433590960|ref|YP_007280456.1| - 7.2e-10 38.8 0.0 0.00025 20.9 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_19 PF13245.1 gi|433590960|ref|YP_007280456.1| - 1.6e-09 37.3 0.1 0.002 17.8 0.0 2.9 2 0 0 2 2 2 2 Part of AAA domain Zeta_toxin PF06414.7 gi|433590960|ref|YP_007280456.1| - 4.4e-09 35.7 0.0 0.00087 18.4 0.0 2.5 2 0 0 2 2 2 2 Zeta toxin IstB_IS21 PF01695.12 gi|433590960|ref|YP_007280456.1| - 1.2e-08 34.6 0.1 0.0012 18.3 0.0 2.3 2 0 0 2 2 2 2 IstB-like ATP binding protein RNA_helicase PF00910.17 gi|433590960|ref|YP_007280456.1| - 2e-08 34.3 0.0 0.004 17.2 0.0 2.7 2 1 0 2 2 2 2 RNA helicase DUF815 PF05673.8 gi|433590960|ref|YP_007280456.1| - 1.4e-07 30.7 0.0 0.00091 18.2 0.0 2.8 2 1 0 2 2 2 2 Protein of unknown function (DUF815) Mg_chelatase PF01078.16 gi|433590960|ref|YP_007280456.1| - 3.4e-07 29.6 0.3 0.011 14.9 0.0 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI NACHT PF05729.7 gi|433590960|ref|YP_007280456.1| - 3.9e-07 29.8 0.1 0.41 10.2 0.0 4.2 3 1 1 4 4 4 2 NACHT domain AAA_3 PF07726.6 gi|433590960|ref|YP_007280456.1| - 6.6e-07 28.9 0.0 0.012 15.1 0.0 2.8 2 1 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.1 gi|433590960|ref|YP_007280456.1| - 6.6e-07 28.9 8.7 0.074 12.4 0.1 4.4 2 2 1 4 4 4 3 AAA domain AAA_28 PF13521.1 gi|433590960|ref|YP_007280456.1| - 7.2e-07 29.3 0.0 0.018 15.0 0.0 2.7 2 0 0 2 2 2 2 AAA domain AAA_18 PF13238.1 gi|433590960|ref|YP_007280456.1| - 2e-06 28.1 0.0 0.041 14.1 0.0 2.9 2 0 0 2 2 2 2 AAA domain NB-ARC PF00931.17 gi|433590960|ref|YP_007280456.1| - 2.1e-06 26.8 0.0 0.028 13.2 0.0 2.3 2 0 0 2 2 2 2 NB-ARC domain Arch_ATPase PF01637.13 gi|433590960|ref|YP_007280456.1| - 3e-06 27.0 0.0 0.23 11.1 0.0 3.7 2 2 1 3 3 3 2 Archaeal ATPase ABC_tran PF00005.22 gi|433590960|ref|YP_007280456.1| - 3.1e-06 27.5 0.0 0.076 13.3 0.0 2.7 2 0 0 2 2 2 2 ABC transporter Sigma54_activat PF00158.21 gi|433590960|ref|YP_007280456.1| - 3.9e-06 26.4 0.0 0.18 11.2 0.0 3.6 3 1 0 3 3 3 2 Sigma-54 interaction domain PhoH PF02562.11 gi|433590960|ref|YP_007280456.1| - 4.1e-06 26.1 0.0 0.031 13.5 0.0 2.4 2 0 0 2 2 2 2 PhoH-like protein KaiC PF06745.8 gi|433590960|ref|YP_007280456.1| - 1.2e-05 24.6 0.2 0.21 10.7 0.0 3.4 2 1 1 3 3 3 2 KaiC Sigma54_activ_2 PF14532.1 gi|433590960|ref|YP_007280456.1| - 2.9e-05 24.1 0.0 0.2 11.7 0.0 2.8 3 0 0 3 3 2 2 Sigma-54 interaction domain DUF2075 PF09848.4 gi|433590960|ref|YP_007280456.1| - 3.5e-05 22.9 0.0 0.14 11.0 0.0 2.3 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) AAA_11 PF13086.1 gi|433590960|ref|YP_007280456.1| - 4e-05 23.2 0.0 0.24 10.9 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_24 PF13479.1 gi|433590960|ref|YP_007280456.1| - 5.3e-05 22.9 0.0 0.065 12.8 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_30 PF13604.1 gi|433590960|ref|YP_007280456.1| - 8.9e-05 22.1 0.0 0.2 11.2 0.0 2.6 2 0 0 2 2 2 2 AAA domain UPF0079 PF02367.12 gi|433590960|ref|YP_007280456.1| - 0.00022 20.8 0.0 0.35 10.5 0.0 2.4 2 0 0 2 2 2 2 Uncharacterised P-loop hydrolase UPF0079 NTPase_1 PF03266.10 gi|433590960|ref|YP_007280456.1| - 0.00028 20.6 0.5 0.51 10.0 0.0 3.5 2 2 1 3 3 3 1 NTPase Parvo_NS1 PF01057.12 gi|433590960|ref|YP_007280456.1| - 0.00035 19.5 0.1 0.51 9.1 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 Bac_DnaA PF00308.13 gi|433590960|ref|YP_007280456.1| - 0.00051 19.7 0.0 0.23 11.0 0.0 2.7 2 0 0 2 2 2 1 Bacterial dnaA protein T2SE PF00437.15 gi|433590960|ref|YP_007280456.1| - 0.00061 18.7 0.0 0.51 9.1 0.0 2.4 2 0 0 2 2 2 2 Type II/IV secretion system protein ATP-synt_ab PF00006.20 gi|433590960|ref|YP_007280456.1| - 0.0027 17.2 0.0 0.89 9.0 0.0 2.8 2 1 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain ResIII PF04851.10 gi|433590960|ref|YP_007280456.1| - 0.0057 16.5 0.0 2.1 8.1 0.0 2.6 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit KAP_NTPase PF07693.9 gi|433590960|ref|YP_007280456.1| - 0.023 13.6 0.0 2.3 7.1 0.0 2.8 2 1 0 2 2 2 0 KAP family P-loop domain AFG1_ATPase PF03969.11 gi|433590960|ref|YP_007280456.1| - 0.024 13.4 0.0 4.1 6.1 0.0 2.7 2 0 0 2 2 2 0 AFG1-like ATPase SKI PF01202.17 gi|433590960|ref|YP_007280456.1| - 0.039 13.8 0.0 6.1 6.6 0.0 2.5 2 0 0 2 2 2 0 Shikimate kinase DEAD PF00270.24 gi|433590960|ref|YP_007280456.1| - 0.047 13.1 1.4 19 4.7 0.1 3.6 2 2 1 4 4 4 0 DEAD/DEAH box helicase KTI12 PF08433.5 gi|433590960|ref|YP_007280456.1| - 0.048 12.8 0.0 8.1 5.5 0.0 2.3 2 0 0 2 2 2 0 Chromatin associated protein KTI12 Torsin PF06309.6 gi|433590960|ref|YP_007280456.1| - 0.091 12.6 0.0 4.9 7.0 0.0 2.4 2 0 0 2 2 2 0 Torsin Vps4_C PF09336.5 gi|433590960|ref|YP_007280456.1| - 0.11 12.4 0.0 12 5.9 0.0 3.1 2 0 0 2 2 2 0 Vps4 C terminal oligomerisation domain PIF1 PF05970.9 gi|433590960|ref|YP_007280456.1| - 0.13 11.2 0.0 8.7 5.1 0.0 2.6 3 0 0 3 3 3 0 PIF1-like helicase Viral_helicase1 PF01443.13 gi|433590960|ref|YP_007280456.1| - 0.13 11.7 0.0 13 5.2 0.0 2.2 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase HJURP_C PF12347.3 gi|433590960|ref|YP_007280456.1| - 0.22 11.1 3.3 0.21 11.2 0.5 2.2 2 0 0 2 2 2 0 Holliday junction regulator protein family C-terminal repeat Cytidylate_kin2 PF13189.1 gi|433590960|ref|YP_007280456.1| - 0.28 11.0 1.6 18 5.1 0.0 2.8 3 0 0 3 3 3 0 Cytidylate kinase-like family MFS_1 PF07690.11 gi|433590961|ref|YP_007280457.1| - 1e-29 103.4 52.5 1.8e-28 99.2 31.3 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily AhpC-TSA PF00578.16 gi|433590962|ref|YP_007280458.1| - 1.1e-31 109.1 0.0 1.3e-31 108.8 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|433590962|ref|YP_007280458.1| - 9.9e-17 60.8 0.0 1.2e-16 60.5 0.0 1.1 1 0 0 1 1 1 1 Redoxin DUF899 PF05988.7 gi|433590962|ref|YP_007280458.1| - 1.2e-05 24.9 0.0 1.4e-05 24.6 0.0 1.2 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF899) SCO1-SenC PF02630.9 gi|433590962|ref|YP_007280458.1| - 0.0021 17.6 0.0 0.0067 16.0 0.0 1.7 1 1 0 1 1 1 1 SCO1/SenC Fibrinogen_aC PF12160.3 gi|433590962|ref|YP_007280458.1| - 0.076 12.4 0.0 0.17 11.3 0.0 1.6 1 0 0 1 1 1 0 Fibrinogen alpha C domain AhpC-TSA_2 PF13911.1 gi|433590962|ref|YP_007280458.1| - 0.13 12.2 0.0 0.26 11.2 0.0 1.4 1 1 1 2 2 2 0 AhpC/TSA antioxidant enzyme Sld5 PF05916.6 gi|433590963|ref|YP_007280459.1| - 0.016 15.4 0.0 0.025 14.8 0.0 1.2 1 0 0 1 1 1 0 GINS complex protein Metal_resist PF13801.1 gi|433590963|ref|YP_007280459.1| - 0.13 12.2 1.5 0.32 10.9 1.0 1.8 1 0 0 1 1 1 0 Heavy-metal resistance DUF605 PF04652.11 gi|433590963|ref|YP_007280459.1| - 0.27 10.6 6.1 0.3 10.4 4.2 1.3 1 0 0 1 1 1 0 Vta1 like DNA_primase_S PF01896.14 gi|433590964|ref|YP_007280460.1| - 4.2e-22 78.5 0.0 1e-21 77.2 0.0 1.6 1 1 0 1 1 1 1 Eukaryotic and archaeal DNA primase small subunit FmdE PF02663.9 gi|433590965|ref|YP_007280461.1| - 5.4e-06 26.3 0.0 9.1e-06 25.5 0.0 1.4 1 1 0 1 1 1 1 FmdE, Molybdenum formylmethanofuran dehydrogenase operon zf-HC2 PF13490.1 gi|433590965|ref|YP_007280461.1| - 0.063 13.2 0.0 0.11 12.5 0.0 1.4 1 0 0 1 1 1 0 Putative zinc-finger E1-E2_ATPase PF00122.15 gi|433590966|ref|YP_007280462.1| - 4.9e-50 169.7 0.8 1e-49 168.6 0.2 1.8 2 0 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.21 gi|433590966|ref|YP_007280462.1| - 5.9e-43 147.7 10.8 5.9e-43 147.7 7.5 2.0 2 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|433590966|ref|YP_007280462.1| - 2.1e-14 54.1 0.4 6.1e-14 52.6 0.1 2.0 2 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|433590966|ref|YP_007280462.1| - 0.0013 18.3 1.2 0.044 13.3 0.6 2.2 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Fimbrial_PilY2 PF14481.1 gi|433590966|ref|YP_007280462.1| - 0.0086 15.4 0.1 0.19 11.1 0.0 2.7 2 0 0 2 2 2 1 Type 4 fimbrial biogenesis protein PilY2 Hydrolase_6 PF13344.1 gi|433590966|ref|YP_007280462.1| - 0.0096 15.7 0.1 0.064 13.1 0.0 2.5 3 1 1 4 4 4 1 Haloacid dehalogenase-like hydrolase Mannitol_dh PF01232.18 gi|433590966|ref|YP_007280462.1| - 0.12 12.3 0.3 0.33 10.9 0.1 1.8 2 0 0 2 2 2 0 Mannitol dehydrogenase Rossmann domain HMA PF00403.21 gi|433590967|ref|YP_007280463.1| - 1.8e-10 40.8 0.1 2e-10 40.6 0.0 1.0 1 0 0 1 1 1 1 Heavy-metal-associated domain Tox-PL-2 PF15643.1 gi|433590967|ref|YP_007280463.1| - 0.026 14.5 0.0 0.027 14.4 0.0 1.1 1 0 0 1 1 1 0 Papain fold toxin 2 HTH_20 PF12840.2 gi|433590968|ref|YP_007280464.1| - 5.6e-15 54.8 0.7 1.3e-14 53.7 0.5 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|433590968|ref|YP_007280464.1| - 3.6e-06 26.5 0.2 2e-05 24.1 0.1 2.1 1 1 0 1 1 1 1 Bacterial regulatory protein, arsR family PqqD PF05402.7 gi|433590968|ref|YP_007280464.1| - 0.00013 21.8 0.4 0.057 13.4 0.0 2.5 2 0 0 2 2 2 1 Coenzyme PQQ synthesis protein D (PqqD) HTH_12 PF08461.5 gi|433590968|ref|YP_007280464.1| - 0.00022 20.8 1.1 0.00036 20.1 0.1 1.9 2 0 0 2 2 2 1 Ribonuclease R winged-helix domain TFIIE_alpha PF02002.12 gi|433590968|ref|YP_007280464.1| - 0.012 15.0 0.0 0.02 14.3 0.0 1.5 1 0 0 1 1 1 0 TFIIE alpha subunit PadR PF03551.9 gi|433590968|ref|YP_007280464.1| - 0.023 14.4 0.1 0.063 13.0 0.0 1.7 2 0 0 2 2 2 0 Transcriptional regulator PadR-like family DUF2383 PF09537.5 gi|433590968|ref|YP_007280464.1| - 0.032 14.4 0.3 8.3 6.7 0.0 2.7 1 1 2 3 3 3 0 Domain of unknown function (DUF2383) HTH_IclR PF09339.5 gi|433590968|ref|YP_007280464.1| - 0.047 13.2 0.7 0.24 11.0 0.5 2.1 1 1 0 1 1 1 0 IclR helix-turn-helix domain DUF742 PF05331.6 gi|433590968|ref|YP_007280464.1| - 0.055 13.0 0.0 0.14 11.7 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF742) HTH_23 PF13384.1 gi|433590968|ref|YP_007280464.1| - 0.057 13.0 0.3 2.4 7.9 0.1 2.5 2 0 0 2 2 2 0 Homeodomain-like domain Myb_DNA-bind_4 PF13837.1 gi|433590968|ref|YP_007280464.1| - 0.062 13.4 0.0 0.13 12.3 0.0 1.6 2 0 0 2 2 2 0 Myb/SANT-like DNA-binding domain PPDK_N PF01326.14 gi|433590968|ref|YP_007280464.1| - 0.083 11.9 0.2 0.11 11.5 0.1 1.2 1 0 0 1 1 1 0 Pyruvate phosphate dikinase, PEP/pyruvate binding domain TrmB PF01978.14 gi|433590968|ref|YP_007280464.1| - 0.085 12.5 0.0 0.2 11.4 0.0 1.7 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|433590968|ref|YP_007280464.1| - 0.094 12.1 0.0 0.24 10.8 0.0 1.7 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Hydrolase PF00702.21 gi|433590968|ref|YP_007280464.1| - 0.095 13.0 0.5 0.14 12.5 0.3 1.4 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase DUF3253 PF11625.3 gi|433590968|ref|YP_007280464.1| - 0.16 11.8 0.8 0.29 11.0 0.1 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3253) Acyl-CoA_dh_N PF02771.11 gi|433590968|ref|YP_007280464.1| - 0.22 12.1 2.5 0.61 10.6 0.6 2.0 1 1 1 2 2 2 0 Acyl-CoA dehydrogenase, N-terminal domain KfrA_N PF11740.3 gi|433590968|ref|YP_007280464.1| - 0.26 11.7 3.6 1 9.7 2.5 1.8 1 1 0 1 1 1 0 Plasmid replication region DNA-binding N-term Acetyltransf_10 PF13673.1 gi|433590969|ref|YP_007280465.1| - 1.2e-13 51.2 0.0 1.5e-13 50.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|433590969|ref|YP_007280465.1| - 1.1e-12 47.7 0.0 2.4e-12 46.6 0.0 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|433590969|ref|YP_007280465.1| - 2.1e-11 43.8 0.1 3.5e-11 43.1 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|433590969|ref|YP_007280465.1| - 8.3e-09 35.0 0.0 1.4e-08 34.3 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_8 PF13523.1 gi|433590969|ref|YP_007280465.1| - 0.00014 21.7 0.1 0.0002 21.2 0.1 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|433590969|ref|YP_007280465.1| - 0.00019 21.3 0.0 0.00036 20.5 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|433590969|ref|YP_007280465.1| - 0.0024 17.7 0.0 0.0091 15.8 0.0 1.9 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|433590969|ref|YP_007280465.1| - 0.1 12.7 0.0 0.15 12.2 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain NTS_2 PF15448.1 gi|433590969|ref|YP_007280465.1| - 0.47 10.7 3.6 1.2 9.4 2.5 1.7 1 0 0 1 1 1 0 N-terminal segments of P. falciparum erythrocyte membrane protein Archease PF01951.11 gi|433590970|ref|YP_007280466.1| - 7.2e-28 97.2 0.0 8.1e-28 97.0 0.0 1.0 1 0 0 1 1 1 1 Archease protein family (MTH1598/TM1083) RtcB PF01139.12 gi|433590971|ref|YP_007280467.1| - 1.9e-141 471.8 0.4 2.3e-118 395.8 0.1 2.2 2 0 0 2 2 2 2 tRNA-splicing ligase RtcB Intein_splicing PF14890.1 gi|433590971|ref|YP_007280467.1| - 5.1e-08 32.1 0.0 5.6e-05 22.1 0.0 2.3 2 0 0 2 2 2 2 Intein splicing domain Hint PF01079.15 gi|433590971|ref|YP_007280467.1| - 0.006 15.8 0.0 0.013 14.7 0.0 1.5 1 0 0 1 1 1 1 Hint module Mus7 PF09462.5 gi|433590971|ref|YP_007280467.1| - 0.089 11.6 0.1 0.14 11.0 0.1 1.2 1 0 0 1 1 1 0 Mus7/MMS22 family Mob_synth_C PF06463.8 gi|433590973|ref|YP_007280469.1| - 8.1e-32 109.6 0.0 1.3e-31 108.9 0.0 1.3 1 0 0 1 1 1 1 Molybdenum Cofactor Synthesis C Radical_SAM PF04055.16 gi|433590973|ref|YP_007280469.1| - 3.2e-24 85.9 0.0 6.3e-24 85.0 0.0 1.5 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|433590973|ref|YP_007280469.1| - 4e-08 33.2 0.0 8.9e-08 32.1 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|433590973|ref|YP_007280469.1| - 7.5e-07 29.3 0.0 1.7e-06 28.2 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Cytochrome_C7 PF14522.1 gi|433590973|ref|YP_007280469.1| - 0.054 13.1 0.4 10 5.8 0.0 2.3 2 0 0 2 2 2 0 Cytochrome c7 Cytochrom_C PF00034.16 gi|433590973|ref|YP_007280469.1| - 0.1 13.4 0.0 13 6.7 0.0 2.7 3 0 0 3 3 3 0 Cytochrome c Ribosomal_S13 PF00416.17 gi|433590974|ref|YP_007280470.1| - 5.6e-35 120.0 1.6 7.3e-35 119.6 1.1 1.1 1 0 0 1 1 1 1 Ribosomal protein S13/S18 FbpA PF05833.6 gi|433590974|ref|YP_007280470.1| - 0.011 14.2 0.2 0.012 14.1 0.1 1.2 1 0 0 1 1 1 0 Fibronectin-binding protein A N-terminus (FbpA) S4 PF01479.20 gi|433590975|ref|YP_007280471.1| - 2.6e-14 52.3 1.6 4.6e-14 51.5 0.1 1.9 2 0 0 2 2 2 1 S4 domain Ribosomal_S4 PF00163.14 gi|433590975|ref|YP_007280471.1| - 0.0018 18.5 1.2 0.0034 17.7 0.3 1.8 1 1 1 2 2 2 1 Ribosomal protein S4/S9 N-terminal domain Ribosomal_S11 PF00411.14 gi|433590976|ref|YP_007280472.1| - 3e-42 143.2 0.5 3.4e-42 143.0 0.3 1.0 1 0 0 1 1 1 1 Ribosomal protein S11 RNA_pol_A_bac PF01000.21 gi|433590977|ref|YP_007280473.1| - 9.3e-21 74.0 0.0 2.9e-20 72.5 0.0 1.8 1 1 0 1 1 1 1 RNA polymerase Rpb3/RpoA insert domain RNA_pol_L PF01193.19 gi|433590977|ref|YP_007280473.1| - 4.5e-14 51.3 0.0 5.5e-14 51.0 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Ribosomal_L18e PF00828.14 gi|433590978|ref|YP_007280474.1| - 2.9e-13 50.3 0.0 3.7e-13 49.9 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L18e/L15 Ribosomal_L13 PF00572.13 gi|433590979|ref|YP_007280475.1| - 7.2e-23 81.0 0.0 9.1e-23 80.7 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L13 Ribosomal_S9 PF00380.14 gi|433590980|ref|YP_007280476.1| - 3.6e-37 127.3 0.1 4e-37 127.1 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S9/S16 tRNA_anti-codon PF01336.20 gi|433590980|ref|YP_007280476.1| - 0.095 12.5 0.0 0.18 11.6 0.0 1.5 1 0 0 1 1 1 0 OB-fold nucleic acid binding domain RNA_pol_N PF01194.12 gi|433590981|ref|YP_007280477.1| - 8.9e-30 102.5 0.1 9.7e-30 102.3 0.1 1.0 1 0 0 1 1 1 1 RNA polymerases N / 8 kDa subunit RNA_pol_Rpb6 PF01192.17 gi|433590982|ref|YP_007280478.1| - 1.6e-18 66.1 0.0 1.7e-18 66.0 0.0 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb6 Enolase_C PF00113.17 gi|433590983|ref|YP_007280479.1| - 4.4e-75 252.4 0.2 5.9e-75 251.9 0.2 1.1 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.11 gi|433590983|ref|YP_007280479.1| - 1.5e-37 128.4 0.1 3e-37 127.5 0.1 1.5 1 0 0 1 1 1 1 Enolase, N-terminal domain MAAL_C PF07476.6 gi|433590983|ref|YP_007280479.1| - 7.4e-05 21.7 0.1 0.00015 20.7 0.1 1.4 1 0 0 1 1 1 1 Methylaspartate ammonia-lyase C-terminus MR_MLE PF01188.16 gi|433590983|ref|YP_007280479.1| - 0.00018 21.9 0.1 0.00054 20.4 0.1 1.9 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain MR_MLE_C PF13378.1 gi|433590983|ref|YP_007280479.1| - 0.001 19.0 1.1 0.0038 17.1 0.0 2.5 3 0 0 3 3 3 1 Enolase C-terminal domain-like Ribosomal_S2 PF00318.15 gi|433590984|ref|YP_007280480.1| - 2.2e-37 128.3 0.0 7.1e-19 67.8 0.2 2.0 1 1 1 2 2 2 2 Ribosomal protein S2 HTH_20 PF12840.2 gi|433590985|ref|YP_007280481.1| - 0.026 14.3 1.9 0.03 14.1 0.4 1.9 2 1 0 2 2 2 0 Helix-turn-helix domain Aldolase_2 PF10120.4 gi|433590986|ref|YP_007280482.1| - 9.6e-43 145.4 0.0 1.3e-42 145.0 0.0 1.2 1 0 0 1 1 1 1 Putative aldolase HTH_3 PF01381.17 gi|433590986|ref|YP_007280482.1| - 8e-07 28.8 0.1 1.6e-06 27.8 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix HTH_23 PF13384.1 gi|433590986|ref|YP_007280482.1| - 7.9e-06 25.3 0.0 3.1e-05 23.4 0.0 2.0 1 0 0 1 1 1 1 Homeodomain-like domain MarR_2 PF12802.2 gi|433590986|ref|YP_007280482.1| - 2.8e-05 23.7 0.5 0.00052 19.6 0.1 2.6 2 0 0 2 2 2 1 MarR family HTH_38 PF13936.1 gi|433590986|ref|YP_007280482.1| - 4.2e-05 23.0 0.1 0.00014 21.3 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_31 PF13560.1 gi|433590986|ref|YP_007280482.1| - 0.00022 21.3 0.5 0.00022 21.3 0.3 2.5 3 1 0 3 3 2 1 Helix-turn-helix domain Sigma70_r4 PF04545.11 gi|433590986|ref|YP_007280482.1| - 0.00066 18.9 0.0 0.0021 17.3 0.0 1.8 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_37 PF13744.1 gi|433590986|ref|YP_007280482.1| - 0.00079 19.1 0.0 0.0022 17.7 0.0 1.7 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|433590986|ref|YP_007280482.1| - 0.00088 18.6 0.0 0.0021 17.4 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding RepB PF07506.6 gi|433590986|ref|YP_007280482.1| - 0.003 17.4 0.0 0.0071 16.2 0.0 1.6 1 0 0 1 1 1 1 RepB plasmid partitioning protein HTH_28 PF13518.1 gi|433590986|ref|YP_007280482.1| - 0.0073 16.2 0.0 0.031 14.2 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_19 PF12844.2 gi|433590986|ref|YP_007280482.1| - 0.0083 16.1 0.0 0.021 14.8 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.1 gi|433590986|ref|YP_007280482.1| - 0.016 15.4 0.0 0.033 14.4 0.0 1.5 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain TetR_N PF00440.18 gi|433590986|ref|YP_007280482.1| - 0.018 14.6 0.1 0.073 12.7 0.0 2.1 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family Sigma70_r4_2 PF08281.7 gi|433590986|ref|YP_007280482.1| - 0.027 13.9 0.0 0.068 12.6 0.0 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_11 PF08279.7 gi|433590986|ref|YP_007280482.1| - 0.038 13.6 0.0 0.076 12.6 0.0 1.5 1 0 0 1 1 1 0 HTH domain DUF3486 PF11985.3 gi|433590986|ref|YP_007280482.1| - 0.058 13.4 0.0 0.6 10.1 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3486) KorB PF08535.5 gi|433590986|ref|YP_007280482.1| - 0.06 13.5 0.1 0.46 10.6 0.0 2.3 3 0 0 3 3 2 0 KorB domain HTH_5 PF01022.15 gi|433590986|ref|YP_007280482.1| - 0.14 11.8 0.0 0.34 10.6 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family BPD_transp_1 PF00528.17 gi|433590987|ref|YP_007280483.1| - 1.1e-08 34.8 8.0 1.1e-08 34.8 5.6 1.5 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF3619 PF12279.3 gi|433590987|ref|YP_007280483.1| - 0.04 13.9 0.6 1.3 9.1 0.0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3619) Wzy_C PF04932.10 gi|433590987|ref|YP_007280483.1| - 4.6 7.0 7.8 4.9 6.9 1.4 2.7 3 0 0 3 3 3 0 O-Antigen ligase ABC_tran PF00005.22 gi|433590988|ref|YP_007280484.1| - 3.2e-28 98.7 0.0 4.3e-28 98.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|433590988|ref|YP_007280484.1| - 5.2e-09 36.4 0.0 9.1e-05 22.5 0.0 2.1 1 1 0 2 2 2 2 AAA domain DUF258 PF03193.11 gi|433590988|ref|YP_007280484.1| - 0.00014 21.1 0.0 0.00019 20.6 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_10 PF12846.2 gi|433590988|ref|YP_007280484.1| - 0.00019 20.9 0.1 0.2 11.0 0.0 2.1 2 0 0 2 2 2 2 AAA-like domain AAA_29 PF13555.1 gi|433590988|ref|YP_007280484.1| - 0.00047 19.6 0.0 0.00086 18.7 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|433590988|ref|YP_007280484.1| - 0.00096 19.1 3.3 0.0036 17.3 2.3 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.1 gi|433590988|ref|YP_007280484.1| - 0.0015 18.9 0.0 0.002 18.4 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|433590988|ref|YP_007280484.1| - 0.0038 17.3 0.0 0.043 13.9 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_15 PF13175.1 gi|433590988|ref|YP_007280484.1| - 0.0076 15.3 0.0 0.043 12.8 0.0 1.8 2 0 0 2 2 2 1 AAA ATPase domain AAA_25 PF13481.1 gi|433590988|ref|YP_007280484.1| - 0.0078 15.6 0.5 0.021 14.2 0.1 1.8 2 0 0 2 2 2 1 AAA domain PduV-EutP PF10662.4 gi|433590988|ref|YP_007280484.1| - 0.013 15.0 0.0 0.027 13.9 0.0 1.5 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation AAA_30 PF13604.1 gi|433590988|ref|YP_007280484.1| - 0.015 14.8 0.0 0.032 13.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain UPF0079 PF02367.12 gi|433590988|ref|YP_007280484.1| - 0.02 14.5 0.1 0.032 13.8 0.1 1.2 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 NACHT PF05729.7 gi|433590988|ref|YP_007280484.1| - 0.16 11.5 0.1 0.35 10.5 0.1 1.5 1 0 0 1 1 1 0 NACHT domain SbcCD_C PF13558.1 gi|433590988|ref|YP_007280484.1| - 0.31 10.9 1.8 2.3 8.2 0.0 2.8 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit AAA_19 PF13245.1 gi|433590988|ref|YP_007280484.1| - 0.55 10.0 4.8 0.42 10.4 0.1 2.9 2 1 1 3 3 3 0 Part of AAA domain Phosphonate-bd PF12974.2 gi|433590989|ref|YP_007280485.1| - 1.1e-46 159.1 0.1 1.5e-46 158.7 0.1 1.1 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein NMT1 PF09084.6 gi|433590989|ref|YP_007280485.1| - 9.6e-05 22.0 0.0 0.00018 21.1 0.0 1.4 1 0 0 1 1 1 1 NMT1/THI5 like NMT1_2 PF13379.1 gi|433590989|ref|YP_007280485.1| - 0.0045 16.4 0.0 0.0073 15.7 0.0 1.3 1 0 0 1 1 1 1 NMT1-like family SBP_bac_3 PF00497.15 gi|433590989|ref|YP_007280485.1| - 0.0094 15.2 0.0 0.015 14.5 0.0 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 GHMP_kinases_N PF00288.21 gi|433590990|ref|YP_007280486.1| - 5.1e-16 58.4 0.2 1e-15 57.4 0.1 1.6 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|433590990|ref|YP_007280486.1| - 1.2e-15 57.4 1.2 6.6e-15 55.0 0.2 2.3 2 0 0 2 2 2 1 GHMP kinases C terminal GalKase_gal_bdg PF10509.4 gi|433590990|ref|YP_007280486.1| - 0.0004 19.6 0.0 0.0012 18.1 0.0 1.9 2 0 0 2 2 2 1 Galactokinase galactose-binding signature AA_kinase PF00696.23 gi|433590991|ref|YP_007280487.1| - 5e-35 121.1 3.8 5.9e-35 120.9 2.6 1.0 1 0 0 1 1 1 1 Amino acid kinase family Glyco_hydro_35 PF01301.14 gi|433590991|ref|YP_007280487.1| - 0.12 11.7 0.0 0.15 11.3 0.0 1.1 1 0 0 1 1 1 0 Glycosyl hydrolases family 35 TrkH PF02386.11 gi|433590992|ref|YP_007280488.1| - 3.8e-50 170.4 20.7 4e-50 170.3 8.5 2.1 2 0 0 2 2 2 2 Cation transport protein DUF373 PF04123.8 gi|433590993|ref|YP_007280489.1| - 0.00057 19.0 0.1 0.00062 18.8 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF373) DUF3262 PF11660.3 gi|433590993|ref|YP_007280489.1| - 0.011 15.7 1.6 0.019 15.0 0.1 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3262) MerC PF03203.9 gi|433590993|ref|YP_007280489.1| - 0.023 15.0 0.5 0.027 14.8 0.4 1.0 1 0 0 1 1 1 0 MerC mercury resistance protein NicO PF03824.11 gi|433590993|ref|YP_007280489.1| - 0.038 13.2 0.6 0.047 13.0 0.4 1.0 1 0 0 1 1 1 0 High-affinity nickel-transport protein MrpF_PhaF PF04066.8 gi|433590993|ref|YP_007280489.1| - 0.23 11.7 3.9 0.31 11.3 2.7 1.2 1 0 0 1 1 1 0 Multiple resistance and pH regulation protein F (MrpF / PhaF) DctQ PF04290.7 gi|433590993|ref|YP_007280489.1| - 0.35 10.6 6.4 1.5 8.6 0.4 2.0 1 1 1 2 2 2 0 Tripartite ATP-independent periplasmic transporters, DctQ component TrkA_N PF02254.13 gi|433590994|ref|YP_007280490.1| - 5.6e-29 100.4 0.9 1.1e-28 99.5 0.6 1.5 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.16 gi|433590994|ref|YP_007280490.1| - 7.3e-17 60.7 0.7 3.8e-16 58.4 0.1 2.2 2 0 0 2 2 2 1 TrkA-C domain Saccharop_dh PF03435.13 gi|433590994|ref|YP_007280490.1| - 2e-06 27.0 0.2 2.6e-06 26.6 0.1 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase F420_oxidored PF03807.12 gi|433590994|ref|YP_007280490.1| - 2.7e-06 27.6 0.2 1.7e-05 25.1 0.0 2.4 2 1 1 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent XdhC_C PF13478.1 gi|433590994|ref|YP_007280490.1| - 3.3e-05 24.1 0.1 4.7e-05 23.7 0.0 1.3 1 0 0 1 1 1 1 XdhC Rossmann domain NAD_binding_7 PF13241.1 gi|433590994|ref|YP_007280490.1| - 0.00017 21.7 0.4 0.00034 20.8 0.1 1.6 2 0 0 2 2 2 1 Putative NAD(P)-binding Pyr_redox PF00070.22 gi|433590994|ref|YP_007280490.1| - 0.00021 21.6 0.1 0.01 16.2 0.0 2.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_10 PF13460.1 gi|433590994|ref|YP_007280490.1| - 0.00035 20.6 0.4 0.0019 18.2 0.2 2.0 2 0 0 2 2 2 1 NADH(P)-binding 3HCDH_N PF02737.13 gi|433590994|ref|YP_007280490.1| - 0.0018 17.9 0.0 0.0025 17.4 0.0 1.2 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NmrA PF05368.8 gi|433590994|ref|YP_007280490.1| - 0.0054 16.0 0.0 0.019 14.1 0.0 1.8 1 1 1 2 2 2 1 NmrA-like family UDPG_MGDP_dh_N PF03721.9 gi|433590994|ref|YP_007280490.1| - 0.0055 16.1 0.3 0.04 13.2 0.0 2.0 1 1 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_2 PF03446.10 gi|433590994|ref|YP_007280490.1| - 0.015 15.1 0.0 0.067 13.0 0.0 1.9 1 1 1 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase GFO_IDH_MocA PF01408.17 gi|433590994|ref|YP_007280490.1| - 0.018 15.5 0.2 0.04 14.4 0.1 1.7 1 1 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold Peripla_BP_3 PF13377.1 gi|433590994|ref|YP_007280490.1| - 0.019 14.9 0.3 0.032 14.2 0.2 1.3 1 0 0 1 1 1 0 Periplasmic binding protein-like domain 2-Hacid_dh_C PF02826.14 gi|433590994|ref|YP_007280490.1| - 0.042 13.0 0.1 0.091 11.9 0.0 1.6 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ADH_zinc_N PF00107.21 gi|433590994|ref|YP_007280490.1| - 0.075 12.5 0.0 3.1 7.3 0.0 2.2 2 0 0 2 2 2 0 Zinc-binding dehydrogenase AlaDh_PNT_C PF01262.16 gi|433590994|ref|YP_007280490.1| - 0.077 12.5 0.0 0.11 12.0 0.0 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain CPSase_L_chain PF00289.17 gi|433590994|ref|YP_007280490.1| - 0.12 12.4 0.1 0.25 11.4 0.1 1.6 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, N-terminal domain TrkH PF02386.11 gi|433590995|ref|YP_007280491.1| - 1.6e-60 204.5 21.8 5.2e-59 199.5 10.9 2.1 1 1 1 2 2 2 2 Cation transport protein Tox-WTIP PF15654.1 gi|433590996|ref|YP_007280492.1| - 4.1 7.1 5.3 8.6 6.0 3.7 1.6 1 1 0 1 1 1 0 Toxin with a conserved tryptophan and TIP tripeptide motif TrkA_N PF02254.13 gi|433590997|ref|YP_007280493.1| - 3.6e-50 168.8 9.1 2.4e-25 88.8 1.2 2.6 3 0 0 3 3 2 2 TrkA-N domain TrkA_C PF02080.16 gi|433590997|ref|YP_007280493.1| - 8.4e-30 102.1 13.2 3.1e-16 58.6 0.1 4.1 4 0 0 4 4 4 2 TrkA-C domain NAD_binding_7 PF13241.1 gi|433590997|ref|YP_007280493.1| - 8.1e-15 54.9 3.7 6e-08 32.8 0.7 2.7 2 1 0 2 2 2 2 Putative NAD(P)-binding Shikimate_DH PF01488.15 gi|433590997|ref|YP_007280493.1| - 7.4e-11 42.2 1.7 0.0002 21.4 0.1 2.5 2 0 0 2 2 2 2 Shikimate / quinate 5-dehydrogenase Saccharop_dh PF03435.13 gi|433590997|ref|YP_007280493.1| - 3.2e-08 32.9 2.4 0.00027 20.0 0.7 2.1 2 0 0 2 2 2 2 Saccharopine dehydrogenase FAD_binding_3 PF01494.14 gi|433590997|ref|YP_007280493.1| - 7.9e-07 28.4 0.2 0.014 14.4 0.0 2.5 3 0 0 3 3 3 2 FAD binding domain F420_oxidored PF03807.12 gi|433590997|ref|YP_007280493.1| - 9e-07 29.2 2.1 0.03 14.7 0.0 4.2 3 2 2 5 5 5 2 NADP oxidoreductase coenzyme F420-dependent ApbA PF02558.11 gi|433590997|ref|YP_007280493.1| - 6.4e-06 25.6 0.1 0.00013 21.4 0.1 2.8 3 0 0 3 3 3 1 Ketopantoate reductase PanE/ApbA Pyr_redox_2 PF07992.9 gi|433590997|ref|YP_007280493.1| - 9.5e-06 25.6 0.1 0.043 13.7 0.0 2.8 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.13 gi|433590997|ref|YP_007280493.1| - 1.1e-05 25.1 0.1 0.0041 16.7 0.0 2.4 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_2 PF03446.10 gi|433590997|ref|YP_007280493.1| - 6.3e-05 22.8 0.1 0.02 14.7 0.0 2.5 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase Pyr_redox PF00070.22 gi|433590997|ref|YP_007280493.1| - 0.0003 21.1 2.3 0.23 11.8 0.0 3.0 3 0 0 3 3 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_Gly3P_dh_N PF01210.18 gi|433590997|ref|YP_007280493.1| - 0.00035 20.3 0.0 0.074 12.7 0.0 2.5 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ADH_zinc_N PF00107.21 gi|433590997|ref|YP_007280493.1| - 0.0006 19.3 0.6 0.0079 15.7 0.0 3.0 3 2 0 3 3 3 1 Zinc-binding dehydrogenase UDPG_MGDP_dh_N PF03721.9 gi|433590997|ref|YP_007280493.1| - 0.0012 18.2 0.2 0.041 13.2 0.0 3.1 3 1 0 3 3 3 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Semialdhyde_dh PF01118.19 gi|433590997|ref|YP_007280493.1| - 0.0025 18.1 0.5 0.18 12.1 0.1 2.7 2 0 0 2 2 2 1 Semialdehyde dehydrogenase, NAD binding domain Pyr_redox_3 PF13738.1 gi|433590997|ref|YP_007280493.1| - 0.0046 17.0 0.2 7.1 6.6 0.0 3.1 2 1 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.16 gi|433590997|ref|YP_007280493.1| - 0.0058 16.2 0.3 1.9 8.0 0.0 2.6 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain XdhC_C PF13478.1 gi|433590997|ref|YP_007280493.1| - 0.0078 16.5 2.7 2.9 8.2 0.1 2.8 3 0 0 3 3 2 2 XdhC Rossmann domain DAO PF01266.19 gi|433590997|ref|YP_007280493.1| - 0.0092 14.9 0.6 0.068 12.0 0.2 2.3 2 0 0 2 2 2 1 FAD dependent oxidoreductase CPSase_L_chain PF00289.17 gi|433590997|ref|YP_007280493.1| - 0.018 15.1 2.7 1.6 8.8 0.0 3.6 4 0 0 4 4 4 0 Carbamoyl-phosphate synthase L chain, N-terminal domain NAD_binding_8 PF13450.1 gi|433590997|ref|YP_007280493.1| - 0.031 14.2 0.2 0.64 10.0 0.1 2.5 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain Lycopene_cycl PF05834.7 gi|433590997|ref|YP_007280493.1| - 0.099 11.5 0.0 0.21 10.4 0.0 1.6 1 0 0 1 1 1 0 Lycopene cyclase protein ThiF PF00899.16 gi|433590997|ref|YP_007280493.1| - 4 7.2 9.2 29 4.4 0.3 4.0 2 2 2 4 4 4 0 ThiF family Lactamase_B PF00753.22 gi|433590998|ref|YP_007280494.1| - 1.1e-12 48.0 1.9 1.6e-12 47.4 0.6 1.9 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|433590998|ref|YP_007280494.1| - 2.8e-07 30.2 0.4 1.1e-05 25.1 0.1 2.2 2 0 0 2 2 2 1 Beta-lactamase superfamily domain RMMBL PF07521.7 gi|433590998|ref|YP_007280494.1| - 2.2e-05 24.1 1.9 3.8e-05 23.4 0.4 2.1 2 0 0 2 2 2 1 RNA-metabolising metallo-beta-lactamase DUF1413 PF07205.6 gi|433590998|ref|YP_007280494.1| - 0.01 15.3 0.1 0.28 10.7 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF1413) polyprenyl_synt PF00348.12 gi|433590999|ref|YP_007280495.1| - 2.6e-60 203.4 0.9 3.5e-60 203.0 0.6 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase tRNA-synt_1c PF00749.16 gi|433591001|ref|YP_007280497.1| - 1.8e-58 197.6 0.0 2.2e-58 197.3 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1c_C PF03950.13 gi|433591001|ref|YP_007280497.1| - 8.9e-18 64.5 0.0 3.8e-17 62.5 0.0 2.0 1 1 0 1 1 1 1 tRNA synthetases class I (E and Q), anti-codon binding domain DUF456 PF04306.8 gi|433591003|ref|YP_007280499.1| - 4.3e-24 85.1 28.7 4.3e-24 85.1 19.9 1.7 1 1 1 2 2 2 1 Protein of unknown function (DUF456) adh_short PF00106.20 gi|433591004|ref|YP_007280500.1| - 7.1e-20 71.5 1.2 1.1e-19 71.0 0.8 1.2 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|433591004|ref|YP_007280500.1| - 3.8e-08 33.1 0.4 5.8e-08 32.6 0.3 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|433591004|ref|YP_007280500.1| - 5.3e-07 29.3 0.2 9.1e-07 28.5 0.1 1.4 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family adh_short_C2 PF13561.1 gi|433591004|ref|YP_007280500.1| - 1.5e-06 28.1 0.0 2e-06 27.7 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase NAD_binding_10 PF13460.1 gi|433591004|ref|YP_007280500.1| - 0.0071 16.3 0.9 0.019 14.9 0.6 1.9 1 1 0 1 1 1 1 NADH(P)-binding Eno-Rase_NADH_b PF12242.3 gi|433591004|ref|YP_007280500.1| - 0.032 14.0 1.0 0.053 13.3 0.1 1.8 2 0 0 2 2 2 0 NAD(P)H binding domain of trans-2-enoyl-CoA reductase F420_oxidored PF03807.12 gi|433591004|ref|YP_007280500.1| - 0.066 13.6 0.2 0.15 12.4 0.1 1.7 1 1 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent CorC_HlyC PF03471.12 gi|433591005|ref|YP_007280501.1| - 0.071 12.8 0.0 0.087 12.6 0.0 1.2 1 0 0 1 1 1 0 Transporter associated domain GNAT_acetyltr_2 PF13718.1 gi|433591006|ref|YP_007280502.1| - 5.3e-50 169.4 0.0 2.2e-49 167.4 0.0 1.8 1 1 0 1 1 1 1 GNAT acetyltransferase 2 Helicase_RecD PF05127.9 gi|433591006|ref|YP_007280502.1| - 2.6e-49 167.2 0.0 4e-49 166.6 0.0 1.3 1 0 0 1 1 1 1 Helicase DUF1726 PF08351.6 gi|433591006|ref|YP_007280502.1| - 1.6e-21 75.7 0.0 9.3e-20 70.1 0.0 2.8 2 0 0 2 2 2 1 Domain of unknown function (DUF1726) AAA_30 PF13604.1 gi|433591006|ref|YP_007280502.1| - 2.4e-10 40.2 2.5 7.3e-10 38.7 1.7 1.9 1 0 0 1 1 1 1 AAA domain tRNA_bind_2 PF13725.1 gi|433591006|ref|YP_007280502.1| - 2.1e-09 37.4 0.0 5.3e-09 36.1 0.0 1.7 1 0 0 1 1 1 1 Possible tRNA binding domain Acetyltransf_7 PF13508.1 gi|433591006|ref|YP_007280502.1| - 1.5e-05 25.0 0.0 3e-05 24.0 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|433591006|ref|YP_007280502.1| - 0.00053 20.1 0.1 0.06 13.4 0.0 2.9 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|433591006|ref|YP_007280502.1| - 0.01 15.8 0.1 0.025 14.6 0.1 1.7 1 0 0 1 1 1 0 Acetyltransferase (GNAT) family Phage_tail_X PF05489.7 gi|433591007|ref|YP_007280503.1| - 0.095 12.1 0.0 0.11 11.9 0.0 1.1 1 0 0 1 1 1 0 Phage Tail Protein X Strep_67kDa_ant PF06100.6 gi|433591008|ref|YP_007280504.1| - 2.4e-180 600.1 0.0 2.8e-180 599.9 0.0 1.0 1 0 0 1 1 1 1 Streptococcal 67 kDa myosin-cross-reactive antigen like family NAD_binding_8 PF13450.1 gi|433591008|ref|YP_007280504.1| - 2.8e-05 24.0 0.1 5.3e-05 23.1 0.0 1.5 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.19 gi|433591008|ref|YP_007280504.1| - 0.00012 21.1 0.1 0.0013 17.7 0.1 2.1 1 1 0 1 1 1 1 FAD dependent oxidoreductase Ribosomal_L7Ae PF01248.21 gi|433591010|ref|YP_007280506.1| - 8.5e-25 86.1 0.0 1e-24 85.8 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family PELOTA_1 PF15608.1 gi|433591010|ref|YP_007280506.1| - 6.9e-05 22.5 0.0 0.0001 21.9 0.0 1.3 1 0 0 1 1 1 1 PELOTA RNA binding domain eRF1_3 PF03465.10 gi|433591010|ref|YP_007280506.1| - 0.049 13.8 0.1 0.11 12.7 0.0 1.7 1 1 0 1 1 1 0 eRF1 domain 3 Ribosomal_S28e PF01200.13 gi|433591011|ref|YP_007280507.1| - 2.5e-28 97.5 0.7 2.6e-28 97.5 0.5 1.0 1 0 0 1 1 1 1 Ribosomal protein S28e Ribosomal_L24e PF01246.15 gi|433591012|ref|YP_007280508.1| - 7.1e-23 80.2 0.0 1e-22 79.7 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L24e Nop14 PF04147.7 gi|433591012|ref|YP_007280508.1| - 1.2 6.9 17.4 1.2 6.9 12.1 1.0 1 0 0 1 1 1 0 Nop14-like family PPP4R2 PF09184.6 gi|433591012|ref|YP_007280508.1| - 5.1 6.5 13.9 5.5 6.4 9.6 1.1 1 0 0 1 1 1 0 PPP4R2 NDK PF00334.14 gi|433591013|ref|YP_007280509.1| - 2.1e-52 176.4 0.0 2.4e-52 176.2 0.0 1.0 1 0 0 1 1 1 1 Nucleoside diphosphate kinase HTH_20 PF12840.2 gi|433591014|ref|YP_007280510.1| - 0.096 12.5 1.0 3.7 7.4 0.2 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain Sod_Fe_C PF02777.13 gi|433591015|ref|YP_007280511.1| - 2.4e-36 123.7 0.1 3.9e-36 123.0 0.1 1.3 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, C-terminal domain Sod_Fe_N PF00081.17 gi|433591015|ref|YP_007280511.1| - 1.1e-30 105.7 0.4 2.1e-30 104.7 0.3 1.5 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, alpha-hairpin domain FAD-oxidase_C PF02913.14 gi|433591016|ref|YP_007280512.1| - 5.8e-61 205.9 0.4 1.1e-60 205.0 0.3 1.5 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.18 gi|433591016|ref|YP_007280512.1| - 9.6e-40 135.2 0.5 2.1e-39 134.1 0.1 1.8 2 0 0 2 2 2 1 FAD binding domain Fer4_17 PF13534.1 gi|433591016|ref|YP_007280512.1| - 3.4e-09 36.9 3.8 6.6e-09 35.9 2.7 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|433591016|ref|YP_007280512.1| - 5.2e-09 35.9 4.7 1.1e-08 34.9 3.2 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|433591016|ref|YP_007280512.1| - 7.6e-06 26.2 0.9 0.00013 22.3 0.1 2.6 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|433591016|ref|YP_007280512.1| - 0.00064 20.0 4.3 0.0017 18.7 3.0 1.8 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|433591016|ref|YP_007280512.1| - 0.0024 17.6 3.9 0.061 13.1 0.3 2.6 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|433591016|ref|YP_007280512.1| - 0.0028 17.4 9.1 0.18 11.7 1.0 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|433591016|ref|YP_007280512.1| - 0.015 15.0 9.6 0.18 11.6 1.0 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain CCG PF02754.11 gi|433591016|ref|YP_007280512.1| - 0.015 15.2 0.3 0.4 10.7 0.1 3.1 3 0 0 3 3 2 0 Cysteine-rich domain Fer4 PF00037.22 gi|433591016|ref|YP_007280512.1| - 0.024 14.2 12.7 0.15 11.6 2.5 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_9 PF13187.1 gi|433591016|ref|YP_007280512.1| - 0.058 13.6 9.5 0.36 11.1 1.6 2.2 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|433591016|ref|YP_007280512.1| - 0.52 10.7 12.3 0.63 10.5 2.0 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_6 PF12837.2 gi|433591016|ref|YP_007280512.1| - 5.1 7.1 11.8 4.2 7.3 1.7 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain UPF0278 PF08745.6 gi|433591017|ref|YP_007280513.1| - 9.2e-76 253.6 0.6 1e-75 253.5 0.4 1.0 1 0 0 1 1 1 1 UPF0278 family HyaE PF07449.6 gi|433591017|ref|YP_007280513.1| - 0.034 14.0 0.2 1.6 8.6 0.1 2.3 2 0 0 2 2 2 0 Hydrogenase-1 expression protein HyaE CorA PF01544.13 gi|433591017|ref|YP_007280513.1| - 0.13 11.2 0.1 0.18 10.8 0.1 1.2 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein DNA_ligase_A_M PF01068.16 gi|433591018|ref|YP_007280514.1| - 2e-13 50.1 0.0 3.6e-13 49.3 0.0 1.3 1 0 0 1 1 1 1 ATP dependent DNA ligase domain RNA_ligase PF09414.5 gi|433591018|ref|YP_007280514.1| - 2.6e-05 24.0 0.0 0.00033 20.5 0.0 2.1 1 1 0 1 1 1 1 RNA ligase TFIID_20kDa PF03847.8 gi|433591019|ref|YP_007280515.1| - 0.11 12.8 0.1 0.14 12.4 0.0 1.2 1 0 0 1 1 1 0 Transcription initiation factor TFIID subunit A Lactamase_B PF00753.22 gi|433591021|ref|YP_007280517.1| - 2e-24 86.3 10.2 2.8e-24 85.8 7.0 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|433591021|ref|YP_007280517.1| - 0.0034 16.9 2.3 0.0087 15.6 1.6 1.8 1 1 0 1 1 1 1 Beta-lactamase superfamily domain HTH_IclR PF09339.5 gi|433591022|ref|YP_007280518.1| - 0.0002 20.8 0.0 0.00036 20.0 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|433591022|ref|YP_007280518.1| - 0.00079 18.7 0.0 0.0014 17.9 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding DUF4102 PF13356.1 gi|433591022|ref|YP_007280518.1| - 0.0089 15.8 0.0 0.018 14.8 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4102) MarR_2 PF12802.2 gi|433591022|ref|YP_007280518.1| - 0.012 15.2 0.0 0.027 14.1 0.0 1.5 1 0 0 1 1 1 0 MarR family TctB PF07331.6 gi|433591022|ref|YP_007280518.1| - 0.013 15.1 1.1 0.02 14.5 0.1 1.7 2 0 0 2 2 2 0 Tripartite tricarboxylate transporter TctB family EAP30 PF04157.11 gi|433591022|ref|YP_007280518.1| - 0.045 12.9 0.1 0.098 11.7 0.1 1.5 1 0 0 1 1 1 0 EAP30/Vps36 family Phage_integrase PF00589.17 gi|433591023|ref|YP_007280519.1| - 1.6e-17 63.6 0.3 2.9e-17 62.8 0.2 1.4 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_4 PF13495.1 gi|433591023|ref|YP_007280519.1| - 3.2e-06 27.3 2.9 3.4e-06 27.2 0.1 2.5 3 0 0 3 3 3 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.12 gi|433591023|ref|YP_007280519.1| - 0.49 10.5 7.0 0.37 10.9 0.5 3.0 3 0 0 3 3 3 0 Phage integrase, N-terminal SAM-like domain Phage_integrase PF00589.17 gi|433591024|ref|YP_007280520.1| - 6.9e-07 29.0 0.0 1.1e-06 28.4 0.0 1.2 1 0 0 1 1 1 1 Phage integrase family AAA_16 PF13191.1 gi|433591025|ref|YP_007280521.1| - 3e-12 46.8 0.1 5e-11 42.9 0.0 2.6 2 1 1 3 3 3 1 AAA ATPase domain Cdc6_C PF09079.6 gi|433591025|ref|YP_007280521.1| - 7.5e-12 44.8 0.0 2e-11 43.4 0.0 1.8 2 0 0 2 2 1 1 CDC6, C terminal AAA PF00004.24 gi|433591025|ref|YP_007280521.1| - 3.5e-11 43.4 0.0 7.7e-11 42.3 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|433591025|ref|YP_007280521.1| - 2.9e-09 37.1 0.0 7e-09 35.9 0.0 1.6 1 0 0 1 1 1 1 AAA domain DUF815 PF05673.8 gi|433591025|ref|YP_007280521.1| - 2.9e-05 23.1 0.0 5e-05 22.3 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF815) NACHT PF05729.7 gi|433591025|ref|YP_007280521.1| - 0.00014 21.6 0.0 0.00031 20.4 0.0 1.5 1 1 0 1 1 1 1 NACHT domain Arch_ATPase PF01637.13 gi|433591025|ref|YP_007280521.1| - 0.00046 19.9 0.0 0.0017 18.1 0.0 1.8 2 0 0 2 2 2 1 Archaeal ATPase AAA_17 PF13207.1 gi|433591025|ref|YP_007280521.1| - 0.0025 18.6 0.0 0.0079 17.0 0.0 2.0 1 1 0 1 1 1 1 AAA domain Bac_DnaA PF00308.13 gi|433591025|ref|YP_007280521.1| - 0.0028 17.3 0.0 0.017 14.7 0.0 2.0 2 0 0 2 2 2 1 Bacterial dnaA protein AAA_5 PF07728.9 gi|433591025|ref|YP_007280521.1| - 0.0038 16.9 0.0 0.033 13.8 0.0 2.4 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_25 PF13481.1 gi|433591025|ref|YP_007280521.1| - 0.0066 15.8 1.7 0.18 11.1 0.2 2.9 2 1 0 2 2 2 1 AAA domain Sigma54_activat PF00158.21 gi|433591025|ref|YP_007280521.1| - 0.011 15.2 0.0 0.019 14.4 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_19 PF13245.1 gi|433591025|ref|YP_007280521.1| - 0.013 15.2 0.0 0.039 13.7 0.0 1.8 1 0 0 1 1 1 0 Part of AAA domain AAA_32 PF13654.1 gi|433591025|ref|YP_007280521.1| - 0.017 13.8 0.1 1.7 7.2 0.0 2.2 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.17 gi|433591025|ref|YP_007280521.1| - 0.021 14.9 0.0 0.091 12.9 0.0 2.1 2 0 0 2 2 2 0 RNA helicase ABC_tran PF00005.22 gi|433591025|ref|YP_007280521.1| - 0.036 14.3 0.1 0.26 11.5 0.0 2.3 1 1 1 2 2 2 0 ABC transporter NB-ARC PF00931.17 gi|433591025|ref|YP_007280521.1| - 0.04 12.7 0.0 0.075 11.8 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain Mg_chelatase PF01078.16 gi|433591025|ref|YP_007280521.1| - 0.044 12.9 0.0 0.077 12.1 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_2 PF07724.9 gi|433591025|ref|YP_007280521.1| - 0.062 13.2 0.0 0.13 12.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain (Cdc48 subfamily) Rad17 PF03215.10 gi|433591025|ref|YP_007280521.1| - 0.075 11.6 0.0 0.41 9.2 0.0 2.0 2 0 0 2 2 2 0 Rad17 cell cycle checkpoint protein Tub_2 PF04525.7 gi|433591027|ref|YP_007280523.1| - 0.00049 19.5 0.1 0.015 14.7 0.1 2.3 2 1 0 2 2 2 2 Tubby C 2 E1-E2_ATPase PF00122.15 gi|433591029|ref|YP_007280525.1| - 4.5e-43 146.9 4.5 4.5e-43 146.9 3.1 1.7 2 0 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.21 gi|433591029|ref|YP_007280525.1| - 1.9e-33 116.7 3.5 1.9e-33 116.7 2.4 1.9 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HMA PF00403.21 gi|433591029|ref|YP_007280525.1| - 1.7e-11 44.0 0.0 5.8e-11 42.3 0.0 2.0 1 0 0 1 1 1 1 Heavy-metal-associated domain HAD PF12710.2 gi|433591029|ref|YP_007280525.1| - 1.9e-11 44.4 0.0 5.4e-11 43.0 0.0 1.8 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|433591029|ref|YP_007280525.1| - 0.0014 18.2 0.3 0.0097 15.5 0.7 1.9 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase ATPase-cat_bd PF12156.3 gi|433591029|ref|YP_007280525.1| - 0.0034 17.8 1.0 0.0084 16.6 0.5 1.9 2 0 0 2 2 2 1 Putative metal-binding domain of cation transport ATPase Hydrolase_6 PF13344.1 gi|433591029|ref|YP_007280525.1| - 0.12 12.3 0.0 0.87 9.5 0.0 2.3 2 0 0 2 2 2 0 Haloacid dehalogenase-like hydrolase Pirin PF02678.11 gi|433591030|ref|YP_007280526.1| - 9.6e-19 67.2 0.2 1.7e-18 66.4 0.2 1.4 1 0 0 1 1 1 1 Pirin TetR_N PF00440.18 gi|433591031|ref|YP_007280527.1| - 1.4e-13 50.2 0.2 2.5e-13 49.4 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_6 PF13977.1 gi|433591031|ref|YP_007280527.1| - 6e-13 48.8 1.3 6e-13 48.8 0.9 1.5 2 0 0 2 2 2 1 Bacterial transcriptional repressor HTH_38 PF13936.1 gi|433591031|ref|YP_007280527.1| - 0.055 13.0 0.0 0.11 12.0 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain MatE PF01554.13 gi|433591032|ref|YP_007280528.1| - 2.9e-58 196.0 32.4 5e-33 114.0 9.7 2.5 2 0 0 2 2 2 2 MatE Polysacc_synt_C PF14667.1 gi|433591032|ref|YP_007280528.1| - 2e-07 30.9 37.6 1.2e-05 25.1 11.2 4.8 3 1 1 4 4 4 2 Polysaccharide biosynthesis C-terminal domain Tom5 PF10642.4 gi|433591032|ref|YP_007280528.1| - 0.07 12.7 1.0 3.1 7.5 0.1 2.8 2 0 0 2 2 2 0 Mitochondrial import receptor subunit or translocase EamA PF00892.15 gi|433591033|ref|YP_007280529.1| - 3.2e-31 108.0 36.6 1.6e-18 66.9 11.4 2.2 2 0 0 2 2 2 2 EamA-like transporter family UPF0546 PF10639.4 gi|433591033|ref|YP_007280529.1| - 0.001 18.8 1.9 0.001 18.8 1.3 2.2 2 0 0 2 2 2 1 Uncharacterised protein family UPF0546 DUF914 PF06027.7 gi|433591033|ref|YP_007280529.1| - 0.001 17.9 5.7 0.0014 17.5 4.0 1.2 1 0 0 1 1 1 1 Eukaryotic protein of unknown function (DUF914) EmrE PF13536.1 gi|433591033|ref|YP_007280529.1| - 0.0089 16.2 7.0 0.0089 16.2 4.9 4.0 2 2 2 4 4 4 3 Multidrug resistance efflux transporter TPT PF03151.11 gi|433591033|ref|YP_007280529.1| - 0.029 14.0 21.3 0.055 13.1 6.2 2.8 2 1 0 2 2 2 0 Triose-phosphate Transporter family PHO4 PF01384.15 gi|433591034|ref|YP_007280530.1| - 2.7e-61 207.0 19.0 3.5e-61 206.6 13.2 1.1 1 0 0 1 1 1 1 Phosphate transporter family DDE_Tnp_1 PF01609.16 gi|433591036|ref|YP_007280532.1| - 1.5e-14 54.0 0.0 2.1e-14 53.5 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.6 gi|433591036|ref|YP_007280532.1| - 0.0027 17.5 0.0 0.0054 16.5 0.0 1.5 1 0 0 1 1 1 1 Transposase domain (DUF772) Response_reg PF00072.19 gi|433591037|ref|YP_007280533.1| - 0.00031 20.7 0.1 0.00033 20.6 0.1 1.0 1 0 0 1 1 1 1 Response regulator receiver domain DDE_Tnp_1 PF01609.16 gi|433591039|ref|YP_007280535.1| - 7.6e-11 41.9 2.6 1.3e-10 41.1 1.8 1.4 1 0 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.6 gi|433591039|ref|YP_007280535.1| - 0.021 14.6 0.1 0.061 13.2 0.1 1.8 1 0 0 1 1 1 0 Transposase domain (DUF772) DDE_Tnp_1_assoc PF13808.1 gi|433591039|ref|YP_007280535.1| - 0.089 12.4 0.2 0.18 11.5 0.1 1.6 1 0 0 1 1 1 0 DDE_Tnp_1-associated DDE_5 PF13546.1 gi|433591040|ref|YP_007280536.1| - 3.1e-14 52.4 0.0 7.4e-14 51.2 0.0 1.5 1 1 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_1 PF01609.16 gi|433591040|ref|YP_007280536.1| - 2.6e-12 46.7 0.3 4.4e-12 45.9 0.1 1.5 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_2 PF04693.7 gi|433591040|ref|YP_007280536.1| - 9.3e-05 21.5 0.0 0.00046 19.3 0.0 1.9 1 1 0 1 1 1 1 Archaeal putative transposase ISC1217 DDE_Tnp_1_6 PF13751.1 gi|433591040|ref|YP_007280536.1| - 0.16 12.0 0.0 0.49 10.3 0.0 1.8 2 0 0 2 2 2 0 Transposase DDE domain Response_reg PF00072.19 gi|433591041|ref|YP_007280537.1| - 1e-16 60.9 0.0 1.1e-16 60.8 0.0 1.0 1 0 0 1 1 1 1 Response regulator receiver domain Caps_synth_CapC PF14102.1 gi|433591042|ref|YP_007280538.1| - 5.4e-09 36.2 30.7 2.1e-08 34.2 6.8 2.7 2 1 0 2 2 2 2 Capsule biosynthesis CapC Mur_ligase_M PF08245.7 gi|433591043|ref|YP_007280539.1| - 0.053 13.5 0.0 0.092 12.7 0.0 1.4 1 0 0 1 1 1 0 Mur ligase middle domain DDE_Tnp_IS1595 PF12762.2 gi|433591044|ref|YP_007280540.1| - 6.9e-21 74.6 0.0 9.5e-21 74.2 0.0 1.2 1 0 0 1 1 1 1 ISXO2-like transposase domain Zn_Tnp_IS1595 PF12760.2 gi|433591044|ref|YP_007280540.1| - 2.8e-10 39.8 0.6 5.2e-10 38.9 0.4 1.5 1 0 0 1 1 1 1 Transposase zinc-ribbon domain Zn_Tnp_IS1 PF03811.8 gi|433591044|ref|YP_007280540.1| - 0.00025 20.4 5.0 0.00026 20.4 2.4 1.8 2 0 0 2 2 2 1 InsA N-terminal domain zf-Dof PF02701.10 gi|433591044|ref|YP_007280540.1| - 0.03 14.2 5.2 0.058 13.3 3.6 1.4 1 0 0 1 1 1 0 Dof domain, zinc finger DUF2089 PF09862.4 gi|433591044|ref|YP_007280540.1| - 0.089 12.5 0.0 0.14 11.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2089) zf-ISL3 PF14690.1 gi|433591044|ref|YP_007280540.1| - 0.18 11.8 6.6 1.5 8.8 0.3 2.6 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-C2H2_6 PF13912.1 gi|433591044|ref|YP_007280540.1| - 1.8 8.5 4.6 1.1 9.3 0.2 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger TF_Zn_Ribbon PF08271.7 gi|433591044|ref|YP_007280540.1| - 1.9 7.8 4.3 7.5 5.9 2.3 2.1 1 1 1 2 2 2 0 TFIIB zinc-binding DUF1628 PF07790.6 gi|433591045|ref|YP_007280541.1| - 0.011 16.5 5.7 0.033 14.9 3.0 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF1628) DDE_Tnp_1 PF01609.16 gi|433591046|ref|YP_007280542.1| - 1.5e-14 54.0 0.0 2.1e-14 53.5 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.6 gi|433591046|ref|YP_007280542.1| - 0.0027 17.5 0.0 0.0054 16.5 0.0 1.5 1 0 0 1 1 1 1 Transposase domain (DUF772) PAS_4 PF08448.5 gi|433591047|ref|YP_007280543.1| - 2.7e-59 197.9 19.5 2.5e-15 56.4 0.1 6.8 7 0 0 7 7 7 5 PAS fold PAS_9 PF13426.1 gi|433591047|ref|YP_007280543.1| - 1.1e-53 180.0 4.5 2.6e-17 63.0 0.0 5.8 5 0 0 5 5 5 5 PAS domain PAS PF00989.19 gi|433591047|ref|YP_007280543.1| - 1.7e-37 127.6 3.1 8.4e-17 60.9 0.0 5.8 5 1 0 5 5 5 4 PAS fold PAS_3 PF08447.6 gi|433591047|ref|YP_007280543.1| - 7.6e-22 77.2 3.7 3.2e-11 43.1 0.1 4.2 5 0 0 5 5 5 2 PAS fold PAS_8 PF13188.1 gi|433591047|ref|YP_007280543.1| - 1.6e-21 75.3 0.1 4e-07 29.6 0.0 4.9 4 0 0 4 4 4 4 PAS domain HATPase_c PF02518.21 gi|433591047|ref|YP_007280543.1| - 1.2e-19 70.0 0.4 3.5e-19 68.5 0.3 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF_2 PF13185.1 gi|433591047|ref|YP_007280543.1| - 2.3e-16 60.6 6.1 1.5e-07 31.9 0.5 4.1 3 0 0 3 3 3 2 GAF domain GAF_3 PF13492.1 gi|433591047|ref|YP_007280543.1| - 3.2e-16 59.6 1.1 7.6e-07 29.2 0.0 3.9 3 0 0 3 3 3 2 GAF domain HisKA PF00512.20 gi|433591047|ref|YP_007280543.1| - 1.5e-13 50.5 0.5 1.5e-13 50.5 0.4 3.0 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain Response_reg PF00072.19 gi|433591047|ref|YP_007280543.1| - 4.2e-12 46.0 0.0 1.4e-11 44.3 0.0 1.9 1 0 0 1 1 1 1 Response regulator receiver domain GAF PF01590.21 gi|433591047|ref|YP_007280543.1| - 7e-12 45.7 0.3 4.7e-06 26.8 0.1 2.9 2 0 0 2 2 2 2 GAF domain PAS_10 PF13596.1 gi|433591047|ref|YP_007280543.1| - 3e-06 27.4 0.0 0.0038 17.4 0.0 3.5 3 0 0 3 3 3 1 PAS domain OKR_DC_1_N PF03709.10 gi|433591047|ref|YP_007280543.1| - 0.00094 19.2 0.3 0.0039 17.2 0.0 2.3 2 0 0 2 2 2 1 Orn/Lys/Arg decarboxylase, N-terminal domain PAS_7 PF12860.2 gi|433591047|ref|YP_007280543.1| - 0.0055 16.6 5.2 3.8 7.5 0.0 5.3 5 2 0 5 5 5 2 PAS fold HATPase_c_3 PF13589.1 gi|433591047|ref|YP_007280543.1| - 0.04 13.5 0.1 0.1 12.2 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MarR_2 PF12802.2 gi|433591048|ref|YP_007280544.1| - 7e-07 28.8 0.0 1.1e-06 28.2 0.0 1.2 1 0 0 1 1 1 1 MarR family HrcA_DNA-bdg PF03444.10 gi|433591048|ref|YP_007280544.1| - 0.0011 18.4 0.0 0.0016 17.8 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding TrmB PF01978.14 gi|433591048|ref|YP_007280544.1| - 0.0011 18.6 0.0 0.0017 18.0 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.1 gi|433591048|ref|YP_007280544.1| - 0.0026 17.4 0.0 0.0039 16.9 0.0 1.2 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain Rrf2 PF02082.15 gi|433591048|ref|YP_007280544.1| - 0.0058 16.7 0.0 0.0077 16.3 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator MarR PF01047.17 gi|433591048|ref|YP_007280544.1| - 0.0072 16.0 0.0 0.012 15.2 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|433591048|ref|YP_007280544.1| - 0.0075 16.5 0.0 0.012 15.9 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain GntR PF00392.16 gi|433591048|ref|YP_007280544.1| - 0.0094 15.3 0.0 0.016 14.6 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_24 PF13412.1 gi|433591048|ref|YP_007280544.1| - 0.014 14.7 0.0 0.021 14.2 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Fe_dep_repress PF01325.14 gi|433591048|ref|YP_007280544.1| - 0.02 14.8 0.0 0.034 14.0 0.0 1.3 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_IclR PF09339.5 gi|433591048|ref|YP_007280544.1| - 0.02 14.4 0.0 0.03 13.8 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain PaaX PF07848.7 gi|433591048|ref|YP_007280544.1| - 0.024 14.6 0.0 0.038 13.9 0.0 1.3 1 0 0 1 1 1 0 PaaX-like protein HTH_5 PF01022.15 gi|433591048|ref|YP_007280544.1| - 0.027 14.1 0.0 0.039 13.6 0.0 1.2 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|433591048|ref|YP_007280544.1| - 0.031 14.0 0.0 0.044 13.6 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|433591048|ref|YP_007280544.1| - 0.041 13.3 0.0 0.07 12.6 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 z-alpha PF02295.12 gi|433591048|ref|YP_007280544.1| - 0.066 12.9 0.0 0.092 12.5 0.0 1.2 1 0 0 1 1 1 0 Adenosine deaminase z-alpha domain HTH_34 PF13601.1 gi|433591048|ref|YP_007280544.1| - 0.13 12.3 0.0 0.19 11.7 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_11 PF08279.7 gi|433591048|ref|YP_007280544.1| - 0.15 11.7 0.0 0.25 11.0 0.0 1.3 1 0 0 1 1 1 0 HTH domain Hydrolase_6 PF13344.1 gi|433591049|ref|YP_007280545.1| - 1.4e-23 82.6 0.0 6.8e-23 80.4 0.0 2.2 3 0 0 3 3 3 1 Haloacid dehalogenase-like hydrolase NUDIX PF00293.23 gi|433591049|ref|YP_007280545.1| - 4.1e-20 71.8 0.1 8.9e-20 70.7 0.1 1.5 1 0 0 1 1 1 1 NUDIX domain Hydrolase_like PF13242.1 gi|433591049|ref|YP_007280545.1| - 3e-12 46.0 0.4 2.6e-11 43.0 0.0 2.4 2 0 0 2 2 2 1 HAD-hyrolase-like Hydrolase PF00702.21 gi|433591049|ref|YP_007280545.1| - 2.6e-07 31.2 0.3 5.2e-05 23.7 0.1 3.2 2 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|433591049|ref|YP_007280545.1| - 5.3e-06 26.7 0.1 0.0063 16.7 0.0 3.1 3 0 0 3 3 3 2 Haloacid dehalogenase-like hydrolase IclR PF01614.13 gi|433591050|ref|YP_007280546.1| - 6.9e-32 109.8 0.0 1.3e-31 109.0 0.0 1.4 1 0 0 1 1 1 1 Bacterial transcriptional regulator HTH_IclR PF09339.5 gi|433591050|ref|YP_007280546.1| - 2.5e-08 33.3 0.0 5.6e-08 32.2 0.0 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|433591050|ref|YP_007280546.1| - 1.2e-07 31.0 0.0 2.8e-07 29.8 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|433591050|ref|YP_007280546.1| - 4e-05 23.1 0.0 0.00015 21.3 0.0 1.9 2 0 0 2 2 2 1 MarR family HTH_45 PF14947.1 gi|433591050|ref|YP_007280546.1| - 4.8e-05 23.0 0.0 9.8e-05 22.0 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_27 PF13463.1 gi|433591050|ref|YP_007280546.1| - 0.0001 22.5 0.1 0.005 17.1 0.0 2.8 3 1 0 3 3 2 1 Winged helix DNA-binding domain MarR PF01047.17 gi|433591050|ref|YP_007280546.1| - 0.00012 21.6 0.0 0.00071 19.2 0.0 2.2 3 0 0 3 3 3 1 MarR family HTH_5 PF01022.15 gi|433591050|ref|YP_007280546.1| - 0.00032 20.2 0.0 0.00067 19.2 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|433591050|ref|YP_007280546.1| - 0.00099 18.8 0.0 0.004 16.9 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain PadR PF03551.9 gi|433591050|ref|YP_007280546.1| - 0.0028 17.3 0.0 0.064 13.0 0.0 2.6 2 0 0 2 2 2 1 Transcriptional regulator PadR-like family HTH_11 PF08279.7 gi|433591050|ref|YP_007280546.1| - 0.0068 16.0 0.0 0.035 13.7 0.0 2.2 2 1 1 3 3 3 1 HTH domain HTH_41 PF14502.1 gi|433591050|ref|YP_007280546.1| - 0.0081 15.7 0.0 0.031 13.8 0.0 2.0 1 0 0 1 1 1 1 Helix-turn-helix domain DUF4423 PF14394.1 gi|433591050|ref|YP_007280546.1| - 0.016 14.7 0.0 0.028 13.9 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) TrmB PF01978.14 gi|433591050|ref|YP_007280546.1| - 0.019 14.6 0.0 0.11 12.2 0.0 2.2 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB B-block_TFIIIC PF04182.7 gi|433591050|ref|YP_007280546.1| - 0.074 12.9 0.0 0.16 11.8 0.0 1.5 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC FaeA PF04703.7 gi|433591050|ref|YP_007280546.1| - 0.098 12.8 0.0 0.19 11.9 0.0 1.5 1 0 0 1 1 1 0 FaeA-like protein HTH_36 PF13730.1 gi|433591050|ref|YP_007280546.1| - 0.13 12.4 0.0 0.24 11.5 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain ELFV_dehydrog PF00208.16 gi|433591051|ref|YP_007280547.1| - 9.7e-70 234.9 0.1 1.3e-69 234.4 0.0 1.2 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.13 gi|433591051|ref|YP_007280547.1| - 4e-52 175.2 0.0 6e-52 174.6 0.0 1.3 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.14 gi|433591051|ref|YP_007280547.1| - 0.025 13.7 0.0 0.047 12.8 0.0 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Oxidored_nitro PF00148.14 gi|433591051|ref|YP_007280547.1| - 0.14 10.7 0.0 0.22 10.1 0.0 1.3 1 0 0 1 1 1 0 Nitrogenase component 1 type Oxidoreductase Bac_GDH PF05088.7 gi|433591051|ref|YP_007280547.1| - 0.16 9.3 0.0 0.24 8.7 0.0 1.1 1 0 0 1 1 1 0 Bacterial NAD-glutamate dehydrogenase Aminotran_3 PF00202.16 gi|433591052|ref|YP_007280548.1| - 2.2e-69 233.9 0.0 6e-69 232.4 0.0 1.6 1 1 0 1 1 1 1 Aminotransferase class-III Beta_elim_lyase PF01212.16 gi|433591052|ref|YP_007280548.1| - 0.0071 15.5 0.0 0.0099 15.0 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase Na_H_antiporter PF03553.9 gi|433591053|ref|YP_007280549.1| - 4.2e-54 183.6 22.0 4.2e-54 183.6 15.3 2.2 1 1 1 2 2 2 2 Na+/H+ antiporter family Ribosomal_S5_C PF03719.10 gi|433591053|ref|YP_007280549.1| - 0.026 13.8 0.5 0.13 11.5 0.1 2.2 2 0 0 2 2 2 0 Ribosomal protein S5, C-terminal domain Aminotran_3 PF00202.16 gi|433591054|ref|YP_007280550.1| - 3.4e-71 239.8 0.0 1.2e-70 238.0 0.0 1.7 1 1 0 1 1 1 1 Aminotransferase class-III Beta_elim_lyase PF01212.16 gi|433591054|ref|YP_007280550.1| - 0.078 12.1 0.0 0.1 11.6 0.0 1.2 1 0 0 1 1 1 0 Beta-eliminating lyase Arginase PF00491.16 gi|433591055|ref|YP_007280551.1| - 5.9e-74 248.8 5.8 7e-74 248.5 4.0 1.0 1 0 0 1 1 1 1 Arginase family IclR PF01614.13 gi|433591056|ref|YP_007280552.1| - 7.4e-32 109.7 0.6 2.3e-31 108.1 0.1 1.9 2 0 0 2 2 2 1 Bacterial transcriptional regulator HTH_IclR PF09339.5 gi|433591056|ref|YP_007280552.1| - 9.2e-11 41.1 0.2 3.9e-10 39.1 0.0 2.1 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_5 PF01022.15 gi|433591056|ref|YP_007280552.1| - 0.00011 21.7 0.0 0.00027 20.5 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|433591056|ref|YP_007280552.1| - 0.00015 21.0 0.1 0.00063 19.0 0.0 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_45 PF14947.1 gi|433591056|ref|YP_007280552.1| - 0.0028 17.4 0.0 0.0072 16.1 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix MarR_2 PF12802.2 gi|433591056|ref|YP_007280552.1| - 0.0093 15.6 0.0 0.027 14.1 0.0 1.7 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|433591056|ref|YP_007280552.1| - 0.01 15.4 0.1 0.038 13.6 0.0 2.0 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|433591056|ref|YP_007280552.1| - 0.013 15.2 0.8 0.041 13.6 0.0 2.2 3 0 0 3 3 3 0 Helix-turn-helix domain HTH_27 PF13463.1 gi|433591056|ref|YP_007280552.1| - 0.036 14.3 1.5 0.12 12.7 0.1 2.4 3 0 0 3 3 2 0 Winged helix DNA-binding domain DUF1803 PF08820.5 gi|433591056|ref|YP_007280552.1| - 0.061 13.0 0.0 0.11 12.2 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1803) HTH_11 PF08279.7 gi|433591056|ref|YP_007280552.1| - 0.076 12.6 0.1 0.26 10.9 0.0 2.0 1 0 0 1 1 1 0 HTH domain DSBA PF01323.15 gi|433591056|ref|YP_007280552.1| - 0.14 11.7 0.1 1.3 8.5 0.0 2.2 2 1 0 2 2 2 0 DSBA-like thioredoxin domain Aldedh PF00171.17 gi|433591057|ref|YP_007280553.1| - 1.5e-144 481.8 0.0 1.7e-144 481.6 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.9 gi|433591057|ref|YP_007280553.1| - 0.00099 17.9 0.0 0.0022 16.7 0.0 1.4 1 1 0 1 1 1 1 Acyl-CoA reductase (LuxC) Na_H_antiporter PF03553.9 gi|433591058|ref|YP_007280554.1| - 1.3e-56 191.8 24.0 1.3e-56 191.8 16.6 2.9 1 1 1 2 2 2 1 Na+/H+ antiporter family TPP_enzyme_N PF02776.13 gi|433591059|ref|YP_007280555.1| - 1.5e-40 138.4 0.5 1.2e-37 129.0 0.1 2.5 2 0 0 2 2 2 2 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.16 gi|433591059|ref|YP_007280555.1| - 1.8e-35 121.7 0.0 3.2e-35 120.9 0.0 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.17 gi|433591059|ref|YP_007280555.1| - 1.1e-29 102.9 0.2 1.1e-28 99.7 0.2 2.3 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, central domain IclR PF01614.13 gi|433591060|ref|YP_007280556.1| - 5.9e-25 87.4 0.2 1.7e-24 85.9 0.0 1.8 2 0 0 2 2 2 1 Bacterial transcriptional regulator HTH_IclR PF09339.5 gi|433591060|ref|YP_007280556.1| - 2e-10 40.0 2.2 7.3e-10 38.2 0.1 2.8 3 0 0 3 3 3 1 IclR helix-turn-helix domain HTH_20 PF12840.2 gi|433591060|ref|YP_007280556.1| - 2.9e-05 23.7 0.0 8.2e-05 22.3 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|433591060|ref|YP_007280556.1| - 3.1e-05 23.5 0.1 9e-05 22.0 0.1 1.8 1 0 0 1 1 1 1 HTH domain HTH_5 PF01022.15 gi|433591060|ref|YP_007280556.1| - 3.6e-05 23.3 0.1 9e-05 22.0 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|433591060|ref|YP_007280556.1| - 9e-05 21.7 0.1 0.00022 20.5 0.1 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|433591060|ref|YP_007280556.1| - 0.00021 20.9 0.0 0.00074 19.1 0.0 1.9 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|433591060|ref|YP_007280556.1| - 0.00029 20.4 0.0 0.0091 15.6 0.0 2.4 2 1 0 2 2 2 1 MarR family HTH_9 PF08221.6 gi|433591060|ref|YP_007280556.1| - 0.0013 18.5 0.2 0.0032 17.2 0.1 1.6 1 0 0 1 1 1 1 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_36 PF13730.1 gi|433591060|ref|YP_007280556.1| - 0.0015 18.6 0.0 0.0037 17.3 0.0 1.8 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_AsnC-type PF13404.1 gi|433591060|ref|YP_007280556.1| - 0.0027 17.1 0.0 0.0089 15.5 0.0 1.9 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain MarR PF01047.17 gi|433591060|ref|YP_007280556.1| - 0.0098 15.5 0.2 0.022 14.4 0.2 1.5 1 0 0 1 1 1 1 MarR family HTH_40 PF14493.1 gi|433591060|ref|YP_007280556.1| - 0.016 15.3 0.2 0.11 12.6 0.0 2.1 1 1 1 2 2 2 0 Helix-turn-helix domain HTH_34 PF13601.1 gi|433591060|ref|YP_007280556.1| - 0.018 15.0 0.1 0.035 14.1 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain SMC_Nse1 PF07574.8 gi|433591060|ref|YP_007280556.1| - 0.025 14.1 0.1 0.047 13.3 0.1 1.4 1 0 0 1 1 1 0 Nse1 non-SMC component of SMC5-6 complex DUF2250 PF10007.4 gi|433591060|ref|YP_007280556.1| - 0.043 13.7 0.1 0.088 12.7 0.1 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) Fe_dep_repress PF01325.14 gi|433591060|ref|YP_007280556.1| - 0.085 12.8 0.0 0.23 11.3 0.0 1.7 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain LexA_DNA_bind PF01726.11 gi|433591060|ref|YP_007280556.1| - 0.094 12.2 0.0 0.25 10.9 0.0 1.8 1 0 0 1 1 1 0 LexA DNA binding domain Rrf2 PF02082.15 gi|433591060|ref|YP_007280556.1| - 0.11 12.6 0.1 0.23 11.5 0.1 1.5 1 0 0 1 1 1 0 Transcriptional regulator ECH PF00378.15 gi|433591061|ref|YP_007280557.1| - 1.6e-52 178.0 0.0 1.9e-52 177.8 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family ECH_C PF13766.1 gi|433591061|ref|YP_007280557.1| - 1.2e-05 25.4 0.2 0.0001 22.4 0.0 2.0 2 0 0 2 2 2 1 2-enoyl-CoA Hydratase C-terminal region Carboxyl_trans PF01039.17 gi|433591062|ref|YP_007280558.1| - 5.5e-119 397.7 0.0 6.5e-119 397.4 0.0 1.0 1 0 0 1 1 1 1 Carboxyl transferase domain DNAPolymera_Pol PF11590.3 gi|433591062|ref|YP_007280558.1| - 0.043 13.4 0.2 0.25 11.0 0.0 2.5 3 0 0 3 3 3 0 DNA polymerase catalytic subunit Pol DUF2849 PF11011.3 gi|433591062|ref|YP_007280558.1| - 0.49 10.6 2.4 2 8.7 0.6 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2849) AMP-binding PF00501.23 gi|433591063|ref|YP_007280559.1| - 5.4e-79 265.5 0.0 9.2e-79 264.7 0.0 1.4 1 1 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|433591063|ref|YP_007280559.1| - 4.5e-10 40.3 0.2 2.8e-09 37.8 0.0 2.2 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain Colicin_im PF03857.8 gi|433591064|ref|YP_007280560.1| - 0.12 12.1 0.2 0.13 11.9 0.1 1.1 1 0 0 1 1 1 0 Colicin immunity protein DUF3311 PF11755.3 gi|433591064|ref|YP_007280560.1| - 0.15 11.5 2.5 0.2 11.2 1.7 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3311) SSF PF00474.12 gi|433591065|ref|YP_007280561.1| - 8.6e-55 186.0 41.4 1.5e-54 185.2 28.7 1.4 1 1 0 1 1 1 1 Sodium:solute symporter family DUF1622 PF07784.6 gi|433591065|ref|YP_007280561.1| - 0.029 14.0 2.0 0.14 11.8 0.2 2.8 2 1 0 2 2 2 0 Protein of unknown function (DUF1622) HTH_24 PF13412.1 gi|433591067|ref|YP_007280563.1| - 2e-07 30.2 0.0 3e-07 29.7 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.5 gi|433591067|ref|YP_007280563.1| - 1.6e-06 27.6 0.3 2.5e-06 26.9 0.2 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|433591067|ref|YP_007280563.1| - 1.7e-06 27.6 0.1 2.6e-06 27.0 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|433591067|ref|YP_007280563.1| - 3.5e-06 26.7 0.1 6.4e-06 25.8 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AsnC-type PF13404.1 gi|433591067|ref|YP_007280563.1| - 3.5e-06 26.4 0.2 5.6e-06 25.7 0.1 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.7 gi|433591067|ref|YP_007280563.1| - 2.4e-05 23.8 0.0 3.9e-05 23.2 0.0 1.4 1 0 0 1 1 1 1 HTH domain TrmB PF01978.14 gi|433591067|ref|YP_007280563.1| - 2.6e-05 23.8 0.0 4.8e-05 22.9 0.0 1.5 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_28 PF13518.1 gi|433591067|ref|YP_007280563.1| - 6.8e-05 22.7 0.0 0.00012 22.0 0.0 1.4 1 1 0 1 1 1 1 Helix-turn-helix domain PadR PF03551.9 gi|433591067|ref|YP_007280563.1| - 0.00028 20.5 0.0 0.0004 20.0 0.0 1.4 1 1 0 1 1 1 1 Transcriptional regulator PadR-like family GntR PF00392.16 gi|433591067|ref|YP_007280563.1| - 0.00046 19.5 0.0 0.00079 18.8 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family TetR_N PF00440.18 gi|433591067|ref|YP_007280563.1| - 0.0005 19.6 0.1 0.00091 18.8 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family HTH_23 PF13384.1 gi|433591067|ref|YP_007280563.1| - 0.00056 19.4 0.0 0.001 18.6 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain HTH_5 PF01022.15 gi|433591067|ref|YP_007280563.1| - 0.0014 18.2 0.0 0.0023 17.5 0.0 1.4 1 1 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_7 PF02796.10 gi|433591067|ref|YP_007280563.1| - 0.0017 18.1 0.0 0.0024 17.6 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase HTH_29 PF13551.1 gi|433591067|ref|YP_007280563.1| - 0.002 18.2 0.0 0.0028 17.7 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn helix Sigma70_r4_2 PF08281.7 gi|433591067|ref|YP_007280563.1| - 0.0085 15.5 0.3 0.046 13.1 0.0 2.1 2 1 0 2 2 2 1 Sigma-70, region 4 HTH_CodY PF08222.6 gi|433591067|ref|YP_007280563.1| - 0.0099 15.1 0.0 0.017 14.4 0.0 1.4 1 0 0 1 1 1 1 CodY helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|433591067|ref|YP_007280563.1| - 0.021 14.5 0.0 0.029 14.1 0.0 1.4 1 1 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_30 PF13556.1 gi|433591067|ref|YP_007280563.1| - 0.027 14.0 0.0 0.042 13.4 0.0 1.3 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain ArsR PF09824.4 gi|433591067|ref|YP_007280563.1| - 0.042 13.1 0.0 0.052 12.8 0.0 1.1 1 0 0 1 1 1 0 ArsR transcriptional regulator Crp PF00325.15 gi|433591067|ref|YP_007280563.1| - 0.063 12.7 0.1 0.13 11.7 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, crp family MarR PF01047.17 gi|433591067|ref|YP_007280563.1| - 0.097 12.3 0.0 0.16 11.7 0.0 1.3 1 0 0 1 1 1 0 MarR family HTH_38 PF13936.1 gi|433591067|ref|YP_007280563.1| - 0.11 12.0 0.0 0.16 11.5 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain FUR PF01475.14 gi|433591067|ref|YP_007280563.1| - 0.13 12.1 0.0 0.17 11.8 0.0 1.2 1 0 0 1 1 1 0 Ferric uptake regulator family Rrf2 PF02082.15 gi|433591067|ref|YP_007280563.1| - 0.13 12.3 0.0 0.21 11.7 0.0 1.4 1 1 0 1 1 1 0 Transcriptional regulator HTH_22 PF13309.1 gi|433591067|ref|YP_007280563.1| - 0.14 11.8 0.0 0.28 10.9 0.0 1.5 1 0 0 1 1 1 0 HTH domain HTH_20 PF12840.2 gi|433591068|ref|YP_007280564.1| - 3.8e-12 45.8 1.6 5.6e-12 45.2 1.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|433591068|ref|YP_007280564.1| - 3.9e-10 38.9 0.0 5.5e-10 38.4 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|433591068|ref|YP_007280564.1| - 1.7e-08 33.9 0.8 2.8e-08 33.2 0.5 1.3 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.7 gi|433591068|ref|YP_007280564.1| - 5.4e-08 32.3 0.0 8.1e-08 31.7 0.0 1.3 1 0 0 1 1 1 1 HTH domain HTH_IclR PF09339.5 gi|433591068|ref|YP_007280564.1| - 5.6e-08 32.2 0.2 9.1e-08 31.5 0.1 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_5 PF01022.15 gi|433591068|ref|YP_007280564.1| - 2.1e-07 30.4 0.0 3e-07 29.9 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|433591068|ref|YP_007280564.1| - 1.6e-06 27.6 0.0 2.1e-06 27.3 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|433591068|ref|YP_007280564.1| - 7.2e-06 25.6 0.0 1.2e-05 24.9 0.0 1.4 1 0 0 1 1 1 1 MarR family PadR PF03551.9 gi|433591068|ref|YP_007280564.1| - 2.8e-05 23.8 0.0 4.6e-05 23.1 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_AsnC-type PF13404.1 gi|433591068|ref|YP_007280564.1| - 0.00014 21.2 1.7 0.00028 20.3 1.2 1.5 1 1 0 1 1 1 1 AsnC-type helix-turn-helix domain Rrf2 PF02082.15 gi|433591068|ref|YP_007280564.1| - 0.00057 19.9 0.0 0.00089 19.3 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator HTH_36 PF13730.1 gi|433591068|ref|YP_007280564.1| - 0.0013 18.8 0.0 0.002 18.2 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain FUR PF01475.14 gi|433591068|ref|YP_007280564.1| - 0.002 18.0 0.0 0.0029 17.5 0.0 1.2 1 0 0 1 1 1 1 Ferric uptake regulator family HTH_7 PF02796.10 gi|433591068|ref|YP_007280564.1| - 0.0063 16.3 0.0 0.013 15.3 0.0 1.7 1 1 0 1 1 1 1 Helix-turn-helix domain of resolvase GntR PF00392.16 gi|433591068|ref|YP_007280564.1| - 0.012 15.0 0.1 0.021 14.2 0.1 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family Fe_dep_repress PF01325.14 gi|433591068|ref|YP_007280564.1| - 0.022 14.7 0.0 0.036 14.0 0.0 1.3 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_29 PF13551.1 gi|433591068|ref|YP_007280564.1| - 0.023 14.8 0.5 0.075 13.1 0.2 1.9 1 1 1 2 2 2 0 Winged helix-turn helix Replic_Relax PF13814.1 gi|433591068|ref|YP_007280564.1| - 0.034 14.0 0.1 0.045 13.6 0.1 1.2 1 0 0 1 1 1 0 Replication-relaxation HTH_27 PF13463.1 gi|433591068|ref|YP_007280564.1| - 0.058 13.7 0.1 0.14 12.4 0.1 1.6 1 1 0 1 1 1 0 Winged helix DNA-binding domain TetR_N PF00440.18 gi|433591068|ref|YP_007280564.1| - 0.062 12.9 0.0 0.11 12.1 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family HTH_DeoR PF08220.7 gi|433591068|ref|YP_007280564.1| - 0.09 12.3 0.3 0.2 11.2 0.1 1.6 1 1 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_22 PF13309.1 gi|433591068|ref|YP_007280564.1| - 0.14 11.9 0.0 0.34 10.7 0.0 1.6 2 0 0 2 2 2 0 HTH domain Response_reg PF00072.19 gi|433591069|ref|YP_007280565.1| - 1.5e-18 66.8 1.3 2.3e-18 66.2 0.9 1.3 1 0 0 1 1 1 1 Response regulator receiver domain HalX PF08663.5 gi|433591069|ref|YP_007280565.1| - 8.4e-05 22.4 1.6 8.4e-05 22.4 1.1 1.9 2 0 0 2 2 2 1 HalX domain GAF_2 PF13185.1 gi|433591070|ref|YP_007280566.1| - 3.5e-17 63.2 2.1 3.7e-16 59.9 0.2 2.6 2 0 0 2 2 2 1 GAF domain HTH_10 PF04967.7 gi|433591070|ref|YP_007280566.1| - 1.2e-15 56.7 0.1 2.3e-15 55.8 0.0 1.5 1 0 0 1 1 1 1 HTH DNA binding domain GAF_3 PF13492.1 gi|433591070|ref|YP_007280566.1| - 5.4e-08 33.0 0.3 1.6e-06 28.2 0.0 3.1 3 1 0 3 3 3 1 GAF domain GAF PF01590.21 gi|433591070|ref|YP_007280566.1| - 7.1e-08 32.7 1.7 2e-07 31.2 0.0 2.7 4 1 0 4 4 4 1 GAF domain PAS_9 PF13426.1 gi|433591070|ref|YP_007280566.1| - 9.9e-05 22.6 0.0 0.00033 20.9 0.0 2.0 1 0 0 1 1 1 1 PAS domain PAS_4 PF08448.5 gi|433591070|ref|YP_007280566.1| - 0.00029 20.8 3.7 0.0028 17.6 0.0 3.8 3 1 0 3 3 3 1 PAS fold PAS PF00989.19 gi|433591070|ref|YP_007280566.1| - 0.0012 18.6 0.0 0.0037 17.0 0.0 1.9 1 0 0 1 1 1 1 PAS fold HTH_20 PF12840.2 gi|433591070|ref|YP_007280566.1| - 0.002 17.8 0.1 0.0083 15.9 0.1 2.1 1 0 0 1 1 1 1 Helix-turn-helix domain PAS_8 PF13188.1 gi|433591070|ref|YP_007280566.1| - 0.004 16.9 0.0 0.012 15.4 0.0 1.8 1 0 0 1 1 1 1 PAS domain GerE PF00196.14 gi|433591070|ref|YP_007280566.1| - 0.007 15.6 0.1 0.046 13.0 0.1 2.1 1 1 0 1 1 1 1 Bacterial regulatory proteins, luxR family Sigma70_r4_2 PF08281.7 gi|433591070|ref|YP_007280566.1| - 0.035 13.5 0.5 0.14 11.6 0.1 2.0 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_24 PF13412.1 gi|433591070|ref|YP_007280566.1| - 0.087 12.2 0.0 0.17 11.2 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HATPase_c PF02518.21 gi|433591071|ref|YP_007280567.1| - 1.7e-19 69.5 0.0 3.6e-19 68.5 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|433591071|ref|YP_007280567.1| - 2.3e-08 33.9 2.8 2.5e-08 33.7 0.5 2.0 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain HATPase_c_2 PF13581.1 gi|433591071|ref|YP_007280567.1| - 5.6e-05 22.9 0.2 0.00017 21.3 0.1 1.9 1 1 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.1 gi|433591071|ref|YP_007280567.1| - 0.0026 17.4 1.0 0.0031 17.1 0.0 1.6 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABC_tran PF00005.22 gi|433591072|ref|YP_007280568.1| - 2e-29 102.6 0.0 3e-29 102.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|433591072|ref|YP_007280568.1| - 5.1e-14 52.9 0.0 3.7e-08 33.6 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_10 PF12846.2 gi|433591072|ref|YP_007280568.1| - 0.0012 18.3 0.0 0.91 8.9 0.0 2.2 2 0 0 2 2 2 2 AAA-like domain DUF4162 PF13732.1 gi|433591072|ref|YP_007280568.1| - 0.004 17.6 0.0 0.007 16.8 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) DUF258 PF03193.11 gi|433591072|ref|YP_007280568.1| - 0.0047 16.1 0.0 0.0071 15.5 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_29 PF13555.1 gi|433591072|ref|YP_007280568.1| - 0.0062 16.0 0.0 0.012 15.1 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|433591072|ref|YP_007280568.1| - 0.0098 16.2 0.1 0.016 15.5 0.1 1.2 1 0 0 1 1 1 1 AAA domain MMR_HSR1 PF01926.18 gi|433591072|ref|YP_007280568.1| - 0.04 13.8 0.1 0.071 13.0 0.0 1.9 1 1 0 1 1 1 0 50S ribosome-binding GTPase SMC_N PF02463.14 gi|433591072|ref|YP_007280568.1| - 0.045 12.9 0.0 2.9 7.0 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|433591072|ref|YP_007280568.1| - 0.055 13.4 0.0 0.078 12.9 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain ABC2_membrane_2 PF12679.2 gi|433591073|ref|YP_007280569.1| - 1e-17 63.9 7.7 1.4e-17 63.4 5.3 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|433591073|ref|YP_007280569.1| - 1.9e-13 50.1 6.6 1.9e-13 50.1 4.6 1.3 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|433591073|ref|YP_007280569.1| - 0.00022 20.4 9.4 0.00022 20.4 6.5 1.5 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|433591073|ref|YP_007280569.1| - 0.0049 15.9 9.7 0.0069 15.4 6.2 1.5 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|433591073|ref|YP_007280569.1| - 0.0059 15.9 0.5 0.0094 15.2 0.4 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|433591074|ref|YP_007280570.1| - 1.2e-24 86.6 4.2 3.9e-24 84.9 2.9 1.7 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|433591074|ref|YP_007280570.1| - 1e-09 37.9 8.2 1.6e-09 37.3 5.7 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|433591074|ref|YP_007280570.1| - 0.0025 16.9 1.3 0.0025 16.9 0.9 1.6 1 1 1 2 2 2 1 ABC-2 family transporter protein DUF3093 PF11292.3 gi|433591074|ref|YP_007280570.1| - 0.57 9.9 4.5 1.2 8.9 0.7 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3093) HATPase_c PF02518.21 gi|433591075|ref|YP_007280571.1| - 1.8e-16 59.8 0.0 4.1e-16 58.6 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.1 gi|433591075|ref|YP_007280571.1| - 7.9e-07 28.9 0.7 2.5e-06 27.2 0.0 2.1 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain PAS_4 PF08448.5 gi|433591075|ref|YP_007280571.1| - 1.2e-05 25.3 0.4 0.00013 21.9 0.1 2.7 1 1 1 2 2 2 1 PAS fold PAS_8 PF13188.1 gi|433591075|ref|YP_007280571.1| - 2.7e-05 23.8 0.0 8.7e-05 22.2 0.0 1.8 1 0 0 1 1 1 1 PAS domain HATPase_c_3 PF13589.1 gi|433591075|ref|YP_007280571.1| - 0.00021 20.9 0.0 0.00049 19.7 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.19 gi|433591075|ref|YP_007280571.1| - 0.00049 19.8 0.0 0.001 18.8 0.0 1.5 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.1 gi|433591075|ref|YP_007280571.1| - 0.062 13.6 0.0 0.16 12.3 0.0 1.8 1 1 0 1 1 1 0 PAS domain SPC12 PF06645.8 gi|433591076|ref|YP_007280572.1| - 0.023 14.4 0.9 0.03 14.1 0.6 1.1 1 0 0 1 1 1 0 Microsomal signal peptidase 12 kDa subunit (SPC12) TM2 PF05154.11 gi|433591076|ref|YP_007280572.1| - 0.036 14.2 1.7 0.091 12.9 1.2 1.6 1 1 0 1 1 1 0 TM2 domain DUF1035 PF06281.7 gi|433591076|ref|YP_007280572.1| - 0.14 11.9 1.9 0.17 11.6 1.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1035) MitoNEET_N PF10660.4 gi|433591077|ref|YP_007280573.1| - 0.033 14.0 0.1 0.035 13.9 0.0 1.1 1 0 0 1 1 1 0 Iron-containing outer mitochondrial membrane protein N-terminus DUF2976 PF11190.3 gi|433591078|ref|YP_007280574.1| - 0.056 12.9 3.3 0.13 11.7 0.1 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF2976) LpxC PF03331.8 gi|433591078|ref|YP_007280574.1| - 0.14 11.0 0.0 0.16 10.8 0.0 1.1 1 0 0 1 1 1 0 UDP-3-O-acyl N-acetylglycosamine deacetylase OrfB_Zn_ribbon PF07282.6 gi|433591080|ref|YP_007280576.1| - 5.7e-22 77.1 0.4 1.1e-21 76.2 0.3 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Tubulin_3 PF14881.1 gi|433591080|ref|YP_007280576.1| - 0.028 13.9 0.1 0.069 12.6 0.1 1.7 1 0 0 1 1 1 0 Tubulin domain DUF4041 PF13250.1 gi|433591080|ref|YP_007280576.1| - 0.079 12.5 0.1 0.22 11.0 0.1 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4041) TFIIB PF00382.14 gi|433591081|ref|YP_007280577.1| - 6.2e-25 86.7 4.1 4.6e-10 39.1 0.1 3.3 3 0 0 3 3 3 3 Transcription factor TFIIB repeat HTH_AsnC-type PF13404.1 gi|433591081|ref|YP_007280577.1| - 4.4e-07 29.3 4.2 0.0026 17.2 0.0 3.6 4 0 0 4 4 4 2 AsnC-type helix-turn-helix domain HTH_Tnp_ISL3 PF13542.1 gi|433591081|ref|YP_007280577.1| - 5.6e-06 25.4 1.5 0.059 12.5 0.0 3.0 3 0 0 3 3 3 2 Helix-turn-helix domain of transposase family ISL3 HTH_11 PF08279.7 gi|433591081|ref|YP_007280577.1| - 1.5e-05 24.5 0.8 0.15 11.7 0.0 3.0 3 0 0 3 3 2 2 HTH domain HTH_23 PF13384.1 gi|433591081|ref|YP_007280577.1| - 2.3e-05 23.8 0.2 0.46 10.2 0.0 3.2 3 0 0 3 3 3 2 Homeodomain-like domain HTH_psq PF05225.11 gi|433591081|ref|YP_007280577.1| - 4.9e-05 22.7 0.3 0.28 10.7 0.1 2.5 2 0 0 2 2 2 2 helix-turn-helix, Psq domain HTH_24 PF13412.1 gi|433591081|ref|YP_007280577.1| - 0.00011 21.5 0.0 0.65 9.4 0.0 2.9 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding MerR PF00376.18 gi|433591081|ref|YP_007280577.1| - 0.00015 21.2 0.1 0.033 13.7 0.1 3.0 2 0 0 2 2 2 1 MerR family regulatory protein Sigma70_r4 PF04545.11 gi|433591081|ref|YP_007280577.1| - 0.00019 20.6 0.0 0.48 9.7 0.0 2.9 3 0 0 3 3 3 2 Sigma-70, region 4 Sigma70_r4_2 PF08281.7 gi|433591081|ref|YP_007280577.1| - 0.00033 20.0 0.1 0.38 10.2 0.1 2.7 2 0 0 2 2 2 2 Sigma-70, region 4 HTH_DeoR PF08220.7 gi|433591081|ref|YP_007280577.1| - 0.00036 19.9 5.5 0.21 11.1 0.1 3.5 3 0 0 3 3 3 2 DeoR-like helix-turn-helix domain HTH_38 PF13936.1 gi|433591081|ref|YP_007280577.1| - 0.0008 18.9 0.9 0.61 9.6 0.0 3.2 3 0 0 3 3 3 1 Helix-turn-helix domain HTH_Tnp_1 PF01527.15 gi|433591081|ref|YP_007280577.1| - 0.00099 19.0 0.7 3 7.8 0.0 3.3 4 0 0 4 4 4 2 Transposase HTH_28 PF13518.1 gi|433591081|ref|YP_007280577.1| - 0.0011 18.9 0.0 0.44 10.6 0.0 2.7 2 0 0 2 2 2 1 Helix-turn-helix domain GntR PF00392.16 gi|433591081|ref|YP_007280577.1| - 0.0016 17.8 0.0 1.7 8.1 0.0 2.5 2 0 0 2 2 2 2 Bacterial regulatory proteins, gntR family HTH_6 PF01418.12 gi|433591081|ref|YP_007280577.1| - 0.0035 17.0 1.4 0.38 10.5 0.0 3.6 4 0 0 4 4 3 1 Helix-turn-helix domain, rpiR family HTH_7 PF02796.10 gi|433591081|ref|YP_007280577.1| - 0.0041 16.9 1.2 9.8 6.1 0.0 3.4 3 0 0 3 3 3 0 Helix-turn-helix domain of resolvase HTH_IclR PF09339.5 gi|433591081|ref|YP_007280577.1| - 0.0044 16.5 0.7 0.8 9.3 0.1 3.2 3 0 0 3 3 3 1 IclR helix-turn-helix domain HTH_10 PF04967.7 gi|433591081|ref|YP_007280577.1| - 0.0072 15.8 1.6 4.9 6.8 0.0 3.6 4 0 0 4 4 3 1 HTH DNA binding domain HTH_5 PF01022.15 gi|433591081|ref|YP_007280577.1| - 0.0072 15.9 1.8 0.15 11.7 0.0 3.2 4 0 0 4 4 3 1 Bacterial regulatory protein, arsR family HTH_17 PF12728.2 gi|433591081|ref|YP_007280577.1| - 0.0073 16.5 0.0 0.4 10.9 0.0 2.6 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_3 PF01381.17 gi|433591081|ref|YP_007280577.1| - 0.0075 16.0 0.2 2 8.3 0.1 2.9 2 0 0 2 2 2 1 Helix-turn-helix MarR_2 PF12802.2 gi|433591081|ref|YP_007280577.1| - 0.0086 15.7 0.4 7.8 6.2 0.0 3.1 4 0 0 4 4 3 0 MarR family Rrf2 PF02082.15 gi|433591081|ref|YP_007280577.1| - 0.01 15.9 0.0 9.8 6.3 0.0 3.2 3 0 0 3 3 3 0 Transcriptional regulator HTH_31 PF13560.1 gi|433591081|ref|YP_007280577.1| - 0.032 14.4 1.4 3.6 7.8 0.1 3.0 3 0 0 3 3 2 0 Helix-turn-helix domain MerR_1 PF13411.1 gi|433591081|ref|YP_007280577.1| - 0.043 13.5 0.0 0.42 10.4 0.0 2.3 2 0 0 2 2 2 0 MerR HTH family regulatory protein TetR_N PF00440.18 gi|433591081|ref|YP_007280577.1| - 0.096 12.3 4.5 1.6 8.4 0.1 3.7 4 0 0 4 4 4 0 Bacterial regulatory proteins, tetR family HHH PF00633.18 gi|433591081|ref|YP_007280577.1| - 0.11 12.3 0.0 0.6 9.9 0.0 2.3 2 0 0 2 2 2 0 Helix-hairpin-helix motif UPF0122 PF04297.9 gi|433591081|ref|YP_007280577.1| - 0.5 10.3 4.8 2.4 8.2 0.0 3.3 4 0 0 4 4 4 0 Putative helix-turn-helix protein, YlxM / p13 like DUF1283 PF06932.6 gi|433591082|ref|YP_007280578.1| - 0.11 12.5 0.1 0.2 11.6 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1283) DDE_Tnp_1 PF01609.16 gi|433591083|ref|YP_007280579.1| - 7.6e-11 41.9 2.6 1.3e-10 41.1 1.8 1.4 1 0 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.6 gi|433591083|ref|YP_007280579.1| - 0.021 14.6 0.1 0.061 13.2 0.1 1.8 1 0 0 1 1 1 0 Transposase domain (DUF772) DDE_Tnp_1_assoc PF13808.1 gi|433591083|ref|YP_007280579.1| - 0.089 12.4 0.2 0.18 11.5 0.1 1.6 1 0 0 1 1 1 0 DDE_Tnp_1-associated MatE PF01554.13 gi|433591085|ref|YP_007280581.1| - 7.9e-59 197.9 33.7 2.2e-33 115.1 10.5 2.5 2 0 0 2 2 2 2 MatE Polysacc_synt_C PF14667.1 gi|433591085|ref|YP_007280581.1| - 4.3e-07 29.8 13.2 4.3e-07 29.8 9.1 4.4 3 1 0 3 3 3 2 Polysaccharide biosynthesis C-terminal domain PKD PF00801.15 gi|433591085|ref|YP_007280581.1| - 0.095 12.4 0.4 0.22 11.2 0.3 1.6 1 0 0 1 1 1 0 PKD domain Tom5 PF10642.4 gi|433591085|ref|YP_007280581.1| - 0.17 11.5 2.4 0.77 9.4 0.3 2.6 2 0 0 2 2 2 0 Mitochondrial import receptor subunit or translocase TetR_N PF00440.18 gi|433591086|ref|YP_007280582.1| - 2.4e-12 46.2 0.1 4.9e-12 45.2 0.1 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_6 PF13977.1 gi|433591086|ref|YP_007280582.1| - 2.5e-09 37.1 0.2 3.6e-09 36.6 0.1 1.3 1 0 0 1 1 1 1 Bacterial transcriptional repressor HTH_38 PF13936.1 gi|433591086|ref|YP_007280582.1| - 0.078 12.5 0.0 0.14 11.6 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain ELFV_dehydrog PF00208.16 gi|433591087|ref|YP_007280583.1| - 2e-67 227.3 0.0 3.6e-67 226.5 0.0 1.4 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.13 gi|433591087|ref|YP_007280583.1| - 9.8e-51 170.7 0.1 1.7e-50 169.9 0.0 1.4 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.14 gi|433591087|ref|YP_007280583.1| - 0.0036 16.4 0.0 0.0077 15.3 0.0 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.7 gi|433591087|ref|YP_007280583.1| - 0.0091 15.3 0.0 0.015 14.6 0.0 1.3 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain HrcA_DNA-bdg PF03444.10 gi|433591088|ref|YP_007280584.1| - 1.8e-37 126.6 0.1 2.6e-37 126.1 0.1 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Rrf2 PF02082.15 gi|433591088|ref|YP_007280584.1| - 6.4e-09 35.8 0.0 9.4e-09 35.2 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator HTH_11 PF08279.7 gi|433591088|ref|YP_007280584.1| - 8.3e-07 28.5 0.0 1.3e-06 27.9 0.0 1.3 1 0 0 1 1 1 1 HTH domain Phage_terminase PF10668.4 gi|433591088|ref|YP_007280584.1| - 0.00062 19.4 0.0 0.0011 18.6 0.0 1.3 1 0 0 1 1 1 1 Phage terminase small subunit TrmB PF01978.14 gi|433591088|ref|YP_007280584.1| - 0.0044 16.7 0.0 0.0075 15.9 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|433591088|ref|YP_007280584.1| - 0.057 12.8 0.1 0.11 11.9 0.1 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|433591088|ref|YP_007280584.1| - 0.066 13.0 0.0 0.13 12.0 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_38 PF13936.1 gi|433591088|ref|YP_007280584.1| - 0.071 12.6 0.0 0.19 11.2 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain IclR PF01614.13 gi|433591089|ref|YP_007280585.1| - 1.7e-24 85.9 0.2 6e-24 84.1 0.0 1.9 2 0 0 2 2 2 1 Bacterial transcriptional regulator HTH_IclR PF09339.5 gi|433591089|ref|YP_007280585.1| - 7.8e-08 31.7 0.7 2.1e-07 30.4 0.2 2.0 2 0 0 2 2 2 1 IclR helix-turn-helix domain TrmB PF01978.14 gi|433591089|ref|YP_007280585.1| - 6e-05 22.6 0.0 0.0002 20.9 0.0 1.8 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.15 gi|433591089|ref|YP_007280585.1| - 6.9e-05 22.4 0.3 0.00024 20.6 0.1 2.0 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|433591089|ref|YP_007280585.1| - 0.00014 21.1 0.6 0.00026 20.2 0.1 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.7 gi|433591089|ref|YP_007280585.1| - 0.00026 20.5 0.1 0.00074 19.1 0.1 1.8 1 0 0 1 1 1 1 HTH domain MarR PF01047.17 gi|433591089|ref|YP_007280585.1| - 0.0004 20.0 0.8 0.00093 18.8 0.2 1.9 2 0 0 2 2 2 1 MarR family MarR_2 PF12802.2 gi|433591089|ref|YP_007280585.1| - 0.00043 19.9 0.2 0.0016 18.0 0.0 2.0 2 0 0 2 2 1 1 MarR family HTH_20 PF12840.2 gi|433591089|ref|YP_007280585.1| - 0.00055 19.6 0.2 0.0019 17.9 0.1 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_40 PF14493.1 gi|433591089|ref|YP_007280585.1| - 0.0024 18.0 0.2 0.0045 17.1 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain B-block_TFIIIC PF04182.7 gi|433591089|ref|YP_007280585.1| - 0.022 14.5 0.0 0.039 13.7 0.0 1.3 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC HTH_DeoR PF08220.7 gi|433591089|ref|YP_007280585.1| - 0.027 14.0 0.1 0.052 13.0 0.1 1.5 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain EAP30 PF04157.11 gi|433591089|ref|YP_007280585.1| - 0.029 13.5 0.1 0.043 12.9 0.1 1.3 1 0 0 1 1 1 0 EAP30/Vps36 family Sulfolobus_pRN PF05584.6 gi|433591089|ref|YP_007280585.1| - 0.031 14.2 0.2 0.72 9.8 0.1 2.3 2 0 0 2 2 2 0 Sulfolobus plasmid regulatory protein HTH_34 PF13601.1 gi|433591089|ref|YP_007280585.1| - 0.039 13.9 0.1 0.095 12.7 0.1 1.7 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_27 PF13463.1 gi|433591089|ref|YP_007280585.1| - 0.039 14.2 0.1 0.16 12.2 0.0 2.0 2 0 0 2 2 1 0 Winged helix DNA-binding domain Sigma70_r4 PF04545.11 gi|433591089|ref|YP_007280585.1| - 0.049 12.9 0.0 0.21 10.9 0.0 2.0 2 0 0 2 2 2 0 Sigma-70, region 4 RPA_C PF08784.6 gi|433591089|ref|YP_007280585.1| - 0.056 13.8 0.0 0.14 12.5 0.0 1.7 1 0 0 1 1 1 0 Replication protein A C terminal HTH_10 PF04967.7 gi|433591089|ref|YP_007280585.1| - 0.084 12.4 0.1 0.2 11.2 0.1 1.7 1 0 0 1 1 1 0 HTH DNA binding domain AMP-binding PF00501.23 gi|433591090|ref|YP_007280586.1| - 7.6e-83 278.2 0.0 1e-82 277.8 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|433591090|ref|YP_007280586.1| - 6.4e-09 36.6 0.2 1.4e-08 35.5 0.1 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain DMRL_synthase PF00885.14 gi|433591090|ref|YP_007280586.1| - 0.1 12.2 1.1 6.4 6.4 0.0 2.2 2 0 0 2 2 2 0 6,7-dimethyl-8-ribityllumazine synthase TrkA_N PF02254.13 gi|433591093|ref|YP_007280589.1| - 6.2e-47 158.3 14.0 3.8e-24 84.9 0.2 3.0 4 0 0 4 4 3 2 TrkA-N domain TrkA_C PF02080.16 gi|433591093|ref|YP_007280589.1| - 1.4e-29 101.4 15.4 1.8e-14 53.0 0.2 4.1 4 0 0 4 4 4 2 TrkA-C domain NAD_binding_7 PF13241.1 gi|433591093|ref|YP_007280589.1| - 1.4e-13 50.9 2.4 1.8e-07 31.3 0.9 2.8 2 0 0 2 2 2 2 Putative NAD(P)-binding 3HCDH_N PF02737.13 gi|433591093|ref|YP_007280589.1| - 1.3e-07 31.4 0.2 0.0028 17.3 0.1 2.7 2 1 0 2 2 2 2 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|433591093|ref|YP_007280589.1| - 8e-07 29.4 2.0 0.042 14.2 0.1 3.7 3 1 1 4 4 3 2 NADP oxidoreductase coenzyme F420-dependent CPSase_L_chain PF00289.17 gi|433591093|ref|YP_007280589.1| - 3.9e-06 26.9 0.7 0.00062 19.8 0.0 2.9 3 0 0 3 3 2 1 Carbamoyl-phosphate synthase L chain, N-terminal domain NAD_Gly3P_dh_N PF01210.18 gi|433591093|ref|YP_007280589.1| - 4.5e-06 26.4 0.0 0.00046 19.9 0.0 2.7 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus UDPG_MGDP_dh_N PF03721.9 gi|433591093|ref|YP_007280589.1| - 2e-05 24.0 0.5 0.00023 20.6 0.1 2.7 3 0 0 3 3 3 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Saccharop_dh PF03435.13 gi|433591093|ref|YP_007280589.1| - 3.4e-05 23.0 3.0 0.015 14.2 1.1 2.2 2 0 0 2 2 2 2 Saccharopine dehydrogenase NAD_binding_10 PF13460.1 gi|433591093|ref|YP_007280589.1| - 4.5e-05 23.5 8.7 0.0046 16.9 0.0 2.8 3 0 0 3 3 3 2 NADH(P)-binding ApbA PF02558.11 gi|433591093|ref|YP_007280589.1| - 5.4e-05 22.6 0.3 0.0025 17.2 0.1 2.4 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA XdhC_C PF13478.1 gi|433591093|ref|YP_007280589.1| - 5.9e-05 23.4 4.8 0.13 12.5 0.0 3.1 4 0 0 4 4 3 2 XdhC Rossmann domain Semialdhyde_dh PF01118.19 gi|433591093|ref|YP_007280589.1| - 7e-05 23.1 0.3 0.52 10.6 0.1 2.8 3 0 0 3 3 3 2 Semialdehyde dehydrogenase, NAD binding domain NAD_binding_2 PF03446.10 gi|433591093|ref|YP_007280589.1| - 8e-05 22.5 0.1 0.21 11.4 0.1 2.6 2 0 0 2 2 2 2 NAD binding domain of 6-phosphogluconate dehydrogenase Pyr_redox PF00070.22 gi|433591093|ref|YP_007280589.1| - 8.7e-05 22.8 2.2 0.36 11.2 0.2 3.4 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase NmrA PF05368.8 gi|433591093|ref|YP_007280589.1| - 0.00044 19.5 0.1 0.29 10.3 0.1 2.7 2 1 1 3 3 3 1 NmrA-like family Shikimate_DH PF01488.15 gi|433591093|ref|YP_007280589.1| - 0.00069 19.7 1.4 0.012 15.7 0.4 2.4 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase 2-Hacid_dh_C PF02826.14 gi|433591093|ref|YP_007280589.1| - 0.0027 16.8 0.0 1.9 7.6 0.0 2.4 2 0 0 2 2 2 2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.16 gi|433591093|ref|YP_007280589.1| - 0.0039 16.7 0.2 1.9 8.0 0.1 2.8 2 1 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain FAD_binding_3 PF01494.14 gi|433591093|ref|YP_007280589.1| - 0.0049 15.9 0.0 0.34 9.9 0.0 2.2 2 0 0 2 2 2 1 FAD binding domain Rossmann-like PF10727.4 gi|433591093|ref|YP_007280589.1| - 0.0091 15.7 7.6 0.72 9.5 0.9 3.1 2 1 1 3 3 3 2 Rossmann-like domain PE PF00934.15 gi|433591093|ref|YP_007280589.1| - 0.0093 16.0 0.1 0.026 14.6 0.0 1.8 1 0 0 1 1 1 1 PE family ADH_zinc_N PF00107.21 gi|433591093|ref|YP_007280589.1| - 0.021 14.3 2.1 0.095 12.2 0.0 2.6 3 0 0 3 3 2 0 Zinc-binding dehydrogenase Pyr_redox_3 PF13738.1 gi|433591093|ref|YP_007280589.1| - 0.044 13.8 0.2 0.17 11.9 0.1 2.0 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|433591093|ref|YP_007280589.1| - 0.19 11.7 0.4 7.5 6.6 0.1 2.5 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain ThiF PF00899.16 gi|433591093|ref|YP_007280589.1| - 0.2 11.4 4.5 1.9 8.3 0.3 3.7 3 1 1 4 4 4 0 ThiF family ATPgrasp_Ter PF15632.1 gi|433591096|ref|YP_007280592.1| - 0.002 16.9 0.0 0.0022 16.7 0.0 1.1 1 0 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon DS PF01916.12 gi|433591099|ref|YP_007280595.1| - 1e-95 320.3 0.0 1.1e-95 320.1 0.0 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase CitF PF04223.7 gi|433591099|ref|YP_007280595.1| - 0.1 11.2 0.0 0.14 10.7 0.0 1.1 1 0 0 1 1 1 0 Citrate lyase, alpha subunit (CitF) HEM4 PF02602.10 gi|433591100|ref|YP_007280596.1| - 9.3e-40 136.2 0.5 1.1e-39 136.0 0.3 1.0 1 0 0 1 1 1 1 Uroporphyrinogen-III synthase HemD DDE_3 PF13358.1 gi|433591101|ref|YP_007280597.1| - 1e-24 86.9 0.0 2.9e-24 85.4 0.0 1.7 2 0 0 2 2 2 1 DDE superfamily endonuclease HTH_33 PF13592.1 gi|433591101|ref|YP_007280597.1| - 4e-19 67.9 1.0 1.7e-18 65.8 0.0 2.3 2 0 0 2 2 2 1 Winged helix-turn helix HTH_29 PF13551.1 gi|433591101|ref|YP_007280597.1| - 3.7e-17 62.4 1.4 7.9e-17 61.4 0.1 2.1 1 1 1 2 2 2 1 Winged helix-turn helix HTH_28 PF13518.1 gi|433591101|ref|YP_007280597.1| - 7.6e-10 38.5 0.6 1.2e-08 34.7 0.1 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_32 PF13565.1 gi|433591101|ref|YP_007280597.1| - 1.7e-06 28.7 0.3 1.7e-06 28.7 0.2 3.1 2 1 2 4 4 4 1 Homeodomain-like domain HTH_23 PF13384.1 gi|433591101|ref|YP_007280597.1| - 0.00023 20.6 0.0 0.00063 19.3 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain rve PF00665.21 gi|433591101|ref|YP_007280597.1| - 0.0017 18.4 0.0 0.0038 17.3 0.0 1.6 1 0 0 1 1 1 1 Integrase core domain DDE_Tnp_ISAZ013 PF07592.6 gi|433591101|ref|YP_007280597.1| - 0.0019 16.9 0.0 0.23 10.1 0.0 2.2 2 0 0 2 2 2 2 Rhodopirellula transposase DDE domain HTH_Tnp_IS630 PF01710.11 gi|433591101|ref|YP_007280597.1| - 0.019 14.6 0.0 0.033 13.8 0.0 1.4 1 0 0 1 1 1 0 Transposase Sigma70_ECF PF07638.6 gi|433591101|ref|YP_007280597.1| - 0.038 13.6 0.0 0.066 12.8 0.0 1.4 1 0 0 1 1 1 0 ECF sigma factor Imm15 PF15590.1 gi|433591103|ref|YP_007280599.1| - 0.12 11.4 0.0 0.31 10.1 0.0 1.7 1 0 0 1 1 1 0 Immunity protein 15 LBP_BPI_CETP_C PF02886.12 gi|433591103|ref|YP_007280599.1| - 0.2 10.8 0.0 0.32 10.2 0.0 1.2 1 0 0 1 1 1 0 LBP / BPI / CETP family, C-terminal domain Exonuc_VII_S PF02609.11 gi|433591104|ref|YP_007280600.1| - 0.071 12.8 0.3 0.2 11.4 0.0 1.9 2 0 0 2 2 2 0 Exonuclease VII small subunit TFIIE_alpha PF02002.12 gi|433591105|ref|YP_007280601.1| - 5.9e-07 28.9 0.4 6.9e-07 28.7 0.3 1.1 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_20 PF12840.2 gi|433591105|ref|YP_007280601.1| - 1.4e-05 24.8 0.1 2.2e-05 24.1 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.1 gi|433591105|ref|YP_007280601.1| - 4.9e-05 23.5 0.1 9e-05 22.7 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_24 PF13412.1 gi|433591105|ref|YP_007280601.1| - 0.0002 20.7 0.1 0.00033 19.9 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.17 gi|433591105|ref|YP_007280601.1| - 0.02 14.5 0.0 0.033 13.9 0.0 1.3 1 0 0 1 1 1 0 MarR family TrmB PF01978.14 gi|433591105|ref|YP_007280601.1| - 0.048 13.3 0.1 0.071 12.8 0.1 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|433591105|ref|YP_007280601.1| - 0.12 12.0 0.0 0.2 11.3 0.0 1.3 1 0 0 1 1 1 0 MarR family Rrf2 PF02082.15 gi|433591105|ref|YP_007280601.1| - 0.15 12.2 0.0 0.24 11.5 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator EF-hand_7 PF13499.1 gi|433591105|ref|YP_007280601.1| - 0.28 11.3 1.7 13 6.0 0.0 2.3 2 0 0 2 2 2 0 EF-hand domain pair DDE_Tnp_IS240 PF13610.1 gi|433591106|ref|YP_007280602.1| - 1.1e-25 90.2 0.0 2.2e-25 89.2 0.0 1.5 2 0 0 2 2 2 1 DDE domain rve_3 PF13683.1 gi|433591106|ref|YP_007280602.1| - 4.2e-11 42.2 0.9 4.2e-11 42.2 0.6 1.6 2 0 0 2 2 2 1 Integrase core domain DDE_Tnp_IS66 PF03050.9 gi|433591106|ref|YP_007280602.1| - 7.6e-05 22.0 0.1 0.0002 20.6 0.0 1.7 1 1 0 1 1 1 1 Transposase IS66 family Phytochelatin PF05023.9 gi|433591106|ref|YP_007280602.1| - 0.014 14.3 0.8 0.02 13.8 0.0 1.7 2 0 0 2 2 2 0 Phytochelatin synthase DUF2384 PF09722.5 gi|433591106|ref|YP_007280602.1| - 0.017 14.9 0.9 1.3 8.8 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2384) rve PF00665.21 gi|433591106|ref|YP_007280602.1| - 0.046 13.8 0.1 0.6 10.2 0.0 2.4 3 0 0 3 3 3 0 Integrase core domain HTH_28 PF13518.1 gi|433591106|ref|YP_007280602.1| - 0.061 13.3 0.7 4.6 7.3 0.1 2.6 2 0 0 2 2 2 0 Helix-turn-helix domain rve_2 PF13333.1 gi|433591106|ref|YP_007280602.1| - 0.13 12.3 0.0 0.23 11.5 0.0 1.4 1 0 0 1 1 1 0 Integrase core domain Phage_integrase PF00589.17 gi|433591107|ref|YP_007280603.1| - 7.9e-14 51.6 0.0 8e-13 48.4 0.0 2.1 1 1 0 1 1 1 1 Phage integrase family Phage_int_SAM_1 PF02899.12 gi|433591107|ref|YP_007280603.1| - 2.3e-06 27.6 0.0 5.2e-06 26.5 0.0 1.5 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.1 gi|433591107|ref|YP_007280603.1| - 7.4e-05 22.9 0.0 0.00016 21.9 0.0 1.5 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain DUF1049 PF06305.6 gi|433591111|ref|YP_007280607.1| - 3 7.3 7.4 6.1 6.4 5.0 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF1049) Ric8 PF10165.4 gi|433591112|ref|YP_007280608.1| - 0.05 12.4 0.0 0.088 11.6 0.0 1.3 1 0 0 1 1 1 0 Guanine nucleotide exchange factor synembryn Phage_integrase PF00589.17 gi|433591113|ref|YP_007280609.1| - 2.1e-14 53.5 0.1 1.8e-10 40.7 0.0 2.3 2 0 0 2 2 2 2 Phage integrase family Phage_int_SAM_1 PF02899.12 gi|433591113|ref|YP_007280609.1| - 6.6e-06 26.1 1.7 7.2e-05 22.8 0.0 3.4 4 1 0 4 4 4 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.1 gi|433591113|ref|YP_007280609.1| - 0.0057 16.9 2.0 0.12 12.6 0.0 3.6 3 1 0 3 3 3 1 Phage integrase, N-terminal SAM-like domain GerE PF00196.14 gi|433591113|ref|YP_007280609.1| - 0.029 13.6 0.0 0.078 12.3 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family HTH_40 PF14493.1 gi|433591113|ref|YP_007280609.1| - 0.047 13.9 0.7 0.12 12.6 0.1 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_38 PF13936.1 gi|433591113|ref|YP_007280609.1| - 0.19 11.3 2.2 1.7 8.2 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain DHO_dh PF01180.16 gi|433591114|ref|YP_007280610.1| - 0.098 11.5 0.0 0.11 11.4 0.0 1.1 1 0 0 1 1 1 0 Dihydroorotate dehydrogenase HHH_5 PF14520.1 gi|433591116|ref|YP_007280612.1| - 1.1e-09 38.2 0.0 3.1e-09 36.8 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix domain Cdd1 PF11731.3 gi|433591116|ref|YP_007280612.1| - 0.0027 17.5 0.0 0.0073 16.2 0.0 1.7 1 0 0 1 1 1 1 Pathogenicity locus DmpG_comm PF07836.6 gi|433591119|ref|YP_007280615.1| - 0.06 12.7 0.1 2.5 7.5 0.0 2.3 2 0 0 2 2 2 0 DmpG-like communication domain Chromo PF00385.19 gi|433591119|ref|YP_007280615.1| - 0.086 12.5 1.1 0.25 11.0 0.8 1.8 1 0 0 1 1 1 0 Chromo (CHRromatin Organisation MOdifier) domain OCD_Mu_crystall PF02423.10 gi|433591120|ref|YP_007280616.1| - 1e-93 313.5 1.6 1.2e-93 313.3 1.1 1.0 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family Shikimate_DH PF01488.15 gi|433591120|ref|YP_007280616.1| - 0.0037 17.3 0.0 0.0065 16.5 0.0 1.3 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase DDE_Tnp_1 PF01609.16 gi|433591121|ref|YP_007280617.1| - 8.1e-24 84.3 0.3 1.1e-23 83.9 0.2 1.1 1 0 0 1 1 1 1 Transposase DDE domain Aminotran_3 PF00202.16 gi|433591122|ref|YP_007280618.1| - 4.3e-87 292.1 0.0 6.5e-87 291.5 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-III Beta_elim_lyase PF01212.16 gi|433591122|ref|YP_007280618.1| - 5.6e-05 22.4 0.0 9.1e-05 21.7 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase SPOUT_MTase PF02590.12 gi|433591122|ref|YP_007280618.1| - 0.094 12.4 0.0 0.17 11.6 0.0 1.3 1 0 0 1 1 1 0 Predicted SPOUT methyltransferase SOR_SNZ PF01680.12 gi|433591123|ref|YP_007280619.1| - 7.1e-101 336.0 7.7 9.4e-101 335.7 5.4 1.1 1 0 0 1 1 1 1 SOR/SNZ family ThiG PF05690.9 gi|433591123|ref|YP_007280619.1| - 3.6e-10 39.3 4.0 5.9e-06 25.5 0.1 2.2 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG Dus PF01207.12 gi|433591123|ref|YP_007280619.1| - 0.0055 15.5 2.3 0.26 10.0 0.1 2.3 1 1 1 2 2 2 2 Dihydrouridine synthase (Dus) IGPS PF00218.16 gi|433591123|ref|YP_007280619.1| - 0.046 12.7 0.1 0.3 10.0 0.0 2.2 2 1 0 2 2 2 0 Indole-3-glycerol phosphate synthase OMPdecase PF00215.19 gi|433591123|ref|YP_007280619.1| - 0.051 12.9 0.1 11 5.3 0.0 2.4 1 1 1 2 2 2 0 Orotidine 5'-phosphate decarboxylase / HUMPS family MttA_Hcf106 PF02416.11 gi|433591123|ref|YP_007280619.1| - 0.11 11.6 2.6 0.49 9.5 0.1 2.7 3 0 0 3 3 3 0 mttA/Hcf106 family Syndecan PF01034.15 gi|433591124|ref|YP_007280620.1| - 0.0021 17.6 0.0 0.0024 17.4 0.0 1.1 1 0 0 1 1 1 1 Syndecan domain Cas_csx3 PF09620.5 gi|433591124|ref|YP_007280620.1| - 0.11 12.3 0.1 0.12 12.2 0.0 1.1 1 0 0 1 1 1 0 CRISPR-associated protein (Cas_csx3) SSF PF00474.12 gi|433591125|ref|YP_007280621.1| - 9.6e-66 222.0 30.2 1.3e-65 221.6 20.9 1.2 1 0 0 1 1 1 1 Sodium:solute symporter family BCLP PF12304.3 gi|433591125|ref|YP_007280621.1| - 0.0058 16.0 1.0 0.016 14.6 0.2 2.0 1 1 0 1 1 1 1 Beta-casein like protein Aldedh PF00171.17 gi|433591127|ref|YP_007280623.1| - 4.2e-135 450.6 0.1 5e-135 450.3 0.1 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.9 gi|433591127|ref|YP_007280623.1| - 0.12 11.0 0.0 0.26 9.9 0.0 1.5 1 1 0 1 1 1 0 Acyl-CoA reductase (LuxC) Aminotran_3 PF00202.16 gi|433591128|ref|YP_007280624.1| - 3.9e-93 311.9 0.0 1.4e-92 310.2 0.0 1.7 2 0 0 2 2 2 1 Aminotransferase class-III Beta_elim_lyase PF01212.16 gi|433591128|ref|YP_007280624.1| - 0.014 14.5 0.0 0.035 13.2 0.0 1.8 1 1 0 1 1 1 0 Beta-eliminating lyase Aminotran_1_2 PF00155.16 gi|433591128|ref|YP_007280624.1| - 0.087 11.7 0.0 0.23 10.3 0.0 1.6 2 0 0 2 2 2 0 Aminotransferase class I and II AsnC_trans_reg PF01037.16 gi|433591129|ref|YP_007280625.1| - 9.1e-12 44.5 0.5 1.8e-11 43.5 0.3 1.5 1 0 0 1 1 1 1 AsnC family HTH_24 PF13412.1 gi|433591129|ref|YP_007280625.1| - 5.3e-11 41.7 0.1 7.9e-11 41.1 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|433591129|ref|YP_007280625.1| - 5e-09 35.5 0.4 8.8e-09 34.7 0.3 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_20 PF12840.2 gi|433591129|ref|YP_007280625.1| - 1.1e-06 28.3 0.0 2.3e-06 27.3 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|433591129|ref|YP_007280625.1| - 3.3e-06 26.6 0.1 6.3e-06 25.7 0.1 1.5 1 0 0 1 1 1 1 HTH domain MarR_2 PF12802.2 gi|433591129|ref|YP_007280625.1| - 1.4e-05 24.6 0.0 2.8e-05 23.6 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_10 PF04967.7 gi|433591129|ref|YP_007280625.1| - 0.00027 20.4 0.0 0.00072 19.0 0.0 1.7 1 0 0 1 1 1 1 HTH DNA binding domain HTH_IclR PF09339.5 gi|433591129|ref|YP_007280625.1| - 0.0015 18.0 0.0 0.0036 16.8 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_WhiA PF02650.9 gi|433591129|ref|YP_007280625.1| - 0.0021 18.3 0.0 0.0057 17.0 0.0 1.7 2 0 0 2 2 1 1 WhiA C-terminal HTH domain HTH_27 PF13463.1 gi|433591129|ref|YP_007280625.1| - 0.0038 17.5 0.1 0.0086 16.3 0.1 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain NapD PF03927.8 gi|433591129|ref|YP_007280625.1| - 0.0049 16.6 0.2 0.0076 16.0 0.1 1.4 1 0 0 1 1 1 1 NapD protein HTH_5 PF01022.15 gi|433591129|ref|YP_007280625.1| - 0.0053 16.4 0.1 0.01 15.4 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Rrf2 PF02082.15 gi|433591129|ref|YP_007280625.1| - 0.0066 16.5 0.0 0.014 15.5 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator MarR PF01047.17 gi|433591129|ref|YP_007280625.1| - 0.012 15.3 0.0 0.021 14.5 0.0 1.4 1 0 0 1 1 1 0 MarR family B-block_TFIIIC PF04182.7 gi|433591129|ref|YP_007280625.1| - 0.013 15.3 0.0 0.021 14.6 0.0 1.4 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC HTH_DeoR PF08220.7 gi|433591129|ref|YP_007280625.1| - 0.019 14.5 0.1 0.034 13.6 0.1 1.4 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain GYD PF08734.6 gi|433591129|ref|YP_007280625.1| - 0.021 14.5 0.2 0.055 13.1 0.1 1.7 1 1 0 1 1 1 0 GYD domain HTH_Crp_2 PF13545.1 gi|433591129|ref|YP_007280625.1| - 0.025 14.3 0.0 0.052 13.3 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain UPF0122 PF04297.9 gi|433591129|ref|YP_007280625.1| - 0.028 14.4 0.0 0.064 13.2 0.0 1.6 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like HTH_30 PF13556.1 gi|433591129|ref|YP_007280625.1| - 0.06 12.9 0.0 0.12 11.9 0.0 1.5 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain ACT_4 PF13291.1 gi|433591129|ref|YP_007280625.1| - 0.07 13.4 0.5 0.22 11.9 0.2 1.9 1 1 0 1 1 1 0 ACT domain Fe_dep_repress PF01325.14 gi|433591129|ref|YP_007280625.1| - 0.092 12.6 0.0 0.19 11.6 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain Phage_CI_repr PF07022.8 gi|433591129|ref|YP_007280625.1| - 0.11 12.6 0.0 0.47 10.5 0.0 2.0 2 0 0 2 2 2 0 Bacteriophage CI repressor helix-turn-helix domain TFIIE_alpha PF02002.12 gi|433591129|ref|YP_007280625.1| - 0.14 11.6 0.8 1.9 8.0 0.1 2.1 1 1 1 2 2 2 0 TFIIE alpha subunit DUF998 PF06197.8 gi|433591130|ref|YP_007280626.1| - 0.1 11.8 4.2 0.13 11.5 2.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF998) TBP PF00352.16 gi|433591131|ref|YP_007280627.1| - 1.9e-63 209.8 0.0 4.2e-31 106.1 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.3 gi|433591131|ref|YP_007280627.1| - 0.0056 16.7 0.0 1.1 9.4 0.0 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) DUF3773 PF12608.3 gi|433591131|ref|YP_007280627.1| - 0.017 15.1 0.0 0.26 11.3 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3773) DUF1390 PF07150.6 gi|433591131|ref|YP_007280627.1| - 0.065 12.5 0.0 0.69 9.2 0.0 2.1 1 1 0 2 2 2 0 Protein of unknown function (DUF1390) CENP-F_C_Rb_bdg PF10490.4 gi|433591131|ref|YP_007280627.1| - 0.14 11.4 0.3 10 5.5 0.1 2.4 2 0 0 2 2 2 0 Rb-binding domain of kinetochore protein Cenp-F/LEK1 SWIM PF04434.12 gi|433591132|ref|YP_007280628.1| - 0.032 13.7 0.0 0.076 12.5 0.0 1.6 1 0 0 1 1 1 0 SWIM zinc finger DUF955 PF06114.8 gi|433591137|ref|YP_007280633.1| - 0.00037 20.1 0.0 0.0009 18.9 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF955) SprT-like PF10263.4 gi|433591137|ref|YP_007280633.1| - 0.005 16.5 1.1 0.15 11.7 0.0 2.4 2 1 0 2 2 2 1 SprT-like family Peptidase_MA_2 PF13485.1 gi|433591137|ref|YP_007280633.1| - 0.011 15.7 0.2 0.076 13.0 0.0 2.1 2 0 0 2 2 2 0 Peptidase MA superfamily DUF2268 PF10026.4 gi|433591137|ref|YP_007280633.1| - 0.044 13.1 0.0 0.12 11.7 0.0 1.6 2 0 0 2 2 2 0 Predicted Zn-dependent protease (DUF2268) Cdc6_C PF09079.6 gi|433591140|ref|YP_007280636.1| - 1.3e-21 76.1 0.0 3.2e-21 74.8 0.0 1.7 1 0 0 1 1 1 1 CDC6, C terminal AAA_16 PF13191.1 gi|433591140|ref|YP_007280636.1| - 2.4e-14 53.7 0.5 1.3e-13 51.3 0.0 2.4 3 1 0 3 3 3 1 AAA ATPase domain AAA_22 PF13401.1 gi|433591140|ref|YP_007280636.1| - 5.4e-10 39.5 0.0 1.1e-09 38.4 0.0 1.5 1 0 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|433591140|ref|YP_007280636.1| - 3.9e-05 23.3 0.0 6.5e-05 22.6 0.0 1.4 1 0 0 1 1 1 1 NACHT domain AAA PF00004.24 gi|433591140|ref|YP_007280636.1| - 5.3e-05 23.4 0.0 0.00017 21.7 0.0 1.9 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Arch_ATPase PF01637.13 gi|433591140|ref|YP_007280636.1| - 8.8e-05 22.3 0.0 0.00015 21.5 0.0 1.4 1 0 0 1 1 1 1 Archaeal ATPase DUF815 PF05673.8 gi|433591140|ref|YP_007280636.1| - 0.00022 20.2 0.0 0.00037 19.5 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF815) RNA_helicase PF00910.17 gi|433591140|ref|YP_007280636.1| - 0.0012 19.0 0.0 0.0028 17.7 0.0 1.7 1 1 0 1 1 1 1 RNA helicase AAA_32 PF13654.1 gi|433591140|ref|YP_007280636.1| - 0.0014 17.4 0.3 0.87 8.1 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_24 PF13479.1 gi|433591140|ref|YP_007280636.1| - 0.0015 18.1 0.0 0.0076 15.8 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_5 PF07728.9 gi|433591140|ref|YP_007280636.1| - 0.0029 17.3 0.0 0.017 14.8 0.0 2.4 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) Sigma54_activat PF00158.21 gi|433591140|ref|YP_007280636.1| - 0.0093 15.4 0.0 0.015 14.7 0.0 1.3 1 0 0 1 1 1 1 Sigma-54 interaction domain NB-ARC PF00931.17 gi|433591140|ref|YP_007280636.1| - 0.0099 14.7 0.0 0.05 12.4 0.0 1.9 2 0 0 2 2 2 1 NB-ARC domain Zeta_toxin PF06414.7 gi|433591140|ref|YP_007280636.1| - 0.021 13.9 0.0 0.12 11.4 0.0 2.1 2 0 0 2 2 2 0 Zeta toxin AAA_18 PF13238.1 gi|433591140|ref|YP_007280636.1| - 0.026 14.8 0.0 0.074 13.3 0.0 1.9 1 0 0 1 1 1 0 AAA domain KAP_NTPase PF07693.9 gi|433591140|ref|YP_007280636.1| - 0.031 13.2 0.0 0.2 10.5 0.0 1.7 1 1 0 2 2 2 0 KAP family P-loop domain AAA_17 PF13207.1 gi|433591140|ref|YP_007280636.1| - 0.097 13.4 1.4 0.46 11.3 0.9 2.4 1 1 0 1 1 1 0 AAA domain Histone_HNS PF00816.16 gi|433591141|ref|YP_007280637.1| - 0.25 11.8 2.3 0.55 10.7 1.6 1.6 1 1 0 1 1 1 0 H-NS histone family AAA_23 PF13476.1 gi|433591143|ref|YP_007280639.1| - 3.6e-13 50.3 20.0 3.6e-13 50.3 13.8 4.2 1 1 1 3 3 2 1 AAA domain AAA_13 PF13166.1 gi|433591143|ref|YP_007280639.1| - 6.4e-09 34.8 36.8 4.1e-05 22.2 9.8 2.4 2 0 0 2 2 2 2 AAA domain Reo_sigmaC PF04582.7 gi|433591143|ref|YP_007280639.1| - 0.00035 19.8 31.9 0.11 11.6 4.5 4.5 3 2 2 5 5 5 3 Reovirus sigma C capsid protein Seryl_tRNA_N PF02403.17 gi|433591143|ref|YP_007280639.1| - 0.00078 19.4 5.9 0.00078 19.4 4.1 4.8 2 2 2 4 4 4 1 Seryl-tRNA synthetase N-terminal domain Atg14 PF10186.4 gi|433591143|ref|YP_007280639.1| - 0.003 16.5 21.5 0.003 16.5 14.9 4.1 2 2 2 4 4 4 1 UV radiation resistance protein and autophagy-related subunit 14 GAS PF13851.1 gi|433591143|ref|YP_007280639.1| - 0.0053 15.9 66.2 0.28 10.3 5.2 4.2 2 2 2 4 4 4 3 Growth-arrest specific micro-tubule binding DUF3584 PF12128.3 gi|433591143|ref|YP_007280639.1| - 0.011 13.0 63.9 0.0038 14.6 13.5 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF3584) Tenui_NS3 PF05310.7 gi|433591143|ref|YP_007280639.1| - 0.039 13.8 0.0 0.076 12.9 0.0 1.4 1 0 0 1 1 1 0 Tenuivirus movement protein Baculo_PEP_C PF04513.7 gi|433591143|ref|YP_007280639.1| - 0.07 12.9 35.8 0.023 14.4 4.6 4.6 2 2 2 4 4 4 0 Baculovirus polyhedron envelope protein, PEP, C terminus Myosin_tail_1 PF01576.14 gi|433591143|ref|YP_007280639.1| - 0.073 10.7 78.6 0.031 12.0 26.7 2.4 2 1 0 2 2 2 0 Myosin tail NPV_P10 PF05531.7 gi|433591143|ref|YP_007280639.1| - 0.49 10.6 35.9 11 6.3 1.3 6.6 2 2 3 5 5 5 0 Nucleopolyhedrovirus P10 protein SMC_N PF02463.14 gi|433591143|ref|YP_007280639.1| - 0.52 9.5 0.0 0.52 9.5 0.0 3.0 2 1 0 2 2 1 0 RecF/RecN/SMC N terminal domain DUF4559 PF15112.1 gi|433591143|ref|YP_007280639.1| - 0.7 9.0 43.7 0.15 11.1 11.2 3.5 2 1 1 3 3 3 0 Domain of unknown function (DUF4559) IncA PF04156.9 gi|433591143|ref|YP_007280639.1| - 1 8.9 92.6 1e+04 -4.2 35.5 4.7 1 1 1 2 2 0 0 IncA protein Spectrin PF00435.16 gi|433591143|ref|YP_007280639.1| - 1.1 9.5 57.3 25 5.1 0.0 5.8 3 2 2 5 5 5 0 Spectrin repeat Sec8_exocyst PF04048.9 gi|433591143|ref|YP_007280639.1| - 1.1 8.8 30.3 0.26 10.9 2.6 4.0 2 2 1 3 3 3 0 Sec8 exocyst complex component specific domain CENP-F_leu_zip PF10473.4 gi|433591143|ref|YP_007280639.1| - 1.6 8.5 83.7 0.84 9.4 20.4 4.8 2 2 2 4 4 4 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF3450 PF11932.3 gi|433591143|ref|YP_007280639.1| - 2.2 7.5 60.8 0.3 10.3 4.7 4.6 2 2 2 4 4 4 0 Protein of unknown function (DUF3450) WEMBL PF05701.6 gi|433591143|ref|YP_007280639.1| - 3.1 6.1 62.1 0.016 13.7 14.2 2.5 2 1 0 2 2 2 0 Weak chloroplast movement under blue light HrpA_pilin PF09589.5 gi|433591143|ref|YP_007280639.1| - 4.3 7.7 10.4 63 4.0 0.9 4.1 1 1 1 2 2 2 0 HrpA pilus formation protein Spc7 PF08317.6 gi|433591143|ref|YP_007280639.1| - 9.7 4.7 65.8 0.32 9.5 13.1 4.1 1 1 2 4 4 4 0 Spc7 kinetochore protein TrkA_N PF02254.13 gi|433591144|ref|YP_007280640.1| - 8.3e-25 87.0 1.2 8.3e-25 87.0 0.8 1.6 2 0 0 2 2 2 1 TrkA-N domain TrkA_C PF02080.16 gi|433591144|ref|YP_007280640.1| - 1.2e-14 53.6 0.2 2.6e-14 52.5 0.2 1.6 1 0 0 1 1 1 1 TrkA-C domain NAD_binding_10 PF13460.1 gi|433591144|ref|YP_007280640.1| - 4.4e-07 30.0 0.1 7e-07 29.4 0.1 1.4 1 0 0 1 1 1 1 NADH(P)-binding NAD_binding_7 PF13241.1 gi|433591144|ref|YP_007280640.1| - 1.3e-05 25.4 0.1 2.2e-05 24.6 0.1 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding XdhC_C PF13478.1 gi|433591144|ref|YP_007280640.1| - 0.00018 21.7 0.2 0.00036 20.8 0.1 1.6 1 1 1 2 2 2 1 XdhC Rossmann domain F420_oxidored PF03807.12 gi|433591144|ref|YP_007280640.1| - 0.00029 21.2 0.2 0.00084 19.7 0.1 1.9 2 1 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NmrA PF05368.8 gi|433591144|ref|YP_007280640.1| - 0.00058 19.1 0.1 0.00088 18.5 0.1 1.4 1 0 0 1 1 1 1 NmrA-like family Saccharop_dh PF03435.13 gi|433591144|ref|YP_007280640.1| - 0.0023 17.0 0.1 0.0028 16.7 0.1 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase AlaDh_PNT_C PF01262.16 gi|433591144|ref|YP_007280640.1| - 0.0049 16.4 0.1 0.01 15.4 0.0 1.5 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain Shikimate_DH PF01488.15 gi|433591144|ref|YP_007280640.1| - 0.0067 16.5 0.1 0.0098 15.9 0.1 1.3 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase DAO PF01266.19 gi|433591144|ref|YP_007280640.1| - 0.0087 14.9 0.0 0.012 14.5 0.0 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase DapB_N PF01113.15 gi|433591144|ref|YP_007280640.1| - 0.009 15.9 0.1 0.016 15.1 0.1 1.5 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus 2-Hacid_dh_C PF02826.14 gi|433591144|ref|YP_007280640.1| - 0.01 14.9 0.0 0.016 14.3 0.0 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 3HCDH_N PF02737.13 gi|433591144|ref|YP_007280640.1| - 0.015 14.9 0.1 0.026 14.1 0.1 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox PF00070.22 gi|433591144|ref|YP_007280640.1| - 0.087 13.2 0.0 0.31 11.4 0.0 1.9 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Epimerase PF01370.16 gi|433591144|ref|YP_007280640.1| - 0.093 12.1 0.2 0.15 11.4 0.0 1.5 2 0 0 2 2 2 0 NAD dependent epimerase/dehydratase family GFO_IDH_MocA PF01408.17 gi|433591144|ref|YP_007280640.1| - 0.13 12.8 0.0 0.21 12.1 0.0 1.4 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold Potass_KdpF PF09604.5 gi|433591145|ref|YP_007280641.1| - 3.8e-05 23.3 0.3 4.2e-05 23.2 0.2 1.1 1 0 0 1 1 1 1 F subunit of K+-transporting ATPase (Potass_KdpF) KdpA PF03814.10 gi|433591146|ref|YP_007280642.1| - 2.9e-221 735.2 26.8 3.3e-221 735.1 18.6 1.0 1 0 0 1 1 1 1 Potassium-transporting ATPase A subunit ESSS PF10183.4 gi|433591146|ref|YP_007280642.1| - 0.01 16.1 0.0 4.5 7.7 0.0 2.9 2 0 0 2 2 2 0 ESSS subunit of NADH:ubiquinone oxidoreductase (complex I) Ni_hydr_CYTB PF01292.15 gi|433591146|ref|YP_007280642.1| - 1.8 7.8 19.7 0.23 10.8 3.4 3.8 2 2 1 3 3 3 0 Prokaryotic cytochrome b561 E1-E2_ATPase PF00122.15 gi|433591147|ref|YP_007280643.1| - 1.2e-32 112.8 2.2 1.2e-32 112.8 1.5 2.0 2 0 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.21 gi|433591147|ref|YP_007280643.1| - 5.5e-30 105.3 5.0 1.9e-29 103.6 3.5 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|433591147|ref|YP_007280643.1| - 5.1e-14 52.8 0.0 1.4e-13 51.4 0.0 1.8 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|433591147|ref|YP_007280643.1| - 2.7e-06 27.1 1.7 0.016 14.8 0.7 2.2 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase KdpC PF02669.10 gi|433591148|ref|YP_007280644.1| - 4.5e-36 124.3 0.0 5.5e-36 124.0 0.0 1.1 1 0 0 1 1 1 1 K+-transporting ATPase, c chain Usp PF00582.21 gi|433591149|ref|YP_007280645.1| - 9e-20 71.2 0.1 6.4e-11 42.6 0.0 2.6 2 1 0 2 2 2 2 Universal stress protein family BaxI_1 PF12811.2 gi|433591150|ref|YP_007280646.1| - 0.037 13.1 1.5 0.05 12.7 1.0 1.3 1 0 0 1 1 1 0 Bax inhibitor 1 like DUF2453 PF10507.4 gi|433591150|ref|YP_007280646.1| - 0.058 13.2 2.1 0.062 13.1 0.7 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2453) Asp-Al_Ex PF06826.7 gi|433591150|ref|YP_007280646.1| - 0.12 11.8 9.9 0.048 13.1 2.5 2.1 1 1 1 2 2 2 0 Predicted Permease Membrane Region Tmemb_14 PF03647.8 gi|433591150|ref|YP_007280646.1| - 0.28 11.6 5.4 5.9 7.3 0.5 2.2 2 0 0 2 2 2 0 Transmembrane proteins 14C SPW PF03779.9 gi|433591150|ref|YP_007280646.1| - 8.9 5.7 7.5 0.46 9.8 0.7 2.4 2 1 0 2 2 2 0 SPW repeat MerC PF03203.9 gi|433591151|ref|YP_007280647.1| - 0.15 12.4 12.1 0.21 11.9 8.4 1.3 1 1 0 1 1 1 0 MerC mercury resistance protein CitMHS PF03600.11 gi|433591151|ref|YP_007280647.1| - 0.56 8.7 9.3 0.73 8.3 6.4 1.1 1 0 0 1 1 1 0 Citrate transporter TctB PF07331.6 gi|433591151|ref|YP_007280647.1| - 6.2 6.4 16.8 20 4.8 11.7 1.8 1 1 0 1 1 1 0 Tripartite tricarboxylate transporter TctB family HTH_AsnC-type PF13404.1 gi|433591152|ref|YP_007280648.1| - 7.7e-08 31.7 0.5 1.2e-07 31.1 0.3 1.3 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.1 gi|433591152|ref|YP_007280648.1| - 6.5e-06 25.4 0.0 9.7e-06 24.8 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|433591152|ref|YP_007280648.1| - 6.7e-06 25.8 0.0 9.9e-06 25.2 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.1 gi|433591152|ref|YP_007280648.1| - 0.00081 19.6 0.0 0.0011 19.2 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_11 PF08279.7 gi|433591152|ref|YP_007280648.1| - 0.0019 17.7 0.0 0.0029 17.2 0.0 1.2 1 0 0 1 1 1 1 HTH domain HTH_38 PF13936.1 gi|433591152|ref|YP_007280648.1| - 0.003 17.0 0.0 0.0047 16.4 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|433591152|ref|YP_007280648.1| - 0.0041 16.7 0.0 0.0071 16.0 0.0 1.3 1 0 0 1 1 1 1 MarR family HrcA_DNA-bdg PF03444.10 gi|433591152|ref|YP_007280648.1| - 0.014 14.8 0.0 0.021 14.2 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Rrf2 PF02082.15 gi|433591152|ref|YP_007280648.1| - 0.024 14.7 0.0 0.038 14.1 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator HTH_DeoR PF08220.7 gi|433591152|ref|YP_007280648.1| - 0.028 13.9 0.1 0.042 13.3 0.0 1.2 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain TrmB PF01978.14 gi|433591152|ref|YP_007280648.1| - 0.061 13.0 0.0 0.079 12.6 0.0 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_Tnp_Tc3_2 PF01498.13 gi|433591152|ref|YP_007280648.1| - 0.12 12.4 0.1 0.19 11.7 0.1 1.3 1 0 0 1 1 1 0 Transposase DHH PF01368.15 gi|433591153|ref|YP_007280649.1| - 2e-16 59.9 0.2 3.4e-16 59.1 0.1 1.3 1 0 0 1 1 1 1 DHH family DHHA1 PF02272.14 gi|433591153|ref|YP_007280649.1| - 2.8e-13 49.3 0.1 5.3e-13 48.4 0.1 1.4 1 0 0 1 1 1 1 DHHA1 domain Usp PF00582.21 gi|433591154|ref|YP_007280650.1| - 1.4e-08 35.0 0.8 3.4e-08 33.7 0.2 1.8 2 0 0 2 2 2 1 Universal stress protein family MFS_1 PF07690.11 gi|433591155|ref|YP_007280651.1| - 6e-36 123.8 37.6 8.2e-36 123.4 26.0 1.1 1 0 0 1 1 1 1 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|433591155|ref|YP_007280651.1| - 1.3e-06 27.3 18.7 1.1e-05 24.2 5.9 2.1 2 0 0 2 2 2 2 Sugar (and other) transporter UNC-93 PF05978.11 gi|433591155|ref|YP_007280651.1| - 0.00014 21.4 1.9 0.00029 20.3 1.3 1.6 1 0 0 1 1 1 1 Ion channel regulatory protein UNC-93 MFS_1_like PF12832.2 gi|433591155|ref|YP_007280651.1| - 0.00019 21.1 1.4 1.6 8.5 0.0 3.5 2 1 1 3 3 3 2 MFS_1 like family DUF2427 PF10348.4 gi|433591155|ref|YP_007280651.1| - 0.16 11.5 0.9 0.86 9.2 0.2 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF2427) GAF_2 PF13185.1 gi|433591156|ref|YP_007280652.1| - 1.7e-22 80.5 6.3 7.3e-12 46.0 0.2 2.7 2 0 0 2 2 2 2 GAF domain PAS_4 PF08448.5 gi|433591156|ref|YP_007280652.1| - 1.9e-17 63.2 2.5 1.1e-11 44.7 0.2 3.3 3 0 0 3 3 3 2 PAS fold GAF_3 PF13492.1 gi|433591156|ref|YP_007280652.1| - 3.2e-17 62.8 0.9 3.4e-11 43.3 0.1 2.7 2 0 0 2 2 2 2 GAF domain HTH_10 PF04967.7 gi|433591156|ref|YP_007280652.1| - 9.3e-17 60.3 0.0 2.3e-16 59.0 0.0 1.8 1 0 0 1 1 1 1 HTH DNA binding domain PAS_9 PF13426.1 gi|433591156|ref|YP_007280652.1| - 2.1e-14 53.7 1.3 6.6e-07 29.6 0.0 3.0 2 0 0 2 2 2 2 PAS domain Response_reg PF00072.19 gi|433591156|ref|YP_007280652.1| - 3.3e-12 46.3 0.3 1e-11 44.8 0.0 2.1 2 0 0 2 2 2 1 Response regulator receiver domain PAS_8 PF13188.1 gi|433591156|ref|YP_007280652.1| - 2.6e-07 30.2 0.4 0.026 14.3 0.0 3.5 3 0 0 3 3 3 2 PAS domain PAS PF00989.19 gi|433591156|ref|YP_007280652.1| - 3.1e-05 23.7 3.5 0.43 10.3 0.0 4.3 4 1 0 4 4 4 2 PAS fold Sigma70_r4 PF04545.11 gi|433591156|ref|YP_007280652.1| - 0.0051 16.0 0.1 0.047 13.0 0.0 2.5 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_22 PF13309.1 gi|433591156|ref|YP_007280652.1| - 0.0097 15.6 0.1 0.056 13.2 0.0 2.4 2 0 0 2 2 2 1 HTH domain PAS_7 PF12860.2 gi|433591156|ref|YP_007280652.1| - 0.021 14.8 2.8 1.1 9.2 0.0 3.6 3 1 0 3 3 3 0 PAS fold TetR_N PF00440.18 gi|433591156|ref|YP_007280652.1| - 0.072 12.7 0.0 0.23 11.1 0.0 1.8 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family zf-C2HC5 PF06221.8 gi|433591157|ref|YP_007280653.1| - 7.3e-05 22.4 0.3 8.9e-05 22.1 0.2 1.1 1 0 0 1 1 1 1 Putative zinc finger motif, C2HC5-type Zn-ribbon_8 PF09723.5 gi|433591157|ref|YP_007280653.1| - 0.0041 17.0 5.4 0.03 14.2 3.3 2.1 1 1 1 2 2 2 1 Zinc ribbon domain DUF1272 PF06906.6 gi|433591157|ref|YP_007280653.1| - 0.0045 16.8 0.6 0.0051 16.6 0.4 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1272) DZR PF12773.2 gi|433591157|ref|YP_007280653.1| - 0.0046 16.7 0.8 0.0054 16.5 0.5 1.2 1 0 0 1 1 1 1 Double zinc ribbon Prok-RING_1 PF14446.1 gi|433591157|ref|YP_007280653.1| - 0.0056 16.3 0.6 0.0068 16.1 0.4 1.1 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 zf-C4_Topoisom PF01396.14 gi|433591157|ref|YP_007280653.1| - 0.013 14.9 1.9 0.069 12.6 0.3 2.0 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger Nudix_N_2 PF14803.1 gi|433591157|ref|YP_007280653.1| - 0.016 14.9 1.3 1.1 8.9 0.1 2.1 2 0 0 2 2 2 0 Nudix N-terminal zf-IS66 PF13005.2 gi|433591157|ref|YP_007280653.1| - 0.016 15.1 0.5 0.016 15.1 0.3 1.9 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 HypA PF01155.14 gi|433591157|ref|YP_007280653.1| - 0.03 13.9 0.4 0.033 13.8 0.3 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family YhfH PF14149.1 gi|433591157|ref|YP_007280653.1| - 0.048 13.4 2.5 3.6 7.4 0.2 2.1 1 1 1 2 2 2 0 YhfH-like protein OrfB_Zn_ribbon PF07282.6 gi|433591157|ref|YP_007280653.1| - 0.098 12.3 0.2 0.12 12.0 0.1 1.2 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Ogr_Delta PF04606.7 gi|433591157|ref|YP_007280653.1| - 0.11 12.2 2.3 0.33 10.6 0.4 2.0 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger RNA_POL_M_15KD PF02150.11 gi|433591157|ref|YP_007280653.1| - 0.14 11.8 1.3 1.1 8.9 0.6 2.2 1 1 2 3 3 3 0 RNA polymerases M/15 Kd subunit zinc_ribbon_2 PF13240.1 gi|433591157|ref|YP_007280653.1| - 0.2 11.1 4.6 0.71 9.4 3.2 1.8 1 1 0 1 1 1 0 zinc-ribbon domain Desulfoferrod_N PF06397.7 gi|433591157|ref|YP_007280653.1| - 0.28 10.6 3.9 0.6 9.5 2.7 1.6 1 1 0 1 1 1 0 Desulfoferrodoxin, N-terminal domain A2L_zn_ribbon PF08792.5 gi|433591157|ref|YP_007280653.1| - 0.29 10.6 2.5 1 8.8 1.7 1.8 1 1 0 1 1 1 0 A2L zinc ribbon domain TFIIS_C PF01096.13 gi|433591157|ref|YP_007280653.1| - 0.31 10.7 2.6 4.3 7.0 0.1 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-AN1 PF01428.11 gi|433591157|ref|YP_007280653.1| - 0.32 10.8 1.9 5.3 7.0 1.8 2.0 1 1 1 2 2 2 0 AN1-like Zinc finger zf-ribbon_3 PF13248.1 gi|433591157|ref|YP_007280653.1| - 0.64 9.3 4.2 11 5.3 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DNA_RNApol_7kD PF03604.8 gi|433591157|ref|YP_007280653.1| - 0.83 9.1 3.0 1.9 7.9 2.1 1.6 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit zf-RING_3 PF14369.1 gi|433591157|ref|YP_007280653.1| - 1.8 8.5 5.2 5.9 6.9 3.0 1.9 1 1 1 2 2 2 0 zinc-finger TF_Zn_Ribbon PF08271.7 gi|433591157|ref|YP_007280653.1| - 2.4 7.5 5.8 2.8 7.3 0.3 2.4 2 1 0 2 2 2 0 TFIIB zinc-binding zf-TFIIB PF13453.1 gi|433591157|ref|YP_007280653.1| - 2.6 7.3 4.9 1.5 8.0 0.6 2.0 2 0 0 2 2 2 0 Transcription factor zinc-finger zf-Mss51 PF13824.1 gi|433591157|ref|YP_007280653.1| - 4.4 7.2 6.2 5.3 6.9 0.6 2.1 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 DUF3797 PF12677.2 gi|433591157|ref|YP_007280653.1| - 5.1 6.7 5.8 7.6 6.2 0.2 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) ELFV_dehydrog PF00208.16 gi|433591158|ref|YP_007280654.1| - 1.7e-71 240.6 1.0 2.4e-71 240.1 0.7 1.2 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.13 gi|433591158|ref|YP_007280654.1| - 4.3e-52 175.1 0.0 6.9e-52 174.4 0.0 1.3 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.14 gi|433591158|ref|YP_007280654.1| - 0.00028 20.1 0.0 0.00047 19.3 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.16 gi|433591158|ref|YP_007280654.1| - 0.037 13.5 1.6 0.18 11.3 1.1 2.0 1 1 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Oxidored_nitro PF00148.14 gi|433591158|ref|YP_007280654.1| - 0.076 11.6 0.0 0.11 11.1 0.0 1.2 1 0 0 1 1 1 0 Nitrogenase component 1 type Oxidoreductase ChaB PF06150.7 gi|433591158|ref|YP_007280654.1| - 0.078 12.7 0.6 0.21 11.4 0.4 1.7 1 0 0 1 1 1 0 ChaB AdoHcyase_NAD PF00670.16 gi|433591158|ref|YP_007280654.1| - 0.079 12.7 0.1 0.17 11.7 0.1 1.5 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain DUF2564 PF10819.3 gi|433591158|ref|YP_007280654.1| - 0.1 12.7 0.1 0.22 11.6 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2564) DUF4257 PF14074.1 gi|433591159|ref|YP_007280655.1| - 0.053 13.1 1.3 0.078 12.6 0.8 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF4257) Choline_transpo PF04515.7 gi|433591159|ref|YP_007280655.1| - 0.11 11.2 4.7 0.12 11.0 3.3 1.0 1 0 0 1 1 1 0 Plasma-membrane choline transporter PAS_3 PF08447.6 gi|433591161|ref|YP_007280657.1| - 5.8e-40 135.2 1.2 3.5e-15 55.8 0.2 3.5 3 0 0 3 3 3 3 PAS fold PAS_9 PF13426.1 gi|433591161|ref|YP_007280657.1| - 3e-32 111.0 4.8 2.7e-09 37.3 0.0 4.9 5 0 0 5 5 5 4 PAS domain HATPase_c PF02518.21 gi|433591161|ref|YP_007280657.1| - 2e-21 75.7 0.0 1.3e-20 73.1 0.0 2.4 3 0 0 3 3 3 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.5 gi|433591161|ref|YP_007280657.1| - 1.3e-18 67.0 16.2 1.4e-05 25.0 0.3 4.4 4 0 0 4 4 4 4 PAS fold PAS PF00989.19 gi|433591161|ref|YP_007280657.1| - 1.8e-18 66.3 0.9 6.3e-06 25.9 0.0 4.6 4 0 0 4 4 4 3 PAS fold Response_reg PF00072.19 gi|433591161|ref|YP_007280657.1| - 1.7e-16 60.1 0.2 3.6e-15 55.9 0.0 3.1 3 0 0 3 3 3 1 Response regulator receiver domain PAS_7 PF12860.2 gi|433591161|ref|YP_007280657.1| - 6.2e-12 45.5 8.6 1.8e-08 34.3 0.1 4.7 4 1 0 4 4 4 2 PAS fold PAS_8 PF13188.1 gi|433591161|ref|YP_007280657.1| - 5.7e-09 35.5 0.2 0.0027 17.5 0.0 4.0 3 0 0 3 3 3 2 PAS domain HATPase_c_5 PF14501.1 gi|433591161|ref|YP_007280657.1| - 4.6e-08 32.6 0.0 1.1e-06 28.3 0.0 2.4 2 0 0 2 2 2 1 GHKL domain HATPase_c_2 PF13581.1 gi|433591161|ref|YP_007280657.1| - 6e-07 29.2 0.3 3.1e-06 26.9 0.0 2.3 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain HisKA PF00512.20 gi|433591161|ref|YP_007280657.1| - 0.00012 21.9 1.1 0.00029 20.7 0.2 2.2 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain HATPase_c_3 PF13589.1 gi|433591161|ref|YP_007280657.1| - 0.11 12.1 0.1 0.37 10.4 0.0 1.9 2 0 0 2 2 2 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IclR PF01614.13 gi|433591162|ref|YP_007280658.1| - 2.4e-33 114.5 0.0 4.4e-33 113.7 0.0 1.4 1 0 0 1 1 1 1 Bacterial transcriptional regulator HTH_IclR PF09339.5 gi|433591162|ref|YP_007280658.1| - 1.2e-15 56.8 0.0 1.2e-14 53.6 0.0 2.4 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_20 PF12840.2 gi|433591162|ref|YP_007280658.1| - 5.2e-08 32.5 0.0 1.4e-07 31.1 0.0 1.8 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|433591162|ref|YP_007280658.1| - 8.8e-08 31.4 0.0 2.2e-07 30.1 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|433591162|ref|YP_007280658.1| - 6.1e-07 29.0 0.0 2.3e-06 27.1 0.0 2.0 2 0 0 2 2 1 1 MarR family HTH_5 PF01022.15 gi|433591162|ref|YP_007280658.1| - 1.1e-06 28.1 0.0 4.9e-06 26.0 0.0 2.2 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|433591162|ref|YP_007280658.1| - 4.6e-06 26.2 0.4 1.1e-05 25.0 0.0 1.8 2 0 0 2 2 1 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.1 gi|433591162|ref|YP_007280658.1| - 0.00013 22.2 0.8 0.03 14.6 0.0 3.2 3 0 0 3 3 3 1 Winged helix DNA-binding domain MarR PF01047.17 gi|433591162|ref|YP_007280658.1| - 0.00017 21.2 0.0 0.00039 20.0 0.0 1.6 1 0 0 1 1 1 1 MarR family DUF742 PF05331.6 gi|433591162|ref|YP_007280658.1| - 0.00023 20.7 0.0 0.00042 19.8 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF742) HTH_11 PF08279.7 gi|433591162|ref|YP_007280658.1| - 0.0003 20.3 0.0 0.0011 18.6 0.0 1.9 2 0 0 2 2 2 1 HTH domain HTH_23 PF13384.1 gi|433591162|ref|YP_007280658.1| - 0.00034 20.1 0.3 0.0069 16.0 0.0 2.8 3 0 0 3 3 3 1 Homeodomain-like domain HTH_45 PF14947.1 gi|433591162|ref|YP_007280658.1| - 0.00057 19.6 0.0 0.0012 18.5 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_36 PF13730.1 gi|433591162|ref|YP_007280658.1| - 0.0021 18.1 0.0 0.008 16.2 0.0 1.9 1 1 1 2 2 2 1 Helix-turn-helix domain Fe_dep_repress PF01325.14 gi|433591162|ref|YP_007280658.1| - 0.0036 17.1 0.0 0.016 15.1 0.0 2.1 3 0 0 3 3 2 1 Iron dependent repressor, N-terminal DNA binding domain Rrf2 PF02082.15 gi|433591162|ref|YP_007280658.1| - 0.006 16.6 0.0 0.029 14.4 0.0 2.1 2 1 0 2 2 2 1 Transcriptional regulator RPA_C PF08784.6 gi|433591162|ref|YP_007280658.1| - 0.0071 16.7 0.0 0.023 15.1 0.0 1.9 2 1 0 2 2 1 1 Replication protein A C terminal HTH_40 PF14493.1 gi|433591162|ref|YP_007280658.1| - 0.014 15.5 0.0 0.059 13.5 0.0 2.1 2 1 0 2 2 2 0 Helix-turn-helix domain Terminase_5 PF06056.7 gi|433591162|ref|YP_007280658.1| - 0.018 14.5 0.0 0.068 12.7 0.0 2.0 2 0 0 2 2 2 0 Putative ATPase subunit of terminase (gpP-like) HTH_28 PF13518.1 gi|433591162|ref|YP_007280658.1| - 0.027 14.4 0.0 0.066 13.2 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|433591162|ref|YP_007280658.1| - 0.03 13.7 0.0 0.39 10.2 0.0 2.6 2 0 0 2 2 2 0 Sigma-70, region 4 FeoC PF09012.5 gi|433591162|ref|YP_007280658.1| - 0.034 13.8 0.0 0.089 12.5 0.0 1.7 1 0 0 1 1 1 0 FeoC like transcriptional regulator DUF1803 PF08820.5 gi|433591162|ref|YP_007280658.1| - 0.036 13.7 0.0 0.062 13.0 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1803) Sigma70_r3 PF04539.11 gi|433591162|ref|YP_007280658.1| - 0.037 13.9 0.0 0.11 12.3 0.0 1.8 1 0 0 1 1 1 0 Sigma-70 region 3 HTH_9 PF08221.6 gi|433591162|ref|YP_007280658.1| - 0.048 13.5 0.0 0.095 12.5 0.0 1.4 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain EAP30 PF04157.11 gi|433591162|ref|YP_007280658.1| - 0.081 12.0 0.0 0.17 11.0 0.0 1.5 1 0 0 1 1 1 0 EAP30/Vps36 family AHH PF14412.1 gi|433591162|ref|YP_007280658.1| - 0.11 12.5 0.0 0.24 11.3 0.0 1.7 1 0 0 1 1 1 0 A nuclease family of the HNH/ENDO VII superfamily with conserved AHH DUF2250 PF10007.4 gi|433591162|ref|YP_007280658.1| - 0.12 12.2 0.0 0.53 10.2 0.0 1.9 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) ECH PF00378.15 gi|433591163|ref|YP_007280659.1| - 4.9e-40 137.1 0.0 5.5e-40 137.0 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family DUF1525 PF07511.6 gi|433591163|ref|YP_007280659.1| - 0.055 13.4 0.0 0.1 12.5 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1525) CoA_trans PF01144.18 gi|433591164|ref|YP_007280660.1| - 6.3e-39 133.3 11.2 2.1e-36 125.1 0.6 3.4 3 1 0 3 3 3 2 Coenzyme A transferase AcetylCoA_hydro PF02550.10 gi|433591164|ref|YP_007280660.1| - 0.0019 18.0 0.0 1.2 8.8 0.0 2.6 3 0 0 3 3 3 2 Acetyl-CoA hydrolase/transferase N-terminal domain Acyl-CoA_dh_1 PF00441.19 gi|433591165|ref|YP_007280661.1| - 4.6e-53 179.3 1.6 6.6e-53 178.8 1.1 1.2 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|433591165|ref|YP_007280661.1| - 4.4e-33 114.2 0.0 9.5e-33 113.1 0.0 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.6 gi|433591165|ref|YP_007280661.1| - 4e-24 85.3 4.5 4e-24 85.3 3.1 1.7 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.14 gi|433591165|ref|YP_007280661.1| - 4.9e-20 70.7 0.0 1.1e-19 69.6 0.0 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain HpaB_N PF11794.3 gi|433591165|ref|YP_007280661.1| - 0.0024 17.3 0.5 0.03 13.6 0.0 2.6 2 1 0 2 2 2 1 4-hydroxyphenylacetate 3-hydroxylase N terminal DUF350 PF03994.9 gi|433591165|ref|YP_007280661.1| - 0.084 12.6 0.0 0.31 10.7 0.0 1.9 1 0 0 1 1 1 0 Domain of Unknown Function (DUF350) HTH_29 PF13551.1 gi|433591166|ref|YP_007280662.1| - 3.2e-14 53.0 0.0 2.5e-13 50.1 0.0 2.4 2 1 1 3 3 3 1 Winged helix-turn helix DDE_3 PF13358.1 gi|433591166|ref|YP_007280662.1| - 1.6e-12 47.4 0.1 3.7e-12 46.2 0.0 1.6 2 0 0 2 2 2 1 DDE superfamily endonuclease HTH_32 PF13565.1 gi|433591166|ref|YP_007280662.1| - 1.9e-11 44.6 0.6 2.7e-10 40.8 0.0 2.6 2 0 0 2 2 2 1 Homeodomain-like domain HTH_23 PF13384.1 gi|433591166|ref|YP_007280662.1| - 9.7e-09 34.6 0.0 3.5e-08 32.8 0.0 2.0 2 0 0 2 2 2 1 Homeodomain-like domain HTH_33 PF13592.1 gi|433591166|ref|YP_007280662.1| - 2.9e-08 33.1 0.0 8.3e-07 28.4 0.0 2.4 2 0 0 2 2 2 1 Winged helix-turn helix HTH_28 PF13518.1 gi|433591166|ref|YP_007280662.1| - 6.6e-06 26.0 0.0 1.7e-05 24.7 0.0 1.7 2 0 0 2 2 1 1 Helix-turn-helix domain rve PF00665.21 gi|433591166|ref|YP_007280662.1| - 6.8e-05 22.9 0.0 0.00013 22.0 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain DDE_1 PF03184.14 gi|433591166|ref|YP_007280662.1| - 0.0006 19.0 0.0 0.00098 18.3 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_7 PF02796.10 gi|433591166|ref|YP_007280662.1| - 0.0015 18.3 0.1 0.0034 17.2 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase Sigma70_r4 PF04545.11 gi|433591166|ref|YP_007280662.1| - 0.0035 16.6 0.0 0.011 14.9 0.0 1.9 1 0 0 1 1 1 1 Sigma-70, region 4 DUF746 PF05344.6 gi|433591166|ref|YP_007280662.1| - 0.0099 15.3 0.0 0.029 13.8 0.0 1.8 1 0 0 1 1 1 1 Domain of Unknown Function (DUF746) LZ_Tnp_IS481 PF13011.1 gi|433591166|ref|YP_007280662.1| - 0.041 14.2 0.0 0.09 13.1 0.0 1.5 1 0 0 1 1 1 0 leucine-zipper of insertion element IS481 Sigma70_r4_2 PF08281.7 gi|433591166|ref|YP_007280662.1| - 0.048 13.1 0.1 0.17 11.3 0.0 1.9 2 0 0 2 2 2 0 Sigma-70, region 4 3HCDH_N PF02737.13 gi|433591167|ref|YP_007280663.1| - 1.2e-63 214.0 0.6 1.5e-63 213.7 0.4 1.1 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 3HCDH PF00725.17 gi|433591167|ref|YP_007280663.1| - 3.4e-35 120.3 0.5 1e-32 112.3 0.0 2.6 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NAD_binding_2 PF03446.10 gi|433591167|ref|YP_007280663.1| - 0.00012 22.0 1.6 0.00028 20.7 1.1 1.7 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase adh_short_C2 PF13561.1 gi|433591167|ref|YP_007280663.1| - 0.0005 19.8 0.1 0.00076 19.3 0.1 1.3 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase F420_oxidored PF03807.12 gi|433591167|ref|YP_007280663.1| - 0.0026 18.1 1.3 0.016 15.6 0.7 2.4 2 1 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_Gly3P_dh_N PF01210.18 gi|433591167|ref|YP_007280663.1| - 0.003 17.3 0.2 0.0064 16.2 0.1 1.6 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 2-Hacid_dh_C PF02826.14 gi|433591167|ref|YP_007280663.1| - 0.011 14.8 0.6 0.021 13.9 0.3 1.4 1 1 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.9 gi|433591167|ref|YP_007280663.1| - 0.045 13.1 0.6 0.089 12.1 0.4 1.5 1 1 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DAO PF01266.19 gi|433591167|ref|YP_007280663.1| - 0.067 12.0 1.0 0.12 11.2 0.7 1.4 1 0 0 1 1 1 0 FAD dependent oxidoreductase NAD_binding_7 PF13241.1 gi|433591167|ref|YP_007280663.1| - 0.22 11.7 1.9 0.45 10.8 0.8 1.7 1 1 1 2 2 2 0 Putative NAD(P)-binding NAD_binding_3 PF03447.11 gi|433591167|ref|YP_007280663.1| - 0.24 11.8 2.0 0.6 10.5 1.4 1.7 1 1 0 1 1 1 0 Homoserine dehydrogenase, NAD binding domain Thiolase_N PF00108.18 gi|433591168|ref|YP_007280664.1| - 1.8e-16 59.9 0.4 5.1e-15 55.1 0.0 2.4 3 0 0 3 3 3 1 Thiolase, N-terminal domain ketoacyl-synt PF00109.21 gi|433591168|ref|YP_007280664.1| - 4.8e-10 39.3 2.2 4.8e-10 39.3 1.5 3.0 3 1 1 4 4 4 1 Beta-ketoacyl synthase, N-terminal domain Thiolase_C PF02803.13 gi|433591168|ref|YP_007280664.1| - 1.1e-08 34.4 0.3 4e-08 32.7 0.2 2.0 1 0 0 1 1 1 1 Thiolase, C-terminal domain Ketoacyl-synt_C PF02801.17 gi|433591168|ref|YP_007280664.1| - 0.00045 20.0 2.3 0.11 12.3 1.8 3.6 2 1 0 2 2 2 1 Beta-ketoacyl synthase, C-terminal domain DUF35 PF01796.12 gi|433591169|ref|YP_007280665.1| - 1.8e-12 47.2 3.8 2.5e-12 46.8 2.6 1.2 1 0 0 1 1 1 1 DUF35 OB-fold domain DUF35_N PF12172.3 gi|433591169|ref|YP_007280665.1| - 2.4e-05 24.1 2.2 3.7e-05 23.4 1.5 1.3 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) TF_Zn_Ribbon PF08271.7 gi|433591169|ref|YP_007280665.1| - 0.08 12.2 0.0 0.21 10.9 0.0 1.7 1 0 0 1 1 1 0 TFIIB zinc-binding zf-TFIIB PF13453.1 gi|433591169|ref|YP_007280665.1| - 0.11 11.6 0.1 0.93 8.7 0.1 2.1 2 0 0 2 2 2 0 Transcription factor zinc-finger AMP-binding PF00501.23 gi|433591170|ref|YP_007280666.1| - 1.4e-80 270.7 0.0 1.7e-80 270.4 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|433591170|ref|YP_007280666.1| - 1.5e-19 70.6 0.2 3.9e-19 69.3 0.1 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain MM_CoA_mutase PF01642.17 gi|433591171|ref|YP_007280667.1| - 2.1e-188 626.6 0.1 2.4e-188 626.4 0.1 1.0 1 0 0 1 1 1 1 Methylmalonyl-CoA mutase B12-binding PF02310.14 gi|433591172|ref|YP_007280668.1| - 1.5e-20 73.2 0.7 1.7e-20 73.0 0.5 1.0 1 0 0 1 1 1 1 B12 binding domain Staph_haemo PF05480.6 gi|433591172|ref|YP_007280668.1| - 0.077 12.6 0.0 0.21 11.3 0.0 1.7 1 0 0 1 1 1 0 Staphylococcus haemolytic protein Peptidase_S8 PF00082.17 gi|433591174|ref|YP_007280670.1| - 3.5e-41 141.2 0.7 4.9e-41 140.7 0.5 1.2 1 0 0 1 1 1 1 Subtilase family PMSR PF01625.16 gi|433591175|ref|YP_007280671.1| - 4.9e-37 127.1 0.2 6.4e-37 126.8 0.1 1.1 1 0 0 1 1 1 1 Peptide methionine sulfoxide reductase DUF1810 PF08837.6 gi|433591176|ref|YP_007280672.1| - 2.4e-62 208.6 0.0 2.7e-62 208.4 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1810) NTP_transf_2 PF01909.18 gi|433591177|ref|YP_007280673.1| - 1.4e-10 41.3 0.2 2.3e-10 40.6 0.1 1.5 1 0 0 1 1 1 1 Nucleotidyltransferase domain MarR_2 PF12802.2 gi|433591177|ref|YP_007280673.1| - 0.00027 20.5 0.1 0.0015 18.1 0.0 2.1 2 0 0 2 2 2 1 MarR family HTH_36 PF13730.1 gi|433591177|ref|YP_007280673.1| - 0.01 15.9 0.0 0.12 12.5 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_IclR PF09339.5 gi|433591177|ref|YP_007280673.1| - 0.026 14.1 0.0 0.048 13.2 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain RP-C PF03428.8 gi|433591177|ref|YP_007280673.1| - 0.057 12.8 0.1 0.12 11.8 0.1 1.5 1 0 0 1 1 1 0 Replication protein C N-terminal domain HTH_27 PF13463.1 gi|433591177|ref|YP_007280673.1| - 0.12 12.7 0.0 0.3 11.4 0.0 1.7 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF294 PF03445.8 gi|433591177|ref|YP_007280673.1| - 0.13 11.8 0.0 0.2 11.2 0.0 1.3 1 0 0 1 1 1 0 Putative nucleotidyltransferase DUF294 DUF1628 PF07790.6 gi|433591180|ref|YP_007280676.1| - 5.3e-14 52.7 10.1 1.8e-13 51.0 7.0 2.0 1 1 0 1 1 1 1 Protein of unknown function (DUF1628) FHIPEP PF00771.15 gi|433591180|ref|YP_007280676.1| - 0.033 12.5 0.0 0.036 12.4 0.0 1.0 1 0 0 1 1 1 0 FHIPEP family Glyco_hydro_2 PF00703.16 gi|433591180|ref|YP_007280676.1| - 0.83 10.1 4.4 1.3 9.4 1.1 2.2 1 1 1 2 2 2 0 Glycosyl hydrolases family 2 DDE_Tnp_IS66 PF03050.9 gi|433591181|ref|YP_007280677.1| - 8.1e-53 179.3 0.1 8.1e-53 179.3 0.1 1.6 2 0 0 2 2 2 1 Transposase IS66 family bZIP_1 PF00170.16 gi|433591181|ref|YP_007280677.1| - 0.00075 19.4 5.9 0.0016 18.3 4.1 1.6 1 0 0 1 1 1 1 bZIP transcription factor DASH_Spc34 PF08657.5 gi|433591181|ref|YP_007280677.1| - 0.0029 17.2 3.5 0.014 15.0 3.0 1.6 2 0 0 2 2 2 1 DASH complex subunit Spc34 GAS PF13851.1 gi|433591181|ref|YP_007280677.1| - 0.0039 16.4 4.5 0.0075 15.4 3.1 1.4 1 0 0 1 1 1 1 Growth-arrest specific micro-tubule binding Shugoshin_N PF07558.6 gi|433591181|ref|YP_007280677.1| - 0.0078 15.9 2.6 0.016 14.8 1.8 1.5 1 0 0 1 1 1 1 Shugoshin N-terminal coiled-coil region Tropomyosin_1 PF12718.2 gi|433591181|ref|YP_007280677.1| - 0.009 15.8 5.1 0.019 14.7 3.6 1.5 1 0 0 1 1 1 1 Tropomyosin like MCC-bdg_PDZ PF10506.4 gi|433591181|ref|YP_007280677.1| - 0.0093 15.7 4.7 0.023 14.4 3.3 1.7 1 0 0 1 1 1 1 PDZ domain of MCC-2 bdg protein for Usher syndrome Transposase_mut PF00872.13 gi|433591181|ref|YP_007280677.1| - 0.0096 14.5 0.1 0.017 13.6 0.0 1.3 1 0 0 1 1 1 1 Transposase, Mutator family DUF2681 PF10883.3 gi|433591181|ref|YP_007280677.1| - 0.017 15.3 1.3 0.055 13.6 0.6 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2681) IncA PF04156.9 gi|433591181|ref|YP_007280677.1| - 0.017 14.6 5.4 0.048 13.2 3.8 1.7 1 0 0 1 1 1 0 IncA protein TMF_TATA_bd PF12325.3 gi|433591181|ref|YP_007280677.1| - 0.019 14.6 10.1 0.019 14.6 7.0 1.7 2 0 0 2 2 1 0 TATA element modulatory factor 1 TATA binding CENP-F_leu_zip PF10473.4 gi|433591181|ref|YP_007280677.1| - 0.036 13.9 8.3 0.091 12.6 5.8 1.6 1 0 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Spc24 PF08286.6 gi|433591181|ref|YP_007280677.1| - 0.057 13.1 3.0 0.12 12.0 2.1 1.5 1 0 0 1 1 1 0 Spc24 subunit of Ndc80 TBPIP PF07106.8 gi|433591181|ref|YP_007280677.1| - 0.075 12.5 2.7 0.18 11.3 1.9 1.6 1 0 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Med4 PF10018.4 gi|433591181|ref|YP_007280677.1| - 0.078 12.3 4.6 0.12 11.7 2.7 1.6 2 0 0 2 2 1 0 Vitamin-D-receptor interacting Mediator subunit 4 DUF972 PF06156.8 gi|433591181|ref|YP_007280677.1| - 0.08 13.2 2.3 0.21 11.9 1.6 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF972) CBF_beta PF02312.12 gi|433591181|ref|YP_007280677.1| - 0.087 12.4 2.1 0.16 11.5 1.5 1.3 1 0 0 1 1 1 0 Core binding factor beta subunit Daxx PF03344.10 gi|433591181|ref|YP_007280677.1| - 0.17 10.3 7.7 0.24 9.8 5.3 1.1 1 0 0 1 1 1 0 Daxx Family bZIP_2 PF07716.10 gi|433591181|ref|YP_007280677.1| - 0.18 11.6 8.5 0.46 10.3 5.7 1.9 1 1 0 1 1 1 0 Basic region leucine zipper DDE_Tnp_IS240 PF13610.1 gi|433591181|ref|YP_007280677.1| - 0.28 11.1 0.1 0.28 11.1 0.1 1.9 2 1 0 2 2 1 0 DDE domain NYD-SP28_assoc PF14775.1 gi|433591181|ref|YP_007280677.1| - 0.29 10.8 5.4 0.92 9.2 3.8 1.9 1 0 0 1 1 1 0 Sperm tail C-terminal domain V_ATPase_I PF01496.14 gi|433591181|ref|YP_007280677.1| - 0.41 8.4 2.1 0.59 7.9 1.4 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family DUF3450 PF11932.3 gi|433591181|ref|YP_007280677.1| - 0.44 9.7 4.2 1.1 8.4 2.9 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3450) CtIP_N PF10482.4 gi|433591181|ref|YP_007280677.1| - 0.55 10.0 9.6 0.14 11.9 4.2 1.8 2 0 0 2 2 1 0 Tumour-suppressor protein CtIP N-terminal domain APG6 PF04111.7 gi|433591181|ref|YP_007280677.1| - 1.1 8.2 3.7 1.9 7.4 2.6 1.3 1 0 0 1 1 1 0 Autophagy protein Apg6 DivIC PF04977.10 gi|433591181|ref|YP_007280677.1| - 2.8 7.5 8.6 0.97 8.9 2.9 2.5 3 0 0 3 3 2 0 Septum formation initiator PHO4 PF01384.15 gi|433591184|ref|YP_007280680.1| - 4.3e-61 206.3 19.7 5.7e-61 205.9 13.6 1.1 1 0 0 1 1 1 1 Phosphate transporter family EamA PF00892.15 gi|433591185|ref|YP_007280681.1| - 6.7e-32 110.1 36.0 2.8e-19 69.4 9.8 2.3 2 1 0 2 2 2 2 EamA-like transporter family UPF0546 PF10639.4 gi|433591185|ref|YP_007280681.1| - 0.00098 18.9 1.8 0.00098 18.9 1.2 2.3 2 0 0 2 2 2 1 Uncharacterised protein family UPF0546 EmrE PF13536.1 gi|433591185|ref|YP_007280681.1| - 0.0027 17.8 6.8 0.0027 17.8 4.7 4.1 2 2 2 4 4 4 3 Multidrug resistance efflux transporter TPT PF03151.11 gi|433591185|ref|YP_007280681.1| - 0.019 14.5 21.4 0.11 12.1 6.2 2.9 2 1 0 2 2 2 0 Triose-phosphate Transporter family NAD_binding_10 PF13460.1 gi|433591186|ref|YP_007280682.1| - 2.5e-22 79.7 2.0 4e-22 79.1 1.4 1.3 1 0 0 1 1 1 1 NADH(P)-binding NmrA PF05368.8 gi|433591186|ref|YP_007280682.1| - 2.4e-19 69.5 0.0 3.3e-19 69.0 0.0 1.2 1 0 0 1 1 1 1 NmrA-like family Epimerase PF01370.16 gi|433591186|ref|YP_007280682.1| - 0.00097 18.6 0.5 0.0042 16.5 0.1 2.1 1 1 0 2 2 2 1 NAD dependent epimerase/dehydratase family adh_short PF00106.20 gi|433591186|ref|YP_007280682.1| - 0.023 14.6 0.6 0.057 13.3 0.4 1.7 1 0 0 1 1 1 0 short chain dehydrogenase Semialdhyde_dh PF01118.19 gi|433591186|ref|YP_007280682.1| - 0.09 13.0 0.2 0.18 12.1 0.1 1.5 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain DapB_N PF01113.15 gi|433591186|ref|YP_007280682.1| - 0.1 12.5 0.9 0.33 10.8 0.4 2.0 1 1 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus Toxin_ToxA PF11584.3 gi|433591186|ref|YP_007280682.1| - 0.15 11.9 0.0 0.4 10.5 0.0 1.8 2 0 0 2 2 2 0 Proteinaceous host-selective toxin ToxA 3Beta_HSD PF01073.14 gi|433591186|ref|YP_007280682.1| - 0.18 10.4 0.3 0.49 9.0 0.2 1.7 1 1 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family NikR_C PF08753.6 gi|433591187|ref|YP_007280683.1| - 1.1e-10 41.2 1.9 1.1e-10 41.2 1.3 1.5 2 0 0 2 2 2 1 NikR C terminal nickel binding domain PSK_trans_fac PF07704.6 gi|433591187|ref|YP_007280683.1| - 0.1 13.3 0.0 0.21 12.2 0.0 1.7 2 0 0 2 2 2 0 Rv0623-like transcription factor DUF3437 PF11919.3 gi|433591187|ref|YP_007280683.1| - 0.13 11.9 0.2 0.38 10.5 0.1 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF3437) NicO PF03824.11 gi|433591188|ref|YP_007280684.1| - 1.9e-06 27.4 11.2 5.6e-06 25.8 7.1 2.1 1 1 0 1 1 1 1 High-affinity nickel-transport protein DUF2910 PF11139.3 gi|433591188|ref|YP_007280684.1| - 0.032 13.3 0.0 0.032 13.3 0.0 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF2910) Fijivirus_P9-2 PF06837.6 gi|433591189|ref|YP_007280685.1| - 0.18 10.9 0.2 0.21 10.7 0.1 1.1 1 0 0 1 1 1 0 Fijivirus P9-2 protein DUF2274 PF10038.4 gi|433591189|ref|YP_007280685.1| - 0.23 11.6 3.0 7.5 6.7 0.2 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF2274) ESX-1_EspG PF14011.1 gi|433591189|ref|YP_007280685.1| - 0.29 10.3 2.0 0.35 10.0 1.4 1.1 1 0 0 1 1 1 0 EspG family DUF2892 PF11127.3 gi|433591190|ref|YP_007280686.1| - 7.2e-14 51.3 5.9 3.5e-13 49.1 4.1 1.8 1 1 0 1 1 1 1 Protein of unknown function (DUF2892) DUF1772 PF08592.6 gi|433591190|ref|YP_007280686.1| - 0.0023 17.6 0.1 0.0028 17.4 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1772) IncA PF04156.9 gi|433591190|ref|YP_007280686.1| - 0.0061 16.1 0.8 0.0064 16.1 0.6 1.1 1 0 0 1 1 1 1 IncA protein DUF4231 PF14015.1 gi|433591190|ref|YP_007280686.1| - 0.097 12.6 0.8 0.21 11.6 0.6 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF4231) UPF0444 PF15475.1 gi|433591190|ref|YP_007280686.1| - 1.1 9.3 6.6 0.5 10.4 2.9 1.6 1 1 1 2 2 2 0 Transmembrane protein C12orf23, UPF0444 FAM70 PF14967.1 gi|433591190|ref|YP_007280686.1| - 8.6 5.4 6.4 35 3.4 4.6 1.7 1 1 1 2 2 2 0 FAM70 protein SOUL PF04832.7 gi|433591191|ref|YP_007280687.1| - 2.5e-50 170.4 0.3 3e-50 170.1 0.2 1.1 1 0 0 1 1 1 1 SOUL heme-binding protein E1-E2_ATPase PF00122.15 gi|433591192|ref|YP_007280688.1| - 2.3e-42 144.6 4.8 2.3e-42 144.6 3.4 1.7 2 0 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.21 gi|433591192|ref|YP_007280688.1| - 1.9e-33 116.7 3.5 1.9e-33 116.7 2.4 1.9 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HMA PF00403.21 gi|433591192|ref|YP_007280688.1| - 1.7e-11 44.0 0.0 5.8e-11 42.3 0.0 2.0 1 0 0 1 1 1 1 Heavy-metal-associated domain HAD PF12710.2 gi|433591192|ref|YP_007280688.1| - 1.9e-11 44.4 0.0 5.4e-11 43.0 0.0 1.8 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|433591192|ref|YP_007280688.1| - 0.0014 18.2 0.3 0.0097 15.5 0.7 1.8 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase ATPase-cat_bd PF12156.3 gi|433591192|ref|YP_007280688.1| - 0.0035 17.8 1.1 0.0084 16.6 0.5 1.9 2 0 0 2 2 2 1 Putative metal-binding domain of cation transport ATPase Hydrolase_6 PF13344.1 gi|433591192|ref|YP_007280688.1| - 0.12 12.2 0.0 0.87 9.5 0.0 2.3 2 0 0 2 2 2 0 Haloacid dehalogenase-like hydrolase Tub_2 PF04525.7 gi|433591194|ref|YP_007280690.1| - 0.0003 20.2 0.0 0.011 15.0 0.0 2.4 2 0 0 2 2 2 2 Tubby C 2 SUKH_6 PF14568.1 gi|433591194|ref|YP_007280690.1| - 0.14 12.6 0.2 0.21 12.0 0.1 1.3 1 0 0 1 1 1 0 SMI1-KNR4 cell-wall DUF423 PF04241.10 gi|433591196|ref|YP_007280692.1| - 0.37 10.7 3.0 0.29 11.0 1.4 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF423) Papilloma_E5 PF03025.9 gi|433591196|ref|YP_007280692.1| - 6.2 6.8 11.4 27 4.8 2.2 2.1 1 1 1 2 2 2 0 Papillomavirus E5 Usp PF00582.21 gi|433591197|ref|YP_007280693.1| - 0.00016 21.8 0.0 0.00023 21.3 0.0 1.2 1 0 0 1 1 1 1 Universal stress protein family DUF21 PF01595.15 gi|433591198|ref|YP_007280694.1| - 7.4e-54 181.8 1.4 1e-53 181.3 1.0 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF21 CorC_HlyC PF03471.12 gi|433591198|ref|YP_007280694.1| - 7.8e-23 80.0 2.0 1.8e-22 78.8 1.4 1.7 1 0 0 1 1 1 1 Transporter associated domain CBS PF00571.23 gi|433591198|ref|YP_007280694.1| - 2.8e-19 68.6 6.8 9.3e-10 38.1 0.3 3.0 3 0 0 3 3 3 2 CBS domain ABC_tran PF00005.22 gi|433591199|ref|YP_007280695.1| - 1e-60 203.9 0.0 4.9e-31 107.8 0.0 2.3 2 0 0 2 2 2 2 ABC transporter oligo_HPY PF08352.7 gi|433591199|ref|YP_007280695.1| - 1e-36 125.0 2.7 1.3e-17 63.8 0.4 2.5 2 0 0 2 2 2 2 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|433591199|ref|YP_007280695.1| - 1.3e-16 61.3 1.9 5.1e-06 26.6 0.1 4.1 2 2 2 4 4 4 4 AAA domain AAA_29 PF13555.1 gi|433591199|ref|YP_007280695.1| - 8.8e-09 34.7 0.9 0.00013 21.3 0.0 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|433591199|ref|YP_007280695.1| - 8.1e-08 32.4 3.0 0.003 17.7 0.1 3.7 2 2 0 2 2 2 2 AAA domain AAA_18 PF13238.1 gi|433591199|ref|YP_007280695.1| - 1.2e-06 28.8 0.1 0.041 14.1 0.0 3.0 3 0 0 3 3 3 2 AAA domain AAA_16 PF13191.1 gi|433591199|ref|YP_007280695.1| - 7.2e-06 26.1 0.0 0.15 11.9 0.0 2.6 2 0 0 2 2 2 2 AAA ATPase domain PRK PF00485.13 gi|433591199|ref|YP_007280695.1| - 4.7e-05 23.0 0.1 0.26 10.8 0.0 2.3 2 0 0 2 2 2 2 Phosphoribulokinase / Uridine kinase family SMC_N PF02463.14 gi|433591199|ref|YP_007280695.1| - 0.00015 21.0 2.5 0.68 9.1 0.0 3.8 3 1 0 3 3 3 1 RecF/RecN/SMC N terminal domain AAA_25 PF13481.1 gi|433591199|ref|YP_007280695.1| - 0.00024 20.5 0.0 0.32 10.3 0.0 2.6 2 0 0 2 2 2 2 AAA domain DUF258 PF03193.11 gi|433591199|ref|YP_007280695.1| - 0.00066 18.8 0.0 1.1 8.3 0.0 2.3 2 0 0 2 2 2 2 Protein of unknown function, DUF258 AAA_17 PF13207.1 gi|433591199|ref|YP_007280695.1| - 0.0007 20.4 0.6 0.33 11.7 0.0 3.0 2 0 0 2 2 2 1 AAA domain AAA_23 PF13476.1 gi|433591199|ref|YP_007280695.1| - 0.001 19.4 0.0 0.16 12.2 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_15 PF13175.1 gi|433591199|ref|YP_007280695.1| - 0.0021 17.2 0.2 6.8 5.6 0.0 3.5 4 0 0 4 4 4 0 AAA ATPase domain AAA_5 PF07728.9 gi|433591199|ref|YP_007280695.1| - 0.0033 17.1 0.6 0.38 10.4 0.0 2.5 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) Sigma54_activat PF00158.21 gi|433591199|ref|YP_007280695.1| - 0.0054 16.2 0.1 2.4 7.5 0.0 2.9 3 0 0 3 3 3 1 Sigma-54 interaction domain ArgK PF03308.11 gi|433591199|ref|YP_007280695.1| - 0.0065 15.2 0.7 0.91 8.2 0.1 2.4 2 0 0 2 2 2 1 ArgK protein RNA_helicase PF00910.17 gi|433591199|ref|YP_007280695.1| - 0.0074 16.4 0.1 4.1 7.6 0.0 2.5 2 0 0 2 2 2 1 RNA helicase AAA_33 PF13671.1 gi|433591199|ref|YP_007280695.1| - 0.0083 16.0 0.1 0.67 9.8 0.0 2.5 2 0 0 2 2 2 1 AAA domain Mg_chelatase PF01078.16 gi|433591199|ref|YP_007280695.1| - 0.018 14.2 0.0 0.64 9.1 0.0 2.7 3 0 0 3 3 3 0 Magnesium chelatase, subunit ChlI FtsK_SpoIIIE PF01580.13 gi|433591199|ref|YP_007280695.1| - 0.026 14.0 0.1 4 6.8 0.0 2.4 2 0 0 2 2 2 0 FtsK/SpoIIIE family Zeta_toxin PF06414.7 gi|433591199|ref|YP_007280695.1| - 0.027 13.5 0.9 0.98 8.4 0.1 2.3 2 0 0 2 2 2 0 Zeta toxin AAA_10 PF12846.2 gi|433591199|ref|YP_007280695.1| - 0.028 13.8 0.0 5.9 6.2 0.0 2.6 3 0 0 3 3 2 0 AAA-like domain KaiC PF06745.8 gi|433591199|ref|YP_007280695.1| - 0.034 13.2 0.4 1.7 7.7 0.0 2.5 2 0 0 2 2 2 0 KaiC IstB_IS21 PF01695.12 gi|433591199|ref|YP_007280695.1| - 0.049 13.0 0.0 6.2 6.1 0.0 2.4 2 0 0 2 2 2 0 IstB-like ATP binding protein MMR_HSR1 PF01926.18 gi|433591199|ref|YP_007280695.1| - 0.05 13.5 0.0 6.6 6.7 0.0 2.5 2 0 0 2 2 2 0 50S ribosome-binding GTPase MobB PF03205.9 gi|433591199|ref|YP_007280695.1| - 0.056 13.1 0.2 5.9 6.5 0.0 2.5 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B T2SE PF00437.15 gi|433591199|ref|YP_007280695.1| - 0.056 12.3 0.1 4 6.2 0.0 2.8 3 0 0 3 3 3 0 Type II/IV secretion system protein Miro PF08477.8 gi|433591199|ref|YP_007280695.1| - 0.13 12.8 0.0 8.8 6.8 0.0 2.4 2 0 0 2 2 2 0 Miro-like protein NB-ARC PF00931.17 gi|433591199|ref|YP_007280695.1| - 0.13 11.0 0.5 2.8 6.7 0.0 2.1 2 0 0 2 2 2 0 NB-ARC domain NACHT PF05729.7 gi|433591199|ref|YP_007280695.1| - 0.15 11.6 1.7 7.5 6.1 0.0 2.4 2 0 0 2 2 2 0 NACHT domain NTPase_1 PF03266.10 gi|433591199|ref|YP_007280695.1| - 0.15 11.7 0.7 7.3 6.2 0.0 2.6 2 0 0 2 2 2 0 NTPase APS_kinase PF01583.15 gi|433591199|ref|YP_007280695.1| - 0.17 11.5 0.6 2.7 7.6 0.1 2.3 2 0 0 2 2 2 0 Adenylylsulphate kinase CoaE PF01121.15 gi|433591199|ref|YP_007280695.1| - 0.23 10.8 0.7 9.3 5.6 0.1 2.3 2 0 0 2 2 2 0 Dephospho-CoA kinase BPD_transp_1 PF00528.17 gi|433591200|ref|YP_007280696.1| - 5.2e-21 75.0 13.4 5.2e-21 75.0 9.3 1.7 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|433591200|ref|YP_007280696.1| - 3.7e-07 29.4 0.6 2.3e-06 26.8 0.0 2.4 2 0 0 2 2 2 1 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.17 gi|433591201|ref|YP_007280697.1| - 1.6e-33 115.7 9.8 1.6e-33 115.7 6.8 2.2 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_5 PF00496.17 gi|433591203|ref|YP_007280699.1| - 3.4e-49 167.6 0.3 4.4e-47 160.7 0.2 2.1 2 0 0 2 2 2 2 Bacterial extracellular solute-binding proteins, family 5 Middle HTH_10 PF04967.7 gi|433591204|ref|YP_007280700.1| - 6e-20 70.5 0.1 9.6e-20 69.9 0.1 1.3 1 0 0 1 1 1 1 HTH DNA binding domain HTH_20 PF12840.2 gi|433591204|ref|YP_007280700.1| - 0.0017 18.0 0.0 0.0049 16.6 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|433591204|ref|YP_007280700.1| - 0.0025 17.4 0.1 0.0044 16.6 0.1 1.4 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.15 gi|433591204|ref|YP_007280700.1| - 0.0028 17.2 0.0 0.0061 16.1 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Sigma70_r4 PF04545.11 gi|433591204|ref|YP_007280700.1| - 0.009 15.3 0.0 0.022 14.0 0.0 1.7 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_AsnC-type PF13404.1 gi|433591204|ref|YP_007280700.1| - 0.019 14.4 0.2 0.041 13.4 0.1 1.5 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_24 PF13412.1 gi|433591204|ref|YP_007280700.1| - 0.023 14.0 0.0 0.042 13.2 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Fe_dep_repress PF01325.14 gi|433591204|ref|YP_007280700.1| - 0.029 14.2 0.0 0.059 13.3 0.0 1.6 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_1 PF00126.22 gi|433591204|ref|YP_007280700.1| - 0.03 14.0 0.1 0.084 12.6 0.1 1.7 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family Phage_CI_repr PF07022.8 gi|433591204|ref|YP_007280700.1| - 0.075 13.1 0.0 0.17 12.0 0.0 1.5 1 0 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain HTH_IclR PF09339.5 gi|433591204|ref|YP_007280700.1| - 0.11 12.1 0.2 0.22 11.1 0.1 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain Na_sulph_symp PF00939.14 gi|433591205|ref|YP_007280701.1| - 2.8e-38 131.9 34.0 3.4e-38 131.7 23.5 1.0 1 0 0 1 1 1 1 Sodium:sulfate symporter transmembrane region MFS_1 PF07690.11 gi|433591207|ref|YP_007280703.1| - 5.1e-39 133.9 37.2 1.4e-19 70.0 11.4 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|433591207|ref|YP_007280703.1| - 3.1e-07 29.3 20.5 0.00036 19.2 2.7 2.2 1 1 1 2 2 2 2 Sugar (and other) transporter DUF2273 PF10031.4 gi|433591207|ref|YP_007280703.1| - 0.016 14.7 0.7 0.016 14.7 0.5 4.4 4 0 0 4 4 4 0 Small integral membrane protein (DUF2273) Lactamase_B PF00753.22 gi|433591208|ref|YP_007280704.1| - 2.9e-22 79.2 11.2 4.4e-22 78.7 7.8 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Rhodanese PF00581.15 gi|433591208|ref|YP_007280704.1| - 6.9e-17 61.8 0.0 3.8e-16 59.4 0.0 2.0 2 0 0 2 2 2 1 Rhodanese-like domain Lactamase_B_2 PF12706.2 gi|433591208|ref|YP_007280704.1| - 0.0037 16.8 0.4 0.0063 16.0 0.3 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain HTH_10 PF04967.7 gi|433591209|ref|YP_007280705.1| - 7.2e-21 73.5 0.8 1.2e-20 72.8 0.5 1.4 1 0 0 1 1 1 1 HTH DNA binding domain HTH_24 PF13412.1 gi|433591209|ref|YP_007280705.1| - 0.0044 16.3 0.2 0.016 14.5 0.1 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding UPF0122 PF04297.9 gi|433591209|ref|YP_007280705.1| - 0.039 13.9 0.1 0.11 12.5 0.0 1.7 2 0 0 2 2 2 0 Putative helix-turn-helix protein, YlxM / p13 like HTH_IclR PF09339.5 gi|433591209|ref|YP_007280705.1| - 0.08 12.5 0.1 0.16 11.6 0.1 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain Cdc6_C PF09079.6 gi|433591210|ref|YP_007280706.1| - 7.1e-14 51.2 0.0 1.7e-13 50.1 0.0 1.7 1 0 0 1 1 1 1 CDC6, C terminal AAA_16 PF13191.1 gi|433591210|ref|YP_007280706.1| - 9e-10 38.8 0.6 5.9e-09 36.1 0.0 2.5 2 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|433591210|ref|YP_007280706.1| - 9.4e-08 32.2 0.0 4.3e-07 30.1 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA PF00004.24 gi|433591210|ref|YP_007280706.1| - 9.8e-05 22.5 0.2 0.1 12.7 0.0 2.7 3 0 0 3 3 3 2 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|433591210|ref|YP_007280706.1| - 0.002 17.8 0.2 0.012 15.3 0.2 2.2 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) Sigma54_activat PF00158.21 gi|433591210|ref|YP_007280706.1| - 0.0058 16.1 0.0 0.16 11.4 0.0 2.2 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA_2 PF07724.9 gi|433591210|ref|YP_007280706.1| - 0.02 14.8 0.0 0.043 13.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain (Cdc48 subfamily) NACHT PF05729.7 gi|433591210|ref|YP_007280706.1| - 0.07 12.7 0.0 0.14 11.7 0.0 1.4 1 0 0 1 1 1 0 NACHT domain Arch_ATPase PF01637.13 gi|433591210|ref|YP_007280706.1| - 0.088 12.4 0.0 0.17 11.5 0.0 1.5 1 1 0 1 1 1 0 Archaeal ATPase ABC_tran PF00005.22 gi|433591210|ref|YP_007280706.1| - 0.1 12.9 0.0 0.25 11.6 0.0 1.7 1 0 0 1 1 1 0 ABC transporter MitoNEET_N PF10660.4 gi|433591211|ref|YP_007280707.1| - 0.033 14.0 0.1 0.035 13.9 0.0 1.1 1 0 0 1 1 1 0 Iron-containing outer mitochondrial membrane protein N-terminus DsbD_2 PF13386.1 gi|433591214|ref|YP_007280710.1| - 2.2e-46 158.1 14.3 2.7e-46 157.8 9.9 1.1 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region SdpI PF13630.1 gi|433591214|ref|YP_007280710.1| - 0.096 12.4 0.6 0.096 12.4 0.4 3.0 3 0 0 3 3 3 0 SdpI/YhfL protein family Oleosin PF01277.12 gi|433591214|ref|YP_007280710.1| - 6.4 6.3 8.5 1.1 8.8 2.0 2.5 1 1 1 2 2 2 0 Oleosin DDE_Tnp_IS1595 PF12762.2 gi|433591215|ref|YP_007280711.1| - 5.2e-21 75.0 0.0 8.4e-21 74.3 0.0 1.3 1 0 0 1 1 1 1 ISXO2-like transposase domain Zn_Tnp_IS1595 PF12760.2 gi|433591215|ref|YP_007280711.1| - 4.5e-09 35.9 1.0 9.9e-09 34.8 0.7 1.6 1 0 0 1 1 1 1 Transposase zinc-ribbon domain Zn_Tnp_IS1 PF03811.8 gi|433591215|ref|YP_007280711.1| - 0.00026 20.4 6.6 0.00029 20.2 3.5 1.8 2 0 0 2 2 2 1 InsA N-terminal domain zf-Dof PF02701.10 gi|433591215|ref|YP_007280711.1| - 0.062 13.2 4.3 0.13 12.2 3.0 1.5 1 0 0 1 1 1 0 Dof domain, zinc finger DUF2387 PF09526.5 gi|433591215|ref|YP_007280711.1| - 0.097 12.5 0.1 0.19 11.6 0.1 1.4 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) Zn-ribbon_8 PF09723.5 gi|433591215|ref|YP_007280711.1| - 0.12 12.2 1.3 7.6 6.5 0.0 2.5 2 0 0 2 2 2 0 Zinc ribbon domain zf-ISL3 PF14690.1 gi|433591215|ref|YP_007280711.1| - 0.32 11.0 7.0 1.9 8.6 0.3 2.7 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-C2H2_6 PF13912.1 gi|433591215|ref|YP_007280711.1| - 1.4 8.9 4.6 1.1 9.2 0.2 2.5 2 0 0 2 2 2 0 C2H2-type zinc finger TrmB PF01978.14 gi|433591216|ref|YP_007280712.1| - 8.1e-20 70.3 0.3 1.8e-19 69.2 0.0 1.7 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB E2F_TDP PF02319.15 gi|433591216|ref|YP_007280712.1| - 0.0066 15.9 0.0 0.015 14.8 0.0 1.6 1 0 0 1 1 1 1 E2F/DP family winged-helix DNA-binding domain Regulator_TrmB PF11495.3 gi|433591216|ref|YP_007280712.1| - 0.073 12.0 0.0 0.11 11.4 0.0 1.3 1 0 0 1 1 1 0 Archaeal transcriptional regulator TrmB Multi_Drug_Res PF00893.14 gi|433591217|ref|YP_007280713.1| - 9.7e-27 93.2 3.1 1.2e-26 92.9 2.1 1.1 1 0 0 1 1 1 1 Small Multidrug Resistance protein EmrE PF13536.1 gi|433591217|ref|YP_007280713.1| - 7.6e-06 26.1 6.5 9.6e-06 25.7 4.5 1.2 1 0 0 1 1 1 1 Multidrug resistance efflux transporter EamA PF00892.15 gi|433591217|ref|YP_007280713.1| - 0.043 13.8 8.8 0.068 13.2 6.1 1.5 1 1 0 1 1 1 0 EamA-like transporter family Lycopene_cycl PF05834.7 gi|433591218|ref|YP_007280714.1| - 4.1e-09 35.8 0.0 7e-09 35.0 0.0 1.3 1 1 0 1 1 1 1 Lycopene cyclase protein FAD_binding_2 PF00890.19 gi|433591218|ref|YP_007280714.1| - 1.1e-07 31.0 0.1 2e-07 30.2 0.1 1.3 1 0 0 1 1 1 1 FAD binding domain DAO PF01266.19 gi|433591218|ref|YP_007280714.1| - 3.7e-07 29.3 0.0 2.7e-05 23.2 0.0 2.2 2 0 0 2 2 2 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|433591218|ref|YP_007280714.1| - 6.3e-06 26.2 0.0 9.9e-06 25.5 0.0 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|433591218|ref|YP_007280714.1| - 7.8e-06 25.1 0.0 1.2e-05 24.5 0.0 1.3 1 0 0 1 1 1 1 FAD binding domain Thi4 PF01946.12 gi|433591218|ref|YP_007280714.1| - 9.4e-05 21.6 0.0 0.0002 20.5 0.0 1.5 1 0 0 1 1 1 1 Thi4 family Trp_halogenase PF04820.9 gi|433591218|ref|YP_007280714.1| - 0.00021 20.0 0.1 0.22 10.0 0.0 2.8 2 1 1 3 3 3 2 Tryptophan halogenase NAD_binding_8 PF13450.1 gi|433591218|ref|YP_007280714.1| - 0.00024 21.0 0.0 0.00072 19.5 0.0 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.9 gi|433591218|ref|YP_007280714.1| - 0.00035 19.1 0.1 0.0005 18.6 0.0 1.2 1 0 0 1 1 1 1 HI0933-like protein GIDA PF01134.17 gi|433591218|ref|YP_007280714.1| - 0.0012 17.8 0.0 0.0032 16.3 0.0 1.7 1 1 0 1 1 1 1 Glucose inhibited division protein A FAD_oxidored PF12831.2 gi|433591218|ref|YP_007280714.1| - 0.0018 17.4 0.8 0.0046 16.0 0.1 1.9 2 1 0 2 2 2 1 FAD dependent oxidoreductase CPSase_L_chain PF00289.17 gi|433591218|ref|YP_007280714.1| - 0.01 15.8 0.0 0.033 14.2 0.0 1.8 2 0 0 2 2 2 0 Carbamoyl-phosphate synthase L chain, N-terminal domain 3HCDH_N PF02737.13 gi|433591218|ref|YP_007280714.1| - 0.048 13.3 0.0 0.079 12.6 0.0 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_10 PF13460.1 gi|433591218|ref|YP_007280714.1| - 0.067 13.1 0.0 0.11 12.5 0.0 1.3 1 0 0 1 1 1 0 NADH(P)-binding TrkA_N PF02254.13 gi|433591218|ref|YP_007280714.1| - 0.07 13.1 0.0 0.14 12.2 0.0 1.4 1 0 0 1 1 1 0 TrkA-N domain HTH_20 PF12840.2 gi|433591219|ref|YP_007280715.1| - 0.00029 20.5 0.0 0.00043 20.0 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|433591219|ref|YP_007280715.1| - 0.00084 18.6 0.1 0.0015 17.8 0.1 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_1 PF00126.22 gi|433591219|ref|YP_007280715.1| - 0.0065 16.1 1.1 0.037 13.7 0.0 2.4 3 0 0 3 3 3 1 Bacterial regulatory helix-turn-helix protein, lysR family TrmB PF01978.14 gi|433591219|ref|YP_007280715.1| - 0.0081 15.8 0.0 0.012 15.3 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB DUF2250 PF10007.4 gi|433591219|ref|YP_007280715.1| - 0.014 15.2 0.0 0.021 14.7 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) Cdc6_C PF09079.6 gi|433591219|ref|YP_007280715.1| - 0.039 13.6 0.0 0.067 12.9 0.0 1.4 1 0 0 1 1 1 0 CDC6, C terminal DUF348 PF03990.9 gi|433591222|ref|YP_007280718.1| - 0.056 13.0 0.1 0.22 11.1 0.0 1.9 2 1 0 2 2 2 0 Domain of unknown function (DUF348) DDE_Tnp_1 PF01609.16 gi|433591223|ref|YP_007280719.1| - 8.1e-21 74.5 0.0 1.1e-20 74.0 0.0 1.1 1 0 0 1 1 1 1 Transposase DDE domain Beta-Casp PF10996.3 gi|433591224|ref|YP_007280720.1| - 3.9e-20 72.0 0.0 8.3e-20 70.9 0.0 1.6 1 0 0 1 1 1 1 Beta-Casp domain Lactamase_B PF00753.22 gi|433591224|ref|YP_007280720.1| - 2.2e-19 69.8 0.3 8.6e-19 67.9 0.1 2.1 2 1 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|433591224|ref|YP_007280720.1| - 5.7e-15 55.3 0.0 1.4e-14 54.0 0.0 1.7 1 0 0 1 1 1 1 Beta-lactamase superfamily domain RMMBL PF07521.7 gi|433591224|ref|YP_007280720.1| - 1.7e-08 34.1 0.0 8e-08 31.9 0.0 2.1 2 0 0 2 2 2 1 RNA-metabolising metallo-beta-lactamase DEP PF00610.16 gi|433591226|ref|YP_007280722.1| - 0.024 14.3 0.1 0.075 12.7 0.0 1.7 2 0 0 2 2 2 0 Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP) HATPase_c_3 PF13589.1 gi|433591227|ref|YP_007280723.1| - 3.3e-11 43.0 0.1 6.4e-11 42.0 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HTH_27 PF13463.1 gi|433591228|ref|YP_007280724.1| - 8.4e-07 29.2 0.2 1.3e-06 28.5 0.2 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_24 PF13412.1 gi|433591228|ref|YP_007280724.1| - 1.1e-06 27.9 0.1 1.7e-06 27.2 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|433591228|ref|YP_007280724.1| - 3.9e-06 26.4 0.5 5.4e-06 25.9 0.3 1.3 1 1 0 1 1 1 1 MarR family TFIIE_alpha PF02002.12 gi|433591228|ref|YP_007280724.1| - 3.3e-05 23.3 0.7 5.7e-05 22.5 0.2 1.5 1 1 1 2 2 2 1 TFIIE alpha subunit MarR PF01047.17 gi|433591228|ref|YP_007280724.1| - 3.6e-05 23.3 0.1 5.6e-05 22.7 0.1 1.3 1 0 0 1 1 1 1 MarR family RNA_pol_Rpc34 PF05158.7 gi|433591228|ref|YP_007280724.1| - 0.00012 21.4 0.1 0.00013 21.2 0.1 1.1 1 0 0 1 1 1 1 RNA polymerase Rpc34 subunit TrmB PF01978.14 gi|433591228|ref|YP_007280724.1| - 0.00022 20.8 0.2 0.0003 20.4 0.2 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB GntR PF00392.16 gi|433591228|ref|YP_007280724.1| - 0.0013 18.1 1.0 0.0019 17.5 0.7 1.4 1 1 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_20 PF12840.2 gi|433591228|ref|YP_007280724.1| - 0.0028 17.4 0.2 0.005 16.6 0.2 1.6 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_36 PF13730.1 gi|433591228|ref|YP_007280724.1| - 0.0034 17.4 0.5 0.046 13.8 0.1 2.5 1 1 1 2 2 2 1 Helix-turn-helix domain DUF2582 PF10771.4 gi|433591228|ref|YP_007280724.1| - 0.0047 16.7 0.0 0.0066 16.2 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF2582) Penicillinase_R PF03965.11 gi|433591228|ref|YP_007280724.1| - 0.011 15.8 0.1 0.017 15.1 0.1 1.4 1 0 0 1 1 1 0 Penicillinase repressor B-block_TFIIIC PF04182.7 gi|433591228|ref|YP_007280724.1| - 0.011 15.5 0.0 0.02 14.7 0.0 1.4 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC HTH_28 PF13518.1 gi|433591228|ref|YP_007280724.1| - 0.019 14.9 0.1 0.031 14.2 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_5 PF01022.15 gi|433591228|ref|YP_007280724.1| - 0.019 14.5 0.1 0.03 13.9 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Sigma70_r4_2 PF08281.7 gi|433591228|ref|YP_007280724.1| - 0.026 13.9 0.3 0.047 13.1 0.2 1.5 1 1 0 1 1 1 0 Sigma-70, region 4 HTH_11 PF08279.7 gi|433591228|ref|YP_007280724.1| - 0.029 13.9 0.1 0.046 13.3 0.1 1.3 1 0 0 1 1 1 0 HTH domain HTH_Mga PF08280.6 gi|433591228|ref|YP_007280724.1| - 0.03 14.0 0.2 0.042 13.6 0.1 1.2 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain HTH_12 PF08461.5 gi|433591228|ref|YP_007280724.1| - 0.032 13.9 0.4 0.047 13.4 0.3 1.5 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain HTH_DeoR PF08220.7 gi|433591228|ref|YP_007280724.1| - 0.059 12.9 0.2 0.083 12.4 0.1 1.2 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain PaaX PF07848.7 gi|433591228|ref|YP_007280724.1| - 0.063 13.2 0.3 0.1 12.6 0.2 1.3 1 0 0 1 1 1 0 PaaX-like protein HTH_29 PF13551.1 gi|433591228|ref|YP_007280724.1| - 0.064 13.4 0.1 0.091 12.9 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn helix ParB PF08775.5 gi|433591228|ref|YP_007280724.1| - 0.072 13.4 0.2 0.091 13.0 0.1 1.1 1 0 0 1 1 1 0 ParB family RepL PF05732.6 gi|433591228|ref|YP_007280724.1| - 0.11 11.7 0.0 0.15 11.2 0.0 1.2 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) DUF955 PF06114.8 gi|433591229|ref|YP_007280725.1| - 0.00027 20.6 0.0 0.00045 19.9 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF955) SprT-like PF10263.4 gi|433591229|ref|YP_007280725.1| - 0.0012 18.4 1.0 0.11 12.1 0.0 2.9 2 1 1 3 3 3 1 SprT-like family Peptidase_MA_2 PF13485.1 gi|433591229|ref|YP_007280725.1| - 0.016 15.2 0.0 0.057 13.4 0.0 1.8 2 0 0 2 2 2 0 Peptidase MA superfamily HTH_7 PF02796.10 gi|433591231|ref|YP_007280727.1| - 8e-07 28.8 0.0 1.8e-06 27.7 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase MarR_2 PF12802.2 gi|433591231|ref|YP_007280727.1| - 0.00014 21.4 0.2 0.00032 20.2 0.0 1.7 2 0 0 2 2 2 1 MarR family TrmB PF01978.14 gi|433591231|ref|YP_007280727.1| - 0.0002 20.9 0.0 0.00053 19.6 0.0 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.7 gi|433591231|ref|YP_007280727.1| - 0.00021 20.8 0.4 0.0015 18.1 0.0 2.4 2 1 1 3 3 3 1 HTH domain GntR PF00392.16 gi|433591231|ref|YP_007280727.1| - 0.00062 19.1 0.6 0.0036 16.6 0.0 2.3 2 1 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_23 PF13384.1 gi|433591231|ref|YP_007280727.1| - 0.0023 17.5 0.0 0.0046 16.5 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_27 PF13463.1 gi|433591231|ref|YP_007280727.1| - 0.0047 17.2 0.1 0.013 15.8 0.0 1.8 1 0 0 1 1 1 1 Winged helix DNA-binding domain Histone_HNS PF00816.16 gi|433591231|ref|YP_007280727.1| - 0.007 16.8 2.1 0.015 15.8 1.5 1.6 1 0 0 1 1 1 1 H-NS histone family HTH_20 PF12840.2 gi|433591231|ref|YP_007280727.1| - 0.012 15.4 0.1 0.035 13.9 0.0 1.8 2 0 0 2 2 1 0 Helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|433591231|ref|YP_007280727.1| - 0.013 15.2 0.0 0.11 12.3 0.0 2.1 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain WXG100 PF06013.7 gi|433591231|ref|YP_007280727.1| - 0.026 14.5 2.5 0.19 11.7 0.3 2.3 2 1 0 2 2 2 0 Proteins of 100 residues with WXG Bacillus_HBL PF05791.6 gi|433591231|ref|YP_007280727.1| - 0.03 13.6 0.5 0.045 13.1 0.3 1.4 1 0 0 1 1 1 0 Bacillus haemolytic enterotoxin (HBL) Rrf2 PF02082.15 gi|433591231|ref|YP_007280727.1| - 0.038 14.0 0.0 0.44 10.6 0.0 2.2 2 0 0 2 2 2 0 Transcriptional regulator UPF0122 PF04297.9 gi|433591231|ref|YP_007280727.1| - 0.048 13.6 1.4 0.5 10.4 0.4 2.6 1 1 1 2 2 2 0 Putative helix-turn-helix protein, YlxM / p13 like HTH_38 PF13936.1 gi|433591231|ref|YP_007280727.1| - 0.068 12.7 0.0 0.16 11.5 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Fe_dep_repress PF01325.14 gi|433591231|ref|YP_007280727.1| - 0.084 12.8 0.0 0.16 11.9 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_IclR PF09339.5 gi|433591231|ref|YP_007280727.1| - 0.09 12.3 0.0 0.18 11.4 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain Syntaxin-6_N PF09177.6 gi|433591231|ref|YP_007280727.1| - 0.16 12.3 3.7 0.27 11.6 2.1 1.6 1 1 0 1 1 1 0 Syntaxin 6, N-terminal Lge1 PF11488.3 gi|433591231|ref|YP_007280727.1| - 0.27 11.4 3.6 2.2 8.5 1.1 2.6 2 1 0 2 2 2 0 Transcriptional regulatory protein LGE1 Ribosomal_L29 PF00831.18 gi|433591231|ref|YP_007280727.1| - 2.1 8.0 4.7 0.95 9.1 1.2 2.0 2 0 0 2 2 2 0 Ribosomal L29 protein DDE_Tnp_1 PF01609.16 gi|433591232|ref|YP_007280728.1| - 1.5e-14 54.0 0.0 2.1e-14 53.5 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.6 gi|433591232|ref|YP_007280728.1| - 0.0027 17.5 0.0 0.0054 16.5 0.0 1.5 1 0 0 1 1 1 1 Transposase domain (DUF772) HTH_20 PF12840.2 gi|433591233|ref|YP_007280729.1| - 2.4e-10 40.0 0.7 5.5e-05 22.8 0.1 2.3 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_5 PF01022.15 gi|433591233|ref|YP_007280729.1| - 2.8e-07 30.0 0.0 1.6e-05 24.4 0.0 2.3 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|433591233|ref|YP_007280729.1| - 7.5e-07 28.4 0.0 0.0042 16.4 0.0 2.4 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|433591233|ref|YP_007280729.1| - 9.5e-05 22.0 0.0 0.0005 19.7 0.0 1.9 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_34 PF13601.1 gi|433591233|ref|YP_007280729.1| - 0.00076 19.4 0.0 0.36 10.9 0.0 2.2 2 0 0 2 2 2 2 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|433591233|ref|YP_007280729.1| - 0.00093 18.8 0.5 0.017 14.8 0.1 2.5 3 0 0 3 3 3 1 MarR family HTH_10 PF04967.7 gi|433591233|ref|YP_007280729.1| - 0.0041 16.6 0.0 0.043 13.3 0.0 2.3 2 0 0 2 2 2 1 HTH DNA binding domain HTH_27 PF13463.1 gi|433591233|ref|YP_007280729.1| - 0.012 15.9 0.1 0.31 11.3 0.0 2.8 3 1 1 4 4 4 0 Winged helix DNA-binding domain DUF2042 PF09743.4 gi|433591233|ref|YP_007280729.1| - 0.034 13.4 0.0 3 7.0 0.0 2.2 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2042) HTH_30 PF13556.1 gi|433591233|ref|YP_007280729.1| - 0.067 12.7 0.0 0.18 11.4 0.0 1.7 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain HisKA PF00512.20 gi|433591233|ref|YP_007280729.1| - 0.36 10.8 1.9 5.8 6.9 0.1 2.6 2 1 0 2 2 2 0 His Kinase A (phospho-acceptor) domain Cytochrom_D1 PF02239.11 gi|433591234|ref|YP_007280730.1| - 4.4e-06 25.2 1.8 0.0046 15.2 0.1 2.8 2 1 1 3 3 3 3 Cytochrome D1 heme domain PQQ_2 PF13360.1 gi|433591234|ref|YP_007280730.1| - 0.014 14.8 0.1 0.13 11.6 0.0 2.3 2 0 0 2 2 2 0 PQQ-like domain DUF1513 PF07433.6 gi|433591234|ref|YP_007280730.1| - 0.038 12.8 0.1 0.16 10.8 0.0 2.0 2 1 0 2 2 2 0 Protein of unknown function (DUF1513) Prim-Pol PF09250.6 gi|433591234|ref|YP_007280730.1| - 0.47 10.4 3.8 11 5.9 0.1 3.1 1 1 1 3 3 3 0 Bifunctional DNA primase/polymerase, N-terminal CopC PF04234.7 gi|433591235|ref|YP_007280731.1| - 2.9e-19 69.4 0.3 9.8e-19 67.7 0.1 1.9 2 0 0 2 2 2 1 CopC domain CopD PF05425.8 gi|433591235|ref|YP_007280731.1| - 4.9e-09 36.3 13.2 4.9e-09 36.3 9.1 5.5 4 2 1 5 5 5 2 Copper resistance protein D FixH PF05751.6 gi|433591235|ref|YP_007280731.1| - 0.00013 21.7 1.3 0.00043 20.1 0.0 2.4 2 1 0 2 2 2 1 FixH YtkA PF13115.1 gi|433591235|ref|YP_007280731.1| - 0.0047 17.2 0.3 0.067 13.5 0.0 2.8 2 1 1 3 3 3 1 YtkA-like OrfB_Zn_ribbon PF07282.6 gi|433591236|ref|YP_007280732.1| - 3.1e-22 77.9 0.2 5.9e-22 77.1 0.1 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Lipase_GDSL_2 PF13472.1 gi|433591236|ref|YP_007280732.1| - 0.029 14.4 0.7 0.22 11.6 0.1 2.1 1 1 1 2 2 2 0 GDSL-like Lipase/Acylhydrolase family RHH_3 PF12651.2 gi|433591237|ref|YP_007280733.1| - 0.033 13.9 0.0 0.052 13.2 0.0 1.3 1 0 0 1 1 1 0 Ribbon-helix-helix domain MFS_1 PF07690.11 gi|433591238|ref|YP_007280734.1| - 7.7e-45 153.1 56.3 2.8e-31 108.5 21.0 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_3 PF05977.8 gi|433591238|ref|YP_007280734.1| - 2.2e-15 55.7 28.4 2.8e-15 55.4 19.7 1.0 1 0 0 1 1 1 1 Transmembrane secretion effector Sugar_tr PF00083.19 gi|433591238|ref|YP_007280734.1| - 1.4e-05 23.8 7.3 1.4e-05 23.8 5.1 2.5 2 1 0 2 2 2 2 Sugar (and other) transporter MFS_2 PF13347.1 gi|433591238|ref|YP_007280734.1| - 9e-05 21.0 3.2 9e-05 21.0 2.2 2.4 1 1 1 2 2 2 1 MFS/sugar transport protein OATP PF03137.15 gi|433591238|ref|YP_007280734.1| - 6.2 4.7 20.6 0.084 10.9 0.8 3.5 2 2 2 4 4 4 0 Organic Anion Transporter Polypeptide (OATP) family Not3 PF04065.10 gi|433591240|ref|YP_007280736.1| - 0.018 14.3 1.6 0.029 13.6 0.9 1.4 1 1 0 1 1 1 0 Not1 N-terminal domain, CCR4-Not complex component Cupredoxin_1 PF13473.1 gi|433591241|ref|YP_007280737.1| - 0.083 12.7 0.0 0.12 12.2 0.0 1.2 1 0 0 1 1 1 0 Cupredoxin-like domain Nudix_N_2 PF14803.1 gi|433591242|ref|YP_007280738.1| - 0.012 15.2 0.4 0.031 13.9 0.3 1.6 1 1 0 1 1 1 0 Nudix N-terminal TerY-C PF15616.1 gi|433591242|ref|YP_007280738.1| - 0.029 14.3 0.8 0.033 14.1 0.6 1.1 1 0 0 1 1 1 0 TerY-C metal binding domain zf-TFIIB PF13453.1 gi|433591242|ref|YP_007280738.1| - 0.037 13.2 0.7 0.06 12.5 0.5 1.4 1 1 0 1 1 1 0 Transcription factor zinc-finger zinc_ribbon_2 PF13240.1 gi|433591242|ref|YP_007280738.1| - 0.038 13.4 2.5 0.6 9.6 0.1 2.6 3 0 0 3 3 3 0 zinc-ribbon domain DZR PF12773.2 gi|433591242|ref|YP_007280738.1| - 0.039 13.7 0.5 0.06 13.1 0.4 1.4 1 1 0 1 1 1 0 Double zinc ribbon PhnA_Zn_Ribbon PF08274.7 gi|433591242|ref|YP_007280738.1| - 0.04 13.6 0.5 0.091 12.5 0.3 1.7 1 1 0 1 1 1 0 PhnA Zinc-Ribbon zf-ribbon_3 PF13248.1 gi|433591242|ref|YP_007280738.1| - 0.044 12.9 1.6 0.65 9.2 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain RNHCP PF12647.2 gi|433591242|ref|YP_007280738.1| - 0.058 13.2 0.5 0.069 12.9 0.3 1.2 1 0 0 1 1 1 0 RNHCP domain OrfB_Zn_ribbon PF07282.6 gi|433591242|ref|YP_007280738.1| - 0.073 12.7 0.5 0.094 12.3 0.3 1.2 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zinc_ribbon_4 PF13717.1 gi|433591242|ref|YP_007280738.1| - 0.11 12.2 2.8 2 8.2 0.0 2.6 3 0 0 3 3 3 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|433591242|ref|YP_007280738.1| - 0.14 11.7 3.0 2 8.0 0.0 2.6 3 0 0 3 3 3 0 zinc-ribbon domain FdhE PF04216.7 gi|433591242|ref|YP_007280738.1| - 0.15 11.7 0.2 0.17 11.6 0.1 1.0 1 0 0 1 1 1 0 Protein involved in formate dehydrogenase formation Zn-ribbon_8 PF09723.5 gi|433591242|ref|YP_007280738.1| - 0.5 10.3 3.2 4.3 7.3 2.0 2.1 1 1 0 1 1 1 0 Zinc ribbon domain CorC_HlyC PF03471.12 gi|433591243|ref|YP_007280739.1| - 0.058 13.1 0.0 0.076 12.8 0.0 1.2 1 0 0 1 1 1 0 Transporter associated domain DUF1488 PF07369.6 gi|433591243|ref|YP_007280739.1| - 0.1 12.4 0.0 0.13 12.1 0.0 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF1488) PadR PF03551.9 gi|433591244|ref|YP_007280740.1| - 2.6e-16 59.1 1.2 3.4e-16 58.7 0.8 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_45 PF14947.1 gi|433591244|ref|YP_007280740.1| - 1.9e-06 27.5 0.2 2.9e-06 26.9 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_27 PF13463.1 gi|433591244|ref|YP_007280740.1| - 4.3e-05 23.7 0.0 5.5e-05 23.4 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain DUF1495 PF07381.6 gi|433591244|ref|YP_007280740.1| - 0.015 14.9 0.0 0.021 14.4 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) HTH_34 PF13601.1 gi|433591244|ref|YP_007280740.1| - 0.017 15.1 0.0 0.022 14.8 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|433591244|ref|YP_007280740.1| - 0.065 12.9 0.1 4 7.1 0.0 2.3 2 0 0 2 2 2 0 MarR family OrfB_IS605 PF01385.14 gi|433591245|ref|YP_007280741.1| - 5.2e-55 186.3 0.1 6.7e-55 185.9 0.1 1.1 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|433591245|ref|YP_007280741.1| - 1.6e-19 69.2 1.3 3.7e-19 68.1 0.9 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Complex1_30kDa PF00329.14 gi|433591245|ref|YP_007280741.1| - 0.057 13.6 0.1 0.25 11.6 0.0 2.1 2 0 0 2 2 2 0 Respiratory-chain NADH dehydrogenase, 30 Kd subunit DUF3791 PF12668.2 gi|433591245|ref|YP_007280741.1| - 0.1 12.2 0.0 0.28 10.8 0.0 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF3791) Ribosomal_L37ae PF01780.14 gi|433591245|ref|YP_007280741.1| - 0.6 10.0 3.6 0.36 10.7 0.4 2.1 3 0 0 3 3 3 0 Ribosomal L37ae protein family tRNA_anti-codon PF01336.20 gi|433591246|ref|YP_007280742.1| - 0.0007 19.3 0.0 0.0013 18.4 0.0 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain SPT6_acidic PF14632.1 gi|433591246|ref|YP_007280742.1| - 0.46 10.6 3.9 1.9 8.6 2.7 2.0 1 1 0 1 1 1 0 Acidic N-terminal SPT6 HTH_5 PF01022.15 gi|433591249|ref|YP_007280745.1| - 6.1e-14 51.4 0.4 8.3e-14 50.9 0.2 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|433591249|ref|YP_007280745.1| - 7.7e-14 51.2 0.1 1.2e-13 50.6 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|433591249|ref|YP_007280745.1| - 0.00015 21.4 0.0 0.00055 19.5 0.0 1.9 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB DUF4123 PF13503.1 gi|433591249|ref|YP_007280745.1| - 0.002 18.1 0.0 0.0021 18.0 0.0 1.3 1 1 0 1 1 1 1 Domain of unknown function (DUF4123) HTH_24 PF13412.1 gi|433591249|ref|YP_007280745.1| - 0.0022 17.3 0.0 0.0094 15.3 0.0 2.0 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding PaaX PF07848.7 gi|433591249|ref|YP_007280745.1| - 0.0031 17.4 0.0 0.0048 16.8 0.0 1.3 1 0 0 1 1 1 1 PaaX-like protein Penicillinase_R PF03965.11 gi|433591249|ref|YP_007280745.1| - 0.0071 16.4 0.0 0.0098 15.9 0.0 1.3 1 0 0 1 1 1 1 Penicillinase repressor HTH_34 PF13601.1 gi|433591249|ref|YP_007280745.1| - 0.011 15.7 0.0 0.016 15.2 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain MarR PF01047.17 gi|433591249|ref|YP_007280745.1| - 0.011 15.3 0.0 0.036 13.7 0.0 1.8 2 0 0 2 2 2 0 MarR family Rrf2 PF02082.15 gi|433591249|ref|YP_007280745.1| - 0.023 14.8 0.0 0.042 13.9 0.0 1.6 2 0 0 2 2 2 0 Transcriptional regulator HTH_CodY PF08222.6 gi|433591249|ref|YP_007280745.1| - 0.029 13.6 0.0 0.067 12.5 0.0 1.6 2 0 0 2 2 2 0 CodY helix-turn-helix domain MarR_2 PF12802.2 gi|433591249|ref|YP_007280745.1| - 0.035 13.7 0.4 0.099 12.3 0.1 1.9 2 1 0 2 2 2 0 MarR family DUF2513 PF10711.4 gi|433591249|ref|YP_007280745.1| - 0.045 13.8 0.0 0.059 13.4 0.0 1.2 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) HTH_27 PF13463.1 gi|433591249|ref|YP_007280745.1| - 0.069 13.4 0.0 0.13 12.5 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain PadR PF03551.9 gi|433591249|ref|YP_007280745.1| - 0.094 12.5 0.1 0.37 10.5 0.0 2.0 2 1 0 2 2 2 0 Transcriptional regulator PadR-like family TFIIE_alpha PF02002.12 gi|433591249|ref|YP_007280745.1| - 0.098 12.1 0.0 0.16 11.4 0.0 1.3 1 0 0 1 1 1 0 TFIIE alpha subunit Fe_dep_repress PF01325.14 gi|433591249|ref|YP_007280745.1| - 0.14 12.1 0.1 0.24 11.3 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain DUF318 PF03773.8 gi|433591250|ref|YP_007280746.1| - 1.9e-61 207.7 11.1 2.1e-61 207.5 7.7 1.0 1 0 0 1 1 1 1 Predicted permease DDE_Tnp_IS240 PF13610.1 gi|433591252|ref|YP_007280748.1| - 2.6e-15 56.6 0.1 3.3e-15 56.2 0.1 1.1 1 0 0 1 1 1 1 DDE domain DDE_Tnp_IS66 PF03050.9 gi|433591252|ref|YP_007280748.1| - 3e-07 29.9 0.1 6.2e-07 28.9 0.1 1.6 1 1 0 1 1 1 1 Transposase IS66 family DDE_3 PF13358.1 gi|433591252|ref|YP_007280748.1| - 0.0038 16.9 0.0 0.017 14.9 0.0 1.9 1 1 0 1 1 1 1 DDE superfamily endonuclease HTH_28 PF13518.1 gi|433591252|ref|YP_007280748.1| - 0.0088 16.0 0.0 0.19 11.7 0.0 2.5 2 0 0 2 2 2 1 Helix-turn-helix domain DDE_Tnp_1 PF01609.16 gi|433591252|ref|YP_007280748.1| - 0.013 15.0 3.5 1.2 8.6 2.4 2.2 1 1 0 1 1 1 0 Transposase DDE domain FSA_C PF10479.4 gi|433591252|ref|YP_007280748.1| - 0.02 13.0 0.0 0.028 12.5 0.0 1.2 1 0 0 1 1 1 0 Fragile site-associated protein C-terminus rve PF00665.21 gi|433591252|ref|YP_007280748.1| - 0.025 14.6 0.1 0.066 13.3 0.0 1.7 2 0 0 2 2 2 0 Integrase core domain PadR PF03551.9 gi|433591254|ref|YP_007280750.1| - 1.1e-13 50.6 0.3 1.4e-13 50.4 0.2 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_45 PF14947.1 gi|433591254|ref|YP_007280750.1| - 0.00014 21.6 0.1 0.00021 21.0 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_27 PF13463.1 gi|433591254|ref|YP_007280750.1| - 0.0023 18.1 0.0 0.0032 17.7 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain MotA_activ PF09114.5 gi|433591254|ref|YP_007280750.1| - 0.0053 16.4 0.0 0.0066 16.1 0.0 1.2 1 0 0 1 1 1 1 Transcription factor MotA, activation domain HTH_34 PF13601.1 gi|433591254|ref|YP_007280750.1| - 0.025 14.6 0.0 0.032 14.2 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF4358 PF14270.1 gi|433591254|ref|YP_007280750.1| - 0.079 12.8 0.0 0.1 12.4 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4358) DUF1495 PF07381.6 gi|433591254|ref|YP_007280750.1| - 0.094 12.3 0.0 0.12 12.0 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) HTH_IclR PF09339.5 gi|433591255|ref|YP_007280751.1| - 3.4e-05 23.3 0.1 6.2e-05 22.5 0.1 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|433591255|ref|YP_007280751.1| - 3.8e-05 23.2 0.4 9.5e-05 21.9 0.3 1.6 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|433591255|ref|YP_007280751.1| - 5e-05 23.5 0.1 0.0001 22.5 0.1 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.14 gi|433591255|ref|YP_007280751.1| - 0.0001 21.9 0.0 0.00018 21.1 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|433591255|ref|YP_007280751.1| - 0.0018 17.6 0.0 0.0027 17.0 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|433591255|ref|YP_007280751.1| - 0.017 14.8 0.1 0.042 13.6 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HemN_C PF06969.11 gi|433591255|ref|YP_007280751.1| - 0.022 14.8 0.0 0.047 13.7 0.0 1.5 1 0 0 1 1 1 0 HemN C-terminal domain GntR PF00392.16 gi|433591255|ref|YP_007280751.1| - 0.026 13.9 0.2 0.054 12.9 0.2 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_23 PF13384.1 gi|433591255|ref|YP_007280751.1| - 0.029 14.0 0.2 0.057 13.0 0.1 1.4 1 0 0 1 1 1 0 Homeodomain-like domain HTH_28 PF13518.1 gi|433591255|ref|YP_007280751.1| - 0.029 14.3 0.1 0.059 13.3 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|433591255|ref|YP_007280751.1| - 0.029 14.1 0.0 0.056 13.2 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_45 PF14947.1 gi|433591255|ref|YP_007280751.1| - 0.035 13.9 0.0 0.066 13.0 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix MarR PF01047.17 gi|433591255|ref|YP_007280751.1| - 0.05 13.3 0.0 0.12 12.1 0.0 1.6 1 0 0 1 1 1 0 MarR family CENP-B_N PF04218.8 gi|433591255|ref|YP_007280751.1| - 0.087 12.2 0.0 0.21 11.0 0.0 1.7 1 0 0 1 1 1 0 CENP-B N-terminal DNA-binding domain Trp_repressor PF01371.14 gi|433591255|ref|YP_007280751.1| - 0.14 12.0 0.0 0.27 11.1 0.0 1.4 1 0 0 1 1 1 0 Trp repressor protein SnoaL PF07366.7 gi|433591256|ref|YP_007280752.1| - 4.1e-27 94.2 0.1 4.6e-27 94.0 0.1 1.0 1 0 0 1 1 1 1 SnoaL-like polyketide cyclase SnoaL_2 PF12680.2 gi|433591256|ref|YP_007280752.1| - 1e-18 67.6 0.2 1.2e-18 67.3 0.1 1.1 1 0 0 1 1 1 1 SnoaL-like domain DUF4440 PF14534.1 gi|433591256|ref|YP_007280752.1| - 1.4e-05 25.2 0.0 1.7e-05 24.9 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4440) SnoaL_3 PF13474.1 gi|433591256|ref|YP_007280752.1| - 0.00026 21.0 0.0 0.00035 20.6 0.0 1.3 1 0 0 1 1 1 1 SnoaL-like domain CaMKII_AD PF08332.5 gi|433591256|ref|YP_007280752.1| - 0.0058 16.5 0.0 0.011 15.5 0.0 1.4 1 0 0 1 1 1 1 Calcium/calmodulin dependent protein kinase II Association SnoaL_4 PF13577.1 gi|433591256|ref|YP_007280752.1| - 0.025 14.4 0.0 0.042 13.7 0.0 1.5 1 1 0 1 1 1 0 SnoaL-like domain NUMOD1 PF07453.8 gi|433591257|ref|YP_007280753.1| - 0.00056 19.6 0.1 0.0029 17.3 0.0 2.2 2 0 0 2 2 2 1 NUMOD1 domain Resolvase PF00239.16 gi|433591257|ref|YP_007280753.1| - 0.0012 18.7 1.1 0.0017 18.2 0.3 1.6 2 0 0 2 2 2 1 Resolvase, N terminal domain HTH_23 PF13384.1 gi|433591257|ref|YP_007280753.1| - 0.033 13.8 0.0 0.085 12.5 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain Arch_ATPase PF01637.13 gi|433591258|ref|YP_007280754.1| - 3e-36 125.2 0.0 5.3e-36 124.4 0.0 1.4 1 1 0 1 1 1 1 Archaeal ATPase DUF234 PF03008.9 gi|433591258|ref|YP_007280754.1| - 4.6e-16 58.7 0.0 1.1e-15 57.5 0.0 1.7 1 0 0 1 1 1 1 Archaea bacterial proteins of unknown function AAA_22 PF13401.1 gi|433591258|ref|YP_007280754.1| - 6.7e-07 29.4 0.0 1.3e-06 28.6 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_14 PF13173.1 gi|433591258|ref|YP_007280754.1| - 4.5e-06 26.5 0.0 8.3e-06 25.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|433591258|ref|YP_007280754.1| - 8e-06 25.9 0.0 1.8e-05 24.8 0.0 1.6 1 0 0 1 1 1 1 AAA ATPase domain HTH_5 PF01022.15 gi|433591258|ref|YP_007280754.1| - 6.3e-05 22.5 0.0 0.00015 21.3 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.5 gi|433591258|ref|YP_007280754.1| - 0.00017 21.1 0.1 0.00055 19.4 0.1 1.9 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|433591258|ref|YP_007280754.1| - 0.00025 20.6 0.0 0.00072 19.1 0.0 1.8 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|433591258|ref|YP_007280754.1| - 0.0044 16.8 0.1 0.019 14.7 0.0 2.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|433591258|ref|YP_007280754.1| - 0.013 14.8 0.0 0.026 13.8 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_27 PF13463.1 gi|433591258|ref|YP_007280754.1| - 0.045 14.0 0.0 0.16 12.2 0.0 2.0 1 0 0 1 1 1 0 Winged helix DNA-binding domain TrmB PF01978.14 gi|433591258|ref|YP_007280754.1| - 0.078 12.7 0.0 0.18 11.5 0.0 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DUF21 PF01595.15 gi|433591260|ref|YP_007280756.1| - 7.6e-29 100.3 0.4 1.1e-28 99.8 0.3 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF21 CBS PF00571.23 gi|433591260|ref|YP_007280756.1| - 1.4e-09 37.5 0.3 1.6e-06 27.7 0.0 2.3 2 0 0 2 2 2 2 CBS domain Usp PF00582.21 gi|433591261|ref|YP_007280757.1| - 2.9e-29 102.0 0.4 3.4e-29 101.8 0.3 1.0 1 0 0 1 1 1 1 Universal stress protein family Amidohydro_3 PF07969.6 gi|433591261|ref|YP_007280757.1| - 0.044 12.9 0.0 0.045 12.9 0.0 1.1 1 0 0 1 1 1 0 Amidohydrolase family Tub PF01167.13 gi|433591261|ref|YP_007280757.1| - 0.15 11.0 0.0 0.18 10.7 0.0 1.1 1 0 0 1 1 1 0 Tub family Usp PF00582.21 gi|433591262|ref|YP_007280758.1| - 1.5e-53 180.7 6.8 1.7e-29 102.7 0.0 2.0 2 0 0 2 2 2 2 Universal stress protein family Ag332 PF04671.7 gi|433591262|ref|YP_007280758.1| - 0.064 13.0 0.0 8.5 6.2 0.0 2.7 2 0 0 2 2 2 0 Erythrocyte membrane-associated giant protein antigen 332 Usp PF00582.21 gi|433591263|ref|YP_007280759.1| - 6.5e-25 87.9 4.6 7.3e-25 87.7 3.2 1.0 1 0 0 1 1 1 1 Universal stress protein family GARS_N PF02844.10 gi|433591263|ref|YP_007280759.1| - 0.026 15.0 0.0 0.33 11.4 0.0 2.1 1 1 1 2 2 2 0 Phosphoribosylglycinamide synthetase, N domain Usp PF00582.21 gi|433591264|ref|YP_007280760.1| - 0.0013 18.9 1.7 0.0017 18.5 1.2 1.4 1 1 0 1 1 1 1 Universal stress protein family Cytochrom_D1 PF02239.11 gi|433591265|ref|YP_007280761.1| - 1.1e-60 204.9 0.0 1.4e-60 204.5 0.0 1.2 1 0 0 1 1 1 1 Cytochrome D1 heme domain PQQ_2 PF13360.1 gi|433591265|ref|YP_007280761.1| - 0.00027 20.4 0.1 0.15 11.5 0.0 2.3 2 0 0 2 2 2 2 PQQ-like domain SGL PF08450.7 gi|433591265|ref|YP_007280761.1| - 0.037 13.4 0.0 3 7.1 0.0 3.1 1 1 2 3 3 3 0 SMP-30/Gluconolaconase/LRE-like region PQQ_3 PF13570.1 gi|433591265|ref|YP_007280761.1| - 0.039 14.2 7.5 1.5 9.2 0.0 5.0 5 2 0 5 5 5 0 PQQ-like domain Oxidored_molyb PF00174.14 gi|433591266|ref|YP_007280762.1| - 2e-30 105.4 0.0 2.4e-30 105.1 0.0 1.0 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain CMD PF02627.15 gi|433591267|ref|YP_007280763.1| - 3.2e-13 49.3 5.1 7.8e-12 44.8 0.8 2.8 2 1 0 2 2 2 2 Carboxymuconolactone decarboxylase family MaoC_dehydratas PF01575.14 gi|433591268|ref|YP_007280764.1| - 4.2e-17 61.6 0.0 5.4e-17 61.3 0.0 1.1 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.1 gi|433591268|ref|YP_007280764.1| - 4.3e-09 36.2 0.0 6.6e-09 35.6 0.0 1.3 1 0 0 1 1 1 1 N-terminal half of MaoC dehydratase FabA PF07977.8 gi|433591268|ref|YP_007280764.1| - 0.06 12.8 0.0 0.08 12.4 0.0 1.3 1 0 0 1 1 1 0 FabA-like domain MFS_1 PF07690.11 gi|433591269|ref|YP_007280765.1| - 6e-56 189.6 80.2 1.2e-39 136.0 30.8 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|433591269|ref|YP_007280765.1| - 1.3e-05 24.0 34.5 6.6e-05 21.6 23.9 2.5 1 1 0 1 1 1 1 Sugar (and other) transporter MFS_1_like PF12832.2 gi|433591269|ref|YP_007280765.1| - 0.0072 16.0 2.9 0.015 15.0 0.4 2.7 3 0 0 3 3 3 1 MFS_1 like family Epimerase PF01370.16 gi|433591270|ref|YP_007280766.1| - 3.2e-42 144.5 0.2 3.9e-42 144.3 0.2 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|433591270|ref|YP_007280766.1| - 7.9e-13 47.9 0.1 1.1e-12 47.4 0.0 1.2 1 1 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.14 gi|433591270|ref|YP_007280766.1| - 4e-12 45.4 0.1 7e-12 44.6 0.0 1.3 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.7 gi|433591270|ref|YP_007280766.1| - 3.6e-10 39.1 0.1 2.1e-07 30.1 0.0 2.2 2 0 0 2 2 2 2 Male sterility protein Polysacc_synt_2 PF02719.10 gi|433591270|ref|YP_007280766.1| - 4.7e-10 38.8 0.1 1.3e-06 27.5 0.0 2.7 3 0 0 3 3 3 2 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.1 gi|433591270|ref|YP_007280766.1| - 5e-07 29.9 0.0 6.8e-07 29.4 0.0 1.3 1 0 0 1 1 1 1 NADH(P)-binding adh_short PF00106.20 gi|433591270|ref|YP_007280766.1| - 5.4e-07 29.6 0.4 0.00098 19.0 0.0 2.4 1 1 1 2 2 2 2 short chain dehydrogenase KR PF08659.5 gi|433591270|ref|YP_007280766.1| - 0.0012 18.5 0.0 0.15 11.6 0.0 2.2 2 0 0 2 2 2 1 KR domain DUF1188 PF06690.6 gi|433591270|ref|YP_007280766.1| - 0.059 12.4 0.0 0.091 11.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1188) NAD_binding_7 PF13241.1 gi|433591270|ref|YP_007280766.1| - 0.098 12.9 0.1 0.19 11.9 0.0 1.7 1 1 0 1 1 1 0 Putative NAD(P)-binding PEPcase PF00311.12 gi|433591271|ref|YP_007280767.1| - 7.6e-241 801.2 0.0 1.1e-240 800.7 0.0 1.2 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxylase PEPcase_2 PF14010.1 gi|433591271|ref|YP_007280767.1| - 2.9e-05 22.5 0.0 5e-05 21.8 0.0 1.3 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxylase Activator-TraM PF11657.3 gi|433591271|ref|YP_007280767.1| - 0.017 14.5 2.3 0.047 13.1 0.2 2.6 2 1 1 3 3 3 0 Transcriptional activator TraM Peptidase_M16 PF00675.15 gi|433591271|ref|YP_007280767.1| - 0.11 12.2 2.1 0.14 11.9 0.1 2.2 2 0 0 2 2 2 0 Insulinase (Peptidase family M16) Fer4_11 PF13247.1 gi|433591272|ref|YP_007280768.1| - 3.4e-16 58.9 12.4 2e-15 56.4 4.0 3.1 2 1 1 3 3 3 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|433591272|ref|YP_007280768.1| - 5.1e-14 52.3 25.7 2.1e-05 24.7 0.6 4.5 3 1 1 4 4 4 4 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|433591272|ref|YP_007280768.1| - 5e-10 39.4 23.5 1.3e-05 25.3 4.7 4.2 3 1 1 4 4 4 3 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|433591272|ref|YP_007280768.1| - 1.2e-09 37.5 32.0 1.7e-05 24.4 1.5 4.6 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|433591272|ref|YP_007280768.1| - 8.1e-08 31.8 34.5 0.00018 21.2 1.8 4.5 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_10 PF13237.1 gi|433591272|ref|YP_007280768.1| - 3.8e-07 29.7 27.4 0.00081 19.1 8.3 3.9 1 1 3 4 4 4 3 4Fe-4S dicluster domain Fer4 PF00037.22 gi|433591272|ref|YP_007280768.1| - 3.7e-06 26.3 36.4 9.9e-05 21.7 2.3 5.0 5 0 0 5 5 5 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|433591272|ref|YP_007280768.1| - 5.7e-05 23.1 27.3 0.0015 18.7 1.4 4.3 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|433591272|ref|YP_007280768.1| - 8.1e-05 22.9 16.7 0.012 15.9 0.6 4.1 4 0 0 4 4 4 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|433591272|ref|YP_007280768.1| - 0.00094 19.1 4.2 0.00094 19.1 2.9 3.5 2 2 2 4 4 4 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|433591272|ref|YP_007280768.1| - 0.0054 16.5 19.4 0.23 11.3 6.5 3.3 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|433591272|ref|YP_007280768.1| - 0.069 13.5 23.1 2.4 8.6 0.2 4.5 3 1 0 3 3 3 0 4Fe-4S dicluster domain SHOCT PF09851.4 gi|433591272|ref|YP_007280768.1| - 0.32 10.5 7.2 0.88 9.1 0.0 2.8 2 0 0 2 2 2 0 Short C-terminal domain Fer4_3 PF12798.2 gi|433591272|ref|YP_007280768.1| - 0.5 11.0 42.2 0.35 11.5 3.8 4.3 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_15 PF13459.1 gi|433591272|ref|YP_007280768.1| - 2.1 8.9 22.5 0.24 12.0 1.0 4.7 4 1 1 5 5 5 0 4Fe-4S single cluster domain Fer4_16 PF13484.1 gi|433591272|ref|YP_007280768.1| - 2.9 8.7 28.0 5.4 7.8 2.2 4.4 2 1 3 5 5 5 0 4Fe-4S double cluster binding domain HMGL-like PF00682.14 gi|433591274|ref|YP_007280770.1| - 1.4e-59 201.6 0.9 3.3e-59 200.4 0.6 1.6 1 0 0 1 1 1 1 HMGL-like LeuA_dimer PF08502.5 gi|433591274|ref|YP_007280770.1| - 6.2e-30 103.7 2.5 1.2e-29 102.7 1.7 1.5 1 0 0 1 1 1 1 LeuA allosteric (dimerisation) domain DUF192 PF02643.10 gi|433591275|ref|YP_007280771.1| - 9.7e-23 79.9 0.0 1.2e-22 79.6 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized ACR, COG1430 HTH_27 PF13463.1 gi|433591276|ref|YP_007280772.1| - 0.12 12.6 0.0 0.2 12.0 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain adh_short PF00106.20 gi|433591278|ref|YP_007280774.1| - 1.8e-34 119.0 0.4 2.6e-34 118.5 0.3 1.2 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|433591278|ref|YP_007280774.1| - 3.2e-19 69.6 0.0 4.1e-19 69.3 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|433591278|ref|YP_007280774.1| - 4.5e-15 55.7 0.0 8.9e-15 54.8 0.0 1.4 1 0 0 1 1 1 1 KR domain NAD_binding_10 PF13460.1 gi|433591278|ref|YP_007280774.1| - 2.8e-10 40.4 1.6 5.6e-10 39.5 1.1 1.6 1 1 0 1 1 1 1 NADH(P)-binding Epimerase PF01370.16 gi|433591278|ref|YP_007280774.1| - 6.6e-08 32.2 0.0 1.4e-07 31.1 0.0 1.6 2 0 0 2 2 2 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|433591278|ref|YP_007280774.1| - 1.7e-06 27.1 0.1 2.9e-06 26.3 0.1 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain NmrA PF05368.8 gi|433591278|ref|YP_007280774.1| - 0.00025 20.3 0.1 0.00037 19.8 0.0 1.2 1 0 0 1 1 1 1 NmrA-like family Eno-Rase_NADH_b PF12242.3 gi|433591278|ref|YP_007280774.1| - 0.0039 16.9 0.0 0.0085 15.8 0.0 1.5 1 0 0 1 1 1 1 NAD(P)H binding domain of trans-2-enoyl-CoA reductase DUF1776 PF08643.5 gi|433591278|ref|YP_007280774.1| - 0.004 16.3 0.0 0.0059 15.7 0.0 1.2 1 0 0 1 1 1 1 Fungal family of unknown function (DUF1776) TrkA_N PF02254.13 gi|433591278|ref|YP_007280774.1| - 0.016 15.1 0.4 0.054 13.4 0.0 2.0 2 0 0 2 2 2 0 TrkA-N domain NanE PF04131.9 gi|433591278|ref|YP_007280774.1| - 0.064 12.2 0.1 0.098 11.6 0.1 1.2 1 0 0 1 1 1 0 Putative N-acetylmannosamine-6-phosphate epimerase Endonuclease_5 PF04493.9 gi|433591279|ref|YP_007280775.1| - 7.3e-45 152.8 0.0 1.2e-44 152.1 0.0 1.3 1 1 0 1 1 1 1 Endonuclease V DUF99 PF01949.11 gi|433591279|ref|YP_007280775.1| - 0.0043 16.1 0.1 0.2 10.7 0.0 2.2 2 0 0 2 2 2 2 Protein of unknown function DUF99 Rhomboid PF01694.17 gi|433591280|ref|YP_007280776.1| - 3.1e-23 82.4 14.7 3.1e-23 82.4 10.2 1.5 2 0 0 2 2 2 1 Rhomboid family zf-AN1 PF01428.11 gi|433591280|ref|YP_007280776.1| - 1.6e-13 50.2 5.6 2.2e-13 49.8 3.9 1.2 1 0 0 1 1 1 1 AN1-like Zinc finger zf-HIT PF04438.11 gi|433591280|ref|YP_007280776.1| - 0.018 14.7 5.2 0.026 14.1 3.6 1.2 1 0 0 1 1 1 0 HIT zinc finger DUF1751 PF08551.5 gi|433591280|ref|YP_007280776.1| - 0.039 14.2 0.7 0.039 14.2 0.5 2.1 1 1 0 2 2 2 0 Eukaryotic integral membrane protein (DUF1751) zf-UBP PF02148.14 gi|433591280|ref|YP_007280776.1| - 1 9.5 5.9 1.8 8.7 4.1 1.4 1 0 0 1 1 1 0 Zn-finger in ubiquitin-hydrolases and other protein Acyl_transf_3 PF01757.17 gi|433591281|ref|YP_007280777.1| - 0.0079 15.0 0.5 0.0079 15.0 0.3 1.0 1 0 0 1 1 1 1 Acyltransferase family Acetyltransf_11 PF13720.1 gi|433591282|ref|YP_007280778.1| - 0.091 13.0 0.3 0.18 12.0 0.1 1.6 1 1 1 2 2 2 0 Udp N-acetylglucosamine O-acyltransferase; Domain 2 DNA_pol_B_thumb PF14791.1 gi|433591283|ref|YP_007280779.1| - 1.6e-25 88.5 0.0 4.2e-25 87.2 0.0 1.8 1 0 0 1 1 1 1 DNA polymerase beta thumb HHH_8 PF14716.1 gi|433591283|ref|YP_007280779.1| - 1.1e-19 70.3 4.2 8.7e-16 57.8 0.1 3.7 2 1 1 3 3 3 2 Helix-hairpin-helix domain HHH_5 PF14520.1 gi|433591283|ref|YP_007280779.1| - 1.2e-16 60.6 4.8 7.9e-12 45.1 1.1 3.3 2 0 0 2 2 2 2 Helix-hairpin-helix domain PHP PF02811.14 gi|433591283|ref|YP_007280779.1| - 7.2e-15 55.2 0.0 1.3e-14 54.3 0.0 1.4 1 0 0 1 1 1 1 PHP domain HHH_2 PF12826.2 gi|433591283|ref|YP_007280779.1| - 9.9e-08 31.7 2.6 0.0068 16.2 0.0 3.5 3 0 0 3 3 3 2 Helix-hairpin-helix motif DNA_pol_lambd_f PF10391.4 gi|433591283|ref|YP_007280779.1| - 1.2e-06 27.9 0.0 1.2e-05 24.7 0.0 2.7 3 1 1 4 4 4 1 Fingers domain of DNA polymerase lambda HHH PF00633.18 gi|433591283|ref|YP_007280779.1| - 1.5e-05 24.4 0.6 0.0014 18.2 0.1 3.7 3 0 0 3 3 3 1 Helix-hairpin-helix motif DNA_pol_B_palm PF14792.1 gi|433591283|ref|YP_007280779.1| - 0.0012 18.8 0.1 0.004 17.2 0.0 1.9 2 0 0 2 2 2 1 DNA polymerase beta palm IMS_HHH PF11798.3 gi|433591283|ref|YP_007280779.1| - 0.0048 16.8 0.0 4.1 7.6 0.0 2.8 2 0 0 2 2 2 2 IMS family HHH motif HHH_3 PF12836.2 gi|433591283|ref|YP_007280779.1| - 0.005 16.7 0.0 2.2 8.2 0.0 3.4 2 1 0 2 2 2 1 Helix-hairpin-helix motif Ribosomal_S13 PF00416.17 gi|433591283|ref|YP_007280779.1| - 0.056 13.9 0.6 8.7 6.8 0.0 3.6 2 1 2 4 4 4 0 Ribosomal protein S13/S18 Cdd1 PF11731.3 gi|433591283|ref|YP_007280779.1| - 0.084 12.8 0.0 0.83 9.6 0.0 2.5 1 1 0 1 1 1 0 Pathogenicity locus Mut7-C PF01927.11 gi|433591284|ref|YP_007280780.1| - 5.3e-36 123.8 0.0 5.9e-36 123.6 0.0 1.0 1 0 0 1 1 1 1 Mut7-C RNAse domain RNA_POL_M_15KD PF02150.11 gi|433591285|ref|YP_007280781.1| - 2.1e-08 33.6 1.5 2.1e-08 33.6 1.0 2.3 3 0 0 3 3 3 1 RNA polymerases M/15 Kd subunit OrfB_Zn_ribbon PF07282.6 gi|433591285|ref|YP_007280781.1| - 0.00021 20.8 5.3 0.0013 18.3 0.7 2.2 2 0 0 2 2 2 1 Putative transposase DNA-binding domain DZR PF12773.2 gi|433591285|ref|YP_007280781.1| - 0.01 15.6 1.1 0.01 15.6 0.8 2.5 2 1 0 2 2 2 0 Double zinc ribbon TFIIS_C PF01096.13 gi|433591285|ref|YP_007280781.1| - 0.039 13.5 0.2 0.039 13.5 0.1 3.7 4 0 0 4 4 4 0 Transcription factor S-II (TFIIS) Prok-RING_1 PF14446.1 gi|433591285|ref|YP_007280781.1| - 0.065 12.9 3.4 0.14 11.8 0.6 2.3 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 PhnA_Zn_Ribbon PF08274.7 gi|433591285|ref|YP_007280781.1| - 0.084 12.6 7.3 0.6 9.9 0.1 3.0 2 2 0 2 2 2 0 PhnA Zinc-Ribbon DUF4379 PF14311.1 gi|433591285|ref|YP_007280781.1| - 0.43 10.4 4.8 2.9 7.7 0.2 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4379) zf-C4pol PF14260.1 gi|433591285|ref|YP_007280781.1| - 0.49 10.4 5.0 0.12 12.4 1.0 1.9 2 1 0 2 2 2 0 C4-type zinc-finger of DNA polymerase delta FdhE PF04216.7 gi|433591285|ref|YP_007280781.1| - 0.93 9.1 5.8 1.7 8.3 4.0 1.6 1 1 0 1 1 1 0 Protein involved in formate dehydrogenase formation DUF2318 PF10080.4 gi|433591285|ref|YP_007280781.1| - 1.1 9.1 4.2 2.4 7.9 0.6 2.3 2 1 0 2 2 2 0 Predicted membrane protein (DUF2318) DUF2387 PF09526.5 gi|433591285|ref|YP_007280781.1| - 1.2 9.1 6.3 5.4 7.0 0.2 2.4 2 1 0 2 2 2 0 Probable metal-binding protein (DUF2387) IBR PF01485.16 gi|433591285|ref|YP_007280781.1| - 3.1 7.7 11.6 0.56 10.1 1.3 2.8 2 2 0 2 2 2 0 IBR domain C1_1 PF00130.17 gi|433591285|ref|YP_007280781.1| - 3.2 7.5 5.9 1.9 8.2 1.8 2.0 2 0 0 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-IS66 PF13005.2 gi|433591285|ref|YP_007280781.1| - 4.6 7.2 9.7 11 6.1 1.9 3.1 2 1 1 3 3 3 0 zinc-finger binding domain of transposase IS66 PHD PF00628.24 gi|433591285|ref|YP_007280781.1| - 8.9 6.1 12.8 38 4.0 4.1 3.3 2 2 0 2 2 2 0 PHD-finger MR_MLE_C PF13378.1 gi|433591286|ref|YP_007280782.1| - 8.7e-30 102.9 0.0 9.7e-29 99.5 0.0 2.3 2 0 0 2 2 2 1 Enolase C-terminal domain-like MR_MLE PF01188.16 gi|433591286|ref|YP_007280782.1| - 7.3e-16 58.4 1.6 7.3e-16 58.4 1.1 2.5 3 0 0 3 3 3 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain MR_MLE_N PF02746.11 gi|433591286|ref|YP_007280782.1| - 1.7e-14 53.8 0.1 4.9e-14 52.3 0.1 1.7 1 1 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BMFP PF04380.8 gi|433591286|ref|YP_007280782.1| - 0.045 13.8 0.1 0.11 12.6 0.1 1.6 1 0 0 1 1 1 0 Membrane fusogenic activity PHP_C PF13263.1 gi|433591287|ref|YP_007280783.1| - 4.2e-14 51.7 0.0 9.6e-14 50.6 0.0 1.6 1 0 0 1 1 1 1 PHP-associated zf-C2H2 PF00096.21 gi|433591288|ref|YP_007280784.1| - 0.003 17.7 0.0 3.2 8.2 0.0 2.3 2 0 0 2 2 2 2 Zinc finger, C2H2 type DUF4594 PF15266.1 gi|433591288|ref|YP_007280784.1| - 0.024 14.7 0.0 0.028 14.5 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4594) DUF349 PF03993.7 gi|433591288|ref|YP_007280784.1| - 0.025 14.7 0.3 0.042 14.0 0.2 1.3 1 0 0 1 1 1 0 Domain of Unknown Function (DUF349) Herpes_UL47 PF03362.8 gi|433591288|ref|YP_007280784.1| - 0.037 12.3 0.6 0.041 12.2 0.4 1.0 1 0 0 1 1 1 0 Herpesvirus UL47 protein zf-C2H2_4 PF13894.1 gi|433591288|ref|YP_007280784.1| - 0.067 13.5 0.0 3 8.3 0.0 2.4 2 0 0 2 2 2 0 C2H2-type zinc finger TF_Zn_Ribbon PF08271.7 gi|433591288|ref|YP_007280784.1| - 0.13 11.6 0.7 2.9 7.2 0.0 2.5 2 0 0 2 2 2 0 TFIIB zinc-binding DUF900 PF05990.7 gi|433591289|ref|YP_007280785.1| - 1.5e-08 34.2 0.0 2.5e-08 33.5 0.0 1.4 1 1 0 1 1 1 1 Alpha/beta hydrolase of unknown function (DUF900) Abhydrolase_6 PF12697.2 gi|433591289|ref|YP_007280785.1| - 0.00018 21.4 0.8 0.00022 21.1 0.5 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family PGAP1 PF07819.8 gi|433591289|ref|YP_007280785.1| - 0.00042 19.9 0.0 0.00087 18.9 0.0 1.4 2 0 0 2 2 2 1 PGAP1-like protein Abhydrolase_5 PF12695.2 gi|433591289|ref|YP_007280785.1| - 0.0016 18.2 0.5 0.0024 17.6 0.3 1.4 1 0 0 1 1 1 1 Alpha/beta hydrolase family Cutinase PF01083.17 gi|433591289|ref|YP_007280785.1| - 0.0029 17.3 0.1 0.007 16.1 0.1 1.6 1 1 0 1 1 1 1 Cutinase Lipase_3 PF01764.20 gi|433591289|ref|YP_007280785.1| - 0.013 15.0 0.0 0.019 14.5 0.0 1.3 1 0 0 1 1 1 0 Lipase (class 3) SBP_bac_5 PF00496.17 gi|433591289|ref|YP_007280785.1| - 0.031 13.1 0.4 0.048 12.4 0.3 1.2 1 0 0 1 1 1 0 Bacterial extracellular solute-binding proteins, family 5 Middle DUF676 PF05057.9 gi|433591289|ref|YP_007280785.1| - 0.09 12.0 0.0 0.15 11.2 0.0 1.4 1 1 0 1 1 1 0 Putative serine esterase (DUF676) Spt5-NGN PF03439.8 gi|433591290|ref|YP_007280786.1| - 8.4e-24 83.1 0.1 1.3e-23 82.4 0.0 1.3 1 0 0 1 1 1 1 Early transcription elongation factor of RNA pol II, NGN section KOW PF00467.24 gi|433591290|ref|YP_007280786.1| - 1.9e-07 30.5 0.6 4.6e-07 29.3 0.1 1.9 2 0 0 2 2 2 1 KOW motif NusG PF02357.14 gi|433591290|ref|YP_007280786.1| - 0.092 12.9 0.0 1.5 9.1 0.0 2.2 1 1 0 1 1 1 0 Transcription termination factor nusG SecE PF00584.15 gi|433591291|ref|YP_007280787.1| - 0.032 13.7 0.5 0.04 13.4 0.3 1.1 1 0 0 1 1 1 0 SecE/Sec61-gamma subunits of protein translocation complex CbtB PF09489.5 gi|433591291|ref|YP_007280787.1| - 0.3 11.0 2.1 0.31 10.9 0.6 1.6 1 1 1 2 2 2 0 Probable cobalt transporter subunit (CbtB) YrhK PF14145.1 gi|433591291|ref|YP_007280787.1| - 1.8 8.3 5.1 19 5.0 3.5 2.0 1 1 0 1 1 1 0 YrhK-like protein DUF3899 PF13038.1 gi|433591291|ref|YP_007280787.1| - 4.6 7.4 6.6 6.4 6.9 4.6 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3899) Trypsin_2 PF13365.1 gi|433591293|ref|YP_007280789.1| - 5.1e-20 71.6 0.2 8.9e-20 70.8 0.1 1.4 1 0 0 1 1 1 1 Trypsin-like peptidase domain PDZ_2 PF13180.1 gi|433591293|ref|YP_007280789.1| - 1.4e-15 56.8 0.1 2.6e-15 56.0 0.0 1.4 1 0 0 1 1 1 1 PDZ domain Trypsin PF00089.21 gi|433591293|ref|YP_007280789.1| - 2.8e-11 43.4 0.0 5.3e-11 42.5 0.0 1.4 1 0 0 1 1 1 1 Trypsin PDZ PF00595.19 gi|433591293|ref|YP_007280789.1| - 0.0097 16.0 0.2 0.045 13.9 0.2 2.1 1 1 0 1 1 1 1 PDZ domain (Also known as DHR or GLGF) Peptidase_S46 PF10459.4 gi|433591293|ref|YP_007280789.1| - 0.63 8.3 3.0 1.7 6.9 0.3 2.0 2 0 0 2 2 2 0 Peptidase S46 MR_MLE_C PF13378.1 gi|433591294|ref|YP_007280790.1| - 3.7e-29 100.9 0.1 9.2e-29 99.6 0.1 1.7 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE PF01188.16 gi|433591294|ref|YP_007280790.1| - 5e-15 55.7 0.3 3.4e-13 49.8 0.0 3.4 3 0 0 3 3 3 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain MR_MLE_N PF02746.11 gi|433591294|ref|YP_007280790.1| - 1.8e-13 50.4 0.0 4e-13 49.3 0.0 1.5 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain DBI_PRT PF02277.12 gi|433591295|ref|YP_007280791.1| - 0.00071 18.7 0.1 0.00099 18.2 0.1 1.1 1 0 0 1 1 1 1 Phosphoribosyltransferase DUF4441 PF14536.1 gi|433591295|ref|YP_007280791.1| - 0.034 14.1 0.3 0.054 13.4 0.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4441) DrrA_P4M PF14860.1 gi|433591295|ref|YP_007280791.1| - 0.042 13.6 0.2 0.067 12.9 0.2 1.4 1 0 0 1 1 1 0 DrrA phosphatidylinositol 4-phosphate binding domain tRNA_SAD PF07973.9 gi|433591296|ref|YP_007280792.1| - 2.8e-11 43.1 0.1 4.7e-11 42.4 0.0 1.4 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain tRNA-synt_2c PF01411.14 gi|433591296|ref|YP_007280792.1| - 4.7e-05 21.8 0.0 6.4e-05 21.4 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (A) HTH_31 PF13560.1 gi|433591297|ref|YP_007280793.1| - 0.00076 19.6 2.4 0.0013 18.8 1.6 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.17 gi|433591297|ref|YP_007280793.1| - 0.019 14.7 1.4 0.037 13.8 1.0 1.5 1 1 0 1 1 1 0 Helix-turn-helix HTH_19 PF12844.2 gi|433591297|ref|YP_007280793.1| - 0.032 14.2 0.0 0.048 13.7 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_25 PF13413.1 gi|433591297|ref|YP_007280793.1| - 0.094 12.3 0.6 0.17 11.5 0.4 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain PhnA_Zn_Ribbon PF08274.7 gi|433591297|ref|YP_007280793.1| - 0.38 10.5 2.6 1.2 9.0 1.8 1.7 1 1 0 1 1 1 0 PhnA Zinc-Ribbon DnaJ PF00226.26 gi|433591298|ref|YP_007280794.1| - 1.7e-21 75.6 1.3 2.6e-21 75.0 0.9 1.3 1 0 0 1 1 1 1 DnaJ domain Macoilin PF09726.4 gi|433591298|ref|YP_007280794.1| - 3.3 5.8 5.3 3.9 5.6 3.7 1.1 1 0 0 1 1 1 0 Transmembrane protein IMS PF00817.15 gi|433591299|ref|YP_007280795.1| - 1.4e-36 125.5 0.2 2.4e-36 124.7 0.1 1.4 1 0 0 1 1 1 1 impB/mucB/samB family IMS_C PF11799.3 gi|433591299|ref|YP_007280795.1| - 3.6e-15 56.0 0.0 1.4e-14 54.0 0.0 2.0 2 1 0 2 2 2 1 impB/mucB/samB family C-terminal domain IMS_HHH PF11798.3 gi|433591299|ref|YP_007280795.1| - 6.8e-06 25.8 0.0 1.4e-05 24.8 0.0 1.5 1 0 0 1 1 1 1 IMS family HHH motif HHH_5 PF14520.1 gi|433591299|ref|YP_007280795.1| - 0.0011 19.1 0.0 0.0043 17.1 0.0 2.1 1 0 0 1 1 1 1 Helix-hairpin-helix domain DNA_pol_lambd_f PF10391.4 gi|433591299|ref|YP_007280795.1| - 0.0057 16.1 0.0 0.011 15.2 0.0 1.4 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda Cdd1 PF11731.3 gi|433591299|ref|YP_007280795.1| - 0.031 14.1 0.0 0.069 13.0 0.0 1.6 1 0 0 1 1 1 0 Pathogenicity locus Acetyltransf_4 PF13420.1 gi|433591300|ref|YP_007280796.1| - 3.4e-12 46.5 0.0 1.1e-11 44.9 0.0 1.7 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|433591300|ref|YP_007280796.1| - 3.2e-11 43.1 0.2 9.2e-11 41.6 0.1 1.8 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|433591300|ref|YP_007280796.1| - 4.8e-09 36.3 0.1 3.2e-07 30.4 0.0 2.1 1 1 1 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|433591300|ref|YP_007280796.1| - 3.2e-06 27.1 0.0 5.4e-06 26.4 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.1 gi|433591300|ref|YP_007280796.1| - 0.00014 21.8 1.5 0.00014 21.8 1.0 1.8 2 1 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|433591300|ref|YP_007280796.1| - 0.00082 19.2 0.1 0.0017 18.1 0.0 1.6 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_3 PF13302.1 gi|433591300|ref|YP_007280796.1| - 0.00087 19.4 0.0 0.0013 18.9 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|433591300|ref|YP_007280796.1| - 0.001 18.9 0.7 0.005 16.6 0.2 2.2 2 1 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|433591300|ref|YP_007280796.1| - 0.064 13.1 0.1 0.23 11.3 0.0 1.9 1 1 1 2 2 2 0 Acetyltransferase (GNAT) domain Autoind_synth PF00765.12 gi|433591300|ref|YP_007280796.1| - 0.093 11.9 0.0 1.2 8.3 0.0 2.2 2 0 0 2 2 2 0 Autoinducer synthetase TFIIS_C PF01096.13 gi|433591301|ref|YP_007280797.1| - 6.2e-17 60.9 2.5 6.2e-17 60.9 1.7 2.5 3 0 0 3 3 3 1 Transcription factor S-II (TFIIS) DZR PF12773.2 gi|433591301|ref|YP_007280797.1| - 3.2e-05 23.6 7.2 0.039 13.7 0.8 2.4 2 0 0 2 2 2 2 Double zinc ribbon RNA_POL_M_15KD PF02150.11 gi|433591301|ref|YP_007280797.1| - 5.8e-05 22.6 11.5 0.00015 21.3 1.2 3.3 3 0 0 3 3 3 1 RNA polymerases M/15 Kd subunit OrfB_Zn_ribbon PF07282.6 gi|433591301|ref|YP_007280797.1| - 0.0032 17.0 13.1 0.1 12.2 2.7 2.8 2 1 1 3 3 3 2 Putative transposase DNA-binding domain Zn_Tnp_IS1595 PF12760.2 gi|433591301|ref|YP_007280797.1| - 0.0059 16.3 0.5 0.0059 16.3 0.3 2.4 2 1 0 2 2 2 1 Transposase zinc-ribbon domain Prok-RING_1 PF14446.1 gi|433591301|ref|YP_007280797.1| - 0.0081 15.8 9.5 0.18 11.5 0.8 3.2 3 0 0 3 3 3 1 Prokaryotic RING finger family 1 ADK_lid PF05191.9 gi|433591301|ref|YP_007280797.1| - 0.031 13.9 9.4 2.1 8.1 0.1 4.0 4 0 0 4 4 4 0 Adenylate kinase, active site lid SpdB PF05122.8 gi|433591301|ref|YP_007280797.1| - 0.043 13.8 0.3 0.21 11.6 0.0 2.1 2 0 0 2 2 2 0 Mobile element transfer protein Cytochrome_C554 PF13435.1 gi|433591301|ref|YP_007280797.1| - 0.064 13.2 2.5 0.086 12.8 1.7 1.3 1 0 0 1 1 1 0 Cytochrome c554 and c-prime Mcm10 PF09332.6 gi|433591301|ref|YP_007280797.1| - 0.11 11.8 2.5 0.13 11.5 1.7 1.4 1 1 0 1 1 1 0 Mcm10 replication factor Ogr_Delta PF04606.7 gi|433591301|ref|YP_007280797.1| - 0.14 11.8 11.0 2.9 7.6 0.1 4.1 2 2 1 3 3 3 0 Ogr/Delta-like zinc finger zf-piccolo PF05715.8 gi|433591301|ref|YP_007280797.1| - 0.27 11.2 5.6 0.46 10.5 0.0 2.7 2 1 1 3 3 2 0 Piccolo Zn-finger RRN7 PF11781.3 gi|433591301|ref|YP_007280797.1| - 0.27 10.7 14.0 8.3 6.0 0.0 4.0 3 1 1 4 4 4 0 RNA polymerase I-specific transcription initiation factor Rrn7 zf-tcix PF14952.1 gi|433591301|ref|YP_007280797.1| - 0.32 10.3 7.1 0.98 8.8 0.2 3.0 3 0 0 3 3 3 0 Putative treble-clef, zinc-finger, Zn-binding zf-trcl PF13451.1 gi|433591301|ref|YP_007280797.1| - 0.43 10.2 0.1 0.43 10.2 0.1 3.7 4 0 0 4 4 4 0 Probable zinc-binding domain Zn_ribbon_recom PF13408.1 gi|433591301|ref|YP_007280797.1| - 0.46 10.7 5.2 25 5.2 1.4 3.2 3 1 0 3 3 3 0 Recombinase zinc beta ribbon domain GATA PF00320.22 gi|433591301|ref|YP_007280797.1| - 0.49 9.7 5.2 5 6.5 0.1 3.4 3 1 0 3 3 3 0 GATA zinc finger GFA PF04828.9 gi|433591301|ref|YP_007280797.1| - 0.58 10.1 9.0 3.5 7.6 0.3 3.3 1 1 2 3 3 3 0 Glutathione-dependent formaldehyde-activating enzyme zinc_ribbon_2 PF13240.1 gi|433591301|ref|YP_007280797.1| - 0.62 9.6 10.8 4.4 6.9 0.1 3.8 4 0 0 4 4 4 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|433591301|ref|YP_007280797.1| - 0.76 9.1 13.4 3.7 6.9 0.4 4.2 3 2 0 4 4 4 0 TFIIB zinc-binding YhfH PF14149.1 gi|433591301|ref|YP_007280797.1| - 0.92 9.3 10.2 4 7.3 0.0 3.8 3 1 1 4 4 4 0 YhfH-like protein UPF0547 PF10571.4 gi|433591301|ref|YP_007280797.1| - 1.2 8.8 5.7 39 4.0 0.1 3.2 3 0 0 3 3 3 0 Uncharacterised protein family UPF0547 HypA PF01155.14 gi|433591301|ref|YP_007280797.1| - 1.3 8.7 9.2 1.1 8.9 0.7 2.4 1 1 1 2 2 2 0 Hydrogenase expression/synthesis hypA family zinc_ribbon_4 PF13717.1 gi|433591301|ref|YP_007280797.1| - 1.4 8.6 5.7 1.2 8.8 0.2 2.8 3 1 0 3 3 3 0 zinc-ribbon domain DNA_RNApol_7kD PF03604.8 gi|433591301|ref|YP_007280797.1| - 1.7 8.1 11.7 7.8 6.0 0.1 3.8 3 1 0 4 4 4 0 DNA directed RNA polymerase, 7 kDa subunit Nudix_N_2 PF14803.1 gi|433591301|ref|YP_007280797.1| - 3 7.6 13.0 6.2 6.6 1.4 4.2 2 2 2 4 4 4 0 Nudix N-terminal zinc_ribbon_5 PF13719.1 gi|433591301|ref|YP_007280797.1| - 3.8 7.1 6.8 1.3 8.6 0.1 2.8 3 0 0 3 3 3 0 zinc-ribbon domain IBR PF01485.16 gi|433591301|ref|YP_007280797.1| - 5.3 6.9 11.5 5.4e+02 0.5 8.0 3.1 1 1 0 1 1 1 0 IBR domain zf-ribbon_3 PF13248.1 gi|433591301|ref|YP_007280797.1| - 5.8 6.2 11.8 13 5.1 0.1 4.1 4 1 0 4 4 4 0 zinc-ribbon domain Lar_restr_allev PF14354.1 gi|433591301|ref|YP_007280797.1| - 6.4 7.1 16.1 1.5e+04 -4.6 11.1 3.7 1 1 0 1 1 0 0 Restriction alleviation protein Lar zf-RING_5 PF14634.1 gi|433591301|ref|YP_007280797.1| - 7.9 6.2 8.7 25 4.7 0.7 3.0 2 2 0 2 2 2 0 zinc-RING finger domain RHH_1 PF01402.16 gi|433591303|ref|YP_007280799.1| - 0.0074 16.1 0.1 0.01 15.7 0.1 1.2 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family SeqA PF03925.8 gi|433591303|ref|YP_007280799.1| - 0.099 12.3 0.0 0.11 12.2 0.0 1.0 1 0 0 1 1 1 0 SeqA protein KaiC PF06745.8 gi|433591304|ref|YP_007280800.1| - 2.6e-07 30.0 0.0 0.0012 18.0 0.0 2.3 2 0 0 2 2 2 2 KaiC AAA_25 PF13481.1 gi|433591304|ref|YP_007280800.1| - 4.3e-06 26.2 2.8 0.0023 17.3 0.2 2.3 2 0 0 2 2 2 2 AAA domain Rad51 PF08423.6 gi|433591304|ref|YP_007280800.1| - 0.0095 14.8 0.0 0.045 12.6 0.0 1.9 2 0 0 2 2 2 1 Rad51 GHMP_kinases_N PF00288.21 gi|433591305|ref|YP_007280801.1| - 6.2e-06 26.1 0.1 1.8e-05 24.7 0.1 1.9 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|433591305|ref|YP_007280801.1| - 0.0014 18.7 0.2 0.0029 17.7 0.2 1.5 1 0 0 1 1 1 1 GHMP kinases C terminal ILVD_EDD PF00920.16 gi|433591307|ref|YP_007280803.1| - 1.3e-202 673.9 6.3 1.5e-202 673.7 4.4 1.0 1 0 0 1 1 1 1 Dehydratase family STAT1_TAZ2bind PF12162.3 gi|433591307|ref|YP_007280803.1| - 0.056 12.8 2.1 0.12 11.7 1.4 1.6 1 0 0 1 1 1 0 STAT1 TAZ2 binding domain P3A PF08727.6 gi|433591308|ref|YP_007280804.1| - 0.037 13.3 0.1 0.063 12.6 0.1 1.4 1 0 0 1 1 1 0 Poliovirus 3A protein like CTP_transf_2 PF01467.21 gi|433591309|ref|YP_007280805.1| - 4.6e-13 49.5 0.4 9.2e-13 48.5 0.3 1.5 1 1 0 1 1 1 1 Cytidylyltransferase FAD_syn PF06574.7 gi|433591309|ref|YP_007280805.1| - 0.056 13.0 0.1 0.16 11.6 0.0 1.7 2 0 0 2 2 2 0 FAD synthetase RC-P840_PscD PF10657.4 gi|433591309|ref|YP_007280805.1| - 0.12 12.1 0.0 0.23 11.3 0.0 1.3 1 1 0 1 1 1 0 Photosystem P840 reaction centre protein PscD Prok-JAB PF14464.1 gi|433591310|ref|YP_007280806.1| - 1.8e-12 46.7 0.0 2.3e-12 46.4 0.0 1.1 1 0 0 1 1 1 1 Prokaryotic homologs of the JAB domain JAB PF01398.16 gi|433591310|ref|YP_007280806.1| - 0.00027 20.6 0.0 0.00086 19.0 0.0 1.7 1 1 0 1 1 1 1 JAB1/Mov34/MPN/PAD-1 ubiquitin protease Toxin-JAB1 PF15659.1 gi|433591310|ref|YP_007280806.1| - 0.029 14.2 0.1 0.043 13.6 0.1 1.2 1 0 0 1 1 1 0 JAB-like toxin 1 RadC PF04002.10 gi|433591310|ref|YP_007280806.1| - 0.041 13.5 0.0 0.066 12.9 0.0 1.3 1 0 0 1 1 1 0 RadC-like JAB domain PQQ_2 PF13360.1 gi|433591311|ref|YP_007280807.1| - 3e-31 108.7 33.3 3.4e-16 59.4 4.2 3.4 1 1 2 3 3 3 3 PQQ-like domain PQQ_3 PF13570.1 gi|433591311|ref|YP_007280807.1| - 2e-15 56.4 22.0 0.00043 20.4 0.0 7.6 8 0 0 8 8 8 5 PQQ-like domain PQQ PF01011.16 gi|433591311|ref|YP_007280807.1| - 6.5e-07 28.5 13.6 0.0081 15.6 0.0 5.9 6 1 0 7 7 7 2 PQQ enzyme repeat DUF4066 PF13278.1 gi|433591311|ref|YP_007280807.1| - 0.033 13.4 0.2 1.5 8.0 0.1 2.5 2 0 0 2 2 2 0 Putative amidotransferase RHS_repeat PF05593.9 gi|433591311|ref|YP_007280807.1| - 0.055 13.6 0.6 0.35 11.1 0.0 2.8 2 0 0 2 2 2 0 RHS Repeat Gln-synt_C PF00120.19 gi|433591311|ref|YP_007280807.1| - 0.12 11.4 0.0 0.21 10.7 0.0 1.3 1 0 0 1 1 1 0 Glutamine synthetase, catalytic domain PIN PF01850.16 gi|433591312|ref|YP_007280808.1| - 1.9e-07 31.4 2.9 1.6e-06 28.4 2.0 1.9 1 1 0 1 1 1 1 PIN domain DZR PF12773.2 gi|433591312|ref|YP_007280808.1| - 0.065 13.0 1.3 0.11 12.3 0.9 1.3 1 0 0 1 1 1 0 Double zinc ribbon DUF4411 PF14367.1 gi|433591312|ref|YP_007280808.1| - 0.11 12.1 0.1 0.22 11.2 0.0 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4411) Zn-ribbon_8 PF09723.5 gi|433591312|ref|YP_007280808.1| - 0.11 12.4 2.2 3.5 7.6 0.2 2.3 1 1 2 3 3 3 0 Zinc ribbon domain DUF1610 PF07754.6 gi|433591312|ref|YP_007280808.1| - 0.24 11.5 2.2 20 5.4 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) zf-ribbon_3 PF13248.1 gi|433591312|ref|YP_007280808.1| - 0.83 8.9 3.9 2.3 7.5 2.7 1.8 1 1 0 1 1 1 0 zinc-ribbon domain Antitoxin-MazE PF04014.13 gi|433591313|ref|YP_007280809.1| - 1.9e-10 40.2 0.2 2.9e-10 39.6 0.1 1.3 1 0 0 1 1 1 1 Antidote-toxin recognition MazE tRNA_anti-codon PF01336.20 gi|433591314|ref|YP_007280810.1| - 1.2e-10 41.0 0.0 2.4e-10 40.1 0.0 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain DHH PF01368.15 gi|433591314|ref|YP_007280810.1| - 7.8e-10 38.5 0.0 1.3e-09 37.8 0.0 1.3 1 0 0 1 1 1 1 DHH family S1 PF00575.18 gi|433591314|ref|YP_007280810.1| - 0.001 19.1 1.2 0.0022 18.0 0.2 2.1 2 0 0 2 2 2 1 S1 RNA binding domain DUF3168 PF11367.3 gi|433591314|ref|YP_007280810.1| - 0.0086 16.2 0.2 0.11 12.6 0.0 2.7 2 0 0 2 2 2 1 Protein of unknown function (DUF3168) Rib_5-P_isom_A PF06026.9 gi|433591314|ref|YP_007280810.1| - 0.051 12.8 0.0 0.093 12.0 0.0 1.4 1 0 0 1 1 1 0 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) MaoC_dehydrat_N PF13452.1 gi|433591315|ref|YP_007280811.1| - 3.8e-08 33.2 0.1 9e-07 28.7 0.1 2.0 1 1 0 1 1 1 1 N-terminal half of MaoC dehydratase MaoC_dehydratas PF01575.14 gi|433591315|ref|YP_007280811.1| - 3.4e-05 23.2 0.1 0.00039 19.7 0.1 2.1 1 1 0 1 1 1 1 MaoC like domain 4HBT PF03061.17 gi|433591315|ref|YP_007280811.1| - 0.056 13.5 0.0 0.093 12.8 0.0 1.4 1 0 0 1 1 1 0 Thioesterase superfamily Prok-RING_1 PF14446.1 gi|433591316|ref|YP_007280812.1| - 0.0035 17.0 0.4 0.0041 16.8 0.3 1.1 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 Rubredoxin PF00301.15 gi|433591316|ref|YP_007280812.1| - 0.005 16.6 0.5 0.65 9.9 0.0 2.1 2 0 0 2 2 2 1 Rubredoxin zinc-ribbons_6 PF07191.7 gi|433591316|ref|YP_007280812.1| - 0.0077 15.9 0.5 0.0088 15.8 0.3 1.1 1 0 0 1 1 1 1 zinc-ribbons A2L_zn_ribbon PF08792.5 gi|433591316|ref|YP_007280812.1| - 0.0082 15.5 1.5 1.3 8.5 0.1 2.1 2 0 0 2 2 2 2 A2L zinc ribbon domain TF_Zn_Ribbon PF08271.7 gi|433591316|ref|YP_007280812.1| - 0.011 15.0 3.1 0.019 14.2 2.2 1.4 1 1 0 1 1 1 0 TFIIB zinc-binding DZR PF12773.2 gi|433591316|ref|YP_007280812.1| - 0.012 15.3 0.4 0.013 15.3 0.3 1.1 1 0 0 1 1 1 0 Double zinc ribbon PhnA_Zn_Ribbon PF08274.7 gi|433591316|ref|YP_007280812.1| - 0.025 14.3 2.2 0.67 9.7 0.0 2.1 2 0 0 2 2 2 0 PhnA Zinc-Ribbon DUF1272 PF06906.6 gi|433591316|ref|YP_007280812.1| - 0.054 13.3 1.5 0.2 11.5 0.1 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1272) ZZ PF00569.12 gi|433591316|ref|YP_007280812.1| - 0.054 13.0 0.3 0.074 12.6 0.2 1.3 1 0 0 1 1 1 0 Zinc finger, ZZ type zf-Mss51 PF13824.1 gi|433591316|ref|YP_007280812.1| - 0.057 13.2 3.2 0.35 10.7 0.1 2.0 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-C2H2 PF00096.21 gi|433591316|ref|YP_007280812.1| - 0.071 13.4 2.5 3.9 8.0 0.1 2.3 2 0 0 2 2 2 0 Zinc finger, C2H2 type DUF2082 PF09855.4 gi|433591316|ref|YP_007280812.1| - 0.084 12.7 0.7 0.27 11.1 0.0 1.8 2 0 0 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) PHD PF00628.24 gi|433591316|ref|YP_007280812.1| - 0.091 12.4 2.3 5.2 6.8 0.1 2.0 1 1 1 2 2 2 0 PHD-finger Nudix_N_2 PF14803.1 gi|433591316|ref|YP_007280812.1| - 0.1 12.2 2.7 3.1 7.5 1.9 2.4 1 1 0 1 1 1 0 Nudix N-terminal zf-H2C2_2 PF13465.1 gi|433591316|ref|YP_007280812.1| - 0.11 12.8 1.2 7.5 7.0 0.0 2.2 2 0 0 2 2 2 0 Zinc-finger double domain zf-UBR PF02207.15 gi|433591316|ref|YP_007280812.1| - 0.11 12.1 0.2 0.13 11.9 0.1 1.1 1 0 0 1 1 1 0 Putative zinc finger in N-recognin (UBR box) zf-C4_Topoisom PF01396.14 gi|433591316|ref|YP_007280812.1| - 0.27 10.7 2.5 0.38 10.3 0.1 1.9 1 1 1 2 2 2 0 Topoisomerase DNA binding C4 zinc finger UPF0547 PF10571.4 gi|433591316|ref|YP_007280812.1| - 0.41 10.3 4.6 2.7 7.7 3.2 2.0 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 Zn-ribbon_8 PF09723.5 gi|433591316|ref|YP_007280812.1| - 0.76 9.7 4.9 1.9 8.5 0.4 2.1 1 1 1 2 2 2 0 Zinc ribbon domain zf-IS66 PF13005.2 gi|433591316|ref|YP_007280812.1| - 0.82 9.7 5.3 1 9.3 0.3 2.1 1 1 1 2 2 2 0 zinc-finger binding domain of transposase IS66 HhH-GPD PF00730.20 gi|433591318|ref|YP_007280814.1| - 2e-14 53.7 0.0 2.9e-14 53.2 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.18 gi|433591318|ref|YP_007280814.1| - 3.1e-09 36.0 0.0 6.6e-09 34.9 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix motif HemN_C PF06969.11 gi|433591318|ref|YP_007280814.1| - 0.012 15.6 1.7 0.023 14.7 0.3 2.2 3 0 0 3 3 3 0 HemN C-terminal domain HTH_10 PF04967.7 gi|433591319|ref|YP_007280815.1| - 3e-17 61.9 0.0 4.7e-17 61.3 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain MarR_2 PF12802.2 gi|433591319|ref|YP_007280815.1| - 0.00096 18.7 0.0 0.0042 16.7 0.0 2.1 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|433591319|ref|YP_007280815.1| - 0.0057 16.4 0.1 0.015 15.0 0.1 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|433591319|ref|YP_007280815.1| - 0.02 14.2 0.0 0.049 13.0 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding UPF0122 PF04297.9 gi|433591319|ref|YP_007280815.1| - 0.022 14.7 0.1 0.35 10.9 0.0 2.1 1 1 1 2 2 2 0 Putative helix-turn-helix protein, YlxM / p13 like HTH_3 PF01381.17 gi|433591319|ref|YP_007280815.1| - 0.026 14.3 0.0 0.059 13.2 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix HTH_AsnC-type PF13404.1 gi|433591319|ref|YP_007280815.1| - 0.083 12.4 0.2 0.25 10.9 0.1 1.8 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain Mrr_N PF14338.1 gi|433591320|ref|YP_007280816.1| - 0.012 15.6 0.1 0.021 14.9 0.1 1.3 1 0 0 1 1 1 0 Mrr N-terminal domain HTH_IclR PF09339.5 gi|433591320|ref|YP_007280816.1| - 0.16 11.5 1.3 0.42 10.2 0.1 2.2 2 0 0 2 2 2 0 IclR helix-turn-helix domain SprA-related PF12118.3 gi|433591321|ref|YP_007280817.1| - 0.35 10.1 0.1 0.35 10.1 0.0 1.6 2 0 0 2 2 2 0 SprA-related family FA_desaturase PF00487.19 gi|433591321|ref|YP_007280817.1| - 2.5 7.4 6.5 1.8 7.9 0.5 2.0 1 1 1 2 2 2 0 Fatty acid desaturase Acetyltransf_4 PF13420.1 gi|433591322|ref|YP_007280818.1| - 3.9e-18 65.8 0.0 5.3e-18 65.4 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|433591322|ref|YP_007280818.1| - 1.4e-13 50.7 0.0 2.5e-13 49.8 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_3 PF13302.1 gi|433591322|ref|YP_007280818.1| - 4.1e-11 43.2 0.1 6.7e-11 42.5 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|433591322|ref|YP_007280818.1| - 6.7e-08 32.6 0.0 1.1e-07 32.0 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|433591322|ref|YP_007280818.1| - 8.8e-07 28.9 0.0 2.2e-06 27.7 0.0 1.7 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|433591322|ref|YP_007280818.1| - 0.00038 20.3 0.1 0.00061 19.7 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|433591322|ref|YP_007280818.1| - 0.00048 19.9 0.1 0.001 18.8 0.0 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain HTH_20 PF12840.2 gi|433591322|ref|YP_007280818.1| - 0.02 14.6 0.0 0.042 13.6 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Acetyltransf_CG PF14542.1 gi|433591322|ref|YP_007280818.1| - 0.031 14.1 0.0 0.073 12.9 0.0 1.7 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase MMR_HSR1_C PF08438.5 gi|433591323|ref|YP_007280819.1| - 4.1e-31 107.4 0.0 6.6e-31 106.7 0.0 1.3 1 0 0 1 1 1 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.18 gi|433591323|ref|YP_007280819.1| - 7.3e-17 61.3 0.0 1.9e-16 60.0 0.0 1.8 1 1 0 1 1 1 1 50S ribosome-binding GTPase TGS PF02824.16 gi|433591323|ref|YP_007280819.1| - 4.1e-12 45.7 0.0 8.6e-12 44.7 0.0 1.6 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.13 gi|433591323|ref|YP_007280819.1| - 5.9e-10 38.6 0.0 4.7e-07 29.2 0.0 3.2 3 0 0 3 3 3 1 Ferrous iron transport protein B GTP_EFTU PF00009.22 gi|433591323|ref|YP_007280819.1| - 0.015 14.7 0.0 0.52 9.7 0.0 2.8 3 0 0 3 3 3 0 Elongation factor Tu GTP binding domain PhnA_Zn_Ribbon PF08274.7 gi|433591325|ref|YP_007280821.1| - 0.061 13.1 5.7 0.092 12.5 3.9 1.2 1 0 0 1 1 1 0 PhnA Zinc-Ribbon FYVE_2 PF02318.11 gi|433591325|ref|YP_007280821.1| - 0.16 11.9 2.5 0.24 11.2 1.7 1.3 1 1 0 1 1 1 0 FYVE-type zinc finger zf-ribbon_3 PF13248.1 gi|433591325|ref|YP_007280821.1| - 0.69 9.1 5.4 1.4 8.2 3.8 1.5 1 1 0 1 1 1 0 zinc-ribbon domain UbiA PF01040.13 gi|433591326|ref|YP_007280822.1| - 1.8e-10 40.4 23.0 2.7e-10 39.9 15.9 1.3 1 0 0 1 1 1 1 UbiA prenyltransferase family FUSC-like PF12805.2 gi|433591326|ref|YP_007280822.1| - 0.033 13.1 0.2 0.033 13.1 0.1 2.3 2 0 0 2 2 2 0 FUSC-like inner membrane protein yccS TPP_enzyme_N PF02776.13 gi|433591327|ref|YP_007280823.1| - 8.1e-46 155.6 0.0 5.6e-45 152.9 0.0 2.2 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.16 gi|433591327|ref|YP_007280823.1| - 4.6e-24 84.7 0.0 1.1e-23 83.5 0.0 1.7 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.17 gi|433591327|ref|YP_007280823.1| - 4.5e-21 75.0 0.3 1.5e-20 73.3 0.2 1.9 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, central domain HisKA PF00512.20 gi|433591328|ref|YP_007280824.1| - 1.8e-14 53.4 0.1 5.4e-14 51.9 0.1 1.9 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c PF02518.21 gi|433591328|ref|YP_007280824.1| - 1.8e-13 50.1 2.0 5.9e-13 48.5 0.3 2.2 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.5 gi|433591328|ref|YP_007280824.1| - 2e-10 40.6 1.4 2.9e-10 40.1 0.3 1.9 2 0 0 2 2 2 1 PAS fold PAS_9 PF13426.1 gi|433591328|ref|YP_007280824.1| - 1.5e-08 34.8 0.1 2.8e-08 34.0 0.0 1.5 1 0 0 1 1 1 1 PAS domain PAS PF00989.19 gi|433591328|ref|YP_007280824.1| - 6e-08 32.4 0.0 1.3e-07 31.3 0.0 1.6 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.1 gi|433591328|ref|YP_007280824.1| - 0.00018 21.2 0.1 0.00059 19.6 0.1 1.8 1 0 0 1 1 1 1 PAS domain PAS_7 PF12860.2 gi|433591328|ref|YP_007280824.1| - 0.00041 20.3 0.1 0.0012 18.8 0.1 1.8 1 1 0 1 1 1 1 PAS fold HATPase_c_2 PF13581.1 gi|433591328|ref|YP_007280824.1| - 0.00056 19.7 0.1 0.0016 18.2 0.0 1.9 1 1 0 1 1 1 1 Histidine kinase-like ATPase domain TrkH PF02386.11 gi|433591329|ref|YP_007280825.1| - 1.6e-49 168.4 15.3 1.7e-49 168.2 5.3 2.1 2 0 0 2 2 2 2 Cation transport protein Form-deh_trans PF09163.6 gi|433591329|ref|YP_007280825.1| - 0.73 9.3 4.5 0.42 10.1 0.2 2.9 2 0 0 2 2 2 0 Formate dehydrogenase N, transmembrane FAD-oxidase_C PF02913.14 gi|433591331|ref|YP_007280827.1| - 6.3e-54 182.8 0.1 8.7e-54 182.4 0.1 1.2 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.18 gi|433591331|ref|YP_007280827.1| - 2.9e-39 133.7 0.5 4.6e-39 133.0 0.3 1.3 1 0 0 1 1 1 1 FAD binding domain PhoD PF09423.5 gi|433591332|ref|YP_007280828.1| - 2.9e-113 378.8 3.6 3.4e-113 378.5 2.5 1.0 1 0 0 1 1 1 1 PhoD-like phosphatase Metallophos PF00149.23 gi|433591332|ref|YP_007280828.1| - 0.0069 15.7 0.8 0.089 12.1 0.1 2.3 2 0 0 2 2 2 1 Calcineurin-like phosphoesterase DDE_Tnp_1 PF01609.16 gi|433591333|ref|YP_007280829.1| - 3e-20 72.6 0.0 4.1e-20 72.2 0.0 1.1 1 0 0 1 1 1 1 Transposase DDE domain Bac_luciferase PF00296.15 gi|433591334|ref|YP_007280830.1| - 1.7e-58 198.1 6.4 2.2e-58 197.7 4.4 1.0 1 0 0 1 1 1 1 Luciferase-like monooxygenase SnoaL_2 PF12680.2 gi|433591334|ref|YP_007280830.1| - 0.17 12.2 3.9 0.68 10.3 2.4 2.2 2 0 0 2 2 2 0 SnoaL-like domain Mrr_N PF14338.1 gi|433591335|ref|YP_007280831.1| - 0.02 14.9 0.0 0.04 14.0 0.0 1.5 1 1 0 1 1 1 0 Mrr N-terminal domain YfdX PF10938.3 gi|433591335|ref|YP_007280831.1| - 0.028 14.0 0.1 0.047 13.3 0.0 1.3 1 0 0 1 1 1 0 YfdX protein ADH_zinc_N PF00107.21 gi|433591336|ref|YP_007280832.1| - 9.6e-17 60.7 0.4 1.7e-16 59.9 0.3 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.1 gi|433591336|ref|YP_007280832.1| - 3.7e-13 50.4 0.6 3.7e-13 50.4 0.4 1.8 2 1 0 2 2 2 1 Zinc-binding dehydrogenase ADH_N PF08240.7 gi|433591336|ref|YP_007280832.1| - 2.8e-12 46.3 0.1 7.2e-11 41.8 0.0 2.2 1 1 1 2 2 2 1 Alcohol dehydrogenase GroES-like domain DUF2493 PF10686.4 gi|433591336|ref|YP_007280832.1| - 0.073 12.6 1.1 0.16 11.5 0.8 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2493) YbjQ_1 PF01906.12 gi|433591337|ref|YP_007280833.1| - 5.3e-34 116.8 1.4 5.9e-34 116.6 1.0 1.0 1 0 0 1 1 1 1 Putative heavy-metal-binding DUF4156 PF13698.1 gi|433591337|ref|YP_007280833.1| - 0.0098 15.7 0.1 0.02 14.7 0.0 1.5 1 1 0 1 1 1 1 Domain of unknown function (DUF4156) Ribosomal_L13e PF01294.13 gi|433591337|ref|YP_007280833.1| - 0.018 14.4 0.0 0.022 14.2 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L13e Aminotran_1_2 PF00155.16 gi|433591338|ref|YP_007280834.1| - 1.7e-61 208.2 0.0 1.9e-61 208.0 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|433591338|ref|YP_007280834.1| - 6.2e-14 51.8 0.2 1.2e-13 50.8 0.1 1.4 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.16 gi|433591338|ref|YP_007280834.1| - 1.6e-11 43.8 0.0 2.8e-11 43.1 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.15 gi|433591338|ref|YP_007280834.1| - 2.3e-07 29.4 0.0 3e-07 29.0 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.14 gi|433591338|ref|YP_007280834.1| - 1.9e-05 23.5 0.0 2.9e-05 22.9 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V TPP_enzyme_C PF02775.16 gi|433591340|ref|YP_007280836.1| - 3.8e-32 110.9 0.4 5.7e-32 110.4 0.3 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.3 gi|433591340|ref|YP_007280836.1| - 8.3e-16 57.6 0.3 1.9e-15 56.5 0.2 1.6 1 0 0 1 1 1 1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal POR_N PF01855.14 gi|433591341|ref|YP_007280837.1| - 1.2e-58 198.3 0.7 1.8e-58 197.7 0.5 1.3 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.13 gi|433591341|ref|YP_007280837.1| - 4e-44 150.5 0.2 8.9e-44 149.4 0.2 1.6 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_N PF02776.13 gi|433591341|ref|YP_007280837.1| - 1.2e-06 28.1 0.3 2.3e-06 27.2 0.2 1.6 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Transketolase_C PF02780.15 gi|433591341|ref|YP_007280837.1| - 0.0073 16.2 0.0 0.018 14.9 0.0 1.6 1 0 0 1 1 1 1 Transketolase, C-terminal domain FAD_binding_6 PF00970.19 gi|433591342|ref|YP_007280838.1| - 1.2e-13 50.9 0.0 1.7e-13 50.5 0.0 1.2 1 0 0 1 1 1 1 Oxidoreductase FAD-binding domain PALP PF00291.20 gi|433591342|ref|YP_007280838.1| - 0.00027 20.2 0.2 0.00029 20.1 0.1 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Peripla_BP_4 PF13407.1 gi|433591342|ref|YP_007280838.1| - 0.078 12.3 3.5 0.12 11.7 1.6 1.8 1 1 1 2 2 2 0 Periplasmic binding protein domain Glyoxalase_4 PF13669.1 gi|433591344|ref|YP_007280840.1| - 9.8e-19 67.3 0.2 1.2e-18 67.1 0.2 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase PF00903.20 gi|433591344|ref|YP_007280840.1| - 9.6e-14 51.4 0.3 1.1e-13 51.2 0.2 1.0 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_2 PF12681.2 gi|433591344|ref|YP_007280840.1| - 2.3e-09 37.8 0.1 2.6e-09 37.6 0.1 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_3 PF13468.1 gi|433591344|ref|YP_007280840.1| - 3.6e-06 26.9 0.8 4e-06 26.8 0.5 1.2 1 0 0 1 1 1 1 Glyoxalase-like domain NAD_binding_8 PF13450.1 gi|433591344|ref|YP_007280840.1| - 0.12 12.3 0.0 0.3 11.1 0.0 1.7 1 1 0 1 1 1 0 NAD(P)-binding Rossmann-like domain MM_CoA_mutase PF01642.17 gi|433591345|ref|YP_007280841.1| - 2.8e-207 688.9 1.4 3.2e-207 688.7 1.0 1.0 1 0 0 1 1 1 1 Methylmalonyl-CoA mutase DUF1469 PF07332.6 gi|433591347|ref|YP_007280843.1| - 0.22 11.2 1.3 0.28 10.9 0.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) Acetyltransf_1 PF00583.19 gi|433591348|ref|YP_007280844.1| - 1.9e-10 40.6 0.2 3e-10 39.9 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_CG PF14542.1 gi|433591348|ref|YP_007280844.1| - 0.00016 21.4 0.0 0.00032 20.5 0.0 1.5 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_7 PF13508.1 gi|433591348|ref|YP_007280844.1| - 0.001 19.1 0.0 0.0016 18.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|433591348|ref|YP_007280844.1| - 0.0013 18.8 0.0 0.002 18.2 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|433591348|ref|YP_007280844.1| - 0.0027 17.8 0.1 0.0038 17.4 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Peptidase_M48 PF01435.13 gi|433591349|ref|YP_007280845.1| - 6.1e-28 97.9 0.0 1.5e-27 96.6 0.0 1.6 1 1 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.6 gi|433591349|ref|YP_007280845.1| - 5.2e-06 25.6 0.0 1.3e-05 24.3 0.0 1.6 1 1 0 1 1 1 1 BlaR1 peptidase M56 SprT-like PF10263.4 gi|433591349|ref|YP_007280845.1| - 0.014 15.0 0.0 0.02 14.5 0.0 1.2 1 0 0 1 1 1 0 SprT-like family HAD_2 PF13419.1 gi|433591351|ref|YP_007280847.1| - 3.2e-16 60.0 0.0 3.9e-16 59.7 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|433591351|ref|YP_007280847.1| - 1.2e-10 40.8 0.2 2.2e-10 40.1 0.1 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.21 gi|433591351|ref|YP_007280847.1| - 1.7e-06 28.6 0.0 0.0024 18.3 0.0 2.1 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase Put_Phosphatase PF06888.7 gi|433591351|ref|YP_007280847.1| - 0.12 11.4 0.0 3.8 6.6 0.0 2.7 1 1 1 2 2 2 0 Putative Phosphatase AFOR_C PF01314.13 gi|433591352|ref|YP_007280848.1| - 1.5e-76 257.5 1.9 6.8e-76 255.4 1.3 1.9 1 1 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.10 gi|433591352|ref|YP_007280848.1| - 5.8e-48 162.9 0.0 9.4e-48 162.2 0.0 1.2 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain ThiS PF02597.15 gi|433591353|ref|YP_007280849.1| - 5.2e-09 36.4 0.1 7e-09 35.9 0.1 1.2 1 0 0 1 1 1 1 ThiS family MFS_1 PF07690.11 gi|433591354|ref|YP_007280850.1| - 5.9e-45 153.5 53.9 1.4e-40 139.1 24.6 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.2 gi|433591354|ref|YP_007280850.1| - 0.018 14.8 2.9 1 9.1 0.0 3.3 3 0 0 3 3 3 0 MFS_1 like family DAO PF01266.19 gi|433591355|ref|YP_007280851.1| - 3e-45 154.6 4.1 3.8e-45 154.3 2.9 1.1 1 0 0 1 1 1 1 FAD dependent oxidoreductase Rieske PF00355.21 gi|433591355|ref|YP_007280851.1| - 7.1e-15 54.3 0.2 1.5e-14 53.3 0.2 1.5 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Amino_oxidase PF01593.19 gi|433591355|ref|YP_007280851.1| - 4.2e-07 29.4 0.5 0.0006 18.9 0.1 2.2 2 0 0 2 2 2 2 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.1 gi|433591355|ref|YP_007280851.1| - 1.5e-06 28.1 0.4 8.8e-06 25.6 0.2 2.5 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.19 gi|433591355|ref|YP_007280851.1| - 2.7e-06 26.5 2.3 4.7e-06 25.7 1.6 1.4 1 0 0 1 1 1 1 FAD binding domain FAD_binding_3 PF01494.14 gi|433591355|ref|YP_007280851.1| - 0.00012 21.2 0.1 0.00017 20.7 0.1 1.3 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.9 gi|433591355|ref|YP_007280851.1| - 0.00015 21.7 0.2 0.00027 20.8 0.1 1.6 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|433591355|ref|YP_007280851.1| - 0.00059 20.1 0.3 0.0016 18.8 0.2 1.7 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|433591355|ref|YP_007280851.1| - 0.00082 17.9 0.1 0.0044 15.5 0.2 1.8 2 0 0 2 2 2 1 HI0933-like protein FAD_oxidored PF12831.2 gi|433591355|ref|YP_007280851.1| - 0.0017 17.5 0.3 0.0027 16.8 0.2 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_3 PF13738.1 gi|433591355|ref|YP_007280851.1| - 0.0083 16.2 0.1 0.027 14.5 0.0 1.8 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|433591355|ref|YP_007280851.1| - 0.012 14.7 0.2 0.022 13.8 0.2 1.3 1 0 0 1 1 1 0 Thi4 family NAD_binding_9 PF13454.1 gi|433591355|ref|YP_007280851.1| - 0.057 13.1 0.6 4.4 7.0 0.1 3.0 3 0 0 3 3 3 0 FAD-NAD(P)-binding Lycopene_cycl PF05834.7 gi|433591355|ref|YP_007280851.1| - 0.07 12.0 0.2 0.12 11.3 0.1 1.3 1 0 0 1 1 1 0 Lycopene cyclase protein GIDA PF01134.17 gi|433591355|ref|YP_007280851.1| - 0.095 11.5 0.9 0.16 10.8 0.7 1.3 1 0 0 1 1 1 0 Glucose inhibited division protein A AMP-binding PF00501.23 gi|433591356|ref|YP_007280852.1| - 0.00023 19.6 0.0 0.0055 15.1 0.0 2.0 2 0 0 2 2 2 2 AMP-binding enzyme DJ-1_PfpI PF01965.19 gi|433591357|ref|YP_007280853.1| - 1.6e-35 121.7 0.0 1.9e-35 121.4 0.0 1.1 1 0 0 1 1 1 1 DJ-1/PfpI family DUF4066 PF13278.1 gi|433591357|ref|YP_007280853.1| - 6.7e-13 48.2 0.0 1.1e-12 47.5 0.0 1.3 1 1 0 1 1 1 1 Putative amidotransferase GATase PF00117.23 gi|433591357|ref|YP_007280853.1| - 0.00083 18.8 0.0 0.0011 18.4 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.9 gi|433591357|ref|YP_007280853.1| - 0.00088 18.8 0.0 0.004 16.7 0.0 1.9 2 0 0 2 2 2 1 CobB/CobQ-like glutamine amidotransferase domain SnoaL_3 PF13474.1 gi|433591357|ref|YP_007280853.1| - 0.082 12.9 0.0 0.15 12.0 0.0 1.5 1 0 0 1 1 1 0 SnoaL-like domain Peptidase_C26 PF07722.8 gi|433591357|ref|YP_007280853.1| - 0.13 11.6 0.0 0.24 10.8 0.0 1.4 1 0 0 1 1 1 0 Peptidase C26 CTDII PF01556.13 gi|433591358|ref|YP_007280854.1| - 3e-34 116.7 0.0 4.6e-23 80.9 0.0 3.5 3 0 0 3 3 3 2 DnaJ C terminal domain DnaJ PF00226.26 gi|433591358|ref|YP_007280854.1| - 4.7e-25 87.1 2.5 4.7e-25 87.1 1.8 1.7 2 0 0 2 2 2 1 DnaJ domain DnaJ_CXXCXGXG PF00684.14 gi|433591358|ref|YP_007280854.1| - 4.6e-15 55.4 16.6 8.3e-15 54.5 11.5 1.5 1 0 0 1 1 1 1 DnaJ central domain DUF2318 PF10080.4 gi|433591358|ref|YP_007280854.1| - 0.36 10.6 5.5 0.93 9.2 0.6 2.4 1 1 1 2 2 2 0 Predicted membrane protein (DUF2318) DZR PF12773.2 gi|433591358|ref|YP_007280854.1| - 1.1 9.1 11.9 2.9 7.7 8.3 1.7 1 1 0 1 1 1 0 Double zinc ribbon Antiterm PF03589.8 gi|433591358|ref|YP_007280854.1| - 1.2 9.2 7.7 2.5 8.2 1.6 3.0 1 1 1 2 2 2 0 Antitermination protein A2L_zn_ribbon PF08792.5 gi|433591358|ref|YP_007280854.1| - 6 6.4 6.5 2.7 7.5 0.3 2.6 2 1 0 2 2 2 0 A2L zinc ribbon domain UPF0254 PF06787.6 gi|433591359|ref|YP_007280855.1| - 0.014 14.9 0.5 0.052 13.0 0.0 2.0 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0254) TAA-Trp-ring PF15401.1 gi|433591359|ref|YP_007280855.1| - 0.036 14.2 0.2 0.07 13.3 0.1 1.5 1 0 0 1 1 1 0 Tryptophan-ring motif of head of Trimeric autotransporter adhesin BACON PF13004.2 gi|433591359|ref|YP_007280855.1| - 0.17 12.1 3.5 0.16 12.2 0.3 2.4 1 1 1 2 2 2 0 Bacteroidetes-Associated Carbohydrate-binding Often N-terminal HSP70 PF00012.15 gi|433591360|ref|YP_007280856.1| - 4.2e-242 804.3 17.4 6.8e-240 797.0 12.1 2.0 1 1 0 1 1 1 1 Hsp70 protein MreB_Mbl PF06723.8 gi|433591360|ref|YP_007280856.1| - 1.6e-18 66.3 0.2 1.6e-18 66.3 0.2 2.0 2 0 0 2 2 2 1 MreB/Mbl protein StbA PF06406.6 gi|433591360|ref|YP_007280856.1| - 0.0019 17.2 0.0 0.009 14.9 0.0 2.1 2 0 0 2 2 2 1 StbA protein FtsA PF14450.1 gi|433591360|ref|YP_007280856.1| - 0.042 13.6 0.2 2.8 7.7 0.2 3.5 1 1 0 1 1 1 0 Cell division protein FtsA Hydantoinase_A PF01968.13 gi|433591360|ref|YP_007280856.1| - 0.065 12.3 7.1 0.15 11.1 0.0 3.7 4 0 0 4 4 4 0 Hydantoinase/oxoprolinase Arc_PepC PF06819.6 gi|433591360|ref|YP_007280856.1| - 0.92 9.4 5.9 1.6 8.6 0.4 3.3 3 1 1 4 4 4 0 Archaeal Peptidase A24 C-terminal Domain zf-C4H2 PF10146.4 gi|433591360|ref|YP_007280856.1| - 1 9.3 6.6 0.24 11.3 1.6 2.1 2 0 0 2 2 2 0 Zinc finger-containing protein GrpE PF01025.14 gi|433591361|ref|YP_007280857.1| - 4e-45 153.3 10.5 4e-45 153.3 7.3 2.5 1 1 1 2 2 2 1 GrpE TMCO5 PF14992.1 gi|433591361|ref|YP_007280857.1| - 3.6e-05 23.0 18.2 4.9e-05 22.6 12.6 1.2 1 0 0 1 1 1 1 TMCO5 family Med9 PF07544.8 gi|433591361|ref|YP_007280857.1| - 4.9e-05 22.9 13.7 0.0015 18.1 1.0 3.4 2 1 1 3 3 3 2 RNA polymerase II transcription mediator complex subunit 9 DUF948 PF06103.6 gi|433591361|ref|YP_007280857.1| - 0.00045 20.0 5.1 0.072 12.9 0.4 2.7 2 1 1 3 3 3 2 Bacterial protein of unknown function (DUF948) IFT57 PF10498.4 gi|433591361|ref|YP_007280857.1| - 0.00048 18.9 8.4 0.00048 18.9 5.9 3.2 2 1 2 4 4 3 1 Intra-flagellar transport protein 57 ERM PF00769.14 gi|433591361|ref|YP_007280857.1| - 0.0017 17.9 22.1 0.0017 17.9 15.3 2.2 1 1 1 2 2 1 1 Ezrin/radixin/moesin family AAA_13 PF13166.1 gi|433591361|ref|YP_007280857.1| - 0.002 16.6 10.7 0.0027 16.2 7.4 1.2 1 0 0 1 1 1 1 AAA domain Spc7 PF08317.6 gi|433591361|ref|YP_007280857.1| - 0.0025 16.5 12.9 0.0025 16.5 9.0 1.5 1 1 0 1 1 1 1 Spc7 kinetochore protein SNARE PF05739.14 gi|433591361|ref|YP_007280857.1| - 0.0057 16.3 4.4 0.0057 16.3 3.1 3.0 2 2 1 4 4 3 1 SNARE domain Cast PF10174.4 gi|433591361|ref|YP_007280857.1| - 0.0059 14.7 27.7 0.0078 14.3 19.2 1.1 1 0 0 1 1 1 1 RIM-binding protein of the cytomatrix active zone Reo_sigmaC PF04582.7 gi|433591361|ref|YP_007280857.1| - 0.006 15.7 1.2 0.013 14.7 0.2 1.7 1 1 0 1 1 1 1 Reovirus sigma C capsid protein Baculo_PEP_C PF04513.7 gi|433591361|ref|YP_007280857.1| - 0.027 14.2 5.0 0.28 11.0 1.8 2.8 1 1 1 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF3407 PF11887.3 gi|433591361|ref|YP_007280857.1| - 0.034 13.4 0.6 0.059 12.6 0.4 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3407) Lebercilin PF15619.1 gi|433591361|ref|YP_007280857.1| - 0.074 12.4 22.4 0.25 10.7 0.7 2.4 1 1 1 2 2 2 0 Ciliary protein causing Leber congenital amaurosis disease PilJ PF13675.1 gi|433591361|ref|YP_007280857.1| - 0.074 13.3 12.0 0.72 10.1 3.4 3.1 1 1 2 3 3 3 0 Type IV pili methyl-accepting chemotaxis transducer N-term IncA PF04156.9 gi|433591361|ref|YP_007280857.1| - 0.081 12.5 25.5 0.52 9.8 17.6 2.1 1 1 0 1 1 1 0 IncA protein EzrA PF06160.7 gi|433591361|ref|YP_007280857.1| - 0.083 11.0 17.4 0.39 8.8 12.1 2.0 1 1 0 1 1 1 0 Septation ring formation regulator, EzrA NPV_P10 PF05531.7 gi|433591361|ref|YP_007280857.1| - 0.1 12.8 11.0 2 8.7 0.1 3.3 1 1 2 3 3 3 0 Nucleopolyhedrovirus P10 protein DUF745 PF05335.8 gi|433591361|ref|YP_007280857.1| - 0.13 11.8 8.8 0.057 12.9 4.2 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF745) Cluap1 PF10234.4 gi|433591361|ref|YP_007280857.1| - 0.16 11.1 14.8 0.078 12.1 8.2 1.8 1 1 1 2 2 2 0 Clusterin-associated protein-1 Atg14 PF10186.4 gi|433591361|ref|YP_007280857.1| - 0.18 10.7 17.1 0.33 9.8 11.8 1.5 1 1 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 DUF3584 PF12128.3 gi|433591361|ref|YP_007280857.1| - 0.18 9.0 22.1 0.24 8.6 15.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) Het-C PF07217.6 gi|433591361|ref|YP_007280857.1| - 0.22 9.7 7.4 0.63 8.1 0.1 2.1 1 1 1 2 2 2 0 Heterokaryon incompatibility protein Het-C Bacillus_HBL PF05791.6 gi|433591361|ref|YP_007280857.1| - 0.22 10.8 10.5 6 6.2 7.2 2.6 1 1 0 1 1 1 0 Bacillus haemolytic enterotoxin (HBL) TBPIP PF07106.8 gi|433591361|ref|YP_007280857.1| - 0.24 10.9 17.7 0.13 11.7 7.8 2.2 1 1 1 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) DUF972 PF06156.8 gi|433591361|ref|YP_007280857.1| - 0.25 11.6 14.2 0.37 11.1 5.7 3.1 1 1 2 3 3 3 0 Protein of unknown function (DUF972) SlyX PF04102.7 gi|433591361|ref|YP_007280857.1| - 0.28 11.5 14.1 0.035 14.4 4.5 3.2 1 1 2 3 3 3 0 SlyX Mnd1 PF03962.10 gi|433591361|ref|YP_007280857.1| - 0.3 10.7 20.3 0.059 13.0 7.7 2.2 1 1 1 2 2 2 0 Mnd1 family CENP-F_leu_zip PF10473.4 gi|433591361|ref|YP_007280857.1| - 0.52 10.1 25.1 0.68 9.7 10.8 2.2 1 1 1 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF3508 PF12018.3 gi|433591361|ref|YP_007280857.1| - 0.58 9.0 5.4 0.26 10.2 1.7 1.8 1 1 1 2 2 2 0 Domain of unknown function (DUF3508) Syntaxin-6_N PF09177.6 gi|433591361|ref|YP_007280857.1| - 0.66 10.4 15.1 0.15 12.5 3.7 2.6 1 1 1 2 2 2 0 Syntaxin 6, N-terminal APG6 PF04111.7 gi|433591361|ref|YP_007280857.1| - 0.7 8.8 21.7 0.14 11.1 11.4 1.9 1 1 1 2 2 2 0 Autophagy protein Apg6 Laminin_II PF06009.7 gi|433591361|ref|YP_007280857.1| - 0.7 9.6 11.6 0.39 10.4 1.2 2.7 1 1 2 3 3 3 0 Laminin Domain II Fib_alpha PF08702.5 gi|433591361|ref|YP_007280857.1| - 0.81 9.7 12.4 1.6 8.8 0.6 2.4 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family FlaC_arch PF05377.6 gi|433591361|ref|YP_007280857.1| - 0.88 9.5 13.1 4.4 7.2 0.5 3.5 2 1 1 3 3 3 0 Flagella accessory protein C (FlaC) GAS PF13851.1 gi|433591361|ref|YP_007280857.1| - 0.91 8.6 19.5 2 7.5 13.0 1.7 1 1 0 1 1 1 0 Growth-arrest specific micro-tubule binding ADIP PF11559.3 gi|433591361|ref|YP_007280857.1| - 0.94 9.3 17.5 0.87 9.4 10.8 1.9 1 1 0 1 1 1 0 Afadin- and alpha -actinin-Binding ATG16 PF08614.6 gi|433591361|ref|YP_007280857.1| - 0.97 9.2 23.1 0.055 13.3 5.0 2.6 1 1 1 2 2 2 0 Autophagy protein 16 (ATG16) TPR_MLP1_2 PF07926.7 gi|433591361|ref|YP_007280857.1| - 1.5 8.5 20.3 0.58 9.9 7.2 2.6 1 1 1 2 2 2 0 TPR/MLP1/MLP2-like protein IZUMO PF15005.1 gi|433591361|ref|YP_007280857.1| - 1.5 8.8 4.4 4.6 7.2 2.6 1.9 1 1 1 2 2 2 0 Izumo sperm-egg fusion HXXSHH PF07586.6 gi|433591361|ref|YP_007280857.1| - 1.6 7.5 8.3 2.6 6.8 5.4 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1552) Mod_r PF07200.8 gi|433591361|ref|YP_007280857.1| - 1.6 8.5 18.2 1.8 8.5 10.5 2.1 1 1 1 2 2 2 0 Modifier of rudimentary (Mod(r)) protein Prefoldin_2 PF01920.15 gi|433591361|ref|YP_007280857.1| - 1.8 8.3 22.7 0.037 13.7 5.1 3.3 2 1 1 3 3 3 0 Prefoldin subunit DivIVA PF05103.8 gi|433591361|ref|YP_007280857.1| - 2.1 8.3 19.0 5.2 7.1 1.5 2.5 1 1 1 2 2 2 0 DivIVA protein DUF342 PF03961.8 gi|433591361|ref|YP_007280857.1| - 2.5 6.4 15.8 0.22 9.9 1.8 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF342) Transposase_22 PF02994.9 gi|433591361|ref|YP_007280857.1| - 2.6 6.4 15.0 3.9 5.8 10.0 1.5 1 1 0 1 1 1 0 L1 transposable element TMF_DNA_bd PF12329.3 gi|433591361|ref|YP_007280857.1| - 2.7 7.8 22.5 0.84 9.4 9.3 3.3 1 1 3 4 4 4 0 TATA element modulatory factor 1 DNA binding OmpH PF03938.9 gi|433591361|ref|YP_007280857.1| - 2.9 7.8 18.8 4.6 7.1 12.3 1.8 1 1 1 2 2 2 0 Outer membrane protein (OmpH-like) Seryl_tRNA_N PF02403.17 gi|433591361|ref|YP_007280857.1| - 3 7.8 18.9 0.88 9.6 3.9 2.7 1 1 1 2 2 2 0 Seryl-tRNA synthetase N-terminal domain Allexi_40kDa PF05549.6 gi|433591361|ref|YP_007280857.1| - 3.1 7.0 5.3 2.6 7.2 2.2 1.7 1 1 1 2 2 2 0 Allexivirus 40kDa protein DUF1664 PF07889.7 gi|433591361|ref|YP_007280857.1| - 4 7.2 10.4 1.4 8.7 2.2 2.6 1 1 2 3 3 3 0 Protein of unknown function (DUF1664) DUF4407 PF14362.1 gi|433591361|ref|YP_007280857.1| - 5.9 5.7 18.0 13 4.5 12.3 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) DUF16 PF01519.11 gi|433591361|ref|YP_007280857.1| - 6 7.1 17.7 0.081 13.1 3.6 2.4 1 1 1 2 2 2 0 Protein of unknown function DUF16 DUF3552 PF12072.3 gi|433591361|ref|YP_007280857.1| - 6.3 5.9 28.2 1.7 7.8 13.8 2.7 1 1 2 3 3 3 0 Domain of unknown function (DUF3552) Bap31 PF05529.7 gi|433591361|ref|YP_007280857.1| - 6.7 6.1 18.1 49 3.3 9.4 3.1 1 1 1 2 2 2 0 B-cell receptor-associated protein 31-like Rho_Binding PF08912.6 gi|433591361|ref|YP_007280857.1| - 8.5 6.7 18.3 19 5.6 3.2 3.4 1 1 2 3 3 3 0 Rho Binding HAUS6_N PF14661.1 gi|433591361|ref|YP_007280857.1| - 8.8 5.5 13.5 1.3 8.2 3.9 2.1 1 1 1 2 2 2 0 HAUS augmin-like complex subunit 6 N-terminus COG2 PF06148.6 gi|433591361|ref|YP_007280857.1| - 9.5 6.0 12.8 18 5.1 6.5 2.6 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 Syntaxin PF00804.20 gi|433591361|ref|YP_007280857.1| - 9.7 6.4 19.5 2.7e+03 -1.5 13.5 2.8 1 1 0 1 1 0 0 Syntaxin ResIII PF04851.10 gi|433591362|ref|YP_007280858.1| - 3.2e-24 85.7 0.0 3.6e-22 79.0 0.0 2.4 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_C PF00271.26 gi|433591362|ref|YP_007280858.1| - 1.2e-14 53.8 0.2 2.9e-14 52.6 0.1 1.7 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DEAD PF00270.24 gi|433591362|ref|YP_007280858.1| - 1.7e-09 37.3 0.0 6.5e-09 35.5 0.0 2.0 2 1 0 2 2 2 1 DEAD/DEAH box helicase SNF2_N PF00176.18 gi|433591362|ref|YP_007280858.1| - 8.3e-06 24.8 0.0 3.4e-05 22.8 0.0 1.9 1 1 0 1 1 1 1 SNF2 family N-terminal domain AAA_22 PF13401.1 gi|433591362|ref|YP_007280858.1| - 0.077 13.1 0.0 0.79 9.8 0.0 2.4 2 1 0 2 2 2 0 AAA domain Helicase_C_2 PF13307.1 gi|433591362|ref|YP_007280858.1| - 0.14 12.1 0.0 12 5.8 0.0 2.9 4 0 0 4 4 4 0 Helicase C-terminal domain DisA_N PF02457.11 gi|433591363|ref|YP_007280859.1| - 2e-05 23.7 0.0 0.00017 20.7 0.0 2.0 1 1 0 1 1 1 1 DisA bacterial checkpoint controller nucleotide-binding DUF790 PF05626.6 gi|433591364|ref|YP_007280860.1| - 3.4e-91 305.6 0.0 4.3e-90 301.9 0.0 1.9 1 1 0 1 1 1 1 Protein of unknown function (DUF790) MobA_MobL PF03389.10 gi|433591364|ref|YP_007280860.1| - 0.076 12.4 0.0 0.13 11.5 0.0 1.3 1 0 0 1 1 1 0 MobA/MobL family Ldh_1_C PF02866.13 gi|433591365|ref|YP_007280861.1| - 4.7e-16 58.9 0.0 6.8e-16 58.4 0.0 1.2 1 0 0 1 1 1 1 lactate/malate dehydrogenase, alpha/beta C-terminal domain Ldh_1_N PF00056.18 gi|433591365|ref|YP_007280861.1| - 2.9e-14 53.0 0.0 9.6e-07 28.7 0.0 2.3 2 0 0 2 2 2 2 lactate/malate dehydrogenase, NAD binding domain DAO PF01266.19 gi|433591365|ref|YP_007280861.1| - 0.0089 14.9 0.1 0.012 14.5 0.1 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase adh_short PF00106.20 gi|433591365|ref|YP_007280861.1| - 0.076 12.9 0.7 0.18 11.7 0.5 1.6 1 0 0 1 1 1 0 short chain dehydrogenase Response_reg PF00072.19 gi|433591366|ref|YP_007280862.1| - 4e-19 68.6 0.0 5.1e-19 68.3 0.0 1.1 1 0 0 1 1 1 1 Response regulator receiver domain HisKA PF00512.20 gi|433591367|ref|YP_007280863.1| - 1.1e-06 28.4 3.2 4.4e-06 26.5 0.6 2.7 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.5 gi|433591367|ref|YP_007280863.1| - 0.013 15.4 0.0 0.04 13.9 0.0 1.9 1 0 0 1 1 1 0 PAS fold DUF4191 PF13829.1 gi|433591367|ref|YP_007280863.1| - 0.055 12.5 0.3 0.12 11.5 0.2 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4191) 7TMR-DISM_7TM PF07695.6 gi|433591367|ref|YP_007280863.1| - 6.3 6.4 10.3 1.3 8.6 2.0 2.1 1 1 0 2 2 2 0 7TM diverse intracellular signalling Nol1_Nop2_Fmu_2 PF13636.1 gi|433591368|ref|YP_007280864.1| - 2e-14 53.4 0.0 1.1e-13 51.1 0.0 1.9 1 1 0 1 1 1 1 pre-rRNA processing and ribosome biogenesis PqqD PF05402.7 gi|433591368|ref|YP_007280864.1| - 0.023 14.6 0.0 0.041 13.9 0.0 1.3 1 0 0 1 1 1 0 Coenzyme PQQ synthesis protein D (PqqD) Nol1_Nop2_Fmu PF01189.12 gi|433591369|ref|YP_007280865.1| - 1.4e-49 169.0 0.0 1.6e-49 168.8 0.0 1.0 1 0 0 1 1 1 1 NOL1/NOP2/sun family Methyltransf_31 PF13847.1 gi|433591369|ref|YP_007280865.1| - 7.1e-05 22.4 0.0 0.0001 21.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|433591369|ref|YP_007280865.1| - 9e-05 22.4 0.1 0.00019 21.4 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|433591369|ref|YP_007280865.1| - 0.00018 22.0 0.1 0.0016 18.9 0.0 2.3 2 0 0 2 2 2 1 Methyltransferase domain FtsJ PF01728.14 gi|433591369|ref|YP_007280865.1| - 0.088 12.7 0.0 0.14 12.1 0.0 1.5 1 1 0 1 1 1 0 FtsJ-like methyltransferase DUF2964 PF11177.3 gi|433591370|ref|YP_007280866.1| - 0.39 10.6 4.7 0.57 10.1 3.3 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF2964) PAC2 PF09754.4 gi|433591371|ref|YP_007280867.1| - 1.2e-41 142.9 0.0 1.4e-41 142.7 0.0 1.0 1 0 0 1 1 1 1 PAC2 family DUF4570 PF15134.1 gi|433591371|ref|YP_007280867.1| - 0.014 15.2 0.3 0.028 14.2 0.2 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4570) Nbl1_Borealin_N PF10444.4 gi|433591371|ref|YP_007280867.1| - 0.11 11.8 0.9 0.19 11.1 0.6 1.3 1 0 0 1 1 1 0 Nbl1 / Borealin N terminal AstE_AspA PF04952.9 gi|433591372|ref|YP_007280868.1| - 3.5e-15 55.6 0.1 7.7e-15 54.5 0.1 1.4 1 1 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family Glutaredoxin PF00462.19 gi|433591373|ref|YP_007280869.1| - 1.1e-17 63.6 0.1 9.4e-17 60.7 0.0 2.1 2 0 0 2 2 2 1 Glutaredoxin GST_N_3 PF13417.1 gi|433591373|ref|YP_007280869.1| - 0.0084 16.3 0.0 0.012 15.7 0.0 1.2 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain SH3BGR PF04908.10 gi|433591373|ref|YP_007280869.1| - 0.042 13.7 0.3 0.15 12.0 0.0 1.9 2 1 0 2 2 2 0 SH3-binding, glutamic acid-rich protein ArsC PF03960.10 gi|433591373|ref|YP_007280869.1| - 0.077 13.0 0.0 0.18 11.9 0.0 1.6 2 0 0 2 2 2 0 ArsC family CRT10 PF08728.5 gi|433591374|ref|YP_007280870.1| - 0.16 9.9 0.1 0.18 9.7 0.1 1.0 1 0 0 1 1 1 0 CRT10 DUF1102 PF06510.6 gi|433591375|ref|YP_007280871.1| - 0.061 13.1 0.0 0.07 12.9 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1102) TAT_signal PF10518.4 gi|433591375|ref|YP_007280871.1| - 0.27 11.3 5.9 0.74 9.9 4.1 1.8 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence SprB PF13573.1 gi|433591375|ref|YP_007280871.1| - 1 8.9 5.8 6 6.5 0.3 3.4 3 0 0 3 3 3 0 SprB repeat adh_short PF00106.20 gi|433591377|ref|YP_007280873.1| - 1.2e-30 106.6 0.9 1.8e-30 106.0 0.6 1.3 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|433591377|ref|YP_007280873.1| - 1.8e-18 67.1 0.0 2.4e-18 66.8 0.0 1.2 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|433591377|ref|YP_007280873.1| - 1.3e-12 47.7 0.3 2.1e-12 47.0 0.2 1.3 1 0 0 1 1 1 1 KR domain NAD_binding_10 PF13460.1 gi|433591377|ref|YP_007280873.1| - 0.00049 20.1 2.9 0.00089 19.3 1.3 2.0 1 1 1 2 2 2 1 NADH(P)-binding Epimerase PF01370.16 gi|433591377|ref|YP_007280873.1| - 0.0018 17.7 0.2 0.0028 17.1 0.1 1.4 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family THF_DHG_CYH_C PF02882.14 gi|433591377|ref|YP_007280873.1| - 0.0058 15.7 0.1 0.0091 15.0 0.0 1.3 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain DUF1776 PF08643.5 gi|433591377|ref|YP_007280873.1| - 0.013 14.6 0.0 0.43 9.6 0.0 2.0 2 0 0 2 2 2 0 Fungal family of unknown function (DUF1776) NAD_binding_2 PF03446.10 gi|433591377|ref|YP_007280873.1| - 0.058 13.2 0.1 0.12 12.1 0.1 1.6 1 1 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase TrkA_N PF02254.13 gi|433591377|ref|YP_007280873.1| - 0.059 13.3 0.8 0.15 12.1 0.2 2.0 2 1 0 2 2 2 0 TrkA-N domain 3Beta_HSD PF01073.14 gi|433591377|ref|YP_007280873.1| - 0.075 11.7 0.1 0.14 10.8 0.1 1.4 1 1 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family 3HCDH_N PF02737.13 gi|433591377|ref|YP_007280873.1| - 0.22 11.1 1.3 2.4 7.7 0.8 2.2 1 1 1 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GCS2 PF04107.8 gi|433591378|ref|YP_007280874.1| - 1.5e-14 53.8 0.5 2.2e-14 53.2 0.3 1.3 1 0 0 1 1 1 1 Glutamate-cysteine ligase family 2(GCS2) PAPS_reduct PF01507.14 gi|433591379|ref|YP_007280875.1| - 1.1e-17 64.4 0.0 1.7e-13 50.7 0.0 3.1 2 1 0 2 2 2 2 Phosphoadenosine phosphosulfate reductase family ATP_bind_4 PF01902.12 gi|433591379|ref|YP_007280875.1| - 0.014 14.7 0.0 0.047 13.0 0.0 1.8 2 0 0 2 2 2 0 ATP-binding region Aconitase PF00330.15 gi|433591380|ref|YP_007280876.1| - 0.14 10.5 1.3 0.16 10.4 0.9 1.0 1 0 0 1 1 1 0 Aconitase family (aconitate hydratase) PIRT PF15099.1 gi|433591380|ref|YP_007280876.1| - 0.15 11.2 1.3 0.17 11.1 0.9 1.1 1 0 0 1 1 1 0 Phosphoinositide-interacting protein family Cyclin_C PF02984.14 gi|433591380|ref|YP_007280876.1| - 0.16 11.9 0.0 0.19 11.6 0.0 1.3 1 1 0 1 1 1 0 Cyclin, C-terminal domain IncA PF04156.9 gi|433591380|ref|YP_007280876.1| - 0.2 11.2 10.0 0.25 10.8 6.9 1.0 1 0 0 1 1 1 0 IncA protein DUF308 PF03729.8 gi|433591380|ref|YP_007280876.1| - 0.28 11.1 6.0 0.5 10.3 3.8 1.6 1 1 1 2 2 2 0 Short repeat of unknown function (DUF308) CcoS PF03597.10 gi|433591380|ref|YP_007280876.1| - 0.52 9.8 0.2 0.52 9.8 0.1 2.0 2 0 0 2 2 2 0 Cytochrome oxidase maturation protein cbb3-type DUF1810 PF08837.6 gi|433591381|ref|YP_007280877.1| - 0.094 12.2 0.0 0.15 11.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1810) Lysis_S PF04971.7 gi|433591381|ref|YP_007280877.1| - 0.31 10.7 2.6 0.37 10.5 0.5 2.1 1 1 1 2 2 2 0 Lysis protein S Aldo_ket_red PF00248.16 gi|433591382|ref|YP_007280878.1| - 5.5e-64 215.7 0.0 6.5e-64 215.4 0.0 1.1 1 0 0 1 1 1 1 Aldo/keto reductase family HTH_Tnp_1 PF01527.15 gi|433591382|ref|YP_007280878.1| - 0.032 14.1 0.1 11 6.0 0.0 2.4 2 0 0 2 2 2 0 Transposase UPF0126 PF03458.8 gi|433591383|ref|YP_007280879.1| - 3.4e-36 122.7 28.2 2.3e-19 68.7 7.1 2.7 2 1 0 2 2 2 2 UPF0126 domain Amidase PF01425.16 gi|433591384|ref|YP_007280880.1| - 2.4e-104 349.6 2.9 2.8e-104 349.4 2.0 1.0 1 0 0 1 1 1 1 Amidase DUF309 PF03745.9 gi|433591385|ref|YP_007280881.1| - 1.6e-13 49.8 0.3 2.3e-13 49.3 0.2 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF309) GCC2_GCC3 PF07699.8 gi|433591386|ref|YP_007280882.1| - 0.001 18.5 0.9 0.0011 18.4 0.6 1.1 1 0 0 1 1 1 1 GCC2 and GCC3 DUF2318 PF10080.4 gi|433591386|ref|YP_007280882.1| - 0.003 17.3 0.6 0.0031 17.2 0.4 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2318) DZR PF12773.2 gi|433591386|ref|YP_007280882.1| - 0.0046 16.7 0.7 0.0054 16.5 0.5 1.1 1 0 0 1 1 1 1 Double zinc ribbon C1_1 PF00130.17 gi|433591386|ref|YP_007280882.1| - 0.0047 16.6 0.9 0.0059 16.3 0.6 1.1 1 0 0 1 1 1 1 Phorbol esters/diacylglycerol binding domain (C1 domain) Zn_Tnp_IS1595 PF12760.2 gi|433591386|ref|YP_007280882.1| - 0.016 15.0 4.6 0.019 14.7 3.2 1.2 1 0 0 1 1 1 0 Transposase zinc-ribbon domain Rep_fac-A_C PF08646.5 gi|433591386|ref|YP_007280882.1| - 0.02 14.6 0.8 0.021 14.5 0.6 1.0 1 0 0 1 1 1 0 Replication factor-A C terminal domain zf-C2HC5 PF06221.8 gi|433591386|ref|YP_007280882.1| - 0.022 14.5 0.6 0.036 13.8 0.4 1.5 1 1 0 1 1 1 0 Putative zinc finger motif, C2HC5-type NCD3G PF07562.9 gi|433591386|ref|YP_007280882.1| - 0.026 14.2 1.6 0.031 13.9 1.1 1.1 1 0 0 1 1 1 0 Nine Cysteines Domain of family 3 GPCR zf-C2H2 PF00096.21 gi|433591386|ref|YP_007280882.1| - 0.057 13.7 4.4 0.49 10.8 0.1 2.3 2 1 0 2 2 2 0 Zinc finger, C2H2 type PocR PF10114.4 gi|433591386|ref|YP_007280882.1| - 0.058 12.5 0.3 0.058 12.5 0.2 1.0 1 0 0 1 1 1 0 Sensory domain found in PocR zf-ribbon_3 PF13248.1 gi|433591386|ref|YP_007280882.1| - 0.058 12.6 0.8 1.6 8.0 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain zf-HIT PF04438.11 gi|433591386|ref|YP_007280882.1| - 0.062 12.9 3.5 0.32 10.6 2.4 1.9 1 1 0 1 1 1 0 HIT zinc finger RRN7 PF11781.3 gi|433591386|ref|YP_007280882.1| - 0.068 12.6 2.3 0.088 12.3 1.6 1.3 1 0 0 1 1 1 0 RNA polymerase I-specific transcription initiation factor Rrn7 HypA PF01155.14 gi|433591386|ref|YP_007280882.1| - 0.069 12.8 0.7 0.07 12.8 0.5 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Zn-ribbon_8 PF09723.5 gi|433591386|ref|YP_007280882.1| - 0.074 13.0 3.9 2.7 8.0 0.5 2.1 2 0 0 2 2 2 0 Zinc ribbon domain TF_Zn_Ribbon PF08271.7 gi|433591386|ref|YP_007280882.1| - 0.098 11.9 0.9 0.71 9.2 0.1 2.0 2 0 0 2 2 2 0 TFIIB zinc-binding zf-H2C2_2 PF13465.1 gi|433591386|ref|YP_007280882.1| - 0.15 12.4 3.5 0.77 10.1 2.4 2.0 1 1 0 1 1 1 0 Zinc-finger double domain zf-dskA_traR PF01258.12 gi|433591386|ref|YP_007280882.1| - 0.23 11.2 6.1 2.1 8.1 4.2 2.0 1 1 0 1 1 1 0 Prokaryotic dksA/traR C4-type zinc finger OrfB_Zn_ribbon PF07282.6 gi|433591386|ref|YP_007280882.1| - 0.3 10.7 1.9 0.36 10.5 1.4 1.1 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Zn_ribbon_recom PF13408.1 gi|433591386|ref|YP_007280882.1| - 0.33 11.2 4.1 0.58 10.4 2.9 1.4 1 1 0 1 1 1 0 Recombinase zinc beta ribbon domain DUF983 PF06170.7 gi|433591386|ref|YP_007280882.1| - 0.35 11.0 3.0 1.3 9.1 0.2 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF983) C1_3 PF07649.7 gi|433591386|ref|YP_007280882.1| - 0.53 10.3 3.1 0.76 9.8 2.2 1.3 1 0 0 1 1 1 0 C1-like domain Cas_CXXC_CXXC PF09706.5 gi|433591386|ref|YP_007280882.1| - 0.58 10.3 3.0 2.5 8.3 0.2 2.0 1 1 1 2 2 2 0 CRISPR-associated protein (Cas_CXXC_CXXC) TFIIS_C PF01096.13 gi|433591386|ref|YP_007280882.1| - 0.67 9.6 4.0 3.3 7.4 0.4 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) DNA_RNApol_7kD PF03604.8 gi|433591386|ref|YP_007280882.1| - 1.7 8.2 7.0 2 7.9 1.0 2.1 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit Inositol_P PF00459.20 gi|433591387|ref|YP_007280883.1| - 1.1e-53 182.3 2.4 1.4e-53 181.9 1.7 1.0 1 0 0 1 1 1 1 Inositol monophosphatase family FBPase PF00316.15 gi|433591387|ref|YP_007280883.1| - 0.018 13.8 0.1 0.024 13.5 0.1 1.1 1 0 0 1 1 1 0 Fructose-1-6-bisphosphatase DUF883 PF05957.8 gi|433591387|ref|YP_007280883.1| - 3.4 8.1 8.6 0.58 10.5 0.1 2.6 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF883) DUF63 PF01889.12 gi|433591388|ref|YP_007280884.1| - 4.3e-30 105.7 11.9 3.4e-28 99.4 7.2 3.0 2 1 0 2 2 2 1 Membrane protein of unknown function DUF63 Nop PF01798.13 gi|433591389|ref|YP_007280885.1| - 5.3e-41 139.4 0.1 8e-41 138.8 0.0 1.3 1 0 0 1 1 1 1 Putative snoRNA binding domain PhoU PF01895.14 gi|433591389|ref|YP_007280885.1| - 0.12 12.8 1.9 1.9 8.9 0.3 2.5 2 0 0 2 2 2 0 PhoU domain Fibrillarin PF01269.12 gi|433591390|ref|YP_007280886.1| - 5.9e-55 185.6 0.0 6.9e-55 185.4 0.0 1.0 1 0 0 1 1 1 1 Fibrillarin ASRT PF07100.6 gi|433591390|ref|YP_007280886.1| - 0.13 11.9 0.0 0.23 11.2 0.0 1.3 1 0 0 1 1 1 0 Anabaena sensory rhodopsin transducer AMP-binding PF00501.23 gi|433591392|ref|YP_007280888.1| - 4.1e-105 351.5 0.0 4.8e-105 351.3 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|433591392|ref|YP_007280888.1| - 1.3e-19 70.8 0.2 1e-18 68.0 0.1 2.3 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain GCS2 PF04107.8 gi|433591393|ref|YP_007280889.1| - 2.6e-77 259.7 0.3 3.1e-77 259.5 0.2 1.1 1 0 0 1 1 1 1 Glutamate-cysteine ligase family 2(GCS2) Amidoligase_2 PF12224.3 gi|433591393|ref|YP_007280889.1| - 0.0026 17.4 0.1 1.6 8.3 0.0 2.3 2 0 0 2 2 2 2 Putative amidoligase enzyme GCS PF03074.11 gi|433591393|ref|YP_007280889.1| - 0.016 14.3 0.0 0.023 13.7 0.0 1.2 1 0 0 1 1 1 0 Glutamate-cysteine ligase TrmB PF01978.14 gi|433591394|ref|YP_007280890.1| - 6.4e-09 35.3 0.1 1e-08 34.7 0.1 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|433591394|ref|YP_007280890.1| - 0.00025 20.3 0.0 0.00043 19.5 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TFIIE_alpha PF02002.12 gi|433591394|ref|YP_007280890.1| - 0.0045 16.4 0.0 0.0067 15.9 0.0 1.3 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_20 PF12840.2 gi|433591394|ref|YP_007280890.1| - 0.0051 16.5 0.0 0.013 15.3 0.0 1.7 1 1 1 2 2 2 1 Helix-turn-helix domain GntR PF00392.16 gi|433591394|ref|YP_007280890.1| - 0.0088 15.4 0.1 0.02 14.3 0.1 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_IclR PF09339.5 gi|433591394|ref|YP_007280890.1| - 0.015 14.8 0.0 0.022 14.3 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|433591394|ref|YP_007280890.1| - 0.13 11.9 0.0 0.28 10.8 0.0 1.5 1 0 0 1 1 1 0 MarR family Peptidase_M24 PF00557.19 gi|433591395|ref|YP_007280891.1| - 4.4e-21 75.4 3.0 5.8e-21 75.0 2.1 1.2 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.13 gi|433591395|ref|YP_007280891.1| - 6.3e-05 23.4 0.1 0.00018 21.9 0.0 1.8 2 0 0 2 2 2 1 Creatinase/Prolidase N-terminal domain COX15-CtaA PF02628.10 gi|433591396|ref|YP_007280892.1| - 1.7e-17 63.2 28.8 5.6e-17 61.5 19.9 1.8 1 1 0 1 1 1 1 Cytochrome oxidase assembly protein DUF457 PF04307.9 gi|433591397|ref|YP_007280893.1| - 1.2e-22 79.8 9.0 1.6e-22 79.5 6.3 1.1 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) Ion_trans PF00520.26 gi|433591397|ref|YP_007280893.1| - 0.046 12.9 0.1 0.06 12.5 0.1 1.2 1 0 0 1 1 1 0 Ion transport protein UDG PF03167.14 gi|433591398|ref|YP_007280894.1| - 2.9e-10 39.8 0.0 3.6e-10 39.4 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily Cupin_2 PF07883.6 gi|433591399|ref|YP_007280895.1| - 2.9e-09 36.2 0.1 3.5e-09 36.0 0.0 1.2 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.14 gi|433591399|ref|YP_007280895.1| - 0.00013 21.6 0.0 0.00018 21.2 0.0 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain AraC_binding_2 PF14525.1 gi|433591399|ref|YP_007280895.1| - 0.00072 19.1 0.1 0.00081 19.0 0.1 1.1 1 0 0 1 1 1 1 AraC-binding-like domain Cupin_3 PF05899.7 gi|433591399|ref|YP_007280895.1| - 0.032 13.5 0.0 0.041 13.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF861) HutD PF05962.6 gi|433591399|ref|YP_007280895.1| - 0.041 13.6 0.0 0.045 13.4 0.0 1.1 1 0 0 1 1 1 0 HutD DUF1637 PF07847.7 gi|433591399|ref|YP_007280895.1| - 0.085 12.2 0.0 0.087 12.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1637) Aldedh PF00171.17 gi|433591400|ref|YP_007280896.1| - 3.1e-133 444.4 0.0 3.5e-133 444.3 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family Cu-oxidase_2 PF07731.9 gi|433591401|ref|YP_007280897.1| - 2.7e-29 101.4 15.4 1.3e-18 66.8 1.5 3.1 2 1 0 2 2 2 2 Multicopper oxidase Cu-oxidase_3 PF07732.10 gi|433591401|ref|YP_007280897.1| - 4.9e-22 77.8 10.5 7.3e-19 67.6 2.2 2.7 2 1 0 2 2 2 2 Multicopper oxidase Cu-oxidase PF00394.17 gi|433591401|ref|YP_007280897.1| - 3.8e-14 52.8 0.1 1.8e-13 50.6 0.0 1.9 2 0 0 2 2 2 1 Multicopper oxidase Cupredoxin_1 PF13473.1 gi|433591401|ref|YP_007280897.1| - 0.00025 20.8 0.0 0.07 13.0 0.0 2.6 2 1 0 2 2 2 2 Cupredoxin-like domain TAT_signal PF10518.4 gi|433591401|ref|YP_007280897.1| - 0.0022 17.8 3.5 0.0039 17.0 2.4 1.4 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence TFIIB PF00382.14 gi|433591402|ref|YP_007280898.1| - 1.2e-31 108.3 0.0 7.9e-18 64.0 0.0 2.2 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|433591402|ref|YP_007280898.1| - 1.3e-12 46.7 1.5 2.4e-12 45.9 1.0 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding Sigma70_r4 PF04545.11 gi|433591402|ref|YP_007280898.1| - 0.0012 18.1 0.1 0.0012 18.1 0.1 2.4 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_AsnC-type PF13404.1 gi|433591402|ref|YP_007280898.1| - 0.0074 15.8 0.0 0.036 13.6 0.0 2.3 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain OrfB_Zn_ribbon PF07282.6 gi|433591402|ref|YP_007280898.1| - 0.0084 15.7 1.0 0.03 13.9 0.6 2.0 2 0 0 2 2 2 1 Putative transposase DNA-binding domain HTH_11 PF08279.7 gi|433591402|ref|YP_007280898.1| - 0.026 14.1 0.1 0.12 12.0 0.0 2.0 2 0 0 2 2 2 0 HTH domain Sigma70_r4_2 PF08281.7 gi|433591402|ref|YP_007280898.1| - 0.027 13.9 0.0 0.088 12.2 0.0 1.8 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_24 PF13412.1 gi|433591402|ref|YP_007280898.1| - 0.046 13.1 0.0 0.11 11.9 0.0 1.7 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_23 PF13384.1 gi|433591402|ref|YP_007280898.1| - 0.058 13.0 2.6 0.062 12.9 0.0 2.4 2 0 0 2 2 2 0 Homeodomain-like domain Prefoldin_2 PF01920.15 gi|433591404|ref|YP_007280900.1| - 0.039 13.7 0.8 0.083 12.6 0.6 1.5 1 0 0 1 1 1 0 Prefoldin subunit DUF2570 PF10828.3 gi|433591404|ref|YP_007280900.1| - 0.14 11.7 1.5 0.3 10.7 1.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2570) Macoilin PF09726.4 gi|433591404|ref|YP_007280900.1| - 0.25 9.5 0.8 0.27 9.4 0.6 1.1 1 0 0 1 1 1 0 Transmembrane protein Zn_Tnp_IS1595 PF12760.2 gi|433591405|ref|YP_007280901.1| - 0.041 13.6 5.2 0.43 10.4 3.6 2.2 1 1 0 1 1 1 0 Transposase zinc-ribbon domain Glycos_transf_1 PF00534.15 gi|433591406|ref|YP_007280902.1| - 9.2e-24 83.7 0.0 1.4e-23 83.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|433591406|ref|YP_007280902.1| - 1.2e-19 70.8 0.0 3.7e-19 69.1 0.0 1.8 2 1 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|433591406|ref|YP_007280902.1| - 1.6e-09 38.0 0.0 6.9e-09 36.0 0.0 2.0 1 1 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.1 gi|433591406|ref|YP_007280902.1| - 1.4e-07 31.4 0.1 1.1e-06 28.5 0.1 2.0 1 1 0 1 1 1 1 Glycosyl transferase 4-like Glyco_transf_4 PF13439.1 gi|433591406|ref|YP_007280902.1| - 4.1e-07 29.8 0.0 1e-06 28.6 0.0 1.6 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.1 gi|433591406|ref|YP_007280902.1| - 0.00025 21.2 0.1 0.00061 20.0 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.15 gi|433591407|ref|YP_007280903.1| - 5.3e-17 61.7 0.0 3.1e-16 59.2 0.0 2.0 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|433591407|ref|YP_007280903.1| - 1.7e-13 50.8 0.0 1.1e-12 48.3 0.0 2.0 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|433591407|ref|YP_007280903.1| - 8.6e-06 25.9 0.0 1.5e-05 25.1 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|433591407|ref|YP_007280903.1| - 1.4e-05 24.8 0.0 2e-05 24.3 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.1 gi|433591407|ref|YP_007280903.1| - 0.00035 20.7 0.0 0.00067 19.8 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Sulfatase PF00884.18 gi|433591408|ref|YP_007280904.1| - 0.02 14.1 0.0 0.024 13.8 0.0 1.2 1 0 0 1 1 1 0 Sulfatase Sulfatase PF00884.18 gi|433591409|ref|YP_007280905.1| - 4.7e-47 160.6 0.1 6.5e-47 160.2 0.1 1.2 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.17 gi|433591409|ref|YP_007280905.1| - 7.7e-14 51.7 0.5 1.4e-07 31.1 0.0 2.2 2 0 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase DUF1501 PF07394.7 gi|433591409|ref|YP_007280905.1| - 0.069 11.9 0.7 1.3 7.7 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1501) UPF0104 PF03706.8 gi|433591410|ref|YP_007280906.1| - 2.2e-36 125.6 33.9 2.8e-36 125.3 23.5 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0104) Bundlin PF05307.6 gi|433591410|ref|YP_007280906.1| - 0.12 12.2 0.9 0.23 11.3 0.1 2.0 2 0 0 2 2 2 0 Bundlin DUF457 PF04307.9 gi|433591411|ref|YP_007280907.1| - 3.8e-20 71.8 6.7 4.8e-20 71.4 4.6 1.1 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) DUF3040 PF11239.3 gi|433591411|ref|YP_007280907.1| - 0.16 12.0 2.4 1.3 9.1 0.1 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF3040) DUF457 PF04307.9 gi|433591412|ref|YP_007280908.1| - 2.4e-15 56.2 14.7 5e-15 55.1 10.2 1.4 1 1 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) SNARE_assoc PF09335.6 gi|433591413|ref|YP_007280909.1| - 6.9e-13 48.8 3.3 6.9e-13 48.8 2.3 1.6 1 1 1 2 2 2 1 SNARE associated Golgi protein DUF1119 PF06550.6 gi|433591413|ref|YP_007280909.1| - 0.57 9.2 4.6 0.11 11.6 0.7 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1119) Arylsulfotrans PF05935.6 gi|433591414|ref|YP_007280910.1| - 1.1e-09 37.3 2.7 9.4e-08 30.9 1.7 2.6 2 1 0 2 2 2 2 Arylsulfotransferase (ASST) Arylsulfotran_2 PF14269.1 gi|433591414|ref|YP_007280910.1| - 1.8e-06 27.3 0.9 0.021 14.0 0.2 2.6 3 0 0 3 3 3 2 Arylsulfotransferase (ASST) GspH PF12019.3 gi|433591414|ref|YP_007280910.1| - 0.08 13.1 2.8 1.1 9.3 0.5 2.5 2 0 0 2 2 2 0 Type II transport protein GspH Usp PF00582.21 gi|433591415|ref|YP_007280911.1| - 1.2e-63 213.4 12.9 9.4e-33 113.3 2.2 2.0 2 0 0 2 2 2 2 Universal stress protein family FR47 PF08445.5 gi|433591415|ref|YP_007280911.1| - 0.067 12.9 0.3 0.59 9.9 0.0 2.5 3 0 0 3 3 3 0 FR47-like protein DUF1697 PF08002.6 gi|433591415|ref|YP_007280911.1| - 0.12 12.4 0.3 0.56 10.2 0.0 2.2 3 0 0 3 3 3 0 Protein of unknown function (DUF1697) IF3_N PF05198.11 gi|433591415|ref|YP_007280911.1| - 0.31 10.9 1.7 4.9 7.1 0.0 3.1 3 0 0 3 3 3 0 Translation initiation factor IF-3, N-terminal domain PAS_4 PF08448.5 gi|433591416|ref|YP_007280912.1| - 1.2e-29 102.5 17.8 2e-11 43.8 0.1 4.9 5 1 1 6 6 5 3 PAS fold PAS_9 PF13426.1 gi|433591416|ref|YP_007280912.1| - 1.8e-24 86.1 0.0 2.9e-07 30.8 0.0 3.8 3 0 0 3 3 3 3 PAS domain GAF_2 PF13185.1 gi|433591416|ref|YP_007280912.1| - 3e-21 76.4 6.7 4.7e-13 49.8 0.2 3.5 3 0 0 3 3 3 2 GAF domain PAS PF00989.19 gi|433591416|ref|YP_007280912.1| - 9.2e-20 70.5 0.1 1.3e-05 24.9 0.0 3.8 3 0 0 3 3 3 3 PAS fold GAF_3 PF13492.1 gi|433591416|ref|YP_007280912.1| - 5.3e-18 65.3 2.3 2.4e-10 40.6 0.1 3.3 3 0 0 3 3 3 2 GAF domain GAF PF01590.21 gi|433591416|ref|YP_007280912.1| - 7.8e-15 55.3 3.1 9.6e-07 29.0 0.3 3.0 2 0 0 2 2 2 2 GAF domain HTH_10 PF04967.7 gi|433591416|ref|YP_007280912.1| - 2.1e-14 52.8 0.0 6e-14 51.3 0.0 1.8 1 0 0 1 1 1 1 HTH DNA binding domain PAS_8 PF13188.1 gi|433591416|ref|YP_007280912.1| - 5e-07 29.3 0.0 0.0097 15.7 0.0 4.0 3 0 0 3 3 3 2 PAS domain PAS_7 PF12860.2 gi|433591416|ref|YP_007280912.1| - 0.012 15.5 3.4 10 6.1 0.0 4.6 4 1 0 4 4 4 0 PAS fold Replic_Relax PF13814.1 gi|433591416|ref|YP_007280912.1| - 0.053 13.3 0.0 0.41 10.4 0.0 2.2 2 0 0 2 2 2 0 Replication-relaxation PAS_10 PF13596.1 gi|433591416|ref|YP_007280912.1| - 0.057 13.6 0.0 9.2 6.5 0.0 3.3 3 0 0 3 3 3 0 PAS domain N6_N4_Mtase PF01555.13 gi|433591417|ref|YP_007280913.1| - 2.6e-34 118.7 0.0 3.2e-34 118.4 0.0 1.1 1 0 0 1 1 1 1 DNA methylase Methyltransf_26 PF13659.1 gi|433591417|ref|YP_007280913.1| - 3.6e-10 39.8 0.1 0.00091 19.2 0.0 2.4 2 0 0 2 2 2 2 Methyltransferase domain UPF0020 PF01170.13 gi|433591417|ref|YP_007280913.1| - 0.0015 18.1 0.0 0.52 9.8 0.0 2.3 2 0 0 2 2 2 2 Putative RNA methylase family UPF0020 Methyltransf_11 PF08241.7 gi|433591417|ref|YP_007280913.1| - 0.13 12.7 0.1 11 6.6 0.0 3.0 3 0 0 3 3 3 0 Methyltransferase domain FMN_red PF03358.10 gi|433591420|ref|YP_007280916.1| - 1.9e-33 115.1 0.0 2.2e-33 114.9 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|433591420|ref|YP_007280916.1| - 3.6e-09 36.4 0.0 5.8e-09 35.7 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin-like fold Gate PF07670.9 gi|433591421|ref|YP_007280917.1| - 3.5e-07 30.1 7.1 0.00093 19.0 0.3 2.7 1 1 1 2 2 2 2 Nucleoside recognition SPW PF03779.9 gi|433591422|ref|YP_007280918.1| - 2.2e-06 26.9 16.1 0.00018 20.7 1.4 2.4 2 0 0 2 2 2 2 SPW repeat 7TMR-DISM_7TM PF07695.6 gi|433591422|ref|YP_007280918.1| - 0.041 13.5 10.0 0.071 12.7 6.9 1.4 1 1 0 1 1 1 0 7TM diverse intracellular signalling YesK PF14150.1 gi|433591422|ref|YP_007280918.1| - 0.3 11.2 8.8 0.064 13.3 2.2 2.1 2 0 0 2 2 2 0 YesK-like protein Gram_pos_anchor PF00746.16 gi|433591422|ref|YP_007280918.1| - 3.1 7.7 0.0 3.1 7.7 0.0 4.2 4 0 0 4 4 4 0 Gram positive anchor Tetraspannin PF00335.15 gi|433591422|ref|YP_007280918.1| - 7.6 5.7 12.2 0.62 9.2 4.2 1.8 2 0 0 2 2 2 0 Tetraspanin family SPW PF03779.9 gi|433591423|ref|YP_007280919.1| - 5.9e-07 28.7 10.9 0.0011 18.3 0.1 2.6 2 1 0 2 2 2 2 SPW repeat 7TMR-DISM_7TM PF07695.6 gi|433591423|ref|YP_007280919.1| - 0.042 13.5 4.3 0.11 12.1 3.0 1.5 1 1 0 1 1 1 0 7TM diverse intracellular signalling Cation_efflux PF01545.16 gi|433591423|ref|YP_007280919.1| - 0.54 9.2 3.9 0.23 10.5 0.2 1.8 1 1 1 2 2 2 0 Cation efflux family DNA_methylase PF00145.12 gi|433591426|ref|YP_007280922.1| - 1.5e-55 188.7 0.0 3.4e-55 187.5 0.0 1.6 1 1 0 1 1 1 1 C-5 cytosine-specific DNA methylase Methyltransf_26 PF13659.1 gi|433591426|ref|YP_007280922.1| - 0.00069 19.6 0.0 0.0016 18.4 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.5 gi|433591426|ref|YP_007280922.1| - 0.023 14.2 0.0 0.04 13.4 0.0 1.3 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Met_10 PF02475.11 gi|433591426|ref|YP_007280922.1| - 0.12 11.9 0.0 0.54 9.8 0.0 1.9 2 0 0 2 2 2 0 Met-10+ like-protein DNA_methylase PF00145.12 gi|433591427|ref|YP_007280923.1| - 6e-67 226.1 0.0 7.4e-67 225.8 0.0 1.1 1 0 0 1 1 1 1 C-5 cytosine-specific DNA methylase Methyltransf_26 PF13659.1 gi|433591427|ref|YP_007280923.1| - 2.9e-05 24.0 0.0 7.9e-05 22.6 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain MTS PF05175.9 gi|433591427|ref|YP_007280923.1| - 0.00025 20.4 0.0 0.00052 19.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_15 PF09445.5 gi|433591427|ref|YP_007280923.1| - 0.00054 19.5 0.0 0.00093 18.7 0.0 1.4 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_31 PF13847.1 gi|433591427|ref|YP_007280923.1| - 0.049 13.2 0.0 0.085 12.4 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain HATPase_c PF02518.21 gi|433591428|ref|YP_007280924.1| - 0.062 13.0 0.0 0.19 11.4 0.0 1.8 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IMPDH PF00478.20 gi|433591433|ref|YP_007280929.1| - 1e-127 425.8 3.4 1.2e-127 425.6 2.4 1.0 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain CBS PF00571.23 gi|433591433|ref|YP_007280929.1| - 6.7e-27 93.0 5.9 4.2e-14 52.0 0.3 3.0 3 0 0 3 3 3 2 CBS domain NMO PF03060.10 gi|433591433|ref|YP_007280929.1| - 9.6e-14 51.2 1.3 2.9e-07 29.9 0.2 2.3 2 0 0 2 2 2 2 Nitronate monooxygenase FMN_dh PF01070.13 gi|433591433|ref|YP_007280929.1| - 9.6e-09 34.5 4.0 1.8e-08 33.6 2.8 1.4 1 0 0 1 1 1 1 FMN-dependent dehydrogenase ThiG PF05690.9 gi|433591433|ref|YP_007280929.1| - 4.2e-05 22.7 1.9 4.2e-05 22.7 1.4 2.2 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG His_biosynth PF00977.16 gi|433591433|ref|YP_007280929.1| - 6.6e-05 22.2 2.7 0.00012 21.4 1.9 1.3 1 0 0 1 1 1 1 Histidine biosynthesis protein Glu_synthase PF01645.12 gi|433591433|ref|YP_007280929.1| - 0.00015 20.8 3.7 0.00024 20.1 2.1 1.6 2 0 0 2 2 2 1 Conserved region in glutamate synthase DHO_dh PF01180.16 gi|433591433|ref|YP_007280929.1| - 0.00019 20.4 1.1 0.00036 19.5 0.7 1.3 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase Dus PF01207.12 gi|433591433|ref|YP_007280929.1| - 0.0019 17.0 0.1 0.0033 16.3 0.1 1.3 1 0 0 1 1 1 1 Dihydrouridine synthase (Dus) PcrB PF01884.12 gi|433591433|ref|YP_007280929.1| - 0.0038 16.4 0.4 0.012 14.9 0.3 1.8 1 0 0 1 1 1 1 PcrB family Cytidylate_kin2 PF13189.1 gi|433591434|ref|YP_007280930.1| - 1.5e-19 70.6 0.1 1.2e-18 67.7 0.1 1.9 1 1 0 1 1 1 1 Cytidylate kinase-like family AAA_18 PF13238.1 gi|433591434|ref|YP_007280930.1| - 1.3e-15 57.7 0.0 1.7e-15 57.4 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|433591434|ref|YP_007280930.1| - 1.3e-11 45.3 0.5 2.6e-11 44.3 0.3 1.6 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|433591434|ref|YP_007280930.1| - 7.8e-08 32.4 0.0 1.4e-07 31.6 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|433591434|ref|YP_007280930.1| - 8e-06 26.0 0.0 1.9e-05 24.8 0.0 1.6 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.1 gi|433591434|ref|YP_007280930.1| - 3.5e-05 23.7 0.0 0.00019 21.3 0.0 1.9 1 1 0 1 1 1 1 AAA domain ADK PF00406.17 gi|433591434|ref|YP_007280930.1| - 0.00012 21.9 0.0 0.00054 19.8 0.0 1.9 1 1 1 2 2 2 1 Adenylate kinase SKI PF01202.17 gi|433591434|ref|YP_007280930.1| - 0.0039 17.0 0.2 0.031 14.1 0.2 2.0 1 1 0 1 1 1 1 Shikimate kinase RHH_1 PF01402.16 gi|433591434|ref|YP_007280930.1| - 0.0046 16.7 2.9 1.7 8.6 0.0 3.4 4 0 0 4 4 4 1 Ribbon-helix-helix protein, copG family CoaE PF01121.15 gi|433591434|ref|YP_007280930.1| - 0.0049 16.2 0.0 0.22 10.8 0.0 2.1 1 1 1 2 2 2 1 Dephospho-CoA kinase AAA_16 PF13191.1 gi|433591434|ref|YP_007280930.1| - 0.0065 16.4 0.1 0.0095 15.9 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain RHH_4 PF13467.1 gi|433591434|ref|YP_007280930.1| - 0.018 14.8 0.1 0.17 11.7 0.1 2.3 1 1 0 1 1 1 0 Ribbon-helix-helix domain AAA_5 PF07728.9 gi|433591434|ref|YP_007280930.1| - 0.03 14.0 0.0 0.066 12.9 0.0 1.5 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_22 PF13401.1 gi|433591434|ref|YP_007280930.1| - 0.033 14.3 0.0 0.065 13.3 0.0 1.6 1 1 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|433591434|ref|YP_007280930.1| - 0.064 12.9 0.0 0.12 12.0 0.0 1.5 1 1 0 1 1 1 0 NACHT domain RNA_helicase PF00910.17 gi|433591434|ref|YP_007280930.1| - 0.075 13.2 0.0 0.1 12.7 0.0 1.4 1 0 0 1 1 1 0 RNA helicase AAA_19 PF13245.1 gi|433591434|ref|YP_007280930.1| - 0.12 12.1 0.0 0.22 11.2 0.0 1.5 1 0 0 1 1 1 0 Part of AAA domain CM_2 PF01817.16 gi|433591434|ref|YP_007280930.1| - 0.15 12.1 1.7 0.23 11.5 0.2 1.9 2 0 0 2 2 2 0 Chorismate mutase type II Cupin_2 PF07883.6 gi|433591435|ref|YP_007280931.1| - 6.5e-13 47.9 2.1 1.6e-12 46.7 1.5 1.7 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.14 gi|433591435|ref|YP_007280931.1| - 5e-05 23.0 0.4 9.8e-05 22.0 0.2 1.6 1 1 1 2 2 2 1 AraC-like ligand binding domain Cupin_3 PF05899.7 gi|433591435|ref|YP_007280931.1| - 0.0015 17.8 1.3 0.003 16.9 0.9 1.6 1 1 0 1 1 1 1 Protein of unknown function (DUF861) Cupin_1 PF00190.17 gi|433591435|ref|YP_007280931.1| - 0.0017 17.7 0.0 0.0031 16.9 0.0 1.4 1 1 0 1 1 1 1 Cupin MannoseP_isomer PF01050.13 gi|433591435|ref|YP_007280931.1| - 0.029 13.9 0.0 0.038 13.6 0.0 1.2 1 0 0 1 1 1 0 Mannose-6-phosphate isomerase Nudix_N_2 PF14803.1 gi|433591435|ref|YP_007280931.1| - 0.031 13.9 1.1 0.058 13.0 0.8 1.4 1 0 0 1 1 1 0 Nudix N-terminal HgmA PF04209.8 gi|433591435|ref|YP_007280931.1| - 0.048 12.0 0.1 0.086 11.2 0.1 1.4 1 1 0 1 1 1 0 homogentisate 1,2-dioxygenase GPI PF06560.6 gi|433591435|ref|YP_007280931.1| - 0.081 11.9 0.1 0.12 11.3 0.0 1.2 1 0 0 1 1 1 0 Glucose-6-phosphate isomerase (GPI) Pirin PF02678.11 gi|433591435|ref|YP_007280931.1| - 0.13 12.1 0.7 0.27 11.1 0.4 1.6 1 1 1 2 2 2 0 Pirin zinc_ribbon_2 PF13240.1 gi|433591435|ref|YP_007280931.1| - 0.24 10.9 3.1 0.53 9.8 0.1 2.5 2 0 0 2 2 2 0 zinc-ribbon domain A2L_zn_ribbon PF08792.5 gi|433591435|ref|YP_007280931.1| - 0.37 10.3 2.3 3.1 7.3 0.0 2.3 2 0 0 2 2 2 0 A2L zinc ribbon domain TAT_signal PF10518.4 gi|433591436|ref|YP_007280932.1| - 0.011 15.6 2.3 0.017 15.1 1.6 1.3 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence YcaO PF02624.11 gi|433591437|ref|YP_007280933.1| - 5.3e-60 203.6 8.0 7.7e-60 203.1 5.6 1.2 1 0 0 1 1 1 1 YcaO-like family Na_H_Exchanger PF00999.16 gi|433591438|ref|YP_007280934.1| - 7.8e-67 225.4 49.2 9.2e-67 225.1 34.1 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family MatE PF01554.13 gi|433591439|ref|YP_007280935.1| - 7.8e-67 223.9 32.1 1.4e-38 132.1 10.1 2.4 2 0 0 2 2 2 2 MatE Polysacc_synt_C PF14667.1 gi|433591439|ref|YP_007280935.1| - 5.4e-10 39.2 19.3 2.5e-08 33.8 6.7 4.6 4 2 1 5 5 5 2 Polysaccharide biosynthesis C-terminal domain YniB PF14002.1 gi|433591439|ref|YP_007280935.1| - 0.041 13.3 1.1 0.096 12.1 0.0 2.1 2 0 0 2 2 2 0 YniB-like protein Pmp3 PF01679.12 gi|433591439|ref|YP_007280935.1| - 0.076 12.7 0.1 0.076 12.7 0.1 3.2 2 1 1 3 3 3 0 Proteolipid membrane potential modulator Iron_permease PF04120.7 gi|433591439|ref|YP_007280935.1| - 0.23 11.0 2.1 0.27 10.8 0.1 2.1 2 0 0 2 2 2 0 Low affinity iron permease TetR_C_6 PF13977.1 gi|433591440|ref|YP_007280936.1| - 9e-16 57.9 0.8 9e-16 57.9 0.5 1.7 3 0 0 3 3 3 1 Bacterial transcriptional repressor TetR_N PF00440.18 gi|433591440|ref|YP_007280936.1| - 1.8e-13 49.8 0.1 1e-12 47.4 0.0 2.0 2 0 0 2 2 2 1 Bacterial regulatory proteins, tetR family HTH_38 PF13936.1 gi|433591440|ref|YP_007280936.1| - 0.02 14.4 0.0 0.063 12.8 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain zf-HC2 PF13490.1 gi|433591440|ref|YP_007280936.1| - 0.025 14.5 1.5 2.8 7.9 0.1 2.7 2 0 0 2 2 2 0 Putative zinc-finger Glyco_tran_WbsX PF14307.1 gi|433591440|ref|YP_007280936.1| - 0.092 11.8 0.0 0.16 11.0 0.0 1.3 1 1 0 1 1 1 0 Glycosyltransferase WbsX HTH_5 PF01022.15 gi|433591440|ref|YP_007280936.1| - 0.11 12.1 0.0 0.22 11.2 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family RNA_binding PF01877.12 gi|433591441|ref|YP_007280937.1| - 1.1e-29 102.8 0.3 1.9e-29 102.0 0.0 1.5 2 0 0 2 2 2 1 RNA binding DUF4611 PF15387.1 gi|433591442|ref|YP_007280938.1| - 8.2 6.6 8.7 13 6.0 6.0 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4611) DJ-1_PfpI PF01965.19 gi|433591444|ref|YP_007280940.1| - 1.9e-18 66.3 0.5 7.4e-18 64.4 0.3 1.9 1 1 0 1 1 1 1 DJ-1/PfpI family ThuA PF06283.6 gi|433591444|ref|YP_007280940.1| - 0.087 12.5 0.0 0.12 12.0 0.0 1.2 1 0 0 1 1 1 0 Trehalose utilisation DJ-1_PfpI_N PF13587.1 gi|433591444|ref|YP_007280940.1| - 0.14 11.7 0.1 0.32 10.5 0.1 1.6 1 0 0 1 1 1 0 N-terminal domain of DJ-1_PfpI family GATase_3 PF07685.9 gi|433591444|ref|YP_007280940.1| - 0.15 11.6 0.0 0.24 11.0 0.0 1.3 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain HSP20 PF00011.16 gi|433591445|ref|YP_007280941.1| - 1.2e-21 76.4 0.1 1.6e-21 76.0 0.0 1.2 1 0 0 1 1 1 1 Hsp20/alpha crystallin family DHH PF01368.15 gi|433591447|ref|YP_007280943.1| - 2.2e-15 56.5 0.1 3e-15 56.1 0.1 1.2 1 0 0 1 1 1 1 DHH family DHHA1 PF02272.14 gi|433591447|ref|YP_007280943.1| - 6.9e-11 41.6 0.4 2e-10 40.2 0.3 1.7 2 0 0 2 2 2 1 DHHA1 domain HTH_10 PF04967.7 gi|433591448|ref|YP_007280944.1| - 7.5e-19 67.0 0.0 1e-18 66.6 0.0 1.2 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4 PF04545.11 gi|433591448|ref|YP_007280944.1| - 0.00036 19.7 0.0 0.0009 18.5 0.0 1.7 1 1 0 1 1 1 1 Sigma-70, region 4 MarR_2 PF12802.2 gi|433591448|ref|YP_007280944.1| - 0.0009 18.8 0.2 0.0021 17.6 0.1 1.6 1 1 0 1 1 1 1 MarR family HTH_11 PF08279.7 gi|433591448|ref|YP_007280944.1| - 0.0029 17.2 0.1 0.0057 16.2 0.1 1.5 1 0 0 1 1 1 1 HTH domain HTH_1 PF00126.22 gi|433591448|ref|YP_007280944.1| - 0.0088 15.7 0.3 0.019 14.6 0.2 1.5 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_24 PF13412.1 gi|433591448|ref|YP_007280944.1| - 0.076 12.4 0.0 0.12 11.7 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_30 PF13556.1 gi|433591448|ref|YP_007280944.1| - 0.08 12.5 0.0 0.2 11.2 0.0 1.7 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain ACT_5 PF13710.1 gi|433591448|ref|YP_007280944.1| - 0.082 12.7 0.5 0.18 11.6 0.2 1.8 2 0 0 2 2 2 0 ACT domain Thiolase_N PF00108.18 gi|433591449|ref|YP_007280945.1| - 2.8e-11 42.9 0.1 2.1e-10 40.0 0.0 2.0 2 0 0 2 2 2 1 Thiolase, N-terminal domain Thiolase_C PF02803.13 gi|433591449|ref|YP_007280945.1| - 4.3e-10 39.0 0.1 1.3e-09 37.4 0.1 1.9 1 1 0 1 1 1 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.21 gi|433591449|ref|YP_007280945.1| - 4.8e-06 26.2 1.3 4.8e-06 26.2 0.9 1.6 2 0 0 2 2 2 1 Beta-ketoacyl synthase, N-terminal domain ACP_syn_III PF08545.5 gi|433591449|ref|YP_007280945.1| - 0.0063 16.1 1.6 0.11 12.2 0.1 2.8 3 0 0 3 3 3 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III DUF35_N PF12172.3 gi|433591450|ref|YP_007280946.1| - 3.5e-09 36.3 3.0 3.5e-09 36.3 2.1 1.9 2 0 0 2 2 2 1 Rubredoxin-like zinc ribbon domain (DUF35_N) DUF35 PF01796.12 gi|433591450|ref|YP_007280946.1| - 0.00013 22.1 0.2 0.0015 18.7 0.0 2.5 2 0 0 2 2 2 1 DUF35 OB-fold domain ACP_syn_III_C PF08541.5 gi|433591450|ref|YP_007280946.1| - 0.00015 21.7 1.5 0.0048 16.8 0.8 2.5 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal OCD_Mu_crystall PF02423.10 gi|433591451|ref|YP_007280947.1| - 4.1e-60 203.1 4.8 5.2e-60 202.8 3.4 1.2 1 1 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family F420_oxidored PF03807.12 gi|433591451|ref|YP_007280947.1| - 5.2e-05 23.5 0.1 0.00012 22.3 0.1 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Shikimate_DH PF01488.15 gi|433591451|ref|YP_007280947.1| - 0.00056 20.0 0.0 0.00084 19.4 0.0 1.3 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase GFO_IDH_MocA PF01408.17 gi|433591451|ref|YP_007280947.1| - 0.0045 17.5 0.2 0.0088 16.5 0.2 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold NAD_binding_2 PF03446.10 gi|433591451|ref|YP_007280947.1| - 0.014 15.2 0.1 0.024 14.4 0.1 1.4 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase Saccharop_dh PF03435.13 gi|433591451|ref|YP_007280947.1| - 0.058 12.3 0.1 0.082 11.8 0.1 1.2 1 0 0 1 1 1 0 Saccharopine dehydrogenase PetG PF02529.10 gi|433591452|ref|YP_007280948.1| - 0.039 13.4 4.3 0.093 12.2 3.0 1.7 1 1 0 1 1 1 0 Cytochrome B6-F complex subunit 5 IncA PF04156.9 gi|433591452|ref|YP_007280948.1| - 0.38 10.3 11.6 0.46 10.0 8.0 1.0 1 0 0 1 1 1 0 IncA protein DUF3054 PF11255.3 gi|433591453|ref|YP_007280949.1| - 1.2e-23 83.0 6.6 1.5e-23 82.7 4.5 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3054) DnaJ PF00226.26 gi|433591454|ref|YP_007280950.1| - 1e-10 41.1 0.1 1.6e-10 40.5 0.0 1.3 1 0 0 1 1 1 1 DnaJ domain DUF164 PF02591.10 gi|433591454|ref|YP_007280950.1| - 5.3 6.9 19.6 0.5 10.2 2.3 3.7 4 0 0 4 4 4 0 Putative zinc ribbon domain ATPase-cat_bd PF12156.3 gi|433591454|ref|YP_007280950.1| - 6.3 7.4 18.0 0.75 10.3 0.6 3.6 2 1 2 4 4 4 0 Putative metal-binding domain of cation transport ATPase Stc1 PF12898.2 gi|433591454|ref|YP_007280950.1| - 8.1 6.5 15.5 11 6.1 7.3 2.9 1 1 1 2 2 2 0 Stc1 domain TIR_2 PF13676.1 gi|433591455|ref|YP_007280951.1| - 1.9e-11 44.0 0.0 2.6e-11 43.5 0.0 1.2 1 0 0 1 1 1 1 TIR domain Nuc_deoxyrib_tr PF05014.10 gi|433591455|ref|YP_007280951.1| - 0.00038 20.2 0.0 0.00075 19.3 0.0 1.5 2 0 0 2 2 2 1 Nucleoside 2-deoxyribosyltransferase DUF1863 PF08937.6 gi|433591455|ref|YP_007280951.1| - 0.0011 19.0 0.0 0.0015 18.5 0.0 1.3 1 0 0 1 1 1 1 MTH538 TIR-like domain (DUF1863) TIR PF01582.15 gi|433591455|ref|YP_007280951.1| - 0.012 15.1 0.0 0.016 14.6 0.0 1.2 1 0 0 1 1 1 0 TIR domain TIM PF00121.13 gi|433591457|ref|YP_007280953.1| - 3.9e-25 88.3 0.2 1.1e-22 80.2 0.1 2.0 1 1 0 1 1 1 1 Triosephosphate isomerase ThiG PF05690.9 gi|433591457|ref|YP_007280953.1| - 0.0003 19.9 3.1 0.00043 19.4 1.6 1.7 1 1 0 1 1 1 1 Thiazole biosynthesis protein ThiG IGPS PF00218.16 gi|433591457|ref|YP_007280953.1| - 0.0049 15.9 0.0 0.013 14.5 0.0 1.7 1 1 0 1 1 1 1 Indole-3-glycerol phosphate synthase PA PF02225.17 gi|433591457|ref|YP_007280953.1| - 0.0084 15.7 2.5 0.17 11.5 0.6 2.3 2 0 0 2 2 2 1 PA domain FMN_dh PF01070.13 gi|433591457|ref|YP_007280953.1| - 0.92 8.2 10.3 0.26 10.0 4.1 2.1 1 1 0 2 2 2 0 FMN-dependent dehydrogenase NMO PF03060.10 gi|433591457|ref|YP_007280953.1| - 1 8.4 13.3 0.24 10.5 6.2 1.9 1 1 1 2 2 2 0 Nitronate monooxygenase HTH_19 PF12844.2 gi|433591458|ref|YP_007280954.1| - 6.4e-09 35.7 0.3 1.3e-08 34.7 0.2 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.17 gi|433591458|ref|YP_007280954.1| - 1e-08 34.8 0.3 1.5e-08 34.3 0.2 1.2 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.1 gi|433591458|ref|YP_007280954.1| - 9.4e-07 28.9 0.1 1.4e-06 28.3 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.1 gi|433591458|ref|YP_007280954.1| - 3.5e-05 23.3 0.4 5.3e-05 22.7 0.3 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain DUF2201_N PF13203.1 gi|433591458|ref|YP_007280954.1| - 0.12 11.5 2.7 0.15 11.2 1.8 1.1 1 0 0 1 1 1 0 Putative metallopeptidase domain Macoilin PF09726.4 gi|433591458|ref|YP_007280954.1| - 1.1 7.4 8.9 1.1 7.4 6.2 1.1 1 0 0 1 1 1 0 Transmembrane protein ICAP-1_inte_bdg PF10480.4 gi|433591458|ref|YP_007280954.1| - 2.1 8.1 9.7 2.7 7.7 6.8 1.2 1 0 0 1 1 1 0 Beta-1 integrin binding protein CDP-OH_P_transf PF01066.16 gi|433591459|ref|YP_007280955.1| - 5e-13 49.2 9.7 1.6e-12 47.5 6.7 1.8 1 1 0 1 1 1 1 CDP-alcohol phosphatidyltransferase Glycoprotein_B PF00606.13 gi|433591459|ref|YP_007280955.1| - 5.9 4.7 4.8 7.6 4.4 3.3 1.1 1 0 0 1 1 1 0 Herpesvirus Glycoprotein B AAA_18 PF13238.1 gi|433591460|ref|YP_007280956.1| - 7.4e-25 87.7 0.0 1.1e-24 87.2 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|433591460|ref|YP_007280956.1| - 4.7e-17 62.9 0.1 1.1e-16 61.7 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|433591460|ref|YP_007280956.1| - 4.8e-05 23.2 2.0 0.00037 20.3 1.4 2.1 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|433591460|ref|YP_007280956.1| - 5e-05 23.3 6.6 0.00051 20.0 4.5 2.2 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|433591460|ref|YP_007280956.1| - 0.00035 20.2 1.0 0.0012 18.5 0.1 2.2 2 1 0 2 2 2 1 Part of AAA domain AAA_22 PF13401.1 gi|433591460|ref|YP_007280956.1| - 0.0017 18.5 0.1 0.0026 17.8 0.1 1.4 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|433591460|ref|YP_007280956.1| - 0.007 16.3 0.8 0.015 15.3 0.6 1.8 1 1 0 1 1 1 1 AAA ATPase domain PRK PF00485.13 gi|433591460|ref|YP_007280956.1| - 0.0084 15.6 0.2 0.73 9.3 0.0 2.3 1 1 1 2 2 2 1 Phosphoribulokinase / Uridine kinase family NTPase_1 PF03266.10 gi|433591460|ref|YP_007280956.1| - 0.0099 15.6 0.0 0.022 14.4 0.0 1.6 1 0 0 1 1 1 1 NTPase AAA_5 PF07728.9 gi|433591460|ref|YP_007280956.1| - 0.017 14.8 0.1 0.53 10.0 0.0 2.2 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) dNK PF01712.14 gi|433591460|ref|YP_007280956.1| - 0.021 14.7 0.0 0.025 14.4 0.0 1.2 1 0 0 1 1 1 0 Deoxynucleoside kinase Thymidylate_kin PF02223.12 gi|433591460|ref|YP_007280956.1| - 0.028 13.7 0.1 1.1 8.6 0.0 2.1 2 0 0 2 2 2 0 Thymidylate kinase ArgK PF03308.11 gi|433591460|ref|YP_007280956.1| - 0.032 13.0 0.0 0.063 12.0 0.0 1.5 1 0 0 1 1 1 0 ArgK protein CoaE PF01121.15 gi|433591460|ref|YP_007280956.1| - 0.032 13.6 0.1 2.1 7.7 0.0 2.2 2 0 0 2 2 2 0 Dephospho-CoA kinase KTI12 PF08433.5 gi|433591460|ref|YP_007280956.1| - 0.034 13.3 0.0 0.045 12.9 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 DUF87 PF01935.12 gi|433591460|ref|YP_007280956.1| - 0.04 13.7 0.0 0.052 13.3 0.0 1.6 1 1 0 1 1 1 0 Domain of unknown function DUF87 SKI PF01202.17 gi|433591460|ref|YP_007280956.1| - 0.043 13.6 0.4 0.17 11.7 0.1 1.9 2 1 0 2 2 2 0 Shikimate kinase CPT PF07931.7 gi|433591460|ref|YP_007280956.1| - 0.063 12.9 0.8 0.18 11.3 0.6 2.0 1 1 0 1 1 1 0 Chloramphenicol phosphotransferase-like protein MobB PF03205.9 gi|433591460|ref|YP_007280956.1| - 0.088 12.5 0.1 0.14 11.8 0.1 1.7 1 1 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA PF00004.24 gi|433591460|ref|YP_007280956.1| - 0.089 12.9 0.0 0.27 11.4 0.0 1.8 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Aminotran_1_2 PF00155.16 gi|433591461|ref|YP_007280957.1| - 5.3e-66 223.0 0.0 6e-66 222.8 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.15 gi|433591461|ref|YP_007280957.1| - 0.0045 15.3 0.0 0.012 13.8 0.0 1.6 2 0 0 2 2 2 1 Cys/Met metabolism PLP-dependent enzyme Alliinase_C PF04864.8 gi|433591461|ref|YP_007280957.1| - 0.0052 15.4 0.0 0.033 12.8 0.0 2.0 1 1 0 1 1 1 1 Allinase FTR PF01913.13 gi|433591461|ref|YP_007280957.1| - 0.04 13.6 0.1 0.094 12.4 0.1 1.6 1 0 0 1 1 1 0 Formylmethanofuran-tetrahydromethanopterin formyltransferase TAT_signal PF10518.4 gi|433591462|ref|YP_007280958.1| - 0.059 13.4 3.1 0.12 12.3 2.1 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence UCR_Fe-S_N PF10399.4 gi|433591462|ref|YP_007280958.1| - 0.19 10.8 0.4 0.36 10.0 0.3 1.4 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal DNA_ligase_A_N PF04675.9 gi|433591463|ref|YP_007280959.1| - 3.5e-39 134.4 0.0 3.4e-38 131.2 0.0 2.2 1 1 1 2 2 2 2 DNA ligase N terminus DNA_ligase_A_M PF01068.16 gi|433591463|ref|YP_007280959.1| - 3.6e-39 134.2 0.0 5.5e-39 133.6 0.0 1.3 1 0 0 1 1 1 1 ATP dependent DNA ligase domain DNA_ligase_A_C PF04679.10 gi|433591463|ref|YP_007280959.1| - 1.3e-17 63.9 0.0 4e-17 62.4 0.0 1.8 1 0 0 1 1 1 1 ATP dependent DNA ligase C terminal region Mis14 PF08641.7 gi|433591463|ref|YP_007280959.1| - 0.073 13.1 0.1 0.17 11.9 0.1 1.6 1 0 0 1 1 1 0 Kinetochore protein Mis14 like FAD_binding_4 PF01565.18 gi|433591465|ref|YP_007280961.1| - 3.5e-32 110.7 1.1 6.6e-32 109.8 0.8 1.5 1 0 0 1 1 1 1 FAD binding domain BBE PF08031.7 gi|433591465|ref|YP_007280961.1| - 4e-11 42.6 0.3 3.2e-10 39.7 0.0 2.5 3 0 0 3 3 3 1 Berberine and berberine like Copper-bind PF00127.15 gi|433591466|ref|YP_007280962.1| - 1.6e-15 57.1 0.1 4.7e-15 55.6 0.1 1.8 1 0 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family EntA_Immun PF08951.5 gi|433591466|ref|YP_007280962.1| - 0.0092 16.1 0.0 0.9 9.7 0.0 3.1 3 0 0 3 3 3 1 Enterocin A Immunity UPF0052 PF01933.13 gi|433591467|ref|YP_007280963.1| - 1.5e-43 149.2 0.0 2.1e-43 148.7 0.0 1.2 1 0 0 1 1 1 1 Uncharacterised protein family UPF0052 Dus PF01207.12 gi|433591468|ref|YP_007280964.1| - 4.6e-05 22.3 0.9 0.00029 19.7 0.6 1.8 1 1 0 1 1 1 1 Dihydrouridine synthase (Dus) Radical_SAM PF04055.16 gi|433591468|ref|YP_007280964.1| - 0.0003 20.9 0.1 0.43 10.7 0.0 2.9 1 1 2 3 3 3 2 Radical SAM superfamily His_biosynth PF00977.16 gi|433591468|ref|YP_007280964.1| - 0.0036 16.5 0.0 0.0058 15.9 0.0 1.3 1 0 0 1 1 1 1 Histidine biosynthesis protein NMO PF03060.10 gi|433591468|ref|YP_007280964.1| - 0.011 14.8 0.1 0.017 14.2 0.1 1.2 1 0 0 1 1 1 0 Nitronate monooxygenase PcrB PF01884.12 gi|433591468|ref|YP_007280964.1| - 0.012 14.8 0.0 0.02 14.1 0.0 1.3 1 0 0 1 1 1 0 PcrB family FMN_dh PF01070.13 gi|433591468|ref|YP_007280964.1| - 0.03 13.1 0.6 0.058 12.2 0.1 1.6 2 0 0 2 2 2 0 FMN-dependent dehydrogenase Cupin_2 PF07883.6 gi|433591469|ref|YP_007280965.1| - 5.3e-10 38.6 0.1 6.5e-10 38.3 0.1 1.1 1 0 0 1 1 1 1 Cupin domain Cupin_3 PF05899.7 gi|433591469|ref|YP_007280965.1| - 0.0024 17.2 0.1 0.0037 16.6 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF861) Pirin_C PF05726.8 gi|433591469|ref|YP_007280965.1| - 0.037 14.1 0.0 0.045 13.8 0.0 1.1 1 0 0 1 1 1 0 Pirin C-terminal cupin domain NUDIX PF00293.23 gi|433591469|ref|YP_007280965.1| - 0.064 12.8 0.2 0.085 12.4 0.1 1.1 1 0 0 1 1 1 0 NUDIX domain CENP-C_C PF11699.3 gi|433591469|ref|YP_007280965.1| - 0.12 12.4 0.0 0.16 11.9 0.0 1.3 1 1 0 1 1 1 0 Mif2/CENP-C like CitG PF01874.11 gi|433591470|ref|YP_007280966.1| - 1e-65 221.7 7.0 1.2e-65 221.5 4.8 1.0 1 0 0 1 1 1 1 ATP:dephospho-CoA triphosphoribosyl transferase DUF447 PF04289.7 gi|433591471|ref|YP_007280967.1| - 6.7e-40 136.5 0.0 7.7e-40 136.3 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF447) Ribosomal_S17e PF00833.13 gi|433591472|ref|YP_007280968.1| - 2.2e-14 53.2 0.1 2.7e-14 52.9 0.1 1.0 1 0 0 1 1 1 1 Ribosomal S17 DUF4019 PF13211.1 gi|433591472|ref|YP_007280968.1| - 0.048 13.9 0.1 0.062 13.5 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4019) DctQ PF04290.7 gi|433591473|ref|YP_007280969.1| - 0.19 11.4 6.5 0.25 11.0 4.5 1.2 1 0 0 1 1 1 0 Tripartite ATP-independent periplasmic transporters, DctQ component FtsX PF02687.16 gi|433591473|ref|YP_007280969.1| - 0.49 10.1 8.3 0.62 9.8 5.8 1.1 1 0 0 1 1 1 0 FtsX-like permease family DUF4307 PF14155.1 gi|433591473|ref|YP_007280969.1| - 7 6.4 6.1 1.9 8.2 0.5 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4307) Semialdhyde_dh PF01118.19 gi|433591474|ref|YP_007280970.1| - 6e-34 116.9 0.0 9.8e-34 116.2 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.13 gi|433591474|ref|YP_007280970.1| - 2.5e-30 105.7 0.0 3.4e-30 105.2 0.0 1.2 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain DapB_N PF01113.15 gi|433591474|ref|YP_007280970.1| - 0.00013 21.8 0.0 0.00024 20.9 0.0 1.5 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus DXP_reductoisom PF02670.11 gi|433591474|ref|YP_007280970.1| - 0.00019 21.9 0.0 0.00036 21.0 0.0 1.4 1 0 0 1 1 1 1 1-deoxy-D-xylulose 5-phosphate reductoisomerase GFO_IDH_MocA PF01408.17 gi|433591474|ref|YP_007280970.1| - 0.0057 17.1 0.0 0.012 16.0 0.0 1.6 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold Gp_dh_C PF02800.15 gi|433591474|ref|YP_007280970.1| - 0.12 11.8 0.0 0.31 10.4 0.0 1.7 2 0 0 2 2 2 0 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain HTH_10 PF04967.7 gi|433591475|ref|YP_007280971.1| - 2.7e-16 58.8 0.1 4.5e-16 58.1 0.1 1.4 1 0 0 1 1 1 1 HTH DNA binding domain MarR_2 PF12802.2 gi|433591475|ref|YP_007280971.1| - 0.039 13.6 0.1 0.083 12.5 0.1 1.6 1 0 0 1 1 1 0 MarR family HTH_20 PF12840.2 gi|433591475|ref|YP_007280971.1| - 0.057 13.2 0.0 0.12 12.1 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_1 PF00126.22 gi|433591475|ref|YP_007280971.1| - 0.19 11.4 1.8 0.41 10.4 0.1 2.4 4 0 0 4 4 4 0 Bacterial regulatory helix-turn-helix protein, lysR family Usp PF00582.21 gi|433591477|ref|YP_007280973.1| - 7.4e-12 45.6 0.9 8.9e-12 45.3 0.6 1.0 1 0 0 1 1 1 1 Universal stress protein family HGD-D PF06050.8 gi|433591477|ref|YP_007280973.1| - 0.14 10.9 0.0 0.17 10.6 0.0 1.0 1 0 0 1 1 1 0 2-hydroxyglutaryl-CoA dehydratase, D-component 2-Hacid_dh_C PF02826.14 gi|433591478|ref|YP_007280974.1| - 8.9e-55 184.5 0.0 1.3e-54 184.0 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|433591478|ref|YP_007280974.1| - 5.1e-12 45.3 0.0 6.6e-12 45.0 0.0 1.1 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain IlvN PF07991.7 gi|433591478|ref|YP_007280974.1| - 0.00085 18.7 0.0 0.017 14.4 0.0 2.1 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, catalytic domain ThiF PF00899.16 gi|433591478|ref|YP_007280974.1| - 0.0054 16.5 0.7 0.02 14.7 0.2 2.1 2 0 0 2 2 2 1 ThiF family F420_oxidored PF03807.12 gi|433591478|ref|YP_007280974.1| - 0.0061 16.9 0.0 0.013 15.8 0.0 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_7 PF13241.1 gi|433591478|ref|YP_007280974.1| - 0.037 14.2 0.0 0.066 13.4 0.0 1.4 1 0 0 1 1 1 0 Putative NAD(P)-binding NAD_binding_2 PF03446.10 gi|433591478|ref|YP_007280974.1| - 0.13 12.0 0.0 0.21 11.4 0.0 1.3 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase MtrF PF09472.5 gi|433591479|ref|YP_007280975.1| - 0.59 9.4 2.5 0.64 9.2 1.7 1.1 1 0 0 1 1 1 0 Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF) DAO PF01266.19 gi|433591480|ref|YP_007280976.1| - 4.2e-11 42.3 0.4 0.00015 20.7 0.0 2.2 1 1 1 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|433591480|ref|YP_007280976.1| - 9.1e-08 32.2 0.0 6.4e-07 29.4 0.0 2.0 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.1 gi|433591480|ref|YP_007280976.1| - 7.1e-07 29.1 0.1 0.0022 17.7 0.0 2.3 2 0 0 2 2 2 2 FAD-NAD(P)-binding FAD_binding_3 PF01494.14 gi|433591480|ref|YP_007280976.1| - 7.3e-06 25.2 0.1 0.0017 17.5 0.0 2.1 2 0 0 2 2 2 2 FAD binding domain FAD_oxidored PF12831.2 gi|433591480|ref|YP_007280976.1| - 1.5e-05 24.2 0.0 2.2e-05 23.7 0.0 1.5 1 0 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|433591480|ref|YP_007280976.1| - 0.00013 20.6 0.6 0.00099 17.6 0.7 1.9 2 0 0 2 2 2 1 HI0933-like protein GIDA PF01134.17 gi|433591480|ref|YP_007280976.1| - 0.00031 19.7 4.8 0.00035 19.5 0.3 2.3 3 0 0 3 3 3 1 Glucose inhibited division protein A Trp_halogenase PF04820.9 gi|433591480|ref|YP_007280976.1| - 0.00055 18.6 0.1 0.065 11.8 0.0 2.1 2 0 0 2 2 2 2 Tryptophan halogenase FAD_binding_2 PF00890.19 gi|433591480|ref|YP_007280976.1| - 0.00059 18.7 0.2 0.00059 18.7 0.2 1.5 2 0 0 2 2 2 1 FAD binding domain NAD_binding_8 PF13450.1 gi|433591480|ref|YP_007280976.1| - 0.00068 19.6 0.5 0.002 18.0 0.4 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.12 gi|433591480|ref|YP_007280976.1| - 0.0051 15.9 0.1 0.0088 15.1 0.1 1.4 1 0 0 1 1 1 1 Thi4 family Lycopene_cycl PF05834.7 gi|433591480|ref|YP_007280976.1| - 0.0056 15.6 0.1 0.14 11.0 0.1 2.0 2 0 0 2 2 2 1 Lycopene cyclase protein COX3 PF00510.13 gi|433591481|ref|YP_007280977.1| - 1.7e-33 116.1 2.2 2.7e-33 115.5 1.6 1.3 1 0 0 1 1 1 1 Cytochrome c oxidase subunit III Mn_catalase PF05067.7 gi|433591483|ref|YP_007280979.1| - 3.7e-80 268.7 0.3 4.4e-80 268.4 0.2 1.0 1 0 0 1 1 1 1 Manganese containing catalase Rubrerythrin PF02915.12 gi|433591483|ref|YP_007280979.1| - 0.0061 16.8 0.1 0.025 14.8 0.1 2.0 2 1 0 2 2 2 1 Rubrerythrin Ferritin-like PF12902.2 gi|433591483|ref|YP_007280979.1| - 0.012 15.2 0.2 0.018 14.6 0.2 1.4 1 0 0 1 1 1 0 Ferritin-like Foie-gras_1 PF11817.3 gi|433591483|ref|YP_007280979.1| - 0.014 14.8 0.1 0.28 10.6 0.0 2.0 1 1 1 2 2 2 0 Foie gras liver health family 1 Ferritin PF00210.19 gi|433591483|ref|YP_007280979.1| - 0.046 13.4 2.0 0.25 11.1 1.1 2.5 1 1 1 2 2 2 0 Ferritin-like domain Tetraspannin PF00335.15 gi|433591484|ref|YP_007280980.1| - 0.13 11.4 0.0 0.23 10.6 0.0 1.4 1 1 0 1 1 1 0 Tetraspanin family COX1 PF00115.15 gi|433591485|ref|YP_007280981.1| - 1.4e-143 478.8 54.4 1.4e-143 478.8 37.7 2.1 2 0 0 2 2 2 1 Cytochrome C and Quinol oxidase polypeptide I COX2 PF00116.15 gi|433591486|ref|YP_007280982.1| - 3.3e-21 75.3 0.3 4.1e-20 71.8 0.2 2.2 1 1 0 1 1 1 1 Cytochrome C oxidase subunit II, periplasmic domain COX2_TM PF02790.10 gi|433591486|ref|YP_007280982.1| - 1.7e-06 27.8 0.1 2.5e-06 27.3 0.1 1.3 1 0 0 1 1 1 1 Cytochrome C oxidase subunit II, transmembrane domain Cupredoxin_1 PF13473.1 gi|433591486|ref|YP_007280982.1| - 0.0011 18.8 0.0 0.0021 17.9 0.0 1.5 1 0 0 1 1 1 1 Cupredoxin-like domain DUF4131 PF13567.1 gi|433591486|ref|YP_007280982.1| - 0.082 12.3 0.3 0.41 10.0 0.0 2.1 2 1 1 3 3 3 0 Domain of unknown function (DUF4131) DUF3377 PF11857.3 gi|433591486|ref|YP_007280982.1| - 0.13 11.9 0.2 0.35 10.5 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF3377) DUF4153 PF13687.1 gi|433591486|ref|YP_007280982.1| - 0.57 9.6 3.4 0.92 8.9 2.2 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4153) DUF202 PF02656.10 gi|433591486|ref|YP_007280982.1| - 0.99 9.6 4.0 4.7 7.5 2.8 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF202) DUF457 PF04307.9 gi|433591487|ref|YP_007280983.1| - 4.3e-12 45.6 8.1 5.5e-12 45.2 5.6 1.1 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) DUF3995 PF13160.1 gi|433591488|ref|YP_007280984.1| - 0.018 15.0 1.2 0.023 14.7 0.8 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3995) OppC_N PF12911.2 gi|433591488|ref|YP_007280984.1| - 2.9 7.3 6.4 3.3 7.1 0.3 2.2 2 0 0 2 2 2 0 N-terminal TM domain of oligopeptide transport permease C DUF2970 PF11174.3 gi|433591488|ref|YP_007280984.1| - 5.4 6.6 9.1 4.4 6.9 0.7 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2970) Histidinol_dh PF00815.15 gi|433591489|ref|YP_007280985.1| - 1.9e-149 497.7 1.9 2.3e-149 497.5 1.3 1.0 1 0 0 1 1 1 1 Histidinol dehydrogenase AIF-MLS PF14962.1 gi|433591489|ref|YP_007280985.1| - 0.093 12.3 8.8 0.2 11.2 6.1 1.5 1 0 0 1 1 1 0 Mitochondria Localisation Sequence Fe-S_biosyn PF01521.15 gi|433591491|ref|YP_007280987.1| - 1.9e-19 69.6 0.0 2.2e-19 69.4 0.0 1.0 1 0 0 1 1 1 1 Iron-sulphur cluster biosynthesis Dodecin PF07311.7 gi|433591492|ref|YP_007280988.1| - 3e-23 81.6 0.3 3.3e-23 81.4 0.2 1.0 1 0 0 1 1 1 1 Dodecin DUF2238 PF09997.4 gi|433591493|ref|YP_007280989.1| - 0.00088 18.6 2.9 0.002 17.5 2.0 1.8 1 1 0 1 1 1 1 Predicted membrane protein (DUF2238) DUF4234 PF14018.1 gi|433591493|ref|YP_007280989.1| - 0.18 11.5 3.4 0.59 9.9 2.4 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF4234) DUF2238 PF09997.4 gi|433591494|ref|YP_007280990.1| - 0.035 13.5 0.8 0.035 13.5 0.6 1.8 2 0 0 2 2 2 0 Predicted membrane protein (DUF2238) DUF457 PF04307.9 gi|433591495|ref|YP_007280991.1| - 1.5e-11 43.8 26.7 3.1e-10 39.6 18.5 2.7 1 1 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) Aminotran_5 PF00266.14 gi|433591496|ref|YP_007280992.1| - 5.7e-34 117.4 0.0 7.1e-34 117.1 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.15 gi|433591496|ref|YP_007280992.1| - 1e-05 24.0 0.0 1.5e-05 23.4 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.12 gi|433591496|ref|YP_007280992.1| - 0.0096 14.9 0.5 0.015 14.3 0.4 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family B12-binding PF02310.14 gi|433591496|ref|YP_007280992.1| - 0.036 13.9 0.1 0.088 12.6 0.1 1.6 1 0 0 1 1 1 0 B12 binding domain zf-RanBP PF00641.13 gi|433591498|ref|YP_007280994.1| - 0.56 9.3 5.0 3.3 6.9 3.4 2.0 1 1 0 1 1 1 0 Zn-finger in Ran binding protein and others zf-ribbon_3 PF13248.1 gi|433591498|ref|YP_007280994.1| - 4.3 6.6 6.6 53 3.1 4.5 2.2 1 1 0 1 1 1 0 zinc-ribbon domain Prim_Zn_Ribbon PF08273.7 gi|433591498|ref|YP_007280994.1| - 7.4 6.7 8.7 5.1 7.2 1.8 2.5 1 1 1 2 2 2 0 Zinc-binding domain of primase-helicase Usp PF00582.21 gi|433591499|ref|YP_007280995.1| - 8.8e-12 45.4 0.8 1.3e-11 44.8 0.6 1.3 1 1 0 1 1 1 1 Universal stress protein family TrkA_N PF02254.13 gi|433591499|ref|YP_007280995.1| - 0.023 14.6 0.1 0.038 13.9 0.0 1.4 1 1 0 1 1 1 0 TrkA-N domain HisKA_2 PF07568.7 gi|433591499|ref|YP_007280995.1| - 0.13 12.1 0.0 0.23 11.3 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase Usp PF00582.21 gi|433591500|ref|YP_007280996.1| - 5e-35 120.7 1.4 5.7e-35 120.5 0.9 1.0 1 0 0 1 1 1 1 Universal stress protein family MS_channel PF00924.13 gi|433591501|ref|YP_007280997.1| - 1.4e-33 116.0 0.1 1.8e-33 115.6 0.0 1.1 1 0 0 1 1 1 1 Mechanosensitive ion channel B12-binding PF02310.14 gi|433591501|ref|YP_007280997.1| - 0.038 13.8 0.1 0.082 12.7 0.0 1.6 1 0 0 1 1 1 0 B12 binding domain TM_helix PF05552.7 gi|433591501|ref|YP_007280997.1| - 0.063 12.9 0.3 0.063 12.9 0.2 2.1 2 0 0 2 2 2 0 Conserved TM helix Regulator_TrmB PF11495.3 gi|433591502|ref|YP_007280998.1| - 2.6e-69 232.7 0.6 4.2e-69 232.1 0.2 1.4 2 0 0 2 2 2 1 Archaeal transcriptional regulator TrmB TrmB PF01978.14 gi|433591502|ref|YP_007280998.1| - 3.1e-21 74.8 0.0 7.6e-20 70.3 0.0 2.4 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|433591502|ref|YP_007280998.1| - 4.1e-06 26.4 0.6 2.1e-05 24.2 0.0 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|433591502|ref|YP_007280998.1| - 5.6e-06 25.9 0.1 2.2e-05 24.0 0.0 2.0 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|433591502|ref|YP_007280998.1| - 0.00011 21.7 0.3 0.00029 20.3 0.0 1.9 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|433591502|ref|YP_007280998.1| - 0.00026 20.3 0.1 0.0033 16.7 0.0 2.6 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|433591502|ref|YP_007280998.1| - 0.00035 20.1 0.0 0.0024 17.5 0.0 2.2 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_CodY PF08222.6 gi|433591502|ref|YP_007280998.1| - 0.002 17.4 0.0 0.0066 15.7 0.0 1.9 1 0 0 1 1 1 1 CodY helix-turn-helix domain Rrf2 PF02082.15 gi|433591502|ref|YP_007280998.1| - 0.0041 17.2 0.0 0.0088 16.1 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator DUF2250 PF10007.4 gi|433591502|ref|YP_007280998.1| - 0.014 15.2 0.0 0.03 14.2 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) MarR PF01047.17 gi|433591502|ref|YP_007280998.1| - 0.037 13.7 0.1 0.14 11.8 0.0 1.9 2 0 0 2 2 2 0 MarR family HTH_9 PF08221.6 gi|433591502|ref|YP_007280998.1| - 0.091 12.6 0.0 0.26 11.1 0.0 1.7 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_29 PF13551.1 gi|433591502|ref|YP_007280998.1| - 0.12 12.5 0.3 3.4 7.8 0.0 3.0 2 1 1 3 3 3 0 Winged helix-turn helix BPD_transp_1 PF00528.17 gi|433591503|ref|YP_007280999.1| - 2.9e-16 59.5 21.3 2.9e-16 59.5 14.8 2.6 2 1 1 3 3 3 1 Binding-protein-dependent transport system inner membrane component TraP PF07296.6 gi|433591503|ref|YP_007280999.1| - 0.036 13.0 3.0 1.2 8.1 0.3 2.3 2 0 0 2 2 2 0 TraP protein ThiW PF09512.5 gi|433591503|ref|YP_007280999.1| - 0.27 11.0 11.9 0.12 12.1 3.7 2.5 2 0 0 2 2 2 0 Thiamine-precursor transporter protein (ThiW) BPD_transp_1 PF00528.17 gi|433591504|ref|YP_007281000.1| - 1.4e-10 41.0 18.8 1.4e-10 41.0 13.0 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.22 gi|433591505|ref|YP_007281001.1| - 6.1e-33 114.0 0.0 9.6e-33 113.3 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|433591505|ref|YP_007281001.1| - 3.7e-09 36.9 0.0 8.9e-06 25.8 0.0 2.1 1 1 1 2 2 2 2 AAA domain TOBE PF03459.12 gi|433591505|ref|YP_007281001.1| - 1.6e-05 24.8 0.4 1 9.5 0.1 4.1 3 1 0 3 3 3 1 TOBE domain TOBE_2 PF08402.5 gi|433591505|ref|YP_007281001.1| - 0.00045 20.1 0.2 0.017 15.0 0.1 2.8 1 1 0 1 1 1 1 TOBE domain SMC_N PF02463.14 gi|433591505|ref|YP_007281001.1| - 0.00047 19.4 0.1 0.0021 17.3 0.1 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain DUF258 PF03193.11 gi|433591505|ref|YP_007281001.1| - 0.0022 17.1 0.0 0.0035 16.5 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_29 PF13555.1 gi|433591505|ref|YP_007281001.1| - 0.0034 16.8 0.0 0.0069 15.8 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_33 PF13671.1 gi|433591505|ref|YP_007281001.1| - 0.0054 16.6 0.2 0.015 15.1 0.1 1.8 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|433591505|ref|YP_007281001.1| - 0.009 15.1 0.0 0.021 13.8 0.0 1.5 2 0 0 2 2 2 1 AAA ATPase domain AAA_25 PF13481.1 gi|433591505|ref|YP_007281001.1| - 0.012 14.9 0.1 0.53 9.6 0.0 2.5 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.1 gi|433591505|ref|YP_007281001.1| - 0.013 15.5 0.2 0.036 14.0 0.2 1.8 1 1 0 1 1 1 0 AAA ATPase domain AAA_22 PF13401.1 gi|433591505|ref|YP_007281001.1| - 0.015 15.4 0.4 0.047 13.8 0.3 1.9 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|433591505|ref|YP_007281001.1| - 0.034 13.7 0.1 0.086 12.4 0.0 1.6 2 0 0 2 2 2 0 AAA domain Rad17 PF03215.10 gi|433591505|ref|YP_007281001.1| - 0.045 12.4 0.0 0.059 12.0 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein RNA_helicase PF00910.17 gi|433591505|ref|YP_007281001.1| - 0.046 13.8 0.0 0.093 12.9 0.0 1.5 1 0 0 1 1 1 0 RNA helicase MobB PF03205.9 gi|433591505|ref|YP_007281001.1| - 0.052 13.2 0.2 0.12 12.0 0.1 1.8 1 1 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA PF00004.24 gi|433591505|ref|YP_007281001.1| - 0.078 13.1 0.1 0.22 11.6 0.0 1.8 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) NB-ARC PF00931.17 gi|433591505|ref|YP_007281001.1| - 0.079 11.8 0.0 0.12 11.1 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain AAA_17 PF13207.1 gi|433591505|ref|YP_007281001.1| - 0.084 13.6 0.6 0.26 12.1 0.4 2.0 1 1 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|433591505|ref|YP_007281001.1| - 0.11 11.9 0.1 0.5 9.7 0.0 2.0 2 0 0 2 2 2 0 AAA-like domain AAA_18 PF13238.1 gi|433591505|ref|YP_007281001.1| - 0.13 12.5 0.0 0.32 11.2 0.0 1.8 1 1 0 1 1 1 0 AAA domain GFO_IDH_MocA PF01408.17 gi|433591506|ref|YP_007281002.1| - 1.2e-24 87.0 0.0 2.3e-24 86.2 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|433591506|ref|YP_007281002.1| - 1.9e-10 40.5 0.1 6.6e-10 38.7 0.0 1.9 2 0 0 2 2 2 1 Oxidoreductase family, C-terminal alpha/beta domain 2-Hacid_dh_C PF02826.14 gi|433591506|ref|YP_007281002.1| - 0.00036 19.7 0.0 0.00065 18.8 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.10 gi|433591506|ref|YP_007281002.1| - 0.0025 17.6 0.0 0.0069 16.2 0.0 1.8 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.12 gi|433591506|ref|YP_007281002.1| - 0.0026 18.1 0.0 0.0061 16.9 0.0 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent IlvN PF07991.7 gi|433591506|ref|YP_007281002.1| - 0.0065 15.8 0.0 0.012 14.9 0.0 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain CoA_binding PF02629.14 gi|433591506|ref|YP_007281002.1| - 0.027 14.9 0.0 0.063 13.7 0.0 1.5 1 0 0 1 1 1 0 CoA binding domain NAD_binding_3 PF03447.11 gi|433591506|ref|YP_007281002.1| - 0.029 14.7 0.0 0.058 13.7 0.0 1.5 1 0 0 1 1 1 0 Homoserine dehydrogenase, NAD binding domain ThiF PF00899.16 gi|433591506|ref|YP_007281002.1| - 0.029 14.1 2.3 1.6 8.5 0.2 2.7 2 1 1 3 3 3 0 ThiF family Semialdhyde_dh PF01118.19 gi|433591506|ref|YP_007281002.1| - 0.068 13.4 0.0 0.18 12.1 0.0 1.7 1 1 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain AP_endonuc_2 PF01261.19 gi|433591507|ref|YP_007281003.1| - 5.7e-32 110.7 4.2 6.6e-32 110.5 2.4 1.5 1 1 0 1 1 1 1 Xylose isomerase-like TIM barrel AP_endonuc_2_N PF07582.7 gi|433591507|ref|YP_007281003.1| - 8.1e-19 66.9 0.0 1.8e-18 65.7 0.0 1.6 1 0 0 1 1 1 1 AP endonuclease family 2 C terminus DUF3122 PF11320.3 gi|433591507|ref|YP_007281003.1| - 0.03 14.2 0.0 0.056 13.3 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3122) YbjQ_1 PF01906.12 gi|433591508|ref|YP_007281004.1| - 0.017 15.5 0.0 0.021 15.2 0.0 1.2 1 0 0 1 1 1 0 Putative heavy-metal-binding DUF2960 PF11173.3 gi|433591508|ref|YP_007281004.1| - 0.19 12.0 0.4 0.36 11.1 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2960) FAD_binding_7 PF03441.9 gi|433591509|ref|YP_007281005.1| - 1e-98 329.9 1.8 1.3e-98 329.6 1.2 1.1 1 0 0 1 1 1 1 FAD binding domain of DNA photolyase DNA_photolyase PF00875.13 gi|433591509|ref|YP_007281005.1| - 8.7e-49 165.4 0.7 4.3e-48 163.1 0.2 2.2 2 0 0 2 2 2 1 DNA photolyase Usp PF00582.21 gi|433591509|ref|YP_007281005.1| - 0.019 15.1 1.5 0.044 13.9 0.3 2.1 2 0 0 2 2 2 0 Universal stress protein family Tubulin PF00091.20 gi|433591510|ref|YP_007281006.1| - 4.1e-24 85.5 0.0 7.7e-24 84.7 0.0 1.4 1 0 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain Lactamase_B PF00753.22 gi|433591511|ref|YP_007281007.1| - 8.9e-21 74.4 4.9 1.3e-20 73.8 3.4 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|433591511|ref|YP_007281007.1| - 0.00041 19.9 0.0 0.00058 19.4 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain TrmB PF01978.14 gi|433591511|ref|YP_007281007.1| - 0.0062 16.2 0.0 0.056 13.1 0.0 2.2 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MAF_flag10 PF01973.13 gi|433591512|ref|YP_007281008.1| - 6.9e-26 90.7 0.0 8.6e-26 90.4 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF115 Pterin_bind PF00809.17 gi|433591513|ref|YP_007281009.1| - 4.1e-30 104.7 0.0 6.2e-30 104.1 0.0 1.3 1 0 0 1 1 1 1 Pterin binding enzyme Phage_Mu_Gam PF07352.7 gi|433591513|ref|YP_007281009.1| - 0.14 11.6 0.0 0.94 8.9 0.0 2.0 2 0 0 2 2 2 0 Bacteriophage Mu Gam like protein AMP-binding PF00501.23 gi|433591514|ref|YP_007281010.1| - 1.5e-29 102.6 0.1 4.2e-29 101.1 0.0 1.6 1 1 0 1 1 1 1 AMP-binding enzyme Cdc6_C PF09079.6 gi|433591515|ref|YP_007281011.1| - 6.5e-19 67.4 0.2 1.8e-18 66.0 0.1 1.8 2 0 0 2 2 2 1 CDC6, C terminal AAA_22 PF13401.1 gi|433591515|ref|YP_007281011.1| - 6.1e-12 45.8 0.2 2e-11 44.1 0.0 1.8 2 1 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|433591515|ref|YP_007281011.1| - 7.7e-10 39.0 0.5 4.7e-09 36.4 0.2 2.4 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.24 gi|433591515|ref|YP_007281011.1| - 5.2e-05 23.4 0.0 0.00019 21.6 0.0 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) NB-ARC PF00931.17 gi|433591515|ref|YP_007281011.1| - 6.7e-05 21.8 0.0 0.00011 21.1 0.0 1.3 1 0 0 1 1 1 1 NB-ARC domain AAA_5 PF07728.9 gi|433591515|ref|YP_007281011.1| - 0.00014 21.5 0.2 0.0011 18.7 0.1 2.3 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) PhoH PF02562.11 gi|433591515|ref|YP_007281011.1| - 0.00039 19.7 0.1 0.057 12.6 0.0 2.3 2 0 0 2 2 2 1 PhoH-like protein AAA_32 PF13654.1 gi|433591515|ref|YP_007281011.1| - 0.00053 18.7 0.2 0.51 8.9 0.2 2.3 2 0 0 2 2 2 2 AAA domain Sigma54_activat PF00158.21 gi|433591515|ref|YP_007281011.1| - 0.00086 18.8 0.2 0.0022 17.4 0.0 1.8 2 0 0 2 2 2 1 Sigma-54 interaction domain DUF815 PF05673.8 gi|433591515|ref|YP_007281011.1| - 0.0012 17.8 0.0 0.0026 16.7 0.0 1.6 1 1 0 1 1 1 1 Protein of unknown function (DUF815) ATP-synt_ab PF00006.20 gi|433591515|ref|YP_007281011.1| - 0.0042 16.6 0.0 0.0067 15.9 0.0 1.4 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain PIF1 PF05970.9 gi|433591515|ref|YP_007281011.1| - 0.0092 14.9 0.1 0.04 12.8 0.0 2.0 2 0 0 2 2 2 1 PIF1-like helicase DUF87 PF01935.12 gi|433591515|ref|YP_007281011.1| - 0.015 15.1 2.6 0.074 12.8 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function DUF87 FtsK_SpoIIIE PF01580.13 gi|433591515|ref|YP_007281011.1| - 0.023 14.1 0.0 0.058 12.8 0.0 1.7 1 0 0 1 1 1 0 FtsK/SpoIIIE family Arf PF00025.16 gi|433591515|ref|YP_007281011.1| - 0.036 13.3 0.0 0.063 12.5 0.0 1.4 1 0 0 1 1 1 0 ADP-ribosylation factor family IstB_IS21 PF01695.12 gi|433591515|ref|YP_007281011.1| - 0.057 12.8 0.0 1.3 8.3 0.0 2.4 2 0 0 2 2 2 0 IstB-like ATP binding protein ABC_tran PF00005.22 gi|433591515|ref|YP_007281011.1| - 0.065 13.5 0.2 0.2 11.9 0.2 2.1 1 1 0 1 1 1 0 ABC transporter Sigma54_activ_2 PF14532.1 gi|433591515|ref|YP_007281011.1| - 0.08 12.9 0.0 0.37 10.8 0.0 2.1 2 0 0 2 2 2 0 Sigma-54 interaction domain RNA_helicase PF00910.17 gi|433591515|ref|YP_007281011.1| - 0.098 12.8 0.0 0.41 10.8 0.0 2.1 2 0 0 2 2 2 0 RNA helicase DEAD PF00270.24 gi|433591515|ref|YP_007281011.1| - 0.1 12.0 1.2 3.3 7.1 0.2 2.4 1 1 0 2 2 2 0 DEAD/DEAH box helicase PCP_red PF08369.5 gi|433591515|ref|YP_007281011.1| - 0.11 12.4 0.2 0.27 11.1 0.1 1.7 1 0 0 1 1 1 0 Proto-chlorophyllide reductase 57 kD subunit DDE_5 PF13546.1 gi|433591516|ref|YP_007281012.1| - 1.8e-18 66.3 0.0 4.2e-18 65.1 0.0 1.4 1 1 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_1 PF01609.16 gi|433591516|ref|YP_007281012.1| - 3.3e-12 46.3 0.4 6.3e-12 45.4 0.1 1.6 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_2 PF04693.7 gi|433591516|ref|YP_007281012.1| - 0.00013 21.0 0.0 0.00057 18.9 0.0 1.9 1 1 0 1 1 1 1 Archaeal putative transposase ISC1217 SpoU_methylase PF00588.14 gi|433591517|ref|YP_007281013.1| - 1.8e-27 95.9 0.0 2.5e-27 95.5 0.0 1.2 1 0 0 1 1 1 1 SpoU rRNA Methylase family Prok-RING_1 PF14446.1 gi|433591519|ref|YP_007281015.1| - 0.14 11.9 0.5 0.32 10.7 0.3 1.6 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 TF_Zn_Ribbon PF08271.7 gi|433591519|ref|YP_007281015.1| - 0.29 10.4 2.1 0.87 8.9 1.4 1.8 1 0 0 1 1 1 0 TFIIB zinc-binding EamA PF00892.15 gi|433591520|ref|YP_007281016.1| - 1.4e-31 109.1 32.5 5.2e-17 62.0 5.8 2.2 2 0 0 2 2 2 2 EamA-like transporter family Lysis_S PF04971.7 gi|433591520|ref|YP_007281016.1| - 0.04 13.5 3.0 0.58 9.8 0.2 3.0 2 0 0 2 2 2 0 Lysis protein S EmrE PF13536.1 gi|433591520|ref|YP_007281016.1| - 0.67 10.1 38.7 0.11 12.7 7.9 3.6 1 1 2 3 3 3 0 Multidrug resistance efflux transporter TPT PF03151.11 gi|433591520|ref|YP_007281016.1| - 6 6.4 23.8 0.62 9.6 10.3 2.6 2 1 0 2 2 2 0 Triose-phosphate Transporter family AsnC_trans_reg PF01037.16 gi|433591521|ref|YP_007281017.1| - 1.9e-11 43.4 0.4 3.3e-11 42.7 0.3 1.4 1 0 0 1 1 1 1 AsnC family HTH_24 PF13412.1 gi|433591521|ref|YP_007281017.1| - 2.5e-07 29.9 0.1 5.4e-07 28.9 0.1 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.5 gi|433591521|ref|YP_007281017.1| - 3.4e-06 26.5 0.0 7.8e-06 25.3 0.0 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_20 PF12840.2 gi|433591521|ref|YP_007281017.1| - 5.7e-05 22.8 0.0 0.00014 21.6 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|433591521|ref|YP_007281017.1| - 0.00014 21.4 0.1 0.0033 17.1 0.0 2.3 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.1 gi|433591521|ref|YP_007281017.1| - 0.0021 18.3 0.2 0.0061 16.8 0.0 1.9 2 1 0 2 2 2 1 Winged helix DNA-binding domain GYD PF08734.6 gi|433591521|ref|YP_007281017.1| - 0.011 15.3 0.1 0.018 14.7 0.0 1.4 1 0 0 1 1 1 0 GYD domain MarR_2 PF12802.2 gi|433591521|ref|YP_007281017.1| - 0.027 14.1 0.1 0.26 10.9 0.0 2.2 2 0 0 2 2 2 0 MarR family DUF2250 PF10007.4 gi|433591521|ref|YP_007281017.1| - 0.039 13.8 0.0 0.11 12.4 0.0 1.7 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) Nfu_N PF08712.6 gi|433591521|ref|YP_007281017.1| - 0.051 13.1 0.0 0.082 12.5 0.0 1.4 1 0 0 1 1 1 0 Scaffold protein Nfu/NifU N terminal HTH_5 PF01022.15 gi|433591521|ref|YP_007281017.1| - 0.055 13.1 0.0 0.097 12.3 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family GatB_N PF02934.10 gi|433591522|ref|YP_007281018.1| - 1.1e-73 247.6 0.0 1.7e-73 247.0 0.0 1.2 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.13 gi|433591522|ref|YP_007281018.1| - 4.8e-23 81.5 0.0 2e-22 79.5 0.0 2.0 2 0 0 2 2 2 1 GatB domain GAD PF02938.9 gi|433591522|ref|YP_007281018.1| - 2.3e-13 50.1 0.0 4.4e-13 49.1 0.0 1.5 1 0 0 1 1 1 1 GAD domain YqeY PF09424.5 gi|433591522|ref|YP_007281018.1| - 0.0018 18.1 0.3 0.0048 16.7 0.2 1.7 1 0 0 1 1 1 1 Yqey-like protein ABC_tran PF00005.22 gi|433591523|ref|YP_007281019.1| - 1.5e-34 119.2 0.0 2.2e-34 118.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|433591523|ref|YP_007281019.1| - 3.6e-09 36.9 0.0 9.8e-05 22.4 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_23 PF13476.1 gi|433591523|ref|YP_007281019.1| - 0.00012 22.5 0.0 0.00014 22.2 0.0 1.2 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|433591523|ref|YP_007281019.1| - 0.00019 20.7 0.1 0.0025 17.1 0.1 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain DUF258 PF03193.11 gi|433591523|ref|YP_007281019.1| - 0.011 14.9 0.0 0.021 14.0 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA PF00004.24 gi|433591523|ref|YP_007281019.1| - 0.013 15.7 0.0 0.058 13.6 0.0 2.0 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.1 gi|433591523|ref|YP_007281019.1| - 0.014 15.0 0.0 0.042 13.4 0.0 1.8 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.7 gi|433591523|ref|YP_007281019.1| - 0.015 14.3 0.0 0.027 13.5 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin AAA_25 PF13481.1 gi|433591523|ref|YP_007281019.1| - 0.032 13.6 0.2 0.17 11.2 0.0 2.2 3 0 0 3 3 3 0 AAA domain AAA_22 PF13401.1 gi|433591523|ref|YP_007281019.1| - 0.034 14.2 0.0 0.094 12.8 0.0 1.7 1 1 0 1 1 1 0 AAA domain MobB PF03205.9 gi|433591523|ref|YP_007281019.1| - 0.042 13.5 0.3 0.2 11.3 0.0 2.4 3 1 0 3 3 3 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_29 PF13555.1 gi|433591523|ref|YP_007281019.1| - 0.044 13.3 0.1 0.089 12.3 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain Peptidase_U40 PF10464.4 gi|433591523|ref|YP_007281019.1| - 0.045 13.1 0.0 0.074 12.4 0.0 1.3 1 0 0 1 1 1 0 Peptidase U40 AAA_17 PF13207.1 gi|433591523|ref|YP_007281019.1| - 0.063 14.1 0.1 0.21 12.4 0.1 1.8 1 1 0 1 1 1 0 AAA domain DUF3584 PF12128.3 gi|433591523|ref|YP_007281019.1| - 0.065 10.5 0.0 0.092 10.0 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) AAA_13 PF13166.1 gi|433591523|ref|YP_007281019.1| - 0.098 11.1 0.0 1 7.7 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.1 gi|433591523|ref|YP_007281019.1| - 0.11 12.5 3.2 0.25 11.3 1.2 2.4 2 1 0 2 2 2 0 AAA ATPase domain AAA_33 PF13671.1 gi|433591523|ref|YP_007281019.1| - 0.13 12.1 0.4 0.47 10.3 0.1 2.0 1 1 0 2 2 2 0 AAA domain F420_oxidored PF03807.12 gi|433591523|ref|YP_007281019.1| - 0.15 12.5 0.8 0.43 11.0 0.1 2.1 2 0 0 2 2 1 0 NADP oxidoreductase coenzyme F420-dependent UPF0079 PF02367.12 gi|433591523|ref|YP_007281019.1| - 0.16 11.5 0.0 0.28 10.8 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 FecCD PF01032.13 gi|433591524|ref|YP_007281020.1| - 5e-95 317.8 27.2 5e-95 317.8 18.9 2.0 1 1 1 2 2 2 2 FecCD transport family Amidase PF01425.16 gi|433591524|ref|YP_007281020.1| - 0.054 12.3 1.5 0.088 11.6 1.1 1.2 1 0 0 1 1 1 0 Amidase Peripla_BP_2 PF01497.13 gi|433591525|ref|YP_007281021.1| - 8e-30 103.7 1.8 1.2e-29 103.1 1.2 1.2 1 0 0 1 1 1 1 Periplasmic binding protein SRP19 PF01922.12 gi|433591526|ref|YP_007281022.1| - 5.7e-28 97.3 0.1 6.3e-28 97.2 0.1 1.0 1 0 0 1 1 1 1 SRP19 protein Gar1 PF04410.9 gi|433591527|ref|YP_007281023.1| - 3.5e-05 23.3 0.0 3.5e-05 23.3 0.0 1.1 1 0 0 1 1 1 1 Gar1/Naf1 RNA binding region DUF1119 PF06550.6 gi|433591528|ref|YP_007281024.1| - 2.3e-80 269.7 24.2 4.1e-80 268.9 16.8 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF1119) Peptidase_A22B PF04258.8 gi|433591528|ref|YP_007281024.1| - 4.2e-05 23.1 6.7 0.00088 18.8 0.3 2.8 2 1 1 3 3 3 2 Signal peptide peptidase DUF3099 PF11298.3 gi|433591528|ref|YP_007281024.1| - 0.61 9.8 8.4 0.61 9.8 1.6 3.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3099) HATPase_c PF02518.21 gi|433591529|ref|YP_007281025.1| - 9.7e-18 63.9 0.7 2.7e-16 59.2 0.5 2.3 1 1 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.5 gi|433591529|ref|YP_007281025.1| - 1.7e-10 40.9 0.1 4.3e-10 39.5 0.0 1.8 1 0 0 1 1 1 1 PAS fold HisKA PF00512.20 gi|433591529|ref|YP_007281025.1| - 5.6e-09 35.8 3.0 1.1e-08 34.9 1.6 1.9 1 1 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c_2 PF13581.1 gi|433591529|ref|YP_007281025.1| - 0.00053 19.7 0.3 0.004 16.9 0.0 2.5 2 1 0 2 2 2 1 Histidine kinase-like ATPase domain PAS_9 PF13426.1 gi|433591529|ref|YP_007281025.1| - 0.0012 19.1 0.0 0.0024 18.2 0.0 1.5 1 0 0 1 1 1 1 PAS domain HATPase_c_3 PF13589.1 gi|433591529|ref|YP_007281025.1| - 0.03 13.9 0.0 0.066 12.8 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase tRNA-synt_1e PF01406.14 gi|433591530|ref|YP_007281026.1| - 5.5e-106 354.0 0.1 6.7e-105 350.5 0.1 2.0 1 1 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain DALR_2 PF09190.6 gi|433591530|ref|YP_007281026.1| - 1.6e-13 50.7 0.8 8e-13 48.4 0.1 2.2 1 1 0 2 2 2 1 DALR domain tRNA-synt_1g PF09334.6 gi|433591530|ref|YP_007281026.1| - 2.2e-12 46.3 0.0 9e-06 24.5 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1f PF01921.13 gi|433591530|ref|YP_007281026.1| - 2.7e-09 36.1 0.1 6.6e-05 21.7 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (K) tRNA-synt_1 PF00133.17 gi|433591530|ref|YP_007281026.1| - 6.5e-05 21.1 0.0 0.00095 17.2 0.0 2.1 2 0 0 2 2 2 1 tRNA synthetases class I (I, L, M and V) tRNA-synt_1d PF00750.14 gi|433591530|ref|YP_007281026.1| - 8.1e-05 21.5 0.0 0.014 14.1 0.0 2.5 2 0 0 2 2 2 2 tRNA synthetases class I (R) UVR PF02151.14 gi|433591530|ref|YP_007281026.1| - 0.0095 15.4 0.4 0.035 13.6 0.3 2.0 1 0 0 1 1 1 1 UvrB/uvrC motif tRNA-synt_1c PF00749.16 gi|433591530|ref|YP_007281026.1| - 0.028 13.0 0.0 0.062 11.9 0.0 1.5 1 0 0 1 1 1 0 tRNA synthetases class I (E and Q), catalytic domain SPOR PF05036.8 gi|433591530|ref|YP_007281026.1| - 0.16 12.1 0.2 4.6 7.4 0.0 2.5 2 0 0 2 2 2 0 Sporulation related domain TPR_7 PF13176.1 gi|433591530|ref|YP_007281026.1| - 0.58 10.0 4.0 19 5.3 0.1 3.1 2 0 0 2 2 2 0 Tetratricopeptide repeat HTH_20 PF12840.2 gi|433591532|ref|YP_007281028.1| - 6.3e-13 48.3 0.1 9.5e-13 47.7 0.1 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|433591532|ref|YP_007281028.1| - 1.3e-08 34.3 0.1 2.3e-08 33.5 0.0 1.5 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|433591532|ref|YP_007281028.1| - 2.2e-07 30.4 0.0 3.3e-07 29.8 0.0 1.3 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|433591532|ref|YP_007281028.1| - 1.5e-06 27.7 0.0 2.5e-06 27.0 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|433591532|ref|YP_007281028.1| - 4.9e-06 26.7 0.1 8.8e-06 25.9 0.1 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_34 PF13601.1 gi|433591532|ref|YP_007281028.1| - 1.9e-05 24.5 0.0 2.7e-05 24.0 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.14 gi|433591532|ref|YP_007281028.1| - 0.00073 19.1 0.0 0.0011 18.6 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB B-block_TFIIIC PF04182.7 gi|433591532|ref|YP_007281028.1| - 0.00083 19.1 0.0 0.0014 18.4 0.0 1.4 1 1 0 1 1 1 1 B-block binding subunit of TFIIIC TFIIE_alpha PF02002.12 gi|433591532|ref|YP_007281028.1| - 0.001 18.5 0.2 0.0013 18.2 0.1 1.2 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_24 PF13412.1 gi|433591532|ref|YP_007281028.1| - 0.0034 16.7 0.0 0.0057 16.0 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding DUF2513 PF10711.4 gi|433591532|ref|YP_007281028.1| - 0.0071 16.4 0.0 0.01 15.9 0.0 1.2 1 0 0 1 1 1 1 Hypothetical protein (DUF2513) HTH_11 PF08279.7 gi|433591532|ref|YP_007281028.1| - 0.023 14.3 0.0 0.032 13.8 0.0 1.2 1 0 0 1 1 1 0 HTH domain PadR PF03551.9 gi|433591532|ref|YP_007281028.1| - 0.051 13.3 0.2 0.09 12.5 0.1 1.5 1 1 0 1 1 1 0 Transcriptional regulator PadR-like family NifU PF01106.12 gi|433591534|ref|YP_007281030.1| - 2.2e-10 40.1 0.0 2.7e-10 39.8 0.0 1.1 1 0 0 1 1 1 1 NifU-like domain BolA PF01722.13 gi|433591535|ref|YP_007281031.1| - 1.4e-20 73.0 0.0 1.6e-20 72.8 0.0 1.1 1 0 0 1 1 1 1 BolA-like protein Usp PF00582.21 gi|433591536|ref|YP_007281032.1| - 5.3e-20 72.0 3.5 6.5e-20 71.7 2.4 1.1 1 0 0 1 1 1 1 Universal stress protein family bPH_2 PF03703.9 gi|433591537|ref|YP_007281033.1| - 4.7e-14 52.1 0.0 6.6e-14 51.6 0.0 1.2 1 0 0 1 1 1 1 Bacterial PH domain DUF4231 PF14015.1 gi|433591537|ref|YP_007281033.1| - 0.0049 16.8 2.0 0.0072 16.3 1.4 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF4231) O-antigen_lig PF13425.1 gi|433591537|ref|YP_007281033.1| - 0.25 11.3 2.4 0.36 10.8 1.7 1.2 1 0 0 1 1 1 0 O-antigen ligase like membrane protein Wzy_C PF04932.10 gi|433591537|ref|YP_007281033.1| - 0.66 9.7 3.1 0.71 9.6 1.7 1.3 1 1 0 1 1 1 0 O-Antigen ligase bPH_2 PF03703.9 gi|433591538|ref|YP_007281034.1| - 3.6e-54 180.6 2.3 1.2e-21 76.4 0.1 3.3 3 0 0 3 3 3 3 Bacterial PH domain bPH_4 PF06713.6 gi|433591538|ref|YP_007281034.1| - 1.2e-07 31.4 0.0 0.047 13.5 0.0 3.3 3 0 0 3 3 3 2 Bacterial PH domain bPH_3 PF14470.1 gi|433591538|ref|YP_007281034.1| - 0.00081 19.6 0.0 0.51 10.6 0.0 2.8 3 0 0 3 3 3 2 Bacterial PH domain DUF504 PF04457.7 gi|433591538|ref|YP_007281034.1| - 0.12 12.5 0.2 4.5 7.5 0.1 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF504) TadE PF07811.7 gi|433591538|ref|YP_007281034.1| - 4.3 7.2 9.0 0.7 9.8 0.6 3.4 3 0 0 3 3 3 0 TadE-like protein Lyase_1 PF00206.15 gi|433591539|ref|YP_007281035.1| - 3.1e-109 364.9 0.1 4.3e-109 364.4 0.1 1.2 1 0 0 1 1 1 1 Lyase FumaraseC_C PF10415.4 gi|433591539|ref|YP_007281035.1| - 1.4e-22 79.5 0.2 1.4e-22 79.5 0.2 2.2 2 0 0 2 2 2 1 Fumarase C C-terminus DUF21 PF01595.15 gi|433591540|ref|YP_007281036.1| - 6.4e-31 107.0 0.2 8.4e-31 106.6 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF21 CBS PF00571.23 gi|433591540|ref|YP_007281036.1| - 3.2e-15 55.6 0.1 3.8e-11 42.5 0.0 2.4 2 0 0 2 2 2 2 CBS domain DUF512 PF04459.7 gi|433591540|ref|YP_007281036.1| - 0.031 13.3 0.6 0.69 8.9 0.0 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF512) zf-C2H2_6 PF13912.1 gi|433591541|ref|YP_007281037.1| - 0.00011 21.9 8.0 0.0016 18.2 0.8 2.6 3 0 0 3 3 3 2 C2H2-type zinc finger zf-C2HC_2 PF13913.1 gi|433591541|ref|YP_007281037.1| - 0.0017 17.9 1.2 0.3 10.7 0.2 2.4 2 0 0 2 2 2 1 zinc-finger of a C2HC-type GATA PF00320.22 gi|433591541|ref|YP_007281037.1| - 0.012 14.9 1.7 0.054 12.8 1.2 1.9 1 1 0 1 1 1 0 GATA zinc finger Elf1 PF05129.8 gi|433591541|ref|YP_007281037.1| - 0.036 13.7 2.9 0.16 11.7 2.0 1.9 1 1 0 1 1 1 0 Transcription elongation factor Elf1 like FYVE PF01363.16 gi|433591541|ref|YP_007281037.1| - 0.039 13.8 2.1 0.046 13.6 1.4 1.3 1 0 0 1 1 1 0 FYVE zinc finger zf-C2H2 PF00096.21 gi|433591541|ref|YP_007281037.1| - 0.15 12.4 12.0 0.33 11.3 1.3 3.1 3 0 0 3 3 3 0 Zinc finger, C2H2 type zf-H2C2_2 PF13465.1 gi|433591541|ref|YP_007281037.1| - 0.16 12.3 4.7 8.4 6.8 0.1 3.2 3 0 0 3 3 3 0 Zinc-finger double domain zf-HIT PF04438.11 gi|433591541|ref|YP_007281037.1| - 0.3 10.7 4.1 9.4 5.9 0.1 3.0 3 0 0 3 3 3 0 HIT zinc finger C1_4 PF07975.7 gi|433591541|ref|YP_007281037.1| - 0.81 9.7 4.5 7.6 6.6 0.3 2.3 2 0 0 2 2 2 0 TFIIH C1-like domain DUF2318 PF10080.4 gi|433591541|ref|YP_007281037.1| - 0.86 9.4 3.4 4.9 6.9 0.2 2.1 1 1 1 2 2 2 0 Predicted membrane protein (DUF2318) zf-CHY PF05495.7 gi|433591541|ref|YP_007281037.1| - 1 9.5 6.1 1.5 9.0 4.2 1.3 1 0 0 1 1 1 0 CHY zinc finger zf-C3HC4_3 PF13920.1 gi|433591541|ref|YP_007281037.1| - 2 8.1 4.9 13 5.6 3.4 2.1 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) DZR PF12773.2 gi|433591541|ref|YP_007281037.1| - 2.3 8.1 6.5 9 6.2 4.5 2.0 1 1 0 1 1 1 0 Double zinc ribbon zf-C2H2_4 PF13894.1 gi|433591541|ref|YP_007281037.1| - 3.2 8.3 9.1 4.5 7.8 1.8 2.6 2 1 0 2 2 2 0 C2H2-type zinc finger zf-trcl PF13451.1 gi|433591541|ref|YP_007281037.1| - 3.5 7.3 6.9 3.3 7.4 0.5 2.4 2 1 0 2 2 2 0 Probable zinc-binding domain Prok-RING_1 PF14446.1 gi|433591541|ref|YP_007281037.1| - 3.9 7.2 6.3 3.1 7.6 0.2 2.7 3 0 0 3 3 3 0 Prokaryotic RING finger family 1 HypA PF01155.14 gi|433591541|ref|YP_007281037.1| - 6.4 6.4 7.1 12 5.5 1.4 2.0 1 1 1 2 2 2 0 Hydrogenase expression/synthesis hypA family Zn-ribbon_8 PF09723.5 gi|433591541|ref|YP_007281037.1| - 8.6 6.4 8.5 7.5 6.5 1.5 2.6 2 1 0 2 2 2 0 Zinc ribbon domain DICT PF10069.4 gi|433591542|ref|YP_007281038.1| - 1.3e-13 50.6 0.0 2.1e-13 49.9 0.0 1.3 1 0 0 1 1 1 1 Sensory domain found in DIguanylate Cyclases & Two-component systems bPH_2 PF03703.9 gi|433591544|ref|YP_007281040.1| - 4.5e-18 65.0 0.1 6.5e-18 64.5 0.1 1.2 1 0 0 1 1 1 1 Bacterial PH domain bPH_2 PF03703.9 gi|433591545|ref|YP_007281041.1| - 5.2e-47 157.7 2.8 1e-20 73.5 0.1 3.3 3 0 0 3 3 3 3 Bacterial PH domain DUF3040 PF11239.3 gi|433591545|ref|YP_007281041.1| - 9.5 6.3 13.3 2.2 8.3 0.2 3.4 3 0 0 3 3 3 0 Protein of unknown function (DUF3040) Phage_integrase PF00589.17 gi|433591546|ref|YP_007281042.1| - 3.3e-16 59.4 0.1 6.9e-16 58.3 0.1 1.5 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_1 PF02899.12 gi|433591546|ref|YP_007281042.1| - 1.2e-08 34.9 3.5 2.4e-08 34.0 0.5 2.7 3 0 0 3 3 3 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.1 gi|433591546|ref|YP_007281042.1| - 5.9e-07 29.7 0.2 1.4e-06 28.4 0.1 1.7 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain HemN_C PF06969.11 gi|433591547|ref|YP_007281043.1| - 0.073 13.1 0.9 0.12 12.3 0.6 1.4 1 0 0 1 1 1 0 HemN C-terminal domain Phage_integrase PF00589.17 gi|433591548|ref|YP_007281044.1| - 3.1e-18 66.0 0.0 4.9e-18 65.4 0.0 1.3 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_1 PF02899.12 gi|433591548|ref|YP_007281044.1| - 2.5e-05 24.3 1.3 9.7e-05 22.4 0.4 2.3 2 0 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.1 gi|433591548|ref|YP_007281044.1| - 0.00013 22.1 0.4 0.00079 19.6 0.4 2.1 1 1 1 2 2 2 2 Phage integrase, N-terminal SAM-like domain DUF2141 PF09912.4 gi|433591549|ref|YP_007281045.1| - 0.019 14.6 0.3 1.2 8.8 0.0 2.1 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2141) MreC PF04085.9 gi|433591549|ref|YP_007281045.1| - 0.12 11.7 0.1 0.15 11.5 0.0 1.2 1 0 0 1 1 1 0 rod shape-determining protein MreC GPI-anchored PF10342.4 gi|433591549|ref|YP_007281045.1| - 0.18 12.3 1.6 0.54 10.7 0.6 1.9 2 0 0 2 2 2 0 Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family PQQ_2 PF13360.1 gi|433591551|ref|YP_007281047.1| - 2.5e-35 122.0 4.4 5.9e-31 107.7 1.9 2.9 2 1 0 2 2 2 2 PQQ-like domain PQQ_3 PF13570.1 gi|433591551|ref|YP_007281047.1| - 4.3e-30 103.1 24.5 7.3e-07 29.2 0.0 8.6 9 0 0 9 9 9 7 PQQ-like domain PQQ PF01011.16 gi|433591551|ref|YP_007281047.1| - 8e-22 75.6 19.5 0.0019 17.6 0.2 7.8 9 1 0 9 9 9 6 PQQ enzyme repeat MTD PF01993.13 gi|433591551|ref|YP_007281047.1| - 0.16 10.9 0.0 0.24 10.3 0.0 1.2 1 0 0 1 1 1 0 methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase DUF3618 PF12277.3 gi|433591552|ref|YP_007281048.1| - 0.067 13.2 0.5 0.16 12.0 0.3 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3618) AAA_13 PF13166.1 gi|433591553|ref|YP_007281049.1| - 2.2e-09 36.4 2.7 4.2e-09 35.4 1.8 1.4 1 0 0 1 1 1 1 AAA domain IncA PF04156.9 gi|433591553|ref|YP_007281049.1| - 1.5e-08 34.5 10.2 2.1e-07 30.7 1.8 2.8 1 1 1 2 2 2 2 IncA protein Spc7 PF08317.6 gi|433591553|ref|YP_007281049.1| - 8.3e-08 31.2 5.0 0.0025 16.5 0.2 2.4 1 1 1 2 2 2 2 Spc7 kinetochore protein Laminin_II PF06009.7 gi|433591553|ref|YP_007281049.1| - 9.5e-07 28.6 7.9 0.00045 19.9 3.4 2.9 1 1 1 2 2 2 2 Laminin Domain II DUF1664 PF07889.7 gi|433591553|ref|YP_007281049.1| - 3.2e-06 26.9 14.7 0.0043 16.8 4.0 3.1 1 1 1 2 2 2 2 Protein of unknown function (DUF1664) Reo_sigmaC PF04582.7 gi|433591553|ref|YP_007281049.1| - 8.6e-06 25.1 8.0 1.8e-05 24.1 5.2 1.7 1 1 0 1 1 1 1 Reovirus sigma C capsid protein Laminin_I PF06008.9 gi|433591553|ref|YP_007281049.1| - 9.8e-06 25.0 1.5 0.014 14.7 0.2 2.5 1 1 1 2 2 2 2 Laminin Domain I TBPIP PF07106.8 gi|433591553|ref|YP_007281049.1| - 1.4e-05 24.7 6.9 0.0081 15.7 0.3 3.2 1 1 1 2 2 2 1 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) DivIC PF04977.10 gi|433591553|ref|YP_007281049.1| - 1.9e-05 24.0 13.3 0.09 12.2 0.4 3.9 1 1 2 3 3 3 3 Septum formation initiator Baculo_PEP_C PF04513.7 gi|433591553|ref|YP_007281049.1| - 2.5e-05 24.1 5.0 0.01 15.6 0.7 2.5 1 1 1 2 2 2 2 Baculovirus polyhedron envelope protein, PEP, C terminus NPV_P10 PF05531.7 gi|433591553|ref|YP_007281049.1| - 9.2e-05 22.6 28.3 0.018 15.2 6.1 4.5 1 1 2 3 3 3 2 Nucleopolyhedrovirus P10 protein CENP-F_leu_zip PF10473.4 gi|433591553|ref|YP_007281049.1| - 0.00014 21.7 20.2 0.001 18.9 3.9 3.6 2 1 1 3 3 3 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 EzrA PF06160.7 gi|433591553|ref|YP_007281049.1| - 0.00016 20.0 8.9 0.00073 17.8 5.8 1.7 1 1 0 1 1 1 1 Septation ring formation regulator, EzrA ADIP PF11559.3 gi|433591553|ref|YP_007281049.1| - 0.00047 20.0 0.0 0.1 12.5 0.0 2.4 1 1 1 2 2 2 1 Afadin- and alpha -actinin-Binding MscS_porin PF12795.2 gi|433591553|ref|YP_007281049.1| - 0.00053 19.3 0.5 0.0013 18.1 0.3 1.7 1 0 0 1 1 1 1 Mechanosensitive ion channel porin domain BLOC1_2 PF10046.4 gi|433591553|ref|YP_007281049.1| - 0.00061 19.8 10.0 0.034 14.2 1.0 3.5 1 1 2 3 3 3 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 APG6 PF04111.7 gi|433591553|ref|YP_007281049.1| - 0.00072 18.6 16.5 0.0025 16.9 4.6 3.0 2 1 1 3 3 3 2 Autophagy protein Apg6 FH2 PF02181.18 gi|433591553|ref|YP_007281049.1| - 0.00078 18.4 6.8 0.0037 16.2 2.0 2.2 2 0 0 2 2 2 1 Formin Homology 2 Domain COG2 PF06148.6 gi|433591553|ref|YP_007281049.1| - 0.0008 19.2 8.7 1.1 9.0 5.9 3.3 1 1 0 1 1 1 1 COG (conserved oligomeric Golgi) complex component, COG2 TMF_DNA_bd PF12329.3 gi|433591553|ref|YP_007281049.1| - 0.00097 18.8 9.4 0.37 10.6 1.3 4.2 1 1 2 4 4 4 1 TATA element modulatory factor 1 DNA binding Fib_alpha PF08702.5 gi|433591553|ref|YP_007281049.1| - 0.0012 18.9 0.8 0.005 16.9 0.5 2.2 1 1 0 1 1 1 1 Fibrinogen alpha/beta chain family Prefoldin_2 PF01920.15 gi|433591553|ref|YP_007281049.1| - 0.0013 18.4 10.0 0.46 10.2 2.4 4.3 1 1 0 2 2 2 1 Prefoldin subunit GAS PF13851.1 gi|433591553|ref|YP_007281049.1| - 0.0015 17.7 0.9 0.084 12.0 0.1 2.1 1 1 1 2 2 2 1 Growth-arrest specific micro-tubule binding Atg14 PF10186.4 gi|433591553|ref|YP_007281049.1| - 0.0019 17.2 0.0 0.0074 15.2 0.0 1.8 1 1 1 2 2 2 1 UV radiation resistance protein and autophagy-related subunit 14 Tropomyosin_1 PF12718.2 gi|433591553|ref|YP_007281049.1| - 0.0023 17.7 5.3 0.0023 17.7 3.7 4.6 3 1 1 4 4 2 2 Tropomyosin like TMF_TATA_bd PF12325.3 gi|433591553|ref|YP_007281049.1| - 0.0023 17.6 13.2 0.0029 17.3 0.8 3.3 1 1 1 2 2 2 1 TATA element modulatory factor 1 TATA binding FlaC_arch PF05377.6 gi|433591553|ref|YP_007281049.1| - 0.0032 17.3 17.2 0.18 11.6 2.8 4.0 1 1 1 3 3 3 1 Flagella accessory protein C (FlaC) THOC7 PF05615.8 gi|433591553|ref|YP_007281049.1| - 0.0033 17.6 0.5 0.099 12.9 0.1 2.3 1 1 1 2 2 2 1 Tho complex subunit 7 DUF972 PF06156.8 gi|433591553|ref|YP_007281049.1| - 0.0036 17.6 2.2 4.3 7.7 0.2 3.4 1 1 2 3 3 3 0 Protein of unknown function (DUF972) DUF2730 PF10805.3 gi|433591553|ref|YP_007281049.1| - 0.0043 16.7 9.0 0.11 12.2 0.6 3.6 1 1 1 3 3 3 1 Protein of unknown function (DUF2730) zf-C4H2 PF10146.4 gi|433591553|ref|YP_007281049.1| - 0.0044 17.0 4.6 0.0044 17.0 3.2 2.5 1 1 1 2 2 2 1 Zinc finger-containing protein DUF2968 PF11180.3 gi|433591553|ref|YP_007281049.1| - 0.0049 16.2 2.2 0.77 9.1 0.3 3.1 1 1 1 2 2 2 2 Protein of unknown function (DUF2968) Filament PF00038.16 gi|433591553|ref|YP_007281049.1| - 0.0063 16.0 10.5 0.031 13.7 3.0 2.6 1 1 1 2 2 2 1 Intermediate filament protein DUF2353 PF09789.4 gi|433591553|ref|YP_007281049.1| - 0.012 14.8 8.2 0.097 11.9 5.2 2.1 1 1 1 2 2 2 0 Uncharacterized coiled-coil protein (DUF2353) DUF4201 PF13870.1 gi|433591553|ref|YP_007281049.1| - 0.016 14.6 1.1 0.093 12.1 0.7 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4201) Prefoldin PF02996.12 gi|433591553|ref|YP_007281049.1| - 0.017 14.7 7.1 1.8 8.2 0.2 3.9 2 2 1 4 4 4 0 Prefoldin subunit DUF4618 PF15397.1 gi|433591553|ref|YP_007281049.1| - 0.017 14.4 3.7 0.42 9.8 0.5 2.7 1 1 2 3 3 3 0 Domain of unknown function (DUF4618) Bacillus_HBL PF05791.6 gi|433591553|ref|YP_007281049.1| - 0.02 14.2 3.5 0.15 11.3 0.3 2.6 1 1 2 3 3 3 0 Bacillus haemolytic enterotoxin (HBL) DUF4200 PF13863.1 gi|433591553|ref|YP_007281049.1| - 0.021 14.7 4.8 3.1 7.7 0.1 3.8 2 2 1 3 3 3 0 Domain of unknown function (DUF4200) Spectrin PF00435.16 gi|433591553|ref|YP_007281049.1| - 0.023 14.9 13.4 0.65 10.3 2.7 3.7 2 1 1 3 3 2 0 Spectrin repeat Mod_r PF07200.8 gi|433591553|ref|YP_007281049.1| - 0.03 14.2 5.5 0.29 11.0 0.6 2.7 1 1 1 2 2 2 0 Modifier of rudimentary (Mod(r)) protein V_ATPase_I PF01496.14 gi|433591553|ref|YP_007281049.1| - 0.03 12.1 5.0 0.068 11.0 3.3 1.6 1 1 0 1 1 1 0 V-type ATPase 116kDa subunit family Cortex-I_coil PF09304.5 gi|433591553|ref|YP_007281049.1| - 0.033 14.2 8.6 0.14 12.2 1.0 3.0 1 1 1 2 2 2 0 Cortexillin I, coiled coil CCDC144C PF14915.1 gi|433591553|ref|YP_007281049.1| - 0.06 12.2 3.2 0.23 10.3 2.2 1.8 1 1 0 1 1 1 0 CCDC144C protein coiled-coil region Sipho_Gp157 PF05565.6 gi|433591553|ref|YP_007281049.1| - 0.078 12.5 10.3 2.7 7.5 0.1 2.8 2 0 0 2 2 2 0 Siphovirus Gp157 Transposase_22 PF02994.9 gi|433591553|ref|YP_007281049.1| - 0.078 11.4 4.6 0.16 10.4 3.2 1.5 1 0 0 1 1 1 0 L1 transposable element RmuC PF02646.11 gi|433591553|ref|YP_007281049.1| - 0.095 11.5 0.2 4.9 5.9 0.0 2.8 1 1 3 4 4 4 0 RmuC family bZIP_1 PF00170.16 gi|433591553|ref|YP_007281049.1| - 0.14 12.1 0.1 28 4.7 0.0 3.6 2 1 1 3 3 3 0 bZIP transcription factor DUF4559 PF15112.1 gi|433591553|ref|YP_007281049.1| - 0.15 11.2 13.8 0.011 14.8 6.1 1.6 2 0 0 2 2 1 0 Domain of unknown function (DUF4559) Sec34 PF04136.10 gi|433591553|ref|YP_007281049.1| - 0.19 11.4 3.1 0.97 9.1 0.5 2.2 1 1 1 2 2 2 0 Sec34-like family Vps53_N PF04100.7 gi|433591553|ref|YP_007281049.1| - 0.19 10.4 14.2 0.25 10.0 0.4 2.1 2 0 0 2 2 2 0 Vps53-like, N-terminal Cluap1 PF10234.4 gi|433591553|ref|YP_007281049.1| - 0.23 10.6 4.7 2.7 7.1 1.5 3.0 1 1 1 2 2 2 0 Clusterin-associated protein-1 Prominin PF05478.6 gi|433591553|ref|YP_007281049.1| - 0.24 8.9 2.3 0.5 7.8 1.6 1.5 1 1 0 1 1 1 0 Prominin Syntaxin PF00804.20 gi|433591553|ref|YP_007281049.1| - 0.31 11.2 8.2 2.8 8.1 2.4 3.1 1 1 2 3 3 3 0 Syntaxin TMPIT PF07851.8 gi|433591553|ref|YP_007281049.1| - 0.31 10.0 0.8 0.61 9.1 0.4 1.5 1 1 1 2 2 2 0 TMPIT-like protein Snapin_Pallidin PF14712.1 gi|433591553|ref|YP_007281049.1| - 0.33 11.2 1.1 23 5.3 0.0 2.9 2 1 1 3 3 2 0 Snapin/Pallidin DUF16 PF01519.11 gi|433591553|ref|YP_007281049.1| - 0.42 10.8 6.3 1.9e+02 2.3 4.4 2.9 1 1 0 1 1 1 0 Protein of unknown function DUF16 DUF3450 PF11932.3 gi|433591553|ref|YP_007281049.1| - 0.51 9.5 8.2 0.28 10.3 0.7 2.9 2 1 1 3 3 2 0 Protein of unknown function (DUF3450) DASH_Dam1 PF08653.5 gi|433591553|ref|YP_007281049.1| - 0.54 10.0 5.7 1.5 8.6 0.0 3.6 3 1 0 4 4 2 0 DASH complex subunit Dam1 MAP65_ASE1 PF03999.7 gi|433591553|ref|YP_007281049.1| - 0.58 8.6 4.6 0.83 8.1 3.2 1.1 1 0 0 1 1 1 0 Microtubule associated protein (MAP65/ASE1 family) Rootletin PF15035.1 gi|433591553|ref|YP_007281049.1| - 0.61 10.0 5.0 4.8 7.1 3.0 2.5 1 1 0 1 1 1 0 Ciliary rootlet component, centrosome cohesion DUF948 PF06103.6 gi|433591553|ref|YP_007281049.1| - 1 9.2 17.3 0.65 9.8 2.7 3.6 2 1 1 3 3 2 0 Bacterial protein of unknown function (DUF948) DUF677 PF05055.7 gi|433591553|ref|YP_007281049.1| - 1.2 7.7 13.0 2.6 6.6 4.8 2.3 1 1 2 3 3 3 0 Protein of unknown function (DUF677) ORF6C PF10552.4 gi|433591553|ref|YP_007281049.1| - 1.3 8.7 4.6 47 3.7 0.9 3.8 1 1 2 3 3 3 0 ORF6C domain Lectin_N PF03954.9 gi|433591553|ref|YP_007281049.1| - 1.6 8.1 4.8 14 5.1 0.6 2.6 1 1 1 2 2 2 0 Hepatic lectin, N-terminal domain Seryl_tRNA_N PF02403.17 gi|433591553|ref|YP_007281049.1| - 1.7 8.6 18.3 6.3 6.8 0.3 4.5 2 1 1 4 4 3 0 Seryl-tRNA synthetase N-terminal domain Fez1 PF06818.10 gi|433591553|ref|YP_007281049.1| - 1.8 8.5 4.4 5.2 7.0 2.3 2.2 1 1 0 1 1 1 0 Fez1 SlyX PF04102.7 gi|433591553|ref|YP_007281049.1| - 2.7 8.4 12.5 1.9 8.9 0.7 3.7 1 1 4 5 5 5 0 SlyX TPR_MLP1_2 PF07926.7 gi|433591553|ref|YP_007281049.1| - 3.2 7.4 12.5 13 5.5 0.3 3.1 2 1 0 3 3 2 0 TPR/MLP1/MLP2-like protein DUF4446 PF14584.1 gi|433591553|ref|YP_007281049.1| - 4.3 7.1 6.0 18 5.1 0.3 3.2 2 1 2 4 4 3 0 Protein of unknown function (DUF4446) Ax_dynein_light PF10211.4 gi|433591553|ref|YP_007281049.1| - 6.7 6.5 7.8 12 5.7 0.1 3.4 2 1 2 4 4 3 0 Axonemal dynein light chain Nsp1_C PF05064.8 gi|433591553|ref|YP_007281049.1| - 9.9 5.8 12.7 16 5.1 4.1 3.0 1 1 2 3 3 3 0 Nsp1-like C-terminal region Lactamase_B_2 PF12706.2 gi|433591554|ref|YP_007281050.1| - 1.7e-17 63.6 0.9 2.2e-17 63.2 0.6 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|433591554|ref|YP_007281050.1| - 1.3e-11 44.4 0.1 1.7e-11 44.1 0.1 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|433591554|ref|YP_007281050.1| - 0.00084 19.0 14.6 0.0065 16.1 9.7 2.2 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily HTH_20 PF12840.2 gi|433591555|ref|YP_007281051.1| - 0.00025 20.7 13.5 0.00032 20.4 2.3 3.3 2 2 0 2 2 2 2 Helix-turn-helix domain Ribosomal_60s PF00428.14 gi|433591555|ref|YP_007281051.1| - 2 8.8 5.5 0.65 10.4 1.2 2.1 2 0 0 2 2 2 0 60s Acidic ribosomal protein Diphthamide_syn PF01866.12 gi|433591556|ref|YP_007281052.1| - 4.2e-93 311.9 0.0 4.8e-93 311.7 0.0 1.0 1 0 0 1 1 1 1 Putative diphthamide synthesis protein Hydrolase_4 PF12146.3 gi|433591556|ref|YP_007281052.1| - 0.01 15.6 0.0 0.25 11.2 0.0 2.3 2 0 0 2 2 2 0 Putative lysophospholipase HalX PF08663.5 gi|433591557|ref|YP_007281053.1| - 0.00011 22.1 1.4 0.001 19.0 0.9 2.3 1 1 0 1 1 1 1 HalX domain SpoIIIAH PF12685.2 gi|433591558|ref|YP_007281054.1| - 0.016 14.6 3.2 0.022 14.2 2.2 1.2 1 0 0 1 1 1 0 SpoIIIAH-like protein DUF4396 PF14342.1 gi|433591558|ref|YP_007281054.1| - 0.051 13.6 2.1 0.089 12.8 1.5 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4396) DUF1282 PF06930.7 gi|433591558|ref|YP_007281054.1| - 0.91 9.1 13.2 0.87 9.2 1.4 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1282) Grp1_Fun34_YaaH PF01184.14 gi|433591558|ref|YP_007281054.1| - 1.7 7.9 7.8 13 5.0 5.4 2.1 1 1 1 2 2 2 0 GPR1/FUN34/yaaH family NfeD PF01957.13 gi|433591558|ref|YP_007281054.1| - 5.6 7.0 10.7 0.54 10.3 1.0 2.3 1 1 1 2 2 2 0 NfeD-like C-terminal, partner-binding MreB_Mbl PF06723.8 gi|433591559|ref|YP_007281055.1| - 2.8e-05 22.8 0.0 0.015 13.8 0.0 2.4 2 1 0 2 2 2 2 MreB/Mbl protein Actin PF00022.14 gi|433591559|ref|YP_007281055.1| - 0.0018 16.7 0.0 0.45 8.8 0.0 2.2 2 0 0 2 2 2 2 Actin zf-FPG_IleRS PF06827.9 gi|433591560|ref|YP_007281056.1| - 1.5e-06 27.6 1.0 2.3e-06 27.0 0.7 1.2 1 0 0 1 1 1 1 Zinc finger found in FPG and IleRS zf-ribbon_3 PF13248.1 gi|433591560|ref|YP_007281056.1| - 4.8e-05 22.4 1.7 0.0061 15.7 0.0 2.2 2 0 0 2 2 2 1 zinc-ribbon domain Lar_restr_allev PF14354.1 gi|433591560|ref|YP_007281056.1| - 0.00066 19.9 1.6 0.0011 19.2 1.1 1.4 1 1 0 1 1 1 1 Restriction alleviation protein Lar Zn-ribbon_8 PF09723.5 gi|433591560|ref|YP_007281056.1| - 0.0011 18.9 2.4 0.0034 17.3 1.6 1.8 1 1 0 1 1 1 1 Zinc ribbon domain zf-TFIIB PF13453.1 gi|433591560|ref|YP_007281056.1| - 0.0016 17.5 1.9 0.0024 17.0 1.3 1.3 1 0 0 1 1 1 1 Transcription factor zinc-finger IBR PF01485.16 gi|433591560|ref|YP_007281056.1| - 0.0022 17.8 0.2 0.0029 17.4 0.2 1.2 1 0 0 1 1 1 1 IBR domain DZR PF12773.2 gi|433591560|ref|YP_007281056.1| - 0.0034 17.1 0.4 0.0051 16.5 0.3 1.3 1 1 0 1 1 1 1 Double zinc ribbon OrfB_Zn_ribbon PF07282.6 gi|433591560|ref|YP_007281056.1| - 0.0034 16.9 0.3 0.0046 16.5 0.2 1.2 1 0 0 1 1 1 1 Putative transposase DNA-binding domain UPF0547 PF10571.4 gi|433591560|ref|YP_007281056.1| - 0.0043 16.7 3.9 0.011 15.4 2.7 1.7 1 1 0 1 1 1 1 Uncharacterised protein family UPF0547 zinc_ribbon_2 PF13240.1 gi|433591560|ref|YP_007281056.1| - 0.0069 15.8 3.4 0.29 10.6 0.1 2.2 2 0 0 2 2 2 1 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|433591560|ref|YP_007281056.1| - 0.0076 16.0 3.6 0.17 11.7 0.1 2.2 1 1 1 2 2 2 1 Transposase zinc-ribbon domain zf-C4_Topoisom PF01396.14 gi|433591560|ref|YP_007281056.1| - 0.014 14.8 1.6 3.4 7.2 0.0 2.2 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger RNHCP PF12647.2 gi|433591560|ref|YP_007281056.1| - 0.022 14.5 0.4 0.022 14.5 0.3 1.1 1 0 0 1 1 1 0 RNHCP domain DNA_RNApol_7kD PF03604.8 gi|433591560|ref|YP_007281056.1| - 0.024 14.1 1.0 0.044 13.2 0.7 1.4 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit zf-ISL3 PF14690.1 gi|433591560|ref|YP_007281056.1| - 0.025 14.6 3.6 0.77 9.8 0.7 2.4 2 1 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Cys_rich_CPXG PF14255.1 gi|433591560|ref|YP_007281056.1| - 0.045 13.5 1.6 2.5 8.0 0.2 2.2 2 0 0 2 2 2 0 Cysteine-rich CPXCG zf-RING_3 PF14369.1 gi|433591560|ref|YP_007281056.1| - 0.068 13.1 6.6 0.49 10.4 0.5 2.3 1 1 1 2 2 2 0 zinc-finger DUF329 PF03884.9 gi|433591560|ref|YP_007281056.1| - 0.085 12.4 0.5 4.9 6.7 0.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF329) zf-Di19 PF05605.7 gi|433591560|ref|YP_007281056.1| - 0.088 12.9 0.7 1.1 9.4 0.1 2.1 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding Nudix_N_2 PF14803.1 gi|433591560|ref|YP_007281056.1| - 0.11 12.2 2.9 0.66 9.7 1.6 2.1 1 1 1 2 2 2 0 Nudix N-terminal YhfH PF14149.1 gi|433591560|ref|YP_007281056.1| - 0.15 11.9 1.8 2.9 7.7 0.1 2.1 2 0 0 2 2 2 0 YhfH-like protein DUF35_N PF12172.3 gi|433591560|ref|YP_007281056.1| - 0.18 11.7 2.1 11 6.0 0.1 2.2 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-NADH-PPase PF09297.6 gi|433591560|ref|YP_007281056.1| - 0.22 11.0 3.8 1.1 8.8 0.2 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain CpXC PF14353.1 gi|433591560|ref|YP_007281056.1| - 0.27 11.2 1.4 0.38 10.7 0.0 1.8 1 1 1 2 2 2 0 CpXC protein zinc_ribbon_5 PF13719.1 gi|433591560|ref|YP_007281056.1| - 0.31 10.6 4.0 6.3 6.4 2.8 2.1 1 1 0 1 1 1 0 zinc-ribbon domain zf-IS66 PF13005.2 gi|433591560|ref|YP_007281056.1| - 0.34 10.9 6.6 1.8 8.5 0.3 2.3 1 1 1 2 2 2 0 zinc-finger binding domain of transposase IS66 zinc_ribbon_4 PF13717.1 gi|433591560|ref|YP_007281056.1| - 0.39 10.4 4.1 7.5 6.3 2.8 2.1 1 1 0 1 1 1 0 zinc-ribbon domain Zn_Tnp_IS1 PF03811.8 gi|433591560|ref|YP_007281056.1| - 0.53 9.8 3.5 3.3 7.2 0.3 2.2 2 0 0 2 2 2 0 InsA N-terminal domain DNA_ligase_ZBD PF03119.11 gi|433591560|ref|YP_007281056.1| - 0.57 9.9 3.9 3.4 7.4 0.0 2.3 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain DUF164 PF02591.10 gi|433591560|ref|YP_007281056.1| - 0.66 9.8 0.1 0.66 9.8 0.1 2.0 1 1 1 2 2 2 0 Putative zinc ribbon domain TF_Zn_Ribbon PF08271.7 gi|433591560|ref|YP_007281056.1| - 0.73 9.1 3.7 5 6.5 2.6 2.1 1 1 1 2 2 2 0 TFIIB zinc-binding DUF1610 PF07754.6 gi|433591560|ref|YP_007281056.1| - 0.81 9.8 5.9 1.9 8.6 0.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) AP_endonuc_2 PF01261.19 gi|433591561|ref|YP_007281057.1| - 0.014 14.6 0.2 0.017 14.4 0.1 1.1 1 0 0 1 1 1 0 Xylose isomerase-like TIM barrel Methyltransf_26 PF13659.1 gi|433591562|ref|YP_007281058.1| - 2.4e-14 53.3 0.3 4.2e-14 52.5 0.2 1.4 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|433591562|ref|YP_007281058.1| - 1.1e-11 44.4 0.4 1.7e-11 43.8 0.3 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) MTS PF05175.9 gi|433591562|ref|YP_007281058.1| - 1e-10 41.2 0.0 2e-10 40.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_18 PF12847.2 gi|433591562|ref|YP_007281058.1| - 6.9e-09 36.2 0.7 1.6e-08 35.1 0.4 1.5 1 1 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|433591562|ref|YP_007281058.1| - 8.5e-08 31.9 0.0 1.4e-07 31.2 0.0 1.3 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_31 PF13847.1 gi|433591562|ref|YP_007281058.1| - 5.1e-06 26.1 0.1 8.5e-06 25.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|433591562|ref|YP_007281058.1| - 0.00016 21.9 0.0 0.00032 21.0 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|433591562|ref|YP_007281058.1| - 0.00021 21.0 0.0 0.00023 20.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|433591562|ref|YP_007281058.1| - 0.00028 21.3 0.0 0.00055 20.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|433591562|ref|YP_007281058.1| - 0.0094 15.3 0.0 0.013 14.9 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_3 PF01596.12 gi|433591562|ref|YP_007281058.1| - 0.028 13.4 0.0 0.039 13.0 0.0 1.2 1 0 0 1 1 1 0 O-methyltransferase N6_Mtase PF02384.11 gi|433591562|ref|YP_007281058.1| - 0.039 13.0 0.0 0.053 12.5 0.0 1.2 1 0 0 1 1 1 0 N-6 DNA Methylase LEH PF07858.7 gi|433591562|ref|YP_007281058.1| - 0.047 13.6 0.0 0.95 9.4 0.0 2.3 1 1 1 2 2 2 0 Limonene-1,2-epoxide hydrolase catalytic domain Methyltransf_32 PF13679.1 gi|433591562|ref|YP_007281058.1| - 0.055 13.1 0.0 0.081 12.6 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Met_10 PF02475.11 gi|433591562|ref|YP_007281058.1| - 0.061 12.9 0.0 0.12 11.9 0.0 1.4 1 0 0 1 1 1 0 Met-10+ like-protein PCMT PF01135.14 gi|433591562|ref|YP_007281058.1| - 0.14 11.6 0.0 0.19 11.2 0.0 1.1 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_12 PF08242.7 gi|433591562|ref|YP_007281058.1| - 0.15 12.5 0.1 0.29 11.6 0.1 1.5 1 0 0 1 1 1 0 Methyltransferase domain Rhomboid PF01694.17 gi|433591563|ref|YP_007281059.1| - 3.6e-06 27.0 17.5 0.0013 18.7 6.4 3.3 3 0 0 3 3 3 2 Rhomboid family RNA_pol_L_2 PF13656.1 gi|433591564|ref|YP_007281060.1| - 1.2e-19 69.5 0.0 1.4e-19 69.2 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain RNA_pol_L PF01193.19 gi|433591564|ref|YP_007281060.1| - 1.1e-08 34.0 0.0 1.5e-08 33.6 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain NOB1_Zn_bind PF08772.6 gi|433591565|ref|YP_007281061.1| - 6.2e-06 25.9 0.9 0.04 13.7 0.0 2.5 2 0 0 2 2 2 2 Nin one binding (NOB1) Zn-ribbon like zinc_ribbon_2 PF13240.1 gi|433591565|ref|YP_007281061.1| - 0.00058 19.2 19.5 0.06 12.8 4.2 2.4 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.2 gi|433591565|ref|YP_007281061.1| - 0.0012 18.6 10.5 0.004 16.9 7.2 1.9 1 1 0 1 1 1 1 Double zinc ribbon zf-C2HC5 PF06221.8 gi|433591565|ref|YP_007281061.1| - 0.03 14.0 2.5 0.94 9.2 0.1 2.4 2 0 0 2 2 2 0 Putative zinc finger motif, C2HC5-type zf-ribbon_3 PF13248.1 gi|433591565|ref|YP_007281061.1| - 0.056 12.6 16.1 0.58 9.4 2.3 2.7 2 1 0 2 2 2 0 zinc-ribbon domain Ribosomal_L37e PF01907.14 gi|433591565|ref|YP_007281061.1| - 0.21 11.4 6.5 2.2 8.1 0.1 2.7 2 1 0 2 2 2 0 Ribosomal protein L37e NCD3G PF07562.9 gi|433591565|ref|YP_007281061.1| - 0.87 9.3 9.3 1.9 8.2 0.5 2.3 2 0 0 2 2 2 0 Nine Cysteines Domain of family 3 GPCR DUF1451 PF07295.6 gi|433591565|ref|YP_007281061.1| - 0.97 9.1 8.0 3.1 7.5 0.8 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1451) Zn-ribbon_8 PF09723.5 gi|433591565|ref|YP_007281061.1| - 1.4 8.8 13.1 8.1 6.4 1.5 3.8 2 2 0 2 2 2 0 Zinc ribbon domain Lar_restr_allev PF14354.1 gi|433591565|ref|YP_007281061.1| - 2 8.7 9.3 0.59 10.4 0.4 3.2 1 1 2 3 3 3 0 Restriction alleviation protein Lar Nudix_N_2 PF14803.1 gi|433591565|ref|YP_007281061.1| - 2.8 7.7 9.4 46 3.8 0.1 4.2 4 0 0 4 4 4 0 Nudix N-terminal zf-MYND PF01753.13 gi|433591565|ref|YP_007281061.1| - 3.8 7.4 11.5 1.5 8.7 1.0 2.3 2 0 0 2 2 2 0 MYND finger Copper-fist PF00649.13 gi|433591565|ref|YP_007281061.1| - 5.1 6.3 7.7 11 5.2 0.6 2.8 3 0 0 3 3 3 0 Copper fist DNA binding domain SprT-like PF10263.4 gi|433591565|ref|YP_007281061.1| - 8.5 6.0 6.3 1.6 8.3 0.3 2.1 1 1 1 2 2 2 0 SprT-like family His_biosynth PF00977.16 gi|433591566|ref|YP_007281062.1| - 9.6e-79 263.8 0.1 1.1e-78 263.6 0.0 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein Dus PF01207.12 gi|433591566|ref|YP_007281062.1| - 6.5e-09 35.0 0.0 5.2e-06 25.5 0.0 2.1 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) NMO PF03060.10 gi|433591566|ref|YP_007281062.1| - 6e-06 25.6 0.5 0.00073 18.7 0.1 2.1 2 0 0 2 2 2 2 Nitronate monooxygenase ThiG PF05690.9 gi|433591566|ref|YP_007281062.1| - 1e-05 24.7 0.1 0.0051 15.9 0.0 2.2 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG PcrB PF01884.12 gi|433591566|ref|YP_007281062.1| - 0.00012 21.4 0.1 0.00024 20.4 0.1 1.5 1 0 0 1 1 1 1 PcrB family DHO_dh PF01180.16 gi|433591566|ref|YP_007281062.1| - 0.00094 18.2 0.2 0.0033 16.4 0.0 1.8 2 0 0 2 2 2 1 Dihydroorotate dehydrogenase G3P_antiterm PF04309.7 gi|433591566|ref|YP_007281062.1| - 0.0058 15.6 0.1 0.0093 15.0 0.0 1.2 1 0 0 1 1 1 1 Glycerol-3-phosphate responsive antiterminator TMP-TENI PF02581.12 gi|433591566|ref|YP_007281062.1| - 0.0093 15.0 0.1 0.22 10.6 0.0 2.2 2 0 0 2 2 2 1 Thiamine monophosphate synthase/TENI Glu_synthase PF01645.12 gi|433591566|ref|YP_007281062.1| - 0.024 13.5 0.0 0.036 12.9 0.0 1.2 1 0 0 1 1 1 0 Conserved region in glutamate synthase FMN_dh PF01070.13 gi|433591566|ref|YP_007281062.1| - 0.028 13.2 0.1 0.053 12.3 0.1 1.4 1 0 0 1 1 1 0 FMN-dependent dehydrogenase PEP_mutase PF13714.1 gi|433591566|ref|YP_007281062.1| - 0.04 13.1 0.4 0.28 10.3 0.0 2.4 2 1 0 2 2 2 0 Phosphoenolpyruvate phosphomutase IMPDH PF00478.20 gi|433591566|ref|YP_007281062.1| - 0.055 12.3 0.1 0.055 12.3 0.0 1.4 2 0 0 2 2 2 0 IMP dehydrogenase / GMP reductase domain IGPS PF00218.16 gi|433591566|ref|YP_007281062.1| - 0.13 11.2 0.0 0.68 8.9 0.0 2.0 2 0 0 2 2 2 0 Indole-3-glycerol phosphate synthase DUF3561 PF12084.3 gi|433591567|ref|YP_007281063.1| - 0.024 14.4 0.0 0.026 14.3 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3561) PDGLE PF13190.1 gi|433591567|ref|YP_007281063.1| - 0.033 13.8 0.3 0.036 13.7 0.2 1.1 1 0 0 1 1 1 0 PDGLE domain MFS_3 PF05977.8 gi|433591567|ref|YP_007281063.1| - 0.48 8.4 2.6 0.53 8.3 1.8 1.0 1 0 0 1 1 1 0 Transmembrane secretion effector IclR PF01614.13 gi|433591568|ref|YP_007281064.1| - 0.038 13.6 0.0 0.047 13.3 0.0 1.1 1 0 0 1 1 1 0 Bacterial transcriptional regulator InaF-motif PF15018.1 gi|433591569|ref|YP_007281065.1| - 4.8 6.7 5.7 8.6 5.9 3.9 1.3 1 0 0 1 1 1 0 TRP-interacting helix Oxidored_molyb PF00174.14 gi|433591570|ref|YP_007281066.1| - 3e-45 153.6 0.0 3.7e-45 153.3 0.0 1.0 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain TetR_N PF00440.18 gi|433591570|ref|YP_007281066.1| - 0.018 14.6 0.0 0.046 13.3 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family Chorismate_bind PF00425.13 gi|433591571|ref|YP_007281067.1| - 1.6e-75 253.7 0.0 2.1e-75 253.4 0.0 1.1 1 0 0 1 1 1 1 chorismate binding enzyme TPP_enzyme_N PF02776.13 gi|433591572|ref|YP_007281068.1| - 5e-32 110.7 0.1 1.3e-31 109.3 0.0 1.7 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.16 gi|433591572|ref|YP_007281068.1| - 2.4e-06 27.1 0.0 5.3e-06 26.0 0.0 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.17 gi|433591572|ref|YP_007281068.1| - 0.0093 15.7 0.0 0.03 14.0 0.0 1.9 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, central domain DnaJ PF00226.26 gi|433591573|ref|YP_007281069.1| - 2.4e-19 68.8 0.2 3.7e-19 68.2 0.2 1.3 1 0 0 1 1 1 1 DnaJ domain RPT PF13446.1 gi|433591573|ref|YP_007281069.1| - 0.058 12.8 0.1 0.1 12.0 0.1 1.4 1 0 0 1 1 1 0 A repeated domain in UCH-protein TrmB PF01978.14 gi|433591575|ref|YP_007281071.1| - 5.1e-17 61.3 0.1 9.7e-17 60.4 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|433591575|ref|YP_007281071.1| - 0.00014 21.4 0.1 0.00043 19.8 0.0 1.8 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|433591575|ref|YP_007281071.1| - 0.00026 20.5 0.1 0.00084 18.8 0.1 1.9 1 0 0 1 1 1 1 IclR helix-turn-helix domain Regulator_TrmB PF11495.3 gi|433591575|ref|YP_007281071.1| - 0.034 13.1 0.1 0.044 12.7 0.0 1.3 1 0 0 1 1 1 0 Archaeal transcriptional regulator TrmB DUF2250 PF10007.4 gi|433591575|ref|YP_007281071.1| - 0.042 13.7 0.0 0.077 12.9 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) Amidinotransf PF02274.12 gi|433591575|ref|YP_007281071.1| - 0.049 12.7 0.0 0.07 12.2 0.0 1.2 1 0 0 1 1 1 0 Amidinotransferase HTH_27 PF13463.1 gi|433591575|ref|YP_007281071.1| - 0.052 13.8 0.0 0.17 12.2 0.0 1.9 1 0 0 1 1 1 0 Winged helix DNA-binding domain Toprim_3 PF13362.1 gi|433591575|ref|YP_007281071.1| - 0.055 13.7 0.3 0.25 11.6 0.2 2.1 1 1 0 1 1 1 0 Toprim domain HTH_29 PF13551.1 gi|433591575|ref|YP_007281071.1| - 0.1 12.7 0.7 0.35 11.0 0.2 2.1 1 1 1 2 2 2 0 Winged helix-turn helix MMPL PF03176.10 gi|433591576|ref|YP_007281072.1| - 4.4e-39 134.1 53.5 2.2e-19 69.3 20.5 3.5 2 2 0 2 2 2 2 MMPL family Sterol-sensing PF12349.3 gi|433591576|ref|YP_007281072.1| - 5.2e-14 51.9 9.1 8.8e-08 31.7 1.8 2.5 2 0 0 2 2 2 2 Sterol-sensing domain of SREBP cleavage-activation Patched PF02460.13 gi|433591576|ref|YP_007281072.1| - 2.6e-12 45.5 21.0 3.2e-07 28.6 5.0 2.6 3 0 0 3 3 3 2 Patched family SecD_SecF PF02355.11 gi|433591576|ref|YP_007281072.1| - 1.9e-06 27.1 21.1 0.00051 19.2 5.3 2.3 2 0 0 2 2 2 2 Protein export membrane protein ECH PF00378.15 gi|433591577|ref|YP_007281073.1| - 1.7e-47 161.6 0.0 2e-47 161.3 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family Iron_transport PF10634.4 gi|433591578|ref|YP_007281074.1| - 0.001 18.9 0.0 0.038 13.8 0.0 2.2 2 0 0 2 2 2 2 Fe2+ transport protein UbiA PF01040.13 gi|433591579|ref|YP_007281075.1| - 2.3e-45 154.8 17.9 2.8e-45 154.5 12.4 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family MR_MLE PF01188.16 gi|433591580|ref|YP_007281076.1| - 2.5e-15 56.7 0.5 2.5e-15 56.7 0.3 2.3 3 0 0 3 3 3 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain MR_MLE_C PF13378.1 gi|433591580|ref|YP_007281076.1| - 5.1e-12 45.7 3.3 9.9e-12 44.8 1.7 1.9 2 0 0 2 2 2 1 Enolase C-terminal domain-like MR_MLE_N PF02746.11 gi|433591580|ref|YP_007281076.1| - 0.027 14.4 0.1 0.19 11.7 0.1 2.4 1 1 0 1 1 1 0 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AMP-binding PF00501.23 gi|433591581|ref|YP_007281077.1| - 3.1e-83 279.5 0.6 3.6e-83 279.2 0.4 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|433591581|ref|YP_007281077.1| - 7.7e-16 58.8 0.3 2e-15 57.5 0.2 1.8 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain BCCT PF02028.12 gi|433591582|ref|YP_007281078.1| - 3.5e-114 381.7 45.4 4e-114 381.5 31.5 1.0 1 0 0 1 1 1 1 BCCT family transporter NRDE PF05742.7 gi|433591583|ref|YP_007281079.1| - 3e-20 72.6 0.0 1.5e-18 67.0 0.0 2.1 1 1 0 1 1 1 1 NRDE protein MarR PF01047.17 gi|433591584|ref|YP_007281080.1| - 0.0001 21.9 0.0 0.00014 21.4 0.0 1.2 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.2 gi|433591584|ref|YP_007281080.1| - 0.00077 19.0 0.0 0.0012 18.4 0.0 1.3 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|433591584|ref|YP_007281080.1| - 0.0049 16.5 0.1 0.0068 16.0 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB B-block_TFIIIC PF04182.7 gi|433591584|ref|YP_007281080.1| - 0.012 15.4 0.0 0.017 14.9 0.0 1.2 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC HTH_27 PF13463.1 gi|433591584|ref|YP_007281080.1| - 0.035 14.4 0.0 0.053 13.8 0.0 1.4 1 1 0 1 1 1 0 Winged helix DNA-binding domain Amidase PF01425.16 gi|433591586|ref|YP_007281082.1| - 8.9e-143 476.3 0.2 1.1e-142 476.0 0.2 1.0 1 0 0 1 1 1 1 Amidase Glu-tRNAGln PF02686.10 gi|433591587|ref|YP_007281083.1| - 5.6e-19 67.7 0.6 1e-18 66.8 0.4 1.5 1 0 0 1 1 1 1 Glu-tRNAGln amidotransferase C subunit TFIIB PF00382.14 gi|433591588|ref|YP_007281084.1| - 7.1e-41 137.8 0.2 1.1e-20 73.2 0.0 2.2 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|433591588|ref|YP_007281084.1| - 9.1e-15 53.7 2.9 3.2e-14 51.9 2.2 1.8 2 0 0 2 2 2 1 TFIIB zinc-binding zf-C4_Topoisom PF01396.14 gi|433591588|ref|YP_007281084.1| - 0.031 13.7 0.4 0.053 13.0 0.3 1.3 1 0 0 1 1 1 0 Topoisomerase DNA binding C4 zinc finger DZR PF12773.2 gi|433591588|ref|YP_007281084.1| - 0.08 12.7 1.0 0.15 11.9 0.7 1.3 1 0 0 1 1 1 0 Double zinc ribbon Cyclin_C PF02984.14 gi|433591588|ref|YP_007281084.1| - 0.15 12.0 0.0 2.4 8.1 0.0 2.2 2 0 0 2 2 2 0 Cyclin, C-terminal domain RNA_POL_M_15KD PF02150.11 gi|433591588|ref|YP_007281084.1| - 0.15 11.7 0.3 0.27 10.9 0.2 1.4 1 0 0 1 1 1 0 RNA polymerases M/15 Kd subunit Prok-RING_1 PF14446.1 gi|433591588|ref|YP_007281084.1| - 0.22 11.2 2.1 0.35 10.6 1.4 1.3 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 OrfB_Zn_ribbon PF07282.6 gi|433591588|ref|YP_007281084.1| - 0.51 10.0 2.1 0.77 9.4 0.8 1.7 2 0 0 2 2 2 0 Putative transposase DNA-binding domain DNA_ligase_ZBD PF03119.11 gi|433591588|ref|YP_007281084.1| - 0.62 9.8 5.8 0.11 12.2 1.1 2.0 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Nudix_N_2 PF14803.1 gi|433591588|ref|YP_007281084.1| - 0.75 9.5 4.2 2.3 8.0 2.9 1.8 1 1 0 1 1 1 0 Nudix N-terminal Zn-ribbon_8 PF09723.5 gi|433591588|ref|YP_007281084.1| - 9.8 6.2 6.3 3.2 7.7 0.7 2.3 1 1 1 2 2 2 0 Zinc ribbon domain zf-FCS PF06467.9 gi|433591589|ref|YP_007281085.1| - 0.0048 16.5 0.3 0.0094 15.5 0.2 1.5 1 1 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif DUF3330 PF11809.3 gi|433591589|ref|YP_007281085.1| - 0.017 14.9 0.8 0.018 14.8 0.5 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3330) Ogr_Delta PF04606.7 gi|433591589|ref|YP_007281085.1| - 0.074 12.7 0.2 0.08 12.6 0.1 1.2 1 0 0 1 1 1 0 Ogr/Delta-like zinc finger Cu-oxidase_3 PF07732.10 gi|433591590|ref|YP_007281086.1| - 2.3e-08 33.7 0.0 1.6e-07 31.0 0.0 2.2 2 1 0 2 2 2 1 Multicopper oxidase Cu-oxidase_2 PF07731.9 gi|433591590|ref|YP_007281086.1| - 8.7e-07 28.5 0.1 3.2e-06 26.7 0.0 2.1 2 1 0 2 2 2 1 Multicopper oxidase Copper-bind PF00127.15 gi|433591590|ref|YP_007281086.1| - 0.06 13.5 0.0 0.18 12.0 0.0 1.8 2 0 0 2 2 2 0 Copper binding proteins, plastocyanin/azurin family YbgS PF13985.1 gi|433591590|ref|YP_007281086.1| - 0.23 11.3 1.4 0.42 10.5 1.0 1.4 1 0 0 1 1 1 0 YbgS-like protein Abhydrolase_6 PF12697.2 gi|433591591|ref|YP_007281087.1| - 7.6e-36 124.1 10.8 9.7e-36 123.7 7.5 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|433591591|ref|YP_007281087.1| - 6e-20 71.7 0.0 9.4e-20 71.1 0.0 1.3 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_5 PF12695.2 gi|433591591|ref|YP_007281087.1| - 1.2e-16 60.7 0.0 2.5e-16 59.7 0.0 1.5 1 1 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.3 gi|433591591|ref|YP_007281087.1| - 7.6e-05 22.4 0.0 0.00014 21.6 0.0 1.5 1 0 0 1 1 1 1 Putative lysophospholipase DLH PF01738.13 gi|433591591|ref|YP_007281087.1| - 0.00015 21.0 0.0 0.017 14.3 0.0 2.8 2 1 0 2 2 2 1 Dienelactone hydrolase family Peptidase_S9 PF00326.16 gi|433591591|ref|YP_007281087.1| - 0.00052 19.2 0.1 0.38 9.9 0.0 2.5 2 1 0 2 2 2 2 Prolyl oligopeptidase family AXE1 PF05448.7 gi|433591591|ref|YP_007281087.1| - 0.0099 14.4 0.0 0.27 9.6 0.0 2.1 1 1 1 2 2 2 1 Acetyl xylan esterase (AXE1) Peptidase_S15 PF02129.13 gi|433591591|ref|YP_007281087.1| - 0.011 15.1 0.1 0.014 14.8 0.0 1.3 1 0 0 1 1 1 0 X-Pro dipeptidyl-peptidase (S15 family) Esterase PF00756.15 gi|433591591|ref|YP_007281087.1| - 0.022 14.1 0.0 0.048 13.0 0.0 1.6 1 1 0 1 1 1 0 Putative esterase PGAP1 PF07819.8 gi|433591591|ref|YP_007281087.1| - 0.039 13.5 0.0 0.058 12.9 0.0 1.2 1 0 0 1 1 1 0 PGAP1-like protein DUF3054 PF11255.3 gi|433591592|ref|YP_007281088.1| - 4e-21 74.9 11.4 5.1e-21 74.6 7.9 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3054) CoA_binding_3 PF13727.1 gi|433591592|ref|YP_007281088.1| - 0.01 15.6 0.6 0.01 15.6 0.4 1.5 2 0 0 2 2 2 0 CoA-binding domain 7tm_1 PF00001.16 gi|433591592|ref|YP_007281088.1| - 0.79 8.8 6.8 0.3 10.1 0.4 2.3 2 1 1 3 3 3 0 7 transmembrane receptor (rhodopsin family) TrbC PF04956.8 gi|433591592|ref|YP_007281088.1| - 2 8.4 11.8 1.1 9.2 0.5 2.4 3 0 0 3 3 3 0 TrbC/VIRB2 family DUF3353 PF11833.3 gi|433591592|ref|YP_007281088.1| - 2.4 7.5 4.3 4 6.8 3.0 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF3353) E1-E2_ATPase PF00122.15 gi|433591593|ref|YP_007281089.1| - 7.6e-44 149.4 1.9 1.3e-43 148.6 1.3 1.4 1 0 0 1 1 1 1 E1-E2 ATPase Hydrolase PF00702.21 gi|433591593|ref|YP_007281089.1| - 1e-33 117.5 8.1 2.1e-33 116.5 5.1 2.0 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|433591593|ref|YP_007281089.1| - 1.8e-09 38.0 0.0 4.5e-09 36.7 0.0 1.8 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase ATPase-cat_bd PF12156.3 gi|433591593|ref|YP_007281089.1| - 4.7e-05 23.8 0.4 0.00015 22.1 0.4 1.8 2 0 0 2 2 2 1 Putative metal-binding domain of cation transport ATPase HMA PF00403.21 gi|433591593|ref|YP_007281089.1| - 5.2e-05 23.3 0.0 0.00018 21.5 0.0 2.0 1 0 0 1 1 1 1 Heavy-metal-associated domain Hydrolase_3 PF08282.7 gi|433591593|ref|YP_007281089.1| - 0.00036 20.2 0.3 0.00053 19.6 0.2 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Sigma70_ner PF04546.8 gi|433591594|ref|YP_007281090.1| - 0.23 11.0 1.8 0.34 10.5 1.3 1.3 1 0 0 1 1 1 0 Sigma-70, non-essential region DUF2298 PF10060.4 gi|433591595|ref|YP_007281091.1| - 0.0037 16.1 0.1 0.0047 15.8 0.1 1.1 1 0 0 1 1 1 1 Uncharacterized membrane protein (DUF2298) COX2 PF00116.15 gi|433591596|ref|YP_007281092.1| - 9.4e-16 57.7 0.0 1.2e-15 57.4 0.0 1.1 1 0 0 1 1 1 1 Cytochrome C oxidase subunit II, periplasmic domain DsbD PF02683.10 gi|433591598|ref|YP_007281094.1| - 1.3e-11 44.4 14.9 1.8e-11 44.0 10.3 1.1 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region Redoxin PF08534.5 gi|433591599|ref|YP_007281095.1| - 4.3e-12 45.7 0.0 5e-12 45.5 0.0 1.1 1 0 0 1 1 1 1 Redoxin AhpC-TSA PF00578.16 gi|433591599|ref|YP_007281095.1| - 4.9e-07 29.4 0.0 5.8e-07 29.2 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Thioredoxin_8 PF13905.1 gi|433591599|ref|YP_007281095.1| - 2e-05 24.6 0.0 3e-05 24.0 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin-like Thioredoxin_2 PF13098.1 gi|433591599|ref|YP_007281095.1| - 0.0003 20.9 0.0 0.00036 20.6 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin-like domain Thioredoxin PF00085.15 gi|433591599|ref|YP_007281095.1| - 0.00041 19.9 0.0 0.007 16.0 0.0 2.0 2 0 0 2 2 2 1 Thioredoxin SCO1-SenC PF02630.9 gi|433591600|ref|YP_007281096.1| - 8.7e-10 38.4 0.0 1.1e-08 34.9 0.0 2.0 1 1 0 1 1 1 1 SCO1/SenC AhpC-TSA PF00578.16 gi|433591600|ref|YP_007281096.1| - 0.032 13.9 0.0 0.055 13.1 0.0 1.6 1 1 0 1 1 1 0 AhpC/TSA family Redoxin PF08534.5 gi|433591600|ref|YP_007281096.1| - 0.1 12.1 0.0 0.8 9.2 0.0 2.1 2 0 0 2 2 2 0 Redoxin DUF4611 PF15387.1 gi|433591600|ref|YP_007281096.1| - 0.26 11.4 1.5 0.54 10.4 1.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4611) TAT_signal PF10518.4 gi|433591600|ref|YP_007281096.1| - 2.3 8.4 6.0 0.17 11.9 0.6 1.8 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence Copper-bind PF00127.15 gi|433591601|ref|YP_007281097.1| - 3.9e-05 23.7 0.0 5.4e-05 23.3 0.0 1.2 1 0 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family TAT_signal PF10518.4 gi|433591601|ref|YP_007281097.1| - 0.063 13.3 0.7 0.11 12.5 0.5 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence UbiA PF01040.13 gi|433591602|ref|YP_007281098.1| - 7.1e-25 87.6 30.1 7.1e-25 87.6 20.8 3.2 2 1 1 3 3 3 2 UbiA prenyltransferase family COX15-CtaA PF02628.10 gi|433591602|ref|YP_007281098.1| - 1.1e-14 54.0 9.0 1.1e-14 54.0 6.3 2.8 2 1 0 2 2 2 1 Cytochrome oxidase assembly protein DUF4131 PF13567.1 gi|433591602|ref|YP_007281098.1| - 0.16 11.3 0.1 0.16 11.3 0.0 5.0 1 1 2 4 4 4 0 Domain of unknown function (DUF4131) DUF2249 PF10006.4 gi|433591603|ref|YP_007281099.1| - 2.5e-16 58.9 0.6 3.3e-16 58.6 0.4 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2249) TusA PF01206.12 gi|433591603|ref|YP_007281099.1| - 0.0021 17.6 0.0 0.0032 17.0 0.0 1.3 1 0 0 1 1 1 1 Sulfurtransferase TusA MAP1B_neuraxin PF00414.12 gi|433591603|ref|YP_007281099.1| - 0.0052 16.0 0.2 0.0052 16.0 0.1 2.0 2 0 0 2 2 2 1 Neuraxin and MAP1B repeat DUF2249 PF10006.4 gi|433591604|ref|YP_007281100.1| - 5.6e-25 86.7 1.1 6.2e-25 86.5 0.8 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2249) DUF2249 PF10006.4 gi|433591605|ref|YP_007281101.1| - 2.1e-20 72.0 1.5 2.4e-20 71.8 1.0 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2249) HTH_10 PF04967.7 gi|433591606|ref|YP_007281102.1| - 1e-18 66.6 0.1 2.7e-18 65.2 0.0 1.7 2 0 0 2 2 2 1 HTH DNA binding domain MarR_2 PF12802.2 gi|433591606|ref|YP_007281102.1| - 0.0016 18.0 0.0 0.0055 16.3 0.0 2.0 2 0 0 2 2 2 1 MarR family HTH_IclR PF09339.5 gi|433591606|ref|YP_007281102.1| - 0.0042 16.6 0.4 0.057 13.0 0.0 2.5 2 0 0 2 2 2 1 IclR helix-turn-helix domain PilN PF05137.8 gi|433591606|ref|YP_007281102.1| - 0.0097 15.7 0.0 0.14 11.9 0.0 2.3 2 1 0 2 2 2 1 Fimbrial assembly protein (PilN) HTH_24 PF13412.1 gi|433591606|ref|YP_007281102.1| - 0.01 15.1 0.2 0.021 14.2 0.0 1.6 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding Phage_CI_repr PF07022.8 gi|433591606|ref|YP_007281102.1| - 0.011 15.7 0.0 0.025 14.6 0.0 1.5 1 0 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain HTH_Tnp_Tc3_2 PF01498.13 gi|433591606|ref|YP_007281102.1| - 0.023 14.7 0.1 12 6.0 0.1 3.0 3 0 0 3 3 3 0 Transposase HTH_29 PF13551.1 gi|433591606|ref|YP_007281102.1| - 0.037 14.1 0.2 0.13 12.4 0.2 1.9 1 1 1 2 2 2 0 Winged helix-turn helix Fe_dep_repress PF01325.14 gi|433591606|ref|YP_007281102.1| - 0.069 13.0 0.0 0.26 11.2 0.0 1.9 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain PuR_N PF09182.5 gi|433591606|ref|YP_007281102.1| - 0.07 12.7 0.0 0.15 11.6 0.0 1.6 1 0 0 1 1 1 0 Bacterial purine repressor, N-terminal HTH_AsnC-type PF13404.1 gi|433591606|ref|YP_007281102.1| - 0.084 12.4 0.4 0.51 9.9 0.0 2.2 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain Fer4_11 PF13247.1 gi|433591607|ref|YP_007281103.1| - 7.7e-18 64.2 16.9 4.7e-16 58.4 3.9 3.1 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|433591607|ref|YP_007281103.1| - 2.8e-15 56.4 23.0 8.2e-06 26.1 1.1 4.4 3 1 1 4 4 4 4 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|433591607|ref|YP_007281103.1| - 3.3e-13 49.6 20.3 7.1e-10 39.0 3.2 3.1 2 2 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|433591607|ref|YP_007281103.1| - 5.8e-11 42.0 21.4 2.1e-06 27.4 3.0 3.3 2 2 1 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|433591607|ref|YP_007281103.1| - 2.6e-09 36.4 31.9 2.9e-05 23.7 1.5 4.6 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4 PF00037.22 gi|433591607|ref|YP_007281103.1| - 2.9e-08 32.9 32.9 0.00011 21.6 2.4 5.1 5 0 0 5 5 5 3 4Fe-4S binding domain Fer4_6 PF12837.2 gi|433591607|ref|YP_007281103.1| - 6e-08 32.2 32.7 0.00061 19.5 2.1 4.5 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_8 PF13183.1 gi|433591607|ref|YP_007281103.1| - 2.8e-05 24.0 22.3 0.035 14.1 6.1 3.5 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|433591607|ref|YP_007281103.1| - 0.0013 18.9 23.5 0.048 14.0 3.8 4.4 2 2 3 5 5 5 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|433591607|ref|YP_007281103.1| - 0.0015 18.7 2.6 0.0015 18.7 1.8 4.5 4 1 0 4 4 4 2 4Fe-4S binding domain Fer4_3 PF12798.2 gi|433591607|ref|YP_007281103.1| - 0.0072 16.8 40.2 0.35 11.5 3.8 4.4 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_21 PF14697.1 gi|433591607|ref|YP_007281103.1| - 0.013 15.3 24.5 0.21 11.4 6.7 3.6 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|433591607|ref|YP_007281103.1| - 0.24 12.1 28.1 1.9 9.3 2.0 4.5 2 1 4 6 6 6 0 4Fe-4S double cluster binding domain Fer4_18 PF13746.1 gi|433591607|ref|YP_007281103.1| - 0.39 11.1 28.4 0.31 11.4 2.4 5.0 3 2 1 4 4 4 0 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|433591607|ref|YP_007281103.1| - 0.62 10.6 23.7 0.13 12.7 0.8 4.7 4 1 1 5 5 5 0 4Fe-4S single cluster domain NrfD PF03916.9 gi|433591608|ref|YP_007281104.1| - 2e-21 76.7 22.2 4.5e-21 75.5 15.4 1.5 1 0 0 1 1 1 1 Polysulphide reductase, NrfD PgaD PF13994.1 gi|433591608|ref|YP_007281104.1| - 0.66 9.4 7.6 14 5.1 2.4 2.9 3 0 0 3 3 3 0 PgaD-like protein SirB PF04247.7 gi|433591609|ref|YP_007281105.1| - 0.061 13.0 0.5 0.072 12.8 0.4 1.3 1 0 0 1 1 1 0 Invasion gene expression up-regulator, SirB DUF3292 PF11696.3 gi|433591609|ref|YP_007281105.1| - 0.081 10.7 0.4 0.089 10.6 0.3 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3292) DUF3649 PF12365.3 gi|433591609|ref|YP_007281105.1| - 0.46 10.0 0.1 0.46 10.0 0.0 2.8 4 0 0 4 4 4 0 Protein of unknown function (DUF3649) Oleosin PF01277.12 gi|433591609|ref|YP_007281105.1| - 0.84 9.2 3.9 0.36 10.4 0.6 1.8 1 1 1 2 2 2 0 Oleosin Yip1 PF04893.12 gi|433591609|ref|YP_007281105.1| - 3.4 7.1 11.2 2.8 7.4 6.6 1.5 1 1 1 2 2 2 0 Yip1 domain Lig_chan PF00060.21 gi|433591609|ref|YP_007281105.1| - 5.2 6.7 5.7 5.8 6.6 0.1 2.1 2 0 0 2 2 2 0 Ligand-gated ion channel ParA PF10609.4 gi|433591610|ref|YP_007281106.1| - 1.1e-34 118.1 0.1 1.8e-34 117.4 0.1 1.3 1 0 0 1 1 1 1 ParA/MinD ATPase like CbiA PF01656.18 gi|433591610|ref|YP_007281106.1| - 1.9e-19 69.8 0.0 3.3e-19 69.0 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|433591610|ref|YP_007281106.1| - 1.3e-09 38.1 0.0 1.7e-07 31.3 0.0 2.2 2 0 0 2 2 2 1 AAA domain DUF59 PF01883.14 gi|433591610|ref|YP_007281106.1| - 1.8e-08 34.2 0.3 7.7e-08 32.2 0.1 2.1 2 0 0 2 2 2 1 Domain of unknown function DUF59 ArsA_ATPase PF02374.10 gi|433591610|ref|YP_007281106.1| - 3e-07 29.7 1.1 0.00017 20.7 0.2 2.9 2 1 1 3 3 3 1 Anion-transporting ATPase AAA_26 PF13500.1 gi|433591610|ref|YP_007281106.1| - 7.8e-05 22.3 0.1 0.39 10.2 0.0 2.4 2 0 0 2 2 2 2 AAA domain MipZ PF09140.6 gi|433591610|ref|YP_007281106.1| - 0.00011 21.4 0.2 0.00023 20.3 0.1 1.7 1 1 0 1 1 1 1 ATPase MipZ VirC1 PF07015.6 gi|433591610|ref|YP_007281106.1| - 0.0012 17.9 0.0 0.0021 17.1 0.0 1.4 1 0 0 1 1 1 1 VirC1 protein SRP54 PF00448.17 gi|433591610|ref|YP_007281106.1| - 0.0031 16.9 0.1 0.0051 16.2 0.1 1.2 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain YhjQ PF06564.7 gi|433591610|ref|YP_007281106.1| - 0.0052 16.1 0.2 0.057 12.7 0.2 2.0 2 0 0 2 2 2 1 YhjQ protein AAA_17 PF13207.1 gi|433591610|ref|YP_007281106.1| - 0.039 14.7 0.0 0.1 13.4 0.0 1.8 1 1 0 1 1 1 0 AAA domain Fer4_NifH PF00142.13 gi|433591610|ref|YP_007281106.1| - 0.042 13.0 0.0 0.15 11.1 0.1 1.7 2 0 0 2 2 2 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family APS_kinase PF01583.15 gi|433591610|ref|YP_007281106.1| - 0.044 13.4 0.0 0.083 12.5 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_25 PF13481.1 gi|433591610|ref|YP_007281106.1| - 0.055 12.8 0.0 0.093 12.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain T6SS_Vgr PF13296.1 gi|433591610|ref|YP_007281106.1| - 0.071 12.9 0.0 0.18 11.6 0.0 1.6 2 0 0 2 2 1 0 Putative type VI secretion system Rhs element Vgr Ubie_methyltran PF01209.13 gi|433591610|ref|YP_007281106.1| - 0.17 10.9 0.0 0.29 10.2 0.0 1.3 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family AAA_18 PF13238.1 gi|433591610|ref|YP_007281106.1| - 0.31 11.3 2.6 1.1 9.5 0.1 2.5 2 1 1 3 3 2 0 AAA domain AAA_19 PF13245.1 gi|433591610|ref|YP_007281106.1| - 3.8 7.3 7.6 2.2 8.0 0.3 2.7 3 1 0 3 3 2 0 Part of AAA domain Cupin_2 PF07883.6 gi|433591611|ref|YP_007281107.1| - 2.1e-10 39.9 2.1 2.9e-10 39.5 1.4 1.2 1 0 0 1 1 1 1 Cupin domain DUF1637 PF07847.7 gi|433591611|ref|YP_007281107.1| - 0.00011 21.6 0.0 0.00011 21.6 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1637) CDO_I PF05995.7 gi|433591611|ref|YP_007281107.1| - 0.0023 17.1 0.1 0.0028 16.8 0.1 1.2 1 0 0 1 1 1 1 Cysteine dioxygenase type I MannoseP_isomer PF01050.13 gi|433591611|ref|YP_007281107.1| - 0.026 14.1 0.0 0.03 13.9 0.0 1.1 1 0 0 1 1 1 0 Mannose-6-phosphate isomerase Asn_synthase PF00733.16 gi|433591612|ref|YP_007281108.1| - 6.3e-41 140.5 1.4 1.3e-40 139.5 1.0 1.4 1 1 0 1 1 1 1 Asparagine synthase NAD_synthase PF02540.12 gi|433591612|ref|YP_007281108.1| - 0.022 13.6 0.0 0.042 12.7 0.0 1.4 1 0 0 1 1 1 0 NAD synthase tRNA_Me_trans PF03054.11 gi|433591612|ref|YP_007281108.1| - 0.036 12.6 0.0 0.05 12.1 0.0 1.2 1 0 0 1 1 1 0 tRNA methyl transferase PHP_C PF13263.1 gi|433591613|ref|YP_007281109.1| - 8.2e-22 76.4 1.0 3.9e-21 74.2 0.6 2.0 2 0 0 2 2 2 1 PHP-associated PHP PF02811.14 gi|433591613|ref|YP_007281109.1| - 7.1e-18 64.9 0.0 2.1e-17 63.4 0.0 1.7 1 1 0 1 1 1 1 PHP domain AIRS PF00586.19 gi|433591614|ref|YP_007281110.1| - 2.5e-41 139.8 7.2 4.9e-25 87.6 0.3 2.7 2 0 0 2 2 2 2 AIR synthase related protein, N-terminal domain AIRS_C PF02769.17 gi|433591614|ref|YP_007281110.1| - 3.6e-40 137.4 9.2 1e-28 100.2 0.6 3.2 3 0 0 3 3 3 2 AIR synthase related protein, C-terminal domain GHMP_kinases_C PF08544.8 gi|433591614|ref|YP_007281110.1| - 0.094 12.9 1.6 0.52 10.5 0.0 2.6 2 0 0 2 2 2 0 GHMP kinases C terminal Response_reg PF00072.19 gi|433591615|ref|YP_007281111.1| - 2.5e-19 69.3 1.5 2.8e-19 69.1 0.4 1.5 2 0 0 2 2 2 1 Response regulator receiver domain HalX PF08663.5 gi|433591615|ref|YP_007281111.1| - 5e-19 68.0 7.2 5e-19 68.0 5.0 1.8 2 0 0 2 2 2 1 HalX domain PAS_4 PF08448.5 gi|433591616|ref|YP_007281112.1| - 2.2e-22 79.1 8.9 5e-13 49.0 0.2 3.3 3 0 0 3 3 3 2 PAS fold PAS_9 PF13426.1 gi|433591616|ref|YP_007281112.1| - 3.9e-17 62.5 0.2 3.9e-07 30.3 0.0 2.6 2 0 0 2 2 2 2 PAS domain PAS PF00989.19 gi|433591616|ref|YP_007281112.1| - 4.9e-13 48.8 0.1 3.6e-05 23.4 0.0 2.6 2 0 0 2 2 2 2 PAS fold GAF_3 PF13492.1 gi|433591616|ref|YP_007281112.1| - 3.3e-12 46.6 0.0 1.2e-11 44.8 0.0 2.0 2 0 0 2 2 2 1 GAF domain GAF_2 PF13185.1 gi|433591616|ref|YP_007281112.1| - 2.6e-11 44.2 0.8 8.5e-11 42.5 0.1 2.3 2 0 0 2 2 2 1 GAF domain PAS_8 PF13188.1 gi|433591616|ref|YP_007281112.1| - 2e-09 36.9 0.1 0.0025 17.6 0.0 3.1 2 0 0 2 2 2 2 PAS domain HATPase_c PF02518.21 gi|433591616|ref|YP_007281112.1| - 4.8e-07 29.4 0.0 1e-06 28.4 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_10 PF13596.1 gi|433591616|ref|YP_007281112.1| - 0.00059 20.0 0.1 1.8 8.9 0.0 3.0 3 0 0 3 3 3 2 PAS domain HATPase_c_2 PF13581.1 gi|433591616|ref|YP_007281112.1| - 0.024 14.3 0.0 0.11 12.2 0.0 2.2 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain GAF PF01590.21 gi|433591616|ref|YP_007281112.1| - 0.071 13.2 3.4 0.071 13.2 0.0 2.8 3 1 0 3 3 3 0 GAF domain HisKA PF00512.20 gi|433591616|ref|YP_007281112.1| - 0.44 10.5 4.9 0.89 9.5 0.1 2.8 2 0 0 2 2 2 0 His Kinase A (phospho-acceptor) domain MerR-DNA-bind PF09278.6 gi|433591616|ref|YP_007281112.1| - 1.9 8.9 7.1 0.37 11.2 1.7 2.3 2 0 0 2 2 2 0 MerR, DNA binding PRA-PH PF01503.12 gi|433591616|ref|YP_007281112.1| - 2.5 8.4 12.3 3.5 7.9 2.9 3.3 3 0 0 3 3 3 0 Phosphoribosyl-ATP pyrophosphohydrolase PhaG_MnhG_YufB PF03334.9 gi|433591617|ref|YP_007281113.1| - 0.017 15.1 0.8 0.021 14.8 0.5 1.1 1 0 0 1 1 1 0 Na+/H+ antiporter subunit DUF3742 PF12553.3 gi|433591617|ref|YP_007281113.1| - 0.15 12.5 1.6 8.4 6.9 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3742) IncA PF04156.9 gi|433591617|ref|YP_007281113.1| - 0.17 11.4 0.5 0.19 11.2 0.4 1.2 1 0 0 1 1 1 0 IncA protein DUF1049 PF06305.6 gi|433591617|ref|YP_007281113.1| - 0.97 8.9 5.3 0.098 12.1 0.6 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1049) Aminotran_1_2 PF00155.16 gi|433591618|ref|YP_007281114.1| - 1.9e-72 244.2 0.0 2.2e-72 244.0 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|433591618|ref|YP_007281114.1| - 4.9e-09 35.7 0.0 9.6e-09 34.7 0.0 1.4 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.14 gi|433591618|ref|YP_007281114.1| - 8e-06 24.8 0.0 1.3e-05 24.1 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.12 gi|433591618|ref|YP_007281114.1| - 0.058 12.4 0.0 0.099 11.6 0.0 1.4 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family AsnC_trans_reg PF01037.16 gi|433591619|ref|YP_007281115.1| - 5.2e-14 51.6 0.1 1.1e-13 50.6 0.1 1.5 1 0 0 1 1 1 1 AsnC family HTH_AsnC-type PF13404.1 gi|433591619|ref|YP_007281115.1| - 1.2e-05 24.7 0.7 2.8e-05 23.5 0.3 1.7 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.1 gi|433591619|ref|YP_007281115.1| - 2.1e-05 23.7 0.1 5e-05 22.6 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|433591619|ref|YP_007281115.1| - 0.00014 21.4 0.2 0.00026 20.5 0.1 1.4 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|433591619|ref|YP_007281115.1| - 0.00065 19.9 0.0 0.033 14.4 0.0 2.7 2 1 0 2 2 2 1 Winged helix DNA-binding domain HTH_20 PF12840.2 gi|433591619|ref|YP_007281115.1| - 0.005 16.6 0.8 0.0087 15.8 0.2 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain FeoC PF09012.5 gi|433591619|ref|YP_007281115.1| - 0.0069 16.0 0.0 0.012 15.3 0.0 1.3 1 0 0 1 1 1 1 FeoC like transcriptional regulator TrmB PF01978.14 gi|433591619|ref|YP_007281115.1| - 0.01 15.4 0.2 0.019 14.6 0.2 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB She9_MDM33 PF05546.6 gi|433591619|ref|YP_007281115.1| - 0.017 14.6 0.4 0.062 12.8 0.1 2.0 2 1 1 3 3 3 0 She9 / Mdm33 family DUF2250 PF10007.4 gi|433591619|ref|YP_007281115.1| - 0.025 14.4 0.0 0.043 13.7 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) CENP-T PF15511.1 gi|433591620|ref|YP_007281116.1| - 4.8 6.3 23.9 6.1 5.9 16.6 1.2 1 0 0 1 1 1 0 Centromere kinetochore component CENP-T AhpC-TSA PF00578.16 gi|433591621|ref|YP_007281117.1| - 1.2e-16 60.5 0.0 1.5e-16 60.2 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|433591621|ref|YP_007281117.1| - 2.7e-13 49.6 0.0 3.2e-13 49.4 0.0 1.1 1 0 0 1 1 1 1 Redoxin Thioredoxin_2 PF13098.1 gi|433591621|ref|YP_007281117.1| - 0.00017 21.7 0.0 0.00024 21.2 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_8 PF13905.1 gi|433591621|ref|YP_007281117.1| - 0.0012 18.9 0.0 0.0016 18.5 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin-like TatD_DNase PF01026.16 gi|433591621|ref|YP_007281117.1| - 0.016 14.4 0.0 0.021 14.0 0.0 1.1 1 0 0 1 1 1 0 TatD related DNase GSHPx PF00255.14 gi|433591621|ref|YP_007281117.1| - 0.046 13.0 0.0 0.063 12.6 0.0 1.2 1 0 0 1 1 1 0 Glutathione peroxidase HpcH_HpaI PF03328.9 gi|433591622|ref|YP_007281118.1| - 1.3e-33 115.8 0.0 1.5e-33 115.5 0.0 1.0 1 0 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family DUF2376 PF09550.5 gi|433591622|ref|YP_007281118.1| - 0.14 12.3 1.4 0.32 11.1 0.0 2.4 3 0 0 3 3 3 0 Conserved hypothetical phage protein (DUF2376) Oxidored_FMN PF00724.15 gi|433591623|ref|YP_007281119.1| - 3.1e-69 233.5 0.0 3.8e-69 233.2 0.0 1.1 1 0 0 1 1 1 1 NADH:flavin oxidoreductase / NADH oxidase family Dus PF01207.12 gi|433591623|ref|YP_007281119.1| - 0.0052 15.6 0.0 0.0087 14.9 0.0 1.3 1 0 0 1 1 1 1 Dihydrouridine synthase (Dus) BtpA PF03437.10 gi|433591624|ref|YP_007281120.1| - 5.8e-80 268.2 1.0 6.8e-80 267.9 0.7 1.0 1 0 0 1 1 1 1 BtpA family Trp_syntA PF00290.15 gi|433591624|ref|YP_007281120.1| - 0.004 15.7 0.1 0.0074 14.8 0.0 1.5 1 0 0 1 1 1 1 Tryptophan synthase alpha chain Asp_Glu_race PF01177.17 gi|433591624|ref|YP_007281120.1| - 0.0078 16.1 3.3 0.017 15.0 2.3 1.6 1 1 0 1 1 1 1 Asp/Glu/Hydantoin racemase DUF2125 PF09898.4 gi|433591624|ref|YP_007281120.1| - 0.012 14.9 2.6 0.019 14.2 1.8 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2125) FlpD PF02662.11 gi|433591624|ref|YP_007281120.1| - 0.019 14.6 0.4 8.2 6.1 0.0 2.7 3 0 0 3 3 3 0 Methyl-viologen-reducing hydrogenase, delta subunit Qn_am_d_aIII PF09099.5 gi|433591624|ref|YP_007281120.1| - 0.049 13.9 2.8 0.084 13.1 0.6 2.4 2 0 0 2 2 2 0 Quinohemoprotein amine dehydrogenase, alpha subunit domain III PcrB PF01884.12 gi|433591624|ref|YP_007281120.1| - 0.62 9.2 6.8 1.6 7.9 0.2 2.8 2 1 1 3 3 3 0 PcrB family TctA PF01970.11 gi|433591625|ref|YP_007281121.1| - 2.7e-60 203.9 49.1 3.2e-60 203.7 34.0 1.1 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter TctA family Trep_Strep PF09605.5 gi|433591626|ref|YP_007281122.1| - 0.034 13.8 2.1 0.041 13.5 1.4 1.1 1 0 0 1 1 1 0 Hypothetical bacterial integral membrane protein (Trep_Strep) DUF3114 PF11311.3 gi|433591626|ref|YP_007281122.1| - 0.12 11.6 0.1 0.12 11.7 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3114) Ribosomal_60s PF00428.14 gi|433591629|ref|YP_007281125.1| - 2.2e-12 47.1 22.8 3.5e-12 46.5 15.8 1.3 1 1 0 1 1 1 1 60s Acidic ribosomal protein NOA36 PF06524.7 gi|433591629|ref|YP_007281125.1| - 0.79 8.9 9.2 0.88 8.7 6.4 1.1 1 0 0 1 1 1 0 NOA36 protein Cwf_Cwc_15 PF04889.7 gi|433591629|ref|YP_007281125.1| - 1.7 8.2 7.2 1.9 8.1 5.0 1.2 1 0 0 1 1 1 0 Cwf15/Cwc15 cell cycle control protein CDC45 PF02724.9 gi|433591629|ref|YP_007281125.1| - 3.2 5.6 7.3 3.3 5.6 5.1 1.0 1 0 0 1 1 1 0 CDC45-like protein DUF2457 PF10446.4 gi|433591629|ref|YP_007281125.1| - 3.8 6.1 13.5 3.8 6.1 9.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2457) Ribosomal_L10 PF00466.15 gi|433591630|ref|YP_007281126.1| - 1.7e-24 85.5 0.0 3.3e-24 84.7 0.0 1.4 1 0 0 1 1 1 1 Ribosomal protein L10 Ribosomal_60s PF00428.14 gi|433591630|ref|YP_007281126.1| - 0.0011 19.3 13.4 0.0011 19.3 9.3 3.2 4 0 0 4 4 4 1 60s Acidic ribosomal protein CobT PF06213.7 gi|433591630|ref|YP_007281126.1| - 3.3 6.7 21.4 5.1 6.1 14.5 1.4 1 1 0 1 1 1 0 Cobalamin biosynthesis protein CobT RNA_pol_3_Rpc31 PF11705.3 gi|433591630|ref|YP_007281126.1| - 3.7 7.4 17.3 6.6 6.5 12.0 1.3 1 0 0 1 1 1 0 DNA-directed RNA polymerase III subunit Rpc31 Ribosomal_L1 PF00687.16 gi|433591631|ref|YP_007281127.1| - 2.2e-42 144.8 0.0 2.6e-42 144.6 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L1p/L10e family VKOR PF07884.9 gi|433591632|ref|YP_007281128.1| - 0.86 9.4 7.7 0.17 11.7 1.9 2.2 1 1 2 3 3 3 0 Vitamin K epoxide reductase family Ribosomal_L11 PF00298.14 gi|433591633|ref|YP_007281129.1| - 3e-22 78.5 0.0 4.3e-22 78.0 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L11, RNA binding domain Ribosomal_L11_N PF03946.9 gi|433591633|ref|YP_007281129.1| - 1.1e-19 69.5 0.1 1.7e-19 69.0 0.1 1.3 1 0 0 1 1 1 1 Ribosomal protein L11, N-terminal domain CutA1 PF03091.10 gi|433591634|ref|YP_007281130.1| - 5.8e-25 86.9 0.0 6.2e-25 86.8 0.0 1.0 1 0 0 1 1 1 1 CutA1 divalent ion tolerance protein NDUF_C2 PF06374.6 gi|433591634|ref|YP_007281130.1| - 0.024 14.6 0.0 0.027 14.4 0.0 1.2 1 0 0 1 1 1 0 NADH-ubiquinone oxidoreductase subunit b14.5b (NDUFC2) LDB19 PF13002.2 gi|433591635|ref|YP_007281131.1| - 0.052 13.0 0.0 0.061 12.8 0.0 1.0 1 0 0 1 1 1 0 Arrestin_N terminal like PhnA_Zn_Ribbon PF08274.7 gi|433591635|ref|YP_007281131.1| - 1.5 8.7 4.7 11 5.8 0.4 2.3 2 0 0 2 2 2 0 PhnA Zinc-Ribbon PEPCK_ATP PF01293.15 gi|433591636|ref|YP_007281132.1| - 3.5e-62 210.4 0.0 7.2e-62 209.4 0.0 1.5 1 1 0 1 1 1 1 Phosphoenolpyruvate carboxykinase Baculo_PEP_C PF04513.7 gi|433591637|ref|YP_007281133.1| - 4.7e-19 68.5 49.5 0.0018 18.1 0.3 9.0 2 1 7 9 9 8 7 Baculovirus polyhedron envelope protein, PEP, C terminus AAA_13 PF13166.1 gi|433591637|ref|YP_007281133.1| - 2.8e-17 62.5 24.1 2.1e-07 29.8 1.8 3.3 1 1 1 3 3 3 3 AAA domain NPV_P10 PF05531.7 gi|433591637|ref|YP_007281133.1| - 2.7e-15 56.3 60.6 0.0079 16.4 1.0 12.7 1 1 9 12 12 12 4 Nucleopolyhedrovirus P10 protein DUF1664 PF07889.7 gi|433591637|ref|YP_007281133.1| - 2.3e-14 53.2 44.7 0.016 14.9 0.4 9.7 1 1 11 12 12 12 9 Protein of unknown function (DUF1664) Reo_sigmaC PF04582.7 gi|433591637|ref|YP_007281133.1| - 8.2e-12 44.9 66.0 0.0016 17.7 9.0 6.6 1 1 8 9 9 9 9 Reovirus sigma C capsid protein GAS PF13851.1 gi|433591637|ref|YP_007281133.1| - 4.2e-11 42.4 14.5 0.0087 15.2 0.1 6.1 1 1 5 6 6 6 4 Growth-arrest specific micro-tubule binding MscS_porin PF12795.2 gi|433591637|ref|YP_007281133.1| - 6.5e-11 42.0 46.2 0.00016 21.0 5.3 6.0 1 1 4 6 6 6 4 Mechanosensitive ion channel porin domain Atg14 PF10186.4 gi|433591637|ref|YP_007281133.1| - 2.9e-09 36.2 6.3 0.12 11.2 0.2 5.8 1 1 4 5 5 5 3 UV radiation resistance protein and autophagy-related subunit 14 TBPIP PF07106.8 gi|433591637|ref|YP_007281133.1| - 3.5e-09 36.4 25.5 0.031 13.8 0.2 8.1 1 1 8 9 9 9 3 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) DUF3584 PF12128.3 gi|433591637|ref|YP_007281133.1| - 5.5e-09 33.9 58.0 2.2e-05 22.0 11.8 4.1 1 1 3 4 4 4 4 Protein of unknown function (DUF3584) CENP-F_leu_zip PF10473.4 gi|433591637|ref|YP_007281133.1| - 2.3e-08 34.0 53.9 0.014 15.2 1.3 8.2 2 1 6 8 8 8 3 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Spc7 PF08317.6 gi|433591637|ref|YP_007281133.1| - 2.4e-08 33.0 37.1 0.01 14.5 0.8 5.9 1 1 3 6 6 6 3 Spc7 kinetochore protein IncA PF04156.9 gi|433591637|ref|YP_007281133.1| - 3.7e-08 33.1 79.5 0.0013 18.3 1.6 8.5 2 1 6 8 8 7 5 IncA protein Apolipoprotein PF01442.13 gi|433591637|ref|YP_007281133.1| - 8e-08 32.0 61.4 0.0058 16.1 4.1 5.8 1 1 5 6 6 6 4 Apolipoprotein A1/A4/E domain Laminin_II PF06009.7 gi|433591637|ref|YP_007281133.1| - 1.5e-07 31.2 39.3 0.0055 16.4 1.3 8.4 1 1 6 9 9 9 3 Laminin Domain II Fib_alpha PF08702.5 gi|433591637|ref|YP_007281133.1| - 2.6e-07 30.8 6.6 3.1 7.9 0.0 7.0 1 1 4 7 7 7 0 Fibrinogen alpha/beta chain family COG2 PF06148.6 gi|433591637|ref|YP_007281133.1| - 2.6e-07 30.5 38.0 1.1 9.1 0.4 10.0 1 1 9 10 10 10 3 COG (conserved oligomeric Golgi) complex component, COG2 FlaC_arch PF05377.6 gi|433591637|ref|YP_007281133.1| - 3.8e-07 29.9 25.8 0.41 10.5 0.1 12.2 8 3 6 15 15 15 1 Flagella accessory protein C (FlaC) Filament PF00038.16 gi|433591637|ref|YP_007281133.1| - 3.8e-07 29.8 47.8 0.00052 19.5 10.2 5.3 1 1 3 4 4 4 3 Intermediate filament protein Spectrin PF00435.16 gi|433591637|ref|YP_007281133.1| - 4.2e-07 30.1 41.1 0.1 12.9 1.6 8.7 3 2 7 10 10 9 2 Spectrin repeat ATG16 PF08614.6 gi|433591637|ref|YP_007281133.1| - 4.3e-07 29.9 52.8 0.018 14.8 4.1 6.1 1 1 5 6 6 6 3 Autophagy protein 16 (ATG16) Prefoldin_2 PF01920.15 gi|433591637|ref|YP_007281133.1| - 5.1e-07 29.4 34.8 0.88 9.3 0.1 12.4 6 6 7 13 13 13 1 Prefoldin subunit Mnd1 PF03962.10 gi|433591637|ref|YP_007281133.1| - 1.1e-06 28.4 39.3 0.18 11.4 0.2 7.7 1 1 7 8 8 8 2 Mnd1 family Snapin_Pallidin PF14712.1 gi|433591637|ref|YP_007281133.1| - 1.2e-06 28.6 9.0 13 6.1 0.0 8.3 2 2 5 9 9 9 0 Snapin/Pallidin DUF342 PF03961.8 gi|433591637|ref|YP_007281133.1| - 2.6e-06 26.1 3.5 5.3 5.3 0.2 5.9 1 1 4 7 7 7 0 Protein of unknown function (DUF342) IFT57 PF10498.4 gi|433591637|ref|YP_007281133.1| - 7e-06 25.0 22.7 0.00015 20.6 0.7 4.6 1 1 4 5 5 5 2 Intra-flagellar transport protein 57 DUF16 PF01519.11 gi|433591637|ref|YP_007281133.1| - 7.9e-05 22.8 17.1 0.14 12.3 0.3 6.9 3 2 1 5 5 5 1 Protein of unknown function DUF16 DUF972 PF06156.8 gi|433591637|ref|YP_007281133.1| - 9.1e-05 22.7 23.2 4.7 7.6 0.2 8.6 1 1 7 9 9 8 0 Protein of unknown function (DUF972) Tropomyosin PF00261.15 gi|433591637|ref|YP_007281133.1| - 0.00011 21.4 87.0 0.076 12.0 3.3 5.5 1 1 2 4 4 4 3 Tropomyosin Tropomyosin_1 PF12718.2 gi|433591637|ref|YP_007281133.1| - 0.00017 21.4 79.3 0.01 15.6 4.6 7.9 1 1 6 8 8 8 3 Tropomyosin like Seryl_tRNA_N PF02403.17 gi|433591637|ref|YP_007281133.1| - 0.00023 21.1 41.8 0.19 11.7 0.3 10.1 2 2 7 9 9 9 2 Seryl-tRNA synthetase N-terminal domain Bacillus_HBL PF05791.6 gi|433591637|ref|YP_007281133.1| - 0.00027 20.3 19.7 0.0071 15.7 0.1 6.9 4 2 4 9 9 9 1 Bacillus haemolytic enterotoxin (HBL) Nup54 PF13874.1 gi|433591637|ref|YP_007281133.1| - 0.00033 20.3 12.2 0.55 9.9 0.4 6.5 3 3 5 8 8 8 1 Nucleoporin complex subunit 54 DUF4201 PF13870.1 gi|433591637|ref|YP_007281133.1| - 0.00034 20.1 7.2 5.4 6.4 0.1 5.8 2 2 3 6 6 6 0 Domain of unknown function (DUF4201) Matrilin_ccoil PF10393.4 gi|433591637|ref|YP_007281133.1| - 0.00055 19.2 8.0 7 6.1 0.0 6.8 7 1 1 8 8 6 0 Trimeric coiled-coil oligomerisation domain of matrilin BLOC1_2 PF10046.4 gi|433591637|ref|YP_007281133.1| - 0.00061 19.8 35.7 1.1 9.4 0.1 9.9 1 1 9 11 11 11 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 APG6 PF04111.7 gi|433591637|ref|YP_007281133.1| - 0.0012 17.9 44.5 0.17 10.8 0.9 6.3 1 1 8 9 9 9 4 Autophagy protein Apg6 PilJ PF13675.1 gi|433591637|ref|YP_007281133.1| - 0.0018 18.6 56.9 1.5 9.1 0.7 9.4 1 1 5 6 6 6 1 Type IV pili methyl-accepting chemotaxis transducer N-term ADIP PF11559.3 gi|433591637|ref|YP_007281133.1| - 0.0019 18.0 24.3 2.4 8.0 0.0 7.2 1 1 4 7 7 7 0 Afadin- and alpha -actinin-Binding DUF2730 PF10805.3 gi|433591637|ref|YP_007281133.1| - 0.002 17.8 33.9 0.77 9.5 0.1 9.6 2 1 10 12 12 12 1 Protein of unknown function (DUF2730) DUF948 PF06103.6 gi|433591637|ref|YP_007281133.1| - 0.011 15.5 28.8 0.24 11.2 0.0 9.1 2 2 8 10 10 9 0 Bacterial protein of unknown function (DUF948) Prominin PF05478.6 gi|433591637|ref|YP_007281133.1| - 0.012 13.1 17.7 0.012 13.2 0.6 3.9 1 1 3 4 4 4 0 Prominin STAT_alpha PF01017.15 gi|433591637|ref|YP_007281133.1| - 0.021 14.5 2.4 22 4.7 0.0 5.2 3 3 1 5 5 5 0 STAT protein, all-alpha domain Mod_r PF07200.8 gi|433591637|ref|YP_007281133.1| - 0.022 14.6 29.0 1.5 8.7 1.3 6.4 1 1 1 6 6 6 0 Modifier of rudimentary (Mod(r)) protein TMPIT PF07851.8 gi|433591637|ref|YP_007281133.1| - 0.029 13.4 1.7 2.4 7.1 0.0 3.9 4 1 2 6 6 5 0 TMPIT-like protein DUF1640 PF07798.6 gi|433591637|ref|YP_007281133.1| - 0.03 14.3 17.5 0.54 10.2 1.6 5.8 3 2 0 4 4 4 0 Protein of unknown function (DUF1640) Fzo_mitofusin PF04799.8 gi|433591637|ref|YP_007281133.1| - 0.031 13.6 14.8 3.4 7.0 0.1 6.6 4 3 4 8 8 8 0 fzo-like conserved region Fmp27_WPPW PF10359.4 gi|433591637|ref|YP_007281133.1| - 0.044 12.1 23.1 1.1 7.6 0.4 6.1 1 1 5 6 6 6 0 RNA pol II promoter Fmp27 protein domain Ax_dynein_light PF10211.4 gi|433591637|ref|YP_007281133.1| - 0.1 12.3 17.6 14 5.4 0.1 6.9 4 3 5 9 9 9 0 Axonemal dynein light chain FH2 PF02181.18 gi|433591637|ref|YP_007281133.1| - 0.11 11.3 22.0 1.7 7.4 0.2 6.3 1 1 3 5 5 5 0 Formin Homology 2 Domain TMF_TATA_bd PF12325.3 gi|433591637|ref|YP_007281133.1| - 0.12 12.1 58.4 0.016 14.9 1.5 8.6 1 1 7 9 9 9 0 TATA element modulatory factor 1 TATA binding DUF4140 PF13600.1 gi|433591637|ref|YP_007281133.1| - 0.12 12.8 81.5 0.64 10.4 1.1 13.0 1 1 10 11 11 10 0 N-terminal domain of unknown function (DUF4140) DUF4618 PF15397.1 gi|433591637|ref|YP_007281133.1| - 0.22 10.8 18.9 4.2 6.6 0.0 5.8 4 1 0 5 5 5 0 Domain of unknown function (DUF4618) TPR_MLP1_2 PF07926.7 gi|433591637|ref|YP_007281133.1| - 0.23 11.1 38.2 1.6 8.4 1.1 7.8 1 1 5 6 6 5 0 TPR/MLP1/MLP2-like protein TMF_DNA_bd PF12329.3 gi|433591637|ref|YP_007281133.1| - 0.4 10.5 49.4 1.2 9.0 1.9 10.8 2 2 12 15 15 14 0 TATA element modulatory factor 1 DNA binding Sec34 PF04136.10 gi|433591637|ref|YP_007281133.1| - 0.45 10.1 14.8 1.1 8.8 0.1 6.2 1 1 4 7 7 7 0 Sec34-like family SlyX PF04102.7 gi|433591637|ref|YP_007281133.1| - 0.53 10.7 45.8 3 8.2 0.1 10.8 2 2 8 12 12 12 0 SlyX ING PF12998.2 gi|433591637|ref|YP_007281133.1| - 0.57 10.4 12.7 6.4 7.1 0.1 5.2 4 1 1 5 5 4 0 Inhibitor of growth proteins N-terminal histone-binding Herpes_U30 PF04523.8 gi|433591637|ref|YP_007281133.1| - 1.1 6.6 11.3 3 5.1 0.5 4.2 2 2 3 5 5 5 0 Herpes virus tegument protein U30 DUF1395 PF07160.7 gi|433591637|ref|YP_007281133.1| - 1.4 8.3 11.5 17 4.8 0.1 5.8 3 2 1 6 6 5 0 Protein of unknown function (DUF1395) V_ATPase_I PF01496.14 gi|433591637|ref|YP_007281133.1| - 1.4 6.7 22.3 2.5 5.8 0.3 4.6 1 1 3 4 4 4 0 V-type ATPase 116kDa subunit family MbeD_MobD PF04899.7 gi|433591637|ref|YP_007281133.1| - 2.2 8.2 7.4 74 3.3 0.0 6.3 6 2 2 9 9 6 0 MbeD/MobD like Syntaxin PF00804.20 gi|433591637|ref|YP_007281133.1| - 2.3 8.4 35.9 57 3.9 0.9 7.5 1 1 4 5 5 4 0 Syntaxin AAA_27 PF13514.1 gi|433591637|ref|YP_007281133.1| - 3.6 5.1 96.1 0.27 8.8 14.9 3.0 2 1 1 3 3 2 0 AAA domain YojJ PF10372.4 gi|433591637|ref|YP_007281133.1| - 7.4 6.5 15.7 0.59 10.0 0.2 5.2 5 1 0 5 5 3 0 Bacterial membrane-spanning protein N-terminus WXG100 PF06013.7 gi|433591637|ref|YP_007281133.1| - 8.2 6.5 37.1 0.44 10.5 0.5 10.6 2 1 10 13 13 11 0 Proteins of 100 residues with WXG Zn-ribbon_8 PF09723.5 gi|433591638|ref|YP_007281134.1| - 0.00066 19.5 2.9 0.0019 18.1 2.0 1.6 1 1 0 1 1 1 1 Zinc ribbon domain zf-IS66 PF13005.2 gi|433591638|ref|YP_007281134.1| - 0.0059 16.5 1.7 0.043 13.7 0.1 2.1 2 0 0 2 2 2 1 zinc-finger binding domain of transposase IS66 DUF1272 PF06906.6 gi|433591638|ref|YP_007281134.1| - 0.0081 15.9 0.8 0.011 15.6 0.5 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1272) HypA PF01155.14 gi|433591638|ref|YP_007281134.1| - 0.0087 15.7 0.5 0.0095 15.6 0.3 1.0 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family Zn_Tnp_IS1595 PF12760.2 gi|433591638|ref|YP_007281134.1| - 0.0092 15.7 0.8 2.3 8.0 0.0 2.1 2 0 0 2 2 2 2 Transposase zinc-ribbon domain DUF2072 PF09845.4 gi|433591638|ref|YP_007281134.1| - 0.011 15.6 0.7 0.012 15.4 0.5 1.1 1 0 0 1 1 1 0 Zn-ribbon containing protein (DUF2072) zf-Di19 PF05605.7 gi|433591638|ref|YP_007281134.1| - 0.012 15.7 0.3 0.034 14.2 0.0 1.7 1 1 1 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding zf-ribbon_3 PF13248.1 gi|433591638|ref|YP_007281134.1| - 0.017 14.3 4.8 0.061 12.5 3.4 1.8 1 1 0 1 1 1 0 zinc-ribbon domain TFIIS_C PF01096.13 gi|433591638|ref|YP_007281134.1| - 0.027 14.1 1.0 1.5 8.4 0.1 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) DZR PF12773.2 gi|433591638|ref|YP_007281134.1| - 0.042 13.6 1.9 0.12 12.2 1.4 1.5 1 1 0 1 1 1 0 Double zinc ribbon zf-RING_3 PF14369.1 gi|433591638|ref|YP_007281134.1| - 0.056 13.4 2.5 0.15 12.0 1.7 1.7 1 1 1 2 2 2 0 zinc-finger A2L_zn_ribbon PF08792.5 gi|433591638|ref|YP_007281134.1| - 0.085 12.3 2.1 2.9 7.4 0.2 2.1 2 0 0 2 2 2 0 A2L zinc ribbon domain zf-H2C2_2 PF13465.1 gi|433591638|ref|YP_007281134.1| - 0.089 13.1 1.9 5.3 7.5 0.1 2.1 2 0 0 2 2 2 0 Zinc-finger double domain Prok-RING_1 PF14446.1 gi|433591638|ref|YP_007281134.1| - 0.092 12.4 0.9 0.11 12.2 0.6 1.2 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 TF_Zn_Ribbon PF08271.7 gi|433591638|ref|YP_007281134.1| - 0.1 11.9 4.4 0.94 8.8 3.1 2.0 1 1 0 1 1 1 0 TFIIB zinc-binding zf-C2HC5 PF06221.8 gi|433591638|ref|YP_007281134.1| - 0.13 12.0 0.4 0.2 11.4 0.3 1.4 1 1 0 1 1 1 0 Putative zinc finger motif, C2HC5-type zf-C2H2 PF00096.21 gi|433591638|ref|YP_007281134.1| - 0.15 12.4 3.5 5.5 7.5 0.3 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type Prim_Zn_Ribbon PF08273.7 gi|433591638|ref|YP_007281134.1| - 0.16 12.0 2.8 0.44 10.6 0.2 2.0 2 0 0 2 2 2 0 Zinc-binding domain of primase-helicase Cas_CXXC_CXXC PF09706.5 gi|433591638|ref|YP_007281134.1| - 0.2 11.8 0.4 0.2 11.8 0.2 2.0 1 1 1 2 2 2 0 CRISPR-associated protein (Cas_CXXC_CXXC) zinc_ribbon_2 PF13240.1 gi|433591638|ref|YP_007281134.1| - 0.45 10.0 5.1 2.8 7.5 3.5 2.0 1 1 0 1 1 1 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|433591638|ref|YP_007281134.1| - 0.54 9.9 3.3 9.9 5.9 0.2 2.0 1 1 1 2 2 2 0 Putative transposase DNA-binding domain Sgf11 PF08209.6 gi|433591638|ref|YP_007281134.1| - 0.56 9.5 3.6 5 6.5 0.4 2.1 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) DNA_RNApol_7kD PF03604.8 gi|433591638|ref|YP_007281134.1| - 0.59 9.6 2.9 0.9 9.0 2.0 1.3 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit DUF2387 PF09526.5 gi|433591638|ref|YP_007281134.1| - 0.65 9.9 4.2 0.45 10.4 0.4 1.9 1 1 1 2 2 2 0 Probable metal-binding protein (DUF2387) zf-CHCC PF10276.4 gi|433591638|ref|YP_007281134.1| - 0.66 9.8 3.2 0.76 9.6 0.1 2.0 2 0 0 2 2 2 0 Zinc-finger domain YhfH PF14149.1 gi|433591638|ref|YP_007281134.1| - 0.72 9.6 4.0 8.8 6.2 0.1 2.3 2 1 0 2 2 2 0 YhfH-like protein Zn-ribbon_8 PF09723.5 gi|433591639|ref|YP_007281135.1| - 0.0023 17.8 0.3 0.088 12.7 0.0 2.1 2 0 0 2 2 2 1 Zinc ribbon domain zf-Di19 PF05605.7 gi|433591639|ref|YP_007281135.1| - 0.0059 16.6 0.2 0.0077 16.3 0.1 1.3 1 0 0 1 1 1 1 Drought induced 19 protein (Di19), zinc-binding Zn_Tnp_IS1595 PF12760.2 gi|433591639|ref|YP_007281135.1| - 0.027 14.2 0.5 0.17 11.7 0.1 1.9 2 0 0 2 2 2 0 Transposase zinc-ribbon domain zf-RING_3 PF14369.1 gi|433591639|ref|YP_007281135.1| - 0.53 10.3 2.5 0.54 10.3 0.1 2.1 3 0 0 3 3 3 0 zinc-finger Zn_Tnp_IS1595 PF12760.2 gi|433591640|ref|YP_007281136.1| - 0.0067 16.2 2.0 0.97 9.2 0.2 2.2 2 0 0 2 2 2 2 Transposase zinc-ribbon domain DZR PF12773.2 gi|433591640|ref|YP_007281136.1| - 0.015 15.1 0.6 0.024 14.4 0.4 1.4 1 0 0 1 1 1 0 Double zinc ribbon Ogr_Delta PF04606.7 gi|433591640|ref|YP_007281136.1| - 0.015 14.9 2.8 0.23 11.1 0.1 2.4 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger DUF3624 PF12292.3 gi|433591640|ref|YP_007281136.1| - 0.021 15.2 1.0 0.032 14.6 0.7 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3624) zf-RING_4 PF14570.1 gi|433591640|ref|YP_007281136.1| - 0.028 13.9 2.0 0.045 13.3 1.4 1.3 1 0 0 1 1 1 0 RING/Ubox like zinc-binding domain HypA PF01155.14 gi|433591640|ref|YP_007281136.1| - 0.039 13.6 1.0 0.053 13.2 0.7 1.2 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Zn-ribbon_8 PF09723.5 gi|433591640|ref|YP_007281136.1| - 0.041 13.8 5.0 0.13 12.1 3.5 1.8 1 1 0 1 1 1 0 Zinc ribbon domain TF_Zn_Ribbon PF08271.7 gi|433591640|ref|YP_007281136.1| - 0.072 12.4 2.4 2.1 7.7 0.1 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding zf-ribbon_3 PF13248.1 gi|433591640|ref|YP_007281136.1| - 0.12 11.5 3.5 0.36 10.0 2.4 1.8 1 1 0 1 1 1 0 zinc-ribbon domain DUF3797 PF12677.2 gi|433591640|ref|YP_007281136.1| - 0.19 11.4 0.2 0.19 11.4 0.1 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) RNA_POL_M_15KD PF02150.11 gi|433591640|ref|YP_007281136.1| - 0.2 11.3 4.1 0.75 9.5 0.1 2.3 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit PhnA_Zn_Ribbon PF08274.7 gi|433591640|ref|YP_007281136.1| - 0.25 11.1 1.4 2.8 7.7 0.1 2.4 2 0 0 2 2 2 0 PhnA Zinc-Ribbon OrfB_Zn_ribbon PF07282.6 gi|433591640|ref|YP_007281136.1| - 0.28 10.8 2.5 0.45 10.2 1.7 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain TFIIS_C PF01096.13 gi|433591640|ref|YP_007281136.1| - 0.88 9.2 8.8 0.49 10.0 0.2 2.6 3 0 0 3 3 3 0 Transcription factor S-II (TFIIS) A2L_zn_ribbon PF08792.5 gi|433591640|ref|YP_007281136.1| - 0.88 9.1 4.2 2.7 7.5 2.9 1.8 1 1 0 1 1 1 0 A2L zinc ribbon domain DNA_RNApol_7kD PF03604.8 gi|433591640|ref|YP_007281136.1| - 7.4 6.1 11.1 2 7.9 1.4 2.9 2 1 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit RseC_MucC PF04246.7 gi|433591642|ref|YP_007281138.1| - 0.34 10.4 13.2 0.087 12.3 3.7 2.4 1 1 1 2 2 2 0 Positive regulator of sigma(E), RseC/MucC SHOCT PF09851.4 gi|433591644|ref|YP_007281140.1| - 4.8e-09 35.3 0.3 7.9e-09 34.6 0.2 1.4 1 0 0 1 1 1 1 Short C-terminal domain DUF1707 PF08044.6 gi|433591644|ref|YP_007281140.1| - 0.002 17.8 3.0 0.0035 17.0 2.1 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1707) GvpG PF05120.7 gi|433591644|ref|YP_007281140.1| - 0.0068 16.1 0.6 0.011 15.5 0.4 1.4 1 0 0 1 1 1 1 Gas vesicle protein G SpoIIIAH PF12685.2 gi|433591644|ref|YP_007281140.1| - 0.066 12.6 0.2 0.082 12.3 0.2 1.1 1 0 0 1 1 1 0 SpoIIIAH-like protein Hydrolase_6 PF13344.1 gi|433591645|ref|YP_007281141.1| - 5.4e-23 80.8 0.0 4.3e-22 77.8 0.0 2.4 3 0 0 3 3 3 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|433591645|ref|YP_007281141.1| - 3.4e-19 68.3 0.4 1.2e-18 66.5 0.3 1.9 2 0 0 2 2 2 1 HAD-hyrolase-like Hydrolase PF00702.21 gi|433591645|ref|YP_007281141.1| - 8.9e-08 32.7 0.1 2.9e-07 31.1 0.1 1.8 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|433591645|ref|YP_007281141.1| - 1.7e-07 31.6 0.1 0.0011 19.1 0.0 2.7 2 1 0 2 2 2 2 Haloacid dehalogenase-like hydrolase PGP_phosphatase PF09419.5 gi|433591645|ref|YP_007281141.1| - 0.013 14.8 0.1 0.025 13.9 0.1 1.5 1 0 0 1 1 1 0 Mitochondrial PGP phosphatase Rick_17kDa_Anti PF05433.10 gi|433591646|ref|YP_007281142.1| - 0.00014 21.4 20.9 0.00025 20.6 13.7 1.8 1 1 1 2 2 2 2 Glycine zipper 2TM domain Gly-zipper_YMGG PF13441.1 gi|433591646|ref|YP_007281142.1| - 0.00051 19.5 21.6 0.00093 18.6 14.7 1.5 1 1 0 1 1 1 1 YMGG-like Gly-zipper Gly-zipper_Omp PF13488.1 gi|433591646|ref|YP_007281142.1| - 0.00064 19.3 20.8 0.00089 18.8 14.1 1.5 1 1 0 1 1 1 1 Glycine zipper Gly-zipper_OmpA PF13436.1 gi|433591646|ref|YP_007281142.1| - 0.0015 18.1 12.2 0.0017 17.9 8.4 1.1 1 0 0 1 1 1 1 Glycine-zipper containing OmpA-like membrane domain TraT PF05818.7 gi|433591646|ref|YP_007281142.1| - 0.034 13.5 3.6 0.037 13.4 2.5 1.1 1 0 0 1 1 1 0 Enterobacterial TraT complement resistance protein Bacteriocin_IIc PF10439.4 gi|433591646|ref|YP_007281142.1| - 0.041 14.0 9.6 0.056 13.5 6.6 1.3 1 0 0 1 1 1 0 Bacteriocin class II with double-glycine leader peptide Transgly_assoc PF04226.8 gi|433591646|ref|YP_007281142.1| - 0.21 11.6 6.5 0.39 10.8 4.5 1.5 1 0 0 1 1 1 0 Transglycosylase associated protein DUF4514 PF14986.1 gi|433591646|ref|YP_007281142.1| - 3.9 7.3 5.5 0.42 10.4 0.3 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4514) Romo1 PF10247.4 gi|433591646|ref|YP_007281142.1| - 8.7 6.6 9.6 8.3 6.6 2.2 2.1 1 1 1 2 2 2 0 Reactive mitochondrial oxygen species modulator 1 DUF3482 PF11981.3 gi|433591646|ref|YP_007281142.1| - 9.8 5.3 10.3 11 5.1 7.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3482) 4HBT PF03061.17 gi|433591647|ref|YP_007281143.1| - 1.1e-15 57.4 0.1 1.6e-15 56.9 0.1 1.2 1 0 0 1 1 1 1 Thioesterase superfamily 4HBT_2 PF13279.1 gi|433591647|ref|YP_007281143.1| - 0.0047 17.3 0.1 0.0056 17.1 0.1 1.1 1 0 0 1 1 1 1 Thioesterase-like superfamily TraB PF01963.12 gi|433591648|ref|YP_007281144.1| - 4.7e-42 144.2 0.1 1.7e-23 83.4 0.0 2.2 2 0 0 2 2 2 2 TraB family Exo_endo_phos PF03372.18 gi|433591648|ref|YP_007281144.1| - 0.14 12.0 0.0 0.24 11.2 0.0 1.3 1 0 0 1 1 1 0 Endonuclease/Exonuclease/phosphatase family Peptidase_M50 PF02163.17 gi|433591649|ref|YP_007281145.1| - 4.1e-09 35.6 21.7 4.4e-08 32.3 14.4 2.6 1 1 0 1 1 1 1 Peptidase family M50 AIRS_C PF02769.17 gi|433591650|ref|YP_007281146.1| - 1.3e-19 70.7 0.0 2.1e-19 70.0 0.0 1.4 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|433591650|ref|YP_007281146.1| - 4e-13 49.4 3.2 7.4e-13 48.5 0.5 2.3 1 1 1 2 2 2 1 AIR synthase related protein, N-terminal domain Usp PF00582.21 gi|433591651|ref|YP_007281147.1| - 3.1e-30 105.2 0.6 3.4e-30 105.0 0.4 1.0 1 0 0 1 1 1 1 Universal stress protein family Macro PF01661.16 gi|433591652|ref|YP_007281148.1| - 1.6e-26 92.5 0.1 2e-26 92.1 0.0 1.2 1 0 0 1 1 1 1 Macro domain AP_endonuc_2 PF01261.19 gi|433591652|ref|YP_007281148.1| - 0.055 12.7 0.1 0.084 12.1 0.0 1.4 1 1 0 1 1 1 0 Xylose isomerase-like TIM barrel SH3_6 PF12913.2 gi|433591654|ref|YP_007281150.1| - 0.11 11.7 0.0 0.13 11.4 0.0 1.1 1 0 0 1 1 1 0 SH3 domain of the SH3b1 type Ferritin PF00210.19 gi|433591655|ref|YP_007281151.1| - 5e-27 94.3 3.8 6.3e-27 94.0 2.6 1.1 1 0 0 1 1 1 1 Ferritin-like domain DivIVA PF05103.8 gi|433591655|ref|YP_007281151.1| - 0.032 14.2 1.4 1.1 9.3 0.5 2.3 2 0 0 2 2 2 0 DivIVA protein Baculo_LEF5 PF04838.7 gi|433591655|ref|YP_007281151.1| - 0.14 11.8 0.0 1.1 9.0 0.0 2.0 2 0 0 2 2 2 0 Baculoviridae late expression factor 5 DUF1451 PF07295.6 gi|433591655|ref|YP_007281151.1| - 6.2 6.5 6.5 18 5.1 0.6 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF1451) Aldedh PF00171.17 gi|433591656|ref|YP_007281152.1| - 6.4e-141 469.8 0.5 7.4e-141 469.6 0.3 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.9 gi|433591656|ref|YP_007281152.1| - 0.0058 15.3 0.0 0.0091 14.7 0.0 1.2 1 0 0 1 1 1 1 Acyl-CoA reductase (LuxC) His_Phos_1 PF00300.17 gi|433591656|ref|YP_007281152.1| - 0.093 12.8 0.1 7.5 6.6 0.0 2.3 2 0 0 2 2 2 0 Histidine phosphatase superfamily (branch 1) PfkB PF00294.19 gi|433591658|ref|YP_007281154.1| - 5.3e-61 206.3 0.2 6e-61 206.1 0.2 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Virul_fac_BrkB PF03631.10 gi|433591659|ref|YP_007281155.1| - 2.1e-41 142.0 23.4 2.6e-41 141.7 16.2 1.1 1 0 0 1 1 1 1 Virulence factor BrkB IncA PF04156.9 gi|433591659|ref|YP_007281155.1| - 2.1e-06 27.4 0.1 2.1e-06 27.4 0.0 3.2 4 0 0 4 4 4 1 IncA protein ERM PF00769.14 gi|433591659|ref|YP_007281155.1| - 3.6e-06 26.7 7.7 4.9e-06 26.2 5.3 1.1 1 0 0 1 1 1 1 Ezrin/radixin/moesin family DUF904 PF06005.7 gi|433591659|ref|YP_007281155.1| - 6.9e-05 23.0 10.7 8.2e-05 22.8 0.6 2.3 1 1 1 2 2 2 1 Protein of unknown function (DUF904) CENP-F_leu_zip PF10473.4 gi|433591659|ref|YP_007281155.1| - 0.00028 20.7 6.3 0.00044 20.1 4.3 1.2 1 0 0 1 1 1 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 bZIP_1 PF00170.16 gi|433591659|ref|YP_007281155.1| - 0.0012 18.7 12.2 0.0012 18.7 8.4 2.0 1 1 1 2 2 2 1 bZIP transcription factor GAS PF13851.1 gi|433591659|ref|YP_007281155.1| - 0.015 14.5 4.5 0.021 14.0 3.1 1.1 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding DivIC PF04977.10 gi|433591659|ref|YP_007281155.1| - 0.022 14.2 9.7 0.026 14.0 1.7 2.6 1 1 1 2 2 2 0 Septum formation initiator Phlebovirus_NSM PF07246.6 gi|433591659|ref|YP_007281155.1| - 0.029 13.5 3.1 0.043 12.9 2.2 1.2 1 0 0 1 1 1 0 Phlebovirus nonstructural protein NS-M Atg14 PF10186.4 gi|433591659|ref|YP_007281155.1| - 0.066 12.1 8.9 0.094 11.6 6.2 1.1 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 V_ATPase_I PF01496.14 gi|433591659|ref|YP_007281155.1| - 0.07 10.9 1.2 0.14 10.0 0.8 1.4 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family ADIP PF11559.3 gi|433591659|ref|YP_007281155.1| - 0.071 13.0 8.3 0.11 12.3 5.7 1.2 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding Shugoshin_N PF07558.6 gi|433591659|ref|YP_007281155.1| - 0.073 12.7 7.9 0.61 9.8 0.7 2.3 2 0 0 2 2 2 0 Shugoshin N-terminal coiled-coil region APG6 PF04111.7 gi|433591659|ref|YP_007281155.1| - 0.098 11.6 4.9 0.14 11.1 3.4 1.1 1 0 0 1 1 1 0 Autophagy protein Apg6 DivIVA PF05103.8 gi|433591659|ref|YP_007281155.1| - 0.13 12.3 2.2 2.8 8.0 0.1 2.2 2 0 0 2 2 2 0 DivIVA protein M PF02370.11 gi|433591659|ref|YP_007281155.1| - 0.15 12.4 5.6 1.1 9.8 0.5 2.7 2 1 0 2 2 2 0 M protein repeat Prefoldin_2 PF01920.15 gi|433591659|ref|YP_007281155.1| - 0.36 10.5 5.5 0.38 10.5 0.6 2.3 1 1 1 2 2 2 0 Prefoldin subunit DUF972 PF06156.8 gi|433591659|ref|YP_007281155.1| - 0.4 11.0 3.9 0.27 11.5 0.3 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF972) DUF2205 PF10224.4 gi|433591659|ref|YP_007281155.1| - 0.63 9.6 6.7 2.2 7.8 4.7 1.9 1 1 0 1 1 1 0 Predicted coiled-coil protein (DUF2205) Kinetocho_Slk19 PF12709.2 gi|433591659|ref|YP_007281155.1| - 1 9.4 5.3 0.93 9.6 0.2 2.2 1 1 1 2 2 2 0 Central kinetochore-associated Fmp27_WPPW PF10359.4 gi|433591659|ref|YP_007281155.1| - 1.1 7.6 4.2 1.5 7.1 2.9 1.1 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain bZIP_2 PF07716.10 gi|433591659|ref|YP_007281155.1| - 1.4 8.7 17.7 0.67 9.8 4.2 3.0 1 1 1 2 2 2 0 Basic region leucine zipper Fungal_trans_2 PF11951.3 gi|433591659|ref|YP_007281155.1| - 1.5 7.3 3.6 2.1 6.8 2.5 1.1 1 0 0 1 1 1 0 Fungal specific transcription factor domain Mnd1 PF03962.10 gi|433591659|ref|YP_007281155.1| - 1.8 8.1 4.8 2.7 7.5 3.3 1.2 1 0 0 1 1 1 0 Mnd1 family TSC22 PF01166.13 gi|433591659|ref|YP_007281155.1| - 1.9 8.5 7.2 0.31 11.0 1.0 2.1 2 0 0 2 2 2 0 TSC-22/dip/bun family DUF3566 PF12089.3 gi|433591659|ref|YP_007281155.1| - 2.1 8.3 6.8 0.21 11.6 0.5 2.2 2 0 0 2 2 2 0 Transmembrane domain of unknown function (DUF3566) DUF4140 PF13600.1 gi|433591659|ref|YP_007281155.1| - 2.5 8.5 14.3 8.5 6.8 3.4 2.4 1 1 1 2 2 2 0 N-terminal domain of unknown function (DUF4140) TMF_DNA_bd PF12329.3 gi|433591659|ref|YP_007281155.1| - 3.1 7.6 6.5 4.9 7.0 4.5 1.3 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding HALZ PF02183.13 gi|433591659|ref|YP_007281155.1| - 3.3 7.5 8.3 0.61 9.8 0.5 2.4 2 0 0 2 2 2 0 Homeobox associated leucine zipper HlyIII PF03006.15 gi|433591659|ref|YP_007281155.1| - 4.4 6.6 8.7 8.9 5.6 6.0 1.4 1 0 0 1 1 1 0 Haemolysin-III related TroA PF01297.12 gi|433591661|ref|YP_007281157.1| - 1e-46 159.3 0.0 1.2e-46 159.0 0.0 1.1 1 0 0 1 1 1 1 Periplasmic solute binding protein family TAT_signal PF10518.4 gi|433591661|ref|YP_007281157.1| - 0.33 11.0 3.2 0.17 12.0 0.6 1.8 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence ABC_tran PF00005.22 gi|433591662|ref|YP_007281158.1| - 7.1e-30 104.0 0.0 9.7e-30 103.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|433591662|ref|YP_007281158.1| - 2e-12 47.6 0.1 2.9e-06 27.4 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|433591662|ref|YP_007281158.1| - 6.9e-05 22.9 0.1 0.00013 22.0 0.1 1.3 1 0 0 1 1 1 1 AAA ATPase domain Peripla_BP_4 PF13407.1 gi|433591662|ref|YP_007281158.1| - 0.00017 21.0 0.1 0.00024 20.5 0.1 1.2 1 0 0 1 1 1 1 Periplasmic binding protein domain SMC_N PF02463.14 gi|433591662|ref|YP_007281158.1| - 0.00017 20.8 0.2 0.00097 18.4 0.2 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain SbcCD_C PF13558.1 gi|433591662|ref|YP_007281158.1| - 0.0003 20.6 0.9 0.0091 15.8 0.2 2.8 1 1 1 2 2 2 1 Putative exonuclease SbcCD, C subunit AAA_33 PF13671.1 gi|433591662|ref|YP_007281158.1| - 0.001 18.9 0.2 0.0098 15.7 0.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|433591662|ref|YP_007281158.1| - 0.0033 16.9 0.1 0.0078 15.7 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|433591662|ref|YP_007281158.1| - 0.01 16.1 0.0 0.016 15.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|433591662|ref|YP_007281158.1| - 0.015 15.4 0.5 0.11 12.5 0.3 2.1 1 1 0 1 1 1 0 AAA domain cobW PF02492.14 gi|433591662|ref|YP_007281158.1| - 0.018 14.4 0.1 0.049 13.0 0.0 1.9 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain Mg_chelatase PF01078.16 gi|433591662|ref|YP_007281158.1| - 0.023 13.8 0.0 0.037 13.1 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_25 PF13481.1 gi|433591662|ref|YP_007281158.1| - 0.038 13.3 0.9 0.13 11.6 0.0 2.3 3 0 0 3 3 3 0 AAA domain NACHT PF05729.7 gi|433591662|ref|YP_007281158.1| - 0.065 12.8 0.0 0.1 12.2 0.0 1.3 1 0 0 1 1 1 0 NACHT domain AAA_17 PF13207.1 gi|433591662|ref|YP_007281158.1| - 0.079 13.7 0.1 0.41 11.4 0.0 2.0 2 0 0 2 2 2 0 AAA domain IstB_IS21 PF01695.12 gi|433591662|ref|YP_007281158.1| - 0.083 12.2 0.1 5.8 6.2 0.0 2.3 2 0 0 2 2 2 0 IstB-like ATP binding protein ABC_ATPase PF09818.4 gi|433591662|ref|YP_007281158.1| - 0.16 10.5 0.7 1.2 7.6 0.1 2.0 2 0 0 2 2 2 0 Predicted ATPase of the ABC class ABC-3 PF00950.12 gi|433591663|ref|YP_007281159.1| - 1.6e-59 201.3 35.2 1.6e-59 201.3 24.4 1.5 2 0 0 2 2 2 1 ABC 3 transport family FecCD PF01032.13 gi|433591663|ref|YP_007281159.1| - 7.7e-05 21.6 37.4 7.7e-05 21.6 25.9 1.8 2 1 0 2 2 2 1 FecCD transport family Ndc1_Nup PF09531.5 gi|433591663|ref|YP_007281159.1| - 0.088 11.2 9.7 0.13 10.6 6.7 1.3 1 0 0 1 1 1 0 Nucleoporin protein Ndc1-Nup Ldr_toxin PF13940.1 gi|433591663|ref|YP_007281159.1| - 0.61 9.9 6.3 8.4 6.2 0.2 4.1 3 0 0 3 3 3 0 Toxin Ldr, type I toxin-antitoxin system Tmemb_18A PF09771.4 gi|433591663|ref|YP_007281159.1| - 7.1 6.6 8.7 3.6 7.5 3.3 2.3 2 0 0 2 2 2 0 Transmembrane protein 188 DUF2407_C PF13373.1 gi|433591663|ref|YP_007281159.1| - 7.6 6.4 5.6 1.9 8.3 0.7 2.2 2 0 0 2 2 2 0 DUF2407 C-terminal domain DUF4271 PF14093.1 gi|433591664|ref|YP_007281160.1| - 0.0053 16.4 0.0 0.0065 16.1 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4271) ABC2_membrane_3 PF12698.2 gi|433591664|ref|YP_007281160.1| - 0.067 12.2 2.8 0.11 11.4 1.6 1.4 1 1 0 1 1 1 0 ABC-2 family transporter protein DUF2069 PF09842.4 gi|433591664|ref|YP_007281160.1| - 0.14 12.1 0.7 1.5 8.8 0.0 2.3 2 1 0 2 2 2 0 Predicted membrane protein (DUF2069) DUF3087 PF11286.3 gi|433591664|ref|YP_007281160.1| - 0.17 11.1 1.0 0.27 10.4 0.1 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3087) DUF2079 PF09852.4 gi|433591664|ref|YP_007281160.1| - 0.33 9.6 2.7 0.38 9.4 1.9 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2079) DUF1218 PF06749.7 gi|433591664|ref|YP_007281160.1| - 0.39 11.1 3.5 3.9 8.0 0.6 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1218) DUF2975 PF11188.3 gi|433591664|ref|YP_007281160.1| - 2.3 7.9 11.5 0.2 11.3 0.9 2.1 1 1 0 2 2 2 0 Protein of unknown function (DUF2975) DUF979 PF06166.7 gi|433591665|ref|YP_007281161.1| - 0.025 13.5 0.7 0.045 12.7 0.5 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF979) CoA_transf_3 PF02515.12 gi|433591665|ref|YP_007281161.1| - 0.17 11.0 1.7 0.26 10.4 1.1 1.4 1 0 0 1 1 1 0 CoA-transferase family III ATP-grasp_5 PF13549.1 gi|433591666|ref|YP_007281162.1| - 1.2e-72 243.6 0.2 1.9e-72 243.0 0.2 1.3 1 0 0 1 1 1 1 ATP-grasp domain Succ_CoA_lig PF13607.1 gi|433591666|ref|YP_007281162.1| - 6.4e-52 174.8 1.8 3.6e-51 172.3 0.2 2.6 3 0 0 3 3 3 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.1 gi|433591666|ref|YP_007281162.1| - 3.5e-23 81.9 2.7 1.3e-22 80.1 0.2 2.9 4 0 0 4 4 4 1 CoA binding domain CoA_binding PF02629.14 gi|433591666|ref|YP_007281162.1| - 8.7e-11 42.1 0.3 3e-10 40.4 0.2 2.0 1 0 0 1 1 1 1 CoA binding domain ATP-grasp_2 PF08442.5 gi|433591666|ref|YP_007281162.1| - 0.00013 21.3 0.0 0.00032 20.1 0.0 1.7 1 1 0 1 1 1 1 ATP-grasp domain ATP-grasp_4 PF13535.1 gi|433591666|ref|YP_007281162.1| - 0.0037 17.0 0.0 0.0077 15.9 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp domain RimK PF08443.6 gi|433591666|ref|YP_007281162.1| - 0.12 11.8 0.0 0.68 9.3 0.0 2.1 2 0 0 2 2 2 0 RimK-like ATP-grasp domain DRTGG PF07085.7 gi|433591667|ref|YP_007281163.1| - 1.4e-28 98.5 0.1 4.1e-28 97.0 0.0 1.8 2 0 0 2 2 2 1 DRTGG domain AAA_26 PF13500.1 gi|433591667|ref|YP_007281163.1| - 8.2e-28 97.3 0.0 1.5e-27 96.4 0.0 1.5 1 0 0 1 1 1 1 AAA domain CbiA PF01656.18 gi|433591667|ref|YP_007281163.1| - 0.0035 16.7 0.4 0.012 14.9 0.3 1.9 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain GYD PF08734.6 gi|433591667|ref|YP_007281163.1| - 0.098 12.3 0.2 4 7.2 0.0 2.6 2 0 0 2 2 2 0 GYD domain ECH PF00378.15 gi|433591668|ref|YP_007281164.1| - 2.7e-43 147.8 0.0 3.3e-43 147.5 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family ECH_C PF13766.1 gi|433591668|ref|YP_007281164.1| - 0.0015 18.6 0.1 0.0029 17.7 0.1 1.4 1 0 0 1 1 1 1 2-enoyl-CoA Hydratase C-terminal region PRC PF05239.11 gi|433591669|ref|YP_007281165.1| - 1.1e-11 44.4 0.6 1.4e-11 44.0 0.4 1.1 1 0 0 1 1 1 1 PRC-barrel domain TrkA_N PF02254.13 gi|433591670|ref|YP_007281166.1| - 7e-20 71.1 0.8 2.7e-19 69.2 0.6 2.1 1 0 0 1 1 1 1 TrkA-N domain DHH PF01368.15 gi|433591670|ref|YP_007281166.1| - 4.7e-17 61.9 0.4 4.8e-16 58.6 0.1 2.3 3 0 0 3 3 3 1 DHH family NAD_binding_10 PF13460.1 gi|433591670|ref|YP_007281166.1| - 6.9e-09 35.9 3.6 1.3e-08 35.0 1.5 2.2 2 1 1 3 3 3 1 NADH(P)-binding F420_oxidored PF03807.12 gi|433591670|ref|YP_007281166.1| - 1.4e-08 35.0 0.3 6.8e-08 32.8 0.1 2.3 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent ApbA PF02558.11 gi|433591670|ref|YP_007281166.1| - 2.7e-07 30.1 0.0 8.2e-07 28.5 0.0 1.9 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA Saccharop_dh PF03435.13 gi|433591670|ref|YP_007281166.1| - 5.1e-07 29.0 0.2 1.1e-06 27.9 0.1 1.5 1 0 0 1 1 1 1 Saccharopine dehydrogenase NAD_binding_7 PF13241.1 gi|433591670|ref|YP_007281166.1| - 1.9e-05 24.8 1.2 5e-05 23.5 0.6 1.9 1 1 0 1 1 1 1 Putative NAD(P)-binding NAD_Gly3P_dh_N PF01210.18 gi|433591670|ref|YP_007281166.1| - 3.1e-05 23.7 0.0 7.7e-05 22.4 0.0 1.7 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_2 PF03446.10 gi|433591670|ref|YP_007281166.1| - 4.6e-05 23.3 0.0 0.00012 22.0 0.0 1.7 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase Shikimate_DH PF01488.15 gi|433591670|ref|YP_007281166.1| - 0.00016 21.7 0.2 0.00052 20.1 0.0 2.0 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase UDPG_MGDP_dh_N PF03721.9 gi|433591670|ref|YP_007281166.1| - 0.00021 20.7 0.0 0.00073 18.9 0.0 1.9 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain IlvN PF07991.7 gi|433591670|ref|YP_007281166.1| - 0.00032 20.1 0.1 0.00061 19.1 0.1 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain 3HCDH_N PF02737.13 gi|433591670|ref|YP_007281166.1| - 0.0014 18.2 0.0 0.0037 16.9 0.0 1.8 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ThiF PF00899.16 gi|433591670|ref|YP_007281166.1| - 0.0017 18.1 0.4 0.006 16.4 0.2 2.0 1 1 0 1 1 1 1 ThiF family FAD_binding_3 PF01494.14 gi|433591670|ref|YP_007281166.1| - 0.0018 17.3 0.0 0.003 16.6 0.0 1.3 1 0 0 1 1 1 1 FAD binding domain XdhC_C PF13478.1 gi|433591670|ref|YP_007281166.1| - 0.0022 18.2 0.4 0.02 15.2 0.1 2.4 1 1 1 2 2 2 1 XdhC Rossmann domain 2-Hacid_dh_C PF02826.14 gi|433591670|ref|YP_007281166.1| - 0.0062 15.7 0.0 0.016 14.3 0.0 1.6 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DHHA1 PF02272.14 gi|433591670|ref|YP_007281166.1| - 0.007 16.0 0.6 0.039 13.6 0.0 2.4 1 1 1 2 2 2 1 DHHA1 domain DUF364 PF04016.7 gi|433591670|ref|YP_007281166.1| - 0.0072 15.6 0.1 0.026 13.8 0.0 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF364) DAO PF01266.19 gi|433591670|ref|YP_007281166.1| - 0.0094 14.8 0.3 0.039 12.8 0.0 2.1 3 0 0 3 3 3 1 FAD dependent oxidoreductase ADH_zinc_N PF00107.21 gi|433591670|ref|YP_007281166.1| - 0.013 15.0 0.8 0.083 12.4 0.1 2.7 4 0 0 4 4 3 0 Zinc-binding dehydrogenase Pyr_redox_2 PF07992.9 gi|433591670|ref|YP_007281166.1| - 0.037 13.9 0.0 0.066 13.0 0.0 1.5 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|433591670|ref|YP_007281166.1| - 0.064 13.6 0.0 0.19 12.1 0.0 1.9 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Epimerase PF01370.16 gi|433591670|ref|YP_007281166.1| - 0.085 12.2 0.2 0.2 11.0 0.0 1.6 1 1 1 2 2 2 0 NAD dependent epimerase/dehydratase family NAD_binding_8 PF13450.1 gi|433591670|ref|YP_007281166.1| - 0.1 12.6 0.0 0.26 11.3 0.0 1.7 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain adh_short PF00106.20 gi|433591670|ref|YP_007281166.1| - 0.19 11.5 8.1 0.37 10.6 1.4 3.2 2 1 0 3 3 3 0 short chain dehydrogenase DUF411 PF04214.8 gi|433591671|ref|YP_007281167.1| - 2.9e-29 100.3 0.0 4.3e-28 96.6 0.0 2.0 2 0 0 2 2 2 1 Protein of unknown function, DUF TAT_signal PF10518.4 gi|433591671|ref|YP_007281167.1| - 0.031 14.2 0.7 0.031 14.2 0.5 2.5 3 0 0 3 3 3 0 TAT (twin-arginine translocation) pathway signal sequence Lactamase_B_3 PF13483.1 gi|433591672|ref|YP_007281168.1| - 1.9e-28 99.1 0.7 2.5e-28 98.8 0.5 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.2 gi|433591672|ref|YP_007281168.1| - 5e-06 26.2 1.0 9e-06 25.3 0.7 1.4 1 1 0 1 1 1 1 Beta-lactamase superfamily domain SPRY PF00622.23 gi|433591672|ref|YP_007281168.1| - 0.11 12.5 0.0 0.18 11.8 0.0 1.3 1 0 0 1 1 1 0 SPRY domain DDE_3 PF13358.1 gi|433591674|ref|YP_007281170.1| - 1.5e-27 96.1 0.0 3.1e-27 95.1 0.0 1.6 2 0 0 2 2 2 1 DDE superfamily endonuclease HTH_33 PF13592.1 gi|433591674|ref|YP_007281170.1| - 3e-23 81.1 0.6 1.1e-22 79.3 0.0 2.2 2 0 0 2 2 2 1 Winged helix-turn helix HTH_29 PF13551.1 gi|433591674|ref|YP_007281170.1| - 3.9e-21 75.3 0.1 7.8e-21 74.3 0.1 1.5 1 0 0 1 1 1 1 Winged helix-turn helix HTH_28 PF13518.1 gi|433591674|ref|YP_007281170.1| - 2e-10 40.4 1.0 2e-09 37.2 0.2 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_32 PF13565.1 gi|433591674|ref|YP_007281170.1| - 3.2e-10 40.6 3.2 5.2e-10 39.9 0.2 2.7 2 1 1 3 3 3 1 Homeodomain-like domain HTH_23 PF13384.1 gi|433591674|ref|YP_007281170.1| - 2.4e-05 23.8 0.0 5.7e-05 22.6 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain DDE_Tnp_ISAZ013 PF07592.6 gi|433591674|ref|YP_007281170.1| - 9e-05 21.3 0.0 0.0029 16.4 0.0 2.1 2 0 0 2 2 2 1 Rhodopirellula transposase DDE domain rve PF00665.21 gi|433591674|ref|YP_007281170.1| - 0.0027 17.7 0.0 0.0065 16.5 0.0 1.7 2 0 0 2 2 2 1 Integrase core domain HTH_Tnp_IS630 PF01710.11 gi|433591674|ref|YP_007281170.1| - 0.012 15.2 0.0 0.025 14.2 0.0 1.5 1 0 0 1 1 1 0 Transposase Sigma70_ECF PF07638.6 gi|433591674|ref|YP_007281170.1| - 0.021 14.4 0.1 0.055 13.1 0.0 1.7 2 0 0 2 2 2 0 ECF sigma factor DUF387 PF04079.11 gi|433591674|ref|YP_007281170.1| - 0.033 13.5 0.0 0.078 12.3 0.0 1.6 1 0 0 1 1 1 0 Putative transcriptional regulators (Ypuh-like) HTH_17 PF12728.2 gi|433591674|ref|YP_007281170.1| - 0.079 13.2 0.1 0.19 12.0 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_36 PF13730.1 gi|433591674|ref|YP_007281170.1| - 0.089 12.9 0.1 0.37 10.9 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain CBP4 PF07960.6 gi|433591674|ref|YP_007281170.1| - 0.18 11.4 1.8 1.6 8.3 1.0 2.1 2 0 0 2 2 2 0 CBP4 HTH_3 PF01381.17 gi|433591674|ref|YP_007281170.1| - 0.35 10.7 1.3 3.2 7.6 0.0 2.8 3 0 0 3 3 3 0 Helix-turn-helix Cytochrom_D1 PF02239.11 gi|433591675|ref|YP_007281171.1| - 1.8e-77 260.1 0.0 3.1e-77 259.3 0.0 1.4 1 0 0 1 1 1 1 Cytochrome D1 heme domain Cupredoxin_1 PF13473.1 gi|433591675|ref|YP_007281171.1| - 2.4e-06 27.3 0.6 5.1e-06 26.3 0.2 1.8 1 1 0 1 1 1 1 Cupredoxin-like domain COX2 PF00116.15 gi|433591675|ref|YP_007281171.1| - 4.6e-06 26.4 0.2 1.3e-05 25.0 0.0 1.9 2 0 0 2 2 2 1 Cytochrome C oxidase subunit II, periplasmic domain TAT_signal PF10518.4 gi|433591675|ref|YP_007281171.1| - 0.00014 21.5 2.3 0.00034 20.3 1.6 1.6 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Viral_P18 PF04521.8 gi|433591675|ref|YP_007281171.1| - 0.18 11.2 0.0 0.32 10.4 0.0 1.3 1 0 0 1 1 1 0 ssRNA positive strand viral 18kD cysteine rich protein Lactonase PF10282.4 gi|433591676|ref|YP_007281172.1| - 6.3e-09 35.3 0.0 0.0016 17.5 0.0 3.4 2 2 1 3 3 3 2 Lactonase, 7-bladed beta-propeller Cytochrom_D1 PF02239.11 gi|433591676|ref|YP_007281172.1| - 3.3e-08 32.2 0.5 0.0022 16.3 0.0 3.0 2 2 1 3 3 3 2 Cytochrome D1 heme domain NHL PF01436.16 gi|433591676|ref|YP_007281172.1| - 0.76 9.8 4.1 0.9 9.6 0.2 3.1 3 0 0 3 3 3 0 NHL repeat Cytochrom_D1 PF02239.11 gi|433591677|ref|YP_007281173.1| - 3.9e-05 22.1 0.0 0.00033 19.0 0.0 2.4 2 1 0 2 2 2 1 Cytochrome D1 heme domain Lactonase PF10282.4 gi|433591677|ref|YP_007281173.1| - 0.00069 18.7 0.0 0.018 14.1 0.0 2.4 1 1 0 2 2 2 1 Lactonase, 7-bladed beta-propeller Radical_SAM PF04055.16 gi|433591678|ref|YP_007281174.1| - 2.3e-21 76.7 0.0 4.2e-21 75.8 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|433591678|ref|YP_007281174.1| - 5.8e-11 42.6 0.0 9.8e-11 41.9 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|433591678|ref|YP_007281174.1| - 4.7e-09 36.2 0.0 8.3e-09 35.5 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain AP_endonuc_2 PF01261.19 gi|433591678|ref|YP_007281174.1| - 3.1e-05 23.3 0.3 0.012 14.9 0.2 2.3 2 0 0 2 2 2 2 Xylose isomerase-like TIM barrel DUF1906 PF08924.6 gi|433591678|ref|YP_007281174.1| - 0.02 14.7 0.1 0.039 13.8 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1906) OmpA PF00691.15 gi|433591678|ref|YP_007281174.1| - 0.079 13.3 0.0 33 4.9 0.0 3.0 3 1 0 3 3 3 0 OmpA family GlutR_N PF05201.10 gi|433591679|ref|YP_007281175.1| - 9.9e-27 93.4 0.0 2.5e-26 92.0 0.0 1.7 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, N-terminal domain GlutR_dimer PF00745.15 gi|433591679|ref|YP_007281175.1| - 1.5e-21 76.1 0.9 3e-21 75.2 0.6 1.5 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, dimerisation domain Shikimate_DH PF01488.15 gi|433591679|ref|YP_007281175.1| - 8.9e-12 45.2 0.0 1.8e-11 44.2 0.0 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase DUF1525 PF07511.6 gi|433591679|ref|YP_007281175.1| - 0.0087 16.0 0.3 4 7.4 0.0 2.9 2 1 0 2 2 2 2 Protein of unknown function (DUF1525) Pyr_redox PF00070.22 gi|433591679|ref|YP_007281175.1| - 0.0092 16.3 0.0 0.023 15.1 0.0 1.7 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase ARGLU PF15346.1 gi|433591679|ref|YP_007281175.1| - 0.16 11.7 3.0 0.28 10.9 2.1 1.3 1 0 0 1 1 1 0 Arginine and glutamate-rich 1 Fer4_11 PF13247.1 gi|433591680|ref|YP_007281176.1| - 1.7e-32 111.2 5.5 1.7e-32 111.2 3.8 1.7 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|433591680|ref|YP_007281176.1| - 1.9e-11 44.1 9.9 5.7e-07 29.8 4.5 3.1 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|433591680|ref|YP_007281176.1| - 9.4e-08 31.7 21.3 2.6e-05 23.9 5.3 3.0 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|433591680|ref|YP_007281176.1| - 2.3e-06 27.1 19.8 0.00093 18.9 1.5 4.1 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_9 PF13187.1 gi|433591680|ref|YP_007281176.1| - 2e-05 24.7 17.6 0.035 14.3 6.8 3.6 2 1 2 4 4 4 4 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|433591680|ref|YP_007281176.1| - 3.4e-05 23.6 14.1 0.016 15.0 1.4 2.6 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|433591680|ref|YP_007281176.1| - 0.00053 19.9 13.6 0.0086 16.0 4.3 3.0 2 1 2 4 4 4 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|433591680|ref|YP_007281176.1| - 0.001 19.7 14.6 0.6 10.8 0.7 4.1 3 1 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_17 PF13534.1 gi|433591680|ref|YP_007281176.1| - 0.0013 19.0 19.7 0.015 15.6 0.5 3.6 2 1 1 3 3 3 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|433591680|ref|YP_007281176.1| - 0.0017 18.1 23.6 0.025 14.4 1.6 3.7 4 0 0 4 4 3 3 4Fe-4S binding domain Fer4_4 PF12800.2 gi|433591680|ref|YP_007281176.1| - 0.026 14.8 26.2 0.36 11.2 1.6 4.2 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_15 PF13459.1 gi|433591680|ref|YP_007281176.1| - 0.094 13.2 9.4 0.47 11.0 0.0 3.7 3 0 0 3 3 3 0 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|433591680|ref|YP_007281176.1| - 0.13 12.8 29.4 0.16 12.5 4.2 4.3 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4 PF00037.22 gi|433591680|ref|YP_007281176.1| - 0.78 9.4 24.9 0.049 13.2 1.5 4.2 4 1 0 4 4 4 0 4Fe-4S binding domain Fer4_13 PF13370.1 gi|433591680|ref|YP_007281176.1| - 3.9 7.9 10.5 1.9 8.9 0.3 3.4 2 1 0 2 2 2 0 4Fe-4S single cluster domain Nitrate_red_del PF02613.10 gi|433591681|ref|YP_007281177.1| - 2.6e-15 56.4 2.2 3.7e-15 55.9 1.6 1.2 1 0 0 1 1 1 1 Nitrate reductase delta subunit EB_dh PF09459.5 gi|433591682|ref|YP_007281178.1| - 4.2e-25 88.6 11.2 5.4e-24 85.0 7.8 2.1 1 1 0 1 1 1 1 Ethylbenzene dehydrogenase NOA36 PF06524.7 gi|433591682|ref|YP_007281178.1| - 1.3 8.1 5.6 2.3 7.4 3.9 1.3 1 0 0 1 1 1 0 NOA36 protein HEAT_2 PF13646.1 gi|433591683|ref|YP_007281179.1| - 4.2e-24 84.6 19.2 4.9e-14 52.3 2.1 3.7 1 1 3 4 4 4 3 HEAT repeats HEAT PF02985.17 gi|433591683|ref|YP_007281179.1| - 2.2e-14 52.1 8.9 0.16 12.1 0.0 6.4 6 0 0 6 6 6 4 HEAT repeat HEAT_EZ PF13513.1 gi|433591683|ref|YP_007281179.1| - 2e-09 37.6 16.8 0.052 14.0 0.0 6.3 4 2 3 7 7 7 4 HEAT-like repeat Adaptin_N PF01602.15 gi|433591683|ref|YP_007281179.1| - 0.011 14.1 0.0 6.2 5.0 0.0 2.8 2 1 1 3 3 3 0 Adaptin N terminal region Cnd1 PF12717.2 gi|433591683|ref|YP_007281179.1| - 0.028 14.2 0.0 27 4.5 0.0 3.4 3 1 0 3 3 3 0 non-SMC mitotic condensation complex subunit 1 HEAT_PBS PF03130.11 gi|433591683|ref|YP_007281179.1| - 0.029 14.8 26.8 0.38 11.3 0.1 6.0 7 0 0 7 7 7 0 PBS lyase HEAT-like repeat DUF3156 PF11354.3 gi|433591683|ref|YP_007281179.1| - 0.1 11.9 0.0 0.32 10.3 0.0 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF3156) Ins_allergen_rp PF06757.8 gi|433591684|ref|YP_007281180.1| - 0.037 13.5 0.4 0.093 12.2 0.0 1.7 2 0 0 2 2 2 0 Insect allergen related repeat, nitrile-specifier detoxification ParA PF10609.4 gi|433591685|ref|YP_007281181.1| - 5.6e-24 83.8 0.0 9.2e-24 83.1 0.0 1.3 1 0 0 1 1 1 1 ParA/MinD ATPase like DUF2249 PF10006.4 gi|433591685|ref|YP_007281181.1| - 1.1e-15 56.8 1.0 2.8e-15 55.6 0.3 2.1 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2249) CbiA PF01656.18 gi|433591685|ref|YP_007281181.1| - 2.1e-15 56.6 0.0 3.2e-15 56.0 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain DUF59 PF01883.14 gi|433591685|ref|YP_007281181.1| - 8e-11 41.7 1.3 2.1e-10 40.4 0.6 2.0 2 0 0 2 2 2 1 Domain of unknown function DUF59 AAA_31 PF13614.1 gi|433591685|ref|YP_007281181.1| - 1.3e-08 34.8 0.0 9.2e-08 32.1 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_26 PF13500.1 gi|433591685|ref|YP_007281181.1| - 0.00061 19.4 0.0 0.41 10.2 0.0 2.2 2 0 0 2 2 2 2 AAA domain VirC1 PF07015.6 gi|433591685|ref|YP_007281181.1| - 0.0011 18.1 0.0 0.0019 17.3 0.0 1.3 1 0 0 1 1 1 1 VirC1 protein ArsA_ATPase PF02374.10 gi|433591685|ref|YP_007281181.1| - 0.0025 16.9 0.0 0.012 14.7 0.1 2.0 3 0 0 3 3 3 1 Anion-transporting ATPase MipZ PF09140.6 gi|433591685|ref|YP_007281181.1| - 0.017 14.2 0.0 0.023 13.7 0.0 1.3 1 0 0 1 1 1 0 ATPase MipZ AAA_17 PF13207.1 gi|433591685|ref|YP_007281181.1| - 0.043 14.6 0.1 0.19 12.5 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.1 gi|433591685|ref|YP_007281181.1| - 0.046 14.0 0.0 0.089 13.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain MobB PF03205.9 gi|433591686|ref|YP_007281182.1| - 1.2e-19 70.3 0.0 7.1e-18 64.6 0.0 2.1 1 1 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_16 PF13191.1 gi|433591686|ref|YP_007281182.1| - 0.00023 21.2 0.1 0.00053 20.0 0.1 1.7 1 1 0 1 1 1 1 AAA ATPase domain DUF258 PF03193.11 gi|433591686|ref|YP_007281182.1| - 0.0021 17.2 0.0 0.013 14.6 0.0 1.9 1 1 0 1 1 1 1 Protein of unknown function, DUF258 MMR_HSR1 PF01926.18 gi|433591686|ref|YP_007281182.1| - 0.003 17.5 0.0 0.005 16.7 0.0 1.4 1 0 0 1 1 1 1 50S ribosome-binding GTPase SRPRB PF09439.5 gi|433591686|ref|YP_007281182.1| - 0.011 15.0 0.0 0.015 14.5 0.0 1.2 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit PduV-EutP PF10662.4 gi|433591686|ref|YP_007281182.1| - 0.011 15.1 0.0 0.016 14.7 0.0 1.2 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation GTP_EFTU PF00009.22 gi|433591686|ref|YP_007281182.1| - 0.012 15.0 0.0 0.019 14.3 0.0 1.3 1 1 0 1 1 1 0 Elongation factor Tu GTP binding domain AAA_33 PF13671.1 gi|433591686|ref|YP_007281182.1| - 0.033 14.0 0.0 0.062 13.1 0.0 1.4 1 1 0 1 1 1 0 AAA domain UPF0079 PF02367.12 gi|433591686|ref|YP_007281182.1| - 0.042 13.4 0.0 0.063 12.9 0.0 1.2 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 Zeta_toxin PF06414.7 gi|433591686|ref|YP_007281182.1| - 0.045 12.8 0.0 0.12 11.4 0.0 1.6 2 0 0 2 2 2 0 Zeta toxin PRK PF00485.13 gi|433591686|ref|YP_007281182.1| - 0.093 12.2 0.0 0.14 11.6 0.0 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA_17 PF13207.1 gi|433591686|ref|YP_007281182.1| - 0.093 13.5 0.0 0.24 12.2 0.0 1.8 1 1 0 1 1 1 0 AAA domain Miro PF08477.8 gi|433591686|ref|YP_007281182.1| - 0.17 12.4 0.0 0.26 11.7 0.0 1.3 1 0 0 1 1 1 0 Miro-like protein SBP_bac_11 PF13531.1 gi|433591687|ref|YP_007281183.1| - 1.7e-22 80.1 1.6 2e-22 79.9 1.1 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|433591687|ref|YP_007281183.1| - 0.00028 20.7 0.7 0.0024 17.6 0.0 2.3 2 1 1 3 3 3 1 Bacterial extracellular solute-binding protein BPD_transp_1 PF00528.17 gi|433591688|ref|YP_007281184.1| - 2e-15 56.7 18.6 2e-15 56.7 12.9 1.8 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component HTH_10 PF04967.7 gi|433591689|ref|YP_007281185.1| - 9.3e-19 66.7 0.1 1.5e-18 66.0 0.1 1.4 1 0 0 1 1 1 1 HTH DNA binding domain HTH_24 PF13412.1 gi|433591689|ref|YP_007281185.1| - 0.00011 21.5 0.1 0.00023 20.4 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|433591689|ref|YP_007281185.1| - 0.00031 20.3 0.2 0.00087 18.9 0.0 1.8 2 0 0 2 2 2 1 MarR family HTH_AsnC-type PF13404.1 gi|433591689|ref|YP_007281185.1| - 0.0024 17.3 0.1 0.006 16.0 0.1 1.6 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain FbpA PF05833.6 gi|433591689|ref|YP_007281185.1| - 0.0099 14.4 0.0 0.013 14.0 0.0 1.1 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) UPF0122 PF04297.9 gi|433591689|ref|YP_007281185.1| - 0.025 14.6 0.0 0.044 13.8 0.0 1.3 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like Sigma70_r4 PF04545.11 gi|433591689|ref|YP_007281185.1| - 0.027 13.7 0.2 0.064 12.5 0.1 1.7 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_28 PF13518.1 gi|433591689|ref|YP_007281185.1| - 0.068 13.1 0.0 0.19 11.7 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain GntR PF00392.16 gi|433591689|ref|YP_007281185.1| - 0.096 12.1 0.3 0.19 11.1 0.2 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_3 PF01381.17 gi|433591689|ref|YP_007281185.1| - 0.12 12.2 0.0 0.35 10.7 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix HTH_11 PF08279.7 gi|433591689|ref|YP_007281185.1| - 0.14 11.8 0.0 0.33 10.6 0.0 1.6 1 0 0 1 1 1 0 HTH domain ECH PF00378.15 gi|433591690|ref|YP_007281186.1| - 3.8e-49 167.0 0.3 4.3e-49 166.8 0.2 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family PRC PF05239.11 gi|433591691|ref|YP_007281187.1| - 0.037 13.8 1.5 0.096 12.5 1.1 1.7 1 0 0 1 1 1 0 PRC-barrel domain PyrI PF01948.13 gi|433591695|ref|YP_007281191.1| - 1.9e-36 123.9 0.3 2.3e-36 123.6 0.2 1.1 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, allosteric domain PyrI_C PF02748.10 gi|433591695|ref|YP_007281191.1| - 3.4e-16 58.4 1.1 4e-16 58.1 0.2 1.6 2 0 0 2 2 2 1 Aspartate carbamoyltransferase regulatory chain, metal binding domain OTCace_N PF02729.16 gi|433591696|ref|YP_007281192.1| - 1.1e-43 148.3 0.0 3.7e-43 146.5 0.0 1.8 2 0 0 2 2 2 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.19 gi|433591696|ref|YP_007281192.1| - 1.1e-36 126.0 0.0 1.7e-36 125.4 0.0 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain KaiC PF06745.8 gi|433591697|ref|YP_007281193.1| - 7.7e-07 28.4 0.0 0.00018 20.7 0.0 2.1 1 1 1 2 2 2 2 KaiC AAA_25 PF13481.1 gi|433591697|ref|YP_007281193.1| - 0.13 11.6 0.2 16 4.8 0.0 2.3 2 1 0 2 2 2 0 AAA domain FKBP_C PF00254.23 gi|433591698|ref|YP_007281194.1| - 5e-08 32.8 0.8 5e-08 32.8 0.6 2.2 2 1 0 2 2 2 1 FKBP-type peptidyl-prolyl cis-trans isomerase ScdA_N PF04405.9 gi|433591698|ref|YP_007281194.1| - 0.057 12.8 0.9 0.1 12.0 0.1 1.8 2 0 0 2 2 2 0 Domain of Unknown function (DUF542) CYTH PF01928.16 gi|433591699|ref|YP_007281195.1| - 1.1e-43 149.0 6.0 1.2e-43 148.9 4.2 1.0 1 0 0 1 1 1 1 CYTH domain PrcB_C PF14343.1 gi|433591699|ref|YP_007281195.1| - 0.049 13.3 0.6 3.4 7.4 0.1 2.7 2 1 0 2 2 2 0 PrcB C-terminal AdoMet_Synthase PF01941.14 gi|433591700|ref|YP_007281196.1| - 1.1e-176 587.1 8.1 1.3e-176 586.9 5.6 1.0 1 0 0 1 1 1 1 S-adenosylmethionine synthetase (AdoMet synthetase) S-AdoMet_synt_N PF00438.15 gi|433591700|ref|YP_007281196.1| - 0.023 14.9 0.3 0.096 12.9 0.0 2.2 2 0 0 2 2 2 0 S-adenosylmethionine synthetase, N-terminal domain Qn_am_d_aII PF14930.1 gi|433591701|ref|YP_007281197.1| - 0.044 13.7 0.0 0.086 12.7 0.0 1.5 1 0 0 1 1 1 0 Quinohemoprotein amine dehydrogenase, alpha subunit domain II MFS_1 PF07690.11 gi|433591702|ref|YP_007281198.1| - 5.7e-46 156.8 50.8 3.6e-26 91.7 17.8 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily LacY_symp PF01306.14 gi|433591702|ref|YP_007281198.1| - 1.4e-05 23.8 14.9 2.9e-05 22.8 2.7 2.1 2 0 0 2 2 2 2 LacY proton/sugar symporter MFS_1_like PF12832.2 gi|433591702|ref|YP_007281198.1| - 0.028 14.1 5.2 0.13 12.0 0.0 3.2 3 0 0 3 3 3 0 MFS_1 like family OATP PF03137.15 gi|433591702|ref|YP_007281198.1| - 0.053 11.5 1.7 0.11 10.5 1.2 1.4 1 0 0 1 1 1 0 Organic Anion Transporter Polypeptide (OATP) family DUF2427 PF10348.4 gi|433591702|ref|YP_007281198.1| - 0.34 10.5 4.8 0.18 11.4 0.6 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF2427) ThiI PF02568.9 gi|433591703|ref|YP_007281199.1| - 1.2e-40 139.0 0.0 2.2e-40 138.2 0.0 1.4 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) THUMP PF02926.12 gi|433591703|ref|YP_007281199.1| - 4.1e-18 65.6 0.0 7.6e-18 64.7 0.0 1.4 1 0 0 1 1 1 1 THUMP domain QueC PF06508.8 gi|433591703|ref|YP_007281199.1| - 0.00011 21.6 0.0 0.1 11.8 0.0 2.5 2 1 0 2 2 2 2 Queuosine biosynthesis protein QueC Asn_synthase PF00733.16 gi|433591703|ref|YP_007281199.1| - 0.047 13.1 0.0 0.074 12.5 0.0 1.3 1 0 0 1 1 1 0 Asparagine synthase tRNA_Me_trans PF03054.11 gi|433591703|ref|YP_007281199.1| - 0.061 11.8 0.0 0.087 11.3 0.0 1.2 1 0 0 1 1 1 0 tRNA methyl transferase ATP_bind_3 PF01171.15 gi|433591703|ref|YP_007281199.1| - 0.068 12.6 0.1 0.92 8.9 0.0 2.6 1 1 0 1 1 1 0 PP-loop family PALP PF00291.20 gi|433591706|ref|YP_007281202.1| - 1.5e-57 195.1 0.1 1.9e-57 194.8 0.1 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Aminotran_3 PF00202.16 gi|433591707|ref|YP_007281203.1| - 6.3e-65 219.2 0.0 8.3e-65 218.8 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-III DDE_Tnp_1 PF01609.16 gi|433591708|ref|YP_007281204.1| - 0.0077 15.7 0.2 0.031 13.8 0.1 1.9 1 1 0 1 1 1 1 Transposase DDE domain Aldedh PF00171.17 gi|433591709|ref|YP_007281205.1| - 2.9e-172 573.1 0.0 3.4e-172 572.9 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.9 gi|433591709|ref|YP_007281205.1| - 0.11 11.2 0.0 0.24 10.0 0.0 1.5 1 1 0 1 1 1 0 Acyl-CoA reductase (LuxC) DUF1487 PF07368.6 gi|433591709|ref|YP_007281205.1| - 0.16 11.1 0.0 0.28 10.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1487) Thioredoxin PF00085.15 gi|433591710|ref|YP_007281206.1| - 6e-08 32.3 0.0 7.7e-08 31.9 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_7 PF13899.1 gi|433591710|ref|YP_007281206.1| - 1.9e-05 24.5 0.0 2.9e-05 24.0 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin-like Thioredoxin_2 PF13098.1 gi|433591710|ref|YP_007281206.1| - 0.0011 19.0 0.0 0.027 14.6 0.0 2.1 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_9 PF14595.1 gi|433591710|ref|YP_007281206.1| - 0.0013 18.2 0.0 0.0024 17.4 0.0 1.4 1 1 0 1 1 1 1 Thioredoxin Thioredoxin_8 PF13905.1 gi|433591710|ref|YP_007281206.1| - 0.042 13.9 0.0 2.8 8.1 0.0 2.2 1 1 1 2 2 2 0 Thioredoxin-like AhpC-TSA PF00578.16 gi|433591710|ref|YP_007281206.1| - 0.082 12.5 0.0 0.16 11.6 0.0 1.7 1 1 0 1 1 1 0 AhpC/TSA family Metallophos_2 PF12850.2 gi|433591711|ref|YP_007281207.1| - 1.8e-14 53.8 0.0 2.2e-13 50.3 0.0 2.0 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|433591711|ref|YP_007281207.1| - 0.00073 18.9 1.6 0.049 13.0 1.1 2.8 2 1 0 2 2 2 2 Calcineurin-like phosphoesterase Thioredox_DsbH PF03190.10 gi|433591712|ref|YP_007281208.1| - 2.2e-73 245.3 0.1 4.1e-73 244.4 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF255 Thioredoxin_7 PF13899.1 gi|433591712|ref|YP_007281208.1| - 7e-13 48.4 0.0 1.8e-12 47.1 0.0 1.7 1 0 0 1 1 1 1 Thioredoxin-like GlcNAc_2-epim PF07221.6 gi|433591712|ref|YP_007281208.1| - 9.9e-09 34.6 0.3 0.002 17.2 0.0 2.5 2 1 0 2 2 2 2 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) Thioredoxin_2 PF13098.1 gi|433591712|ref|YP_007281208.1| - 0.0033 17.5 0.1 0.012 15.8 0.0 2.0 2 1 0 2 2 2 1 Thioredoxin-like domain Glyco_hydro_88 PF07470.8 gi|433591712|ref|YP_007281208.1| - 0.032 13.2 0.0 0.72 8.8 0.0 2.9 2 2 1 3 3 3 0 Glycosyl Hydrolase Family 88 CHRD PF07452.7 gi|433591713|ref|YP_007281209.1| - 1.2e-13 51.7 0.0 1.8e-13 51.1 0.0 1.3 1 0 0 1 1 1 1 CHRD domain TAT_signal PF10518.4 gi|433591713|ref|YP_007281209.1| - 0.006 16.4 4.3 0.013 15.4 3.0 1.6 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Aconitase PF00330.15 gi|433591714|ref|YP_007281210.1| - 3.1e-130 434.7 0.0 1.8e-90 303.6 0.0 2.1 2 0 0 2 2 2 2 Aconitase family (aconitate hydratase) Aconitase_C PF00694.14 gi|433591714|ref|YP_007281210.1| - 6.4e-40 136.2 0.0 1.1e-39 135.5 0.0 1.4 1 0 0 1 1 1 1 Aconitase C-terminal domain DHFR_1 PF00186.14 gi|433591716|ref|YP_007281212.1| - 2e-51 173.7 0.0 2.2e-51 173.6 0.0 1.0 1 0 0 1 1 1 1 Dihydrofolate reductase Thymidylat_synt PF00303.14 gi|433591717|ref|YP_007281213.1| - 6.4e-96 320.4 0.0 7.4e-96 320.2 0.0 1.0 1 0 0 1 1 1 1 Thymidylate synthase GARS_A PF01071.14 gi|433591719|ref|YP_007281215.1| - 1.3e-52 178.2 0.0 2.5e-52 177.3 0.0 1.5 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain GARS_N PF02844.10 gi|433591719|ref|YP_007281215.1| - 2.7e-26 91.9 0.2 5.8e-26 90.8 0.2 1.6 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, N domain ATP-grasp_4 PF13535.1 gi|433591719|ref|YP_007281215.1| - 2.2e-17 63.3 0.0 5.4e-17 62.1 0.0 1.6 1 0 0 1 1 1 1 ATP-grasp domain GARS_C PF02843.11 gi|433591719|ref|YP_007281215.1| - 9.3e-15 54.5 5.9 1.3e-13 50.9 2.3 2.9 2 1 0 2 2 2 1 Phosphoribosylglycinamide synthetase, C domain ATPgrasp_Ter PF15632.1 gi|433591719|ref|YP_007281215.1| - 7.7e-06 24.8 0.0 4.1e-05 22.4 0.0 2.1 2 1 0 2 2 2 1 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_3 PF02655.9 gi|433591719|ref|YP_007281215.1| - 0.00021 21.1 0.0 0.00052 19.9 0.0 1.6 1 1 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.12 gi|433591719|ref|YP_007281215.1| - 0.044 13.0 0.0 0.097 11.9 0.0 1.6 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain PIN PF01850.16 gi|433591720|ref|YP_007281216.1| - 1.2e-15 57.9 0.7 1.3e-15 57.7 0.5 1.0 1 0 0 1 1 1 1 PIN domain PIN_3 PF13470.1 gi|433591720|ref|YP_007281216.1| - 9.1e-05 23.1 0.1 0.0001 22.9 0.1 1.2 1 0 0 1 1 1 1 PIN domain Antitoxin-MazE PF04014.13 gi|433591721|ref|YP_007281217.1| - 2.4e-08 33.5 0.0 3.4e-08 33.0 0.0 1.3 1 0 0 1 1 1 1 Antidote-toxin recognition MazE DUF1905 PF08922.6 gi|433591721|ref|YP_007281217.1| - 0.097 12.2 0.0 0.14 11.7 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1905) DUF4010 PF13194.1 gi|433591722|ref|YP_007281218.1| - 4.3e-50 169.9 29.7 4.3e-50 169.9 20.6 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF4010) MgtC PF02308.11 gi|433591722|ref|YP_007281218.1| - 2.5e-12 46.7 10.6 2.5e-12 46.7 7.3 3.5 3 3 1 4 4 4 1 MgtC family PadR PF03551.9 gi|433591723|ref|YP_007281219.1| - 1.9e-17 62.7 1.8 2.3e-17 62.5 1.3 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_27 PF13463.1 gi|433591723|ref|YP_007281219.1| - 8.1e-05 22.8 0.0 0.0001 22.5 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_45 PF14947.1 gi|433591723|ref|YP_007281219.1| - 0.0013 18.4 0.1 0.0018 18.0 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DUF1495 PF07381.6 gi|433591723|ref|YP_007281219.1| - 0.019 14.6 0.0 0.03 13.9 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) HTH_34 PF13601.1 gi|433591723|ref|YP_007281219.1| - 0.025 14.6 0.0 0.031 14.2 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain HemN_C PF06969.11 gi|433591723|ref|YP_007281219.1| - 0.071 13.1 0.1 0.11 12.5 0.1 1.4 1 0 0 1 1 1 0 HemN C-terminal domain MarR_2 PF12802.2 gi|433591723|ref|YP_007281219.1| - 0.1 12.2 2.0 3.6 7.3 0.2 2.5 3 0 0 3 3 3 0 MarR family TrmB PF01978.14 gi|433591723|ref|YP_007281219.1| - 0.12 12.1 0.1 0.17 11.5 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB CarboxypepD_reg PF13620.1 gi|433591725|ref|YP_007281221.1| - 0.0025 17.8 7.8 0.077 13.0 1.5 3.3 2 2 0 2 2 2 2 Carboxypeptidase regulatory-like domain DUF4198 PF10670.4 gi|433591725|ref|YP_007281221.1| - 0.077 12.9 7.3 2.7 7.9 5.0 2.2 1 1 0 1 1 1 0 Domain of unknown function (DUF4198) TAT_signal PF10518.4 gi|433591725|ref|YP_007281221.1| - 0.15 12.1 2.0 0.29 11.2 1.4 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence MG1 PF11974.3 gi|433591725|ref|YP_007281221.1| - 0.25 11.9 2.9 4.9 7.7 2.0 2.4 1 1 0 1 1 1 0 Alpha-2-macroglobulin MG1 domain Cna_B PF05738.8 gi|433591725|ref|YP_007281221.1| - 0.25 11.1 20.8 0.16 11.7 4.3 3.9 2 1 1 3 3 3 0 Cna protein B-type domain HypA PF01155.14 gi|433591726|ref|YP_007281222.1| - 0.0087 15.7 0.4 0.019 14.6 0.3 1.6 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family DZR PF12773.2 gi|433591726|ref|YP_007281222.1| - 0.02 14.6 0.3 0.035 13.9 0.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon DUF2072 PF09845.4 gi|433591726|ref|YP_007281222.1| - 0.06 13.2 0.9 0.12 12.2 0.2 1.8 2 0 0 2 2 2 0 Zn-ribbon containing protein (DUF2072) zf-ribbon_3 PF13248.1 gi|433591726|ref|YP_007281222.1| - 0.53 9.5 2.6 5.7 6.2 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|433591726|ref|YP_007281222.1| - 0.71 9.2 4.4 0.91 8.8 2.2 1.9 2 1 0 2 2 2 0 TFIIB zinc-binding UPF0547 PF10571.4 gi|433591726|ref|YP_007281222.1| - 1.7 8.4 3.8 3.9 7.2 0.1 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Zn_Tnp_IS1595 PF12760.2 gi|433591726|ref|YP_007281222.1| - 8.9 6.2 7.8 16 5.4 0.2 2.9 2 1 1 3 3 3 0 Transposase zinc-ribbon domain OPT PF03169.10 gi|433591727|ref|YP_007281223.1| - 1.8e-120 403.2 41.7 2.4e-120 402.8 28.9 1.1 1 0 0 1 1 1 1 OPT oligopeptide transporter protein PqqD PF05402.7 gi|433591728|ref|YP_007281224.1| - 1e-14 54.2 0.0 1.2e-14 54.0 0.0 1.2 1 0 0 1 1 1 1 Coenzyme PQQ synthesis protein D (PqqD) THF_DHG_CYH_C PF02882.14 gi|433591729|ref|YP_007281225.1| - 2.1e-67 225.1 0.7 2.8e-67 224.7 0.5 1.2 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain THF_DHG_CYH PF00763.18 gi|433591729|ref|YP_007281225.1| - 6.7e-39 132.5 0.1 1e-38 131.9 0.0 1.3 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain Abhydrolase_6 PF12697.2 gi|433591730|ref|YP_007281226.1| - 1.2e-43 149.6 2.1 1.4e-43 149.4 1.4 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|433591730|ref|YP_007281226.1| - 3.6e-25 88.8 0.0 6.3e-25 88.0 0.0 1.3 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_5 PF12695.2 gi|433591730|ref|YP_007281226.1| - 3.8e-22 78.6 0.0 4.1e-21 75.2 0.0 2.0 1 1 0 1 1 1 1 Alpha/beta hydrolase family Ndr PF03096.9 gi|433591730|ref|YP_007281226.1| - 3.3e-11 42.1 0.0 4.4e-11 41.8 0.0 1.1 1 0 0 1 1 1 1 Ndr family Peptidase_S9 PF00326.16 gi|433591730|ref|YP_007281226.1| - 4.9e-07 29.1 0.0 0.00021 20.5 0.0 2.2 2 0 0 2 2 2 2 Prolyl oligopeptidase family Abhydrolase_4 PF08386.5 gi|433591730|ref|YP_007281226.1| - 1.5e-05 24.8 0.0 2.6e-05 24.0 0.0 1.3 1 0 0 1 1 1 1 TAP-like protein Abhydrolase_2 PF02230.11 gi|433591730|ref|YP_007281226.1| - 2.2e-05 24.0 0.0 0.0049 16.3 0.0 2.2 2 0 0 2 2 2 2 Phospholipase/Carboxylesterase DLH PF01738.13 gi|433591730|ref|YP_007281226.1| - 0.00013 21.3 0.0 0.0013 18.0 0.0 2.0 2 0 0 2 2 2 1 Dienelactone hydrolase family Thioesterase PF00975.15 gi|433591730|ref|YP_007281226.1| - 0.0021 18.3 0.1 0.0043 17.3 0.1 1.6 1 1 1 2 2 2 1 Thioesterase domain Esterase PF00756.15 gi|433591730|ref|YP_007281226.1| - 0.0041 16.5 0.1 0.0096 15.3 0.0 1.5 1 1 0 1 1 1 1 Putative esterase PhoPQ_related PF10142.4 gi|433591730|ref|YP_007281226.1| - 0.042 12.3 0.0 0.25 9.7 0.0 1.9 2 0 0 2 2 2 0 PhoPQ-activated pathogenicity-related protein FSH1 PF03959.8 gi|433591730|ref|YP_007281226.1| - 0.078 12.4 0.0 1.4 8.3 0.0 2.1 2 0 0 2 2 2 0 Serine hydrolase (FSH1) SHMT PF00464.14 gi|433591731|ref|YP_007281227.1| - 1.7e-156 520.6 0.0 2e-156 520.4 0.0 1.0 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Beta_elim_lyase PF01212.16 gi|433591731|ref|YP_007281227.1| - 9e-09 34.8 0.3 4.2e-07 29.3 0.2 2.2 1 1 0 1 1 1 1 Beta-eliminating lyase Aminotran_1_2 PF00155.16 gi|433591731|ref|YP_007281227.1| - 2.9e-07 29.7 0.0 1.1e-06 27.8 0.0 1.9 1 1 1 2 2 2 1 Aminotransferase class I and II Trypsin_2 PF13365.1 gi|433591731|ref|YP_007281227.1| - 0.018 14.9 0.0 0.031 14.2 0.0 1.6 1 0 0 1 1 1 0 Trypsin-like peptidase domain DegT_DnrJ_EryC1 PF01041.12 gi|433591731|ref|YP_007281227.1| - 0.024 13.6 3.1 0.046 12.7 2.2 1.4 1 1 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family CHAT PF12770.2 gi|433591732|ref|YP_007281228.1| - 0.12 11.4 0.0 0.2 10.7 0.0 1.4 1 1 0 1 1 1 0 CHAT domain DUF3863 PF12979.2 gi|433591733|ref|YP_007281229.1| - 0.085 11.4 0.0 0.095 11.2 0.0 1.1 1 0 0 1 1 1 0 Domain of Unknown Function with PDB structure (DUF3863) DUF3696 PF12476.3 gi|433591733|ref|YP_007281229.1| - 0.13 12.2 0.3 0.23 11.4 0.2 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3696) NUFIP1 PF10453.4 gi|433591733|ref|YP_007281229.1| - 0.15 11.6 0.1 0.21 11.1 0.1 1.2 1 0 0 1 1 1 0 Nuclear fragile X mental retardation-interacting protein 1 (NUFIP1) DUF876 PF05936.7 gi|433591734|ref|YP_007281230.1| - 0.098 11.0 0.0 0.13 10.6 0.0 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF876) RNase_P_p30 PF01876.11 gi|433591735|ref|YP_007281231.1| - 1.3e-33 115.3 0.0 1.6e-33 115.0 0.0 1.1 1 0 0 1 1 1 1 RNase P subunit p30 PHP PF02811.14 gi|433591735|ref|YP_007281231.1| - 1.9e-06 27.7 0.0 2.6e-06 27.3 0.0 1.1 1 0 0 1 1 1 1 PHP domain DUF1643 PF07799.7 gi|433591735|ref|YP_007281231.1| - 0.094 12.4 0.0 0.38 10.4 0.0 1.7 1 1 0 2 2 2 0 Protein of unknown function (DUF1643) Methyltransf_31 PF13847.1 gi|433591736|ref|YP_007281232.1| - 1.7e-15 56.8 0.0 2.5e-15 56.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|433591736|ref|YP_007281232.1| - 2.7e-13 50.4 0.3 4.6e-13 49.7 0.2 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|433591736|ref|YP_007281232.1| - 6.6e-12 45.7 0.2 1.5e-11 44.6 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|433591736|ref|YP_007281232.1| - 3.6e-10 39.3 0.0 6.4e-10 38.5 0.0 1.4 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.7 gi|433591736|ref|YP_007281232.1| - 5.1e-10 39.7 0.0 8.6e-10 38.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|433591736|ref|YP_007281232.1| - 9.6e-10 38.7 0.0 1.8e-09 37.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|433591736|ref|YP_007281232.1| - 3.3e-08 33.4 0.0 7.6e-08 32.2 0.0 1.5 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|433591736|ref|YP_007281232.1| - 4.8e-08 33.0 1.3 7.6e-08 32.4 0.9 1.4 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|433591736|ref|YP_007281232.1| - 2.6e-07 30.1 0.1 3.9e-07 29.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain UPF0020 PF01170.13 gi|433591736|ref|YP_007281232.1| - 0.012 15.2 0.1 0.019 14.5 0.1 1.2 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 PrmA PF06325.8 gi|433591736|ref|YP_007281232.1| - 0.014 14.5 0.2 0.019 14.0 0.1 1.1 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) tRNA_U5-meth_tr PF05958.6 gi|433591736|ref|YP_007281232.1| - 0.062 11.9 0.0 0.091 11.4 0.0 1.3 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase RrnaAD PF00398.15 gi|433591736|ref|YP_007281232.1| - 0.074 12.0 0.0 0.11 11.5 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase DREV PF05219.7 gi|433591736|ref|YP_007281232.1| - 0.12 11.2 0.0 0.18 10.6 0.0 1.2 1 0 0 1 1 1 0 DREV methyltransferase RNase_P_Rpp14 PF01900.14 gi|433591737|ref|YP_007281233.1| - 2.4e-20 72.4 0.0 3.1e-20 72.0 0.0 1.1 1 0 0 1 1 1 1 Rpp14/Pop5 family Proteasome PF00227.21 gi|433591738|ref|YP_007281234.1| - 6.1e-56 188.7 0.0 7.5e-56 188.4 0.0 1.1 1 0 0 1 1 1 1 Proteasome subunit Proteasome_A_N PF10584.4 gi|433591738|ref|YP_007281234.1| - 2.6e-14 52.2 0.1 4.5e-14 51.4 0.1 1.4 1 0 0 1 1 1 1 Proteasome subunit A N-terminal signature SBDS PF01172.13 gi|433591739|ref|YP_007281235.1| - 2.2e-24 85.0 0.1 5.2e-24 83.8 0.0 1.6 2 0 0 2 2 2 1 Shwachman-Bodian-Diamond syndrome (SBDS) protein SBDS_C PF09377.5 gi|433591739|ref|YP_007281235.1| - 3.2e-20 72.0 0.0 4.9e-20 71.4 0.0 1.3 1 0 0 1 1 1 1 SBDS protein C-terminal domain YbjN PF10722.4 gi|433591739|ref|YP_007281235.1| - 0.031 14.2 0.9 3.1 7.8 0.0 2.4 2 0 0 2 2 2 0 Putative bacterial sensory transduction regulator FUN14 PF04930.10 gi|433591740|ref|YP_007281236.1| - 1.8e-13 50.6 3.8 2.8e-13 49.9 2.7 1.3 1 1 0 1 1 1 1 FUN14 family ATPase_gene1 PF09527.5 gi|433591740|ref|YP_007281236.1| - 0.026 14.3 5.2 0.078 12.7 0.8 2.5 2 1 0 2 2 2 0 Putative F0F1-ATPase subunit (ATPase_gene1) DUF4341 PF14241.1 gi|433591740|ref|YP_007281236.1| - 0.12 12.1 0.6 0.12 12.1 0.4 1.9 2 1 0 2 2 2 0 Domain of unknown function (DUF4341) Tmemb_14 PF03647.8 gi|433591740|ref|YP_007281236.1| - 2.3 8.6 9.0 6 7.3 4.7 2.4 1 1 1 2 2 2 0 Transmembrane proteins 14C MMR_HSR1 PF01926.18 gi|433591741|ref|YP_007281237.1| - 6.5e-19 67.9 0.0 1.5e-18 66.8 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU PF00009.22 gi|433591741|ref|YP_007281237.1| - 1.6e-11 44.0 0.0 3.9e-11 42.7 0.0 1.6 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP-bdg_N PF13167.1 gi|433591741|ref|YP_007281237.1| - 4.5e-11 42.7 0.0 1.3e-10 41.2 0.0 1.8 1 0 0 1 1 1 1 GTP-binding GTPase N-terminal cobW PF02492.14 gi|433591741|ref|YP_007281237.1| - 9.5e-07 28.4 0.8 7.8e-05 22.1 0.1 2.3 1 1 1 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain Miro PF08477.8 gi|433591741|ref|YP_007281237.1| - 2.5e-05 24.7 0.0 0.0001 22.8 0.0 2.1 2 0 0 2 2 2 1 Miro-like protein AAA_18 PF13238.1 gi|433591741|ref|YP_007281237.1| - 0.00023 21.4 0.0 0.0028 17.9 0.0 2.7 2 1 1 3 3 3 1 AAA domain FeoB_N PF02421.13 gi|433591741|ref|YP_007281237.1| - 0.00029 20.1 0.4 0.29 10.4 0.1 2.8 4 0 0 4 4 4 2 Ferrous iron transport protein B Arf PF00025.16 gi|433591741|ref|YP_007281237.1| - 0.00053 19.2 0.2 0.29 10.3 0.1 2.4 2 0 0 2 2 2 2 ADP-ribosylation factor family AAA_17 PF13207.1 gi|433591741|ref|YP_007281237.1| - 0.0028 18.4 3.1 0.0073 17.1 0.2 2.9 2 2 0 2 2 2 1 AAA domain PduV-EutP PF10662.4 gi|433591741|ref|YP_007281237.1| - 0.0081 15.6 0.0 0.62 9.5 0.0 2.7 3 0 0 3 3 3 1 Ethanolamine utilisation - propanediol utilisation AAA_16 PF13191.1 gi|433591741|ref|YP_007281237.1| - 0.013 15.4 2.2 0.028 14.4 0.2 2.5 2 1 0 2 2 2 0 AAA ATPase domain AAA_33 PF13671.1 gi|433591741|ref|YP_007281237.1| - 0.016 15.0 0.6 0.19 11.6 0.0 2.7 3 0 0 3 3 3 0 AAA domain ABC_tran PF00005.22 gi|433591741|ref|YP_007281237.1| - 0.025 14.9 0.0 0.069 13.4 0.0 1.9 2 0 0 2 2 2 0 ABC transporter AAA_14 PF13173.1 gi|433591741|ref|YP_007281237.1| - 0.043 13.7 0.0 0.089 12.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain G-alpha PF00503.15 gi|433591741|ref|YP_007281237.1| - 0.044 12.4 1.0 0.078 11.6 0.5 1.5 2 0 0 2 2 2 0 G-protein alpha subunit MobB PF03205.9 gi|433591741|ref|YP_007281237.1| - 0.045 13.4 0.0 0.12 12.0 0.0 1.9 1 1 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B ATP_bind_1 PF03029.12 gi|433591741|ref|YP_007281237.1| - 0.045 13.2 0.1 0.93 8.9 0.0 2.4 1 1 1 2 2 2 0 Conserved hypothetical ATP binding protein AAA_23 PF13476.1 gi|433591741|ref|YP_007281237.1| - 0.047 14.0 2.3 14 5.9 0.0 2.4 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.1 gi|433591741|ref|YP_007281237.1| - 0.073 12.4 1.2 0.58 9.5 0.1 3.1 2 1 1 3 3 3 0 AAA domain CbiA PF01656.18 gi|433591741|ref|YP_007281237.1| - 0.074 12.4 0.2 1.9 7.8 0.1 2.3 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain Dynamin_N PF00350.18 gi|433591741|ref|YP_007281237.1| - 0.15 11.8 1.0 9.3 6.0 0.0 2.8 2 1 1 3 3 3 0 Dynamin family MEDS PF14417.1 gi|433591742|ref|YP_007281238.1| - 1.6e-28 99.1 0.0 2.6e-28 98.4 0.0 1.2 1 0 0 1 1 1 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain HATPase_c PF02518.21 gi|433591742|ref|YP_007281238.1| - 4.4e-09 36.0 0.0 1.3e-08 34.4 0.0 1.8 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.1 gi|433591742|ref|YP_007281238.1| - 3.7e-06 26.7 0.1 1.2e-05 25.0 0.0 2.0 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain HisKA PF00512.20 gi|433591742|ref|YP_007281238.1| - 0.00051 19.9 2.5 0.00075 19.4 0.5 2.3 1 1 1 2 2 2 1 His Kinase A (phospho-acceptor) domain KaiC PF06745.8 gi|433591742|ref|YP_007281238.1| - 0.035 13.2 0.0 0.07 12.2 0.0 1.4 1 0 0 1 1 1 0 KaiC Thiolase_C PF02803.13 gi|433591743|ref|YP_007281239.1| - 1.5e-06 27.5 0.5 5.1e-06 25.9 0.1 1.9 2 0 0 2 2 2 1 Thiolase, C-terminal domain Thiolase_N PF00108.18 gi|433591743|ref|YP_007281239.1| - 9.9e-05 21.4 0.0 0.00026 20.0 0.0 1.8 2 0 0 2 2 2 1 Thiolase, N-terminal domain 5_3_exonuc_N PF02739.11 gi|433591743|ref|YP_007281239.1| - 0.0041 16.5 0.0 0.18 11.1 0.0 2.3 2 0 0 2 2 2 1 5'-3' exonuclease, N-terminal resolvase-like domain ketoacyl-synt PF00109.21 gi|433591743|ref|YP_007281239.1| - 0.21 11.0 3.4 1.5 8.2 0.9 2.4 1 1 1 2 2 2 0 Beta-ketoacyl synthase, N-terminal domain DUF35 PF01796.12 gi|433591744|ref|YP_007281240.1| - 3.5e-06 27.1 0.9 5.2e-06 26.5 0.6 1.2 1 0 0 1 1 1 1 DUF35 OB-fold domain TolB_N PF04052.8 gi|433591744|ref|YP_007281240.1| - 0.016 15.2 0.0 0.022 14.8 0.0 1.2 1 0 0 1 1 1 0 TolB amino-terminal domain PilJ PF13675.1 gi|433591745|ref|YP_007281241.1| - 0.06 13.6 9.6 0.16 12.3 4.0 2.6 1 1 2 3 3 3 0 Type IV pili methyl-accepting chemotaxis transducer N-term HAD_2 PF13419.1 gi|433591745|ref|YP_007281241.1| - 0.11 12.7 0.3 0.21 11.7 0.2 1.5 1 0 0 1 1 1 0 Haloacid dehalogenase-like hydrolase DUF4510 PF14971.1 gi|433591745|ref|YP_007281241.1| - 3 8.0 9.9 1.3 9.1 4.1 2.0 1 1 0 2 2 2 0 Domain of unknown function (DUF4510) DUF883 PF05957.8 gi|433591745|ref|YP_007281241.1| - 3.3 8.1 13.7 1.3 9.4 1.3 3.3 3 1 1 4 4 4 0 Bacterial protein of unknown function (DUF883) RNase_H_2 PF13482.1 gi|433591746|ref|YP_007281242.1| - 2.2e-32 112.1 0.0 2.8e-32 111.7 0.0 1.2 1 0 0 1 1 1 1 RNase_H superfamily DNA_pol_A_exo1 PF01612.15 gi|433591746|ref|YP_007281242.1| - 0.043 13.2 0.0 0.063 12.7 0.0 1.2 1 0 0 1 1 1 0 3'-5' exonuclease HHH_5 PF14520.1 gi|433591746|ref|YP_007281242.1| - 0.066 13.3 0.0 0.15 12.2 0.0 1.7 1 0 0 1 1 1 0 Helix-hairpin-helix domain DNA_pol_B_exo2 PF10108.4 gi|433591746|ref|YP_007281242.1| - 0.12 11.9 0.0 0.31 10.5 0.0 1.7 2 0 0 2 2 2 0 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB 4HBT_2 PF13279.1 gi|433591747|ref|YP_007281243.1| - 5.7e-16 59.0 0.0 7.1e-16 58.7 0.0 1.0 1 0 0 1 1 1 1 Thioesterase-like superfamily 4HBT PF03061.17 gi|433591747|ref|YP_007281243.1| - 3.3e-15 55.9 0.1 4.4e-15 55.5 0.1 1.2 1 0 0 1 1 1 1 Thioesterase superfamily Acyl-ACP_TE PF01643.12 gi|433591747|ref|YP_007281243.1| - 1.1e-10 40.9 0.1 1.6e-10 40.4 0.0 1.2 1 0 0 1 1 1 1 Acyl-ACP thioesterase DUF2165 PF09933.4 gi|433591750|ref|YP_007281246.1| - 1.2 8.8 5.8 0.43 10.2 1.4 2.4 2 0 0 2 2 2 0 Predicted small integral membrane protein (DUF2165) HTH_10 PF04967.7 gi|433591751|ref|YP_007281247.1| - 3.2e-15 55.4 0.0 6.4e-15 54.4 0.0 1.5 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4 PF04545.11 gi|433591751|ref|YP_007281247.1| - 5.9e-07 28.7 0.3 1.7e-06 27.2 0.2 1.8 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4_2 PF08281.7 gi|433591751|ref|YP_007281247.1| - 0.00049 19.5 0.2 0.0067 15.8 0.1 2.4 1 1 0 1 1 1 1 Sigma-70, region 4 HTH_AsnC-type PF13404.1 gi|433591751|ref|YP_007281247.1| - 0.00063 19.2 0.1 0.0015 18.0 0.1 1.6 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.1 gi|433591751|ref|YP_007281247.1| - 0.0011 18.3 0.0 0.0022 17.3 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|433591751|ref|YP_007281247.1| - 0.0025 17.4 0.0 0.0058 16.2 0.0 1.6 1 0 0 1 1 1 1 MarR family TetR_N PF00440.18 gi|433591751|ref|YP_007281247.1| - 0.029 14.0 0.1 0.086 12.4 0.1 1.8 1 1 0 1 1 1 0 Bacterial regulatory proteins, tetR family HTH_20 PF12840.2 gi|433591752|ref|YP_007281248.1| - 0.015 15.1 1.4 0.057 13.2 1.0 1.9 1 1 0 1 1 1 0 Helix-turn-helix domain Desmo_N PF06771.6 gi|433591752|ref|YP_007281248.1| - 0.11 12.3 0.0 0.2 11.6 0.0 1.4 1 0 0 1 1 1 0 Viral Desmoplakin N-terminus Na_H_Exchanger PF00999.16 gi|433591753|ref|YP_007281249.1| - 4.7e-38 130.6 28.7 5.7e-38 130.4 19.9 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family TAT_signal PF10518.4 gi|433591754|ref|YP_007281250.1| - 0.0048 16.7 2.9 0.0048 16.7 2.0 2.2 3 0 0 3 3 3 1 TAT (twin-arginine translocation) pathway signal sequence UCR_Fe-S_N PF10399.4 gi|433591754|ref|YP_007281250.1| - 0.23 10.6 2.1 0.49 9.6 1.5 1.5 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal ThiS PF02597.15 gi|433591756|ref|YP_007281252.1| - 0.00028 21.2 0.0 0.0013 19.1 0.0 1.9 1 1 0 1 1 1 1 ThiS family Radical_SAM PF04055.16 gi|433591758|ref|YP_007281254.1| - 2.2e-19 70.2 0.0 5.6e-19 68.9 0.0 1.7 1 1 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|433591758|ref|YP_007281254.1| - 1.6e-10 41.2 0.0 4.6e-10 39.7 0.0 1.7 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|433591758|ref|YP_007281254.1| - 3.6e-09 36.6 0.0 1.2e-08 34.9 0.0 1.9 3 0 0 3 3 3 1 4Fe-4S single cluster domain AP_endonuc_2 PF01261.19 gi|433591758|ref|YP_007281254.1| - 0.039 13.2 0.1 0.5 9.6 0.0 2.4 2 1 0 2 2 2 0 Xylose isomerase-like TIM barrel OmpA PF00691.15 gi|433591758|ref|YP_007281254.1| - 0.044 14.1 0.0 0.35 11.3 0.0 2.1 2 0 0 2 2 2 0 OmpA family PaaB PF06243.6 gi|433591759|ref|YP_007281255.1| - 1.6e-15 56.9 0.2 1.9e-15 56.7 0.1 1.1 1 0 0 1 1 1 1 Phenylacetic acid degradation B Radical_SAM PF04055.16 gi|433591760|ref|YP_007281256.1| - 6.2e-21 75.2 0.0 8.8e-21 74.7 0.0 1.2 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|433591760|ref|YP_007281256.1| - 0.00044 20.3 0.0 0.00088 19.3 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|433591760|ref|YP_007281256.1| - 0.0016 18.4 0.0 0.0031 17.5 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain DAGK_cat PF00781.19 gi|433591760|ref|YP_007281256.1| - 0.0042 16.5 0.6 0.01 15.2 0.1 1.8 2 0 0 2 2 2 1 Diacylglycerol kinase catalytic domain TP_methylase PF00590.15 gi|433591760|ref|YP_007281256.1| - 0.0055 16.4 0.0 0.02 14.6 0.0 1.9 2 0 0 2 2 2 1 Tetrapyrrole (Corrin/Porphyrin) Methylases DUF1906 PF08924.6 gi|433591760|ref|YP_007281256.1| - 0.082 12.7 0.0 0.14 12.0 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1906) CPSase_L_D2 PF02786.12 gi|433591761|ref|YP_007281257.1| - 2.9e-69 232.5 0.2 1.3e-68 230.4 0.1 2.0 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_chain PF00289.17 gi|433591761|ref|YP_007281257.1| - 2.3e-42 143.5 0.1 1.1e-41 141.4 0.1 2.2 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, N-terminal domain Biotin_carb_C PF02785.14 gi|433591761|ref|YP_007281257.1| - 1.5e-34 118.1 0.0 5.9e-34 116.2 0.0 2.1 2 0 0 2 2 2 1 Biotin carboxylase C-terminal domain Biotin_lipoyl PF00364.17 gi|433591761|ref|YP_007281257.1| - 4.7e-17 61.3 6.1 4.7e-17 61.3 4.2 2.2 2 0 0 2 2 2 1 Biotin-requiring enzyme ATP-grasp_4 PF13535.1 gi|433591761|ref|YP_007281257.1| - 5.5e-13 49.0 0.2 1.2e-12 47.9 0.1 1.6 1 0 0 1 1 1 1 ATP-grasp domain Biotin_lipoyl_2 PF13533.1 gi|433591761|ref|YP_007281257.1| - 1.8e-10 40.3 3.3 1e-05 25.0 0.1 3.1 2 1 1 3 3 3 2 Biotin-lipoyl like ATPgrasp_Ter PF15632.1 gi|433591761|ref|YP_007281257.1| - 5.8e-09 35.1 0.0 2.2e-07 29.9 0.0 2.1 2 0 0 2 2 2 1 ATP-grasp in the biosynthetic pathway with Ter operon Dala_Dala_lig_C PF07478.8 gi|433591761|ref|YP_007281257.1| - 2.4e-06 27.0 0.0 4.9e-06 26.0 0.0 1.5 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus HlyD PF00529.15 gi|433591761|ref|YP_007281257.1| - 1.2e-05 24.8 3.5 0.0051 16.1 0.3 2.4 1 1 1 2 2 2 2 HlyD family secretion protein ATP-grasp PF02222.17 gi|433591761|ref|YP_007281257.1| - 3.3e-05 23.3 0.0 6e-05 22.4 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain HlyD_2 PF12700.2 gi|433591761|ref|YP_007281257.1| - 4.7e-05 22.7 1.9 0.0027 16.9 0.1 2.4 1 1 1 2 2 2 2 HlyD family secretion protein GARS_A PF01071.14 gi|433591761|ref|YP_007281257.1| - 0.00051 19.6 0.0 0.0011 18.6 0.0 1.5 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain HlyD_3 PF13437.1 gi|433591761|ref|YP_007281257.1| - 0.00056 20.2 1.0 0.69 10.2 0.0 2.8 2 0 0 2 2 2 2 HlyD family secretion protein YqfD PF06898.6 gi|433591761|ref|YP_007281257.1| - 0.036 12.7 0.5 0.071 11.7 0.4 1.4 1 0 0 1 1 1 0 Putative stage IV sporulation protein YqfD GCV_H PF01597.14 gi|433591761|ref|YP_007281257.1| - 0.13 11.9 1.3 0.31 10.7 0.9 1.7 1 0 0 1 1 1 0 Glycine cleavage H-protein PTS_EIIA_1 PF00358.15 gi|433591761|ref|YP_007281257.1| - 0.13 11.8 3.4 0.82 9.2 0.1 3.1 3 1 1 4 4 4 0 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 Band_7 PF01145.20 gi|433591762|ref|YP_007281258.1| - 1.1e-36 126.4 2.6 1.1e-36 126.4 1.8 1.7 2 0 0 2 2 2 1 SPFH domain / Band 7 family Band_7_1 PF13421.1 gi|433591762|ref|YP_007281258.1| - 0.01 15.3 0.0 0.019 14.5 0.0 1.4 1 0 0 1 1 1 0 SPFH domain-Band 7 family YkyA PF10368.4 gi|433591762|ref|YP_007281258.1| - 0.089 12.1 1.3 0.2 10.9 0.9 1.6 1 0 0 1 1 1 0 Putative cell-wall binding lipoprotein OAD_gamma PF04277.8 gi|433591763|ref|YP_007281259.1| - 1.5 9.2 6.8 0.15 12.4 1.8 1.7 1 1 0 1 1 1 0 Oxaloacetate decarboxylase, gamma chain Carboxyl_trans PF01039.17 gi|433591764|ref|YP_007281260.1| - 1.9e-198 659.8 0.0 2.1e-198 659.6 0.0 1.0 1 0 0 1 1 1 1 Carboxyl transferase domain MdcE PF06833.6 gi|433591764|ref|YP_007281260.1| - 2.3e-05 23.7 0.0 5e-05 22.6 0.0 1.5 2 0 0 2 2 2 1 Malonate decarboxylase gamma subunit (MdcE) DDE_Tnp_1 PF01609.16 gi|433591765|ref|YP_007281261.1| - 1.3e-25 90.1 0.0 1.8e-25 89.7 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_2 PF04693.7 gi|433591765|ref|YP_007281261.1| - 0.0012 17.9 0.1 0.0018 17.3 0.1 1.2 1 0 0 1 1 1 1 Archaeal putative transposase ISC1217 DDE_Tnp_1_2 PF13586.1 gi|433591765|ref|YP_007281261.1| - 0.0082 16.3 0.0 0.023 14.8 0.0 1.7 1 0 0 1 1 1 1 Transposase DDE domain DUF2249 PF10006.4 gi|433591765|ref|YP_007281261.1| - 0.022 14.3 0.2 0.067 12.7 0.1 1.9 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2249) adh_short PF00106.20 gi|433591766|ref|YP_007281262.1| - 5.5e-23 81.6 0.5 7.6e-23 81.2 0.3 1.2 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|433591766|ref|YP_007281262.1| - 4e-16 59.5 0.0 2.2e-15 57.0 0.0 1.8 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase Epimerase PF01370.16 gi|433591766|ref|YP_007281262.1| - 4.8e-08 32.7 0.0 8.4e-08 31.9 0.0 1.6 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family KR PF08659.5 gi|433591766|ref|YP_007281262.1| - 2.1e-07 30.7 0.3 3.2e-07 30.2 0.2 1.2 1 0 0 1 1 1 1 KR domain 3Beta_HSD PF01073.14 gi|433591766|ref|YP_007281262.1| - 0.14 10.8 0.0 0.19 10.3 0.0 1.2 1 0 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family Response_reg PF00072.19 gi|433591767|ref|YP_007281263.1| - 1e-13 51.2 0.0 1.3e-13 50.9 0.0 1.1 1 0 0 1 1 1 1 Response regulator receiver domain GDPD PF03009.12 gi|433591768|ref|YP_007281264.1| - 3.1e-27 95.7 0.1 4e-26 92.0 0.1 2.0 1 1 0 1 1 1 1 Glycerophosphoryl diester phosphodiesterase family EAL PF00563.15 gi|433591768|ref|YP_007281264.1| - 0.14 11.6 0.0 0.35 10.3 0.0 1.6 2 0 0 2 2 2 0 EAL domain UPF0047 PF01894.12 gi|433591769|ref|YP_007281265.1| - 1.2e-34 118.5 0.0 1.4e-34 118.3 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 HEAT_2 PF13646.1 gi|433591770|ref|YP_007281266.1| - 1.1e-18 67.2 21.0 1.1e-08 35.2 0.4 4.2 1 1 2 4 4 4 3 HEAT repeats HEAT PF02985.17 gi|433591770|ref|YP_007281266.1| - 1.3e-11 43.5 13.9 0.0089 16.0 0.1 6.4 6 0 0 6 6 6 4 HEAT repeat HEAT_EZ PF13513.1 gi|433591770|ref|YP_007281266.1| - 1.8e-09 37.7 32.6 2.1e-05 24.8 1.6 7.0 2 2 6 8 8 8 4 HEAT-like repeat Arm PF00514.18 gi|433591770|ref|YP_007281266.1| - 3.2e-07 29.9 12.5 0.067 13.0 0.1 6.5 6 1 0 6 6 6 2 Armadillo/beta-catenin-like repeat Adaptin_N PF01602.15 gi|433591770|ref|YP_007281266.1| - 1.6e-06 26.7 0.0 6.2e-06 24.8 0.0 1.9 2 0 0 2 2 2 1 Adaptin N terminal region Cnd1 PF12717.2 gi|433591770|ref|YP_007281266.1| - 1.4e-05 25.0 0.0 0.0028 17.5 0.0 2.8 2 1 0 2 2 2 1 non-SMC mitotic condensation complex subunit 1 Cohesin_HEAT PF12765.2 gi|433591770|ref|YP_007281266.1| - 0.24 11.4 3.4 9.9 6.2 0.0 3.7 3 0 0 3 3 3 0 HEAT repeat associated with sister chromatid cohesion SpoVR PF04293.8 gi|433591771|ref|YP_007281267.1| - 1e-78 264.6 5.2 1.5e-60 204.8 0.2 3.1 3 0 0 3 3 3 3 SpoVR like protein LAGLIDADG_3 PF14528.1 gi|433591771|ref|YP_007281267.1| - 4.6e-20 71.6 0.1 2.9e-13 49.8 0.0 2.8 2 0 0 2 2 2 2 LAGLIDADG-like domain Intein_splicing PF14890.1 gi|433591771|ref|YP_007281267.1| - 3.6e-13 49.1 0.0 6.1e-12 45.0 0.0 2.1 1 1 0 1 1 1 1 Intein splicing domain LacI PF00356.16 gi|433591771|ref|YP_007281267.1| - 0.0011 18.5 0.8 0.0024 17.4 0.1 2.0 2 0 0 2 2 2 1 Bacterial regulatory proteins, lacI family TetR_N PF00440.18 gi|433591771|ref|YP_007281267.1| - 0.073 12.7 0.0 0.18 11.4 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family HTH_Tnp_ISL3 PF13542.1 gi|433591771|ref|YP_007281267.1| - 0.12 11.6 0.0 0.36 10.0 0.0 1.9 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 DUF444 PF04285.7 gi|433591772|ref|YP_007281268.1| - 1e-89 301.1 0.1 1.2e-89 300.9 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF444) Tautomerase_2 PF14552.1 gi|433591772|ref|YP_007281268.1| - 0.1 12.6 0.1 6.2 6.9 0.0 2.6 2 0 0 2 2 2 0 Tautomerase enzyme AAA_PrkA PF08298.6 gi|433591773|ref|YP_007281269.1| - 2.1e-12 46.4 0.0 0.00039 19.2 0.0 3.6 3 1 0 3 3 3 3 PrkA AAA domain PrkA PF06798.7 gi|433591773|ref|YP_007281269.1| - 9.2e-08 31.6 1.6 4.1e-07 29.5 0.3 2.3 2 0 0 2 2 2 1 PrkA serine protein kinase C-terminal domain PrkA PF06798.7 gi|433591774|ref|YP_007281270.1| - 2.5e-75 253.0 6.5 2.5e-75 253.0 4.5 2.0 2 0 0 2 2 2 1 PrkA serine protein kinase C-terminal domain AAA_PrkA PF08298.6 gi|433591774|ref|YP_007281270.1| - 4.6e-64 216.3 0.1 7.2e-64 215.7 0.0 1.3 1 0 0 1 1 1 1 PrkA AAA domain AAA_5 PF07728.9 gi|433591774|ref|YP_007281270.1| - 0.024 14.3 0.1 3.3 7.4 0.2 2.8 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) UPF0179 PF03684.8 gi|433591777|ref|YP_007281273.1| - 4.3e-49 165.7 0.1 4.8e-49 165.6 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0179) DDE_Tnp_1_6 PF13751.1 gi|433591777|ref|YP_007281273.1| - 0.002 18.1 0.1 0.0045 16.9 0.0 1.6 2 0 0 2 2 2 1 Transposase DDE domain HxlR PF01638.12 gi|433591778|ref|YP_007281274.1| - 3.3e-21 74.7 0.0 3.9e-21 74.4 0.0 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_34 PF13601.1 gi|433591778|ref|YP_007281274.1| - 5.4e-07 29.5 0.0 7.4e-07 29.1 0.0 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_27 PF13463.1 gi|433591778|ref|YP_007281274.1| - 3.9e-06 27.0 0.0 5.6e-06 26.5 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_5 PF01022.15 gi|433591778|ref|YP_007281274.1| - 0.0001 21.8 0.0 0.00014 21.4 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|433591778|ref|YP_007281274.1| - 0.0016 18.0 0.1 0.0026 17.3 0.0 1.2 1 0 0 1 1 1 1 MarR family Trp_repressor PF01371.14 gi|433591778|ref|YP_007281274.1| - 0.0033 17.2 0.0 0.0044 16.9 0.0 1.2 1 0 0 1 1 1 1 Trp repressor protein MarR PF01047.17 gi|433591778|ref|YP_007281274.1| - 0.0044 16.6 0.0 0.0078 15.8 0.0 1.4 1 0 0 1 1 1 1 MarR family PadR PF03551.9 gi|433591778|ref|YP_007281274.1| - 0.0071 16.0 0.0 0.01 15.6 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family TrmB PF01978.14 gi|433591778|ref|YP_007281274.1| - 0.0098 15.5 0.0 0.013 15.1 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_45 PF14947.1 gi|433591778|ref|YP_007281274.1| - 0.013 15.2 0.0 0.019 14.7 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_20 PF12840.2 gi|433591778|ref|YP_007281274.1| - 0.033 13.9 0.1 0.049 13.4 0.1 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain Flavin_Reduct PF01613.13 gi|433591779|ref|YP_007281275.1| - 9.7e-27 93.7 0.6 1.3e-26 93.3 0.4 1.1 1 0 0 1 1 1 1 Flavin reductase like domain Polyketide_cyc2 PF10604.4 gi|433591780|ref|YP_007281276.1| - 2.9e-12 46.9 2.5 3.9e-12 46.5 1.7 1.1 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc PF03364.15 gi|433591780|ref|YP_007281276.1| - 2.2e-05 24.4 0.2 3.3e-05 23.8 0.1 1.3 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport DUF3931 PF13082.1 gi|433591780|ref|YP_007281276.1| - 0.16 11.8 0.0 0.28 11.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3931) ABC_tran PF00005.22 gi|433591781|ref|YP_007281277.1| - 6e-29 101.0 0.0 8.7e-29 100.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|433591781|ref|YP_007281277.1| - 2.2e-15 57.4 0.1 1.9e-09 37.9 0.0 2.1 1 1 1 2 2 2 2 AAA domain DUF4162 PF13732.1 gi|433591781|ref|YP_007281277.1| - 5.3e-06 26.8 0.0 1e-05 25.9 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_23 PF13476.1 gi|433591781|ref|YP_007281277.1| - 0.0012 19.1 0.2 0.0021 18.4 0.1 1.3 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.1 gi|433591781|ref|YP_007281277.1| - 0.0014 18.2 0.5 0.0038 16.8 0.1 2.0 2 1 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|433591781|ref|YP_007281277.1| - 0.0016 18.1 0.0 0.0042 16.7 0.0 1.8 1 0 0 1 1 1 1 Part of AAA domain AAA_22 PF13401.1 gi|433591781|ref|YP_007281277.1| - 0.0057 16.7 0.1 0.02 15.0 0.1 1.8 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|433591781|ref|YP_007281277.1| - 0.0078 15.7 0.1 0.014 14.8 0.1 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|433591781|ref|YP_007281277.1| - 0.02 13.9 0.0 0.5 9.3 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain SRP54 PF00448.17 gi|433591781|ref|YP_007281277.1| - 0.02 14.3 0.9 0.036 13.4 0.6 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_17 PF13207.1 gi|433591781|ref|YP_007281277.1| - 0.023 15.5 0.9 0.07 13.9 0.6 2.2 1 1 0 1 1 1 0 AAA domain NTPase_1 PF03266.10 gi|433591781|ref|YP_007281277.1| - 0.029 14.0 1.0 0.27 10.9 0.1 2.6 2 1 1 3 3 3 0 NTPase AAA_25 PF13481.1 gi|433591781|ref|YP_007281277.1| - 0.037 13.4 0.3 0.11 11.8 0.2 1.8 1 1 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|433591781|ref|YP_007281277.1| - 0.041 13.3 0.5 0.64 9.4 0.2 2.2 1 1 1 2 2 2 0 AAA-like domain AAA_16 PF13191.1 gi|433591781|ref|YP_007281277.1| - 0.043 13.8 0.0 0.08 12.9 0.0 1.6 1 1 0 1 1 1 0 AAA ATPase domain MobB PF03205.9 gi|433591781|ref|YP_007281277.1| - 0.045 13.4 0.5 0.084 12.5 0.0 1.7 2 0 0 2 2 1 0 Molybdopterin guanine dinucleotide synthesis protein B SMC_N PF02463.14 gi|433591781|ref|YP_007281277.1| - 0.058 12.6 0.3 3 7.0 0.1 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA PF00004.24 gi|433591781|ref|YP_007281277.1| - 0.064 13.4 0.3 0.22 11.7 0.2 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_24 PF13479.1 gi|433591781|ref|YP_007281277.1| - 0.1 12.1 0.7 2.3 7.7 0.2 2.4 3 0 0 3 3 3 0 AAA domain AAA_33 PF13671.1 gi|433591781|ref|YP_007281277.1| - 0.11 12.3 0.3 0.24 11.2 0.2 1.9 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|433591781|ref|YP_007281277.1| - 0.12 12.3 1.9 0.38 10.6 0.6 2.3 2 1 0 2 2 2 0 AAA domain Form_Nir_trans PF01226.12 gi|433591782|ref|YP_007281278.1| - 1.4e-55 187.8 11.7 1.8e-55 187.5 8.1 1.1 1 0 0 1 1 1 1 Formate/nitrite transporter Usp PF00582.21 gi|433591782|ref|YP_007281278.1| - 1.8e-15 57.3 7.7 2.2e-08 34.3 0.0 3.2 3 0 0 3 3 3 2 Universal stress protein family Aldo_ket_red PF00248.16 gi|433591783|ref|YP_007281279.1| - 9.4e-72 241.2 0.0 1.1e-71 241.0 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family Lipase_GDSL_2 PF13472.1 gi|433591783|ref|YP_007281279.1| - 0.0067 16.5 0.1 0.48 10.5 0.0 2.9 2 1 1 3 3 3 1 GDSL-like Lipase/Acylhydrolase family DUF2892 PF11127.3 gi|433591784|ref|YP_007281280.1| - 1.3e-14 53.7 3.8 1.6e-14 53.4 2.6 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2892) DUF2798 PF11391.3 gi|433591784|ref|YP_007281280.1| - 0.031 14.0 1.0 0.033 13.9 0.1 1.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2798) DUF677 PF05055.7 gi|433591784|ref|YP_007281280.1| - 0.22 10.1 0.8 0.23 10.1 0.6 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF677) DUF3040 PF11239.3 gi|433591784|ref|YP_007281280.1| - 1.1 9.3 3.9 1.2 9.1 2.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3040) VPEP PF07589.6 gi|433591784|ref|YP_007281280.1| - 6.6 6.7 9.4 4.4 7.3 1.0 2.3 2 0 0 2 2 2 0 PEP-CTERM motif HTH_10 PF04967.7 gi|433591785|ref|YP_007281281.1| - 1.3e-16 59.8 0.0 2e-16 59.3 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4_2 PF08281.7 gi|433591785|ref|YP_007281281.1| - 0.0082 15.5 0.2 0.5 9.8 0.0 2.3 2 0 0 2 2 2 2 Sigma-70, region 4 B2 PF11473.3 gi|433591785|ref|YP_007281281.1| - 0.045 13.3 0.0 0.098 12.2 0.0 1.6 1 0 0 1 1 1 0 RNA binding protein B2 Usp PF00582.21 gi|433591786|ref|YP_007281282.1| - 1e-60 203.9 11.6 2.3e-30 105.6 1.2 2.0 2 0 0 2 2 2 2 Universal stress protein family Aldo_ket_red PF00248.16 gi|433591786|ref|YP_007281282.1| - 0.12 11.1 0.0 11 4.7 0.0 2.1 2 0 0 2 2 2 0 Aldo/keto reductase family CBS PF00571.23 gi|433591788|ref|YP_007281284.1| - 4.5e-21 74.3 0.1 5.1e-12 45.3 0.0 2.4 2 0 0 2 2 2 2 CBS domain HTH_31 PF13560.1 gi|433591788|ref|YP_007281284.1| - 7.6e-13 48.4 1.7 2.1e-12 47.0 1.2 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.17 gi|433591788|ref|YP_007281284.1| - 1.1e-10 41.1 0.0 2.4e-10 40.0 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.2 gi|433591788|ref|YP_007281284.1| - 8.3e-10 38.5 0.0 1.6e-09 37.6 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_37 PF13744.1 gi|433591788|ref|YP_007281284.1| - 0.0002 21.1 0.1 0.00071 19.3 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_25 PF13413.1 gi|433591788|ref|YP_007281284.1| - 0.00049 19.6 2.1 0.0015 18.1 0.0 2.7 3 1 1 4 4 4 1 Helix-turn-helix domain HTH_26 PF13443.1 gi|433591788|ref|YP_007281284.1| - 0.0032 17.6 0.0 0.0078 16.3 0.0 1.7 1 1 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_24 PF13412.1 gi|433591788|ref|YP_007281284.1| - 0.078 12.3 1.6 0.9 8.9 0.0 2.9 4 0 0 4 4 4 0 Winged helix-turn-helix DNA-binding DUF555 PF04475.7 gi|433591789|ref|YP_007281285.1| - 1e-47 160.2 0.1 1.2e-47 160.0 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF555) zinc_ribbon_2 PF13240.1 gi|433591789|ref|YP_007281285.1| - 0.1 12.0 0.2 0.18 11.3 0.1 1.4 1 0 0 1 1 1 0 zinc-ribbon domain BTP PF05232.7 gi|433591790|ref|YP_007281286.1| - 0.023 14.4 0.9 0.026 14.2 0.6 1.1 1 0 0 1 1 1 0 Bacterial Transmembrane Pair family HTH_20 PF12840.2 gi|433591792|ref|YP_007281288.1| - 3.7e-06 26.6 0.0 6.6e-06 25.8 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|433591792|ref|YP_007281288.1| - 6.4e-05 22.5 0.0 0.00013 21.6 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|433591792|ref|YP_007281288.1| - 0.00051 20.3 0.0 0.001 19.3 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.14 gi|433591792|ref|YP_007281288.1| - 0.0012 18.4 0.0 0.0017 18.0 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|433591792|ref|YP_007281288.1| - 0.0014 18.3 0.0 0.0022 17.6 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|433591792|ref|YP_007281288.1| - 0.0028 17.1 0.0 0.0049 16.4 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain Fe_dep_repress PF01325.14 gi|433591792|ref|YP_007281288.1| - 0.031 14.2 0.0 0.047 13.6 0.0 1.3 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain DUF2250 PF10007.4 gi|433591792|ref|YP_007281288.1| - 0.1 12.5 0.0 0.15 11.9 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) Proteasome PF00227.21 gi|433591793|ref|YP_007281289.1| - 1.2e-43 148.6 0.1 1.4e-43 148.4 0.1 1.0 1 0 0 1 1 1 1 Proteasome subunit GFO_IDH_MocA PF01408.17 gi|433591794|ref|YP_007281290.1| - 5.2e-31 107.6 0.4 7.1e-30 103.9 0.0 2.2 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|433591794|ref|YP_007281290.1| - 7.2e-08 32.2 0.0 1.5e-07 31.2 0.0 1.6 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain NAD_binding_2 PF03446.10 gi|433591794|ref|YP_007281290.1| - 0.00041 20.2 0.2 0.002 18.0 0.0 2.1 2 1 1 3 3 3 1 NAD binding domain of 6-phosphogluconate dehydrogenase IlvN PF07991.7 gi|433591794|ref|YP_007281290.1| - 0.0017 17.7 0.1 0.004 16.5 0.0 1.6 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, catalytic domain 2-Hacid_dh_C PF02826.14 gi|433591794|ref|YP_007281290.1| - 0.0052 15.9 0.0 0.011 14.9 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CoA_binding PF02629.14 gi|433591794|ref|YP_007281290.1| - 0.12 12.8 0.1 0.49 10.9 0.0 2.0 2 0 0 2 2 2 0 CoA binding domain ThuA PF06283.6 gi|433591795|ref|YP_007281291.1| - 4e-48 163.9 0.1 4.5e-48 163.8 0.0 1.0 1 0 0 1 1 1 1 Trehalose utilisation DUF389 PF04087.9 gi|433591796|ref|YP_007281292.1| - 3.2e-35 121.0 18.6 3.2e-35 121.0 12.9 2.3 3 0 0 3 3 3 1 Domain of unknown function (DUF389) PgaD PF13994.1 gi|433591796|ref|YP_007281292.1| - 0.017 14.6 4.2 0.041 13.3 0.2 2.3 2 0 0 2 2 2 0 PgaD-like protein IF-2B PF01008.12 gi|433591797|ref|YP_007281293.1| - 6.3e-46 156.6 0.7 7.5e-46 156.3 0.5 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family DUF1664 PF07889.7 gi|433591797|ref|YP_007281293.1| - 0.092 12.5 1.7 0.12 12.1 0.2 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) ARL2_Bind_BART PF11527.3 gi|433591798|ref|YP_007281294.1| - 0.13 12.0 1.0 0.29 10.9 0.6 1.7 1 1 1 2 2 2 0 The ARF-like 2 binding protein BART DUF4296 PF14129.1 gi|433591798|ref|YP_007281294.1| - 2.5 8.3 5.2 7 6.8 1.6 2.3 2 1 0 2 2 2 0 Domain of unknown function (DUF4296) Acetone_carb_G PF08882.6 gi|433591799|ref|YP_007281295.1| - 0.035 14.1 0.2 3.4 7.7 0.1 2.2 1 1 1 2 2 2 0 Acetone carboxylase gamma subunit DUF2296 PF10058.4 gi|433591799|ref|YP_007281295.1| - 0.094 12.4 0.2 0.3 10.8 0.1 1.8 2 0 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) zf-HIT PF04438.11 gi|433591799|ref|YP_007281295.1| - 0.097 12.3 0.6 0.27 10.8 0.2 1.8 2 0 0 2 2 2 0 HIT zinc finger ParA PF10609.4 gi|433591800|ref|YP_007281296.1| - 7.3e-34 115.4 0.2 1.5e-33 114.4 0.0 1.6 2 0 0 2 2 1 1 ParA/MinD ATPase like CbiA PF01656.18 gi|433591800|ref|YP_007281296.1| - 3.6e-19 68.9 0.0 5.5e-19 68.3 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain DUF59 PF01883.14 gi|433591800|ref|YP_007281296.1| - 7.9e-14 51.4 0.8 2.2e-13 49.9 0.5 1.8 1 0 0 1 1 1 1 Domain of unknown function DUF59 AAA_31 PF13614.1 gi|433591800|ref|YP_007281296.1| - 7.9e-09 35.6 0.0 1.9e-07 31.1 0.0 2.2 1 1 0 1 1 1 1 AAA domain MipZ PF09140.6 gi|433591800|ref|YP_007281296.1| - 1.3e-08 34.2 0.0 1.9e-08 33.7 0.0 1.2 1 0 0 1 1 1 1 ATPase MipZ Fer4_NifH PF00142.13 gi|433591800|ref|YP_007281296.1| - 3.4e-05 23.1 0.0 0.011 14.9 0.1 2.2 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family VirC1 PF07015.6 gi|433591800|ref|YP_007281296.1| - 0.00012 21.2 0.0 0.00021 20.4 0.0 1.3 1 0 0 1 1 1 1 VirC1 protein ArsA_ATPase PF02374.10 gi|433591800|ref|YP_007281296.1| - 0.00031 19.9 4.6 0.00041 19.4 0.7 2.1 2 0 0 2 2 2 1 Anion-transporting ATPase AAA_25 PF13481.1 gi|433591800|ref|YP_007281296.1| - 0.0015 17.9 0.0 0.0028 17.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|433591800|ref|YP_007281296.1| - 0.074 12.2 0.0 0.12 11.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_17 PF13207.1 gi|433591800|ref|YP_007281296.1| - 0.08 13.7 0.0 0.16 12.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain APS_kinase PF01583.15 gi|433591800|ref|YP_007281296.1| - 0.11 12.1 0.0 0.32 10.6 0.0 1.7 2 0 0 2 2 2 0 Adenylylsulphate kinase AAA_19 PF13245.1 gi|433591800|ref|YP_007281296.1| - 0.57 9.9 4.2 11 5.8 0.2 2.8 2 1 0 2 2 2 0 Part of AAA domain UDG PF03167.14 gi|433591802|ref|YP_007281298.1| - 8.5e-20 70.7 0.0 1.1e-19 70.4 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily DUF539 PF04400.8 gi|433591802|ref|YP_007281298.1| - 0.07 12.6 0.3 0.14 11.6 0.2 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF539) Maff2 PF12750.2 gi|433591803|ref|YP_007281299.1| - 0.19 11.2 4.5 4.5 6.8 0.6 2.1 1 1 1 2 2 2 0 Maff2 family DUF1469 PF07332.6 gi|433591803|ref|YP_007281299.1| - 0.24 11.1 4.3 0.33 10.6 3.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) DUF4231 PF14015.1 gi|433591803|ref|YP_007281299.1| - 0.25 11.3 0.8 0.37 10.7 0.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4231) CorA PF01544.13 gi|433591803|ref|YP_007281299.1| - 1 8.3 3.4 1.2 8.0 2.3 1.0 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein TPPK_C PF12555.3 gi|433591803|ref|YP_007281299.1| - 3.7 7.3 7.8 3.2 7.5 0.3 2.1 2 0 0 2 2 2 0 Thiamine pyrophosphokinase C terminal DUF2064 PF09837.4 gi|433591804|ref|YP_007281300.1| - 0.00011 21.7 0.0 0.00017 21.2 0.0 1.4 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2064) HSDR_N_2 PF13588.1 gi|433591805|ref|YP_007281301.1| - 3.9e-06 26.6 0.0 6.1e-06 26.0 0.0 1.3 1 0 0 1 1 1 1 Type I restriction enzyme R protein N terminus (HSDR_N) DUF1703 PF08011.6 gi|433591805|ref|YP_007281301.1| - 0.019 14.6 0.0 0.036 13.7 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1703) PDDEXK_3 PF13366.1 gi|433591805|ref|YP_007281301.1| - 0.14 12.2 0.0 0.22 11.5 0.0 1.4 1 0 0 1 1 1 0 PD-(D/E)XK nuclease superfamily HpcH_HpaI PF03328.9 gi|433591806|ref|YP_007281302.1| - 1.6e-17 63.1 0.0 1.9e-16 59.6 0.0 2.6 2 1 0 2 2 2 1 HpcH/HpaI aldolase/citrate lyase family Malate_synthase PF01274.17 gi|433591806|ref|YP_007281302.1| - 0.0096 13.9 0.0 0.11 10.4 0.0 2.1 2 0 0 2 2 2 2 Malate synthase MaoC_dehydratas PF01575.14 gi|433591807|ref|YP_007281303.1| - 1.6e-07 30.7 0.0 1e-05 24.9 0.0 2.2 2 0 0 2 2 2 2 MaoC like domain MaoC_dehydrat_N PF13452.1 gi|433591807|ref|YP_007281303.1| - 1.2e-06 28.3 0.1 0.0038 17.0 0.0 2.5 2 0 0 2 2 2 2 N-terminal half of MaoC dehydratase MAAL_C PF07476.6 gi|433591808|ref|YP_007281304.1| - 1.6e-114 381.0 0.0 2.2e-114 380.5 0.0 1.2 1 0 0 1 1 1 1 Methylaspartate ammonia-lyase C-terminus MAAL_N PF05034.8 gi|433591808|ref|YP_007281304.1| - 1.1e-68 230.0 1.9 1.2e-68 229.8 0.4 1.8 2 0 0 2 2 2 1 Methylaspartate ammonia-lyase N-terminus MR_MLE_C PF13378.1 gi|433591808|ref|YP_007281304.1| - 6.3e-09 35.7 0.1 1.6e-08 34.5 0.0 1.7 1 0 0 1 1 1 1 Enolase C-terminal domain-like DUF1839 PF08893.5 gi|433591808|ref|YP_007281304.1| - 0.076 11.9 0.0 0.16 10.9 0.0 1.4 2 0 0 2 2 2 0 Domain of unknown function (DUF1839) Met_asp_mut_E PF06368.6 gi|433591809|ref|YP_007281305.1| - 2.1e-185 616.1 0.0 2.4e-185 615.9 0.0 1.0 1 0 0 1 1 1 1 Methylaspartate mutase E chain (MutE) B12-binding PF02310.14 gi|433591810|ref|YP_007281306.1| - 1.4e-14 53.9 1.5 2.6e-14 53.1 0.9 1.6 1 1 0 1 1 1 1 B12 binding domain Peripla_BP_6 PF13458.1 gi|433591810|ref|YP_007281306.1| - 0.0033 16.8 0.8 0.032 13.5 0.7 1.8 1 1 1 2 2 2 2 Periplasmic binding protein Glyco_transf_28 PF03033.15 gi|433591810|ref|YP_007281306.1| - 0.0051 16.5 0.5 0.068 12.9 0.3 2.0 2 0 0 2 2 2 1 Glycosyltransferase family 28 N-terminal domain ADH_zinc_N PF00107.21 gi|433591810|ref|YP_007281306.1| - 0.0075 15.8 0.2 0.058 12.9 0.0 2.1 1 1 1 2 2 2 1 Zinc-binding dehydrogenase DNAPolymera_Pol PF11590.3 gi|433591810|ref|YP_007281306.1| - 0.11 12.1 0.7 1.4 8.6 0.1 2.4 2 0 0 2 2 2 0 DNA polymerase catalytic subunit Pol CoA_transf_3 PF02515.12 gi|433591811|ref|YP_007281307.1| - 4.8e-59 198.8 0.0 6.4e-59 198.4 0.0 1.2 1 0 0 1 1 1 1 CoA-transferase family III N6_Mtase PF02384.11 gi|433591812|ref|YP_007281308.1| - 9.2e-20 70.9 0.0 6.4e-11 41.8 0.0 2.9 3 1 0 3 3 3 2 N-6 DNA Methylase TaqI_C PF12950.2 gi|433591812|ref|YP_007281308.1| - 1.8e-16 59.9 0.1 3.9e-16 58.8 0.1 1.6 1 0 0 1 1 1 1 TaqI-like C-terminal specificity domain Eco57I PF07669.6 gi|433591812|ref|YP_007281308.1| - 5.1e-15 55.7 0.1 1.3e-14 54.3 0.0 1.7 1 0 0 1 1 1 1 Eco57I restriction-modification methylase Methyltransf_26 PF13659.1 gi|433591812|ref|YP_007281308.1| - 1.5e-12 47.6 0.0 6e-12 45.6 0.0 2.0 1 1 0 1 1 1 1 Methyltransferase domain HSDR_N PF04313.9 gi|433591812|ref|YP_007281308.1| - 0.00039 20.2 0.4 0.0056 16.4 0.0 2.5 2 0 0 2 2 2 1 Type I restriction enzyme R protein N terminus (HSDR_N) MTS PF05175.9 gi|433591812|ref|YP_007281308.1| - 0.059 12.7 0.0 0.18 11.1 0.0 1.7 2 0 0 2 2 2 0 Methyltransferase small domain FdhE PF04216.7 gi|433591814|ref|YP_007281310.1| - 0.0023 17.7 0.8 0.0026 17.5 0.5 1.0 1 0 0 1 1 1 1 Protein involved in formate dehydrogenase formation Zn-ribbon_8 PF09723.5 gi|433591814|ref|YP_007281310.1| - 0.1 12.5 0.1 0.16 11.9 0.1 1.4 1 0 0 1 1 1 0 Zinc ribbon domain zf-dskA_traR PF01258.12 gi|433591814|ref|YP_007281310.1| - 0.16 11.7 1.2 0.33 10.7 0.0 1.9 2 0 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger Nudix_N_2 PF14803.1 gi|433591814|ref|YP_007281310.1| - 0.2 11.3 0.4 0.2 11.3 0.3 1.7 2 0 0 2 2 2 0 Nudix N-terminal Prok-RING_4 PF14447.1 gi|433591814|ref|YP_007281310.1| - 1.1 8.8 3.9 4.4 6.9 0.1 2.1 1 1 1 2 2 2 0 Prokaryotic RING finger family 4 PAS_9 PF13426.1 gi|433591815|ref|YP_007281311.1| - 2.5e-49 165.9 0.1 8.1e-19 67.9 0.0 3.4 3 0 0 3 3 3 3 PAS domain PAS_4 PF08448.5 gi|433591815|ref|YP_007281311.1| - 2.6e-36 124.0 5.8 4.5e-13 49.1 0.1 3.9 3 0 0 3 3 3 3 PAS fold PAS PF00989.19 gi|433591815|ref|YP_007281311.1| - 1.3e-31 108.6 0.0 1.9e-14 53.4 0.0 3.6 3 0 0 3 3 3 3 PAS fold PAS_8 PF13188.1 gi|433591815|ref|YP_007281311.1| - 2.6e-21 74.6 0.0 4.1e-09 35.9 0.0 4.1 3 0 0 3 3 3 2 PAS domain HATPase_c PF02518.21 gi|433591815|ref|YP_007281311.1| - 1.2e-18 66.8 0.0 3e-18 65.5 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Response_reg PF00072.19 gi|433591815|ref|YP_007281311.1| - 1.8e-14 53.6 0.2 3.7e-14 52.6 0.2 1.5 1 0 0 1 1 1 1 Response regulator receiver domain PAS_3 PF08447.6 gi|433591815|ref|YP_007281311.1| - 5.6e-14 51.9 0.0 0.0027 17.7 0.0 3.8 3 0 0 3 3 3 3 PAS fold PAS_7 PF12860.2 gi|433591815|ref|YP_007281311.1| - 1e-09 38.3 0.6 0.00033 20.6 0.0 4.5 3 1 0 3 3 3 2 PAS fold HisKA PF00512.20 gi|433591815|ref|YP_007281311.1| - 6.5e-09 35.6 0.1 6.5e-09 35.6 0.1 2.7 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain HATPase_c_3 PF13589.1 gi|433591815|ref|YP_007281311.1| - 0.005 16.5 0.0 0.012 15.2 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GGDN PF05165.7 gi|433591817|ref|YP_007281313.1| - 1.5e-88 296.0 0.2 1.9e-88 295.6 0.1 1.0 1 0 0 1 1 1 1 GGDN family CBS PF00571.23 gi|433591818|ref|YP_007281314.1| - 4e-25 87.3 7.0 2e-13 49.9 0.4 2.2 2 0 0 2 2 2 2 CBS domain TF_Zn_Ribbon PF08271.7 gi|433591818|ref|YP_007281314.1| - 0.029 13.6 0.7 0.11 11.8 0.5 2.1 1 1 1 2 2 2 0 TFIIB zinc-binding PGK PF00162.14 gi|433591819|ref|YP_007281315.1| - 3.1e-110 368.3 0.0 3.5e-110 368.1 0.0 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase Rhamno_transf PF11316.3 gi|433591819|ref|YP_007281315.1| - 0.18 10.9 0.4 0.35 10.0 0.3 1.4 1 0 0 1 1 1 0 Putative rhamnosyl transferase Acetyltransf_1 PF00583.19 gi|433591820|ref|YP_007281316.1| - 3.1e-21 75.2 0.2 5.3e-21 74.4 0.1 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|433591820|ref|YP_007281316.1| - 6.6e-18 64.9 0.4 8.4e-18 64.5 0.3 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|433591820|ref|YP_007281316.1| - 1.5e-12 47.4 0.0 2.2e-12 46.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|433591820|ref|YP_007281316.1| - 4.2e-11 43.0 0.0 4.9e-11 42.8 0.0 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|433591820|ref|YP_007281316.1| - 1.7e-08 34.7 0.0 2.1e-08 34.4 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|433591820|ref|YP_007281316.1| - 3.7e-08 33.0 0.0 6.1e-08 32.3 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_8 PF13523.1 gi|433591820|ref|YP_007281316.1| - 8.4e-08 32.2 0.0 1e-07 31.9 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|433591820|ref|YP_007281316.1| - 2.4e-07 30.6 0.1 3.8e-07 30.0 0.1 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.1 gi|433591820|ref|YP_007281316.1| - 2.4e-05 24.3 1.2 2.4e-05 24.3 0.8 2.1 1 1 1 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|433591820|ref|YP_007281316.1| - 0.00024 20.9 0.0 0.00046 20.0 0.0 1.5 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase DUF3749 PF12568.3 gi|433591820|ref|YP_007281316.1| - 0.00029 20.4 0.0 0.00047 19.7 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Usp PF00582.21 gi|433591822|ref|YP_007281318.1| - 1.5e-30 106.2 1.7 1.5e-30 106.2 1.2 1.6 2 0 0 2 2 2 1 Universal stress protein family AFOR_C PF01314.13 gi|433591822|ref|YP_007281318.1| - 0.0085 14.8 0.0 0.012 14.3 0.0 1.2 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 PepSY PF03413.14 gi|433591822|ref|YP_007281318.1| - 0.082 13.5 0.6 0.33 11.6 0.4 2.0 1 1 0 1 1 1 0 Peptidase propeptide and YPEB domain AMP-binding PF00501.23 gi|433591823|ref|YP_007281319.1| - 1.9e-103 346.1 0.0 2.2e-103 345.8 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|433591823|ref|YP_007281319.1| - 1.1e-18 67.9 0.5 2.4e-18 66.8 0.3 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain ECH PF00378.15 gi|433591824|ref|YP_007281320.1| - 1e-51 175.4 0.0 1.2e-51 175.2 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family ECH_C PF13766.1 gi|433591824|ref|YP_007281320.1| - 6.2e-05 23.1 0.0 0.00012 22.2 0.0 1.4 1 0 0 1 1 1 1 2-enoyl-CoA Hydratase C-terminal region DUF761 PF05553.6 gi|433591824|ref|YP_007281320.1| - 0.98 8.8 4.2 1.8 7.9 2.9 1.5 1 0 0 1 1 1 0 Cotton fibre expressed protein PAP2 PF01569.16 gi|433591826|ref|YP_007281322.1| - 1.3e-09 37.8 6.5 3.7e-09 36.3 4.4 2.0 1 1 0 1 1 1 1 PAP2 superfamily PAP2_3 PF14378.1 gi|433591826|ref|YP_007281322.1| - 6.8e-05 22.4 6.1 9.3e-05 22.0 4.2 1.2 1 0 0 1 1 1 1 PAP2 superfamily 60KD_IMP PF02096.15 gi|433591826|ref|YP_007281322.1| - 0.089 12.4 0.6 0.13 11.8 0.4 1.3 1 0 0 1 1 1 0 60Kd inner membrane protein DUF308 PF03729.8 gi|433591826|ref|YP_007281322.1| - 7.3 6.6 8.5 0.3 11.0 0.1 2.7 3 1 0 3 3 3 0 Short repeat of unknown function (DUF308) Methyltransf_3 PF01596.12 gi|433591827|ref|YP_007281323.1| - 8.1e-25 87.0 0.0 1e-24 86.7 0.0 1.1 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_24 PF13578.1 gi|433591827|ref|YP_007281323.1| - 1.3e-12 48.5 0.1 2.4e-12 47.5 0.1 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|433591827|ref|YP_007281323.1| - 1.4e-07 32.0 0.2 3.4e-07 30.8 0.1 1.7 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|433591827|ref|YP_007281323.1| - 6.3e-07 29.4 0.1 1.1e-06 28.7 0.1 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|433591827|ref|YP_007281323.1| - 2.2e-06 27.3 0.0 2.7e-06 27.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|433591827|ref|YP_007281323.1| - 0.00018 20.9 0.0 0.00026 20.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_25 PF13649.1 gi|433591827|ref|YP_007281323.1| - 0.00059 20.1 0.0 0.0014 19.0 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain PCMT PF01135.14 gi|433591827|ref|YP_007281323.1| - 0.0011 18.5 0.0 0.002 17.6 0.0 1.4 1 1 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_12 PF08242.7 gi|433591827|ref|YP_007281323.1| - 0.017 15.5 0.0 0.035 14.5 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_23 PF13489.1 gi|433591827|ref|YP_007281323.1| - 0.055 13.1 0.0 0.093 12.4 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain CMAS PF02353.15 gi|433591827|ref|YP_007281323.1| - 0.085 11.9 0.0 0.11 11.5 0.0 1.1 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase DUF938 PF06080.7 gi|433591827|ref|YP_007281323.1| - 0.1 12.1 0.0 0.16 11.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF938) MBOAT_2 PF13813.1 gi|433591828|ref|YP_007281324.1| - 0.1 12.6 0.5 1.4 9.0 0.1 2.1 1 1 1 2 2 2 0 Membrane bound O-acyl transferase family SNARE_assoc PF09335.6 gi|433591828|ref|YP_007281324.1| - 3 8.0 13.0 12 6.1 9.0 2.1 1 1 0 1 1 1 0 SNARE associated Golgi protein DUF1761 PF08570.5 gi|433591828|ref|YP_007281324.1| - 4.1 7.4 10.6 7.9 6.5 6.5 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF1761) PAS_9 PF13426.1 gi|433591829|ref|YP_007281325.1| - 6.4e-57 190.3 0.1 2.5e-13 50.2 0.0 7.5 7 1 0 7 7 7 6 PAS domain PAS PF00989.19 gi|433591829|ref|YP_007281325.1| - 7.1e-53 177.1 3.5 6.8e-15 54.8 0.1 7.1 7 0 0 7 7 7 6 PAS fold PAS_4 PF08448.5 gi|433591829|ref|YP_007281325.1| - 1.1e-49 167.0 29.6 7.3e-13 48.5 0.1 7.1 7 0 0 7 7 7 6 PAS fold PAS_8 PF13188.1 gi|433591829|ref|YP_007281325.1| - 8.4e-33 111.1 5.2 9.6e-08 31.6 0.0 7.2 6 0 0 6 6 6 5 PAS domain HATPase_c PF02518.21 gi|433591829|ref|YP_007281325.1| - 1.3e-29 102.1 0.0 3e-29 100.9 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_7 PF12860.2 gi|433591829|ref|YP_007281325.1| - 1.6e-17 63.5 1.8 0.00058 19.8 0.0 7.2 6 2 0 6 6 6 3 PAS fold HisKA PF00512.20 gi|433591829|ref|YP_007281325.1| - 3.7e-11 42.8 0.1 3.7e-11 42.8 0.1 3.0 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain PAS_3 PF08447.6 gi|433591829|ref|YP_007281325.1| - 1.4e-10 41.1 1.6 0.0025 17.8 0.0 6.7 6 2 0 6 6 6 1 PAS fold GAF_3 PF13492.1 gi|433591829|ref|YP_007281325.1| - 1.5e-10 41.2 0.4 7.3e-09 35.8 0.0 3.3 3 0 0 3 3 3 1 GAF domain GAF_2 PF13185.1 gi|433591829|ref|YP_007281325.1| - 8.1e-09 36.1 0.5 8.1e-09 36.1 0.3 3.5 4 1 0 4 4 4 1 GAF domain PAS_10 PF13596.1 gi|433591829|ref|YP_007281325.1| - 6e-06 26.4 0.0 0.25 11.6 0.0 4.5 6 0 0 6 6 6 2 PAS domain HATPase_c_5 PF14501.1 gi|433591829|ref|YP_007281325.1| - 7.8e-05 22.3 0.0 0.00014 21.5 0.0 1.4 1 0 0 1 1 1 1 GHKL domain HATPase_c_2 PF13581.1 gi|433591829|ref|YP_007281325.1| - 0.0001 22.1 0.1 0.00047 19.9 0.1 2.2 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain GAF PF01590.21 gi|433591829|ref|YP_007281325.1| - 0.00065 19.8 0.7 0.013 15.6 0.0 3.3 2 0 0 2 2 2 1 GAF domain DUF1467 PF07330.7 gi|433591830|ref|YP_007281326.1| - 0.0053 16.5 0.6 0.012 15.3 0.1 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF1467) TM_helix PF05552.7 gi|433591832|ref|YP_007281328.1| - 2.3e-16 59.1 5.0 4e-11 42.3 0.6 2.6 2 0 0 2 2 2 2 Conserved TM helix DUF962 PF06127.6 gi|433591832|ref|YP_007281328.1| - 0.56 10.1 2.6 1.7 8.5 1.8 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF962) DsbD PF02683.10 gi|433591832|ref|YP_007281328.1| - 2.7 7.5 8.7 5.4 6.5 4.8 2.2 1 1 0 1 1 1 0 Cytochrome C biogenesis protein transmembrane region Creatininase PF02633.9 gi|433591833|ref|YP_007281329.1| - 1.8e-66 223.6 0.9 2e-66 223.4 0.6 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase NikR_C PF08753.6 gi|433591834|ref|YP_007281330.1| - 5.7e-20 70.9 1.3 7.8e-20 70.5 0.9 1.2 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_1 PF01402.16 gi|433591834|ref|YP_007281330.1| - 1.9e-06 27.5 0.0 3e-06 26.8 0.0 1.4 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_3 PF12651.2 gi|433591834|ref|YP_007281330.1| - 0.14 11.8 0.0 0.31 10.7 0.0 1.6 1 1 0 1 1 1 0 Ribbon-helix-helix domain Cupin_2 PF07883.6 gi|433591835|ref|YP_007281331.1| - 2.8e-10 39.5 0.1 4e-10 39.0 0.1 1.2 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.14 gi|433591835|ref|YP_007281331.1| - 3.1e-05 23.6 0.0 3.9e-05 23.3 0.0 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_6 PF12852.2 gi|433591835|ref|YP_007281331.1| - 0.00032 20.3 0.1 0.00047 19.8 0.1 1.3 1 1 0 1 1 1 1 Cupin Cupin_3 PF05899.7 gi|433591835|ref|YP_007281331.1| - 0.00057 19.2 0.0 0.00095 18.5 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF861) MannoseP_isomer PF01050.13 gi|433591835|ref|YP_007281331.1| - 0.044 13.3 0.0 0.052 13.1 0.0 1.2 1 0 0 1 1 1 0 Mannose-6-phosphate isomerase AraC_binding_2 PF14525.1 gi|433591835|ref|YP_007281331.1| - 0.068 12.7 0.0 0.081 12.4 0.0 1.1 1 0 0 1 1 1 0 AraC-binding-like domain KduI PF04962.7 gi|433591835|ref|YP_007281331.1| - 0.1 11.6 0.0 0.14 11.1 0.0 1.2 1 0 0 1 1 1 0 KduI/IolB family Pirin_C PF05726.8 gi|433591835|ref|YP_007281331.1| - 0.11 12.5 0.0 0.15 12.1 0.0 1.2 1 0 0 1 1 1 0 Pirin C-terminal cupin domain EutQ PF06249.7 gi|433591835|ref|YP_007281331.1| - 0.12 11.9 0.0 0.14 11.6 0.0 1.2 1 0 0 1 1 1 0 Ethanolamine utilisation protein EutQ DUF1656 PF07869.7 gi|433591836|ref|YP_007281332.1| - 0.071 12.9 1.1 0.093 12.5 0.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1656) Acyl-CoA_dh_1 PF00441.19 gi|433591837|ref|YP_007281333.1| - 1.7e-41 141.8 3.0 1.7e-41 141.8 2.1 2.0 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|433591837|ref|YP_007281333.1| - 4e-24 85.3 2.0 4e-24 85.3 1.4 1.8 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.14 gi|433591837|ref|YP_007281333.1| - 4.2e-21 74.1 0.2 4.2e-21 74.1 0.1 2.3 3 0 0 3 3 3 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.6 gi|433591837|ref|YP_007281333.1| - 3e-14 53.4 5.4 6.6e-14 52.3 3.7 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Response_reg PF00072.19 gi|433591838|ref|YP_007281334.1| - 4e-20 71.8 0.4 4.8e-20 71.6 0.2 1.1 1 0 0 1 1 1 1 Response regulator receiver domain 3HCDH_N PF02737.13 gi|433591839|ref|YP_007281335.1| - 1.3e-63 213.9 0.2 2e-63 213.3 0.1 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ECH PF00378.15 gi|433591839|ref|YP_007281335.1| - 2.5e-60 203.6 0.0 5.3e-60 202.5 0.0 1.5 2 0 0 2 2 2 1 Enoyl-CoA hydratase/isomerase family 3HCDH PF00725.17 gi|433591839|ref|YP_007281335.1| - 5.5e-49 164.5 0.9 3.6e-30 104.2 0.0 3.4 3 0 0 3 3 3 2 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NAD_Gly3P_dh_N PF01210.18 gi|433591839|ref|YP_007281335.1| - 5.5e-09 35.9 0.0 9.5e-09 35.1 0.0 1.4 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_2 PF03446.10 gi|433591839|ref|YP_007281335.1| - 6.9e-06 26.0 0.6 3.3e-05 23.7 0.4 2.0 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.12 gi|433591839|ref|YP_007281335.1| - 0.00047 20.5 1.4 0.004 17.5 0.9 2.4 1 1 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent ECH_C PF13766.1 gi|433591839|ref|YP_007281335.1| - 0.047 13.8 0.1 0.22 11.6 0.0 2.1 2 0 0 2 2 2 0 2-enoyl-CoA Hydratase C-terminal region 2-Hacid_dh_C PF02826.14 gi|433591839|ref|YP_007281335.1| - 0.12 11.4 1.3 1.3 8.1 0.1 2.3 1 1 1 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Acyl-CoA_dh_1 PF00441.19 gi|433591840|ref|YP_007281336.1| - 1.9e-52 177.3 2.6 2.9e-52 176.7 1.8 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|433591840|ref|YP_007281336.1| - 2.1e-34 118.4 0.3 2.1e-34 118.4 0.2 2.0 2 1 0 2 2 2 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.6 gi|433591840|ref|YP_007281336.1| - 3.6e-28 98.4 2.8 5.3e-28 97.9 1.9 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.14 gi|433591840|ref|YP_007281336.1| - 1.5e-21 75.6 0.1 3.5e-21 74.4 0.1 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain HpaB PF03241.8 gi|433591840|ref|YP_007281336.1| - 0.0095 14.7 0.1 0.015 14.1 0.1 1.3 1 0 0 1 1 1 1 4-hydroxyphenylacetate 3-hydroxylase C terminal HTH_10 PF04967.7 gi|433591841|ref|YP_007281337.1| - 3.3e-15 55.4 0.1 6.1e-15 54.5 0.0 1.5 1 0 0 1 1 1 1 HTH DNA binding domain MarR_2 PF12802.2 gi|433591841|ref|YP_007281337.1| - 2.5e-05 23.8 0.0 8e-05 22.2 0.0 1.9 1 0 0 1 1 1 1 MarR family HTH_30 PF13556.1 gi|433591841|ref|YP_007281337.1| - 0.00035 20.1 0.0 0.001 18.6 0.0 1.8 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain HTH_8 PF02954.14 gi|433591841|ref|YP_007281337.1| - 0.011 15.2 0.1 0.042 13.3 0.0 2.0 2 0 0 2 2 2 0 Bacterial regulatory protein, Fis family HTH_20 PF12840.2 gi|433591841|ref|YP_007281337.1| - 0.016 15.0 0.0 0.051 13.3 0.0 2.0 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_psq PF05225.11 gi|433591841|ref|YP_007281337.1| - 0.037 13.5 0.0 0.037 13.5 0.0 1.9 3 0 0 3 3 3 0 helix-turn-helix, Psq domain HTH_24 PF13412.1 gi|433591841|ref|YP_007281337.1| - 0.13 11.7 0.0 0.22 10.9 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|433591841|ref|YP_007281337.1| - 0.14 11.8 0.0 0.25 11.0 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family DUF1150 PF06620.6 gi|433591841|ref|YP_007281337.1| - 0.53 10.1 3.5 10 6.0 0.1 3.0 4 0 0 4 4 4 0 Protein of unknown function (DUF1150) E1-E2_ATPase PF00122.15 gi|433591842|ref|YP_007281338.1| - 6e-59 198.8 0.2 6e-59 198.8 0.1 1.8 2 0 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.21 gi|433591842|ref|YP_007281338.1| - 2.4e-45 155.5 6.6 2.4e-45 155.5 4.6 2.0 3 0 0 3 3 3 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|433591842|ref|YP_007281338.1| - 7e-15 55.6 0.0 2.2e-14 54.0 0.0 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.21 gi|433591842|ref|YP_007281338.1| - 7.7e-13 48.3 0.1 5.3e-12 45.7 0.0 2.4 2 0 0 2 2 2 1 Heavy-metal-associated domain Hydrolase_3 PF08282.7 gi|433591842|ref|YP_007281338.1| - 0.0057 16.2 1.2 0.028 14.0 0.7 1.9 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase FAD_binding_2 PF00890.19 gi|433591843|ref|YP_007281339.1| - 4.2e-93 312.4 6.5 4.2e-93 312.4 4.5 1.4 2 0 0 2 2 2 1 FAD binding domain Succ_DH_flav_C PF02910.15 gi|433591843|ref|YP_007281339.1| - 8.8e-25 87.0 0.0 2.2e-24 85.7 0.0 1.7 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term DAO PF01266.19 gi|433591843|ref|YP_007281339.1| - 2.2e-12 46.5 4.7 7.9e-12 44.7 3.3 2.0 1 1 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|433591843|ref|YP_007281339.1| - 3.9e-06 26.8 0.0 0.00027 20.8 0.0 2.6 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|433591843|ref|YP_007281339.1| - 1.1e-05 24.6 0.5 3.7e-05 22.9 0.3 1.8 1 1 0 1 1 1 1 FAD binding domain HI0933_like PF03486.9 gi|433591843|ref|YP_007281339.1| - 2.1e-05 23.1 2.1 0.23 9.8 0.5 3.1 3 0 0 3 3 3 2 HI0933-like protein Pyr_redox_3 PF13738.1 gi|433591843|ref|YP_007281339.1| - 0.00052 20.1 1.2 0.0055 16.7 0.8 2.2 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Shikimate_DH PF01488.15 gi|433591843|ref|YP_007281339.1| - 0.0059 16.6 0.1 0.013 15.5 0.0 1.5 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase ApbA PF02558.11 gi|433591843|ref|YP_007281339.1| - 0.012 15.0 1.2 0.025 14.0 0.4 1.8 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA GIDA PF01134.17 gi|433591843|ref|YP_007281339.1| - 0.016 14.0 0.5 0.072 11.9 0.5 1.7 2 0 0 2 2 2 0 Glucose inhibited division protein A Thi4 PF01946.12 gi|433591843|ref|YP_007281339.1| - 0.034 13.2 1.9 4.2 6.3 0.1 2.5 2 0 0 2 2 2 0 Thi4 family ThiF PF00899.16 gi|433591843|ref|YP_007281339.1| - 0.036 13.8 0.2 0.089 12.6 0.1 1.6 1 0 0 1 1 1 0 ThiF family NAD_binding_8 PF13450.1 gi|433591843|ref|YP_007281339.1| - 0.056 13.4 2.2 0.13 12.2 0.7 2.3 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain Lycopene_cycl PF05834.7 gi|433591843|ref|YP_007281339.1| - 0.09 11.6 0.4 0.13 11.0 0.2 1.2 1 0 0 1 1 1 0 Lycopene cyclase protein NAD_binding_7 PF13241.1 gi|433591843|ref|YP_007281339.1| - 0.12 12.6 0.0 0.32 11.2 0.0 1.7 1 0 0 1 1 1 0 Putative NAD(P)-binding HhH-GPD PF00730.20 gi|433591844|ref|YP_007281340.1| - 4.9e-16 58.9 0.0 6.4e-16 58.5 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein zf-HC2 PF13490.1 gi|433591844|ref|YP_007281340.1| - 0.056 13.3 1.3 8.8 6.3 0.2 2.5 2 0 0 2 2 2 0 Putative zinc-finger peroxidase PF00141.18 gi|433591846|ref|YP_007281342.1| - 2.7e-88 295.3 0.0 2.8e-50 170.9 0.0 2.2 2 0 0 2 2 2 2 Peroxidase RimK PF08443.6 gi|433591847|ref|YP_007281343.1| - 5.6e-28 97.7 0.0 8.5e-28 97.1 0.0 1.3 1 0 0 1 1 1 1 RimK-like ATP-grasp domain Zn_protease PF05618.6 gi|433591847|ref|YP_007281343.1| - 3.3e-10 39.7 0.8 6.6e-08 32.3 0.1 2.3 1 1 0 2 2 2 2 Putative ATP-dependant zinc protease GSH-S_ATP PF02955.11 gi|433591847|ref|YP_007281343.1| - 1.5e-08 33.9 0.0 2.8e-08 33.0 0.0 1.3 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_3 PF02655.9 gi|433591847|ref|YP_007281343.1| - 6.5e-08 32.6 0.0 2e-07 31.0 0.0 1.8 2 0 0 2 2 2 1 ATP-grasp domain ATP-grasp_4 PF13535.1 gi|433591847|ref|YP_007281343.1| - 1.3e-06 28.3 0.0 2.4e-06 27.4 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain DUF4343 PF14243.1 gi|433591847|ref|YP_007281343.1| - 0.0012 18.6 0.1 0.0028 17.5 0.1 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4343) Asp_protease_2 PF13650.1 gi|433591847|ref|YP_007281343.1| - 0.0033 17.8 2.5 0.0062 17.0 0.7 2.3 3 0 0 3 3 3 1 Aspartyl protease RVP PF00077.15 gi|433591847|ref|YP_007281343.1| - 0.023 14.6 0.1 0.042 13.7 0.1 1.5 1 0 0 1 1 1 0 Retroviral aspartyl protease Polysacc_synt PF01943.12 gi|433591848|ref|YP_007281344.1| - 1.8e-28 99.5 13.7 1.8e-28 99.5 9.5 2.2 3 1 0 3 3 3 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.1 gi|433591848|ref|YP_007281344.1| - 8.5e-22 77.5 20.3 8.5e-22 77.5 14.1 3.8 2 1 2 4 4 4 2 Polysaccharide biosynthesis C-terminal domain Polysacc_synt_3 PF13440.1 gi|433591848|ref|YP_007281344.1| - 2.1e-09 37.1 21.8 2.1e-09 37.1 15.1 3.0 2 1 1 3 3 3 1 Polysaccharide biosynthesis protein MatE PF01554.13 gi|433591848|ref|YP_007281344.1| - 2.9e-08 33.4 2.1 2.9e-08 33.4 1.5 3.3 2 2 0 3 3 3 2 MatE DUF2101 PF09874.4 gi|433591848|ref|YP_007281344.1| - 1.6 8.1 6.1 2.3 7.6 0.4 2.5 2 0 0 2 2 2 0 Predicted membrane protein (DUF2101) Acetyltransf_1 PF00583.19 gi|433591849|ref|YP_007281345.1| - 1.8e-12 47.1 0.1 3.2e-12 46.2 0.1 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|433591849|ref|YP_007281345.1| - 9.1e-11 41.9 0.0 1.4e-10 41.3 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|433591849|ref|YP_007281345.1| - 8.7e-09 35.4 0.0 1.7e-08 34.4 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|433591849|ref|YP_007281345.1| - 1.1e-06 28.5 0.0 2e-06 27.6 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|433591849|ref|YP_007281345.1| - 3.4e-06 27.0 0.0 8.7e-06 25.7 0.0 1.6 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|433591849|ref|YP_007281345.1| - 2.3e-05 24.5 0.0 4.5e-05 23.6 0.0 1.5 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|433591849|ref|YP_007281345.1| - 0.00018 21.1 0.0 0.00034 20.3 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein PmbA_TldD PF01523.11 gi|433591849|ref|YP_007281345.1| - 0.0075 15.5 0.0 0.01 15.1 0.0 1.2 1 0 0 1 1 1 1 Putative modulator of DNA gyrase Acetyltransf_6 PF13480.1 gi|433591849|ref|YP_007281345.1| - 0.027 14.4 2.9 0.29 11.0 0.4 2.1 1 1 1 2 2 2 0 Acetyltransferase (GNAT) domain DNA_RNApol_7kD PF03604.8 gi|433591849|ref|YP_007281345.1| - 0.16 11.4 1.8 0.31 10.5 1.3 1.5 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit AstE_AspA PF04952.9 gi|433591850|ref|YP_007281346.1| - 2.1e-65 220.4 0.0 2.7e-65 220.1 0.0 1.0 1 0 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family DUF354 PF04007.7 gi|433591850|ref|YP_007281346.1| - 0.21 10.4 0.0 0.31 9.8 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF354) Sdh_cyt PF01127.17 gi|433591851|ref|YP_007281347.1| - 1.3e-20 73.4 3.0 1.5e-20 73.2 2.1 1.1 1 0 0 1 1 1 1 Succinate dehydrogenase/Fumarate reductase transmembrane subunit Ferric_reduct PF01794.14 gi|433591851|ref|YP_007281347.1| - 0.011 15.8 3.2 0.018 15.1 2.2 1.5 1 1 0 1 1 1 0 Ferric reductase like transmembrane component DUF1206 PF06724.6 gi|433591851|ref|YP_007281347.1| - 0.11 12.3 1.6 0.27 11.0 1.1 1.7 1 1 0 1 1 1 0 Domain of Unknown Function (DUF1206) Sdh_cyt PF01127.17 gi|433591852|ref|YP_007281348.1| - 3.5e-11 42.9 5.9 4.5e-11 42.6 4.1 1.2 1 0 0 1 1 1 1 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DUF2930 PF11152.3 gi|433591852|ref|YP_007281348.1| - 0.038 13.1 0.2 0.045 12.9 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2930) ERK-JNK_inhib PF15002.1 gi|433591852|ref|YP_007281348.1| - 0.14 11.4 0.0 0.19 11.0 0.0 1.1 1 0 0 1 1 1 0 ERK and JNK pathways, inhibitor 2TM PF13239.1 gi|433591852|ref|YP_007281348.1| - 0.21 11.6 6.5 1.4 9.0 0.9 2.4 1 1 1 2 2 2 0 2TM domain DUF485 PF04341.7 gi|433591852|ref|YP_007281348.1| - 0.54 10.0 6.3 0.52 10.0 3.8 1.5 1 1 0 1 1 1 0 Protein of unknown function, DUF485 Fer2_3 PF13085.1 gi|433591853|ref|YP_007281349.1| - 7.2e-33 112.6 0.1 7.8e-32 109.3 0.0 2.1 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer4_8 PF13183.1 gi|433591853|ref|YP_007281349.1| - 1.8e-11 43.8 3.5 3.9e-11 42.8 2.4 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|433591853|ref|YP_007281349.1| - 4.8e-06 26.8 5.0 0.019 15.4 0.1 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|433591853|ref|YP_007281349.1| - 7.6e-06 26.1 4.6 1.6e-05 25.1 3.0 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|433591853|ref|YP_007281349.1| - 8.1e-06 26.0 1.4 8.1e-06 26.0 1.0 2.4 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|433591853|ref|YP_007281349.1| - 1.2e-05 25.6 1.2 1.2e-05 25.6 0.9 2.3 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|433591853|ref|YP_007281349.1| - 0.00056 19.6 9.0 0.0033 17.2 6.2 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|433591853|ref|YP_007281349.1| - 0.0054 16.5 1.1 0.0054 16.5 0.7 2.8 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_20 PF14691.1 gi|433591853|ref|YP_007281349.1| - 0.019 14.6 6.4 0.54 9.9 0.3 2.5 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_6 PF12837.2 gi|433591853|ref|YP_007281349.1| - 0.26 11.2 9.6 0.28 11.1 1.6 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_16 PF13484.1 gi|433591853|ref|YP_007281349.1| - 0.5 11.1 9.6 2.9 8.7 1.8 2.6 1 1 2 3 3 3 0 4Fe-4S double cluster binding domain Fer4 PF00037.22 gi|433591853|ref|YP_007281349.1| - 0.84 9.3 9.5 2.7 7.7 2.0 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_15 PF13459.1 gi|433591853|ref|YP_007281349.1| - 1.2 9.7 6.7 8.9 6.9 0.1 3.3 4 0 0 4 4 2 0 4Fe-4S single cluster domain Fer4_4 PF12800.2 gi|433591853|ref|YP_007281349.1| - 7.8 7.1 13.4 0.98 9.9 1.1 2.8 3 0 0 3 3 2 0 4Fe-4S binding domain FAD_binding_2 PF00890.19 gi|433591854|ref|YP_007281350.1| - 2.1e-121 405.6 9.2 2.1e-121 405.6 6.4 1.5 2 0 0 2 2 2 1 FAD binding domain Succ_DH_flav_C PF02910.15 gi|433591854|ref|YP_007281350.1| - 2.9e-40 137.0 0.2 4.7e-40 136.4 0.1 1.4 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term Pyr_redox_2 PF07992.9 gi|433591854|ref|YP_007281350.1| - 4.1e-08 33.3 16.0 6.3e-06 26.2 10.7 3.3 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|433591854|ref|YP_007281350.1| - 5.9e-07 28.7 4.9 4.6e-05 22.4 3.4 2.4 1 1 0 1 1 1 1 FAD dependent oxidoreductase GIDA PF01134.17 gi|433591854|ref|YP_007281350.1| - 0.00034 19.6 4.9 0.00075 18.4 3.4 1.6 1 0 0 1 1 1 1 Glucose inhibited division protein A HI0933_like PF03486.9 gi|433591854|ref|YP_007281350.1| - 0.00038 19.0 1.1 0.00038 19.0 0.7 2.0 2 0 0 2 2 2 1 HI0933-like protein Thi4 PF01946.12 gi|433591854|ref|YP_007281350.1| - 0.0015 17.6 2.5 0.019 14.0 0.4 2.8 3 0 0 3 3 3 1 Thi4 family FAD_binding_3 PF01494.14 gi|433591854|ref|YP_007281350.1| - 0.0023 17.0 1.3 0.0044 16.1 0.9 1.4 1 0 0 1 1 1 1 FAD binding domain AlaDh_PNT_C PF01262.16 gi|433591854|ref|YP_007281350.1| - 0.012 15.1 0.1 0.023 14.2 0.1 1.4 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain FAD_oxidored PF12831.2 gi|433591854|ref|YP_007281350.1| - 0.043 12.8 11.2 0.13 11.3 7.8 2.0 1 1 0 1 1 1 0 FAD dependent oxidoreductase Pyr_redox PF00070.22 gi|433591854|ref|YP_007281350.1| - 0.057 13.8 1.1 0.17 12.3 0.7 1.8 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Ku_PK_bind PF08785.6 gi|433591854|ref|YP_007281350.1| - 0.067 13.0 0.1 0.11 12.3 0.1 1.3 1 0 0 1 1 1 0 Ku C terminal domain like Pyr_redox_3 PF13738.1 gi|433591854|ref|YP_007281350.1| - 1.7 8.6 5.6 1.3 8.9 1.2 2.3 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase DUF92 PF01940.11 gi|433591855|ref|YP_007281351.1| - 0.36 9.9 2.7 0.38 9.8 1.9 1.1 1 0 0 1 1 1 0 Integral membrane protein DUF92 PsbM PF05151.7 gi|433591855|ref|YP_007281351.1| - 4.2 7.0 9.1 0.76 9.4 2.4 2.3 2 1 0 2 2 2 0 Photosystem II reaction centre M protein (PsbM) DUF1427 PF07235.6 gi|433591856|ref|YP_007281352.1| - 0.00011 22.1 4.0 0.00013 22.0 2.8 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1427) MarR_2 PF12802.2 gi|433591857|ref|YP_007281353.1| - 3.5e-05 23.3 0.1 4.3e-05 23.1 0.1 1.2 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|433591857|ref|YP_007281353.1| - 6e-05 22.6 0.0 7.6e-05 22.3 0.0 1.1 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|433591857|ref|YP_007281353.1| - 0.0003 20.3 0.1 0.0004 19.9 0.0 1.2 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_36 PF13730.1 gi|433591857|ref|YP_007281353.1| - 0.00075 19.5 0.0 0.001 19.1 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_34 PF13601.1 gi|433591857|ref|YP_007281353.1| - 0.0058 16.6 0.0 0.0074 16.2 0.0 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain Rrf2 PF02082.15 gi|433591857|ref|YP_007281353.1| - 0.019 15.0 0.0 0.02 15.0 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator HTH_27 PF13463.1 gi|433591857|ref|YP_007281353.1| - 0.023 15.0 0.1 0.031 14.5 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_24 PF13412.1 gi|433591857|ref|YP_007281353.1| - 0.094 12.1 0.0 0.12 11.8 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding MarR PF01047.17 gi|433591857|ref|YP_007281353.1| - 0.12 12.0 0.1 0.21 11.3 0.0 1.4 2 0 0 2 2 2 0 MarR family HD PF01966.17 gi|433591858|ref|YP_007281354.1| - 4.5e-09 36.3 3.0 9.3e-09 35.3 2.1 1.6 1 0 0 1 1 1 1 HD domain AhpC-TSA PF00578.16 gi|433591859|ref|YP_007281355.1| - 5.1e-32 110.1 0.0 5.9e-32 109.9 0.0 1.0 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|433591859|ref|YP_007281355.1| - 3.4e-22 78.5 0.0 3.9e-22 78.3 0.0 1.0 1 0 0 1 1 1 1 Redoxin DUF899 PF05988.7 gi|433591859|ref|YP_007281355.1| - 0.00013 21.4 0.0 0.00017 21.0 0.0 1.1 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF899) Varsurf_PPLC PF03490.8 gi|433591859|ref|YP_007281355.1| - 0.0024 17.5 1.0 0.036 13.7 0.0 2.5 3 0 0 3 3 3 1 Variant-surface-glycoprotein phospholipase C MttA_Hcf106 PF02416.11 gi|433591860|ref|YP_007281356.1| - 2e-14 52.3 2.3 2.3e-14 52.2 1.6 1.3 1 1 0 1 1 1 1 mttA/Hcf106 family Acyl-CoA_dh_1 PF00441.19 gi|433591861|ref|YP_007281357.1| - 6.1e-36 123.7 0.4 1e-35 123.0 0.3 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.14 gi|433591861|ref|YP_007281357.1| - 1.8e-17 62.5 0.1 3.6e-17 61.6 0.1 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_N PF02771.11 gi|433591861|ref|YP_007281357.1| - 3.1e-12 47.0 0.4 7.3e-12 45.8 0.3 1.7 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.6 gi|433591861|ref|YP_007281357.1| - 7.5e-12 45.6 0.2 2.2e-11 44.1 0.1 1.8 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain HpaB_N PF11794.3 gi|433591861|ref|YP_007281357.1| - 0.0054 16.1 0.0 0.014 14.8 0.0 1.6 2 0 0 2 2 2 1 4-hydroxyphenylacetate 3-hydroxylase N terminal adh_short PF00106.20 gi|433591862|ref|YP_007281358.1| - 9.7e-34 116.6 4.5 1.3e-33 116.2 3.1 1.2 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|433591862|ref|YP_007281358.1| - 1.7e-32 113.1 0.0 2e-32 112.9 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|433591862|ref|YP_007281358.1| - 3.9e-15 55.9 1.4 5.9e-15 55.3 0.9 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|433591862|ref|YP_007281358.1| - 6.5e-05 22.4 0.4 9.8e-05 21.8 0.3 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family THF_DHG_CYH_C PF02882.14 gi|433591862|ref|YP_007281358.1| - 0.004 16.2 0.3 0.0072 15.4 0.2 1.4 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain 3Beta_HSD PF01073.14 gi|433591862|ref|YP_007281358.1| - 0.0066 15.1 0.2 0.0092 14.7 0.2 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_10 PF13460.1 gi|433591862|ref|YP_007281358.1| - 0.01 15.8 8.5 0.052 13.5 5.9 2.0 1 1 0 1 1 1 1 NADH(P)-binding ApbA PF02558.11 gi|433591862|ref|YP_007281358.1| - 0.048 13.1 0.1 0.074 12.4 0.0 1.3 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA DHOase PF12890.2 gi|433591862|ref|YP_007281358.1| - 0.058 13.0 0.0 0.13 11.9 0.0 1.5 2 0 0 2 2 2 0 Dihydro-orotase-like T2SE PF00437.15 gi|433591863|ref|YP_007281359.1| - 1.5e-44 151.9 0.0 2.4e-44 151.2 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.1 gi|433591863|ref|YP_007281359.1| - 0.00018 21.0 0.1 0.00036 20.0 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain T2SF PF00482.18 gi|433591864|ref|YP_007281360.1| - 9.5e-28 96.5 6.2 1.6e-14 53.8 0.5 3.2 2 0 0 2 2 2 2 Type II secretion system (T2SS), protein F DUF912 PF06024.7 gi|433591864|ref|YP_007281360.1| - 0.17 11.9 0.4 1.9 8.5 0.1 2.6 2 0 0 2 2 2 0 Nucleopolyhedrovirus protein of unknown function (DUF912) Fib_alpha PF08702.5 gi|433591864|ref|YP_007281360.1| - 0.28 11.2 0.8 0.56 10.3 0.1 1.7 2 0 0 2 2 2 0 Fibrinogen alpha/beta chain family Nramp PF01566.13 gi|433591866|ref|YP_007281362.1| - 0.0099 14.7 0.0 0.014 14.2 0.0 1.1 1 0 0 1 1 1 1 Natural resistance-associated macrophage protein DUF2611 PF11022.3 gi|433591866|ref|YP_007281362.1| - 0.11 12.6 0.1 0.21 11.6 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2611) MacB_PCD PF12704.2 gi|433591867|ref|YP_007281363.1| - 0.017 14.7 1.4 0.062 12.8 1.0 1.8 1 1 0 1 1 1 0 MacB-like periplasmic core domain DUF515 PF04415.7 gi|433591867|ref|YP_007281363.1| - 0.14 10.3 0.2 0.98 7.5 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF515) DUF1628 PF07790.6 gi|433591868|ref|YP_007281364.1| - 0.083 13.6 0.3 0.35 11.6 0.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1628) YfaZ PF07437.6 gi|433591869|ref|YP_007281365.1| - 0.065 12.6 0.3 3.6 6.9 0.0 2.3 1 1 1 2 2 2 0 YfaZ precursor CheR PF01739.13 gi|433591871|ref|YP_007281367.1| - 3.7e-48 163.4 0.0 4.9e-48 163.0 0.0 1.2 1 0 0 1 1 1 1 CheR methyltransferase, SAM binding domain CheR_N PF03705.10 gi|433591871|ref|YP_007281367.1| - 4.9e-10 38.6 0.7 2.2e-09 36.5 0.1 2.4 2 0 0 2 2 2 1 CheR methyltransferase, all-alpha domain Methyltransf_12 PF08242.7 gi|433591871|ref|YP_007281367.1| - 2.5e-08 34.3 0.0 5.5e-06 26.7 0.0 2.5 1 1 1 2 2 2 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|433591871|ref|YP_007281367.1| - 8.4e-07 29.5 0.0 1.9e-06 28.4 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|433591871|ref|YP_007281367.1| - 5.3e-06 26.0 0.0 0.0041 16.7 0.0 2.2 2 0 0 2 2 2 2 Methyltransferase domain Methyltransf_11 PF08241.7 gi|433591871|ref|YP_007281367.1| - 1.7e-05 25.2 0.0 0.00035 20.9 0.0 2.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|433591871|ref|YP_007281367.1| - 2.2e-05 24.7 0.0 7.2e-05 23.0 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|433591871|ref|YP_007281367.1| - 0.0018 18.0 0.0 0.0026 17.4 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain NodS PF05401.6 gi|433591871|ref|YP_007281367.1| - 0.0066 15.8 0.0 0.01 15.2 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) CheD PF03975.8 gi|433591872|ref|YP_007281368.1| - 3.1e-32 110.7 0.0 4e-32 110.3 0.0 1.1 1 0 0 1 1 1 1 CheD chemotactic sensory transduction CheC PF04509.7 gi|433591873|ref|YP_007281369.1| - 8.6e-19 66.9 0.8 9.7e-13 47.6 0.0 2.4 2 0 0 2 2 2 2 CheC-like family CheX PF13690.1 gi|433591873|ref|YP_007281369.1| - 1.2e-13 50.7 0.5 4.2e-07 29.7 0.0 2.8 2 1 0 2 2 2 2 Chemotaxis phosphatase CheX CheC PF04509.7 gi|433591874|ref|YP_007281370.1| - 4.3e-12 45.5 0.1 1.4e-11 43.9 0.0 1.9 2 0 0 2 2 2 1 CheC-like family CheX PF13690.1 gi|433591874|ref|YP_007281370.1| - 8.9e-06 25.4 0.0 1.8e-05 24.5 0.0 1.5 1 0 0 1 1 1 1 Chemotaxis phosphatase CheX Hen1_L PF12623.2 gi|433591874|ref|YP_007281370.1| - 0.094 11.4 0.0 0.14 10.8 0.0 1.2 1 0 0 1 1 1 0 RNA repair, ligase-Pnkp-associating, region of Hen1 Hpt PF01627.18 gi|433591875|ref|YP_007281371.1| - 7.3e-24 83.6 7.4 1.7e-23 82.4 0.6 3.5 3 0 0 3 3 3 1 Hpt domain HATPase_c PF02518.21 gi|433591875|ref|YP_007281371.1| - 1.2e-23 82.9 0.0 2.7e-23 81.8 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CheW PF01584.14 gi|433591875|ref|YP_007281371.1| - 1.5e-13 50.3 0.2 3e-13 49.4 0.1 1.5 1 0 0 1 1 1 1 CheW-like domain H-kinase_dim PF02895.9 gi|433591875|ref|YP_007281371.1| - 8.4e-12 45.2 4.6 3.9e-11 43.1 3.2 2.3 1 0 0 1 1 1 1 Signal transducing histidine kinase, homodimeric domain P2 PF07194.6 gi|433591875|ref|YP_007281371.1| - 2.5e-07 30.4 0.0 1e-06 28.4 0.0 2.1 1 0 0 1 1 1 1 P2 response regulator binding domain HATPase_c_2 PF13581.1 gi|433591875|ref|YP_007281371.1| - 2.7e-06 27.1 0.2 2.7e-06 27.1 0.1 2.4 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.1 gi|433591875|ref|YP_007281371.1| - 0.00066 19.3 0.0 0.0016 18.0 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CheB_methylest PF01339.12 gi|433591876|ref|YP_007281372.1| - 1.7e-62 210.0 0.6 3.7e-62 209.0 0.4 1.6 1 0 0 1 1 1 1 CheB methylesterase Response_reg PF00072.19 gi|433591876|ref|YP_007281372.1| - 9.4e-25 86.8 0.1 2.6e-24 85.3 0.1 1.7 1 0 0 1 1 1 1 Response regulator receiver domain Response_reg PF00072.19 gi|433591877|ref|YP_007281373.1| - 2.3e-30 104.8 0.1 2.6e-30 104.7 0.1 1.0 1 0 0 1 1 1 1 Response regulator receiver domain B12-binding PF02310.14 gi|433591877|ref|YP_007281373.1| - 0.0084 15.9 0.0 0.011 15.5 0.0 1.3 1 0 0 1 1 1 1 B12 binding domain CheW PF01584.14 gi|433591878|ref|YP_007281374.1| - 1e-21 76.8 0.7 1.7e-21 76.1 0.5 1.4 1 0 0 1 1 1 1 CheW-like domain CheW PF01584.14 gi|433591879|ref|YP_007281375.1| - 9.4e-15 54.2 0.0 1.1e-14 54.0 0.0 1.0 1 0 0 1 1 1 1 CheW-like domain DUF4366 PF14283.1 gi|433591880|ref|YP_007281376.1| - 1.2e-05 24.8 0.0 0.0094 15.3 0.0 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF4366) COX14 PF14880.1 gi|433591880|ref|YP_007281376.1| - 0.051 13.2 0.0 0.093 12.3 0.0 1.3 1 0 0 1 1 1 0 Cytochrome oxidase c assembly DUF2110 PF09883.4 gi|433591881|ref|YP_007281377.1| - 3.5e-88 295.0 0.0 4e-88 294.8 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2110) TFIIE_alpha PF02002.12 gi|433591882|ref|YP_007281378.1| - 4.5e-19 67.8 0.1 8.8e-19 66.9 0.1 1.5 2 0 0 2 2 2 1 TFIIE alpha subunit Sigma70_r3 PF04539.11 gi|433591882|ref|YP_007281378.1| - 0.0031 17.3 0.1 0.0087 15.9 0.1 1.7 1 0 0 1 1 1 1 Sigma-70 region 3 DNA_ligase_ZBD PF03119.11 gi|433591882|ref|YP_007281378.1| - 0.0055 16.3 0.3 0.011 15.4 0.2 1.5 1 0 0 1 1 1 1 NAD-dependent DNA ligase C4 zinc finger domain Rad50_zn_hook PF04423.9 gi|433591882|ref|YP_007281378.1| - 0.013 14.9 0.3 0.14 11.6 0.0 2.4 2 0 0 2 2 2 0 Rad50 zinc hook motif zf-Mss51 PF13824.1 gi|433591882|ref|YP_007281378.1| - 0.047 13.5 0.7 0.52 10.2 0.1 2.3 2 0 0 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 TF_Zn_Ribbon PF08271.7 gi|433591882|ref|YP_007281378.1| - 0.079 12.2 1.9 0.74 9.1 0.1 2.7 2 0 0 2 2 2 0 TFIIB zinc-binding HTH_20 PF12840.2 gi|433591882|ref|YP_007281378.1| - 0.079 12.7 0.1 0.28 11.0 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain zinc-ribbons_6 PF07191.7 gi|433591882|ref|YP_007281378.1| - 0.1 12.4 0.1 0.21 11.3 0.1 1.5 1 1 0 1 1 1 0 zinc-ribbons zf-C2H2_6 PF13912.1 gi|433591882|ref|YP_007281378.1| - 0.13 12.2 1.4 2.9 7.9 0.1 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger Lactamase_B PF00753.22 gi|433591883|ref|YP_007281379.1| - 5.8e-26 91.3 3.5 9.9e-26 90.5 2.4 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|433591883|ref|YP_007281379.1| - 1e-08 34.9 0.0 1.4e-08 34.5 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|433591883|ref|YP_007281379.1| - 0.002 17.8 0.0 0.0057 16.3 0.0 1.9 1 1 0 1 1 1 1 Beta-lactamase superfamily domain AMP-binding PF00501.23 gi|433591884|ref|YP_007281380.1| - 1.9e-101 339.5 0.1 2.2e-101 339.2 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|433591884|ref|YP_007281380.1| - 2.1e-18 67.0 0.5 2.1e-18 67.0 0.3 1.9 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain HTH_24 PF13412.1 gi|433591885|ref|YP_007281381.1| - 0.14 11.5 0.0 0.51 9.7 0.0 1.9 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding Trm56 PF01994.11 gi|433591886|ref|YP_007281382.1| - 3.2e-46 156.0 0.0 4.7e-46 155.4 0.0 1.2 1 0 0 1 1 1 1 tRNA ribose 2'-O-methyltransferase, aTrm56 Cupin_2 PF07883.6 gi|433591887|ref|YP_007281383.1| - 1.2e-16 59.9 0.0 1.9e-16 59.3 0.0 1.3 1 0 0 1 1 1 1 Cupin domain Cupin_3 PF05899.7 gi|433591887|ref|YP_007281383.1| - 4.2e-05 22.8 0.0 0.00012 21.3 0.0 1.7 1 1 0 1 1 1 1 Protein of unknown function (DUF861) DUF4401 PF14351.1 gi|433591888|ref|YP_007281384.1| - 0.0084 15.1 0.8 0.01 14.8 0.6 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4401) DUF454 PF04304.8 gi|433591888|ref|YP_007281384.1| - 3.4 7.7 6.0 4.7 7.3 4.2 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF454) Usp PF00582.21 gi|433591889|ref|YP_007281385.1| - 1.1e-37 129.3 0.9 1.2e-37 129.1 0.6 1.0 1 0 0 1 1 1 1 Universal stress protein family AP_endonuc_2 PF01261.19 gi|433591889|ref|YP_007281385.1| - 0.08 12.2 0.1 0.097 11.9 0.1 1.1 1 0 0 1 1 1 0 Xylose isomerase-like TIM barrel SSF PF00474.12 gi|433591890|ref|YP_007281386.1| - 1.7e-53 181.7 33.0 2.5e-53 181.1 22.9 1.2 1 0 0 1 1 1 1 Sodium:solute symporter family DUF4212 PF13937.1 gi|433591891|ref|YP_007281387.1| - 1.2e-26 92.5 0.2 1.4e-26 92.2 0.2 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4212) AMP-binding PF00501.23 gi|433591892|ref|YP_007281388.1| - 5e-94 315.0 0.1 6.1e-94 314.7 0.1 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|433591892|ref|YP_007281388.1| - 2.1e-15 57.4 0.5 1.8e-14 54.4 0.4 2.3 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain HTH_10 PF04967.7 gi|433591893|ref|YP_007281389.1| - 2.3e-17 62.3 0.0 4.6e-17 61.3 0.0 1.5 1 0 0 1 1 1 1 HTH DNA binding domain PAS_9 PF13426.1 gi|433591893|ref|YP_007281389.1| - 1.5e-15 57.3 0.0 3.7e-15 56.1 0.0 1.7 1 0 0 1 1 1 1 PAS domain PAS_4 PF08448.5 gi|433591893|ref|YP_007281389.1| - 2.9e-11 43.3 0.8 1.3e-10 41.2 0.6 2.2 1 0 0 1 1 1 1 PAS fold Phage_integrase PF00589.17 gi|433591893|ref|YP_007281389.1| - 1.1e-10 41.4 0.0 3.3e-10 39.9 0.0 1.8 1 0 0 1 1 1 1 Phage integrase family PAS PF00989.19 gi|433591893|ref|YP_007281389.1| - 1e-08 34.9 0.0 3e-08 33.4 0.0 1.8 1 0 0 1 1 1 1 PAS fold GAF_2 PF13185.1 gi|433591893|ref|YP_007281389.1| - 1.8e-06 28.5 0.3 6e-06 26.8 0.2 2.0 1 0 0 1 1 1 1 GAF domain GAF_3 PF13492.1 gi|433591893|ref|YP_007281389.1| - 0.00011 22.3 0.1 0.00062 19.8 0.0 2.3 2 0 0 2 2 2 1 GAF domain GAF PF01590.21 gi|433591893|ref|YP_007281389.1| - 0.0049 17.0 0.0 0.017 15.2 0.0 2.0 1 0 0 1 1 1 1 GAF domain Sigma70_r4 PF04545.11 gi|433591893|ref|YP_007281389.1| - 0.029 13.6 0.0 0.075 12.3 0.0 1.7 1 0 0 1 1 1 0 Sigma-70, region 4 PAS_8 PF13188.1 gi|433591893|ref|YP_007281389.1| - 0.032 14.0 0.0 0.12 12.3 0.0 1.9 1 0 0 1 1 1 0 PAS domain PAS_10 PF13596.1 gi|433591893|ref|YP_007281389.1| - 0.049 13.8 0.0 0.12 12.6 0.0 1.7 1 0 0 1 1 1 0 PAS domain PAS_3 PF08447.6 gi|433591893|ref|YP_007281389.1| - 0.065 13.3 0.0 0.19 11.8 0.0 1.9 1 0 0 1 1 1 0 PAS fold HTH_22 PF13309.1 gi|433591893|ref|YP_007281389.1| - 0.18 11.6 0.0 0.36 10.6 0.0 1.5 1 0 0 1 1 1 0 HTH domain AMP-binding PF00501.23 gi|433591894|ref|YP_007281390.1| - 1.9e-95 319.7 0.1 2.3e-95 319.4 0.1 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|433591894|ref|YP_007281390.1| - 5.1e-16 59.3 0.2 1.1e-15 58.2 0.1 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Usp PF00582.21 gi|433591895|ref|YP_007281391.1| - 1.1e-10 41.8 0.6 1.4e-10 41.5 0.4 1.2 1 0 0 1 1 1 1 Universal stress protein family ETF PF01012.16 gi|433591895|ref|YP_007281391.1| - 0.081 12.6 0.8 1.4 8.5 0.5 2.1 1 1 0 1 1 1 0 Electron transfer flavoprotein domain Usp PF00582.21 gi|433591896|ref|YP_007281392.1| - 2.1e-32 112.2 2.6 2.4e-32 112.0 1.8 1.0 1 0 0 1 1 1 1 Universal stress protein family MtrF PF09472.5 gi|433591898|ref|YP_007281394.1| - 0.1 11.8 0.5 0.24 10.6 0.3 1.6 1 0 0 1 1 1 0 Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF) TOBE PF03459.12 gi|433591899|ref|YP_007281395.1| - 3.8e-12 46.1 6.7 1.6e-11 44.1 0.5 2.9 2 1 0 2 2 2 2 TOBE domain HTH_1 PF00126.22 gi|433591899|ref|YP_007281395.1| - 5.3e-08 32.4 2.8 5.4e-08 32.4 0.1 2.3 3 0 0 3 3 3 1 Bacterial regulatory helix-turn-helix protein, lysR family ABC_tran PF00005.22 gi|433591900|ref|YP_007281396.1| - 2.6e-31 108.7 0.0 4.1e-31 108.1 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|433591900|ref|YP_007281396.1| - 5.9e-09 36.3 0.0 0.00025 21.1 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|433591900|ref|YP_007281396.1| - 2.6e-06 27.5 3.6 1.5e-05 25.0 2.5 2.0 1 1 0 1 1 1 1 AAA ATPase domain AAA_19 PF13245.1 gi|433591900|ref|YP_007281396.1| - 6.4e-06 25.8 0.8 0.05 13.3 0.1 2.6 2 0 0 2 2 2 2 Part of AAA domain SbcCD_C PF13558.1 gi|433591900|ref|YP_007281396.1| - 9e-05 22.3 0.5 0.0014 18.4 0.3 2.3 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_22 PF13401.1 gi|433591900|ref|YP_007281396.1| - 0.00017 21.7 0.0 0.0032 17.6 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_10 PF12846.2 gi|433591900|ref|YP_007281396.1| - 0.0029 17.1 0.1 0.51 9.7 0.0 2.2 2 0 0 2 2 2 1 AAA-like domain SMC_N PF02463.14 gi|433591900|ref|YP_007281396.1| - 0.0035 16.6 0.0 0.13 11.4 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_33 PF13671.1 gi|433591900|ref|YP_007281396.1| - 0.0065 16.3 0.0 0.027 14.3 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.1 gi|433591900|ref|YP_007281396.1| - 0.0098 15.4 0.7 0.14 11.7 0.1 2.3 2 1 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|433591900|ref|YP_007281396.1| - 0.011 15.1 0.0 0.022 14.3 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_17 PF13207.1 gi|433591900|ref|YP_007281396.1| - 0.017 15.9 3.6 0.049 14.4 2.5 2.1 1 1 0 1 1 1 0 AAA domain MobB PF03205.9 gi|433591900|ref|YP_007281396.1| - 0.02 14.5 0.3 0.088 12.5 0.1 2.1 2 1 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B DUF258 PF03193.11 gi|433591900|ref|YP_007281396.1| - 0.078 12.1 0.0 0.11 11.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF258 UPF0079 PF02367.12 gi|433591900|ref|YP_007281396.1| - 0.11 12.1 0.1 0.18 11.4 0.1 1.3 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 IstB_IS21 PF01695.12 gi|433591900|ref|YP_007281396.1| - 0.11 11.8 0.0 2.8 7.3 0.0 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_25 PF13481.1 gi|433591900|ref|YP_007281396.1| - 0.15 11.4 2.5 0.89 8.9 1.7 2.2 1 1 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|433591900|ref|YP_007281396.1| - 0.15 11.6 0.1 0.33 10.5 0.1 1.6 1 1 1 2 2 2 0 NACHT domain AAA_18 PF13238.1 gi|433591900|ref|YP_007281396.1| - 0.17 12.1 0.6 0.57 10.4 0.1 2.0 2 0 0 2 2 2 0 AAA domain BPD_transp_1 PF00528.17 gi|433591901|ref|YP_007281397.1| - 2e-13 50.3 7.6 2e-13 50.3 5.3 1.4 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component DUF3981 PF13139.1 gi|433591901|ref|YP_007281397.1| - 0.081 12.9 2.0 0.11 12.4 0.3 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF3981) PBP_like_2 PF12849.2 gi|433591902|ref|YP_007281398.1| - 7.2e-22 78.1 1.0 8.4e-22 77.9 0.7 1.1 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_11 PF13531.1 gi|433591902|ref|YP_007281398.1| - 9e-10 38.5 0.0 1.5e-07 31.2 0.1 2.1 2 0 0 2 2 2 2 Bacterial extracellular solute-binding protein PBP_like PF12727.2 gi|433591902|ref|YP_007281398.1| - 0.00064 18.7 0.1 0.0011 18.0 0.1 1.3 1 0 0 1 1 1 1 PBP superfamily domain LysR_substrate PF03466.15 gi|433591902|ref|YP_007281398.1| - 0.0078 15.3 0.0 0.012 14.7 0.0 1.2 1 0 0 1 1 1 1 LysR substrate binding domain TAT_signal PF10518.4 gi|433591902|ref|YP_007281398.1| - 0.015 15.2 1.5 0.074 13.0 0.2 2.6 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence Lip_A_acyltrans PF03279.8 gi|433591902|ref|YP_007281398.1| - 0.058 12.2 0.0 0.085 11.7 0.0 1.1 1 0 0 1 1 1 0 Bacterial lipid A biosynthesis acyltransferase Phosphonate-bd PF12974.2 gi|433591902|ref|YP_007281398.1| - 0.073 12.4 0.0 9.1 5.5 0.0 2.3 2 1 0 2 2 2 0 ABC transporter, phosphonate, periplasmic substrate-binding protein DHHW PF14286.1 gi|433591904|ref|YP_007281400.1| - 0.43 9.8 5.0 0.6 9.3 3.5 1.3 1 0 0 1 1 1 0 DHHW protein Rick_17kDa_Anti PF05433.10 gi|433591905|ref|YP_007281401.1| - 0.03 13.9 2.0 0.044 13.4 1.4 1.2 1 0 0 1 1 1 0 Glycine zipper 2TM domain Gly-zipper_Omp PF13488.1 gi|433591905|ref|YP_007281401.1| - 0.097 12.3 3.0 0.17 11.5 2.1 1.3 1 0 0 1 1 1 0 Glycine zipper Zip PF02535.17 gi|433591905|ref|YP_007281401.1| - 0.31 9.9 3.0 0.36 9.7 2.1 1.2 1 0 0 1 1 1 0 ZIP Zinc transporter Hid1 PF12722.2 gi|433591905|ref|YP_007281401.1| - 1.6 6.2 7.7 1.4 6.4 5.3 1.1 1 0 0 1 1 1 0 High-temperature-induced dauer-formation protein RR_TM4-6 PF06459.7 gi|433591905|ref|YP_007281401.1| - 3.2 7.5 17.8 4.1 7.2 12.3 1.4 1 0 0 1 1 1 0 Ryanodine Receptor TM 4-6 Nop14 PF04147.7 gi|433591905|ref|YP_007281401.1| - 5.5 4.7 33.8 6 4.6 23.5 1.2 1 0 0 1 1 1 0 Nop14-like family CENP-T PF15511.1 gi|433591905|ref|YP_007281401.1| - 5.6 6.0 25.3 6.6 5.8 17.5 1.2 1 0 0 1 1 1 0 Centromere kinetochore component CENP-T Herpes_DNAp_acc PF04929.7 gi|433591905|ref|YP_007281401.1| - 9.4 5.0 6.9 11 4.8 4.8 1.1 1 0 0 1 1 1 0 Herpes DNA replication accessory factor Ycf1 PF05758.7 gi|433591906|ref|YP_007281402.1| - 0.15 9.7 5.8 0.19 9.4 4.0 1.2 1 0 0 1 1 1 0 Ycf1 PQQ_2 PF13360.1 gi|433591907|ref|YP_007281403.1| - 1e-12 48.0 8.5 6.3e-07 29.0 1.6 3.3 2 1 0 3 3 3 3 PQQ-like domain PQQ PF01011.16 gi|433591907|ref|YP_007281403.1| - 1e-11 43.7 4.6 2.4e-06 26.8 0.1 5.5 4 0 0 4 4 4 3 PQQ enzyme repeat PQQ_3 PF13570.1 gi|433591907|ref|YP_007281403.1| - 2.1e-07 30.9 32.3 0.53 10.6 0.4 8.9 7 3 0 7 7 7 6 PQQ-like domain DUF3209 PF11483.3 gi|433591908|ref|YP_007281404.1| - 4.9e-56 188.3 3.6 5.4e-56 188.2 2.5 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3209) Ribosomal_S7e PF01251.13 gi|433591908|ref|YP_007281404.1| - 0.096 12.1 0.1 0.13 11.7 0.1 1.1 1 0 0 1 1 1 0 Ribosomal protein S7e CbiX PF01903.12 gi|433591909|ref|YP_007281405.1| - 6.8e-45 151.5 0.0 1.8e-21 76.2 0.2 2.4 2 0 0 2 2 2 2 CbiX 2Fe-2S_thioredx PF01257.14 gi|433591909|ref|YP_007281405.1| - 7.2e-08 32.1 0.1 1.3e-07 31.3 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin-like [2Fe-2S] ferredoxin CbiK PF06180.6 gi|433591909|ref|YP_007281405.1| - 0.0003 19.9 0.0 0.59 9.1 0.0 2.1 2 0 0 2 2 2 2 Cobalt chelatase (CbiK) Suc_Fer-like PF06999.7 gi|433591909|ref|YP_007281405.1| - 0.0012 18.9 0.0 0.0039 17.2 0.0 1.8 2 0 0 2 2 2 1 Sucrase/ferredoxin-like TPP_enzyme_M PF00205.17 gi|433591909|ref|YP_007281405.1| - 0.031 14.0 0.0 1 9.1 0.0 2.4 2 0 0 2 2 2 0 Thiamine pyrophosphate enzyme, central domain ETF_alpha PF00766.14 gi|433591909|ref|YP_007281405.1| - 0.1 12.2 0.0 12 5.6 0.0 3.0 2 1 1 3 3 3 0 Electron transfer flavoprotein FAD-binding domain LAGLIDADG_3 PF14528.1 gi|433591910|ref|YP_007281406.1| - 0.15 12.3 0.0 0.32 11.2 0.0 1.5 1 0 0 1 1 1 0 LAGLIDADG-like domain Fer4_15 PF13459.1 gi|433591911|ref|YP_007281407.1| - 1.2e-13 51.4 7.0 1.6e-13 50.9 4.9 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|433591911|ref|YP_007281407.1| - 0.0051 17.1 6.0 0.0099 16.2 4.1 1.7 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_19 PF06902.6 gi|433591911|ref|YP_007281407.1| - 0.0055 16.5 0.8 0.6 9.9 0.5 2.2 1 1 0 1 1 1 1 Divergent 4Fe-4S mono-cluster DUF3534 PF12053.3 gi|433591911|ref|YP_007281407.1| - 0.054 13.3 1.5 0.063 13.1 1.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3534) Fer4 PF00037.22 gi|433591911|ref|YP_007281407.1| - 1.2 8.8 3.4 1.5 8.5 0.4 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_6 PF12837.2 gi|433591911|ref|YP_007281407.1| - 4.1 7.4 8.4 11 6.0 0.1 3.4 4 0 0 4 4 4 0 4Fe-4S binding domain TP_methylase PF00590.15 gi|433591912|ref|YP_007281408.1| - 9.7e-37 126.7 0.1 1.2e-36 126.4 0.1 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases TP_methylase PF00590.15 gi|433591913|ref|YP_007281409.1| - 3.5e-41 141.2 0.0 4.2e-41 140.9 0.0 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases CbiG_N PF11760.3 gi|433591914|ref|YP_007281410.1| - 2.4e-30 104.0 0.0 9.1e-30 102.2 0.0 2.0 2 0 0 2 2 2 1 Cobalamin synthesis G N-terminal CbiG_C PF01890.11 gi|433591914|ref|YP_007281410.1| - 8.4e-27 93.8 0.0 1.9e-26 92.6 0.0 1.6 1 0 0 1 1 1 1 Cobalamin synthesis G C-terminus AIRS PF00586.19 gi|433591914|ref|YP_007281410.1| - 0.033 14.4 0.2 0.1 12.8 0.2 1.8 1 0 0 1 1 1 0 AIR synthase related protein, N-terminal domain TP_methylase PF00590.15 gi|433591915|ref|YP_007281411.1| - 4.5e-37 127.8 0.1 6e-37 127.3 0.1 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Radical_SAM PF04055.16 gi|433591915|ref|YP_007281411.1| - 0.035 14.2 0.0 0.059 13.5 0.0 1.4 1 0 0 1 1 1 0 Radical SAM superfamily PhoU_div PF01865.11 gi|433591915|ref|YP_007281411.1| - 0.11 11.6 0.1 0.99 8.5 0.0 2.2 2 1 1 3 3 3 0 Protein of unknown function DUF47 TP_methylase PF00590.15 gi|433591916|ref|YP_007281412.1| - 1e-35 123.3 0.2 1.6e-35 122.7 0.1 1.3 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Glyoxalase_2 PF12681.2 gi|433591916|ref|YP_007281412.1| - 0.078 13.5 0.2 0.23 12.0 0.1 1.9 1 1 1 2 2 2 0 Glyoxalase-like domain MspA PF09203.6 gi|433591916|ref|YP_007281412.1| - 0.08 12.3 0.3 5.6 6.3 0.0 2.6 2 1 0 2 2 2 0 MspA Methyltransf_18 PF12847.2 gi|433591917|ref|YP_007281413.1| - 2.2e-09 37.8 0.1 2.9e-09 37.4 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|433591917|ref|YP_007281413.1| - 0.00062 19.7 0.2 0.001 19.0 0.2 1.4 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|433591917|ref|YP_007281413.1| - 0.001 18.4 0.1 0.0026 17.1 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase small domain Methyltransf_11 PF08241.7 gi|433591917|ref|YP_007281413.1| - 0.0012 19.2 0.1 0.0023 18.3 0.1 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|433591917|ref|YP_007281413.1| - 0.0029 17.9 0.0 0.004 17.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|433591917|ref|YP_007281413.1| - 0.019 14.4 0.0 0.031 13.8 0.0 1.3 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) RrnaAD PF00398.15 gi|433591917|ref|YP_007281413.1| - 0.024 13.6 0.0 0.039 12.9 0.0 1.3 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase GATase_3 PF07685.9 gi|433591917|ref|YP_007281413.1| - 0.075 12.6 0.0 0.17 11.4 0.0 1.6 2 0 0 2 2 2 0 CobB/CobQ-like glutamine amidotransferase domain Methyltransf_16 PF10294.4 gi|433591917|ref|YP_007281413.1| - 0.086 12.2 0.0 0.13 11.7 0.0 1.2 1 0 0 1 1 1 0 Putative methyltransferase adh_short PF00106.20 gi|433591918|ref|YP_007281414.1| - 4e-44 150.4 0.2 5.1e-44 150.1 0.1 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|433591918|ref|YP_007281414.1| - 3e-25 89.4 0.0 3.4e-25 89.2 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|433591918|ref|YP_007281414.1| - 1.1e-23 83.7 0.1 1.6e-23 83.2 0.0 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|433591918|ref|YP_007281414.1| - 0.00014 21.3 0.1 0.00019 20.9 0.1 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.1 gi|433591918|ref|YP_007281414.1| - 0.028 14.4 0.1 0.041 13.9 0.1 1.3 1 0 0 1 1 1 0 NADH(P)-binding GATase_3 PF07685.9 gi|433591919|ref|YP_007281415.1| - 4.3e-31 107.6 0.1 6.4e-31 107.0 0.1 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.18 gi|433591919|ref|YP_007281415.1| - 6.6e-20 71.3 0.0 1.7e-19 70.0 0.0 1.7 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.1 gi|433591919|ref|YP_007281415.1| - 1.6e-09 37.6 0.0 1.9e-05 24.3 0.0 2.2 2 0 0 2 2 2 2 AAA domain CTP_synth_N PF06418.9 gi|433591919|ref|YP_007281415.1| - 0.0021 17.1 0.0 0.0034 16.5 0.0 1.2 1 0 0 1 1 1 1 CTP synthase N-terminus SNO PF01174.14 gi|433591919|ref|YP_007281415.1| - 0.016 14.8 0.0 0.029 13.9 0.0 1.3 1 0 0 1 1 1 0 SNO glutamine amidotransferase family PRK PF00485.13 gi|433591919|ref|YP_007281415.1| - 0.13 11.8 0.0 0.43 10.1 0.0 1.7 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family DUF1802 PF08819.6 gi|433591920|ref|YP_007281416.1| - 7.7e-31 107.0 0.0 8.8e-31 106.8 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1802) RuvA_C PF07499.8 gi|433591921|ref|YP_007281417.1| - 0.098 12.8 0.0 0.61 10.3 0.0 2.0 2 0 0 2 2 2 0 RuvA, C-terminal domain Plasmid_killer PF05015.8 gi|433591921|ref|YP_007281417.1| - 0.1 12.7 0.0 0.1 12.7 0.0 1.1 1 0 0 1 1 1 0 Plasmid maintenance system killer protein PEMT PF04191.8 gi|433591922|ref|YP_007281418.1| - 5.6e-18 65.0 0.9 9.7e-18 64.2 0.6 1.4 1 0 0 1 1 1 1 Phospholipid methyltransferase ICMT PF04140.9 gi|433591922|ref|YP_007281418.1| - 9.4e-16 57.8 0.0 1.4e-15 57.2 0.0 1.3 1 0 0 1 1 1 1 Isoprenylcysteine carboxyl methyltransferase (ICMT) family DUF1295 PF06966.7 gi|433591922|ref|YP_007281418.1| - 8e-05 22.0 0.0 0.00011 21.5 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1295) ERG4_ERG24 PF01222.12 gi|433591922|ref|YP_007281418.1| - 0.036 12.6 0.0 0.085 11.3 0.0 1.6 1 1 0 1 1 1 0 Ergosterol biosynthesis ERG4/ERG24 family TP_methylase PF00590.15 gi|433591923|ref|YP_007281419.1| - 8.6e-38 130.1 0.7 1e-37 129.9 0.5 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases CbiC PF02570.10 gi|433591924|ref|YP_007281420.1| - 6.7e-48 162.7 0.7 8.6e-48 162.3 0.5 1.1 1 0 0 1 1 1 1 Precorrin-8X methylmutase CobN-Mg_chel PF02514.11 gi|433591925|ref|YP_007281421.1| - 0 1219.3 0.1 0 1219.0 0.0 1.1 1 0 0 1 1 1 1 CobN/Magnesium Chelatase LexA_DNA_bind PF01726.11 gi|433591925|ref|YP_007281421.1| - 0.0047 16.4 0.0 0.013 15.0 0.0 1.7 1 0 0 1 1 1 1 LexA DNA binding domain VWA_2 PF13519.1 gi|433591926|ref|YP_007281422.1| - 9.6e-19 68.1 0.9 9.6e-19 68.1 0.6 1.7 2 0 0 2 2 2 1 von Willebrand factor type A domain VWA PF00092.23 gi|433591926|ref|YP_007281422.1| - 2.4e-13 50.1 0.0 3.9e-13 49.5 0.0 1.3 1 0 0 1 1 1 1 von Willebrand factor type A domain Mg_chelatase PF01078.16 gi|433591926|ref|YP_007281422.1| - 3.9e-13 49.0 0.1 9.9e-09 34.6 0.0 2.7 3 0 0 3 3 3 2 Magnesium chelatase, subunit ChlI AAA_5 PF07728.9 gi|433591926|ref|YP_007281422.1| - 4.1e-08 33.0 0.0 0.00023 20.8 0.0 2.5 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) MCM PF00493.18 gi|433591926|ref|YP_007281422.1| - 1e-05 24.5 0.3 0.00022 20.1 0.0 2.5 3 0 0 3 3 3 1 MCM2/3/5 family AAA_16 PF13191.1 gi|433591926|ref|YP_007281422.1| - 0.0017 18.3 1.4 0.0048 16.9 0.0 2.4 3 0 0 3 3 3 1 AAA ATPase domain VWA_3 PF13768.1 gi|433591926|ref|YP_007281422.1| - 0.002 17.8 0.2 0.0038 16.9 0.1 1.5 1 0 0 1 1 1 1 von Willebrand factor type A domain Sigma54_activat PF00158.21 gi|433591926|ref|YP_007281422.1| - 0.0048 16.3 0.0 0.27 10.7 0.0 2.2 2 0 0 2 2 2 1 Sigma-54 interaction domain Mg_chelatase_2 PF13335.1 gi|433591926|ref|YP_007281422.1| - 0.01 16.2 0.4 0.029 14.7 0.3 1.8 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_22 PF13401.1 gi|433591926|ref|YP_007281422.1| - 0.014 15.5 0.1 0.86 9.7 0.0 3.2 3 1 0 3 3 3 0 AAA domain Xan_ur_permease PF00860.15 gi|433591927|ref|YP_007281423.1| - 4e-74 249.4 40.9 1e-73 248.1 28.3 1.6 1 1 0 1 1 1 1 Permease family Abhydrolase_6 PF12697.2 gi|433591928|ref|YP_007281424.1| - 2.8e-36 125.5 3.1 3.2e-36 125.3 2.1 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|433591928|ref|YP_007281424.1| - 1.5e-18 67.2 0.0 3.4e-18 66.0 0.0 1.5 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_5 PF12695.2 gi|433591928|ref|YP_007281424.1| - 2.8e-15 56.3 0.0 1.1e-14 54.3 0.0 1.8 1 1 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.3 gi|433591928|ref|YP_007281424.1| - 6.3e-05 22.7 0.0 0.00011 21.9 0.0 1.4 1 0 0 1 1 1 1 Putative lysophospholipase MaoC_dehydratas PF01575.14 gi|433591929|ref|YP_007281425.1| - 3.3e-22 78.1 0.0 5.4e-22 77.4 0.0 1.3 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.1 gi|433591929|ref|YP_007281425.1| - 8.6e-06 25.5 0.2 3.6e-05 23.5 0.1 2.1 1 1 1 2 2 2 1 N-terminal half of MaoC dehydratase 4HBT PF03061.17 gi|433591929|ref|YP_007281425.1| - 0.00035 20.6 0.4 0.01 15.9 0.0 2.3 2 0 0 2 2 2 1 Thioesterase superfamily 4HBT_2 PF13279.1 gi|433591929|ref|YP_007281425.1| - 0.011 16.2 0.0 0.052 13.9 0.0 1.8 1 1 1 2 2 2 0 Thioesterase-like superfamily PQQ_3 PF13570.1 gi|433591930|ref|YP_007281426.1| - 1.1e-45 152.7 31.3 3.8e-11 42.8 1.8 8.4 8 0 0 8 8 8 8 PQQ-like domain PQQ_2 PF13360.1 gi|433591930|ref|YP_007281426.1| - 5.6e-43 147.1 3.6 8.7e-20 71.1 0.1 3.6 1 1 3 4 4 4 4 PQQ-like domain PQQ PF01011.16 gi|433591930|ref|YP_007281426.1| - 1.8e-35 118.7 11.1 8.4e-08 31.3 0.2 7.4 7 0 0 7 7 7 6 PQQ enzyme repeat Cytochrom_D1 PF02239.11 gi|433591930|ref|YP_007281426.1| - 0.042 12.1 0.0 0.062 11.5 0.0 1.2 1 0 0 1 1 1 0 Cytochrome D1 heme domain PsbP PF01789.11 gi|433591930|ref|YP_007281426.1| - 0.16 11.3 0.0 6.7 6.1 0.0 2.8 3 0 0 3 3 3 0 PsbP PepSY PF03413.14 gi|433591930|ref|YP_007281426.1| - 0.35 11.5 11.9 0.38 11.4 0.0 4.2 4 1 1 5 5 5 0 Peptidase propeptide and YPEB domain TAT_signal PF10518.4 gi|433591930|ref|YP_007281426.1| - 1.1 9.4 4.5 2.5 8.3 3.1 1.7 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence PrgI PF12666.2 gi|433591932|ref|YP_007281428.1| - 0.045 13.8 1.2 0.85 9.8 0.0 2.2 2 0 0 2 2 2 0 PrgI family protein EmrE PF13536.1 gi|433591932|ref|YP_007281428.1| - 1.2 9.3 6.7 1.9 8.7 1.2 2.1 2 0 0 2 2 2 0 Multidrug resistance efflux transporter SbcCD_C PF13558.1 gi|433591933|ref|YP_007281429.1| - 1.7e-05 24.6 0.0 3.9e-05 23.4 0.0 1.6 1 0 0 1 1 1 1 Putative exonuclease SbcCD, C subunit DUF3584 PF12128.3 gi|433591933|ref|YP_007281429.1| - 3.3e-05 21.4 26.5 0.00018 19.0 5.7 2.3 2 0 0 2 2 2 2 Protein of unknown function (DUF3584) COG2 PF06148.6 gi|433591933|ref|YP_007281429.1| - 0.0019 18.0 22.1 0.019 14.8 0.4 4.2 2 2 1 3 3 3 2 COG (conserved oligomeric Golgi) complex component, COG2 FtsK_SpoIIIE PF01580.13 gi|433591933|ref|YP_007281429.1| - 0.0046 16.4 0.4 0.1 12.0 0.0 2.7 3 0 0 3 3 3 1 FtsK/SpoIIIE family Prefoldin_2 PF01920.15 gi|433591933|ref|YP_007281429.1| - 0.0089 15.7 2.3 0.0089 15.7 1.6 5.9 3 2 2 5 5 4 1 Prefoldin subunit Reo_sigmaC PF04582.7 gi|433591933|ref|YP_007281429.1| - 0.0092 15.1 10.8 0.078 12.1 1.2 3.3 2 1 1 3 3 3 1 Reovirus sigma C capsid protein AAA_23 PF13476.1 gi|433591933|ref|YP_007281429.1| - 0.014 15.7 53.2 2.8e+03 -1.6 0.1 3.9 1 1 1 2 2 1 0 AAA domain zf-Di19 PF05605.7 gi|433591933|ref|YP_007281429.1| - 0.018 15.1 0.5 5.4 7.2 0.0 2.4 1 1 1 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding NPV_P10 PF05531.7 gi|433591933|ref|YP_007281429.1| - 0.026 14.7 23.0 0.057 13.6 1.3 4.6 2 2 2 4 4 4 0 Nucleopolyhedrovirus P10 protein Vps39_2 PF10367.4 gi|433591933|ref|YP_007281429.1| - 0.042 14.0 0.2 0.21 11.7 0.2 2.3 1 0 0 1 1 1 0 Vacuolar sorting protein 39 domain 2 DUF1664 PF07889.7 gi|433591933|ref|YP_007281429.1| - 0.042 13.6 29.3 0.027 14.2 1.3 4.2 2 2 2 4 4 4 0 Protein of unknown function (DUF1664) Atg14 PF10186.4 gi|433591933|ref|YP_007281429.1| - 0.053 12.4 31.3 0.064 12.1 6.3 3.1 1 1 0 2 2 2 0 UV radiation resistance protein and autophagy-related subunit 14 Laminin_II PF06009.7 gi|433591933|ref|YP_007281429.1| - 0.082 12.6 27.1 0.42 10.3 4.3 4.1 2 2 1 3 3 3 0 Laminin Domain II V-SNARE PF05008.10 gi|433591933|ref|YP_007281429.1| - 0.098 12.8 26.5 0.13 12.4 3.1 4.4 4 0 0 4 4 4 0 Vesicle transport v-SNARE protein N-terminus AAA_13 PF13166.1 gi|433591933|ref|YP_007281429.1| - 0.12 10.8 38.3 2.5 6.4 8.7 2.7 1 1 1 2 2 2 0 AAA domain TMP_2 PF06791.8 gi|433591933|ref|YP_007281429.1| - 0.12 11.9 0.3 3.1 7.3 0.0 2.5 2 0 0 2 2 2 0 Prophage tail length tape measure protein TBPIP PF07106.8 gi|433591933|ref|YP_007281429.1| - 0.14 11.6 39.3 31 4.0 11.2 4.6 2 2 0 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Fib_alpha PF08702.5 gi|433591933|ref|YP_007281429.1| - 0.16 12.0 28.8 0.042 13.9 4.5 3.7 2 2 1 3 3 3 0 Fibrinogen alpha/beta chain family CENP-F_leu_zip PF10473.4 gi|433591933|ref|YP_007281429.1| - 0.16 11.7 51.4 0.23 11.2 4.6 4.3 2 2 2 4 4 4 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Filament PF00038.16 gi|433591933|ref|YP_007281429.1| - 0.22 10.9 36.5 0.12 11.8 4.0 3.6 2 1 0 3 3 3 0 Intermediate filament protein DivIC PF04977.10 gi|433591933|ref|YP_007281429.1| - 0.29 10.6 39.2 0.43 10.0 1.7 6.3 4 2 1 5 5 5 0 Septum formation initiator Myosin_tail_1 PF01576.14 gi|433591933|ref|YP_007281429.1| - 0.36 8.4 47.1 1.2 6.7 16.9 3.1 2 2 0 2 2 2 0 Myosin tail DEAD PF00270.24 gi|433591933|ref|YP_007281429.1| - 0.43 10.0 3.5 0.6 9.5 0.2 2.7 2 2 0 2 2 2 0 DEAD/DEAH box helicase ATG16 PF08614.6 gi|433591933|ref|YP_007281429.1| - 0.45 10.3 38.4 0.26 11.0 4.1 3.8 1 1 2 3 3 3 0 Autophagy protein 16 (ATG16) Seryl_tRNA_N PF02403.17 gi|433591933|ref|YP_007281429.1| - 0.45 10.5 35.2 0.62 10.0 5.5 4.4 3 1 1 4 4 4 0 Seryl-tRNA synthetase N-terminal domain TPR_MLP1_2 PF07926.7 gi|433591933|ref|YP_007281429.1| - 0.46 10.2 33.1 0.15 11.7 2.7 4.4 1 1 1 3 3 3 0 TPR/MLP1/MLP2-like protein PilJ PF13675.1 gi|433591933|ref|YP_007281429.1| - 0.52 10.6 12.1 0.15 12.4 0.9 3.7 2 2 0 2 2 2 0 Type IV pili methyl-accepting chemotaxis transducer N-term DUF948 PF06103.6 gi|433591933|ref|YP_007281429.1| - 0.74 9.7 14.4 0.36 10.7 0.6 4.1 4 0 0 4 4 4 0 Bacterial protein of unknown function (DUF948) IncA PF04156.9 gi|433591933|ref|YP_007281429.1| - 1.6 8.3 52.4 1 8.9 14.2 3.3 2 1 1 3 3 3 0 IncA protein GAS PF13851.1 gi|433591933|ref|YP_007281429.1| - 2 7.5 42.3 0.066 12.4 9.5 3.2 2 2 1 3 3 3 0 Growth-arrest specific micro-tubule binding DUF4200 PF13863.1 gi|433591933|ref|YP_007281429.1| - 2 8.3 38.9 1.4 8.9 2.1 3.6 3 0 0 3 3 3 0 Domain of unknown function (DUF4200) Spc7 PF08317.6 gi|433591933|ref|YP_007281429.1| - 2.3 6.8 49.4 0.019 13.6 7.4 3.5 3 2 1 4 4 4 0 Spc7 kinetochore protein Mnd1 PF03962.10 gi|433591933|ref|YP_007281429.1| - 3.4 7.2 35.8 5.4 6.6 11.0 3.8 2 2 0 2 2 2 0 Mnd1 family TMPIT PF07851.8 gi|433591933|ref|YP_007281429.1| - 3.6 6.5 23.0 0.029 13.4 2.5 3.1 2 1 1 3 3 3 0 TMPIT-like protein Spc24 PF08286.6 gi|433591933|ref|YP_007281429.1| - 5.3 6.7 37.6 0.43 10.2 1.3 5.2 3 1 1 4 4 4 0 Spc24 subunit of Ndc80 DUF3450 PF11932.3 gi|433591933|ref|YP_007281429.1| - 9.2 5.4 25.2 1.5 8.0 1.8 3.6 3 1 0 3 3 3 0 Protein of unknown function (DUF3450) Cluap1 PF10234.4 gi|433591933|ref|YP_007281429.1| - 9.6 5.3 33.8 0.013 14.6 5.2 3.4 2 2 0 3 3 3 0 Clusterin-associated protein-1 MA3 PF02847.12 gi|433591934|ref|YP_007281430.1| - 0.07 12.8 0.0 0.13 12.0 0.0 1.4 1 0 0 1 1 1 0 MA3 domain DDE_Tnp_1 PF01609.16 gi|433591935|ref|YP_007281431.1| - 0.0077 15.7 0.2 0.031 13.8 0.1 1.9 1 1 0 1 1 1 1 Transposase DDE domain Tash_PEST PF07708.6 gi|433591938|ref|YP_007281434.1| - 0.31 11.0 0.1 0.31 11.0 0.1 1.9 2 0 0 2 2 2 0 Tash protein PEST motif UbiA PF01040.13 gi|433591939|ref|YP_007281435.1| - 1e-38 133.0 21.4 1.2e-38 132.8 14.6 1.2 1 1 0 1 1 1 1 UbiA prenyltransferase family KaiC PF06745.8 gi|433591940|ref|YP_007281436.1| - 0.00017 20.7 0.0 0.00039 19.6 0.0 1.5 1 1 0 1 1 1 1 KaiC DUF835 PF05763.7 gi|433591940|ref|YP_007281436.1| - 0.01 15.3 0.0 0.016 14.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF835) DUF1477 PF07346.6 gi|433591940|ref|YP_007281436.1| - 0.019 15.0 0.3 0.063 13.3 0.2 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF1477) PAXNEB PF05625.6 gi|433591940|ref|YP_007281436.1| - 0.055 12.3 0.0 0.057 12.2 0.0 1.1 1 0 0 1 1 1 0 PAXNEB protein CoA_binding_2 PF13380.1 gi|433591941|ref|YP_007281437.1| - 4.2e-37 126.8 0.1 5e-37 126.6 0.1 1.1 1 0 0 1 1 1 1 CoA binding domain CoA_binding PF02629.14 gi|433591941|ref|YP_007281437.1| - 3.7e-08 33.7 0.0 5.8e-08 33.1 0.0 1.2 1 0 0 1 1 1 1 CoA binding domain GFO_IDH_MocA PF01408.17 gi|433591941|ref|YP_007281437.1| - 0.033 14.6 0.0 0.13 12.7 0.0 1.9 1 1 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold Aurora-A_bind PF09041.5 gi|433591942|ref|YP_007281438.1| - 0.088 12.5 0.1 0.18 11.6 0.1 1.4 1 0 0 1 1 1 0 Aurora-A binding PALP PF00291.20 gi|433591943|ref|YP_007281439.1| - 3.6e-58 197.1 1.0 4e-58 197.0 0.7 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme FIST PF08495.5 gi|433591943|ref|YP_007281439.1| - 0.01 14.9 0.1 0.036 13.2 0.1 1.9 2 0 0 2 2 2 0 FIST N domain RmuC PF02646.11 gi|433591944|ref|YP_007281440.1| - 0.00053 18.9 0.5 0.00066 18.6 0.3 1.1 1 0 0 1 1 1 1 RmuC family DUF2730 PF10805.3 gi|433591944|ref|YP_007281440.1| - 0.0017 18.0 0.5 0.0026 17.4 0.3 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF2730) HAP1_N PF04849.8 gi|433591944|ref|YP_007281440.1| - 0.01 14.8 2.8 0.012 14.6 1.9 1.1 1 0 0 1 1 1 0 HAP1 N-terminal conserved region Med3 PF11593.3 gi|433591944|ref|YP_007281440.1| - 0.013 14.7 1.0 0.016 14.4 0.7 1.0 1 0 0 1 1 1 0 Mediator complex subunit 3 fungal GP41 PF00517.12 gi|433591944|ref|YP_007281440.1| - 0.02 14.4 0.4 0.026 14.1 0.3 1.1 1 0 0 1 1 1 0 Retroviral envelope protein PspB PF06667.7 gi|433591944|ref|YP_007281440.1| - 0.021 14.7 0.2 0.041 13.8 0.1 1.6 1 0 0 1 1 1 0 Phage shock protein B Clp_N PF02861.15 gi|433591944|ref|YP_007281440.1| - 0.021 14.7 1.2 0.035 14.0 0.8 1.3 1 0 0 1 1 1 0 Clp amino terminal domain AAA_13 PF13166.1 gi|433591944|ref|YP_007281440.1| - 0.023 13.1 1.6 0.022 13.2 0.7 1.2 1 1 0 1 1 1 0 AAA domain FbpA PF05833.6 gi|433591944|ref|YP_007281440.1| - 0.031 12.8 1.7 0.037 12.5 1.1 1.3 1 1 0 1 1 1 0 Fibronectin-binding protein A N-terminus (FbpA) DUF1664 PF07889.7 gi|433591944|ref|YP_007281440.1| - 0.036 13.8 0.4 0.055 13.2 0.3 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) NPV_P10 PF05531.7 gi|433591944|ref|YP_007281440.1| - 0.041 14.1 0.2 0.06 13.5 0.2 1.4 1 0 0 1 1 1 0 Nucleopolyhedrovirus P10 protein Atg14 PF10186.4 gi|433591944|ref|YP_007281440.1| - 0.063 12.2 0.3 0.087 11.7 0.2 1.2 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 SlyX PF04102.7 gi|433591944|ref|YP_007281440.1| - 0.077 13.3 6.7 0.057 13.7 2.6 2.3 1 1 1 2 2 2 0 SlyX Phage_GP20 PF06810.6 gi|433591944|ref|YP_007281440.1| - 0.078 12.4 2.9 0.09 12.2 2.0 1.2 1 0 0 1 1 1 0 Phage minor structural protein GP20 Tropomyosin PF00261.15 gi|433591944|ref|YP_007281440.1| - 0.1 11.6 10.0 0.33 9.9 7.0 1.7 1 1 0 1 1 1 0 Tropomyosin CCDC-167 PF15188.1 gi|433591944|ref|YP_007281440.1| - 0.11 12.4 1.2 2.6 8.0 0.8 2.3 1 1 1 2 2 2 0 Coiled-coil domain-containing protein 167 Herpes_UL6 PF01763.11 gi|433591944|ref|YP_007281440.1| - 0.14 10.2 1.2 0.16 10.1 0.9 1.0 1 0 0 1 1 1 0 Herpesvirus UL6 like DUF972 PF06156.8 gi|433591944|ref|YP_007281440.1| - 0.16 12.3 3.8 0.28 11.5 2.7 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF972) Spc24 PF08286.6 gi|433591944|ref|YP_007281440.1| - 0.18 11.5 5.2 0.37 10.4 3.6 1.7 1 1 0 1 1 1 0 Spc24 subunit of Ndc80 bZIP_2 PF07716.10 gi|433591944|ref|YP_007281440.1| - 0.26 11.1 1.5 0.51 10.1 0.3 1.9 2 0 0 2 2 2 0 Basic region leucine zipper Tropomyosin_1 PF12718.2 gi|433591944|ref|YP_007281440.1| - 0.26 11.1 9.2 0.87 9.4 6.4 1.9 1 1 0 1 1 1 0 Tropomyosin like DASH_Spc34 PF08657.5 gi|433591944|ref|YP_007281440.1| - 0.28 10.8 5.3 0.25 10.9 3.0 1.3 1 1 0 1 1 1 0 DASH complex subunit Spc34 Striatin PF08232.7 gi|433591944|ref|YP_007281440.1| - 0.33 11.2 3.4 0.38 11.0 2.4 1.1 1 0 0 1 1 1 0 Striatin family Fmp27_WPPW PF10359.4 gi|433591944|ref|YP_007281440.1| - 0.61 8.4 3.4 0.75 8.1 2.4 1.1 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain DivIVA PF05103.8 gi|433591944|ref|YP_007281440.1| - 0.92 9.5 9.4 3.3 7.7 6.5 1.8 1 1 0 1 1 1 0 DivIVA protein IncA PF04156.9 gi|433591944|ref|YP_007281440.1| - 0.94 9.0 5.0 1.2 8.7 3.4 1.3 1 1 0 1 1 1 0 IncA protein Seryl_tRNA_N PF02403.17 gi|433591944|ref|YP_007281440.1| - 1.4 8.9 5.0 0.32 11.0 0.3 1.9 1 1 1 2 2 2 0 Seryl-tRNA synthetase N-terminal domain DUF2802 PF10975.3 gi|433591944|ref|YP_007281440.1| - 1.7 8.4 6.8 6.9 6.5 4.7 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF2802) DUF848 PF05852.6 gi|433591944|ref|YP_007281440.1| - 2.4 8.0 6.4 0.32 10.8 0.8 1.8 1 1 1 2 2 2 0 Gammaherpesvirus protein of unknown function (DUF848) PRA-PH PF01503.12 gi|433591944|ref|YP_007281440.1| - 2.9 8.2 9.5 5.8e+02 0.8 6.6 2.3 1 1 0 1 1 1 0 Phosphoribosyl-ATP pyrophosphohydrolase DUF2890 PF11081.3 gi|433591944|ref|YP_007281440.1| - 5.5 7.0 8.5 6.8 6.7 5.9 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2890) NAD_synthase PF02540.12 gi|433591945|ref|YP_007281441.1| - 3.1e-45 153.9 0.0 3.5e-45 153.7 0.0 1.0 1 0 0 1 1 1 1 NAD synthase HTH_Tnp_ISL3 PF13542.1 gi|433591945|ref|YP_007281441.1| - 0.065 12.4 2.4 10 5.4 0.1 3.3 3 0 0 3 3 3 0 Helix-turn-helix domain of transposase family ISL3 CASP_C PF08172.7 gi|433591946|ref|YP_007281442.1| - 0.035 13.1 0.4 0.039 12.9 0.3 1.1 1 0 0 1 1 1 0 CASP C terminal MucB_RseB PF03888.9 gi|433591947|ref|YP_007281443.1| - 0.00062 18.8 0.2 0.0015 17.6 0.0 1.7 2 0 0 2 2 2 1 MucB/RseB family MS_channel PF00924.13 gi|433591948|ref|YP_007281444.1| - 1.5e-49 168.1 0.0 2e-49 167.7 0.0 1.1 1 0 0 1 1 1 1 Mechanosensitive ion channel NDUF_B12 PF08122.7 gi|433591948|ref|YP_007281444.1| - 1.2 8.9 3.7 3.1 7.6 2.5 1.7 1 1 0 1 1 1 0 NADH-ubiquinone oxidoreductase B12 subunit family CRS1_YhbY PF01985.16 gi|433591949|ref|YP_007281445.1| - 1.3e-19 69.9 0.0 1.5e-19 69.7 0.0 1.0 1 0 0 1 1 1 1 CRS1 / YhbY (CRM) domain DUF3168 PF11367.3 gi|433591949|ref|YP_007281445.1| - 0.31 11.1 2.9 1.1 9.3 0.2 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF3168) Rpr2 PF04032.11 gi|433591950|ref|YP_007281446.1| - 2.7e-17 62.3 0.0 3.3e-17 62.1 0.0 1.1 1 0 0 1 1 1 1 RNAse P Rpr2/Rpp21/SNM1 subunit domain zf-DNL PF05180.7 gi|433591950|ref|YP_007281446.1| - 0.13 12.0 0.4 0.23 11.2 0.3 1.4 1 0 0 1 1 1 0 DNL zinc finger SBP_bac_5 PF00496.17 gi|433591951|ref|YP_007281447.1| - 3.8e-50 170.7 0.1 1.3e-44 152.6 0.0 2.1 2 0 0 2 2 2 2 Bacterial extracellular solute-binding proteins, family 5 Middle TAT_signal PF10518.4 gi|433591951|ref|YP_007281447.1| - 0.0016 18.2 4.6 0.0035 17.2 3.2 1.6 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence UCR_Fe-S_N PF10399.4 gi|433591951|ref|YP_007281447.1| - 0.051 12.7 0.5 0.15 11.2 0.4 1.8 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal PAP2 PF01569.16 gi|433591952|ref|YP_007281448.1| - 6.9e-16 58.1 3.0 6.9e-16 58.1 2.1 2.1 1 1 1 2 2 2 1 PAP2 superfamily PAP2_3 PF14378.1 gi|433591952|ref|YP_007281448.1| - 4.7e-12 45.8 9.2 9.8e-12 44.7 6.3 1.5 1 0 0 1 1 1 1 PAP2 superfamily Tic20 PF09685.5 gi|433591952|ref|YP_007281448.1| - 0.013 15.5 0.4 0.013 15.5 0.3 3.1 3 0 0 3 3 3 0 Tic20-like protein SBP_bac_5 PF00496.17 gi|433591953|ref|YP_007281449.1| - 8.3e-45 153.2 0.0 1.4e-41 142.5 0.0 2.1 2 0 0 2 2 2 2 Bacterial extracellular solute-binding proteins, family 5 Middle DUF2797 PF10977.3 gi|433591955|ref|YP_007281451.1| - 4.1e-49 167.3 3.6 7.6e-48 163.1 2.5 2.0 1 1 0 1 1 1 1 Protein of unknown function (DUF2797) SoxG PF04268.7 gi|433591955|ref|YP_007281451.1| - 0.057 13.2 0.0 0.2 11.5 0.0 1.8 1 1 1 2 2 2 0 Sarcosine oxidase, gamma subunit family Pectate_lyase_3 PF12708.2 gi|433591957|ref|YP_007281453.1| - 1.1e-15 58.3 0.2 1.4e-13 51.5 0.2 2.4 1 1 1 2 2 2 2 Pectate lyase superfamily protein Beta_helix PF13229.1 gi|433591957|ref|YP_007281453.1| - 5.6e-12 45.6 0.9 4e-05 23.4 0.3 2.3 1 1 1 2 2 2 2 Right handed beta helix region Glyco_hydro_28 PF00295.12 gi|433591957|ref|YP_007281453.1| - 0.0036 16.3 0.2 0.85 8.5 0.2 2.5 2 1 1 3 3 3 2 Glycosyl hydrolases family 28 BsuPI PF12690.2 gi|433591958|ref|YP_007281454.1| - 1.8e-22 78.8 0.0 2.1e-22 78.5 0.0 1.1 1 0 0 1 1 1 1 Intracellular proteinase inhibitor CARDB PF07705.6 gi|433591958|ref|YP_007281454.1| - 0.0028 17.7 0.0 0.0041 17.1 0.0 1.4 1 1 0 1 1 1 1 CARDB CbiX PF01903.12 gi|433591959|ref|YP_007281455.1| - 2.4e-42 143.3 0.8 4.1e-21 75.0 0.0 2.6 3 0 0 3 3 3 2 CbiX CbiK PF06180.6 gi|433591959|ref|YP_007281455.1| - 1.3e-07 31.0 0.1 0.00055 19.1 0.1 2.1 1 1 1 2 2 2 2 Cobalt chelatase (CbiK) DUF3040 PF11239.3 gi|433591961|ref|YP_007281457.1| - 0.74 9.9 4.0 1.3 9.1 2.8 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3040) Trm112p PF03966.11 gi|433591962|ref|YP_007281458.1| - 1.2e-10 41.5 2.2 2.7e-10 40.4 1.6 1.6 1 1 0 1 1 1 1 Trm112p-like protein A2L_zn_ribbon PF08792.5 gi|433591962|ref|YP_007281458.1| - 0.0081 15.5 0.1 0.017 14.5 0.1 1.5 1 0 0 1 1 1 1 A2L zinc ribbon domain zinc_ribbon_2 PF13240.1 gi|433591962|ref|YP_007281458.1| - 0.041 13.3 0.1 0.082 12.4 0.0 1.6 1 0 0 1 1 1 0 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|433591962|ref|YP_007281458.1| - 0.043 13.0 0.1 0.078 12.2 0.1 1.5 1 0 0 1 1 1 0 zinc-ribbon domain DUF1451 PF07295.6 gi|433591962|ref|YP_007281458.1| - 0.044 13.5 0.1 0.044 13.5 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1451) Adenylsucc_synt PF00709.16 gi|433591963|ref|YP_007281459.1| - 3.4e-145 483.9 0.0 4.1e-145 483.6 0.0 1.1 1 0 0 1 1 1 1 Adenylosuccinate synthetase HTH_24 PF13412.1 gi|433591964|ref|YP_007281460.1| - 0.00042 19.6 0.0 0.00086 18.6 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|433591964|ref|YP_007281460.1| - 0.004 16.8 0.2 0.015 14.9 0.1 1.9 1 1 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_12 PF08461.5 gi|433591964|ref|YP_007281460.1| - 0.0051 16.5 0.1 0.0096 15.6 0.0 1.6 1 1 0 1 1 1 1 Ribonuclease R winged-helix domain Phage_rep_org_N PF09681.5 gi|433591964|ref|YP_007281460.1| - 0.021 14.3 0.0 0.043 13.3 0.0 1.5 1 1 1 2 2 2 0 N-terminal phage replisome organiser (Phage_rep_org_N) DUF2250 PF10007.4 gi|433591964|ref|YP_007281460.1| - 0.033 14.0 0.2 0.051 13.4 0.1 1.4 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_5 PF01022.15 gi|433591964|ref|YP_007281460.1| - 0.058 13.0 0.1 0.15 11.7 0.1 1.7 1 1 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|433591964|ref|YP_007281460.1| - 0.071 12.9 0.2 0.21 11.4 0.1 2.0 1 1 0 1 1 1 0 Helix-turn-helix domain MotA_activ PF09114.5 gi|433591964|ref|YP_007281460.1| - 0.09 12.5 0.0 0.1 12.3 0.0 1.2 1 0 0 1 1 1 0 Transcription factor MotA, activation domain IncA PF04156.9 gi|433591965|ref|YP_007281461.1| - 7.9e-05 22.3 5.7 7.9e-05 22.3 3.9 1.6 2 0 0 2 2 1 1 IncA protein Mnd1 PF03962.10 gi|433591965|ref|YP_007281461.1| - 8.7e-05 22.2 1.5 0.0034 17.0 3.4 1.8 2 0 0 2 2 2 1 Mnd1 family bZIP_1 PF00170.16 gi|433591965|ref|YP_007281461.1| - 8.9e-05 22.3 1.8 0.00017 21.4 0.7 1.9 1 1 0 1 1 1 1 bZIP transcription factor DUF2205 PF10224.4 gi|433591965|ref|YP_007281461.1| - 0.00042 19.8 0.7 0.0029 17.1 0.6 2.2 2 0 0 2 2 2 1 Predicted coiled-coil protein (DUF2205) TBPIP PF07106.8 gi|433591965|ref|YP_007281461.1| - 0.00053 19.5 1.4 0.001 18.6 0.9 1.3 1 0 0 1 1 1 1 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) THOC7 PF05615.8 gi|433591965|ref|YP_007281461.1| - 0.00069 19.9 2.6 0.0019 18.4 1.8 1.7 1 0 0 1 1 1 1 Tho complex subunit 7 Fmp27_WPPW PF10359.4 gi|433591965|ref|YP_007281461.1| - 0.0013 17.2 4.9 0.0013 17.2 3.4 1.6 2 0 0 2 2 1 1 RNA pol II promoter Fmp27 protein domain DUF3450 PF11932.3 gi|433591965|ref|YP_007281461.1| - 0.0014 17.9 2.7 0.0036 16.5 1.9 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF3450) TMF_DNA_bd PF12329.3 gi|433591965|ref|YP_007281461.1| - 0.0019 17.9 7.8 0.0096 15.7 5.4 2.1 1 1 0 1 1 1 1 TATA element modulatory factor 1 DNA binding ATG16 PF08614.6 gi|433591965|ref|YP_007281461.1| - 0.0019 18.0 10.9 0.0069 16.2 7.5 2.0 1 0 0 1 1 1 1 Autophagy protein 16 (ATG16) CENP-F_leu_zip PF10473.4 gi|433591965|ref|YP_007281461.1| - 0.0021 17.9 4.7 0.0021 17.9 3.3 1.7 2 0 0 2 2 1 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Atg14 PF10186.4 gi|433591965|ref|YP_007281461.1| - 0.0035 16.3 2.4 0.0054 15.7 1.7 1.2 1 0 0 1 1 1 1 UV radiation resistance protein and autophagy-related subunit 14 Tropomyosin PF00261.15 gi|433591965|ref|YP_007281461.1| - 0.005 15.9 10.0 0.015 14.4 7.0 1.8 1 0 0 1 1 1 1 Tropomyosin DUF972 PF06156.8 gi|433591965|ref|YP_007281461.1| - 0.005 17.1 3.2 0.014 15.7 1.8 2.0 2 0 0 2 2 1 1 Protein of unknown function (DUF972) GAS PF13851.1 gi|433591965|ref|YP_007281461.1| - 0.008 15.3 1.0 0.015 14.5 0.7 1.3 1 0 0 1 1 1 1 Growth-arrest specific micro-tubule binding Tropomyosin_1 PF12718.2 gi|433591965|ref|YP_007281461.1| - 0.011 15.6 10.8 0.011 15.6 7.5 2.5 3 0 0 3 3 2 0 Tropomyosin like HALZ PF02183.13 gi|433591965|ref|YP_007281461.1| - 0.015 15.0 1.9 0.037 13.7 1.1 1.8 1 1 0 1 1 1 0 Homeobox associated leucine zipper DUF904 PF06005.7 gi|433591965|ref|YP_007281461.1| - 0.018 15.3 6.7 0.081 13.2 4.7 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF904) V_ATPase_I PF01496.14 gi|433591965|ref|YP_007281461.1| - 0.046 11.5 0.8 0.065 11.0 0.6 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family Spc7 PF08317.6 gi|433591965|ref|YP_007281461.1| - 0.049 12.2 1.5 0.079 11.5 1.0 1.2 1 0 0 1 1 1 0 Spc7 kinetochore protein bZIP_2 PF07716.10 gi|433591965|ref|YP_007281461.1| - 0.051 13.4 5.8 1.1 9.1 0.7 2.6 1 1 0 2 2 2 0 Basic region leucine zipper APG6 PF04111.7 gi|433591965|ref|YP_007281461.1| - 0.07 12.1 4.6 0.12 11.4 3.2 1.2 1 0 0 1 1 1 0 Autophagy protein Apg6 DUF4201 PF13870.1 gi|433591965|ref|YP_007281461.1| - 0.079 12.3 3.0 0.21 11.0 2.1 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4201) Taxilin PF09728.4 gi|433591965|ref|YP_007281461.1| - 0.081 11.9 2.9 0.12 11.4 2.0 1.1 1 0 0 1 1 1 0 Myosin-like coiled-coil protein Spectrin PF00435.16 gi|433591965|ref|YP_007281461.1| - 0.082 13.1 3.4 0.18 12.0 1.7 2.1 2 0 0 2 2 1 0 Spectrin repeat FlaC_arch PF05377.6 gi|433591965|ref|YP_007281461.1| - 0.1 12.5 0.4 0.34 10.8 0.3 2.0 1 0 0 1 1 1 0 Flagella accessory protein C (FlaC) KLRAQ PF10205.4 gi|433591965|ref|YP_007281461.1| - 0.12 12.4 3.4 0.31 11.0 2.4 1.7 1 0 0 1 1 1 0 Predicted coiled-coil domain-containing protein Scaffolding_pro PF11418.3 gi|433591965|ref|YP_007281461.1| - 0.13 12.5 3.5 0.18 12.1 1.3 2.0 2 0 0 2 2 1 0 Phi29 scaffolding protein DivIC PF04977.10 gi|433591965|ref|YP_007281461.1| - 0.13 11.7 6.1 0.75 9.3 4.2 2.1 1 1 0 1 1 1 0 Septum formation initiator BLOC1_2 PF10046.4 gi|433591965|ref|YP_007281461.1| - 0.15 12.2 1.0 0.43 10.7 0.7 1.8 1 0 0 1 1 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF1664 PF07889.7 gi|433591965|ref|YP_007281461.1| - 0.15 11.8 0.3 0.3 10.8 0.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) ADIP PF11559.3 gi|433591965|ref|YP_007281461.1| - 0.16 11.8 7.6 0.37 10.6 4.8 1.7 1 1 0 1 1 1 0 Afadin- and alpha -actinin-Binding Syntaxin PF00804.20 gi|433591965|ref|YP_007281461.1| - 0.18 12.0 2.6 0.43 10.7 1.8 1.6 1 0 0 1 1 1 0 Syntaxin DUF4164 PF13747.1 gi|433591965|ref|YP_007281461.1| - 0.19 11.8 11.0 0.85 9.7 1.4 3.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4164) Prefoldin_2 PF01920.15 gi|433591965|ref|YP_007281461.1| - 0.21 11.3 7.1 6.4 6.5 0.6 2.8 2 1 1 3 3 2 0 Prefoldin subunit DUF342 PF03961.8 gi|433591965|ref|YP_007281461.1| - 0.24 9.7 0.2 0.37 9.1 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF342) Sec34 PF04136.10 gi|433591965|ref|YP_007281461.1| - 0.27 10.9 0.4 0.47 10.1 0.2 1.3 1 0 0 1 1 1 0 Sec34-like family ERM PF00769.14 gi|433591965|ref|YP_007281461.1| - 0.32 10.5 12.9 0.014 14.9 4.5 2.0 2 0 0 2 2 1 0 Ezrin/radixin/moesin family EMP24_GP25L PF01105.19 gi|433591965|ref|YP_007281461.1| - 0.35 10.5 0.9 0.67 9.6 0.6 1.5 1 0 0 1 1 1 0 emp24/gp25L/p24 family/GOLD Syntaxin-6_N PF09177.6 gi|433591965|ref|YP_007281461.1| - 0.35 11.2 3.8 15 6.1 2.2 2.6 2 0 0 2 2 2 0 Syntaxin 6, N-terminal Spc24 PF08286.6 gi|433591965|ref|YP_007281461.1| - 0.36 10.5 5.0 0.38 10.4 2.0 2.1 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 Bap31 PF05529.7 gi|433591965|ref|YP_007281461.1| - 0.64 9.4 3.2 1.2 8.5 2.2 1.4 1 0 0 1 1 1 0 B-cell receptor-associated protein 31-like TMCO5 PF14992.1 gi|433591965|ref|YP_007281461.1| - 0.86 8.6 4.4 1.6 7.8 3.0 1.3 1 0 0 1 1 1 0 TMCO5 family PspB PF06667.7 gi|433591965|ref|YP_007281461.1| - 1.2 9.1 4.4 8.4 6.4 0.8 2.5 1 1 1 2 2 2 0 Phage shock protein B HAUS6_N PF14661.1 gi|433591965|ref|YP_007281461.1| - 1.2 8.3 4.0 2.2 7.5 2.8 1.3 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 6 N-terminus Cep57_CLD_2 PF14197.1 gi|433591965|ref|YP_007281461.1| - 2.1 8.3 17.7 0.11 12.3 8.2 1.9 2 0 0 2 2 1 0 Centrosome localisation domain of PPC89 DivIVA PF05103.8 gi|433591965|ref|YP_007281461.1| - 2.3 8.2 6.5 6.9 6.7 3.4 2.4 1 1 1 2 2 2 0 DivIVA protein UPF0058 PF01893.11 gi|433591966|ref|YP_007281462.1| - 1.4e-33 114.8 1.1 1.5e-33 114.6 0.8 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0058 DUF2580 PF10824.3 gi|433591966|ref|YP_007281462.1| - 0.044 14.1 0.0 0.061 13.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2580) DUF998 PF06197.8 gi|433591967|ref|YP_007281463.1| - 3.4e-18 65.6 31.6 4e-18 65.3 21.9 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF998) ABC_tran PF00005.22 gi|433591968|ref|YP_007281464.1| - 1.5e-33 115.9 0.0 2.4e-33 115.3 0.0 1.3 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.5 gi|433591968|ref|YP_007281464.1| - 2.1e-10 40.4 1.4 4.2e-10 39.4 0.2 2.1 2 0 0 2 2 2 1 TOBE domain AAA_21 PF13304.1 gi|433591968|ref|YP_007281464.1| - 2.4e-06 27.7 0.0 0.011 15.7 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|433591968|ref|YP_007281464.1| - 0.00077 19.4 0.2 0.0017 18.4 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|433591968|ref|YP_007281464.1| - 0.0011 19.0 0.5 0.0067 16.5 0.3 2.0 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|433591968|ref|YP_007281464.1| - 0.003 17.4 0.0 0.01 15.7 0.0 1.9 1 1 0 1 1 1 1 AAA domain Rad17 PF03215.10 gi|433591968|ref|YP_007281464.1| - 0.0043 15.7 0.1 0.0065 15.2 0.0 1.1 1 0 0 1 1 1 1 Rad17 cell cycle checkpoint protein SbcCD_C PF13558.1 gi|433591968|ref|YP_007281464.1| - 0.017 14.9 0.3 0.11 12.4 0.2 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA PF00004.24 gi|433591968|ref|YP_007281464.1| - 0.03 14.5 0.0 0.083 13.0 0.1 1.7 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) NB-ARC PF00931.17 gi|433591968|ref|YP_007281464.1| - 0.031 13.1 0.0 0.047 12.5 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain AAA_19 PF13245.1 gi|433591968|ref|YP_007281464.1| - 0.056 13.1 0.1 0.13 11.9 0.1 1.6 1 0 0 1 1 1 0 Part of AAA domain DUF258 PF03193.11 gi|433591968|ref|YP_007281464.1| - 0.076 12.1 0.0 0.13 11.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_17 PF13207.1 gi|433591968|ref|YP_007281464.1| - 0.089 13.6 0.4 0.32 11.8 0.3 2.1 1 1 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|433591968|ref|YP_007281464.1| - 0.14 12.0 0.0 0.28 11.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain T2SE PF00437.15 gi|433591970|ref|YP_007281466.1| - 6.9e-51 172.7 0.0 9.9e-51 172.2 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.1 gi|433591970|ref|YP_007281466.1| - 0.058 12.9 0.0 0.12 11.9 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain T2SF PF00482.18 gi|433591971|ref|YP_007281467.1| - 7.1e-37 126.0 4.5 2.8e-20 72.4 0.5 2.8 2 0 0 2 2 2 2 Type II secretion system (T2SS), protein F Peripla_BP_3 PF13377.1 gi|433591971|ref|YP_007281467.1| - 0.013 15.4 1.8 0.091 12.7 0.0 2.7 3 0 0 3 3 3 0 Periplasmic binding protein-like domain DUF632 PF04782.7 gi|433591971|ref|YP_007281467.1| - 0.042 12.9 0.0 0.098 11.7 0.0 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF632) Ribosomal_S13_N PF08069.7 gi|433591972|ref|YP_007281468.1| - 7.9e-24 83.2 0.2 1.3e-23 82.6 0.1 1.3 1 0 0 1 1 1 1 Ribosomal S13/S15 N-terminal domain Ribosomal_S15 PF00312.17 gi|433591972|ref|YP_007281468.1| - 1.4e-21 76.0 0.3 2e-21 75.5 0.2 1.2 1 0 0 1 1 1 1 Ribosomal protein S15 Pcc1 PF09341.5 gi|433591974|ref|YP_007281470.1| - 0.011 15.6 0.7 0.017 15.1 0.5 1.3 1 1 0 1 1 1 0 Transcription factor Pcc1 Ribosomal_S3Ae PF01015.13 gi|433591975|ref|YP_007281471.1| - 1.4e-70 236.5 0.5 1.7e-70 236.3 0.4 1.0 1 0 0 1 1 1 1 Ribosomal S3Ae family PRA-PH PF01503.12 gi|433591975|ref|YP_007281471.1| - 2.7 8.3 6.2 0.25 11.6 0.7 1.9 2 0 0 2 2 2 0 Phosphoribosyl-ATP pyrophosphohydrolase ABM PF03992.11 gi|433591976|ref|YP_007281472.1| - 1.2e-13 50.8 0.6 1.5e-13 50.5 0.4 1.2 1 0 0 1 1 1 1 Antibiotic biosynthesis monooxygenase Copper-bind PF00127.15 gi|433591977|ref|YP_007281473.1| - 1.5e-11 44.4 0.1 3.2e-11 43.3 0.0 1.5 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.1 gi|433591977|ref|YP_007281473.1| - 0.0011 18.8 0.0 1.1 9.1 0.0 2.1 2 0 0 2 2 2 2 Cupredoxin-like domain SnoaL_3 PF13474.1 gi|433591977|ref|YP_007281473.1| - 0.08 12.9 0.1 0.12 12.4 0.1 1.3 1 0 0 1 1 1 0 SnoaL-like domain DUF4523 PF15023.1 gi|433591977|ref|YP_007281473.1| - 0.2 11.1 0.3 11 5.4 0.0 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF4523) CDP-OH_P_transf PF01066.16 gi|433591978|ref|YP_007281474.1| - 6.4e-09 36.0 16.1 9.8e-09 35.4 9.8 2.4 1 1 0 1 1 1 1 CDP-alcohol phosphatidyltransferase HEAT_2 PF13646.1 gi|433591979|ref|YP_007281475.1| - 1.1e-18 67.3 14.1 3.3e-12 46.5 4.5 4.1 3 1 2 5 5 5 2 HEAT repeats HEAT_PBS PF03130.11 gi|433591979|ref|YP_007281475.1| - 3.6e-15 54.8 9.6 9.2e-06 25.6 0.5 5.5 5 0 0 5 5 5 3 PBS lyase HEAT-like repeat HEAT_EZ PF13513.1 gi|433591979|ref|YP_007281475.1| - 8.1e-07 29.3 8.9 0.0054 17.1 0.6 3.6 2 1 1 3 3 3 2 HEAT-like repeat HEAT PF02985.17 gi|433591979|ref|YP_007281475.1| - 4.3e-06 26.3 0.7 0.032 14.3 0.1 3.5 3 0 0 3 3 3 2 HEAT repeat Arm PF00514.18 gi|433591979|ref|YP_007281475.1| - 0.0041 16.9 0.3 2.6 7.9 0.0 3.3 2 1 1 3 3 3 1 Armadillo/beta-catenin-like repeat Reo_sigmaC PF04582.7 gi|433591979|ref|YP_007281475.1| - 0.017 14.3 5.4 1.8 7.6 0.1 2.7 2 1 0 2 2 2 0 Reovirus sigma C capsid protein PilJ PF13675.1 gi|433591979|ref|YP_007281475.1| - 0.026 14.8 14.9 2.2 8.6 1.0 4.5 2 2 3 5 5 5 0 Type IV pili methyl-accepting chemotaxis transducer N-term AAA_13 PF13166.1 gi|433591979|ref|YP_007281475.1| - 0.083 11.3 0.1 0.13 10.6 0.1 1.3 1 0 0 1 1 1 0 AAA domain IncA PF04156.9 gi|433591979|ref|YP_007281475.1| - 0.092 12.3 8.5 0.35 10.4 0.4 2.3 1 1 1 2 2 2 0 IncA protein Fmp27_WPPW PF10359.4 gi|433591979|ref|YP_007281475.1| - 0.13 10.6 0.6 0.25 9.6 0.4 1.5 1 1 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain Pup PF05639.6 gi|433591979|ref|YP_007281475.1| - 0.14 12.6 0.4 0.14 12.6 0.3 4.0 3 2 1 4 4 4 0 Pup-like protein NPV_P10 PF05531.7 gi|433591979|ref|YP_007281475.1| - 0.28 11.4 6.4 5.3 7.3 0.1 4.0 3 1 0 3 3 3 0 Nucleopolyhedrovirus P10 protein Syntaxin-6_N PF09177.6 gi|433591979|ref|YP_007281475.1| - 1.1 9.7 9.8 5.9 7.3 1.7 3.5 2 1 1 3 3 3 0 Syntaxin 6, N-terminal DASH_Dad2 PF08654.5 gi|433591979|ref|YP_007281475.1| - 1.5 8.8 7.1 6 6.9 0.3 2.9 2 1 0 2 2 2 0 DASH complex subunit Dad2 FTA4 PF13093.1 gi|433591979|ref|YP_007281475.1| - 2 7.8 5.9 6.3 6.1 3.9 1.8 1 1 0 1 1 1 0 Kinetochore complex Fta4 of Sim4 subunit, or CENP-50 PLDc_2 PF13091.1 gi|433591980|ref|YP_007281476.1| - 1.2e-38 131.7 0.0 1.3e-22 79.9 0.0 2.2 2 0 0 2 2 2 2 PLD-like domain PLDc PF00614.17 gi|433591980|ref|YP_007281476.1| - 2.4e-06 27.1 1.1 7.6e-06 25.5 0.1 2.3 2 0 0 2 2 2 1 Phospholipase D Active site motif DUF1669 PF07894.7 gi|433591980|ref|YP_007281476.1| - 4.4e-05 22.8 0.0 0.06 12.5 0.0 2.5 2 1 0 2 2 2 2 Protein of unknown function (DUF1669) Regulator_TrmB PF11495.3 gi|433591980|ref|YP_007281476.1| - 0.00022 20.2 0.6 0.15 10.9 0.0 2.5 2 1 0 2 2 2 2 Archaeal transcriptional regulator TrmB Fe_dep_repress PF01325.14 gi|433591981|ref|YP_007281477.1| - 9.7e-18 63.8 0.0 2.2e-17 62.7 0.0 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Fe_dep_repr_C PF02742.10 gi|433591981|ref|YP_007281477.1| - 2.9e-12 46.0 0.1 5.5e-12 45.2 0.1 1.5 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain MarR PF01047.17 gi|433591981|ref|YP_007281477.1| - 0.00025 20.6 0.0 0.00045 19.8 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.1 gi|433591981|ref|YP_007281477.1| - 0.0007 19.3 0.0 0.0017 18.1 0.0 1.6 1 1 0 1 1 1 1 Crp-like helix-turn-helix domain MarR_2 PF12802.2 gi|433591981|ref|YP_007281477.1| - 0.0009 18.8 0.0 0.0016 18.0 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|433591981|ref|YP_007281477.1| - 0.0023 18.2 0.0 0.0038 17.5 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.14 gi|433591981|ref|YP_007281477.1| - 0.0024 17.5 0.0 0.004 16.8 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|433591981|ref|YP_007281477.1| - 0.0027 17.4 0.0 0.0052 16.5 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|433591981|ref|YP_007281477.1| - 0.0036 16.6 0.0 0.0064 15.8 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_13 PF11972.3 gi|433591981|ref|YP_007281477.1| - 0.012 15.4 0.0 0.023 14.5 0.0 1.4 1 0 0 1 1 1 0 HTH DNA binding domain Rrf2 PF02082.15 gi|433591981|ref|YP_007281477.1| - 0.012 15.6 0.0 0.02 15.0 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator HTH_AsnC-type PF13404.1 gi|433591981|ref|YP_007281477.1| - 0.1 12.1 0.0 0.27 10.8 0.0 1.7 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain HTH_12 PF08461.5 gi|433591981|ref|YP_007281477.1| - 0.11 12.2 0.1 0.24 11.1 0.0 1.6 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain GntR PF00392.16 gi|433591981|ref|YP_007281477.1| - 0.11 11.9 0.0 0.3 10.5 0.0 1.8 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family Rubrerythrin PF02915.12 gi|433591982|ref|YP_007281478.1| - 7.6e-05 23.0 1.9 0.00011 22.5 1.2 1.5 1 1 0 1 1 1 1 Rubrerythrin Metal_resist PF13801.1 gi|433591982|ref|YP_007281478.1| - 0.0022 17.9 1.5 0.0022 17.9 1.0 1.6 2 0 0 2 2 2 1 Heavy-metal resistance Ferritin_2 PF13668.1 gi|433591982|ref|YP_007281478.1| - 0.067 13.1 4.5 2 8.3 0.2 2.1 1 1 1 2 2 2 0 Ferritin-like domain FUSC PF04632.7 gi|433591982|ref|YP_007281478.1| - 0.078 11.3 1.3 0.087 11.2 0.9 1.1 1 0 0 1 1 1 0 Fusaric acid resistance protein family DUF892 PF05974.7 gi|433591982|ref|YP_007281478.1| - 0.17 11.6 3.4 0.56 9.9 0.2 2.5 2 1 0 2 2 2 0 Domain of unknown function (DUF892) UPF0051 PF01458.12 gi|433591983|ref|YP_007281479.1| - 1.2e-64 217.9 1.4 1.5e-64 217.6 1.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) UPF0051 PF01458.12 gi|433591984|ref|YP_007281480.1| - 6.7e-70 235.1 0.3 9.3e-70 234.6 0.2 1.2 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) HWE_HK PF07536.9 gi|433591984|ref|YP_007281480.1| - 0.05 14.0 0.0 0.1 13.0 0.0 1.4 1 0 0 1 1 1 0 HWE histidine kinase DinI PF06183.8 gi|433591984|ref|YP_007281480.1| - 0.074 13.0 0.3 0.31 11.0 0.1 2.1 2 0 0 2 2 2 0 DinI-like family ABC_tran PF00005.22 gi|433591985|ref|YP_007281481.1| - 1.5e-15 57.6 0.1 5.5e-15 55.8 0.0 1.8 1 1 0 1 1 1 1 ABC transporter SMC_N PF02463.14 gi|433591985|ref|YP_007281481.1| - 9.1e-06 25.0 0.2 0.051 12.8 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_21 PF13304.1 gi|433591985|ref|YP_007281481.1| - 1.4e-05 25.2 0.3 0.0016 18.4 0.0 2.3 1 1 1 2 2 2 1 AAA domain AAA PF00004.24 gi|433591985|ref|YP_007281481.1| - 0.00016 21.8 0.1 0.12 12.5 0.0 2.3 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.1 gi|433591985|ref|YP_007281481.1| - 0.00025 21.8 1.4 0.0014 19.4 0.9 2.5 1 1 0 1 1 1 1 AAA domain AAA_5 PF07728.9 gi|433591985|ref|YP_007281481.1| - 0.00098 18.8 0.5 1.4 8.6 0.1 2.8 1 1 1 2 2 2 2 AAA domain (dynein-related subfamily) AAA_29 PF13555.1 gi|433591985|ref|YP_007281481.1| - 0.0011 18.4 0.0 0.0021 17.5 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|433591985|ref|YP_007281481.1| - 0.0031 17.8 3.9 0.051 13.8 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|433591985|ref|YP_007281481.1| - 0.0035 17.4 0.1 0.33 11.0 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|433591985|ref|YP_007281481.1| - 0.015 15.1 0.0 0.023 14.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|433591985|ref|YP_007281481.1| - 0.028 13.8 0.0 0.072 12.4 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.1 gi|433591985|ref|YP_007281481.1| - 0.051 13.8 1.4 0.18 12.1 1.0 2.4 1 1 0 1 1 1 0 AAA domain Rad17 PF03215.10 gi|433591985|ref|YP_007281481.1| - 0.091 11.4 0.0 0.13 10.9 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein DUF258 PF03193.11 gi|433591985|ref|YP_007281481.1| - 0.17 11.1 0.0 0.3 10.2 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_13 PF13166.1 gi|433591985|ref|YP_007281481.1| - 0.17 10.2 0.1 0.21 10.0 0.1 1.3 1 1 0 1 1 1 0 AAA domain DNA_pol_B PF00136.16 gi|433591986|ref|YP_007281482.1| - 9.8e-54 182.8 0.0 7.2e-33 114.0 0.0 2.7 2 1 0 2 2 2 2 DNA polymerase family B DNA_pol_B_exo1 PF03104.14 gi|433591986|ref|YP_007281482.1| - 4.5e-34 117.7 0.0 1.1e-33 116.4 0.0 1.7 1 1 1 2 2 2 1 DNA polymerase family B, exonuclease domain Hint_2 PF13403.1 gi|433591986|ref|YP_007281482.1| - 1.2e-08 34.9 0.0 6.6e-08 32.6 0.0 2.0 1 1 0 1 1 1 1 Hint domain Hint PF01079.15 gi|433591986|ref|YP_007281482.1| - 8.4e-07 28.4 0.0 1.5e-06 27.6 0.0 1.3 1 0 0 1 1 1 1 Hint module LAGLIDADG_3 PF14528.1 gi|433591986|ref|YP_007281482.1| - 6.9e-06 26.2 0.2 2.7e-05 24.3 0.0 2.0 2 0 0 2 2 2 1 LAGLIDADG-like domain PT-HINT PF07591.6 gi|433591986|ref|YP_007281482.1| - 0.00066 19.5 0.0 0.02 14.7 0.0 2.4 2 0 0 2 2 2 1 Pretoxin HINT domain Hom_end PF05204.9 gi|433591986|ref|YP_007281482.1| - 0.031 14.2 0.0 0.057 13.3 0.0 1.4 1 0 0 1 1 1 0 Homing endonuclease Hom_end_hint PF05203.11 gi|433591986|ref|YP_007281482.1| - 0.054 13.2 0.1 0.23 11.1 0.1 2.1 2 1 0 2 2 2 0 Hom_end-associated Hint DUF2910 PF11139.3 gi|433591988|ref|YP_007281484.1| - 0.00051 19.2 0.1 0.00062 18.9 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2910) TrbC PF04956.8 gi|433591988|ref|YP_007281484.1| - 0.023 14.7 2.1 0.043 13.8 1.5 1.4 1 0 0 1 1 1 0 TrbC/VIRB2 family AAA_23 PF13476.1 gi|433591990|ref|YP_007281486.1| - 1.5e-23 84.1 3.9 1.5e-23 84.1 2.7 6.0 1 1 2 3 3 2 1 AAA domain AAA_13 PF13166.1 gi|433591990|ref|YP_007281486.1| - 3.5e-14 52.2 61.6 3.2e-10 39.1 3.7 5.0 2 1 4 6 6 6 4 AAA domain AAA_15 PF13175.1 gi|433591990|ref|YP_007281486.1| - 6.2e-13 48.5 0.2 2.2e-05 23.7 0.0 3.0 2 2 0 2 2 2 2 AAA ATPase domain AAA_21 PF13304.1 gi|433591990|ref|YP_007281486.1| - 1.4e-12 48.1 1.1 1.7e-06 28.2 0.1 3.0 3 0 0 3 3 3 2 AAA domain SMC_N PF02463.14 gi|433591990|ref|YP_007281486.1| - 1.6e-07 30.7 63.7 2.6e-06 26.8 44.2 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|433591990|ref|YP_007281486.1| - 2.2e-07 30.2 0.0 5.3e-07 29.0 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain Spc7 PF08317.6 gi|433591990|ref|YP_007281486.1| - 1.2e-06 27.4 84.7 0.00013 20.7 13.7 5.2 2 2 2 5 5 5 4 Spc7 kinetochore protein IncA PF04156.9 gi|433591990|ref|YP_007281486.1| - 2.1e-06 27.5 109.8 0.00018 21.1 8.7 6.0 2 2 4 6 6 6 4 IncA protein AAA_27 PF13514.1 gi|433591990|ref|YP_007281486.1| - 1e-05 23.4 112.9 0.057 11.1 31.2 4.7 2 2 2 4 4 4 2 AAA domain SbcCD_C PF13558.1 gi|433591990|ref|YP_007281486.1| - 0.00022 21.0 0.0 0.00077 19.3 0.0 2.0 1 0 0 1 1 1 1 Putative exonuclease SbcCD, C subunit ABC_ATPase PF09818.4 gi|433591990|ref|YP_007281486.1| - 0.00026 19.6 6.7 0.0083 14.7 0.0 3.0 3 1 0 3 3 3 2 Predicted ATPase of the ABC class GAS PF13851.1 gi|433591990|ref|YP_007281486.1| - 0.001 18.3 5.9 0.001 18.3 4.1 5.0 3 1 0 4 4 4 2 Growth-arrest specific micro-tubule binding Laminin_I PF06008.9 gi|433591990|ref|YP_007281486.1| - 0.0011 18.3 15.5 0.003 16.8 5.6 6.7 3 2 3 6 6 5 3 Laminin Domain I DUF3584 PF12128.3 gi|433591990|ref|YP_007281486.1| - 0.0012 16.2 102.6 0.04 11.2 9.5 5.0 3 2 2 5 5 5 4 Protein of unknown function (DUF3584) Reo_sigmaC PF04582.7 gi|433591990|ref|YP_007281486.1| - 0.0013 18.0 22.1 0.2 10.8 0.6 5.3 2 2 3 6 6 6 3 Reovirus sigma C capsid protein ATG16 PF08614.6 gi|433591990|ref|YP_007281486.1| - 0.0021 17.9 10.6 0.0021 17.9 7.3 6.2 2 2 3 5 5 5 1 Autophagy protein 16 (ATG16) Atg14 PF10186.4 gi|433591990|ref|YP_007281486.1| - 0.0037 16.2 76.6 0.0044 16.0 7.7 6.1 2 2 4 6 6 6 2 UV radiation resistance protein and autophagy-related subunit 14 Laminin_II PF06009.7 gi|433591990|ref|YP_007281486.1| - 0.0038 16.9 49.3 0.89 9.3 5.4 6.9 3 2 2 6 6 6 3 Laminin Domain II TMF_DNA_bd PF12329.3 gi|433591990|ref|YP_007281486.1| - 0.0039 16.9 7.4 0.0039 16.9 5.2 10.4 5 4 4 10 10 10 4 TATA element modulatory factor 1 DNA binding AAA_16 PF13191.1 gi|433591990|ref|YP_007281486.1| - 0.01 15.8 0.0 0.01 15.8 0.0 4.9 2 1 1 4 4 2 0 AAA ATPase domain CENP-F_leu_zip PF10473.4 gi|433591990|ref|YP_007281486.1| - 0.015 15.1 107.2 0.64 9.8 8.2 6.7 1 1 5 6 6 6 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Viral_helicase1 PF01443.13 gi|433591990|ref|YP_007281486.1| - 0.032 13.7 0.0 0.075 12.5 0.0 1.6 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase ABC_tran PF00005.22 gi|433591990|ref|YP_007281486.1| - 0.039 14.2 0.0 0.039 14.2 0.0 5.1 2 2 1 4 4 3 0 ABC transporter NACHT PF05729.7 gi|433591990|ref|YP_007281486.1| - 0.054 13.1 0.0 0.15 11.7 0.0 1.8 1 0 0 1 1 1 0 NACHT domain AAA_19 PF13245.1 gi|433591990|ref|YP_007281486.1| - 0.077 12.7 0.0 0.25 11.1 0.0 1.9 1 0 0 1 1 1 0 Part of AAA domain AAA_33 PF13671.1 gi|433591990|ref|YP_007281486.1| - 0.09 12.6 0.0 0.09 12.6 0.0 4.0 4 2 0 4 4 2 0 AAA domain AAA_22 PF13401.1 gi|433591990|ref|YP_007281486.1| - 0.13 12.4 0.0 0.13 12.4 0.0 3.9 4 1 0 4 4 3 0 AAA domain Seryl_tRNA_N PF02403.17 gi|433591990|ref|YP_007281486.1| - 0.23 11.4 78.7 0.12 12.3 8.0 7.5 3 2 3 7 7 7 0 Seryl-tRNA synthetase N-terminal domain zinc_ribbon_2 PF13240.1 gi|433591990|ref|YP_007281486.1| - 0.3 10.6 0.8 0.61 9.6 0.6 1.5 1 0 0 1 1 1 0 zinc-ribbon domain DUF972 PF06156.8 gi|433591990|ref|YP_007281486.1| - 0.87 9.9 62.9 1.3 9.4 3.1 7.1 3 3 3 7 7 7 0 Protein of unknown function (DUF972) DUF3450 PF11932.3 gi|433591990|ref|YP_007281486.1| - 1.3 8.2 70.1 0.19 10.9 3.0 6.8 2 2 4 6 6 6 0 Protein of unknown function (DUF3450) APG6 PF04111.7 gi|433591990|ref|YP_007281486.1| - 1.6 7.7 104.0 1.1 8.1 7.5 6.1 2 2 4 6 6 6 0 Autophagy protein Apg6 TPR_MLP1_2 PF07926.7 gi|433591990|ref|YP_007281486.1| - 3.4 7.4 85.0 2.6 7.7 7.0 7.0 1 1 4 5 5 4 0 TPR/MLP1/MLP2-like protein Filament PF00038.16 gi|433591990|ref|YP_007281486.1| - 4.6 6.6 98.4 8.6 5.7 35.9 3.6 2 1 0 2 2 2 0 Intermediate filament protein Metallophos_2 PF12850.2 gi|433591991|ref|YP_007281487.1| - 6e-15 55.4 0.2 1.1e-14 54.6 0.1 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|433591991|ref|YP_007281487.1| - 2.8e-12 46.4 0.5 4.2e-12 45.8 0.3 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase HTH_24 PF13412.1 gi|433591993|ref|YP_007281489.1| - 8.6e-06 25.0 0.0 1.3e-05 24.5 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding GntR PF00392.16 gi|433591993|ref|YP_007281489.1| - 0.00063 19.1 0.0 0.0009 18.6 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family TFIIE_alpha PF02002.12 gi|433591993|ref|YP_007281489.1| - 0.0007 19.0 0.0 0.00085 18.8 0.0 1.1 1 0 0 1 1 1 1 TFIIE alpha subunit MarR_2 PF12802.2 gi|433591993|ref|YP_007281489.1| - 0.0032 17.0 0.0 0.0042 16.7 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.1 gi|433591993|ref|YP_007281489.1| - 0.0055 16.4 0.0 0.0068 16.1 0.0 1.2 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_27 PF13463.1 gi|433591993|ref|YP_007281489.1| - 0.067 13.5 0.0 0.09 13.1 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_28 PF13518.1 gi|433591993|ref|YP_007281489.1| - 0.067 13.2 0.0 0.082 12.9 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_12 PF08461.5 gi|433591993|ref|YP_007281489.1| - 0.094 12.4 0.1 0.23 11.1 0.1 1.9 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain MarR PF01047.17 gi|433591993|ref|YP_007281489.1| - 0.12 12.1 0.1 0.16 11.7 0.0 1.2 1 0 0 1 1 1 0 MarR family PI3K_C2 PF00792.19 gi|433591993|ref|YP_007281489.1| - 0.13 12.0 0.0 0.13 12.0 0.0 1.2 1 0 0 1 1 1 0 Phosphoinositide 3-kinase C2 AAA PF00004.24 gi|433591994|ref|YP_007281490.1| - 6.7e-45 152.5 2.0 7.7e-45 152.3 0.0 2.1 3 0 0 3 3 2 1 ATPase family associated with various cellular activities (AAA) AAA_2 PF07724.9 gi|433591994|ref|YP_007281490.1| - 6e-09 36.0 0.7 1.7e-08 34.5 0.0 2.2 2 0 0 2 2 1 1 AAA domain (Cdc48 subfamily) AAA_22 PF13401.1 gi|433591994|ref|YP_007281490.1| - 7.3e-07 29.3 3.3 2.2e-05 24.5 0.2 3.0 2 2 0 2 2 2 1 AAA domain RuvB_N PF05496.7 gi|433591994|ref|YP_007281490.1| - 7.8e-07 28.3 0.1 2e-06 27.0 0.0 1.7 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_5 PF07728.9 gi|433591994|ref|YP_007281490.1| - 1.3e-06 28.1 0.4 2e-05 24.3 0.2 2.6 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.1 gi|433591994|ref|YP_007281490.1| - 4.5e-06 26.7 4.0 0.00068 19.6 0.0 3.6 2 2 2 4 4 4 1 AAA ATPase domain AAA_17 PF13207.1 gi|433591994|ref|YP_007281490.1| - 4.1e-05 24.3 3.3 5e-05 24.1 0.1 2.6 2 2 0 2 2 2 1 AAA domain AAA_14 PF13173.1 gi|433591994|ref|YP_007281490.1| - 0.00032 20.6 0.2 0.0027 17.6 0.0 2.1 2 0 0 2 2 2 1 AAA domain DUF815 PF05673.8 gi|433591994|ref|YP_007281490.1| - 0.00037 19.5 0.0 0.00086 18.3 0.0 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_18 PF13238.1 gi|433591994|ref|YP_007281490.1| - 0.00049 20.3 1.6 0.0068 16.7 0.0 2.7 2 1 0 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|433591994|ref|YP_007281490.1| - 0.001 18.9 0.1 0.0081 16.0 0.0 2.4 1 1 0 2 2 2 1 AAA domain Mg_chelatase PF01078.16 gi|433591994|ref|YP_007281490.1| - 0.0011 18.1 0.2 0.0032 16.6 0.1 1.8 1 1 1 2 2 1 1 Magnesium chelatase, subunit ChlI IstB_IS21 PF01695.12 gi|433591994|ref|YP_007281490.1| - 0.0013 18.1 0.6 0.0031 16.9 0.0 1.8 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_19 PF13245.1 gi|433591994|ref|YP_007281490.1| - 0.0015 18.1 0.2 0.0042 16.8 0.2 1.7 1 0 0 1 1 1 1 Part of AAA domain NACHT PF05729.7 gi|433591994|ref|YP_007281490.1| - 0.0018 17.9 0.1 0.048 13.3 0.0 2.4 1 1 0 2 2 2 1 NACHT domain AAA_24 PF13479.1 gi|433591994|ref|YP_007281490.1| - 0.0018 17.8 0.1 0.0061 16.1 0.0 2.0 2 0 0 2 2 2 1 AAA domain GrpE PF01025.14 gi|433591994|ref|YP_007281490.1| - 0.002 17.6 8.6 0.002 17.6 6.0 2.5 3 0 0 3 3 2 1 GrpE Sigma54_activat PF00158.21 gi|433591994|ref|YP_007281490.1| - 0.0022 17.5 0.1 0.05 13.0 0.0 2.6 2 1 0 2 2 2 1 Sigma-54 interaction domain TIP49 PF06068.8 gi|433591994|ref|YP_007281490.1| - 0.0022 16.7 2.2 0.0037 16.0 0.0 2.2 2 1 0 2 2 2 1 TIP49 C-terminus AAA_25 PF13481.1 gi|433591994|ref|YP_007281490.1| - 0.0027 17.1 6.5 0.033 13.5 0.1 3.2 2 1 1 3 3 3 1 AAA domain RNA_helicase PF00910.17 gi|433591994|ref|YP_007281490.1| - 0.0041 17.2 0.0 0.011 15.8 0.0 1.8 1 0 0 1 1 1 1 RNA helicase ATG16 PF08614.6 gi|433591994|ref|YP_007281490.1| - 0.0054 16.5 10.6 0.0054 16.5 7.4 3.0 2 1 0 3 3 3 1 Autophagy protein 16 (ATG16) Zeta_toxin PF06414.7 gi|433591994|ref|YP_007281490.1| - 0.0078 15.3 0.5 0.027 13.5 0.0 2.1 2 0 0 2 2 2 1 Zeta toxin ADIP PF11559.3 gi|433591994|ref|YP_007281490.1| - 0.0083 16.0 6.4 0.021 14.7 4.5 1.6 1 0 0 1 1 1 1 Afadin- and alpha -actinin-Binding Creatininase PF02633.9 gi|433591994|ref|YP_007281490.1| - 0.0091 15.0 0.0 0.016 14.2 0.0 1.3 1 0 0 1 1 1 1 Creatinine amidohydrolase AAA_28 PF13521.1 gi|433591994|ref|YP_007281490.1| - 0.0097 15.8 0.0 0.0097 15.8 0.0 2.4 2 2 0 2 2 1 1 AAA domain AAA_3 PF07726.6 gi|433591994|ref|YP_007281490.1| - 0.012 15.1 0.2 0.049 13.2 0.0 2.2 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) KaiC PF06745.8 gi|433591994|ref|YP_007281490.1| - 0.013 14.6 6.6 0.29 10.1 0.0 3.8 2 1 0 3 3 3 0 KaiC Arch_ATPase PF01637.13 gi|433591994|ref|YP_007281490.1| - 0.022 14.4 2.1 0.15 11.6 0.0 2.8 2 1 0 2 2 2 0 Archaeal ATPase Parvo_NS1 PF01057.12 gi|433591994|ref|YP_007281490.1| - 0.025 13.4 0.0 0.049 12.4 0.0 1.4 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 Sigma54_activ_2 PF14532.1 gi|433591994|ref|YP_007281490.1| - 0.03 14.3 1.5 0.055 13.5 0.0 2.3 3 1 0 3 3 1 0 Sigma-54 interaction domain bZIP_1 PF00170.16 gi|433591994|ref|YP_007281490.1| - 0.032 14.1 13.3 0.3 11.0 3.9 2.8 1 1 1 2 2 2 0 bZIP transcription factor AAA_23 PF13476.1 gi|433591994|ref|YP_007281490.1| - 0.032 14.5 8.7 2.8 8.2 0.0 2.7 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.17 gi|433591994|ref|YP_007281490.1| - 0.033 13.0 0.0 0.099 11.4 0.0 1.8 1 0 0 1 1 1 0 NB-ARC domain CPT PF07931.7 gi|433591994|ref|YP_007281490.1| - 0.039 13.5 0.0 0.093 12.3 0.0 1.7 1 0 0 1 1 1 0 Chloramphenicol phosphotransferase-like protein Atg14 PF10186.4 gi|433591994|ref|YP_007281490.1| - 0.047 12.6 2.0 0.076 11.9 1.4 1.3 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 Fmp27_WPPW PF10359.4 gi|433591994|ref|YP_007281490.1| - 0.12 10.8 6.3 0.19 10.0 4.4 1.4 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain ABC_tran PF00005.22 gi|433591994|ref|YP_007281490.1| - 0.19 12.0 4.1 0.31 11.3 0.0 2.7 2 1 0 2 2 1 0 ABC transporter NTPase_1 PF03266.10 gi|433591994|ref|YP_007281490.1| - 0.21 11.2 6.2 0.44 10.2 0.1 3.5 3 1 1 4 4 4 0 NTPase AAA_13 PF13166.1 gi|433591994|ref|YP_007281490.1| - 0.27 9.6 6.8 8.2 4.7 4.7 2.2 2 0 0 2 2 2 0 AAA domain DUF3987 PF13148.1 gi|433591994|ref|YP_007281490.1| - 0.32 9.5 8.4 0.99 7.8 4.9 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3987) IncA PF04156.9 gi|433591994|ref|YP_007281490.1| - 0.36 10.4 16.2 2.7 7.5 9.4 2.3 1 1 1 2 2 2 0 IncA protein Viral_P18 PF04521.8 gi|433591994|ref|YP_007281490.1| - 0.64 9.4 3.5 1.5 8.2 2.5 1.7 1 0 0 1 1 1 0 ssRNA positive strand viral 18kD cysteine rich protein AAA_11 PF13086.1 gi|433591994|ref|YP_007281490.1| - 0.92 9.0 7.4 0.53 9.8 0.0 2.4 1 1 1 2 2 2 0 AAA domain V_ATPase_I PF01496.14 gi|433591994|ref|YP_007281490.1| - 3.7 5.2 4.9 5.2 4.7 3.4 1.3 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family DUF972 PF06156.8 gi|433591994|ref|YP_007281490.1| - 6.9 7.0 12.3 11 6.4 5.9 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF972) polyprenyl_synt PF00348.12 gi|433591995|ref|YP_007281491.1| - 1.9e-42 144.9 0.0 2.4e-42 144.5 0.0 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase Peptidase_M28 PF04389.12 gi|433591996|ref|YP_007281492.1| - 1.9e-30 105.9 0.1 2.9e-30 105.3 0.1 1.3 1 0 0 1 1 1 1 Peptidase family M28 PA PF02225.17 gi|433591996|ref|YP_007281492.1| - 4.5e-09 35.9 0.0 8.4e-09 35.0 0.0 1.5 1 0 0 1 1 1 1 PA domain Peptidase_M20 PF01546.23 gi|433591996|ref|YP_007281492.1| - 5e-06 26.1 0.5 7.6e-06 25.5 0.3 1.3 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M42 PF05343.9 gi|433591996|ref|YP_007281492.1| - 1.4e-05 24.0 0.5 2.7e-05 23.1 0.3 1.4 1 1 0 1 1 1 1 M42 glutamyl aminopeptidase NAD_kinase PF01513.16 gi|433591997|ref|YP_007281493.1| - 1.4e-19 69.9 0.0 2e-19 69.4 0.0 1.2 1 0 0 1 1 1 1 ATP-NAD kinase HhH-GPD PF00730.20 gi|433591999|ref|YP_007281495.1| - 6e-21 74.7 0.0 8.2e-21 74.3 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.18 gi|433591999|ref|YP_007281495.1| - 4.7e-09 35.4 0.0 1e-08 34.3 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix motif EndIII_4Fe-2S PF10576.4 gi|433591999|ref|YP_007281495.1| - 3.2e-06 27.0 1.7 7.1e-06 25.9 1.2 1.6 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III HHH_5 PF14520.1 gi|433591999|ref|YP_007281495.1| - 0.08 13.1 0.1 0.25 11.5 0.0 1.8 2 0 0 2 2 2 0 Helix-hairpin-helix domain HHH_8 PF14716.1 gi|433591999|ref|YP_007281495.1| - 0.11 12.6 0.0 0.23 11.6 0.0 1.5 1 0 0 1 1 1 0 Helix-hairpin-helix domain Fer4_6 PF12837.2 gi|433591999|ref|YP_007281495.1| - 2 8.4 5.3 2.2 8.2 2.6 1.9 2 0 0 2 2 2 0 4Fe-4S binding domain GHMP_kinases_N PF00288.21 gi|433592000|ref|YP_007281496.1| - 4e-06 26.7 5.7 1.8e-05 24.7 4.1 1.9 1 1 1 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|433592000|ref|YP_007281496.1| - 0.0036 17.4 0.0 0.012 15.7 0.0 1.9 2 0 0 2 2 2 1 GHMP kinases C terminal Phage_AlpA PF05930.7 gi|433592000|ref|YP_007281496.1| - 0.091 12.5 0.0 0.18 11.5 0.0 1.4 1 0 0 1 1 1 0 Prophage CP4-57 regulatory protein (AlpA) HTH_24 PF13412.1 gi|433592001|ref|YP_007281497.1| - 5.5e-11 41.6 0.1 9e-11 40.9 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|433592001|ref|YP_007281497.1| - 2.8e-08 33.1 2.3 5.4e-08 32.2 1.6 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_20 PF12840.2 gi|433592001|ref|YP_007281497.1| - 8.5e-05 22.2 0.0 0.00018 21.2 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|433592001|ref|YP_007281497.1| - 0.0017 17.9 0.0 0.0037 16.9 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|433592001|ref|YP_007281497.1| - 0.01 15.3 0.0 0.02 14.4 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_27 PF13463.1 gi|433592001|ref|YP_007281497.1| - 0.018 15.3 0.0 0.045 14.0 0.0 1.7 1 0 0 1 1 1 0 Winged helix DNA-binding domain TrmB PF01978.14 gi|433592001|ref|YP_007281497.1| - 0.028 14.1 0.0 1.9 8.2 0.0 2.3 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB TraF_2 PF13729.1 gi|433592001|ref|YP_007281497.1| - 0.035 12.9 0.9 0.066 12.0 0.6 1.4 1 0 0 1 1 1 0 F plasmid transfer operon, TraF, protein MarR PF01047.17 gi|433592001|ref|YP_007281497.1| - 0.043 13.5 0.0 0.089 12.5 0.0 1.5 1 0 0 1 1 1 0 MarR family HTH_11 PF08279.7 gi|433592001|ref|YP_007281497.1| - 0.092 12.4 0.0 0.49 10.0 0.0 2.0 2 0 0 2 2 2 0 HTH domain Penicillinase_R PF03965.11 gi|433592001|ref|YP_007281497.1| - 0.13 12.4 0.0 0.33 11.0 0.0 1.6 2 0 0 2 2 2 0 Penicillinase repressor DCD PF06559.6 gi|433592002|ref|YP_007281498.1| - 0.034 12.5 0.0 0.037 12.4 0.0 1.0 1 0 0 1 1 1 0 2'-deoxycytidine 5'-triphosphate deaminase (DCD) HTH_31 PF13560.1 gi|433592002|ref|YP_007281498.1| - 0.045 13.9 0.7 0.07 13.3 0.1 1.6 2 0 0 2 2 2 0 Helix-turn-helix domain XPG_I PF00867.13 gi|433592003|ref|YP_007281499.1| - 1.7e-23 82.4 0.0 3e-23 81.6 0.0 1.4 1 0 0 1 1 1 1 XPG I-region XPG_N PF00752.12 gi|433592003|ref|YP_007281499.1| - 6.8e-11 42.3 0.0 1.2e-10 41.5 0.0 1.4 1 0 0 1 1 1 1 XPG N-terminal domain 5_3_exonuc PF01367.15 gi|433592003|ref|YP_007281499.1| - 0.0001 22.4 0.0 0.00021 21.4 0.0 1.5 1 0 0 1 1 1 1 5'-3' exonuclease, C-terminal SAM fold PQQ_2 PF13360.1 gi|433592004|ref|YP_007281500.1| - 8.6e-24 84.3 29.1 1.5e-12 47.4 4.1 2.5 1 1 2 3 3 3 3 PQQ-like domain PQQ_3 PF13570.1 gi|433592004|ref|YP_007281500.1| - 7.8e-06 25.9 40.2 0.00083 19.5 0.2 8.2 8 1 0 8 8 8 6 PQQ-like domain PQQ PF01011.16 gi|433592004|ref|YP_007281500.1| - 1.8e-05 23.9 10.2 0.45 10.1 0.0 6.8 6 1 1 7 7 7 4 PQQ enzyme repeat Acetyltransf_1 PF00583.19 gi|433592006|ref|YP_007281502.1| - 1.4e-09 37.8 0.0 2e-09 37.3 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|433592006|ref|YP_007281502.1| - 0.00081 19.4 0.0 0.0013 18.9 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|433592006|ref|YP_007281502.1| - 0.0032 17.3 0.0 0.0051 16.6 0.0 1.4 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase YwhD PF08741.5 gi|433592006|ref|YP_007281502.1| - 0.0053 16.1 0.0 0.0075 15.6 0.0 1.1 1 0 0 1 1 1 1 YwhD family Acetyltransf_8 PF13523.1 gi|433592006|ref|YP_007281502.1| - 0.01 15.7 0.3 0.039 13.8 0.0 1.8 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain TPR_16 PF13432.1 gi|433592006|ref|YP_007281502.1| - 0.06 14.0 2.4 8.5 7.1 0.2 3.0 3 0 0 3 3 3 0 Tetratricopeptide repeat HTH_20 PF12840.2 gi|433592007|ref|YP_007281503.1| - 0.021 14.6 0.2 0.17 11.7 0.1 2.1 1 1 0 1 1 1 0 Helix-turn-helix domain TrmB PF01978.14 gi|433592008|ref|YP_007281504.1| - 6e-20 70.7 0.0 2.2e-19 68.9 0.0 1.9 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|433592008|ref|YP_007281504.1| - 0.00047 19.8 0.1 0.0011 18.6 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|433592008|ref|YP_007281504.1| - 0.0021 17.6 0.6 0.011 15.4 0.1 2.2 2 0 0 2 2 2 1 MarR family Regulator_TrmB PF11495.3 gi|433592008|ref|YP_007281504.1| - 0.0035 16.3 0.0 0.0061 15.5 0.0 1.5 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB GntR PF00392.16 gi|433592008|ref|YP_007281504.1| - 0.0043 16.4 0.1 0.023 14.1 0.0 2.1 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_IclR PF09339.5 gi|433592008|ref|YP_007281504.1| - 0.0074 15.8 0.4 0.018 14.6 0.0 1.8 2 0 0 2 2 2 1 IclR helix-turn-helix domain E2F_TDP PF02319.15 gi|433592008|ref|YP_007281504.1| - 0.041 13.4 0.0 0.11 12.1 0.0 1.7 1 1 0 1 1 1 0 E2F/DP family winged-helix DNA-binding domain PadR PF03551.9 gi|433592008|ref|YP_007281504.1| - 0.077 12.7 0.0 0.32 10.7 0.0 2.0 2 0 0 2 2 2 0 Transcriptional regulator PadR-like family DUF2250 PF10007.4 gi|433592008|ref|YP_007281504.1| - 0.12 12.2 0.0 0.27 11.1 0.0 1.7 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) CSD PF00313.17 gi|433592010|ref|YP_007281506.1| - 2.6e-19 68.7 0.1 2.9e-19 68.6 0.1 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain S1-like PF14444.1 gi|433592010|ref|YP_007281506.1| - 0.015 15.0 0.6 0.021 14.5 0.4 1.4 1 1 0 1 1 1 0 S1-like OB_RNB PF08206.6 gi|433592010|ref|YP_007281506.1| - 0.017 14.5 2.6 0.022 14.2 1.8 1.3 1 0 0 1 1 1 0 Ribonuclease B OB domain PSII_BNR PF14870.1 gi|433592011|ref|YP_007281507.1| - 0.00019 20.5 8.1 0.18 10.7 0.3 4.2 1 1 3 4 4 4 4 Photosynthesis system II assembly factor YCF48 TAT_signal PF10518.4 gi|433592011|ref|YP_007281507.1| - 0.24 11.5 7.2 0.81 9.8 5.0 2.0 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence BNR PF02012.15 gi|433592011|ref|YP_007281507.1| - 4.7 7.4 9.6 10 6.4 0.2 4.3 5 0 0 5 5 5 0 BNR/Asp-box repeat Methyltransf_11 PF08241.7 gi|433592012|ref|YP_007281508.1| - 1.7e-18 66.9 0.1 2.7e-18 66.2 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|433592012|ref|YP_007281508.1| - 1.9e-12 47.0 0.0 2.7e-12 46.5 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|433592012|ref|YP_007281508.1| - 3.4e-12 46.6 0.1 7.4e-12 45.5 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|433592012|ref|YP_007281508.1| - 2.2e-11 44.2 0.3 4.2e-11 43.4 0.2 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|433592012|ref|YP_007281508.1| - 4.4e-11 43.1 0.1 8.7e-11 42.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|433592012|ref|YP_007281508.1| - 1.1e-08 34.5 0.0 1.3e-08 34.2 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.1 gi|433592012|ref|YP_007281508.1| - 9e-08 31.9 0.0 1.1e-07 31.6 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|433592012|ref|YP_007281508.1| - 2.2e-05 24.4 1.3 5e-05 23.3 0.9 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_8 PF05148.10 gi|433592012|ref|YP_007281508.1| - 8.8e-05 22.2 0.0 0.0005 19.7 0.0 1.9 1 1 0 1 1 1 1 Hypothetical methyltransferase NodS PF05401.6 gi|433592012|ref|YP_007281508.1| - 0.002 17.5 0.0 0.0038 16.6 0.0 1.4 2 0 0 2 2 2 1 Nodulation protein S (NodS) MarR_2 PF12802.2 gi|433592013|ref|YP_007281509.1| - 6.8e-05 22.4 0.0 9.3e-05 22.0 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|433592013|ref|YP_007281509.1| - 0.00013 22.2 0.0 0.0002 21.5 0.0 1.4 1 1 0 1 1 1 1 Winged helix DNA-binding domain Fe_dep_repress PF01325.14 gi|433592013|ref|YP_007281509.1| - 0.0024 17.7 0.4 0.015 15.2 0.0 2.0 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_24 PF13412.1 gi|433592013|ref|YP_007281509.1| - 0.0044 16.3 0.0 0.0074 15.6 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_45 PF14947.1 gi|433592013|ref|YP_007281509.1| - 0.0078 16.0 0.0 0.011 15.5 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_12 PF08461.5 gi|433592013|ref|YP_007281509.1| - 0.015 15.0 0.1 0.019 14.6 0.0 1.2 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain HTH_IclR PF09339.5 gi|433592013|ref|YP_007281509.1| - 0.017 14.6 0.0 0.024 14.2 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain MarR PF01047.17 gi|433592013|ref|YP_007281509.1| - 0.028 14.1 0.0 0.043 13.5 0.0 1.3 1 0 0 1 1 1 0 MarR family HTH_Crp_2 PF13545.1 gi|433592013|ref|YP_007281509.1| - 0.034 13.9 0.0 0.057 13.2 0.0 1.3 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_20 PF12840.2 gi|433592013|ref|YP_007281509.1| - 0.058 13.2 0.0 0.077 12.8 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain Mrr_N PF14338.1 gi|433592013|ref|YP_007281509.1| - 0.062 13.4 0.0 0.096 12.7 0.0 1.5 1 1 0 1 1 1 0 Mrr N-terminal domain Colicin_V PF02674.11 gi|433592014|ref|YP_007281510.1| - 0.0029 17.4 0.4 0.0045 16.8 0.3 1.2 1 0 0 1 1 1 1 Colicin V production protein Terpene_synth_C PF03936.11 gi|433592015|ref|YP_007281511.1| - 0.089 12.0 0.1 0.14 11.3 0.1 1.2 1 0 0 1 1 1 0 Terpene synthase family, metal binding domain TCR_zetazeta PF11628.3 gi|433592017|ref|YP_007281513.1| - 0.1 12.0 0.4 0.21 11.0 0.3 1.5 1 1 0 1 1 1 0 T-cell surface glycoprotein CD3 zeta chain Phage_integrase PF00589.17 gi|433592018|ref|YP_007281514.1| - 3.2e-15 56.2 0.0 4.3e-15 55.8 0.0 1.1 1 0 0 1 1 1 1 Phage integrase family Integrase_1 PF12835.2 gi|433592018|ref|YP_007281514.1| - 0.0037 17.0 0.0 0.0085 15.8 0.0 1.5 1 1 0 1 1 1 1 Integrase HTH_23 PF13384.1 gi|433592018|ref|YP_007281514.1| - 0.042 13.5 0.3 0.28 10.8 0.0 2.2 2 0 0 2 2 2 0 Homeodomain-like domain BolA PF01722.13 gi|433592019|ref|YP_007281515.1| - 0.13 12.2 0.0 0.16 11.9 0.0 1.2 1 0 0 1 1 1 0 BolA-like protein Fic PF02661.13 gi|433592020|ref|YP_007281516.1| - 2.7e-09 37.5 0.5 4.8e-08 33.5 0.1 2.4 2 1 0 2 2 2 1 Fic/DOC family Fic PF02661.13 gi|433592023|ref|YP_007281519.1| - 2.6e-17 63.2 0.0 7.9e-17 61.7 0.0 1.8 2 0 0 2 2 2 1 Fic/DOC family Fic_N PF13784.1 gi|433592023|ref|YP_007281519.1| - 3.9e-12 45.8 0.0 8.2e-12 44.8 0.0 1.6 1 0 0 1 1 1 1 Fic/DOC family N-terminal TrmB PF01978.14 gi|433592023|ref|YP_007281519.1| - 0.00014 21.5 0.3 0.0006 19.4 0.0 2.1 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.7 gi|433592023|ref|YP_007281519.1| - 0.0017 17.9 0.0 0.0048 16.5 0.0 1.7 1 0 0 1 1 1 1 HTH domain GntR PF00392.16 gi|433592023|ref|YP_007281519.1| - 0.006 15.9 0.0 0.031 13.6 0.0 2.1 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family DUF4172 PF13776.1 gi|433592023|ref|YP_007281519.1| - 0.025 14.6 0.0 0.13 12.3 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4172) TaqI_C PF12950.2 gi|433592025|ref|YP_007281521.1| - 2.4e-15 56.3 0.0 3.5e-15 55.7 0.0 1.3 1 0 0 1 1 1 1 TaqI-like C-terminal specificity domain Methyltransf_26 PF13659.1 gi|433592025|ref|YP_007281521.1| - 2.4e-09 37.2 12.4 2.4e-09 37.2 8.6 2.7 2 1 0 2 2 2 1 Methyltransferase domain N6_Mtase PF02384.11 gi|433592025|ref|YP_007281521.1| - 1.7e-07 30.6 0.0 0.016 14.3 0.0 2.5 2 1 0 2 2 2 2 N-6 DNA Methylase Eco57I PF07669.6 gi|433592025|ref|YP_007281521.1| - 1.5e-06 28.4 0.0 2.9e-06 27.5 0.0 1.3 1 0 0 1 1 1 1 Eco57I restriction-modification methylase Mu-transpos_C PF09299.6 gi|433592025|ref|YP_007281521.1| - 0.013 15.3 0.2 0.19 11.6 0.0 2.9 2 1 0 2 2 2 0 Mu transposase, C-terminal adh_short PF00106.20 gi|433592026|ref|YP_007281522.1| - 2e-30 105.9 0.1 3e-30 105.3 0.1 1.3 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|433592026|ref|YP_007281522.1| - 1.8e-13 50.8 0.0 2.4e-13 50.4 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|433592026|ref|YP_007281522.1| - 6.9e-10 38.8 0.1 1e-09 38.3 0.0 1.2 1 0 0 1 1 1 1 KR domain NAD_binding_10 PF13460.1 gi|433592026|ref|YP_007281522.1| - 2.3e-05 24.4 0.3 4.5e-05 23.5 0.2 1.5 1 0 0 1 1 1 1 NADH(P)-binding NmrA PF05368.8 gi|433592026|ref|YP_007281522.1| - 0.00025 20.3 0.0 0.00038 19.8 0.0 1.2 1 0 0 1 1 1 1 NmrA-like family DUF1776 PF08643.5 gi|433592026|ref|YP_007281522.1| - 0.008 15.3 0.0 0.013 14.6 0.0 1.2 1 0 0 1 1 1 1 Fungal family of unknown function (DUF1776) Epimerase PF01370.16 gi|433592026|ref|YP_007281522.1| - 0.037 13.4 0.0 0.054 12.9 0.0 1.4 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family Eno-Rase_NADH_b PF12242.3 gi|433592026|ref|YP_007281522.1| - 0.059 13.1 0.0 0.13 12.0 0.0 1.5 1 0 0 1 1 1 0 NAD(P)H binding domain of trans-2-enoyl-CoA reductase DNA_pol_lambd_f PF10391.4 gi|433592026|ref|YP_007281522.1| - 0.15 11.5 0.5 2.3 7.8 0.0 2.3 2 0 0 2 2 2 0 Fingers domain of DNA polymerase lambda tRNA-synt_1 PF00133.17 gi|433592028|ref|YP_007281524.1| - 9e-62 208.9 0.1 4.5e-39 133.9 0.9 4.8 1 1 1 2 2 2 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1_2 PF13603.1 gi|433592028|ref|YP_007281524.1| - 4.2e-54 182.6 0.0 6.6e-54 182.0 0.0 1.3 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1g PF09334.6 gi|433592028|ref|YP_007281524.1| - 3.3e-31 108.3 0.0 3e-22 78.8 0.0 4.7 4 1 0 4 4 4 2 tRNA synthetases class I (M) Anticodon_1 PF08264.8 gi|433592028|ref|YP_007281524.1| - 3.7e-15 55.9 0.0 6.6e-15 55.1 0.0 1.4 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1f PF01921.13 gi|433592028|ref|YP_007281524.1| - 0.0023 16.6 0.0 1.4 7.5 0.0 3.2 3 0 0 3 3 3 1 tRNA synthetases class I (K) tRNA-synt_1e PF01406.14 gi|433592028|ref|YP_007281524.1| - 0.02 14.0 0.0 1.7 7.6 0.0 2.2 2 0 0 2 2 2 0 tRNA synthetases class I (C) catalytic domain DZR PF12773.2 gi|433592028|ref|YP_007281524.1| - 0.041 13.6 5.5 1.1 9.1 0.2 2.6 2 1 0 2 2 2 0 Double zinc ribbon Zn-ribbon_8 PF09723.5 gi|433592028|ref|YP_007281524.1| - 0.33 10.9 8.9 1.7 8.6 0.2 3.0 3 0 0 3 3 3 0 Zinc ribbon domain IBR PF01485.16 gi|433592028|ref|YP_007281524.1| - 0.48 10.3 3.3 0.91 9.4 0.1 2.6 2 1 0 2 2 2 0 IBR domain zf-ribbon_3 PF13248.1 gi|433592028|ref|YP_007281524.1| - 1.1 8.5 3.7 2.4 7.4 0.1 2.8 2 1 0 2 2 2 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|433592028|ref|YP_007281524.1| - 4.1 6.8 12.5 6.7 6.1 0.1 3.9 3 1 1 4 4 4 0 TFIIB zinc-binding DUF420 PF04238.7 gi|433592030|ref|YP_007281526.1| - 5.1e-39 133.2 10.2 5.1e-39 133.2 7.1 1.4 2 0 0 2 2 2 1 Protein of unknown function (DUF420) DUF1240 PF06836.7 gi|433592030|ref|YP_007281526.1| - 0.37 11.0 4.3 0.13 12.4 0.6 1.9 2 1 0 2 2 2 0 Protein of unknown function (DUF1240) DUF2306 PF10067.4 gi|433592030|ref|YP_007281526.1| - 1.1 9.3 12.1 0.033 14.3 1.1 2.7 1 1 0 2 2 2 0 Predicted membrane protein (DUF2306) Cytochrom_B561 PF03188.11 gi|433592030|ref|YP_007281526.1| - 1.3 8.8 12.7 3.6 7.4 5.9 2.7 1 1 0 2 2 2 0 Eukaryotic cytochrome b561 PalH PF08733.5 gi|433592030|ref|YP_007281526.1| - 1.5 7.5 6.7 0.83 8.4 0.2 2.2 2 1 0 2 2 2 0 PalH/RIM21 7tm_7 PF08395.7 gi|433592030|ref|YP_007281526.1| - 1.6 7.7 8.1 2.4 7.0 0.3 2.3 2 0 0 2 2 2 0 7tm Chemosensory receptor DUF3397 PF11877.3 gi|433592030|ref|YP_007281526.1| - 2.9 7.9 12.1 0.035 14.0 2.6 2.1 2 1 0 2 2 2 0 Protein of unknown function (DUF3397) Vma12 PF11712.3 gi|433592030|ref|YP_007281526.1| - 4.4 6.9 6.9 17 5.0 1.3 2.3 2 0 0 2 2 2 0 Endoplasmic reticulum-based factor for assembly of V-ATPase Aldolase_2 PF10120.4 gi|433592031|ref|YP_007281527.1| - 1.1e-44 151.7 0.0 2e-44 150.9 0.0 1.4 1 0 0 1 1 1 1 Putative aldolase HTH_3 PF01381.17 gi|433592031|ref|YP_007281527.1| - 3.7e-07 29.8 0.0 7.8e-07 28.8 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.1 gi|433592031|ref|YP_007281527.1| - 6.6e-05 23.0 1.0 0.00019 21.5 0.1 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_37 PF13744.1 gi|433592031|ref|YP_007281527.1| - 0.0003 20.5 0.0 0.00054 19.7 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4 PF04545.11 gi|433592031|ref|YP_007281527.1| - 0.00036 19.7 0.7 0.00076 18.7 0.0 1.9 2 0 0 2 2 2 1 Sigma-70, region 4 MarR_2 PF12802.2 gi|433592031|ref|YP_007281527.1| - 0.00038 20.0 0.5 0.003 17.1 0.0 2.5 2 1 0 2 2 2 1 MarR family HTH_23 PF13384.1 gi|433592031|ref|YP_007281527.1| - 0.0008 18.9 0.1 0.0037 16.8 0.0 2.0 2 0 0 2 2 2 1 Homeodomain-like domain HTH_24 PF13412.1 gi|433592031|ref|YP_007281527.1| - 0.0018 17.6 0.0 0.0043 16.4 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_19 PF12844.2 gi|433592031|ref|YP_007281527.1| - 0.0031 17.5 0.0 0.0057 16.6 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.1 gi|433592031|ref|YP_007281527.1| - 0.0042 17.2 0.0 0.0079 16.3 0.0 1.4 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_38 PF13936.1 gi|433592031|ref|YP_007281527.1| - 0.0083 15.6 0.0 0.016 14.7 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain KorB PF08535.5 gi|433592031|ref|YP_007281527.1| - 0.04 14.0 0.1 0.67 10.1 0.0 2.6 2 1 0 2 2 2 0 KorB domain P22_Cro PF14549.1 gi|433592031|ref|YP_007281527.1| - 0.044 13.5 0.1 0.12 12.0 0.1 1.7 1 0 0 1 1 1 0 DNA-binding transcriptional regulator Cro Sigma70_r4_2 PF08281.7 gi|433592031|ref|YP_007281527.1| - 0.045 13.2 0.0 0.12 11.8 0.0 1.7 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_IclR PF09339.5 gi|433592031|ref|YP_007281527.1| - 0.066 12.8 0.3 0.81 9.3 0.0 2.5 2 0 0 2 2 2 0 IclR helix-turn-helix domain HTH_5 PF01022.15 gi|433592031|ref|YP_007281527.1| - 0.084 12.5 0.0 0.22 11.1 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Methyltransf_23 PF13489.1 gi|433592032|ref|YP_007281528.1| - 1.3e-13 51.0 0.0 1.5e-13 50.7 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|433592032|ref|YP_007281528.1| - 5.6e-12 45.4 0.0 1.1e-11 44.5 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|433592032|ref|YP_007281528.1| - 4.5e-11 43.3 0.1 7.6e-11 42.5 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|433592032|ref|YP_007281528.1| - 2.3e-10 40.7 0.0 1.3e-08 35.2 0.0 2.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|433592032|ref|YP_007281528.1| - 2.4e-09 37.5 0.0 4.2e-09 36.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|433592032|ref|YP_007281528.1| - 7.2e-07 28.9 0.0 1.1e-06 28.3 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_26 PF13659.1 gi|433592032|ref|YP_007281528.1| - 7.3e-06 25.9 3.6 4.1e-05 23.5 2.5 2.1 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|433592032|ref|YP_007281528.1| - 2e-05 24.8 0.0 3.5e-05 24.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_4 PF02390.12 gi|433592032|ref|YP_007281528.1| - 8.4e-05 21.6 0.0 0.00012 21.2 0.0 1.2 1 0 0 1 1 1 1 Putative methyltransferase FtsJ PF01728.14 gi|433592032|ref|YP_007281528.1| - 0.0002 21.4 0.0 0.00024 21.1 0.0 1.2 1 0 0 1 1 1 1 FtsJ-like methyltransferase Ubie_methyltran PF01209.13 gi|433592032|ref|YP_007281528.1| - 0.00052 19.1 0.0 0.00078 18.6 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family RrnaAD PF00398.15 gi|433592032|ref|YP_007281528.1| - 0.0039 16.2 0.0 0.0056 15.7 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Fibrillarin PF01269.12 gi|433592032|ref|YP_007281528.1| - 0.011 14.6 0.0 0.017 14.0 0.0 1.2 1 0 0 1 1 1 0 Fibrillarin GCD14 PF08704.5 gi|433592032|ref|YP_007281528.1| - 0.012 15.1 0.0 0.018 14.5 0.0 1.1 1 0 0 1 1 1 0 tRNA methyltransferase complex GCD14 subunit CMAS PF02353.15 gi|433592032|ref|YP_007281528.1| - 0.053 12.5 0.0 0.073 12.1 0.0 1.1 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase DUF4131 PF13567.1 gi|433592033|ref|YP_007281529.1| - 0.5 9.7 6.0 1.4 8.3 4.2 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4131) DUF1772 PF08592.6 gi|433592033|ref|YP_007281529.1| - 0.92 9.2 4.2 1 9.0 0.2 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF1772) Arylsulfotran_2 PF14269.1 gi|433592034|ref|YP_007281530.1| - 3.4e-10 39.5 2.0 1.6e-07 30.8 1.2 3.1 2 1 0 2 2 2 1 Arylsulfotransferase (ASST) Arylsulfotrans PF05935.6 gi|433592034|ref|YP_007281530.1| - 5.7e-09 34.9 6.5 1.7e-07 30.1 2.9 2.5 1 1 2 3 3 3 2 Arylsulfotransferase (ASST) NHL PF01436.16 gi|433592034|ref|YP_007281530.1| - 0.0067 16.3 3.9 0.25 11.3 0.0 4.3 3 1 0 3 3 3 1 NHL repeat MSC PF09402.5 gi|433592034|ref|YP_007281530.1| - 0.5 9.0 1.6 0.73 8.4 1.1 1.2 1 0 0 1 1 1 0 Man1-Src1p-C-terminal domain 4HBT_2 PF13279.1 gi|433592035|ref|YP_007281531.1| - 1.8e-19 70.3 0.0 2.3e-19 70.0 0.0 1.0 1 0 0 1 1 1 1 Thioesterase-like superfamily 4HBT PF03061.17 gi|433592035|ref|YP_007281531.1| - 2.9e-17 62.5 0.1 4.5e-17 61.9 0.1 1.4 1 1 0 1 1 1 1 Thioesterase superfamily Acyl-ACP_TE PF01643.12 gi|433592035|ref|YP_007281531.1| - 8.5e-16 57.6 0.1 2.7e-11 42.9 0.0 2.0 1 1 1 2 2 2 2 Acyl-ACP thioesterase 4HBT_3 PF13622.1 gi|433592035|ref|YP_007281531.1| - 8.5e-05 22.4 0.0 0.0001 22.1 0.0 1.1 1 0 0 1 1 1 1 Thioesterase-like superfamily Thi4 PF01946.12 gi|433592037|ref|YP_007281533.1| - 8.9e-61 204.9 0.5 1.8e-48 164.6 0.1 2.4 2 1 1 3 3 3 2 Thi4 family DAO PF01266.19 gi|433592037|ref|YP_007281533.1| - 5.5e-11 41.9 0.8 1.5e-06 27.3 0.1 2.2 1 1 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|433592037|ref|YP_007281533.1| - 1.2e-10 40.8 0.1 1.3e-07 30.8 0.0 2.3 2 0 0 2 2 2 2 FAD binding domain FAD_oxidored PF12831.2 gi|433592037|ref|YP_007281533.1| - 1.7e-10 40.5 0.3 2.5e-10 40.0 0.2 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|433592037|ref|YP_007281533.1| - 8.8e-10 38.1 0.0 1.7e-09 37.2 0.0 1.4 1 0 0 1 1 1 1 FAD binding domain NAD_binding_8 PF13450.1 gi|433592037|ref|YP_007281533.1| - 2.4e-08 33.8 0.1 5.6e-08 32.7 0.1 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.9 gi|433592037|ref|YP_007281533.1| - 6.3e-07 28.1 0.1 8.7e-07 27.7 0.0 1.2 1 0 0 1 1 1 1 HI0933-like protein Pyr_redox_3 PF13738.1 gi|433592037|ref|YP_007281533.1| - 1.8e-06 28.1 0.0 2.7e-06 27.5 0.0 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.9 gi|433592037|ref|YP_007281533.1| - 3.3e-06 27.1 0.3 5.7e-06 26.3 0.0 1.7 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|433592037|ref|YP_007281533.1| - 0.00016 22.0 0.2 0.00067 20.0 0.1 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.9 gi|433592037|ref|YP_007281533.1| - 0.0002 20.1 0.1 0.048 12.2 0.0 2.1 2 0 0 2 2 2 2 Tryptophan halogenase Lycopene_cycl PF05834.7 gi|433592037|ref|YP_007281533.1| - 0.00025 20.0 0.1 0.023 13.6 0.0 2.1 2 0 0 2 2 2 1 Lycopene cyclase protein NAD_binding_9 PF13454.1 gi|433592037|ref|YP_007281533.1| - 0.00039 20.2 0.1 0.0016 18.1 0.0 2.0 2 0 0 2 2 2 1 FAD-NAD(P)-binding NAD_binding_7 PF13241.1 gi|433592037|ref|YP_007281533.1| - 0.0009 19.4 0.0 0.002 18.3 0.0 1.7 1 1 0 1 1 1 1 Putative NAD(P)-binding GIDA PF01134.17 gi|433592037|ref|YP_007281533.1| - 0.0016 17.3 0.2 0.0026 16.6 0.1 1.3 1 0 0 1 1 1 1 Glucose inhibited division protein A Amino_oxidase PF01593.19 gi|433592037|ref|YP_007281533.1| - 0.0026 16.8 0.0 0.0061 15.6 0.0 1.6 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase Shikimate_DH PF01488.15 gi|433592037|ref|YP_007281533.1| - 0.013 15.6 0.0 0.08 13.0 0.0 2.0 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase TrkA_N PF02254.13 gi|433592037|ref|YP_007281533.1| - 0.042 13.8 0.3 0.13 12.3 0.0 2.0 2 0 0 2 2 2 0 TrkA-N domain MatE PF01554.13 gi|433592038|ref|YP_007281534.1| - 2.9e-60 202.5 32.3 1.2e-35 122.5 7.5 2.5 2 0 0 2 2 2 2 MatE Polysacc_synt_C PF14667.1 gi|433592038|ref|YP_007281534.1| - 9.5e-10 38.4 4.6 9.5e-10 38.4 3.2 5.0 1 1 3 4 4 4 2 Polysaccharide biosynthesis C-terminal domain CitMHS PF03600.11 gi|433592039|ref|YP_007281535.1| - 0.016 13.8 0.4 0.017 13.6 0.2 1.0 1 0 0 1 1 1 0 Citrate transporter Herpes_LMP2 PF07415.6 gi|433592039|ref|YP_007281535.1| - 0.048 12.2 0.8 0.052 12.1 0.6 1.0 1 0 0 1 1 1 0 Gammaherpesvirus latent membrane protein (LMP2) protein IncA PF04156.9 gi|433592039|ref|YP_007281535.1| - 0.21 11.1 3.7 0.24 10.9 2.5 1.0 1 0 0 1 1 1 0 IncA protein DUF606 PF04657.8 gi|433592039|ref|YP_007281535.1| - 0.42 10.7 7.7 0.5 10.4 5.4 1.1 1 0 0 1 1 1 0 Protein of unknown function, DUF606 Topoisom_bac PF01131.15 gi|433592040|ref|YP_007281536.1| - 2.9e-113 378.7 0.0 3.9e-113 378.3 0.0 1.2 1 0 0 1 1 1 1 DNA topoisomerase zf-C4_Topoisom PF01396.14 gi|433592040|ref|YP_007281536.1| - 2.6e-20 71.5 14.1 1.6e-13 49.8 0.6 3.6 4 0 0 4 4 4 2 Topoisomerase DNA binding C4 zinc finger Toprim PF01751.17 gi|433592040|ref|YP_007281536.1| - 1.2e-16 60.4 0.0 2.4e-16 59.5 0.0 1.6 1 0 0 1 1 1 1 Toprim domain HHH_5 PF14520.1 gi|433592040|ref|YP_007281536.1| - 2.6e-08 33.9 7.4 1.6e-07 31.3 0.9 3.2 3 1 0 3 3 3 1 Helix-hairpin-helix domain Cdd1 PF11731.3 gi|433592040|ref|YP_007281536.1| - 0.00027 20.8 0.0 0.00073 19.4 0.0 1.7 1 0 0 1 1 1 1 Pathogenicity locus DNA_pol_lambd_f PF10391.4 gi|433592040|ref|YP_007281536.1| - 0.0025 17.3 0.1 0.012 15.1 0.0 2.2 2 0 0 2 2 2 1 Fingers domain of DNA polymerase lambda HHH PF00633.18 gi|433592040|ref|YP_007281536.1| - 0.039 13.6 0.0 0.17 11.6 0.0 2.2 1 0 0 1 1 1 0 Helix-hairpin-helix motif DNA_primase_lrg PF04104.9 gi|433592040|ref|YP_007281536.1| - 0.2 10.8 0.0 0.38 9.9 0.0 1.4 1 0 0 1 1 1 0 Eukaryotic and archaeal DNA primase, large subunit AhpC-TSA PF00578.16 gi|433592041|ref|YP_007281537.1| - 3.6e-07 29.9 0.0 5.5e-07 29.3 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|433592041|ref|YP_007281537.1| - 4.4e-07 29.5 0.0 6.3e-07 29.0 0.0 1.2 1 0 0 1 1 1 1 Redoxin Thioredoxin_8 PF13905.1 gi|433592041|ref|YP_007281537.1| - 2.7e-05 24.2 0.0 4.5e-05 23.4 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin-like Thioredoxin_2 PF13098.1 gi|433592041|ref|YP_007281537.1| - 6.1e-05 23.1 0.0 8e-05 22.8 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin-like domain Thioredoxin PF00085.15 gi|433592041|ref|YP_007281537.1| - 0.00011 21.8 0.0 0.025 14.2 0.0 2.1 2 0 0 2 2 2 2 Thioredoxin Methyltransf_18 PF12847.2 gi|433592042|ref|YP_007281538.1| - 1.9e-15 57.3 0.1 2.8e-15 56.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain TehB PF03848.9 gi|433592042|ref|YP_007281538.1| - 5.6e-13 48.4 0.0 6.4e-13 48.3 0.0 1.1 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_23 PF13489.1 gi|433592042|ref|YP_007281538.1| - 8.9e-12 45.0 0.0 1.7e-11 44.1 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|433592042|ref|YP_007281538.1| - 2.8e-10 40.4 0.0 4e-10 39.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|433592042|ref|YP_007281538.1| - 4.2e-10 39.4 0.0 5.3e-10 39.0 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|433592042|ref|YP_007281538.1| - 9.7e-10 38.8 0.0 1.5e-09 38.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|433592042|ref|YP_007281538.1| - 3.2e-09 37.1 0.0 4.9e-09 36.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|433592042|ref|YP_007281538.1| - 6.9e-09 35.7 0.5 1.7e-08 34.5 0.3 1.7 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|433592042|ref|YP_007281538.1| - 1.7e-07 30.7 0.0 3.9e-07 29.5 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase small domain NodS PF05401.6 gi|433592042|ref|YP_007281538.1| - 5.8e-06 25.8 0.0 6.8e-06 25.6 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) Ubie_methyltran PF01209.13 gi|433592042|ref|YP_007281538.1| - 5.2e-05 22.4 0.0 6.5e-05 22.1 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_PK PF05891.7 gi|433592042|ref|YP_007281538.1| - 0.00013 21.3 0.0 0.00018 20.9 0.0 1.2 1 0 0 1 1 1 1 AdoMet dependent proline di-methyltransferase TPMT PF05724.6 gi|433592042|ref|YP_007281538.1| - 0.00047 19.6 0.0 0.00065 19.1 0.0 1.3 1 0 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) PrmA PF06325.8 gi|433592042|ref|YP_007281538.1| - 0.017 14.2 0.0 0.024 13.7 0.0 1.1 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Mur_ligase PF01225.20 gi|433592042|ref|YP_007281538.1| - 0.067 13.2 0.0 0.12 12.4 0.0 1.5 1 0 0 1 1 1 0 Mur ligase family, catalytic domain 3HCDH_N PF02737.13 gi|433592042|ref|YP_007281538.1| - 0.12 12.0 0.0 0.16 11.6 0.0 1.2 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LysE PF01810.13 gi|433592043|ref|YP_007281539.1| - 1.9e-28 99.0 8.5 3.7e-27 94.8 5.9 2.0 1 1 0 1 1 1 1 LysE type translocator HD PF01966.17 gi|433592044|ref|YP_007281540.1| - 1e-16 61.0 3.0 1.7e-16 60.3 2.1 1.4 1 0 0 1 1 1 1 HD domain HD_4 PF13328.1 gi|433592044|ref|YP_007281540.1| - 0.0013 18.4 0.4 0.0022 17.7 0.3 1.4 1 0 0 1 1 1 1 HD domain XylR_N PF06505.6 gi|433592044|ref|YP_007281540.1| - 0.042 13.2 0.0 0.33 10.3 0.0 2.1 2 0 0 2 2 2 0 Activator of aromatic catabolism B12-binding PF02310.14 gi|433592045|ref|YP_007281541.1| - 1.7e-20 73.1 1.2 1.9e-20 72.9 0.9 1.1 1 0 0 1 1 1 1 B12 binding domain Nitro_FeMo-Co PF02579.12 gi|433592045|ref|YP_007281541.1| - 0.032 14.2 0.4 1.4 9.0 0.0 2.5 2 1 1 3 3 3 0 Dinitrogenase iron-molybdenum cofactor BcrAD_BadFG PF01869.15 gi|433592045|ref|YP_007281541.1| - 0.055 12.7 0.0 0.13 11.4 0.0 1.6 1 1 0 1 1 1 0 BadF/BadG/BcrA/BcrD ATPase family Staph_haemo PF05480.6 gi|433592045|ref|YP_007281541.1| - 0.083 12.5 0.0 0.2 11.3 0.0 1.6 1 0 0 1 1 1 0 Staphylococcus haemolytic protein ArgK PF03308.11 gi|433592046|ref|YP_007281542.1| - 1.3e-96 322.5 4.9 1.6e-96 322.2 3.4 1.1 1 0 0 1 1 1 1 ArgK protein cobW PF02492.14 gi|433592046|ref|YP_007281542.1| - 2.9e-09 36.6 1.6 2e-08 33.8 1.1 2.1 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_17 PF13207.1 gi|433592046|ref|YP_007281542.1| - 1e-05 26.3 1.0 3e-05 24.8 0.6 2.2 1 1 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|433592046|ref|YP_007281542.1| - 1.3e-05 24.7 0.1 2.7e-05 23.7 0.0 1.5 1 1 0 1 1 1 1 AAA-like domain AAA_16 PF13191.1 gi|433592046|ref|YP_007281542.1| - 1.6e-05 24.9 0.1 0.00031 20.7 0.0 2.4 2 0 0 2 2 2 1 AAA ATPase domain SRP54 PF00448.17 gi|433592046|ref|YP_007281542.1| - 2.3e-05 23.9 0.5 6e-05 22.5 0.3 1.7 1 1 0 1 1 1 1 SRP54-type protein, GTPase domain ATP_bind_1 PF03029.12 gi|433592046|ref|YP_007281542.1| - 3.9e-05 23.2 0.0 8.8e-05 22.1 0.0 1.5 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein GTP_EFTU PF00009.22 gi|433592046|ref|YP_007281542.1| - 9e-05 21.9 0.1 0.21 11.0 0.0 2.3 2 0 0 2 2 2 2 Elongation factor Tu GTP binding domain NTPase_1 PF03266.10 gi|433592046|ref|YP_007281542.1| - 0.00017 21.3 0.1 0.00041 20.1 0.1 1.6 1 0 0 1 1 1 1 NTPase AAA_30 PF13604.1 gi|433592046|ref|YP_007281542.1| - 0.00029 20.4 0.0 0.00059 19.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|433592046|ref|YP_007281542.1| - 0.00041 20.6 0.3 0.0027 18.0 0.1 2.2 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|433592046|ref|YP_007281542.1| - 0.00045 19.9 4.5 0.0007 19.3 0.2 2.8 3 0 0 3 3 2 1 Part of AAA domain ABC_tran PF00005.22 gi|433592046|ref|YP_007281542.1| - 0.00061 20.0 0.1 0.0011 19.2 0.0 1.4 1 0 0 1 1 1 1 ABC transporter CbiA PF01656.18 gi|433592046|ref|YP_007281542.1| - 0.0012 18.2 0.7 0.0022 17.4 0.5 1.4 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_22 PF13401.1 gi|433592046|ref|YP_007281542.1| - 0.0023 18.0 0.0 0.0066 16.5 0.0 1.8 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|433592046|ref|YP_007281542.1| - 0.0036 16.8 0.1 0.0091 15.5 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain TrwB_AAD_bind PF10412.4 gi|433592046|ref|YP_007281542.1| - 0.0043 15.7 0.0 0.0074 14.9 0.0 1.3 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain AAA_28 PF13521.1 gi|433592046|ref|YP_007281542.1| - 0.0061 16.5 1.5 0.0066 16.4 0.1 1.7 2 0 0 2 2 1 1 AAA domain Zeta_toxin PF06414.7 gi|433592046|ref|YP_007281542.1| - 0.0099 14.9 0.0 0.018 14.1 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin DUF258 PF03193.11 gi|433592046|ref|YP_007281542.1| - 0.015 14.5 0.0 0.024 13.8 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 MobB PF03205.9 gi|433592046|ref|YP_007281542.1| - 0.015 15.0 0.1 0.036 13.7 0.1 1.7 1 1 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B KAP_NTPase PF07693.9 gi|433592046|ref|YP_007281542.1| - 0.015 14.3 0.0 0.02 13.9 0.0 1.2 1 0 0 1 1 1 0 KAP family P-loop domain MMR_HSR1 PF01926.18 gi|433592046|ref|YP_007281542.1| - 0.019 14.9 0.1 0.039 13.8 0.1 1.7 1 1 0 1 1 1 0 50S ribosome-binding GTPase KTI12 PF08433.5 gi|433592046|ref|YP_007281542.1| - 0.019 14.1 0.0 0.035 13.3 0.0 1.4 1 0 0 1 1 1 0 Chromatin associated protein KTI12 NB-ARC PF00931.17 gi|433592046|ref|YP_007281542.1| - 0.027 13.3 0.0 0.042 12.6 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain PRK PF00485.13 gi|433592046|ref|YP_007281542.1| - 0.028 13.9 0.1 0.07 12.6 0.0 1.7 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA_33 PF13671.1 gi|433592046|ref|YP_007281542.1| - 0.036 13.9 0.0 0.12 12.1 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.1 gi|433592046|ref|YP_007281542.1| - 0.037 13.4 1.0 0.16 11.3 0.1 2.4 2 1 1 3 3 3 0 AAA domain CitG PF01874.11 gi|433592046|ref|YP_007281542.1| - 0.048 12.8 0.3 6.2 5.9 0.0 2.2 2 0 0 2 2 2 0 ATP:dephospho-CoA triphosphoribosyl transferase NACHT PF05729.7 gi|433592046|ref|YP_007281542.1| - 0.058 13.0 0.0 0.15 11.7 0.0 1.7 1 0 0 1 1 1 0 NACHT domain Miro PF08477.8 gi|433592046|ref|YP_007281542.1| - 0.091 13.2 0.0 0.19 12.2 0.0 1.6 1 0 0 1 1 1 0 Miro-like protein Thymidylate_kin PF02223.12 gi|433592046|ref|YP_007281542.1| - 0.1 11.9 0.1 0.35 10.2 0.0 1.8 2 0 0 2 2 2 0 Thymidylate kinase AAA_14 PF13173.1 gi|433592046|ref|YP_007281542.1| - 0.13 12.1 0.0 0.25 11.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain Abhydrolase_6 PF12697.2 gi|433592047|ref|YP_007281543.1| - 5.9e-35 121.1 6.3 7.1e-35 120.9 4.4 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|433592047|ref|YP_007281543.1| - 1.7e-13 50.5 0.0 1.2e-12 47.7 0.0 1.9 1 1 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.3 gi|433592047|ref|YP_007281543.1| - 8e-05 22.4 0.0 0.00015 21.5 0.0 1.4 1 0 0 1 1 1 1 Putative lysophospholipase Abhydrolase_1 PF00561.15 gi|433592047|ref|YP_007281543.1| - 0.00028 20.5 0.1 0.0047 16.5 0.0 2.1 1 1 0 1 1 1 1 alpha/beta hydrolase fold Thioesterase PF00975.15 gi|433592047|ref|YP_007281543.1| - 0.031 14.4 0.0 0.062 13.5 0.0 1.5 1 0 0 1 1 1 0 Thioesterase domain Rick_17kDa_Anti PF05433.10 gi|433592047|ref|YP_007281543.1| - 0.034 13.8 0.9 0.034 13.8 0.6 1.7 2 0 0 2 2 2 0 Glycine zipper 2TM domain Gly-zipper_YMGG PF13441.1 gi|433592047|ref|YP_007281543.1| - 0.077 12.5 2.2 0.15 11.6 1.5 1.4 1 0 0 1 1 1 0 YMGG-like Gly-zipper OrfB_Zn_ribbon PF07282.6 gi|433592048|ref|YP_007281544.1| - 9.1e-20 70.1 0.5 2.1e-19 68.9 0.4 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain DUF35 PF01796.12 gi|433592050|ref|YP_007281546.1| - 2.2e-14 53.4 1.3 3.2e-14 52.9 0.9 1.3 1 0 0 1 1 1 1 DUF35 OB-fold domain DUF35_N PF12172.3 gi|433592050|ref|YP_007281546.1| - 0.00021 21.0 3.0 0.00048 19.9 2.1 1.6 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) DZR PF12773.2 gi|433592050|ref|YP_007281546.1| - 0.095 12.5 0.1 0.15 11.9 0.1 1.2 1 0 0 1 1 1 0 Double zinc ribbon ADK_lid PF05191.9 gi|433592050|ref|YP_007281546.1| - 0.14 11.8 1.0 0.26 11.0 0.7 1.5 1 0 0 1 1 1 0 Adenylate kinase, active site lid Thiolase_N PF00108.18 gi|433592051|ref|YP_007281547.1| - 3.8e-12 45.7 0.1 2e-10 40.1 0.0 2.2 2 0 0 2 2 2 2 Thiolase, N-terminal domain ketoacyl-synt PF00109.21 gi|433592051|ref|YP_007281547.1| - 2.2e-10 40.4 5.6 3.1e-09 36.6 1.4 2.9 2 1 0 2 2 2 1 Beta-ketoacyl synthase, N-terminal domain Thiolase_C PF02803.13 gi|433592051|ref|YP_007281547.1| - 2e-09 36.9 0.4 4.7e-09 35.7 0.2 1.6 1 0 0 1 1 1 1 Thiolase, C-terminal domain Peptidase_M42 PF05343.9 gi|433592052|ref|YP_007281548.1| - 4.7e-87 291.4 4.5 5.4e-87 291.2 3.1 1.0 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.23 gi|433592052|ref|YP_007281548.1| - 1.8e-16 60.1 2.1 2e-16 60.0 0.6 1.7 1 1 1 2 2 2 1 Peptidase family M20/M25/M40 Peptidase_M18 PF02127.10 gi|433592052|ref|YP_007281548.1| - 2.5e-10 39.4 0.6 4.3e-05 22.2 0.1 2.1 1 1 1 2 2 2 2 Aminopeptidase I zinc metalloprotease (M18) HTH_19 PF12844.2 gi|433592053|ref|YP_007281549.1| - 0.0054 16.7 0.0 0.007 16.3 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.17 gi|433592053|ref|YP_007281549.1| - 0.022 14.6 0.1 0.031 14.1 0.1 1.3 1 1 0 1 1 1 0 Helix-turn-helix HTH_31 PF13560.1 gi|433592053|ref|YP_007281549.1| - 0.14 12.3 3.6 0.2 11.8 2.5 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain Na_sulph_symp PF00939.14 gi|433592054|ref|YP_007281550.1| - 3.8e-78 263.4 31.3 4.9e-78 263.0 21.7 1.0 1 0 0 1 1 1 1 Sodium:sulfate symporter transmembrane region CitMHS PF03600.11 gi|433592054|ref|YP_007281550.1| - 1.3e-15 56.9 40.1 2.5e-08 32.9 7.7 3.2 2 1 1 3 3 3 3 Citrate transporter Acetyltransf_1 PF00583.19 gi|433592055|ref|YP_007281551.1| - 1.2e-10 41.2 0.0 1.8e-10 40.7 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|433592055|ref|YP_007281551.1| - 5.2e-10 39.3 0.0 6.9e-10 38.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|433592055|ref|YP_007281551.1| - 2e-08 34.3 0.1 2.4e-08 34.0 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|433592055|ref|YP_007281551.1| - 7.2e-06 25.9 0.5 8.6e-06 25.7 0.4 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|433592055|ref|YP_007281551.1| - 8.3e-05 22.2 0.0 0.00023 20.8 0.0 1.7 1 1 0 1 1 1 1 FR47-like protein UbiA PF01040.13 gi|433592056|ref|YP_007281552.1| - 8.9e-28 97.1 28.0 8.9e-28 97.1 19.4 2.8 2 1 0 2 2 2 1 UbiA prenyltransferase family COX15-CtaA PF02628.10 gi|433592056|ref|YP_007281552.1| - 1.3e-20 73.5 10.1 1.3e-20 73.5 7.0 2.5 3 0 0 3 3 3 1 Cytochrome oxidase assembly protein SPC25 PF06703.6 gi|433592056|ref|YP_007281552.1| - 9 5.8 6.3 49 3.4 1.7 2.8 2 0 0 2 2 2 0 Microsomal signal peptidase 25 kDa subunit (SPC25) zf-CHCC PF10276.4 gi|433592057|ref|YP_007281553.1| - 0.011 15.5 1.1 0.015 15.1 0.3 1.5 2 0 0 2 2 2 0 Zinc-finger domain zf-C2H2 PF00096.21 gi|433592057|ref|YP_007281553.1| - 0.026 14.8 0.6 0.041 14.2 0.4 1.3 1 0 0 1 1 1 0 Zinc finger, C2H2 type Zn-ribbon_8 PF09723.5 gi|433592057|ref|YP_007281553.1| - 0.042 13.8 0.2 0.076 12.9 0.1 1.4 1 0 0 1 1 1 0 Zinc ribbon domain zinc_ribbon_2 PF13240.1 gi|433592057|ref|YP_007281553.1| - 0.11 12.0 0.6 0.17 11.4 0.4 1.3 1 0 0 1 1 1 0 zinc-ribbon domain zf-C2H2_4 PF13894.1 gi|433592057|ref|YP_007281553.1| - 0.12 12.7 0.7 0.23 11.8 0.5 1.4 1 0 0 1 1 1 0 C2H2-type zinc finger DUF3267 PF11667.3 gi|433592059|ref|YP_007281555.1| - 7.6e-19 67.9 1.2 8.1e-19 67.8 0.1 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF3267) PadR PF03551.9 gi|433592060|ref|YP_007281556.1| - 6.2e-07 29.1 0.0 8.4e-07 28.6 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family DUF1495 PF07381.6 gi|433592060|ref|YP_007281556.1| - 0.0039 16.8 0.0 0.019 14.6 0.0 1.9 1 1 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) HTH_45 PF14947.1 gi|433592060|ref|YP_007281556.1| - 0.042 13.6 0.0 0.056 13.2 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_20 PF12840.2 gi|433592060|ref|YP_007281556.1| - 0.078 12.7 0.0 0.12 12.1 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain TrmB PF01978.14 gi|433592060|ref|YP_007281556.1| - 0.1 12.3 0.0 0.16 11.7 0.0 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB YcfA PF07927.7 gi|433592060|ref|YP_007281556.1| - 0.13 12.1 0.0 0.21 11.4 0.0 1.3 1 0 0 1 1 1 0 YcfA-like protein zf-HC2 PF13490.1 gi|433592060|ref|YP_007281556.1| - 0.24 11.3 1.1 6.9 6.7 0.4 2.5 2 1 0 2 2 2 0 Putative zinc-finger BRI3BP PF14965.1 gi|433592061|ref|YP_007281557.1| - 0.075 12.4 0.1 0.075 12.4 0.1 1.1 1 0 0 1 1 1 0 Negative regulator of p53/TP53 COX2-transmemb PF09125.5 gi|433592061|ref|YP_007281557.1| - 5 6.7 5.6 0.73 9.4 0.3 1.9 2 0 0 2 2 2 0 Cytochrome C oxidase subunit II, transmembrane Acyl-CoA_dh_1 PF00441.19 gi|433592062|ref|YP_007281558.1| - 1.3e-48 164.8 0.7 2.1e-48 164.2 0.5 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|433592062|ref|YP_007281558.1| - 2.4e-36 124.7 0.2 5.1e-36 123.6 0.2 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.6 gi|433592062|ref|YP_007281558.1| - 4.8e-23 81.8 0.5 7.4e-23 81.2 0.4 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.14 gi|433592062|ref|YP_007281558.1| - 1.6e-20 72.3 0.5 9e-20 69.9 0.2 2.2 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, middle domain AMP-binding PF00501.23 gi|433592063|ref|YP_007281559.1| - 4.7e-86 288.7 0.0 5.6e-86 288.5 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|433592063|ref|YP_007281559.1| - 9e-21 74.6 0.4 1.7e-20 73.7 0.2 1.5 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain NAD_binding_10 PF13460.1 gi|433592064|ref|YP_007281560.1| - 6.3e-37 127.3 0.2 8e-37 127.0 0.1 1.0 1 0 0 1 1 1 1 NADH(P)-binding NmrA PF05368.8 gi|433592064|ref|YP_007281560.1| - 5e-18 65.2 0.0 7e-18 64.7 0.0 1.1 1 0 0 1 1 1 1 NmrA-like family Epimerase PF01370.16 gi|433592064|ref|YP_007281560.1| - 2.3e-15 56.6 0.0 3.2e-15 56.2 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|433592064|ref|YP_007281560.1| - 1.2e-08 34.0 0.0 1.5e-08 33.7 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family TrkA_N PF02254.13 gi|433592064|ref|YP_007281560.1| - 8.5e-06 25.7 0.0 2.2e-05 24.4 0.0 1.7 1 1 0 1 1 1 1 TrkA-N domain adh_short PF00106.20 gi|433592064|ref|YP_007281560.1| - 0.00076 19.4 0.1 0.037 13.9 0.1 2.3 1 1 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|433592064|ref|YP_007281560.1| - 0.0052 16.4 0.4 3.7 7.1 0.0 2.5 1 1 1 2 2 2 2 KR domain Semialdhyde_dh PF01118.19 gi|433592064|ref|YP_007281560.1| - 0.0081 16.4 0.1 0.012 15.9 0.0 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain NAD_binding_4 PF07993.7 gi|433592064|ref|YP_007281560.1| - 0.011 14.6 0.0 0.027 13.4 0.0 1.6 1 1 1 2 2 2 0 Male sterility protein RmlD_sub_bind PF04321.12 gi|433592064|ref|YP_007281560.1| - 0.018 13.9 0.0 0.14 11.0 0.0 2.0 1 1 0 1 1 1 0 RmlD substrate binding domain PAC2 PF09754.4 gi|433592064|ref|YP_007281560.1| - 0.026 14.4 0.0 0.039 13.8 0.0 1.3 1 0 0 1 1 1 0 PAC2 family Saccharop_dh PF03435.13 gi|433592064|ref|YP_007281560.1| - 0.029 13.3 0.0 0.039 12.9 0.0 1.1 1 0 0 1 1 1 0 Saccharopine dehydrogenase Polysacc_synt_2 PF02719.10 gi|433592064|ref|YP_007281560.1| - 0.15 10.8 0.0 1.2 7.9 0.0 2.3 1 1 0 1 1 1 0 Polysaccharide biosynthesis protein SQS_PSY PF00494.14 gi|433592065|ref|YP_007281561.1| - 8.7e-50 169.4 3.7 1.1e-49 169.1 2.6 1.1 1 0 0 1 1 1 1 Squalene/phytoene synthase VKG_Carbox PF05090.9 gi|433592066|ref|YP_007281562.1| - 0.0033 16.3 0.0 0.0044 15.9 0.0 1.1 1 0 0 1 1 1 1 Vitamin K-dependent gamma-carboxylase HrpB4 PF09502.5 gi|433592067|ref|YP_007281563.1| - 0.13 11.4 2.4 0.18 10.9 0.8 1.8 2 0 0 2 2 2 0 Bacterial type III secretion protein (HrpB4) 3HCDH_N PF02737.13 gi|433592068|ref|YP_007281564.1| - 1.6e-57 194.0 0.1 2e-57 193.7 0.1 1.1 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 3HCDH PF00725.17 gi|433592068|ref|YP_007281564.1| - 7.4e-33 112.8 0.0 1.7e-32 111.7 0.0 1.6 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NAD_binding_2 PF03446.10 gi|433592068|ref|YP_007281564.1| - 0.00034 20.4 0.9 0.00053 19.8 0.3 1.7 2 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_Gly3P_dh_N PF01210.18 gi|433592068|ref|YP_007281564.1| - 0.00082 19.1 0.1 0.002 17.8 0.0 1.6 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus F420_oxidored PF03807.12 gi|433592068|ref|YP_007281564.1| - 0.0015 18.9 0.5 0.0089 16.4 0.1 2.3 2 1 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.14 gi|433592068|ref|YP_007281564.1| - 0.022 13.8 0.0 0.039 13.1 0.0 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.9 gi|433592068|ref|YP_007281564.1| - 0.053 12.8 2.4 0.068 12.5 0.5 1.9 1 1 1 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain adh_short_C2 PF13561.1 gi|433592068|ref|YP_007281564.1| - 0.1 12.3 0.1 0.21 11.3 0.0 1.4 1 1 0 1 1 1 0 Enoyl-(Acyl carrier protein) reductase DAO PF01266.19 gi|433592068|ref|YP_007281564.1| - 0.22 10.3 1.4 0.88 8.4 0.4 1.9 2 0 0 2 2 2 0 FAD dependent oxidoreductase HHH_5 PF14520.1 gi|433592069|ref|YP_007281565.1| - 0.00023 21.2 2.1 0.00067 19.7 0.1 2.6 2 1 0 2 2 2 1 Helix-hairpin-helix domain DUF3306 PF11748.3 gi|433592069|ref|YP_007281565.1| - 0.0011 19.5 3.8 0.0026 18.4 2.7 1.8 1 1 0 1 1 1 1 Protein of unknown function (DUF3306) DUF4332 PF14229.1 gi|433592069|ref|YP_007281565.1| - 0.014 15.3 0.0 0.037 13.9 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4332) DNA_pol_lambd_f PF10391.4 gi|433592069|ref|YP_007281565.1| - 0.096 12.2 0.0 0.19 11.2 0.0 1.4 1 0 0 1 1 1 0 Fingers domain of DNA polymerase lambda DeoC PF01791.4 gi|433592070|ref|YP_007281566.1| - 2e-35 122.2 0.0 2.3e-35 121.9 0.0 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase FBPase PF00316.15 gi|433592071|ref|YP_007281567.1| - 2.1e-61 207.5 0.0 2.4e-61 207.3 0.0 1.0 1 0 0 1 1 1 1 Fructose-1-6-bisphosphatase Inositol_P PF00459.20 gi|433592071|ref|YP_007281567.1| - 0.0029 16.9 0.1 0.0042 16.4 0.0 1.3 1 0 0 1 1 1 1 Inositol monophosphatase family 2TM PF13239.1 gi|433592072|ref|YP_007281568.1| - 2 8.5 5.7 2.4 8.3 3.9 1.1 1 0 0 1 1 1 0 2TM domain DUF1469 PF07332.6 gi|433592072|ref|YP_007281568.1| - 6.8 6.4 10.2 8.3 6.1 7.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) DUF4383 PF14325.1 gi|433592074|ref|YP_007281570.1| - 0.096 12.6 2.3 0.12 12.3 1.6 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4383) Aldedh PF00171.17 gi|433592076|ref|YP_007281572.1| - 1e-138 462.5 0.0 1.1e-138 462.4 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family DUF2336 PF10098.4 gi|433592076|ref|YP_007281572.1| - 0.13 11.5 3.4 0.29 10.3 1.0 2.3 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2336) Terminase_GpA PF05876.7 gi|433592077|ref|YP_007281573.1| - 0.0019 16.6 0.8 0.0022 16.4 0.5 1.0 1 0 0 1 1 1 1 Phage terminase large subunit (GpA) DZR PF12773.2 gi|433592077|ref|YP_007281573.1| - 0.0088 15.8 0.3 0.015 15.1 0.2 1.4 1 1 0 1 1 1 1 Double zinc ribbon A2L_zn_ribbon PF08792.5 gi|433592077|ref|YP_007281573.1| - 0.0097 15.3 3.0 1.6 8.3 0.0 2.2 2 0 0 2 2 2 2 A2L zinc ribbon domain PhnA_Zn_Ribbon PF08274.7 gi|433592077|ref|YP_007281573.1| - 0.0098 15.6 3.9 0.049 13.4 0.0 2.1 2 0 0 2 2 2 1 PhnA Zinc-Ribbon OrfB_Zn_ribbon PF07282.6 gi|433592077|ref|YP_007281573.1| - 0.011 15.3 1.1 0.035 13.7 0.8 1.7 1 1 1 2 2 2 0 Putative transposase DNA-binding domain ArfGap PF01412.13 gi|433592077|ref|YP_007281573.1| - 0.026 14.3 0.7 0.029 14.1 0.5 1.1 1 0 0 1 1 1 0 Putative GTPase activating protein for Arf TF_Zn_Ribbon PF08271.7 gi|433592077|ref|YP_007281573.1| - 0.04 13.2 9.3 0.21 10.9 6.5 2.0 1 1 0 1 1 1 0 TFIIB zinc-binding zinc_ribbon_2 PF13240.1 gi|433592077|ref|YP_007281573.1| - 0.086 12.3 0.1 0.086 12.3 0.1 1.9 2 0 0 2 2 2 0 zinc-ribbon domain Zn_ribbon_recom PF13408.1 gi|433592077|ref|YP_007281573.1| - 0.09 13.0 2.5 4 7.7 0.0 2.1 1 1 1 2 2 2 0 Recombinase zinc beta ribbon domain zf-NADH-PPase PF09297.6 gi|433592077|ref|YP_007281573.1| - 0.09 12.3 1.8 0.71 9.4 0.1 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Lar_restr_allev PF14354.1 gi|433592077|ref|YP_007281573.1| - 0.14 12.5 3.1 0.41 11.0 2.2 1.8 1 1 0 1 1 1 0 Restriction alleviation protein Lar Zn-ribbon_8 PF09723.5 gi|433592077|ref|YP_007281573.1| - 0.14 12.1 2.0 3.6 7.6 0.1 2.2 2 0 0 2 2 2 0 Zinc ribbon domain UPF0547 PF10571.4 gi|433592077|ref|YP_007281573.1| - 0.16 11.6 0.3 0.16 11.6 0.2 1.9 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Nudix_N_2 PF14803.1 gi|433592077|ref|YP_007281573.1| - 0.17 11.5 7.5 0.54 9.9 4.9 2.0 1 1 0 1 1 1 0 Nudix N-terminal zf-LYAR PF08790.6 gi|433592077|ref|YP_007281573.1| - 0.19 11.4 0.3 0.19 11.4 0.2 1.9 2 0 0 2 2 2 0 LYAR-type C2HC zinc finger DUF2387 PF09526.5 gi|433592077|ref|YP_007281573.1| - 0.43 10.5 3.4 0.81 9.6 2.3 1.5 1 1 1 2 2 2 0 Probable metal-binding protein (DUF2387) zf-ISL3 PF14690.1 gi|433592077|ref|YP_007281573.1| - 0.78 9.8 0.1 0.78 9.8 0.1 2.1 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zinc_ribbon_6 PF14599.1 gi|433592077|ref|YP_007281573.1| - 0.91 9.3 3.1 1.1 9.0 0.0 2.0 1 1 1 2 2 2 0 Zinc-ribbon zf-ribbon_3 PF13248.1 gi|433592077|ref|YP_007281573.1| - 1.5 8.1 7.5 0.35 10.1 0.5 2.0 1 1 1 2 2 2 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|433592077|ref|YP_007281573.1| - 2.1 8.2 6.4 5.4 6.9 1.9 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zf-trcl PF13451.1 gi|433592077|ref|YP_007281573.1| - 9.1 6.0 6.3 20 4.9 0.0 2.4 2 1 0 2 2 2 0 Probable zinc-binding domain Cdc6_C PF09079.6 gi|433592078|ref|YP_007281574.1| - 1.2e-14 53.8 1.1 3.1e-14 52.4 0.1 2.0 2 0 0 2 2 2 1 CDC6, C terminal AAA_16 PF13191.1 gi|433592078|ref|YP_007281574.1| - 3.6e-11 43.4 0.6 1.8e-10 41.1 0.4 2.3 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|433592078|ref|YP_007281574.1| - 5.1e-11 42.8 0.1 1.6e-10 41.2 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_5 PF07728.9 gi|433592078|ref|YP_007281574.1| - 7.6e-07 28.9 0.0 1.9e-06 27.6 0.0 1.7 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.24 gi|433592078|ref|YP_007281574.1| - 1.9e-06 28.0 0.1 5.4e-06 26.6 0.0 1.8 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) NACHT PF05729.7 gi|433592078|ref|YP_007281574.1| - 4.2e-06 26.5 0.0 6.8e-06 25.8 0.0 1.3 1 0 0 1 1 1 1 NACHT domain DUF815 PF05673.8 gi|433592078|ref|YP_007281574.1| - 3.8e-05 22.7 0.0 8.8e-05 21.5 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF815) Sigma54_activat PF00158.21 gi|433592078|ref|YP_007281574.1| - 0.00013 21.4 0.0 0.00044 19.7 0.0 1.8 2 0 0 2 2 2 1 Sigma-54 interaction domain NB-ARC PF00931.17 gi|433592078|ref|YP_007281574.1| - 0.0025 16.7 0.0 0.0036 16.1 0.0 1.3 1 0 0 1 1 1 1 NB-ARC domain Arch_ATPase PF01637.13 gi|433592078|ref|YP_007281574.1| - 0.0038 16.9 0.0 0.0082 15.8 0.0 1.6 1 1 0 1 1 1 1 Archaeal ATPase AAA_25 PF13481.1 gi|433592078|ref|YP_007281574.1| - 0.0038 16.6 0.0 0.0097 15.3 0.0 1.7 1 0 0 1 1 1 1 AAA domain DUF2791 PF10923.3 gi|433592078|ref|YP_007281574.1| - 0.004 15.8 0.0 0.0073 14.9 0.0 1.4 1 0 0 1 1 1 1 P-loop Domain of unknown function (DUF2791) PhoH PF02562.11 gi|433592078|ref|YP_007281574.1| - 0.0046 16.2 0.1 1.4 8.0 0.0 2.3 2 0 0 2 2 2 2 PhoH-like protein AAA_2 PF07724.9 gi|433592078|ref|YP_007281574.1| - 0.0067 16.3 0.0 0.016 15.1 0.0 1.6 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_32 PF13654.1 gi|433592078|ref|YP_007281574.1| - 0.018 13.7 0.6 0.89 8.1 0.3 2.1 2 0 0 2 2 2 0 AAA domain PIN PF01850.16 gi|433592078|ref|YP_007281574.1| - 0.021 15.1 1.7 0.044 14.1 0.9 1.8 1 1 1 2 2 1 0 PIN domain AAA_17 PF13207.1 gi|433592078|ref|YP_007281574.1| - 0.033 15.0 0.2 0.079 13.7 0.2 1.9 1 1 0 1 1 1 0 AAA domain DUF2075 PF09848.4 gi|433592078|ref|YP_007281574.1| - 0.089 11.7 0.0 0.11 11.4 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) ABC_tran PF00005.22 gi|433592078|ref|YP_007281574.1| - 0.089 13.0 0.2 0.35 11.1 0.1 2.1 1 1 0 1 1 1 0 ABC transporter RNA_helicase PF00910.17 gi|433592078|ref|YP_007281574.1| - 0.14 12.3 0.0 0.39 10.9 0.0 1.8 1 0 0 1 1 1 0 RNA helicase DEAD PF00270.24 gi|433592078|ref|YP_007281574.1| - 0.15 11.5 0.8 12 5.3 0.0 2.6 3 0 0 3 3 3 0 DEAD/DEAH box helicase ELFV_dehydrog PF00208.16 gi|433592079|ref|YP_007281575.1| - 1e-71 241.4 0.6 1.4e-71 240.9 0.4 1.2 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.13 gi|433592079|ref|YP_007281575.1| - 4.5e-50 168.6 0.0 6.9e-50 168.0 0.0 1.3 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AlaDh_PNT_C PF01262.16 gi|433592079|ref|YP_007281575.1| - 0.0051 16.3 0.3 0.015 14.8 0.0 1.9 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain Oxidored_nitro PF00148.14 gi|433592079|ref|YP_007281575.1| - 0.0063 15.2 0.0 0.0086 14.7 0.0 1.2 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase 2-Hacid_dh_C PF02826.14 gi|433592079|ref|YP_007281575.1| - 0.0085 15.2 0.5 0.017 14.3 0.0 1.7 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HupF_HypC PF01455.13 gi|433592080|ref|YP_007281576.1| - 0.02 14.8 0.0 0.041 13.8 0.0 1.5 1 0 0 1 1 1 0 HupF/HypC family TAT_signal PF10518.4 gi|433592080|ref|YP_007281576.1| - 0.037 14.0 3.3 0.061 13.3 2.3 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence NOA36 PF06524.7 gi|433592080|ref|YP_007281576.1| - 4.4 6.4 7.4 5.7 6.0 5.1 1.2 1 0 0 1 1 1 0 NOA36 protein Acyl-CoA_dh_1 PF00441.19 gi|433592081|ref|YP_007281577.1| - 1e-46 158.7 0.2 1.5e-46 158.2 0.1 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|433592081|ref|YP_007281577.1| - 3.2e-36 124.3 0.1 8.4e-36 122.9 0.1 1.7 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.14 gi|433592081|ref|YP_007281577.1| - 2.6e-18 65.2 0.4 1.3e-17 63.0 0.1 2.1 1 1 1 2 2 2 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.6 gi|433592081|ref|YP_007281577.1| - 5.2e-15 55.8 1.1 1e-14 54.9 0.7 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain RIO1 PF01163.17 gi|433592083|ref|YP_007281579.1| - 2.4e-10 40.1 0.0 3.9e-10 39.3 0.0 1.3 1 0 0 1 1 1 1 RIO1 family Kdo PF06293.9 gi|433592083|ref|YP_007281579.1| - 2.1e-07 30.1 0.0 3.3e-07 29.5 0.0 1.3 1 0 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family APH PF01636.18 gi|433592083|ref|YP_007281579.1| - 3.4e-07 30.2 5.9 0.00046 19.9 2.3 2.3 1 1 1 2 2 2 2 Phosphotransferase enzyme family Pkinase PF00069.20 gi|433592083|ref|YP_007281579.1| - 0.00028 20.1 0.0 0.00039 19.6 0.0 1.2 1 0 0 1 1 1 1 Protein kinase domain APH_6_hur PF04655.9 gi|433592083|ref|YP_007281579.1| - 0.05 12.7 0.3 0.14 11.2 0.1 1.7 1 1 1 2 2 2 0 Aminoglycoside/hydroxyurea antibiotic resistance kinase Aldedh PF00171.17 gi|433592084|ref|YP_007281580.1| - 2.6e-143 477.7 0.1 8.2e-114 380.4 0.1 2.0 1 1 1 2 2 2 2 Aldehyde dehydrogenase family LuxC PF05893.9 gi|433592084|ref|YP_007281580.1| - 0.0076 15.0 0.0 0.022 13.5 0.0 1.6 1 1 0 1 1 1 1 Acyl-CoA reductase (LuxC) NTP_transferase PF00483.18 gi|433592085|ref|YP_007281581.1| - 3e-36 124.9 0.0 4.7e-36 124.3 0.0 1.3 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|433592085|ref|YP_007281581.1| - 1.4e-17 64.2 0.1 2.6e-17 63.3 0.1 1.5 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.19 gi|433592085|ref|YP_007281581.1| - 1.1e-10 40.4 12.6 0.001 18.4 0.1 4.3 3 1 1 4 4 4 3 Bacterial transferase hexapeptide (six repeats) IspD PF01128.14 gi|433592085|ref|YP_007281581.1| - 2.2e-05 24.0 0.0 3.4e-05 23.4 0.0 1.3 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Hexapep_2 PF14602.1 gi|433592085|ref|YP_007281581.1| - 2.8 7.5 11.8 5 6.7 0.1 4.5 4 1 1 5 5 5 0 Hexapeptide repeat of succinyl-transferase DUF4149 PF13664.1 gi|433592086|ref|YP_007281582.1| - 0.027 14.5 0.8 0.027 14.5 0.5 2.6 1 1 1 3 3 3 0 Domain of unknown function (DUF4149) EamA PF00892.15 gi|433592086|ref|YP_007281582.1| - 0.65 10.0 9.1 0.25 11.4 3.2 2.2 1 1 1 2 2 2 0 EamA-like transporter family CN_hydrolase PF00795.17 gi|433592087|ref|YP_007281583.1| - 8.1e-30 103.5 0.0 1e-29 103.1 0.0 1.1 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase DUF3875 PF12991.2 gi|433592087|ref|YP_007281583.1| - 0.12 12.0 0.0 13 5.5 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function, B. Theta Gene description (DUF3875) Polyketide_cyc2 PF10604.4 gi|433592088|ref|YP_007281584.1| - 7.2e-19 68.3 1.2 8.3e-19 68.1 0.8 1.0 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport COXG PF06240.8 gi|433592088|ref|YP_007281584.1| - 2.6e-06 27.1 0.0 3.1e-06 26.8 0.0 1.1 1 0 0 1 1 1 1 Carbon monoxide dehydrogenase subunit G (CoxG) Polyketide_cyc PF03364.15 gi|433592088|ref|YP_007281584.1| - 7.1e-06 26.0 0.3 8.6e-06 25.7 0.2 1.1 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport DUF2505 PF10698.4 gi|433592088|ref|YP_007281584.1| - 0.012 15.1 0.0 0.72 9.3 0.0 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF2505) AHSA1 PF08327.6 gi|433592088|ref|YP_007281584.1| - 0.092 12.8 0.3 0.28 11.2 0.2 1.8 1 1 0 1 1 1 0 Activator of Hsp90 ATPase homolog 1-like protein FaeA PF04703.7 gi|433592089|ref|YP_007281585.1| - 0.00072 19.6 0.1 0.00091 19.3 0.1 1.2 1 0 0 1 1 1 1 FaeA-like protein HTH_24 PF13412.1 gi|433592089|ref|YP_007281585.1| - 0.027 13.8 0.1 1.3 8.4 0.0 2.4 3 0 0 3 3 3 0 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|433592089|ref|YP_007281585.1| - 0.088 12.3 0.1 0.62 9.6 0.0 2.1 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain NfeD PF01957.13 gi|433592090|ref|YP_007281586.1| - 0.15 12.2 4.2 0.15 12.1 2.9 1.0 1 0 0 1 1 1 0 NfeD-like C-terminal, partner-binding DUF3814 PF12769.2 gi|433592090|ref|YP_007281586.1| - 0.28 11.3 2.6 0.32 11.1 1.8 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3814) YrhK PF14145.1 gi|433592090|ref|YP_007281586.1| - 0.65 9.7 3.1 0.77 9.4 1.9 1.4 1 1 0 1 1 1 0 YrhK-like protein DUF2892 PF11127.3 gi|433592090|ref|YP_007281586.1| - 7.5 6.4 9.5 11 5.9 6.6 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2892) PhoU PF01895.14 gi|433592091|ref|YP_007281587.1| - 1.3e-12 48.0 2.2 2e-08 34.5 0.0 2.6 2 0 0 2 2 2 2 PhoU domain Antitoxin-MazE PF04014.13 gi|433592091|ref|YP_007281587.1| - 1.3e-08 34.3 0.0 2.6e-08 33.3 0.0 1.6 1 0 0 1 1 1 1 Antidote-toxin recognition MazE DUF2200 PF09966.4 gi|433592091|ref|YP_007281587.1| - 0.088 12.6 0.0 0.17 11.7 0.0 1.6 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2200) NAD_kinase PF01513.16 gi|433592092|ref|YP_007281588.1| - 8.9e-41 139.5 0.0 1.2e-40 139.1 0.0 1.1 1 0 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.19 gi|433592092|ref|YP_007281588.1| - 6.8e-06 25.5 0.2 2.6e-05 23.6 0.1 2.0 2 0 0 2 2 2 1 Diacylglycerol kinase catalytic domain Peripla_BP_4 PF13407.1 gi|433592092|ref|YP_007281588.1| - 0.038 13.3 0.1 0.063 12.6 0.0 1.5 1 0 0 1 1 1 0 Periplasmic binding protein domain MoCF_biosynth PF00994.19 gi|433592094|ref|YP_007281590.1| - 9.2e-36 122.3 0.3 1.4e-35 121.8 0.2 1.2 1 0 0 1 1 1 1 Probable molybdopterin binding domain DDE_5 PF13546.1 gi|433592095|ref|YP_007281591.1| - 1.8e-18 66.3 0.0 4.2e-18 65.1 0.0 1.4 1 1 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_1 PF01609.16 gi|433592095|ref|YP_007281591.1| - 3.3e-12 46.3 0.4 6.3e-12 45.4 0.1 1.6 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_2 PF04693.7 gi|433592095|ref|YP_007281591.1| - 0.00013 21.0 0.0 0.00057 18.9 0.0 1.9 1 1 0 1 1 1 1 Archaeal putative transposase ISC1217 HTH_20 PF12840.2 gi|433592096|ref|YP_007281592.1| - 2.8e-07 30.2 0.0 4.8e-07 29.4 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|433592096|ref|YP_007281592.1| - 0.00052 19.6 0.0 0.00086 18.9 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB RP-C PF03428.8 gi|433592096|ref|YP_007281592.1| - 0.00063 19.2 0.0 0.0007 19.0 0.0 1.2 1 0 0 1 1 1 1 Replication protein C N-terminal domain HTH_24 PF13412.1 gi|433592096|ref|YP_007281592.1| - 0.0013 18.0 0.0 0.0028 17.0 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding PadR PF03551.9 gi|433592096|ref|YP_007281592.1| - 0.044 13.5 0.0 0.074 12.8 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family DUF3040 PF11239.3 gi|433592096|ref|YP_007281592.1| - 0.071 13.1 0.1 0.14 12.2 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3040) HTH_36 PF13730.1 gi|433592096|ref|YP_007281592.1| - 0.097 12.8 0.0 0.17 12.0 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain PTPS PF01242.14 gi|433592097|ref|YP_007281593.1| - 6.7e-23 80.7 0.0 8.7e-23 80.3 0.0 1.1 1 0 0 1 1 1 1 6-pyruvoyl tetrahydropterin synthase Radical_SAM PF04055.16 gi|433592098|ref|YP_007281594.1| - 3.8e-23 82.4 0.2 2.2e-22 79.9 0.2 2.0 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|433592098|ref|YP_007281594.1| - 7.7e-17 61.4 0.0 1.2e-16 60.8 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|433592098|ref|YP_007281594.1| - 4e-11 43.2 0.0 6.1e-11 42.6 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain TP_methylase PF00590.15 gi|433592098|ref|YP_007281594.1| - 0.0049 16.5 0.1 0.035 13.8 0.0 2.0 2 0 0 2 2 2 1 Tetrapyrrole (Corrin/Porphyrin) Methylases QueC PF06508.8 gi|433592099|ref|YP_007281595.1| - 6.6e-74 247.7 0.0 7.6e-74 247.5 0.0 1.0 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC ThiI PF02568.9 gi|433592099|ref|YP_007281595.1| - 3.3e-07 29.9 0.0 6.5e-07 29.0 0.0 1.5 1 1 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) Asn_synthase PF00733.16 gi|433592099|ref|YP_007281595.1| - 8.7e-05 22.1 0.1 0.00015 21.3 0.0 1.3 1 0 0 1 1 1 1 Asparagine synthase tRNA_Me_trans PF03054.11 gi|433592099|ref|YP_007281595.1| - 0.00028 19.5 0.0 0.00035 19.2 0.0 1.1 1 0 0 1 1 1 1 tRNA methyl transferase NAD_synthase PF02540.12 gi|433592099|ref|YP_007281595.1| - 0.0016 17.4 0.0 0.0025 16.7 0.0 1.4 1 1 0 1 1 1 1 NAD synthase TusA PF01206.12 gi|433592100|ref|YP_007281596.1| - 2.2e-09 36.7 0.0 2.5e-09 36.5 0.0 1.1 1 0 0 1 1 1 1 Sulfurtransferase TusA DUF2249 PF10006.4 gi|433592103|ref|YP_007281599.1| - 1.7e-82 270.9 21.8 3.7e-25 87.2 0.6 4.1 4 0 0 4 4 4 4 Uncharacterized conserved protein (DUF2249) DUF3311 PF11755.3 gi|433592104|ref|YP_007281600.1| - 0.075 12.5 1.6 0.54 9.8 1.2 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3311) Fe-ADH PF00465.14 gi|433592105|ref|YP_007281601.1| - 2.5e-61 207.3 8.1 3e-61 207.0 5.6 1.0 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH_2 PF13685.1 gi|433592105|ref|YP_007281601.1| - 1.7e-10 40.6 0.1 1e-06 28.2 0.0 2.3 2 0 0 2 2 2 2 Iron-containing alcohol dehydrogenase DUF849 PF05853.7 gi|433592106|ref|YP_007281602.1| - 0.0053 15.6 0.0 0.013 14.3 0.0 1.8 1 1 0 1 1 1 1 Prokaryotic protein of unknown function (DUF849) NTP_transf_3 PF12804.2 gi|433592107|ref|YP_007281603.1| - 7.6e-36 123.6 1.7 9.4e-36 123.2 1.2 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain CTP_transf_3 PF02348.14 gi|433592107|ref|YP_007281603.1| - 0.00039 20.1 0.0 0.0026 17.4 0.0 2.1 2 1 1 3 3 3 1 Cytidylyltransferase IspD PF01128.14 gi|433592107|ref|YP_007281603.1| - 0.033 13.7 0.0 0.045 13.2 0.0 1.3 1 0 0 1 1 1 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Glycos_transf_2 PF00535.21 gi|433592107|ref|YP_007281603.1| - 0.1 12.2 0.0 0.16 11.5 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase family 2 Molybdopterin PF00384.17 gi|433592109|ref|YP_007281605.1| - 4.8e-77 259.5 0.0 6e-77 259.2 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|433592109|ref|YP_007281605.1| - 4.9e-29 100.3 0.1 1.1e-28 99.2 0.1 1.6 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.11 gi|433592109|ref|YP_007281605.1| - 3.2e-14 52.4 0.5 7.5e-14 51.2 0.3 1.7 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain zinc-ribbons_6 PF07191.7 gi|433592110|ref|YP_007281606.1| - 0.007 16.1 1.2 0.012 15.3 0.8 1.4 1 0 0 1 1 1 1 zinc-ribbons Auto_anti-p27 PF06677.7 gi|433592110|ref|YP_007281606.1| - 0.0083 15.8 0.2 0.13 12.0 0.0 2.3 2 0 0 2 2 2 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Lar_restr_allev PF14354.1 gi|433592110|ref|YP_007281606.1| - 0.034 14.4 1.5 0.08 13.2 1.0 1.6 1 0 0 1 1 1 0 Restriction alleviation protein Lar Bacteriocin_IIc PF10439.4 gi|433592110|ref|YP_007281606.1| - 0.6 10.2 4.0 1.6 8.9 2.8 1.7 1 0 0 1 1 1 0 Bacteriocin class II with double-glycine leader peptide PQQ PF01011.16 gi|433592112|ref|YP_007281608.1| - 9.2e-29 97.5 8.4 6.5e-05 22.2 0.0 7.6 7 0 0 7 7 7 6 PQQ enzyme repeat PQQ_2 PF13360.1 gi|433592112|ref|YP_007281608.1| - 3.3e-24 85.6 6.4 3.8e-13 49.4 0.5 3.2 2 1 0 2 2 2 2 PQQ-like domain PQQ_3 PF13570.1 gi|433592112|ref|YP_007281608.1| - 1.9e-09 37.4 36.1 0.00039 20.5 0.2 7.6 8 0 0 8 8 8 4 PQQ-like domain Copper-bind PF00127.15 gi|433592113|ref|YP_007281609.1| - 9.4e-09 35.4 0.0 2.3e-06 27.7 0.0 2.5 2 0 0 2 2 2 2 Copper binding proteins, plastocyanin/azurin family TAT_signal PF10518.4 gi|433592113|ref|YP_007281609.1| - 0.035 14.1 7.1 0.083 12.9 4.9 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence EamA PF00892.15 gi|433592114|ref|YP_007281610.1| - 3.8e-25 88.3 25.9 8.2e-13 48.5 7.6 2.2 2 0 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|433592114|ref|YP_007281610.1| - 1.5e-05 25.1 10.0 1.5e-05 25.1 6.9 3.5 1 1 3 4 4 4 2 Multidrug resistance efflux transporter NosL PF05573.7 gi|433592115|ref|YP_007281611.1| - 2.2e-09 37.1 0.0 3.5e-09 36.5 0.0 1.3 1 0 0 1 1 1 1 NosL Polyketide_cyc PF03364.15 gi|433592116|ref|YP_007281612.1| - 5.8e-08 32.7 0.0 7.7e-08 32.4 0.0 1.2 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc2 PF10604.4 gi|433592116|ref|YP_007281612.1| - 5e-05 23.4 0.3 5.6e-05 23.3 0.2 1.1 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport HTH_24 PF13412.1 gi|433592117|ref|YP_007281613.1| - 7.7e-14 50.8 0.0 1.4e-13 49.9 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding AsnC_trans_reg PF01037.16 gi|433592117|ref|YP_007281613.1| - 6.5e-11 41.7 0.0 1.1e-10 41.0 0.0 1.3 1 0 0 1 1 1 1 AsnC family HTH_AsnC-type PF13404.1 gi|433592117|ref|YP_007281613.1| - 9.3e-09 34.6 0.0 1.9e-08 33.7 0.0 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.7 gi|433592117|ref|YP_007281613.1| - 1.5e-08 34.1 0.1 7.1e-08 31.9 0.0 2.2 1 1 1 2 2 2 1 HTH domain HTH_IclR PF09339.5 gi|433592117|ref|YP_007281613.1| - 2.2e-07 30.3 0.0 4e-07 29.5 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_36 PF13730.1 gi|433592117|ref|YP_007281613.1| - 9.9e-07 28.8 0.0 2.4e-06 27.5 0.0 1.6 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_DeoR PF08220.7 gi|433592117|ref|YP_007281613.1| - 1.7e-06 27.4 0.0 3.5e-06 26.4 0.0 1.5 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain Fe_dep_repress PF01325.14 gi|433592117|ref|YP_007281613.1| - 8.6e-06 25.5 0.1 1.8e-05 24.5 0.0 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_20 PF12840.2 gi|433592117|ref|YP_007281613.1| - 1.1e-05 25.1 0.0 2.1e-05 24.2 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.17 gi|433592117|ref|YP_007281613.1| - 1.3e-05 24.8 0.0 3.8e-05 23.3 0.0 1.7 2 0 0 2 2 2 1 MarR family HTH_23 PF13384.1 gi|433592117|ref|YP_007281613.1| - 1.9e-05 24.1 0.0 3.5e-05 23.3 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain MarR_2 PF12802.2 gi|433592117|ref|YP_007281613.1| - 3.5e-05 23.4 0.0 0.00065 19.3 0.0 2.3 2 0 0 2 2 2 1 MarR family HTH_28 PF13518.1 gi|433592117|ref|YP_007281613.1| - 4.3e-05 23.4 0.0 7.4e-05 22.6 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|433592117|ref|YP_007281613.1| - 5.3e-05 22.7 0.0 0.0001 21.8 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family FaeA PF04703.7 gi|433592117|ref|YP_007281613.1| - 6.4e-05 23.0 0.0 0.00011 22.3 0.0 1.3 1 0 0 1 1 1 1 FaeA-like protein Rrf2 PF02082.15 gi|433592117|ref|YP_007281613.1| - 0.00016 21.6 0.0 0.0004 20.4 0.0 1.6 1 0 0 1 1 1 1 Transcriptional regulator LacI PF00356.16 gi|433592117|ref|YP_007281613.1| - 0.00018 21.0 0.1 0.0019 17.8 0.0 2.3 2 0 0 2 2 2 1 Bacterial regulatory proteins, lacI family TrmB PF01978.14 gi|433592117|ref|YP_007281613.1| - 0.0002 21.0 0.1 0.00036 20.1 0.1 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB GntR PF00392.16 gi|433592117|ref|YP_007281613.1| - 0.00038 19.8 0.5 0.00099 18.5 0.0 1.9 3 0 0 3 3 1 1 Bacterial regulatory proteins, gntR family HTH_45 PF14947.1 gi|433592117|ref|YP_007281613.1| - 0.0015 18.3 0.0 0.0027 17.5 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_27 PF13463.1 gi|433592117|ref|YP_007281613.1| - 0.0022 18.2 0.0 0.0044 17.3 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_29 PF13551.1 gi|433592117|ref|YP_007281613.1| - 0.0024 18.0 0.0 0.0031 17.6 0.0 1.4 1 1 0 1 1 1 1 Winged helix-turn helix TFIIE_alpha PF02002.12 gi|433592117|ref|YP_007281613.1| - 0.0069 15.8 0.1 0.01 15.3 0.0 1.4 1 1 0 1 1 1 1 TFIIE alpha subunit Sigma70_r4_2 PF08281.7 gi|433592117|ref|YP_007281613.1| - 0.0074 15.7 0.0 0.014 14.8 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 EAP30 PF04157.11 gi|433592117|ref|YP_007281613.1| - 0.0082 15.3 0.0 0.013 14.6 0.0 1.3 1 0 0 1 1 1 1 EAP30/Vps36 family HTH_Tnp_ISL3 PF13542.1 gi|433592117|ref|YP_007281613.1| - 0.012 14.7 0.0 0.02 14.0 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_6 PF01418.12 gi|433592117|ref|YP_007281613.1| - 0.015 15.0 0.0 0.027 14.2 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain, rpiR family FeoC PF09012.5 gi|433592117|ref|YP_007281613.1| - 0.015 15.0 0.0 0.025 14.2 0.0 1.4 1 0 0 1 1 1 0 FeoC like transcriptional regulator HTH_1 PF00126.22 gi|433592117|ref|YP_007281613.1| - 0.016 14.8 0.1 0.068 12.9 0.0 1.9 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_Mga PF08280.6 gi|433592117|ref|YP_007281613.1| - 0.02 14.6 0.0 0.033 13.9 0.0 1.4 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain HTH_34 PF13601.1 gi|433592117|ref|YP_007281613.1| - 0.02 14.8 0.0 0.039 13.9 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_10 PF04967.7 gi|433592117|ref|YP_007281613.1| - 0.02 14.4 0.0 0.044 13.3 0.0 1.6 1 0 0 1 1 1 0 HTH DNA binding domain HTH_Crp_2 PF13545.1 gi|433592117|ref|YP_007281613.1| - 0.021 14.5 0.0 0.047 13.4 0.0 1.6 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain TetR_N PF00440.18 gi|433592117|ref|YP_007281613.1| - 0.034 13.8 0.0 0.067 12.8 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family DUF2250 PF10007.4 gi|433592117|ref|YP_007281613.1| - 0.057 13.3 0.0 0.1 12.5 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_3 PF01381.17 gi|433592117|ref|YP_007281613.1| - 0.057 13.2 0.0 0.12 12.2 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix DUF4110 PF13422.1 gi|433592117|ref|YP_007281613.1| - 0.064 13.0 0.1 0.19 11.6 0.0 1.8 1 1 1 2 2 2 0 Domain of unknown function (DUF4110) DUF2913 PF11140.3 gi|433592117|ref|YP_007281613.1| - 0.073 12.3 0.0 0.089 12.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2913) RPA_C PF08784.6 gi|433592117|ref|YP_007281613.1| - 0.089 13.2 0.0 0.17 12.2 0.0 1.5 1 0 0 1 1 1 0 Replication protein A C terminal HTH_40 PF14493.1 gi|433592117|ref|YP_007281613.1| - 0.091 12.9 0.1 0.15 12.2 0.0 1.6 1 1 0 1 1 1 0 Helix-turn-helix domain GHMP_kinases_C PF08544.8 gi|433592117|ref|YP_007281613.1| - 0.12 12.5 0.2 5.8 7.1 0.0 2.7 2 1 1 3 3 3 0 GHMP kinases C terminal HTH_38 PF13936.1 gi|433592117|ref|YP_007281613.1| - 0.14 11.7 0.2 0.32 10.5 0.0 1.7 2 0 0 2 2 1 0 Helix-turn-helix domain TctB PF07331.6 gi|433592118|ref|YP_007281614.1| - 0.024 14.2 4.6 0.049 13.2 3.2 1.5 1 1 0 1 1 1 0 Tripartite tricarboxylate transporter TctB family CD20 PF04103.10 gi|433592118|ref|YP_007281614.1| - 0.097 12.6 1.8 0.13 12.2 1.3 1.1 1 0 0 1 1 1 0 CD20-like family CopD PF05425.8 gi|433592118|ref|YP_007281614.1| - 0.13 12.4 3.4 0.29 11.3 0.6 2.0 2 0 0 2 2 2 0 Copper resistance protein D PepSY_TM PF03929.11 gi|433592118|ref|YP_007281614.1| - 0.21 12.0 0.0 0.21 12.0 0.0 3.5 3 1 0 3 3 3 0 PepSY-associated TM helix Colicin_V PF02674.11 gi|433592118|ref|YP_007281614.1| - 0.23 11.2 3.2 1.6 8.5 2.2 1.9 1 1 0 1 1 1 0 Colicin V production protein DUF2910 PF11139.3 gi|433592118|ref|YP_007281614.1| - 0.44 9.6 6.2 1.2 8.2 3.6 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF2910) DUF4131 PF13567.1 gi|433592118|ref|YP_007281614.1| - 0.45 9.9 6.8 1.8 7.9 4.7 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4131) DUF3325 PF11804.3 gi|433592118|ref|YP_007281614.1| - 0.76 9.7 9.2 0.11 12.4 1.8 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3325) DUF202 PF02656.10 gi|433592118|ref|YP_007281614.1| - 8.9 6.6 7.0 2.2 8.5 1.4 2.2 2 1 0 2 2 2 0 Domain of unknown function (DUF202) TPP_enzyme_C PF02775.16 gi|433592119|ref|YP_007281615.1| - 1.5e-31 108.9 0.1 2.4e-31 108.4 0.0 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.14 gi|433592120|ref|YP_007281616.1| - 2.5e-50 171.1 0.0 5.8e-50 169.9 0.0 1.6 1 1 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.13 gi|433592120|ref|YP_007281616.1| - 6.3e-46 156.4 0.0 1.4e-45 155.3 0.0 1.5 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_N PF02776.13 gi|433592120|ref|YP_007281616.1| - 0.0025 17.3 0.1 0.0059 16.1 0.1 1.6 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Transketolase_C PF02780.15 gi|433592120|ref|YP_007281616.1| - 0.052 13.4 0.0 0.14 12.0 0.0 1.7 1 0 0 1 1 1 0 Transketolase, C-terminal domain PHP PF02811.14 gi|433592121|ref|YP_007281617.1| - 1.2e-07 31.6 0.0 3e-07 30.4 0.0 1.6 1 1 0 2 2 2 1 PHP domain DUF162 PF02589.10 gi|433592122|ref|YP_007281618.1| - 7.4e-35 120.1 0.8 8.6e-35 119.9 0.5 1.2 1 0 0 1 1 1 1 Uncharacterised ACR, YkgG family COG1556 OKR_DC_1_N PF03709.10 gi|433592122|ref|YP_007281618.1| - 0.002 18.1 0.2 0.0072 16.3 0.0 2.0 3 0 0 3 3 3 1 Orn/Lys/Arg decarboxylase, N-terminal domain YcaO PF02624.11 gi|433592122|ref|YP_007281618.1| - 0.0051 16.3 0.1 0.0078 15.7 0.1 1.3 1 0 0 1 1 1 1 YcaO-like family Secretin_N PF03958.12 gi|433592122|ref|YP_007281618.1| - 0.11 12.7 2.0 0.13 12.5 0.2 2.1 2 1 0 2 2 2 0 Bacterial type II/III secretion system short domain LisH PF08513.6 gi|433592123|ref|YP_007281619.1| - 0.031 14.0 0.0 0.083 12.6 0.0 1.8 1 0 0 1 1 1 0 LisH UbiD PF01977.11 gi|433592124|ref|YP_007281620.1| - 9.9e-97 323.9 0.0 1.2e-96 323.6 0.0 1.0 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase UbiD PF01977.11 gi|433592125|ref|YP_007281621.1| - 2.3e-18 65.8 0.0 2e-17 62.8 0.0 2.0 1 1 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase AMP-binding PF00501.23 gi|433592126|ref|YP_007281622.1| - 8.7e-92 307.6 0.0 1.1e-91 307.3 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|433592126|ref|YP_007281622.1| - 4e-19 69.3 1.0 8.6e-19 68.2 0.7 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Acyl-CoA_dh_1 PF00441.19 gi|433592127|ref|YP_007281623.1| - 3.3e-31 108.4 1.6 6.4e-31 107.4 1.1 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|433592127|ref|YP_007281623.1| - 2.2e-24 86.2 6.0 2.2e-24 86.2 4.1 1.9 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.14 gi|433592127|ref|YP_007281623.1| - 1.3e-17 62.9 1.8 1.5e-17 62.7 0.2 1.9 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.6 gi|433592127|ref|YP_007281623.1| - 7.3e-17 61.8 3.0 1.6e-16 60.7 2.1 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain CPSase_L_D2 PF02786.12 gi|433592128|ref|YP_007281624.1| - 6e-77 257.6 0.1 9.4e-77 257.0 0.1 1.3 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_chain PF00289.17 gi|433592128|ref|YP_007281624.1| - 1.2e-41 141.2 0.0 4.3e-41 139.4 0.0 2.0 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, N-terminal domain Biotin_carb_C PF02785.14 gi|433592128|ref|YP_007281624.1| - 1e-35 121.9 0.0 3.2e-35 120.3 0.0 1.9 1 0 0 1 1 1 1 Biotin carboxylase C-terminal domain Biotin_lipoyl PF00364.17 gi|433592128|ref|YP_007281624.1| - 1e-18 66.7 2.5 1e-18 66.7 1.8 2.4 3 0 0 3 3 2 1 Biotin-requiring enzyme ATP-grasp_4 PF13535.1 gi|433592128|ref|YP_007281624.1| - 1e-17 64.4 1.4 3.5e-17 62.7 0.1 2.1 2 0 0 2 2 2 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|433592128|ref|YP_007281624.1| - 5.1e-15 55.0 0.0 1.5e-14 53.5 0.0 1.6 1 1 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon Biotin_lipoyl_2 PF13533.1 gi|433592128|ref|YP_007281624.1| - 2.2e-11 43.2 0.2 6.3e-06 25.7 0.0 3.0 2 1 1 3 3 3 2 Biotin-lipoyl like Dala_Dala_lig_C PF07478.8 gi|433592128|ref|YP_007281624.1| - 1.1e-09 37.9 0.0 2.1e-09 37.0 0.0 1.4 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus ATP-grasp PF02222.17 gi|433592128|ref|YP_007281624.1| - 1.4e-09 37.4 0.1 3.3e-09 36.3 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp domain HlyD PF00529.15 gi|433592128|ref|YP_007281624.1| - 3.4e-05 23.3 0.2 0.0027 17.0 0.0 2.4 1 1 1 2 2 2 1 HlyD family secretion protein HlyD_3 PF13437.1 gi|433592128|ref|YP_007281624.1| - 0.0001 22.6 1.0 0.82 10.0 0.0 3.2 3 0 0 3 3 3 2 HlyD family secretion protein HlyD_2 PF12700.2 gi|433592128|ref|YP_007281624.1| - 0.00031 20.0 0.1 0.0062 15.7 0.0 2.3 1 1 1 2 2 2 1 HlyD family secretion protein ATP-grasp_3 PF02655.9 gi|433592128|ref|YP_007281624.1| - 0.00035 20.4 0.0 0.00059 19.7 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain GARS_A PF01071.14 gi|433592128|ref|YP_007281624.1| - 0.00091 18.8 0.0 0.002 17.7 0.0 1.6 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain GCV_H PF01597.14 gi|433592128|ref|YP_007281624.1| - 0.0048 16.5 0.7 0.011 15.3 0.5 1.6 1 0 0 1 1 1 1 Glycine cleavage H-protein PTS_EIIA_1 PF00358.15 gi|433592128|ref|YP_007281624.1| - 0.0054 16.2 1.5 0.068 12.7 0.1 3.0 2 1 1 3 3 3 1 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 RnfC_N PF13375.1 gi|433592128|ref|YP_007281624.1| - 0.031 14.0 2.1 0.063 13.0 0.3 2.3 3 0 0 3 3 2 0 RnfC Barrel sandwich hybrid domain Carboxyl_trans PF01039.17 gi|433592129|ref|YP_007281625.1| - 4.8e-131 437.4 0.0 6.2e-131 437.1 0.0 1.0 1 0 0 1 1 1 1 Carboxyl transferase domain DUF336 PF03928.9 gi|433592129|ref|YP_007281625.1| - 0.06 13.1 0.4 0.4 10.4 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF336) MaoC_dehydratas PF01575.14 gi|433592130|ref|YP_007281626.1| - 9.9e-24 83.0 0.1 1.3e-23 82.6 0.1 1.1 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.1 gi|433592130|ref|YP_007281626.1| - 0.00036 20.3 0.2 0.0013 18.4 0.1 1.8 1 1 0 1 1 1 1 N-terminal half of MaoC dehydratase Methyltransf_11 PF08241.7 gi|433592131|ref|YP_007281627.1| - 3e-18 66.1 0.0 6.7e-18 64.9 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|433592131|ref|YP_007281627.1| - 5.6e-10 39.4 0.0 2.7e-09 37.2 0.0 2.1 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|433592131|ref|YP_007281627.1| - 8.9e-10 38.5 0.0 1.1e-09 38.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|433592131|ref|YP_007281627.1| - 9.9e-09 34.9 0.0 3.2e-08 33.3 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|433592131|ref|YP_007281627.1| - 1.9e-07 31.4 0.0 3.9e-07 30.4 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|433592131|ref|YP_007281627.1| - 3e-07 31.0 0.1 1.9e-06 28.3 0.0 2.3 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|433592131|ref|YP_007281627.1| - 1e-06 28.0 0.0 2.6e-06 26.7 0.0 1.6 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family RrnaAD PF00398.15 gi|433592131|ref|YP_007281627.1| - 5.9e-05 22.2 0.0 8.3e-05 21.7 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_26 PF13659.1 gi|433592131|ref|YP_007281627.1| - 0.00026 21.0 1.2 0.00026 21.0 0.9 2.5 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_8 PF05148.10 gi|433592131|ref|YP_007281627.1| - 0.0048 16.5 0.0 0.0066 16.1 0.0 1.2 1 0 0 1 1 1 1 Hypothetical methyltransferase MTS PF05175.9 gi|433592131|ref|YP_007281627.1| - 0.051 12.9 0.1 0.17 11.2 0.0 1.8 2 0 0 2 2 2 0 Methyltransferase small domain HpcH_HpaI PF03328.9 gi|433592132|ref|YP_007281628.1| - 1.1e-57 194.4 4.2 1.4e-57 194.1 2.9 1.1 1 0 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family C-C_Bond_Lyase PF15617.1 gi|433592132|ref|YP_007281628.1| - 9.2e-15 54.2 0.0 3.8e-09 35.8 0.0 2.1 1 1 1 2 2 2 2 C-C_Bond_Lyase of the TIM-Barrel fold PK PF00224.16 gi|433592132|ref|YP_007281628.1| - 0.0012 17.4 0.0 0.0019 16.8 0.0 1.3 1 0 0 1 1 1 1 Pyruvate kinase, barrel domain PadR PF03551.9 gi|433592133|ref|YP_007281629.1| - 2.7e-16 59.1 1.4 3.6e-16 58.6 1.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_45 PF14947.1 gi|433592133|ref|YP_007281629.1| - 0.0028 17.4 0.1 0.0037 17.0 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_27 PF13463.1 gi|433592133|ref|YP_007281629.1| - 0.0095 16.2 0.0 0.014 15.6 0.0 1.4 1 1 0 1 1 1 1 Winged helix DNA-binding domain DUF3886 PF13025.1 gi|433592133|ref|YP_007281629.1| - 0.034 14.0 0.4 0.058 13.3 0.1 1.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3886) DUF1495 PF07381.6 gi|433592133|ref|YP_007281629.1| - 0.053 13.1 0.0 0.079 12.6 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) TetR_C_6 PF13977.1 gi|433592136|ref|YP_007281632.1| - 2.9e-17 62.7 1.5 2.9e-17 62.7 1.0 1.8 2 0 0 2 2 2 1 Bacterial transcriptional repressor TetR_N PF00440.18 gi|433592136|ref|YP_007281632.1| - 4.7e-11 42.1 0.6 8.2e-11 41.3 0.4 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family CorA PF01544.13 gi|433592136|ref|YP_007281632.1| - 0.036 13.1 0.7 0.04 12.9 0.5 1.2 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein TrbH PF07283.6 gi|433592136|ref|YP_007281632.1| - 0.036 13.9 0.0 0.2 11.4 0.0 1.9 2 0 0 2 2 2 0 Conjugal transfer protein TrbH TetR_C_5 PF08360.6 gi|433592136|ref|YP_007281632.1| - 0.04 13.8 0.0 0.068 13.1 0.0 1.4 1 1 0 1 1 1 0 QacR-like protein, C-terminal region zf-ribbon_3 PF13248.1 gi|433592137|ref|YP_007281633.1| - 2.6e-05 23.2 2.1 4e-05 22.6 1.5 1.3 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|433592137|ref|YP_007281633.1| - 7.9e-05 22.0 2.0 0.00012 21.4 1.4 1.2 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|433592137|ref|YP_007281633.1| - 0.00015 21.4 1.3 0.00021 21.0 0.9 1.2 1 0 0 1 1 1 1 Double zinc ribbon TM2 PF05154.11 gi|433592137|ref|YP_007281633.1| - 0.0013 18.8 0.2 0.0027 17.8 0.1 1.5 1 0 0 1 1 1 1 TM2 domain TadE PF07811.7 gi|433592137|ref|YP_007281633.1| - 0.0043 16.8 0.2 0.011 15.5 0.1 1.7 1 0 0 1 1 1 1 TadE-like protein zf-RING_3 PF14369.1 gi|433592137|ref|YP_007281633.1| - 0.053 13.5 7.1 1.5 8.8 0.8 2.2 2 0 0 2 2 2 0 zinc-finger Tad PF13400.1 gi|433592137|ref|YP_007281633.1| - 0.12 12.4 4.2 1.8 8.6 0.1 2.6 2 0 0 2 2 2 0 Putative Flp pilus-assembly TadE/G-like DUF2878 PF11086.3 gi|433592137|ref|YP_007281633.1| - 0.13 12.2 2.2 0.17 11.8 1.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2878) DUF454 PF04304.8 gi|433592137|ref|YP_007281633.1| - 0.63 10.1 4.7 5.7 7.0 0.2 2.6 1 1 2 3 3 3 0 Protein of unknown function (DUF454) Zn-ribbon_8 PF09723.5 gi|433592137|ref|YP_007281633.1| - 0.87 9.5 3.4 0.4 10.6 0.9 1.6 1 1 0 1 1 1 0 Zinc ribbon domain Bac_luciferase PF00296.15 gi|433592138|ref|YP_007281634.1| - 3.1e-32 111.9 11.0 3.9e-32 111.5 7.6 1.1 1 0 0 1 1 1 1 Luciferase-like monooxygenase Lon_C PF05362.8 gi|433592139|ref|YP_007281635.1| - 2.2e-35 121.8 3.7 3.3e-35 121.2 2.6 1.3 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain AAA_32 PF13654.1 gi|433592139|ref|YP_007281635.1| - 1.6e-28 99.6 0.0 1.9e-21 76.3 0.0 2.2 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.16 gi|433592139|ref|YP_007281635.1| - 2.1e-17 62.9 0.1 5.5e-10 38.7 0.0 2.3 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.21 gi|433592139|ref|YP_007281635.1| - 3.3e-15 55.9 0.0 3.7e-09 36.2 0.0 2.4 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_5 PF07728.9 gi|433592139|ref|YP_007281635.1| - 1.5e-10 40.9 0.0 0.00066 19.4 0.0 2.7 3 0 0 3 3 2 2 AAA domain (dynein-related subfamily) ChlI PF13541.1 gi|433592139|ref|YP_007281635.1| - 2.1e-10 40.1 0.4 5.1e-10 38.9 0.3 1.6 1 0 0 1 1 1 1 Subunit ChlI of Mg-chelatase MCM PF00493.18 gi|433592139|ref|YP_007281635.1| - 1.3e-08 34.0 0.5 0.054 12.2 0.0 3.2 3 0 0 3 3 3 3 MCM2/3/5 family RuvB_N PF05496.7 gi|433592139|ref|YP_007281635.1| - 2.3e-06 26.8 0.1 0.00074 18.6 0.0 2.3 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus AAA PF00004.24 gi|433592139|ref|YP_007281635.1| - 4.2e-06 27.0 0.0 0.044 13.9 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) Sigma54_activ_2 PF14532.1 gi|433592139|ref|YP_007281635.1| - 1.7e-05 24.9 0.0 0.099 12.6 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain TIP49 PF06068.8 gi|433592139|ref|YP_007281635.1| - 9.7e-05 21.2 0.1 0.014 14.1 0.0 2.3 2 0 0 2 2 2 1 TIP49 C-terminus AAA_3 PF07726.6 gi|433592139|ref|YP_007281635.1| - 0.0003 20.4 0.1 0.56 9.8 0.0 2.7 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|433592139|ref|YP_007281635.1| - 0.0006 19.9 0.0 0.015 15.4 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|433592139|ref|YP_007281635.1| - 0.0017 18.0 0.0 0.0052 16.5 0.0 1.9 1 0 0 1 1 1 1 Part of AAA domain PhoH PF02562.11 gi|433592139|ref|YP_007281635.1| - 0.0032 16.7 0.1 0.0083 15.3 0.0 1.7 2 0 0 2 2 2 1 PhoH-like protein AAA_18 PF13238.1 gi|433592139|ref|YP_007281635.1| - 0.0037 17.5 0.0 0.013 15.7 0.0 2.0 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|433592139|ref|YP_007281635.1| - 0.0042 16.9 0.1 0.039 13.8 0.0 2.3 2 0 0 2 2 2 1 AAA domain T2SE PF00437.15 gi|433592139|ref|YP_007281635.1| - 0.0079 15.1 0.0 0.032 13.1 0.0 2.0 3 0 0 3 3 3 1 Type II/IV secretion system protein AAA_30 PF13604.1 gi|433592139|ref|YP_007281635.1| - 0.009 15.6 0.0 0.039 13.5 0.0 1.9 2 0 0 2 2 2 1 AAA domain NACHT PF05729.7 gi|433592139|ref|YP_007281635.1| - 0.012 15.2 0.0 0.034 13.8 0.0 1.8 2 0 0 2 2 2 0 NACHT domain DUF815 PF05673.8 gi|433592139|ref|YP_007281635.1| - 0.013 14.4 0.0 0.028 13.3 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_2 PF07724.9 gi|433592139|ref|YP_007281635.1| - 0.013 15.4 0.0 2.6 7.9 0.0 2.5 2 0 0 2 2 2 0 AAA domain (Cdc48 subfamily) Zeta_toxin PF06414.7 gi|433592139|ref|YP_007281635.1| - 0.013 14.5 0.0 0.037 13.1 0.0 1.7 2 0 0 2 2 2 0 Zeta toxin AAA_PrkA PF08298.6 gi|433592139|ref|YP_007281635.1| - 0.021 13.5 0.1 0.58 8.7 0.0 2.1 2 0 0 2 2 2 0 PrkA AAA domain ABC_tran PF00005.22 gi|433592139|ref|YP_007281635.1| - 0.033 14.4 0.0 0.1 12.8 0.0 1.8 1 0 0 1 1 1 0 ABC transporter IstB_IS21 PF01695.12 gi|433592139|ref|YP_007281635.1| - 0.034 13.5 0.0 0.072 12.5 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein TrwB_AAD_bind PF10412.4 gi|433592139|ref|YP_007281635.1| - 0.04 12.5 0.0 0.069 11.7 0.0 1.3 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain Parvo_NS1 PF01057.12 gi|433592139|ref|YP_007281635.1| - 0.24 10.2 0.0 0.41 9.4 0.0 1.2 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 O-antigen_lig PF13425.1 gi|433592139|ref|YP_007281635.1| - 1.5 8.7 6.0 2.6 8.0 4.2 1.3 1 0 0 1 1 1 0 O-antigen ligase like membrane protein TetR_C_6 PF13977.1 gi|433592140|ref|YP_007281636.1| - 8.6e-12 45.1 0.9 1.5e-11 44.3 0.6 1.4 1 0 0 1 1 1 1 Bacterial transcriptional repressor TetR_N PF00440.18 gi|433592140|ref|YP_007281636.1| - 1e-08 34.6 0.0 1.9e-08 33.8 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family DUF3139 PF11337.3 gi|433592140|ref|YP_007281636.1| - 0.053 13.7 0.0 0.094 13.0 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3139) TetR_C_9 PF14514.1 gi|433592140|ref|YP_007281636.1| - 0.076 12.8 0.0 0.14 12.0 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator, TetR, C-terminal CSS-motif PF12792.2 gi|433592140|ref|YP_007281636.1| - 0.11 11.8 0.0 0.17 11.2 0.0 1.3 1 0 0 1 1 1 0 CSS motif domain associated with EAL MMPL PF03176.10 gi|433592141|ref|YP_007281637.1| - 3.7e-37 127.8 35.9 3.7e-20 71.9 13.1 4.5 3 1 2 5 5 5 2 MMPL family Sterol-sensing PF12349.3 gi|433592141|ref|YP_007281637.1| - 1.5e-10 40.7 11.6 9e-06 25.2 1.2 2.5 2 0 0 2 2 2 2 Sterol-sensing domain of SREBP cleavage-activation Patched PF02460.13 gi|433592141|ref|YP_007281637.1| - 1.1e-06 26.9 15.5 8e-06 24.0 4.3 3.3 3 1 1 4 4 4 3 Patched family SecD_SecF PF02355.11 gi|433592141|ref|YP_007281637.1| - 6.7e-05 22.1 4.9 6.7e-05 22.1 3.4 2.5 2 0 0 2 2 2 1 Protein export membrane protein ACR_tran PF00873.14 gi|433592141|ref|YP_007281637.1| - 0.00099 16.6 3.7 0.00099 16.6 2.5 2.7 3 0 0 3 3 3 2 AcrB/AcrD/AcrF family DUF2749 PF10907.3 gi|433592141|ref|YP_007281637.1| - 0.74 9.7 3.7 0.81 9.6 0.1 3.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2749) Toxin_39 PF15500.1 gi|433592141|ref|YP_007281637.1| - 0.75 9.9 3.4 0.54 10.4 0.7 2.1 2 0 0 2 2 2 0 Putative RNase-like toxin Chorismate_synt PF01264.16 gi|433592142|ref|YP_007281638.1| - 3.1e-126 420.5 0.0 3.6e-126 420.3 0.0 1.0 1 0 0 1 1 1 1 Chorismate synthase MFS_1 PF07690.11 gi|433592143|ref|YP_007281639.1| - 1.3e-58 198.3 66.1 2.8e-46 157.8 24.5 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily LacY_symp PF01306.14 gi|433592143|ref|YP_007281639.1| - 0.00037 19.1 13.2 0.0081 14.7 2.2 2.7 3 0 0 3 3 3 2 LacY proton/sugar symporter Sugar_tr PF00083.19 gi|433592143|ref|YP_007281639.1| - 0.0023 16.5 36.1 0.013 14.1 1.7 3.8 2 2 1 3 3 3 2 Sugar (and other) transporter MFS_1_like PF12832.2 gi|433592143|ref|YP_007281639.1| - 0.0064 16.2 10.3 0.36 10.6 0.0 4.2 3 2 1 4 4 4 2 MFS_1 like family COX14 PF14880.1 gi|433592143|ref|YP_007281639.1| - 2.2 7.9 5.0 18 5.0 0.4 3.1 2 0 0 2 2 2 0 Cytochrome oxidase c assembly DoxX PF07681.7 gi|433592144|ref|YP_007281640.1| - 2.9e-10 40.4 13.1 2.9e-10 40.4 9.1 2.1 1 1 1 2 2 2 1 DoxX MauE PF07291.6 gi|433592144|ref|YP_007281640.1| - 0.013 15.1 0.2 0.025 14.1 0.1 1.5 1 0 0 1 1 1 0 Methylamine utilisation protein MauE DoxD PF04173.8 gi|433592144|ref|YP_007281640.1| - 0.17 11.5 7.4 0.27 10.8 5.1 1.4 1 1 0 1 1 1 0 TQO small subunit DoxD Thiolase_N PF00108.18 gi|433592145|ref|YP_007281641.1| - 6e-75 251.6 2.6 8.9e-75 251.0 1.8 1.2 1 0 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.13 gi|433592145|ref|YP_007281641.1| - 1.5e-41 140.7 0.1 2.9e-41 139.7 0.1 1.5 1 0 0 1 1 1 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.21 gi|433592145|ref|YP_007281641.1| - 6.1e-09 35.7 0.4 1.2e-08 34.7 0.3 1.5 1 0 0 1 1 1 1 Beta-ketoacyl synthase, N-terminal domain ACP_syn_III PF08545.5 gi|433592145|ref|YP_007281641.1| - 0.61 9.7 4.7 1.7 8.3 0.2 2.7 3 0 0 3 3 3 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III EPSP_synthase PF00275.15 gi|433592146|ref|YP_007281642.1| - 3e-106 355.3 0.0 3.7e-106 355.0 0.0 1.0 1 0 0 1 1 1 1 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) DUF2092 PF09865.4 gi|433592147|ref|YP_007281643.1| - 0.0094 15.0 0.0 0.017 14.2 0.0 1.3 1 0 0 1 1 1 1 Predicted periplasmic protein (DUF2092) Peptidase_M24 PF00557.19 gi|433592148|ref|YP_007281644.1| - 3.7e-43 147.5 2.5 5.8e-43 146.8 1.3 1.6 2 0 0 2 2 2 1 Metallopeptidase family M24 Creatinase_N PF01321.13 gi|433592148|ref|YP_007281644.1| - 5.4e-11 43.1 0.3 2.5e-08 34.4 0.0 2.4 1 1 1 2 2 2 2 Creatinase/Prolidase N-terminal domain Nitro_FeMo-Co PF02579.12 gi|433592148|ref|YP_007281644.1| - 0.059 13.4 0.1 0.26 11.3 0.0 2.1 2 0 0 2 2 2 0 Dinitrogenase iron-molybdenum cofactor CBM_4_9 PF02018.12 gi|433592149|ref|YP_007281645.1| - 0.019 14.9 0.1 0.042 13.8 0.0 1.5 1 1 1 2 2 2 0 Carbohydrate binding domain TAT_signal PF10518.4 gi|433592149|ref|YP_007281645.1| - 0.052 13.5 3.5 0.076 13.0 2.4 1.3 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Aldo_ket_red PF00248.16 gi|433592150|ref|YP_007281646.1| - 4.1e-75 252.2 0.0 5.3e-75 251.8 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family TrkA_N PF02254.13 gi|433592151|ref|YP_007281647.1| - 4.9e-37 126.4 11.5 8.5e-20 70.8 0.7 3.2 3 1 0 3 3 3 2 TrkA-N domain TrkA_C PF02080.16 gi|433592151|ref|YP_007281647.1| - 2.9e-24 84.4 3.5 1.5e-13 50.1 0.1 3.2 3 0 0 3 3 3 2 TrkA-C domain XdhC_C PF13478.1 gi|433592151|ref|YP_007281647.1| - 0.015 15.6 0.6 0.37 11.1 0.0 2.4 2 0 0 2 2 2 0 XdhC Rossmann domain Ion_trans_2 PF07885.11 gi|433592151|ref|YP_007281647.1| - 0.041 13.5 2.7 0.082 12.6 1.9 1.5 1 0 0 1 1 1 0 Ion channel Ion_trans PF00520.26 gi|433592151|ref|YP_007281647.1| - 0.19 10.9 1.4 0.3 10.2 1.0 1.2 1 0 0 1 1 1 0 Ion transport protein Bac_luciferase PF00296.15 gi|433592152|ref|YP_007281648.1| - 4.6e-58 196.7 4.2 6.4e-58 196.2 2.9 1.2 1 0 0 1 1 1 1 Luciferase-like monooxygenase DUF4142 PF13628.1 gi|433592152|ref|YP_007281648.1| - 0.034 14.1 0.1 0.054 13.5 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4142) OPA3 PF07047.7 gi|433592152|ref|YP_007281648.1| - 0.061 13.1 0.0 0.086 12.6 0.0 1.2 1 0 0 1 1 1 0 Optic atrophy 3 protein (OPA3) ABC_tran PF00005.22 gi|433592153|ref|YP_007281649.1| - 1.9e-27 96.2 0.0 3.4e-27 95.3 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|433592153|ref|YP_007281649.1| - 1.9e-14 54.3 0.0 1.9e-08 34.6 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|433592153|ref|YP_007281649.1| - 1.4e-05 25.1 0.1 2.7e-05 24.2 0.1 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.1 gi|433592153|ref|YP_007281649.1| - 0.00034 20.2 0.3 0.011 15.3 0.2 2.2 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|433592153|ref|YP_007281649.1| - 0.00091 18.7 0.1 0.0019 17.6 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain UPF0079 PF02367.12 gi|433592153|ref|YP_007281649.1| - 0.0023 17.5 0.1 0.0039 16.8 0.1 1.3 1 0 0 1 1 1 1 Uncharacterised P-loop hydrolase UPF0079 AAA_23 PF13476.1 gi|433592153|ref|YP_007281649.1| - 0.0029 17.9 0.2 0.0043 17.4 0.1 1.1 1 0 0 1 1 1 1 AAA domain Mg_chelatase PF01078.16 gi|433592153|ref|YP_007281649.1| - 0.0043 16.2 0.0 0.0077 15.4 0.0 1.4 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_15 PF13175.1 gi|433592153|ref|YP_007281649.1| - 0.0048 16.0 0.0 0.69 8.8 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain IstB_IS21 PF01695.12 gi|433592153|ref|YP_007281649.1| - 0.0054 16.1 0.2 0.61 9.4 0.1 2.1 2 0 0 2 2 2 1 IstB-like ATP binding protein cobW PF02492.14 gi|433592153|ref|YP_007281649.1| - 0.014 14.8 0.0 0.031 13.7 0.0 1.6 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_22 PF13401.1 gi|433592153|ref|YP_007281649.1| - 0.022 14.9 0.0 0.034 14.2 0.0 1.5 1 1 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|433592153|ref|YP_007281649.1| - 0.022 13.9 0.1 0.036 13.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_33 PF13671.1 gi|433592153|ref|YP_007281649.1| - 0.023 14.5 0.0 0.053 13.4 0.0 1.6 2 0 0 2 2 1 0 AAA domain AAA_5 PF07728.9 gi|433592153|ref|YP_007281649.1| - 0.027 14.2 0.0 0.55 9.9 0.0 2.3 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_28 PF13521.1 gi|433592153|ref|YP_007281649.1| - 0.031 14.2 1.0 0.053 13.4 0.2 1.8 2 0 0 2 2 1 0 AAA domain SbcCD_C PF13558.1 gi|433592153|ref|YP_007281649.1| - 0.046 13.6 0.0 0.16 11.8 0.0 1.9 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA PF00004.24 gi|433592153|ref|YP_007281649.1| - 0.047 13.8 0.0 0.11 12.6 0.0 1.6 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) SMC_N PF02463.14 gi|433592153|ref|YP_007281649.1| - 0.049 12.8 0.0 0.47 9.6 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_25 PF13481.1 gi|433592153|ref|YP_007281649.1| - 0.05 12.9 0.8 0.16 11.3 0.5 1.9 1 1 0 1 1 1 0 AAA domain Miro PF08477.8 gi|433592153|ref|YP_007281649.1| - 0.066 13.7 0.0 0.13 12.7 0.0 1.4 1 0 0 1 1 1 0 Miro-like protein AAA_19 PF13245.1 gi|433592153|ref|YP_007281649.1| - 0.07 12.8 2.2 0.18 11.5 0.3 2.3 2 0 0 2 2 2 0 Part of AAA domain ATP_bind_1 PF03029.12 gi|433592153|ref|YP_007281649.1| - 0.084 12.3 0.1 0.14 11.6 0.1 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_17 PF13207.1 gi|433592153|ref|YP_007281649.1| - 0.085 13.6 0.2 0.19 12.5 0.1 1.8 1 1 0 1 1 1 0 AAA domain MobB PF03205.9 gi|433592153|ref|YP_007281649.1| - 0.093 12.4 0.1 0.19 11.4 0.1 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B NACHT PF05729.7 gi|433592153|ref|YP_007281649.1| - 0.096 12.3 0.0 0.18 11.4 0.0 1.4 1 0 0 1 1 1 0 NACHT domain SRP54 PF00448.17 gi|433592153|ref|YP_007281649.1| - 0.11 11.9 0.0 0.18 11.2 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain PduV-EutP PF10662.4 gi|433592153|ref|YP_007281649.1| - 0.17 11.3 0.0 0.3 10.5 0.0 1.4 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation PhoH PF02562.11 gi|433592153|ref|YP_007281649.1| - 0.18 10.9 0.0 0.28 10.3 0.0 1.2 1 0 0 1 1 1 0 PhoH-like protein ABC2_membrane PF01061.19 gi|433592154|ref|YP_007281650.1| - 1.3e-25 89.7 7.6 2e-25 89.2 5.2 1.2 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|433592154|ref|YP_007281650.1| - 5.3e-13 48.7 3.3 5.3e-13 48.7 2.3 2.0 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|433592154|ref|YP_007281650.1| - 1.2e-06 27.5 6.4 1.2e-06 27.5 4.5 2.0 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|433592154|ref|YP_007281650.1| - 8.7e-05 21.7 10.8 0.00016 20.8 7.5 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein DUF2074 PF09847.4 gi|433592154|ref|YP_007281650.1| - 0.016 14.0 0.9 0.023 13.4 0.6 1.2 1 0 0 1 1 1 0 Predicted permease (DUF2074) DUF1616 PF07760.6 gi|433592154|ref|YP_007281650.1| - 2.1 7.3 6.2 4.4 6.3 4.3 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1616) TruD PF01142.13 gi|433592155|ref|YP_007281651.1| - 1.6e-90 303.4 0.0 4.3e-55 186.9 0.0 2.0 1 1 1 2 2 2 2 tRNA pseudouridine synthase D (TruD) R3H PF01424.17 gi|433592155|ref|YP_007281651.1| - 0.2 11.3 1.1 0.78 9.4 0.2 2.2 2 0 0 2 2 2 0 R3H domain DUF2874 PF11396.3 gi|433592156|ref|YP_007281652.1| - 0.21 11.5 0.8 0.72 9.8 0.4 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2874) DUF2231 PF09990.4 gi|433592157|ref|YP_007281653.1| - 0.029 14.6 1.6 0.046 14.0 1.1 1.3 1 1 0 1 1 1 0 Predicted membrane protein (DUF2231) ABC2_membrane_3 PF12698.2 gi|433592158|ref|YP_007281654.1| - 1.4 7.8 13.1 2.1 7.2 9.1 1.3 1 1 0 1 1 1 0 ABC-2 family transporter protein SurE PF01975.12 gi|433592159|ref|YP_007281655.1| - 3.8e-50 169.9 0.0 5.2e-50 169.4 0.0 1.1 1 0 0 1 1 1 1 Survival protein SurE T2SE PF00437.15 gi|433592160|ref|YP_007281656.1| - 7.8e-46 156.1 0.0 1.1e-45 155.6 0.0 1.1 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.1 gi|433592160|ref|YP_007281656.1| - 1.4e-07 30.9 0.1 2.6e-07 30.0 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain FtsK_SpoIIIE PF01580.13 gi|433592160|ref|YP_007281656.1| - 0.0053 16.2 0.0 0.013 15.0 0.0 1.6 1 0 0 1 1 1 1 FtsK/SpoIIIE family ABC_tran PF00005.22 gi|433592160|ref|YP_007281656.1| - 0.013 15.8 0.0 0.027 14.7 0.0 1.5 1 0 0 1 1 1 0 ABC transporter PCMT PF01135.14 gi|433592160|ref|YP_007281656.1| - 0.026 14.0 0.0 0.057 12.9 0.0 1.5 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) AAA_19 PF13245.1 gi|433592160|ref|YP_007281656.1| - 0.046 13.4 0.0 0.16 11.7 0.0 1.9 1 0 0 1 1 1 0 Part of AAA domain AAA_22 PF13401.1 gi|433592160|ref|YP_007281656.1| - 0.076 13.1 0.0 0.2 11.7 0.0 1.7 1 0 0 1 1 1 0 AAA domain T2SF PF00482.18 gi|433592161|ref|YP_007281657.1| - 2.9e-26 91.7 8.9 4.6e-13 49.1 0.1 3.0 3 0 0 3 3 3 2 Type II secretion system (T2SS), protein F DUF3357 PF11837.3 gi|433592161|ref|YP_007281657.1| - 0.43 10.4 1.6 2.6 7.9 0.0 2.7 2 0 0 2 2 2 0 Domain of unknown function (DUF3357) DUF1628 PF07790.6 gi|433592162|ref|YP_007281658.1| - 0.00025 21.7 0.1 0.0011 19.6 0.0 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF1628) Big_1 PF02369.11 gi|433592162|ref|YP_007281658.1| - 0.0034 17.2 5.5 0.0066 16.3 0.1 3.5 3 1 0 4 4 4 1 Bacterial Ig-like domain (group 1) Big_3_4 PF13754.1 gi|433592162|ref|YP_007281658.1| - 0.045 14.0 0.3 0.045 14.0 0.2 6.1 4 1 1 5 5 5 0 Bacterial Ig-like domain (group 3) DUF2103 PF09876.4 gi|433592163|ref|YP_007281659.1| - 1.1e-43 147.1 0.3 1.8e-43 146.5 0.2 1.3 1 0 0 1 1 1 1 Predicted metal-binding protein (DUF2103) Ribosomal_L37ae PF01780.14 gi|433592165|ref|YP_007281661.1| - 4.6e-25 87.3 0.2 5.2e-25 87.1 0.1 1.0 1 0 0 1 1 1 1 Ribosomal L37ae protein family DNA_RNApol_7kD PF03604.8 gi|433592166|ref|YP_007281662.1| - 3.1e-10 39.3 6.2 3.7e-10 39.0 4.3 1.1 1 0 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit HypA PF01155.14 gi|433592166|ref|YP_007281662.1| - 0.00053 19.6 0.5 0.00055 19.6 0.4 1.1 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family zf-ribbon_3 PF13248.1 gi|433592166|ref|YP_007281662.1| - 0.0006 18.9 0.2 0.024 13.8 0.0 2.0 2 0 0 2 2 2 1 zinc-ribbon domain DUF329 PF03884.9 gi|433592166|ref|YP_007281662.1| - 0.0011 18.5 0.6 0.46 10.0 0.0 2.1 1 1 1 2 2 2 2 Domain of unknown function (DUF329) Zn_Tnp_IS1595 PF12760.2 gi|433592166|ref|YP_007281662.1| - 0.0033 17.1 4.6 0.095 12.5 0.1 2.1 2 0 0 2 2 2 1 Transposase zinc-ribbon domain Cys_rich_CPXG PF14255.1 gi|433592166|ref|YP_007281662.1| - 0.0075 16.0 0.2 0.029 14.1 0.0 2.0 2 0 0 2 2 2 1 Cysteine-rich CPXCG A2L_zn_ribbon PF08792.5 gi|433592166|ref|YP_007281662.1| - 0.0078 15.6 1.7 0.35 10.3 0.0 2.1 1 1 1 2 2 2 1 A2L zinc ribbon domain zf-CHCC PF10276.4 gi|433592166|ref|YP_007281662.1| - 0.008 15.9 0.2 0.013 15.2 0.1 1.4 1 0 0 1 1 1 1 Zinc-finger domain zinc_ribbon_2 PF13240.1 gi|433592166|ref|YP_007281662.1| - 0.012 15.0 3.9 0.093 12.2 2.7 2.0 1 1 0 1 1 1 0 zinc-ribbon domain DZR PF12773.2 gi|433592166|ref|YP_007281662.1| - 0.012 15.3 0.9 0.032 14.0 0.7 1.7 1 1 0 1 1 1 0 Double zinc ribbon Sgf11 PF08209.6 gi|433592166|ref|YP_007281662.1| - 0.02 14.2 3.0 0.52 9.6 0.2 2.2 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) DUF951 PF06107.6 gi|433592166|ref|YP_007281662.1| - 0.027 13.9 2.0 1.1 8.7 0.1 2.1 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF951) zf-ISL3 PF14690.1 gi|433592166|ref|YP_007281662.1| - 0.03 14.3 1.6 0.15 12.1 0.1 2.0 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Prok-RING_1 PF14446.1 gi|433592166|ref|YP_007281662.1| - 0.031 13.9 1.4 0.12 12.1 1.1 1.7 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 zf-Di19 PF05605.7 gi|433592166|ref|YP_007281662.1| - 0.039 14.0 0.2 0.61 10.2 0.0 2.0 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding CpXC PF14353.1 gi|433592166|ref|YP_007281662.1| - 0.044 13.7 1.6 1.3 8.9 0.1 2.0 1 1 1 2 2 2 0 CpXC protein zf-HIT PF04438.11 gi|433592166|ref|YP_007281662.1| - 0.048 13.2 3.8 0.81 9.3 0.5 2.0 2 0 0 2 2 2 0 HIT zinc finger OrfB_Zn_ribbon PF07282.6 gi|433592166|ref|YP_007281662.1| - 0.064 12.9 3.0 0.09 12.4 1.9 1.5 1 1 0 1 1 1 0 Putative transposase DNA-binding domain RNHCP PF12647.2 gi|433592166|ref|YP_007281662.1| - 0.075 12.8 0.6 0.11 12.3 0.4 1.3 1 1 0 1 1 1 0 RNHCP domain TF_Zn_Ribbon PF08271.7 gi|433592166|ref|YP_007281662.1| - 0.082 12.2 3.6 0.16 11.3 2.5 1.6 1 1 0 1 1 1 0 TFIIB zinc-binding TFIIS_C PF01096.13 gi|433592166|ref|YP_007281662.1| - 0.084 12.5 1.7 4.7 6.9 0.0 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zinc-ribbons_6 PF07191.7 gi|433592166|ref|YP_007281662.1| - 0.091 12.5 0.6 0.15 11.8 0.4 1.4 1 1 0 1 1 1 0 zinc-ribbons zf-C4_Topoisom PF01396.14 gi|433592166|ref|YP_007281662.1| - 0.093 12.2 1.5 0.49 9.9 0.1 2.0 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger Spt4 PF06093.8 gi|433592166|ref|YP_007281662.1| - 0.096 12.5 0.2 0.1 12.5 0.2 1.0 1 0 0 1 1 1 0 Spt4/RpoE2 zinc finger Lar_restr_allev PF14354.1 gi|433592166|ref|YP_007281662.1| - 0.1 12.9 0.7 0.28 11.5 0.0 1.8 1 1 0 1 1 1 0 Restriction alleviation protein Lar zf-AN1 PF01428.11 gi|433592166|ref|YP_007281662.1| - 0.1 12.4 1.4 0.29 11.0 1.1 1.7 1 1 1 2 2 2 0 AN1-like Zinc finger zf-C2H2_4 PF13894.1 gi|433592166|ref|YP_007281662.1| - 0.11 12.8 1.6 2.2 8.8 0.0 2.1 2 0 0 2 2 2 0 C2H2-type zinc finger Zn_ribbon_recom PF13408.1 gi|433592166|ref|YP_007281662.1| - 0.12 12.6 2.0 1.2 9.4 0.1 2.1 2 0 0 2 2 2 0 Recombinase zinc beta ribbon domain C1_1 PF00130.17 gi|433592166|ref|YP_007281662.1| - 0.12 12.0 0.6 0.16 11.7 0.4 1.3 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) TerY-C PF15616.1 gi|433592166|ref|YP_007281662.1| - 0.13 12.1 0.3 0.15 11.9 0.2 1.3 1 1 0 1 1 1 0 TerY-C metal binding domain zf-RING_3 PF14369.1 gi|433592166|ref|YP_007281662.1| - 0.19 11.7 2.1 0.32 11.0 1.5 1.4 1 0 0 1 1 1 0 zinc-finger DUF3268 PF11672.3 gi|433592166|ref|YP_007281662.1| - 0.21 11.6 1.0 2.7 8.1 0.0 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3268) zinc_ribbon_4 PF13717.1 gi|433592166|ref|YP_007281662.1| - 0.23 11.2 6.2 13 5.6 4.3 2.3 1 1 0 1 1 1 0 zinc-ribbon domain zf-TFIIB PF13453.1 gi|433592166|ref|YP_007281662.1| - 0.25 10.5 1.9 0.63 9.2 1.2 1.7 1 1 1 2 2 2 0 Transcription factor zinc-finger zinc_ribbon_5 PF13719.1 gi|433592166|ref|YP_007281662.1| - 0.27 10.8 6.4 17 5.1 4.5 2.3 1 1 0 1 1 1 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|433592166|ref|YP_007281662.1| - 0.67 9.9 5.2 5.3 7.0 3.6 2.0 1 1 0 1 1 1 0 Zinc ribbon domain zf-NADH-PPase PF09297.6 gi|433592166|ref|YP_007281662.1| - 0.72 9.4 0.1 0.72 9.4 0.0 2.1 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Mu-like_Com PF10122.4 gi|433592166|ref|YP_007281662.1| - 1.4 8.0 6.5 2.7 7.1 0.7 2.1 1 1 1 2 2 2 0 Mu-like prophage protein Com zf-C2H2 PF00096.21 gi|433592166|ref|YP_007281662.1| - 1.5 9.3 4.1 8.8 6.8 0.1 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type UPF0547 PF10571.4 gi|433592166|ref|YP_007281662.1| - 3.7 7.3 6.7 0.62 9.8 1.3 1.9 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Pcc1 PF09341.5 gi|433592167|ref|YP_007281663.1| - 2.8e-16 59.3 0.7 3.2e-16 59.1 0.5 1.0 1 0 0 1 1 1 1 Transcription factor Pcc1 DUF2243 PF10002.4 gi|433592168|ref|YP_007281664.1| - 9.4e-43 145.4 7.5 1.2e-42 145.1 5.2 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2243) Prefoldin_2 PF01920.15 gi|433592169|ref|YP_007281665.1| - 4.9e-25 87.3 19.2 5.5e-25 87.1 13.3 1.0 1 0 0 1 1 1 1 Prefoldin subunit DUF3584 PF12128.3 gi|433592169|ref|YP_007281665.1| - 0.00066 17.1 8.1 0.00082 16.8 5.6 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) Prefoldin PF02996.12 gi|433592169|ref|YP_007281665.1| - 0.00083 18.9 17.1 0.0012 18.4 3.9 2.7 1 1 2 3 3 3 1 Prefoldin subunit ALIX_LYPXL_bnd PF13949.1 gi|433592169|ref|YP_007281665.1| - 0.0014 17.6 8.4 0.002 17.1 5.8 1.2 1 0 0 1 1 1 1 ALIX V-shaped domain binding to HIV AAA_27 PF13514.1 gi|433592169|ref|YP_007281665.1| - 0.0015 16.3 8.5 0.0019 16.0 5.9 1.1 1 0 0 1 1 1 1 AAA domain Laminin_II PF06009.7 gi|433592169|ref|YP_007281665.1| - 0.0094 15.7 8.6 0.013 15.2 6.0 1.2 1 0 0 1 1 1 1 Laminin Domain II SASP PF00269.15 gi|433592169|ref|YP_007281665.1| - 0.015 15.1 1.5 0.052 13.4 0.7 2.1 1 1 1 2 2 2 0 Small, acid-soluble spore proteins, alpha/beta type PAF-AH_p_II PF03403.8 gi|433592169|ref|YP_007281665.1| - 0.016 13.5 1.7 0.018 13.3 1.2 1.2 1 0 0 1 1 1 0 Platelet-activating factor acetylhydrolase, isoform II DUF2379 PF09543.5 gi|433592169|ref|YP_007281665.1| - 0.022 14.7 3.7 0.066 13.1 2.6 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF2379) Laminin_I PF06008.9 gi|433592169|ref|YP_007281665.1| - 0.032 13.5 14.8 0.24 10.6 1.7 2.0 1 1 1 2 2 2 0 Laminin Domain I vATP-synt_E PF01991.13 gi|433592169|ref|YP_007281665.1| - 0.052 12.8 1.1 0.052 12.8 0.7 2.7 1 1 0 2 2 2 0 ATP synthase (E/31 kDa) subunit IncA PF04156.9 gi|433592169|ref|YP_007281665.1| - 0.065 12.8 18.8 0.32 10.5 5.0 2.0 2 0 0 2 2 2 0 IncA protein Tubulin_2 PF13809.1 gi|433592169|ref|YP_007281665.1| - 0.099 11.5 0.3 0.12 11.2 0.2 1.2 1 0 0 1 1 1 0 Tubulin like CobN-Mg_chel PF02514.11 gi|433592169|ref|YP_007281665.1| - 0.14 9.4 2.0 0.17 9.2 1.4 1.0 1 0 0 1 1 1 0 CobN/Magnesium Chelatase DUF2353 PF09789.4 gi|433592169|ref|YP_007281665.1| - 0.17 11.0 9.9 0.22 10.7 6.9 1.1 1 0 0 1 1 1 0 Uncharacterized coiled-coil protein (DUF2353) WXG100 PF06013.7 gi|433592169|ref|YP_007281665.1| - 0.19 11.7 8.2 2.8 8.0 1.7 2.6 2 1 0 2 2 2 0 Proteins of 100 residues with WXG KfrA_N PF11740.3 gi|433592169|ref|YP_007281665.1| - 0.19 12.1 17.7 0.11 12.8 2.8 2.1 2 0 0 2 2 2 0 Plasmid replication region DNA-binding N-term CorA PF01544.13 gi|433592169|ref|YP_007281665.1| - 0.26 10.3 8.3 0.33 9.9 5.7 1.1 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein eIF3_subunit PF08597.5 gi|433592169|ref|YP_007281665.1| - 0.27 10.7 10.1 0.48 9.9 7.0 1.3 1 1 0 1 1 1 0 Translation initiation factor eIF3 subunit GTP1_OBG PF01018.17 gi|433592169|ref|YP_007281665.1| - 0.28 10.8 0.1 0.28 10.8 0.0 2.0 2 0 0 2 2 2 0 GTP1/OBG WEMBL PF05701.6 gi|433592169|ref|YP_007281665.1| - 0.3 9.5 14.2 0.4 9.0 9.8 1.0 1 0 0 1 1 1 0 Weak chloroplast movement under blue light NPV_P10 PF05531.7 gi|433592169|ref|YP_007281665.1| - 0.31 11.3 7.6 0.45 10.7 0.5 2.2 2 0 0 2 2 2 0 Nucleopolyhedrovirus P10 protein XhlA PF10779.4 gi|433592169|ref|YP_007281665.1| - 0.32 10.9 12.2 0.13 12.1 0.4 2.2 2 0 0 2 2 2 0 Haemolysin XhlA Vac_Fusion PF02346.11 gi|433592169|ref|YP_007281665.1| - 0.32 10.4 2.2 3 7.3 0.2 2.3 2 0 0 2 2 2 0 Chordopoxvirus fusion protein Syntaxin-6_N PF09177.6 gi|433592169|ref|YP_007281665.1| - 0.34 11.3 11.6 0.81 10.1 1.0 2.3 1 1 0 2 2 2 0 Syntaxin 6, N-terminal DUF2408 PF10303.4 gi|433592169|ref|YP_007281665.1| - 0.36 10.9 8.8 14 5.7 6.1 2.3 1 1 0 1 1 1 0 Protein of unknown function (DUF2408) Glyco_hydro_4C PF11975.3 gi|433592169|ref|YP_007281665.1| - 0.39 10.4 2.7 0.59 9.8 1.9 1.2 1 0 0 1 1 1 0 Family 4 glycosyl hydrolase C-terminal domain DUF342 PF03961.8 gi|433592169|ref|YP_007281665.1| - 0.4 9.0 6.5 0.61 8.4 4.5 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF342) CK2S PF15011.1 gi|433592169|ref|YP_007281665.1| - 0.41 10.4 6.1 0.75 9.5 4.3 1.4 1 1 0 1 1 1 0 Casein Kinase 2 substrate CDC37_N PF03234.9 gi|433592169|ref|YP_007281665.1| - 0.45 10.8 9.2 0.55 10.5 6.4 1.1 1 0 0 1 1 1 0 Cdc37 N terminal kinase binding Rab5-bind PF09311.6 gi|433592169|ref|YP_007281665.1| - 0.72 9.7 16.6 1.8 8.4 3.4 2.1 2 0 0 2 2 2 0 Rabaptin-like protein Med10 PF09748.4 gi|433592169|ref|YP_007281665.1| - 0.74 9.6 4.9 11 5.8 3.4 2.0 1 1 0 1 1 1 0 Transcription factor subunit Med10 of Mediator complex DUF1978 PF09321.5 gi|433592169|ref|YP_007281665.1| - 0.79 9.1 13.8 1.3 8.3 9.6 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1978) Fib_alpha PF08702.5 gi|433592169|ref|YP_007281665.1| - 0.83 9.7 8.9 0.37 10.9 0.6 2.1 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family HSP70 PF00012.15 gi|433592169|ref|YP_007281665.1| - 0.86 7.4 9.3 1 7.1 6.4 1.0 1 0 0 1 1 1 0 Hsp70 protein PilJ PF13675.1 gi|433592169|ref|YP_007281665.1| - 0.99 9.7 9.0 0.54 10.5 1.0 2.2 1 1 0 1 1 1 0 Type IV pili methyl-accepting chemotaxis transducer N-term ING PF12998.2 gi|433592169|ref|YP_007281665.1| - 1 9.6 10.2 2.6 8.3 6.9 1.8 1 1 0 1 1 1 0 Inhibitor of growth proteins N-terminal histone-binding Fzo_mitofusin PF04799.8 gi|433592169|ref|YP_007281665.1| - 1 8.6 10.4 2.3 7.5 0.8 2.1 1 1 1 2 2 2 0 fzo-like conserved region FlaC_arch PF05377.6 gi|433592169|ref|YP_007281665.1| - 1 9.2 11.4 0.063 13.1 2.3 2.5 2 1 0 2 2 2 0 Flagella accessory protein C (FlaC) DUF4140 PF13600.1 gi|433592169|ref|YP_007281665.1| - 1.3 9.4 15.3 0.052 13.9 2.0 2.3 1 1 1 2 2 2 0 N-terminal domain of unknown function (DUF4140) Bap31 PF05529.7 gi|433592169|ref|YP_007281665.1| - 1.3 8.4 10.0 2 7.8 6.9 1.3 1 1 0 1 1 1 0 B-cell receptor-associated protein 31-like BLOC1_2 PF10046.4 gi|433592169|ref|YP_007281665.1| - 1.6 8.8 10.2 3.2 7.9 0.6 2.1 2 0 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Cortex-I_coil PF09304.5 gi|433592169|ref|YP_007281665.1| - 2 8.4 16.8 0.36 10.9 2.9 2.1 1 1 1 2 2 2 0 Cortexillin I, coiled coil Sigma70_ner PF04546.8 gi|433592169|ref|YP_007281665.1| - 2.2 7.8 15.0 0.11 12.0 1.3 2.0 1 1 1 2 2 2 0 Sigma-70, non-essential region Apt1 PF10351.4 gi|433592169|ref|YP_007281665.1| - 2.4 6.9 6.3 2.9 6.6 4.3 1.0 1 0 0 1 1 1 0 Golgi-body localisation protein domain DUF964 PF06133.6 gi|433592169|ref|YP_007281665.1| - 2.6 8.0 16.6 1.4 8.9 6.7 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF964) DUF1664 PF07889.7 gi|433592169|ref|YP_007281665.1| - 2.7 7.7 9.4 0.71 9.6 1.1 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) TPR_MLP1_2 PF07926.7 gi|433592169|ref|YP_007281665.1| - 2.9 7.6 18.9 38 4.0 13.2 2.1 1 1 0 1 1 1 0 TPR/MLP1/MLP2-like protein MCC-bdg_PDZ PF10506.4 gi|433592169|ref|YP_007281665.1| - 3 7.7 7.9 3.8 7.4 0.5 2.2 2 0 0 2 2 2 0 PDZ domain of MCC-2 bdg protein for Usher syndrome Med21 PF11221.3 gi|433592169|ref|YP_007281665.1| - 3.2 7.7 14.2 1.7 8.6 1.4 2.1 2 0 0 2 2 2 0 Subunit 21 of Mediator complex DUF4164 PF13747.1 gi|433592169|ref|YP_007281665.1| - 3.3 7.8 14.1 0.25 11.4 1.7 2.5 2 1 0 2 2 2 0 Domain of unknown function (DUF4164) DUF3347 PF11827.3 gi|433592169|ref|YP_007281665.1| - 3.5 7.5 7.3 5.4 6.9 5.1 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3347) DUF607 PF04678.8 gi|433592169|ref|YP_007281665.1| - 3.6 7.4 8.5 27 4.6 5.9 1.9 1 1 0 1 1 1 0 Protein of unknown function, DUF607 Snapin_Pallidin PF14712.1 gi|433592169|ref|YP_007281665.1| - 4 7.8 11.9 6.8 7.0 1.1 2.2 2 0 0 2 2 2 0 Snapin/Pallidin Seryl_tRNA_N PF02403.17 gi|433592169|ref|YP_007281665.1| - 4.1 7.4 16.0 0.68 9.9 1.7 2.2 1 1 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain Mod_r PF07200.8 gi|433592169|ref|YP_007281665.1| - 4.2 7.2 14.8 2.9 7.7 5.5 2.0 1 1 1 2 2 2 0 Modifier of rudimentary (Mod(r)) protein BRE1 PF08647.6 gi|433592169|ref|YP_007281665.1| - 5 7.1 14.3 2.7 8.0 2.6 2.1 1 1 1 2 2 2 0 BRE1 E3 ubiquitin ligase CENP-F_leu_zip PF10473.4 gi|433592169|ref|YP_007281665.1| - 5 6.9 21.4 1.4 8.7 5.7 2.1 1 1 1 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 V_ATPase_I PF01496.14 gi|433592169|ref|YP_007281665.1| - 5.3 4.7 14.5 42 1.7 9.6 1.9 1 1 0 1 1 1 0 V-type ATPase 116kDa subunit family Viral_P18 PF04521.8 gi|433592169|ref|YP_007281665.1| - 5.3 6.5 9.1 0.36 10.2 1.1 2.1 1 1 0 2 2 2 0 ssRNA positive strand viral 18kD cysteine rich protein Cep57_CLD PF14073.1 gi|433592169|ref|YP_007281665.1| - 5.4 6.8 17.8 0.25 11.1 4.7 2.1 1 1 0 2 2 2 0 Centrosome localisation domain of Cep57 DUF3552 PF12072.3 gi|433592169|ref|YP_007281665.1| - 6 6.0 20.3 49 3.0 14.1 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF3552) L_biotic_typeA PF04604.8 gi|433592169|ref|YP_007281665.1| - 7.2 6.3 6.2 1.6 8.4 0.3 2.6 2 1 1 3 3 3 0 Type-A lantibiotic Prominin PF05478.6 gi|433592169|ref|YP_007281665.1| - 7.5 3.9 7.4 17 2.7 5.1 1.5 1 1 0 1 1 1 0 Prominin DUF4559 PF15112.1 gi|433592169|ref|YP_007281665.1| - 7.6 5.5 11.1 10 5.1 7.7 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4559) YtxH PF12732.2 gi|433592169|ref|YP_007281665.1| - 8.9 6.7 11.3 1.6e+03 -0.5 7.9 2.3 1 1 0 1 1 1 0 YtxH-like protein COG2 PF06148.6 gi|433592169|ref|YP_007281665.1| - 9.1 6.1 10.0 6.8 6.5 1.1 2.1 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 Mnd1 PF03962.10 gi|433592169|ref|YP_007281665.1| - 9.7 5.8 14.7 2.6e+02 1.1 10.2 2.0 1 1 0 1 1 1 0 Mnd1 family DUF4618 PF15397.1 gi|433592169|ref|YP_007281665.1| - 9.8 5.4 16.3 18 4.5 11.3 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4618) DUF3194 PF11419.3 gi|433592170|ref|YP_007281666.1| - 0.0034 17.5 1.1 0.0041 17.2 0.7 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3194) RVT_2 PF07727.9 gi|433592170|ref|YP_007281666.1| - 0.072 12.0 0.0 0.082 11.8 0.0 1.1 1 0 0 1 1 1 0 Reverse transcriptase (RNA-dependent DNA polymerase) DUF162 PF02589.10 gi|433592172|ref|YP_007281668.1| - 3.7e-40 137.4 0.8 3.7e-40 137.4 0.5 2.1 2 0 0 2 2 2 1 Uncharacterised ACR, YkgG family COG1556 Fer4_8 PF13183.1 gi|433592172|ref|YP_007281668.1| - 9.4e-10 38.3 4.8 2e-09 37.3 3.3 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|433592172|ref|YP_007281668.1| - 8.2e-08 32.5 5.1 5.4e-05 23.5 0.5 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|433592172|ref|YP_007281668.1| - 1.8e-07 31.3 3.2 3.8e-07 30.3 2.2 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|433592172|ref|YP_007281668.1| - 5.3e-07 29.9 6.9 1.2e-06 28.8 4.8 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|433592172|ref|YP_007281668.1| - 9.1e-06 25.3 9.1 0.00013 21.6 7.0 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|433592172|ref|YP_007281668.1| - 2.8e-05 23.5 14.9 0.00042 19.7 2.3 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|433592172|ref|YP_007281668.1| - 5.7e-05 23.3 10.3 0.00068 19.8 7.5 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|433592172|ref|YP_007281668.1| - 0.00012 21.8 9.0 0.00085 19.1 6.3 2.2 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|433592172|ref|YP_007281668.1| - 0.00019 21.1 12.4 0.011 15.6 2.2 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|433592172|ref|YP_007281668.1| - 0.00038 20.2 13.3 0.0022 17.8 2.2 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|433592172|ref|YP_007281668.1| - 0.0036 17.5 14.4 0.044 14.1 2.6 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_20 PF14691.1 gi|433592172|ref|YP_007281668.1| - 0.019 14.5 0.1 0.019 14.5 0.1 2.1 2 0 0 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_16 PF13484.1 gi|433592172|ref|YP_007281668.1| - 0.07 13.8 9.9 0.34 11.6 6.8 2.2 1 1 0 1 1 1 0 4Fe-4S double cluster binding domain Fer4_3 PF12798.2 gi|433592172|ref|YP_007281668.1| - 0.071 13.7 18.1 0.16 12.6 4.0 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_15 PF13459.1 gi|433592172|ref|YP_007281668.1| - 6.8 7.3 13.3 0.25 11.9 0.2 3.7 4 0 0 4 4 2 0 4Fe-4S single cluster domain DUF162 PF02589.10 gi|433592173|ref|YP_007281669.1| - 2.4e-22 79.3 0.6 1.1e-21 77.2 0.4 1.8 1 1 0 1 1 1 1 Uncharacterised ACR, YkgG family COG1556 GATase PF00117.23 gi|433592174|ref|YP_007281670.1| - 2.9e-36 124.7 0.0 3.3e-36 124.5 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|433592174|ref|YP_007281670.1| - 3.9e-14 52.6 0.5 6.3e-13 48.6 0.0 2.5 1 1 1 2 2 2 1 Peptidase C26 GATase_3 PF07685.9 gi|433592174|ref|YP_007281670.1| - 0.11 12.0 0.4 0.21 11.1 0.3 1.7 1 1 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain Zn_Tnp_IS1595 PF12760.2 gi|433592175|ref|YP_007281671.1| - 0.017 14.9 1.5 0.036 13.8 1.1 1.6 1 0 0 1 1 1 0 Transposase zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|433592175|ref|YP_007281671.1| - 0.046 12.9 0.0 0.073 12.2 0.0 1.4 1 0 0 1 1 1 0 zinc-ribbon domain Mu-like_Com PF10122.4 gi|433592175|ref|YP_007281671.1| - 0.12 11.4 0.2 0.19 10.7 0.1 1.4 1 0 0 1 1 1 0 Mu-like prophage protein Com DNA_ligase_ZBD PF03119.11 gi|433592175|ref|YP_007281671.1| - 0.29 10.8 1.5 0.49 10.1 1.1 1.5 1 1 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain DUF1212 PF06738.7 gi|433592177|ref|YP_007281673.1| - 0.026 14.0 5.8 0.031 13.7 4.0 1.2 1 1 0 1 1 1 0 Protein of unknown function (DUF1212) Cyt_c_ox_IV PF12270.3 gi|433592177|ref|YP_007281673.1| - 1.1 8.9 7.0 0.1 12.3 1.3 1.8 3 0 0 3 3 3 0 Cytochrome c oxidase subunit IV PetG PF02529.10 gi|433592177|ref|YP_007281673.1| - 3.5 7.2 13.0 0.33 10.5 2.3 2.6 2 0 0 2 2 2 0 Cytochrome B6-F complex subunit 5 IncA PF04156.9 gi|433592177|ref|YP_007281673.1| - 6.5 6.3 12.7 0.83 9.2 0.0 2.1 2 0 0 2 2 2 0 IncA protein DUF4293 PF14126.1 gi|433592178|ref|YP_007281674.1| - 0.014 15.2 0.3 0.018 14.9 0.2 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4293) MARVEL PF01284.18 gi|433592178|ref|YP_007281674.1| - 0.02 14.7 0.6 0.024 14.4 0.4 1.1 1 0 0 1 1 1 0 Membrane-associating domain Peptidase_M50B PF13398.1 gi|433592178|ref|YP_007281674.1| - 0.04 13.2 0.4 0.044 13.1 0.3 1.0 1 0 0 1 1 1 0 Peptidase M50B-like PDGLE PF13190.1 gi|433592178|ref|YP_007281674.1| - 0.062 12.9 0.1 0.086 12.5 0.1 1.3 1 1 0 1 1 1 0 PDGLE domain CoxIIa PF08113.6 gi|433592178|ref|YP_007281674.1| - 0.79 9.4 4.2 0.27 10.9 0.8 1.8 2 0 0 2 2 2 0 Cytochrome c oxidase subunit IIa family Transport_MerF PF11431.3 gi|433592178|ref|YP_007281674.1| - 2.1 8.0 4.7 6.2 6.5 0.0 2.1 2 0 0 2 2 2 0 Membrane transport protein MerF CTV_P6 PF06706.6 gi|433592179|ref|YP_007281675.1| - 0.071 12.6 2.7 0.09 12.2 1.9 1.1 1 0 0 1 1 1 0 Citrus tristeza virus 6-kDa protein PepSY_TM_1 PF13172.1 gi|433592179|ref|YP_007281675.1| - 3.8 7.3 5.3 5 7.0 3.7 1.3 1 0 0 1 1 1 0 PepSY-associated TM helix NAD_binding_10 PF13460.1 gi|433592180|ref|YP_007281676.1| - 5e-31 108.1 0.6 6.7e-31 107.7 0.4 1.1 1 0 0 1 1 1 1 NADH(P)-binding NmrA PF05368.8 gi|433592180|ref|YP_007281676.1| - 1.7e-08 34.0 0.0 3.6e-08 32.9 0.0 1.6 1 1 0 1 1 1 1 NmrA-like family 3Beta_HSD PF01073.14 gi|433592180|ref|YP_007281676.1| - 0.00065 18.4 0.2 0.00088 18.0 0.1 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Semialdhyde_dh PF01118.19 gi|433592180|ref|YP_007281676.1| - 0.0073 16.6 0.1 0.013 15.8 0.1 1.5 1 1 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Epimerase PF01370.16 gi|433592180|ref|YP_007281676.1| - 0.026 13.9 0.0 0.037 13.4 0.0 1.3 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family PASTA PF03793.14 gi|433592180|ref|YP_007281676.1| - 0.043 13.4 0.0 0.089 12.4 0.0 1.6 1 0 0 1 1 1 0 PASTA domain RmlD_sub_bind PF04321.12 gi|433592180|ref|YP_007281676.1| - 0.13 11.0 0.0 0.23 10.3 0.0 1.3 1 0 0 1 1 1 0 RmlD substrate binding domain Lactamase_B PF00753.22 gi|433592181|ref|YP_007281677.1| - 3.1e-28 98.7 7.3 6.8e-28 97.6 5.0 1.5 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|433592181|ref|YP_007281677.1| - 5.5e-05 22.8 3.9 0.00042 19.9 3.0 2.1 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|433592181|ref|YP_007281677.1| - 0.022 14.4 0.1 0.076 12.7 0.0 2.0 2 1 0 2 2 2 0 Beta-lactamase superfamily domain DUF3203 PF11462.3 gi|433592181|ref|YP_007281677.1| - 0.42 10.5 2.1 9.7 6.1 1.4 2.9 2 1 0 2 2 2 0 Protein of unknown function (DUF3203) Peripla_BP_6 PF13458.1 gi|433592182|ref|YP_007281678.1| - 2.9e-42 145.2 1.5 3.8e-42 144.8 1.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.23 gi|433592182|ref|YP_007281678.1| - 6.3e-18 64.6 0.0 1.1e-12 47.4 0.0 2.1 2 0 0 2 2 2 2 Receptor family ligand binding region Peripla_BP_5 PF13433.1 gi|433592182|ref|YP_007281678.1| - 3.7e-17 62.1 0.0 7.6e-11 41.3 0.0 2.2 2 0 0 2 2 2 2 Periplasmic binding protein domain Bmp PF02608.9 gi|433592182|ref|YP_007281678.1| - 0.002 16.9 0.1 0.77 8.4 0.0 2.2 2 0 0 2 2 2 2 Basic membrane protein TAT_signal PF10518.4 gi|433592182|ref|YP_007281678.1| - 0.036 14.0 8.3 0.068 13.2 5.7 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence CytB6-F_Fe-S PF08802.5 gi|433592182|ref|YP_007281678.1| - 0.27 11.2 0.9 0.5 10.4 0.7 1.4 1 0 0 1 1 1 0 Cytochrome B6-F complex Fe-S subunit BPD_transp_2 PF02653.11 gi|433592183|ref|YP_007281679.1| - 3.3e-36 124.6 41.1 4.2e-36 124.2 28.5 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component Pam17 PF08566.5 gi|433592183|ref|YP_007281679.1| - 5 6.7 5.1 13 5.4 0.3 2.5 2 0 0 2 2 2 0 Mitochondrial import protein Pam17 BPD_transp_2 PF02653.11 gi|433592184|ref|YP_007281680.1| - 1.3e-35 122.7 30.4 1.8e-35 122.2 21.1 1.2 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component BC10 PF06726.7 gi|433592184|ref|YP_007281680.1| - 0.58 10.2 3.9 0.97 9.4 0.0 3.0 4 0 0 4 4 4 0 Bladder cancer-related protein BC10 ABC_tran PF00005.22 gi|433592185|ref|YP_007281681.1| - 2.3e-27 95.9 0.0 3.4e-27 95.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter BCA_ABC_TP_C PF12399.3 gi|433592185|ref|YP_007281681.1| - 6.6e-09 35.2 0.6 1.3e-08 34.2 0.4 1.4 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_21 PF13304.1 gi|433592185|ref|YP_007281681.1| - 3.3e-07 30.5 0.2 6.5e-06 26.3 0.1 2.1 2 0 0 2 2 2 1 AAA domain AAA_23 PF13476.1 gi|433592185|ref|YP_007281681.1| - 3.5e-05 24.2 1.7 3.7e-05 24.1 0.5 1.6 1 1 1 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|433592185|ref|YP_007281681.1| - 8.4e-05 22.0 0.0 0.00016 21.1 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|433592185|ref|YP_007281681.1| - 0.00052 19.3 0.5 0.0031 16.7 0.1 2.0 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_25 PF13481.1 gi|433592185|ref|YP_007281681.1| - 0.015 14.7 0.1 5 6.4 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_10 PF12846.2 gi|433592185|ref|YP_007281681.1| - 0.034 13.6 0.3 0.53 9.6 0.1 2.1 2 0 0 2 2 2 0 AAA-like domain DUF258 PF03193.11 gi|433592185|ref|YP_007281681.1| - 0.039 13.1 0.1 0.079 12.1 0.0 1.5 2 0 0 2 2 2 0 Protein of unknown function, DUF258 MMR_HSR1 PF01926.18 gi|433592185|ref|YP_007281681.1| - 0.042 13.8 0.2 0.055 13.4 0.1 1.6 1 1 0 1 1 1 0 50S ribosome-binding GTPase ABC_ATPase PF09818.4 gi|433592185|ref|YP_007281681.1| - 0.053 12.0 0.8 0.15 10.6 0.0 1.9 2 0 0 2 2 2 0 Predicted ATPase of the ABC class AAA_16 PF13191.1 gi|433592185|ref|YP_007281681.1| - 0.054 13.4 0.1 0.13 12.2 0.0 1.7 2 0 0 2 2 2 0 AAA ATPase domain AAA PF00004.24 gi|433592185|ref|YP_007281681.1| - 0.066 13.4 0.1 0.18 12.0 0.0 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) SbcCD_C PF13558.1 gi|433592185|ref|YP_007281681.1| - 0.085 12.7 0.0 0.15 12.0 0.0 1.4 1 0 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_15 PF13175.1 gi|433592185|ref|YP_007281681.1| - 0.11 11.5 0.0 0.24 10.4 0.0 1.6 1 1 0 2 2 2 0 AAA ATPase domain ArgK PF03308.11 gi|433592185|ref|YP_007281681.1| - 0.13 10.9 1.3 0.29 9.8 0.0 2.0 2 1 1 3 3 3 0 ArgK protein MobB PF03205.9 gi|433592185|ref|YP_007281681.1| - 0.14 11.8 0.2 1.2 8.8 0.0 2.4 3 0 0 3 3 3 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_33 PF13671.1 gi|433592185|ref|YP_007281681.1| - 0.15 11.9 0.0 0.37 10.6 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_17 PF13207.1 gi|433592185|ref|YP_007281681.1| - 0.17 12.7 1.0 0.35 11.7 0.1 1.9 2 1 0 2 2 2 0 AAA domain ABC_tran PF00005.22 gi|433592186|ref|YP_007281682.1| - 2.1e-28 99.3 0.0 2.9e-28 98.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|433592186|ref|YP_007281682.1| - 3.3e-10 40.3 0.1 0.00072 19.6 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_23 PF13476.1 gi|433592186|ref|YP_007281682.1| - 0.00028 21.2 0.1 0.00066 20.0 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|433592186|ref|YP_007281682.1| - 0.00076 18.9 0.1 0.0016 17.9 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|433592186|ref|YP_007281682.1| - 0.00081 18.6 1.0 0.0066 15.7 0.7 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_17 PF13207.1 gi|433592186|ref|YP_007281682.1| - 0.0012 19.6 0.2 0.0034 18.1 0.0 1.8 2 1 0 2 2 2 1 AAA domain AAA_30 PF13604.1 gi|433592186|ref|YP_007281682.1| - 0.0052 16.3 0.1 0.013 15.1 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|433592186|ref|YP_007281682.1| - 0.0073 16.0 0.0 0.084 12.6 0.0 2.1 2 0 0 2 2 2 1 Part of AAA domain AAA_25 PF13481.1 gi|433592186|ref|YP_007281682.1| - 0.01 15.2 0.0 0.015 14.6 0.0 1.4 1 1 0 1 1 1 0 AAA domain ABC_ATPase PF09818.4 gi|433592186|ref|YP_007281682.1| - 0.017 13.7 0.4 0.19 10.2 0.1 2.0 2 0 0 2 2 2 0 Predicted ATPase of the ABC class AAA_16 PF13191.1 gi|433592186|ref|YP_007281682.1| - 0.019 14.9 0.1 0.041 13.8 0.1 1.7 1 1 0 1 1 1 0 AAA ATPase domain T2SE PF00437.15 gi|433592186|ref|YP_007281682.1| - 0.031 13.1 0.2 0.14 11.0 0.0 2.0 2 0 0 2 2 2 0 Type II/IV secretion system protein AAA_22 PF13401.1 gi|433592186|ref|YP_007281682.1| - 0.035 14.2 0.1 0.083 13.0 0.0 1.8 1 1 0 1 1 1 0 AAA domain AAA PF00004.24 gi|433592186|ref|YP_007281682.1| - 0.052 13.7 0.0 0.099 12.8 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) DUF258 PF03193.11 gi|433592186|ref|YP_007281682.1| - 0.063 12.4 0.0 0.094 11.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF258 SbcCD_C PF13558.1 gi|433592186|ref|YP_007281682.1| - 0.079 12.8 0.5 0.87 9.5 0.4 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit ATP_bind_1 PF03029.12 gi|433592186|ref|YP_007281682.1| - 0.093 12.2 0.0 0.15 11.5 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein Arch_ATPase PF01637.13 gi|433592186|ref|YP_007281682.1| - 0.14 11.7 0.0 0.21 11.2 0.0 1.3 1 0 0 1 1 1 0 Archaeal ATPase 4HBT_2 PF13279.1 gi|433592187|ref|YP_007281683.1| - 6.9e-11 42.6 0.5 8.2e-11 42.4 0.3 1.0 1 0 0 1 1 1 1 Thioesterase-like superfamily 4HBT PF03061.17 gi|433592187|ref|YP_007281683.1| - 9.5e-10 38.4 0.1 1.5e-09 37.8 0.1 1.3 1 0 0 1 1 1 1 Thioesterase superfamily Acyl-ACP_TE PF01643.12 gi|433592187|ref|YP_007281683.1| - 0.016 14.1 0.0 0.02 13.8 0.0 1.1 1 0 0 1 1 1 0 Acyl-ACP thioesterase ExoD PF06055.7 gi|433592188|ref|YP_007281684.1| - 0.095 11.8 6.3 0.099 11.7 4.4 1.0 1 0 0 1 1 1 0 Exopolysaccharide synthesis, ExoD IncA PF04156.9 gi|433592188|ref|YP_007281684.1| - 0.97 8.9 10.5 1.1 8.8 7.2 1.0 1 0 0 1 1 1 0 IncA protein DUF4400 PF14348.1 gi|433592188|ref|YP_007281684.1| - 2.9 7.2 5.1 2.7 7.3 3.5 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4400) PGPGW PF09656.5 gi|433592188|ref|YP_007281684.1| - 5.4 6.3 16.0 23 4.3 11.0 1.8 1 1 0 1 1 1 0 Putative transmembrane protein (PGPGW) SdpI PF13630.1 gi|433592188|ref|YP_007281684.1| - 6.1 6.6 5.9 9.6 6.0 4.1 1.4 1 1 0 1 1 1 0 SdpI/YhfL protein family Amino_oxidase PF01593.19 gi|433592189|ref|YP_007281685.1| - 2.4e-44 152.1 2.5 1.5e-43 149.5 1.7 1.8 1 1 0 1 1 1 1 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.1 gi|433592189|ref|YP_007281685.1| - 4.8e-15 55.3 2.0 6.1e-15 55.0 0.3 1.9 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain DAO PF01266.19 gi|433592189|ref|YP_007281685.1| - 4.3e-14 52.1 5.8 2.1e-06 26.8 0.0 2.9 3 0 0 3 3 3 2 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|433592189|ref|YP_007281685.1| - 1.9e-07 29.9 0.2 0.0002 19.9 0.1 2.1 2 0 0 2 2 2 2 HI0933-like protein Pyr_redox_2 PF07992.9 gi|433592189|ref|YP_007281685.1| - 2.6e-07 30.7 0.4 0.00014 21.8 0.2 2.4 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|433592189|ref|YP_007281685.1| - 2.9e-06 27.5 0.7 0.00085 19.6 0.3 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|433592189|ref|YP_007281685.1| - 4.7e-06 25.8 1.1 2.7e-05 23.4 0.5 2.0 2 0 0 2 2 2 1 FAD binding domain Pyr_redox_3 PF13738.1 gi|433592189|ref|YP_007281685.1| - 2.3e-05 24.5 0.0 0.0032 17.5 0.0 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|433592189|ref|YP_007281685.1| - 0.0001 21.3 2.8 0.0001 21.3 2.0 2.1 1 1 1 2 2 2 1 FAD binding domain NAD_binding_10 PF13460.1 gi|433592189|ref|YP_007281685.1| - 0.00012 22.1 2.4 0.00061 19.8 0.3 2.3 2 0 0 2 2 2 1 NADH(P)-binding Thi4 PF01946.12 gi|433592189|ref|YP_007281685.1| - 0.00035 19.7 0.1 0.00064 18.8 0.0 1.3 1 0 0 1 1 1 1 Thi4 family NAD_binding_9 PF13454.1 gi|433592189|ref|YP_007281685.1| - 0.00051 19.8 1.9 0.3 10.8 0.1 2.6 2 0 0 2 2 2 2 FAD-NAD(P)-binding FAD_oxidored PF12831.2 gi|433592189|ref|YP_007281685.1| - 0.00078 18.6 5.6 0.0015 17.7 3.0 1.8 2 0 0 2 2 2 1 FAD dependent oxidoreductase GIDA PF01134.17 gi|433592189|ref|YP_007281685.1| - 0.00079 18.3 0.8 0.0013 17.7 0.5 1.3 1 0 0 1 1 1 1 Glucose inhibited division protein A Trp_halogenase PF04820.9 gi|433592189|ref|YP_007281685.1| - 0.018 13.6 0.7 0.027 13.1 0.5 1.2 1 0 0 1 1 1 0 Tryptophan halogenase Lycopene_cycl PF05834.7 gi|433592189|ref|YP_007281685.1| - 0.067 12.0 1.2 0.51 9.1 0.1 2.1 2 0 0 2 2 2 0 Lycopene cyclase protein AlaDh_PNT_C PF01262.16 gi|433592189|ref|YP_007281685.1| - 0.071 12.6 0.1 0.12 11.9 0.1 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain 3HCDH_N PF02737.13 gi|433592189|ref|YP_007281685.1| - 0.076 12.6 0.3 0.15 11.6 0.2 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_7 PF13241.1 gi|433592189|ref|YP_007281685.1| - 0.13 12.4 0.1 0.41 10.9 0.0 1.8 2 0 0 2 2 1 0 Putative NAD(P)-binding ApbA PF02558.11 gi|433592189|ref|YP_007281685.1| - 0.15 11.5 0.5 0.36 10.2 0.1 1.7 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA Herpes_UL49_5 PF05702.6 gi|433592190|ref|YP_007281686.1| - 0.22 11.4 3.9 0.26 11.2 2.4 1.4 1 1 0 1 1 1 0 Herpesvirus UL49.5 envelope/tegument protein Metallophos PF00149.23 gi|433592191|ref|YP_007281687.1| - 7.2e-07 28.7 0.0 1.4e-06 27.8 0.0 1.4 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Exosortase_EpsH PF09721.5 gi|433592192|ref|YP_007281688.1| - 3e-47 161.0 20.1 4.1e-47 160.6 13.9 1.1 1 0 0 1 1 1 1 Transmembrane exosortase (Exosortase_EpsH) MarR_2 PF12802.2 gi|433592193|ref|YP_007281689.1| - 3.7e-08 32.9 0.1 1.2e-07 31.2 0.1 1.9 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|433592193|ref|YP_007281689.1| - 2.1e-07 30.2 0.0 3.4e-07 29.5 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.1 gi|433592193|ref|YP_007281689.1| - 1e-06 28.9 0.1 6.5e-06 26.3 0.0 2.3 2 0 0 2 2 2 1 Winged helix DNA-binding domain MarR PF01047.17 gi|433592193|ref|YP_007281689.1| - 1.6e-06 27.6 0.0 3.7e-06 26.5 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.1 gi|433592193|ref|YP_007281689.1| - 0.00043 20.0 0.0 0.001 18.7 0.0 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_45 PF14947.1 gi|433592193|ref|YP_007281689.1| - 0.00046 19.9 0.0 0.00083 19.1 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_11 PF08279.7 gi|433592193|ref|YP_007281689.1| - 0.00084 18.9 0.0 0.0014 18.2 0.0 1.3 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.2 gi|433592193|ref|YP_007281689.1| - 0.0011 18.6 0.0 0.0027 17.4 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_13 PF11972.3 gi|433592193|ref|YP_007281689.1| - 0.0026 17.5 0.2 0.0081 15.9 0.0 1.9 2 0 0 2 2 2 1 HTH DNA binding domain HTH_IclR PF09339.5 gi|433592193|ref|YP_007281689.1| - 0.011 15.3 0.0 0.024 14.2 0.0 1.6 1 0 0 1 1 1 0 IclR helix-turn-helix domain Rrf2 PF02082.15 gi|433592193|ref|YP_007281689.1| - 0.023 14.8 0.0 0.1 12.7 0.0 2.0 2 0 0 2 2 2 0 Transcriptional regulator DUF387 PF04079.11 gi|433592193|ref|YP_007281689.1| - 0.036 13.4 0.0 0.061 12.6 0.0 1.4 1 0 0 1 1 1 0 Putative transcriptional regulators (Ypuh-like) Mnd1 PF03962.10 gi|433592193|ref|YP_007281689.1| - 0.04 13.5 0.0 0.063 12.9 0.0 1.2 1 0 0 1 1 1 0 Mnd1 family HTH_5 PF01022.15 gi|433592193|ref|YP_007281689.1| - 0.044 13.4 0.0 0.071 12.7 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family MotA_activ PF09114.5 gi|433592193|ref|YP_007281689.1| - 0.053 13.2 0.0 0.095 12.4 0.0 1.5 1 0 0 1 1 1 0 Transcription factor MotA, activation domain HTH_12 PF08461.5 gi|433592193|ref|YP_007281689.1| - 0.072 12.8 0.0 0.16 11.7 0.0 1.6 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain DUF4364 PF14277.1 gi|433592193|ref|YP_007281689.1| - 0.089 12.4 0.0 0.13 11.8 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) GntR PF00392.16 gi|433592193|ref|YP_007281689.1| - 0.092 12.2 0.2 0.19 11.2 0.1 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family TrmB PF01978.14 gi|433592193|ref|YP_007281689.1| - 0.12 12.0 0.1 0.24 11.1 0.1 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB PAC2 PF09754.4 gi|433592194|ref|YP_007281690.1| - 3.8e-50 170.7 0.4 4.6e-50 170.4 0.3 1.0 1 0 0 1 1 1 1 PAC2 family Nop10p PF04135.7 gi|433592195|ref|YP_007281691.1| - 3.2e-20 71.5 0.2 3.5e-20 71.4 0.2 1.0 1 0 0 1 1 1 1 Nucleolar RNA-binding protein, Nop10p family zf-ribbon_3 PF13248.1 gi|433592195|ref|YP_007281691.1| - 0.022 13.9 0.3 0.055 12.6 0.2 1.6 2 0 0 2 2 2 0 zinc-ribbon domain EIF_2_alpha PF07541.7 gi|433592196|ref|YP_007281692.1| - 3.8e-28 97.5 0.0 5.9e-28 96.8 0.0 1.3 1 0 0 1 1 1 1 Eukaryotic translation initiation factor 2 alpha subunit S1 PF00575.18 gi|433592196|ref|YP_007281692.1| - 3.5e-13 49.4 2.5 5.4e-13 48.8 0.7 2.0 2 0 0 2 2 2 1 S1 RNA binding domain DUF2073 PF09846.4 gi|433592196|ref|YP_007281692.1| - 0.11 12.1 0.0 0.21 11.2 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2073) cwf21 PF08312.7 gi|433592196|ref|YP_007281692.1| - 0.13 12.0 0.1 0.13 12.0 0.1 2.3 2 1 0 2 2 2 0 cwf21 domain Ribosomal_S27e PF01667.12 gi|433592197|ref|YP_007281693.1| - 1.5e-20 72.4 0.3 1.6e-20 72.3 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein S27 Zn-ribbon_8 PF09723.5 gi|433592197|ref|YP_007281693.1| - 0.00011 22.0 1.1 0.00015 21.6 0.8 1.1 1 0 0 1 1 1 1 Zinc ribbon domain zf-LSD1 PF06943.7 gi|433592197|ref|YP_007281693.1| - 0.036 13.6 3.4 1.9 8.1 0.2 2.3 2 0 0 2 2 2 0 LSD1 zinc finger OrfB_Zn_ribbon PF07282.6 gi|433592197|ref|YP_007281693.1| - 0.037 13.6 0.5 0.045 13.4 0.3 1.2 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zf-CHY PF05495.7 gi|433592197|ref|YP_007281693.1| - 0.054 13.6 0.6 0.088 12.9 0.4 1.4 1 0 0 1 1 1 0 CHY zinc finger HypA PF01155.14 gi|433592197|ref|YP_007281693.1| - 0.069 12.8 0.6 0.082 12.6 0.4 1.2 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family C1_1 PF00130.17 gi|433592197|ref|YP_007281693.1| - 0.08 12.6 0.4 0.12 12.0 0.3 1.3 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Zn_Tnp_IS91 PF14319.1 gi|433592197|ref|YP_007281693.1| - 0.11 12.0 0.2 0.12 11.9 0.1 1.1 1 0 0 1 1 1 0 Transposase zinc-binding domain zinc_ribbon_5 PF13719.1 gi|433592197|ref|YP_007281693.1| - 0.17 11.4 3.3 3.4 7.3 0.2 2.2 1 1 1 2 2 2 0 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|433592197|ref|YP_007281693.1| - 0.18 11.0 2.2 0.4 9.9 1.5 1.6 1 1 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|433592197|ref|YP_007281693.1| - 0.18 11.5 3.2 4.9 6.9 0.2 2.2 1 1 1 2 2 2 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|433592197|ref|YP_007281693.1| - 0.22 10.8 3.7 0.084 12.2 1.0 1.5 2 0 0 2 2 2 0 TFIIB zinc-binding Prok-RING_1 PF14446.1 gi|433592197|ref|YP_007281693.1| - 0.29 10.9 2.5 0.72 9.6 1.7 1.6 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 zinc_ribbon_6 PF14599.1 gi|433592197|ref|YP_007281693.1| - 0.42 10.4 2.0 0.91 9.3 1.4 1.7 1 1 0 1 1 1 0 Zinc-ribbon Ribosomal_L44 PF00935.14 gi|433592198|ref|YP_007281694.1| - 4.8e-27 93.7 2.1 5.9e-27 93.4 1.4 1.1 1 0 0 1 1 1 1 Ribosomal protein L44 Terminase_GpA PF05876.7 gi|433592198|ref|YP_007281694.1| - 0.0018 16.7 0.5 0.0022 16.4 0.4 1.1 1 0 0 1 1 1 1 Phage terminase large subunit (GpA) zf-ribbon_3 PF13248.1 gi|433592198|ref|YP_007281694.1| - 0.0029 16.7 0.6 1.8 7.8 0.0 2.3 2 0 0 2 2 2 2 zinc-ribbon domain DUF2296 PF10058.4 gi|433592198|ref|YP_007281694.1| - 0.0066 16.1 2.0 1 9.1 0.0 2.2 2 0 0 2 2 2 2 Predicted integral membrane metal-binding protein (DUF2296) zinc_ribbon_2 PF13240.1 gi|433592198|ref|YP_007281694.1| - 0.011 15.1 5.5 1.2 8.6 1.6 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-Mss51 PF13824.1 gi|433592198|ref|YP_007281694.1| - 0.018 14.9 0.6 0.028 14.2 0.4 1.4 1 1 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 Zn_Tnp_IS1595 PF12760.2 gi|433592198|ref|YP_007281694.1| - 0.02 14.6 2.6 2.2 8.1 0.1 2.3 2 0 0 2 2 2 0 Transposase zinc-ribbon domain DZR PF12773.2 gi|433592198|ref|YP_007281694.1| - 0.022 14.5 3.3 0.092 12.5 2.3 1.8 1 1 0 1 1 1 0 Double zinc ribbon Tnp_zf-ribbon_2 PF13842.1 gi|433592198|ref|YP_007281694.1| - 0.031 14.7 2.2 0.65 10.4 0.1 2.3 2 0 0 2 2 2 0 DDE_Tnp_1-like zinc-ribbon Lar_restr_allev PF14354.1 gi|433592198|ref|YP_007281694.1| - 0.038 14.3 0.1 0.09 13.0 0.1 1.6 1 1 0 1 1 1 0 Restriction alleviation protein Lar Zn-ribbon_8 PF09723.5 gi|433592198|ref|YP_007281694.1| - 0.056 13.4 2.6 2.4 8.1 0.2 2.3 2 0 0 2 2 2 0 Zinc ribbon domain zf-UBR PF02207.15 gi|433592198|ref|YP_007281694.1| - 0.091 12.4 2.7 4.1 7.1 0.4 2.1 2 0 0 2 2 2 0 Putative zinc finger in N-recognin (UBR box) Cys_rich_CPXG PF14255.1 gi|433592198|ref|YP_007281694.1| - 0.21 11.4 0.3 0.21 11.4 0.2 1.6 2 0 0 2 2 2 0 Cysteine-rich CPXCG CpXC PF14353.1 gi|433592198|ref|YP_007281694.1| - 0.3 11.0 1.5 5.4 7.0 0.2 2.1 2 0 0 2 2 2 0 CpXC protein zf-ISL3 PF14690.1 gi|433592198|ref|YP_007281694.1| - 0.4 10.7 6.3 6.8 6.8 0.1 2.4 2 1 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zinc_ribbon_5 PF13719.1 gi|433592198|ref|YP_007281694.1| - 0.58 9.7 2.6 12 5.5 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain WCCH PF03716.9 gi|433592198|ref|YP_007281694.1| - 0.69 9.4 4.7 1.2 8.6 3.3 1.4 1 0 0 1 1 1 0 WCCH motif Nudix_N_2 PF14803.1 gi|433592198|ref|YP_007281694.1| - 0.74 9.5 4.1 14 5.4 0.1 2.6 2 1 0 2 2 2 0 Nudix N-terminal zf-HIT PF04438.11 gi|433592198|ref|YP_007281694.1| - 1.9 8.2 6.0 2 8.1 0.5 2.2 2 0 0 2 2 2 0 HIT zinc finger Ribosomal_L33 PF00471.15 gi|433592198|ref|YP_007281694.1| - 5.7 7.2 7.6 0.99 9.7 1.8 2.1 2 0 0 2 2 2 0 Ribosomal protein L33 GtrA PF04138.9 gi|433592200|ref|YP_007281696.1| - 1.8e-22 79.4 10.0 2.1e-22 79.2 6.9 1.0 1 0 0 1 1 1 1 GtrA-like protein ADC PF06314.6 gi|433592201|ref|YP_007281697.1| - 5.7e-21 74.9 0.1 6.5e-21 74.7 0.0 1.0 1 0 0 1 1 1 1 Acetoacetate decarboxylase (ADC) DUF2071 PF09844.4 gi|433592201|ref|YP_007281697.1| - 0.14 11.5 0.0 0.33 10.3 0.0 1.6 1 0 0 1 1 1 0 Uncharacterized conserved protein (COG2071) Abhydrolase_6 PF12697.2 gi|433592202|ref|YP_007281698.1| - 5.4e-30 104.9 2.1 5.4e-30 104.9 1.4 1.6 2 0 0 2 2 2 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|433592202|ref|YP_007281698.1| - 4.9e-15 55.5 0.0 1.5e-14 53.9 0.0 1.8 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|433592202|ref|YP_007281698.1| - 9.3e-12 44.9 0.0 9.9e-09 35.0 0.0 2.2 1 1 1 2 2 2 2 alpha/beta hydrolase fold Esterase PF00756.15 gi|433592202|ref|YP_007281698.1| - 4.4e-05 23.0 0.0 0.00015 21.2 0.0 2.0 2 1 0 2 2 2 1 Putative esterase Ndr PF03096.9 gi|433592202|ref|YP_007281698.1| - 0.0026 16.2 0.0 0.016 13.6 0.0 2.0 2 0 0 2 2 2 1 Ndr family ABC_tran PF00005.22 gi|433592205|ref|YP_007281701.1| - 3.6e-33 114.7 0.0 5.8e-33 114.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|433592205|ref|YP_007281701.1| - 7.8e-16 58.1 1.1 1.5e-15 57.2 0.8 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|433592205|ref|YP_007281701.1| - 9.8e-08 32.2 0.1 0.0001 22.4 0.0 2.2 1 1 0 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|433592205|ref|YP_007281701.1| - 0.00017 21.7 0.4 0.00097 19.2 0.1 2.3 2 1 0 2 2 2 1 AAA domain SMC_N PF02463.14 gi|433592205|ref|YP_007281701.1| - 0.00023 20.4 0.0 0.00056 19.2 0.0 1.6 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain FtsK_SpoIIIE PF01580.13 gi|433592205|ref|YP_007281701.1| - 0.00035 20.1 0.1 0.021 14.3 0.0 2.2 2 0 0 2 2 2 1 FtsK/SpoIIIE family AAA_16 PF13191.1 gi|433592205|ref|YP_007281701.1| - 0.00085 19.3 0.8 0.0095 15.9 0.1 2.4 2 1 0 2 2 2 1 AAA ATPase domain AAA PF00004.24 gi|433592205|ref|YP_007281701.1| - 0.014 15.6 0.0 0.15 12.2 0.0 2.6 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_13 PF13166.1 gi|433592205|ref|YP_007281701.1| - 0.016 13.7 0.1 2.4 6.4 0.1 2.5 2 0 0 2 2 2 0 AAA domain DUF258 PF03193.11 gi|433592205|ref|YP_007281701.1| - 0.022 13.9 0.0 0.038 13.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_5 PF07728.9 gi|433592205|ref|YP_007281701.1| - 0.026 14.2 0.9 0.71 9.6 0.1 3.0 3 1 0 3 3 3 0 AAA domain (dynein-related subfamily) ATP-synt_ab PF00006.20 gi|433592205|ref|YP_007281701.1| - 0.044 13.2 0.0 0.093 12.2 0.1 1.3 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_18 PF13238.1 gi|433592205|ref|YP_007281701.1| - 0.053 13.8 0.0 0.19 12.0 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.1 gi|433592205|ref|YP_007281701.1| - 0.061 12.8 0.2 0.12 11.8 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_33 PF13671.1 gi|433592205|ref|YP_007281701.1| - 0.067 13.0 0.2 0.77 9.6 0.1 2.5 2 1 0 2 2 2 0 AAA domain SbcCD_C PF13558.1 gi|433592205|ref|YP_007281701.1| - 0.073 13.0 0.4 0.52 10.2 0.0 2.4 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit DUF2170 PF09938.4 gi|433592205|ref|YP_007281701.1| - 0.09 12.1 0.0 0.17 11.2 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2170) MMR_HSR1 PF01926.18 gi|433592205|ref|YP_007281701.1| - 0.12 12.2 0.0 0.26 11.2 0.0 1.6 1 1 0 1 1 1 0 50S ribosome-binding GTPase PduV-EutP PF10662.4 gi|433592205|ref|YP_007281701.1| - 0.2 11.1 0.6 0.59 9.6 0.1 1.8 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation AAA_25 PF13481.1 gi|433592205|ref|YP_007281701.1| - 0.77 9.1 4.6 1.3 8.3 0.6 2.7 2 1 0 2 2 2 0 AAA domain ABC_tran PF00005.22 gi|433592206|ref|YP_007281702.1| - 5.9e-27 94.6 0.0 1.4e-15 57.7 0.0 2.2 2 0 0 2 2 2 2 ABC transporter oligo_HPY PF08352.7 gi|433592206|ref|YP_007281702.1| - 2.5e-20 72.5 0.3 5.1e-20 71.5 0.2 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|433592206|ref|YP_007281702.1| - 4.5e-07 30.1 0.0 8.9e-05 22.5 0.0 2.1 2 0 0 2 2 2 1 AAA domain SMC_N PF02463.14 gi|433592206|ref|YP_007281702.1| - 0.0018 17.5 0.1 0.33 10.1 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|433592206|ref|YP_007281702.1| - 0.0032 17.6 0.1 0.78 9.8 0.0 2.5 3 0 0 3 3 3 1 AAA domain AAA_16 PF13191.1 gi|433592206|ref|YP_007281702.1| - 0.0082 16.1 1.0 0.044 13.7 0.7 2.1 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.1 gi|433592206|ref|YP_007281702.1| - 0.01 15.3 0.1 0.02 14.4 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_10 PF12846.2 gi|433592206|ref|YP_007281702.1| - 0.02 14.3 0.3 0.13 11.7 0.0 2.0 2 0 0 2 2 2 0 AAA-like domain ATP-synt_ab PF00006.20 gi|433592206|ref|YP_007281702.1| - 0.029 13.8 0.0 0.034 13.6 0.0 1.3 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain DUF87 PF01935.12 gi|433592206|ref|YP_007281702.1| - 0.067 12.9 0.1 0.11 12.2 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function DUF87 FtsK_SpoIIIE PF01580.13 gi|433592206|ref|YP_007281702.1| - 0.093 12.1 0.0 0.17 11.3 0.0 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family Sigma54_activat PF00158.21 gi|433592206|ref|YP_007281702.1| - 0.1 12.0 0.1 0.36 10.2 0.0 1.8 2 0 0 2 2 2 0 Sigma-54 interaction domain BPD_transp_1 PF00528.17 gi|433592207|ref|YP_007281703.1| - 1.9e-20 73.1 8.4 1.9e-20 73.1 5.8 3.4 2 1 1 3 3 3 2 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|433592207|ref|YP_007281703.1| - 2e-06 27.0 2.3 9.4e-06 24.9 0.0 3.2 3 0 0 3 3 3 1 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.17 gi|433592208|ref|YP_007281704.1| - 1.2e-36 125.9 11.2 1.2e-36 125.9 7.7 2.1 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_5 PF00496.17 gi|433592209|ref|YP_007281705.1| - 2.5e-70 237.2 3.6 3.1e-70 236.8 2.5 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle Pribosyltran PF00156.22 gi|433592210|ref|YP_007281706.1| - 4.6e-17 61.9 1.5 7.2e-17 61.2 1.1 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|433592210|ref|YP_007281706.1| - 0.00052 19.2 0.1 0.0009 18.5 0.1 1.3 1 1 0 1 1 1 1 Uracil phosphoribosyltransferase CRISPR_Cse2 PF09485.5 gi|433592211|ref|YP_007281707.1| - 0.016 15.2 0.8 0.027 14.5 0.1 1.7 2 0 0 2 2 2 0 CRISPR-associated protein Cse2 (CRISPR_cse2) DFP PF04127.10 gi|433592212|ref|YP_007281708.1| - 8.4e-53 178.7 1.7 1.2e-51 174.9 0.3 2.2 2 0 0 2 2 2 1 DNA / pantothenate metabolism flavoprotein Flavoprotein PF02441.14 gi|433592212|ref|YP_007281708.1| - 1.1e-27 96.2 0.1 2.1e-27 95.3 0.1 1.5 1 0 0 1 1 1 1 Flavoprotein NAD_binding_10 PF13460.1 gi|433592212|ref|YP_007281708.1| - 0.017 15.1 3.8 0.048 13.6 0.4 3.0 3 1 0 3 3 3 0 NADH(P)-binding PALP PF00291.20 gi|433592212|ref|YP_007281708.1| - 0.46 9.6 7.2 1.3 8.1 0.8 2.8 2 1 1 3 3 3 0 Pyridoxal-phosphate dependent enzyme DDE_Tnp_1 PF01609.16 gi|433592213|ref|YP_007281709.1| - 5.6e-20 71.7 0.0 7.7e-20 71.3 0.0 1.1 1 0 0 1 1 1 1 Transposase DDE domain Bactofilin PF04519.8 gi|433592214|ref|YP_007281710.1| - 2.8e-09 36.8 11.3 0.00023 21.0 1.9 2.8 1 1 0 2 2 2 2 Polymer-forming cytoskeletal DUF1628 PF07790.6 gi|433592214|ref|YP_007281710.1| - 9.5e-06 26.2 0.7 9.5e-06 26.2 0.5 2.6 2 1 1 3 3 3 1 Protein of unknown function (DUF1628) LSM PF01423.17 gi|433592214|ref|YP_007281710.1| - 0.32 10.5 3.9 5.9 6.5 1.0 3.3 2 1 0 2 2 2 0 LSM domain DAO PF01266.19 gi|433592215|ref|YP_007281711.1| - 3.1e-11 42.8 6.9 2.2e-05 23.5 0.3 2.1 2 0 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|433592215|ref|YP_007281711.1| - 9.3e-09 35.4 1.4 1.8e-05 24.7 0.1 2.3 1 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|433592215|ref|YP_007281711.1| - 1.9e-08 33.6 3.3 2e-06 26.9 0.8 2.2 2 0 0 2 2 2 2 FAD binding domain FAD_binding_3 PF01494.14 gi|433592215|ref|YP_007281711.1| - 0.00019 20.5 1.0 0.00038 19.6 0.7 1.5 1 0 0 1 1 1 1 FAD binding domain FAD_oxidored PF12831.2 gi|433592215|ref|YP_007281711.1| - 0.0003 19.9 3.8 0.0003 19.9 2.6 2.0 2 1 0 2 2 2 1 FAD dependent oxidoreductase GIDA PF01134.17 gi|433592215|ref|YP_007281711.1| - 0.00038 19.4 0.4 0.00058 18.8 0.3 1.3 1 0 0 1 1 1 1 Glucose inhibited division protein A NAD_binding_8 PF13450.1 gi|433592215|ref|YP_007281711.1| - 0.00043 20.2 1.4 0.00057 19.8 0.1 1.8 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.9 gi|433592215|ref|YP_007281711.1| - 0.00064 18.3 0.1 0.0043 15.5 0.4 1.8 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox_3 PF13738.1 gi|433592215|ref|YP_007281711.1| - 0.0064 16.5 4.2 0.39 10.7 1.1 2.2 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.7 gi|433592215|ref|YP_007281711.1| - 0.038 12.9 1.4 0.19 10.5 0.6 2.0 2 0 0 2 2 2 0 Lycopene cyclase protein Thi4 PF01946.12 gi|433592215|ref|YP_007281711.1| - 0.12 11.4 2.1 0.089 11.8 0.4 1.6 2 0 0 2 2 2 0 Thi4 family Pyr_redox PF00070.22 gi|433592215|ref|YP_007281711.1| - 0.12 12.7 0.5 0.12 12.7 0.4 1.7 2 0 0 2 2 1 0 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.13 gi|433592215|ref|YP_007281711.1| - 0.16 11.6 0.4 0.22 11.1 0.0 1.5 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_9 PF13454.1 gi|433592215|ref|YP_007281711.1| - 1 9.1 3.2 4 7.1 0.0 2.4 1 1 0 2 2 2 0 FAD-NAD(P)-binding Peptidase_M48 PF01435.13 gi|433592216|ref|YP_007281712.1| - 1.7e-20 73.5 0.0 2.4e-20 73.0 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M43 PF05572.8 gi|433592216|ref|YP_007281712.1| - 0.22 11.1 0.0 0.34 10.4 0.0 1.2 1 0 0 1 1 1 0 Pregnancy-associated plasma protein-A Polyketide_cyc2 PF10604.4 gi|433592217|ref|YP_007281713.1| - 6.8e-10 39.2 1.2 9.4e-10 38.8 0.7 1.5 1 1 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc PF03364.15 gi|433592217|ref|YP_007281713.1| - 6.9e-06 26.0 0.5 1.1e-05 25.4 0.4 1.4 1 1 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport GHL13 PF14883.1 gi|433592217|ref|YP_007281713.1| - 0.035 13.2 0.0 0.037 13.1 0.0 1.1 1 0 0 1 1 1 0 Hypothetical glycosyl hydrolase family 13 TrkA_N PF02254.13 gi|433592218|ref|YP_007281714.1| - 6.6e-46 155.0 11.0 2.1e-25 88.9 1.3 2.7 3 0 0 3 3 3 2 TrkA-N domain TrkA_C PF02080.16 gi|433592218|ref|YP_007281714.1| - 1.5e-22 78.9 7.6 1e-11 44.2 0.1 3.5 3 0 0 3 3 3 2 TrkA-C domain Shikimate_DH PF01488.15 gi|433592218|ref|YP_007281714.1| - 5.2e-12 46.0 1.5 2.9e-05 24.1 0.2 3.2 2 1 1 3 3 3 2 Shikimate / quinate 5-dehydrogenase NAD_binding_7 PF13241.1 gi|433592218|ref|YP_007281714.1| - 2.1e-11 43.9 4.1 1.8e-06 28.1 0.9 2.5 2 0 0 2 2 2 2 Putative NAD(P)-binding F420_oxidored PF03807.12 gi|433592218|ref|YP_007281714.1| - 1.5e-07 31.6 3.7 0.0072 16.7 0.3 4.0 3 1 1 4 4 4 2 NADP oxidoreductase coenzyme F420-dependent FAD_binding_3 PF01494.14 gi|433592218|ref|YP_007281714.1| - 7.6e-06 25.2 1.5 0.015 14.3 0.0 2.5 3 0 0 3 3 3 2 FAD binding domain UDPG_MGDP_dh_N PF03721.9 gi|433592218|ref|YP_007281714.1| - 1.8e-05 24.2 0.2 9.5e-05 21.8 0.2 2.2 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3HCDH_N PF02737.13 gi|433592218|ref|YP_007281714.1| - 1.9e-05 24.4 0.4 0.014 15.0 0.1 2.4 2 0 0 2 2 2 2 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.18 gi|433592218|ref|YP_007281714.1| - 0.00031 20.5 0.1 0.038 13.7 0.0 2.7 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ApbA PF02558.11 gi|433592218|ref|YP_007281714.1| - 0.00048 19.6 0.1 0.0017 17.8 0.1 1.9 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA Pyr_redox PF00070.22 gi|433592218|ref|YP_007281714.1| - 0.0006 20.1 4.8 0.13 12.6 0.0 3.2 3 0 0 3 3 2 2 Pyridine nucleotide-disulphide oxidoreductase Saccharop_dh PF03435.13 gi|433592218|ref|YP_007281714.1| - 0.00088 18.3 4.2 0.0057 15.6 1.1 2.2 2 0 0 2 2 2 1 Saccharopine dehydrogenase NAD_binding_2 PF03446.10 gi|433592218|ref|YP_007281714.1| - 0.0015 18.4 0.1 0.031 14.1 0.1 2.3 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase HEM4 PF02602.10 gi|433592218|ref|YP_007281714.1| - 0.0019 17.4 0.2 0.0035 16.6 0.1 1.5 1 0 0 1 1 1 1 Uroporphyrinogen-III synthase HemD CPSase_L_chain PF00289.17 gi|433592218|ref|YP_007281714.1| - 0.004 17.2 0.8 1.6 8.8 0.0 3.2 3 0 0 3 3 3 1 Carbamoyl-phosphate synthase L chain, N-terminal domain AlaDh_PNT_C PF01262.16 gi|433592218|ref|YP_007281714.1| - 0.007 15.9 0.1 4.2 6.8 0.0 2.7 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain GFO_IDH_MocA PF01408.17 gi|433592218|ref|YP_007281714.1| - 0.0092 16.4 2.0 0.9 10.0 0.2 3.1 3 1 0 3 3 3 1 Oxidoreductase family, NAD-binding Rossmann fold Pyr_redox_2 PF07992.9 gi|433592218|ref|YP_007281714.1| - 0.01 15.7 0.1 6.3 6.6 0.0 2.9 2 1 1 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase 2-Hacid_dh_C PF02826.14 gi|433592218|ref|YP_007281714.1| - 0.025 13.7 0.0 4.4 6.4 0.0 2.4 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Rossmann-like PF10727.4 gi|433592218|ref|YP_007281714.1| - 7.6 6.2 7.9 2.5 7.8 1.7 2.7 2 2 0 2 2 2 0 Rossmann-like domain NAD_binding_8 PF13450.1 gi|433592219|ref|YP_007281715.1| - 1.1e-12 47.7 0.1 2.2e-12 46.8 0.1 1.5 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Amino_oxidase PF01593.19 gi|433592219|ref|YP_007281715.1| - 4.3e-07 29.3 4.4 0.00011 21.4 0.2 2.4 1 1 1 2 2 2 2 Flavin containing amine oxidoreductase DAO PF01266.19 gi|433592219|ref|YP_007281715.1| - 0.00098 18.1 2.7 0.0075 15.2 0.1 2.5 3 0 0 3 3 3 1 FAD dependent oxidoreductase Methyltransf_26 PF13659.1 gi|433592219|ref|YP_007281715.1| - 0.11 12.4 0.2 0.29 11.1 0.2 1.7 1 1 0 1 1 1 0 Methyltransferase domain PDH PF02153.12 gi|433592220|ref|YP_007281716.1| - 4.4e-12 45.4 1.0 2.6e-10 39.6 0.7 2.1 1 1 0 1 1 1 1 Prephenate dehydrogenase GFO_IDH_MocA PF01408.17 gi|433592220|ref|YP_007281716.1| - 0.009 16.5 0.5 0.009 16.5 0.3 2.3 2 1 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold 3HCDH_N PF02737.13 gi|433592220|ref|YP_007281716.1| - 0.082 12.5 2.9 0.34 10.5 0.6 2.4 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Methyltransf_23 PF13489.1 gi|433592221|ref|YP_007281717.1| - 8.2e-11 41.8 0.0 1.9e-10 40.6 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|433592221|ref|YP_007281717.1| - 9.2e-09 35.6 0.0 2e-08 34.6 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|433592221|ref|YP_007281717.1| - 1.7e-05 25.3 0.2 4.5e-05 24.0 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Rsm22 PF09243.5 gi|433592221|ref|YP_007281717.1| - 0.00043 19.3 0.0 0.0007 18.7 0.0 1.3 1 0 0 1 1 1 1 Mitochondrial small ribosomal subunit Rsm22 Methyltransf_11 PF08241.7 gi|433592221|ref|YP_007281717.1| - 0.00084 19.7 0.0 0.0029 18.0 0.0 2.0 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|433592221|ref|YP_007281717.1| - 0.023 14.3 0.0 0.64 9.6 0.0 2.3 2 0 0 2 2 2 0 Methyltransferase domain Methyltransf_26 PF13659.1 gi|433592221|ref|YP_007281717.1| - 0.061 13.3 0.9 0.17 11.8 0.6 1.8 1 0 0 1 1 1 0 Methyltransferase domain SurE PF01975.12 gi|433592222|ref|YP_007281718.1| - 7.7e-49 165.6 0.1 1e-48 165.2 0.1 1.1 1 0 0 1 1 1 1 Survival protein SurE EAP30 PF04157.11 gi|433592223|ref|YP_007281719.1| - 0.013 14.7 0.0 0.017 14.2 0.0 1.1 1 0 0 1 1 1 0 EAP30/Vps36 family zinc_ribbon_5 PF13719.1 gi|433592225|ref|YP_007281721.1| - 0.13 11.8 0.3 3.5 7.2 0.0 2.1 2 0 0 2 2 2 0 zinc-ribbon domain CarboxypepD_reg PF13620.1 gi|433592226|ref|YP_007281722.1| - 1.8e-17 63.1 12.4 4.9e-09 36.1 1.1 2.6 2 0 0 2 2 2 2 Carboxypeptidase regulatory-like domain DUF4480 PF13715.1 gi|433592226|ref|YP_007281722.1| - 1.1e-09 38.1 2.6 0.00017 21.5 0.1 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF4480) Big_1 PF02369.11 gi|433592226|ref|YP_007281722.1| - 3.7e-08 33.1 13.1 7e-06 25.8 3.1 2.5 1 1 1 2 2 2 2 Bacterial Ig-like domain (group 1) PEGA PF08308.6 gi|433592226|ref|YP_007281722.1| - 1.8e-07 30.8 0.2 0.02 14.7 0.0 2.5 2 0 0 2 2 2 2 PEGA domain phage_tail_N PF08400.5 gi|433592226|ref|YP_007281722.1| - 1.6e-06 27.8 4.8 0.01 15.5 0.5 2.5 2 0 0 2 2 2 2 Prophage tail fibre N-terminal Cna_B PF05738.8 gi|433592226|ref|YP_007281722.1| - 0.0002 21.0 16.4 0.00036 20.2 1.7 3.4 3 0 0 3 3 3 2 Cna protein B-type domain DUF2606 PF10794.4 gi|433592226|ref|YP_007281722.1| - 0.001 18.4 0.6 0.022 14.1 0.0 2.5 2 1 0 2 2 2 1 Protein of unknown function (DUF2606) DUF1533 PF07550.6 gi|433592226|ref|YP_007281722.1| - 0.012 15.6 0.0 3 7.9 0.0 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF1533) Y_Y_Y PF07495.8 gi|433592226|ref|YP_007281722.1| - 0.019 14.6 0.0 0.49 10.1 0.0 2.9 3 0 0 3 3 3 0 Y_Y_Y domain Big_3_4 PF13754.1 gi|433592226|ref|YP_007281722.1| - 0.04 14.2 1.0 0.04 14.2 0.7 5.3 4 1 0 4 4 4 0 Bacterial Ig-like domain (group 3) EMP24_GP25L PF01105.19 gi|433592226|ref|YP_007281722.1| - 0.075 12.7 4.0 0.25 11.0 0.0 2.6 2 1 1 3 3 3 0 emp24/gp25L/p24 family/GOLD YtkA PF13115.1 gi|433592226|ref|YP_007281722.1| - 0.12 12.7 5.2 1.2 9.5 0.1 3.2 2 1 1 3 3 3 0 YtkA-like A2M_N PF01835.14 gi|433592226|ref|YP_007281722.1| - 0.12 12.6 1.4 12 6.2 0.1 2.7 1 1 1 2 2 2 0 MG2 domain DUF3185 PF11381.3 gi|433592226|ref|YP_007281722.1| - 1.1 9.0 4.4 0.57 9.9 1.4 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3185) SIS PF01380.17 gi|433592227|ref|YP_007281723.1| - 4.7e-45 152.4 0.3 4.1e-24 84.6 0.2 2.3 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.1 gi|433592227|ref|YP_007281723.1| - 5.7e-27 94.2 1.1 4.6e-26 91.3 0.0 2.4 2 0 0 2 2 2 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|433592227|ref|YP_007281723.1| - 2.6e-21 75.7 0.1 1.7e-15 56.6 0.0 2.5 1 1 1 2 2 2 2 Glutamine amidotransferases class-II GATase_7 PF13537.1 gi|433592227|ref|YP_007281723.1| - 6.6e-21 74.3 0.0 1.4e-20 73.2 0.0 1.6 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_4 PF13230.1 gi|433592227|ref|YP_007281723.1| - 0.0002 20.1 0.0 0.00033 19.4 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferases class-II SIS_2 PF13580.1 gi|433592227|ref|YP_007281723.1| - 0.0036 17.0 0.6 0.19 11.4 0.0 2.8 3 0 0 3 3 3 1 SIS domain MarR_2 PF12802.2 gi|433592228|ref|YP_007281724.1| - 2e-07 30.5 0.1 4.5e-07 29.4 0.1 1.5 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|433592228|ref|YP_007281724.1| - 1.7e-06 27.2 0.1 3.4e-06 26.3 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.5 gi|433592228|ref|YP_007281724.1| - 7.3e-05 22.2 0.0 0.00015 21.3 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_23 PF13384.1 gi|433592228|ref|YP_007281724.1| - 0.016 14.8 0.2 0.034 13.8 0.2 1.5 1 0 0 1 1 1 0 Homeodomain-like domain HTH_Crp_2 PF13545.1 gi|433592228|ref|YP_007281724.1| - 0.025 14.3 0.1 0.047 13.4 0.0 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain TrmB PF01978.14 gi|433592228|ref|YP_007281724.1| - 0.029 14.0 0.0 0.047 13.3 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.1 gi|433592228|ref|YP_007281724.1| - 0.041 14.2 0.0 0.08 13.2 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_AsnC-type PF13404.1 gi|433592228|ref|YP_007281724.1| - 0.057 12.9 0.1 0.13 11.8 0.0 1.6 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_31 PF13560.1 gi|433592228|ref|YP_007281724.1| - 0.11 12.7 0.0 0.19 11.9 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain UDPG_MGDP_dh_N PF03721.9 gi|433592229|ref|YP_007281725.1| - 7.4e-43 146.0 0.1 1.9e-42 144.7 0.0 1.7 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.14 gi|433592229|ref|YP_007281725.1| - 4.8e-22 77.9 0.0 1e-21 76.9 0.0 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.10 gi|433592229|ref|YP_007281725.1| - 8e-20 70.9 0.1 5.3e-19 68.3 0.0 2.4 3 0 0 3 3 3 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NAD_Gly3P_dh_N PF01210.18 gi|433592229|ref|YP_007281725.1| - 5.1e-07 29.5 0.0 5.7e-05 22.9 0.0 3.0 3 0 0 3 3 3 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_2 PF03446.10 gi|433592229|ref|YP_007281725.1| - 7.2e-07 29.1 0.0 2.9e-06 27.2 0.0 2.1 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase 3HCDH_N PF02737.13 gi|433592229|ref|YP_007281725.1| - 1.8e-05 24.4 0.1 0.00013 21.6 0.0 2.3 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|433592229|ref|YP_007281725.1| - 0.00017 20.7 0.1 0.038 13.1 0.0 3.0 2 2 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|433592229|ref|YP_007281725.1| - 0.00025 21.4 0.5 0.23 11.9 0.0 3.7 3 1 1 4 4 4 1 NADP oxidoreductase coenzyme F420-dependent TrkA_N PF02254.13 gi|433592229|ref|YP_007281725.1| - 0.0026 17.7 1.8 0.049 13.6 0.1 2.9 3 0 0 3 3 2 1 TrkA-N domain PDH PF02153.12 gi|433592229|ref|YP_007281725.1| - 0.0042 16.0 0.4 0.11 11.4 0.0 2.4 2 1 0 2 2 2 1 Prephenate dehydrogenase ApbA PF02558.11 gi|433592229|ref|YP_007281725.1| - 0.0046 16.4 0.0 0.01 15.2 0.0 1.7 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Methyltransf_18 PF12847.2 gi|433592229|ref|YP_007281725.1| - 0.015 15.8 0.2 0.48 11.0 0.0 2.8 3 0 0 3 3 3 0 Methyltransferase domain ThiF PF00899.16 gi|433592229|ref|YP_007281725.1| - 0.21 11.3 1.2 6.8 6.5 0.2 2.7 2 0 0 2 2 2 0 ThiF family DUF354 PF04007.7 gi|433592230|ref|YP_007281726.1| - 1e-24 87.0 0.0 1.3e-24 86.7 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF354) Glyco_transf_4 PF13439.1 gi|433592230|ref|YP_007281726.1| - 0.00027 20.7 0.4 0.00027 20.7 0.2 1.7 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_2 PF13477.1 gi|433592230|ref|YP_007281726.1| - 0.00047 19.9 0.0 0.00067 19.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_4_4 PF13579.1 gi|433592230|ref|YP_007281726.1| - 0.0016 18.6 2.1 0.0016 18.6 1.5 2.6 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain B12-binding PF02310.14 gi|433592230|ref|YP_007281726.1| - 0.0018 18.1 5.9 0.006 16.4 1.3 2.5 2 0 0 2 2 2 1 B12 binding domain Glyco_transf_28 PF03033.15 gi|433592230|ref|YP_007281726.1| - 0.0049 16.6 1.4 0.016 14.9 0.3 2.1 2 0 0 2 2 2 1 Glycosyltransferase family 28 N-terminal domain Glyco_tran_28_C PF04101.11 gi|433592230|ref|YP_007281726.1| - 0.008 15.8 0.0 0.015 15.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase family 28 C-terminal domain MobB PF03205.9 gi|433592230|ref|YP_007281726.1| - 0.029 14.0 0.0 0.11 12.1 0.0 1.9 2 1 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B Glyco_trans_1_3 PF13528.1 gi|433592230|ref|YP_007281726.1| - 0.053 12.7 3.4 3.8 6.6 2.3 2.7 1 1 0 1 1 1 0 Glycosyl transferase family 1 Glycos_transf_1 PF00534.15 gi|433592231|ref|YP_007281727.1| - 3.8e-13 49.2 0.0 6.8e-13 48.3 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|433592231|ref|YP_007281727.1| - 4.1e-13 49.7 2.8 4.1e-13 49.7 1.9 1.9 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_4 PF13692.1 gi|433592231|ref|YP_007281727.1| - 3.1e-08 33.8 0.0 5.8e-08 32.9 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|433592231|ref|YP_007281727.1| - 0.00051 19.8 0.0 0.0019 18.0 0.0 1.8 1 1 0 1 1 1 1 Glycosyl transferase 4-like Glyco_transf_4 PF13439.1 gi|433592231|ref|YP_007281727.1| - 0.014 15.1 0.0 0.03 14.0 0.0 1.5 1 0 0 1 1 1 0 Glycosyltransferase Family 4 PMT_2 PF13231.1 gi|433592232|ref|YP_007281728.1| - 2.4e-07 30.8 21.6 2.4e-07 30.8 15.0 4.5 3 2 1 4 4 4 1 Dolichyl-phosphate-mannose-protein mannosyltransferase DUF2530 PF10745.4 gi|433592232|ref|YP_007281728.1| - 0.038 13.9 0.3 0.038 13.9 0.2 3.6 4 0 0 4 4 4 0 Protein of unknown function (DUF2530) UPF0164 PF03687.8 gi|433592232|ref|YP_007281728.1| - 0.055 11.9 0.1 0.086 11.3 0.1 1.2 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0164) DUF457 PF04307.9 gi|433592233|ref|YP_007281729.1| - 1.7e-11 43.7 9.2 2.8e-11 42.9 6.4 1.3 1 1 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) DUF1616 PF07760.6 gi|433592234|ref|YP_007281730.1| - 1.4e-56 191.7 0.0 1.7e-56 191.4 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) DUF4131 PF13567.1 gi|433592234|ref|YP_007281730.1| - 0.00067 19.1 2.9 0.0033 16.8 0.6 2.3 1 1 0 2 2 2 1 Domain of unknown function (DUF4131) DUF4231 PF14015.1 gi|433592234|ref|YP_007281730.1| - 0.16 11.9 1.9 3.4 7.7 1.5 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF4231) CopD PF05425.8 gi|433592234|ref|YP_007281730.1| - 0.21 11.7 11.3 0.078 13.1 0.8 2.4 2 0 0 2 2 2 0 Copper resistance protein D HTH_20 PF12840.2 gi|433592235|ref|YP_007281731.1| - 0.003 17.3 0.0 0.87 9.4 0.0 2.3 2 0 0 2 2 2 2 Helix-turn-helix domain Mrr_N PF14338.1 gi|433592235|ref|YP_007281731.1| - 0.046 13.8 0.0 0.14 12.2 0.0 1.8 1 1 0 1 1 1 0 Mrr N-terminal domain DUF3995 PF13160.1 gi|433592236|ref|YP_007281732.1| - 0.04 13.9 0.3 0.17 11.9 0.3 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3995) Asn_synthase PF00733.16 gi|433592237|ref|YP_007281733.1| - 0.00015 21.3 0.0 0.00034 20.2 0.0 1.6 2 0 0 2 2 2 1 Asparagine synthase Polysacc_deac_1 PF01522.16 gi|433592238|ref|YP_007281734.1| - 3.3e-08 33.2 1.0 3.8e-08 32.9 0.1 1.5 2 0 0 2 2 2 1 Polysaccharide deacetylase UCR_Fe-S_N PF10399.4 gi|433592238|ref|YP_007281734.1| - 0.047 12.8 3.2 0.085 12.0 2.2 1.4 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal TAT_signal PF10518.4 gi|433592238|ref|YP_007281734.1| - 0.49 10.5 6.9 0.86 9.7 4.8 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence AstE_AspA PF04952.9 gi|433592239|ref|YP_007281735.1| - 4.7e-15 55.2 0.0 8.4e-15 54.4 0.0 1.4 1 0 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family PKD PF00801.15 gi|433592239|ref|YP_007281735.1| - 7.8e-09 35.1 0.6 2.7e-08 33.4 0.4 2.0 1 0 0 1 1 1 1 PKD domain Peptidase_M14 PF00246.19 gi|433592239|ref|YP_007281735.1| - 0.00018 21.1 0.0 0.63 9.6 0.0 2.2 2 0 0 2 2 2 2 Zinc carboxypeptidase REJ PF02010.10 gi|433592239|ref|YP_007281735.1| - 0.071 11.4 0.1 0.12 10.6 0.1 1.3 1 0 0 1 1 1 0 REJ domain BiPBP_C PF06832.7 gi|433592239|ref|YP_007281735.1| - 0.072 13.0 0.1 0.2 11.5 0.1 1.8 1 0 0 1 1 1 0 Penicillin-Binding Protein C-terminus Family DUF2119 PF09892.4 gi|433592239|ref|YP_007281735.1| - 0.13 11.5 0.0 3.1 7.0 0.0 2.0 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2119) Glycos_transf_2 PF00535.21 gi|433592240|ref|YP_007281736.1| - 2.6e-40 137.8 0.2 1.1e-39 135.8 0.1 1.9 2 1 0 2 2 2 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|433592240|ref|YP_007281736.1| - 2.1e-24 86.6 0.3 3.1e-24 86.0 0.2 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|433592240|ref|YP_007281736.1| - 1.9e-11 43.5 0.0 1.1e-10 41.0 0.0 2.1 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|433592240|ref|YP_007281736.1| - 7.6e-07 29.3 0.2 1.5e-06 28.3 0.1 1.5 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_trans_2_3 PF13632.1 gi|433592240|ref|YP_007281736.1| - 6.9e-06 25.8 0.0 1.1e-05 25.1 0.0 1.4 1 1 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.1 gi|433592240|ref|YP_007281736.1| - 0.00015 21.1 0.0 0.00033 19.9 0.0 1.6 1 1 0 1 1 1 1 Glycosyl transferase family 21 Polysacc_deac_1 PF01522.16 gi|433592241|ref|YP_007281737.1| - 0.019 14.5 0.0 0.035 13.7 0.0 1.4 1 0 0 1 1 1 0 Polysaccharide deacetylase Glycos_transf_2 PF00535.21 gi|433592242|ref|YP_007281738.1| - 5.3e-16 58.7 0.1 6.6e-08 32.4 0.0 2.3 1 1 0 2 2 2 2 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|433592242|ref|YP_007281738.1| - 0.0025 17.6 0.7 0.022 14.5 0.5 2.2 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|433592242|ref|YP_007281738.1| - 0.045 14.0 0.1 0.076 13.3 0.1 1.5 1 1 0 1 1 1 0 Glycosyl transferase family 2 Polysacc_synt_C PF14667.1 gi|433592243|ref|YP_007281739.1| - 2e-17 63.3 12.6 2e-17 63.3 8.8 5.1 4 1 0 5 5 5 2 Polysaccharide biosynthesis C-terminal domain Polysacc_synt PF01943.12 gi|433592243|ref|YP_007281739.1| - 7.2e-17 61.5 20.8 7.2e-17 61.5 14.4 2.2 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_3 PF13440.1 gi|433592243|ref|YP_007281739.1| - 2.4e-11 43.6 28.8 2.4e-11 43.6 19.9 3.4 3 1 0 3 3 3 1 Polysaccharide biosynthesis protein MVIN PF03023.9 gi|433592243|ref|YP_007281739.1| - 6.1e-06 24.9 24.9 6.1e-06 24.9 17.2 1.8 1 1 0 1 1 1 1 MviN-like protein Defensin_big PF14862.1 gi|433592243|ref|YP_007281739.1| - 1.1 9.3 6.1 2.3 8.3 0.1 3.7 2 1 1 3 3 3 0 Big defensin Beta_helix PF13229.1 gi|433592244|ref|YP_007281740.1| - 5.2e-08 32.8 7.1 0.00019 21.2 0.1 3.6 1 1 1 2 2 2 2 Right handed beta helix region HTH_10 PF04967.7 gi|433592245|ref|YP_007281741.1| - 2e-16 59.3 0.0 3e-16 58.7 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4 PF04545.11 gi|433592245|ref|YP_007281741.1| - 1.2e-08 34.0 0.0 2.7e-08 32.9 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 MarR_2 PF12802.2 gi|433592245|ref|YP_007281741.1| - 4.8e-06 26.1 0.0 1.2e-05 24.8 0.0 1.7 1 0 0 1 1 1 1 MarR family Sigma70_r4_2 PF08281.7 gi|433592245|ref|YP_007281741.1| - 1.6e-05 24.2 0.2 0.00014 21.1 0.2 2.1 1 1 0 1 1 1 1 Sigma-70, region 4 HTH_24 PF13412.1 gi|433592245|ref|YP_007281741.1| - 1.7e-05 24.1 0.0 3.1e-05 23.2 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_3 PF01381.17 gi|433592245|ref|YP_007281741.1| - 0.00042 20.1 0.0 0.00089 19.0 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix HTH_AsnC-type PF13404.1 gi|433592245|ref|YP_007281741.1| - 0.00071 19.0 0.3 0.0018 17.7 0.2 1.7 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_31 PF13560.1 gi|433592245|ref|YP_007281741.1| - 0.0017 18.4 0.2 0.0058 16.7 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|433592245|ref|YP_007281741.1| - 0.002 17.7 0.0 0.0034 16.9 0.0 1.4 1 0 0 1 1 1 1 HTH domain HTH_Tnp_4 PF13613.1 gi|433592245|ref|YP_007281741.1| - 0.002 17.6 0.0 0.0041 16.6 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix of DDE superfamily endonuclease Fe_dep_repress PF01325.14 gi|433592245|ref|YP_007281741.1| - 0.0089 15.9 0.0 0.019 14.8 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_23 PF13384.1 gi|433592245|ref|YP_007281741.1| - 0.011 15.3 0.0 0.032 13.8 0.0 1.7 2 0 0 2 2 2 0 Homeodomain-like domain MarR PF01047.17 gi|433592245|ref|YP_007281741.1| - 0.024 14.3 0.0 0.093 12.4 0.0 1.9 1 1 0 1 1 1 0 MarR family HTH_Crp_2 PF13545.1 gi|433592245|ref|YP_007281741.1| - 0.039 13.7 0.0 0.1 12.4 0.0 1.7 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_1 PF00126.22 gi|433592245|ref|YP_007281741.1| - 0.059 13.1 0.1 0.12 12.1 0.1 1.5 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_Tnp_ISL3 PF13542.1 gi|433592245|ref|YP_007281741.1| - 0.059 12.5 0.0 0.12 11.5 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_5 PF01022.15 gi|433592245|ref|YP_007281741.1| - 0.064 12.9 0.0 0.18 11.4 0.0 1.7 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|433592245|ref|YP_007281741.1| - 0.072 12.9 0.0 0.44 10.3 0.0 2.2 2 1 0 2 2 2 0 Helix-turn-helix domain UPF0122 PF04297.9 gi|433592245|ref|YP_007281741.1| - 0.091 12.7 0.1 0.19 11.7 0.1 1.5 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like HTH_37 PF13744.1 gi|433592245|ref|YP_007281741.1| - 0.11 12.2 0.0 0.21 11.4 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain Phage_CI_repr PF07022.8 gi|433592245|ref|YP_007281741.1| - 0.15 12.1 0.0 0.38 10.8 0.0 1.6 1 0 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain Phosphodiest PF01663.17 gi|433592246|ref|YP_007281742.1| - 1.4e-39 136.4 0.0 1.3e-38 133.3 0.0 2.0 2 0 0 2 2 2 1 Type I phosphodiesterase / nucleotide pyrophosphatase Metalloenzyme PF01676.13 gi|433592246|ref|YP_007281742.1| - 2.3e-05 23.9 0.0 0.0021 17.5 0.0 2.3 2 0 0 2 2 2 2 Metalloenzyme superfamily Sulfatase PF00884.18 gi|433592246|ref|YP_007281742.1| - 0.0005 19.3 0.0 2.9 6.9 0.0 3.4 4 0 0 4 4 4 2 Sulfatase PGM_PMM_I PF02878.11 gi|433592247|ref|YP_007281743.1| - 3e-32 110.9 0.4 7e-32 109.7 0.1 1.8 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.11 gi|433592247|ref|YP_007281743.1| - 4.7e-19 68.6 0.2 1.2e-18 67.2 0.1 1.7 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.11 gi|433592247|ref|YP_007281743.1| - 8.3e-17 61.2 0.0 1.7e-16 60.2 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.15 gi|433592247|ref|YP_007281743.1| - 9.2e-09 35.1 0.1 2.3e-08 33.9 0.1 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain Methyltransf_23 PF13489.1 gi|433592247|ref|YP_007281743.1| - 0.065 12.9 0.0 0.13 12.0 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain UPF0146 PF03686.8 gi|433592247|ref|YP_007281743.1| - 0.18 11.6 0.4 32 4.3 0.0 3.1 3 0 0 3 3 3 0 Uncharacterised protein family (UPF0146) Cupin_2 PF07883.6 gi|433592249|ref|YP_007281745.1| - 2.5e-08 33.2 0.6 4.7e-08 32.4 0.2 1.7 2 0 0 2 2 2 1 Cupin domain ARD PF03079.9 gi|433592249|ref|YP_007281745.1| - 0.0044 16.9 0.1 0.015 15.2 0.0 1.8 1 1 1 2 2 2 1 ARD/ARD' family Cupin_6 PF12852.2 gi|433592249|ref|YP_007281745.1| - 0.055 13.0 0.0 0.073 12.6 0.0 1.2 1 0 0 1 1 1 0 Cupin HNH PF01844.18 gi|433592250|ref|YP_007281746.1| - 6.9e-08 32.2 6.4 6.9e-08 32.2 4.4 4.7 6 1 0 6 6 6 1 HNH endonuclease DZR PF12773.2 gi|433592250|ref|YP_007281746.1| - 0.00015 21.4 28.9 7.5 6.4 10.2 5.0 3 2 0 3 3 3 2 Double zinc ribbon zf-C2H2_jaz PF12171.3 gi|433592250|ref|YP_007281746.1| - 0.009 16.1 1.9 0.071 13.2 0.1 3.0 2 0 0 2 2 2 1 Zinc-finger double-stranded RNA-binding HNH_2 PF13391.1 gi|433592250|ref|YP_007281746.1| - 0.018 14.8 1.2 0.048 13.4 0.8 1.7 1 0 0 1 1 1 0 HNH endonuclease UPF0547 PF10571.4 gi|433592250|ref|YP_007281746.1| - 0.031 13.9 6.1 0.51 10.0 0.0 4.5 5 1 0 5 5 5 0 Uncharacterised protein family UPF0547 C1_1 PF00130.17 gi|433592250|ref|YP_007281746.1| - 0.039 13.6 0.5 0.039 13.6 0.4 5.7 4 2 1 5 5 5 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-MYND PF01753.13 gi|433592250|ref|YP_007281746.1| - 0.088 12.6 19.3 18 5.3 0.2 5.1 3 1 1 4 4 4 0 MYND finger FYVE_2 PF02318.11 gi|433592250|ref|YP_007281746.1| - 0.41 10.5 0.1 0.41 10.5 0.1 4.2 3 1 2 5 5 5 0 FYVE-type zinc finger DUF2703 PF10865.3 gi|433592250|ref|YP_007281746.1| - 0.56 10.1 5.2 2.5 8.0 0.0 3.2 3 0 0 3 3 3 0 Domain of unknown function (DUF2703) FYVE PF01363.16 gi|433592250|ref|YP_007281746.1| - 3.2 7.7 33.9 8.1 6.4 0.9 5.3 2 2 0 3 3 3 0 FYVE zinc finger Aminotran_1_2 PF00155.16 gi|433592251|ref|YP_007281747.1| - 8.7e-65 219.0 0.0 9.9e-65 218.8 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|433592251|ref|YP_007281747.1| - 2.9e-08 33.1 0.1 6.8e-08 31.9 0.0 1.5 2 0 0 2 2 2 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.15 gi|433592251|ref|YP_007281747.1| - 1.1e-06 27.2 0.1 1.6e-06 26.6 0.1 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.14 gi|433592251|ref|YP_007281747.1| - 4.1e-05 22.5 0.1 6.8e-05 21.7 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.12 gi|433592251|ref|YP_007281747.1| - 0.00021 20.4 0.9 0.00033 19.8 0.6 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family DMRL_synthase PF00885.14 gi|433592252|ref|YP_007281748.1| - 1.4e-32 112.3 1.8 1.6e-32 112.1 1.3 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase DUF4098 PF13345.1 gi|433592253|ref|YP_007281749.1| - 2.9e-16 59.1 35.4 4.7e-12 45.6 9.6 3.9 3 1 0 4 4 4 3 Domain of unknown function (DUF4098) DUF4097 PF13349.1 gi|433592253|ref|YP_007281749.1| - 2.2e-10 40.3 0.8 2.6e-07 30.3 0.0 3.0 1 1 2 3 3 3 2 Domain of unknown function (DUF4097) DUF3971 PF13116.1 gi|433592253|ref|YP_007281749.1| - 0.012 15.0 0.0 0.017 14.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function SUI1 PF01253.17 gi|433592253|ref|YP_007281749.1| - 0.066 13.0 0.1 0.23 11.3 0.0 1.9 2 0 0 2 2 2 0 Translation initiation factor SUI1 DUF4369 PF14289.1 gi|433592253|ref|YP_007281749.1| - 0.32 11.0 2.4 1.8 8.6 0.0 2.9 2 1 0 2 2 2 0 Domain of unknown function (DUF4369) Crystall_2 PF09076.5 gi|433592253|ref|YP_007281749.1| - 0.53 10.0 4.6 12 5.7 0.3 3.2 3 1 0 4 4 4 0 Beta/Gamma crystallin ATP-grasp PF02222.17 gi|433592254|ref|YP_007281750.1| - 3.4e-53 179.5 0.0 5.2e-53 178.9 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_4 PF13535.1 gi|433592254|ref|YP_007281750.1| - 2.5e-21 76.2 0.4 5.3e-21 75.1 0.3 1.5 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|433592254|ref|YP_007281750.1| - 4.1e-09 35.6 0.0 1.9e-07 30.1 0.0 2.1 2 0 0 2 2 2 1 ATP-grasp in the biosynthetic pathway with Ter operon Dala_Dala_lig_C PF07478.8 gi|433592254|ref|YP_007281750.1| - 6.8e-08 32.1 0.0 4.5e-07 29.4 0.0 1.9 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus ATP-grasp_3 PF02655.9 gi|433592254|ref|YP_007281750.1| - 2.9e-07 30.5 0.0 4e-07 30.0 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain 2-Hacid_dh_C PF02826.14 gi|433592254|ref|YP_007281750.1| - 1.4e-06 27.5 0.0 2.6e-06 26.6 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 3HCDH_N PF02737.13 gi|433592254|ref|YP_007281750.1| - 0.00035 20.2 0.0 0.00065 19.3 0.0 1.5 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain XdhC_C PF13478.1 gi|433592254|ref|YP_007281750.1| - 0.00044 20.5 0.2 0.0013 19.0 0.0 1.9 2 0 0 2 2 2 1 XdhC Rossmann domain RimK PF08443.6 gi|433592254|ref|YP_007281750.1| - 0.001 18.5 0.0 0.0017 17.8 0.0 1.4 1 1 0 1 1 1 1 RimK-like ATP-grasp domain CPSase_L_D2 PF02786.12 gi|433592254|ref|YP_007281750.1| - 0.0011 18.2 0.1 0.0017 17.6 0.1 1.4 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp_5 PF13549.1 gi|433592254|ref|YP_007281750.1| - 0.0072 15.5 0.0 0.018 14.2 0.0 1.6 2 0 0 2 2 2 1 ATP-grasp domain NAD_binding_2 PF03446.10 gi|433592254|ref|YP_007281750.1| - 0.009 15.8 0.0 0.052 13.3 0.0 2.2 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase FAD_binding_3 PF01494.14 gi|433592254|ref|YP_007281750.1| - 0.01 14.9 0.4 0.51 9.3 0.1 2.2 2 0 0 2 2 2 0 FAD binding domain Pyr_redox PF00070.22 gi|433592254|ref|YP_007281750.1| - 0.012 15.9 0.2 0.057 13.8 0.0 2.3 2 0 0 2 2 1 0 Pyridine nucleotide-disulphide oxidoreductase TrkA_N PF02254.13 gi|433592254|ref|YP_007281750.1| - 0.067 13.2 0.0 2 8.4 0.0 2.7 2 1 0 2 2 2 0 TrkA-N domain F420_oxidored PF03807.12 gi|433592254|ref|YP_007281750.1| - 0.07 13.5 0.2 0.26 11.7 0.0 2.1 3 0 0 3 3 1 0 NADP oxidoreductase coenzyme F420-dependent GARS_A PF01071.14 gi|433592254|ref|YP_007281750.1| - 0.11 11.9 0.0 0.19 11.2 0.0 1.3 1 0 0 1 1 1 0 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain NAD_binding_7 PF13241.1 gi|433592254|ref|YP_007281750.1| - 0.13 12.5 0.3 0.83 9.9 0.0 2.2 2 1 0 2 2 2 0 Putative NAD(P)-binding AIRC PF00731.15 gi|433592256|ref|YP_007281752.1| - 9.2e-49 164.5 0.0 1.2e-48 164.2 0.0 1.1 1 0 0 1 1 1 1 AIR carboxylase Oxidored_q4 PF00507.14 gi|433592257|ref|YP_007281753.1| - 2.6e-26 91.4 0.1 3.7e-26 90.9 0.0 1.2 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 DUF3325 PF11804.3 gi|433592257|ref|YP_007281753.1| - 0.8 9.6 8.6 0.25 11.2 2.3 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3325) Oxidored_q6 PF01058.17 gi|433592258|ref|YP_007281754.1| - 7.8e-21 74.0 0.1 1.1e-20 73.5 0.1 1.2 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Complex1_49kDa PF00346.14 gi|433592259|ref|YP_007281755.1| - 3.7e-64 216.3 0.0 1e-42 146.0 0.0 2.1 1 1 1 2 2 2 2 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Complex1_30kDa PF00329.14 gi|433592259|ref|YP_007281755.1| - 5.6e-29 100.4 0.0 9.5e-29 99.6 0.0 1.4 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit NADHdh PF00146.16 gi|433592260|ref|YP_007281756.1| - 1.8e-82 276.9 10.1 2.2e-82 276.6 7.0 1.0 1 0 0 1 1 1 1 NADH dehydrogenase Fer4 PF00037.22 gi|433592261|ref|YP_007281757.1| - 2e-12 46.1 9.6 1.2e-06 27.8 2.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|433592261|ref|YP_007281757.1| - 3.9e-11 43.1 10.7 6.1e-11 42.5 7.4 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|433592261|ref|YP_007281757.1| - 2e-10 40.3 9.1 2.8e-10 39.8 6.3 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|433592261|ref|YP_007281757.1| - 4e-09 36.1 10.6 6.4e-09 35.4 7.4 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|433592261|ref|YP_007281757.1| - 4.5e-09 36.9 4.7 3.5e-05 24.4 0.1 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.1 gi|433592261|ref|YP_007281757.1| - 2.2e-08 34.2 12.0 5.7e-08 32.9 8.4 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|433592261|ref|YP_007281757.1| - 5.2e-08 32.7 10.3 1.6e-07 31.2 7.5 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|433592261|ref|YP_007281757.1| - 5.2e-08 32.4 13.0 0.00037 20.2 1.3 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|433592261|ref|YP_007281757.1| - 1.9e-07 30.5 10.3 0.00025 20.7 0.9 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|433592261|ref|YP_007281757.1| - 4.3e-07 29.7 8.4 0.0015 18.6 1.4 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|433592261|ref|YP_007281757.1| - 1.6e-05 25.1 12.0 0.0075 16.5 8.6 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|433592261|ref|YP_007281757.1| - 8e-05 22.9 11.9 0.018 15.4 1.2 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|433592261|ref|YP_007281757.1| - 0.00011 22.6 4.2 0.26 11.8 0.1 2.5 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|433592261|ref|YP_007281757.1| - 0.00034 20.9 14.8 0.0077 16.7 2.7 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.1 gi|433592261|ref|YP_007281757.1| - 0.022 15.1 11.6 0.32 11.4 0.6 2.9 2 1 0 2 2 2 0 4Fe-4S single cluster domain Oxidored_q3 PF00499.15 gi|433592262|ref|YP_007281758.1| - 5.8e-16 58.5 1.8 7.7e-16 58.1 1.2 1.2 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 DUF4040 PF13244.1 gi|433592262|ref|YP_007281758.1| - 0.00041 20.2 11.0 0.00055 19.8 7.7 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4040) UPF0118 PF01594.11 gi|433592262|ref|YP_007281758.1| - 0.011 14.7 1.9 0.011 14.7 1.3 1.4 2 0 0 2 2 2 0 Domain of unknown function DUF20 Bax1-I PF01027.15 gi|433592262|ref|YP_007281758.1| - 0.02 14.5 5.7 0.025 14.1 3.9 1.2 1 0 0 1 1 1 0 Inhibitor of apoptosis-promoting Bax1 G3P_acyltransf PF02660.10 gi|433592262|ref|YP_007281758.1| - 0.56 9.7 7.2 0.75 9.3 5.0 1.2 1 0 0 1 1 1 0 Glycerol-3-phosphate acyltransferase Glucos_trans_II PF14264.1 gi|433592262|ref|YP_007281758.1| - 1 8.3 9.5 1.2 8.0 6.6 1.0 1 0 0 1 1 1 0 Glucosyl transferase GtrII DUF4191 PF13829.1 gi|433592262|ref|YP_007281758.1| - 2 7.4 4.7 2.7 7.0 3.2 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4191) VirB3 PF05101.8 gi|433592262|ref|YP_007281758.1| - 4.2 7.4 8.6 1.5 8.8 3.4 1.8 1 1 1 2 2 2 0 Type IV secretory pathway, VirB3-like protein Oxidored_q2 PF00420.19 gi|433592264|ref|YP_007281760.1| - 4e-21 74.4 8.7 4.3e-21 74.3 6.1 1.0 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L NicO PF03824.11 gi|433592264|ref|YP_007281760.1| - 0.13 11.5 5.9 0.15 11.3 4.1 1.2 1 0 0 1 1 1 0 High-affinity nickel-transport protein DUF4059 PF13268.1 gi|433592264|ref|YP_007281760.1| - 0.2 11.8 4.9 0.44 10.7 0.0 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF4059) NKAIN PF05640.9 gi|433592264|ref|YP_007281760.1| - 0.36 9.7 2.8 0.41 9.5 2.0 1.2 1 0 0 1 1 1 0 Na,K-Atpase Interacting protein Oxidored_q1 PF00361.15 gi|433592265|ref|YP_007281761.1| - 5e-73 245.6 12.7 5e-73 245.6 8.8 2.1 3 0 0 3 3 3 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1_N PF00662.15 gi|433592265|ref|YP_007281761.1| - 1.6e-10 40.4 0.4 5.8e-10 38.5 0.0 2.1 2 0 0 2 2 2 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Oxidored_q1 PF00361.15 gi|433592266|ref|YP_007281762.1| - 9.3e-69 231.6 18.9 9.3e-69 231.6 13.1 2.4 3 1 0 3 3 3 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q5_N PF01059.12 gi|433592266|ref|YP_007281762.1| - 6.4e-06 26.0 0.6 6.4e-06 26.0 0.4 3.4 5 0 0 5 5 5 1 NADH-ubiquinone oxidoreductase chain 4, amino terminus Oxidored_q1 PF00361.15 gi|433592267|ref|YP_007281763.1| - 1.2e-60 205.0 16.4 1.2e-60 205.0 11.4 2.3 2 1 0 2 2 2 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1_N PF00662.15 gi|433592267|ref|YP_007281763.1| - 0.00011 21.6 1.9 0.00046 19.7 1.3 2.1 1 0 0 1 1 1 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus DHH PF01368.15 gi|433592268|ref|YP_007281764.1| - 1.6e-14 53.8 0.0 2.9e-14 52.9 0.0 1.4 1 0 0 1 1 1 1 DHH family DHHA1 PF02272.14 gi|433592268|ref|YP_007281764.1| - 3.6e-12 45.7 0.3 3.6e-12 45.7 0.2 2.3 3 0 0 3 3 3 1 DHHA1 domain TrkA_N PF02254.13 gi|433592268|ref|YP_007281764.1| - 5.4e-10 39.2 0.0 1.6e-09 37.7 0.0 1.8 1 0 0 1 1 1 1 TrkA-N domain CBS PF00571.23 gi|433592269|ref|YP_007281765.1| - 2.4e-26 91.2 4.7 1.5e-12 47.0 0.0 2.9 3 0 0 3 3 3 2 CBS domain ParBc PF02195.13 gi|433592269|ref|YP_007281765.1| - 3.4e-08 33.4 0.2 8.3e-08 32.2 0.1 1.7 1 1 0 1 1 1 1 ParB-like nuclease domain ParBc_2 PF08857.6 gi|433592269|ref|YP_007281765.1| - 0.0018 18.1 0.1 0.021 14.6 0.1 2.2 1 1 0 1 1 1 1 Putative ParB-like nuclease Dehyd-heme_bind PF09098.5 gi|433592269|ref|YP_007281765.1| - 0.011 15.1 0.1 0.017 14.6 0.0 1.3 1 0 0 1 1 1 0 Quinohemoprotein amine dehydrogenase A, alpha subunit, haem binding GatB_N PF02934.10 gi|433592270|ref|YP_007281766.1| - 9.3e-111 369.3 0.0 1.5e-110 368.6 0.0 1.2 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.13 gi|433592270|ref|YP_007281766.1| - 6.1e-41 139.5 0.0 9e-41 139.0 0.0 1.3 1 0 0 1 1 1 1 GatB domain Antitoxin-MazE PF04014.13 gi|433592271|ref|YP_007281767.1| - 0.00013 21.6 0.1 0.00019 21.0 0.0 1.3 1 0 0 1 1 1 1 Antidote-toxin recognition MazE PIN PF01850.16 gi|433592272|ref|YP_007281768.1| - 7.9e-19 68.1 1.4 8.9e-19 68.0 0.9 1.0 1 0 0 1 1 1 1 PIN domain AMP-binding PF00501.23 gi|433592273|ref|YP_007281769.1| - 4.5e-81 272.3 0.0 5.6e-81 272.0 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|433592273|ref|YP_007281769.1| - 1.6e-17 64.2 0.1 3.1e-17 63.2 0.1 1.5 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain adh_short PF00106.20 gi|433592274|ref|YP_007281770.1| - 8.1e-21 74.6 0.1 1.2e-20 74.1 0.1 1.2 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|433592274|ref|YP_007281770.1| - 3.3e-06 27.0 0.0 4.3e-06 26.6 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|433592274|ref|YP_007281770.1| - 0.0013 18.3 0.2 0.0019 17.8 0.1 1.4 1 1 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|433592274|ref|YP_007281770.1| - 0.0027 17.2 0.0 0.0036 16.7 0.0 1.4 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family Eno-Rase_NADH_b PF12242.3 gi|433592274|ref|YP_007281770.1| - 0.0041 16.8 0.0 0.01 15.6 0.0 1.6 1 0 0 1 1 1 1 NAD(P)H binding domain of trans-2-enoyl-CoA reductase PAS_9 PF13426.1 gi|433592275|ref|YP_007281771.1| - 7.8e-69 228.6 5.7 9.4e-19 67.7 0.0 6.4 6 0 0 6 6 6 6 PAS domain PAS_4 PF08448.5 gi|433592275|ref|YP_007281771.1| - 2.6e-62 207.6 23.9 1.6e-11 44.1 0.6 6.6 6 0 0 6 6 6 6 PAS fold PAS PF00989.19 gi|433592275|ref|YP_007281771.1| - 7e-36 122.4 7.4 7.5e-13 48.2 0.1 6.1 5 1 1 6 6 6 4 PAS fold HATPase_c PF02518.21 gi|433592275|ref|YP_007281771.1| - 2.2e-28 98.1 0.0 5.9e-28 96.8 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.1 gi|433592275|ref|YP_007281771.1| - 2.1e-20 71.7 5.1 5.7e-06 26.0 0.1 6.6 6 0 0 6 6 6 3 PAS domain PAS_3 PF08447.6 gi|433592275|ref|YP_007281771.1| - 2.9e-18 65.7 4.6 3.1e-06 27.1 0.0 6.2 6 0 0 6 6 6 3 PAS fold HisKA PF00512.20 gi|433592275|ref|YP_007281771.1| - 3.6e-10 39.6 2.5 9.5e-10 38.3 0.0 3.3 3 1 0 3 3 2 1 His Kinase A (phospho-acceptor) domain PAS_7 PF12860.2 gi|433592275|ref|YP_007281771.1| - 4.4e-07 29.9 7.8 2.9 7.9 0.1 7.7 6 1 1 7 7 7 1 PAS fold PAS_10 PF13596.1 gi|433592275|ref|YP_007281771.1| - 3.4e-06 27.2 0.1 1 9.6 0.0 4.7 5 0 0 5 5 5 2 PAS domain HATPase_c_5 PF14501.1 gi|433592275|ref|YP_007281771.1| - 0.00087 18.9 0.0 0.0016 18.0 0.0 1.4 1 0 0 1 1 1 1 GHKL domain HATPase_c_2 PF13581.1 gi|433592275|ref|YP_007281771.1| - 0.02 14.6 0.2 0.02 14.6 0.1 2.1 2 0 0 2 2 2 0 Histidine kinase-like ATPase domain PilJ PF13675.1 gi|433592275|ref|YP_007281771.1| - 0.19 12.0 2.3 0.89 9.8 0.1 3.1 3 0 0 3 3 3 0 Type IV pili methyl-accepting chemotaxis transducer N-term Peptidase_M48 PF01435.13 gi|433592276|ref|YP_007281772.1| - 1.7e-15 57.1 1.1 1.1e-14 54.5 0.8 2.2 1 1 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.6 gi|433592276|ref|YP_007281772.1| - 0.0011 18.0 0.0 0.0018 17.3 0.0 1.3 1 0 0 1 1 1 1 BlaR1 peptidase M56 SprT-like PF10263.4 gi|433592276|ref|YP_007281772.1| - 0.015 14.9 0.0 0.023 14.3 0.0 1.2 1 0 0 1 1 1 0 SprT-like family DUF2201_N PF13203.1 gi|433592276|ref|YP_007281772.1| - 0.046 12.9 0.0 0.073 12.2 0.0 1.2 1 0 0 1 1 1 0 Putative metallopeptidase domain Peptidase_MA_2 PF13485.1 gi|433592276|ref|YP_007281772.1| - 0.15 12.0 0.0 0.29 11.1 0.0 1.4 1 0 0 1 1 1 0 Peptidase MA superfamily TrbL PF04610.9 gi|433592276|ref|YP_007281772.1| - 1.8 8.2 8.9 0.053 13.2 1.9 1.5 2 0 0 2 2 2 0 TrbL/VirB6 plasmid conjugal transfer protein SlyX PF04102.7 gi|433592277|ref|YP_007281773.1| - 1.6e-05 25.2 0.1 2.6e-05 24.4 0.1 1.5 1 0 0 1 1 1 1 SlyX Tropomyosin PF00261.15 gi|433592277|ref|YP_007281773.1| - 0.00016 20.8 2.0 0.00016 20.8 1.4 1.8 2 0 0 2 2 2 1 Tropomyosin FlaC_arch PF05377.6 gi|433592277|ref|YP_007281773.1| - 0.066 13.1 1.0 0.1 12.5 0.7 1.3 1 0 0 1 1 1 0 Flagella accessory protein C (FlaC) PspB PF06667.7 gi|433592277|ref|YP_007281773.1| - 0.072 13.0 1.1 0.3 11.0 0.4 1.9 1 1 1 2 2 2 0 Phage shock protein B Striatin PF08232.7 gi|433592277|ref|YP_007281773.1| - 0.12 12.7 0.3 0.15 12.3 0.2 1.1 1 0 0 1 1 1 0 Striatin family DUF2730 PF10805.3 gi|433592277|ref|YP_007281773.1| - 0.16 11.7 0.6 0.22 11.2 0.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2730) IFP_35_N PF07334.8 gi|433592277|ref|YP_007281773.1| - 0.19 11.7 0.7 0.3 11.0 0.3 1.7 1 1 1 2 2 2 0 Interferon-induced 35 kDa protein (IFP 35) N-terminus Pox_A_type_inc PF04508.7 gi|433592277|ref|YP_007281773.1| - 0.6 10.0 3.4 0.62 9.9 0.9 2.0 2 0 0 2 2 2 0 Viral A-type inclusion protein repeat TMF_DNA_bd PF12329.3 gi|433592277|ref|YP_007281773.1| - 0.63 9.8 4.9 0.12 12.2 0.8 1.6 2 0 0 2 2 2 0 TATA element modulatory factor 1 DNA binding KfrA_N PF11740.3 gi|433592277|ref|YP_007281773.1| - 0.63 10.4 6.9 0.96 9.9 0.6 2.1 2 0 0 2 2 2 0 Plasmid replication region DNA-binding N-term Rab5-bind PF09311.6 gi|433592277|ref|YP_007281773.1| - 3.9 7.3 6.9 8.5 6.2 4.8 1.6 1 1 0 1 1 1 0 Rabaptin-like protein PspA_IM30 PF04012.7 gi|433592277|ref|YP_007281773.1| - 5.5 6.2 7.7 25 4.1 5.3 1.8 1 1 0 1 1 1 0 PspA/IM30 family HrpB7 PF09486.5 gi|433592277|ref|YP_007281773.1| - 5.6 6.8 7.3 1.1 9.1 2.6 1.7 1 1 1 2 2 2 0 Bacterial type III secretion protein (HrpB7) SMC_N PF02463.14 gi|433592278|ref|YP_007281774.1| - 1.5e-51 174.7 47.2 6.9e-51 172.5 32.7 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain SMC_hinge PF06470.8 gi|433592278|ref|YP_007281774.1| - 2.6e-31 108.0 0.1 1.2e-30 105.8 0.0 2.3 2 0 0 2 2 2 1 SMC proteins Flexible Hinge Domain AAA_13 PF13166.1 gi|433592278|ref|YP_007281774.1| - 3.5e-14 52.2 103.5 4.5e-05 22.1 16.3 6.8 3 2 4 7 7 7 6 AAA domain Reo_sigmaC PF04582.7 gi|433592278|ref|YP_007281774.1| - 3.1e-13 49.6 21.6 6.5e-06 25.5 0.3 5.5 2 2 2 5 5 5 4 Reovirus sigma C capsid protein AAA_21 PF13304.1 gi|433592278|ref|YP_007281774.1| - 5.4e-12 46.2 0.9 2.8e-06 27.5 0.3 4.3 3 2 0 3 3 2 2 AAA domain IncA PF04156.9 gi|433592278|ref|YP_007281774.1| - 1.4e-07 31.2 150.6 0.0064 16.1 12.9 8.4 3 2 5 8 8 8 6 IncA protein GAS PF13851.1 gi|433592278|ref|YP_007281774.1| - 2.4e-06 26.9 121.8 0.0017 17.5 10.4 8.2 4 3 4 8 8 8 4 Growth-arrest specific micro-tubule binding AAA_29 PF13555.1 gi|433592278|ref|YP_007281774.1| - 3.1e-06 26.6 0.7 6.5e-06 25.5 0.0 1.8 2 0 0 2 2 1 1 P-loop containing region of AAA domain Spc7 PF08317.6 gi|433592278|ref|YP_007281774.1| - 6.5e-06 25.0 118.4 0.0035 16.0 12.1 7.9 2 2 5 7 7 7 5 Spc7 kinetochore protein AAA_15 PF13175.1 gi|433592278|ref|YP_007281774.1| - 2.1e-05 23.7 0.0 3e-05 23.2 0.0 4.1 4 0 0 4 4 2 2 AAA ATPase domain CENP-F_leu_zip PF10473.4 gi|433592278|ref|YP_007281774.1| - 9.4e-05 22.2 150.7 0.0021 17.9 13.1 8.6 2 2 6 8 8 7 6 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 MscS_porin PF12795.2 gi|433592278|ref|YP_007281774.1| - 0.00017 21.0 107.3 0.0004 19.7 7.1 5.8 3 2 3 6 6 6 2 Mechanosensitive ion channel porin domain DUF3584 PF12128.3 gi|433592278|ref|YP_007281774.1| - 0.00021 18.8 46.2 0.00021 18.8 32.0 4.1 2 2 2 4 4 4 2 Protein of unknown function (DUF3584) Laminin_II PF06009.7 gi|433592278|ref|YP_007281774.1| - 0.00051 19.8 67.2 0.019 14.7 4.5 8.6 4 2 4 9 9 9 4 Laminin Domain II ADIP PF11559.3 gi|433592278|ref|YP_007281774.1| - 0.0037 17.1 8.5 0.0037 17.1 5.9 9.0 2 2 7 9 9 9 2 Afadin- and alpha -actinin-Binding Fib_alpha PF08702.5 gi|433592278|ref|YP_007281774.1| - 0.0043 17.1 4.9 0.0043 17.1 3.4 7.1 2 2 5 7 7 7 3 Fibrinogen alpha/beta chain family Cortex-I_coil PF09304.5 gi|433592278|ref|YP_007281774.1| - 0.0052 16.7 31.5 0.0078 16.2 7.4 10.6 3 2 8 11 11 9 3 Cortexillin I, coiled coil AAA_23 PF13476.1 gi|433592278|ref|YP_007281774.1| - 0.0054 17.0 132.6 1.1e+03 -0.4 49.4 8.1 2 2 0 2 2 1 0 AAA domain HrpB7 PF09486.5 gi|433592278|ref|YP_007281774.1| - 0.0077 16.1 3.4 0.0077 16.1 2.3 9.0 4 2 5 9 9 7 2 Bacterial type III secretion protein (HrpB7) Atg14 PF10186.4 gi|433592278|ref|YP_007281774.1| - 0.011 14.7 105.3 0.014 14.3 10.7 7.8 2 2 6 8 8 8 0 UV radiation resistance protein and autophagy-related subunit 14 Baculo_PEP_C PF04513.7 gi|433592278|ref|YP_007281774.1| - 0.032 14.0 33.0 0.1 12.4 1.6 7.3 4 2 2 7 7 6 0 Baculovirus polyhedron envelope protein, PEP, C terminus ERM PF00769.14 gi|433592278|ref|YP_007281774.1| - 0.071 12.6 144.4 0.037 13.5 14.8 5.5 2 2 3 5 5 5 0 Ezrin/radixin/moesin family Mnd1 PF03962.10 gi|433592278|ref|YP_007281774.1| - 0.089 12.4 119.2 0.013 15.1 9.9 8.9 2 2 6 8 8 7 0 Mnd1 family BLOC1_2 PF10046.4 gi|433592278|ref|YP_007281774.1| - 0.093 12.8 0.1 0.093 12.8 0.1 10.3 5 4 5 10 10 10 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 APG6 PF04111.7 gi|433592278|ref|YP_007281774.1| - 0.13 11.2 140.4 0.018 14.0 11.6 7.4 2 2 6 8 8 8 0 Autophagy protein Apg6 EzrA PF06160.7 gi|433592278|ref|YP_007281774.1| - 0.35 9.0 103.7 0.03 12.5 7.7 4.7 2 2 2 4 4 3 0 Septation ring formation regulator, EzrA TPR_MLP1_2 PF07926.7 gi|433592278|ref|YP_007281774.1| - 0.6 9.8 120.4 0.15 11.8 12.8 7.6 4 2 2 6 6 6 0 TPR/MLP1/MLP2-like protein ATG16 PF08614.6 gi|433592278|ref|YP_007281774.1| - 0.97 9.2 133.0 0.028 14.2 2.9 9.2 3 2 5 9 9 8 0 Autophagy protein 16 (ATG16) FliJ PF02050.11 gi|433592278|ref|YP_007281774.1| - 4.9 7.2 94.4 0.07 13.1 2.7 8.5 4 2 4 8 8 8 0 Flagellar FliJ protein DUF1664 PF07889.7 gi|433592278|ref|YP_007281774.1| - 5.8 6.7 76.6 0.04 13.7 2.5 9.5 3 2 7 10 10 10 0 Protein of unknown function (DUF1664) FliD_N PF02465.13 gi|433592278|ref|YP_007281774.1| - 7.5 6.9 22.7 33 4.9 0.1 7.4 5 2 3 8 8 7 0 Flagellar hook-associated protein 2 N-terminus ScpA_ScpB PF02616.9 gi|433592279|ref|YP_007281775.1| - 3.9e-25 88.8 0.0 2.1e-24 86.4 0.0 2.1 1 1 0 1 1 1 1 ScpA/B protein Spo0M PF07070.6 gi|433592280|ref|YP_007281776.1| - 1.9e-58 197.4 0.0 2.2e-58 197.1 0.0 1.1 1 0 0 1 1 1 1 SpoOM protein DUF879 PF05947.7 gi|433592280|ref|YP_007281776.1| - 0.1 10.9 0.1 0.17 10.1 0.1 1.3 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF879) Pribosyltran PF00156.22 gi|433592281|ref|YP_007281777.1| - 2.5e-19 69.2 0.0 4.4e-19 68.4 0.0 1.4 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|433592281|ref|YP_007281777.1| - 0.026 13.7 0.0 0.036 13.2 0.0 1.2 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase ThiC PF01964.13 gi|433592282|ref|YP_007281778.1| - 3e-193 642.0 0.0 3.4e-193 641.9 0.0 1.0 1 0 0 1 1 1 1 ThiC family zinc_ribbon_2 PF13240.1 gi|433592282|ref|YP_007281778.1| - 0.034 13.6 0.2 0.064 12.7 0.1 1.5 1 0 0 1 1 1 0 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|433592282|ref|YP_007281778.1| - 0.072 12.3 0.3 0.14 11.4 0.2 1.4 1 0 0 1 1 1 0 zinc-ribbon domain Abhydrolase_6 PF12697.2 gi|433592283|ref|YP_007281779.1| - 2.2e-14 53.8 4.1 2.2e-14 53.8 2.8 1.7 3 0 0 3 3 3 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|433592283|ref|YP_007281779.1| - 1.1e-13 51.1 0.0 4.1e-13 49.3 0.0 2.0 1 1 1 2 2 2 1 Alpha/beta hydrolase family DLH PF01738.13 gi|433592283|ref|YP_007281779.1| - 1.9e-05 24.0 0.0 0.019 14.2 0.0 2.5 2 1 0 2 2 2 2 Dienelactone hydrolase family Peptidase_S9 PF00326.16 gi|433592283|ref|YP_007281779.1| - 0.043 13.0 0.0 3.7 6.7 0.0 2.2 2 0 0 2 2 2 0 Prolyl oligopeptidase family AXE1 PF05448.7 gi|433592283|ref|YP_007281779.1| - 0.058 11.8 0.0 0.093 11.2 0.0 1.2 1 0 0 1 1 1 0 Acetyl xylan esterase (AXE1) PhzC-PhzF PF02567.11 gi|433592284|ref|YP_007281780.1| - 2.8e-66 223.6 0.0 3.1e-66 223.4 0.0 1.0 1 0 0 1 1 1 1 Phenazine biosynthesis-like protein Pro_racemase PF05544.6 gi|433592284|ref|YP_007281780.1| - 0.036 12.9 0.0 0.058 12.2 0.0 1.3 1 0 0 1 1 1 0 Proline racemase PPDK_N PF01326.14 gi|433592286|ref|YP_007281782.1| - 2e-108 362.3 4.4 3.2e-108 361.6 3.0 1.4 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers_C PF02896.13 gi|433592286|ref|YP_007281782.1| - 1.4e-82 276.8 0.0 2e-82 276.3 0.0 1.2 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilizers PF00391.18 gi|433592286|ref|YP_007281782.1| - 1.4e-27 95.0 2.1 3.7e-27 93.6 1.5 1.8 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain HTH_5 PF01022.15 gi|433592288|ref|YP_007281784.1| - 1.6e-19 69.2 0.1 1.3e-16 59.9 0.1 2.5 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|433592288|ref|YP_007281784.1| - 2.4e-16 59.2 0.5 2.2e-12 46.5 0.1 2.5 2 0 0 2 2 2 2 Helix-turn-helix domain TrmB PF01978.14 gi|433592288|ref|YP_007281784.1| - 7e-13 48.0 0.2 5.8e-06 25.9 0.0 2.3 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|433592288|ref|YP_007281784.1| - 9.3e-13 47.6 1.6 1.3e-08 34.3 0.1 2.4 2 0 0 2 2 2 2 MarR family HTH_24 PF13412.1 gi|433592288|ref|YP_007281784.1| - 1.5e-11 43.4 0.1 1.9e-09 36.7 0.0 2.4 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR PF01047.17 gi|433592288|ref|YP_007281784.1| - 1.8e-07 30.7 0.6 3.4e-06 26.6 0.0 2.5 3 0 0 3 3 2 1 MarR family HTH_27 PF13463.1 gi|433592288|ref|YP_007281784.1| - 2.1e-07 31.1 0.2 1.2e-05 25.5 0.0 2.7 2 1 1 3 3 3 1 Winged helix DNA-binding domain Rrf2 PF02082.15 gi|433592288|ref|YP_007281784.1| - 7.6e-07 29.1 0.0 0.0012 18.9 0.0 2.3 2 0 0 2 2 2 2 Transcriptional regulator HTH_IclR PF09339.5 gi|433592288|ref|YP_007281784.1| - 6.1e-06 25.7 0.8 0.0089 15.5 0.0 3.2 3 1 0 3 3 3 2 IclR helix-turn-helix domain HTH_11 PF08279.7 gi|433592288|ref|YP_007281784.1| - 2.1e-05 24.1 0.0 4.5e-05 23.0 0.0 1.6 1 0 0 1 1 1 1 HTH domain Fe_dep_repress PF01325.14 gi|433592288|ref|YP_007281784.1| - 2.7e-05 24.0 0.0 7.4e-05 22.6 0.0 1.7 2 0 0 2 2 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_Crp_2 PF13545.1 gi|433592288|ref|YP_007281784.1| - 6.9e-05 22.5 0.0 0.0012 18.6 0.0 2.5 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_CodY PF08222.6 gi|433592288|ref|YP_007281784.1| - 0.00012 21.3 0.1 0.00029 20.0 0.0 1.6 2 0 0 2 2 1 1 CodY helix-turn-helix domain FeoC PF09012.5 gi|433592288|ref|YP_007281784.1| - 0.00034 20.2 0.0 0.19 11.4 0.0 2.9 3 0 0 3 3 3 1 FeoC like transcriptional regulator PadR PF03551.9 gi|433592288|ref|YP_007281784.1| - 0.0004 20.0 0.1 0.0032 17.1 0.0 2.5 2 1 0 2 2 2 1 Transcriptional regulator PadR-like family DUF742 PF05331.6 gi|433592288|ref|YP_007281784.1| - 0.00061 19.3 0.2 0.32 10.6 0.1 2.3 2 1 0 2 2 2 1 Protein of unknown function (DUF742) HxlR PF01638.12 gi|433592288|ref|YP_007281784.1| - 0.0007 19.1 0.0 0.021 14.4 0.0 2.3 2 0 0 2 2 2 1 HxlR-like helix-turn-helix HTH_45 PF14947.1 gi|433592288|ref|YP_007281784.1| - 0.0017 18.1 0.0 1.1 9.0 0.0 2.3 2 0 0 2 2 2 1 Winged helix-turn-helix HTH_10 PF04967.7 gi|433592288|ref|YP_007281784.1| - 0.0018 17.8 0.0 0.0057 16.2 0.0 1.9 2 0 0 2 2 1 1 HTH DNA binding domain GntR PF00392.16 gi|433592288|ref|YP_007281784.1| - 0.003 16.9 0.2 0.095 12.1 0.0 2.7 2 1 0 2 2 2 1 Bacterial regulatory proteins, gntR family LexA_DNA_bind PF01726.11 gi|433592288|ref|YP_007281784.1| - 0.0031 17.0 0.0 0.026 14.0 0.0 2.3 2 0 0 2 2 2 1 LexA DNA binding domain Sulfolobus_pRN PF05584.6 gi|433592288|ref|YP_007281784.1| - 0.004 17.0 0.2 1.6 8.7 0.0 2.6 3 0 0 3 3 2 1 Sulfolobus plasmid regulatory protein HTH_23 PF13384.1 gi|433592288|ref|YP_007281784.1| - 0.0044 16.6 0.1 0.013 15.1 0.1 1.7 1 0 0 1 1 1 1 Homeodomain-like domain DUF2250 PF10007.4 gi|433592288|ref|YP_007281784.1| - 0.0049 16.7 0.0 0.21 11.5 0.0 2.2 2 0 0 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2250) DUF2513 PF10711.4 gi|433592288|ref|YP_007281784.1| - 0.0098 15.9 0.1 0.043 13.8 0.0 2.0 3 0 0 3 3 2 1 Hypothetical protein (DUF2513) ArsR PF09824.4 gi|433592288|ref|YP_007281784.1| - 0.012 14.9 0.0 0.038 13.3 0.0 1.7 2 1 1 3 3 3 0 ArsR transcriptional regulator HTH_AsnC-type PF13404.1 gi|433592288|ref|YP_007281784.1| - 0.012 15.0 0.1 0.16 11.5 0.1 2.8 2 1 0 2 2 2 0 AsnC-type helix-turn-helix domain DUF4423 PF14394.1 gi|433592288|ref|YP_007281784.1| - 0.017 14.6 0.0 4.1 6.9 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4423) DDRGK PF09756.4 gi|433592288|ref|YP_007281784.1| - 0.019 14.4 0.0 0.03 13.7 0.0 1.3 1 0 0 1 1 1 0 DDRGK domain HTH_34 PF13601.1 gi|433592288|ref|YP_007281784.1| - 0.03 14.3 0.0 0.09 12.8 0.0 1.8 2 0 0 2 2 2 0 Winged helix DNA-binding domain GPP34 PF05719.6 gi|433592288|ref|YP_007281784.1| - 0.036 14.1 1.2 0.044 13.8 0.2 1.6 2 0 0 2 2 2 0 Golgi phosphoprotein 3 (GPP34) HTH_36 PF13730.1 gi|433592288|ref|YP_007281784.1| - 0.046 13.8 0.0 0.097 12.8 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_28 PF13518.1 gi|433592288|ref|YP_007281784.1| - 0.056 13.4 0.3 0.14 12.2 0.2 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain IF2_N PF04760.10 gi|433592288|ref|YP_007281784.1| - 0.11 12.1 0.0 0.95 9.1 0.0 2.2 2 0 0 2 2 2 0 Translation initiation factor IF-2, N-terminal region B-block_TFIIIC PF04182.7 gi|433592288|ref|YP_007281784.1| - 0.15 11.9 0.0 0.27 11.1 0.0 1.4 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC Cucumo_2B PF03263.8 gi|433592288|ref|YP_007281784.1| - 0.16 12.2 0.5 0.52 10.6 0.0 2.0 1 1 1 2 2 2 0 Cucumovirus protein 2B DUF4200 PF13863.1 gi|433592289|ref|YP_007281785.1| - 0.0045 16.9 2.3 0.0064 16.4 1.6 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4200) ATG16 PF08614.6 gi|433592289|ref|YP_007281785.1| - 0.013 15.2 2.3 0.021 14.6 1.6 1.2 1 0 0 1 1 1 0 Autophagy protein 16 (ATG16) DUF3450 PF11932.3 gi|433592289|ref|YP_007281785.1| - 0.023 13.9 0.2 0.029 13.6 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3450) CENP-F_leu_zip PF10473.4 gi|433592289|ref|YP_007281785.1| - 0.025 14.4 2.3 0.037 13.8 1.6 1.2 1 0 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 APG6 PF04111.7 gi|433592289|ref|YP_007281785.1| - 0.059 12.4 0.9 0.076 12.0 0.7 1.1 1 0 0 1 1 1 0 Autophagy protein Apg6 M PF02370.11 gi|433592289|ref|YP_007281785.1| - 0.063 13.6 0.5 0.38 11.2 0.1 2.3 2 0 0 2 2 2 0 M protein repeat DUF342 PF03961.8 gi|433592289|ref|YP_007281785.1| - 0.081 11.3 0.3 0.1 10.9 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF342) Enkurin PF13864.1 gi|433592289|ref|YP_007281785.1| - 0.13 12.4 1.7 0.18 12.0 1.2 1.2 1 0 0 1 1 1 0 Calmodulin-binding GAS PF13851.1 gi|433592289|ref|YP_007281785.1| - 0.28 10.3 1.6 0.72 9.0 1.2 1.5 1 1 0 1 1 1 0 Growth-arrest specific micro-tubule binding ADIP PF11559.3 gi|433592289|ref|YP_007281785.1| - 0.38 10.6 3.7 0.73 9.7 2.1 1.6 1 1 0 1 1 1 0 Afadin- and alpha -actinin-Binding IncA PF04156.9 gi|433592289|ref|YP_007281785.1| - 0.96 9.0 13.6 8.8 5.8 9.4 1.9 1 1 0 1 1 1 0 IncA protein TMF_DNA_bd PF12329.3 gi|433592289|ref|YP_007281785.1| - 0.96 9.2 3.7 2.6 7.9 1.0 2.2 1 1 1 2 2 2 0 TATA element modulatory factor 1 DNA binding DUF1192 PF06698.6 gi|433592289|ref|YP_007281785.1| - 1.3 8.9 7.7 0.62 9.9 0.5 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF1192) Sugarporin_N PF11471.3 gi|433592289|ref|YP_007281785.1| - 9.2 6.0 9.1 6.5 6.4 0.0 3.1 3 1 0 3 3 3 0 Maltoporin periplasmic N-terminal extension bZIP_2 PF07716.10 gi|433592291|ref|YP_007281787.1| - 1.8e-05 24.4 7.9 0.021 14.6 0.4 2.5 2 0 0 2 2 2 2 Basic region leucine zipper Tropomyosin_1 PF12718.2 gi|433592291|ref|YP_007281787.1| - 0.0021 17.8 7.6 0.0055 16.5 5.3 1.6 1 0 0 1 1 1 1 Tropomyosin like Mnd1 PF03962.10 gi|433592291|ref|YP_007281787.1| - 0.0022 17.6 4.8 0.0034 17.0 3.3 1.2 1 0 0 1 1 1 1 Mnd1 family MscS_porin PF12795.2 gi|433592291|ref|YP_007281787.1| - 0.0025 17.1 1.1 0.0036 16.6 0.8 1.2 1 0 0 1 1 1 1 Mechanosensitive ion channel porin domain DUF3450 PF11932.3 gi|433592291|ref|YP_007281787.1| - 0.0039 16.4 5.2 0.0044 16.3 2.6 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF3450) eRF1_2 PF03464.10 gi|433592291|ref|YP_007281787.1| - 0.012 15.9 0.0 0.02 15.1 0.0 1.4 1 0 0 1 1 1 0 eRF1 domain 2 IncA PF04156.9 gi|433592291|ref|YP_007281787.1| - 0.016 14.8 5.0 0.027 14.0 3.4 1.3 1 0 0 1 1 1 0 IncA protein HR1 PF02185.11 gi|433592291|ref|YP_007281787.1| - 0.021 14.5 4.8 0.041 13.6 2.1 2.1 1 1 1 2 2 2 0 Hr1 repeat YlqD PF11068.3 gi|433592291|ref|YP_007281787.1| - 0.022 14.8 2.6 0.036 14.1 1.8 1.3 1 0 0 1 1 1 0 YlqD protein ATG16 PF08614.6 gi|433592291|ref|YP_007281787.1| - 0.038 13.8 7.0 0.066 13.0 4.9 1.3 1 0 0 1 1 1 0 Autophagy protein 16 (ATG16) Syntaxin PF00804.20 gi|433592291|ref|YP_007281787.1| - 0.054 13.6 1.5 0.092 12.9 1.0 1.3 1 0 0 1 1 1 0 Syntaxin ADIP PF11559.3 gi|433592291|ref|YP_007281787.1| - 0.068 13.0 5.7 0.11 12.3 3.9 1.3 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding Leu_zip PF15294.1 gi|433592291|ref|YP_007281787.1| - 0.07 12.2 1.8 0.1 11.6 1.3 1.2 1 0 0 1 1 1 0 Leucine zipper DUF1192 PF06698.6 gi|433592291|ref|YP_007281787.1| - 0.071 12.9 18.1 0.81 9.5 4.7 3.8 5 0 0 5 5 4 0 Protein of unknown function (DUF1192) Fmp27_WPPW PF10359.4 gi|433592291|ref|YP_007281787.1| - 0.093 11.1 4.1 0.13 10.6 2.8 1.1 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain FlxA PF14282.1 gi|433592291|ref|YP_007281787.1| - 0.12 12.3 0.7 0.19 11.6 0.5 1.2 1 0 0 1 1 1 0 FlxA-like protein bZIP_1 PF00170.16 gi|433592291|ref|YP_007281787.1| - 0.16 11.9 8.7 1.5 8.7 1.0 2.5 1 1 1 2 2 2 0 bZIP transcription factor Tropomyosin PF00261.15 gi|433592291|ref|YP_007281787.1| - 0.22 10.5 12.9 0.23 10.5 8.1 1.5 1 1 0 1 1 1 0 Tropomyosin Ax_dynein_light PF10211.4 gi|433592291|ref|YP_007281787.1| - 0.23 11.3 5.1 0.35 10.6 3.5 1.2 1 0 0 1 1 1 0 Axonemal dynein light chain Prefoldin PF02996.12 gi|433592291|ref|YP_007281787.1| - 0.25 10.9 3.2 25 4.5 0.3 3.2 1 1 1 3 3 3 0 Prefoldin subunit HOOK PF05622.7 gi|433592291|ref|YP_007281787.1| - 0.27 9.0 5.2 0.32 8.7 3.6 1.1 1 0 0 1 1 1 0 HOOK protein Cep57_MT_bd PF06657.8 gi|433592291|ref|YP_007281787.1| - 0.31 11.0 5.6 6.8 6.7 3.2 2.3 1 1 1 2 2 2 0 Centrosome microtubule-binding domain of Cep57 DUF342 PF03961.8 gi|433592291|ref|YP_007281787.1| - 0.32 9.3 1.1 0.45 8.8 0.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF342) TMF_DNA_bd PF12329.3 gi|433592291|ref|YP_007281787.1| - 0.56 10.0 7.8 5.1 6.9 1.0 2.3 2 0 0 2 2 2 0 TATA element modulatory factor 1 DNA binding PDDEXK_1 PF12705.2 gi|433592291|ref|YP_007281787.1| - 0.57 9.5 4.0 1.9 7.8 2.8 1.7 2 0 0 2 2 2 0 PD-(D/E)XK nuclease superfamily CENP-F_leu_zip PF10473.4 gi|433592291|ref|YP_007281787.1| - 0.6 9.9 9.0 2.6 7.8 6.4 1.7 1 1 1 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 APG6 PF04111.7 gi|433592291|ref|YP_007281787.1| - 0.95 8.4 3.3 1.3 8.0 2.3 1.1 1 0 0 1 1 1 0 Autophagy protein Apg6 DUF4140 PF13600.1 gi|433592291|ref|YP_007281787.1| - 1.3 9.5 12.5 10 6.6 3.3 2.7 1 1 1 2 2 2 0 N-terminal domain of unknown function (DUF4140) Prefoldin_2 PF01920.15 gi|433592291|ref|YP_007281787.1| - 1.3 8.8 6.7 5.4 6.8 0.4 2.4 1 1 1 2 2 2 0 Prefoldin subunit DUF1266 PF06889.6 gi|433592291|ref|YP_007281787.1| - 1.4 8.7 6.5 0.77 9.5 3.0 1.6 2 0 0 2 2 1 0 Protein of unknown function (DUF1266) Paralemmin PF03285.10 gi|433592291|ref|YP_007281787.1| - 2.3 7.6 5.6 0.35 10.2 0.4 1.9 1 1 1 2 2 2 0 Paralemmin DUF904 PF06005.7 gi|433592291|ref|YP_007281787.1| - 2.4 8.5 9.4 83 3.5 6.5 2.7 1 1 0 1 1 1 0 Protein of unknown function (DUF904) NYD-SP28_assoc PF14775.1 gi|433592291|ref|YP_007281787.1| - 2.9 7.6 6.8 0.11 12.1 0.6 1.7 2 0 0 2 2 1 0 Sperm tail C-terminal domain DUF883 PF05957.8 gi|433592291|ref|YP_007281787.1| - 3.8 7.9 10.2 9.4 6.7 4.6 2.5 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF883) DUF1515 PF07439.6 gi|433592291|ref|YP_007281787.1| - 4.2 7.2 6.7 2.2 8.1 2.5 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1515) DivIC PF04977.10 gi|433592291|ref|YP_007281787.1| - 8.5 5.9 10.7 17 5.0 2.4 2.3 1 1 1 2 2 2 0 Septum formation initiator DUF1111 PF06537.6 gi|433592292|ref|YP_007281788.1| - 0.11 10.8 0.3 0.12 10.6 0.2 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1111) zf-FCS PF06467.9 gi|433592293|ref|YP_007281789.1| - 6e-05 22.5 0.5 0.00011 21.7 0.3 1.4 1 1 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif DUF329 PF03884.9 gi|433592293|ref|YP_007281789.1| - 0.022 14.3 1.0 0.023 14.2 0.7 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF329) MFS_1 PF07690.11 gi|433592294|ref|YP_007281790.1| - 4.5e-20 71.6 65.8 1e-14 54.0 30.2 2.2 1 1 1 2 2 2 2 Major Facilitator Superfamily DUF1611 PF07755.6 gi|433592295|ref|YP_007281791.1| - 1.7e-108 361.8 0.1 2e-108 361.5 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1611) CbiA PF01656.18 gi|433592295|ref|YP_007281791.1| - 0.018 14.4 0.1 0.054 12.8 0.1 1.7 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain MR_MLE_C PF13378.1 gi|433592296|ref|YP_007281792.1| - 1.6e-20 73.1 0.1 8.9e-20 70.7 0.1 2.1 3 0 0 3 3 3 1 Enolase C-terminal domain-like MR_MLE PF01188.16 gi|433592296|ref|YP_007281792.1| - 1e-15 57.9 2.7 1.7e-15 57.2 0.7 2.2 2 0 0 2 2 2 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain MR_MLE_N PF02746.11 gi|433592296|ref|YP_007281792.1| - 3.1e-14 52.9 0.0 5.3e-14 52.2 0.0 1.3 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain MAAL_C PF07476.6 gi|433592296|ref|YP_007281792.1| - 0.00027 19.9 0.0 0.00051 19.0 0.0 1.4 1 0 0 1 1 1 1 Methylaspartate ammonia-lyase C-terminus TAT_signal PF10518.4 gi|433592297|ref|YP_007281793.1| - 0.0011 18.7 3.1 0.0026 17.6 2.1 1.6 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence AAA_33 PF13671.1 gi|433592298|ref|YP_007281794.1| - 4.5e-11 42.8 0.6 2.3e-10 40.4 0.4 2.0 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|433592298|ref|YP_007281794.1| - 4.3e-08 33.5 0.0 0.00051 20.3 0.0 2.3 1 1 0 2 2 2 2 AAA domain AAA_17 PF13207.1 gi|433592298|ref|YP_007281794.1| - 5.1e-08 33.7 0.0 9.3e-08 32.9 0.0 1.6 1 1 0 1 1 1 1 AAA domain KTI12 PF08433.5 gi|433592298|ref|YP_007281794.1| - 7.3e-08 31.9 0.0 2.8e-05 23.4 0.0 2.0 2 0 0 2 2 2 2 Chromatin associated protein KTI12 AAA_16 PF13191.1 gi|433592298|ref|YP_007281794.1| - 6.7e-07 29.4 0.0 9.5e-07 28.9 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|433592298|ref|YP_007281794.1| - 2.2e-05 24.6 0.0 2.9e-05 24.2 0.0 1.3 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|433592298|ref|YP_007281794.1| - 7.2e-05 22.4 0.3 7.2e-05 22.4 0.2 1.8 2 1 0 2 2 1 1 Part of AAA domain Zeta_toxin PF06414.7 gi|433592298|ref|YP_007281794.1| - 0.0003 19.9 0.0 0.00045 19.3 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin NTPase_1 PF03266.10 gi|433592298|ref|YP_007281794.1| - 0.00088 19.0 0.0 0.0012 18.5 0.0 1.4 1 0 0 1 1 1 1 NTPase SRP54 PF00448.17 gi|433592298|ref|YP_007281794.1| - 0.00099 18.5 0.0 0.0012 18.3 0.0 1.1 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain MobB PF03205.9 gi|433592298|ref|YP_007281794.1| - 0.0012 18.5 0.0 0.0044 16.7 0.0 1.9 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B CPT PF07931.7 gi|433592298|ref|YP_007281794.1| - 0.0014 18.2 0.5 0.021 14.4 0.1 2.0 1 1 1 2 2 2 1 Chloramphenicol phosphotransferase-like protein AAA_28 PF13521.1 gi|433592298|ref|YP_007281794.1| - 0.0028 17.6 0.2 0.01 15.8 0.0 1.9 1 1 1 2 2 2 1 AAA domain PRK PF00485.13 gi|433592298|ref|YP_007281794.1| - 0.0062 16.1 0.0 0.0086 15.6 0.0 1.2 1 0 0 1 1 1 1 Phosphoribulokinase / Uridine kinase family APS_kinase PF01583.15 gi|433592298|ref|YP_007281794.1| - 0.0068 16.0 0.0 0.014 15.0 0.0 1.5 1 0 0 1 1 1 1 Adenylylsulphate kinase AAA_30 PF13604.1 gi|433592298|ref|YP_007281794.1| - 0.009 15.6 0.0 0.013 15.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_5 PF07728.9 gi|433592298|ref|YP_007281794.1| - 0.013 15.2 0.0 0.016 14.8 0.0 1.4 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) ArgK PF03308.11 gi|433592298|ref|YP_007281794.1| - 0.013 14.3 0.0 0.015 14.0 0.0 1.1 1 0 0 1 1 1 0 ArgK protein RNA_helicase PF00910.17 gi|433592298|ref|YP_007281794.1| - 0.018 15.1 0.0 0.026 14.6 0.0 1.3 1 0 0 1 1 1 0 RNA helicase ATP_bind_1 PF03029.12 gi|433592298|ref|YP_007281794.1| - 0.022 14.3 0.0 0.04 13.4 0.0 1.4 1 1 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_10 PF12846.2 gi|433592298|ref|YP_007281794.1| - 0.023 14.1 0.0 0.024 14.0 0.0 1.2 1 0 0 1 1 1 0 AAA-like domain PPK2 PF03976.9 gi|433592298|ref|YP_007281794.1| - 0.028 13.7 0.0 0.033 13.4 0.0 1.1 1 0 0 1 1 1 0 Polyphosphate kinase 2 (PPK2) ABC_tran PF00005.22 gi|433592298|ref|YP_007281794.1| - 0.032 14.5 0.0 0.032 14.5 0.0 1.2 1 0 0 1 1 1 0 ABC transporter DUF258 PF03193.11 gi|433592298|ref|YP_007281794.1| - 0.037 13.2 0.0 0.049 12.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA PF00004.24 gi|433592298|ref|YP_007281794.1| - 0.057 13.6 0.0 0.091 12.9 0.0 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) MMR_HSR1 PF01926.18 gi|433592298|ref|YP_007281794.1| - 0.087 12.7 0.0 0.099 12.6 0.0 1.2 1 0 0 1 1 1 0 50S ribosome-binding GTPase Thymidylate_kin PF02223.12 gi|433592298|ref|YP_007281794.1| - 0.1 11.9 0.0 0.18 11.1 0.0 1.5 1 0 0 1 1 1 0 Thymidylate kinase AAA_14 PF13173.1 gi|433592298|ref|YP_007281794.1| - 0.15 11.9 0.0 0.16 11.8 0.0 1.3 1 1 0 1 1 1 0 AAA domain DUF4013 PF13197.1 gi|433592299|ref|YP_007281795.1| - 0.22 10.8 13.6 0.12 11.7 0.5 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF4013) E1-E2_ATPase PF00122.15 gi|433592299|ref|YP_007281795.1| - 3.4 6.6 6.4 0.88 8.5 0.9 2.0 2 0 0 2 2 2 0 E1-E2 ATPase TAT_signal PF10518.4 gi|433592300|ref|YP_007281796.1| - 0.72 10.0 6.7 1.5 8.9 4.6 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence PspA_IM30 PF04012.7 gi|433592302|ref|YP_007281798.1| - 6.2e-33 114.0 32.7 6.2e-33 114.0 22.7 1.7 1 1 1 2 2 2 1 PspA/IM30 family Snf7 PF03357.16 gi|433592302|ref|YP_007281798.1| - 0.00017 21.0 16.8 0.00017 21.0 11.7 3.6 1 1 2 3 3 3 2 Snf7 ERM PF00769.14 gi|433592302|ref|YP_007281798.1| - 0.014 14.9 40.8 0.0037 16.8 26.2 1.5 1 1 0 1 1 1 0 Ezrin/radixin/moesin family STAT_alpha PF01017.15 gi|433592302|ref|YP_007281798.1| - 0.02 14.6 17.7 0.085 12.5 0.5 3.0 2 1 1 3 3 3 0 STAT protein, all-alpha domain DUF948 PF06103.6 gi|433592302|ref|YP_007281798.1| - 0.24 11.2 10.9 4.9 7.0 2.3 3.5 2 1 1 3 3 3 0 Bacterial protein of unknown function (DUF948) DUF972 PF06156.8 gi|433592302|ref|YP_007281798.1| - 0.32 11.3 27.6 0.76 10.1 3.9 3.5 1 1 1 2 2 2 0 Protein of unknown function (DUF972) Spc7 PF08317.6 gi|433592302|ref|YP_007281798.1| - 0.84 8.2 29.7 0.013 14.1 14.4 2.1 1 1 2 3 3 3 0 Spc7 kinetochore protein Not3 PF04065.10 gi|433592302|ref|YP_007281798.1| - 1.4 8.1 27.9 0.7 9.1 7.8 2.3 1 1 1 2 2 2 0 Not1 N-terminal domain, CCR4-Not complex component SPAM PF02090.10 gi|433592302|ref|YP_007281798.1| - 1.9 8.4 16.6 6.2 6.7 4.8 2.8 1 1 1 2 2 2 0 Salmonella surface presentation of antigen gene type M protein DUF3584 PF12128.3 gi|433592302|ref|YP_007281798.1| - 2.2 5.5 41.3 0.35 8.1 20.5 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3584) Dor1 PF04124.7 gi|433592302|ref|YP_007281798.1| - 2.3 6.5 16.6 0.65 8.3 6.0 2.2 1 1 1 2 2 2 0 Dor1-like family WXG100 PF06013.7 gi|433592302|ref|YP_007281798.1| - 2.6 8.0 21.0 1 9.4 4.9 3.8 1 1 1 3 3 3 0 Proteins of 100 residues with WXG Baculo_PEP_C PF04513.7 gi|433592302|ref|YP_007281798.1| - 2.7 7.7 13.7 11 5.7 3.3 3.4 1 1 2 3 3 3 0 Baculovirus polyhedron envelope protein, PEP, C terminus Syntaxin-6_N PF09177.6 gi|433592302|ref|YP_007281798.1| - 3.3 8.1 22.8 1 9.8 1.3 4.2 1 1 3 4 4 4 0 Syntaxin 6, N-terminal TPR_4 PF07721.9 gi|433592302|ref|YP_007281798.1| - 3.5 8.3 6.9 1.4 9.5 0.8 3.0 2 1 1 3 3 3 0 Tetratricopeptide repeat CENP-F_leu_zip PF10473.4 gi|433592302|ref|YP_007281798.1| - 3.7 7.3 42.1 61 3.4 6.2 3.4 1 1 1 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 V_ATPase_I PF01496.14 gi|433592302|ref|YP_007281798.1| - 4.7 4.9 25.2 0.71 7.6 13.2 2.3 1 1 2 3 3 3 0 V-type ATPase 116kDa subunit family DUF3138 PF11336.3 gi|433592302|ref|YP_007281798.1| - 4.9 5.1 5.2 4.5 5.3 2.8 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF3138) DUF2217 PF10265.4 gi|433592302|ref|YP_007281798.1| - 9.6 4.8 18.7 4.6 5.9 11.5 1.5 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2217) Bestrophin PF01062.16 gi|433592302|ref|YP_007281798.1| - 10 4.9 6.1 22 3.8 4.2 1.6 1 1 0 1 1 1 0 Bestrophin, RFP-TM, chloride channel Abhydrolase_5 PF12695.2 gi|433592303|ref|YP_007281799.1| - 5.6e-16 58.6 0.1 7.8e-16 58.1 0.1 1.3 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_6 PF12697.2 gi|433592303|ref|YP_007281799.1| - 7.7e-08 32.4 7.5 0.00061 19.7 2.7 2.2 1 1 1 2 2 2 2 Alpha/beta hydrolase family DLH PF01738.13 gi|433592303|ref|YP_007281799.1| - 9.9e-07 28.2 0.0 1.9e-06 27.3 0.0 1.3 1 1 0 1 1 1 1 Dienelactone hydrolase family Abhydrolase_1 PF00561.15 gi|433592303|ref|YP_007281799.1| - 7.7e-05 22.3 0.0 0.031 13.8 0.0 2.1 1 1 1 2 2 2 2 alpha/beta hydrolase fold Peptidase_S15 PF02129.13 gi|433592303|ref|YP_007281799.1| - 0.00016 21.1 0.0 0.00021 20.8 0.0 1.1 1 0 0 1 1 1 1 X-Pro dipeptidyl-peptidase (S15 family) Thioesterase PF00975.15 gi|433592303|ref|YP_007281799.1| - 0.00033 20.9 0.9 0.064 13.4 0.1 2.3 1 1 1 2 2 2 2 Thioesterase domain Abhydrolase_3 PF07859.8 gi|433592303|ref|YP_007281799.1| - 0.0013 18.2 0.2 0.0087 15.6 0.1 2.0 1 1 1 2 2 2 1 alpha/beta hydrolase fold Lipase_3 PF01764.20 gi|433592303|ref|YP_007281799.1| - 0.003 17.1 0.0 0.0038 16.8 0.0 1.3 1 0 0 1 1 1 1 Lipase (class 3) Peripla_BP_3 PF13377.1 gi|433592303|ref|YP_007281799.1| - 0.0045 17.0 1.0 0.01 15.8 0.7 1.8 1 1 0 1 1 1 1 Periplasmic binding protein-like domain VirJ PF06057.6 gi|433592303|ref|YP_007281799.1| - 0.0067 16.2 0.0 0.44 10.2 0.0 2.2 1 1 1 2 2 2 1 Bacterial virulence protein (VirJ) DUF2048 PF09752.4 gi|433592303|ref|YP_007281799.1| - 0.053 12.3 0.0 0.1 11.4 0.0 1.4 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2048) BAAT_C PF08840.6 gi|433592303|ref|YP_007281799.1| - 0.18 11.4 0.0 0.25 11.0 0.0 1.2 1 0 0 1 1 1 0 BAAT / Acyl-CoA thioester hydrolase C terminal DUF350 PF03994.9 gi|433592304|ref|YP_007281800.1| - 2.5 7.9 6.9 2.3 8.0 0.7 2.1 2 0 0 2 2 2 0 Domain of Unknown Function (DUF350) AAA_10 PF12846.2 gi|433592305|ref|YP_007281801.1| - 1.1e-19 71.0 0.1 2.1e-18 66.7 0.1 2.0 1 1 0 1 1 1 1 AAA-like domain DUF87 PF01935.12 gi|433592305|ref|YP_007281801.1| - 8.9e-09 35.4 0.0 1.7e-08 34.5 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function DUF87 DUF853 PF05872.7 gi|433592305|ref|YP_007281801.1| - 2.3e-06 26.2 0.3 0.0036 15.7 0.0 2.3 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) FtsK_SpoIIIE PF01580.13 gi|433592305|ref|YP_007281801.1| - 8.9e-05 22.0 0.1 0.0084 15.6 0.0 2.5 2 1 0 2 2 2 1 FtsK/SpoIIIE family Zot PF05707.7 gi|433592305|ref|YP_007281801.1| - 0.0022 17.4 0.0 0.16 11.3 0.0 2.3 2 0 0 2 2 2 1 Zonular occludens toxin (Zot) HAS-barrel PF09378.5 gi|433592305|ref|YP_007281801.1| - 0.0027 17.5 0.0 0.021 14.7 0.0 2.3 2 0 0 2 2 2 1 HAS barrel domain TrwB_AAD_bind PF10412.4 gi|433592305|ref|YP_007281801.1| - 0.011 14.3 0.0 0.019 13.6 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain T2SE PF00437.15 gi|433592305|ref|YP_007281801.1| - 0.021 13.7 0.0 0.045 12.6 0.0 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_22 PF13401.1 gi|433592305|ref|YP_007281801.1| - 0.048 13.8 0.0 0.23 11.6 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.1 gi|433592305|ref|YP_007281801.1| - 0.049 13.3 0.0 0.16 11.7 0.0 1.8 1 0 0 1 1 1 0 Part of AAA domain Cohesin PF00963.13 gi|433592306|ref|YP_007281802.1| - 3e-07 30.3 0.0 5e-07 29.6 0.0 1.3 1 0 0 1 1 1 1 Cohesin domain HTH_20 PF12840.2 gi|433592307|ref|YP_007281803.1| - 1.8e-06 27.6 9.5 0.00062 19.5 0.1 2.6 2 1 0 2 2 2 2 Helix-turn-helix domain Dimerisation PF08100.6 gi|433592307|ref|YP_007281803.1| - 0.056 13.2 0.0 1 9.2 0.0 2.4 2 0 0 2 2 2 0 Dimerisation domain HTH_5 PF01022.15 gi|433592307|ref|YP_007281803.1| - 0.12 12.1 0.1 0.71 9.5 0.0 2.3 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family HEAT_2 PF13646.1 gi|433592307|ref|YP_007281803.1| - 0.18 12.1 1.7 3.2 8.1 0.2 2.4 2 0 0 2 2 2 0 HEAT repeats HTH_IclR PF09339.5 gi|433592307|ref|YP_007281803.1| - 0.5 9.9 6.8 2.1 8.0 0.5 2.8 3 0 0 3 3 3 0 IclR helix-turn-helix domain NurA PF09376.5 gi|433592309|ref|YP_007281805.1| - 4.6e-26 91.8 0.0 6.2e-26 91.3 0.0 1.1 1 0 0 1 1 1 1 NurA domain zf-C2H2 PF00096.21 gi|433592310|ref|YP_007281806.1| - 0.0084 16.4 0.6 3.2 8.2 0.1 2.2 2 0 0 2 2 2 1 Zinc finger, C2H2 type zf-CGNR PF11706.3 gi|433592310|ref|YP_007281806.1| - 0.014 14.8 0.3 0.02 14.4 0.2 1.2 1 0 0 1 1 1 0 CGNR zinc finger TF_Zn_Ribbon PF08271.7 gi|433592310|ref|YP_007281806.1| - 0.02 14.1 5.5 0.38 10.1 0.0 2.3 1 1 1 2 2 2 0 TFIIB zinc-binding A2L_zn_ribbon PF08792.5 gi|433592310|ref|YP_007281806.1| - 0.024 14.0 2.1 1.8 8.1 0.1 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain Lar_restr_allev PF14354.1 gi|433592310|ref|YP_007281806.1| - 0.034 14.4 1.8 1.1 9.6 0.0 2.2 1 1 1 2 2 2 0 Restriction alleviation protein Lar DUF2296 PF10058.4 gi|433592310|ref|YP_007281806.1| - 0.061 13.0 0.3 0.15 11.8 0.2 1.7 1 1 0 1 1 1 0 Predicted integral membrane metal-binding protein (DUF2296) zf-C2H2_6 PF13912.1 gi|433592310|ref|YP_007281806.1| - 0.064 13.1 1.8 3.7 7.5 0.1 2.3 2 0 0 2 2 2 0 C2H2-type zinc finger GATA PF00320.22 gi|433592310|ref|YP_007281806.1| - 0.08 12.3 2.2 1.8 7.9 0.7 2.8 2 1 1 3 3 3 0 GATA zinc finger UPF0547 PF10571.4 gi|433592310|ref|YP_007281806.1| - 0.087 12.5 1.6 1.9 8.2 0.0 2.1 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 DZR PF12773.2 gi|433592310|ref|YP_007281806.1| - 0.092 12.5 1.3 0.22 11.3 0.9 1.6 1 1 0 1 1 1 0 Double zinc ribbon ADK_lid PF05191.9 gi|433592310|ref|YP_007281806.1| - 0.097 12.3 3.6 0.59 9.8 2.5 2.0 1 1 0 1 1 1 0 Adenylate kinase, active site lid Nudix_N_2 PF14803.1 gi|433592310|ref|YP_007281806.1| - 0.12 12.0 1.3 5.8 6.6 0.0 2.4 2 0 0 2 2 2 0 Nudix N-terminal Zn-ribbon_8 PF09723.5 gi|433592310|ref|YP_007281806.1| - 0.13 12.2 1.3 0.26 11.2 0.9 1.5 1 1 0 1 1 1 0 Zinc ribbon domain DUF35_N PF12172.3 gi|433592310|ref|YP_007281806.1| - 0.14 12.1 3.0 3.4 7.6 0.4 2.4 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) OrfB_Zn_ribbon PF07282.6 gi|433592310|ref|YP_007281806.1| - 0.18 11.4 0.7 0.29 10.8 0.5 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain RRN7 PF11781.3 gi|433592310|ref|YP_007281806.1| - 0.19 11.2 1.5 1.7 8.1 0.1 2.2 2 0 0 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 Prok-RING_1 PF14446.1 gi|433592310|ref|YP_007281806.1| - 0.2 11.4 2.7 0.76 9.5 1.9 1.8 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 XPA_N PF01286.13 gi|433592310|ref|YP_007281806.1| - 0.35 10.5 2.1 9.7 5.9 0.2 2.4 2 0 0 2 2 2 0 XPA protein N-terminal zf-ribbon_3 PF13248.1 gi|433592310|ref|YP_007281806.1| - 0.54 9.5 3.8 1.4 8.2 2.6 1.7 1 1 0 1 1 1 0 zinc-ribbon domain iPGM_N PF06415.8 gi|433592311|ref|YP_007281807.1| - 5.7e-76 254.7 0.1 7.6e-76 254.3 0.1 1.2 1 0 0 1 1 1 1 BPG-independent PGAM N-terminus (iPGM_N) Metalloenzyme PF01676.13 gi|433592311|ref|YP_007281807.1| - 2.4e-72 243.3 0.0 3e-72 243.0 0.0 1.1 1 0 0 1 1 1 1 Metalloenzyme superfamily Phosphodiest PF01663.17 gi|433592311|ref|YP_007281807.1| - 2.4e-10 40.3 0.7 7e-10 38.7 0.2 1.9 2 1 0 2 2 2 1 Type I phosphodiesterase / nucleotide pyrophosphatase PglZ PF08665.7 gi|433592311|ref|YP_007281807.1| - 0.00027 20.6 0.1 0.00069 19.3 0.1 1.6 1 0 0 1 1 1 1 PglZ domain Sulfatase PF00884.18 gi|433592311|ref|YP_007281807.1| - 0.00028 20.1 0.1 0.00085 18.6 0.0 2.0 2 1 0 2 2 2 1 Sulfatase HATPase_c PF02518.21 gi|433592312|ref|YP_007281808.1| - 3.4e-14 52.5 0.0 7.1e-14 51.4 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.5 gi|433592312|ref|YP_007281808.1| - 1.3e-10 41.2 1.6 1.1e-09 38.3 0.3 3.0 2 1 0 2 2 2 1 PAS fold PAS PF00989.19 gi|433592312|ref|YP_007281808.1| - 2.7e-08 33.5 0.1 5e-06 26.2 0.1 2.4 1 1 0 1 1 1 1 PAS fold PAS_9 PF13426.1 gi|433592312|ref|YP_007281808.1| - 3.2e-08 33.8 0.0 7.5e-06 26.2 0.0 2.9 2 1 0 2 2 2 1 PAS domain PAS_8 PF13188.1 gi|433592312|ref|YP_007281808.1| - 1.4e-05 24.7 0.0 3.8e-05 23.3 0.0 1.7 1 0 0 1 1 1 1 PAS domain HisKA PF00512.20 gi|433592312|ref|YP_007281808.1| - 5.9e-05 22.9 0.2 0.00012 22.0 0.1 1.5 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c_2 PF13581.1 gi|433592312|ref|YP_007281808.1| - 7.7e-05 22.4 0.1 0.00019 21.1 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain DUF3186 PF11382.3 gi|433592312|ref|YP_007281808.1| - 0.014 14.5 2.4 0.043 12.9 1.3 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF3186) HATPase_c_3 PF13589.1 gi|433592312|ref|YP_007281808.1| - 0.07 12.7 0.0 0.13 11.9 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_10 PF13596.1 gi|433592312|ref|YP_007281808.1| - 0.08 13.2 0.0 0.27 11.5 0.0 1.8 1 1 0 1 1 1 0 PAS domain Na_Ca_ex PF01699.19 gi|433592315|ref|YP_007281811.1| - 5.7e-38 129.6 25.9 2.8e-19 69.1 7.5 2.1 2 0 0 2 2 2 2 Sodium/calcium exchanger protein Cys_Met_Meta_PP PF01053.15 gi|433592316|ref|YP_007281812.1| - 3.3e-140 466.7 0.0 3.8e-140 466.5 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_1_2 PF00155.16 gi|433592316|ref|YP_007281812.1| - 1.3e-07 30.9 0.0 1.8e-07 30.4 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|433592316|ref|YP_007281812.1| - 2e-06 27.0 1.4 1.7e-05 24.0 0.4 2.1 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.16 gi|433592316|ref|YP_007281812.1| - 0.0011 18.1 0.0 0.0016 17.6 0.0 1.4 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.14 gi|433592316|ref|YP_007281812.1| - 0.0033 16.2 0.1 0.006 15.3 0.0 1.5 2 0 0 2 2 2 1 Aminotransferase class-V SLA_LP_auto_ag PF05889.8 gi|433592316|ref|YP_007281812.1| - 0.0072 14.8 0.0 0.012 14.1 0.0 1.3 1 0 0 1 1 1 1 Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) Robl_LC7 PF03259.12 gi|433592317|ref|YP_007281813.1| - 0.12 11.8 0.1 0.82 9.2 0.0 2.0 2 0 0 2 2 2 0 Roadblock/LC7 domain HTH_29 PF13551.1 gi|433592320|ref|YP_007281816.1| - 3.2e-14 53.0 0.0 2.5e-13 50.1 0.0 2.4 2 1 1 3 3 3 1 Winged helix-turn helix DDE_3 PF13358.1 gi|433592320|ref|YP_007281816.1| - 1.6e-12 47.4 0.1 3.7e-12 46.2 0.0 1.6 2 0 0 2 2 2 1 DDE superfamily endonuclease HTH_32 PF13565.1 gi|433592320|ref|YP_007281816.1| - 1.9e-11 44.6 0.6 2.7e-10 40.8 0.0 2.6 2 0 0 2 2 2 1 Homeodomain-like domain HTH_23 PF13384.1 gi|433592320|ref|YP_007281816.1| - 9.7e-09 34.6 0.0 3.5e-08 32.8 0.0 2.0 2 0 0 2 2 2 1 Homeodomain-like domain HTH_33 PF13592.1 gi|433592320|ref|YP_007281816.1| - 2.9e-08 33.1 0.0 8.3e-07 28.4 0.0 2.4 2 0 0 2 2 2 1 Winged helix-turn helix HTH_28 PF13518.1 gi|433592320|ref|YP_007281816.1| - 6.6e-06 26.0 0.0 1.7e-05 24.7 0.0 1.7 2 0 0 2 2 1 1 Helix-turn-helix domain rve PF00665.21 gi|433592320|ref|YP_007281816.1| - 6.8e-05 22.9 0.0 0.00013 22.0 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain DDE_1 PF03184.14 gi|433592320|ref|YP_007281816.1| - 0.0006 19.0 0.0 0.00098 18.3 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_7 PF02796.10 gi|433592320|ref|YP_007281816.1| - 0.0015 18.3 0.1 0.0034 17.2 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase Sigma70_r4 PF04545.11 gi|433592320|ref|YP_007281816.1| - 0.0035 16.6 0.0 0.011 14.9 0.0 1.9 1 0 0 1 1 1 1 Sigma-70, region 4 DUF746 PF05344.6 gi|433592320|ref|YP_007281816.1| - 0.0099 15.3 0.0 0.029 13.8 0.0 1.8 1 0 0 1 1 1 1 Domain of Unknown Function (DUF746) LZ_Tnp_IS481 PF13011.1 gi|433592320|ref|YP_007281816.1| - 0.041 14.2 0.0 0.09 13.1 0.0 1.5 1 0 0 1 1 1 0 leucine-zipper of insertion element IS481 Sigma70_r4_2 PF08281.7 gi|433592320|ref|YP_007281816.1| - 0.048 13.1 0.1 0.17 11.3 0.0 1.9 2 0 0 2 2 2 0 Sigma-70, region 4 AsnC_trans_reg PF01037.16 gi|433592321|ref|YP_007281817.1| - 5.7e-12 45.1 0.1 6.3e-12 45.0 0.1 1.0 1 0 0 1 1 1 1 AsnC family TrkA_N PF02254.13 gi|433592322|ref|YP_007281818.1| - 2.7e-23 82.1 0.1 4.3e-23 81.5 0.1 1.3 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.16 gi|433592322|ref|YP_007281818.1| - 2.7e-12 46.0 0.3 7.6e-12 44.6 0.1 1.9 2 0 0 2 2 2 1 TrkA-C domain NAD_binding_10 PF13460.1 gi|433592322|ref|YP_007281818.1| - 7.4e-06 26.0 1.0 1.2e-05 25.4 0.2 1.7 2 0 0 2 2 2 1 NADH(P)-binding Pyr_redox_2 PF07992.9 gi|433592322|ref|YP_007281818.1| - 4.7e-05 23.3 0.0 0.00051 19.9 0.0 2.1 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase ApbA PF02558.11 gi|433592322|ref|YP_007281818.1| - 0.00011 21.6 0.0 0.00021 20.7 0.0 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA DAO PF01266.19 gi|433592322|ref|YP_007281818.1| - 0.00018 20.5 0.0 0.00037 19.5 0.0 1.6 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox PF00070.22 gi|433592322|ref|YP_007281818.1| - 0.00024 21.4 0.0 0.00047 20.5 0.0 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_7 PF13241.1 gi|433592322|ref|YP_007281818.1| - 0.00025 21.2 0.0 0.00045 20.4 0.0 1.5 1 0 0 1 1 1 1 Putative NAD(P)-binding FAD_binding_3 PF01494.14 gi|433592322|ref|YP_007281818.1| - 0.00081 18.5 0.1 0.0011 18.1 0.1 1.3 1 0 0 1 1 1 1 FAD binding domain IlvN PF07991.7 gi|433592322|ref|YP_007281818.1| - 0.003 16.9 0.0 0.0051 16.2 0.0 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain 3HCDH_N PF02737.13 gi|433592322|ref|YP_007281818.1| - 0.0044 16.6 0.1 0.007 16.0 0.1 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.9 gi|433592322|ref|YP_007281818.1| - 0.0045 16.3 0.0 0.0075 15.6 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|433592322|ref|YP_007281818.1| - 0.005 16.0 0.0 0.026 13.6 0.0 1.9 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.16 gi|433592322|ref|YP_007281818.1| - 0.0066 16.0 0.0 0.01 15.4 0.0 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_8 PF13450.1 gi|433592322|ref|YP_007281818.1| - 0.0072 16.3 0.0 0.015 15.2 0.0 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain NAD_binding_2 PF03446.10 gi|433592322|ref|YP_007281818.1| - 0.014 15.2 0.1 0.071 12.9 0.0 2.0 2 0 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_Gly3P_dh_N PF01210.18 gi|433592322|ref|YP_007281818.1| - 0.021 14.5 0.0 0.035 13.8 0.0 1.3 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Saccharop_dh PF03435.13 gi|433592322|ref|YP_007281818.1| - 0.024 13.6 0.1 0.04 12.9 0.1 1.3 1 0 0 1 1 1 0 Saccharopine dehydrogenase XdhC_C PF13478.1 gi|433592322|ref|YP_007281818.1| - 0.041 14.1 0.1 0.074 13.3 0.0 1.4 1 0 0 1 1 1 0 XdhC Rossmann domain NmrA PF05368.8 gi|433592322|ref|YP_007281818.1| - 0.085 12.0 0.1 0.12 11.6 0.0 1.2 1 0 0 1 1 1 0 NmrA-like family GFO_IDH_MocA PF01408.17 gi|433592322|ref|YP_007281818.1| - 0.096 13.1 0.0 0.17 12.3 0.0 1.5 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold Glyco_trans_4_4 PF13579.1 gi|433592322|ref|YP_007281818.1| - 0.099 12.7 2.1 0.82 9.7 1.4 2.1 1 1 1 2 2 2 0 Glycosyl transferase 4-like domain F420_oxidored PF03807.12 gi|433592322|ref|YP_007281818.1| - 0.1 13.0 0.0 0.21 12.0 0.0 1.5 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent AsnC_trans_reg PF01037.16 gi|433592323|ref|YP_007281819.1| - 1.9e-11 43.5 0.1 2.1e-11 43.3 0.1 1.0 1 0 0 1 1 1 1 AsnC family Thymidylate_kin PF02223.12 gi|433592324|ref|YP_007281820.1| - 5.5e-38 130.2 0.0 9.5e-38 129.4 0.0 1.4 1 1 0 1 1 1 1 Thymidylate kinase AAA_33 PF13671.1 gi|433592324|ref|YP_007281820.1| - 1e-05 25.4 0.0 2.7e-05 24.0 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|433592324|ref|YP_007281820.1| - 4.3e-05 23.5 1.0 8e-05 22.6 0.7 1.5 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|433592324|ref|YP_007281820.1| - 7.4e-05 23.0 0.0 0.00055 20.2 0.0 2.3 1 1 0 1 1 1 1 AAA domain dNK PF01712.14 gi|433592324|ref|YP_007281820.1| - 0.0011 18.8 0.0 0.0016 18.3 0.0 1.2 1 0 0 1 1 1 1 Deoxynucleoside kinase AAA_17 PF13207.1 gi|433592324|ref|YP_007281820.1| - 0.0023 18.7 0.2 0.0069 17.1 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|433592324|ref|YP_007281820.1| - 0.024 14.7 0.0 0.13 12.4 0.0 2.0 2 0 0 2 2 2 0 AAA domain SKI PF01202.17 gi|433592324|ref|YP_007281820.1| - 0.08 12.8 0.1 0.53 10.1 0.0 2.1 2 0 0 2 2 2 0 Shikimate kinase AAA_16 PF13191.1 gi|433592324|ref|YP_007281820.1| - 0.095 12.6 0.1 0.23 11.4 0.1 1.8 1 1 0 1 1 1 0 AAA ATPase domain DUF3107 PF11305.3 gi|433592324|ref|YP_007281820.1| - 0.13 12.1 0.0 3.2 7.7 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3107) NAD_binding_10 PF13460.1 gi|433592325|ref|YP_007281821.1| - 6.1e-28 98.0 0.1 8.4e-28 97.6 0.1 1.2 1 0 0 1 1 1 1 NADH(P)-binding Epimerase PF01370.16 gi|433592325|ref|YP_007281821.1| - 2.5e-17 63.1 0.0 2.1e-16 60.0 0.0 2.2 2 1 0 2 2 2 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|433592325|ref|YP_007281821.1| - 7.2e-13 48.0 0.0 1.9e-05 23.7 0.0 2.4 2 1 0 2 2 2 2 RmlD substrate binding domain 3Beta_HSD PF01073.14 gi|433592325|ref|YP_007281821.1| - 1.8e-10 39.9 0.0 1.8e-09 36.6 0.0 2.0 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NmrA PF05368.8 gi|433592325|ref|YP_007281821.1| - 3.1e-10 39.7 0.0 4.4e-10 39.2 0.0 1.2 1 0 0 1 1 1 1 NmrA-like family NAD_binding_4 PF07993.7 gi|433592325|ref|YP_007281821.1| - 6.3e-07 28.5 0.1 0.0092 14.9 0.0 2.2 1 1 0 2 2 2 2 Male sterility protein adh_short PF00106.20 gi|433592325|ref|YP_007281821.1| - 0.0013 18.7 0.8 0.0026 17.7 0.6 1.5 1 1 0 1 1 1 1 short chain dehydrogenase Glyco_trans_4_4 PF13579.1 gi|433592325|ref|YP_007281821.1| - 0.0026 17.9 0.1 0.005 17.0 0.1 1.6 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Polysacc_synt_2 PF02719.10 gi|433592325|ref|YP_007281821.1| - 0.011 14.6 0.0 1.2 7.9 0.0 2.1 2 0 0 2 2 2 0 Polysaccharide biosynthesis protein KR PF08659.5 gi|433592325|ref|YP_007281821.1| - 0.013 15.1 0.1 0.15 11.7 0.1 2.1 2 0 0 2 2 2 0 KR domain UDPG_MGDP_dh_N PF03721.9 gi|433592325|ref|YP_007281821.1| - 0.016 14.5 0.0 0.028 13.8 0.0 1.4 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Saccharop_dh PF03435.13 gi|433592325|ref|YP_007281821.1| - 0.023 13.6 0.3 0.035 13.1 0.2 1.2 1 0 0 1 1 1 0 Saccharopine dehydrogenase F420_oxidored PF03807.12 gi|433592325|ref|YP_007281821.1| - 0.025 14.9 0.1 0.19 12.1 0.1 2.3 3 0 0 3 3 2 0 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.10 gi|433592325|ref|YP_007281821.1| - 0.036 13.9 0.0 0.08 12.7 0.0 1.6 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase Glyco_transf_4 PF13439.1 gi|433592325|ref|YP_007281821.1| - 0.059 13.0 0.0 0.11 12.2 0.0 1.4 1 0 0 1 1 1 0 Glycosyltransferase Family 4 Pyr_redox PF00070.22 gi|433592325|ref|YP_007281821.1| - 0.12 12.7 0.2 0.3 11.5 0.2 1.7 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Tubulin PF00091.20 gi|433592326|ref|YP_007281822.1| - 3.9e-25 88.9 0.1 8.8e-25 87.7 0.0 1.6 1 1 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain CofC PF01983.11 gi|433592327|ref|YP_007281823.1| - 1.6e-38 131.8 0.0 2e-38 131.5 0.0 1.0 1 0 0 1 1 1 1 Guanylyl transferase CofC like NTP_transf_3 PF12804.2 gi|433592327|ref|YP_007281823.1| - 9.1e-06 25.8 2.7 1.5e-05 25.1 1.9 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain Radical_SAM PF04055.16 gi|433592328|ref|YP_007281824.1| - 1.5e-12 48.0 0.0 6.2e-12 46.0 0.0 1.9 2 0 0 2 2 2 1 Radical SAM superfamily dCMP_cyt_deam_1 PF00383.17 gi|433592329|ref|YP_007281825.1| - 5.7e-16 58.0 0.0 7.7e-16 57.6 0.0 1.2 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region APOBEC_N PF08210.6 gi|433592329|ref|YP_007281825.1| - 0.0056 16.3 0.0 0.0072 15.9 0.0 1.1 1 0 0 1 1 1 1 APOBEC-like N-terminal domain Bd3614-deam PF14439.1 gi|433592329|ref|YP_007281825.1| - 0.0057 16.5 0.4 0.0089 15.8 0.3 1.4 1 1 0 1 1 1 1 Bd3614-like deaminase XOO_2897-deam PF14440.1 gi|433592329|ref|YP_007281825.1| - 0.036 13.7 0.0 0.047 13.3 0.0 1.2 1 0 0 1 1 1 0 Xanthomonas XOO_2897-like deaminase RecR PF02132.10 gi|433592329|ref|YP_007281825.1| - 0.16 11.4 0.3 0.33 10.4 0.2 1.5 1 0 0 1 1 1 0 RecR protein adh_short PF00106.20 gi|433592330|ref|YP_007281826.1| - 9.2e-36 123.2 5.8 1.3e-35 122.7 4.0 1.2 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|433592330|ref|YP_007281826.1| - 1.5e-29 103.4 0.1 1.8e-29 103.2 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|433592330|ref|YP_007281826.1| - 5.7e-15 55.4 3.4 8.3e-15 54.9 2.2 1.3 1 1 0 1 1 1 1 KR domain 3Beta_HSD PF01073.14 gi|433592330|ref|YP_007281826.1| - 3.1e-05 22.8 0.2 4.3e-05 22.3 0.2 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family 3HCDH_N PF02737.13 gi|433592330|ref|YP_007281826.1| - 0.0043 16.7 0.6 0.0081 15.8 0.4 1.5 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Epimerase PF01370.16 gi|433592330|ref|YP_007281826.1| - 0.012 15.0 0.7 0.012 15.0 0.5 1.6 2 1 0 2 2 2 0 NAD dependent epimerase/dehydratase family Methyltransf_18 PF12847.2 gi|433592330|ref|YP_007281826.1| - 0.022 15.3 0.5 0.037 14.6 0.3 1.4 1 0 0 1 1 1 0 Methyltransferase domain RmlD_sub_bind PF04321.12 gi|433592330|ref|YP_007281826.1| - 0.033 13.0 0.5 0.05 12.5 0.3 1.3 1 0 0 1 1 1 0 RmlD substrate binding domain THF_DHG_CYH_C PF02882.14 gi|433592330|ref|YP_007281826.1| - 0.035 13.1 0.0 0.2 10.6 0.0 2.2 2 0 0 2 2 2 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain NAD_binding_7 PF13241.1 gi|433592330|ref|YP_007281826.1| - 0.04 14.1 0.2 0.078 13.2 0.2 1.5 1 0 0 1 1 1 0 Putative NAD(P)-binding Shikimate_DH PF01488.15 gi|433592330|ref|YP_007281826.1| - 0.042 13.9 0.3 0.36 10.9 0.1 2.2 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase TrkA_N PF02254.13 gi|433592330|ref|YP_007281826.1| - 0.091 12.7 1.7 0.14 12.1 1.2 1.3 1 0 0 1 1 1 0 TrkA-N domain Cyclase PF04199.8 gi|433592331|ref|YP_007281827.1| - 5.1e-27 94.6 0.7 8.4e-27 93.9 0.5 1.3 1 0 0 1 1 1 1 Putative cyclase Radical_SAM PF04055.16 gi|433592333|ref|YP_007281829.1| - 7.5e-15 55.4 0.1 1.7e-14 54.3 0.0 1.6 1 0 0 1 1 1 1 Radical SAM superfamily SAICAR_synt PF01259.13 gi|433592334|ref|YP_007281830.1| - 7.6e-19 67.7 0.0 1.4e-18 66.9 0.0 1.3 1 1 0 1 1 1 1 SAICAR synthetase DUF2244 PF10003.4 gi|433592335|ref|YP_007281831.1| - 0.14 11.5 4.0 0.16 11.3 2.8 1.0 1 0 0 1 1 1 0 Integral membrane protein (DUF2244) Herpes_UL45 PF05473.7 gi|433592335|ref|YP_007281831.1| - 0.22 10.9 0.8 0.21 10.9 0.5 1.1 1 0 0 1 1 1 0 UL45 protein DUF4175 PF13779.1 gi|433592335|ref|YP_007281831.1| - 0.31 8.6 2.0 0.34 8.5 1.4 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4175) IncA PF04156.9 gi|433592335|ref|YP_007281831.1| - 0.84 9.2 3.2 0.86 9.1 2.2 1.1 1 0 0 1 1 1 0 IncA protein MFS_3 PF05977.8 gi|433592336|ref|YP_007281832.1| - 3.5e-21 74.9 23.3 4.9e-21 74.4 16.2 1.1 1 0 0 1 1 1 1 Transmembrane secretion effector MFS_1 PF07690.11 gi|433592336|ref|YP_007281832.1| - 1.6e-13 50.1 48.1 4.3e-11 42.1 25.7 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily ThiS PF02597.15 gi|433592337|ref|YP_007281833.1| - 3.8e-07 30.4 0.0 4.4e-07 30.2 0.0 1.1 1 0 0 1 1 1 1 ThiS family Lambda_tail_I PF06805.7 gi|433592337|ref|YP_007281833.1| - 0.0038 17.0 0.0 0.0046 16.7 0.0 1.1 1 0 0 1 1 1 1 Bacteriophage lambda tail assembly protein I FmdA_AmdA PF03069.10 gi|433592338|ref|YP_007281834.1| - 1.7e-51 175.0 1.7 1.1e-48 165.7 0.4 2.0 1 1 1 2 2 2 2 Acetamidase/Formamidase family UPF0547 PF10571.4 gi|433592338|ref|YP_007281834.1| - 0.008 15.8 4.8 0.082 12.6 3.3 2.2 1 1 0 1 1 1 1 Uncharacterised protein family UPF0547 DZR PF12773.2 gi|433592338|ref|YP_007281834.1| - 0.013 15.3 0.3 0.023 14.4 0.2 1.4 1 0 0 1 1 1 0 Double zinc ribbon DNA_ligase_ZBD PF03119.11 gi|433592338|ref|YP_007281834.1| - 0.078 12.6 1.6 8.2 6.2 0.6 2.8 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zinc_ribbon_2 PF13240.1 gi|433592338|ref|YP_007281834.1| - 0.15 11.6 1.6 2.9 7.5 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain Ribosomal_S27e PF01667.12 gi|433592338|ref|YP_007281834.1| - 0.15 11.5 0.0 0.31 10.6 0.0 1.4 1 0 0 1 1 1 0 Ribosomal protein S27 Zn-ribbon_8 PF09723.5 gi|433592338|ref|YP_007281834.1| - 0.27 11.2 1.3 1.3 9.0 1.2 2.0 2 1 0 2 2 2 0 Zinc ribbon domain DNA_RNApol_7kD PF03604.8 gi|433592338|ref|YP_007281834.1| - 0.34 10.4 3.3 1.9 8.0 2.3 2.1 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit zf-tcix PF14952.1 gi|433592338|ref|YP_007281834.1| - 0.36 10.1 2.6 10 5.5 0.1 2.2 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding Prok-RING_1 PF14446.1 gi|433592338|ref|YP_007281834.1| - 0.45 10.2 1.9 1.3 8.7 1.3 1.7 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 zf-ribbon_3 PF13248.1 gi|433592338|ref|YP_007281834.1| - 0.58 9.4 5.7 3.1 7.1 4.0 2.1 1 1 1 2 2 2 0 zinc-ribbon domain GFA PF04828.9 gi|433592339|ref|YP_007281835.1| - 0.02 14.8 1.8 1.5 8.7 0.1 2.1 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme DUF2116 PF09889.4 gi|433592339|ref|YP_007281835.1| - 0.02 14.6 1.7 0.12 12.1 0.1 2.1 2 0 0 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) DUF581 PF04570.9 gi|433592339|ref|YP_007281835.1| - 0.024 13.9 3.7 0.029 13.6 0.5 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF581) Nudix_N_2 PF14803.1 gi|433592339|ref|YP_007281835.1| - 0.064 12.9 2.1 1.6 8.5 1.4 2.1 1 1 0 1 1 1 0 Nudix N-terminal DUF3330 PF11809.3 gi|433592339|ref|YP_007281835.1| - 0.15 11.9 1.0 0.22 11.4 0.7 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF3330) zf-FCS PF06467.9 gi|433592339|ref|YP_007281835.1| - 0.2 11.3 1.1 0.39 10.3 0.8 1.6 1 1 0 1 1 1 0 MYM-type Zinc finger with FCS sequence motif DUF329 PF03884.9 gi|433592339|ref|YP_007281835.1| - 0.48 10.0 4.1 16 5.1 2.8 2.1 1 1 0 1 1 1 0 Domain of unknown function (DUF329) YHS PF04945.8 gi|433592339|ref|YP_007281835.1| - 1.6 8.6 4.2 1.3 8.9 1.0 2.0 2 1 0 2 2 2 0 YHS domain Formyl_trans_N PF00551.14 gi|433592340|ref|YP_007281836.1| - 2.1e-42 144.7 0.1 1e-41 142.4 0.0 1.9 2 0 0 2 2 2 1 Formyl transferase ACT_6 PF13740.1 gi|433592340|ref|YP_007281836.1| - 3e-09 36.4 0.3 1.1e-08 34.6 0.1 1.9 2 0 0 2 2 2 1 ACT domain ACT PF01842.20 gi|433592340|ref|YP_007281836.1| - 8.3e-06 25.1 2.0 1.3e-05 24.5 0.1 2.4 4 0 0 4 4 4 1 ACT domain ACT_4 PF13291.1 gi|433592340|ref|YP_007281836.1| - 0.00013 22.1 0.1 0.00034 20.8 0.1 1.6 1 0 0 1 1 1 1 ACT domain PurS PF02700.9 gi|433592342|ref|YP_007281838.1| - 3e-26 91.1 0.0 3.3e-26 91.0 0.0 1.0 1 0 0 1 1 1 1 Phosphoribosylformylglycinamidine (FGAM) synthase DUF2184 PF09950.4 gi|433592342|ref|YP_007281838.1| - 0.026 13.5 0.1 0.03 13.3 0.1 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2184) GATase_5 PF13507.1 gi|433592343|ref|YP_007281839.1| - 1e-40 139.3 0.0 1.3e-40 139.0 0.0 1.1 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.23 gi|433592343|ref|YP_007281839.1| - 1.8e-07 30.7 0.0 2.3e-07 30.4 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.9 gi|433592343|ref|YP_007281839.1| - 0.0002 20.9 0.0 0.00045 19.8 0.0 1.6 2 0 0 2 2 2 1 CobB/CobQ-like glutamine amidotransferase domain DJ-1_PfpI PF01965.19 gi|433592343|ref|YP_007281839.1| - 0.0015 18.0 0.1 0.0025 17.2 0.1 1.3 1 0 0 1 1 1 1 DJ-1/PfpI family DUF4066 PF13278.1 gi|433592343|ref|YP_007281839.1| - 0.0024 17.1 0.0 0.0033 16.7 0.0 1.2 1 0 0 1 1 1 1 Putative amidotransferase Peptidase_C26 PF07722.8 gi|433592343|ref|YP_007281839.1| - 0.05 13.0 0.0 0.063 12.7 0.0 1.3 1 0 0 1 1 1 0 Peptidase C26 PAS_9 PF13426.1 gi|433592344|ref|YP_007281840.1| - 1.9e-46 156.6 0.7 1.2e-16 60.9 0.1 3.7 3 0 0 3 3 3 3 PAS domain PAS_4 PF08448.5 gi|433592344|ref|YP_007281840.1| - 6.8e-40 135.5 6.8 1.1e-13 51.1 0.5 5.0 5 0 0 5 5 5 3 PAS fold PAS PF00989.19 gi|433592344|ref|YP_007281840.1| - 2.9e-38 130.1 0.2 9.5e-14 51.1 0.0 3.5 3 0 0 3 3 3 3 PAS fold PAS_8 PF13188.1 gi|433592344|ref|YP_007281840.1| - 2.6e-23 81.0 0.1 1e-08 34.6 0.0 3.9 3 0 0 3 3 3 3 PAS domain PAS_3 PF08447.6 gi|433592344|ref|YP_007281840.1| - 7.6e-18 64.4 0.0 4.6e-05 23.4 0.0 3.5 3 0 0 3 3 3 3 PAS fold GAF_2 PF13185.1 gi|433592344|ref|YP_007281840.1| - 1.6e-17 64.3 4.2 8.9e-09 36.0 0.2 3.4 2 1 1 3 3 3 2 GAF domain GAF_3 PF13492.1 gi|433592344|ref|YP_007281840.1| - 2.5e-15 56.7 0.5 7.9e-09 35.6 0.1 2.6 2 0 0 2 2 2 2 GAF domain HATPase_c PF02518.21 gi|433592344|ref|YP_007281840.1| - 3.2e-15 55.8 0.0 8.2e-15 54.4 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.1 gi|433592344|ref|YP_007281840.1| - 1.9e-09 37.3 0.1 5.5e-09 35.8 0.1 1.8 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain Response_reg PF00072.19 gi|433592344|ref|YP_007281840.1| - 3.7e-07 30.1 0.0 1.2e-06 28.5 0.0 1.9 1 0 0 1 1 1 1 Response regulator receiver domain HisKA PF00512.20 gi|433592344|ref|YP_007281840.1| - 5.8e-05 22.9 1.8 0.0012 18.8 0.2 3.4 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain OKR_DC_1_N PF03709.10 gi|433592344|ref|YP_007281840.1| - 0.0013 18.7 0.1 0.12 12.4 0.0 2.8 2 0 0 2 2 2 1 Orn/Lys/Arg decarboxylase, N-terminal domain PAS_7 PF12860.2 gi|433592344|ref|YP_007281840.1| - 0.03 14.3 4.0 5.6 7.0 0.4 3.8 3 1 0 3 3 3 0 PAS fold MscS_TM PF12794.2 gi|433592345|ref|YP_007281841.1| - 0.027 13.1 0.6 0.03 12.9 0.4 1.0 1 0 0 1 1 1 0 Mechanosensitive ion channel inner membrane domain 1 PGPGW PF09656.5 gi|433592345|ref|YP_007281841.1| - 0.061 12.6 6.2 0.085 12.1 4.3 1.3 1 0 0 1 1 1 0 Putative transmembrane protein (PGPGW) DUF308 PF03729.8 gi|433592345|ref|YP_007281841.1| - 0.28 11.2 6.7 0.51 10.3 4.7 1.4 1 1 0 1 1 1 0 Short repeat of unknown function (DUF308) VPEP PF07589.6 gi|433592345|ref|YP_007281841.1| - 0.55 10.2 12.4 3.5 7.6 4.9 2.6 2 1 0 2 2 2 0 PEP-CTERM motif TGT PF01702.13 gi|433592347|ref|YP_007281843.1| - 1e-47 162.4 0.0 1.4e-47 162.0 0.0 1.2 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase TGT_C1 PF14809.1 gi|433592347|ref|YP_007281843.1| - 0.045 13.5 0.1 3.9 7.3 0.0 2.4 2 0 0 2 2 2 0 C1 domain of tRNA-guanine transglycosylase dimerisation DUF4229 PF14012.1 gi|433592349|ref|YP_007281845.1| - 0.0054 16.5 0.3 0.0086 15.9 0.2 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF4229) Phage_lysis PF03245.8 gi|433592350|ref|YP_007281846.1| - 0.0038 17.2 1.5 0.0074 16.2 0.1 2.2 2 0 0 2 2 2 1 Bacteriophage Rz lysis protein TGT_C2 PF14810.1 gi|433592351|ref|YP_007281847.1| - 2.2e-18 65.8 0.0 5.8e-18 64.5 0.0 1.8 1 0 0 1 1 1 1 Patch-forming domain C2 of tRNA-guanine transglycosylase TGT PF01702.13 gi|433592351|ref|YP_007281847.1| - 1.8e-15 56.9 0.0 3.2e-15 56.0 0.0 1.4 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase PUA PF01472.15 gi|433592351|ref|YP_007281847.1| - 1.6e-12 46.9 0.2 4.6e-12 45.4 0.1 1.7 1 0 0 1 1 1 1 PUA domain DUF1828 PF08861.5 gi|433592351|ref|YP_007281847.1| - 0.12 12.0 0.0 0.25 11.0 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function DUF1828 DUF308 PF03729.8 gi|433592352|ref|YP_007281848.1| - 1.2e-15 57.2 39.0 1.5e-08 34.5 11.2 3.1 1 1 2 3 3 3 3 Short repeat of unknown function (DUF308) DUF4538 PF15061.1 gi|433592352|ref|YP_007281848.1| - 0.52 9.6 7.6 5.9 6.2 0.1 3.8 3 0 0 3 3 3 0 Domain of unknown function (DUF4538) Fe_dep_repress PF01325.14 gi|433592353|ref|YP_007281849.1| - 2e-10 40.4 0.3 4.9e-10 39.1 0.1 1.7 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain MarR_2 PF12802.2 gi|433592353|ref|YP_007281849.1| - 5.4e-06 25.9 0.0 9.3e-06 25.2 0.0 1.4 1 0 0 1 1 1 1 MarR family Fe_dep_repr_C PF02742.10 gi|433592353|ref|YP_007281849.1| - 2.8e-05 23.7 0.3 6e-05 22.6 0.2 1.6 2 0 0 2 2 2 1 Iron dependent repressor, metal binding and dimerisation domain HTH_12 PF08461.5 gi|433592353|ref|YP_007281849.1| - 0.00085 19.0 0.4 0.0045 16.6 0.1 2.2 2 1 0 2 2 2 1 Ribonuclease R winged-helix domain Ribosomal_S19e PF01090.14 gi|433592353|ref|YP_007281849.1| - 0.0089 15.4 0.0 0.014 14.8 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein S19e MarR PF01047.17 gi|433592353|ref|YP_007281849.1| - 0.013 15.1 0.0 0.024 14.3 0.0 1.5 1 0 0 1 1 1 0 MarR family Rrf2 PF02082.15 gi|433592353|ref|YP_007281849.1| - 0.015 15.4 0.0 0.049 13.7 0.0 1.8 1 1 0 2 2 2 0 Transcriptional regulator HTH_IclR PF09339.5 gi|433592353|ref|YP_007281849.1| - 0.021 14.4 0.1 0.062 12.8 0.0 1.8 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_27 PF13463.1 gi|433592353|ref|YP_007281849.1| - 0.021 15.1 0.0 0.041 14.2 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain LexA_DNA_bind PF01726.11 gi|433592353|ref|YP_007281849.1| - 0.032 13.7 0.0 0.055 13.0 0.0 1.4 1 0 0 1 1 1 0 LexA DNA binding domain HTH_20 PF12840.2 gi|433592353|ref|YP_007281849.1| - 0.041 13.6 0.0 0.085 12.6 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Penicillinase_R PF03965.11 gi|433592353|ref|YP_007281849.1| - 0.12 12.5 0.0 6.2 6.9 0.0 2.2 2 0 0 2 2 2 0 Penicillinase repressor Ferritin PF00210.19 gi|433592354|ref|YP_007281850.1| - 1.5e-26 92.8 8.5 1.8e-26 92.6 5.9 1.1 1 0 0 1 1 1 1 Ferritin-like domain DUF2383 PF09537.5 gi|433592354|ref|YP_007281850.1| - 0.009 16.2 0.5 0.094 12.9 0.0 2.3 2 1 0 2 2 2 1 Domain of unknown function (DUF2383) DUF1664 PF07889.7 gi|433592354|ref|YP_007281850.1| - 0.081 12.7 1.7 0.15 11.8 0.1 2.2 2 1 1 3 3 3 0 Protein of unknown function (DUF1664) CorA PF01544.13 gi|433592354|ref|YP_007281850.1| - 0.37 9.7 3.6 0.62 9.0 2.3 1.5 1 1 0 1 1 1 0 CorA-like Mg2+ transporter protein DUF1451 PF07295.6 gi|433592354|ref|YP_007281850.1| - 0.56 9.9 8.2 0.26 11.0 1.0 2.3 1 1 0 2 2 2 0 Protein of unknown function (DUF1451) TPR_10 PF13374.1 gi|433592354|ref|YP_007281850.1| - 2.3 8.2 5.8 25 4.9 0.1 3.2 4 0 0 4 4 4 0 Tetratricopeptide repeat HTH_10 PF04967.7 gi|433592355|ref|YP_007281851.1| - 6.6e-20 70.4 0.0 1.7e-19 69.0 0.0 1.8 1 0 0 1 1 1 1 HTH DNA binding domain Response_reg PF00072.19 gi|433592355|ref|YP_007281851.1| - 3e-16 59.3 0.1 1.3e-15 57.4 0.1 2.1 1 1 0 1 1 1 1 Response regulator receiver domain GAF_2 PF13185.1 gi|433592355|ref|YP_007281851.1| - 8e-15 55.6 0.3 2.3e-14 54.1 0.2 1.8 1 0 0 1 1 1 1 GAF domain GAF PF01590.21 gi|433592355|ref|YP_007281851.1| - 4.8e-07 30.0 0.0 1.5e-06 28.4 0.0 1.9 1 0 0 1 1 1 1 GAF domain Sigma70_r4_2 PF08281.7 gi|433592355|ref|YP_007281851.1| - 0.0016 17.8 0.0 0.021 14.2 0.0 2.4 1 1 0 1 1 1 1 Sigma-70, region 4 GAF_3 PF13492.1 gi|433592355|ref|YP_007281851.1| - 0.0026 17.8 0.0 0.0083 16.2 0.0 1.9 1 0 0 1 1 1 1 GAF domain HTH_24 PF13412.1 gi|433592355|ref|YP_007281851.1| - 0.085 12.2 0.0 0.16 11.3 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding GerE PF00196.14 gi|433592355|ref|YP_007281851.1| - 0.098 11.9 0.0 0.21 10.9 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family Response_reg PF00072.19 gi|433592356|ref|YP_007281852.1| - 1.8e-22 79.4 0.0 2.1e-22 79.2 0.0 1.1 1 0 0 1 1 1 1 Response regulator receiver domain DDE_Tnp_1 PF01609.16 gi|433592357|ref|YP_007281853.1| - 1.2e-14 54.3 0.0 1.7e-14 53.8 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain Glyoxalase_2 PF12681.2 gi|433592358|ref|YP_007281854.1| - 4.8e-18 65.7 0.6 2.6e-10 40.8 0.0 2.3 2 0 0 2 2 2 2 Glyoxalase-like domain Glyoxalase PF00903.20 gi|433592358|ref|YP_007281854.1| - 5.2e-16 58.7 0.0 1e-09 38.4 0.0 2.4 2 0 0 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.1 gi|433592358|ref|YP_007281854.1| - 7.7e-06 25.9 3.8 0.0053 16.6 0.1 3.3 2 2 1 3 3 3 2 Glyoxalase-like domain Glyoxalase_4 PF13669.1 gi|433592358|ref|YP_007281854.1| - 2.6e-05 24.1 0.8 0.012 15.6 0.1 3.6 2 2 1 3 3 3 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CppA_N PF14506.1 gi|433592358|ref|YP_007281854.1| - 0.005 16.5 0.0 0.033 13.8 0.0 2.2 3 0 0 3 3 3 1 CppA N-terminal Acetyltransf_1 PF00583.19 gi|433592359|ref|YP_007281855.1| - 1.7e-13 50.4 0.1 3.3e-13 49.4 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_4 PF13420.1 gi|433592359|ref|YP_007281855.1| - 1.2e-10 41.5 0.0 2e-10 40.8 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|433592359|ref|YP_007281855.1| - 1e-07 32.1 0.0 1.6e-07 31.6 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|433592359|ref|YP_007281855.1| - 1.5e-05 25.0 0.0 5.2e-05 23.3 0.0 1.9 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|433592359|ref|YP_007281855.1| - 2.7e-05 24.2 0.0 4.8e-05 23.4 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|433592359|ref|YP_007281855.1| - 0.014 15.2 0.0 0.03 14.1 0.0 1.5 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|433592359|ref|YP_007281855.1| - 0.024 14.4 0.0 0.31 10.8 0.0 2.2 2 0 0 2 2 2 0 FR47-like protein Acetyltransf_9 PF13527.1 gi|433592359|ref|YP_007281855.1| - 0.044 13.6 0.0 0.14 11.9 0.0 1.9 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.1 gi|433592359|ref|YP_007281855.1| - 0.071 13.0 0.4 1.1 9.1 0.0 2.6 2 1 1 3 3 3 0 Acetyltransferase (GNAT) domain AphA_like PF14557.1 gi|433592360|ref|YP_007281856.1| - 5.6e-12 45.5 0.0 6.3e-12 45.4 0.0 1.0 1 0 0 1 1 1 1 Putative AphA-like transcriptional regulator PadR PF03551.9 gi|433592360|ref|YP_007281856.1| - 3.3e-07 29.9 0.1 6e-07 29.1 0.1 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_34 PF13601.1 gi|433592360|ref|YP_007281856.1| - 0.012 15.6 0.0 0.024 14.6 0.0 1.6 1 1 0 1 1 1 0 Winged helix DNA-binding domain DUF3356 PF11836.3 gi|433592360|ref|YP_007281856.1| - 0.064 13.0 0.1 0.64 9.8 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3356) HTH_27 PF13463.1 gi|433592360|ref|YP_007281856.1| - 0.12 12.7 0.4 1.1 9.5 0.0 2.3 2 0 0 2 2 2 0 Winged helix DNA-binding domain GPW_gp25 PF04965.9 gi|433592361|ref|YP_007281857.1| - 0.006 16.0 0.8 1.1 8.8 0.0 2.3 1 1 1 2 2 2 2 Gene 25-like lysozyme bact-PGI_C PF10432.4 gi|433592361|ref|YP_007281857.1| - 0.015 15.0 0.0 0.019 14.6 0.0 1.1 1 0 0 1 1 1 0 Bacterial phospho-glucose isomerase C-terminal region PilJ PF13675.1 gi|433592361|ref|YP_007281857.1| - 0.092 13.0 1.5 2.6 8.3 0.1 2.0 1 1 1 2 2 2 0 Type IV pili methyl-accepting chemotaxis transducer N-term DUF4404 PF14357.1 gi|433592361|ref|YP_007281857.1| - 0.28 11.6 2.2 0.2 12.1 0.4 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4404) ThiS PF02597.15 gi|433592363|ref|YP_007281859.1| - 1.2e-19 70.4 0.3 1.3e-19 70.3 0.2 1.0 1 0 0 1 1 1 1 ThiS family Ub-Mut7C PF14451.1 gi|433592363|ref|YP_007281859.1| - 0.042 13.3 0.4 4.6 6.8 0.0 2.2 2 1 0 2 2 2 0 Mut7-C ubiquitin Got1 PF04178.7 gi|433592364|ref|YP_007281860.1| - 0.014 15.4 0.1 0.016 15.3 0.0 1.0 1 0 0 1 1 1 0 Got1/Sft2-like family Kinocilin PF15033.1 gi|433592364|ref|YP_007281860.1| - 0.048 13.1 2.4 0.059 12.9 1.7 1.2 1 0 0 1 1 1 0 Kinocilin protein DUF3566 PF12089.3 gi|433592364|ref|YP_007281860.1| - 0.06 13.3 0.2 0.062 13.3 0.2 1.1 1 0 0 1 1 1 0 Transmembrane domain of unknown function (DUF3566) Oleosin PF01277.12 gi|433592364|ref|YP_007281860.1| - 0.16 11.5 5.1 0.21 11.1 3.6 1.1 1 0 0 1 1 1 0 Oleosin IncA PF04156.9 gi|433592364|ref|YP_007281860.1| - 0.89 9.1 5.9 1.1 8.7 4.1 1.2 1 0 0 1 1 1 0 IncA protein TPPK_C PF12555.3 gi|433592364|ref|YP_007281860.1| - 3.7 7.3 12.0 17 5.1 8.0 1.9 1 1 0 1 1 1 0 Thiamine pyrophosphokinase C terminal AzlC PF03591.9 gi|433592365|ref|YP_007281861.1| - 2.2e-42 144.4 11.8 2.2e-42 144.4 8.2 1.7 2 0 0 2 2 2 1 AzlC protein AzlD PF05437.7 gi|433592366|ref|YP_007281862.1| - 4.7e-17 61.7 6.3 5.4e-17 61.5 4.4 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport protein (AzlD) AmoA PF05145.7 gi|433592366|ref|YP_007281862.1| - 0.012 14.6 1.1 0.012 14.6 0.8 1.4 2 0 0 2 2 2 0 Putative ammonia monooxygenase UPF0016 PF01169.14 gi|433592366|ref|YP_007281862.1| - 2.3 8.4 7.3 0.39 10.9 1.8 2.1 1 1 2 3 3 3 0 Uncharacterized protein family UPF0016 Pyridox_ox_2 PF12900.2 gi|433592369|ref|YP_007281865.1| - 1.8e-13 50.5 0.0 2.4e-13 50.1 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_oxidase PF01243.15 gi|433592369|ref|YP_007281865.1| - 1.2e-06 28.4 0.0 1.6e-06 28.0 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Zn-ribbon_8 PF09723.5 gi|433592370|ref|YP_007281866.1| - 3e-09 36.6 1.2 3.5e-09 36.4 0.9 1.1 1 0 0 1 1 1 1 Zinc ribbon domain zinc_ribbon_2 PF13240.1 gi|433592370|ref|YP_007281866.1| - 2e-06 27.1 1.2 1.8e-05 24.0 0.9 2.0 1 1 0 1 1 1 1 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|433592370|ref|YP_007281866.1| - 2.9e-06 26.2 2.9 0.003 16.6 0.1 2.1 2 0 0 2 2 2 2 zinc-ribbon domain UPF0547 PF10571.4 gi|433592370|ref|YP_007281866.1| - 5.7e-05 22.7 2.2 0.028 14.1 0.1 2.2 2 0 0 2 2 2 2 Uncharacterised protein family UPF0547 zf-Di19 PF05605.7 gi|433592370|ref|YP_007281866.1| - 0.00021 21.3 1.9 0.0065 16.5 1.3 2.0 1 1 0 1 1 1 1 Drought induced 19 protein (Di19), zinc-binding DZR PF12773.2 gi|433592370|ref|YP_007281866.1| - 0.00031 20.5 1.1 0.00048 19.8 0.7 1.4 1 1 0 1 1 1 1 Double zinc ribbon Sgf11 PF08209.6 gi|433592370|ref|YP_007281866.1| - 0.00036 19.7 0.4 0.044 13.0 0.1 2.1 2 0 0 2 2 2 1 Sgf11 (transcriptional regulation protein) zf-dskA_traR PF01258.12 gi|433592370|ref|YP_007281866.1| - 0.00043 19.9 0.8 0.17 11.6 0.4 2.1 2 0 0 2 2 2 1 Prokaryotic dksA/traR C4-type zinc finger DNA_ligase_ZBD PF03119.11 gi|433592370|ref|YP_007281866.1| - 0.00051 19.6 6.9 0.012 15.3 0.1 2.1 2 0 0 2 2 2 1 NAD-dependent DNA ligase C4 zinc finger domain zf-ISL3 PF14690.1 gi|433592370|ref|YP_007281866.1| - 0.00066 19.6 0.9 0.083 12.9 0.0 2.1 1 1 1 2 2 2 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 OrfB_Zn_ribbon PF07282.6 gi|433592370|ref|YP_007281866.1| - 0.00077 19.0 0.3 0.001 18.6 0.2 1.2 1 0 0 1 1 1 1 Putative transposase DNA-binding domain RNHCP PF12647.2 gi|433592370|ref|YP_007281866.1| - 0.00093 18.9 0.4 0.00097 18.9 0.3 1.1 1 0 0 1 1 1 1 RNHCP domain Elf1 PF05129.8 gi|433592370|ref|YP_007281866.1| - 0.0014 18.3 0.4 0.0017 18.0 0.3 1.2 1 0 0 1 1 1 1 Transcription elongation factor Elf1 like HypA PF01155.14 gi|433592370|ref|YP_007281866.1| - 0.0015 18.1 0.7 0.0015 18.1 0.5 1.1 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family TF_Zn_Ribbon PF08271.7 gi|433592370|ref|YP_007281866.1| - 0.0023 17.2 5.7 0.013 14.8 0.4 2.1 1 1 0 2 2 2 1 TFIIB zinc-binding Prok-RING_4 PF14447.1 gi|433592370|ref|YP_007281866.1| - 0.003 17.0 1.0 0.24 10.9 0.1 2.1 2 0 0 2 2 2 1 Prokaryotic RING finger family 4 zf-C4_Topoisom PF01396.14 gi|433592370|ref|YP_007281866.1| - 0.0047 16.4 0.9 0.18 11.2 0.0 2.1 2 0 0 2 2 2 1 Topoisomerase DNA binding C4 zinc finger Rubredoxin PF00301.15 gi|433592370|ref|YP_007281866.1| - 0.0051 16.6 0.1 2.3 8.1 0.0 2.1 2 0 0 2 2 2 0 Rubredoxin Prok-RING_1 PF14446.1 gi|433592370|ref|YP_007281866.1| - 0.0056 16.3 0.4 2.5 7.8 0.0 2.1 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 DUF329 PF03884.9 gi|433592370|ref|YP_007281866.1| - 0.0057 16.1 2.1 0.41 10.2 0.1 2.1 1 1 1 2 2 2 1 Domain of unknown function (DUF329) Cys_rich_CPXG PF14255.1 gi|433592370|ref|YP_007281866.1| - 0.0062 16.3 0.9 0.0089 15.8 0.7 1.4 1 1 0 1 1 1 1 Cysteine-rich CPXCG DUF1610 PF07754.6 gi|433592370|ref|YP_007281866.1| - 0.007 16.4 5.8 0.13 12.3 0.5 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF1610) TerY-C PF15616.1 gi|433592370|ref|YP_007281866.1| - 0.0074 16.2 3.4 0.27 11.1 0.1 2.0 1 1 1 2 2 2 1 TerY-C metal binding domain DUF2072 PF09845.4 gi|433592370|ref|YP_007281866.1| - 0.0081 16.0 0.5 0.01 15.7 0.3 1.3 1 1 0 1 1 1 1 Zn-ribbon containing protein (DUF2072) zf-IS66 PF13005.2 gi|433592370|ref|YP_007281866.1| - 0.0081 16.1 0.9 2 8.4 0.0 2.2 2 0 0 2 2 2 1 zinc-finger binding domain of transposase IS66 CpXC PF14353.1 gi|433592370|ref|YP_007281866.1| - 0.0096 15.8 1.8 0.23 11.4 0.2 2.0 1 1 1 2 2 2 1 CpXC protein Nudix_N_2 PF14803.1 gi|433592370|ref|YP_007281866.1| - 0.0098 15.5 1.9 1.7 8.3 0.1 2.1 2 0 0 2 2 2 1 Nudix N-terminal zf-C3HC4_3 PF13920.1 gi|433592370|ref|YP_007281866.1| - 0.01 15.4 0.8 0.031 13.9 0.6 1.7 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) DUF2116 PF09889.4 gi|433592370|ref|YP_007281866.1| - 0.012 15.4 2.4 2.1 8.1 0.1 2.1 2 0 0 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) zf-TFIIB PF13453.1 gi|433592370|ref|YP_007281866.1| - 0.012 14.7 2.6 0.016 14.3 1.8 1.2 1 0 0 1 1 1 0 Transcription factor zinc-finger zf-HYPF PF07503.7 gi|433592370|ref|YP_007281866.1| - 0.013 14.9 1.3 0.026 13.9 0.9 1.6 1 1 0 1 1 1 0 HypF finger zinc_ribbon_4 PF13717.1 gi|433592370|ref|YP_007281866.1| - 0.013 15.1 1.0 0.022 14.4 0.7 1.4 1 1 0 1 1 1 0 zinc-ribbon domain zf-LITAF-like PF10601.4 gi|433592370|ref|YP_007281866.1| - 0.014 15.1 1.7 3.2 7.6 0.1 2.1 1 1 1 2 2 2 0 LITAF-like zinc ribbon domain Ogr_Delta PF04606.7 gi|433592370|ref|YP_007281866.1| - 0.016 14.8 1.2 0.71 9.5 0.1 2.3 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger zinc_ribbon_5 PF13719.1 gi|433592370|ref|YP_007281866.1| - 0.017 14.6 1.2 0.031 13.8 0.8 1.4 1 1 0 1 1 1 0 zinc-ribbon domain zf-NADH-PPase PF09297.6 gi|433592370|ref|YP_007281866.1| - 0.02 14.3 1.7 2.7 7.5 0.0 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Nop10p PF04135.7 gi|433592370|ref|YP_007281866.1| - 0.026 14.2 0.9 1.5 8.5 0.0 2.1 1 1 1 2 2 2 0 Nucleolar RNA-binding protein, Nop10p family zinc-ribbons_6 PF07191.7 gi|433592370|ref|YP_007281866.1| - 0.026 14.2 1.0 0.13 12.0 0.7 1.8 1 1 0 1 1 1 0 zinc-ribbons zf-C2H2 PF00096.21 gi|433592370|ref|YP_007281866.1| - 0.028 14.7 0.4 4.7 7.7 0.0 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type YhfH PF14149.1 gi|433592370|ref|YP_007281866.1| - 0.028 14.1 2.2 0.1 12.4 0.2 2.1 2 0 0 2 2 2 0 YhfH-like protein zf-C2H2_4 PF13894.1 gi|433592370|ref|YP_007281866.1| - 0.032 14.5 0.1 5.2 7.6 0.0 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger FYDLN_acid PF09538.5 gi|433592370|ref|YP_007281866.1| - 0.033 14.7 0.5 0.63 10.6 0.0 2.0 1 1 1 2 2 2 0 Protein of unknown function (FYDLN_acid) Kp4 PF09044.5 gi|433592370|ref|YP_007281866.1| - 0.036 13.8 0.1 0.038 13.8 0.1 1.1 1 0 0 1 1 1 0 Kp4 Terminase_GpA PF05876.7 gi|433592370|ref|YP_007281866.1| - 0.04 12.2 0.6 0.04 12.2 0.4 1.0 1 0 0 1 1 1 0 Phage terminase large subunit (GpA) Desulfoferrod_N PF06397.7 gi|433592370|ref|YP_007281866.1| - 0.042 13.2 0.4 1.6 8.1 0.0 2.1 2 0 0 2 2 2 0 Desulfoferrodoxin, N-terminal domain zf-C2H2_6 PF13912.1 gi|433592370|ref|YP_007281866.1| - 0.044 13.7 1.9 2.4 8.1 0.1 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger zf-DNA_Pol PF08996.5 gi|433592370|ref|YP_007281866.1| - 0.048 13.0 0.5 0.083 12.2 0.4 1.5 1 1 0 1 1 1 0 DNA Polymerase alpha zinc finger zf-Mss51 PF13824.1 gi|433592370|ref|YP_007281866.1| - 0.054 13.3 3.7 0.79 9.6 0.2 2.1 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-CSL PF05207.8 gi|433592370|ref|YP_007281866.1| - 0.057 12.9 0.5 0.065 12.7 0.4 1.3 1 0 0 1 1 1 0 CSL zinc finger zf-CHY PF05495.7 gi|433592370|ref|YP_007281866.1| - 0.061 13.4 0.5 0.061 13.4 0.3 1.1 1 0 0 1 1 1 0 CHY zinc finger Zn_Tnp_IS1595 PF12760.2 gi|433592370|ref|YP_007281866.1| - 0.062 13.1 3.1 0.63 9.8 0.1 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Acetone_carb_G PF08882.6 gi|433592370|ref|YP_007281866.1| - 0.066 13.2 2.1 0.34 10.9 1.7 1.8 1 1 1 2 2 2 0 Acetone carboxylase gamma subunit Rad50_zn_hook PF04423.9 gi|433592370|ref|YP_007281866.1| - 0.088 12.2 3.3 0.49 9.9 0.1 2.1 1 1 1 2 2 2 0 Rad50 zinc hook motif TFIIS_C PF01096.13 gi|433592370|ref|YP_007281866.1| - 0.098 12.3 0.7 4 7.1 0.1 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) PhnA_Zn_Ribbon PF08274.7 gi|433592370|ref|YP_007281866.1| - 0.1 12.3 5.1 0.25 11.1 0.8 2.1 2 0 0 2 2 2 0 PhnA Zinc-Ribbon DUF1936 PF09151.5 gi|433592370|ref|YP_007281866.1| - 0.11 12.0 0.5 5.1 6.6 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF1936) Zn_Tnp_IS91 PF14319.1 gi|433592370|ref|YP_007281866.1| - 0.13 11.7 0.5 0.14 11.6 0.3 1.1 1 0 0 1 1 1 0 Transposase zinc-binding domain Lar_restr_allev PF14354.1 gi|433592370|ref|YP_007281866.1| - 0.13 12.5 3.3 4.1 7.7 0.2 1.9 1 1 1 2 2 2 0 Restriction alleviation protein Lar T4_baseplate PF12322.3 gi|433592370|ref|YP_007281866.1| - 0.19 10.9 0.4 0.32 10.2 0.1 1.4 1 1 1 2 2 2 0 T4 bacteriophage base plate protein DUF2296 PF10058.4 gi|433592370|ref|YP_007281866.1| - 0.19 11.4 1.1 0.52 10.0 0.8 1.7 1 1 0 1 1 1 0 Predicted integral membrane metal-binding protein (DUF2296) zf-H2C2_2 PF13465.1 gi|433592370|ref|YP_007281866.1| - 0.2 12.0 1.6 4.7 7.6 0.2 2.2 2 0 0 2 2 2 0 Zinc-finger double domain Cys_rich_CWC PF14375.1 gi|433592370|ref|YP_007281866.1| - 0.24 11.3 1.3 16 5.5 0.1 2.1 2 0 0 2 2 2 0 Cysteine-rich CWC Cys_rich_CPCC PF14206.1 gi|433592370|ref|YP_007281866.1| - 0.35 10.4 1.8 0.5 9.9 1.3 1.4 1 1 0 1 1 1 0 Cysteine-rich CPCC DUF1272 PF06906.6 gi|433592370|ref|YP_007281866.1| - 0.45 10.4 2.5 13 5.7 0.1 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1272) Prim_Zn_Ribbon PF08273.7 gi|433592370|ref|YP_007281866.1| - 1.2 9.2 5.2 5.5 7.1 0.6 2.1 2 0 0 2 2 2 0 Zinc-binding domain of primase-helicase DUF3797 PF12677.2 gi|433592370|ref|YP_007281866.1| - 1.4 8.5 3.7 5.4 6.7 0.3 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) zf-tcix PF14952.1 gi|433592370|ref|YP_007281866.1| - 2.2 7.7 4.9 13 5.2 0.4 2.2 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding HTH_10 PF04967.7 gi|433592371|ref|YP_007281867.1| - 1e-19 69.8 0.1 1.6e-19 69.2 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain LexA_DNA_bind PF01726.11 gi|433592371|ref|YP_007281867.1| - 0.073 12.6 0.1 0.34 10.5 0.1 2.0 1 1 0 1 1 1 0 LexA DNA binding domain GerE PF00196.14 gi|433592371|ref|YP_007281867.1| - 0.12 11.6 0.2 3 7.2 0.0 2.2 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family HTH_20 PF12840.2 gi|433592372|ref|YP_007281868.1| - 5.5e-12 45.2 0.6 7.6e-12 44.8 0.4 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|433592372|ref|YP_007281868.1| - 5.3e-05 22.7 0.0 7e-05 22.3 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain ArsR PF09824.4 gi|433592372|ref|YP_007281868.1| - 9.7e-05 21.7 0.0 0.00013 21.3 0.0 1.1 1 0 0 1 1 1 1 ArsR transcriptional regulator TrmB PF01978.14 gi|433592372|ref|YP_007281868.1| - 0.00011 21.8 0.0 0.00015 21.3 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|433592372|ref|YP_007281868.1| - 0.00015 21.3 0.1 0.00022 20.8 0.1 1.3 1 0 0 1 1 1 1 MarR family Ribosomal_S25 PF03297.10 gi|433592372|ref|YP_007281868.1| - 0.013 15.5 0.0 0.016 15.2 0.0 1.1 1 0 0 1 1 1 0 S25 ribosomal protein FUR PF01475.14 gi|433592372|ref|YP_007281868.1| - 0.029 14.3 0.0 0.036 13.9 0.0 1.2 1 0 0 1 1 1 0 Ferric uptake regulator family HTH_24 PF13412.1 gi|433592372|ref|YP_007281868.1| - 0.064 12.6 0.0 0.097 12.0 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding AFOR_C PF01314.13 gi|433592373|ref|YP_007281869.1| - 2e-123 411.8 4.7 2.4e-123 411.6 3.2 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.10 gi|433592373|ref|YP_007281869.1| - 8.1e-77 257.1 0.0 1.4e-76 256.3 0.0 1.4 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain DUF1328 PF07043.8 gi|433592374|ref|YP_007281870.1| - 4.3e-10 39.4 20.4 5.5e-10 39.0 14.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1328) DUF2206 PF09971.4 gi|433592374|ref|YP_007281870.1| - 0.25 10.1 3.4 0.27 9.9 2.4 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2206) DUF3784 PF12650.2 gi|433592374|ref|YP_007281870.1| - 0.56 10.1 6.4 0.75 9.7 4.4 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3784) PAS_9 PF13426.1 gi|433592375|ref|YP_007281871.1| - 2.2e-31 108.3 0.7 4.2e-28 97.7 0.1 2.9 3 0 0 3 3 3 2 PAS domain HTH_10 PF04967.7 gi|433592375|ref|YP_007281871.1| - 2.3e-19 68.6 0.0 6.7e-19 67.2 0.0 1.8 2 0 0 2 2 2 1 HTH DNA binding domain PAS PF00989.19 gi|433592375|ref|YP_007281871.1| - 6.5e-17 61.3 0.5 6.3e-12 45.2 0.0 3.1 3 0 0 3 3 3 2 PAS fold PAS_4 PF08448.5 gi|433592375|ref|YP_007281871.1| - 1.2e-13 51.0 0.5 2e-10 40.6 0.1 3.1 2 0 0 2 2 2 2 PAS fold PAS_8 PF13188.1 gi|433592375|ref|YP_007281871.1| - 4.6e-10 38.9 0.1 0.00036 20.2 0.0 2.6 2 0 0 2 2 2 2 PAS domain PAS_3 PF08447.6 gi|433592375|ref|YP_007281871.1| - 9.2e-10 38.5 0.1 2.2e-09 37.2 0.0 1.7 1 0 0 1 1 1 1 PAS fold GAF_2 PF13185.1 gi|433592375|ref|YP_007281871.1| - 4.8e-07 30.3 0.5 3.6e-06 27.5 0.1 2.7 2 1 0 2 2 2 1 GAF domain GAF_3 PF13492.1 gi|433592375|ref|YP_007281871.1| - 0.026 14.5 0.2 0.14 12.2 0.0 2.3 3 0 0 3 3 3 0 GAF domain HTH_11 PF08279.7 gi|433592375|ref|YP_007281871.1| - 0.036 13.7 0.0 0.085 12.5 0.0 1.5 1 0 0 1 1 1 0 HTH domain DUF134 PF02001.11 gi|433592375|ref|YP_007281871.1| - 0.039 13.8 0.0 0.1 12.4 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function DUF134 UPF0547 PF10571.4 gi|433592376|ref|YP_007281872.1| - 4.4e-05 23.0 2.3 0.0022 17.6 0.0 2.1 2 0 0 2 2 2 1 Uncharacterised protein family UPF0547 Zn-ribbon_8 PF09723.5 gi|433592376|ref|YP_007281872.1| - 0.00022 21.1 2.3 0.024 14.5 0.2 2.1 2 0 0 2 2 2 1 Zinc ribbon domain zf-ribbon_3 PF13248.1 gi|433592376|ref|YP_007281872.1| - 0.00037 19.6 0.8 0.032 13.4 0.0 2.1 2 0 0 2 2 2 1 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|433592376|ref|YP_007281872.1| - 0.0014 18.4 3.6 0.045 13.5 3.0 2.1 1 1 1 2 2 2 2 Transposase zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|433592376|ref|YP_007281872.1| - 0.0015 17.7 1.6 0.061 12.6 0.1 2.1 2 0 0 2 2 2 1 TFIIB zinc-binding zf-NADH-PPase PF09297.6 gi|433592376|ref|YP_007281872.1| - 0.0027 17.1 0.6 0.23 11.0 0.0 2.5 2 0 0 2 2 2 1 NADH pyrophosphatase zinc ribbon domain OrfB_Zn_ribbon PF07282.6 gi|433592376|ref|YP_007281872.1| - 0.0038 16.8 0.5 0.0049 16.5 0.3 1.3 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Nudix_N_2 PF14803.1 gi|433592376|ref|YP_007281872.1| - 0.0092 15.6 1.1 2 8.1 0.1 2.4 2 0 0 2 2 2 1 Nudix N-terminal DZR PF12773.2 gi|433592376|ref|YP_007281872.1| - 0.0099 15.6 1.3 0.095 12.5 0.9 2.0 1 1 0 1 1 1 1 Double zinc ribbon DUF2296 PF10058.4 gi|433592376|ref|YP_007281872.1| - 0.024 14.3 0.5 5 6.9 0.0 2.1 2 0 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) A2L_zn_ribbon PF08792.5 gi|433592376|ref|YP_007281872.1| - 0.057 12.8 2.0 1.2 8.7 0.1 2.1 2 0 0 2 2 2 0 A2L zinc ribbon domain PhnA_Zn_Ribbon PF08274.7 gi|433592376|ref|YP_007281872.1| - 0.061 13.1 2.3 2.2 8.1 0.0 2.2 2 0 0 2 2 2 0 PhnA Zinc-Ribbon zf-RING_3 PF14369.1 gi|433592376|ref|YP_007281872.1| - 0.079 12.9 0.3 12 6.0 0.0 2.2 2 0 0 2 2 2 0 zinc-finger Rubredoxin PF00301.15 gi|433592376|ref|YP_007281872.1| - 0.088 12.6 5.2 1.1 9.1 3.5 2.2 1 1 1 2 2 2 0 Rubredoxin zf-H2C2_2 PF13465.1 gi|433592376|ref|YP_007281872.1| - 0.091 13.0 0.6 16 5.9 0.1 2.2 2 0 0 2 2 2 0 Zinc-finger double domain zf-ISL3 PF14690.1 gi|433592376|ref|YP_007281872.1| - 0.13 12.2 1.4 1.3 9.0 0.1 2.1 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 PolC_DP2 PF03833.8 gi|433592376|ref|YP_007281872.1| - 0.14 9.8 0.2 0.15 9.6 0.1 1.0 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 zinc_ribbon_2 PF13240.1 gi|433592376|ref|YP_007281872.1| - 0.2 11.1 1.8 0.72 9.4 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain zf-IS66 PF13005.2 gi|433592376|ref|YP_007281872.1| - 0.52 10.3 4.0 12 5.9 0.2 2.4 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 zf-Mss51 PF13824.1 gi|433592376|ref|YP_007281872.1| - 0.93 9.4 3.0 13 5.7 2.1 2.3 1 1 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 DUF2387 PF09526.5 gi|433592376|ref|YP_007281872.1| - 1.1 9.1 3.6 4.9 7.1 0.1 2.0 1 1 1 2 2 2 0 Probable metal-binding protein (DUF2387) DUF1610 PF07754.6 gi|433592376|ref|YP_007281872.1| - 1.9 8.6 7.6 2.8 8.1 0.6 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) Pec_lyase_C PF00544.14 gi|433592377|ref|YP_007281873.1| - 0.17 11.3 5.0 4 6.8 0.1 3.0 1 1 1 2 2 2 0 Pectate lyase T2SM PF04612.7 gi|433592377|ref|YP_007281873.1| - 0.17 11.6 1.4 0.53 10.0 1.0 1.8 1 0 0 1 1 1 0 Type II secretion system (T2SS), protein M NUDIX PF00293.23 gi|433592378|ref|YP_007281874.1| - 1.1e-14 54.1 0.5 1.4e-14 53.8 0.4 1.1 1 0 0 1 1 1 1 NUDIX domain LysR_substrate PF03466.15 gi|433592378|ref|YP_007281874.1| - 0.0016 17.5 0.3 0.0032 16.5 0.2 1.4 1 1 0 1 1 1 1 LysR substrate binding domain PadR PF03551.9 gi|433592379|ref|YP_007281875.1| - 4.4e-13 48.7 0.1 5.3e-13 48.5 0.1 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_27 PF13463.1 gi|433592379|ref|YP_007281875.1| - 2.4e-06 27.7 0.0 3.5e-06 27.2 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_34 PF13601.1 gi|433592379|ref|YP_007281875.1| - 0.00013 21.9 0.0 0.00017 21.5 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_45 PF14947.1 gi|433592379|ref|YP_007281875.1| - 0.0008 19.1 0.0 0.0028 17.4 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DUF1495 PF07381.6 gi|433592379|ref|YP_007281875.1| - 0.017 14.7 0.0 0.023 14.3 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) Penicillinase_R PF03965.11 gi|433592379|ref|YP_007281875.1| - 0.078 13.0 0.0 0.085 12.9 0.0 1.1 1 0 0 1 1 1 0 Penicillinase repressor DUF4364 PF14277.1 gi|433592379|ref|YP_007281875.1| - 0.15 11.7 0.0 0.25 10.9 0.0 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4364) TAT_signal PF10518.4 gi|433592382|ref|YP_007281878.1| - 0.059 13.3 4.3 0.082 12.9 3.0 1.2 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Spore_YhcN_YlaJ PF09580.5 gi|433592382|ref|YP_007281878.1| - 0.083 12.9 3.0 0.095 12.8 2.1 1.1 1 0 0 1 1 1 0 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) LPAM_2 PF13627.1 gi|433592382|ref|YP_007281878.1| - 1.1 9.0 4.6 1.7 8.4 3.2 1.4 1 1 0 1 1 1 0 Prokaryotic lipoprotein-attachment site Pyridox_oxidase PF01243.15 gi|433592383|ref|YP_007281879.1| - 6e-16 58.2 0.0 7.7e-16 57.8 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_ox_2 PF12900.2 gi|433592383|ref|YP_007281879.1| - 2e-09 37.4 0.1 2.5e-09 37.0 0.0 1.0 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase PELOTA_1 PF15608.1 gi|433592383|ref|YP_007281879.1| - 0.022 14.5 0.2 0.057 13.2 0.1 1.6 1 1 0 1 1 1 0 PELOTA RNA binding domain DUF2255 PF10012.4 gi|433592383|ref|YP_007281879.1| - 0.12 12.3 0.0 0.73 9.8 0.0 1.8 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2255) DUF2435 PF10363.4 gi|433592383|ref|YP_007281879.1| - 0.14 12.0 0.0 0.19 11.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2435) TPP_enzyme_N PF02776.13 gi|433592384|ref|YP_007281880.1| - 4.3e-54 182.5 0.1 8.8e-54 181.5 0.1 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_M PF00205.17 gi|433592384|ref|YP_007281880.1| - 1e-33 115.9 0.3 2.4e-33 114.8 0.2 1.6 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain TPP_enzyme_C PF02775.16 gi|433592384|ref|YP_007281880.1| - 1.1e-31 109.4 1.2 1e-30 106.3 0.1 2.3 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain E3_binding PF02817.12 gi|433592384|ref|YP_007281880.1| - 0.073 12.7 0.3 0.22 11.1 0.0 2.0 2 0 0 2 2 2 0 e3 binding domain NPP1 PF05630.6 gi|433592385|ref|YP_007281881.1| - 0.12 12.0 1.7 0.31 10.7 1.2 1.7 1 1 0 1 1 1 0 Necrosis inducing protein (NPP1) DUF2012 PF09430.5 gi|433592385|ref|YP_007281881.1| - 0.21 11.4 0.0 0.49 10.2 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2012) TAT_signal PF10518.4 gi|433592385|ref|YP_007281881.1| - 2.3 8.4 10.2 0.045 13.7 2.0 2.2 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence Zn-ribbon_8 PF09723.5 gi|433592386|ref|YP_007281882.1| - 0.11 12.5 0.3 0.21 11.5 0.2 1.6 1 1 0 1 1 1 0 Zinc ribbon domain Methyltrn_RNA_2 PF04013.7 gi|433592387|ref|YP_007281883.1| - 5.9e-52 176.1 0.0 6.6e-52 175.9 0.0 1.0 1 0 0 1 1 1 1 Putative SAM-dependent RNA methyltransferase Methyltrans_RNA PF04452.9 gi|433592387|ref|YP_007281883.1| - 0.044 12.8 0.0 0.07 12.2 0.0 1.3 1 0 0 1 1 1 0 RNA methyltransferase DUF457 PF04307.9 gi|433592389|ref|YP_007281885.1| - 7e-14 51.4 4.6 9.1e-14 51.0 3.2 1.1 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) DUF4184 PF13803.1 gi|433592389|ref|YP_007281885.1| - 0.017 14.4 0.5 0.03 13.6 0.1 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4184) Lar_restr_allev PF14354.1 gi|433592390|ref|YP_007281886.1| - 0.019 15.2 0.9 0.024 14.9 0.6 1.2 1 0 0 1 1 1 0 Restriction alleviation protein Lar Zn-ribbon_8 PF09723.5 gi|433592390|ref|YP_007281886.1| - 0.035 14.0 2.0 0.1 12.5 1.4 1.7 1 1 0 1 1 1 0 Zinc ribbon domain TF_Zn_Ribbon PF08271.7 gi|433592390|ref|YP_007281886.1| - 0.16 11.2 2.4 0.24 10.7 1.7 1.2 1 0 0 1 1 1 0 TFIIB zinc-binding DZR PF12773.2 gi|433592390|ref|YP_007281886.1| - 0.2 11.5 1.8 0.5 10.2 1.2 1.7 1 1 0 1 1 1 0 Double zinc ribbon PhnA_Zn_Ribbon PF08274.7 gi|433592390|ref|YP_007281886.1| - 0.28 11.0 3.2 3.1 7.6 2.2 2.0 1 1 0 1 1 1 0 PhnA Zinc-Ribbon zf-TFIIB PF13453.1 gi|433592390|ref|YP_007281886.1| - 0.52 9.5 2.6 0.77 8.9 1.8 1.3 1 0 0 1 1 1 0 Transcription factor zinc-finger Prok-RING_1 PF14446.1 gi|433592390|ref|YP_007281886.1| - 0.8 9.4 4.3 2 8.2 3.0 1.6 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 Opy2 PF09463.5 gi|433592390|ref|YP_007281886.1| - 0.89 9.6 4.2 1.1 9.4 0.5 2.1 2 0 0 2 2 2 0 Opy2 protein zf-ribbon_3 PF13248.1 gi|433592390|ref|YP_007281886.1| - 1.2 8.4 5.0 2.5 7.4 3.5 1.6 1 1 0 1 1 1 0 zinc-ribbon domain DUF4231 PF14015.1 gi|433592391|ref|YP_007281887.1| - 0.12 12.3 1.3 0.13 12.2 0.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4231) Trypsin_2 PF13365.1 gi|433592393|ref|YP_007281889.1| - 7.8e-19 67.8 1.2 1.3e-18 67.1 0.9 1.3 1 0 0 1 1 1 1 Trypsin-like peptidase domain Trypsin PF00089.21 gi|433592393|ref|YP_007281889.1| - 7.6e-13 48.5 0.8 4.4e-12 46.0 0.6 1.9 1 1 0 1 1 1 1 Trypsin PDZ_2 PF13180.1 gi|433592393|ref|YP_007281889.1| - 6.6e-11 41.9 0.0 1.2e-10 41.1 0.0 1.4 1 0 0 1 1 1 1 PDZ domain UCR_Fe-S_N PF10399.4 gi|433592393|ref|YP_007281889.1| - 0.0058 15.7 0.7 0.014 14.5 0.5 1.7 1 0 0 1 1 1 1 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal Pico_P2A PF00947.14 gi|433592393|ref|YP_007281889.1| - 0.038 13.7 0.1 0.084 12.6 0.1 1.5 1 0 0 1 1 1 0 Picornavirus core protein 2A DUF2112 PF09885.4 gi|433592393|ref|YP_007281889.1| - 0.081 12.5 0.0 0.14 11.8 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2112) Peptidase_S7 PF00949.16 gi|433592393|ref|YP_007281889.1| - 0.16 11.3 0.8 0.3 10.4 0.5 1.4 1 0 0 1 1 1 0 Peptidase S7, Flavivirus NS3 serine protease TAT_signal PF10518.4 gi|433592393|ref|YP_007281889.1| - 0.41 10.7 4.0 1.6 8.9 2.8 2.1 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence THUMP PF02926.12 gi|433592394|ref|YP_007281890.1| - 2.9e-07 30.4 0.0 7.6e-07 29.1 0.0 1.7 2 0 0 2 2 2 1 THUMP domain DnaJ_CXXCXGXG PF00684.14 gi|433592394|ref|YP_007281890.1| - 0.011 15.7 4.7 0.013 15.5 0.4 2.8 3 0 0 3 3 3 0 DnaJ central domain RHH_1 PF01402.16 gi|433592395|ref|YP_007281891.1| - 0.001 18.8 0.5 0.0039 17.0 0.1 2.0 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family Ubiq-assoc PF09145.5 gi|433592395|ref|YP_007281891.1| - 0.03 14.1 0.0 0.06 13.2 0.0 1.5 1 0 0 1 1 1 0 Ubiquitin-associated RNase_HII PF01351.13 gi|433592396|ref|YP_007281892.1| - 2.9e-33 115.1 0.0 3.5e-33 114.9 0.0 1.0 1 0 0 1 1 1 1 Ribonuclease HII ABC2_membrane_4 PF12730.2 gi|433592397|ref|YP_007281893.1| - 8 5.5 15.1 14 4.7 10.5 1.4 1 1 0 1 1 1 0 ABC-2 family transporter protein DUF202 PF02656.10 gi|433592398|ref|YP_007281894.1| - 0.088 13.0 10.7 21 5.4 7.4 2.3 1 1 0 1 1 1 0 Domain of unknown function (DUF202) CytB6-F_Fe-S PF08802.5 gi|433592398|ref|YP_007281894.1| - 0.23 11.4 5.7 7.7 6.6 0.8 2.9 2 0 0 2 2 2 0 Cytochrome B6-F complex Fe-S subunit DUF2644 PF10841.3 gi|433592398|ref|YP_007281894.1| - 0.5 10.4 6.4 0.92 9.5 1.1 2.6 1 1 1 2 2 2 0 Protein of unknown function (DUF2644) DUF2232 PF09991.4 gi|433592398|ref|YP_007281894.1| - 0.8 8.6 6.0 0.98 8.3 4.1 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2232) Abi PF02517.11 gi|433592399|ref|YP_007281895.1| - 4.7e-11 42.6 10.0 4.7e-11 42.6 6.9 2.5 3 0 0 3 3 3 2 CAAX protease self-immunity DUF3761 PF12587.3 gi|433592399|ref|YP_007281895.1| - 0.39 10.8 2.9 0.19 11.8 0.2 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3761) Lon_C PF05362.8 gi|433592400|ref|YP_007281896.1| - 9.2e-35 119.8 3.6 1.4e-34 119.2 2.5 1.3 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain AAA_32 PF13654.1 gi|433592400|ref|YP_007281896.1| - 1.2e-28 100.0 0.0 4.1e-21 75.2 0.0 2.2 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.16 gi|433592400|ref|YP_007281896.1| - 7.8e-17 61.1 0.1 4.9e-10 38.9 0.0 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.21 gi|433592400|ref|YP_007281896.1| - 2.4e-14 53.1 0.0 3.1e-08 33.2 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain ChlI PF13541.1 gi|433592400|ref|YP_007281896.1| - 8.6e-11 41.4 0.7 1.9e-10 40.3 0.5 1.6 1 0 0 1 1 1 1 Subunit ChlI of Mg-chelatase AAA_5 PF07728.9 gi|433592400|ref|YP_007281896.1| - 2.5e-09 36.9 0.0 0.0012 18.5 0.0 2.7 3 0 0 3 3 2 2 AAA domain (dynein-related subfamily) MCM PF00493.18 gi|433592400|ref|YP_007281896.1| - 5.8e-09 35.1 0.9 0.054 12.2 0.0 3.2 3 0 0 3 3 3 3 MCM2/3/5 family RuvB_N PF05496.7 gi|433592400|ref|YP_007281896.1| - 2.2e-06 26.9 0.1 0.00074 18.6 0.0 2.3 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus AAA PF00004.24 gi|433592400|ref|YP_007281896.1| - 3.5e-06 27.2 0.0 0.03 14.5 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) Sigma54_activ_2 PF14532.1 gi|433592400|ref|YP_007281896.1| - 3.1e-05 24.0 0.0 0.1 12.6 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain TIP49 PF06068.8 gi|433592400|ref|YP_007281896.1| - 8e-05 21.5 0.1 0.014 14.1 0.0 2.4 2 0 0 2 2 2 1 TIP49 C-terminus AAA_3 PF07726.6 gi|433592400|ref|YP_007281896.1| - 8.9e-05 22.1 0.2 0.18 11.3 0.0 2.9 3 0 0 3 3 3 2 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|433592400|ref|YP_007281896.1| - 0.00025 21.1 0.0 0.014 15.4 0.0 2.6 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|433592400|ref|YP_007281896.1| - 0.0023 17.6 0.0 0.0068 16.1 0.0 1.8 1 0 0 1 1 1 1 Part of AAA domain AAA_33 PF13671.1 gi|433592400|ref|YP_007281896.1| - 0.0029 17.5 0.2 0.036 13.9 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.1 gi|433592400|ref|YP_007281896.1| - 0.0029 17.2 0.0 0.042 13.4 0.0 2.2 2 0 0 2 2 2 1 AAA domain PhoH PF02562.11 gi|433592400|ref|YP_007281896.1| - 0.0036 16.5 0.0 0.0088 15.2 0.0 1.7 1 0 0 1 1 1 1 PhoH-like protein AAA_18 PF13238.1 gi|433592400|ref|YP_007281896.1| - 0.0051 17.1 0.0 0.02 15.1 0.0 2.1 1 0 0 1 1 1 1 AAA domain T2SE PF00437.15 gi|433592400|ref|YP_007281896.1| - 0.0072 15.2 0.0 0.03 13.2 0.0 2.0 3 0 0 3 3 3 1 Type II/IV secretion system protein AAA_PrkA PF08298.6 gi|433592400|ref|YP_007281896.1| - 0.0085 14.8 0.0 0.23 10.1 0.0 2.2 2 0 0 2 2 2 1 PrkA AAA domain DUF815 PF05673.8 gi|433592400|ref|YP_007281896.1| - 0.012 14.5 0.0 0.025 13.5 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF815) Zeta_toxin PF06414.7 gi|433592400|ref|YP_007281896.1| - 0.017 14.2 0.0 0.036 13.1 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin NACHT PF05729.7 gi|433592400|ref|YP_007281896.1| - 0.023 14.3 0.0 0.043 13.4 0.0 1.4 1 0 0 1 1 1 0 NACHT domain ABC_tran PF00005.22 gi|433592400|ref|YP_007281896.1| - 0.029 14.6 0.0 0.1 12.8 0.0 1.9 2 0 0 2 2 1 0 ABC transporter IstB_IS21 PF01695.12 gi|433592400|ref|YP_007281896.1| - 0.033 13.6 0.0 0.067 12.6 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein UbiA PF01040.13 gi|433592400|ref|YP_007281896.1| - 0.036 13.2 0.3 0.054 12.6 0.2 1.2 1 0 0 1 1 1 0 UbiA prenyltransferase family TrwB_AAD_bind PF10412.4 gi|433592400|ref|YP_007281896.1| - 0.042 12.4 0.0 0.069 11.7 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain Parvo_NS1 PF01057.12 gi|433592400|ref|YP_007281896.1| - 0.22 10.3 0.0 0.4 9.4 0.0 1.3 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 AAA_17 PF13207.1 gi|433592400|ref|YP_007281896.1| - 0.4 11.4 3.3 0.68 10.7 0.0 2.7 3 0 0 3 3 2 0 AAA domain CTP_transf_2 PF01467.21 gi|433592401|ref|YP_007281897.1| - 3e-17 63.1 0.1 6.7e-17 61.9 0.0 1.6 1 1 1 2 2 2 1 Cytidylyltransferase Citrate_ly_lig PF08218.6 gi|433592401|ref|YP_007281897.1| - 0.0089 15.4 0.0 0.029 13.8 0.0 1.8 1 1 1 2 2 2 1 Citrate lyase ligase C-terminal domain SAM_adeno_trans PF01887.11 gi|433592402|ref|YP_007281898.1| - 2.1e-73 246.5 0.0 2.4e-73 246.3 0.0 1.0 1 0 0 1 1 1 1 S-adenosyl-l-methionine hydroxide adenosyltransferase Cpn60_TCP1 PF00118.19 gi|433592404|ref|YP_007281900.1| - 5.3e-138 460.6 2.2 6e-138 460.4 1.5 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family Amidohydro_2 PF04909.9 gi|433592405|ref|YP_007281901.1| - 6.5e-14 52.1 0.5 1.2e-13 51.2 0.4 1.4 1 1 0 1 1 1 1 Amidohydrolase GntP_permease PF02447.11 gi|433592406|ref|YP_007281902.1| - 2.6e-99 332.6 34.6 3.2e-99 332.4 24.0 1.0 1 0 0 1 1 1 1 GntP family permease NDUF_B12 PF08122.7 gi|433592406|ref|YP_007281902.1| - 0.18 11.5 3.2 0.5 10.1 0.1 2.9 2 0 0 2 2 2 0 NADH-ubiquinone oxidoreductase B12 subunit family DUF4147 PF13660.1 gi|433592407|ref|YP_007281903.1| - 7.3e-80 267.5 5.6 1.1e-79 266.9 3.9 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4147) MOFRL PF05161.8 gi|433592407|ref|YP_007281903.1| - 8.1e-29 99.8 1.1 2.2e-28 98.4 0.7 1.8 1 0 0 1 1 1 1 MOFRL family DUF456 PF04306.8 gi|433592408|ref|YP_007281904.1| - 0.12 12.4 12.3 0.2 11.7 5.4 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF456) Rick_17kDa_Anti PF05433.10 gi|433592408|ref|YP_007281904.1| - 9.3 6.0 12.8 15 5.3 1.1 3.3 3 0 0 3 3 3 0 Glycine zipper 2TM domain AICARFT_IMPCHas PF01808.13 gi|433592409|ref|YP_007281905.1| - 2e-81 273.5 0.1 7.9e-81 271.5 0.1 1.7 1 1 0 1 1 1 1 AICARFT/IMPCHase bienzyme Formyl_trans_N PF00551.14 gi|433592409|ref|YP_007281905.1| - 9.8e-32 109.9 0.0 3.2e-30 105.0 0.0 2.5 2 1 0 2 2 2 1 Formyl transferase Lyase_1 PF00206.15 gi|433592410|ref|YP_007281906.1| - 4.5e-49 167.3 0.0 6.3e-49 166.8 0.0 1.2 1 0 0 1 1 1 1 Lyase ASL_C PF08328.6 gi|433592410|ref|YP_007281906.1| - 6.1e-41 138.8 0.0 1.2e-40 137.9 0.0 1.5 1 0 0 1 1 1 1 Adenylosuccinate lyase C-terminal EamA PF00892.15 gi|433592411|ref|YP_007281907.1| - 1.4e-08 34.7 12.2 1.7e-08 34.5 8.5 1.1 1 0 0 1 1 1 1 EamA-like transporter family Sugar_transport PF06800.7 gi|433592411|ref|YP_007281907.1| - 0.023 13.8 4.7 0.025 13.6 3.3 1.2 1 0 0 1 1 1 0 Sugar transport protein Acyl_transf_3 PF01757.17 gi|433592411|ref|YP_007281907.1| - 0.062 12.1 6.9 0.074 11.8 4.8 1.1 1 0 0 1 1 1 0 Acyltransferase family TPT PF03151.11 gi|433592411|ref|YP_007281907.1| - 0.56 9.8 8.6 16 5.1 6.0 2.2 1 1 0 1 1 1 0 Triose-phosphate Transporter family NADHdh-2_N PF12155.3 gi|433592411|ref|YP_007281907.1| - 1.7 8.8 6.1 4.4 7.5 0.7 2.5 1 1 1 2 2 2 0 NADH dehydrogenase subunit 2 N-terminal Multi_Drug_Res PF00893.14 gi|433592411|ref|YP_007281907.1| - 1.9 8.9 10.3 1.3 9.5 4.1 2.1 1 1 1 2 2 2 0 Small Multidrug Resistance protein EmrE PF13536.1 gi|433592411|ref|YP_007281907.1| - 3 8.0 18.1 3.8 7.7 8.5 2.2 1 1 1 2 2 2 0 Multidrug resistance efflux transporter EmrE PF13536.1 gi|433592412|ref|YP_007281908.1| - 3.2e-08 33.7 7.4 3.2e-08 33.7 5.1 1.5 1 1 0 1 1 1 1 Multidrug resistance efflux transporter EamA PF00892.15 gi|433592412|ref|YP_007281908.1| - 3.7e-06 26.9 17.7 2e-05 24.6 11.5 1.9 1 1 0 1 1 1 1 EamA-like transporter family Sugar_transport PF06800.7 gi|433592412|ref|YP_007281908.1| - 0.0022 17.1 1.5 0.0024 17.0 1.1 1.1 1 0 0 1 1 1 1 Sugar transport protein UPF0546 PF10639.4 gi|433592412|ref|YP_007281908.1| - 0.38 10.5 8.3 31 4.4 5.7 2.1 1 1 0 1 1 1 0 Uncharacterised protein family UPF0546 Multi_Drug_Res PF00893.14 gi|433592412|ref|YP_007281908.1| - 0.51 10.8 6.7 1.1 9.7 0.8 2.2 2 0 0 2 2 2 0 Small Multidrug Resistance protein 7TMR-DISM_7TM PF07695.6 gi|433592412|ref|YP_007281908.1| - 0.96 9.0 14.7 3.3 7.3 3.9 2.0 1 1 1 2 2 2 0 7TM diverse intracellular signalling Peptidase_M20 PF01546.23 gi|433592414|ref|YP_007281910.1| - 3.7e-26 91.7 0.9 5.2e-26 91.3 0.7 1.2 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|433592414|ref|YP_007281910.1| - 4.3e-16 58.6 0.3 7.3e-16 57.9 0.2 1.4 1 0 0 1 1 1 1 Peptidase dimerisation domain DAP_epimerase PF01678.14 gi|433592415|ref|YP_007281911.1| - 1.2e-38 131.6 0.6 6.3e-20 71.3 0.2 2.1 2 0 0 2 2 2 2 Diaminopimelate epimerase PhzC-PhzF PF02567.11 gi|433592415|ref|YP_007281911.1| - 2.9e-05 23.4 0.0 0.0046 16.2 0.0 2.1 1 1 1 2 2 2 2 Phenazine biosynthesis-like protein Orn_Arg_deC_N PF02784.11 gi|433592416|ref|YP_007281912.1| - 3.6e-45 154.1 0.0 4.7e-45 153.7 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Orn_DAP_Arg_deC PF00278.17 gi|433592416|ref|YP_007281912.1| - 3.3e-19 68.7 0.0 5.6e-19 67.9 0.0 1.3 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Ala_racemase_N PF01168.15 gi|433592416|ref|YP_007281912.1| - 2.5e-08 33.7 0.1 4.5e-08 32.9 0.1 1.4 1 0 0 1 1 1 1 Alanine racemase, N-terminal domain Radical_SAM PF04055.16 gi|433592416|ref|YP_007281912.1| - 0.093 12.9 0.0 0.16 12.1 0.0 1.5 1 0 0 1 1 1 0 Radical SAM superfamily PIN PF01850.16 gi|433592417|ref|YP_007281913.1| - 8.6e-10 38.9 5.6 1e-09 38.7 3.9 1.1 1 0 0 1 1 1 1 PIN domain Antitoxin-MazE PF04014.13 gi|433592418|ref|YP_007281914.1| - 0.0019 17.8 0.7 0.0037 16.9 0.5 1.4 1 0 0 1 1 1 1 Antidote-toxin recognition MazE THDPS_N_2 PF14805.1 gi|433592419|ref|YP_007281915.1| - 7.2e-18 64.2 0.2 1.1e-17 63.6 0.2 1.3 1 0 0 1 1 1 1 Tetrahydrodipicolinate N-succinyltransferase N-terminal Hexapep PF00132.19 gi|433592419|ref|YP_007281915.1| - 1e-12 46.8 8.5 1.8e-05 24.0 0.2 3.3 3 0 0 3 3 3 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|433592419|ref|YP_007281915.1| - 1.8e-07 30.5 12.5 3.1e-06 26.6 0.6 3.3 2 1 0 2 2 2 2 Hexapeptide repeat of succinyl-transferase DapB_C PF05173.9 gi|433592420|ref|YP_007281916.1| - 3.5e-37 127.1 0.1 4.8e-37 126.6 0.1 1.2 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, C-terminus DapB_N PF01113.15 gi|433592420|ref|YP_007281916.1| - 4.4e-25 87.9 0.0 8.6e-25 87.0 0.0 1.5 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Semialdhyde_dh PF01118.19 gi|433592420|ref|YP_007281916.1| - 0.0014 18.8 0.0 0.0031 17.8 0.0 1.5 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain RmlD_sub_bind PF04321.12 gi|433592420|ref|YP_007281916.1| - 0.003 16.4 0.2 0.0062 15.4 0.0 1.6 2 0 0 2 2 2 1 RmlD substrate binding domain ADH_zinc_N PF00107.21 gi|433592420|ref|YP_007281916.1| - 0.0067 15.9 0.3 0.012 15.1 0.2 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase GFO_IDH_MocA PF01408.17 gi|433592420|ref|YP_007281916.1| - 0.0068 16.9 0.1 0.013 15.9 0.1 1.5 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold NAD_binding_10 PF13460.1 gi|433592420|ref|YP_007281916.1| - 0.013 15.4 0.7 0.025 14.5 0.5 1.5 1 1 0 1 1 1 0 NADH(P)-binding NmrA PF05368.8 gi|433592420|ref|YP_007281916.1| - 0.016 14.4 0.0 0.026 13.7 0.0 1.3 1 0 0 1 1 1 0 NmrA-like family NAD_binding_3 PF03447.11 gi|433592420|ref|YP_007281916.1| - 0.061 13.7 0.0 0.14 12.5 0.0 1.6 1 0 0 1 1 1 0 Homoserine dehydrogenase, NAD binding domain DHDPS PF00701.17 gi|433592421|ref|YP_007281917.1| - 1.2e-94 316.1 0.0 1.4e-94 315.9 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family ThiG PF05690.9 gi|433592421|ref|YP_007281917.1| - 0.012 14.6 0.0 0.019 14.0 0.0 1.2 1 0 0 1 1 1 0 Thiazole biosynthesis protein ThiG NMO PF03060.10 gi|433592421|ref|YP_007281917.1| - 0.054 12.6 0.7 0.09 11.9 0.5 1.3 1 0 0 1 1 1 0 Nitronate monooxygenase Hemerythrin PF01814.18 gi|433592421|ref|YP_007281917.1| - 0.067 13.3 1.3 5.3 7.1 0.1 2.8 2 1 0 2 2 2 0 Hemerythrin HHE cation binding domain Peptidase_M48 PF01435.13 gi|433592422|ref|YP_007281918.1| - 2.6e-39 135.0 0.0 3.3e-39 134.7 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.6 gi|433592422|ref|YP_007281918.1| - 1e-07 31.2 0.0 2.3e-07 30.1 0.0 1.5 1 0 0 1 1 1 1 BlaR1 peptidase M56 MgtE PF01769.11 gi|433592422|ref|YP_007281918.1| - 0.0061 16.8 2.3 0.0061 16.8 1.6 1.9 2 0 0 2 2 2 1 Divalent cation transporter SprT-like PF10263.4 gi|433592422|ref|YP_007281918.1| - 0.048 13.3 0.0 0.069 12.8 0.0 1.3 1 0 0 1 1 1 0 SprT-like family Peptidase_MA_2 PF13485.1 gi|433592422|ref|YP_007281918.1| - 0.051 13.6 0.0 0.12 12.3 0.0 1.7 1 0 0 1 1 1 0 Peptidase MA superfamily BSP PF04450.7 gi|433592422|ref|YP_007281918.1| - 0.12 11.7 0.0 0.17 11.2 0.0 1.2 1 0 0 1 1 1 0 Peptidase of plants and bacteria DUF45 PF01863.12 gi|433592422|ref|YP_007281918.1| - 0.14 11.8 0.0 0.2 11.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function DUF45 NYN PF01936.13 gi|433592423|ref|YP_007281919.1| - 1.2e-38 132.6 0.2 1.4e-38 132.4 0.1 1.0 1 0 0 1 1 1 1 NYN domain DUF308 PF03729.8 gi|433592424|ref|YP_007281920.1| - 0.0053 16.7 5.5 0.0063 16.4 3.8 1.1 1 0 0 1 1 1 1 Short repeat of unknown function (DUF308) DUF1469 PF07332.6 gi|433592424|ref|YP_007281920.1| - 0.18 11.5 4.5 0.23 11.2 3.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) TerC PF03741.11 gi|433592424|ref|YP_007281920.1| - 0.21 11.0 1.8 0.21 10.9 1.2 1.0 1 0 0 1 1 1 0 Integral membrane protein TerC family CD20 PF04103.10 gi|433592424|ref|YP_007281920.1| - 0.24 11.3 4.4 0.35 10.8 3.0 1.2 1 0 0 1 1 1 0 CD20-like family Got1 PF04178.7 gi|433592424|ref|YP_007281920.1| - 0.57 10.2 4.3 1 9.4 3.0 1.4 1 1 0 1 1 1 0 Got1/Sft2-like family DUF872 PF05915.7 gi|433592424|ref|YP_007281920.1| - 0.57 10.0 5.4 2.7 7.8 3.8 1.8 1 1 0 1 1 1 0 Eukaryotic protein of unknown function (DUF872) DUF2892 PF11127.3 gi|433592424|ref|YP_007281920.1| - 0.62 9.9 7.4 0.79 9.5 5.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2892) DUF373 PF04123.8 gi|433592424|ref|YP_007281920.1| - 1 8.3 4.1 1.1 8.2 2.8 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF373) DUF3185 PF11381.3 gi|433592424|ref|YP_007281920.1| - 6.7 6.5 10.0 2.2 8.1 0.8 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3185) TGT_C2 PF14810.1 gi|433592425|ref|YP_007281921.1| - 5.4e-25 87.0 0.0 9.8e-25 86.2 0.0 1.4 1 0 0 1 1 1 1 Patch-forming domain C2 of tRNA-guanine transglycosylase PUA PF01472.15 gi|433592425|ref|YP_007281921.1| - 1.3e-19 69.6 0.5 2.2e-19 68.9 0.3 1.4 1 0 0 1 1 1 1 PUA domain HD_3 PF13023.1 gi|433592426|ref|YP_007281922.1| - 9.4e-32 110.0 0.4 1.2e-31 109.6 0.2 1.2 1 0 0 1 1 1 1 HD domain HD PF01966.17 gi|433592426|ref|YP_007281922.1| - 1.7e-08 34.5 0.3 4e-08 33.2 0.2 1.6 1 1 0 1 1 1 1 HD domain HDOD PF08668.7 gi|433592426|ref|YP_007281922.1| - 0.034 13.4 0.0 0.049 12.9 0.0 1.2 1 0 0 1 1 1 0 HDOD domain adh_short PF00106.20 gi|433592427|ref|YP_007281923.1| - 1.9e-23 83.1 0.4 2.4e-23 82.8 0.3 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|433592427|ref|YP_007281923.1| - 1.1e-12 47.9 0.5 1.6e-12 47.4 0.3 1.2 1 0 0 1 1 1 1 KR domain adh_short_C2 PF13561.1 gi|433592427|ref|YP_007281923.1| - 1.2e-06 28.4 0.0 1.5e-06 28.1 0.0 1.2 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase Epimerase PF01370.16 gi|433592427|ref|YP_007281923.1| - 0.00036 20.0 0.2 0.00048 19.6 0.1 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|433592427|ref|YP_007281923.1| - 0.0025 16.5 0.3 0.0033 16.1 0.2 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family MGS PF02142.17 gi|433592427|ref|YP_007281923.1| - 0.081 12.8 0.5 21 5.1 0.2 2.6 3 0 0 3 3 3 0 MGS-like domain RmlD_sub_bind PF04321.12 gi|433592427|ref|YP_007281923.1| - 0.15 10.8 2.0 0.32 9.8 1.4 1.5 1 1 0 1 1 1 0 RmlD substrate binding domain NAC PF01849.13 gi|433592428|ref|YP_007281924.1| - 1.9e-15 56.1 0.2 2.5e-15 55.7 0.1 1.2 1 0 0 1 1 1 1 NAC domain UBA PF00627.26 gi|433592428|ref|YP_007281924.1| - 3.1e-06 26.8 3.9 4.9e-06 26.2 0.1 2.2 2 0 0 2 2 2 1 UBA/TS-N domain UBA_4 PF14555.1 gi|433592428|ref|YP_007281924.1| - 0.00066 19.1 0.5 0.0013 18.2 0.2 1.7 2 0 0 2 2 2 1 UBA-like domain Fucose_iso_N2 PF07882.7 gi|433592428|ref|YP_007281924.1| - 0.035 13.7 0.1 0.045 13.4 0.0 1.2 1 0 0 1 1 1 0 L-fucose isomerase, second N-terminal domain LptC PF06835.8 gi|433592428|ref|YP_007281924.1| - 0.11 11.8 0.0 0.16 11.3 0.0 1.2 1 0 0 1 1 1 0 Lipopolysaccharide-assembly, LptC-related GCD14 PF08704.5 gi|433592429|ref|YP_007281925.1| - 1.8e-13 50.5 0.0 7.1e-11 42.0 0.0 2.1 1 1 1 2 2 2 2 tRNA methyltransferase complex GCD14 subunit Methyltransf_18 PF12847.2 gi|433592429|ref|YP_007281925.1| - 2.9e-13 50.3 0.2 4.8e-13 49.6 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|433592429|ref|YP_007281925.1| - 1.1e-12 47.9 2.4 7.4e-12 45.3 1.6 2.0 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|433592429|ref|YP_007281925.1| - 2.3e-09 37.0 0.0 3e-09 36.6 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|433592429|ref|YP_007281925.1| - 5e-08 32.5 0.2 2.6e-07 30.1 0.1 1.8 1 1 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.8 gi|433592429|ref|YP_007281925.1| - 1.7e-05 24.0 0.4 2.2e-05 23.7 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_23 PF13489.1 gi|433592429|ref|YP_007281925.1| - 3e-05 23.8 0.0 7.7e-05 22.4 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_24 PF13578.1 gi|433592429|ref|YP_007281925.1| - 9.8e-05 23.1 0.2 0.00034 21.4 0.2 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_3 PF01596.12 gi|433592429|ref|YP_007281925.1| - 0.00014 20.9 0.0 0.00019 20.5 0.0 1.1 1 0 0 1 1 1 1 O-methyltransferase PCMT PF01135.14 gi|433592429|ref|YP_007281925.1| - 0.00015 21.3 0.1 0.0002 20.9 0.1 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_11 PF08241.7 gi|433592429|ref|YP_007281925.1| - 0.00018 21.9 0.1 0.00032 21.1 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|433592429|ref|YP_007281925.1| - 0.00029 19.9 0.0 0.00041 19.4 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Phage_sheath_1 PF04984.9 gi|433592429|ref|YP_007281925.1| - 0.0013 17.2 0.1 0.0017 16.9 0.1 1.1 1 0 0 1 1 1 1 Phage tail sheath protein MetW PF07021.7 gi|433592429|ref|YP_007281925.1| - 0.0043 16.4 0.1 0.007 15.7 0.1 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_25 PF13649.1 gi|433592429|ref|YP_007281925.1| - 0.011 16.1 0.0 0.016 15.5 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|433592429|ref|YP_007281925.1| - 0.014 14.7 0.4 0.028 13.7 0.0 1.6 2 0 0 2 2 2 0 Conserved hypothetical protein 95 ADH_zinc_N PF00107.21 gi|433592429|ref|YP_007281925.1| - 0.038 13.5 1.1 0.055 13.0 0.8 1.3 1 0 0 1 1 1 0 Zinc-binding dehydrogenase Methyltransf_12 PF08242.7 gi|433592429|ref|YP_007281925.1| - 0.041 14.3 0.1 0.083 13.3 0.1 1.6 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_15 PF09445.5 gi|433592429|ref|YP_007281925.1| - 0.057 12.9 0.0 0.078 12.5 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase CMAS PF02353.15 gi|433592429|ref|YP_007281925.1| - 0.065 12.3 0.0 0.08 12.0 0.0 1.1 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase 3HCDH_N PF02737.13 gi|433592429|ref|YP_007281925.1| - 0.11 12.1 0.2 0.17 11.5 0.2 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TFIIS_C PF01096.13 gi|433592430|ref|YP_007281926.1| - 9.1e-19 66.8 4.1 9.1e-19 66.8 2.8 2.9 3 0 0 3 3 3 1 Transcription factor S-II (TFIIS) RNA_POL_M_15KD PF02150.11 gi|433592430|ref|YP_007281926.1| - 3.8e-08 32.8 1.3 3.8e-08 32.8 0.9 2.9 3 0 0 3 3 3 1 RNA polymerases M/15 Kd subunit DZR PF12773.2 gi|433592430|ref|YP_007281926.1| - 1.4e-07 31.1 5.4 0.0012 18.5 0.3 2.3 2 0 0 2 2 2 2 Double zinc ribbon Zn_Tnp_IS1595 PF12760.2 gi|433592430|ref|YP_007281926.1| - 3.6e-05 23.4 8.1 0.0071 16.1 1.1 2.7 2 2 0 2 2 2 2 Transposase zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|433592430|ref|YP_007281926.1| - 0.00032 20.2 9.8 0.026 14.1 0.5 2.4 2 1 0 2 2 2 2 Putative transposase DNA-binding domain DUF2387 PF09526.5 gi|433592430|ref|YP_007281926.1| - 0.0005 19.9 6.6 0.053 13.4 1.0 2.4 2 0 0 2 2 2 2 Probable metal-binding protein (DUF2387) TF_Zn_Ribbon PF08271.7 gi|433592430|ref|YP_007281926.1| - 0.00077 18.7 12.6 0.0028 16.9 1.2 3.9 3 2 0 3 3 3 1 TFIIB zinc-binding zf-ribbon_3 PF13248.1 gi|433592430|ref|YP_007281926.1| - 0.00092 18.3 8.2 0.21 10.8 0.1 3.8 4 0 0 4 4 4 1 zinc-ribbon domain FdhE PF04216.7 gi|433592430|ref|YP_007281926.1| - 0.027 14.2 0.4 0.027 14.2 0.3 2.1 2 1 0 2 2 2 0 Protein involved in formate dehydrogenase formation RRN7 PF11781.3 gi|433592430|ref|YP_007281926.1| - 0.028 13.9 11.1 12 5.5 0.1 4.1 3 1 0 3 3 3 0 RNA polymerase I-specific transcription initiation factor Rrn7 Prok-RING_1 PF14446.1 gi|433592430|ref|YP_007281926.1| - 0.054 13.2 7.4 0.64 9.7 0.5 3.1 3 0 0 3 3 3 0 Prokaryotic RING finger family 1 HypA PF01155.14 gi|433592430|ref|YP_007281926.1| - 0.064 12.9 8.7 0.45 10.2 0.5 3.0 1 1 1 3 3 3 0 Hydrogenase expression/synthesis hypA family ArfGap PF01412.13 gi|433592430|ref|YP_007281926.1| - 0.064 13.0 0.3 0.064 13.0 0.2 2.0 2 1 0 2 2 2 0 Putative GTPase activating protein for Arf zf-C4pol PF14260.1 gi|433592430|ref|YP_007281926.1| - 0.12 12.3 3.5 0.35 10.9 0.3 2.5 2 1 0 2 2 2 0 C4-type zinc-finger of DNA polymerase delta zf-UBP PF02148.14 gi|433592430|ref|YP_007281926.1| - 0.25 11.4 5.4 2 8.6 0.3 2.5 2 1 0 2 2 2 0 Zn-finger in ubiquitin-hydrolases and other protein Lar_restr_allev PF14354.1 gi|433592430|ref|YP_007281926.1| - 0.28 11.5 10.0 0.43 10.9 0.4 2.8 2 1 0 2 2 2 0 Restriction alleviation protein Lar Nudix_N_2 PF14803.1 gi|433592430|ref|YP_007281926.1| - 0.33 10.6 12.5 3 7.5 0.0 4.1 3 1 0 3 3 3 0 Nudix N-terminal zinc_ribbon_2 PF13240.1 gi|433592430|ref|YP_007281926.1| - 0.58 9.7 12.9 0.84 9.2 0.1 3.8 3 1 0 3 3 3 0 zinc-ribbon domain Gin PF10764.4 gi|433592430|ref|YP_007281926.1| - 0.6 9.8 6.7 0.53 10.0 0.3 3.0 3 0 0 3 3 3 0 Inhibitor of sigma-G Gin PolC_DP2 PF03833.8 gi|433592430|ref|YP_007281926.1| - 0.7 7.4 6.0 0.42 8.2 0.4 2.0 1 1 1 2 2 2 0 DNA polymerase II large subunit DP2 DUF3797 PF12677.2 gi|433592430|ref|YP_007281926.1| - 0.74 9.4 0.0 0.74 9.4 0.0 2.9 3 1 1 4 4 3 0 Domain of unknown function (DUF3797) zf-ISL3 PF14690.1 gi|433592430|ref|YP_007281926.1| - 0.78 9.8 5.2 2.6 8.1 0.0 3.4 4 0 0 4 4 4 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Ribosomal_L37ae PF01780.14 gi|433592430|ref|YP_007281926.1| - 0.83 9.5 4.9 0.62 9.9 0.2 2.5 1 1 1 2 2 2 0 Ribosomal L37ae protein family PhnA_Zn_Ribbon PF08274.7 gi|433592430|ref|YP_007281926.1| - 1.3 8.8 16.8 3.5 7.5 4.5 3.9 3 1 0 3 3 3 0 PhnA Zinc-Ribbon zf-RING_4 PF14570.1 gi|433592430|ref|YP_007281926.1| - 1.4 8.5 9.8 6 6.5 0.1 3.2 3 0 0 3 3 3 0 RING/Ubox like zinc-binding domain DNA_RNApol_7kD PF03604.8 gi|433592430|ref|YP_007281926.1| - 1.8 8.0 11.7 24 4.5 0.1 3.9 3 1 0 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit UPF0547 PF10571.4 gi|433592430|ref|YP_007281926.1| - 2.2 8.0 14.1 2.7 7.7 0.0 4.0 4 0 0 4 4 4 0 Uncharacterised protein family UPF0547 Zn-ribbon_8 PF09723.5 gi|433592430|ref|YP_007281926.1| - 3.1 7.8 12.6 5.9 6.9 0.0 3.7 3 2 0 3 3 3 0 Zinc ribbon domain Auto_anti-p27 PF06677.7 gi|433592430|ref|YP_007281926.1| - 4.9 6.9 12.0 1.1 9.0 0.8 2.6 3 0 0 3 3 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-IS66 PF13005.2 gi|433592430|ref|YP_007281926.1| - 5.8 6.9 9.9 14 5.7 0.0 3.8 4 0 0 4 4 4 0 zinc-finger binding domain of transposase IS66 zf-UBR PF02207.15 gi|433592430|ref|YP_007281926.1| - 5.8 6.7 7.3 32 4.3 0.1 3.0 2 1 0 2 2 2 0 Putative zinc finger in N-recognin (UBR box) A2L_zn_ribbon PF08792.5 gi|433592430|ref|YP_007281926.1| - 6.1 6.4 15.6 25 4.4 0.2 4.2 3 1 1 4 4 4 0 A2L zinc ribbon domain zf-RING_5 PF14634.1 gi|433592430|ref|YP_007281926.1| - 7.1 6.4 10.5 22 4.8 2.2 3.1 1 1 1 2 2 2 0 zinc-RING finger domain Ogr_Delta PF04606.7 gi|433592430|ref|YP_007281926.1| - 8.5 6.1 11.3 4.9 6.8 2.0 3.0 3 1 0 3 3 3 0 Ogr/Delta-like zinc finger DUF3169 PF11368.3 gi|433592431|ref|YP_007281927.1| - 0.023 13.8 0.5 0.031 13.4 0.3 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3169) PepSY_TM_2 PF13703.1 gi|433592431|ref|YP_007281927.1| - 0.042 14.0 0.1 0.12 12.5 0.0 1.7 2 0 0 2 2 2 0 PepSY-associated TM helix MFS_1 PF07690.11 gi|433592433|ref|YP_007281929.1| - 4.5e-47 160.4 51.3 9.4e-24 83.7 16.3 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|433592433|ref|YP_007281929.1| - 5.1e-09 35.2 26.8 1.3e-07 30.5 1.8 3.6 1 1 2 4 4 4 2 Sugar (and other) transporter LacY_symp PF01306.14 gi|433592433|ref|YP_007281929.1| - 0.046 12.2 7.9 0.029 12.9 1.5 2.2 2 0 0 2 2 2 0 LacY proton/sugar symporter EHN PF06441.7 gi|433592434|ref|YP_007281930.1| - 2.4e-37 127.2 0.0 4.5e-37 126.4 0.0 1.5 1 0 0 1 1 1 1 Epoxide hydrolase N terminus Abhydrolase_6 PF12697.2 gi|433592434|ref|YP_007281930.1| - 3.3e-15 56.6 9.4 3.3e-15 56.6 6.5 2.0 2 1 0 2 2 2 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|433592434|ref|YP_007281930.1| - 3.7e-11 43.0 1.3 8e-11 41.9 0.9 1.8 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_5 PF12695.2 gi|433592434|ref|YP_007281930.1| - 0.00016 21.4 0.1 0.00036 20.3 0.1 1.7 2 0 0 2 2 2 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.3 gi|433592434|ref|YP_007281930.1| - 0.11 12.3 0.0 1.1 9.1 0.0 2.5 2 1 0 2 2 2 0 Putative lysophospholipase PqqD PF05402.7 gi|433592435|ref|YP_007281931.1| - 0.00044 20.2 0.1 0.00091 19.1 0.1 1.7 1 1 0 1 1 1 1 Coenzyme PQQ synthesis protein D (PqqD) NUDIX PF00293.23 gi|433592437|ref|YP_007281933.1| - 1e-17 64.0 0.2 1.3e-17 63.6 0.1 1.1 1 0 0 1 1 1 1 NUDIX domain DUF4186 PF13811.1 gi|433592437|ref|YP_007281933.1| - 0.082 12.6 0.1 9 6.0 0.0 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4186) Ribosomal_S10 PF00338.17 gi|433592438|ref|YP_007281934.1| - 7.4e-16 57.7 0.0 8.3e-16 57.6 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e Peptidase_M20 PF01546.23 gi|433592439|ref|YP_007281935.1| - 2.9e-18 66.0 14.9 2.6e-17 62.9 10.3 2.3 1 1 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|433592439|ref|YP_007281935.1| - 4.2e-12 45.8 0.5 2e-11 43.5 0.3 2.0 2 0 0 2 2 2 1 Peptidase dimerisation domain Peptidase_M48 PF01435.13 gi|433592440|ref|YP_007281936.1| - 1.5e-24 86.8 0.1 3e-24 85.8 0.0 1.5 1 1 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.6 gi|433592440|ref|YP_007281936.1| - 8.7e-07 28.2 0.0 7.5e-05 21.8 0.0 2.4 2 0 0 2 2 2 2 BlaR1 peptidase M56 SprT-like PF10263.4 gi|433592440|ref|YP_007281936.1| - 0.00048 19.8 0.0 0.00078 19.1 0.0 1.2 1 0 0 1 1 1 1 SprT-like family DUF3693 PF12472.3 gi|433592440|ref|YP_007281936.1| - 0.03 13.9 1.2 0.16 11.6 0.2 2.5 1 1 1 2 2 2 0 Phage related protein DUF4131 PF13567.1 gi|433592440|ref|YP_007281936.1| - 1 8.7 12.7 0.48 9.8 0.1 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) DUF4397 PF14344.1 gi|433592441|ref|YP_007281937.1| - 1.7e-51 173.6 13.3 2.2e-36 124.8 3.3 2.1 1 1 1 2 2 2 2 Domain of unknown function (DUF4397) DUF4493 PF14900.1 gi|433592441|ref|YP_007281937.1| - 0.05 13.2 0.6 3.8 7.0 0.1 2.3 2 1 0 2 2 2 0 Domain of unknown function (DUF4493) Y_Y_Y PF07495.8 gi|433592441|ref|YP_007281937.1| - 0.082 12.6 0.0 2.5 7.9 0.0 2.3 2 0 0 2 2 2 0 Y_Y_Y domain DAO PF01266.19 gi|433592442|ref|YP_007281938.1| - 1.9e-13 50.0 3.1 3.3e-06 26.2 0.1 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase Trp_halogenase PF04820.9 gi|433592442|ref|YP_007281938.1| - 2.8e-13 49.3 0.2 1.2e-09 37.3 0.0 2.1 2 0 0 2 2 2 2 Tryptophan halogenase FAD_binding_2 PF00890.19 gi|433592442|ref|YP_007281938.1| - 9.1e-12 44.5 2.5 6.7e-06 25.2 1.1 2.5 2 0 0 2 2 2 2 FAD binding domain FAD_binding_3 PF01494.14 gi|433592442|ref|YP_007281938.1| - 7.7e-10 38.3 1.3 9.7e-09 34.7 0.9 2.1 1 1 0 1 1 1 1 FAD binding domain Pyr_redox PF00070.22 gi|433592442|ref|YP_007281938.1| - 1.5e-08 34.8 2.8 0.0007 19.9 0.2 3.0 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.2 gi|433592442|ref|YP_007281938.1| - 3.7e-08 32.8 7.9 0.00062 18.9 0.7 2.7 3 0 0 3 3 3 2 FAD dependent oxidoreductase GIDA PF01134.17 gi|433592442|ref|YP_007281938.1| - 5e-07 28.9 0.7 1.2e-06 27.6 0.5 1.6 1 1 0 1 1 1 1 Glucose inhibited division protein A NAD_binding_8 PF13450.1 gi|433592442|ref|YP_007281938.1| - 1.2e-06 28.4 0.6 1.2e-06 28.4 0.4 2.5 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.1 gi|433592442|ref|YP_007281938.1| - 1.2e-06 28.7 0.0 2.3e-06 27.7 0.0 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|433592442|ref|YP_007281938.1| - 5.7e-06 25.6 0.6 0.00019 20.6 0.1 2.7 3 0 0 3 3 3 1 Thi4 family HI0933_like PF03486.9 gi|433592442|ref|YP_007281938.1| - 7.8e-06 24.6 0.3 0.00034 19.2 0.1 2.1 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox_2 PF07992.9 gi|433592442|ref|YP_007281938.1| - 1.1e-05 25.3 0.7 2.8e-05 24.1 0.5 1.6 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.13 gi|433592442|ref|YP_007281938.1| - 0.0024 17.5 0.0 0.0037 16.9 0.0 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.11 gi|433592442|ref|YP_007281938.1| - 0.0095 15.3 0.0 0.016 14.6 0.0 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Lycopene_cycl PF05834.7 gi|433592442|ref|YP_007281938.1| - 0.017 14.0 2.1 0.54 9.1 0.1 2.7 3 0 0 3 3 3 0 Lycopene cyclase protein AlaDh_PNT_C PF01262.16 gi|433592442|ref|YP_007281938.1| - 0.042 13.4 0.3 0.081 12.4 0.2 1.4 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain ThiF PF00899.16 gi|433592442|ref|YP_007281938.1| - 0.082 12.7 0.1 0.26 11.0 0.0 1.8 2 0 0 2 2 2 0 ThiF family GMC_oxred_N PF00732.14 gi|433592442|ref|YP_007281938.1| - 0.15 11.1 0.0 1.7 7.7 0.0 2.0 2 0 0 2 2 2 0 GMC oxidoreductase Amino_oxidase PF01593.19 gi|433592442|ref|YP_007281938.1| - 2.4 7.1 7.1 1.4 7.8 0.0 2.6 3 0 0 3 3 3 0 Flavin containing amine oxidoreductase Abhydrolase_5 PF12695.2 gi|433592443|ref|YP_007281939.1| - 3.2e-16 59.3 0.5 7.9e-16 58.1 0.3 1.7 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_6 PF12697.2 gi|433592443|ref|YP_007281939.1| - 2.9e-14 53.5 3.3 6e-14 52.4 2.2 1.7 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|433592443|ref|YP_007281939.1| - 6.1e-07 29.2 0.5 1.8e-06 27.7 0.3 1.7 1 1 0 1 1 1 1 alpha/beta hydrolase fold Peptidase_S9 PF00326.16 gi|433592443|ref|YP_007281939.1| - 8.4e-07 28.4 0.5 4.4e-06 26.0 0.0 2.2 2 0 0 2 2 2 1 Prolyl oligopeptidase family Esterase PF00756.15 gi|433592443|ref|YP_007281939.1| - 4.3e-05 23.0 0.1 0.00011 21.7 0.0 1.6 2 0 0 2 2 2 1 Putative esterase AXE1 PF05448.7 gi|433592443|ref|YP_007281939.1| - 8.1e-05 21.2 0.0 0.095 11.1 0.0 2.2 2 0 0 2 2 2 2 Acetyl xylan esterase (AXE1) BAAT_C PF08840.6 gi|433592443|ref|YP_007281939.1| - 0.00017 21.3 0.0 0.0003 20.5 0.0 1.3 1 0 0 1 1 1 1 BAAT / Acyl-CoA thioester hydrolase C terminal Hydrolase_4 PF12146.3 gi|433592443|ref|YP_007281939.1| - 0.00041 20.1 0.0 0.00092 19.0 0.0 1.5 1 0 0 1 1 1 1 Putative lysophospholipase DUF1100 PF06500.6 gi|433592443|ref|YP_007281939.1| - 0.0078 14.8 0.0 0.013 14.0 0.0 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase of unknown function (DUF1100) DLH PF01738.13 gi|433592443|ref|YP_007281939.1| - 0.017 14.4 0.0 0.41 9.8 0.0 2.3 2 0 0 2 2 2 0 Dienelactone hydrolase family DUF2974 PF11187.3 gi|433592443|ref|YP_007281939.1| - 0.02 14.2 0.0 0.034 13.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2974) Peptidase_S15 PF02129.13 gi|433592443|ref|YP_007281939.1| - 0.075 12.4 0.8 0.42 9.9 0.6 2.0 1 1 0 1 1 1 0 X-Pro dipeptidyl-peptidase (S15 family) DUF2048 PF09752.4 gi|433592443|ref|YP_007281939.1| - 0.27 10.0 0.9 0.53 9.1 0.2 1.6 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2048) Fer2 PF00111.22 gi|433592444|ref|YP_007281940.1| - 4e-10 39.2 4.3 5.1e-10 38.9 3.0 1.2 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_3 PF13085.1 gi|433592444|ref|YP_007281940.1| - 0.022 14.6 0.3 0.024 14.4 0.2 1.2 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain Lactamase_B PF00753.22 gi|433592445|ref|YP_007281941.1| - 2.7e-22 79.3 7.3 4.9e-22 78.5 5.1 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Rhodanese PF00581.15 gi|433592445|ref|YP_007281941.1| - 8.3e-09 35.7 0.0 1.9e-08 34.6 0.0 1.7 1 0 0 1 1 1 1 Rhodanese-like domain Lactamase_B_2 PF12706.2 gi|433592445|ref|YP_007281941.1| - 0.00046 19.7 0.2 0.0017 17.9 0.1 1.9 2 1 0 2 2 2 1 Beta-lactamase superfamily domain DUF1999 PF09390.5 gi|433592446|ref|YP_007281942.1| - 0.015 14.6 0.8 0.015 14.6 0.5 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF1999) LytR_C PF13399.1 gi|433592446|ref|YP_007281942.1| - 1.9 8.8 6.4 2.2 8.7 1.2 2.3 2 0 0 2 2 2 0 LytR cell envelope-related transcriptional attenuator FtsZ_C PF12327.3 gi|433592447|ref|YP_007281943.1| - 9e-37 125.0 2.1 9e-37 125.0 1.5 2.1 2 0 0 2 2 2 1 FtsZ family, C-terminal domain Tubulin PF00091.20 gi|433592447|ref|YP_007281943.1| - 4.9e-36 124.5 0.3 1.2e-35 123.2 0.2 1.6 1 1 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain tRNA_deacylase PF04414.7 gi|433592448|ref|YP_007281944.1| - 1.3e-58 197.6 0.0 1.8e-58 197.1 0.0 1.1 1 0 0 1 1 1 1 D-aminoacyl-tRNA deacylase DDE_Tnp_1 PF01609.16 gi|433592450|ref|YP_007281946.1| - 1.2e-14 54.3 0.0 1.7e-14 53.8 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain PAS_9 PF13426.1 gi|433592451|ref|YP_007281947.1| - 3.5e-52 175.1 0.1 1.1e-18 67.5 0.0 3.6 3 0 0 3 3 3 3 PAS domain PAS_4 PF08448.5 gi|433592451|ref|YP_007281947.1| - 9.4e-41 138.2 17.6 1.1e-16 60.8 0.1 5.0 6 1 0 6 6 6 3 PAS fold PAS PF00989.19 gi|433592451|ref|YP_007281947.1| - 3.8e-35 120.0 1.6 3.5e-13 49.3 0.0 3.9 4 0 0 4 4 4 3 PAS fold PAS_3 PF08447.6 gi|433592451|ref|YP_007281947.1| - 4.1e-28 97.3 0.5 2.7e-10 40.1 0.0 3.5 3 0 0 3 3 3 3 PAS fold HTH_10 PF04967.7 gi|433592451|ref|YP_007281947.1| - 1.1e-16 60.1 0.1 2.5e-16 58.9 0.0 1.7 1 0 0 1 1 1 1 HTH DNA binding domain GAF_2 PF13185.1 gi|433592451|ref|YP_007281947.1| - 2e-14 54.2 3.0 3.8e-14 53.4 0.9 2.5 2 0 0 2 2 2 1 GAF domain GAF_3 PF13492.1 gi|433592451|ref|YP_007281947.1| - 5.7e-09 36.1 0.1 2.9e-08 33.8 0.0 2.3 2 0 0 2 2 2 1 GAF domain PAS_8 PF13188.1 gi|433592451|ref|YP_007281947.1| - 1.1e-08 34.6 1.0 0.0041 16.9 0.0 4.0 4 0 0 4 4 4 2 PAS domain PAS_7 PF12860.2 gi|433592451|ref|YP_007281947.1| - 8.6e-08 32.1 0.1 0.0034 17.3 0.0 3.5 3 1 0 3 3 3 2 PAS fold GAF PF01590.21 gi|433592451|ref|YP_007281947.1| - 2.2e-05 24.6 0.6 0.00011 22.3 0.1 2.4 2 1 0 2 2 2 1 GAF domain HTH_20 PF12840.2 gi|433592451|ref|YP_007281947.1| - 0.00072 19.3 0.1 0.0027 17.4 0.1 2.0 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4 PF04545.11 gi|433592451|ref|YP_007281947.1| - 0.03 13.6 0.4 0.12 11.6 0.0 2.2 2 0 0 2 2 2 0 Sigma-70, region 4 CodY PF06018.9 gi|433592451|ref|YP_007281947.1| - 0.034 13.4 0.0 0.22 10.7 0.0 2.2 3 0 0 3 3 3 0 CodY GAF-like domain GerE PF00196.14 gi|433592451|ref|YP_007281947.1| - 0.05 12.9 0.0 0.47 9.8 0.0 2.3 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family HTH_20 PF12840.2 gi|433592452|ref|YP_007281948.1| - 0.0018 17.9 5.7 0.027 14.2 0.2 3.2 2 1 0 2 2 2 2 Helix-turn-helix domain Regulator_TrmB PF11495.3 gi|433592452|ref|YP_007281948.1| - 0.011 14.6 0.0 0.017 14.0 0.0 1.4 1 0 0 1 1 1 0 Archaeal transcriptional regulator TrmB Na_Ca_ex PF01699.19 gi|433592453|ref|YP_007281949.1| - 9.2e-47 158.1 27.7 1.4e-25 89.5 6.9 2.1 2 0 0 2 2 2 2 Sodium/calcium exchanger protein Shikimate_dh_N PF08501.6 gi|433592454|ref|YP_007281950.1| - 3.6e-26 91.0 0.0 7.8e-26 89.9 0.0 1.6 1 0 0 1 1 1 1 Shikimate dehydrogenase substrate binding domain Shikimate_DH PF01488.15 gi|433592454|ref|YP_007281950.1| - 6.1e-16 58.7 0.0 1.1e-15 57.9 0.0 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase 2-Hacid_dh_C PF02826.14 gi|433592454|ref|YP_007281950.1| - 2.1e-05 23.7 0.1 4e-05 22.8 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Saccharop_dh PF03435.13 gi|433592454|ref|YP_007281950.1| - 2.6e-05 23.3 0.8 4.6e-05 22.5 0.6 1.4 1 0 0 1 1 1 1 Saccharopine dehydrogenase THF_DHG_CYH_C PF02882.14 gi|433592454|ref|YP_007281950.1| - 8.6e-05 21.6 0.0 0.0014 17.7 0.0 2.1 1 1 1 2 2 2 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain F420_oxidored PF03807.12 gi|433592454|ref|YP_007281950.1| - 0.00039 20.8 0.3 0.00072 19.9 0.2 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent IlvN PF07991.7 gi|433592454|ref|YP_007281950.1| - 0.00073 18.9 0.2 0.0012 18.2 0.1 1.3 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain FAD_binding_2 PF00890.19 gi|433592454|ref|YP_007281950.1| - 0.0015 17.4 3.0 0.0022 16.9 2.1 1.4 1 0 0 1 1 1 1 FAD binding domain NAD_binding_10 PF13460.1 gi|433592454|ref|YP_007281950.1| - 0.0016 18.4 4.6 0.0033 17.4 1.9 2.1 2 0 0 2 2 2 1 NADH(P)-binding NAD_binding_2 PF03446.10 gi|433592454|ref|YP_007281950.1| - 0.0029 17.4 0.1 0.0041 16.9 0.0 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase ApbA PF02558.11 gi|433592454|ref|YP_007281950.1| - 0.0045 16.4 0.3 0.0088 15.4 0.2 1.5 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Pyr_redox_2 PF07992.9 gi|433592454|ref|YP_007281950.1| - 0.0051 16.7 0.1 0.007 16.2 0.1 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_7 PF13241.1 gi|433592454|ref|YP_007281950.1| - 0.016 15.4 0.1 0.028 14.6 0.1 1.4 1 0 0 1 1 1 0 Putative NAD(P)-binding 3HCDH_N PF02737.13 gi|433592454|ref|YP_007281950.1| - 0.016 14.8 0.5 0.025 14.2 0.3 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AdoHcyase_NAD PF00670.16 gi|433592454|ref|YP_007281950.1| - 0.019 14.8 0.1 0.03 14.1 0.1 1.2 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain DAO PF01266.19 gi|433592454|ref|YP_007281950.1| - 0.023 13.6 2.1 0.038 12.8 1.4 1.5 1 1 0 1 1 1 0 FAD dependent oxidoreductase GIDA PF01134.17 gi|433592454|ref|YP_007281950.1| - 0.03 13.1 3.0 0.041 12.7 2.1 1.1 1 0 0 1 1 1 0 Glucose inhibited division protein A Malic_M PF03949.10 gi|433592454|ref|YP_007281950.1| - 0.031 13.8 0.7 0.057 12.9 0.4 1.5 1 1 0 1 1 1 0 Malic enzyme, NAD binding domain NAD_Gly3P_dh_N PF01210.18 gi|433592454|ref|YP_007281950.1| - 0.043 13.5 1.6 0.049 13.3 0.2 1.9 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus PfkB PF00294.19 gi|433592454|ref|YP_007281950.1| - 0.056 12.5 1.2 0.089 11.9 0.5 1.6 2 0 0 2 2 2 0 pfkB family carbohydrate kinase TrkA_N PF02254.13 gi|433592454|ref|YP_007281950.1| - 0.077 13.0 0.1 0.13 12.2 0.1 1.5 1 0 0 1 1 1 0 TrkA-N domain ThiF PF00899.16 gi|433592454|ref|YP_007281950.1| - 0.61 9.9 3.2 0.6 9.9 1.1 1.8 2 1 0 2 2 2 0 ThiF family HHH_5 PF14520.1 gi|433592455|ref|YP_007281951.1| - 2.4e-07 30.7 1.1 6.1e-07 29.5 0.8 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix domain DUF4332 PF14229.1 gi|433592455|ref|YP_007281951.1| - 0.00012 22.0 0.0 0.00053 19.9 0.0 1.8 1 1 1 2 2 2 1 Domain of unknown function (DUF4332) Cdd1 PF11731.3 gi|433592455|ref|YP_007281951.1| - 0.077 12.9 0.0 0.12 12.3 0.0 1.3 1 0 0 1 1 1 0 Pathogenicity locus DNA_pol_lambd_f PF10391.4 gi|433592455|ref|YP_007281951.1| - 0.15 11.6 0.0 0.24 10.9 0.0 1.3 1 0 0 1 1 1 0 Fingers domain of DNA polymerase lambda Chorismate_bind PF00425.13 gi|433592456|ref|YP_007281952.1| - 1.4e-100 335.8 0.0 2.8e-100 334.8 0.0 1.5 2 0 0 2 2 2 1 chorismate binding enzyme Anth_synt_I_N PF04715.8 gi|433592456|ref|YP_007281952.1| - 1.2e-15 57.7 0.1 1.1e-14 54.5 0.0 2.4 3 0 0 3 3 3 1 Anthranilate synthase component I, N terminal region GATase PF00117.23 gi|433592457|ref|YP_007281953.1| - 6.8e-42 143.0 0.0 2e-41 141.5 0.0 1.6 1 1 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|433592457|ref|YP_007281953.1| - 1.8e-09 37.3 0.0 3.6e-09 36.3 0.0 1.5 1 1 0 1 1 1 1 Peptidase C26 A2L_zn_ribbon PF08792.5 gi|433592459|ref|YP_007281955.1| - 0.22 11.0 1.0 0.36 10.3 0.7 1.4 1 1 0 1 1 1 0 A2L zinc ribbon domain DNA_RNApol_7kD PF03604.8 gi|433592459|ref|YP_007281955.1| - 0.63 9.5 2.4 0.95 8.9 1.7 1.3 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit Auto_anti-p27 PF06677.7 gi|433592459|ref|YP_007281955.1| - 1.5 8.6 3.6 3.2 7.5 2.5 1.6 1 1 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Aminotran_4 PF01063.14 gi|433592460|ref|YP_007281956.1| - 4.3e-44 150.7 0.0 5.5e-44 150.3 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class IV Saccharop_dh PF03435.13 gi|433592462|ref|YP_007281958.1| - 3.3e-22 79.0 0.0 5.7e-22 78.2 0.0 1.5 1 1 0 1 1 1 1 Saccharopine dehydrogenase NAD_binding_10 PF13460.1 gi|433592462|ref|YP_007281958.1| - 2.9e-08 33.9 0.5 1.6e-07 31.4 0.0 2.0 2 0 0 2 2 2 1 NADH(P)-binding Epimerase PF01370.16 gi|433592462|ref|YP_007281958.1| - 0.03 13.7 0.0 0.081 12.3 0.0 1.6 2 0 0 2 2 2 0 NAD dependent epimerase/dehydratase family adh_short PF00106.20 gi|433592462|ref|YP_007281958.1| - 0.031 14.1 0.3 0.031 14.1 0.2 2.1 2 0 0 2 2 2 0 short chain dehydrogenase Rieske PF00355.21 gi|433592463|ref|YP_007281959.1| - 6.4e-07 28.8 0.1 8.5e-07 28.4 0.0 1.3 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain HTH_20 PF12840.2 gi|433592464|ref|YP_007281960.1| - 0.024 14.4 2.7 3.3 7.5 1.4 3.0 1 1 1 2 2 2 0 Helix-turn-helix domain HTH_20 PF12840.2 gi|433592465|ref|YP_007281961.1| - 0.0052 16.5 0.1 0.0083 15.9 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|433592465|ref|YP_007281961.1| - 0.12 12.0 0.0 0.17 11.5 0.0 1.3 1 0 0 1 1 1 0 MarR family zf-trcl PF13451.1 gi|433592465|ref|YP_007281961.1| - 0.33 10.6 5.7 0.73 9.5 0.2 2.2 1 1 1 2 2 2 0 Probable zinc-binding domain Zn-ribbon_8 PF09723.5 gi|433592465|ref|YP_007281961.1| - 1.3 9.0 5.2 3.2 7.7 2.6 2.3 1 1 1 2 2 2 0 Zinc ribbon domain NTP_transferase PF00483.18 gi|433592466|ref|YP_007281962.1| - 4.1e-36 124.5 0.0 5.4e-36 124.1 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|433592466|ref|YP_007281962.1| - 1.1e-12 48.3 0.0 1.5e-12 47.9 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.19 gi|433592466|ref|YP_007281962.1| - 0.0036 16.7 0.2 0.25 10.9 0.0 2.6 2 0 0 2 2 2 1 Bacterial transferase hexapeptide (six repeats) IspD PF01128.14 gi|433592466|ref|YP_007281962.1| - 0.028 13.9 0.0 0.046 13.2 0.0 1.3 1 0 0 1 1 1 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase TAT_signal PF10518.4 gi|433592468|ref|YP_007281964.1| - 0.0059 16.5 2.6 0.011 15.6 1.8 1.4 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence ATP_bind_4 PF01902.12 gi|433592469|ref|YP_007281965.1| - 3.8e-60 202.9 0.0 6.6e-60 202.1 0.0 1.4 1 1 0 1 1 1 1 ATP-binding region DUF373 PF04123.8 gi|433592470|ref|YP_007281966.1| - 3.3e-111 371.6 8.0 4.1e-111 371.3 5.6 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF373) Peptidase_S49 PF01343.13 gi|433592471|ref|YP_007281967.1| - 4.2e-40 137.0 0.0 2.5e-39 134.5 0.0 1.9 2 0 0 2 2 2 1 Peptidase family S49 SDH_sah PF01972.11 gi|433592471|ref|YP_007281967.1| - 0.025 13.3 0.0 0.038 12.7 0.0 1.2 1 0 0 1 1 1 0 Serine dehydrogenase proteinase CLP_protease PF00574.18 gi|433592471|ref|YP_007281967.1| - 0.12 11.9 0.0 0.34 10.5 0.0 1.7 2 0 0 2 2 2 0 Clp protease Phytase PF02333.10 gi|433592472|ref|YP_007281968.1| - 0.0028 16.4 0.0 0.0033 16.2 0.0 1.1 1 0 0 1 1 1 1 Phytase Gly-zipper_OmpA PF13436.1 gi|433592472|ref|YP_007281968.1| - 2.5 7.8 9.3 29 4.3 5.1 2.4 2 0 0 2 2 2 0 Glycine-zipper containing OmpA-like membrane domain DUF3482 PF11981.3 gi|433592472|ref|YP_007281968.1| - 4.9 6.2 5.9 50 2.9 4.5 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF3482) TauE PF01925.14 gi|433592473|ref|YP_007281969.1| - 0.0001 21.8 5.4 0.00012 21.6 3.8 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE DUF1212 PF06738.7 gi|433592473|ref|YP_007281969.1| - 0.069 12.6 1.5 0.097 12.1 0.7 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1212) DUF4131 PF13567.1 gi|433592473|ref|YP_007281969.1| - 0.14 11.5 0.5 0.2 11.0 0.4 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) CoA_binding_3 PF13727.1 gi|433592473|ref|YP_007281969.1| - 0.51 10.1 2.6 0.73 9.6 1.4 1.5 1 1 1 2 2 2 0 CoA-binding domain DDE_Tnp_1 PF01609.16 gi|433592474|ref|YP_007281970.1| - 9.4e-11 41.6 2.7 1.7e-10 40.8 1.9 1.4 1 0 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.6 gi|433592474|ref|YP_007281970.1| - 0.021 14.7 0.1 0.061 13.2 0.1 1.8 1 0 0 1 1 1 0 Transposase domain (DUF772) DDE_Tnp_1_assoc PF13808.1 gi|433592474|ref|YP_007281970.1| - 0.09 12.4 0.2 0.18 11.5 0.1 1.6 1 0 0 1 1 1 0 DDE_Tnp_1-associated Reo_sigmaC PF04582.7 gi|433592475|ref|YP_007281971.1| - 0.26 10.4 6.9 0.28 10.3 1.2 2.1 1 1 1 2 2 2 0 Reovirus sigma C capsid protein AATF-Che1 PF13339.1 gi|433592475|ref|YP_007281971.1| - 0.66 10.1 41.5 0.12 12.4 6.5 3.3 1 1 2 3 3 3 0 Apoptosis antagonizing transcription factor Laminin_II PF06009.7 gi|433592475|ref|YP_007281971.1| - 4.4 7.0 33.8 1.1 9.0 7.3 4.0 1 1 3 4 4 4 0 Laminin Domain II Glyco_hydro_2 PF00703.16 gi|433592476|ref|YP_007281972.1| - 1.5e-05 25.3 0.0 3.6e-05 24.1 0.0 1.6 2 0 0 2 2 2 1 Glycosyl hydrolases family 2 Glyco_hydro_2_N PF02837.13 gi|433592476|ref|YP_007281972.1| - 4.9e-05 22.9 0.0 7.3e-05 22.3 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolases family 2, sugar binding domain Tubulin PF00091.20 gi|433592477|ref|YP_007281973.1| - 2.8e-23 82.8 0.5 1.9e-22 80.1 0.2 2.3 2 1 0 2 2 2 1 Tubulin/FtsZ family, GTPase domain Tubulin_2 PF13809.1 gi|433592477|ref|YP_007281973.1| - 0.00035 19.6 0.3 0.00035 19.6 0.2 2.1 3 0 0 3 3 3 1 Tubulin like Oxidored_molyb PF00174.14 gi|433592479|ref|YP_007281975.1| - 6.7e-44 149.2 0.1 1e-43 148.6 0.1 1.2 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain Mo-co_dimer PF03404.11 gi|433592479|ref|YP_007281975.1| - 5.9e-17 61.5 0.1 1.1e-16 60.6 0.1 1.5 1 0 0 1 1 1 1 Mo-co oxidoreductase dimerisation domain NAD_binding_10 PF13460.1 gi|433592480|ref|YP_007281976.1| - 3.9e-17 62.8 0.1 5.2e-17 62.4 0.1 1.2 1 0 0 1 1 1 1 NADH(P)-binding Epimerase PF01370.16 gi|433592480|ref|YP_007281976.1| - 3e-13 49.7 0.0 5.7e-13 48.8 0.0 1.4 2 0 0 2 2 2 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|433592480|ref|YP_007281976.1| - 1.2e-09 37.2 0.0 5.4e-08 31.8 0.0 2.1 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family TrkA_N PF02254.13 gi|433592480|ref|YP_007281976.1| - 1.4e-07 31.5 0.2 2.5e-07 30.7 0.1 1.4 1 0 0 1 1 1 1 TrkA-N domain F420_oxidored PF03807.12 gi|433592480|ref|YP_007281976.1| - 2.2e-05 24.7 0.2 6.9e-05 23.1 0.1 1.8 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent UDPG_MGDP_dh_N PF03721.9 gi|433592480|ref|YP_007281976.1| - 8.3e-05 22.0 0.0 0.00015 21.2 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ApbA PF02558.11 gi|433592480|ref|YP_007281976.1| - 0.00022 20.7 0.1 0.00037 19.9 0.1 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA DUF1731 PF08338.6 gi|433592480|ref|YP_007281976.1| - 0.00061 19.2 0.0 0.002 17.5 0.0 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF1731) RmlD_sub_bind PF04321.12 gi|433592480|ref|YP_007281976.1| - 0.00065 18.6 0.0 0.0019 17.1 0.0 1.8 1 1 0 1 1 1 1 RmlD substrate binding domain NAD_binding_2 PF03446.10 gi|433592480|ref|YP_007281976.1| - 0.01 15.6 0.0 0.022 14.6 0.0 1.6 2 0 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase adh_short PF00106.20 gi|433592480|ref|YP_007281976.1| - 0.048 13.5 0.8 0.22 11.4 0.6 2.0 1 1 0 1 1 1 0 short chain dehydrogenase GFO_IDH_MocA PF01408.17 gi|433592480|ref|YP_007281976.1| - 0.067 13.7 0.2 0.17 12.3 0.1 1.7 2 0 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold NAD_Gly3P_dh_N PF01210.18 gi|433592480|ref|YP_007281976.1| - 0.092 12.4 0.0 0.17 11.6 0.0 1.5 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 2-Hacid_dh_C PF02826.14 gi|433592480|ref|YP_007281976.1| - 0.18 10.9 0.0 0.37 9.9 0.0 1.6 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DHH PF01368.15 gi|433592481|ref|YP_007281977.1| - 1.8e-14 53.5 0.0 2.5e-14 53.1 0.0 1.2 1 0 0 1 1 1 1 DHH family DHHA1 PF02272.14 gi|433592481|ref|YP_007281977.1| - 3.1e-10 39.6 0.3 6.4e-10 38.5 0.2 1.6 1 0 0 1 1 1 1 DHHA1 domain PfkB PF00294.19 gi|433592482|ref|YP_007281978.1| - 5.3e-11 42.1 4.0 3.3e-09 36.2 1.9 2.3 2 1 0 2 2 2 2 pfkB family carbohydrate kinase STAS_2 PF13466.1 gi|433592482|ref|YP_007281978.1| - 0.0019 18.1 0.1 0.0019 18.1 0.1 2.6 3 0 0 3 3 3 1 STAS domain Phos_pyr_kin PF08543.7 gi|433592482|ref|YP_007281978.1| - 0.064 12.4 0.1 0.094 11.8 0.1 1.3 1 0 0 1 1 1 0 Phosphomethylpyrimidine kinase PhnA_Zn_Ribbon PF08274.7 gi|433592483|ref|YP_007281979.1| - 0.0014 18.4 1.7 0.015 15.0 0.1 2.2 2 0 0 2 2 2 1 PhnA Zinc-Ribbon zf-CHY PF05495.7 gi|433592483|ref|YP_007281979.1| - 0.0071 16.4 0.1 0.0084 16.2 0.1 1.1 1 0 0 1 1 1 1 CHY zinc finger Nudix_N_2 PF14803.1 gi|433592483|ref|YP_007281979.1| - 0.016 14.9 1.1 0.18 11.5 0.1 2.1 2 0 0 2 2 2 0 Nudix N-terminal FYVE PF01363.16 gi|433592483|ref|YP_007281979.1| - 0.02 14.7 0.2 0.025 14.4 0.2 1.2 1 0 0 1 1 1 0 FYVE zinc finger NinF PF05810.7 gi|433592483|ref|YP_007281979.1| - 0.051 13.3 0.2 0.088 12.6 0.2 1.4 1 1 0 1 1 1 0 NinF protein zinc-ribbons_6 PF07191.7 gi|433592483|ref|YP_007281979.1| - 0.063 13.0 1.3 0.93 9.3 0.9 2.0 1 1 0 1 1 1 0 zinc-ribbons A2L_zn_ribbon PF08792.5 gi|433592483|ref|YP_007281979.1| - 0.075 12.5 2.0 0.78 9.2 0.2 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain DZR PF12773.2 gi|433592483|ref|YP_007281979.1| - 0.098 12.4 1.8 0.16 11.7 1.2 1.4 1 1 0 1 1 1 0 Double zinc ribbon Gin PF10764.4 gi|433592483|ref|YP_007281979.1| - 0.16 11.7 2.8 0.71 9.6 0.1 2.1 1 1 1 2 2 2 0 Inhibitor of sigma-G Gin zf-RING_3 PF14369.1 gi|433592483|ref|YP_007281979.1| - 0.48 10.4 2.3 0.8 9.7 1.6 1.4 1 1 0 1 1 1 0 zinc-finger XPA_N PF01286.13 gi|433592483|ref|YP_007281979.1| - 1 9.1 3.7 3.6 7.3 0.2 2.3 2 0 0 2 2 2 0 XPA protein N-terminal zf-HYPF PF07503.7 gi|433592483|ref|YP_007281979.1| - 1.4 8.3 4.1 3.2 7.2 0.2 2.2 2 0 0 2 2 2 0 HypF finger UPF0547 PF10571.4 gi|433592483|ref|YP_007281979.1| - 1.7 8.3 4.3 1.7 8.3 0.3 2.0 1 1 1 2 2 2 0 Uncharacterised protein family UPF0547 NUDIX PF00293.23 gi|433592486|ref|YP_007281982.1| - 5.4e-18 64.9 0.1 7.6e-18 64.4 0.1 1.1 1 0 0 1 1 1 1 NUDIX domain DNA_binding_1 PF01035.15 gi|433592487|ref|YP_007281983.1| - 1e-07 31.6 0.0 1.8e-07 30.8 0.0 1.4 1 1 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain zf-ISL3 PF14690.1 gi|433592488|ref|YP_007281984.1| - 0.0013 18.7 0.1 0.52 10.3 0.0 2.1 2 0 0 2 2 2 2 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zinc_ribbon_2 PF13240.1 gi|433592488|ref|YP_007281984.1| - 0.0041 16.5 2.4 0.91 9.0 0.0 2.4 2 0 0 2 2 2 2 zinc-ribbon domain Nudix_N_2 PF14803.1 gi|433592488|ref|YP_007281984.1| - 0.01 15.5 2.6 1.6 8.5 0.1 2.3 2 0 0 2 2 2 0 Nudix N-terminal A2L_zn_ribbon PF08792.5 gi|433592488|ref|YP_007281984.1| - 0.011 15.1 0.3 0.66 9.5 0.0 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain zf-ribbon_3 PF13248.1 gi|433592488|ref|YP_007281984.1| - 0.015 14.5 2.8 2.2 7.6 0.0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain YhfH PF14149.1 gi|433592488|ref|YP_007281984.1| - 0.016 14.9 2.5 0.23 11.2 0.0 2.2 2 0 0 2 2 2 0 YhfH-like protein Zn-ribbon_8 PF09723.5 gi|433592488|ref|YP_007281984.1| - 0.019 14.9 1.5 3.8 7.5 0.1 2.2 2 0 0 2 2 2 0 Zinc ribbon domain HypA PF01155.14 gi|433592488|ref|YP_007281984.1| - 0.024 14.3 0.2 0.029 14.0 0.2 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family TerY-C PF15616.1 gi|433592488|ref|YP_007281984.1| - 0.029 14.2 0.8 0.059 13.3 0.6 1.5 1 1 0 1 1 1 0 TerY-C metal binding domain zf-IS66 PF13005.2 gi|433592488|ref|YP_007281984.1| - 0.047 13.6 2.0 3.4 7.7 0.2 2.2 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 PhnA_Zn_Ribbon PF08274.7 gi|433592488|ref|YP_007281984.1| - 0.047 13.4 0.1 0.18 11.5 0.1 1.9 1 1 0 1 1 1 0 PhnA Zinc-Ribbon Ogr_Delta PF04606.7 gi|433592488|ref|YP_007281984.1| - 0.057 13.0 0.5 1.5 8.5 0.0 2.1 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger DZR PF12773.2 gi|433592488|ref|YP_007281984.1| - 0.057 13.2 1.8 0.21 11.4 1.3 1.8 1 1 0 1 1 1 0 Double zinc ribbon zf-NADH-PPase PF09297.6 gi|433592488|ref|YP_007281984.1| - 0.082 12.4 7.6 0.16 11.5 0.5 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain TF_Zn_Ribbon PF08271.7 gi|433592488|ref|YP_007281984.1| - 0.096 12.0 0.9 7.3 5.9 0.1 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding CpXC PF14353.1 gi|433592488|ref|YP_007281984.1| - 0.17 11.8 1.2 2.4 8.1 0.9 2.0 1 1 0 1 1 1 0 CpXC protein Sgf11 PF08209.6 gi|433592488|ref|YP_007281984.1| - 0.27 10.5 2.8 5 6.5 0.3 2.2 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) OrfB_Zn_ribbon PF07282.6 gi|433592488|ref|YP_007281984.1| - 0.41 10.3 3.1 2.8 7.6 2.1 1.9 1 1 0 1 1 1 0 Putative transposase DNA-binding domain DUF983 PF06170.7 gi|433592488|ref|YP_007281984.1| - 0.51 10.4 2.2 15 5.8 0.2 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF983) zf-TFIIB PF13453.1 gi|433592488|ref|YP_007281984.1| - 0.51 9.5 3.1 1.4 8.2 2.1 1.7 1 1 0 1 1 1 0 Transcription factor zinc-finger DUF1610 PF07754.6 gi|433592488|ref|YP_007281984.1| - 1.3 9.1 6.1 2.1 8.5 0.5 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) Zn_Tnp_IS1595 PF12760.2 gi|433592488|ref|YP_007281984.1| - 2.3 8.1 5.4 16 5.3 0.4 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zf-RING_3 PF14369.1 gi|433592488|ref|YP_007281984.1| - 7.8 6.5 6.3 45 4.1 0.6 2.2 1 1 1 2 2 2 0 zinc-finger IGPS PF00218.16 gi|433592489|ref|YP_007281985.1| - 6.9e-64 215.3 0.0 1.1e-63 214.6 0.0 1.3 1 1 0 1 1 1 1 Indole-3-glycerol phosphate synthase His_biosynth PF00977.16 gi|433592489|ref|YP_007281985.1| - 0.00023 20.5 0.0 0.0096 15.2 0.0 2.5 2 1 1 3 3 3 1 Histidine biosynthesis protein FMN_dh PF01070.13 gi|433592489|ref|YP_007281985.1| - 0.00047 19.1 1.1 0.0011 17.8 0.4 1.7 2 0 0 2 2 2 1 FMN-dependent dehydrogenase NanE PF04131.9 gi|433592489|ref|YP_007281985.1| - 0.0011 18.0 1.2 0.012 14.5 0.0 2.8 2 1 1 3 3 3 1 Putative N-acetylmannosamine-6-phosphate epimerase PcrB PF01884.12 gi|433592489|ref|YP_007281985.1| - 0.0025 17.0 0.0 0.0053 16.0 0.0 1.5 1 0 0 1 1 1 1 PcrB family QRPTase_C PF01729.14 gi|433592489|ref|YP_007281985.1| - 0.014 14.9 0.2 0.1 12.0 0.1 2.3 2 1 0 2 2 2 0 Quinolinate phosphoribosyl transferase, C-terminal domain Trp_syntA PF00290.15 gi|433592489|ref|YP_007281985.1| - 0.018 13.5 0.0 0.032 12.7 0.0 1.4 1 0 0 1 1 1 0 Tryptophan synthase alpha chain ThiG PF05690.9 gi|433592489|ref|YP_007281985.1| - 0.043 12.8 3.5 0.065 12.2 0.1 2.4 3 0 0 3 3 3 0 Thiazole biosynthesis protein ThiG DHO_dh PF01180.16 gi|433592489|ref|YP_007281985.1| - 0.099 11.5 0.1 0.19 10.6 0.1 1.4 1 0 0 1 1 1 0 Dihydroorotate dehydrogenase PALP PF00291.20 gi|433592490|ref|YP_007281986.1| - 3.6e-38 131.5 0.4 7.3e-38 130.5 0.3 1.4 1 1 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Trp_syntA PF00290.15 gi|433592491|ref|YP_007281987.1| - 4.3e-87 290.9 0.0 4.9e-87 290.7 0.0 1.0 1 0 0 1 1 1 1 Tryptophan synthase alpha chain His_biosynth PF00977.16 gi|433592491|ref|YP_007281987.1| - 0.00042 19.6 0.0 0.00087 18.6 0.0 1.4 2 0 0 2 2 2 1 Histidine biosynthesis protein PcrB PF01884.12 gi|433592491|ref|YP_007281987.1| - 0.00048 19.4 1.3 0.00075 18.8 0.4 1.7 2 1 0 2 2 2 1 PcrB family PA PF02225.17 gi|433592491|ref|YP_007281987.1| - 0.00057 19.5 0.4 0.16 11.6 0.0 2.3 2 0 0 2 2 2 2 PA domain ThiG PF05690.9 gi|433592491|ref|YP_007281987.1| - 0.0043 16.1 0.2 0.0067 15.5 0.2 1.2 1 0 0 1 1 1 1 Thiazole biosynthesis protein ThiG Jag_N PF14804.1 gi|433592491|ref|YP_007281987.1| - 0.092 12.7 0.1 1 9.4 0.0 2.5 2 0 0 2 2 2 0 Jag N-terminus PucR PF07905.6 gi|433592491|ref|YP_007281987.1| - 0.094 12.2 0.1 0.43 10.1 0.0 2.1 3 0 0 3 3 3 0 Purine catabolism regulatory protein-like family PEP_mutase PF13714.1 gi|433592491|ref|YP_007281987.1| - 0.11 11.7 1.0 0.66 9.1 0.2 2.5 2 1 0 2 2 2 0 Phosphoenolpyruvate phosphomutase DeoC PF01791.4 gi|433592492|ref|YP_007281988.1| - 6.3e-43 146.7 0.0 7.4e-43 146.5 0.0 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase AP_endonuc_2 PF01261.19 gi|433592492|ref|YP_007281988.1| - 0.0004 19.7 0.0 0.00083 18.7 0.0 1.6 1 1 0 1 1 1 1 Xylose isomerase-like TIM barrel Glyco_hydro_97 PF10566.4 gi|433592492|ref|YP_007281988.1| - 0.021 13.9 0.0 0.026 13.6 0.0 1.1 1 0 0 1 1 1 0 Glycoside hydrolase 97 OMPdecase PF00215.19 gi|433592492|ref|YP_007281988.1| - 0.035 13.4 0.3 0.11 11.8 0.1 2.0 1 1 0 1 1 1 0 Orotidine 5'-phosphate decarboxylase / HUMPS family Cation_efflux PF01545.16 gi|433592493|ref|YP_007281989.1| - 2.7e-60 203.8 7.8 3e-60 203.7 5.4 1.0 1 0 0 1 1 1 1 Cation efflux family DUF867 PF05908.6 gi|433592494|ref|YP_007281990.1| - 1.4e-15 56.8 0.0 1.8e-15 56.5 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF867) NUP PF06516.6 gi|433592495|ref|YP_007281991.1| - 3.2e-47 160.8 0.0 4.7e-47 160.3 0.0 1.1 1 0 0 1 1 1 1 Purine nucleoside permease (NUP) PNP_UDP_1 PF01048.15 gi|433592495|ref|YP_007281991.1| - 3.8e-17 62.0 2.1 4.8e-17 61.7 1.4 1.1 1 0 0 1 1 1 1 Phosphorylase superfamily SprT-like PF10263.4 gi|433592496|ref|YP_007281992.1| - 4e-19 68.8 1.3 4.8e-19 68.5 0.9 1.1 1 0 0 1 1 1 1 SprT-like family DUF4157 PF13699.1 gi|433592496|ref|YP_007281992.1| - 0.0051 16.9 0.3 0.011 15.8 0.1 1.7 1 1 0 1 1 1 1 Domain of unknown function (DUF4157) Peptidase_MA_2 PF13485.1 gi|433592496|ref|YP_007281992.1| - 0.038 14.0 0.2 0.062 13.3 0.1 1.3 1 0 0 1 1 1 0 Peptidase MA superfamily BSP PF04450.7 gi|433592496|ref|YP_007281992.1| - 0.057 12.8 0.0 0.081 12.3 0.0 1.3 1 0 0 1 1 1 0 Peptidase of plants and bacteria HAD_2 PF13419.1 gi|433592498|ref|YP_007281994.1| - 1.1e-27 97.4 0.1 1.2e-27 97.2 0.1 1.0 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|433592498|ref|YP_007281994.1| - 1.1e-11 45.5 2.0 4.1e-10 40.4 1.4 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|433592498|ref|YP_007281994.1| - 2e-11 43.4 0.1 4.6e-11 42.2 0.1 1.7 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.2 gi|433592498|ref|YP_007281994.1| - 0.00043 20.4 0.0 0.00053 20.2 0.0 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase NIF PF03031.13 gi|433592498|ref|YP_007281994.1| - 0.0017 18.0 0.0 0.072 12.7 0.0 2.1 1 1 0 1 1 1 1 NLI interacting factor-like phosphatase PGP_phosphatase PF09419.5 gi|433592498|ref|YP_007281994.1| - 0.14 11.4 0.0 0.75 9.1 0.0 2.0 2 0 0 2 2 2 0 Mitochondrial PGP phosphatase DHQS PF01959.11 gi|433592501|ref|YP_007281997.1| - 4.4e-148 492.7 5.8 5.2e-148 492.4 4.0 1.1 1 0 0 1 1 1 1 3-dehydroquinate synthase (EC 4.6.1.3) Hint PF01079.15 gi|433592501|ref|YP_007281997.1| - 0.00015 21.0 0.0 0.005 16.0 0.0 2.5 2 0 0 2 2 2 1 Hint module QRPTase_C PF01729.14 gi|433592501|ref|YP_007281997.1| - 0.00099 18.6 1.5 0.094 12.2 0.1 2.6 2 0 0 2 2 2 2 Quinolinate phosphoribosyl transferase, C-terminal domain Hint_2 PF13403.1 gi|433592501|ref|YP_007281997.1| - 0.0091 15.9 2.1 4.2 7.2 0.0 3.5 4 0 0 4 4 4 2 Hint domain PUA PF01472.15 gi|433592501|ref|YP_007281997.1| - 0.045 13.4 0.3 1.9 8.2 0.1 3.2 3 0 0 3 3 3 0 PUA domain Complex1_51K PF01512.12 gi|433592502|ref|YP_007281998.1| - 3.2e-24 85.3 0.0 4.5e-24 84.8 0.0 1.2 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase 51 Kd subunit RnfC_N PF13375.1 gi|433592502|ref|YP_007281998.1| - 2.3e-09 36.8 0.0 4.7e-09 35.8 0.0 1.5 1 0 0 1 1 1 1 RnfC Barrel sandwich hybrid domain SLBB PF10531.4 gi|433592502|ref|YP_007281998.1| - 0.00041 20.1 0.0 0.0015 18.3 0.0 2.1 1 0 0 1 1 1 1 SLBB domain CbiG_mid PF11761.3 gi|433592502|ref|YP_007281998.1| - 0.019 15.2 0.0 0.038 14.2 0.0 1.6 1 0 0 1 1 1 0 Cobalamin biosynthesis central region zf-ribbon_3 PF13248.1 gi|433592504|ref|YP_007282000.1| - 5.3e-07 28.6 0.6 7.6e-07 28.1 0.4 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|433592504|ref|YP_007282000.1| - 5.5e-05 22.9 1.6 7.9e-05 22.3 1.1 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|433592504|ref|YP_007282000.1| - 0.00021 20.6 0.7 0.00029 20.2 0.5 1.2 1 0 0 1 1 1 1 zinc-ribbon domain UPF0547 PF10571.4 gi|433592504|ref|YP_007282000.1| - 0.0013 18.4 0.9 0.002 17.8 0.7 1.3 1 0 0 1 1 1 1 Uncharacterised protein family UPF0547 Prok-RING_1 PF14446.1 gi|433592504|ref|YP_007282000.1| - 0.0095 15.6 1.1 0.014 15.1 0.8 1.2 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 Nudix_N_2 PF14803.1 gi|433592504|ref|YP_007282000.1| - 0.16 11.7 0.6 12 5.7 0.1 2.2 2 0 0 2 2 2 0 Nudix N-terminal YhfH PF14149.1 gi|433592504|ref|YP_007282000.1| - 0.27 11.0 2.3 0.46 10.3 1.6 1.4 1 0 0 1 1 1 0 YhfH-like protein zf-RING_3 PF14369.1 gi|433592504|ref|YP_007282000.1| - 0.33 10.9 4.1 8.4 6.4 0.2 2.2 2 0 0 2 2 2 0 zinc-finger DHquinase_I PF01487.10 gi|433592505|ref|YP_007282001.1| - 4.7e-48 163.7 0.0 5.5e-48 163.5 0.0 1.0 1 0 0 1 1 1 1 Type I 3-dehydroquinase Rnk_N PF14760.1 gi|433592505|ref|YP_007282001.1| - 1.3 9.1 5.3 1.6 8.8 0.3 3.1 3 0 0 3 3 3 0 Rnk N-terminus TFIIB PF00382.14 gi|433592506|ref|YP_007282002.1| - 1e-41 140.6 0.6 5.1e-22 77.4 0.0 2.2 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|433592506|ref|YP_007282002.1| - 8.8e-16 56.9 4.8 8.8e-16 56.9 3.3 2.1 2 1 0 2 2 2 1 TFIIB zinc-binding A2L_zn_ribbon PF08792.5 gi|433592506|ref|YP_007282002.1| - 0.016 14.6 1.1 0.029 13.8 0.7 1.5 1 0 0 1 1 1 0 A2L zinc ribbon domain Sigma70_r4 PF04545.11 gi|433592506|ref|YP_007282002.1| - 0.018 14.3 0.1 1.3 8.4 0.0 3.4 3 0 0 3 3 3 0 Sigma-70, region 4 Rubredoxin PF00301.15 gi|433592506|ref|YP_007282002.1| - 0.097 12.5 0.8 15 5.5 0.1 2.5 2 0 0 2 2 2 0 Rubredoxin RRN7 PF11781.3 gi|433592506|ref|YP_007282002.1| - 0.15 11.5 1.2 0.27 10.7 0.8 1.4 1 0 0 1 1 1 0 RNA polymerase I-specific transcription initiation factor Rrn7 Trm112p PF03966.11 gi|433592506|ref|YP_007282002.1| - 2.5 8.5 7.2 25 5.3 3.6 2.9 2 1 0 2 2 2 0 Trm112p-like protein NTPase_I-T PF01931.13 gi|433592507|ref|YP_007282003.1| - 1.3e-38 132.4 0.0 1.4e-38 132.2 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF84 LexA_DNA_bind PF01726.11 gi|433592508|ref|YP_007282004.1| - 0.0008 18.9 0.0 0.0013 18.2 0.0 1.2 1 0 0 1 1 1 1 LexA DNA binding domain HTH_24 PF13412.1 gi|433592508|ref|YP_007282004.1| - 0.0039 16.5 0.3 0.9 8.9 0.0 2.9 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|433592508|ref|YP_007282004.1| - 0.11 12.2 0.0 0.14 11.9 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain HAD_2 PF13419.1 gi|433592509|ref|YP_007282005.1| - 3.2e-16 60.0 0.7 3.8e-16 59.7 0.5 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|433592509|ref|YP_007282005.1| - 3.5e-11 43.9 0.2 7.8e-10 39.5 0.1 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|433592509|ref|YP_007282005.1| - 4.2e-09 35.9 0.1 1.1e-08 34.6 0.0 1.7 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.2 gi|433592509|ref|YP_007282005.1| - 0.04 14.0 0.8 0.056 13.5 0.6 1.3 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase CO_deh_flav_C PF03450.12 gi|433592509|ref|YP_007282005.1| - 0.12 12.2 0.0 0.26 11.2 0.0 1.4 1 0 0 1 1 1 0 CO dehydrogenase flavoprotein C-terminal domain HTH_20 PF12840.2 gi|433592510|ref|YP_007282006.1| - 1.2e-11 44.2 0.8 0.00013 21.6 0.1 2.4 2 0 0 2 2 2 2 Helix-turn-helix domain MarR PF01047.17 gi|433592510|ref|YP_007282006.1| - 4.6e-10 39.0 0.0 9.8e-05 21.9 0.0 2.3 2 0 0 2 2 2 2 MarR family HTH_34 PF13601.1 gi|433592510|ref|YP_007282006.1| - 9.7e-10 38.3 0.0 0.00022 21.1 0.0 2.2 2 0 0 2 2 2 2 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|433592510|ref|YP_007282006.1| - 9.8e-10 37.9 1.0 3.1e-06 26.7 0.1 2.7 2 1 0 2 2 2 2 MarR family HTH_5 PF01022.15 gi|433592510|ref|YP_007282006.1| - 1.2e-08 34.5 0.0 0.0009 18.8 0.0 2.3 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|433592510|ref|YP_007282006.1| - 7e-08 31.7 0.0 7.7e-05 22.0 0.0 2.3 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|433592510|ref|YP_007282006.1| - 7.3e-08 32.0 0.0 0.002 17.7 0.0 2.2 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB Fe_dep_repress PF01325.14 gi|433592510|ref|YP_007282006.1| - 4.9e-05 23.1 0.1 0.00025 20.9 0.0 2.2 3 0 0 3 3 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_Crp_2 PF13545.1 gi|433592510|ref|YP_007282006.1| - 6.6e-05 22.6 0.0 0.004 16.8 0.0 2.7 3 0 0 3 3 3 1 Crp-like helix-turn-helix domain DUF2250 PF10007.4 gi|433592510|ref|YP_007282006.1| - 0.00027 20.8 0.0 0.23 11.3 0.0 2.3 2 1 0 2 2 2 2 Uncharacterized protein conserved in archaea (DUF2250) HTH_11 PF08279.7 gi|433592510|ref|YP_007282006.1| - 0.00041 19.9 0.0 0.00086 18.9 0.0 1.5 1 0 0 1 1 1 1 HTH domain HTH_36 PF13730.1 gi|433592510|ref|YP_007282006.1| - 0.00061 19.8 0.0 0.0097 16.0 0.0 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_27 PF13463.1 gi|433592510|ref|YP_007282006.1| - 0.0013 19.0 0.3 0.027 14.8 0.0 2.6 2 1 0 2 2 2 1 Winged helix DNA-binding domain DUF4423 PF14394.1 gi|433592510|ref|YP_007282006.1| - 0.0013 18.3 0.0 0.64 9.5 0.0 2.1 2 0 0 2 2 2 2 Domain of unknown function (DUF4423) HTH_IclR PF09339.5 gi|433592510|ref|YP_007282006.1| - 0.0018 17.8 2.5 0.0095 15.5 0.4 2.6 2 1 0 2 2 2 1 IclR helix-turn-helix domain GntR PF00392.16 gi|433592510|ref|YP_007282006.1| - 0.0036 16.7 0.1 0.033 13.6 0.0 2.2 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family RP-C PF03428.8 gi|433592510|ref|YP_007282006.1| - 0.0076 15.7 0.2 0.83 9.0 0.1 2.4 2 0 0 2 2 2 1 Replication protein C N-terminal domain FaeA PF04703.7 gi|433592510|ref|YP_007282006.1| - 0.028 14.5 0.0 0.76 9.9 0.0 2.2 2 0 0 2 2 2 0 FaeA-like protein HTH_41 PF14502.1 gi|433592510|ref|YP_007282006.1| - 0.048 13.2 0.0 0.3 10.7 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain Rrf2 PF02082.15 gi|433592510|ref|YP_007282006.1| - 0.086 12.9 0.0 0.29 11.2 0.0 1.8 2 0 0 2 2 2 0 Transcriptional regulator HTH_AsnC-type PF13404.1 gi|433592510|ref|YP_007282006.1| - 0.092 12.2 0.1 0.25 10.9 0.1 1.7 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain LexA_DNA_bind PF01726.11 gi|433592510|ref|YP_007282006.1| - 0.12 12.0 0.0 1.2 8.7 0.0 2.2 2 0 0 2 2 2 0 LexA DNA binding domain Band_7 PF01145.20 gi|433592511|ref|YP_007282007.1| - 1.3e-37 129.4 4.5 1.3e-37 129.4 3.1 2.5 3 0 0 3 3 3 1 SPFH domain / Band 7 family Band_7_1 PF13421.1 gi|433592511|ref|YP_007282007.1| - 0.00027 20.5 0.3 0.00027 20.5 0.2 1.8 2 1 0 2 2 2 1 SPFH domain-Band 7 family YkyA PF10368.4 gi|433592511|ref|YP_007282007.1| - 9.8 5.4 10.0 0.46 9.7 2.3 2.0 2 0 0 2 2 2 0 Putative cell-wall binding lipoprotein NfeD PF01957.13 gi|433592512|ref|YP_007282008.1| - 4.1e-14 52.9 2.6 5.1e-14 52.6 1.8 1.1 1 0 0 1 1 1 1 NfeD-like C-terminal, partner-binding PBP1_TM PF14812.1 gi|433592513|ref|YP_007282009.1| - 2.7 8.3 8.3 17 5.8 5.7 2.1 1 1 0 1 1 1 0 Transmembrane domain of transglycosylase PBP1 at N-terminal PK PF00224.16 gi|433592514|ref|YP_007282010.1| - 1.6e-119 398.6 5.4 2.3e-119 398.0 3.7 1.2 1 0 0 1 1 1 1 Pyruvate kinase, barrel domain PK_C PF02887.11 gi|433592514|ref|YP_007282010.1| - 7.1e-34 115.8 1.5 1.6e-33 114.7 1.0 1.6 1 0 0 1 1 1 1 Pyruvate kinase, alpha/beta domain PEP-utilizers PF00391.18 gi|433592514|ref|YP_007282010.1| - 2.2e-10 39.9 0.2 2.2e-10 39.9 0.2 3.4 6 0 0 6 6 6 1 PEP-utilising enzyme, mobile domain PRA-PH PF01503.12 gi|433592514|ref|YP_007282010.1| - 0.25 11.6 2.8 7 6.9 0.3 2.9 2 0 0 2 2 2 0 Phosphoribosyl-ATP pyrophosphohydrolase GYD PF08734.6 gi|433592515|ref|YP_007282011.1| - 8.2e-06 25.4 0.0 9.1e-06 25.3 0.0 1.2 1 0 0 1 1 1 1 GYD domain Herpes_LMP2 PF07415.6 gi|433592516|ref|YP_007282012.1| - 0.099 11.2 1.6 0.11 11.0 1.1 1.0 1 0 0 1 1 1 0 Gammaherpesvirus latent membrane protein (LMP2) protein tRNA-synt_1g PF09334.6 gi|433592517|ref|YP_007282013.1| - 9.1e-138 459.1 0.0 1.1e-137 458.8 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (M) tRNA_bind PF01588.15 gi|433592517|ref|YP_007282013.1| - 2.4e-21 75.3 0.1 4e-21 74.6 0.1 1.4 1 0 0 1 1 1 1 Putative tRNA binding domain tRNA-synt_1 PF00133.17 gi|433592517|ref|YP_007282013.1| - 5.7e-15 54.3 0.1 3.8e-09 35.1 0.1 3.1 2 1 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1e PF01406.14 gi|433592517|ref|YP_007282013.1| - 3.5e-10 39.5 0.0 4e-07 29.4 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain Anticodon_1 PF08264.8 gi|433592517|ref|YP_007282013.1| - 2.9e-07 30.3 0.0 5.8e-07 29.3 0.0 1.5 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1d PF00750.14 gi|433592517|ref|YP_007282013.1| - 0.00038 19.3 1.6 0.2 10.4 0.1 2.3 1 1 1 2 2 2 2 tRNA synthetases class I (R) tRNA-synt_1f PF01921.13 gi|433592517|ref|YP_007282013.1| - 0.0031 16.2 0.0 0.28 9.8 0.0 2.9 3 0 0 3 3 3 1 tRNA synthetases class I (K) UCR_Fe-S_N PF10399.4 gi|433592518|ref|YP_007282014.1| - 0.014 14.5 1.5 0.014 14.5 1.0 2.3 2 0 0 2 2 2 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal SMN PF06003.7 gi|433592518|ref|YP_007282014.1| - 0.053 12.6 0.0 0.083 11.9 0.0 1.2 1 0 0 1 1 1 0 Survival motor neuron protein (SMN) TAT_signal PF10518.4 gi|433592518|ref|YP_007282014.1| - 0.12 12.4 2.7 0.41 10.7 1.9 1.9 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Pyridoxal_deC PF00282.14 gi|433592519|ref|YP_007282015.1| - 1.8e-28 99.0 0.0 2.7e-28 98.4 0.0 1.3 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain Aminotran_5 PF00266.14 gi|433592519|ref|YP_007282015.1| - 4.4e-14 51.9 0.0 5.8e-14 51.6 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.16 gi|433592519|ref|YP_007282015.1| - 5.1e-07 28.9 0.0 1.9e-06 27.0 0.0 1.8 1 1 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|433592519|ref|YP_007282015.1| - 3e-06 26.6 0.0 5.2e-06 25.8 0.0 1.3 1 1 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.12 gi|433592519|ref|YP_007282015.1| - 0.00016 20.8 0.1 0.00025 20.2 0.1 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family SHMT PF00464.14 gi|433592519|ref|YP_007282015.1| - 0.0028 16.0 0.0 0.0042 15.4 0.0 1.3 1 0 0 1 1 1 1 Serine hydroxymethyltransferase SLA_LP_auto_ag PF05889.8 gi|433592519|ref|YP_007282015.1| - 0.11 10.9 0.0 0.15 10.4 0.0 1.1 1 0 0 1 1 1 0 Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) Asparaginase PF00710.15 gi|433592520|ref|YP_007282016.1| - 1.2e-87 293.6 0.1 1.5e-87 293.4 0.0 1.0 1 0 0 1 1 1 1 Asparaginase Acetyltransf_1 PF00583.19 gi|433592521|ref|YP_007282017.1| - 9.8e-10 38.3 0.7 2.2e-09 37.1 0.3 1.7 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|433592521|ref|YP_007282017.1| - 3e-05 24.1 3.1 0.0032 17.5 0.1 2.9 2 1 0 2 2 2 2 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|433592521|ref|YP_007282017.1| - 0.001 18.9 0.8 0.013 15.3 0.1 2.6 2 1 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|433592521|ref|YP_007282017.1| - 0.0041 17.0 0.0 0.14 12.1 0.0 2.2 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain PknH_C PF14032.1 gi|433592521|ref|YP_007282017.1| - 0.0057 16.2 1.0 0.011 15.2 0.7 1.5 1 0 0 1 1 1 1 PknH-like extracellular domain Acetyltransf_CG PF14542.1 gi|433592521|ref|YP_007282017.1| - 0.013 15.4 0.1 0.031 14.1 0.1 1.7 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase DUF3749 PF12568.3 gi|433592521|ref|YP_007282017.1| - 0.016 14.7 0.0 0.033 13.7 0.0 1.5 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|433592521|ref|YP_007282017.1| - 0.16 12.1 0.0 0.46 10.6 0.0 1.8 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.1 gi|433592521|ref|YP_007282017.1| - 0.2 11.6 6.6 0.13 12.2 0.6 2.6 3 0 0 3 3 3 0 Acetyltransferase (GNAT) domain ThiS PF02597.15 gi|433592522|ref|YP_007282018.1| - 7.1e-16 58.4 0.6 8e-16 58.2 0.4 1.0 1 0 0 1 1 1 1 ThiS family TrkA_C PF02080.16 gi|433592523|ref|YP_007282019.1| - 1.7e-08 33.8 2.7 3.6e-08 32.8 0.4 2.4 2 0 0 2 2 2 1 TrkA-C domain TrkA_C PF02080.16 gi|433592524|ref|YP_007282020.1| - 1.3e-05 24.6 0.2 5.6e-05 22.6 0.0 2.2 2 0 0 2 2 2 1 TrkA-C domain YrhC PF14143.1 gi|433592524|ref|YP_007282020.1| - 0.082 12.8 0.2 0.16 11.8 0.1 1.5 1 0 0 1 1 1 0 YrhC-like protein DUF3084 PF11283.3 gi|433592524|ref|YP_007282020.1| - 0.32 10.8 3.3 0.56 10.1 0.2 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3084) 5TM-5TMR_LYT PF07694.7 gi|433592524|ref|YP_007282020.1| - 0.83 8.9 7.6 1.3 8.3 5.3 1.2 1 0 0 1 1 1 0 5TMR of 5TMR-LYT TrkA_N PF02254.13 gi|433592525|ref|YP_007282021.1| - 3.4e-30 104.4 1.0 5.3e-30 103.8 0.7 1.3 1 0 0 1 1 1 1 TrkA-N domain Ion_trans_2 PF07885.11 gi|433592525|ref|YP_007282021.1| - 2.1e-13 49.7 2.7 2.1e-13 49.7 1.9 2.2 2 0 0 2 2 2 1 Ion channel Ion_trans PF00520.26 gi|433592525|ref|YP_007282021.1| - 5.7e-05 22.4 0.8 0.00012 21.3 0.6 1.5 1 0 0 1 1 1 1 Ion transport protein NAD_binding_7 PF13241.1 gi|433592525|ref|YP_007282021.1| - 0.0016 18.6 0.2 0.0035 17.5 0.1 1.5 1 1 0 1 1 1 1 Putative NAD(P)-binding NTP_transf_3 PF12804.2 gi|433592525|ref|YP_007282021.1| - 0.0045 17.0 0.2 0.021 14.9 0.1 1.9 1 1 1 2 2 2 1 MobA-like NTP transferase domain XdhC_C PF13478.1 gi|433592525|ref|YP_007282021.1| - 0.022 15.0 0.1 0.038 14.3 0.1 1.3 1 0 0 1 1 1 0 XdhC Rossmann domain NmrA PF05368.8 gi|433592525|ref|YP_007282021.1| - 0.06 12.5 0.1 0.092 11.9 0.1 1.4 1 0 0 1 1 1 0 NmrA-like family DUF1853 PF08907.6 gi|433592525|ref|YP_007282021.1| - 0.2 10.8 0.0 0.3 10.2 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1853) DUF2975 PF11188.3 gi|433592525|ref|YP_007282021.1| - 2.3 7.9 5.9 0.75 9.5 0.3 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF2975) HPP PF04982.8 gi|433592526|ref|YP_007282022.1| - 3e-07 30.3 3.4 6.1e-07 29.3 2.3 1.5 1 0 0 1 1 1 1 HPP family Usp PF00582.21 gi|433592526|ref|YP_007282022.1| - 4.3e-05 23.7 2.2 0.0012 19.0 0.3 2.4 2 0 0 2 2 2 2 Universal stress protein family DeoC PF01791.4 gi|433592527|ref|YP_007282023.1| - 4.2e-34 117.8 2.4 4.7e-34 117.7 1.7 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase GTP1_OBG PF01018.17 gi|433592527|ref|YP_007282023.1| - 0.032 13.8 0.4 0.067 12.8 0.0 1.6 2 0 0 2 2 2 0 GTP1/OBG PGI PF00342.14 gi|433592528|ref|YP_007282024.1| - 1.1e-48 165.9 0.0 1.5e-48 165.4 0.0 1.1 1 0 0 1 1 1 1 Phosphoglucose isomerase Abi PF02517.11 gi|433592529|ref|YP_007282025.1| - 1.1e-15 57.5 4.4 1.1e-15 57.5 3.1 3.6 3 2 0 3 3 3 1 CAAX protease self-immunity 60KD_IMP PF02096.15 gi|433592529|ref|YP_007282025.1| - 0.0073 15.9 5.4 0.045 13.4 3.7 2.0 1 1 0 1 1 1 1 60Kd inner membrane protein DUF3522 PF12036.3 gi|433592529|ref|YP_007282025.1| - 2.2 8.0 7.0 0.18 11.5 0.2 2.5 2 2 1 3 3 3 0 Protein of unknown function (DUF3522) Chromate_transp PF02417.10 gi|433592529|ref|YP_007282025.1| - 4.5 6.8 34.7 0.55 9.8 6.5 4.4 1 1 1 3 3 3 0 Chromate transporter Rad50_zn_hook PF04423.9 gi|433592530|ref|YP_007282026.1| - 0.00098 18.5 4.7 0.041 13.3 0.4 2.5 1 1 1 2 2 2 2 Rad50 zinc hook motif UPF0278 PF08745.6 gi|433592530|ref|YP_007282026.1| - 0.003 16.8 0.7 0.0039 16.4 0.3 1.4 1 1 0 1 1 1 1 UPF0278 family DZR PF12773.2 gi|433592530|ref|YP_007282026.1| - 0.0031 17.2 0.5 0.0048 16.6 0.4 1.3 1 0 0 1 1 1 1 Double zinc ribbon Zn-ribbon_8 PF09723.5 gi|433592530|ref|YP_007282026.1| - 0.0081 16.0 6.5 0.089 12.7 4.5 2.2 1 1 0 1 1 1 1 Zinc ribbon domain NOB1_Zn_bind PF08772.6 gi|433592530|ref|YP_007282026.1| - 0.011 15.4 0.3 0.019 14.7 0.2 1.4 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like DNA_ligase_ZBD PF03119.11 gi|433592530|ref|YP_007282026.1| - 0.012 15.2 2.2 0.023 14.3 0.2 2.2 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zf-C3HC4_3 PF13920.1 gi|433592530|ref|YP_007282026.1| - 0.012 15.2 0.8 0.017 14.7 0.6 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) DUF4411 PF14367.1 gi|433592530|ref|YP_007282026.1| - 0.021 14.5 0.2 1.8 8.2 0.1 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4411) SprT-like PF10263.4 gi|433592530|ref|YP_007282026.1| - 0.026 14.1 0.0 0.031 13.9 0.0 1.2 1 0 0 1 1 1 0 SprT-like family PIN PF01850.16 gi|433592530|ref|YP_007282026.1| - 0.035 14.4 0.7 1.4 9.2 0.5 2.1 1 1 0 1 1 1 0 PIN domain CpXC PF14353.1 gi|433592530|ref|YP_007282026.1| - 0.047 13.6 0.7 0.29 11.1 0.0 2.3 1 1 1 2 2 2 0 CpXC protein zinc-ribbons_6 PF07191.7 gi|433592530|ref|YP_007282026.1| - 0.048 13.4 0.9 0.084 12.6 0.7 1.3 1 0 0 1 1 1 0 zinc-ribbons DUF3663 PF12404.3 gi|433592530|ref|YP_007282026.1| - 0.079 12.7 0.0 0.19 11.5 0.0 1.7 1 0 0 1 1 1 0 Peptidase zf-C2H2_4 PF13894.1 gi|433592530|ref|YP_007282026.1| - 0.1 12.9 1.2 10 6.7 0.1 2.4 1 1 1 2 2 2 0 C2H2-type zinc finger HAD_2 PF13419.1 gi|433592530|ref|YP_007282026.1| - 0.11 12.7 0.0 0.2 11.8 0.0 1.4 1 1 0 1 1 1 0 Haloacid dehalogenase-like hydrolase Zn_Tnp_IS1 PF03811.8 gi|433592530|ref|YP_007282026.1| - 0.11 11.9 1.1 1.8 8.1 0.1 2.7 3 0 0 3 3 3 0 InsA N-terminal domain PIN_4 PF13638.1 gi|433592530|ref|YP_007282026.1| - 0.15 12.1 0.9 3.9 7.5 0.6 2.2 1 1 0 1 1 1 0 PIN domain zf-C2H2 PF00096.21 gi|433592530|ref|YP_007282026.1| - 0.19 12.1 2.2 2.7 8.5 0.2 2.4 2 0 0 2 2 2 0 Zinc finger, C2H2 type HypA PF01155.14 gi|433592530|ref|YP_007282026.1| - 0.19 11.3 2.9 0.29 10.8 2.0 1.6 1 1 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-ribbon_3 PF13248.1 gi|433592530|ref|YP_007282026.1| - 0.24 10.6 1.5 0.43 9.8 1.0 1.5 1 0 0 1 1 1 0 zinc-ribbon domain zf-C2HC_2 PF13913.1 gi|433592530|ref|YP_007282026.1| - 0.29 10.8 8.2 0.21 11.2 0.5 2.3 1 1 1 2 2 2 0 zinc-finger of a C2HC-type DNA_RNApol_7kD PF03604.8 gi|433592530|ref|YP_007282026.1| - 0.85 9.1 3.5 1.5 8.3 2.4 1.4 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit zinc_ribbon_2 PF13240.1 gi|433592530|ref|YP_007282026.1| - 1.2 8.7 4.4 9 5.9 3.3 2.2 1 1 2 3 3 3 0 zinc-ribbon domain Rubredoxin PF00301.15 gi|433592530|ref|YP_007282026.1| - 1.3 9.0 4.5 38 4.2 3.1 2.4 1 1 0 1 1 1 0 Rubredoxin PRC PF05239.11 gi|433592531|ref|YP_007282027.1| - 1.6e-11 43.9 0.1 1.8e-11 43.7 0.1 1.1 1 0 0 1 1 1 1 PRC-barrel domain GTP_EFTU PF00009.22 gi|433592532|ref|YP_007282028.1| - 8.6e-32 110.0 0.0 6.6e-31 107.1 0.0 2.3 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain IF-2 PF11987.3 gi|433592532|ref|YP_007282028.1| - 5.9e-23 80.8 3.1 1.2e-22 79.8 1.1 2.3 2 0 0 2 2 2 1 Translation-initiation factor 2 GTP_EFTU_D4 PF14578.1 gi|433592532|ref|YP_007282028.1| - 1.2e-11 44.1 0.5 3.8e-11 42.4 0.0 2.1 2 0 0 2 2 2 1 Elongation factor Tu domain 4 GTP_EFTU_D2 PF03144.20 gi|433592532|ref|YP_007282028.1| - 1.7e-10 40.8 13.2 2e-08 34.2 0.1 3.2 4 0 0 4 4 4 2 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|433592532|ref|YP_007282028.1| - 1.9e-06 27.8 0.0 4.9e-06 26.4 0.0 1.8 1 0 0 1 1 1 1 50S ribosome-binding GTPase Miro PF08477.8 gi|433592532|ref|YP_007282028.1| - 0.0013 19.2 0.0 0.0034 17.8 0.0 1.7 1 0 0 1 1 1 1 Miro-like protein ATP_bind_1 PF03029.12 gi|433592532|ref|YP_007282028.1| - 0.0015 18.1 0.0 0.0034 16.9 0.0 1.6 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein Dynamin_N PF00350.18 gi|433592532|ref|YP_007282028.1| - 0.0031 17.3 0.2 0.27 11.0 0.0 2.8 2 0 0 2 2 2 1 Dynamin family Cyclophil_like PF04126.8 gi|433592533|ref|YP_007282029.1| - 1.3e-20 73.2 0.0 1.4e-20 73.1 0.0 1.0 1 0 0 1 1 1 1 Cyclophilin-like ALF PF03752.8 gi|433592533|ref|YP_007282029.1| - 7.6 6.4 8.3 2.1 8.2 2.7 2.3 2 0 0 2 2 2 0 Short repeats of unknown function bPH_6 PF10756.4 gi|433592534|ref|YP_007282030.1| - 0.0088 15.9 6.0 0.026 14.4 4.2 1.8 1 1 0 1 1 1 1 Bacterial PH domain DUF3483 PF11982.3 gi|433592534|ref|YP_007282030.1| - 0.095 11.9 8.0 0.018 14.3 3.0 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF3483) CTP_synth_N PF06418.9 gi|433592536|ref|YP_007282032.1| - 1.2e-127 424.7 0.1 1.6e-127 424.2 0.1 1.1 1 0 0 1 1 1 1 CTP synthase N-terminus GATase PF00117.23 gi|433592536|ref|YP_007282032.1| - 1.5e-49 168.0 0.0 3.1e-49 167.0 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|433592536|ref|YP_007282032.1| - 1.7e-08 34.1 0.0 1e-07 31.6 0.0 2.0 1 1 0 1 1 1 1 Peptidase C26 CbiA PF01656.18 gi|433592536|ref|YP_007282032.1| - 3e-07 30.0 0.0 6e-07 29.0 0.0 1.5 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain GMP_synt_C PF00958.17 gi|433592537|ref|YP_007282033.1| - 8.7e-29 99.0 0.1 2.8e-28 97.4 0.1 1.9 2 0 0 2 2 2 1 GMP synthase C terminal domain NAD_synthase PF02540.12 gi|433592537|ref|YP_007282033.1| - 1.2e-08 34.1 0.0 1.8e-05 23.7 0.0 2.2 2 0 0 2 2 2 2 NAD synthase tRNA_Me_trans PF03054.11 gi|433592537|ref|YP_007282033.1| - 5.4e-05 21.9 0.0 0.0011 17.6 0.0 2.1 2 0 0 2 2 2 1 tRNA methyl transferase Asn_synthase PF00733.16 gi|433592537|ref|YP_007282033.1| - 0.0001 21.9 0.1 0.00025 20.6 0.0 1.6 2 0 0 2 2 2 1 Asparagine synthase QueC PF06508.8 gi|433592537|ref|YP_007282033.1| - 0.0026 17.0 0.1 0.012 14.9 0.0 1.9 1 1 0 2 2 2 1 Queuosine biosynthesis protein QueC ThiI PF02568.9 gi|433592537|ref|YP_007282033.1| - 0.0027 17.1 0.0 0.007 15.8 0.0 1.6 1 1 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) ATP_bind_3 PF01171.15 gi|433592537|ref|YP_007282033.1| - 0.021 14.3 0.0 0.035 13.6 0.0 1.6 1 1 0 1 1 1 0 PP-loop family PAPS_reduct PF01507.14 gi|433592537|ref|YP_007282033.1| - 0.067 13.0 0.0 0.12 12.2 0.0 1.5 1 0 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family 5-FTHF_cyc-lig PF01812.15 gi|433592539|ref|YP_007282035.1| - 1.8e-24 86.5 0.0 2.1e-24 86.3 0.0 1.1 1 0 0 1 1 1 1 5-formyltetrahydrofolate cyclo-ligase family MoCF_biosynth PF00994.19 gi|433592540|ref|YP_007282036.1| - 3.4e-20 71.9 1.1 4.4e-20 71.5 0.7 1.1 1 0 0 1 1 1 1 Probable molybdopterin binding domain Fe-ADH_2 PF13685.1 gi|433592540|ref|YP_007282036.1| - 0.032 13.5 0.2 0.052 12.8 0.1 1.3 1 0 0 1 1 1 0 Iron-containing alcohol dehydrogenase AvrPto PF11592.3 gi|433592540|ref|YP_007282036.1| - 0.12 12.2 0.0 0.18 11.5 0.0 1.3 1 0 0 1 1 1 0 Central core of the bacterial effector protein AvrPto ADH_zinc_N PF00107.21 gi|433592541|ref|YP_007282037.1| - 2.8e-37 127.1 0.0 4.8e-37 126.4 0.0 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.7 gi|433592541|ref|YP_007282037.1| - 1.6e-18 66.4 0.0 3.3e-18 65.4 0.0 1.5 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N_2 PF13602.1 gi|433592541|ref|YP_007282037.1| - 4.7e-18 66.3 0.0 8.5e-18 65.4 0.0 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase NAD_binding_10 PF13460.1 gi|433592541|ref|YP_007282037.1| - 0.0012 18.8 0.1 0.0032 17.4 0.1 1.8 1 1 0 1 1 1 1 NADH(P)-binding Eno-Rase_NADH_b PF12242.3 gi|433592541|ref|YP_007282037.1| - 0.0054 16.4 0.2 0.01 15.5 0.1 1.5 1 0 0 1 1 1 1 NAD(P)H binding domain of trans-2-enoyl-CoA reductase AlaDh_PNT_C PF01262.16 gi|433592541|ref|YP_007282037.1| - 0.012 15.2 0.2 0.027 14.0 0.0 1.7 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain Semialdhyde_dh PF01118.19 gi|433592541|ref|YP_007282037.1| - 0.053 13.8 0.1 0.11 12.8 0.1 1.5 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain RmlD_sub_bind PF04321.12 gi|433592541|ref|YP_007282037.1| - 0.093 11.6 0.1 5.3 5.8 0.0 2.1 1 1 1 2 2 2 0 RmlD substrate binding domain Methyltransf_24 PF13578.1 gi|433592545|ref|YP_007282041.1| - 3e-18 66.5 0.2 8.6e-18 65.1 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Prenyltrans_2 PF13249.1 gi|433592546|ref|YP_007282042.1| - 7.5e-11 42.4 0.4 6.2e-08 33.0 0.2 2.6 2 0 0 2 2 2 2 Prenyltransferase-like DUF608 PF04685.8 gi|433592546|ref|YP_007282042.1| - 0.00053 18.8 0.0 0.00088 18.0 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF608 Bac_rhamnosid PF05592.6 gi|433592546|ref|YP_007282042.1| - 0.0012 17.1 0.1 0.0018 16.5 0.1 1.2 1 0 0 1 1 1 1 Bacterial alpha-L-rhamnosidase Prenyltrans_1 PF13243.1 gi|433592546|ref|YP_007282042.1| - 0.0086 16.0 4.6 0.13 12.2 0.9 3.3 2 1 1 3 3 3 1 Prenyltransferase-like TPR_14 PF13428.1 gi|433592546|ref|YP_007282042.1| - 0.38 11.5 5.9 13 6.7 0.9 3.7 3 0 0 3 3 3 0 Tetratricopeptide repeat Methyltransf_23 PF13489.1 gi|433592547|ref|YP_007282043.1| - 2.5e-26 92.3 0.0 3.8e-26 91.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|433592547|ref|YP_007282043.1| - 4.6e-24 84.7 0.1 7.8e-24 83.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|433592547|ref|YP_007282043.1| - 5.8e-20 71.4 0.0 7.1e-20 71.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|433592547|ref|YP_007282043.1| - 5.5e-15 55.5 0.0 8.9e-15 54.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|433592547|ref|YP_007282043.1| - 3.1e-14 53.5 0.1 4.9e-14 52.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|433592547|ref|YP_007282043.1| - 3.9e-14 52.3 0.0 1.5e-13 50.4 0.0 1.7 1 1 1 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.7 gi|433592547|ref|YP_007282043.1| - 5.7e-14 52.3 0.0 9.1e-14 51.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|433592547|ref|YP_007282043.1| - 3.9e-13 49.4 0.5 1.1e-12 47.9 0.3 1.8 1 1 0 1 1 1 1 Methyltransferase domain CMAS PF02353.15 gi|433592547|ref|YP_007282043.1| - 2.2e-08 33.5 0.0 3.3e-08 32.9 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase MetW PF07021.7 gi|433592547|ref|YP_007282043.1| - 7.1e-06 25.5 0.0 2.4e-05 23.7 0.0 1.7 1 1 0 1 1 1 1 Methionine biosynthesis protein MetW PCMT PF01135.14 gi|433592547|ref|YP_007282043.1| - 9e-05 22.0 0.0 0.00012 21.7 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_8 PF05148.10 gi|433592547|ref|YP_007282043.1| - 9.6e-05 22.1 0.1 0.0079 15.8 0.1 2.3 1 1 0 1 1 1 1 Hypothetical methyltransferase Methyltransf_29 PF03141.11 gi|433592547|ref|YP_007282043.1| - 0.00013 20.4 0.0 0.00017 20.0 0.0 1.1 1 0 0 1 1 1 1 Putative S-adenosyl-L-methionine-dependent methyltransferase PrmA PF06325.8 gi|433592547|ref|YP_007282043.1| - 0.0022 17.1 0.0 0.0029 16.7 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_9 PF08003.6 gi|433592547|ref|YP_007282043.1| - 0.013 14.1 0.0 0.017 13.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) MTS PF05175.9 gi|433592547|ref|YP_007282043.1| - 0.018 14.4 0.0 0.027 13.8 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain TPMT PF05724.6 gi|433592547|ref|YP_007282043.1| - 0.076 12.4 0.0 0.12 11.8 0.0 1.2 1 0 0 1 1 1 0 Thiopurine S-methyltransferase (TPMT) KAAG1 PF15354.1 gi|433592547|ref|YP_007282043.1| - 0.1 12.9 0.1 0.47 10.8 0.0 2.0 2 0 0 2 2 2 0 Kidney-associated antigen 1 FtsJ PF01728.14 gi|433592547|ref|YP_007282043.1| - 0.13 12.2 0.0 0.17 11.8 0.0 1.2 1 0 0 1 1 1 0 FtsJ-like methyltransferase Glycos_transf_1 PF00534.15 gi|433592548|ref|YP_007282044.1| - 7.2e-34 116.6 0.0 1e-33 116.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|433592548|ref|YP_007282044.1| - 1.1e-19 71.1 4.0 2.6e-19 69.9 1.7 2.1 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|433592548|ref|YP_007282044.1| - 4.6e-18 65.5 0.1 3.5e-12 46.3 0.2 2.2 2 0 0 2 2 2 2 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.1 gi|433592548|ref|YP_007282044.1| - 8e-17 61.6 0.2 3.5e-16 59.5 0.1 2.1 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|433592548|ref|YP_007282044.1| - 2e-13 50.3 0.0 3.6e-13 49.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_20 PF00982.16 gi|433592548|ref|YP_007282044.1| - 0.0054 15.2 0.0 0.0081 14.6 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase family 20 Glyco_transf_5 PF08323.6 gi|433592548|ref|YP_007282044.1| - 0.075 12.5 0.0 0.66 9.4 0.0 2.0 2 0 0 2 2 2 0 Starch synthase catalytic domain NUDIX PF00293.23 gi|433592549|ref|YP_007282045.1| - 1.9e-11 43.7 0.3 2.6e-11 43.3 0.2 1.2 1 0 0 1 1 1 1 NUDIX domain NUDIX_4 PF14815.1 gi|433592549|ref|YP_007282045.1| - 0.00056 19.3 0.1 0.0011 18.3 0.1 1.6 1 1 0 1 1 1 1 NUDIX domain DAGK_cat PF00781.19 gi|433592550|ref|YP_007282046.1| - 3.2e-21 75.1 0.9 5.3e-21 74.4 0.7 1.3 1 0 0 1 1 1 1 Diacylglycerol kinase catalytic domain NAD_kinase PF01513.16 gi|433592550|ref|YP_007282046.1| - 0.0012 17.6 0.3 0.002 16.9 0.2 1.3 1 0 0 1 1 1 1 ATP-NAD kinase PHP_C PF13263.1 gi|433592551|ref|YP_007282047.1| - 2.9e-18 65.1 0.0 8.7e-18 63.5 0.0 1.9 1 0 0 1 1 1 1 PHP-associated PHP PF02811.14 gi|433592551|ref|YP_007282047.1| - 0.00028 20.7 0.0 0.00088 19.1 0.0 1.8 1 1 0 1 1 1 1 PHP domain Cys_rich_CPXG PF14255.1 gi|433592552|ref|YP_007282048.1| - 0.06 13.1 0.0 0.075 12.8 0.0 1.2 1 0 0 1 1 1 0 Cysteine-rich CPXCG TerY-C PF15616.1 gi|433592552|ref|YP_007282048.1| - 0.068 13.1 0.1 0.075 12.9 0.1 1.1 1 0 0 1 1 1 0 TerY-C metal binding domain Zn-ribbon_8 PF09723.5 gi|433592552|ref|YP_007282048.1| - 0.082 12.8 0.2 0.13 12.2 0.2 1.4 1 0 0 1 1 1 0 Zinc ribbon domain PAS_9 PF13426.1 gi|433592553|ref|YP_007282049.1| - 4.1e-41 139.5 0.5 1.6e-22 79.7 0.0 3.7 4 0 0 4 4 4 3 PAS domain PAS_4 PF08448.5 gi|433592553|ref|YP_007282049.1| - 7.9e-28 96.6 9.6 4.1e-13 49.3 0.2 4.0 4 0 0 4 4 4 3 PAS fold PAS PF00989.19 gi|433592553|ref|YP_007282049.1| - 2.8e-21 75.4 0.2 1.6e-15 56.8 0.0 4.1 3 1 1 4 4 4 2 PAS fold PAS_3 PF08447.6 gi|433592553|ref|YP_007282049.1| - 2.9e-16 59.3 0.2 1.7e-06 28.0 0.1 4.0 4 2 0 4 4 4 2 PAS fold HATPase_c PF02518.21 gi|433592553|ref|YP_007282049.1| - 1.6e-12 47.1 0.0 3.9e-12 45.8 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.1 gi|433592553|ref|YP_007282049.1| - 6.3e-12 44.9 0.0 3.6e-05 23.4 0.0 3.5 4 0 0 4 4 4 2 PAS domain HATPase_c_2 PF13581.1 gi|433592553|ref|YP_007282049.1| - 6.4e-09 35.6 0.0 1.7e-08 34.2 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HisKA PF00512.20 gi|433592553|ref|YP_007282049.1| - 0.00034 20.5 3.6 0.0005 20.0 1.1 2.4 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_7 PF12860.2 gi|433592553|ref|YP_007282049.1| - 0.0094 15.9 0.6 1.5 8.8 0.0 3.6 3 1 0 3 3 3 1 PAS fold HATPase_c_3 PF13589.1 gi|433592553|ref|YP_007282049.1| - 0.072 12.7 0.0 0.15 11.6 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_10 PF13596.1 gi|433592553|ref|YP_007282049.1| - 0.1 12.8 0.0 15 5.9 0.0 3.1 3 0 0 3 3 3 0 PAS domain HTH_AsnC-type PF13404.1 gi|433592554|ref|YP_007282050.1| - 5.5e-19 67.4 2.5 1.7e-17 62.6 0.6 2.2 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.1 gi|433592554|ref|YP_007282050.1| - 5.1e-15 54.5 0.1 3e-14 52.1 0.0 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding AsnC_trans_reg PF01037.16 gi|433592554|ref|YP_007282050.1| - 1.5e-09 37.4 0.9 1.5e-09 37.4 0.6 1.6 2 0 0 2 2 2 1 AsnC family Sigma70_r4_2 PF08281.7 gi|433592554|ref|YP_007282050.1| - 7.6e-05 22.0 0.0 0.00016 21.0 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 KorB PF08535.5 gi|433592554|ref|YP_007282050.1| - 0.00017 21.6 0.2 0.0079 16.3 0.0 2.1 1 1 1 2 2 2 1 KorB domain HTH_20 PF12840.2 gi|433592554|ref|YP_007282050.1| - 0.00035 20.3 0.0 0.00057 19.6 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.1 gi|433592554|ref|YP_007282050.1| - 0.00062 18.8 0.0 0.0015 17.6 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 Sigma70_r4 PF04545.11 gi|433592554|ref|YP_007282050.1| - 0.00091 18.4 0.0 0.0015 17.7 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_11 PF08279.7 gi|433592554|ref|YP_007282050.1| - 0.0019 17.8 0.8 0.0042 16.7 0.0 1.9 2 1 0 2 2 2 1 HTH domain MarR_2 PF12802.2 gi|433592554|ref|YP_007282050.1| - 0.0028 17.2 0.0 0.0052 16.4 0.0 1.5 1 0 0 1 1 1 1 MarR family DUF746 PF05344.6 gi|433592554|ref|YP_007282050.1| - 0.0054 16.2 0.2 0.28 10.7 0.0 2.5 3 0 0 3 3 2 1 Domain of Unknown Function (DUF746) DUF692 PF05114.8 gi|433592554|ref|YP_007282050.1| - 0.0073 15.2 0.2 0.0097 14.8 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF692) HTH_27 PF13463.1 gi|433592554|ref|YP_007282050.1| - 0.0094 16.2 0.1 0.054 13.8 0.0 2.1 1 1 1 2 2 2 1 Winged helix DNA-binding domain HTH_23 PF13384.1 gi|433592554|ref|YP_007282050.1| - 0.0098 15.5 0.0 0.019 14.5 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain GYD PF08734.6 gi|433592554|ref|YP_007282050.1| - 0.015 14.9 1.2 0.05 13.3 0.2 2.1 1 1 2 3 3 3 0 GYD domain MarR PF01047.17 gi|433592554|ref|YP_007282050.1| - 0.016 14.9 0.1 0.063 12.9 0.0 1.8 2 0 0 2 2 2 0 MarR family HTH_DeoR PF08220.7 gi|433592554|ref|YP_007282050.1| - 0.021 14.3 0.1 0.14 11.7 0.0 2.1 1 1 1 2 2 2 0 DeoR-like helix-turn-helix domain GerE PF00196.14 gi|433592554|ref|YP_007282050.1| - 0.022 14.0 0.0 0.063 12.6 0.0 1.7 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family HTH_IclR PF09339.5 gi|433592554|ref|YP_007282050.1| - 0.023 14.2 0.0 0.035 13.6 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain HrcA_DNA-bdg PF03444.10 gi|433592554|ref|YP_007282050.1| - 0.033 13.6 0.0 0.067 12.6 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding NapD PF03927.8 gi|433592554|ref|YP_007282050.1| - 0.051 13.4 0.7 0.091 12.5 0.5 1.4 1 0 0 1 1 1 0 NapD protein HTH_28 PF13518.1 gi|433592554|ref|YP_007282050.1| - 0.067 13.2 0.0 0.18 11.8 0.0 1.7 2 0 0 2 2 1 0 Helix-turn-helix domain HTH_Mga PF08280.6 gi|433592554|ref|YP_007282050.1| - 0.072 12.8 0.0 0.12 12.1 0.0 1.4 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain DUF4191 PF13829.1 gi|433592554|ref|YP_007282050.1| - 0.11 11.5 0.6 0.5 9.4 0.4 1.9 1 1 0 2 2 2 0 Domain of unknown function (DUF4191) TrmB PF01978.14 gi|433592554|ref|YP_007282050.1| - 0.12 12.1 0.0 0.21 11.3 0.0 1.4 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.15 gi|433592554|ref|YP_007282050.1| - 0.13 11.9 0.0 0.34 10.6 0.0 1.6 2 0 0 2 2 1 0 Bacterial regulatory protein, arsR family CPSase_sm_chain PF00988.17 gi|433592555|ref|YP_007282051.1| - 3.3e-36 123.6 0.0 3.7e-35 120.2 0.0 2.3 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase small chain, CPSase domain GATase PF00117.23 gi|433592555|ref|YP_007282051.1| - 3.8e-34 117.8 0.0 5.3e-34 117.3 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|433592555|ref|YP_007282051.1| - 1.3e-07 31.2 0.4 2.7e-05 23.6 0.3 2.3 1 1 0 1 1 1 1 Peptidase C26 DJ-1_PfpI PF01965.19 gi|433592555|ref|YP_007282051.1| - 0.0061 16.0 0.0 0.013 14.9 0.0 1.6 1 0 0 1 1 1 1 DJ-1/PfpI family Biotin_lipoyl PF00364.17 gi|433592555|ref|YP_007282051.1| - 0.047 13.3 0.0 1.8 8.2 0.1 2.7 2 0 0 2 2 2 0 Biotin-requiring enzyme DAO PF01266.19 gi|433592556|ref|YP_007282052.1| - 4.7e-07 29.0 6.5 0.00017 20.5 0.2 2.9 2 1 1 3 3 3 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|433592556|ref|YP_007282052.1| - 1.3e-05 25.1 0.9 4.1e-05 23.5 0.2 2.0 1 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.2 gi|433592556|ref|YP_007282052.1| - 3.6e-05 23.0 1.4 3.6e-05 23.0 1.0 1.6 2 0 0 2 2 2 1 FAD dependent oxidoreductase GIDA PF01134.17 gi|433592556|ref|YP_007282052.1| - 9e-05 21.4 0.2 9e-05 21.4 0.1 1.5 2 0 0 2 2 2 1 Glucose inhibited division protein A FAD_binding_2 PF00890.19 gi|433592556|ref|YP_007282052.1| - 9.1e-05 21.4 0.2 9.1e-05 21.4 0.2 2.5 3 0 0 3 3 3 1 FAD binding domain NAD_binding_8 PF13450.1 gi|433592556|ref|YP_007282052.1| - 0.00015 21.7 0.7 0.00037 20.4 0.1 2.0 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.14 gi|433592556|ref|YP_007282052.1| - 0.00017 20.7 0.1 0.00036 19.6 0.1 1.5 1 0 0 1 1 1 1 FAD binding domain HI0933_like PF03486.9 gi|433592556|ref|YP_007282052.1| - 0.0008 17.9 0.0 0.0025 16.3 0.1 1.7 2 0 0 2 2 2 1 HI0933-like protein Thi4 PF01946.12 gi|433592556|ref|YP_007282052.1| - 0.0032 16.5 0.0 0.0071 15.4 0.0 1.5 1 0 0 1 1 1 1 Thi4 family Pyr_redox PF00070.22 gi|433592556|ref|YP_007282052.1| - 0.0038 17.6 0.1 0.0088 16.4 0.1 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|433592556|ref|YP_007282052.1| - 0.0047 16.9 0.1 0.93 9.5 0.1 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.13 gi|433592556|ref|YP_007282052.1| - 0.023 14.3 0.3 0.08 12.5 0.0 1.9 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Peripla_BP_2 PF01497.13 gi|433592557|ref|YP_007282053.1| - 9.3e-14 51.1 0.0 1.4e-13 50.5 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein SIMPL PF04402.9 gi|433592558|ref|YP_007282054.1| - 2e-35 122.5 5.6 2.4e-35 122.3 3.9 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF541) He_PIG PF05345.7 gi|433592558|ref|YP_007282054.1| - 0.27 11.2 8.9 10 6.2 0.2 4.2 3 2 0 3 3 3 0 Putative Ig domain SprB PF13573.1 gi|433592558|ref|YP_007282054.1| - 0.35 10.5 4.4 1.4 8.5 3.0 2.1 1 0 0 1 1 1 0 SprB repeat PALP PF00291.20 gi|433592559|ref|YP_007282055.1| - 1.3e-52 178.9 5.1 1.5e-52 178.7 3.5 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ADH_zinc_N PF00107.21 gi|433592559|ref|YP_007282055.1| - 0.00069 19.1 0.3 0.003 17.1 0.2 2.1 1 1 0 1 1 1 1 Zinc-binding dehydrogenase Abhydrolase_6 PF12697.2 gi|433592559|ref|YP_007282055.1| - 0.0057 16.5 0.2 0.013 15.4 0.1 1.6 1 0 0 1 1 1 1 Alpha/beta hydrolase family ECH PF00378.15 gi|433592560|ref|YP_007282056.1| - 6e-52 176.2 0.0 7.3e-52 175.9 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family ECH_C PF13766.1 gi|433592560|ref|YP_007282056.1| - 0.0033 17.5 0.0 0.0059 16.7 0.0 1.4 1 0 0 1 1 1 1 2-enoyl-CoA Hydratase C-terminal region Glycos_transf_2 PF00535.21 gi|433592561|ref|YP_007282057.1| - 2.1e-17 63.3 0.0 4e-17 62.4 0.0 1.5 1 1 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|433592561|ref|YP_007282057.1| - 4.3e-08 33.2 0.2 2.7e-06 27.3 0.1 2.3 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|433592561|ref|YP_007282057.1| - 0.0039 16.3 0.0 0.0059 15.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|433592561|ref|YP_007282057.1| - 0.06 13.0 0.2 0.14 11.8 0.1 1.6 1 1 0 1 1 1 0 Glycosyl transferase family group 2 Methyltransf_11 PF08241.7 gi|433592562|ref|YP_007282058.1| - 4.8e-23 81.4 0.0 8.2e-23 80.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|433592562|ref|YP_007282058.1| - 3.9e-19 68.7 0.0 4.8e-19 68.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|433592562|ref|YP_007282058.1| - 3.8e-16 59.2 0.1 6.9e-16 58.4 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|433592562|ref|YP_007282058.1| - 9.8e-16 58.3 0.0 1.5e-15 57.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|433592562|ref|YP_007282058.1| - 2.3e-15 56.6 0.0 3e-15 56.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|433592562|ref|YP_007282058.1| - 9.5e-15 54.8 0.1 2.1e-14 53.8 0.0 1.5 2 0 0 2 2 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|433592562|ref|YP_007282058.1| - 1.7e-14 53.5 0.0 2.2e-14 53.1 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_26 PF13659.1 gi|433592562|ref|YP_007282058.1| - 8.6e-12 45.1 0.0 1.2e-11 44.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|433592562|ref|YP_007282058.1| - 2.6e-07 30.1 0.0 4.2e-07 29.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain MetW PF07021.7 gi|433592562|ref|YP_007282058.1| - 3.2e-07 29.9 0.0 5.6e-07 29.1 0.0 1.4 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW TehB PF03848.9 gi|433592562|ref|YP_007282058.1| - 5.3e-06 25.7 0.0 7.3e-06 25.2 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB UPF0020 PF01170.13 gi|433592562|ref|YP_007282058.1| - 7.5e-06 25.6 0.1 1.7e-05 24.5 0.0 1.6 2 0 0 2 2 1 1 Putative RNA methylase family UPF0020 RrnaAD PF00398.15 gi|433592562|ref|YP_007282058.1| - 0.00016 20.8 0.0 0.00022 20.3 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_4 PF02390.12 gi|433592562|ref|YP_007282058.1| - 0.00033 19.7 0.0 0.00096 18.2 0.0 1.7 1 1 1 2 2 2 1 Putative methyltransferase Methyltransf_9 PF08003.6 gi|433592562|ref|YP_007282058.1| - 0.00051 18.8 0.0 0.00069 18.4 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) TPMT PF05724.6 gi|433592562|ref|YP_007282058.1| - 0.0015 18.0 0.0 0.0022 17.4 0.0 1.2 1 0 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) Methyltransf_20 PF12147.3 gi|433592562|ref|YP_007282058.1| - 0.0049 15.7 0.0 0.0067 15.3 0.0 1.2 1 0 0 1 1 1 1 Putative methyltransferase PCMT PF01135.14 gi|433592562|ref|YP_007282058.1| - 0.005 16.3 0.0 0.0082 15.6 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) CMAS PF02353.15 gi|433592562|ref|YP_007282058.1| - 0.008 15.2 0.0 0.011 14.8 0.0 1.3 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase DUF938 PF06080.7 gi|433592562|ref|YP_007282058.1| - 0.014 14.9 0.0 0.029 13.9 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF938) NodS PF05401.6 gi|433592562|ref|YP_007282058.1| - 0.018 14.4 0.0 0.024 14.0 0.0 1.2 1 0 0 1 1 1 0 Nodulation protein S (NodS) Methyltransf_32 PF13679.1 gi|433592562|ref|YP_007282058.1| - 0.019 14.6 0.0 0.027 14.1 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain tRNA_U5-meth_tr PF05958.6 gi|433592562|ref|YP_007282058.1| - 0.026 13.2 0.0 0.051 12.2 0.0 1.5 1 1 1 2 2 2 0 tRNA (Uracil-5-)-methyltransferase FtsJ PF01728.14 gi|433592562|ref|YP_007282058.1| - 0.041 13.8 0.0 0.086 12.8 0.0 1.4 1 1 1 2 2 2 0 FtsJ-like methyltransferase Methyltransf_15 PF09445.5 gi|433592562|ref|YP_007282058.1| - 0.086 12.3 0.0 0.1 12.1 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase UPF0146 PF03686.8 gi|433592562|ref|YP_007282058.1| - 0.12 12.1 0.0 0.82 9.5 0.0 2.0 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0146) FmrO PF07091.6 gi|433592562|ref|YP_007282058.1| - 0.13 11.2 0.0 0.18 10.7 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA methyltransferase (FmrO) HTH_24 PF13412.1 gi|433592563|ref|YP_007282059.1| - 5e-05 22.6 0.0 8.4e-05 21.8 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding GntR PF00392.16 gi|433592563|ref|YP_007282059.1| - 0.00024 20.4 0.1 0.00045 19.6 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family MarR_2 PF12802.2 gi|433592563|ref|YP_007282059.1| - 0.00031 20.3 0.1 0.00047 19.7 0.1 1.3 1 0 0 1 1 1 1 MarR family TFIIE_alpha PF02002.12 gi|433592563|ref|YP_007282059.1| - 0.00077 18.9 0.0 0.0013 18.2 0.0 1.3 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_20 PF12840.2 gi|433592563|ref|YP_007282059.1| - 0.00099 18.8 0.1 0.0013 18.4 0.1 1.5 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_36 PF13730.1 gi|433592563|ref|YP_007282059.1| - 0.0022 18.0 0.0 0.0035 17.4 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|433592563|ref|YP_007282059.1| - 0.0027 17.3 0.1 0.0039 16.8 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_12 PF08461.5 gi|433592563|ref|YP_007282059.1| - 0.012 15.3 0.3 0.077 12.7 0.0 2.3 1 1 1 2 2 2 0 Ribonuclease R winged-helix domain MarR PF01047.17 gi|433592563|ref|YP_007282059.1| - 0.021 14.5 0.0 0.031 13.9 0.0 1.2 1 0 0 1 1 1 0 MarR family HTH_11 PF08279.7 gi|433592563|ref|YP_007282059.1| - 0.099 12.3 0.0 0.15 11.7 0.0 1.2 1 0 0 1 1 1 0 HTH domain Rrf2 PF02082.15 gi|433592563|ref|YP_007282059.1| - 0.11 12.6 0.0 0.16 12.1 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator HTH_27 PF13463.1 gi|433592563|ref|YP_007282059.1| - 0.13 12.6 0.0 0.2 12.0 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_5 PF01022.15 gi|433592563|ref|YP_007282059.1| - 0.13 11.9 0.0 0.18 11.4 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Lactamase_B PF00753.22 gi|433592564|ref|YP_007282060.1| - 8e-21 74.5 4.7 1.1e-20 74.1 3.3 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|433592564|ref|YP_007282060.1| - 2.4e-06 27.2 0.0 3.3e-06 26.7 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|433592564|ref|YP_007282060.1| - 0.0016 18.1 0.0 0.0021 17.7 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Gluconate_2-dh3 PF13618.1 gi|433592564|ref|YP_007282060.1| - 0.0068 16.5 1.4 0.021 14.9 0.1 2.0 2 0 0 2 2 2 1 Gluconate 2-dehydrogenase subunit 3 Aldolase_II PF00596.16 gi|433592564|ref|YP_007282060.1| - 0.029 13.9 0.5 0.05 13.2 0.3 1.3 1 0 0 1 1 1 0 Class II Aldolase and Adducin N-terminal domain DUF3029 PF11230.3 gi|433592564|ref|YP_007282060.1| - 0.12 10.5 0.1 0.44 8.6 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3029) CxxCxxCC PF03692.10 gi|433592565|ref|YP_007282061.1| - 6.2e-14 52.2 0.0 1.1e-13 51.4 0.0 1.5 1 1 0 1 1 1 1 Putative zinc- or iron-chelating domain HIPIP PF01355.12 gi|433592565|ref|YP_007282061.1| - 0.027 14.5 0.4 0.027 14.5 0.2 2.2 2 0 0 2 2 2 0 High potential iron-sulfur protein TRAM PF01938.15 gi|433592566|ref|YP_007282062.1| - 1.2e-15 56.9 3.4 2.3e-15 56.1 2.4 1.5 1 0 0 1 1 1 1 TRAM domain Radical_SAM PF04055.16 gi|433592567|ref|YP_007282063.1| - 7.6e-14 52.2 0.0 2.8e-13 50.3 0.0 2.1 1 1 0 1 1 1 1 Radical SAM superfamily HHH PF00633.18 gi|433592567|ref|YP_007282063.1| - 3e-06 26.6 0.0 8.8e-06 25.1 0.0 1.9 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_3 PF12836.2 gi|433592567|ref|YP_007282063.1| - 7e-05 22.6 0.0 0.00031 20.6 0.0 2.0 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|433592567|ref|YP_007282063.1| - 0.0015 18.6 0.0 0.0052 16.9 0.0 1.9 1 0 0 1 1 1 1 Helix-hairpin-helix domain PsbU PF06514.6 gi|433592567|ref|YP_007282063.1| - 0.0071 16.1 0.0 0.021 14.6 0.0 1.8 2 0 0 2 2 2 1 Photosystem II 12 kDa extrinsic protein (PsbU) HHH_2 PF12826.2 gi|433592567|ref|YP_007282063.1| - 0.014 15.2 0.1 0.045 13.6 0.0 1.8 1 0 0 1 1 1 0 Helix-hairpin-helix motif HTH_20 PF12840.2 gi|433592568|ref|YP_007282064.1| - 9.8e-19 66.9 6.4 4.3e-10 39.2 0.2 2.7 3 0 0 3 3 3 2 Helix-turn-helix domain HTH_5 PF01022.15 gi|433592568|ref|YP_007282064.1| - 6.8e-16 57.6 0.2 7.2e-08 31.9 0.0 2.3 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family MarR PF01047.17 gi|433592568|ref|YP_007282064.1| - 4.1e-13 48.8 0.1 1.2e-07 31.3 0.0 2.4 2 0 0 2 2 2 2 MarR family HTH_24 PF13412.1 gi|433592568|ref|YP_007282064.1| - 1.2e-12 46.9 0.0 7.4e-07 28.4 0.0 2.4 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.5 gi|433592568|ref|YP_007282064.1| - 1.8e-10 40.2 2.2 1.9e-07 30.5 0.3 2.4 2 0 0 2 2 2 2 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|433592568|ref|YP_007282064.1| - 8e-10 38.2 0.7 5.7e-07 29.1 0.1 2.5 2 0 0 2 2 2 2 MarR family TrmB PF01978.14 gi|433592568|ref|YP_007282064.1| - 1.8e-07 30.7 0.0 8.1e-05 22.2 0.0 2.5 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB Fe_dep_repress PF01325.14 gi|433592568|ref|YP_007282064.1| - 1.8e-07 30.9 0.0 3.2e-06 26.9 0.0 2.1 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_11 PF08279.7 gi|433592568|ref|YP_007282064.1| - 4.2e-07 29.4 0.2 0.0012 18.4 0.0 2.2 2 0 0 2 2 2 2 HTH domain HTH_27 PF13463.1 gi|433592568|ref|YP_007282064.1| - 1.6e-06 28.3 0.5 0.0013 19.0 0.0 2.5 2 0 0 2 2 2 1 Winged helix DNA-binding domain GntR PF00392.16 gi|433592568|ref|YP_007282064.1| - 2.3e-05 23.7 0.1 0.052 12.9 0.0 2.4 2 0 0 2 2 2 2 Bacterial regulatory proteins, gntR family HTH_12 PF08461.5 gi|433592568|ref|YP_007282064.1| - 2.7e-05 23.7 0.1 0.038 13.7 0.0 2.4 2 0 0 2 2 2 2 Ribonuclease R winged-helix domain HTH_DeoR PF08220.7 gi|433592568|ref|YP_007282064.1| - 3.6e-05 23.2 0.9 0.0091 15.5 0.0 2.2 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain Penicillinase_R PF03965.11 gi|433592568|ref|YP_007282064.1| - 6.4e-05 23.0 0.0 0.15 12.1 0.0 2.2 2 0 0 2 2 2 2 Penicillinase repressor HTH_AsnC-type PF13404.1 gi|433592568|ref|YP_007282064.1| - 0.00018 20.9 0.1 0.00083 18.8 0.1 2.2 2 0 0 2 2 1 1 AsnC-type helix-turn-helix domain HTH_34 PF13601.1 gi|433592568|ref|YP_007282064.1| - 0.0017 18.3 0.0 1.9 8.5 0.0 2.3 2 0 0 2 2 2 2 Winged helix DNA-binding domain Rrf2 PF02082.15 gi|433592568|ref|YP_007282064.1| - 0.0019 18.2 0.0 0.43 10.7 0.0 2.3 2 0 0 2 2 2 1 Transcriptional regulator DUF2513 PF10711.4 gi|433592568|ref|YP_007282064.1| - 0.007 16.4 0.0 2 8.5 0.0 2.3 2 0 0 2 2 2 1 Hypothetical protein (DUF2513) B-block_TFIIIC PF04182.7 gi|433592568|ref|YP_007282064.1| - 0.01 15.6 0.0 0.37 10.6 0.0 2.2 2 0 0 2 2 2 0 B-block binding subunit of TFIIIC Phage_rep_org_N PF09681.5 gi|433592568|ref|YP_007282064.1| - 0.025 14.1 0.0 0.9 9.1 0.0 2.2 2 0 0 2 2 2 0 N-terminal phage replisome organiser (Phage_rep_org_N) HTH_29 PF13551.1 gi|433592568|ref|YP_007282064.1| - 0.025 14.7 0.0 2.1 8.5 0.0 2.5 2 0 0 2 2 2 0 Winged helix-turn helix DUF2250 PF10007.4 gi|433592568|ref|YP_007282064.1| - 0.038 13.8 0.0 0.57 10.1 0.0 2.1 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) LexA_DNA_bind PF01726.11 gi|433592568|ref|YP_007282064.1| - 0.085 12.4 0.0 1.4 8.5 0.0 2.2 2 0 0 2 2 2 0 LexA DNA binding domain RepL PF05732.6 gi|433592568|ref|YP_007282064.1| - 0.096 11.8 0.0 0.54 9.4 0.0 1.9 2 0 0 2 2 2 0 Firmicute plasmid replication protein (RepL) HTH_Crp_2 PF13545.1 gi|433592568|ref|YP_007282064.1| - 0.11 12.3 0.1 16 5.3 0.0 2.3 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain RskA PF10099.4 gi|433592568|ref|YP_007282064.1| - 0.22 11.2 6.4 4 7.1 0.7 2.5 2 0 0 2 2 2 0 Anti-sigma-K factor rskA Churchill PF06573.6 gi|433592569|ref|YP_007282065.1| - 0.058 13.3 0.3 0.067 13.1 0.2 1.1 1 0 0 1 1 1 0 Churchill protein TF_Zn_Ribbon PF08271.7 gi|433592569|ref|YP_007282065.1| - 0.16 11.3 2.3 0.78 9.1 0.5 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding Prim_Zn_Ribbon PF08273.7 gi|433592569|ref|YP_007282065.1| - 0.2 11.7 1.6 0.36 10.9 1.1 1.4 1 0 0 1 1 1 0 Zinc-binding domain of primase-helicase HSP20 PF00011.16 gi|433592570|ref|YP_007282066.1| - 1.9e-06 27.6 0.0 3.6e-06 26.7 0.0 1.5 1 1 0 1 1 1 1 Hsp20/alpha crystallin family CTDII PF01556.13 gi|433592570|ref|YP_007282066.1| - 0.019 14.8 0.0 0.054 13.3 0.0 1.6 1 1 0 1 1 1 0 DnaJ C terminal domain DAO PF01266.19 gi|433592571|ref|YP_007282067.1| - 1.4e-64 218.2 12.7 1.6e-64 218.1 8.8 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|433592571|ref|YP_007282067.1| - 1.9e-07 30.9 3.5 6.2e-07 29.3 2.4 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain ApbA PF02558.11 gi|433592571|ref|YP_007282067.1| - 7.4e-06 25.4 0.8 1.5e-05 24.4 0.5 1.5 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA 3HCDH_N PF02737.13 gi|433592571|ref|YP_007282067.1| - 8.1e-05 22.3 0.2 0.00011 21.8 0.1 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FAD_binding_2 PF00890.19 gi|433592571|ref|YP_007282067.1| - 9.4e-05 21.4 4.2 9.4e-05 21.4 2.9 1.8 2 0 0 2 2 2 1 FAD binding domain NAD_binding_7 PF13241.1 gi|433592571|ref|YP_007282067.1| - 0.00021 21.5 0.0 0.00035 20.7 0.0 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding Thi4 PF01946.12 gi|433592571|ref|YP_007282067.1| - 0.00041 19.5 1.1 0.00093 18.3 0.8 1.5 1 0 0 1 1 1 1 Thi4 family Pyr_redox_2 PF07992.9 gi|433592571|ref|YP_007282067.1| - 0.00058 19.7 4.9 0.0036 17.2 3.4 2.1 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|433592571|ref|YP_007282067.1| - 0.00079 18.5 1.5 0.0014 17.7 1.0 1.3 1 0 0 1 1 1 1 FAD binding domain ThiF PF00899.16 gi|433592571|ref|YP_007282067.1| - 0.0011 18.7 1.3 0.0024 17.6 0.9 1.6 1 0 0 1 1 1 1 ThiF family Pyr_redox_3 PF13738.1 gi|433592571|ref|YP_007282067.1| - 0.0016 18.5 0.2 0.0026 17.8 0.1 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|433592571|ref|YP_007282067.1| - 0.0017 18.7 1.2 0.0043 17.4 0.8 1.7 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|433592571|ref|YP_007282067.1| - 0.0053 15.2 1.6 0.0093 14.4 1.1 1.3 1 0 0 1 1 1 1 HI0933-like protein NAD_Gly3P_dh_N PF01210.18 gi|433592571|ref|YP_007282067.1| - 0.012 15.4 0.4 0.02 14.6 0.2 1.3 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_2 PF03446.10 gi|433592571|ref|YP_007282067.1| - 0.016 15.0 0.1 0.031 14.1 0.0 1.4 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase GIDA PF01134.17 gi|433592571|ref|YP_007282067.1| - 0.017 14.0 2.7 0.025 13.4 1.9 1.3 1 0 0 1 1 1 0 Glucose inhibited division protein A UDPG_MGDP_dh_N PF03721.9 gi|433592571|ref|YP_007282067.1| - 0.017 14.5 0.5 0.031 13.6 0.3 1.4 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain FAD_oxidored PF12831.2 gi|433592571|ref|YP_007282067.1| - 0.023 13.8 8.5 0.036 13.1 5.9 1.5 1 1 0 1 1 1 0 FAD dependent oxidoreductase 2-Hacid_dh_C PF02826.14 gi|433592571|ref|YP_007282067.1| - 0.024 13.8 0.1 0.048 12.8 0.1 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Shikimate_DH PF01488.15 gi|433592571|ref|YP_007282067.1| - 0.042 13.9 0.0 0.088 12.9 0.0 1.5 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase AlaDh_PNT_C PF01262.16 gi|433592571|ref|YP_007282067.1| - 0.091 12.3 0.6 0.92 9.0 0.9 2.0 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_9 PF13454.1 gi|433592571|ref|YP_007282067.1| - 0.15 11.8 2.6 0.85 9.3 0.3 2.3 2 0 0 2 2 2 0 FAD-NAD(P)-binding DUF4233 PF14017.1 gi|433592572|ref|YP_007282068.1| - 0.33 10.8 7.5 0.43 10.5 4.8 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF4233) DUF981 PF06168.6 gi|433592572|ref|YP_007282068.1| - 0.43 10.3 11.4 0.61 9.8 7.9 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF981) PIRT PF15099.1 gi|433592572|ref|YP_007282068.1| - 0.44 9.7 4.7 0.17 11.1 1.7 1.4 1 1 0 1 1 1 0 Phosphoinositide-interacting protein family DUF2157 PF09925.4 gi|433592572|ref|YP_007282068.1| - 2.8 7.5 8.4 4.6 6.8 5.8 1.4 1 1 0 1 1 1 0 Predicted membrane protein (DUF2157) Tic20 PF09685.5 gi|433592572|ref|YP_007282068.1| - 3 7.8 6.7 3.4 7.6 4.6 1.2 1 0 0 1 1 1 0 Tic20-like protein DUF3353 PF11833.3 gi|433592572|ref|YP_007282068.1| - 3.7 6.9 6.9 4.3 6.7 4.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3353) DUF308 PF03729.8 gi|433592572|ref|YP_007282068.1| - 5.6 7.0 15.6 0.11 12.5 3.9 2.3 1 1 1 2 2 2 0 Short repeat of unknown function (DUF308) zf-CDGSH PF09360.5 gi|433592573|ref|YP_007282069.1| - 8.8e-11 41.4 0.2 1.6e-10 40.6 0.1 1.5 1 0 0 1 1 1 1 Iron-binding zinc finger CDGSH type E1-E2_ATPase PF00122.15 gi|433592574|ref|YP_007282070.1| - 3.3e-43 147.3 0.5 5.6e-43 146.6 0.4 1.4 1 0 0 1 1 1 1 E1-E2 ATPase Hydrolase PF00702.21 gi|433592574|ref|YP_007282070.1| - 4.1e-37 128.6 7.5 4.1e-37 128.6 5.2 1.9 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HMA PF00403.21 gi|433592574|ref|YP_007282070.1| - 2.5e-08 33.9 0.0 2.4e-07 30.7 0.0 2.5 2 0 0 2 2 2 1 Heavy-metal-associated domain HAD PF12710.2 gi|433592574|ref|YP_007282070.1| - 4.6e-08 33.4 0.0 1.6e-07 31.6 0.0 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|433592574|ref|YP_007282070.1| - 7.8e-05 22.3 1.0 0.00013 21.6 0.7 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase ATPase-cat_bd PF12156.3 gi|433592574|ref|YP_007282070.1| - 0.022 15.2 0.1 0.043 14.3 0.1 1.4 1 0 0 1 1 1 0 Putative metal-binding domain of cation transport ATPase DsbD_2 PF13386.1 gi|433592575|ref|YP_007282071.1| - 2e-47 161.5 10.5 2.4e-47 161.2 7.3 1.1 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region DUF2182 PF09948.4 gi|433592575|ref|YP_007282071.1| - 4.5 7.1 8.1 3.6 7.4 0.2 2.9 3 0 0 3 3 3 0 Predicted metal-binding integral membrane protein (DUF2182) PepSY_TM_1 PF13172.1 gi|433592576|ref|YP_007282072.1| - 2 8.2 4.1 1.4 8.7 1.1 1.9 2 0 0 2 2 2 0 PepSY-associated TM helix UPF0233 PF06781.7 gi|433592577|ref|YP_007282073.1| - 0.0045 16.5 0.2 0.005 16.4 0.1 1.2 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0233) SPC25 PF06703.6 gi|433592577|ref|YP_007282073.1| - 0.082 12.4 0.2 0.098 12.2 0.1 1.1 1 0 0 1 1 1 0 Microsomal signal peptidase 25 kDa subunit (SPC25) COX2 PF00116.15 gi|433592578|ref|YP_007282074.1| - 8.1e-25 86.9 1.7 1.7e-24 85.9 0.2 2.1 2 1 1 3 3 3 1 Cytochrome C oxidase subunit II, periplasmic domain Cupredoxin_1 PF13473.1 gi|433592578|ref|YP_007282074.1| - 1.2e-11 44.4 0.4 1.2e-10 41.2 0.0 2.3 1 1 1 2 2 2 1 Cupredoxin-like domain DUF1034 PF06280.7 gi|433592578|ref|YP_007282074.1| - 0.0021 18.4 1.5 2.1 8.7 0.1 2.5 2 0 0 2 2 2 2 Fn3-like domain (DUF1034) CARDB PF07705.6 gi|433592578|ref|YP_007282074.1| - 0.012 15.6 0.6 0.012 15.6 0.4 1.9 2 1 0 2 2 2 0 CARDB COX2-transmemb PF09125.5 gi|433592578|ref|YP_007282074.1| - 0.049 13.1 0.4 0.084 12.4 0.3 1.3 1 0 0 1 1 1 0 Cytochrome C oxidase subunit II, transmembrane COX1 PF00115.15 gi|433592579|ref|YP_007282075.1| - 1.3e-70 238.2 56.7 1.3e-70 238.2 39.3 1.8 1 1 1 2 2 2 1 Cytochrome C and Quinol oxidase polypeptide I DUF973 PF06157.6 gi|433592579|ref|YP_007282075.1| - 0.42 9.5 11.1 0.53 9.2 1.2 3.2 4 0 0 4 4 4 0 Protein of unknown function (DUF973) HupE_UreJ PF04955.7 gi|433592580|ref|YP_007282076.1| - 0.05 12.8 2.6 0.054 12.8 1.8 1.1 1 0 0 1 1 1 0 HupE / UreJ protein MarC PF01914.12 gi|433592580|ref|YP_007282076.1| - 0.11 11.6 0.8 0.11 11.5 0.5 1.0 1 0 0 1 1 1 0 MarC family integral membrane protein FixQ PF05545.6 gi|433592580|ref|YP_007282076.1| - 0.4 10.3 0.1 0.4 10.3 0.1 1.9 2 0 0 2 2 2 0 Cbb3-type cytochrome oxidase component FixQ NTP_transferase PF00483.18 gi|433592581|ref|YP_007282077.1| - 1.3e-35 122.8 0.0 1.9e-35 122.3 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|433592581|ref|YP_007282077.1| - 4.9e-07 29.9 0.7 1.3e-05 25.3 0.0 2.4 1 1 1 2 2 2 1 MobA-like NTP transferase domain MannoseP_isomer PF01050.13 gi|433592581|ref|YP_007282077.1| - 0.0098 15.5 0.1 0.016 14.7 0.1 1.3 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase DUF883 PF05957.8 gi|433592582|ref|YP_007282078.1| - 0.0022 18.3 3.2 0.0033 17.7 2.0 1.5 1 1 1 2 2 2 1 Bacterial protein of unknown function (DUF883) TerB PF05099.8 gi|433592582|ref|YP_007282078.1| - 0.18 11.5 2.4 0.17 11.6 0.9 1.5 1 1 0 1 1 1 0 Tellurite resistance protein TerB DHDPS PF00701.17 gi|433592583|ref|YP_007282079.1| - 2e-36 125.1 0.0 6e-36 123.5 0.0 1.6 1 1 1 2 2 2 1 Dihydrodipicolinate synthetase family AP_endonuc_2 PF01261.19 gi|433592583|ref|YP_007282079.1| - 0.049 12.9 0.1 0.071 12.3 0.1 1.3 1 0 0 1 1 1 0 Xylose isomerase-like TIM barrel tRNA_anti-codon PF01336.20 gi|433592584|ref|YP_007282080.1| - 0.0022 17.8 0.1 0.0083 15.9 0.0 2.0 2 0 0 2 2 2 1 OB-fold nucleic acid binding domain Notch PF00066.12 gi|433592584|ref|YP_007282080.1| - 0.063 13.5 0.2 0.1 12.8 0.2 1.3 1 0 0 1 1 1 0 LNR domain MTHFR_C PF12225.3 gi|433592584|ref|YP_007282080.1| - 0.066 12.7 0.0 0.12 11.8 0.0 1.4 1 0 0 1 1 1 0 Methylene-tetrahydrofolate reductase C terminal TFIID_30kDa PF03540.8 gi|433592584|ref|YP_007282080.1| - 0.11 12.3 0.0 0.22 11.3 0.0 1.5 1 0 0 1 1 1 0 Transcription initiation factor TFIID 23-30kDa subunit TniB PF05621.6 gi|433592585|ref|YP_007282081.1| - 0.056 12.2 0.0 0.079 11.7 0.0 1.2 1 0 0 1 1 1 0 Bacterial TniB protein Abhydrolase_2 PF02230.11 gi|433592586|ref|YP_007282082.1| - 8.3e-21 74.4 0.0 7.8e-20 71.2 0.0 1.9 1 1 0 1 1 1 1 Phospholipase/Carboxylesterase Abhydrolase_6 PF12697.2 gi|433592586|ref|YP_007282082.1| - 5.2e-13 49.4 6.4 1.4e-10 41.5 1.7 2.1 1 1 1 2 2 2 2 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|433592586|ref|YP_007282082.1| - 5.7e-13 48.8 0.3 7.4e-13 48.4 0.2 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family DLH PF01738.13 gi|433592586|ref|YP_007282082.1| - 2.6e-06 26.8 0.0 3.3e-06 26.5 0.0 1.2 1 0 0 1 1 1 1 Dienelactone hydrolase family Esterase_phd PF10503.4 gi|433592586|ref|YP_007282082.1| - 7.5e-06 25.3 2.4 1.2e-05 24.6 1.7 1.5 1 1 0 1 1 1 1 Esterase PHB depolymerase Esterase PF00756.15 gi|433592586|ref|YP_007282082.1| - 0.0011 18.4 0.0 0.0013 18.1 0.0 1.3 1 0 0 1 1 1 1 Putative esterase Peptidase_S9 PF00326.16 gi|433592586|ref|YP_007282082.1| - 0.0015 17.7 0.1 0.73 9.0 0.0 2.5 2 1 1 3 3 3 2 Prolyl oligopeptidase family FSH1 PF03959.8 gi|433592586|ref|YP_007282082.1| - 0.0046 16.4 0.0 0.0092 15.4 0.0 1.5 1 1 0 1 1 1 1 Serine hydrolase (FSH1) PE-PPE PF08237.6 gi|433592586|ref|YP_007282082.1| - 0.021 14.2 0.0 0.036 13.4 0.0 1.4 1 0 0 1 1 1 0 PE-PPE domain Abhydrolase_3 PF07859.8 gi|433592586|ref|YP_007282082.1| - 0.021 14.4 1.8 0.047 13.2 0.4 1.9 1 1 1 2 2 2 0 alpha/beta hydrolase fold Abhydrolase_1 PF00561.15 gi|433592586|ref|YP_007282082.1| - 0.038 13.5 0.0 0.46 10.0 0.0 2.0 1 1 1 2 2 2 0 alpha/beta hydrolase fold Glyoxalase PF00903.20 gi|433592587|ref|YP_007282083.1| - 4e-25 88.2 1.4 3.7e-13 49.5 0.0 2.2 2 0 0 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_2 PF12681.2 gi|433592587|ref|YP_007282083.1| - 6e-13 49.3 2.5 2.3e-07 31.3 0.1 2.2 2 0 0 2 2 2 2 Glyoxalase-like domain Glyoxalase_4 PF13669.1 gi|433592587|ref|YP_007282083.1| - 4.9e-06 26.5 2.1 0.022 14.7 0.0 2.9 1 1 1 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RHH_1 PF01402.16 gi|433592588|ref|YP_007282084.1| - 2.5e-05 23.9 0.1 2.5e-05 23.9 0.0 2.5 3 1 0 3 3 3 1 Ribbon-helix-helix protein, copG family DUF641 PF04859.7 gi|433592588|ref|YP_007282084.1| - 0.019 14.7 0.6 0.031 14.0 0.4 1.3 1 0 0 1 1 1 0 Plant protein of unknown function (DUF641) DUF3562 PF12085.3 gi|433592588|ref|YP_007282084.1| - 0.041 13.7 1.1 0.095 12.5 0.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3562) Propep_M14 PF02244.11 gi|433592588|ref|YP_007282084.1| - 0.085 12.5 4.0 2.6 7.7 0.0 2.7 2 2 0 2 2 2 0 Carboxypeptidase activation peptide Mnd1 PF03962.10 gi|433592588|ref|YP_007282084.1| - 0.089 12.4 1.4 0.6 9.7 0.2 2.0 2 0 0 2 2 2 0 Mnd1 family DUF4047 PF13256.1 gi|433592588|ref|YP_007282084.1| - 0.091 12.7 0.7 0.13 12.2 0.5 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4047) AKNA PF12443.3 gi|433592588|ref|YP_007282084.1| - 0.11 12.4 0.6 0.21 11.6 0.4 1.4 1 0 0 1 1 1 0 AT-hook-containing transcription factor Phasin_2 PF09361.5 gi|433592588|ref|YP_007282084.1| - 0.14 12.1 0.3 2.3 8.2 0.1 2.1 2 0 0 2 2 2 0 Phasin protein IncA PF04156.9 gi|433592588|ref|YP_007282084.1| - 1.5 8.3 6.5 1.7 8.2 4.5 1.3 1 1 0 1 1 1 0 IncA protein HATPase_c PF02518.21 gi|433592591|ref|YP_007282087.1| - 3.6e-27 94.2 0.0 1.3e-26 92.5 0.0 1.9 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.5 gi|433592591|ref|YP_007282087.1| - 1.2e-24 86.4 0.7 1.1e-12 47.9 0.0 2.7 2 0 0 2 2 2 2 PAS fold GAF PF01590.21 gi|433592591|ref|YP_007282087.1| - 3.9e-13 49.8 0.0 9.1e-13 48.6 0.0 1.7 1 0 0 1 1 1 1 GAF domain HisKA PF00512.20 gi|433592591|ref|YP_007282087.1| - 1.7e-11 43.9 0.2 1.7e-11 43.9 0.1 3.5 3 1 1 4 4 4 1 His Kinase A (phospho-acceptor) domain PAS_9 PF13426.1 gi|433592591|ref|YP_007282087.1| - 3e-11 43.6 0.0 5.5e-05 23.4 0.0 2.6 2 0 0 2 2 2 2 PAS domain GAF_2 PF13185.1 gi|433592591|ref|YP_007282087.1| - 1.1e-08 35.7 0.5 3.3e-08 34.1 0.0 2.1 2 0 0 2 2 2 1 GAF domain GAF_3 PF13492.1 gi|433592591|ref|YP_007282087.1| - 9.3e-07 28.9 0.1 3.3e-06 27.2 0.0 2.0 2 0 0 2 2 2 1 GAF domain ApoLp-III PF07464.6 gi|433592591|ref|YP_007282087.1| - 7.6e-05 22.7 2.9 0.024 14.6 0.0 3.4 3 0 0 3 3 3 1 Apolipophorin-III precursor (apoLp-III) HATPase_c_2 PF13581.1 gi|433592591|ref|YP_007282087.1| - 0.00038 20.2 0.8 0.00071 19.3 0.0 1.8 2 0 0 2 2 1 1 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.1 gi|433592591|ref|YP_007282087.1| - 0.0033 17.1 0.0 0.0085 15.7 0.0 1.7 2 0 0 2 2 1 1 GHKL domain PAS_8 PF13188.1 gi|433592591|ref|YP_007282087.1| - 0.0066 16.2 0.0 0.093 12.6 0.0 2.8 2 0 0 2 2 2 1 PAS domain Enkurin PF13864.1 gi|433592591|ref|YP_007282087.1| - 0.012 15.8 0.5 0.012 15.8 0.4 2.8 3 0 0 3 3 3 0 Calmodulin-binding PAS_7 PF12860.2 gi|433592591|ref|YP_007282087.1| - 0.022 14.7 0.0 0.37 10.7 0.0 2.8 2 1 0 2 2 2 0 PAS fold PAS PF00989.19 gi|433592591|ref|YP_007282087.1| - 0.043 13.5 0.0 0.66 9.7 0.0 2.4 2 0 0 2 2 2 0 PAS fold DivIC PF04977.10 gi|433592591|ref|YP_007282087.1| - 0.11 11.9 3.9 0.11 11.9 0.5 2.5 3 0 0 3 3 3 0 Septum formation initiator Noelin-1 PF12308.3 gi|433592591|ref|YP_007282087.1| - 0.29 10.9 0.1 0.29 10.9 0.0 2.4 3 0 0 3 3 2 0 Neurogenesis glycoprotein PilJ PF13675.1 gi|433592591|ref|YP_007282087.1| - 0.29 11.4 9.5 0.18 12.1 1.8 3.2 2 1 0 3 3 3 0 Type IV pili methyl-accepting chemotaxis transducer N-term DUF4375 PF14300.1 gi|433592591|ref|YP_007282087.1| - 6 6.8 8.7 1.4 8.9 0.1 3.1 3 0 0 3 3 3 0 Domain of unknown function (DUF4375) DAP_B PF07930.7 gi|433592592|ref|YP_007282088.1| - 0.051 13.3 0.1 0.09 12.5 0.0 1.4 1 0 0 1 1 1 0 D-aminopeptidase, domain B Abhydrolase_6 PF12697.2 gi|433592593|ref|YP_007282089.1| - 1.2e-34 120.1 6.2 1.5e-34 119.9 4.3 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|433592593|ref|YP_007282089.1| - 7.6e-13 48.5 0.1 1.5e-12 47.6 0.1 1.5 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_5 PF12695.2 gi|433592593|ref|YP_007282089.1| - 3.8e-12 46.1 0.0 5.2e-12 45.7 0.0 1.4 1 1 0 1 1 1 1 Alpha/beta hydrolase family EHN PF06441.7 gi|433592593|ref|YP_007282089.1| - 0.00021 21.1 0.0 0.00041 20.2 0.0 1.5 1 0 0 1 1 1 1 Epoxide hydrolase N terminus Hydrolase_4 PF12146.3 gi|433592593|ref|YP_007282089.1| - 0.099 12.5 0.0 0.24 11.2 0.0 1.7 1 0 0 1 1 1 0 Putative lysophospholipase DUF2238 PF09997.4 gi|433592594|ref|YP_007282090.1| - 0.0053 16.1 15.0 0.0067 15.8 1.8 3.6 3 1 0 3 3 3 2 Predicted membrane protein (DUF2238) DUF1980 PF09323.5 gi|433592594|ref|YP_007282090.1| - 9.9 5.8 6.3 2.4 7.8 0.1 2.7 3 0 0 3 3 3 0 Domain of unknown function (DUF1980) Aldo_ket_red PF00248.16 gi|433592595|ref|YP_007282091.1| - 4.7e-62 209.3 0.0 5.5e-62 209.1 0.0 1.1 1 0 0 1 1 1 1 Aldo/keto reductase family zf-ribbon_3 PF13248.1 gi|433592596|ref|YP_007282092.1| - 4.5e-06 25.6 0.7 6.8e-06 25.1 0.5 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|433592596|ref|YP_007282092.1| - 8.8e-05 22.2 0.4 9.3e-05 22.1 0.3 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|433592596|ref|YP_007282092.1| - 0.00019 20.7 0.9 0.00027 20.2 0.6 1.3 1 0 0 1 1 1 1 zinc-ribbon domain zf-RanBP PF00641.13 gi|433592596|ref|YP_007282092.1| - 0.096 11.8 1.6 0.15 11.1 1.1 1.3 1 0 0 1 1 1 0 Zn-finger in Ran binding protein and others Nudix_N_2 PF14803.1 gi|433592596|ref|YP_007282092.1| - 0.7 9.6 4.9 7.7 6.3 0.9 2.5 2 0 0 2 2 2 0 Nudix N-terminal RNA_POL_M_15KD PF02150.11 gi|433592596|ref|YP_007282092.1| - 9.8 5.9 6.5 1.1 9.0 0.3 2.2 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit LtrA PF06772.6 gi|433592597|ref|YP_007282093.1| - 0.0061 15.5 0.1 0.01 14.8 0.0 1.3 1 1 0 1 1 1 1 Bacterial low temperature requirement A protein (LtrA) DUF4199 PF13858.1 gi|433592597|ref|YP_007282093.1| - 0.16 11.8 0.6 14 5.5 0.0 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF4199) CcoS PF03597.10 gi|433592597|ref|YP_007282093.1| - 1.1 8.7 7.0 9.7 5.7 1.4 2.8 3 0 0 3 3 3 0 Cytochrome oxidase maturation protein cbb3-type DUF3040 PF11239.3 gi|433592597|ref|YP_007282093.1| - 2.3 8.3 5.4 7.7 6.6 2.1 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF3040) HTH_3 PF01381.17 gi|433592598|ref|YP_007282094.1| - 1e-16 60.5 0.0 1.2e-16 60.2 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.1 gi|433592598|ref|YP_007282094.1| - 1.5e-10 41.1 0.0 1.9e-10 40.8 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.2 gi|433592598|ref|YP_007282094.1| - 5e-10 39.2 0.0 6e-10 39.0 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.1 gi|433592598|ref|YP_007282094.1| - 2.1e-09 37.4 0.0 2.4e-09 37.2 0.0 1.1 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_24 PF13412.1 gi|433592598|ref|YP_007282094.1| - 5.5e-05 22.4 0.0 7.2e-05 22.0 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_25 PF13413.1 gi|433592598|ref|YP_007282094.1| - 0.00029 20.4 0.0 0.00039 20.0 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|433592598|ref|YP_007282094.1| - 0.0003 20.3 0.0 0.00057 19.4 0.0 1.5 1 0 0 1 1 1 1 HTH domain Sigma70_r4 PF04545.11 gi|433592598|ref|YP_007282094.1| - 0.00073 18.7 0.0 0.0011 18.2 0.0 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_AsnC-type PF13404.1 gi|433592598|ref|YP_007282094.1| - 0.001 18.5 0.1 0.0015 17.9 0.0 1.3 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|433592598|ref|YP_007282094.1| - 0.0012 18.5 0.0 0.0018 18.0 0.0 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_38 PF13936.1 gi|433592598|ref|YP_007282094.1| - 0.0033 16.9 0.0 0.0049 16.3 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|433592598|ref|YP_007282094.1| - 0.0091 15.6 0.0 0.016 14.9 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_23 PF13384.1 gi|433592598|ref|YP_007282094.1| - 0.01 15.4 0.0 0.014 15.0 0.0 1.2 1 0 0 1 1 1 0 Homeodomain-like domain GntR PF00392.16 gi|433592598|ref|YP_007282094.1| - 0.014 14.8 0.0 0.022 14.1 0.0 1.4 1 1 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_37 PF13744.1 gi|433592598|ref|YP_007282094.1| - 0.029 14.1 0.0 0.038 13.7 0.0 1.1 1 0 0 1 1 1 0 Helix-turn-helix domain DUF1323 PF07037.6 gi|433592598|ref|YP_007282094.1| - 0.029 14.5 0.0 0.037 14.2 0.0 1.1 1 0 0 1 1 1 0 Putative transcription regulator (DUF1323) HTH_10 PF04967.7 gi|433592598|ref|YP_007282094.1| - 0.066 12.8 0.0 0.15 11.6 0.0 1.6 1 1 0 1 1 1 0 HTH DNA binding domain HTH_7 PF02796.10 gi|433592598|ref|YP_007282094.1| - 0.074 12.9 0.1 0.12 12.2 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase DUF2892 PF11127.3 gi|433592599|ref|YP_007282095.1| - 6.6e-12 45.0 1.8 6.9e-12 45.0 1.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2892) DUF192 PF02643.10 gi|433592601|ref|YP_007282097.1| - 2.9e-28 97.6 0.0 3.8e-28 97.3 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized ACR, COG1430 DUF1905 PF08922.6 gi|433592601|ref|YP_007282097.1| - 0.098 12.2 0.0 0.23 11.0 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF1905) SecG PF03840.9 gi|433592601|ref|YP_007282097.1| - 0.36 10.5 2.6 0.62 9.8 1.8 1.3 1 0 0 1 1 1 0 Preprotein translocase SecG subunit ABC_tran PF00005.22 gi|433592602|ref|YP_007282098.1| - 3.5e-37 127.7 0.0 6.8e-37 126.8 0.0 1.5 1 0 0 1 1 1 1 ABC transporter ABC_membrane PF00664.18 gi|433592602|ref|YP_007282098.1| - 2.4e-34 119.0 1.6 3.2e-34 118.6 1.1 1.1 1 0 0 1 1 1 1 ABC transporter transmembrane region AAA_21 PF13304.1 gi|433592602|ref|YP_007282098.1| - 3.4e-06 27.2 0.0 0.00017 21.6 0.0 2.7 2 1 0 2 2 1 1 AAA domain DUF258 PF03193.11 gi|433592602|ref|YP_007282098.1| - 5.4e-05 22.4 0.0 9.6e-05 21.6 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_16 PF13191.1 gi|433592602|ref|YP_007282098.1| - 0.00028 20.9 0.1 0.00059 19.8 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|433592602|ref|YP_007282098.1| - 0.00038 20.6 0.9 0.0019 18.3 0.1 2.4 2 1 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|433592602|ref|YP_007282098.1| - 0.0005 20.8 0.1 0.0016 19.2 0.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|433592602|ref|YP_007282098.1| - 0.0012 19.1 0.0 0.0037 17.5 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|433592602|ref|YP_007282098.1| - 0.0033 16.9 0.1 0.012 15.1 0.1 1.9 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_30 PF13604.1 gi|433592602|ref|YP_007282098.1| - 0.0035 16.9 0.1 0.018 14.6 0.1 2.0 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|433592602|ref|YP_007282098.1| - 0.0049 16.1 1.1 0.13 11.4 0.8 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain Zeta_toxin PF06414.7 gi|433592602|ref|YP_007282098.1| - 0.011 14.8 0.0 0.023 13.8 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin ABC_ATPase PF09818.4 gi|433592602|ref|YP_007282098.1| - 0.017 13.7 0.1 0.031 12.8 0.1 1.3 1 0 0 1 1 1 0 Predicted ATPase of the ABC class Guanylate_kin PF00625.16 gi|433592602|ref|YP_007282098.1| - 0.029 13.8 0.1 0.8 9.1 0.1 2.9 2 1 0 2 2 2 0 Guanylate kinase AAA_10 PF12846.2 gi|433592602|ref|YP_007282098.1| - 0.046 13.1 0.4 0.11 11.9 0.3 1.7 1 1 0 1 1 1 0 AAA-like domain AAA_23 PF13476.1 gi|433592602|ref|YP_007282098.1| - 0.046 14.0 0.0 0.093 13.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain NTPase_1 PF03266.10 gi|433592602|ref|YP_007282098.1| - 0.067 12.9 0.1 2.5 7.7 0.0 2.2 2 0 0 2 2 2 0 NTPase AAA_5 PF07728.9 gi|433592602|ref|YP_007282098.1| - 0.071 12.8 0.2 0.67 9.6 0.0 2.4 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) DUF3848 PF12959.2 gi|433592603|ref|YP_007282099.1| - 0.13 12.2 0.0 0.15 12.0 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3848) PAP2 PF01569.16 gi|433592604|ref|YP_007282100.1| - 7e-20 71.0 5.9 7e-20 71.0 4.1 2.1 2 1 0 2 2 2 1 PAP2 superfamily PAP2_3 PF14378.1 gi|433592604|ref|YP_007282100.1| - 9.1e-06 25.3 2.9 1.7e-05 24.4 2.0 1.5 1 0 0 1 1 1 1 PAP2 superfamily PAP2_C PF14360.1 gi|433592604|ref|YP_007282100.1| - 0.0054 16.9 0.2 0.014 15.6 0.2 1.6 1 0 0 1 1 1 1 PAP2 superfamily C-terminal Creatininase PF02633.9 gi|433592605|ref|YP_007282101.1| - 8.9e-69 231.1 2.4 1e-68 230.9 1.7 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase HsbA PF12296.3 gi|433592606|ref|YP_007282102.1| - 0.0049 16.7 0.1 0.064 13.1 0.0 2.1 1 1 1 2 2 2 2 Hydrophobic surface binding protein A DUF4398 PF14346.1 gi|433592606|ref|YP_007282102.1| - 0.013 15.5 2.8 0.026 14.5 1.4 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4398) DUF2524 PF10732.4 gi|433592606|ref|YP_007282102.1| - 0.093 12.8 0.2 0.28 11.3 0.1 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2524) Cytochrom_B562 PF07361.6 gi|433592606|ref|YP_007282102.1| - 0.096 13.1 0.3 5.3 7.5 0.0 2.2 1 1 0 2 2 2 0 Cytochrome b562 DUF883 PF05957.8 gi|433592606|ref|YP_007282102.1| - 0.13 12.7 0.9 2.8 8.3 0.0 2.5 2 1 0 2 2 2 0 Bacterial protein of unknown function (DUF883) DUF372 PF04036.7 gi|433592607|ref|YP_007282103.1| - 3.6e-21 74.3 0.5 6e-21 73.6 0.3 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF372) DUF381 PF04038.7 gi|433592607|ref|YP_007282103.1| - 1.3e-20 73.1 0.4 1.7e-20 72.8 0.3 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF381) GPW_gp25 PF04965.9 gi|433592607|ref|YP_007282103.1| - 0.015 14.8 0.0 0.018 14.5 0.0 1.2 1 0 0 1 1 1 0 Gene 25-like lysozyme Epimerase PF01370.16 gi|433592608|ref|YP_007282104.1| - 3.2e-23 82.3 0.0 6e-23 81.4 0.0 1.4 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|433592608|ref|YP_007282104.1| - 1.2e-16 60.3 0.0 1.5e-16 59.9 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.7 gi|433592608|ref|YP_007282104.1| - 6.9e-15 54.6 0.0 2.8e-14 52.6 0.0 1.7 2 0 0 2 2 2 1 Male sterility protein NAD_binding_10 PF13460.1 gi|433592608|ref|YP_007282104.1| - 1.7e-14 54.2 0.0 2.2e-14 53.8 0.0 1.2 1 0 0 1 1 1 1 NADH(P)-binding Polysacc_synt_2 PF02719.10 gi|433592608|ref|YP_007282104.1| - 5.8e-13 48.3 0.7 1e-08 34.4 1.1 2.7 2 1 0 2 2 2 2 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.12 gi|433592608|ref|YP_007282104.1| - 4.4e-07 29.0 0.0 7.9e-07 28.2 0.0 1.3 1 0 0 1 1 1 1 RmlD substrate binding domain NmrA PF05368.8 gi|433592608|ref|YP_007282104.1| - 3.1e-05 23.3 0.0 6.1e-05 22.3 0.0 1.5 1 0 0 1 1 1 1 NmrA-like family adh_short PF00106.20 gi|433592608|ref|YP_007282104.1| - 0.00053 19.9 3.9 0.0075 16.1 2.7 2.3 1 1 0 1 1 1 1 short chain dehydrogenase AP_endonuc_2 PF01261.19 gi|433592608|ref|YP_007282104.1| - 0.0039 16.4 0.0 0.0068 15.7 0.0 1.3 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel Saccharop_dh PF03435.13 gi|433592608|ref|YP_007282104.1| - 0.06 12.3 0.0 0.076 11.9 0.0 1.2 1 0 0 1 1 1 0 Saccharopine dehydrogenase KR PF08659.5 gi|433592608|ref|YP_007282104.1| - 0.2 11.2 2.7 8.3 6.0 1.9 2.5 1 1 0 1 1 1 0 KR domain Aldo_ket_red PF00248.16 gi|433592609|ref|YP_007282105.1| - 4.9e-74 248.6 0.0 5.5e-74 248.5 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family Lipase_GDSL_2 PF13472.1 gi|433592609|ref|YP_007282105.1| - 0.079 13.0 0.1 1.2 9.1 0.0 2.5 2 1 0 2 2 2 0 GDSL-like Lipase/Acylhydrolase family Bac_luciferase PF00296.15 gi|433592610|ref|YP_007282106.1| - 1.6e-58 198.3 5.8 1.8e-58 198.0 4.0 1.0 1 0 0 1 1 1 1 Luciferase-like monooxygenase PEP_mutase PF13714.1 gi|433592610|ref|YP_007282106.1| - 0.0021 17.3 0.0 0.0035 16.5 0.0 1.3 1 0 0 1 1 1 1 Phosphoenolpyruvate phosphomutase DUF309 PF03745.9 gi|433592611|ref|YP_007282107.1| - 8.6e-16 57.1 4.3 1.3e-15 56.6 3.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF309) Peptidase_M29 PF02073.10 gi|433592612|ref|YP_007282108.1| - 5.1e-112 374.5 0.0 5.8e-112 374.3 0.0 1.0 1 0 0 1 1 1 1 Thermophilic metalloprotease (M29) DUF165 PF02592.10 gi|433592613|ref|YP_007282109.1| - 2e-41 141.5 3.3 2e-41 141.5 2.3 1.8 2 0 0 2 2 2 1 Uncharacterized ACR, YhhQ family COG1738 CSD PF00313.17 gi|433592614|ref|YP_007282110.1| - 5.9e-19 67.6 0.1 6.6e-19 67.4 0.0 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain S1-like PF14444.1 gi|433592614|ref|YP_007282110.1| - 0.01 15.5 0.3 0.013 15.2 0.2 1.4 1 1 0 1 1 1 1 S1-like OB_RNB PF08206.6 gi|433592614|ref|YP_007282110.1| - 0.04 13.4 3.6 0.058 12.9 2.5 1.2 1 0 0 1 1 1 0 Ribonuclease B OB domain PadR PF03551.9 gi|433592615|ref|YP_007282111.1| - 9.4e-13 47.7 0.2 1.1e-12 47.4 0.1 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_27 PF13463.1 gi|433592615|ref|YP_007282111.1| - 0.0044 17.3 0.0 0.0076 16.5 0.0 1.4 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_45 PF14947.1 gi|433592615|ref|YP_007282111.1| - 0.006 16.3 0.1 0.0079 15.9 0.1 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_34 PF13601.1 gi|433592615|ref|YP_007282111.1| - 0.058 13.4 0.0 0.072 13.1 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF950 PF06106.6 gi|433592615|ref|YP_007282111.1| - 0.084 12.9 0.0 0.1 12.6 0.0 1.2 1 0 0 1 1 1 0 Staphylococcus protein of unknown function (DUF950) FUR PF01475.14 gi|433592615|ref|YP_007282111.1| - 0.11 12.4 0.0 0.13 12.1 0.0 1.1 1 0 0 1 1 1 0 Ferric uptake regulator family Lactamase_B PF00753.22 gi|433592616|ref|YP_007282112.1| - 1.8e-11 44.0 4.4 3.2e-11 43.2 2.4 1.9 2 1 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|433592616|ref|YP_007282112.1| - 4.3e-07 29.6 0.2 3.5e-05 23.4 0.0 2.3 1 1 1 2 2 2 2 Beta-lactamase superfamily domain RMMBL PF07521.7 gi|433592616|ref|YP_007282112.1| - 1.8e-05 24.4 1.5 3.5e-05 23.5 0.2 2.2 2 0 0 2 2 2 1 RNA-metabolising metallo-beta-lactamase KGG PF10685.4 gi|433592616|ref|YP_007282112.1| - 0.22 11.5 1.0 6.9 6.7 0.1 2.4 2 0 0 2 2 2 0 Stress-induced bacterial acidophilic repeat motif Spore_YabQ PF09578.5 gi|433592617|ref|YP_007282113.1| - 0.0044 16.9 2.3 0.0044 16.9 1.6 2.7 2 2 1 3 3 3 1 Spore cortex protein YabQ (Spore_YabQ) PTPS_related PF10131.4 gi|433592617|ref|YP_007282113.1| - 0.093 10.8 14.1 0.0081 14.3 6.4 1.6 1 1 0 1 1 1 0 6-pyruvoyl-tetrahydropterin synthase related domain; membrane protein UPF0233 PF06781.7 gi|433592618|ref|YP_007282114.1| - 2.1 8.0 6.0 2.2 7.9 3.3 1.5 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0233) MoCF_biosynth PF00994.19 gi|433592619|ref|YP_007282115.1| - 7.4e-29 100.0 0.0 9.1e-29 99.7 0.0 1.1 1 0 0 1 1 1 1 Probable molybdopterin binding domain tRNA_NucTransf2 PF09249.6 gi|433592620|ref|YP_007282116.1| - 2.3e-43 146.7 0.0 4.4e-43 145.7 0.0 1.5 1 0 0 1 1 1 1 tRNA nucleotidyltransferase, second domain NTP_transf_2 PF01909.18 gi|433592620|ref|YP_007282116.1| - 6.2e-12 45.6 0.0 1.3e-11 44.6 0.0 1.5 1 0 0 1 1 1 1 Nucleotidyltransferase domain Hist_deacetyl PF00850.14 gi|433592621|ref|YP_007282117.1| - 4.1e-85 285.7 0.0 5.1e-85 285.4 0.0 1.0 1 0 0 1 1 1 1 Histone deacetylase domain CBFD_NFYB_HMF PF00808.18 gi|433592622|ref|YP_007282118.1| - 1.2e-26 92.5 0.2 2.4e-13 49.9 0.0 2.1 2 0 0 2 2 2 2 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Histone PF00125.19 gi|433592622|ref|YP_007282118.1| - 4.1e-18 65.2 0.1 1.2e-11 44.5 0.0 2.1 2 0 0 2 2 2 2 Core histone H2A/H2B/H3/H4 CENP-S PF15630.1 gi|433592622|ref|YP_007282118.1| - 0.00024 21.2 0.7 0.00045 20.3 0.1 1.7 2 0 0 2 2 2 1 Kinetochore component CENP-S TAF PF02969.12 gi|433592622|ref|YP_007282118.1| - 0.12 12.2 2.4 0.9 9.5 0.2 2.3 2 0 0 2 2 2 0 TATA box binding protein associated factor (TAF) TFIID_20kDa PF03847.8 gi|433592622|ref|YP_007282118.1| - 0.14 12.4 1.9 0.15 12.3 0.3 1.8 2 1 1 3 3 3 0 Transcription initiation factor TFIID subunit A DUF1931 PF09123.6 gi|433592622|ref|YP_007282118.1| - 0.14 12.0 1.0 0.61 10.0 0.2 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF1931) tRNA_anti-codon PF01336.20 gi|433592623|ref|YP_007282119.1| - 2.4e-30 104.1 5.4 2e-12 46.7 0.1 3.6 3 0 0 3 3 3 3 OB-fold nucleic acid binding domain Rep_fac-A_C PF08646.5 gi|433592623|ref|YP_007282119.1| - 0.00024 20.8 0.0 0.86 9.3 0.0 3.2 3 0 0 3 3 3 2 Replication factor-A C terminal domain SSB PF00436.20 gi|433592623|ref|YP_007282119.1| - 0.0091 15.8 0.1 17 5.3 0.0 3.4 3 0 0 3 3 3 1 Single-strand binding protein family DUF2771 PF10969.3 gi|433592623|ref|YP_007282119.1| - 0.066 12.4 0.2 0.15 11.3 0.2 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2771) TGS PF02824.16 gi|433592623|ref|YP_007282119.1| - 0.096 12.5 1.4 3.5 7.5 0.0 3.1 3 0 0 3 3 3 0 TGS domain DUF1352 PF07086.7 gi|433592624|ref|YP_007282120.1| - 0.096 12.3 0.0 0.16 11.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1352) DUF3792 PF12670.2 gi|433592624|ref|YP_007282120.1| - 0.49 10.2 6.7 0.27 11.0 0.9 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3792) DUF1275 PF06912.6 gi|433592624|ref|YP_007282120.1| - 1.2 8.3 10.8 0.48 9.5 0.6 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1275) Antimicrobial10 PF08105.6 gi|433592624|ref|YP_007282120.1| - 5 6.8 5.6 6 6.5 0.9 2.5 2 0 0 2 2 2 0 Metchnikowin family AMMECR1 PF01871.12 gi|433592625|ref|YP_007282121.1| - 9.7e-48 161.5 0.0 1.1e-47 161.2 0.0 1.0 1 0 0 1 1 1 1 AMMECR1 QRPTase_C PF01729.14 gi|433592626|ref|YP_007282122.1| - 9.2e-16 57.8 0.0 1.3e-15 57.3 0.0 1.2 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.11 gi|433592626|ref|YP_007282122.1| - 0.00011 21.9 0.0 0.00038 20.2 0.0 2.0 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain Peptidase_MA_2 PF13485.1 gi|433592627|ref|YP_007282123.1| - 2.5e-05 24.2 0.0 6.5e-05 22.9 0.0 1.7 1 0 0 1 1 1 1 Peptidase MA superfamily DUF4157 PF13699.1 gi|433592627|ref|YP_007282123.1| - 0.04 14.0 0.0 0.078 13.1 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4157) Peptidase_MA_2 PF13485.1 gi|433592628|ref|YP_007282124.1| - 5.1e-05 23.3 0.0 0.00013 22.0 0.0 1.7 1 0 0 1 1 1 1 Peptidase MA superfamily Peptidase_M76 PF09768.4 gi|433592628|ref|YP_007282124.1| - 0.00034 20.1 0.0 0.00054 19.4 0.0 1.2 1 0 0 1 1 1 1 Peptidase M76 family DUF955 PF06114.8 gi|433592628|ref|YP_007282124.1| - 0.1 12.3 0.0 0.17 11.5 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF955) Isochorismatase PF00857.15 gi|433592629|ref|YP_007282125.1| - 5.2e-51 173.0 0.0 5.7e-51 172.8 0.0 1.0 1 0 0 1 1 1 1 Isochorismatase family DUF998 PF06197.8 gi|433592630|ref|YP_007282126.1| - 0.052 12.8 2.5 0.056 12.7 1.7 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF998) 4HBT PF03061.17 gi|433592632|ref|YP_007282128.1| - 5.9e-13 48.7 0.2 1.2e-12 47.7 0.1 1.5 2 0 0 2 2 2 1 Thioesterase superfamily DUF4442 PF14539.1 gi|433592632|ref|YP_007282128.1| - 0.0001 22.2 0.0 0.00017 21.5 0.0 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF4442) Peptidase_M23 PF01551.17 gi|433592633|ref|YP_007282129.1| - 0.012 15.6 0.0 0.023 14.7 0.0 1.5 1 0 0 1 1 1 0 Peptidase family M23 BPL_LplA_LipB PF03099.14 gi|433592634|ref|YP_007282130.1| - 0.00032 20.7 0.0 0.00047 20.1 0.0 1.2 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family Ank_3 PF13606.1 gi|433592636|ref|YP_007282132.1| - 0.011 15.8 0.0 0.036 14.3 0.0 1.8 2 0 0 2 2 2 0 Ankyrin repeat QRPTase_C PF01729.14 gi|433592637|ref|YP_007282133.1| - 1.6e-54 183.9 2.0 2e-54 183.6 1.4 1.1 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.11 gi|433592637|ref|YP_007282133.1| - 3.4e-20 71.6 0.1 6.1e-20 70.8 0.1 1.4 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain MFS_1 PF07690.11 gi|433592638|ref|YP_007282134.1| - 1.7e-44 152.0 71.9 8.2e-33 113.5 32.4 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily RepL PF05732.6 gi|433592638|ref|YP_007282134.1| - 0.19 10.9 0.0 0.35 10.0 0.0 1.3 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) DUF373 PF04123.8 gi|433592638|ref|YP_007282134.1| - 1.2 8.0 17.0 0.021 13.8 5.8 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF373) FAD_binding_2 PF00890.19 gi|433592639|ref|YP_007282135.1| - 1.8e-77 260.9 5.5 2.2e-77 260.6 3.8 1.1 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.9 gi|433592639|ref|YP_007282135.1| - 5e-12 46.1 4.0 5.6e-11 42.6 2.8 3.0 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|433592639|ref|YP_007282135.1| - 8.1e-12 44.6 0.1 5e-09 35.5 0.0 2.5 2 0 0 2 2 2 2 FAD dependent oxidoreductase GIDA PF01134.17 gi|433592639|ref|YP_007282135.1| - 1.8e-10 40.2 0.3 8.4e-07 28.1 0.3 2.3 2 0 0 2 2 2 2 Glucose inhibited division protein A FAD_oxidored PF12831.2 gi|433592639|ref|YP_007282135.1| - 7.4e-09 35.1 4.8 2.7e-08 33.3 1.2 2.2 2 0 0 2 2 2 1 FAD dependent oxidoreductase Succ_DH_flav_C PF02910.15 gi|433592639|ref|YP_007282135.1| - 1.2e-06 28.3 0.1 2.7e-06 27.2 0.0 1.5 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term HI0933_like PF03486.9 gi|433592639|ref|YP_007282135.1| - 2.2e-06 26.3 0.1 0.0023 16.4 0.2 2.2 2 0 0 2 2 2 2 HI0933-like protein NAD_binding_8 PF13450.1 gi|433592639|ref|YP_007282135.1| - 0.00053 19.9 0.3 0.0016 18.4 0.2 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.14 gi|433592639|ref|YP_007282135.1| - 0.0029 16.7 0.1 0.0059 15.7 0.1 1.5 1 0 0 1 1 1 1 FAD binding domain Thi4 PF01946.12 gi|433592639|ref|YP_007282135.1| - 0.034 13.2 0.1 0.093 11.8 0.1 1.8 2 0 0 2 2 2 0 Thi4 family Lycopene_cycl PF05834.7 gi|433592639|ref|YP_007282135.1| - 0.034 13.0 0.4 0.064 12.1 0.3 1.4 1 0 0 1 1 1 0 Lycopene cyclase protein DUF1320 PF07030.7 gi|433592639|ref|YP_007282135.1| - 0.096 12.4 2.3 4.7 6.9 0.1 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1320) Pyr_redox PF00070.22 gi|433592639|ref|YP_007282135.1| - 0.097 13.0 0.0 0.28 11.6 0.0 1.8 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase HEAT_2 PF13646.1 gi|433592639|ref|YP_007282135.1| - 0.1 12.8 1.2 2.1 8.6 0.1 2.5 2 0 0 2 2 2 0 HEAT repeats NadA PF02445.11 gi|433592640|ref|YP_007282136.1| - 6.3e-102 340.3 0.0 7.3e-102 340.1 0.0 1.0 1 0 0 1 1 1 1 Quinolinate synthetase A protein GFO_IDH_MocA PF01408.17 gi|433592641|ref|YP_007282137.1| - 3e-26 92.2 0.1 4.9e-26 91.5 0.1 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|433592641|ref|YP_007282137.1| - 4.5e-13 48.9 0.0 9.1e-13 48.0 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain Semialdhyde_dh PF01118.19 gi|433592641|ref|YP_007282137.1| - 0.0028 17.9 0.0 0.0075 16.5 0.0 1.7 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|433592641|ref|YP_007282137.1| - 0.068 13.6 0.0 0.15 12.4 0.0 1.6 1 1 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent Bac_luciferase PF00296.15 gi|433592642|ref|YP_007282138.1| - 2e-65 220.9 15.3 2.4e-65 220.6 10.6 1.0 1 0 0 1 1 1 1 Luciferase-like monooxygenase OPT PF03169.10 gi|433592643|ref|YP_007282139.1| - 0.14 10.5 3.7 0.15 10.4 2.6 1.0 1 0 0 1 1 1 0 OPT oligopeptide transporter protein DUF4131 PF13567.1 gi|433592643|ref|YP_007282139.1| - 3.8 6.8 7.1 11 5.4 5.0 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4131) DUF2964 PF11177.3 gi|433592643|ref|YP_007282139.1| - 9.8 6.1 12.2 5 7.1 2.5 2.7 2 2 0 2 2 2 0 Protein of unknown function (DUF2964) HMG-CoA_red PF00368.13 gi|433592644|ref|YP_007282140.1| - 4.1e-137 456.8 4.6 4.7e-137 456.6 3.2 1.0 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A reductase HATPase_c PF02518.21 gi|433592645|ref|YP_007282141.1| - 9.9e-18 63.8 0.0 2.3e-17 62.7 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.1 gi|433592645|ref|YP_007282141.1| - 2.1e-07 30.7 0.1 4.2e-07 29.7 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.1 gi|433592645|ref|YP_007282141.1| - 3e-05 23.6 0.0 5.1e-05 22.9 0.0 1.3 1 0 0 1 1 1 1 GHKL domain HisKA PF00512.20 gi|433592645|ref|YP_007282141.1| - 6e-05 22.9 0.0 0.00016 21.6 0.0 1.7 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c_3 PF13589.1 gi|433592645|ref|YP_007282141.1| - 0.042 13.5 0.0 0.072 12.7 0.0 1.3 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HypA PF01155.14 gi|433592646|ref|YP_007282142.1| - 0.028 14.1 0.9 0.094 12.4 0.5 1.9 2 0 0 2 2 2 0 Hydrogenase expression/synthesis hypA family TerY-C PF15616.1 gi|433592646|ref|YP_007282142.1| - 0.029 14.3 0.4 0.04 13.8 0.3 1.2 1 0 0 1 1 1 0 TerY-C metal binding domain GntR PF00392.16 gi|433592646|ref|YP_007282142.1| - 0.034 13.5 0.2 0.14 11.6 0.1 2.1 2 1 0 2 2 2 0 Bacterial regulatory proteins, gntR family Rrf2 PF02082.15 gi|433592646|ref|YP_007282142.1| - 0.07 13.2 0.0 0.13 12.3 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator P22_AR_C PF10548.4 gi|433592646|ref|YP_007282142.1| - 0.084 12.7 0.0 0.14 12.0 0.0 1.2 1 0 0 1 1 1 0 P22AR C-terminal domain Zn-ribbon_8 PF09723.5 gi|433592646|ref|YP_007282142.1| - 0.1 12.6 1.3 0.27 11.2 0.9 1.8 1 0 0 1 1 1 0 Zinc ribbon domain TFIIS_C PF01096.13 gi|433592646|ref|YP_007282142.1| - 0.11 12.1 2.7 0.72 9.5 0.3 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zinc_ribbon_5 PF13719.1 gi|433592646|ref|YP_007282142.1| - 0.12 12.0 2.3 8.7 6.0 0.2 2.6 2 0 0 2 2 2 0 zinc-ribbon domain RNA_POL_M_15KD PF02150.11 gi|433592646|ref|YP_007282142.1| - 0.14 11.9 1.0 0.26 10.9 0.7 1.4 1 0 0 1 1 1 0 RNA polymerases M/15 Kd subunit zinc_ribbon_4 PF13717.1 gi|433592646|ref|YP_007282142.1| - 0.15 11.8 2.3 10 5.9 0.2 2.5 2 0 0 2 2 2 0 zinc-ribbon domain PhnA_Zn_Ribbon PF08274.7 gi|433592646|ref|YP_007282142.1| - 0.15 11.8 0.5 5.2 6.9 0.0 2.2 2 0 0 2 2 2 0 PhnA Zinc-Ribbon zf-CSL PF05207.8 gi|433592646|ref|YP_007282142.1| - 0.36 10.3 1.6 8.2 6.0 0.2 2.5 2 0 0 2 2 2 0 CSL zinc finger Zn_Tnp_IS1595 PF12760.2 gi|433592646|ref|YP_007282142.1| - 0.98 9.2 3.9 0.41 10.5 0.4 2.0 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Multi_Drug_Res PF00893.14 gi|433592647|ref|YP_007282143.1| - 9.2e-28 96.5 1.8 1.2e-27 96.2 1.3 1.1 1 0 0 1 1 1 1 Small Multidrug Resistance protein EmrE PF13536.1 gi|433592647|ref|YP_007282143.1| - 6.4e-08 32.7 5.8 7.9e-08 32.4 4.0 1.2 1 0 0 1 1 1 1 Multidrug resistance efflux transporter EamA PF00892.15 gi|433592647|ref|YP_007282143.1| - 0.0015 18.5 7.8 0.0017 18.3 5.4 1.2 1 0 0 1 1 1 1 EamA-like transporter family TPT PF03151.11 gi|433592647|ref|YP_007282143.1| - 0.033 13.8 3.3 0.093 12.3 2.3 1.8 1 1 0 1 1 1 0 Triose-phosphate Transporter family DUF4233 PF14017.1 gi|433592647|ref|YP_007282143.1| - 3.7 7.5 8.6 17 5.3 5.9 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF4233) Cupin_2 PF07883.6 gi|433592648|ref|YP_007282144.1| - 1e-16 60.1 0.8 1.4e-16 59.7 0.6 1.2 1 0 0 1 1 1 1 Cupin domain Cupin_1 PF00190.17 gi|433592648|ref|YP_007282144.1| - 9.8e-05 21.8 0.0 0.00011 21.6 0.0 1.1 1 0 0 1 1 1 1 Cupin AraC_binding PF02311.14 gi|433592648|ref|YP_007282144.1| - 0.00052 19.7 0.4 0.00073 19.2 0.3 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain ARD PF03079.9 gi|433592648|ref|YP_007282144.1| - 0.0051 16.7 0.0 0.006 16.5 0.0 1.1 1 0 0 1 1 1 1 ARD/ARD' family Shal-type PF11601.3 gi|433592649|ref|YP_007282145.1| - 0.12 11.9 0.9 0.18 11.3 0.6 1.3 1 0 0 1 1 1 0 Shal-type voltage-gated potassium channels Acetyltransf_1 PF00583.19 gi|433592650|ref|YP_007282146.1| - 7.6e-14 51.5 0.1 1.1e-13 51.0 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|433592650|ref|YP_007282146.1| - 8.8e-13 48.4 0.1 1e-12 48.1 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|433592650|ref|YP_007282146.1| - 3.3e-12 46.3 0.0 4.4e-12 45.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_5 PF13444.1 gi|433592650|ref|YP_007282146.1| - 3.9e-06 27.3 0.4 6.6e-06 26.6 0.3 1.7 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|433592650|ref|YP_007282146.1| - 6.5e-05 22.7 0.2 0.0002 21.2 0.1 1.8 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|433592650|ref|YP_007282146.1| - 7.2e-05 22.7 0.0 9.3e-05 22.4 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|433592650|ref|YP_007282146.1| - 0.00033 20.3 0.0 0.00047 19.8 0.0 1.2 1 0 0 1 1 1 1 FR47-like protein DUF3749 PF12568.3 gi|433592650|ref|YP_007282146.1| - 0.069 12.7 0.1 0.088 12.3 0.1 1.3 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Iso_dh PF00180.15 gi|433592651|ref|YP_007282147.1| - 3e-110 368.4 0.0 3.6e-110 368.1 0.0 1.1 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase Peptidase_M24 PF00557.19 gi|433592653|ref|YP_007282149.1| - 2.1e-44 151.5 0.5 2.8e-44 151.1 0.3 1.2 1 0 0 1 1 1 1 Metallopeptidase family M24 NOB1_Zn_bind PF08772.6 gi|433592654|ref|YP_007282150.1| - 0.0058 16.4 1.7 0.19 11.6 0.0 2.1 1 1 1 2 2 2 2 Nin one binding (NOB1) Zn-ribbon like DAN PF03045.10 gi|433592654|ref|YP_007282150.1| - 0.039 13.3 1.4 0.042 13.2 1.0 1.1 1 0 0 1 1 1 0 DAN domain TFIIS_C PF01096.13 gi|433592654|ref|YP_007282150.1| - 0.053 13.1 1.0 6.6 6.4 0.0 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) RecR PF02132.10 gi|433592654|ref|YP_007282150.1| - 0.17 11.3 1.9 0.64 9.4 0.1 2.1 2 0 0 2 2 2 0 RecR protein FdhD-NarQ PF02634.10 gi|433592654|ref|YP_007282150.1| - 0.17 11.3 0.7 0.17 11.2 0.5 1.0 1 0 0 1 1 1 0 FdhD/NarQ family zf-DNL PF05180.7 gi|433592654|ref|YP_007282150.1| - 0.27 10.9 3.7 3.2 7.5 0.5 2.3 1 1 0 2 2 2 0 DNL zinc finger HIT PF01230.18 gi|433592655|ref|YP_007282151.1| - 2.4e-11 44.0 0.0 3.6e-11 43.4 0.0 1.2 1 0 0 1 1 1 1 HIT domain CwfJ_C_1 PF04677.10 gi|433592655|ref|YP_007282151.1| - 7.3e-05 22.4 0.0 0.00012 21.7 0.0 1.3 1 0 0 1 1 1 1 Protein similar to CwfJ C-terminus 1 DcpS_C PF11969.3 gi|433592655|ref|YP_007282151.1| - 0.0053 16.9 0.3 0.01 16.0 0.2 1.5 1 1 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding Cupin_2 PF07883.6 gi|433592656|ref|YP_007282152.1| - 2e-14 52.8 1.0 2e-14 52.8 0.7 1.5 2 0 0 2 2 2 1 Cupin domain Cupin_7 PF12973.2 gi|433592656|ref|YP_007282152.1| - 1.2e-05 25.0 0.1 1.7e-05 24.5 0.1 1.4 1 1 0 1 1 1 1 ChrR Cupin-like domain 3-HAO PF06052.7 gi|433592656|ref|YP_007282152.1| - 0.0019 17.6 0.0 0.0025 17.2 0.0 1.2 1 0 0 1 1 1 1 3-hydroxyanthranilic acid dioxygenase Cupin_1 PF00190.17 gi|433592656|ref|YP_007282152.1| - 0.0076 15.6 0.0 0.0098 15.3 0.0 1.1 1 0 0 1 1 1 1 Cupin Cupin_3 PF05899.7 gi|433592656|ref|YP_007282152.1| - 0.0099 15.2 0.1 0.014 14.7 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF861) Glutaredoxin PF00462.19 gi|433592657|ref|YP_007282153.1| - 1.1e-13 50.9 0.0 1.4e-13 50.5 0.0 1.2 1 0 0 1 1 1 1 Glutaredoxin GST_N_3 PF13417.1 gi|433592657|ref|YP_007282153.1| - 4.7e-13 49.1 0.0 5.2e-13 49.0 0.0 1.0 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N_2 PF13409.1 gi|433592657|ref|YP_007282153.1| - 2e-08 34.0 0.0 2.3e-08 33.8 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain DUF836 PF05768.9 gi|433592657|ref|YP_007282153.1| - 0.0011 19.2 0.2 0.0013 18.8 0.1 1.3 1 1 0 1 1 1 1 Glutaredoxin-like domain (DUF836) GST_N PF02798.15 gi|433592657|ref|YP_007282153.1| - 0.011 15.8 0.0 0.013 15.7 0.0 1.1 1 0 0 1 1 1 0 Glutathione S-transferase, N-terminal domain Sof1 PF04158.9 gi|433592657|ref|YP_007282153.1| - 0.036 14.0 0.0 0.04 13.9 0.0 1.1 1 0 0 1 1 1 0 Sof1-like domain AhpC-TSA PF00578.16 gi|433592658|ref|YP_007282154.1| - 1.1e-11 44.5 0.0 1.3e-11 44.3 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|433592658|ref|YP_007282154.1| - 0.0004 19.9 0.0 0.0012 18.3 0.0 1.8 1 1 0 1 1 1 1 Redoxin HTH_20 PF12840.2 gi|433592659|ref|YP_007282155.1| - 1.1e-09 37.8 0.0 2.2e-09 36.9 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|433592659|ref|YP_007282155.1| - 5.1e-08 32.3 0.0 8.3e-08 31.7 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.14 gi|433592659|ref|YP_007282155.1| - 5.4e-08 32.4 0.0 7.5e-08 31.9 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|433592659|ref|YP_007282155.1| - 4.2e-07 29.5 0.0 7.4e-07 28.7 0.0 1.5 1 1 0 1 1 1 1 MarR family HTH_5 PF01022.15 gi|433592659|ref|YP_007282155.1| - 3e-06 26.7 0.0 5.3e-06 25.9 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Sigma70_r4 PF04545.11 gi|433592659|ref|YP_007282155.1| - 2.3e-05 23.5 0.0 0.00038 19.7 0.0 2.2 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_24 PF13412.1 gi|433592659|ref|YP_007282155.1| - 5.8e-05 22.4 0.0 9.1e-05 21.7 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_29 PF13551.1 gi|433592659|ref|YP_007282155.1| - 0.00013 22.1 0.0 0.00018 21.5 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn helix MarR PF01047.17 gi|433592659|ref|YP_007282155.1| - 0.0002 20.9 0.0 0.00033 20.3 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.7 gi|433592659|ref|YP_007282155.1| - 0.00059 19.4 0.0 0.00089 18.8 0.0 1.3 1 0 0 1 1 1 1 HTH domain Sigma70_r4_2 PF08281.7 gi|433592659|ref|YP_007282155.1| - 0.0014 18.0 0.1 0.0049 16.2 0.0 1.8 2 0 0 2 2 2 1 Sigma-70, region 4 DUF742 PF05331.6 gi|433592659|ref|YP_007282155.1| - 0.003 17.1 0.0 0.0037 16.8 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF742) HTH_23 PF13384.1 gi|433592659|ref|YP_007282155.1| - 0.0092 15.6 0.0 0.014 15.0 0.0 1.3 1 0 0 1 1 1 1 Homeodomain-like domain HTH_27 PF13463.1 gi|433592659|ref|YP_007282155.1| - 0.0098 16.2 0.0 0.015 15.6 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain Rrf2 PF02082.15 gi|433592659|ref|YP_007282155.1| - 0.011 15.8 0.0 0.014 15.5 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator Fe_dep_repress PF01325.14 gi|433592659|ref|YP_007282155.1| - 0.012 15.5 0.0 0.016 15.0 0.0 1.2 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_7 PF02796.10 gi|433592659|ref|YP_007282155.1| - 0.013 15.3 0.0 0.02 14.7 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase LexA_DNA_bind PF01726.11 gi|433592659|ref|YP_007282155.1| - 0.02 14.4 0.0 0.03 13.8 0.0 1.2 1 0 0 1 1 1 0 LexA DNA binding domain HTH_AsnC-type PF13404.1 gi|433592659|ref|YP_007282155.1| - 0.026 14.0 0.0 0.055 13.0 0.0 1.7 1 1 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_17 PF12728.2 gi|433592659|ref|YP_007282155.1| - 0.047 13.9 0.0 0.082 13.1 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_38 PF13936.1 gi|433592659|ref|YP_007282155.1| - 0.049 13.1 0.0 0.087 12.3 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain TetR_N PF00440.18 gi|433592659|ref|YP_007282155.1| - 0.05 13.2 0.0 0.08 12.5 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family PadR PF03551.9 gi|433592659|ref|YP_007282155.1| - 0.06 13.1 0.1 0.095 12.4 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family IF2_N PF04760.10 gi|433592659|ref|YP_007282155.1| - 0.061 12.9 0.0 5 6.8 0.0 2.3 2 1 0 2 2 2 0 Translation initiation factor IF-2, N-terminal region FUR PF01475.14 gi|433592659|ref|YP_007282155.1| - 0.09 12.7 0.0 0.13 12.1 0.0 1.3 1 1 0 1 1 1 0 Ferric uptake regulator family HTH_DeoR PF08220.7 gi|433592659|ref|YP_007282155.1| - 0.14 11.7 0.0 0.22 11.0 0.0 1.3 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_Tnp_1 PF01527.15 gi|433592659|ref|YP_007282155.1| - 0.14 12.0 0.0 0.19 11.7 0.0 1.2 1 0 0 1 1 1 0 Transposase Radical_SAM PF04055.16 gi|433592660|ref|YP_007282156.1| - 7.4e-24 84.7 0.2 1.9e-23 83.4 0.0 1.8 2 0 0 2 2 2 1 Radical SAM superfamily UPF0004 PF00919.15 gi|433592660|ref|YP_007282156.1| - 1.1e-19 70.0 0.1 2.5e-19 68.8 0.0 1.6 1 0 0 1 1 1 1 Uncharacterized protein family UPF0004 TRAM PF01938.15 gi|433592660|ref|YP_007282156.1| - 0.059 13.1 0.0 0.13 12.0 0.0 1.6 1 0 0 1 1 1 0 TRAM domain PSK_trans_fac PF07704.6 gi|433592661|ref|YP_007282157.1| - 0.13 12.9 2.4 0.14 12.8 0.8 1.7 2 1 0 2 2 2 0 Rv0623-like transcription factor 7TMR-DISM_7TM PF07695.6 gi|433592662|ref|YP_007282158.1| - 0.067 12.8 5.6 0.088 12.4 3.9 1.2 1 0 0 1 1 1 0 7TM diverse intracellular signalling COX15-CtaA PF02628.10 gi|433592662|ref|YP_007282158.1| - 0.23 10.3 8.4 0.27 10.0 5.8 1.2 1 0 0 1 1 1 0 Cytochrome oxidase assembly protein DUF3995 PF13160.1 gi|433592662|ref|YP_007282158.1| - 4.9 7.2 13.2 14 5.7 7.1 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3995) MARVEL PF01284.18 gi|433592662|ref|YP_007282158.1| - 7.2 6.4 8.1 13 5.6 5.6 1.4 1 1 0 1 1 1 0 Membrane-associating domain CSD PF00313.17 gi|433592663|ref|YP_007282159.1| - 1.4e-18 66.3 0.2 1.6e-18 66.2 0.1 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain S1-like PF14444.1 gi|433592663|ref|YP_007282159.1| - 0.014 15.1 0.2 0.017 14.8 0.1 1.3 1 1 0 1 1 1 0 S1-like OB_RNB PF08206.6 gi|433592663|ref|YP_007282159.1| - 0.062 12.8 2.8 0.089 12.3 1.9 1.3 1 0 0 1 1 1 0 Ribonuclease B OB domain HTH_20 PF12840.2 gi|433592664|ref|YP_007282160.1| - 7.1e-10 38.5 1.5 7e-06 25.7 0.2 2.2 2 0 0 2 2 2 2 Helix-turn-helix domain MarR_2 PF12802.2 gi|433592664|ref|YP_007282160.1| - 1.8e-09 37.0 1.1 7.1e-06 25.5 0.3 2.4 2 0 0 2 2 2 2 MarR family HTH_24 PF13412.1 gi|433592664|ref|YP_007282160.1| - 1.2e-06 27.8 0.0 0.0015 17.8 0.0 2.2 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|433592664|ref|YP_007282160.1| - 1.2e-06 28.0 0.0 3.2e-05 23.5 0.0 2.2 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_27 PF13463.1 gi|433592664|ref|YP_007282160.1| - 0.0001 22.5 0.1 0.013 15.7 0.1 2.4 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_IclR PF09339.5 gi|433592664|ref|YP_007282160.1| - 0.00058 19.4 0.0 0.0017 17.9 0.0 1.7 2 0 0 2 2 2 1 IclR helix-turn-helix domain MarR PF01047.17 gi|433592664|ref|YP_007282160.1| - 0.0013 18.3 0.0 0.0066 16.1 0.0 2.0 2 0 0 2 2 2 1 MarR family TrmB PF01978.14 gi|433592664|ref|YP_007282160.1| - 0.0016 18.1 0.0 0.012 15.3 0.0 2.0 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_10 PF04967.7 gi|433592664|ref|YP_007282160.1| - 0.0027 17.2 0.0 0.017 14.6 0.0 2.1 2 0 0 2 2 2 1 HTH DNA binding domain HTH_34 PF13601.1 gi|433592664|ref|YP_007282160.1| - 0.045 13.7 0.0 0.23 11.4 0.0 1.9 2 0 0 2 2 2 0 Winged helix DNA-binding domain GerE PF00196.14 gi|433592664|ref|YP_007282160.1| - 0.096 12.0 0.0 0.2 11.0 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family UPF0118 PF01594.11 gi|433592665|ref|YP_007282161.1| - 1.9e-50 171.7 24.0 2.3e-50 171.4 16.6 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF20 UPF0233 PF06781.7 gi|433592665|ref|YP_007282161.1| - 0.03 13.9 0.0 0.03 13.9 0.0 3.5 4 0 0 4 4 4 0 Uncharacterised protein family (UPF0233) DUF547 PF04784.9 gi|433592666|ref|YP_007282162.1| - 1.4e-21 76.5 0.0 2e-21 76.0 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF547 DUF1508 PF07411.7 gi|433592667|ref|YP_007282163.1| - 1.9e-15 56.0 0.1 2.9e-15 55.4 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1508) DZR PF12773.2 gi|433592668|ref|YP_007282164.1| - 0.0076 16.0 2.8 0.58 10.0 0.1 2.5 2 1 0 2 2 2 2 Double zinc ribbon Lar_restr_allev PF14354.1 gi|433592668|ref|YP_007282164.1| - 0.6 10.4 5.7 0.35 11.2 0.1 2.6 2 1 0 2 2 2 0 Restriction alleviation protein Lar DUF3407 PF11887.3 gi|433592668|ref|YP_007282164.1| - 0.8 8.9 5.9 0.9 8.7 0.2 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3407) PNP_UDP_1 PF01048.15 gi|433592669|ref|YP_007282165.1| - 1.7e-44 151.5 4.1 2.1e-44 151.2 2.8 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily PfkB PF00294.19 gi|433592671|ref|YP_007282167.1| - 3.4e-49 167.6 5.0 4.6e-49 167.1 3.5 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Glyoxalase PF00903.20 gi|433592671|ref|YP_007282167.1| - 0.11 12.5 0.0 0.22 11.5 0.0 1.6 1 0 0 1 1 1 0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DUF63 PF01889.12 gi|433592672|ref|YP_007282168.1| - 1.4e-16 61.3 12.7 1.9e-16 60.9 8.8 1.1 1 0 0 1 1 1 1 Membrane protein of unknown function DUF63 IF-2B PF01008.12 gi|433592673|ref|YP_007282169.1| - 1.8e-71 240.4 0.0 2.1e-71 240.2 0.0 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family PEP-utilizers PF00391.18 gi|433592673|ref|YP_007282169.1| - 0.0042 16.6 0.3 0.32 10.5 0.2 3.1 2 1 1 3 3 3 1 PEP-utilising enzyme, mobile domain HTH_29 PF13551.1 gi|433592673|ref|YP_007282169.1| - 0.095 12.8 1.1 18 5.5 0.0 3.2 3 0 0 3 3 3 0 Winged helix-turn helix DUF2849 PF11011.3 gi|433592673|ref|YP_007282169.1| - 0.47 10.7 10.3 3 8.1 1.3 3.3 4 1 0 4 4 4 0 Protein of unknown function (DUF2849) SecD_SecF PF02355.11 gi|433592675|ref|YP_007282171.1| - 6.4e-31 107.0 10.6 1e-30 106.3 7.3 1.3 1 0 0 1 1 1 1 Protein export membrane protein Sec_GG PF07549.9 gi|433592675|ref|YP_007282171.1| - 8.1e-06 24.7 0.0 2e-05 23.5 0.0 1.7 1 0 0 1 1 1 1 SecD/SecF GG Motif Patched PF02460.13 gi|433592675|ref|YP_007282171.1| - 1.3 6.8 13.6 2.5 5.9 9.4 1.4 1 1 0 1 1 1 0 Patched family SecD_SecF PF02355.11 gi|433592676|ref|YP_007282172.1| - 4.6e-13 48.7 4.5 4.6e-13 48.7 3.1 1.8 2 0 0 2 2 2 1 Protein export membrane protein Arteri_nucleo PF01481.11 gi|433592676|ref|YP_007282172.1| - 0.085 12.9 0.4 3.3 7.8 0.0 2.3 2 0 0 2 2 2 0 Arterivirus nucleocapsid protein ProSAAS PF07259.7 gi|433592677|ref|YP_007282173.1| - 10 5.6 14.0 19 4.6 6.2 2.9 1 1 1 2 2 2 0 ProSAAS precursor ECH PF00378.15 gi|433592678|ref|YP_007282174.1| - 8.9e-43 146.1 0.0 1.1e-42 145.9 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family Acetyltransf_3 PF13302.1 gi|433592679|ref|YP_007282175.1| - 2.2e-28 99.2 0.0 2.6e-28 98.9 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|433592679|ref|YP_007282175.1| - 7.8e-20 71.3 0.0 9.4e-20 71.1 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|433592679|ref|YP_007282175.1| - 1.6e-13 50.4 0.1 2.3e-13 49.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_8 PF13523.1 gi|433592679|ref|YP_007282175.1| - 2e-09 37.4 0.0 2.8e-09 37.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|433592679|ref|YP_007282175.1| - 0.0005 20.1 0.0 0.00075 19.6 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain NAD_synthase PF02540.12 gi|433592680|ref|YP_007282176.1| - 7.7e-82 273.8 0.0 8.9e-82 273.6 0.0 1.0 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.11 gi|433592680|ref|YP_007282176.1| - 1.8e-07 30.0 0.1 2e-05 23.3 0.0 2.2 2 0 0 2 2 2 2 tRNA methyl transferase HTH_Tnp_ISL3 PF13542.1 gi|433592680|ref|YP_007282176.1| - 9.1e-05 21.5 0.0 0.0031 16.6 0.0 3.0 2 1 1 3 3 3 1 Helix-turn-helix domain of transposase family ISL3 Asn_synthase PF00733.16 gi|433592680|ref|YP_007282176.1| - 0.0018 17.8 0.1 0.0027 17.2 0.0 1.3 1 0 0 1 1 1 1 Asparagine synthase HTH_23 PF13384.1 gi|433592680|ref|YP_007282176.1| - 0.0061 16.1 0.0 2.1 8.0 0.0 3.8 3 1 1 4 4 4 1 Homeodomain-like domain QueC PF06508.8 gi|433592680|ref|YP_007282176.1| - 0.01 15.0 0.0 0.032 13.4 0.0 1.7 2 0 0 2 2 2 0 Queuosine biosynthesis protein QueC HTH_28 PF13518.1 gi|433592680|ref|YP_007282176.1| - 0.036 14.0 0.0 4.7 7.3 0.0 3.6 3 1 1 4 4 4 0 Helix-turn-helix domain ThiI PF02568.9 gi|433592680|ref|YP_007282176.1| - 0.15 11.5 0.0 0.23 10.8 0.0 1.3 1 0 0 1 1 1 0 Thiamine biosynthesis protein (ThiI) TFIIB PF00382.14 gi|433592681|ref|YP_007282177.1| - 7.3e-46 153.8 2.8 1.3e-24 85.7 0.1 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|433592681|ref|YP_007282177.1| - 1.5e-11 43.4 1.5 1.5e-11 43.4 1.1 1.7 2 0 0 2 2 2 1 TFIIB zinc-binding Cyclin_N PF00134.18 gi|433592681|ref|YP_007282177.1| - 0.0032 17.0 0.1 0.067 12.7 0.0 2.3 1 1 0 2 2 2 1 Cyclin, N-terminal domain A2L_zn_ribbon PF08792.5 gi|433592681|ref|YP_007282177.1| - 0.021 14.2 1.7 0.048 13.1 1.2 1.6 1 0 0 1 1 1 0 A2L zinc ribbon domain Sigma70_r4 PF04545.11 gi|433592681|ref|YP_007282177.1| - 0.051 12.8 1.1 1.5 8.2 0.0 3.3 2 1 1 3 3 3 0 Sigma-70, region 4 RRN7 PF11781.3 gi|433592681|ref|YP_007282177.1| - 0.067 12.7 2.0 0.13 11.7 1.4 1.5 1 0 0 1 1 1 0 RNA polymerase I-specific transcription initiation factor Rrn7 DZR PF12773.2 gi|433592681|ref|YP_007282177.1| - 0.1 12.4 0.8 0.27 11.0 0.5 1.7 1 0 0 1 1 1 0 Double zinc ribbon SBP PF03110.9 gi|433592681|ref|YP_007282177.1| - 0.75 10.0 4.0 0.85 9.8 0.1 2.5 2 0 0 2 2 2 0 SBP domain HTH_23 PF13384.1 gi|433592681|ref|YP_007282177.1| - 0.78 9.4 5.9 2.1 8.0 0.0 3.0 3 0 0 3 3 3 0 Homeodomain-like domain ADK_lid PF05191.9 gi|433592681|ref|YP_007282177.1| - 0.99 9.1 3.4 4.8 6.9 0.2 2.5 2 0 0 2 2 2 0 Adenylate kinase, active site lid zf-NADH-PPase PF09297.6 gi|433592681|ref|YP_007282177.1| - 1.6 8.3 8.4 2.3 7.8 0.0 3.0 2 1 1 3 3 3 0 NADH pyrophosphatase zinc ribbon domain Usp PF00582.21 gi|433592683|ref|YP_007282179.1| - 2.4e-31 108.7 4.7 2.7e-31 108.6 3.3 1.0 1 0 0 1 1 1 1 Universal stress protein family DUF2953 PF11167.3 gi|433592684|ref|YP_007282180.1| - 0.036 13.9 1.5 0.036 13.9 1.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2953) KaiC PF06745.8 gi|433592686|ref|YP_007282182.1| - 7.8e-55 185.4 0.0 9.2e-55 185.2 0.0 1.1 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|433592686|ref|YP_007282182.1| - 8e-09 35.1 0.0 1.4e-08 34.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain GvpD PF07088.6 gi|433592686|ref|YP_007282182.1| - 0.00017 20.0 0.3 0.00031 19.2 0.2 1.3 1 1 0 1 1 1 1 GvpD gas vesicle protein DnaB_C PF03796.10 gi|433592686|ref|YP_007282182.1| - 0.00049 19.0 0.2 0.019 13.8 0.0 2.1 1 1 1 2 2 2 1 DnaB-like helicase C terminal domain RecA PF00154.16 gi|433592686|ref|YP_007282182.1| - 0.0072 15.4 0.0 0.054 12.5 0.0 1.9 2 0 0 2 2 2 1 recA bacterial DNA recombination protein AAA_24 PF13479.1 gi|433592686|ref|YP_007282182.1| - 0.011 15.3 0.0 0.028 13.9 0.0 1.6 1 1 0 1 1 1 0 AAA domain T2SE PF00437.15 gi|433592686|ref|YP_007282182.1| - 0.024 13.5 0.0 0.036 12.9 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein DUF2075 PF09848.4 gi|433592686|ref|YP_007282182.1| - 0.026 13.4 0.0 0.036 13.0 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) MEDS PF14417.1 gi|433592686|ref|YP_007282182.1| - 0.039 13.0 0.0 0.058 12.4 0.0 1.2 1 0 0 1 1 1 0 MEDS: MEthanogen/methylotroph, DcmR Sensory domain AAA_14 PF13173.1 gi|433592686|ref|YP_007282182.1| - 0.054 13.4 0.0 0.088 12.7 0.0 1.6 1 1 0 1 1 1 0 AAA domain Arch_ATPase PF01637.13 gi|433592686|ref|YP_007282182.1| - 0.098 12.3 0.0 0.19 11.4 0.0 1.4 1 1 0 1 1 1 0 Archaeal ATPase AAA_19 PF13245.1 gi|433592686|ref|YP_007282182.1| - 0.099 12.4 0.0 0.23 11.2 0.0 1.5 1 0 0 1 1 1 0 Part of AAA domain TrwB_AAD_bind PF10412.4 gi|433592686|ref|YP_007282182.1| - 0.11 11.1 0.0 0.19 10.3 0.0 1.3 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain IstB_IS21 PF01695.12 gi|433592686|ref|YP_007282182.1| - 0.14 11.5 0.0 0.31 10.4 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein PhoH PF02562.11 gi|433592686|ref|YP_007282182.1| - 0.16 11.2 0.0 0.25 10.5 0.0 1.2 1 0 0 1 1 1 0 PhoH-like protein AAA_22 PF13401.1 gi|433592686|ref|YP_007282182.1| - 0.16 12.0 0.0 0.26 11.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain NAD_kinase PF01513.16 gi|433592687|ref|YP_007282183.1| - 1.7e-37 128.7 0.5 2.4e-37 128.2 0.4 1.2 1 0 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.19 gi|433592687|ref|YP_007282183.1| - 0.0033 16.8 0.1 0.006 16.0 0.1 1.4 1 0 0 1 1 1 1 Diacylglycerol kinase catalytic domain DSBA PF01323.15 gi|433592688|ref|YP_007282184.1| - 5.9e-32 110.7 0.0 6.7e-32 110.6 0.0 1.0 1 0 0 1 1 1 1 DSBA-like thioredoxin domain Thioredoxin_4 PF13462.1 gi|433592688|ref|YP_007282184.1| - 2.1e-10 40.8 0.1 7e-08 32.6 0.0 2.2 2 0 0 2 2 2 2 Thioredoxin Thioredoxin_2 PF13098.1 gi|433592688|ref|YP_007282184.1| - 0.00035 20.7 0.1 0.00096 19.3 0.0 1.8 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_3 PF13192.1 gi|433592688|ref|YP_007282184.1| - 0.013 15.2 0.2 0.09 12.5 0.0 2.2 2 0 0 2 2 2 0 Thioredoxin domain Thioredoxin_5 PF13743.1 gi|433592688|ref|YP_007282184.1| - 0.1 12.1 0.0 3.5 7.1 0.0 2.1 2 0 0 2 2 2 0 Thioredoxin Glutaredoxin PF00462.19 gi|433592688|ref|YP_007282184.1| - 0.1 12.5 0.2 0.73 9.8 0.0 2.3 2 0 0 2 2 2 0 Glutaredoxin Nuc-transf PF10127.4 gi|433592690|ref|YP_007282186.1| - 1.6e-29 103.0 0.0 2.7e-29 102.2 0.0 1.4 1 1 0 1 1 1 1 Predicted nucleotidyltransferase Tenui_N PF05733.6 gi|433592690|ref|YP_007282186.1| - 0.12 11.7 0.0 0.19 11.0 0.0 1.3 1 0 0 1 1 1 0 Tenuivirus/Phlebovirus nucleocapsid protein GCHY-1 PF02649.9 gi|433592691|ref|YP_007282187.1| - 2.5e-86 289.3 0.7 2.8e-86 289.1 0.5 1.0 1 0 0 1 1 1 1 Type I GTP cyclohydrolase folE2 TrmB PF01978.14 gi|433592692|ref|YP_007282188.1| - 3.5e-20 71.4 0.1 6.6e-20 70.5 0.1 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Regulator_TrmB PF11495.3 gi|433592692|ref|YP_007282188.1| - 0.00036 19.5 0.0 0.00061 18.8 0.0 1.3 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB PadR PF03551.9 gi|433592692|ref|YP_007282188.1| - 0.023 14.4 0.0 0.048 13.4 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family HTH_9 PF08221.6 gi|433592692|ref|YP_007282188.1| - 0.064 13.1 0.0 0.12 12.2 0.0 1.3 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain RRM_6 PF14259.1 gi|433592692|ref|YP_007282188.1| - 0.15 12.0 0.0 0.52 10.3 0.0 1.8 2 0 0 2 2 2 0 RNA recognition motif (a.k.a. RRM, RBD, or RNP domain) Vir_act_alpha_C PF10400.4 gi|433592692|ref|YP_007282188.1| - 0.55 10.6 4.3 0.17 12.2 0.4 2.2 2 1 1 3 3 3 0 Virulence activator alpha C-term Thioredox_DsbH PF03190.10 gi|433592693|ref|YP_007282189.1| - 8.2e-30 103.6 0.0 1.4e-29 102.9 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF255 Thioredoxin_7 PF13899.1 gi|433592693|ref|YP_007282189.1| - 2.4e-12 46.6 0.0 5.3e-12 45.5 0.0 1.6 1 0 0 1 1 1 1 Thioredoxin-like Thioredoxin PF00085.15 gi|433592693|ref|YP_007282189.1| - 1e-08 34.8 0.0 1.7e-08 34.0 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|433592693|ref|YP_007282189.1| - 6.7e-08 32.7 0.0 4.1e-07 30.1 0.0 2.1 1 1 0 1 1 1 1 Thioredoxin-like domain Glyco_hydro_88 PF07470.8 gi|433592693|ref|YP_007282189.1| - 0.0025 16.9 0.4 1.8 7.4 0.0 2.9 3 0 0 3 3 3 2 Glycosyl Hydrolase Family 88 Thioredoxin_8 PF13905.1 gi|433592693|ref|YP_007282189.1| - 0.019 15.0 0.1 4.7 7.4 0.0 2.3 1 1 1 2 2 2 0 Thioredoxin-like Glyco_hydro_76 PF03663.9 gi|433592693|ref|YP_007282189.1| - 0.067 12.5 0.4 2.8 7.2 0.2 2.3 2 1 0 2 2 2 0 Glycosyl hydrolase family 76 FxsA PF04186.8 gi|433592694|ref|YP_007282190.1| - 1.5e-26 92.3 8.1 1.9e-26 92.0 5.6 1.1 1 0 0 1 1 1 1 FxsA cytoplasmic membrane protein BofA PF07441.6 gi|433592695|ref|YP_007282191.1| - 0.022 14.7 1.5 0.022 14.7 1.0 1.8 1 1 1 2 2 2 0 SigmaK-factor processing regulatory protein BofA DUF998 PF06197.8 gi|433592695|ref|YP_007282191.1| - 0.049 12.9 10.0 0.063 12.5 6.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF998) ABC2_membrane_3 PF12698.2 gi|433592695|ref|YP_007282191.1| - 6.1 5.7 7.8 7.6 5.4 5.4 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein DUF3006 PF11213.3 gi|433592696|ref|YP_007282192.1| - 0.002 17.8 1.7 0.0033 17.1 1.2 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF3006) IclR PF01614.13 gi|433592697|ref|YP_007282193.1| - 1.7e-33 115.0 0.1 4.9e-33 113.5 0.0 1.7 2 0 0 2 2 2 1 Bacterial transcriptional regulator HTH_IclR PF09339.5 gi|433592697|ref|YP_007282193.1| - 9.7e-14 50.6 0.1 2e-13 49.6 0.1 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|433592697|ref|YP_007282193.1| - 2.6e-09 36.6 0.1 5.4e-09 35.6 0.1 1.5 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|433592697|ref|YP_007282193.1| - 3.2e-09 36.4 0.0 5.7e-09 35.6 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|433592697|ref|YP_007282193.1| - 1.1e-08 34.2 0.0 1.9e-08 33.5 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|433592697|ref|YP_007282193.1| - 2e-07 30.5 0.0 4.1e-07 29.6 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.15 gi|433592697|ref|YP_007282193.1| - 2.6e-07 30.2 0.0 4.2e-07 29.5 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_11 PF08279.7 gi|433592697|ref|YP_007282193.1| - 3e-07 29.9 0.0 6.2e-07 28.9 0.0 1.6 1 0 0 1 1 1 1 HTH domain HTH_27 PF13463.1 gi|433592697|ref|YP_007282193.1| - 5.4e-05 23.4 0.1 0.00019 21.6 0.0 1.9 3 0 0 3 3 1 1 Winged helix DNA-binding domain MarR PF01047.17 gi|433592697|ref|YP_007282193.1| - 0.00035 20.2 0.0 0.00071 19.2 0.0 1.5 1 0 0 1 1 1 1 MarR family Rrf2 PF02082.15 gi|433592697|ref|YP_007282193.1| - 0.00044 20.3 0.0 0.001 19.1 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator RP-C PF03428.8 gi|433592697|ref|YP_007282193.1| - 0.006 16.0 0.0 0.011 15.2 0.0 1.5 1 0 0 1 1 1 1 Replication protein C N-terminal domain Mga PF05043.8 gi|433592697|ref|YP_007282193.1| - 0.0071 16.6 0.0 0.012 15.8 0.0 1.3 1 0 0 1 1 1 1 Mga helix-turn-helix domain HTH_36 PF13730.1 gi|433592697|ref|YP_007282193.1| - 0.0097 16.0 0.0 0.019 15.1 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain RPA_C PF08784.6 gi|433592697|ref|YP_007282193.1| - 0.01 16.2 0.0 0.02 15.2 0.0 1.4 1 0 0 1 1 1 0 Replication protein A C terminal HTH_34 PF13601.1 gi|433592697|ref|YP_007282193.1| - 0.01 15.8 0.0 0.023 14.7 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain TetR_N PF00440.18 gi|433592697|ref|YP_007282193.1| - 0.015 14.9 0.0 0.036 13.7 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family HTH_40 PF14493.1 gi|433592697|ref|YP_007282193.1| - 0.017 15.3 0.0 0.029 14.5 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_DeoR PF08220.7 gi|433592697|ref|YP_007282193.1| - 0.021 14.3 0.1 0.039 13.4 0.1 1.4 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain Sulfolobus_pRN PF05584.6 gi|433592697|ref|YP_007282193.1| - 0.024 14.5 0.1 0.24 11.4 0.0 2.1 2 0 0 2 2 2 0 Sulfolobus plasmid regulatory protein SMC_Nse1 PF07574.8 gi|433592697|ref|YP_007282193.1| - 0.027 14.1 0.1 0.045 13.3 0.0 1.3 1 0 0 1 1 1 0 Nse1 non-SMC component of SMC5-6 complex HTH_23 PF13384.1 gi|433592697|ref|YP_007282193.1| - 0.028 14.0 0.1 0.16 11.6 0.0 2.1 2 0 0 2 2 2 0 Homeodomain-like domain HemN_C PF06969.11 gi|433592697|ref|YP_007282193.1| - 0.029 14.4 0.0 0.12 12.5 0.0 2.0 2 0 0 2 2 2 0 HemN C-terminal domain PadR PF03551.9 gi|433592697|ref|YP_007282193.1| - 0.042 13.6 0.2 0.47 10.2 0.0 2.4 2 1 0 2 2 2 0 Transcriptional regulator PadR-like family HTH_7 PF02796.10 gi|433592697|ref|YP_007282193.1| - 0.071 12.9 0.0 0.14 12.0 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase Rio2_N PF09202.6 gi|433592697|ref|YP_007282193.1| - 0.093 12.8 0.0 0.17 11.9 0.0 1.3 1 0 0 1 1 1 0 Rio2, N-terminal DUF1803 PF08820.5 gi|433592697|ref|YP_007282193.1| - 0.14 11.8 0.0 0.27 10.9 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF1803) Acyl-CoA_dh_1 PF00441.19 gi|433592698|ref|YP_007282194.1| - 7.2e-32 110.5 1.0 1.1e-31 109.9 0.7 1.2 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|433592698|ref|YP_007282194.1| - 4.6e-27 94.8 1.0 2.6e-26 92.3 0.1 2.5 2 1 1 3 3 3 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.14 gi|433592698|ref|YP_007282194.1| - 1.3e-22 79.0 0.0 2.6e-22 78.0 0.0 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.6 gi|433592698|ref|YP_007282194.1| - 3.6e-11 43.4 0.5 5.5e-11 42.8 0.4 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain HpaB_N PF11794.3 gi|433592698|ref|YP_007282194.1| - 0.00083 18.8 0.0 0.0027 17.1 0.0 1.8 1 1 0 1 1 1 1 4-hydroxyphenylacetate 3-hydroxylase N terminal TAT_signal PF10518.4 gi|433592699|ref|YP_007282195.1| - 0.034 14.1 4.6 0.085 12.8 3.2 1.7 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence UCR_Fe-S_N PF10399.4 gi|433592699|ref|YP_007282195.1| - 0.045 12.9 1.1 0.084 12.0 0.7 1.4 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal DctM PF06808.7 gi|433592700|ref|YP_007282196.1| - 1e-57 195.6 42.4 1e-57 195.6 29.4 2.0 2 0 0 2 2 2 1 DctM-like transporters AMP-binding PF00501.23 gi|433592701|ref|YP_007282197.1| - 5.5e-107 357.7 0.0 6.8e-107 357.4 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|433592701|ref|YP_007282197.1| - 3.9e-20 72.5 1.4 9.8e-20 71.2 1.0 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain DUF1528 PF07515.6 gi|433592701|ref|YP_007282197.1| - 0.16 12.0 0.0 1.1 9.3 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1528) Acyl-CoA_dh_1 PF00441.19 gi|433592702|ref|YP_007282198.1| - 6e-54 182.2 3.1 9.5e-54 181.5 2.1 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_2 PF08028.6 gi|433592702|ref|YP_007282198.1| - 2e-28 99.3 5.2 3.1e-28 98.6 3.6 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|433592702|ref|YP_007282198.1| - 2e-26 92.7 0.4 2e-26 92.7 0.3 1.8 2 1 0 2 2 2 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.14 gi|433592702|ref|YP_007282198.1| - 3.2e-19 68.1 0.2 6.6e-19 67.1 0.1 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain HpaB PF03241.8 gi|433592702|ref|YP_007282198.1| - 0.00048 19.0 0.4 0.00076 18.3 0.3 1.4 1 0 0 1 1 1 1 4-hydroxyphenylacetate 3-hydroxylase C terminal DUF390 PF04094.9 gi|433592702|ref|YP_007282198.1| - 0.016 13.3 0.4 0.023 12.7 0.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF390) HpaB_N PF11794.3 gi|433592702|ref|YP_007282198.1| - 0.13 11.5 5.8 0.82 9.0 1.2 3.0 2 1 0 2 2 2 0 4-hydroxyphenylacetate 3-hydroxylase N terminal Thiolase_N PF00108.18 gi|433592703|ref|YP_007282199.1| - 3.5e-71 239.2 3.1 7.4e-71 238.2 2.1 1.5 1 1 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.13 gi|433592703|ref|YP_007282199.1| - 7.3e-44 148.1 0.0 1e-42 144.4 0.0 2.3 2 0 0 2 2 2 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.21 gi|433592703|ref|YP_007282199.1| - 4.7e-07 29.5 0.7 8.9e-07 28.6 0.3 1.6 1 1 0 1 1 1 1 Beta-ketoacyl synthase, N-terminal domain PDT PF00800.13 gi|433592703|ref|YP_007282199.1| - 0.0035 16.9 0.2 1.2 8.6 0.1 2.4 2 0 0 2 2 2 2 Prephenate dehydratase L-fibroin PF05849.6 gi|433592703|ref|YP_007282199.1| - 0.023 14.0 0.7 0.034 13.4 0.5 1.2 1 0 0 1 1 1 0 Fibroin light chain (L-fibroin) IclR PF01614.13 gi|433592704|ref|YP_007282200.1| - 2.9e-22 78.7 0.0 5.7e-22 77.7 0.0 1.4 1 0 0 1 1 1 1 Bacterial transcriptional regulator HTH_IclR PF09339.5 gi|433592704|ref|YP_007282200.1| - 7e-09 35.1 0.6 2.1e-08 33.6 0.1 2.0 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_20 PF12840.2 gi|433592704|ref|YP_007282200.1| - 1.5e-06 27.8 0.1 3.1e-06 26.8 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|433592704|ref|YP_007282200.1| - 5.2e-06 25.7 0.0 1e-05 24.7 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|433592704|ref|YP_007282200.1| - 3.5e-05 23.4 0.3 0.00038 20.1 0.0 2.6 3 1 0 3 3 3 1 Sugar-specific transcriptional regulator TrmB HTH_34 PF13601.1 gi|433592704|ref|YP_007282200.1| - 4e-05 23.5 0.0 0.00017 21.5 0.0 1.9 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_5 PF01022.15 gi|433592704|ref|YP_007282200.1| - 9.4e-05 21.9 0.1 0.00023 20.7 0.0 1.7 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family MarR PF01047.17 gi|433592704|ref|YP_007282200.1| - 0.00017 21.2 0.0 0.00053 19.6 0.0 1.8 2 0 0 2 2 2 1 MarR family MarR_2 PF12802.2 gi|433592704|ref|YP_007282200.1| - 0.00018 21.1 0.3 0.00079 19.0 0.0 2.1 2 1 0 2 2 2 1 MarR family HTH_27 PF13463.1 gi|433592704|ref|YP_007282200.1| - 0.00073 19.8 0.3 0.049 13.9 0.0 2.6 2 0 0 2 2 2 1 Winged helix DNA-binding domain Fe_dep_repress PF01325.14 gi|433592704|ref|YP_007282200.1| - 0.0018 18.1 0.2 0.0043 16.9 0.1 1.7 2 0 0 2 2 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_40 PF14493.1 gi|433592704|ref|YP_007282200.1| - 0.002 18.3 0.0 0.005 17.0 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|433592704|ref|YP_007282200.1| - 0.0042 16.6 0.1 0.015 14.9 0.0 1.9 2 0 0 2 2 2 1 HTH domain Rrf2 PF02082.15 gi|433592704|ref|YP_007282200.1| - 0.0051 16.8 0.0 0.019 15.0 0.0 2.0 2 0 0 2 2 1 1 Transcriptional regulator LexA_DNA_bind PF01726.11 gi|433592704|ref|YP_007282200.1| - 0.0077 15.7 0.0 0.033 13.7 0.0 1.9 2 0 0 2 2 2 1 LexA DNA binding domain PadR PF03551.9 gi|433592704|ref|YP_007282200.1| - 0.0097 15.6 0.2 0.033 13.9 0.1 2.0 1 1 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_23 PF13384.1 gi|433592704|ref|YP_007282200.1| - 0.028 14.0 0.0 0.06 13.0 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain Sigma70_ECF PF07638.6 gi|433592704|ref|YP_007282200.1| - 0.038 13.6 0.0 0.071 12.7 0.0 1.3 1 0 0 1 1 1 0 ECF sigma factor Sigma70_r4_2 PF08281.7 gi|433592704|ref|YP_007282200.1| - 0.055 12.9 0.0 0.14 11.5 0.0 1.7 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_AsnC-type PF13404.1 gi|433592704|ref|YP_007282200.1| - 0.071 12.6 0.1 0.2 11.2 0.1 1.8 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_45 PF14947.1 gi|433592704|ref|YP_007282200.1| - 0.072 12.9 0.0 0.21 11.4 0.0 1.9 2 1 0 2 2 1 0 Winged helix-turn-helix HTH_29 PF13551.1 gi|433592704|ref|YP_007282200.1| - 0.11 12.7 0.1 0.54 10.4 0.0 2.0 2 0 0 2 2 2 0 Winged helix-turn helix Na_H_antiporter PF03553.9 gi|433592705|ref|YP_007282201.1| - 5.9e-76 255.3 24.4 5.9e-76 255.3 16.9 2.5 2 1 0 2 2 2 1 Na+/H+ antiporter family Asparaginase PF00710.15 gi|433592707|ref|YP_007282203.1| - 1.2e-77 260.8 0.2 1.5e-77 260.5 0.2 1.0 1 0 0 1 1 1 1 Asparaginase Peripla_BP_4 PF13407.1 gi|433592707|ref|YP_007282203.1| - 0.02 14.2 1.1 0.044 13.1 0.8 1.5 1 0 0 1 1 1 0 Periplasmic binding protein domain 3HCDH_N PF02737.13 gi|433592709|ref|YP_007282205.1| - 3.6e-63 212.4 2.1 4.8e-63 212.0 1.4 1.2 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 3HCDH PF00725.17 gi|433592709|ref|YP_007282205.1| - 1.1e-30 105.8 0.1 6.6e-30 103.3 0.0 2.2 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NAD_Gly3P_dh_N PF01210.18 gi|433592709|ref|YP_007282205.1| - 5.3e-10 39.2 0.2 1.2e-09 38.0 0.2 1.6 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_2 PF03446.10 gi|433592709|ref|YP_007282205.1| - 3.9e-07 30.0 3.3 1.6e-06 28.0 2.3 1.9 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase UDPG_MGDP_dh_N PF03721.9 gi|433592709|ref|YP_007282205.1| - 6.7e-06 25.5 0.2 1.2e-05 24.7 0.1 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain F420_oxidored PF03807.12 gi|433592709|ref|YP_007282205.1| - 5.7e-05 23.4 7.1 0.001 19.4 3.0 3.1 2 1 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_3 PF03447.11 gi|433592709|ref|YP_007282205.1| - 0.0054 17.1 0.2 0.0096 16.3 0.2 1.6 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain ApbA PF02558.11 gi|433592709|ref|YP_007282205.1| - 0.0098 15.3 0.0 0.014 14.7 0.0 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA DUF4556 PF15094.1 gi|433592709|ref|YP_007282205.1| - 0.14 11.7 0.2 0.21 11.1 0.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4556) IlvN PF07991.7 gi|433592709|ref|YP_007282205.1| - 2.2 7.6 5.5 71 2.7 3.8 2.4 1 1 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain TrkA_N PF02254.13 gi|433592709|ref|YP_007282205.1| - 6.8 6.7 7.0 9.8 6.2 2.2 2.6 2 1 0 2 2 2 0 TrkA-N domain FAD-oxidase_C PF02913.14 gi|433592710|ref|YP_007282206.1| - 1e-62 211.6 0.2 2.8e-62 210.2 0.1 1.8 2 0 0 2 2 2 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.18 gi|433592710|ref|YP_007282206.1| - 1.4e-38 131.5 0.1 3.2e-38 130.3 0.0 1.7 1 0 0 1 1 1 1 FAD binding domain Fer4_8 PF13183.1 gi|433592710|ref|YP_007282206.1| - 1.9e-07 31.0 4.7 3.5e-07 30.1 3.2 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|433592710|ref|YP_007282206.1| - 1.9e-07 31.3 2.9 4e-07 30.2 2.0 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain CCG PF02754.11 gi|433592710|ref|YP_007282206.1| - 1e-05 25.4 0.0 0.0088 16.0 0.0 2.6 2 0 0 2 2 2 2 Cysteine-rich domain Cytokin-bind PF09265.5 gi|433592710|ref|YP_007282206.1| - 3.3e-05 23.1 0.3 5.2e-05 22.5 0.2 1.3 1 0 0 1 1 1 1 Cytokinin dehydrogenase 1, FAD and cytokinin binding Fer4_18 PF13746.1 gi|433592710|ref|YP_007282206.1| - 0.00016 22.0 2.4 0.00033 21.0 0.3 2.3 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|433592710|ref|YP_007282206.1| - 0.048 13.5 5.1 0.088 12.6 0.5 2.4 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|433592710|ref|YP_007282206.1| - 0.2 11.4 7.5 0.3 10.9 0.9 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|433592710|ref|YP_007282206.1| - 0.29 11.5 8.0 6.5 7.2 5.8 2.4 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|433592710|ref|YP_007282206.1| - 0.43 10.8 9.4 0.3 11.3 1.1 2.4 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4 PF00037.22 gi|433592710|ref|YP_007282206.1| - 1.4 8.6 15.7 0.22 11.2 3.2 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_2 PF12797.2 gi|433592710|ref|YP_007282206.1| - 3.6 7.7 9.9 1.4 8.9 1.6 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain DUF1656 PF07869.7 gi|433592711|ref|YP_007282207.1| - 0.061 13.1 0.9 0.25 11.1 0.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1656) DUF457 PF04307.9 gi|433592712|ref|YP_007282208.1| - 7.8e-09 35.0 13.2 1.3e-08 34.2 9.1 1.5 1 1 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) HTH_AsnC-type PF13404.1 gi|433592713|ref|YP_007282209.1| - 0.00022 20.6 0.6 0.21 11.1 0.0 2.8 2 0 0 2 2 2 2 AsnC-type helix-turn-helix domain MarR_2 PF12802.2 gi|433592713|ref|YP_007282209.1| - 0.02 14.5 0.2 7.2 6.3 0.0 2.6 2 0 0 2 2 2 0 MarR family Glycos_transf_3 PF00591.16 gi|433592714|ref|YP_007282210.1| - 3.5e-32 111.8 0.0 5.2e-32 111.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.12 gi|433592714|ref|YP_007282210.1| - 3.6e-13 48.8 0.0 1.2e-12 47.2 0.0 1.9 1 0 0 1 1 1 1 Glycosyl transferase family, helical bundle domain Tol_Tol_Ttg2 PF05494.7 gi|433592714|ref|YP_007282210.1| - 0.0054 16.3 0.0 0.011 15.3 0.0 1.4 1 0 0 1 1 1 1 Toluene tolerance, Ttg2 Stomoxyn PF11585.3 gi|433592714|ref|YP_007282210.1| - 0.42 10.4 2.7 0.93 9.3 1.9 1.5 1 0 0 1 1 1 0 Insect antimicrobial peptide, stomoxyn ECH PF00378.15 gi|433592715|ref|YP_007282211.1| - 9.1e-60 201.8 0.1 1.1e-59 201.5 0.1 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family DDE_3 PF13358.1 gi|433592716|ref|YP_007282212.1| - 2.7e-13 49.8 0.0 5.9e-13 48.8 0.0 1.6 1 0 0 1 1 1 1 DDE superfamily endonuclease DDE_1 PF03184.14 gi|433592716|ref|YP_007282212.1| - 6.5e-06 25.4 0.0 1.2e-05 24.5 0.0 1.4 1 0 0 1 1 1 1 DDE superfamily endonuclease rve PF00665.21 gi|433592716|ref|YP_007282212.1| - 6.2e-05 23.0 0.0 0.0001 22.3 0.0 1.3 1 0 0 1 1 1 1 Integrase core domain Oxidored_nitro PF00148.14 gi|433592716|ref|YP_007282212.1| - 0.0087 14.7 0.0 0.012 14.2 0.0 1.1 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase DNA_pol_alpha_N PF12254.3 gi|433592716|ref|YP_007282212.1| - 1 9.1 6.0 0.12 12.1 0.3 2.2 3 0 0 3 3 3 0 DNA polymerase alpha subunit p180 N terminal HTH_29 PF13551.1 gi|433592718|ref|YP_007282214.1| - 6.2e-13 48.8 0.0 1e-12 48.1 0.0 1.4 2 0 0 2 2 2 1 Winged helix-turn helix HTH_32 PF13565.1 gi|433592718|ref|YP_007282214.1| - 1.7e-11 44.7 0.2 3.7e-11 43.6 0.0 1.6 2 0 0 2 2 2 1 Homeodomain-like domain HTH_23 PF13384.1 gi|433592718|ref|YP_007282214.1| - 1.4e-09 37.2 0.0 1.1e-08 34.4 0.0 2.1 2 0 0 2 2 2 1 Homeodomain-like domain HTH_28 PF13518.1 gi|433592718|ref|YP_007282214.1| - 1.3e-06 28.2 0.1 3e-06 27.1 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_7 PF02796.10 gi|433592718|ref|YP_007282214.1| - 0.00046 19.9 0.1 0.0012 18.6 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase HTH_33 PF13592.1 gi|433592718|ref|YP_007282214.1| - 0.00047 19.6 0.0 0.017 14.6 0.0 2.3 2 0 0 2 2 2 1 Winged helix-turn helix Sigma70_r4 PF04545.11 gi|433592718|ref|YP_007282214.1| - 0.00062 19.0 0.0 0.0026 17.0 0.0 2.0 2 0 0 2 2 2 1 Sigma-70, region 4 DUF746 PF05344.6 gi|433592718|ref|YP_007282214.1| - 0.0022 17.4 0.0 0.0063 16.0 0.0 1.7 2 0 0 2 2 2 1 Domain of Unknown Function (DUF746) LZ_Tnp_IS481 PF13011.1 gi|433592718|ref|YP_007282214.1| - 0.0096 16.2 0.0 0.014 15.6 0.0 1.3 1 0 0 1 1 1 1 leucine-zipper of insertion element IS481 Sigma70_r4_2 PF08281.7 gi|433592718|ref|YP_007282214.1| - 0.015 14.7 0.0 0.036 13.5 0.0 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 rRNA_processing PF08524.6 gi|433592718|ref|YP_007282214.1| - 0.12 12.1 0.2 0.22 11.3 0.1 1.3 1 0 0 1 1 1 0 rRNA processing 3HCDH_N PF02737.13 gi|433592719|ref|YP_007282215.1| - 1.2e-52 178.2 2.3 1.5e-52 177.8 0.3 1.8 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 3HCDH PF00725.17 gi|433592719|ref|YP_007282215.1| - 1.2e-11 44.8 0.0 8.2e-11 42.1 0.0 2.3 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NAD_binding_2 PF03446.10 gi|433592719|ref|YP_007282215.1| - 4.1e-07 29.9 1.1 2e-05 24.4 0.1 2.2 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_Gly3P_dh_N PF01210.18 gi|433592719|ref|YP_007282215.1| - 1e-05 25.3 0.3 0.00017 21.3 0.2 2.2 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus DAO PF01266.19 gi|433592719|ref|YP_007282215.1| - 7.3e-05 21.8 3.0 7.4e-05 21.8 1.3 1.6 1 1 0 2 2 2 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|433592719|ref|YP_007282215.1| - 0.00069 19.5 0.8 0.0013 18.6 0.6 1.5 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain TrkA_N PF02254.13 gi|433592719|ref|YP_007282215.1| - 0.00099 19.0 1.5 0.0021 18.0 0.2 2.0 2 0 0 2 2 2 1 TrkA-N domain F420_oxidored PF03807.12 gi|433592719|ref|YP_007282215.1| - 0.0033 17.8 0.3 0.0081 16.5 0.1 1.9 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent UDPG_MGDP_dh_N PF03721.9 gi|433592719|ref|YP_007282215.1| - 0.0041 16.5 0.5 0.0064 15.8 0.3 1.5 1 1 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Pyr_redox PF00070.22 gi|433592719|ref|YP_007282215.1| - 0.0099 16.2 2.5 0.01 16.1 0.6 2.0 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.9 gi|433592719|ref|YP_007282215.1| - 0.043 13.6 0.2 0.081 12.7 0.2 1.8 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|433592719|ref|YP_007282215.1| - 0.11 11.5 0.5 0.18 10.8 0.2 1.4 2 0 0 2 2 2 0 FAD binding domain Shikimate_DH PF01488.15 gi|433592719|ref|YP_007282215.1| - 0.15 12.1 0.5 0.42 10.7 0.2 1.9 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase NAD_binding_7 PF13241.1 gi|433592719|ref|YP_007282215.1| - 0.36 11.0 2.3 1.1 9.5 1.6 2.0 1 1 0 1 1 1 0 Putative NAD(P)-binding SNARE_assoc PF09335.6 gi|433592720|ref|YP_007282216.1| - 0.00039 20.6 0.1 0.00048 20.3 0.1 1.1 1 0 0 1 1 1 1 SNARE associated Golgi protein DUF4229 PF14012.1 gi|433592720|ref|YP_007282216.1| - 0.029 14.2 3.5 0.045 13.6 2.4 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF4229) DUF4400 PF14348.1 gi|433592720|ref|YP_007282216.1| - 0.24 10.7 1.5 0.31 10.3 1.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4400) AA_permease_2 PF13520.1 gi|433592721|ref|YP_007282217.1| - 2.3e-33 115.3 39.7 3.7e-33 114.7 27.6 1.2 1 1 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|433592721|ref|YP_007282217.1| - 8.6e-29 100.2 35.2 1.2e-28 99.7 24.4 1.2 1 0 0 1 1 1 1 Amino acid permease AIF-MLS PF14962.1 gi|433592721|ref|YP_007282217.1| - 3.7 7.1 4.5 0.6 9.7 0.0 1.8 2 0 0 2 2 2 0 Mitochondria Localisation Sequence Ribonuc_red_sm PF00268.16 gi|433592722|ref|YP_007282218.1| - 0.03 13.3 0.0 0.098 11.6 0.0 1.8 1 1 0 1 1 1 0 Ribonucleotide reductase, small chain CoA_transf_3 PF02515.12 gi|433592723|ref|YP_007282219.1| - 2.7e-56 189.8 0.1 3.9e-56 189.3 0.0 1.2 1 0 0 1 1 1 1 CoA-transferase family III DUF3458 PF11940.3 gi|433592723|ref|YP_007282219.1| - 0.082 11.7 0.0 0.12 11.1 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3458) AMP-binding PF00501.23 gi|433592724|ref|YP_007282220.1| - 1.2e-82 277.5 0.0 1.5e-82 277.2 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|433592724|ref|YP_007282220.1| - 2.9e-16 60.1 0.3 1.1e-15 58.3 0.1 2.0 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain Acyl-CoA_dh_1 PF00441.19 gi|433592725|ref|YP_007282221.1| - 7e-35 120.3 1.1 1e-34 119.7 0.7 1.2 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.14 gi|433592725|ref|YP_007282221.1| - 5.9e-21 73.7 0.2 1.8e-20 72.1 0.0 1.9 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_N PF02771.11 gi|433592725|ref|YP_007282221.1| - 9.6e-12 45.4 0.1 2.4e-11 44.2 0.1 1.7 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.6 gi|433592725|ref|YP_007282221.1| - 6.5e-08 32.9 0.5 1.3e-07 31.9 0.3 1.6 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain Amidase PF01425.16 gi|433592726|ref|YP_007282222.1| - 1.5e-111 373.3 0.0 1.7e-111 373.1 0.0 1.0 1 0 0 1 1 1 1 Amidase adh_short PF00106.20 gi|433592727|ref|YP_007282223.1| - 7.6e-37 126.7 2.6 1.2e-36 126.2 1.8 1.3 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|433592727|ref|YP_007282223.1| - 8.7e-22 78.0 0.0 1e-21 77.8 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|433592727|ref|YP_007282223.1| - 1.5e-16 60.5 1.0 2.1e-16 60.1 0.7 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|433592727|ref|YP_007282223.1| - 5e-11 42.4 0.0 9.1e-11 41.6 0.0 1.6 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|433592727|ref|YP_007282223.1| - 7.2e-07 28.1 0.2 1.1e-06 27.6 0.1 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.12 gi|433592727|ref|YP_007282223.1| - 0.01 14.7 0.2 0.015 14.1 0.2 1.2 1 0 0 1 1 1 0 RmlD substrate binding domain 3HCDH_N PF02737.13 gi|433592727|ref|YP_007282223.1| - 0.011 15.3 1.9 0.023 14.3 1.3 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ELFV_dehydrog PF00208.16 gi|433592727|ref|YP_007282223.1| - 0.033 13.7 0.1 0.05 13.1 0.1 1.3 1 0 0 1 1 1 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase NAD_binding_10 PF13460.1 gi|433592727|ref|YP_007282223.1| - 0.035 14.1 3.6 0.057 13.4 2.5 1.6 1 1 0 1 1 1 0 NADH(P)-binding TrkA_N PF02254.13 gi|433592727|ref|YP_007282223.1| - 0.039 13.9 0.1 0.093 12.7 0.1 1.6 1 0 0 1 1 1 0 TrkA-N domain Polysacc_synt_2 PF02719.10 gi|433592727|ref|YP_007282223.1| - 0.1 11.4 0.0 0.14 11.0 0.0 1.2 1 0 0 1 1 1 0 Polysaccharide biosynthesis protein NAD_binding_7 PF13241.1 gi|433592727|ref|YP_007282223.1| - 0.13 12.5 0.1 0.4 10.9 0.1 1.8 2 0 0 2 2 2 0 Putative NAD(P)-binding DUF2184 PF09950.4 gi|433592727|ref|YP_007282223.1| - 0.13 11.3 0.0 0.2 10.7 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2184) Thiolase_N PF00108.18 gi|433592728|ref|YP_007282224.1| - 3e-60 203.4 0.0 8.4e-60 201.9 0.0 1.7 1 1 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.13 gi|433592728|ref|YP_007282224.1| - 1.8e-41 140.3 0.1 3.2e-41 139.6 0.1 1.4 1 0 0 1 1 1 1 Thiolase, C-terminal domain ACP_syn_III_C PF08541.5 gi|433592728|ref|YP_007282224.1| - 0.018 15.0 0.1 0.047 13.7 0.1 1.7 1 0 0 1 1 1 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Acyl-CoA_dh_1 PF00441.19 gi|433592729|ref|YP_007282225.1| - 1.9e-37 128.6 4.1 1.9e-37 128.6 2.8 1.9 3 0 0 3 3 3 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.14 gi|433592729|ref|YP_007282225.1| - 1.4e-18 66.1 0.1 3.7e-18 64.7 0.1 1.8 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_N PF02771.11 gi|433592729|ref|YP_007282225.1| - 4.8e-18 65.7 2.1 6.3e-18 65.4 0.4 2.0 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.6 gi|433592729|ref|YP_007282225.1| - 1.4e-13 51.2 2.4 2.9e-13 50.2 1.6 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain HpaB_N PF11794.3 gi|433592729|ref|YP_007282225.1| - 0.00077 18.9 0.1 0.0033 16.8 0.0 2.0 2 0 0 2 2 2 1 4-hydroxyphenylacetate 3-hydroxylase N terminal RDD PF06271.7 gi|433592731|ref|YP_007282227.1| - 4.5e-15 55.7 0.3 5.8e-15 55.3 0.2 1.1 1 0 0 1 1 1 1 RDD family Gemini_mov PF01708.11 gi|433592731|ref|YP_007282227.1| - 4.2 6.9 4.8 37 3.9 1.9 2.2 1 1 1 2 2 2 0 Geminivirus putative movement protein ABC_tran PF00005.22 gi|433592732|ref|YP_007282228.1| - 3.6e-33 114.7 0.0 5.6e-33 114.1 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|433592732|ref|YP_007282228.1| - 1.3e-06 28.6 0.0 0.00022 21.3 0.0 2.6 2 1 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|433592732|ref|YP_007282228.1| - 0.0023 17.9 0.3 0.006 16.5 0.2 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|433592732|ref|YP_007282228.1| - 0.005 16.9 0.0 0.011 15.9 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA PF00004.24 gi|433592732|ref|YP_007282228.1| - 0.0067 16.6 1.1 0.013 15.6 0.3 2.1 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_15 PF13175.1 gi|433592732|ref|YP_007282228.1| - 0.0081 15.2 0.0 0.52 9.3 0.0 2.1 1 1 1 2 2 2 1 AAA ATPase domain NB-ARC PF00931.17 gi|433592732|ref|YP_007282228.1| - 0.015 14.1 0.0 0.021 13.6 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain SMC_N PF02463.14 gi|433592732|ref|YP_007282228.1| - 0.021 14.0 0.1 0.34 10.0 0.1 2.1 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain PRC PF05239.11 gi|433592732|ref|YP_007282228.1| - 0.04 13.7 0.1 0.1 12.4 0.1 1.7 1 0 0 1 1 1 0 PRC-barrel domain AAA_29 PF13555.1 gi|433592732|ref|YP_007282228.1| - 0.045 13.2 0.1 0.087 12.3 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF258 PF03193.11 gi|433592732|ref|YP_007282228.1| - 0.052 12.7 0.0 0.087 12.0 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_5 PF07728.9 gi|433592732|ref|YP_007282228.1| - 0.054 13.2 0.0 0.094 12.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_17 PF13207.1 gi|433592732|ref|YP_007282228.1| - 0.067 14.0 0.4 0.24 12.2 0.3 2.0 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|433592732|ref|YP_007282228.1| - 0.086 12.7 0.0 0.16 11.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.1 gi|433592732|ref|YP_007282228.1| - 0.098 12.9 0.1 0.2 11.9 0.1 1.7 1 1 0 1 1 1 0 AAA domain Rad17 PF03215.10 gi|433592732|ref|YP_007282228.1| - 0.099 11.3 0.1 0.15 10.7 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA_19 PF13245.1 gi|433592732|ref|YP_007282228.1| - 0.15 11.8 0.2 0.32 10.7 0.1 1.5 1 0 0 1 1 1 0 Part of AAA domain Miro PF08477.8 gi|433592732|ref|YP_007282228.1| - 0.15 12.5 0.0 0.28 11.7 0.0 1.5 1 0 0 1 1 1 0 Miro-like protein AAA_30 PF13604.1 gi|433592732|ref|YP_007282228.1| - 0.19 11.3 0.6 0.36 10.3 0.0 1.7 2 0 0 2 2 2 0 AAA domain BPD_transp_1 PF00528.17 gi|433592733|ref|YP_007282229.1| - 6.7e-16 58.3 16.8 6.7e-16 58.3 11.6 2.3 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component DDE_Tnp_1 PF01609.16 gi|433592734|ref|YP_007282230.1| - 0.0077 15.7 0.2 0.031 13.8 0.1 1.9 1 1 0 1 1 1 1 Transposase DDE domain SBP_bac_1 PF01547.20 gi|433592735|ref|YP_007282231.1| - 4.2e-14 53.0 2.0 6.9e-14 52.2 1.4 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein TAT_signal PF10518.4 gi|433592735|ref|YP_007282231.1| - 6.7 6.9 11.6 0.16 12.0 3.5 1.8 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence Oxidored_molyb PF00174.14 gi|433592736|ref|YP_007282232.1| - 7.8e-40 136.0 0.0 1.1e-39 135.5 0.0 1.2 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain Mo-co_dimer PF03404.11 gi|433592736|ref|YP_007282232.1| - 6.3e-12 45.2 0.1 1.3e-11 44.2 0.1 1.4 1 0 0 1 1 1 1 Mo-co oxidoreductase dimerisation domain BNR PF02012.15 gi|433592736|ref|YP_007282232.1| - 0.068 13.0 0.8 0.24 11.3 0.6 2.0 1 0 0 1 1 1 0 BNR/Asp-box repeat MFS_1 PF07690.11 gi|433592737|ref|YP_007282233.1| - 2.5e-38 131.6 64.9 5.9e-25 87.7 26.9 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily DUF3172 PF11371.3 gi|433592737|ref|YP_007282233.1| - 3.9 6.9 4.7 2.1 7.8 0.2 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF3172) AMP-binding PF00501.23 gi|433592738|ref|YP_007282234.1| - 2.6e-101 339.0 0.0 3e-101 338.8 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|433592738|ref|YP_007282234.1| - 4.7e-18 65.9 0.7 2.9e-17 63.3 0.2 2.4 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain adh_short PF00106.20 gi|433592739|ref|YP_007282235.1| - 3e-38 131.3 0.1 3.9e-38 130.9 0.1 1.2 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|433592739|ref|YP_007282235.1| - 1.6e-26 93.5 0.0 1.9e-26 93.3 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|433592739|ref|YP_007282235.1| - 7.5e-15 55.0 0.0 1e-14 54.5 0.0 1.1 1 0 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|433592739|ref|YP_007282235.1| - 1.8e-05 24.3 0.1 2.8e-05 23.6 0.0 1.4 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.1 gi|433592739|ref|YP_007282235.1| - 0.00016 21.7 0.3 0.001 19.1 0.2 2.1 1 1 0 1 1 1 1 NADH(P)-binding 3Beta_HSD PF01073.14 gi|433592739|ref|YP_007282235.1| - 0.0006 18.6 0.1 0.00077 18.2 0.1 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Saccharop_dh PF03435.13 gi|433592739|ref|YP_007282235.1| - 0.0025 16.8 0.1 0.0044 16.0 0.0 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase MaoC_dehydrat_N PF13452.1 gi|433592740|ref|YP_007282236.1| - 2.8e-30 104.8 4.1 8.2e-27 93.5 0.5 3.1 2 1 0 2 2 2 2 N-terminal half of MaoC dehydratase MaoC_dehydratas PF01575.14 gi|433592740|ref|YP_007282236.1| - 7.2e-18 64.1 0.2 4.4e-16 58.3 0.1 2.4 2 0 0 2 2 2 2 MaoC like domain 4HBT PF03061.17 gi|433592740|ref|YP_007282236.1| - 0.016 15.2 0.3 5.6 7.1 0.0 2.7 2 1 0 2 2 2 0 Thioesterase superfamily DUF35 PF01796.12 gi|433592741|ref|YP_007282237.1| - 4.4e-18 65.2 0.5 8.5e-18 64.3 0.3 1.4 1 0 0 1 1 1 1 DUF35 OB-fold domain DUF35_N PF12172.3 gi|433592741|ref|YP_007282237.1| - 6e-08 32.3 3.6 1.2e-07 31.3 2.5 1.5 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) FdhE PF04216.7 gi|433592741|ref|YP_007282237.1| - 0.012 15.3 0.2 0.015 14.9 0.1 1.1 1 0 0 1 1 1 0 Protein involved in formate dehydrogenase formation Thiolase_C PF02803.13 gi|433592742|ref|YP_007282238.1| - 9.1e-09 34.7 0.1 2.8e-07 29.9 0.0 2.5 2 0 0 2 2 2 2 Thiolase, C-terminal domain AMP-binding PF00501.23 gi|433592743|ref|YP_007282239.1| - 3.4e-103 345.2 0.2 4.1e-103 344.9 0.1 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|433592743|ref|YP_007282239.1| - 6.5e-16 59.0 0.8 6.5e-16 59.0 0.5 1.9 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain BPL_C PF02237.12 gi|433592743|ref|YP_007282239.1| - 0.0099 15.5 0.4 0.42 10.3 0.0 2.9 3 0 0 3 3 3 1 Biotin protein ligase C terminal domain 2-Hacid_dh_C PF02826.14 gi|433592744|ref|YP_007282240.1| - 1.3e-55 187.3 0.0 2.5e-55 186.3 0.0 1.5 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|433592744|ref|YP_007282240.1| - 3.4e-13 49.2 0.0 4.5e-13 48.8 0.0 1.1 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AdoHcyase_NAD PF00670.16 gi|433592744|ref|YP_007282240.1| - 1.8e-05 24.6 0.1 3.2e-05 23.8 0.0 1.3 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain F420_oxidored PF03807.12 gi|433592744|ref|YP_007282240.1| - 0.00053 20.3 0.0 0.0012 19.2 0.0 1.6 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.10 gi|433592744|ref|YP_007282240.1| - 0.002 17.9 0.0 0.0034 17.2 0.0 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase Bac_luciferase PF00296.15 gi|433592745|ref|YP_007282241.1| - 3.5e-49 167.5 2.2 4.2e-49 167.3 1.5 1.0 1 0 0 1 1 1 1 Luciferase-like monooxygenase DUF1730 PF08331.5 gi|433592745|ref|YP_007282241.1| - 0.033 13.8 0.0 0.066 12.8 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF1730) DPRP PF04244.8 gi|433592745|ref|YP_007282241.1| - 0.059 12.8 0.0 0.089 12.3 0.0 1.2 1 0 0 1 1 1 0 Deoxyribodipyrimidine photo-lyase-related protein Lactamase_B PF00753.22 gi|433592746|ref|YP_007282242.1| - 2.2e-22 79.6 4.5 3.8e-22 78.9 3.1 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|433592746|ref|YP_007282242.1| - 5.8e-08 32.5 0.0 8.3e-08 32.0 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|433592746|ref|YP_007282242.1| - 0.078 12.6 0.0 0.13 11.9 0.0 1.5 1 1 0 1 1 1 0 Beta-lactamase superfamily domain Acyl-CoA_dh_1 PF00441.19 gi|433592747|ref|YP_007282243.1| - 5.1e-47 159.7 2.3 8e-47 159.1 1.6 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.14 gi|433592747|ref|YP_007282243.1| - 8e-24 82.9 0.0 1.9e-23 81.6 0.0 1.7 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.6 gi|433592747|ref|YP_007282243.1| - 2.7e-18 66.5 0.5 4e-18 65.9 0.4 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|433592747|ref|YP_007282243.1| - 1.2e-15 58.0 0.0 3.6e-15 56.5 0.0 1.8 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain HpaB_N PF11794.3 gi|433592747|ref|YP_007282243.1| - 0.033 13.5 0.0 0.056 12.8 0.0 1.3 1 0 0 1 1 1 0 4-hydroxyphenylacetate 3-hydroxylase N terminal IclR PF01614.13 gi|433592748|ref|YP_007282244.1| - 4.4e-35 120.1 0.0 1.7e-31 108.5 0.0 2.1 2 0 0 2 2 2 2 Bacterial transcriptional regulator HTH_IclR PF09339.5 gi|433592748|ref|YP_007282244.1| - 2.3e-14 52.7 0.1 6.9e-14 51.1 0.1 1.8 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_20 PF12840.2 gi|433592748|ref|YP_007282244.1| - 4.5e-07 29.5 0.0 1e-06 28.4 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|433592748|ref|YP_007282244.1| - 1.4e-06 27.6 0.0 5.3e-06 25.7 0.0 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|433592748|ref|YP_007282244.1| - 1.2e-05 24.9 0.0 2e-05 24.1 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|433592748|ref|YP_007282244.1| - 7.3e-05 22.3 0.0 0.00018 21.1 0.0 1.6 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|433592748|ref|YP_007282244.1| - 0.00014 21.4 0.0 0.00027 20.5 0.0 1.4 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|433592748|ref|YP_007282244.1| - 0.00029 20.4 0.0 0.00065 19.3 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Fe_dep_repress PF01325.14 gi|433592748|ref|YP_007282244.1| - 0.0004 20.2 0.0 0.0009 19.1 0.0 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_34 PF13601.1 gi|433592748|ref|YP_007282244.1| - 0.00055 19.9 0.0 0.0015 18.5 0.0 1.6 2 0 0 2 2 1 1 Winged helix DNA-binding domain HTH_11 PF08279.7 gi|433592748|ref|YP_007282244.1| - 0.00086 18.9 0.1 0.0028 17.2 0.0 1.9 2 0 0 2 2 2 1 HTH domain HTH_27 PF13463.1 gi|433592748|ref|YP_007282244.1| - 0.0036 17.6 0.1 0.0073 16.6 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain Penicillinase_R PF03965.11 gi|433592748|ref|YP_007282244.1| - 0.0036 17.3 0.1 0.0078 16.3 0.0 1.5 1 0 0 1 1 1 1 Penicillinase repressor HTH_40 PF14493.1 gi|433592748|ref|YP_007282244.1| - 0.0082 16.3 0.0 0.016 15.4 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_45 PF14947.1 gi|433592748|ref|YP_007282244.1| - 0.018 14.8 0.0 0.031 14.1 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_DeoR PF08220.7 gi|433592748|ref|YP_007282244.1| - 0.022 14.2 0.0 0.051 13.1 0.0 1.6 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain LexA_DNA_bind PF01726.11 gi|433592748|ref|YP_007282244.1| - 0.03 13.8 0.0 0.049 13.1 0.0 1.3 1 0 0 1 1 1 0 LexA DNA binding domain Sulfolobus_pRN PF05584.6 gi|433592748|ref|YP_007282244.1| - 0.037 13.9 0.0 0.077 12.9 0.0 1.5 1 0 0 1 1 1 0 Sulfolobus plasmid regulatory protein Rrf2 PF02082.15 gi|433592748|ref|YP_007282244.1| - 0.079 13.0 0.0 0.17 12.0 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator HTH_10 PF04967.7 gi|433592748|ref|YP_007282244.1| - 0.082 12.5 0.0 0.19 11.3 0.0 1.6 1 0 0 1 1 1 0 HTH DNA binding domain DUF3489 PF11994.3 gi|433592748|ref|YP_007282244.1| - 0.12 12.3 0.1 0.21 11.5 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3489) HTH_36 PF13730.1 gi|433592748|ref|YP_007282244.1| - 0.12 12.5 0.2 0.28 11.3 0.0 1.7 2 0 0 2 2 1 0 Helix-turn-helix domain adh_short PF00106.20 gi|433592749|ref|YP_007282245.1| - 9.3e-38 129.7 1.2 1.2e-37 129.4 0.9 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|433592749|ref|YP_007282245.1| - 1.2e-35 123.4 0.0 1.4e-35 123.2 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|433592749|ref|YP_007282245.1| - 2.4e-15 56.6 0.4 3e-15 56.3 0.3 1.1 1 0 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|433592749|ref|YP_007282245.1| - 1.2e-06 28.1 0.5 3.1e-06 26.7 0.4 1.7 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.1 gi|433592749|ref|YP_007282245.1| - 0.002 18.1 0.8 0.0026 17.7 0.5 1.2 1 0 0 1 1 1 1 NADH(P)-binding 2-Hacid_dh_C PF02826.14 gi|433592749|ref|YP_007282245.1| - 0.016 14.3 0.4 0.033 13.3 0.3 1.6 1 1 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 3HCDH_N PF02737.13 gi|433592749|ref|YP_007282245.1| - 0.069 12.8 0.7 0.11 12.0 0.5 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AdoHcyase_NAD PF00670.16 gi|433592749|ref|YP_007282245.1| - 0.086 12.6 0.9 0.16 11.8 0.2 1.7 2 0 0 2 2 2 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AstE_AspA PF04952.9 gi|433592750|ref|YP_007282246.1| - 4.2e-35 121.0 0.0 4.9e-35 120.8 0.0 1.0 1 0 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family Peptidase_M14 PF00246.19 gi|433592750|ref|YP_007282246.1| - 0.02 14.5 0.0 0.073 12.6 0.0 1.9 1 1 0 1 1 1 0 Zinc carboxypeptidase PemK PF02452.12 gi|433592751|ref|YP_007282247.1| - 0.00027 21.1 0.0 0.00029 20.9 0.0 1.1 1 0 0 1 1 1 1 PemK-like protein HTH_20 PF12840.2 gi|433592752|ref|YP_007282248.1| - 0.0001 22.0 0.0 0.00016 21.3 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|433592752|ref|YP_007282248.1| - 0.00025 20.6 0.0 0.00036 20.1 0.0 1.3 1 0 0 1 1 1 1 MarR family Rrf2 PF02082.15 gi|433592752|ref|YP_007282248.1| - 0.0021 18.1 0.0 0.003 17.6 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator MarR PF01047.17 gi|433592752|ref|YP_007282248.1| - 0.0061 16.2 0.0 0.01 15.5 0.0 1.4 1 0 0 1 1 1 1 MarR family DUF4423 PF14394.1 gi|433592752|ref|YP_007282248.1| - 0.0078 15.7 0.0 0.0084 15.6 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) TrmB PF01978.14 gi|433592752|ref|YP_007282248.1| - 0.0095 15.6 0.0 0.014 15.0 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Fe_dep_repress PF01325.14 gi|433592752|ref|YP_007282248.1| - 0.028 14.3 0.0 0.042 13.7 0.0 1.2 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_27 PF13463.1 gi|433592752|ref|YP_007282248.1| - 0.044 14.1 0.0 0.12 12.7 0.0 1.6 1 1 1 2 2 2 0 Winged helix DNA-binding domain Dimerisation PF08100.6 gi|433592752|ref|YP_007282248.1| - 0.14 11.9 0.0 0.23 11.3 0.0 1.3 1 0 0 1 1 1 0 Dimerisation domain Pro_isomerase PF00160.16 gi|433592753|ref|YP_007282249.1| - 9.8e-50 168.7 0.0 1.1e-49 168.5 0.0 1.0 1 0 0 1 1 1 1 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD PAS_4 PF08448.5 gi|433592754|ref|YP_007282250.1| - 1.2e-70 234.5 20.7 2.3e-14 53.3 0.1 6.9 6 0 0 6 6 6 6 PAS fold PAS_9 PF13426.1 gi|433592754|ref|YP_007282250.1| - 3.1e-47 159.2 0.5 1.3e-13 51.1 0.0 6.6 6 0 0 6 6 6 6 PAS domain PAS PF00989.19 gi|433592754|ref|YP_007282250.1| - 3e-34 117.1 0.0 1.6e-10 40.7 0.0 6.6 5 1 0 6 6 6 4 PAS fold HATPase_c PF02518.21 gi|433592754|ref|YP_007282250.1| - 3.2e-27 94.4 0.0 7.1e-27 93.3 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.1 gi|433592754|ref|YP_007282250.1| - 9.6e-18 63.3 0.7 3.7e-08 32.9 0.0 6.2 5 0 0 5 5 5 2 PAS domain PAS_3 PF08447.6 gi|433592754|ref|YP_007282250.1| - 3.1e-12 46.4 0.0 0.00014 21.9 0.0 4.8 5 0 0 5 5 5 2 PAS fold GAF_2 PF13185.1 gi|433592754|ref|YP_007282250.1| - 3.1e-11 43.9 0.2 3.1e-11 43.9 0.2 5.5 4 2 3 7 7 6 1 GAF domain HisKA PF00512.20 gi|433592754|ref|YP_007282250.1| - 2.1e-10 40.4 0.1 2.1e-10 40.4 0.0 3.4 4 0 0 4 4 3 1 His Kinase A (phospho-acceptor) domain PAS_10 PF13596.1 gi|433592754|ref|YP_007282250.1| - 2.3e-10 40.6 0.0 0.55 10.5 0.0 4.7 4 0 0 4 4 4 3 PAS domain GAF_3 PF13492.1 gi|433592754|ref|YP_007282250.1| - 1.8e-09 37.7 6.8 3.3e-08 33.6 0.0 5.3 4 2 1 5 5 5 1 GAF domain PAS_7 PF12860.2 gi|433592754|ref|YP_007282250.1| - 2.6e-08 33.8 0.4 0.051 13.5 0.0 5.4 5 0 0 5 5 5 2 PAS fold GAF PF01590.21 gi|433592754|ref|YP_007282250.1| - 6.2e-07 29.6 0.6 2e-06 28.0 0.4 2.0 1 0 0 1 1 1 1 GAF domain HATPase_c_5 PF14501.1 gi|433592754|ref|YP_007282250.1| - 0.00013 21.5 0.0 0.00056 19.5 0.0 2.0 2 0 0 2 2 2 1 GHKL domain Cache_3 PF14827.1 gi|433592754|ref|YP_007282250.1| - 0.00063 19.6 0.7 9.8 6.1 0.0 5.4 5 2 0 5 5 5 0 Sensory domain of two-component sensor kinase HATPase_c_2 PF13581.1 gi|433592754|ref|YP_007282250.1| - 0.0053 16.5 0.2 0.013 15.2 0.1 1.7 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain TPR_6 PF13174.1 gi|433592754|ref|YP_007282250.1| - 0.021 15.2 0.8 1.5e+02 3.1 0.0 5.2 4 0 0 4 4 4 0 Tetratricopeptide repeat HATPase_c_3 PF13589.1 gi|433592754|ref|YP_007282250.1| - 0.053 13.1 0.0 0.11 12.1 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ApoLp-III PF07464.6 gi|433592754|ref|YP_007282250.1| - 0.098 12.6 0.0 0.21 11.6 0.0 1.5 1 0 0 1 1 1 0 Apolipophorin-III precursor (apoLp-III) adh_short PF00106.20 gi|433592755|ref|YP_007282251.1| - 9.4e-20 71.1 1.2 1.6e-19 70.4 0.8 1.5 1 1 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|433592755|ref|YP_007282251.1| - 3.2e-07 30.2 0.1 5.9e-07 29.3 0.1 1.5 1 0 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|433592755|ref|YP_007282251.1| - 5.1e-07 29.3 0.0 7.2e-07 28.8 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family adh_short_C2 PF13561.1 gi|433592755|ref|YP_007282251.1| - 0.00018 21.3 0.0 0.00029 20.6 0.0 1.3 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase NAD_binding_10 PF13460.1 gi|433592755|ref|YP_007282251.1| - 0.00048 20.1 0.9 0.00083 19.3 0.6 1.5 1 1 0 1 1 1 1 NADH(P)-binding RmlD_sub_bind PF04321.12 gi|433592755|ref|YP_007282251.1| - 0.012 14.4 0.0 0.023 13.5 0.0 1.4 1 0 0 1 1 1 0 RmlD substrate binding domain Polysacc_synt_2 PF02719.10 gi|433592755|ref|YP_007282251.1| - 0.14 10.9 0.0 0.2 10.5 0.0 1.2 1 0 0 1 1 1 0 Polysaccharide biosynthesis protein SSF PF00474.12 gi|433592757|ref|YP_007282253.1| - 6.2e-64 216.1 30.0 8.5e-64 215.6 20.8 1.2 1 0 0 1 1 1 1 Sodium:solute symporter family CcmH PF03918.9 gi|433592758|ref|YP_007282254.1| - 0.1 11.5 0.0 0.1 11.5 0.0 1.0 1 0 0 1 1 1 0 Cytochrome C biogenesis protein FixQ PF05545.6 gi|433592758|ref|YP_007282254.1| - 0.19 11.4 2.1 0.42 10.2 1.5 1.7 1 1 0 1 1 1 0 Cbb3-type cytochrome oxidase component FixQ DUF3961 PF13106.1 gi|433592758|ref|YP_007282254.1| - 0.42 10.1 2.3 0.51 9.9 1.6 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3961) Pro_dh PF01619.13 gi|433592759|ref|YP_007282255.1| - 3.4e-35 121.5 0.0 1.1e-34 119.8 0.0 1.7 1 1 0 1 1 1 1 Proline dehydrogenase HTH_10 PF04967.7 gi|433592760|ref|YP_007282256.1| - 5e-19 67.6 0.0 9.2e-19 66.7 0.0 1.5 1 0 0 1 1 1 1 HTH DNA binding domain HTH_24 PF13412.1 gi|433592760|ref|YP_007282256.1| - 5.6e-05 22.4 0.1 0.00012 21.4 0.1 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Sigma70_r4_2 PF08281.7 gi|433592760|ref|YP_007282256.1| - 0.0012 18.2 0.5 0.78 9.2 0.1 2.3 2 0 0 2 2 2 2 Sigma-70, region 4 HTH_11 PF08279.7 gi|433592760|ref|YP_007282256.1| - 0.0016 18.0 0.2 0.0047 16.5 0.0 1.8 2 0 0 2 2 2 1 HTH domain MarR_2 PF12802.2 gi|433592760|ref|YP_007282256.1| - 0.0039 16.8 0.0 0.026 14.1 0.0 2.4 2 0 0 2 2 2 1 MarR family UPF0122 PF04297.9 gi|433592760|ref|YP_007282256.1| - 0.0072 16.3 0.0 0.014 15.4 0.0 1.4 1 0 0 1 1 1 1 Putative helix-turn-helix protein, YlxM / p13 like HTH_5 PF01022.15 gi|433592760|ref|YP_007282256.1| - 0.0093 15.6 0.0 0.019 14.6 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TetR_N PF00440.18 gi|433592760|ref|YP_007282256.1| - 0.013 15.1 0.0 0.036 13.7 0.0 1.8 2 0 0 2 2 2 0 Bacterial regulatory proteins, tetR family GntR PF00392.16 gi|433592760|ref|YP_007282256.1| - 0.015 14.7 0.2 0.032 13.6 0.1 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_23 PF13384.1 gi|433592760|ref|YP_007282256.1| - 0.021 14.4 1.8 0.14 11.8 0.0 2.4 2 0 0 2 2 2 0 Homeodomain-like domain HTH_20 PF12840.2 gi|433592760|ref|YP_007282256.1| - 0.03 14.1 0.0 0.081 12.7 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain Sigma70_r4 PF04545.11 gi|433592760|ref|YP_007282256.1| - 0.03 13.6 0.1 0.071 12.4 0.1 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_AsnC-type PF13404.1 gi|433592760|ref|YP_007282256.1| - 0.044 13.3 0.1 0.044 13.3 0.0 2.1 3 0 0 3 3 3 0 AsnC-type helix-turn-helix domain HTH_psq PF05225.11 gi|433592760|ref|YP_007282256.1| - 0.068 12.7 0.0 0.33 10.5 0.0 2.0 2 0 0 2 2 2 0 helix-turn-helix, Psq domain HTH_17 PF12728.2 gi|433592760|ref|YP_007282256.1| - 0.094 12.9 0.1 0.19 12.0 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain GerE PF00196.14 gi|433592760|ref|YP_007282256.1| - 0.094 12.0 0.0 1.9 7.8 0.0 2.3 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family DUF746 PF05344.6 gi|433592760|ref|YP_007282256.1| - 0.11 12.0 0.1 10 5.7 0.0 3.0 3 0 0 3 3 3 0 Domain of Unknown Function (DUF746) HTH_30 PF13556.1 gi|433592760|ref|YP_007282256.1| - 0.23 11.0 1.3 0.81 9.3 0.0 2.4 3 0 0 3 3 3 0 PucR C-terminal helix-turn-helix domain Aldedh PF00171.17 gi|433592761|ref|YP_007282257.1| - 2.8e-143 477.6 0.0 3.2e-143 477.4 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.9 gi|433592761|ref|YP_007282257.1| - 0.018 13.8 0.0 0.061 12.0 0.0 1.7 1 1 0 1 1 1 0 Acyl-CoA reductase (LuxC) IclR PF01614.13 gi|433592762|ref|YP_007282258.1| - 2.4e-30 104.8 0.0 7.8e-30 103.2 0.0 1.8 2 0 0 2 2 2 1 Bacterial transcriptional regulator HTH_IclR PF09339.5 gi|433592762|ref|YP_007282258.1| - 5.9e-13 48.1 7.0 7.3e-13 47.8 0.5 3.1 3 0 0 3 3 3 1 IclR helix-turn-helix domain HTH_20 PF12840.2 gi|433592762|ref|YP_007282258.1| - 1.2e-08 34.6 1.1 1.1e-07 31.5 0.2 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|433592762|ref|YP_007282258.1| - 6.8e-08 32.0 0.4 1.9e-06 27.4 0.1 2.6 3 0 0 3 3 3 1 MarR family MarR PF01047.17 gi|433592762|ref|YP_007282258.1| - 1.2e-07 31.2 0.0 2.2e-07 30.4 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.15 gi|433592762|ref|YP_007282258.1| - 2.1e-06 27.2 0.2 6.7e-06 25.6 0.1 1.9 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|433592762|ref|YP_007282258.1| - 2.4e-06 26.8 0.0 7e-06 25.3 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.7 gi|433592762|ref|YP_007282258.1| - 5.1e-05 22.8 0.4 0.0016 18.0 0.0 3.2 4 0 0 4 4 4 1 HTH domain TrmB PF01978.14 gi|433592762|ref|YP_007282258.1| - 0.00015 21.4 0.1 0.0053 16.4 0.0 2.6 3 0 0 3 3 2 1 Sugar-specific transcriptional regulator TrmB HTH_40 PF14493.1 gi|433592762|ref|YP_007282258.1| - 0.00064 19.8 0.1 0.002 18.3 0.0 1.9 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_27 PF13463.1 gi|433592762|ref|YP_007282258.1| - 0.0027 17.9 0.1 0.0086 16.3 0.1 1.8 1 0 0 1 1 1 1 Winged helix DNA-binding domain EAP30 PF04157.11 gi|433592762|ref|YP_007282258.1| - 0.0073 15.4 0.0 0.013 14.6 0.0 1.4 1 0 0 1 1 1 1 EAP30/Vps36 family HTH_10 PF04967.7 gi|433592762|ref|YP_007282258.1| - 0.013 15.0 0.1 0.034 13.7 0.0 1.6 1 0 0 1 1 1 0 HTH DNA binding domain DUF4423 PF14394.1 gi|433592762|ref|YP_007282258.1| - 0.014 14.9 0.0 0.033 13.7 0.0 1.6 2 0 0 2 2 1 0 Domain of unknown function (DUF4423) HTH_23 PF13384.1 gi|433592762|ref|YP_007282258.1| - 0.028 14.0 0.0 0.078 12.6 0.0 1.7 1 0 0 1 1 1 0 Homeodomain-like domain HTH_32 PF13565.1 gi|433592762|ref|YP_007282258.1| - 0.039 14.7 0.1 1.1 10.1 0.1 2.6 2 0 0 2 2 2 0 Homeodomain-like domain Fe_dep_repress PF01325.14 gi|433592762|ref|YP_007282258.1| - 0.068 13.1 0.0 0.16 11.9 0.0 1.6 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain RPA_C PF08784.6 gi|433592762|ref|YP_007282258.1| - 0.087 13.2 0.0 0.19 12.1 0.0 1.5 1 0 0 1 1 1 0 Replication protein A C terminal HTH_DeoR PF08220.7 gi|433592762|ref|YP_007282258.1| - 0.093 12.2 0.1 0.3 10.6 0.0 1.8 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_29 PF13551.1 gi|433592762|ref|YP_007282258.1| - 0.11 12.6 0.1 8.4 6.5 0.0 2.7 1 1 0 2 2 2 0 Winged helix-turn helix LexA_DNA_bind PF01726.11 gi|433592762|ref|YP_007282258.1| - 0.11 12.0 0.0 0.41 10.2 0.0 1.9 2 0 0 2 2 2 0 LexA DNA binding domain HTH_36 PF13730.1 gi|433592762|ref|YP_007282258.1| - 0.12 12.5 0.0 0.25 11.5 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_31 PF13560.1 gi|433592762|ref|YP_007282258.1| - 0.5 10.5 3.0 0.38 11.0 0.2 2.2 3 0 0 3 3 2 0 Helix-turn-helix domain Fer4_15 PF13459.1 gi|433592763|ref|YP_007282259.1| - 0.032 14.8 2.1 0.032 14.8 1.5 2.1 2 1 1 3 3 3 0 4Fe-4S single cluster domain SnoaL_3 PF13474.1 gi|433592764|ref|YP_007282260.1| - 0.044 13.8 2.2 0.37 10.8 0.4 2.5 2 1 0 2 2 2 0 SnoaL-like domain Phage_base_V PF04717.7 gi|433592764|ref|YP_007282260.1| - 0.049 13.5 0.1 0.23 11.4 0.0 2.1 2 0 0 2 2 2 0 Phage-related baseplate assembly protein Aldedh PF00171.17 gi|433592765|ref|YP_007282261.1| - 3e-160 533.5 0.2 3.4e-160 533.3 0.1 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family AFOR_C PF01314.13 gi|433592767|ref|YP_007282263.1| - 0.053 12.1 0.1 0.055 12.1 0.0 1.2 1 0 0 1 1 1 0 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 Thiolase_N PF00108.18 gi|433592768|ref|YP_007282264.1| - 6.1e-78 261.4 0.5 1e-77 260.7 0.3 1.3 1 1 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.13 gi|433592768|ref|YP_007282264.1| - 1.1e-42 144.3 0.1 2.4e-42 143.2 0.0 1.6 2 0 0 2 2 2 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.21 gi|433592768|ref|YP_007282264.1| - 0.00016 21.2 0.3 0.00035 20.1 0.2 1.5 1 0 0 1 1 1 1 Beta-ketoacyl synthase, N-terminal domain HTH_7 PF02796.10 gi|433592768|ref|YP_007282264.1| - 0.091 12.6 0.0 0.37 10.7 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase ACP_syn_III PF08545.5 gi|433592768|ref|YP_007282264.1| - 2 8.1 5.7 11 5.8 0.0 2.6 3 0 0 3 3 3 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III DUF3040 PF11239.3 gi|433592769|ref|YP_007282265.1| - 0.0032 17.4 1.3 0.0039 17.2 0.9 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3040) DUF4395 PF14340.1 gi|433592769|ref|YP_007282265.1| - 0.034 14.2 0.2 0.036 14.1 0.2 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4395) Adeno_E3 PF06040.6 gi|433592769|ref|YP_007282265.1| - 0.043 13.7 0.3 0.05 13.5 0.2 1.0 1 0 0 1 1 1 0 Adenovirus E3 protein PLDc_N PF13396.1 gi|433592770|ref|YP_007282266.1| - 0.16 11.6 7.8 0.07 12.8 3.8 1.6 1 1 1 2 2 2 0 Phospholipase_D-nuclease N-terminal TraB PF01963.12 gi|433592771|ref|YP_007282267.1| - 4.7e-20 72.1 0.1 6.2e-20 71.7 0.1 1.1 1 0 0 1 1 1 1 TraB family DUF399 PF04187.8 gi|433592771|ref|YP_007282267.1| - 0.0018 17.8 2.5 0.0021 17.5 1.2 1.6 2 1 0 2 2 2 1 Protein of unknown function, DUF399 Hydrolase PF00702.21 gi|433592771|ref|YP_007282267.1| - 0.019 15.3 0.2 0.029 14.7 0.1 1.3 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase AFOR_C PF01314.13 gi|433592772|ref|YP_007282268.1| - 4.6e-70 236.2 0.4 2.1e-69 234.0 0.3 1.8 1 1 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.10 gi|433592772|ref|YP_007282268.1| - 2.4e-58 196.7 0.0 3.7e-58 196.1 0.0 1.2 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain gag-asp_proteas PF13975.1 gi|433592772|ref|YP_007282268.1| - 0.095 12.5 0.2 0.19 11.5 0.1 1.5 1 0 0 1 1 1 0 gag-polyprotein putative aspartyl protease DUF2391 PF09622.5 gi|433592773|ref|YP_007282269.1| - 0.00037 19.7 0.1 0.00052 19.2 0.1 1.2 1 0 0 1 1 1 1 Putative integral membrane protein (DUF2391) Sensor_TM1 PF13755.1 gi|433592773|ref|YP_007282269.1| - 0.11 12.0 0.3 0.19 11.2 0.2 1.4 1 0 0 1 1 1 0 Sensor N-terminal transmembrane domain EamA PF00892.15 gi|433592774|ref|YP_007282270.1| - 9.4e-10 38.6 15.4 1.2e-09 38.2 10.6 1.1 1 0 0 1 1 1 1 EamA-like transporter family UPF0546 PF10639.4 gi|433592774|ref|YP_007282270.1| - 0.024 14.4 2.0 0.038 13.8 1.4 1.4 1 0 0 1 1 1 0 Uncharacterised protein family UPF0546 PTPS_related PF10131.4 gi|433592774|ref|YP_007282270.1| - 1.9 6.5 11.2 1.3 7.1 5.9 1.8 1 1 1 2 2 2 0 6-pyruvoyl-tetrahydropterin synthase related domain; membrane protein ABC2_membrane_5 PF13346.1 gi|433592774|ref|YP_007282270.1| - 3.3 6.9 12.7 11 5.2 8.8 1.8 1 1 0 1 1 1 0 ABC-2 family transporter protein Na_H_Exchanger PF00999.16 gi|433592775|ref|YP_007282271.1| - 7.4e-36 123.4 43.2 9e-36 123.1 30.0 1.1 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family TrkA_N PF02254.13 gi|433592775|ref|YP_007282271.1| - 4.3e-33 113.7 3.2 4.5e-33 113.7 1.0 2.0 2 0 0 2 2 1 1 TrkA-N domain TrkA_C PF02080.16 gi|433592775|ref|YP_007282271.1| - 6.5e-12 44.8 1.7 1.8e-11 43.4 0.2 2.3 2 0 0 2 2 2 1 TrkA-C domain NAD_binding_7 PF13241.1 gi|433592775|ref|YP_007282271.1| - 2.8e-08 33.9 0.2 6.1e-08 32.8 0.1 1.6 1 0 0 1 1 1 1 Putative NAD(P)-binding FAD_binding_3 PF01494.14 gi|433592775|ref|YP_007282271.1| - 1.6e-05 24.1 0.1 2.3e-05 23.6 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain NAD_binding_10 PF13460.1 gi|433592775|ref|YP_007282271.1| - 2.2e-05 24.5 1.7 6.9e-05 22.9 1.0 2.0 1 1 0 1 1 1 1 NADH(P)-binding ApbA PF02558.11 gi|433592775|ref|YP_007282271.1| - 2.8e-05 23.5 2.6 0.00032 20.1 0.1 2.9 3 0 0 3 3 2 1 Ketopantoate reductase PanE/ApbA F420_oxidored PF03807.12 gi|433592775|ref|YP_007282271.1| - 7.4e-05 23.1 2.0 0.0068 16.8 0.2 2.7 1 1 1 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent Saccharop_dh PF03435.13 gi|433592775|ref|YP_007282271.1| - 0.0002 20.5 0.3 0.00033 19.7 0.2 1.4 1 0 0 1 1 1 1 Saccharopine dehydrogenase Pyr_redox PF00070.22 gi|433592775|ref|YP_007282271.1| - 0.00085 19.6 0.4 0.0023 18.3 0.2 1.8 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|433592775|ref|YP_007282271.1| - 0.0017 17.3 0.1 0.0026 16.7 0.0 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase UDPG_MGDP_dh_N PF03721.9 gi|433592775|ref|YP_007282271.1| - 0.0033 16.8 0.1 0.0059 16.0 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Rossmann-like PF10727.4 gi|433592775|ref|YP_007282271.1| - 0.0036 17.0 0.4 0.011 15.4 0.3 1.8 1 0 0 1 1 1 1 Rossmann-like domain 2-Hacid_dh_C PF02826.14 gi|433592775|ref|YP_007282271.1| - 0.0054 15.8 0.1 0.016 14.3 0.0 1.7 1 1 1 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.18 gi|433592775|ref|YP_007282271.1| - 0.0095 15.6 0.0 0.026 14.2 0.0 1.8 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 3HCDH_N PF02737.13 gi|433592775|ref|YP_007282271.1| - 0.018 14.6 0.2 0.035 13.7 0.1 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_2 PF03446.10 gi|433592775|ref|YP_007282271.1| - 0.034 14.0 0.1 0.069 12.9 0.0 1.6 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase Lycopene_cycl PF05834.7 gi|433592775|ref|YP_007282271.1| - 0.034 13.0 0.0 0.051 12.4 0.0 1.2 1 0 0 1 1 1 0 Lycopene cyclase protein Pyr_redox_2 PF07992.9 gi|433592775|ref|YP_007282271.1| - 0.036 13.9 0.1 0.078 12.8 0.0 1.6 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|433592775|ref|YP_007282271.1| - 0.053 11.9 0.0 0.081 11.3 0.0 1.2 1 0 0 1 1 1 0 HI0933-like protein AMP-binding PF00501.23 gi|433592776|ref|YP_007282272.1| - 1.9e-92 309.8 0.0 2.3e-92 309.5 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme Lactamase_B PF00753.22 gi|433592777|ref|YP_007282273.1| - 1.2e-20 74.0 9.1 1.7e-20 73.5 6.3 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|433592777|ref|YP_007282273.1| - 6.7e-05 22.5 0.2 0.0001 21.9 0.1 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain HATPase_c PF02518.21 gi|433592778|ref|YP_007282274.1| - 8.2e-20 70.5 0.0 1.4e-19 69.8 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.1 gi|433592778|ref|YP_007282274.1| - 1.5e-05 24.7 0.0 3e-05 23.8 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.1 gi|433592778|ref|YP_007282274.1| - 2.2e-05 24.0 0.0 3.6e-05 23.3 0.0 1.3 1 0 0 1 1 1 1 GHKL domain HisKA PF00512.20 gi|433592778|ref|YP_007282274.1| - 0.036 14.0 1.9 0.064 13.2 0.7 2.0 1 1 1 2 2 2 0 His Kinase A (phospho-acceptor) domain SsgA PF04686.7 gi|433592778|ref|YP_007282274.1| - 0.049 13.2 0.0 0.14 11.8 0.0 1.7 1 0 0 1 1 1 0 Streptomyces sporulation and cell division protein, SsgA SPOB_a PF14689.1 gi|433592778|ref|YP_007282274.1| - 0.074 12.6 0.2 0.13 11.8 0.1 1.4 1 0 0 1 1 1 0 Sensor_kinase_SpoOB-type, alpha-helical domain HATPase_c_3 PF13589.1 gi|433592778|ref|YP_007282274.1| - 0.13 11.8 0.0 0.24 11.0 0.0 1.3 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Cation_efflux PF01545.16 gi|433592779|ref|YP_007282275.1| - 8.1e-58 195.7 0.9 1e-57 195.4 0.6 1.0 1 0 0 1 1 1 1 Cation efflux family ASL_C2 PF14698.1 gi|433592779|ref|YP_007282275.1| - 0.027 14.5 0.2 0.087 12.8 0.0 1.9 2 0 0 2 2 2 0 Argininosuccinate lyase C-terminal Phage_holin_1 PF04531.8 gi|433592779|ref|YP_007282275.1| - 1.9 8.5 3.9 21 5.2 0.1 2.6 2 1 1 3 3 3 0 Bacteriophage holin CRCB PF02537.10 gi|433592780|ref|YP_007282276.1| - 5e-14 52.1 11.8 5.9e-14 51.9 8.2 1.0 1 0 0 1 1 1 1 CrcB-like protein Keratin_assoc PF09775.4 gi|433592780|ref|YP_007282276.1| - 0.071 12.6 1.2 0.11 12.0 0.8 1.3 1 1 0 1 1 1 0 Keratinocyte-associated protein 2 CRCB PF02537.10 gi|433592781|ref|YP_007282277.1| - 4.4e-27 94.3 8.4 5.3e-27 94.0 5.9 1.1 1 0 0 1 1 1 1 CrcB-like protein MgtE PF01769.11 gi|433592782|ref|YP_007282278.1| - 2.2e-21 76.5 2.9 3.2e-21 76.0 2.0 1.3 1 0 0 1 1 1 1 Divalent cation transporter MgtE PF01769.11 gi|433592783|ref|YP_007282279.1| - 8.6e-22 77.8 8.2 8.6e-22 77.8 5.7 1.7 2 0 0 2 2 2 1 Divalent cation transporter DUF1422 PF07226.6 gi|433592783|ref|YP_007282279.1| - 0.012 15.3 1.6 0.034 13.8 0.4 2.1 2 1 0 2 2 2 0 Protein of unknown function (DUF1422) Pox_A14 PF05767.7 gi|433592783|ref|YP_007282279.1| - 0.047 13.6 6.0 0.087 12.7 1.2 2.7 2 1 1 3 3 3 0 Poxvirus virion envelope protein A14 Pho86 PF11124.3 gi|433592783|ref|YP_007282279.1| - 0.056 12.4 0.1 0.066 12.1 0.1 1.2 1 0 0 1 1 1 0 Inorganic phosphate transporter Pho86 Claudin_2 PF13903.1 gi|433592783|ref|YP_007282279.1| - 0.12 12.0 3.3 0.22 11.2 2.3 1.6 1 0 0 1 1 1 0 PMP-22/EMP/MP20/Claudin tight junction TrkA_C PF02080.16 gi|433592784|ref|YP_007282280.1| - 5.1e-26 90.0 0.6 1.7e-15 56.3 0.0 2.6 2 0 0 2 2 2 2 TrkA-C domain PhoU PF01895.14 gi|433592784|ref|YP_007282280.1| - 5.1e-16 58.8 7.0 1.3e-07 31.9 1.7 2.7 2 0 0 2 2 2 2 PhoU domain PhoU_div PF01865.11 gi|433592784|ref|YP_007282280.1| - 0.005 16.0 4.5 0.27 10.3 0.5 2.2 2 0 0 2 2 2 2 Protein of unknown function DUF47 tRNA-synt_2b PF00587.20 gi|433592785|ref|YP_007282281.1| - 1.3e-34 119.2 0.0 1.9e-34 118.7 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) Seryl_tRNA_N PF02403.17 gi|433592785|ref|YP_007282281.1| - 2.5e-27 95.0 7.1 4.3e-27 94.2 4.9 1.4 1 0 0 1 1 1 1 Seryl-tRNA synthetase N-terminal domain DUF342 PF03961.8 gi|433592785|ref|YP_007282281.1| - 0.0097 14.3 1.7 0.015 13.7 1.2 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF342) Mnd1 PF03962.10 gi|433592785|ref|YP_007282281.1| - 0.16 11.6 3.9 0.27 10.8 2.7 1.3 1 0 0 1 1 1 0 Mnd1 family V-SNARE PF05008.10 gi|433592785|ref|YP_007282281.1| - 1.5 9.0 7.4 20 5.4 2.5 2.5 2 0 0 2 2 2 0 Vesicle transport v-SNARE protein N-terminus APG6 PF04111.7 gi|433592785|ref|YP_007282281.1| - 3 6.8 5.1 8.1 5.3 3.4 1.7 2 0 0 2 2 2 0 Autophagy protein Apg6 TMF_DNA_bd PF12329.3 gi|433592785|ref|YP_007282281.1| - 5.1 6.9 13.7 0.89 9.4 6.6 1.8 2 0 0 2 2 2 0 TATA element modulatory factor 1 DNA binding SRP1_TIP1 PF00660.12 gi|433592786|ref|YP_007282282.1| - 0.00064 19.4 1.8 10 5.9 0.1 3.8 3 0 0 3 3 3 3 Seripauperin and TIP1 family ISG65-75 PF11727.3 gi|433592786|ref|YP_007282282.1| - 0.0032 16.5 6.7 0.24 10.4 0.2 3.2 3 0 0 3 3 3 3 Invariant surface glycoprotein DASH_Dad4 PF08650.5 gi|433592786|ref|YP_007282282.1| - 0.0036 17.1 0.1 23 4.9 0.0 3.4 3 0 0 3 3 3 2 DASH complex subunit Dad4 DUF4473 PF14747.1 gi|433592786|ref|YP_007282282.1| - 0.0038 17.3 3.3 1.8 8.8 0.1 3.5 3 0 0 3 3 3 1 Domain of unknown function (DUF4473) GTP_EFTU PF00009.22 gi|433592787|ref|YP_007282283.1| - 3.4e-62 209.2 0.3 6.6e-62 208.2 0.2 1.5 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_IV PF03764.13 gi|433592787|ref|YP_007282283.1| - 1.7e-24 85.6 0.0 5e-24 84.1 0.0 1.8 1 0 0 1 1 1 1 Elongation factor G, domain IV EFG_C PF00679.19 gi|433592787|ref|YP_007282283.1| - 4.3e-23 80.9 0.0 8.6e-22 76.8 0.0 2.7 2 0 0 2 2 2 1 Elongation factor G C-terminus EFG_II PF14492.1 gi|433592787|ref|YP_007282283.1| - 3.4e-21 74.8 0.4 3.4e-21 74.8 0.3 2.0 2 0 0 2 2 2 1 Elongation Factor G, domain II GTP_EFTU_D2 PF03144.20 gi|433592787|ref|YP_007282283.1| - 8.1e-18 64.3 2.2 1.3e-16 60.4 0.8 3.2 2 0 0 2 2 2 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|433592787|ref|YP_007282283.1| - 1.4e-05 24.9 0.1 6.6e-05 22.8 0.0 2.1 2 0 0 2 2 2 1 50S ribosome-binding GTPase SRPRB PF09439.5 gi|433592787|ref|YP_007282283.1| - 0.084 12.0 0.1 0.32 10.1 0.1 1.9 1 1 0 1 1 1 0 Signal recognition particle receptor beta subunit Ras PF00071.17 gi|433592787|ref|YP_007282283.1| - 0.13 11.5 0.0 0.31 10.4 0.0 1.5 1 0 0 1 1 1 0 Ras family Ribosomal_S7 PF00177.16 gi|433592792|ref|YP_007282288.1| - 1.5e-34 118.6 1.1 1.8e-34 118.4 0.8 1.0 1 0 0 1 1 1 1 Ribosomal protein S7p/S5e Ribosom_S12_S23 PF00164.20 gi|433592793|ref|YP_007282289.1| - 3.8e-41 139.3 0.2 4.4e-41 139.1 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S12/S23 V4R PF02830.13 gi|433592794|ref|YP_007282290.1| - 1e-06 28.4 0.2 1.8e-06 27.6 0.1 1.4 1 0 0 1 1 1 1 V4R domain DUF2378 PF09536.5 gi|433592794|ref|YP_007282290.1| - 0.017 14.6 0.0 0.13 11.7 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2378) Aldedh PF00171.17 gi|433592795|ref|YP_007282291.1| - 7.7e-154 512.4 0.0 8.7e-154 512.2 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family Topo_Zn_Ribbon PF08272.6 gi|433592795|ref|YP_007282291.1| - 0.058 12.7 0.0 0.11 11.8 0.0 1.4 1 0 0 1 1 1 0 Topoisomerase I zinc-ribbon-like ParA PF10609.4 gi|433592796|ref|YP_007282292.1| - 5.2e-19 67.9 0.1 9.3e-19 67.0 0.1 1.4 1 0 0 1 1 1 1 ParA/MinD ATPase like CbiA PF01656.18 gi|433592796|ref|YP_007282292.1| - 4.6e-18 65.3 0.1 9.9e-18 64.2 0.1 1.5 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|433592796|ref|YP_007282292.1| - 3.6e-09 36.7 0.0 7.3e-08 32.4 0.0 2.2 2 0 0 2 2 2 1 AAA domain VirC1 PF07015.6 gi|433592796|ref|YP_007282292.1| - 5.3e-06 25.6 0.0 9.9e-06 24.7 0.0 1.3 1 0 0 1 1 1 1 VirC1 protein MipZ PF09140.6 gi|433592796|ref|YP_007282292.1| - 3.2e-05 23.1 0.9 0.0001 21.4 0.6 1.9 1 1 0 1 1 1 1 ATPase MipZ DUF59 PF01883.14 gi|433592796|ref|YP_007282292.1| - 5e-05 23.2 0.6 0.00019 21.3 0.1 2.3 2 0 0 2 2 2 1 Domain of unknown function DUF59 ArsA_ATPase PF02374.10 gi|433592796|ref|YP_007282292.1| - 0.00032 19.8 0.2 0.0023 17.0 0.3 2.0 2 0 0 2 2 2 1 Anion-transporting ATPase AAA_26 PF13500.1 gi|433592796|ref|YP_007282292.1| - 0.003 17.2 0.1 0.1 12.2 0.1 2.3 2 0 0 2 2 2 1 AAA domain HHH_5 PF14520.1 gi|433592796|ref|YP_007282292.1| - 0.025 14.7 0.8 0.21 11.7 0.0 2.8 3 0 0 3 3 3 0 Helix-hairpin-helix domain GFO_IDH_MocA PF01408.17 gi|433592796|ref|YP_007282292.1| - 0.047 14.2 0.0 0.21 12.1 0.0 2.0 2 1 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold YhjQ PF06564.7 gi|433592796|ref|YP_007282292.1| - 0.062 12.6 0.2 0.46 9.7 0.1 2.0 2 0 0 2 2 2 0 YhjQ protein AAA_17 PF13207.1 gi|433592796|ref|YP_007282292.1| - 0.079 13.7 0.1 0.25 12.1 0.1 2.2 1 1 0 1 1 1 0 AAA domain APS_kinase PF01583.15 gi|433592796|ref|YP_007282292.1| - 0.093 12.3 0.0 0.21 11.2 0.0 1.5 1 0 0 1 1 1 0 Adenylylsulphate kinase MobB PF03205.9 gi|433592796|ref|YP_007282292.1| - 0.098 12.3 0.1 0.25 11.0 0.0 1.7 2 0 0 2 2 1 0 Molybdopterin guanine dinucleotide synthesis protein B SRP54 PF00448.17 gi|433592796|ref|YP_007282292.1| - 0.11 11.8 0.0 0.21 11.0 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_25 PF13481.1 gi|433592796|ref|YP_007282292.1| - 0.25 10.7 2.8 0.41 10.0 0.7 2.1 1 1 1 2 2 2 0 AAA domain Molybdopterin PF00384.17 gi|433592797|ref|YP_007282293.1| - 2.6e-35 122.0 0.0 6.5e-28 97.6 0.0 2.6 2 1 0 2 2 2 2 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|433592797|ref|YP_007282293.1| - 4.4e-05 23.2 0.1 0.00034 20.3 0.0 2.3 2 0 0 2 2 2 1 Molydopterin dinucleotide binding domain TAT_signal PF10518.4 gi|433592797|ref|YP_007282293.1| - 0.066 13.2 5.1 0.14 12.2 3.5 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Pox_VLTF3 PF04947.9 gi|433592797|ref|YP_007282293.1| - 0.15 11.5 0.0 0.24 10.8 0.0 1.2 1 0 0 1 1 1 0 Poxvirus Late Transcription Factor VLTF3 like Fer4_11 PF13247.1 gi|433592798|ref|YP_007282294.1| - 7.1e-30 102.8 9.0 7.1e-30 102.8 6.2 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|433592798|ref|YP_007282294.1| - 3e-08 33.9 15.4 0.00057 20.2 6.1 3.4 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|433592798|ref|YP_007282294.1| - 5.5e-07 29.2 23.3 0.0021 17.8 0.2 3.3 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|433592798|ref|YP_007282294.1| - 4.6e-06 26.5 12.9 0.013 15.5 0.0 3.4 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|433592798|ref|YP_007282294.1| - 7.1e-06 25.6 22.8 0.00012 21.7 1.2 4.7 4 1 0 4 4 4 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|433592798|ref|YP_007282294.1| - 2.1e-05 24.6 22.4 0.021 15.0 0.3 3.4 2 1 2 4 4 4 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|433592798|ref|YP_007282294.1| - 0.00038 20.2 20.3 0.007 16.1 0.3 3.4 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|433592798|ref|YP_007282294.1| - 0.033 13.7 1.6 0.033 13.7 1.1 4.8 4 1 0 4 4 4 0 4Fe-4S binding domain Fer4_17 PF13534.1 gi|433592798|ref|YP_007282294.1| - 0.081 13.2 0.2 0.081 13.2 0.1 3.9 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|433592798|ref|YP_007282294.1| - 0.57 10.1 30.1 0.1 12.5 0.7 5.0 4 2 0 4 4 4 0 4Fe-4S binding domain Fer4_16 PF13484.1 gi|433592798|ref|YP_007282294.1| - 3.7 8.3 21.4 3.4 8.4 0.2 3.7 3 0 0 3 3 3 0 4Fe-4S double cluster binding domain Fer4_15 PF13459.1 gi|433592798|ref|YP_007282294.1| - 5.4 7.6 19.2 4.7 7.8 3.2 4.2 3 1 0 3 3 3 0 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|433592798|ref|YP_007282294.1| - 9.1 7.1 32.8 7.7 7.3 0.8 4.3 4 0 0 4 4 4 0 4Fe-4S binding domain Nitrate_red_del PF02613.10 gi|433592799|ref|YP_007282295.1| - 1.8e-14 53.7 0.7 1.8e-14 53.7 0.5 1.5 2 0 0 2 2 2 1 Nitrate reductase delta subunit KH_2 PF07650.12 gi|433592800|ref|YP_007282296.1| - 3.1e-11 42.6 0.0 0.00016 21.1 0.0 2.1 2 0 0 2 2 2 2 KH domain KH_5 PF13184.1 gi|433592800|ref|YP_007282296.1| - 5.6e-09 35.6 0.0 1.7e-08 34.0 0.0 1.8 2 0 0 2 2 2 1 NusA-like KH domain KH_4 PF13083.1 gi|433592800|ref|YP_007282296.1| - 1.6e-08 34.0 0.1 7.8e-07 28.6 0.0 2.2 2 0 0 2 2 2 1 KH domain KH_1 PF00013.24 gi|433592800|ref|YP_007282296.1| - 2e-05 24.1 0.0 0.045 13.3 0.0 2.3 1 1 1 2 2 2 2 KH domain KH_3 PF13014.1 gi|433592800|ref|YP_007282296.1| - 0.02 14.5 0.0 0.35 10.5 0.0 2.4 2 0 0 2 2 2 0 KH domain RNA_pol_Rpb1_5 PF04998.12 gi|433592801|ref|YP_007282297.1| - 2e-48 165.0 0.1 2.6e-48 164.6 0.1 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 DUF4355 PF14265.1 gi|433592801|ref|YP_007282297.1| - 0.94 9.4 6.5 10 6.1 0.0 3.1 3 0 0 3 3 3 0 Domain of unknown function (DUF4355) RNA_pol_Rpb1_1 PF04997.7 gi|433592802|ref|YP_007282298.1| - 1.2e-89 300.9 0.0 2.3e-89 299.9 0.0 1.5 1 1 0 1 1 1 1 RNA polymerase Rpb1, domain 1 RNA_pol_Rpb1_2 PF00623.15 gi|433592802|ref|YP_007282298.1| - 2.6e-65 219.3 0.1 4.4e-65 218.6 0.1 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 2 RNA_pol_Rpb1_4 PF05000.12 gi|433592802|ref|YP_007282298.1| - 7.7e-32 109.2 0.0 1.8e-31 108.0 0.0 1.7 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 4 RNA_pol_Rpb1_5 PF04998.12 gi|433592802|ref|YP_007282298.1| - 5.1e-29 101.3 0.0 1e-28 100.3 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 RNA_pol_Rpb1_3 PF04983.13 gi|433592802|ref|YP_007282298.1| - 4.4e-27 94.7 0.0 7.7e-27 93.9 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 3 RNA_pol_Rpb2_6 PF00562.23 gi|433592803|ref|YP_007282299.1| - 9.7e-123 409.7 0.0 1.4e-122 409.1 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 6 RNA_pol_Rpb2_7 PF04560.15 gi|433592803|ref|YP_007282299.1| - 5.2e-29 100.3 0.1 1.1e-28 99.2 0.1 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 7 RNA_pol_Rpb2_4 PF04566.8 gi|433592803|ref|YP_007282299.1| - 4.7e-25 87.1 0.6 9.5e-25 86.1 0.4 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 4 RNA_pol_Rpb2_5 PF04567.12 gi|433592803|ref|YP_007282299.1| - 9.6e-11 41.4 4.0 2e-10 40.4 2.8 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 5 DZR PF12773.2 gi|433592803|ref|YP_007282299.1| - 0.023 14.4 0.5 0.041 13.7 0.4 1.3 1 0 0 1 1 1 0 Double zinc ribbon OrfB_Zn_ribbon PF07282.6 gi|433592803|ref|YP_007282299.1| - 0.028 14.0 1.5 0.054 13.1 1.0 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Auto_anti-p27 PF06677.7 gi|433592803|ref|YP_007282299.1| - 0.094 12.4 0.5 0.18 11.6 0.4 1.4 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-ribbon_3 PF13248.1 gi|433592803|ref|YP_007282299.1| - 1.2 8.4 5.0 5.8 6.2 0.4 2.1 1 1 1 2 2 2 0 zinc-ribbon domain RNA_pol_Rpb2_1 PF04563.10 gi|433592804|ref|YP_007282300.1| - 8.3e-55 184.8 0.0 1e-54 184.5 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase beta subunit RNA_pol_Rpb2_2 PF04561.9 gi|433592804|ref|YP_007282300.1| - 1.1e-27 96.7 0.1 1.7e-27 96.0 0.1 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 2 RNA_pol_Rpb2_3 PF04565.11 gi|433592804|ref|YP_007282300.1| - 1.1e-20 73.0 0.0 2.1e-20 72.2 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 3 DUF1359 PF07097.6 gi|433592804|ref|YP_007282300.1| - 0.2 11.6 1.9 0.67 10.0 0.0 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF1359) RNA_pol_Rpb5_C PF01191.14 gi|433592805|ref|YP_007282301.1| - 1.1e-25 89.0 0.8 1.2e-25 88.8 0.5 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb5, C-terminal domain DUF3006 PF11213.3 gi|433592805|ref|YP_007282301.1| - 0.0011 18.7 0.8 0.13 12.0 0.6 2.2 1 1 0 1 1 1 1 Protein of unknown function (DUF3006) PDDEXK_5 PF11645.3 gi|433592806|ref|YP_007282302.1| - 2.7e-09 36.8 0.0 3e-09 36.7 0.0 1.0 1 0 0 1 1 1 1 PD-(D/E)XK endonuclease TAXi_N PF14543.1 gi|433592806|ref|YP_007282302.1| - 0.0056 16.6 0.0 0.0087 16.0 0.0 1.4 1 1 0 1 1 1 1 Xylanase inhibitor N-terminal Response_reg PF00072.19 gi|433592807|ref|YP_007282303.1| - 3.9e-22 78.3 0.0 1e-21 76.9 0.0 1.7 1 0 0 1 1 1 1 Response regulator receiver domain GAF_2 PF13185.1 gi|433592807|ref|YP_007282303.1| - 4.8e-21 75.8 6.3 4.2e-14 53.2 0.6 2.5 2 0 0 2 2 2 2 GAF domain HTH_10 PF04967.7 gi|433592807|ref|YP_007282303.1| - 2.1e-20 72.0 0.0 5.6e-20 70.6 0.0 1.8 1 0 0 1 1 1 1 HTH DNA binding domain GAF_3 PF13492.1 gi|433592807|ref|YP_007282303.1| - 2.6e-17 63.1 0.2 7.1e-08 32.6 0.0 2.6 2 0 0 2 2 2 2 GAF domain GAF PF01590.21 gi|433592807|ref|YP_007282303.1| - 2e-06 28.0 1.4 0.00021 21.4 0.1 2.9 2 1 0 2 2 2 1 GAF domain OKR_DC_1_N PF03709.10 gi|433592807|ref|YP_007282303.1| - 0.00022 21.2 1.0 0.0013 18.7 0.0 2.8 4 0 0 4 4 4 1 Orn/Lys/Arg decarboxylase, N-terminal domain PCMT PF01135.14 gi|433592808|ref|YP_007282304.1| - 5.2e-35 120.9 0.0 6.6e-35 120.5 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MTS PF05175.9 gi|433592808|ref|YP_007282304.1| - 1.9e-06 27.3 0.0 3.1e-06 26.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_18 PF12847.2 gi|433592808|ref|YP_007282304.1| - 5.9e-06 26.8 0.1 1e-05 26.0 0.1 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|433592808|ref|YP_007282304.1| - 1.5e-05 24.6 0.0 1.9e-05 24.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|433592808|ref|YP_007282304.1| - 0.00046 20.2 1.2 0.00046 20.2 0.9 1.7 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|433592808|ref|YP_007282304.1| - 0.0022 18.4 0.0 0.0045 17.4 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Fibrillarin PF01269.12 gi|433592808|ref|YP_007282304.1| - 0.0029 16.5 0.0 0.0039 16.1 0.0 1.1 1 0 0 1 1 1 1 Fibrillarin RrnaAD PF00398.15 gi|433592808|ref|YP_007282304.1| - 0.049 12.6 0.0 0.069 12.1 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase PrmA PF06325.8 gi|433592808|ref|YP_007282304.1| - 0.066 12.3 0.1 0.098 11.7 0.1 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) ACP_syn_III_C PF08541.5 gi|433592808|ref|YP_007282304.1| - 0.092 12.7 0.1 0.19 11.7 0.0 1.4 1 0 0 1 1 1 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal PCMT PF01135.14 gi|433592809|ref|YP_007282305.1| - 1.4e-61 207.6 0.0 1.6e-61 207.4 0.0 1.0 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_18 PF12847.2 gi|433592809|ref|YP_007282305.1| - 1.6e-14 54.4 0.0 2.6e-14 53.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|433592809|ref|YP_007282305.1| - 2.5e-11 43.4 0.0 3.2e-11 43.0 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|433592809|ref|YP_007282305.1| - 3.7e-09 36.6 0.2 8.1e-09 35.5 0.1 1.6 1 1 0 1 1 1 1 Methyltransferase domain CMAS PF02353.15 gi|433592809|ref|YP_007282305.1| - 3.1e-05 23.2 0.0 4.5e-05 22.6 0.0 1.3 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_11 PF08241.7 gi|433592809|ref|YP_007282305.1| - 5.1e-05 23.6 0.0 9.3e-05 22.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|433592809|ref|YP_007282305.1| - 9.6e-05 21.8 0.0 0.00015 21.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_25 PF13649.1 gi|433592809|ref|YP_007282305.1| - 0.00011 22.4 0.0 0.00018 21.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|433592809|ref|YP_007282305.1| - 0.00016 22.0 0.0 0.00024 21.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain GCD14 PF08704.5 gi|433592809|ref|YP_007282305.1| - 0.00073 19.1 0.0 0.001 18.6 0.0 1.2 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit RrnaAD PF00398.15 gi|433592809|ref|YP_007282305.1| - 0.0033 16.5 0.0 0.0051 15.8 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_24 PF13578.1 gi|433592809|ref|YP_007282305.1| - 0.01 16.6 0.0 0.02 15.7 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_23 PF13489.1 gi|433592809|ref|YP_007282305.1| - 0.012 15.2 0.0 0.018 14.7 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain DUF938 PF06080.7 gi|433592809|ref|YP_007282305.1| - 0.013 15.0 0.0 0.018 14.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF938) Fibrillarin PF01269.12 gi|433592809|ref|YP_007282305.1| - 0.018 14.0 0.0 0.024 13.5 0.0 1.1 1 0 0 1 1 1 0 Fibrillarin Methyltransf_3 PF01596.12 gi|433592809|ref|YP_007282305.1| - 0.024 13.6 0.0 0.036 13.0 0.0 1.3 1 0 0 1 1 1 0 O-methyltransferase Methyltransf_32 PF13679.1 gi|433592809|ref|YP_007282305.1| - 0.049 13.3 0.0 0.078 12.6 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_4 PF02390.12 gi|433592809|ref|YP_007282305.1| - 0.12 11.4 0.0 0.16 11.0 0.0 1.2 1 0 0 1 1 1 0 Putative methyltransferase zinc_ribbon_5 PF13719.1 gi|433592810|ref|YP_007282306.1| - 0.014 15.0 0.5 0.031 13.8 0.3 1.6 1 1 0 1 1 1 0 zinc-ribbon domain Lar_restr_allev PF14354.1 gi|433592810|ref|YP_007282306.1| - 0.022 15.0 1.1 0.059 13.6 0.8 1.7 1 0 0 1 1 1 0 Restriction alleviation protein Lar Pyocin_S PF06958.7 gi|433592810|ref|YP_007282306.1| - 0.03 14.6 1.7 0.046 14.0 0.9 1.6 1 1 0 1 1 1 0 S-type Pyocin Fibrinogen_aC PF12160.3 gi|433592810|ref|YP_007282306.1| - 0.12 11.7 3.0 0.12 11.8 0.6 2.1 2 0 0 2 2 2 0 Fibrinogen alpha C domain zinc_ribbon_4 PF13717.1 gi|433592810|ref|YP_007282306.1| - 0.13 11.9 2.0 0.41 10.3 1.4 1.8 1 1 0 1 1 1 0 zinc-ribbon domain Y_Y_Y PF07495.8 gi|433592810|ref|YP_007282306.1| - 0.14 11.8 0.0 1.5 8.6 0.0 2.2 2 0 0 2 2 2 0 Y_Y_Y domain Tub_2 PF04525.7 gi|433592811|ref|YP_007282307.1| - 5.4e-08 32.4 0.2 5.8e-05 22.5 0.1 3.0 1 1 2 3 3 3 3 Tubby C 2 Big_3_2 PF12245.3 gi|433592811|ref|YP_007282307.1| - 0.038 13.5 0.1 0.21 11.1 0.0 2.1 2 0 0 2 2 2 0 Bacterial Ig-like domain (group 3) Peptidase_M29 PF02073.10 gi|433592812|ref|YP_007282308.1| - 1.9e-19 69.7 1.0 2.8e-18 65.8 0.1 2.1 2 0 0 2 2 2 2 Thermophilic metalloprotease (M29) Gp_dh_C PF02800.15 gi|433592813|ref|YP_007282309.1| - 3.6e-18 65.4 0.0 5.8e-18 64.8 0.0 1.4 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Gp_dh_N PF00044.19 gi|433592813|ref|YP_007282309.1| - 3.7e-17 62.6 0.0 1.3e-16 60.9 0.0 1.9 1 1 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DapB_N PF01113.15 gi|433592813|ref|YP_007282309.1| - 1.3e-09 38.0 0.0 4e-09 36.4 0.0 1.8 2 0 0 2 2 2 1 Dihydrodipicolinate reductase, N-terminus NAD_binding_3 PF03447.11 gi|433592813|ref|YP_007282309.1| - 3.4e-05 24.2 0.1 9.2e-05 22.8 0.1 1.7 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain Semialdhyde_dh PF01118.19 gi|433592813|ref|YP_007282309.1| - 0.0011 19.2 0.0 0.0023 18.2 0.0 1.5 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|433592813|ref|YP_007282309.1| - 0.0013 17.8 0.1 0.0087 15.2 0.1 2.1 1 1 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TrkA_N PF02254.13 gi|433592813|ref|YP_007282309.1| - 0.0033 17.4 0.0 0.0092 15.9 0.0 1.7 1 0 0 1 1 1 1 TrkA-N domain GFO_IDH_MocA PF01408.17 gi|433592813|ref|YP_007282309.1| - 0.0039 17.6 0.1 0.011 16.2 0.0 1.8 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold IlvN PF07991.7 gi|433592813|ref|YP_007282309.1| - 0.12 11.7 0.1 2.5 7.4 0.0 2.3 1 1 1 2 2 2 0 Acetohydroxy acid isomeroreductase, catalytic domain HSP20 PF00011.16 gi|433592814|ref|YP_007282310.1| - 2.1e-10 40.3 0.1 3.5e-09 36.4 0.1 2.1 1 1 0 1 1 1 1 Hsp20/alpha crystallin family GvpH PF05455.6 gi|433592814|ref|YP_007282310.1| - 7.4e-09 35.4 1.9 9.5e-09 35.1 1.3 1.1 1 0 0 1 1 1 1 GvpH CS PF04969.11 gi|433592814|ref|YP_007282310.1| - 0.0018 18.7 0.0 0.0039 17.6 0.0 1.5 2 0 0 2 2 2 1 CS domain PIH1 PF08190.7 gi|433592814|ref|YP_007282310.1| - 0.025 14.0 0.0 0.032 13.6 0.0 1.1 1 0 0 1 1 1 0 pre-RNA processing PIH1/Nop17 Sipho_Gp37 PF14594.1 gi|433592814|ref|YP_007282310.1| - 0.042 13.0 0.0 0.052 12.7 0.0 1.2 1 0 0 1 1 1 0 Siphovirus ReqiPepy6 Gp37-like protein RimK PF08443.6 gi|433592815|ref|YP_007282311.1| - 9.7e-24 83.8 0.0 1.3e-23 83.4 0.0 1.1 1 0 0 1 1 1 1 RimK-like ATP-grasp domain ATP-grasp_4 PF13535.1 gi|433592815|ref|YP_007282311.1| - 2e-15 57.0 0.0 3.1e-15 56.3 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain GSH-S_ATP PF02955.11 gi|433592815|ref|YP_007282311.1| - 7.7e-11 41.4 0.0 1.1e-10 40.8 0.0 1.2 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_3 PF02655.9 gi|433592815|ref|YP_007282311.1| - 1.4e-07 31.4 0.0 2.4e-07 30.7 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|433592815|ref|YP_007282311.1| - 2.7e-06 26.3 0.0 5e-06 25.4 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp PF02222.17 gi|433592815|ref|YP_007282311.1| - 0.00029 20.2 0.0 0.00041 19.7 0.0 1.1 1 0 0 1 1 1 1 ATP-grasp domain Dala_Dala_lig_C PF07478.8 gi|433592815|ref|YP_007282311.1| - 0.00091 18.6 0.0 0.0042 16.4 0.0 1.9 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus CPSase_L_D2 PF02786.12 gi|433592815|ref|YP_007282311.1| - 0.0055 16.0 0.0 0.0091 15.3 0.0 1.3 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain TTL PF03133.10 gi|433592815|ref|YP_007282311.1| - 0.0063 15.4 0.0 0.054 12.4 0.0 1.9 2 0 0 2 2 2 1 Tubulin-tyrosine ligase family ATPgrasp_ST PF14397.1 gi|433592815|ref|YP_007282311.1| - 0.014 14.5 0.0 0.043 12.9 0.0 1.7 2 0 0 2 2 2 0 Sugar-transfer associated ATP-grasp ATPgrasp_TupA PF14305.1 gi|433592815|ref|YP_007282311.1| - 0.016 14.5 0.0 0.3 10.3 0.0 2.1 2 0 0 2 2 2 0 TupA-like ATPgrasp Ribosomal_L16 PF00252.13 gi|433592816|ref|YP_007282312.1| - 1.4e-30 105.7 0.1 1.6e-30 105.5 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L16p/L10e TrmB PF01978.14 gi|433592817|ref|YP_007282313.1| - 0.00016 21.3 0.1 0.0002 20.9 0.1 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|433592817|ref|YP_007282313.1| - 0.00039 20.0 0.4 0.00055 19.5 0.2 1.3 1 1 0 1 1 1 1 MarR family MotA_activ PF09114.5 gi|433592817|ref|YP_007282313.1| - 0.0031 17.2 0.0 0.0035 17.0 0.0 1.1 1 0 0 1 1 1 1 Transcription factor MotA, activation domain RNA_pol_Rpc34 PF05158.7 gi|433592817|ref|YP_007282313.1| - 0.09 11.9 0.0 0.11 11.7 0.0 1.0 1 0 0 1 1 1 0 RNA polymerase Rpc34 subunit CBS PF00571.23 gi|433592818|ref|YP_007282314.1| - 4.9e-25 87.0 5.3 2.3e-12 46.4 0.3 2.6 2 1 0 2 2 2 2 CBS domain Peptidase_M50 PF02163.17 gi|433592818|ref|YP_007282314.1| - 3.7e-21 74.9 9.6 2.3e-15 56.0 2.7 2.7 1 1 2 3 3 3 2 Peptidase family M50 Peptidase_M50B PF13398.1 gi|433592818|ref|YP_007282314.1| - 0.013 14.8 0.1 0.013 14.8 0.1 2.2 1 1 0 2 2 2 0 Peptidase M50B-like Peptidase_MA_2 PF13485.1 gi|433592818|ref|YP_007282314.1| - 0.031 14.3 0.0 0.064 13.2 0.0 1.4 1 0 0 1 1 1 0 Peptidase MA superfamily DUF4395 PF14340.1 gi|433592818|ref|YP_007282314.1| - 0.22 11.6 9.2 0.054 13.5 4.0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4395) ABC_tran PF00005.22 gi|433592819|ref|YP_007282315.1| - 2.2e-31 108.9 0.0 3.4e-31 108.3 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|433592819|ref|YP_007282315.1| - 1.2e-15 58.2 0.3 7.5e-10 39.2 0.0 2.2 1 1 1 2 2 2 2 AAA domain AAA_10 PF12846.2 gi|433592819|ref|YP_007282315.1| - 3.2e-05 23.5 0.0 6.5e-05 22.5 0.0 1.5 1 0 0 1 1 1 1 AAA-like domain DUF4162 PF13732.1 gi|433592819|ref|YP_007282315.1| - 0.00015 22.2 0.0 0.00035 21.0 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) IstB_IS21 PF01695.12 gi|433592819|ref|YP_007282315.1| - 0.0025 17.2 0.1 0.78 9.1 0.0 2.3 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_23 PF13476.1 gi|433592819|ref|YP_007282315.1| - 0.0047 17.2 0.0 0.018 15.3 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|433592819|ref|YP_007282315.1| - 0.0063 16.5 0.3 0.03 14.2 0.0 2.4 1 1 1 2 2 2 1 AAA ATPase domain DUF258 PF03193.11 gi|433592819|ref|YP_007282315.1| - 0.0079 15.3 0.0 0.032 13.4 0.0 1.8 2 0 0 2 2 2 1 Protein of unknown function, DUF258 SMC_N PF02463.14 gi|433592819|ref|YP_007282315.1| - 0.013 14.7 0.0 1.3 8.1 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_30 PF13604.1 gi|433592819|ref|YP_007282315.1| - 0.02 14.5 0.0 0.075 12.6 0.0 1.9 2 1 0 2 2 2 0 AAA domain AAA_29 PF13555.1 gi|433592819|ref|YP_007282315.1| - 0.02 14.3 0.1 0.04 13.4 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain Arch_ATPase PF01637.13 gi|433592819|ref|YP_007282315.1| - 0.033 13.8 0.0 0.063 12.9 0.0 1.4 1 0 0 1 1 1 0 Archaeal ATPase MecA PF05389.7 gi|433592819|ref|YP_007282315.1| - 0.057 12.9 0.4 0.2 11.1 0.1 1.9 2 0 0 2 2 2 0 Negative regulator of genetic competence (MecA) AAA_25 PF13481.1 gi|433592819|ref|YP_007282315.1| - 0.058 12.7 0.1 0.17 11.3 0.1 1.9 1 1 0 1 1 1 0 AAA domain UPF0079 PF02367.12 gi|433592819|ref|YP_007282315.1| - 0.059 12.9 0.2 0.11 12.1 0.1 1.4 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_33 PF13671.1 gi|433592819|ref|YP_007282315.1| - 0.081 12.7 0.1 0.16 11.8 0.1 1.9 1 1 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.18 gi|433592819|ref|YP_007282315.1| - 0.14 12.1 0.0 0.34 10.8 0.0 1.7 2 0 0 2 2 2 0 50S ribosome-binding GTPase SRP54 PF00448.17 gi|433592819|ref|YP_007282315.1| - 0.14 11.5 0.0 0.25 10.7 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain ATP_bind_1 PF03029.12 gi|433592819|ref|YP_007282315.1| - 0.15 11.6 0.1 0.44 10.0 0.0 1.7 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA_15 PF13175.1 gi|433592819|ref|YP_007282315.1| - 0.19 10.7 0.0 2.9 6.8 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain ABC2_membrane PF01061.19 gi|433592820|ref|YP_007282316.1| - 4.4e-29 101.1 14.2 5.9e-29 100.7 9.8 1.2 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|433592820|ref|YP_007282316.1| - 0.13 11.2 18.0 0.063 12.2 11.2 1.3 1 1 0 1 1 1 0 ABC-2 family transporter protein Tic20 PF09685.5 gi|433592821|ref|YP_007282317.1| - 3.9e-24 84.7 4.2 4.6e-24 84.5 2.9 1.0 1 0 0 1 1 1 1 Tic20-like protein zinc_ribbon_2 PF13240.1 gi|433592821|ref|YP_007282317.1| - 6.3e-08 31.8 3.5 1.1e-07 31.0 2.4 1.4 1 0 0 1 1 1 1 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|433592821|ref|YP_007282317.1| - 1.9e-07 30.0 6.9 2.3e-07 29.8 3.2 2.0 2 0 0 2 2 2 1 zinc-ribbon domain DZR PF12773.2 gi|433592821|ref|YP_007282317.1| - 3e-06 26.9 0.3 4.4e-06 26.4 0.2 1.3 1 0 0 1 1 1 1 Double zinc ribbon UPF0547 PF10571.4 gi|433592821|ref|YP_007282317.1| - 0.00048 19.7 2.2 0.00086 18.9 1.5 1.4 1 0 0 1 1 1 1 Uncharacterised protein family UPF0547 VIT1 PF01988.14 gi|433592821|ref|YP_007282317.1| - 0.0039 16.7 0.3 0.0063 16.0 0.2 1.3 1 1 0 1 1 1 1 VIT family Nudix_N_2 PF14803.1 gi|433592821|ref|YP_007282317.1| - 0.0068 16.0 1.2 0.46 10.2 0.0 2.4 2 0 0 2 2 2 1 Nudix N-terminal Prominin PF05478.6 gi|433592821|ref|YP_007282317.1| - 0.1 10.0 1.4 0.13 9.7 0.9 1.1 1 0 0 1 1 1 0 Prominin SK_channel PF03530.9 gi|433592821|ref|YP_007282317.1| - 0.11 12.3 0.2 0.14 11.9 0.2 1.3 1 0 0 1 1 1 0 Calcium-activated SK potassium channel DUF2116 PF09889.4 gi|433592821|ref|YP_007282317.1| - 0.22 11.3 5.7 0.25 11.1 1.0 2.6 3 0 0 3 3 3 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) zf-NADH-PPase PF09297.6 gi|433592821|ref|YP_007282317.1| - 0.56 9.7 2.1 21 4.7 0.0 2.4 1 1 1 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zf-IS66 PF13005.2 gi|433592821|ref|YP_007282317.1| - 1.7 8.7 4.2 1.6 8.7 0.2 2.2 1 1 1 2 2 2 0 zinc-finger binding domain of transposase IS66 TF_Zn_Ribbon PF08271.7 gi|433592821|ref|YP_007282317.1| - 1.7 8.0 5.3 5.4 6.4 3.7 1.8 1 1 0 1 1 1 0 TFIIB zinc-binding ADH_zinc_N PF00107.21 gi|433592822|ref|YP_007282318.1| - 9.5e-19 67.2 0.0 1.4e-18 66.7 0.0 1.2 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.1 gi|433592822|ref|YP_007282318.1| - 4.8e-08 33.9 0.0 1.7e-07 32.2 0.0 1.9 2 0 0 2 2 2 1 Zinc-binding dehydrogenase Pro_CA PF00484.14 gi|433592823|ref|YP_007282319.1| - 5.4e-24 84.9 0.0 7.8e-24 84.4 0.0 1.2 1 0 0 1 1 1 1 Carbonic anhydrase DUF2309 PF10070.4 gi|433592824|ref|YP_007282320.1| - 4.9e-260 864.9 0.0 9.4e-260 864.0 0.0 1.4 1 1 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2309) DUF4404 PF14357.1 gi|433592824|ref|YP_007282320.1| - 0.2 12.0 3.9 0.14 12.6 0.5 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4404) Oxidored_q1 PF00361.15 gi|433592825|ref|YP_007282321.1| - 1.5e-37 129.3 10.2 4.3e-37 127.8 7.1 1.8 1 0 0 1 1 1 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1_N PF00662.15 gi|433592825|ref|YP_007282321.1| - 8.7e-10 38.0 0.1 8.7e-10 38.0 0.0 2.4 3 0 0 3 3 3 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus OCIA PF07051.6 gi|433592825|ref|YP_007282321.1| - 0.18 11.2 1.2 0.42 10.0 0.1 2.1 2 0 0 2 2 2 0 Ovarian carcinoma immunoreactive antigen (OCIA) HTH_24 PF13412.1 gi|433592826|ref|YP_007282322.1| - 3.2e-15 55.2 0.5 4.8e-15 54.6 0.3 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|433592826|ref|YP_007282322.1| - 9.8e-11 41.0 2.5 1.6e-10 40.2 1.7 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.7 gi|433592826|ref|YP_007282322.1| - 6e-09 35.4 0.1 1.5e-08 34.1 0.1 1.6 1 0 0 1 1 1 1 HTH domain MarR_2 PF12802.2 gi|433592826|ref|YP_007282322.1| - 1.8e-06 27.5 0.0 3.4e-06 26.6 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|433592826|ref|YP_007282322.1| - 2.9e-06 26.7 0.0 5.4e-06 25.9 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_20 PF12840.2 gi|433592826|ref|YP_007282322.1| - 1.3e-05 24.9 0.0 2.8e-05 23.8 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain Fe_dep_repress PF01325.14 gi|433592826|ref|YP_007282322.1| - 4.8e-05 23.2 0.2 0.00012 21.9 0.1 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_5 PF01022.15 gi|433592826|ref|YP_007282322.1| - 8.9e-05 22.0 0.0 0.00018 21.0 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_DeoR PF08220.7 gi|433592826|ref|YP_007282322.1| - 0.00016 21.1 0.2 0.011 15.1 0.1 2.3 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain Rrf2 PF02082.15 gi|433592826|ref|YP_007282322.1| - 0.00018 21.5 0.1 0.00036 20.6 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator Sigma70_r4_2 PF08281.7 gi|433592826|ref|YP_007282322.1| - 0.00032 20.1 0.2 0.00065 19.1 0.1 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HrcA_DNA-bdg PF03444.10 gi|433592826|ref|YP_007282322.1| - 0.0018 17.6 0.0 0.0032 16.8 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_38 PF13936.1 gi|433592826|ref|YP_007282322.1| - 0.0019 17.6 0.6 0.0062 16.0 0.4 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain GntR PF00392.16 gi|433592826|ref|YP_007282322.1| - 0.0021 17.4 0.1 0.0043 16.4 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_27 PF13463.1 gi|433592826|ref|YP_007282322.1| - 0.0024 18.1 0.0 0.0048 17.1 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_23 PF13384.1 gi|433592826|ref|YP_007282322.1| - 0.0025 17.4 0.1 0.0045 16.6 0.1 1.4 1 0 0 1 1 1 1 Homeodomain-like domain TrmB PF01978.14 gi|433592826|ref|YP_007282322.1| - 0.0033 17.0 0.2 0.0058 16.2 0.1 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB DUF2250 PF10007.4 gi|433592826|ref|YP_007282322.1| - 0.0035 17.2 0.0 0.013 15.3 0.0 1.8 2 0 0 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2250) MarR PF01047.17 gi|433592826|ref|YP_007282322.1| - 0.0037 16.9 0.0 0.007 16.0 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_CodY PF08222.6 gi|433592826|ref|YP_007282322.1| - 0.0052 16.0 0.6 0.025 13.9 0.1 2.1 2 0 0 2 2 2 1 CodY helix-turn-helix domain HTH_12 PF08461.5 gi|433592826|ref|YP_007282322.1| - 0.006 16.2 0.3 0.027 14.1 0.2 2.1 2 1 0 2 2 2 1 Ribonuclease R winged-helix domain HTH_Mga PF08280.6 gi|433592826|ref|YP_007282322.1| - 0.0088 15.7 0.0 0.015 15.0 0.0 1.4 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain Sigma70_r4 PF04545.11 gi|433592826|ref|YP_007282322.1| - 0.0093 15.2 0.3 0.017 14.4 0.2 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_1 PF00126.22 gi|433592826|ref|YP_007282322.1| - 0.061 13.0 0.6 0.29 10.9 0.2 1.9 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_28 PF13518.1 gi|433592826|ref|YP_007282322.1| - 0.061 13.3 0.1 0.11 12.5 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain RPA_C PF08784.6 gi|433592826|ref|YP_007282322.1| - 0.063 13.6 0.0 0.11 12.8 0.0 1.4 1 0 0 1 1 1 0 Replication protein A C terminal Put_DNA-bind_N PF06971.8 gi|433592826|ref|YP_007282322.1| - 0.076 12.7 0.7 0.16 11.7 0.5 1.5 1 0 0 1 1 1 0 Putative DNA-binding protein N-terminus Nuc_N PF14448.1 gi|433592826|ref|YP_007282322.1| - 0.22 11.1 1.2 0.29 10.7 0.2 1.6 2 0 0 2 2 1 0 Nuclease N terminal DUF805 PF05656.9 gi|433592827|ref|YP_007282323.1| - 0.0059 16.4 0.3 0.0072 16.1 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF805) Rhomboid PF01694.17 gi|433592827|ref|YP_007282323.1| - 0.024 14.6 1.7 0.029 14.4 1.2 1.0 1 0 0 1 1 1 0 Rhomboid family MARVEL PF01284.18 gi|433592827|ref|YP_007282323.1| - 0.05 13.4 1.6 0.062 13.1 1.1 1.1 1 0 0 1 1 1 0 Membrane-associating domain NADH-u_ox-rdase PF10785.4 gi|433592827|ref|YP_007282323.1| - 0.19 12.0 1.5 0.24 11.6 1.0 1.1 1 0 0 1 1 1 0 NADH-ubiquinone oxidoreductase complex I, 21 kDa subunit CSD PF00313.17 gi|433592828|ref|YP_007282324.1| - 3.3e-20 71.6 0.1 3.6e-20 71.5 0.0 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain S1-like PF14444.1 gi|433592828|ref|YP_007282324.1| - 0.039 13.6 0.3 0.048 13.3 0.2 1.4 1 1 0 1 1 1 0 S1-like OB_RNB PF08206.6 gi|433592828|ref|YP_007282324.1| - 0.043 13.3 2.7 0.055 12.9 1.8 1.2 1 0 0 1 1 1 0 Ribonuclease B OB domain Cupin_2 PF07883.6 gi|433592830|ref|YP_007282326.1| - 8.8e-18 63.5 0.2 1.1e-17 63.2 0.2 1.2 1 0 0 1 1 1 1 Cupin domain Cupin_1 PF00190.17 gi|433592830|ref|YP_007282326.1| - 1e-08 34.7 0.0 1.5e-08 34.2 0.0 1.3 1 0 0 1 1 1 1 Cupin AraC_binding PF02311.14 gi|433592830|ref|YP_007282326.1| - 5.9e-07 29.2 0.0 7.7e-07 28.8 0.0 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain MannoseP_isomer PF01050.13 gi|433592830|ref|YP_007282326.1| - 0.00019 21.0 0.0 0.00024 20.7 0.0 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase Cupin_3 PF05899.7 gi|433592830|ref|YP_007282326.1| - 0.00066 19.0 0.0 0.00095 18.5 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF861) CENP-C_C PF11699.3 gi|433592830|ref|YP_007282326.1| - 0.0042 17.0 0.0 0.0056 16.6 0.0 1.2 1 0 0 1 1 1 1 Mif2/CENP-C like Cupin_6 PF12852.2 gi|433592830|ref|YP_007282326.1| - 0.0046 16.5 0.0 0.0054 16.3 0.0 1.1 1 0 0 1 1 1 1 Cupin ARD PF03079.9 gi|433592830|ref|YP_007282326.1| - 0.0079 16.1 0.0 0.011 15.7 0.0 1.2 1 0 0 1 1 1 1 ARD/ARD' family Cupin_7 PF12973.2 gi|433592830|ref|YP_007282326.1| - 0.014 15.2 0.0 0.018 14.8 0.0 1.2 1 0 0 1 1 1 0 ChrR Cupin-like domain FecCD PF01032.13 gi|433592831|ref|YP_007282327.1| - 3.5e-85 285.5 37.6 4.3e-85 285.2 26.1 1.0 1 0 0 1 1 1 1 FecCD transport family ABC_tran PF00005.22 gi|433592832|ref|YP_007282328.1| - 2.5e-31 108.8 0.0 3.3e-31 108.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|433592832|ref|YP_007282328.1| - 7.9e-14 52.3 0.6 9.9e-07 28.9 0.1 2.1 1 1 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|433592832|ref|YP_007282328.1| - 1.7e-11 43.8 0.4 3.7e-10 39.3 0.2 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain ABC_ATPase PF09818.4 gi|433592832|ref|YP_007282328.1| - 2.2e-07 29.8 0.0 0.00061 18.4 0.0 2.9 2 1 0 2 2 2 2 Predicted ATPase of the ABC class AAA_29 PF13555.1 gi|433592832|ref|YP_007282328.1| - 4.8e-07 29.2 0.0 1e-06 28.1 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|433592832|ref|YP_007282328.1| - 4.6e-06 25.9 0.0 0.015 14.3 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_22 PF13401.1 gi|433592832|ref|YP_007282328.1| - 1.1e-05 25.6 0.6 0.00011 22.3 0.4 2.1 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|433592832|ref|YP_007282328.1| - 1.2e-05 25.4 1.5 4.8e-05 23.4 1.1 2.1 1 1 0 1 1 1 1 AAA ATPase domain AAA_17 PF13207.1 gi|433592832|ref|YP_007282328.1| - 1.4e-05 25.8 0.1 3e-05 24.8 0.1 1.8 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|433592832|ref|YP_007282328.1| - 1.5e-05 24.4 0.9 0.00011 21.6 0.6 2.2 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|433592832|ref|YP_007282328.1| - 7.2e-05 23.2 0.1 0.00016 22.0 0.0 1.4 1 1 0 1 1 1 1 AAA domain HD PF01966.17 gi|433592832|ref|YP_007282328.1| - 0.00048 20.1 0.0 0.0011 18.9 0.0 1.6 1 0 0 1 1 1 1 HD domain ATP_bind_1 PF03029.12 gi|433592832|ref|YP_007282328.1| - 0.00049 19.7 0.1 0.018 14.6 0.0 2.2 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein AAA_18 PF13238.1 gi|433592832|ref|YP_007282328.1| - 0.00056 20.2 0.0 0.001 19.3 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|433592832|ref|YP_007282328.1| - 0.00061 19.6 0.2 0.0017 18.2 0.2 1.9 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|433592832|ref|YP_007282328.1| - 0.001 18.2 0.0 0.0018 17.4 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 Mg_chelatase PF01078.16 gi|433592832|ref|YP_007282328.1| - 0.0012 18.0 0.1 1.1 8.3 0.0 2.2 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_30 PF13604.1 gi|433592832|ref|YP_007282328.1| - 0.0021 17.6 0.1 0.0054 16.3 0.0 1.7 2 1 0 2 2 2 1 AAA domain AAA_14 PF13173.1 gi|433592832|ref|YP_007282328.1| - 0.0028 17.5 0.0 0.012 15.5 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_28 PF13521.1 gi|433592832|ref|YP_007282328.1| - 0.0037 17.2 0.0 0.008 16.1 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_5 PF07728.9 gi|433592832|ref|YP_007282328.1| - 0.0038 16.9 0.0 0.0064 16.2 0.0 1.5 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) MMR_HSR1 PF01926.18 gi|433592832|ref|YP_007282328.1| - 0.0059 16.5 0.0 0.011 15.6 0.0 1.7 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA PF00004.24 gi|433592832|ref|YP_007282328.1| - 0.0062 16.7 0.0 0.012 15.8 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_10 PF12846.2 gi|433592832|ref|YP_007282328.1| - 0.0085 15.5 0.6 0.027 13.9 0.1 1.9 1 1 1 2 2 2 1 AAA-like domain cobW PF02492.14 gi|433592832|ref|YP_007282328.1| - 0.0086 15.5 0.3 0.088 12.2 0.1 2.2 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain NACHT PF05729.7 gi|433592832|ref|YP_007282328.1| - 0.0086 15.7 0.1 0.028 14.0 0.0 1.8 2 0 0 2 2 2 1 NACHT domain Zeta_toxin PF06414.7 gi|433592832|ref|YP_007282328.1| - 0.011 14.8 0.0 0.02 13.9 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin MobB PF03205.9 gi|433592832|ref|YP_007282328.1| - 0.012 15.2 0.0 0.048 13.3 0.0 2.0 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B DUF2813 PF11398.3 gi|433592832|ref|YP_007282328.1| - 0.016 14.3 0.0 0.022 13.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2813) SRP54 PF00448.17 gi|433592832|ref|YP_007282328.1| - 0.023 14.1 0.0 0.051 13.0 0.0 1.6 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain RNA_helicase PF00910.17 gi|433592832|ref|YP_007282328.1| - 0.025 14.7 0.0 0.046 13.8 0.0 1.6 1 1 0 1 1 1 0 RNA helicase UPF0079 PF02367.12 gi|433592832|ref|YP_007282328.1| - 0.034 13.7 0.0 0.062 12.9 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 KTI12 PF08433.5 gi|433592832|ref|YP_007282328.1| - 0.048 12.8 0.0 0.11 11.6 0.0 1.5 2 0 0 2 2 2 0 Chromatin associated protein KTI12 Arch_ATPase PF01637.13 gi|433592832|ref|YP_007282328.1| - 0.05 13.3 0.0 0.082 12.5 0.0 1.6 1 1 0 1 1 1 0 Archaeal ATPase APS_kinase PF01583.15 gi|433592832|ref|YP_007282328.1| - 0.05 13.2 0.0 0.095 12.3 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase ArgK PF03308.11 gi|433592832|ref|YP_007282328.1| - 0.05 12.3 0.0 0.096 11.4 0.0 1.6 1 1 0 1 1 1 0 ArgK protein AAA_19 PF13245.1 gi|433592832|ref|YP_007282328.1| - 0.072 12.8 0.0 0.21 11.3 0.0 1.8 1 0 0 1 1 1 0 Part of AAA domain Rad17 PF03215.10 gi|433592832|ref|YP_007282328.1| - 0.082 11.5 0.0 0.12 11.0 0.0 1.2 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein DUF815 PF05673.8 gi|433592832|ref|YP_007282328.1| - 0.086 11.7 0.0 0.18 10.7 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF815) SbcCD_C PF13558.1 gi|433592832|ref|YP_007282328.1| - 0.13 12.1 0.2 1.4 8.9 0.1 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit NB-ARC PF00931.17 gi|433592832|ref|YP_007282328.1| - 0.15 10.9 0.0 0.27 10.0 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain Peripla_BP_2 PF01497.13 gi|433592833|ref|YP_007282329.1| - 2.3e-20 72.7 0.1 3.4e-20 72.2 0.1 1.2 1 0 0 1 1 1 1 Periplasmic binding protein TAT_signal PF10518.4 gi|433592833|ref|YP_007282329.1| - 0.011 15.6 3.7 0.026 14.5 2.6 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Peripla_BP_2 PF01497.13 gi|433592834|ref|YP_007282330.1| - 4.9e-17 61.8 0.1 7.1e-17 61.3 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein TAT_signal PF10518.4 gi|433592834|ref|YP_007282330.1| - 0.03 14.3 0.6 0.057 13.4 0.4 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence SHNi-TPR PF10516.4 gi|433592834|ref|YP_007282330.1| - 0.05 12.8 0.3 0.094 11.9 0.2 1.5 1 0 0 1 1 1 0 SHNi-TPR MCPsignal PF00015.16 gi|433592835|ref|YP_007282331.1| - 3e-31 108.6 60.8 6.1e-30 104.3 23.4 3.7 1 1 1 3 3 3 2 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.20 gi|433592835|ref|YP_007282331.1| - 1.8e-14 53.6 1.5 1.8e-14 53.6 1.0 5.7 6 0 0 6 6 6 2 HAMP domain IncA PF04156.9 gi|433592835|ref|YP_007282331.1| - 0.017 14.6 1.1 0.017 14.6 0.8 4.3 2 1 2 5 5 5 0 IncA protein DUF948 PF06103.6 gi|433592835|ref|YP_007282331.1| - 0.11 12.3 19.8 0.1 12.4 0.4 5.1 2 2 3 5 5 5 0 Bacterial protein of unknown function (DUF948) NPV_P10 PF05531.7 gi|433592835|ref|YP_007282331.1| - 0.34 11.1 19.7 4 7.7 0.9 5.3 1 1 2 4 4 4 0 Nucleopolyhedrovirus P10 protein DUF4200 PF13863.1 gi|433592835|ref|YP_007282331.1| - 0.6 10.0 16.6 2.6 7.9 2.0 4.2 3 2 1 4 4 4 0 Domain of unknown function (DUF4200) Reo_sigmaC PF04582.7 gi|433592835|ref|YP_007282331.1| - 1.9 7.5 27.8 0.88 8.6 5.4 2.9 2 1 1 3 3 3 0 Reovirus sigma C capsid protein Prominin PF05478.6 gi|433592835|ref|YP_007282331.1| - 2.2 5.7 14.5 0.11 10.0 1.4 2.4 1 1 0 2 2 2 0 Prominin Fib_alpha PF08702.5 gi|433592835|ref|YP_007282331.1| - 2.3 8.3 10.4 7.5 6.6 0.1 3.9 3 2 2 5 5 5 0 Fibrinogen alpha/beta chain family DUF1664 PF07889.7 gi|433592835|ref|YP_007282331.1| - 3.4 7.4 19.1 1.2 8.9 1.0 4.4 3 2 1 4 4 4 0 Protein of unknown function (DUF1664) Sec34 PF04136.10 gi|433592835|ref|YP_007282331.1| - 3.8 7.2 6.3 21 4.7 0.1 3.3 1 1 3 4 4 4 0 Sec34-like family DASH_Dad2 PF08654.5 gi|433592835|ref|YP_007282331.1| - 5.6 7.0 14.2 1.5 8.8 0.7 4.5 1 1 3 4 4 4 0 DASH complex subunit Dad2 DEAD PF00270.24 gi|433592836|ref|YP_007282332.1| - 6.5e-24 84.3 0.0 1.5e-23 83.1 0.0 1.6 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|433592836|ref|YP_007282332.1| - 5.4e-13 48.6 0.0 9.5e-13 47.8 0.0 1.4 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|433592836|ref|YP_007282332.1| - 1.6e-06 28.0 0.0 3.9e-06 26.8 0.0 1.6 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit SNF2_N PF00176.18 gi|433592836|ref|YP_007282332.1| - 0.054 12.2 0.0 0.1 11.3 0.0 1.4 1 1 0 1 1 1 0 SNF2 family N-terminal domain DnaJ_CXXCXGXG PF00684.14 gi|433592836|ref|YP_007282332.1| - 0.073 13.1 0.2 0.15 12.1 0.1 1.4 1 0 0 1 1 1 0 DnaJ central domain Kri1 PF05178.7 gi|433592837|ref|YP_007282333.1| - 0.027 14.7 0.2 0.05 13.8 0.1 1.4 1 0 0 1 1 1 0 KRI1-like family Bac_luciferase PF00296.15 gi|433592837|ref|YP_007282333.1| - 0.032 13.3 0.1 0.043 12.9 0.1 1.1 1 0 0 1 1 1 0 Luciferase-like monooxygenase BofA PF07441.6 gi|433592838|ref|YP_007282334.1| - 0.00011 22.0 20.0 0.00015 21.6 13.9 1.1 1 0 0 1 1 1 1 SigmaK-factor processing regulatory protein BofA COX15-CtaA PF02628.10 gi|433592838|ref|YP_007282334.1| - 5.4 5.7 14.4 6.4 5.5 10.0 1.1 1 0 0 1 1 1 0 Cytochrome oxidase assembly protein PCNA_N PF00705.13 gi|433592839|ref|YP_007282335.1| - 2.6e-07 30.2 0.8 2.8e-06 26.8 0.0 2.2 2 0 0 2 2 2 1 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.10 gi|433592839|ref|YP_007282335.1| - 2.1e-06 27.6 0.1 4.8e-06 26.5 0.0 1.5 1 0 0 1 1 1 1 Proliferating cell nuclear antigen, C-terminal domain DUF3840 PF12944.2 gi|433592840|ref|YP_007282336.1| - 0.068 13.0 0.0 0.15 11.9 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3840) DUF3900 PF13039.1 gi|433592841|ref|YP_007282337.1| - 2.6e-05 23.9 0.0 3.4e-05 23.5 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3900) DUF3898 PF13037.1 gi|433592841|ref|YP_007282337.1| - 0.022 14.6 0.1 0.04 13.7 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3898) DDE_Tnp_IS66 PF03050.9 gi|433592842|ref|YP_007282338.1| - 2.8e-52 177.5 0.0 2.8e-52 177.5 0.0 2.1 2 0 0 2 2 2 1 Transposase IS66 family SlyX PF04102.7 gi|433592842|ref|YP_007282338.1| - 8.4e-09 35.6 7.0 2e-08 34.4 4.8 1.7 1 0 0 1 1 1 1 SlyX zf-IS66 PF13005.2 gi|433592842|ref|YP_007282338.1| - 0.00066 19.5 5.8 0.00066 19.5 4.0 2.5 2 0 0 2 2 1 1 zinc-finger binding domain of transposase IS66 Atg14 PF10186.4 gi|433592842|ref|YP_007282338.1| - 0.0012 17.9 8.2 0.0019 17.1 5.7 1.3 1 0 0 1 1 1 1 UV radiation resistance protein and autophagy-related subunit 14 Fmp27_WPPW PF10359.4 gi|433592842|ref|YP_007282338.1| - 0.0026 16.2 7.0 0.0037 15.7 4.8 1.1 1 0 0 1 1 1 1 RNA pol II promoter Fmp27 protein domain MscS_porin PF12795.2 gi|433592842|ref|YP_007282338.1| - 0.0057 16.0 8.0 0.0091 15.3 5.6 1.3 1 0 0 1 1 1 1 Mechanosensitive ion channel porin domain DUF16 PF01519.11 gi|433592842|ref|YP_007282338.1| - 0.0057 16.8 5.1 0.013 15.7 3.6 1.5 1 0 0 1 1 1 1 Protein of unknown function DUF16 ATG16 PF08614.6 gi|433592842|ref|YP_007282338.1| - 0.013 15.3 10.5 0.025 14.4 7.2 1.4 1 0 0 1 1 1 0 Autophagy protein 16 (ATG16) Cortex-I_coil PF09304.5 gi|433592842|ref|YP_007282338.1| - 0.016 15.1 8.9 0.034 14.1 6.2 1.4 1 0 0 1 1 1 0 Cortexillin I, coiled coil IncA PF04156.9 gi|433592842|ref|YP_007282338.1| - 0.02 14.4 12.1 0.045 13.3 8.4 1.5 1 0 0 1 1 1 0 IncA protein HSBP1 PF06825.7 gi|433592842|ref|YP_007282338.1| - 0.022 14.3 6.1 0.49 10.0 1.7 2.5 2 0 0 2 2 2 0 Heat shock factor binding protein 1 DZR PF12773.2 gi|433592842|ref|YP_007282338.1| - 0.028 14.2 2.8 0.069 12.9 2.0 1.6 1 0 0 1 1 1 0 Double zinc ribbon AAA_13 PF13166.1 gi|433592842|ref|YP_007282338.1| - 0.039 12.4 7.5 0.053 11.9 5.2 1.1 1 0 0 1 1 1 0 AAA domain Cast PF10174.4 gi|433592842|ref|YP_007282338.1| - 0.045 11.7 10.2 0.063 11.3 7.0 1.1 1 0 0 1 1 1 0 RIM-binding protein of the cytomatrix active zone GAS PF13851.1 gi|433592842|ref|YP_007282338.1| - 0.066 12.3 9.5 0.11 11.6 6.6 1.3 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding DDE_Tnp_IS240 PF13610.1 gi|433592842|ref|YP_007282338.1| - 0.074 13.0 3.1 0.19 11.6 0.0 2.5 2 1 0 2 2 2 0 DDE domain Spc7 PF08317.6 gi|433592842|ref|YP_007282338.1| - 0.084 11.5 8.5 0.17 10.5 5.9 1.4 1 0 0 1 1 1 0 Spc7 kinetochore protein Mnd1 PF03962.10 gi|433592842|ref|YP_007282338.1| - 0.087 12.4 9.9 0.26 10.9 6.8 1.7 1 0 0 1 1 1 0 Mnd1 family DUF3552 PF12072.3 gi|433592842|ref|YP_007282338.1| - 0.089 11.9 15.5 0.15 11.2 10.7 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3552) TMF_DNA_bd PF12329.3 gi|433592842|ref|YP_007282338.1| - 0.11 12.3 12.3 0.25 11.1 8.5 1.6 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding TMCO5 PF14992.1 gi|433592842|ref|YP_007282338.1| - 0.14 11.3 8.7 0.23 10.5 6.0 1.3 1 0 0 1 1 1 0 TMCO5 family Fib_alpha PF08702.5 gi|433592842|ref|YP_007282338.1| - 0.14 12.2 5.0 0.31 11.1 3.5 1.5 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family FliD_C PF07195.7 gi|433592842|ref|YP_007282338.1| - 0.17 11.1 4.2 0.31 10.3 2.9 1.4 1 0 0 1 1 1 0 Flagellar hook-associated protein 2 C-terminus Flagellin_C PF00700.16 gi|433592842|ref|YP_007282338.1| - 0.24 11.5 1.8 0.48 10.6 1.3 1.4 1 0 0 1 1 1 0 Bacterial flagellin C-terminal helical region Allexi_40kDa PF05549.6 gi|433592842|ref|YP_007282338.1| - 0.27 10.5 2.8 0.46 9.7 1.9 1.3 1 0 0 1 1 1 0 Allexivirus 40kDa protein Fzo_mitofusin PF04799.8 gi|433592842|ref|YP_007282338.1| - 0.36 10.1 3.5 0.67 9.3 2.5 1.3 1 0 0 1 1 1 0 fzo-like conserved region DUF3584 PF12128.3 gi|433592842|ref|YP_007282338.1| - 0.42 7.8 8.1 0.62 7.3 5.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) DUF812 PF05667.6 gi|433592842|ref|YP_007282338.1| - 0.44 8.9 8.7 0.65 8.4 6.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF812) DASH_Spc34 PF08657.5 gi|433592842|ref|YP_007282338.1| - 0.49 10.0 14.2 2.1 7.9 6.7 2.4 1 1 1 2 2 2 0 DASH complex subunit Spc34 COG2 PF06148.6 gi|433592842|ref|YP_007282338.1| - 0.61 9.9 5.2 1.1 9.0 3.6 1.4 1 0 0 1 1 1 0 COG (conserved oligomeric Golgi) complex component, COG2 Med9 PF07544.8 gi|433592842|ref|YP_007282338.1| - 0.89 9.3 19.2 12 5.7 7.6 3.2 2 1 1 3 3 3 0 RNA polymerase II transcription mediator complex subunit 9 DUF536 PF04394.9 gi|433592842|ref|YP_007282338.1| - 0.93 9.2 15.4 1.6 8.4 10.7 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF536 MIF4G_like_2 PF09090.6 gi|433592842|ref|YP_007282338.1| - 1 8.5 5.5 0.96 8.6 2.9 1.6 2 0 0 2 2 1 0 MIF4G like DUF1465 PF07323.7 gi|433592842|ref|YP_007282338.1| - 1.1 8.8 7.1 2.1 7.8 1.7 2.9 3 0 0 3 3 2 0 Protein of unknown function (DUF1465) DUF1664 PF07889.7 gi|433592842|ref|YP_007282338.1| - 1.8 8.3 4.7 3.8 7.3 3.2 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) V_ATPase_I PF01496.14 gi|433592842|ref|YP_007282338.1| - 2.5 5.8 6.5 3.5 5.3 4.5 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family FemAB PF02388.11 gi|433592842|ref|YP_007282338.1| - 3 6.4 6.9 4.3 5.8 4.8 1.1 1 0 0 1 1 1 0 FemAB family TMPIT PF07851.8 gi|433592842|ref|YP_007282338.1| - 3.8 6.4 4.1 6 5.8 2.9 1.2 1 0 0 1 1 1 0 TMPIT-like protein BTV_NS2 PF04514.7 gi|433592842|ref|YP_007282338.1| - 4 6.2 9.8 6.3 5.5 6.8 1.2 1 0 0 1 1 1 0 Bluetongue virus non-structural protein NS2 DUF3450 PF11932.3 gi|433592842|ref|YP_007282338.1| - 4.6 6.4 12.1 0.89 8.7 5.6 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3450) DUF4337 PF14235.1 gi|433592842|ref|YP_007282338.1| - 5.5 6.8 6.2 9.8 5.9 4.3 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4337) DUF4446 PF14584.1 gi|433592842|ref|YP_007282338.1| - 9 6.1 6.0 19 5.0 4.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF4446) DUF502 PF04367.8 gi|433592845|ref|YP_007282341.1| - 2.3e-21 75.5 0.0 2.3e-21 75.5 0.0 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF502) S1FA PF04689.8 gi|433592845|ref|YP_007282341.1| - 0.26 11.1 3.5 10 6.0 0.6 2.3 2 0 0 2 2 2 0 DNA binding protein S1FA MCM PF00493.18 gi|433592846|ref|YP_007282342.1| - 8.6e-124 412.6 1.2 2e-101 339.1 0.5 2.4 2 0 0 2 2 2 2 MCM2/3/5 family LAGLIDADG_3 PF14528.1 gi|433592846|ref|YP_007282342.1| - 1.2e-24 86.3 0.4 5.4e-16 58.6 0.2 3.0 2 0 0 2 2 2 2 LAGLIDADG-like domain Intein_splicing PF14890.1 gi|433592846|ref|YP_007282342.1| - 3.6e-19 68.8 0.0 4.7e-09 35.5 0.1 4.0 2 1 1 3 3 3 2 Intein splicing domain MCM_N PF14551.1 gi|433592846|ref|YP_007282342.1| - 1.4e-15 57.8 0.3 1.4e-15 57.8 0.2 3.1 3 2 0 3 3 3 1 MCM N-terminal domain Mg_chelatase PF01078.16 gi|433592846|ref|YP_007282342.1| - 8.6e-08 31.5 0.0 1.3e-05 24.5 0.0 2.4 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI HTH_3 PF01381.17 gi|433592846|ref|YP_007282342.1| - 1.9e-07 30.8 0.0 5.2e-07 29.4 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.1 gi|433592846|ref|YP_007282342.1| - 4.6e-06 26.7 3.2 6.2e-06 26.3 0.2 2.7 2 0 0 2 2 2 1 Helix-turn-helix domain Hom_end PF05204.9 gi|433592846|ref|YP_007282342.1| - 1e-05 25.4 0.2 0.074 13.0 0.0 2.5 1 1 1 2 2 2 2 Homing endonuclease HTH_19 PF12844.2 gi|433592846|ref|YP_007282342.1| - 9.3e-05 22.4 0.0 0.00054 19.9 0.0 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain Hint PF01079.15 gi|433592846|ref|YP_007282342.1| - 0.00052 19.2 0.0 0.0089 15.2 0.0 2.2 2 0 0 2 2 2 1 Hint module AAA_5 PF07728.9 gi|433592846|ref|YP_007282342.1| - 0.0074 16.0 0.0 0.99 9.1 0.0 2.7 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) Sigma54_activat PF00158.21 gi|433592846|ref|YP_007282342.1| - 0.023 14.1 0.1 0.46 9.9 0.0 2.3 2 0 0 2 2 2 0 Sigma-54 interaction domain TFIIB PF00382.14 gi|433592847|ref|YP_007282343.1| - 1e-24 86.0 0.8 2.7e-14 52.7 0.2 2.4 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|433592847|ref|YP_007282343.1| - 7.6e-11 41.1 2.0 1.3e-10 40.3 1.4 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding Prok-RING_1 PF14446.1 gi|433592847|ref|YP_007282343.1| - 0.015 14.9 1.6 0.027 14.1 1.1 1.4 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 DZR PF12773.2 gi|433592847|ref|YP_007282343.1| - 0.021 14.6 0.5 0.043 13.6 0.3 1.5 1 0 0 1 1 1 0 Double zinc ribbon zinc-ribbons_6 PF07191.7 gi|433592847|ref|YP_007282343.1| - 0.031 14.0 0.3 0.054 13.2 0.2 1.3 1 0 0 1 1 1 0 zinc-ribbons OrfB_Zn_ribbon PF07282.6 gi|433592847|ref|YP_007282343.1| - 0.033 13.8 0.3 0.063 12.9 0.2 1.5 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Cyclin_C PF02984.14 gi|433592847|ref|YP_007282343.1| - 0.071 13.0 0.0 1.3 8.9 0.0 2.2 2 0 0 2 2 2 0 Cyclin, C-terminal domain zf-IS66 PF13005.2 gi|433592847|ref|YP_007282343.1| - 1.8 8.6 5.0 1.3 9.0 1.7 2.0 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 zf-NADH-PPase PF09297.6 gi|433592847|ref|YP_007282343.1| - 1.8 8.1 4.5 18 4.9 0.1 3.1 2 1 1 3 3 3 0 NADH pyrophosphatase zinc ribbon domain PALP PF00291.20 gi|433592849|ref|YP_007282345.1| - 5.8e-62 209.6 3.8 6.8e-62 209.4 2.6 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme C1_2 PF03107.11 gi|433592849|ref|YP_007282345.1| - 0.11 12.6 2.1 0.2 11.8 1.4 1.4 1 0 0 1 1 1 0 C1 domain TrmB PF01978.14 gi|433592850|ref|YP_007282346.1| - 1.6e-12 46.9 0.0 2.3e-12 46.4 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|433592850|ref|YP_007282346.1| - 2.7e-07 30.1 0.2 4.3e-07 29.4 0.1 1.3 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|433592850|ref|YP_007282346.1| - 5.5e-07 29.0 0.6 1.8e-06 27.4 0.1 2.0 2 0 0 2 2 2 1 IclR helix-turn-helix domain MarR PF01047.17 gi|433592850|ref|YP_007282346.1| - 1e-05 25.1 0.0 2e-05 24.2 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|433592850|ref|YP_007282346.1| - 1e-05 25.7 0.4 6.3e-05 23.2 0.1 1.9 1 1 1 2 2 2 1 Winged helix DNA-binding domain HTH_5 PF01022.15 gi|433592850|ref|YP_007282346.1| - 7.4e-05 22.3 0.0 0.00013 21.5 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family GntR PF00392.16 gi|433592850|ref|YP_007282346.1| - 0.00037 19.8 0.2 0.00075 18.8 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_Crp_2 PF13545.1 gi|433592850|ref|YP_007282346.1| - 0.00042 20.0 0.0 0.00065 19.4 0.0 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_24 PF13412.1 gi|433592850|ref|YP_007282346.1| - 0.0015 17.8 0.0 0.0027 17.0 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|433592850|ref|YP_007282346.1| - 0.0015 18.2 0.1 0.003 17.3 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|433592850|ref|YP_007282346.1| - 0.0032 17.0 0.1 0.0054 16.3 0.1 1.4 1 0 0 1 1 1 1 HTH domain HTH_38 PF13936.1 gi|433592850|ref|YP_007282346.1| - 0.0057 16.1 0.0 0.0092 15.5 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain Phage_rep_org_N PF09681.5 gi|433592850|ref|YP_007282346.1| - 0.012 15.1 0.0 0.025 14.1 0.0 1.5 2 0 0 2 2 2 0 N-terminal phage replisome organiser (Phage_rep_org_N) HTH_36 PF13730.1 gi|433592850|ref|YP_007282346.1| - 0.019 15.0 0.0 0.035 14.2 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain DUF742 PF05331.6 gi|433592850|ref|YP_007282346.1| - 0.022 14.3 0.0 0.027 14.0 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF742) HTH_23 PF13384.1 gi|433592850|ref|YP_007282346.1| - 0.025 14.2 0.1 0.046 13.3 0.1 1.5 1 0 0 1 1 1 0 Homeodomain-like domain z-alpha PF02295.12 gi|433592850|ref|YP_007282346.1| - 0.034 13.9 0.0 0.055 13.2 0.0 1.3 1 0 0 1 1 1 0 Adenosine deaminase z-alpha domain HTH_29 PF13551.1 gi|433592850|ref|YP_007282346.1| - 0.078 13.1 0.1 0.12 12.4 0.1 1.5 1 1 0 1 1 1 0 Winged helix-turn helix Fe_dep_repress PF01325.14 gi|433592850|ref|YP_007282346.1| - 0.078 12.9 0.0 0.27 11.1 0.0 1.7 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain Sulfolobus_pRN PF05584.6 gi|433592850|ref|YP_007282346.1| - 0.11 12.4 0.0 0.16 11.9 0.0 1.2 1 0 0 1 1 1 0 Sulfolobus plasmid regulatory protein Replic_Relax PF13814.1 gi|433592850|ref|YP_007282346.1| - 0.13 12.1 0.0 0.16 11.7 0.0 1.1 1 0 0 1 1 1 0 Replication-relaxation DDE_Tnp_IS66 PF03050.9 gi|433592851|ref|YP_007282347.1| - 1.6e-54 184.9 0.9 2.2e-54 184.5 0.6 1.2 1 0 0 1 1 1 1 Transposase IS66 family DDE_Tnp_IS240 PF13610.1 gi|433592851|ref|YP_007282347.1| - 0.0058 16.5 2.9 0.03 14.3 0.0 2.8 3 0 0 3 3 3 1 DDE domain DUF3166 PF11365.3 gi|433592851|ref|YP_007282347.1| - 0.012 16.0 4.7 0.032 14.6 0.2 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF3166) TBPIP PF07106.8 gi|433592851|ref|YP_007282347.1| - 0.18 11.3 5.5 2.5 7.6 0.4 2.2 2 0 0 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) zf-IS66 PF13005.2 gi|433592851|ref|YP_007282347.1| - 0.2 11.6 5.2 1.7 8.6 0.2 2.7 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 SlyX PF04102.7 gi|433592851|ref|YP_007282347.1| - 1.4 9.3 5.7 14 6.1 1.2 2.8 2 0 0 2 2 2 0 SlyX DUF2938 PF11158.3 gi|433592852|ref|YP_007282348.1| - 0.029 13.6 5.8 0.04 13.2 4.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2938) OTCace PF00185.19 gi|433592853|ref|YP_007282349.1| - 5.2e-50 169.3 0.0 8e-50 168.7 0.0 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain OTCace_N PF02729.16 gi|433592853|ref|YP_007282349.1| - 2.9e-49 166.3 0.0 4.1e-49 165.8 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain PALP PF00291.20 gi|433592853|ref|YP_007282349.1| - 0.11 11.7 0.0 0.15 11.2 0.0 1.4 1 0 0 1 1 1 0 Pyridoxal-phosphate dependent enzyme Peptidase_M20 PF01546.23 gi|433592854|ref|YP_007282350.1| - 3.3e-26 91.9 0.1 4.4e-26 91.5 0.1 1.2 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|433592854|ref|YP_007282350.1| - 6.3e-05 22.6 0.0 0.00011 21.9 0.0 1.4 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M28 PF04389.12 gi|433592854|ref|YP_007282350.1| - 0.0054 16.4 0.2 0.017 14.8 0.1 1.9 1 1 0 1 1 1 1 Peptidase family M28 Aminotran_3 PF00202.16 gi|433592855|ref|YP_007282351.1| - 5.9e-94 314.6 0.0 7.2e-94 314.4 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-III Beta_elim_lyase PF01212.16 gi|433592855|ref|YP_007282351.1| - 0.014 14.5 0.0 0.026 13.6 0.0 1.3 1 0 0 1 1 1 0 Beta-eliminating lyase AA_kinase PF00696.23 gi|433592856|ref|YP_007282352.1| - 4.7e-29 101.6 3.8 5.5e-29 101.4 2.6 1.1 1 0 0 1 1 1 1 Amino acid kinase family GCV_H PF01597.14 gi|433592856|ref|YP_007282352.1| - 0.13 11.9 1.4 0.35 10.5 0.1 2.1 2 0 0 2 2 2 0 Glycine cleavage H-protein Semialdhyde_dh PF01118.19 gi|433592857|ref|YP_007282353.1| - 1.9e-28 99.1 0.0 4.3e-28 98.0 0.0 1.6 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.13 gi|433592857|ref|YP_007282353.1| - 9.7e-08 32.0 0.0 1.5e-07 31.4 0.0 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain DapB_N PF01113.15 gi|433592857|ref|YP_007282353.1| - 0.035 14.0 0.1 0.085 12.7 0.0 1.7 1 1 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus RimK PF08443.6 gi|433592858|ref|YP_007282354.1| - 3.9e-41 140.6 0.0 5.6e-41 140.1 0.0 1.2 1 0 0 1 1 1 1 RimK-like ATP-grasp domain ATP-grasp_4 PF13535.1 gi|433592858|ref|YP_007282354.1| - 7.1e-20 71.5 0.1 1.2e-19 70.7 0.1 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_3 PF02655.9 gi|433592858|ref|YP_007282354.1| - 5.4e-11 42.6 0.0 7.7e-11 42.1 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|433592858|ref|YP_007282354.1| - 9e-10 37.7 0.0 1.4e-09 37.2 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon GSH-S_ATP PF02955.11 gi|433592858|ref|YP_007282354.1| - 7e-09 35.0 0.0 1.7e-08 33.8 0.0 1.6 2 0 0 2 2 2 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp PF02222.17 gi|433592858|ref|YP_007282354.1| - 5.3e-06 25.8 0.1 0.0001 21.6 0.0 2.6 2 1 0 2 2 2 1 ATP-grasp domain CPSase_L_D2 PF02786.12 gi|433592858|ref|YP_007282354.1| - 1.3e-05 24.6 0.0 3.9e-05 23.0 0.0 1.8 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp_5 PF13549.1 gi|433592858|ref|YP_007282354.1| - 3e-05 23.3 0.0 0.00042 19.5 0.0 2.4 1 1 1 2 2 2 1 ATP-grasp domain Dala_Dala_lig_C PF07478.8 gi|433592858|ref|YP_007282354.1| - 0.099 12.0 0.0 0.2 11.0 0.0 1.5 1 1 0 1 1 1 0 D-ala D-ala ligase C-terminus zinc_ribbon_2 PF13240.1 gi|433592859|ref|YP_007282355.1| - 0.00058 19.2 0.3 0.46 10.0 0.0 2.2 2 0 0 2 2 2 2 zinc-ribbon domain DNA_RNApol_7kD PF03604.8 gi|433592859|ref|YP_007282355.1| - 0.00098 18.5 1.8 0.0034 16.8 1.2 1.8 1 1 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit zf-ribbon_3 PF13248.1 gi|433592859|ref|YP_007282355.1| - 0.016 14.4 0.2 4.4 6.6 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DZR PF12773.2 gi|433592859|ref|YP_007282355.1| - 0.018 14.8 0.4 0.056 13.2 0.3 1.7 1 1 0 1 1 1 0 Double zinc ribbon Zn-ribbon_8 PF09723.5 gi|433592859|ref|YP_007282355.1| - 0.026 14.4 1.2 0.05 13.5 0.8 1.5 1 1 0 1 1 1 0 Zinc ribbon domain PhnA_Zn_Ribbon PF08274.7 gi|433592859|ref|YP_007282355.1| - 0.032 13.9 1.4 0.12 12.1 1.0 1.8 1 1 1 2 2 2 0 PhnA Zinc-Ribbon zf-HYPF PF07503.7 gi|433592859|ref|YP_007282355.1| - 0.034 13.5 0.0 6 6.3 0.0 2.1 2 0 0 2 2 2 0 HypF finger YhfH PF14149.1 gi|433592859|ref|YP_007282355.1| - 0.045 13.5 1.9 3.1 7.6 0.1 2.2 2 0 0 2 2 2 0 YhfH-like protein HypA PF01155.14 gi|433592859|ref|YP_007282355.1| - 0.048 13.3 0.4 0.054 13.1 0.3 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Prok-RING_1 PF14446.1 gi|433592859|ref|YP_007282355.1| - 0.052 13.2 4.8 0.11 12.2 3.3 1.5 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 TF_Zn_Ribbon PF08271.7 gi|433592859|ref|YP_007282355.1| - 0.071 12.4 3.0 0.099 11.9 2.1 1.4 1 0 0 1 1 1 0 TFIIB zinc-binding Desulfoferrod_N PF06397.7 gi|433592859|ref|YP_007282355.1| - 0.088 12.2 2.3 0.74 9.2 0.2 2.1 2 0 0 2 2 2 0 Desulfoferrodoxin, N-terminal domain DUF2387 PF09526.5 gi|433592859|ref|YP_007282355.1| - 0.093 12.6 3.9 2.7 7.9 0.3 2.1 1 1 1 2 2 2 0 Probable metal-binding protein (DUF2387) Nudix_N_2 PF14803.1 gi|433592859|ref|YP_007282355.1| - 0.11 12.1 2.5 6.7 6.4 0.1 2.2 2 0 0 2 2 2 0 Nudix N-terminal zinc_ribbon_5 PF13719.1 gi|433592859|ref|YP_007282355.1| - 0.13 11.8 0.4 0.43 10.1 0.3 1.7 1 1 1 2 2 2 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|433592859|ref|YP_007282355.1| - 0.14 11.8 0.4 0.19 11.4 0.3 1.2 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Lar_restr_allev PF14354.1 gi|433592859|ref|YP_007282355.1| - 0.17 12.1 2.9 1.9 8.8 2.0 2.0 1 1 0 1 1 1 0 Restriction alleviation protein Lar RNA_POL_M_15KD PF02150.11 gi|433592859|ref|YP_007282355.1| - 0.2 11.3 1.6 1.4 8.6 1.1 2.0 1 1 0 1 1 1 0 RNA polymerases M/15 Kd subunit DUF1610 PF07754.6 gi|433592859|ref|YP_007282355.1| - 1.6 8.9 4.8 1.6 8.9 0.4 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) Lyase_1 PF00206.15 gi|433592860|ref|YP_007282356.1| - 1.4e-55 188.6 0.4 4e-55 187.2 0.0 1.8 2 1 0 2 2 2 1 Lyase ASL_C2 PF14698.1 gi|433592860|ref|YP_007282356.1| - 9.5e-11 41.6 1.2 4.9e-10 39.3 0.8 2.4 1 0 0 1 1 1 1 Argininosuccinate lyase C-terminal Arginosuc_synth PF00764.14 gi|433592861|ref|YP_007282357.1| - 4.9e-143 476.8 0.0 5.8e-143 476.6 0.0 1.0 1 0 0 1 1 1 1 Arginosuccinate synthase Asn_synthase PF00733.16 gi|433592861|ref|YP_007282357.1| - 1.1e-06 28.3 0.2 7.4e-05 22.3 0.0 2.2 2 0 0 2 2 2 1 Asparagine synthase QueC PF06508.8 gi|433592861|ref|YP_007282357.1| - 0.00018 20.8 0.0 0.0003 20.1 0.0 1.3 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.11 gi|433592861|ref|YP_007282357.1| - 0.0029 16.2 0.0 0.0051 15.4 0.0 1.4 1 0 0 1 1 1 1 tRNA methyl transferase NAD_synthase PF02540.12 gi|433592861|ref|YP_007282357.1| - 0.0042 16.0 0.0 0.0066 15.3 0.0 1.2 1 0 0 1 1 1 1 NAD synthase DUF1551 PF07585.6 gi|433592862|ref|YP_007282358.1| - 0.015 14.2 0.4 0.021 13.7 0.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1551) Colicin PF01024.14 gi|433592863|ref|YP_007282359.1| - 0.22 11.1 3.6 0.22 11.0 2.5 1.0 1 0 0 1 1 1 0 Colicin pore forming domain DoxD PF04173.8 gi|433592863|ref|YP_007282359.1| - 0.44 10.2 5.2 0.5 10.0 3.6 1.2 1 0 0 1 1 1 0 TQO small subunit DoxD DUF417 PF04224.7 gi|433592863|ref|YP_007282359.1| - 5.3 6.3 7.6 5.9 6.2 5.3 1.1 1 0 0 1 1 1 0 Protein of unknown function, DUF417 DUF4191 PF13829.1 gi|433592863|ref|YP_007282359.1| - 5.8 5.9 6.2 6.2 5.8 4.3 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4191) 2_5_RNA_ligase2 PF13563.1 gi|433592864|ref|YP_007282360.1| - 8.3e-15 54.8 0.1 1e-14 54.4 0.1 1.1 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily LigT_PEase PF02834.11 gi|433592864|ref|YP_007282360.1| - 2.9e-08 33.5 0.2 0.0003 20.6 0.0 2.5 2 1 0 2 2 2 2 LigT like Phosphoesterase AKAP7_NLS PF10469.4 gi|433592864|ref|YP_007282360.1| - 9.9e-06 25.3 0.0 1.3e-05 25.0 0.0 1.1 1 0 0 1 1 1 1 AKAP7 2'5' RNA ligase-like domain Sulf_transp PF04143.9 gi|433592865|ref|YP_007282361.1| - 3.4e-19 68.5 22.7 1e-10 41.4 2.6 4.0 5 1 0 5 5 5 2 Sulphur transport DUF4161 PF13722.1 gi|433592865|ref|YP_007282361.1| - 4.1 7.7 8.4 0.17 12.1 0.6 2.5 3 0 0 3 3 3 0 C-terminal domain on CstA (DUF4161) TusA PF01206.12 gi|433592866|ref|YP_007282362.1| - 9.2e-12 44.3 0.0 1.3e-11 43.9 0.0 1.2 1 0 0 1 1 1 1 Sulfurtransferase TusA Rhodanese PF00581.15 gi|433592867|ref|YP_007282363.1| - 2.3e-15 56.9 0.0 2.6e-15 56.7 0.0 1.0 1 0 0 1 1 1 1 Rhodanese-like domain Helicase_C_2 PF13307.1 gi|433592868|ref|YP_007282364.1| - 1.1e-28 100.3 0.0 3.2e-28 98.7 0.0 1.8 1 0 0 1 1 1 1 Helicase C-terminal domain DEAD_2 PF06733.10 gi|433592868|ref|YP_007282364.1| - 3.1e-23 82.0 0.8 1.4e-22 79.9 0.6 1.9 1 1 0 1 1 1 1 DEAD_2 DEAD PF00270.24 gi|433592868|ref|YP_007282364.1| - 1.9e-08 33.9 0.0 2.4e-05 23.9 0.0 3.1 3 0 0 3 3 3 2 DEAD/DEAH box helicase ResIII PF04851.10 gi|433592868|ref|YP_007282364.1| - 5.5e-06 26.3 2.0 6.7e-05 22.7 1.4 2.2 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit KaiC PF06745.8 gi|433592868|ref|YP_007282364.1| - 0.0015 17.7 0.0 0.0026 16.9 0.0 1.4 1 0 0 1 1 1 1 KaiC AAA_34 PF13872.1 gi|433592868|ref|YP_007282364.1| - 0.0051 15.6 0.0 0.0087 14.8 0.0 1.2 1 0 0 1 1 1 1 P-loop containing NTP hydrolase pore-1 Zot PF05707.7 gi|433592868|ref|YP_007282364.1| - 0.0096 15.4 0.1 1.7 8.0 0.0 2.4 2 0 0 2 2 2 1 Zonular occludens toxin (Zot) PhoH PF02562.11 gi|433592868|ref|YP_007282364.1| - 0.016 14.4 0.0 0.058 12.6 0.0 1.8 2 0 0 2 2 2 0 PhoH-like protein AAA_19 PF13245.1 gi|433592868|ref|YP_007282364.1| - 0.055 13.2 0.0 0.18 11.5 0.0 1.9 1 0 0 1 1 1 0 Part of AAA domain TPR_MLP1_2 PF07926.7 gi|433592868|ref|YP_007282364.1| - 0.15 11.8 7.2 0.076 12.7 2.4 2.1 2 0 0 2 2 2 0 TPR/MLP1/MLP2-like protein Syntaxin-6_N PF09177.6 gi|433592868|ref|YP_007282364.1| - 3.4 8.1 6.6 2.1 8.8 0.9 2.9 3 0 0 3 3 3 0 Syntaxin 6, N-terminal Cation_efflux PF01545.16 gi|433592870|ref|YP_007282366.1| - 1.4e-40 139.1 0.2 1.6e-40 138.9 0.1 1.0 1 0 0 1 1 1 1 Cation efflux family DUF1469 PF07332.6 gi|433592870|ref|YP_007282366.1| - 0.43 10.3 6.7 0.34 10.6 1.0 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF1469) VIT1 PF01988.14 gi|433592870|ref|YP_007282366.1| - 5 6.5 10.9 0.06 12.8 2.0 1.9 3 0 0 3 3 3 0 VIT family Metallophos_2 PF12850.2 gi|433592871|ref|YP_007282367.1| - 1.1e-23 83.8 0.4 1.3e-23 83.6 0.3 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|433592871|ref|YP_007282367.1| - 4.9e-08 32.5 0.1 4.6e-05 22.9 0.1 2.6 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Usp PF00582.21 gi|433592871|ref|YP_007282367.1| - 0.059 13.5 0.2 0.09 12.9 0.1 1.2 1 0 0 1 1 1 0 Universal stress protein family Beta_elim_lyase PF01212.16 gi|433592873|ref|YP_007282369.1| - 6.5e-84 281.4 1.2 7.4e-84 281.3 0.8 1.0 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.12 gi|433592873|ref|YP_007282369.1| - 4.6e-06 25.9 0.1 4.5e-05 22.6 0.1 2.1 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.15 gi|433592873|ref|YP_007282369.1| - 0.0033 15.7 0.0 0.005 15.1 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Peptidase_M29 PF02073.10 gi|433592874|ref|YP_007282370.1| - 7e-112 374.0 1.5 7.9e-112 373.9 1.0 1.0 1 0 0 1 1 1 1 Thermophilic metalloprotease (M29) Usp PF00582.21 gi|433592875|ref|YP_007282371.1| - 2.9e-27 95.5 1.0 3.3e-27 95.4 0.7 1.0 1 0 0 1 1 1 1 Universal stress protein family Abhydrolase_2 PF02230.11 gi|433592876|ref|YP_007282372.1| - 9.5e-22 77.4 0.0 4.7e-21 75.2 0.0 1.8 1 1 0 1 1 1 1 Phospholipase/Carboxylesterase Abhydrolase_5 PF12695.2 gi|433592876|ref|YP_007282372.1| - 2.7e-15 56.4 0.1 3.3e-15 56.1 0.1 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_6 PF12697.2 gi|433592876|ref|YP_007282372.1| - 2.5e-13 50.4 2.9 6.4e-10 39.2 0.6 2.1 1 1 1 2 2 2 2 Alpha/beta hydrolase family DLH PF01738.13 gi|433592876|ref|YP_007282372.1| - 4.7e-09 35.8 0.0 6.3e-09 35.4 0.0 1.1 1 0 0 1 1 1 1 Dienelactone hydrolase family Abhydrolase_3 PF07859.8 gi|433592876|ref|YP_007282372.1| - 2.1e-05 24.1 0.7 0.016 14.7 0.1 2.3 1 1 1 2 2 2 2 alpha/beta hydrolase fold Abhydrolase_1 PF00561.15 gi|433592876|ref|YP_007282372.1| - 9.4e-05 22.0 0.0 0.00025 20.6 0.0 1.5 1 1 1 2 2 2 1 alpha/beta hydrolase fold Peptidase_S9 PF00326.16 gi|433592876|ref|YP_007282372.1| - 0.00035 19.8 0.3 0.55 9.4 0.0 2.5 3 0 0 3 3 3 2 Prolyl oligopeptidase family FSH1 PF03959.8 gi|433592876|ref|YP_007282372.1| - 0.072 12.5 0.0 0.1 12.0 0.0 1.2 1 0 0 1 1 1 0 Serine hydrolase (FSH1) PE-PPE PF08237.6 gi|433592876|ref|YP_007282372.1| - 0.095 12.1 0.0 0.3 10.4 0.0 1.7 1 1 1 2 2 2 0 PE-PPE domain Cutinase PF01083.17 gi|433592876|ref|YP_007282372.1| - 0.14 11.8 0.0 0.19 11.4 0.0 1.2 1 0 0 1 1 1 0 Cutinase Glyoxalase PF00903.20 gi|433592877|ref|YP_007282373.1| - 1.7e-10 40.9 0.1 2.6e-10 40.3 0.1 1.3 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.1 gi|433592877|ref|YP_007282373.1| - 4e-08 33.2 0.0 6.7e-08 32.5 0.0 1.4 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_2 PF12681.2 gi|433592877|ref|YP_007282373.1| - 1e-07 32.5 0.0 2e-07 31.5 0.0 1.5 1 0 0 1 1 1 1 Glyoxalase-like domain Pyr_redox_2 PF07992.9 gi|433592878|ref|YP_007282374.1| - 3.4e-18 66.2 1.9 1.6e-13 50.9 0.1 2.1 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|433592878|ref|YP_007282374.1| - 4.2e-16 58.8 0.3 3.3e-09 36.1 0.0 2.0 1 1 1 2 2 2 2 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|433592878|ref|YP_007282374.1| - 1.2e-09 37.1 0.1 3e-05 22.6 0.0 2.1 2 0 0 2 2 2 2 HI0933-like protein Pyr_redox_3 PF13738.1 gi|433592878|ref|YP_007282374.1| - 4.4e-09 36.6 0.5 0.0001 22.4 0.0 2.2 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|433592878|ref|YP_007282374.1| - 1.6e-07 30.7 1.7 6e-05 22.2 0.0 2.1 2 0 0 2 2 2 2 FAD binding domain NAD_binding_9 PF13454.1 gi|433592878|ref|YP_007282374.1| - 9.5e-07 28.7 0.5 0.00078 19.2 0.1 2.2 2 0 0 2 2 2 2 FAD-NAD(P)-binding FAD_binding_2 PF00890.19 gi|433592878|ref|YP_007282374.1| - 2.1e-06 26.8 2.8 4.7e-06 25.7 0.1 2.0 1 1 1 2 2 2 1 FAD binding domain GIDA PF01134.17 gi|433592878|ref|YP_007282374.1| - 4.7e-06 25.7 0.4 4.7e-06 25.7 0.2 2.6 1 1 1 2 2 2 1 Glucose inhibited division protein A NAD_binding_8 PF13450.1 gi|433592878|ref|YP_007282374.1| - 2.6e-05 24.1 0.0 7e-05 22.7 0.0 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.12 gi|433592878|ref|YP_007282374.1| - 3.6e-05 22.9 0.2 6.8e-05 22.0 0.0 1.7 2 0 0 2 2 2 1 Thi4 family FAD_oxidored PF12831.2 gi|433592878|ref|YP_007282374.1| - 0.00062 18.9 0.1 0.00062 18.9 0.1 1.6 2 0 0 2 2 2 1 FAD dependent oxidoreductase Pyr_redox PF00070.22 gi|433592878|ref|YP_007282374.1| - 0.0024 18.2 0.1 0.015 15.7 0.0 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.9 gi|433592878|ref|YP_007282374.1| - 0.0082 14.8 4.2 0.29 9.7 0.4 2.1 2 0 0 2 2 2 2 Tryptophan halogenase Lycopene_cycl PF05834.7 gi|433592878|ref|YP_007282374.1| - 0.0086 15.0 0.6 0.2 10.5 0.1 2.1 1 1 1 2 2 2 1 Lycopene cyclase protein Amino_oxidase PF01593.19 gi|433592878|ref|YP_007282374.1| - 0.019 14.0 0.1 0.036 13.1 0.0 1.5 2 0 0 2 2 2 0 Flavin containing amine oxidoreductase 3HCDH_N PF02737.13 gi|433592878|ref|YP_007282374.1| - 0.036 13.7 0.1 0.047 13.3 0.1 1.4 1 1 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_7 PF13241.1 gi|433592878|ref|YP_007282374.1| - 0.052 13.7 0.0 0.097 12.9 0.0 1.5 1 1 0 1 1 1 0 Putative NAD(P)-binding AlaDh_PNT_C PF01262.16 gi|433592878|ref|YP_007282374.1| - 0.055 13.0 0.4 0.13 11.7 0.0 1.8 2 1 1 3 3 3 0 Alanine dehydrogenase/PNT, C-terminal domain GCS2 PF04107.8 gi|433592879|ref|YP_007282375.1| - 1e-07 31.3 2.2 1.1e-06 28.0 1.5 2.1 1 1 0 1 1 1 1 Glutamate-cysteine ligase family 2(GCS2) Yip1 PF04893.12 gi|433592880|ref|YP_007282376.1| - 2.3e-13 49.9 22.1 2.8e-13 49.7 15.3 1.1 1 0 0 1 1 1 1 Yip1 domain DUF4006 PF13179.1 gi|433592880|ref|YP_007282376.1| - 1.3 8.6 3.4 3.6 7.2 2.3 1.8 1 0 0 1 1 1 0 Family of unknown function (DUF4006) AAA_18 PF13238.1 gi|433592882|ref|YP_007282378.1| - 2.7e-13 50.3 0.0 3.6e-13 49.9 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|433592882|ref|YP_007282378.1| - 4.2e-09 37.2 0.1 6.8e-09 36.5 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|433592882|ref|YP_007282378.1| - 5.2e-08 32.8 0.0 7.7e-08 32.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain ADK PF00406.17 gi|433592882|ref|YP_007282378.1| - 1.1e-05 25.3 0.0 1.6e-05 24.8 0.0 1.2 1 0 0 1 1 1 1 Adenylate kinase RNA_binding PF01877.12 gi|433592883|ref|YP_007282379.1| - 1.6e-23 82.9 0.4 3.1e-23 82.0 0.3 1.5 1 1 0 1 1 1 1 RNA binding DUF4398 PF14346.1 gi|433592884|ref|YP_007282380.1| - 0.015 15.3 16.7 0.57 10.2 2.2 4.4 2 2 0 3 3 3 0 Domain of unknown function (DUF4398) GTPase_Cys_C PF12631.2 gi|433592884|ref|YP_007282380.1| - 0.77 10.2 11.8 0.37 11.2 0.1 4.4 3 2 1 4 4 4 0 Catalytic cysteine-containing C-terminus of GTPase, MnmE TPR_19 PF14559.1 gi|433592884|ref|YP_007282380.1| - 3.6 7.9 8.2 54 4.2 0.3 4.3 3 1 1 4 4 4 0 Tetratricopeptide repeat SRP54 PF00448.17 gi|433592885|ref|YP_007282381.1| - 1.8e-64 216.7 0.1 3.3e-64 215.9 0.1 1.4 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP_SPB PF02978.14 gi|433592885|ref|YP_007282381.1| - 6.4e-30 103.4 5.6 6.4e-30 103.4 3.9 3.1 2 1 1 3 3 3 1 Signal peptide binding domain SRP54_N PF02881.14 gi|433592885|ref|YP_007282381.1| - 6.2e-15 55.0 0.4 6.2e-15 55.0 0.3 2.4 3 1 1 4 4 3 1 SRP54-type protein, helical bundle domain CbiA PF01656.18 gi|433592885|ref|YP_007282381.1| - 0.00034 20.0 0.5 0.0011 18.4 0.0 2.1 2 1 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_10 PF12846.2 gi|433592885|ref|YP_007282381.1| - 0.00087 18.8 0.1 0.0012 18.3 0.1 1.4 1 0 0 1 1 1 1 AAA-like domain cobW PF02492.14 gi|433592885|ref|YP_007282381.1| - 0.0014 18.0 0.3 0.0066 15.9 0.2 2.1 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain Zeta_toxin PF06414.7 gi|433592885|ref|YP_007282381.1| - 0.002 17.2 0.0 0.0057 15.7 0.0 1.8 1 0 0 1 1 1 1 Zeta toxin CARD PF00619.16 gi|433592885|ref|YP_007282381.1| - 0.0021 17.8 0.9 0.048 13.5 0.1 2.5 2 0 0 2 2 2 1 Caspase recruitment domain AAA_25 PF13481.1 gi|433592885|ref|YP_007282381.1| - 0.0026 17.1 2.1 0.0037 16.6 0.3 2.2 2 1 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|433592885|ref|YP_007282381.1| - 0.0042 17.2 0.2 0.039 14.0 0.0 2.6 3 0 0 3 3 3 1 AAA domain MobB PF03205.9 gi|433592885|ref|YP_007282381.1| - 0.0074 16.0 0.0 0.024 14.3 0.0 1.9 2 0 0 2 2 1 1 Molybdopterin guanine dinucleotide synthesis protein B SMC_N PF02463.14 gi|433592885|ref|YP_007282381.1| - 0.014 14.6 0.0 0.025 13.8 0.0 1.4 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain APS_kinase PF01583.15 gi|433592885|ref|YP_007282381.1| - 0.025 14.2 0.0 0.062 12.9 0.0 1.7 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_23 PF13476.1 gi|433592885|ref|YP_007282381.1| - 0.028 14.7 0.3 0.078 13.3 0.0 2.0 2 1 0 2 2 1 0 AAA domain DUF2202 PF09968.4 gi|433592885|ref|YP_007282381.1| - 0.03 14.0 0.5 0.12 11.9 0.0 2.1 2 0 0 2 2 2 0 Uncharacterized protein domain (DUF2202) AAA_33 PF13671.1 gi|433592885|ref|YP_007282381.1| - 0.036 13.9 0.0 0.084 12.7 0.0 1.7 1 0 0 1 1 1 0 AAA domain KTI12 PF08433.5 gi|433592885|ref|YP_007282381.1| - 0.065 12.4 0.0 0.15 11.2 0.0 1.6 1 0 0 1 1 1 0 Chromatin associated protein KTI12 ArsA_ATPase PF02374.10 gi|433592885|ref|YP_007282381.1| - 0.093 11.7 0.0 0.093 11.7 0.0 2.8 2 1 1 3 3 3 0 Anion-transporting ATPase HTH_Tnp_1 PF01527.15 gi|433592885|ref|YP_007282381.1| - 0.095 12.6 0.2 32 4.5 0.0 3.3 3 0 0 3 3 3 0 Transposase Cas_Csy2 PF09614.5 gi|433592885|ref|YP_007282381.1| - 0.19 10.8 1.6 0.33 10.1 0.5 1.7 2 0 0 2 2 2 0 CRISPR-associated protein (Cas_Csy2) ATP-cone PF03477.11 gi|433592885|ref|YP_007282381.1| - 0.25 11.7 2.2 29 5.1 0.0 3.9 4 0 0 4 4 4 0 ATP cone domain DUF4618 PF15397.1 gi|433592885|ref|YP_007282381.1| - 3.9 6.7 9.4 0.084 12.2 0.3 2.5 3 0 0 3 3 3 0 Domain of unknown function (DUF4618) VCX_VCY PF15231.1 gi|433592886|ref|YP_007282382.1| - 0.004 17.5 0.2 0.0053 17.1 0.1 1.2 1 0 0 1 1 1 1 Variable charge X/Y family HTH_20 PF12840.2 gi|433592887|ref|YP_007282383.1| - 4.7e-05 23.0 0.4 0.00033 20.3 0.0 2.4 3 0 0 3 3 3 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|433592887|ref|YP_007282383.1| - 0.0067 15.7 0.0 0.026 13.8 0.0 2.0 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|433592887|ref|YP_007282383.1| - 0.014 15.0 0.2 1.4 8.6 0.0 3.1 3 0 0 3 3 3 0 MarR family LexA_DNA_bind PF01726.11 gi|433592887|ref|YP_007282383.1| - 0.021 14.3 0.0 0.054 13.0 0.0 1.7 1 0 0 1 1 1 0 LexA DNA binding domain TrmB PF01978.14 gi|433592887|ref|YP_007282383.1| - 0.038 13.6 0.1 0.2 11.4 0.0 2.1 3 0 0 3 3 3 0 Sugar-specific transcriptional regulator TrmB MAP7 PF05672.6 gi|433592887|ref|YP_007282383.1| - 0.053 12.9 0.3 0.053 12.9 0.2 1.9 2 0 0 2 2 2 0 MAP7 (E-MAP-115) family HTH_27 PF13463.1 gi|433592887|ref|YP_007282383.1| - 0.087 13.1 0.0 0.4 11.0 0.0 2.1 2 0 0 2 2 2 0 Winged helix DNA-binding domain Rrf2 PF02082.15 gi|433592887|ref|YP_007282383.1| - 0.09 12.8 0.0 0.27 11.3 0.0 1.7 2 0 0 2 2 2 0 Transcriptional regulator Sigma70_r4_2 PF08281.7 gi|433592887|ref|YP_007282383.1| - 0.093 12.2 0.0 0.78 9.2 0.0 2.3 2 0 0 2 2 2 0 Sigma-70, region 4 Radical_SAM PF04055.16 gi|433592887|ref|YP_007282383.1| - 0.25 11.4 0.9 6 7.0 0.2 2.6 1 1 1 2 2 2 0 Radical SAM superfamily UPF0150 PF03681.10 gi|433592888|ref|YP_007282384.1| - 0.00031 20.3 0.1 0.00042 19.8 0.0 1.4 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0150) Pyr_redox_2 PF07992.9 gi|433592889|ref|YP_007282385.1| - 4.1e-30 105.1 2.1 6.7e-30 104.4 1.5 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|433592889|ref|YP_007282385.1| - 2.8e-24 85.2 0.1 5.2e-24 84.4 0.0 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.22 gi|433592889|ref|YP_007282385.1| - 5.7e-15 55.4 1.5 9.9e-13 48.3 0.0 2.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase K_oxygenase PF13434.1 gi|433592889|ref|YP_007282385.1| - 0.00028 19.9 0.0 0.0031 16.4 0.0 2.3 1 1 1 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) GIDA PF01134.17 gi|433592889|ref|YP_007282385.1| - 0.0061 15.4 4.0 0.01 14.7 1.1 2.3 3 0 0 3 3 3 1 Glucose inhibited division protein A FAD_oxidored PF12831.2 gi|433592889|ref|YP_007282385.1| - 0.018 14.1 3.5 0.027 13.5 2.4 1.3 1 0 0 1 1 1 0 FAD dependent oxidoreductase MDMPI_C PF07398.6 gi|433592889|ref|YP_007282385.1| - 0.037 14.5 1.3 0.037 14.5 0.9 3.6 3 0 0 3 3 3 0 MDMPI C-terminal domain DAO PF01266.19 gi|433592889|ref|YP_007282385.1| - 0.089 11.6 11.2 0.46 9.3 2.1 2.6 2 0 0 2 2 2 0 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|433592889|ref|YP_007282385.1| - 0.17 10.6 8.9 1.5 7.6 1.8 3.2 3 1 1 4 4 4 0 FAD binding domain 3HCDH_N PF02737.13 gi|433592889|ref|YP_007282385.1| - 0.18 11.4 2.9 2 8.0 0.0 2.7 3 0 0 3 3 3 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HTH_10 PF04967.7 gi|433592890|ref|YP_007282386.1| - 2.7e-14 52.4 0.2 5.3e-14 51.5 0.1 1.5 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4_2 PF08281.7 gi|433592890|ref|YP_007282386.1| - 4.4e-05 22.8 0.7 0.0087 15.5 0.1 3.3 2 1 0 2 2 2 1 Sigma-70, region 4 Sigma70_r4 PF04545.11 gi|433592890|ref|YP_007282386.1| - 0.00021 20.5 0.4 0.00051 19.2 0.1 1.8 2 0 0 2 2 2 1 Sigma-70, region 4 MarR_2 PF12802.2 gi|433592890|ref|YP_007282386.1| - 0.0045 16.6 0.1 0.012 15.2 0.0 1.7 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|433592890|ref|YP_007282386.1| - 0.11 11.8 0.8 0.29 10.5 0.1 2.0 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding DDE_Tnp_1 PF01609.16 gi|433592891|ref|YP_007282387.1| - 5.6e-20 71.7 0.0 7.7e-20 71.3 0.0 1.1 1 0 0 1 1 1 1 Transposase DDE domain Rhodanese PF00581.15 gi|433592893|ref|YP_007282389.1| - 1.4e-40 138.1 0.0 4.2e-20 72.1 0.0 2.0 2 0 0 2 2 2 2 Rhodanese-like domain Rhodanese PF00581.15 gi|433592894|ref|YP_007282390.1| - 6.5e-38 129.5 0.4 2.3e-20 73.0 0.0 2.1 2 0 0 2 2 2 2 Rhodanese-like domain DUF4328 PF14219.1 gi|433592895|ref|YP_007282391.1| - 0.026 13.8 1.4 0.032 13.5 0.3 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4328) Rubrerythrin PF02915.12 gi|433592896|ref|YP_007282392.1| - 2.4e-05 24.6 0.2 0.00039 20.7 0.2 2.1 2 0 0 2 2 2 1 Rubrerythrin Stimulus_sens_1 PF13756.1 gi|433592896|ref|YP_007282392.1| - 0.014 15.7 1.4 0.51 10.7 0.3 2.3 2 0 0 2 2 2 0 Stimulus-sensing domain DUF892 PF05974.7 gi|433592896|ref|YP_007282392.1| - 0.058 13.2 0.7 0.11 12.2 0.5 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF892) HisKA PF00512.20 gi|433592896|ref|YP_007282392.1| - 0.09 12.7 1.8 1.6 8.7 0.5 2.9 1 1 1 2 2 2 0 His Kinase A (phospho-acceptor) domain Gluconate_2-dh3 PF13618.1 gi|433592896|ref|YP_007282392.1| - 4.2 7.5 8.4 1.6 8.8 3.2 2.0 1 1 1 2 2 2 0 Gluconate 2-dehydrogenase subunit 3 PAG PF15347.1 gi|433592897|ref|YP_007282393.1| - 0.0036 16.4 0.5 0.004 16.3 0.3 1.0 1 0 0 1 1 1 1 Phosphoprotein associated with glycosphingolipid-enriched DUF2884 PF11101.3 gi|433592897|ref|YP_007282393.1| - 0.033 13.5 1.0 0.037 13.3 0.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2884) HK PF02110.10 gi|433592898|ref|YP_007282394.1| - 2.3e-69 233.2 2.6 2.7e-69 233.0 1.8 1.0 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family Phos_pyr_kin PF08543.7 gi|433592898|ref|YP_007282394.1| - 5.7e-05 22.4 0.3 8.9e-05 21.7 0.2 1.3 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase Carb_kinase PF01256.12 gi|433592898|ref|YP_007282394.1| - 0.00057 19.2 3.5 0.0012 18.1 2.5 1.5 1 1 0 1 1 1 1 Carbohydrate kinase TMP-TENI PF02581.12 gi|433592899|ref|YP_007282395.1| - 5e-61 204.9 2.4 6e-61 204.7 1.7 1.1 1 0 0 1 1 1 1 Thiamine monophosphate synthase/TENI ThiG PF05690.9 gi|433592899|ref|YP_007282395.1| - 0.0009 18.3 5.5 0.0018 17.4 3.8 1.4 1 0 0 1 1 1 1 Thiazole biosynthesis protein ThiG NMO PF03060.10 gi|433592899|ref|YP_007282395.1| - 0.0017 17.5 9.4 0.0034 16.5 6.5 1.5 1 1 0 1 1 1 1 Nitronate monooxygenase DHO_dh PF01180.16 gi|433592899|ref|YP_007282395.1| - 0.015 14.2 1.6 0.02 13.8 1.1 1.2 1 0 0 1 1 1 0 Dihydroorotate dehydrogenase DUF561 PF04481.7 gi|433592899|ref|YP_007282395.1| - 0.11 11.4 0.9 0.22 10.4 0.6 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF561) Acetyltransf_4 PF13420.1 gi|433592900|ref|YP_007282396.1| - 2.7e-28 98.8 0.0 3.3e-28 98.6 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|433592900|ref|YP_007282396.1| - 3.1e-11 43.1 0.1 4.7e-11 42.5 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|433592900|ref|YP_007282396.1| - 1.2e-10 41.5 0.1 4e-10 39.8 0.0 1.7 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|433592900|ref|YP_007282396.1| - 1.4e-07 31.5 0.0 2e-07 31.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|433592900|ref|YP_007282396.1| - 9.5e-06 25.8 0.0 1.4e-05 25.3 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|433592900|ref|YP_007282396.1| - 2.7e-05 24.0 0.0 3.8e-05 23.5 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|433592900|ref|YP_007282396.1| - 0.0055 16.4 0.0 0.011 15.4 0.0 1.5 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.1 gi|433592900|ref|YP_007282396.1| - 0.029 14.2 0.0 0.061 13.1 0.0 1.7 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|433592900|ref|YP_007282396.1| - 0.15 11.9 0.0 0.27 11.1 0.0 1.4 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase Mem_trans PF03547.13 gi|433592901|ref|YP_007282397.1| - 2.6e-26 91.8 18.1 8.6e-14 50.6 5.9 2.1 1 1 0 2 2 2 2 Membrane transport protein DUF204 PF02659.10 gi|433592901|ref|YP_007282397.1| - 0.15 12.2 0.3 0.15 12.2 0.2 3.5 3 1 0 3 3 3 0 Domain of unknown function DUF RseC_MucC PF04246.7 gi|433592901|ref|YP_007282397.1| - 7.9 6.0 13.9 0.74 9.3 0.4 3.5 2 1 1 3 3 3 0 Positive regulator of sigma(E), RseC/MucC FrhB_FdhB_C PF04432.8 gi|433592902|ref|YP_007282398.1| - 2.2e-30 105.1 0.1 2.2e-30 105.1 0.1 2.0 2 1 0 2 2 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.8 gi|433592902|ref|YP_007282398.1| - 3e-20 71.8 0.2 6e-20 70.9 0.1 1.5 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4_21 PF14697.1 gi|433592902|ref|YP_007282398.1| - 7.4e-09 35.3 6.2 7.4e-09 35.3 4.3 1.9 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|433592902|ref|YP_007282398.1| - 1.6e-08 33.8 19.3 4.9e-07 29.0 2.9 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|433592902|ref|YP_007282398.1| - 2.2e-08 33.7 10.6 2.2e-08 33.7 7.4 2.5 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|433592902|ref|YP_007282398.1| - 2e-07 31.1 9.1 2e-07 31.1 6.3 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|433592902|ref|YP_007282398.1| - 2.1e-07 31.1 22.3 4.7e-06 26.8 7.8 2.9 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|433592902|ref|YP_007282398.1| - 2.9e-06 27.9 8.8 0.0097 16.6 0.8 3.8 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.2 gi|433592902|ref|YP_007282398.1| - 3.4e-06 26.6 19.6 4.7e-06 26.2 2.9 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|433592902|ref|YP_007282398.1| - 6e-06 26.5 5.2 0.0081 16.4 0.1 3.0 3 0 0 3 3 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|433592902|ref|YP_007282398.1| - 1.3e-05 24.8 3.4 1.3e-05 24.8 2.4 3.1 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_18 PF13746.1 gi|433592902|ref|YP_007282398.1| - 2e-05 24.8 9.8 0.0059 17.0 0.1 3.1 3 0 0 3 3 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|433592902|ref|YP_007282398.1| - 0.00022 21.2 20.4 0.0065 16.7 2.9 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|433592902|ref|YP_007282398.1| - 0.009 16.5 2.1 0.009 16.5 1.5 4.2 4 1 1 5 5 4 1 4Fe-4S single cluster domain Fer4_8 PF13183.1 gi|433592902|ref|YP_007282398.1| - 0.019 14.9 2.8 0.019 14.9 1.9 2.9 3 1 2 5 5 3 0 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|433592902|ref|YP_007282398.1| - 0.82 10.0 21.4 0.15 12.4 3.1 4.1 4 0 0 4 4 4 0 4Fe-4S single cluster domain NIR_SIR PF01077.17 gi|433592903|ref|YP_007282399.1| - 6e-48 162.1 0.0 2.1e-35 121.3 0.0 2.4 2 0 0 2 2 2 2 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.12 gi|433592903|ref|YP_007282399.1| - 7.5e-29 99.1 0.0 1.1e-13 50.5 0.0 2.8 2 1 0 2 2 2 2 Nitrite/Sulfite reductase ferredoxin-like half domain DGC PF08859.6 gi|433592903|ref|YP_007282399.1| - 0.018 14.8 0.1 0.27 11.1 0.0 2.4 2 0 0 2 2 2 0 DGC domain SRP54 PF00448.17 gi|433592905|ref|YP_007282401.1| - 4.4e-68 228.6 0.2 6.3e-68 228.0 0.1 1.2 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP54_N PF02881.14 gi|433592905|ref|YP_007282401.1| - 1.3e-12 47.5 0.2 4.8e-12 45.8 0.1 1.9 1 0 0 1 1 1 1 SRP54-type protein, helical bundle domain CbiA PF01656.18 gi|433592905|ref|YP_007282401.1| - 5.3e-05 22.7 1.1 0.00016 21.1 0.4 2.0 2 1 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain APS_kinase PF01583.15 gi|433592905|ref|YP_007282401.1| - 0.00013 21.6 0.0 0.00023 20.8 0.0 1.4 1 0 0 1 1 1 1 Adenylylsulphate kinase AAA_28 PF13521.1 gi|433592905|ref|YP_007282401.1| - 0.0009 19.2 0.2 0.0036 17.2 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|433592905|ref|YP_007282401.1| - 0.0015 18.7 0.0 0.0031 17.6 0.0 1.5 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.7 gi|433592905|ref|YP_007282401.1| - 0.0029 16.7 0.1 0.0056 15.7 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin Thymidylate_kin PF02223.12 gi|433592905|ref|YP_007282401.1| - 0.0068 15.7 0.0 0.048 13.0 0.0 2.2 2 0 0 2 2 2 1 Thymidylate kinase AAA_16 PF13191.1 gi|433592905|ref|YP_007282401.1| - 0.0093 15.9 0.0 0.0093 15.9 0.0 2.3 3 0 0 3 3 3 1 AAA ATPase domain KTI12 PF08433.5 gi|433592905|ref|YP_007282401.1| - 0.012 14.8 0.0 0.019 14.1 0.0 1.2 1 0 0 1 1 1 0 Chromatin associated protein KTI12 cobW PF02492.14 gi|433592905|ref|YP_007282401.1| - 0.013 15.0 0.1 0.029 13.8 0.1 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain ATP_bind_1 PF03029.12 gi|433592905|ref|YP_007282401.1| - 0.029 13.9 0.3 0.11 12.0 0.0 1.9 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein 6PF2K PF01591.13 gi|433592905|ref|YP_007282401.1| - 0.03 13.3 0.0 0.053 12.5 0.0 1.3 1 0 0 1 1 1 0 6-phosphofructo-2-kinase MobB PF03205.9 gi|433592905|ref|YP_007282401.1| - 0.034 13.8 0.1 0.081 12.6 0.1 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B NTPase_1 PF03266.10 gi|433592905|ref|YP_007282401.1| - 0.047 13.3 0.2 0.096 12.3 0.0 1.5 2 0 0 2 2 1 0 NTPase AAA_33 PF13671.1 gi|433592905|ref|YP_007282401.1| - 0.12 12.3 0.0 0.26 11.1 0.0 1.7 2 0 0 2 2 1 0 AAA domain AAA_17 PF13207.1 gi|433592905|ref|YP_007282401.1| - 0.39 11.5 0.0 0.39 11.5 0.0 2.9 3 2 0 3 3 3 0 AAA domain Prefoldin PF02996.12 gi|433592906|ref|YP_007282402.1| - 1.1e-26 92.8 8.0 1.1e-26 92.8 5.5 1.8 1 1 1 2 2 2 1 Prefoldin subunit Prefoldin_2 PF01920.15 gi|433592906|ref|YP_007282402.1| - 2.4e-06 27.2 21.7 0.0024 17.6 5.5 2.6 2 1 0 2 2 2 2 Prefoldin subunit IncA PF04156.9 gi|433592906|ref|YP_007282402.1| - 7.4e-06 25.6 20.9 0.0016 18.1 3.0 2.1 2 0 0 2 2 2 2 IncA protein SlyX PF04102.7 gi|433592906|ref|YP_007282402.1| - 7.5e-06 26.2 26.9 5.6e-05 23.4 7.5 2.8 3 0 0 3 3 2 1 SlyX NPV_P10 PF05531.7 gi|433592906|ref|YP_007282402.1| - 4.6e-05 23.5 17.3 0.014 15.6 3.3 2.6 2 1 0 2 2 2 2 Nucleopolyhedrovirus P10 protein DUF972 PF06156.8 gi|433592906|ref|YP_007282402.1| - 6.8e-05 23.1 11.2 0.046 14.0 2.6 2.2 2 0 0 2 2 2 2 Protein of unknown function (DUF972) Spc24 PF08286.6 gi|433592906|ref|YP_007282402.1| - 0.00013 21.6 17.3 0.017 14.8 1.2 2.1 2 0 0 2 2 2 2 Spc24 subunit of Ndc80 Lzipper-MIP1 PF14389.1 gi|433592906|ref|YP_007282402.1| - 0.00017 21.6 5.7 0.00017 21.6 3.9 2.5 2 1 0 2 2 1 1 Leucine-zipper of ternary complex factor MIP1 Laminin_II PF06009.7 gi|433592906|ref|YP_007282402.1| - 0.00026 20.7 6.1 0.05 13.3 0.2 2.2 2 0 0 2 2 2 2 Laminin Domain II Spc7 PF08317.6 gi|433592906|ref|YP_007282402.1| - 0.00039 19.1 13.5 0.038 12.6 1.6 2.1 2 0 0 2 2 2 2 Spc7 kinetochore protein DivIC PF04977.10 gi|433592906|ref|YP_007282402.1| - 0.00051 19.4 22.7 0.061 12.8 5.0 2.6 3 0 0 3 3 2 2 Septum formation initiator DUF4200 PF13863.1 gi|433592906|ref|YP_007282402.1| - 0.00058 19.8 17.8 0.011 15.6 2.6 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF4200) BicD PF09730.4 gi|433592906|ref|YP_007282402.1| - 0.00059 18.3 12.0 0.00071 18.0 8.3 1.1 1 0 0 1 1 1 1 Microtubule-associated protein Bicaudal-D CENP-F_leu_zip PF10473.4 gi|433592906|ref|YP_007282402.1| - 0.0006 19.6 17.8 0.0086 15.9 2.9 2.2 2 0 0 2 2 2 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 GAS PF13851.1 gi|433592906|ref|YP_007282402.1| - 0.00086 18.5 12.0 0.043 13.0 1.8 2.1 2 0 0 2 2 2 2 Growth-arrest specific micro-tubule binding DUF4618 PF15397.1 gi|433592906|ref|YP_007282402.1| - 0.00099 18.5 13.2 0.045 13.0 1.5 2.1 2 0 0 2 2 2 2 Domain of unknown function (DUF4618) DUF4337 PF14235.1 gi|433592906|ref|YP_007282402.1| - 0.0012 18.7 3.7 0.0012 18.7 2.6 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF4337) DUF3450 PF11932.3 gi|433592906|ref|YP_007282402.1| - 0.0013 18.0 22.8 0.01 15.0 5.7 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF3450) Ax_dynein_light PF10211.4 gi|433592906|ref|YP_007282402.1| - 0.0014 18.4 16.9 0.015 15.1 4.3 2.1 2 0 0 2 2 2 1 Axonemal dynein light chain Tropomyosin_1 PF12718.2 gi|433592906|ref|YP_007282402.1| - 0.0015 18.4 22.7 0.015 15.1 5.9 2.1 2 0 0 2 2 2 1 Tropomyosin like DUF2730 PF10805.3 gi|433592906|ref|YP_007282402.1| - 0.0015 18.2 7.2 0.096 12.4 0.4 2.3 2 0 0 2 2 2 1 Protein of unknown function (DUF2730) AAA_13 PF13166.1 gi|433592906|ref|YP_007282402.1| - 0.0015 17.1 15.1 0.015 13.8 2.6 2.0 2 0 0 2 2 2 2 AAA domain APG6 PF04111.7 gi|433592906|ref|YP_007282402.1| - 0.0015 17.6 20.5 0.011 14.8 4.3 2.0 2 0 0 2 2 2 2 Autophagy protein Apg6 Mod_r PF07200.8 gi|433592906|ref|YP_007282402.1| - 0.0016 18.3 11.7 0.0051 16.7 1.1 2.1 2 0 0 2 2 2 1 Modifier of rudimentary (Mod(r)) protein DUF4140 PF13600.1 gi|433592906|ref|YP_007282402.1| - 0.0017 18.7 15.3 0.051 14.0 1.4 2.3 2 0 0 2 2 2 1 N-terminal domain of unknown function (DUF4140) FlxA PF14282.1 gi|433592906|ref|YP_007282402.1| - 0.0019 18.1 28.9 0.0029 17.5 6.9 2.5 2 0 0 2 2 2 1 FlxA-like protein Hemerythrin PF01814.18 gi|433592906|ref|YP_007282402.1| - 0.0024 18.0 4.3 0.63 10.2 0.2 2.2 2 0 0 2 2 2 1 Hemerythrin HHE cation binding domain FliD_C PF07195.7 gi|433592906|ref|YP_007282402.1| - 0.0025 17.1 2.2 0.0025 17.1 1.5 2.2 2 0 0 2 2 2 1 Flagellar hook-associated protein 2 C-terminus Phage_GP20 PF06810.6 gi|433592906|ref|YP_007282402.1| - 0.0032 16.9 19.6 0.018 14.4 5.5 2.2 2 0 0 2 2 2 1 Phage minor structural protein GP20 ADIP PF11559.3 gi|433592906|ref|YP_007282402.1| - 0.0034 17.3 14.6 0.0046 16.8 2.2 2.1 2 0 0 2 2 2 1 Afadin- and alpha -actinin-Binding TBPIP PF07106.8 gi|433592906|ref|YP_007282402.1| - 0.0034 16.9 21.3 0.079 12.5 3.3 2.1 1 1 1 2 2 2 2 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Dor1 PF04124.7 gi|433592906|ref|YP_007282402.1| - 0.004 15.6 7.4 0.069 11.5 0.7 2.0 2 0 0 2 2 2 1 Dor1-like family DUF1664 PF07889.7 gi|433592906|ref|YP_007282402.1| - 0.0041 16.9 9.7 0.18 11.6 0.9 2.2 2 0 0 2 2 2 2 Protein of unknown function (DUF1664) MscS_porin PF12795.2 gi|433592906|ref|YP_007282402.1| - 0.0047 16.2 23.7 0.037 13.3 6.3 2.1 2 0 0 2 2 2 1 Mechanosensitive ion channel porin domain Transposase_22 PF02994.9 gi|433592906|ref|YP_007282402.1| - 0.0061 15.0 6.5 0.041 12.3 0.4 2.0 2 0 0 2 2 2 1 L1 transposable element EzrA PF06160.7 gi|433592906|ref|YP_007282402.1| - 0.0066 14.6 16.6 0.1 10.7 3.5 2.1 2 0 0 2 2 2 2 Septation ring formation regulator, EzrA PspA_IM30 PF04012.7 gi|433592906|ref|YP_007282402.1| - 0.0073 15.6 18.7 0.023 14.0 4.1 2.1 2 0 0 2 2 2 1 PspA/IM30 family DUF904 PF06005.7 gi|433592906|ref|YP_007282402.1| - 0.0075 16.5 25.2 0.013 15.7 5.6 2.5 2 1 0 2 2 2 1 Protein of unknown function (DUF904) Baculo_PEP_C PF04513.7 gi|433592906|ref|YP_007282402.1| - 0.0091 15.8 15.8 0.083 12.7 2.0 2.3 1 1 1 2 2 2 1 Baculovirus polyhedron envelope protein, PEP, C terminus Mnd1 PF03962.10 gi|433592906|ref|YP_007282402.1| - 0.0093 15.6 17.9 0.15 11.6 3.2 2.1 2 0 0 2 2 2 2 Mnd1 family DUF3373 PF11853.3 gi|433592906|ref|YP_007282402.1| - 0.0096 14.5 17.1 0.025 13.1 0.7 2.2 1 1 1 2 2 2 1 Protein of unknown function (DUF3373) Lebercilin PF15619.1 gi|433592906|ref|YP_007282402.1| - 0.0096 15.3 11.9 0.048 13.0 0.4 2.1 2 0 0 2 2 2 1 Ciliary protein causing Leber congenital amaurosis disease Myosin_tail_1 PF01576.14 gi|433592906|ref|YP_007282402.1| - 0.0097 13.6 17.5 0.016 12.9 4.0 2.0 2 0 0 2 2 2 1 Myosin tail BLOC1_2 PF10046.4 gi|433592906|ref|YP_007282402.1| - 0.01 15.9 18.3 0.079 13.1 2.3 2.6 2 1 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 TMF_TATA_bd PF12325.3 gi|433592906|ref|YP_007282402.1| - 0.011 15.4 18.1 0.13 11.9 4.4 2.2 2 0 0 2 2 2 0 TATA element modulatory factor 1 TATA binding TSC22 PF01166.13 gi|433592906|ref|YP_007282402.1| - 0.012 15.5 3.4 0.012 15.5 2.4 3.1 3 1 1 4 4 2 0 TSC-22/dip/bun family TPR_MLP1_2 PF07926.7 gi|433592906|ref|YP_007282402.1| - 0.015 15.0 19.6 0.056 13.1 12.0 2.3 1 1 0 1 1 1 0 TPR/MLP1/MLP2-like protein Bap31 PF05529.7 gi|433592906|ref|YP_007282402.1| - 0.017 14.5 2.2 0.017 14.5 1.5 2.1 2 0 0 2 2 2 0 B-cell receptor-associated protein 31-like Cluap1 PF10234.4 gi|433592906|ref|YP_007282402.1| - 0.022 13.9 9.3 0.036 13.2 0.6 2.1 2 0 0 2 2 2 0 Clusterin-associated protein-1 Allexi_40kDa PF05549.6 gi|433592906|ref|YP_007282402.1| - 0.023 13.9 5.5 0.19 11.0 0.4 2.0 2 0 0 2 2 2 0 Allexivirus 40kDa protein Rab5-bind PF09311.6 gi|433592906|ref|YP_007282402.1| - 0.024 14.5 17.3 0.24 11.2 3.2 2.2 2 0 0 2 2 2 0 Rabaptin-like protein DivIVA PF05103.8 gi|433592906|ref|YP_007282402.1| - 0.024 14.6 18.3 0.17 11.9 4.5 2.1 2 0 0 2 2 2 0 DivIVA protein PilJ PF13675.1 gi|433592906|ref|YP_007282402.1| - 0.024 14.9 8.6 0.31 11.3 1.0 2.3 2 0 0 2 2 2 0 Type IV pili methyl-accepting chemotaxis transducer N-term FlaC_arch PF05377.6 gi|433592906|ref|YP_007282402.1| - 0.025 14.4 18.2 0.71 9.8 2.3 3.8 3 1 1 4 4 4 0 Flagella accessory protein C (FlaC) TMF_DNA_bd PF12329.3 gi|433592906|ref|YP_007282402.1| - 0.025 14.3 24.6 0.027 14.2 5.1 2.3 2 0 0 2 2 2 0 TATA element modulatory factor 1 DNA binding DUF607 PF04678.8 gi|433592906|ref|YP_007282402.1| - 0.026 14.4 9.7 0.075 12.9 2.7 2.1 1 1 1 2 2 2 0 Protein of unknown function, DUF607 Fmp27_WPPW PF10359.4 gi|433592906|ref|YP_007282402.1| - 0.03 12.7 8.1 0.19 10.0 0.8 2.0 2 0 0 2 2 2 0 RNA pol II promoter Fmp27 protein domain DUF812 PF05667.6 gi|433592906|ref|YP_007282402.1| - 0.035 12.6 17.8 0.27 9.6 4.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF812) Seryl_tRNA_N PF02403.17 gi|433592906|ref|YP_007282402.1| - 0.038 14.0 15.0 0.44 10.5 3.3 2.5 2 0 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain DUF948 PF06103.6 gi|433592906|ref|YP_007282402.1| - 0.038 13.8 11.3 0.8 9.6 1.4 2.4 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF948) Nsp1_C PF05064.8 gi|433592906|ref|YP_007282402.1| - 0.039 13.5 18.9 0.25 11.0 4.4 2.3 2 0 0 2 2 2 0 Nsp1-like C-terminal region DUF4201 PF13870.1 gi|433592906|ref|YP_007282402.1| - 0.041 13.3 12.2 0.46 9.9 2.7 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4201) Reo_sigmaC PF04582.7 gi|433592906|ref|YP_007282402.1| - 0.043 12.9 4.3 0.24 10.5 0.4 2.0 1 1 1 2 2 2 0 Reovirus sigma C capsid protein MAD PF05557.8 gi|433592906|ref|YP_007282402.1| - 0.043 11.9 15.6 0.095 10.7 10.8 1.5 1 1 0 1 1 1 0 Mitotic checkpoint protein FliJ PF02050.11 gi|433592906|ref|YP_007282402.1| - 0.046 13.7 25.3 0.023 14.7 4.8 2.3 1 1 1 2 2 2 0 Flagellar FliJ protein NTR2 PF15458.1 gi|433592906|ref|YP_007282402.1| - 0.049 12.8 22.2 0.35 10.0 3.8 2.2 2 0 0 2 2 2 0 Nineteen complex-related protein 2 MtrB PF05440.7 gi|433592906|ref|YP_007282402.1| - 0.053 13.5 4.7 1.6 8.8 0.4 2.6 2 1 1 3 3 2 0 Tetrahydromethanopterin S-methyltransferase subunit B DUF1465 PF07323.7 gi|433592906|ref|YP_007282402.1| - 0.06 12.9 4.2 0.63 9.6 0.2 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1465) DUF641 PF04859.7 gi|433592906|ref|YP_007282402.1| - 0.061 13.0 8.8 0.22 11.3 0.7 2.2 2 0 0 2 2 2 0 Plant protein of unknown function (DUF641) Atg14 PF10186.4 gi|433592906|ref|YP_007282402.1| - 0.061 12.2 10.6 0.35 9.7 0.8 2.0 2 0 0 2 2 2 0 UV radiation resistance protein and autophagy-related subunit 14 IFT57 PF10498.4 gi|433592906|ref|YP_007282402.1| - 0.063 12.0 14.3 0.46 9.1 2.4 2.1 2 0 0 2 2 2 0 Intra-flagellar transport protein 57 Cob_adeno_trans PF01923.13 gi|433592906|ref|YP_007282402.1| - 0.063 13.0 10.2 0.034 13.9 1.8 2.6 1 1 1 2 2 2 0 Cobalamin adenosyltransferase Spectrin PF00435.16 gi|433592906|ref|YP_007282402.1| - 0.064 13.5 17.1 0.66 10.2 3.2 2.2 2 0 0 2 2 2 0 Spectrin repeat Cytochrom_C_2 PF01322.15 gi|433592906|ref|YP_007282402.1| - 0.066 13.7 7.5 0.074 13.5 1.7 2.1 1 1 1 2 2 2 0 Cytochrome C' Sipho_Gp157 PF05565.6 gi|433592906|ref|YP_007282402.1| - 0.066 12.7 7.2 0.2 11.2 0.8 2.2 2 0 0 2 2 2 0 Siphovirus Gp157 DUF342 PF03961.8 gi|433592906|ref|YP_007282402.1| - 0.068 11.5 14.0 0.39 9.0 1.6 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF342) Tektin PF03148.9 gi|433592906|ref|YP_007282402.1| - 0.078 11.5 16.1 0.046 12.2 2.5 2.1 2 0 0 2 2 2 0 Tektin family Herpes_UL6 PF01763.11 gi|433592906|ref|YP_007282402.1| - 0.081 11.0 6.4 0.14 10.3 1.2 2.0 2 0 0 2 2 2 0 Herpesvirus UL6 like DUF4446 PF14584.1 gi|433592906|ref|YP_007282402.1| - 0.087 12.6 11.5 0.41 10.4 2.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF4446) Vps51 PF08700.6 gi|433592906|ref|YP_007282402.1| - 0.09 12.6 9.9 0.57 10.0 1.3 3.0 3 1 1 4 4 3 0 Vps51/Vps67 DUF2353 PF09789.4 gi|433592906|ref|YP_007282402.1| - 0.1 11.8 12.1 0.37 9.9 7.5 1.8 1 1 0 1 1 1 0 Uncharacterized coiled-coil protein (DUF2353) COG5 PF10392.4 gi|433592906|ref|YP_007282402.1| - 0.1 12.5 3.3 3.4 7.6 0.2 2.2 2 0 0 2 2 2 0 Golgi transport complex subunit 5 DASH_Dam1 PF08653.5 gi|433592906|ref|YP_007282402.1| - 0.1 12.3 6.6 2.1 8.2 0.2 2.8 2 0 0 2 2 2 0 DASH complex subunit Dam1 Syntaxin_2 PF14523.1 gi|433592906|ref|YP_007282402.1| - 0.11 12.5 6.2 1.1 9.2 0.3 2.3 2 0 0 2 2 2 0 Syntaxin-like protein Gp-FAR-1 PF05823.7 gi|433592906|ref|YP_007282402.1| - 0.11 12.4 6.2 0.15 11.9 1.1 2.3 2 1 0 2 2 2 0 Nematode fatty acid retinoid binding protein (Gp-FAR-1) ATP-synt_D PF01813.12 gi|433592906|ref|YP_007282402.1| - 0.11 11.9 6.0 0.52 9.8 0.8 2.2 2 0 0 2 2 2 0 ATP synthase subunit D Not3 PF04065.10 gi|433592906|ref|YP_007282402.1| - 0.12 11.5 14.3 0.05 12.8 2.7 2.1 2 0 0 2 2 2 0 Not1 N-terminal domain, CCR4-Not complex component Uds1 PF15456.1 gi|433592906|ref|YP_007282402.1| - 0.13 12.2 13.2 0.57 10.1 9.1 1.9 1 1 0 1 1 1 0 Up-regulated During Septation LUC7 PF03194.10 gi|433592906|ref|YP_007282402.1| - 0.14 11.6 12.9 0.41 10.1 1.7 2.0 2 0 0 2 2 2 0 LUC7 N_terminus Sec34 PF04136.10 gi|433592906|ref|YP_007282402.1| - 0.14 11.8 8.1 0.91 9.2 0.5 2.1 2 0 0 2 2 2 0 Sec34-like family Katanin_con80 PF13925.1 gi|433592906|ref|YP_007282402.1| - 0.16 11.7 3.4 5.9 6.5 0.9 2.1 2 0 0 2 2 2 0 con80 domain of Katanin DUF2937 PF11157.3 gi|433592906|ref|YP_007282402.1| - 0.17 11.1 11.5 0.23 10.7 1.4 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2937) bZIP_1 PF00170.16 gi|433592906|ref|YP_007282402.1| - 0.18 11.7 17.0 0.18 11.7 2.1 2.9 2 1 1 3 3 3 0 bZIP transcription factor ORF6C PF10552.4 gi|433592906|ref|YP_007282402.1| - 0.18 11.5 12.7 1.1 9.0 1.2 2.3 2 0 0 2 2 2 0 ORF6C domain Viral_P18 PF04521.8 gi|433592906|ref|YP_007282402.1| - 0.18 11.2 10.1 1.5 8.2 1.4 2.3 2 0 0 2 2 2 0 ssRNA positive strand viral 18kD cysteine rich protein DUF2968 PF11180.3 gi|433592906|ref|YP_007282402.1| - 0.19 11.1 21.5 0.49 9.7 4.6 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2968) TelA PF05816.6 gi|433592906|ref|YP_007282402.1| - 0.2 10.3 19.5 0.48 9.0 5.1 2.0 2 0 0 2 2 2 0 Toxic anion resistance protein (TelA) Fib_alpha PF08702.5 gi|433592906|ref|YP_007282402.1| - 0.2 11.7 13.5 2.2 8.4 0.7 2.4 2 1 0 2 2 2 0 Fibrinogen alpha/beta chain family GrpE PF01025.14 gi|433592906|ref|YP_007282402.1| - 0.2 11.1 16.8 0.39 10.2 4.1 2.2 2 0 0 2 2 2 0 GrpE DUF2514 PF10721.4 gi|433592906|ref|YP_007282402.1| - 0.21 11.2 7.2 2.8 7.5 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2514) DUF724 PF05266.9 gi|433592906|ref|YP_007282402.1| - 0.21 11.2 11.7 0.31 10.6 1.5 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF724) Hemagglutinin PF00509.13 gi|433592906|ref|YP_007282402.1| - 0.22 9.5 8.2 1.6 6.7 1.6 2.1 2 0 0 2 2 2 0 Haemagglutinin DUF4515 PF14988.1 gi|433592906|ref|YP_007282402.1| - 0.23 11.1 23.8 0.26 10.9 6.1 2.3 2 1 0 2 2 2 0 Domain of unknown function (DUF4515) LLC1 PF14945.1 gi|433592906|ref|YP_007282402.1| - 0.24 11.7 1.7 9.5 6.5 0.0 2.1 2 0 0 2 2 2 0 Normal lung function maintenance, Low in Lung Cancer 1 protein CASP_C PF08172.7 gi|433592906|ref|YP_007282402.1| - 0.24 10.3 11.5 0.47 9.4 8.0 1.4 1 1 0 1 1 1 0 CASP C terminal STAT_alpha PF01017.15 gi|433592906|ref|YP_007282402.1| - 0.24 11.0 13.9 1.8 8.2 1.1 2.2 2 0 0 2 2 2 0 STAT protein, all-alpha domain DUF4407 PF14362.1 gi|433592906|ref|YP_007282402.1| - 0.25 10.2 16.9 11 4.9 11.7 2.1 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) Synaptobrevin PF00957.16 gi|433592906|ref|YP_007282402.1| - 0.27 10.8 16.3 0.073 12.6 3.7 2.8 2 1 1 3 3 3 0 Synaptobrevin EMP24_GP25L PF01105.19 gi|433592906|ref|YP_007282402.1| - 0.27 10.9 14.7 0.79 9.4 2.5 2.1 2 0 0 2 2 2 0 emp24/gp25L/p24 family/GOLD Tmemb_cc2 PF10267.4 gi|433592906|ref|YP_007282402.1| - 0.28 9.7 12.8 0.84 8.1 2.2 2.0 2 0 0 2 2 2 0 Predicted transmembrane and coiled-coil 2 protein Cauli_AT PF03233.8 gi|433592906|ref|YP_007282402.1| - 0.29 10.8 7.7 3 7.5 0.6 2.2 2 0 0 2 2 2 0 Aphid transmission protein LPP PF04728.8 gi|433592906|ref|YP_007282402.1| - 0.29 10.9 0.2 0.29 10.9 0.1 2.4 2 0 0 2 2 2 0 Lipoprotein leucine-zipper Med4 PF10018.4 gi|433592906|ref|YP_007282402.1| - 0.29 10.4 16.3 0.39 10.0 2.1 2.3 2 0 0 2 2 2 0 Vitamin-D-receptor interacting Mediator subunit 4 FH2 PF02181.18 gi|433592906|ref|YP_007282402.1| - 0.3 9.9 7.8 1.1 8.0 0.7 2.1 2 0 0 2 2 2 0 Formin Homology 2 Domain Sas10_Utp3 PF04000.10 gi|433592906|ref|YP_007282402.1| - 0.3 11.2 9.4 3 8.1 0.9 2.4 2 0 0 2 2 2 0 Sas10/Utp3/C1D family DegS PF05384.6 gi|433592906|ref|YP_007282402.1| - 0.32 10.1 11.9 1.8 7.7 1.1 2.4 2 0 0 2 2 2 0 Sensor protein DegS DUF1192 PF06698.6 gi|433592906|ref|YP_007282402.1| - 0.36 10.6 15.5 1.4 8.7 2.8 2.7 2 1 0 2 2 2 0 Protein of unknown function (DUF1192) Snf7 PF03357.16 gi|433592906|ref|YP_007282402.1| - 0.36 10.1 17.8 0.39 10.0 4.5 2.8 2 1 0 2 2 2 0 Snf7 T2SF PF00482.18 gi|433592906|ref|YP_007282402.1| - 0.39 10.6 2.1 11 5.9 0.1 2.2 2 0 0 2 2 2 0 Type II secretion system (T2SS), protein F Occludin_ELL PF07303.8 gi|433592906|ref|YP_007282402.1| - 0.4 11.4 11.8 1.5 9.6 0.6 2.3 2 1 0 2 2 2 0 Occludin homology domain Tnp_P_element PF12017.3 gi|433592906|ref|YP_007282402.1| - 0.4 9.8 8.6 0.61 9.2 0.1 2.1 1 1 1 2 2 2 0 Transposase protein ATG16 PF08614.6 gi|433592906|ref|YP_007282402.1| - 0.41 10.4 20.1 7.2 6.3 3.4 2.0 1 1 0 1 1 1 0 Autophagy protein 16 (ATG16) DUF3552 PF12072.3 gi|433592906|ref|YP_007282402.1| - 0.44 9.7 20.7 0.16 11.1 5.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF3552) GvpK PF05121.7 gi|433592906|ref|YP_007282402.1| - 0.44 10.3 16.7 0.98 9.2 2.2 2.4 2 0 0 2 2 2 0 Gas vesicle protein K V_ATPase_I PF01496.14 gi|433592906|ref|YP_007282402.1| - 0.46 8.2 16.6 0.76 7.5 3.9 2.0 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family FliD_N PF02465.13 gi|433592906|ref|YP_007282402.1| - 0.49 10.7 9.2 0.38 11.1 0.2 2.5 1 1 1 2 2 2 0 Flagellar hook-associated protein 2 N-terminus Snapin_Pallidin PF14712.1 gi|433592906|ref|YP_007282402.1| - 0.5 10.7 23.1 2.3 8.6 3.3 3.5 2 2 1 3 3 3 0 Snapin/Pallidin Jnk-SapK_ap_N PF09744.4 gi|433592906|ref|YP_007282402.1| - 0.51 10.3 12.9 0.34 10.8 1.9 2.1 2 0 0 2 2 2 0 JNK_SAPK-associated protein-1 DASH_Dad3 PF08656.5 gi|433592906|ref|YP_007282402.1| - 0.53 10.0 9.9 4.6 7.0 1.5 2.6 3 0 0 3 3 2 0 DASH complex subunit Dad3 YlqD PF11068.3 gi|433592906|ref|YP_007282402.1| - 0.57 10.2 25.1 0.42 10.6 5.6 2.6 2 1 0 2 2 2 0 YlqD protein Syntaxin PF00804.20 gi|433592906|ref|YP_007282402.1| - 0.61 10.2 15.9 41 4.4 11.0 2.4 1 1 0 1 1 1 0 Syntaxin SPT16 PF08644.6 gi|433592906|ref|YP_007282402.1| - 0.66 9.8 7.0 1.6 8.5 0.1 2.1 2 0 0 2 2 2 0 FACT complex subunit (SPT16/CDC68) CENP-Q PF13094.1 gi|433592906|ref|YP_007282402.1| - 0.67 9.9 22.8 0.29 11.1 5.1 2.1 2 0 0 2 2 2 0 CENP-Q, a CENPA-CAD centromere complex subunit Macoilin PF09726.4 gi|433592906|ref|YP_007282402.1| - 0.69 8.1 11.4 0.34 9.1 2.6 2.0 2 0 0 2 2 2 0 Transmembrane protein Vps5 PF09325.5 gi|433592906|ref|YP_007282402.1| - 0.72 9.0 8.3 1.2 8.3 0.2 2.1 2 0 0 2 2 2 0 Vps5 C terminal like DUF1515 PF07439.6 gi|433592906|ref|YP_007282402.1| - 0.73 9.6 9.6 0.22 11.3 1.2 2.2 1 1 0 2 2 2 0 Protein of unknown function (DUF1515) Sod_Fe_N PF00081.17 gi|433592906|ref|YP_007282402.1| - 0.74 10.1 2.6 1.3 9.3 0.4 2.1 2 0 0 2 2 1 0 Iron/manganese superoxide dismutases, alpha-hairpin domain Fzo_mitofusin PF04799.8 gi|433592906|ref|YP_007282402.1| - 0.76 9.1 12.7 0.67 9.3 2.0 2.2 2 0 0 2 2 2 0 fzo-like conserved region H-kinase_dim PF02895.9 gi|433592906|ref|YP_007282402.1| - 0.83 10.0 16.1 0.2 12.0 2.0 2.9 2 1 0 2 2 2 0 Signal transducing histidine kinase, homodimeric domain DUF3847 PF12958.2 gi|433592906|ref|YP_007282402.1| - 0.85 9.4 20.5 1.4 8.7 3.6 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF3847) IL6 PF00489.12 gi|433592906|ref|YP_007282402.1| - 0.88 9.1 6.2 1.4 8.5 0.2 2.2 2 0 0 2 2 2 0 Interleukin-6/G-CSF/MGF family DUF3186 PF11382.3 gi|433592906|ref|YP_007282402.1| - 0.92 8.5 17.2 1.8 7.6 4.4 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF3186) COG6 PF06419.6 gi|433592906|ref|YP_007282402.1| - 0.94 7.5 11.4 1.9 6.5 1.3 2.0 2 0 0 2 2 2 0 Conserved oligomeric complex COG6 bZIP_Maf PF03131.12 gi|433592906|ref|YP_007282402.1| - 0.96 9.7 19.7 3 8.1 4.3 2.4 2 1 0 2 2 2 0 bZIP Maf transcription factor HR1 PF02185.11 gi|433592906|ref|YP_007282402.1| - 0.97 9.2 20.4 1.8 8.3 3.3 2.4 2 1 0 2 2 2 0 Hr1 repeat PhoU PF01895.14 gi|433592906|ref|YP_007282402.1| - 1 9.8 8.3 0.39 11.1 1.0 2.5 2 1 0 2 2 2 0 PhoU domain HAUS6_N PF14661.1 gi|433592906|ref|YP_007282402.1| - 1.1 8.6 15.6 1.1 8.6 1.0 2.0 1 1 1 2 2 2 0 HAUS augmin-like complex subunit 6 N-terminus MRP-L28 PF09812.4 gi|433592906|ref|YP_007282402.1| - 1.1 9.1 11.2 4.1 7.2 1.1 2.1 2 0 0 2 2 2 0 Mitochondrial ribosomal protein L28 MIS13 PF08202.6 gi|433592906|ref|YP_007282402.1| - 1.1 8.3 10.7 4.1 6.3 7.4 1.7 1 1 0 1 1 1 0 Mis12-Mtw1 protein family AAA_27 PF13514.1 gi|433592906|ref|YP_007282402.1| - 1.1 6.8 18.6 3.7 5.0 12.9 1.6 1 1 0 1 1 1 0 AAA domain Syntaxin-6_N PF09177.6 gi|433592906|ref|YP_007282402.1| - 1.1 9.7 15.1 0.88 10.0 1.4 2.8 2 1 0 2 2 2 0 Syntaxin 6, N-terminal V-ATPase_C PF03223.10 gi|433592906|ref|YP_007282402.1| - 1.1 8.0 4.3 2.6 6.8 0.1 2.0 2 0 0 2 2 2 0 V-ATPase subunit C COG2 PF06148.6 gi|433592906|ref|YP_007282402.1| - 1.1 9.0 12.1 0.39 10.5 1.4 2.2 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 SYCE1 PF15233.1 gi|433592906|ref|YP_007282402.1| - 1.2 9.1 14.9 3 7.7 1.6 2.2 2 0 0 2 2 2 0 Synaptonemal complex central element protein 1 DUF3251 PF11622.3 gi|433592906|ref|YP_007282402.1| - 1.2 8.5 11.8 1.3 8.4 0.7 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3251) HrpB7 PF09486.5 gi|433592906|ref|YP_007282402.1| - 1.2 9.0 13.7 14 5.6 9.5 2.2 1 1 0 1 1 1 0 Bacterial type III secretion protein (HrpB7) P4Ha_N PF08336.6 gi|433592906|ref|YP_007282402.1| - 1.2 8.9 10.3 5.3 6.8 2.0 2.3 2 0 0 2 2 2 0 Prolyl 4-Hydroxylase alpha-subunit, N-terminal region Cep57_MT_bd PF06657.8 gi|433592906|ref|YP_007282402.1| - 1.3 9.0 13.2 4.6 7.2 3.3 2.6 2 0 0 2 2 2 0 Centrosome microtubule-binding domain of Cep57 Cep57_CLD_2 PF14197.1 gi|433592906|ref|YP_007282402.1| - 1.3 9.0 19.8 0.79 9.7 5.0 2.4 2 0 0 2 2 2 0 Centrosome localisation domain of PPC89 DUF869 PF05911.6 gi|433592906|ref|YP_007282402.1| - 1.4 7.0 14.5 2.5 6.2 10.0 1.4 1 1 0 1 1 1 0 Plant protein of unknown function (DUF869) PRTP PF01366.13 gi|433592906|ref|YP_007282402.1| - 1.4 6.8 5.8 2.2 6.1 4.0 1.3 1 1 0 1 1 1 0 Herpesvirus processing and transport protein Prefoldin_3 PF13758.1 gi|433592906|ref|YP_007282402.1| - 1.5 8.6 8.1 53 3.6 5.7 2.5 1 1 0 1 1 1 0 Prefoldin subunit LXG PF04740.7 gi|433592906|ref|YP_007282402.1| - 1.5 8.5 13.5 3.1 7.5 2.2 2.4 2 1 0 2 2 2 0 LXG domain of WXG superfamily Nup54 PF13874.1 gi|433592906|ref|YP_007282402.1| - 1.5 8.5 13.3 2.4 7.8 2.4 2.2 2 0 0 2 2 2 0 Nucleoporin complex subunit 54 TraF_2 PF13729.1 gi|433592906|ref|YP_007282402.1| - 1.5 7.5 7.5 3.9 6.1 3.4 2.0 1 1 1 2 2 2 0 F plasmid transfer operon, TraF, protein ISG65-75 PF11727.3 gi|433592906|ref|YP_007282402.1| - 1.5 7.8 9.0 14 4.6 6.3 2.0 1 1 0 1 1 1 0 Invariant surface glycoprotein HemX PF04375.9 gi|433592906|ref|YP_007282402.1| - 1.5 7.3 12.7 1.3 7.5 1.4 2.2 2 0 0 2 2 2 0 HemX TACC PF05010.9 gi|433592906|ref|YP_007282402.1| - 1.6 8.4 13.6 3.1 7.5 9.4 1.4 1 1 0 1 1 1 0 Transforming acidic coiled-coil-containing protein (TACC) MCPsignal PF00015.16 gi|433592906|ref|YP_007282402.1| - 1.6 8.1 13.2 1 8.8 3.2 2.1 1 1 0 1 1 1 0 Methyl-accepting chemotaxis protein (MCP) signalling domain DUF2408 PF10303.4 gi|433592906|ref|YP_007282402.1| - 1.7 8.7 9.8 5.8 7.0 6.8 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF2408) DUF3407 PF11887.3 gi|433592906|ref|YP_007282402.1| - 1.8 7.8 5.2 5 6.3 0.9 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3407) DUF2130 PF09903.4 gi|433592906|ref|YP_007282402.1| - 1.8 7.2 10.5 1.6 7.3 1.9 2.2 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2130) RTBV_P46 PF06216.6 gi|433592906|ref|YP_007282402.1| - 1.9 7.2 6.7 4 6.1 0.9 2.0 2 0 0 2 2 2 0 Rice tungro bacilliform virus P46 protein Lip_prot_lig_C PF10437.4 gi|433592906|ref|YP_007282402.1| - 1.9 8.2 4.9 15 5.3 0.2 2.4 2 0 0 2 2 2 0 Bacterial lipoate protein ligase C-terminus Muted PF14942.1 gi|433592906|ref|YP_007282402.1| - 2.1 8.1 11.7 5.6 6.8 2.0 2.2 2 0 0 2 2 2 0 Organelle biogenesis, Muted-like protein HAUS5 PF14817.1 gi|433592906|ref|YP_007282402.1| - 2.2 6.7 13.3 0.45 8.9 0.9 2.0 2 0 0 2 2 2 0 HAUS augmin-like complex subunit 5 CCDC155 PF14662.1 gi|433592906|ref|YP_007282402.1| - 2.2 7.8 25.8 0.97 8.9 8.5 2.2 2 1 0 2 2 2 0 Coiled-coil region of CCDC155 T2SM PF04612.7 gi|433592906|ref|YP_007282402.1| - 2.3 7.9 14.7 3.2 7.5 0.6 2.4 2 1 0 2 2 2 0 Type II secretion system (T2SS), protein M CorA PF01544.13 gi|433592906|ref|YP_007282402.1| - 2.3 7.1 15.7 27 3.6 10.9 2.0 1 1 0 1 1 1 0 CorA-like Mg2+ transporter protein KfrA_N PF11740.3 gi|433592906|ref|YP_007282402.1| - 2.4 8.6 23.3 0.64 10.4 4.8 2.5 2 0 0 2 2 2 0 Plasmid replication region DNA-binding N-term USP8_interact PF08941.5 gi|433592906|ref|YP_007282402.1| - 2.4 7.4 6.2 5.8 6.1 1.5 2.1 2 0 0 2 2 2 0 USP8 interacting FbpA PF05833.6 gi|433592906|ref|YP_007282402.1| - 2.4 6.6 15.5 0.85 8.0 2.4 2.1 2 0 0 2 2 2 0 Fibronectin-binding protein A N-terminus (FbpA) Cortex-I_coil PF09304.5 gi|433592906|ref|YP_007282402.1| - 2.5 8.2 15.5 4.4 7.3 3.5 2.3 2 0 0 2 2 2 0 Cortexillin I, coiled coil Corona_S2 PF01601.11 gi|433592906|ref|YP_007282402.1| - 2.5 6.0 7.0 0.57 8.2 1.2 1.9 1 1 1 2 2 2 0 Coronavirus S2 glycoprotein DUF3086 PF11285.3 gi|433592906|ref|YP_007282402.1| - 2.7 6.7 10.4 1.5 7.5 1.2 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3086) DUF16 PF01519.11 gi|433592906|ref|YP_007282402.1| - 2.8 8.2 15.6 1.7 8.8 2.3 2.3 2 0 0 2 2 2 0 Protein of unknown function DUF16 Bacillus_HBL PF05791.6 gi|433592906|ref|YP_007282402.1| - 2.9 7.2 10.9 2.4 7.5 1.1 2.2 2 0 0 2 2 2 0 Bacillus haemolytic enterotoxin (HBL) End3 PF12761.2 gi|433592906|ref|YP_007282402.1| - 2.9 7.4 11.9 6.3 6.3 0.7 2.4 2 1 0 2 2 2 0 Actin cytoskeleton-regulatory complex protein END3 SAS4 PF15460.1 gi|433592906|ref|YP_007282402.1| - 2.9 7.7 12.2 0.48 10.3 2.6 2.8 2 2 0 2 2 2 0 Something about silencing, SAS, complex subunit 4 CDC37_N PF03234.9 gi|433592906|ref|YP_007282402.1| - 2.9 8.1 11.0 7 6.9 7.6 1.6 1 1 0 1 1 1 0 Cdc37 N terminal kinase binding Sec2p PF06428.6 gi|433592906|ref|YP_007282402.1| - 3 7.7 15.3 5 7.0 2.1 2.3 2 0 0 2 2 2 0 GDP/GTP exchange factor Sec2p DUF2203 PF09969.4 gi|433592906|ref|YP_007282402.1| - 3.1 8.0 11.6 2.6 8.2 0.6 2.3 2 1 0 2 2 2 0 Uncharacterized conserved protein (DUF2203) MutS_IV PF05190.13 gi|433592906|ref|YP_007282402.1| - 3.3 7.9 11.7 6.2 7.0 1.7 2.8 3 1 0 3 3 2 0 MutS family domain IV GP41 PF00517.12 gi|433592906|ref|YP_007282402.1| - 3.4 7.1 12.6 3 7.3 1.4 2.6 3 0 0 3 3 2 0 Retroviral envelope protein CK2S PF15011.1 gi|433592906|ref|YP_007282402.1| - 3.4 7.4 11.7 1.7 8.4 1.0 2.3 2 1 0 2 2 2 0 Casein Kinase 2 substrate Geminin PF07412.7 gi|433592906|ref|YP_007282402.1| - 3.5 7.2 11.6 0.35 10.5 1.9 2.1 2 0 0 2 2 2 0 Geminin DUF4482 PF14818.1 gi|433592906|ref|YP_007282402.1| - 3.6 8.2 15.6 0.67 10.6 2.4 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4482) HAUS-augmin3 PF14932.1 gi|433592906|ref|YP_007282402.1| - 3.7 6.6 18.1 1.4 8.0 3.8 2.1 2 0 0 2 2 2 0 HAUS augmin-like complex subunit 3 XhlA PF10779.4 gi|433592906|ref|YP_007282402.1| - 3.7 7.5 21.5 0.69 9.8 3.4 3.1 2 1 1 3 3 3 0 Haemolysin XhlA Med10 PF09748.4 gi|433592906|ref|YP_007282402.1| - 4 7.2 9.4 2.1e+02 1.6 6.5 2.1 1 1 0 1 1 1 0 Transcription factor subunit Med10 of Mediator complex Prominin PF05478.6 gi|433592906|ref|YP_007282402.1| - 4 4.8 10.6 79 0.5 7.3 2.0 1 1 0 1 1 1 0 Prominin TerB PF05099.8 gi|433592906|ref|YP_007282402.1| - 4.1 7.1 11.1 2 8.1 2.9 2.1 2 0 0 2 2 2 0 Tellurite resistance protein TerB Nnf1 PF03980.9 gi|433592906|ref|YP_007282402.1| - 4.1 7.4 17.4 3.8 7.5 2.2 2.7 2 1 0 2 2 2 0 Nnf1 HOOK PF05622.7 gi|433592906|ref|YP_007282402.1| - 4.2 5.0 22.7 9 3.9 15.7 1.5 1 1 0 1 1 1 0 HOOK protein ERM PF00769.14 gi|433592906|ref|YP_007282402.1| - 4.2 6.8 24.7 0.91 9.0 7.2 2.1 1 1 0 2 2 2 0 Ezrin/radixin/moesin family Kinetocho_Slk19 PF12709.2 gi|433592906|ref|YP_007282402.1| - 4.2 7.5 19.0 5.5 7.1 3.7 2.6 2 1 0 2 2 2 0 Central kinetochore-associated DASH_Dad2 PF08654.5 gi|433592906|ref|YP_007282402.1| - 4.3 7.3 14.4 2.3 8.2 0.8 2.8 2 1 0 2 2 2 0 DASH complex subunit Dad2 BCAS2 PF05700.6 gi|433592906|ref|YP_007282402.1| - 4.3 6.7 17.9 1.6 8.1 3.7 2.2 2 0 0 2 2 2 0 Breast carcinoma amplified sequence 2 (BCAS2) Helicase_IV_N PF12462.3 gi|433592906|ref|YP_007282402.1| - 4.6 6.8 14.8 1.1 8.8 1.9 2.4 2 1 0 2 2 2 0 DNA helicase IV / RNA helicase N terminal Filament PF00038.16 gi|433592906|ref|YP_007282402.1| - 5 6.5 22.4 4.7 6.5 5.1 2.1 1 1 1 2 2 2 0 Intermediate filament protein DUF2400 PF09674.5 gi|433592906|ref|YP_007282402.1| - 5.1 6.7 5.5 18 4.9 0.4 2.0 1 1 0 2 2 2 0 Protein of unknown function (DUF2400) FemAB PF02388.11 gi|433592906|ref|YP_007282402.1| - 5.2 5.6 13.1 0.92 8.1 1.8 2.0 1 1 1 2 2 2 0 FemAB family DUF1759 PF03564.10 gi|433592906|ref|YP_007282402.1| - 5.4 6.8 8.4 11 5.7 1.1 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF1759) Nop25 PF09805.4 gi|433592906|ref|YP_007282402.1| - 5.7 7.0 12.8 14 5.7 4.3 2.1 2 0 0 2 2 2 0 Nucleolar protein 12 (25kDa) DUF2802 PF10975.3 gi|433592906|ref|YP_007282402.1| - 6.1 6.6 25.2 3 7.6 4.2 3.7 2 2 0 2 2 2 0 Protein of unknown function (DUF2802) bZIP_2 PF07716.10 gi|433592906|ref|YP_007282402.1| - 6.3 6.6 29.6 3.8 7.4 0.9 3.2 2 1 1 3 3 3 0 Basic region leucine zipper HSCB_C PF07743.8 gi|433592906|ref|YP_007282402.1| - 6.4 7.3 22.2 5.2 7.6 3.1 2.6 2 1 1 3 3 2 0 HSCB C-terminal oligomerisation domain BRI3BP PF14965.1 gi|433592906|ref|YP_007282402.1| - 6.5 6.0 6.4 13 5.0 0.5 2.7 2 1 0 2 2 2 0 Negative regulator of p53/TP53 Osmo_CC PF08946.5 gi|433592906|ref|YP_007282402.1| - 6.5 6.8 29.3 4.1 7.5 7.8 4.1 3 2 1 4 4 3 0 Osmosensory transporter coiled coil DUF2443 PF10398.4 gi|433592906|ref|YP_007282402.1| - 6.6 6.6 7.3 2.9 7.7 0.6 2.9 3 1 1 4 4 2 0 Protein of unknown function (DUF2443) WXG100 PF06013.7 gi|433592906|ref|YP_007282402.1| - 6.6 6.8 20.9 14 5.7 3.0 3.5 2 2 0 2 2 2 0 Proteins of 100 residues with WXG AKNA PF12443.3 gi|433592906|ref|YP_007282402.1| - 6.8 6.7 17.9 6.5 6.8 2.2 2.7 1 1 1 2 2 2 0 AT-hook-containing transcription factor DUF4391 PF14335.1 gi|433592906|ref|YP_007282402.1| - 6.8 6.0 13.3 0.51 9.7 1.7 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4391) THOC7 PF05615.8 gi|433592906|ref|YP_007282402.1| - 7.2 6.8 12.3 2.3 8.4 1.5 2.3 2 0 0 2 2 2 0 Tho complex subunit 7 DUF4349 PF14257.1 gi|433592906|ref|YP_007282402.1| - 7.5 5.7 22.1 6.3 5.9 7.1 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4349) RmuC PF02646.11 gi|433592906|ref|YP_007282402.1| - 8.1 5.1 16.1 3.1 6.5 2.4 2.1 2 0 0 2 2 2 0 RmuC family YPEB PF14620.1 gi|433592906|ref|YP_007282402.1| - 8.5 5.2 17.0 3.3 6.6 1.5 2.0 1 1 1 2 2 2 0 YpeB sporulation Histone_HNS PF00816.16 gi|433592906|ref|YP_007282402.1| - 9.4 6.8 15.3 2.7 8.5 2.8 2.6 2 0 0 2 2 2 0 H-NS histone family ParB PF08775.5 gi|433592906|ref|YP_007282402.1| - 10 6.4 10.9 9.4 6.5 2.3 2.6 2 1 1 3 3 3 0 ParB family MtrG PF04210.8 gi|433592906|ref|YP_007282402.1| - 10 5.9 6.4 21 4.8 0.1 2.7 2 1 0 2 2 2 0 Tetrahydromethanopterin S-methyltransferase, subunit G Ribosomal_L18ae PF01775.12 gi|433592907|ref|YP_007282403.1| - 1.5e-08 34.5 0.0 1.6e-08 34.4 0.0 1.0 1 0 0 1 1 1 1 Ribosomal L18ae/LX protein domain ASCH PF04266.9 gi|433592908|ref|YP_007282404.1| - 0.011 16.0 0.0 0.013 15.8 0.0 1.2 1 0 0 1 1 1 0 ASCH domain DUF4203 PF13886.1 gi|433592909|ref|YP_007282405.1| - 0.012 15.1 0.3 0.013 14.9 0.2 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4203) MFS_1 PF07690.11 gi|433592909|ref|YP_007282405.1| - 0.36 9.5 8.6 0.38 9.4 6.0 1.0 1 0 0 1 1 1 0 Major Facilitator Superfamily eIF-6 PF01912.13 gi|433592910|ref|YP_007282406.1| - 1.4e-70 236.4 0.1 1.7e-70 236.1 0.1 1.0 1 0 0 1 1 1 1 eIF-6 family Ribosomal_L31e PF01198.14 gi|433592911|ref|YP_007282407.1| - 6.9e-24 83.3 0.2 8.1e-24 83.1 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L31e Ribosomal_L39 PF00832.15 gi|433592912|ref|YP_007282408.1| - 3.5e-21 74.3 8.0 4.1e-21 74.1 5.5 1.1 1 0 0 1 1 1 1 Ribosomal L39 protein Peptidase_M48 PF01435.13 gi|433592913|ref|YP_007282409.1| - 1.7e-25 89.8 0.1 8.1e-25 87.7 0.1 2.0 1 1 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.6 gi|433592913|ref|YP_007282409.1| - 9.6e-06 24.7 0.3 9.6e-06 24.7 0.2 2.2 2 1 1 3 3 3 1 BlaR1 peptidase M56 SprT-like PF10263.4 gi|433592913|ref|YP_007282409.1| - 0.0051 16.4 0.0 0.0091 15.6 0.0 1.3 1 0 0 1 1 1 1 SprT-like family Wzy_C PF04932.10 gi|433592913|ref|YP_007282409.1| - 0.033 13.9 5.2 0.81 9.4 1.8 2.2 2 0 0 2 2 2 0 O-Antigen ligase DUF2207 PF09972.4 gi|433592913|ref|YP_007282409.1| - 0.092 11.3 0.3 0.11 11.0 0.2 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) DUF45 PF01863.12 gi|433592913|ref|YP_007282409.1| - 0.12 12.0 0.0 0.22 11.3 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function DUF45 Peptidase_MA_2 PF13485.1 gi|433592913|ref|YP_007282409.1| - 0.13 12.3 0.0 0.19 11.7 0.0 1.4 1 1 0 1 1 1 0 Peptidase MA superfamily DUF4131 PF13567.1 gi|433592913|ref|YP_007282409.1| - 0.51 9.7 4.6 0.99 8.7 3.2 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) Mlo PF03094.10 gi|433592913|ref|YP_007282409.1| - 0.53 8.3 7.4 0.8 7.7 5.1 1.1 1 0 0 1 1 1 0 Mlo family LigT_PEase PF02834.11 gi|433592915|ref|YP_007282411.1| - 4.5e-26 90.6 0.0 8.1e-13 48.1 0.0 2.1 2 0 0 2 2 2 2 LigT like Phosphoesterase 2_5_RNA_ligase2 PF13563.1 gi|433592915|ref|YP_007282411.1| - 1.2e-20 73.7 0.1 1.4e-20 73.5 0.1 1.0 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily AKAP7_NLS PF10469.4 gi|433592915|ref|YP_007282411.1| - 1.2e-09 38.2 0.0 1.4e-09 37.9 0.0 1.1 1 0 0 1 1 1 1 AKAP7 2'5' RNA ligase-like domain CPDase PF07823.6 gi|433592915|ref|YP_007282411.1| - 0.071 12.5 0.0 0.19 11.2 0.0 1.6 2 0 0 2 2 2 0 Cyclic phosphodiesterase-like protein Amino_oxidase PF01593.19 gi|433592916|ref|YP_007282412.1| - 2.7e-21 76.2 0.3 1e-17 64.3 0.1 2.8 2 1 0 2 2 2 2 Flavin containing amine oxidoreductase DAO PF01266.19 gi|433592916|ref|YP_007282412.1| - 2.2e-16 59.7 0.7 1.5e-08 33.9 0.1 2.6 2 1 0 2 2 2 2 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|433592916|ref|YP_007282412.1| - 1.2e-14 54.0 0.3 3.9e-14 52.4 0.0 2.0 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.19 gi|433592916|ref|YP_007282412.1| - 3.2e-11 42.7 1.2 1.9e-07 30.3 0.5 2.2 2 0 0 2 2 2 2 FAD binding domain Pyr_redox PF00070.22 gi|433592916|ref|YP_007282412.1| - 2.4e-08 34.2 0.0 6.8e-05 23.1 0.1 3.2 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.9 gi|433592916|ref|YP_007282412.1| - 2.9e-08 33.8 0.0 5.1e-06 26.5 0.0 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|433592916|ref|YP_007282412.1| - 3.2e-08 32.4 0.0 2.8e-05 22.7 0.2 2.1 2 0 0 2 2 2 2 HI0933-like protein FAD_oxidored PF12831.2 gi|433592916|ref|YP_007282412.1| - 2.1e-06 27.0 0.1 3.4e-05 23.1 0.1 2.3 2 0 0 2 2 2 1 FAD dependent oxidoreductase Thi4 PF01946.12 gi|433592916|ref|YP_007282412.1| - 5.1e-05 22.4 0.2 7.7e-05 21.8 0.1 1.2 1 0 0 1 1 1 1 Thi4 family Pyr_redox_3 PF13738.1 gi|433592916|ref|YP_007282412.1| - 7.1e-05 22.9 0.0 0.0008 19.5 0.0 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|433592916|ref|YP_007282412.1| - 7.7e-05 21.9 0.1 0.00043 19.4 0.1 2.0 2 0 0 2 2 2 1 FAD binding domain GIDA PF01134.17 gi|433592916|ref|YP_007282412.1| - 0.0063 15.4 0.3 0.013 14.3 0.2 1.5 2 0 0 2 2 2 1 Glucose inhibited division protein A NAD_binding_9 PF13454.1 gi|433592916|ref|YP_007282412.1| - 0.011 15.4 0.0 0.41 10.4 0.0 2.5 2 0 0 2 2 2 0 FAD-NAD(P)-binding 3HCDH_N PF02737.13 gi|433592916|ref|YP_007282412.1| - 0.029 14.0 0.1 0.051 13.2 0.0 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FMO-like PF00743.14 gi|433592916|ref|YP_007282412.1| - 0.03 12.5 0.0 0.039 12.1 0.0 1.1 1 0 0 1 1 1 0 Flavin-binding monooxygenase-like NAD_Gly3P_dh_N PF01210.18 gi|433592916|ref|YP_007282412.1| - 0.22 11.2 0.2 0.62 9.7 0.0 1.8 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus TPR_1 PF00515.23 gi|433592917|ref|YP_007282413.1| - 7.6e-21 72.7 7.3 4.7e-06 25.9 0.0 5.2 5 0 0 5 5 5 5 Tetratricopeptide repeat TPR_11 PF13414.1 gi|433592917|ref|YP_007282413.1| - 4.6e-20 71.0 18.3 1.1e-10 41.0 0.7 3.4 2 1 2 4 4 4 4 TPR repeat TPR_2 PF07719.12 gi|433592917|ref|YP_007282413.1| - 5.9e-17 60.1 17.0 4e-05 23.2 0.1 5.2 5 0 0 5 5 5 5 Tetratricopeptide repeat TPR_12 PF13424.1 gi|433592917|ref|YP_007282413.1| - 3.7e-15 55.6 18.4 9.4e-08 31.8 2.4 3.7 1 1 2 3 3 3 3 Tetratricopeptide repeat TPR_8 PF13181.1 gi|433592917|ref|YP_007282413.1| - 6e-14 50.6 6.5 0.0042 16.7 0.3 4.8 5 0 0 5 5 5 4 Tetratricopeptide repeat TPR_16 PF13432.1 gi|433592917|ref|YP_007282413.1| - 6.4e-14 52.1 15.7 2.3e-07 31.3 2.0 3.2 2 1 1 3 3 3 3 Tetratricopeptide repeat TPR_7 PF13176.1 gi|433592917|ref|YP_007282413.1| - 4.7e-10 38.4 14.8 0.00015 21.3 0.1 4.6 4 0 0 4 4 4 4 Tetratricopeptide repeat TPR_17 PF13431.1 gi|433592917|ref|YP_007282413.1| - 1.7e-09 37.1 0.8 0.032 14.4 0.0 4.5 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_14 PF13428.1 gi|433592917|ref|YP_007282413.1| - 7.3e-09 35.4 16.9 0.0032 17.9 0.5 4.8 1 1 4 5 5 5 3 Tetratricopeptide repeat TPR_10 PF13374.1 gi|433592917|ref|YP_007282413.1| - 4.6e-07 29.5 20.2 0.031 14.2 0.3 4.7 5 0 0 5 5 5 4 Tetratricopeptide repeat Apc3 PF12895.2 gi|433592917|ref|YP_007282413.1| - 7e-06 26.0 2.9 0.012 15.7 1.1 2.4 1 1 2 3 3 3 3 Anaphase-promoting complex, cyclosome, subunit 3 TPR_9 PF13371.1 gi|433592917|ref|YP_007282413.1| - 7.2e-05 22.5 11.7 0.043 13.6 0.2 4.0 1 1 3 4 4 4 3 Tetratricopeptide repeat TPR_4 PF07721.9 gi|433592917|ref|YP_007282413.1| - 0.00023 21.2 11.9 0.15 12.5 0.3 4.8 5 0 0 5 5 4 2 Tetratricopeptide repeat TPR_19 PF14559.1 gi|433592917|ref|YP_007282413.1| - 0.00042 20.5 10.8 0.21 11.9 0.6 3.6 1 1 3 4 4 4 4 Tetratricopeptide repeat NARP1 PF12569.3 gi|433592917|ref|YP_007282413.1| - 0.00078 18.3 0.5 0.0016 17.3 0.1 1.7 1 1 0 1 1 1 1 NMDA receptor-regulated protein 1 Apc5 PF12862.2 gi|433592917|ref|YP_007282413.1| - 0.0011 18.7 6.1 0.07 12.9 1.0 3.2 1 1 2 3 3 3 1 Anaphase-promoting complex subunit 5 TPR_6 PF13174.1 gi|433592917|ref|YP_007282413.1| - 0.0033 17.7 5.6 14 6.4 0.0 4.3 4 0 0 4 4 4 0 Tetratricopeptide repeat Mad3_BUB1_I PF08311.7 gi|433592917|ref|YP_007282413.1| - 0.038 13.7 0.9 5.8 6.7 0.0 2.3 1 1 1 2 2 2 0 Mad3/BUB1 homology region 1 Acetyltransf_11 PF13720.1 gi|433592917|ref|YP_007282413.1| - 0.062 13.5 0.3 0.17 12.1 0.2 1.7 1 0 0 1 1 1 0 Udp N-acetylglucosamine O-acyltransferase; Domain 2 DUF349 PF03993.7 gi|433592917|ref|YP_007282413.1| - 5.6 7.2 15.9 0.52 10.5 2.7 2.5 2 0 0 2 2 2 0 Domain of Unknown Function (DUF349) DUF424 PF04242.8 gi|433592918|ref|YP_007282414.1| - 1e-30 105.5 0.3 1.1e-30 105.4 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF424) ABC2_membrane_2 PF12679.2 gi|433592919|ref|YP_007282415.1| - 1e-40 139.3 6.5 1.5e-40 138.8 4.5 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|433592919|ref|YP_007282415.1| - 6.5e-20 71.2 13.4 9.5e-20 70.7 9.3 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|433592919|ref|YP_007282415.1| - 2.1e-07 30.3 10.3 2.1e-07 30.3 7.1 1.8 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|433592919|ref|YP_007282415.1| - 0.00062 18.9 8.4 0.0012 18.0 5.8 1.4 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_5 PF13346.1 gi|433592919|ref|YP_007282415.1| - 0.0011 18.3 5.2 0.0011 18.3 3.6 2.1 2 1 0 3 3 3 1 ABC-2 family transporter protein DUF4190 PF13828.1 gi|433592919|ref|YP_007282415.1| - 0.22 11.1 0.2 0.22 11.1 0.1 4.5 4 1 0 4 4 4 0 Domain of unknown function (DUF4190) ABC_tran PF00005.22 gi|433592920|ref|YP_007282416.1| - 1.5e-22 80.3 0.0 2.5e-22 79.6 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|433592920|ref|YP_007282416.1| - 6.3e-12 46.0 0.0 2e-07 31.3 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|433592920|ref|YP_007282416.1| - 0.0055 16.2 0.0 0.01 15.3 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain MMR_HSR1 PF01926.18 gi|433592920|ref|YP_007282416.1| - 0.0093 15.9 0.2 0.11 12.4 0.1 2.5 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_23 PF13476.1 gi|433592920|ref|YP_007282416.1| - 0.012 15.9 0.1 0.019 15.3 0.0 1.2 1 0 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|433592920|ref|YP_007282416.1| - 0.014 14.5 0.0 0.024 13.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_16 PF13191.1 gi|433592920|ref|YP_007282416.1| - 0.036 14.0 0.0 0.082 12.8 0.0 1.7 1 0 0 1 1 1 0 AAA ATPase domain AAA_22 PF13401.1 gi|433592920|ref|YP_007282416.1| - 0.042 13.9 0.0 0.21 11.7 0.0 2.1 2 1 0 2 2 2 0 AAA domain ACT PF01842.20 gi|433592920|ref|YP_007282416.1| - 0.043 13.2 0.7 0.18 11.3 0.3 2.1 2 0 0 2 2 2 0 ACT domain HTH_20 PF12840.2 gi|433592921|ref|YP_007282417.1| - 1.9e-06 27.5 0.1 2.7e-06 27.0 0.1 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|433592921|ref|YP_007282417.1| - 3.9e-06 26.1 0.0 7e-06 25.3 0.0 1.5 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|433592921|ref|YP_007282417.1| - 0.0003 20.3 0.0 0.00048 19.7 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|433592921|ref|YP_007282417.1| - 0.00087 18.8 0.0 0.0015 18.1 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.14 gi|433592921|ref|YP_007282417.1| - 0.0013 18.4 0.0 0.0021 17.7 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|433592921|ref|YP_007282417.1| - 0.0021 17.7 0.0 0.0039 16.8 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.7 gi|433592921|ref|YP_007282417.1| - 0.0039 16.8 0.0 0.0058 16.2 0.0 1.2 1 0 0 1 1 1 1 HTH domain Fe_dep_repress PF01325.14 gi|433592921|ref|YP_007282417.1| - 0.0065 16.3 0.0 0.011 15.6 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain TetR_N PF00440.18 gi|433592921|ref|YP_007282417.1| - 0.0073 15.9 0.0 0.013 15.1 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family HTH_29 PF13551.1 gi|433592921|ref|YP_007282417.1| - 0.012 15.8 0.0 0.02 15.0 0.0 1.4 1 1 0 1 1 1 0 Winged helix-turn helix HTH_AsnC-type PF13404.1 gi|433592921|ref|YP_007282417.1| - 0.016 14.7 1.1 0.046 13.2 0.7 1.9 1 1 0 1 1 1 0 AsnC-type helix-turn-helix domain PadR PF03551.9 gi|433592921|ref|YP_007282417.1| - 0.017 14.8 0.0 0.025 14.3 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family HTH_DeoR PF08220.7 gi|433592921|ref|YP_007282417.1| - 0.019 14.4 0.0 0.033 13.7 0.0 1.3 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_5 PF01022.15 gi|433592921|ref|YP_007282417.1| - 0.021 14.4 0.0 0.03 13.9 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_27 PF13463.1 gi|433592921|ref|YP_007282417.1| - 0.037 14.3 0.0 0.06 13.6 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF479 PF04336.7 gi|433592921|ref|YP_007282417.1| - 0.039 14.0 0.0 0.043 13.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF479 Ribonuc_red_lgN PF00317.16 gi|433592921|ref|YP_007282417.1| - 0.044 13.5 0.2 0.077 12.8 0.1 1.5 1 1 0 1 1 1 0 Ribonucleotide reductase, all-alpha domain HTH_23 PF13384.1 gi|433592921|ref|YP_007282417.1| - 0.064 12.9 0.0 0.11 12.1 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain Sulfolobus_pRN PF05584.6 gi|433592921|ref|YP_007282417.1| - 0.14 12.1 0.0 0.2 11.6 0.0 1.3 1 0 0 1 1 1 0 Sulfolobus plasmid regulatory protein Polysacc_synt_C PF14667.1 gi|433592922|ref|YP_007282418.1| - 0.0023 17.7 5.8 0.0028 17.4 4.0 1.1 1 0 0 1 1 1 1 Polysaccharide biosynthesis C-terminal domain Acyl_transf_3 PF01757.17 gi|433592922|ref|YP_007282418.1| - 0.016 14.0 1.1 0.017 13.9 0.8 1.1 1 0 0 1 1 1 0 Acyltransferase family SNARE_assoc PF09335.6 gi|433592922|ref|YP_007282418.1| - 0.042 14.0 7.2 0.11 12.7 5.0 1.6 1 1 0 1 1 1 0 SNARE associated Golgi protein DUF3262 PF11660.3 gi|433592922|ref|YP_007282418.1| - 0.076 13.1 0.6 0.076 13.1 0.4 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3262) MLANA PF14991.1 gi|433592922|ref|YP_007282418.1| - 0.14 12.1 0.2 0.21 11.5 0.1 1.4 1 1 0 1 1 1 0 Protein melan-A DUF1282 PF06930.7 gi|433592922|ref|YP_007282418.1| - 0.36 10.4 3.4 0.41 10.2 2.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1282) DUF939 PF06081.6 gi|433592922|ref|YP_007282418.1| - 1.4 8.8 5.5 0.43 10.4 1.0 1.8 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF939) DUF805 PF05656.9 gi|433592922|ref|YP_007282418.1| - 1.7 8.4 4.6 0.96 9.2 1.3 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF805) TraS PF10624.4 gi|433592923|ref|YP_007282419.1| - 0.0025 17.3 0.2 0.0036 16.8 0.1 1.2 1 0 0 1 1 1 1 Plasmid conjugative transfer entry exclusion protein TraS DUF202 PF02656.10 gi|433592923|ref|YP_007282419.1| - 0.048 13.8 3.1 4.8 7.4 0.3 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF202) Sensor PF13796.1 gi|433592924|ref|YP_007282420.1| - 2.1e-24 86.1 30.8 2.5e-19 69.5 14.7 2.9 1 1 1 2 2 2 2 Putative sensor Glyco_trans_2_3 PF13632.1 gi|433592924|ref|YP_007282420.1| - 5.2 6.7 10.7 0.077 12.6 0.5 2.5 3 0 0 3 3 3 0 Glycosyl transferase family group 2 Aminotran_5 PF00266.14 gi|433592925|ref|YP_007282421.1| - 9e-153 508.3 0.0 1e-152 508.2 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.12 gi|433592925|ref|YP_007282421.1| - 5.8e-10 38.7 1.4 9.3e-10 38.0 1.0 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.15 gi|433592925|ref|YP_007282421.1| - 0.0015 16.9 0.1 0.0024 16.2 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme SelA PF03841.8 gi|433592925|ref|YP_007282421.1| - 0.0043 15.8 0.1 0.011 14.5 0.1 1.5 1 1 0 1 1 1 1 L-seryl-tRNA selenium transferase YPEB PF14620.1 gi|433592925|ref|YP_007282421.1| - 0.032 13.2 0.1 0.063 12.2 0.0 1.5 2 0 0 2 2 2 0 YpeB sporulation Pyridoxal_deC PF00282.14 gi|433592925|ref|YP_007282421.1| - 0.063 11.7 0.1 0.11 10.9 0.1 1.3 1 0 0 1 1 1 0 Pyridoxal-dependent decarboxylase conserved domain Response_reg PF00072.19 gi|433592926|ref|YP_007282422.1| - 2.2e-15 56.6 0.0 2.8e-15 56.3 0.0 1.1 1 0 0 1 1 1 1 Response regulator receiver domain HD PF01966.17 gi|433592927|ref|YP_007282423.1| - 7.5e-14 51.7 3.0 1.3e-13 51.0 2.1 1.3 1 0 0 1 1 1 1 HD domain DUF4202 PF13875.1 gi|433592927|ref|YP_007282423.1| - 0.0021 17.7 0.1 0.022 14.3 0.1 2.2 1 1 0 1 1 1 1 Domain of unknown function (DUF4202) Fe-S_assembly PF04384.8 gi|433592927|ref|YP_007282423.1| - 0.097 13.0 0.0 1.1 9.6 0.0 2.2 2 0 0 2 2 2 0 Iron-sulphur cluster assembly NifU_N PF01592.11 gi|433592928|ref|YP_007282424.1| - 5.8e-28 97.3 0.1 6.7e-28 97.1 0.0 1.0 1 0 0 1 1 1 1 NifU-like N terminal domain IucA_IucC PF04183.7 gi|433592929|ref|YP_007282425.1| - 5.3e-69 232.2 0.0 7.3e-69 231.8 0.0 1.2 1 0 0 1 1 1 1 IucA / IucC family FhuF PF06276.7 gi|433592929|ref|YP_007282425.1| - 3.7e-38 131.0 0.3 6.7e-38 130.2 0.2 1.4 1 0 0 1 1 1 1 Ferric iron reductase FhuF-like transporter K_oxygenase PF13434.1 gi|433592930|ref|YP_007282426.1| - 1.2e-110 369.7 0.0 2e-110 368.9 0.0 1.4 1 1 0 1 1 1 1 L-lysine 6-monooxygenase (NADPH-requiring) Pyr_redox_3 PF13738.1 gi|433592930|ref|YP_007282426.1| - 2.3e-12 47.4 0.0 9.6e-12 45.3 0.0 1.8 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.1 gi|433592930|ref|YP_007282426.1| - 9.7e-05 22.1 0.1 0.022 14.5 0.0 3.4 4 0 0 4 4 4 1 FAD-NAD(P)-binding Pyr_redox_2 PF07992.9 gi|433592930|ref|YP_007282426.1| - 0.006 16.4 0.0 0.012 15.4 0.0 1.6 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Acetyltransf_8 PF13523.1 gi|433592931|ref|YP_007282427.1| - 2.7e-39 134.4 0.1 3.5e-39 134.1 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|433592931|ref|YP_007282427.1| - 8e-07 29.3 0.0 1.8e-06 28.2 0.0 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain IucA_IucC PF04183.7 gi|433592932|ref|YP_007282428.1| - 4.7e-69 232.4 0.0 6.3e-69 232.0 0.0 1.2 1 0 0 1 1 1 1 IucA / IucC family FhuF PF06276.7 gi|433592932|ref|YP_007282428.1| - 1.7e-33 115.8 0.1 2.7e-33 115.2 0.1 1.3 1 0 0 1 1 1 1 Ferric iron reductase FhuF-like transporter Pyridoxal_deC PF00282.14 gi|433592933|ref|YP_007282429.1| - 4.8e-64 216.1 0.0 5.7e-64 215.8 0.0 1.0 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain Beta_elim_lyase PF01212.16 gi|433592933|ref|YP_007282429.1| - 2.2e-05 23.7 0.0 5.2e-05 22.5 0.0 1.5 1 1 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.14 gi|433592933|ref|YP_007282429.1| - 0.059 12.1 0.0 0.12 11.1 0.0 1.4 1 0 0 1 1 1 0 Aminotransferase class-V Aminotran_3 PF00202.16 gi|433592934|ref|YP_007282430.1| - 1.4e-91 306.8 0.0 1.7e-91 306.6 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Rad51 PF08423.6 gi|433592935|ref|YP_007282431.1| - 1.1e-79 266.9 0.1 1.8e-76 256.4 0.1 2.0 1 1 0 1 1 1 1 Rad51 HHH_5 PF14520.1 gi|433592935|ref|YP_007282431.1| - 8.3e-12 45.1 0.1 3.1e-11 43.2 0.0 2.0 2 0 0 2 2 2 1 Helix-hairpin-helix domain AAA_25 PF13481.1 gi|433592935|ref|YP_007282431.1| - 1.8e-10 40.5 0.2 2.9e-10 39.8 0.1 1.3 1 0 0 1 1 1 1 AAA domain HHH PF00633.18 gi|433592935|ref|YP_007282431.1| - 5e-08 32.2 0.1 0.00027 20.4 0.0 2.7 2 0 0 2 2 2 2 Helix-hairpin-helix motif RecA PF00154.16 gi|433592935|ref|YP_007282431.1| - 5.9e-07 28.8 0.0 0.02 13.9 0.0 2.1 1 1 0 2 2 2 2 recA bacterial DNA recombination protein HHH_2 PF12826.2 gi|433592935|ref|YP_007282431.1| - 2.5e-06 27.2 0.1 1.2e-05 25.1 0.0 2.1 2 0 0 2 2 2 1 Helix-hairpin-helix motif Cdd1 PF11731.3 gi|433592935|ref|YP_007282431.1| - 0.00011 22.0 0.0 0.00035 20.4 0.0 1.9 2 0 0 2 2 2 1 Pathogenicity locus KaiC PF06745.8 gi|433592935|ref|YP_007282431.1| - 0.0003 19.9 0.1 0.0017 17.5 0.0 2.0 2 0 0 2 2 2 1 KaiC DNA_pol_lambd_f PF10391.4 gi|433592935|ref|YP_007282431.1| - 0.001 18.5 0.0 0.0041 16.6 0.0 2.1 1 1 0 1 1 1 1 Fingers domain of DNA polymerase lambda IMS_HHH PF11798.3 gi|433592935|ref|YP_007282431.1| - 0.0027 17.6 0.0 0.014 15.3 0.0 2.2 2 0 0 2 2 2 1 IMS family HHH motif DUF4332 PF14229.1 gi|433592935|ref|YP_007282431.1| - 0.0031 17.4 0.0 0.0078 16.1 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4332) AAA_22 PF13401.1 gi|433592935|ref|YP_007282431.1| - 0.021 14.9 0.4 0.14 12.3 0.3 2.2 1 1 0 1 1 1 0 AAA domain Arch_ATPase PF01637.13 gi|433592935|ref|YP_007282431.1| - 0.1 12.2 0.0 0.14 11.7 0.0 1.3 1 0 0 1 1 1 0 Archaeal ATPase PQQ_2 PF13360.1 gi|433592936|ref|YP_007282432.1| - 1.4e-44 152.4 10.2 1.9e-20 73.3 1.0 4.0 2 2 1 3 3 3 3 PQQ-like domain PQQ_3 PF13570.1 gi|433592936|ref|YP_007282432.1| - 3.4e-42 141.5 37.8 2.9e-08 33.7 0.7 8.8 9 0 0 9 9 9 8 PQQ-like domain PQQ PF01011.16 gi|433592936|ref|YP_007282432.1| - 1.4e-25 87.4 10.6 0.00029 20.1 0.0 6.7 6 0 0 6 6 6 6 PQQ enzyme repeat FIST PF08495.5 gi|433592937|ref|YP_007282433.1| - 0.018 14.1 0.1 0.027 13.6 0.1 1.2 1 0 0 1 1 1 0 FIST N domain Peptidase_M48 PF01435.13 gi|433592938|ref|YP_007282434.1| - 9.7e-41 139.7 0.0 1.6e-40 139.0 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.6 gi|433592938|ref|YP_007282434.1| - 1.7e-06 27.2 5.0 2.8e-06 26.5 0.0 2.5 3 0 0 3 3 3 1 BlaR1 peptidase M56 Peptidase_MA_2 PF13485.1 gi|433592938|ref|YP_007282434.1| - 0.038 14.0 0.0 0.078 13.0 0.0 1.5 1 0 0 1 1 1 0 Peptidase MA superfamily SprT-like PF10263.4 gi|433592938|ref|YP_007282434.1| - 0.046 13.3 0.0 0.069 12.7 0.0 1.2 1 0 0 1 1 1 0 SprT-like family Creatininase PF02633.9 gi|433592939|ref|YP_007282435.1| - 1.1e-66 224.2 1.1 1.3e-66 224.0 0.7 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase ETF PF01012.16 gi|433592939|ref|YP_007282435.1| - 0.027 14.1 0.3 3.5 7.3 0.0 2.5 2 1 1 3 3 3 0 Electron transfer flavoprotein domain NMD3 PF04981.8 gi|433592940|ref|YP_007282436.1| - 5.7e-68 228.5 0.1 6.9e-68 228.2 0.1 1.1 1 0 0 1 1 1 1 NMD3 family zf-ribbon_3 PF13248.1 gi|433592940|ref|YP_007282436.1| - 0.00042 19.4 2.8 0.64 9.2 0.1 3.4 3 0 0 3 3 3 2 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|433592940|ref|YP_007282436.1| - 0.0026 17.1 2.5 1.9 8.0 0.3 3.4 3 0 0 3 3 3 1 zinc-ribbon domain GFA PF04828.9 gi|433592940|ref|YP_007282436.1| - 0.0074 16.2 3.4 2.9 7.8 0.1 3.4 2 1 0 3 3 3 2 Glutathione-dependent formaldehyde-activating enzyme DZR PF12773.2 gi|433592940|ref|YP_007282436.1| - 0.011 15.5 7.9 0.12 12.2 2.5 3.0 1 1 1 2 2 2 0 Double zinc ribbon FYVE PF01363.16 gi|433592940|ref|YP_007282436.1| - 0.018 14.8 0.5 0.47 10.3 0.2 2.4 2 0 0 2 2 2 0 FYVE zinc finger Rpr2 PF04032.11 gi|433592940|ref|YP_007282436.1| - 0.02 14.7 0.0 2.2 8.2 0.0 3.2 3 0 0 3 3 3 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain Nudix_N_2 PF14803.1 gi|433592940|ref|YP_007282436.1| - 0.14 11.8 13.7 3.2 7.5 2.3 3.7 3 1 0 3 3 3 0 Nudix N-terminal zf-dskA_traR PF01258.12 gi|433592940|ref|YP_007282436.1| - 0.15 11.8 0.2 0.15 11.8 0.1 3.3 4 0 0 4 4 4 0 Prokaryotic dksA/traR C4-type zinc finger zf-NADH-PPase PF09297.6 gi|433592940|ref|YP_007282436.1| - 4.2 6.9 12.1 0.97 8.9 0.5 2.9 3 0 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain Zn-ribbon_8 PF09723.5 gi|433592940|ref|YP_007282436.1| - 4.7 7.2 7.7 29 4.7 0.2 3.2 3 0 0 3 3 3 0 Zinc ribbon domain zf-tcix PF14952.1 gi|433592940|ref|YP_007282436.1| - 7.9 5.9 7.3 8.2 5.8 0.1 3.1 3 0 0 3 3 3 0 Putative treble-clef, zinc-finger, Zn-binding Met_10 PF02475.11 gi|433592941|ref|YP_007282437.1| - 1.1e-47 162.2 0.0 6.6e-46 156.4 0.0 2.1 2 0 0 2 2 2 1 Met-10+ like-protein Methyltransf_26 PF13659.1 gi|433592941|ref|YP_007282437.1| - 1.6e-08 34.5 2.1 2.3e-08 34.0 0.4 2.0 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|433592941|ref|YP_007282437.1| - 1.6e-08 35.0 0.1 4.8e-08 33.5 0.1 1.8 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_15 PF09445.5 gi|433592941|ref|YP_007282437.1| - 6.6e-06 25.7 0.0 9.7e-06 25.2 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase MTS PF05175.9 gi|433592941|ref|YP_007282437.1| - 4.6e-05 22.8 0.0 0.00013 21.3 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase small domain tRNA_U5-meth_tr PF05958.6 gi|433592941|ref|YP_007282437.1| - 0.0011 17.7 0.0 0.0016 17.1 0.0 1.1 1 0 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase DNA_methylase PF00145.12 gi|433592941|ref|YP_007282437.1| - 0.016 14.3 0.0 0.021 13.9 0.0 1.1 1 0 0 1 1 1 0 C-5 cytosine-specific DNA methylase PrmA PF06325.8 gi|433592941|ref|YP_007282437.1| - 0.021 13.9 0.0 0.035 13.2 0.0 1.3 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_21 PF05050.7 gi|433592941|ref|YP_007282437.1| - 0.11 12.4 0.0 0.23 11.3 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase FkbM domain Methyltransf_23 PF13489.1 gi|433592941|ref|YP_007282437.1| - 0.12 12.1 0.0 0.51 10.0 0.0 2.2 2 1 0 2 2 2 0 Methyltransferase domain RrnaAD PF00398.15 gi|433592941|ref|YP_007282437.1| - 0.14 11.1 0.0 0.2 10.6 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Methyltransf_31 PF13847.1 gi|433592941|ref|YP_007282437.1| - 0.17 11.4 0.0 0.25 10.9 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Helicase_C_2 PF13307.1 gi|433592942|ref|YP_007282438.1| - 3.3e-20 72.6 0.0 4.9e-20 72.1 0.0 1.3 1 0 0 1 1 1 1 Helicase C-terminal domain DEAD_2 PF06733.10 gi|433592942|ref|YP_007282438.1| - 3.4e-07 29.8 0.0 5.1e-07 29.2 0.0 1.2 1 0 0 1 1 1 1 DEAD_2 ResIII PF04851.10 gi|433592942|ref|YP_007282438.1| - 4.1e-05 23.4 0.0 0.0098 15.7 0.0 2.3 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit AAA_19 PF13245.1 gi|433592942|ref|YP_007282438.1| - 5.8e-05 22.7 0.3 0.00015 21.4 0.2 1.7 1 0 0 1 1 1 1 Part of AAA domain DEAD PF00270.24 gi|433592942|ref|YP_007282438.1| - 0.0002 20.8 0.0 0.19 11.1 0.0 2.3 2 0 0 2 2 2 2 DEAD/DEAH box helicase AAA_30 PF13604.1 gi|433592942|ref|YP_007282438.1| - 0.00023 20.8 0.9 0.22 11.0 0.1 2.3 2 0 0 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|433592942|ref|YP_007282438.1| - 0.00088 19.4 0.0 0.0047 17.0 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|433592942|ref|YP_007282438.1| - 0.0017 18.3 0.1 0.0059 16.6 0.1 2.1 1 1 0 1 1 1 1 AAA ATPase domain DXP_redisom_C PF08436.7 gi|433592942|ref|YP_007282438.1| - 0.019 14.8 0.0 0.045 13.6 0.0 1.6 1 0 0 1 1 1 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal AAA_10 PF12846.2 gi|433592942|ref|YP_007282438.1| - 0.021 14.2 0.1 2.1 7.6 0.0 2.4 2 0 0 2 2 2 0 AAA-like domain PhoH PF02562.11 gi|433592942|ref|YP_007282438.1| - 0.082 12.1 0.0 0.16 11.1 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein Mg_chelatase PF01078.16 gi|433592942|ref|YP_007282438.1| - 0.1 11.7 0.0 0.17 11.0 0.0 1.2 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI DUF2075 PF09848.4 gi|433592942|ref|YP_007282438.1| - 0.16 10.8 0.0 1.8 7.4 0.0 2.1 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) CxxCxxCC PF03692.10 gi|433592944|ref|YP_007282440.1| - 3.6e-05 24.1 1.3 0.017 15.5 0.0 2.3 2 0 0 2 2 2 2 Putative zinc- or iron-chelating domain DDE_Tnp_IS240 PF13610.1 gi|433592946|ref|YP_007282442.1| - 2.6e-15 56.6 0.1 3.3e-15 56.2 0.1 1.1 1 0 0 1 1 1 1 DDE domain DDE_Tnp_IS66 PF03050.9 gi|433592946|ref|YP_007282442.1| - 3e-07 29.9 0.1 6.2e-07 28.9 0.1 1.6 1 1 0 1 1 1 1 Transposase IS66 family DDE_3 PF13358.1 gi|433592946|ref|YP_007282442.1| - 0.0038 16.9 0.0 0.017 14.9 0.0 1.9 1 1 0 1 1 1 1 DDE superfamily endonuclease HTH_28 PF13518.1 gi|433592946|ref|YP_007282442.1| - 0.0088 16.0 0.0 0.19 11.7 0.0 2.5 2 0 0 2 2 2 1 Helix-turn-helix domain DDE_Tnp_1 PF01609.16 gi|433592946|ref|YP_007282442.1| - 0.013 15.0 3.5 1.2 8.6 2.4 2.2 1 1 0 1 1 1 0 Transposase DDE domain FSA_C PF10479.4 gi|433592946|ref|YP_007282442.1| - 0.02 13.0 0.0 0.028 12.5 0.0 1.2 1 0 0 1 1 1 0 Fragile site-associated protein C-terminus rve PF00665.21 gi|433592946|ref|YP_007282442.1| - 0.025 14.6 0.1 0.066 13.3 0.0 1.7 2 0 0 2 2 2 0 Integrase core domain ADH_N PF08240.7 gi|433592947|ref|YP_007282443.1| - 4e-27 94.1 0.9 7.1e-27 93.3 0.6 1.4 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|433592947|ref|YP_007282443.1| - 2e-23 82.3 0.3 3.2e-23 81.7 0.2 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase AlaDh_PNT_C PF01262.16 gi|433592947|ref|YP_007282443.1| - 1.5e-05 24.6 0.3 3.7e-05 23.3 0.2 1.6 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain ELFV_dehydrog PF00208.16 gi|433592947|ref|YP_007282443.1| - 0.011 15.2 0.3 0.017 14.7 0.2 1.3 1 0 0 1 1 1 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 2-Hacid_dh_C PF02826.14 gi|433592947|ref|YP_007282443.1| - 0.013 14.6 0.0 0.023 13.8 0.0 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GCV_H PF01597.14 gi|433592947|ref|YP_007282443.1| - 0.031 13.9 0.2 0.081 12.6 0.1 1.7 1 0 0 1 1 1 0 Glycine cleavage H-protein Methyltransf_18 PF12847.2 gi|433592947|ref|YP_007282443.1| - 0.058 13.9 0.1 0.15 12.6 0.1 1.7 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_11 PF08241.7 gi|433592947|ref|YP_007282443.1| - 0.064 13.7 0.1 0.17 12.4 0.0 1.7 1 0 0 1 1 1 0 Methyltransferase domain TrkA_N PF02254.13 gi|433592947|ref|YP_007282443.1| - 0.093 12.7 0.2 0.19 11.7 0.2 1.5 1 0 0 1 1 1 0 TrkA-N domain PHP PF02811.14 gi|433592949|ref|YP_007282445.1| - 1.1e-11 44.8 0.0 1.5e-11 44.4 0.0 1.2 1 1 0 1 1 1 1 PHP domain PHP_C PF13263.1 gi|433592949|ref|YP_007282445.1| - 0.0016 17.8 0.2 0.0049 16.3 0.0 1.8 2 0 0 2 2 2 1 PHP-associated Fer4_7 PF12838.2 gi|433592951|ref|YP_007282447.1| - 1.8e-12 47.4 26.0 1.1e-07 32.0 6.3 2.0 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4 PF00037.22 gi|433592951|ref|YP_007282447.1| - 2.5e-12 45.8 16.8 5.2e-07 28.9 3.8 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|433592951|ref|YP_007282447.1| - 2.5e-11 43.6 7.2 3.7e-11 43.0 5.0 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|433592951|ref|YP_007282447.1| - 9.5e-09 34.7 17.7 1e-05 25.1 4.2 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|433592951|ref|YP_007282447.1| - 3.8e-08 33.2 3.1 0.0011 18.9 0.7 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|433592951|ref|YP_007282447.1| - 5.6e-08 32.4 19.9 9.8e-06 25.2 6.2 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|433592951|ref|YP_007282447.1| - 2.8e-07 30.2 8.6 5.2e-07 29.4 5.9 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|433592951|ref|YP_007282447.1| - 7.6e-07 29.4 3.6 0.00025 21.4 0.8 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|433592951|ref|YP_007282447.1| - 1e-06 28.2 12.6 0.0016 18.2 2.5 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|433592951|ref|YP_007282447.1| - 1.1e-06 28.8 0.8 0.038 14.3 0.3 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|433592951|ref|YP_007282447.1| - 1.1e-06 29.2 5.9 7.1e-05 23.4 0.8 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|433592951|ref|YP_007282447.1| - 3.6e-06 26.8 9.0 0.00028 20.9 2.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_3 PF12798.2 gi|433592951|ref|YP_007282447.1| - 0.00061 20.1 13.8 0.0025 18.2 3.6 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.1 gi|433592951|ref|YP_007282447.1| - 0.0012 19.1 16.1 0.011 16.1 11.2 2.5 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_15 PF13459.1 gi|433592951|ref|YP_007282447.1| - 0.011 16.3 17.7 0.17 12.5 12.1 2.6 1 1 0 1 1 1 0 4Fe-4S single cluster domain Aldedh PF00171.17 gi|433592952|ref|YP_007282448.1| - 2e-151 504.5 0.0 2.4e-151 504.2 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.9 gi|433592952|ref|YP_007282448.1| - 0.00016 20.5 0.0 0.00022 20.0 0.0 1.2 1 0 0 1 1 1 1 Acyl-CoA reductase (LuxC) ALAD PF00490.16 gi|433592953|ref|YP_007282449.1| - 1e-139 464.9 0.0 1.2e-139 464.7 0.0 1.0 1 0 0 1 1 1 1 Delta-aminolevulinic acid dehydratase Ammonium_transp PF00909.16 gi|433592954|ref|YP_007282450.1| - 3.8e-95 318.6 37.8 4.7e-95 318.4 26.2 1.1 1 0 0 1 1 1 1 Ammonium Transporter Family P-II PF00543.17 gi|433592954|ref|YP_007282450.1| - 2e-31 108.4 0.0 4.2e-31 107.4 0.0 1.6 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II PsbY PF06298.6 gi|433592954|ref|YP_007282450.1| - 0.24 10.9 6.0 0.55 9.8 0.2 2.7 2 0 0 2 2 2 0 Photosystem II protein Y (PsbY) bPH_2 PF03703.9 gi|433592955|ref|YP_007282451.1| - 1.5e-07 31.2 0.6 2.2e-07 30.8 0.4 1.3 1 0 0 1 1 1 1 Bacterial PH domain DUF2178 PF09946.4 gi|433592955|ref|YP_007282451.1| - 0.0018 17.9 0.2 0.0029 17.3 0.1 1.2 1 0 0 1 1 1 1 Predicted membrane protein (DUF2178) SecA_PP_bind PF01043.15 gi|433592955|ref|YP_007282451.1| - 0.15 12.4 0.2 0.23 11.8 0.1 1.3 1 0 0 1 1 1 0 SecA preprotein cross-linking domain Aminotran_3 PF00202.16 gi|433592956|ref|YP_007282452.1| - 1.9e-67 227.5 0.0 2.5e-67 227.1 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-III DUF4232 PF14016.1 gi|433592957|ref|YP_007282453.1| - 0.038 13.6 0.6 2 8.0 0.1 2.1 1 1 0 2 2 2 0 Protein of unknown function (DUF4232) TAT_signal PF10518.4 gi|433592957|ref|YP_007282453.1| - 8.8 6.6 7.1 2.1 8.5 2.5 1.9 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence COX1 PF00115.15 gi|433592958|ref|YP_007282454.1| - 8e-45 153.2 45.9 1.8e-44 152.1 31.8 1.6 1 0 0 1 1 1 1 Cytochrome C and Quinol oxidase polypeptide I Bac_globin PF01152.16 gi|433592959|ref|YP_007282455.1| - 7.2e-28 97.0 0.0 7.9e-28 96.8 0.0 1.0 1 0 0 1 1 1 1 Bacterial-like globin Protoglobin PF11563.3 gi|433592959|ref|YP_007282455.1| - 7.9e-05 22.3 0.1 0.00022 20.9 0.0 1.8 1 1 0 1 1 1 1 Protoglobin Porphobil_deam PF01379.15 gi|433592960|ref|YP_007282456.1| - 1.5e-62 210.3 0.0 3.2e-51 173.2 0.0 2.1 2 0 0 2 2 2 2 Porphobilinogen deaminase, dipyromethane cofactor binding domain Porphobil_deamC PF03900.10 gi|433592960|ref|YP_007282456.1| - 1.1e-08 35.0 0.0 3.1e-08 33.6 0.0 1.8 1 0 0 1 1 1 1 Porphobilinogen deaminase, C-terminal domain TP_methylase PF00590.15 gi|433592961|ref|YP_007282457.1| - 8.3e-57 192.2 0.8 9.9e-57 192.0 0.5 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases HEM4 PF02602.10 gi|433592962|ref|YP_007282458.1| - 1.3e-43 148.9 5.7 1.5e-43 148.7 3.9 1.0 1 0 0 1 1 1 1 Uroporphyrinogen-III synthase HemD HHH_5 PF14520.1 gi|433592962|ref|YP_007282458.1| - 0.055 13.6 0.4 1.4 9.1 0.1 2.9 2 1 0 2 2 2 0 Helix-hairpin-helix domain PGA_cap PF09587.5 gi|433592963|ref|YP_007282459.1| - 6e-61 205.9 0.0 7.5e-61 205.6 0.0 1.1 1 0 0 1 1 1 1 Bacterial capsule synthesis protein PGA_cap DHHA1 PF02272.14 gi|433592964|ref|YP_007282460.1| - 7e-14 51.2 1.2 2e-13 49.8 0.9 1.8 1 0 0 1 1 1 1 DHHA1 domain DHH PF01368.15 gi|433592964|ref|YP_007282460.1| - 1.1e-11 44.6 0.0 1.5e-11 44.1 0.0 1.3 1 0 0 1 1 1 1 DHH family PHP_C PF13263.1 gi|433592965|ref|YP_007282461.1| - 5.1e-22 77.1 0.1 2.6e-21 74.8 0.1 2.0 2 0 0 2 2 2 1 PHP-associated PHP PF02811.14 gi|433592965|ref|YP_007282461.1| - 1.3e-14 54.4 0.0 5.8e-14 52.2 0.0 1.9 1 1 0 1 1 1 1 PHP domain XhlA PF10779.4 gi|433592967|ref|YP_007282463.1| - 2.1 8.3 6.6 0.19 11.6 0.7 1.9 2 0 0 2 2 2 0 Haemolysin XhlA EST1 PF10374.4 gi|433592969|ref|YP_007282465.1| - 0.037 14.0 0.1 0.053 13.5 0.0 1.2 1 0 0 1 1 1 0 Telomerase activating protein Est1 Prok_Ub PF14454.1 gi|433592969|ref|YP_007282465.1| - 0.14 11.8 0.9 0.39 10.4 0.1 2.0 2 0 0 2 2 2 0 Prokaryotic Ubiquitin NifU PF01106.12 gi|433592970|ref|YP_007282466.1| - 1.1e-10 41.1 0.1 1.1e-10 41.1 0.1 1.6 2 1 0 2 2 2 1 NifU-like domain ApbA_C PF08546.6 gi|433592971|ref|YP_007282467.1| - 1.1e-38 132.0 0.8 1.7e-38 131.4 0.5 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA C terminal ApbA PF02558.11 gi|433592971|ref|YP_007282467.1| - 1.8e-30 105.3 0.1 2.7e-30 104.7 0.1 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA TrkA_N PF02254.13 gi|433592971|ref|YP_007282467.1| - 0.094 12.7 1.4 0.83 9.6 0.0 2.9 3 1 0 3 3 3 0 TrkA-N domain HypA PF01155.14 gi|433592972|ref|YP_007282468.1| - 0.00038 20.1 0.1 0.00049 19.7 0.1 1.3 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family Rubredoxin PF00301.15 gi|433592972|ref|YP_007282468.1| - 0.014 15.2 0.2 4.2 7.3 0.1 2.5 2 0 0 2 2 2 0 Rubredoxin Zn-ribbon_8 PF09723.5 gi|433592972|ref|YP_007282468.1| - 0.016 15.1 1.0 0.03 14.2 0.7 1.5 1 0 0 1 1 1 0 Zinc ribbon domain TF_Zn_Ribbon PF08271.7 gi|433592972|ref|YP_007282468.1| - 0.018 14.3 1.0 1.6 8.0 0.0 2.5 2 0 0 2 2 2 0 TFIIB zinc-binding DNA_RNApol_7kD PF03604.8 gi|433592972|ref|YP_007282468.1| - 0.036 13.5 1.5 0.054 12.9 1.0 1.3 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit Abhydrolase_6 PF12697.2 gi|433592974|ref|YP_007282470.1| - 8e-42 143.6 2.1 9.7e-42 143.3 1.5 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|433592974|ref|YP_007282470.1| - 4.7e-24 84.8 0.1 6.4e-23 81.1 0.1 2.0 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|433592974|ref|YP_007282470.1| - 1.9e-22 79.9 0.0 2.5e-22 79.5 0.0 1.1 1 0 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_4 PF08386.5 gi|433592974|ref|YP_007282470.1| - 3.1e-06 27.0 0.0 5.4e-06 26.2 0.0 1.3 1 0 0 1 1 1 1 TAP-like protein Abhydrolase_2 PF02230.11 gi|433592974|ref|YP_007282470.1| - 7.3e-06 25.5 0.0 0.079 12.3 0.0 3.0 2 1 1 3 3 3 2 Phospholipase/Carboxylesterase Ndr PF03096.9 gi|433592974|ref|YP_007282470.1| - 6.5e-05 21.5 0.0 0.00013 20.5 0.0 1.5 1 1 0 1 1 1 1 Ndr family FSH1 PF03959.8 gi|433592974|ref|YP_007282470.1| - 0.0024 17.3 0.0 0.0051 16.2 0.0 1.4 1 1 0 1 1 1 1 Serine hydrolase (FSH1) Hydrolase_4 PF12146.3 gi|433592974|ref|YP_007282470.1| - 0.003 17.3 0.1 0.0066 16.2 0.1 1.6 1 0 0 1 1 1 1 Putative lysophospholipase Thioesterase PF00975.15 gi|433592974|ref|YP_007282470.1| - 0.0073 16.5 0.0 0.01 16.0 0.0 1.3 1 1 0 1 1 1 1 Thioesterase domain Esterase PF00756.15 gi|433592974|ref|YP_007282470.1| - 0.011 15.2 0.3 0.028 13.8 0.2 1.7 1 1 0 1 1 1 0 Putative esterase Peptidase_S9 PF00326.16 gi|433592974|ref|YP_007282470.1| - 0.018 14.2 0.0 0.24 10.6 0.0 2.3 2 0 0 2 2 2 0 Prolyl oligopeptidase family Abhydrolase_3 PF07859.8 gi|433592974|ref|YP_007282470.1| - 0.046 13.2 0.1 0.17 11.4 0.1 1.9 1 1 0 1 1 1 0 alpha/beta hydrolase fold Ser_hydrolase PF06821.8 gi|433592974|ref|YP_007282470.1| - 0.046 13.3 0.0 0.27 10.8 0.0 2.1 1 1 0 1 1 1 0 Serine hydrolase PolC_DP2 PF03833.8 gi|433592975|ref|YP_007282471.1| - 0 1293.6 1.8 0 1293.6 1.2 2.4 2 1 0 2 2 2 1 DNA polymerase II large subunit DP2 LAGLIDADG_3 PF14528.1 gi|433592975|ref|YP_007282471.1| - 7.1e-12 45.3 0.0 6.3e-11 42.3 0.0 2.6 3 0 0 3 3 3 1 LAGLIDADG-like domain Intein_splicing PF14890.1 gi|433592975|ref|YP_007282471.1| - 0.001 18.0 0.0 0.43 9.4 0.0 2.4 2 0 0 2 2 2 2 Intein splicing domain Phage_CI_repr PF07022.8 gi|433592975|ref|YP_007282471.1| - 0.075 13.1 0.0 0.28 11.3 0.0 1.9 1 0 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain Hint PF01079.15 gi|433592975|ref|YP_007282471.1| - 0.11 11.7 0.0 0.21 10.7 0.0 1.4 1 0 0 1 1 1 0 Hint module DZR PF12773.2 gi|433592975|ref|YP_007282471.1| - 0.86 9.4 21.4 12 5.7 9.2 3.4 2 1 1 3 3 3 0 Double zinc ribbon zinc-ribbons_6 PF07191.7 gi|433592975|ref|YP_007282471.1| - 1.2 8.9 15.2 1.3 8.8 2.2 3.3 3 0 0 3 3 3 0 zinc-ribbons zf-HIT PF04438.11 gi|433592975|ref|YP_007282471.1| - 2.7 7.7 9.3 3.7 7.2 2.2 2.7 2 0 0 2 2 2 0 HIT zinc finger Sigma70_ner PF04546.8 gi|433592975|ref|YP_007282471.1| - 7.2 6.1 8.1 18 4.8 5.6 1.6 1 0 0 1 1 1 0 Sigma-70, non-essential region DUF296 PF03479.10 gi|433592976|ref|YP_007282472.1| - 1.4e-24 85.9 0.0 1.6e-24 85.7 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF296) SBP_bac_5 PF00496.17 gi|433592977|ref|YP_007282473.1| - 6.4e-67 225.9 1.5 7.7e-67 225.7 1.1 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle K_channel_TID PF07941.6 gi|433592977|ref|YP_007282473.1| - 0.025 14.7 0.7 0.056 13.6 0.5 1.5 1 0 0 1 1 1 0 Potassium channel Kv1.4 tandem inactivation domain TAT_signal PF10518.4 gi|433592977|ref|YP_007282473.1| - 0.08 12.9 6.5 0.15 12.1 4.5 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence DUF2827 PF10933.3 gi|433592977|ref|YP_007282473.1| - 0.092 11.1 0.2 0.15 10.5 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2827) BPD_transp_1 PF00528.17 gi|433592978|ref|YP_007282474.1| - 1.5e-40 138.6 7.6 1.5e-40 138.6 5.2 1.9 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component HTH_23 PF13384.1 gi|433592978|ref|YP_007282474.1| - 0.018 14.6 0.1 0.69 9.6 0.1 2.5 2 0 0 2 2 2 0 Homeodomain-like domain BPD_transp_1 PF00528.17 gi|433592979|ref|YP_007282475.1| - 1e-31 109.8 9.6 1e-31 109.8 6.7 2.0 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.22 gi|433592980|ref|YP_007282476.1| - 1.2e-26 93.6 0.0 1.9e-26 92.9 0.0 1.4 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|433592980|ref|YP_007282476.1| - 2.1e-20 72.8 0.7 4.1e-20 71.8 0.5 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|433592980|ref|YP_007282476.1| - 1e-06 28.9 0.0 7e-06 26.2 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|433592980|ref|YP_007282476.1| - 0.066 12.6 0.5 0.14 11.5 0.3 1.6 1 1 0 1 1 1 0 AAA-like domain DUF258 PF03193.11 gi|433592980|ref|YP_007282476.1| - 0.076 12.2 0.0 0.14 11.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_25 PF13481.1 gi|433592980|ref|YP_007282476.1| - 0.092 12.1 0.3 0.26 10.6 0.1 1.8 2 1 0 2 2 2 0 AAA domain AAA_29 PF13555.1 gi|433592980|ref|YP_007282476.1| - 0.16 11.5 0.1 0.29 10.6 0.0 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain ABC_tran PF00005.22 gi|433592981|ref|YP_007282477.1| - 1.2e-32 113.0 0.0 1.8e-32 112.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|433592981|ref|YP_007282477.1| - 3.4e-17 62.5 0.2 9.5e-17 61.1 0.1 1.8 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|433592981|ref|YP_007282477.1| - 1.6e-05 25.0 0.0 0.078 12.9 0.0 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|433592981|ref|YP_007282477.1| - 8.8e-05 21.8 0.0 0.00012 21.3 0.0 1.1 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|433592981|ref|YP_007282477.1| - 0.0048 16.3 0.0 0.0085 15.6 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|433592981|ref|YP_007282477.1| - 0.005 16.8 0.1 0.0092 15.9 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain DUF258 PF03193.11 gi|433592981|ref|YP_007282477.1| - 0.017 14.3 0.0 0.027 13.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA PF00004.24 gi|433592981|ref|YP_007282477.1| - 0.031 14.4 0.0 0.12 12.5 0.0 1.9 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|433592981|ref|YP_007282477.1| - 0.038 14.1 0.2 0.15 12.2 0.2 1.9 1 1 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|433592981|ref|YP_007282477.1| - 0.038 13.7 0.0 0.064 12.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_18 PF13238.1 gi|433592981|ref|YP_007282477.1| - 0.11 12.8 0.0 0.27 11.5 0.0 1.7 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.17 gi|433592981|ref|YP_007282477.1| - 0.14 12.3 0.0 0.26 11.4 0.0 1.4 1 0 0 1 1 1 0 RNA helicase PLDc_N PF13396.1 gi|433592982|ref|YP_007282478.1| - 0.0005 19.6 0.6 0.00072 19.1 0.4 1.3 1 0 0 1 1 1 1 Phospholipase_D-nuclease N-terminal GpcrRhopsn4 PF10192.4 gi|433592982|ref|YP_007282478.1| - 0.063 12.4 0.0 0.069 12.3 0.0 1.0 1 0 0 1 1 1 0 Rhodopsin-like GPCR transmembrane domain Lig_chan PF00060.21 gi|433592982|ref|YP_007282478.1| - 0.15 11.7 0.0 0.28 10.8 0.0 1.5 2 0 0 2 2 2 0 Ligand-gated ion channel CBS PF00571.23 gi|433592986|ref|YP_007282482.1| - 1.3e-33 114.5 9.1 5.4e-12 45.2 0.1 4.1 4 0 0 4 4 4 4 CBS domain tRNA-synt_2b PF00587.20 gi|433592987|ref|YP_007282483.1| - 2.6e-53 180.1 0.0 4.2e-53 179.4 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|433592987|ref|YP_007282483.1| - 9.6e-23 79.9 0.1 2.2e-22 78.7 0.1 1.5 1 0 0 1 1 1 1 Anticodon binding domain zf-ribbon_3 PF13248.1 gi|433592987|ref|YP_007282483.1| - 0.00052 19.1 3.6 0.00062 18.8 1.0 2.2 2 1 0 2 2 2 1 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|433592987|ref|YP_007282483.1| - 0.025 14.0 0.5 8.6 5.9 0.1 2.6 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|433592987|ref|YP_007282483.1| - 0.028 14.3 0.2 3.5 7.6 0.0 2.5 2 0 0 2 2 2 0 Zinc ribbon domain Lar_restr_allev PF14354.1 gi|433592987|ref|YP_007282483.1| - 0.041 14.1 1.5 0.38 11.0 1.1 2.4 1 1 1 2 2 2 0 Restriction alleviation protein Lar Ribosomal_L32p PF01783.18 gi|433592987|ref|YP_007282483.1| - 0.069 13.3 0.0 0.52 10.5 0.0 2.3 3 0 0 3 3 3 0 Ribosomal L32p protein family zf-NADH-PPase PF09297.6 gi|433592987|ref|YP_007282483.1| - 0.35 10.4 2.4 1.1 8.7 0.0 2.3 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain TF_Zn_Ribbon PF08271.7 gi|433592987|ref|YP_007282483.1| - 2.1 7.7 7.3 2.8 7.3 1.9 2.9 2 1 0 2 2 2 0 TFIIB zinc-binding DUF2244 PF10003.4 gi|433592988|ref|YP_007282484.1| - 0.79 9.0 3.5 15 4.9 0.1 2.6 2 0 0 2 2 2 0 Integral membrane protein (DUF2244) MFS_1 PF07690.11 gi|433592989|ref|YP_007282485.1| - 2.8e-39 134.8 40.5 2.8e-39 134.8 28.1 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily LacY_symp PF01306.14 gi|433592989|ref|YP_007282485.1| - 6.7e-05 21.6 4.4 6.7e-05 21.6 3.1 2.0 2 1 0 2 2 2 1 LacY proton/sugar symporter MFS_1_like PF12832.2 gi|433592989|ref|YP_007282485.1| - 0.00059 19.5 11.0 0.033 13.9 0.0 3.9 3 1 0 4 4 4 2 MFS_1 like family DUF1228 PF06779.9 gi|433592989|ref|YP_007282485.1| - 0.0017 18.3 3.0 0.011 15.7 2.1 2.5 1 0 0 1 1 1 1 Protein of unknown function (DUF1228) DUF3464 PF11947.3 gi|433592989|ref|YP_007282485.1| - 6.5 6.2 8.8 2.9 7.3 0.8 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3464) TspO_MBR PF03073.10 gi|433592990|ref|YP_007282486.1| - 1e-45 154.8 20.6 1.2e-45 154.5 14.3 1.0 1 0 0 1 1 1 1 TspO/MBR family BPD_transp_2 PF02653.11 gi|433592990|ref|YP_007282486.1| - 0.3 10.0 19.2 0.11 11.4 5.8 2.0 1 1 1 2 2 2 0 Branched-chain amino acid transport system / permease component ERCC4 PF02732.10 gi|433592991|ref|YP_007282487.1| - 5.3e-25 87.8 0.0 1.6e-24 86.2 0.0 1.9 1 0 0 1 1 1 1 ERCC4 domain Helicase_C PF00271.26 gi|433592991|ref|YP_007282487.1| - 1.7e-18 66.2 0.0 4.6e-18 64.8 0.0 1.7 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DEAD PF00270.24 gi|433592991|ref|YP_007282487.1| - 2.7e-17 62.7 0.0 6.3e-17 61.5 0.0 1.6 1 0 0 1 1 1 1 DEAD/DEAH box helicase ResIII PF04851.10 gi|433592991|ref|YP_007282487.1| - 1e-11 44.9 0.0 3.2e-11 43.4 0.0 1.8 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit HHH_2 PF12826.2 gi|433592991|ref|YP_007282487.1| - 4e-09 36.2 1.0 1.2e-08 34.6 0.1 2.2 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|433592991|ref|YP_007282487.1| - 2.3e-08 34.0 1.3 1.6e-07 31.3 0.1 2.9 3 0 0 3 3 3 1 Helix-hairpin-helix domain HHH PF00633.18 gi|433592991|ref|YP_007282487.1| - 2.7e-06 26.7 0.3 0.00049 19.6 0.1 3.0 2 0 0 2 2 2 1 Helix-hairpin-helix motif Helicase_C_2 PF13307.1 gi|433592991|ref|YP_007282487.1| - 0.011 15.6 0.2 0.063 13.2 0.0 2.2 2 0 0 2 2 2 0 Helicase C-terminal domain 5_3_exonuc PF01367.15 gi|433592991|ref|YP_007282487.1| - 0.024 14.8 1.2 0.054 13.7 0.0 2.2 2 0 0 2 2 2 0 5'-3' exonuclease, C-terminal SAM fold PAP2 PF01569.16 gi|433592992|ref|YP_007282488.1| - 1.4e-14 53.9 4.9 1.4e-14 53.9 3.4 2.0 2 1 0 2 2 2 1 PAP2 superfamily PAP2_3 PF14378.1 gi|433592992|ref|YP_007282488.1| - 1.1e-09 38.0 8.1 1.9e-09 37.3 5.6 1.3 1 0 0 1 1 1 1 PAP2 superfamily DUF1212 PF06738.7 gi|433592992|ref|YP_007282488.1| - 0.028 13.8 0.9 0.028 13.8 0.6 2.2 3 0 0 3 3 3 0 Protein of unknown function (DUF1212) NdhL PF10716.4 gi|433592992|ref|YP_007282488.1| - 1.3 8.8 8.4 0.7 9.7 3.0 2.4 2 0 0 2 2 2 0 NADH dehydrogenase transmembrane subunit Auto_anti-p27 PF06677.7 gi|433592993|ref|YP_007282489.1| - 4.2e-17 61.6 1.3 6e-17 61.1 0.9 1.2 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DZR PF12773.2 gi|433592993|ref|YP_007282489.1| - 0.0059 16.3 1.4 0.013 15.3 1.0 1.5 1 0 0 1 1 1 1 Double zinc ribbon Prok-RING_1 PF14446.1 gi|433592993|ref|YP_007282489.1| - 0.024 14.3 0.4 0.044 13.5 0.3 1.4 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 GFA PF04828.9 gi|433592993|ref|YP_007282489.1| - 0.19 11.7 2.2 0.25 11.3 0.0 2.0 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme PADR1 PF08063.7 gi|433592993|ref|YP_007282489.1| - 0.21 10.9 1.2 0.49 9.8 0.9 1.6 1 1 0 1 1 1 0 PADR1 (NUC008) domain SP2 PF03014.9 gi|433592993|ref|YP_007282489.1| - 9.8 3.9 10.8 14 3.3 7.5 1.2 1 0 0 1 1 1 0 Structural protein 2 Lysine_decarbox PF03641.9 gi|433592994|ref|YP_007282490.1| - 1.2e-07 31.6 0.1 2e-07 30.8 0.1 1.3 1 0 0 1 1 1 1 Possible lysine decarboxylase DNA_processg_A PF02481.10 gi|433592994|ref|YP_007282490.1| - 5.3e-05 22.2 3.7 8.5e-05 21.5 2.6 1.3 1 0 0 1 1 1 1 DNA recombination-mediator protein A Nuc_deoxyrib_tr PF05014.10 gi|433592994|ref|YP_007282490.1| - 0.074 12.9 0.0 0.29 11.0 0.0 1.8 2 0 0 2 2 2 0 Nucleoside 2-deoxyribosyltransferase PALP PF00291.20 gi|433592994|ref|YP_007282490.1| - 0.074 12.2 1.1 0.092 11.9 0.7 1.3 1 1 0 1 1 1 0 Pyridoxal-phosphate dependent enzyme DAGK_cat PF00781.19 gi|433592994|ref|YP_007282490.1| - 0.42 10.0 6.1 0.58 9.5 0.8 2.2 1 1 1 2 2 2 0 Diacylglycerol kinase catalytic domain Ldh_1_N PF00056.18 gi|433592995|ref|YP_007282491.1| - 8.5e-39 132.5 0.5 1.2e-38 132.1 0.3 1.2 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain Ldh_1_C PF02866.13 gi|433592995|ref|YP_007282491.1| - 3.1e-35 121.4 0.0 4.5e-35 120.9 0.0 1.3 1 0 0 1 1 1 1 lactate/malate dehydrogenase, alpha/beta C-terminal domain Fer4_15 PF13459.1 gi|433592996|ref|YP_007282492.1| - 2.9e-17 62.9 3.4 3.6e-17 62.6 2.4 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|433592996|ref|YP_007282492.1| - 2.2e-06 27.9 1.1 4.8e-06 26.8 0.8 1.5 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_19 PF06902.6 gi|433592996|ref|YP_007282492.1| - 0.011 15.5 0.5 0.1 12.4 0.4 2.0 1 1 0 1 1 1 0 Divergent 4Fe-4S mono-cluster Fer4 PF00037.22 gi|433592996|ref|YP_007282492.1| - 0.022 14.3 1.5 1.9 8.1 0.1 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_10 PF13237.1 gi|433592996|ref|YP_007282492.1| - 0.078 12.7 0.1 0.2 11.4 0.1 1.8 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|433592996|ref|YP_007282492.1| - 0.094 12.6 0.9 2.2 8.3 0.1 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_7 PF12838.2 gi|433592996|ref|YP_007282492.1| - 0.14 12.5 0.3 25 5.3 0.1 2.4 2 0 0 2 2 2 0 4Fe-4S dicluster domain Methyltransf_11 PF08241.7 gi|433592997|ref|YP_007282493.1| - 1.5e-10 41.4 0.1 2.6e-10 40.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|433592997|ref|YP_007282493.1| - 3.3e-08 34.1 0.1 5.2e-08 33.4 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|433592997|ref|YP_007282493.1| - 1.5e-07 31.1 0.0 2.6e-07 30.3 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain TPMT PF05724.6 gi|433592997|ref|YP_007282493.1| - 8.2e-07 28.6 0.0 1.2e-06 28.1 0.0 1.1 1 0 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) Methyltransf_25 PF13649.1 gi|433592997|ref|YP_007282493.1| - 1.6e-06 28.4 0.0 2.8e-06 27.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|433592997|ref|YP_007282493.1| - 2.3e-06 27.4 0.0 3.6e-06 26.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|433592997|ref|YP_007282493.1| - 5.9e-05 23.0 0.4 0.00012 22.0 0.3 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|433592997|ref|YP_007282493.1| - 6.2e-05 23.3 0.0 0.00011 22.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.7 gi|433592997|ref|YP_007282493.1| - 0.00024 20.5 0.0 0.00035 19.9 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW CMAS PF02353.15 gi|433592997|ref|YP_007282493.1| - 0.012 14.7 0.0 0.017 14.1 0.0 1.1 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Pox_MCEL PF03291.11 gi|433592997|ref|YP_007282493.1| - 0.014 14.2 0.0 0.019 13.8 0.0 1.1 1 0 0 1 1 1 0 mRNA capping enzyme MTS PF05175.9 gi|433592997|ref|YP_007282493.1| - 0.038 13.3 0.0 0.06 12.7 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain PrmA PF06325.8 gi|433592997|ref|YP_007282493.1| - 0.054 12.6 0.0 0.082 12.0 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) TehB PF03848.9 gi|433592997|ref|YP_007282493.1| - 0.12 11.4 0.0 0.18 10.9 0.0 1.2 1 0 0 1 1 1 0 Tellurite resistance protein TehB PHO4 PF01384.15 gi|433592998|ref|YP_007282494.1| - 3.4e-36 124.5 28.6 5.4e-36 123.8 19.8 1.3 1 1 0 1 1 1 1 Phosphate transporter family DUF872 PF05915.7 gi|433592998|ref|YP_007282494.1| - 2.1 8.2 4.4 5.4 6.9 0.2 2.7 2 0 0 2 2 2 0 Eukaryotic protein of unknown function (DUF872) Usp PF00582.21 gi|433592999|ref|YP_007282495.1| - 2.4e-12 47.2 0.4 2.8e-12 47.0 0.3 1.0 1 0 0 1 1 1 1 Universal stress protein family ABC2_membrane_2 PF12679.2 gi|433593000|ref|YP_007282496.1| - 0.34 9.7 5.2 0.44 9.3 3.6 1.2 1 0 0 1 1 1 0 ABC-2 family transporter protein DUF4173 PF13777.1 gi|433593000|ref|YP_007282496.1| - 1.3 8.3 6.9 0.22 10.7 0.2 2.3 2 1 1 3 3 3 0 Domain of unknown function (DUF4173) PetG PF02529.10 gi|433593000|ref|YP_007282496.1| - 1.4 8.5 3.5 1.4 8.5 0.2 2.2 2 0 0 2 2 2 0 Cytochrome B6-F complex subunit 5 Bax1-I PF01027.15 gi|433593000|ref|YP_007282496.1| - 4.3 6.8 8.4 7 6.1 5.8 1.4 1 1 0 1 1 1 0 Inhibitor of apoptosis-promoting Bax1 CbtB PF09489.5 gi|433593000|ref|YP_007282496.1| - 7.6 6.5 6.9 4.8 7.1 0.1 2.9 3 0 0 3 3 3 0 Probable cobalt transporter subunit (CbtB) DEAD PF00270.24 gi|433593001|ref|YP_007282497.1| - 1.3e-25 89.8 0.0 2.2e-25 89.0 0.0 1.4 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|433593001|ref|YP_007282497.1| - 4.1e-07 29.7 0.0 8.2e-07 28.8 0.0 1.5 1 0 0 1 1 1 1 Helicase conserved C-terminal domain HHH_5 PF14520.1 gi|433593001|ref|YP_007282497.1| - 5.5e-07 29.6 3.4 9e-07 28.9 0.5 2.7 2 0 0 2 2 2 1 Helix-hairpin-helix domain ResIII PF04851.10 gi|433593001|ref|YP_007282497.1| - 7.1e-07 29.2 0.0 2.3e-06 27.5 0.0 1.8 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit DNA_pol_lambd_f PF10391.4 gi|433593001|ref|YP_007282497.1| - 0.00064 19.2 0.0 0.0017 17.8 0.0 1.7 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda HHH PF00633.18 gi|433593001|ref|YP_007282497.1| - 0.025 14.2 0.0 1.1 9.1 0.0 3.0 2 0 0 2 2 2 0 Helix-hairpin-helix motif CGI-121 PF08617.5 gi|433593002|ref|YP_007282498.1| - 9e-15 54.7 0.0 1.1e-14 54.4 0.0 1.0 1 0 0 1 1 1 1 Kinase binding protein CGI-121 PGDYG PF14083.1 gi|433593002|ref|YP_007282498.1| - 0.044 14.1 0.1 0.093 13.1 0.1 1.6 1 1 0 1 1 1 0 PGDYG protein MDMPI_C PF07398.6 gi|433593002|ref|YP_007282498.1| - 5 7.7 12.3 0.77 10.3 5.1 2.1 1 1 1 2 2 2 0 MDMPI C-terminal domain Oxidored_FMN PF00724.15 gi|433593003|ref|YP_007282499.1| - 7e-40 137.0 0.0 1.2e-35 123.0 0.0 2.1 2 0 0 2 2 2 2 NADH:flavin oxidoreductase / NADH oxidase family His_biosynth PF00977.16 gi|433593003|ref|YP_007282499.1| - 0.062 12.5 0.0 0.14 11.4 0.0 1.5 1 0 0 1 1 1 0 Histidine biosynthesis protein Dus PF01207.12 gi|433593003|ref|YP_007282499.1| - 0.066 12.0 0.0 0.16 10.7 0.0 1.6 1 0 0 1 1 1 0 Dihydrouridine synthase (Dus) NMO PF03060.10 gi|433593003|ref|YP_007282499.1| - 0.071 12.2 0.0 0.16 11.0 0.0 1.5 1 0 0 1 1 1 0 Nitronate monooxygenase Rhodanese PF00581.15 gi|433593004|ref|YP_007282500.1| - 1.2e-07 32.0 0.0 2e-07 31.3 0.0 1.3 1 0 0 1 1 1 1 Rhodanese-like domain TAT_signal PF10518.4 gi|433593004|ref|YP_007282500.1| - 0.64 10.1 2.9 1.4 9.1 2.0 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence HNH PF01844.18 gi|433593005|ref|YP_007282501.1| - 0.028 14.2 7.9 0.23 11.3 5.5 2.1 1 1 0 1 1 1 0 HNH endonuclease IMP_cyclohyd PF07826.6 gi|433593006|ref|YP_007282502.1| - 3e-61 206.2 0.0 3.5e-61 206.0 0.0 1.0 1 0 0 1 1 1 1 IMP cyclohydrolase-like protein Metallophos_2 PF12850.2 gi|433593007|ref|YP_007282503.1| - 2.6e-32 111.8 0.0 3.2e-32 111.5 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|433593007|ref|YP_007282503.1| - 6.5e-09 35.4 0.2 9.5e-09 34.9 0.2 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_3 PF14582.1 gi|433593007|ref|YP_007282503.1| - 0.05 12.7 0.0 0.084 12.0 0.0 1.4 1 0 0 1 1 1 0 Metallophosphoesterase, calcineurin superfamily Hexapep PF00132.19 gi|433593008|ref|YP_007282504.1| - 5.9e-15 54.0 3.6 3.3e-08 32.6 0.1 3.2 2 1 0 3 3 3 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|433593008|ref|YP_007282504.1| - 6.6e-07 28.7 6.1 5.6e-06 25.8 0.4 3.0 2 1 0 2 2 2 2 Hexapeptide repeat of succinyl-transferase SATase_N PF06426.9 gi|433593008|ref|YP_007282504.1| - 0.00034 20.8 0.0 0.00056 20.1 0.0 1.3 1 0 0 1 1 1 1 Serine acetyltransferase, N-terminal PGM_PMM_I PF02878.11 gi|433593009|ref|YP_007282505.1| - 5.7e-39 132.7 0.0 1.1e-38 131.8 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_III PF02880.11 gi|433593009|ref|YP_007282505.1| - 1.2e-21 76.7 0.0 2.2e-21 76.0 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_II PF02879.11 gi|433593009|ref|YP_007282505.1| - 2.2e-21 76.1 0.2 4.5e-21 75.1 0.1 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.15 gi|433593009|ref|YP_007282505.1| - 3e-15 55.9 0.6 7.2e-15 54.7 0.1 1.9 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain GIY-YIG PF01541.19 gi|433593011|ref|YP_007282507.1| - 1.3e-13 51.0 0.1 1.5e-13 50.9 0.1 1.0 1 0 0 1 1 1 1 GIY-YIG catalytic domain T5orf172 PF10544.4 gi|433593011|ref|YP_007282507.1| - 0.11 12.9 0.1 0.13 12.6 0.1 1.3 1 1 0 1 1 1 0 T5orf172 domain DZR PF12773.2 gi|433593012|ref|YP_007282508.1| - 0.0055 16.5 0.5 0.0063 16.3 0.4 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|433593012|ref|YP_007282508.1| - 0.11 12.0 1.3 0.15 11.6 0.9 1.5 1 1 0 1 1 1 0 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|433593012|ref|YP_007282508.1| - 0.34 10.1 1.8 2.1 7.6 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain AIRC PF00731.15 gi|433593013|ref|YP_007282509.1| - 8.8e-16 57.5 4.5 8.8e-16 57.5 3.1 1.9 2 0 0 2 2 2 1 AIR carboxylase zf-HC2 PF13490.1 gi|433593013|ref|YP_007282509.1| - 0.21 11.5 2.3 0.2 11.5 0.4 1.9 2 0 0 2 2 2 0 Putative zinc-finger DUF1931 PF09123.6 gi|433593014|ref|YP_007282510.1| - 4.6e-05 23.3 1.2 5.1e-05 23.2 0.8 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1931) CBFD_NFYB_HMF PF00808.18 gi|433593014|ref|YP_007282510.1| - 0.0011 18.9 0.1 0.0018 18.2 0.1 1.4 1 1 0 1 1 1 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Histone PF00125.19 gi|433593014|ref|YP_007282510.1| - 0.0013 18.8 0.0 0.0015 18.5 0.0 1.4 1 1 0 1 1 1 1 Core histone H2A/H2B/H3/H4 OmdA PF13376.1 gi|433593014|ref|YP_007282510.1| - 0.091 12.4 0.3 0.14 11.8 0.1 1.4 1 1 0 1 1 1 0 Bacteriocin-protection, YdeI or OmpD-Associated DUF2191 PF09957.4 gi|433593014|ref|YP_007282510.1| - 0.12 12.2 2.9 0.7 9.7 0.6 2.1 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2191) Glutaredoxin PF00462.19 gi|433593014|ref|YP_007282510.1| - 0.16 11.9 0.3 0.2 11.6 0.2 1.2 1 0 0 1 1 1 0 Glutaredoxin DUF3325 PF11804.3 gi|433593015|ref|YP_007282511.1| - 0.081 12.8 1.3 5.7 6.9 0.2 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3325) Rib_5-P_isom_A PF06026.9 gi|433593017|ref|YP_007282513.1| - 2.3e-57 193.0 0.1 2.9e-57 192.7 0.0 1.1 1 0 0 1 1 1 1 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DeoRC PF00455.17 gi|433593017|ref|YP_007282513.1| - 9.9e-06 25.2 0.2 0.0036 16.9 0.0 2.2 2 0 0 2 2 2 2 DeoR C terminal sensor domain ABC2_membrane_2 PF12679.2 gi|433593018|ref|YP_007282514.1| - 1.3e-38 132.4 13.1 1.5e-38 132.2 9.1 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|433593018|ref|YP_007282514.1| - 3.4e-15 55.8 16.6 7e-15 54.8 11.5 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|433593018|ref|YP_007282514.1| - 1.6e-08 33.9 12.3 1.6e-08 33.9 8.5 1.8 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|433593018|ref|YP_007282514.1| - 1.1e-05 24.8 4.6 1.9e-05 24.0 3.2 1.5 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|433593018|ref|YP_007282514.1| - 3.1e-05 23.2 8.5 3.1e-05 23.2 5.9 1.8 1 1 0 1 1 1 1 ABC-2 type transporter ABC_tran PF00005.22 gi|433593019|ref|YP_007282515.1| - 7.7e-26 91.0 0.0 1.1e-25 90.4 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|433593019|ref|YP_007282515.1| - 3e-13 50.3 0.0 1.4e-08 35.0 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_10 PF12846.2 gi|433593019|ref|YP_007282515.1| - 0.00068 19.1 0.0 0.03 13.7 0.0 2.2 2 0 0 2 2 2 1 AAA-like domain DUF4162 PF13732.1 gi|433593019|ref|YP_007282515.1| - 0.00073 19.9 0.0 0.0017 18.7 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) SMC_N PF02463.14 gi|433593019|ref|YP_007282515.1| - 0.0015 17.8 0.0 0.2 10.8 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|433593019|ref|YP_007282515.1| - 0.0017 18.3 0.0 0.0033 17.4 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain DUF258 PF03193.11 gi|433593019|ref|YP_007282515.1| - 0.0019 17.4 0.0 0.0031 16.7 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_29 PF13555.1 gi|433593019|ref|YP_007282515.1| - 0.01 15.3 0.0 0.019 14.4 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_17 PF13207.1 gi|433593019|ref|YP_007282515.1| - 0.02 15.7 0.1 0.062 14.1 0.0 1.9 2 1 0 2 2 2 0 AAA domain ATP_bind_1 PF03029.12 gi|433593019|ref|YP_007282515.1| - 0.045 13.2 0.0 0.083 12.4 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_30 PF13604.1 gi|433593019|ref|YP_007282515.1| - 0.063 12.8 0.0 0.26 10.8 0.0 1.9 1 1 0 1 1 1 0 AAA domain ArgK PF03308.11 gi|433593019|ref|YP_007282515.1| - 0.078 11.7 0.0 0.14 10.8 0.0 1.4 1 0 0 1 1 1 0 ArgK protein AAA_23 PF13476.1 gi|433593019|ref|YP_007282515.1| - 0.09 13.0 0.1 0.15 12.3 0.1 1.3 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.18 gi|433593019|ref|YP_007282515.1| - 0.14 12.1 0.1 0.37 10.7 0.1 2.0 1 1 0 1 1 1 0 50S ribosome-binding GTPase CitMHS PF03600.11 gi|433593020|ref|YP_007282516.1| - 0.00024 19.8 0.2 0.00028 19.5 0.1 1.1 1 0 0 1 1 1 1 Citrate transporter DUF2613 PF11021.3 gi|433593020|ref|YP_007282516.1| - 0.0016 18.1 2.2 0.017 14.8 0.1 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF2613) FixQ PF05545.6 gi|433593020|ref|YP_007282516.1| - 0.0055 16.3 5.5 0.0093 15.5 0.0 2.3 1 1 1 2 2 2 1 Cbb3-type cytochrome oxidase component FixQ DUF1282 PF06930.7 gi|433593020|ref|YP_007282516.1| - 0.0063 16.1 1.3 0.0079 15.8 0.9 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1282) DUF4010 PF13194.1 gi|433593020|ref|YP_007282516.1| - 0.008 15.4 1.4 0.011 15.1 1.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4010) Chromate_transp PF02417.10 gi|433593020|ref|YP_007282516.1| - 0.016 14.7 1.7 0.017 14.7 1.2 1.1 1 0 0 1 1 1 0 Chromate transporter DUF2407_C PF13373.1 gi|433593020|ref|YP_007282516.1| - 0.023 14.6 0.3 0.035 14.0 0.2 1.4 1 1 0 1 1 1 0 DUF2407 C-terminal domain DUF4396 PF14342.1 gi|433593020|ref|YP_007282516.1| - 0.025 14.7 0.3 0.079 13.0 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4396) DUF1129 PF06570.6 gi|433593020|ref|YP_007282516.1| - 0.057 12.7 0.5 0.073 12.3 0.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1129) DUF4199 PF13858.1 gi|433593020|ref|YP_007282516.1| - 0.063 13.2 0.9 0.081 12.8 0.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4199) DUF3112 PF11309.3 gi|433593020|ref|YP_007282516.1| - 0.064 13.0 0.0 0.078 12.7 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3112) TMEM37 PF15108.1 gi|433593020|ref|YP_007282516.1| - 0.1 12.3 0.1 0.12 12.0 0.1 1.0 1 0 0 1 1 1 0 Voltage-dependent calcium channel gamma-like subunit protein family Chordopox_A13L PF05961.6 gi|433593020|ref|YP_007282516.1| - 0.12 12.3 0.2 1.3 8.9 0.0 2.0 2 0 0 2 2 2 0 Chordopoxvirus A13L protein Yip1 PF04893.12 gi|433593020|ref|YP_007282516.1| - 0.24 10.8 7.5 0.65 9.4 5.4 1.5 1 1 0 1 1 1 0 Yip1 domain DUF2975 PF11188.3 gi|433593020|ref|YP_007282516.1| - 0.28 10.8 2.8 0.36 10.5 1.9 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2975) FtsX PF02687.16 gi|433593020|ref|YP_007282516.1| - 0.54 10.0 5.6 0.89 9.3 3.9 1.3 1 1 0 1 1 1 0 FtsX-like permease family DUF1049 PF06305.6 gi|433593020|ref|YP_007282516.1| - 6.1 6.3 11.7 0.23 10.9 0.8 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1049) ABC_tran PF00005.22 gi|433593021|ref|YP_007282517.1| - 2.4e-32 112.0 0.0 3.2e-32 111.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|433593021|ref|YP_007282517.1| - 2.5e-10 40.8 0.0 3.6e-05 23.8 0.0 2.1 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|433593021|ref|YP_007282517.1| - 5.7e-08 32.2 0.0 0.00054 19.2 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|433593021|ref|YP_007282517.1| - 1.9e-05 24.0 0.1 3.8e-05 23.1 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_10 PF12846.2 gi|433593021|ref|YP_007282517.1| - 0.00036 20.0 0.6 0.0005 19.6 0.4 1.5 1 1 0 1 1 1 1 AAA-like domain AAA_25 PF13481.1 gi|433593021|ref|YP_007282517.1| - 0.00087 18.7 1.2 0.0043 16.4 0.8 2.0 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|433593021|ref|YP_007282517.1| - 0.0013 17.9 0.0 0.0028 16.8 0.0 1.6 2 0 0 2 2 2 1 Protein of unknown function, DUF258 AAA_22 PF13401.1 gi|433593021|ref|YP_007282517.1| - 0.0017 18.4 0.5 0.11 12.6 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|433593021|ref|YP_007282517.1| - 0.006 16.5 1.1 0.014 15.3 0.8 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_18 PF13238.1 gi|433593021|ref|YP_007282517.1| - 0.0067 16.7 0.3 0.75 10.1 0.0 2.3 2 0 0 2 2 2 1 AAA domain MMR_HSR1 PF01926.18 gi|433593021|ref|YP_007282517.1| - 0.0099 15.8 0.5 0.14 12.1 0.3 2.3 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_17 PF13207.1 gi|433593021|ref|YP_007282517.1| - 0.015 16.1 1.7 0.048 14.4 1.2 2.2 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|433593021|ref|YP_007282517.1| - 0.022 14.6 1.5 0.17 11.7 1.0 2.3 1 1 0 1 1 1 0 AAA domain AAA_23 PF13476.1 gi|433593021|ref|YP_007282517.1| - 0.039 14.2 0.0 0.067 13.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain MacB_PCD PF12704.2 gi|433593022|ref|YP_007282518.1| - 1.9e-36 125.8 0.3 1.9e-36 125.8 0.2 1.8 2 0 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.16 gi|433593022|ref|YP_007282518.1| - 4.8e-26 90.9 6.2 4.8e-26 90.9 4.3 2.1 2 0 0 2 2 2 1 FtsX-like permease family PPV_E1_N PF00524.13 gi|433593022|ref|YP_007282518.1| - 0.079 13.1 2.6 0.13 12.4 1.8 1.3 1 0 0 1 1 1 0 E1 Protein, N terminal domain Rick_17kDa_Anti PF05433.10 gi|433593023|ref|YP_007282519.1| - 5.4e-05 22.7 8.7 2.6 7.7 0.1 3.9 3 1 0 3 3 3 3 Glycine zipper 2TM domain Gly-zipper_YMGG PF13441.1 gi|433593023|ref|YP_007282519.1| - 5.4 6.6 16.3 3.3 7.3 7.8 2.9 2 1 0 2 2 2 0 YMGG-like Gly-zipper AtpR PF12966.2 gi|433593024|ref|YP_007282520.1| - 0.044 13.9 1.9 0.059 13.5 0.2 1.9 2 0 0 2 2 2 0 N-ATPase, AtpR subunit Polysacc_synt_C PF14667.1 gi|433593024|ref|YP_007282520.1| - 0.053 13.3 1.9 0.058 13.1 1.3 1.1 1 0 0 1 1 1 0 Polysaccharide biosynthesis C-terminal domain DUF3262 PF11660.3 gi|433593024|ref|YP_007282520.1| - 0.12 12.5 0.4 0.41 10.7 0.0 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF3262) DUF2162 PF09930.4 gi|433593024|ref|YP_007282520.1| - 0.22 10.6 2.0 0.27 10.3 1.3 1.4 1 1 0 1 1 1 0 Predicted transporter (DUF2162) zf-trcl PF13451.1 gi|433593025|ref|YP_007282521.1| - 2.5 7.7 5.0 4.4 7.0 3.5 1.3 1 0 0 1 1 1 0 Probable zinc-binding domain GtrA PF04138.9 gi|433593026|ref|YP_007282522.1| - 0.08 12.9 0.4 0.095 12.6 0.3 1.2 1 0 0 1 1 1 0 GtrA-like protein DUF4083 PF13314.1 gi|433593026|ref|YP_007282522.1| - 0.72 9.7 3.1 0.46 10.3 0.2 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4083) DUF4229 PF14012.1 gi|433593026|ref|YP_007282522.1| - 3.2 7.7 7.0 9.6 6.1 4.8 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF4229) HTH_20 PF12840.2 gi|433593027|ref|YP_007282523.1| - 1.5e-06 27.9 2.2 1.7e-06 27.7 0.5 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|433593027|ref|YP_007282523.1| - 6e-06 25.7 0.8 1.3e-05 24.6 0.5 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_11 PF08279.7 gi|433593027|ref|YP_007282523.1| - 3.4e-05 23.3 0.6 6e-05 22.6 0.4 1.3 1 0 0 1 1 1 1 HTH domain MarR PF01047.17 gi|433593027|ref|YP_007282523.1| - 7.8e-05 22.2 0.4 0.00015 21.3 0.3 1.4 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.2 gi|433593027|ref|YP_007282523.1| - 8.4e-05 22.1 0.2 0.00021 20.9 0.2 1.7 1 0 0 1 1 1 1 MarR family HTH_23 PF13384.1 gi|433593027|ref|YP_007282523.1| - 0.00013 21.5 0.7 0.00026 20.5 0.5 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_24 PF13412.1 gi|433593027|ref|YP_007282523.1| - 0.00015 21.0 0.6 0.00023 20.4 0.4 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.1 gi|433593027|ref|YP_007282523.1| - 0.00018 21.7 1.8 0.0015 18.8 0.4 2.5 2 1 0 2 2 2 1 Winged helix DNA-binding domain HTH_5 PF01022.15 gi|433593027|ref|YP_007282523.1| - 0.00026 20.5 0.2 0.00049 19.7 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_45 PF14947.1 gi|433593027|ref|YP_007282523.1| - 0.00037 20.2 0.0 0.00062 19.5 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix TrmB PF01978.14 gi|433593027|ref|YP_007282523.1| - 0.00054 19.6 0.0 0.0012 18.4 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB GntR PF00392.16 gi|433593027|ref|YP_007282523.1| - 0.0013 18.1 0.1 0.0025 17.1 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_Crp_2 PF13545.1 gi|433593027|ref|YP_007282523.1| - 0.0017 18.0 0.6 0.0039 16.9 0.4 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_28 PF13518.1 gi|433593027|ref|YP_007282523.1| - 0.0019 18.1 0.3 0.0051 16.7 0.2 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain Rrf2 PF02082.15 gi|433593027|ref|YP_007282523.1| - 0.01 15.9 0.0 0.02 14.9 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator HTH_3 PF01381.17 gi|433593027|ref|YP_007282523.1| - 0.032 14.0 0.5 0.062 13.1 0.4 1.4 1 0 0 1 1 1 0 Helix-turn-helix HTH_8 PF02954.14 gi|433593027|ref|YP_007282523.1| - 0.055 13.0 0.4 0.14 11.7 0.3 1.7 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family HTH_30 PF13556.1 gi|433593027|ref|YP_007282523.1| - 0.058 13.0 0.5 0.15 11.6 0.3 1.7 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain HTH_DeoR PF08220.7 gi|433593027|ref|YP_007282523.1| - 0.059 12.9 0.6 0.13 11.8 0.4 1.5 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain DUF134 PF02001.11 gi|433593027|ref|YP_007282523.1| - 0.11 12.3 0.1 0.22 11.4 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function DUF134 HxlR PF01638.12 gi|433593027|ref|YP_007282523.1| - 0.27 10.8 1.7 0.9 9.2 0.8 2.1 2 1 0 2 2 2 0 HxlR-like helix-turn-helix UPF0118 PF01594.11 gi|433593029|ref|YP_007282525.1| - 3.4e-34 118.2 32.0 6.8e-34 117.3 22.2 1.4 1 1 0 1 1 1 1 Domain of unknown function DUF20 SBP_bac_6 PF13343.1 gi|433593030|ref|YP_007282526.1| - 2.6e-26 92.4 0.0 3.8e-26 91.9 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.1 gi|433593030|ref|YP_007282526.1| - 5.2e-22 78.9 0.6 6.4e-22 78.6 0.4 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|433593030|ref|YP_007282526.1| - 9.5e-09 35.4 1.1 1.3e-08 34.9 0.8 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.1 gi|433593030|ref|YP_007282526.1| - 0.0057 16.3 0.0 0.0094 15.5 0.0 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein BPD_transp_1 PF00528.17 gi|433593031|ref|YP_007282527.1| - 1.5e-29 102.8 41.5 1.1e-17 64.2 9.0 3.1 3 1 0 3 3 3 2 Binding-protein-dependent transport system inner membrane component E1-E2_ATPase PF00122.15 gi|433593031|ref|YP_007282527.1| - 6.2 5.7 6.7 0.76 8.7 0.5 2.5 3 0 0 3 3 3 0 E1-E2 ATPase ABC_tran PF00005.22 gi|433593032|ref|YP_007282528.1| - 7.6e-33 113.7 0.0 1.3e-32 112.9 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|433593032|ref|YP_007282528.1| - 2.1e-08 34.4 0.0 0.00019 21.5 0.0 2.2 2 0 0 2 2 2 2 AAA domain TOBE_2 PF08402.5 gi|433593032|ref|YP_007282528.1| - 2.9e-07 30.3 4.4 3.7e-07 30.0 0.3 2.9 3 1 0 3 3 2 1 TOBE domain TOBE PF03459.12 gi|433593032|ref|YP_007282528.1| - 5.9e-06 26.2 2.5 0.0014 18.7 0.1 2.9 3 0 0 3 3 2 1 TOBE domain AAA_22 PF13401.1 gi|433593032|ref|YP_007282528.1| - 0.00024 21.2 0.1 0.0011 19.1 0.1 1.9 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|433593032|ref|YP_007282528.1| - 0.001 18.3 0.0 0.07 12.3 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|433593032|ref|YP_007282528.1| - 0.002 18.1 1.2 0.027 14.4 0.0 2.2 2 0 0 2 2 2 1 AAA ATPase domain AAA PF00004.24 gi|433593032|ref|YP_007282528.1| - 0.0037 17.4 0.1 0.052 13.7 0.0 2.1 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_15 PF13175.1 gi|433593032|ref|YP_007282528.1| - 0.0041 16.2 0.0 0.038 13.0 0.0 1.9 2 0 0 2 2 2 1 AAA ATPase domain AAA_25 PF13481.1 gi|433593032|ref|YP_007282528.1| - 0.039 13.3 0.1 0.19 11.1 0.0 2.0 2 1 0 2 2 2 0 AAA domain SbcCD_C PF13558.1 gi|433593032|ref|YP_007282528.1| - 0.046 13.6 0.3 0.27 11.1 0.2 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit Rad17 PF03215.10 gi|433593032|ref|YP_007282528.1| - 0.051 12.2 0.0 0.07 11.7 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA_29 PF13555.1 gi|433593032|ref|YP_007282528.1| - 0.061 12.8 0.0 0.12 11.9 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_14 PF13173.1 gi|433593032|ref|YP_007282528.1| - 0.11 12.4 0.0 0.39 10.6 0.0 1.8 2 0 0 2 2 2 0 AAA domain DUF258 PF03193.11 gi|433593032|ref|YP_007282528.1| - 0.11 11.6 0.0 0.2 10.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 Zeta_toxin PF06414.7 gi|433593032|ref|YP_007282528.1| - 0.14 11.2 0.2 0.66 9.0 0.0 1.9 2 0 0 2 2 2 0 Zeta toxin AAA_33 PF13671.1 gi|433593032|ref|YP_007282528.1| - 0.14 12.0 1.3 0.34 10.7 0.0 2.1 2 1 0 2 2 2 0 AAA domain SRP54 PF00448.17 gi|433593032|ref|YP_007282528.1| - 0.14 11.5 0.2 1.2 8.5 0.1 2.0 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain NB-ARC PF00931.17 gi|433593032|ref|YP_007282528.1| - 0.16 10.7 0.0 0.25 10.1 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain AAA_23 PF13476.1 gi|433593032|ref|YP_007282528.1| - 0.36 11.1 0.2 0.36 11.1 0.1 1.4 2 0 0 2 2 1 0 AAA domain CarboxypepD_reg PF13620.1 gi|433593033|ref|YP_007282529.1| - 0.018 15.1 0.0 0.025 14.6 0.0 1.4 1 1 0 1 1 1 0 Carboxypeptidase regulatory-like domain CitMHS PF03600.11 gi|433593035|ref|YP_007282531.1| - 2e-34 118.7 15.6 3.2e-34 118.0 10.8 1.3 1 0 0 1 1 1 1 Citrate transporter Na_sulph_symp PF00939.14 gi|433593035|ref|YP_007282531.1| - 6.7e-23 81.2 41.1 2e-16 59.9 11.6 3.1 2 1 0 3 3 3 3 Sodium:sulfate symporter transmembrane region TrkA_C PF02080.16 gi|433593035|ref|YP_007282531.1| - 4.6e-22 77.3 5.5 1.2e-11 44.0 0.2 2.5 2 0 0 2 2 2 2 TrkA-C domain Peptidase_S24 PF00717.18 gi|433593035|ref|YP_007282531.1| - 0.11 12.1 0.1 0.24 11.0 0.0 1.5 1 0 0 1 1 1 0 Peptidase S24-like DUF3353 PF11833.3 gi|433593036|ref|YP_007282532.1| - 0.088 12.2 3.4 0.11 11.9 2.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3353) Yip1 PF04893.12 gi|433593036|ref|YP_007282532.1| - 0.11 11.9 7.3 0.13 11.7 5.1 1.1 1 0 0 1 1 1 0 Yip1 domain CTP_transf_2 PF01467.21 gi|433593037|ref|YP_007282533.1| - 3.1e-11 43.5 0.3 1.9e-10 41.0 0.2 1.9 1 1 0 1 1 1 1 Cytidylyltransferase FAD_syn PF06574.7 gi|433593037|ref|YP_007282533.1| - 0.047 13.3 0.1 0.089 12.4 0.1 1.5 2 0 0 2 2 2 0 FAD synthetase Helicase_C_2 PF13307.1 gi|433593038|ref|YP_007282534.1| - 6.8e-34 117.2 0.0 1.7e-33 115.9 0.0 1.7 2 0 0 2 2 2 1 Helicase C-terminal domain DEAD_2 PF06733.10 gi|433593038|ref|YP_007282534.1| - 2.3e-09 36.8 0.0 1.7e-08 34.0 0.0 2.2 1 1 0 1 1 1 1 DEAD_2 ResIII PF04851.10 gi|433593038|ref|YP_007282534.1| - 0.00057 19.7 0.0 0.0053 16.6 0.0 2.1 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit PhoH PF02562.11 gi|433593038|ref|YP_007282534.1| - 0.0009 18.5 0.0 0.0018 17.5 0.0 1.4 1 0 0 1 1 1 1 PhoH-like protein AAA_19 PF13245.1 gi|433593038|ref|YP_007282534.1| - 0.0019 17.8 0.0 0.012 15.3 0.0 2.3 2 0 0 2 2 2 1 Part of AAA domain DEAD PF00270.24 gi|433593038|ref|YP_007282534.1| - 0.0047 16.4 0.0 0.86 9.0 0.0 2.4 2 0 0 2 2 2 1 DEAD/DEAH box helicase DUF2075 PF09848.4 gi|433593038|ref|YP_007282534.1| - 0.013 14.4 0.0 0.085 11.8 0.0 1.9 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) AAA_30 PF13604.1 gi|433593038|ref|YP_007282534.1| - 0.087 12.3 0.0 2.5 7.6 0.0 2.4 2 0 0 2 2 2 0 AAA domain UvrD-helicase PF00580.16 gi|433593038|ref|YP_007282534.1| - 0.31 10.3 0.0 0.49 9.6 0.0 1.2 1 0 0 1 1 1 0 UvrD/REP helicase N-terminal domain DUF371 PF04027.8 gi|433593039|ref|YP_007282535.1| - 0.00064 19.3 0.0 0.00077 19.1 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF371) DUF1684 PF07920.6 gi|433593040|ref|YP_007282536.1| - 1.1e-49 167.9 0.1 1.6e-49 167.4 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1684) Methyltransf_11 PF08241.7 gi|433593041|ref|YP_007282537.1| - 9.9e-25 86.8 0.0 1.6e-24 86.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|433593041|ref|YP_007282537.1| - 6.7e-17 61.4 0.0 8.4e-17 61.1 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|433593041|ref|YP_007282537.1| - 7.9e-14 51.6 0.1 1.1e-13 51.2 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|433593041|ref|YP_007282537.1| - 4.9e-13 49.2 0.0 9.7e-13 48.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|433593041|ref|YP_007282537.1| - 1.3e-11 44.0 0.0 2.3e-11 43.2 0.0 1.4 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.7 gi|433593041|ref|YP_007282537.1| - 3e-11 43.6 0.0 4.6e-11 43.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|433593041|ref|YP_007282537.1| - 1.1e-10 42.0 0.0 1.9e-10 41.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|433593041|ref|YP_007282537.1| - 5e-09 36.2 0.3 1.3e-08 34.8 0.1 1.8 2 0 0 2 2 2 1 Methyltransferase domain CMAS PF02353.15 gi|433593041|ref|YP_007282537.1| - 0.00013 21.1 0.0 0.00017 20.7 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase MetW PF07021.7 gi|433593041|ref|YP_007282537.1| - 0.0003 20.2 0.0 0.00043 19.6 0.0 1.3 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_32 PF13679.1 gi|433593041|ref|YP_007282537.1| - 0.00047 19.8 0.0 0.00077 19.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_9 PF08003.6 gi|433593041|ref|YP_007282537.1| - 0.00048 18.9 0.0 0.00071 18.3 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) PCMT PF01135.14 gi|433593041|ref|YP_007282537.1| - 0.0028 17.2 0.0 0.0052 16.3 0.0 1.4 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MTS PF05175.9 gi|433593041|ref|YP_007282537.1| - 0.0029 16.9 0.0 0.0055 16.0 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_8 PF05148.10 gi|433593041|ref|YP_007282537.1| - 0.0054 16.3 0.0 0.019 14.5 0.0 1.8 1 1 0 1 1 1 1 Hypothetical methyltransferase Methyltransf_24 PF13578.1 gi|433593041|ref|YP_007282537.1| - 0.016 15.9 0.0 0.041 14.7 0.0 1.7 1 0 0 1 1 1 0 Methyltransferase domain N6_N4_Mtase PF01555.13 gi|433593041|ref|YP_007282537.1| - 0.026 14.0 0.0 2 7.8 0.0 2.2 2 0 0 2 2 2 0 DNA methylase Fibrillarin PF01269.12 gi|433593041|ref|YP_007282537.1| - 0.038 12.8 0.0 0.062 12.2 0.0 1.3 1 0 0 1 1 1 0 Fibrillarin DUF2934 PF11154.3 gi|433593041|ref|YP_007282537.1| - 0.65 9.4 5.7 0.18 11.1 1.6 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2934) KaiC PF06745.8 gi|433593042|ref|YP_007282538.1| - 1.6e-06 27.4 0.0 2e-06 27.1 0.0 1.1 1 0 0 1 1 1 1 KaiC SIP PF04954.8 gi|433593042|ref|YP_007282538.1| - 0.16 12.3 0.1 0.33 11.3 0.0 1.6 2 0 0 2 2 2 0 Siderophore-interacting protein Avirulence PF03377.8 gi|433593042|ref|YP_007282538.1| - 0.16 10.6 0.0 0.19 10.3 0.0 1.1 1 0 0 1 1 1 0 Xanthomonas avirulence protein, Avr/PthA DUF378 PF04070.7 gi|433593044|ref|YP_007282540.1| - 0.033 13.7 0.5 0.035 13.7 0.4 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF378) DUF2072 PF09845.4 gi|433593045|ref|YP_007282541.1| - 7.6e-30 103.5 0.2 1e-13 51.3 0.0 2.4 2 0 0 2 2 2 2 Zn-ribbon containing protein (DUF2072) DUF1451 PF07295.6 gi|433593045|ref|YP_007282541.1| - 0.023 14.4 0.9 0.04 13.6 0.6 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1451) zf-C2HC_2 PF13913.1 gi|433593045|ref|YP_007282541.1| - 0.075 12.7 0.6 0.16 11.6 0.4 1.5 1 0 0 1 1 1 0 zinc-finger of a C2HC-type zinc_ribbon_2 PF13240.1 gi|433593045|ref|YP_007282541.1| - 0.23 10.9 4.3 0.4 10.2 2.9 1.4 1 0 0 1 1 1 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|433593045|ref|YP_007282541.1| - 0.36 10.8 2.7 1 9.3 1.9 1.7 1 1 0 1 1 1 0 Zinc ribbon domain DUF2073 PF09846.4 gi|433593046|ref|YP_007282542.1| - 1.2e-45 153.4 0.9 1.4e-45 153.2 0.6 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2073) MMR_HSR1 PF01926.18 gi|433593047|ref|YP_007282543.1| - 1.5e-15 57.1 0.0 2e-15 56.7 0.0 1.2 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU PF00009.22 gi|433593047|ref|YP_007282543.1| - 9.9e-12 44.6 0.3 2.7e-05 23.7 0.0 2.7 2 2 0 2 2 2 2 Elongation factor Tu GTP binding domain Arf PF00025.16 gi|433593047|ref|YP_007282543.1| - 3.8e-07 29.5 0.0 0.00039 19.7 0.0 2.5 2 1 1 3 3 3 2 ADP-ribosylation factor family AAA_17 PF13207.1 gi|433593047|ref|YP_007282543.1| - 1.8e-05 25.5 0.4 4.4e-05 24.2 0.3 1.9 1 1 0 1 1 1 1 AAA domain FeoB_N PF02421.13 gi|433593047|ref|YP_007282543.1| - 3e-05 23.3 0.1 0.00022 20.5 0.1 2.2 1 1 0 1 1 1 1 Ferrous iron transport protein B AAA_18 PF13238.1 gi|433593047|ref|YP_007282543.1| - 7.9e-05 22.9 0.0 0.00041 20.6 0.0 2.0 1 1 1 2 2 2 1 AAA domain Miro PF08477.8 gi|433593047|ref|YP_007282543.1| - 0.00026 21.4 0.0 0.00069 20.1 0.0 1.7 1 1 0 1 1 1 1 Miro-like protein AAA_22 PF13401.1 gi|433593047|ref|YP_007282543.1| - 0.00029 20.9 0.0 0.00054 20.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain SRPRB PF09439.5 gi|433593047|ref|YP_007282543.1| - 0.00035 19.8 0.0 0.14 11.3 0.0 2.2 2 0 0 2 2 2 2 Signal recognition particle receptor beta subunit NB-ARC PF00931.17 gi|433593047|ref|YP_007282543.1| - 0.00043 19.2 0.0 0.002 17.0 0.0 1.8 2 0 0 2 2 2 1 NB-ARC domain AAA PF00004.24 gi|433593047|ref|YP_007282543.1| - 0.00084 19.5 0.1 0.018 15.2 0.0 2.4 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|433593047|ref|YP_007282543.1| - 0.00087 19.3 0.0 0.0013 18.7 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain Septin PF00735.13 gi|433593047|ref|YP_007282543.1| - 0.00089 18.3 0.0 0.0017 17.4 0.0 1.3 1 1 0 1 1 1 1 Septin Ras PF00071.17 gi|433593047|ref|YP_007282543.1| - 0.0013 18.1 0.0 0.37 10.1 0.0 2.5 2 1 0 2 2 2 1 Ras family Arch_ATPase PF01637.13 gi|433593047|ref|YP_007282543.1| - 0.0029 17.3 0.0 0.13 11.8 0.0 2.1 1 1 0 2 2 2 1 Archaeal ATPase Zeta_toxin PF06414.7 gi|433593047|ref|YP_007282543.1| - 0.0035 16.4 0.0 0.0079 15.3 0.0 1.6 1 1 0 1 1 1 1 Zeta toxin Dynamin_N PF00350.18 gi|433593047|ref|YP_007282543.1| - 0.0036 17.1 0.0 0.25 11.1 0.0 2.5 1 1 0 2 2 2 1 Dynamin family AAA_28 PF13521.1 gi|433593047|ref|YP_007282543.1| - 0.0078 16.1 0.2 0.028 14.3 0.1 1.9 1 1 1 2 2 2 1 AAA domain RNA_helicase PF00910.17 gi|433593047|ref|YP_007282543.1| - 0.0098 16.0 0.0 0.015 15.4 0.0 1.5 1 0 0 1 1 1 1 RNA helicase AAA_19 PF13245.1 gi|433593047|ref|YP_007282543.1| - 0.012 15.2 1.3 0.02 14.6 0.0 1.9 2 1 0 2 2 1 0 Part of AAA domain ABC_tran PF00005.22 gi|433593047|ref|YP_007282543.1| - 0.013 15.8 0.0 0.018 15.3 0.0 1.3 1 0 0 1 1 1 0 ABC transporter AAA_25 PF13481.1 gi|433593047|ref|YP_007282543.1| - 0.014 14.7 0.0 0.027 13.8 0.0 1.5 1 1 0 1 1 1 0 AAA domain cobW PF02492.14 gi|433593047|ref|YP_007282543.1| - 0.015 14.7 0.2 0.71 9.2 0.1 2.4 1 1 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain FMN_bind PF04205.9 gi|433593047|ref|YP_007282543.1| - 0.023 14.8 0.2 0.053 13.6 0.1 1.7 1 0 0 1 1 1 0 FMN-binding domain AAA_14 PF13173.1 gi|433593047|ref|YP_007282543.1| - 0.041 13.7 0.0 0.065 13.1 0.0 1.8 1 1 0 1 1 1 0 AAA domain RuvB_N PF05496.7 gi|433593047|ref|YP_007282543.1| - 0.053 12.5 0.0 0.085 11.8 0.0 1.3 1 0 0 1 1 1 0 Holliday junction DNA helicase ruvB N-terminus NACHT PF05729.7 gi|433593047|ref|YP_007282543.1| - 0.053 13.1 0.0 0.086 12.4 0.0 1.3 1 0 0 1 1 1 0 NACHT domain ArgK PF03308.11 gi|433593047|ref|YP_007282543.1| - 0.054 12.2 0.1 0.84 8.3 0.0 2.6 3 1 0 3 3 3 0 ArgK protein DUF258 PF03193.11 gi|433593047|ref|YP_007282543.1| - 0.061 12.5 0.0 0.1 11.7 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 ATP_bind_1 PF03029.12 gi|433593047|ref|YP_007282543.1| - 0.067 12.7 0.0 5.2 6.5 0.0 3.0 3 1 0 3 3 3 0 Conserved hypothetical ATP binding protein MMR_HSR1_C PF08438.5 gi|433593047|ref|YP_007282543.1| - 0.084 13.1 0.2 0.27 11.4 0.0 1.8 2 0 0 2 2 2 0 GTPase of unknown function C-terminal MobB PF03205.9 gi|433593047|ref|YP_007282543.1| - 0.09 12.4 0.0 0.25 11.0 0.0 1.8 1 1 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B Parvo_NS1 PF01057.12 gi|433593047|ref|YP_007282543.1| - 0.12 11.1 0.0 0.2 10.5 0.0 1.2 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 AAA_24 PF13479.1 gi|433593047|ref|YP_007282543.1| - 0.18 11.3 2.5 0.41 10.2 1.7 1.8 1 1 0 1 1 1 0 AAA domain