#                                                                           --- full sequence ---- --- best 1 domain ---- --- domain number estimation ----
# target name        accession  query name                       accession    E-value  score  bias   E-value  score  bias   exp reg clu  ov env dom rep inc description of target
#------------------- ----------             -------------------- ---------- --------- ------ ----- --------- ------ -----   --- --- --- --- --- --- --- --- ---------------------
PCNA_N	PF00705.13	gi|289594274|ref|YP_003482281.1|	-	2.2e-09	36.8	0.3	8.2e-09	35.0	0.0	2.0	2	0	0	2	2	2	1	Proliferating	cell	nuclear	antigen,	N-terminal	domain
PCNA_C	PF02747.10	gi|289594274|ref|YP_003482281.1|	-	1.1e-05	25.3	0.0	3.7e-05	23.6	0.0	2.0	2	1	0	2	2	2	1	Proliferating	cell	nuclear	antigen,	C-terminal	domain
LHH	PF14411.1	gi|289594280|ref|YP_003482287.1|	-	0.024	14.8	0.5	0.057	13.6	0.4	1.5	1	1	0	1	1	1	0	A	nuclease	of	the	HNH/ENDO	VII	superfamily	with	conserved	LHH
EzrA	PF06160.7	gi|289594280|ref|YP_003482287.1|	-	0.081	11.0	0.1	0.084	11.0	0.1	1.0	1	0	0	1	1	1	0	Septation	ring	formation	regulator,	EzrA
RED_C	PF07807.6	gi|289594281|ref|YP_003482288.1|	-	0.12	12.5	0.1	0.13	12.4	0.1	1.1	1	0	0	1	1	1	0	RED-like	protein	C-terminal	region
DZR	PF12773.2	gi|289594282|ref|YP_003482289.1|	-	0.056	13.2	1.6	0.1	12.4	1.1	1.4	1	0	0	1	1	1	0	Double	zinc	ribbon
zf-ribbon_3	PF13248.1	gi|289594282|ref|YP_003482289.1|	-	0.06	12.5	0.1	0.06	12.5	0.1	2.0	2	0	0	2	2	2	0	zinc-ribbon	domain
Gp37_Gp68	PF07505.6	gi|289594284|ref|YP_003482291.1|	-	1e-93	313.2	0.0	1.2e-93	313.1	0.0	1.0	1	0	0	1	1	1	1	Phage	protein	Gp37/Gp68
DUF4326	PF14216.1	gi|289594286|ref|YP_003482293.1|	-	4.8e-20	71.9	0.3	6.4e-20	71.5	0.2	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4326)
Ca_chan_IQ	PF08763.6	gi|289594288|ref|YP_003482295.1|	-	0.14	11.4	0.6	0.14	11.4	0.4	1.9	3	0	0	3	3	3	0	Voltage	gated	calcium	channel	IQ	domain
TF_Zn_Ribbon	PF08271.7	gi|289594288|ref|YP_003482295.1|	-	0.19	11.0	1.7	0.74	9.1	1.2	2.1	1	1	0	1	1	1	0	TFIIB	zinc-binding
Nuc_deoxyrib_tr	PF05014.10	gi|289594289|ref|YP_003482296.1|	-	3.7e-05	23.5	0.0	5.7e-05	22.9	0.0	1.3	1	0	0	1	1	1	1	Nucleoside	2-deoxyribosyltransferase
ASCH	PF04266.9	gi|289594290|ref|YP_003482297.1|	-	0.0014	18.9	0.0	0.0025	18.1	0.0	1.5	1	1	0	1	1	1	1	ASCH	domain
DUF3850	PF12961.2	gi|289594290|ref|YP_003482297.1|	-	0.0015	18.4	0.3	0.0031	17.4	0.2	1.7	1	1	0	1	1	1	1	Domain	of	Unknown	Function	with	PDB	structure	(DUF3850)
SKG6	PF08693.5	gi|289594291|ref|YP_003482298.1|	-	0.31	10.3	2.6	0.46	9.8	1.8	1.2	1	0	0	1	1	1	0	Transmembrane	alpha-helix	domain
DUF164	PF02591.10	gi|289594292|ref|YP_003482299.1|	-	0.11	12.3	1.7	1.3	8.9	0.0	2.1	2	0	0	2	2	2	0	Putative	zinc	ribbon	domain
DUF4033	PF13225.1	gi|289594292|ref|YP_003482299.1|	-	0.14	11.7	1.6	0.17	11.4	1.1	1.3	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4033)
XPA_N	PF01286.13	gi|289594292|ref|YP_003482299.1|	-	0.26	10.9	2.5	1.1	9.0	0.1	2.4	2	0	0	2	2	2	0	XPA	protein	N-terminal
Agouti	PF05039.7	gi|289594292|ref|YP_003482299.1|	-	0.29	11.5	3.2	0.32	11.3	2.2	1.1	1	0	0	1	1	1	0	Agouti	protein
ZZ	PF00569.12	gi|289594292|ref|YP_003482299.1|	-	1.2	8.7	4.9	6.9	6.3	3.5	1.9	1	1	1	2	2	2	0	Zinc	finger,	ZZ	type
Zn-ribbon_8	PF09723.5	gi|289594293|ref|YP_003482300.1|	-	0.38	10.7	4.0	0.7	9.9	2.8	1.7	1	1	0	1	1	1	0	Zinc	ribbon	domain
CSS-motif	PF12792.2	gi|289594294|ref|YP_003482301.1|	-	6.6e-14	51.7	0.0	3.2e-06	26.6	0.0	2.0	1	1	1	2	2	2	2	CSS	motif	domain	associated	with	EAL
zf-RanBP	PF00641.13	gi|289594294|ref|YP_003482301.1|	-	0.076	12.1	0.5	4.3	6.5	0.0	2.4	2	0	0	2	2	2	0	Zn-finger	in	Ran	binding	protein	and	others
Arteri_Gl	PF00951.13	gi|289594294|ref|YP_003482301.1|	-	0.12	11.9	0.0	0.19	11.3	0.0	1.2	1	0	0	1	1	1	0	Arterivirus	GL	envelope	glycoprotein
zf-primase	PF09329.6	gi|289594295|ref|YP_003482302.1|	-	1.4e-05	24.5	2.5	0.033	13.7	0.1	2.3	2	0	0	2	2	2	2	Primase	zinc	finger
zf-C3Hc3H	PF13891.1	gi|289594295|ref|YP_003482302.1|	-	0.0038	17.2	1.6	0.1	12.6	0.1	2.2	2	0	0	2	2	2	1	Potential	DNA-binding	domain
WRC	PF08879.5	gi|289594295|ref|YP_003482302.1|	-	0.55	9.9	3.0	12	5.6	0.5	2.4	2	0	0	2	2	2	0	WRC
DNA_methylase	PF00145.12	gi|289594296|ref|YP_003482303.1|	-	3.9e-46	157.7	0.0	6.4e-46	157.0	0.0	1.3	1	1	0	1	1	1	1	C-5	cytosine-specific	DNA	methylase
N6_N4_Mtase	PF01555.13	gi|289594298|ref|YP_003482305.1|	-	6.7e-48	163.1	0.0	9.2e-35	120.2	0.0	2.1	2	0	0	2	2	2	2	DNA	methylase
Methyltransf_26	PF13659.1	gi|289594298|ref|YP_003482305.1|	-	1.6e-14	53.9	0.0	1.8e-06	27.9	0.0	2.6	2	0	0	2	2	2	2	Methyltransferase	domain
Methyltransf_15	PF09445.5	gi|289594298|ref|YP_003482305.1|	-	2.9e-05	23.6	1.9	0.011	15.2	0.0	2.6	3	0	0	3	3	3	2	RNA	cap	guanine-N2	methyltransferase
Methyltransf_18	PF12847.2	gi|289594298|ref|YP_003482305.1|	-	0.00036	21.0	0.0	0.0012	19.4	0.0	1.9	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.7	gi|289594298|ref|YP_003482305.1|	-	0.0017	18.8	0.0	1.3	9.5	0.0	2.8	3	0	0	3	3	3	2	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|289594298|ref|YP_003482305.1|	-	0.0017	17.9	0.0	0.0074	15.8	0.0	2.0	2	0	0	2	2	2	1	Methyltransferase	domain
Met_10	PF02475.11	gi|289594298|ref|YP_003482305.1|	-	0.01	15.4	0.0	0.019	14.5	0.0	1.3	1	0	0	1	1	1	0	Met-10+	like-protein
UPF0020	PF01170.13	gi|289594298|ref|YP_003482305.1|	-	0.078	12.5	0.0	4.6	6.7	0.0	2.4	2	0	0	2	2	2	0	Putative	RNA	methylase	family	UPF0020
MethyltransfD12	PF02086.10	gi|289594298|ref|YP_003482305.1|	-	0.14	11.5	0.0	0.29	10.5	0.0	1.4	1	0	0	1	1	1	0	D12	class	N6	adenine-specific	DNA	methyltransferase
Imm37	PF15598.1	gi|289594303|ref|YP_003482310.1|	-	0.015	15.1	0.7	0.02	14.7	0.5	1.1	1	0	0	1	1	1	0	Immunity	protein	37
DUF3991	PF13154.1	gi|289594306|ref|YP_003482313.1|	-	0.063	13.4	0.0	0.088	13.0	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3991)
Peptidase_A24	PF01478.13	gi|289594307|ref|YP_003482314.1|	-	0.047	13.8	0.2	0.054	13.6	0.1	1.1	1	0	0	1	1	1	0	Type	IV	leader	peptidase	family
N6_N4_Mtase	PF01555.13	gi|289594309|ref|YP_003482316.1|	-	9e-31	107.1	0.0	3.1e-19	69.3	0.0	2.2	1	1	1	2	2	2	2	DNA	methylase
ParBc	PF02195.13	gi|289594309|ref|YP_003482316.1|	-	7.9e-11	41.9	0.0	1.8e-10	40.7	0.0	1.6	1	0	0	1	1	1	1	ParB-like	nuclease	domain
Methyltransf_26	PF13659.1	gi|289594309|ref|YP_003482316.1|	-	1e-09	38.4	0.1	1.9e-05	24.6	0.0	2.4	2	0	0	2	2	2	2	Methyltransferase	domain
UPF0020	PF01170.13	gi|289594309|ref|YP_003482316.1|	-	5.5e-07	29.3	0.0	0.0042	16.6	0.0	2.3	2	0	0	2	2	2	2	Putative	RNA	methylase	family	UPF0020
Cons_hypoth95	PF03602.10	gi|289594309|ref|YP_003482316.1|	-	0.0029	17.0	0.0	0.91	8.8	0.0	2.4	2	0	0	2	2	2	2	Conserved	hypothetical	protein	95
Methyltransf_31	PF13847.1	gi|289594309|ref|YP_003482316.1|	-	0.017	14.6	0.0	0.059	12.9	0.0	1.8	2	0	0	2	2	2	0	Methyltransferase	domain
MethyltransfD12	PF02086.10	gi|289594309|ref|YP_003482316.1|	-	0.061	12.7	1.5	0.57	9.5	0.0	2.6	2	1	0	2	2	2	0	D12	class	N6	adenine-specific	DNA	methyltransferase
Methyltransf_11	PF08241.7	gi|289594309|ref|YP_003482316.1|	-	0.1	13.1	0.1	0.38	11.2	0.0	2.0	2	0	0	2	2	2	0	Methyltransferase	domain
Ubie_methyltran	PF01209.13	gi|289594309|ref|YP_003482316.1|	-	0.15	11.1	0.0	0.34	9.9	0.0	1.5	1	0	0	1	1	1	0	ubiE/COQ5	methyltransferase	family
HTH_24	PF13412.1	gi|289594310|ref|YP_003482317.1|	-	0.0028	17.0	0.1	0.007	15.7	0.0	1.7	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
HTH_37	PF13744.1	gi|289594310|ref|YP_003482317.1|	-	0.0084	15.8	0.0	0.019	14.7	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
DUF4129	PF13559.1	gi|289594310|ref|YP_003482317.1|	-	0.015	15.2	0.4	2.8	7.9	0.0	2.4	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4129)
RNaseH_C	PF09293.5	gi|289594310|ref|YP_003482317.1|	-	0.033	14.0	0.3	6.5	6.6	0.0	2.2	2	0	0	2	2	2	0	T4	RNase	H,	C	terminal
HTH_20	PF12840.2	gi|289594310|ref|YP_003482317.1|	-	0.035	13.8	0.0	0.078	12.8	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain
MarR	PF01047.17	gi|289594310|ref|YP_003482317.1|	-	0.038	13.7	0.0	0.064	12.9	0.0	1.4	1	0	0	1	1	1	0	MarR	family
HTH_11	PF08279.7	gi|289594310|ref|YP_003482317.1|	-	0.069	12.8	0.1	0.11	12.1	0.0	1.4	1	0	0	1	1	1	0	HTH	domain
MarR_2	PF12802.2	gi|289594310|ref|YP_003482317.1|	-	0.069	12.8	0.3	0.22	11.2	0.0	1.9	2	0	0	2	2	2	0	MarR	family
HTH_27	PF13463.1	gi|289594310|ref|YP_003482317.1|	-	0.11	12.8	0.0	0.22	11.8	0.0	1.5	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
DUF217	PF02697.9	gi|289594311|ref|YP_003482318.1|	-	2.1e-07	31.0	0.3	1.6e-06	28.2	0.0	2.0	1	1	1	2	2	2	1	Uncharacterized	ACR,	COG1753
Gag_p24	PF00607.15	gi|289594311|ref|YP_003482318.1|	-	0.0031	17.1	0.1	0.0072	15.8	0.0	1.6	2	0	0	2	2	2	1	gag	gene	protein	p24	(core	nucleocapsid	protein)
DUF4168	PF13767.1	gi|289594311|ref|YP_003482318.1|	-	0.0066	17.0	0.1	0.0095	16.5	0.0	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4168)
CorA	PF01544.13	gi|289594311|ref|YP_003482318.1|	-	0.11	11.4	1.2	0.16	11.0	0.5	1.5	1	1	1	2	2	2	0	CorA-like	Mg2+	transporter	protein
HNH	PF01844.18	gi|289594313|ref|YP_003482320.1|	-	1.5e-05	24.7	8.7	2.3e-05	24.1	6.0	1.4	1	0	0	1	1	1	1	HNH	endonuclease
HNH_3	PF13392.1	gi|289594313|ref|YP_003482320.1|	-	0.018	14.4	2.8	0.028	13.8	2.0	1.3	1	0	0	1	1	1	0	HNH	endonuclease
DUF1289	PF06945.8	gi|289594313|ref|YP_003482320.1|	-	0.034	13.6	0.1	0.072	12.5	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1289)
Terminase_6	PF03237.10	gi|289594315|ref|YP_003482322.1|	-	8.5e-10	37.9	0.2	1.7e-09	36.9	0.1	1.6	1	0	0	1	1	1	1	Terminase-like	family
Synaptobrevin	PF00957.16	gi|289594318|ref|YP_003482325.1|	-	0.077	12.6	0.0	0.087	12.4	0.0	1.1	1	0	0	1	1	1	0	Synaptobrevin
Phage_portal	PF04860.7	gi|289594320|ref|YP_003482327.1|	-	3.7e-34	117.9	0.0	5e-34	117.5	0.0	1.1	1	0	0	1	1	1	1	Phage	portal	protein
Phage_Mu_F	PF04233.9	gi|289594321|ref|YP_003482328.1|	-	9.3e-11	42.2	0.0	2.5e-10	40.8	0.0	1.7	1	0	0	1	1	1	1	Phage	Mu	protein	F	like	protein
Cytochrom_B562	PF07361.6	gi|289594321|ref|YP_003482328.1|	-	0.0018	18.6	0.1	0.0042	17.4	0.0	1.6	1	0	0	1	1	1	1	Cytochrome	b562
PPDK_N	PF01326.14	gi|289594321|ref|YP_003482328.1|	-	0.039	13.0	0.2	0.051	12.5	0.1	1.3	1	0	0	1	1	1	0	Pyruvate	phosphate	dikinase,	PEP/pyruvate	binding	domain
Peptidase_U35_2	PF14550.1	gi|289594322|ref|YP_003482329.1|	-	4.1e-23	81.3	0.1	1.1e-22	79.9	0.1	1.8	1	0	0	1	1	1	1	Putative	phage	protease	XkdF
Phage_capsid	PF05065.8	gi|289594323|ref|YP_003482330.1|	-	9.7e-12	44.6	0.8	1.2e-11	44.2	0.6	1.1	1	0	0	1	1	1	1	Phage	capsid	family
DUF1371	PF07115.6	gi|289594323|ref|YP_003482330.1|	-	0.13	12.3	0.0	0.27	11.4	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1371)
CobT	PF06213.7	gi|289594324|ref|YP_003482331.1|	-	1.2	8.1	18.6	1.5	7.8	12.9	1.1	1	0	0	1	1	1	0	Cobalamin	biosynthesis	protein	CobT
Daxx	PF03344.10	gi|289594324|ref|YP_003482331.1|	-	6.7	5.0	14.5	7.5	4.8	10.0	1.1	1	0	0	1	1	1	0	Daxx	Family
Phage_connect_1	PF05135.8	gi|289594325|ref|YP_003482332.1|	-	0.0004	20.5	0.0	0.25	11.5	0.0	2.2	2	0	0	2	2	2	2	Phage	gp6-like	head-tail	connector	protein
Phage_tail_S	PF05069.8	gi|289594328|ref|YP_003482335.1|	-	3e-09	36.7	0.0	3.3e-09	36.6	0.0	1.2	1	0	0	1	1	1	1	Phage	virion	morphogenesis	family
DUF3383	PF11863.3	gi|289594330|ref|YP_003482337.1|	-	2.8e-07	29.5	0.6	0.0053	15.4	0.1	2.3	2	0	0	2	2	2	2	Protein	of	unknown	function	(DUF3383)
Phage_tail_2	PF06199.6	gi|289594331|ref|YP_003482338.1|	-	0.052	13.6	0.1	0.073	13.1	0.1	1.2	1	0	0	1	1	1	0	Phage	major	tail	protein	2
HTH_23	PF13384.1	gi|289594333|ref|YP_003482340.1|	-	5.2e-10	38.6	0.2	8.3e-07	28.4	0.0	2.4	2	0	0	2	2	2	2	Homeodomain-like	domain
HTH_38	PF13936.1	gi|289594333|ref|YP_003482340.1|	-	4e-08	32.6	0.0	0.0043	16.5	0.0	2.3	2	0	0	2	2	2	2	Helix-turn-helix	domain
HTH_28	PF13518.1	gi|289594333|ref|YP_003482340.1|	-	6.3e-08	32.4	1.0	0.0077	16.2	0.1	2.5	2	0	0	2	2	2	2	Helix-turn-helix	domain
HTH_17	PF12728.2	gi|289594333|ref|YP_003482340.1|	-	1.2e-07	31.8	0.0	0.0012	19.1	0.0	2.5	2	0	0	2	2	2	2	Helix-turn-helix	domain
HTH_Tnp_ISL3	PF13542.1	gi|289594333|ref|YP_003482340.1|	-	1.5e-06	27.2	0.1	0.00026	20.0	0.0	2.4	2	0	0	2	2	2	1	Helix-turn-helix	domain	of	transposase	family	ISL3
HNH	PF01844.18	gi|289594333|ref|YP_003482340.1|	-	3.4e-06	26.8	3.4	1.1e-05	25.1	2.3	1.9	1	0	0	1	1	1	1	HNH	endonuclease
HTH_11	PF08279.7	gi|289594333|ref|YP_003482340.1|	-	2.8e-05	23.6	0.0	0.0022	17.5	0.0	2.2	2	0	0	2	2	2	1	HTH	domain
Crp	PF00325.15	gi|289594333|ref|YP_003482340.1|	-	0.00089	18.6	0.0	0.25	10.8	0.0	2.3	2	0	0	2	2	2	1	Bacterial	regulatory	proteins,	crp	family
Sigma70_r4_2	PF08281.7	gi|289594333|ref|YP_003482340.1|	-	0.0016	17.8	0.0	0.15	11.5	0.0	2.3	2	0	0	2	2	2	1	Sigma-70,	region	4
HTH_29	PF13551.1	gi|289594333|ref|YP_003482340.1|	-	0.002	18.2	0.1	0.047	13.8	0.0	2.3	1	1	1	2	2	2	1	Winged	helix-turn	helix
Sigma70_r4	PF04545.11	gi|289594333|ref|YP_003482340.1|	-	0.0032	16.7	0.0	0.11	11.7	0.0	2.5	2	0	0	2	2	2	1	Sigma-70,	region	4
GerE	PF00196.14	gi|289594333|ref|YP_003482340.1|	-	0.0046	16.2	0.0	0.12	11.7	0.0	2.2	2	0	0	2	2	2	1	Bacterial	regulatory	proteins,	luxR	family
HTH_AsnC-type	PF13404.1	gi|289594333|ref|YP_003482340.1|	-	0.0055	16.2	0.0	1.1	8.8	0.0	2.7	3	0	0	3	3	3	1	AsnC-type	helix-turn-helix	domain
HTH_32	PF13565.1	gi|289594333|ref|YP_003482340.1|	-	0.0057	17.4	0.1	0.13	13.0	0.1	2.6	1	1	1	2	2	2	2	Homeodomain-like	domain
DUF1323	PF07037.6	gi|289594333|ref|YP_003482340.1|	-	0.015	15.4	1.4	2.9	8.0	0.0	2.4	2	0	0	2	2	2	0	Putative	transcription	regulator	(DUF1323)
Terminase_5	PF06056.7	gi|289594333|ref|YP_003482340.1|	-	0.024	14.1	0.6	11	5.6	0.0	3.2	3	0	0	3	3	3	0	Putative	ATPase	subunit	of	terminase	(gpP-like)
HTH_24	PF13412.1	gi|289594333|ref|YP_003482340.1|	-	0.052	12.9	0.0	1.2	8.6	0.0	2.2	2	0	0	2	2	2	0	Winged	helix-turn-helix	DNA-binding
Slx4	PF09494.5	gi|289594333|ref|YP_003482340.1|	-	0.068	12.9	1.1	9.9	5.9	0.3	2.4	2	0	0	2	2	2	0	Slx4	endonuclease
HTH_7	PF02796.10	gi|289594333|ref|YP_003482340.1|	-	0.077	12.8	0.0	0.9	9.4	0.0	2.2	2	0	0	2	2	2	0	Helix-turn-helix	domain	of	resolvase
HTH_Tnp_IS630	PF01710.11	gi|289594333|ref|YP_003482340.1|	-	0.1	12.2	0.0	0.26	10.9	0.0	1.6	2	0	0	2	2	2	0	Transposase
4HB_MCP_1	PF12729.2	gi|289594334|ref|YP_003482341.1|	-	0.22	10.8	2.6	0.12	11.7	0.3	1.6	2	0	0	2	2	2	0	Four	helix	bundle	sensory	module	for	signal	transduction
PhageMin_Tail	PF10145.4	gi|289594335|ref|YP_003482342.1|	-	3.8e-11	43.0	9.5	3.8e-11	43.0	6.6	3.3	2	1	1	3	3	3	1	Phage-related	minor	tail	protein
TMP_2	PF06791.8	gi|289594335|ref|YP_003482342.1|	-	0.0023	17.5	3.3	0.0023	17.5	2.3	4.5	3	1	1	4	4	4	1	Prophage	tail	length	tape	measure	protein
DAP3	PF10236.4	gi|289594335|ref|YP_003482342.1|	-	0.028	13.3	0.1	0.043	12.7	0.0	1.3	1	0	0	1	1	1	0	Mitochondrial	ribosomal	death-associated	protein	3
Spc7	PF08317.6	gi|289594335|ref|YP_003482342.1|	-	0.09	11.4	2.5	0.17	10.5	1.7	1.5	1	0	0	1	1	1	0	Spc7	kinetochore	protein
ATG16	PF08614.6	gi|289594335|ref|YP_003482342.1|	-	0.24	11.2	12.2	0.51	10.1	6.5	2.6	2	1	0	2	2	2	0	Autophagy	protein	16	(ATG16)
Phage_base_V	PF04717.7	gi|289594339|ref|YP_003482346.1|	-	0.00013	21.8	0.1	0.00024	20.9	0.1	1.4	1	0	0	1	1	1	1	Phage-related	baseplate	assembly	protein
GPW_gp25	PF04965.9	gi|289594340|ref|YP_003482347.1|	-	0.00059	19.3	0.0	0.00087	18.7	0.0	1.2	1	0	0	1	1	1	1	Gene	25-like	lysozyme
DUF2634	PF10934.3	gi|289594340|ref|YP_003482347.1|	-	0.067	12.9	0.0	0.13	12.0	0.0	1.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2634)
Baseplate_J	PF04865.9	gi|289594341|ref|YP_003482348.1|	-	5.2e-16	58.7	2.9	1.8e-15	56.9	1.2	2.2	2	1	0	2	2	2	1	Baseplate	J-like	protein
DUF2313	PF10076.4	gi|289594342|ref|YP_003482349.1|	-	0.00056	19.3	0.1	0.00093	18.6	0.0	1.3	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	bacteria	(DUF2313)
DUF3375	PF11855.3	gi|289594342|ref|YP_003482349.1|	-	0.014	14.1	0.4	0.023	13.4	0.3	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3375)
DUF2612	PF11041.3	gi|289594342|ref|YP_003482349.1|	-	0.052	13.1	0.2	3.9	7.0	0.0	2.2	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2612)
Phage_integrase	PF00589.17	gi|289594347|ref|YP_003482354.1|	-	2.4e-16	59.8	0.0	3.8e-16	59.2	0.0	1.3	1	1	0	1	1	1	1	Phage	integrase	family
HTH_IclR	PF09339.5	gi|289594351|ref|YP_003482358.1|	-	0.00033	20.1	0.0	0.0004	19.9	0.0	1.1	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_20	PF12840.2	gi|289594351|ref|YP_003482358.1|	-	0.003	17.3	0.0	0.0042	16.8	0.0	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_AsnC-type	PF13404.1	gi|289594351|ref|YP_003482358.1|	-	0.015	14.8	0.0	0.019	14.4	0.0	1.2	1	0	0	1	1	1	0	AsnC-type	helix-turn-helix	domain
HTH_11	PF08279.7	gi|289594351|ref|YP_003482358.1|	-	0.016	14.8	0.0	0.02	14.5	0.0	1.2	1	0	0	1	1	1	0	HTH	domain
HTH_24	PF13412.1	gi|289594351|ref|YP_003482358.1|	-	0.064	12.6	0.0	0.079	12.3	0.0	1.2	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
GATase_2	PF00310.16	gi|289594353|ref|YP_003482360.1|	-	4.5e-08	32.1	0.1	2.7e-07	29.6	0.0	1.9	1	1	1	2	2	2	1	Glutamine	amidotransferases	class-II
GATase_6	PF13522.1	gi|289594353|ref|YP_003482360.1|	-	7.7e-07	29.1	0.0	1.1e-06	28.5	0.0	1.3	1	0	0	1	1	1	1	Glutamine	amidotransferase	domain
GATase_4	PF13230.1	gi|289594353|ref|YP_003482360.1|	-	6.5e-05	21.7	0.0	0.0001	21.1	0.0	1.3	1	0	0	1	1	1	1	Glutamine	amidotransferases	class-II
PIN	PF01850.16	gi|289594356|ref|YP_003482363.1|	-	4e-15	56.2	0.1	4.7e-15	55.9	0.1	1.0	1	0	0	1	1	1	1	PIN	domain
PIN_2	PF10130.4	gi|289594356|ref|YP_003482363.1|	-	8.2e-07	29.1	0.0	9.9e-07	28.8	0.0	1.1	1	0	0	1	1	1	1	PIN	domain
PIN_3	PF13470.1	gi|289594356|ref|YP_003482363.1|	-	0.0056	17.3	0.1	0.0066	17.1	0.1	1.3	1	0	0	1	1	1	1	PIN	domain
Phage_integrase	PF00589.17	gi|289594357|ref|YP_003482364.1|	-	2.3e-21	76.1	0.0	2.9e-21	75.8	0.0	1.1	1	0	0	1	1	1	1	Phage	integrase	family
CbiA	PF01656.18	gi|289594358|ref|YP_003482365.1|	-	7.2e-28	97.3	0.0	8.4e-28	97.1	0.0	1.1	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
MipZ	PF09140.6	gi|289594358|ref|YP_003482365.1|	-	1.1e-10	41.0	0.8	9.2e-07	28.1	0.1	2.2	1	1	0	2	2	2	2	ATPase	MipZ
AAA_31	PF13614.1	gi|289594358|ref|YP_003482365.1|	-	4.5e-08	33.1	0.0	1.2e-07	31.8	0.0	1.7	1	1	0	1	1	1	1	AAA	domain
Fer4_NifH	PF00142.13	gi|289594358|ref|YP_003482365.1|	-	1.3e-06	27.8	0.3	9.6e-05	21.6	0.0	2.2	2	1	0	2	2	2	1	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
YhjQ	PF06564.7	gi|289594358|ref|YP_003482365.1|	-	1.8e-06	27.5	0.3	2.9e-05	23.5	0.2	2.1	1	1	0	1	1	1	1	YhjQ	protein
ArsA_ATPase	PF02374.10	gi|289594358|ref|YP_003482365.1|	-	0.00012	21.1	1.1	0.00066	18.8	0.3	2.5	1	1	1	2	2	2	1	Anion-transporting	ATPase
ATP_bind_1	PF03029.12	gi|289594358|ref|YP_003482365.1|	-	0.0042	16.6	0.2	0.23	10.9	0.0	2.3	2	0	0	2	2	2	1	Conserved	hypothetical	ATP	binding	protein
VirC1	PF07015.6	gi|289594358|ref|YP_003482365.1|	-	0.0076	15.3	3.3	0.16	11.0	0.1	3.3	2	1	2	4	4	4	1	VirC1	protein
ArgK	PF03308.11	gi|289594358|ref|YP_003482365.1|	-	0.034	12.9	0.1	0.059	12.1	0.1	1.4	1	0	0	1	1	1	0	ArgK	protein
AAA_16	PF13191.1	gi|289594358|ref|YP_003482365.1|	-	0.048	13.6	0.2	0.14	12.1	0.1	1.7	1	1	0	2	2	2	0	AAA	ATPase	domain
Cep57_MT_bd	PF06657.8	gi|289594358|ref|YP_003482365.1|	-	0.2	11.6	1.5	6.4	6.7	1.2	2.5	2	2	0	2	2	2	0	Centrosome	microtubule-binding	domain	of	Cep57
TEX19	PF15553.1	gi|289594359|ref|YP_003482366.1|	-	0.11	12.2	4.3	0.14	12.0	3.0	1.2	1	0	0	1	1	1	0	Testis-expressed	protein	19
DUF4614	PF15391.1	gi|289594359|ref|YP_003482366.1|	-	0.19	11.5	6.2	0.24	11.1	4.3	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4614)
Bul1_C	PF04426.7	gi|289594359|ref|YP_003482366.1|	-	0.24	10.5	3.4	0.3	10.2	2.4	1.1	1	0	0	1	1	1	0	Bul1	C	terminus
CDC45	PF02724.9	gi|289594359|ref|YP_003482366.1|	-	0.28	9.1	8.4	0.27	9.2	5.8	1.1	1	0	0	1	1	1	0	CDC45-like	protein
ATP11	PF06644.6	gi|289594359|ref|YP_003482366.1|	-	0.52	9.7	3.8	0.6	9.5	2.6	1.1	1	0	0	1	1	1	0	ATP11	protein
TATR	PF03430.8	gi|289594359|ref|YP_003482366.1|	-	0.64	8.5	4.0	0.75	8.3	2.8	1.1	1	0	0	1	1	1	0	Trans-activating	transcriptional	regulator
Pox_RNA_Pol_19	PF05320.7	gi|289594359|ref|YP_003482366.1|	-	1.2	8.8	8.9	1.6	8.4	6.1	1.2	1	0	0	1	1	1	0	Poxvirus	DNA-directed	RNA	polymerase	19	kDa	subunit
eIF-3c_N	PF05470.7	gi|289594359|ref|YP_003482366.1|	-	1.4	6.8	8.0	1.6	6.7	5.5	1.0	1	0	0	1	1	1	0	Eukaryotic	translation	initiation	factor	3	subunit	8	N-terminus
Apt1	PF10351.4	gi|289594359|ref|YP_003482366.1|	-	6.1	5.5	10.1	6.7	5.4	7.0	1.1	1	0	0	1	1	1	0	Golgi-body	localisation	protein	domain
YqfQ	PF14181.1	gi|289594359|ref|YP_003482366.1|	-	6.6	6.7	7.9	9.3	6.2	5.5	1.2	1	0	0	1	1	1	0	YqfQ-like	protein
FAM176	PF14851.1	gi|289594359|ref|YP_003482366.1|	-	7.5	6.2	8.3	10	5.7	5.7	1.2	1	0	0	1	1	1	0	FAM176	family
DUF4512	PF14975.1	gi|289594359|ref|YP_003482366.1|	-	9.8	7.0	6.8	16	6.4	4.7	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4512)
Sporozoite_P67	PF05642.6	gi|289594359|ref|YP_003482366.1|	-	9.8	3.8	12.1	12	3.5	8.4	1.1	1	0	0	1	1	1	0	Sporozoite	P67	surface	antigen
TrmB	PF01978.14	gi|289594363|ref|YP_003482370.1|	-	5.8e-05	22.7	0.0	6.7e-05	22.5	0.0	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_17	PF12728.2	gi|289594363|ref|YP_003482370.1|	-	0.0016	18.6	0.5	0.0025	18.0	0.0	1.6	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_24	PF13412.1	gi|289594363|ref|YP_003482370.1|	-	0.0052	16.1	0.1	0.0077	15.6	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_10	PF04967.7	gi|289594363|ref|YP_003482370.1|	-	0.0066	16.0	0.0	0.0096	15.4	0.0	1.3	1	0	0	1	1	1	1	HTH	DNA	binding	domain
HTH_28	PF13518.1	gi|289594363|ref|YP_003482370.1|	-	0.0079	16.1	0.0	0.012	15.6	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
EAP30	PF04157.11	gi|289594363|ref|YP_003482370.1|	-	0.011	14.9	0.0	0.013	14.7	0.0	1.1	1	0	0	1	1	1	0	EAP30/Vps36	family
Sigma70_r4	PF04545.11	gi|289594363|ref|YP_003482370.1|	-	0.028	13.7	0.0	0.042	13.1	0.0	1.3	1	0	0	1	1	1	0	Sigma-70,	region	4
HTH_IclR	PF09339.5	gi|289594363|ref|YP_003482370.1|	-	0.028	13.9	0.0	0.038	13.5	0.0	1.2	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
HTH_20	PF12840.2	gi|289594363|ref|YP_003482370.1|	-	0.089	12.6	0.0	0.11	12.2	0.0	1.2	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_23	PF13384.1	gi|289594363|ref|YP_003482370.1|	-	0.089	12.4	0.0	0.13	11.9	0.0	1.2	1	0	0	1	1	1	0	Homeodomain-like	domain
MarR_2	PF12802.2	gi|289594363|ref|YP_003482370.1|	-	0.092	12.4	0.0	0.12	12.0	0.0	1.2	1	0	0	1	1	1	0	MarR	family
PadR	PF03551.9	gi|289594364|ref|YP_003482371.1|	-	1.4e-10	40.8	0.1	2.3e-10	40.0	0.1	1.4	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
HTH_45	PF14947.1	gi|289594364|ref|YP_003482371.1|	-	0.0015	18.3	0.0	0.0066	16.2	0.0	1.9	2	0	0	2	2	2	1	Winged	helix-turn-helix
HxlR	PF01638.12	gi|289594364|ref|YP_003482371.1|	-	0.047	13.3	0.0	0.086	12.4	0.0	1.4	1	0	0	1	1	1	0	HxlR-like	helix-turn-helix
zinc_ribbon_5	PF13719.1	gi|289594364|ref|YP_003482371.1|	-	0.054	13.0	0.1	0.09	12.3	0.1	1.4	1	0	0	1	1	1	0	zinc-ribbon	domain
DUF1495	PF07381.6	gi|289594364|ref|YP_003482371.1|	-	0.059	13.0	0.0	0.11	12.1	0.0	1.4	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain	(DUF1495)
zinc_ribbon_4	PF13717.1	gi|289594364|ref|YP_003482371.1|	-	0.12	12.0	0.1	0.21	11.3	0.1	1.4	1	0	0	1	1	1	0	zinc-ribbon	domain
HNH	PF01844.18	gi|289594365|ref|YP_003482372.1|	-	8.4e-06	25.5	4.7	8.4e-06	25.5	3.3	1.9	2	1	0	2	2	2	1	HNH	endonuclease
HNH_3	PF13392.1	gi|289594365|ref|YP_003482372.1|	-	0.00043	19.6	1.6	0.00043	19.6	1.1	1.6	2	0	0	2	2	2	1	HNH	endonuclease
Lar_restr_allev	PF14354.1	gi|289594365|ref|YP_003482372.1|	-	0.027	14.7	1.1	0.088	13.1	0.8	1.8	1	1	1	2	2	2	0	Restriction	alleviation	protein	Lar
GCOM2	PF15328.1	gi|289594366|ref|YP_003482373.1|	-	0.061	13.0	0.3	0.085	12.5	0.2	1.2	1	0	0	1	1	1	0	Putative	GRINL1B	complex	locus	protein	2
Nop14	PF04147.7	gi|289594366|ref|YP_003482373.1|	-	7.3	4.3	9.7	8.2	4.2	6.7	1.0	1	0	0	1	1	1	0	Nop14-like	family