# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- Cdc6_C PF09079.6 gi|289937460|ref|YP_003482062.1| - 9.5e-17 60.5 0.0 3.3e-16 58.7 0.0 2.0 1 0 0 1 1 1 1 CDC6, C terminal AAA_22 PF13401.1 gi|289937460|ref|YP_003482062.1| - 3.2e-12 46.7 0.2 3.9e-11 43.2 0.0 2.2 2 1 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|289937460|ref|YP_003482062.1| - 2e-10 40.9 1.8 6e-09 36.1 0.0 2.8 2 2 0 2 2 2 1 AAA ATPase domain AAA PF00004.24 gi|289937460|ref|YP_003482062.1| - 9.4e-07 29.0 0.0 2e-06 28.0 0.0 1.6 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) NACHT PF05729.7 gi|289937460|ref|YP_003482062.1| - 1.5e-06 28.0 0.0 4.4e-06 26.4 0.0 1.7 2 0 0 2 2 2 1 NACHT domain Arch_ATPase PF01637.13 gi|289937460|ref|YP_003482062.1| - 3.2e-06 27.0 0.2 1.4e-05 24.9 0.0 2.0 2 0 0 2 2 2 1 Archaeal ATPase NB-ARC PF00931.17 gi|289937460|ref|YP_003482062.1| - 3.9e-05 22.6 0.0 6.6e-05 21.9 0.0 1.4 1 0 0 1 1 1 1 NB-ARC domain AAA_32 PF13654.1 gi|289937460|ref|YP_003482062.1| - 0.00073 18.3 0.1 0.28 9.7 0.0 2.2 2 0 0 2 2 2 2 AAA domain RNA_helicase PF00910.17 gi|289937460|ref|YP_003482062.1| - 0.0012 19.0 0.0 0.0028 17.7 0.0 1.7 1 0 0 1 1 1 1 RNA helicase ChuX_HutX PF06228.8 gi|289937460|ref|YP_003482062.1| - 0.0015 17.9 0.0 0.006 15.9 0.0 1.8 2 0 0 2 2 2 1 Haem utilisation ChuX/HutX DUF815 PF05673.8 gi|289937460|ref|YP_003482062.1| - 0.0015 17.4 0.0 0.003 16.5 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_14 PF13173.1 gi|289937460|ref|YP_003482062.1| - 0.0022 17.8 0.0 0.0046 16.8 0.0 1.6 1 0 0 1 1 1 1 AAA domain DEAD PF00270.24 gi|289937460|ref|YP_003482062.1| - 0.0023 17.4 0.2 0.12 11.8 0.0 2.5 2 1 0 2 2 2 1 DEAD/DEAH box helicase AAA_25 PF13481.1 gi|289937460|ref|YP_003482062.1| - 0.0024 17.2 0.0 0.0055 16.1 0.0 1.6 1 0 0 1 1 1 1 AAA domain T2SE PF00437.15 gi|289937460|ref|YP_003482062.1| - 0.0077 15.1 0.0 0.013 14.4 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_18 PF13238.1 gi|289937460|ref|YP_003482062.1| - 0.012 15.9 0.0 0.041 14.1 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_17 PF13207.1 gi|289937460|ref|YP_003482062.1| - 0.012 16.4 1.0 0.049 14.4 0.7 2.3 1 1 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|289937460|ref|YP_003482062.1| - 0.038 13.4 0.1 0.28 10.5 0.0 2.3 2 1 1 3 3 3 0 AAA-like domain Zeta_toxin PF06414.7 gi|289937460|ref|YP_003482062.1| - 0.043 12.9 0.0 0.26 10.3 0.0 2.1 2 0 0 2 2 2 0 Zeta toxin AAA_5 PF07728.9 gi|289937460|ref|YP_003482062.1| - 0.052 13.2 0.0 0.14 11.9 0.0 1.9 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) PBP_like_2 PF12849.2 gi|289937461|ref|YP_003482063.1| - 6.5e-25 88.1 0.2 8.3e-25 87.8 0.2 1.1 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_11 PF13531.1 gi|289937461|ref|YP_003482063.1| - 1.1e-08 34.9 0.0 1.4e-07 31.3 0.0 2.0 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein PBP_like PF12727.2 gi|289937461|ref|YP_003482063.1| - 0.01 14.7 0.0 0.025 13.5 0.0 1.6 1 0 0 1 1 1 0 PBP superfamily domain BPD_transp_1 PF00528.17 gi|289937462|ref|YP_003482064.1| - 3.8e-14 52.6 14.9 3.8e-14 52.6 10.3 1.5 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component YjbE PF11106.3 gi|289937462|ref|YP_003482064.1| - 2.6 8.0 8.0 1.8 8.5 3.9 2.0 1 1 0 1 1 1 0 Exopolysaccharide production protein YjbE ABC_tran PF00005.22 gi|289937463|ref|YP_003482065.1| - 2.6e-34 118.4 0.0 4.2e-34 117.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|289937463|ref|YP_003482065.1| - 1.4e-12 48.2 0.0 2.1e-06 27.8 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|289937463|ref|YP_003482065.1| - 4.4e-06 26.7 0.1 7.1e-06 26.1 0.1 1.3 1 0 0 1 1 1 1 AAA ATPase domain AAA_17 PF13207.1 gi|289937463|ref|YP_003482065.1| - 1e-05 26.3 0.2 2.2e-05 25.2 0.1 1.9 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|289937463|ref|YP_003482065.1| - 4.4e-05 22.8 0.0 7.2e-05 22.1 0.0 1.3 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain MMR_HSR1 PF01926.18 gi|289937463|ref|YP_003482065.1| - 4.8e-05 23.2 0.0 0.00014 21.8 0.0 1.8 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_29 PF13555.1 gi|289937463|ref|YP_003482065.1| - 0.00028 20.3 0.0 0.00064 19.2 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain MobB PF03205.9 gi|289937463|ref|YP_003482065.1| - 0.00029 20.5 0.2 0.032 13.9 0.0 2.4 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_18 PF13238.1 gi|289937463|ref|YP_003482065.1| - 0.00032 21.0 0.0 0.0015 18.8 0.0 2.0 2 1 0 2 2 2 1 AAA domain AAA_10 PF12846.2 gi|289937463|ref|YP_003482065.1| - 0.00045 19.7 0.1 0.066 12.6 0.0 2.2 2 1 0 2 2 2 1 AAA-like domain SbcCD_C PF13558.1 gi|289937463|ref|YP_003482065.1| - 0.00054 19.8 0.5 0.0073 16.1 0.3 2.3 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit DUF258 PF03193.11 gi|289937463|ref|YP_003482065.1| - 0.00082 18.5 0.0 0.0016 17.6 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_22 PF13401.1 gi|289937463|ref|YP_003482065.1| - 0.0017 18.5 0.1 0.0056 16.8 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|289937463|ref|YP_003482065.1| - 0.0038 16.6 0.3 0.01 15.2 0.0 1.9 2 1 0 2 2 2 1 AAA domain DUF2813 PF11398.3 gi|289937463|ref|YP_003482065.1| - 0.0098 15.0 0.0 0.031 13.3 0.0 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF2813) AAA_15 PF13175.1 gi|289937463|ref|YP_003482065.1| - 0.029 13.4 0.0 6.1 5.7 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain AAA_33 PF13671.1 gi|289937463|ref|YP_003482065.1| - 0.031 14.1 0.1 0.063 13.1 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|289937463|ref|YP_003482065.1| - 0.035 13.9 0.0 0.085 12.7 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.1 gi|289937463|ref|YP_003482065.1| - 0.041 13.6 0.1 9.3 6.0 0.0 2.5 2 0 0 2 2 2 0 Part of AAA domain AAA_28 PF13521.1 gi|289937463|ref|YP_003482065.1| - 0.057 13.3 0.0 0.14 12.1 0.0 1.8 1 0 0 1 1 1 0 AAA domain ArgK PF03308.11 gi|289937463|ref|YP_003482065.1| - 0.06 12.1 0.1 0.15 10.8 0.0 1.7 2 0 0 2 2 2 0 ArgK protein AAA_24 PF13479.1 gi|289937463|ref|YP_003482065.1| - 0.069 12.7 0.0 0.084 12.4 0.0 1.3 1 1 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|289937463|ref|YP_003482065.1| - 0.14 11.8 0.2 0.37 10.4 0.1 1.8 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) TOBE PF03459.12 gi|289937464|ref|YP_003482066.1| - 2.9e-15 56.1 2.5 4.6e-14 52.2 0.1 2.8 2 1 0 2 2 2 1 TOBE domain HTH_1 PF00126.22 gi|289937464|ref|YP_003482066.1| - 2.6e-06 27.0 0.1 6.2e-06 25.8 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family CALCOCO1 PF07888.6 gi|289937464|ref|YP_003482066.1| - 0.04 12.2 0.1 0.04 12.2 0.0 1.1 1 0 0 1 1 1 0 Calcium binding and coiled-coil domain (CALCOCO1) like Inhibitor_I78 PF11720.3 gi|289937464|ref|YP_003482066.1| - 0.078 12.7 1.2 0.19 11.4 0.2 2.1 2 0 0 2 2 2 0 Peptidase inhibitor I78 family He_PIG PF05345.7 gi|289937464|ref|YP_003482066.1| - 0.28 11.2 2.0 4.2 7.4 0.1 2.5 1 1 1 2 2 2 0 Putative Ig domain CbiA PF01656.18 gi|289937465|ref|YP_003482067.1| - 2.8e-18 66.0 0.0 4e-18 65.5 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain YhjQ PF06564.7 gi|289937465|ref|YP_003482067.1| - 1.4e-06 27.8 0.0 1.9e-06 27.4 0.0 1.2 1 0 0 1 1 1 1 YhjQ protein AAA_31 PF13614.1 gi|289937465|ref|YP_003482067.1| - 2.4e-06 27.5 0.0 8.9e-06 25.7 0.0 1.8 1 1 0 1 1 1 1 AAA domain ATP_bind_1 PF03029.12 gi|289937465|ref|YP_003482067.1| - 0.00015 21.4 0.0 0.061 12.8 0.0 2.3 2 0 0 2 2 2 2 Conserved hypothetical ATP binding protein MipZ PF09140.6 gi|289937465|ref|YP_003482067.1| - 0.00039 19.5 0.1 0.052 12.6 0.0 2.7 3 0 0 3 3 3 1 ATPase MipZ ArsA_ATPase PF02374.10 gi|289937465|ref|YP_003482067.1| - 0.00062 18.9 0.2 0.0014 17.7 0.1 1.7 2 1 0 2 2 2 1 Anion-transporting ATPase ArgK PF03308.11 gi|289937465|ref|YP_003482067.1| - 0.025 13.3 0.1 0.038 12.7 0.0 1.2 1 0 0 1 1 1 0 ArgK protein Trypan_PARP PF05887.6 gi|289937466|ref|YP_003482068.1| - 0.00077 19.2 24.9 0.0013 18.5 17.3 1.4 1 0 0 1 1 1 1 Procyclic acidic repetitive protein (PARP) Neisseria_TspB PF05616.8 gi|289937466|ref|YP_003482068.1| - 2.1 6.5 7.5 2 6.6 5.2 1.1 1 0 0 1 1 1 0 Neisseria meningitidis TspB protein Peptidase_S9 PF00326.16 gi|289937467|ref|YP_003482069.1| - 7.5e-33 113.5 1.1 1.1e-32 113.0 0.8 1.2 1 0 0 1 1 1 1 Prolyl oligopeptidase family DPPIV_N PF00930.16 gi|289937467|ref|YP_003482069.1| - 3e-09 35.9 0.0 1.2e-07 30.6 0.0 2.4 2 0 0 2 2 2 1 Dipeptidyl peptidase IV (DPP IV) N-terminal region PD40 PF07676.7 gi|289937467|ref|YP_003482069.1| - 4.6e-08 32.5 9.4 0.003 17.1 0.1 5.2 5 0 0 5 5 5 3 WD40-like Beta Propeller Repeat Abhydrolase_5 PF12695.2 gi|289937467|ref|YP_003482069.1| - 5.5e-08 32.6 0.6 1.1e-07 31.7 0.2 1.6 2 0 0 2 2 2 1 Alpha/beta hydrolase family Peptidase_S15 PF02129.13 gi|289937467|ref|YP_003482069.1| - 8.1e-08 32.0 2.0 6.6e-06 25.7 0.4 2.3 1 1 1 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) DLH PF01738.13 gi|289937467|ref|YP_003482069.1| - 2.6e-06 26.8 0.9 8.2e-05 21.9 0.6 2.2 1 1 0 1 1 1 1 Dienelactone hydrolase family Esterase PF00756.15 gi|289937467|ref|YP_003482069.1| - 0.026 13.9 0.0 0.041 13.3 0.0 1.4 1 0 0 1 1 1 0 Putative esterase PQQ_2 PF13360.1 gi|289937467|ref|YP_003482069.1| - 0.035 13.5 0.0 0.071 12.5 0.0 1.5 1 0 0 1 1 1 0 PQQ-like domain Abhydrolase_2 PF02230.11 gi|289937467|ref|YP_003482069.1| - 0.23 10.8 0.0 0.36 10.2 0.0 1.3 1 0 0 1 1 1 0 Phospholipase/Carboxylesterase AAA_16 PF13191.1 gi|289937468|ref|YP_003482070.1| - 2.7e-11 43.8 0.0 3.2e-11 43.5 0.0 1.1 1 0 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|289937468|ref|YP_003482070.1| - 9.5e-07 29.0 0.0 1.4e-06 28.4 0.0 1.2 1 0 0 1 1 1 1 AAA domain Sigma54_activat PF00158.21 gi|289937468|ref|YP_003482070.1| - 4.7e-05 22.9 0.0 6e-05 22.5 0.0 1.1 1 0 0 1 1 1 1 Sigma-54 interaction domain T2SE PF00437.15 gi|289937468|ref|YP_003482070.1| - 0.00014 20.8 0.0 0.00015 20.8 0.0 1.1 1 0 0 1 1 1 1 Type II/IV secretion system protein Mg_chelatase PF01078.16 gi|289937468|ref|YP_003482070.1| - 0.00016 20.8 0.0 0.00019 20.6 0.0 1.1 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI FtsK_SpoIIIE PF01580.13 gi|289937468|ref|YP_003482070.1| - 0.0005 19.5 0.0 0.00061 19.3 0.0 1.2 1 0 0 1 1 1 1 FtsK/SpoIIIE family DUF815 PF05673.8 gi|289937468|ref|YP_003482070.1| - 0.0011 17.9 0.0 0.0012 17.8 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF815) ATP-synt_ab PF00006.20 gi|289937468|ref|YP_003482070.1| - 0.0021 17.5 0.0 0.0028 17.1 0.0 1.1 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain AAA_23 PF13476.1 gi|289937468|ref|YP_003482070.1| - 0.0051 17.1 0.0 0.0057 17.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain TrwB_AAD_bind PF10412.4 gi|289937468|ref|YP_003482070.1| - 0.0095 14.5 0.0 0.012 14.2 0.0 1.1 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain DUF87 PF01935.12 gi|289937468|ref|YP_003482070.1| - 0.0098 15.7 0.0 0.013 15.3 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF87 cobW PF02492.14 gi|289937468|ref|YP_003482070.1| - 0.011 15.2 0.0 0.014 14.8 0.0 1.2 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain ResIII PF04851.10 gi|289937468|ref|YP_003482070.1| - 0.012 15.4 0.0 0.018 14.8 0.0 1.3 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit NB-ARC PF00931.17 gi|289937468|ref|YP_003482070.1| - 0.012 14.4 0.0 0.013 14.3 0.0 1.1 1 0 0 1 1 1 0 NB-ARC domain AAA_17 PF13207.1 gi|289937468|ref|YP_003482070.1| - 0.014 16.1 0.2 0.06 14.1 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.1 gi|289937468|ref|YP_003482070.1| - 0.016 15.5 0.0 0.021 15.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA PF00004.24 gi|289937468|ref|YP_003482070.1| - 0.016 15.4 0.0 0.025 14.7 0.0 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Zeta_toxin PF06414.7 gi|289937468|ref|YP_003482070.1| - 0.017 14.1 0.0 0.02 13.9 0.0 1.2 1 0 0 1 1 1 0 Zeta toxin ABC_tran PF00005.22 gi|289937468|ref|YP_003482070.1| - 0.019 15.2 0.0 0.025 14.8 0.0 1.3 1 0 0 1 1 1 0 ABC transporter NACHT PF05729.7 gi|289937468|ref|YP_003482070.1| - 0.028 14.0 0.0 0.037 13.6 0.0 1.2 1 0 0 1 1 1 0 NACHT domain Miro PF08477.8 gi|289937468|ref|YP_003482070.1| - 0.035 14.5 0.0 0.048 14.1 0.0 1.3 1 0 0 1 1 1 0 Miro-like protein PhoH PF02562.11 gi|289937468|ref|YP_003482070.1| - 0.041 13.1 0.0 0.048 12.8 0.0 1.1 1 0 0 1 1 1 0 PhoH-like protein IstB_IS21 PF01695.12 gi|289937468|ref|YP_003482070.1| - 0.052 12.9 0.0 0.062 12.7 0.0 1.2 1 0 0 1 1 1 0 IstB-like ATP binding protein DEAD PF00270.24 gi|289937468|ref|YP_003482070.1| - 0.053 13.0 0.0 0.056 12.9 0.0 1.1 1 0 0 1 1 1 0 DEAD/DEAH box helicase PIF1 PF05970.9 gi|289937468|ref|YP_003482070.1| - 0.062 12.2 0.0 0.067 12.1 0.0 1.1 1 0 0 1 1 1 0 PIF1-like helicase AAA_13 PF13166.1 gi|289937468|ref|YP_003482070.1| - 0.11 10.9 0.0 0.12 10.7 0.0 1.1 1 0 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|289937468|ref|YP_003482070.1| - 0.12 11.8 0.0 0.14 11.5 0.0 1.2 1 0 0 1 1 1 0 AAA-like domain MFS_1 PF07690.11 gi|289937469|ref|YP_003482071.1| - 9.7e-48 162.6 35.6 4.6e-27 94.6 12.8 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily OATP PF03137.15 gi|289937469|ref|YP_003482071.1| - 0.0049 14.9 3.6 0.14 10.1 0.2 2.5 1 1 1 2 2 2 2 Organic Anion Transporter Polypeptide (OATP) family Sugar_tr PF00083.19 gi|289937469|ref|YP_003482071.1| - 0.071 11.6 21.5 0.16 10.5 1.3 2.9 2 1 0 2 2 2 0 Sugar (and other) transporter US22 PF02393.11 gi|289937469|ref|YP_003482071.1| - 0.15 12.1 2.0 0.2 11.6 0.4 1.9 1 1 1 2 2 2 0 US22 like DUF3042 PF11240.3 gi|289937469|ref|YP_003482071.1| - 0.16 11.8 7.6 12 5.7 0.2 4.6 4 0 0 4 4 4 0 Protein of unknown function (DUF3042) DUF2109 PF09882.4 gi|289937469|ref|YP_003482071.1| - 0.38 10.7 5.8 0.61 10.0 0.3 3.0 2 0 0 2 2 2 0 Predicted membrane protein (DUF2109) MFS_1 PF07690.11 gi|289937470|ref|YP_003482072.1| - 4.8e-27 94.5 13.1 5.9e-27 94.2 9.1 1.1 1 0 0 1 1 1 1 Major Facilitator Superfamily MFS_3 PF05977.8 gi|289937470|ref|YP_003482072.1| - 0.00019 19.7 2.0 0.00021 19.5 1.4 1.0 1 0 0 1 1 1 1 Transmembrane secretion effector Sugar_tr PF00083.19 gi|289937470|ref|YP_003482072.1| - 0.00058 18.5 12.6 0.00081 18.0 8.7 1.2 1 0 0 1 1 1 1 Sugar (and other) transporter TRI12 PF06609.8 gi|289937470|ref|YP_003482072.1| - 0.0082 14.3 3.3 0.009 14.2 2.3 1.2 1 0 0 1 1 1 1 Fungal trichothecene efflux pump (TRI12) DUF3311 PF11755.3 gi|289937470|ref|YP_003482072.1| - 0.6 9.6 9.8 0.23 10.9 0.2 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF3311) Halogen_Hydrol PF10112.4 gi|289937470|ref|YP_003482072.1| - 0.6 9.4 0.0 0.6 9.4 0.0 2.2 3 0 0 3 3 3 0 5-bromo-4-chloroindolyl phosphate hydrolysis protein OATP PF03137.15 gi|289937470|ref|YP_003482072.1| - 0.86 7.5 7.4 0.89 7.5 1.2 2.3 1 1 0 2 2 2 0 Organic Anion Transporter Polypeptide (OATP) family MFS_2 PF13347.1 gi|289937470|ref|YP_003482072.1| - 1.2 7.4 16.1 0.0051 15.2 2.9 2.0 1 1 1 2 2 2 0 MFS/sugar transport protein Gly-zipper_OmpA PF13436.1 gi|289937470|ref|YP_003482072.1| - 2.8 7.6 5.3 0.58 9.8 0.2 2.0 1 1 1 2 2 2 0 Glycine-zipper containing OmpA-like membrane domain OrfB_IS605 PF01385.14 gi|289937471|ref|YP_003482073.1| - 8.8e-48 162.6 0.0 1.2e-47 162.2 0.0 1.1 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|289937471|ref|YP_003482073.1| - 1.2e-21 76.1 1.4 1.2e-21 76.1 1.0 1.9 2 0 0 2 2 2 1 Putative transposase DNA-binding domain Ribosomal_L37ae PF01780.14 gi|289937471|ref|YP_003482073.1| - 0.042 13.7 0.8 0.12 12.2 0.5 1.7 1 0 0 1 1 1 0 Ribosomal L37ae protein family C1_3 PF07649.7 gi|289937471|ref|YP_003482073.1| - 0.11 12.5 2.4 0.37 10.8 1.7 1.9 1 0 0 1 1 1 0 C1-like domain DUF3791 PF12668.2 gi|289937471|ref|YP_003482073.1| - 0.11 12.1 0.0 0.36 10.4 0.0 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF3791) C1_2 PF03107.11 gi|289937471|ref|YP_003482073.1| - 0.15 12.2 3.0 0.36 10.9 2.1 1.7 1 0 0 1 1 1 0 C1 domain MFS_1 PF07690.11 gi|289937472|ref|YP_003482074.1| - 0.00033 19.4 17.3 0.00038 19.2 12.0 1.0 1 0 0 1 1 1 1 Major Facilitator Superfamily DSRB PF10781.4 gi|289937472|ref|YP_003482074.1| - 0.09 12.2 0.0 0.16 11.4 0.0 1.5 1 0 0 1 1 1 0 Dextransucrase DSRB DAO PF01266.19 gi|289937473|ref|YP_003482075.1| - 1.2e-67 228.3 8.4 1.4e-67 228.1 5.8 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|289937473|ref|YP_003482075.1| - 1.7e-09 37.0 2.4 2.2e-09 36.6 1.7 1.1 1 0 0 1 1 1 1 FAD binding domain GIDA PF01134.17 gi|289937473|ref|YP_003482075.1| - 1.9e-07 30.2 1.6 0.0036 16.2 0.0 2.3 2 0 0 2 2 2 2 Glucose inhibited division protein A Pyr_redox_3 PF13738.1 gi|289937473|ref|YP_003482075.1| - 3.2e-06 27.3 0.1 0.077 13.0 0.0 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.9 gi|289937473|ref|YP_003482075.1| - 3.5e-06 27.0 0.1 0.04 13.7 0.1 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|289937473|ref|YP_003482075.1| - 2e-05 23.8 2.5 0.00086 18.4 1.0 2.2 2 0 0 2 2 2 1 FAD binding domain Lycopene_cycl PF05834.7 gi|289937473|ref|YP_003482075.1| - 2.3e-05 23.5 0.3 0.052 12.4 0.0 2.3 2 0 0 2 2 2 2 Lycopene cyclase protein ApbA PF02558.11 gi|289937473|ref|YP_003482075.1| - 0.00025 20.4 0.6 0.00067 19.1 0.4 1.7 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA 3HCDH_N PF02737.13 gi|289937473|ref|YP_003482075.1| - 0.00032 20.4 0.3 0.00054 19.6 0.2 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_8 PF13450.1 gi|289937473|ref|YP_003482075.1| - 0.00057 19.8 1.0 0.0018 18.2 0.7 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Trp_halogenase PF04820.9 gi|289937473|ref|YP_003482075.1| - 0.0018 17.0 3.2 0.0088 14.7 2.2 1.9 1 1 0 1 1 1 1 Tryptophan halogenase NAD_binding_9 PF13454.1 gi|289937473|ref|YP_003482075.1| - 0.0031 17.2 5.6 0.0073 16.0 0.1 2.8 3 0 0 3 3 3 1 FAD-NAD(P)-binding HI0933_like PF03486.9 gi|289937473|ref|YP_003482075.1| - 0.022 13.2 2.4 0.16 10.4 0.0 2.1 2 0 0 2 2 2 0 HI0933-like protein Pyr_redox PF00070.22 gi|289937473|ref|YP_003482075.1| - 0.042 14.2 2.7 0.17 12.3 0.8 2.5 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase GMC_oxred_N PF00732.14 gi|289937473|ref|YP_003482075.1| - 0.084 12.0 0.2 11 5.0 0.0 2.2 2 0 0 2 2 2 0 GMC oxidoreductase NAD_binding_2 PF03446.10 gi|289937473|ref|YP_003482075.1| - 0.096 12.5 0.0 0.17 11.7 0.0 1.4 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase FAD_oxidored PF12831.2 gi|289937473|ref|YP_003482075.1| - 0.32 10.0 3.8 1.6 7.6 2.6 1.9 1 1 0 1 1 1 0 FAD dependent oxidoreductase Amidohydro_3 PF07969.6 gi|289937474|ref|YP_003482076.1| - 6.3e-26 91.5 5.6 2e-25 89.8 3.8 1.7 1 1 0 1 1 1 1 Amidohydrolase family D-aminoacyl_C PF07908.7 gi|289937474|ref|YP_003482076.1| - 3e-14 52.0 0.1 7.3e-14 50.8 0.1 1.7 1 0 0 1 1 1 1 D-aminoacylase, C-terminal region Amidohydro_4 PF13147.1 gi|289937474|ref|YP_003482076.1| - 1.7e-12 48.0 13.3 1.4e-06 28.5 0.3 2.6 1 1 0 2 2 2 2 Amidohydrolase Amidohydro_5 PF13594.1 gi|289937474|ref|YP_003482076.1| - 2.2e-11 43.4 0.4 6.9e-11 41.8 0.3 1.9 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_1 PF01979.15 gi|289937474|ref|YP_003482076.1| - 3.8e-11 43.2 0.0 3.5e-08 33.4 0.0 2.3 2 0 0 2 2 2 2 Amidohydrolase family Peptidase_M20 PF01546.23 gi|289937475|ref|YP_003482077.1| - 1.2e-24 86.8 1.8 2.9e-24 85.6 1.2 1.6 1 1 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|289937475|ref|YP_003482077.1| - 2.1e-08 33.8 0.2 3.6e-08 33.1 0.1 1.4 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M28 PF04389.12 gi|289937475|ref|YP_003482077.1| - 4.2e-06 26.6 0.1 8.8e-06 25.5 0.1 1.5 1 0 0 1 1 1 1 Peptidase family M28 OrfB_Zn_ribbon PF07282.6 gi|289937476|ref|YP_003482078.1| - 5e-18 64.5 2.0 1.1e-17 63.3 1.4 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|289937476|ref|YP_003482078.1| - 1.1e-05 25.0 0.3 1.8e-05 24.2 0.2 1.3 1 0 0 1 1 1 1 Probable transposase IBR PF01485.16 gi|289937476|ref|YP_003482078.1| - 0.004 16.9 2.2 0.0085 15.9 1.5 1.4 1 0 0 1 1 1 1 IBR domain PIN PF01850.16 gi|289937478|ref|YP_003482080.1| - 3e-09 37.2 2.2 7.1e-09 36.0 1.5 1.6 1 1 0 1 1 1 1 PIN domain PIN_3 PF13470.1 gi|289937478|ref|YP_003482080.1| - 0.042 14.5 2.5 0.19 12.3 1.7 2.0 1 1 0 1 1 1 0 PIN domain Antitoxin-MazE PF04014.13 gi|289937479|ref|YP_003482081.1| - 6.1e-07 29.0 0.4 1.7e-06 27.6 0.2 1.9 1 1 0 1 1 1 1 Antidote-toxin recognition MazE MraZ PF02381.13 gi|289937479|ref|YP_003482081.1| - 0.043 13.5 0.0 0.067 12.9 0.0 1.4 1 0 0 1 1 1 0 MraZ protein Amidohydro_4 PF13147.1 gi|289937480|ref|YP_003482082.1| - 3e-24 86.5 4.4 4.9e-24 85.8 3.1 1.4 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_5 PF13594.1 gi|289937480|ref|YP_003482082.1| - 8.5e-15 54.3 0.5 8.5e-15 54.3 0.4 2.7 4 0 0 4 4 4 1 Amidohydrolase Amidohydro_1 PF01979.15 gi|289937480|ref|YP_003482082.1| - 2.2e-13 50.5 0.0 4.7e-12 46.2 0.0 2.4 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.6 gi|289937480|ref|YP_003482082.1| - 4.7e-11 42.5 2.1 9.4e-07 28.3 0.1 2.4 1 1 0 2 2 2 2 Amidohydrolase family 2-Hacid_dh_C PF02826.14 gi|289937481|ref|YP_003482083.1| - 2.8e-52 176.4 0.0 3.8e-52 176.0 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|289937481|ref|YP_003482083.1| - 9.5e-13 47.7 0.0 1.2e-12 47.4 0.0 1.1 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain F420_oxidored PF03807.12 gi|289937481|ref|YP_003482083.1| - 3.4e-05 24.1 0.0 6.3e-05 23.3 0.0 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.10 gi|289937481|ref|YP_003482083.1| - 0.00028 20.7 0.1 0.00083 19.2 0.1 1.7 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase IlvN PF07991.7 gi|289937481|ref|YP_003482083.1| - 0.00059 19.2 0.0 0.00096 18.5 0.0 1.3 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain TrkA_N PF02254.13 gi|289937481|ref|YP_003482083.1| - 0.0035 17.3 0.2 0.0074 16.2 0.0 1.8 2 0 0 2 2 2 1 TrkA-N domain ThiF PF00899.16 gi|289937481|ref|YP_003482083.1| - 0.0043 16.8 0.3 0.0088 15.8 0.0 1.7 2 0 0 2 2 2 1 ThiF family Shikimate_DH PF01488.15 gi|289937481|ref|YP_003482083.1| - 0.0099 15.9 0.0 0.02 15.0 0.0 1.5 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase NAD_binding_7 PF13241.1 gi|289937481|ref|YP_003482083.1| - 0.011 15.9 0.0 0.027 14.7 0.0 1.6 2 0 0 2 2 1 0 Putative NAD(P)-binding 3HCDH_N PF02737.13 gi|289937481|ref|YP_003482083.1| - 0.022 14.4 1.1 0.062 12.9 0.1 2.1 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.9 gi|289937481|ref|YP_003482083.1| - 0.082 12.2 0.0 0.15 11.4 0.0 1.4 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_10 PF13460.1 gi|289937481|ref|YP_003482083.1| - 0.082 12.9 0.2 0.13 12.2 0.1 1.4 1 0 0 1 1 1 0 NADH(P)-binding ApbA PF02558.11 gi|289937481|ref|YP_003482083.1| - 0.11 11.8 0.1 0.27 10.6 0.1 1.7 1 1 0 1 1 1 0 Ketopantoate reductase PanE/ApbA ELFV_dehydrog PF00208.16 gi|289937481|ref|YP_003482083.1| - 0.16 11.5 0.0 0.25 10.8 0.0 1.2 1 0 0 1 1 1 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase NAD_Gly3P_dh_N PF01210.18 gi|289937481|ref|YP_003482083.1| - 0.17 11.6 1.3 2.6 7.7 0.2 2.8 2 1 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus TrkA_C PF02080.16 gi|289937481|ref|YP_003482083.1| - 0.22 11.1 1.6 0.26 10.8 0.1 2.0 2 0 0 2 2 2 0 TrkA-C domain Peptidase_M20 PF01546.23 gi|289937482|ref|YP_003482084.1| - 6.6e-23 81.2 1.6 9.7e-23 80.6 1.1 1.3 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|289937482|ref|YP_003482084.1| - 1.8e-10 40.5 0.6 4.2e-10 39.3 0.4 1.5 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M28 PF04389.12 gi|289937483|ref|YP_003482085.1| - 6.8e-22 78.0 0.7 1e-21 77.4 0.5 1.3 1 0 0 1 1 1 1 Peptidase family M28 PA PF02225.17 gi|289937483|ref|YP_003482085.1| - 3.4e-08 33.0 0.1 9e-08 31.7 0.0 1.8 2 0 0 2 2 2 1 PA domain Peptidase_M42 PF05343.9 gi|289937483|ref|YP_003482085.1| - 0.014 14.1 0.0 0.032 13.0 0.0 1.6 2 0 0 2 2 2 0 M42 glutamyl aminopeptidase PmbA_TldD PF01523.11 gi|289937484|ref|YP_003482086.1| - 1.8e-31 109.5 0.0 2.3e-31 109.1 0.0 1.2 1 0 0 1 1 1 1 Putative modulator of DNA gyrase RHS_repeat PF05593.9 gi|289937484|ref|YP_003482086.1| - 0.063 13.4 8.4 0.22 11.7 0.0 5.2 5 0 0 5 5 5 0 RHS Repeat ABC_tran PF00005.22 gi|289937485|ref|YP_003482087.1| - 8.3e-32 110.3 0.0 1.2e-31 109.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|289937485|ref|YP_003482087.1| - 1.3e-18 67.0 0.1 3e-18 65.9 0.0 1.7 2 0 0 2 2 2 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|289937485|ref|YP_003482087.1| - 0.00035 20.6 0.6 0.0014 18.6 0.1 1.8 1 1 1 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|289937485|ref|YP_003482087.1| - 0.0033 17.7 0.0 0.0063 16.8 0.0 1.5 1 0 0 1 1 1 1 AAA domain tRNA_lig_kinase PF08303.6 gi|289937485|ref|YP_003482087.1| - 0.015 15.2 0.0 0.022 14.6 0.0 1.3 1 0 0 1 1 1 0 tRNA ligase kinase domain PRK PF00485.13 gi|289937485|ref|YP_003482087.1| - 0.018 14.6 0.0 0.025 14.1 0.0 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA_22 PF13401.1 gi|289937485|ref|YP_003482087.1| - 0.045 13.8 0.4 0.27 11.3 0.3 2.1 1 1 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|289937486|ref|YP_003482088.1| - 1.8e-29 102.7 0.0 2.6e-29 102.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|289937486|ref|YP_003482088.1| - 3.6e-20 72.0 0.7 6.8e-20 71.1 0.5 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|289937486|ref|YP_003482088.1| - 7.2e-11 42.5 0.1 1e-05 25.6 0.0 2.2 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|289937486|ref|YP_003482088.1| - 3.7e-06 26.3 0.2 9.3e-06 25.0 0.1 1.5 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|289937486|ref|YP_003482088.1| - 0.00041 19.8 0.0 0.00071 19.0 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|289937486|ref|YP_003482088.1| - 0.0006 19.8 0.1 0.001 19.0 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain Mg_chelatase PF01078.16 gi|289937486|ref|YP_003482088.1| - 0.0016 17.6 0.0 0.0046 16.1 0.0 1.7 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI ABC_ATPase PF09818.4 gi|289937486|ref|YP_003482088.1| - 0.002 16.7 0.6 0.14 10.7 0.5 2.3 2 1 0 2 2 2 1 Predicted ATPase of the ABC class IstB_IS21 PF01695.12 gi|289937486|ref|YP_003482088.1| - 0.002 17.5 0.0 0.0043 16.4 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_15 PF13175.1 gi|289937486|ref|YP_003482088.1| - 0.0021 17.1 0.1 1.4 7.8 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_17 PF13207.1 gi|289937486|ref|YP_003482088.1| - 0.0033 18.2 0.0 0.0067 17.2 0.0 1.6 1 0 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|289937486|ref|YP_003482088.1| - 0.0043 16.2 0.0 0.0065 15.6 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 DUF1015 PF06245.6 gi|289937486|ref|YP_003482088.1| - 0.0052 15.3 0.0 0.0071 14.9 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1015) NB-ARC PF00931.17 gi|289937486|ref|YP_003482088.1| - 0.0065 15.3 0.6 0.033 13.0 0.0 2.2 3 0 0 3 3 3 1 NB-ARC domain AAA_18 PF13238.1 gi|289937486|ref|YP_003482088.1| - 0.0065 16.7 0.1 0.016 15.5 0.0 1.7 2 0 0 2 2 1 1 AAA domain AAA_22 PF13401.1 gi|289937486|ref|YP_003482088.1| - 0.0078 16.3 0.5 0.042 13.9 0.4 2.0 1 1 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|289937486|ref|YP_003482088.1| - 0.0099 15.5 0.4 0.18 11.4 0.1 2.2 1 1 1 2 2 2 1 NACHT domain AAA_23 PF13476.1 gi|289937486|ref|YP_003482088.1| - 0.019 15.3 0.0 0.03 14.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain DUF87 PF01935.12 gi|289937486|ref|YP_003482088.1| - 0.023 14.5 0.6 0.41 10.4 0.2 2.1 1 1 1 2 2 2 0 Domain of unknown function DUF87 AAA_25 PF13481.1 gi|289937486|ref|YP_003482088.1| - 0.032 13.6 0.1 0.059 12.7 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|289937486|ref|YP_003482088.1| - 0.032 13.6 0.3 0.068 12.5 0.1 1.6 1 1 0 1 1 1 0 AAA-like domain MMR_HSR1 PF01926.18 gi|289937486|ref|YP_003482088.1| - 0.041 13.8 0.1 0.067 13.1 0.1 1.7 1 1 0 1 1 1 0 50S ribosome-binding GTPase MobB PF03205.9 gi|289937486|ref|YP_003482088.1| - 0.042 13.5 0.1 0.095 12.3 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA PF00004.24 gi|289937486|ref|YP_003482088.1| - 0.05 13.8 0.8 0.12 12.5 0.1 2.2 2 1 0 2 2 1 0 ATPase family associated with various cellular activities (AAA) ATP-synt_ab PF00006.20 gi|289937486|ref|YP_003482088.1| - 0.059 12.8 0.1 0.18 11.2 0.1 1.4 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain Sigma54_activat PF00158.21 gi|289937486|ref|YP_003482088.1| - 0.084 12.3 0.2 0.56 9.6 0.0 2.0 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA_5 PF07728.9 gi|289937486|ref|YP_003482088.1| - 0.094 12.4 0.1 0.25 11.0 0.1 1.7 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) RNA_helicase PF00910.17 gi|289937486|ref|YP_003482088.1| - 0.11 12.7 0.0 0.2 11.8 0.0 1.5 1 0 0 1 1 1 0 RNA helicase PRK PF00485.13 gi|289937486|ref|YP_003482088.1| - 0.11 12.0 0.0 0.21 11.1 0.0 1.4 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family BPD_transp_1 PF00528.17 gi|289937487|ref|YP_003482089.1| - 2.6e-22 79.2 10.9 2.6e-22 79.2 7.6 1.9 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|289937487|ref|YP_003482089.1| - 2.7e-06 26.6 0.1 2.7e-06 26.6 0.0 2.1 2 0 0 2 2 2 1 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.17 gi|289937488|ref|YP_003482090.1| - 2.3e-40 138.0 9.8 2.3e-40 138.0 6.8 2.4 2 1 1 3 3 3 1 Binding-protein-dependent transport system inner membrane component SBP_bac_5 PF00496.17 gi|289937489|ref|YP_003482091.1| - 6.5e-50 170.0 0.5 8.3e-40 136.7 0.0 2.1 2 0 0 2 2 2 2 Bacterial extracellular solute-binding proteins, family 5 Middle TAT_signal PF10518.4 gi|289937489|ref|YP_003482091.1| - 0.13 12.3 2.3 0.27 11.3 1.6 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Peptidase_M28 PF04389.12 gi|289937490|ref|YP_003482092.1| - 1e-29 103.5 0.2 1.5e-29 102.9 0.1 1.3 1 0 0 1 1 1 1 Peptidase family M28 PA PF02225.17 gi|289937490|ref|YP_003482092.1| - 1.3e-09 37.6 0.0 2.3e-09 36.8 0.0 1.3 1 0 0 1 1 1 1 PA domain Peptidase_M20 PF01546.23 gi|289937490|ref|YP_003482092.1| - 0.003 17.0 0.1 0.0052 16.3 0.1 1.5 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M42 PF05343.9 gi|289937490|ref|YP_003482092.1| - 0.0047 15.7 0.3 0.059 12.1 0.0 2.3 1 1 0 2 2 2 1 M42 glutamyl aminopeptidase CEP76-C2 PF15627.1 gi|289937490|ref|YP_003482092.1| - 0.01 15.3 0.0 0.016 14.7 0.0 1.2 1 0 0 1 1 1 0 CEP76 C2 domain Peptidase_M28 PF04389.12 gi|289937491|ref|YP_003482093.1| - 1.1e-30 106.7 0.0 1.5e-30 106.2 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M28 PA PF02225.17 gi|289937491|ref|YP_003482093.1| - 1.4e-11 44.0 0.0 1.8e-10 40.4 0.0 2.7 3 0 0 3 3 3 1 PA domain Peptidase_M20 PF01546.23 gi|289937491|ref|YP_003482093.1| - 5.5e-06 26.0 0.1 7.7e-06 25.5 0.1 1.3 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M42 PF05343.9 gi|289937491|ref|YP_003482093.1| - 4.5e-05 22.3 0.1 7.4e-05 21.6 0.1 1.3 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Nicastrin PF05450.10 gi|289937491|ref|YP_003482093.1| - 0.017 14.3 0.0 0.029 13.6 0.0 1.3 1 0 0 1 1 1 0 Nicastrin PGA_cap PF09587.5 gi|289937492|ref|YP_003482094.1| - 1.5e-61 207.9 0.1 1.9e-61 207.5 0.0 1.1 1 0 0 1 1 1 1 Bacterial capsule synthesis protein PGA_cap NT5C PF06941.7 gi|289937493|ref|YP_003482095.1| - 0.00039 19.9 0.0 0.00062 19.3 0.0 1.3 1 1 0 1 1 1 1 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) Peptidase_M20 PF01546.23 gi|289937494|ref|YP_003482096.1| - 9.2e-22 77.4 2.2 2.3e-21 76.1 1.1 1.8 1 1 1 2 2 2 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|289937494|ref|YP_003482096.1| - 6.6e-05 22.6 0.1 0.00046 19.9 0.0 2.3 2 0 0 2 2 2 1 Peptidase dimerisation domain Peptidase_M42 PF05343.9 gi|289937494|ref|YP_003482096.1| - 0.0019 17.0 0.0 0.038 12.7 0.0 2.5 2 1 1 3 3 3 1 M42 glutamyl aminopeptidase Peptidase_M28 PF04389.12 gi|289937494|ref|YP_003482096.1| - 0.013 15.2 0.0 0.27 10.9 0.0 2.7 3 0 0 3 3 3 0 Peptidase family M28 Pribosyltran PF00156.22 gi|289937495|ref|YP_003482097.1| - 1e-16 60.7 2.2 1.7e-16 60.1 1.5 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain Peptidase_M55 PF04951.8 gi|289937496|ref|YP_003482098.1| - 2.1e-78 263.1 0.2 2.5e-78 262.9 0.1 1.0 1 0 0 1 1 1 1 D-aminopeptidase Peptidase_M20 PF01546.23 gi|289937498|ref|YP_003482100.1| - 7.2e-34 116.9 0.4 8.8e-34 116.6 0.3 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|289937498|ref|YP_003482100.1| - 2.7e-16 59.2 0.0 4.8e-16 58.4 0.0 1.4 1 0 0 1 1 1 1 Peptidase dimerisation domain PALP PF00291.20 gi|289937499|ref|YP_003482101.1| - 4.2e-08 32.7 0.1 5.4e-08 32.4 0.1 1.2 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme PALP PF00291.20 gi|289937500|ref|YP_003482102.1| - 5.6e-49 167.0 0.0 7.5e-49 166.6 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme C1_2 PF03107.11 gi|289937500|ref|YP_003482102.1| - 0.016 15.2 0.2 0.036 14.1 0.1 1.6 1 0 0 1 1 1 0 C1 domain TAT_signal PF10518.4 gi|289937501|ref|YP_003482103.1| - 0.00079 19.2 0.2 0.0011 18.7 0.2 1.3 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Phage_integrase PF00589.17 gi|289937502|ref|YP_003482104.1| - 6.3e-09 35.7 0.0 2.1e-08 34.0 0.0 1.9 1 1 0 1 1 1 1 Phage integrase family Nitroreductase PF00881.19 gi|289937504|ref|YP_003482106.1| - 1.8e-25 89.6 0.0 2.1e-25 89.4 0.0 1.0 1 0 0 1 1 1 1 Nitroreductase family Usp PF00582.21 gi|289937505|ref|YP_003482107.1| - 6.4e-31 107.4 0.3 7.1e-31 107.2 0.2 1.0 1 0 0 1 1 1 1 Universal stress protein family ETF PF01012.16 gi|289937505|ref|YP_003482107.1| - 0.054 13.2 0.8 0.078 12.6 0.2 1.5 1 1 1 2 2 2 0 Electron transfer flavoprotein domain MGS PF02142.17 gi|289937505|ref|YP_003482107.1| - 0.061 13.2 0.0 0.085 12.7 0.0 1.3 1 1 0 1 1 1 0 MGS-like domain Fn3_assoc PF13287.1 gi|289937505|ref|YP_003482107.1| - 0.094 12.8 0.0 0.16 12.0 0.0 1.3 1 0 0 1 1 1 0 Fn3 associated PYNP_C PF07831.8 gi|289937506|ref|YP_003482108.1| - 5.2e-12 45.0 0.0 1.2e-11 43.8 0.0 1.7 1 0 0 1 1 1 1 Pyrimidine nucleoside phosphorylase C-terminal domain Glycos_transf_3 PF00591.16 gi|289937506|ref|YP_003482108.1| - 1.3e-07 31.2 0.8 3e-07 30.1 0.5 1.6 1 0 0 1 1 1 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.12 gi|289937506|ref|YP_003482108.1| - 3.3e-06 26.6 0.0 6.9e-06 25.5 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase family, helical bundle domain DUF2254 PF10011.4 gi|289937506|ref|YP_003482108.1| - 0.14 10.6 0.0 0.21 9.9 0.0 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2254) Usp PF00582.21 gi|289937507|ref|YP_003482109.1| - 7.7e-26 90.9 0.0 9e-26 90.7 0.0 1.1 1 0 0 1 1 1 1 Universal stress protein family CoA_transf_3 PF02515.12 gi|289937508|ref|YP_003482110.1| - 1.5e-63 213.4 0.0 2e-63 213.1 0.0 1.1 1 0 0 1 1 1 1 CoA-transferase family III IclR PF01614.13 gi|289937509|ref|YP_003482111.1| - 8e-29 99.9 0.0 1.2e-27 96.1 0.0 2.1 2 0 0 2 2 2 1 Bacterial transcriptional regulator HTH_IclR PF09339.5 gi|289937509|ref|YP_003482111.1| - 1.2e-10 40.7 0.7 2.5e-08 33.3 0.0 3.3 3 0 0 3 3 3 1 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|289937509|ref|YP_003482111.1| - 1e-08 34.4 0.0 1.5e-07 30.6 0.0 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|289937509|ref|YP_003482111.1| - 8.8e-08 31.8 0.0 2.2e-07 30.5 0.0 1.7 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|289937509|ref|YP_003482111.1| - 6.4e-07 28.9 0.0 2.2e-06 27.2 0.0 1.9 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|289937509|ref|YP_003482111.1| - 9e-07 28.4 0.1 3.2e-05 23.5 0.0 2.7 3 0 0 3 3 2 1 MarR family HTH_11 PF08279.7 gi|289937509|ref|YP_003482111.1| - 9.6e-07 28.3 0.0 2.9e-06 26.8 0.0 1.8 1 0 0 1 1 1 1 HTH domain MarR PF01047.17 gi|289937509|ref|YP_003482111.1| - 0.00017 21.2 0.7 0.00047 19.8 0.0 2.0 3 0 0 3 3 2 1 MarR family Rrf2 PF02082.15 gi|289937509|ref|YP_003482111.1| - 0.00023 21.2 0.1 0.00076 19.5 0.1 1.9 1 1 0 1 1 1 1 Transcriptional regulator HTH_34 PF13601.1 gi|289937509|ref|YP_003482111.1| - 0.00026 20.9 0.0 0.00055 19.9 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_AsnC-type PF13404.1 gi|289937509|ref|YP_003482111.1| - 0.00037 19.9 0.1 0.004 16.6 0.0 2.3 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain TrmB PF01978.14 gi|289937509|ref|YP_003482111.1| - 0.00041 20.0 0.3 0.0016 18.1 0.0 2.1 3 0 0 3 3 2 1 Sugar-specific transcriptional regulator TrmB HTH_40 PF14493.1 gi|289937509|ref|YP_003482111.1| - 0.00087 19.4 0.6 0.0029 17.7 0.1 2.2 2 1 0 2 2 1 1 Helix-turn-helix domain B-block_TFIIIC PF04182.7 gi|289937509|ref|YP_003482111.1| - 0.0016 18.2 0.0 0.0028 17.4 0.0 1.4 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC SpoIIID PF12116.3 gi|289937509|ref|YP_003482111.1| - 0.0018 18.1 0.2 0.0055 16.6 0.1 1.9 1 0 0 1 1 1 1 Stage III sporulation protein D Sigma70_ECF PF07638.6 gi|289937509|ref|YP_003482111.1| - 0.0033 17.1 0.0 0.0065 16.1 0.0 1.4 1 0 0 1 1 1 1 ECF sigma factor HTH_28 PF13518.1 gi|289937509|ref|YP_003482111.1| - 0.0048 16.8 0.0 0.022 14.7 0.0 2.1 3 0 0 3 3 1 1 Helix-turn-helix domain HTH_DeoR PF08220.7 gi|289937509|ref|YP_003482111.1| - 0.005 16.3 0.1 0.013 15.0 0.0 1.7 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_27 PF13463.1 gi|289937509|ref|YP_003482111.1| - 0.0058 16.9 0.2 0.067 13.5 0.0 2.4 3 0 0 3 3 2 1 Winged helix DNA-binding domain DUF1670 PF07900.6 gi|289937509|ref|YP_003482111.1| - 0.006 15.8 0.2 0.021 14.0 0.0 1.7 1 1 1 2 2 2 1 Protein of unknown function (DUF1670) HTH_10 PF04967.7 gi|289937509|ref|YP_003482111.1| - 0.008 15.7 0.1 0.033 13.7 0.0 2.0 2 0 0 2 2 2 1 HTH DNA binding domain HTH_41 PF14502.1 gi|289937509|ref|YP_003482111.1| - 0.0084 15.7 0.0 0.021 14.4 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain TetR_N PF00440.18 gi|289937509|ref|YP_003482111.1| - 0.0095 15.5 0.3 0.066 12.8 0.1 2.5 2 0 0 2 2 2 1 Bacterial regulatory proteins, tetR family HTH_23 PF13384.1 gi|289937509|ref|YP_003482111.1| - 0.0096 15.5 0.1 0.034 13.7 0.0 1.9 2 0 0 2 2 2 1 Homeodomain-like domain Fe_dep_repress PF01325.14 gi|289937509|ref|YP_003482111.1| - 0.01 15.7 0.0 0.022 14.6 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_36 PF13730.1 gi|289937509|ref|YP_003482111.1| - 0.011 15.8 0.0 0.035 14.2 0.0 1.9 2 1 0 2 2 1 0 Helix-turn-helix domain HTH_Tnp_1 PF01527.15 gi|289937509|ref|YP_003482111.1| - 0.012 15.5 0.4 0.19 11.6 0.0 2.6 3 1 0 3 3 2 0 Transposase HTH_9 PF08221.6 gi|289937509|ref|YP_003482111.1| - 0.02 14.7 0.1 0.049 13.5 0.1 1.6 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_17 PF12728.2 gi|289937509|ref|YP_003482111.1| - 0.027 14.6 0.1 6.3 7.1 0.0 2.6 3 0 0 3 3 2 0 Helix-turn-helix domain LexA_DNA_bind PF01726.11 gi|289937509|ref|YP_003482111.1| - 0.05 13.1 0.0 0.22 11.1 0.0 2.1 2 0 0 2 2 2 0 LexA DNA binding domain HTH_45 PF14947.1 gi|289937509|ref|YP_003482111.1| - 0.076 12.8 0.0 0.14 11.9 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_38 PF13936.1 gi|289937509|ref|YP_003482111.1| - 0.08 12.5 0.0 0.19 11.2 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain RepL PF05732.6 gi|289937509|ref|YP_003482111.1| - 0.087 12.0 0.1 0.44 9.7 0.1 2.1 1 1 0 1 1 1 0 Firmicute plasmid replication protein (RepL) Sigma70_r4_2 PF08281.7 gi|289937509|ref|YP_003482111.1| - 0.093 12.2 0.7 0.23 10.9 0.0 2.0 3 0 0 3 3 2 0 Sigma-70, region 4 SLA_LP_auto_ag PF05889.8 gi|289937509|ref|YP_003482111.1| - 0.11 10.9 0.1 0.2 10.0 0.0 1.4 2 0 0 2 2 2 0 Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) DUF977 PF06163.6 gi|289937509|ref|YP_003482111.1| - 0.13 11.9 0.6 0.36 10.5 0.1 1.8 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF977) Sigma70_r4 PF04545.11 gi|289937509|ref|YP_003482111.1| - 0.36 10.1 2.5 0.45 9.8 0.0 2.3 3 0 0 3 3 3 0 Sigma-70, region 4 Thiolase_N PF00108.18 gi|289937510|ref|YP_003482112.1| - 1.3e-10 40.7 0.2 8.2e-10 38.0 0.0 2.0 2 0 0 2 2 2 1 Thiolase, N-terminal domain Thiolase_C PF02803.13 gi|289937510|ref|YP_003482112.1| - 7.3e-09 35.0 0.1 2e-08 33.7 0.1 1.7 1 0 0 1 1 1 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.21 gi|289937510|ref|YP_003482112.1| - 6.1e-06 25.9 1.7 1.3e-05 24.7 1.2 1.5 1 0 0 1 1 1 1 Beta-ketoacyl synthase, N-terminal domain ACP_syn_III PF08545.5 gi|289937510|ref|YP_003482112.1| - 0.062 12.9 1.1 0.7 9.5 0.1 2.4 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III DUF35_N PF12172.3 gi|289937511|ref|YP_003482113.1| - 9.5e-11 41.2 3.6 2.6e-10 39.9 2.5 1.8 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) DUF35 PF01796.12 gi|289937511|ref|YP_003482113.1| - 2.1e-05 24.6 1.1 4.2e-05 23.6 0.8 1.5 1 0 0 1 1 1 1 DUF35 OB-fold domain ACP_syn_III_C PF08541.5 gi|289937511|ref|YP_003482113.1| - 0.0001 22.2 1.5 0.00042 20.2 0.7 2.2 2 1 1 3 3 3 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal DZR PF12773.2 gi|289937511|ref|YP_003482113.1| - 0.044 13.6 0.9 0.08 12.7 0.6 1.3 1 0 0 1 1 1 0 Double zinc ribbon TF_Zn_Ribbon PF08271.7 gi|289937511|ref|YP_003482113.1| - 1.5 8.2 3.3 3.6 6.9 2.3 1.7 1 1 0 1 1 1 0 TFIIB zinc-binding 3HCDH_N PF02737.13 gi|289937512|ref|YP_003482114.1| - 5.2e-62 208.6 1.1 6.6e-62 208.3 0.8 1.1 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 3HCDH PF00725.17 gi|289937512|ref|YP_003482114.1| - 9.3e-32 109.3 0.0 4e-31 107.2 0.0 2.1 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NAD_Gly3P_dh_N PF01210.18 gi|289937512|ref|YP_003482114.1| - 3e-09 36.8 0.4 8.2e-09 35.3 0.3 1.7 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus UDPG_MGDP_dh_N PF03721.9 gi|289937512|ref|YP_003482114.1| - 3.8e-07 29.6 0.2 6.9e-07 28.8 0.1 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_2 PF03446.10 gi|289937512|ref|YP_003482114.1| - 4.1e-06 26.7 1.5 4.1e-06 26.7 1.0 1.8 2 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.12 gi|289937512|ref|YP_003482114.1| - 3.1e-05 24.3 5.4 3.3e-05 24.2 1.4 2.6 2 1 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent ApbA PF02558.11 gi|289937512|ref|YP_003482114.1| - 0.022 14.1 0.0 0.036 13.5 0.0 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Glyco_hydro_4 PF02056.11 gi|289937512|ref|YP_003482114.1| - 0.048 12.9 0.2 0.14 11.4 0.1 1.8 1 1 0 1 1 1 0 Family 4 glycosyl hydrolase AlaDh_PNT_C PF01262.16 gi|289937512|ref|YP_003482114.1| - 0.081 12.4 0.7 0.14 11.7 0.1 1.7 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain MORN PF02493.15 gi|289937512|ref|YP_003482114.1| - 0.1 12.3 2.0 0.13 12.0 0.2 2.1 2 0 0 2 2 2 0 MORN repeat Saccharop_dh PF03435.13 gi|289937512|ref|YP_003482114.1| - 0.24 10.3 1.5 0.21 10.5 0.2 1.5 2 0 0 2 2 2 0 Saccharopine dehydrogenase TrkA_N PF02254.13 gi|289937512|ref|YP_003482114.1| - 0.7 9.8 5.4 0.79 9.7 1.3 2.5 2 1 0 2 2 2 0 TrkA-N domain Acyl-CoA_dh_1 PF00441.19 gi|289937513|ref|YP_003482115.1| - 7.6e-54 181.8 3.4 1.1e-53 181.3 2.3 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|289937513|ref|YP_003482115.1| - 2.2e-29 102.2 0.8 4.4e-29 101.3 0.1 1.9 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.6 gi|289937513|ref|YP_003482115.1| - 5.3e-28 97.9 5.7 7.9e-28 97.3 4.0 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.14 gi|289937513|ref|YP_003482115.1| - 5.5e-20 70.6 0.3 1.2e-19 69.5 0.2 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain HpaB PF03241.8 gi|289937513|ref|YP_003482115.1| - 0.0015 17.4 0.3 0.0026 16.6 0.2 1.5 1 0 0 1 1 1 1 4-hydroxyphenylacetate 3-hydroxylase C terminal HpaB_N PF11794.3 gi|289937513|ref|YP_003482115.1| - 0.0027 17.1 2.2 0.012 15.0 0.5 2.5 2 1 0 2 2 2 1 4-hydroxyphenylacetate 3-hydroxylase N terminal TAT_signal PF10518.4 gi|289937514|ref|YP_003482116.1| - 0.01 15.7 0.4 0.017 15.0 0.3 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence AIRC PF00731.15 gi|289937514|ref|YP_003482116.1| - 0.14 11.4 0.2 0.25 10.6 0.1 1.3 1 0 0 1 1 1 0 AIR carboxylase DctM PF06808.7 gi|289937515|ref|YP_003482117.1| - 2.7e-55 187.6 52.4 4.5e-55 186.9 36.3 1.3 1 0 0 1 1 1 1 DctM-like transporters NikR_C PF08753.6 gi|289937516|ref|YP_003482118.1| - 4e-12 45.8 0.5 7.1e-12 45.0 0.1 1.5 1 1 0 1 1 1 1 NikR C terminal nickel binding domain RHH_1 PF01402.16 gi|289937516|ref|YP_003482118.1| - 0.014 15.3 0.0 0.024 14.5 0.0 1.4 1 0 0 1 1 1 0 Ribbon-helix-helix protein, copG family DUF2191 PF09957.4 gi|289937516|ref|YP_003482118.1| - 0.014 15.2 0.0 0.055 13.2 0.0 1.9 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2191) DUF1024 PF06260.7 gi|289937516|ref|YP_003482118.1| - 0.018 15.1 0.1 0.031 14.4 0.1 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF1024) DUF3090 PF11290.3 gi|289937516|ref|YP_003482118.1| - 0.089 12.2 0.1 0.12 11.8 0.1 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3090) DUF4456 PF14644.1 gi|289937516|ref|YP_003482118.1| - 0.096 11.9 0.1 0.12 11.6 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4456) TerC PF03741.11 gi|289937517|ref|YP_003482119.1| - 2e-05 24.1 2.1 0.0004 19.8 1.5 2.1 1 1 0 1 1 1 1 Integral membrane protein TerC family DsbD PF02683.10 gi|289937517|ref|YP_003482119.1| - 4.8e-05 23.0 3.8 0.034 13.7 0.7 2.3 2 0 0 2 2 2 2 Cytochrome C biogenesis protein transmembrane region DUF2910 PF11139.3 gi|289937517|ref|YP_003482119.1| - 0.00045 19.4 4.4 0.001 18.2 1.4 2.5 1 1 1 2 2 2 1 Protein of unknown function (DUF2910) NicO PF03824.11 gi|289937517|ref|YP_003482119.1| - 0.0065 15.8 17.6 0.016 14.5 12.1 1.9 1 1 0 1 1 1 1 High-affinity nickel-transport protein E1_dh PF00676.15 gi|289937518|ref|YP_003482120.1| - 7.7e-71 238.2 0.0 9.6e-71 237.9 0.0 1.1 1 0 0 1 1 1 1 Dehydrogenase E1 component DXP_synthase_N PF13292.1 gi|289937518|ref|YP_003482120.1| - 9.5e-08 31.2 0.0 1.8e-07 30.3 0.0 1.4 1 0 0 1 1 1 1 1-deoxy-D-xylulose-5-phosphate synthase TPP_enzyme_C PF02775.16 gi|289937518|ref|YP_003482120.1| - 4.4e-05 23.1 1.3 0.001 18.6 0.1 3.0 2 1 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Transketolase_N PF00456.16 gi|289937518|ref|YP_003482120.1| - 0.0009 18.1 0.1 0.002 17.0 0.1 1.5 1 1 0 1 1 1 1 Transketolase, thiamine diphosphate binding domain DUF4164 PF13747.1 gi|289937518|ref|YP_003482120.1| - 0.0074 16.3 1.7 0.014 15.4 1.2 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4164) Transket_pyr PF02779.19 gi|289937519|ref|YP_003482121.1| - 7.3e-45 152.6 1.3 1.2e-44 151.9 0.9 1.3 1 0 0 1 1 1 1 Transketolase, pyrimidine binding domain Transketolase_C PF02780.15 gi|289937519|ref|YP_003482121.1| - 3.8e-36 123.7 0.9 7.3e-36 122.8 0.6 1.5 1 0 0 1 1 1 1 Transketolase, C-terminal domain DUF460 PF04312.8 gi|289937519|ref|YP_003482121.1| - 0.037 13.5 0.2 0.065 12.7 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF460) FMN_red PF03358.10 gi|289937519|ref|YP_003482121.1| - 0.044 13.2 0.2 0.38 10.2 0.0 2.5 2 2 0 2 2 2 0 NADPH-dependent FMN reductase Biotin_lipoyl PF00364.17 gi|289937520|ref|YP_003482122.1| - 1.1e-17 63.4 0.2 1.3e-17 63.1 0.1 1.1 1 0 0 1 1 1 1 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.1 gi|289937520|ref|YP_003482122.1| - 8.1e-08 31.8 0.0 0.00045 19.8 0.0 2.1 1 1 1 2 2 2 2 Biotin-lipoyl like GCV_H PF01597.14 gi|289937520|ref|YP_003482122.1| - 0.0015 18.2 0.1 0.0017 18.0 0.1 1.2 1 0 0 1 1 1 1 Glycine cleavage H-protein HlyD_3 PF13437.1 gi|289937520|ref|YP_003482122.1| - 0.0061 16.8 0.0 0.028 14.7 0.0 1.8 1 1 1 2 2 2 1 HlyD family secretion protein QRPTase_N PF02749.11 gi|289937520|ref|YP_003482122.1| - 0.0077 16.0 0.1 0.097 12.5 0.0 2.0 1 1 1 2 2 2 1 Quinolinate phosphoribosyl transferase, N-terminal domain HlyD PF00529.15 gi|289937520|ref|YP_003482122.1| - 0.015 14.6 0.0 1.9 7.7 0.0 2.0 2 0 0 2 2 2 0 HlyD family secretion protein RnfC_N PF13375.1 gi|289937520|ref|YP_003482122.1| - 0.019 14.6 0.0 0.022 14.4 0.0 1.2 1 0 0 1 1 1 0 RnfC Barrel sandwich hybrid domain PTS_EIIA_1 PF00358.15 gi|289937520|ref|YP_003482122.1| - 0.054 13.0 0.2 0.38 10.3 0.1 2.0 1 1 0 1 1 1 0 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 HlyD_2 PF12700.2 gi|289937520|ref|YP_003482122.1| - 0.066 12.3 0.0 0.33 10.0 0.0 1.7 1 1 1 2 2 2 0 HlyD family secretion protein NQRA PF05896.6 gi|289937520|ref|YP_003482122.1| - 0.066 12.3 0.0 0.068 12.3 0.0 1.1 1 0 0 1 1 1 0 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) DUF2118 PF09891.4 gi|289937520|ref|YP_003482122.1| - 0.069 12.8 0.0 0.11 12.1 0.0 1.3 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2118) 2-oxoacid_dh PF00198.18 gi|289937521|ref|YP_003482123.1| - 1.3e-67 227.4 0.0 1.5e-67 227.2 0.0 1.0 1 0 0 1 1 1 1 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CPSase_L_D2 PF02786.12 gi|289937522|ref|YP_003482124.1| - 1.6e-71 239.9 0.1 2.4e-71 239.3 0.0 1.3 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_chain PF00289.17 gi|289937522|ref|YP_003482124.1| - 6.7e-40 135.6 0.1 1.5e-39 134.4 0.1 1.7 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, N-terminal domain Biotin_carb_C PF02785.14 gi|289937522|ref|YP_003482124.1| - 1.6e-38 130.9 0.0 3.4e-38 129.9 0.0 1.6 1 0 0 1 1 1 1 Biotin carboxylase C-terminal domain ATPgrasp_Ter PF15632.1 gi|289937522|ref|YP_003482124.1| - 1.6e-16 59.9 0.1 4.9e-16 58.3 0.0 1.6 1 1 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_4 PF13535.1 gi|289937522|ref|YP_003482124.1| - 6.6e-15 55.3 1.2 9.5e-15 54.7 0.3 1.6 2 0 0 2 2 2 1 ATP-grasp domain Dala_Dala_lig_C PF07478.8 gi|289937522|ref|YP_003482124.1| - 5.5e-08 32.4 0.0 1.6e-07 30.8 0.0 1.8 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus ATP-grasp PF02222.17 gi|289937522|ref|YP_003482124.1| - 2.7e-07 30.0 0.2 7.4e-07 28.6 0.0 1.7 2 0 0 2 2 2 1 ATP-grasp domain GARS_A PF01071.14 gi|289937522|ref|YP_003482124.1| - 2.3e-05 24.0 0.0 3.9e-05 23.2 0.0 1.4 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATP-grasp_3 PF02655.9 gi|289937522|ref|YP_003482124.1| - 0.00062 19.6 0.1 0.002 17.9 0.0 1.9 1 1 0 1 1 1 1 ATP-grasp domain TMP-TENI PF02581.12 gi|289937522|ref|YP_003482124.1| - 0.0021 17.1 0.6 0.39 9.8 0.1 2.3 2 0 0 2 2 2 2 Thiamine monophosphate synthase/TENI ATP-grasp_5 PF13549.1 gi|289937522|ref|YP_003482124.1| - 0.028 13.6 0.0 0.056 12.6 0.0 1.4 1 0 0 1 1 1 0 ATP-grasp domain ATP-grasp_2 PF08442.5 gi|289937522|ref|YP_003482124.1| - 0.093 12.0 0.2 0.16 11.3 0.1 1.3 1 0 0 1 1 1 0 ATP-grasp domain LamB_YcsF PF03746.11 gi|289937523|ref|YP_003482125.1| - 1.6e-83 279.5 0.1 1.8e-83 279.3 0.0 1.0 1 0 0 1 1 1 1 LamB/YcsF family Polysacc_deac_2 PF04748.8 gi|289937523|ref|YP_003482125.1| - 0.015 14.3 0.0 4.6 6.1 0.0 2.4 2 0 0 2 2 2 0 Divergent polysaccharide deacetylase DZR PF12773.2 gi|289937524|ref|YP_003482126.1| - 0.034 13.9 2.3 0.045 13.5 1.6 1.1 1 0 0 1 1 1 0 Double zinc ribbon DUF454 PF04304.8 gi|289937524|ref|YP_003482126.1| - 0.1 12.6 0.4 0.13 12.3 0.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF454) zf-ribbon_3 PF13248.1 gi|289937524|ref|YP_003482126.1| - 0.18 11.0 5.6 0.55 9.5 3.7 1.8 1 1 1 2 2 2 0 zinc-ribbon domain Pyr_redox_2 PF07992.9 gi|289937525|ref|YP_003482127.1| - 6.2e-14 52.3 0.0 8.6e-14 51.8 0.0 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.1 gi|289937525|ref|YP_003482127.1| - 0.00033 20.4 2.6 0.18 11.5 0.0 3.3 2 1 1 3 3 3 2 FAD-NAD(P)-binding DUF1344 PF07076.6 gi|289937525|ref|YP_003482127.1| - 0.0012 18.3 2.1 0.69 9.5 0.2 2.7 2 0 0 2 2 2 2 Protein of unknown function (DUF1344) Pyr_redox_3 PF13738.1 gi|289937525|ref|YP_003482127.1| - 0.012 15.6 0.1 2.8 7.9 0.0 2.8 4 0 0 4 4 4 0 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.9 gi|289937525|ref|YP_003482127.1| - 0.017 13.8 0.6 0.017 13.8 0.4 2.3 3 0 0 3 3 3 0 Tryptophan halogenase DUF1641 PF07849.6 gi|289937526|ref|YP_003482128.1| - 2.4e-12 46.2 0.4 6.4e-12 44.8 0.1 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF1641) INCA1 PF15142.1 gi|289937526|ref|YP_003482128.1| - 0.026 14.3 0.0 0.04 13.7 0.0 1.3 1 0 0 1 1 1 0 INCA1 GatB_Yqey PF02637.13 gi|289937526|ref|YP_003482128.1| - 0.099 12.3 0.0 0.22 11.2 0.0 1.5 1 0 0 1 1 1 0 GatB domain Bac_Ubq_Cox PF01654.12 gi|289937527|ref|YP_003482129.1| - 1.5e-133 445.4 24.4 1.9e-133 445.0 16.9 1.0 1 0 0 1 1 1 1 Bacterial Cytochrome Ubiquinol Oxidase Cyto_ox_2 PF02322.10 gi|289937528|ref|YP_003482130.1| - 5.5e-66 222.9 33.8 1.2e-65 221.8 23.4 1.5 1 1 0 1 1 1 1 Cytochrome oxidase subunit II DUF2593 PF10767.4 gi|289937528|ref|YP_003482130.1| - 0.16 11.6 4.7 0.33 10.6 3.3 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2593) Biotin_lipoyl PF00364.17 gi|289937529|ref|YP_003482131.1| - 2.6e-19 68.6 0.0 2.9e-19 68.4 0.0 1.0 1 0 0 1 1 1 1 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.1 gi|289937529|ref|YP_003482131.1| - 2.2e-05 24.0 0.0 0.34 10.6 0.0 2.6 3 0 0 3 3 3 2 Biotin-lipoyl like GCV_H PF01597.14 gi|289937529|ref|YP_003482131.1| - 0.0025 17.5 0.2 0.0032 17.1 0.1 1.2 1 0 0 1 1 1 1 Glycine cleavage H-protein HlyD_2 PF12700.2 gi|289937529|ref|YP_003482131.1| - 0.016 14.4 0.0 0.036 13.2 0.0 1.6 1 1 1 2 2 2 0 HlyD family secretion protein RnfC_N PF13375.1 gi|289937529|ref|YP_003482131.1| - 0.031 14.0 0.0 0.038 13.6 0.0 1.2 1 0 0 1 1 1 0 RnfC Barrel sandwich hybrid domain Peptidase_M23 PF01551.17 gi|289937529|ref|YP_003482131.1| - 0.045 13.8 0.0 0.24 11.4 0.0 1.8 1 1 1 2 2 2 0 Peptidase family M23 HlyD PF00529.15 gi|289937529|ref|YP_003482131.1| - 0.058 12.6 0.0 0.086 12.1 0.0 1.3 1 0 0 1 1 1 0 HlyD family secretion protein AHS2 PF02626.10 gi|289937530|ref|YP_003482132.1| - 3.3e-93 311.9 0.2 3.8e-93 311.7 0.1 1.0 1 0 0 1 1 1 1 Allophanate hydrolase subunit 2 CoA_trans PF01144.18 gi|289937530|ref|YP_003482132.1| - 0.018 14.2 0.1 0.05 12.7 0.1 1.5 1 1 0 1 1 1 0 Coenzyme A transferase AHS1 PF02682.11 gi|289937531|ref|YP_003482133.1| - 4.8e-46 156.7 0.0 6.3e-46 156.3 0.0 1.1 1 0 0 1 1 1 1 Allophanate hydrolase subunit 1 HPPK PF01288.15 gi|289937531|ref|YP_003482133.1| - 0.055 13.1 0.0 0.093 12.4 0.0 1.4 1 0 0 1 1 1 0 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) Arch_ATPase PF01637.13 gi|289937532|ref|YP_003482134.1| - 1.3e-36 126.4 0.0 2e-36 125.8 0.0 1.3 1 0 0 1 1 1 1 Archaeal ATPase DUF234 PF03008.9 gi|289937532|ref|YP_003482134.1| - 3.9e-25 87.8 0.0 1.1e-24 86.4 0.0 1.7 2 0 0 2 2 2 1 Archaea bacterial proteins of unknown function AAA_14 PF13173.1 gi|289937532|ref|YP_003482134.1| - 2.5e-10 40.3 0.0 5.8e-10 39.1 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|289937532|ref|YP_003482134.1| - 2.1e-07 31.1 0.0 4.4e-07 30.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|289937532|ref|YP_003482134.1| - 2e-05 24.6 0.0 8.9e-05 22.5 0.0 2.1 1 1 0 1 1 1 1 AAA ATPase domain HTH_IclR PF09339.5 gi|289937532|ref|YP_003482134.1| - 0.004 16.7 0.2 0.008 15.7 0.1 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_5 PF01022.15 gi|289937532|ref|YP_003482134.1| - 0.022 14.3 0.0 0.11 12.1 0.0 2.1 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family HTH_27 PF13463.1 gi|289937532|ref|YP_003482134.1| - 0.036 14.3 0.1 0.13 12.6 0.0 2.0 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_17 PF12728.2 gi|289937532|ref|YP_003482134.1| - 0.082 13.1 0.0 0.22 11.8 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain AFG1_ATPase PF03969.11 gi|289937532|ref|YP_003482134.1| - 0.089 11.5 0.0 0.14 10.9 0.0 1.2 1 0 0 1 1 1 0 AFG1-like ATPase Ras PF00071.17 gi|289937532|ref|YP_003482134.1| - 0.16 11.3 0.0 0.29 10.5 0.0 1.4 1 0 0 1 1 1 0 Ras family ABC_tran PF00005.22 gi|289937533|ref|YP_003482135.1| - 1.8e-32 112.5 0.0 2.5e-32 112.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|289937533|ref|YP_003482135.1| - 2.8e-21 75.6 0.3 5.7e-21 74.6 0.2 1.6 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|289937533|ref|YP_003482135.1| - 1.1e-06 28.8 0.0 0.00024 21.1 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|289937533|ref|YP_003482135.1| - 3.7e-05 23.7 0.2 7.2e-05 22.8 0.1 1.4 1 0 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.14 gi|289937533|ref|YP_003482135.1| - 0.00026 20.2 0.2 0.00073 18.8 0.2 1.7 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|289937533|ref|YP_003482135.1| - 0.00037 20.6 0.3 0.0023 18.0 0.2 2.1 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|289937533|ref|YP_003482135.1| - 0.0047 16.8 0.1 0.012 15.4 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|289937533|ref|YP_003482135.1| - 0.027 13.9 0.1 0.049 13.1 0.1 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_25 PF13481.1 gi|289937533|ref|YP_003482135.1| - 0.045 13.1 0.7 0.42 9.9 0.2 2.4 2 1 0 2 2 2 0 AAA domain SbcCD_C PF13558.1 gi|289937533|ref|YP_003482135.1| - 0.051 13.4 0.0 0.25 11.2 0.0 2.0 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA PF00004.24 gi|289937533|ref|YP_003482135.1| - 0.056 13.6 0.1 0.21 11.7 0.0 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|289937533|ref|YP_003482135.1| - 0.073 12.8 0.1 0.37 10.5 0.0 2.1 1 1 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_18 PF13238.1 gi|289937533|ref|YP_003482135.1| - 0.089 13.1 0.0 0.31 11.3 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_17 PF13207.1 gi|289937533|ref|YP_003482135.1| - 0.11 13.2 0.0 0.44 11.3 0.0 2.0 2 1 0 2 2 2 0 AAA domain ABC_tran PF00005.22 gi|289937534|ref|YP_003482136.1| - 9.9e-30 103.6 0.0 1.4e-29 103.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|289937534|ref|YP_003482136.1| - 2.8e-19 69.2 0.6 5.4e-19 68.3 0.4 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|289937534|ref|YP_003482136.1| - 3.1e-10 40.5 0.5 1.4e-08 35.1 0.2 2.3 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|289937534|ref|YP_003482136.1| - 0.0011 19.0 0.6 0.0085 16.2 0.4 2.1 1 1 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|289937534|ref|YP_003482136.1| - 0.013 14.9 0.5 0.57 9.5 0.1 2.2 1 1 0 2 2 2 0 AAA-like domain AAA_16 PF13191.1 gi|289937534|ref|YP_003482136.1| - 0.13 12.2 0.2 0.39 10.6 0.1 2.1 1 1 0 1 1 1 0 AAA ATPase domain AAA_25 PF13481.1 gi|289937534|ref|YP_003482136.1| - 0.13 11.6 0.3 8.5 5.7 0.0 2.5 2 1 0 2 2 2 0 AAA domain AAA_29 PF13555.1 gi|289937534|ref|YP_003482136.1| - 0.17 11.4 0.0 0.32 10.5 0.0 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain BPD_transp_1 PF00528.17 gi|289937535|ref|YP_003482137.1| - 1.6e-30 105.9 7.0 1.6e-30 105.9 4.9 1.8 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|289937535|ref|YP_003482137.1| - 2.5e-11 42.7 0.2 2.5e-11 42.7 0.2 3.0 4 0 0 4 4 4 1 N-terminal TM domain of oligopeptide transport permease C DUF1028 PF06267.7 gi|289937536|ref|YP_003482138.1| - 2.6e-47 160.6 0.0 3.1e-47 160.4 0.0 1.0 1 0 0 1 1 1 1 Family of unknown function (DUF1028) BPD_transp_1 PF00528.17 gi|289937537|ref|YP_003482139.1| - 2e-42 144.8 15.9 2e-42 144.8 11.0 1.9 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_5 PF00496.17 gi|289937538|ref|YP_003482140.1| - 3.6e-70 236.6 0.3 5.2e-70 236.1 0.2 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle Peptidase_M24 PF00557.19 gi|289937539|ref|YP_003482141.1| - 6.8e-37 127.0 0.1 9.2e-37 126.6 0.0 1.2 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.13 gi|289937539|ref|YP_003482141.1| - 1.8e-12 47.8 0.0 3.7e-12 46.8 0.0 1.6 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain Peptidase_M24 PF00557.19 gi|289937540|ref|YP_003482142.1| - 2.5e-29 102.3 3.0 5.4e-29 101.2 1.6 1.8 1 1 1 2 2 2 1 Metallopeptidase family M24 HTH_10 PF04967.7 gi|289937541|ref|YP_003482143.1| - 3.6e-20 71.2 0.0 7e-20 70.3 0.0 1.5 1 0 0 1 1 1 1 HTH DNA binding domain HTH_20 PF12840.2 gi|289937541|ref|YP_003482143.1| - 0.0029 17.3 0.1 0.022 14.5 0.1 2.4 1 1 1 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|289937541|ref|YP_003482143.1| - 0.0089 15.6 0.0 0.025 14.2 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family PsbN PF02468.10 gi|289937541|ref|YP_003482143.1| - 0.065 12.8 0.0 0.17 11.5 0.0 1.6 1 0 0 1 1 1 0 Photosystem II reaction centre N protein (psbN) MarR_2 PF12802.2 gi|289937541|ref|YP_003482143.1| - 0.077 12.6 0.1 0.67 9.6 0.0 2.5 2 0 0 2 2 2 0 MarR family HTH_24 PF13412.1 gi|289937541|ref|YP_003482143.1| - 0.1 11.9 0.0 0.21 11.0 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.5 gi|289937541|ref|YP_003482143.1| - 0.11 12.1 0.0 11 5.6 0.0 2.7 2 0 0 2 2 2 0 IclR helix-turn-helix domain Pro_dh PF01619.13 gi|289937542|ref|YP_003482144.1| - 6e-35 120.7 0.1 2e-34 119.0 0.1 1.7 1 1 0 1 1 1 1 Proline dehydrogenase PqqD PF05402.7 gi|289937542|ref|YP_003482144.1| - 0.0091 15.9 0.1 0.043 13.8 0.0 2.1 2 0 0 2 2 2 1 Coenzyme PQQ synthesis protein D (PqqD) Aldedh PF00171.17 gi|289937543|ref|YP_003482145.1| - 1.5e-143 478.5 0.0 1.7e-143 478.3 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.9 gi|289937543|ref|YP_003482145.1| - 0.075 11.7 0.0 0.16 10.6 0.0 1.5 1 1 0 1 1 1 0 Acyl-CoA reductase (LuxC) IclR PF01614.13 gi|289937544|ref|YP_003482146.1| - 2.8e-28 98.1 0.0 4.7e-27 94.2 0.0 2.1 2 0 0 2 2 2 1 Bacterial transcriptional regulator HTH_IclR PF09339.5 gi|289937544|ref|YP_003482146.1| - 1.3e-11 43.8 0.0 1.5e-10 40.5 0.0 2.5 3 0 0 3 3 3 1 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|289937544|ref|YP_003482146.1| - 8.2e-08 31.5 0.8 4.1e-07 29.2 0.0 2.5 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|289937544|ref|YP_003482146.1| - 1.5e-06 27.8 0.3 1.2e-05 25.0 0.1 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|289937544|ref|YP_003482146.1| - 1.4e-05 24.6 0.0 0.0002 20.9 0.0 2.7 4 0 0 4 4 3 1 MarR family HTH_5 PF01022.15 gi|289937544|ref|YP_003482146.1| - 0.00012 21.6 0.1 0.00045 19.8 0.0 2.0 2 0 0 2 2 1 1 Bacterial regulatory protein, arsR family HTH_40 PF14493.1 gi|289937544|ref|YP_003482146.1| - 0.00017 21.7 0.0 0.00036 20.6 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.1 gi|289937544|ref|YP_003482146.1| - 0.00061 20.0 0.3 0.0057 16.9 0.0 2.5 3 0 0 3 3 2 1 Winged helix DNA-binding domain B-block_TFIIIC PF04182.7 gi|289937544|ref|YP_003482146.1| - 0.00065 19.5 0.0 0.0011 18.7 0.0 1.4 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC MarR PF01047.17 gi|289937544|ref|YP_003482146.1| - 0.0023 17.6 0.1 0.0062 16.2 0.0 1.7 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.7 gi|289937544|ref|YP_003482146.1| - 0.0026 17.3 0.1 0.035 13.7 0.0 2.5 2 0 0 2 2 2 1 HTH domain HTH_9 PF08221.6 gi|289937544|ref|YP_003482146.1| - 0.0055 16.5 0.0 0.023 14.5 0.0 2.1 2 0 0 2 2 2 1 RNA polymerase III subunit RPC82 helix-turn-helix domain TrmB PF01978.14 gi|289937544|ref|YP_003482146.1| - 0.015 15.0 0.0 0.079 12.6 0.0 2.1 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_10 PF04967.7 gi|289937544|ref|YP_003482146.1| - 0.024 14.1 0.2 0.086 12.4 0.0 2.0 2 0 0 2 2 2 0 HTH DNA binding domain HTH_34 PF13601.1 gi|289937544|ref|YP_003482146.1| - 0.026 14.5 0.5 0.15 12.1 0.0 2.5 2 1 0 2 2 2 0 Winged helix DNA-binding domain Sulfolobus_pRN PF05584.6 gi|289937544|ref|YP_003482146.1| - 0.033 14.1 0.1 0.066 13.1 0.1 1.4 1 0 0 1 1 1 0 Sulfolobus plasmid regulatory protein SpoIIID PF12116.3 gi|289937544|ref|YP_003482146.1| - 0.041 13.8 0.1 0.12 12.3 0.0 1.8 2 0 0 2 2 1 0 Stage III sporulation protein D SMC_Nse1 PF07574.8 gi|289937544|ref|YP_003482146.1| - 0.045 13.3 0.1 0.084 12.4 0.0 1.5 1 0 0 1 1 1 0 Nse1 non-SMC component of SMC5-6 complex RepL PF05732.6 gi|289937544|ref|YP_003482146.1| - 0.069 12.3 0.1 0.13 11.4 0.1 1.4 1 1 0 1 1 1 0 Firmicute plasmid replication protein (RepL) A2M_recep PF07677.9 gi|289937544|ref|YP_003482146.1| - 0.075 13.2 0.0 0.13 12.4 0.0 1.3 1 0 0 1 1 1 0 A-macroglobulin receptor HTH_45 PF14947.1 gi|289937544|ref|YP_003482146.1| - 0.078 12.7 0.0 0.16 11.7 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_36 PF13730.1 gi|289937544|ref|YP_003482146.1| - 0.098 12.8 0.0 0.19 11.8 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain LexA_DNA_bind PF01726.11 gi|289937544|ref|YP_003482146.1| - 0.13 11.8 0.0 0.37 10.3 0.0 1.7 1 0 0 1 1 1 0 LexA DNA binding domain M20_dimer PF07687.9 gi|289937546|ref|YP_003482148.1| - 6.5e-09 35.5 0.0 2e-08 33.9 0.0 1.8 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M20 PF01546.23 gi|289937546|ref|YP_003482148.1| - 1.9e-06 27.5 0.3 2.7e-06 27.0 0.2 1.4 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 DUF2627 PF11118.3 gi|289937548|ref|YP_003482150.1| - 1.8 8.7 4.2 1.8 8.7 1.6 2.1 2 1 0 2 2 2 0 Protein of unknown function (DUF2627) ALS_ss_C PF10369.4 gi|289937549|ref|YP_003482151.1| - 0.054 13.2 0.0 0.089 12.5 0.0 1.3 1 0 0 1 1 1 0 Small subunit of acetolactate synthase Secretin_N PF03958.12 gi|289937549|ref|YP_003482151.1| - 0.091 12.9 0.0 0.14 12.3 0.0 1.3 1 0 0 1 1 1 0 Bacterial type II/III secretion system short domain HATPase_c PF02518.21 gi|289937550|ref|YP_003482152.1| - 2.9e-30 104.2 0.0 5.7e-30 103.2 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.5 gi|289937550|ref|YP_003482152.1| - 2.4e-18 66.1 0.3 7e-11 42.1 0.0 2.8 2 0 0 2 2 2 2 PAS fold PAS_3 PF08447.6 gi|289937550|ref|YP_003482152.1| - 3.6e-17 62.2 8.8 3.8e-16 58.9 0.2 4.4 4 1 0 4 4 4 1 PAS fold PAS_9 PF13426.1 gi|289937550|ref|YP_003482152.1| - 4.3e-17 62.3 0.1 5.8e-08 33.0 0.0 2.5 2 0 0 2 2 2 2 PAS domain GAF PF01590.21 gi|289937550|ref|YP_003482152.1| - 8.6e-12 45.4 0.0 1.7e-11 44.5 0.0 1.5 1 0 0 1 1 1 1 GAF domain HisKA PF00512.20 gi|289937550|ref|YP_003482152.1| - 2.7e-10 40.1 0.1 7.2e-10 38.7 0.1 1.8 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS PF00989.19 gi|289937550|ref|YP_003482152.1| - 1.1e-09 38.0 1.2 0.00042 20.0 0.0 2.8 3 0 0 3 3 3 2 PAS fold GAF_3 PF13492.1 gi|289937550|ref|YP_003482152.1| - 5.3e-09 36.2 0.2 1.3e-08 35.0 0.0 1.8 2 0 0 2 2 1 1 GAF domain GAF_2 PF13185.1 gi|289937550|ref|YP_003482152.1| - 2.7e-07 31.1 0.9 2.2e-06 28.2 0.1 2.4 2 0 0 2 2 2 1 GAF domain HATPase_c_5 PF14501.1 gi|289937550|ref|YP_003482152.1| - 0.00028 20.5 0.0 0.00062 19.4 0.0 1.5 1 0 0 1 1 1 1 GHKL domain PAS_8 PF13188.1 gi|289937550|ref|YP_003482152.1| - 0.001 18.8 0.0 3.5 7.6 0.0 3.2 2 0 0 2 2 2 2 PAS domain HATPase_c_2 PF13581.1 gi|289937550|ref|YP_003482152.1| - 0.0024 17.6 0.0 0.0057 16.4 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain BpuJI_N PF11564.3 gi|289937550|ref|YP_003482152.1| - 0.004 16.1 0.1 0.0079 15.1 0.1 1.4 1 0 0 1 1 1 1 Restriction endonuclease BpuJI - N terminal YqzH PF14164.1 gi|289937550|ref|YP_003482152.1| - 0.065 13.1 0.1 3.1 7.7 0.0 2.6 2 0 0 2 2 2 0 YqzH-like protein Amidohydro_2 PF04909.9 gi|289937553|ref|YP_003482155.1| - 1.2e-22 80.7 8.7 1.6e-22 80.3 6.0 1.2 1 0 0 1 1 1 1 Amidohydrolase DUF1510 PF07423.6 gi|289937553|ref|YP_003482155.1| - 0.017 14.4 20.6 0.023 14.0 14.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1510) SAPS PF04499.10 gi|289937553|ref|YP_003482155.1| - 0.42 9.2 9.3 0.51 8.9 6.4 1.1 1 0 0 1 1 1 0 SIT4 phosphatase-associated protein Nop14 PF04147.7 gi|289937553|ref|YP_003482155.1| - 0.5 8.2 36.3 0.64 7.8 25.1 1.1 1 0 0 1 1 1 0 Nop14-like family Daxx PF03344.10 gi|289937553|ref|YP_003482155.1| - 9.2 4.6 32.8 13 4.1 22.8 1.2 1 0 0 1 1 1 0 Daxx Family Cad PF03596.8 gi|289937554|ref|YP_003482156.1| - 2.2e-15 56.8 8.6 2.8e-15 56.5 6.0 1.2 1 0 0 1 1 1 1 Cadmium resistance transporter EamA PF00892.15 gi|289937555|ref|YP_003482157.1| - 1.8e-14 53.8 15.9 2.2e-14 53.5 11.0 1.1 1 0 0 1 1 1 1 EamA-like transporter family EmrE PF13536.1 gi|289937555|ref|YP_003482157.1| - 0.0065 16.6 14.2 0.0065 16.6 9.8 1.6 2 0 0 2 2 2 1 Multidrug resistance efflux transporter TPT PF03151.11 gi|289937555|ref|YP_003482157.1| - 0.053 13.1 15.3 0.12 11.9 10.7 1.7 1 1 0 1 1 1 0 Triose-phosphate Transporter family DUF3366 PF11846.3 gi|289937555|ref|YP_003482157.1| - 1.4 8.7 6.2 0.44 10.4 0.8 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF3366) ABC2_membrane_2 PF12679.2 gi|289937557|ref|YP_003482159.1| - 1.1e-26 93.3 16.7 2.7e-26 92.0 11.6 1.6 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|289937557|ref|YP_003482159.1| - 6.5e-12 45.1 23.9 8.3e-12 44.7 16.4 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|289937557|ref|YP_003482159.1| - 7e-06 25.3 23.7 7e-06 25.3 16.4 1.7 1 1 1 2 2 2 1 ABC-2 family transporter protein DUF2752 PF10825.3 gi|289937557|ref|YP_003482159.1| - 0.39 10.7 0.0 0.39 10.7 0.0 3.2 4 1 1 5 5 5 0 Protein of unknown function (DUF2752) ABC_tran PF00005.22 gi|289937558|ref|YP_003482160.1| - 4.3e-32 111.2 0.0 9.7e-32 110.1 0.0 1.6 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|289937558|ref|YP_003482160.1| - 6.8e-14 52.5 0.0 2.1e-09 37.7 0.0 2.2 1 1 1 2 2 2 2 AAA domain DUF4162 PF13732.1 gi|289937558|ref|YP_003482160.1| - 3.3e-06 27.5 0.1 6.3e-06 26.6 0.1 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) SbcCD_C PF13558.1 gi|289937558|ref|YP_003482160.1| - 0.002 18.0 0.0 0.02 14.8 0.0 2.2 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_16 PF13191.1 gi|289937558|ref|YP_003482160.1| - 0.0035 17.3 0.3 0.023 14.6 0.2 2.0 1 1 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.1 gi|289937558|ref|YP_003482160.1| - 0.0065 16.8 0.1 0.043 14.1 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_10 PF12846.2 gi|289937558|ref|YP_003482160.1| - 0.007 15.8 0.1 1.2 8.4 0.0 2.8 2 1 1 3 3 3 1 AAA-like domain AAA_29 PF13555.1 gi|289937558|ref|YP_003482160.1| - 0.0075 15.7 0.0 0.016 14.7 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_25 PF13481.1 gi|289937558|ref|YP_003482160.1| - 0.0079 15.6 0.3 0.38 10.1 0.0 2.9 2 1 0 2 2 2 1 AAA domain 3HCDH_N PF02737.13 gi|289937558|ref|YP_003482160.1| - 0.0089 15.6 0.6 0.017 14.7 0.4 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AAA_22 PF13401.1 gi|289937558|ref|YP_003482160.1| - 0.027 14.6 0.0 0.15 12.2 0.0 2.1 1 1 0 1 1 1 0 AAA domain SMC_N PF02463.14 gi|289937558|ref|YP_003482160.1| - 0.065 12.4 0.0 6.1 6.0 0.0 2.5 2 1 1 3 3 3 0 RecF/RecN/SMC N terminal domain ClpB_D2-small PF10431.4 gi|289937558|ref|YP_003482160.1| - 0.07 13.0 0.0 12 5.8 0.0 2.6 2 0 0 2 2 2 0 C-terminal, D2-small domain, of ClpB protein AAA_33 PF13671.1 gi|289937558|ref|YP_003482160.1| - 0.093 12.6 0.0 0.26 11.1 0.0 1.8 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.1 gi|289937558|ref|YP_003482160.1| - 0.13 11.2 0.0 1.1 8.2 0.0 1.9 2 0 0 2 2 2 0 AAA ATPase domain HTH_20 PF12840.2 gi|289937560|ref|YP_003482162.1| - 6.2e-14 51.5 0.0 9e-14 51.0 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|289937560|ref|YP_003482162.1| - 1.8e-08 33.6 0.0 2.7e-08 33.0 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|289937560|ref|YP_003482162.1| - 1.6e-07 30.8 0.0 1.6e-06 27.6 0.0 2.1 2 0 0 2 2 2 1 MarR family HTH_5 PF01022.15 gi|289937560|ref|YP_003482162.1| - 3.1e-07 29.9 0.0 5.1e-07 29.2 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|289937560|ref|YP_003482162.1| - 2.7e-05 23.8 0.0 4.3e-05 23.1 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.1 gi|289937560|ref|YP_003482162.1| - 0.0037 17.5 0.0 0.0066 16.7 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_11 PF08279.7 gi|289937560|ref|YP_003482162.1| - 0.0084 15.7 0.0 0.013 15.1 0.0 1.3 1 0 0 1 1 1 1 HTH domain MarR PF01047.17 gi|289937560|ref|YP_003482162.1| - 0.014 15.0 0.0 0.025 14.3 0.0 1.4 1 0 0 1 1 1 0 MarR family HTH_34 PF13601.1 gi|289937560|ref|YP_003482162.1| - 0.058 13.4 0.0 0.1 12.6 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF2250 PF10007.4 gi|289937560|ref|YP_003482162.1| - 0.058 13.3 0.0 0.085 12.7 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) Bot1p PF12298.3 gi|289937560|ref|YP_003482162.1| - 0.099 12.5 0.0 0.17 11.7 0.0 1.3 1 0 0 1 1 1 0 Eukaryotic mitochondrial regulator protein GerE PF00196.14 gi|289937560|ref|YP_003482162.1| - 0.11 11.7 0.0 0.2 11.0 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family Phage_rep_org_N PF09681.5 gi|289937560|ref|YP_003482162.1| - 0.13 11.8 0.0 0.18 11.3 0.0 1.2 1 0 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) HTH_Crp_2 PF13545.1 gi|289937560|ref|YP_003482162.1| - 0.14 11.9 0.0 0.24 11.2 0.0 1.3 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Cad PF03596.8 gi|289937561|ref|YP_003482163.1| - 1.4e-14 54.2 2.7 2.5e-14 53.4 1.9 1.3 1 1 0 1 1 1 1 Cadmium resistance transporter OrfB_IS605 PF01385.14 gi|289937562|ref|YP_003482164.1| - 7.4e-63 211.9 0.1 9.9e-63 211.5 0.0 1.2 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|289937562|ref|YP_003482164.1| - 2.8e-17 62.1 0.2 5.9e-17 61.0 0.1 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain DHH PF01368.15 gi|289937563|ref|YP_003482165.1| - 6.3e-33 113.4 0.0 1.1e-32 112.6 0.0 1.4 1 0 0 1 1 1 1 DHH family DHHA2 PF02833.9 gi|289937563|ref|YP_003482165.1| - 1e-32 112.9 0.1 1.5e-32 112.4 0.1 1.2 1 0 0 1 1 1 1 DHHA2 domain Abi PF02517.11 gi|289937564|ref|YP_003482166.1| - 4.4e-10 39.5 21.8 2.5e-09 37.1 12.1 3.0 2 1 0 2 2 2 1 CAAX protease self-immunity NAD_binding_2 PF03446.10 gi|289937565|ref|YP_003482167.1| - 2.3e-17 63.2 0.0 3.2e-17 62.8 0.0 1.1 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.12 gi|289937565|ref|YP_003482167.1| - 9.2e-09 35.6 0.1 1.6e-08 34.8 0.0 1.4 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Shikimate_DH PF01488.15 gi|289937565|ref|YP_003482167.1| - 1e-06 28.8 0.1 1.8e-06 28.0 0.0 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase ApbA PF02558.11 gi|289937565|ref|YP_003482167.1| - 2.3e-05 23.8 0.0 3.4e-05 23.3 0.0 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA 2-Hacid_dh_C PF02826.14 gi|289937565|ref|YP_003482167.1| - 5.9e-05 22.3 0.0 8.2e-05 21.8 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.18 gi|289937565|ref|YP_003482167.1| - 0.0003 20.5 0.3 0.00067 19.4 0.2 1.7 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Saccharop_dh PF03435.13 gi|289937565|ref|YP_003482167.1| - 0.0013 17.7 0.1 0.002 17.1 0.0 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase 3HCDH_N PF02737.13 gi|289937565|ref|YP_003482167.1| - 0.0029 17.2 0.0 0.0092 15.6 0.0 1.8 1 1 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TrkA_N PF02254.13 gi|289937565|ref|YP_003482167.1| - 0.0046 16.9 0.0 0.0089 16.0 0.0 1.5 1 1 0 1 1 1 1 TrkA-N domain IlvN PF07991.7 gi|289937565|ref|YP_003482167.1| - 0.026 13.8 0.0 0.037 13.4 0.0 1.2 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain NAD_binding_3 PF03447.11 gi|289937565|ref|YP_003482167.1| - 0.039 14.3 0.1 0.075 13.4 0.1 1.4 1 0 0 1 1 1 0 Homoserine dehydrogenase, NAD binding domain ThiF PF00899.16 gi|289937565|ref|YP_003482167.1| - 0.14 11.9 0.0 0.3 10.8 0.0 1.5 1 0 0 1 1 1 0 ThiF family MASE2 PF05230.6 gi|289937566|ref|YP_003482168.1| - 0.011 15.6 0.1 0.013 15.4 0.1 1.1 1 0 0 1 1 1 0 MASE2 domain DUF308 PF03729.8 gi|289937566|ref|YP_003482168.1| - 0.22 11.5 8.2 2.5 8.1 5.7 2.0 1 1 0 1 1 1 0 Short repeat of unknown function (DUF308) ABC2_membrane_3 PF12698.2 gi|289937566|ref|YP_003482168.1| - 0.94 8.4 3.9 1 8.3 2.7 1.0 1 0 0 1 1 1 0 ABC-2 family transporter protein UPF0066 PF01980.11 gi|289937567|ref|YP_003482169.1| - 8.7e-38 128.9 0.0 1.1e-37 128.6 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0066 RPE65 PF03055.10 gi|289937568|ref|YP_003482170.1| - 4.2e-117 391.6 0.0 4.7e-117 391.5 0.0 1.0 1 0 0 1 1 1 1 Retinal pigment epithelial membrane protein DUF2080 PF09853.4 gi|289937569|ref|YP_003482171.1| - 0.0012 18.4 0.0 0.0015 18.1 0.0 1.1 1 0 0 1 1 1 1 Putative transposon-encoded protein (DUF2080) OrfB_Zn_ribbon PF07282.6 gi|289937570|ref|YP_003482172.1| - 4e-22 77.6 0.5 8.1e-22 76.6 0.3 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|289937570|ref|YP_003482172.1| - 6.7e-06 25.6 0.0 1.2e-05 24.8 0.0 1.5 1 0 0 1 1 1 1 Probable transposase C1_3 PF07649.7 gi|289937570|ref|YP_003482172.1| - 0.15 12.0 1.6 0.31 11.1 1.1 1.5 1 0 0 1 1 1 0 C1-like domain Fer2 PF00111.22 gi|289937571|ref|YP_003482173.1| - 1.2e-08 34.6 0.6 1.6e-08 34.1 0.4 1.2 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_4 PF13510.1 gi|289937571|ref|YP_003482173.1| - 0.00022 20.9 1.6 0.0015 18.3 1.1 2.0 1 1 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain DHODB_Fe-S_bind PF10418.4 gi|289937571|ref|YP_003482173.1| - 0.13 11.7 2.4 0.7 9.4 0.9 2.3 2 0 0 2 2 2 0 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B Fer2_3 PF13085.1 gi|289937571|ref|YP_003482173.1| - 0.15 11.8 0.7 0.23 11.2 0.5 1.4 1 1 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain Saccharop_dh PF03435.13 gi|289937572|ref|YP_003482174.1| - 2.4e-14 53.1 0.0 3.3e-14 52.6 0.0 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase NAD_binding_10 PF13460.1 gi|289937572|ref|YP_003482174.1| - 0.014 15.3 0.0 0.029 14.3 0.0 1.5 1 0 0 1 1 1 0 NADH(P)-binding DUF2760 PF10816.3 gi|289937572|ref|YP_003482174.1| - 0.1 12.0 0.0 0.2 11.1 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF2760) Pyridox_ox_2 PF12900.2 gi|289937573|ref|YP_003482175.1| - 3.5e-18 65.8 0.0 4e-18 65.6 0.0 1.0 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_oxidase PF01243.15 gi|289937573|ref|YP_003482175.1| - 0.00033 20.5 0.0 0.0005 20.0 0.0 1.3 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase CelD_N PF02927.9 gi|289937573|ref|YP_003482175.1| - 0.096 12.9 0.0 0.15 12.3 0.0 1.3 1 0 0 1 1 1 0 N-terminal ig-like domain of cellulase HTH_24 PF13412.1 gi|289937574|ref|YP_003482176.1| - 7.4e-06 25.2 0.0 1.1e-05 24.7 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding DUF2250 PF10007.4 gi|289937574|ref|YP_003482176.1| - 0.0017 18.2 0.0 0.0033 17.2 0.0 1.4 2 0 0 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_5 PF01022.15 gi|289937574|ref|YP_003482176.1| - 0.002 17.7 0.0 0.0028 17.2 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_45 PF14947.1 gi|289937574|ref|YP_003482176.1| - 0.013 15.2 0.0 0.017 14.9 0.0 1.1 1 0 0 1 1 1 0 Winged helix-turn-helix TrmB PF01978.14 gi|289937574|ref|YP_003482176.1| - 0.016 14.9 0.0 0.021 14.5 0.0 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|289937574|ref|YP_003482176.1| - 0.05 13.2 0.0 0.076 12.7 0.0 1.2 1 0 0 1 1 1 0 MarR family z-alpha PF02295.12 gi|289937574|ref|YP_003482176.1| - 0.066 12.9 0.0 0.12 12.1 0.0 1.3 1 0 0 1 1 1 0 Adenosine deaminase z-alpha domain B-block_TFIIIC PF04182.7 gi|289937574|ref|YP_003482176.1| - 0.11 12.3 0.0 0.19 11.6 0.0 1.5 1 1 0 1 1 1 0 B-block binding subunit of TFIIIC RtcB PF01139.12 gi|289937577|ref|YP_003482179.1| - 3.8e-105 352.2 0.0 4.6e-105 352.0 0.0 1.0 1 0 0 1 1 1 1 tRNA-splicing ligase RtcB NAD_binding_4 PF07993.7 gi|289937578|ref|YP_003482180.1| - 6.7e-47 159.5 0.0 8.1e-47 159.2 0.0 1.1 1 0 0 1 1 1 1 Male sterility protein Epimerase PF01370.16 gi|289937578|ref|YP_003482180.1| - 9.1e-19 67.8 0.0 1.1e-18 67.5 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|289937578|ref|YP_003482180.1| - 4.1e-15 55.2 0.0 1.2e-14 53.7 0.0 1.6 2 0 0 2 2 2 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.12 gi|289937578|ref|YP_003482180.1| - 2.6e-06 26.5 0.1 1.8e-05 23.8 0.1 2.0 1 1 0 1 1 1 1 RmlD substrate binding domain NAD_binding_10 PF13460.1 gi|289937578|ref|YP_003482180.1| - 3.7e-05 23.8 0.1 0.00018 21.5 0.1 1.9 1 1 0 1 1 1 1 NADH(P)-binding Polysacc_synt_2 PF02719.10 gi|289937578|ref|YP_003482180.1| - 0.0031 16.4 0.0 0.0048 15.8 0.0 1.3 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein adh_short PF00106.20 gi|289937578|ref|YP_003482180.1| - 0.024 14.5 0.1 0.094 12.6 0.0 1.9 1 1 0 1 1 1 0 short chain dehydrogenase Aldedh PF00171.17 gi|289937579|ref|YP_003482181.1| - 6e-149 496.2 0.0 7e-149 496.0 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.9 gi|289937579|ref|YP_003482181.1| - 8.2e-07 28.0 0.0 1.4e-06 27.3 0.0 1.2 1 0 0 1 1 1 1 Acyl-CoA reductase (LuxC) CARDB PF07705.6 gi|289937580|ref|YP_003482182.1| - 8.3e-25 86.7 45.9 9e-07 28.8 3.7 5.5 4 1 1 5 5 5 4 CARDB Glug PF07581.7 gi|289937580|ref|YP_003482182.1| - 4.1e-09 36.0 58.5 0.0048 17.0 0.0 9.6 9 0 0 9 9 9 4 The GLUG motif SusE PF14292.1 gi|289937580|ref|YP_003482182.1| - 0.007 16.1 2.2 0.007 16.1 1.5 5.3 5 1 1 6 6 6 2 SusE outer membrane protein Alpha_adaptinC2 PF02883.15 gi|289937580|ref|YP_003482182.1| - 0.014 15.7 0.1 0.038 14.3 0.1 1.9 1 0 0 1 1 1 0 Adaptin C-terminal domain 4HBT PF03061.17 gi|289937580|ref|YP_003482182.1| - 0.021 14.9 0.0 19 5.4 0.0 4.1 4 0 0 4 4 4 0 Thioesterase superfamily Sipho_Gp157 PF05565.6 gi|289937580|ref|YP_003482182.1| - 0.041 13.4 1.6 0.083 12.4 1.1 1.5 1 0 0 1 1 1 0 Siphovirus Gp157 CYSTM PF12734.2 gi|289937580|ref|YP_003482182.1| - 0.25 11.4 0.0 0.67 10.0 0.0 1.7 1 0 0 1 1 1 0 Cysteine-rich TM module stress tolerance BsuPI PF12690.2 gi|289937580|ref|YP_003482182.1| - 0.9 9.2 4.7 29 4.4 0.1 4.6 5 0 0 5 5 5 0 Intracellular proteinase inhibitor PAS_4 PF08448.5 gi|289937582|ref|YP_003482184.1| - 1.5e-50 169.8 3.7 1.5e-12 47.5 0.1 4.8 4 0 0 4 4 4 4 PAS fold PAS_9 PF13426.1 gi|289937582|ref|YP_003482184.1| - 1.7e-33 115.0 1.8 1.5e-16 60.6 0.0 4.5 4 0 0 4 4 4 4 PAS domain HATPase_c PF02518.21 gi|289937582|ref|YP_003482184.1| - 1.1e-29 102.3 0.0 3.6e-29 100.7 0.0 1.9 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.19 gi|289937582|ref|YP_003482184.1| - 1e-22 80.0 0.1 3.2e-09 36.5 0.0 4.9 4 1 0 4 4 4 4 PAS fold PAS_10 PF13596.1 gi|289937582|ref|YP_003482184.1| - 3.7e-21 75.3 0.1 0.00093 19.4 0.0 5.2 4 1 0 4 4 4 4 PAS domain PAS_8 PF13188.1 gi|289937582|ref|YP_003482184.1| - 2.2e-15 55.8 0.1 2.7e-07 30.1 0.0 4.4 4 0 0 4 4 4 2 PAS domain HisKA PF00512.20 gi|289937582|ref|YP_003482184.1| - 2.6e-11 43.3 0.4 1.5e-10 40.9 0.0 2.6 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_3 PF08447.6 gi|289937582|ref|YP_003482184.1| - 1.9e-07 31.0 0.4 0.0041 17.1 0.0 4.1 3 1 0 3 3 3 2 PAS fold PAS_7 PF12860.2 gi|289937582|ref|YP_003482184.1| - 1e-06 28.7 2.4 0.01 15.8 0.0 5.0 5 2 0 5 5 4 2 PAS fold HATPase_c_5 PF14501.1 gi|289937582|ref|YP_003482184.1| - 8.4e-06 25.4 0.0 1.9e-05 24.2 0.0 1.5 1 0 0 1 1 1 1 GHKL domain HATPase_c_2 PF13581.1 gi|289937582|ref|YP_003482184.1| - 0.00015 21.5 0.1 0.00042 20.1 0.1 1.7 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HTH_20 PF12840.2 gi|289937582|ref|YP_003482184.1| - 0.016 15.0 0.1 0.043 13.6 0.1 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain TrmB PF01978.14 gi|289937582|ref|YP_003482184.1| - 0.042 13.5 0.0 0.13 11.9 0.0 1.8 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|289937582|ref|YP_003482184.1| - 0.087 12.4 0.1 0.19 11.3 0.1 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain Lactamase_B PF00753.22 gi|289937583|ref|YP_003482185.1| - 2.8e-08 33.6 13.2 4e-08 33.1 8.6 1.7 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily DUF1510 PF07423.6 gi|289937583|ref|YP_003482185.1| - 6e-05 22.5 1.6 0.00013 21.4 1.1 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF1510) Lactamase_B_2 PF12706.2 gi|289937583|ref|YP_003482185.1| - 7.5e-05 22.3 1.4 0.0001 21.8 1.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|289937583|ref|YP_003482185.1| - 0.011 15.4 1.5 0.027 14.1 0.3 2.1 1 1 1 2 2 2 0 Beta-lactamase superfamily domain SpoIIIAH PF12685.2 gi|289937583|ref|YP_003482185.1| - 0.014 14.9 1.7 0.014 14.9 1.1 1.8 2 0 0 2 2 2 0 SpoIIIAH-like protein LPAM_1 PF08139.7 gi|289937583|ref|YP_003482185.1| - 0.056 13.6 4.7 0.093 12.9 3.3 1.3 1 0 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site Trypan_PARP PF05887.6 gi|289937583|ref|YP_003482185.1| - 0.3 10.8 8.0 0.11 12.2 2.7 2.1 2 0 0 2 2 2 0 Procyclic acidic repetitive protein (PARP) Podoplanin PF05808.6 gi|289937583|ref|YP_003482185.1| - 1.2 8.6 10.4 0.024 14.1 2.3 1.8 2 1 0 2 2 2 0 Podoplanin TRAP_alpha PF03896.11 gi|289937583|ref|YP_003482185.1| - 3.5 6.5 12.9 0.074 12.0 4.2 1.7 2 0 0 2 2 2 0 Translocon-associated protein (TRAP), alpha subunit DUF3006 PF11213.3 gi|289937584|ref|YP_003482186.1| - 2.7e-12 46.2 1.4 3.1e-12 46.0 0.9 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3006) Nuc_deoxyrib_tr PF05014.10 gi|289937584|ref|YP_003482186.1| - 0.076 12.8 0.0 0.082 12.7 0.0 1.1 1 0 0 1 1 1 0 Nucleoside 2-deoxyribosyltransferase OrfB_Zn_ribbon PF07282.6 gi|289937585|ref|YP_003482187.1| - 1.7e-22 78.8 0.3 4.1e-22 77.6 0.2 1.7 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|289937585|ref|YP_003482187.1| - 1e-05 25.0 0.0 1.7e-05 24.3 0.0 1.3 1 0 0 1 1 1 1 Probable transposase Y1_Tnp PF01797.11 gi|289937586|ref|YP_003482188.1| - 2.8e-36 124.0 0.6 3.1e-36 123.8 0.4 1.0 1 0 0 1 1 1 1 Transposase IS200 like ABC2_membrane PF01061.19 gi|289937587|ref|YP_003482189.1| - 1e-31 109.7 14.5 1e-31 109.7 10.1 1.4 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|289937587|ref|YP_003482189.1| - 2.8e-18 66.0 15.5 2.8e-18 66.0 10.7 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|289937587|ref|YP_003482189.1| - 6.2e-08 32.0 15.9 8.2e-08 31.6 11.0 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC_tran PF00005.22 gi|289937588|ref|YP_003482190.1| - 1.4e-29 103.1 0.0 2.4e-29 102.3 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|289937588|ref|YP_003482190.1| - 3.9e-17 63.1 0.0 3.1e-10 40.4 0.0 2.1 1 1 0 2 2 2 2 AAA domain DUF4162 PF13732.1 gi|289937588|ref|YP_003482190.1| - 5.2e-06 26.8 0.0 1.3e-05 25.5 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) SMC_N PF02463.14 gi|289937588|ref|YP_003482190.1| - 9.2e-06 25.0 0.0 0.00012 21.4 0.0 2.5 2 1 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|289937588|ref|YP_003482190.1| - 5.9e-05 23.1 0.1 0.00055 19.9 0.0 2.2 1 1 1 2 2 2 1 AAA ATPase domain AAA_29 PF13555.1 gi|289937588|ref|YP_003482190.1| - 0.0005 19.5 0.1 0.001 18.5 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|289937588|ref|YP_003482190.1| - 0.0012 19.2 0.0 0.0017 18.6 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|289937588|ref|YP_003482190.1| - 0.0013 18.9 0.0 0.019 15.1 0.0 2.4 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.1 gi|289937588|ref|YP_003482190.1| - 0.011 16.4 0.1 0.053 14.3 0.1 2.2 1 1 0 1 1 1 0 AAA domain AAA_15 PF13175.1 gi|289937588|ref|YP_003482190.1| - 0.013 14.5 0.0 3.8 6.4 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain AAA_5 PF07728.9 gi|289937588|ref|YP_003482190.1| - 0.021 14.5 0.0 0.13 11.9 0.0 2.1 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_33 PF13671.1 gi|289937588|ref|YP_003482190.1| - 0.022 14.6 0.5 0.13 12.1 0.2 2.4 1 1 1 2 2 2 0 AAA domain SbcCD_C PF13558.1 gi|289937588|ref|YP_003482190.1| - 0.028 14.3 0.0 0.15 11.9 0.0 2.3 2 1 0 2 2 1 0 Putative exonuclease SbcCD, C subunit AAA_22 PF13401.1 gi|289937588|ref|YP_003482190.1| - 0.032 14.3 0.0 0.13 12.4 0.0 2.0 1 1 0 1 1 1 0 AAA domain Rad17 PF03215.10 gi|289937588|ref|YP_003482190.1| - 0.045 12.4 0.0 0.058 12.0 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA_19 PF13245.1 gi|289937588|ref|YP_003482190.1| - 0.075 12.8 0.0 0.22 11.3 0.0 1.8 1 0 0 1 1 1 0 Part of AAA domain SRP54 PF00448.17 gi|289937588|ref|YP_003482190.1| - 0.08 12.3 0.0 0.16 11.4 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Mg_chelatase PF01078.16 gi|289937588|ref|YP_003482190.1| - 0.12 11.5 0.0 0.22 10.6 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI Thymidylate_kin PF02223.12 gi|289937588|ref|YP_003482190.1| - 0.12 11.7 0.0 0.37 10.1 0.0 1.8 2 0 0 2 2 2 0 Thymidylate kinase HTH_10 PF04967.7 gi|289937589|ref|YP_003482191.1| - 5.1e-21 73.9 0.3 1.4e-20 72.6 0.2 1.7 2 0 0 2 2 2 1 HTH DNA binding domain DALR_1 PF05746.10 gi|289937589|ref|YP_003482191.1| - 0.13 12.1 0.1 20 5.1 0.0 2.3 2 0 0 2 2 2 0 DALR anticodon binding domain Lactamase_B PF00753.22 gi|289937590|ref|YP_003482192.1| - 1.1e-19 70.8 10.5 1.1e-19 70.8 7.3 1.5 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily Rhodanese PF00581.15 gi|289937590|ref|YP_003482192.1| - 2.3e-15 56.9 0.0 7e-15 55.3 0.0 1.8 2 0 0 2 2 2 1 Rhodanese-like domain Lactamase_B_2 PF12706.2 gi|289937590|ref|YP_003482192.1| - 0.011 15.3 0.9 0.026 14.0 0.6 1.6 1 1 0 1 1 1 0 Beta-lactamase superfamily domain MFS_1 PF07690.11 gi|289937591|ref|YP_003482193.1| - 1.7e-40 138.8 33.2 1.4e-20 73.3 12.0 2.0 2 0 0 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|289937591|ref|YP_003482193.1| - 1.7e-13 50.0 19.3 1e-07 30.9 5.1 2.2 1 1 1 2 2 2 2 Sugar (and other) transporter PAS PF00989.19 gi|289937592|ref|YP_003482194.1| - 2.4e-08 33.7 0.0 3.4e-08 33.2 0.0 1.2 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.1 gi|289937592|ref|YP_003482194.1| - 1.8e-06 27.6 0.0 4.1e-06 26.4 0.0 1.6 2 0 0 2 2 2 1 PAS domain PAS_9 PF13426.1 gi|289937592|ref|YP_003482194.1| - 3.7e-06 27.2 0.0 5.6e-06 26.6 0.0 1.3 1 0 0 1 1 1 1 PAS domain PAS_4 PF08448.5 gi|289937592|ref|YP_003482194.1| - 6.9e-06 26.0 0.1 1.2e-05 25.2 0.0 1.4 2 0 0 2 2 2 1 PAS fold HATPase_c PF02518.21 gi|289937593|ref|YP_003482195.1| - 6.1e-28 96.7 0.0 1e-27 96.0 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|289937593|ref|YP_003482195.1| - 1.1e-10 41.3 0.1 1.1e-10 41.3 0.1 3.2 2 1 1 3 3 3 1 His Kinase A (phospho-acceptor) domain HATPase_c_5 PF14501.1 gi|289937593|ref|YP_003482195.1| - 1.5e-06 27.8 0.0 5.1e-06 26.1 0.0 1.8 2 0 0 2 2 2 1 GHKL domain HATPase_c_2 PF13581.1 gi|289937593|ref|YP_003482195.1| - 0.00069 19.4 1.0 0.0009 19.0 0.1 1.7 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain ApoLp-III PF07464.6 gi|289937593|ref|YP_003482195.1| - 0.0051 16.8 0.3 2.8 7.9 0.1 2.1 2 0 0 2 2 2 2 Apolipophorin-III precursor (apoLp-III) bZIP_1 PF00170.16 gi|289937593|ref|YP_003482195.1| - 0.038 13.9 1.0 0.038 13.9 0.7 1.7 2 0 0 2 2 2 0 bZIP transcription factor PilJ PF13675.1 gi|289937593|ref|YP_003482195.1| - 0.074 13.3 3.4 0.11 12.7 0.8 2.0 1 1 0 2 2 2 0 Type IV pili methyl-accepting chemotaxis transducer N-term CDC37_N PF03234.9 gi|289937593|ref|YP_003482195.1| - 0.086 13.1 0.2 0.13 12.5 0.2 1.3 1 0 0 1 1 1 0 Cdc37 N terminal kinase binding Peptidase_C15 PF01470.12 gi|289937593|ref|YP_003482195.1| - 0.16 11.7 0.0 0.24 11.1 0.0 1.2 1 0 0 1 1 1 0 Pyroglutamyl peptidase bZIP_2 PF07716.10 gi|289937593|ref|YP_003482195.1| - 0.23 11.3 5.6 0.56 10.0 3.9 1.6 1 0 0 1 1 1 0 Basic region leucine zipper DivIC PF04977.10 gi|289937593|ref|YP_003482195.1| - 3 7.3 5.6 0.66 9.4 1.2 1.8 2 0 0 2 2 2 0 Septum formation initiator GAF_2 PF13185.1 gi|289937595|ref|YP_003482197.1| - 9e-30 104.1 9.7 3.5e-14 53.5 0.2 3.9 4 0 0 4 4 4 3 GAF domain GAF PF01590.21 gi|289937595|ref|YP_003482197.1| - 5.7e-26 91.4 5.4 4.6e-12 46.3 0.1 4.1 3 1 0 3 3 3 3 GAF domain PAS_9 PF13426.1 gi|289937595|ref|YP_003482197.1| - 1.7e-24 86.2 0.1 3e-15 56.4 0.0 3.6 3 0 0 3 3 3 2 PAS domain PAS_4 PF08448.5 gi|289937595|ref|YP_003482197.1| - 1.2e-23 83.2 7.1 1.8e-15 56.8 0.0 3.7 4 0 0 4 4 4 2 PAS fold GAF_3 PF13492.1 gi|289937595|ref|YP_003482197.1| - 2.7e-23 82.4 4.0 1e-08 35.3 0.0 4.3 5 0 0 5 5 5 3 GAF domain PAS PF00989.19 gi|289937595|ref|YP_003482197.1| - 1.8e-16 59.8 0.0 1.2e-09 37.9 0.0 2.7 2 0 0 2 2 2 2 PAS fold HTH_10 PF04967.7 gi|289937595|ref|YP_003482197.1| - 4.6e-16 58.1 0.0 1.1e-15 56.8 0.0 1.7 1 0 0 1 1 1 1 HTH DNA binding domain PAS_8 PF13188.1 gi|289937595|ref|YP_003482197.1| - 1.7e-13 49.8 0.2 5.7e-08 32.3 0.0 3.8 3 0 0 3 3 3 2 PAS domain Sigma70_r4 PF04545.11 gi|289937595|ref|YP_003482197.1| - 0.00067 18.9 0.1 0.0095 15.2 0.1 2.8 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_24 PF13412.1 gi|289937595|ref|YP_003482197.1| - 0.078 12.3 0.0 0.2 11.0 0.0 1.7 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding adh_short PF00106.20 gi|289937595|ref|YP_003482197.1| - 0.19 11.6 0.1 0.19 11.6 0.1 3.2 4 0 0 4 4 4 0 short chain dehydrogenase HTH_20 PF12840.2 gi|289937596|ref|YP_003482198.1| - 0.0078 15.9 0.1 0.025 14.3 0.0 1.8 1 1 0 1 1 1 1 Helix-turn-helix domain DDE_3 PF13358.1 gi|289937597|ref|YP_003482199.1| - 7.4e-28 97.1 0.0 1.6e-27 96.0 0.0 1.6 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_33 PF13592.1 gi|289937597|ref|YP_003482199.1| - 1.6e-22 78.8 1.0 3.5e-21 74.4 0.0 2.5 2 0 0 2 2 2 1 Winged helix-turn helix HTH_29 PF13551.1 gi|289937597|ref|YP_003482199.1| - 1.9e-19 69.8 0.2 1.9e-19 69.8 0.2 2.1 1 1 1 2 2 2 1 Winged helix-turn helix HTH_32 PF13565.1 gi|289937597|ref|YP_003482199.1| - 7.4e-11 42.6 2.3 3.6e-10 40.5 0.1 2.7 2 0 0 2 2 2 1 Homeodomain-like domain HTH_28 PF13518.1 gi|289937597|ref|YP_003482199.1| - 3.2e-09 36.6 0.4 2.5e-08 33.7 0.1 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|289937597|ref|YP_003482199.1| - 0.0008 18.9 0.0 0.0023 17.5 0.0 1.7 1 0 0 1 1 1 1 Homeodomain-like domain rve PF00665.21 gi|289937597|ref|YP_003482199.1| - 0.0011 19.0 0.0 0.0025 17.9 0.0 1.6 1 0 0 1 1 1 1 Integrase core domain DUF2605 PF10792.4 gi|289937597|ref|YP_003482199.1| - 0.0014 18.2 2.0 2.5 7.8 0.0 3.4 4 0 0 4 4 4 2 Protein of unknown function (DUF2605) DDE_Tnp_ISAZ013 PF07592.6 gi|289937597|ref|YP_003482199.1| - 0.0037 16.0 0.0 0.025 13.3 0.0 2.0 2 0 0 2 2 2 1 Rhodopirellula transposase DDE domain HTH_Tnp_IS630 PF01710.11 gi|289937597|ref|YP_003482199.1| - 0.026 14.1 0.1 0.064 12.9 0.0 1.6 1 0 0 1 1 1 0 Transposase CBP4 PF07960.6 gi|289937597|ref|YP_003482199.1| - 0.31 10.6 3.3 0.72 9.4 2.2 1.7 2 0 0 2 2 2 0 CBP4 HATPase_c PF02518.21 gi|289937598|ref|YP_003482200.1| - 8.1e-29 99.5 0.0 7.9e-28 96.4 0.0 2.1 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|289937598|ref|YP_003482200.1| - 4.4e-13 49.0 2.1 1.3e-11 44.3 0.1 2.6 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.5 gi|289937598|ref|YP_003482200.1| - 6.6e-08 32.5 0.1 2.2e-07 30.8 0.0 2.0 2 0 0 2 2 2 1 PAS fold PAS_9 PF13426.1 gi|289937598|ref|YP_003482200.1| - 1.6e-06 28.4 0.0 5.5e-06 26.6 0.0 1.9 2 0 0 2 2 2 1 PAS domain HATPase_c_5 PF14501.1 gi|289937598|ref|YP_003482200.1| - 6.6e-06 25.7 0.0 1.5e-05 24.5 0.0 1.6 1 0 0 1 1 1 1 GHKL domain PAS_10 PF13596.1 gi|289937598|ref|YP_003482200.1| - 3.3e-05 24.1 0.0 7.8e-05 22.8 0.0 1.7 1 0 0 1 1 1 1 PAS domain HATPase_c_3 PF13589.1 gi|289937598|ref|YP_003482200.1| - 0.00093 18.8 0.0 0.002 17.7 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.19 gi|289937598|ref|YP_003482200.1| - 0.0099 15.6 0.2 0.13 12.0 0.0 2.8 2 1 0 2 2 2 1 PAS fold PAS_8 PF13188.1 gi|289937598|ref|YP_003482200.1| - 0.059 13.2 0.1 0.37 10.7 0.0 2.4 2 0 0 2 2 2 0 PAS domain HATPase_c_2 PF13581.1 gi|289937598|ref|YP_003482200.1| - 0.072 12.8 0.0 0.13 12.0 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain DUF3244 PF11589.3 gi|289937598|ref|YP_003482200.1| - 0.11 12.1 0.1 2.3 7.9 0.0 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF3244) DUF1508 PF07411.7 gi|289937599|ref|YP_003482201.1| - 2e-41 139.2 0.0 4.7e-05 22.7 0.0 12.1 12 0 0 12 12 12 11 Domain of unknown function (DUF1508) MalF_P2 PF14785.1 gi|289937599|ref|YP_003482201.1| - 0.0028 17.5 0.0 6.8 6.5 0.0 3.9 4 1 1 5 5 5 2 Maltose transport system permease protein MalF P2 domain DDE_Tnp_IS240 PF13610.1 gi|289937599|ref|YP_003482201.1| - 0.0081 16.1 11.2 7.9 6.4 0.0 6.4 6 2 1 7 7 7 1 DDE domain DUF2914 PF11141.3 gi|289937599|ref|YP_003482201.1| - 0.23 11.0 12.0 0.9 9.1 0.0 5.6 7 0 0 7 7 7 0 Protein of unknown function (DUF2914) Gln-synt_C PF00120.19 gi|289937600|ref|YP_003482202.1| - 1.5e-60 204.5 0.0 1.9e-60 204.1 0.0 1.1 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.14 gi|289937600|ref|YP_003482202.1| - 0.039 13.5 0.7 0.094 12.3 0.1 2.0 2 1 0 2 2 2 0 Glutamine synthetase, beta-Grasp domain Usp PF00582.21 gi|289937601|ref|YP_003482203.1| - 1.3e-26 93.4 15.0 3.3e-16 59.7 0.7 2.1 2 0 0 2 2 2 2 Universal stress protein family OrfB_Zn_ribbon PF07282.6 gi|289937602|ref|YP_003482204.1| - 1.2e-19 69.6 1.8 2.6e-19 68.6 1.2 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|289937602|ref|YP_003482204.1| - 0.00018 21.0 0.2 0.00031 20.2 0.2 1.4 1 0 0 1 1 1 1 Probable transposase IBR PF01485.16 gi|289937602|ref|YP_003482204.1| - 0.00056 19.7 1.9 0.0011 18.7 1.3 1.4 1 0 0 1 1 1 1 IBR domain Tnp_zf-ribbon_2 PF13842.1 gi|289937602|ref|YP_003482204.1| - 0.35 11.3 5.5 0.76 10.2 3.8 1.6 1 0 0 1 1 1 0 DDE_Tnp_1-like zinc-ribbon DinB_2 PF12867.2 gi|289937602|ref|YP_003482204.1| - 0.47 10.8 4.5 0.57 10.5 2.4 1.7 2 0 0 2 2 2 0 DinB superfamily Na_H_Exchanger PF00999.16 gi|289937603|ref|YP_003482205.1| - 2.6e-28 98.6 49.4 3.6e-28 98.1 34.2 1.1 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family TrkA_N PF02254.13 gi|289937603|ref|YP_003482205.1| - 1.7e-13 50.5 0.0 3.3e-13 49.6 0.0 1.5 1 0 0 1 1 1 1 TrkA-N domain Na_H_Exchanger PF00999.16 gi|289937604|ref|YP_003482206.1| - 2.4e-54 184.3 45.1 4.6e-54 183.4 31.3 1.4 1 1 0 1 1 1 1 Sodium/hydrogen exchanger family TrkA_N PF02254.13 gi|289937604|ref|YP_003482206.1| - 1.5e-13 50.7 2.1 1.5e-13 50.7 1.4 1.9 2 0 0 2 2 2 1 TrkA-N domain NAD_binding_7 PF13241.1 gi|289937604|ref|YP_003482206.1| - 0.00049 20.3 0.5 0.0018 18.5 0.3 1.9 1 1 1 2 2 2 1 Putative NAD(P)-binding PsaM PF07465.8 gi|289937604|ref|YP_003482206.1| - 0.0039 16.7 1.9 0.017 14.6 1.3 2.1 1 0 0 1 1 1 1 Photosystem I protein M (PsaM) Shikimate_DH PF01488.15 gi|289937604|ref|YP_003482206.1| - 0.0091 16.0 0.1 0.017 15.2 0.0 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase Gram_pos_anchor PF00746.16 gi|289937606|ref|YP_003482208.1| - 0.15 11.9 0.5 0.26 11.1 0.4 1.5 1 0 0 1 1 1 0 Gram positive anchor OrfB_Zn_ribbon PF07282.6 gi|289937607|ref|YP_003482209.1| - 3.7e-22 77.7 1.4 6.8e-22 76.9 1.0 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|289937607|ref|YP_003482209.1| - 6.8e-18 64.9 0.0 1.4e-17 63.8 0.0 1.5 2 0 0 2 2 2 1 Probable transposase DUF2357 PF09823.4 gi|289937607|ref|YP_003482209.1| - 0.051 12.6 0.0 0.086 11.9 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF2357) DZR PF12773.2 gi|289937607|ref|YP_003482209.1| - 0.16 11.8 3.9 0.39 10.5 2.7 1.7 1 0 0 1 1 1 0 Double zinc ribbon Ribosomal_S14 PF00253.16 gi|289937610|ref|YP_003482212.1| - 2.3e-13 49.3 0.2 2.8e-13 49.0 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein S14p/S29e cobW PF02492.14 gi|289937612|ref|YP_003482214.1| - 3.5e-46 156.8 1.4 6.8e-46 155.9 1.0 1.5 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain CobW_C PF07683.9 gi|289937612|ref|YP_003482214.1| - 2.6e-28 97.5 0.3 1.8e-27 94.9 0.2 2.2 1 1 0 1 1 1 1 Cobalamin synthesis protein cobW C-terminal domain GTP_EFTU PF00009.22 gi|289937612|ref|YP_003482214.1| - 0.00032 20.2 0.0 0.13 11.6 0.0 2.2 2 0 0 2 2 2 2 Elongation factor Tu GTP binding domain T2SE PF00437.15 gi|289937612|ref|YP_003482214.1| - 0.0015 17.4 0.2 0.003 16.5 0.2 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein TrwB_AAD_bind PF10412.4 gi|289937612|ref|YP_003482214.1| - 0.0038 15.9 0.0 0.0058 15.3 0.0 1.2 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain CbiA PF01656.18 gi|289937612|ref|YP_003482214.1| - 0.0042 16.5 0.1 0.01 15.2 0.1 1.8 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Zeta_toxin PF06414.7 gi|289937612|ref|YP_003482214.1| - 0.0063 15.6 0.1 0.044 12.8 0.0 2.1 2 0 0 2 2 2 1 Zeta toxin AAA_18 PF13238.1 gi|289937612|ref|YP_003482214.1| - 0.018 15.3 0.0 0.047 13.9 0.0 1.7 1 0 0 1 1 1 0 AAA domain UPF0079 PF02367.12 gi|289937612|ref|YP_003482214.1| - 0.019 14.5 0.1 0.048 13.2 0.0 1.6 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_10 PF12846.2 gi|289937612|ref|YP_003482214.1| - 0.056 12.8 0.0 0.097 12.0 0.0 1.4 1 0 0 1 1 1 0 AAA-like domain AAA_28 PF13521.1 gi|289937612|ref|YP_003482214.1| - 0.079 12.9 0.1 0.3 11.0 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.1 gi|289937612|ref|YP_003482214.1| - 0.088 12.9 0.1 0.34 11.0 0.0 2.0 3 0 0 3 3 3 0 AAA domain AAA_19 PF13245.1 gi|289937612|ref|YP_003482214.1| - 0.14 11.9 0.2 0.3 10.8 0.1 1.5 1 0 0 1 1 1 0 Part of AAA domain NAD_binding_9 PF13454.1 gi|289937613|ref|YP_003482215.1| - 2.1e-16 60.0 0.0 5.6e-11 42.4 0.0 3.1 3 0 0 3 3 3 2 FAD-NAD(P)-binding Pyr_redox_3 PF13738.1 gi|289937613|ref|YP_003482215.1| - 1.8e-11 44.4 0.0 7.1e-10 39.2 0.0 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|289937613|ref|YP_003482215.1| - 1.5e-06 27.3 1.0 0.072 11.9 0.0 4.1 2 2 1 4 4 4 2 FAD dependent oxidoreductase K_oxygenase PF13434.1 gi|289937613|ref|YP_003482215.1| - 9.4e-06 24.7 0.0 9.1e-05 21.5 0.0 2.3 1 1 1 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) Pyr_redox PF00070.22 gi|289937613|ref|YP_003482215.1| - 3.8e-05 23.9 0.0 0.18 12.2 0.0 2.6 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|289937613|ref|YP_003482215.1| - 0.0001 22.2 0.2 0.35 10.9 0.0 2.8 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain Lycopene_cycl PF05834.7 gi|289937613|ref|YP_003482215.1| - 0.00057 18.9 0.4 1.1 8.0 0.0 3.2 3 1 0 3 3 3 2 Lycopene cyclase protein Pyr_redox_2 PF07992.9 gi|289937613|ref|YP_003482215.1| - 0.0069 16.2 0.0 1 9.1 0.0 2.8 2 1 1 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase TrkA_N PF02254.13 gi|289937613|ref|YP_003482215.1| - 0.01 15.8 0.0 0.64 10.0 0.0 2.3 2 0 0 2 2 2 0 TrkA-N domain NAD_binding_9 PF13454.1 gi|289937614|ref|YP_003482216.1| - 4.7e-13 49.2 0.1 3.2e-10 39.9 0.0 3.2 3 0 0 3 3 3 1 FAD-NAD(P)-binding K_oxygenase PF13434.1 gi|289937614|ref|YP_003482216.1| - 2.9e-11 42.8 0.0 2.7e-10 39.7 0.0 2.0 2 0 0 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) Pyr_redox_3 PF13738.1 gi|289937614|ref|YP_003482216.1| - 1.2e-10 41.8 0.0 2.7e-10 40.6 0.0 1.6 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|289937614|ref|YP_003482216.1| - 2.5e-08 33.2 7.4 0.00023 20.1 0.1 4.2 3 2 1 4 4 4 3 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|289937614|ref|YP_003482216.1| - 1e-05 25.5 0.0 0.0036 17.1 0.0 2.9 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|289937614|ref|YP_003482216.1| - 7e-05 23.1 1.5 0.03 14.7 0.0 3.3 4 0 0 4 4 4 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|289937614|ref|YP_003482216.1| - 0.00038 20.4 0.2 0.073 13.1 0.0 2.7 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain 3HCDH_N PF02737.13 gi|289937614|ref|YP_003482216.1| - 0.0016 18.0 0.3 0.022 14.4 0.0 2.2 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.11 gi|289937614|ref|YP_003482216.1| - 0.0053 16.2 0.1 0.025 14.0 0.0 2.0 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA F420_oxidored PF03807.12 gi|289937614|ref|YP_003482216.1| - 0.011 16.1 0.0 0.25 11.8 0.0 2.4 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent TrkA_N PF02254.13 gi|289937614|ref|YP_003482216.1| - 0.016 15.1 0.1 0.49 10.4 0.0 2.8 3 0 0 3 3 3 0 TrkA-N domain NAD_Gly3P_dh_N PF01210.18 gi|289937614|ref|YP_003482216.1| - 0.031 14.0 0.1 0.21 11.3 0.0 2.1 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_7 PF13241.1 gi|289937614|ref|YP_003482216.1| - 0.05 13.8 0.0 2.3 8.4 0.0 2.4 2 0 0 2 2 2 0 Putative NAD(P)-binding FAD_binding_3 PF01494.14 gi|289937614|ref|YP_003482216.1| - 0.12 11.3 1.3 4.3 6.3 0.1 2.5 3 0 0 3 3 3 0 FAD binding domain AAA_16 PF13191.1 gi|289937615|ref|YP_003482217.1| - 0.00023 21.1 0.1 0.00045 20.2 0.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_17 PF13207.1 gi|289937615|ref|YP_003482217.1| - 0.00069 20.4 0.2 0.0022 18.8 0.2 2.1 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|289937615|ref|YP_003482217.1| - 0.00071 19.5 2.4 0.0041 17.0 1.2 2.4 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|289937615|ref|YP_003482217.1| - 0.0038 17.3 0.0 0.0069 16.5 0.0 1.5 1 1 0 1 1 1 1 AAA domain CbiA PF01656.18 gi|289937615|ref|YP_003482217.1| - 0.004 16.5 0.4 1.3 8.3 0.1 2.2 2 0 0 2 2 2 2 CobQ/CobB/MinD/ParA nucleotide binding domain MobB PF03205.9 gi|289937615|ref|YP_003482217.1| - 0.0072 16.0 0.1 0.014 15.0 0.0 1.5 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_18 PF13238.1 gi|289937615|ref|YP_003482217.1| - 0.0098 16.2 0.0 0.035 14.4 0.0 1.9 2 0 0 2 2 2 1 AAA domain ArsA_ATPase PF02374.10 gi|289937615|ref|YP_003482217.1| - 0.015 14.3 0.1 0.021 13.8 0.0 1.2 1 0 0 1 1 1 0 Anion-transporting ATPase NTPase_1 PF03266.10 gi|289937615|ref|YP_003482217.1| - 0.017 14.8 0.1 0.032 13.9 0.1 1.4 1 0 0 1 1 1 0 NTPase AAA PF00004.24 gi|289937615|ref|YP_003482217.1| - 0.02 15.1 0.0 0.028 14.6 0.0 1.4 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) TrwB_AAD_bind PF10412.4 gi|289937615|ref|YP_003482217.1| - 0.022 13.3 0.0 0.029 12.9 0.0 1.1 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain SRP54 PF00448.17 gi|289937615|ref|YP_003482217.1| - 0.032 13.6 0.0 0.059 12.8 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain RuvB_N PF05496.7 gi|289937615|ref|YP_003482217.1| - 0.033 13.2 0.0 0.079 11.9 0.0 1.6 2 0 0 2 2 2 0 Holliday junction DNA helicase ruvB N-terminus AAA_30 PF13604.1 gi|289937615|ref|YP_003482217.1| - 0.036 13.6 0.1 0.053 13.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain DBI_PRT PF02277.12 gi|289937615|ref|YP_003482217.1| - 0.072 12.1 0.1 0.14 11.2 0.1 1.4 1 0 0 1 1 1 0 Phosphoribosyltransferase Miro PF08477.8 gi|289937615|ref|YP_003482217.1| - 0.08 13.4 0.0 0.17 12.3 0.0 1.6 2 0 0 2 2 1 0 Miro-like protein AAA_5 PF07728.9 gi|289937615|ref|YP_003482217.1| - 0.11 12.2 0.0 0.19 11.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) NACHT PF05729.7 gi|289937615|ref|YP_003482217.1| - 0.11 12.1 0.0 0.36 10.4 0.0 1.8 2 0 0 2 2 2 0 NACHT domain ABC_tran PF00005.22 gi|289937615|ref|YP_003482217.1| - 0.11 12.7 0.0 0.2 11.9 0.0 1.4 1 1 0 1 1 1 0 ABC transporter DUF927 PF06048.6 gi|289937615|ref|YP_003482217.1| - 0.12 11.6 0.0 0.17 11.1 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF927) Alpha-amylase_C PF02806.13 gi|289937615|ref|YP_003482217.1| - 0.14 12.2 0.0 0.28 11.3 0.0 1.4 1 0 0 1 1 1 0 Alpha amylase, C-terminal all-beta domain ABC_membrane PF00664.18 gi|289937616|ref|YP_003482218.1| - 1.7e-35 122.7 5.5 2.3e-35 122.3 3.8 1.1 1 0 0 1 1 1 1 ABC transporter transmembrane region ABC_tran PF00005.22 gi|289937616|ref|YP_003482218.1| - 4e-29 101.6 0.0 2.8e-28 98.9 0.0 2.2 1 1 0 1 1 1 1 ABC transporter SMC_N PF02463.14 gi|289937616|ref|YP_003482218.1| - 1.1e-05 24.7 0.0 7.2e-05 22.1 0.0 2.0 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_17 PF13207.1 gi|289937616|ref|YP_003482218.1| - 0.0013 19.5 0.1 0.0044 17.8 0.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|289937616|ref|YP_003482218.1| - 0.0063 16.0 0.2 0.014 14.8 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|289937616|ref|YP_003482218.1| - 0.012 15.6 0.1 0.95 9.4 0.0 2.4 2 0 0 2 2 2 0 AAA ATPase domain DUF3584 PF12128.3 gi|289937616|ref|YP_003482218.1| - 0.012 12.9 0.0 0.022 12.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) AAA_33 PF13671.1 gi|289937616|ref|YP_003482218.1| - 0.058 13.2 0.0 0.27 11.1 0.0 2.0 2 0 0 2 2 2 0 AAA domain DUF258 PF03193.11 gi|289937616|ref|YP_003482218.1| - 0.089 11.9 0.0 0.16 11.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_18 PF13238.1 gi|289937616|ref|YP_003482218.1| - 0.12 12.7 0.0 0.35 11.1 0.0 1.9 1 0 0 1 1 1 0 AAA domain AAA_21 PF13304.1 gi|289937616|ref|YP_003482218.1| - 0.14 12.1 0.0 9.2 6.1 0.0 2.5 2 0 0 2 2 2 0 AAA domain FAD_binding_4 PF01565.18 gi|289937617|ref|YP_003482219.1| - 8.7e-35 119.2 2.8 1.4e-34 118.5 1.9 1.3 1 0 0 1 1 1 1 FAD binding domain BBE PF08031.7 gi|289937617|ref|YP_003482219.1| - 2.8e-09 36.7 0.1 5.6e-09 35.7 0.1 1.5 1 0 0 1 1 1 1 Berberine and berberine like Cytokin-bind PF09265.5 gi|289937617|ref|YP_003482219.1| - 0.00038 19.6 0.0 0.00056 19.1 0.0 1.2 1 0 0 1 1 1 1 Cytokinin dehydrogenase 1, FAD and cytokinin binding Beta-lactamase PF00144.19 gi|289937618|ref|YP_003482220.1| - 2.1e-49 168.3 0.0 2.7e-49 167.9 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase Peptidase_S11 PF00768.15 gi|289937618|ref|YP_003482220.1| - 0.049 12.9 0.0 0.079 12.2 0.0 1.2 1 0 0 1 1 1 0 D-alanyl-D-alanine carboxypeptidase DUF2721 PF11026.3 gi|289937620|ref|YP_003482222.1| - 0.039 13.5 1.9 0.048 13.3 1.3 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2721) DUF1109 PF06532.6 gi|289937620|ref|YP_003482222.1| - 0.047 13.1 0.8 0.051 12.9 0.5 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1109) DUF360 PF04020.8 gi|289937620|ref|YP_003482222.1| - 0.047 14.0 3.8 0.06 13.7 2.7 1.1 1 0 0 1 1 1 0 Membrane protein of unknown function DUF2207 PF09972.4 gi|289937620|ref|YP_003482222.1| - 0.3 9.6 1.4 0.32 9.5 1.0 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) FlgD_ig PF13860.1 gi|289937621|ref|YP_003482223.1| - 0.014 15.1 0.0 0.021 14.5 0.0 1.3 1 0 0 1 1 1 0 FlgD Ig-like domain Trp_oprn_chp PF09534.5 gi|289937622|ref|YP_003482224.1| - 0.037 13.6 7.0 0.058 13.0 4.8 1.3 1 0 0 1 1 1 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) HTH_20 PF12840.2 gi|289937623|ref|YP_003482225.1| - 0.03 14.1 0.6 0.054 13.2 0.4 1.5 1 1 0 1 1 1 0 Helix-turn-helix domain Usp PF00582.21 gi|289937624|ref|YP_003482226.1| - 2.1e-06 27.9 0.1 2.3e-06 27.8 0.1 1.1 1 0 0 1 1 1 1 Universal stress protein family DUF457 PF04307.9 gi|289937625|ref|YP_003482227.1| - 8.5e-07 28.4 14.8 1.2e-06 27.9 9.8 1.6 1 1 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) DUF4203 PF13886.1 gi|289937625|ref|YP_003482227.1| - 0.54 9.6 9.4 0.039 13.4 1.4 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4203) DUF2238 PF09997.4 gi|289937626|ref|YP_003482228.1| - 0.41 10.0 15.6 0.55 9.6 2.3 3.8 3 1 0 3 3 3 0 Predicted membrane protein (DUF2238) Glyco_tranf_2_3 PF13641.1 gi|289937627|ref|YP_003482229.1| - 0.00019 21.2 0.0 0.0003 20.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.1 gi|289937627|ref|YP_003482229.1| - 0.0017 17.6 0.1 0.033 13.4 0.0 2.5 1 1 2 3 3 3 1 Glycosyl transferase family 21 Glycos_transf_2 PF00535.21 gi|289937627|ref|YP_003482229.1| - 0.0037 16.9 0.0 0.0075 15.9 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase family 2 RHH_1 PF01402.16 gi|289937629|ref|YP_003482231.1| - 5.1e-06 26.1 0.7 0.0028 17.4 0.0 3.1 3 1 0 3 3 3 2 Ribbon-helix-helix protein, copG family cwf21 PF08312.7 gi|289937629|ref|YP_003482231.1| - 0.023 14.5 2.1 0.35 10.7 1.4 2.5 1 1 0 1 1 1 0 cwf21 domain HhH-GPD PF00730.20 gi|289937629|ref|YP_003482231.1| - 0.045 14.0 0.0 0.059 13.6 0.0 1.3 1 0 0 1 1 1 0 HhH-GPD superfamily base excision DNA repair protein MutS_IV PF05190.13 gi|289937629|ref|YP_003482231.1| - 0.064 13.4 1.1 1.2 9.3 0.1 2.1 2 0 0 2 2 2 0 MutS family domain IV Trans_reg_C PF00486.23 gi|289937629|ref|YP_003482231.1| - 0.13 12.1 0.2 0.23 11.4 0.1 1.4 1 0 0 1 1 1 0 Transcriptional regulatory protein, C terminal FUSC PF04632.7 gi|289937629|ref|YP_003482231.1| - 0.19 10.0 3.0 0.23 9.8 2.1 1.0 1 0 0 1 1 1 0 Fusaric acid resistance protein family PIN PF01850.16 gi|289937630|ref|YP_003482232.1| - 0.00038 20.7 0.4 0.00082 19.6 0.3 1.5 1 1 0 1 1 1 1 PIN domain PIN_3 PF13470.1 gi|289937630|ref|YP_003482232.1| - 0.01 16.5 0.3 0.015 15.9 0.2 1.3 1 1 0 1 1 1 0 PIN domain HTH_Tnp_1_2 PF13022.1 gi|289937630|ref|YP_003482232.1| - 0.015 15.0 0.0 0.025 14.3 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix of insertion element transposase DUF4363 PF14276.1 gi|289937632|ref|YP_003482234.1| - 0.024 14.3 0.0 0.024 14.3 0.0 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4363) GvpK PF05121.7 gi|289937632|ref|YP_003482234.1| - 0.028 14.2 0.1 0.03 14.1 0.0 1.0 1 0 0 1 1 1 0 Gas vesicle protein K DUF2098 PF09871.4 gi|289937633|ref|YP_003482235.1| - 0.11 12.4 0.1 0.18 11.7 0.1 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2098) SprT-like PF10263.4 gi|289937634|ref|YP_003482236.1| - 0.08 12.6 0.0 0.08 12.6 0.0 1.2 1 0 0 1 1 1 0 SprT-like family HATPase_c_3 PF13589.1 gi|289937635|ref|YP_003482237.1| - 2.7e-11 43.2 0.0 4.8e-11 42.4 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Staph_haemo PF05480.6 gi|289937635|ref|YP_003482237.1| - 0.049 13.3 0.0 0.14 11.8 0.0 1.8 1 0 0 1 1 1 0 Staphylococcus haemolytic protein TAT_signal PF10518.4 gi|289937636|ref|YP_003482238.1| - 0.021 14.8 2.8 0.034 14.1 1.9 1.3 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence DDE_3 PF13358.1 gi|289937638|ref|YP_003482240.1| - 1.2e-29 102.9 0.0 3.9e-29 101.2 0.0 1.8 2 0 0 2 2 2 1 DDE superfamily endonuclease HTH_33 PF13592.1 gi|289937638|ref|YP_003482240.1| - 7.9e-23 79.7 1.0 2.4e-21 75.0 0.0 3.0 3 0 0 3 3 3 1 Winged helix-turn helix HTH_29 PF13551.1 gi|289937638|ref|YP_003482240.1| - 2.3e-19 69.5 0.3 6e-19 68.2 0.2 1.7 1 0 0 1 1 1 1 Winged helix-turn helix HTH_28 PF13518.1 gi|289937638|ref|YP_003482240.1| - 4.9e-12 45.6 0.7 2e-11 43.6 0.3 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_32 PF13565.1 gi|289937638|ref|YP_003482240.1| - 5.4e-11 43.1 3.5 1.3e-10 41.8 0.1 2.9 3 0 0 3 3 3 1 Homeodomain-like domain HTH_23 PF13384.1 gi|289937638|ref|YP_003482240.1| - 2.2e-05 23.9 0.1 5.1e-05 22.7 0.1 1.6 1 0 0 1 1 1 1 Homeodomain-like domain rve PF00665.21 gi|289937638|ref|YP_003482240.1| - 0.00048 20.2 0.0 0.00098 19.2 0.0 1.6 1 0 0 1 1 1 1 Integrase core domain HTH_Tnp_IS630 PF01710.11 gi|289937638|ref|YP_003482240.1| - 0.0019 17.8 0.1 0.0042 16.7 0.1 1.5 1 0 0 1 1 1 1 Transposase DUF2605 PF10792.4 gi|289937638|ref|YP_003482240.1| - 0.0032 17.1 0.9 5.6 6.6 0.0 3.3 3 0 0 3 3 3 2 Protein of unknown function (DUF2605) HTH_38 PF13936.1 gi|289937638|ref|YP_003482240.1| - 0.0089 15.5 0.2 0.023 14.2 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain DDE_Tnp_ISAZ013 PF07592.6 gi|289937638|ref|YP_003482240.1| - 0.025 13.3 0.0 0.23 10.1 0.0 2.2 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain HTH_11 PF08279.7 gi|289937638|ref|YP_003482240.1| - 0.13 11.9 0.5 3.3 7.4 0.0 2.3 2 0 0 2 2 2 0 HTH domain HTH_10 PF04967.7 gi|289937639|ref|YP_003482241.1| - 3.6e-16 58.4 0.0 5.4e-16 57.9 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4_2 PF08281.7 gi|289937639|ref|YP_003482241.1| - 1.4e-05 24.4 0.3 0.00016 21.0 0.0 2.2 2 0 0 2 2 2 1 Sigma-70, region 4 GerE PF00196.14 gi|289937639|ref|YP_003482241.1| - 0.00017 20.8 0.1 0.00055 19.2 0.1 1.8 1 1 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_38 PF13936.1 gi|289937639|ref|YP_003482241.1| - 0.0021 17.6 0.0 0.0037 16.7 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4 PF04545.11 gi|289937639|ref|YP_003482241.1| - 0.0079 15.4 0.0 0.014 14.6 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_24 PF13412.1 gi|289937639|ref|YP_003482241.1| - 0.01 15.2 0.0 0.017 14.5 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding LexA_DNA_bind PF01726.11 gi|289937639|ref|YP_003482241.1| - 0.052 13.1 0.0 0.12 11.9 0.0 1.6 1 1 0 1 1 1 0 LexA DNA binding domain CAAD PF14159.1 gi|289937639|ref|YP_003482241.1| - 0.079 12.6 0.0 0.13 11.8 0.0 1.3 1 0 0 1 1 1 0 CAAD domains of cyanobacterial aminoacyl-tRNA synthetase HTH_23 PF13384.1 gi|289937639|ref|YP_003482241.1| - 0.09 12.4 0.0 0.22 11.2 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain MarR_2 PF12802.2 gi|289937639|ref|YP_003482241.1| - 0.13 11.9 0.0 0.36 10.5 0.0 1.6 2 0 0 2 2 2 0 MarR family Rota_NSP4 PF01452.11 gi|289937639|ref|YP_003482241.1| - 0.14 11.4 0.0 0.21 10.9 0.0 1.2 1 0 0 1 1 1 0 Rotavirus non structural protein HTH_40 PF14493.1 gi|289937639|ref|YP_003482241.1| - 0.15 12.3 0.0 0.32 11.2 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Acetyltransf_1 PF00583.19 gi|289937640|ref|YP_003482242.1| - 4.3e-10 39.4 0.1 6.6e-10 38.8 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|289937640|ref|YP_003482242.1| - 3.1e-07 30.4 0.0 5.3e-07 29.7 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|289937640|ref|YP_003482242.1| - 4.5e-07 29.9 0.0 5.1e-07 29.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|289937640|ref|YP_003482242.1| - 2.7e-05 24.1 0.0 3.4e-05 23.8 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|289937640|ref|YP_003482242.1| - 0.0011 19.1 0.0 0.0014 18.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|289937640|ref|YP_003482242.1| - 0.0013 18.5 0.0 0.0025 17.6 0.0 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|289937640|ref|YP_003482242.1| - 0.013 15.2 0.0 0.022 14.5 0.0 1.3 1 0 0 1 1 1 0 FR47-like protein Abi PF02517.11 gi|289937642|ref|YP_003482244.1| - 2.1e-15 56.5 5.5 2.1e-15 56.5 3.8 3.0 3 1 0 3 3 3 1 CAAX protease self-immunity DUF3094 PF11293.3 gi|289937642|ref|YP_003482244.1| - 7.2 6.1 6.1 1.4 8.4 1.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3094) Rhomboid PF01694.17 gi|289937643|ref|YP_003482245.1| - 4.5e-14 52.6 11.6 4.5e-14 52.6 8.1 1.6 2 0 0 2 2 2 1 Rhomboid family DDE_Tnp_1 PF01609.16 gi|289937644|ref|YP_003482246.1| - 8.8e-16 58.0 2.9 1.5e-15 57.3 2.0 1.3 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_2 PF13586.1 gi|289937644|ref|YP_003482246.1| - 0.00063 19.8 0.3 0.0014 18.7 0.2 1.6 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.1 gi|289937644|ref|YP_003482246.1| - 0.005 16.5 0.0 0.0084 15.8 0.0 1.4 1 0 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.6 gi|289937644|ref|YP_003482246.1| - 0.074 12.9 0.3 0.28 11.0 0.0 2.1 2 0 0 2 2 2 0 Transposase domain (DUF772) Imm27 PF15573.1 gi|289937645|ref|YP_003482247.1| - 0.041 13.0 0.0 0.053 12.7 0.0 1.1 1 0 0 1 1 1 0 Immunity protein 27 DUF2250 PF10007.4 gi|289937646|ref|YP_003482248.1| - 0.00046 20.0 0.0 0.00077 19.3 0.0 1.3 1 1 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) MarR_2 PF12802.2 gi|289937646|ref|YP_003482248.1| - 0.00048 19.7 0.0 0.00053 19.6 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|289937646|ref|YP_003482248.1| - 0.014 15.7 0.0 0.019 15.2 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_AsnC-type PF13404.1 gi|289937646|ref|YP_003482248.1| - 0.031 13.8 0.0 0.041 13.4 0.0 1.2 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain DUF2161 PF09929.4 gi|289937646|ref|YP_003482248.1| - 0.062 13.2 0.0 0.087 12.7 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2161) Mrr_N PF14338.1 gi|289937646|ref|YP_003482248.1| - 0.062 13.3 0.0 0.082 13.0 0.0 1.2 1 0 0 1 1 1 0 Mrr N-terminal domain zf-HC2 PF13490.1 gi|289937646|ref|YP_003482248.1| - 0.31 11.0 2.4 2.8 7.9 0.5 2.3 2 0 0 2 2 2 0 Putative zinc-finger DUF4131 PF13567.1 gi|289937647|ref|YP_003482249.1| - 0.0014 18.0 0.1 0.028 13.8 0.0 2.6 3 1 0 3 3 3 1 Domain of unknown function (DUF4131) DUF1405 PF07187.6 gi|289937647|ref|YP_003482249.1| - 0.084 12.5 0.1 0.14 11.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1405) DUF4307 PF14155.1 gi|289937647|ref|YP_003482249.1| - 0.17 11.6 2.3 0.61 9.8 0.1 2.8 3 0 0 3 3 3 0 Domain of unknown function (DUF4307) Peptidase_S24 PF00717.18 gi|289937648|ref|YP_003482250.1| - 9.4e-09 34.8 0.2 2e-08 33.7 0.1 1.5 1 0 0 1 1 1 1 Peptidase S24-like AHS1 PF02682.11 gi|289937648|ref|YP_003482250.1| - 0.049 13.0 0.0 0.086 12.2 0.0 1.3 1 0 0 1 1 1 0 Allophanate hydrolase subunit 1 NosL PF05573.7 gi|289937649|ref|YP_003482251.1| - 4e-07 29.8 0.0 8.4e-07 28.7 0.0 1.5 1 0 0 1 1 1 1 NosL TAT_signal PF10518.4 gi|289937649|ref|YP_003482251.1| - 1.1 9.4 6.3 2.1 8.5 4.3 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Nop14 PF04147.7 gi|289937649|ref|YP_003482251.1| - 4.1 5.2 16.5 5.4 4.7 11.4 1.1 1 0 0 1 1 1 0 Nop14-like family DUF3642 PF12182.3 gi|289937650|ref|YP_003482252.1| - 0.66 10.4 3.1 21 5.6 0.5 2.5 1 1 1 2 2 2 0 Bacterial lipoprotein TFIIB PF00382.14 gi|289937651|ref|YP_003482253.1| - 3.1e-47 158.2 1.8 4.2e-26 90.5 0.1 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|289937651|ref|YP_003482253.1| - 6.7e-14 50.9 0.9 1.3e-13 49.9 0.6 1.5 1 0 0 1 1 1 1 TFIIB zinc-binding HTH_23 PF13384.1 gi|289937651|ref|YP_003482253.1| - 0.0068 16.0 0.4 0.33 10.6 0.1 3.1 2 0 0 2 2 2 1 Homeodomain-like domain Sigma70_r4 PF04545.11 gi|289937651|ref|YP_003482253.1| - 0.039 13.2 0.3 0.75 9.1 0.0 2.9 2 1 0 2 2 2 0 Sigma-70, region 4 Cyclin_N PF00134.18 gi|289937651|ref|YP_003482253.1| - 0.095 12.2 0.0 0.58 9.7 0.0 2.0 2 0 0 2 2 2 0 Cyclin, N-terminal domain Ribosomal_S27e PF01667.12 gi|289937651|ref|YP_003482253.1| - 0.12 11.8 0.2 0.23 11.0 0.1 1.4 1 0 0 1 1 1 0 Ribosomal protein S27 Zn-ribbon_8 PF09723.5 gi|289937651|ref|YP_003482253.1| - 1.5 8.8 5.2 2.6 8.0 0.5 2.4 1 1 1 2 2 2 0 Zinc ribbon domain Tweety PF04906.8 gi|289937653|ref|YP_003482255.1| - 0.2 10.0 0.6 0.23 9.8 0.4 1.1 1 0 0 1 1 1 0 Tweety DUF2975 PF11188.3 gi|289937653|ref|YP_003482255.1| - 0.33 10.6 3.5 0.37 10.5 2.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2975) tRNA_anti-codon PF01336.20 gi|289937654|ref|YP_003482256.1| - 8.2e-05 22.3 0.0 0.00019 21.2 0.0 1.6 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain DUF3456 PF11938.3 gi|289937654|ref|YP_003482256.1| - 0.041 13.8 0.2 0.2 11.6 0.0 2.2 2 0 0 2 2 2 0 TLR4 regulator and MIR-interacting MSAP T2SS-T3SS_pil_N PF13629.1 gi|289937654|ref|YP_003482256.1| - 0.063 12.8 0.0 0.14 11.6 0.0 1.5 1 0 0 1 1 1 0 Pilus formation protein N terminal region Peptidase_S9 PF00326.16 gi|289937655|ref|YP_003482257.1| - 1.3e-49 168.3 0.1 2.6e-49 167.3 0.0 1.5 2 0 0 2 2 2 1 Prolyl oligopeptidase family Abhydrolase_5 PF12695.2 gi|289937655|ref|YP_003482257.1| - 9.1e-15 54.6 2.7 1.5e-14 53.9 0.6 2.3 2 1 0 2 2 2 1 Alpha/beta hydrolase family DLH PF01738.13 gi|289937655|ref|YP_003482257.1| - 1.1e-12 47.7 0.1 6.5e-12 45.2 0.1 2.1 1 1 0 1 1 1 1 Dienelactone hydrolase family Abhydrolase_6 PF12697.2 gi|289937655|ref|YP_003482257.1| - 2.8e-09 37.1 9.2 1.6e-08 34.7 6.4 2.2 1 1 0 1 1 1 1 Alpha/beta hydrolase family Peptidase_S15 PF02129.13 gi|289937655|ref|YP_003482257.1| - 1.1e-07 31.5 0.1 0.012 15.1 0.0 2.2 1 1 1 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) PD40 PF07676.7 gi|289937655|ref|YP_003482257.1| - 5.9e-07 29.0 1.3 0.0096 15.5 0.2 3.3 2 0 0 2 2 2 2 WD40-like Beta Propeller Repeat Abhydrolase_4 PF08386.5 gi|289937655|ref|YP_003482257.1| - 2.3e-06 27.4 0.0 7.1e-06 25.8 0.0 1.8 1 0 0 1 1 1 1 TAP-like protein Abhydrolase_1 PF00561.15 gi|289937655|ref|YP_003482257.1| - 1.9e-05 24.3 0.1 0.00061 19.4 0.0 2.2 1 1 1 2 2 2 1 alpha/beta hydrolase fold Abhydrolase_3 PF07859.8 gi|289937655|ref|YP_003482257.1| - 2.6e-05 23.8 2.5 0.00018 21.1 1.8 2.3 1 1 0 1 1 1 1 alpha/beta hydrolase fold AXE1 PF05448.7 gi|289937655|ref|YP_003482257.1| - 0.00075 18.0 0.1 0.0092 14.5 0.1 2.4 1 1 0 1 1 1 1 Acetyl xylan esterase (AXE1) Abhydrolase_2 PF02230.11 gi|289937655|ref|YP_003482257.1| - 0.0079 15.6 0.0 2.1 7.7 0.0 2.9 3 0 0 3 3 3 1 Phospholipase/Carboxylesterase DUF218 PF02698.12 gi|289937655|ref|YP_003482257.1| - 0.038 13.4 0.1 0.41 10.1 0.0 2.3 2 0 0 2 2 2 0 DUF218 domain PhoPQ_related PF10142.4 gi|289937655|ref|YP_003482257.1| - 0.13 10.7 0.0 0.19 10.1 0.0 1.2 1 0 0 1 1 1 0 PhoPQ-activated pathogenicity-related protein FSH1 PF03959.8 gi|289937655|ref|YP_003482257.1| - 0.19 11.1 0.0 0.31 10.4 0.0 1.2 1 0 0 1 1 1 0 Serine hydrolase (FSH1) BAAT_C PF08840.6 gi|289937655|ref|YP_003482257.1| - 0.2 11.3 0.0 0.68 9.5 0.0 1.8 1 1 0 1 1 1 0 BAAT / Acyl-CoA thioester hydrolase C terminal DUF829 PF05705.9 gi|289937655|ref|YP_003482257.1| - 0.22 11.1 0.0 0.34 10.5 0.0 1.2 1 0 0 1 1 1 0 Eukaryotic protein of unknown function (DUF829) Lactamase_B_2 PF12706.2 gi|289937656|ref|YP_003482258.1| - 2.2e-09 37.1 0.1 3.9e-09 36.3 0.1 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|289937656|ref|YP_003482258.1| - 5.5e-08 32.6 2.2 1.6e-07 31.1 1.5 1.8 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Fic PF02661.13 gi|289937658|ref|YP_003482260.1| - 5.5e-21 75.0 0.0 2.7e-20 72.8 0.0 2.0 2 0 0 2 2 2 1 Fic/DOC family Fic_N PF13784.1 gi|289937658|ref|YP_003482260.1| - 2.7e-12 46.3 0.1 4.3e-12 45.7 0.1 1.3 1 0 0 1 1 1 1 Fic/DOC family N-terminal TrmB PF01978.14 gi|289937658|ref|YP_003482260.1| - 4.6e-06 26.2 0.1 9.7e-06 25.2 0.1 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.7 gi|289937658|ref|YP_003482260.1| - 2.2e-05 23.9 0.0 6.7e-05 22.4 0.0 1.8 1 0 0 1 1 1 1 HTH domain MarR_2 PF12802.2 gi|289937658|ref|YP_003482260.1| - 0.0077 15.8 0.0 0.014 15.0 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|289937658|ref|YP_003482260.1| - 0.022 15.1 0.1 0.19 12.0 0.0 2.2 2 0 0 2 2 2 0 Winged helix DNA-binding domain TctB PF07331.6 gi|289937659|ref|YP_003482261.1| - 0.33 10.5 11.5 0.78 9.3 8.0 1.6 1 1 0 1 1 1 0 Tripartite tricarboxylate transporter TctB family DUF3325 PF11804.3 gi|289937659|ref|YP_003482261.1| - 0.8 9.6 6.9 1.1 9.1 4.8 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3325) ABC_cobalt PF09819.4 gi|289937659|ref|YP_003482261.1| - 1.4 8.8 7.8 2 8.3 5.3 1.3 1 1 0 1 1 1 0 ABC-type cobalt transport system, permease component DUF3006 PF11213.3 gi|289937661|ref|YP_003482263.1| - 1.7e-11 43.6 0.9 2e-11 43.4 0.6 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3006) DUF1890 PF09001.6 gi|289937661|ref|YP_003482263.1| - 0.052 13.5 0.0 0.11 12.5 0.0 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF1890) DUF3948 PF13134.1 gi|289937662|ref|YP_003482264.1| - 1.1 8.7 4.4 1.7 8.1 3.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3948) PQQ_2 PF13360.1 gi|289937663|ref|YP_003482265.1| - 1.4e-30 106.5 2.5 4e-16 59.2 0.0 3.1 1 1 2 3 3 3 3 PQQ-like domain PQQ_3 PF13570.1 gi|289937663|ref|YP_003482265.1| - 6.7e-22 77.0 16.8 2.3e-06 27.6 0.0 8.5 8 0 0 8 8 8 5 PQQ-like domain PQQ PF01011.16 gi|289937663|ref|YP_003482265.1| - 2.1e-14 52.2 7.9 0.026 14.0 0.1 6.7 8 0 0 8 8 8 4 PQQ enzyme repeat Glu_cyclase_2 PF05096.7 gi|289937663|ref|YP_003482265.1| - 0.068 12.1 0.2 1.5 7.7 0.0 2.1 2 0 0 2 2 2 0 Glutamine cyclotransferase PIN PF01850.16 gi|289937665|ref|YP_003482267.1| - 1.7e-10 41.2 2.1 1.9e-10 41.0 1.5 1.1 1 0 0 1 1 1 1 PIN domain Antitoxin-MazE PF04014.13 gi|289937666|ref|YP_003482268.1| - 3.3e-08 33.0 0.3 3.3e-08 33.0 0.2 1.6 2 0 0 2 2 2 1 Antidote-toxin recognition MazE Arch_ATPase PF01637.13 gi|289937667|ref|YP_003482269.1| - 3.3e-28 98.9 0.0 6.3e-28 98.0 0.0 1.5 1 1 0 1 1 1 1 Archaeal ATPase DUF234 PF03008.9 gi|289937667|ref|YP_003482269.1| - 2.3e-14 53.3 0.0 4.6e-14 52.3 0.0 1.5 1 0 0 1 1 1 1 Archaea bacterial proteins of unknown function AAA_14 PF13173.1 gi|289937667|ref|YP_003482269.1| - 5.7e-07 29.4 0.0 1.1e-06 28.6 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|289937667|ref|YP_003482269.1| - 2.8e-06 27.4 0.0 5.7e-06 26.5 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|289937667|ref|YP_003482269.1| - 6.5e-05 22.9 0.0 0.00014 21.9 0.0 1.6 1 0 0 1 1 1 1 AAA ATPase domain Mrr_cat PF04471.7 gi|289937667|ref|YP_003482269.1| - 0.052 13.3 0.0 0.093 12.5 0.0 1.4 1 0 0 1 1 1 0 Restriction endonuclease HTH_24 PF13412.1 gi|289937667|ref|YP_003482269.1| - 0.069 12.5 0.0 0.14 11.5 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding DDE_Tnp_IS1595 PF12762.2 gi|289937668|ref|YP_003482270.1| - 2e-22 79.6 0.0 2.9e-22 79.1 0.0 1.3 1 0 0 1 1 1 1 ISXO2-like transposase domain Zn_Tnp_IS1595 PF12760.2 gi|289937668|ref|YP_003482270.1| - 8.3e-10 38.3 0.5 1.5e-09 37.4 0.3 1.5 1 0 0 1 1 1 1 Transposase zinc-ribbon domain Zn_Tnp_IS1 PF03811.8 gi|289937668|ref|YP_003482270.1| - 0.00022 20.6 4.2 0.00022 20.6 1.9 1.7 2 0 0 2 2 2 1 InsA N-terminal domain zf-C4_Topoisom PF01396.14 gi|289937668|ref|YP_003482270.1| - 0.004 16.6 2.0 0.0074 15.7 1.4 1.4 1 0 0 1 1 1 1 Topoisomerase DNA binding C4 zinc finger zinc-ribbons_6 PF07191.7 gi|289937668|ref|YP_003482270.1| - 0.026 14.3 0.2 0.053 13.3 0.1 1.5 1 0 0 1 1 1 0 zinc-ribbons DUF2089 PF09862.4 gi|289937668|ref|YP_003482270.1| - 0.064 13.0 0.0 0.11 12.3 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2089) zf-Dof PF02701.10 gi|289937668|ref|YP_003482270.1| - 0.086 12.7 3.4 0.17 11.7 2.3 1.5 1 0 0 1 1 1 0 Dof domain, zinc finger Zn_ribbon_recom PF13408.1 gi|289937668|ref|YP_003482270.1| - 0.16 12.2 2.0 0.39 11.0 1.4 1.6 1 0 0 1 1 1 0 Recombinase zinc beta ribbon domain Zn-ribbon_8 PF09723.5 gi|289937668|ref|YP_003482270.1| - 0.28 11.1 1.2 18 5.3 0.0 2.4 2 0 0 2 2 2 0 Zinc ribbon domain zf-ISL3 PF14690.1 gi|289937668|ref|YP_003482270.1| - 0.37 10.8 5.8 4.8 7.3 0.1 2.7 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-C2H2_6 PF13912.1 gi|289937668|ref|YP_003482270.1| - 1.8 8.5 4.6 1.1 9.2 0.2 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger DUF1043 PF06295.7 gi|289937669|ref|YP_003482271.1| - 0.073 12.7 0.2 0.094 12.3 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1043) TerB-N PF13208.1 gi|289937669|ref|YP_003482271.1| - 0.36 10.2 4.0 0.69 9.3 2.7 1.5 1 1 0 1 1 1 0 TerB-N DUF3006 PF11213.3 gi|289937670|ref|YP_003482272.1| - 1.8e-13 50.0 1.1 2.1e-13 49.8 0.7 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3006) DUF217 PF02697.9 gi|289937671|ref|YP_003482273.1| - 2.9e-07 30.6 3.3 3.6e-07 30.3 2.3 1.1 1 0 0 1 1 1 1 Uncharacterized ACR, COG1753 YbjQ_1 PF01906.12 gi|289937671|ref|YP_003482273.1| - 0.15 12.5 0.2 0.18 12.2 0.2 1.2 1 0 0 1 1 1 0 Putative heavy-metal-binding DUF788 PF05620.6 gi|289937671|ref|YP_003482273.1| - 4.1 7.2 5.9 0.32 10.8 0.7 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF788) PIN PF01850.16 gi|289937672|ref|YP_003482274.1| - 3.1e-09 37.2 0.0 3.8e-09 36.8 0.0 1.1 1 0 0 1 1 1 1 PIN domain OrfB_Zn_ribbon PF07282.6 gi|289937673|ref|YP_003482275.1| - 8.5e-25 86.2 0.5 2e-24 85.0 0.4 1.7 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|289937673|ref|YP_003482275.1| - 3.9e-12 46.0 0.0 5.8e-12 45.4 0.0 1.2 1 0 0 1 1 1 1 Probable transposase DZR PF12773.2 gi|289937673|ref|YP_003482275.1| - 0.056 13.2 5.1 0.032 14.0 1.8 1.9 2 0 0 2 2 2 0 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|289937673|ref|YP_003482275.1| - 0.75 9.0 3.6 23 4.3 2.2 2.6 1 1 1 2 2 2 0 zinc-ribbon domain CARDB PF07705.6 gi|289937676|ref|YP_003482278.1| - 6.8e-12 45.3 20.8 1.3e-05 25.1 1.6 3.8 4 0 0 4 4 4 3 CARDB Transglut_C PF00927.17 gi|289937676|ref|YP_003482278.1| - 0.017 15.1 0.2 5.5 7.0 0.0 3.5 3 1 0 3 3 3 0 Transglutaminase family, C-terminal ig like domain DUF1034 PF06280.7 gi|289937676|ref|YP_003482278.1| - 0.051 13.9 15.9 2.6 8.4 0.0 4.0 2 2 1 3 3 3 0 Fn3-like domain (DUF1034) DUF499 PF04465.7 gi|289937676|ref|YP_003482278.1| - 0.059 10.9 1.1 1.4 6.3 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF499) Fn3-like PF14310.1 gi|289937676|ref|YP_003482278.1| - 0.078 12.9 9.5 0.95 9.4 0.1 5.0 3 2 1 5 5 5 0 Fibronectin type III-like domain Cupredoxin_1 PF13473.1 gi|289937676|ref|YP_003482278.1| - 0.1 12.5 9.4 1.4 8.8 0.4 3.0 2 2 2 4 4 4 0 Cupredoxin-like domain PKD PF00801.15 gi|289937676|ref|YP_003482278.1| - 3.1 7.6 12.3 1.7 8.4 0.7 4.4 3 2 0 3 3 3 0 PKD domain Peptidase_S8 PF00082.17 gi|289937677|ref|YP_003482279.1| - 3.7e-43 147.6 6.0 9.2e-43 146.3 4.1 1.7 1 0 0 1 1 1 1 Subtilase family CarboxypepD_reg PF13620.1 gi|289937677|ref|YP_003482279.1| - 1.6e-14 53.7 0.6 1.6e-14 53.7 0.4 3.8 3 0 0 3 3 3 1 Carboxypeptidase regulatory-like domain NosD PF05048.8 gi|289937677|ref|YP_003482279.1| - 2.9e-13 49.5 2.4 1.9e-09 37.0 0.2 2.6 1 1 1 2 2 2 2 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.1 gi|289937677|ref|YP_003482279.1| - 9.1e-11 41.7 12.2 9.1e-11 41.7 8.5 2.3 2 1 0 2 2 2 1 Right handed beta helix region DUF4480 PF13715.1 gi|289937677|ref|YP_003482279.1| - 6.2e-10 38.9 4.8 9.6e-10 38.3 0.2 3.6 4 0 0 4 4 4 1 Domain of unknown function (DUF4480) SlyX PF04102.7 gi|289937678|ref|YP_003482280.1| - 0.0013 19.0 5.9 0.0037 17.5 3.7 2.0 2 0 0 2 2 2 1 SlyX DUF1281 PF06924.6 gi|289937678|ref|YP_003482280.1| - 0.082 12.3 0.0 0.17 11.2 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1281) Atg14 PF10186.4 gi|289937678|ref|YP_003482280.1| - 0.2 10.5 1.0 0.35 9.7 0.7 1.3 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 DUF4047 PF13256.1 gi|289937678|ref|YP_003482280.1| - 0.22 11.4 1.6 0.43 10.5 1.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4047) DUF16 PF01519.11 gi|289937678|ref|YP_003482280.1| - 0.41 10.8 2.9 0.79 9.9 1.2 1.9 2 0 0 2 2 2 0 Protein of unknown function DUF16 DivIC PF04977.10 gi|289937678|ref|YP_003482280.1| - 0.44 10.0 6.0 1.7 8.1 0.0 2.8 2 1 1 3 3 3 0 Septum formation initiator bZIP_2 PF07716.10 gi|289937678|ref|YP_003482280.1| - 0.77 9.6 4.4 2.9 7.7 0.1 2.4 2 0 0 2 2 2 0 Basic region leucine zipper FlgN PF05130.7 gi|289937678|ref|YP_003482280.1| - 4.9 7.4 9.1 0.8 9.9 3.4 1.8 2 0 0 2 2 2 0 FlgN protein