# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- Cdc6_C PF09079.11 gi|289937460|ref|YP_003482062.1| - 8.1e-17 61.0 0.3 3.6e-16 58.9 0.0 2.3 3 0 0 3 3 2 1 CDC6, C terminal winged helix domain AAA_22 PF13401.6 gi|289937460|ref|YP_003482062.1| - 1.2e-11 45.0 0.1 6.8e-11 42.6 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|289937460|ref|YP_003482062.1| - 1.3e-09 38.7 3.4 5.2e-09 36.7 0.0 3.1 2 2 0 2 2 2 1 AAA ATPase domain NACHT PF05729.12 gi|289937460|ref|YP_003482062.1| - 1.3e-06 28.5 0.0 3.2e-06 27.2 0.0 1.6 2 0 0 2 2 2 1 NACHT domain AAA PF00004.29 gi|289937460|ref|YP_003482062.1| - 1.3e-06 28.9 0.0 2.7e-06 27.8 0.0 1.6 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) ATPase_2 PF01637.18 gi|289937460|ref|YP_003482062.1| - 7.4e-05 22.8 0.1 0.00056 19.9 0.0 2.2 1 1 0 2 2 2 1 ATPase domain predominantly from Archaea TniB PF05621.11 gi|289937460|ref|YP_003482062.1| - 0.00037 20.0 0.0 0.00067 19.1 0.0 1.3 1 0 0 1 1 1 1 Bacterial TniB protein NB-ARC PF00931.22 gi|289937460|ref|YP_003482062.1| - 0.00047 19.4 0.0 0.0013 18.0 0.0 1.8 2 1 0 2 2 2 1 NB-ARC domain AAA_32 PF13654.6 gi|289937460|ref|YP_003482062.1| - 0.0011 17.9 0.1 0.22 10.3 0.0 2.2 2 0 0 2 2 2 2 AAA domain RNA_helicase PF00910.22 gi|289937460|ref|YP_003482062.1| - 0.0014 19.0 0.0 0.0034 17.7 0.0 1.7 1 0 0 1 1 1 1 RNA helicase DUF815 PF05673.13 gi|289937460|ref|YP_003482062.1| - 0.0015 17.8 0.0 0.0027 16.9 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_7 PF12775.7 gi|289937460|ref|YP_003482062.1| - 0.0065 16.0 0.0 0.011 15.3 0.0 1.3 1 0 0 1 1 1 1 P-loop containing dynein motor region AAA_18 PF13238.6 gi|289937460|ref|YP_003482062.1| - 0.015 15.9 0.0 0.067 13.7 0.0 2.2 2 0 0 2 2 2 0 AAA domain TsaE PF02367.17 gi|289937460|ref|YP_003482062.1| - 0.034 14.2 0.0 0.063 13.3 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE DEAD PF00270.29 gi|289937460|ref|YP_003482062.1| - 0.037 13.8 0.2 1.3 8.7 0.2 2.4 1 1 0 1 1 1 0 DEAD/DEAH box helicase AAA_25 PF13481.6 gi|289937460|ref|YP_003482062.1| - 0.046 13.3 0.0 0.12 12.0 0.0 1.7 1 0 0 1 1 1 0 AAA domain Microtub_bd PF16796.5 gi|289937460|ref|YP_003482062.1| - 0.047 13.6 0.0 0.086 12.8 0.0 1.4 1 0 0 1 1 1 0 Microtubule binding AAA_5 PF07728.14 gi|289937460|ref|YP_003482062.1| - 0.05 13.6 0.0 0.14 12.2 0.0 1.9 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_14 PF13173.6 gi|289937460|ref|YP_003482062.1| - 0.057 13.5 0.0 0.13 12.3 0.0 1.7 1 0 0 1 1 1 0 AAA domain PBP_like_2 PF12849.7 gi|289937461|ref|YP_003482063.1| - 2.2e-29 103.0 0.1 2.8e-29 102.7 0.1 1.1 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_11 PF13531.6 gi|289937461|ref|YP_003482063.1| - 3.2e-07 30.3 0.0 2.3e-06 27.5 0.0 1.9 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein PBP_like PF12727.7 gi|289937461|ref|YP_003482063.1| - 0.016 14.4 0.0 0.037 13.1 0.0 1.5 2 0 0 2 2 2 0 PBP superfamily domain TAT_signal PF10518.9 gi|289937461|ref|YP_003482063.1| - 3.2 7.7 5.3 4.7 7.2 2.8 2.5 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence BPD_transp_1 PF00528.22 gi|289937462|ref|YP_003482064.1| - 4.7e-14 52.5 14.8 4.7e-14 52.5 14.8 1.5 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component PRA1 PF03208.19 gi|289937462|ref|YP_003482064.1| - 6.4 6.4 8.0 3.7 7.2 3.3 2.2 2 0 0 2 2 2 0 PRA1 family protein ABC_tran PF00005.27 gi|289937463|ref|YP_003482065.1| - 3.1e-34 118.4 0.0 5.1e-34 117.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|289937463|ref|YP_003482065.1| - 1.4e-12 48.1 0.0 2e-06 27.8 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|289937463|ref|YP_003482065.1| - 5e-05 22.9 0.0 7.5e-05 22.3 0.0 1.3 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|289937463|ref|YP_003482065.1| - 0.0002 21.1 0.0 0.00043 20.0 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|289937463|ref|YP_003482065.1| - 0.00038 20.9 0.7 0.0011 19.4 0.7 1.8 1 1 0 1 1 1 1 AAA ATPase domain MMR_HSR1 PF01926.23 gi|289937463|ref|YP_003482065.1| - 0.0008 19.5 0.2 0.0077 16.3 0.2 2.3 1 1 0 1 1 1 1 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 gi|289937463|ref|YP_003482065.1| - 0.0011 18.9 0.0 0.0028 17.6 0.0 1.7 2 0 0 2 2 2 1 RsgA GTPase AAA_22 PF13401.6 gi|289937463|ref|YP_003482065.1| - 0.0032 17.7 0.0 0.006 16.9 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|289937463|ref|YP_003482065.1| - 0.0065 17.0 0.1 0.014 15.9 0.1 1.9 1 1 0 1 1 1 1 AAA domain SbcCD_C PF13558.6 gi|289937463|ref|YP_003482065.1| - 0.0097 16.1 0.3 0.22 11.8 0.3 2.3 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_25 PF13481.6 gi|289937463|ref|YP_003482065.1| - 0.014 15.0 0.0 0.026 14.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain DUF2813 PF11398.8 gi|289937463|ref|YP_003482065.1| - 0.017 14.4 0.0 0.047 13.0 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2813) AAA_15 PF13175.6 gi|289937463|ref|YP_003482065.1| - 0.022 14.5 0.0 0.47 10.1 0.0 2.1 1 1 0 2 2 2 0 AAA ATPase domain AAA_33 PF13671.6 gi|289937463|ref|YP_003482065.1| - 0.068 13.3 0.2 0.11 12.7 0.1 1.7 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|289937463|ref|YP_003482065.1| - 0.083 13.1 0.0 0.17 12.1 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|289937463|ref|YP_003482065.1| - 0.092 12.5 0.0 0.13 11.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|289937463|ref|YP_003482065.1| - 0.1 13.1 0.0 0.22 12.0 0.0 1.3 1 1 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|289937463|ref|YP_003482065.1| - 0.18 11.8 0.2 0.48 10.4 0.1 1.8 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) Rad17 PF03215.15 gi|289937463|ref|YP_003482065.1| - 0.18 11.7 0.0 0.26 11.2 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain NB-ARC PF00931.22 gi|289937463|ref|YP_003482065.1| - 0.21 10.8 0.0 0.34 10.1 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain TOBE PF03459.17 gi|289937464|ref|YP_003482066.1| - 5e-16 58.7 1.6 1.2e-14 54.4 0.1 3.0 2 1 1 3 3 3 1 TOBE domain HTH_1 PF00126.27 gi|289937464|ref|YP_003482066.1| - 2.2e-07 30.7 0.1 4.9e-07 29.6 0.1 1.6 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family GTP-bdg_M PF16360.5 gi|289937464|ref|YP_003482066.1| - 0.014 16.0 0.9 0.028 15.0 0.9 1.4 1 0 0 1 1 1 0 GTP-binding GTPase Middle Region He_PIG PF05345.12 gi|289937464|ref|YP_003482066.1| - 0.36 11.1 2.1 4.7 7.5 0.2 2.5 1 1 1 2 2 2 0 Putative Ig domain AAA_31 PF13614.6 gi|289937465|ref|YP_003482067.1| - 1.2e-21 77.4 0.0 1.8e-21 76.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|289937465|ref|YP_003482067.1| - 2.7e-08 33.9 0.0 3.7e-08 33.5 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain CBP_BcsQ PF06564.12 gi|289937465|ref|YP_003482067.1| - 2.9e-08 33.5 0.0 5.7e-08 32.5 0.0 1.4 2 0 0 2 2 2 1 Cellulose biosynthesis protein BcsQ ATP_bind_1 PF03029.17 gi|289937465|ref|YP_003482067.1| - 0.00018 21.4 0.0 0.069 12.9 0.0 2.3 2 0 0 2 2 2 2 Conserved hypothetical ATP binding protein MipZ PF09140.11 gi|289937465|ref|YP_003482067.1| - 0.00021 20.6 0.2 0.021 14.1 0.2 2.7 2 1 0 2 2 2 1 ATPase MipZ ArsA_ATPase PF02374.15 gi|289937465|ref|YP_003482067.1| - 0.00056 19.2 0.1 0.0011 18.2 0.1 1.4 1 1 0 1 1 1 1 Anion-transporting ATPase MeaB PF03308.16 gi|289937465|ref|YP_003482067.1| - 0.014 14.4 0.1 0.022 13.7 0.1 1.2 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB ParA PF10609.9 gi|289937465|ref|YP_003482067.1| - 0.056 12.9 0.2 0.13 11.7 0.1 1.6 2 0 0 2 2 2 0 NUBPL iron-transfer P-loop NTPase Trypan_PARP PF05887.11 gi|289937466|ref|YP_003482068.1| - 0.0035 17.3 27.5 0.0054 16.7 27.5 1.3 1 0 0 1 1 1 1 Procyclic acidic repetitive protein (PARP) Peptidase_S9 PF00326.21 gi|289937467|ref|YP_003482069.1| - 1.1e-32 113.2 1.0 1.6e-32 112.7 1.0 1.2 1 0 0 1 1 1 1 Prolyl oligopeptidase family DPPIV_N PF00930.21 gi|289937467|ref|YP_003482069.1| - 1.6e-08 33.7 0.0 4.5e-07 28.9 0.0 2.3 2 0 0 2 2 2 1 Dipeptidyl peptidase IV (DPP IV) N-terminal region Peptidase_S15 PF02129.18 gi|289937467|ref|YP_003482069.1| - 5.3e-08 32.8 2.5 8.6e-06 25.5 0.7 2.3 1 1 1 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) PD40 PF07676.12 gi|289937467|ref|YP_003482069.1| - 1.1e-07 31.6 12.8 0.00043 20.1 0.2 5.7 7 0 0 7 7 7 2 WD40-like Beta Propeller Repeat DLH PF01738.18 gi|289937467|ref|YP_003482069.1| - 5e-06 26.2 0.7 0.00013 21.6 0.7 2.1 1 1 0 1 1 1 1 Dienelactone hydrolase family PQQ_2 PF13360.6 gi|289937467|ref|YP_003482069.1| - 0.00072 19.2 0.0 0.0012 18.5 0.0 1.4 1 0 0 1 1 1 1 PQQ-like domain Hydrolase_4 PF12146.8 gi|289937467|ref|YP_003482069.1| - 0.0068 15.7 0.3 2.5 7.3 0.1 2.2 2 0 0 2 2 2 2 Serine aminopeptidase, S33 Esterase PF00756.20 gi|289937467|ref|YP_003482069.1| - 0.031 13.9 0.0 0.05 13.3 0.0 1.4 1 0 0 1 1 1 0 Putative esterase ANAPC4_WD40 PF12894.7 gi|289937467|ref|YP_003482069.1| - 0.21 11.9 0.0 32 4.9 0.0 3.8 3 1 1 4 4 4 0 Anaphase-promoting complex subunit 4 WD40 domain Abhydrolase_1 PF00561.20 gi|289937467|ref|YP_003482069.1| - 2 8.0 4.1 3.6 7.1 3.2 1.7 1 1 1 2 2 2 0 alpha/beta hydrolase fold AAA_16 PF13191.6 gi|289937468|ref|YP_003482070.1| - 8e-08 32.8 0.0 9.5e-08 32.6 0.0 1.1 1 0 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|289937468|ref|YP_003482070.1| - 4.7e-07 30.2 0.0 6.4e-07 29.7 0.0 1.2 1 0 0 1 1 1 1 AAA domain Sigma54_activat PF00158.26 gi|289937468|ref|YP_003482070.1| - 4.7e-05 23.1 0.0 6.1e-05 22.8 0.0 1.1 1 0 0 1 1 1 1 Sigma-54 interaction domain Mg_chelatase PF01078.21 gi|289937468|ref|YP_003482070.1| - 0.0002 20.8 0.0 0.00024 20.6 0.0 1.1 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI ATP-synt_ab PF00006.25 gi|289937468|ref|YP_003482070.1| - 0.00069 19.3 0.0 0.0009 18.9 0.0 1.1 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain DUF815 PF05673.13 gi|289937468|ref|YP_003482070.1| - 0.0015 17.7 0.0 0.0016 17.6 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF815) T2SSE PF00437.20 gi|289937468|ref|YP_003482070.1| - 0.0023 17.1 0.0 0.0024 17.0 0.0 1.1 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_23 PF13476.6 gi|289937468|ref|YP_003482070.1| - 0.0047 17.5 0.0 0.0054 17.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain TrwB_AAD_bind PF10412.9 gi|289937468|ref|YP_003482070.1| - 0.0071 15.3 0.0 0.0088 15.0 0.0 1.1 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain TniB PF05621.11 gi|289937468|ref|YP_003482070.1| - 0.0083 15.6 0.0 0.01 15.2 0.0 1.1 1 0 0 1 1 1 1 Bacterial TniB protein NACHT PF05729.12 gi|289937468|ref|YP_003482070.1| - 0.014 15.3 0.0 0.019 14.9 0.0 1.2 1 0 0 1 1 1 0 NACHT domain DUF87 PF01935.17 gi|289937468|ref|YP_003482070.1| - 0.015 15.4 0.0 0.021 14.9 0.0 1.2 1 0 0 1 1 1 0 Helicase HerA, central domain ResIII PF04851.15 gi|289937468|ref|YP_003482070.1| - 0.015 15.3 0.0 0.018 15.1 0.0 1.2 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit FtsK_SpoIIIE PF01580.18 gi|289937468|ref|YP_003482070.1| - 0.016 14.5 0.0 0.019 14.3 0.0 1.2 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA PF00004.29 gi|289937468|ref|YP_003482070.1| - 0.021 15.2 0.0 0.035 14.5 0.0 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) ABC_tran PF00005.27 gi|289937468|ref|YP_003482070.1| - 0.023 15.2 0.0 0.03 14.8 0.0 1.3 1 0 0 1 1 1 0 ABC transporter TsaE PF02367.17 gi|289937468|ref|YP_003482070.1| - 0.028 14.4 0.0 0.038 14.0 0.0 1.2 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE Zeta_toxin PF06414.12 gi|289937468|ref|YP_003482070.1| - 0.036 13.3 0.0 0.05 12.9 0.0 1.2 1 0 0 1 1 1 0 Zeta toxin IstB_IS21 PF01695.17 gi|289937468|ref|YP_003482070.1| - 0.039 13.7 0.0 0.047 13.4 0.0 1.2 1 0 0 1 1 1 0 IstB-like ATP binding protein cobW PF02492.19 gi|289937468|ref|YP_003482070.1| - 0.041 13.5 0.0 0.056 13.0 0.0 1.2 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain NB-ARC PF00931.22 gi|289937468|ref|YP_003482070.1| - 0.055 12.6 0.0 0.06 12.5 0.0 1.1 1 0 0 1 1 1 0 NB-ARC domain PhoH PF02562.16 gi|289937468|ref|YP_003482070.1| - 0.063 12.7 0.0 0.074 12.5 0.0 1.2 1 0 0 1 1 1 0 PhoH-like protein PIF1 PF05970.14 gi|289937468|ref|YP_003482070.1| - 0.076 12.2 0.0 0.081 12.1 0.0 1.1 1 0 0 1 1 1 0 PIF1-like helicase AAA_30 PF13604.6 gi|289937468|ref|YP_003482070.1| - 0.095 12.4 0.2 0.14 11.9 0.2 1.4 1 1 0 1 1 1 0 AAA domain DEAD PF00270.29 gi|289937468|ref|YP_003482070.1| - 0.11 12.3 0.0 0.14 11.9 0.0 1.2 1 0 0 1 1 1 0 DEAD/DEAH box helicase Bac_DnaA PF00308.18 gi|289937468|ref|YP_003482070.1| - 0.13 12.1 0.0 0.18 11.6 0.0 1.3 1 0 0 1 1 1 0 Bacterial dnaA protein AAA_18 PF13238.6 gi|289937468|ref|YP_003482070.1| - 0.13 12.8 0.0 0.19 12.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_7 PF12775.7 gi|289937468|ref|YP_003482070.1| - 0.15 11.6 0.0 0.21 11.1 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region ATPase_2 PF01637.18 gi|289937468|ref|YP_003482070.1| - 0.18 11.7 0.0 0.19 11.6 0.0 1.1 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_13 PF13166.6 gi|289937468|ref|YP_003482070.1| - 0.25 9.9 0.0 0.28 9.8 0.0 1.1 1 0 0 1 1 1 0 AAA domain MFS_1 PF07690.16 gi|289937469|ref|YP_003482071.1| - 1e-47 162.8 35.8 6.6e-27 94.4 18.0 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_3 PF05977.13 gi|289937469|ref|YP_003482071.1| - 0.0018 16.8 15.4 0.011 14.2 2.6 2.3 1 1 1 2 2 2 2 Transmembrane secretion effector OATP PF03137.20 gi|289937469|ref|YP_003482071.1| - 0.037 12.3 10.4 0.04 12.2 4.4 2.7 2 1 0 2 2 2 0 Organic Anion Transporter Polypeptide (OATP) family Sugar_tr PF00083.24 gi|289937469|ref|YP_003482071.1| - 0.058 12.2 19.0 0.36 9.6 8.6 2.4 2 1 0 2 2 2 0 Sugar (and other) transporter DUF2109 PF09882.9 gi|289937469|ref|YP_003482071.1| - 0.7 10.0 4.1 2.1 8.4 0.1 2.9 2 0 0 2 2 2 0 Predicted membrane protein (DUF2109) MFS_1 PF07690.16 gi|289937470|ref|YP_003482072.1| - 7.4e-27 94.2 13.7 9.1e-27 93.9 13.7 1.1 1 0 0 1 1 1 1 Major Facilitator Superfamily MFS_3 PF05977.13 gi|289937470|ref|YP_003482072.1| - 0.0057 15.1 3.5 0.0066 14.9 3.5 1.1 1 0 0 1 1 1 1 Transmembrane secretion effector TRI12 PF06609.13 gi|289937470|ref|YP_003482072.1| - 0.0099 14.3 3.3 0.011 14.2 3.3 1.2 1 0 0 1 1 1 1 Fungal trichothecene efflux pump (TRI12) Sugar_tr PF00083.24 gi|289937470|ref|YP_003482072.1| - 0.013 14.4 11.9 0.019 13.9 11.9 1.3 1 0 0 1 1 1 0 Sugar (and other) transporter BT1 PF03092.16 gi|289937470|ref|YP_003482072.1| - 0.19 9.9 2.5 0.34 9.1 2.5 1.4 1 1 0 1 1 1 0 BT1 family OrfB_IS605 PF01385.19 gi|289937471|ref|YP_003482073.1| - 5.9e-25 87.8 0.2 1.3e-24 86.7 0.0 1.7 2 0 0 2 2 2 1 Probable transposase OrfB_Zn_ribbon PF07282.11 gi|289937471|ref|YP_003482073.1| - 4.4e-22 77.8 1.4 4.4e-22 77.8 1.4 2.0 2 0 0 2 2 2 1 Putative transposase DNA-binding domain C1_2 PF03107.16 gi|289937471|ref|YP_003482073.1| - 0.0017 18.6 1.2 0.0049 17.1 1.2 1.8 1 0 0 1 1 1 1 C1 domain Ribosomal_L37ae PF01780.19 gi|289937471|ref|YP_003482073.1| - 0.066 13.3 0.9 0.18 11.9 0.9 1.7 1 0 0 1 1 1 0 Ribosomal L37ae protein family Cas_TM1802 PF09484.10 gi|289937471|ref|YP_003482073.1| - 0.21 10.3 0.1 0.3 9.8 0.1 1.2 1 0 0 1 1 1 0 CRISPR-associated protein TM1802 (cas_TM1802) zf-C4_ClpX PF06689.13 gi|289937471|ref|YP_003482073.1| - 1.7 8.6 5.8 5.6 6.9 5.8 1.9 1 1 0 1 1 1 0 ClpX C4-type zinc finger MFS_1 PF07690.16 gi|289937472|ref|YP_003482074.1| - 0.00035 19.6 17.4 0.0004 19.4 17.4 1.0 1 0 0 1 1 1 1 Major Facilitator Superfamily DSRB PF10781.9 gi|289937472|ref|YP_003482074.1| - 0.11 12.1 0.0 0.23 11.1 0.0 1.5 1 0 0 1 1 1 0 Dextransucrase DSRB DAO PF01266.24 gi|289937473|ref|YP_003482075.1| - 4.6e-56 190.9 9.3 5.2e-56 190.7 9.3 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|289937473|ref|YP_003482075.1| - 2.6e-09 36.7 2.3 3.4e-09 36.3 2.3 1.1 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.14 gi|289937473|ref|YP_003482075.1| - 2e-07 30.5 0.7 0.012 14.9 0.2 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|289937473|ref|YP_003482075.1| - 2.3e-07 30.2 1.6 0.0043 16.2 0.0 2.3 2 0 0 2 2 2 2 Glucose inhibited division protein A FAD_binding_3 PF01494.19 gi|289937473|ref|YP_003482075.1| - 4.6e-05 22.8 2.6 0.0017 17.7 1.3 2.2 2 0 0 2 2 2 1 FAD binding domain NAD_binding_8 PF13450.6 gi|289937473|ref|YP_003482075.1| - 0.00017 21.7 1.1 0.00059 20.0 0.9 2.0 1 1 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Lycopene_cycl PF05834.12 gi|289937473|ref|YP_003482075.1| - 0.00028 20.0 0.7 0.041 12.9 0.0 2.2 2 0 0 2 2 2 2 Lycopene cyclase protein ApbA PF02558.16 gi|289937473|ref|YP_003482075.1| - 0.00052 19.7 0.6 0.0013 18.4 0.6 1.7 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA 3HCDH_N PF02737.18 gi|289937473|ref|YP_003482075.1| - 0.0013 18.7 0.2 0.0021 18.0 0.2 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Trp_halogenase PF04820.14 gi|289937473|ref|YP_003482075.1| - 0.0021 17.0 3.2 0.011 14.7 3.2 1.9 1 1 0 1 1 1 1 Tryptophan halogenase NAD_binding_9 PF13454.6 gi|289937473|ref|YP_003482075.1| - 0.0022 18.0 6.2 0.0036 17.3 0.1 2.8 3 0 0 3 3 3 1 FAD-NAD(P)-binding Pyr_redox_3 PF13738.6 gi|289937473|ref|YP_003482075.1| - 0.0057 16.0 0.1 2 7.6 0.0 2.1 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|289937473|ref|YP_003482075.1| - 0.019 13.7 1.8 0.22 10.2 0.0 2.1 2 0 0 2 2 2 0 HI0933-like protein Pyr_redox PF00070.27 gi|289937473|ref|YP_003482075.1| - 0.035 14.6 2.4 0.24 12.0 1.1 2.5 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|289937473|ref|YP_003482075.1| - 0.084 12.2 2.8 0.41 9.9 2.8 1.9 1 1 0 1 1 1 0 FAD dependent oxidoreductase GMC_oxred_N PF00732.19 gi|289937473|ref|YP_003482075.1| - 0.1 12.0 0.2 14 5.0 0.0 2.2 2 0 0 2 2 2 0 GMC oxidoreductase Amidohydro_3 PF07969.11 gi|289937474|ref|YP_003482076.1| - 1.9e-36 126.6 5.9 2.4e-36 126.2 5.9 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_1 PF01979.20 gi|289937474|ref|YP_003482076.1| - 1.9e-13 50.4 0.1 3.1e-10 39.9 0.0 2.8 4 0 0 4 4 4 2 Amidohydrolase family Peptidase_M20 PF01546.28 gi|289937475|ref|YP_003482077.1| - 5.7e-29 101.3 1.0 9.6e-29 100.6 1.0 1.4 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|289937475|ref|YP_003482077.1| - 1.2e-08 34.8 0.2 2e-08 34.1 0.2 1.4 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M28 PF04389.17 gi|289937475|ref|YP_003482077.1| - 4.9e-08 32.9 0.0 8.4e-08 32.1 0.0 1.4 1 0 0 1 1 1 1 Peptidase family M28 OrfB_Zn_ribbon PF07282.11 gi|289937476|ref|YP_003482078.1| - 2.3e-17 62.6 2.1 5.1e-17 61.5 2.1 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain PIN PF01850.21 gi|289937478|ref|YP_003482080.1| - 6.1e-09 36.4 1.5 1.8e-08 34.9 1.5 1.7 1 1 0 1 1 1 1 PIN domain PIN_3 PF13470.6 gi|289937478|ref|YP_003482080.1| - 0.053 14.3 1.5 0.2 12.5 1.5 1.9 1 1 0 1 1 1 0 PIN domain PIN_9 PF18477.1 gi|289937478|ref|YP_003482080.1| - 0.084 13.2 0.1 0.16 12.3 0.1 1.5 1 1 0 1 1 1 0 PIN like domain MazE_antitoxin PF04014.18 gi|289937479|ref|YP_003482081.1| - 2.7e-06 27.2 0.3 5.2e-06 26.3 0.3 1.6 1 1 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin MraZ PF02381.18 gi|289937479|ref|YP_003482081.1| - 0.042 13.8 0.0 0.063 13.3 0.0 1.3 1 0 0 1 1 1 0 MraZ protein, putative antitoxin-like Amidohydro_1 PF01979.20 gi|289937480|ref|YP_003482082.1| - 1.1e-23 84.1 0.0 1.8e-23 83.4 0.0 1.3 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|289937480|ref|YP_003482082.1| - 4.3e-17 62.7 0.7 2.7e-08 33.7 0.0 2.8 2 1 1 3 3 3 2 Amidohydrolase family 2-Hacid_dh_C PF02826.19 gi|289937481|ref|YP_003482083.1| - 6.3e-52 175.5 0.0 8.3e-52 175.1 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|289937481|ref|YP_003482083.1| - 2.8e-12 46.4 0.0 3.6e-12 46.1 0.0 1.1 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain F420_oxidored PF03807.17 gi|289937481|ref|YP_003482083.1| - 0.00011 22.7 0.0 0.0002 21.9 0.0 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent IlvN PF07991.12 gi|289937481|ref|YP_003482083.1| - 0.0004 20.0 0.0 0.00065 19.3 0.0 1.3 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain Shikimate_DH PF01488.20 gi|289937481|ref|YP_003482083.1| - 0.0009 19.3 0.0 0.0022 18.1 0.0 1.7 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase NAD_binding_2 PF03446.15 gi|289937481|ref|YP_003482083.1| - 0.00094 19.4 0.0 0.0029 17.8 0.1 1.8 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_7 PF13241.6 gi|289937481|ref|YP_003482083.1| - 0.0076 16.7 0.0 0.019 15.4 0.0 1.7 1 0 0 1 1 1 1 Putative NAD(P)-binding TrkA_N PF02254.18 gi|289937481|ref|YP_003482083.1| - 0.0085 16.3 0.8 0.015 15.5 0.1 1.8 2 0 0 2 2 2 1 TrkA-N domain ThiF PF00899.21 gi|289937481|ref|YP_003482083.1| - 0.012 15.0 0.0 0.019 14.3 0.0 1.2 1 0 0 1 1 1 0 ThiF family 3HCDH_N PF02737.18 gi|289937481|ref|YP_003482083.1| - 0.044 13.7 1.2 0.086 12.7 0.1 1.9 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|289937481|ref|YP_003482083.1| - 0.1 12.8 0.2 0.33 11.2 0.0 1.9 2 1 0 2 2 2 0 Saccharopine dehydrogenase NADP binding domain ApbA PF02558.16 gi|289937481|ref|YP_003482083.1| - 0.15 11.7 0.1 0.34 10.5 0.1 1.7 1 1 0 1 1 1 0 Ketopantoate reductase PanE/ApbA TrkA_C PF02080.21 gi|289937481|ref|YP_003482083.1| - 0.4 10.5 1.7 0.41 10.5 0.1 1.9 2 0 0 2 2 2 0 TrkA-C domain Peptidase_M20 PF01546.28 gi|289937482|ref|YP_003482084.1| - 5.2e-21 75.3 1.5 8.8e-21 74.6 1.5 1.4 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|289937482|ref|YP_003482084.1| - 1.1e-10 41.4 0.6 2.4e-10 40.3 0.6 1.5 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M28 PF04389.17 gi|289937483|ref|YP_003482085.1| - 1.8e-30 106.1 0.3 2.4e-30 105.7 0.3 1.2 1 0 0 1 1 1 1 Peptidase family M28 PA PF02225.22 gi|289937483|ref|YP_003482085.1| - 1.3e-12 47.6 0.1 4.2e-12 45.9 0.0 1.9 2 0 0 2 2 2 1 PA domain Peptidase_M42 PF05343.14 gi|289937483|ref|YP_003482085.1| - 0.0072 15.4 0.0 0.019 14.0 0.1 1.6 2 0 0 2 2 2 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.28 gi|289937483|ref|YP_003482085.1| - 0.1 12.3 0.7 0.48 10.1 0.7 2.0 1 1 0 1 1 1 0 Peptidase family M20/M25/M40 PmbA_TldD PF01523.16 gi|289937484|ref|YP_003482086.1| - 1.2e-29 104.1 0.1 1.9e-29 103.4 0.1 1.3 1 0 0 1 1 1 1 Putative modulator of DNA gyrase UPF0052 PF01933.18 gi|289937484|ref|YP_003482086.1| - 0.073 12.3 0.0 0.13 11.5 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised protein family UPF0052 ABC_tran PF00005.27 gi|289937485|ref|YP_003482087.1| - 1e-31 110.3 0.0 1.5e-31 109.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|289937485|ref|YP_003482087.1| - 1.8e-17 63.6 0.0 4.2e-17 62.4 0.0 1.7 2 0 0 2 2 2 1 Oligopeptide/dipeptide transporter, C-terminal region tRNA_lig_kinase PF08303.11 gi|289937485|ref|YP_003482087.1| - 0.018 15.2 0.0 0.027 14.6 0.0 1.3 1 0 0 1 1 1 0 tRNA ligase kinase domain PRK PF00485.18 gi|289937485|ref|YP_003482087.1| - 0.025 14.3 0.0 0.036 13.8 0.0 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA_22 PF13401.6 gi|289937485|ref|YP_003482087.1| - 0.066 13.5 0.4 0.21 11.9 0.4 1.9 1 1 0 1 1 1 0 AAA domain Rad17 PF03215.15 gi|289937485|ref|YP_003482087.1| - 0.2 11.6 0.0 0.32 10.9 0.0 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain ABC_tran PF00005.27 gi|289937486|ref|YP_003482088.1| - 2.2e-29 102.7 0.0 3.1e-29 102.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|289937486|ref|YP_003482088.1| - 1.9e-19 69.9 0.2 3.5e-19 69.1 0.2 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region SMC_N PF02463.19 gi|289937486|ref|YP_003482088.1| - 5.9e-06 25.9 0.3 1.8e-05 24.3 0.3 1.6 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|289937486|ref|YP_003482088.1| - 5.3e-05 23.2 0.6 0.2 11.4 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|289937486|ref|YP_003482088.1| - 0.00039 20.8 0.0 0.0013 19.2 0.0 1.8 1 1 0 1 1 1 1 AAA ATPase domain IstB_IS21 PF01695.17 gi|289937486|ref|YP_003482088.1| - 0.0015 18.3 0.0 0.0048 16.6 0.0 1.8 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_29 PF13555.6 gi|289937486|ref|YP_003482088.1| - 0.002 17.8 0.0 0.0035 17.1 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain Mg_chelatase PF01078.21 gi|289937486|ref|YP_003482088.1| - 0.0021 17.5 0.0 0.0059 16.0 0.0 1.6 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_22 PF13401.6 gi|289937486|ref|YP_003482088.1| - 0.0061 16.8 0.2 0.019 15.2 0.2 1.8 1 1 0 1 1 1 1 AAA domain ABC_ATPase PF09818.9 gi|289937486|ref|YP_003482088.1| - 0.0067 15.3 1.7 0.43 9.3 1.4 2.5 2 1 0 2 2 2 1 Predicted ATPase of the ABC class RsgA_GTPase PF03193.16 gi|289937486|ref|YP_003482088.1| - 0.011 15.7 0.2 0.025 14.5 0.0 1.6 2 0 0 2 2 2 0 RsgA GTPase NB-ARC PF00931.22 gi|289937486|ref|YP_003482088.1| - 0.012 14.9 0.5 0.044 13.0 0.0 2.1 3 0 0 3 3 3 0 NB-ARC domain AAA_23 PF13476.6 gi|289937486|ref|YP_003482088.1| - 0.021 15.3 0.0 0.034 14.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|289937486|ref|YP_003482088.1| - 0.022 14.7 0.5 0.21 11.5 0.2 2.2 1 1 1 2 2 2 0 NACHT domain AAA_18 PF13238.6 gi|289937486|ref|YP_003482088.1| - 0.05 14.1 0.0 0.11 13.1 0.0 1.6 1 0 0 1 1 1 0 AAA domain DUF87 PF01935.17 gi|289937486|ref|YP_003482088.1| - 0.053 13.6 0.6 0.56 10.3 0.3 2.1 1 1 1 2 2 2 0 Helicase HerA, central domain MMR_HSR1 PF01926.23 gi|289937486|ref|YP_003482088.1| - 0.06 13.4 0.2 0.18 11.9 0.2 1.8 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA PF00004.29 gi|289937486|ref|YP_003482088.1| - 0.062 13.7 0.9 0.16 12.4 0.2 2.2 2 1 0 2 2 1 0 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 gi|289937486|ref|YP_003482088.1| - 0.085 12.6 0.2 0.66 9.7 0.0 2.0 2 0 0 2 2 2 0 Sigma-54 interaction domain MobB PF03205.14 gi|289937486|ref|YP_003482088.1| - 0.085 12.8 0.2 0.21 11.5 0.0 1.7 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B PRK PF00485.18 gi|289937486|ref|YP_003482088.1| - 0.11 12.2 0.0 0.18 11.5 0.0 1.4 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA_5 PF07728.14 gi|289937486|ref|YP_003482088.1| - 0.12 12.4 0.1 0.33 10.9 0.1 1.8 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) RNA_helicase PF00910.22 gi|289937486|ref|YP_003482088.1| - 0.13 12.7 0.0 0.25 11.8 0.0 1.5 1 0 0 1 1 1 0 RNA helicase ATP-synt_ab PF00006.25 gi|289937486|ref|YP_003482088.1| - 0.16 11.6 0.1 0.37 10.4 0.1 1.4 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain BPD_transp_1 PF00528.22 gi|289937487|ref|YP_003482089.1| - 5.8e-22 78.3 11.8 5.8e-22 78.3 11.8 1.9 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|289937487|ref|YP_003482089.1| - 1.2e-06 28.4 0.1 1.2e-06 28.4 0.1 2.5 3 0 0 3 3 3 1 N-terminal TM domain of oligopeptide transport permease C Phage_holin_3_6 PF07332.11 gi|289937487|ref|YP_003482089.1| - 0.049 13.7 7.7 26 4.9 0.0 3.3 3 0 0 3 3 3 0 Putative Actinobacterial Holin-X, holin superfamily III BPD_transp_1 PF00528.22 gi|289937488|ref|YP_003482090.1| - 3.1e-40 137.9 9.8 3.1e-40 137.9 9.8 2.4 2 1 1 3 3 3 1 Binding-protein-dependent transport system inner membrane component SBP_bac_5 PF00496.22 gi|289937489|ref|YP_003482091.1| - 1.6e-48 165.6 0.1 9.5e-39 133.4 0.0 2.1 2 0 0 2 2 2 2 Bacterial extracellular solute-binding proteins, family 5 Middle Peptidase_M28 PF04389.17 gi|289937490|ref|YP_003482092.1| - 2.9e-34 118.5 0.1 4e-34 118.0 0.1 1.2 1 0 0 1 1 1 1 Peptidase family M28 PA PF02225.22 gi|289937490|ref|YP_003482092.1| - 8.8e-13 48.1 0.0 1.6e-12 47.2 0.0 1.4 1 0 0 1 1 1 1 PA domain Peptidase_M42 PF05343.14 gi|289937490|ref|YP_003482092.1| - 0.0044 16.1 0.3 0.054 12.5 0.0 2.3 1 1 0 2 2 2 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.28 gi|289937490|ref|YP_003482092.1| - 0.035 13.8 0.1 0.063 13.0 0.1 1.5 1 0 0 1 1 1 0 Peptidase family M20/M25/M40 DUF4910 PF16254.5 gi|289937490|ref|YP_003482092.1| - 0.12 11.2 0.0 0.15 10.9 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4910) Peptidase_M28 PF04389.17 gi|289937491|ref|YP_003482093.1| - 1.7e-35 122.5 0.0 2.3e-35 122.1 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M28 PA PF02225.22 gi|289937491|ref|YP_003482093.1| - 1e-12 47.9 0.0 5.2e-12 45.6 0.0 2.2 3 0 0 3 3 3 1 PA domain Peptidase_M20 PF01546.28 gi|289937491|ref|YP_003482093.1| - 3.7e-06 26.8 0.1 5.3e-06 26.3 0.1 1.3 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M42 PF05343.14 gi|289937491|ref|YP_003482093.1| - 0.00013 21.1 0.1 0.00021 20.4 0.1 1.3 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Nicastrin PF05450.15 gi|289937491|ref|YP_003482093.1| - 0.02 14.3 0.0 0.035 13.6 0.0 1.3 1 0 0 1 1 1 0 Nicastrin PGA_cap PF09587.10 gi|289937492|ref|YP_003482094.1| - 3.4e-60 203.6 0.0 4.5e-60 203.3 0.0 1.1 1 0 0 1 1 1 1 Bacterial capsule synthesis protein PGA_cap NT5C PF06941.12 gi|289937493|ref|YP_003482095.1| - 2.1e-05 24.5 0.0 2.6e-05 24.2 0.0 1.1 1 0 0 1 1 1 1 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) Peptidase_M20 PF01546.28 gi|289937494|ref|YP_003482096.1| - 4.6e-28 98.3 0.2 9.9e-28 97.3 0.2 1.5 2 0 0 2 2 2 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|289937494|ref|YP_003482096.1| - 3.3e-05 23.8 0.1 0.00023 21.0 0.0 2.3 2 0 0 2 2 2 1 Peptidase dimerisation domain Peptidase_M28 PF04389.17 gi|289937494|ref|YP_003482096.1| - 0.00011 22.0 0.0 0.00061 19.5 0.0 2.1 2 0 0 2 2 2 1 Peptidase family M28 Peptidase_M42 PF05343.14 gi|289937494|ref|YP_003482096.1| - 0.0021 17.2 0.0 0.027 13.5 0.0 2.4 2 1 1 3 3 3 1 M42 glutamyl aminopeptidase Pribosyltran PF00156.27 gi|289937495|ref|YP_003482097.1| - 3.6e-17 62.3 1.4 4.7e-17 61.9 1.4 1.1 1 0 0 1 1 1 1 Phosphoribosyl transferase domain Peptidase_M55 PF04951.13 gi|289937496|ref|YP_003482098.1| - 9e-89 297.4 1.4 1e-88 297.2 1.4 1.0 1 0 0 1 1 1 1 D-aminopeptidase FAM47 PF14642.6 gi|289937496|ref|YP_003482098.1| - 0.037 13.6 0.0 0.053 13.1 0.0 1.1 1 0 0 1 1 1 0 FAM47 family Peptidase_M20 PF01546.28 gi|289937498|ref|YP_003482100.1| - 4.8e-31 108.1 0.5 6.4e-31 107.7 0.5 1.2 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|289937498|ref|YP_003482100.1| - 1.3e-15 57.3 0.0 2.2e-15 56.5 0.0 1.4 1 0 0 1 1 1 1 Peptidase dimerisation domain PALP PF00291.25 gi|289937499|ref|YP_003482101.1| - 6.3e-08 32.4 0.1 7.9e-08 32.1 0.1 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme PALP PF00291.25 gi|289937500|ref|YP_003482102.1| - 2.5e-56 191.3 0.0 3.2e-56 190.9 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme TAT_signal PF10518.9 gi|289937501|ref|YP_003482103.1| - 0.0013 18.4 0.4 0.0021 17.8 0.4 1.4 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Phage_integrase PF00589.22 gi|289937502|ref|YP_003482104.1| - 2.7e-10 40.3 0.0 6.8e-10 39.0 0.0 1.7 1 1 0 1 1 1 1 Phage integrase family Phage_int_SAM_5 PF13102.6 gi|289937502|ref|YP_003482104.1| - 3.2e-05 24.2 0.0 5.7e-05 23.4 0.0 1.3 1 0 0 1 1 1 1 Phage integrase SAM-like domain Nitroreductase PF00881.24 gi|289937504|ref|YP_003482106.1| - 8.5e-26 91.0 0.0 1e-25 90.8 0.0 1.1 1 0 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.6 gi|289937504|ref|YP_003482106.1| - 1.3e-05 24.9 0.0 0.047 13.3 0.0 2.2 2 0 0 2 2 2 2 Putative TM nitroreductase Usp PF00582.26 gi|289937505|ref|YP_003482107.1| - 2.5e-30 105.8 0.3 2.8e-30 105.7 0.3 1.0 1 0 0 1 1 1 1 Universal stress protein family ETF PF01012.21 gi|289937505|ref|YP_003482107.1| - 0.16 11.8 2.4 0.21 11.4 0.3 2.0 1 1 1 2 2 2 0 Electron transfer flavoprotein domain PYNP_C PF07831.13 gi|289937506|ref|YP_003482108.1| - 4.4e-11 42.3 0.0 1.2e-10 40.9 0.0 1.8 1 0 0 1 1 1 1 Pyrimidine nucleoside phosphorylase C-terminal domain Glycos_trans_3N PF02885.17 gi|289937506|ref|YP_003482108.1| - 6e-10 38.8 0.0 1.2e-09 37.8 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase family, helical bundle domain Glycos_transf_3 PF00591.21 gi|289937506|ref|YP_003482108.1| - 1e-07 31.8 0.5 2.3e-07 30.7 0.5 1.5 1 0 0 1 1 1 1 Glycosyl transferase family, a/b domain DUF2254 PF10011.9 gi|289937506|ref|YP_003482108.1| - 0.0074 15.2 0.0 0.011 14.5 0.0 1.2 1 0 0 1 1 1 1 Predicted membrane protein (DUF2254) DUF4315 PF14193.6 gi|289937506|ref|YP_003482108.1| - 0.19 11.7 0.0 0.44 10.6 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4315) Usp PF00582.26 gi|289937507|ref|YP_003482109.1| - 9.2e-26 91.0 0.0 1.1e-25 90.8 0.0 1.1 1 0 0 1 1 1 1 Universal stress protein family CoA_transf_3 PF02515.17 gi|289937508|ref|YP_003482110.1| - 5.4e-114 381.1 0.0 6.1e-114 381.0 0.0 1.0 1 0 0 1 1 1 1 CoA-transferase family III IclR PF01614.18 gi|289937509|ref|YP_003482111.1| - 1.5e-27 96.0 0.0 1.4e-26 92.8 0.0 2.1 2 0 0 2 2 2 1 Bacterial transcriptional regulator HTH_IclR PF09339.10 gi|289937509|ref|YP_003482111.1| - 7.6e-11 41.6 0.5 3.6e-08 33.1 0.0 3.4 3 0 0 3 3 3 1 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|289937509|ref|YP_003482111.1| - 1e-08 34.6 0.0 1.1e-07 31.3 0.0 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|289937509|ref|YP_003482111.1| - 8.9e-08 32.1 0.0 2.1e-07 30.9 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|289937509|ref|YP_003482111.1| - 1.8e-07 30.9 0.1 6.4e-07 29.1 0.0 1.9 2 0 0 2 2 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|289937509|ref|YP_003482111.1| - 4.9e-07 29.6 0.1 1.6e-05 24.7 0.0 2.7 3 0 0 3 3 3 1 MarR family HTH_11 PF08279.12 gi|289937509|ref|YP_003482111.1| - 2e-06 27.6 0.0 6.1e-06 26.1 0.0 1.9 1 0 0 1 1 1 1 HTH domain MarR PF01047.22 gi|289937509|ref|YP_003482111.1| - 0.00015 21.6 0.8 0.00048 20.0 0.0 2.1 3 0 0 3 3 2 1 MarR family Rrf2 PF02082.20 gi|289937509|ref|YP_003482111.1| - 0.00022 21.5 0.1 0.00067 20.0 0.1 1.9 1 1 0 1 1 1 1 Transcriptional regulator HTH_40 PF14493.6 gi|289937509|ref|YP_003482111.1| - 0.00034 21.0 0.7 0.0011 19.4 0.1 2.1 2 1 0 2 2 2 1 Helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|289937509|ref|YP_003482111.1| - 0.00039 20.2 0.0 0.0038 17.0 0.0 2.2 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain SpoIIID PF12116.8 gi|289937509|ref|YP_003482111.1| - 0.0011 19.1 0.2 0.0036 17.4 0.2 1.9 1 0 0 1 1 1 1 Stage III sporulation protein D TrmB PF01978.19 gi|289937509|ref|YP_003482111.1| - 0.0027 17.6 0.1 0.012 15.5 0.0 2.1 3 0 0 3 3 2 1 Sugar-specific transcriptional regulator TrmB HTH_DeoR PF08220.12 gi|289937509|ref|YP_003482111.1| - 0.004 16.9 0.1 0.0099 15.6 0.1 1.7 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain Sigma70_ECF PF07638.11 gi|289937509|ref|YP_003482111.1| - 0.004 17.1 0.0 0.0078 16.1 0.0 1.4 1 0 0 1 1 1 1 ECF sigma factor HTH_10 PF04967.12 gi|289937509|ref|YP_003482111.1| - 0.0046 16.7 0.1 0.02 14.7 0.0 2.0 2 0 0 2 2 2 1 HTH DNA binding domain B-block_TFIIIC PF04182.12 gi|289937509|ref|YP_003482111.1| - 0.0053 16.9 0.0 0.0098 16.0 0.0 1.5 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC HTH_34 PF13601.6 gi|289937509|ref|YP_003482111.1| - 0.006 16.7 0.1 0.014 15.5 0.0 1.6 2 0 0 2 2 1 1 Winged helix DNA-binding domain DUF1670 PF07900.11 gi|289937509|ref|YP_003482111.1| - 0.0079 15.6 0.8 0.027 13.8 0.2 1.9 1 1 1 2 2 2 1 Protein of unknown function (DUF1670) TetR_N PF00440.23 gi|289937509|ref|YP_003482111.1| - 0.012 15.4 0.4 0.074 12.9 0.1 2.5 3 0 0 3 3 2 0 Bacterial regulatory proteins, tetR family Fe_dep_repress PF01325.19 gi|289937509|ref|YP_003482111.1| - 0.019 15.2 0.0 0.041 14.1 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_36 PF13730.6 gi|289937509|ref|YP_003482111.1| - 0.02 14.9 0.0 0.066 13.2 0.0 1.9 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_23 PF13384.6 gi|289937509|ref|YP_003482111.1| - 0.02 14.7 0.1 0.097 12.5 0.0 2.1 2 0 0 2 2 2 0 Homeodomain-like domain HTH_9 PF08221.11 gi|289937509|ref|YP_003482111.1| - 0.025 14.7 0.1 0.059 13.5 0.1 1.6 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|289937509|ref|YP_003482111.1| - 0.041 13.9 0.1 0.18 11.8 0.0 2.1 2 1 0 2 2 1 0 Crp-like helix-turn-helix domain LexA_DNA_bind PF01726.16 gi|289937509|ref|YP_003482111.1| - 0.061 13.1 0.0 0.27 11.1 0.0 2.1 2 0 0 2 2 2 0 LexA DNA binding domain HTH_38 PF13936.6 gi|289937509|ref|YP_003482111.1| - 0.073 12.8 0.0 0.17 11.6 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain GAF PF01590.26 gi|289937509|ref|YP_003482111.1| - 0.077 13.6 0.0 0.57 10.8 0.0 2.1 1 1 0 1 1 1 0 GAF domain HTH_45 PF14947.6 gi|289937509|ref|YP_003482111.1| - 0.084 12.9 0.0 0.14 12.1 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_27 PF13463.6 gi|289937509|ref|YP_003482111.1| - 0.093 13.2 0.1 0.29 11.7 0.1 1.8 1 0 0 1 1 1 0 Winged helix DNA-binding domain RepL PF05732.11 gi|289937509|ref|YP_003482111.1| - 0.11 12.0 0.1 0.53 9.7 0.1 2.1 1 1 0 1 1 1 0 Firmicute plasmid replication protein (RepL) Sigma70_r4_2 PF08281.12 gi|289937509|ref|YP_003482111.1| - 0.11 12.2 0.7 0.28 10.9 0.0 2.0 3 0 0 3 3 2 0 Sigma-70, region 4 HTH_29 PF13551.6 gi|289937509|ref|YP_003482111.1| - 0.12 12.4 0.0 0.4 10.7 0.0 1.9 1 0 0 1 1 1 0 Winged helix-turn helix HTH_Tnp_ISL3 PF13542.6 gi|289937509|ref|YP_003482111.1| - 0.15 11.5 0.0 0.69 9.4 0.1 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 Sigma70_r4 PF04545.16 gi|289937509|ref|YP_003482111.1| - 0.17 11.4 2.1 0.31 10.6 0.1 2.4 3 0 0 3 3 3 0 Sigma-70, region 4 Thiolase_N PF00108.23 gi|289937510|ref|YP_003482112.1| - 1.7e-22 80.1 0.2 5.4e-22 78.4 0.2 1.8 1 1 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|289937510|ref|YP_003482112.1| - 5.2e-09 35.8 0.1 1.4e-08 34.5 0.1 1.7 1 0 0 1 1 1 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 gi|289937510|ref|YP_003482112.1| - 1.3e-06 28.2 0.8 3e-06 27.0 0.8 1.5 1 0 0 1 1 1 1 Beta-ketoacyl synthase, N-terminal domain ACP_syn_III PF08545.10 gi|289937510|ref|YP_003482112.1| - 0.029 14.2 1.3 0.59 10.0 0.1 2.5 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III DUF35_N PF12172.8 gi|289937511|ref|YP_003482113.1| - 1.4e-10 40.8 3.4 3.1e-10 39.7 3.4 1.5 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) ACP_syn_III_C PF08541.10 gi|289937511|ref|YP_003482113.1| - 0.00017 21.7 1.2 0.00056 20.0 1.1 2.0 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal OB_aCoA_assoc PF01796.17 gi|289937511|ref|YP_003482113.1| - 0.0044 17.0 1.2 0.012 15.6 1.2 1.8 1 0 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated DZR PF12773.7 gi|289937511|ref|YP_003482113.1| - 0.13 12.3 0.3 0.22 11.6 0.3 1.3 1 0 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|289937511|ref|YP_003482113.1| - 0.19 11.1 3.6 0.38 10.2 3.6 1.4 1 0 0 1 1 1 0 zinc-ribbon domain Rubredoxin_2 PF18073.1 gi|289937511|ref|YP_003482113.1| - 1.2 9.0 4.0 2.9 7.7 3.8 1.7 1 1 0 1 1 1 0 Rubredoxin metal binding domain zf-RRN7 PF11781.8 gi|289937511|ref|YP_003482113.1| - 4.6 7.0 5.0 11 5.8 0.6 2.4 1 1 1 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 3HCDH_N PF02737.18 gi|289937512|ref|YP_003482114.1| - 6.3e-62 208.6 0.8 8e-62 208.3 0.8 1.1 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 3HCDH PF00725.22 gi|289937512|ref|YP_003482114.1| - 1e-31 109.4 0.0 3.8e-31 107.6 0.0 2.0 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NAD_Gly3P_dh_N PF01210.23 gi|289937512|ref|YP_003482114.1| - 8.9e-07 29.0 0.8 2.6e-06 27.5 0.2 2.0 2 1 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus UDPG_MGDP_dh_N PF03721.14 gi|289937512|ref|YP_003482114.1| - 4.1e-06 26.5 0.3 8.6e-06 25.5 0.3 1.6 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_2 PF03446.15 gi|289937512|ref|YP_003482114.1| - 9.5e-06 25.9 1.8 9.5e-06 25.9 1.8 1.9 2 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 gi|289937512|ref|YP_003482114.1| - 8e-05 23.1 5.5 0.00014 22.4 1.9 2.7 2 1 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent AlaDh_PNT_C PF01262.21 gi|289937512|ref|YP_003482114.1| - 0.016 14.5 1.9 0.016 14.5 0.5 1.7 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain Glyco_hydro_4 PF02056.16 gi|289937512|ref|YP_003482114.1| - 0.019 14.6 0.3 0.054 13.1 0.3 1.8 1 1 0 1 1 1 0 Family 4 glycosyl hydrolase ApbA PF02558.16 gi|289937512|ref|YP_003482114.1| - 0.038 13.7 0.0 0.061 13.0 0.0 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA adh_short_C2 PF13561.6 gi|289937512|ref|YP_003482114.1| - 0.043 13.4 0.4 0.09 12.3 0.4 1.5 1 0 0 1 1 1 0 Enoyl-(Acyl carrier protein) reductase Sacchrp_dh_NADP PF03435.18 gi|289937512|ref|YP_003482114.1| - 0.048 13.9 1.3 0.16 12.3 0.3 2.2 2 1 0 2 2 2 0 Saccharopine dehydrogenase NADP binding domain MORN PF02493.20 gi|289937512|ref|YP_003482114.1| - 0.1 12.6 2.1 0.12 12.3 0.2 2.1 2 0 0 2 2 2 0 MORN repeat Acyl-CoA_dh_1 PF00441.24 gi|289937513|ref|YP_003482115.1| - 6.2e-53 179.0 3.2 8.8e-53 178.5 3.2 1.2 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|289937513|ref|YP_003482115.1| - 8e-32 110.2 0.1 2.2e-31 108.8 0.1 1.8 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.11 gi|289937513|ref|YP_003482115.1| - 1.9e-28 99.4 5.9 3e-28 98.8 5.9 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.19 gi|289937513|ref|YP_003482115.1| - 1.3e-25 89.5 0.1 2.4e-25 88.6 0.1 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain HpaB_N PF11794.8 gi|289937513|ref|YP_003482115.1| - 0.00083 19.1 2.3 0.0041 16.8 1.0 2.5 2 1 0 2 2 2 1 4-hydroxyphenylacetate 3-hydroxylase N terminal HpaB PF03241.13 gi|289937513|ref|YP_003482115.1| - 0.003 16.7 0.8 0.0062 15.6 0.8 1.6 1 1 0 1 1 1 1 4-hydroxyphenylacetate 3-hydroxylase C terminal NMT1_3 PF16868.5 gi|289937514|ref|YP_003482116.1| - 1.1e-12 48.0 0.0 1.3e-12 47.7 0.0 1.1 1 0 0 1 1 1 1 NMT1-like family TAT_signal PF10518.9 gi|289937514|ref|YP_003482116.1| - 0.0009 19.0 0.3 0.0015 18.3 0.3 1.3 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence AIRC PF00731.20 gi|289937514|ref|YP_003482116.1| - 0.093 12.3 0.1 0.16 11.5 0.1 1.3 1 0 0 1 1 1 0 AIR carboxylase DctM PF06808.12 gi|289937515|ref|YP_003482117.1| - 1.4e-55 188.8 51.6 2.4e-55 188.1 51.6 1.3 1 0 0 1 1 1 1 Tripartite ATP-independent periplasmic transporter, DctM component CytB6-F_Fe-S PF08802.10 gi|289937515|ref|YP_003482117.1| - 0.8 9.8 10.1 0.08 13.0 1.4 4.0 2 1 1 3 3 3 0 Cytochrome B6-F complex Fe-S subunit NikR_C PF08753.11 gi|289937516|ref|YP_003482118.1| - 8.8e-19 67.5 0.7 1.4e-18 66.8 0.2 1.5 1 1 1 2 2 2 1 NikR C terminal nickel binding domain RHH_1 PF01402.21 gi|289937516|ref|YP_003482118.1| - 0.00012 21.9 0.0 0.00026 20.8 0.0 1.6 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family VapB_antitoxin PF09957.9 gi|289937516|ref|YP_003482118.1| - 0.075 13.0 0.0 0.31 11.0 0.0 1.9 1 1 0 1 1 1 0 Bacterial antitoxin of type II TA system, VapB TerC PF03741.16 gi|289937517|ref|YP_003482119.1| - 0.00037 20.2 2.8 0.021 14.5 0.0 2.2 2 0 0 2 2 2 2 Integral membrane protein TerC family DsbD PF02683.15 gi|289937517|ref|YP_003482119.1| - 0.0038 17.2 4.7 0.044 13.7 0.9 2.3 2 0 0 2 2 2 2 Cytochrome C biogenesis protein transmembrane region Trp_oprn_chp PF09534.10 gi|289937517|ref|YP_003482119.1| - 0.069 13.0 0.0 0.17 11.7 0.0 2.0 1 1 0 1 1 1 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) TMEM72 PF16054.5 gi|289937517|ref|YP_003482119.1| - 2.2 7.9 5.4 0.81 9.4 0.2 2.6 3 1 0 3 3 3 0 Transmembrane protein family 72 DUF4199 PF13858.6 gi|289937517|ref|YP_003482119.1| - 5.9 7.3 12.1 4.6 7.6 3.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF4199) E1_dh PF00676.20 gi|289937518|ref|YP_003482120.1| - 1.6e-67 227.5 0.0 2.1e-67 227.2 0.0 1.1 1 0 0 1 1 1 1 Dehydrogenase E1 component DXP_synthase_N PF13292.6 gi|289937518|ref|YP_003482120.1| - 3.7e-07 29.6 0.0 7e-07 28.7 0.0 1.4 1 0 0 1 1 1 1 1-deoxy-D-xylulose-5-phosphate synthase TPP_enzyme_C PF02775.21 gi|289937518|ref|YP_003482120.1| - 5.2e-05 23.1 1.3 0.0012 18.7 0.1 3.0 2 1 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DUF4164 PF13747.6 gi|289937518|ref|YP_003482120.1| - 0.0018 18.5 1.0 0.0033 17.7 1.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4164) Transketolase_N PF00456.21 gi|289937518|ref|YP_003482120.1| - 0.0044 16.0 0.1 0.0083 15.1 0.1 1.3 1 1 0 1 1 1 1 Transketolase, thiamine diphosphate binding domain SMP PF04927.12 gi|289937518|ref|YP_003482120.1| - 2.2 8.8 7.5 0.37 11.3 1.2 2.7 2 0 0 2 2 2 0 Seed maturation protein Transket_pyr PF02779.24 gi|289937519|ref|YP_003482121.1| - 3.7e-45 153.8 1.4 6.8e-45 152.9 1.4 1.4 1 0 0 1 1 1 1 Transketolase, pyrimidine binding domain Transketolase_C PF02780.20 gi|289937519|ref|YP_003482121.1| - 3.1e-34 117.5 1.2 5.2e-34 116.8 1.2 1.4 1 0 0 1 1 1 1 Transketolase, C-terminal domain PFOR_II PF17147.4 gi|289937519|ref|YP_003482121.1| - 0.00024 21.4 0.3 0.00061 20.1 0.0 1.8 2 0 0 2 2 2 1 Pyruvate:ferredoxin oxidoreductase core domain II Biotin_lipoyl PF00364.22 gi|289937520|ref|YP_003482122.1| - 8.7e-18 63.9 0.2 1.1e-17 63.6 0.2 1.1 1 0 0 1 1 1 1 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.6 gi|289937520|ref|YP_003482122.1| - 8.2e-08 32.0 0.0 0.012 15.4 0.0 2.1 1 1 1 2 2 2 2 Biotin-lipoyl like GCV_H PF01597.19 gi|289937520|ref|YP_003482122.1| - 0.007 16.3 0.1 0.0079 16.1 0.1 1.2 1 0 0 1 1 1 1 Glycine cleavage H-protein QRPTase_N PF02749.16 gi|289937520|ref|YP_003482122.1| - 0.015 15.4 0.1 0.31 11.1 0.0 2.1 1 1 1 2 2 2 0 Quinolinate phosphoribosyl transferase, N-terminal domain PTS_EIIA_1 PF00358.20 gi|289937520|ref|YP_003482122.1| - 0.016 14.9 0.1 0.24 11.2 0.1 2.0 1 1 1 2 2 2 0 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 RnfC_N PF13375.6 gi|289937520|ref|YP_003482122.1| - 0.022 14.7 0.0 0.027 14.4 0.0 1.2 1 0 0 1 1 1 0 RnfC Barrel sandwich hybrid domain HlyD_D23 PF16576.5 gi|289937520|ref|YP_003482122.1| - 0.032 13.4 0.0 1 8.5 0.0 2.0 1 1 1 2 2 2 0 Barrel-sandwich domain of CusB or HlyD membrane-fusion DUF2118 PF09891.9 gi|289937520|ref|YP_003482122.1| - 0.095 12.7 0.1 0.16 11.9 0.1 1.4 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2118) HlyD_3 PF13437.6 gi|289937520|ref|YP_003482122.1| - 0.098 13.4 0.1 0.29 11.9 0.1 1.7 1 1 1 2 2 2 0 HlyD family secretion protein NQRA PF05896.11 gi|289937520|ref|YP_003482122.1| - 0.11 11.9 0.0 0.11 11.9 0.0 1.1 1 0 0 1 1 1 0 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) 2-oxoacid_dh PF00198.23 gi|289937521|ref|YP_003482123.1| - 6.8e-67 225.3 0.0 8.1e-67 225.1 0.0 1.0 1 0 0 1 1 1 1 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CPSase_L_D2 PF02786.17 gi|289937522|ref|YP_003482124.1| - 1.5e-71 240.2 0.1 2.3e-71 239.7 0.1 1.3 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain Biotin_carb_N PF00289.22 gi|289937522|ref|YP_003482124.1| - 6.9e-44 148.9 0.1 1.7e-43 147.7 0.1 1.7 1 0 0 1 1 1 1 Biotin carboxylase, N-terminal domain Biotin_carb_C PF02785.19 gi|289937522|ref|YP_003482124.1| - 5.4e-40 135.9 0.0 1e-39 134.9 0.0 1.5 1 0 0 1 1 1 1 Biotin carboxylase C-terminal domain ATP-grasp PF02222.22 gi|289937522|ref|YP_003482124.1| - 8.1e-08 32.0 0.2 1.9e-07 30.8 0.1 1.6 2 0 0 2 2 2 1 ATP-grasp domain Dala_Dala_lig_C PF07478.13 gi|289937522|ref|YP_003482124.1| - 1.1e-06 28.3 0.0 3.1e-06 26.9 0.0 1.7 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus GARS_A PF01071.19 gi|289937522|ref|YP_003482124.1| - 1.8e-05 24.6 0.0 3.2e-05 23.8 0.0 1.4 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATP-grasp_3 PF02655.14 gi|289937522|ref|YP_003482124.1| - 0.0013 18.8 0.1 0.005 16.9 0.1 2.0 1 1 0 1 1 1 1 ATP-grasp domain TMP-TENI PF02581.17 gi|289937522|ref|YP_003482124.1| - 0.0042 16.4 0.5 0.52 9.6 0.1 2.3 2 0 0 2 2 2 1 Thiamine monophosphate synthase ATPgrasp_Ter PF15632.6 gi|289937522|ref|YP_003482124.1| - 0.0047 16.7 0.0 0.01 15.6 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_5 PF13549.6 gi|289937522|ref|YP_003482124.1| - 0.017 14.6 0.0 0.033 13.6 0.0 1.4 1 0 0 1 1 1 0 ATP-grasp domain ATPgrasp_ST PF14397.6 gi|289937522|ref|YP_003482124.1| - 0.024 13.9 0.0 0.049 12.9 0.0 1.4 1 0 0 1 1 1 0 Sugar-transfer associated ATP-grasp LAL_C2 PF18603.1 gi|289937522|ref|YP_003482124.1| - 0.053 13.7 0.1 0.28 11.3 0.1 2.3 2 0 0 2 2 2 0 L-amino acid ligase C-terminal domain 2 ATP-grasp_2 PF08442.10 gi|289937522|ref|YP_003482124.1| - 0.12 12.0 0.2 0.2 11.2 0.2 1.3 1 0 0 1 1 1 0 ATP-grasp domain Oxidored_nitro PF00148.19 gi|289937522|ref|YP_003482124.1| - 0.12 11.0 0.1 0.22 10.2 0.1 1.3 1 0 0 1 1 1 0 Nitrogenase component 1 type Oxidoreductase LamB_YcsF PF03746.16 gi|289937523|ref|YP_003482125.1| - 6.5e-89 297.7 0.1 7.3e-89 297.6 0.1 1.0 1 0 0 1 1 1 1 LamB/YcsF family Polysacc_deac_2 PF04748.13 gi|289937523|ref|YP_003482125.1| - 0.0051 16.0 0.0 0.87 8.7 0.0 2.5 3 0 0 3 3 3 2 Divergent polysaccharide deacetylase DZR PF12773.7 gi|289937524|ref|YP_003482126.1| - 0.0039 17.2 0.4 0.0046 16.9 0.4 1.1 1 0 0 1 1 1 1 Double zinc ribbon Pyr_redox_2 PF07992.14 gi|289937525|ref|YP_003482127.1| - 1.1e-20 74.1 0.2 7.8e-15 54.9 0.0 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.6 gi|289937525|ref|YP_003482127.1| - 0.0015 18.5 1.9 1.6 8.7 0.0 3.1 4 0 0 4 4 4 2 FAD-NAD(P)-binding DUF1344 PF07076.11 gi|289937525|ref|YP_003482127.1| - 0.015 15.2 1.2 1.2 9.2 0.2 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1344) Trp_halogenase PF04820.14 gi|289937525|ref|YP_003482127.1| - 0.02 13.8 0.6 0.02 13.8 0.6 2.3 3 0 0 3 3 3 0 Tryptophan halogenase Pribosyltran PF00156.27 gi|289937525|ref|YP_003482127.1| - 0.092 12.3 0.0 0.24 10.9 0.0 1.7 1 0 0 1 1 1 0 Phosphoribosyl transferase domain sCache_3_2 PF17203.4 gi|289937525|ref|YP_003482127.1| - 0.098 12.8 0.4 2.8 8.1 0.1 2.3 2 0 0 2 2 2 0 Single cache domain 3 DUF1641 PF07849.11 gi|289937526|ref|YP_003482128.1| - 8.5e-14 51.1 0.5 2.9e-13 49.5 0.2 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF1641) INCA1 PF15142.6 gi|289937526|ref|YP_003482128.1| - 0.058 13.4 0.0 0.089 12.8 0.0 1.2 1 0 0 1 1 1 0 INCA1 hnRNP_Q_AcD PF18360.1 gi|289937526|ref|YP_003482128.1| - 0.1 12.6 0.9 5.6 7.0 0.1 2.4 1 1 1 2 2 2 0 Heterogeneous nuclear ribonucleoprotein Q acidic domain GatB_Yqey PF02637.18 gi|289937526|ref|YP_003482128.1| - 0.1 12.5 0.0 0.24 11.3 0.0 1.6 1 0 0 1 1 1 0 GatB domain Cyt_bd_oxida_I PF01654.17 gi|289937527|ref|YP_003482129.1| - 2.8e-138 461.1 25.4 3.3e-138 460.8 25.4 1.0 1 0 0 1 1 1 1 Cytochrome bd terminal oxidase subunit I Cyt_bd_oxida_II PF02322.15 gi|289937528|ref|YP_003482130.1| - 2.1e-69 234.2 34.3 2.5e-69 234.0 34.3 1.0 1 0 0 1 1 1 1 Cytochrome bd terminal oxidase subunit II Biotin_lipoyl PF00364.22 gi|289937529|ref|YP_003482131.1| - 3.9e-18 65.0 0.0 4.3e-18 64.9 0.0 1.0 1 0 0 1 1 1 1 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.6 gi|289937529|ref|YP_003482131.1| - 0.00093 19.0 0.0 0.24 11.3 0.0 2.2 2 0 0 2 2 2 2 Biotin-lipoyl like GCV_H PF01597.19 gi|289937529|ref|YP_003482131.1| - 0.0033 17.3 0.1 0.0041 17.0 0.1 1.2 1 0 0 1 1 1 1 Glycine cleavage H-protein RnfC_N PF13375.6 gi|289937529|ref|YP_003482131.1| - 0.019 14.9 0.0 0.023 14.6 0.0 1.2 1 0 0 1 1 1 0 RnfC Barrel sandwich hybrid domain CT_A_B PF02626.15 gi|289937530|ref|YP_003482132.1| - 1.1e-87 294.1 0.6 1.2e-87 293.9 0.6 1.0 1 0 0 1 1 1 1 Carboxyltransferase domain, subdomain A and B CoA_trans PF01144.23 gi|289937530|ref|YP_003482132.1| - 0.022 14.2 0.1 0.044 13.2 0.1 1.5 1 1 0 1 1 1 0 Coenzyme A transferase CT_C_D PF02682.16 gi|289937531|ref|YP_003482133.1| - 2.2e-47 161.4 0.0 2.9e-47 161.1 0.0 1.1 1 0 0 1 1 1 1 Carboxyltransferase domain, subdomain C and D HPPK PF01288.20 gi|289937531|ref|YP_003482133.1| - 0.0095 16.4 0.0 0.015 15.8 0.0 1.4 1 0 0 1 1 1 1 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) ATPase_2 PF01637.18 gi|289937532|ref|YP_003482134.1| - 3.6e-27 95.8 0.0 5.5e-27 95.2 0.0 1.3 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea DUF234 PF03008.14 gi|289937532|ref|YP_003482134.1| - 3.2e-24 85.3 0.0 9.2e-24 83.8 0.0 1.7 2 0 0 2 2 2 1 Archaea bacterial proteins of unknown function AAA_14 PF13173.6 gi|289937532|ref|YP_003482134.1| - 1.7e-10 41.0 0.0 3.9e-10 39.9 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|289937532|ref|YP_003482134.1| - 4.8e-07 30.3 0.0 1.1e-06 29.1 0.0 1.6 1 0 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|289937532|ref|YP_003482134.1| - 2.1e-05 24.8 0.0 5.2e-05 23.5 0.0 1.6 1 0 0 1 1 1 1 AAA domain HTH_IclR PF09339.10 gi|289937532|ref|YP_003482134.1| - 0.014 15.2 0.1 0.028 14.2 0.1 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|289937532|ref|YP_003482134.1| - 0.014 15.2 0.0 0.057 13.3 0.0 2.0 3 0 0 3 3 3 0 Bacterial regulatory protein, arsR family TniB PF05621.11 gi|289937532|ref|YP_003482134.1| - 0.019 14.4 0.0 0.052 13.0 0.0 1.7 1 1 0 1 1 1 0 Bacterial TniB protein HTH_24 PF13412.6 gi|289937532|ref|YP_003482134.1| - 0.046 13.3 0.0 0.085 12.4 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Roc PF08477.13 gi|289937532|ref|YP_003482134.1| - 0.13 12.4 0.0 0.23 11.7 0.0 1.4 1 0 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase Ras PF00071.22 gi|289937532|ref|YP_003482134.1| - 0.2 11.2 0.0 0.37 10.4 0.0 1.4 1 0 0 1 1 1 0 Ras family ABC_tran PF00005.27 gi|289937533|ref|YP_003482135.1| - 2.2e-32 112.5 0.0 3e-32 112.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|289937533|ref|YP_003482135.1| - 6e-20 71.5 0.1 1.3e-19 70.4 0.1 1.6 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_16 PF13191.6 gi|289937533|ref|YP_003482135.1| - 5.2e-05 23.7 0.1 0.0001 22.8 0.1 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA_21 PF13304.6 gi|289937533|ref|YP_003482135.1| - 0.00015 21.7 0.0 0.021 14.6 0.0 2.1 1 1 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|289937533|ref|YP_003482135.1| - 0.00018 21.0 0.1 0.00047 19.7 0.1 1.6 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|289937533|ref|YP_003482135.1| - 0.00038 20.7 0.2 0.0022 18.2 0.2 2.0 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|289937533|ref|YP_003482135.1| - 0.017 15.3 0.0 0.032 14.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|289937533|ref|YP_003482135.1| - 0.049 13.4 0.1 0.091 12.5 0.1 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_25 PF13481.6 gi|289937533|ref|YP_003482135.1| - 0.052 13.1 0.8 0.83 9.2 0.8 2.4 1 1 0 1 1 1 0 AAA domain AAA PF00004.29 gi|289937533|ref|YP_003482135.1| - 0.053 13.9 0.1 0.23 11.9 0.1 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 gi|289937533|ref|YP_003482135.1| - 0.091 12.8 0.2 0.41 10.7 0.1 2.2 1 1 0 2 2 2 0 AAA domain (dynein-related subfamily) AvrPto PF11592.8 gi|289937533|ref|YP_003482135.1| - 0.14 12.2 0.0 0.32 11.0 0.0 1.6 1 0 0 1 1 1 0 Central core of the bacterial effector protein AvrPto Zeta_toxin PF06414.12 gi|289937533|ref|YP_003482135.1| - 0.14 11.4 0.0 0.26 10.5 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin G-alpha PF00503.20 gi|289937533|ref|YP_003482135.1| - 0.18 11.0 0.0 0.21 10.7 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit ABC_tran PF00005.27 gi|289937534|ref|YP_003482136.1| - 1.2e-29 103.6 0.0 1.7e-29 103.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|289937534|ref|YP_003482136.1| - 3.4e-19 69.1 0.4 6.9e-19 68.1 0.4 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|289937534|ref|YP_003482136.1| - 9.2e-06 25.7 0.3 4.3e-05 23.5 0.1 2.0 2 0 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|289937534|ref|YP_003482136.1| - 0.0026 18.0 1.2 0.037 14.3 1.2 2.3 1 1 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 gi|289937534|ref|YP_003482136.1| - 0.049 13.4 0.1 2.9 7.6 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein BPD_transp_1 PF00528.22 gi|289937535|ref|YP_003482137.1| - 2.1e-30 105.8 7.0 2.1e-30 105.8 7.0 1.8 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|289937535|ref|YP_003482137.1| - 5.9e-09 35.8 0.3 5.9e-09 35.8 0.3 3.1 4 0 0 4 4 4 1 N-terminal TM domain of oligopeptide transport permease C DUF1028 PF06267.12 gi|289937536|ref|YP_003482138.1| - 1e-57 195.0 0.0 1.2e-57 194.8 0.0 1.0 1 0 0 1 1 1 1 Family of unknown function (DUF1028) BPD_transp_1 PF00528.22 gi|289937537|ref|YP_003482139.1| - 2.5e-42 144.7 15.9 2.5e-42 144.7 15.9 1.9 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_5 PF00496.22 gi|289937538|ref|YP_003482140.1| - 5.1e-70 236.3 0.2 6.7e-70 235.9 0.2 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle Peptidase_M24 PF00557.24 gi|289937539|ref|YP_003482141.1| - 4.1e-40 137.7 0.1 5.3e-40 137.4 0.1 1.2 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.18 gi|289937539|ref|YP_003482141.1| - 1.5e-12 48.3 0.0 3.6e-12 47.1 0.0 1.6 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain Peptidase_M24 PF00557.24 gi|289937540|ref|YP_003482142.1| - 1.9e-32 112.6 1.2 3.9e-32 111.6 1.0 1.6 1 1 1 2 2 2 1 Metallopeptidase family M24 HTH_10 PF04967.12 gi|289937541|ref|YP_003482143.1| - 2.4e-20 72.1 0.0 4.4e-20 71.2 0.0 1.5 1 0 0 1 1 1 1 HTH DNA binding domain HTH_5 PF01022.20 gi|289937541|ref|YP_003482143.1| - 0.0039 17.0 0.0 0.011 15.5 0.0 1.8 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|289937541|ref|YP_003482143.1| - 0.0059 16.6 0.4 0.057 13.5 0.2 2.7 3 1 1 4 4 4 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|289937541|ref|YP_003482143.1| - 0.054 13.1 0.0 0.12 12.0 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding PsbN PF02468.15 gi|289937541|ref|YP_003482143.1| - 0.089 12.7 0.4 0.22 11.4 0.0 1.8 2 0 0 2 2 2 0 Photosystem II reaction centre N protein (psbN) HTH_psq PF05225.16 gi|289937541|ref|YP_003482143.1| - 0.098 12.4 0.0 0.21 11.4 0.0 1.6 1 0 0 1 1 1 0 helix-turn-helix, Psq domain HTH_Tnp_1_2 PF13022.6 gi|289937541|ref|YP_003482143.1| - 0.15 12.2 0.0 0.27 11.4 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix of insertion element transposase Pro_dh PF01619.18 gi|289937542|ref|YP_003482144.1| - 1.1e-24 87.5 0.0 1.9e-24 86.8 0.0 1.3 1 1 0 1 1 1 1 Proline dehydrogenase Aldedh PF00171.22 gi|289937543|ref|YP_003482145.1| - 4e-144 480.6 0.0 4.6e-144 480.4 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family SPOUT_MTase_2 PF14419.6 gi|289937543|ref|YP_003482145.1| - 0.043 13.2 0.0 0.14 11.5 0.0 1.8 2 0 0 2 2 2 0 AF2226-like SPOUT RNA Methylase fused to THUMP OmdA PF13376.6 gi|289937543|ref|YP_003482145.1| - 0.044 13.8 0.7 0.084 12.9 0.7 1.4 1 0 0 1 1 1 0 Bacteriocin-protection, YdeI or OmpD-Associated IclR PF01614.18 gi|289937544|ref|YP_003482146.1| - 4.8e-27 94.3 0.0 2.2e-26 92.2 0.0 1.9 2 0 0 2 2 2 1 Bacterial transcriptional regulator HTH_IclR PF09339.10 gi|289937544|ref|YP_003482146.1| - 5.2e-12 45.4 0.0 1e-10 41.3 0.0 2.7 3 0 0 3 3 3 1 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|289937544|ref|YP_003482146.1| - 3.9e-09 35.9 1.0 2.1e-08 33.6 0.0 2.5 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|289937544|ref|YP_003482146.1| - 2e-05 24.4 0.0 0.00045 20.0 0.0 2.8 3 0 0 3 3 3 1 MarR family HTH_5 PF01022.20 gi|289937544|ref|YP_003482146.1| - 8.8e-05 22.3 0.1 0.00034 20.4 0.1 2.1 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|289937544|ref|YP_003482146.1| - 0.00013 21.9 0.3 0.001 19.1 0.1 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_40 PF14493.6 gi|289937544|ref|YP_003482146.1| - 0.0002 21.7 0.1 0.00063 20.1 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain RNA_lig_T4_1 PF09511.10 gi|289937544|ref|YP_003482146.1| - 0.00027 20.9 0.1 0.00045 20.2 0.1 1.4 1 0 0 1 1 1 1 RNA ligase B-block_TFIIIC PF04182.12 gi|289937544|ref|YP_003482146.1| - 0.0016 18.6 0.0 0.0031 17.6 0.0 1.4 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC HTH_11 PF08279.12 gi|289937544|ref|YP_003482146.1| - 0.0025 17.7 0.1 0.046 13.7 0.0 2.6 2 0 0 2 2 2 1 HTH domain HTH_27 PF13463.6 gi|289937544|ref|YP_003482146.1| - 0.0034 17.8 0.0 0.0093 16.4 0.0 1.7 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR PF01047.22 gi|289937544|ref|YP_003482146.1| - 0.0035 17.2 0.1 0.0096 15.8 0.1 1.7 1 0 0 1 1 1 1 MarR family HTH_9 PF08221.11 gi|289937544|ref|YP_003482146.1| - 0.0078 16.3 0.0 0.03 14.4 0.0 2.0 2 0 0 2 2 2 1 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_10 PF04967.12 gi|289937544|ref|YP_003482146.1| - 0.022 14.5 0.2 0.074 12.9 0.0 2.0 2 0 0 2 2 2 0 HTH DNA binding domain SpoIIID PF12116.8 gi|289937544|ref|YP_003482146.1| - 0.025 14.7 0.1 0.079 13.1 0.0 1.8 2 0 0 2 2 1 0 Stage III sporulation protein D HTH_34 PF13601.6 gi|289937544|ref|YP_003482146.1| - 0.046 13.9 0.1 0.18 12.0 0.0 2.0 1 1 1 2 2 2 0 Winged helix DNA-binding domain RepL PF05732.11 gi|289937544|ref|YP_003482146.1| - 0.083 12.3 0.1 0.16 11.4 0.1 1.4 1 1 0 1 1 1 0 Firmicute plasmid replication protein (RepL) HTH_45 PF14947.6 gi|289937544|ref|YP_003482146.1| - 0.11 12.5 0.0 0.23 11.5 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix TrmB PF01978.19 gi|289937544|ref|YP_003482146.1| - 0.13 12.1 0.0 0.93 9.4 0.0 2.2 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB LexA_DNA_bind PF01726.16 gi|289937544|ref|YP_003482146.1| - 0.16 11.8 0.0 0.45 10.3 0.0 1.7 1 0 0 1 1 1 0 LexA DNA binding domain M20_dimer PF07687.14 gi|289937546|ref|YP_003482148.1| - 5.5e-09 35.9 0.0 1.6e-08 34.5 0.0 1.7 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M20 PF01546.28 gi|289937546|ref|YP_003482148.1| - 1.7e-07 31.1 0.0 2.6e-07 30.5 0.0 1.4 1 1 0 1 1 1 1 Peptidase family M20/M25/M40 DUF2627 PF11118.8 gi|289937548|ref|YP_003482150.1| - 0.87 10.2 4.6 0.48 11.0 2.2 1.9 2 1 0 2 2 2 0 Protein of unknown function (DUF2627) DUF2070 PF09843.9 gi|289937548|ref|YP_003482150.1| - 9.9 4.3 8.3 11 4.1 8.3 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) YscJ_FliF PF01514.17 gi|289937549|ref|YP_003482151.1| - 0.03 14.0 0.0 0.032 13.9 0.0 1.1 1 0 0 1 1 1 0 Secretory protein of YscJ/FliF family Secretin_N PF03958.17 gi|289937549|ref|YP_003482151.1| - 0.096 13.1 0.0 0.15 12.4 0.0 1.3 1 0 0 1 1 1 0 Bacterial type II/III secretion system short domain HATPase_c PF02518.26 gi|289937550|ref|YP_003482152.1| - 4.4e-28 98.0 0.0 9.3e-28 97.0 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.12 gi|289937550|ref|YP_003482152.1| - 1.1e-19 70.5 7.7 3.6e-16 59.2 0.2 4.6 4 0 0 4 4 4 2 PAS fold PAS_4 PF08448.10 gi|289937550|ref|YP_003482152.1| - 2.9e-18 66.1 0.3 8.5e-11 42.1 0.0 2.8 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.7 gi|289937550|ref|YP_003482152.1| - 5.9e-13 49.0 0.0 4.1e-05 23.8 0.0 2.6 2 0 0 2 2 2 2 PAS domain GAF PF01590.26 gi|289937550|ref|YP_003482152.1| - 3.2e-11 44.0 0.0 7.6e-11 42.8 0.0 1.7 1 0 0 1 1 1 1 GAF domain GAF_3 PF13492.6 gi|289937550|ref|YP_003482152.1| - 1.1e-10 42.0 0.0 2.1e-10 41.1 0.0 1.5 1 0 0 1 1 1 1 GAF domain HisKA PF00512.25 gi|289937550|ref|YP_003482152.1| - 2.1e-10 40.5 0.1 7.2e-10 38.8 0.1 2.0 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS PF00989.25 gi|289937550|ref|YP_003482152.1| - 1.6e-09 37.8 1.2 0.00061 19.8 0.0 2.8 3 0 0 3 3 3 2 PAS fold GAF_2 PF13185.6 gi|289937550|ref|YP_003482152.1| - 6.7e-08 32.9 0.1 1.6e-07 31.7 0.1 1.7 1 0 0 1 1 1 1 GAF domain HATPase_c_5 PF14501.6 gi|289937550|ref|YP_003482152.1| - 0.00058 19.7 0.0 0.0013 18.6 0.0 1.5 1 0 0 1 1 1 1 GHKL domain HATPase_c_2 PF13581.6 gi|289937550|ref|YP_003482152.1| - 0.006 16.5 0.0 0.015 15.2 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain YqzH PF14164.6 gi|289937550|ref|YP_003482152.1| - 0.1 12.7 0.0 2.1 8.5 0.0 2.5 2 0 0 2 2 2 0 YqzH-like protein Amidohydro_2 PF04909.14 gi|289937553|ref|YP_003482155.1| - 3.4e-20 73.0 9.7 3.4e-20 73.0 9.7 1.9 2 1 0 2 2 2 1 Amidohydrolase Nop14 PF04147.12 gi|289937553|ref|YP_003482155.1| - 0.015 13.6 29.5 0.018 13.3 29.5 1.0 1 0 0 1 1 1 0 Nop14-like family SpoIIIAH PF12685.7 gi|289937553|ref|YP_003482155.1| - 1.1 9.1 13.3 1.6 8.5 13.3 1.3 1 0 0 1 1 1 0 SpoIIIAH-like protein SDA1 PF05285.12 gi|289937553|ref|YP_003482155.1| - 1.9 7.8 35.6 2.5 7.4 35.6 1.1 1 0 0 1 1 1 0 SDA1 Cad PF03596.13 gi|289937554|ref|YP_003482156.1| - 1.2e-13 51.4 8.3 1.5e-13 51.1 8.3 1.1 1 0 0 1 1 1 1 Cadmium resistance transporter EamA PF00892.20 gi|289937555|ref|YP_003482157.1| - 5.7e-17 62.2 19.0 6.3e-17 62.0 19.0 1.0 1 0 0 1 1 1 1 EamA-like transporter family ABC2_membrane_2 PF12679.7 gi|289937557|ref|YP_003482159.1| - 8.1e-32 110.6 17.5 1.6e-30 106.4 17.5 2.0 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|289937557|ref|YP_003482159.1| - 1.9e-06 27.3 21.2 1.9e-06 27.2 20.3 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|289937557|ref|YP_003482159.1| - 2e-05 24.6 11.7 2e-05 24.6 11.7 2.0 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|289937557|ref|YP_003482159.1| - 3.7 7.0 18.3 1.1 8.7 13.8 2.3 2 1 0 2 2 2 0 ABC-2 family transporter protein ABC_tran PF00005.27 gi|289937558|ref|YP_003482160.1| - 5.2e-32 111.2 0.0 1.2e-31 110.1 0.0 1.6 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|289937558|ref|YP_003482160.1| - 6.2e-12 45.9 0.1 3e-08 33.8 0.0 2.3 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|289937558|ref|YP_003482160.1| - 8.1e-08 32.9 0.2 2e-07 31.6 0.2 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) 3HCDH_N PF02737.18 gi|289937558|ref|YP_003482160.1| - 0.0071 16.2 0.5 0.013 15.3 0.5 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AAA_16 PF13191.6 gi|289937558|ref|YP_003482160.1| - 0.0075 16.7 1.1 0.1 13.0 1.1 2.1 1 1 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.6 gi|289937558|ref|YP_003482160.1| - 0.008 16.7 0.3 0.087 13.3 0.0 2.1 2 0 0 2 2 2 1 AAA domain SbcCD_C PF13558.6 gi|289937558|ref|YP_003482160.1| - 0.013 15.7 0.0 0.18 12.1 0.0 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_22 PF13401.6 gi|289937558|ref|YP_003482160.1| - 0.02 15.2 0.1 0.1 12.9 0.1 2.0 1 1 0 1 1 1 0 AAA domain ClpB_D2-small PF10431.9 gi|289937558|ref|YP_003482160.1| - 0.049 13.7 0.0 13 5.9 0.0 2.5 2 0 0 2 2 2 0 C-terminal, D2-small domain, of ClpB protein AAA_30 PF13604.6 gi|289937558|ref|YP_003482160.1| - 0.053 13.2 0.1 0.4 10.4 0.1 2.2 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|289937558|ref|YP_003482160.1| - 0.095 12.5 0.0 0.22 11.3 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain SMC_N PF02463.19 gi|289937558|ref|YP_003482160.1| - 0.12 11.8 0.0 9.7 5.6 0.0 2.5 2 1 0 2 2 2 0 RecF/RecN/SMC N terminal domain HTH_20 PF12840.7 gi|289937560|ref|YP_003482162.1| - 2e-13 50.2 0.0 3.1e-13 49.6 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|289937560|ref|YP_003482162.1| - 2.2e-08 33.9 0.0 4.9e-07 29.5 0.0 2.2 2 0 0 2 2 2 1 MarR family HTH_5 PF01022.20 gi|289937560|ref|YP_003482162.1| - 2e-07 30.8 0.0 3.2e-07 30.1 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|289937560|ref|YP_003482162.1| - 1.3e-06 27.9 0.0 1.9e-06 27.3 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|289937560|ref|YP_003482162.1| - 0.00017 21.4 0.0 0.00027 20.8 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB DprA_WH PF17782.1 gi|289937560|ref|YP_003482162.1| - 0.0018 18.4 0.6 0.0056 16.8 0.6 1.9 1 1 0 1 1 1 1 DprA winged helix domain HTH_11 PF08279.12 gi|289937560|ref|YP_003482162.1| - 0.014 15.3 0.0 0.021 14.8 0.0 1.3 1 0 0 1 1 1 0 HTH domain HTH_Crp_2 PF13545.6 gi|289937560|ref|YP_003482162.1| - 0.022 14.7 0.0 0.035 14.1 0.0 1.3 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain MarR PF01047.22 gi|289937560|ref|YP_003482162.1| - 0.024 14.6 0.0 0.041 13.8 0.0 1.4 1 0 0 1 1 1 0 MarR family HTH_27 PF13463.6 gi|289937560|ref|YP_003482162.1| - 0.053 14.0 0.0 0.089 13.3 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain Sigma70_r4 PF04545.16 gi|289937560|ref|YP_003482162.1| - 0.087 12.4 0.0 0.15 11.6 0.0 1.3 1 0 0 1 1 1 0 Sigma-70, region 4 Bot1p PF12298.8 gi|289937560|ref|YP_003482162.1| - 0.13 12.4 0.0 0.24 11.5 0.0 1.4 1 0 0 1 1 1 0 Eukaryotic mitochondrial regulator protein Dimerisation2 PF16864.5 gi|289937560|ref|YP_003482162.1| - 0.15 12.1 0.0 0.23 11.4 0.0 1.3 1 0 0 1 1 1 0 Dimerisation domain GerE PF00196.19 gi|289937560|ref|YP_003482162.1| - 0.15 11.6 0.0 0.26 10.8 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family RP-C PF03428.13 gi|289937560|ref|YP_003482162.1| - 0.21 11.2 0.0 0.27 10.9 0.0 1.2 1 0 0 1 1 1 0 Replication protein C N-terminal domain Cad PF03596.13 gi|289937561|ref|YP_003482163.1| - 2.7e-11 43.7 5.4 4.4e-11 43.0 5.4 1.4 1 0 0 1 1 1 1 Cadmium resistance transporter OrfB_IS605 PF01385.19 gi|289937562|ref|YP_003482164.1| - 1.4e-29 102.8 0.0 2.4e-29 102.0 0.0 1.4 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.11 gi|289937562|ref|YP_003482164.1| - 7.1e-18 64.3 0.2 1.5e-17 63.3 0.2 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain UDPG_MGDP_dh PF00984.19 gi|289937562|ref|YP_003482164.1| - 0.05 13.8 0.0 0.11 12.8 0.0 1.5 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, central domain DHH PF01368.20 gi|289937563|ref|YP_003482165.1| - 1.2e-29 102.5 0.0 2.4e-29 101.6 0.0 1.5 1 0 0 1 1 1 1 DHH family DHHA2 PF02833.14 gi|289937563|ref|YP_003482165.1| - 6.2e-18 65.4 0.1 8.7e-18 64.9 0.1 1.2 1 0 0 1 1 1 1 DHHA2 domain CPBP PF02517.16 gi|289937564|ref|YP_003482166.1| - 4.1e-13 49.5 5.8 4.1e-13 49.5 5.8 2.8 2 1 0 3 3 3 1 CPBP intramembrane metalloprotease NAD_binding_2 PF03446.15 gi|289937565|ref|YP_003482167.1| - 2.2e-16 60.4 0.0 3.1e-16 59.9 0.0 1.1 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 gi|289937565|ref|YP_003482167.1| - 2.7e-08 34.3 0.1 4.5e-08 33.6 0.1 1.3 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Shikimate_DH PF01488.20 gi|289937565|ref|YP_003482167.1| - 7.4e-07 29.3 0.0 1.2e-06 28.6 0.0 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase 2-Hacid_dh_C PF02826.19 gi|289937565|ref|YP_003482167.1| - 7.8e-05 22.1 0.0 0.00011 21.6 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ApbA PF02558.16 gi|289937565|ref|YP_003482167.1| - 8.1e-05 22.3 0.0 0.00012 21.8 0.0 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_Gly3P_dh_N PF01210.23 gi|289937565|ref|YP_003482167.1| - 0.00079 19.4 0.2 0.0016 18.4 0.2 1.6 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Sacchrp_dh_NADP PF03435.18 gi|289937565|ref|YP_003482167.1| - 0.00092 19.5 0.0 0.0021 18.3 0.0 1.7 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain 3HCDH_N PF02737.18 gi|289937565|ref|YP_003482167.1| - 0.0079 16.1 0.0 0.022 14.6 0.0 1.8 1 1 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TrkA_N PF02254.18 gi|289937565|ref|YP_003482167.1| - 0.009 16.3 0.0 0.018 15.3 0.0 1.5 1 0 0 1 1 1 1 TrkA-N domain IlvN PF07991.12 gi|289937565|ref|YP_003482167.1| - 0.04 13.5 0.0 0.055 13.0 0.0 1.2 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain MASE2 PF05230.11 gi|289937566|ref|YP_003482168.1| - 0.018 15.1 0.2 0.021 14.9 0.2 1.1 1 0 0 1 1 1 0 MASE2 domain DUF202 PF02656.15 gi|289937566|ref|YP_003482168.1| - 0.063 13.7 1.4 0.11 12.9 1.4 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF202) TrmO PF01980.16 gi|289937567|ref|YP_003482169.1| - 1.4e-37 128.5 0.0 1.8e-37 128.2 0.0 1.1 1 0 0 1 1 1 1 tRNA-methyltransferase O RPE65 PF03055.15 gi|289937568|ref|YP_003482170.1| - 9e-112 374.6 0.0 1e-111 374.4 0.0 1.0 1 0 0 1 1 1 1 Retinal pigment epithelial membrane protein DUF2080 PF09853.9 gi|289937569|ref|YP_003482171.1| - 3.8e-06 26.5 0.0 4.4e-06 26.3 0.0 1.1 1 0 0 1 1 1 1 Putative transposon-encoded protein (DUF2080) BPA_C PF18040.1 gi|289937569|ref|YP_003482171.1| - 0.092 12.7 0.0 0.15 12.0 0.0 1.5 1 1 0 1 1 1 0 beta porphyranase A C-terminal OrfB_Zn_ribbon PF07282.11 gi|289937570|ref|YP_003482172.1| - 4e-22 77.9 0.5 8.5e-22 76.9 0.5 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain C1_2 PF03107.16 gi|289937570|ref|YP_003482172.1| - 0.09 13.1 0.6 0.26 11.6 0.6 1.8 1 0 0 1 1 1 0 C1 domain zf-HC5HC2H_2 PF13832.6 gi|289937570|ref|YP_003482172.1| - 0.11 12.7 1.5 0.46 10.7 0.5 2.2 2 0 0 2 2 2 0 PHD-zinc-finger like domain OrfB_IS605 PF01385.19 gi|289937570|ref|YP_003482172.1| - 0.11 12.7 0.0 0.29 11.3 0.0 1.7 1 0 0 1 1 1 0 Probable transposase Fer2 PF00111.27 gi|289937571|ref|YP_003482173.1| - 2.4e-08 33.8 0.6 3.2e-08 33.4 0.6 1.3 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_4 PF13510.6 gi|289937571|ref|YP_003482173.1| - 0.0019 18.2 1.7 0.023 14.7 1.7 2.2 1 1 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_3 PF13085.6 gi|289937571|ref|YP_003482173.1| - 0.13 12.3 0.5 0.18 11.8 0.5 1.4 1 1 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain Sacchrp_dh_NADP PF03435.18 gi|289937572|ref|YP_003482174.1| - 3e-09 37.2 0.0 4.7e-09 36.6 0.0 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain NAD_binding_10 PF13460.6 gi|289937572|ref|YP_003482174.1| - 0.00079 19.4 0.0 0.0013 18.6 0.0 1.4 1 0 0 1 1 1 1 NAD(P)H-binding Pyridox_ox_2 PF12900.7 gi|289937573|ref|YP_003482175.1| - 2.2e-19 69.9 0.0 2.5e-19 69.7 0.0 1.0 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Putative_PNPOx PF01243.20 gi|289937573|ref|YP_003482175.1| - 0.0049 17.0 0.0 0.0069 16.6 0.0 1.3 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase HTH_24 PF13412.6 gi|289937574|ref|YP_003482176.1| - 9.7e-07 28.2 0.0 1.6e-06 27.6 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|289937574|ref|YP_003482176.1| - 0.0012 18.7 0.0 0.0017 18.2 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|289937574|ref|YP_003482176.1| - 0.005 16.7 0.0 0.0068 16.3 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB DUF2250 PF10007.9 gi|289937574|ref|YP_003482176.1| - 0.0053 16.8 0.0 0.0094 16.0 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) MarR_2 PF12802.7 gi|289937574|ref|YP_003482176.1| - 0.036 14.0 0.0 0.051 13.5 0.0 1.2 1 0 0 1 1 1 0 MarR family HTH_45 PF14947.6 gi|289937574|ref|YP_003482176.1| - 0.062 13.3 0.0 0.077 13.0 0.0 1.1 1 0 0 1 1 1 0 Winged helix-turn-helix B-block_TFIIIC PF04182.12 gi|289937574|ref|YP_003482176.1| - 0.094 12.9 0.0 0.17 12.1 0.0 1.6 1 1 0 1 1 1 0 B-block binding subunit of TFIIIC RelB_N PF18506.1 gi|289937574|ref|YP_003482176.1| - 0.12 12.2 0.6 2.1 8.2 0.0 2.8 3 0 0 3 3 3 0 RelB Antitoxin alpha helical domain HTH_36 PF13730.6 gi|289937574|ref|YP_003482176.1| - 0.16 11.9 0.0 0.3 11.1 0.0 1.5 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_20 PF12840.7 gi|289937574|ref|YP_003482176.1| - 0.17 12.0 0.0 0.23 11.6 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|289937574|ref|YP_003482176.1| - 0.18 11.7 0.0 0.29 11.0 0.0 1.4 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain RtcB PF01139.17 gi|289937577|ref|YP_003482179.1| - 3.2e-56 191.3 0.0 2.7e-28 99.3 0.0 2.3 2 0 0 2 2 2 2 tRNA-splicing ligase RtcB NAD_binding_4 PF07993.12 gi|289937578|ref|YP_003482180.1| - 1e-43 149.3 0.0 1.3e-43 149.0 0.0 1.1 1 0 0 1 1 1 1 Male sterility protein Epimerase PF01370.21 gi|289937578|ref|YP_003482180.1| - 1.1e-18 67.5 0.0 1.3e-18 67.3 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|289937578|ref|YP_003482180.1| - 7.4e-14 51.4 0.0 1.6e-13 50.3 0.0 1.5 2 0 0 2 2 2 1 3-beta hydroxysteroid dehydrogenase/isomerase family GDP_Man_Dehyd PF16363.5 gi|289937578|ref|YP_003482180.1| - 1.1e-09 38.1 0.0 1.5e-09 37.8 0.0 1.1 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase RmlD_sub_bind PF04321.17 gi|289937578|ref|YP_003482180.1| - 8.6e-07 28.3 0.1 2.8e-06 26.6 0.1 1.7 1 1 0 1 1 1 1 RmlD substrate binding domain NAD_binding_10 PF13460.6 gi|289937578|ref|YP_003482180.1| - 5.3e-05 23.2 0.1 0.00052 20.0 0.1 2.1 1 1 0 1 1 1 1 NAD(P)H-binding Polysacc_synt_2 PF02719.15 gi|289937578|ref|YP_003482180.1| - 0.0058 15.8 0.0 0.009 15.2 0.0 1.2 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein KR PF08659.10 gi|289937578|ref|YP_003482180.1| - 0.16 11.8 0.0 0.66 9.9 0.0 1.9 1 1 0 1 1 1 0 KR domain Aldedh PF00171.22 gi|289937579|ref|YP_003482181.1| - 5.1e-149 496.7 0.0 5.9e-149 496.5 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.14 gi|289937579|ref|YP_003482181.1| - 0.00014 21.0 0.0 0.00023 20.3 0.0 1.2 1 0 0 1 1 1 1 Acyl-CoA reductase (LuxC) CARDB PF07705.11 gi|289937580|ref|YP_003482182.1| - 9.6e-23 80.4 47.8 3.2e-06 27.3 5.0 5.6 5 0 0 5 5 5 4 CARDB Glug PF07581.12 gi|289937580|ref|YP_003482182.1| - 5e-09 36.0 58.5 0.0057 17.0 0.1 9.6 9 0 0 9 9 9 5 The GLUG motif WIF PF02019.18 gi|289937580|ref|YP_003482182.1| - 0.002 17.8 0.2 7.6 6.2 0.0 3.8 4 0 0 4 4 4 2 WIF domain Alpha_adaptinC2 PF02883.20 gi|289937580|ref|YP_003482182.1| - 0.019 15.2 0.6 0.072 13.4 0.1 2.3 2 0 0 2 2 2 0 Adaptin C-terminal domain 4HBT PF03061.22 gi|289937580|ref|YP_003482182.1| - 0.043 14.2 0.0 50 4.4 0.0 4.1 4 0 0 4 4 4 0 Thioesterase superfamily Gryzun PF07919.12 gi|289937580|ref|YP_003482182.1| - 0.48 9.1 18.1 0.39 9.4 0.4 3.6 1 1 3 4 4 4 0 Gryzun, putative trafficking through Golgi PAS_4 PF08448.10 gi|289937582|ref|YP_003482184.1| - 1.8e-50 169.8 3.7 1.8e-12 47.5 0.1 4.8 4 0 0 4 4 4 4 PAS fold HATPase_c PF02518.26 gi|289937582|ref|YP_003482184.1| - 1.8e-27 96.0 0.0 7.4e-27 94.1 0.0 2.1 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.25 gi|289937582|ref|YP_003482184.1| - 9.3e-23 80.4 0.1 3.3e-09 36.7 0.0 4.9 4 1 0 4 4 4 4 PAS fold PAS_9 PF13426.7 gi|289937582|ref|YP_003482184.1| - 1.5e-22 79.8 1.2 4.6e-11 42.9 0.0 5.0 5 0 0 5 5 5 3 PAS domain PAS_10 PF13596.6 gi|289937582|ref|YP_003482184.1| - 9.7e-16 58.3 0.1 0.047 14.3 0.0 5.0 4 1 0 4 4 4 4 PAS domain PAS_8 PF13188.7 gi|289937582|ref|YP_003482184.1| - 6.5e-15 54.8 0.3 2.5e-06 27.4 0.0 4.7 4 0 0 4 4 4 2 PAS domain HisKA PF00512.25 gi|289937582|ref|YP_003482184.1| - 7e-11 42.0 3.1 1.6e-10 40.9 0.0 3.2 4 0 0 4 4 3 1 His Kinase A (phospho-acceptor) domain PAS_3 PF08447.12 gi|289937582|ref|YP_003482184.1| - 1.4e-09 38.1 0.3 0.021 15.1 0.0 4.9 4 1 0 4 4 4 2 PAS fold PAS_7 PF12860.7 gi|289937582|ref|YP_003482184.1| - 8.5e-07 29.1 0.4 0.036 14.2 0.0 4.9 4 2 0 4 4 4 2 PAS fold HATPase_c_5 PF14501.6 gi|289937582|ref|YP_003482184.1| - 2.4e-05 24.1 0.0 5.6e-05 23.0 0.0 1.6 1 0 0 1 1 1 1 GHKL domain HATPase_c_2 PF13581.6 gi|289937582|ref|YP_003482184.1| - 0.00055 19.9 0.1 0.0015 18.4 0.1 1.8 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HTH_20 PF12840.7 gi|289937582|ref|YP_003482184.1| - 0.016 15.3 0.1 0.044 13.8 0.1 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain dCache_1 PF02743.18 gi|289937582|ref|YP_003482184.1| - 0.018 14.8 3.7 0.14 11.9 0.2 3.4 2 1 1 4 4 4 0 Cache domain Cache_3-Cache_2 PF17201.4 gi|289937582|ref|YP_003482184.1| - 0.032 13.5 0.0 0.13 11.5 0.0 2.0 2 0 0 2 2 2 0 Cache 3/Cache 2 fusion domain sCache_3_3 PF17202.4 gi|289937582|ref|YP_003482184.1| - 0.043 14.2 0.0 0.74 10.3 0.0 2.6 2 0 0 2 2 2 0 Single cache domain 3 TrmB PF01978.19 gi|289937582|ref|YP_003482184.1| - 0.048 13.6 0.0 0.15 11.9 0.0 1.9 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB sCache_like PF16736.5 gi|289937582|ref|YP_003482184.1| - 0.099 12.7 1.4 0.35 11.0 0.0 2.5 3 0 0 3 3 3 0 Single Cache-like HTH_IclR PF09339.10 gi|289937582|ref|YP_003482184.1| - 0.1 12.4 0.1 0.21 11.4 0.1 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain AHSP PF09236.10 gi|289937582|ref|YP_003482184.1| - 0.12 12.8 0.8 24 5.4 0.1 2.9 2 0 0 2 2 2 0 Alpha-haemoglobin stabilising protein Lactamase_B PF00753.27 gi|289937583|ref|YP_003482185.1| - 1.9e-09 37.8 11.3 5.3e-09 36.4 11.3 1.8 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|289937583|ref|YP_003482185.1| - 2.3e-06 27.3 1.2 3.5e-06 26.7 1.2 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain SpoIIIAH PF12685.7 gi|289937583|ref|YP_003482185.1| - 0.00048 20.0 0.2 0.00048 20.0 0.2 1.8 2 0 0 2 2 2 1 SpoIIIAH-like protein Podoplanin PF05808.11 gi|289937583|ref|YP_003482185.1| - 0.13 12.4 1.4 0.35 11.0 1.4 1.8 1 0 0 1 1 1 0 Podoplanin TRAP_alpha PF03896.16 gi|289937583|ref|YP_003482185.1| - 5.6 6.1 10.5 0.26 10.5 4.1 1.9 2 0 0 2 2 2 0 Translocon-associated protein (TRAP), alpha subunit LPAM_1 PF08139.12 gi|289937583|ref|YP_003482185.1| - 8.2 7.1 5.3 19 6.0 5.3 1.6 1 1 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site DUF3006 PF11213.8 gi|289937584|ref|YP_003482186.1| - 3.7e-15 55.9 1.3 4.2e-15 55.7 1.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3006) OrfB_Zn_ribbon PF07282.11 gi|289937585|ref|YP_003482187.1| - 1.3e-22 79.4 0.3 3.7e-22 78.0 0.3 1.8 1 0 0 1 1 1 1 Putative transposase DNA-binding domain C1_2 PF03107.16 gi|289937585|ref|YP_003482187.1| - 0.13 12.6 1.9 0.34 11.3 0.2 2.3 2 0 0 2 2 2 0 C1 domain Y1_Tnp PF01797.16 gi|289937586|ref|YP_003482188.1| - 7.8e-36 122.8 0.6 8.9e-36 122.7 0.6 1.0 1 0 0 1 1 1 1 Transposase IS200 like ABC2_membrane PF01061.24 gi|289937587|ref|YP_003482189.1| - 2.8e-32 111.9 14.6 2.8e-32 111.9 14.6 1.4 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|289937587|ref|YP_003482189.1| - 1.1e-17 64.1 15.3 1.1e-17 64.1 15.3 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein Fusion_gly PF00523.18 gi|289937587|ref|YP_003482189.1| - 0.055 11.7 0.1 0.055 11.7 0.1 1.5 2 0 0 2 2 2 0 Fusion glycoprotein F0 ABC2_membrane_2 PF12679.7 gi|289937587|ref|YP_003482189.1| - 0.14 11.5 21.7 0.42 9.9 21.7 1.7 1 1 0 1 1 1 0 ABC-2 family transporter protein ABC_tran PF00005.27 gi|289937588|ref|YP_003482190.1| - 1.7e-29 103.1 0.0 2.9e-29 102.3 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|289937588|ref|YP_003482190.1| - 3.4e-15 56.7 0.0 3.3e-09 37.0 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|289937588|ref|YP_003482190.1| - 2.4e-09 37.8 0.0 7.3e-09 36.2 0.0 1.9 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) SMC_N PF02463.19 gi|289937588|ref|YP_003482190.1| - 1.1e-05 25.0 0.0 0.00016 21.2 0.0 2.5 2 1 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|289937588|ref|YP_003482190.1| - 0.00068 19.3 0.0 0.0015 18.3 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|289937588|ref|YP_003482190.1| - 0.00073 20.1 0.1 0.0012 19.3 0.1 1.5 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|289937588|ref|YP_003482190.1| - 0.00099 18.9 0.0 0.13 11.9 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA PF00004.29 gi|289937588|ref|YP_003482190.1| - 0.0018 18.7 0.0 0.016 15.7 0.0 2.4 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|289937588|ref|YP_003482190.1| - 0.0068 16.8 0.3 0.023 15.1 0.3 2.0 1 1 0 1 1 1 1 AAA ATPase domain Rad17 PF03215.15 gi|289937588|ref|YP_003482190.1| - 0.011 15.6 0.0 0.017 15.1 0.0 1.2 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_5 PF07728.14 gi|289937588|ref|YP_003482190.1| - 0.026 14.5 0.0 0.18 11.8 0.0 2.1 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_7 PF12775.7 gi|289937588|ref|YP_003482190.1| - 0.058 12.9 0.0 0.092 12.2 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region DUF4175 PF13779.6 gi|289937588|ref|YP_003482190.1| - 0.063 11.2 0.0 0.089 10.7 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4175) AAA_30 PF13604.6 gi|289937588|ref|YP_003482190.1| - 0.076 12.7 0.0 0.16 11.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain SRP54 PF00448.22 gi|289937588|ref|YP_003482190.1| - 0.1 12.2 0.0 0.21 11.2 0.0 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_22 PF13401.6 gi|289937588|ref|YP_003482190.1| - 0.11 12.8 0.1 0.62 10.3 0.1 2.2 1 1 0 1 1 1 0 AAA domain Thymidylate_kin PF02223.17 gi|289937588|ref|YP_003482190.1| - 0.12 12.0 0.0 0.48 10.1 0.0 1.9 2 0 0 2 2 2 0 Thymidylate kinase Mg_chelatase PF01078.21 gi|289937588|ref|YP_003482190.1| - 0.15 11.5 0.0 0.26 10.6 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_33 PF13671.6 gi|289937588|ref|YP_003482190.1| - 0.2 11.8 0.5 0.87 9.7 0.5 2.3 1 1 0 1 1 1 0 AAA domain HTH_10 PF04967.12 gi|289937589|ref|YP_003482191.1| - 4.1e-21 74.5 0.8 7.9e-21 73.6 0.4 1.7 2 0 0 2 2 2 1 HTH DNA binding domain DALR_1 PF05746.15 gi|289937589|ref|YP_003482191.1| - 0.16 12.1 0.1 24 5.1 0.0 2.3 2 0 0 2 2 2 0 DALR anticodon binding domain Rhodanese PF00581.20 gi|289937590|ref|YP_003482192.1| - 4.5e-14 52.9 0.0 1e-13 51.8 0.0 1.6 1 0 0 1 1 1 1 Rhodanese-like domain Lactamase_B PF00753.27 gi|289937590|ref|YP_003482192.1| - 4.3e-10 39.9 13.6 1.1e-09 38.6 11.4 2.4 2 1 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|289937590|ref|YP_003482192.1| - 0.0011 18.5 1.0 0.0026 17.3 1.0 1.6 1 0 0 1 1 1 1 Beta-lactamase superfamily domain MFS_1 PF07690.16 gi|289937591|ref|YP_003482193.1| - 2.2e-40 138.7 33.2 2.2e-20 72.9 17.4 2.0 2 0 0 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|289937591|ref|YP_003482193.1| - 1.5e-15 57.1 18.1 2e-09 36.8 6.7 2.2 1 1 1 2 2 2 2 Sugar (and other) transporter MFS_1_like PF12832.7 gi|289937591|ref|YP_003482193.1| - 3.8e-06 26.0 3.3 3.8e-06 26.0 3.3 2.6 1 1 2 3 3 3 3 MFS_1 like family PAS PF00989.25 gi|289937592|ref|YP_003482194.1| - 3e-08 33.7 0.0 4.2e-08 33.2 0.0 1.2 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.7 gi|289937592|ref|YP_003482194.1| - 1.2e-06 28.4 0.0 1.8e-06 27.8 0.0 1.3 1 0 0 1 1 1 1 PAS domain PAS_4 PF08448.10 gi|289937592|ref|YP_003482194.1| - 8.4e-06 26.0 0.1 1.5e-05 25.2 0.0 1.4 2 0 0 2 2 2 1 PAS fold PAS_9 PF13426.7 gi|289937592|ref|YP_003482194.1| - 0.0006 20.0 0.0 0.00091 19.4 0.0 1.2 1 0 0 1 1 1 1 PAS domain HATPase_c PF02518.26 gi|289937593|ref|YP_003482195.1| - 8.9e-26 90.6 0.1 2.2e-25 89.3 0.0 1.7 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|289937593|ref|YP_003482195.1| - 2.4e-13 49.9 8.1 1.2e-10 41.3 0.1 3.3 2 1 1 3 3 3 2 His Kinase A (phospho-acceptor) domain HATPase_c_5 PF14501.6 gi|289937593|ref|YP_003482195.1| - 1.9e-06 27.7 0.0 1.3e-05 25.0 0.0 2.1 2 0 0 2 2 2 1 GHKL domain HATPase_c_2 PF13581.6 gi|289937593|ref|YP_003482195.1| - 0.0043 17.0 0.1 0.0085 16.1 0.1 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain ApoLp-III PF07464.11 gi|289937593|ref|YP_003482195.1| - 0.057 13.5 0.1 5 7.2 0.0 2.1 2 0 0 2 2 2 0 Apolipophorin-III precursor (apoLp-III) Imm1 PF14430.6 gi|289937593|ref|YP_003482195.1| - 0.059 14.0 0.6 5.2 7.7 0.0 2.3 2 0 0 2 2 2 0 Immunity protein Imm1 FRB_dom PF08771.11 gi|289937593|ref|YP_003482195.1| - 0.062 13.7 0.6 0.14 12.6 0.6 1.6 1 0 0 1 1 1 0 FKBP12-rapamycin binding domain bZIP_1 PF00170.21 gi|289937593|ref|YP_003482195.1| - 0.16 12.0 1.9 0.19 11.8 1.0 1.6 2 0 0 2 2 2 0 bZIP transcription factor YabA PF06156.13 gi|289937593|ref|YP_003482195.1| - 0.18 12.5 1.2 0.52 11.0 0.5 1.9 2 0 0 2 2 2 0 Initiation control protein YabA bZIP_2 PF07716.15 gi|289937593|ref|YP_003482195.1| - 0.24 11.5 5.4 0.56 10.3 5.4 1.6 1 0 0 1 1 1 0 Basic region leucine zipper BAT PF15915.5 gi|289937595|ref|YP_003482197.1| - 2.7e-41 141.1 5.9 2.7e-41 141.1 5.9 3.3 3 1 0 3 3 3 1 GAF and HTH_10 associated domain GAF_2 PF13185.6 gi|289937595|ref|YP_003482197.1| - 1.3e-36 125.9 10.7 3.3e-17 63.1 0.3 4.0 4 0 0 4 4 4 3 GAF domain GAF PF01590.26 gi|289937595|ref|YP_003482197.1| - 2.1e-25 89.9 3.0 2.8e-12 47.4 0.1 4.1 3 1 0 3 3 3 3 GAF domain PAS_4 PF08448.10 gi|289937595|ref|YP_003482197.1| - 1.4e-23 83.2 7.1 2.2e-15 56.8 0.0 3.7 4 0 0 4 4 4 2 PAS fold PAS_9 PF13426.7 gi|289937595|ref|YP_003482197.1| - 7.6e-19 67.9 0.1 4.5e-12 46.1 0.0 2.9 2 0 0 2 2 2 2 PAS domain GAF_3 PF13492.6 gi|289937595|ref|YP_003482197.1| - 7.3e-18 65.2 0.3 4e-05 24.0 0.0 3.8 3 0 0 3 3 3 3 GAF domain PAS PF00989.25 gi|289937595|ref|YP_003482197.1| - 1.9e-16 60.1 0.0 1.3e-09 38.1 0.0 2.7 2 0 0 2 2 2 2 PAS fold HTH_10 PF04967.12 gi|289937595|ref|YP_003482197.1| - 3.2e-16 58.9 0.0 8.4e-16 57.5 0.0 1.8 1 0 0 1 1 1 1 HTH DNA binding domain PAS_8 PF13188.7 gi|289937595|ref|YP_003482197.1| - 6.1e-12 45.3 1.2 6e-09 35.7 0.1 3.9 5 0 0 5 5 5 1 PAS domain Sigma70_r4 PF04545.16 gi|289937595|ref|YP_003482197.1| - 0.0017 17.8 0.1 0.024 14.1 0.1 2.9 2 0 0 2 2 2 1 Sigma-70, region 4 PAS_11 PF14598.6 gi|289937595|ref|YP_003482197.1| - 0.056 13.6 0.1 0.54 10.4 0.0 2.7 3 0 0 3 3 3 0 PAS domain HTH_24 PF13412.6 gi|289937595|ref|YP_003482197.1| - 0.059 12.9 0.0 0.16 11.6 0.0 1.7 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding TetR_C_20 PF17925.1 gi|289937595|ref|YP_003482197.1| - 1.1 9.6 4.4 2.6 8.4 0.1 3.5 4 0 0 4 4 4 0 Tetracyclin repressor-like, C-terminal domain HTH_20 PF12840.7 gi|289937596|ref|YP_003482198.1| - 0.029 14.4 0.1 0.1 12.7 0.1 1.8 1 1 0 1 1 1 0 Helix-turn-helix domain DDE_3 PF13358.6 gi|289937597|ref|YP_003482199.1| - 1.9e-34 118.6 0.0 3.8e-34 117.5 0.0 1.6 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_33 PF13592.6 gi|289937597|ref|YP_003482199.1| - 3.7e-19 68.1 0.1 3.7e-19 68.1 0.1 2.1 3 0 0 3 3 3 1 Winged helix-turn helix HTH_29 PF13551.6 gi|289937597|ref|YP_003482199.1| - 1.3e-10 41.1 0.9 3.5e-09 36.6 0.2 2.3 2 0 0 2 2 2 1 Winged helix-turn helix HTH_32 PF13565.6 gi|289937597|ref|YP_003482199.1| - 3e-10 40.6 0.2 3e-10 40.6 0.2 2.3 3 0 0 3 3 3 1 Homeodomain-like domain HTH_28 PF13518.6 gi|289937597|ref|YP_003482199.1| - 7.7e-10 38.8 0.2 1.8e-09 37.5 0.2 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain DUF2605 PF10792.9 gi|289937597|ref|YP_003482199.1| - 0.00095 19.0 1.4 2 8.4 0.0 3.4 3 0 0 3 3 3 2 Protein of unknown function (DUF2605) HTH_23 PF13384.6 gi|289937597|ref|YP_003482199.1| - 0.0022 17.7 0.0 0.0061 16.3 0.0 1.7 1 0 0 1 1 1 1 Homeodomain-like domain DDE_Tnp_ISAZ013 PF07592.11 gi|289937597|ref|YP_003482199.1| - 0.0072 15.3 0.0 0.06 12.3 0.0 2.0 2 0 0 2 2 2 1 Rhodopirellula transposase DDE domain HTH_Tnp_Tc3_2 PF01498.18 gi|289937597|ref|YP_003482199.1| - 0.065 13.5 0.1 0.35 11.2 0.0 2.2 3 0 0 3 3 3 0 Transposase HTH_Tnp_IS630 PF01710.16 gi|289937597|ref|YP_003482199.1| - 0.094 12.8 0.1 0.22 11.6 0.1 1.6 1 0 0 1 1 1 0 Transposase HATPase_c PF02518.26 gi|289937598|ref|YP_003482200.1| - 4e-27 94.9 0.0 2.1e-26 92.6 0.0 2.0 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|289937598|ref|YP_003482200.1| - 8.7e-13 48.1 1.3 6.2e-11 42.2 0.1 2.7 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.10 gi|289937598|ref|YP_003482200.1| - 8e-08 32.5 0.1 2.7e-07 30.8 0.0 2.0 2 0 0 2 2 2 1 PAS fold HATPase_c_5 PF14501.6 gi|289937598|ref|YP_003482200.1| - 1.8e-05 24.6 0.0 4.4e-05 23.3 0.0 1.7 1 0 0 1 1 1 1 GHKL domain PAS_9 PF13426.7 gi|289937598|ref|YP_003482200.1| - 0.00062 20.0 0.0 0.0023 18.1 0.0 2.0 1 0 0 1 1 1 1 PAS domain HATPase_c_3 PF13589.6 gi|289937598|ref|YP_003482200.1| - 0.0021 17.9 0.0 0.0042 16.9 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_10 PF13596.6 gi|289937598|ref|YP_003482200.1| - 0.0062 17.1 0.0 0.014 16.0 0.0 1.6 1 0 0 1 1 1 1 PAS domain PAS PF00989.25 gi|289937598|ref|YP_003482200.1| - 0.011 15.7 0.2 0.15 12.1 0.0 2.8 2 1 0 2 2 2 0 PAS fold HATPase_c_2 PF13581.6 gi|289937598|ref|YP_003482200.1| - 0.032 14.2 0.0 0.067 13.1 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain sCache_like PF16736.5 gi|289937598|ref|YP_003482200.1| - 0.079 13.1 0.1 0.37 10.9 0.0 2.1 2 0 0 2 2 2 0 Single Cache-like DUF1508 PF07411.12 gi|289937599|ref|YP_003482201.1| - 4.8e-77 253.6 0.0 6.3e-09 35.6 0.2 12.2 12 0 0 12 12 12 12 Domain of unknown function (DUF1508) FtsQ PF03799.15 gi|289937599|ref|YP_003482201.1| - 5.7e-08 33.6 0.8 3.5 8.5 0.0 6.0 4 2 0 5 5 5 3 Cell division protein FtsQ DDE_Tnp_IS240 PF13610.6 gi|289937599|ref|YP_003482201.1| - 0.019 15.2 11.0 12 6.1 0.0 6.3 6 2 1 7 7 7 0 DDE domain DUF2914 PF11141.8 gi|289937599|ref|YP_003482201.1| - 2.4 8.0 12.3 10 5.9 0.0 6.0 6 0 0 6 6 6 0 Protein of unknown function (DUF2914) Gln-synt_C PF00120.24 gi|289937600|ref|YP_003482202.1| - 1.1e-87 294.2 0.0 1.4e-87 293.9 0.0 1.0 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.19 gi|289937600|ref|YP_003482202.1| - 0.032 14.0 0.7 0.1 12.4 0.1 2.1 2 1 0 2 2 2 0 Glutamine synthetase, beta-Grasp domain Usp PF00582.26 gi|289937601|ref|YP_003482203.1| - 5.3e-24 85.3 15.3 5.9e-16 59.3 0.8 2.6 2 1 0 2 2 2 2 Universal stress protein family OrfB_Zn_ribbon PF07282.11 gi|289937602|ref|YP_003482204.1| - 3.6e-19 68.5 1.8 7.8e-19 67.4 1.8 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain IBR PF01485.21 gi|289937602|ref|YP_003482204.1| - 0.018 15.3 2.9 0.037 14.3 2.9 1.4 1 0 0 1 1 1 0 IBR domain, a half RING-finger domain XisH PF08814.10 gi|289937602|ref|YP_003482204.1| - 0.05 13.8 0.1 0.1 12.8 0.1 1.4 1 0 0 1 1 1 0 XisH protein Zn_Tnp_IS1595 PF12760.7 gi|289937602|ref|YP_003482204.1| - 2.7 8.0 8.2 5.5 7.0 8.2 1.5 1 0 0 1 1 1 0 Transposase zinc-ribbon domain Na_H_Exchanger PF00999.21 gi|289937603|ref|YP_003482205.1| - 3.4e-26 92.0 47.9 4.6e-26 91.5 47.9 1.1 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family TrkA_N PF02254.18 gi|289937603|ref|YP_003482205.1| - 6e-14 52.3 0.0 1.2e-13 51.4 0.0 1.5 1 0 0 1 1 1 1 TrkA-N domain Na_H_Exchanger PF00999.21 gi|289937604|ref|YP_003482206.1| - 2.4e-50 171.4 44.2 4.1e-50 170.7 44.2 1.3 1 1 0 1 1 1 1 Sodium/hydrogen exchanger family TrkA_N PF02254.18 gi|289937604|ref|YP_003482206.1| - 7.4e-14 52.0 2.3 7.4e-14 52.0 2.3 2.1 2 0 0 2 2 2 1 TrkA-N domain Shikimate_DH PF01488.20 gi|289937604|ref|YP_003482206.1| - 0.00093 19.3 0.0 0.0019 18.2 0.0 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase NAD_binding_7 PF13241.6 gi|289937604|ref|YP_003482206.1| - 0.001 19.5 0.6 0.0053 17.2 0.6 2.0 1 1 1 2 2 2 1 Putative NAD(P)-binding DUF4010 PF13194.6 gi|289937604|ref|YP_003482206.1| - 0.0023 17.6 12.7 0.0023 17.6 12.7 2.8 3 1 0 3 3 3 1 Domain of unknown function (DUF4010) PsaM PF07465.13 gi|289937604|ref|YP_003482206.1| - 0.0077 15.9 3.1 0.037 13.7 3.1 2.2 1 0 0 1 1 1 1 Photosystem I protein M (PsaM) Intg_mem_TP0381 PF09529.10 gi|289937605|ref|YP_003482207.1| - 4.7 6.7 10.0 2.3 7.7 7.9 1.5 1 1 0 1 1 1 0 Integral membrane protein (intg_mem_TP0381) OrfB_Zn_ribbon PF07282.11 gi|289937607|ref|YP_003482209.1| - 8.5e-22 76.9 1.6 1.6e-21 76.0 1.6 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|289937607|ref|YP_003482209.1| - 6.8e-10 39.2 0.1 1.8e-09 37.8 0.0 1.8 2 0 0 2 2 2 1 Probable transposase HypA PF01155.19 gi|289937607|ref|YP_003482209.1| - 0.038 14.0 0.1 0.094 12.7 0.1 1.8 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DUF2357 PF09823.9 gi|289937607|ref|YP_003482209.1| - 0.072 12.3 0.0 0.11 11.7 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF2357) Ephrin_rec_like PF07699.13 gi|289937607|ref|YP_003482209.1| - 0.33 10.7 4.2 1 9.2 4.2 1.9 1 1 0 1 1 1 0 Putative ephrin-receptor like Rubredoxin_2 PF18073.1 gi|289937607|ref|YP_003482209.1| - 0.36 10.6 5.2 4.3 7.2 0.3 2.6 2 0 0 2 2 2 0 Rubredoxin metal binding domain Ribosomal_S14 PF00253.21 gi|289937610|ref|YP_003482212.1| - 2.2e-09 36.9 0.6 2.8e-09 36.6 0.6 1.2 1 0 0 1 1 1 1 Ribosomal protein S14p/S29e cobW PF02492.19 gi|289937612|ref|YP_003482214.1| - 4.8e-48 163.1 2.1 9.6e-48 162.1 2.1 1.5 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain CobW_C PF07683.14 gi|289937612|ref|YP_003482214.1| - 1.1e-27 95.8 0.1 3.3e-27 94.2 0.1 1.9 1 1 0 1 1 1 1 Cobalamin synthesis protein cobW C-terminal domain GTP_EFTU PF00009.27 gi|289937612|ref|YP_003482214.1| - 0.00013 21.6 0.1 0.069 12.7 0.0 2.2 2 0 0 2 2 2 2 Elongation factor Tu GTP binding domain RsgA_GTPase PF03193.16 gi|289937612|ref|YP_003482214.1| - 0.00063 19.7 0.2 1.1 9.1 0.0 2.3 2 0 0 2 2 2 2 RsgA GTPase T2SSE PF00437.20 gi|289937612|ref|YP_003482214.1| - 0.0018 17.4 0.2 0.0034 16.5 0.2 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein TrwB_AAD_bind PF10412.9 gi|289937612|ref|YP_003482214.1| - 0.0045 16.0 0.0 0.0064 15.4 0.0 1.2 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain CbiA PF01656.23 gi|289937612|ref|YP_003482214.1| - 0.0069 16.4 0.0 0.011 15.8 0.0 1.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Zeta_toxin PF06414.12 gi|289937612|ref|YP_003482214.1| - 0.0071 15.6 0.0 0.084 12.1 0.0 2.2 2 0 0 2 2 2 1 Zeta toxin TsaE PF02367.17 gi|289937612|ref|YP_003482214.1| - 0.027 14.5 0.0 0.061 13.3 0.0 1.6 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_18 PF13238.6 gi|289937612|ref|YP_003482214.1| - 0.038 14.5 0.2 0.1 13.1 0.0 1.8 2 0 0 2 2 2 0 AAA domain MMR_HSR1_Xtn PF16897.5 gi|289937612|ref|YP_003482214.1| - 0.051 13.6 0.2 0.099 12.7 0.2 1.4 1 0 0 1 1 1 0 C-terminal region of MMR_HSR1 domain AAA_28 PF13521.6 gi|289937612|ref|YP_003482214.1| - 0.054 13.7 0.1 0.25 11.6 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.6 gi|289937612|ref|YP_003482214.1| - 0.059 13.6 0.0 0.22 11.8 0.0 2.1 2 1 0 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|289937612|ref|YP_003482214.1| - 0.14 12.4 0.0 0.3 11.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain NAD_binding_9 PF13454.6 gi|289937613|ref|YP_003482215.1| - 1e-16 61.3 0.0 7e-11 42.4 0.0 3.1 3 0 0 3 3 3 2 FAD-NAD(P)-binding Pyr_redox_3 PF13738.6 gi|289937613|ref|YP_003482215.1| - 7.8e-12 45.1 0.0 8.8e-08 31.8 0.0 2.2 1 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.14 gi|289937613|ref|YP_003482215.1| - 5e-10 39.1 0.0 6.8e-06 25.5 0.0 2.9 1 1 1 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|289937613|ref|YP_003482215.1| - 5.8e-08 32.7 0.1 0.0084 15.7 0.0 2.7 2 2 0 2 2 2 2 FAD dependent oxidoreductase K_oxygenase PF13434.6 gi|289937613|ref|YP_003482215.1| - 1.1e-05 24.8 0.0 6.9e-05 22.1 0.0 2.1 1 1 1 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) NAD_binding_8 PF13450.6 gi|289937613|ref|YP_003482215.1| - 0.00025 21.2 0.2 0.71 10.1 0.0 2.8 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.27 gi|289937613|ref|YP_003482215.1| - 0.00072 20.1 0.0 0.48 11.0 0.0 2.5 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.12 gi|289937613|ref|YP_003482215.1| - 0.0035 16.5 0.3 5.1 6.0 0.0 3.2 3 1 0 3 3 3 2 Lycopene cyclase protein TrkA_N PF02254.18 gi|289937613|ref|YP_003482215.1| - 0.014 15.7 0.0 0.65 10.3 0.0 2.3 2 0 0 2 2 2 0 TrkA-N domain NAD_binding_9 PF13454.6 gi|289937614|ref|YP_003482216.1| - 2.3e-14 53.7 0.1 3.8e-11 43.2 0.0 3.3 3 0 0 3 3 3 1 FAD-NAD(P)-binding Pyr_redox_2 PF07992.14 gi|289937614|ref|YP_003482216.1| - 8.4e-11 41.6 0.0 3.7e-06 26.4 0.0 2.6 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase K_oxygenase PF13434.6 gi|289937614|ref|YP_003482216.1| - 4.9e-10 39.1 0.0 4e-09 36.1 0.0 2.0 2 0 0 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) Pyr_redox_3 PF13738.6 gi|289937614|ref|YP_003482216.1| - 1.3e-09 37.8 0.0 6.7e-07 28.9 0.0 2.4 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|289937614|ref|YP_003482216.1| - 4.2e-06 26.6 2.9 0.013 15.1 0.1 3.2 2 1 1 3 3 3 2 FAD dependent oxidoreductase Pyr_redox PF00070.27 gi|289937614|ref|YP_003482216.1| - 0.0002 21.9 1.0 0.056 14.0 0.0 3.0 4 0 0 4 4 4 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|289937614|ref|YP_003482216.1| - 0.00021 21.4 0.4 0.031 14.5 0.0 2.6 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain ApbA PF02558.16 gi|289937614|ref|YP_003482216.1| - 0.0058 16.3 0.2 0.028 14.0 0.0 2.0 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA F420_oxidored PF03807.17 gi|289937614|ref|YP_003482216.1| - 0.013 16.1 0.0 0.35 11.5 0.0 2.4 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent TrkA_N PF02254.18 gi|289937614|ref|YP_003482216.1| - 0.017 15.4 0.1 0.76 10.1 0.0 2.8 3 0 0 3 3 3 0 TrkA-N domain 3HCDH_N PF02737.18 gi|289937614|ref|YP_003482216.1| - 0.02 14.8 0.3 0.15 11.9 0.0 2.1 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_7 PF13241.6 gi|289937614|ref|YP_003482216.1| - 0.021 15.3 0.0 1 9.9 0.0 2.4 2 0 0 2 2 2 0 Putative NAD(P)-binding FAD_binding_3 PF01494.19 gi|289937614|ref|YP_003482216.1| - 0.42 9.8 1.7 7 5.8 0.1 2.5 3 0 0 3 3 3 0 FAD binding domain AAA_16 PF13191.6 gi|289937615|ref|YP_003482217.1| - 0.00027 21.3 0.3 0.00044 20.7 0.3 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_28 PF13521.6 gi|289937615|ref|YP_003482217.1| - 0.0048 17.2 3.5 0.0085 16.4 0.2 2.5 1 1 2 3 3 3 1 AAA domain AAA_22 PF13401.6 gi|289937615|ref|YP_003482217.1| - 0.007 16.6 0.0 0.013 15.8 0.0 1.5 1 1 0 1 1 1 1 AAA domain ArsA_ATPase PF02374.15 gi|289937615|ref|YP_003482217.1| - 0.011 15.0 0.0 0.016 14.4 0.0 1.3 1 0 0 1 1 1 0 Anion-transporting ATPase NTPase_1 PF03266.15 gi|289937615|ref|YP_003482217.1| - 0.015 15.2 0.1 0.029 14.3 0.1 1.4 1 0 0 1 1 1 0 NTPase DBI_PRT PF02277.17 gi|289937615|ref|YP_003482217.1| - 0.019 14.2 0.1 0.029 13.6 0.1 1.2 1 0 0 1 1 1 0 Phosphoribosyltransferase RuvB_N PF05496.12 gi|289937615|ref|YP_003482217.1| - 0.02 14.7 0.0 0.07 12.9 0.0 1.8 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain AAA PF00004.29 gi|289937615|ref|YP_003482217.1| - 0.025 15.0 0.0 0.039 14.4 0.0 1.4 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) TrwB_AAD_bind PF10412.9 gi|289937615|ref|YP_003482217.1| - 0.028 13.3 0.0 0.037 12.9 0.0 1.1 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain SRP54 PF00448.22 gi|289937615|ref|YP_003482217.1| - 0.047 13.3 0.0 0.083 12.5 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_30 PF13604.6 gi|289937615|ref|YP_003482217.1| - 0.06 13.1 0.1 0.085 12.6 0.1 1.3 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|289937615|ref|YP_003482217.1| - 0.095 11.9 0.0 0.14 11.3 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain AAA_18 PF13238.6 gi|289937615|ref|YP_003482217.1| - 0.11 13.1 0.0 0.19 12.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.27 gi|289937615|ref|YP_003482217.1| - 0.14 12.7 0.0 0.24 11.9 0.0 1.4 1 1 0 1 1 1 0 ABC transporter AAA_5 PF07728.14 gi|289937615|ref|YP_003482217.1| - 0.14 12.2 0.0 0.24 11.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_7 PF12775.7 gi|289937615|ref|YP_003482217.1| - 0.15 11.6 0.0 0.24 10.9 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region NACHT PF05729.12 gi|289937615|ref|YP_003482217.1| - 0.15 12.0 0.0 0.51 10.2 0.0 1.8 2 0 0 2 2 2 0 NACHT domain Malt_amylase_C PF16657.5 gi|289937615|ref|YP_003482217.1| - 0.17 12.0 0.0 0.35 11.0 0.0 1.5 1 0 0 1 1 1 0 Maltogenic Amylase, C-terminal domain DUF87 PF01935.17 gi|289937615|ref|YP_003482217.1| - 0.21 11.6 0.0 0.35 10.9 0.0 1.3 1 0 0 1 1 1 0 Helicase HerA, central domain ABC_membrane PF00664.23 gi|289937616|ref|YP_003482218.1| - 5.9e-40 137.6 5.9 7.4e-40 137.3 5.9 1.1 1 0 0 1 1 1 1 ABC transporter transmembrane region ABC_tran PF00005.27 gi|289937616|ref|YP_003482218.1| - 4.8e-29 101.6 0.0 3.3e-28 98.9 0.0 2.2 1 1 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|289937616|ref|YP_003482218.1| - 2.1e-05 24.1 0.0 0.00014 21.4 0.0 2.0 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|289937616|ref|YP_003482218.1| - 0.01 15.6 0.2 0.023 14.4 0.2 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF3584 PF12128.8 gi|289937616|ref|YP_003482218.1| - 0.012 13.2 0.0 0.021 12.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) AAA_16 PF13191.6 gi|289937616|ref|YP_003482218.1| - 0.034 14.5 0.2 0.89 9.9 0.0 2.4 2 0 0 2 2 2 0 AAA ATPase domain AAA_33 PF13671.6 gi|289937616|ref|YP_003482218.1| - 0.059 13.5 0.0 0.22 11.7 0.0 1.9 2 0 0 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 gi|289937616|ref|YP_003482218.1| - 0.067 13.1 0.0 0.2 11.6 0.0 1.7 1 0 0 1 1 1 0 RsgA GTPase Zeta_toxin PF06414.12 gi|289937616|ref|YP_003482218.1| - 0.13 11.5 0.0 0.36 10.1 0.0 1.7 1 0 0 1 1 1 0 Zeta toxin FAD_binding_4 PF01565.23 gi|289937617|ref|YP_003482219.1| - 1.2e-34 119.1 2.9 1.7e-34 118.5 2.9 1.3 1 0 0 1 1 1 1 FAD binding domain BBE PF08031.12 gi|289937617|ref|YP_003482219.1| - 1.3e-08 34.8 0.1 2.6e-08 33.8 0.1 1.5 1 0 0 1 1 1 1 Berberine and berberine like Cytokin-bind PF09265.10 gi|289937617|ref|YP_003482219.1| - 0.0029 17.0 0.0 0.0045 16.4 0.0 1.3 1 0 0 1 1 1 1 Cytokinin dehydrogenase 1, FAD and cytokinin binding Beta-lactamase PF00144.24 gi|289937618|ref|YP_003482220.1| - 2.6e-49 168.3 0.0 3.3e-49 167.9 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase Beta-lactamase2 PF13354.6 gi|289937618|ref|YP_003482220.1| - 0.0049 16.5 0.0 0.009 15.6 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase enzyme family DUF2721 PF11026.8 gi|289937620|ref|YP_003482222.1| - 0.1 12.5 2.5 0.12 12.2 2.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2721) YiaAB PF05360.14 gi|289937620|ref|YP_003482222.1| - 0.12 12.6 4.1 0.15 12.3 4.1 1.2 1 0 0 1 1 1 0 yiaA/B two helix domain Trp_oprn_chp PF09534.10 gi|289937622|ref|YP_003482224.1| - 0.36 10.6 10.6 0.64 9.8 10.6 1.4 1 0 0 1 1 1 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) Usp PF00582.26 gi|289937624|ref|YP_003482226.1| - 1.2e-06 29.1 0.1 1.3e-06 29.0 0.1 1.0 1 0 0 1 1 1 1 Universal stress protein family YdjM PF04307.14 gi|289937625|ref|YP_003482227.1| - 0.00086 18.7 19.2 0.0075 15.6 17.8 2.5 1 1 1 2 2 2 1 LexA-binding, inner membrane-associated putative hydrolase DUF2238 PF09997.9 gi|289937626|ref|YP_003482228.1| - 0.47 10.2 16.5 0.14 11.9 3.3 3.7 3 1 0 3 3 3 0 Predicted membrane protein (DUF2238) Glyco_tranf_2_3 PF13641.6 gi|289937627|ref|YP_003482229.1| - 0.00046 20.1 0.0 0.00068 19.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.6 gi|289937627|ref|YP_003482229.1| - 0.00063 19.3 0.0 0.02 14.4 0.0 2.3 1 1 1 2 2 2 1 Glycosyl transferase family 21 Glycos_transf_2 PF00535.26 gi|289937627|ref|YP_003482229.1| - 0.011 15.5 0.0 0.035 13.9 0.0 1.8 2 0 0 2 2 2 0 Glycosyl transferase family 2 RHH_6 PF16762.5 gi|289937629|ref|YP_003482231.1| - 4.6e-06 27.2 2.3 0.00027 21.5 2.3 2.7 1 1 0 1 1 1 1 Ribbon-helix-helix domain RHH_1 PF01402.21 gi|289937629|ref|YP_003482231.1| - 0.00039 20.3 2.0 0.014 15.3 0.0 3.2 2 1 1 3 3 3 1 Ribbon-helix-helix protein, copG family RHH_8 PF17723.1 gi|289937629|ref|YP_003482231.1| - 0.008 16.4 0.0 0.018 15.2 0.0 1.5 1 1 0 1 1 1 1 Ribbon-Helix-Helix transcriptional regulator family FUSC PF04632.12 gi|289937629|ref|YP_003482231.1| - 0.031 12.8 3.3 0.038 12.6 3.3 1.0 1 0 0 1 1 1 0 Fusaric acid resistance protein family Trans_reg_C PF00486.28 gi|289937629|ref|YP_003482231.1| - 0.034 14.2 0.3 0.067 13.3 0.2 1.5 1 1 0 1 1 1 0 Transcriptional regulatory protein, C terminal cwf21 PF08312.12 gi|289937629|ref|YP_003482231.1| - 0.047 13.8 3.2 2.2 8.5 3.2 2.6 1 1 0 1 1 1 0 cwf21 domain HhH-GPD PF00730.25 gi|289937629|ref|YP_003482231.1| - 0.097 13.1 0.0 0.13 12.7 0.0 1.3 1 0 0 1 1 1 0 HhH-GPD superfamily base excision DNA repair protein PIN_3 PF13470.6 gi|289937630|ref|YP_003482232.1| - 0.091 13.5 0.6 0.13 13.1 0.6 1.4 1 1 0 1 1 1 0 PIN domain HTH_Tnp_1_2 PF13022.6 gi|289937630|ref|YP_003482232.1| - 0.12 12.5 0.0 0.61 10.2 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix of insertion element transposase HATPase_c_3 PF13589.6 gi|289937635|ref|YP_003482237.1| - 0.00012 22.0 0.1 0.00022 21.1 0.1 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CbbQ_C PF08406.10 gi|289937635|ref|YP_003482237.1| - 0.014 15.6 0.0 0.04 14.2 0.0 1.7 1 0 0 1 1 1 0 CbbQ/NirQ/NorQ C-terminal DDE_3 PF13358.6 gi|289937638|ref|YP_003482240.1| - 1.7e-37 128.4 0.0 1.2e-36 125.7 0.0 2.1 2 0 0 2 2 2 1 DDE superfamily endonuclease HTH_33 PF13592.6 gi|289937638|ref|YP_003482240.1| - 6.7e-20 70.5 2.8 1.8e-19 69.1 0.0 2.6 3 0 0 3 3 3 1 Winged helix-turn helix HTH_28 PF13518.6 gi|289937638|ref|YP_003482240.1| - 4.9e-13 49.0 0.4 1.1e-12 47.8 0.4 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_32 PF13565.6 gi|289937638|ref|YP_003482240.1| - 1.3e-11 44.9 0.2 5e-11 43.1 0.2 2.1 1 0 0 1 1 1 1 Homeodomain-like domain HTH_29 PF13551.6 gi|289937638|ref|YP_003482240.1| - 1.8e-09 37.5 0.2 3.6e-09 36.5 0.2 1.5 1 0 0 1 1 1 1 Winged helix-turn helix HTH_23 PF13384.6 gi|289937638|ref|YP_003482240.1| - 4.2e-05 23.2 0.2 9.9e-05 22.0 0.2 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_Tnp_IS630 PF01710.16 gi|289937638|ref|YP_003482240.1| - 0.0037 17.3 0.1 0.0073 16.3 0.1 1.4 1 0 0 1 1 1 1 Transposase DUF2605 PF10792.9 gi|289937638|ref|YP_003482240.1| - 0.0067 16.3 1.5 6.7 6.7 0.0 3.3 3 0 0 3 3 3 2 Protein of unknown function (DUF2605) Terminase_5 PF06056.12 gi|289937638|ref|YP_003482240.1| - 0.078 12.9 0.2 0.15 12.0 0.2 1.5 1 0 0 1 1 1 0 Putative ATPase subunit of terminase (gpP-like) HTH_11 PF08279.12 gi|289937638|ref|YP_003482240.1| - 0.16 11.9 0.5 4.9 7.2 0.1 2.3 2 0 0 2 2 2 0 HTH domain HTH_10 PF04967.12 gi|289937639|ref|YP_003482241.1| - 1.2e-16 60.2 0.0 1.8e-16 59.6 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4_2 PF08281.12 gi|289937639|ref|YP_003482241.1| - 1.7e-05 24.4 0.3 0.00019 21.0 0.0 2.2 2 0 0 2 2 2 1 Sigma-70, region 4 GerE PF00196.19 gi|289937639|ref|YP_003482241.1| - 0.00017 21.1 0.1 0.00057 19.4 0.1 1.8 1 1 0 1 1 1 1 Bacterial regulatory proteins, luxR family Sigma70_r4 PF04545.16 gi|289937639|ref|YP_003482241.1| - 0.0064 16.0 0.0 0.012 15.1 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_24 PF13412.6 gi|289937639|ref|YP_003482241.1| - 0.028 14.0 0.0 0.049 13.2 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding LexA_DNA_bind PF01726.16 gi|289937639|ref|YP_003482241.1| - 0.063 13.1 0.0 0.15 11.9 0.0 1.6 1 1 0 1 1 1 0 LexA DNA binding domain HTH_23 PF13384.6 gi|289937639|ref|YP_003482241.1| - 0.07 12.9 0.0 0.19 11.6 0.0 1.7 2 0 0 2 2 2 0 Homeodomain-like domain HTH_40 PF14493.6 gi|289937639|ref|YP_003482241.1| - 0.16 12.4 0.0 0.42 11.1 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Acetyltransf_1 PF00583.25 gi|289937640|ref|YP_003482242.1| - 2.4e-09 37.4 0.0 3e-09 37.1 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|289937640|ref|YP_003482242.1| - 9.3e-09 35.6 0.1 1.7e-08 34.8 0.1 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|289937640|ref|YP_003482242.1| - 1.9e-08 34.3 0.0 2.7e-08 33.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|289937640|ref|YP_003482242.1| - 0.00022 21.9 0.0 0.00027 21.6 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|289937640|ref|YP_003482242.1| - 0.00078 19.5 0.0 0.0012 18.9 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|289937640|ref|YP_003482242.1| - 0.016 15.2 0.0 0.027 14.5 0.0 1.3 1 0 0 1 1 1 0 FR47-like protein Acetyltransf_4 PF13420.7 gi|289937640|ref|YP_003482242.1| - 0.019 15.1 0.0 0.031 14.4 0.0 1.4 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain CPBP PF02517.16 gi|289937642|ref|YP_003482244.1| - 2.6e-14 53.3 5.1 2.6e-14 53.3 5.1 3.1 3 1 0 3 3 3 1 CPBP intramembrane metalloprotease DUF3094 PF11293.8 gi|289937642|ref|YP_003482244.1| - 1.8 8.3 4.4 0.97 9.2 1.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3094) Rhomboid PF01694.22 gi|289937643|ref|YP_003482245.1| - 1.5e-12 47.8 10.6 1.5e-12 47.8 10.6 1.5 2 0 0 2 2 2 1 Rhomboid family DUF3185 PF11381.8 gi|289937643|ref|YP_003482245.1| - 1.2 9.2 8.0 0.086 12.9 1.9 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF3185) DDE_Tnp_1 PF01609.21 gi|289937644|ref|YP_003482246.1| - 1.3e-12 47.9 3.6 2e-12 47.2 3.6 1.2 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_2 PF13586.6 gi|289937644|ref|YP_003482246.1| - 7.4e-05 23.0 0.3 0.00014 22.2 0.3 1.5 1 0 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.11 gi|289937644|ref|YP_003482246.1| - 0.0013 18.8 0.6 0.014 15.4 0.1 2.6 3 0 0 3 3 3 1 Transposase domain (DUF772) DDE_Tnp_1_5 PF13737.6 gi|289937644|ref|YP_003482246.1| - 0.038 14.3 0.0 0.092 13.1 0.0 1.7 1 0 0 1 1 1 0 Transposase DDE domain DDE_Tnp_1_3 PF13612.6 gi|289937644|ref|YP_003482246.1| - 0.058 13.4 0.0 0.1 12.6 0.0 1.4 1 0 0 1 1 1 0 Transposase DDE domain HalOD1 PF18545.1 gi|289937645|ref|YP_003482247.1| - 4.7e-09 36.4 0.2 6.2e-09 36.0 0.2 1.2 1 0 0 1 1 1 1 Halobacterial output domain 1 DUF2250 PF10007.9 gi|289937646|ref|YP_003482248.1| - 0.0011 19.1 0.0 0.0018 18.4 0.0 1.3 1 1 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) MarR_2 PF12802.7 gi|289937646|ref|YP_003482248.1| - 0.0032 17.3 0.0 0.0036 17.2 0.0 1.2 1 0 0 1 1 1 1 MarR family Mrr_N PF14338.6 gi|289937646|ref|YP_003482248.1| - 0.014 15.5 0.0 0.017 15.2 0.0 1.1 1 0 0 1 1 1 0 Mrr N-terminal domain HTH_AsnC-type PF13404.6 gi|289937646|ref|YP_003482248.1| - 0.042 13.7 0.0 0.056 13.3 0.0 1.2 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain zf-HC2 PF13490.6 gi|289937646|ref|YP_003482248.1| - 0.32 11.3 4.2 0.68 10.2 0.9 2.3 2 0 0 2 2 2 0 Putative zinc-finger DUF5305 PF17231.2 gi|289937647|ref|YP_003482249.1| - 4.2e-53 180.0 1.2 7.3e-53 179.2 0.8 1.6 2 0 0 2 2 2 1 Family of unknown function (DUF5305) DUF4131 PF13567.6 gi|289937647|ref|YP_003482249.1| - 0.0088 15.7 0.3 0.32 10.6 0.0 2.9 3 1 0 3 3 3 1 Domain of unknown function (DUF4131) DUF3992 PF13157.6 gi|289937647|ref|YP_003482249.1| - 0.023 15.4 0.1 0.083 13.6 0.1 2.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3992) Peptidase_S24 PF00717.23 gi|289937648|ref|YP_003482250.1| - 2.5e-08 33.7 0.3 5.3e-08 32.7 0.3 1.5 1 0 0 1 1 1 1 Peptidase S24-like NosL PF05573.12 gi|289937649|ref|YP_003482251.1| - 1.3e-08 35.3 0.2 3.6e-08 33.8 0.1 1.8 2 0 0 2 2 2 1 NosL TAT_signal PF10518.9 gi|289937649|ref|YP_003482251.1| - 0.21 11.5 4.5 0.36 10.8 4.5 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Nop14 PF04147.12 gi|289937649|ref|YP_003482251.1| - 0.33 9.1 13.7 0.44 8.7 13.7 1.1 1 0 0 1 1 1 0 Nop14-like family ACT_5 PF13710.6 gi|289937650|ref|YP_003482252.1| - 0.042 13.7 0.1 0.26 11.2 0.0 2.2 2 1 0 2 2 2 0 ACT domain SMP_C2CD2L PF18696.1 gi|289937650|ref|YP_003482252.1| - 0.086 12.7 0.1 0.11 12.4 0.1 1.1 1 0 0 1 1 1 0 Synaptotagmin-like, mitochondrial and lipid-binding domain TFIIB PF00382.19 gi|289937651|ref|YP_003482253.1| - 4e-45 151.7 1.4 3.5e-26 91.0 0.1 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|289937651|ref|YP_003482253.1| - 9.4e-14 50.7 1.0 1.9e-13 49.7 1.0 1.6 1 0 0 1 1 1 1 TFIIB zinc-binding HTH_23 PF13384.6 gi|289937651|ref|YP_003482253.1| - 0.07 12.9 0.4 0.58 10.0 0.1 2.7 2 0 0 2 2 2 0 Homeodomain-like domain Sigma70_r4 PF04545.16 gi|289937651|ref|YP_003482253.1| - 0.077 12.5 0.3 1.1 8.9 0.0 2.9 2 1 0 2 2 2 0 Sigma-70, region 4 RPA_interact_C PF14768.6 gi|289937651|ref|YP_003482253.1| - 0.1 13.2 0.0 0.2 12.3 0.0 1.7 1 0 0 1 1 1 0 Replication protein A interacting C-terminal Ribosomal_S27e PF01667.17 gi|289937651|ref|YP_003482253.1| - 0.14 11.9 0.2 0.26 11.0 0.2 1.3 1 0 0 1 1 1 0 Ribosomal protein S27 Cyclin_C PF02984.19 gi|289937651|ref|YP_003482253.1| - 0.15 12.1 0.0 1 9.4 0.0 2.0 2 0 0 2 2 2 0 Cyclin, C-terminal domain Zn-ribbon_8 PF09723.10 gi|289937651|ref|YP_003482253.1| - 1.3 9.2 4.5 4.6 7.4 0.6 2.4 1 1 2 3 3 3 0 Zinc ribbon domain Tweety PF04906.13 gi|289937653|ref|YP_003482255.1| - 0.18 10.5 0.6 0.2 10.3 0.6 1.1 1 0 0 1 1 1 0 Tweety tRNA_anti-codon PF01336.25 gi|289937654|ref|YP_003482256.1| - 0.00065 19.6 0.0 0.0017 18.3 0.0 1.7 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain T2SS-T3SS_pil_N PF13629.6 gi|289937654|ref|YP_003482256.1| - 0.043 13.5 0.0 0.11 12.3 0.0 1.6 1 0 0 1 1 1 0 Pilus formation protein N terminal region Peptidase_S9 PF00326.21 gi|289937655|ref|YP_003482257.1| - 3e-49 167.4 0.1 6.1e-49 166.4 0.0 1.5 2 0 0 2 2 2 1 Prolyl oligopeptidase family DLH PF01738.18 gi|289937655|ref|YP_003482257.1| - 3e-13 49.8 0.0 9.2e-13 48.2 0.0 1.8 1 1 0 1 1 1 1 Dienelactone hydrolase family Abhydrolase_1 PF00561.20 gi|289937655|ref|YP_003482257.1| - 1.2e-08 35.0 0.2 0.0024 17.5 0.1 2.2 1 1 1 2 2 2 2 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 gi|289937655|ref|YP_003482257.1| - 3.9e-08 32.9 0.9 0.00082 18.7 0.0 2.2 2 0 0 2 2 2 2 Serine aminopeptidase, S33 Peptidase_S15 PF02129.18 gi|289937655|ref|YP_003482257.1| - 4.7e-08 33.0 0.2 0.0053 16.4 0.5 2.2 1 1 1 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) Abhydrolase_4 PF08386.10 gi|289937655|ref|YP_003482257.1| - 7e-06 26.1 0.0 2.2e-05 24.5 0.0 1.8 1 0 0 1 1 1 1 TAP-like protein PD40 PF07676.12 gi|289937655|ref|YP_003482257.1| - 8.4e-06 25.6 1.2 0.14 12.2 0.0 3.2 3 0 0 3 3 2 2 WD40-like Beta Propeller Repeat Abhydrolase_3 PF07859.13 gi|289937655|ref|YP_003482257.1| - 4.2e-05 23.5 1.8 0.00045 20.2 1.8 2.4 1 1 0 1 1 1 1 alpha/beta hydrolase fold COesterase PF00135.28 gi|289937655|ref|YP_003482257.1| - 0.00039 19.4 0.0 0.00056 18.9 0.0 1.1 1 0 0 1 1 1 1 Carboxylesterase family Gmad1 PF10647.9 gi|289937655|ref|YP_003482257.1| - 0.00058 19.7 0.7 0.0017 18.1 0.6 1.9 1 1 0 1 1 1 1 Lipoprotein LpqB beta-propeller domain AXE1 PF05448.12 gi|289937655|ref|YP_003482257.1| - 0.0012 17.6 0.1 0.012 14.3 0.1 2.3 1 1 0 1 1 1 1 Acetyl xylan esterase (AXE1) Abhydrolase_2 PF02230.16 gi|289937655|ref|YP_003482257.1| - 0.021 14.6 0.0 2.7 7.8 0.0 2.7 3 0 0 3 3 3 0 Phospholipase/Carboxylesterase DUF5050 PF16472.5 gi|289937655|ref|YP_003482257.1| - 0.026 13.8 0.0 0.14 11.4 0.0 2.1 2 1 0 2 2 2 0 Domain of unknown function (DUF5050) FSH1 PF03959.13 gi|289937655|ref|YP_003482257.1| - 0.21 11.2 0.0 0.34 10.5 0.0 1.2 1 0 0 1 1 1 0 Serine hydrolase (FSH1) Lactamase_B_2 PF12706.7 gi|289937656|ref|YP_003482258.1| - 8.8e-09 35.2 0.1 1.7e-08 34.2 0.1 1.5 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|289937656|ref|YP_003482258.1| - 4.3e-05 23.6 1.0 4.3e-05 23.6 1.0 2.5 3 1 0 3 3 3 1 Metallo-beta-lactamase superfamily Fic PF02661.18 gi|289937658|ref|YP_003482260.1| - 6.1e-21 75.1 0.0 2.8e-20 73.0 0.0 2.0 2 0 0 2 2 2 1 Fic/DOC family Fic_N PF13784.6 gi|289937658|ref|YP_003482260.1| - 2e-19 69.4 0.1 3.3e-19 68.7 0.1 1.4 1 0 0 1 1 1 1 Fic/DOC family N-terminal TrmB PF01978.19 gi|289937658|ref|YP_003482260.1| - 1.8e-05 24.5 0.1 4.2e-05 23.4 0.1 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.12 gi|289937658|ref|YP_003482260.1| - 3.8e-05 23.5 0.0 0.00012 22.0 0.0 1.8 1 0 0 1 1 1 1 HTH domain HTH_27 PF13463.6 gi|289937658|ref|YP_003482260.1| - 0.0092 16.5 0.1 0.06 13.9 0.0 2.3 3 0 0 3 3 3 1 Winged helix DNA-binding domain MarR_2 PF12802.7 gi|289937658|ref|YP_003482260.1| - 0.02 14.8 0.0 0.038 13.9 0.0 1.5 1 0 0 1 1 1 0 MarR family HTH_13 PF11972.8 gi|289937658|ref|YP_003482260.1| - 0.2 11.8 0.0 0.59 10.2 0.0 1.8 2 0 0 2 2 2 0 HTH DNA binding domain DUF4233 PF14017.6 gi|289937659|ref|YP_003482261.1| - 3.2 8.1 10.2 7.3 7.0 10.2 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF4233) Wzy_C PF04932.15 gi|289937659|ref|YP_003482261.1| - 9.4 5.9 11.5 13 5.4 8.4 2.4 2 1 1 3 3 3 0 O-Antigen ligase DUF3006 PF11213.8 gi|289937661|ref|YP_003482263.1| - 7.8e-15 54.9 0.7 9e-15 54.7 0.7 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3006) DUF5034 PF16437.5 gi|289937662|ref|YP_003482264.1| - 0.0075 16.3 0.0 0.0093 16.0 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF5034) DUF3948 PF13134.6 gi|289937662|ref|YP_003482264.1| - 0.26 11.0 4.9 0.4 10.4 4.9 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3948) PQQ_2 PF13360.6 gi|289937663|ref|YP_003482265.1| - 1e-30 107.1 5.9 1.2e-16 61.1 2.0 3.2 1 1 2 3 3 3 3 PQQ-like domain PQQ_3 PF13570.6 gi|289937663|ref|YP_003482265.1| - 1.1e-19 70.2 19.5 6.6e-06 26.4 0.1 8.5 7 1 0 7 7 7 4 PQQ-like domain PQQ PF01011.21 gi|289937663|ref|YP_003482265.1| - 9.3e-14 50.6 17.3 0.0057 16.5 0.1 7.4 9 0 0 9 9 9 5 PQQ enzyme repeat Glu_cyclase_2 PF05096.12 gi|289937663|ref|YP_003482265.1| - 0.1 12.0 0.2 3.6 6.9 0.0 2.2 2 0 0 2 2 2 0 Glutamine cyclotransferase PIN PF01850.21 gi|289937665|ref|YP_003482267.1| - 2.1e-10 41.1 1.0 2.6e-10 40.8 1.0 1.1 1 0 0 1 1 1 1 PIN domain TGase_elicitor PF16683.5 gi|289937665|ref|YP_003482267.1| - 0.12 11.2 0.0 0.15 10.8 0.0 1.1 1 0 0 1 1 1 0 Transglutaminase elicitor MazE_antitoxin PF04014.18 gi|289937666|ref|YP_003482268.1| - 7.2e-08 32.2 0.2 7.2e-08 32.2 0.2 1.7 2 0 0 2 2 2 1 Antidote-toxin recognition MazE, bacterial antitoxin PrlF_antitoxin PF15937.5 gi|289937666|ref|YP_003482268.1| - 0.015 15.7 0.0 0.025 15.0 0.0 1.4 1 0 0 1 1 1 0 prlF antitoxin for toxin YhaV_toxin ATPase_2 PF01637.18 gi|289937667|ref|YP_003482269.1| - 7.1e-20 71.9 0.0 5.1e-19 69.1 0.0 2.1 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea DUF234 PF03008.14 gi|289937667|ref|YP_003482269.1| - 2.9e-13 50.1 0.0 5.9e-13 49.1 0.0 1.5 1 0 0 1 1 1 1 Archaea bacterial proteins of unknown function AAA_14 PF13173.6 gi|289937667|ref|YP_003482269.1| - 5.8e-07 29.6 0.0 1e-06 28.8 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|289937667|ref|YP_003482269.1| - 0.00032 21.1 0.0 0.00067 20.1 0.0 1.6 1 0 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|289937667|ref|YP_003482269.1| - 0.0026 18.0 0.0 0.0059 16.9 0.0 1.6 1 0 0 1 1 1 1 AAA domain DDE_Tnp_IS1595 PF12762.7 gi|289937668|ref|YP_003482270.1| - 3.7e-22 79.0 0.0 5.7e-22 78.4 0.0 1.3 1 0 0 1 1 1 1 ISXO2-like transposase domain Zn_Tnp_IS1595 PF12760.7 gi|289937668|ref|YP_003482270.1| - 3.2e-10 39.8 0.5 5.9e-10 39.0 0.5 1.5 1 0 0 1 1 1 1 Transposase zinc-ribbon domain Zn_Tnp_IS1 PF03811.13 gi|289937668|ref|YP_003482270.1| - 5.1e-05 22.9 2.6 0.00011 21.9 2.6 1.5 1 0 0 1 1 1 1 InsA N-terminal domain zf-C4_Topoisom PF01396.19 gi|289937668|ref|YP_003482270.1| - 0.0012 18.6 1.9 0.0024 17.6 1.9 1.5 1 0 0 1 1 1 1 Topoisomerase DNA binding C4 zinc finger DUF2089 PF09862.9 gi|289937668|ref|YP_003482270.1| - 0.014 15.4 0.2 0.032 14.3 0.2 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF2089) TackOD1 PF18551.1 gi|289937668|ref|YP_003482270.1| - 0.023 14.4 0.4 0.038 13.6 0.4 1.3 1 0 0 1 1 1 0 Thaumarchaeal output domain 1 Zn-ribbon_8 PF09723.10 gi|289937668|ref|YP_003482270.1| - 0.041 14.0 0.4 13 6.0 0.0 2.5 2 0 0 2 2 2 0 Zinc ribbon domain zinc-ribbons_6 PF07191.12 gi|289937668|ref|YP_003482270.1| - 0.05 13.6 0.5 0.098 12.7 0.5 1.4 1 0 0 1 1 1 0 zinc-ribbons CoiA PF06054.11 gi|289937668|ref|YP_003482270.1| - 0.097 11.8 0.1 0.15 11.2 0.1 1.2 1 0 0 1 1 1 0 Competence protein CoiA-like family Zn_ribbon_recom PF13408.6 gi|289937668|ref|YP_003482270.1| - 0.12 12.9 2.1 0.35 11.4 2.1 1.7 1 0 0 1 1 1 0 Recombinase zinc beta ribbon domain zf-Dof PF02701.15 gi|289937668|ref|YP_003482270.1| - 0.21 11.7 4.2 0.48 10.6 4.2 1.6 1 1 0 1 1 1 0 Dof domain, zinc finger zf-ISL3 PF14690.6 gi|289937668|ref|YP_003482270.1| - 0.68 10.6 6.9 2.3 9.0 0.4 2.7 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DUF1043 PF06295.12 gi|289937669|ref|YP_003482271.1| - 0.092 12.7 0.1 0.11 12.5 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1043) DUF3006 PF11213.8 gi|289937670|ref|YP_003482272.1| - 2e-16 59.9 1.0 2.4e-16 59.7 1.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3006) VAPB_antitox PF02697.14 gi|289937671|ref|YP_003482273.1| - 2.4e-13 50.6 2.9 3.1e-13 50.3 2.9 1.3 1 0 0 1 1 1 1 Putative antitoxin DIT1_PvcA PF05141.12 gi|289937671|ref|YP_003482273.1| - 0.069 12.6 0.5 0.08 12.4 0.5 1.0 1 0 0 1 1 1 0 Pyoverdine/dityrosine biosynthesis protein PIN PF01850.21 gi|289937672|ref|YP_003482274.1| - 9.6e-08 32.6 0.0 1.3e-07 32.1 0.0 1.2 1 0 0 1 1 1 1 PIN domain OrfB_Zn_ribbon PF07282.11 gi|289937673|ref|YP_003482275.1| - 1.4e-24 85.7 0.6 3.6e-24 84.5 0.6 1.7 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|289937673|ref|YP_003482275.1| - 3.2e-06 27.3 0.0 5.3e-06 26.7 0.0 1.3 1 0 0 1 1 1 1 Probable transposase zf-piccolo PF05715.13 gi|289937673|ref|YP_003482275.1| - 0.053 13.7 0.7 0.12 12.5 0.7 1.6 1 0 0 1 1 1 0 Piccolo Zn-finger zinc_ribbon_4 PF13717.6 gi|289937673|ref|YP_003482275.1| - 0.097 12.6 0.3 0.47 10.4 0.0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain DZR PF12773.7 gi|289937673|ref|YP_003482275.1| - 0.4 10.8 3.4 0.3 11.2 1.4 1.8 2 0 0 2 2 2 0 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|289937673|ref|YP_003482275.1| - 3.3 7.5 9.7 4.1 7.3 5.7 2.6 2 1 1 3 3 3 0 zinc-ribbon domain Rubredoxin_2 PF18073.1 gi|289937673|ref|YP_003482275.1| - 4.1 7.2 9.2 1.4 8.8 0.3 2.8 3 0 0 3 3 3 0 Rubredoxin metal binding domain CARDB PF07705.11 gi|289937676|ref|YP_003482278.1| - 7.7e-11 42.2 26.2 2.7e-05 24.3 2.7 3.8 4 0 0 4 4 4 3 CARDB PGF-CTERM PF18204.1 gi|289937676|ref|YP_003482278.1| - 0.00056 19.8 5.4 0.0013 18.6 5.4 1.7 1 0 0 1 1 1 1 PGF-CTERM motif DUF4981 PF16353.5 gi|289937676|ref|YP_003482278.1| - 0.0015 18.9 9.8 3.6 8.1 0.1 4.7 2 2 3 5 5 5 2 Domain of unknown function(DUF4981) N_BRCA1_IG PF16158.5 gi|289937676|ref|YP_003482278.1| - 0.069 13.9 0.5 4.2 8.2 0.3 2.8 2 1 0 2 2 2 0 Ig-like domain from next to BRCA1 gene bMG6 PF17962.1 gi|289937676|ref|YP_003482278.1| - 0.095 12.9 2.5 7.7 6.7 0.1 2.9 3 0 0 3 3 3 0 Bacterial macroglobulin domain 6 Cupredoxin_1 PF13473.6 gi|289937676|ref|YP_003482278.1| - 0.13 12.4 9.5 1.7 8.8 0.5 3.0 2 2 2 4 4 4 0 Cupredoxin-like domain Top6b_C PF18000.1 gi|289937676|ref|YP_003482278.1| - 0.77 9.9 13.5 9.6 6.4 0.4 3.9 3 1 0 3 3 3 0 Type 2 DNA topoisomerase 6 subunit B C-terminal domain Fn3-like PF14310.6 gi|289937676|ref|YP_003482278.1| - 0.88 9.7 12.4 0.81 9.8 0.2 4.9 4 2 0 5 5 5 0 Fibronectin type III-like domain PKD PF00801.20 gi|289937676|ref|YP_003482278.1| - 1.1 9.2 5.4 0.82 9.6 0.2 3.4 4 0 0 4 4 4 0 PKD domain Glyco_hydro_2 PF00703.21 gi|289937676|ref|YP_003482278.1| - 9.9 6.9 13.5 2.6 8.7 1.2 3.5 3 1 0 3 3 3 0 Glycosyl hydrolases family 2 Peptidase_S8 PF00082.22 gi|289937677|ref|YP_003482279.1| - 6.2e-35 120.9 8.3 6.2e-35 120.9 8.3 2.5 2 1 0 2 2 2 1 Subtilase family NosD PF05048.13 gi|289937677|ref|YP_003482279.1| - 6e-15 55.2 11.3 4.3e-09 36.0 4.4 2.7 2 1 1 3 3 3 2 Periplasmic copper-binding protein (NosD) CarboxypepD_reg PF13620.6 gi|289937677|ref|YP_003482279.1| - 2.2e-14 53.4 0.4 2.2e-14 53.4 0.4 3.7 4 0 0 4 4 4 1 Carboxypeptidase regulatory-like domain Beta_helix PF13229.6 gi|289937677|ref|YP_003482279.1| - 4e-12 46.3 8.1 1.4e-11 44.5 8.1 2.0 1 0 0 1 1 1 1 Right handed beta helix region CarbopepD_reg_2 PF13715.6 gi|289937677|ref|YP_003482279.1| - 6.3e-11 42.1 0.4 3e-10 39.9 0.4 2.3 1 0 0 1 1 1 1 CarboxypepD_reg-like domain MetallophosN PF16371.5 gi|289937677|ref|YP_003482279.1| - 0.0054 17.0 0.5 0.028 14.7 0.2 2.4 2 0 0 2 2 2 1 N terminal of Calcineurin-like phosphoesterase SlyX PF04102.12 gi|289937678|ref|YP_003482280.1| - 0.00019 22.0 7.5 0.00064 20.3 6.7 2.3 2 0 0 2 2 2 1 SlyX DUF16 PF01519.16 gi|289937678|ref|YP_003482280.1| - 0.064 13.7 2.4 0.33 11.5 1.9 2.0 2 0 0 2 2 2 0 Protein of unknown function DUF16 VirE_N PF08800.10 gi|289937678|ref|YP_003482280.1| - 0.096 12.8 0.0 0.39 10.8 0.0 2.0 2 0 0 2 2 2 0 VirE N-terminal domain Wtap PF17098.5 gi|289937678|ref|YP_003482280.1| - 0.18 11.7 2.7 0.45 10.4 2.7 1.5 1 0 0 1 1 1 0 WTAP/Mum2p family TolA_bind_tri PF16331.5 gi|289937678|ref|YP_003482280.1| - 0.9 9.7 10.0 0.92 9.6 8.4 1.9 2 0 0 2 2 2 0 TolA binding protein trimerisation bZIP_2 PF07716.15 gi|289937678|ref|YP_003482280.1| - 1.5 8.9 5.8 2.4 8.3 0.3 2.4 2 0 0 2 2 2 0 Basic region leucine zipper FlgN PF05130.12 gi|289937678|ref|YP_003482280.1| - 8 7.0 8.5 1.3 9.5 4.4 1.7 2 0 0 2 2 2 0 FlgN protein # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Natrialba_magadii_ATCC_43099_uid46245/NC_013924.faa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Natrialba_magadii_ATCC_43099_uid46245/NC_013924.PFam32-A --tblout /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Natrialba_magadii_ATCC_43099_uid46245/NC_013924.PFam32-A.tblout --cpu 20 /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Natrialba_magadii_ATCC_43099_uid46245/NC_013924.faa # Current dir: /oak/stanford/groups/akundaje/marinovg/genomes # Date: Mon Mar 25 15:53:25 2019 # [ok]